#This is a sample file distributed with Galaxy that is used by some #alignment tools. The maf_index.loc file has this format (white space #characters are TAB characters): # # # 30-way multiZ (hg38) 30_WAY_MULTIZ_HG38 hg38,panTro5,panPan2,gorGor5,ponAbe2,nomLeu3,rheMac8,macFas5,macNem1,cerAty1,papAnu3,chlSab2,manLeu1,nasLar1,colAng1,rhiRox1,rhiBie1,calJac3,saiBol1,cebCap1,aotNan1,tarSyr2,micMur3,proCoq1,eulMac1,eulFla1,otoGar3,mm10,canFam3,dasNov3 hg38,panTro5,panPan2,gorGor5,ponAbe2,nomLeu3,rheMac8,macFas5,macNem1,cerAty1,papAnu3,chlSab2,manLeu1,nasLar1,colAng1,rhiRox1,rhiBie1,calJac3,saiBol1,cebCap1,aotNan1,tarSyr2,micMur3,proCoq1,eulMac1,eulFla1,otoGar3,mm10,canFam3,dasNov3 /cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr18.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr1.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr19.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr10.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr2.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr11.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr15.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr3.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr4.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr20.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr12.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr16.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr5.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr17.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr6.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr21.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr13.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr22.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr14.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr7.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr9.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chrX.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chr8.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chrM.maf,/cvmfs/data.galaxyproject.org/managed/align/30_WAY_MULTIZ_HG38/chrY.maf