#This file lists the locations and dbkeys of all the fasta files #under the "genome" directory (a directory that contains a directory #for each build). The script extract_fasta.py will generate the file #all_fasta.loc. This file has the format (white space characters are #TAB characters): # # # #So, all_fasta.loc could look something like this: # #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa # #Your all_fasta.loc file should contain an entry for each individual #fasta file. So there will be multiple fasta files for each build, #such as with hg19 above. # hg19_rCRS_pUC18_phiX174 hg19_rCRS_pUC18_phiX174 Homo sapiens (hg19 with mtDNA replaced with rCRS, and containing pUC18 and phiX174) /cvmfs/data.galaxyproject.org/managed/seq/hg19_rCRS_pUC18_phiX174.fa aptMan1 aptMan1 Brown Kiwi Jun. 2015 (MPI-EVA AptMant0/aptMan1) (aptMan1) /cvmfs/data.galaxyproject.org/managed/seq/aptMan1.fa apiMel4 apiMel4 A. mellifera 04 Nov 2010 (Amel_4.5/apiMel4) (apiMel4) /cvmfs/data.galaxyproject.org/managed/seq/apiMel4.fa Amel_4.5 Amel_4.5 A. mellifera Nov. 2010 (GCF_000002195.4/Amel_4.5) (Amel_4.5) /cvmfs/data.galaxyproject.org/managed/seq/Amel_4.5.fa