##maf version=1 a score=34448 s mm7.chr9_random 64445 963 + 9745104 GTTATCTGATGGACAATTTTCCAGAGGGCTTTCTTGATGTCCCTGTTCCTCAGGCTCTAAATGAAGGGGTTCATCATGGGAACCACCATTGTATACATTACCGAAGCGACCATACTTTCCCTGGAAGAACTAGAAACTGTTGAACTGAGGTAAACTCCTATACCTGTTCCATAAAATAGGCAAACAACTGACAGGTGAGATCCACAGGTAGAGAAGGCTTTATATTTTGCTAACAGTGATGGTACTCTAAAAATAGAAGAAGTAATTTTATAGTAGGAGTAAAATATTCCTGAGGCAGGAAGGAAACCAACAATGATGCTTAAAAGAAACATGACTATGTCATTGATAGTAGTGTTAGAACAAGCAAGTTTTACAAGTTCTGGAACATCACAAAAGAAATGAGGGATTTCTACGTTAATACAAAATGTTAGTTGTGACACCAACAAGCAGTGTACCTGTGAACTCACAAGACTAATGGAAAGGGAAACTATGACCAAACATCTACAGAGGCGAGGGCTTAGAATGACTTGGTAGTGTAGAGGGCGACAAATAGCTACCCATCGGTCATAGGCCATCACAAGCCAGCAATAGGCTGTCCATACCCCCAAAAAGAAAAAAGAAATATACCCGAGTTAGGCATTCAGCATATGTTATGGATCTGTTATGGACATGCAAGTTTATCAGCATTTTGGGGATGGTGGTGCTGCTGAAGCCCATGTCAGACAATGAAAGGTTGTAGAGGAAGAAGTACATTGGGCTGTGGAGGTGGGAATCACAGCTGATGGCCAAGATGATGAGAACATTTCCAAGCACAGTGAGCAGGTATATGAGCATGAATAGTGCAAATAAGATGAGCTGCAGTTCAGGGTCTTCTGAGAGTCCAAGGAGAATGAATTCTAAGGTTCCTGTTAAATTATATGGTTCCATAAGGCTAGGACATCTTTTGAAAAGAAAAAATAAAAG s bosTau2.chr2 86492878 960 + 86543008 GTTGTTCTGTTGAGGAGCCTTCTGAAGGCTCCCTTCACATCCTTGTTCCTCAGGCTGTAGATGAAGGGGTTCAACATGGGGGTCACCACGCTGTACATCACGGAGGCCACTGAGACTTTCTGGGGGGAGTGAGTCACTGCAGAAGTGAAATGGACCCCCACACCTGTCCCGTAAAATAAAGAAACAACTGAGAGGTGAGACCCACAGGTGGAAAATGCTTTTTGCTTTCCCCCAGATGAGGACATCTTCCTTATGGATGAAGCAATTCGTGAGTAGGAGAAAAGAATCCCAACGAGGGGGAAAACACCCAGAACACCAGTCATAAAATATATCAAAGTCCAGTTCAGGAAGGTATCAGAGCAGGCCAATTCAAGAATATGTGTCAGTTCACAGAAGAAATGTGGAATTTCAAGATCTCTACAGAAGGTCAGGTGCTTCATCAGACAAATGTGAAGGAGGGATGTCAGGACACCAATGAGCCAGGTAATAAAAACCAGCCAACCACAGAGGTGTGGGTTCATGATGACCGTGTAGTGCAGGGGGTGACAGATGGCCACAAATCGGTCATAGGCCAT-GGAAGTCAGGAGCAGAGTGTCCAGGATAGGAAAAAGCATGGAAAAATACACCTGAGTGAGGCAGTCCATGTAGGAGATGGCTTTGTTCTCTGTATGGATGCTCAGTAGCATCTTGGGGACTATGCTGGTGCTGAAACAGATGTCAACCAAGGACAGGTTTGAGAGGAAGAAGTACATGGGGGTGTGGAGGTGGGAGTCAAAAATGATGGCCAAGATGATGAGCAGGTTGCCAAGCACAGTGACCAAGTACATGGACAGGAACAGCCCAAATATGAGGGGCTGCAGTTCTGGGTCCTCAGAGAACCCAAGGAGAATAAACTCTGAAACTCCTGTTCTGTTTCCTGCTTCCATGTAGCTGATATATCTAT--GAAGGAAGAGACAAGAG a score=1649 s mm7.chr9_random 65429 81 + 9745104 GTATAGATGTAAGTGTCTACATGCCTATATGTTTATAAACCAGCAATTCATAAG-AAATCATTCATACATGAGAACTGTTCA s bosTau2.chr7 32696591 80 + 69141744 GCACAGACATAAGTGTCCAGA-GTTTGGATTTGAACAATTCAA-AATTCAGAAATAAAGTATGCATGCTTGAGGACCATACA a score=26980 s mm7.chr9_random 182080 989 + 9745104 ACACTGTCACATGGAGACACACCTGGTCCAATG-GCCCATCTGCCACAGAACATTCTGTACCATGCTTCTGCCAGATATCTCATGTCTATTCCCATAAAAAAAAATGAATGTGTAGGTTGCTCCCAACCCTCTGTTGCTAAAACATCATATTTGAATCAAATTCAAGATTTTGTTTTGCCAAGATGTAGATAATGGCTGATGTACTAATGTAATCCTTTTAGGACTAAGTAAAAA---CAGACAAGACAGCTGTGTCCAATATACCATTAGAGAGTAATCCATCAGCCCTGGGTGTCCATAAATGAAAGACAAGGATGCATCTCAGGG---CCTCTGCCCAT-CTTCCTTCACAAGCCATACTCTACCCTGGCTTCTCCTCTCTCCCAAGTGATTCCAGGGAGCCAAA-GGCCTAATAATTTCAGCTGTCTAACGAGACAGATTGGAGCAGAAGCCAGCAACTGTTTACCCTCTAGCATCCTCTGGGAAATCCATCCAGCTCCGTGTTCCTGGTCTGCCCTTGTTTTCAAAGCTGCAATGTACAAATACCAAGTGACACGTGCCATGTCCAGAATGTTAGTGTCAAAACACAGGGCAAGAATGGAGAGAAGCAGAGGCAGCCCCTGGGAGGGAGAGGAGCCAGAACTACTTAGCGAGAAGAAGTGTGGATGTGGTGGGAGGGTTTAGATCCCAGCAC-------AGGACTTGAGGGACAACTGCACTTCTGCAGGGTCAAGGGGCAAACCGAGGGGATTCGTCCAG-TAGGATACACCTGACTCAGGTTT----GAGGGTTTTGTTTTGTTTTTAACAAATGAGGGGAACGGTGATTCTTGCATAGCCTTGGAGATGAGAAAAGCAGAATAGAATAAGCT---------CCACCAGCTTTGCTCAGCCAACTCCAGCAGCCGCTTCATTCAGTCTTTTCACTAGTTTG----AGGACCTGAGCCATGTGTCTTCATTTCACTCTCCTTATTGGTCAGCA-GAAAAGTTCAAAAGCTGTAACAAC s bosTau2.chr10 36027946 976 - 70001009 ATGCTCTCATGTGTATGCATACCTGGTATGATATATCTATCTAGTATAGAACATTCTG-------CTTCCAACAGAAATCCCTTTTCCATTCTGGTAGAGA----TGGACATCTAGGTTGCTTCCAGCTCACTGCTGTCAAACTACAAC--TTGAATAGAATTTTAAAAT---------CAAGAATCAGATAACTGCTGATGCA--------GTCTTTTTATGGTCAGGTGAAAAGAACAAATATTACAGTCGGACCCAA---ACCATAAGATGATAAACCATCAGCTGTGCAAGGGTTTAAATGAGTAACAATTATGAATCTTGGATTCCCCTTGGCCCATTCTTTCCTCACAGGTCC--CTCTGCACTGACTTTCCCTCTC-CCCAAGAGATCCCAGGAAATTGAATGACCTAAAAATTCCAGTTGCCTTGCTTGACAAATTGGAATGGAAGTCGACAGCTGTTTTCCCTCCAGCATCCTCTGGGAAATCCACCCAACTCTATGTTCCTGGCCTGCCCTTGATTTCAAAGCTATAATGTTC-AATACCAAGTGGCAAGTGCCATGTATAGGATGTTAGCATCGGGAAGCAATTCAAGAGCTAGAAGGGGCAGAGACAGCCCCTGGGAGCAAAAGAAGCCAAAGCTGGTTAGCTAGGAGAAATGTGGATGAGGTGGGCTCAGGTGGCTCCAAGCGTGTAAAGAATGATGCTAAAAGCAATTGCGCTTCTACTCAGTCAAGAAACAGACACAGTAGACCTGAACTGCTAAGAACCACTTGGCACAGACATTCAGAAGGACTTTG--------TAAATAAGTGAGGTTAGAGGCAACAATCATGCAGTCTCAAAGTTGGAAGATGTTGATTCAGATAAGCTGTGTAAAAGCAAACACCTTGTCTGGAACAGACCC--TAACTAGCTAtcttacctctatcactagcttgcttcagaacatgagctaagc-ccactgctttggtttccttatctgtcaaaagggggggttCAAAAGATGTGGCtac a score=14173 s mm7.chr9_random 185905 1124 + 9745104 TCAAACTCCTTTTAAAAACCTTGACTTTTTCTAGTCCTCTAGCCTGGGAG---CAAGCGCCCC-----CTGCTTGGTTTCCAGTGAGCATCTCC------TCTCCTCCAC---GGGAAAAAACACAGGTTAGGAAAC--ATCCATTTCTTACTG-TTGACCCACTTTGTAGAACACTCTTGTGCAGGTTCAGCACGGTGATTAC-TTTACAGATTTGTGCTTTTAGGGCATCTGCAGGGGAGTTTACCCCTTTGGAGACTG-GGGCTGTCCCTTCCTCAAGGATAGCAGTTCGTTTAAAGGTAATGACCCCAATTAAGATAGCCAACATGCCACCACAATGACTTCATTTGGTTACATTTTAGTTCAGTAATGCCAAGGAACCTTTGGAAAAGCAGCCCATGAATATGAAGGACCACGAATACAGACTGATCCACACGTCTGTAGCGGGGACAGTGCTATGA----------AAGCAGGGACAGAGTCAAAGGCCTGGAGTGGGGGACTC---GGGCACCAGA--------AAACTAAGCACAGAGGTCTAATGAGCACCAGAGGGAGATGTTGATCCTGAGAAGAGAGAGATAGCG------CTGCCAGGGCCAGCCCATTGTGACTCGGTAAAGTCAGCACAGCGCTAGAAAAACATTAAAGATAATCTTGCATGTCCAA-AAAGAGAGGCTGGCTTTCATGAGA-GCAGCAGCTA--GGCAGAGGAAGCAGGGAGGA--CAGAACTGCCCCTTGTTTGGCTCTGCAGCCTCAG-CAAGCACCTTTGGTTCCCTCTAGGTTTGCTCTCTTCCAATTTACAGAATGGAA-ATTTCAAAGATCAAAGTCCAAAG--TTTTACATATTATATGTTCTGTAGCCAGATGTTTATCCCCCAA---TTTTTTATTTGGGAAAAAAAGTTAGGTCTATAGA---AAAGAGAGAGCCCTGGGGCTAACAATAACCCCCAAGCTGGACCCACCAGTGACTGACATCTGTATCCTG--TCTGCTTCATCTTCCTGACTCCTTTA---------------------------------GCTGATGAAAGACAGGAGGAAACA---CATGCATATATAA----TTATACTTCATTAAATCA-----CAGACATTTGTGACATTTCATCATTAAATATTACAGCACATGCCTCCTCAGATGAAAATTCTTCTACATCCACCACAGCACAACAACCACACCCCAACAG s bosTau2.chr10 35991946 1176 - 70001009 TCGAAACTTCTTAAAGATCCTTAGTTGTTTTCAGCTCTCCACCTTGACAGGTTCAAGCCCTGCAGTTTTTGCTTAATTTTCATAGAGCATCTCCACCACATCTCCCTTCCTTTGTGGAAGAGGGCTGATTGGGAAACCTGTTTGTTTTTCATTGGTTTACTC---TTGCGAAATGTTCTTGGGCAAACTCAGCCTGGTGGTTTTACTTATAGATTGCTGTGTTTCAGGC---TACA-------------CTTTGGACATTGTGAGAAGACACTGACCTGTGTATAGCCTTTTGTTTAAACCTGAGGTTTCCAATTAGCACGGCCAAAATATAATTACGTCGACTTGGTTCTGTTATGATTTGTTTCA--------AAGAAGCGTTTTTAAAGTCAGCCGAAGAATGTTAAAGAAACATGCCATAGCCAGGTCAGTGAGAGTGGCACCAAGTTAATGAAATGAGGAGACAGTGAGGCGGGGTAGACGTGACAGGGATTGAGTAAGAGGGCCTATGAGCACAAGGCGTCCTGTAGTCTAGACACTCGTGTCTAATGAG-----GAGAGAGACAGGGAACC--AATATCAAGGGCTTGTGTGTGCCCTGCCTTCCCCCAGTCATTTTGATATGGAAAAGCCAGTGTGATACTA-AAAGAGATTAAAAATAATTTTACATGCCAAAGAAAGTGAGGTTAATTTTTATGAGACACAGTAAAGAATAGTGGAAATAACACCAAAGACTCAGTCCTCTTTCTTGTTAA---CTGTGGTCTTAGACAAG--CTGTTACCTTCTTTGAGTTTTA--ATCCTACAATCTACAAAATGAAAGGTTTAGAAGACAAAAGTCCAAGGACTCCTCCAGGTCTGATGGTGTCTTGTC---TGCATTTTCACCAATTTTTTttttttttttgaaaaatttcaagtctatagacttaaagtaacatccatat-----------actcttcacttagatttaccaattgtcaacattt---tgctgaatttgctttaactttctttctctgTTGCTATCAATCTATCAATCATCTTTCTATTCATATACAGAGGAAATACAGGAGAAAAAAGTGTATGTTTTTATTATCTGTTATTGTCttttaaattatgttgcagacattcatgacatttcatcactaaatagttcaccatgcatctcctgagaataaagatcttctacat-aaccacagAGTCACAATCACATCCAAGAAG a score=6880 s mm7.chr9_random 188111 775 + 9745104 TGTTTACTTCCCTAacttacgttcctcaagcttccgtttctgcatccataaaataaagacaaataacgcccacctca-cagggtgttctgCTCAGGAAATGTTGGCCGAGTGA----ATCACTGAGTTAATTAATTTGCTGGGTAGATGAGTCAGAGTTCTTGGTTGCAAGTACTAGAAACTCTAGATA--ATGAACTGGGATGGAGAGAGAATGTATG-----GACCAAGCAGCAGTGAGCTCACTACCCAGACCAGGAGGCCTGAGAGCAGGGTGGGGCATGTGG--CTGAGCCTGGGCACTCATTAGTGTCTTACCACAGAAAGAGAG----GGTTATGACACAGGAGCTCTGTCCTGCCAGATA-------TACCTACTCTCTAGGGCT----------CTGTGTGGCGCTT-----------GGCTCCCTTGCTAA----------------ATAGAGGAA----AAACAGATTCTG--------------GTCTGC-TTGGTGGTTCTCCTGGTTTGAGCA---------------ATTTGTACATTCAACAATGTGAAGAAACTGGC-----TCTGAACAGATTATTTTTTCCTTAGTCCAAGAATCCTGTTTTAAGCAGTTGTAGTTACTGTTTCCACTGAGAACTTGAGGCCTAATAT--ACACTGGAACTTAGTGCATTCCCCAAAAGTGAAGATatgggtgggtgggtggatggatggatggatggatacatggataggtgggtgggtggaCAAATAGCTCAACAGAAAAAACAACAGAGAAaggagaaaaaggaggaggatggggagaagggaagaagggagaagagggtggatggagaaagagagggaggggcaaatggaggaag s bosTau2.chr10 35996765 714 - 70001009 TATTGATTTTCAAAacttaaagtccatgagctgcaatttctgcaaccataagatgaagaaatagaatact-acctcagaagggtattttgCTCAGGGAACACTGATTGAGTAAGCGCATCACTGAACTAATTACTTTGCTAACTAGatgagtcagagttcttggttgcaagcaatagaa-ttcaatatggtattaactaaagcaggaagggagtctaGGCAAGATACCAAGGAGAACTGGAC---------------AGAAACTGAAGAGCCAGCCCAGGAATGTGGGCTGGAACCTAAGCA-----------------GCAGGAAGACAGCTAAGGTCCTGCCACAGGAACAGTCCCTTAGCGTGCAGGGCGCGCACCTCCTCCCTCTGGCCGCCCCCGCTGCTGCTGGGCCCTCCACACTGTGCCAACTCATTTGCTAATACAATGCTCCTGTCCAAAAAGAAACTGAAATTACATTCTATTTCTGGGATACAAGTCTGTACTTTTGGGTCTCTTAGCTTCATCATCCAGTGTTTCCAAAATGTGTGAATTCAAATATGTGAAGAAATTACCACAATTTTGAAACGACCATTTCTTCTACCACCTGAGAA--------------------ATACCTGCTTCTGCCAAAGATCCGGACCTTTTTCTGAAGATTAAAACTCAGT------------ATTGAAAAAa------------------aatagatgggcagacagatggacagatag--------acagataATTCAG-AAAAAAAATAAAAAAGAAA-----------------------------------------------------------------------CAACTGAAAGAAA a score=8029 s mm7.chr9_random 189003 715 + 9745104 TGTAACTTGGGTAGTGGACTTAAGGGTGGGAGCATCTGAACAAAGAATTCAAGCTCAAGCTGTCTAGCACCAAGCCTGGAGGAGAGGGTGATAGATTAGGTAA--TTTAAAATTTCCTCTTCGTGCCAGAATTTTATCTATAGAGACAACATGTTTCTTGGCAATGATCTCTTAGGGAACGCTTCAGCTAGGTTTGCACGCAAGGTGCTGCATGAGCCTGCAG----TATCTGCAGAGACGGTTTCTTAGCCTTAGAAAAAAGAGCCCGTGCCTGAAATACTTGCGGAGACAGTAATCTC--------TGTATTTT--GGGCAAGATTCCTAT---AGA---GTTCTG-----------GGAGTTGGAGCCAGATGCTTCAAAGCCTCCCCTGTCCCTTGGCACAGGTACA-CCACGGGAATGTGGGCATGCCCTGGGAAGATGTTTGCAGCTGGCGAATCTCCAAAGCCAGCCTTGTGAAGGCTAGGTTAGGCAATGAGAACGTAGGATGGAGGCTCCTGCC--------ACGTTCCAGCGGTGACACAAGTTCTGAAGGCAGGTGCACTGAGGAGTTGTACTCCAGATCGGA--GGGCAGGCTGCCATTTTGTTCTGGAAGGTTC-AATCTCAGCGTGGGCTTT-TGGCAGACAGCGACCTGGAGCC--GCAGCAGCCCGAGTATGCGCAAAAGAAAGCG------ACTCTTCATTTTCTGGAAAAAGAAAAGAAAAGCCAGTCCAATTCCAGCACAGTGATGGAGG s bosTau2.chr10 35997479 689 - 70001009 TACGTCTCAGGCACCTGACTT--------GAGCA-CTGAAGA--------------------------------CTTGGAGGCAAATGTGATGGATTCTTTAAGTTTTAATTTTCCTTTTTCACACCAGGATTTTATCTACAGAGACAA-ATGGTTTCTGGCAATTATCTCAT-GCAAAAGCTTTAG---GTTTTATATGGAAGGTGTTACATGAGATAGTAGACCATATCC-CAATTATGGTTTCACAAGCTCAAAAAA----------GCCT-------TTAAAAAGGAATAAACCTCATGCAGAATGTTTTCTAAAGGCAA-ATTTTTATCCCAGAACTGTTCTGCCAGCCATACTGAGGACAGAGCCAGGTGCCTGGGCTCCTCCAATGTAGTTCACCCCAGACACAGCCTAAAGAATCTGGATGTACGCTCAGCAGCTGCTTCCAACAGAC--CTCCCC--------TCCAGTGCTGGTTGTGCTAG--AGTGAGGCTTCGGCACGGATGTGCCCACCATGAATGGATGAACCAACCTCCAAACATGTTCCCACAGCC-CTGGGTTTAGGCCTCGGACTCCAGACAGGAAGGGGCAGATGGGCATCTTATTCAAGAAGGTTTAAAACGTGACATGTGCTCTGCCCCAGGGAGCATCATAGGCCTCAGTAGTAGGAGGAGTGTCTGCAGAGGGAATTGCTGCTTCTTTTTCATTTTCTGGAAAAAGCTCAG--CAGCCGCTCCAACTCCAGCACAGTAATAAAGG a score=10937 s mm7.chr9_random 191205 638 + 9745104 CTACTAACTGGAACTCAACATTATAATGGGCATAATGGGTCACATCTGATTAAAACATCTCCTACATGTTCTACTTGATTATTATTATAATACATTCTATACAT-----TGATATTTTTACAAATCATGTTCTTTATAACGTCTGCTTATAACATTCATATCTTT--------TTAAGATATTCAATTACTTTTGAGACTCACTTTGTAAGTT--TGAAGCTTTCCATGAGATGGGATGTAA---TATTATATAAAATAGTTTTGCCCCAGACGGATCATATATTCTAAGTAAGGGCAATAGTATCATATGAGACAAATTTATATATTTACAATTTGTTTTCTAAGATTCAGTTTCTCTTCATGAACATGTGTGTTATGATATGAATCCATATGGTCGTTCTGCTCCTGATTCAAAGTCACAAACTCTACCTGTacacacacacacacacacacacacacacacacacacacacacacacacacacaGGGCA--------CACTCGGTGGAAG--GAGCCTATGCTACC------ACCAGGTGGT-GACAGAGTGCTGTGGTCTGTGACAGATATGGCTTCAAACAGTGGGGAACCCAAATTTGTGGGCTTTCCCCCCATTAAttaattgatttattcactttacatcccag---ttgcaaccccacatctccttt s bosTau2.chr10 35999574 576 - 70001009 CTAATAACTGGAACTCAGTGTGATAATGGATATGATGAGCCATGTCTGATTAATAAATCCCTTACAAGTTTTGTTT-ATTATAATC-TAATAAGATCTATATACACTTACGAGATTTTCACAAATTAAGTACTTCCCAGCGTTTTCTTACAACAT---TATTTTTCAAAGAGATTAACATAATCAATTATTTTATAAGGT---TTCATGGGCTCATGAAGCTTCACAT--GATGAAACATAAACCAAATACAAAGATAATCTTTGTTCCAAATTATTCCTACATTTCAAATAAGGATGACAGTATCATGTAAGATAAGTTGGTATCTTTATAGTTTGCTTTTTAAGAATCACTTCCCCAAGGTGA----GGTTTTTAGGacat------------------------------------acaa-------------acacacagagagacagacagacacacacacacacacacacacacaAAGGTGGGGTGGTGAAagtcactcagtcgtgtccgactctttgcgaccccacggactatacagtccacggaattctccaggcca----------------aaacactggag--------tgggtagcctttcccttctccaggggat-----------cttcccagcccagggattg--aacccaggtctccctc a score=3729 s mm7.chr9_random 192057 263 + 9745104 ATTTGTAATCATAGATTCTTGCTCCTTGCCTTGCTAGAG-CATTTGCTGGAATAGTATGATGCAAGCAAGCTTAAGGCACAACAATTTTAA-AGGTTTTTGCACGGGTTTTACACATTAGAG--CATGGGAGAATCTTTCCCTTTTGGTCTCTCAGTGCTTCTTTTTAGCACAAATATCTTTGGCAAAAATATATAAATAAATCACTCAATCCGTAGGCTGC-TTAAGGGTGAAACCCTCAAAAATCTCTCAATTATGTTGGACAAAA s bosTau2.chr10 36000337 245 - 70001009 ATTTATGATCATAAATCTT---TCTATTTCTTATTATAGATATTTACTGAAGTATCA--AGGCAAGCAAGCTATAAACA-AACATTTAAAATAGCTTTGTAGAGGGGTTTTACAAATGAAAaatcactgaaaa------tcccttcaatcactgaa-aattccttTTCTCACAAATACCTT---CAAAGAAACACTGCTAGCTC-----CTCCTTATGGTGCTTTAAATGCGAAACGCCCCCAAA--TCTGGATTATGTCTTGCAAAA a score=4851 s mm7.chr9_random 192386 93 + 9745104 AAAAGGGCAGCCCCTGGGGGA--AGATGAGAATGTTAACATAATTTTCTGAATTGCTTCCCCGAGAAGTCTGTATTCATTATATCCACTTCCTGT s bosTau2.chr10 36001334 95 - 70001009 AAAAGGACAACTCCATGGGGATTCGATGAAAATGTTAATGTTATTTTGCGAATTGCTTTCCTGAGCAATATAGGTTCATTATATTCATTTCCTGT a score=21180 s mm7.chr9_random 192803 1271 + 9745104 ATTTCAAACCCTTT-CTTCAAGACCTTCATTTCTTTTCCATTAGCAGAAGAAATGCAAGGGCCACTCCATCTGGGCGAGCCTCACAAACTCTGCATACTGAAGCACTCCC---------AGCCCCCCCCCCCCCCCCCAGTGTGTGTCCTTGCTGCTTAGCAAGCCGCAGGGAACACAGTGGTGACATAA-GCATGGGCTGGTACAGAGGCAATGAGGACCACGTGGCTC----ATCGCACCAGCAAGCAGACAGGACCACCGAGAAGTCTCT-GGTTCACCCCGTCAACACCTTGAGAGGCTGAAACTGACCTCTGGGCCCCCTCCACCCCACGTGAGGCTTCCCAGT-GACAAGGAGACTAGAAAGAGTCAGCCTCACCCAGGTGACAAGAGGT-CGGACCTGTGAGCAAGGGCAGCAGCTGAAGCTTCTGGAAGGATCTA-TCAGCCCAGCTGAAGAAGTAGCTCA-CCTCTCACATCTCTGCAGGAAGG---CACAGATAGTTTGTGACTTTGAATCAGAAGCAGAGTAAC-CATCCAGGCTCATAATTCAGAGAGAGGGA-------AATAAGATAACTTGAAAAGGGGCAGCCCCTGGGGGA--AGATGAGAATGTTAACATAATTTTTGGAATTGCTTTCCCGAGCAGGCTACATTCATTATATATTATATCCATTTCCTGTATTCTCTCATGTAGTCGGGCTCAGTCATAATTAAGCTTTTCTTCAGCACAAGTATTCTTTCTCCAGTCCCTGTTGTCAGGCGTGACGCTACTCACATATCCTGCAGTGCACACCTGCCACCTGCTTATGA--------TGGAGAGAACAGGAGGATGTG-TGGTGTCCTCAAAAGCCAAGATCAGTTTTGAGCCACCTCCAAACCCTCCAGGAGTACAGC---AGATGCTGGCCATGGTGACG----TGAGACACCTGGCTGGCCGAGCTATCTTGTGTGCCTCTAGGAGACTGGAGCAGGAGGAAGGGCAGCACGGAAACCAGGAGAGGGAACAGACAGTAAGCGAAGGTGGCAGAGTAGCCTGGGCTAGAACAATGACTGTGTTCACAGCAGTGGAGGC--AGGGACTCAGGACAGCTGGGA---------------CTTACTGGTGACACAGAATGATCAGGTTCTGATGTACAATTAATTGTACAGTGTGAGGA-GATATATGTTACATGACTGGCTTGTAAGTCTCTTTAAGAATAGGAGTCTTAGGAAGTCAAGGCAATTTTGTGCTACTGACAGACTCTCTGTGGCTCAGACCTTCCTCAGTTGGCAGGCAATAAAGCAAAAGGCCACCTGGATAGAATGGC s bosTau2.chr10 36000782 1231 - 70001009 ATTTCAGACTCTCTGCTCCAAAACATTCATTTCTTCT-CATTAGGGAAAAAAAGGCAAATGCCTTGTCATCT-GATGAACTGTACACGTCCCATGTATAGAAATCCTCCTTTAAGCATGAGTCTACTGCTAGGTCAGGGGTGTG---CTTTATATATTACATGGAGGCAGAATATACTGCAGATATACAATGTGTGTGCCGGTG-AATGGTGATGCAGAGCAGGTGGGACCAGTATTGTAT--GTAAAAAGACAAGGCCTGTAAGAAGTCCCTCAGTT--CCCCATCCTGACTT-------CTGAGGCTGACCCTTGAGGTCTCT--------GATGAGGCTGCCAGGTAGAAGAGAAGGGGGAAGGAAACCAGCCT----GGGCTGACAGCGGATGCTGACTCTGGAGCAAAGAC-----CAGAGGCTCCAGGAAGGCTATATTTAGCCCAGCCCTGTTAACAGCTCACCCCCTTGGATATCCTTAGGAAAGTAACAAGGAGAGTTCTTGACAGTGAACCGGGAGTGAAATAACACGGACAGGCTTATGACTTGAAAAGAAGAATACCTTTAAGGAAACGACCT-AAAAAGGACAACTCCATGGGGATTCGATGAAAATGTTAATGTTATTTTGCGAATTGCTTTCCTGAGCAATATAGGTTC-------ATTATATTCATTTCCTGTTCCTTCTCACATAATT-GGCTCAATCATAATTTAGCTTTTGTTTAGGACACACATTCTTTATCAAGTTCACGCTCTTGGTCAC-ACAGCACCAGCAAAGCCTGCTCTCTACACCTGTCCCCTGCCAGTGCCTACTCATTGAGGAAACCAACAGACTGTGATAGCGTTCTTAAAAACACTGGTCTGGTAAGAATTATTTCCAGACCCTCCAAAAGACAGGCCAGAGATGCTGACCACAGAGGAGGCAATGTCACACGAGGATGGTTCTCTTGCCCTG-GGGCTGCGAGCGGCACAGACAATGAACAAATGCAGCAC-----------GATGGAACACACACTA-------------------------CTAGAACAACACATTTATTTATTGAAGCTGAGGCCAGGGAACAGAAGACAGCTGAGAAATATGGTCGAGTTCCTAACT--TGACAATGAATAAGCAGGCTCTAATTTACAATTGCACG---GGTGTGAGACTGCCATATGTTATGTAAATAGC-TGTGTGTCCCTTTAAGAAAAGAAGTGGCGTGAAGACAAAGCCCTTTTGTACTACTGACTGA---------------GCCTACCTTGATCTTCAG-----AAAATAAAAAGGCACCTGGAtagagctgc a score=15028 s mm7.chr9_random 194250 929 + 9745104 CAAAGGCAAACACTTACTGGCCAACCCTT-ACCTGAAGAATGTAATCTCTGTAAATAGGAACAAGGG------GAGAGAAGGGCAGAGAAGGAGGGGAGAGA------CAGGTGAGCATGCTCATGGAGTGGTCATGGATCTATGGAGAGCAATTGTGGGAGG--GAATGAAAGCCTTTAGCTCCTGAC---------------CCTTTGTTTCCATTTGTCCAGGTAATGCTGTGGGATTATACTCTCCACTATCCCTTGTGCTTCTTGGCTGTTCCATCCGGCTCAT------------AGGAAACTAGATCTCCTCACAACAGTGTTCAAGCAAGTACAAATGGAC-------ACCTCTATACCCATG--------------GTGTCTCTGGCCC------AGGAGTCAGCAGTCATGTGTGGGTTATGGCTCCACCCAG--TCTCATGTCTCTGTAGGAACTGGGAATCCCT------GCAGGTGATGCACAGGTGCC--TGAGGTCAAGGCAGA---CTGGAGAGAATGGGATGTGAGTGGGATGAAGGCTCAGAGCAGCTGCCACAGTGCACCTGAC----------GGTGAGATAGAAGTCAGAGCTCAGTTCCTAGCAAGGA--AGAAAGCTCCCCCTGTAGCCTCTGAGAATG-TGGTCAGCGCACAGTAGTCTTCTGACAG----------AATGGGAACCAGGCCAATCAGGGCAGACACATAGTCAGAGATGGAGTGCCATCCT---CCAAGTCCACTGAGGGACTGAGAGCTGA-GGCGCCTGTGTCAGTGTGGCAGGAGCTTGTCCTCAGGTGCCCCCTTAAgtcagacacacttctaaactctatatttagagtatttattttaacactccacagaaatgtcaggaggttccttatgaattt----acaaagatatgagcacagagaagattaggaactcaaccagtgtcaacactggcaaagaata-----------gaatcaggtttgggatatgggt-gcctgaccctaG---------------CTATGGAGAGCCTGATGGACAATCAG s bosTau2.chr10 36002908 1035 - 70001009 caaagacacaggtttacttgctatcccttcatctgggagggcaagcctaggaaagcaggaatgagggaaaagagggaggaaggcaggaaaggaggagaacaattaccacaagagaaggtgctctcaggctagccaTGGACTTGT----AATAAGTATAGCTGGTTGTTTTACAGCCT------CTTGACAAACCAACCAGGAGACAGTAGGCTccattgg-ccaaacattcccatggggttttaaccctccct---ccctgcacttcttagttgttccacctggcctttcagaggccaccaaagaagccagatcc-------ATGGCATCCAGACAAGTGCACACGGGCCGGTAGCATGTCTGTGTGCTTGTACATCTCCTGGCAGTTTCTTGGGCATTGCTTGGGGAGCCAACAAGCATGTGTAGATGTTGGGTGGATCCAGAGCCTCAGGCATCAGTGGGAACAGGGAATCCCTAGGGCAGGAAGTAAAAGACAGGTGGCATGAAGAATGAGGCAGAATCCTGCCAAATCATGCCTGTGAGTGACAGGAAAGCTTGGAGTAGTTGCCACTGAAGGCCTGGCCAGCCAAGCAGATGATGATGGAGACAGAGCTC-------AACAAGAACTGGAACTTCTCCTCTGGGGCCTTGAAGAATGTTGGTTGGTGCCAGGTGATCCTCTGGAGGGCTATCAGTAAATGGCAGCTGGACCCACCTAGAGAGATGCATAATTGGACTGGGCACATTTTCCTATGTTGAGTCCACAGA---ACTGAATACTGACAATGACTCTATCAATACAGCAAAaacatttactgaggtggtacccagtgccaggcactattct-aatgctacatttatgttattcatttta--atctgacagcggtatcagaaggttcctggtgattttacagacaaagatactagcacagagagggttagtaactcagccagcaccacagttggcttttgatataaagctctggggagctggttttgaatctgggtcatctcactctggtgtcagttcatttaactaTCAAAAGCCCACTGAATGATCAG a score=2453 s mm7.chr9_random 196871 42 + 9745104 GACAGGATAAAGAAGAAGAGGTAGAGATATTAAATCTTCACC s bosTau2.chr10 36005362 42 - 70001009 GAGAGGATAAGGAAAGAGAATTTGAGTTATTAAATCTTCATC a score=5210 s mm7.chr9_random 196995 355 + 9745104 TGAGCTTCTTAGCTCGGCTTCATTTCCTCAATGTGAACTTACAATCGTTTTTTAAATTATGAACT----------GTGAGTAAGGCTGTAAGAGGAATTTGTGAGGTTAAGACCAGAGCTCTACAGATC-CCCAAGTTC------------------------CATGACC---CCCACACGTCTCCAGCCTTTGACCCCACATCCATGCCATATTTCTGCAC--CTTCTTTGTCTTTA---------------------------TCCGATACAGATTGC-CATACAATGCCTCAACTTACTTTCTGTCACTGACCTTCACGTCTCAAATGCTCTCTTCCCCTTTGAACTTTTCTTCAGCATGTAATTCAAGCGGGGCCCAGACACATGGCTTTAAACCAATAAGTAAAGAAAATAGAATCTG s bosTau2.chr10 36006167 411 - 70001009 tgagtgactGAACTGAACTGAATTTCttaattatgtatata-attaattttttaaaaatagaacttattttttaaaGAGGGAAGACCATAAAAAGAATTCATGCAATTAAGAATAAAGCCACATGGAGCTCCCAAGTTCTTTTCACAGTTCTTCTCCTTGGCACTTGACCAGCTTCATGAATTCCCATCCTTTGACTTCTTACCTGTGTCTCCTGGTTGCACTCCATCTCTGGTTTTGATGATCTGGTGGCATCTGGTTCCCCATTCTGACATCCCCTGCTCACACAACATCCAAGCTCACTTTCTGACACTGACTTTGATAT--------CTTCCTCTCCCCCTGCCCATTTCTCCAACTTATA---CACAAGTGGCTCAGAAGTGTAGATTTAATCAAGAAATTATAGGAAATATAATCTG a score=5212 s mm7.chr9_random 198246 225 + 9745104 AATTAATTTGTTATTACTTAGTAAACACTGGTCATTTGGCAGACAAA------TCAATGAAAACAGGGGCCAAGGAGTAAATGCATCATAAGGCTTTTGTTGGCAAAAGGGTTGGAAATCACAGAACCAGGGCATCCTACCTCCTTCCAGATCCA----GCATCT----GGGATGTTTTCTTCCAGAAACAGGGAAGAGGAGCAGTGTGAGC---------TGCTGGAGTGGCAGCTGTGGTGACAGC s bosTau2.chr10 36012642 245 - 70001009 AATTATCTTATTATTACCTGTTAAATGTGGTTTATCTGGGAGACAAAAATCTTTCAA--AACACAGGACCTACAGAATAAACTCTGAAAAGGGGTTTGGATGGTGAAAAGGTGGACAACCATTGAACTAGTTTCTCCAAGCTCCTT-CAGCTCTATTTTGGATTTTGGAGGAAGGGTGTTTGCCAGAGACAGGGAGCAAAGGTGTTTTGTGCATTCCCGTGTGCTGAGATGGCAGCATGAGTGACAGC a score=4424 s mm7.chr9_random 198576 332 + 9745104 AAGCCACCGAAGAATAATGTGCCTTAAACGCCTGTCACTT-GGTTGTCTAGTATTTGGTGATTTTGTGAGGGTAAAAGCCTTGCCCTAGTCATTATGAGTCCAGGAGGAGCAGAGGCTGATAGAATTGTGTTCTACTGTATGTGAGTCATGTCTCAATAAAGCTGTCAACACAAATAAAGCGTTCGAGTCCATGTGCCTCTAATATCAGCTCTCACTATGGACTCTGAGGCTCATCAATAGAGCTTATTGCTGCGCAGAGGAAAGTGGTCCCTGGAGCTTCAG-----------TCTGATCCTGCTTAGGCCACTCAGTGTGTC--CTTGTTGGCAGTGCACACAG s bosTau2.chr10 36013194 301 - 70001009 AGGCCAGTGCAAGGCAATCTAGTTCATAGTCCTGTCACTAAGGTCATCTTTTATTTGCAACACAGGTGAGGTCAAAGCCACAGTCCTAGTTACTCCTGTTCCAGGACAAACAAAGGCTTGATGTGGCTTGTT--------------TCACCTCCCAA-------GTAAATTCTTATGAAGCACTT-------TGAGTCTTCAGAGGCATCTTCC-------------GGGCTCAGCAGCAGAGCTATTTGCT----AGAAGGAAGGGTCACTTGGGGCTTTGGTTCTAAGTGGATCTGATCCTGCTCGGGGTGCTCAGTATCCCTACCTGTGGGCCATGCACACAG a score=2834 s mm7.chr9_random 199731 78 + 9745104 GACCAAAGCAATGTGACTTATGCACAAAGCTCTTCTCTCCCTGAAGAAGGGTTTTGTAAAGAAGCCTACTTCTGGCCT s bosTau2.chr10 36013712 78 - 70001009 GACTATGATCACGTGGCTGATGCCTAAAGCCATTCTCCTCCTGAAGACAGATCTGGGACAGAGATCCACTCATGGGCT a score=13526 s mm7.chr9_random 200049 372 + 9745104 GCGCATGGTTTCTGAGGGAGACAGAAGAGCCAC------------------AGGCAAGCCCTCTCATCATCTGCAGTGCCCAGGATGCCTGAGGCCGCAGATGGAGTAGGAAGGACAAGAATGCCTTCAGGA------GACTGAGGAAAACCAGAAGCAGAGGTACAGTTGTGGTGC-----CTTTGATCTGTGTACCACACGCCCATCTCTCCACAGC-GTGGCAACCAGCCACGCATG-----GCTGATTAAGTCCACAGGTGCATT-TTCACATGTCACCAGTTATTGACTATTATCTCTCTCCCCACAACCAGCCATCTGCCCTGGTATGCCAGATCAAAATAAATCAACAAACAAAAAGTGGCAGGCAGCTGCTACCTCAGGGATATTGCAGCCAGTGCTAGA s bosTau2.chr10 36016292 398 - 70001009 GTACATAATTCCTGAGAGAGACAGAAAGTCCATCCCATCATCCAGAGGTGTAGATAAGCC-TCCCACTACTTGTAGTACCTAAGG-ACCTGAGACCAAGGCCTTGACTGGGAGGACAGGGAGGCTTGGAGGGAGCTTCGAATGAGGAAGAC---AAAGAATGATAC-GCTGTGGTCCTTTTTCTCTGATTTATGTGATGCATGAC----TTTCCATAGCCATGGCAACTGGCCAAAAATGATAAGGCTGATTAATTCCACAAGTGCATTATTCACATGTCACCAAATATTGACTCTTACCAACCTCCTTCCCCTCACCCATCTGCCCTGATGTGTCAAATCAAAATAAATCAACAAACAAAAAGTGGCAGGCAGATGACACCCCAGGGATGCTGCAGCTAATTACAGA a score=893 s mm7.chr9_random 200681 82 + 9745104 tatagtcccagTTCACTAGTAAGTTTGAGTGTTCTTTCTTCTTCCTCAGGTGACCAGGTGGCA-------CTGTGTGTGTGCGTTTCTC s bosTau2.chr10 36017049 78 - 70001009 TATGGTCTGAACTC-----CAAATT--AGTGCCTTTAATCCCTCCC----TGGCCAACTTGcacttacagctacctgtatgcatttttc a score=22052 s mm7.chr9_random 200799 922 + 9745104 atgagaca-------------------aggatggctatgaatactgcctgaccaaaaaaatcataaatgtatgtaagacactcgtctgtgtgtgtgtgtgtgt-gtgtgtgtgtgtgtgt--------gtgtgtgtaactcgattgcatggt----tctt------------------------gaggttgaaccttgaaaagtccaa--------------------------tgctgggttgcaatgtcaaaaggCAGTCATGCCTG---------AGAGGGCTAGTCATTTTTCCTGCATTCGCCCACACCAGCTCGTACG-CGCCACGCATTGTGGATTTTGGAGCCTCCTGTTCTCTTTTCTTTCCACT-----CTTGTTTCTGACAGCTCTCCACAGAGGCCGCT--CACCATCTCCCATAGCCCTTTCTCCCCTGAGTCAAAACCCATTAAACTCCCCCTGCCCAGAGCCATGGTTAAAA------GCTGCCCCAATGGCTTGGTGGTGGGGAGTGCCACCCTCACATAAAGTGCCTGAAGAGACACAGAGAGA------TGCATTTCGCTGGCCTGCTCATTTTTAAAAGCAATTTCTAGCACTTTTCCCCTCTGCTGCATCCCACCAGGTGACAGGAAGGCTTAAGGATTAATTGGTTGTGACATCCCAAACATCTGCTCCCCGTCCCTATGGAGGGCTCTTG---------ACCAACTTCAGGCTTAGCCTTAAGTTCCATGACTTTGAAGATGAAAACAATAGCCAATGTGAATAGAAGCAATTTCAGTGGTTTGTCCTCTCCATCTTCTGAGGCTGACAGCTGAAGGGAGCCACAGTCAC--TCACTGGCTTGCAGGTGTCACAGCT-TGCTTTCTTCCCTTCTGGCCT--TTCTGTGATTCAAGGACATTTTTAAAAGTAGCTTGGGGCTGGTGAACAGCTGGTTGCTGCTTCCTTCAAGAACATGCTAAGAACAGTGTGGCACTGGCTTGTG------TTCTTTGCTTTTCTGAGGGGTGTGTTTAAATGTGCCAAATG s bosTau2.chr10 36017161 1027 - 70001009 atgggacaattatggtacccagctcacagggttgttgtgagaaatcaatgagctaacacat--gtaatgtactt---acagtcactttggtacgtatgtgcccagtatgtgtcggtttattatCAATATTGTTGTTATTTTTATTGCACGGTATTGTCTTCTTTAGCTGGATGAAGGGAGTGTGGAGGTCACAGATTTTATAAGCAAAGAGGATATATTTGGGTGTATGAGAATTCTTGGGATCTAGTGCCGAGAGAACTACATTTCTACTCCAAGGCAGAGTGTAAGCCATTTTGTCTACACCTGTCCATACCAGGTTGAACATTTCCACGCCTTGTAGATTTCTGAG-CTCTTGTTCTCTTCACTTCCTTCTGCCTCCTCTCTTCTGACAGCTCACCAGAGAAGCCACTCCCCCCACATTTCAGAGCCCTCTCTCCACTGAGTCACAAGCTGTTAGACTGCACAGCCCCACAGCAGTGGTTGGAATGAATTGCCACACCAATGGCTGGGTGGTGATGTGTACCACAACTGCAGAAACT-CCCGATGAAGCATAGAGGGAGACGGGCTCATCGCTCCAGCCTGCT-ATTTTTAAAAGCAATTTCCAGCATTCTCCCCCTTCACTGCTTTCCACCAAACTATGAGAAAACATCACAATTAATTGACTGGAACATTCCCAACAGCTGCTACCCAGCTCCATTCAGGGCAAGTGGTACACACAAATGACTTTAAATTTAGTCTTACATTTTGTAACATGGAAAATAAAACCAATCACCCCTGTGAACATGAGTTA------TGAGTTTCCTTTTCCAGCTTCTG-----------TAAATATGACTAAAGTCTCAGTCACCAGCCTGAGTGTGTCACAAATATGCTTCTTTCTCTCATGACCTTCTTCCGTCACTGACTG-CATTTTCAAAAGTGGCCCGAGGCTGGAGACCAGCTGTTCTCTGGTTCCCTCAAGAGCTGGTTGCAAACAGTGCATCACTGGCTTGTGGGTTTTTTTCTTGATTCTTTGAGGGAGGCATTTAAATGTGCTAAATG a score=25033 s mm7.chr9_random 201941 2522 + 9745104 CAACAAGAACTACCACAG----GCCCTGAGCAATG---AGTGGGACATATTGG-GGGACACAGTACACCCAGGAACAAGAAGTTCACCAAGAGCTCCAGCCTCTACAGGGAGTGCAGGGAGAGGTGTTACAAGCAGCCACCAGGAGGCAAACATTTCCAGTTAGAGATGGGAACTGGGAGAAAGTTCCCAGCTA------GGAGAATCTTGGTAGAGCCCAAGAAAATGCCTCACAAAACAAAGAGCTTTCAATATACACTGTCCTGAGG--AACACAAGGCCAGCTCTGGATCCTGGCCAGCTCCACCTTTACC-------------------------------ACTTGGGGATGCCTGGTG----AGAAAAGAGGTAAAGATCTACCACAGA------------------------TTTCTTGAGGCAGACAAAATTGAACTGAGACTGCGTTTTGTGTATTAAAGTGGCCACATCAATCAACAGTGAGCTGGTTCATTACAGGCCTGCTGGAGTGTttggttggttggttggttgggtttgtttgtttggttggttggttgatttgtttggttgtttggttggatttggttggttggttggttagttcgttTGTAACTTGGGATGGGGAGCACATGTCCATCAAATACACTTAAAGCTGGAAAGGAAAATAAACTCACAGGCAGATCATCCTAGATGTCAGGCTGTGGTCTTGCCGGTCACAGACACCATAGCAAGGAG--TCCAGGCCCTGCAGACCTCAT------------------------TCTCCCGTGGAGCCTCAGGAACAGGAGAACC---ACAGAAAGCTAGAGTTGTAGGACTGGGGTGTGGGGATGTCCCCTCTGTGATGAGAACTTTCTCTGCTTTC-ATATGAGAGCCCCAGCTAAGCCGCCACTTGAAGGAGTGACAGAATTCCACTTTATTTGAAAGACCC-AGGACTTACTTTTTGTCTAACTGCAGCTACTCAATTGAGGAACAAAGG-------GGACGAGTGATCCACC-----------AGGAGT-AAGCAAGAATCTTGACTTAGAGATCCAGGCCCCCTCCACAGCAACTTTGACCTCTCATCTAGGATCTTTCGTG----TCATCAATCAAATTTCTGA-------GGAACTGTTTCACTTTAGACTTGGCA-------AATAA---TAGAAATTTTTTTAAAAAATGA---------AGATCAGTAAGCAGAAGTTGGAG---AGGGAGGATCTGT---AAGACATGGTGGTCT-CGCTGCTTGAGA-CAAGCTTAGCCTGTGAGGTCCTTCTGACCTTCACAGTGCCAGGTCTCCAAGGGTGTCTATGGAAAAAATGGATTCTCAGTGGCCATGTCATCCTAGGATACAACCA-AGACTCTGGATGTTTAACAGTGGTTGTAG-TGATTTAGTTGCCATGGTAAGTTTGGACTCACAGAGTGATCATATTTATTGGGCCAAGAATGT----TTGGCATGG-----GTAGATT----TTGGCCCTGGTTGCTCCCAATGACTGAAGGCCATTCTGAAG--GGACATAACAAGGGAGCCTGCAGGCTGAGAGGTGACTCAT-CTCTTTTCAGCTAGAAAGGGCAACTTCCAAGCTGTGGAAGATTCAAATGGCAAAGGAAGGCAC-------CCAGGACATAATCTATTTCTAGAAAACAACTAGGGAGAGACAGGATATGGGTGGAGAGATGGCTCAGTGGTAAAGGGCACTCCCATGTGCATAAGCACACACATCCATAATTAAAAATAAGTCTATAAATGAGGTAGGACATTTGCCTACACAATGGATGGCATTCAGCATGAGGT--------------------GGCCAAGAGATGTTCTAAAAGGGGTACTCTATAGCTTG--AAACACAGAGAGGTCAAAGTTC-AGGTGATGAGG-CTACTGAACTAAGCATATAACTCATAATCCTGAGGGCAA-AGGTGTCAAAGAAG----------CTGTACTAACTTGGGAAGGTCTGGGTA---CTCCAG-CATGGACCCTTACAAGAAG-TGGCTCTGACATCATAAGCAGCACAATTCCCAGAACATATAAATTCTAATGTATACTACCTTTGCTCATATATGAAAGTGCTTCACCACCAGGGTCAATTTTGGCTCCAAGGAGGGTGGGTGACAACATATGCAGATGGTCCTTGTGGCCACCACAAGAAGTATGTAGTTGGGTG--------------CTAGGAACACCCAATAGCCCAAGGAGACCATTAACCAACACATCACAACAATGAGCTA----------------GCCAGTCCCAAAATGTCAACAGAGCCAAAGTGGAGAAGCTTGTTCTACAGTGAAGTCGTTACAGAGCCTGCCCATTGTCCTTAGTGAAACC---TGTCCAAGATGCACACAACAGGAGACAGGAAG-------------CACACCTCACAGACCTC--AGCCTGGAGGACC-TAAGGCCTGGGAACTGGATGCTGCTATGCAAGTGTGTGC-AGTCACCATACATCATAGCATAGTTTACTAAAAGGAAAGGCAGTGCTCATCAATTCACTGTATAACAGGCTAATAATAG----CAAAGTGTGCT-----CATACC---ATGCACACCACCCGATGTCT--CCTGGTGCCTCTCACTGTCCCGGGGGAACTCCTCTGCAG--TTGCAGAGCATAGAA---GAACCTTTACATTCTCAG------TCCCAGACTCCAGGACTCTCCTTGTATGGCTCCCAACATGCAATTCCAATTTCTCTTGCAAACCA s bosTau2.chr10 36019838 2523 - 70001009 caacaacaacaacaacaGCGCTGTCCTGGGTCCTGCCCAATAGGACTAGTGGGAGGGGCAAAGCAAGCCCAGGGGCAAAGAGCTGGA-GGTAGATGCAGGATTCCCAGGAAG--------GAAGCACCGCCAGCAACCCCAGGAATGGAGCTGCATCCCGCAAATGGAGGGATCTGCAGGAGTGCTAC-AGCCATGGGAAAGAGAACGCTGGAGAAGCCCAGCAGAGCAGCTCACAGGAAAAACAGGGTTCAATA---GCTGCCACCAGGCAAGCACTCAGTTACCTCT----CCTTTCTCCCTCCTCTCTGACCCTGGAGAGGTCACAAACTGCCCAGTAAACTGACATGGGGGTGGGTGGGAGGACAGACAAGGCATAAAGATTTGCTGTAAAATTTAAGTTCCGAGTTTTGGTTAATTTCTTGGATTGAGCACGGCTGAGTTGTGATTATGTTTTGCAACTTAAACTGACCATGTTAATTGAGAGTGAGCTGGA-AATTAAGAGCCTGCTGGAGTTTTCAGC-----------------------------------------------------------------------------------------------CTAGAGGTGGAGAGAGCATTTCCATTTAATTTACCATAAGGTGGAAAGGCAAACAAAGTTGTGGTTGCTCAAGGCCAGCGACCAGGGCTTGTGTAAGCCAGTTACAACTGCCAAGGCAGGGAGAATCCAGGCCCTGTGAACCTCATGCTGGGTTTGTAGAGCCCTGGATTCCTCTAATGATGCCTCAGGGAGAAAAGGAGCCAGGCAGATGGCCAGAG------GATGGGATTTGGGGGTTGTCTACTTT----TCAGAGCTTTCGCTACTTTTTGTATTGGAGTTAGAG-TATGTTTTCAACTGAAGGCAGAatagaattctataactttaaaaaggtcttaaaaactactttctgtcttaccccatttgaccactggagaaatgaaggcgatagaggggaagagatgtgcccgtgtcaaagcaggacccaaaccagtgctctgactcatagtcctgagccttctcCCCACCACCCACAACCTCCAACCCCAGCATCCACATGGCGCTCTGCTGGCTGATTTCTGACTTCTCCACAACTGTCTCACTTTAGATTTTTCATCTCCAAAATAAATGTAAAGGCATATATGAAACAGGACAGAAAACTAGGTCAGCAAGTGCAGGGCCAAGCGAAAGAAAGGTTTGGGGGAAGAAACGAGAGTCTGAGCTGCTGGGGAGCAAGCTCAGCCTCTGAGTCACCCTTGACCTCAGTGGTGCCA--TCACCTGCGGAAACT---GAAAAGGCAGATTCTGAGTCCCCAGGCCATCCAGATGCACGACCCCGGAATCTGGGT-TTTCACAACCATCCCAGGTGATCTGACTGCCAGGGTGGGTTTGG-------------TTGTACGTGTCAGGCCCAGGGTGCCCCATGCGCATGGTGACAGCACACTGGCACTGCCCCTGGGTCCCCCTCCCCACTGAGGCATACCCTGGAGCAGGGCC---CGAGGGCTTCAGCAGGCTGGGCGGGGACTCAGGCTTGGAGGAGTTTAAAAGGCTGATCTCTAGACTGAGGAGGA----GAAGCTGAGGGAAGCCACGGGTAATCCATG-CAGGGACCAGTTCTAGAAGCTAGCCTAGGAGAGGCAGGGT----------------------------------------------------------------------------------------------GTCTGGCTGCGTGATGGATGGCACAGAGAATGAAGCAGAGGTAAGAGCCAGCCCTAGGCCA------GTCTTGGGAGGGGAGCCCTAAAGCCTGGGAAGTGGAGAGAGGTCAAAGTTCCAGGTGACAGGAACCACTG------------------------TGAGGGAAGGAGATGTCAAAGGATGAGAAAAGGTCTGTGCTAAACTGGCAATCTCTGGATAACTCTTTGGTCACAGACCTTCATGGAAAGGTTTTTGTGCTTTCATAACCAGTCTGAATCCCAGAGTGGCTGAA----AATATGT-TTACTCTTGCTCATCTATGAcagtagttctcaaccaggggcaactgtggcacccagg-ggacatttgacagcatcaggagaaaat-----tggttgccacaaactgagagttggtgggtgtgtgaccctgtcatccatggaaggcaggggagccaggggagctgctgggcacccaaccacaaaagggacttccccccaacaaataaacacccatcccagaaggtcaatagtgccgcagtggaga--------CTATGATGGAATCATT-CAGAGA--ACCCATCATCCTTTGGGGAAACGCACATCTGAGATGCTCATGATAAAAAGCCCTGGGTTAATTCTGTCCACACACACTAGAGTCCTCTCACTCTGGAGGGCAGCCAGGCCTAA-AGCCAGGCACCAGTGTGCAGTTGTATGCTAGCCACTGAGTTTCATAGTGAGTTTTATTAAAAGAAAA---AATAAACAGCAGCACATTTTATATTTGGCTAATGATTGGCATCAAAGTCTGTTGGAGTCATACCTCCATGCTC-CCACTGCACTCCTATCTTGCCATCTCCCACTGTCCCACAGAGATGGCTCTGCAGCATCCCAGGTCACGGAACAAGGACTTTTACATCCTTAACCTCCATCCCAGTCACTAGGACTCTGCTTCTTCAGTTTCCAACAGGCACAGCTGATGTCTCTTGCAAACCA a score=16196 s mm7.chr9_random 206753 384 + 9745104 CAGAGAGACCACA--CCCAGTTTCTCACTAAGACTGTGCAGCCAACTTGCTTTCCACACTGGAGACAGATCTATTTGTTATTTTGAGCTGTGCCTGAGATGACACTTATGACACATAGCAAAGCGGGAATTATCTTTAGGAGAAGAAAGACAAGGACATACTGCCAGTCTGATAAGATAAAAGCAGTGGCAGATAAAAGAATTTATAAAGGGAGCTGCTGGCTCTCTGCCAGGGA-TAGCGTGCA--------CACCGAATAGAAAGAGG-GATGAGAAGTCAAGCCA-ACTCTGTGATGG-------ATGAGTGTCCATAGCCTTCCCAACAAGAATGTTCAGGTCAAAGAGAG--AATGAAACAGAATACTGG-----TAGTTTAGGGACATTGTGTGGCTTTGGATGG s bosTau2.chr10 36022937 409 - 70001009 CAGAGAGCTCAGAATTCTAGCTCTACCTAAGGAGGGTGTTGCCAGATTTCTTTCCACACTGGAAACAAACCCATTTGTTACTTTGAGTCATGACTGAGATGACATTTATGACATATAGCAATGAGGGAATTATCTTTAGGAGCAGAAAGACGAAGACATACTGTGGGTCTGATAAGATATAAGCAGCAGCAGATAAAAACATTTATAAAGGGAGACGATGTCTATCTGCCAAACAGCAGCAAGGAATCTCAGCCACTAAACACAAAGAAATGAAAAGAAGTCAAGCCAGATTCTCTGATGGGTTGCACACTAGCCTCCAT--CCTTTCCTGCAAGAAGATTCAGCAAAAGGAGAGAAAATGGAAAGCGATGTTGGATGTTGGGTTTAGAGATCTGGTGTGACCTTGGACAG a score=4184 s mm7.chr9_random 261983 429 + 9745104 TGTTTAAGAGAGATGTTCTCAGGGATAAAATTACTTCGTTC-------CCCAGTTTCTCTAGAGAACCCTCACATAAAAAGCAGGAACTGGTGGGTACCTGCTGAGCAGACACCCCAGACTCTT---------CCAGCGGCTCAGTGACTGCCTCACCGTTTGCACATGTC---CCGGCTCTCCACTTATGCCCAGTTCTT-----CATCCTTACCACCAGGAACTCTGTAGACATTCCCAGATCTGTTTCCTTGGCATGAGTCAGC---------CTCCCAGAGAC----AGCCGGGGCCAG---CCTGGTGACTGCATAGGGC----AGAAGGCTGCCCAGGATTTGTGCC---------TTCACCATG---GCAAGGTGA----CAAG-------------------GAGATTCCTGAGAAGGTGTGTGGTTTCTTCTACA--------TTAGATATTTGGATCCCTGAGGGAAG-------CAATCTCTTCTAGACCACATGAAAAACAGGCAAGAGTG s bosTau2.chr21 31725826 504 - 49724630 TGTTTAAGAGAGA-------AAAAATAAGCCAGCTATACTCAAGGACTCCCAGTTTCTCTGGAGAAACTTGATATGAAAGGCAAAAGCAGCAGAGGTACTTCCAAAC---CACCCCCCACCCCCAGGCTTAGACCTGTGATCCAGTCACTGCCCTGCTCCTTGGGGATGTCCCTCCACCCTTCCACACAGGCTCAGTTCTTCCTTCCCTCCCTCCTACCTGGCCATCCGCAGCCGTGCTC---------TTTCTGACATCAGTCAACAAACACAGACTCCCAGAAGCTAAATACCTGAATCAGGTATTTAGGTACTGGgaaagctactaagaaagctactaagaCCCCAAACCCCTCCCCAACTCACCATGCCTGCAAGGTCACCACCAAGAGTGTCCGTCCTTGGGGCTAAAATCGCTGGAACGGCACACGCTTTAATCTAAAGTAAGATGTCAGATAGTGGAATCCTGAAGTGAATGAGTAGCCAATCATTTCCAGGGAACAAGATGAGAAGAGAAAAATG a score=4486 s mm7.chr9_random 262611 180 + 9745104 CCCAGAGCAGACAGACAGTACTGTCCCCTACTGTAGAATAGGAAGGCGTGCCATAGAAGATGG-----GTTAGTCTGGAATCAGAAAGGGTATCCTAGGGCCCTTCCACTTTTCGTGGGACCTGAAGCTTATAAAGgtgtgtgtatgtgtctatttgtatgtgtctctgtgtgtgtgtgtgtctg s bosTau2.chr21 31726530 172 - 49724630 CCCAGAGCAGA-----GGTCTTTTCCTCTCCTGGGGGCTCGGGAAA---GGCCGAGAGGCTGGCCGAAATTGGCCCAGGTTCAGGAAAGATTAGTTTAGGTGTTTCTGATTTTCACGG-----GAAGATCATAGGGTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTCCTG a score=4611 s mm7.chr9_random 266457 283 + 9745104 CCCACCCCCATGAATAGGACTGAGAAAAGAGTAATTGGCCCCCCGTGTC--------------TTAATTGTCATTGA-----------GAGTCAC---TG------CAGCTTTCAAGGGCATTTCCAAATTTGGGGTCAGAGCCTGGAAATTGGCTGTGGCAGATCCCAGGACTGGTGGGGTCTGGGATAGCCTTGAATGAGGCTGTCTGACATATGTTCCCATGTGTGAAAACCCAGGACAGGGCAGTGGTGGTTTCTGTGATCTC-AGCTCATCTG-ATAAGGACTGCACAGAATTTCCCTACAGTTGGGCCCTTCT s bosTau2.chr21 31730048 301 - 49724630 CCCTGCCCCATGGGAAGGTGTAGGAAGAGAGTTATTCACAACAAATTTCCTGATAATTGAAGATTAATTTCCCTGGATCGGGGAGGGGGAGTCACGCTTGGGTCATCAGCCAGGAGGGGCCTCTCCAACTTGAGGGTTGGGGGTACTGAAATGATCGGGTCTGATCACAGGACAGGTAGGATCGGTGATGGCCTTGAATGAGACCATCTAATCTGGGACCC--TGTGTGGAGTCCCA----------------GTTGCCACCATTTCTAACCCATCTGAATCAAGGGAGTATGGAATTCACCCCGAGTTGAGGGCTTCT a score=3994 s mm7.chr9_random 274659 222 + 9745104 TTGAAATATAAAATGCACAAAACATCACTCACTCAAATCAAAATGAAGCTAAT---TTTGTTAATTCTGACCACTTAGTTCATTCTGTAAAAAGGCAATTCTCCACTCATCTCGCTAATGTCTTTCGCTGGAAATAACAACTATTAGTTTCCAG---GTCCCTCCTAGACCTCTCTCTGTGATTAAGTAGACCCATGTTGGCATGCTCAATGGGT-AACTATGGTCAAA s bosTau2.chr21 31731723 210 - 49724630 tttaaaCATAAGATAGACAAAAGAGCACTCACTCAAACCATGGT--AGTTAACATCTCTGCTAGCCCC-ACCCCTTCCTTCTGTCTATGAAGA---------CCACC--TCCAGTCACTGCC-----CCAGAGGTCACAATGCTTACACTTCTGCTTGTTCTTTTCAGACCTCCTTCTGTGTTTAAATCAACATGAGTTGACGTGTGCAGTAGATCAGTCATGGCCAAA a score=9471 s mm7.chr9_random 275033 557 + 9745104 AAACAAACAGATAGAGTAACATATACCAAATAAGGCAAGGAAAC---AAAGAGAACAGTCTAAAATACCAATGTAATGAGAGAATACCATATTGACCAAGGGGTCTACTAAACTGACTGACAGCTCATGGCC-AGGTCCAGGGGTAGCCAGGAT-TGTAGGGAGCCACTGTGACTCAGTGTAGCTGCTGACCTGGGCAAACAGGAGA-GCACA-AAGCAGGAAAAGCTGAGAGCCCATCAGGGGATGGGTGCTCATCAGTGTGGCATTAGCACCTGCCTCTGGGAAGCTCCCAGAGGTACTCTTGAATCAAGCTGACAGTTCTA----------------GCCACATCTGAGCAGCCTGACAGTCGAG-CCACTGCC----TGTTGGAAGACACACCCAGGTCAGCA--GACCCTGTCCCTTCCCTGACACGTATGA----GTCATACTGATA--------------GAGTAACAACAACTCAGCAGGAACAT----CTGGGAAT----GGGCAGCATGCcatttaatcccctcacagttt---gcctggcaggggcactatgattggtcccatttcccaaaggtacaactgaggctcaaggaagtgaagtcacct s bosTau2.chr21 31732507 591 - 49724630 aaactaacagatcta-taaaacagatcttgtaaagcaactatattttaattaaaaaaaaatAGAATATAAATATAGAGAAAGAGCCGCCTATC-AGCAGATTGACTGTCCAGCTTCTTCCCGCCCTGTGCCCCAGGGCAGTGGGCGCCTAGGACCTGCCGGGAGTGGCGGTGACTCAGTCTGACCGCTGACCCAGGCGGGCCGGGGAAGCAGGCAGGCAGGAAATGTCAGGCGCGCATCAGAGGAACATGGCTCATCGATGTGGCACCGGCACCCGCCTGCGGGGAGCTCCAAGATGTGCTC-GGAATCAAGCTGACAGGTCCATTAGGGGCTGGCCCCGGCCACGTCTTC-CAGGCTGGCGACCCAGCCCACAGCCAGCGAGTGGGAAGACACCCCCGGGTCTGCAAGGATCCTG---------CAGGGCGTAAGACGACATCGTACCTATGCTGACGATCACCGTAAATAtgagcggctaagcgtggactccacgccaggcattttgaggcaggatttcttttaa--ccctcacaacccccatcctg----------taagattgagcccatttagagatgggaaaactgagggtcagaggagtgaagtcacca a score=31502 s mm7.chr9_random 275590 901 + 9745104 gcccaC-TTTCTGTCCCACTCTCTGGCAGTCAGAAGGTACCACGTGCTCTTTTGGTGTTTCC--ACagggaagtaattt-ctccctattttccagataaagtaactgagacccaaagcggtCCTGAATCTGCATCTGTTGGCGCAGAGCAGCCTTACTCCTCCTCTCTGGGGCCCAACTTGGAGGTGGTGCTGCAGAAATACAGAGAAGG----GCAGGTTGCATAACATGGCT-GTTCTCCTCCAAAAGCTGCAAACACCCACTTTCCCCATTCACGAATCTGGGCAATGAGTGGTGGGAGTCAGGGGAGGATATATTAAAAAAAAAATTGTCTCCTTCAGTCAGGGAATTTCACAGTATAATTATATAGTGAGGACATCAAATTAGCAGAATGAGGG---ACTGTCAGAGGCAGCAGCGAAGCACCACTGTT---GTCCCCAGATTCACAACCACTCACAGCACAGCCTCCTGAGTAGGCTCGGGAACTCTCCTCTCTTAGATCCTAAATGCACGCTAGCGATGGGAGGAACTCTCagctggaggagttctcagcagccatt-gatttcccaaccccctcat-------------------------------------------------gtcacacttgaaaaataacatccccag-----agggctggacagccaagtccagcccca--------------cccaagctctcagaagtctagtgggagaAGCA--CTCCCCTTGGGCTTTTGGAGTCCAAAATAAATGCACATAGAGCTCTCTGCATCGTTACCATGGTTATAGATAACAAGGGCCGTGGCAAAGCACAGCAAATTAGTTAATGATGAGAGAGAAACTTCCAGCAGTGACACATTCTGCTTGAGCGAATGGCTTGCCTTATTCAGTGGCAAGCAGGTTTC---TGGTGCCAAGGCGAGCTCTGGTAGTGAGAGGAGA-TAATAATATGGGGG----AGAGTATGCAAAAC s bosTau2.chr21 31733590 939 - 49724630 GCCCACATTCCCATAACAGTCTCTG-TGGCCAGAAGGCACag-----tctttgcacatcaccctataggaagatacttttctccccacttgacagatgagaaaactggggcccagcgaggttaagA-TCCACACCTTCCCATCCTGAAAAGCCCCGTTCCCCTCTTCTGAATCCCAGTGTGGGGGCGGCACTGGGGAAATTCAGAGAAGGACGGGCAGGTTGCATAACATCTCTTGTTTTCCGCCAAAAGCTACAAACACCCACTTTCCCCATTCACGAATCTGGACAGTGAGTGGTGGGAGTCGGGGAAGGATATTTTAGAA--------GTTGTCTTCAGTCAGGGAATTTCACAGTATAATTACATAGTGAGGACATAAAATTAGCAGAGAGAGAGGAGAGCATTAGCTGCGGCAGCCACACACCACTGCCTACATCCCCACACTCGTCGTCAGTT----CACAGCCTCCCAGGTGGGCTGGGGAACTCTCCCTC--TAGATCCCAAATGCACAC---------------------------AGGATGctcagaaaccccccgact--ccaacccccacacattcacagacagagaagctgaagacccagaggaggagtttgggctagaggtcacac------agtgaCCTGCACAGGATCAAGGGTTGGACCCCTGACCCCAGCCCCAGGCCTTCAGACCCACCCAGCCTCTCCAAAGCCAAGAGCCAGAAATAGACTATCGTCGAACTCCCAGAGTCCAAAATAAATTTGTGTAGAGTTCTATGCATTGTTGCCATGGTTATAGATAACAAAGGCCAAGGCGAAGCACAGCAAATTAGTTAATGATGAGAGAGAAACTTCCAACAGAGATACATTCCGCACAAACAAATTGCTTTCCTAATTCGGCTGTGAGCTGGACCCCGGCGGCGGCATGGCAAGTGTTGGGGGTGAGGGGAGAGTAATTACAGCGGGGGATCAGAGTGGGCAGGGC a score=19436 s mm7.chr9_random 278828 1080 + 9745104 GTCTTTGTAGGTCCTCATAAGTCACTTTTAAATTGTGTAAGCTCTGTGTTAGGAGTTAAGTATCTGTTATCTTCAAGGACTCATACGGTGACGATTTAACCTGCCATATGGTAGTGt-----------------------gggaaacaactagaattagatgagatgatgagggtggg----------------tagagatctataaagaaaaggc--caggcagcttgatgttgccccaaaagcattta----gaggagcaaccacatgagtgcaagg--agaaggtagctatctgtgagctggga---gagtcct---gagaagcccgaagggccagcatcttca--ctggactttccaaccaccagaatacggagaaaacagctggctgttgtttaagctgctgatgtatggaataca----ctcatcatagcagctggaaaaaagcaaggcGCCCCATGGCC-ACCTTTAGTTCACACAGAGAAGC-TCCACAAATTTTGAGATCC---CAGAAACTGGCTC--ACACTAGCAGGTCTTATTCCCCATAGCTACTCCAATAGCTACAAGATGTGGGGCCACCTTTTGGATGACTGTTACTAATGTACCAGGAGCCAGGAAATTGCCTAGTTGTTGCTGGTGGTAGGGAGTAATTACATAGAAAGGAATA-AGACAATATAGTCAGCTAAACACCTCTGATTTCCTGCCCATTTGAGGTTCCTGCTTTGGAAGAACCCAG-------------ACATTCTCA-GACAGTGGCT----------AATGATGGG--AAAGTGGACTGGCCCTGGGGGCTAAACAA-ATCAGCGCTCTGGGGCAGTTTTCCCTACTTG-TTGCTATAGCAACAGACTCCAGCTGCAGGTGCCCACCTGTCACCAGTATCAAGGCCAGACTCTGATTGCATCTGAACAGGACTGTTAGTACGGGAACAGAGAAAACAAACACAGAAAGGTCTCATGTGGCTTGAGGAA---TCGTGGGTCA--CAGTAATTGAGTCCATGATGTGGGTCTGTTGAGATTCAC-GCT-GATGCCTCTATCCCTGGGTATTATGCAAAGCCCCAAGGCTGCCCTCTTCCAACAGCA--GAGCAGCCACAAATGCAAAA-GGTACCAAAATACCACTGACTGTGCAGTGAAGCAATGGTGGGTACAAGA s bosTau2.chr21 31736729 1143 - 49724630 GCTTTTGTAGG---------GTCACTTTCAATCTGTGCAAGCCC-Atgttacagactgaatgc---ttatccacccaaattcatgtgttggagctctaaacccaaacgtgatagtatcaacatttggagctgtggctgctgggaggtaatttgagttagttgagatcatgatgatagaaccctcgtggtgggactagcactctaaaaaggagagacaccagccagcttgctctttctctctctgcacacacaccgaagaaaggccaggtgtgcacacagcaagaaggcggtcatcgacaagccagaaacagagtcctcgcaagacactgagtcagtcgacacctcgagtttggacttcccagtctccaga----gaaggaaacattta----tttcttaagccaccca-gtctgtggtgcagtattttgttctgacagcctgagatgactaagacaTTCCCCAGCCCAATGCCAGGTCACATGGGGGAGCATCCATAAATTTTTTGGACCACTCTGAATAATGCTCTGAAACAGGAATACCTTATCCTCCATAAC--CCTGTGTGTCAACCAGAAGTGGGGGTGTTTTCTGG-TGCTGGCTGCCAGTTGACAAGCAGACAGGAAGTTGCATA-TTGTCACTGGTCGTGGCAGCTATATATGAGGAAGGGAAGGGAGATGATATTTTTCGGTCAA-ACCTCTAATACTGCATCCACGTAAATTTCCT--CTCAGAAAATCCCTGTATCATCCTGGACACATTCACGTGATAGTGCCTGGGAAAATGCAATGATGGAGTAAAGTGGGCTGGCTCTGGGCTCTCATCAGTCTCTGGGGTTTGGGGCAGTTTTCCCTACTTGGTCGCTATGGCAACAGAATCCAGCTACAGGTGCCCACCTGTCACCAACATGAGGGCCAGACTTGCACTGCATCTGAGCATGCCTGTCAGAGTGGGGAAGGAGGGAACAAATATGGAAAGGCCTTGTGTAGTCTTAGGAAAATCCAGGTGGCAGTCAGGAAGCAAGTCCAGGCTGCAGATCTGTGGACCTGCCCTGCTAGACGCCCAGGCCCCTG-------CACAAAACTGCAATGCTGCCCTCTCCTGGTGGCAGGGGGCCTCTGTGAACACAAGGTGGTACC-----CTCACT-CCTGTACCAACCTGCACTGGTGGGTTCAAAA a score=6078 s mm7.chr9_random 279930 431 + 9745104 CCTTATCCACCAACTTCCACAGCCTCCACTCCTGGGAGAAACAGGGGACTTTAGAC----AGCTCATC-TCCACATCTGTGATTTACCTTATTGTTCACCACCAAGCTGAGGATGGGAGTGGGAGCTGTGTCC----------ACCATCTGCTGAAACCATGT--GACTCCCTGTCCTTCACCCATGACC--------TACCCTTTCCTAGCA------------GTGATGGTATGTCACTTACAGATAGCCAGGTCAGAGCTTCAGACTCTATGAATACAGTCA--CAATCATG--GCCTTTGTAAACTTCCTCTTTGATCATTCCTCTCCCTGGGGAGAACTatctagccatccttcacaactgactgtcaccatctagggtcaggccactttctctttcatggttgagttcttacagtagtctcct---tcatcc-------ccattcttgcccacccATCAGGCCCTGAGTCAACTTG s bosTau2.chr21 31738362 469 - 49724630 CTCTGCCCACCACCTGCCATCACCCCTGCTTCTGCCAGACACCACCTGCCATAGACCTGAGGCCCATTGCCCAGATCTGTGACTTGTTCCCACATCCACCTCCAAACCAAGGGAGGGAGTCAGGGCTCTTTCCTGCTCCCCAGGACATCTCC-----CCATGTAAAATCTCCTGTGACCCACTCTGGCCCCAGCACCATGACATCTCCAAGAAGCCAAAGGGCATGTCAGGATGGGTCACTCCCAGCTTGCCGGGTGTGGGGTCCAGGCTC------TGCAGTCATTCACCCAAGAAGCCCTGGGTGGGCTCTTCTCTCCTCCTCCCTTCGCATAGGGAGGGCTAGCCAGCC-CCCTCCTCGCCCCCTGGCCACCGTCCTGGGCCAGGCCTAGTTCTGCTCCCCAACTGGACTCCTGCAG-AGCTTCCTAACCCAGCCGTAGTAACCACTTATTCCTGCCTGCTGGGCCCTGAAGCAGCTTG a score=5675 s mm7.chr9_random 281312 180 + 9745104 AGAGAGAAGACAGTGTCTTTAACATCCCTCCATTCTCCTCATTTCACTATCTCTGCTA--------GATTCCCAAACCTTCCCTCCTCCTCTAGGCCAAGACAAG---GAAACATATTAAC-CAAGCAAACATGCCCTGGGTAAACCAGATAGCTCCAATGATAGACATAGTCATATATCAGTTCCACCCCA s bosTau2.chr21 31738952 184 - 49724630 AGAAAGAGGACAATCACT-----ATGTCCCCATCCTCCTCATCTCCCCATCTCTACCACCACTGCTCGTACCCAAACCCTCCCTCTTCTTCTAAGCCC--ACAAGCCCCACACATACAAACACCAGCAAACAGACCCCTGGCGAACAAGGTATTCCCAGTGACAGG-GTAGCCACATGGCAGCTCTGTCCCA a score=37808 s mm7.chr9_random 282061 1762 + 9745104 TCACATACAGACCAGTCAACATGCAGTGGTAGAAAA--------TAATTCTCCCCTTTtcagagcaagaaactcttctccagaatt----tgattgacttcctctcgaatctaattggctaacattgcctcccatgcccacctttaaaccagtcactggcaa--------gaaacatcaagttccatgatcggcttgagcca-TAAACAATCACACCT---GCTTGACCTAGAACCTATTACACC--------AAATAAACTAATGT-TCTGTACCCCAGGACAAATGATAGCTGTGGGTGGAAAG----------------------AAAAGTCAGTTAGTTCCAACCAGGTGTAGCCAGAACCTCTCCAAG--GCCAGGCAC--------AGAACAGCAGAGTGAGGGAGA-AAAAGGACCAGTAGCAGCTAGTCCCTGGGGAC-ATGACTGAAATGGTCCGAACAGAAAG----------AGAGCAAAGGC-AGGATGGTCAGAAGAGAACAAGGAAAACAGATACAAGAGG--CATCAGAGAGTGCTGGCAGGGGGCCTTGG-AGCTGCTTGGCTGTGG----AAGATATGGAGAACAGATGTGAGGT---ATGGCTTGAGGCTTTCCAGCTGGGTTGGCTTCATTGGTGTTAACCGAGTGAGGCATATGTATGCTGGGAAACCCAGAGAAGCCATAGACACTCATGAAGGACGGgt---------------------------------------------------------------------gccaggggtt-----------------------agggtg-----------------------------------------------tccaggcctttccatgtttgttagtatcatttgatcctcagagcaactctgcaaggctggcaaggtgaagtgtatagtgacactcccattttacaggtgaggacactgTCACT----GGTACCATGGGCTTTGTGCCCTCTGGGTGTCAGGACCAGGAACTGGAATACAATATGGGTAGCGGCAGAGCTTGGGTCAGGCTGACCCAAGCTAGAATCTCTTTGACC--TTTTGTTAGTCTCTGCCCAGAAGAGAGGCAGCTTCATGTTCTGACTTCAAAG-TTGAAATTTCTCCTTTCTCCGTGGCTCACAGCAAAGGTTCTTTTGTTGGTCGGTCTCAAAGGGACCAATTTTCTTGCACTATATTTAACTGACATTTTTTGAAGTGTAATAATTGGACATTTTTATTATTTTTCTCAGAGTAGGGAAGGACTTTATAAGTATGACTCAAGTCCAGCAAAAAACAGCAGCTAAGAGAGAGAAAAGAGAGGGGAgagagggaagaggagaaggagaaagagaaggagagaaaag-tggcaaatttgactttgaaggaataaacattgcaaaga--gtcataaacaaaatcaaaatgcagcgggcggaggaaaatacagaatttgcaattcaaatgccaaacaaaaagctaattattctaatagatacagcactctacacatcaatctggcaaaatgaaataaaagacccacaagcaattaagaaaatgggtaaagaatatgaaccaagcttagtggaagaaaatacaca-gtttctt-aatccatggaa--gttctcagtgtccaattaaaagcacca-acaaaatatcttct--acc----tgatagtgtgtcaaggggccaaaatatggctattg-cttgatgaaagtaaaagaaacagactcttatttagctgctataa-----------aggaatg--ttgttacaaatttatggaagaaaagcaat----aacaatattaaaataggtatctgctttagtactcccaaattcc----------atctcgcctgcagaa-----cagacttgcatctcatcacaaaggcaccaactcctgtttcaatattgtttgctaaaaaaaaaaaaaaaaaaaagattagacaccacttgaaaaaatccatcacctggagactggccactaa s bosTau2.chr21 31739416 1974 - 49724630 ttgcacagcgacca-tcaacaagctgctgcagaacaggacttcttagctctcaccttttcagagcaagaaaacctttcccagaattcccctggcagtctttccatcacatctctttggccagaattgtgtcccacacctttcct-aagccaatcgctgacaaagggtgtggaatcatca-tcaccatgattggcttaaactagcaaagaggcacacccctggggtgcagcagagCCCTGTTCACCTGCTACTGCACTAAACTGGTGTCTGTGGGCAGGTGAACAGGGGGTGGCTACTGGGACACAATCCCCTGGTCTGCCTCTATATTCACATTTAATTGACTCGAACCAGGTGTGGCCTGTGCCCCTCCAAGTGGCCAGGGCCCAACTCTGGGAGCAGAAGCGTGGGAGAGATAAAAGGACCAGCGACCAGCAGACACTGAGAACCATTATTGCAATGGTTCAACCATGAAATCATGAATGCAGAACAATGGCGATGATGGTTAAAGTAGACAAGAGAAGACACAGGCAAGAGAATTTTTAGCGATTAGAATCAATGAGTCTGGGCAACTCCTTGGATGTGGGGAAAAGAAAGGGCAAGAAAACCTGGAGTTCTCTAGCCAGATGCTTCTGAGGATGGT-GGAGCCATTGGTGTTGATTCAGCTGGATGTTTGTATCCCAGATAACTAAGGAGGTCACTGTGCTTGCACAAAGGACTGGACAGttttatttattttaaaaaaattattttttGGTCAAACCTCGAGTcacgtgggatttttgttccccaatcagggatcgaatccataccccctacattggaagggtggagtcttaaccactgaataaccagggaagcccCAGACTGGGTAGTCATGAAGGCCTTTTCACACCCACTGGTGTCACTTGTTCCTCACAGCCACCCAGCAAGGCAGGCAAGGTGGGACAGGTAATGCCTTTCCTATTTTACAGGTAAAGATGCTGGCACTTGTTGGCAACATAGACCTCAGGTTCCCAGGGTGACAGAGCCTAAAATTGGGACAAAATCTGAGTACCCGAACTGGGGGAGTCAGGCTAACCTGGGCTGGGATCTCCTGCACTGATGCGATCAGTCTTTGCCTAGACTGCACCTGTCTCCACGTTCCAGCTTTAAAGACTGAAATTTCTCTTATCTCTGTTGTTCATACCAGAGGTCCTTTTATTGGTCAGTTTCAAAGAAACTGACTTCCTTGTGCCATATGAAACTGCCA-TTTCTAAAGCACAATTATGGGCGGTTTTTGTT-TTTGTCTCAGAATGGGGAAGCACTTCCCAAGTATAAT------------AAACTCAGAAGCTGGGAAGGAGA------GGAGGAGGGAGGGAA---------GGGAAagccagggatggaaagtctaataaattggactctgtcaaagcaatcattgcaaaaaccaccataagcaaaatcaaaatgcaat---ctagggaaaacacagtatttgcaattcatatcacagacaaaaggctaattatcctaatggataaagagttctacaaatcaacctgg---gattaaa-aaaggacc----agcaaacaagaaagtagactaaggatataaacagatttcag-aaaagaaaatacacatgcttcttgaacctataaaaatatactaaatctcaaattaaatgtacaagataaactatttttttaaccagagagatggtttgccaaggagcaaaataattgatactatcttggagagggtaagagaaaaagg---------agctgtcataaattgtcggcagaagaatgaattataatgaattc-tggaagagaagcaatattcatcactggtataa-agctatacacaatttcaccctaaacttccacttctagaaatttctcctgcagagatacttacacatacatcaaattacaaatgtacaaagtcgtgttacagtattgtttgt-----------aagaacaaaagatggaatgcttcct--agaagtccaccaattagagactggtttttaa a score=7148 s mm7.chr9_random 283823 333 + 9745104 attactaaccatccatCTTTTCAAAAGACAAGA-------CAGGAATGATAAAGACTGATTTCCAAGCC--------TGAATAGCAAAG-GCAGAGAAGTCTTTGGAGGAAGGTGCAGTCAGTGCCAGAGAGAGCTACATATGGAGTGGAATTTGCACACAGATGGG-AGAATTTTC-TGGAAAGATAAATAAGAAACTGGTGGCACGTGTTG-CCCCGGGGAGAGAAACTGAGTAACTGAGAACAAGGCA-CAAGGGAAGATGCTTTCATATGAA-TCCTTCGCAATTCTAAAATGTTGGCACTGGATAAGTTTATTATATGTTAATATATTAGTTAGAATACAAAA------------------------TGGAAA s bosTau2.chr21 31742223 374 - 49724630 ATGAGTGACGATACATCTATGTAAAAAGAAAGAACTTTGATTGTGCTGATACAGAATAATCTCCAAGACACATTAACTGAAAAACAAGGAGCAAAACAGCATATATGGTAGAATGCCATTCATGCAAAATACAAATATGCATGTAGTGGTATTGGCACATAGATATGCAGAACTTCCCTTGAAGAATGAACAAGAAACTGATAACACAGACTGTCCCTGGGGAAGGAGACAGAGTAATTGGGAACAGGGAAGCAAGAGAAGACCATTTGCTATAAGTTCTTTTATAGGTTTACCATTT----ACCATGTTAATTTACTATCTATTAATACATTGGATATAAAACAAAACTGTggactcccctggtggtccagtggtaa a score=13539 s mm7.chr9_random 284156 359 + 9745104 TTGAACAGTAGACTGAAT--------------------------------------GGATAAAAGCTATACTTAATGT----------------TGGAAACGGATAT--tattagttttctatgctacatagtaaattatcg-caatttagcagtttgaaaagcaaacatttaccagctcgccctttccgtggggcaagagtccaggcacagctgagctgggttctgggttctgggtcttgccaggatgtaatggaggtgccggttggactgcattcttatatgga-gcttgactggggaggagtccaactctaagttcacttgggttattagcacaattcatttccatgtggctatatggcagaggaccctagtttcttgccgggtattggctggagg--ccacttgaattctggaag s bosTau2.chr21 31742841 417 - 49724630 tttaaaaataaaataaataaaACTTTTAAAAAATTGGAATAAAAAATACACTGAAAGGATAAAAACTTTGATTAGTATGTAGTGGCTTAGAGTGTAGGAACGGATATTCtactggttttctatggtatataaccagtgaccaccaatatagcagcttgaacaacaca-atttatcacctca-tggttcagtgggtcaggagtccaggcaaagcttagctgggtcttcagctcatggtctcacgaggctgcgatcaaggtgctgactgggctgccttctcatctggaggcttgactggggaagaatccaattccaagttcatactgattattagcagaatccatttctttgcagctgtatgactgggtgccctggctttttgctggctgttggcttgagggtacactaagattctagaag a score=17267 s mm7.chr9_random 288445 724 + 9745104 TACCCTATGGGTCCCCACTCCAGACTTCCACTAAGCCAATCATCTGCCCTGGCCTTGAGAAATAATGGATACCCTGAAACCAGCAGATAAGACCTCTAAGGCTCACAAGACCCCACGGTCAATCCATTCCTCCTCGTGCTAAATTCAAAAGGCAGCAGAAGCTTCCAGATGGCATGCTCTAAATGACCCTGCTTTGAGAGTGCCCTTGGTCAGTAGGTCTGAGGCAGCTGTTGCCAT----GGCTC-----------------AGTCAGAGAGTTGCCACGGTCACTGGTCACCGTTCACCGTGCAGCCCAAACCTAGGCACAGA----GTGTAGCTGTCTACTTCCTAGCTGCG-------------------TATGCCTCCCTCTACACCCCAGGAGCTGTAGGACAGGGCAACTGGACAGCAATAGGTAGGTGTATTTCATCAGCCCTGGATTTTACCTTTGACTAAACACAAGCTGAGCTCACTAAGATGCTAGATTCTAAATTTAGCAGCAAACCCTGAGAAACTGGTGCATTTGCCCCCAGCGCCTGCGGCAAGGCTGGCTGTGAGGAGCTTGCTCCACTTCAGCCTAT------GGTCTATCCTGATGTACAGGAGTCCTGCTGACTCGCCCAGTACTGCAGGCTGGCAGGGAGGC-------GCAACAGTGACCCTCCT--------CTGCTGTGCTGCTGGGAAA-------GGGGGCTGAAAAACTTCTTGGGGAGCTCACTTCTCGTGGTCTGATA-GCACCCCCAATTCAGCTCTATAACCACAC s bosTau2.chr21 31744337 743 - 49724630 TGCTCCATCAGCTCCCA-GCCTGACTTCCACTGAGTCGGTGCTCTGAGCTGACCTTGGGAATAAACTGAT-CCTTGAAACCAGTAGACAGGGTCCCTGGGACCCAACAGCCCCAGTGCTGAACCCAACCTTCCTGGTATTAAAACCATAAAACAGCAGAAGCTCCTGGATGAAAAGCT-GAACTCACCCTCACCCCAGAGGACACAG----AGTGGGCTCGAGGCAGCAGT-GCTGTATCAGGCTCCCGGACCACATGCCTAGGGTCACAGACCTGCTGTGGTGGTTGA--------------ACAGCTGAGGTCTGGGGACAGATAGGAAGTAGCCAGGCAGTGGCCAGGGACGACGGGATTGATCAGCATTCTGTGCCTCCTCCCA--------GGGCGGTGGCACCTGCCAGTCAGGCAGTGACAAGCAGGTGAGTTTCATCAGCCCTGAATTTCACCTCCGACTAAACAAAGACTGAGCTTGCTAGGAAGTCGGATTCTAAATTTAGCACCAAACTCTGGGCACCTGGTGAGCTGGCCTCTGCTGCCCGTGGCATGGGGGGCTGGGAGGGTGCTGCTCCTTTTCTCCCTCTCCGGTCGGGCTGTCCTGAGACCCAGGACTC-----------------ACCATGGGCTGCCAGAGGGGCAGATTGTGCCTCAAAGACCCTCCTCGGAAAGCCTGCTGTTCTGCTGGGGGAGGGAAGTGGGGGCAGGTAAGATCCTTCAGGAGCTCATTTC-CAAGGCCTGACAGGTACCCCTC------CTCCATAGTCCCAC a score=6120 s mm7.chr9_random 290919 448 + 9745104 TCTGTGTAAGAAAGTGGTGCTGG---CAGCTGCTCC-CTGAGCCTCCGCGCCATGGGTTATATGCAT--TTAATCTGCCTACAGGTGACAACAGTAC-CTTTGGAAGGGTGTTTTTAGGGAGGTAGCCTGCAGAGGTGCT----GGTCACATGTATGCCTTGTAGGTTCTGGCT-ACGTGGGCTACACATATGTGGCACTCCATTGGCCTGTACATGGAAG-TGTGCACACTTTGCTGCAGCAGTCCAACAGGATATGATATGTCAAAGGATACTATAGTAGAAACTTCA-------GAGAGAAAAACCTCATATCTAAAAGTATGTAATTCTTCTCTGCCA---GTTATGTGCCATAGGACCCTCTATCACTTCTTTAGACCATAAT-GTCGCATCCATAAAATCCAAAAGACTAGGCCTTGTTGGTAATCAGGAGAGTGGTCCACATGATCCCCTTGTCGCCACAGTTTC s bosTau2.chr21 31772403 429 - 49724630 TCTGGGACATAAAATGGTGGTGGAAACACCTTCTCCTCTGACCCCCAGAACCAAAAGTTGTAAGTAAAACTCATCTG-----GGCTGatagcatttctctttggtggggtaccaattgagagg-agcctgagggagcttcctggggtaccatgt------tctatgttgtgatggaggtggtgggcacatatgagaaacatcactgagatgtgcatgtaagatggagacactttactgca--------ataagctatCATCTGATAAAACATT--------GAAATTTTTCTAACGTGATGGAAgaaccaga-----aaagctatctagtgctcctctgccatcagttgagtgtc---tgacatcatgttacttctttggaccacagttaccacattcatgaagt------aggtaagccttggtagagatccgggaactggtccacttggcctccttgtc-ccctagttcc a score=28724 s mm7.chr9_random 291560 1073 + 9745104 TAGTAGACCCactatgtgctgggctctgagccaggtgctttactatgtcatctcatttCCCTTTAGTGGAAAATAGAATTGTGTAGTCACTTACCAGGGGCACTTGGGCCTGCGCTTC---AGATCGGGAATTT--TTACTCATTTTCATTTTTAACATTTTTTTTACTATATTTCTACAGAGAAATAAACTCCAGAAATT-AAAAATTGAAAACACAAAATTGTCAAAGAAACTATTTTTCTCCCTGTGGGAAGGGAGGACTTTGCTGAATTTGGGAGTCAATTGAGCATAATTCTATATAGTTCTACAGTAATGCAAAGTTAGGCAATTGCTGCACCTGCTGCATCATCCAGGGACTGTGATTGCCCCAACTGCCatgagtctgatttcagctttgattaaccaaaagcaggcttggttggaggtggggagat-agtcaggaggctattgcaatGGGAAATGGTAAAAGCTCTCCTGGACTCTGTTGCTATAGCAACAACACAGCAAAGCTATTTAGTTGTTAACTCCTGGGAGAAAAGGCAGGACAAAAATTAGTGCAAAGTTATAGTACAATTTGGACTGTGG--ATTTAACCTCTGTCT----CCCCAGTACTCCACTGTATGTACTCA--GTACT----GCATCTGTGACTGTGTC--ATCTCTTCTAGGCCAGGAACTGTACCTGAGTGTGGGAGTGTGAGGTGATGCAGGGATGATCCTCTAGAACCAAGCTTTCAAACCACAGTGAGCAGAAATCTCTTGGGGAAT---------TTTTGGG---GACTTCA--GCTTGTCTGGG---------TGGAATCTGCAGTGATG-------CCTGGACCATCCTGAAGTTGCTGGTCCATAAACTGCACTTAAGGAAATAGCATGGTACTAACAACCAAGGGCATATCAGAGCATCATCATGGA--AAGACTGGATGGCCATGTCTTGCTCCCTGCTGTAT----CCTATGACGCTGAA-CAGTGCCTGATGTGGAGCT-----GTGGAAGGA--AGAAGGATATCCACAAGCATTAT------ACATATGAAGGGAATAAATGGGTGCTAGAGCCATTCAGATGACTACCCTAGTCATGTTCATTAAGAAGTAACTGG--TGCCTGGTG s bosTau2.chr21 31773134 1093 - 49724630 TCATAGGCTCACTATGTACCAGGCTGAGCACCAAGTGCTTCACACACACCTTTCATTTTACCCCACCATGGAGTGA---TGCACAGTCACTAACAAGGAG-ATACGTGTATGAATTTGGAGAGATTGTGTATTTCTTTACTCATCTGCATTTTCTAATTTTTTATTA-------TCTATAGAAAAA-ATACTATAGAAATTTAAAAATGGAAAATGCATGATTGGCAAAGAAGCTCTTTTTCTCTCTGTGGGAAGGGGAGGCT----------------------GAGCATGATCCTGAAAGGTCCTAAATTAATGCAGAATCAGGCAGTAACTGCACCTGCCATGTCACACAGGGACTGCGATTGTCCCCAGTGCCACGTGCTTGATTTCAACTTTGATTAACAGAAAACAGTCTTGGTTGGAGGCAGAGAGAGGAGCCAGGAGGCTACTGCTGTGGGAAAAAATACTAGCGCTATTAGACCCTGTTGCCATAGCAACAGCACAGCAAAGCTATTTTGTTGTTAACTCCTGAGAGAAAAGGAAGGACCAACATTAATGT--AGTTATAGTACAATTTGGACTGTGGGTATTCAACCTCTCCCCTCCACCCCA--ACTCCTACGAGTATAGTCATCGTATTCCCAGCAGCTGTCACTATGCCCTCTCTCTTCTAGTCCAGAAATCATATACTGCCAAGTGAGGATACAG-GATTTGGGGATGATCC-CTAGAACAGtgctttcaaaccatattaagc----atcccctggggactgtgttaaaatgctgagtctgactcaaaggcgggtctgggatatgctccaagatgctgcatttctaacgagctcccagatgatgccaatgctcttggtccacggaccacactt---tgagtagcaAAACCCTGGTCAAGACGG-----TTAAACCTTTACAAAGGAGGAAACCAGAACAAGCATGCCTTGTCCCTTGCTGTCTCTTCCCTCTGGATCTAACTTGGTACCTGGTACCCAAGTAGGAAGGGGAAGGAGCAGAAGGCTCAGTACACGCTCTATGAATGAACAGATGGA-TGAAGAGATGAACATTGGATTCATTCACATTTTGATACTGACCATCTTAATTGAAAAGTAAGggactttcctggtg a score=3521 s mm7.chr9_random 295634 144 + 9745104 AAACTCAGATGATAATGATAAATGATGTTAATAAGTTTTTAATCATAAATAATAATCAGGCCTTCTGTTTGAGATGGGGTTTTGTTTCATTGATGGAAATGTT----TTATTAAGATTTTCCTCAAGCCTAATTTGATCAAACA--TCTT s bosTau2.chr21 31776079 139 - 49724630 aaactaaaaaaaaaaAAAAAAATG----------GGTTTCCATCATTAAGAATAATGCTAACTTTGGTATGAGATATATTTTTGTTTTATTAA-GGAAATATCTGCATTGTTAAGAGTTTCCCCAATTCCGATTTCATTAAATATTTTTT a score=5602 s mm7.chr9_random 295778 266 + 9745104 AAAATTAGGAGTGACAATGACTGGAATATAAGGAAACCATTTGTTAATATTGAAATCTCTTT-AACTCCTAGGATGAGCCCTACCCA-GCACGGTCCCATGTCTCCTTCAA-----------------TGCATTACTGCTC-----TTCCCTTTGCCATTTTCTG-TTAGGATTCCATGTTGTTTTTATTCCCAGGAGTGAGACTCATCTCTGTGACATTCTCATATGCATGGCTGGATTTGAGAGCTGTAACATGCTGGCTCACAGCACAATGAGCGATGTTTCTTTAGT s bosTau2.chr21 31777006 282 - 49724630 AAAAATCAGAATGATAATAAATGAAGCACAAGAAAACACTGA---AAGGTTGAATTATCTTTTAACTCTTGGAGTGAGCCCCACTTGCTTGTGGCTCTGTCTTTCTTTTAACATGCTATTAAAGGAAATGTCTTTCTTTTCATTGTTTCCATTTGCTATTATTTGATTAGGATTTTCTATTGTTCTT-----CATAAGTTAAGTTCATCTCTATTATTCTTTT-TATGCTTCTTGGGATTTGAAATCTGTATCATTCTGGTTTAAATAAAAATCTGGACTGTTTCTTTTGT a score=16166 s mm7.chr9_random 297488 377 + 9745104 ACGATCCTTCAAGAAATATTGAACCGG-GTGCATTTTAGTAGACAA---------GTACTTTCAGACTGAATCTGAATTTCTCCTAAAATTTTTAAAGAACAACTTGATTTAAGAACATTTGAAAATAACACAATGGAAATGTGTTTTTTCCTCAGGTACCCAGGCCTTAGCTCTTCCATGATCTCATGCAGGCACAAAAGCCCACCCACTCGCAAGAAGTTCAATAGAAAAGAACAGAAGAAAAAAATCTACATTTTGCACTCTACGAGATAACTGGTA--CACAATCATCATTACACTGTCAGATGTTTCTGACATTTTAAGTCAGAGTCAAAGCTAGCTACTTCCTTGGAAACTAAATAAAATGTCAATAAATTCAACTTTGGGGT s bosTau2.chr21 31782545 372 - 49724630 ATAATCTTTCCAGAAAATCTGGACTGACACAACTTTTGGTAAGTAGATTTTTGTTGCATTCTCATGTTGAATCTGAATTTCTCCTGAAATTTTTAAAGAACAACTTGATTTAAGTATACTTGGAAATAACACAATGAAAACA-----TTTTCTGAGATATCCAAACCTTAATTCCGTCATAATCACATGGAAGCAGAAAAACCCACCCACTCTCCAGAAGTTCAATGGAGAAT----------AAAGATCTACTTTTTGTACAATATAAGATGACTGAGAGGCACAACCATAATTATACTGTCAGCCATTCCTGCCATAATAATTCAAAGTT--AGCTGGCACTCCGTTTGAAAACCAAATAAAATGTCATCATATTAAACTTTGGGGT a score=4800 s mm7.chr9_random 298496 408 + 9745104 AGTTGTAGATACCAACTCCCAGAATCCCACAGTCTATAACATGGAAAATACAA-TTGGGATGAAGAAATT--CTCTCCATCTTCTCCTCTGGATTCTTCAATTGATTCTGAAGATGAAGATGCCATTGTTGTGTAAACTCCATGGTGAGCAAATCTGGTAATAAATGGGTTCTATGTTCTATGAAATGTAATAGGATACATCTTTTCCAGTTATAGGCTTCTGAGAACGTTGCTGGCATGTCTCACTACAGGGTCTCCTCTGGCTATCTGGTATACCTGGTCACTTATTCTCAATGTTTCTTATTATTGGATTTAGGATCTGCCCCTTCTTATTAAATGAAGTCTCAGCGTGTGTGTCTGTGTGCATGTGTAGTGTTAACAGATGTGCAt----gtatacctgtatggagctgtg s bosTau2.chr21 31784798 339 - 49724630 AGCTATAGAGATCAACTCTAAGAGGCCTATAGGGTATCTCATGGATAAAACAAATTGAGACCAAGAAATCACTCTTCCTTCTTCCCCCAAATCTTATTAAGTTGA--CTGCAAATAAA----CCACTATTGAATGGACTCCACAATGAACAGGTTT------------------TGTT---TAAAAGACAAT--GAGACATCTCTTCCAGGCAGAGAATT-TGAGA-CATTCTTGGCAT---TCA------GGCCTCCATTTAC-ATTTGGTACACCAGGTTAGttatt-------tttttaattaattaatttgg---ctgc-------------atcaggtcttgttgtg-----------gcacacagaatcttcactgtggtgcacagaagtgaatct-tctcgagttgtg a score=16795 s mm7.chr9_random 299106 579 + 9745104 gatccacttcatctccccaGTGTCTACCCAAGTCCTCTCTGCAGCTTCCTTGCTTTGTCTTGGTCCTCCTCCA---------ATTACCAAGAGCCTGGGTCGAACACTGCTCCTGCGTCCCTTGCTTGATTTTATGAACTGATTTTACTTGAGCATCTGAACTGATCCTGTAGAACATTTGTCA---TGGTAGCAGGTAAGTTAACAAGAGTTTCCAGAGTCTCTTCTTGAGAGTTAGGACCACCTTCAAGGTTCTCTTAAGAGGGAAGATTGTCTTCTGCCCCATTCTACC------TGCCAACACC---------CTCCCCTGAAAGTGCACTAAGTTGT--GGTTGACAATAGAGAACATTCATTTGTCAATCCTCCTACAGAAATGGGATTCAATAGAAAAGAAAGGAGTTATTTGAAAAAGAGTGGGTCCTCATTTGCATACCAGGATCCCAGGAGGCACAAATG-----------------TTTGATATGTAGGTTGGAAAAGAACAGAACTGATTCTGACTGCTGCCCC-CTCCACCTCAGTGTTACAAATACAAGACAAGAATAAGCTAAGCAG---ATAGGATCATGTGTCCTGGTAGCCTGGGACACATAAAACCATTT s bosTau2.chr21 31785315 599 - 49724630 GATCGACCTCTTCT-------GGTTAGACGGGGGTCCCTTAAAGGCTGCTTTCTTTGT----GCCTTCCCCCACCCCTTATAAATACCAGGAGCTGCAGCTAAATCTCAATTTTGATTCCAGAACTTCACTTAATGAACTGGCTTTTCTTCAGCATATGGACAGGTCTTTCAATGCATTCACCAGGATGGTGGCAGGTGACAGATCAAGACTT--------CTCTCCTTGGGAGTCACGGTCACAACAGAAGCCACTGTAAGAAGGAACACTGTCTTTTACCCCATCCCACCCCTGACTGCTGGCACCTCCACAGCCCTCCCCTGAAAGT-----AGATTGTTAGGTTGATAATAGGGAACATC----TGTCAATCCTCCTACAGAGACAGTATTCAATATGAAAAAACGATGTGATTTGGAAAAGAGTGGGTCTTCATTTGCATACCATGAGCCCTAAAGGTTCTTCTGGAGCATTCTGATCCAAATTTGATAAGTAGGTTGAGCAAGAACAGACCAGATTCTAATTTCTACCTTGCCCTACCTCAATATCGAAAACACAAGATGAGGATGAACGAAGTTGTACACTTGATCATGTAGATTGG--GCCTGGGCCACACAAATCTACTT a score=3707 s mm7.chr9_random 299688 215 + 9745104 ACACA-CTAATAGACGCTATAGTTTCCTGTCTTCCCTGGTCCCACCTC-ACATACTCAG-TGAACAGGTCCCCTGCTGCCTATCACAGAATGTCAGGCTACTGACACCACTCCTTGACTTATCAATTTGTGCCAGGGTTGACTTTCTGCTGTTGTAA--GAGACTGTCACT-TGTAAACTTGCTCCCTTCTCTCTGACCCTTTTCCCACcacacacacaca s bosTau2.chr21 31786263 219 - 49724630 ACACAGTTAACAAAGACAGCAGTCTCCTGTCTTTCCTCTtttcatctccatatttttagctgatctggtgtttacctccatattacaacgtaatagattttcaccactatttcttgattgatccgtttattgcatggttcaatctttgctatattagatgaggatgtggctgtctgaaacctctcccttcccttca--ccttcccccaacatcctgagata a score=3475 s mm7.chr9_random 299997 96 + 9745104 AAATACCAGCAACAAACTAGCACTGTATTTCTATTTCTGCCAAATACTTTTCCCATTTGAAGTGGAGAGGCTCAGTAACTCCCACTTCCGAGGCTC s bosTau2.chr21 31786647 92 - 49724630 AAATGTAAGCAACAAATTAATGCT-TATTTCCTATTCCATCAAGTCCTTTTCCCTTTCCAAGAGGAGAGGCACAGTAACCCTTGCTTGC---CTTC a score=7197 s mm7.chr9_random 300738 420 + 9745104 agccatctccccagtcc-cTACCTCTACATTCTCATCACAATAGAACTC------ATACTCTGTTCTGCAACAAAGATTAAATTGTCTTTCCTTTTCTATAGAGAGGAACTAAATGACAA-ATGCAATAAATGATGTTCCCAATGCTCATAG--CAGAGCCAAGCAGAATAGAATCGAATGGGGA--GCTACTCATCCTTTTATGCATAGTTATTTATTTTTTCTGAAGGTTATA-----ATTCTGCTTTATT-TCTATAACCAGTGTCTCAATTTCCCTCTCAC-----CCATAATATCA-TTATTCAATAAAGATCTTCTTTCCCTAG--ACTTCTTTATCAAGTTCTTAACTGGCATGAGGATGCGCTGGCTTTGTCTGTGCTGA--TGCGGGGGTGGATTCCTGGGTTTTCTGAG-TCTGGGCTCTTTTTGTTGTTGGTTCTCTC s bosTau2.chr21 31786739 436 - 49724630 AGCTATTTCCCCCTCCCTCTATATTTCTATTTTCATTTTAATACTGTTTTCTGGAGCATCCAATTTGGAAACAAAAATTAAGTTGTCTTTGCTTGTCTGTAAGATGCAACTAAATACTGACGTTCAGTAAGCAGTGTTTGT-ATGCTTGTGATTCTGGGACAATCAT-TCACTGCTGAGTGAGAATTATTGCTCACTCTTT----CACATCTATTTGCTTCTCCTGAAGTTTATGTTTATATTATGCTCTATTCTCTATTACCAGTATTTCCATTTCCCCCCCACAAGCTCCATAATATCACCTATTAAGCCA----CCCTTTTCCCCAGGAACCTCACTCGCAGA---ACAGTCTGCACACCCACCCCCTGGCTttctcttcactgcttttctgggttgatttcctaagtttcctgaaccccaggcttttgctttctttggtttactc a score=4453 s mm7.chr9_random 301811 181 + 9745104 TGGTTTCTCTTTACATACAAAAGTG---TAGCAAGGAAGTTGAGG----------TGCTTCTGCATACAGGTGGCTTTTTTAGCCTAGAGTGACAATCTGGAAACCAGTTGATGAACTAGTAGGGTAATTCCTAAGTCCCTGGGTGGGGGTGCCCTAGGGTCAAGATTCATCCAATCCCTCCAGAAAAAAAGCT s bosTau2.chr21 31789259 187 - 49724630 tgtttttccttcatgtgcaatgatgaaacagtaagaaagctgaGAGAGAGAGAGTTCTCTGTGCATTCTGGTGGCCTTGTTAGCTTAGGGTAACAAGCAGGGAACCAGCTGGTGATCTACAACTGTGACTCCTACATGCC--AGATGGGATGTTCTTGGCTAAGGG-----CCAGTTTCTTTAGAGAGAGTCCT a score=20088 s mm7.chr9_random 301995 935 + 9745104 TAGTGTATTTCTCTCTCCCCCAGGCCCAAACTCTCAGCCAGGTGCGTGTATCCTATATGGAAGCTGGAGAGCGCAGACTCAGTCACCACAAGTA--GCTGCCCCTCCCCTGCAGCCTTGCCCCGCCC-CCGCGGCCCTCTTCCTTCTCCCTCCGGATCCTGCAGAGTGTGGCTTTTGCAC-TCACCTCCAG----------CTTCAGGAGGCGGCACTCTGACAAGCAGCCATCCCTCTCCTTGCAGGCCATTTATTTGCACATTAAAAACCAGTGGCTTCCAGCGGCTGGCTTCTGTTGACAGCATAATGACTTTTATTAAAAG-GCAAAGCAGGCTCCGCTCTATTCCCTCTGTACATTATTTTCTTCTCCTTAACCCTGCTCCTCCGCCGCCGCGGCCGCACCCTCCCCTTTCCTTCTGTCTTCTCTAAGCTACACTCTGG-------------------------------------GGGTCTTCCGACATTGTTAAAAATAATAAAATCTGGGCTACTGCTGACTGTTGCTCCTGTGTACTTACTGTCATTCAGGTGACACCATTTACCAGAACAGTGGCTTCATCATAACTGCCAAAAGCACGAACTGTGTTACACGGGGAGTGTGCACCTGCCTTATGCTCTTAAAAGAGAAGAAATCTCTCCCAAGAAAGGATGGTTTCAGGGAGGGTGAATATTTAAA--TACTTTAAAGTTTCAAACCTTTCTGAGGGGTTTTGGTTTTTGGTTTTGTTGTTGTTTGGGGGTGACATTGTTTCTCTTTTGTTTGTGTGtgttttgttttgttttgctttgtttcattttggtttgcttCCTGCTGTGAG-TACTGACCATTTGCCCCT-GTGCTTGCAGGTGATTTGGGCCTGTAAGCCTTTATGCTCAGAACATGGCCACACACACCTTTACCTCAGGTTCTGGGCA-GTCTCAAACTT-GGGTATAGA-CAGGCTCTGCCATTAATCCACTG s bosTau2.chr21 31791200 880 - 49724630 TGGTGTATTTCTTTTCCCCTGAAGGACAGACTC----CTGGGTGTGTGTATACAGTCTGGGGGTGGGAAAAGGAGGA-TCAATTCCTGTAAACAAAGATGTTCACCCACTGAAGCCTCATCCTCCCCTCCACACCCCTGCTCCTCCTCT-----GCTCCCCGTGAGCACGACGTTGACACCTCAGCTCTGAAAAGAGATGATACCAGGAGGTGGCACTCTTA---ACAGCTGACCGTCTTCATGCAGATTGTCTCTGCTC-CGTGAAAAATCAAGTCTCTACTTAAAGTAGCTTCTGTTGACGGTATAATGACTTTTATCAAAAGAGAAAAATAGATTCTATTCTGCCCCCTCTCCATCTCATTTTCTTCTCTTTA-TCCTGTtcctcctcctcctcgtcc---tcctcctcATTCCCTCTTTCTTCTCTGAGCCGTAAGCTGGCCAAGAGCAACCGTTGGCACTTGCTTCATTCCCTCTCGGGCCTTCAGAGATTGTTAAAAATAATAAACTCCCAGCTA-TGCTGAGTGTGGCACTTGTGTGCTCACAATCCATCAGGTGGCATCATTTAACACGGCAACAGCTTCATCATAATTACCAAAACCAAGGATTTTATTATACATCGAGTGTGCTACTGCCATATGGTTCTGAAAGACAAGACGTTTCTCAGAAGAAAGACTAG-CTCAGGAAATGTGACTGTTTAAAATTCCCCCACAGTATTATAGCTCTTTGAAG------------------------------------------------------------------------------------------TTCCTTTGCTTCTTAACATGAGCTTCTGGCAACTTACTTCTCCTACTTCAAGATACATTTGGAATGCAATCCTTTATGTTCAGAACATTTCAACCTGCTCT----CTCCAGTCTCTGGGCAGGCCTGTGACTTGGGGTCTGGGCCATGATCTGACATTAGTTCATTG a score=13351 s mm7.chr9_random 304683 549 + 9745104 AAAAAAAGATCCTGCAACACGACCTAGCTCAGAATGCCAGGATCTCCCCAGGCTAAGGGAGGTGG----CACCCCAGCCTGGTTCTGAGTGTAGGCCCCGCCTCTTGGATGCTTGGG----------GAAGGGGGGCAGCTGCCTA-----TCCCTCGCCCTCTGC--TTCCCCAACACCCCCGCCCCTCTAGAACATTCA-CAGAAGCTCATTACAAAAGCTTTTAGCAGCACTGTTTTAAAATGTTTGGTTCTGGTGGGtgttgggtgaatacaattaaaacaaaat---ctcccagcccag-aaacctttccccaaaggtaaaggaggagagagaaaagaattttactactgagcaagcacccagctggactgtggtgca--tatcagggaacatgataagccatgacagaggc----------------------caaagcaaagcaagctcagcacattacatcccacatcctccaggtcaacagtaagcaaccctcagtgagagggtct------aacagcaggcttcctcaacatccatctt----------acatctacttgACAG----------------TGTTTGATAATTAGCTCTCTCCAAGGAGAAAATGAGCTGCT s bosTau2.chr21 31793720 616 - 49724630 AAGAAAAGACCCTCCATTATCATTTGGCCCAGAATGCCAGCTTCTCCTGAGGCTGATGTGGGAGGACCACTTCCAGGGTTGGCTCTAAGCAGACGCCTCGTCC------TCCCTGGGCAGAGTAAATGAAGGGAAAAAGCTGGATACGGTTTCCTCCTCCTTCTATAATTCCCCAGCACC----ATCCTCCAGAGCTTTTATCAAAACTTCATAATGATATCCTCCATGAGTGTGGTTTTAAAATGTTTGGTTCTGGTGGGCgttggggaaatacaattaaaaacaaatctcctcccaacccagaaaacctctccaccaaggta---gcgaagaaaggaaacaattttattattgaataagcatgaaaccagaatgtgatgcgcctctcaggcaatccactaggagatggcaaaggcagaaaggcatctcctgcttttatacagcagaaaagatacaaccaattaca-cagatgatctcaaggcaaaccattactaacccacaagtaaaaagtcttggaagaactgttgg-tcacacataattcatcttaatttaagacacattcacttggtagttgggataaccactcctgttagttaattggcttcatccaaaggaaaaatcaacttct a score=15527 s mm7.chr9_random 305996 290 + 9745104 TTTTTAAATAATCCTTTGGAAATAGAAATTATGAAATGTTTCTAAGGGAGAAAAGAGGTAAATTTTCTTGAGGGGAAGTCTCGAGGGGAAATGGAAACCACTGCTCTGGGAGATGTAAAGCCACTTTATGCAAAACGGTTTGCACATTTTTAAGTAGCTTCAAAAGTCAGCAATTGCGCAACCAACAGCAGTTGCCATGGTAGCAAAAGTTGGTGTTATTCTAATCCACTTGGCGATGATTTGGCTGGGACCGCAATTGGACGTGGGAAGCCATGTTCTTCATGTGGAgt s bosTau2.chr21 31795271 282 - 49724630 TTTTCAAATGATTCTTTTAAAAC-TAAATTATGAAATGCTTCTAAGGGGGGAAAATCTTAA--TTTCTTAAAGAAGAATCTCAAGGGGAAAGGAAAGCCAC-ACTCTTGGTGGTGTTAAGTCACTTTATGCAGAACGGTTTGCACATTTTTAAGTAACTTCGAAAGTCAGTGATGGCACAAC----AGCAGTTGCCATGGCAGCAAAAGTTAGTGTTATTCTCATTTACTTGATGATGAATCGTCTGGAGCTGCTTCTCAGTGCAGGAAGCCATGTTCTGTGTGTGGAGT a score=3779 s mm7.chr9_random 306607 189 + 9745104 TTTTGTATCATGGTTTAGGCAAAGAACAGGCACAGCACGCTGTGCAGAAATCAGGGTGTAAAATGT-GCTTATGTGCACAGGAGACCTCAGCAGTCCATGAG-----AATGCAGAGGGGCATGGAGAG--GAAG--CCTGGCCTATTCCTTCCCAGCT-GCCCTCACTAAGGACTGGGGAAAGGGAGGCATTGGGGAGGG s bosTau2.chr21 31795560 196 - 49724630 TTTTGCACCATCTGATGGGCAG-GAATAGGCTGAGCGGACAGTATGGAAGTCAGGGTGGAAACTGGAGCAGACATA-ACATGAGATCTGAGCAGCCC-TGAGTCAGAAATGAAAGAGGCCTTGGAAAGCAGAAGGCCTTGGTTTCCGTCTCTCCAACCAGCCCTTGCTAAGGACTGGACTTGGGTTGGGA-TGGGGAGAG a score=6008 s mm7.chr9_random 316609 219 + 9745104 GACTCTGTTTGTTTTCAAAGCTACAGTATTAGCAGTTTGATCTTTTTGGACATTTTCGATGTGGGAAATAAAGAGGTGATAGAAAATCTAAATTCAGCTTTATAGATCCAAGAACATCCAGAATATTT----CACCCAA--TAAAGGCATGTGAATCTACATGT--GGCTGGGAATATAATTGCAAGAATATTCGTTGAATTGGGTCTATCAGGGAAGAGAAAAAAG s bosTau2.chr21 31798057 216 - 49724630 GATTCTTTGTGCTTTCAAAGTCACAATGTTAATGG------CTTTTTGAACATTTCCATTAT----AAAATAGAGATTTTAAGAAATCTAAATTTAGCTTTATAGATGTGTGTGTTTACTGGATTCTTTTTGTACCTAAATTAAAGGCATGTGAACACATACTTCAACTTGTGAATA-AAATGCATGGACATTTGTTTTATCGAGTCTTTAGGGGACATGAACAAAG a score=14175 s mm7.chr9_random 317175 517 + 9745104 ACAGAACCACAGGGAGAAAAAAACCCAACACAAAC--AATACAGTACTCATTGTCCTCTACAGGGAGG---GTGAGGAGAG--GAAGACAAGGTCTGAAGGG-----AAACTAGGAAGACATGGTACCACGAAACTCTTC-----GATGTTTCTGTTATGTGTACGTAATATTGAAATTATTATTTTTACCATTCTAAGTTTG---AAAAGTGTCC---------TTTTGGAGGGAGGAATGGATGAATATTCAATATGTAACTTTTGAAATTGACATTCTTTTTTATGATTCAAATAGAAACTATA-TGGAAATAGTGTAACTAGAAAAATTAATTCCTAAACTTGGAAAAACAAATTATGCCTTATTAATAAAATTTGAATCTGGAACATTCACTAGCCTGGGGGATTTATTTACTTGATTTGAACGATTTGAATGGGGAGAAATT----TTAGTAACTTCACTTA-TTTTATGGGAATTAAATTCTTT-TTCTGTGTAGCTTTGTTACATATACAATGTCTGGTACAAAACCCATGACCTAGATGCAACA s bosTau2.chr21 31798983 540 - 49724630 ACAGGAACACATACATATAAA---CCAATACACACTAAATATATTA-GAATGATCTCCTGTGGGGAAGAAGGTAATGAGAGTGGAGAACGGGGATAAAAAGGGGGCAAAAGGAAAAAAAGACTATTTTATAATAATTTTCCCATTTATTTTTCCTTTATGTGTACTTCACATTTAAATTGTGCTTTTCCCCCTTCTAAATCAGGAAAAAAGCTTCCCACCCACACTATTCTAGGGAGAGA--GATGAATATTCACCATCTAACTTTTGAAATTGACATT-TATTTTGTGATTCAAGAAGAAAAGGTGGTGGGAATAA-ATAACTGGGGAATTTAATCCATAAAACTGGGAAAACAGGTT-----TTATTAATAAAATATGAACTGGGTACATTCATCAGTTAGGGGGATTTATTTAGTTGATGATCTTAATTTGGATGGGGAGAGATTTTCATTAGTAACTTTGCTCACTTTTATGGGAATTAAGTTTTTTCTTCTGTGTACTGCGGGTATGCTTTCACCACTGGATGCAAAATCTGTTGCTCAGACATGATA a score=3619 s mm7.chr9_random 317831 180 + 9745104 CTGCTGCTGCTGTTATTACATGGCCCTGGGATTTCAGCTGCATCTGAGTCTTTCA-AAACATATTCT-AGGCAAGATT---AGCAGCGT----------CAGAGCCTCCCTGGGTGTGGTAGGTCTTCCAGCTCACACTAG-TTACAGAGAGCCCTTGATCTGTCCTGCTCT-TAGGGTTTCTTGTAAGCTTACTgg s bosTau2.chr21 31799839 191 - 49724630 CTGTTTCTCTTGGTATT----GGCCCTGCGATTTCAGCAGCCTCTGTTTCTTTCCTGAGCTGGTTCTAAGACAAGATTGTGAGCAGCACCTGGGTTCAGCTGAGCCTCCT--GAAGAGGTGAGGCCTCTAGCTCAGATGGGTTTGGGGAAAGATCTTGAGCTGGCCTATGATGCAGGGCTCCCTGTGGTCTCTCTAG a score=4654 s mm7.chr9_random 557808 552 + 9745104 AACCCTAATATGTGGAGGAGATTGACATTAGTGAGAGTAAAGGAT--TCCCCTACAGCACAGAAAGGATTCATCCCTGTTTAACTGACATTTCAATCATCAATCAAATAACCTGCCAAATACCAGTTGTAGAACTAAATCAATTCTTAGAGT-TGTTCTATTTCTGACATGGCCTACACAACTGCTACAAGAG-AGCAGGCTGAGACTGAG------AACAGACCAACTG--AGTTAGGTCTTAACATGCAAGGCATACAGACATAGTGGGCATTAGGGTCAGCTCCAACAGTGGGTAGCAGGATCTCATAGGAACT-GGGGCCTG-GTACAGAGAACAGGGTCTGCTCCAAACTC--ACCTAGCAGGAAGAATGCAAAGTAGAGTGTTTTGG----CAAAATCAA------ACAC-----TTTGCAT---GAATTAGGTAACAGATAACCAAGTTTTTGGAAGGGCAGCAGGCACCAGTCTAGGACTACACTTTA--AGTTTTGGACTCTAAGGGGTAGAGATAAGGCAgg----------------------------------ttaaaggggttgctccat---------------------------ggttaagagaaagca-----------------------------ctgctccagcagaggaccaaatc s bosTau2.scaffold2096 565 640 + 138175 AACCTGTGCATGGAAGGGAAGTTGGCATTAGTATGATCAAAGAATCTTCTCCCAAAATATAATATTCATTAAACTCAGTTCAAATG----TTCA--------------------CCAACTTCCTATCATACACCTAGGCTAATCATTGCCATCTGTGTAACCTCTGGTGTGGCCTATATAATTGCTGTAGGCGTGGCAGGCTGAGGCTGCAGGTATTAATAGATAAATTGTGAACTACACTCTGACA--------ATG-AGATAGGACAGGCACTGGGGTCAGTCCCAGCTGTAACTGACAGAATAGCATGGTAGCCAGGAGCATGAGGACAGAGAACACAACACAC-CCAAACAAGGACGTGGCATCAAAGACATAAAAGGGAGTGATCTGTGTCCTGAAATGAAGCCAGCACACAGTGATGGGCATTCCAGAGCAGGCAATAAATCACCAAG----TAGAAGGGAGGCAGGCACTGGGCCAGGACACCAACTCAAGAGCTTTAGAAACCAAGGGGTGAGGATGAAGGATGGAATTAATCAAAACAAAGCACAGTCCAAGTACTTTTGATTGATTTACTGCACATGTTACCAATGCAGGAACACTGACAAGGATGGGAAAAACCAGTGTATGAAACATTCCATGATAAAGACACCTGGACCAGCACAGGAAAGGATC a score=17286 s mm7.chr9_random 558686 1230 + 9745104 TGAGTGAATGTAGCCCCA---------------AGGAGATTAACATTGAGAATTAAGTTC-ACGTTCAGACCACACAAAATTGCAAAGCTCTCTCAGTGCCTACCTAG-AAACACAGAAGCCTACCATATGACATCTAATCTTCCTGTCT--TTGTAAAAAAAAACATTGGTTTTATTTTGAGCATCAATAACTCCAGTTAAAAA--AGTATTTTCAACCTCCCTCTCAGCTATGTATGACTAAGCTGTATGTAACCCCCAGCTTTATGCAACTGAACTGTGGCCAAGTAGCTGGTTTATGCTGTAGGTATCCATGGAGAGTATGAGAGCCATGAAAGTTGGAGTG---GTTTTCCCAGACCTACTTATCTTTCCCCCATTTCTGCTGTGAAT----------------------CACTCT-AAGGTCAACGTGACCTTTAGACAAGTAGCTATGACTAGAAGCCATGAGCTAGAAATTGCATAGCACAAAGATAGAAC-----ACACAGATGGGCAGGCAGAAGTGCCATACCACCCGTGGCATGCTTT-CTCTAGATTTATAATTTTCTTTTGTTTGTTTTTTTTATGCAAGAGACCTAAAAT----ATCTGTTTTTGTTTTTATTCACAAGTAAGTTGG-TTTTCCACTATCTGCAGCTT---------TCAACTGATGTAGA-AAGTTGGGGAGCAGTGCAGGAGGACTTCAGTCTGAGTCTGCTCTGTCCTCAAGATCTAGTGCTTAGATGAACATGG--------TACCTGGAATACAGGTAG--------ACTGTTCACTGGCTGATGGCAGCACAGAGCAGAGAAGGGCAGACACCAgtcactcctgtgcttatgttattacatatagaaaatgacattttagacatctcaccccggccatgctggttctctagctgacttt------------gagaaagtagccatactctatgttacaagaagccgaaggtgttcctctggaatcctatgccaacttcatgttttcttcatccaacagtcagc--caaagt---gccctccatcctacagccacatgagaatggattctaccaacagccttcacagacttagaagtaaaatcct-gagtcttccttcagaagagaacacagcccaggtaatacctaagataaaggtttctgagagcctgaacaggagactcaga-------------------taagctac---------acctgACTTAGATCTTGTAGTCAGCCCCAGAGTCTCTGGTTATTTGTGATGCAAACTAAGACTACTAACA-AGAGAATGTGAGGTTATTCCATCTCTTTCAGATTTCCAATGGCTGTAGTATGAGTTAGC s bosTau2.scaffold2096 1612 1271 + 138175 TGGCTGAATACAGGCCCAGGAACATGTTTCCATAGGAGTTTAG----GACAGTTAGGTTCAACATTTTGTTAGGGAAAGCTTATAAGGAGCTCTCATTGACAGCAtggcaaaaacagcaacttactgcccgatagctattcttattttcttgttttgaaaaagaaccttga-tttaattggggcaacaatagctccagttaaaaactacatctttcagcctccctgtcagctctgtgcaactaaggtatatgtaagcctcagctatatg----taaggtttgtccaaagtgatggactgc----------ttcattga---------agctgctttagctggattgaacacttttcta----tttttctatttattctattttttatgttagtgatggctacaactatcaatagccatactgaacgatgaagtgaccttaagactaaaagctgtgactgaaa--catacactaagaattgcacagagcaaagagagatttggggtcccagatgaataagaggacctgccatactggtcttgacatgctttgttccagattt---atcttcctctg-------tttttatgtgagaga---aaaattaagttctaATTTTG-CTTTAGTCACTATTAACTTGGCTTTTCCATTATAAGCAACTTTCCTTAATCTCAGTGAATATAGACAGGCTAAGGACTAGGATGAacagactctacagtg-gtccttataatccccacctccttgttctcatagccacatagaattgccttccctggagtgtgggaaaagcccatcacttgcttctagttagtggaaaaatggcaaagcagaaggta------agtccctcctgt--tta---tattatgtttataagactatcttgttggcagattaactag---agtctttttccctagccaactttctttttccttgccagcaag-------actc-acctggcaaggagctgaggatggt-cgctaggatctga----------aagtggtttccacccaacagccagcaacaaagcagggtcctcagtccaacaaccaaaaggaaatgaattctgctgacaccctaagtaaccttggaagtgaattcttcccatcagcctccaaatgtggacatatccccgctaacagtttggttgaatctttctgagatcctaagcagaaaactcagacttggacccttggacactgtgagatattaacaataaacctg-------tgttgtttgaagctcctgagtttgtgg-taactgttatgcagcagtaggttgctaacacaAGGAATCTAGACTTAATCTGTAATTCTCAAATTCCTTTTGACTGTAGTTCACCTTAGC a score=14252 s mm7.chr9_random 561145 440 + 9745104 CTATCCAGAGTCCTGCAGAAGAAGTAGCCAAGAG-----CCTGCTCTACTTACAAATTGAGCTGTGCTAGTGCAGTACTGACTGGCCAAAGGTGGATATTTCATGCTAGTGCACC------------TTTTTAAGAAGGAAGAAGCAGACAAGAAATATTCCAGATTCGTATCCATGCAAAGAGATTATGAAAATTAAGTAAACACTGAGATTCTCAGACAAAAGGGTGCCACAGGACTG-AAAACACAATTATTCATTTACATACTTGCAAGATTTCAGGCTCCAGGTAAAGGAAAACCTTGTAAGCACTTATGAAATTCAATCTATAACCCTT-GAAAAAATAAACACCTCTCATATGAAAAATGACAC----GGCATGTTCTTTGGTGTCCTAAATAAGAATCGCACCATTTGACAG--------TAGCATGCCTTTCCAGGGTTGTACTGAAAAG-----GAAGGTGACCTA s bosTau2.scaffold2096 3087 461 + 138175 CCATTCAGGTTCCTTGAGAAAAA-CAGCTGAGTGAGACTCTCTCTTTATTTGCACAGTGTACCATGCAAATGCATTACTGA---ACAAAAGAGGGGTTTTTTTAATTCATGCACTACTTGtattttttttttaaaaagtagaaaata------aaatattaCTGATTCGCATCTCTCCAAAGATAGGATGAACATTAAGTAAACATTGAGATTCTCAGACAAAAAGGTGCCACAGAACTGCAAAACATTGTTATTAATTAACATAGCTGTAAAATTTCAGGTTCCAAGGAGAGAAAAATCTTGGAAACAATTATGAAAGTCATTGTATAACATTTAGATTAAATAAACATTCCTCTTAAGAAAAATAAAACATTAAATATATCCTTTGATTTTTCGAATATGAGTAATCCAATTTGCTAGCCCTCACCTAACA--CATTTCAATG---GTACTGAAAAAATTTTGCAGATGACTTA a score=20751 s mm7.chr9_random 561636 705 + 9745104 ATGGGAGTCCACAGCTCTGGCCT-----------GAGCAAGCACCAGCCAGAAGGTTGATTT---CAAAATGTCTAAT----TGATTGCTAATCATTTTTAAGTTCATGACCCTGG---TTTACTGTAAACAAAAACCTAACTTGTTTAAAACAGATGAACCCTTCAACTCACAAGATAAATTAGTATT---------------------------AAAAAGACATGTTGCCTAAAATGGAAATGTGCTAAAAATATTTTCATTTTACGTTGGTATAATCTGTTTAGTGCATTATACAGATTTTGTTTTTCTTTCTCCTAGAATAGCAAAACAAGACAGTCTAAGAACAAAACATGGACAAGTA---CTTACAAGACAATTGACAAAAGAA-----GAGTCCATTATTTCAGAAGTTTTAAAACAAATCCAACCATT-CTGTCAGTGACTCCAAGTTGCCa-ttaaaatatttatatattta-------GAGTATATATTTAGAGCTCTTTCTGGACTTAAGC-------TTTGCTTTTCAGTTTCTATTTTCATGCTGACATGTGAAAGAGATCAATTTTCA-------AAGTTCTACTTTCCCAAAGTAGACTTTTACTCCATATCTGAGGTATCATCAAAATAACTAG-ACATAACTAACCCCATTTTCTAATTTTCAGAGGAAATATGA-CATTGAAAT--CTCATTTCTTTATCATTATGAATTTCAGTACCTATTTCACATGTTGAAACTGATGTTGAAAACAATATATCA--TTGGGGGTAGA s bosTau2.scaffold2096 10030 783 + 138175 ATGAAAGCCCATAGCTCTTATCTCTAGGTCTACTGAGCTAATGCTAATCAGAATTCTGCTTTATTTATTTTTTTTAATGTTCTGGCAGCTAACAATTTTTAAATTTTTGATTCAGTATTTCTACTTAGATTGGAAACCTTACCAGGTTAAAATGAGTGTACCCTACAGTTTATAAGATAAATTAGCCTTGGAAAGATTGCTTTGGTAAATTGCCTTAGAAAGATATGTTGCCTAAAATGGAGAAATGCTAAACAGGTTTACCCTGTACGCTTGTATAATCTATTAGGTGCATTGTACAGAATGATGTTTTCTTTCTCTTAGGACAGAAAAAGAA-ACATCTTGAATGCAAGGCAGTTATAAATAGATTTTGCAAGACATTAGTGAAAAAAATAAATGAGTTAATTATTTCAGATGTTTCTGGACAAGCCCAACTATTCCTTTCAGTGGTTCCAAGTTACTACTTGAAATATATGCCTATTTATCAACTTGGatttaattttaaatttaattttaaatCCAAGTTGATACATTTCCTTTTAAGCTTCTATTTTTATACAAATATATGAAAAATGTAAATGCTCAAACAAAGAAGCATTGTTTTCTTAAAATGGATGTTTCCAACATATTTAAGGTATCAGAAAGATAAATAGTTCTTGACTAA----ATTTTCTTATTTTAAGAGGCAATATGACCATTCAAGTCACTAACTTTTCAATCACTATGAAGTGCAATAACGATTTCACA--TTGTAACTTATTTTGAAGAGAATATACTAGCTTGGAGGAAAA a score=35118 s mm7.chr9_random 675563 943 + 9745104 TCCAGAGGGCTTTCTTGATGTCCCTGTTCCTCAGGCTGTAAATGAAGGGGTTCATCATAGGAACCACCATTGTATACATTACTGAAGCGACCATACTTTCCCTGGAAGAACTAGAAACTGTGGAACTGAGGTAAACTCCTATACCTGTTCCATAAAATAGGCAAACAACTGACAGGTGAGATCCACAGGTAGAGAAGGCTTTATATTTCCCTAACAGTGATGGAACTCTAAAAATAGAAGAAGTAATTTTATAGTAGGAGTAAAATATTCCTGAGGCAGGGAGGAAACCAAGAATGATGCCTAAAAGAAATATGACTATGTCACTGATAGTAGTGTTAGAACAAGCAAGTTTTACAAGTTCTGGAACATCACAAAAGAAATGAGGGATTTCTACGTTAATACAAAATGTCAGTTGTGATACCAATAAGCAGTGTACCTGTGAACTCACAAGACTAATGAAAAGGGAAACTATGACCAAACATCTACAGAGGCAAGGGCTTAGAATGACTTGGTAGTATAGAGGGTGACAAATAGCTACCCATCGGTCATAGGCCATCACAGCCAGCAATAGGCTATCCATACCCCCAAAAAGAAAAAAGAAAGATACCTGAGTTAGGCATTCAGCATAAGTTATGGATCTGTTATGGGCATGCAAGTTTATCAGCATTTTGGGGATGGTGGTGCTGCTGAAGCCCATGTCAGACAATGAAAGGTTGTAGAGGAAGAAGTACATTGGACTGTGGAGGTGGGAATCAGAGCTGATGGCCAAGATGATGAGAACATTTCCAAGCACAGTGAGCATGTATATGAGCAGGAATAGTGCAAATAAGATGAGCTGCAGTTCAGGGTCCTCTGAGAGTCCAAGGAGAATGAATTCCAAGGTTCCTGTTAAATTATATGGTTCCATAAGGCTAGGACATCTTTTGAAAAGAAAAAATAAAAG s bosTau2.chr2 86492897 941 + 86543008 TTCTGAAGGCTCCCTTCACATCCTTGTTCCTCAGGCTGTAGATGAAGGGGTTCAACATGGGGGTCACCACGCTGTACATCACGGAGGCCACTGAGACTTTCTGGGGGGAGTGAGTCACTGCAGAAGTGAAATGGACCCCCACACCTGTCCCGTAAAATAAAGAAACAACTGAGAGGTGAGACCCACAGGTGGAAAATGCTTTTTGCTTTCCCCCAGATGAGGACATCTTCCTTATGGATGAAGCAATTCGTGAGTAGGAGAAAAGAATCCCAACGAGGGGGAAAACACCCAGAACACCAGTCATAAAATATATCAAAGTCCAGTTCAGGAAGGTATCAGAGCAGGCCAATTCAAGAATATGTGTCAGTTCACAGAAGAAATGTGGAATTTCAAGATCTCTACAGAAGGTCAGGTGCTTCATCAGACAAATGTGAAGGAGGGATGTCAGGACACCAATGAGCCAGGTAATAAAAACCAGCCAACCACAGAGGTGTGGGTTCATGATGACCGTGTAGTGCAGGGGGTGACAGATGGCCACAAATCGGTCATAGGCCATGGAAGTCAGGAGCAGAGTGTCCAGGATAGGAAAAAGCATGGAAAAATACACCTGAGTGAGGCAGTCCATGTAGGAGATGGCTTTGTTCTCTGTATGGATGCTCAGTAGCATCTTGGGGACTATGCTGGTGCTGAAACAGATGTCAACCAAGGACAGGTTTGAGAGGAAGAAGTACATGGGGGTGTGGAGGTGGGAGTCAAAAATGATGGCCAAGATGATGAGCAGGTTGCCAAGCACAGTGACCAAGTACATGGACAGGAACAGCCCAAATATGAGGGGCTGCAGTTCTGGGTCCTCAGAGAACCCAAGGAGAATAAACTCTGAAACTCCTGTTCTGTTTCCTGCTTCCATGTAGCTGATATATCTAT--GAAGGAAGAGACAAGAG a score=2638 s mm7.chr9_random 737339 84 + 9745104 CAATTCTGAAGCTGTCTTGAGCATGCAGGAGAGATGGTGGCAGTATGCCTGTGC---CAC---TTAGACAAACTAAATATAGTCTTCAGC s bosTau2.scaffold4076 43794 90 + 70893 CAGCTTAGAAGCTTTCTCAGATATTCAGGAGAGAGAACGGCAACACATGTGTGCACGCACGTTTTACATAAACTCAGTTTGGTCCCCAGC a score=19509 s mm7.chr9_random 737661 1221 + 9745104 GGACCATCCTAGGGAGGATGATTCAGAAGGACAGAGCAGGTAATGGTAGCAATGGGTGATCTATTGGTTTGGGCTTCCTGCCTTAAGCATTCTATTAAGTAGGGTTCTAATTACTTC-GGTGTAATTACAGGCTTTTACCCTTTCTCTGACTTCATTAGCAAGAGTTAGAGTGAAG----GAGAGGGATTTAAGGTTTCAATCCTTCTGAGCACTAATTACTCACCTTTGCTTTGTTACTAAGTATGGCTCCATTACCATCCCAAATGACTCAGTATAGAGACTAGTCAAAAGCCACTTGGTCCCTCATCCCACCCTGCCTGCCACACCATGGGCAAGCAGGGAAAGAAGAAAGGGTTG----TTCACGTAGCTCAGTGTCCAGTCCATAACATTCTAAAAGGG-AAGGGCAGGCAACAGCTTTTCAACCA---------------------CTGCCTTTGGCAGGTTGTAGCTTGTTTACGGCAAGGCTAGCAATCAAGCATTGGCAGTCTGTAG------------AGCTGGACTCTATAGACTTTGCAGTTTTAAAATGAAAGATGTTAA-CCCAACTTTGAGG----TAGACAGAGTGTCCTTATTGTTACCAGTTAA-------------------------------AAGTCACAT-ACTAACTAAGAGTCAAACTA-------AATACAACCATT-----------TGGCAGCTGCTGCTAT-AAAGGGCCTGTGGGTACTAATGGGCTTAGTTCTCAAGATGGCCAT-TAAAGCACTGCTATATGCTCACACACAGGTGAGAACTGATGCGTGGAGAGCCTG-tagtttgctaaggctgaccatctagcaaagaactacagacctgaagcttaaagcaagagcaattactcttatggagctctagagggcagaagtttgaaaccaaagggt-tggcagggccatgtttcct-cagaggatcttgggcca--ctctgaatcttgtccc---tccagcttctggtggCATCTCTGTTCCTCTGCTTTTTTCCCTGAGAACTGATTTACTCTtctttttctttagatggccctctcct--------------------cttctctcacaaagacccgtgttaatggatatgggactcgtctggctcactcagggt---ctcttcatcttgagatcattcacttcaaacgat------aaaggcttttgctagttggagtcatgctcacaggACATGGG------------CAAAAGTTGTGAA---GGCTATCATTTAGCCCATGACAGAA-----AGCtgacttactgagactttcacagccagtaag---ggaatctgggatctgaatctagacaatcgagttatagcatccat s bosTau2.scaffold4076 43906 1269 + 70893 GGACCAGCCCAGCAGGAATGATTT------------CAAGTGACAGGCGTGATGGGTAGTCTGCTCGCTTGGGCTTCCTGTCTCCGGCTTTCTATTAAGCAATGTTCTAATTACTTCCAGTGTAATTACAGGCTTTTACCCTTTCTCTGACTTCATTAGTAAGGGATGGAGAGATGTTCAGAGAAGGATTTAACG----ACTGCCTGTG------TATTCTGCACCTTTGC-----------------CTCC--------------TGGCCCAG----------------AGGCCATCT----CCTCACCCCAACCTGAGGGATACCACAT-GGCGATCTGGAGAAAGAGGAAGAGCTGCATCTCCAAGCAGCT-GCTGCCCAGGGGAGGGCCCTGGGTCAGGTCAAGGGCACAAGGCAGCTTGtcaaccatcctcgccttttcaaccatcctcgcctttGGCAGGGGGTGACTCATTGTCAGTGAGGCTGGCAACTTGGTACTAGTAGTCTACAGGAAGAGGAGGATGGGAGAAATCCCTGGACT-----ACTTTTAAGTGAACGATGCAGATTCCAACTTTCAGGTTATTAGACCaagtatttttattg---ccagttaacaggtgaagagacagaagctcagagataattaagtcacACAACTGTCAAAGAATAATACTACTACTGCAGGAAgagcacttactttaagtgtgccagctactgctctgaaatgacttaagtgtactga-----ttaattctcataacagccctataaagtattacgtccattttgcagataag---aaaatgaagtataaagagtgtattggtttcctagggctg---ctataacaaattaccacaaattgacattaaaaaatagaaccatcttctctcatgg---tttcaagggcag-agtttgaaatcaagctgtctgtgggggccatgctccctccaggggctctgaaggtgatttctatttcttgtctctgttccagagtctggtgcctgccgcgctcccctggcctgt--------ggctgcatcactccacctccttctt--gtggccttctcctgtctgtgtccctcctctgtggttcctttgtacagacacttgtcattggacttat--cccacatggataacccaggatgacctctgcatcttgctaacccttacttaactagatctgcagagactctttgtccaaataaggtcacattcacagactgcggggttgaggatgcacacatattttgggggtggccaccattcagcccaCTatagagaggttaggtgacttgctcaaggttccacagccaggaagtaaagaagatgagatttgaatccagtcagtacagccagag--tccat a score=8246 s mm7.chr9_random 738923 401 + 9745104 AAGAACTGCA-AGGAAGCTGTAGATGCAAGCccaggtgtggggccttaagaag-----cttcatcagctgtaccccagtttcctaatctgtgaactcatgataatattatctatcacacaTATTTCT---CAAATGCATAATGAGCATTTACAAGATTCCACAACCAGACA---ACAGGTGCTTTGAAAATGATT-----TCTTGCCTTCTATCCCATCCAGTCAGTCCCTAATTAGAGATAATTACAGTCCTCTATTTATTGACTTAGACTGGGGTCC------------------AGAGGTAGAAAGGATGTGTGTGAGGCATTGAAGACACCTCAATCAATTGAAGATTGATTA-----GGGTCTCATGATCAGATTATAGGTGGGCTGGGGAGTGGGAGG-----------TGATGGAGGGCTTCCAG---GTT-TCCTTTCTCCGGCATCT s bosTau2.scaffold4076 45795 437 + 70893 aagaaTCACACATGAGGCTCCAAATGCTGAGCCCAGTATAGGAC---AAGCAGGGtgacctcctcaa----gcctcagtttcctcttctgtgaaatggtgaaaatactatccactccactggtttattatCATGTGCATAATGAGTACCAATAAAATTACAGCATCAGTCACATGGAGATGCTTAGGAAATGCTCCTTCCTCTTCTTTTCTCTCCCATCTAATCAATTTCCACAAAAAGATGATTATAGTC----ATTGACTGGCTTGGACTGGGGTCCTGGAAGTAGACTGGAAAAAGAAGTAGAGAGTA-------AAGATATTTAAGACA-CTGAGTTGATCTCAGTGTGAATAACAATGGGCATTGGGAAAGCATAATGGGTGGGCTGTGGGGCAGAGGGAATGAGTGGCACAAGGGAAGGCTCCCAGTGTGTTGTTCTTCCTACTCCATCT a score=18385 s mm7.chr9_random 790567 948 + 9745104 CAACGAGCCTCTATTAACCAGCAACTCTGAAGCAGATTCCT---GTCCGAAAGTCAGAGA--ATAGCCAACTGCACACC-------------AATTAATCCTAGACAGCCCTGAGTCCATCATCTGCTCCTCCAGGCTGTCTGCCCCATTGCAGTCTGGGAAACCAAGGAATGTCGGTAGCGTAAGGTAACTGATTAGTACAGCCCCTATCAACCATCTTTGGCAGTCGCAGCT--GCCACTGGAGCGCTGTGG---CATGTGCTTACATCTGGAGCTGGAAGGCCATTTGTCTTTCATTCCACACACTTGAAAGGAGCAGGTTCTGGAGCCAACAGAAGAAGGACCGGCCAGGTCCCCTGTGA-GAGGACAAAGCAGACTTTTGCCTGCGAGGTAAGGAGGCCTAATGTGCAATCCATACAGAGG---------CAGGAAACT---TGCTCC---ACCTTTGGATACT------------GGGATCAGAGT-----GAGATTGAAAAAGAGAAGCAGGCTGCTGCTGTGGTAGGTT-CCAGTAAGTGGTCCTGCCTG-ACCTCTGACAGGCTAGGGGATC--------------------TCTAACT-------CTTCATCAGAAGGAAGAATGGTTGCTTTAGTG--------------GATCCCTTGATTGGG-------AATTTTTTTAAGTGTGGT--------AAGATGCCATA----Gaaatgtaccatcatcaatcaacacttagtacattcacaatgtggggtgactttcactacactttagacccagagca-tgtcattagccct---agatgttacatatttattaaggagtcactcctcattttgcaccccactcaa-----gacaacaaccag-ctggcctctgtcttagtc-----agctgtgcctgtactgggtgtctc-taccgatcggatc--gcaa-tgtgtggccttttgaatctgactcctttgccttggaacaacatcgttgaaattattctataccatagccggaattggtatttctttcgtttgtatgactgaatatataatatctcattgt-----TATAGTACTT s bosTau2.chr1 58127073 1059 + 102834029 caatgaatctttattaagcacctactgtgggatagacgcatatggtccaacagccagagagaagagccaaccaCACAAATGCGTATGGCTGGAATAAATCCAACCCAACCCTGGGAGCATCAACAGTTCCTCCAGACTCTCTGCCCAGCTGGAGTTTGGGAAGCTAAGCAATGTCTGTAATGTAAGGAATCTGATGCACCCAGCCCTTATCAACCCTGTCCGAAGAATGCAGCTTAGC-----GAGCCCCTTAGGAAGATTTACTCAAGTATGAAGTTAGAAGTGGGTTTGTCTTTCA-TCAACACACTTGAAGGCAATAGGCACTGGTGACAGCAGAAGAAAGGCTGGCCCAG----CTGTACTGGGGGTAAAGTGGACCTCTGCCTGGGAAGCAGGGGGCCTGGCTGCAAAAACTATGATGTGATGCATGGCTCAGGACATTGCATGTCCCTGAATCTTAGCATTTTTGGTAGGGGTTGGGGGTAAGGGCCCAAGGATGTTGAAGAAGAGAGGCAG---CCTGCTATggcaggctgggggtcactagacttggctgtacctctaacaggctgggtgacctcaccaggccatttcccctttctgacctcagctaccttatcagtaaaaataatagtaataataGTGAGATGATTGTTCTAGGTCTGTTGATTGGGTTTTGTTTTTTTTTTTCATTGCTGTATTTTgtgaaattctcataacataaagcttgtcatt----attgacatttagcatatttacaatgttgtgtgaccatcaccactatcaagttccaggacattttcatcatccccaaaagaaatcctgcactcattaagcagtcactccccattaccccatccccctaatctccggcaaccactaatctgctttccgtctctgtctctatggatttgccaattctgaatatttcatataaatggaatcatgcaattatttgtccttttgtgactgacttctttcacttagcatgatgttttcaaggttcattcat----------gtatcaacacttcattcttttgtatagttaa----gtagtatttcattgtagagatatactattt a score=3431 s mm7.chr9_random 792507 137 + 9745104 TAGCCCTGCAATCTTTTTCTTCTAATGAGATCTTTCTCAGAAATCCACTATCGTGAAACATAAAAAACAAAACAAACAAAAACT-CTGCTCTCCTGGAGGTGACAGAATTTTTGAGAAGTGCTCTGGGACAAAATAAA s bosTau2.chr1 58128443 126 + 102834029 TAGCAGTAAAATCTTTT-CTTCTAACACAATCTTTCTTGGAAACCTACAATGAT---------AAAACAGATCAAAGAGAAACTGCTGGGGT--TGGAGGTGATAGCACATCTGAGGAACCCCTTAGGGTTGAAGAAA a score=27674 s mm7.chr9_random 793013 1111 + 9745104 GGTTGCCATCCAAAGAAAACAGCAGAAAACTGACCCCGCACATGGGGAACTGGACCCTTCTCAGGGAGAACTCCGCAATTT------ACATCTTTTACATCCTTCCCAGATGGCATGGATGCCCTAAAATTTGAGAGACACTCGACTGGGAAAGGCTGAGAGGTGAGGGGGTGGAGAGCATATGAATGTGACTGGTGCAGGCCACAGAGCCACTCTCTTCCCGGGACACTG-GAGCCCCCCT-CTGCCCACTTCATACTCTGAAGGAG----------------TCGAGATCCAA-TGCCAACTAAGGCTAACTCAAGGTCATCTTGGCACCACCCCCTGTCTACAAAACTGTGTGTAGACTAATCTGCAAG-GACAAGCAACCCCTTGTGCCCCCTCAGGAACTGTACACACTGTTTAGACATCTCCAAAGGGCTCCCAGTGTTTAAATGGCGCTTATTATGGTCATTTTTCCCCCTGAAATTAGAAAAATTCAAAAATAGTAAATCTGTCACAAGCAGGCAATGACTGTTTCTGTGAGTTCAACCACCAAGCAGCAAAGCCTCCTTTGTGCTGAGAATCAACATTATTTTACTTTGGGACTCTTGCCCGGATTTCTGTTAATTCGTTCACACACGCTTTCTCCTCCCAGTCTTGTGACTCCATGCAGTCTT-CTCAGCTGGGTCAGGAAACAAGGAGAAATGTCAGAGGTTGACCCAGCAGCCTCTTATGTGCACTGGCCTCGCCCGTA-CGTTGAAAGGTTCCCTACTTCA--AACACTTCCCAGGGCAGGAACCCCCTTTTCAGGATCTGCTGGGGTTCACCCAAGGAAGTACAACTAC---CCTGTTGTAATTG--------TGTATAAAAATTCCTGCCGAAAC-------CTTGTC-----TGCCATTTTATT----GTTCTTT-------------TTGCTGGCAGCTCGTCTGCGCAGGCTGA-----Gagatgtcagtaggggctgcag-cacctgggg----acttgacct--agactggga--cctccagtgtggctc-ttcagacggctgctaattgctgatggttgtcagcTCAGATGTGGACAGTGCAGAGGC-----------ATGTCTACCCCTGGCCTCCTGTGTGTG---TGGACCACCCACAGTGCAGTGGCCGGGACTGGAAAGGTAGAATTCTCATAGCAAGAGGTCC s bosTau2.chr1 58128904 1145 + 102834029 GGTTCTCTTTAaaataaaaattctgggatcccaccccagacttagagaatgggaatcttc--agggaagaatcctggatttttttatacatcttttacgtacttcccagatgatttttatgcccccagatttgagaaccactgAACTGGAAGGGACTGAGAAGTGAGGGTTAAGAGACTAAATACCTA-AATTGGTAAAGGCCACCA--------TCTTATTGAACTTCTGTGAGCTTCTCTTCTGCTC---------TTTGAAAAGAAATGTTGGATTTTGCTTTGGGATCTGAGTGCCAACTGGGGCTTTCCAAAGGTCAAACTGGCACAACCTCCAGCCTACAGGACTGGG--------AAGCTCCAAAAGATAAGGATACTCTTGTGACC--TCAGGAACTGCACACAATGTCCCAGCATTTCCAA-GTGCTGCT--TTTTAAAATGATGCTTATTATGGTTACTTTTT----TAAAATTTGAAAAT-------ATAGCAAATCAGTCATAAA---GCAATGACTGTTTATGTGAGTTTTTGTAGCATTAAGCAATGTCTTCTTTGTGTTGAGAATCAACATTATTT-ACTTTGGGAATCTTGCCCAGATTTCTGTCAACTTATTTATACACAGTTTCTCTTCCCAGACTTGTGACTCAATGAAGTTTTCCCCATCTGGGGCAGGGAGCGAGCAAAACTGTCATATGCAGAT---GCAGCCTA----GTACACTGAACTTGTAAGAATCGTCAAAGACCCCCCTACTCTAGTGATAC-CCCCAGAGCAGTAACCCCCTCTTCAGACTCTTCTGGGATTCATCCAAGAATGAGTAGCTCCCCACCtgttttggttagtcactcttacataaaaaatcttgccaaaactcagtgacttgacacaaaaactatttcattattagttctctccagtctttggagtcgctg--agctcaacttagcagttctactactgtgatgttggttggggctatggccacctggggtgtcaagtgggctgaagagtgagaagaatccaagctggctcactcacatggctgggagctgatgctggctgacagc-----tgggagctcagctgaggctgttggctgaaatgtcagcacatagcctctt-catgtggcttgggcttcccacagtatggcagctggg-ttagggagggaatatcctacgagcaagTGTTCC a score=19319 s mm7.chr9_random 796870 1189 + 9745104 ctttgcatttcttatcaaagccagtctgtgtggccaatagaatgtaccagaaaaatgcatttagatgcatggtatgctccttccaagattagactatgaaatactt------tcagtcttagtcacggttacagaccatctcatgctgtgaacagtttcatggagaagctcatagagggtgaccaactagtcttgatcttact-aggaccatcctgcttttatcatagaaactctcacatcctgagaagcccc--agtcctggaccaacacagatggttggtcaccttac--------ccctgtggtatggaacagaagcatccagacaagcctgggtggaaga---ggcctccagccaacagccccact-ggaagccatctcagaagtgagttctccag-cccagctgagacttggattgattgagtcccta---------ctgactctggtcccataggaaacccccaagctggaccactcacctaagctgaccgtcagaaactagg--agacagtgaatatctgttgttggtttttttttttaatggcactaaatttggggctaatttgttacataataatagacatcttatGTAGATAGATTGGTCTCCC---ATCAGATAATA--GAGAGGGCATAGTGGGTTGTTCTCACTCTGTCTGGAGCAGCTAAGATAATCATCT-GTTTAAAGCATTCCTTTCCAACCGGAGG--------GAGGAAGCGTGGTTTCTCATGTTCCTGGAAGGGCAGAACTGGGCGGGCCTCCCTAGCTGCAGCAAGAGAAGCTTGCTCCAC-TGTAATTGTTTTCTAAGTTTCCACCAT-AATCCCCAAGGGTCACGAGGCCCATGAGACCCTC---TCCCG---GCTCCATGCA-----CCTAATTTCCCTCAAGGCCTGAGGTGCCTACCTGGGTTGCTTAAACA---------GCTAGTAAGGATCTCTCCAGTACAGCAGAAGGGACTCTGTGTACCGAATAAGGCTCACAACAACACGGTGC-----CTACAAGTCAGGCAGATGTTTTGTTTATGAGAGTCT------------CTCAAAA--TCTTCCAG-TAGTAACCCCCGGTATCTGAAACTTCACCATCATAGTGTGACGTATTCACT--------------------CAGCAC------CCAAAAGACATGCTTGAAATTAGACGGTTCTCCCGGGCCAGTGTGGCATGAGGGCAGTCAGAAGTAACCCAGGGGGAGCACAGACGGCAGGCAGGACCCCTGCAAAGCTGAC--TGGTACCACGTCATCACGT s bosTau2.chr1 58133709 1223 + 102834029 ctttgcacacggtaccaaggctggtctgtctgaccagtagactagaccagaagt---------gatgcacagtatgttacttgtaagattagatgataaaatgcttcatagctctatcttggccac---------tctcttCATATTTTGAGCAGC--------------CCTTGTGAGAgaccaacttgtccccaggttgcccaggactttcctggttttagaat-gaatgtctcacatcctgagaacccccttagtcctgggcaaaccaagatgattggtcatcctaTGTGACCAGCTGTgtggtaaggtagtgagacttcaggacaacagtgaacaaaaaataagccctcttacaaacagccacatgagggagccatttggaaagcaaatcccccaggcccagtcaaggcttgggaagactgcagccccagccaactgcccaactgcaacctcatgaaagaccctgatccagagccacccaggtaaggcgacccttagaaattatgtgagacaataaatat------------tgttattttaa-gctgctcaatgtggag-tagtttgttaaacagcaata---------TGCAGGTGGTCTGTTGCCCCCTAATCAGGGAACACTAACAGATCAT--------GATCTCCACCTATTTTAAACAGCTATGATGGTCTTTTTGTTTGGAG-ATCTTTTTCTTTCCTGAAAATGAACCTGAGGGAATGCTGCTTCTAGAGTTCCTGAAAAA-CAGTGTCCCACAGGG-TCCCTGGTTGCTGCAGCTTGAGCTCATTCCACCTCTAATTATTTTCCAAGCCTTAACAATGAATCTCTTGGGCTCACAAAGCCCTCCTGCCTCTCCATTTCTAAATGCTCTCTGAGGCTGTCCTGATTTCCCTGAAGGTCTGAGGCATTTACCTAGGCTGCTTAAATCACCTTCTGTGCTGGAAAGTATCCCTTGATCTCTGAACATGGATATCTGTATGCAGAGAGCAGTGC------ACATGGTGCCTGGACTGTAGGGCATGCAGATATTCTG----GGGGAGCCTGAGGGGTCTTAACCTAAAATCTCTTCCAACCAGGCACCAAGGTTATCGGAGAGTTCATCTCTCAGGTGTGATTAATTCATTTGAGAGGACAAATTATCCACCAGCACCTTCTTCTGAATGAGTTTACTGAAGACATTCTGCTCTAC----CCAAGGCAGCATAAGAGTAGTGGGCACTTGATCCAGCGGAGCACAAAAGACACGTGAGATCTCG--AAAGTTGACCTTGGTCCAACCTTCTAATGT a score=6425 s mm7.chr9_random 798189 161 + 9745104 ATCCACCCCAAAACAAGGGCTGGAGCCTAAATTCCAAATAGCAGAGATGGTGATTTCTAGCCTTG-CTGAGAGAGCAC--CCAT-TTTGAATCTTCACTGTTTTGTGCATA-GCCATAATCTTTACTTGTTTGTCCTGGCTCTAAATAAAATAGTTTAACATTGTA s bosTau2.scaffold6881 11965 166 + 42332 ATCCATCCAAAAACAAGGACTGCAGCCTAAATTCCAAATACCAGACACTGAAGTCTTCAGTCTTGCCTAAGGGAACACCTCCATCTTTGAACCTTTACTGTGTTTTGTACAGGGCATTCTCTGTACTAGTTTGTTGTGGTTATAAAGCAATTAGCAAAACATCTTA a score=12999 s mm7.chr9_random 798453 201 + 9745104 CCCCTCCC---------CAGGGATCCAGGAATGTGCCAAGAGTCCCACTGGCCTCTGCTAGGTGGGCCTGGATATAAGATCCGTGTGCAGTAAGGGAGGGATGTCTTCCATTTTTTGCTGCCTCCTTCCCATCCATTGTCTGAGG-AGGGGGAGAAGGTATTTTTGAGACAAAGCACAGGCACCATAAAT-AAAGTTGTGACACTACTACTC s bosTau2.scaffold5573 17300 211 - 52870 CCCCTCCCGCCCCAGAACAGGGATCCGAGAATGTGCCAAGAGCCCCGCCGGCCTCGGCCAGGCGGGCCTGTATATAGGGTCCGCGTGCAAT-AGGGAGGGATGTCTTCTATTTTTTGCGGCCCCCTCCCCGCCCACCGTCCGGGGCAGGGGGAGAAGGTATTTTCGAGACAAAGCACAGGCACCACAAATAAAAGTCGTGAAGTTGCCACTC a score=11506 s mm7.chr9_random 803703 320 + 9745104 AGGCTAAAATTCTTGACAGGATTTACGAATCCTTCACCTGGTCCCTTTGTGATCA-AGGATTTATAATCTCT-CAAAACTGGTAAGCATCCTGGGATGGTCTTAATTTTTCTGGCTGTCAAAGCTATTTAAGATTGATGAGATCTG-GCTAAACTGCTTAAAGGTGATTATCTCA----GCCTGAATGGCATGTGAATTCCAAGGGAGTTGGTTTTCTCCCACTCACCCTCTCCACCCTCTGACACAATAGCTCCCTTCTTCCCTGACAG--AGTAACCAGGCTCTTTGAGGGCCTCCAGGTAGAAG----CCTGGAGGTTAGCAAGGAGGGG s bosTau2.chr1 44692425 324 - 102834029 aggctaaaattcttaACAGGATTTGAAAACCTTTCACCTGGCCCTTTCAAAATAAGAGGATTTATAATCTTTTCAAAAACAACAAGAATCCTGACACAATCTTAATTACTCCAGCTGTCAAAACTGTTTAAGATTGATGAGGTCTGCATTAAGCTGTTAGAAGGTGATTAACTCATTTGTCCTGAATGG-GTGTGAATTCCAAGGAAATTGTTTTTCCACCCTCTTCTCTGTTCTGCCTGCGATACTA--------TCCTTAGATGACTGCTGGTGACAAGGTTCATTAAGGCAGTCAGGATGGAAAGGACTGTGGAGGGGATTGAAGCGGGG a score=2771 s mm7.chr9_random 806082 77 + 9745104 CTTCCACCGGTGGTGGGTAGGAGCAGGGCATGATATTCTTAGAAGGGAGAAAGACATATGTGAAGATCCAAAGATGG s bosTau2.chr1 58142583 73 + 102834029 CTTCCACAGGTAG---ACAGGAG-AGGGCAGAGTCTTCTCAGAAGAGCCAATAACTGATGAAAAGATCCAAAGAGGG a score=17978 s mm7.chr9_random 807736 774 + 9745104 GAGACAGTAAATGACTTGCCTG-GGCACAGGAAGATTGCTCTGCTCTGTGTCCTTCCATTCCTGGACCCACCCCCTCCCTCTCTCCCCACCCCCGATCTTTTTTTGGGGGGGTGGGGGGAGACAATGCCTTTGACCTACTGACCTGACCTGATAACCAGGATTGGGGAAGCTGTGAGTCAGAAGCAGAAAATGCCA-------------CACCTTGTTGGGTCAAGAGGTAGGAACAGGGTCAGAGTTGGGGTCAGGGACAGGATAATCCCACCTTGACAATGGAATTCCATCTTTTGCGCTCCGGGATCAAAGTGA-ATGAGTCAGGAGGACTTGCACTGTGCC--TGTTGTCTGACTGG----------------------------TAGCTCAGTGAGTTTATCAT---------------------TGCAGGCTGGGAGTTTTCATCTGTC---------------CCTAGTCATCCAGTGCACAGTGAGCCAGAAGTATACAATTGCATAGTGATGTGTT------AGGCTGAGGATCAGCCTTCAGTAACTTG-------------CAGCTGGGGCACCCTTT---CAATGTTAGCAAT-CCAGGGAGGCAAAGCAGTCATCAGTGGGTTGGCTACTGAGTGTATCCCGAGTTAAGCAAGGCAGACACTTTGAGGCCACTTCATCCAAGCCAGGGTGGGGTCCAGTGACTCATCTCTTCCTCACAGCAGGCTGGTCCAAGAGAGCACCAA-TTCACACTGCTGTTTTCTGGACAG----GGGTGGGAGATG----CTTCAGGTCCTGTAGCCTTTATCCTA--TCTTTTCCTTTCCTTTTCTAGTCTCCAATATCGTCTCACCCTTCAAC-TTGTGTCCTTTAT s bosTau2.chr1 58147355 815 + 102834029 GAGAATGTAAAAGACTTGCCTTCAGCATGGGAAG----CTCT-CTCTATGCTC-------------CCTACACCCTCACTCTTT------------TCTGCTTGTTAGCCCAAGTAGGAAGACAATACTATTGACCTACTGACCTGG-----TAACCAGGACTGGGCTGGCTCGGATTCAGAAGCATACAATGCCAGACAATTTCCCATCTCCCTGTTAGGTCATGAAGtaggattaggactagagctagggtcagggatagggtaatggtACCTTGCCAATATAATTATATCCCTTGCACTCTGTGATCAAGATGATTTGGGTCAGAAGGTTTTGCTTTGTGCTAGAGTCATCTGACTAGCTCCCAAAGAGGCCACCCAGGATAGTTTTACCTTAATGAGTTTACCATAAAGCTGAACCTGTTTCATAGTCAAGTCTGAGA---TATGTCTGCCTAAAGAAGACTAACTCCCAGCAATCCAACTCATAG-GAGGCTGAAGTATATAACCAGATACCCATGTATTCATTAACAGCTGGTATTAGTCCTTCAATAACTGGATGGCTCCTCCCTCAACCAGACCACCCTTTTTCCGATATCAACAATCCCAGGGAGCCAAATCAGTCATCAGCAGGCTGGTT------TGT-----GAGTTAAGGAAGG----------------ATTTCATCCAAGGCAGG--GGGCCTTGGCAAGTCATCTCCACCTCGCAGCAGG--GCACTGTGTGAGCTCCAATTTCATGTTGCTCTTTCCTGGACAGTTATAGGTAGTAAATGCCAACTTCTAGCCTCCTGG-CTCTATCCTACTTCTTTTTCCTTCCTCTTTCTGTTTGCCA----GCCTCATTCTTTATCTTTGTTTCCTGTAT a score=5362 s mm7.chr9_random 810315 195 + 9745104 CCTATACTTTTCCTATCATTAACTCCTAACATAGGGCCTGGTAGTATAGTAAACATTGCTAAGAT----GTTTTAGATCACTGAATGAG--------------AGTGGTTGAAGAAAATAGAAATCAGGGGACTATCAGCAAGGCATCGAAT-----CACCCAAAGAAAGGGTCCAAGACCTTGTAAGGTCAGATACCTTGTCTGCCTGTGGTGACCA s bosTau2.chr1 58149283 216 + 102834029 cttacatctgacttatacttaactgctaatatcaggcctggca-tacagtaggtgctcatgaaataaatgtttTACataaatgaatgagttaatgaatggatgaatgGTTAAACAACAAACAAATCATGGAAATATCTGGAAGGCATCAAATATCCATACCAAACAAAAGGTCTCTGGGTCTTTAAAGGTCAGGAACCA-GACTGCCTGTAGAAATCA a score=11474 s mm7.chr9_random 810604 282 + 9745104 CCGCTTCCTGCT------GAGCTGTCTGGCCAGTGTGTGCTGCATTCTTGGGAGCTGAGCACTGGTGGAATTTCCAGCCTCGGGAGCAGAATGGAACTTGGAACAAATAGCTCAGCAGAAAAGAACCCAGCAACAATGGGGTT--GCCCAGCTGCCTTCTGCTAGCTCTCG-----ATAGAATATCAGAGCTCAGCAGCCCTTGCTGAATGGGGAGAACTGACCTCCATCAAATTGGGC--ATTCTGAGGACCCAGAGAGAAGTGCCATGTTTGGGCAGTCTTAGTCTTTGAAGAag s bosTau2.chr1 58149629 290 + 102834029 CTGCTTCTCATTTCCTGGGAAGTCTTTGGCTAGCACGAGCTGCATTCCTTTGAGCTGAGCATGTGTGGAACTTCTAGCCTAGGTAGCAGAATGGAACTTGGAATGAATAGCTCAGCAAAAAAGAACCCACGGACAATGGGGCTGGGCCCAGCTTCCCTGTGCCAGCTCTTGAGCTCATGGAATATTGAAGCTCAGCTGGCCTTGT----CGGGGGAGACAGATGTCCTTTGGATTGTACCACTTCAGAGGACTCAGA---AATTTTCACATTCAGACAGCATTAGGCTCCTTAGAAG a score=10970 s mm7.chr9_random 811717 440 + 9745104 TACTTGAGACACTGTGCCTTATTCAGAGTTGAGTAA-------TGCCTGCCTTCAACTCTTTAATAATCTGGAAGACAAGATCTAGATACAAATAAATGG----------------------ACCTGCATCAAT-AATCCATGACCGGCTTGAAGGGATCAATGGCGCAAGCAAATGCAGAGAAGGAGCAGCAGCCAAGGGTTGACGCCACAGCAGTCCCTCCTGTGGTCTGCAGTGTGATGGATGGCATACGTCCCAAACGCCATTGTGGGGGAGAAATTGAGGTCGGATCGACAGAGAG--TAGTGTCTTTGCGGCTGGGTC---ACCTGTAGTT-AGTCTCTGCAGCATGAAACGGGTCCCTTGCTCTTTGACTCTAATGCCCAGAAACCAATGGCAGCTATTCTCTCGAGCTGCTCTTTTTAAGCCTCCCTGGCTACCCTCCTCCTGGCAGGTTACAGGGGTCCTAgtaacc s bosTau2.chr1 44683475 458 - 102834029 TATTTAAGGCAACGTGGTTTATTCTAGGCAGAGTAACTTGTCATTCCTGCCTTCAACTCCCTTATAATCTACAAGAAAAGACCTAGATATGAATAATTGAAATTTAGCCCTCTCTTTCTTATATCTCCATCAATGGATCAGTG--TGTCTTGAAGGAATTAATGATG--GGAAAAAGCAGAGAAGGAACAGCAGC----------TGCAGCAAAATTCCCCACTACATCTTCCA--GTGATTGAGGGCATGTTCTTCAAACTTGATCACATATAAAAGACTCAGGTCAGGCCAATAGAGAGACTAGGGTCTTTGTGGTTGTGTCATTATCTACAGTTGATTCTGTCCTCCAGGAATCTAGTCTCCCTCTCATTAAATCCCCTGACCTGAAACTCACAGCATATATTCATACCAGATTTTCCTGTTAAATCTCCCGTGCT-CCCTCCT-CTGGTGTGTTACACAGAGCCTTGAAACC a score=9226 s mm7.chr9_random 813134 827 + 9745104 TAAAATGaggg---gggtggggagcaggaaagggcagaaaaagaaggaaagaggaaagaagacaaggaaggtaaaaagaaagTTTGCTAAGAGATGTTAAGCAAAGCTGGTGGCACTGGGCAGTGCTGAACTTGGACAATACCACAGGAAGATATGTGGTGTCACAAAAGGAAGTCACCTAGGAACCATCCTGGGCTGGGGGAAGCAGAACAAATATGTCTGCTTATTagccaggtgtggtggcgcacaccttcaatttcagcacttaggaggcccaggcaggtgaatctctgagtttgaggtcatctccgtcttcagagccagttccaaggcagctcaggactacatagtgaaacctgtctcaaaaaacaaaaCAAAAGAAAGGTCTTCTTATTGTTGGCTACAGCCATAGAGCCTTCATTTA-TCCATCGATATGTTCAGAATGTAGGTCTTCAATAGCCACAACTAGGGAAGGACTTGTAAGGAAAGACAGG-----AGGGAACAGGTGT----GGAAAGACA--TCCCTCCATTTACTAGCTGGGTCCTATCTTTCCCCCAAGGCTACAGACATAGGACTTAGCCATTTCCTCAGTGGTTGTCACAGCTTTCTCCTCTACCCTTTAGAGGAAGCAGAA-GTTTAATGCATACC--CAGACCACACGTCTCATAGAGAAACACACATTTGATTCTCCAAGGCCCCAAAGTCAAGTCA--GGTGGAAACAAGGATATTTT--------TTATCCCCTTCT----------------CTGTCCTAAGATCCAGCATAGGAGCCAAAGT--TAAACTGTAGCAATCACTCAAACTCAAGTCAGAGCAGGAGCAATTCT----AGGTGCAATTGTGTA s bosTau2.chr1 58150591 667 + 102834029 taaaaggaaggaagggattgggagcaaggaggg------aaagaagggagggaga-----------gaagggaagaaAAA--TTTGATCAGAGATGTCAAGGAAGGTAGGGGAGA---GGCAATACTGAACTTGGCTTGCATCACAAGAAGATGCCTGGTGTCACAGAAGGAAGTTACCTAGAGATC---------------------------------------------------------------------------CAC--------CCCAGGTAGTTG--------------------------------GAGTCAGT---------------------ATGGGGAATT---------------AAACATAAG---------CTTGCGATTGGCCAAGACCA--GCTCCTTGATTTGCTTCTTTGACATATTCTGGATTTAGTACTTTAATAGT----AGAGGTGAAGGGAGTGTAGGGGA-GACAGACTTTAACAGAAAAACTGTAAAGGAAAAGACAAGTACCTCCATGAATTGGCTGTGCTCTATCTACCCTACAAGGCTACTAACATA--ACTGAGTCATTTCCTCAGTGGTTGTGACAGTT-----CTCTGTCTTTAGAAGGAAGTGGAAAGCTTAATACCTTTTATTAGACTGCCTTTTTCATATGGGAGGATTCATTTCATTCTC-AACGCCCAGAAGGTACTTAAATGGTACAACCACGTACAGTCTGGGCACATTTGCTCCCTTCTTCTATATATGCCATTCCTTTCCTCTTATC------AGGGACAAAAATGATAGATTATAGCCATCAT-----CTCA--TCAGGGTAGGGGGTATTATTTACATGTAAAATTATTTA a score=47910 s mm7.chr9_random 814392 1096 + 9745104 TCTCCATCTCACAAGAGCTAGCGTTAGAGGGTCAGATTTATTTAGCCTGACCCTG---------------------GTAGACACAGCTAGTCAAAATCAGTTCCCTTCCTTTCATGCACTGGCTTATTTAAGATCCTTCCGTAAATGGAACCACGAATACTAATCCAGCGCTCCTCATC------AAAAGCATTCCATTCAGAAGAAAAGTAATAGGTGCCCGACCAGAGAGGGTGCGAGTACAGAAA--AGCAGGGCAGGAGGACCAAGCTTGAACATAGCTGGCTTAACATGGTCTCTTTCCTTTTCCTGAAAGTTCAAACGCCTACCAGGCCACAGTC-----CTGGCGAGCAGACGCACGTGTACCCTGCGCATGCGCGCAACCAAGGCACACCCGCCCCCTCCGGCTGGTCTTCTTCAGCCAAGTCACCAAC----CCTCTAAATGCCCGCCCTCAAGGCAAATTCCCTGGCCAATC-GGAGGCAGGAGTCACTAGGGACGTCACTCTCTTTGCCTACACCCGCTTTCTCCCCGCCCCCATAC-AGGGCACCGCCCCGTAGAAGGAACGGATTGTCACCTAAGCGCTCCGTCCGGGCATCTGATTGGCTCTCCCGGAAGACCCGCCCCCTTCTCATcccgccgcccgcccccctcggcgcgcccACAGCGGCGGGCGGAACCGAGCGCGCAGGCGCGG-CGCTGCCTCTCTCTGCTGGTGGcccgccctccctcctcccct-ccctcccctccccgtcccctctcccc--ctccTCAGGCCCGCG------CGTCTTCCTCCCGCACGCGCCGTCGTTAGCCGAGCGCTC--GCCGGTGC---------GCGCCTTCCTTGT-CCCTCAGGCAGCGGGGCGGGCGCGACCCTGCTCCACGCTCGCGGT-----------------------------------------------TCCCAGCGAGGAACGTACCACCAG-----AGCAcg---gggggagccgggcgccctgccgcccgcgcctcggcgaccccgcggggcTGAGGCGACGCCGCACCCTGCAGCCTGAGCGCACAGCCGGCCTTGACCCAGAGCTCGGAGCCGCGA-GCGCCGCGCCCTCCGCCGGCCCCACCCATCCGGACC---------GCGGCCATGGCCGAGACCGAGGAGCGGAGCCTGGACAACTTCTTCGCCAAGAGAGACAAGAAGAA s bosTau2.chr1 58151519 1205 + 102834029 TCTCCACTTTACA-GATCAGGCGCTTGAGGGTCAGATTTA----GCTTGACACTATTTCTAGCTATCTCACAGAAAGTAGA---ATTCAGATAAAACCAATCTCCTTTTGACTACCTACTGGTTTACGTA-GACCTTTTAGTAAATAAGAACTAAACTTCAAGCCGAAAGCACCTCATTTTCATAATAATCATCACCTAC-GAATAAAATGAACAGTTGCCAGACCAGAGAGGGTGAAAATACAGAGGCCAGCGGAGCAGACGATACATTCTTTA-TATAGCTAGCTTAGCACAGGGCCTCTCAGTCTCACTAAAGTTCAAACCACTACAAGGCCACAGTTTGCGGCGGACTAGCAGACACACGTGTACCCTACGCATGCGCCTAGAACGGACCTACCCACCCCTTC-GACCGGACCTCTTTAGCCAAGTCACCAACAAGCCCTCTAAATGCCCGCCCTCAAGGCTAAACCCTCGACCAATCAGGAGGCAAGAGCCATCATATACGTCACTTATTTAGCATACACCC----TCTCCCCGCCCCCAAGCCACAGCCCCGCCCCGTCTGAGGCAGGGATTGTCGCCTAAGCACTTCGTCCTGGCACCTGATTGGCTCCCTTGCCAGCTCCGCCTCCGTCTCCTCTCACCGCCC--TCCCCTCCACGCTCCCACAGAGGCGGGCGGAGCTAAGTACGCAGGCGCGGGCGCTGCCTCTCTTTTCTGGTGGCCCGCCCTCCCTcctccccttccctcccctccccaccccctatcccctcctctcccGGCCTGCGTGCTCGCGTCTTCCTTCTGCACGCGCCGCCGCTAACCCAGCACTCTCGCCGGAGCCTCTGGCCCGCGCGTTCCTTTTTCCCTCCAGCTGTGGAGCGGGCGGGATCCTGCACTGCGATCGCGGCAGCAGCTGCAGCCCGGGCGGGCTCGGGCGGCGGCAGCGGCACGCGAGCCCCTAGGAGGACCGTACCACCGTCCGCCAGCAGGCGGGGGGGGGCCGGTCGCCTCGCTGCACACGCCTCAGCGACCCCGCGGGACTGAGGCGTCGCCGCGCCCGGGAGCTTGAGCGCCGAGCCGGCCTCGACCCCGAGTTCGGAGCCTCGGCGGGCCTGGCCCGCCGCCGGCCCCACCCATCCGGGCCAAGGAGGCCGCGGCCATGGCTGAGACGGAGGAGCGGAGCCTAGACAACTTCTTCGCCTAGAGAGATAAAAAGAA a score=5193 s mm7.chr9_random 815488 191 + 9745104 GAAGGAACGGAGCAGTCCGGCGGCCAACGCGGCGAGCGGCATGGACGGGAGCAGTGCGGCGGCGGGCTCCAGGCCGGGCGATGGCTGGAGCTCCGGCTCTGGTGCCAGGTCGGACGACAGCGGGAGCTCGGGCTCTGGTGCTA--GGTCCTTAGACAGCGGGAGAACGGGCCCCGCCGGCAAGGCCATAACGA s bosTau2.chr1 21917218 167 + 102834029 GAAGGAGCGGAGCAACCAGGCGGCGAGCGCGGCGGGAGGCGCTGGCGGGAGCAGTGGAGCCACGGACGCAG---CGGGCGGTGG--GG----CAGGCGTGGGGACCCGGCCAGGCGATAGCGGGACCGCAGGCCTGGGGGCCACTGGCCCT-----------------GGGGCCGCCACCAAGGTTGTGACAA a score=6230 s mm7.chr9_random 815679 77 + 9745104 AGGATGAAAATGAGTGGAAAGAATTTGAGCAAAGAGAGGTTGATTACAGCGGATTAAGAGTTCAGGCAATGCGAATA s bosTau2.chr1 58153390 77 + 102834029 AGGAGGAAGATGAGTGGAAAGAATTTGAGCAAAAAGAGGTTGATTACAGCGGCCTAAGAGTTCAAGCAATGCAAATA a score=9683 s mm7.chr9_random 815756 141 + 9745104 AGTGGAAAGGAAGATGATGATAATGAGAAGAGAGAAGATCCAGGAGATATTTGGGAAGAAGGTGGAGGTGGCAGTGGAG---CAGAAAACTCTTCAGGTCCCTGGAATAAAACCGTTCGGGTACAAGCGCCTCCTGCTCCAGTA s bosTau2.chr1 58161924 144 + 102834029 AGTGAAAAGGAAGAAGATGAAGTTGAAAAGAGAGAAGATCCAAGTGATAATTGGGAAGAAGGTGGAGGTGGTGGTGGTGGTGTAGAAAAGTCTTCAGGCCCTTGGAATAAAACTGCTCCGGTACAAGCACCTCCTGCTCCAGTA a score=12605 s mm7.chr9_random 815898 163 + 9745104 CAGTTACAGAAACCCCGGGGCCAGCAATGCCCAGTGGTGTATTTAGGCCTCCTGAGGCAAGGCTAACCACAACAAGGAAAACACCACAAGGACCACCGGAAATATACAGTGACACACAGTTCCCATCCCTGCAGTCCACTGCCAAGCATGTAGAGAGCCGGAA s bosTau2.chr1 58162594 163 + 102834029 CAGTTACAGAAACCCCAGAACCGACAATGACTAGTGGCGTGTATAGGCCTCCTGGAGCTAGGTTGACCACAACAAGGAAAGCACCACAAGGACCACCAGAAATCTATAGTGATACGCAGTTCCCATCCCTGCAGTCCACTGCCAAGCATGTAGAGAGCCGGAA a score=39130 s mm7.chr9_random 816061 711 + 9745104 GGATAAAGAAATGGAGAAGAGCTTTGAAGTAGTAAGATACAAAAATAGAGATAGGGAGGAGGTTTAAAAAAAAAAAAAGGCCCTTAAACTTCAGCTAGACCACCAGTATGCTGTGCTTGAGACGCAGAAGTACAGCCACACACAGTACAGCTAAGGAATGGTCTTTACTAAGCCTTCCAAGGTAACTAGACCACAGCTAACCACCAAGAACAGCCATTCATTGTTTTGATTT---CTGGATCTACAGTGACTGACTGAAGGCCTCAAGTCCAGTGACTGTCCCTGTTGCATTATGGAAGTTCAAGAGTCACAACTGATCTTGATGTGTGTTGTATTTA-AGGGTGTTTCA---TTGTCTTAAGTAGTGAATTAGATTCAACAGTGT--TTCCATAGTTGCTCTGC--GTATAAAA----------CCAAACCTGCAGCCAGTGGTCATTCAAACATC--TTTATGTTCAGATACTGAGCCTTCGCAA-GGTTGACTACCTCAGATTTGCTGCCCTTAGTTGTGGATTTCATGTGGATCACA---TCTATAT---AAGGTTACAGGTACT-AGTGTCTGTGTGAACCTTGAAACCACCTCTACTGAATTCCTGTCAGAAG-CCTTCAG-AAGTCAGCCATCTGGGTTCTGATCCAGTGTAAAAGATGAAGAGGTAAGTGACCTTAATTAACCTGTTCTGTGCCCCATCC-TAAGGCATACTCT---GTAGGCTGTGGCTATGTTAGACT s bosTau2.chr1 58163911 740 + 102834029 GGATAAAGAAATGGAGAAGAGCTTTGAAGTAGTAAGACACAAAACTAGAGGTAGGGATGAGTTTTCAAAAAACCA---GGCCCTTAAACTTCAGCTAGACAACCAGTATGCTGTGCTTGAGAATCAGAAAAGCAGCCACACACAGTACAATTAAGGAATGGTGTTTGCTAACCCTTCTAAGGTAACTAAACCACAGCTAACCGCCACGGACAGCCATCCGTCA-TCTGATCTCTGCTGGATCTACAGCCGATG-CAGACCACTTGGTATACA-TGACTGACCATGTTGCACTATGGAAGTTTAAGTGTTACAACTGCTCTTTATGTGTATTGGATTTAGGGGGGGTTTCATAGTTATATTAATGTTCGAACTA-ATTCAGCAGTGTTCTTTCATAATTACTGTGCGAGTACAAAAAAAAAAAAATCAAAACCTGTAGCCAGTGGTCATATCAAAATCTTTTTATGTTCAGATACTGAGCCTTCGTAAGGGTTGACTACCTCAGATTTGCTGCACTCA-TTGTGGACTTCATGTGGATCACAACTTCTGGATAAGAAGGTTACAGCTATTAAGTATCGATGTGAAACTTGAAACCAGCTCTACTGGATTCCTATCAGAAATCCTGCAGAAAGTCAGCCATCTGGGTTCTGATCTGCTGTAAAAGATGAAGATTTAAGTGACCTTAATTAACCTGTCCTGTGCCCCATCTATAAGGAATACTCTGAGGTGGACTGTGGCTGGATTAGACT a score=17479 s mm7.chr9_random 931568 1138 + 9745104 TGAAGCCAATCCCTCTGCCGCAGGTCTTAGAGGGTTGTTTTTTGACCCCTGTCCTGGATGTCACCTTGTCTGATT----ATGTGTTAGATCCT-----GCA---CTGATACA-------------------------GTAGGTAAAGAGTGCATCCTAGGGTGACAGCCAATGACCTCCTGAATCGTGTTAAC---TTCTTCATGTC-CTCTGTCCTAACCACGGGACCATCTTCATTTTCATAGCCAAATATCAGAAACAGAACTAAGAAGGTCATTCTAGCATATGTCTCCAAAGGATCT-------------------------------------CTTGAAATA-GTG--------------------TAAA-----------------------------------TGATGTAGG------------TTGCATTGTGTCTGCTTGTTAAAGTCTAGACTGCACAGTCAAGAGATACTTAATTTGGGCTCCTGGACTCTACAAGGCTCACGTGTATA-----TGTGGAGGGG-----TCACCAGATGCTTTCAGATTAAAGGCCAAGTTTGGCATTTGTGTGTTTGTGGGCA----------------------------CCTTAGAG-TCAATGAGATTTCAAAGA--TGGTGACTACA-AAGAGAACAGGACTTATTAACAT-GAAATTGGTTCTAGGGCAGGAACAGTTAGTCCACTTTTTGGAGAAACTTACTGTTAAGATTCCTCCATCCTTGCTGTTCAGTAGAGACAGGCACTTCCGGCTCATCTTCACAACCCACATCTACAAACATGGGAATAAGGGAAAAGCAACTTTAAAGCCCTGACAGTTAGAATCCCCTGTAGAGTATTTTTTTAAGCAATCAGACAGAGCCACCCACT----------CTCTGGGAACTACAACACCCATGTTCATATCCACAAGGGCGTATTTTATTGCTTCCATATCTGTC------TCCTCTAGTTGTGGACTAGCAGGG-CACATGTTATTTGACTCTATAAATGCAGCCTCTGGTAGGCTTGGCA-TGTTCTGTGCATGTGGACAGTTTTCTGAATGAATA----CGAGAGTGAGTCTT---GCCCTTGGCAAAGC---GACAGTATATTCCTCCATCCCTCCATCTCTCCAAGCTGTTAATGTTCAGGGCCACATGCTTCTGGTCACCTTATGAACATGGGAGCAAATC-AAGCAACTTGATGTGGGCAGTCCATCCCAGGGATCCAAGGAGGGTGACAAGAGCGTTGTACCTCAGAGAGGAAGGTGATTTCAAGACAC-AGTTCATGATGAGTCCTAGGAGGGTATATGTGATCTCTCTGA s bosTau2.chr15 43513853 1300 - 53815408 TGAAGC-AGTCCCCAGGCTGTGACCCTTGAAGGGCTGGTTTCCCAGATCTGCCCTGGATGTGACTCTAACTGTTTCTCCATGT-TTAGAGActaataggcagacctaataggcagaAATGTTGGGGCGATTCCTCATGTGAGTGAAGAACACATCCCACAATGATGGCAAACAGCCTCTTGAATCATCTCACCACTCTCCTCCTGACACACTGTGCTAGACACAGG----CCTTAGTTCTCTTATCCAAATGTCAGAAACAGAAGCAAGAAAGCCATTCCAGCACTTATCTCCAAGGAAGCTAAAACCGTTGTGTACAAACTCCTCCAGAATCACTGCCTTTAAAATATGTGCCCGGAGAAAAGATTTTAAATAAAATCATTTGGCCTGTCCAAGTCACATAAGGATGGTTTGATATGGGACAAATCAGATATGACCTGGTGTCAGCT-GTTAAGCTCCACACCTTCAAGAAAAAGGATTCTTAACTGGAGTTCCTAGATTC--CAGGGCATCCACAGATGGGCACTGTGGGGGGGCGGGGTCACCAAATCCCCTGAACCTGTAGGC-AAATTCAGTATTTCTGTGCTTATAGGCATCGTTTTGAGGAGTATGTCTGCCCGATGCCTCAGAGAGCAGAAGAAGCTCAAAGGCGTGGTGACTGcagaacagaacaaaacagaacagCAAAGGAAGCGGTTTCTGG------------ATTTCCCTG---GGGGCAGCTTACTGTGAGGATTCCTCCATCCTGGCTGTTCAGCAGAGACAGGCATTTCTTGCTCACCTCCATGGCCCAAACCTAC-AACA-GGGAGC--GCGAGAAGGAGCTTGCCTGTCC---CAGCCACGGTCATCTGCAGAT--TCCTTCTGGGCGCTCACACAGAACCGACCACTTCCCACTCCCTCCTTGCCACCGCCAGGTCAGTCCCCATTTCCTTCACAACATCTGTGATTGCTCTCATTTCTTTCCCACGTTCATCT--TCCCCAACTACGAGGGCCACATCGTATTTGACTGTGTAAATGCGGAACTTAGCACCGTGCACAGCGCCCTGGACACTCAGCTGGTTTGCAGAATGAGTAACTTACAGAGTGACTCATCCATCCCTCAGCAGAGCAGGGGTGGAACCTCCGCCCAGCGTTCCCCATTCCCA--CCGCCAGGGTTTTAGTCC-CCTGCTTCTAGCCTCTTCATGGCAACGAGAGCAGTTCTATGCAACAGAACGTG------------------TTAAGGTACGGAGAAAAGAATCCGGTACCTCGGAGACAAAGGGGGACTGAAGACACAAGTTCATCACGAGTCCCAGGAGGGCATACATGACGTCTCTGA a score=5733 s mm7.chr9_random 982706 125 + 9745104 TTCCATTTCCTTTTAGGTATGGAGAAAGGTGAACTGTGAAATCCTGGCCTCAGAGCACAGGCACCACTTAGCCTATCTCTCCAGTTTCCC--AAGTTATGTAAAAGAGGT----------GATGCAACTTTTTAAAG s bosTau2.chr15 43729454 137 - 53815408 TTCCATTTCCTTTTAGATATGGAAAAACGTGTACTGTGAAATTCTGGCTTCATGGTCCGGTCACAATCTAAATTATCTATATAGTTTCAAAGAAGTTATATAAGAGGTGCCAAAGGATCGGATCCAACTTTTCAAAG a score=5648 s mm7.chr9_random 982950 970 + 9745104 AGCTATTATTCTATATAATGG--------------TTCCACCATAG------------GATGTCTGCTTGTAAACCTGGCATGGTTCTGGAAATTGGGTCCCATGC------------------------------------------------------AGACTCTGACTTTCAGTTATAAGA-------------ACTGGGTGAAGAGGATGC--------------------------CCAGTATCCAGACTGCC-------ATCTAGGGAC------------------------------------------------------------GAACCACATC-------------------------TCTCTGCACAGGAAGAGACTTCTGTGTACC-----------------ATGGCCTGA-------------------------ATGCTTCACCTGC--------CTAGGGGTCTGCTCTTCACTGGAAAGCTTAGCATTGAACCCTTGGAGTGACCAAAGAATACAGAGCAA-GGTTTGATGAAA--------TATTTCTTTCCTT------------AAAAGCATTTTTAATATATTCTGGAGCCGTGAGCTCTACAGCTAC-------AGTGACACCCGCACT---GCTTCTGTGGAGAAGCAGCCTGAACCATTGTGGCAGCATTGCACTGAAG-------GCTTCAGGAGAGCAA-------ACCTGGAAGAT-GTGCCTACCATGAGTCCCTAGACCGT---GTTCTCTGTAATGCTGCTCAC-TGCCATTTAGAA---------TTGTATTTGGTCCCAGGATTGCAA-CACTGATGCTCTGAGGGATGTGTAGAGACGCAGAGAACATTCCA--TCCCCATCTAGCA--------CTGAGATCAGTGGTCAGCAGCAAGGCGCCAGGGTTTGTGATTCTCGACAGCGCCTCTATGGCATCAAGGTGAGCTCACACACTACAGGAGAGAAGACAGCTCC------GATAGCAGGATCAAGACCATTCAGCAGTCAGCATAAAGAGGCTTCCAGTCCTAAAAATAATGTTTCTCGGCATCTGAGCTCCTTTTAAACGCAAG--GAAAGTAGTTCCATTGAAGTTCCAAAGAGCTAGAAATCAAATTTCCGTTGACTAAATGCAGGAATGAACAAATATGAGAGTCAATTTTATAAAAATCCATCC------TTTAAAATTCAGTCTGGTAAAATCGAGTCTTAGTTATGT-----AGTATGTAAAATAATTCT-TCCTTCCTTCCTTTCATTCCCTTCCTtctttctt s bosTau2.chr15 43729679 1262 - 53815408 AGCTATTACGCTGTATTATGAAATCAGAGCAAACTGGTCACGATAGATCAGTTCTAGAAAAGTTTGCTAATAAACTTGACACAATACCAAGAATTAAGACCCACTCATTTTGGGCTCGAGTAGTGTGAATCCTGgggctttccaggtggctgaatggtaaagaatcttcctgccaatgaggagatgcaagtttgatccttgggtagagaagatcccctggagaagggcatggctgcccactccagtattc---ttgcctgggaagttccagggacagaggagcctggtgggctacagtccatggtgtcggcagagtcggacacaacttagcaactaaACAACAACAAGTGTGAACCCTGGGAAGAAACTGCCTCCCAATGGGGAGAGGATTCAGGGCATCTCCCCTCCAGGCTGGAGATGGACTCAGCTGCCTTCTCACCGATCCCCGCTTATACTCCACTATCTCCACCCACCAGGGGCCTGGCTCCAGCTTCCAAGTTCAGAACTGGGGCTTTTGAGCAACCACTGAATGCAGAGTAAGGGTTTGATGAAAACACTCTCTTTTTCTTTTTTTTAACAAAGATAAAAAATCATTTTGTCT---CTCTGAAATAATGGG--ATGCAGCTACCATGTTAGGTGGCACCTGCCCTCACAAGTGTGTGGA-AAGCAGTGTGAGCCTCTGTG-------TGGACCAAAGTGGACCTGTGTCAGGGGGGTAGGGGGGGCACCTGGAGGGTGGCTCCTCTCATTGCACCCCAGACCATGGGGGGCTCTATGACATTGCTCATAAACCATTCAGAAACATGGTGCTTTTTTTTCTCTCCAGGAATGTAAGCGAGGAAGCTCAGAAAGATACAGACACACACAAAGGGCAATTCAGCTTCTCTACAAGCAAGGCAAACCTAAGGCCAGTGATCAACAGAGAAAGCGCAGGGTTCTGGCTTCTCTAC---------ATGG-GTCGGTCTGCGTTCCT----------------GACAGCTACTTGGGTGACAGAAGGGTCAAGACTAT---GTACTTAGCATG--------TCCTGTGTATTCAACAAAG-TCATCAATACTGCAGCCCTCTTTACATGCAAGTCAAAATCCATTACATCGAA-TCCCAAAGAACCAGAAATCAAATTTGTGTTGACTGAACAAAGGAGGGAATGAGT----GGGTGAATACTCTAAGATGCCATTTTAAAAATTTCAAATCCAATCTAATCCAGTTGATCTTGTGTAATACTAAAAAGTACTTAAAATGATTATATTTGTATTTCCTTTTTTGCTCTTGTTGGTTTTTT a score=9398 s mm7.chr9_random 1034505 294 + 9745104 ACAGGGAGGGAGGAGGAGGACAAGATATTTAGAACAAACTGGGACAAAGCCACCATCCC-GGGGATGGTGGTGGCTACTGAGCCAAActgggctgtgctaagccaggctgggctgggctgggctgggctgggctggCCGAGGCAAGACAGTGAGAGTCTGTTCTCTGCCCCCAAGGAGGCTCTTGGTCTCATGAATTTTTTAGCTAACTAGGCCTTGAGTTTCAGATTCCAGGGCGTTGGGCCCAGGCTTCTGGGTTCCATTTACCATGTGAATGCATCTTAGGTCCC----AGGAGGG s bosTau2.chr7 58192956 254 - 69141744 ACAAAGAGGCAGGATCCCCATAGGCT-TTTAGAAGGAACTGGGGCAGGGCCCCAGGCTCTGGGGACAGCGGAGGTTGC-------------------------------------AGCTGCTGCAGGGTGGTTCGGC-------AAACAGAGCTGCTCTGTTCTCTGACTCCACTGAGGCTTTTGGGCTCATGAATTTTTCAGCCAAACAGACCTTGAGTTTCAGATTCCAGGGCGCTGGGCCCAGGCTTCTGGGTTCTGTTTACTGCCTGAAAACATCTGAGGGCCCTAAGAGAAGGG a score=13983 s mm7.chr9_random 1040463 498 + 9745104 CCAGATAACGGGACCTCCAGGCGAGGAGCATGCGCCATAAGTCCCGGCTCATCGCTCAGGAAGGGAGTAAGCTTGAAGATCCCCGAAAAGAGACACGGGGGACAACCTGGGCTAGGGCCAAGAGCTCCGGCTGAGC-CAGCGCGGGATGCAGAGGCCTGAGGACGCGGACAGAAGGGCCTTCGTACTGCCTGCAGCCACGAGTGTTTTGTTTTAAGGCTCTCAGATGTTGCCCTTCCTCAAAACCCCCTCCTTCCCAAGTCAGCACAGGCGACCTACAGGCCGGAGGCTACTCCTACCATAGACTGCGTCCTTCCGATCGTCCTCCATGGCCTCAACCGA-GGAGAGCTGAGTCCGAAGCCAGCGCGACCCCAACCCAAG-CGGGCGGGAGACACCGCGCGCTGC-------------TGGCCCCGCCCTGCCCCGCC--TGACACCGCCCCCAGCGCGCACGCCCAAGACAGCCCCGCCCCTTAGGGG--CGTGCCCAGGGAGGGGCGTTGGGGGGC s bosTau2.chr7 58187693 480 - 69141744 CCAGATAACGGGACCTCCCCGAGCGGAGCATGCGCCATGCGTCCCCGCTGATCACCCGGA---GGGGTATCCTGGGAG---CCCGAGAGGGGACGCGGGG--CGACC-AGGCGGGAGCAGGGGGTGTGGGCTCGGCGCAGAGCAGGATGCA-AGGCC--GGGAAGCAGG-AGGAGGCCCTTAGCA------GCAGC-GCGTGTGTTT-------AAGATCTCAGATGT--CCCTTTCCCAAGGCCCCC-------CAGCTCATCAGAAGCGGACGA-GGGCCAGAGGCAACTCCTACCATAGGATCCGTCCTTCCGCTCGTCCACCATGGCCGCGGCGGGCGGGGAGGGGTGTCCG-GGCCAGCGCGACCCCAGCCCCGGCCGGGCTGGAGGCTCCGCGGGCTGCAGCTCCCCGCCCAGGGCCCGGCCCCGCCCCTCCCATAGGTCAGCCCCTCGCACTCCCACCAATGGGAGCCCCGAGAGCAAGGGGGCGGGACCCGGGGCGGGGCAGGGGCGGAC a score=4646 s mm7.chr9_random 1100821 165 + 9745104 TGTTTGAATCTCTTTCCTCTGTGCCTTTCTCCTTTCTGTATCTGGCCCCGCCTCTGCAACCTCCCC--CCCCCCCCCCCATGGTTTTTAATGCATCAGGATCATTTCAAAG-CTTTGCCTTAGATCTCATCAGCCTAGGGAGA-TGCCAGCCCCTGCTTCGGCTGAATT s bosTau2.scaffold8948 14494 164 + 30395 TGATTGGATTGCCTTCTTTTGTGACTTTTTCCTTTCTG-----AGCCCCCCACCTCCTACCCCACCGACTTCTTTCTCCCTGATTTCCAGTGCTTCTGGATCATTTCTAAGACTCCAACTTCTGTCTCATCATTCTAGTAAAACTGCTACTCTCTCAGTCAGTTTAGTT a score=21961 s mm7.chr9_random 1101079 740 + 9745104 TCTTCCTTCCGTCCTACTTCCGGCTACCCTCCAGTGCCTTCCTACTGCCATTTCCCCACACTTTGTCCGGAATCC----TTGCTATTAATGAGACAATTGGCATAATATAGGATCCTCCCCCTCTACAT-GAACTGACTGCGTTAGTGCTTTGA-TTAAAGATATTTAGAGTTAAATATCAAGATGAA---GTAAACCCAACAAATAGCATTAATATTTATGTGTTAATGAGTGTGTTTCTGTTTAACACTTTAG-CATTTGGAATGTCTAATAGAATTGATGACTTTAT----TTGCAATTCTATTCGTTAATGTGTCAATGAGTAACTGGCTTAAGCCTGTTATTTAATGTCTAAATCTTATTTATTTTATAAACAGTAGAAGAATAATTAAAGGCATTTAAGA--CATATTTATGTCGAACATATTAAATTTACAACTATTGCTTAA----CTGAAAGGG---TCTATGCTAATGAGATAATTGGAATACTGACAAAGGTATTGGCTGAGTTAAATTTCAAAATTCAATTTGAAATAATTAAGGCATTTAATTAAATTTGTAAATGAGACCAAAAGCAATCCAAGCT--TTATAAATGATCATTAAAATCTTTT-TATTTATAGGGAGAATGAGAAAATGATTTATAATTTAAACTGAAACAAAGTTTTGCACTTGTGACTTTACAAAATTGGACAATTAATTTTAAGCCAATGTTCTCATGAGTATTTATAGAAATAGATTAAATATACAGGTTTGGAGTCT s bosTau2.scaffold8948 15990 730 + 30395 ttctctttgtgttgtactttgtgttggtctctagtgtcttcatacagttgtttttt-atatcttatcaaagatttataattgttattggcaagaaagttaatctaatacaggctactcctccaGTCAGTAGAACTGGATAGGT--GTGTTTTGAGTCAAGGTTATTTAGAATTCACTATAAAGATGAACAAGTAAATGAAACAAGCAGCAATAATATTTATATTTTAATGGGTTAGTTTCTGTTTGGTATTTTGGGTGTTTGTGATATTTAGAAAAATT--TGACATGATAGGTTTGCAGTCCTAACTTACAATGTGTAATTAAATAATTTGTTTAAGTCTGTGGTTTAATGTTTAACTCTCACTTATTTTATAAATAATATGGGAAGAATGAAAGGCAGTTTAGATTCTTATTCATATTTAACTTATTGGATATACAAATATT-CTTAAATACTTGAGAGAGGTCTCCCTGTAAATCAGATA-TTGAAATACTTAAAAAGGTAATAGACTATATTGGATTCAAAATTCAATTTGAAATGATTAACACATTTAATGAAATTTGTAAATAAGACCAGAATTAATACTAACTCCTTATTAAAGACTATTAAAATTTTCTACATTTACATGGAAAATAAGATAGTGATTAATAAGTTGAA-----------TGTTGTATTTGTAATTTTATTTTAT-------TTatttttaaa-----------attaatttttattggagtatagttgatttacaatgttttagttt a score=2529 s mm7.chr9_random 1102016 83 + 9745104 TCCTCCTCTGGAAAATGGAAGTGATGGCGTCTCCCTAAAAACAGGTTTCAATATTAATAACTCAAGTGCTGCTGATAGGAATA s bosTau2.scaffold8948 17007 80 + 30395 TCTTTATCTATAAAATGAGAATAGTGATGCTTCCCTAAAAGTACGTGTCTCAATAAATAAT---AATGTTCATGATAGTAATA a score=2861 s mm7.chr9_random 1104338 251 + 9745104 CTTCTGAAGAATTAGCTCTAGTCAGTTCCACAGCAACAGAAACCACG---------GCCTG-AGCAAGCACCCTTGTAAATATCATATTAAAGAACAAGACACGGAGTGAGTATCAGGGAAGG-----ACCACTTCTACCCACCTATCTCAAATGAGAGGAGCCTGCCATACCTGATCCAATTCAACTAATTGTCAATGGCTCAGTTCAG-----AATTTGATAGTTTATTCAGGCCTAATAGGAAAGATGTTAAGATAGTTCTTGAAACT s bosTau2.scaffold8948 23777 253 + 30395 CCTTAGAAGAATTACATCTAGTCAGTTGCAAAGCAAAATGAGCCATGATGATGGCTGTCTGTGGGCAGTGCC-------AGATTATATTTATG--TATGAAGTGTCATGAGCATGCAAGAAGAGAGTCATCATTCCTACCC-----TGGCAGGCTGGAGGAGGAGGTGATATCCGGTCCTATCAAAC----TGTGGACTGATCAGCTCAATGAACAACAAAATACTTTTCTGAAGCCAGATATTAAAAGTATTTATATGACTTATGAGATT a score=3518 s mm7.chr9_random 1106186 96 + 9745104 TCCTTAATTAGATAAGAGCTACTCAGAACATCTTCAGATCAATTTCTATTTCCTATTTCtaaattttttaaaaattaattaatttatttttttaGA s bosTau2.scaffold8948 24380 96 + 30395 TCATGAATCAGATGCAAGATACTCAGAACACCCTGGCATTAATTCTCATTTACTATTTCTAAAGTTTTTCTTTTTTAACTAGGAAGTCTTTTTGAA a score=16388 s mm7.chr9_random 1112802 259 + 9745104 ACCTTTTTCTGCAAAACTTACCATGGAGGCCACCCAAACCATATGCCTTGCTTTGGGTGGCTGTACCAACTGGCCTTTTTACCGCATTGCGGCTGTTCACAACAGGTGTCCCGGGGATGGCCGTTTCGGGGAGCAGTTGGCCTCCTAAGATCCACTGCCCAACAACAACGGAGAAAAACTTCATACCCTCACCCTGGACCGGATCTGGCATTGGATTGGCTGTGGGACTCACCTGTCTGAGCCTATGGAGAATCTTCGG s bosTau2.chr28 12365471 258 - 34887537 ACTGTCCTTTGCAAGGCCTACCGTGGAGGCCACTTAA-CCATCCGCCTTGCGCTCGGTGGCTGTACCAACAGGCCTTTCTACCGCATCGTGGCTGCTCACAACAAGTGTCCCAGGGATGGCCGTTTCGTAGAGCAGCTGGGCTCCTATGATCCAATGCCCAACAGTCATGGAGAGAAACTCGTTGCTCTCAACCTGGACCGGATCCGGCATTGGATTGGCTGTGGAGCCCACCTCTCAAAGCCTGTGGAAAAGCTTCTG a score=9000 s mm7.chr9_random 1113061 233 + 9745104 GGTCTTTCTGGCTTTTCCCCCCTTACATCCGATGATGTTCACTGTTGCTGAGAGACCACAGAGGAAGAGAGCATTCGAAGTCCTCTTAGCGTCTCAGAAAGCAGAATTGGAGCCCAACAAGACAGAAGCAAGCCGACTTCAGCGAATACAGCGCTGGCTGCGAGGTCAAAGGGCCTGTAAAACGTGTACATAG-------AGTTTTGTGTTGGGTTTGAAGATCAATGAGTGGAGTTTTT s bosTau2.chr28 12366210 235 - 34887537 GGTCTTTCTGGCTTTTTCCCTCT-GCACCCGATGGTGATCACAAATGCTGAGAGGCTGCGACGGAAACGGGCACAAGAAGTCCTCTTAGCGGCTCAGAAAACAGATACAGAGGCTACAGAAACAAAAGAGAACTGACTTCAGTGAACATAGCAGTGGAAACAAACTTGAAGTCCTCTTAAAATATTTGTGCAGAACACTTAGTTTTAT----TATTTAGAGGTCAATAAATGGAATTTTT a score=5046 s mm7.chr9_random 1165362 255 + 9745104 AAGATATGAACT-CAGCCTCT---------AGAGATTTATTAATCTTAGCTGGCACTCTCATTTTGGGA----------------GTGACCTCTTGACCTCTTTTAAGTAA--------GCTTGTGCTGCTCTGCCCTCAGTCCTGTGTGTATCTCCCCCTTTCCTGGATTCCCCCTACTATCTGGGTGTACCCCAGTATTTGGTGGGTTTTGTGGATTTACTGATGATTTGGGGGATGTCAAGACTC--AGAAAAGTTTCAGTTCGCTCAGTGAGGTTACATCCATGGCC s bosTau2.chr15 41058090 288 - 53815408 AAGGTATGAACTGAAACCTCCTGACACTTAAGAGATCTATTGAAGTTGGCAGGAACCTCAGTTCTGTGGTCTGTGATATTACCCTGTGATTTCTTGAGCTCCTTCACTTAGTATTTCATACTTCAGATGCTCCACTCCCAGGCTGGTCTGTATCTTCTCCTTTGTTGGTTTCTATATACCATCTAAGCAC-TTCCAGATTTTCTGAGTTTTTGTCGACTTGTTGGAGATT--AGAGAAGGCAGGGATTGAAGAGATGGTTCAGTTCACTGGGTGACATACAACCTTTGGCC a score=8801 s mm7.chr9_random 1166167 879 + 9745104 tggccggtcgcgagaacacgggtaagaGTACTGTCCCTTCCTCCGTTCCATGAAGACTGGGGATGACCTT-AGCTT-------AGCTGGTACCAGGTCACTAGCCTTGGTGAGTTGGTGATTTGGGATAAGGAGCATAGCTGTAGGTAGGGCAGGGCTGGGAGT-AGGTGTCTGTCTGTAGGCTAAATCCAGATGGTCCATCTGGCTATTGCAGAGGCTCTGCCAGAAAATAGAGGTTCTGGGGAATAATGTTGGGACTCTTGGACTTCCGTAGGAAGTTGGCAAGAGGCAGGCAGGGA--TGCATTAGGGCTCCAGTCAAGCAGGGCCGGGCATAGTTGCCAAAGAGTACTGGAGAGATGAGCCAGAAACTGAGGCTGAAG------------------CTCAGCTCCCGTGAACTAGGGAACCGTCCCTTTGCTTTTGCACTTGTGCGTTCTCAGTGGCCTCGTGGGAC--------------CACCTCCTGTCATGCTTATGGTTTATAGGC-TGC-AAGGTCATAAGATCCTTGAGGACAATACCTGGTAAACATTTTGTCCCTGAATTACCTAGCCAAGAGGTCCAGGCTGAGGCATAAACAACCTAGAAGCAGGGAACCAACAGTGTTGGG----GGAAACCCTACCTCACTCACCTCATACTGAACCTCTAGAGTCCTGG--GAGCCCCGGAATGCAGTAGCTTTGGTAAGGAAGACCAGCCTAGAGGCCTCAATGTTGGGAAAGCATCTCAGAAGG--------CTCACTGTGAGC----------TCTCAAAGGCAACCGTCTTGGTTGGAATTAATCGAGGTCT---------------TTACTGAGAACTTCATCAAGTTTTATGTAAACAGTCTAACTTGATCTCAGCTT--TTCAGAGGACA-GAAAATAGCCACGGCCACCCTGGGGACTTCAGGGTAAAGTTGGAAGCACC s bosTau2.chr15 41058530 880 - 53815408 TGGCTGGCTGCTGGTAAAAGGGCCACTAGACCCTCCATTCATAAGTTCTAAGTAGATGTGGGATGATTTTTAGCATTTGTTCAAGTTGGCATCAG------AGAGTAGGTCAGC-AGTAGGGTGGGGTCAGGAGT----------------CAGTGCTAGAAGTCAGGTAGTTGTTT-TATCGTGGATACAGATGATCCATCTGGTCAATATAGGGACCCAACTGGCAAATAAGAGTTCTAGGGAATTGCATCCAGAACTGTG------CATAGGA-----------------CAGGGAATTGC-TTAGAGC------CATGCAGGGCATGGCTTTAATGCCATAGAGAACTGGAGGGATAAGCAGGAAACCTAGGCTGAAGACCAAGTTTTCAAGTGGGCTAAGGTTTCTTAGACTAGGAAAACAGCCCTTTGCTTTTGAA-TTCTGTGTTTCTTG----CTCATGGGAGAGGCTATAGGATTGCATTTCTCG--ATGCTCATGATGCCGAGGCCTGCTGAGGTCTCC---TCCTAGAG----ATATTTGCTGGATATTCTTGCCTTAATTATCCTGGT---GGGTTCTGGGACAGAACCTAGA-ACTCAAAAGGCAG---ATCTAAGGTGGGAGGTAGTGTAAATCCCATCTCACTTGCTT-GGACATGACCTCCGGGACCCTGGCTGAGA---GAAAGGCGGC--CTCTGGCAAGG--GTTCAATCCGG-GTCCATCCTGGTGGGCAGCAACCTCAGGAGGGAGCCATGTTGAACATGAGCCAGGAGTAGGTCTTGAAC-CAGTGATCTGGTTTTGTATTACTCTGTGTTTATTCCCTTTTTGCTCTTCCTGAAGCTTTGGGAAAGTTTTCTATAC-CTTTCTACCTTGATCTCACTATACTGTAGAGAATAAGAAAATGGTCCTCCCTACATTTGGGGTTGCAAGGTGAAGTGGGGATCACC a score=44536 s mm7.chr9_random 1167130 1681 + 9745104 CCATTTTATTTATATAGTTTG----CATTGGGAtttttga-------------------------gacaaggtggtgttgggttgctgaagaactcataatgttgcccaggctgaccctgaacttaccactctccaccacagccttctagtattgaaagtacagacaagtgtgcac---cacTATGTCTTGTACAGATGACTGTTTCTTGTCCTTTGGTGGTACCAAGGCCATGACTTAGGAGTTATTGGATCTTTGGGCACAATATTTGTTGAGTCTATAGCAACTGAATCCAATCTT----AGACT-------------CACCTTTTTCTTTGGTCCAGTCCTGTGTTTTTAGAACCTGGGGGTTTAGGTCTTCAATGGGAA---TCTCAGGTTGTG-TGGAACAGGGCTGAGGTCTGCAGGTCACAC--AATCTATCAGACTCTTCTACCCCTGACTGCATACCTTTAGATCTCAGCTTAGTT-GGCAACTTGCACA-CTTGGAGTCCTGTCTCTGCCCTCTTGGTTTGCACT-AAGACCCCTAGAAAGGGCCTTCTATTATTTTCTTGCCCAGAATATGCCCCACCCCTAGAGGCCTATACCAGCCCAGCCTGAGTTCTCCTCAAGTTT---GGGGCACCATGGAGAGGGCCTCTGTAGTGTGGAGTGCTTCCCCAGCCCCCACCCCCCAGGAATTCATCCCCAGTCTGCATCCAATTAGGAAGAGCAGGCTGGGTGAGACATTGGCCCA-AACCCTTGTTAAGTAACATCCCTAATTGATGACAGGGATGGGGAAGCGGTTTGGAAGCCAGCTCAGACTGT---TTTAAAATCCTCCTTTCTCCTGGGCTGTCTGCCAGAACTCCATGGCTCGGCTCTCCAGGAGAACAAAGGAAGCTTTGAAAATCTTTCTCCCCCCTCCTTCAAATGCTTATCTGAAAGGACATCGCTGCCCCCTCCCTCCCAAGACTCGGCAATCATAAAAGCACAGGTGATAAACGGCTTCTTCGTATTCATTCATTTTGAAGGTCCTCCCACCCCCAGA-GTAGGAATT---GCAGCAGTAGCAAGAGACAGA-CACCATCTCCGTGCCCAC-TTGATGCCTTGTGAATCTCTGGGAAGTGAGGGAGAAGGGTGAGGGCAAGGGCAGTGGAACTCTGTTCAGTGACAACCTTTATCTCCGGGTCTTGGGCTGTTGAAATGTCAAGTCAGGGCTAGATAGGATCTCCTAACAGCTGCT--GTTGCTAGCTGGGGCCAAGGGCAT----GCCTGATGATGGGCAGGAGGAGGGTCTGGAAGGAAATGCA--ACCTTTTGAATTCTTAAAGGT-AGAGCTGGATCT-------------TTTCTACAAAGGAAAACAGAGGCTTCACGGAGGGGC---------------TTGCTGTGTCCTGGAGACGCTGCCTCTAAAAG-CTGATGGCTAAACCGTTTCAGAAGAGGACCTGCCCCTTCTTTTAAGCCACCTAGCTATGAAC-TGTAGAAGGAAGA------GGAAATTAGACATGGGTACGGATAGGAT------------TCTGCAAGTGAGGGCAAGGTGAGAACTTTCTCCCTTCAAGGCCATGCTTGGGGGCCTGTCTGCCAACCCCTCCTCCGATGCTCTAGGGGATATGTGCCGCCGT-GACAACGTGCGTGTCCTTTCACAAGGGTAGAGTTATGTATAGTAACAAGTAG---CACAAGTGTGTCCAGCTTAATTCAGAGGCAGTTCCGAGTTTGATAGCTGTGAGGAGGTGCTATCAGAGCTGGCTCTTTTATT s bosTau2.chr15 41059472 1693 - 53815408 CCATCTTCTCCAGATGGCTTGGTGCTCCAGGGCTCTCTGATCTCCAGGCTCCATCTTCTCCAAAGGCCTAGGTGGTCCCGTACACTTCAAGATCCCA-------------------------CTTCCCTTTCACCCCAGCAGTTTCCTC-CATCACAAACTGTGGCAGAT-TGAATTTTCACTTTG-CTAAGGAAGATGGTTGTTCCTTGATCACTGGTAGTGGCGAGGCTGTGACTCAGGGTATACAGGCTTCTTGAGCACAGTATTTATTGGATCTGTAGCAGCTCAATCCATTCCTTTGAAGACTGAGGCCCTGAAAGCTCTCTGCACCCTGATGAGGCCC---ATCTTCAGAACCTGGG---TTAGGGAGTAGGTGGGAAGGACTTCAGGCTGCAACTGGGCAGGTATGTAATTGGCAGGAAGCACGGAATCGACCTT-CCATCCTTTCCCTGGCTACCCAAGTTCAGTTCCCAGCATGGACAGGCAGCCTGCCCTTCTCTGAATTCTGGGTCTATGCTCTCTGTCTGCACTGAAGGGTCTCAGAAAGGTCCTTCTCTTATCTGCCTGCCAGCAACATGTCCCA------GAGGCCTGTGCCAGCCCAGTCCAAGCTGGCCTTGAGTGCCAAGGGGCA----GGAGAGGACCGCTA-AGCACGGAGCCCTTCTCGGG-------------AGAATTCATCACAAGTTCGCATCCAATTAGGGAGAGTAGGCTAGATGAGACAATGGTCCATACCCCTTGTAAAGTAACATCCCTAATTGATGACAGGGATGGTGTAGTGGCTTG-AAGTCAGCTCAGATTGTGTTTTTAAAATTCTCCTTTCTCCTGGGCTGCCTGCCAGAATGCTATGGCATGGCTCTTCAAGAGAACAAAGGAAGCTTTGAAAATCTTTCTCCCCCCTCCTTCAAATGCTTATCTGAAAGGACATCTTTTTCCCCTT-------AGTTGCAGCAATCATAATAGCACAGGTGATAAACCGCTTCTTTGTAATCATCAATTGTGAAGG--CTCCCGCCCTCAAAGGCAGGAATTGCAGCAGCAGCAGCAAGAGGCAAAGGACCATCTCGGCACCCACACTGATGCCTATCAAGCCTCTGAAAA-----GGAGAAGGTGGGGGGAAA-------TGAACTTTGTTCAGTGACAACTTTTATCTCCAGGTCTTGGACTGTTGAAATGTCAAGCCAAGGCTAGATAGGATTTCCTGACTGTGGCTACGCTGCTGCCT--GGCTCAGGGGATAGAGAGCTGGCGGTGGGTGGGAGG-GAGCCTGAAAATGATCAGAACACATCTTGCATTTGTGAAGCTAAGAGTTGGGTCTTGGTGGCACTATATTCCCAGAGAGGA------AGGCTGCAGGGAGGGGCCGTTAGATCCCGTGTTTGCAATGACCTTGAGAAACCATCTCTGAAAGAACAGTGCCTAAGCCATTTGAGAGGAGAATCTGTCTGGTTTTTAAATC--CCCAGAAATGTACTTGTAGAAGTGAGAGGTTCTGGGGTTTGGTCTGGGGTTTGGATTGGTTCTAGACTCCTGGTCCCCAGGTCAGCTCGTG------CCCTTGTTCCTCCA----CTTAGTTTATAGTTCATCTGTTGACCTTCACTCT-CTGCTCTGTGATGCACAGGCCCCCCTGGGCAACGTGGAGGGGAGCCCAC--GCCTAGGATCACTTACAGCTAAGAGTGGTGTCACAA----GCTCAGCTTCAATCAGTAACATATCAGATTTTTC-----------AGATGACATCTGAGCTGGCCATTTAATT a score=24603 s mm7.chr9_random 1169562 2056 + 9745104 GTCTCCAACCATAGTGAACTAATTA----ATAAGTTCACATTTTTATTTATTAAGCTCTCACAACTGTTGGGACAGCTGGGCCTTGAACTCAAAGGGTTTCTATTAGAAAGCACTTCTGAGCCTGGGACCATAGGGGCTATGTGCCTCATTCGCTCCCTGCTCCCTCCCTTATACTCAGTCCGACCCTGAGTTTTGCCTTTGGGGCCGA-GGCAGGGGATAGCAAAGTCAGGAGTGGTGAGAGGGTGAAGGTGAGCTACCTTGTCTTCTGGGCACACAGCACTTTTGGGTGGGGGCT-----CTCCCAAGAGCAACTA-CAAACTGTG------AAATTCTCTTCCCCAAATGTAACCACCTCTCTTGCCTTCTTCTCCTTCCTAG-----CTGCTGTGTCTGAGGCAGTGCAGCCAGCTCCCCTGTGCCCTCTGGAGGGCCTTTCTGGCACCTCAGGCACCCGAAGAACCCAGGAAAGGCAGGCAGAGCTCATTGCTAGAATGAGACCCTTCCCTGACATTTCAGCATGC--TCTGCCTTCTGGCATCTCCAGATCCTAGCTGGGGACTCGCTAGGTCCCAGAGGGGATGGAGGCCCCCTC----CCAGAGGTGTCTACACAGGACTAGAAGGGAAAGGATAGT-AGAGAAGAAAGGTTTGCTGGTTCATGGCTTCATAGAATTCAGA-ATTCTGGGA-------------------------TGAT-----------TTAGCAAGTATCAGGAGTTGAG-GGACACCCTCACCCTCACCTGTGGAGACCCACCTCCTAGTCTCTTCAGAAAGGATGGGTGACATCTCTTCCTGCCACCTGCCTACCACTGAGCAT-CCTCAGAAGAGAAAGTCCACTTTCA---------------CTGAAGAA---------TGGGTGTCGG------------------------------------CTGGGAGAGATGG--CATGCTGCA-----ATGGACAGGAGAGCCACAGAGCTCCAGTCATGATGACACTGCCCTACGCCTGCTCACTAGACG-CTATAGTGCCCTGCACTGCAGGTATGGGGTGACCTTTGTGC--TTTCCCTAGTCA-CTTGTGCCAAA--CAAAAAGACAAGTTA--GGCAGGTGCTCTATGAGGATCTGTGCATGGTGCCAGGTGCCACTGGGGTACACTGGGGCCTGATGGGCTGGGAACCTGGTTCTGAGTAGCTCAGGCAGGTCCTGAATGCAGTGAATGCACCTCTAGGAGA------GGTCACTTTGGATATCCCTGGCCT-CTGGGAGATTAACTGCTGTTCCCTTAGCCAAACCACTGGTGTCTCTTTTCAAAGAAACTAGATGCTCATTTACATTTAATTTGCATCTCATTTGAATACCAACTCAGTTAATGTTCGGAAACCACTGAGATTTCTCCCAAGT-CCCTGCTTCTTGCT-TTCTCAGGTTG--TCCCCCCCCCCCTTCTTCTTCATGGTAATCTGTAGCTGGGCCAGCTGGTCTAAATTAGCCTGCTTGGGTGT------ACATCATT-GGTCCAGCTTGG-CTGAGAAGCCCAC----------------------------ATGGAGAGCCAATAGCGG--TGGCCCTGGGAAGTCACCAGCA-----TAGAGGAGGGTCTTTCCTCT--------CCCTACCTCCCCTAG--------------------------GTCTTCCCTCTCCGGGAGCTGGAGCGTTGTTTTCTAAAAGCAAGACTCCAACTGACTGCTGCTGTACTTAACAGAGGGGCAGTGGGTAGGTTTACTCTGCCCCAGGGAAGGAAAAGAAAACAATTAAAGAATTGATAGTTGTGTTTGGGTTTGCATCCTGCGGGCTCCTGGGGTGGTCTGCTAGGGAAA----------------------TTCTTAACTGGGTAAAAGAGAAAGATCTCTTCCAGGGATTTACCAAGTAC---TGTGGGAG--------------------CTGCTGG--------------------GCACAGCAACATGATGTTAA--------------TGAAGGAGGAACACT-------TTGCCTGCCACAACACTTT--------------------TTCCTCC-----CCATCTCTCTGGCTTGTAGAAAACTTTCAGATCTTCAAAAACCTAGAGACCCCATTCTA-GTCTGACTTGCTCACCTCAACTTGCTCCTTCTAAGTTGGGCAGGGGCTGGCTAAGACAGTTGACACTGGTGACTCAGGCTGACCCTTCCCT-GTCAGAGTGGG----CAACATCC-----TGATTCCATTCCCTTGCAAGAACTCTGACTTGAACTACCATGTGGTAAAACAActctcctctctctcctctcctc s bosTau2.chr15 41063040 2245 - 53815408 GTCTCCAACACGAATCAATTTATTAGCCAATCAATAAACATGTCTGTTTATCAGAATTTTACTA-TGCACAGGGGGCTGGCCTCTGAACTACAGGGGTTCCTGTCAGGGAGT-------------GTACGACAGG--CTTGCTTCCTTGTTCCCCCCCAGCTCCCGGGTGTGCTCACGTGAGGGCCCTGCGTCCTGGACT-GGGGCTGACTGCAGAGATGGGCTGGGCCAGGTCCGCTGAGGGCAGGAAGGTGGGCTCCAAAGCCTGCCAAGGGCTGAGGGATGTGAGTGGGGGGCTGACTCCTCCTCTGGGCACCTGGCATTCTGTGGTCTGGAGAGCCTGTGGACC----GCAGCC--CTCACTGGCTCCCCTCTCCTCCTCAGGCTGTTTGCCTTTTGCGGGGGTGCTCAGCCAGCTCCCCTTTGCCCTCTGGAGGTCGTTTCTGACATCTCAAGCCCCTGATCCAATC----------------------TGCTCGCGTGACAGTGTACTCTGCCATTT--GCCTGCCTTCTTCCCTCTGGTATCCCCACACCCCAGGTGTGGAC-CACTAGGGGGCCCAGTTGGTGGAGGAGGCCCCGGGGCCAGGAAAGTCAGC---GGTCT----GGGCAAAGATGGGGAAAGCGGGAGGGACTGTTGCTGGGGGGCCACGGAGACTGGAGAGACTCTGAGAACTGTGTGGAATCCTTGGGGCAGTGTGGTCCCACTTCCTCTGAACTGGGCTCTGGAGTTGGGAGGAGACTCGGGCTGTTTCCAGACAGGAGACAGGTGCTTTTTCTCTCAGA--TGCTGCTCGGCCCTCTCTCCTGTGAGCAGTTCCCCAGCTCGCAGGCCTCAGAAGGAAAGCTGCACTCACAGGGTGAGCTGGTGAACTGGAGCAGGGGGTTGGTGGGTCTTGGGGCCCTGAATCCCAGGAGTGGCTTTGCCACAAAGTGCTGTGTGACATGGGTCAGGCCTCGCACGTGTGAATGGGGGAGGCAC-------------TGATAGCAGGGTCCCAC---CAGTCACTGGACTTCTCTGATGGTGTAAATTCTAGATCTGGGGGTACTCTTTCACCCTTTACCCATTTAGCTTGTGAAAAAGGAAGAAAGCAGAATCACCAGCAGATGCTGTGTCGGG----------GGCACCCAGCACCGAGGAGGTGGGC--AGCCCTCATTCGGTGAGGACC--GCTTTGGGGAGCTCAGGCAGCTCCTAAAGGCAGTGGA-GAGTCCCCAGGAGAAGAGCGGGTCACTCTGGATGTCTCTGGTGGGCTGCGAGATTAACTGCTATTCTCTTAGCCAAACTGC-AATGCTTCTCTTCAAAAGTACAAGAGGCTCATTTGCATGTCATTTGCATCTCGTTTAAACACCAACTCATTTACTGCTCAGGAACCACTGAGGTTTCTTCCAAGTCCCCCGCTTCTTGCTCTTCCCAGGTTGTTTCTCTCCCTCCCTCTCCCTTCCCTGCATCCTGCCACTGGTAGGGCTGGAC------AGGCTGCCGGACTGCGGCTCAGCCTCATTGGGTCCAGCCTGGCCCGAGGAGCCCGCCCATTGGCTGTAGGAGAGAGAGGAACCAATGAGGAGAGGGCAGCGGACAGATCTTGAGCCGCTGCTGGGAAGAATTGGCGGTTGGCTTCCCCTCCCGGCCCGACCCTTCCTGCCCGAGCATCCCTCAGATATCTAGGCTTCTCAGGCTTCCCCCAGCAACAGAGAGAGCG---------GGAGGCGGGAAGCAGGCCCAGTG---------TTAACTGA--------GAATGGGGTTACTATGCCCT-GGAGAGAAAAAAAAAAAAAAAAAAGAATTGATAGTTTTGTTTTATTTTGCTGCCTGCAGACTCCTGGGGAGGTCTTCTGGAGAAACCCTGTGTGTGAGCTGAGGTTTCTCTTCTCTGGGACACAAAG---------TTCTGCAGGTCCACCCTGTATTAATGCAGGAGGGACACTCCCCTGCCTCTCCCTGCCTGCTTCCTCACTCTTGGCTCATACCCAGCACCATACAGTTAAGGCTTAGAAAGAACTAGAGGAGAGAGGCTGAGTGGGTCGCCCACTGCCACATCCTGGTCAGAAGCCTGGAGCCGGCCCCTCCTGACTCCACCAACTAGGCTTTTAGAAAATCTCAAGGTCTCCGAGAACTTAGAGACCTGATTCTACTTCTATCTTGCTC-CCTCCCCTCACCTGTCCTAAGTGGGGGGCCAGCTCGTTAA-------------GGAGACCTGGGCTGCCCCTTCCCCAGCCAGAGGGGAAGCCCAGGGTCCCTTTATTATCCCATGCCCT---------TCTAACCTCACCTAACACCTG----------TCGCTTCCTCCGTCTCTCCTC a score=4081 s mm7.chr9_random 1221828 163 + 9745104 agagagagagagaagaggaaaaggg-------aggagagagagagaATATGGTGCGCATGTGTGTGTTCTGGGTAGATGGCCTTAGGGGCTAGCCTTCTGGGTTCTGATTACAGAGCCCTGAGCAAG-------AACCGTGACTTTGTCCTTCAATTGGGCCAAGTTTGTTCTAAAG s bosTau2.chr22 36683142 170 + 48330986 AGGGGCAAAGACGGGGGGAGGCGGGTCTCTCCAGCACAAAGAAGGGCCAGGGCAAGGGGGTGTGCTTTCTGGCTAG-TGGCCTCAGTGGCTGGGCCACTGGGCGGTGACCACAGAGCACTAAGCAAGAGCGTCCAACCGCAACT------TTCAGGAAGGTCAGGTTTGGTCTGCAG a score=5916 s mm7.chr9_random 1224249 483 + 9745104 AACAAGAAAAGAAAGAAAAAACCCTAGGGTCCTCTGTAACAGGGTACTGGAGG--GCCCGTGACTC-----ATTCAGAAATCATCCCTGTCCACCATCCAGCACAATAGCATGGCTCTGCCTGGATGGATGCTCTGCAGGATAGAAGTGTAAGCAACCCAGGCGGTACCATCTCCTTCTAGGGGGCCTGGAGGAGACAGACTTCCTTGAGGAGGAGGAAGAGGGCAGTAAGTTTGCTCACACAGCACGACAGATGATTCACGTGGACATCACTGAAGGGGAAGTCAGTGCTGAGGTGGC--------------------CAGAGCACAGATA-GCTTTAGG----ACCAAGCACATAGTGTTGAGGGGGTAGCACCCTAGGCCAGCACTCACATACTAAATGGAGTCCTGCTCAGCAAGCCACTTGAAAAGGAAGGTGGCA--------TCAGCT----GCCTGGGCTCAGCCTCAGGAGAGG---------------GCTGGTTC----AGTTAGGACCAGG--CCTCCCAAG-----------AGCATGGTCTGGGG s bosTau2.chr22 36683333 514 + 48330986 AGCAGGAAGGCAGGGTGAGGACCAT--GAACCTCCACAGTGGGGTGCCGGCTGTCACCTGGGACTCTGGGACTCCACTAAACATCCCAG-CCACTGCCCACTGCAGCCCCAGGCTTCCTCCCTGAAGGATGTTCAGCAGGACAGAAGC-------------------CCGTGTCCCTCTCAGAGGCTGCTCAGAAGTAGACTTCCTTGAGGGGGAGGGGAGGGGCAGTGATGT----------AAGGGAAAGGGGACTT---TGAAC------TAAGCAGGAGTCAGTGTTGGGGTGGCTGAGATACCCTCGGCTCCTCCAGAGCACAGGCACGCATCAGATGGTAAGGAGCAC----TGCCAAGAGGGCAGCATCTGAGGCCAGTACCCACAGGAGGCGCAGAGCCTGGCTGAGATATCCACACAGGAACAAGGACAGCAGTAGTCATCCAGCTCTACACCTGAGGGGAGCCTCCAGAAAGGACAGTCCGAGGCCATGCTGGTCCTAAAAGGAGGGACCAGGGACCCTCCAACCTGAATGGGGCAGCTCTGGCTGGGG a score=16001 s mm7.chr9_random 1224815 1469 + 9745104 CAAGGGCGACTCTTTTCACTTCGTGGTACCAAAG-------------------AACACATGGCACTGTC-AGAAGAGAAGGCCACTG----------------------------------------TGGAGTTGCAAGGAGACCAGTGTCACGTAGGACATCCTGACACCCAGCTGCTGGCCA---------------CTTCTACTCTGTGATCCGAGTTTCTTACAAAGCTACTATCACCCTCCTGATTGTTCACACA-AACA--ACCTCCCGTGTGTACCCCTAAGTCA--GCAGCAGGAGATGTTTTTGGCGCTGTATGCCTGC---------------ATTTTTAGCCATCTTCTCAGACTTAATTTCCAGTTTTATCCCGTGAAGTCTTAATG-ACTCCACCTGCCCTGACCTCTCACTCAAAGAGGCTGTGAAGAACAGGAGGCAG---------TTTCTGTCGGGCTTGAAGTGAGTTTTTCATCTTAAAACCTTGGCACACTGCTCGTGTCTCTTCAGAGAAGGCGTTCTTTCTTCTCAGGGGTTAACAGGCTTCCCAGAATGTCTGTACACTGTGCTCTGGAGTCCCACAA---CCCTAACAACAGCCACTCAGCCTCTCCCGT--GGGTGCCTCCCATCTGTGTGCCCAGGGCCTAGAGTCCGGGAAGGACTAGCAGGCAGCTTGAGCTCCACTT-CTATTGGCTGTCCTCTGCAGGCCTCCTGTAGGGCTGAGCTAGGGGCAGCTCTGC------------------CTCTCCCTGCATTTACAG-----------------------TCTTTCCTAGCAGGCTGTCCTACAGCTTCGTTAACAAAAGCCAGCACGGTAGCAATCTGTAGGGTCCCTGCCAGGCATCTAAAGCCACTGCACCAGGGAGACAGAGCATCTTCCAACACT------GCCTTGC--CCACTGCTCCCCTTGTGCCACATGTCAGCTACCCTGGAT-------------------------TGGTTCC---------------TCCAGACC-ACAGGCAGGTTGCTCTTCTGT---CAGGGCCTCCCT-----CAGATGTGATGCTCCTCTGGGCA--ACCACGGTGA-AGCTGCCACC-CTTGTTGGGGGCCATTGCTCTTACTGAAGGTTCTATGCTGTAAGT-----------TAAGCTCCCAAGAGCA--------------------GGACCCACATTTACCTCACTGAAGAGGACCACAGG--CCATAGGAAATGTTTACTCAGCAGATACCTGGAATCAGGCAAGAGCCAAGCACTCTGCAGAGATTCAAATCCCCTAACCCTTACCA-AGACA---------------------------GCAAAGGTCAGCGCCCCGACCT--CCTGTGCA------------------TCAGTCAGGGCAC--------------------------------------------------------------------------------------------------CGGAGTTTAAAGCACTAAAGGGGCCATCCCACAGGCAGCTGGGCAAAGCACAGATGGCACTG--AGGTCAAAGCCA-----------GGCTTGCAGAGAGTCCAGCTCCCAGGC-----TCT--------------AGTTCCCGCCAGGTG-AGAACAGCATGAATGGACAGTATTCCACTCAAAGCACTGTTGTGACCC-AGCCATACCAGGGCAGGCAAACTCTGGCAGGGACTTGTG-TGGTGATTTTGGAGTCTAGTGGCT-----GGGGCTTCCATAGCTTTTGATAAAGTCAGAATCCCAGGGAAGACACTGATAGTTCATTAATGTCAGCTGGAAAACAGATCCATT s bosTau2.chr22 36683993 1822 + 48330986 CGATGGGGACT----TCACCT--TGGAACCCAAGCCACACTCTCGCTTCCAGGAACGCA---CACCGTCCAGCACAGTGGGTGACTGGCTGATGGGCTTGGCCTTTGGTCAGGCGTGCAGCGCCGTCTGGACTTGCAAAGGGGC---TGAAAGGTGTGA---------GCCCGGCCGCAGGCCAAGGCAGAGAGGCTCACTTCTTC-CAGGGATGCCAGTTTCTTACGAAGTTACTATCAGACTCCTGACTGCTAACACATAACAGAACCTTCCATGTACGCCTTTAAAACACAGTGACAGGAAATGTTTTTAGTGTTATACTCCTCTGGATGCAATGAGGCTATTTTTAACCACCCTCTCAGACTTGATTTCCAATTTTATCCTATAAAGTTCTAATTCATTCCACCTCCCCTGATCTCTCACTTGACGAGGCTGTGAAGAACACGAGGCAGGCTGGGCGCTTTCTGACGGCTCTGAGGTGGGGGGTGTTTTCTAAGTCTTTG-----CTTCTC--CCCCTCTCAGCACAGGCCTTCT---CTTCCAAGGCTCA--GGGCACTCAGGGATGTCAGTATGATGTGCAC-ACAGTCTCACCATCCCCCCAGTCACTGATGCCTGACCTTTGCCCTCAAAAGTCCATCCGGCAGTGGGTCCAAGGTGTGCAAT---------ACTAGCTGGGATGCTGTGACACATGGACCACGTGATGCCATGTGGAGGAGCTCTTCAAACTTAGCCTGGAGCCAGCGGTACAGAAGAGACACCATGCCACTTCACCCCCATCTCCATCAGAGATTCAAGGGTACTCTGCCTCCTTCCTG--AGCCCTCCCTCTACCTCTG--------AGCTGGCACAGGAGA-------GGGGTCT-------ACACCCAAAGCCAAGGCGGGCAGGAGGATGAGGACCTTTAAATTCTGCGGTCGCCCAGCCACCACCACCACCTACATGCCTCATGTTGGCTGTGCTGGACTCCCCTCACTGCTTGGATGTGCTCGTGGTCCCCACCTCCACCCCTGGTCCAGGCCTGTAGGCATGCTGCTGCTCCCTGTGCAGAACTGCTCTACTCCAGGATGAGA-GACCCTCTGGGCATGCCCACGGTGCTGGCTGCCACCTCTTGTCAGGGCATTCTGCTC-CACTGAAATCTCTGCACTGCACAGACTGCTGTCCATAAGCAACCAGGTACATTTATGCGCCTGGTGGTGGTGGGGCCACATGGGTCTTGTGGATGAGGGTGGTCAGCACCGCagctaacatttattgagcagctacccaggggtaggcacaggccaaacactgcttgcagactcatcgcctttaattctgaccacaaATATGGCAGGCTCGggacttccctggtggtgcaatggctaatactccgcacttcccaatgcaggggacctgagttcaactcctgtcagggaactagatcccgcatgccacaactaaagatcctgcatgctgcaactaagacctgctgcagcaaacaaataAAACACGGCAGGCTGGTGacagataagcacacggggcttggagagccacagggg-tatctccaaggttgct---cagaggataaggagcagtgccagctcaaacccagagtgtagctgggctctcggggccttcagtctctgtgcACAGTTCTTGGCATGTCCCCGGAGTGCCCACCCAGTGAAGAGTCGAATAAAGGGACAGTGTTTCTTTCAAAGCTCTGCTGTGGCCCAAGCCAACACTGGGTGGGCACTCCCTGGCAGGATTCAGTGTTGGTGATTTTGGGGTCCAATGGCTTGGCCAGGGATTGAATGGCTCT-----GAGACAGGATCCCAGGGCAGGCACTGCCATTTCATTCATTTGGGCTGAAGAGTAAGTACACT a score=12504 s mm7.chr9_random 1437786 753 + 9745104 GTCTGACCTGAATTTAAAAACCTCGAAGTTTGTCAGT-GAAATTAAAGTTCTTGTTTAGGAAGCAGTTG-CTAACCATCTCTTGTGTTTTTTTTTCAATCTTCTATGTTTTACATTTAATTTTCCAATTTGAGATATATTTAAATGTGTCTAGTGCTCATGAAAGCTAACAGGGAAATAACTTCT-----------------------------------------------CTCCAGAGATA----------------------------------------AAGAGCGATAGAA--GGCTGCCAG---------------------------------------CAACCATGTGTTTTTCTGCTTCAGAAATTATTTATCCCTC-TGCAGTCTTCTCTGACAAAGAGGTAATTGCCTCAGTAATATAAAAGCAGATAGAAA---GCATTTGGCATGTGAATCACTGCAAAGCATTCATTCTGAGAACTGACA----------------------------CAGTGGCAGAATGG-CTGCTCTCAAATGACTCCTA-CCCAAACCAGAATGACTTGGTCCTGTGTGCCTCTAAACCGCCAGCATCCCCTTTC-TTTAACAACAGAAGTGAAACGTTAAACTCCTGTTAAACAGC--TTAACAAATCTACCACACATCTGCTAGTGGTGGTTCTAGAATGAGATA------GAAACTCTTCTC---------------------------TTTTAAGAAAAAAATTAATAGATGAAGAATACATTGTAAAGTAGTATGGAGCACAAGACTTCCAAAGCAAACAGAAAGGATGTTTAGTGGTTATCAGAATGAGGAACCACAATTGATGCAGTA-CAGGAATCAATGTTAACTTGTGTGTGAAAAATCAAATAAATTTACCAAAGTACTTTTGAATTGGTTCAACTATAGCATGT s bosTau2.chr15 1702589 936 + 53815408 GTCTGACATTGATTTAAAAACCTTAGAGCTTTTAAACAGAAGCTAGGGTGCTAGTTTGGGAAATAATTTTCTGACTATTTTTC---TTTATTTCTTACTTTTTTAAAACTTCCATCA----TTCTATTTTAAAAAGTACTTAAACTTGTATAGTACTACAGAAAGGTGAGAGAGAAATGTCTTTCTCTgctgctgctgctaagtcgcttcagtcgtgtccgactctgtgcgaccccatagacggcagcccaacaggctcccctgtccctgggattctccaggcaagaacactggagtgggttgccatttccttctccTTCTTTCTCTAGAGATAGAGATAGAAATCCAACCACATATTTTG-TGCTTCTGAAATTATTTATCCCCCCTGCAATCTTCTTTGGCAAAGATATAATTACCTCAATTAAAAAAAAAAAAGTTGAAAAAGGCATTTGGCACACAAATCTCTGCAGTGCATTCACT----GAAATGATAAGCAAAACTCCTTCTAAATAACAAATGATATTTAAAGAGTGGATTTCTTTGAAATAAATCATATCCCAAATCCAGGAGATCAGGTTATACACACTTA-AGAACACGAGCATTTCCTTTCATTTACTTGCAAAATCAAGAATTTTAGCTCCTATTAAATACCAATGAAAAAAATTGTTGCAAGTTTGCTGATAAGAATTCTAGAATATAATAAAATTAGAAGCTTTTCCCATAGTTTTTTTTttgttgttgttgttgttgttAATGGTAGATGCACAAGTAACAGGCA-GTTGGAAAGTGGGATGTGGGAAACCACTGAGCAAAATAAAATAAAAGATATTTAAAGGA---CAGAATGAGAAATTGCAAATTATACCATGGCAGAAACTAATGTCAACTTCTGTGTAAAGATTAATGTGAATTTATCAAAGTAC-TTTGAGTTAATGCAAATATAATATGT a score=3716 s mm7.chr9_random 1438870 110 + 9745104 AATTCTAACACAAGATTTACCAAA-------CCACTGCTTCCTACAAATATAAATGCTTGAAAAAGTCTTTTATAGACTTATTTCACAGCAATGATAAATTTGGGGGTGGGTTTttt s bosTau2.chr15 1703525 101 + 53815408 AATTTTAATGAAAGCTTTACCAAAAAAAAAACCATTGCTTAGTACAAAC-------TTTGAAAAAGTCTTTTGTGGACTTCTTTTATAGTAACAA---------GGGCAGATTTCTT a score=20939 s mm7.chr9_random 1439157 736 + 9745104 CAGATAGCTATGCAACTACATTATCATAGCTAAAGACAGATT-TCAGACAATGATTATACTTATCGCAGACCCTTCATAATGCCTT---TAGAAAGATGTTCCTTAGAACTGTGTCTTCGTCTGTCCTATGGTTTTCTGAAACT--------------GGGGTCAGTAGCACGGGTCAG----------GGGGTGGAGATTATTTTGAAGTTACTACAAAAGTCTTTCCAATTTTTGTAGCATAGGATGTTTTTAAATATAATAATCTGTATAGAACTGTTAGACCTAATCTGTGACCTTCATACTTCCATTTCAGTTAACATGTGTTTGTGATA--GTATTTATGATTCAGCCATGTCAAAGCTAGAAACATTTCCTTGCTCATATAGCATGTGGTGTCAAAGAAAATGCACTTCTTGATAGATGTCAGTCAGACATTGTGTATTATAA--------------------AAAATGGTGTGGAAGGTCACTGAGCATGGAAACAAATGGAGAGGTGGCCTTGAGCAGCAGCCACGAAATGTTCAGGGACTTT-CTAGTCAGCCTGCACCTGCCACAAAAGGCAATGGATGCCTTTAAAATATCAGGATACATAACACATTTCTTCCATTATCATGGAAATGGAGTTTTGTGGCAAAAAC-------------ATCTAATAAAGTTTAGACTCCCTCTTTGACTACATAACATCAATGTAGTATTACTATTATACTTTGTGAATGAATTT------TGCTAACTTTAACACTAAACATTCAAGATGCATTATTCCAAGCAGGAGTAA s bosTau2.chr15 1703665 788 + 53815408 CAGTTAGGCATGTGGCCACCTTCCATCAGAAAGTGAAATATTCTCAGCAAATGGCTATAATT--------CCCTTTATA-TGTCTAAAACATAAAAATATTATTTAGAACTCTGCCTT----TGCCATCTGGTTGATTGAATCTAAATAGATTCATCTGAAGTC-TTAGCAATGATAAGCTTCATCTGAAATTTTGGCAGTGATATGGGGTTAGAATCAAAGTCTCTACAATTTTCATGGGGTAGGA-GTTTTTTGACATCG-ACTGTGTACAGATTGGTT-GAATTAACGTATGGCCTTTATTCTGTCATTTCATTTAACGTGTGTTTGTGACACAGTATTTATGATTCAGCAATGTCAAAGCTGAAAATATTTTGTTCCTCACATACAGTACAACCTCAAATAAAGTGCACCTCTTGATGGATGCCAGTCAGACACGATGTATTTGAAAAAAAAAAAAAGCAAAAACTAAAACAGTGCAAAAGGCCACTGAGCACAGACACGAATGAAAAGGTGGTTTTGAGCAACAGCACCGAGACCTCCAGGGACTTTCCTTTTCAGCCCATACCAGTCTTAAAAGTCAACGCATGCCTTTTAAATATCATGATTCATAACACATTCTTTACACAATCATGGAAATGTGGCTGTGTGGTCAGAACAACAACAAAAGAAATCAAATGAAACTTAGATCCTGTTTATACCTTCACAAGGTAAAAGGTAAaata-ggcgatattttctgaatagatgttttaagtgccaagaactatgctaaatagtttatatgtattattccagttaaaactaa a score=20713 s mm7.chr9_random 1440928 607 + 9745104 AAGCCAAAAGCAAT-TAAACAAACAAACAATAAATAAATCCACCAATCC---CACCTGACTGTCTTTGTTGATAGACTGGACTTCTGTGCCAGACAGCTTAAGTCAGACCATTCA-CTTTTCTAGCAATGCCCTCCCTGACTCAATGATAAAAG--------ACTCGACATTCTAGATTTGTCACTGGCTATTGGTAAGACTCAAATGTAAATTGGCCC---AGAAACCCAAACAGCTCACCTTCTTATATCAT-GTTTTTTTCATAA-----------CTTCACATTATTCAAACATCAGTCAGAAAGGCATGAACAGCTGAGAGATGATGAAGCAGTGCTT-GGCAGTGAAACCTTGAGGTTATCATGGCTTATTACTTTCTACTTTTCTTCCTACAGAACCCACTGCTGCTCCCACTGACGTCACAGCAACCAGTGTGTCAGTGTCAGAGATTTTTGTTGTATGGAAACATGTTAAGGAGAGTCTTGGAAGACCACAGGGGTTTGAGGTATGAATACAATTATTGAAAATAGGCC---TTCGTTTTGCTGGCACTGTGTCCTGCTAAACAGATGATTCAATGATGTTTCAACACAATCAAATTCCTTTGAAACTCTGCTCTGTGTTAAGAAAGAAA s bosTau2.chr15 1704562 618 + 53815408 aggcaaaaaacaaccttagcaagcaaaaaa-----------gccaagcctgactcctagtcccttcttttgatc-attatgctaGTCTGGCAGACAATTTAAGTCAGATAATTTAACTTCTTCAGAAACATCCTAGTTAATCCAAGGATAAAGATCTTCTTCGCTTGTCTTGCTAGATTTAT---TTGTCATTGGTAAGGTACTGATGAGACTTGACCTCGGAGAAATCCAAAAAGATCATCTTTTTATCCTGTTGTGTTTTTCATAATCACCAGAGCCCTTCAT----TTAAAAAATCAGGGA-AAAGAAAGTAACACCTGTCATATTCAGGGGCAATGCTTTGGTAGGCGTAACTTGTTACCCCCGTGGTTTATTA-TTTCCATTTTCCTTCATACAGAACCCACTGCTGCTCCCACAGATGTCAAGGCTACAAGTGTATCTGTGTCAGAGATTCTTGTTGCATGGAAACATATTAAAGAGAGTCTAGGAAGACCACAGGGATTTGAGGTATGAACAGAATTCTTGAAAATAAGCCTTATTATTTCTGTTGCCATTGTTTTCTCCTGAAGAGATGGTTTGGTGACACTTTAACAAGATTACATTCCTTTGAAATTTTGCTCTATGGAAAATAAGAAA a score=3696 s mm7.chr9_random 1441867 124 + 9745104 TTTTAAGACAGATGTGACGCCCTTAAAATCTTAAGTATTCCAAATCAATTCAGTGACATCAATTCATCTTTAGCTTTCACATGCACAGATGGCTTGTGGGGTAACTATGACATTGAGTATTCTA s bosTau2.chr15 1705513 124 + 53815408 TTTAAACATAGTTATGCCAGCCTTATAACGGTGAACATTTTATAACAATTCATTGACTTCAGTAAAATTTTAGCCTCCACATGGACTCAAGGTCTGCGGGCAGTTTATGAACTGGAGTATGCCA a score=18623 s mm7.chr9_random 1449200 717 + 9745104 agaAAACACAAGGTAGATAAACAAGATCATACCAGAGCAAGTTCTTTGTCTTCCAGGAAAC----TTTCTTCA-AGTAAGAGACTTGAGGTCACTCTAGCAAAATCATCTCTTTCTGTGCCTTTTA----GATCCATTCATGGACATTTGTAGTCATCATGATTGGGCTAGATTAAAA---------AAAATCCACTGAGC-----TTTCAATGAGCCTCTGCAATTATACT-----AACCT--TTGCATCTCACAA----------TTAAGAAGAATCATACCCTCTAAAATCCCAAATGCACACACTA-----TCTAGT---ATTTTACAAAACCTTTACAATTGTTTGATGGTTTCATC---GAATAACTTATGTGAAAAATTTAGTTCCTTTCA----ACTTGTTTGAAATGGTATGGTTATAAAGACTAAATTTAGAAAACACGATCATAGAGATATGTTGAGATTTTCAGCTTGTGAGATGTAGTTTGATTGAGACTTGGAAATGGGCCGTATC-ACTGAACAACTCTGATTCATGAATAAGCATGATCTTCCCATCTGGACTACCATGTCTGTCTCCGGCCCATGCAAATACTTTATTAGATTCTTTCTTGAAGTTATGAATCCACCAGCATTCAAATGTCCACTGAATGGTAATCCCTGAATCCTAGAGCAGTGTCCCTCACACTTACAagagcatatcaggaatttttgagcctgcaaattcaaagcagatgtCGTCCTGGC--AGAAAAACAGAATAAGAGATCA s bosTau2.chr15 1712153 762 + 53815408 AGAAATGTCAATGCATAAAGACAGGGTCAGAATGATGACAGCCCCTAGCTCGACAGAAAATAAAATGACTTTACAGTAAAGGGCTTCAGGAAATTTTAGTAATGTCATCCCTTT---TAATTTATAAGTGGGTCCACCCATGGA-ATTTCTAAATGTCACAATTAGGCTAGATTAGAACTCTGTTACGAGTTCTAATAGGTGGTCATTTTACCTAGCTTTTAAAACTGCATTCTATAAATCTAGTATTACCTCACAAAAATTGCCATCTGAGGGAAAGAGTA-----TGAAATCACAAATACAGACACCAATCCATCTAATTATATTTTACAAA-TATTTGAACTGTTTTGTTGACATTATCTTAAAACCACCCGTTTGAGAAGTTTGATTACTTACATGGAAGTAGCTTGAAATTTCATGGCTACAGAGACTAAACGCAGAAATCGTTGACATTGAGATATGT-GAAATTTCTAGCTC-TGACATGCAGCATGATTGAAAATCAGAAGTGAGCTATATTTATGGAATGATTTTGATTTTTGAATTACCATGACTATCCCATCTGGATTGCCATCCCTGTCACTGGCCCATGCAGGTAAATTATTAGATTCAGTTTGGAATTTATGAACCCACCAGCATT-AAGTGTCCTGTGAACAGTAATTCCTGAATCCTAGAGCAGAACCTCTCAAGCTTTTCTGAGAAAATCAGTATTTTATGTGCATCCAAAATCAGAACAGATTCCAGTATAGCCAAGAAAAAAAAAGGAAAGAgtca a score=28764 s mm7.chr9_random 1450116 1265 + 9745104 CACAGTAACAATAGAATTCCCATGTCTATAATTATCCTAGGATTCTATATCATGTTAATCTTC--AAGACACAGT---AACAATAAATCCATGGCAGTGCACTCCCTACACTTACATTTCTCTATGCAGGAGCACATACTTCTGTCCCCAAAATACCCTCTGTTTTCCTAAATAAAGAAA------ATTAGT-------TTGCTTGGTAGAACAGAAAGGAGTATTGTTTCCAATACATATAATTCTTGTAAAAATTATTCTTTTTGCCTAGGGAACCAAATCTCCCATGATTGCCAAGATTAAATTATGGTATCTATTTTTACTCCTCCCAATTGTAAGAAATGTTTAACTCTGTGtatatgtatgtgtgtttgtgtatatacatatatacactatatatatatatatatatatatatatatatatatatatatagagagagagagagagagagagagagagagagaATCATTTTAATAGTAAGCAAGCAATACTGCCAGTTCTTGGTAGGGAAATGGATGCTGAGTACCTTAGTTTCAGTTCTGAA---CTTGATACTTATGA--AAGGAAAGCAGAAGATGAGGCAATCCGTCCCATTTAACACTGGTCTCTAAATCGCTGCTCCAGCAAC-CCTATCCATGGGCTTTGTGCAGCACTTATATGTGCTCACTTTTAAGCTCCCAGGGAATTTGCCACTTAGCACTTCATTTCAGACTTGTCACTAAAGCCATTTCAGCTTATTGATTGC-CTCAAAAGATACCAATTGTGTTGTGCTTTATAAAATCAGTTGTGGTAGAGATTTCTTAAGGGGAGAGGCAACCTGATTGCT------GTTTATTTTATGATCTGGACCCTAATCATTAGAGCAGAAGAT------GAAAACAAATGGACCTTGGTGCTGTCTGACAATAACT-ATGGTAGGCAGATTGCTCTCCATTTGTCTACAGGAGAGG------GAGTA-----------------AAAGTGGAGCTGCAGATATAAGCTAATGAGAAA--------------GAACCCTTTGCC-AAGGGCTAAGACAAAGGCTACTTTCCTTTTCCATA--TGGTCTTTG--------TTTTGCAGATTCTCCGT-GCTTTTTATTACAACTATGTACAAATAAGAATGCAAAAAACTAGACCATGAGAAGATGCCGATTC------TCCTTTGCTGAACTTCTGCGACCCCCAATATAAACCTAATGGTTTTCATGCCATTATTGTTAGGTTTCTTTCTTTGGGTATTTTCATAGATTGTGCAACAAAC--AAACTTTTTCTTTTC----AAAATCAGTAAAC--AAAAAGCCTT--GAAGTAATATTTCAGCCTCTT s bosTau2.chr15 1713791 1243 + 53815408 CATTGGAACAAGATAATTCTTATCTCCATAATAACCCTGGGACTCCTTAGCATCCTGATATTCTGGAGAAACATTCCTGAAAATAAACCCATGCCAATGCCCTTCATGAGC--ATGATTCTGTTTGCATGAACATATGCCTCTGTCCCTGAA-TGTCCTCAATTTTCCtaaataaaacaataaattattaataaaaattttaCTGAATA-AACTGAAAAAGGAATTTT-------AGAAATATTTTATGTA----TTATATAATTTGCCTGTGAAACATAATTCCCCATGACTATGAAG-TTAA----CGGTATTCATATTCATT-----------------------------------------GTGGCCTTTTTGAAAGATTTTTATTAACTATGTATTTTAATG------------------------------------------------------GCTGGGTTCATTTCAGCAATAAGCAA----CAATGTATTTTTATAGCAAGGAGAAAAGTACACGGTGTCCTGGTTCTGATTTCAAAGTTTTTCATCCTTACTATTAAGAAGAATGAAAGGTAAAACAGCTTGTCCCATTTTATAATTCTCACTAAAAGACACCCATAGCGACTCCTTTTCCTGGGCTATGTTCAAGACTTGCATGTATTTACTTCAGATCTTCCAAAGGATATGTAACTTAGAAGTTCATTTTAGACGTGTCACTAAAGCTATTTCCACTTATTGATTGCACTGAAAAGATGCCAATTGTGTT-TGATCTTTAAAATAAGTTGTAGTGGAGATTTCTTAAGGCGAAAAGGGATGAGATTGTTCTTGTATTTTATTTTATGTTCT-GACTCTAATCATCAGAGCAGGAGACCAGAAAAAAAAAAAATGGTCCTCACTGTTGTCTGACAATAATTCATACTAGGCAGATTGCATTTAATTGG--TATAGCAGAGGTTGCAAGGGTATGTATGTATGTGTGTGGAAAATGGAATTTCAGACATAAATTAAAGAGGAAAAGAAGCCAAAATGAAACCAGTTACCAAAAAGTAAAAACAAAGACGTGTTTTATTTTCCAAAGGTGGTGTGTAGCAGCTATTTTTGCAGATTCTCTTTAGCTTTTTGGCATTACTATATGATAATAAGAA--AAAAAAACTAAACAGTGAGAAGAAACTATTTCTACCCTTCCTTTTCTGAAATTCTGTGAACTGTGAAAAAAATCAAATAGCTTTCATGTTTCTATCATTAGATTTCTTTCTTGGGTTATTTTCAGAGACTGGGAGGCTAACTAAAACTATTTATGTTTTCCAAAAATCAGCAGATCGAAGGAAACTGAAGAAGCAACATTTCAGTTACTT a score=18439 s mm7.chr9_random 1454484 521 + 9745104 aatagaatttttctaaataaaattCAATAAAGATGGTAAAGAATGGAAGAAAGCTAATGCCTGTGC-----------TGAAATACACAGATCAGGAACAAATTCAACTTTATGTACAGTCAACCCTTCTCATTGCTTCTTAGATAGTAAAAGCAGCATTTCAAAAGGATAAACACGAATTGATTCAGAGAGCGACA-CCAT--TGGTATTCCTGTCACATTTCCAACTTCCT-ACTTCATATCCACTAATCACTATTG-----CCTCATAAATATTGAAACT-TTAACTAACCATTGTTTATTTATCTTATTTGATTCATTAAATTGTGTGCTTTATGATAATATTAC--CTGGGCACAAAGCAACT-ATTATGCATGTAATTTAATCACACTGCCTGCCAGC----------CCATCAACTGTGAAGAGCCAATTTAACAA-TATACTTAATACT-AACACAAAAGATTAGGAAGCTGGAGACAAACTAAACTGAGGCAAGCTG-GCCTTTGCCAAGTAAAACAAATCCATCTGCTGTGGTAACAATGTTCTCTTGG s bosTau2.chr15 1718730 557 + 53815408 AATATATTGTATTTTAGAACACTTGAGTAAATAAAATGAAGAAGGGAAGGGAACTAACATTTGTAAAAGACTTACAGTGAACTACACATATTAAGAACAAATTCAATTATATCTGAAACCAGTTTTTAAGTGTAATTTTTAGATAGCGGTGACAGTTTATAGAAAAAATAAATGC-AATTTATTCAGTAAATTATATCCATCCTTATGTTCCTGCTGCATTTCATACTTCCTCACCGCAGAGCCTCTAATCACTGTTGAACTATCTCATAAATATTAAAAATCTTAACTACACATTGTTTATTTATCTTATTTGATTCATTAAATTGTATCCTTTATAGTAAAATTACCTCTGGGCACAAAGCGGCTAATTGTGCATGCAATCTAATAATGCTGACTGCCAGTGTATTTCAAAGTATTGATTGTGAATAGCCAATTTAATAACTATACCTAGTGCTAAACTCAGGAGATTAGGAAACTGGAGATCAACTAAATAGAGGCAAGCAGAGACTCTTCTGACCGAAACAAATTCATTATCCCTGGGAAATGTGCTCCCTATA a score=18955 s mm7.chr9_random 1455005 633 + 9745104 TCTGAGACTCTATAGATCTAGATAGAAGGCTATACTGATGTTGAATGTTGCATAAGCCAAAGGCACATACAGAGGTAATTTCAGCACTGGTCAAGGAAAGGTTAGAGTGTTTTTAAACAGTGG---TGCAGGTGAGCAATCAATAGAT---------TGGCATAGAAATATCTGCCTTCTAACC-TCAGTTTCCGTTAATCATGACTGTTAGATTTAGCAACACTAGTGGATCATCTGGAATTATATAAACTGAGCTGTTCCTAGTTCCCCTTAAGCTGCACATGAAGTCTTGAGGAAAAAGACAACCT-CATTGCCATTGCAGCAAGCGGCATCAAGTAA-AATTGCCACAGAGCTTTGTATGTTTTCCTTTCCCTTCATCTTTGTTCAATGACCCACTCTCAAAATCCTATTTTCTGGGTCCAAGCAAGCAATGTAATAGCCTCTGGCCTCCCTCTACTTTATC-TTTGCTTCACTGAAACAAACTGCACGCAGGCACATGAAGCTTTGTGTCTCAGCTCAGACCTTTGGAGACTTTTCTTTGTTCCAGGGGGAA-AAAAGTGGGGGCTTGTGGGGCAGCCAGGCATCTGACACCAACCTGCGTAACTCACTGCAACCATCACTGCAACCAGCTCAGAGGTGCAGTCT s bosTau2.chr15 1719743 610 + 53815408 tctgAAACTCAATAGAAATACATGG---------CTGAACTTAGGTGTTACGTAAG----AGGAACATAAAAGG--AACTTAAGCATTATTTGGGAAAATAGTATAGTGTTT----AAAGTGTATCTGAAGGTGAAGAATCAGTAGAGAAAGCAGGGTAGTAATGAAGTGTCTGCCTTCTAACTGTCAGTTT-----AGTCACAATTTTTGAATTTAGGAATGGCTGTGAATTGAATGGAAACACGTAAAATCACCTTTTCTTAATCTCCCTTAAAGTAACCATGAAACCATGAGAAAAGAGAGAGCCTTCTTTGCAATCATAATGAGGAGTATGAAACAAGAATTTTAGTAGGATTTTCTAAGGTTTTCTTTCCTTTCATCTTCGTGCAATGACCCATCTTCAAAATTCCATTTTCTAGATTCAAGCAAGCAACAAAATAGCCTCTGGCCTCCTTCTCCTTTATCTTTTTCTTCAATGAAA-AAACTGTAGTCACGAACATGAAGCTTTGTCTCTCATCTCAAGCTTCTGAAAATTCTTTTGTGTTGTGTGGAGAATATGAGTGGAGGCTTGT--ATTAGCACAAAGTTTGGCCTC--------TATCTCACAGCATCAGCCACTG-----GGCTTGGATACACAGTCT a score=3375 s mm7.chr9_random 1456409 116 + 9745104 TATACTTAAACAGCATCTCAGGTTATGAAGAAAACACTTTCGAAATCAGGACCCAAATAGACAAA-TAAAATATTCATTAGAAACAGTAAGATACAAAGTTAATACTACTAAATATT s bosTau2.chr15 1720606 115 + 53815408 TATGTTAAAAGAACAATGCTGGTTATTAAAGAGAATTCAATAAAATCAAAATCAAAGTAATTAAAATAAAATATTCATTAGGAACAATCAA--GCAAATTTGATATCGCTAATTATT a score=4505 s mm7.chr9_random 1456743 294 + 9745104 TAAACTGATGCTTCACAGTAAAAACCTAAGAAGTCATCTCAGAATGCAGAGTAAAGGTGCAAGAAAGGTGTGGTTTAAAacacacacacacacacacacacacacacacacacacacacacacacacacacacaGAGAGGAGATGCCAGATGTGAAGGACAAAAGAATTTGGGTTAGTGAGCTCAG-----AGTTGCAGAGAGGCTAAAATGTTTGCAAAAGAAATACCTGAAAACGTG--AACAAGAACTCAAATCTCAAACACTAAACCACAACAACAACAAC---AACAAAATCCTTATTT s bosTau2.chr15 1720721 250 + 53815408 TAGACCAATGCTTTGGAGTACAAGCTTGAGAAGTAAACCCAGAATGCAAAGTACATGAATAAGGAAATTTTACTATAAGGTA---------------------------------------------------AGAGAGAAGAAGGCAGATGTAAAGAACAAAAGAAGTTTGGTCCATAAACCAAATAGATATCTGCCAAGAAGATAGAATAGATGGAGCAAAATCAGTGACAATAGTAACAATAAAAATCCAAAT---AAACAGCAATCCAAAAACAAAGTAACTGAAAAAATATCCCTACCT a score=15824 s mm7.chr9_random 1457696 546 + 9745104 AGGTGTTGGCTCAGGTGGACAGAATTTTTTTTTTCATGAGTTTAGCAGCACATGCATTTGTTAT--TTTACTTGAGATGTTTGATTTTATAATGATTACTCCAAATATTAAACGTACATCCAATTTTTAGAAATCCAAAATTTGTATT--------------TTTATAAATCTGCAATTTGCTTAATTTAATCATTTTA--CTATATCAAA---ACATACTTAATTATATTTAAAATAATGTAACTCATTAAGAGACATTGAGGCAGAAGTCAGGAAATCAAATGCATTACAGGAAA--AGAAAAATGAGCGTTCATCCAACTAGCAACTTTCCAGCCAACTTCATAGCTTGAAAATAACTTGGAATTTTTCTTCCGTCCAAA-TATTCTCAGAGTCCAAGAAAGACAAGTTAGTCTTCGGAATAAGGAAGAGTGGGGCCAGCAGTGTATGAAATATAGAATGGGGACTTCCTATTTTAGAAAACTACTTTTCTGAAGTTCACTCACTTGACTGTATTCTCTTCCAATTCTGTGGGAAGAT-----TGGCTAAAAAGA---TGAT----ATCATTTTACTAT s bosTau2.chr15 1725068 573 + 53815408 AGGTTTTATCTGGTACAGCTAGAATTTATATTTTTTCAAAATCTGTCACTTAAGAACATAATATCTTTTATTTAGGATGTTTAATTTCATGGTGATTCATCAGCATATTAAAC----ATTCAATATTTAGAAGTCCAGACtttgtattggaatctgtgtttgtatagaaatctgtAATCTGTTGAATTTAATCACACTAAACTCTCTCAAATATATATATTTAACTA-ACTTAAAATAATCCAGCCAATTAAAGAAAGTTGAAACAGAGATCTGAAAATCAGATACATCATTGGGAAGGAGAAAGATACACATTTGTTCATCCAACAACATGTCATTCAATTTTGTAGTCTGAAAATAGCTTAGA---TTTCTTCAGTTAAAAGTATGCTGAAAATG-AAACAAGATAAGTTAGCTCTTGGAATTAGGAATAATGGGGCAAACATAATACAGAAGTCAGGGTTAGAGCATTTCAGCTTAATCAAACAAATTTCTGAAGTTCATTCATTCAGCTGTATGCCAGTTCAAATCTGTGAAAAGACAAGGATGACAAACAGGAATTTGATTATGATTATCTTACTAT a score=41349 s mm7.chr9_random 1460876 800 + 9745104 GGGGAAATTTTAAAATTAATTTGTCTTGTTATAATGTGTTGACAGATTAGTTACTGGAAAGATACCGAGCCAGAAGACTCCGTAGAAACAGTCCGAACCAGAGGGAATGAGTCATTCGTCATGTTGACGGGATTGGAAGGCAACACACTCTATCACCTCACAGTCAGGGCTTACAATGGAGCCGGCTATGGGCCACCCAGCAGGGAAGCAAGCACCACCACAAAGAGGCACCGTAAGTGACCTGGGA-TTGTGTTTGTTT---------GAAAGCC--------ACATGATCAGAAGCCATGCAAGGTGCATAATAAGCAGA---GAAGGG--------------AGCCTTGTTTCAGAGCTCAGATCTGAATTCCAAAACCAGCTCAAAATTTTTTCGCATTCCCAGTCTGTAAAGGTTATCATCCTGTGAAACAAGGCTAAGCGA-TTTTGACACAGAAGGGAGATAAAAGGATTCAAGTTCAAAAGCTCAGTGGAGTAGCTATTAAAAATGACACTCCTGGAGCAAAACCCTCCTCCTCTGATTCCAGCTGGAGGGAAGCCTATGGAGCCAGCCAACTACCAGGCAC-GTGGAAGGCAGGAATCCTC---AGGACTGATAGGAAGAAAGGCTTTTCGGCTAATGGT-----TCACTTTGGTGTGTTTATCTTGCAGCCCCTAGGGAGCCACCTGGCAACCTCCGGTGGGAGCAGCAGGGCTCCCAAGTTTCCCTAGGCTGGGAGCCAGTCAGACCCCTAGCCAATGAGTCTGAAGTCATGGGTTACAAGGTTAGTGTCTCTTCATTC--TTGGAACAACACATATCTC-AGAATTGTGGCTGTGA s bosTau2.chr15 1727995 844 + 53815408 GGGGAAACTTTAAAATTAATCCGTTGTGTGATAATTTGTTGACAGATTGGTTATCGGAAAGACATGGAACAAGAAGATGCAGCAGAAACCGTCAAAACGAGGGGGAACGAGTCATCCATCATCCTGACAGGGTTAGAAGGAAATACATTATATCACTTCACAGTGAGGGCTTATAATGGAGCCGGATATGGGCCACCCAGCAGTGAAGTGAGTGCAGCCACCAAGAAATCCCGTAAGTGACCTGGGCTTTGTGTTTGTCTCAGACAAAAGAGAAACATCTTTTAACATTTCTGAAAGCCACATGAGGTACATAATAAAATGAGTTGAAGAGGAGTTTTGATTCCTAGTCTCGCTTCAATGCTTAGATCTGAATTCTAAAACTAGCTCAGAAAATTTT-GCATTCACAGTAGATAAAGGTTATCTTCCTGTGCAACAAGGCTAAGCGATTTTTGACACAGAAGGGAGATAAAAGGATTTGGGTTCAAAAGCTCAGCAGAGTAGCTATT-AAAGTGATACTCCTGGAGCAAAACCCTCCTTATCTGATTCTCACTGGAAGGAAGCCTATGGTGCCAGCCAACTACTAAACACAAAAAAAGATTGAAATACTCACAAGAATTTAAGTGAATAAAGGTATTTAAGATATCTCTTGCACTCACTTT--TCTTTTCATTTTGCAGCCCCCAGTCAAGCACCTAACAACCTCAGGTGGGAGCAACAGGGCTCTCAGCTTTCCCTGGGCTGGGACCCTGTCAGACCATTAGCCAACGAGTCTGAAGTCATGGGCTACAAGGTCAGTGTGTGTTCACTCTGTTTGATAGACATGCATCTCAAAAATTGCTATTGTGA a score=14901 s mm7.chr9_random 1462477 1186 + 9745104 ATTGTATTGTGTCTGTCTAAGAATGAATGCTTGCCTGTGGTGTGGGAGGCAA--CAGTCAAACTCAGTTCCAAAACCACAAAGGCATCTGAAAGAAAAGAGTAGAATAAAACAACA---------------------GGATCCTGAATTCA--GTCTGAATGCACACAGCCCTGTAGCAACTGGAGGACCCTGGAAT-------------GTAAACTTTGTTGGCAGATGACAAAACCTGGACCCCTAAAACTGAACAGGATGATTTTCTGTTAAAAACAAAAATAAAACAGAAGAGTAAAGTACTAGGGCAAGCACATTAAATAGGAAGGATTCCA--TAGAGACACATTGGGCTACAAAA-AGAC---ACATTTCAT---GGGTATCTTGCCTTGGATTTATAGGCAGTCAGGTGTGAAAATCTCTACACTACCTGACAAACAACTTTG-------TTTAAAAATATATATGACCTATGGGTTGATGGGTCCTAATTTCTTACTTCTGTTTCATATCATCAGAGTTTAAAATTGAATTCTGTGCAGAATTACCAGTTGAATATTATTTATGATAG-GTTTGAAATTTCTTTCATGTCAATATTTAGGCTAACAACCATTATGATTTTGGTT-TTCAACCA---AAAATACTGGTA---TATTTTGTGCATAAAGTAGTAGAAGTCTTAAACTTACAACAGACACAGTTACAAATAGAATATATATCCA---TATATATTCATGAATGAGTATGTGTAAACCCATTTTCTACTAATACATAAAGCAACTTACAGTGTTTCTTA---ACTGAAATTAATATTGATCACAGATAAACTCACACTGAAACAGATACACATACTCAGCTCTGACTCTAATCCTCAGACATATACAATTTCATCTTTTCAGGAG-GTGGTTGGATCAT--TTTCTGGATCCTTCCATAAGCTCTCCTATTTTCACATCTTTCACTAAGAGACCTCATCCTTTGAACTCACCCTTCAAACCATGTATACTCT-TAATAATAAGGGGAAAGTATTTTAAGACTACTGGCAGACCATTAAAGAACAAATCTAACAGCATAAGAAATA-GACAAACAACCTTGCAAATTAGAAAAGCAATGTAGAATGCTTGAAAACACATGATGCAAACACAAAATTCATGTGACTACCTAGAAGG-----TTGGTATCTTAAGCGCTCCTC--CAGAGAGCCTGAGTTCTAAATGG-CTAAAGAAACTATGTTGAACTGGGTGTACAACTCCC s bosTau2.chr15 1728901 1177 + 53815408 ATTGTTCTACCTATATTCTAGAA--ACTGCCTTCATACACTGGGGAAGTCAAGGCAATCAAAATCAGTTTCAGCTACACAA-GGCATAGGAAACAAATGGGTAGAA-AAGACAACAATTTGAACACAGGGTGAAGATGGTTCCATGATGCACTGTCAGGATAGGCATAACTTTG------ACAGAGAGTCTTGGCATTCTCTCCCCAAAGACAAACTGTCCTGGCAGATGGAAAAGACTGGACCACTTAGTTTGAGTAGAAAGACTTTCCATT---AGCAAAGAAACACAAAAAGAAAAAAATGCTAGGGTCAGCACAGGGGATATGAGAGAGACCAGGGAGAGAGACAGCTGGCTCCAAAATAGATGCAACATTTCACATAAGTCATCCTGCTATGTGCCAGCAAG-----AGATGTGAAAATATAAAAATGTTTAG---AACAACTTTGTCTCTGATTTTAAGTAATATGTGATCTAGGTATTGAATTAGCTGAACTTCAAATTCTTCTTCCATAATATTGGATTCTATTTCTTAAACTCATACAGAATCATTAA-TGGTTATTATTTATAACAGAATTTTTAAATATTTCAATGATTATCTTTAGACTGAAAAGCATTATTTAGGTGGCTGTTCAATTATCTGAGATGGTAATACAGTATTTGATGTACAAAGGGCTA-AATTCTGAAGCTAAAATCTGGAATAGGTATAAATGAAATACATTTTTAAGTTAAATAATTCCCAAGAAGAATA---------------TATTCAGGTACAAAG-----TATAGTACTTCTTACAGACTAGAATTATTATGGATCATAAACACCCTCACACTAA-------ACACTCTCTCAAATCTGTC-CTAATCTTCAGGGACATTGAATTTGATCTTTGGGGGAGAACAGGTGAGCCATTCTCTCTGTATCCTTCCCT-AGTCCTCTTCTTTCCACACTCTTC--------CCCTCGTCTTCACACCTTGTAGTCTAAGGCAAGTAGATCCTCCAATGATTAAGGGTAACAATATGGTCATAAATGGCGA-----TGGATCACCAACCTGATCTCATTAAAAGTGTGGCAAGCAGTCTCTCAAACTGGAGAG----------------GAAAATAGATGGT----AGATGAAA-GCATATGACTGCCTGGAAGAGCCATTTGG--CTTTGGGCAACTCTCAGCGAAGAAAAGAAGCACCACACAACCTGGAGAAAACATG--AAGCTGGGCATAGGGCTCCC a score=10568 s mm7.chr9_random 1466149 1012 + 9745104 TTTATTTTGTTGCATGCAAGCTAGTTCAAAATTAAAACATGTTTTCTATATG--AACTTGAGTGTTTGTGTGTGT-GTTTGCATATGTGTGTGATTTATCTTGCTTCAAGAACATGACATTTAAACAATGTTCCATAGCAGTCAACAATGGTGGTGATAGAGGTGAGTTTCTCTTACTATCTTGTGTGATCAGGTCCCATGCTTGATTTTTGTCATATGCTTTTGCCCTT------TTTGCTCTTCTGAGAAAATTATGAAATAGTAGGTATTATTTCTACAAACAAAGGGTGGATTTGGGTTGGGATAGGTCAGTAATTTACCCAGTCAGGTAGAT-TGGGGTATTGCTTTA-GTTTGGTTTCAGAGAAGATTGTTTTGAATCCATATTTGCATAATGACAAAACCACTGCTATTCCCATTAGTCAAGGCAATCACAACACCAATAATTATGAAAATGCATACAAACAATGGGAATGAATAAAAATGCATTAGTGTATCTTAAGTGCTGCTGTTTGGTGATTATACCCTTCCCACCATAATAGACTATTATTGGAGGCAAAAGCATAAGAGCAAAGCATA------TTAAACACTTCTAAAATAACCAATGAA---CCAACCACCTAAGGAAATTCCCATCCTAGTTAGCCACAACCTCTATGAAGGATCTCACTGCCTCTGTTGCCTCAGTTATGTGAA------AAACAGGACAATATTGTGTCCAGATTTGTGTTTCT--------GTTCTCTATCCAAGTGTTTTGAATTGTGAAATTATGGACACATGTCGAAA-----TTAAC----------CCTGTCAT----------------------CCAAATGCAA----------TTTAATCAGTATACAA--------ACCTC---TGCtaaaattaaaa------------aaataaataaaataaaa----taaaaataaaaaaaaaGAGTAAGCCGGGCGTGGTGGCGCACGGAGAAACCCTGTCTCaaaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGA---GTAAAATCTTGACTCTTATGGTCATTTCCTACATTG--AGCATTTTATT--TTAAATGTTTAGCAACTGTCTCCTTAT s bosTau2.chr15 1741797 1045 + 53815408 TTTTTTTTCTTGTATGTAGGTTAGTC--AAGTTCAAGCACATTTTTAATAAGCAAAATCTATTATAATTTTTTCTAGTTTTCCAATGCAGTTAATCTTTTATG---------------ATGTAAATACTGACCACTGACAATGAACAATAATAGCAACAGAAG-AAGTTACTTT--CTCTTTAAGCTTACCAGATCCTGTGCTGGACATTT-TTATATGTGTTTTTCTTTACAGTATATGCACTT----GAAATTTAAAAA--------TGTTATC-----------------AACTTG-------------CCCAAATTTTCTCAGACTGAAATATGTAGGAAATTGCTTTTTGTTTTATTTTGTAGGAGACTGTtttgaatacaggtctgtatgactacaaaatcattgttctcttcattacaAAAAGAAATTATAATACTCACAATTATGAAAAACCACAAAAACAATGAAACTAAATAAAAATGCATTTAAA-ATCTTCATTGCTGCTACTTGACTATTATGCAC------ACACAAATAAGTTTACTGGGGGGCAAATGAGTAGAAACA--GTATGATACAGTGAAACACCTCTGAACTGATCATCAGATTACTAATCTTCTAATGCAATTACTTTCACAACTGAACATATAATCTTGTATAAATTGTGTAATCTCTACAACCTTAGTTTACTGACCTCTACACACAAGCTAATTCTGTGTCCTAATCTGTAGTTCTAAAACTCTGTTTACCATCAATATATGTGTAATTCTAGTACCATGAACAAATGTCAAAAAAGCCCTAACTTGggacttccctgttatacagtggctaagactccatggtcccaatgcaggggacctaagttcaattccttttcaagaaactagatcccacatgccacaactaagagtGAGAGCAGCCaaataaattaagtaaatattttttaaaaGAGAAAAAAGCCTTAACTTGGC-------TATCCAATATATCCAAATGTCAATTCACCAAAAAGTAAATACGAAAGTAAAACTAAAAATACTCTTTTATTTTTAACTTTT-CAGCCATTTTATACAGTGTTAAGGTTTTATTATTGATATATTTAACAA--GTTTTCTGAT a score=17484 s mm7.chr9_random 1467320 866 + 9745104 TTTAATGAGAAGGCTTCGGCTTTTATTCATGACTTCTAACTACCTACTTCTCTAA--TCTAGTTCTCCTGTTTCTCATGTGTCCTATCCATTTCATGAATGCCATGGCTTCTTATTTAAGAGGGTATTTTTTTCCTTATTTTCAATCATCTCTTATATCTGGAAATCTTCATCTGGTAAATTCTGTATGTATTTGTAGATATTTTAGTTAttgttattttactgagttgctgtagatcaggatggccttgaactaaggacaatctttctgccatgctcactcaaatactaggattactgatgtgaaccaccatgtct--gCTTTCAATTTATCTTCAAACACTGAGCTTAGGCACTTCAACTTCTTCCCTTGAATATACACAGGTAAT---ACTCTCTTTCTGCATT-ACCTGTGCCCTTACGTATACTTCTGGCTCAGTATGTTATACCTGCAGCACATTTGCTC----ATGTGTCAAAGCAGTGGAGTGTGG-TACCTAACTCGGAGTGTAATGTATAGTAGTCAGTGAAGAAATATTTACAATGCGCAACTGAATAACAAATAATTCACGCCTCTGTTATTGCTCACAGGTTTTTTATAGGCAAGAGGGTCACAGCGAAGGTCAAGTTATTGAGACACAGAAACCTCAAGCTGTAGTGCCTCTACCTGAGGCTGGAGTCTACATTATTGAAGTTCGAGCGTACAGTGAGGGAGGAGATGGAACAGCTAGCTCCCAAATCAGGGTTCCTTCATATTCAGGTAAG-TTCGACAGAGCAGGCTCGCTTTAGGAGACGTCACTGATGCTGG-GGGTCCTAAATCTTTTTGATATTGAA-----GGATGGCAGAATTCAAAAAATTTTTAGG-----TATTTTTCTTCTTTGA s bosTau2.chr15 1742926 748 + 53815408 TTCAATGA-------------------TCTGCCCCCTTACTGCCTACTTCTCTAGCTTCAATTTCTCACTATTCTCAACTGTCTTCT----------AATGCTATTGCTTTCTTATTACTTAGATGTTTTTTTC----------ATCTTCTCTTATCTCTGCAAAATTT-----------TTCTGCTCTCCTTCTCCCATTTGTGAGCTCTACTTATCTT-------------------------------------------------------------TAAATATTTAGCTCA-------GCACCACCTTCTCTTAGGTGGCAGTTTAGTT-----------GCTTAGGAGC--------CTTCCCTAAACCAC-CAGAGGGGATTAAACTCTCTT-CTGCATTCATATCGCCCCTTGCATACACTTCCATTGCTGCATATAACATATACATTGCATTGGCTTGCATATCTGCCTAAGCTGTAAGCTCCCTCTACTTAGCTCAGAATGCAATATGCAGGAGGCAGTCAATAAGCTTTTGGAATCCTTGATTGACTATCAAATGATTAAAAA-TCTATCATCATTTCCAGGTTTTTTATAGGCAAGAGGGTCACAGCAACGGTCAAGTTATTGAAACGCAGAAACCTCAAGCAGTAGTCCCACTCCCCGATGCTGGAGTCTATATCATTGAAGTGCGAGCATATGGTGAAGGAGGAGATGGAACTGCTAGTTCCCAAATCAGGGTCCCATCATATTCAGGTAAGTTTTGACACAGTAGGCTTAATT--GGATA-ACCACTAACATTAACATGATGTAAAACTCATCAAAATTAACATAATGGATTACATGGTTCAGAGACTTTGAAGGTTCTCTACTCTTATCCTCTGA a score=6111 s mm7.chr9_random 1470885 577 + 9745104 CAATTGCTAAACTTCAGTAAAATAGAATCTCATCATTTTATCTAACTTAGCCACATAAAACCCAACTGAGGCATGGTTTCATTCT---ATATTGTCAAAAAC--AAATGCTTTAGAAGTTGAAAAGCCTTGCCCAGGTGAAACAGATGGATGGCTTCCAGTCAG------------GATGCA----TCTTAATGCTCATTGCTGCTGGCTT----------------ATGGTTGGCTTTCACCTTATTTATTTGGA---TGTGCTAAGACAACATATCTAA-----------TTAGTAGACTTTACT----CAGCATCATTAATGCTGACTTCACAAG---------ACCATCATGGAAACTGGA----------CATG--TTTTATTTATTTCAGCCCATGC-CACTCTAGCCAGG-TCTGTCATCGAACTTACTTTTCTTATTATGACTCATATGTGGTCATGCATTGTACAATCAATGTATTTTACACAGGATGAAGT-------------------------------------TACTGTCGCATCAGTGTTACAAATTGACAAAGATATAAAGAGTAACCATTCTGCATGCATGCATGGATGTTTGCATATATGGTTTAGCAGCAAAACTATTCTTTTGCTCTGAAATATG--TGGGGAATACATTTAAACTCTTTGCCTCTAACGAAA s bosTau2.chr15 1747824 656 + 53815408 CATTTCCTGAGCTTTAATAATGTTCAGTCTCCTGGT---------ATTAGACCCATAAAACAGGAGCAACAATAGGTTTCATTCTTATCTCTTTTCTAAAACCTAAaagcctaagaagct-aaatgacctgctcaagtgaaatagttag----tttcatatctgagactagaaATTGATTCAATGTTTTTTTTTTTCTTTGCTTGTGTTTTGCTATGCTGAAATAGCATGGTTTTCTTTCATGGATTCTATGTGGAATTTGAGATA-TACACCCTACTTAACATTCTGAAAGTGAGGAGGTTTTTTTGTACAAGTGTCATGTAAGTTGATTTAACAAGCATGCAGCCACTCTCATATAAATAGAAAGAATGCTTTCATAGTTTTTATTTATTATG---CATGCACACTCCAGTGAGGCTTTGCCATCAAACCT-------TTCTTATAGCTCACATGTGGCCATGCACTTCACAATGACCCCATTTTGTACAAGTTGAAATATATGTAACGTTCTCCAATATGTTGAATAATAGATTTTATTAGCACCTTAGCTGTAAAAATTTTCAAAGGAAAGAAGATT-----TGCTGCTT-------TGGGTATATGCATGTGTGGTTTACAAAACAAAGGTTTCTTCAGTTCTTAAATATGTCTGGAAAATAAACTGAGAGTCTAT-CCTGTAAGAAAA a score=3900 s mm7.chr9_random 1473690 153 + 9745104 TTACCAAGCACATGGCAACAGAGCTCACAGTGAG-----TCACAGAAATTTGAAAAGATGCCTTGT-TTGTAGTGTCAGGGTTGCCTTTTACAA-CATAATTTTATACATTTCTTTT--ACTTTAGCTTTGAAATTAAATTATAGCAGTCTTC------TGCATTCCC s bosTau2.chr15 1695904 168 + 53815408 TTGTTATGCACATGGCCCAAAAGGTCACCGTGAGATGAATTGTAGAGGTTTATGAACATGATATGCATGGTAACACCAGTGCTGGCTTTAAAAAATCCAAATTTATACATTCCTTGTCAACATTTGCTTTGAAATTAAATTATAGTAGCCACCATGGGTTGTTTACCC a score=6778 s mm7.chr9_random 1474031 230 + 9745104 TGTGTCTTTAAACTTGAAATTGCTTGACTTTGGCACTTTTTCTTTCAAGTCAGATAAAACATTCATACTTCCTTTCAAAGACACTGAGGTTATTCCTATAAAATATTTCACTGTTATACTTTATTTAAC-------AATGAAACTATGAAAGATGCCAG------TTGTTCAGTATGAACAAGCTAACTTTCCTCTGATTGCAA-------------GTTCTGAATTTTATCATGAATTAAATTTACAAAATTGGA s bosTau2.chr15 1696072 251 + 53815408 TGTTTCCTTAAACTTGAAATGGTTTGCCTTTAGAGATTCCTCTTTCTAGCTAGATAGAAAAT--ATGCACATTTTCAAAGACACTGAAGCTGTGGCTGTAACATATTTCATAGTAACACTTCATTTATTTTGGTTGACTGAAA-TGTGAAAGATATAAGGAAAATTAAATCAGGAT--AGAGTCTGCCTTTGTTCTGACAACAAAATTAAAACATATATTTAGTGTTTGCTCACTAATTAAATTTACTAACTTGGA a score=5730 s mm7.chr9_random 1474702 254 + 9745104 atctaaagcaaaaCTACTTATCCATATGTGGGTGTGTACATTCCTCTAATGCTTtttgtttgtttgtttgtttgtttTCTTTCAAGAAAGTCTACAGGAGTACAAATGAGTATTATGTCATTGAAATCAAAGTTTCACCTATATTTGACCCATTA--AAAGGAATCA-CTTTTACTGACTT---TACCTA---AATTACTTGAGGGTTGAATTGACTCTCACACTTTGGAGATTAACTGTTTCTCTCAAGTACAATCAGGGAT s bosTau2.chr15 1697595 244 + 53815408 ATTCACAGCCAGAACACACTTCCATAAGTGCTTGTGTGCATTTGCCATGTGCTTCATCTTT---------TTCCTTTCCTCTCAAGAAA-CCTATAGGAATGTGAGTGAGGCATACATTCCTGAAGACAAAAC----ACTGTATGTGATCTGTTATAGAAGGAATCATCCTTTATACACATAGATACTTAGTAAATCACTTAGG-----AAATGACTCTCACCACTCGAAGATTGACTATTGCCCTAAAGTACTGTCAGAAAT a score=4765 s mm7.chr9_random 1474957 229 + 9745104 TTCCAGTTAACACCTTTGAGCCTTTGGGACCTTTCAGTATTTTCGTAGTGGAAGTAGC-----AAGGTTCTGATAGTGCTAAATGGCCACTGACGTGAGCCT---GGAGATCAATTTGCCTGCCAAGATTTCCACAGGGATCTTTTATATAAATCACTCTTC--CAACATTGAAACCAAGGAAGAATGGTGTATCCT-TAACCCTGCTTCTACTATTGATCTTTAAGATATGATGCAATC s bosTau2.chr15 1698086 237 + 53815408 TTCCTGTTAACACCCTTGAGACGCTGAACTCTTTCAAGGTTTACACAATGGAAGTAACCCTGAATGACTCTTTCAGTGACAGGCAGAACCCGATATAAAGCCAGAGGAAAGAGGTTTGCCTGCTAGGACTTCCAC--GCGTTGTGGACATGTATCAATTATCTATATCCTTTGAACCAAGCAAAAGTTATGTGCATTCCAACCCTGATTTGACTTCAGGTC-TCAGGGTATGGTATAATC a score=31139 s mm7.chr9_random 1475592 793 + 9745104 AAAGGCTTAGTAAAACTGTCTTTAAAGTGATTTCTGTTCAAGATAA------AAATACACATTTTTTTTTGTAATTTGAGAAATATTTCATAATACAACACAAATCTATTTGTTCTTAGCTGCTCATTACTCAAAGTCTGGGTAAGAAGAGACTGAGCATCCAATTAGATCCATTAGGAAA------AGAAATTCATTCCATGGTCTTTAATCACAGATTAAAACATTTATTT-----TAATGTTATTAAGTTTTTTCTAGTATTT-----GGGGCTTTTGCCTCTTCAGGTG----AATTTCATGGCTCTTG-TTTTTATTAAAGTCCAGAATTCTCTCATCACCTGAAAAAACTGATTTGCAGTTATCC-CTTAAAAACAGAGCAACCAAGGCTCAAATGAAAGCCCAGTGCTCACAAGGTGCCATTCTCCAGATCAGCTCTTAGCTGAAACTGAGCTCAATGGGATTTATGTAAAGTCAGAAATTAATAAATTGGCATATTAGTTATAAAATGCAAGGAATAACTACCTGACTGTGCTGGGTGATCCATTTGGATTAGTGACTATAAATGTTCAACGGCAGCTGTCTTCAAACTGAATTTTAACTAATGAAACCATAACCCTTCTTCCACCAAGTTTATTAGAGTCCCCTTTGATTAATGCTGCCA-CTAACCTTCCTGGGAAGTCAGATGTACAATCAATATATTACAAGCACATCCTCCCAAATCACTAGGAGGACTCCAGCTGCTGGCTCACTTAACACACATATATCATCTAAATTTATATTCATGATAATTCTGTTCCA-AATTTTAATCTAACT s bosTau2.chr15 1698589 805 + 53815408 AAGTGCATAGTACAAATG-ATAAAAAGCAATTTTTTTCCAACATGAGAAATCAAATCAGCCTTAATTTCTGCATTTCTAGAAATGCCTTTTAATTAAAGTTATATCTGTTTTCCACTTATTTCTTGTTACTATAGCTTTGGA----AAGAAACTGAGAATTCAAT-ACATCTGATAGAAAATTAGAGGGAACTTTAATATAGA----TTAATTGTAAGTTTAAAAGTTTATTTATACATAATGTGTGTTAGCCTTTTCTAGTTTTTTTGGGGGGGTGTCTTTTTCCTTATATGGAAAAAATGTGTGGCTTTTACTTTTTATTAAAGTC-AGAAGCTTCTTCTAGCTTGCAGAAAATGATATGCAATTATCCTCTTGCAAATTGAGCTACCACAGCTGAAATTAAAACCTGACTTTCATGGGGTGTTATTCTGCAGATCAGTCCTGAGCTGAAACTGAGCTCAGTGGGATTTATGTGAACTTGAAAATTAATAAATTGGCATATTAGTTGTAAAATACAAGGAATAATTTCCTGACTTTGCCAGATGATCCATTTGGATTAGTGCCTATAAAAGTTCAACTACAGCTGTCTTC--ACTCAATTT---ATAATGAGGCCATAGCCCTTCTCCCAAGGAGTTTATTAAACTGTCCTTTGATTAATGGTGTTGCCCACCCCTCCTGGGAAGTCAAATATATAATCA--ATATTACAAGCCCATCCCCCCATATTACTTGGAGAACTCAAGCTGCTAGGCCACTTAACACAAATGTATCATCTAAATTCATGAACATGATAATGCTGTACAATATTTTTAATATAATT a score=5486 s mm7.chr9_random 1631614 229 + 9745104 CCTTCCCAGGGCAG---TCTCCACAAAGAAAGGGACCTGAGTTATTGCTAAACCTGCTGGGCTTGTTTCTGACTACAAATCCCTACCACTTCCACCTTTTCTGGCTGGCTGTGTTGTCC-AGTTGGATCTATAAAGGAACGCAAGGTCTTCTTTCCTCAGGGAGCAAGTGGGGAGTTCATCTAGCAGG---CAGCGGGCAAGCAT----------CGGAAGAGCAGGCGGGCC-TCAGGAGCACGCC s bosTau2.chr22 10680244 232 + 48330986 CCTCTTCAGGGCAGAAACTTCCAGAAGGAAATGAATCTCATTTATTGCCAAACCTGTTGGGTTTGGGT--------AAATCTCCACAACTTCCACC----CAAACCTGTTGTATTATCCGAATTGGACCTATAAAGTAATACAAA---TCCTCTCTTGGGGTTGTAACCAGATAGCCCGTTCATTAGGGCCCTGGGTGCATTCCTTGTCATCCCACGGGGGAGGGGGAGAGCCTTTAGGAGCAAGCC a score=10846 s mm7.chr9_random 1635545 440 + 9745104 GTAACCGTGGTGTATAAAGATATACTGTGATT--GTTTCCCAAGCCCCAAAGCCCGTTCTTAATAACTAGAAAAAACCATTTTGGAAATAGACACATTATCATATT---TATTTGCTTTGATTTTTCTA-------CCTGTAACAAGAGAGAAGGGCACGATGTATGAGCTGAAGATAATCCCCACATAAATTAGAATGTGGTATTTTCGGGGACTGATGTA-AACATGGCCCTGAAGGCAGGCTTTTATGTT-TCGGCTAGGATACTGGCATA-TGCATTCTTATTATTGCTAAGGAtactactggctgccattggaagccatgtgctgaaaga-----aatgaatttaaatcatactttaaagaaaattttatttcccatcttattaccactaagtacATATGTGATTTACATGTCAATACTGTCAATACCGCTTGCTACTGTAAATTCTTCTGATTT s bosTau2.chr22 10687799 440 + 48330986 GTAGTTCTGGCATATAAAAATATACTGTCATTATGTTTTCCAAGCCCCAAACTATCTGCTTACTAACTATAAAACTGTACTT-GGGAATACCCACCTTACCTTATTATTTGTGTTCTTGGATTTTCCTAAAGGCGCCCT----CAAGAATGAAGGAAAAGATGCACCAAATGTAGGTGTTTCCAAAGTAAATTTAAAC-TGTGCTTTTGAGGAACTAATGCCCAATGTGGCCTGGCAGGTAGGCTTTTCTGTTAATAGCTAAAATGTTGGTGCAGTACGTTC-TGTGATTGT---GTATGCCGTTTACTTCCATTTGAAGCC--GTTCCAAAGTGTACTTGATGCATTTAAATAGTACTTTAAAGAAAAATACATTTCCAGTCTCATAACTACTAAGGATAAA--------ATGTATTTGTTCCATCAGTATCCTTTGTTACTTTAAATTCGACTTATtt a score=4855 s mm7.chr9_random 1636632 130 + 9745104 TAGGTCCTTCTATTATGCAGACACTTTATAGAATACTTTCACTAGTATATAAGAAATTC-TTAGTCACAGTCATAGATATAGCAGGA-TCACTGCAAACGGCATGCTGTTCTAAAAAGAAGTGATACCgcca s bosTau2.chr22 10688486 132 + 48330986 TAGGTCCTTCTACTGTATAGATACCTTGTAGAATAATGTTATTTGAATATAAAAAATCCAATAGGCCTCATCATATTTATGGCAGGATTTCCCCCAAAATACGTGGTGTTTCAAAAAGAAATGATCTAgtca a score=9310 s mm7.chr9_random 1639235 453 + 9745104 aaggcaaccctgaattTCAGGCTCTTTTTGTGTCTTTCACTTATGAGATGTCATTTAAGAG--TTATACTGCTTCCATGAGTTTGAGGGCAAAAGTGGTCATAGCAACATTTCCTTAAACTGTTAGAAGATGCCTATTACACAA-GGAAATACTCCTGAATGTTCTTTTCTGTCAGTGAGGGACCTTATTTTGTTGCTAGCAGATCTAAGACTTCTTATTTGGGAATAATTCCAGCGTGGGTATATGTTTATAAATCCAAACCG----TGCCACACAGAAGTGAATGGCACCATATTA--GAGTGAACTGTGCCACTGC-CATCTTTTTTCCCCAAAGGTCTGAGGATTTTTCATAAA---------AATTACTCTAGTTCCACAAAGCACCATGGTTATGTTTTAAAGATCAAGTT-----------------CACCATTCACACGGCATAAGTAATTTCCCATTTCCAGCATACGGTATCACGGTAA s bosTau2.chr22 10689584 474 + 48330986 AAGGAAGAACTAATTTTCA--TTTCTGTCATTTCTTTAATTGATAGaatattatataataaatttttattGCTGTAATAATTTGGGGAAGGAAA----------CAGACTTTTCTTGAACAGCTCTAAGACTCAAATTACCCAGTGAAAATGTTCCTGAGTATTCCTCATTATCAGAGGGAAACCTTAGTCCATTTTTAGTGGCCCTCAAATTTATGTTTTGGGAATAACTTCAGCATGGGAATAAATGTATACATCAAAACTATTTCTACTACTCTGA--TAAATAAAAGCAAACTACTGAATTAAAACTGAATCTTCACATGCTTTTCCCCAAGCAGTCTACATTTTTTTCATAAAGGATTAAATAGTTATTAAAATTTCATAAAGCATCATTTTTATTTTTTCAAGATCAAAATATATCATTCTACAGTCACAGCTCTCATACACTATAAATAATTTTATGTTTCCAGC-TGTGATATTACTGAAA a score=2234 s mm7.chr9_random 1639715 112 + 9745104 CAGCTCTCTTCAGGAAAGTGAGGCCAGGTCCTTGCAGGCTCTGAGACACTCCTGGGCTTTGAGTCAGGACCACTTCCTCGCTGGTTCCCTGCTTACAGTAAACCCATCACTC s bosTau2.chr22 10691083 107 + 48330986 CAGCCAACGTTAAAAATGTGGGATCGCGCCTGTGC-----TTGAAACACTCCCTGGCTTTTGGGCACGTTCATGTCCTTTGTTTTCCTCTGCTTGGGATATGGTTATAACTC a score=12381 s mm7.chr9_random 1640890 369 + 9745104 ggctTACTGAAGATCAAGGTTGTCCAGCACAACTTCTGAAGGTTGTATTAGCACTAGGGTACACAAAGAAGCTTCAAGATAATTTGTTCTTGGAACAAGTGTATTATAGATGTATTCACTTAATACCAAGAGTTAATAAGCCAGCTCTAATGG-GTAATTATTGAAAACCTTCAGTCCAAATCTCTTTCTTAACCCACTGCCATTTCCAAGACTATTAAAAACT-TAGTCTCCAC-ATAGCAGATAATTACACGTGCTTGTCTGGCTTAGGAAATAAGTAATCTTTACAGATAGTTTCTCCCCTAAAGATCCATGTGACTACTGAACCTATTCCCCCCCTCTCC-------GTGACAATAAATAGCATAAGGTATATGA s bosTau2.chr22 10691633 364 + 48330986 GGCATGTTTAAAAGCAAGATTGCCCAGCACAATTTTTGAAAGTTTTGTGGGCATTTGGATACATGGAGAAGGTTAAATATAATTAATTCCTGGAACAAGTATGCTATCTATAGAGTAGTTTAATATC-AGAGTTAATAAACCAAAGCCAATGGAGTCATTATTTGAAATCTT-----------TCCTTTTTCACGCATTGCTATTCCCAGAAGTTTTTAAAACTGCAGTCCTAACAACAGCAGGTAATTATATATGC-TGTCTGGCTTAAAGAGTAAATTAATTTTGCATGTAATT--CCCCCCAGAAATCTATATGACAGAGAATTCTGTTTTATACTTTTTTTTTCATAATGGCAATAAATAGCACAAGATAACTGA a score=2555 s mm7.chr9_random 1641296 63 + 9745104 CTTAGATATTTCCAGGGCAAAAAGCAAGGATTTTTCTA--------TAGAACCTGTGAACTAGTTTATATA s bosTau2.chr22 10692653 71 + 48330986 CTTATATATTCCCAGTTGAAAAAGCAAACATTTTTCCAGAGGGACTTAGAACCTATAAAGTAAATTTTCTA a score=13459 s mm7.chr9_random 1693533 614 + 9745104 TGGTGTTTCTGGAACCCTTGACACACACCTGTGCCACTGACTGCCAATATGCAAATTGCTTAAAAACT----TTGGCTGGTCTAGACCAAAAAAGCCCATCTGTTGGGTTCA--ACACTGTCTCTCTTGGATTCTCAGTTGGGGTTATGTCCTGGAGATGCTCAGATGGGTGATTCAGGCCCAG-GTCTAGTCCTACTCACCTCT--GGAGATTTTAACGTCTGCTTTCTTTTATTGACTTTAATCATTTGACATAATTTTTCC----CTCTCaataataaaaattttaagattaaaatttGAATAGACTGTAAACCTTTTT---------------------TTTTTTTTACATGCAAAAAAAAAATAGACTAGGAAAATCCCTCTGCTGGAAAAATTATTATGTTCATGTGGAGTTTTCTATCCAGTGTGAGAGACTGAGG-----AGGACAGCGAGCATGATTTCAGACTAACTGGTTCTTTGCTAATGTTGCTGATGCTGTTGGGAAACTGTCGGA-----AGCCATAGGA---TATTTTAATATATCTGATTATTATGGATGTCAAATAAAAACAACTTTATAA-----------TTTCTTCTGAGAAAGAGAAAGAGAGAGAATACTTATATTTTAGATATTGGTAAAGAAATTCTTAGTTTCCTT s bosTau2.chr22 46291586 651 - 48330986 TGGCTGCTCTCAAGTCCTTGACACACACCTGTGTCAGTGACAGCTAGTATGCAAAT-----ACAAGCTCCATTAGGCTGATCTATGGAAGGGAAGCCCATCTGTCAGTTCTGTGACACTTTCCCTCTTGTATCCTCACGTGGGAATATGTCCTTGAGACACCCAGATGGATAAATCTGTGCTAGTGTCTGGAATCACCAACCTTGGAGGAAGTTGTCACTTCTACTTTTTTAAATGGACTTCAAT-ATTTTATCTCATCTTCCTTCTGCTCCTAAAGCATAAAATTTTACGACTAAAATTTTAATGGATGTTAAAGTTTTCTATTCTAAATAAAAGGGACACATTATTTTTTCATGCATAGAAGAAGGAAA--ATGATGAGCCCTCTGTTTGGGGAATCATCAC-TGGATGT----TTTCCAATACTGTGTGTG-GTCTGATATTCACAGGAGAGAACACACAATTTCACATTAGCTGGAGCTTGTCAGTTGCTGCTGATAGCATTTGGAAGTTTTGGAACAGACAGTGATGTGACATTATTTCAGGAGACCTGCCTATTGAAGACATTGATTTGAAATGGCTTCATGATTCCTATCCCCTTTCCTCTTA-AGAAAAAAAAAAAAAGCACAATTACA----AGCTCTTGGGAAAGAAGGTCC--ACTTCCTT a score=4585 s mm7.chr9_random 1694481 329 + 9745104 TCTTGTAGGTGTTATGAGCCTACTGAAGCTTCTGCTCCAGCTCACATTGAAAACCACAGACACCAGTTAGGAGTGA-------------ATTGGAACAGCCATGTCTTTGATAATTGACAT-TAGCCATCATGAATAGACCTCTTCTCTGTTCCTCCTAGGCTGAGGGGCCGTGCATGTTCCACCCCTAT---------------GAAAAAGTG-----AAAGGACAAGTTGTC-CACCTGAAGGAGGACGTTAGAGGTCAAGATACAGCTTCTAGAAATAATATATAATACATTGCAATCTAGGCTCAGAAAGAGAGAGGACTGCTTC---------AATACAAAGTTCT---TCAGGTTGTGTTtggagagatg s bosTau2.chr22 46292238 351 - 48330986 TTTTGATGGTTTTATGAGCAGACTCAAGTCTCTTTCCCAGCTCAAGTTAAATCCCA-AGAGAAAAGTTAGAAGTGGCAACAGCAGATTCAGTAAAGCTGCCATAACTTTGATCACTGATATCTGTTCATTATAATCAG----CTTCATTTATCCATCTGGTCTA------CCAGAATGATCCATTCCTATTTCTTTCTAAATGGAGGTAGATTGCCACAAAAGTAATAATTGCCTCACCATACTGGGAAGG-----------AAAATAGTTTGTAGA---AATGTACAGCAAATTATAATCTGGAATCAGAAAGGTAAAAAGTTTCTTCTTTTTGAAAACTTCACAGTTCTGTGTCAGGTGATGTATGCAGACATG a score=13908 s mm7.chr9_random 1695243 555 + 9745104 TTTTCATTCTCTAAGAACTAGTTCAAACAACCGACGGGGATGTTTGACAGGACTTTTGAGGTAGTTACTGTTTGCTAATACTATTGTTTTAGAAGTTGGAACAGAGCCCCTTGCCagagagagagagagacacagagagagagaagagagagagagagaAACTTCCAGGCCCAGCAGGGTTTGGATGAGCAAGAGAATTGCAGCTTTGTCCACAGCAGATGTCCTG-AGTGTGCTCTGGCCGTCTCCCCTGTTTAGCGTGCATATAATTTCCCCCAGCGATGTTGATGGCTGTTCATTACGGATGCG---TTTGTTCTAGTGAAGTCGGCATCTTTTCTACCATTGCTTAGAAGGAACAACTG-ATTGGGTTGGTGTTTAATCTTCTGA-CACTCATCCACATCCAATAGGAAGTGGGGGGAGGTGTATATGACTTCCCCAGTCAGTCTAAGGAGGTGACAGTTGGGGAGACATTA-CTGTGAAAATGGCCACAATGCTTTTTGCTCAAAACCATTTTAA----CTCATTTAAAGCAAGATTTAAACATTTAAAC-------TTAATAGGTAA s bosTau2.chr22 46292672 535 - 48330986 TTTCCATGTTTCAGGAAATGGTCCAAAAGATGGACTGTTGTTATTGACAAGACTTCCAAACTAGTTATTATTCACTAATAGCGTTGGTT-AAAAGTCTGAGCAGAGCCTCTTGCCAGAGAGAGAGTAA-------------------------------AACTTTGATGCCCAACGGTGTTTGGATGAACAAGATAATTATACCCTTGTCCATAGCAGATGCTCTGTCCTTCACTTTGGCAGT-TTCCCTGTTCAGTGTGCAAATAATTTTCTCCACTGAAGTTGGTGGCTATTTGTGACAAATATAATTTCTTTTCCAGCAAAGAATGGCTCTTTTCCATCATCACTCACAAATAGCAACTGAATTGAGTT----TTTATTATTTTAAGCATACACGCAAATCTGATATGAAGTAGAAAGATATATGTGCACATTCCATATACA-TCCAAGAATGTGATACTAAGAAAGAAATTATTTACCAAACTAGTTGGGAAACTACATTGTAACATTTATTTCAATATTCTTATTAAAGTCAGAATTTTAAAAAATAAGTCTCAGTGTTGATAGGCAA a score=21951 s mm7.chr9_random 1899340 511 + 9745104 gGATTTGA-GTCTCATTGCTTGGAAGTGTCCATGACCCCAGCCTGACCTGGGCAGTC--TCTGGGATAAGG----CAGAGCTCCACTCTCCTTAGGAAGGGTAATGCAGCCACTTCATTATTGGCTTAATATATCCTTTGATGGGT-TGGACCTGCTGGGCTGGCCTGGAGTATTAGCTGGGTTAATTGGCCCTTCAAATGAACAACCAGTTTAATCAAGGAGGTAATGCCTTCAGCTATTCAATTATGCCTACCTCTGGACATGCGGCTTCCGTCCCTGCCCCAG----CTCCCTGGGAGCAGGGTAAGGGAGAGTGAAATTGGCCAGCGTGTGTGCACACTGGAGTGCCTGTACACAGTCATTGCTCATAGGAGGTGTATGCTAAGAGCAAGCTGGGGACCCAGAGCTGAGACTGTCACACAGCATCCGACCTTGACTGTTGGCTG-GGTGGCCTTATCAGTCAGCTGTGACCAGCTCTGCTCTGGAGAGTTT----GCAAATACTCATTTGCAAATGAGGTGTGT s bosTau2.scaffold1476 59670 504 - 238849 GGACTTGGCATCTCCTTGATTTGTAGGGTCCATGGCCCCCGCCTGACA-GGGCAGTGGGCCTTGGGTAAGGACCCCAGAGCCCTACTTCTCATA---AAGGTGATACAGACACTTTATTATCTGCTCAATATGTCCTTTGATGGGGACGGACCTGCTGGGCTGGCCTGGAATATTAGCTGGGTTAATTGTCCCTTCAAATGAACAACCAGTTTAATCAAGGACTTAATGCCCTCAGCCATTCAATTATGCCTGCCTTTGGACATGCGA-TTCCATTACCACCTCGGAGCCTTCCCTG----------CAGGAAGAATGAGATTGGCCCgtgtgtgtgtgt----gtgtgtgtgtgtgtgGTCATTGCCCAC---AGGCATTTGTTAAGAGCAAACTGTGGGCTCCGAGCCCAAGCTGGCAGGCAACATCTGACCTTGGCTGTTGGCTGCAACGGCTTCATCAAGTA-CCCTGCCCTGCTCTGCTCAAGAGGATTTTGTCACCACCTCTCACCT-CAAATGCTGTGTGT a score=34765 s mm7.chr9_random 1950948 969 + 9745104 AAATTATGTTATCTTACAGACAATTTTCCAGAGGGCTTTCTTGATGTCCCTGTTCCTCAGGCTGTAAATGAAGGGGTTCATCATAGGAACCACCATTGTATACATTACCGAAGCTACCATACTTTCCCTGGAAGAACCAGAAACTGTGGAACTGAGGTAAACTCCTATACCTGTTCCATAAAATAGGCAAACAACTGACAGGTGAGATCCACAGGTAGAGAAGGCTTTATATTTCCCTAACAGTGATGGAACTCTAAAAATAGAAGAAGTAATTTTATAGTAGGAGTAAAATATTCCTGAGGCAGGGAGGAAT-----CCAACAATGATGCTTGAAAGAAACATGGCTATGTCATTGATAGTAGTGTTAGAACAAGCAAGTTTTACAAGTTCTGGAACATCACAGAAGAAATGAGGGATTTCTATATTAGTACAAAATGTTAGTTGTGACACCATAAAGCAGTGCACCTGTGAATCAATGAGACTGATACAAAATGACATTACAACCAAATATCTACACCGACAAGGATTCAGAATGACTTGGTAGTGTAGAGGGTGACAAATGGCCACCCATCGGTCATATGCCATCACTGCCAGTAGAAAGCTGTCCATACACCCAAAAAGAATAAAGAAAGATACCTGAGTTAGGCATTCAGCATATGTTGTGGATCTCTTATGTGCATGCAAGTTTATCAGCATTTTGGGGATTGTGGTGCTGCTAAAGCCCATGTCAGACAATGAAAGGTTGTAGAGGAAGAAGTACATTGGGCTGTGGAGGTGGGAATCACAGCTGATGGCCAAGATGATGAGAACATTTCCAAGCATAGTGAGCAGGTATATGAGCAGGAATAGTGCAAATAAGATGAGCTGCAGTTCAGGGTCCTCTGAGAGTCCAAGGAGAATGAATTCCAAGGTTCCTGTTAAATTATATGGTTCCATA-AGGCTA-GGACAT---CTTTTGAAAAGAAAAAAAAAAAG s bosTau2.chr2 86479478 974 + 86543008 AGAGTATGTTCCTCTAGTGAAAAGTCTCCTTAGAGCCCCCTTCATGTCCCTGTTCCTCAGACTGTAGATGAAGGGGTTCAGCATGGGGGTGACTATTGTGTACATCACCGAGGCTATTGAACCCTTTCTGGAGGGGTGGGCTGTTCCTGAAGTGAGGTAGACCCCAAGGCCTGCGCCATAGAACAAGGAGACAACTGAGAGGTGAGACCCACAGGTGGAAAAGGCTTTATACTTCCCCCCAGAAGATGACATGCCCATTATGGAGAAGATAATTCTAGAATAAGAGAAAAGGATCCC--AGTCAGG--GGAATAATACCCAGCAA-GCCAGTTACAAAATACAGCACAATGTCATTGACAAGGGTGTCAGAGCAGGCAAGCTTGAGAATTTGAGCAAGTTCACAGAAGAAGTGGGGGATTTCTGTCTCTTTGCAGAAAGATACCCTCAAAACCATCAAACTTTGCAACAAAGAATATGTCAGGCAGATCAGCCAAGAAAGCAGAAGCAGGAGACCACAAAGGTGAGGGTTCATGATGACTGTGTAGTGCAGCGGGTGACAGATGGCCACGAACCGGTCATAGGCCATCACTGTCAGTAGCAAATTATCTAGCCCAGCAAAGGTCATGAAAAAATACATCTGGGTAAGGCATCCTTCATACGTGATGCCTTTGTTCTGCTTCTGGATATTTACTAACATCTTGGGGACTATGGTGGAGGTGAAACAGATGTCAGTGAAGGACAGGTTGGAGAGGAAGAAGTACATGGGGGTGTGGAGGTTGGACTCAGAGATGTTGGCCAGGATGATGAGCAGGTTCCCTGTAACACAGACCAGGTACATGGACAGGAACAGTCCAATGAGGAGGGGCTGAAGGTCCGCATCATCCGAGAGCCCCAGAAGGATGAATTTTGAAATAACTGTCTGATTCTCTGTTTCCATATAAGTTACGGAAATTGCCTTATGGAAAGAGGCAAGAATAG a score=1375 s mm7.chr9_random 1951938 81 + 9745104 GTATAGATATAAATGTCTACATGCCTATATGTTTGTAAACCAGCAATTCA--------CAAGACACCATTCATACATGAGAACTGTTCA s bosTau2.chr7 32696591 80 + 69141744 GCACAGACATAAGTGTCCAGA---------GTTTGGATTTGAACAATTCAAAATTCAGAAATAAAGTATGCATGCTTGAGGACCATACA a score=2512 s mm7.chr9_random 1955044 363 + 9745104 TTAATGTGATTTATAGAGAATCATGTTTTCCATATGAAATATCAGATAAAATTTCTA-TTTTTATTCCGTTAATATCTATAAGAAGAAATTAGGTTTTATTCATTCAACAGTCATGTACTTGAGTTTCTGATTTTATGCTATGAAGATGCATGTTTTTCAGTATTCTACATGTA-TTTTACATGCCATTTCAGGTTCTACCTTTATTTTCAATTATATATGTCTAAATTGTAGGCAGTGACTTATTTTTTCGTTCAtttttgtgattataatataactatatcatttctaccttgtctttgctctctcca-aaccttccatatacacctcatttctctctttcaagtttattgcctccttttttta s bosTau2.chr5 25714734 278 + 76426644 TCACTGTGATTTTTAGGAAGTCATTATGTTCATATTAAATATC---------TCCTACTTTTCATCCTGTT------------TTGGAATTAGGATATAT--------AGGACAGATCTTTCACTTTCAGATTTT----TATAGACA-GTGTGTTT----GTTCTCAACATTCAGTTCTGCCTGTCACTCT--------TCTTCATTTTC--------------------------------TCTTATTCCATTCCCTTTTATA--CACACTCTCA-------ATTTCTCCCCTCTTTTTGTCTTTCCCATGGTTTTCCACTTACTTC-CATTTCTCACTCTCTTCTCCTTTCTCTCCCTTTCTCA a score=20403 s mm7.chr9_random 2170810 569 + 9745104 GAATTTAGACATGAAAGCAGATTCT---ACCTACACCAATACTGATGCATTCAGTTGGTTGAAAACATTTTGCTTAGTTTTTTTT----CTAGTTGTGCACTCAATTTTAACAGAAAAAGTATAAATAAATATTTCATATGGATTGGGAGAAAACTT-------------AAAATTTT-----TTTCCATGAAGTC----TTTGAAGAACTACTTCACGCAGAAAGCCAAAGTACACATA-TGTTCTCTAGCCACCATATAAATCTCATTGATGAAAAACAAGGTTTCTTTAAAAGAATAAGGAAATATAAAGCGGCTTGTTTCCACAATCCCAGCAAACCTTTCATCACTGCTTCTAACAAGTTCCAAAATGAATTTCATCTCTATCCTCCC-----CTTGCCCTCAGCAGGAGGTTTTAATGAGC-----ACTGGTTCTCAGAGTGAGAGTTAAAGGAAGGAAAGTCCTGAATAATCCATCCCTCACATTATATTATATCCAAGAGTCAA--ATGCTGAGAGCAGCCATGGCTGTCCAGCACCTCT-CCCTGTCAGAGGAGGCCA---GACACTGGGAATGGGTCAGAAGTAACTGGAGAATAAATAGCTTAA s bosTau2.scaffold907 319 603 - 319478 GAATTTTAACATGAACATAGATTCTGCTACTTGTGTGAATACTGATGTGTTCTGTTAGTTTAAAAAATTTAATCTAGTTTTTTTTGGTTTTGGTTACGTAATAAATCTTAAGAGGAAAACTATAACTTAATATTTGATATGAAATGGGAAAAAAAATTTTTAAGTGGGGGAAAATTTTGATTTTTTTCTTCAAGTCCTTCTTTGAAGAACTCCTTTATCCTGAAAGTCAAAACACCTGAAGCACTTTCTAGTCACCAAATAAATCTCATTGATGGAAAACAAGTTTTCTGTGACAGAA-AAAAACATATAAAAAGATT----------GTTCCACCAGGCCTTTCACCAGTGCCTCTAACAAGTTCCAAAATGAATTTCAACTCCATCCCCTCACTTGTTTGCTCTCTGCAGGAGCTTTT-ATGAGCAATGAATTGGTTCTCATGGTGAAACTCAAAGGTAGACAAATCCTGAATAATCTACCATCTGCATTATTCCATATTCAGTAATCAAGGATATTGAGAGTAGCATTAGTTCTATGACACCACTGCCTTATTAAAAGAATCCATTTAACTTTGGGAAAATTTCATAATAAGGAAAAGAACATCTAATTCAA a score=6429 s mm7.chr9_random 2171774 286 + 9745104 TTTTTCTCCCAGAATTTTATTTATGAAACTATTTTCTATTTCTCCTCATTTTTTTTAAAATCTGATCATAAACTCGTTGAGGGT-GACATTATGTTATTAACCTCTGTATCTTACCAGTGTTCCGCATA--------TGAAGAATTTTATTGGAACTGTTGACTCCATTGTCTATTGATCCAATTTTATTATTTAATGAGTTAAGTTATAAGTTAATACTTTAAAATATTCTTATATCTTGACCAAATGTCTTATTTAGAGAA-TAATTCTTCCCTTTTC---CCCTCTGCCCTTCACT s bosTau2.chr11 17344949 261 + 87172399 tttccttccaagaagt----------aagcatcttttatttcCCTTC--------------CAGATAGTAAATTCGTTAAGAATAGGTATTCTGTTAATAAATTTTGCATCATACCAATGTTTTGCACAAACAAGTGTTCAGTAGCTTGTTAAAACTATTGGATTGATTGCCTCTTGGTTCCATTCTATTATCTAATTAATTAAGTTATAGCTTAAAACTTT--------------TCTAAAATGACTGTCATTTCTATGGAAGTAATGCTGCCCCTCCCCGACCCCCTGGCCCATTCT a score=4817 s mm7.chr9_random 2172156 236 + 9745104 TCATGCTCCCTAATTTCAACGTTAACAGTGATGACTCTCTACAGTAGAATGATGAGAGATGAAGGGGTGATAGAATCTGTTT--CCTGCTCAGTAGTTGCTTAT-GTCTCTGAACCCACAGGATGTTTTGCTTCCCAGTATCTAAAAAAAAAAAAATATGTGAACAAAGTTAATTCTTTTGTTCT-GAGCAGTACTATAGCAATAGAAAGGTTCTCTAATTCTGGGCCTCAATTCTGAAG s bosTau2.chr11 17345343 227 + 87172399 TTACTTTCTCTAATTTCAGGGATAGCAATGAAAACCAAATGTC-CAGAACAATGAGAGCTGTGAGAACTGTAGAATCTCTTCTATCAGCTCAACAATTACTCAGAGTC----ATCCCACATGTTCTGTACCCTCCCAGGGTCTGGGCAAAGG-------GTGAATAAA-TTGCTTCCTTTAATCTAGATAAATATCACATCAATGGGAAAATTCTTTCATTTTGTGTCTTAATTCAGAAG a score=19493 s mm7.chr9_random 2172965 1191 + 9745104 AGGTAAAGATGCAAAATGTATGCTCCACTCTCTTC---------------------------------ATTTTTCGTTACAAACTAGAATAAAAAGACT---GAGATTTGGATACCCCTAATTAGAAGTGGTTTCAGA------------ATCTTGAAATG-------CTTATGCTTATGGTATCTATCATTAGAGTTTCTATTTAAAAATATGCAACAAAGCTACAGCAAAAATAGAGAAAAGAAATACAACTATGAGTTAACATTACAAACTTGAACCTTGGCTTTGAAACTCACTTCTTTGGGTAGCTCTACGA-GAAACCAATGGTGGATTCAGAGGGAAAGCTTCTTAGGGGAGGGTGTTAGCTGTGGTTTGACTGTAGACACAGACCTCCTTTATAGAGCTTG-GATGTGTCACCATCATGAATCTGCTTTGTTTGAACCTAAACATCCAGTAGGTTTGCTTTGGTACCAGTAGTGACAGACAGCGTACCAGTGATGTGGGATGTCGTGGAGGATTAAGTAGCAAGGTCTGAGATCTCCCAGCCCTGCCTGTTGAAGAACCACAGCCTGGTGGATGATGCGGGTAGAAAGCAAGT-TGGCAGGAACTCTCAGGAAATGGAATGCAAGCCGATTAGGAGCAGGCTACCAGGAACAGTAGCCTCTTGAACTTTGGAGGA---CCAAATAGTGTTGGCTTAGATCAACAGCCTTTTAAAGCCTGGATAATAGCAAC---AACATACAG-TAATCTGTGCTCATCTTACATTTTTTTAGGGATGGCAACTCTTCAAAAG---AAGGAAAAATATTTTTTTATTT----------TTCAAAAAGTTCTTCAGGCTTGATGAAATGAAATTTTAGAATGAGGCAAATATTCAACACTCAAATATTAAATTTAGTAATATAATTCAAATTGTGTTAAGTATATACATTGATGGCAT----GGAAAAATGCATGGGGTATATATCAAGACTATCTGAGCTAGGAGACCatattttatttattt-----atatcttatcatttttaaaaaaGTTATCTCTATTGAACAAGGAACCTTTTATGAAGCTTGAGCAAAGA----AAATACTTAGACTAGTCTATAAATCACAAATGCATAGATAACCCTTACT----TAACACTGTATTATTCTTTC--TTGAGATTTATTGTTTTGGAGGCATAAATTATTAGAGACttaaataataaaaagataaaaatgaaactttctaattttatttaaacttatttaaaaatatttgttttacttttaa s bosTau2.chr11 17350488 1131 + 87172399 AGATAAAGATGCAGCATTTATGCTCTCCTCCCTTTTTTTCCCACAGGGAAGAGAGGTGTTAATGTTTTATTTTTCTTAAAAAACAAAAAAAGTAAAGCTCATGAGATTCTGACA-----GTTTCGAAGTTGTTTCTGATTTCTTGATACTGTTTTGAAAGGAAATACATTTGAGTTTATTTTAGTTGAAATT-GTTTTTTTATTTCAAGATATGTAATATGAACACTGCAAGAAATGAAGAAATTAAGTCACATATTA---------ACAAAAACAAACCTT-------------------TTGTGTAAATCTAAGAAGAGGTTATCAGTTTACTAAGGGGGAGATCTC------------TCCCAGCCATGTTTTTAAC--------------CCTGTATAGACCTTGTAAAATGTCACCATCACAAATATAGTTTGTTTGAACCCAGGCATC--------------TGGGAACA----TGGCAGACAAATGGCCAA-GATGTCTGCCCTCATGGAGGATTAAGCTGGTTGGTCTGAGGACTCCCTGCCCAACACA--GCAGAGTCAGAGCCTGGGTCATCACAGGGATGGGAGGCAGGTCTGGCAGGGCAGGCTTGGAAATGAAGTGGATACCCATTATGGGCAGGCTACCAAGAA-GGTAGCATCT--GACATTAGAAGAGAATTATATATTTTTGTCTGAGATCAACAGTATTTTAAAGTTTGGACAATA-CAACCAGAATATACTGCTAAGCTAAATTTGTTTTACATTTTC--AGTTCTGGCAACTCTTCAAGAACAAAAGGTAATTTTCTTTTTCATTTCTTTTTGAATTTTGAAAAGTTCTCTACTGTTTAAAGATTGAAATCTCAGAATATAACAT-TATT------TCAAATATCAAATTT-------TAATTTGAATGTCATTAACTATATACATT--TAGCCTCATTAAAAAAATGCATAGGCCATGCATGAAAATTATCTGGGCT-GGATGGCAAATTTGATTAATTTCCTTGGTACTTTATTCTTCT------AATTATCTTTATTAGAAGTGTAGTCTTTT-TTAAGTTTGAAAAAAGAGGGAAAGTACCAAGA---------AAATATGAAATGTGCAAGTATACTTTACTCTTTTTACATTTTTTTAATGTTTTGATTGAGATTTAAGGT---AAAGAAATAAATTATCAGAGAT------------AAAATAAATGT-----TCTCTAATTTC---------TATTTAAAG--------TATATTTTTAA a score=12290 s mm7.chr9_random 2174353 510 + 9745104 AAATAAGGATGGCATTTCTTGAGATATGAGCAATAGGTCATATTTATGCCTACTCCTTAGAAATATCATAAATGTGA-----TTATATTTTAAAATG--AATAGGAATT----ATTAAGTAAATTTATAAATTTACTTTTAGGATGAATGAAGACAGAGTAAATTATT-TGTGTTAGTGCTAAGAATTCCATGTTGTGGAAAGGATCTAAAGTAATAACAGTCTA-TAATAAAACAAATACAAGGATGAGAATGGTAAAGATATCAGTTGAGGATTGTAACAAAA-----TTCTTCC--CAGTGTTTCTTTATCTAGGTCATAGGGAATCAAAATATTGCTTCTTAAAGTGGAAACTTGAGTAT--TTTAATT--TTGGTGTGTTGGGTTTAATTCAGGGAGCC----------------------------CCATGTACTAAAG--TAAACAATTTACTTTAGTAGTTTCATAGAAATACTATCTGCACTTCCATCAACAGGACACAGTTGGGCAGAACCGAGGC-AGAATATATGCAGTACGAAGATGCTCAGAAAACAACGT s bosTau2.chr11 17351659 540 + 87172399 AAATATGGTTGCATTTTC--------------------CATGTTTATGCCTCTTCCTTGGGCAGGACCTAA-TGTGAGAGTTTTAGATTTCAAAAAGTCCACAGAAGCTGAACAATCAGTAAACTTTTAAGGATATTTATAGTTTAAATGAAAATAAAGT----TATTGTATGTTTGTAATAAGGATTTCATGTTGTAAAAGGGGTCCAAAGTAATAATTCTCTAATACCAAAATAAATATTAACCTAGGAATGGTGGACGTGCTGGTTGAGATTTGTAAGAAAACTTCTTTCTTCCATTGTTGTTTCTTTATCTAGGTCATGGTGAATCTAAATATTTCTTCTAAGGCTGGAGACTCACATATTGTTTGATTTCTTGGTGTACTGAACCAAAGTCATGGACCCAGGATAAGGAAGAGAATGAATTTAGAGACGAAGTAAGGAAGGACAAACAATACATGTTAATAGTTTCATAAGAATACGTCTCATACCTACACTGGCCCAATATATTATGATAGAACCCAAGCAAGACCATTTGGAATAAAAAGTTTCTCAAAAACCACTGT a score=22625 s mm7.chr9_random 2346200 816 + 9745104 ATCCAGA-TTTCAGACCATAATAATCACCCTTTACCTGTGCACATATTTGATCACAATGTTGGAAAATATTATAACATTCTTGGCCTTTATCTCTGACTTTCAC-TGCTCAATCCTAGTTACTACTCTGTCTCTTATGTGTCTTTTAATGCTATTTGTTTATGCAGTAACTCTGTCCTCATGGTGCTGCTGAACATACAAACTGAGCATCAATAGCATTGTTTGCACAGACTGCCACAGCATGATCTACTTTGT--TGTCATTTGTACAAGGACAGAAGTTTTTACCTTGGTGTCATGGCCTACAATCACAATGTGGCCATTTGTCACCTTGTCAGATACCTGGTCCTTATGAATCTCTACTACAATATTATTCTGGTATTATTCACTCTGTGCACTAGGGTTGTTAATAGCTTGCTACGTAATCTATTAGTGTTTTGGTTGTACTTCTGGACAG-CCTAGAAAACATTCATTTCTTTTTTGAACTTGTTCAAGTCCTCAAGCTGGCATGTTCTGATACCTTCATTGATAGCATCCTGGCAATCATTTCAAATTCTATAT----TAACATTCTAC-------AATTGTTTTCTCTTCTATATTGCATTGTGGATACAATGTTGACAGTGCTAGCATAAGAAAAAGGATACCAAGAATTTTCCA--TATGGACATCATTTTCCAGTTGTTTATTTGTGATATGTGATAGGGTAGGTTATATACATTAACTCAGAAATAATTGATTTGCCCAGGAAGATTGAAATTGCTTTGGTCATATATTCTAAGGATCCTATGATGATAAACCACTTCATCTACAATTT-AGGTACAAGAATAT s bosTau2.chr7 32688048 832 + 69141744 ACCCAGAATTGAAGACCATCTTCTTCAACCTCTTCCTGTCCATGTACCTGGTCACTGTCCTGGGAAATCTGCTCATCGTCCTGGCTGTCATCTCTGACTCCCACCTCCACACCCCCATGTACTACTTCCTCTCCCATCTGTCCTTTACAGACATCTGTTTAAGCACAACCATGATCCCAAAGATCCTAGTGAACATCCAAGCACAGAGTCAG-AGCATCACTTACACAGGCTGCATCACCCAGATCTGCTTTGCCCTGACTTTTGTTTTGTGGGAAAATTTTCT-CCTTTTAGTAATGGCCTATGACCGCTATGTGGCTATTTGTCACCCACTGAGGTACACAGTCATCATGAACCCTTGCCTCTGTGTTCAGCTGATTCTACTCTCTTTGTTCACCAGCACTGCAGACGCCCTGCTCCATGGTCTGATGGTGTTACGACTGTCCTTTTGCACAGACCTGGAAATCCCCCTCTTCTTCTGTGAAGTTGTTCAGGTCATCAAACTCGCATGTTCTGACACCCTCATCAATAACATCCTGATATATTTAGCAGCTGGTGTATTTGGTGGCATTCCTCTTTTTGGAATCATTTTCTCTTATAT-TCAAATTGTTTCTTCCATTCTGAGAATGCCATCATCAAGCAGAAAGTATAAAGCTTTTTCCACTTGTGGGTCTCACCTCTCAGTCGTGTCCTTGTTCTATGGGACAGCTTTTGGGGTGTATATTAGTTCTGCAGTTACTGAATCTTCTAGGAAGATTGCAGTGGCTTCCATGATGTACACTGTGGTCACTCCCGTGATGAACCCCTTCATCTACAGCCTGAGGAACAAAGACAT a score=37173 s mm7.chr9_random 2371467 911 + 9745104 TCAAAGGGAAGTTGTTATTCTAGAGATGAGTTTCTTGAAAGCGTTGACCATGTCTTTATTCCTCAAGCTGTATATAAAGGGATTCATCGTGGGAGTGACTACTGTGTACATTACAGAGGCTATTGCACTCATTCTGGAGCTATGAGTGCCAGCAGAACTTAAATAAACACCAAAACCTGTCCCATAGAACAAGATAACCACTACTAAATGTGATACACATGTGGAGAATACTTTGTATTTTCCTGCAGCTGATGGAATTTTCAAAACAGATGAGATAATTTTGGTATAAGAGTAAATTATACCAGACAGTGGAAGAATACCAAACAGGCTTGTCACCAAATACACCAGAATATTATTGATAAGAATATTGGAACATGCAAGCTTGAGAATATGAGCCAGTTCACAAAAAAAGTGAGGAATTTCCAACTTTGTGCAGAATGACAGACGCAGTGCCATCAAAGTGTGGAGCAGTGCATCTAGGATACTTAGCAAGAAGGACAACAAAACCATCACCCCACAGAGTTTGGGATTCATGATGACTGTGTACCTCAGTGGATGACAGATAGCCACAAACCTGTCATAGGCCATCATTACCAGAATTTCATTTTCCAATCCTGCAAAAGCTAGAACAAAGCAGATTTGAGTGAGGCAGCCTGTATAACTGATTGAGTTGACCTGAGCCTGTATGTTCACCAGCATTTTTGGGATGGTGGTGGTGGTGAAACATATGTCAATGAAAGAGAGGTTGGAAATGAAGAAATACCTTGGGGTATGGAGATTCGAATCAAAAATTGTGGCCAGTATTATGAGAAGGTTTCC----AAACAGTGTGATCAGATATATGGTCAGGAAGACTCCAAATAAGACAGGCTGTAGTTCTTGGTTATCTGATAGTCCCATGAGATGGAATTCTG s bosTau2.chr2 86479472 911 + 86543008 tCACTGAGAGTATGTTCCTCTAGTGAAAAGTCTCCTTAGAGCCCCCTTCATGTCCCTGTTCCTCAGACTGTAGATGAAGGGGTTCAGCATGGGGGTGACTATTGTGTACATCACCGAGGCTATTGAACCCTTTCTGGAGGGGTGGGCTGTTCCTGAAGTGAGGTAGACCCCAAGGCCTGCGCCATAGAACAAGGAGACAACTGAGAGGTGAGACCCACAGGTGGAAAAGGCTTTATACTTCCCCCCAGAAGATGACATGCCCATTATGGAGAAGATAATTCTAGAATAAGAGAAAAGGATCCCAGTCAGGGGAATAATACCCAGCAAGCCAGTTACAAAATACAGCACAATGTCATTGACAAGGGTGTCAGAGCAGGCAAGCTTGAGAATTTGAGCAAGTTCACAGAAGAAGTGGGGGATTTCTGTCTCTTTGCAGAAAGATACCCTCAAAACCATCAAACTTTGCAACAAAGAATATGTCAGGCAGATCAGCCAAGAAAGCAGAAGCAGGAGACCACAAAGGTGAGGGTTCATGATGACTGTGTAGTGCAGCGGGTGACAGATGGCCACGAACCGGTCATAGGCCATCACTGTCAGTAGCAAATTATCTAGCCCAGCAAAGGTCATGAAAAAATACATCTGGGTAAGGCATCCTTCATACGTGATGCCTTTGTTCTGCTTCTGGATATTTACTAACATCTTGGGGACTATGGTGGAGGTGAAACAGATGTCAGTGAAGGACAGGTTGGAGAGGAAGAAGTACATGGGGGTGTGGAGGTTGGACTCAGAGATGTTGGCCAGGATGATGAGCAGGTTCCCTGTAACACA----GACCAGGTACATGGACAGGAACAGTCCAATGAGGAGGGGCTGAAGGTCCGCATCATCCGAGAGCCCCAGAAGGATGAATTTTG a score=11158 s mm7.chr9_random 2384100 578 + 9745104 CAAAACCATACGTTTTGAAATCTTCCTGCCAGCACTGACAAATGATCCAGA-CTTCAGACCATCATAATCACTCTTTACCTGTGCATATAGTTGATCACAATATTAGAAAATATTGTAACATTATTGGCCCTTATCTCTGACTTTCAC-TGCTCAATCCTAGTTACTACTTTGTCTATTATGTGTCTTTTAATGACATTTGTTTATGCAGTAACTCTATTGTCCTGATGCTGCTGAACATACAACCTGGGACTCAATAGCATTATTTGCACAGGATGCCATAGCATGATCTACTTTGTTGTCATTTGTACAAGAACGGAA-GTTTTTCCCATGGTGTAATGGCCTATAAACACAATGTGGCCATTTGTCACCTTGTTAGATATCTGGTCCTTATGAATCTCTACTACAGTATTATTCTGGTATTATTAGCTCTGTGCACTAGGGTTGCTAATAGCCTGCTACATAATCTATTAGTGCTTTGGTTGTTCTTCTGGACAGCCTAGAAAACACTCGTTTCTTTTTCttttttcttttgagacagggtttctctgtatagccctggctgtgctggaactcactct s bosTau2.chr7 32764889 513 + 69141744 CAAAACAGGAGTTTCAGAATTCCTTCTTATGGAAGTGACAAAGGATCTGGAACTGCAGCCACTCCACTTCATTCTGTTCTTGTCCATTTACCTGGTTACCACTCTGGGAAACCTGCTTATCGTCATGGCTGTCATCTCTGACTCCCACCTCCACACCCCCATGTACTTCTTTCTCTACAACCTGTCCTTTACTGATATCTGTTTAAGCACAACCACGATCCCAAAGATGCTGGTGAACATCCAAACGCAGAATCAG-AGCGTCACTTACACAGGCTGCCTCACCCAGCTCTGCTTTGTCCTGGTGTTTGCTAGTTTGGAAAGTTTTCTCCTTGCAATAATGGCCTATGACCGCTATGTGGCCATTTGTCACCCACTGAGGTACATGGCCATCATGAACTTTCGCCTTTGTGGTTGGCTGATTCTATTCTCCTTGTTTATTAGCATCGTGGATGCCCTGCTCCACAGCCTGATGGTGTTGCAGCTGACCTTTTGCACAGAC-------------------------------------------------------------------CTGGAAATCCCTCT a score=6859 s mm7.chr9_random 2384779 320 + 9745104 TTGCTTTTTTGAACTTGAGTTCAAGTTCTCAAGCTGGCCTGTTCTGACACCTTCATTAAC----------------------------------------TTTCTAC------AATTGTTTTCTCCTCTATATTGCATTGTGGCTACAATGTTGACAGTGGCAGCATAAGAAAAAGGTTACCAAGACTTTTCTAGATGTGGGCATCATATTCCAGTTCTTTATTTGTGATATGTGATAGGGTAGATTATATACATTAACTCAGAAATAACTGATTTGCCCAGGAAGATTGCAATTGCTTTGGTCATATATTCTAGGCCTCCTGTGATGATAAACAGCTTCATCTACAATTTTAGGTACAAGAATAT s bosTau2.chr7 32765402 363 + 69141744 CTTCTTCTGTGAAGTT--GTTCAGGTCATCAAGCTTGCATGTTCTGATACCCTCATTAACAATATCCTGATATATTTGGCAACTAGTATATTTGGTGGTGTTTCTGTGTGTGGAATCATATTCTCCTATAC-TCAAATTGTCTCCTCAGTTTTGAGAATGCCATCAGTGGGTGGAAAGTATAAAGCTTTTTCCACCTGTGTTTCTCACCTCTCAGTTGTGTCCTTATTCTATGGCACAGGCTTGGGGGTGTACATTAGTTCTGCTCTTGTCAATTCTTCCAGGCAGACTGCAGTGGCTTCAGTGATTTATACAGTTGTCCCTCAAATGATGAACCCCTTCATCTATAGTTTGAGGAACAGGGACAT a score=3991 s mm7.chr9_random 2469652 138 + 9745104 AAAAGGAATCAGAAAAGCAAATGACAATAAGACTAAAGGATGTACTCAATAAAGAATTGTGTAGCAAATACTAGTAACATG-AACAGACCCTGCCAAGCACTCTTTCTGGGATCTTTTCAATCAGTAATTAATTGACAA s bosTau2.chr10 39910126 131 + 70001009 AAAAGGAG--GGACACACAAAGGGCAA----ATGGAAAAATG-ACCTGACAAAGAATTATATGGCAAACACTAATATTATACAACAAACTCTGCACAACATTCTTT-TAGAATCTTTCTAAATAATAATTCACTGGTAA a score=13067 s mm7.chr9_random 2469803 697 + 9745104 CTTTTCTCCTTAATAAACTCAGTGTGTCTCGTTGTCCAAGACTACAGTATCTG------CATGAAGTC-----------------------TGGGAAGGTAACCATTTCCTACTGGGCACATTCACCACATGAAATTCTCTCATTGAAAAGCAGTGGAGAATTAGATGCTGAGCCGTGGCAGCCCTGCTGAATGGAACGGGAT----CAGTG-ATTTGGGGCAAAGCACAGTT--CAACAGTCAGGTCAGCTGTCTTGATGATTTGTGCCAATCACAGAGGTCAGGCACAGCTTCCAGAGATGGGACACAAGTCAGACTGACTTTTATAGTCACCCGAGTGATTAACTTTACTGTGGCCCTGAACTCTCTGTTGTAGTGATTCTTTCATCTTTA-GTTTTCATT--------TTGATGGATGGGAGTA---GAGGGGGCAGTAATAAAGGCCAGCCAAGCTTGTTGTCTTCCCTCCCCAAAGAACACGCCGTTGAGACAGGAGAAGG-AAAATCTAAGATTTAAGTTCATCTGCATATCTCAGTAGCTTTGCTGGACAAAGTGACCTTAGACTGCTTAACAAAGTTCTAGAAGCTTCTAGAAGGCAACGCTTCTATCTTCAGCTTCCATGTTTTCTCCACCGGAGTTAG----AATAGGAGTGGTGTTTAACCTTTGTTTGCC-ATGTGTGATTCTGA-AGATGACAATTCGCCAAACAGTTAGAACTTTTAATTGAGTGAAAAGTCGTCAA s bosTau2.chr10 39910571 710 + 70001009 ccttctccTTTAATAAGCTAGATACATCTTATTGGCCAAAACTTTGCTATATGGCCATTCCTAGAGTCAAAAAAAAAAAAAAAAAATAGCCTGGGAAGGTAAGTGTTTCATAAAGGACACATTTGACTCTTGAGGTTCTATTAGTAAGGAAAAGAAGAAGAATGGGTATTAGGCAG--ATGGCCAT----------ATGAGATATCCCAGTGTGTTTGGGTCATAGCATGATTGACTAGAGTCATGTCAGCTGTCTTAATGATTCATACCAATAACGGAGGTCGCATAGAGCATTCAGAGAC-TGACACAAA-CACATTGATTTTTATGATCA-CTGAATGATTAAC--TACTGTGA-CCTAAACTGATGATTGTACTGGCTCTTTTATTTTTCTGTTTTGATTGAGAGTCACTGACCCACATCAGTGGGTGATGGGGAGTTAATAAAGGGCAGTATACCTT----------TTCCCCTAGGAAGGTA-TGATAGGGCATAAGAAGGAAAAATCCAAGGC----ATTCAT-TGTGTTTTTTGGCAGCTTTCCTGGAGAATCTTAC------TTGCCTAATAAGAT--GACAAGCTTCTGGAAGACAAGTTTCATTTCTTAGGCTCCTTCATTGCCACCACAGGGGTTAGTTAACACAGAAGCCATACTCAAACTTTGTTCACTGATGTATAAACCTGATAAAAGGCAGTTTATTCAGAAAATTGAAGTCTCAACTTAGGAACAATTTATCAA a score=11496 s mm7.chr9_random 2472254 528 + 9745104 CCCCTCTCTTTGTAGAATGGGAACAGTAGTGTTCATGAATAGCT---------GGATTACATTGAGTGTGGTTTGCTTCTTATTTCCATCTCCCTGTCTTGTGTTTCCTTGGTACAGAGGGAAAAATTCATAAAACTACTGGACCAGTTGCATAACTCCTTAAGGATTGACCTGTCAAAGTACAGGGTAGGTACAACATGATTTCCCTTCAGGTAGGGAAATCTTCCTTTCTCTGGATAATTTCTTCCCTTAACGTAGGGAAACCTGCCTTTGTTCTAGGTAATTTCTCAACATAGTTATCATTACCTGTCCTGAAATAGGAAAGTA---ATACTGATTTTTGAGTCTGATA------CATTGGAAGC----------AATCCTCAAGAGATTCTTTGTTGTTCTCATACTCTGGGTGCACATAAACCCTAACAATAACAATAACAATACACTGTGTGTGTACAGCTCACTCTTGGAA-ATCTTAACAACCATCTGGTGGAATGCCCGTGAGCCGATTCATCGAG--AGAACACAAGGTCCA-GCCTTATTTTGAGAATG s bosTau2.chr10 39912005 501 + 70001009 CCACACCTtctataaaatggggaccataac--tca-gactagttttgttgtgaggactacatTTAGAATGATCA----TTGATTTCCGCTTTCCTATTTTGTGTTTGCTTTGTACAGAGGGAAAAATTCATAAAACTACTGGACCAGTTGCATAACTCTTTAAGAATTGACCTGTCAAAGTATAGGGTATGTACAAAATTATTTGCCTAAAGGTAAAATGCTGTGCTTGGCTC-AGATCATTTCTTGTCATATTGTAAAAAA---------------------------------------GTTATCCACTGTGTAAGAGAGAAGTAAAGATAATGATCTTGGAATCTTGTGTTCTGTCACAGTAGGCAGGTCTCCTAAATAATCAAGTACACATCCCTTGTCCAGGTAC-CTCACTCCACTTCAGCCT-----------ACAACAATACTGTGTGTGTGTACACATAGAGCTTTAAATATTTTAATAGTCATCAGATTGAGTGGCTGACTGCTACTTCATGAAGCAGAAGTATGTGGCCCAGGCCTCATCTTGAAAGTT a score=11746 s mm7.chr9_random 2473140 1403 + 9745104 taATTGCATATTTCTGAGAATTACTA-ACTGAATGTTTTCAAGGTCCAATTGCATGTTGAAAGTAACATCATTATAACATGACAACATCACACCTA--CCAGTCTACTATAGAAGGCATTTCAGGGCAAGATGAGCCTTGAACACAACTTATGTGTCATCATGTAGCCA--CTAAGCCCACTCAGGGTCATATGACATATCC------AGGAGTCAGTTTGGGATTCTCTGATGACTG--TAGAAAACCTATACAAAAACAATCATCAGTTAATTAAAGAGCTTTCTTAAGGTTAAAACCATTTGTTCTTTCAAGTTCTCTTATAAAGGTACTTTGCTTTCCCCCCAGAATTCTAAATATCTGTATTTTTAAGAAACTGGTCTCAGGGCTCCTCAGTATGGAGAAAGTCATGTCTCAAATTCATATTTCAGATCTTGGCA-TACAATCTTATTT-----TCTATAA---CTAGAAGTTTCCTTGTGGCTGAAAAGTGAACATTATCACCTGTACTGTGTTC--AAAGTAACTTTTGAAAATTAAACCCATCTTTGGAAAATGATAAAAA--ATTTTTAAAA---ATACTAATATCCCTTCTT----TAAAAAGGATATTTTATAAGCAGGAATTAGTCCTTTAATGTTGCATAACTGATAATGTAGTATACGTTTAAAACTTTGTCTTTATTGATGCacagtttgatccattgatacgatggatttgttcattttcagctctccattctccactctcaccaccctctctcctgctggaacacttcttatcaactccaccccaactgtcatatctttatcttgtgtgtggcacactgagtttaattaggttttcttgtcagagtatgggtaagaggttatttactggaacaccacaactcatcagtggctgctaaacccctgaagaaaaTGGTACCCTGAGGATGAATAAAAAGGTCTGGCTTTCTGAGATGAATAGCAGAATATTTCTAAACCTTCTGTTTTTCAGAATGTTCTATGATAAGAATTTAGAAAGAAGA--------ATACTTTTTATAAATTATTAACTGTTATATGACTTACTTCATGCTTTTAATTTTTTTCACAGTAAGCTTGTTTTCATTAGTTTCCATACT---------ATGTCAACAACTTGACCCATCTCTGTTTCATATTTAACCAGGAAAACTTTCCAGCCAGCAACAGTGAGAGACTACAGGACCTAAAGTCCACTGTGGACCTGTTGACCAGCATCACCTTCTTCCGGATGAAGGTATCTCATCTCATTCCC----------ACAATGCCTTGGTGTGACATCAGAACCCATTTG-TCCTTGGACAGAGCTTGGCTTGATTCTGCTCTTGACCAG----GTCCAGCC-----------AGAAAT----CCTGGGCTAGATGACTTTTCTAACATAAGGTTTATCAAAGAAACAAGTGTTCTAGTCACTT----TACACTGATACAT s bosTau2.chr10 39912903 1181 + 70001009 TTAATGCACATTTCTGGAAATTATAATACCAGATTTTGTCTGACTCATCTATCATGTTGGAACTGGGGCCA--ATGCTATGAGAAGGGAACTGCTATGCCAGGC-AGTGAAAATGATGTTTGGGAACAAGAAGGACCTTGAGGCCACCACATTCACCATCACTTTGACACCCCAACTTTGCTTGAGTTC---TTGAATATCTACTAAGAAAAGTTACCTGTATTTTTTCTGATGACTATTTAAAAAGCCTCTCTGAAAGCA------TGTTAATACAAGAAATTTCTCAATGATAAAATCGTTTCttt-----aatattttaataattataCCTTTCCGTTTCTTCAGAATTCTGAACATCTGTTCTTATATGACATTTCTCACCAAACTTTTT-----------GTTTAAATCCCAAATACATTTTGTAGAGAAGTACAGTGCAGTCTAATTTTTATCTTTTTAATTTTTAAAAGTTTCTTTATAAC-AAAAAGTAAATA-TAGCACATGTAAAGACTCCCAAAAGTATTTTCAAAAAAAATTACCTTTCTTGATAAAATTATAAAACATATTTTTCAAATATGTACTGACCTTCCCTCTTTCAGTAACAATACTATTTATGAATCAAAGATGAGTAACCTAATAGTGC--------------------------------------------------------CGCATTAATGCTATTATTTTGTACATTTTTA-----------------------------------------------------------------------------TTATATTGTG------------------------------------------------------------GGAA-----------------------TAAACA---GAAGAA------------------------------TGACTTTCTAAGACTAAGACAAGACTATCTCCAACTTTTTTACCCTCTGTAATATTTTATAGTAAAAATGTTGTGAGAATACTGTAGTGATACTTTC--TAAATT--------TTACATGATTTACTT-ACCTTTTTTATTTTTCCCACTGAAAGCTAGTTT------ATTTCC-CACTGGAACCTTAATGCTGGTAATTTACCCATTTCCTGTTTTCTAATTAACCAGGAACACTTTCCTGCCAGCAATGCTGAAAGATTGCAAGACCTGAAATCAACTGTTGACCTGCTAACAAGTATCACCTTTTTTAGGATGAAGGTACATCGTTTATTTATTTATTTTTTGGTCACTGTCCCCACGTGAC------ACACATTTATTCCCTGGTAAAATCTTGTTTTACCTGTG-TCTTGATAAGTATTATTCATCCCCTGGTGAATAAGATGTGGTGCCTTTGCTAAATGAATGTTACAATATAAAA--TGTTGAGAAAAGGATTATCCCAGATGCTTAGGATATTCTGATACAT a score=18557 s mm7.chr9_random 2476140 536 + 9745104 TTAAACATTTTCTCAGGCCGTATATTT--TAAGCACAGTCAAATCACTT-------------GAATATTGTTATAATGGCTTTATGGGTTTGCAGCATTCTGTTATTTTT---TTTAA----ATGATTTGTCTGCCAGGTCCTGGAGCTGCAGAGCCCCCCAAAGGCCAGTGCAGTTGTGAAGGACTGTGTCAGGGCTTGTCTGGATTCCACATACAAGTATATCTTCGACAACTGCCATGAACTCTATTCTCAGCTGATAGACCCGGTAAGAGGAGAAGTACGGCTTTATGAGTGCTGTTGTTCTGTTTCTAATATCTGTTTCAATGCACGTAGAATAACAGAAAATGGGGAGCTATGCTCATTTAGTCTCAAATTAACCACAGTTTG--AGAATTCCCATCTCATGTCTTCACATTTGAACATCATTTCCCTACGTTTGAGctaatttattcctcacaatagctttgtgtggcaaaggcagatattattgtctcagtttttcaggtgcataattgcaattagaagaattaaatgtcttgctccagttcacagagtggg s bosTau2.chr10 39923536 524 + 70001009 TTAAAACCTTTCTCAGACCACATTTTTCCTGGATATAGAAAAGTCAACTAAAAGTATTTATAGAATATTGCTTGACTATTTTTATACAGTTAATACAGTGttatatttttaaatttaagaaaataatttGTATACCAGGTTCTGGAGCTGCAAAGCCCCCCTAAGGCCAGCATGGTGGTGAAGGACTGCGTCAGGGCTTGCCTGGATTCTACGTACAAATATATTTTTGACAACTGCCATGAACTCTATTCCCAGCTAATAGACCCGGTAAGAAAAAA----------TATGTGT-CTATT-TTCTG-TTCTAATGTCTGCTTCCATA-------------AGTAAGTGGGAAAGTATGTTCATTCAA-CTTACATTACCTGCAGGTTGTTAGAATTTCCATATTTTTTCTTCACATTTGAATGTcactttaatgtacatgaaacaatccactccttgcaataacttcttatattaatggtggatattat----tcaaggtttcaagtgaggagt--cagtttcaaa---taagtgattgtctcaaagtcacatagtggg a score=5822 s mm7.chr9_random 2477635 326 + 9745104 AATCAGAACTCACTGCAGAAGCATCAGTGATGACAACTGCTTAAAAACACACAGGATAGAGCCCAA-TGAAAATCTCTTAACATGGTAA-----TTTTGTCAAAGCACAGGCCTAGGTTGAGAGGCAAATGTGAAATCTGAAACAATGTTATGAGGAGCTCTGAGCCAACTCAA-GGAGTCTTACACAATTGAGACACATTT-TATGCTAAAA------------GTTAACATTT----GAAATC-TTCCAGTAAATCTAGATGCTGTCACCTTTATTAACTTGAATTTGTTTATA-----------GAAATAAATATTATATGTAGGAatatatatgtatatatatatatatatatCttta s bosTau2.chr10 39934726 342 + 70001009 AGTTAGAAGACAATGCAGAAACATAATTAAAAGAGA-----GAAATATACTGAAGACAAAATTCAAGTCAAGATATCATTATTTACTGAGTGATTTTTACTGAAATGCAGAC-TAGGTTGAAAGGCAAATGTGAAATTCTAAA-----------GGAACTCTGGGCCATCTAAAAGGACTTTTACATGGT---AACACTTTGATGTATTAAAAAAAAATCACTATGTAAACATTATGTAAAAATCATTCCAGTAAACATTGATACTATTGTCCTTATTGCTTTGATTTTATTTATATGATTTTTTTTGTAATAAAAGATTTGTGTGTGCCTGTGTGCATGTGTACACACACACGTATTTATA a score=10601 s mm7.chr9_random 2478088 617 + 9745104 CCAAGTCACAACACTGT-TGAAGAGAAGGCTTGAG-ATAATACAATCTTAGGAAGAAATGACTTGGTCCCTTTCTCTAATTTCCTTAATGCATTT-GTTTTTCTCAAATATTCTACATGGCTCTCTATGACTGGGTTCTATTTCCTTACCATTCTTTCAAATGTCCTATCGAAAA---AGGCATCCTGCTATATTG-----CTTAAAAatatat-atatatatatatatatCTTTTGAATTCTTTGTTTGACTTTTTAAGCAGGAGGATAGTATAGATGGCCAAGGAAAAAACAATCCAAACTATATAGGAAAATTATTTCTGAGGTTTTCATCTTAGGTAGGGAAAAGAGTTTA-AAGCCATCAATAAATTCACAGATATACAAT------AATTTTTTGGCTCCCCCCTTTCTTTTTGCTTTGTCATGTACCAGATACTGTAAAA-----GAAAAAGGGTGAGAGGAGAATAAATAGGACAAACACAATCACTATGGACTTACTTC---TGGCCGGGGGGTAGTTAGCAAAGCCATAATTACACCAGTAACTAAAAGAACGTCAAAT----TCCAGAGAACAAAAACCATGATGTAGTTTTAAAATACAGAAAGGGAAGAGCCACTGGAGCCTGGGATATAGGAAA s bosTau2.chr10 39935438 603 + 70001009 CCAATTTCCCTCACTGTATGCAGAGCAAGTTAAAGGATGATGGAATCTCACATAGAAATGAATTGGTTCCTTTTTACG-TTTCATTGCTGCATTTTATTTTCCTCAAATGTACTACATGGCTCTCCACAGAGAGGTT-TGGTTCTTTACCATGCTTTAAAATATCTTTTTAAAAATTCAGTTTTTATACCATTTTATTCCTTTTAAAATTTCATCGGATAAAATCATCAAACTTTAG------TTACTTGCTTATTCTGGCAT-----TGGTGAAAGCAGCCAAAG-GGAAGCATTCGATATCATAT-GGAAGATTGATTCTGAGTTCTATGTCCCATACGGAGAAAGAGATTTAGAAGTTACACATTCATTCACAAGTATACAGTaactaaaatttgttgaattc----------------ttgttatgttccaggcactgttagaatagggaaaagagcagtaacaagaata---aggaaaaggacactga--atagccatccttctcatgccagagaggtggatattaaaa-aataactaaaccaataactaa---agtgtcaggtgTTCTGAAGGGAATA-----TATAGTGTACTGTTGGAATATAAAACAGAAAGAACCATCCTAGTCTTGGACGCAGAAAA a score=9042 s mm7.chr9_random 2478974 718 + 9745104 ATCAAGTTGACAC-CTGTGATTGGACTCAGGTTACATATAACCTACTAAAACTCTCTTCACTGGGTTACCAATCACGTGGACTTGGCCTAAATCA---CTTAGTTCTCTAACCTCATTTAGTT---CCTCCTAAACAC-------------------------TTTCTG----------TTCTAAGTGGCCA--------CTCCCTTACTTTCTTGTGTC-TCACTAGCTGTTCCCCTCTGAGATTTTTAATCCCAGCCCTCCACCTCCAAGGATTTTGAGTGTCACAGCCACCACCCCAATGCTTTG--------CCTTAGCCTCCAGCTATACAGAATGATTCTGTTCAGGATGCCAAACACCTGCCAGCTGAACTATAAAATTCTAAAT-------GGAAAACAACTTGTTGAAAGTGAGGCATTGGATCCAGGCAAGATAGGATCCAAATCTTGACCA------------------TTTCTTTCATTCTGCAGGCAGCTCTTAAGAGACCTAGATGAGAACAGGCTATCCTGCCTGCTTTGT-TCAACACAGAACCCTGTCTCTGGTTTGGGGGGCACTAAGATGATCTAGGAGGAGCTGTAGCTTTGAGAGGAGACCCATTTGAACTCAAA---------GTTC---CCATCAACTAGGAATCAACTGAGTCTTAAGAA--------aatttctgtaagctttgatttctttgtttattaagaggggataatgttaactacacttgctgcccaaattgctgcgggggctaagggaggtagtgtgtgtgagtc-ccttGCCTGAAGATGCCCAGGAGGTC s bosTau2.chr10 39936256 798 + 70001009 ATAAAAtagactcatttttgttgagcttcagttacctgc-atctactgatattatcttaacaaggtcaccaagta-atagactttgcctaaactagggataaattgtctactcttattttactcgacctctcaataacatttttactgttggctactccatcttttctgaaacgctattttctaagtggttaataatcatctatatttctttcctccatcttcaggggccgctctacttcaaactttttag-cacaccccttcctctactaggtctttaaacgttggag-----atcccagggctctggtcttggctcttactctctggctgcacttaATGATTCAGCCAAGTGCTTCAAACACAAGGT-TTTGTGCTTGGGCATCACAAACGTGTTGGGGAAAAAAACCTGTTGGGATCACATCAACCTATTGGGGAAAAACAG--CTTGTGTGTGGGCCAGGATGAAGGAGGTAGATCCCTTTTCAGTTCTGGAAATAGTTCTCATAATTTCTAGAGATGAATAGATGGTCCTGCCTGCCTTATATCAGCAAAGGATCTTG-CTTTGACTTAAGTGAT-------TGTCTTAggaagaaataaagttttgaaatcacatacatctgttttcaaataaaaccttgtccccaccatcaacttagaaagatatgagtcttgggcaagttatgtaattcctcaaagtgtcaatttattcatttggcaaaaggggataat----aaaacat---ctcacaggattgctgtgagggttaaatgtgatagtgcttgtgaatcacctTACTCATAGGTATTCAACAGATC a score=7725 s mm7.chr9_random 2479721 205 + 9745104 TTTGGTTCGGTGCCTTCCTTATAGAGCCCCGTGGTTAGTTAGTTATATAGA-GGTGCCATTTGCAACACACAAAAT-CCAGTTTTCTGGGCCCACCAGTCTCTCTCTGAAATGTAAAGGTTGTTACTTTCCATCTGCTCCCAGGGAATCTTCCAGGTATTTGGAAGCACTGAAATGTGTTCTGTAATTAAGCTTGGCACCAGAGCTC s bosTau2.chr10 39940483 203 + 70001009 TTTGGTTCATTGCCTCCTTTACTCAGTCTGACTGCTTGCT--CTATAAGGAAGGAGGAGATTATAGCACACAAAATACCAGTTTGCTGGACCCATCAGGCTTACTC--AAATGTATATGCAATTTCTCTCTATATGCTCACAAAGCATCTTTTAGGTATTTAGAAGCACTGGGATATACTTTGTAATTAAGCTTGACACTGAAACCC a score=38777 s mm7.chr9_random 2481582 2515 + 9745104 TTTTTAATGTTTGGATGCCTGACTCCCTGAGAAGTTATCCTGCTATGGAGTGTGATGAAACATTGCCTTACAGTAATATTTCAGTGAAAGTTTGAAAACAAAAGT-----ATGAATTATAGAAGAGTATTAAATCAACAAATAACATCCCTGCCTTGCCTTGCATC-CGTCCTAAAATACAGCCCAGAGAAGAGCGGAAGGACTTTCTCTTTTTCTTCCACTGT--GTAGCAGG--ACTCTGGAAATTGGTTTCATGAAATAT-----TAAACTTGAAAA-CAGTTGTAAAGCCCCATGTCAGGAATAAAGTGGCTTTCTCAAT--TCTAAATTTACTGCTCAAAATCCTTTTTAAAGGCGAAAGGGCCAGCTATTTCTTTTTAGGAGTGTAAAATTATACATACTTTTTGTACACTGA---AAATTGTAAATGGTAATACATAAATTA-----GCTCTCTCTTAACTGGTTTATT------GGGGGGGTAAAAAGATAAG-----------TTCAG--------------AAAAATAAACTGATTGGCAAGGGTGGAATTTTTAGGAGAAAGCCATTTGTGAAGCTAATCACAAGAAAGGCAG---AAAGGCAGAAGGAAATCCATGTAAGCCATTCCCAGTGGACTCCCTCAGTGGCACTGGATTCCTGGTGGACTCTCTCAGTGGACTCCCTCAGTGGCAGTGGATTCCCAGTGGACTCCCTCAGTGGCTGTGCATGTCCCCCTCGCTCTTAGAACTGCACTTCTTACCAGAATTGTGTTTTCTTCTTCAAAAGAATATTTCTAT---TCCTTTCTTGACTT------TTCTCCAAAACTGTGTAGTCTTGGCTGTGGTAATGGTAGAGGTGTACCC---AGATGCCTTAGTTTTA--AAGGAAAAATGAACCATTTAGAGGATTTTATATTCAAAGAGCCCCCA----AGGCTCTTCTCATAATCCACT--CAAATATTTGACCAAGGGAA-----GGCAGGGTACTCAGGGAT-GATGTTGACATTCAAGGAAGTGCA-TCAGTTGAGATTAAACTAGGGATGAACCGAGTG-----------CTCCTATATCACCGT---------TATCCTTATGT---GCCCCACAGATGTGCCTGTCTATGCAGTTGGTCCCTGGCCTCTTCCTGTTCCATGT--------------GACACTCCATGGACCAGAGTGT-TAACTCA----TTCACCTCCCAAGTTCATTTCCTATTGCATTGTTAGcaaagtggtggagtccagggcccacggcatcagcagctcctggagagtatttagcaaa-gcacatgctcagggcccccccgcccccagct-ctgaagcagaaggttttgagggtaggacccaccaaactgctc-aacaagccctgcaggagattcggctattccatcattgtttgagaatcaTGGATGCACAATGTGACTCAGAGAAGAAAAGGAGAGGTTTTAACAACAGATGGAAAGTGGCCCGAGAGAGTAAGGAT-----------------------------------------------------------GGGAGGCGT---GGAAGCACAAGGTCCA----GACAGAGTG------------------------------TTATTTAAAAG-------------------------AGAAGAAAAATGAGTT----------------CGCATCTGTGCACAATCTCAGACTTGGGAGGGGGTCTGATGCAGCCAGAGAGCACA-TCTGGAGCAGCCGCTATCAATGGCGAGGCTGAGCTGACCCTGAGGCCCAGT-AAGAATGAAG-GTGTTACCATTCATTTGACACAAGTAACTAAACAGCGGATTTTG----TGGGGACTGCAGCATGGGGTCCCTTTTTCCTGACAGGTAAGGCCAAGAAGTGAA--AGACGCATAGGAAGCTAAGTTTAACAGTTTGAGtttgtcctgaaagaactgtggagccagtaggaattttaaataggagccttgcgtgatgagatttgtaaagatggagctgacagcagca--gagacttaattggaggggcaggattaggagcatggagagcagttcacaggctCCTCGGGTTATCTTGCTCCATTATGGATCCTAATAGAACCCAATTTATATGACTTGTTCTTTCTAGAATAATTCGTTTACAAAACTATGTCATAGCTCTGTGGTGTGTGTTGGGGAACACTAACATATGCAGGC-GATAAGCATCTCACCTCTGAAAAAAGCTCATTTCAGTTTGGGGATCGTTGGCAACTATGGGTATTTATAGACTGTACCATGAAA---ATAAGCTATTTTGAGTGCATTTAAAAACCCAATAAAAATCATATAATTGTGTTGAAGCAAGTTTAAATTCTTGTTTCTTTCAATTGGGCT-GAAATGCTGTCCATTTGGCACAGGTGCTTTC-TCTCTTAACACTGATGAGAAACTCCAGTCTGACCTTTGCTACCCACAAGCATTGTGAAAGTGAGAAAAGGAGTCTTTTGCTTAACTGACACAATATAAAACAAGAAGAA-TGGGATCCGGTGGGGACAATAAACACATGCATCTTTGTTGTTAAAGACTGCAGA--AGTGCACATTATCTGTTAGTGATGCGGCAGACACGATTGAGTTAGGGGGTTACCCAAGCCTTCGCCAGAAAATAATTACCTAAAATGAAAAGAA--AAATTGAATTGCATGAAAATAATTCAAATTTTAAAATAAAAGA-AGTGCTTTATTTGTAAGTATTTGTACTGAAAGCC s bosTau2.chr10 39944207 2608 + 70001009 TTCTTCATATTTAAATTTGTGGCTCACCTGGAATTTATTTTGATATTAGGTGTGATGAAATCTTGTTTCAAACTGATGTTTTACTACAACTTTGGAAGTAAAAGTTAGGTGTGAACTATAGTGCAGAATCAAATCAACCAATGATATATTTGCTTTCTATTCCATTTCATTCTAAAATACAGCCTGTTG--TATTATAAAAATATTCTTGTTTTCTTACAGTATCTATAACATGTCATTTTGTAAATTGTCTTAATGAAAAATAGTTGTATATTTAAAAATCAGTTGTCAAACTCAGCTTTAAGAATAAGTTGATTTTTTGTGTGTTCTAATCTTATTATCTAAAACTCT-------AATAAAATAACCTAGTACTTCATATT------------TTATATA-GCTGTTTGTATAGTGATCAATATTTTAAAAGACAAAGCAGAAACTAAAAGAGATCTCATCAGGCACATTCATTAAAATAGGGAAAAAAAAAAAACAAAAACCAAAAAACTTCAAGCTCCCAAAGTTATAAAAACAGATAAATTAGGAAGTCTAAACTTTTTAAGAGAAAGTGACTTGAGGAGATAAACACT-GAGAGTCAGGGGAAATGCAGACAAAAATTAATCTA--------------------------------------------------------------------------TGGTTTGC---------------------ATATAAGTTCACTTTGTTATTAGAGTAGCATTTTCTTACAAAACACACTTTCCTTTCatatatatatatatatataatttCAGTCTTTACTCAGTTAATCATCAAAAGCTATGTAGGCTTTGCTATGCTAATTAT---GGTCTTTCTGAAAGATTCCTCTTTTTGATTGAATATAAATAAAAGATAGAGGGAATTCTGTATTCAATCTGTATTCAGTCTAGATTATTCTGATGATCAAATGTTGAAAAATTAACCATGTGAAAATTTGGTATGATGGGTAGTGGTAGATATTGAAATACCAGGAAATGTGGTCAGT----ATTGAGCTAAGGAAATGCCAAAGGTAAGTTTTTATCTCCTTTACCACTATCTCGACATGTAACCTAATTTTAAGCCCCTTA-ATTTGCCAATCAatgtaataaatgcttgtatatttcctgttacatgtaaagcattaggctagatgctagttatgccagggtgaataactcaaagctttgctttcaaagtttattttctactgcaggTttcacaaagcat---agtcatagacctatg-caatgacatcacctg-agagcttgtcacaaatgcatatccgtagg---ccctgaccaggagttactaaatcagaag-ctctgagggtagggtccagcaatttgctttaaaaagccctgtaggtgattctgatgcttacacatggtt-gagaatccctgATCCACA---TAGCTCGGACAAGTAAGGGGGCAATTAAAATATAATGTGGCAAATAGGCTGAAAGGGAAAAGATTGTTCTATGAGCATACTGGAAGCTCAGATAATGGCCTGGGCTGAGAAAGAGGGGATCAAGGAAGGCGTTCAGGAAAAGTGAGTTCTAAGAAGACAGAAAGAATAAATAGGACCTGAGCAAGCAGGGTAGATTAGGTGAAAGGAGGATGGCCTGGTGAGGGAAAGAAAGCAAGAGAGAGAGTTACAGAGCAAGGAGGGTCCCACACGTGCAAAACCTCAGAGCTGTGTGAGAATTTGCTTCCTCCCAGGAGTGAAGCCTGGAGCAACTTTTACCAACCACAGTGCAGAGCTGATCATAAGGCCTGATCAAGGGTCAGGAGTGTCACAA--------ATACTAATAACGATAATACTCACTCTAAAAATAGTGAAAGTAGCTCTGG------------TGATAG-TAAGGCTGGAGAGAAAAGCAGATGTTTTGTGAGACaag-----aagtttggatttatcctgcaggacatgtgaagccactaagaattttaagtaggagcatcagatt-tatgctttatgaaaatgggtttggctgcagaatggagaattaat-ggagggatgagactggaagcaaggagag----------gctatttgagtaatctggctgaCTTAAGTTTTCTAATAGAATC---------TGACTTGTTCTCACTAAAATTATT----TACAAAA-TATGCCTTAGGTCTTTGACAGATGTTGAGTAAGAATAATGCATATTGAAAGATTAAAGTCTTACCTCTTAAATAATGGC-TTCCAATTTGGGAATCAATGACA-TAGTGGGTGTTTATAGAAAATAAGGGGGAATAACAAAGCTATTTTCAGT-TATTATAAAGTTCAGTGAGAAGTATACATTTGTGTGAAAGCAAATTAAAATTTATATTTCCTTCTTTTTGGTTTGaagtggtgtcaactcagtataggttctgtggtcatttaatgcttattagaaactccattttaaccttggcatatcactggaaaacagaacatgagaaaatgagcttttTGCTTAACTGATATAGTAGGAAAGAAAAAGAAATAGAATCTGTGGGAGAAACTAAATGCATGTATCTTGCTATTTAAAGATTACAAACTGTGGCGTGTTATCTAT--GTGGTA-GCTGGACCTAAGGGAATTAGGGAGTTAGCCAAGCGTTAGGCAGAAAA--ATGATCTGAGACAAAAAGAAGAAAATTACATTGCATGAAAATAGTTCAGGTTTTGAGATTAAAAATCATATTTTATTTGTAAGTAATTATATTCAGAGTT a score=12819 s mm7.chr9_random 2484172 787 + 9745104 tttcattttcttttcttttttcttGGACATAGAGAGCCT-GCAGGGTTTAGTGACATTCTATATAATTTCAAATTCAATTC-----AGTATC-AAGTGTGAGGGGCTCTTGTAATCTGATTGAGCTGATAGCAGTTCTTGCTTTCCTTGAGGAACAATAAGATTTCAATTCAGTAATGCT-TCACATGGGACCAAGCCCATATGAATCTAAAGCAAATACCT-AGAGTTGTTGTAGAAAACGTGGCCCTATAT-TAAGTTTCATGT-GCATCGCCAGTAAAGAGATACATGACTGATTACACTAAATGTATGCTCTCATTAATAGCTTAACAGATCTTTGTCAATGTAATCTGTGTCTTGAAAATGGCTAGTAACACACTTAGCTAATGCTTTGATCCTCACTGATGGACAGTTACATGGAGTAGGAAACCATGAGGGAGCCTAGTCGTAGCATACTAGAGCTAGTGTCACT-GGACATCAGTACAACCACACTGGGTTGTAACCACTGTTCAGACCCCTCTGCA-ACACACATTGACACTTACCCTAACACTGTGTCCAGCACAGTAGTACAAACAGGATTGCAAGGATTCCAGTTAAA-------------------ATCTTTTTGA-------AG----TTCCTCACCTTTGCTCTCCATAAAAGATTCTTTTCAAAAAA--AAACCAACCTTCTATCTCAGATCTGCAGAAATGCAGAATGTGGCCAT--ATGGCTGGGATATTCCTCT-GGCCAATCTCT--------TCCTAATTCTATTGGTTATAGACTCCATACTGGGGTCCTTCATTCTGGATCATGCTTCCTCTTCATAATG s bosTau2.chr10 39946883 822 + 70001009 TTTCAGTGTTCATTTATTTGTCTTGGTATCTGGCAGCCTAGTGCGGTTCGATGTGTTTTTGTTCACATTCAAATTTGGTTCCTCTCATTTTCTGAGTGGCGGGTACTTTTGTAATTGAATTGGGCAGATGATAGTTTGTACTTTTAGTGAGGGACAGTATTAATTCAGTTTAGTAACATTATTTTGTGGAAACAAACTCAT--GAATCTAAATAAAAAGTTTTAAACCTATAATGAAAACAGAGGCACCATATCTAATGTTCGCCTCGGGGCACTAGAAGCGTGATATGGCACTGATCAC------TGTATTCCCCATTAAATGGCTTAATGGACCTTATTAGATGTAGTTTGT---TTAGAAAGTGCTGGTAGCGCACTTATCTAGTGATT-GATTCTCACTGAGCAATAGTCATGTGGACTAA-ATACCATGAATGAA--TAATAGTGGTGTACGTGAACCACTTTTACTAGGACTTGAGAAGACTCTAACTGGGTCACCACTGCCATGCAGGGTCCTGCGTTTCCATACATTGTGGCTGACTCCAACGCTGTGCCTGGAGCAGTAGCTCTGATTGAATTACAAAGACTCTAGTCACAGAGATAGTGCAGCCCCACCATCATTCTGATTTGGAAAGGTTTTTTTTCCTCTTTGTCCAGCAGAGGAGATCTAATCCAGAGAGTTAAACTG---TTCCCCATCAGATCTGCAGAAGCACC---TGCAACCCTGGATGGTCCTAAGGGTCCTCTCAGTCCTTCCCTGTCTTTATTCCTGACCTCACTGGATGCAAGGACTGCCCTGAGCTCCTTTGCTCTGCGCCATCCTTCCCTGTCTTGTTG a score=2354 s mm7.chr9_random 2485421 123 + 9745104 ATGACCATGTTAATTTATGATTTT--------TCACATCAGCCATGATTCCTAGGAGATTTGAACTTTATGACAGAAGCATCCAAGTTTCCCCAGTTAGATTTCATATGA----------------TCTACCTACCTAGCCTTC--------CCA s bosTau2.chr10 39948184 151 + 70001009 ATGTTCATGTTGATTTGCAATTTTAAATCAATGTATGCCGGTTATGGATGCTGAGAGACCAGG-CTTTCTGATAGAAGAGTCCAAGTCTTTTTGGTCTG---TCATGTGACCAGTTTTTGAGGACGTCCACCTACCCTGCCTCCATGACCCCCCA a score=15351 s mm7.chr9_random 2485544 571 + 9745104 TATGGGATGCAAGTGCCTATCTTAGAGATATTTGGAATTA-GATGGTTTTTCTGCCCTTTGTAGAATGATGGG--AAACTTTGCCA------TTACTCTATTGTTCCAATGCAGATGA-----TTTTCAGTACTACCTGTGTATGTCATTCCAGTTCCTATTTT-ATTAATGACTCCCTTTAAGATTAAGCCTCTCTTTCCAGCTACAGAGGGATTTAA-TTTGATTTTAAAAGCATCTGGTTTGTTGTAATTATGCTGTTGTTCAGATTTAGCTGCTG------CAGCCACCTGTGCTGCTTCAGTGCTGCATTCCAAGCCTCCCACCCCACCCTGACAGCGGATTCTCTTCCACACCACAGCAGAATGTCACAAAGAGGCCAGCCGCTTAGCGTGCTGACATCCA-CCTCCCGAGATTTCCCTCGTGGCTTTACCGAGGTGGATTTTAATCCTGCTTTGTATTTTGCCTGAGATTTACTCTTCTAGCCCAATTTCAAATCCCCAGGATTAAAAGCCATCTTTGTCTGAAAGCATTTTATTGTACTTATTTATGT-CACAAGAATTCATACACTGACACACAGAATTGCATGTG s bosTau2.chr10 39948483 560 + 70001009 TATTAGTTTCATTTCCACATTTTGAAGATATTTAGAATCATGTTAATTTCCCTAACATTTGCAGCACTTTAGATTAAAATGTTCAAAGAGAATTGTTTAGTTGTTCCA-TATAGATAAAGCAATTTGAGACATTACCTATGTGTGTTATCTTAGTTGCTATTTTTATAAATGGTTCCTTTTAATATCATCTATCCCT---CAGATATAAAG--ACCTAGCTTTTATTTTAAAAGCATTT---TTATTATGATTATTATGTTACTCTAAATTAATTACTGATGTTTTATCTACATATAAT--TTTGCTGATGCATTTTCTACCTGCTGT---------ACAACAGATTTTGTTCCGTAACATGGCAAAATGTTATAAAGAAGCTGTCAGCTTAGGGTACTTATGTTTAGCCCATCCAGATTTCCCTTATGGCTTTACAGATGTGGATTTTAATCCTGCTTTGTATTTTCCCTGGGATTCATTTTTC-ATCTCAAAGTCAGATCCCCAGGA-TAAAAAATGTTCTTGTCTGAAAGCATTTTATATT--TTACTTATGTGCACAAGAC-----------ACACACACATCTGAATGTG a score=4957 s mm7.chr9_random 2488768 152 + 9745104 TGAGCACTGCTGCCCAGAAACTGGTCTTTACCAGTTTCTGCTTGGCTGCAAGCTCCGCATACTCCACTTGCAG-----GGAGCTGAGTAGAGAAGGGAAAGGACGACGAGGAGGCTTACCTGGATGTGAGCTCTCCTAGAAAGCTAGAAAGCACAAA s bosTau2.chr3 80612944 143 + 85360813 TGAGCACGAC-ACTGGGAAACCAGCCTTCAC--GGTCCTGTTT-----TAAACCCCGGGTTTGTCCCCTTCAGACCCTGGAATCAGGCAGAGAAGG------ACGGCGACGAGGCTTACCTGGATGTGAGCTCTCCCAGAAGGCTAGGAAACAAAAA a score=504 s mm7.chr9_random 2883427 382 + 9745104 CAGAATTTATGTTCTTAACAAACAT---ATGCTATT-TCTTGATTGATAGTAGTACTGG--TGCTTTCCCGTTTTGTTCAGTAGAGAGGGGGAAATACTATTAGAAACAAAAACTGGATGTAGCCTCCCTAGTTTCCAAGGGTGGGGATGCAGCCCTTTAATCcccacctggtctacaggagggtccaggatagccaggactacccagagaaaccctatcttgaaaaatcaaaaTTAAGTAACTAATTAATTTTAAAAAGAggggctagaaagatgactcagtggttagagcaccagctgctcttacagaagacctgggtttggtccccagcacccacatggcccctcacagctgtctgtaactctggttccaaagggcctggtgctt s bosTau2.scaffold351 431682 232 - 528081 cagaacctctgctcttaaccatcgtggtacactgCTGTGTGGTTTGTTAGTGGTAATGTGTTTTTTTTCTGTTTTATTTACTCAAATGGGAAAACTGCTATTAAAAACAAAAACTGAATACAGCCTCTCTGACTT-----------------------------------------CAGGAGTGAC------------------------------------------------------ACCTAATTTATT------------GCTAG------------------AGAGTATGTGTTGTTTC--------GTTTGAGGTAAGTGCCTAG-------ATGGACCT----------------CTTTGATTGAGAAAGGTCAGCTCCCT a score=7916 s mm7.chr9_random 2883915 308 + 9745104 GGGATTAGTCATATGTGGATCAGGAGGATAC-AAGACCGAGCAATTATTACAAATAATGAAAGAAAAGAAATTTGGGGTTTTCAAAGGCTATCTCAAAGAAATTGAATGAGGCCTAGAGCAGAAAAGCCATCGTGGAGGTCATCGAGATGGAAgcatgttagatgcatgttagatgcaGGGCAG----------------TGCAGACACAGCCGCTGAGGAATGTCTTACTGCTGTAGAGAATGGCTATCCAGTCTCTCCATTCGGACATCTACACGCTGAATTCGGAGCTTTCTCTTG---TGTGCTGTAGCATTCTGCTAAGTCTA s bosTau2.scaffold351 431914 316 - 528081 GGGTTTAGTC-TAAATGGGCCAGGAGGATACAAAGGGAGATCAGTTACTACAAATAATAAGAGGAAAGAAATCT-GAATTTTCACTGGATGCCCTAGAAAAA--GAATGAGGCCTAGGAAAGAAGTG----GAGGGAGGTTGATGAAAAGAACTGAGATGGGATACATGCCAGAAACATGGCAGGAGGCAGGGGCCTACTGGAGGACATGGCCGGTGAGGAGTTTC---CTGAGATAGAGCATGGCTGTCACAT-TTTATAAGCAGTCACATGTGTGCTGAATTTGAAGTTGTTTTTGGCTTTGTGCCATAGCCTTCCATTAACTCTA a score=7091 s mm7.chr9_random 2935394 118 + 9745104 GGTCTCAGAAGTTCAAAGCCTCAGCTCATCACCTTGGCCTGCTTAAGGCTCGCCTTGCTAAACTTAGAAGAGGACTCATCACTCGTAAAGGTGGCGGCGGCggaggagcaggaggagg s bosTau2.chr17 43647624 118 + 45915461 GGACTCAGAAGAACAAGGCCACAGCACACCACCTAGGGTTGCTTAAGGCTCGTCTTGCTAAGCTTCGCAGGGAGCTCATTACTCCAAAAGGTGGTGGTGGTGGAGGACCAGGAGAAGG a score=6166 s mm7.chr9_random 2936183 268 + 9745104 AATACATTCAATTAAAAAGCAGCATCATTTTATCTT-GTAAAGTCTTAATTCCAGAAGC---------AGCAGGCAAGGTTGCTTGTTGTGATCTTAATTTTTGTCACAGTTTGATAAGAAAATGATTGACTTGGAAATCCAAGTTAGGGACAAAGGAAGGGGCAGGAAT-CCAAACCGGTGCAACTCT-GGGCTGATTCCATCTAATACCATTACTGAGTGACCCGA------GGCAGCAAGGACAGAAT-----TTCCTGCAGGTGACACC-ACAGGAGACAGGGCTTCT s bosTau2.chr10 8740913 282 + 70001009 AATTGATGCAAT--AAAAGCTATATGGCTTTATTTCAGGAAAGCCTTGATCCCATCAACCTTATACTTAGCAGCC----TTGCTTGTAATGATCTTGATTTT-GTCATGTTTCAGTGGGAAAATGACTGATTTGAAAAGCAAAATCAGAAACACAAGA--GAGCAGGAATGTCAAACAGGCTCAATCCTAAGACTCATTCTATGATATATCATTACTG-GTCTTCTGATATAGTGGAATCAAGGATATTCTAACCCATTCTTCAAGTGGGACCAACTTAAGACAGGGTTTCT a score=15417 s mm7.chr9_random 2936451 662 + 9745104 CTGGGCTTCTTGAGGAGCACAGCGTA--ATTATCAGGGATCTCAAGAACATCAAGGTGAAGAGGATTGTTGTCAAAAGAG--TAACATTCTGTGTGTGCTGGGGTGTAAGAGACATGGTGAAAAT--CCCCCAAAGGGAAGGAGAAATGAG------------CCAAATTTGAAGATGGCAGAAAAAGATGCAGGACTTGTTGTTTATCCTA----------GGGTTTCAACTCTCTAAGGTCCTATTCAACTCTGGCTTTGAAATTAAAA-ACCAAATCCCATTTGACCAATCAGCACATGGGAAAGAGCATCTGGTCCCTTGCTGTTC---TTCTGTCACAGTCAGGACTTAGGACAAG-----------GGTCTCAAGTTTCCAGGGCAGTGGTATGGGAAACAGACTAGTCAGGAGTCTGAGAAGCGGGGC------GGGCAGGGG-----CAGTACAATGCGG--AGCTGTGTCCTTCCTGTTCTGATGTACTCT---GGGTAGCATCACTC-------CTATGGTGGTGACACGCTC-CGCCCATATTAGAGTCTGCTCTCCTGT--AGCCTCTGAGACTCCTGCTTCTTCCCTCCCGATTTCAAA---TTGCAAATAGA---TGATCTAACCCAGCCACTTGGTCAGAAATCCTTGG--------CCAAGCCCACTGGGAAGAAGGGACCTGGAAGCCCAGGGCCTTATCTTTC---TTCCACTTTCCCCTGTAGTTCCAG s bosTau2.chr10 8741425 721 + 70001009 ctgagccactagggaagcccAGCATACAATTTTAAGAGACCTCTAAGAAATTAGGGTAAAGGGAACTACTGCAGAAAGAGAGTGACATTCCATATAAGCTGGGATGTAAGAGGCAAAACAAAAATAACCCACGAAGAGCAGGGGAGGTGAGGGAAAAAAACAGCCAGATGTGAAGATGGCAGGAAAAGATCCAGGA---ATTGCTTGTCACAAGCAAATACTGGGTTTCAGTGTTCTAAGATCCC----------GGCTCTCAAGTTAGAATCCCAAATCCCATTTGGCCAACCAGCTCATTGGAAAGAATGCCTGAATGCTTTCTGTCCCAGTTCTGT-ACA-CCAGGACTTGGGGCAAGGCCTGCTCTCTGGTCTC-AGCTTCCACAGCAGTGATGTGAGAAACAA---GGGCAAGAGACTGGAGGACAGGGCAAAGCAGGGTGAGGGTGCATCAGGAAAACCTGGAAAGCTCCCTTCTCCCCACTCCTGCCTGCCCCTGGGGGGAGCA-CACTCCCCAGCACTGTCAGGGCGACAAGCACACATCTCTGTCCCAG-CTACCCTTCTGTGAAGGTTCTGGGCCCCACTCTGCTTCCTGC------TCAAAGGCTGGCCTATAGACTTTTGTCTAGCCTCCACCCCTTGTCAGCAGTCCCTGGCCTGCACTCCAAGCCAATCGGGAGGAAGGAGGCTGGGGGCCCTAGACCTCCACTCTCCTGTTCTATTTTGCTCCCCAAGACCAG a score=21447 s mm7.chr9_random 2937461 672 + 9745104 TCCCAAGAGGGTCTTGGGAGCCATGGTCCCTGCTC-------TTAC---TTCTCACTCAAGAGATACAATGACTGATCTGTTTTGGAGCCTCTCAGGGACAGCTA----CTCCTCA--GTAATAAGGATCTCCACACTGTGCCTTTCCAGCAGATAGATACCTATTGCCCTTCCCTACTGAGATG----GCTGACG--------------------CATTGTTCAAAGAGGCTAAGAGGGCAGGGGA--------------------CCGCCATAGACTTCTCTCCAAATTAGTGGGAGGGGGTGTTCCTCTGACCTCCACAGCGGGCTGGGGAGAGACTATAACCTTGGGCAGAGGTAGG---CAGATAACTCCTGGAATCGTTGGGCCATTCAGCCCCCAGGATTGTAGTTCCTGCCTTGGCCAGGGGACAGCACAAGGACAATCAGCAGCA-GTAAGCTGCATCCTCCG-GGCTGATTATGGCTCCTCCCTGCCACCCTCCTTCCCCTCCCCCCTCCTGCCAGGACCCCTGGGGAGAAGGAGCCATCACAAACCAAGCCAGTTCCTCTCCTGTGATTTGTTCTGAATTTTCAAACAAAGAGTAATTATGACAGATGCGGAGCAATCAGTATCATTATGCGTGGGGAACAGGAACGTGAAAGGGAGCCCGGGGACCCCGTGTGGGGGAGGGGAATTTGTCTTCCCTCCTCAGGCACAGGCGACTCCCACCTCCAC s bosTau2.chr10 8743281 676 + 70001009 TCCCAAGAAGGTCTGGTTGG---TGCTCCCTCCCCACCCCCATTACCGGTTCTCACTCA-GAGACCCAAAGTTCACCCTGTTCTA-AGGATCCCAGCCGCAACTGGCCCCTCCCCATGGCCAGTAAAGCCCCCGCCCTGTGCCCTCCCAGCAGGCACAGCCC----GCCCCTCCCTGCAGTGCTGCTGGGTTGACGATGGAGCCTGCCGTCCAACACACTGCTCAGTGGGGCCAAGAGGGCAGGGGAGGAGCCGAGAGGGCAGGGGCCTCACGTCGACCACTCACCCAGGTAGTAGCCGAA-----TCTTCCAGCTACCACAGCGGGCAGGG-----------ACTGTGGTCAGGGGTGGGGGCCACGTAACTGCACGAGGCCTTAGGCCAC---------------------CTTGCCCAGGCAAGGGGACAGCAAAAGGACAATCAGCAGCCTGGCTTCTCCATCTTCCAAGGCTGATTACGTCTCTTCCCTACCACCCAGC-------CCCCACCCCTG---GAACCCCTAGGGAGAAGGATCCTACTCAAGCCACACCAGTTCCTTTCCTGTGATTTGTTCTGAATTTTCAAACAAAGAGTAATTATGACAGATGTGGAGCAATCAGCATCATTATGCGGGGGCAACAAGAAAGCGAAAGGGAGATGAGGGGCCCC----GGGGGAGGGGAACTTGTCTTTCCTCCTT-GAAACAAGCAATTCTCACACCTAC a score=10444 s mm7.chr9_random 3042861 594 + 9745104 tatctaataaaa-aaGAATCTACAGCATAATTCAGTAAATGGATG-CCATCTTGCTCTCTCTAATGTTCACATAGAATTACTTTGTGTTTgagggtatagctcagtggtagagcatttgactgcagTAGAATTATTCTGGAGGAGATAGCAAC--CCTTTAAATAATCCAAGTAGTAAACA-TTAGAGTAAAAACAGAGACCTA-----TTCTATACTCTAGCAGATTCTAGTGTATGTAGTCACCATGAAGCGCTGTCTGAGCATTTTGCAAC---AGTGACATATT--GTGGCTGCTTATTCAAGCAATGAA-ACTTTACATTAGCATAAAATGGCACTAATACTAGTCCAACCAGGCATCTACTGGTAAATTCTAAGAAGTGATATTATATTTTCCCGAGTCTTCCATGAATAagtctcagctctattgctagttcattacacagtcttgaaaaaaggttaagtttactcctttgtac-ttggttcctgtgtctataaaatgaggt---tagttatatggatccctcaggtcctctgcagcATCTCTGCAGTGTTTCCAAAAGGTTCCTGGTGAAGAGCTGACTTCATGGCTTCCTATCACCATCCATTCA s bosTau2.chr10 35703710 542 - 70001009 TATTTAATAGCATCAAAATCAGTTAAATAATTCAACAAATGGATGGCCATCTTCCAATCTCTAATTTGTGTA-GGAATTACCTT-----------------------------------------------------TCAAGGAACTAGCAATGACCTTTTGGTGACCTCAGTAATGAACAATTAGACCAACTACACTGAACTAGTTCATTATGTCCTCTAGCAGATTCCTATGTATTCTGAGACTGAGCAGATCTCACTGGACATTTCACAGCTGTAATGATAAACTCCATAGATACCTATACAGACACTGGAGATTCTACAATAATATACAGTGAAGATGACACTATTTCCCCCAGGTGTCAAGTGGTAGCATCTCAGAAGTTTAACCACATGCTCCTGAGTCAATTATGAACATAtcttagctctaccacta-cacattatatgatcttggggaaaaagctactttacttctctggaccttagtttctttga----aaaatgaggaggatggccttagggatccctgag-ttttcttcaacctGCCT-------CTCAAAGAGGTTACATGTGAAG--CAGACTCCATGAT---CTGTCACCACCAATTCA a score=20538 s mm7.chr9_random 3043455 906 + 9745104 GATCCT---------------ACTAACTACCCC------------------------------------------------------------------------GGTTCTCCTCAAGTGGGTGCAGCAAAC-----CACAATCTCATTGTGATTAAACAGGATTAGAGT---TCAGCTCTCCATTTACATTGACAGCACCAAAATGAGCTGGCTAAAG------------------------------GCATTTGTAGTC-ATTCTTCAGTTTAAGAGGTAGAACTGAAGTAAAAATGAAATTGATAAATAACTATATATAAATATATGACCTGGATAG-TTTTTAATCTTT-GCTATCATCGACATATCATAAAGCTACTTT-ATAACAAAATTCAGCTTAAAGTATGGACCACATTTTC-CTACTTACTATAAAATCAATAAAATCATCACTCATTCAGAGGAAACCAGGAGGCA-------CCACAACTCCTCTTTCACCCTTAGCAAACTGAG--TAAGTTTGGCTCTGTCCTCCGTCACAGGGAAGCTATGGGCAGAAGAGGAACAGAGGACTCTGATTTGAGTTACAAA-GATGGAAAGGGGGA-AATAATGCTTCTC----AGAGCTACTACAGCAGAAGGGATAATA-AACAGGCAAAGGGAAAGTATCAAATAAATCCAAGTAATGATTATTATTAATCATCATAAGTAGGAGTTGCCA---AAGGAGGGTCACAGCACGGGATTTATGGGCAGAGAGAATGGCTCCACTGAGTGCTAGGTCCGGAAATAATGGATAGTGTTATAAAGAGAATAGCACCAGGGCCCTTGCGGATCCAACTGATAGTGCATAATTCTGCAATAGCAGCTAATGGTGAGTCTTATGTGAGGTTGAATACAGTGTGGGGGCGAAAACGCCAAG-TCAAAG---GAAATAG-TGTCTTGTTGAAGGTTCAAAATGATCATGGCA----------CTCCTTCTTGCAAAGCCTTCTAGCAAAAGGCTATCCTTC-----AAGAAGATAAATATGGTAGACACCTTTTCTCTGTACCTGAT s bosTau2.chr10 35704450 1051 - 70001009 gatcccctggagaagggaaaggctacccactccagtattctggcctggagaattccatggGGTCACAAAGAGTCAAACACTTTGTTTCTTTCTATCTGTATACTGGGTTCTGCTTAGGTGAGTAGAGCAAACAGCTCCTCATTCTCATTG--ATTGAACAAGATCTCACCATATGAGTTCTCCGTTGACAACATTAA-ATCAGATTGAGCTGTTGAAGGCAGAACCTTAGGATTCAAGACAATTTCTGCACATTTTTAGCCTATCCTTTAATTTAACAGGTAAAACTGAAA-GGAGGTGAACTGGATAAATAATTACAGAT--------GGCCTGTGTAGCTTTTTAACCTTTTGATATCCT-AATGTATCATAAACTCATTTTTATGTCAGAATTTAGCT-AAAGTATGAACTAAATTTTCTCTGCTTAC----ATATCACAAAA--CAACACTGTTACAGAGAAAAATCATAAGTAATGTAAACCAAAACCTCGACTTCTCCCTCAGTGAACTAAAGATAATCTTTGTTCCTTCCTCCAGCACTAAGATTTTGTGGCCATGGGAGGAGCAGAGAATTTTGGCACAGGTTAAAAATGATCaaaatggagataaaactacttcccctggagggctgctatgagattagagataCTATAATAGGCACTAGGAAAGTGTACAATAAATCATAATAATGATTATTATTTATCATCATAATTAGCAGATGTTATAGCAGAAGGGTCAAAGCATAGGATTTATGGTCAGAAAGAATGGTTCCATTGAGTACCATGGCCAGAAATTATAGATAATATTGTAAAGACAAGAACATTAAGACCATTGTGAGTCAAACTAATACTGCATGATTCTGTGAAAACATCCAACTGTGGGCCTTGGTTGGGATGTAACAGAAAGGGATGAGGGAGTCTCTTAGTTCAGAGGGCGAAATGGCTGTCCAGTGGAGGCTCAGCAGTGGTCATGCTGTAACCCTTTTCTCCTCCTCCCAGA-TATTCTAGAGGGAGGCTGCCCTTCCGGGGGAGGAGGGAAA---AGTACTTACTTGCTCTTTGCAACTGAT a score=2322 s mm7.chr9_random 3044378 80 + 9745104 AGTGCACAAGACAGTGCCATAATTTTTCACACACATTTTGGTTCTTAGACCTGACAGTTACTTGGTTGAGGCACTAAGTT s bosTau2.chr10 35706091 73 - 70001009 AGTCCAAGAGACAACAGCATAATTCTTCCCACTCTTTCTGGGTCTTATCCTTCAGTGTCA-------GGGATACTAAGTT a score=52957 s mm7.chr9_random 3044935 1558 + 9745104 CTCAGCAGCAAATCTTTGCATATCTACTCCCTGGCTGATTGATAAACTGATTTAAATGACCCTCCATACTTATATGTAGACTATTTATACA-TAAAAAAGGGACACGAAAAAAGTTAGTGACATAATATGTTTGGCCTTATGCTCAGTTCAAGCTG--ACACAAGTGT-CTCATATCTGCAATGTACATGGCTTCTCTTTGTATTTATGAAGTACT-------TCTGGCAGAGTCCCACATTCCCCCCTCCCTCCCTCCCCTTACCCtttttttttttt----ttttttttttttttttttAGCATACTCGTGTTTCACGTACCTACAGGAATGGTCATTCCGTGAATTTTATCAGCCCAGCCTGCATAATACCTCAGGGTTTTGATGACTCCCTGCAAATCGATGTAAAAAGCTTGCAGGAATGGCTTACCGCCATTTAGGGATTCCATAGTCTGTAGGAGAAGAAATAGAATAGTTAAGACTTCAGAACTTTGTGGTGACACACTGTTTTCTT-------CAGAAGAAACAAGGAGCAGAGGGAACCCGGCTGGGTGTGAGTGGTGA-GC-----------------GTTTCCCAAACAGGAAGGTGTCCAGTCCTAAGAGGCTTGC----TTTAGCTACTAGTAAAAGACCACAATGGACACCCATGTGC-TATTCTC-TGCCTGTACAT----TTTCCTTAACCACTGTCCAGATATATAAACACACTGCTTCTTTAACTGATGATAAAGAAA-CCCTCCGCTTGTCAAACCACCTTCTGCTATATTAATGGTCAGAGTGGAATGGAGATCTTTCTGAGAGTGCACTAGTAATTCGAATCCACAAAGAGAAGCAGGGACATCAGTTTTGTATGCATTCAACATGGATATAAAATGTTCTCCACAGCTGCCAAGACCCCTGCTGAGAAGAGAAATATTCATGGTGCAGAGCAAGCTTATTTATTACCACCAAATAAACAAGGTCTCCTCTGGGGAAGCCCAGACTTTAACAATTTAAAGACTGGTTTT-TGTAAACATTTATGTTAACAACCATTATCTATTAAGAGTAAAGTATCTGGTCCATTT-ATAAAAATTGCAATAA------TAAACAGCTTTACATTATAAA---CATTATTTTAATGACATGTTCCCAAATTGATTAAGTCTGTTACAAAAACAAT---------GACCACTGAAACAATGA-AGTAGATCGGTTTTCACTTGAGACATACTAG--GCTGCTGGATATTTAACAAATGAAATAAACAAAAATGGATATTTATAATTTACTGTTTCTCTCTAAAAGAACAGTATATAACACATACTGGTA-TAAAATTAT-TAATTACTGACAAAGCTAAAACTGAAATGCT-TCCATTCACTGAAGTTAAAGAACACTATTTATTGCTGATGACAACACAGCTCACCTACTTAC----TGTACAAAACCAAGTTCATTTTTAAATGCTGCTTG------TCACTACACTGGCTCACTTTTATAAAAGAAGATTCAATAGGTTCCAAGTCCTTCTAAAAACATTTATATATTCACAAATTGGATAATAAATTCTCTATGTAGTTAGCTAGCAGGGAGCCAATGTCTACAAAGCAGAGAGAGAATGTAGAGTCAT s bosTau2.chr10 35709578 1549 - 70001009 CTCTGCAGCAGAC----ACACGCTTGTTCCTTAGCTGACTGACGTACTGATGTGGCT--TTCTCTGCACCTATGTATGGACTGGCTACATACTGAAATAGGGATACTGTCAGAAGCAGTGACAAAATCTGTTTTGTTCTTTGTTCAGTTCAAGCTGCTGCAAAAGTGTGCTCAGATCTGTACTCCACgtgactgctgtctgtgtttggtgactgctgtctgtgtttggtgGTG------------------------------ACAGTGTGTTTCTGCTGAGGTCTCATGTTTCCCTTTTCAACGTACTCAGGTCTCACATACCTACAGGAATGGTCATCCCGTGAATTTTATCAGCCCAGCCTGCATAATACCGAAGGGTTTTGATGACTCCTTGCAAATCGACATAAAATGCTTGCAGGAACGGTTTGCCACCATTGAGGGATTCCATGGTCTGTGGGAAAAGAAACAGAG-------------AGAACTTCCCAGTGATACACTAAGTGATTGCTGGAGCAAACAAAGAAAGGAATGGAAAAAATACAAATGAATCTGAATAATGACGCATACCTGGTCAACTCTGATTTCCCAAATGAAAAGAT-TTTAGTACT-----GCTTGTCGAGTTTAGTTTCCAGTAAAAG-CCACCATGAGTATGTATGTGCGTGTTCTTGTGCTTGGGTATGTGCTTCCAGTAACCACTATTCCAATATATAAACAC-----------TACTGGTGATAAAGAAAGTGTTCTGCTTGTC-AACCAGCTTCTGTTATATTAATGATCAGAGCTGCGTGGGGATTTTTCAGAGTCTACATCAGTAATCTGATTCCATAAAGAGGAGCAGGGACATGGGCTTT-TATGCACTTGATGAGAATATAAAACGTTCTCCACAGCTGCCAAGACCCCTGCTGAGAAATGGAATGGCCACGGTGCACAGCGAGTTTATTTATTACCACCAAATAAACAAGATCTCCTCTAGGGAAGCTCATACTGTAACAACATGAGGGCTGGTTTTCTGTAAATATTTAGCTTAACAACCATTATCTATTAAGAGTGAAGTACTCGGTCCATTTAATAAAAATAGAGTTAGAGTTATTAAGCAGTTTTAGATTATAAATGTTATTATTTTAATGACACATTCCTAAATAGGATAAGTCTGTAATGTAAAGAATTTAAGAAGAATTCACTGGAATGAGAAGAGTA------TTTTGACTTGAGAAAGAGTAGGTGTTTTTACATATTTATCAAATAATATAAACAAAAACATATGTTTGCAATCTCATGTCCTCTTTCTCAAGGACATTTTACAATATATACTAGTACTAAAATTATCTGAGTACTAACAAAACTAAAATTGAAATACTCTCCATTCAATGACAT--AAAAATAGTATTT----------ACAGTGTAATTTATTCACATATTATATGTATAAGATGGAACTCATTTAAAAATATTATGTGACCTATTCACTGTAT---ATTACAAATATACAGCAAAACAAGGTA-TTTCCCAGTTCTTTTTAGAATATTTATAGGTCTGTGAGATGAGCATTATATTCTCCACACAG--AG--GGCATAGAGCCAAGGTCTAGACTACACAGACTAAA-GTAGAGCCAT a score=27969 s mm7.chr9_random 3046812 1603 + 9745104 AAAATAACTTTTACTTTAAAAACAACAGCAGCAAACAACAAAATCCATCAGATAAGAAGTTCCTATGTGTGCTGTGTGTGTGTATGTATGTACGTGTGATTGTTCTAGTGAAAAGAAATGGCAGTCTC------------TATCATAATTCTAAAAACTGGCA---GAACAAACGAAGTAGAA-TGTATGAG-GGTACACATCTTTCTTT--------------TCCTATTTGATCTGCAAAAGAGCCACTT----------GGCATTTGTCTTTCACAAAC-AGCCTGGAGGTCCTGTTCCTTG--------ATGCT---TTTGTTTTGCTTGTCAAGTGGATGTGTTTTGCTTTGCTTGTGGGAGGTGTGAGAAAATGAGAAAGG---------AAGATCCTTAGTAGTGATGCAATGCTATGTCTTTTTCCTTCAAAATGCCACAAAGA-------------GCTTCCCTAAAG----ACCTCTCATATTTTGTGTGTGTATATATATACTCTACCCTTCCCTAGGTCCCCTATCTGACAACACTTCA------CAGAA-------------TACTTTCCAGCTGAGTGGTCATTTTGG-AGTAAAAAC-------------ATAACTGCTTTCTTATTTTACTTACTGCAAGAGTTGCCCTGTCCCGTTCCACCAAGTCTGCAAGCTTGTCCAACAGACGTCCTCTTTCAGACGCATCCATCCTTCTCCACACAGAACCAAGAGAGAAGGCAAGGCGGGCTGCTTGCACTGCCTTGTCTATATCCACCTGTTAAAGAGGAAGAGGAACAACTGAAGAGAAATACTATAGacacacacacacacacacacacacacacacacacacacacacacacacaAGCCCTACATGCTGTCATCAAAGAAATGATGCTTTGAACCTAAGT--TGGCATCTAGAACACATA--TTCATTGTTTTGCTGT-TATGGATGGTTGTTCTA---CAAAGCATCTTCTAAGCAATACACACCTTGTCTGCTTCTTGAACTTCACACACTTGCTCTCCTGTGGCTGGATTACAGACAGGGAACACTCTCCCACTCTCTGAGTTCTGCCATTCATTGTTAATAAAGATCTACAGAAGGGACACAAGAAAATGGGAT--ATGAGA--------------------------------------------------------------------------------------TCTGGGAGATCAGAAAACAA-----------GCAATATGGAGG------------------------CACCATGGT----------------------------AACACCACTTCTATTCCCT----------------------------------TACAg-------------------------------------------------atac-----------------aaacagagattctgaagtgttgaaag---actttcagaacagtatcaagttcaacctccctcctagagcaggaggaatctattcccatgacag-----------ctgcttcatccaAAGATGAAGTAGTAGGACTCTTTACTTCAGTGAACATGTCAACCAGTTAGAATGCCCTTCCATCAATAAATACAGAAAGACAAAGCATCTTGAGCACAC-----TCCCACACCAAGGCT-----AACACTAGTGGTCGTCCAATTGCTAGCCATTATCT--ACAGGGGTAAAACTCTGGGTCAAAGTGATGGTTATTCGG--------ACCAGTTTCTCTGTTGGAAG-------------CATGAGGGAATCTTTAAGGAATGGTGCTTGAATAAGTATTTCTCTAA-TTATAGTCAGCTCAATTAAAA------ATTGACTATAACTAGTCTGACTAGTAAGTTAAACAAGTCAC------AAGGCACA---------------------TGTGTTAGCAAATCCCAAGGGCTTCTAGAACTTTCAAACTGGTCT----AAGATTTTATT--AGAGGCATGCTTTTCTTGCA s bosTau2.chr10 35712494 1953 - 70001009 AAACTGACTTCTATTTTTAAAACAGCATCAACAA-CAACAAA--CCACTAGGAAAGGAAT--------GTCCCTTATGTGAGAAAAT----------GATCGTTGTAGCAAAAGAAAGTTGCTGTCTCCTGTCTCTCCTTTCTATTAATTCTACAACGTGACAAAAGAACAAAGGGAGCAGAGGTGTATGAGAGGTCTGCATCACGCCTTCTGCTTCTGAAGGATTCTCTTTGGTC-----AAGAGGGGCTCACACTGGAGAGGCAAAACTCTTCTGAAAGCCAACAGAGTGGTTTGGCTTCCTGCAGGCAACATGGTCACTTTCCCATGCT--------GGACTGTTTCTGTTCTTTTTGTTGAGGGTGGGAGGGAGAGGGACAAGGAAAGCAGCAAGGTCTGTACCAGTCATGGGAAGCTATGGGTTTGTTCTTAAAAATTCAGTAAGAAAAGACACTCAGCTGGTCCCCAAAAGCCAAACCTCTCCCCTTTTTCATGAGTTATTATGTACTC----CTTCACTTGTTCCCCAGATCTGCATCATATCATGCTTTCAGAAAGACTGAGGAATCTACATTTCAA-TGGATGGTAAGTTTGGTGGTAAAGACGATGTTTGGTGGTAAAGATGTTTTCTTAGGTTACTTACCGCAAGGACTGCCCTGTCTCGTTCCACCAAATCTGCAAGCTTATCCAACAGACGGCCTCTTTCTGAAGCATCCATCCTTCTCCACACTGAACCCAGAGAGAAAGCCAGGCGGGCTGCCTGCACTGCTTTGTCTATGTCTGCCTGTTATAGAGGAAAAGAGAGAAT------GACACAATAAAGGAAGAAACATTTGCTTTCACACACACGCAAAAAAAAAAAAA---------------------------AAAAAGGTGATAA-ATGAACATTAGTGGTGATGTCTGGAGAGCATAAGTTTAGTGTTTTGCTGTCTGAAGGTAGTTATTTCATAGCAATTTTTCTTCTCAGATGAACATACCTTGTCTGCTTCTTGAACTTCACACACCTGTTCTCCTGTGGCTGGATTATAGACAGGGAACACTCGCCCACTCTCTGAATTCTGCCACTCGTTGTTAATAAAAATCTA-AGGGAATAGACAACAGAATGGCCTCCATGAGACAAGTGACAGAAAGTCAGTCAATGGTGCTGTATTATACAAAAGTACTATAGTAATAATACTTGGTCTGCCAGTATTCTTgggcttctctggtgactcagacggtaaagaatccacctgcaatgtgggagacctgggttcagtccctgggttacctccagggttcaatccctggaggagggcatcgtaacccactccactattcttgcctggagaatccccatggacagaggagcctggcgggctacagtccatagggttgcagagttggacacgacAGTAACTGAGCATAGCACAGCATACTTGCTGGTATATAACTAaagtacagaatctgaagagttacaagaaaacctt--gatcattatgcagtctagccttaccctcaattcataa-------atttcctttatggtatttttacctcaatgtcatccaAAGATTAAATATAATG---CTTACCTTTAGTAAATCTGTCAATTACTAAGACAGTC-----------AAACAAGGAAGGAAGGAGAGTCTCACCTACATAGAGAGCATATACTGAGGCTGAGAAAGTATTTATTATACTCCAGGCTCTGGCCAATACCCCAAAAGGGGTAAATCAC-GGATCAAACTGACAGTCATCCAGCTTAAGCTACTAGTTTCTCTGTCAGAGGCCTTAAGTGAGTTCACAAGGAAATCT-----GAATGGTGCTGGAAAAAGTATTTGCCTAATTTATAGTCAG---AACCAGAACACAGCAATGACTTTGACCAAACCAACTGGTGAGTTGAACAACTTACCCGTGTAAACCCCAGTTAGATCTCTTTCCTTTTGCTGGGTAGGCAAAGGGAAAAGGC--CTGTAACTTTCCAATTGGTCTCTCCAGGATTTTTCTTAAGAGCCTTGGTTTCTTTATA a score=152534 s mm7.chr9_random 3054037 5229 + 9745104 ttataaagtctttatatagttttggtatttggataatgatagccccata----aagtaaattaatgttcccctcattctaccttccagaatagaatgctaagaatg-------------------------tatatgtttgata------------caaaacatctggatttaatgctttt---------aagtttattaattaccagctcaatctcttggatacatctag-gttatttaaatt---tatttttccctgtttaagttttggctgaatacaactttaaaagaatttgttcatttcatttatgttatcaaatttgtgggtccacatctgttcataatacttttat----ttcttttaatttttaaaatcatacttttaaatgtatctttttttcgttcctaatat-agtaatttggattttctcactt-------tggctagcaggactagaagtttggta--cttactgat-ttttaaaaaaat----------tttagttcctttctgctat----------------------ctcttttttaaaatgattt-----------tcttctgtttagtctagacttacatagttcttcattccttggcttcataaaacagaagcttaa-----ttttcttttaatatatacattccatattat----------------------------------------ttttgat--gctttatttgtatttagttcaaaatattttcactctctcttgagatttttccattggccctggtgtactttagagtcatgctgtttag----cttccaggcattacaaggaagtgagactgaacagctatctttctgttct--------agttcaatccctctgcagtctgaaagcatattt--gtcttatttctagtgtttggaatttgttaaacggtgtct-gtggtcctggatgcggtcca-tcttgcgggctgttctctgagcA-----------------------TCCCGCTGGGCTGAGTGGGTTAGCTTACTGTTCTTAGAACTAGCACCTGTATTTGCTGCTAGAGAAAA-TCTAGCTTTTGTGATTTTCTTTAGCTCTCTG-TTCATTTTTAGAGTGTTGTTCT--TTGTCCT---TATTAAAAGTAACAGCTATAAGGATATCTACTCCTAGTATTTCTCTTTCATGTTGTAACATTTCATATGACAACAGATGATTATATACTAACATACATAATAAGGCAGAGACT-GAGAACaaagt----------------gtctttagaaatgccatgattatttatgttgaaatttctaagaagtctacaaaaa----caggatagta-aatttaacacagttttagcatataagattaatatatgattgacatactatgaaaaatccctggaaactgaaatttatatatatatatatatatatatatatatatatatatatatatatatatatccctacacacaaacatatatataCTAGTAATGTACATATATGCACATTTGTACATATTTGTCCAAGTTGCACTGTGACAGAAACATATAGGACATGCTTTCCTTCATTGATTAAATCACTCTCATGTCA-------CTATTTCCAGCAGCAACTTCTAACCTCCCCAAACACAGAAATTAAAAAGTACTTGCTTTAAAAAAAAAGTCTAGACATGAAAAGCTATGGATCATGATTGCAATGCAACGACTT-ATAAGATTAAGAGATCTGCACAACTCTCTCTAACATCCTCCCCTGTCAAATAAACTGACAAGA-CATAAATAGCGTAAGTTGGAACTAAGGAGGGTGGGAATAATTAAGAAAAAAATTTATTCTAAAGAAAAAGAAAGCCCTATACAATCTTTATTAAAGG--------AAGCCCGAACTTGTTTGTAAGTACTACTGAAAACTCAAAGAAGATGTATCCTCTACTGTTCTGGGACTTATAATAATATTTCACAGATGAAACTGCTTTCAGGAAAGTTAAATGATGTAAGGCATTCTGTGATTTAGTGCCAAGATGGACAGCAGAGATAAGCATAGCAAATGTTCTCTACAGAGAAGGGAGGTATTGGGCGATGGTGTGG-CTGAAATGTTAGAAGAATACTCCAGG-AGACAAGAAATAACGAGGGAGGGTGACCTGGGGTA-GGCAGGGAA--GGTAGAAGACAGAAACTCTATCCCTAATAAAATGATTCCGCTGGCCT-GGCAGGCTCTCTTT---GATTACAGCCCCCTTCTGGGGACCATCTGATATCCTTCCAGGCTCAAG---TGTGGCAGA--GAAGAAAGGCACATTTAGCTTTTCCTCCCACTGCC----------AAGTCC-CTGGTCCTACAGAAAGCTCACAGGATTGAGCTTCCTCTGGCTCTTCAACATCATCCCCTACCACAACACCCTCCTCCTCAGGGTAGG--AGGTGAACGCAGAGGGGAGCAAGGCTCAGGAATCATGGAAATCCATACAAACAATAGCAAGTACATCTAAAACC-----ACATGA-----GAAGCAGCCAGTCAGA-GAAGTAGGAAGCCATGCCAAAAGAGAAGCAAATTTCAGGTTTATTAATTAATCCCACATTTATAAAGAACA-------AATGGGGTGAAAA-TATCATGGGAGAAAAAAA-----GATGTTTCCAATGATA----CATAAAGTCACTAAAATAATGCCAGAAAAAAATTTAAGTATAATGAAGTGGCCCCAAAACAATCTCCCGGATTTGATGTTGTAACTAAATGAAT-AGAGGAGAAACTCATGACTTAAAGTCGAGGAAACAGGGAGATAGGAAATACATCAGGGCAATACATGACTAGGCGAGATATTCAAGAGTGAGAGGTGAGGAAACAGACAGAAAGAGGGAACACAATGATAAAGAGATGTCACCTCCCAGGAGAACTCACAACATAAGCACTGACATTCTGAATTGTTTCTTTTCTCAACATGAAAATCTGTTTGTGTTTTGTTTTTGTTCTTTTCTTTTCTTTTT------------------------------TTAAAGCAAGACCAGTCAGCAAACAG--AGAGTCTGGAACATGAAAACAAGCAAATAAAAGCTGTCAGGCATATATAATAATCATGCTATGAGAACTCTTAATTTGTTGTAGGCTTGAGTCAAGCAGGCCCTTGGCTTCGGC-AGTCTTTGCATTGTGTTAATACTCTCCACGGTGAAGGAGGAGCTGCA--------GGAGTATGCTCATGCTTGAGTAGTGTCCTATTGATAGTTGCAAGTCTGTGTCCTTGGTCCCAAAGAGTCTGAGAAGCCATGCAAAGACATGGAAAAATAAAGACCAGGAGCCAGACCCTGGCGATCAGAAGTCTTACGCTGCATGTAGGCAATGTACCCAAAGGACATGGGGGTCAATGGGACTCAGAAAATTTTTCTTTCTTCTTCATAATTCCTAATAAATCTCTATTATCATGAATAGCAATGCCATCCTGCCCATGTTTCCTAGTTTGTTAACCTTAGAATTTTCCTATGTGGCCTCTCCTCCCATTTTTCTTTTCTAAAAATCTAAACACAGTTGAACTGGAGAGGCTGTGCCTCTTAGC-CATGGGCCTCTATGGTCTCTTTTTATTAGCAGGCCTTGCCCTCCCCCTTCTCTGTGCTTCTTATCtctttcaccaatatttgttgagtgtctactctcttctagacaccatgcttgctagggTCTCCT-AGGTTT----GTTTTCCTTCTTCTCTAGGCCAAGGGCATTATGTCTCTCAGTCTAAACACATCTGTCTACCTTTGGCATATGGTCCCATCAGTA--AGAGGGCCAAAGAGGGTCTTGACTCA-CCATTCCAAGAGACAAAGACCAGGGCTTCCATATCCA-CATCAAATCATATGCAAATGATTGTT-AAGAGGAAATAAATGACTCCTGAGACCAAATCACTTATAGAAAGCAGGCTTGGCTAAAACAAAACCAATTATGTATA-----------------CTCTACTGTCCCATAATTCC------TAACTGTGCTACTTGCATCTGCTATACTAAAAATAGTAAGACACAGTCTAGTGG-----GTGGCTTTGATAGAAGCTGGTTGGATGACAGCATCTGGGACTCTGTT-------GGAGCAACATGGCATCAAAGCCAAGCACACACACCAGTATCAGTTGTGACATAGTTCCAAACTGGAAGAAACTAGACTCGCCATCCGTCCGTCCGTGTTGCAGAAGGCAATGGGAACTGCTACCGGTCCTGGTTAATGTTCATTTCTTCCTGTTCCACTTTCTATAAACAAGGTAATGCCTATACAAGCTCATTACTGTAAACTGAGCACATTTAAATTGGTAGTAAAACCAGAGTATTTACTCTAGTGCGTGTATAAAGTGCCTTGTCTAAGGTTTTGGAAATGTTTCAAGTTTTGAAACCAAGCAGCTGGCAGCTTTACAAGCCAAACCTTACACTGAAATCCCTCACTCTGGAAAGTCTTTTGGTGTCCCGTGTCAGGTAGTACCATTCAGCAGACATCCATCTCCTCCCGCCCCTTGGATTCTTTCACCATAAATTTGCATTCACAGGGCTCTTATAACTCTTGCAGCACTCCAGGCTCCAATGGCTGTTGATTAAATGTATGTATCCTGTGCATTCAATCTGACTTTCATTATGGTCACTTCGTAAAACCGCCATGGGCTGGACAAGCGATGACACATAGCAAGAACCTGGAATCCCTGCAAAGTCTCAGATGAGAATTTTTTTTCTCTCTCTCTCCCTCCCTCTTTATTAATAGTGACCATTTAGTGGCCTAGCTCTAAATCAGCCAGCGTATTTGACAGCAAATGTTCCTATCTATGGATTATATATAACCCGTCCTAAACACCAGATGAAAAAGGGATAACCCTAAGAAAGGAAGGGCTGGCTTCCATGTAAATCATGTTACAAATTGGACAACACCCAGAGAGTTCATTGTTCGCCCTCAATTGTGAA-GGCCATTCCCATTTACTATTCCCCTGGAATGGATGTTAATTAAGGCCGACTGAGACCATAAATCACCCTGAGAGTTTTACAATGTAATTCAGCATTAAGCATATGTATTTAAATAAAAAGTAACTGATTAACCACTAGTGCTTTTCCAGAAGTTGCTGAGGCCATTTCTTTATAATAGAGGCATGTCACTTTTCATTTTTGT--AGGGAGAAAATGAAAGAAGTATTATCTTCTTTAAAAGGTAACAGTTAGGATACTTAAGGGATCCATGACACTGTTTATTATGAGAAAGAGAGGAACTGAAAAGAATGAGGGGAAAGGAGAGAACAAAAAG---GTTAGGGGAGGCCGTTGGCACCTATTTCTTATCTCCTTT---ATCATTACTCCTTT--TGGTC-caagcatttactatgtgcatctactccatgttaggcaccacgctaggcactggTG-CATAAGACTAA---------CCTGACTCTCAACACGATGTGTGTAGTGCCGTGGCTGGGGGAGGCCAGCCCCGCTGTTGCTGAATTAATGCAGTGT-TTAGCAACACTTAGAAGGATTCATTGAGTATCTCCTATGCACCT s bosTau2.scaffold3844 25663 5049 + 74535 ttgtaatgtctttg----gttttgatgtcaggatactgctggtctcaaataataggtaggcaagtattctctcctgtttaattttctgaaatttatg-tagaagtggcattattttttcctattttatttttaaatatttgctagaattcaccagcaaagacatctgggcctgaagctttctctgtgagaaagttttttagcaacaaatttaatttctttaataaatacagagtgattcaaattatctatttctccttatgtgagctttagtagaatgtctttttaaaa-aattttcccatta-------gttatcaaatttgtgagcacagagttgctcataatattcctctgttatccttttaatgtccatgat--------------gacttctctgtcatttctgatattagtaatttgtgtctcctctcttcttatctttgttagtcgggctggatatttatcaattttattgatcttttcaaagaaccagtctatggtttcatttatttttgctattgtttcccagttttcactttcactgatttctggtataatttattattatttttcttctgcttaacctatgtttatattgttcgttttttat--gtttcctaaggtagaagcttagactatttattttctaatatacatactcaatgacatatatttccctctaaacactgctttcaatgcatcccaccaattttgataagttgtcttttcatttagttcagaatatttttaatttatcttcagacttattctttgatccaagtgttgtttaatgtccaaatatttggggattttccaggt--------------------------tatcttttggttattaatttatgatttaatttcactgtaatctgagagtgtatttttatatgatttctacactttcaattttgccaaagtgtgtcttatggcacaggatgtgatctaatttggttgaatgtgccacgtgaacttgaaaagaatatgtatattgctgttgctggaCAGAA--ATTTATTTTACTATTCCTAGAACTAGTATTGGCATTTGCTTCTAGAAAAAAACCCAGCTTTTGCATTTTCCCTCAGCCCTTTGATTAGTTTTCAGATCGTTCTTCTAATTATGCaatatattaaaaataatatatGCAAGGATAGCTGTTCCCACTATTT--------------AATACTGCA-ATAATATCTGATG-TTAT----------------TAGGCCAAAAACTTgaaagtaaaattggtaatattttctttattttcagaa--gacatgattgtata----gagatttctgataaatgtaccaaaaattacagga-agtataatttagcacattcccaggatacaagatcaGCAGGCTATCAACA----------AATCATTGGAAAATGAAATTCA---------------------------------------------------------------GTACATATAAT-----------TACATACACATTAATTCGTACAAGAGCTAGTTGCATTCTGACTGAA-------GGAC-------CCTTTA--GAGTATGACAGTTTAAAGCCAGAAGCAGAAATCCTGGATAGCAGCTATTACTCTTTTAACTGatataaatt--------------ttaaaataataatCTAAA-----ACAGTTATGGCTCTCAGTTGCAATGCAACCACTTCATAAAACTGAGAGAGCTGCTAAATCCTCTC---AATTCTCCTCTGTGAAACAGGTTTCTTAGAACAAAAACAGAATGAGTTCAAACTACAAGGGAAAGGAATAGCTGAGTAGAAATTTGACTTCACAGAAAAAA------CTGCAAAATGTTTATTAAAGGCCTATGCTAAACATGGAGATGTTTGTAGGTACCACTGAAAATCTACAGAAAACGTGTGCTCTGCTGTCCTGGAGCTTAAAATCGTGTTTCAAAGACAAGATTACTTTCAGGAAAGTTAAATAATGTAAGGCACTCTATGATTTAGTGCCAAGATGAATGGTAGAGATAAGCACTGCAGGAGTTTGCCTCAGAGAAGGGAGATATCGG-------TGTGGGCTGACATGTTAGAAGAACACTTCAGGGAAACAAGAAATAATGAGGGAGTATGACCTGGGGTACGGCATGAAAAAGGTAGAAGAAAGAAATTCTATCCCTCATAAAATTATTCAGCTGGCCTCAATAGCCCCTCTTCTCAAACGTCAGCTCCTCTC-AAAGATTATCTGATACCC----AGGTTGAAGATATGTGACAGATGGAAGAAACCCAGGTTTAGCTTCTCATCTTCCTACCTACAGGTCACAAGTCCTCAGACCCTACCACTAGCTCCAGTGGTTGAGCGACACCGGGGTTCTCAGCATCGCCCTCCACCATAGCA---TTGTCTTCAGAATAAGCAAGGTGCCTTCAG------GCAAGC------ACTCACGAAAATGCAGA-----GTCAGTAATTAGGTCAGAAACTCACAAACCTGACTAGTGAAATAG--AATCATATAAAGAAGGCAGTCATGAGAAAAGAGAGAAGAATTTTAAAAGTATAAATTAATC--ACATTTAAGAAGAGCAGCAATTAAAAGGAGTGAAAAATACTGTGGAAGAAATAGGATGGGGAGACTTTTAAAAATAAGGCCATGAA--TATTAAAAAAGTGTTAGAAAACA-TATGTTTATTTTAAA--------AATACAGTTCTCT----------TTGAAAAAAAGAGACTGAGACAAATAAGCCTTGACTTCATACTGAC-AAACGGTGCCCTGAGAA----------GGGAAACAGGATGAAGGGAGA-----GGAAACAAGGGGCAGGGAGAGGACCCGACAGGGAAAACA-------GAGGGGAGCTCACCTGCCATGAAAGCTCA-GGTATCAACACT-------TGAACTGTTCAGTG---CAGGATGACTAGCT-----------------------TTCTTTTCTTTTTGCACCACGAAAATACTGGTAGAAAAAGCACTTAAAGCAAGACCAGCTACAAAACATGCACAGTCTGGGGCATGAAAACAAGC----------TGATAGCCATACAC-----TTGTGTCATCAGAAGCCT------GCTGTTTGCAGACATATACCATGCTTGTGGTTCTGGCCAATTTCTGCATTGTGCTAGTATCCCACACAATGGAAAAGGAATTATACTGTACGGGAGGTATGGGATTCCCTGGGTAGCAGAATCCAGATACTCATAACTATGTGTATTTGGTCCAAAAGGTTCTCAGAAGCCATGCAAAGAAATGCAGAAATAAAGACAAGGAGTC----CCTGGCAATCAATAG------------------------------------------------GGACT-------TTTTTGTTT---------------TAAAAAGTCT---------------------------------------------------------------------------------------------------AGTCTAAACACAGCTGAACTCATGAGGATATGTCTCTTAAAATATGGGTTCCCATGCTCCCTTCCTATTAATCACCCT--CCCTTCCCTTCTTCC---CTTCCTATCtcctccaacaatttttattgagtgcttactct-----aggcattgtgttcactggTGCCTCCTTAGATTTCTATATTTTCTTTCTTTTCCAGGCTGAGCAAATTATGTCTTTCAGGCTAAATATATCTGCC-------AGTATATGATCTCAAGAGTATGAGAGGGCTAAAGGGGTTCCTGTTTCAGTCATCCTAAAAGACAAAAGCCAATGCTTCCATGCAGAGCACCAAAACACATCCAGATAATTTTTTAGGAGAAAATACATGACTCCCAGTACTGATTTGCTTGTAGAAAACAGATCTGGCTAAAATAAACTCAGTTTTGTGTAATCAGGGTACCTACCTACTCTACTGTCCCCTGATTCCCATATCTAAGAATACCGTTCTTATCTGTTTTAGGAAAAATAGTAGGAAACAGTCAACTGGTCTGAGCAGCCTTCTCAGAGCCATATTGAATTACAGCATTTGTTACTCTGTTATGTGTTGTAGCGACATGGCATTGGAGCCA--CATACACATCAATGTCAGTTGTGACATAGTCTCAAATTGGAAGAAACTGTGCTTGCCATCAGTG-----ATGTGGCAGAAGGCAATGGGAATTGCTACTGGTAATGGTTAATGTTCATGTCTTCCTGTTCCACTTTCTATAAACAAGGTAATGCCTATACAAGCTCATTACTGTAAACTGAGCACATTTAAATTGGCAGTAAAACCAGAGTATTTACTCTAGCGCACATATAAAGTGCCTCATCCAATGTTTTGGAAATGTTTCAAGTTTTGAAACCAAGCAGCTGGCAGCTTTACAAGCCAAACCTTACACTTAAATCACTCACTCTGGAAAGTTTTTTGGTGTCCCGTGTCAGGTAGTACCATTCAGCAGACATTCAT---TCCCCACCCCTTGGATTCTTTTGCAATAAATTTGCATTCATGGGGCTCTTATAACTGTTCCAGCACCACAGACTCCAATGGCTGTTGATTAAATGTATATATCCTGTGCATTTAATCTGACTTTCATTATGGCCACTTCATAAAAATGCCACAGACTGGACAAGTGATGACACATAGCAAGAACCTGGAACCCCTGCAAAGCCTCAGATTAG--CTTTTTTTCTCT------------GTCTTTATTAATAGTGACCATTTTGCGGCCCAGCTCTAAATCAGCAAAAGTATTTGACAGCAAATGTTCCTATCTATGGATTATATATAACCCGTCCTAAACACCAGATGAAAAAGGTATAACCCCAGGAAAGGAAGGGCTGGCTTCCATGTAAATCATGTTACAAATTGGACAACACCCAGAGAGTTCATTGTCCAGCCTCAATTGTGAAGGGCCATTCCCATTTACTATTCCCCTAGAATCAATGTTAATTAAGGCAGACTGAGATCATAAATCAGTGCGGGAG-TTTAGAATGCAATTCAGCATTGAGCATATATATTTAAATTAAAAGTAACTGATTAACCAC-AGAGTTTTTCCAAAATTGGCTGAAGTAATTTCTTCAC-GTGAAGACATGTCACCTTCCATTTTTGTGAAAAGGGGAAATGACAGAAATATCTTC----TAAAAAGGTG--AATTAAGGCTAGTAAATGACTCATGACACTAGTTATTGGGAGGAAGGGAGAAGCTGAAAAGAA--AGGGAAAAGAAGAAAAAGAAAAGACAGTCATGTACGAAGGTGAATGCCTTTGTTCTATCTCCCTTGAAGTTATTAATGTTTCCATGTTCacaagcacttatta--tgaacctactgcacggaaggcact-tgctaggcactggagatacagaaataaatagttagcccccgctcttgagatga-gtgttcagcaatgcag-tggagaagaccaacacaacaacagCGCCAGTGATATGATGTGGTAACAACATTCAAAAGTAGT-ACTGAATACTTACCATATGCTT a score=21259 s mm7.chr9_random 3059750 1232 + 9745104 AAAATGATATGTTTTATATTCAAATTGCATATAATAAT--ATCAGAGGGGTAACTTGTGTGCTTCCTTGAAACCCAGCCAAAGCAACCACATCTGCCTGTCAGAAGC-AACAGGCCATTCTTCCGGAGAAAGCA----------------------------TCTTTGAGTGCACAGCTGAAGAGGCAGGACTACT----AAAGCACACGTTCTTAAAGAGCTGTGCT----GGGAATCTAGACATGGTTGTGACTACACTTTGAAGAGTAAAGCAACCTGAAGGAAGAGAAATAATAATAATAATCCAGGAAGGCACTTGGTTTTAGTATGAAGTGCATGGATAGTAGAAATTCACACAAATAATCCAGAACAGCTAGTAGAATTAGTTACCCAAattgtactgagaactctcactatctcactcgatttagatgtcaaatctgtgatgtaggcactattttaccttctcatagaataaacaatgatttgtgtttcaagcccaaactcatgccacaggtaattcccagagcaaaaacttgaaggtaggtctgttga---------caaagctcTCTCCAGTCTACTCAGCATTCCTGG--ACTTCCTCCTTTTGTTTGCCAAGCTGATACTTTAA---AGAGATCTGTGTTCTGTTCAGCCA-AGGCAGGAGAAAAATCATATAACTAGTCAATTCACTGTAAAGTCAAACATAAAACATGATT--ATCAGGGGAACACTGG--AATCTAACATTTGCATACATAGGCTGTACGGGCATGGTTCTAGATACTTTA-------------------TGCTCAGGGGTGCCAAATGAAATGTG--------TCCtttctgttctacagatgaggaagttgaggctcaggaatgtaaagaacctgccA-GCATCTAGGAGCGAAATGGATCTGGAGTCCAAAAGCTGAGCAACCAGCTACCTTCCGCTCAGTGCAGTGTGGTAC-----TGGAAATGGCAGTAACCAGTGT---------GTCTCCACCATGCTGCATAACCTGTGAGTAGC-ATTTGTACTGTCCTAAGCAATAACCTCT------GTGTTTCTTCC------------TGTTTGAT----CTGTCCCAGCCAATCCTTCT-------CCTATG------------------CCTAAGCCAGAACGATGC----AGAAGAACATCATCTC-----ATGCTGAACTCCCAACACTATA----TTTTCTATCGAGCACGTGTTCATACCTAAATAT-GGTGGGAGTCGGTGCCTCTGGAAAGA-ACCAGCAACCTTGCATAAACCAATG-----------------------GGCAGATAGTGCCCTAAATCCTGCAGTCTTAAGCTCCTC-----------tctaaatttattcaactgctactacaaaaca s bosTau2.scaffold3844 30714 1367 + 74535 AGGATCAGataatttatattttaattttataaaaCACTGCACTGGACAAGTAATTTGTGTGCCAAAGAGAAATCCAACCAAAG-AGCCATGCCTGCCTGACAGAAGCCAAGAGAACATCCTTCTAAGGAGAGCACTTGGGCTTCATCAAAGAAAGCACCAGATCATCAAACCCTCAGCTGAAAAAGCAGGACTGTTTGATAAATAAGTCCTTTTCCAAGAGCTGTGCTAACAGAGCACATCTACACTGGCCCAGCTATATCATGAAGACCAAAACATCCTGCAGAGATCGACAGAG------------GGGAAGTCACTT-----TAACTCAAAGTATATGGACAATATACATTCAAA-AAATAACTCAGA-TGATGAACATTATTAGATagccactgtttactgagcatcttcactacttcacttaatctatttaacaaatctatgatgtaggta----ttttccttccagaaaagtaaactaagatttatgt-------ccaagtaaatactgcaaataactcacagggcaaaaatttgaacctaagtctcctgaagttaagtacagggctttttTATGCCTGTT-AACATTACTGGTTGTTCCCCCATCCTCTCTGCTAAACTATAACTTTAAGTTAAAGAGCTGTCTTCTGTTAGGCCAGAGGCAGTAGAACGA--ACATAATTAGGAAATTTACTGTAAAGTCAGAACTGAAAACCAAATGGATCAAGAGaataataatcaaagttaaatgtgagtgcttatatgttccaggcactgtttcagacactttacatgtagtaactcatttaatcctcaaaaatatcacatgaggtaggcaatgccatcattcccatttcatagatgaggaagtagaagctcagagatgtaaaggaactggcgcacagtaagggatgcagtggagtcgggatccaaaa-ctga-----------------------tgcagtctggtaccTACTTGTATGTAACAG--ACTAGAGCTCTGGGGCAGTTTCCTTACTGCTGCATAACCTTTAAGTGGCCAAGTGAACTGtttaaa--aataaattatttaaaaatGTTTCTTCCCAAGAGGTAGCTTCCTTCATAACTTGGTCCTGACCAATCTTTCTGGTCTCATCTCTGGCCATTCCTCACTAAGGATCTAAGCCAGAATAATATCCATAGCACAGTACCATTTACATAAATGAAAAACAGACAAAATAATACTATTTCCCCATCAAGGATATATCTGTATCTAAACATAGGCTGGAATGGATGCTTGTGGGCAAACAGGAGGAGTCTTGCACAGACCAGTGTCTTACGGTGTGCCATCTAATGAGGAGTATAATAATTGAAAATCTGTGGATCTAAGTTCCTCCCTAGTGACTCTCTAGACTAAAACCACACCTAATTCTAAATA a score=32908 s mm7.chr9_random 3061245 2870 + 9745104 tgggttgcaa---------------cataaaa----aatttgggagagatatagacattcagacaatCTATTACTCTCAGCCCTCCCACATTCCACACTAAAACTACAACAATTCTTTAACAAGATATGAACTTTTATGAGCCAGGATATTTGACCA---TGCCACTCCCTTTCTTTACTTGTTAAAATATTAAAATAATGGCACTCTTTCAAAACGCAGTTCAACTACAACCTCTCAGAAAAGACTTCCCAAGATCCTCTGCCATCTGCTATCTATCCATCATATTAGCCTGTGATACTGTCACCCATGTTCCTACTTTTCTGTTTGCTCCTTAAGGACAA---CTGCACCACTATGCCATCTTTATTTTTATAGCTCT-----CTGACACTGGAACTGTGGCCTTCGCAGTTGCTCAATAAAAGTTTGCTCTGTGCTGATACTGCATAGGTAGCAAGTCCTTCTTT----CAGTAAGAACTAGAAAACACCCTTCAAA--------GACAAGGTTCTTA-GACTCCTTAGACTCACTTTGA--------GAGGAGCTG-TCCCTTAGTCAACACTGAATATCATCTCACCTTGCTTAT---TTTCCCTTTCTACCTTGTCTGAATTCAAAGTCCTA--------CTTCATGGCACACTATTAGGATACTTGTTTGTGTGTTTCTTGT-----CTAAATTAA-ACAGTTTTTAACCAGAATATAATTTTAGTATCCTAAAAACAATGC-------CAATATCTTG----TCATAGCCCTT----AGGAACAAAGGTGCTTCGCAGGCT----------CTCTGCAATCC----------------AGCCTAGGAAGCCGAGTGAGAACGCATTTCCCACAGCTAACCACTAGTGACTGTGCAGCATAGCTAGTCCACATTTTA--ATTTCAACAGACTGT---CAGAGTTTATATATAAGGAGACATTACTTT--CTGTGAGTATTTTCCTTGATAGCATTGGAAGTGTGTGTTGGGAGGAGAAGCAGAAGGAACAGGGAGAAAGGCTGCTGGTGTTCGAACCCTGGCTTTATGCTAAATACCTAGCAAGTGACTTGCTAGACACTTTTCTAGCTTTCAGTGTTGTCTTGAGGGTCTCAGCCTTGGTAACCAAAAAAAGGCTCATATATGACATCTCTGACACAAACC---CGTCCTGCCCCTTGACAGACA-------------------CTTCCTGGATGAGTTTCTGGGG----TACAGCCTGAAAAGTATACTTTAGGAATCTCCTATCGACAAACTGAGAAACAGTGCTGTGATCGAGTCCACTGTCATTTCCACTGGCCTTGCCATTCTCGTTCATTTA--TATCTGAGGTCCAAAAGAGCAGGCACAA-----CACCAGCAGGTGCCTGGTAAGAT-GCTCATCAGAAGTTGTGATAAAGCACAAT-GCTCTGTTCCCTCCGTGAGCTTGAAC----ATTTCACAGCCATTTAGACAACAGCTGCTGAATTCAC----------------TCACCTTCTGCATTCACAAGTAGCTTGTACCATGTTCCCATTACAGCTAG-GTTTTAATATGTAA-TGATG-ACTACAAAGACATCAT--AAAGAATAATACAATTTAGGTAG----------------AAGGATCCTAAAACCCAAGC-----------------CAGCTGGGACTCTGTCTCATACTTCTTCCAGGAAAACTGGCTTTGGTTTCC--ACTGTGTAACCAT-CTGTATGGCAAACTAGTGCTTT-GACAGCCAAGCCT-ACTAAAGCTTTATTTTAATATTTACTGCTGAGT-----ATCTTTGTCT---GACCTGAATATTAATAGAAGCTGGGTTTGGCTATGAAGAGACTG--TCACAGAGCTAGAAGGGGTCTTAGACACAACTTACA----------TATTCATATT-------------CCAATAACTTGTTGATGGCTG-AGTGCCTGAGAGTGACACATCAGAAGCCAGAACCACCATGCTCTGATTCCCACGCCAGTGTTTTCCCTACATTTAATTTTTTCCCATATCAACTTGAAAAGCCAGCTGGATAGCCAGTAAGGTACT-TGAGCTAGCCCTCCCTGCTTCTTTTACAGGGTTTGTTAGAAATCTTGATATAATATCTTACAAATTATTCAGCAGAAGGAATTTTACTTGTATCTAAGTCCCCTTTTCTTCCAGCAAAACCAGTAAAGAGAGACAGTTACCTCACATTTGGCACTTTTCAATTTT-----TTAAAGGCACAATGTGTTGAGGAAACCCT--TGGCTTACATT-----AGGACATGTGGCACAAGTTTAAATGAGATGCTCGGCCATTTCCATCAGTGGTGTCCTTAGGTGTAGAA-------CTTTTGCCAGGGAACTTCTGCAGCCAGACTATGATGAGCCTCTGATAGCA---CTTTTTTTCTGGGTTTCTTAAAGAATAGTT-GTGTGCTCTTAAAACTATG----CACATCTACATAGCAGCTACAAGGGAGACTTCAAAAGCAAGCT-TATCCCAATGGCTTGGAGCAGAG-GGCTGGCTTGGGATGAGCAGAAGGAAAGGGGAGTGTCCAG---TGACTGCTTGTAGGAGCTG-----------ACTATATCTGAGTGAGTGAAGTGCCTTTTCACAC-TCCCTTCCTCTGCAGAGTCTGGGTATCCAAGCTGAGCAAGAGAAATTCATCAAT-TGCCAAAGTGTTTATGAACTAGTCACAGCTGTTTGGCAACAGTTTCCCTTCCTGGCTAAGAGCATGAAAATAAAAACTCACGCTGGCACTTTACTAGAGGCACTACATAGAGAGCATCTGAAAAACTCTGTGCTGAAGTCTAATTCCCTTCTGTAAATATTTTACAGCATCCTAGA-TGCTCAGCACCTGGGAAGGAAATGTCATATAAAATACTTTCCTCTCTCAGAAAT---ACCATCTTCCCAGAGGTATGCTTTCAGGAAGCCTAACAAGGACAATGAACCATAGCAAACGCTTCCACCAATCAGA-GTGGCCCTCCCCAAACCATAAAGGAACAGACAACTCATTGTCTCCAGAAGAGATGTTCAGATATGCAAGTGGAGAATATGGCTGTATTACTGAGCTAACACAACAA s bosTau2.scaffold3844 32370 2839 + 74535 tgggttgccatttccttctccaatgcatgaaagtgaaaagtgaaaggga---agtcgttcagtcg-tgtcggactcttagtgaccccatggactaca----gcctaccaggctcctccatc----catgggattttccaggcaagagtactggagtggggtgccattgccttctccagcctagtatcata-------------------------------------acatcct-----aaaatatttt-----atccctggtcaaagg-tatctgtcca---------------------------------ctactaaactgatccctccttaaggacaaatactatgtcactatgtcatctttatttttgtatctccagtacctagaaaaggaacagtgaaat-agtagttgctcaataagtgttAGGTATGTATATGTATCATATGAGAAAGAAGTACTTTCTTAAAACAAAAAGTAAAACAATATATGTTTTGAATTCCAGGAGTCAAAATTCTTGCAACTCA--AGAATCATTTTCATCTATCCAGGGAAGTTGGTCCCTCAACTGACACTGAGCAGCGTCTCACTAACACCATATGCTTCCCACTCTTTCTTGTTTGAACTGAGGTTACGATAATCAACCTTCAT---------CCAGAATATGGTTTTGGATACACACTGTGACCACTGAGACAATGGAGTTATTAAC------------TTA----CCTAGGAAGACTGCTGTACCACAGTACCCTGCCAGTCAAAGTGGTTCAGAAGGAACTACTTTCCTCTGGGGCCTGGGGCCATAACACTGGAATTCTCTTGACTGATCTGACACCTGCAGAACCAAACTGGAATTTCAGTCTCCTCCTCTGACCACTACCAATTATGTAGTGTGGCCATTTTATAGCTCATTATTTAGGCTGACTACACCTAGAGGCTATTTATAAGAGGACACTACTTTAACAGTCC-TATTTTCTTCCACAGTG----------------------AAAGAAGGAAGAATAGGTGAAG----TGCTTGTATTCTGGTCCTAGTTTCACACTAAACTTTCAGCATGT--CTTAC---AC-CTTCCCCAGCCTTC--TTTCATCT--AGAACACCAGACTTGGTAACCAAAGACAGGCTCATCCATGGCACCTGTGATACAAATCTTCCACCCAGCCCCTTAACAGACATTCATAATTTACTGTGACACTTTCCAGCTGAACTCCTGAATACTTTTCAGCATGG------CACATTAGAAAGCTAATACTAACTGAATGGAAGA---------------------TGCCACCTCTAA-GGACTTCCCAGTTCAGATACTCTGCCTATCTGAGGTACA----------CACACGTGTCCACTAGTGGGCGCTCAATAAGAGAGTTTATCAGAGGTTCTGCGACTGCAGATTTGTCTTACTCCTTCTCTAAGTGCATGCTGGTGTTTCATAACTACTTGAATAATAGTTAATAGATCTCCATGCCCATAAAAGAGTCCATCCTCCAGGTTAA-AAGTTACTT----CCTTTTCCAATTATGTCTAATACTCGAATATGCAACTAATGTACTAGAAAGATGTCATTTGAAAAAAAGTA-AATTTAGATGGGAAAAAGTTCTATAACAAACATTTTTAAACTCATGCAAAGTGACCACCAAGAACAACTGGAAATAGCCCGCTCACCCCC--------AACTGATGTTAAGTTTCTTACTATGAAATTATGCAGCATGCCAAGCTCATACTTTTGATATCCAAGTCTCATCAAAGCACTATTTTTAAATGCACTAATGAATTAACACTCTTTATTTTTTGGTCTAAATAT-AGCAGAGGCTGC-TCTAATGAGGAAGAGAGAGATTCAAGGAACC-GAAAGGGCCTTACATACAATCTATACTGAAGGAAATTGTTATATTGTCAAaaaggagtccaatgactggcccatggtcatacagcccattagtggctgaacggggactggaatc-caatatcctgatttccagcccaaggcttttgctaAATTTAAATTTT----------GTTTAGAAAGCAGATTTGATGGTTGACCAGGAAATATAAGC-----------ATCTCTTCCACAATGCCT----------------------CTTCAAAATGATTCAGCACAAGGAACTTTGTTTGAGTCT-------TTTTTCCTTCAGCACAATCAACAAGGTGA--CAGCGA----------AACACTTTTTCATTTTCCTTCTTGAAGGCA-AATGTGTTAGGGAAACAATGGTGGTTTACATCCCTAGAGGAC------TCCACTCGGAGGTGAGATCCTGGGGAGATTCT----GCATTCTCCTCACCTGCAGAAGCAGCAACTTCTGCCAGAGGACA---GCAGCCACGCTACTGTAATCCTCAGATAGAAAATTATTTTCCCGAGGCTTCTTAAAGAAGAGTTTGTGCAATTTTACAACCATAGGGCTATATCTG---AGGGTCCAGGAAGGGGACTTCAAAACCCATCCCTATCCTAATGACTTCCCACAGAATGGCTAATTTTGGATATGCAGATGAAAAAGGAAATGGCCAACCTTGCCTGATT-TAGGGGCTGGTTACAAGTTCACTACATCAAAAC-----AATTCCTTTTTCATATGTTCCTTTCTCTGCCAAATCTAGGTATCAAAACAGG------------CATCAAAATGCCA--GTCTTTATGAAATGGTCACACCTATCTCTCAG----TTACCTCACCAGCTAAGGGAATTAAAA-GTAAATTCATAATGGCAGTTTATTAGGGACATGCCACACAGGCAGTTGGACAAAACCTGT----AAGTACAATTTCCTTCTGTAATTATTTCATAGCATCCTAGAATTCTGGAAACCTGGTCAGGAAATGTCATCTA-----TTTCCCCATCTCACAAATTTTACTCCCTTCCTGGTGGAATGCTTTTAAGAATTCTAAAACGGACAATTCTCCACAGG----TCTTCTGCCAGACAGAAGTGCCCCTTCCCAAACCAGAAAGGAACAGACATCTCCTGGCATTCAAGAGAAGTGGCCTGAAATACGAACGAAATATCTGGTTGTGTCCTTGGCTTTAAACAGTAA a score=6594 s mm7.chr9_random 3064744 224 + 9745104 TTTCCCTACCCCAAGGTAAATGAAGAG-------TTACTTTATTTATTTGTCCGTGCTTAAAGACTGTTAGGAGAATTGTACCTATGTATGGAAAACAATGTAAAGTAGGAAAGTCACCAAGGACTGAAGTCACTAACCTTGAAAGTAGGTTTTTCATCGTTCTATAAAGAACACCCTAGAAAGGAAGTATGAGAGTT-AAAGGTCTCCA--TATAACTAACTACCCGTCTGCC s bosTau2.scaffold3844 35318 228 + 74535 TCTCTTCTCCCCAGGACAAGTGTAGAGACTGAAGTTGCTTAATTAAATCAACAGTAATTAAATGCCATAAGGGTCAT-GTCTCTGTATGTGAAAAAAAA---AAAGTAGGAAATTTACTGAGGACTGAGGTGACTAGCCTTGCATGTACGTCTTT-ATCTTCCT-TATAGAACAAACTAGAATGGAAGTACTAGAGTTGAAAGGTCGCCAGTTAAAATCAACCTGCCCTTTACC a score=28931 s mm7.chr9_random 3065003 1197 + 9745104 CTTTAAGCTTTGCTTCCTCTTCAGTAGGAAAAGAAAGGAAGATCTATCTACCTTATGAGGCTGGTGTGCCATTAG-TGGGGTAGAGTATGTATGTGCCTACAGCTTAA--------AATAAAAGGTTCTCCTCTCTCTACATTCCTTCATGAAAGGTCTCTGAGTTTCATTTGTGTTTTCCTATATCCTA-AGAT-----------AGCAAATATG-AGAATATGCTCAAAAGATAACAAAAA--AAGTTCCTAAGGAAAGGTG----GTCAGAATAACACATTTAGATTAGCTATCAACAGGATAGACCATCCTGATGGTTGCAC------TAAGTTGTTTTTTAA-TCTCATCAGTTACTGGGAAGAAAACTCA--ACAGTGCACGTTAGCCATG-----CAAGCTGCATCATTTAACCACTTCTGAAGCAG-----TTCTGGGGGGCGAATCAGGCTTTGCACCCTTTTCAGCTCACAGAACAGTTGCCATGACTACAGTATAGACAGAGGTAGTCATGAGTAATATTCTAACTGGGAAATCTAAACTCGG----------------------------------------------------------------------------------------------------AGGAATTTTCTAAACAGTAGGTATGGATAGGATTTAGGTAAAAACCTTTTCCTATCCTCAATCAATCCGTTGACACA--GCTGCCA-GGTTTTATTTCAATAATGGAACGTTTTGTTATTTTTATAGTAAATGCTTTAAATTATGTGCATTAAACACTGCAGTATGCACTGCCTTGGGAAGTTACGTATTACTTAGTTTGCCACTGAATTGCATTTGGATCATCACTGCTGAGTACCAGTTAGTGGATCAATAGGCAGATCCATCAGTTTGTATACAGAGGCTCAACGGTTTCTAGTTAAATACACCAAACAGTTGTTTGAGGACTGGCTGTGCA-TAGTAACCTGCACTTGCAGGTCT----------ACATGCTGC--------TTCAGT-------GTA---------------------TATACTTGATTGGAGTTTCATGAGT---AAGAGCCAAGCACTGGTGGCCAACACAGTGCAGTGCTCTGTGAAGCTAATAATTTGAGGGCATTACA----AAGGCAAAAAAAAAAGTCTTAATTT--AGACAAAGTATCTCAACTTATTTTACTGATAGCTAAGAGTCTACAAATACAAAATAAAAAGACAGAGCTATTTAGATGACTGATAGTG-AAGATCAAACATT--CTCTTCAAATATCTACCTCCATGATTGGAACTGAAGTGA------GGATTTCCATTCTATACCTTGATTCATGCCAAAACATCTGGCTAAGAAGTGTTAAAACTC s bosTau2.scaffold3844 36091 1381 + 74535 CTTTGAGCTTTGTTTCCTTTCCAG-----AAAAAGCAGTAGGCCTAGT--CTTTGCAAAGCTACTGCACAATCAGGTGAGCTAAAATGTGAATGTGCCTAAGGATTAGCTAGCTACAATGGAAGTTTCTCCCTTTCCTAAGTTCCTTGAAGAAAGGTCTCCCAGCAATATTTGGAGTCCCCCATGTTCTACAGGTTCTAACACACCATCTAACATGCAGTCAGTATTCAGAAGATTTCATAAATCAAGTTACTGGGGAAAAAAGCAAAGATGGGATAAGGGATTCAGACTGGCTGTCAACAGGAA-------TTTGATTCTTTCACAAGCTCTAATTTGTTTTATAAATCTCAGCAGTTTCTTGGATAAAGATTCAGAACAGTGCACCTCAGCCACATAAGCCAAGCCATATCACTTGGCCACTTCTGCAGCAGGAGGTTAATGGAGGACAAATCAGGTTTACCACACTTT-CAGGCCACAGCAAAGTGGCCGTGACAACAC-----AGAGAGGCTGCCATGG---ATTTTCTAATTGTAGGATCTaatcccagggacagaggagcctagtgggctgccatctatggggtcgcacagagtcagacacgactgaagcgacttaccagaagcagcAGCAGCAGCAGCAAACCCCTGAGGAGTTCTCAAAGCAGCAGGTATTAATAGAAGTTAGGTGTAAATAATTTCCTATCCTCAATGAATCT-TTGACATAAAGCTGCCATGGTTTTATTTCAGTAATAAAAGGTTTTGTTTTTTTAATAGTAAATGCTTCAAATGATCTGTATTAAATCCTGCAGTAGATTATGTTTTGGAGAGTTGAATTTTACTCAACTTGCCACTACACTGCTTTTGGTTCATCAAAGGAGAGTACCAAATAGCAAATCAATAACCAGACTGATCTATTTATAGGGAAAAGTTCAATTACTTTTAATTAAGAGTAGAAAGAAGTAGTCTGAGGACTTGTCATACGTTAGTTATCTCCATTTACATGACTGTTTCTTCTGACATACTTCAAAGAGATTTCGGTCAATAGGGTACAGACAGCACTATCACTGAACTATATGAAATTAAATTTCTATTGTTATAAAAAATTA--TATTGATGATCACCTCAGGCTACTACCTTGCAAAGCTGGTAGCCTTTGAATATTTTAATCTAAGGTAAGAAAGGTATTTTTAACTTAAAGGAAAAAAACCCTGACCTTATTTACTTGCAATTAAGAGGCCATCTATATAAAATAAAACAA-GTAAATGTCCAGATCACTTATGGGGTGAGGTGAGAAGTTTCCTATTGAAATATCTA----GGTAGTCAGAGCAAAAGTGGTTCTCCTGTCTTCCATTCTTTGCTTTGCTTCACGCCAAAACATCTGGCTAAAAAGTGAAAAAACAC a score=24556 s mm7.chr9_random 3066370 1409 + 9745104 TCAAATGGCATATTATAGAAAAAAATCTAGATGACTGATGGCACTTTCCACTTTAAATTCTATGTTGTGGTATCGTGGAGGCATGGCTTTTGTTCAGGAAATGTGATCTTTTATTGGC-AAAAGCATGGTTTTTTTTTACCAAGCTTGCTTTGCCATGAATTAATCCATCAATTCTAATTCAAAATCAACTAAAAATTCTAAATAATGGACCCAACAGTGTGAGAGCTAAATGTCACTTATGCTGTGTCCTAAATCAAAAGGTAGAAAAGAGAATAGGCTGGCTTTCCAGAAATGA--AGAAACTACACTCTTAAAAGTATCTGGA-----------CACACAAATTAAAAACCAAATAAAACG-GTTAGAGTCGATTC------TTTTTCTGAGCTGACTGTAAGGTAGTATTTTAAATCGAGCACCACATGCCCAACATGCACGACTG----GCATTGTTGTAACAACGTGCGG------GGGGGGGGGGAAGGGGTGCGGGGGGGAGCAGGATGCTGGCAGGGAGACAGCGGAGA--CACCCAGCTTCT--GATGGCAATCTAACCCCAGGGTCTCCCTCTGAAGGTGAAAGGACACTGGGGAAACCAGAGAAACAGAAGGACAGTCTGATTAGTCGTCAGTCATAGTCTTCAGAGGACAGTTCATTTTGGTCAGCCTGAGGGGGACAAAGCTAGCTCCAGATCAGCTGGGA---AAGGGTTAGAGATGCCTGACCTCTTTCAGTGCTGCTTACAAAGCTCCATGCTATCTCAAGTCATTCACAATATAAAGCCCAG------------AAACCCTGTGATCCAGGTCAGCACTGACCCTGTATTCCC-TTGGATCATAATTCCAAG---CACGGAAAAGGACATCCT------ATATCAGTTGTGACCTAGCTCTCCCAAGTTCTTTCAGACATA-GGCCAAGTCTTAGTCTTATACTTG-ATTTGGTCCACTAGAGGCCTTCCTAGT--TTTTAATTGAATCTCAATATCTCA-CCTGCCCCCACCCTGTCTCTTTCTCTCCCCACTCTCTGAACACACACAAAGAGAGGGGGGGGGGAGAGAGAGAGAGGGAGAGGCATACATGCACACGTGCCCACACTCCCTCTATGTTTCACATAGATCCTCAGTGGGTTAAATTTCTACATGCATAACAATTACGAGAGAGCATAACTTAGGTATATCATGTAAGCATTTTAGGGCTCAGTTTTCTCATACACCACATAAGATGAAAACACTGCT----CAGGGGTAATACTGATTGAATAAGGTACTGGATTACAGAAAATTCTGGGCCAGTGAGCACTGAGATGTTTTATTGCTTTTGATTCCAGATGTAAACAACCAATTCAAggggctgaagagaaggctcagaagttaagagcacttgtttctcttgcagaggatctgagttctgtttctagcacccacatggtggctaactcttcactctgt s bosTau2.scaffold3844 37472 1256 + 74535 CCAAATGGCATTGTATAGGAAAACACCTAGATGATTGATTACATTTTTCACTTTAAAGTCAATGTTTTGATATTATAAAGACATGGCTTTTGTTCAATAGGTGTAATCGTTTACTGGCAAAAAGCATGG-----TTTTACAAAGCCTG-TTTGACAAGGACTAGTTTATCAATCTTAATTT-TAATCAATTAACAGTTTTAAATAATAGACCCAATATTGTATGCCCTGAACCCCACTTATTCTGAGTCCTAGGCTGAAAGGCAGGAAAAAGGAAAAGTCTTCATT--AGAAAAGACTACAAACTACACT-TTCAAAGTATGCAGAAAGAGCAAGGTCAAAGAAATGAGAAATCAGAGGCAACATTTTAAAATAGCTTTAAAATGTTAATCTAAATTGATTGTGCCAGAGTATTTTAAAATAAATGCTATATGCCCAACATATTACACTAATATGCAATGATTACACAAATTGTGTTAATGCTGTAAAGAGAAATAAGTTAGGGCATTAGCAGAATTC---------GGCAGCCAAGATCCACCCAGCTTCTCACATATCCATCTAACCTCAAGATCTGTTTCTGAAAGTGAAAGGACACTGATGAGAGTAGAG--ACAAAAG-------------ATCATCAGTCATGTTCCCCAGAGAGCAGTTCCGTTTGGGCAGCCTTCAGGACACAAGGCCAGAACCACATGAACTGGGAGGCGAGGTATGGGGGTGGGGGGCTCCTT---------CTTTCCCGGGATGAAGCCA-CTTGGATCATT-----TAAAGGGCTCTGGGGGTAATTCCAAGACCCTGTGATACAAACTAGGGTAGACCCAGTGTTCTAGTTGATTCAGGACCCCAAGGGTTATGGCAAGGTTTCTCTTCCACACACCTAAACTG---CCTAATTTCCCCAGGCTCCCTTAGTAATACCACCAGGTTT--GACTAGCACCTATATTGAATCTCATGGAGGTTTTTTTGGTCGTCTTAGGTG--TCCTAAGATCAAATTCTGCCTCCCCACTGC----------------------------------------------------------------------------------------------------TTTCAAACTATTTCTTTATGGATCAAATTTCTACATGTATAAAGACTGCTAAATGgtgtgacttaggtgtgtcatttgatctttctatggctcaattttctcat---ctctaaaaggagaaaat-cagctcatccagtgg-----ctggaaagattaagtATTGGATGGCTGAAAA-CCTGATACAGTGCACACTCAAATTTTTAATTGATTCTGATTCTGAATGCAAATCATCAATTCAAGG------------------CAATTTA-------TTAATGCTCTTAAAAA-------------------------------GTTACTCACTCCTTGTTCTGT a score=85033 s mm7.chr9_random 3067953 3228 + 9745104 attcattcattcattcattcattcattcTCCATTGTTACTTTGGATCCATTGCCAAACCAT----CACAGAGAGC-------TGG-----------AAAGATAGAAGAGGCCATCCCACATATGAACTGAGC----TCCCTGGATGGCCTTCTT-----ATTGCTGCATGAAAGCAGAGTAA-AAAGGGATGCTTCAAACAGTCCTGGCCGGAAAGGGACTGATCAGTGGCCTGGGAAAAAGGCTTTGAGAAGAAAAGCTTGGGAGAGGGCTACAGTGACCACTGGC------AGTAAGCCCAATGTAACATGATTTCTTTTTGTCTTCTGCTTGG-AACAAATGTT-CTTTGCCTATCTTCCCTGGGTTTAATTAGTCTTCTGTCTTTCTCGGGATT--GACCGTTCATTTGCAAATAGAGGACATCAGAAAGGCTGGTGGGTGTGGGTGTTGGAGT-GGAAAGAGGTTGGAGTGTTTATTTTCAAAGCCACAGGGGTCCCCATTTG-AAAAGCACCCAGCTTATCTCAATGTTTTTGTTTGTATGATTTTGAATTGGAAGGTTGGAGCAATTCATTTAGGAGATTAAGCTGTCTTTACAATGGATCTGGTTGGCCTATCTATTCAATAGTATTGCTAAGGTTAAGGGAA-GTCCTTCCAGGGCACTCA-----GCGGTCCCAGTACAACAATTAGAAAGGATTCTTTGAATCTTCCTTCATTTTAATGCCAATTAATTTTACA-TAAATGGGTGTGTATTTGCTGCTCACAAATAAGACTCATAAACCCTCCGTCCAGCAGTTTAGGGTAGCCAGTTTCAACAAGGTACAGGATGGCCAATAACGTGGGAATTTATTAAGAAGGGAAAAATGAATACAACTTCATTCCATGTATATTTCATATCCCTTAGAAATCCTGGG-----------TTAACCAGAGAGTTACTTAATAACAAAA--TCAAATTTAACTAG-------ATATATCATCTGGCAAACTTAACCAGATGTTCTTGGGTCACCGTATTTGTTTCAAGAATGCCCAGTGACAAATAGAGCAGATAG--CATCTCATTATTGCACTTAAAATTTACGCTTG------GCGGAGGTGGAGAGTTTCATCAGACAGAATAACC--------CTGATGTATGAATAAAGTGACATCTTA-GAAATGACATGAGTTTTCACTCTCAGGGTAAACCTAATTCCAGGCACGAAAGCCCGGCCCACTTATGGAAATGTCTCTCATCATAGAGAAACTTAAAGGCCCAAAAGGCAACTAGCACCTCTGGCTGAATAAGAAATTAATG-----------TACATGT--TTACAAGTGAGTACTCCTTGTCATTTATGTTGCAAAGTGAAAACCCTG-----------GCTAGAAAGGC-----TGGATATCCTAGGGCTGAGAAAGTCTTTTAAACCAATAATTGAAAGGCTTCT---------------CATTTCCCTGTGACAATAAATAAAAA---------------------GCAATTGTTTTCATATA-CTGTTGGCACAGTTAAGGAGA-GGT------TTAGTGAATTTTTT-------ATGAAAATA------------------------AAATAATTTCCAGCATAATTATGTCTATTTTATATATGATtctctttctctctctctctctctctctctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacacacGTGCAAAGGGCTCTATGA--AATGCATT-TCTACCTCAGGAATTAGACTGTAATATTATTTATATTATTACAATGATTCATTGCAAACATCTTTGACTTAAAAGGA--TAATGAACTAATAATGCCAGCC-ATCGCAGTTTATAGATTTTACTT-GTTACCTGAAACTTCCATCTAACGTTTAAAAAGACTTTAAAATTTTTG--AGACCTCAAAGCtcattcattctttctttcttcctttcttcccccatcctcctttcttcttttttAAATAGGTACTTTCCAAGGAGAAGGAggaagaagagaaggaaagaggggaaagaggaagagagggagggagggagggagggagggaAAACTATCAAATGTTTATTTGATCAAGAAATCTCTACTTAAGAT-----TAAAATGTTGAAAACAAGTATTTGTAGTACTTGATTGTGAAATAAACCCCATGTTGGCAAAAAGTTCTTCTAAGAAA-------------TACCACTTGGCATAGAATTCCTCTTCAAGGAAAACTACTTATAACTCCATGATCGTCCTATATAAGAAGCTGCTGGAATGTCAGCTTCACTCCCAGTGGCCCCATCTGGCCTGAGCACTCTCCCTGGCATGATAAATCACTGACAG-GTCCTTACCTTCCTGCGTTTGATCTCAGCTCAGCAAGATGCGGGTTTGATGTGAAGAACTCCAGAACTCTTAGGTCAGAGACAAATCGCAGTGGCACTGACCTGCCGAGTGCTAAGTCTCTATTAGACT-GTGTGAAAAGCTGTGAGCTTCTGACAAGTTTTCTCACCTCTGAGTTT-CTGGGCCCTCTGTGGTTTTCTTGAACTTAGCTTGGCAGAAAAGCGGCAGCAACAGCTT-----AAAGATGTGACTGTGAACCTTTCCTCTCTCTTAAGGAACTATCTCAGCAGCCATCGCTCTTATCCCAGGGCCGTAAATCTAACAAAAGTGAAATGTGTGATTTCTGTTGGGTATATTTTTATAGAGAGATCTCTTTT--TTTATGTAGCAAAATATTAAGTCTTTTGATATGCTTAAAAAACAAAAAAACAAAACATGAGAATCCCAAATTCACTCTTATT--CAATGAACTTTTACTGCACTGCAAACCACTCATGGGCAGAAGGAGAATCATTAACAGAGGGTTTTGTGGACCACTCTTTGGTAATTACCACTATATCTTTGGGAAAGTATTCTTAACAAAAGCATC--------CCAAAATT---GGTCCCAGAAAGAC----AATTAAGTGT--GAACAAGTTCAGTATTGTCCTTCCTGTCCTCATAACCCCGGGTTCTGGGTCTTGGTGAGTGGAGGGTTTCAAAGCATCAAGAGTGGGAAA----------ACAGTTCTTCTAGTTCTTTATATAAGTA-------GATAAATAAATATGCATCTCATTCTTTCCTATTATTTCATTAGTAATAAAAAAT------GCTGTATTTGAAATTGTCATTCAGTACCACCAAGTATCGCTCTGTTTCTGGGACCTAATGTACTGGGA--CACTCAATATGCAATCAAATGATTTTGCTCTTTCATTAGATGAATAAATGTATGTTATGTG------------AGGAACCACTAAATGTTCCCACA---CTGGAGG----------------CAGGTCCTCAAATGTTCCATGCTCTGCCT------GTGCCCTCTGTGTGTGCACCCTCAGAGAGAGCTCTATTTCAAGGGACTGCGCAAGTCAGTGGGAGTAAAGGAG s bosTau2.scaffold3844 38728 3265 + 74535 GTTTATCTGTTCATTTATTCTTCTGTTGCCAGTAAGTA----AGACCCTTTGTCCAACCATGGGACACACAGGGCAAAAGGATGGGAAAAGAAGGTAAGGACGGTGAAGGCCGTCCAGCACACTGACTGCTCAGAATTTCTGACTGAGACCCTTTCCAGATTCAGCCACGAAGACAGTCTAATGCTGGAATGTTAAGCCTGGCCCTGGC-----AGGGTCTGAGCAGTGGTGTGGGACATATGCTCAGAGAAGAAA--CTTCAGGAAAGGCTTTAAGGCTTTCTGTCATCTTGAGAAAGCAGAATGTGACTTGATTTCTTTTTGT-TTCTGCTTGGAAACAAATGTTCCTTTGCCTATCTTTCCTAGGTTTAATTAGTCTTCTGTCTTTCTCAGAATTCAGCCTGTTCATTTGCAAATGGAAGACATCAGAAAGGCTAGTGAGTGTGGGTGTTGGGGTGGGAAGGAGACTGAAGTGTTTATTTTCAAAGCCACGGGGGTCCCCATTTGAAAAAGCACCCAGCTTATCTCAATGTTTTTGTTTGTATGATTTTGAATTAAAAGGTTGGAGCAATTCATTTAGGAGATTAAGCTGTC-TTACAATGGGCCTAGTTGCCCTATTTATTTACTAGTATTGCTAGGGTTAAAAAAAGGTATTTCTACTATACTCATTTTCATTATTCAAGTACAACAATTTTAAAGGATTCCTTTGGTCT---TTGATTTTATTGCCAAGTCATTTTACATTAAAATCATATTCATCTGTTGGTCACAGATAAAAATCACAAGCCATGTATGTAACAGTTTAGGGTTGTCAATC----------------Tgttaaatatc-----aatttc-----agaaaaataacaaattaaatttca------gtata-ataatgtcccc---aaatcatggggcatagttgtatttaaaaagtattcattatatatcaaaaattcaaatttaactagatgccctatattttacctggtgaccct-aCCAGGTTTTCATGGAT-GTTGTACACATTCCAAGGATG---------AAAACTGGGAGACAGTCCATGttattattatttattatatttaaaCTTGCTTCCTGCAGATCTGAAGTACTTCATCAGTCAGAATAATAATTCCTAGCTAATAAACAGATATACTGATACCTCAGGAAATCAACTGAATTCTGACTACAGGATGAGACCTAGTTCTAACCATTAAAGCCCATTCCATTTATGGTAATTTTTCTCATT-TAGAAAAAGTAAAACACAAAAGGGACAAATGATATCTTCAGTTGAATTAGAAGTTAATGTCACAACCTACTACATTTAACGACCAATAAATATCATCTTTCA-TTATGTTACAAAGCAAACATTCTGTGCAAAGAGGAGCTTGAAATGCCCCAGTGTATATCCTAAGGTTGAAGAGGTC-TTTGATCCAATAAATGAGTGTTTTCTCCACAAGAGACTAAACATTTGCTTGTGACGGTAAACAAACAACAAGCTGAATTTTATATTGCACAACTATTTTCATGTGTCTGTTGATAAAAATAAATAAATAGTGCACAGTTACTAGATTTTTTTCTTTCAGTTAAAATATTTGTCCACAATTTAAATGTCAGCAAATATTTTCAAACATAATTATATCTATTTTGTATTTAAGTAATTAAATTCTTCTTCTTTGCTCTTGGTCATT-------------------------------------------------ACAAATATACAGAAAGGTCTGTATGCCTGATGCCTTCCCTACTCCGAGAATTAAATTGTCATAT-----------TTGTAGTAATTCATTCCTAAAAGTCCTGAGTTAATAAGATGTGATGAATTAATGAGCCTAGTTGAGCATAGCTTATAGAGTCAATTTCATGATCTTAAAGTCACATCTAATATTTAGAAAG-----CAATTTTTTAATAGACCTAAAATCACCTTTATTTTTCTTTTCTTTCTTTTTTC-----------------TTTTTCAAAATAGTTACCATCCCAGAAAAGGGGTGGAGGGAGGAGACATCAAATGAAAAGCTCAAATT--------------------------AACCTTCAA-----TATTTGGTGAAAAAATTCCTTTTTGCTATTTACATAAAATAT--AAGAAAAGTCTTGCTAGGATGTGATTTTGAAATAAATCTCATGTTGGGGTTAAGGCTTGCTAAGAAATGCCACTGAAAGCTGCCACTTGACCCAGAATTCCTCTACAAGAAAAACTAGCCACAACTACATGTGAGACTTATAAGAGAAACTGCCGGAATGTCAACTTCATTTGCAGCAGCCCCATATGGCCTGATCACTCTCCCTGGCATGATAAATCACTGGCAGAATCCTTACCTTCCTACGTTTGATCTCTGCTCAGCAAGATGTGGTTTTGATGTGAAGAACTCCAGATCTCTTGGGTCAGAGACAAATAGCAGTGGCACTGACCTGCAAAGTGCTAAGTCTCTATTAGACTCAAGTGAAAAGCCGTAAGCTTCTGACAAGTTCCCTTTCCACAGAGTTTACCCGACCCACTGTGGTTTTCATGAGCTGAGGTTGACAGAGAAACTGC--CAAAATCCTTCGGCAGAAAAGTGCCAACAAGCCCTTTTTTCCT-----------------------ACCACCATTACC----------AAGT--------ATTAAAATCAATGTTCCCTA------AGACTTTAAGGAAGAATTCTCTTGGGAGTTACTAATCGAATTTCTAGTACTCTTGA-GTGTTTAGTAAACACAACAAT-----------------------TTTTTATTTCCAGTGGATCTTTATGACACCGCTAATCACTCATTTATATAACTAGAGTCATTAACAGAGATTTCTGTGGACTACTTTTTGGTAATTATAAGGACATCCTTGGGAAAATATTTTT--TAAAACCACTGTTTTGAGTGAAAATCTGGGGTCCCGGAAAGCCTTGTAACTAGATGTACAAACAAGTTTGGTATTTTCCTT-CTGATCTCATAATCCCATATT-GGGATCCAGGAAATTAAAGAGTTCTGAAGAGTC-AGGGTGGGATGAAGAAATCTTACAACTCATCTAGTCATGTTTGTAAGTATTAGGTGGGTTAGTAAACAGGCATCTCATTCTGTCCTATcacttcataagtaataaaagttaggtccaaggaatttaagtaacttaatcagtatcacaaagca--------TTTTCAGAGTGTGGTGTAGAAGGAAGCACTCAATAAGTGATTGAGTAA-TTTGTTCATTCAGTAATTCAGTGCGTATTTACTGTGTGCCTACATATACAAGAAACtgctcaacgagcacacatccctggcagagctggcaccagaacccagatcttctagtgcagagtcccctgtcttgttcagtactctacA-----GCACACCCTGAGGGGCTTCTATTTCAAAGAAAGGGATAAGTAAGTGGGAGTGGAGGAG a score=40379 s mm7.chr9_random 3071681 1004 + 9745104 TTTAGTTGACTGAAATGATGAGGG--TACAAGTAAGCAAATG----ACAAACATGCCTGTGGTTACATACTGCTTCACAAACCTTTCTCTTCCGGCCACTCACAACAGAGA-----TACAAACCACACCCACACTCTCCCTCTGGAACACTAAGTTAGTGACTTTGC-AAGTGCTCAGTAAGG----GTGTTTCACTTTTCTTTCTCTTGTCCAGCCTTGTGTACAGGCATCTACA---------------GTAATTCTAAGCAATGATCTCCCTCATTAAAGCAGATCACCAAGGATCCCCAAA-----TCTGTTCTGTGCACTTCTTTTCTAAGCCTTCTCTTTTTCTCTGCTGGAATTCCTGGTAATGACACCCGAATGTGGGCAAACCTCATTAGTCTCCCTGCTGTTTACAAGACAGGATTTATGCTCAGTGTGCCGAACACAATGACACACGTCACTAAATGGAGAAAACTACCACCCAGGCTCCAATCTGAGAAAATGTTCACTCTGTACAAACACCTATCAGTGTATAGGAACACGGAAGAGCAATTACTGCCAACACATGTAGTTCTTTAAGAGTACACCAATAAATGCCCACTTGCAAAGGTTAATTTAATGCTACCCAGGCTGTTATCTGG-------TACGTCATCAATTCAATCCATTAAGTAATTACTAAATTCTCAAGAGGGCTCATAGAAGTCAAATGTGTCTATTCTATGTTCACTGCTTCTGGTTTCCCTAAAGACCATTTAGGCCAACAGCTGGAAGAGAAAACCACCAAGGTTGCCCATCGCAACAAGCTA-CTTTATAAAAACAGGTAAAAGAGACT-ACCCAGGGCTGCCCGTTATCA-------------------------------GAGACGAGACG-ACAAGTGAGCAAGA---CTAAAGGGAGGTGGAAG----AGTGAGGAGGGGTG--GGGCTGTGGGG--ATGGGCAGAGGGAAAGGC-TCCTCTTTGAAAATGAAGAAAGGAATGTAAAGGCTCTAAGATCCCATCAAAGGAGACAACTCAGTCAGCATTTTCTTTGCATAGCAGTTTTGAGCCACTTCCAA s bosTau2.scaffold3844 42437 1077 + 74535 TTTAGCTGGCTGTAATGATGAGgagttctgagaaagcaaaaactgtgctatcattttagcagctgtat--tatttcaatagctatcccactaca--ctctcacaattgaagacactcataaatAAGCCCTTCATTAGCTCTCTGTAGAACCAAGTCACTGACTTTACCAAGTGTTCATAAAAGCAGAATGTTGGTTTCTATTTTAGCTAAATGTAGTTTATGTACTCGTATTTGTACATACATGTCTATGCTTAATGTTGAGCAACCATCTCTCTCCTTAATTTGGATCATCAGGAGTTCCAAAAATCACTGCATTTTATGTACTTTT---------CTTTATTCCTTCTCTGTTGGAATTCCCGGTAATGATACCAGAATGTGGGCAAACCTCATTAGTCTTCCTGCTGTTTACAAGACAGGATTTATGCTCAATGTGCTGAACACAATGACACATATCACTAAGTGGTTACAACTACCACCCAGGCTTTCATCTGAGAAATTTTTCACAGGGTACAAATACCTATCAGCATGGAGAAACATGGAAGAGCAATTACAGCCAACACGTGTAGTCTTTTAAGAGTAC-CTAATAAATACCCATTTGTGAAGGTTAATTTAATGCAACCTAGGCTGTTATCTGGAATAGTATATGTCACCAATTCAATCCATTAAGTAATTACTAAATTCTCAAGAGGGCTCACAGAAGTCAAATGTGGTTATTCCAGGTTCATTGCTTCTGGTCTCCCTAGGGACCATTCAGGCCAACAGCTGGAAGAGCTGACTACAAAGGTTCCCAGGCACAACTAACAATTTTTATGAAAACAGGTAAATGAGTCTAACCAAGGAATGAGGGTCATCAAGGGCTTGTCTGAGAGGAATACTTTGGGAAGGAGAAGAGAAGCACAAGGGTGTAAAAAATTTTAAAGGAGATGAAAACGGTAAGAAGAAGGGGTGTCTGGCTGGGAAGTAGTGGATAAAGAGAAATGCTTTCTCTCTAAAAGTGAAGACAGAAGTCTGGAGATTATAACCTGGC-TTAAGGGCAATAACTT-GACAGTTGTTTCTTTAGATAGGATTTCTGAGCCATTTCCAA a score=22412 s mm7.chr9_random 3072955 1058 + 9745104 AGAAGAGCACCTTTTAAATGAAAAAGAAGCAAGCAAACAGGTGTTGTTCAGGGCAGTGTGTGAGTCC-TCAGCCTGTGAGAATCCTCCAACACCCTCTGTCTTTACAGTCACCTGCAGAATCACACCTACCCAGGTGGTTCATACCCAGTATGCCAGATTGTCTCAGTTTGTCCCTTG---------------------GCCTTTTCTCTTAAACCATTCAAACTGTTGCTACTAGTGACCATAGAAAATACTAATCAACTGGA----AACTTGGGATTTGTAGTCAAAGAACTGGGTTTGGAA-TGCATTGTTAAA-AGTCAGTAGAGCTGATGGCCCA-GATTGGAT----------------TCTTTCTTAGAGTTCCTGTGCGT-TTCTTGCTGTTACCAACAGTAAAGAAGAGGGCAGCatgctggcgtt------gtcacctactatagctgaggagccaggaaagggtatttaatttaaatatgctcaatggtttcacttataaaagggagatattactataatattaataccataggattaccataggaattaattatactcaatgt-------------caagctggcctat-------------------------------------------------------------ttggcagatattaataataaatTATACAGTGGGCATTTATTCAGCAAACATTTCCAAAGCATCTACACAG-------CTACACACAGAATTCCCATCTTTTGATAAACCTTGATAAATTAGAGTTTATAATTTAGT----------AATAGAATTATAC-----AAAGTATAATCTCTAACATAAAGTTCTACAATTTCATAGCAATACAAATAAGTGATATGGGCACACAGGCAATAGAAGTTCACTGTGGAAAAGTATATCATGCAGACAACTTTGTTAGGTGTCACGGGAG-ACTACACCCAAAGGGGCTGCGCTCCATGTCGCAGTCAGAGAATCTCTCTGACAACAGTCTGT-------AATTATAGGCACACACAACTGCATGAATCATATTGCCTACAGAACCCAAACACAAAGTTAAATGTGTAGTGTACAAGCTTTGACTTTTAAAAC---ATGAGTTAAAGTACT---AAAATGGGAAGTACTATGTTATTTCCAACCCTGATGCTAAGGCATAATTCAATTTCTCTACACATGCAGAATAAAACCCA s bosTau2.scaffold3844 43952 1172 + 74535 AGAAAAGCACTTTTTGACTGAAAAAA---CAAACAAGCAGGTGTTATTAAGGGCCCTATGTGACTTAGCCAACCAGTGAGAATCCAAAAATACAAT---TCTTTCCCATAGCCTATGGAATCACATCTACCCAGGTGACTCACCCCAAACGTT---GATTGCATCAACTGTTTTTTTGTTTGAACATACTCTGTCATGTGTGTTTTATGTCAGGCAG---AAATTGTGGCTGATGATAGCTATGGCAAT-----ACCAACTGGACTTAAGGTTGGGATTTATAGTCAGAGAACTGGGTTTGGGATTATCTTGTAAAACATTTAGCAGAGCTTTAGGCTAATAATTCAATTATTATTATTTTTTGGTCTTTGTTGTGGTTTCTGTGCTTGTTCTTGTTGCTATGAGGAGGGAAGGAAAATG-ATTATTTGAGGCTTAGAAGAgccacctac---agctgttgatcctggaaaaattaattaacgttaatatgcttgattgtaccacttataaaatggggatgttaatagaatattcacataataggactgccacaattattaaaagtaatcaatgtgaaaagtactttggaaactgtagtattaataatgaaaggataatatgttaattaACAAAGTATTAATCAAAAGATAATTCATTGCTATTAGTAGCTATCAGTGATAAA--ATATAACAAGTATTCACTCAACAAATACTTCCTAAGCAGTTATGCTGTAAGATACTAAATAGAGACTTCC---------ACGTACCAACATGAATAAAAGTTTATAATCTAGTACAGATTAAGAGTAGAAGAGTACACAGAAAAATATAATACAAGGCA-AAAATTGCACATTTTAGTAGCAGTACAAACAAGTAACAAGGACTTTCAGAGATCATA--TTCATGCTAAAAAAATACGT-GTGGAGTCAACTCCGTGAGGTATTACATAAGTAAAATGCCTAGAAGGACTA-GATCAGTTTTAAGGTTGGAGAATTTCATT--CTTCAGTTGGTTCTTTAGAATTAGAGGCACACA----TGCATGGATCAAACAACTTACGAAATCCAAATACAACAGTGAATGTGTA--ACACCAGCTTTGA-GTTTAAAACACAATGAGTTCAAATATTAACAAAAAATAAAGTG--ATGTTATTTTCAAGCTCAGCACGAAGGAATAATTTAAATTCTCTAAACTAACAGGATGAAGCACA a score=9638 s mm7.chr9_random 3076205 386 + 9745104 ATACACACACACTTGTGTTAC-ATCTATACCTTTTTATATAATTGA----------CTCCTCTTGTAGACAATCTAACAATCCA--GTGAT-CTGATCAGCT-AGCCTGAAAAGTCTCCTT----------------------------ACTTCTGACA----CTTGTAGTCTATGATCGCGCATGAGAGTCACTTATGTGTGCATACTCACTCCGTGGCTGAGTGGGATTTCTCTTCAGGCTCTTCCCAGTGATGATCACACCTATGTAACATTTTGTGTCAAGCAGTAACTACCAGAGTTTTGTACAAAAGAGGCCTTAATATATGCTAACCTGATCAATGAAAGA----------GCAAATTTAGGTA-GCAAAAGGAT-AGCTCCAGCTACAGCTGAGGATAAAATTGGCCCTAGGCAATACAATTAGATAGCTTTCTCTg s bosTau2.scaffold3844 46998 440 + 74535 ATGTATACACGTTTGTTATACTGTCTACACTCTCCTGTATGACTAAAGTATCTGATCTCCTCTCA-AGTATGTCTAAGAATACAAAGTGCTGCTGATGTGCTGAGCCTGAAACATCCCTTCTTTTGAATCATCATGGTGCTTCAAATGCACTCCTGTCAAGAATTCAGCATCTTCTATCATGTGCCACAGTCATTGGTGTGCATGTCCTCATCACACACCCAAGCAGGAATCCTCTCTAGCCTCTTCAGGACATTGCACACATCTATGTATCTTTTCATGCCAGAcagtgactaacaatgttttggacacaagaggctctagtaaatgt----ctgatgaataaatgaTGATAAGTAAATAAATTCAGGAAAGCAAAAGGGTGAGCTCTGGCTGCAGTTAAAAATAAAAATAACCCTGAGTAATGCAATTAGATAACCTTCCCTG a score=29499 s mm7.chr9_random 3076788 1829 + 9745104 taaaaaaaaaaaaaaGGAAAAGCCTCTCTACCAAGTTATATTGGTATAGTGGATATCAGGCT-TAAAATACAGGTGAGGCAGAATTGCTCAGTTTCATGTTTGGTAGATAATGAAACCAAAGTTTCATATTGACTCCTAATCTCCTCCCAACAAAGGACTTGCTGAGGAAGTCCAAATTTTACACCT-ATGGAA--AGAGCTCCAGTTGTTCCC-ATAAACTCCCACAGGCATTTCTCAATTTCATTTCCCTAGTCAAGGCCTT-GTATTGCACCTTCTTACT--CTACAGTTTTTACATCATCATAC-----CCAGTCCATAGATTTGGTATAGACCCTGGTGGCTAAAAAAAGAGAGAG-AGAGAGAGAAAATTAGGTTATTTTTGTCTATTAGTAGGTGTGTGAAATTTTTAATATCTTGTCAGACTTACTTCC-TGGAGGCA------CTTCTATTTGCAGGAAAGGATTTGTGACCTACAGCATTTTGT--CTTGGTTTAGCCTTCAGGA-------------TACTTCAAGCAAAATGCTT-GAATTATCAAGCTTGAAATAGGCCAGGTTAGGCTAGATAAATGAAAATGATG----GTTAAATATATAAA-TACAATCTCTTAACCATCCTGAAATGTTTTCTCAACTTTAGCAATAAATATTAAAAGGAATTTTTATATTCATATTCCCCTAAATTCT-TCCAAATGAGAGACAAATGTTTACAGTTTCATCTGACAGCAAATGGTGCCTTTCAAAAGATCTAGGGCTAAAGAACCTTCTACTTTGATTCTCCAGAAGTCAAA-TGTGGCTG----AGGAAGCTGAGCAGACAGCG--CTCTGGCACCAACA---CCCACCTGCTGGAGCAGGAAGGCTGCTTTCTAGAATAAAAA-TGAGAATGT-CACCCCAAGACCTTCTGATTTTTA-CCACACTGCAAGGAGGGCAATTAACTCCCAT--TGAGTCCCAGGGAAGCATA--AAGAACCCAGCAGAAGTCAGGGCGCCGCAGCCTCTCAATGGTTATTCCCACGGGAGCTCCCCAAGCCTGAGAGTGTCTTCAAATCATGTGACA---CGGAGACTTAA-GCGAATAAACTAGTAAAAGTTAAGATTCTAGCAGTTTTGATGACAGAGAGCTCACCTATTAGGGAAAAAGTTAATAATTTAAAAAGGAAACAATTGAAGTATAATTC---AATATTA-AAACA---AAATGAACAAGTAATAAATAGCAGTAATAAAGAAACAAATTCCCAGTTTGGAAACTTTAATACATTTGAACGGTTACATGGAGTAAGGTTTTGAGA-ATGTCTGAAAGGCAACTAAAAATTAGTCAAAGTGGCACAGCAGCAACCCGCTCTATTGACATTAGATTTGTGCTTGAGAGGAAATGAAGGG-TCTCAAATGACCTGTCACCATAAATAAAGAAATTAAGAAGAGGCCAGGAAGGCTACCAATTAGTCATCGGAGATATTTCACTTTCTGGAAGATGACTGTCCTCTCTTCCCAAATTTGAGCATTATCTTGGGTAGTCAAAGCCAGTGAAAGTTTTTTTCAATTGCAGATTACTTAACTCAAAGACACTATTCCATTGCCAAGAGATAACTACCTTCTGAG------------------------TCCTGGCT----------ACATCTTTA-------TTCAAACTATTTTAA------AAGTG------------------TTCAGAACTTGGCATTTCAGTTCAGCCAACTGAAATATCAATGTTAAATCTTGACTCAAGAGTCAGATAAAGAGTTTG-TTATTAAAAGGCTAGCTGGAAAAT---CAGTGTAGTGACTTTTTGATAATATAACAATGTGCT-----GAAGAAACACCAAGGGAGCCTCTCCAAGTGGGATACACTGTACACGTATAAGAACTCAATTCTGACCTCTCTTAGAATTGGCAACCTTCA s bosTau2.scaffold3844 47438 1786 + 74535 TGAAAA------------------------TCAAGTTATATTGGTACATTGGTTATCAGACTCTAAAATATAG-------AGAATTCACTGGTTTCATGTTCAGCCAATCA----------GTCTCATACTATTTCCTGATTTCCACCCAA-AAAGGATTCAGTGAAGGAGTCCATTTTTCGCACCTCATGAAATAAGACTTTACGTTATCCTCTGTTGATCTGTAGAGATAGTTCATAATTCTGTCTTCCCAGTCAAGGTCTTCTTACTTCCCCCTCTTTTTTCCTTTAAACCCTCCAGCACTACACGTACCTCAGTCCATG--TTTGGTGT---------TAGTCAATGATAGGGGCTGCAGGAGGAGGGAAACAGGTGATTTCTGCCTCGTAGTGAGTTTATTAAATTCACACTACTATGGCAGATCTACTCACATGGAGGTAGCCTCCATCCTTTCTGTGGGAAGAGACATATTGCTTACACCATTTTTTGACCAAGCTTAATCTCTTAGAAATCCCTAGAAATGACCTGGGGCAAAATCCTAAGAGTCACTGGACTTGAAATC--CAAAGACAGGTTAGAAAAACTAAAATCATATAGAAGAAAGtatataaaatataatct-ttaattatttttaCTTTTTCTCCATAATTTA-TAATCAATATTGGAAACTGTTTTGGTACCCATGATACCCTCAATTCTGTCTAAATAAGG------TGTTTTCCTTTCAACTGGACAATAGGTTTTATCTTTCCAGAGATCTAGAAATAAAGAAATTGCAACTCTGGCTCTCCAAAGGTCAGACTGTGGTAAGGAAAGGAAACAGAGCAGATATCTACTTCTGGAGGCAACAGAGCTGAACTGCAGTAAAAGGAAAGCTTCCTTCCATAATAAAAAATTAGAATGTTCACTCACAGATATTCTAATTTTTAACCACAGTCTACAGAATTCAATAAACCCCTGTGTTTAGCCCCAGGCTAGTTTGTTCTGAGCCCAGCTAAAGTCTAGATGGTGAAAGCACTCAATTATTATTCCAACTGGAATTTTCAAAGGCTGGAAGTGTTTTCAAATTATGCGATAAAACAGAAAGTTGTTGTAAATAAACCATTAAGA-----------------------------------------------------------TTTGGAAGGGAAACAATTTAAACATAACTCTACCATCTTACAAGCAGACAAATTAGCAATTGAGAAATGCCAGAGATAAG-----AAATTCACAATTTGGGTTATCTCACATATCTGAAAGGTAAAATGGAATAAAGCACAAAGACATGTCTGAAAGGCAATTAAAAATTAACCAAGGTGGCATTATGGCAATCATTTCTAT--GCATTGGTTTGGGGTCTAAGGGGAAATGACTGGCTTTGAAATTAATTGTCACATTTTAGGAAGACTTTCAAAATAGTCCCTATGTGGTGC-------------------TTTTATTGTTTGGAGGGTGAAGTGCC------CCCAAACT-------------GGGAAACCAGGACCACTGAAAGGCTCTTTAATTTTAAAATGTATAAACT--AAGATTATTTTCCATT-TCAAAAGGCATCTACCTACTGAGAATGTCCTCCTATGCTATCATACTTCCCAGATTTATGAACCAACAACTTGACATGATCTTTAAGCTACTCAAACACCAGAAATGACTCTTTGCCATCTGACATTCAGGACTGGGTAT------------AAAAGGCATGTTGATGCAGAGTTTTGGCACATGCGTCAGATAACTAATTTGATTACTAAAATCCTGGCTGGAAATTGTTTGATTCAGTAACTTTTTAGTAA---AGAGAAGTCCTTGATAGGGAAACCTCCAAGGGGTCCCATCTGATAAAAATCCAGTGTAAACATATAATGATTCCACAGCTACCG-----AGAATATTAAACCCTTA a score=24564 s mm7.chr9_random 3078708 945 + 9745104 AAAATTAACTAAAATTA-ACATTAGCTGATTGTCTATATAAA-----TACTTt------cttgttaagtactcatgagagccct---gagaagcaggtactactatt---ccaattctgatcaatgtagagactgaaactcagTAAAGAAACTCCTGGAGAGAAGACACC-TACAAATACTCTTGACTACCTCCTTTCTAAGACCTGACAAC------------ATGTGTTTAATATATGTTAGCTGTCCACATAGTCAAGAACTACATGCTTGACCAGGACTTCATCAAAGACCTATTTT-AGCTCAAACACTTTCTtttttccatgt----caagggcttgtaaacttttcttaaaacgtgggccatatggtctctgctacaaggactcagcgctgatattgcaagtcccaatgaaaccatagacaatatgttactaaacatacagggctgtgttacaacaaaactatatttacaaaactaggtggGCTGTGTAGAGTCTGTTGACCACAGTAAACTGCTAGTAAAATGACAAAAACAAACAAATAACAACAACAACAAAAGACACAAAATCATACATTGGTATTTGCATCTCATTATCCCACCGAGGAAGACCAG---------------CATTGGGACTTGAGATGCTTATTGGCTTGGTCATGGTTGGACCATTA--TTGAGACTCACTAATGGAAAAGAGAGAAAACCAAATATGCATGCCTGGCTTTTCTAAAGGTTGGCTAGACTGAAGTCAGACCT-----------TTCTAAG-------TCTTCACTGAAATTGAAAAACTATTGTTCATCATTCTATAAAA--------CAGAAGTGCCTCAGTAAATGATGGTTCCATGTGATAATCCTA-----GTCCCCGAAGTAGAAAGTCAGGGCCTCAGGAGAATTATCTAAGCCAAGTTCCAGAATGACATTATTTAGCTGCTCTTTGTTAAAAAGAGATGATACAAACATCAAAAGGCTGTATATTTATTTTTAAAAAGTATTTTACtg s bosTau2.scaffold3844 49340 953 + 74535 AAAATGAAATGGAACTAGACTTTGGCTGACCGTCAATATACGCCACTTACTtttacatacttgctcagtcctgacaacaaccatcatgtaaggtaggtactactattacctcagttttgacagatgtagaaattgacactcagtgaagaaactccctgaaaggagacaccattcatacgttgcatattaatccgtctccagaatctggcaccgtatttggcgctATGTGGTGAATAAATGCTAAATGCGCACAGCACTAAGAATTACAAATCTGACCTAGATTTGAACAAGGGCCTATTTTTAACCGAGAGCCTTTCTTTTTTCTAAGTAAGTCAAGGGCTTATAAACTT-------AAtgtgggccatacagtc-ctgttgtaactacctgactctgacattgtagtaac------agccacagataatatgtaaataaatggttgtggatgtgttccaataaaactttatttacaaaatcaagcagAAAGTCTATAGTGTGCTGACCCCAACAAGCTGTCACTAAC------------------------------TAAAAGATAAAAAAT-AGACATCAATATTTGTATTCCATTATCCAACTGAGAAAGACTAGAGAGAAAACTGTATATGTTGATATTTGAGATATTT-TTGTTTTGGTCATGGATAGCTCATCAAGTTAA---TCATCGTCTAACATGAAAGAGAACTCACTATGCATGCCTGGCT-------------GCAAGA---AAATCAGACCTCACAGAACACGTTCTCAGAAGGCTTTTTACCCTCATACAGAAAAACTA--ATTTCTCTTTTTATAGAAATAAAGGACAGAAGCACCTCAGCAAATGAT---TCCATATGAT--TCCTGCATATTTAACAGAAGGCATCAGGCAGAACC-CAGAAAAATTATCTAATTCAAGTCCTACAATTAAGTTGTTTAGCTTCCCTGGGTTAAATGGAGATGATACAAACATGAGAAAGCTGTCCA---ATTGTGAAAAAGTGTATTTTTG a score=2738 s mm7.chr9_random 3079986 202 + 9745104 ACCACAAGTCTTCTATATACAAGCAGCTAGATGGATACTTTATTAGCAAAACAACCAAACAACCATGAGTAAGATCTGGAATGAAAGTTTAGGATGAGATCCATAATGGCAAGTCCAAAAGGG--------CAGAAGAGGTCAGGATCATGACCAAAAC-------------------AATAACAAAAATAACAAG--TAGTAAATTAAAGTCAATGAATCAAAAATTATA s bosTau2.scaffold3844 50296 204 + 74535 ACCCGAGGTCTCCTATAAACATGAAATTTGATTAACAACTTAGGATCAAAAAGAC-----------------AATCTTGATTAGAGGTTTAGAA--------ATAAC--CAAACCTTAAAGAGATAATCCCTGGGATAGATAAGAACCCTGCCCTAGACCTAAAAGAAGCCCCCACAAACTCATAGAAATAGCAAAAATAGTAATTTAAAGTCAGGAAATCAGAGGTCACA a score=102506 s mm7.chr9_random 3080406 4847 + 9745104 AAAGAGGTGACTGTTTTAAGTGGAGTAGATCAGTTTCATATTCTCC---TGACTCCATTAGAAGTAACACA-AAGAGTGAAGATTTTAGCTTTCC--------ACATTAAAAAAAAAGGGGGGGGGTCATAAATAAGAA--AAGAGTATGAC-AGGAATGCTCTGT-----TTTCAAAATTCAAGGCCAACTTCTCCCTTATCAATCATTTCTATTTTT----ATTCT----CTTTCCAAGGCTTTTGCA--GAATTAACATGTGTGCATGTGCGAAAAGTGTGAAGTAGAGCCATTGGCCCTATGAAAATGCAAGTGACGGTGCAAGTGTTCTCGTCA------------CATTGACCAACTGATCTACTGCTATGTTGACAAGGAAATTCTGGCACTCAATCTTCCTAATAAGACTTTAAGTTCCTAGAAGGCAGATGTT----CCATAATCCAATTTA------------CACTATTGTTAAGAACATGGCCCCTCAAAATCCCTTTGAACTGAGTTGAAATTGACCCCAGAAAACAGAGTGCACTTATTAAAAGGCTATTAAATGAACAAATAAAATAATAAACAGTAGGTACCCAGATACACATTTG-TCTGATTTTTCCAGTGAGCTGCCTTTTGTGTTTTCTCTT-------------GTAGGTGCAGCAACAAATGCCCTCTTTGTGGACCCTTATACCCTA-CCCCACATCGCATCAAATACTGGGAGAACACAGAACCCTGTATGTTGCCAACTACGTACATTTTTCAGTTGC---------------------TCACTCCAAAAGT-------------------------------------------------------------GAACCAGTAGAGCCAGAAGAAAAGATGTAGTCATTGAAAAAAAGCAGAAAAGTAAGTGAAATAAAG----AAATTCTGTAAAGACGTGGAAATCTGCGAAAGGGAGAGAGAAAGAAGGCAGGGAGATCCTGGGACCCCACCCCGCCCTGAAGTCAGGGGCAGTTCTTAGGAGAATGCTAAGCCTTAGTTTTACAACGTGTATGCTCCCACAACACGGCTGGCAATACAAAAAC--------CAGGCAGATGAAACAGAAATAACTCAGAAAAAC---TAACTGAGAAACACACAGCTAAATGCAATCAGACC------------AGCTATTGAGCAGTCT-CAAAGAACACAAAG----GAGCATACGTTCTCTCAGCTCCACACGGGTGCCCTCCATGCttttt----------ttatttttatttttttaataCTAGT------------ATTCTTTCTTGACTGTAAGTCTTGAAACAAACAACCCCCCCCCATTTCTTAGCAAGAATCATTTAAGAAACTGG---GGGGTCTAGGTTCCTGTTTAAGAAGAAAAAGAAAATAGACATATTCCAAAGGCATTACAGTCATTTATCCTTAGTCTAAACTGGATAC-GAGAACTCGGAGCAAGCAGCAGGCTTATGTTATTTTTAATGGAATGCAATTGCCTAAAAGCCAATACAAAGCCACACACAC-GCTCTTTCAGAATGCTTCGAGGTTGAACTTTGCTTTTATAGCATTTTGTACAGAACCTTTGACAGAAAATGGCATTAACATAATATTGACTATTTTTTCCATT----------------------------CCCTTGGAACAAGAAGTAAAAGGATGAAAATGGCAGATAAGTGCAGGATCACAAATGCAAAATATTCTAAGAACATATTTTTTAAAATTCTCATAATCTGACCAGTTATGTTGATCACTAATTAGTTTATATTC-TTGTCAAATCACATAGAAAAATCATATTAT--AGTGTCATTCAATAAGAACAT--GTTTAACAAGACaaaattaattataaatttatttG---CTGCATAGTACCTTTATTTGATGCAAATGTTTTGTTTCCTCCTT--------TTCAACAGATTCCCAAGGCATAATAT-------------CTTTTAAATTTTTCCTAACAAATATAATAGCATTA-----AAGGATTGCCCA-TCTACCTTGTTCATCGCTCTGTTTGAAATTGCTAATACATTTCTCCCCACTTTTGATCATGAATGAATTTTTAAAAGACCTCCCA--------ACTCTCTTTTGAAGAGAAAAGAAAAAA---AAAAACTTAGGCTACCAAAAGAGCAGTCACTCTGTTCTTTCTGTTAAAATAAAATGAACTAGAACGGGTTGTTCGCAGTTCCTGTCTTAGAAAGTGTAGAAGTCTAACTAAAGAGCTGAGCACAGAAGCTGCTGGGAGCGTTCACAGATACCTGATTTTACAAGTTTTTGTGAAA-GAGCTCGCCTGTA-ATGTGTGTTACTCCACCATTTATGAGGGTTGTTTGTCAAGACAAAATATAAGGCGCCTCCTCCCCACAAATTAAAGAATCAAGTTACAATCCATTATTTCATTTCTGATTGTTTTTCTTGGTAATAAGTGGGAAAGTGGATACTGGATAAAAGTCTTCATGGAGCTAAAAAGACTCCGACATTAAAGGCTCCAATTAGCTATAAATCAGTTGTCTTTCCTACTGGGGTAGAACAAGAGAGAGAAG--AGAGGGGGTGGCTAGAGAAAAGGAGAATTGGAGGAGCTTCCAAATGAAATTCTGAAAAAAGATATCTACTGCAGACTT----------TCAGGGGCTGTTAAGATAATCTGATCAAAAGTAAGTGTAAAACAAACCCCCGGAA---------------TCACGTGTGGATCTTGCCTTTTAAGATCTCT-AAAGCGCATCTGAAGAGGTTAGGGACCCTCATAAAACAAAACTTTTATG-TGCAGGCTTCCCTGGCTTGTTCCTAAACCCGGAGATGTGCCACACACTGGCACTATTGTTATGCAAACAATGCCTAGAGGGCTATAACCATTAACGACCTCTCATTAAAATGGCTTTCAAAAATTTGTCACACCATCT-AAAAGCTAACAGGTACATTAAATCCA----------CATTCAAAAATACGAATCCTACAAATCCTTATTCTGAAACTCAATGCAACAAAAATTCAGAAAC-GAT--GTTTTT----GCATTTCTCTTTCAACCGT-------------AACAGTTGTCACATGCGAACAACTTAACTTCTCTGCTTTTCGCGTATAGTGTAATGCCCGCGATGG--AACACTTATCAGCTGTATCGTGTGCGCGCG--CTGCAGTT------AACTGGCGAGAGTTTGCGGTAGGAATGAA---AATCAAATTAAAA---AAAAAAATTCTAAAATGAACTCTCAAGAAGTGTGGCTTTAAAGGCTACAGTCGCCTTTT-------------TGCTATAACATTCAATCCCTTTGTGTATGTATTTCACAAATTTCCCCCGTGGATTTTTTTTCCCTGAGAACGGTGGAGTGGTAGGGGA--TCAAGTCACA-TGGGGCAGCAGGCGTGTATTGCTTTTTA--ATGCAGTTTAACAACAA-TAATTCGTGCTT-GACAAACTAAGATGTCAGAATTCGTTAGGAAAAAAATCATTAGGCTTATCAGTGCAAAAGTGAGCTCGCTAATTTATGTGACTTGAGTTATTTTCCCTTTTTCT----AAAATGTCCATTGCCTACAAAATCCCGAGGAAATCCTGGCA-TAGACCTACTGCGTCTC---GGCCAGGTCCCCGCGAAGTCTGTGGGACTCCGGTCCTGACAACCCTTCAGCGACTCCGCTCTGAGGGAAGATAAGCCCGCGC----------GGCCGCGCACCTCCGGACCCGAGGGACCGCGGGGCGACACCGGACCGCAATGCCACCCTGGCGGTGAACCCCACTCTGCTCTGAGACCGAGGGACAGGGAGAACTGCACCCCGGTGGGCTCTGAGGAAACCCAGGGGAACACCCTCCTCAAGCCAGAGCCCGGACTGCTCTGAGGAGACCTGGGGGACCCCAGAGCCAAACTCCATTTGCTCTGATAAAACTTGGGGGCTCGCA-CAACCGGACTCCGGTCTGCCCTGAGCTCTAAGGGACCCCAGAACTAAGCCTCGTTCTGCCCTAGGGACATCTAGGACCGGACCCTAGCCGGCTCTAAAGAGTCATAGGGGACTCCAGAACCAGACCCAGGTCTGCTCTGGGAAATCCCACCTCCCCAGGCAGTCCCGAGGTCGTCACCACCGTCCGCCGCCGCTGGCGATCC------CCGCGCTGCCTTCTGTTTGGGACCGGTTCTCCCAAGACGC-TCCCTAAACCGGGGCGGGACTTGAGAAGCCC--GCATCGCGGTCCCCGCG-------GAGGCGCGGAGATGACAGGC---------GACCTCCGG-----------GCCCCCGGCCTCTGAAGGGATCCAGAG------GATGCTTCCAGAAAGCGTCCGCCGGACG----------------GCTTTACCTTGGTGTACTTGATCTCGAGGTTGGGCGTGGGCGACGGCAGGAGCTGCAGCGAGGCCATGAGCGCGGCGGGGTCGGCCTTCACCTCGCCCGGCATGGCGATCTCGCTGGAAGTCATGGG-------------------CGGCCACGG-GTGGG----------TGTgcgcggggcgctgcgcggccggggcgcgcTCG-CTGTATATAGGCAGGTGTCAAGCGGGGGGCGCTTCTTATTGGACGTGCGGCCCACAGGCGCGGGGGGCCGGCCCAG------GAGGAC-----------------ATTTGCATACGGCC--GCGCGCGGCGCC---------------------CGCACGGTCAAGTCCG--CGGCCCACGCTcccgc---ggg----cgcgcccggggggg-----------------------ccTCGACGGCCGGAGCG-------------------------------------------------------------CAGCCTCGGCGGGA---CCGCGCTGGCCGATGGCA-----------------------------------------------------------------------GCCCCGCGAGC----CTTAGCGCTGGTCGG------CCGGG-------------------AGGAGAggcgcccga-gccgcggc------------cccgccgagccccgcgcccTTCCTAACACTCGCTCTTCTCCTCCCCCGGGGTCCCGAGCAGCCCGAAAGAGCTTTCG--CTCAGCCTTCCGC--GTGGCGCGAG----------------GGGCG-------------------------CGTGGCCGCTGGGTGGG---------GTGATAGATG-------CTCCCCAC-ACTCCCAAGGAGAACCTTCTGGAACC-GCCGACGCCGCGCTGGCCCCCACCAGGCTTCT-CAGCCCAACTGCTGCCCTCTGCCGGCCC-----------CGCGGCCT-AGTTGTGCC-------TGAGGCCGTGG-------------GCTTC-----------ATCTGCCTTGGGTTGCCTGGATATTCCAGGTCTTGATGGTCTCCTTCCAGC------CCTTTCCTTTCCTCTTCCC-ATCCACACCGGGAAACACTTGG----GATTTTCTGTTGCTCTTCCTGTCAGAATCT s bosTau2.scaffold3844 50501 5261 + 74535 AAAGGAGTTCCT-TCTTAAGTTGACCAG------TTCATATTCTCTCCATGTTTCCAACAGAAGCAACACATAAAAATAAAGATTTAAACTTTTTCTCaaaaaaaaaaaaaaaaaaaaGTATGAGACTGTTAGGAAAAACAAAGTGTATGGTGAGGCAAGCTCTATCAATTTTTCATAAGTCTAGGCCAAGGTCTTCCTTATCAATTATTCCTATCTCTTCCTACTCTGTGTCCTTCAAAAGCTTTTGCAAGGATCTAAGATA----CATATG---AAAGTGCTAGGTAAGCCCTTAGGCTCCATCACAATGTAAGTGGCATTATAAATGTTATCATTATTGTTATTATTACATCAATCTACTGAACTACTGCCATGCTGATAACCAAAATTTGGCATTCCATCTTTCTAAAAAGACCCTAAGCTCCTAGGAGTTCGATGTTTCTTCCAGAGCCCAACCAGTGTAATGAAAAGCACTATTAC-AGGAAGACAGCCACTTAAAAATTCTTTGAACTGAATTGAAATTGATCCCAGAAAACAGTAGATGTTCAAGAAAAGGTTGCTAAATGAATAAATAAAAGAATAAATAATAGTTGCCCAAA-GCACATTAGCTCTAATTTT--CAGTTTATTGCCTTCTATTTTTTTTTTCCTTTTCTAGTTCAGTGGGTCAGTTCTCCATAACCCTCTTCTT----CCCTATGTCCTAGCTCTCCACAGTATCAAATCCTGAAGGAAAATAAAACTACTACTAAAACAAAACAC-TACTCTTTATGGTAGTGTTCGTTATGGGCATAAACTTTCATCGAAAAAGTCATCAACAGAGAGATGGCATAATGATTGTGTGTGTGTGTAGTGGGGAGTTGGGGGAAGGAAGGACTAGTACAGCCAGAAAAGATGATAGAGACAAT-AGAGAAGGTAGGG------GTGGGATACAGTCCGAAAATTTCCAAAGATCTGGGAATCTG------GAAGAGA-------------------------------TCTCCCCTGAAGTTAGGGGCAGTC---ACCAAAGTGC-AAGCCTTGATTTTATCATATGTATACTCCTACAATATATTCATATATACAAAAATTTAACAATCAGACTGATAAAACAGGAACAACTCAGAAAAATCTTTAATCCATAAAGGCACAGCTAAAAACAATCACGCTCACTCCTGTGCAAGCCATTAAGCAATCTTCTCAGGATACAAGGAAAAGAGTGCACATTTTCCTGGCCCCAAAGTGGTCCCTTTGCTACTTCATGTTGGTGGAGTTATCAGTCTTTCTTGACTAACAGTCTGCAGTTTTTTGTTTTTTTTTTTTTTTTGGTTTTAACATAT--------------TCCTTTAAAAAGAATCAGTTTTAAAACTTGTTGGGGGTCTAGCTTGCTATATTAG--GGAAATAAAATTAGACATATTCCCAAAATGGTA---TTACTGATCATTAGTCCTAAATGGGTGTTGAAATTTCAGAGAGA----TAGGCTTATTTTAAA---AATTAGATGTAATTGCCTGAAATTCAACACAAAACCACGAGTTTAGCCCTTTCAGCATTCTTGGGGATTGAACTTTAATTTTGGAGCATTTT--------CACTGGATAGACAACAGCCGTAACTTT-TATTTCTTATGGTCTCCTTTACTCCCCTTTTATAAAAAATGTAAAATACTTTTAGAAGAAGAAAGAAATGG-TGAAAAATATATAAAAAAATAACATCACAAGTGCAAGTT-TTCTGAACGCATGGTACTTAAAATTCTCAAAATATAACCATTTACATGTA-----AGTATGACTCTATTGGTCCTCAGACAATATTTTAAAATCCTATTGTTACATATCCTTCACTAAAATTATTCATTTAACAAGACATAAATTATTAAGGATCCATCTATATCTATCTGGTACCATTTTTTGATATAAATACTGTATTTCTTTCCTATGTGTTATTCAACAAGCTCTCTAG-CATAATATTTTAGCTAGTGCCCTTTTAAAAATTCCT--ATGAATGTGGTATCACTATTCTAAAGGACCAACTGCTGCACCTTGTTCATTCTTCTGCTTAAAATCACTAGTATAACTTCCCTCGCTTCTGAT---AAGTGAATTTTTAAAAACCTCTCCATTAATCTTATTTTCCTTTTAAGTAAAAAATCATGGCCCAGTACCCTCGGCTATCAAAAGAGCAGCT--TGTGCTCTCTGTGTTAAAG----ATG--------CTGCTTGCCCATACCACTTGTCTCAGAAAATTCAGAAGTCTCACTAAGG-GCCAAGGAGCAAAGCTGCTGGGAATGTTCACAGATACCTGATTTTACAAGATTTTGTGAAAAGAGATTGCCTTTAGATTAGTTTTGCTCAAT-GTTTATGAGGGTTGTTTGTCAAGCCTAAA-ATAAGGTGCCTCCTCCTCACAAATTAAAGAATCAAGTTACGATCCATTATTTCATTTCTGATTGTTTTTCTTTGTTATAAGTGGGAAAGTGGATACTGGATAAAAGTCTCCCCTGAGCTAAAG-GACTCC-ACATTAAAGGCTTCAATTAGCTATAAATCAGTTGTCTTTCCTACTGGGGCACAACAAGAGAAAAAAGGAAGCGGGGGTTGTCAGAGAAAAAGAGAGCTGGAAAAGCTTCCAAATTAAATTCCTA-----GATACCTACTACAAACCTAAAACTCCATTCAGGGGCTGTGAGGAAAATTCAATCCAAAGTAAGACTAAATCAAACCCTCCCAAATCTGAGGTCCCCCCTCCAGCACAGCTCTTACATCCCGAAACCTTTTAAAGAGAACCTGAAGAGGTTAGGGACCCTCATAAAACAAAACTCTTATGCTATTCGCTTTCCTTGCTGGTTCCTAAACCCGGAGAAGTGTCACACATTGGCACCATTGTTATGCAAACAATGCCTAAATGGTTGTAACCATTAACGACCTCTCATTAAAAAGGCTTTCAAAAATTTGTCACACCATCTAAAAAGCTAACAGGTACATTAAATCCATCTAAATTGGCATTC-AAAACACGAGCCACCCTGGTTTTTATCTTAAAATTCAGCG-GGTAAAATTTCAAATTCTGATGGGTTTTTAAAAATATTTCTCTTTCAGTCCTTAAGACAAAACCAAACAATTCGTTCCTGGACAAAATTCAGTTTATCT---------------TGTAATAAGCATGATGGCAAACAACT-TTAACCGTGTTGCGTGAGCGCAGTATGCGTTTAGGTTGAACGGGCGAT-GTCTGGAGTAGAAATCAACGGAAAGGAATAGAAAATCAAGACAACTGTAAAAGGAACTC-CAAGAAACATTATTTTGAA--TTGCATCTATTTCTCTCTCACACCCCAATGGCATAACA-TAACCTCCCCTGTATGTGTAATCAATACATTTATTCTATGTCCAATTT------------------GTGGCAAGTAAATTCTATTTACATTAAGGTAGCGAACGCAT-TTCCTTTTTATGTTGTGGTGCAACAAAAATTAATTTCTGCCTGGGTAACCCGAGACGTCAGAGTTCGTTATAAAAAGCATT-TTTTTTTTTTCAGTTCAAAAGCAAACCCGTTAATATGCACGAATTTAAAGACTTCTCAAGTTTTCCAGGAAAACTGCCACTACCTACAAAATTCGAATAAAACGCTGATATTGGATCTACTGTA-CTCAGAGGGCAGGTTTCCATGAAATCTGCAAAG-------------------GCGGCCGCAGCGCTGTGAGCCTGGACGATCCTATGCGACAGTCGCTGGCCGTGCCCCGCT--------AGGGCTGCGGGGT-------ACCCGAGACGGTCCCCTGAAGGTGGAC---------------GGCCGAG-----AAGAGACTGCCAGGCTGCTCGGCC-------AACCCGGCGGGGAACCCTTC------------------------GAGGAG---TGGAAG----CGGTGCCGA----CGCCTTCTC------------------CGCAGCAGTCGGGGCCCGG----------------------------------------------------------AGAACCGGAC-------------GAGGAGGCAGCGG------------CGGACGCGG------TTTGGAAAG---------------------------------------CAGCCGTTGACGGCGACTCTCAGGGCCGCGCGGCAGGCTGGCGGAGGCGAGTCCCC----GACGCGTCCCAAGACCCCGGCGGGACTTGAGTAGCCCCAACGCCGAGGACCCGGTGTCCCTCTGCTGCGCGGGCTCGACGGGCTGGCCCGGAAAACCCCAGCCCCACACCCCGTCCTCACCCCCTAACAGTCCACGGAGAGGAAAGAAGGTTCTGGAAAGTCTCCG-TGGACGGCCGGCCCCCCGTGGCGCCTTACCTTGGTGTACTTGATCTCGAGGTTGGGCGTGGGCGACGGCAGGAGGTGCAGGGACGCCATGAGGGCGGCGGGGTCGGCCTTCACCTCGCCGGGCATCTCGATCTCACTGGAAGTCATGGGGGCGGGCCGAGGTCTCGCTCGCCCGCGGCGTGGGCAGTGCGGGCTGTGCGCGCGGTTC-GAGAGCCGGGGGCGCGCTCGCCTGTATATAGGCAGGTGTCAAGC-TGGGGCTCTTCTTATTGGACGTGAGGGCCG-AGGCGCGGGGGGCTGGTCCATCCTACCTAGGACGCCCCGGCGCAGCCCCGATTTACATAAAGCCCGCCGCCCAGCGCCGCGCGGCTCGAACGCTTGAGACCCACGGTCAAGTGCGCCCGCCGCACGCTCTCGCCCTGAGCACCCGCGACCGCGGGGACCAGCCCACGCGGCCGCCGCAGTCCTCGACGGCAGGAGCGCAAACCTGCGCCGCGGCCACTCGGGGCTCAGCCGCCGGGACTGGCCTCTCTCCGGCCGGGACAGCGTCGGCGGGAAGCACACCTTGGCCGATGTCGGGCGCCCGTCCCGGCCGTGGAAGCGGAGCGGGGGGCTGGCGAGGGGACCGGAGCGGCCCGGCGCTTACTCTGCCCCGAGAGCGGGACGCGGTGTCGGTGGGAGAAGCCCGGGCCCCGAGGGGTCCGGCCAAGGAAGGGGCAACCGACGCTGCGGCCGGCACACAGATCCCCTCCCGCCCCG-GACCCGCGGAAGCCCGGCTCCCCTTCTCTCCCGGGGACTCGCGGGACTC-------CCTCCGGTCTCCTTCTTCCGCCAAGGGCGCCAGGCCCTCCGCAGCTACCGGGTGCCCGCGCAACCCACTTCCCGTGCGCCGTGGCCACAGGGTCGGGGACGGGTAGTGGTGAGCGAGTTTCTCGCCCTACTACTCAAAAAGAGTGTCCCCGCGAGCCTGTCGACGCCGCGC-GGCCCTCGCCGGGACTCTCCCGCCCAGCTGCTGCCCTCTGCTGGCCTGGACCATCCCGGGCGGTCTGGGCTGCGCCGGGAGGATGGGGCCTTGGGGAAGACAGGGCTGCTCCGCGGAGTTGCAAGCTGCGTTGGCTTTTCTGGTCCTTCCTGATC-------CCTCTTTCTAGCGGGAAACAGGGACTCTCCTCGTCCCAAAACACACAAGGATACAACTAGTTTTGTTTTTCTGGAGTTCTCCACGCTAACAGCT a score=8853 s mm7.chr9_random 3086333 644 + 9745104 TTGTTCAAAGGTGTTTTCCCCATCTTCCAA-GCAGGGCACCATGCTGGAGGTCACTTTAAGACAAGATGAAGAGCCTTGCTCCTGGGTAAGCTCA---------CCACCTTTCCTGTAGATCTATAGATAACTGT------CTGTAAGAGGGACAGCTCTCAAAAGTGGAGCAAAGACAAGACCTTGGTGCTCCACCTAAGTGGGAGGCCGGGTATCTAGGGAAGCTGACCTT-----TTGCCCTGCTTGTGGCTAGGGAAGTGAAACTTCACTGGTAGAGGTGGGAGCACTGCTGCCTCCGCAGAGGCTGCTGCAGCAGCAGCAGCTGAACAGAACTGTTTGGGAATGTTTCAGGGAGCATCGGCTGCAGCTGGAAGAGCAGCAAACGAGGCTGGTAAGTCAGTTAACTCCAGGTTGTGGGAACCTTAATGCTTCTGGGGAACTTAATGATGGAAGTACCGAAAAGCCATTAGAAGTCTTTGAGGAAGAAAGAAAAGGGGGAATCTTGTGGGC----CGGATGGCTGAAAATGGTCTGGAAGGAGTGT-------------------------------CTGAAAGCATAAGCCAGA-ATTTGCACTTTTGACCCAACTCTTCCATTTCTTATTTGCTACCTGCAATTGGAAAGGCCAGTCAGTATGT-------GGATCACA----GGATTTATCAACGCTTGATGCAGA s bosTau2.scaffold3844 56471 655 + 74535 TTCTACAAACATGTTTTGAGTGCTTTCTGATGCAAGGCATGGTGTAGAGACTGGGTTACAAATAAGAC----AGCTCTGGACTCTAGTGAGCTTAAACCGCCCCCCCCCCCCCCCACAGAGAGGGAGATGACTATGAGAGGCTGT--GGGGGAAAGTTACGGAAAGAGCATCCGCAACACCATCTGGGTGCCCCACC-AAGGAAGAGGCCAGCTCTCTGGGGAAACTGACCTTGGAGGTTGGCCTT------AAAAGGAAGGTCAGCCTTCAGCA-TGGAGAGGAGGACA-----GAATAGGCAGAAGAGTCCACAAGAGCAAAGGC---ATGGAAATGTGTGAATGCTTTTCAGGGA-CATCAG-TGGTGCTGGAGAAGCAGCAGATGAGGCTGGCAAGGCAGTTGCCTCAAGGTTGTAAGGGCCTTAACTC----GAGACACTGA------GAAGGAC----AAGTCATCAAAAGATTCTGAGGAAGA--GAAAAGGGAAAACTGTATAAATTAAGCTGATGAATGAATATTATCAAGAAAGACTGTTGCAAACCAGAAACCACTGATTTATATTCTCCTCAAAGTATAAGACAGGGATATTCACCCTTGACCCCACTCTG---------GTGTGCTAACTCCAGTT--------CCATCACTGTGGCTGGAAGGAATGACATGTTAGAGTTATCAGCATTTGTTACACA a score=74111 s mm7.chr9_random 3087280 2327 + 9745104 GGGTACAGAGCACATTTTCTCTGTAAGTTCTGTTACTTG--------------TCCCATCTTTTACTATGCATGTTTACATTGAAGCATTT----GCACAAATGCTTTCCTTCCTG-----TATTTAGACTGGAAAC-----CCCTCCAA---------ATCttttttttct--ttttagatttttttttattatttattatatgtaagtacactgtagctgtcttcagacactccagaagagggagtcagatctcgttacggatggttgtgagccaccatgtggttgctgggatttgaactcaggaccttcggaagagcagtcgggtgttcttacctgctgagccatctcaccagcccACCCCTCCAAATCTTACACTCAAGATTATAGCCTCCTTTGGACTAACAGCTTCACTTCAAGGTGGGA-ACAAAATTTAGCAGGGAACAGAATATTGTAGCCATGATACTTCTTTAGTCT-ACTTGTTGTAGACCCCCAGGATGTATGTTCCTCCATGTTCCCTCCT-----------CTCCATATCTCTCCTCAATGTTTTCTTTCTTTTTTCCTTTTTCTTTATCATCTTGTTTTGCCAGTCTCTTTTCCTCTATAATTTTGGGAAACTGTCTTCCTATT----GCTAAGTTTTTG-------GTCTTTGCCGCTGATTTGGTTAA-ACATATTTTTTCCCACCCTTACAACATTTC-TCCTCCCAACCTCCCCAATCTGTAATTATTTATTGTTTAGGATACATCTCATCTGAAAACTCCTGCACCAGGTAACCTAAGCTACAGAATGCT------GTTTCCTTGTGAAAACAATTTATTAGGCCCCGTGGAACCAATATCCTGGAGTTGTAGAGGAGAAAAATAAATTCTTGCCTCATATTTCCTCACCTGAAACATGGAACGCAACGTTGTAATTTCGAGGCCTGGGTTTTATGTGAAGGTCGTCTTTAAGGGATACAGCCATAACAATTTGGGCTGCATAGCAGA-CGCTTTTAAGACTATGCAAGTATTTATTA-----AGAAGTGTGCTTTCTAAATCAACAAAGGA-ACTGAGTGGGACCTAAAGATTCCTCTCCAGGAAGGTACCTTT---GTCTCAATGATAGCTG------------GGACATCGAGCCTCTATGTTCTGGAAGAGTCTCTGTGTCAGATGG-CCGGCTTAATGGCCTTCCCATTTCCATCACTAACCATGTTGACAGCCTACCTTTTCCAACTGATATGCTGGCATTGTAATTTATCTTCAAAAAAATAAATCACATGTTATAGCCTTTCTATCATCTGGGTTAATCGAATCAGTTCCTTAAATGTCTTTAAGTCTAATGATTTGAAAGAGGCACATTGTTTGaaatattaaaaaaaaaaaaatCAGGGCTCTTGGGTTGTATGCAGAATGATCTCAGAGCTCATTTCAAACCTAAGTGTCTCCTAATGGTCTCATCCATCTCCAGTGGGATGGGCCTGGCCACTTTATTTAAAATGTTTCCTGAAAACTC-TAACGGACAAGCTTAACACAGAGTATATTTAGAGTGAAAT-ACATTTTATTCATTAACAAGAGCTTTTATAAAGAGCTTTACCTATTTTTATCCAGAAATGTTTAATGAAGTATTTTGGACCTATTATGAAAA-TTCTATAAAACAAATGCACTTAT----------TTAACATCAATATTAACTTTTTTATTGGCCATCTAAACACCCATTTAATTA-GCTCTTCCTCCTAATGCCCAGAAG-----AGGCTGAGATTGGACCATTTATTAGCTATAAAAATTCTCTAGATATTAACTCCCTCGTTCCTTACTGTGGCCTCTGGTCACTGTATTCCATGGAAAGGATGATCTTCGGCTGCAGAACGTGGGTGACTAGCTGGTTATGACTTCA--------------ATACAGAGCACAATACTTTCCTTTTGAAAAGGGTCCTCCATGTTTGGGGGACTCCAGGAGATGATTTTAAAAGTGGG---------------TTTTGTAATACCCATTTCTACTTCATATACACATGACAGTGAGTCATCAAGGTATACAGTTGAGCTTTGTGTTTTATCAGTAACCACCCTTTAAAAGAG--GGAAGAAATGAAGATCCCAGC-AGGCAATCTTTTCTGCCAGGCCTGAGG----AAAATGGCATCAGCGCCCTCTGCAGCTGATGGTGTGTATGTGCAGGTGAAT-----------------AAGAGTTTTAAGGTTCCTTGTGTTCTGTCTGATGCTAAGACG-----TCTTACTAGA--------ATTTCATTTGAATTAATTTGCAGG--AAAACATCATGGAGATTCAGAAACATTTTAGACAGAAGATGGTTTAGAAGGAAGACTTTCATTAAAATATCTT---------------AAAAAATA----------------AAATTTGCCATAGAGAAT---ATACTTAGAACCTGCTCACATCGACTTTTAGAGACAGAGTTGTGTGAATCACAGATTAGCCACA s bosTau2.scaffold3844 57361 2356 + 74535 GAGCAAAAAACAGATTCCCT----------TATTATTTGGGCCAGAAAGGATCTCTTGGCTTCTCCTAAACATTTTCA-----AAACATTTCTTCTCCTAAACAGTTCCATTTCCGCTGACTAGTTCAACTGTAAAATGAAGCTCTCTGATTAAGGGACATTTTCTCTTCCTGATCTTACATTTTGTTTTACATTTCCCCATCTTT---TACTATAAATTTATCTTTTAATA---------------------------------------------------GGTTTCTAAGAGTT------------TTT---------------TGTTGTTGTTTGTACAGTCATT-------CTCTTCCCCCCCTATCTTCAGCTCATGATTGTGGCCATTTTTTGTGCAAATTCTTTAAATCAAGATGGGGGACAAGATTTAGCAG--AAAAGAATAGTGAAT---TGCAACTACTTCAGTCTTGCTTGTT-TCTATTAGTAGAATTTATTCTTCT----GTTACTTACTTTTAAAGCTGCCTTAGCAACTCTTCTCA-TATTCCTGTTCTTTTCTCTTGTTTTATTGTCCTCTTATTTTCTC---CACAGATCGCACAGTGGTTGAAGTAGCAGTCTTTATCTTCAGGTTTAACATTTTGAATGTAAGTCTTTTTC-CTGGTTTAGTTAAGAAACATTTTTTCCCAACCTTATAATGTTTCCTTCTCCCACCCTCCCCCATCTGTAATTATTTATTGTTTAGGATACATCTTGGTTAAAGCCCCCTGCACAGGGGAACGTACACTACAGCATGCTCTATTTATTTCCTTGTGAAAACAATTTATTAGGCCTGGTGGAGCCAATATCCTGGAGTCGTAGAGGAGAAAAATAAATTCTTGCCTCATATTTCCTCACCTAAATAGTAGAATGCAAAGTTGTAATTTTCAGGCATCAACTTTATGTGAAGCTTGACTTT-AGGTATGAAACCCTAGCAACTTAGGCTTCTTTTCAGATTACAATTAAGGTGGGGAAAGTATCAGTTAAATCGAGAAACATCTTTTAGAAGTCAACGAGGGAGACTAAGTAGAGCACAAATATTCCTTCCAACGAAGGAACACTTCTGGTTTTGGCAATAACTGAATGTCCAGCTTGCATGTCACGCTTCCATGTGTAGGCGCTATTTCAGCCTCAGGTGGCCCTGCTTAATTGCCTCCCTGTTCCCATCACTAACCACACTGACAGCCTACCTTTTCTAACAGATACACTTGCATTTTAATTTATCTGC--AAAAATAAATCACACATTATAGCATTTCCTTCTTCTGGGTTAATTGAATCAGTTCCTTAAATGTCTCTAAGTCTAATGATTTGAAAGGAGCATGGTGTTTGAAATATT------TAAAAAATTAGGGCCCTTGGGTTGTATGCAGAATGATCTCAGTGCTTATTTCAGATATAAGTGTTTCCTAATGATCTCATTCATCTCAAATGGGATATGTCTGGCTACTTTATTTGAAATGTTTCCTGAAAACTCTTAACAGGAAAGCTTAATGTAAGGAATATTTACAGAGAAATGGTATTTAATATACTAACAAAAGC--TTATAAAGAGCTTTACATATTTTTATCCAGAAATGCTTAATGAAGTATTTTGGACCCATTATGAAAACTTCTATAAAATAAATTCACTTACATTTTTTTAGTTAACGTGAATATTAACTTTTTATTTGG-GATCTAAATGCTCACTTAATTATTCTTTTCCTTCCAATATCTAGAGGAAAAAAGGCTGAGATTGTGGCACTTATTAACCATAAAAATTCTCTACATATTAATTCCCTA--TGCCCAATGTGGCCTCTGGTCACTATATTCTATGAAAAAGAGTATTTATGATCGCAGGGAGTAGATTCCTAATTGGTCATGACTCCAAAAATCATGTTTTGATACAAAACACAATTCTTTCCTTTTAAAATATATCTTCCAGCTTTTGAGAACCTCAGGAGACCATTTTAAAAGTGGAAACTAGATTCCTCTTTGTTGTAAAGCCCAGTTCCACCTCATATATATTTTAGAGGCTTAAATTTGGTTGCAGAGATGAGCTCAGTACTTTATCAATAATCACACGTAAAAGGCGCAGAGAAAAATTAAAATCTCAGCTATGGAGTC--TCCTGATGGCCCTGAGGGAAAAAAAAGGCATTAGCTCCCTCTGCAGTTGATGGTATGTAGGTGCAAGTAAATATTGTCATTTAAAAAGCAATAGCTT--GGATTCAATGTATGC-ATCTGACACTGGTAAGAACTCTTTTATTAGATGTTTCAGTTTTAATCTGAATTACTTTAGAGGAAAAAAAATACTTGAGATTCAGACAAATTTTACACTGCAGTT------------AGACTATCATCAAAAGATCTTTTGTGACCCTTAAGAAAAGAACAATAGGGTTCATCAGCCAAATTTACCATAAAAGGTGCAGTACTTAGAACCT-------------------------------------ACAGTTCATTCACA a score=6164 s mm7.chr9_random 3089836 447 + 9745104 ATGTTTTC---CAACCATTTAAGTGCTTGACATATAATTCAAATCACC-CCCTCCCCACTTCATGTTCCTGAGTTTACATTTTTAAAATCCCT---------------CACCTCGATACAGAGTTCTTAGCTCTTGTTGCTTTCTGT-------AGAGCTCTGT-----------------------------------------------------------CATTCCTCTGCACACACTTCCTCCCAAGTGCTGGCTTTTTGTAGACATTCACCT---CCAAGGATCCTTGGGGGGAATAAGGTGTTCTCATGGGAACATCAGTACTGTTGGGGATAAAGACCCATATTCGGAGCCACTGGAAAACAAAACCAAATGAACAGTCCTTGTCCTCCCTTGTATCCTGGGAGGGACCGCTGAAAAGAAAATGAGGG--ATACTAGATGTCTTTGTAGCAGTGGAGGAAAGTTAA----TTACTTCTCAACTATAAATGTGTG---GAAGGCACAGGGCCAAAACAGGAGACATTCAAGGACAGGA s bosTau2.scaffold3844 59846 527 + 74535 ATGTTTTCCTTCACCCAGATAAGTGCTTGGCATGTAACTAAGCTAAATGTGCTCTTCTgttca-atccctgggctgg------gaagatcccctggaggagggcatggcaacctactccaatattcttg---cctgaagaattctatggtcagaggagcccggtgggctacagcccataaggttgcaaagagtcagacacaactgaagagactgagcatgatgcatTTTTAAATATATACTTCTTTCCCAAGTCTTTCTTTCCTTATACAGTCATTTAACAAGAGGGGCTTT---GGGCATAAGTAATCCTCATATGAAATTTGGTGATATTTGGGACAGGGATCCATGTTCATGGTCATTAGAATACAAGGTTAAATGAATAGTAATTATTCTCCTTTACATGGTGGAATGAGCCATTGACAAGATAATGAAGAACATGTTAGATA----GACAACAGAGGGGGAATGCCAGCCTCTTTCTTCTCAACTACACAGTTCAGTCTAAAAGCACAGGTCAAGAGTGTGAGGCATTCAGAGCCAGGA a score=6671 s mm7.chr9_random 3090283 429 + 9745104 CGTGGGCATCCATTTTGGACACCCAGAAGCAAACAACAA------GGTGCCTTGCTTCAGGCATGCATATGTCCCCCTTCAGGGGAACTGTGACTTCCTGTCTGCTGTTGATAAACCTGGA---AATACTAGTTTAT-----AAAGAGCAT-----GCACACACACACACCTATGTGACAT---------GTCCCTATCCTTGAATTTGT---------------AGTGCGTTTGAATGACAGTAACTAAATATGAAAAGCCATTGGCTAGCCTCAGGAGA----------------------AATGCAGAATGGTTGTGGAAGACAATATCAGAAAAGACAAAAGTCCCT-CAATTATTTCTGTAGGGCCTTCTGTGGGTCTCTTTGTACTTTCGATCACTATGGGAACAGATACAAACTCCAAAAGATAAACACAGGGTTTCCCAACATGAGGTCCAATAGAAAACTCCTGTTTTTGTTTTCCATGTGTATGT s bosTau2.scaffold3844 60657 488 + 74535 CACAGACATCCAATTTGGACATCCAGTCCTAGGTTACAAAGGAAGGGTTTCTTGATTCAGACATACATATTCCCCATTTCAGAGCATCTGTGACTCCTTGACTA-TATTGCTAAACCTGGATTTTTTTCTCGTCTATCAATCAAATAGCTTCAACCGAACAAATATTCATTGATGATACATTATGAGCCAAGCATCAGCATAGAGTCTATGAAGAACAAAAAAGAAGTGTG-TGGGATGACAGTAACTATATATGTGGAACAATTCAAGGAGCATATGAGACAGGAAAGAAGTTAGAATACGCAGGGCAGAATGAGAGTGAAAGAGGATATCAGAAAGGAGACAACCTATTACAAATGCTTTTGTTGGGGTTTCCATAAGTCT-TAAACTCTTGCAGGTGCTATGGA---GGACAGAAGACACAAGTGATGAG-GGAACATTTTCCAAAACATGACCCAACAAAGAACTCCTTTGACATTTTTTAGTGTGAAGGT a score=3334 s mm7.chr9_random 3090973 115 + 9745104 TGTGATCCATTGCACTAACTATAT---AAACTGGAATCCCCAGAAGCAAATGCTGGGCACTGACACCACTTTTAGCTTTGCAGATCCAAATGTTGTGATCTTAAGTGGGAGACCCTTT s bosTau2.scaffold3844 61151 118 + 74535 TGTTATCCAGTAAGTTAACTATTTGCAAAACTGAAACTCCCAAAAGCAAACACCTGGGCCTGGGATTTCCTCCCATTTCCCAAATCCTAGTTAAATATTCTCAAGTAATAGACTCTTT a score=33313 s mm7.chr9_random 3091763 1177 + 9745104 CCACAGCCTCTAGGTCGGAAGCTCGGGTTCCGAGGCCAGCTCATTTCCTACTGCACTT-GCTTTGCTATTTTAAATTTAGTATCCGAAAAACACATCGAGCCTCAAATGGACTGACCTTTCCGCTAATGTACTTCACCTAAATTAACAGAGACGATTAACTAATTTACGCTGGAATTGTGCACTTTCCAGTGCACATTTATCAACTCTTAAATGCTTGCTTTGGTGTTGCaatttaaattttttattattaCCCTTTAACTCTGAAGAAATGTCTTCCATCTAATTAGTCAAACTTACATATTTAATTAATAGATTCATTATAGGCTAATGAATATGGAGGCGGCACAGGGGCAACATCTGCTTGCCACATGAA---ACTCAAAGTTTCCAGCTACAAAAAAAAAAAAGGGAAGCAATCTATAATGTAATTTAAGCA-CATGAACTTTCCATT--------------------TGAGAGTCTC----------------------------------TGTTCAGAGATAGCTCCCTTTTTGGAAGAATATGGGAATCAAGACTGAAAGAGAA----ACGTCTGAAAACACATTTTTTTTAATACCGCAAAAATGTACAGGTCTACATCGTCATTCTAAACAATAACATTTTTCTAATGCAAAAATTTAAAATACTATATGCTTAGGAAAATATACATAAGGGCACAATTGGTATTACAAATTAAACATTGTAAATACTTTATTTTCTTT--TATGTGTGCATGTATCCCCTGTTTTATATATCAGTACCCCTCCCTGAAGGAGCCCCGGGAGGTGTtagaactggagtct--taggctgctgtgtgctaccatgttggtgctgggaatcaa-------------------------------accctgatactctggaagaaaagaagtgactttaaccc---------------ccaaaacattcct----------------------cagccccCCA--------------------------------AATTTAGCATTTCTAACTGTAATATGTACTAGGCTCAT-TCCAAACTCATGTGATTTTTGCAGCATGGAGCAGGTGTGTT---------------AGCTTTCTTTAGAAACTAGATGCTCCTAAATTCAGTTGTGTCTGGAGTGCAGATGATTCAGGGAACACAAATGAACTTGCAC-ACGTGTTCAGTTGTCAGACTTCTGGCTGCTTATTTCTCTGGCTCCG---AAGAGGTCATCACTTGCTGTCGCTAAGGAAAGGGGCACCAACTTCAGGAAATGTGTGTGAGGTCTGAAGTCCGCTTGAAAAGTTGATAGTGCGAAGAATGCCAGG s bosTau2.scaffold3844 62120 1296 + 74535 CTGCCGTCTCTGGATTGGAAAAGTGGACTTCATG--CTTCTCACTTTCTAGTGTTCTTTGATTTGCTATTTTTAATTTACTATTTGAAAAACACATCAAGCTTCAAATGGATTGACCTTTCTGCTAATGTATTTCACCTAAATTAACAGAGGCAATTAACTAATTTATATTGGAATTGTGCACTTTCCAGGCCACATTTATCAACCCTTAAATGCTTGATCTGGTGTTTCAGTTTAAATTTTTTATTATTACCCTTTAAATCTGAAGACATGTCTTACATCTAATTAGCCAAACTTACATATTCAATTAATAGATTCATTACAGGCTAATGAATATGGAGACAGCACCACGGTAACATCTGCTTGCAGGTTGAAAAGACTCGAACTTTTCTAGTATGAAAAAAAGAAAAGTGTCTGTTGTAT-ATATAACTAAAACAGCTTGAGCTTTCAGTTTTTGGCATTTCTGCATACTGTGATGTTCTCAAATGGGCCGGCTAACCTGGGAAAACCAATATATTGTCCAGTGATAGCTGCCTTCCCAGAAAAATATAGAAATCAGAATTGCAAAACAAATACACACCTGAAGACAC----TTTTCAATA---TGAAAATGTATATGTTGAGACTGTCATCTCAAATTATTAAGTTTTTCTAACCTGAGTTTTTTTATTA--AAATGCCTAAGATAATAAACTTAGTAAGGAAATTAATACTATAAATTAAACA----AAACCTTTAATTTACTATAGTagaaggcaatggcacccc--------actccagtactcttgcctggaaaatcccatgga-----caga---gaagcctggtaggctgcagt------ccatggggtcgctaagagtcggatatgactgagcgacttcactttcacttttcactttcatgcattgga--gaaggaaatggc---aacccactccagtgttcttgcctagagaatcctagggatggtggagcctggtgcactgccatctatggggttgcacagagtcggacacaactgaagcgacttagcagcagcaCCAGCAGCATGT--TAGGATCATCCCCAAATTCATGTGATTTT---------------ATGTGTTTAAAAATACGGCCAGACACTATTTTGGAAAGTAGATGTTCCAATAGTCAATTATATTTGGATTCTAGAAAATTCAAAAATCTGAAATTAATTTCCACAATATTTTCAATTATTAAAATTCTGGGGTTTCCTTTCTTTGGCTATGTAAAACAGGCAATT-----TTAATAATTATGAAAAAGCCGTGAGTTTCAGGAAAGGTGGGTGAGAGCTAGAATTCACTTGAA---TTAGAGGTGGCAAGAATGTGAGG a score=3459 s mm7.chr9_random 3095622 148 + 9745104 AAGTGAGAAATTGCAATATCCTTGCTATAGTACTATGTGTTTAGAAAACA-----TCTAAAAGTGAATTAGTGCAATGTATACATGTTTATAACTAAAAGTCTCCCGTATGCTTAGCATTATTGGCTGTAAAACCAAATGTGGGTGGATGAAA s bosTau2.scaffold3844 63633 147 + 74535 AAGCGCAAAGTCCCAATATCCTTGTTAGAGTATCAATTGCACACTAATCAAATATTCTAAAAACGAATCACTGCAATATTTGTGTGCCTCGTATTGATGGACTCTCATGTACCTAGCACTG------GTAAGACTTCCTGGGAGTATGTAAAA a score=8485 s mm7.chr9_random 3096064 927 + 9745104 TGCATT----TTTCTAGCTATAAAAGGAAAGTAACTC------TTTATCCAAGAGGCCATGTGGCGTCTATTCTTAAAACTGTGGAATAAGAAAATCGGGTACCCTTGGGCCACAAAAGTTGTGCTATGagcagggcacagcagtgcgtgccattgatcccaccactggaaaggcagagacaaacagatgtctgagtttggggtctggtctacatagaaagttccaggccagccagggatacacagtgagacccggtctcaaaacaaaaAGCTGTGTCATAAGCGAGATTTGATTATGACACCTTCACAATCCTCAACGAACAAGCGAGCACAGCCCTATTAGAAACTGGGGAACAGAAAGAGTCATGGTCTCGCATTAGGAATGCTGTGTTGAGGCC-TTGGGGGGCACTAAGGTGACATTGTGCTCTGAATGGTGTGCAATGCTGTGCACAGCCCCAAGAGAAAAGTG---CTGTCTACCTGAGAATTAGAAAGACAGCATTGGAACTGAACCTAAGTGATAAGTGAGTGGGGGAGGGGCAGGCAGAGTAGGTAAGAGTAATGGGGTGGTAGAAAGACTAGGGAAACTTTTGGAAAGGTTTCATTACAATAAAACATACCCATAGGGGAAAGCCTGCTCATTTGTCTGAACGAGAAACCAAACGCTGG---TAGCAGAAGGGGAGGCTAGAACAAATCTTTCACACACCCAGGAATCTGCTTACACGATTCTATTACGTGAGGCAGCCAGAGGATACACAATCCCAGGAAAGTGTTCTGTGT--GTCATTGCCAGCCAGCCTTAT-AGCAGCTGGGCAAATGCAGCAAAAAG--------------GCATGGAATCAAAGGG----CGTCTGGGGGAGGAATTCCTGGGGCCATAGGAAAAATAAGGGGGGGGGGTGAGGGAGGAGGAGACAGAGTGATGAAAAGAAATGGACTGTGAAAGAC s bosTau2.scaffold3844 65993 727 + 74535 TGCATTATTGTTTTTAACTACAAAAGGAAAACAATTCCAATTTTTTACCTA------CGTCAGAAAGTTATTCTCAAAACTGTGGAATAAAGAATTAGGGCACGGTTGAGCTAAACAGGTTGTG-----------------------------------------------------------------------GTT---------------------------------------------------------------------------------TAAGTAAAATATGATCATTACATCTTCATAAT--TCAAC---CAAATAACCACAGCATTCTTAAGAACTAAAAAA-GTACATAACCATCATCTCACAACAGGAGCTCCGAGTTCAGGCCAGCAGGGAGCATAGTTGTAGCATCGTGCTCTACA-----------GACCTACAGAGATCAGAAGAGAAAGTGGTTTTGTCTCCATGGGAATCAAAAAGATGGCATTTGAGCTGTACCTACGTAATA---------------GGAAGGCAT-GTAGGCAAGACCAGCATGGAGGCAGGAAGAATGGAACAAA--CTGGAAAAGTGTAACTACCATAAAGGA-ATACTTAGGACGTAGC------------CAAGATGATAAGCTAAGAAATTGATTTAGTAGAATGGTGAGCTAGGGTAAATC---AACTCTCTTGCTCATCCTTTTACTCTGGAATATTATATG----GGTTAGGTGGTAGCAAGTCCTAGAAAAGTGTGATGTGTAAGTTATGGCCATTAAACATGGCAAATAGCCAAGCAAAAGCAGAAGAAGGTCCAAAAGGTCTATGCAT-GCATCAAAGGATTATCAGGTGTGAGAGAAATTCCTAGGGCAGT------------------------TGGAGGAGACCAAAAGATGATGAAAAAGAAAGGGTTGTGAGATAC a score=13163 s mm7.chr9_random 3157390 233 + 9745104 GAATTCTTTCCACTGTGCAGGAAGCCAGGGGATTTGTTCCCTGTGTCACTTTTATATTCCTTTTGTGTGGCAATTAATATTTAACTCCTGGGAAATAAAGCTGTCACCTGATATGCTGTTTATGGCCCTGCATTAAAATAGC--TTCCTGATAAGCTGCTGTAATATAGTGTTGGGAAGACCCC---GCTAGAAGGGGCTCATTTGGT-----TATGAGTTCTACTCAAGAACCTGGCCCTGT s bosTau2.chr10 5668454 240 + 70001009 GAATTCTTTTTACTTTGCAGGAAGCTGGAATATTTGTTCCCCATGTCATTTTTATATTCCTTTTGCGTGGCAATTAATATTTAACTCCTGGGAAATAAAGCTGCCACCTGATACCGTCTTTATGGCCTGGTATTAAAATAACTGTTCCTGATAAACTATTGTAATAAAGCATGGAGAAGACCCTCTGGCTGGAAAGGG---GTTTAGTTCACGTATTAATTCTACTCAAGGAGCTGGGTCCTA a score=38445 s mm7.chr9_random 3158657 1317 + 9745104 ACAAGTTTCTTTATCGTGTTG--------TCTTCATGACTGTGGGTCAATGAGCCTGAAGGTCACTGGCAGTTATCACTAAGAGAAT----TCCTGTGTATCTGAGGGCAAGGGGAGGCTGTTTG-----------TACCATAAAGGTGTCTCCAGTTAGCAGGATTCCTCTGCCATTGTGGCTTTGGTGG--TAGCCTTTGTC----TATACTACCTCTAGCTAGAGTGTGTCCTTGACAGAGAAGAAAAGGT--AGTGGGCACATTTGTAGTCACC----------------TGCCTG-TATCCAAGAGGTTTCACTAGG---CCTTCTTCAAGTTTACAGGTGATTAGAAGCTGTCCTCTGGGACTTTGCCTACCGATGAATTCTCAAATAACTTGCAAAAAAGAGGCGAAATAACCTGTTATGCTGTCAAAATCAATTATTGCAAGAGACAGCTTAACTTTTCCAGTCTTTCCTTAAGGGCCTCAGAGCCAGCCAGGCTGCCCTCTGCCCCAGGAGAGCTGGCCAAGG-AGACTTGTTGGCTCCAGCCACCTACCACC--------CTCACCCTCTCCTCTCA---------TAGCTTTTC-CAATGCCTCTGCCTTGGCTTATGGGGACAGGGACTCTCAGGAGCAGGAGACTGGGGGAACCAGAGGGGGAGAGTCAGCCCCTGAAG-----------------------------TGCTGGGAAGGCCCGAGAAGGTGGATCTTTGCAGTGGCTGAAAGTAAGATGAACATCTG-GGTCCCTAGAACCTTTATTTTGCAGCATTGAATGCAAAGGGCGATTTATAAATGTTCCCTTAATATTCCTGAAACAGATTGGCCAGTAATTTATAGACTGCAACACTGAAGACTGAATTAA-TTTCCCAGCGAGGAAAATCTGCTAGCGGCTTGAGGGGAGTGCTGTTCCTGGCTTCCCAGAGCAGAGCCAGA-AATGGCAGGACCAGGAGAGAAGATGtgcaggacagatttcactccctccatgttacaaatggggaaactgaggcccaaagtcacatggccagcccccaagtgagccaggcctagggctttggccttc-------tgcctccTTTAGTCTTCTGCATCCTTGAGTTCTTCTCTGT-TGGCAGGCTGCCATGTGCCTTCT-GCTTTGCGGGCACCTGCAACCTAGTGCTTCCTAGGGCAGGGGCTCCTTTCTCCTTAGGAGACTGAGGAGAACTCTTTACCTGACCCAAGGGTTGGAAGATTAAGATTAAGAGGCAAGGCCAGACAAAATTCTCTCTTGCATGACTGTACTCATGGGTGTGTTTGGTTCATGTGGACAGGG-actaacatatactgagtg----acctggtatgtgtaaggcacggggcaggactttgggTTCGCATTACCTC-TTTATAA s bosTau2.chr10 5668694 1398 + 70001009 ACAAGTCTTTTTCTCCTAGTTCATTCCATTTTTCATGATGACACGTCAATGAGCCTAAACATAATTA----TAATAACTGAGAAGAGAGAATATGGTGTATTTAAGAGATGGGGGACTCAGTCTGCCTCTCTTCCCTCCCATAAAGGTATTTCCAATTAGCGTGATCACTCTGTAATTATGGTGCCCATAACTTGGCCTCCGTCGGCTTTCATCACCCCCAGCCAGAGCATGTCCTTGATGTAATAGAGAAGGTGAAAGCGGCCCATTTGTAGTCACTGGTGGAAGCCCAGCTGTACCTGATATCAACGGTATTTAACTGGGAGACCTAATTTGAGTTTACAAGTGATTACAATCTGTCCTATGGGACTCTGCTTACCAATGAATTCTCAAATAAGTTGCAAAACAGTGACGAATTAACTTGTTATACTGTCAAAATCAATTACTGCAGAAGACAGCTTAAC-TTCCCGGCCTGTTCTC-AGGGCCCTTGAGCCAACACCACTCCCCTCGGCCCTGCAAGAGTGGGTCAGGACAGTGTGGCCCACCCCAGCC-TCTGTCACCACTGACTTCTCCTCCCCTCCTCCCCACCCTCACTTGGCTTCACTCAGAGTCTCCAGTTTGAATT-TGGGGAGCTGAATTCCCAAGAGCAGGGAGCGGGGG------GAGGGAGAGGAACATCTCCTGACATACCATCTCCGCCTTGAAATGATATTCTCTGCAGTGAAGGCTGGGGGAGATTGATTCTAGCTGGGGCTTTAAGGAAGATAAACATCTGAAGGCCCCAAGATCTTTACTCCGCAGCATTGAATGGAAGGTGCAATTTATAAATGTTCCCTTAATATTTCTGAACCAGATTGGCCAGTAATTTATAGACTGAAATATTGAGGACTGAATTAATTTTTCCAGTGCGAAAAGTCTGCATGCAGCTTTTGGCGAGAGTTGTTCCCTGAATCTCCGGGCagaatcagagaatgacagggtgagaagggactttggtgaggatgaattctaccctctccctggcacaagtagggaaacggaggcccagggtcacattgagagtccctagcagaatcagatctagagccctggtctccagacgtgttcttcatttcgtgccctGAATAAGTGAGTGATGCTCTGTATCATTGGTAACTA-GAGCCTCATAACCCTGAGGGGTCCTGC------TTGCTTCTCCGGCTTTTATTTCTTTTCTTCTCAGCAGATAGCAG---TTTCTTTGTCTGAATTAGGAGCTATAGGCCTAAGGCTCA-AGATTGGAGCAGGCTAAG-----------GTGGCAGACCACCAGAGTATGTGAGGTTCCAATAGGCAGGGAACTTGTATTTATTGAGttgagcacctagtatgtgtcagggccagggttgggcaccagatctacattatcttgttcataa a score=33628 s mm7.chr9_random 3160818 860 + 9745104 CAGAGTATTCCAGAGCTTATCAAGGCTGGTCTGTAT------CCTGGA----AAGGCCACATGAGGTCTCTCACCATTGCCACTTAATAACTAGTCATGGGACAATAAAGTAA--CGCTCCCGTTTCCTGGGTCTTTGACTCACAGCACAGGTCTCGGGGGCTGGATCTTGACTGTGAAAATTGAATTGAGACTTAGAATGTTACTAAACATTATAAGTAGCTCCTCGTTGATTTTCTGAATGTTTCCCCCGCTTTGCAACAAGAAAAGGACTCACAGAGTATCAGGGCCAGAGGAGGCTGCCTGTCTCCCACCCACTCGCACACACCAGTGCAAATACACACTTCCAAATGAGGCACCTC---GAGCCATTGTGTTGCGGCTCACGTCTGGGTTTCTCCTTGTACATGACATTTACGAAGAAAAACACTTGCAAATTAAATGTTTGATTAACATTACATCTTTTGCAGCTTAAAATGGGCGAGTGTAATTGAAAGCTGCATTAGCTGAAGAATATGAACTTTAAATGAGCTTTATCCTGGGCCTATGAATTTCCATCGTTTTATTGAATCTTTAGTGCCAGTAGACCAGGGTATTTGTACATCATA-TTCGTGAAATACTCTGAAGATTCAGCGGTCTGTACGCTTATCGGGGA--AACTGGTACCCTTTGACTATAAACCATGCATGAGGGCAATGGGCAATTCCTTTTGGA-TTTGGAGACTATTTTATCAGGACTGA----GTGAAATTTACTCTTCTTTGTATGGTTGGATACCACAGAATGGTGGCCCAGCTCCCCAGCTCTGATGTCCATGTCTACCACTTTTCTAGATACTGTGTCTACACTGGAGAATATCTCATCCTTTCCTTCCTTGCTTCT s bosTau2.chr10 5671467 856 + 70001009 CAGAGACCCCCAAATCAGATGGAGGCTGTTCTGTATTTAAAACCTAGGCAGTAAGACCACGTAAGGCTCCTCACCACTGTAATTTAATAACTAGCAATTGAACAGCAAATTGGTCCCCTCCAATTACCTGA-TCTTTGAATCACAGAGCTTGCTTTGGGGGCAAGATATTTACTATGAAAACTGAGTTGAGACA-GGAATGTTACCAAACATTATAAATAGCACTGGGTTTATTTTCCACATGCT--CCATACTCTGAAACGAGAAGGATATTCACAGAGCATCAGAATC-TAAGAGGCTGCCTCTTTCCTCTCTGCTC----ACCGCAGCACAGATACACACTGCCGAATAAGACATCCTTATGCGCAATTAGGTTGTGGATCACGTCTGAATATCTCCTTGTACATGACATTTACGGAGAAAAACACTTGCAAATTAAATGTTTGATTAACATTACATCTTTTTCTGTTGAAAATGGGTAAGCATAATTGAAAGCTGCGTTAGTCAAAGAATATGAACTTTATAGGGGCTTTATTCTGGGTCTGAGACTCTCAATATTTTTATTTTATCCTTAGAGCCAGTGGCCCAGAGTATTTATACACCATGTTTCATGAAATAATCTGAAGGTTCAGAAGTTGGCAC-CCCATCAGAGGACAATTAGCAGAGTTTGAGCAT-GATCTTGTCCAGGAGCCTTGGGTAATATATGTTGGAGTTTATGGTGTGTTTTATCAAGAGTGAGTGGGTGAAATGTA-----CTTTCTGGAGTGGGA------GGGATGGTTTTCCAGTTCCCAGATTCT-ATGTTTATATCCACTACTTATCCAGATTCTATGTCTACACCAGC-AACATC---TTCTTTCATTGTCTGCCTCT a score=4965 s mm7.chr9_random 3163091 180 + 9745104 ACTTTTCTCCCACTATTGTGGT----TTAACATGCAAGTCTATTGGTACAACCTTGAGCAT---TGTTGTCTGTCTCCATGCT--AAGCATTAGGGAGAGGCAGAA--GACATGTGGGCTCCTTGCCCTAAGGCATCTCCTGGTCTGGATAAAAAGACAAGGCTCCTCCGGTGGATACAGGGAAGCAAGCA s bosTau2.chr10 5676737 180 + 70001009 ACATGTCTTCCCCTAGTCTAGTGTTTTTAACATGCAAAGATATTAGGACTCCTTTGAGCATTTGTTCTATCTGGCTCTATGCTGAGAGCATTGTGGGAAAACATAACGGATATGAAAAATCCTTACCCTAAGGAAACTC--AGTCTTAATGAAAAGACAAGG----TCAAGT-----CAAGGAAGGGAGCA a score=25725 s mm7.chr9_random 3164733 565 + 9745104 TTCTGCAGGGCCCCCTTGGCTTGGCCCCACTCCTGTCATTGTGTGCCGTTACAAGGACCAAAG--CATTGCCCTGCACCATCTCATGGTCATAATTTGCCTTATTTTGGGA------GATCTTGGG--GGTTT---TCCCAAAGCCTCCTGCATAGT----CCCAACTGGAGAGCGATGAGGAGCAAAGGGGCTGTTGCAGGGAGGAAGTTTAAACAATTACTTGGTTCTGATTAAGAAGGGTAAT---GCCTCTCTTGGAGGAGCAGCCCTTAATGCGGAAGTAGGGGTGATGGATGCTGGCC-------CCCCGCCCACATAAATCTCACCTGTGCGTCTTTGTCGCCTCCTCACGATGTGTGTATGAGATAAATTCTCCAAATCTATTTCTGTGCCGATGCCAGCAGCCTGCTGATGGAGTAAATAAGAGTTATGGCTGCCATAATGGCATCACTTATGAGGAACTGGGGGGAAAAAAAGCAAACATGTCCACACGG-CCTTATAAATCTATTATAAATATG---------------AGAAGTTCCACTAGACAGCCCAA----CTTG-TACTCCCAGAGTCCAAATGAGTGACTGGGTGGGCAGGTGCC s bosTau2.chr10 5678492 598 + 70001009 TTCTGAGGAGCACCCTGACTTGGGCCACACACTTTTCCCTTTGTGA------AAGTACCCAGGGCCACTAGGCTGCAC-ACCTTCTGGCTACCATCTGGTCCACCATGAAGTCTGCTGTTCTCGAGCAGGCCTGTGCCCCAAA--CTCCTGGGCAGTGCAGCCCCACCTGAGAGCACGGGGGAGCC--GAGCCTGTTATAGGCAGGATGTTTAAACAATTACTTTGCTCTGATTAAGAAGGGTAATAATGGCTCTCTTTGAGGAGCGGCA-TTAATGCGAAAGTGGGGATGATGGATGCTCACCTCCCCACCCCCACCCACATAAATCTCACCTGGGTGCCTTTGTTGCTTCCTTATGATGCATGTATGAGATAAATTCTCCAAATCTATTTTTGTGCCAGTACCAGCAGCCTGCTGATGGAGTAAATAAGAATTATGGCTACCATAATGGCATCACTTATGAGGGGC---GAGGAAAAAAAGCAAACATGTCCACACAGTTCTTATAAATCTATTATAAATGTGGGCTCAAGTTTCCGAGGAAGTTCCAGCAGACTGCACAGCACCCTTGCTGTCCCTGGAGTCCCAGTGAGTGACTCAGCAGGCAGGTGCC a score=12090 s mm7.chr9_random 3166516 611 + 9745104 CCAGTTGCCTCTGGAAAGTGCGTGAGTGGTGATTCTCAGG--------------CACTGGCACAGAAAGTTCACAGGCCTGTTTCAGTAGAGC-CAACTTCCCCTTTCTGAAGGGTAAAATCAGTCCAGGATAGGAGAATGAATGCACAGGTCCCTATT-----TTAAAAAAA----GTCTCCCTCATAG--------GGCTTGCAGATGCTAAATGTCAATAGCTCCCCCAGCGATGGA-GGTCGAAGGCAGAAAGGTTGGCCCTTTCACGCAGCTAATTGCCATCTGTAAACTAGAGCTATAAATGCATCAG-CCTTCCTCCTTCCCACCTCTCCCCTCACCCAGACACTTTGTCTGGCAGAGGGGCCCCAG---------AGCTGGAACCAGCCATTGGGGCTTC----------TCTGCAGTG-GAAAGATGATAGGGAATCCTTTCCTACCCTCCTCCAA-----------CCTGCTGTGGTTTGCAATCA--CCCAGGAACTGTAGCCAAGCTAGAAATGGCTGTCTCTAAATTCCAGAGGCGGTG--GGTCCCAGCGTTTA---CTCTGAGTGTGTGTGGAT----------TGAGGTGGGGTGGCCATT-TGGGTAT-----CTGCTTGCCCCTGTTTGAGGAAATGCTTG----------TTAAGTTTCCCCTGTAG---TGTCTTCTAGGAAAAGAGGAGCC s bosTau2.chr10 5681398 702 + 70001009 CCAGCTGCATCTGGGAACCACACGGGTGACAATCCCCACAGTCATGGCTGCACTCACTTTCCCAGGAAGCCAGCAAACCTGTTAAAATGCAGCTCGACCTCCACCCCGTAAAGTATGCAAATAGCACAGGGCCAGAGAGCACATCCATGGGCCCTGAGTCCCCATTAAAAAAACATCACCTCCCGCACCACGGCACTTGGCTTGCAGATTCTAAATGTCAATAGTTCCCCCAGTGAAGGCTGGCAGAAGGTTGAAAGGTTAGTCATCATAGGAAGGTAATTGCCATTGGTAAATTGCAACTATGAACACACCATCCCTTTTTCTTTGTCGCCTCTCGCCCCACCCTGACCCTTTCCCTGGCTCAGGGGTCCCAGGAACAACACAGTTAAAACCCAGAGTTTGAACCTCAAATACTCTTTCTGTGATGAGGAAGATAAAGGGGAATAAATTCTCATCTTCCTCAAAATAAATGGATCCCAGCT-CGGTTTGCCACCAGTCCAGAGAATAACAGCCAGTCCAGAAGTCAACACTCACCAGTTCCGAAGGCAGGGATGACTCTAGC--TTAGGCCTCTGGTTTGGTGCGGCTGAGACCCACAGAAGGCGGGGCATCCTCTGTGGGTACCATGGCTGCCTCCCCC-------AGAAATGCCCACCCTGGGCCCTCAGCTCTCTTCTGCAACCCTCTCTCCTGTTACAAGAAAAGCC a score=1411 s mm7.chr9_random 3167158 65 + 9745104 AACCCCATTTCTCCCAGCTGTAGTGTGGCTGTGCCAAGTGAGTGCTCCCAACAAAGCTAATTTGA s bosTau2.chr10 5682127 65 + 70001009 agcctcggtttgcctgtctgtgaaatggggatgatgagaacctgctcctctcagggctattttga a score=11716 s mm7.chr9_random 3168127 724 + 9745104 TCCTTGAACCACTCAGAGGCAGGCACCTTTCGGTC--TCCCTTGGGGACATCATACAGT-TACGGCATGATTGGGAGCCAT-AGGTTCAGCCTTG-GTCTTCT---CTGCGGGCTCCCGGCAGCGCTACATGGGCAGGTGGAAGAGAAGTGTTCTTCCTAGGGCCTGTGGCATGAG--TCAGGTCCCTCAGCATCCTCCCAGGCTCAG-GTGGTACTGTCTACTTCAGACCTCAGTGCTGGCCTACTGGAGGGTTGTTTAAGCCAAAAAGAGGCCTCAGCCTGCAGACCC--AGTATCCCTGCCATTTGGGCAGCCTGGCTG-----------------------------TCTCTCAGGTTCACTCAGGCTCCCTGCCTGCTGTCAG-TCCTTCGCTTCTTGGCTTTCCAAACGGCATT-----------------------TGGGCCATGA--AAAGTGGCTCAAGATGGAGAGGATATGAAAATAACGGAGTGAAGAGTCTGTTCTGGACACCA---------------TGGATGGAGCAGGCAAGTCAT-GGTCAG------AAGGCAGAAGTGGGCAGAGTTGATGTGCAGACTTT---TGTGTACTCAGACCT----------TTAAATCCAACCCAGGTGGAGG--AGAGTCGGccccatcttctggatgaggcaactgaagccaagagaagacaaatagc-------------------AGAAGCAGCAGCATAGAAATGCCCTTGAACAGgctcaagctctca-ggttaggaaaaggcagagctcaaattcagacccacttcttactcttgggaatgaatgctctttcccctccaccttg s bosTau2.chr10 5682684 843 + 70001009 TCTTTGAATCTCTCAGAGAAGGGCACCTTCCAGGTGTCCCCTTGGTGATGCTGTGCAAAATCTGGGAT--TTCAGAGCCATGAAGCTCCCCCTTGAGTCCTCTAATCCCCATTCCCCTAAGGCTGCTCCAAAGGCAGGTGGGAAAACAGACACTCCTGTGGGGATTTCTGAATGGCCCTCAAGTTC-TAACCCCCCTCCTGGGACCAGCATGGCATCGTCTACTTCAGGCCATGCTGCTGCCCCTCTGGAGAGCATGTTGA-CTGAGGAGCCACATCAGCTTGCAGTCCTGGAGGATGCCCTGCAGGCGGGCAGCCTGGCTGGCACAGCGTGGAAGCTGTGCTGCCCGGATTCTTCCAGGCTCACT-GGGTCTCCTCCTTCTTGTCAGCTCCTTTTGTTCTCACCTCTTCAAACAGCTTCACTGGCAGTTTGGGTGGAGCTTGTGGGCCAGGGGTAAAGGAATCTGAAACAGAGAGGATGTGAAAGGAACCATAGAAAGTGTCTGTTCTAGATACCAGATGGTATTCTCTGCGGAGTGAAGCAGGCCATTAGTAGGTCAGCCTAGAGACGCGAGAGCCAGCACCAATTATGCCCTAATGCTGGGTGTGGGCTCAGatctagttcgagcctaaaaaccaacctgtgaggcggctaaaatcagttgcattttgcacatgaggaaaccaaggctcagaaaagataaataacttgcTTGGCTAGTTCTGgaaggaacagaggttccaagacgtttagtgactgactcaaggtcacacagctagtaaagtgcaaagctggcattcaaacccagttttgtctgttgggaa-aaagactcttttcattatgccgtg a score=8037 s mm7.chr9_random 3169836 438 + 9745104 GGCTGTGtggatgaatgg---gtgagaggatagagcatggatggatggatggatggatggatgggtagatggagagttggatggagggaag------------gatggagggatggagggaaggaGCATGGGT-CACTACTTGGCCTGTTATGTT----ACCCCTGCTTAGCCATTATCTCCCAGAATACCCACCAGTGTTCTATCAGGTGTGGATTA----CTCAGATCTCAGGCTAAGGTTTGAGCATAGGTCCCATTGACCATAGAAACAAACCATCTTCCTCCCACAGCATCTTGAAGTGAGGTCTCTGTTGCTTGATATGAACTCCC-AGCAACAGAGGGTTTCTCTCCTTTTGCAGAGGAGTTCCCATATTGCAGCCTATTC-AGGAAGCCCCTA-CAAACCTTTCTTCCACCCTAGTTCCCACAGCTGAG-----TTTTGTTTATTTCTCAAAATGCTTATTG s bosTau2.chr10 5685176 443 + 70001009 ggatgtgtggatggatggtgggtggatgactgggtgatgggtggaaggatg-atggatggatgggtagatggat-gatgggtggaaggatgCATGCATCAGTGGGTGGAGAGATGGataaaataatcattgattcagtac-----ctattgtgggtaaggctccttctcatccattaccttctgtaatgctgataactgttctataagataggtactattTTCCCAAATGTATGGGTGGGATTTGA-CAGAGGTCTGTCTGATTCTGGAAAC----CATCTTCTTTCTATAGCA-------GCAATGTCTGTAC-ACTTTGTGTAAGCTCCCCAAGGGTGGAAAATCCCTCTCCTTTCTCAGATTAGA-CCCGGATGACTGCCTCCTCTGGGAAGCGCTCATCATACTCTTCCTCCCCGCTA---CCCACTGCCTACACACCTTTTCTTTGTACC---AAGTGCCCCTTG a score=9163 s mm7.chr9_random 3170486 480 + 9745104 CACTGAATCCCAGCTTCAAA---TGTCAGCCT-CTGGCTGCTTCTGTCTCACCTCCGTCTctccccctcccccaccccctcactgtaccctctctcccaccccctcaccctacctccttacccaccccctcacccatcccctTACTTAACCCCCTTACCCCACCCCCAACATCAGAGTGGTTTATCTATAAATGTCCCAGCAT------------TTCTTTAAATCTTCCTCCATGACTGAGGCTAGTACTGGGGATTTTGCTGTCCTTGGATCCCTGGAGCTCAGTTGGCTAGAAGCTGGTCAGGATGTGTTTGTAGAGTGAATAAATGACTGGGCC--TTATAGGATCATTAGAGGTT-CCTGGAGCCTCTCCTGGCCCCTAAAACAGCCCCTGTGG--TCTGGCTTATCAGCAAGACCAGACCTGCAGCCAGCCTTTCTAGACGGA-TGCTCCCCGAGTTGCCTGTGTGAGACAACCTTTCCAGTACAGTAGTCTGGGA s bosTau2.chr10 5685704 407 + 70001009 caccatcacccagcttcaagaagtatcaacctgctgaccactcttatttcacct-------------------acctccccacg---------------------------------------actttcccaggcatcct------------------------------atcaga-----taatctgtaaatatttcagcgtatGATTACCTACTTCTGCAGAGCTTTCCTCCT--CAGGGGCTGGTATCACGGTCTTTTTCATCCTTAAATCCCCAGTGTTTAGTTGACTATAGGCTGTTCAGGGTGTGTTTGTTGAGAGGATAAGTAACTGAGTCATCTGTGGGGCCATTAGTAGTTGTCTGGTATATGTTACTGCCCCCAAATCAGCTTCTAAAGAATCCTGCTTCTCAGCAGGGCCAGATCTGCAGCCAGCACTTTTGGATGGAATGCTTGTTTGCTTGTGTGTCTGTGAGAACATTTCCGCTGCAGTGACCTGGGA a score=13645 s mm7.chr9_random 3170966 549 + 9745104 CTCTTTGGG-------------------------------------------------------------------------------------------TAGCTGATAAGGCCTTCTTCAACATGGCTTCTTTTGTGTCAACATCCCGAGGGCATAATTATGTTAGCTGTGCAAACACACTGGCTAAGAGCCGCTGGACTGCGTGTCCTCTGGCACCAGTGTGGCCT-GGCCCAGATGTCCCTCAGAAGCCCTGCCAGGATAGCAGATGGGGCCAGTTTAGAGCTTTCCTGCCCCAGGATACCCTGGACATCCCAGCTGGCCTGGCAGTGTCCCTCTGGTCTGCATCTGA-TTCAGCCACTGGGCAGCAACCCCACAGCACTGAGGCTCAGTGGCCTTACTGCTT-------AGAGACA--GAGGGACAGTTTGGCATGATCGTTGTGTTGACCACCTACTGTTTACAG-GCACCTACTG---AAATCAGAGGGAAGGGGACCCAGACCCAGCCTCAAAACTTGCCCAACCTGCAGAGACACAAAGAAAGCTCCAGAAGAAG-----TTTGGTTAAACTGCTCA-AAGCTGAGGTCTAAAGCTGCATGTCCTTCAtctcttttctttctctctttctctctctctctctctctctctctc s bosTau2.chr10 5686314 635 + 70001009 ctctttgagaccccatggactacagcctaccaggctcctccacccatgggatttcccagacaagagtactggagtggggtgccattgctttctccAAAGTTGGCTGGTGGGACCTTCTCAAATATGGTTCCTTTAGTGTCAATATCCCAGGGGCGTAATTACATTGACTGTGCAAATACA--GGTGAAGGGCAACTGGGCCACATGTTGTTTGGCATTAGTGTGGTCTCTGCCCAGACGTCCCTCAGACACCCTGCTAGGACCACAGATGGAGCTGGTTCGGGGCTCTCCTAC--------ATCCTGG-CATCCCAGCTGGCCTGGCAATTCCCAGTTCATTTGTTTCTGGTTTCAGCCCAAGAGGTG----TCCAGAGCCACTTAGCCCTGTGGCCTGGCTACTTTTCCAACAGAGGCATCGAGGGGCAG-TTGACATGATCACTGGGTTGG-CACCTAC----TACAGAACACCTACTATGTGAGACAGAGGGAGTAAGACCCAGCCTAGGCCTCAAGGAGCTCGCAATCTGTAGAG--ACAAGGAAAATTCTAGACCGAGACATTTTCAATGGAAATATCCATGAACTCACCTC---ACCTTAGTTGCCTGAAGGCCTCTGCTCTCTCTTTTTCTGTCTCTGGCTGACTTCCTGACTC a score=17576 s mm7.chr9_random 3172945 1504 + 9745104 TCTCTGTGTATGCTTGGGCTTAAAACAGTAAGGACAGTGAAGCACGTGGACCCACAGGAAAAACTGAAGACATCTTGCCTGCTCCATATGTCCCAGGGTCAGCCTACCTCTTGACAAACAGGAATAAGTGTCCTGCTCCTCTCAAAGCCTTGCTCTCAGTCCCACGTAGCCCTTCCTAGAGTCTGGTTTGTTTG--CATGGACATACTGACACCCCAAACA--------------------------------------------------AAACAGGAACAAA--GGTACAATCTCAGATGGAACCTCCACTAACCTAAAAGGACCCCATTATGAAGCCCGTAGGAAGTGGCcc----tccgtgtggacagaaccctgtgctagggtgtccagtgtccagctaaagtcctgctaggtttcagtgctggttttccctttggccaggtaccttgatcggtacacaactaacacagccatccatggtgtctctgTGTCCTGGAACTTAAGTCTAGAA---GAGATTGCAGGTTTGGAAATG----ATCAGAGACGTGACATAAATGGTCCAAAAGAA-------TAGAATGTTCTAGGAAGACCTTGACCCCTCCTCTCTACCTGCCAGCTTCAGACTC-------GGAGCTGCTGCCTCTG--CCCACAGAATCAGCCTCTGGCCTGGACTCTTTTCCCCACTCCCACTACAGAGCAACC------CCCTGCTTATAGGGCTTGGAGGGCCCCACCTGGAGCAC-GAGGGCACACTCCTCTGTGAAGTACACTTCCTGCTG-----AATTTGCATTAATGAGTGTCATTAAGAGATAATTAGTGTGTATGGAGAGGAAAGGGACTGAATGCATCAGAGAAACATCTGGAATGGTTT-GGAGTTCTGATGAAGAGCCACTTTGAAGTGTTTTGTTTTCTGCAGTCACCG----CCCCCCCCCCCCACACACACACACTGTGTGCCCCAATGGCCCCAGAT----------------TCCAGCCCCAA-----TGACCCATTTGTAGCCTGTACCTCTCCTAGCAAACCCTTCCCGGCTG-CCCCAGAGACTCTCTGGATTGCTGAATCAC--CAGCTTTGCCATTT----TATTCACCTCCTGCATGCC---------------------TTAGCCTTGCTGACTTTCAGCCATTCCCCTCACTCCCCCCACCCCCACCCAGAT--------------CCCCTGTTATTCTTTGGAGAGAGCCACTGACCCT-----GCCTCCACCTGGCCCAGCCCAGAGGTCTCTGCAGGTGCCTCAGCC-TGCCCGT---AATAGCACCAGGTTTTGGGGGCGATGCTGGCTTCCTGGATGCTGTAAT--------------------------------------------------------------TTCACAAAGAA--------------------------------CAAG----GTTAGGATTACTTCCCCA--CTGTAGAATGGGAAAAG-----CTAGCCCGCCTTTCATCTGTGAGAAGAGCAATGAGGACAG--------------------AGGCATGTCACAG------------ACACAGGAGGTCCTTTCTCCTTCTTGGTCCCTGGATCAGGAGACATTCACTGGGCTAGGGGAGGAGAGAC-----CAGGAAACA-----------------------CTCCCCTGCTCCTGAAG---------CTGCCA-----------------TCCCTGTGGTCCCTTCCTGGAGACACTTGTCCTTGTTAACCTTCTCCCTGTGGGACAAATACCTCTCCC---CATTCTCATCTTCTCCAGGGA s bosTau2.chr10 5688855 1804 + 70001009 tctccGTGT-----TTAGCTTAGACAAAGAGAATTGGGGAAGTAGGGAAATACTCAAGAAAAGTATAAGCCACACTGTCTCCTCCAGTTTTCTGAAAGCTGGCTTTTAATTTGTGAAAT-GGAATGACAAACCCACCCATCTCAGAG--TTGCTTTC--TTCCATGCAGTCATGCCTGGATTCTTGCTTTTATGTTCATGCatttcctgatgcagcaaatatgtactaaggacatactctgtgctcagtgctgtgccaggaacaggaattcagccagaaacaaacaggcacagcctcaggcagggacactacct-cctaaatggaccccttgtggaaattgccaaaaggtggcccatcctctgagtggacacagc--------------tccagtggcaagttgagagcaggctgtattttagccc--atctgccctctggccaggcattttgaacagtgcacaactcatacaactgtacatggtgttcctgctccctggagcttcagtctagcactagaggtttgagacatggaagtgggtgattatagcAGTGATATGAGTGCTGCAAAAGAGACGTGAGTAAGATGCTCTAGGAGG-CCTTCAACTTCCCTCCCCATCTGCCAACTTCAGCCTCCCCGTTTGGAGCTGCACTCTCTGTGCCCGCAAATTCAGACCTCAGC-TAGACCTCTACTGCCACCCTCACGGGAGAGTGCCTGCCTCACCTTGCTGGGGAGGGGGGTAGGGTCCTAGCTGGAGGACTGGGAGCACATTT-GCTGTGAAATATACTTCCCAATGTACCTAATTTACATTAATGTATGCCATTAAAAGGTAATTATTGTAT---GAGAAAGAAGCCAGGGAA-ACATCAGTGAAACATCTGGAATTGTTTTAGAGGCTTGATGGAGAGGCCGGCTGAGGGGCCAGACTTTCTGCAGCCACCATGGACCCCCCTGCTGCTGCTCCCCAGAAAGCCCTCTCAAATTGCTCCAGGTCACACTCACCTCTCCCTCCCCCTCCAAATTGTTAAGCCATCCAT-GTTGGTATTTAACCACACA--------CTGGCTGGCATTAGGAACTGTTTGCA--GCTGGGTTACATTATCTCTCCCAGTTGGACTGTCAGCCCTTCTAATGCCACATTTGGCTTTCTCATCCAGTAAGCCTCGGTGAACATTA---AAACCCAGCAGCTCTAGCGCCTTAACTGAAACATGGGAGGGTTTGCCGACAGGTAGAGACTGGAGAGAGC---TGGCTCTCGCTCGCGTCCACCTGTCGCAGCTCAGAACCCTCAGCCGATGGCTCAGCCCTGCCCCCTCGGGAGGTACCAGGCTTTGGGA-CAGTGGCGGCTTCCTAGACATTGTGGCCTAGTGGAGAGAGCGGGGACGGGGGCCGGTGGGGGTTGGGGTTGAAATCATCGCGACGCGGGTTTACACTGAAACCCCGGGGTGGAGGCActtgggccatctatgcaagctcagtggggacccctttcccagtctgtaaaatggagatcgtgccacctgcatcctgttcaagagggtgaactgaaatgctgaaagtgaaatatccagctcaggcggggcttggcacaTTCGAAAGCCATCACACACGTGCATCTCTCCCCTCCT----CCCTGAGTCGGGAGAC------TGGGTTTGCAGATTAGAGTTACATACAGAAAATGGTGAAGTCCCCTCTCTAGCCATCATTCCCTGCTC-TGAGGAAAGTATCCCCACCACCTCTCAGAGCACAGGGTCTCTGGGATCTTACTCCTGGGGTGTTTCTCCT-GCTGGTCTCATCACCATGGAATGCAAGCCTCTCCTGTTCTCTCTCACCTGCTCCAAGGA a score=12920 s mm7.chr9_random 3174509 543 + 9745104 CTCCTTAC-TTGCGTAGAGTGGACC-AGTCATCATTCAGTTTGGGCTCCGTAGGCCTGAGATGGGCTGGGCCATAGCCTGGCAACTTGGCCTCTCCAACAAGCTCCCAGGAGTGATCTGTTCACGTCAGTGCTGCTGCTAGCCCGCCGGGGTGGAGGGCTACTGCCCCTGCCTTG----CTAGCAGGGGCATGTGCCTTAGTTGGGTTGTTCAGCCC-ACAGTTTTCAAAGAGTTAAAGCCAGCCTGCCTGGCTC-------TCCTGCTCTTTCCTTTCTG-----GATCCAGGTGCCACTCGGGACACGTGCCAGCGAGACCCAGGTGATTAGATTAGTAAGCTTGGCTC-TTTCCCTATCTTCTGTTCTGAGAAACAGCATCCGATACAAGGGCAATCTCAGTACTTGGAGGCAGACCAGGC---CAGCTTGGCATCTGCTCCGCATGTG---TGACTTTGAGCTGTTCAGAGCT-ATAACTGATGCAGaggtgatctggcctgcctgggcctcggt-ttccccatctgtgaaatagagacagtgat--CACCCTGATACATCTCACACAT s bosTau2.chr10 5690735 536 + 70001009 CTCATTACCTTGTATAAAATGGACCCATTTATCATTCACttctgatttaatagatctgaggtgga---ggcca--------aaattctgcatttctaatgagcttgtggggg-gatcc--ccaagctggtgctgctgtc-------------tgaggaccac-------actttgagaaccaGCAGGAGGGTGTGCTGGGAGTAAGCTGTTAAACCTTGCTGGTGGTGAAGGGTTAAACCAAGCCTTCCTTGCTCCTTCCGTTTCTTTTTTTTCCTTCCTGCTTTGGCTTTAGGTGCTGTGCAGTACA-GTGCCAGGGAGACCCAGGTGATGGGTTTAGCAAG-TTGGCTCAGTCCCCCATCATCTGCTCTGGGAAACTgcgtcatatggtggaaagaacacag-gcttggaggcagagcctgcattcagcctggtgtctgttccataatagccatgaccttgagctgctggtagtttgtaattgaagccgtggtgacctagctcatctgggcatcagtgtttctcatctgtgtaatggagagaataatgttctcctggcaTATCTCCCACAT a score=14325 s mm7.chr9_random 3175131 2040 + 9745104 TGGAAGAGGAGGAAAGGGCAGGAGATACAGGAA----AATGGCACAAAGGTGGACTGGCTGAGTCCCAGCAAGGACTTGGGAGGTCATTTGATTTCACTGTGTTTGTTTATTATCTATATAttgtagtactggggagcaaactgagccttgtgcctgctaggtaagtgctctaccactgagctatgccccagccTAAACatcctcccattatacaaagagggaaactaaggctcaga----------------------gGCTGAGAAGCA-----------------CCATTTGCTGTATGCGTGTCTCCACTC------AGAGCTCTCAGCTCCTCCACCTCCCTGCCACCTCATCGTTAATAAAACGCCAGGTGTGTGCCCCAGCGTCTCATCCCTGACCTCTCTCAGGAAGCTCCCATTATGAATCTTATTAATTACTCCTCCCTCTGCTCCCCTGATTTTTGAGCTTGTCTCTTTTCCTGCCTCTCTCAGCCAAGACTGAAATAATAAAAAAGTTTTATTAGGCCTAAAACTGCTTTGCTAAGTGCCACCATTAGCTGATAATAAAGCTGGTTCTCTGAGTGTTGCAACC---TGCCTTTACAGTTTCCTGTTAGTC--------------------TGTGGCCCTCAGGATGGAAGGTTGGGGCACTGAGGACAGGACCCCTCCATCCTTATCCCCAAACCTGGCCTGGTAGGGAGAAGGTGGCTTCGGGAAAGGGTCCTCAGGCTGGACCATTGGAAG--GCCACCAGGGGACAGGGGACAGCAAGCCCCTGCCTCAGAGCACACCTTTCCTTGATGAGGAAGATGG------------------TTAGGGAAACTCTAGTCTAGTGGGGAAATT---------------GAGGGCTCCCAGACTAATGGGAGAGACCTCAGAGGATATAGAAATTTTCTAGGCtgtgtgtgtgcatatatactagtgtgtgtgtgtgtatgcaggtgcacatgtgACTAAATGCTtgtagaaaatagaggtgaatatctggtgacttcctcagttactctgtcttatttttgagatagggttgaacctggagctcgtgattcagttagcctgactgtccagggatcatcctatctctgcctttccagctctggggttatagacacataccaccatccctggctttttaatgtggctcctggggtatcgaacag--aggtcgtcataattatgtgatgaccttttggccaactgagcTGTAGCCTCTGTAGTGTCACTGCTCTGGAACACTGTAAGTGACAGTGTAAGGGACTGTCTGAGGTCCTGGTCTGAGGTTA-tcattttatccttacatcagcccagtaacaaagtggctgtccttatccctgtgtggcagctggggacacaggtacggaaaggtggtgtcacct-------------cctgaagttgtcaGTGGTGCTCTGATAGGGAAACTGATGGGTAACTTTGGCAGATAGTAGATTAATT-----------TATAGAAGGTGATCAATAAACTGGTTTGCTGA--------------AAGGACAAGA----AATACC--------TTGGATTTGGTG---GGTA----CAGGGAGG----------------AGGACTCAACTGGA---------------GGGACTAT--CCCCACTAACTTCCTGGCCCCGTGCAGGCCTGA-------CAAGAACCTGGAGCCAC--CTTCCCAGCCAACTGCACACAACTTAATAGACCATGAAATGTCGTTACCAACGTGGGGTTCAACAGAATAGCTTAGGTTATTGCTGGCAACAGTAGCAGACTGCCCAGGCAGATGGTCC------CTTCATTTCCCTTGTCCCTGGGGCACAGGAG--------GATGCTCAGGGAGACAGGGAAGAGGAGAAGGCAGGAGGACAGAAAGCAAGGAGGTACTGGAGGGAA----GACAGGGAGATTGATGG---------GGCTCATCTAACATGCCTGGTCTGGAAACCCTGACCCTGTGAAGGGATGAACAAGCACTTGGGAGGCAACAGCGTGCATCACGCTGCACTCAGCTTGTGAGGAAGTGGGGTCACTCCCCAGACTTCACTTACTGAATCACATCTCTCTCCAACTTCTTCC-----------CTGGGGCTTGTCTTTAGATA-GGAGATGTGGACTTAGAAGA-------TGAAGTGATCCA------AGA----ACCCATGTTT--GTGTTTCTGGATgtgtctgtcactaagcatgatgacctgagtttgatccctgg s bosTau2.chr10 5691341 1858 + 70001009 TGGAAGAAGAAGATGGAGT-----------GAATTTTAACAACACAAAGATACAAGGCCATAGCCACAG-AAGGTCTTGTGGGGGTA--------------------------------------------GGGGAGTCA----------GTCCCT--------------------------------------TAAACATCtccccattttacagaggagaaaactgaggctcagacacaagaaagtgacacccccatggccaaacagcaaaaccagaagagaccagctttcccctgaatctggttcTCTCCTCCATCCCAGAGTATTAACTTTCTACCTCTTCCTTTTACCCCGTCTTTGAAGAAAAACCAGGTGCATGCCTCAATCTATCATCCTTGTCC-CTATTAGGAAGATGCCAGTTTTAATTGTGGTGTTTACTCCAGTCTTTTCCTTCCCTGGTTCTGGGCTTGTCTCCTTTTCTGCCTCTCTAAGCCAAGACTGAGACAATAAAAAAGTTTTATTACATATAAAATTGCTCTGGTAAGTGCTGCCATTAAATGATAATAAAAAGAAAATTTTGAGTGGTGCAACCAGTTGTTTTTACC-TTTCCTGCAAATTGCTCAAAACTCCAGGTTTGGTGTGGTCACGAGGATGTCAGGT--------TGAGGACATCCCCCCAGGCCTCTGATGCCCACCCCTTCC------AGGAAGGCCTGAACGCGGGGAGGGGCCCCTCAGTCACA-CACTGAAGGCAGCAGTCAGGCTGGTGAGGACTTT--GTTTCTACCCTGGGG---ACCTTGATCAGCTAAGTGAGATAAGTTTGCTTCTTCTCCACCTTTGAGAAAATCTAGTCTCATAAGGGAATTAGGGCCCTGTCTTCAGAGAGCTCCCAGGATGGTGGGAGAGACCCGGAGGGAACTGGGGCATTTACCCACTGT--------------------------------------------------------------------------------TCTGGTGG-------------------------------------------GGGAGCTCTTTCCTGAGTT-------------TGAGACCCTCCCCTCCC--CCTCCCCAGT----------CAGTCACA----------------------------------GGGTGGAGAATTTTCAGGCTatcatagctat-------cctt-----caa--------------------------------ggagcgctata--------tgccaggcactgtttgtggtccttacacgtgagaacttactttgacttcgcaacaactctatgagatctggaccgttcttatccttg---------aggaaaaggaggcatggagaggttacaccacctgccccaaggcagccacaaagaaagcagcaaagcccagatgtgaaaactgacagATGgc--------------gcttcattcatcccctgactatagtagatgcttaataaa--ggcttactgagccactgaCACAGCAGGCATGAGATAGTAACACTAAACGCTATAGGATTTGGTGCCTGGCAGAGTCAAGGAAGCCTTCCTAGGGCATGTGGGTTTTGATCGGAGGGCTGGACGCCCCTGGGACTATCGCTCCGTCACCTGCCTAGTGTGACCTAGGCCTGAGGAGTAGCAAGAACTTGGAACTGCTGTTTGCAGGCTTTCTGCACACAGGTGAACAGA-----------------CAGCGTGTTGTTTTA-ACACCAGCTTCCGTTATTGCTGGAGG-----------TGCTCAGGGAGGGGGTCCAGGTAGCCTTGGCTTCTGTACTTCTG-----CAGGAAGTCCCCTTGACTCCTGGGGAGGCAAGAAAGAGGG------AGAAGGATGAAATGCAGGAAGGAATTAGAGAGGAAGATGAAGGGGAAATTGATGAAAGCTTGTTAACCCATTCAATGTGCCTGGC-------------ACATGTGGATGAATGAGTGATGATTTGAAACTAGATGGTGGTAACCAAGCTGGATCCAGTTGGTACTGAAGTCCGCCCACTCC----ACCT---TGAGTGAATC-CGTTTCCCTCCCACCATTCCCTCCTCTGCCTTTTAGGGCTTTCCTTTAGGTAGGGAGACGTGGACTTCTAAGAGTTCAATGGGAATGGTCCACATTACAgacgtcccccatggtccagtggctacgaatccgcctgccagt--gca-ggggatatgggttcaatccctgg a score=15533 s mm7.chr9_random 3178898 1076 + 9745104 TGCACTGCACACAACACatttttcacatttacaggattggagactggagtgtggggaaggtgagcaattgcctgagatcacacgcctaattgatggcggaccatgggttggagtcaaggtcagctgtgtgccca-gctcagcttctccaccgctgccctctgACT--CTGAGCTTTGAGGTCATCTACGGA--GACTCTTTACCATACTTCACTGCCTGTCAGCTCCTGGGTAAGGGCAGCACTTCCTTTGGAT--GGCGATA-----CCTCCCCCACACTCACCTCTAATGTG---GCAGAATGTTCTGGGCAAAGGAAGAACCCAGCTTGGCCTCAGCGGGGATAAGGGTGGTGACCAGGAGA---TGATGCTGGTTA-CTCTCCACCCAGGCCCCACT----AAAGCA-TGGGCATACTTGTTCAAGACCATATCTCATAGAGGGAAGCTGGACTGGACAGGAAAGGTCCCAGCTGTGCCCAAACAGGCAGAGCACCCCATTGAAGGACACTAACTAGCAAGAGTCACAAATTAGTTCAAAGGGACCAAGAATAAAGGTGAAGAAAGCAAAGGTCGGTGCACTGCAATAAGACTGGGGATCCATGAAGACACT-ATAAACTGCCATCACTTTGA-GAT-TGGTCCTGATGCTACAGGAATGCAGTCAGCCAGGGCATCCAGCCTTCCT-CCGTTAGGACGAGGTGTCTGCTGTTCCCACATCCAGCTGCTCATCCCACTGGTTTGGATTTGGAGACAGGCCTG-CTGGTACAAGCA---TCTCAGTCCTAC-AAACCAGCATGTGAGTC-TGTTGGCCTTCTATTGGATTTTC-------AGAAATCAGAGCCTAGGTCAGGCCCTTGGGCCCAGCCCTGGAATTAGCCAGGCATGTGATGCTCATTAATAGTAATGAATATCTCTCCTGGAAGTCCTTGAGCAGTGTGG-GGTGTATGGGGCTTCTGTGCTAAGAATTGAACAT-TTTCCTCAAGAAGCAT------------GGGGCACTGAGG---------GGGTCAGTCATGGATGAGGAAAATGGGGCTATAATGTCTACCTAGGGCGTGTAAAGGAGGTGTGGTCTATGGT----------------------ATGTGTCATGTGTGATGTTTGTGTAGTTT s bosTau2.chr10 5693415 1053 + 70001009 tgtactattagtaccctattttacacacat------ttggaagctgaggcccagagaagataagtagctgcccaggatcacgagcttagtgggtggcagcatgcggattggagtccaggctgacttcatgccaaagctcagtttcttgacc-ctgcttccttattgcctttcCATGGTGGTTGTATCTGGATGGTCTCTCCTCCCACCCCCACC-CCAATAAATTCCTGGAT----GCAGTGCCTCTCTTGGAATAGCCCATAGTTTTCATTCTGCCCAC-CACCTCTGGTCTGCTGATGGAATGGT--------GGGTAGAACCCCAGCTGGT----GATTGGATTGCAGCATTTACCAGAAGGGTCTCATGTTTGCTAACCCAGTGCCCAGGCCCCTCCCTACAAGGCAGTAGCCGTGCGTGTTCTATGCTATGTCCCACGGAGGAAAACCAGCCTGGGCATCAGGGCTCTTTTCTGT-CCCAAA----------------------------------------------------TCGAAGGGACCTTTACT-----TGGATGGAGCACAGG---ATGCATCG--------------------GAAGATGCTCGTAAAACATCCTAACTTTGAAGATGTGGTCCTGATGCTTCAGAAAGGTGGTCAGAAGGGAGACTCAGCTGCCCCACCACTTGGATGC--CGTCCACTGTTCTCACACCAGGCTCATCAGCCCAGTGATTTGGATTTGGGAACAGGATGGGCAAATGCAAGAGGGCCCTAAATCCCACTAACCCAGCACAGAAGCCCTCTTAACTCTCCATTTATTTTTCCCTGAATGGAAATCAGGCCCCAGGTCAGATCCTCAAACCAAGCCTGGGAATTAATTAGGCATGTAATGCTCGTTAGCAGTAATGAACACTCCTTGCTGAAGCCCTTGTGCGTCTTGGTGGGGGACGTGGCCTCTGCGGCAAGAATGAAGCATCTTTCCCTGAGCAGGATCCTGACAAAACAGAAACCCCAAAGCCTTCCTGAGGGAtgtacatgcatgcgtgca-tgtgtgtgtgacgtgtgagtggtgtgtgtaatgcatgtgtgATCTGAGGCTTGCATGCAGTATGTGTGGGACGTGTATCATGTGTATTGATGGCATGGTAT a score=22430 s mm7.chr9_random 3180179 892 + 9745104 TGCAGTCCCTCCTATGGCATGTCCCTAGTATGTGGATCACAAATGGCACCAAGTATGCATGGGAAGGAATCTG------TCTGTGAGTGTG-----------CTTAGCCCGAAGGACTTTGTCACTGTCAGA-GCAGTAGATT-CTAGGCATCCCCATGACACCGGGGAGAATTATGGCCTCGCTTAGCCTTACCATAACATTGGTTGCAGGGAGGACAGGTGAAAAATGTCCCTGGGAATAGAGAAAAGGAATTTGACTAGCTCAGCAGAGACTGAGCTGGGCTGGTGTGAT-ATTGAAGAGTATCTGATTAAAACAGAGACCCTCC--------------AAGGTCCTGTGTAGGGAAAGGG-CAGTTTGCCCTGGAAAGATCCAGAA-AGAAGAGACATGGGCCTCAGAAGTAGTAGAA----------GTTAGTGGAGACCGAATGAAGAAGCAGACCAGGGGGCAGAAAGGGAGGCATGGG-GCTCTCAGGACAGTCAGCCTGTGGGAGTTGGGATGTGGGATGCAGGTGACTCAGGGCCTACCAAGAACACTTCTTGTCACCTCTG--CCTGGACTCCCCAGGAAAAAGATATCCCCACCCTCTACCCGACAACTCGTCAGCCACGGACTCAGCATTC------------------CTGTCTGCTTTTCCTATAAAGTGACCGTgttccaactaggacacttctgagactaaaggggactattaataattatgcctggacagcaagtacaaactgggactgtcAAGTCTGGGCATGTAGAATG-----TCCCAAGGCTTGGGGGGCAGAGGGCTAGGGATAGAAGTGACAGCCTT----TCTGTGTCCAGGCTCAGCCTG--------GCAGACGAAACCTTG----------ACCTTATGACCATGG----TCTCTGCAACCTTGCCTGGCCC-------------------------------AGCTTCTAGGACACTCAGAGAAGCATAACTTCCTGCAAATATACCCAGAG s bosTau2.chr10 5694709 974 + 70001009 TGCAATTTTGCATATGGCGC-TATGTAACACGTGTATCACAGGTG-TGTGGTGTGGGGACATAAAAAACCCCGCCTAAATCTGTGAGCGTGTGCTCAGGTATCTGAGCCTGCAAGACTCTGTCGCTGTCAGAAGCAATAGATTGCCGAGAATTCCCATGACACGGGGCAGAATTATGATCCCGCTTAGCACTGAGATAACATTGGTTGGAGAAAGGACAGATGAAAAATGTCCCCAGGAACAGAG-AAAGAAATTCAACTGGCTCAGCAGAGGATGAACTGGGGCCGTGGAGTCAGGGAAGAATATCCAATTAAAACTGAAAATCTCTGTTAGCGGGAGGGAGAGGTCCAGAGAAGGGAAAGGGACAGCTCATCCTAGAAGAATTCAGGACAAAAGAGACACAGTTACTGGAAGCACCAGGAGGGCATCAGTGTTGGTGGAGAGATGCAGAAAGGGGATGTGAGAGGGGAG-GATGAAGGCATGGGTGCCCCCCA--------------------TGAAGTGGAGGAGGCA----------GGACCACCTAAAACATTTGCTGACATCTCTGGTTCTGGACTCCCCAGAAGAAAGACACC----CTTCCTGCC---CCATTCATCAGTCATGGAAACAACTTTTCCTCTCCTTTCCTTCTTGCTGTTTGTGCTTTGGGTAATGTGACCATgtcccagctgggacactttggaga-taaaaagagctattaataattatgccaggacagcagatgaaaactgggactgtc----tcgagcaCATGAGGTGTGGTTTCTCAAAGCCTAGAGGAGAGAAGGGGTGGGTGTGGAGAGAAAGGTTTCTCATTCATTATCAGGCTCAGTCTGTCTCCTAAGCAGG-AAGACCTCGTGCACCATCAGCCCCTTGAACTTGAACATCCTCTAAACATTTCTCTGGCCCGTTCCCCATAGGTACACTGCATGGTAGCAAGGACTTCTGGACGACTCAGAAAAATCTAACCATCCACAAATATACCCCGAA a score=36870 s mm7.chr9_random 3181117 875 + 9745104 GTCTACCCTTTTCTAAAGCTCAGCTCTACCCACAATCCCACTGTGTGCTCTGACCACAGGAAATCTTG-CCAGGATTTTCTAGATAGAGACAGGACCGGATCCAAGTTCCCCAGATAAAACTCTTCTTCCCACCC----------CCACA-----------------CCTTGTATTTGTCTAACATACATTTATTATTTGGCT-TCTTAACTCCTGCATTGTGTGAGTGGCATTACACCAATATTACAGGAAAAAGGCTTAAAAATACAAATAAATCACCTTGGGTTCAACCACCCTGGAAAGATAATTAATTTCATTTTTTGCAAAGTCCCTTCTGATTCTTGTCAGCATGCCTATGTTT---TCATTCCATTGttataatgtgttcataattttgcattctgggtctttcatttcacatttttatcatatgcattttccatgaaacattgttttcatcaatattttaaatggctgcataatagtttgttgagttcatataccataatttacttaaacaattcccctacggttgaacatttcagttgctccccatttggggctattacagataatgttgcagcaaacatcaccgtgcatatggaatgctggctactcctgtgaatgg-ctccattggacaggatgtcatgatggggattactgggtcaaagtaaacgagggtttttataaccc----------tggtcatactgctttccaaaacaattgtcccaattttcaccaccatcagtaatg-gtgtaccagctccagtgtgccattgtca-aagtgactctta----ttgtttttcctctcaattgctaatttaggaggtgtgaaatgggaccactatgatgatttaatttacatttattggtctcctagcaaggacagatgtttttttatgttATAAAAGGCTCTC s bosTau2.chr10 5695996 900 + 70001009 GGCCACACTTCTCTAAAGCTTAGCCTCATCCAGGATGCCACTGTTCATTTGGACCACAGGAAATCTGGCCCAAGAT-------ACAGGGATAAAGTTGGAT---------CCAGAGACCACCCCCACTCCCACCCCAAAAGGTCACCACACCCCTCCATCTCTCTCCCCTCACATTCATTTGACCAACATTTACCATTTGTCTATTTAAACTTTTGTATTGTGAAACTGACATTGTAACAATCTTACAGGAAATA--TTTAAAATTAAACATAAATCACCTCTAGTCTTCTCACATTAACACAATAATTAATTTCA--TTTTGCCTGGTCCCTTCTGATCCTTGTCAGCATGCCTACATTTTTATTATTATGTAGttataatgcgcatagaattttacattctgagt-ttttacttcaca-tcttatcataagcacttctccatttacatagttttcataaatattttaaatggctgcataatcgtttgttcagtttatataccataatttactt-aacaattcctctattgttgaacattcaggttgtcttccatttgggactattatagataatgttgcaatgaatatcttcatgcatatataacacttgttattcttttgagtaatttcctttggatactgtattaggactggaattactgggtcaaagtgaataagcatttttataacccttgatctgtattgccatattgctttccaaaatgatcgttccaattttcaacattatcagtaatgtgtgtaccacttttaacataacattgtcattggtgcatgttagcatttttttttcctctaaattgctaatttaggaagcataaaataggacctctgtgttgcatgaatttgcatttattggctttctagccagggtgcaca-ttttctgtgttAcaagagactttc a score=2348 s mm7.chr9_random 3184235 163 + 9745104 ATTGAGGCTTGGAGAGTTTTAGGTTTT-AGCTGGT------------GGTCATTTAGGCTGGTCAGAGCTGACC---------------ACATCA---TGTTCCCCTTGTCTTCAGAGTAAGGA-AGAAGACAT--TGAGCCCCTTTGCACATAAGCTTTTCCCTATCCTAGGCTTCTGGTCTCTTCTTAACTCTGC s bosTau2.chr10 5699972 191 + 70001009 ATTGAGGCTTGGATATTTTTAAGTTTTTAGCTCACTTAAGCATATAAGGTCACTTAAGCATATAAAAGCTAGACTTGAACCCAGGTCTAACATTACAGTGCTACCCTGGTTCTGGGGGTAAAAATGGGAGACCTAATGGATCCCCTTGCA-GCAAGCCCCTCCCAGT--TGTGCTTT--GTC-CGTCCCAGCCCTGC a score=22547 s mm7.chr9_random 3184462 582 + 9745104 GGGTGTAGGCATGGGACCAGCCCCTCCTGAAATCATGGGGCGGGGAGAGAGAACATGCACGCATACATGTTGGGGGTGCACGCTCCA---GTTTTGGGCAGCAACCCAAGTTTTACATCTCCTTGCTGGAAAAGAGAGTTCAATTTGGCTGCAGTACAAACTCCCCAGTCACTAAACTGCCATCTTCATTTAGTTAACGCTCTTTCTGGGCAGACCTGGCTGGGATTCATCTTCATTATCCAGTGA-GGGGCTCACTCCAGGCCGGGCTTTGATCTCAGAGCAGCAGAAAATTGCCTCTTGCAGATGATTTCCCCTGAAGACCATTAGCAGGGCTGGTAGGAGGCTGAGTGCCAGGGAGGAGCTACGGACAGTCCACTACCAACACAGGCCCCCTCTCCATCCTTACCAGTGCCCAAGCTGCCTCTCTCCA---------GCCCCCACTTACCTCTTGCCT---TTAGCTAAGCTAGACAGGGCTGAAATCCTAACATCTTTTTCCCCTGGCCACACAG----CCCTC-----------------AATAACTAGTACTCTTAAAACAGTTTACAAAGTCCT-TCCACATTTTAACTTTACAAACTCCAAAGCCACGGCCg s bosTau2.chr10 5700196 585 + 70001009 GGGTGGCTGCCAGCGGCCAG--------GGATTGAGGGGGAGCGGGGAGATGA-ATGTGTGCACATGTGC-GGGCGTGTGTGTTCCCCCTTTCTTGGGCACCAGCCCAAGTTTTGCATCTACATGCTGGAAGAGAGAGATCAATTTGGCCCTGATACAAACTCCACAGTCACTGAACTGCCATCTTCATTTAGTTAACGTTCTTTCTGGGCAGACCTGGCTGGGATTCATCTTCATTATTCAGTGAGGGGGCTTACTCTGGGCCAGGCTTTGATCTCGGAGCTGCAGAAAATCACCTCTTACAGATGATTTCCCCTGCAGGCCATTAGCATGG--GGT-GGGGGCTGAATTACAGGGAGGGGCCTGCCACCGTCC-CTACCACAACCGCCCCCCGC--------------------AACGGCCCCACTCCACCAAGATAGGCACCCAGTTAACCTCTGGCTCACTTAGCTAAGCCGAGCGGGAGGGAAATCCTGGTTACTTCCTCTCTCTGCTCCCCAGAGGACCCCCTATCGAGTCCCAGTGCTGATAACTGAC-CCCACAAAGCACTTTACAAAGCCTTCTTCACATTCGATGTTcgcaagctccaaagccagaccca a score=36457 s mm7.chr9_random 3185555 1127 + 9745104 CTTAAGCCTTCTACAGCATCCTACGGTAGGC-------TCATGTCTGGCAGGTTCAGGACCGCAGGGCTG------ACTACAGGCTCATAATTATGGAGATAGCCAGGAAATGCTTC------GGGCTGCC--TTGCTCCTCCAAGCAG-----------CAGGG---------------------CGGTGAGCAGAGACT----TGCCTGGAGCCACTGTGCTGGTTGA---------CATAGGTTAGCTTGTGCACCAGAACTTTACACAGCTCTGGGGTGGCAAGATTTCCCAAGAGACCGTTAGTTAGCTGGTCCCTAA--CTGCTCAGAGCTCTTTTAGAACCATAACAGCTTCACCCTAAGCCCAAAGGTTTTCCCCTCTAGCC----------------------CCCCAAACCCTACGTTCCCACCCCGGC---------GTCTCAGCGATGA------CAATCCTC----------------------ACCCCTTTCC--AAGTCTGCAG-------ACCACCCCCAACAGGC-CAGCCTC-TTCTTGGCTGTGTGCCCAGCCTCAGGCCTTTCT-CCATAGGCCATGCCCCAAGCTGTTTTTAATCCCTTGTGATTGGCACTCTCTCGCCACTCGGGGTAAGGACATTTGGTCTCTGCAACTGGCACTTTGCCGCTATTATCTGCCCATGGCAACAGGGTCTGTAATCCAGCCCATT--------CATCTTTTCTTCCTCTGCATACACTCCTGGGCAGTCGGACCCCACTTGGATTTGTGTGAACTGTGCAGCCAGCAAAGACAGAAGAGCCTTTTCACAGCT-GGGCTGCGGGGTCTTTGAGAAGCTTATCCGTTCAGAAAGGCCAGCTCGGAAGGATGCAGAAACTGCTTCATGAACCCAAACAAACGCCTTGTGTTCCCCCAGCATGGCTTCTTGGCCGACTTCCTTGCACCTGACCACCCATTAATCTGCCTTTTAACTGGATCTGCATGTGTCCCGGGCACATGGTTACTGTCTCTAGCCCCAGCTGGGCCACCTCCAAACCGGGTCACCCTGCAGGGCCGTGTTTAATGG--TTCAGAGATACAGCCCTGCTTCTTTCAGAGAGGATCCAGCCGCAGGCCCTGAGTTGACAGGCAGTCTACAAAAGCCAGGGATTCTGAG---AAAATAGCTGCTGCTGGA---TATCCAGAGGATAACCAAAGGACAGGGCTTCAATGTAGGATTTTT----AGCCTGGAGTCTGTGCATAGTAGGACATAAATACCTT s bosTau2.chr10 5701221 1265 + 70001009 CCTGAGGCTTCTAGAGACTTCGTCgtgaagttgctcagtcgtgtccgactctttgcgaccccatggactgtagcctaccagggtcctctgtctgtgggattttccaggcaatagtactggagtggattgccatttccttctccaagggatcttcccaacccagggatcgaacctgggtctcccgcatcgtagacagacgctttactgtctAGAGAC-TTGTGGCTCTTAAAAATCCTTCCAGCATTTGGCTTGTGCTCCAGAAGGGCAGACAATGCTGGGTCAGCAAGATTC----AGAG-----------TCTAGTTCCCAAGTCTGCTTGCAGCCCCCCAGGAATAAT-CTAGCCCCACCCTGAGCCCACTCGTCCTTTCTGCCGGCCCTCTGCTTGCTTTTGCTGATGACCTCCATCCCCTCGGTCCCAACCCTTTCTTGCTCTAGTCTCAGCCCCTGCCTCCTCCACCCTCAGTGGGCCAAGGGCAGCCAGGTACCCCTCCCCCAAGGCCTCCAGACTGGGCACTGCCCCCACCATCCTCAGCTCCATTCTTGACTGCTAGCCCAGTTTCAGGCCTTTCTCCCAGGGGCTGCACTCCAGGCTGGTTTTAATCCCCTGTGATTGGCACTTTCTGACAGTGCAGGGTCAGGTCACTTGGTCTGAGAAACTGGCGCTTGGCCGCTATTATCCGCCCACTGCGGCAGGGTCTGTAATCCAGCCCATTGATTCTGCCATTGTTTGTTCCT---TACACACTCTCCAGCACTCCGACCTCACTTGGATTTCTGCAAACTCTGCCGCCAGCAAAGACAGAGAAGGCTTTTTGCCACTGGGGCTGC-GAGTCTTTGGGAGGCTTCTGCATTCAGGAAGGCCAGCTAGGAAAGATTCATACAGTGCCTTACAGATCCAAACAGATGCCTTGTGTT-CCCCAGCGTGCCGCCTTGGCTGGCTTCCTCGCACCTGACCACCCATTAGTCTGCCTTTTAACTGTGTCTGCATGTGGCCTGGGCACTTGGTTACTTTCTCCAGTCCCAGCTGGGCCTCAGACAAACTGGGTCACCCTGCAGGGCCACGTCTAATGGCTCTCATGGATACAGCCCTGCTTTTTCCAGGCAGGCTTCAGCCCCAGGCCCCGAGCTGATGGGCAGTTTACTGCAACCTGAAACACAGGGCAAGAAGCAGCTGCCCCTGGAGTCTGTCCAGAGGATGATGAAAAAATAGGATCTCCATCTGGGCTTTTCTTTGAGCCCAGGGGCCCTAGAAATTCAAACAGAAATTCTTT a score=36675 s mm7.chr9_random 3187481 2719 + 9745104 TGTCCCTGATCCCAGACCTTATCAGAGCC----------CCCATCCACCTTGCCAGGCCAGACTTAGCTTCCTTCTTTGCCTCACACCTTAATCCCTTGAGGGCTGAAGCTCTCTCACTCAGTCTGTCCCTCCCTGGGCCAGCC----ATTCCCCCATAGGGCCCCTCACTCACCAACACTGCAAGGCATCTTCTAGCCCCAGAGAGACATTTTT--CTCTCTTGCCAGAAGCTACTTTAAAATGTGCAGACTCTTGCAAAACACCAGAAACAGCTAAGAGGGAGCAGAAAGCAGTCATCTCTCTGCTTCTTCCCCCAGCTGTCTAA--------CCTGTG--------CTCACTCACCTGGGTCTT--CTCCATACCTTGCCAGGGAGCATAGAAGGCCAGAGGTATTGGGATGAATAGAAGGCACCAGCACCCTCAGAATCTCCTGTAGAAG--CCATCTAGGCTGGAGCTCCTGGATGAATGGCTGCCTGACTTCTTTCTCTTCTAGAGATGCAGGCTCTGGGCTTCCCACAGACTCTGGGGATGGAAGGGCACTTGTGGACCATCCTGAC-AGTACTCTTTTACTTTAGACTTGGTCTTGAAGGCAGAACTATTGCTATTATACTTGTTT--------ATGT--ATGAATGGTTCCTATTCCCCAGAATCTTGTA-GATTCAGGAC----------------TAGATGTCTAAATGTCTGAAGCAGAATGGAGACTCatataaaagatggtagatttgggtctgagactctctttccaatacaccttcacctcataggcagggaaagtgagtctcagagaagcatgtgacctgcccaaggccTTCTGCACCTAAGCATACCCTCTCA--GTACTTCTGT----------------GGCTGGTTGATGG----GGTGCAGAGCAGCTGCTGAAG--TAGACATGGGAGA----CCACAGTGTTGTCTCTATGGGGCCATATACTAGTTCCTTGATAGACAATGGACACTTCTCAGGATACCCGTGTTCTCATGTCCACCCAGCTGAGGAACCAACTCAACTGTCTCTGAAATGAGTTTTTGGTTCTTTTCTAGTCATGGAGATTGAACCCTAGGGTCTCTAGTCCTAGCCCAGTGATTTCTGAGATGCCTCAATCCAACGGGAATTCC-----CTTCATTTCTGCTGGTCCAGTGGCCCA---------GACATTTCCCTGAGGACC---GAGGCCTTCATTAATGAG-TGGAAAGATATGCTTC-----CCTGGCAGCAAGCAGGACTTTA-----GCAAGTAGCTGAAGTTTAACCTGAGAT---CTAGGCAGAAG-GAGATTGCAGTGGATATCAGATCTAGTCTTGCACACTGGGGTACAGATGATAGCTATGTGGGTCTCTACCTGACTCAACTTCCCTTTGATGT-----GTTTGTTTGTTTCCTTGCTTGCttcttttgaaataa----ggtctcacgtagcttaggctagcctcaaacacattgtatagctagctgaggatcaactttaacttctacctccctatctctgcttcccatgtgctaagattacaggtatgta-----ccaccatggccaatgttatggatgcataggatggatccctgagattgatacatgttaggcaagcatcctaccacatgagctctagccctagccccTGTTTCCCTTAGTGTTTGCTTCATTCTCAAGCATTCTCTTCCCAAGTGGAGCATCAGTTCACACCCTCATGGACTGAGAACAGCCTCTTACCCGCTTGTTCTGTAAGGGATGGGT-cccatctctgaaccattcgttgtg-cgagggaaaggc-tgttctgattgtctaggcatgcctcaagtacc-----------accatggcaacatcagcttcaggaatcccacctccaatgatctgagagtgggggcagggtgatgccATTGGGTTGACAGAACACCTGAGTGTTTATGTCCCCTCTCCAGTGTAGTCC-------------------------GGGGACATGGCCGAATTTGAAACAGGGTGGGGGGCTATATAGGATAAGAGAAGAAAGGGTAGTGCTAGAAATGCTTAGTAAGGTTGGATCCAGAGCAGAT-------------GGATCAGAGATTCCA------------------------TCCTCAAGAAAGACAGGAACTGATATCCCTACAGTT-TCTATACCTGTTATGTCAGTACTTATCCTTGTAAGAATGTCCT--------------------------------------------------------------CAACCCCgggctggtgaga-------------------------------------tgacccagtgggcaaagacacttgctaccaaaccggatgacccgagttcaatccctaCACAGTGGAAAAA------GAGAGAGGACTCATGCAACTTGACCTTTACATGCATGCCATGGTACCCGCAAGCCCCCTATACACAAAATAAGTAAGTGGGAGAAAACATTTTAAAACCTAGGCTAAGGAAAAGACACCGTCAGGATTTG--AATTCTGTTCTCCATCCTAAGTTTTCTGAGTTGTGTCATTCTGGA-ACAATGCCATGACCCCTGACAAGCTGGTCTG-TGAGTGCTAGAAGGCCAAAGAAGCCCGCCAGACTCTACAACTTCTCAGAG--CTGCCTGGGTTGCTGGAACAAGGGCCTGCACAGCCCCAGGGGAAAGGAGGACGAAATTGGCTGGAGGCCAGCGCTGGCCACAGGAGGGGG-CAGTGTCTTGCCAATGAAATATTCATGATGGTTATTGAATCAAGCTTTATTGGAATAAAAACACACTTGCTGAATACATTTATTTCCTCTGGTTCCTTTCAACCCCTTTCCCTCCCTGAGTGATTTGATTTGGGACTACAGAAAAAAAAAATTCTTTTTCCCTGAGCAAATTGGACTTAGGTCAGCAAAAGAAAGATGTTGTGTCAGGATTGG-----AGCAAGGCAAGAGTCCTCTGGGGG s bosTau2.chr10 5704183 2716 + 70001009 TATCCCTGATCTAGAACCTTGAAGCAGCCGCCAGACCTGCCCGCCCACCT-GCCTGGCTAGCACTAGCCTCCTGATCTGCCCCACACCCTCCACCCCCA---GCTGACCCCCTCCCAT---GCTTGACCCTCTCCGTGCCTTCCCGTGACTTCCCC---TGGCCCC------ACTCCAGCTTCCAGGCACCCTTGAATCT-GGAGAGGCATTTTTTTCTCTCTGGGCAGAAACTACTTTGAAATTTGCAAACTCTTGCAAA-TGGCAGAAATAGCAAGCAGACAGGCGCTCCCACAAGTGCCTGTGCTCCCTCCCTCACTTCTCCCAATCTTCCTCCTGAGTTTTCACACCCACTTGCCTGGGTCTTGGTTCCACACTTTGCCAAGCCAACTTGAGAAGCTGGGGCATCTGG-------GAAACTCCTCTGATGCCCAGAATCTCCTGGAGAAAACCCATCAGGCCTGCAAAACCAGGC------ACTGGTTGCTATCCCACTCTTCTTGAGACACAGCCTCTTTCCTTCTCACAGATTCTCAGGCCACAGAAGAGCCTGCAGACCACCCTGGCCAGCTCTCCTCTACTTCAGATTTG-CCTTGAGAACAGCATTACTGATTTTTTTTTTTTTTTTTGCTTTATTTTAATGTGTGTCTTCTACTCGCAAAGAGATTGTGTGGTTAAAGACAGAGACCTTCTTTACTTTTATTTCCCCAAGTCTAAA-CATAATAAagactcata--aatgatattagagctggattggagttcatcttgttcaagcctcctcatctccctgacagtgagactgaggctcagagaggcatctgacctgccgaaggCTTCCTGGTCCTGCGCCCACCCTTTCACGACACCTTTGTTATTGACTGACTAATTGATTGATTGATGACACCATTGAGGAACACCAGTAGCAGGCTAGAAAGGGGGGAGGTAACCCCGAGTTGTCCCTACAGGGCCCTACACCAGTTTCCTGAGGAATGATGGGAATTTCTCAG------------------------------AGGAGCCAGTACCACTGCCTCTGAC------------TGCACCTTAATTCTTAAAGAT--ATCTCCAGGGG------------------------TAAGGGGACTGGGGCCAGCCAGCCTTTCAGCACCACCATTTCTTCTGATCTGATGTCCCACTTTCCCCAAACATTTTCCTGGGGATGTAGAAGGCTTTAATTAGTGAAATGAAAAGACACACTTCAGATCCCAGgcatcaatcaatactttttcactgtaagtgacagaaacccggcctaagatggcttaggcagaaaagaggatttattgcttcttggaaccag----------------aaagaacaggggtagatgttgctcta---ggcacaactgcatcatgatagccataatctgtctccaccttggctgttttcctttgtgttgacttcattctcaagtgtt-----ctcttcccaaaggaatgacagagatggc----aaccaac----------------------------------------agttccaggtctgcagtctcccagcat----aacatctccaatggggagaaagcatccct--------------ttactcaatcattccagc---taagtcccag------------------------------------------------------aatggagttgca---------------------------------------ttggcctgatagggtcacatgcctatcccaggaccaatcactgtgaccagagaatggagtattctgattggccaggcttgggtcatgtgccctcctgctgggaccagggtggtatcagccccactcattccatgttt-----cctgagcctgggg--aggaaggTACCTTTGAACTGTGAAAACAGTCGCCCACT---ATCCTTTTTCCAGTTTCATTCCTCCCAACCCCGCTGGATTTGCTTAGTGAAAATGTCCTGGCTTAGTTTAGGATGGGTGG--ATAAGGATTTAGAGGAGAG-GGACAATG-TGGAAGTGGCTTAAAAGCATGAATCCAGAAGGGAGTAAGTTGTTGGGGAGATAAAAGCTTCTAGATAACTCATCTCTTGGCCCTCAATCCCCAGAAAGGATAATAACTGATGAATATAAACTTATTCATATCAATTATATGTTTATTGATCCTCATTAAAATGTCATAAGATAGGGAgaagaaactgaggctcagagaatgaagtaacttgaccaaggtcaccacccagcaattcagtgttaatgcgagtgtttgaacccgactctgtctCAagggcttccctggtggctcagatggtaaagaatccacctgcaatgccgga-gacctgggtttgctccctgggt--tgggaagaccccctggaggagggcatg-gcaaccc-actccagtattcttgcc-tgg--------agaaccccatggacagaggagcctggcggg----------ctacagtccatggggtcacaaagaatcggacacgactgggcaactaaGCACTCCATCTCAATCTCTAGGCATTGCCCTGTTCTTAATACCAGGCCAGCTCCCCTGAGGAGCTGCTCTGGTGATGGCTGAAAGGCAGAGGTGGACAACTG----TTTCAGCTACTCCGAGTGCTGCCCAGGGTGCTGGATTAGGGGCGTGTACTGCCCCAGGGGCG-GAAGGGCAAACTTGGCTGGAGACCAGTGTAGACTGCAGGAGGGGGACAGCCTCTTGCAAATGAAATATTCATGGTGGTTATTAAATCAAGTTTTATTGGAATAAAAACACACTTGCTGAATACATTTATTTCCCCTGGTTCCTTTCAACCCCCTTCTTTCCCTGAGTGATTTGATTTGGGGGC-CAGGAAAGA-----TTTTTTTCCTCAAGTAAATTAGACTTAGGTCAGCAGAAT-AAGATGCCACGTCAGGATTGGCGGTTGGCAAGAGAGGAACCCACTGGGGG a score=6949 s mm7.chr9_random 3190995 907 + 9745104 gctcactgacATTTTACTATTTTCCTCCCTCCTGTCAGCTCTCCAG-ATCATGTGCTCCATCCCTATAGACCTTCATCTCTTGCCATTGTATATCCATCCCAGCCTCCCTCA---------CTCTAGGGGTC--TCTTTTGGTTCCAGTATCTCTTGAGCTCTATGTAACTTC----TTGACTATCTGTAAGGGTCTCTTTTTCTCCTTA--ACCTTACATTCAGCACACCTACCACAGGAacacacaca--------tacacacgt--acacacacaTGCAAAGTCAGCATCCTTCACAGTCTTATTGCACACACGTGTCCGTTCTGATTTCTCCCACAAGCGTGGAATCCCTGTGCTCCAGCTTAATCATTTCC-----------CACTGTCTT------------GCTGCTGGCTGACTCAGCACA---AACCAGGAGCTTCTGTCTTCACTCTCAGTACTTAG-CAAGCACATACATAGTA------------CTGTACCCTCGCTACCAAAACCATAGGGTAGCTCCAAGGCCAACCCAGTCTAGCCTGCCTGTGGGCTCCCTTCTTGTTCCACAGG-AGGAGACACAGGTGAGAGGCAGGAGGA-GGATCCCAGACACTGGGCTGCTTCTCCTGCAG----------------CGTACAACTCCAGTGCCAGCTGGTAC-TGCCACCATACTTGGTCA-TACCATG---AGTGACCCTGAGCTGTGCTGGGAACATGTCATAACTATGAACCTAGGCAAATTAGGAACCTGAGGGGAACAG---------------GCATGTAACCTTACTC-----------------------TGT-------CAGGCCTGTCCTA---GTGCTTAGGTCCCTGAAACCCATGGG--CTCCTCAGGTCTTATAG-TCTAGTAGGATAGGGGCTATACTGGAGTGCACCTCCTCAGAGTAACTTCTACTGGTACCCCCA---TCACCCATGCC-TATACTCACCTG----------ACTTTTCTG-----GCTTCAGCCCCA------------TCACCTCCTTGCCTGGG------GAAATCTAAGA s bosTau2.chr10 5707419 1031 + 70001009 GCTGGTTATCCTTTCAACGCTTCTCTTCTTCACCTTAACTCTCCTGTGTCTCTTCTTCCATCTCCACTGATCTCCATTCCTCTTTATTGGAGTTCT----CAGCCCCTCTCCAGAGACTGTCTCTGCAAATCCTTCTCTTGATGTCAGTATCTTTTGGGCTCTGTGTGTCTGCCAAGTCGACTGTCTGT----------TTGCCTCCCTATCACCTCATATTTAGAACTGTT-CCACGGTcacacacacagagtctcacacacaccttaacacactctgacacaatca-caccct---cagtttcac-aaacacacatgcaca-----------cacaGAGGCACTGATTCTCT-----CGTGCCTTATCACTCACACTCACAGTGTCACTGTCGCACACATGTTCGGGCTGCTGGCTGACTCAACAGACAGAGCCAGGGTCCTCTGTCTCCACTCCATGGCCTGGGGCAGGCAT---CAGGGGATTCTCTGCTACTCTGCACCCACTCCACCCACACCATAGGGTGGCTCTGGGGCTGGCCCAGCC------ACCCG-AAACCACCCTGTCCCTCTACAGGGAGGGGTCAGAGGTGAGAGTTGAGAGAACAGAGCTCAAGCA-GGTATCACCTGTCCTACAGGGACACCATGGGATGAAGTGGAAGGCCCCTCCCGACTGGGCCGTGCCACC-TGCATGGTCAACACCCTGCCCAGT--CACTGGGATGAGATGCGGGCTTCATGTGACCCTGAGA-TAGACTG-TTGAGCACCCAAGGGAGACAGATGTTCCTGAGAGCAGAGTCTGGCTTTGCTCACTGTCCGTCCCTGACCATCGCCTGTGAGCCCCCAGATTTGTCCTGCAGGCACCCGTGCTCCTGAGGCCTGGGGGACCTACTCGGATCTGAAAGGCCCTGCTGGGCGGGCCCCGTGTGTGGGTCTGGATCCTTGGGATGCCTTTTTCT--TATCCCTGGTCTCGTCCAGGCCACATACTTCCCGGTGCACCTCGTGCCCTTCTGCTCACATTCCGGCCTCAACTGTTTCCTATTTAATCCCTCTCCTGAGATATTTGAAAGCCAGGA a score=3508 s mm7.chr9_random 3191902 360 + 9745104 GTGAGAC-------------------------TCTGCA--------------AGGCA-CTTCTT-------------CCAAAG-----------TCCTCTGCCATCTGG--CTCCTCTT------TCCTTCTGGGGACTTGTCTGACCACGTCTGCCTC--AGGATCCAAGTCT------------------------TCCTA-----TGCTCTGTCAGCTCCTCGGCCCATCAGATCCCTCCACCCTGCCCTC-----------ATGTGCCC-----------------------CTCCACCA------GGCCTGAAGGGTGGC-AATCCAAAC--GAGCCACTTTTATACTAGG-TAAAGATGTCAGCAAATGCCCTCTGGACT-CAGCTCCCTG-------TGGCACATGGAACCTGTGGATATGAAAGAGAAGGGTGTGACCCTCAAGCAGTAGGGTGCCCACCAGAACCC-----CCTGTGGAGATGAGAAGGGCACCACTGGGGAGGGGGCACG s bosTau2.chr10 5708580 519 + 70001009 gtgagaccttggttcccccaccagggggtgaatctgcattccctgccttggaaggcagattcttaaccgctggaccaccaaggaagtcccCGCCTCTTTTCCTGCCAGGAACCCCTCTTGGATCTTGTCTCTGAGGGCCTGTCTCACCTC-TCTTTCTCCTGGGCTTTAAGTCTGGTCACACCCTGGGTCAGGCTCTGTCTTAAACTCTGCTCTGTAGACTGGCCGACAAGTTAGCTTCTTGCCCCTCTCCCCCTTTCCAAGCACATTTGCCCAACACTCTCTTTGGGACACCTTTCTGCACCAACCTGGGCCTTAGAGGGTAGTGAATCCAGCCCAGAGTCATTTCTGTGCCGGGACAAAGACTAACAAAAATGCCCTCTGGGCTACAGCTCCCTGACCCCTCCAACAGGTGGAGCTGGTGGGTACCCAGGAGAAGGGTGTGATCCTCGGGCAGCAAAGAGGAAGCCAGCACCTGGGGGTCAGGGGAAGGCAGAAGAGGCCCTCTGGGAAGAAAACATG a score=44040 s mm7.chr9_random 3192511 1453 + 9745104 CTAAGTGTCTGTTCCC-CTTCTGGAAAATGGCCACAGTGCTAAAGAATGGGG-----ACTGT-CTTGGCCCTGGAAAGAGTCTTTGTGAATGCCAGACACTCTTGTCACCATCAT---CCGTAGTATCCCAAGGACCCATGGGCATTCACAGTGCCC----------CTCAGTCTGCCTGT---GCCTGCCTGGCA--------------------------------GACATGC--CAGTCTGCCTGCATCCAACAACT--ATTGCAGAACTCACTG-CCCAGCT-----GCTCCAGCCCCAGCCCTCCCCTGCTGCTTATGATAATT-GATCTCTCTCCCTCCCGCGGCTCTGC---------AGCTTTTCTTGGCTTAACTCAGAAA----TGAAAGAAAAATAAATATATAAGCCCTGTCCAGCATCCCTGTAATTAGGAGGTTTGGCTCGGTCCTGAGTCAGATGACCACCA-TGAACTGGAGAAAGCTGCAGAATCTTCAGTGTCTGGGTACTGGACGGGGGCGGGGGGTTGGGGGGAGAGGTTAGTCTCTGCATGGGCTCAGGCCACCTTTGGGACAACTTCCTGTCTCCATTGGCAACCTTTCCCTACAACACAGGGAGCAGATAATTAAACCAGCGTAATGAAGACTCATTCACTGCTAATTCCTGTAGTGTTGAAAGGAATTTACATTCCTGTGCAAAGAGAGAAAGGAATTAAAACATTGAAAATAAATAAAGTCTTAAATACTGGACTagagcttgctaggtgctagacaccattcaaagcccttt--aaataataactcatttaaacctGTCGTTTTGAAGGTGATGTGTAGCTGTCAGCTTGGATTTGTAGCTGGAAGCTTTGTAAAAGAAGGCAGTTTGGATCAGACACAA-TTGTCAATGTTGCAGGTTGTCAAGGGCGTTGCTAAGAGAAGTCACTGTGTTTAAATGCTGTTTAACTCCTTGTTGCCGGGAATGTGAGAAACTGGATGGATGGATGGAAAGAAGatttttaaatttttattttattatttttttaaGAGAAGAAAATGAGAATTGTTCTGCTTCCTTGAAAAAGTTCAGGGCTGTCATTGTGCTCTCAGATCAAaaaaacaaaagcaaaaatacaaaaaaaaaaaccaaaaaaccaaaaacccaaaaaaccaaaacaCCTTTGA-CGTGTAAATGAGACAGTCTTCTGC-CCCTAGTGGCATTATACCTACATTGCAGGGAAAGTACTCAAAGGTTGAGATTTATTCTGCCAACA-ATGGgatagacagacagacagacagacag--acacacaCGAAACTGA-CCAAATTGATTATTAAAAGAGGAAAGAACATGT-GGGTGAGAGCATGGGAGCCAGCACGTGATTGGCACGGATTGCCTATATACTTGTGGCCATGAAAGCTGAGTGAAAGGGTGTGGCT----AA------TTAGGTAGAAGG--ACCTTCTTATAAATAAGGAGAAATTCTTTGCCCTGTTCTACTCCATGATTTGTAGCCTGGAAATAAAGGACAgggtccg s bosTau2.chr10 5709479 1435 + 70001009 ctgagtgtcagtttcctcttctggaaaatggacacagtaatacccatttaggggttAAATGTGTTTGGCCCAGAGGAG---CTCAGCTCATGGCAGGTGCTGCTGTAGCCATCATGAGCAGCAGAATCCTGAGGACCTGTGAGCACCGACAATTCCCTGAGGTGGCACCGAGGCCTCCTGCCAGGTCTACCTGGCATCCAGGTCTATCCTACCATCTCTGCCAGGCCTGACATGCGGCTGTCTGTTGGCAGATGACAGCTCCATTGTGGTAGTGATGGGCCTGGCTTGTGAGTCCTCCCCTCCTCATGCCCCTGCTGCTTATGATAATTTAATTGATCAAGCTGCACCGGCTGTGCCTCTCCAGAAGCTCTTCTTGGCTTAACTCTGAAAAGattaaaaaaaaaaaaaaaaaatCAACCCTGCCCAACATCTCTGTAATTAGGAGTCTGGACTCAGCCCTGAGTCCGGTGACTGTGAGTGAACCAGAGGGAGCTGCAGAGCTTCCCCTGT--------TGGGAGGTGTCAGAGGA----GGAAAGAAACCAGCTCCAGCCCCAGC-CAGGCCACCTTTGGGACAACTTCCTGTCTCCATAGGCATCCCTTTCCCCCTTCACAGGAAGCGGCTAAATAAACCAGAGTAATGAAGCCTCATTCATTGCTAATTCCTGCAGTGATGAAATGAATTCACTTTCCTATGCAAAGGAAAAAAAGAATTTAAAATGTGAAAATAaataaaacctcaaatagttgtatagtgcttactatgtgtcagacactcttttaagccttttacaaataataactcatttaaacttGTCATTTTGAAGGTGATATTCGGCTGTCAGCTTGGATTTGTAGCTGGAAGCTTTGTAAAGGCAGGCAGTTTGGATCAGAGACAGTTTGTCAATGTTGCAGGCTATCAAGGGCGTTGCTAAGAGGACGCACTGTATTTAAATTTTGTTTAACTCCTTGCTTCCAGAAA----AAAAGTTGGAT--ATG---GGAAAGGAGATTTTT---TTTAAATT--------------AAAGAATAGAGTGACAAATTTTTTGTTTTTATTAGAAAAGCCAGGGTTGTGATTATGATTTCAGAT------------------------------------------------------------AAAATTCTTTTAACCATGTAAATAAGATAGCCTGCTACTCTCTGGTGGCAGCATGTAAGTATTGCAGGAAAAGTGCTCAAGAG--GAGGTTT-CTGTGCAAGCCTGCGTGATGGGAGGTGGGGGGGGTGTGTAGCAGCAAAAACTCAACTGATCCTAATTGATCGTTGAAA---TAAAAAGCATGGAGGGTGAGGGTG-GAGAGATGATAAGTGA--AACA-AGATTGGCCATATTCTAATGATTACTGAAACTAAG-AAAAAGGTGTGTTTTTTCAAGTAGTTTTAAATAGAAGGAAAATGTTTTATAAATA---CTAAATTCTTTACCCTATCCCATTCTATAA--TGAGGCCCAGAAATATTGA--AGGGTCTG a score=2253 s mm7.chr9_random 3194085 260 + 9745104 tcttctgacctccacgggtaccttcacacatgtgcacatacatatacaggtgcacaaataaaaataCATCTTTTTTTATTAAATGTAGAAGAAAATTTCAATCTCCCGCCAGCTATCCCAAATGGCCATGTTCTAAGGACTCTTCCAGT-TCTTTCCCTCTAACT-----------TGTAGCATCATGGGGAAATAAATATAATCTGTTGGTG-GCAGACCTTCAGGG-TAGCAGAAAGGTA-GACCTTCCCAGCATCCTCTTGGGCTGCAGCCA s bosTau2.chr10 5710914 192 + 70001009 TCTCCTGTTCTCA------------------------------ATACAG-------------------------------------------------TGATCTGC--CCAGTTATCCCAAGTGGGTAGGTTCTGATGAATCTGCCAGTGGCTTTGCCTGCATCTCCACCTACCTCCACAGCAGCACAGGGAA--GAAGATGACCCCTGGATGAGCAGAGATTCAGGGCCAGGGGAAAGGCGTGGCCTTCCCATCCTCCTCCTAGGCTGTAGCCC a score=8382 s mm7.chr9_random 3194675 744 + 9745104 gggtggaacccagggcttcatgcatgctaggcaagaactctacccactgggtcacggccacaacccTGGTATTAGCA-TTGTATGCCCCTCTTCTCCATTGTCATATGGCTTCCTTGATCCAGAG-----ACTAATTCTCATCCTTACTTTTCCATACTCTGTCACAGAAACTAATCAGTCGCTCAGAATGAATGACTGAAGTAATGATTAAATCATGCATGCAACAagagatttcgtgatttctccagatgatacagcaggaagtggcagagtctgaatttgggtcttg---gtGGCACCCCTTTCATGACTGC-------------CCACTTTG----CTCAGCTGATAAAAGTTTTG-----------ATTGGTTGATATGGCTATCA-GAGGTAATAAATCTGAAAGGGTTCTGGCTAGTGCGTGGACAAGAGGACTCTGGGTATAAACTCTTCTACAT-GCTCCTGGGTCCTCAGGATCAATGTGT---GTGATGTTCTAAAGCTG--------------------Tctgaatgtg-tagtctcttcctacctctatgttctctctgttccttcaccttgacaacttgaaattgtctgtgttcgcaacttttatgccatagaaagcaatcagtgctgcaaaacaagg-------------------------AGAGCTGGTTGTTGATCATAGACTAG-ACCCCCATTGACTAGGTTCCAGTTGGTGACA-----------GGGGTGTCAGACTTCAT--------------------------------------TACCCCCTCCCACCCACTTGC-----TGCAGACTGATTCAGGTACTATCAAGCTGACAGGAAGTCCATGATGATGCCACAAGAGAA s bosTau2.chr10 5711293 824 + 70001009 gggtaaaccccttacccccatagatg--aggaaa-------------tggctcCCTATCCCAA----attattatcatttttacgactctcttctccaccagattgtgagtttcttgacccaggggctgtgctgtttttcatctttatttctccat--ctggtaacagtaaagagtcaat-----------aattattgaatgaatgaTTAATT-----ATTCAA-AGAAGATTATATGATTTACCCAGGTAAT----CATACAGTGATAGAATCTGGGTTCAGATCTAGCCCAGAGCACCTTTTGCAGCACCACAGCTTCTCAAATGACACTCAGACGCCTCAGTTAATAAGACATTTGTAACTTCTAAACTTGTATCACATGACCACTGCAAAGTGACTAATCCAAAACGCTGCTGGCTGGTGGGAG----AGGGGACAACATGTGTAGACCCCTTCCCTTGGCTTCCTGGTCCACA-AATGACTGTGTGTagtggtgttctggagttggctcacattggctcaccagagctgattgtgctgatctcttcccaactctgtct----tctattacttcatataggtag-----------ccatggtaggagtacttactccatggtaattggcaaatactgcatatcaaggttttggtggggtttttttcctctgcagacctgattgttaagcctttacaagcgcccccactgACTAGGTTATAGCTAGTAAGAAGCTCTGGAGTGAGGTGTGCATCTCCATGTGCTTATTTCCTGTGGTTGGGAGGCAGGGGACTAGTACACCTCATGGTTCACAGCTGCACATGTGCAGATTGCTACACAT-CTGTGATGCTGTCAGGAAGTCCATGAAGTTGAAAGAAGAGAA a score=4771 s mm7.chr9_random 3195644 373 + 9745104 CAACCAATATCTCCAACCTTGAGCC-TCTTTGTCCCTGTATTCTTCCT------------------AAA--GCACTCTCCTCATCCAT-----TCTCTGGACTGTGTCAGGTGCAAGGT----CTCTTCTATTTATTG------------CCTGTGCCTCTTCACAGCATTACAGCAACACTCTATGCATCCCACACAGTTCCCACAGTGGTGAGCCCCCTCCCAAGTCCTCTGTTCTTTTCCTTCTGTCAAGGAAACCAATTG--GCTTTGGAGTAGGCAGCCCAGGC----CTCTTCGTCCTTTCGT---------------------------------------------------------TGTCCTTGGGTGAGTTCTGAACATTGGGTTAGA-------TACAAGGTGC-CAGCACAGAAAAGGCTCCT-GGGCAGTGGAGCTC----TGAGTCCTGGGGACTTGGGCTTACAAGAGCTTAGCA s bosTau2.chr10 5713116 485 + 70001009 caacctatttctccagctctgacccctctttgccccttcattGTCCCTTTGAATATCCAAATATCCAAATTGAACTGTTCTTGTTCACCATACTTTCCTGTCTTTGTGGGGTTCAACATGTCACTCTTCTATTTATTGACTGGCTTTCTCTCTGGACCCTCTCACAGCATCATTATAGGACCATGTACATCCTACACAATGTTCATTACTTTTGCTCACCCTCTGATTTCTTTCCTTTTTCTCTCCTGCAAAGGCATCCTGGtgaagcaatgaagt------cccagattcaattctttgccccttattcactgtgggaatgtggcaagttacttgatctctctgagtgctggttcttcatacatctgttcttcagcgtgttgtggagattaaattagatcgtgtgtgtaaggttcacagcacagAGAAGACACTTAGGACATGAGGGCTCATCTGGATCCCCTAGGACTCAGGATTACTGGGACATGACA a score=31591 s mm7.chr9_random 3196074 1026 + 9745104 TCAAGGCCTCTGGAGAACAGGGAGGCAAACACAGAGCTGGGGAGACAGGG--AGGCCAGGATCAAGCAGAGCTGTCTCACCAAGGTCGTAC--------ACACTTCTATTGTGAGTCTATTTGGTGATC--AACCCCATGGTGGGGAACAGGTACAGAATGAGACTTAA-----TCCTACCCTCTTGTTTCCTTCTG-------CTCAGCTCCCTGTGGGTGA-AACAGTCATAGAGGTCa--gatttgaggtctagccccagctaagatgtaactccatggactatctcaggcaagatcctactgctccccagcccctggtttcttca-----agaatgaagagtctgaagaggcaactct-tgaagcttttacttctgaATGGACAGCAGGACGGGAGCAGATCACCCCCTG-GGATAGAACCGCAGAATTCTGAATGCATCTTAAACAAAGTCC---CTTG------------------------TGCTTTCTGCAGAGACCCCCGTACCAGGGCTGAGCTGTGGCCAGTCACCTTCCT--------------------------------------------GCTTCGTTGGAGACATTAAATGAGGCCTGGGATACCCTCCTCAGGGCTCCCAGGGGCAGCATTACATCTGGTGGCCTTAGTGGCTGTGGCTGCTGAg---tggaggggtggaggagcagagaggtggagaggtggagggtggagggtggagggCAGGTACTTATGGACCCAGTTTAGGACTCTCAGCAGCAGCAAGATGACAGCTGCATCTGCCCTCCGTGTGTTTTCTTATTTGTTCCCAGCAGGAAATCGATGGTGTCAGAAACCGTGGGATAACTCTACAGCCCCAATCGATAGACCCTGATTAATTCAGCCATGGCTGTTGGGTAAATTTGCTGCATCATAATTAGAATTATTAATTAAAAATAGGAAATCAATTGACACAAATTAGGCAGAGGAGGAGTCAGCTGGGCTGCTTTGACATTGTTGGGGTAGATGTTTGAGGACCTCTTATGTCTGGTTCCAACTGGGGGGTCTGGCCCTCATGTGACCCCTGGGTTCCCCTCATACTGAGAGGACAGCCTCCAGGGCCTACTACTCACTGGGAA s bosTau2.chr10 5717383 1068 + 70001009 TTAAGGCCCAGGAAGATGACAGGAGCCAAGACAGAACCAAGATGAAAGGGTGAGATCAAGAGCAGACAGGCCTGATTCCTCTGGGCTACACTGGATATCAGACTTCC---------CTGCCTGAAGATATGGGCCCCATGATAGAGGACAGAGACA---TGAGACAAAAGCTGTCCCTGCCCTCCAGTCTCAGCTGGGCACACTTTCCACTCCACGTgagtgggaatggacatgaagacaaaggacttgatttccagccccagctgtgcagtgactcagtgggccatcttgggcaagaccctgcctctccatggggctcggtttcttcatttacaaattgacagggcaggagaggaggatttgcaaggttctttctaCAAAAGGGACAGTGAGATGGACATTAATATCTACCTACTGATACAGCAGCAGAATTCTACATGGATTCTAAAGAAAACCCAGACCTGCTGGCTGGCAGATGCCACGTTGACTCTTTCTTACAGATCCCTCTGTGCCAGGGCAGC-CCATAATCAGTCACCTTCCTTGAGGAAGCTAACAATAGTTAGGATGCCACACCCCCGGCCCAGAACCCCTCTGGAG-CAGGAACTAGGAC----GCCACCCTGCCCAGAACTCCTCGGGGAAGC------TCTGTTG--CCTGGTGGCCGTGGCAGCTGAGCCTTGCAGGGGGGAGGGAGGAAAGATA--------------------ATTGAGCAGCAGGTGCTTCTGGGCCTGGTTTAGGGC-----ACAACAG--AGATGACAGC-GCATCTGCCCTACGTGTGTTTTCTTATTTGCTCCCAGCAGGAAATCAATGATGTCAGAAACCGAGGGATAACTCTGCAGCCCCAATCAATAGACCCTGATTAATTCAGTCATGGCCGTTGGGTAAATTTGCTGCATCATAATTAGAATTATTAATTAAAAATAGGAAATCAATTGACACAAATTAAGCAAAGTAGGAATCAGCTTGGCTTCTTTGACATTGTTTGGGCAGGAG-TTGAGGACACTGCACGCTCACCTCTAATTTGGGGGCCCACATCCTATGTGACCCCCG--------CCAGAC---AAATCCAGCCTCCAGGCCCCACAGCTCACAAGGAA a score=5289 s mm7.chr9_random 3197205 449 + 9745104 gtagagtggatagccttgaacctcttatcctagtgtctctacaccccaagtgctgggatggcaagtatgccccattacagctggcactgaacccagggctttgtgcgtgctaggcaggtcactccgtcagctgacccccacacccagATTTCTTAGGTTTTGTTTTTTTAAC--TGAAAAAAAAAACCCCAGAATTTTAAAAGGAAAATATCTTCATTGCTGCTTACTGTCTTTCAATCTCTATTC--AAGCATGCATC-TTTTAACATCATAATATGTACTTATGCTATGTCATATTCTGGTCTTTTTTTTTCTTGGTAGCGTGACATAAT-ATTGTTTAACTTGACCCATAAATATCCTTTTAAGTAGCCACATACTATTCTCTAGCTATCCCATAGCCTGCCTGTCCGGCTCCCTGT--CTGGGAATATTTGGGTTGATTAATAATAGTAGTAA s bosTau2.chr10 5718451 343 + 70001009 GCAGAGTG---AGCCTCCAAACTCC-----------------------AGAGCTGGA-------------------------GGTAC----CCCAG---------------AAGCATCTTATTCAATAATCTCA------------------------------TTATTAACATTGAAAAAAAAA-----AGAATTTGGGGAGAAAAAAGT----ATTTCTGCTCATTGCTTTGCTTTCTCCattcatatgcatatatcattttatcataaaaatgtattcatatggtatgtggtcacatgctc-tttttcctctcaacagcatggcacaatcacttattcatttgccacataattatcatttgaa-tggctgcataatattccatagatgtaccataatttgcctaaccagttctctatggttggcca---ttgagttgtttAATAATAATAGCAG a score=9000 s mm7.chr9_random 3197830 1026 + 9745104 tgagctacacaagatcctgtctccaaggggaaaaGCCCtcctcacaggcatcctatggtg------tcagaattttcatt------atccccttaaca-------tgggggaactgaagcctaaag---------gagtcaagtgtcctccccaagTGTTCTAAGGTGGCGTTCATGAGAAACCTGGGGGTCCTGAAGTACACAATGTTCTGCCTCTGGCTTCTGTGTATTCTCACAAGCAGATTGCTGT-AATCAAGTCTCCCATTTTACTCTCTCTTCTACAAATGTCAGTTT----CCCACATCAAGAAAT------GGAGACCTAGAGCTAGGCAGCGACCTCTC-------------------------------------------CCCACAACTTCCTCCTTAGCCCCCT--------------CCCCCCTCCTCATTGCTTTCTCAGTATTTTCTGACATCTTATGGTGGTCACATCTAGGTAGAACAAACCCTGAGAACATTTGTCCCTAACAGGGTGGCCGAGCTGAAGCTGATGGAGAGAC-----AGGCTGCTCCTGTCCTGCCTGATATTG---CCCTACCAGGTATAGCAGAGTTACCACCTATGCCT-CTTCTGCCAGATTCCCCATCTTGCATACAACTGTGCCGTGCTAGTGAGAGCA---AGTGACACTCAGGATCCCCAGCGCTCTGACTGGGGAATGTCCTGCCATTTCATCCTCTGCTGGATCTGTGACTCCCTATAgggctgagactgtagctcagtggtggagcctttgtctagcatgcATgaaaaaaagaaagaaagaaagaaaCCATCGATTTATGCTTGTTTAATGGCTCCCCAACACTGAAGAGTGACCTACCTGAGCCGCACCATTGAGAGTAGCTTTCTCCATCTTCTATTCCACAAA---------ACCTATGCTGTGCATGAGGGCTGGGTCC---------------------ACAG------TCACTGGCTGCTGATTGTGGTTAGATCTGTGTTTCCCAG------------------------TCATTTATAAAAACATCTAGGCATGCAAGCAAAACCAA--GGAACTATCCGTGTACTTACAACCTCAGCACTTGTGCCGCTCAATATGAGCAATTAATTATTCACCAGCTTGACTCTGTGTTAGCAGGAAGCCACTGC s bosTau2.chr10 5718922 1035 + 70001009 taagagacac-agattcaatccctgggtctggaagacccccccagaggtg-agtatggtacccactccaatattcttgcctggagaatcccacagacagaggagcctggagggctgcagtccatagggtcacacagagtcagacat--gactcaactgacttaa---------catgcaAA---TGTGGgctttacag---gcattgttttgtcta------------atcctcacaacaa---tcctgtgaagcagg--tactatttttattcccatcttataaacgggaagccaagactcagaagaaggaatctgatccaagtcctacagctgggcaatggcatacccaggaagggagccaggccccctgctccttccttggtcaggactccagctaccccctcttgggcccccttcctcctctgTCCCCCCCACTCTTCATTGTTCCCTCATGATCCTCTGAAATCTCAAGGTGGCCACATCTGTTCAGAGCAGTTCCTGGGAGCATCTGTCCTCAGCTGACTACAGAGGTTGGAGTTGCTGGAGGGATGGACAGGGCAGGTCCGGCTGTACCTGGCATGGTTTCCATACCAGCTATGGGAGAGCCACCACCTGTGACTGCTCCTGCCCG---CCCTGTGAAGCACATGC-----CCATCCACATCAGGCCACATAGTGAGTTGCTGGGACCCCAGAGCTTTAGCTGAGGAATTCCCTCCC--TCTACCTTCTGCC-------CCACTCCC-----------------------------------------------------------------------------------------------ATGGCC-----ACACCTAAG-GCTCCCCATCTGA-CCGCGTCCATGGGAGCAGTTTTCT--AATCCTTATTCCACGGAGACACAGTGGCATACACTGTTCATATGGGCTGGGTCCAAGAGAAGTTGCCCATGGGTTACAGGCCATTTCAGTGGCTCCTGGTGATGGT--GCCCCACATTCCCCCGCCTCTCCTCCCGCCCCCCGCACCATCATTTAAGAAAACATCTAGGAATGCAAGTCACACAGATGGGAGTTATCAG-GCACTTACAATCTTGACACAC-TGTTATTTAGTATGAAAAATAAATTATTCACCAGCTTTGTACTACATTAGTAGCAAATCACTGT a score=3047 s mm7.chr9_random 3199010 225 + 9745104 ttggcttgtc-tacacagtgagctgcaggccagtctggCCATCAGCCTCATACCTGTGAAGATCAACTAGTCCAAAATAAGTTGCAGATTATTCTGCACTGGTACCAAAATTCATTTTCTAAAATAATCTATAACTTTGGACAAAATCCTTCAAAGATCCAATTTATCTTCT------TTTGTTTAGAAAATAAAATATAagccag---------------------gtatggcggtgcaggccttcaattcc s bosTau2.chr10 5719985 201 + 70001009 TTGGTTTGTCATGCACGAT---------------------------------------------ACCTAGTCTAAAATA---CACAGATTGTTCGGCACTG--AACAAAATT-ACTTTATAAAAT-GTCTGCCACTTTGTGCAAAGTCTTTCAAGCCTCCTTTTTTTTTCCTCTCCCCTTTGTTTATAAGGCCAAATATGACTCAGAATTTTCACTCACTAGATTCTGCTCAGTGGCTCAGGCCTCTGCTTCT a score=20681 s mm7.chr9_random 3199511 680 + 9745104 TTGCACATTAGATTCTGCTCAGCAGCCCCAC-TTCTA----ATTTTTGCCCCTCCTCCCATAGAAGCCTCCTTAGGTCTGAGGCCTGAGGCAG-AGTCCCCCAGGACTCTGTCTCTTCAGAATAAGGAGTGTGTCTCTCCCCAACCCTGACTGTCAGGGAGTACCATTAAGGGACCAGTCTTCCTTCCATGGATAATTTACAACGCTTGTGTGCTGTTAAAAAAAAAAAAAAAGTTTGAAGCGTTCTCTAACCAACTTAATTACCACAAGCCTCCTCCTGAAGATCGTTCCAGCTAGTTGAATATTAATCTGTAATTCCA--AGTCCCCAGGCACAGATTGCAA-ATCGCGCACAC-TGAGTCATTAAGACCACGAGCACACAGACTCCAGAGAACCAGGAACTTCCTCCTGGAACAC-GGAATGAAAATGTCTTGTGCTGAAAGTTGTGGGGCTTCTCTGCCTGATTTTCC-GTTCTCCCGACAGGTCACACTGGAGCCGGGATTCAGGGGGTGATGTGTTATGAGTTTTAGAATAAGCGGTGTTGT----TAGAAGCAGACTGCAGTGATACAATGAAGGGGCACCAACATGATGGCCCTGAGACTTGATGACTAGCACCTGAGACCCTTtgaccttgaataagtcattgccctctc--aggcaagagtatcttcatctataacagaaggTAGCTA s bosTau2.chr10 5720275 657 + 70001009 TTACAGATAAGAATCTGCCTGACAGCCTCCCAGTCCAGCACATATCTACACTCCCTTCTCTG-----CCCCTTTCTTCTACCCCCACAATCTGTAGTCCACCAG--------CCCCTTGGAAGGAGAGAGGTGCATGGTCCC--TCGTGACTCCCAAGAAGCACCGTTAAGGGACCAGTCTTCCCTGTCCTGATAATTTACAGTACTTGTGTGCCAT-------AAAAAGTTAGTTTGAAGTGTTCTCTAGCCAACTTAATTACCACAAGCCTCCTTCTGAAGATCGTTCCAGCTAGTTGAATATTAATCTGCAATTCAAAGAGTCCCCAGGCACAGATCGCAAGATCTCGTACACACAAGTAATTAAGACCACAAGTAGACGGACTCCAAAAAACTGGGAATTTTCTCCCAGAACGCAAGAGTGAAAA--------GC--GAACTTCTG-----TCCTCGCCAGTGCCCCCAGCTCACCTGGCAGGCAAGGCTGGGACAGGAACTCGGGTTTTGCTATCTCATAGGCTCTAGAACATGGGATTTTGTTACATAGtggcaggatgatgtagta----gaaacagcactggaccgggagtccatggatctagtttataggccctaggactcttttatcttgggcaggtcaccgtcccccccagagcaacagcatcctcatctataaaagaatggagtta a score=21338 s mm7.chr9_random 3201675 1282 + 9745104 TATGTGTGTGG------GTGGCTTTATTTTCCTAAGGTCGTCCCAAGAGTGTGGGCAGGGCTATTATTGGGGGCTGAACTGTGCATACACCTCACACTGGCAGTGACACATGTTACCCCTGCCTTCAATATGAGGAGGTGGTGAGGGCTGGCAG-AGGGCTTGGT-------TTTGGCTGACCCATGGGCCTCTC--AAGTTGGCCCATTCTCTCCACACTGGCACTGTGCCCCACCCACCCCCAAACCCTCGGCAGGACAGTGGGGTGCAGCCACTGAACCAGAAGCTGAAT------GTGTCTTGCAACTGAGCCAGGAG-GAAGGA--TTAAAGCAAGCTTGTCCAGAGCCTGTGGGGAGG------------GAGGGACAGGAGGGCCTTCGTGTGTA---GGGAGATTGGAACAGCAAGCTTGAGCGCTTCTACCTCCTGAGAATACACTCAAGCACATAGGTACCACTCTTATGCAtgcgtgcatgtgtgc-----ctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCGCCTTCTTAGAGCCCACACAAGCTGCCAGTAGGAGCTGTCCTTGGCTCTGTCTCAGCCCC--AAGCCTCCTCTCTGTGCTCTAAG------CTTTTGTGTACAGGTTACTTAGTGTCATTCAGAGATCTTATTCCAGGGATATAGACTGGAACAAGAAACAGAATGAAAACAGCAATTAATTTTCCTGTCAAGGATGCCAGCAGCAGCAGCAGTAGAAGGGGGTagggggagagagagagagagagagagagagagagagagagagagagagagagagagagagaATACCACAGGAGAGCATCAGGCT-TAGCAAAGCAGTTCAGCAGAACACAACACATAGATCGCACATGCACAGCCCATTAGTTCTATACAGAATCTGCAGGCCTACTacacacacacacacacacacatacatgcacacacacacatacatacacacttgaatgcacacagacacacacaTGCCCACTTCTGGGCTCAGCCACATGTAGAGGAGGTGG----GGAGAAGCCTAGCTGCCCTCTGATCCCCCCATGCCTGACCCCTCCCATCAGAAA-GGAATAGAAATGAAG--TGTTGGTTGGGCCTCTCTTCACCTCCC----------CAAGCCATCATGGCTCCAGCTGTGTGAGCCCTAAGAACTCC-CCAGGGAGCAGTCTAGTGCTTAGGGATGCAGAGCC----------CAGGAACCAAGTCC-ATCCTCCATGCTTAAGAGGCAGATGCCAAGGTGAAATT--TTGTGGTTA-----AGTTAGTGGGTCTACCTGGGA----CACTCAGAACAGAGCCTAGAGCCCTA s bosTau2.chr10 5720938 1116 + 70001009 TATGTGTGTGCATGCCCGTGCCTTTATTTGCCTAAGGTTCTTCCAAG--TATGGCCTTGGCTATT----GAGGCTAAACATCACATAAGCCTCATGCTGATAATGA------TGAACTCTGCCATCAGCAGAAGAATGTAGTCGGAGCTGGCAGGAGTACCTGGTGACTCACCTGTGCTGACTCAAGAGCCTTTCTGAAGTT------------CAGTGCTGGAACCATGAACTCCTCAGCCCCA-------GGCAGGTCAGTGGTATATAGCCACTGAGTCAGAACCTGAGTTAGCTTGCTTATAGCCACTGAATCAAGAGAGAAAGAATTCAAACCAGGATAGTAGAAAGCATGTGGTGAGGTGCAGTCCCTGGGAAGGGTGAGGGG---TTTGTGTTTGCTTGCAAGGCTGGATCACCAAGCTCAACTTCCTCCACTTCCCAGGGA--------AGCATGAAGGTCCCTGTCCCAT-TGTATGTCCATCTGGGCAGGATCCCTTTGTGTG--------------------------------------------------GAGACCAGATGGG-TACCCGCGAGAGCTGTTCTTGGCTCTCTCTCATCCCTGGAACCCATCTCTCTG-GCTCTTAGAAAGGGCTTCTATATACAGGTTATTTAATGTCATTCAGATATCTTATTCCTGGTATATAGACTGGAACAAAAAGCAGAATGACAACAGTAATTAATTTTCCTGTCAAGGACGCCAGCAGC--------------------------------------------------------------------------------------TTGGAGAGAGCCAGACTGGAGCCAGGGAGCTCTGCAGAATACTG-----AGATTTTGAATTCACAGCT-------------CAGAGTCTCTGGG--------------------------------GCCCAC-CCTGTATAAAT---------------------------CACGTCCACTCTGGGGCTCAGCCACACGTGAAGGAGAGAGTCAAAGGGAACTCCGTTTACTCTCTGG-ACCTTGATACTTGGCCTTTCCAATCAGAGATGAAATGGAAATGAGAGTTGTTGACTTGGTCCCTTCTCACCTCCCTCCGAGAGCTCTAGCCAGCGATTCTTTAGCCCTGTGTACTTAGAGAACTCAGTAAGGGAGAAACCCAGGGCTTAGGTAAGTAGGACATTTTAGCTGGCAGGAACCAAGTCCTATCCATCATTTGAAAGATGTAGAAGTTCAGGTCTAGTTACCTGAGGttacgaagaggtggtaagagtacacagaagaactatacaaaaaagatcctaatacccca a score=4057 s mm7.chr9_random 3205763 106 + 9745104 CCCAATTTTAGATGTAGAATAGGAGATGAATTGGCAGGTTTATTTTACAGGTCTTTTAACTGTCTGCCTTCAAAGCTCTCCAATTCAATTCAAA---ATACTGTCACCC s bosTau2.chr10 5725106 109 + 70001009 CCCAGTCTTTGATGTGGGGTGAGCCATGGATTAGTACATCCATTTTATAAGTCTTTGGGTTGTTTGCCTTTTTAGCTCTCTACCTCATCTCAAAGATATCAAGTCACCC a score=16516 s mm7.chr9_random 3205952 634 + 9745104 TTTGTTTATTTGTGTTAATAAG---GGTCTTTTTCCTGGGCT-GAGTGCTGATGGGTGCCCAGCTAGGACTA-CAGTAGTTTGAACTGT---TTGAAATCCCTGGAATGCGCCG-GGCTAGACACAGCTGGATCCACAGGATCATTTGGCATCAGAAGCTCAACTCCCCACCAAGGCGATTCAGGCAAGGAAACCTGTGATCAGCCACTTTTCA------------------------------TCCCCAACAACT--CTGTCAGGCTGCATTCCTTCCCGCCCACCCTGGTGTTCAGTTAGCTGCCAATTAAGCTCCCAGGCTTCCCTATccccccccccccccccccccGACTCTGGAAAGGAGAGGACCAGGGAGTTCTCAGCTCAGGTTCAAAGGCATCT-GGCTATGTGCCTGAGTTTATCCTGGCTCCCTTCTCAGAGACCTAGATTCCTTTGAAAGTGAAATGACTTA-----AGAAGAAAAGAAGACCCCACATATTGGAGAGGCATCTCCCCACCAAGACACATTTGGTTTAAACAGCCACTTCTGGTAGCTTGGGCCATTCTGGGGCAGCCTCACAC-----------------------TTTAGGTGGGCTA-ACCTCCTACTCAGCTCCCCTGGGGACTCAGTTACAAGGCACAGCAGCAAAGAAGGAATTAGAGGAGAGGGAGATGCAGAGC s bosTau2.chr10 5726886 663 + 70001009 TCTGTTTGCTCATTTTAATAAGATCGTTCCCTCTCTTGATCTTGAGTGATGACAGGTAGCCAACTAGAACTAACTACAATGTTAACTTTGCCTTGAAAGCCTCCACCTGCTCCCCAACTGGAGACAGCTTGAGCCATGAGCTCATTAAGCAACAGAAGCCTGTCTCCCCACCGCCTGGATACCAGCAAGAAAACCCATAATAGACCTGCTTTTACATTGAGTTGAAAGAGCATCACTCACCCAGTCCTGAACAACTTGCTTTCAGCCC-----CCTCCCCATC--------TCTTCAATTAGCTGCCAATTAGGCATCAAGGGTTCCCTAGCCTCCTGCCAGCCCCT----GACCTGAAACAGGAGAGGACCTCAGAGCTCTCAGCCCAGGTTCAAAGGCATTTTGATTGTGTGCCTGAGTTTACCCCCACTCTCTTCACTTGGGCCTGGCTTCCTTTCAAAGTGAAATGCTTTAAAGGGAAAAGAAAAGAAAACCACACAAACTGGGGAGG------CCCACTGGGACCCCTCTGGTTCAAACATCCAGTTCAGA------GGGCC--TCCCGATCACCCTCCCACACAGCTCCCAGCACATCCTGGGATTCAGCTCACCTACGCCTCCCACTCCAACCCCTTTGGCTCCCAGTCACTGGG-----------GGAGGGGGATGGAAGGGAAAGATGGGTAGAGC a score=6539 s mm7.chr9_random 3206617 462 + 9745104 GTGAGCTATTTGAATATAATTTTCCATCCCCGTACCCCAGCACTAAA--------------CCCAACGA---------------TGTC-----ACACCCCGGGTATGACATGTCTGCCCC--AGCCTCCTTTTGTGTTG-------------TCCCCAGTGCCCCTCTTTAT--CTAAG-CTGCTCTTCCT--AGGCCTCC----TCCCTCCTGCCCACCAGACCCAAAGCTATGC---CTCTGACTGCCCCACCTCCCACCCTGTACTGTGTG-ACCTGTACCTC-------------------CTCTGGCTATCTGATCTTTGATGTCTGGCGTGACTGAGCCTTCATCT------TGTGCTGT--------------------ACATCTGGCCAGAGTCATCAGGACTCACCGGCAGGAGCTACACC-TTTTCTCAGCCCTGACTCCTCTACCCATTTCTCATGTAGAGTTTTCAATGAATTattcattgaatcaacatatattaatatcgagcccctaatacatgccagacaacatgtcagggactgtgtgtatagtgaagaacaa s bosTau2.chr10 5728557 548 + 70001009 GTGAGCTATCTGAGACCAAACTTCTGTCCCCACTGCCCAACTCTAAAGAAGGTAGAGATGCTCCAAAGAGACCCTCCTACCAATTGTCTCCCTACAGCCCATG-ATGACAttcctgcctccaggcctttgctcatgctgctgtctccagcctcctccaccactctcccttatgcctaagtccattcttctttgaggcctacggagtcccatctcctc------cctgaagtcttccccgCCCTGGGGGCCACACCTT----------CTGTGTGTACCTGAAGTTCACAGAGTGCCACCACTTCTCCCTGGCCATTAGCTCCTTGACCTATAGAGAGACTTCTCTTTTGTCTTTTTTATGTGTCATTGTGACTACCGCCCCCTCCCATCCCAACCCCCGGTCATGAGGACTGA-GGGCAGGAGCCATGTCATCTTTTTATCCCCAGGTCCT-GAACCATTTCTTACATCGATTTGT---TGGTTTGCTCACTGAATCAACATACAGTAATATGGGGCTTCCAACACCCAGCAGACAGCGTGCCGGTCATTGCATGTACAGTGGGGAACAA a score=3909 s mm7.chr9_random 3207423 112 + 9745104 TCCAAAGCTGGGACTGGGAACTGAGGCCTATTGG-----------------ACAAAGCAAACAGCAATAGGCATGATGA-GTTAGAGCCAACCGGGAGTAGGAGGGTTCC---AGACTTCTTggaggaggagg s bosTau2.chr10 5729820 122 + 70001009 tccaaagct-----------cTGAGGCCTGATGGGTAAGCACCCACTTCAAACAAGGCAAACAGCGGTAGGCACAATGACTTTAGAGTGAATGGGGAGAAGGAGGGTTCCTAAAAGCTTCCCTAAGGGAGAGG a score=4393 s mm7.chr9_random 3208967 674 + 9745104 AAGCCATGCTCCATGTTTCCACTGACTTACTGTTGCTGGGTCTAGCCTGTTCTTTGTGGGGTTGGGCCTGCAACACCAGAGAGGCATGACTTTGAAGGCAGAGACCTT--GATCCACCTTAACTGCCTCTCTATGAGTACCCACTGCAGGGCTGGGCCCCTGGTGACTTCTCA-----GAGAGTAGATTGGAAAAACTTCCTC----TGCCACAGCAGAAATCCCTCAGTAAGACCGTTGGAAGGACTCT----------AGGAAACTAAGCATAGACCTTGAAAGGCAGAAA-------------CTGGTTC--ACCACACGCCCTTTC---CTTTCATTCTTCAGCTCTGTGTGAGGTCCAATAGAAA------------------------------------------CCACGCCATG--CCTGGACCCAGGACTACACCACCTTAGAGTTTGTGGGCC-CAGAGTGCCATATGCTCACATGGGTTGATCCTGTTTTGTTTTTTTGTTTTTTTGTTATAAGGGACCTGGAAGGCT-------TAAAGCCTTCCC-----CGTGACAGA-----------------ACCACAAAGATGTCACTCAGGGGTCC---TCTGTGAGAAGAACATGGTATGGA-TGGTGGCAGTGTCCTAGGGTTCAGT-----CCCTGTAAGATTCATGTTTGACTCTCATAAAGACATCCCATGCC---------------------TTCACCTCTTTCTTGTGGACCCCACATCCTTGATGGGGG-------CTCACTCTGGGGACCATCACCAAGTTCTCTGGCGCgtgca s bosTau2.chr10 5735196 778 + 70001009 AAGCCAGCCTCCAC--TTTCACTGCTT--CTTTCCCTGCTTTCCGCATATTCCCTGTGGGG--------ACAGTGCCCGAAAGTT----CCATCAGAACAGAGACCCCACGTGCCACTTTGACTGCCTCTCC-TCAGTGTCCATGGCAGAGCTGG-CCGGAAGTGGCTGCTCACTGGTGAGGTGAAGGAGAAGGCACTACTttaaattgcagca--agaaattcctcagctagaccagaggaagaactttctgactgtgagaggaattaaaca--GACATTTAAAGGCAGAAAAGATCTTAGAAGATGGGTTCCCACCCCGCCTCCATTCAGCTGTTTAACCCTTTGTCCTGTGTGAGAACCCAGAGGAAAACTCAGCAGCTCTGGAGCTGTGGAGGTGGGCGGTCCAGAGCCCCTGTCATGGCCCCAGCCCCAGGTATAGGACCCTGTGGACTCTGTGGATTGCAGCTTCACACCCACTCATCTAGGCTAATCCTATCTC-------------TCTGCCATGGGAGACACCGAGGCCTGGGTGGGTGGTACCTTCCAAGGCGCATGACAGCCTGAGAGGGGCTCTCCCACCAGACAGACCTCACTGTGTGAAGCAAGTCAGAGTGAAAGGCACGCTGGGAAATGGCGGATGAGGCTGTGGGATGAGTTCACACCTCATGGGAGACAGGCTTGTACCCCATGAC--CTTCCAATGTCCTTTCCCGCTCGGCCTGTAAGTTCACCTTCCTC----AGACCCCACATC-----TGGGGGTCCCACTCCCACCCCACAGAGCTTCACCAAATTCCCTTTGATCCCCA a score=6762 s mm7.chr9_random 3209716 243 + 9745104 TGGAACCATGAAAGG----------CAGTGTGGGCTGGGAAGGG---------------CAAG-----------------GGGTCTGCGGCTCCTTTGAA-GCCTCTTCCAAAGAGGAAATCCCTTTGTGCACTG-CGTGATCTCTGAGGCTCTCCGGGCAAATTGGGAAGATGAATCAACTGTGGGGGCCCCGGAGCTTCAAAGGCAGTGTAAGGTGGCAGATCA-------------AGCTGGTAGAGCTGTTCTCATTAAAG----CTGG---------GGGTGGTGGGGGCTCCCAGCAGAGCTGAGGA s bosTau2.chr10 5736009 311 + 70001009 TGGAGCTTTGAAAGGGGGGTGAAGGCAGGCCCCGCTGGGGAGGGTGCCAGCCTGGGCAGCAGGACCCCTGGCTGGTCTGTGTGTCTTTGCCGCCTTTGAAAGGCCCTTCCAAAAAGGTAATTCCTTTGTGCGCAGACATGATTTATGAGACTTTCTGGGCAAATTGTAGAGATAAATGGTCT-TTGGGGCTGGGAAGCTTCAAAGGCAGTG-ATGCAGGCAGATCAGAGAGAGCCAGGCAGCTGGGAGCTGGGGCCTCATTAAAAGCCTCTGGTACGGGGAAGGGGGCAGGAGGCTCTGAGCAGAGCCGAGGA a score=7770 s mm7.chr9_random 3212624 213 + 9745104 AACACCACAGAGAGGGTAGCCAGTGCAATGAATAGACCTCTAAAAAAGCTCGTGGTCCGTCAGTATAATCCTATGCTCCGAGTGTCTGTCAAGACTGG-GACAGTGTCTGGAGATTCGAGTTTGGATCTACAGTACTTGGGTCTGTGAATATCTAATTGCAACCATCTCAGTGGAGGGAGGA----GAGTTGAGGGATGGATCCTCTCAGATCCCAGG s bosTau2.chr10 5738825 212 + 70001009 AATAACACAGAG----TAACAGATGTAATAAACAGATCACTAAGA--GCTAATGGTACATCATTATAATCCTGTGCTGTAGGCATCTGCTAGGCTTAGAGACTGTGTCAGGAGATTTGGGTTTTAATCTACAGCACCTTAGTCTATTAATATTTAATTCCAGCCATTTAAGTGGTGGAGAGATAGGGAGCAGAGCCATGGCTTGGCTCGGAGCCTGGG a score=7823 s mm7.chr9_random 3212965 484 + 9745104 cagtgtgactggatcttgaaaacattatgttaagcgaaataagtcagatacaaacatctgctcctgtatggtttcactcttacgaa-tggctggcgttggcaaat-----------gaggaaagatt-gaggtttcgtgacggccaa---gtatgggaagtcattg-taattggttgtaggagtatctctggaggctgctag--aaggtttggaaatgatagtg--------ttaaCACACATGA------CAAATGCTATCAGGTTG--TGTACATATGTGAATAAT----ATGG-GAATTTTATGCCACATAACT-------CAATAGAAAATATTAATAAGTCAATATGTTACCTGAAGAGAATAAAGTGATAGGAAATAGTATCAGCCATGGAAAACCAGGG-------ACCACTATTTATACATAAACTAACCTCTAAACAAGGTACTGATGGGAAGTGACCCTCTGTTCT----TCAtcctgcaa-----------------------cccaggctggcttcaaactact---------------------------------------gtatagcggaggat-gacctcgaacccctg s bosTau2.chr10 5742006 602 + 70001009 cactgtggaacaaccttgaaaacggtatgctcaatgatagacaccagacacaaaggactaattttgtatgattccatttatgtgaaatatctagttgaagcaaattcatagaggcagaaggtagattagaagttgccagatgggaggaggggatgtggagttattgcttcatggttccag-agttccagttgagggtgatggcaaagttttggaaatagcggtgatagctgcttaacac-catgagtgtcattaatgctactgaattgactgtacatttaaaaatgattcaaatggctaaatgtatgttatacatgttatatgacaatagaaaaAGTTCAGAAG-AAATAAATCATCTGAAGAGGATAAAATTACAGGAAATAGGGCCAGTCATGAGAAACCTGGGCCTTATGACCACCACTCCCACCTGAACCAGTTCCTGGATAAGACCCTTGTGGAAAATAAGCCTCTGTTCTCACATCTTCCTGTGAGTCATCCATGGTGGTCATCTAAGCCCAGGCTGGCCACCGACATCCCACGTCCCCTCTTCCATCAACACCAGGCCATGCCCagcaggacagcaggggttagagctcagacaccta a score=15579 s mm7.chr9_random 3213745 749 + 9745104 aaagtcaacttggcacctgcagtacacggcctggttgtatagtaactgctccatcaaatatGGCGACAAACTGAGAAGCCTGTTTATAGCGAAGTCACGAAGTCACGGTGGAAGAGAGCTGTCAAACCGCTCCCTGTTGTGAGGACCCAAAA-CCCACAAGGCTGGATCCTGGAGTCTGAAGGGGTCAGGTGGG----------------AGGGGCTGAGCTG-------------------------CCGGCCTTGTACATCTGGGTATCCCTTAAGCCCTGGGTAGCTGCTCAGAGAAG----------CTGAAAAAT-CAGCAGAAACCAAATATAATTAGAGAGCAGAGTCCATGAAAGGGTGAAGGGAAAAAAAAGCCCACCTACGTGAGGTT-TGACACGGCCTGGCTCAATTGGTCAGAGT--GCGTAGATCCACGGAGGAGCACCAGGCCCC--TGTAATTGCAG-ACTGATCGCTCT-ACTTGCCTTCAGCAGAGTAGATAATTAACTCTCCCGGCTCCGTCTCATTTCCCTATCACCACTGAGGAATGAGGAGTTTTTATGTGAATTTTTCCAGATAACTGAAGTTGATCCCTGTGGTCCCTAAC--ATTTTTTCCCATTGAGTTACTCTGGGGGAGAAATTTCTCTGCGATGGGTGACAAGCTTCCTCGCTTCCCTGGTCAGAACTGTTTAACTT-AGCTCAGCTTCCTCCTGCTGGCTCAGATACCAGCGGCTGTGTGTCTGTCCTCTGATGGCTGCAGGTAGCTGTACTTTCTTAGTCTCT--GTGTTTTCTGTTTATTTC s bosTau2.chr10 5743013 783 + 70001009 AAATTTTACTTTATGCGTTTATCTTATGGCCTGGC-ATGTATTCGCTGCTCCTTCAAGTGTTGTTAGAAATTTGAAAGTATGTCTGTGCTGAAGGTCAGAGGT-----TGAGAGAGAGATGT--AGTCCCTCCCC-TTGTGGGGGCGGGGGAGCACCCAGACCTGGGCCCCACAGCACAGAGGGGTCAGCTGGGGAGGCGCAGGCTAAGAAGGGAAAGAGTTGGCCGGACTAAAGGAACAGAACAAGCCAGGCCACAGACTTTCGGGCGCCCCTCA-GTCCTCACTCACTGTCCAGAGAAGATACACCCACTTGAAAAATTCACCCAAAGCCAAATATAATTAGGAAGGAGCATCTGTGAC----CGAAACAGAAAAACAGTCG------GTGAGGGGGTGACATTCCAAGGCCAAATTGGAAAGAGTTTGCGATTGTCTGTGAAAGAATGCGAAGTCCTGTTGTAATTTTAATGATGATAGTTTTTATTCACCTTCAACAGGGTAGATAATTGACTTACT-------GCCTCATTTCTCTGTCATTG-TAGGGAATGAGGTGTTTTTAAGTAGATTTTCTAAGATAACTGAAGCTTATCCCTGTGAACCTTAACTTTTTTTTTTCCACTTAATCACTCTGGAG--GGAATGTCTATGGAATGGATTACACACTTCCCTGCCTCCTTAATCAGAATATTCTAAATTGAATGGAACTACTTCCTGTCAATTTGGACGTGAGGGGTTATTCG-CTCTTATGTAGTGACTCCGAGTTACTTTGCTTTGTCAGTCTACAGATATTTTCTATTTATTTC a score=3817 s mm7.chr9_random 3216226 217 + 9745104 GCAACAATGTAACTTCCATGACCCTCTGACTTGCGGTCTATAACTTAGAGAATGAAGGGAACCTGTGAGGGTTAGATACTGTTCCTGCATCCAACTTCCAGGATGGGGCCTGGCACGTGGGGAGATTTAAACAGCCCTG----TCATTGTTATAATGGAATCACAGCACATACACGTTGAATGC---------TAACTATGTGCGCTTGGCAATGAAGAGAGAGGGAGGA s bosTau2.chr10 5744375 202 + 70001009 gcaatcacataatttccctgagcctttatttcctcatctgtaagatggagaaataataaaatcta-------------------attcacaccgttttaag---------tgtcacaagtgagcatttaaaatgTGGTGGTTATTATTACTACAATGGAATCACATCATGTGTATGTTAAACTCATGCAAATTTAGCTATATGTGCTTGGCAACAAAAAGAGATAGAGAA a score=4077 s mm7.chr9_random 3216769 142 + 9745104 AGCGCACACACAGTGGATAATTCTGTCAGTCTTCTCACCCGCTGGGAAGGTTTCCTGGAAAGAGAGTGAGCTGGGGGATGCTGCACTGCTAC---CCTTCAGCTTCTCTGTCCCGTGAGCCGCTCTCAGCATGAGAGGAGCCTGT s bosTau2.chr10 5744577 141 + 70001009 ATTATACAC----TAGGTAATTCTGCTAGTCTTTCCATTCACTGAGTAGATGTTCCAGAGAGAAGGTGACGCAGGAGACACACGACTGCTGCGTGCTCCCCAACTCTCTGTCCTGTGCGCCTCTTACAGTGTGAGTGCATCTCGT a score=44278 s mm7.chr9_random 3216925 2707 + 9745104 TGGGAAACTGAAGGCGATGTCCACTCATAGTTTGGCAGCCCAGTCTATTTGTGTCAATATTCAAGGCACAGATGAAGAAGGCCACAGATGAATAAGCCAAGATGAGGGGGTGTGGATCAGAGACTCAG-TAGTTCTGTCTACTGCAG-GGTAAACAGATGC-AGGCTTCTGGATAGTGACCCAACCCACTAT----------------------CAGGAGAGATTTGTGTGACCCTGGCAAAG---------------CTGGTGG-------AGCGCCAGCATGTTCACAGGCCACACCC-ATCTCTGCCTTCTTGTGCCTGCTTAGCACCTGAGTGCTTCTGTGTATCTGTTCA-----------CCCCAAGGACACCCTTCCCA-TACCACTCACCTGACCCTTTCC---TCCCAGGGTCTAAATCCTAGAAAGCTTGGGTACAAAGATCAGCTGGCCATCT--GTGCCCACAGGCAGCagagccaccctccactccagcttgcccagggctgaggtgctctttggaattgaggactttcggtgctgaaagcaagacagatggtcctctggcaggcagacaagtgagccatcttTCACTGCCCTCTTGCAATGTGGAGCCCTC---------ACCTGACTGCCTTAACTGGAAGCAATCTTTCTTGCCTAGAAACAGAAATCCTAGAACAGTATTTGTGCCTGTCATTAACCAAACTCCAC------TCCCACTCAAAGCTCCCAGTTGTTGGGG-----------GACGTCTTATATTTGTTGTGCCCTGAGTGCACCAAA--AGGGTCAAAGTGGGAGGTGATAACAGGCTGGGTAACTTTCCTGAAGTTCTGGGCTACTCTGTCCCTTTCCGTGGCT-TAGAATGCAGGTCTCCAGAAAGCC---------ATCAGTCTTGGAAACATTTAATTACAGGAATGGATCTCCTAGGTTGTCTGTCACCTCCCAGGGATACAATTTTTTTTTCCTGCTCTTTCTGAAGGA----GCTTGGGCAGTGAGGAAATTGAACTGAGGA---AGCAAGTAGGGGGCCTGAAAGTATTCCTGGAAGGGAGG------------AGGAGGAGGGAAGGGAGAG------------CCAGGGGTGTGCACAGTGAGTCAGAACCGTCCTTAAGTAAATGAGA------ATGTGAGA---------GGTTAAGACTGTGAGTGGGACAGAGAAAAGAGGGCTTCACAGGCCGACATGAGGCTGGGCCCAGCTGCCTGGAGAGGAACAGGGTCACAGAGCAA---GGTGGCAGGCATGGCAAGAAAAGGTCCAGCTGAGAGGAGTAAGGATAGATAGACCAACCAAAGAGAGCTTCCCAGAG-------------------------------ACAGAGGGAGG---CAGAAAGCTG---TGACCAGGTTTGCATTGGAGGAGGTGCCCGTGGC------ATCGATTGAAGTGAGCAGCAGCGCTGGAAGGCCTTTGAGGCTATGCCTTCTTTAGCTCCCGTGAACAC---TCGGTGGCTTGGTGGAGCCTGACAGAGGTCTCCAGATGCCAAGGACTCCATCCAGATACCCGCAACAGCTTGGTCTCCAGGG------GCAGAGGAGATGGTAAGGCCAAGTGGACCCTCGTTCTAAGGAAA-----------------GCTCTGACCCAGAGTATCCTTTTTTGCAGGCTGTGACAGCGAGCACTGGGGTCCCCACTGCAGCAACCGGTGTCAGTGTCAGAACGGCGCCCTGTGCAACCCTATCACCGGCGCCTGCGTGTGCGCCCCGGGCTTCCGAGGCTGGCGCTGTGAGGAACTCTGCGCTCCTGGTACTCACGGCAAGGGCTGCCAGCTGCTCTGTCAGTGCCACCATGGCGCCAGCTGTGACCCGCGCACTGGCGAGTGCCTCTGCGCTCCTGGCTACACAGGCGTTTAGTGAGTAGCGAGGGCGTGGCTTGGGGTGGGGCCAGGGCGAGATCAGGACTCCAGGGGTGGGGAAAGAGGGGTGGGGCAGAGCCAGGAGACTCTGCTGGATGCCCAGCTGGGGACAGGGTGGGGGGGGGTGGGGGGGTGTAGGGAGGTGGGTAGCGTGGCCTGAATGACCCTGGTTTGGAACAGGTCAGGGCTGTGGCCTGGAGGCTCTCACCAGGGCTTTCAAGGCTTTTGGGCCACTTCTTAGCACCCTAGTAGGCAGGAAGAGCAGAAAGTCCCGGTTGTGACATCTGCCCTCTGACCCCAAGTGCCCCAGTGTCTTTAAGTACCCAGGCCTCACCCCTACAAGTCTCAGA---------TTCAAGCCCTTAAATACCTGG--------------------------------TCCTACTGGAGACAACTCACATGGCC-------AGAGGGCCCTTCCTAGTTAAGG-GACACAAGTGAGTTTGACCTCCTCTTCTAACTTTCA------------TACTATGCCTGTTTGCCCCATCCTAATTGGGCCTGGTTAGAGCCCATCTGATGTATCATGTGCAGAT-------------------TGGCCCCTCACTTCTG-----TGTCCTGGGGAAGCCATACTGATAGGGATTCCCCA-GGGCAGCTTA-TTGGACACTCTCACAGACAAGACTGGTGCTGTCTTT-CCAGCCCAGCTGAGGCTCTCTAGTGTTCT-------CTTAGATCC-ATAGCAGAAGCCAAGGATGCTGGCCATA-AGACATCCTGGATTGACAGGCTCTCCTGCCCCAGTATCTGATCAGCTCCCATGAGGCCATGGTCATTGGAATGAGACCCAAGGCAATGA-TACAGA-----CCTTCCCTACACTCCCACAGTGGCTGGTCCCCACACATGGCAGCTGGGAGCCTCTCAGAGCCCAGGAAAGACATTCCTTGGAGTTTCCAGCTTTTACCTTTGAAAACAGGCAGGTTTTCAggggctggagaaatggctcagtggttaagagcactggctactactcttccagagctt s bosTau2.chr10 5746402 2637 + 70001009 TGGAAAATGCAGAGTGAGGCCTACTCAGAATTTGGCAGCTCAGCTTGTATGTGC----ATTGGGGGCACA-ATGAAAAAGGC---------ATGAGGCAAGATAGGGTGACTGGGATTCCAGGCCGAGGTGGTTCCATCTACTAAAGTGATGGACAGTTTCCATGACTCTGA--------CCACTTGACTTTGGTTAGCAAGTGGGAGGTAATGCAGGAG-GATTGGTGGGGC--TGCTAAAGTGATTCTCCATCACCCTTGTGGTTCCCAAAGAGCCCGTGTACTCATTGGCTTCACTGGAACCTTGTGCTTTTGTCTGTATCCAACACTTGGGTACCACTGTCTGTTTGCTCATCCTGAGCCTGCCCCTGGGACACCTTCCCCAATCCCATTTGCCTGCCCCCTTTTCTTTCTGAGTGTCTAAACCCTAGAATCACTGGAGCACAAGGTCCATTAATCATCTCCTTATCTTTAGGCAGTAGGGACTCTAGCCATTCCAGTCTGCCCAGCACTGAGAGATTTCTCAGAATGAGGGATTTTCCATGGTAACA-CAGCACATTTTGGTCACT--CTGATAGACAAGTGAGACATCTTTTATGGTTCACTTCAGGTGCCGTCTCTTCTAGGAAGTTGCCTGATT-CCTTAGCTGGGAGCAGTGTTTTTCTCCACTGAACATC--TCCTAGTACATTATTTATGCCTGTCCTTGCCTTAACTCCACATGCACCCCTACTCCAGGATTTGAGAGAATGAGGTTAGAGTTGAGGACATCTTGT---TGT-GTGTCTTGTATGCGTCAGGTGAGGGTCAGGCTAGGAAGTGGTAGCAGGCTTGGCAGCCTACCTGAAGACT---GCCATTCAGCCCCTCTCCACAGCCACAGAGTATGAATTTCTGCAAAGCTGGCTCAGCTATCACTCTGTGAAACGTTTAATTACACATAAAGATCTTCAAGGCTGTCTGTCACCTCCCAGGGAAACA-TTTCTTGTTCCTGCCCCTTCTGAAGTTAGCTGCTTAGAAAATAATGAGATTGAACTGAAGATGAAGGAAACAGGGGG--TGTCAGCATTACTGGTAGGGAGACGCAGTGTGCAAGGGAGATGGGAAGGGTGACGGGGAGTGGAGCCCAGGGAGGGGCAGGGAGTGTGGAGACCTGTTCACAGAAAGTGAGATGCAAGCCGTGAGACAAAGTAATGTTTCAGGAAGAGATGGAAAGAGAGAGATGGGAGCT---------------GGGCTGGGAC-AGCACCAAGAAGGGGAGTAGAGTCACAGAGAAGAGCGGAGGCAGACTGGAAGAGAAAAGGCCTGGCTGAGAGGAGGAGAGA-------GCCAACCAAGTAGAGTTTGGCAAAGGTTAAATAGCTTATGGTTTCAGAGTTCCAGTACAGAAGAAGGGTTTGGGAGACTGGATTGACCAGTCTTGGCTGGATTGGAATGACCCTGACTAAGAGATGCATTGA---GAAAAGAAGCTTCTGAGCTTGTTTGA---------TTCTTTAGGGGATGGGGGTAGAGGTTGATGACCAG-------CTGATGGAGGTTAT----TGGTGAACGCTCCCACCAGAACCCCCTTACTGCCTCTTGTCCAGGGAAGATTGATGCAGAGATGGGAAGGCTGGTCCCAGCCCCTATCCAGGAGAATCCACGGGGATCCTTCTGCCCTGACCCA----CTCCTCTCTTACAGGCTGTGATAGCGACCACTGGGGCCCCCATTGCAGCAACCGGTGCCAGTGCCAGAATGGGGCCCTGTGCAACCCCATCACAGGCGCCTGCGTGTGTGCTGCTGGCTTCCGAGGCTGGCGCTGTGAGGAGCTCTGCGCGCCAGGCACCCATGGCAAGGGCTGCCAGCTGCTGTGCCAGTGCCGCCACGGCGCCAGCTGCGACCCCCAAACGGGCGAGTGCCTCTGCGCACCCGGCTACACCGGTGTCTAGTGAGTA---------------------AAGCCCAGGCGGGACACATGC---------------AAAGGGGTG--------------------------------GCTGGG---AGGGTAAGACGGG-------------------------------------------------GAAACACGTGAAGG-------------------ATCA-----------------------------------------------------AGAAAGCTCTGGCTGTAAAATCTGCACTCTGGCCCCAAGTCCTGCAGAGGC--TGAACTCCCAGGCCTCACCCACACAGGTCTCAGATCCCTGCTGTCCAGGGCCCAGGGTGCCTGGAACTGGCTTGGAGGACTCGTGGATGGATGCTCTCATGGTGGGAACAGCTGGCTAAACCTTCTTCTAGGAGACCCTTCCTGATCTGGGCTCCAGATTTTGGCTTGGAATTCTCTTCTGATCATAATCCAAGTGCCATTACTGAACCT-TCTAGGCCATTTGAGACAGAGTGGGTGAGGGCCCTGGGCAGATATCATGCTTAGATTTGGGGAGATTACTGTGCCTGGTCCTCTTCCCCTGCCTTTTCCCCTCATCCAGTTTTCAGGAGAGGGAGTCTGCATGGACAGGATAGTTGTGACCCCTCAGAGGCAAGATTGACGTTCTCCTCACCACCCTATCAAAGGCTCAGTGGCCACCTCAACAGCCTTAGATCCTGTGGGAGCACCCAAGCAATCTGGCCACAGATACATCTCTGATGGAGGGTGCCTCCTGCCCGCATGTCTGACCAGCTCC---AGGGCCAAGG-CATTGAGCTAAGGCCCAAGACCAAGACCACAGGCAGACCCTCCCCTGCATCTCGGCAGTGCCCAGT----------------------CCTTCTAGAG---------------------------------------------------AAGCTTATGGGGGT------------------GCTGAGAGC-------------CTTCCAGAGCCT a score=18037 s mm7.chr9_random 3219800 711 + 9745104 AGGCAAAATC-CAGGGCCACATCTTAGCACTGTTGCTTGTGATTTTTTTACCCATCTGGCGTGCCCTTTCACCCTCTCCGTGCAATCGTGCAATCC---TGCAATCGGCTTCACCTTCAAAGCCTAAGTAAA---CCATCTTCTTAGGGAAG--TCTCTCAGCCT--CCTCCCCAGAA----CCTCTGAGTGCTGGCCCAAGTGCCCTACAGTTCAATATATTATATCTGTCTCCCCCCTACTGGCAGGGATCAGAACATCCATGCTTACAGATGGTGGGGA-GGGGTTTCAGGCTCTCAAGTCTGCAGGTGGGCTGGTTGCTGATG----TCACCCACACCTGGGG-------------GGAGGAGTCAGGTG-CCTGGGACTGAGCACTAGGTTGCTTTTGGGAATTCTGCTGTCT----GACCTCTTCCTCTCGCTGCAGCTGTGAGGAGCTGTGCCCCCCTGGGAGCCATGGAGCTCACTGTGAGCTGCGCTGCCCCTGCCAGAATGGAGGCACCTGCCACCACATCACTGGCGAATGTGCCTGCCCTCCAGGCTGGACGGTAGGTGGGCCCTCAAGATCTAGGT-GGGCACCGTAAGATGTTTTG-----------------GCACCATGAAAGGCTAAATTCCCCCCAC-----------CCCTACCCCTGTTTATAGTCATAAGCTGTCATGTGACACTAGCAG-----------------------TGAAGAGTCCCAGGTCTAGGGTctgtgtggctgaaggcaagttacttagcctttttgaatcagtGGC s bosTau2.chr10 5749082 736 + 70001009 AGGCAGATTCTCATGGCTAcatctcatggcctttgcttgtgctgttcct-tctgcctggcttggccttcctccccttc---------------tcccagtgaaactaactttacctttaagactcaagtaaaatgcctccctcttaaggaagatttcctctgctttcccaccccagaagagccctcttctT--TATACCGAAAGCCCTTAAGT-----------------CATCCCCCATACTGAC--------------CCAAGCACACAGCCTCCAAGGACACTGTCTGAGTCCCTC-TTTCCCCTCCTGGCCTTGTGCCTTGTATAGTTCATCCTGACCGGGAACTCACTAACTTCTAGAGAGCCCAGGAGTCTTGGGACTG-----------GCTTT---GCATGCTGCTGCCTCTCACACCTCTGCTTCTCTATGCAGCTGCGAGGAGCTTTGCCCGCCTGGGAGCCATGGGGCTCACTGTGAGCTGCGCTGCCCCTGCCAGAACGGGGGTACCTGCCACCACATCACTGGCGAGTGTGCCTGCCCTCCAGGCTGGACGGTAGGTGGACCTGCAGAATCGGGGTGGGGCTCTGTAAGAGGTCTGAGCATCCCTCGTTCACATGCACCCTGGAGAGCTAAATTCCTCTCCCATCCTGAATAGCCTCCATCCTCTTTATGGTCATGGG-GATCATTAGACACTGCCGGGGGGCCATGGACACAGCTTTGACTGCCGGGGCTCATATctaaatgctgtgtgatctgaagcaagttccctaacctttctaaacctgtggt a score=24146 s mm7.chr9_random 3220891 2661 + 9745104 CACATATTCATGCTGACTCTGTGACTGCTAGAATCTGTTATGTTCCCAAGTGCTTCAGGTACCTCTGCTGCCTCCTCTCCTATCACAGGTCTCTCCAGTCCAGGAATCCCCACTATGGGAAAGTAGGCA---GACATATAGCCTCACCATGGAGGCCTGCCTTCAGGTGATATGTCTGATGTTGCTCCCCCACAAA-----CCTCCCTGACTCTGGTCTCAGCTTCCCCACATACAGGAAT---------GACTTGC----------------------------------CTTCAGTGCG------------CCTTGCTTGGG-----------------------------------------------CTGGC-----------------------------TATCATGGTAGGTGAAGCCCTCAGGTGAA---ACTGTGTATCCAAGGGGCTTGGCAAACACCAAAGCCTTTTATACCTACTTGATATATAC-CCCCTGAATGTCACAGCCTAACCACAGCCTGCTATCAGCT-GCCACCATCCCCTGTTAGCACCTCC-----CTACAGACCCAAGCCCCTGAAAGACTGCCAGCCTCGGGGGCTGCCCTTCCC----CACTGTAGCCCCTGTAACATGCCCCACTTTGGGAGAGGCTCAGCCAGTTGCTTCCCCAGGGCCTG--------------------AGGACAGGGCTGCTGAGCA-AAGCAAGATATTTCAGGAGGCTTTCGACACCAAGCTCCCAAGG----GCAGCTAGGAAGGACATCTGCA-GACCCACGATGC-------------------TTCTAGA-CAGGGAGAGACCTTAGGAATCCAGTG---------TGACCAAATATGGCTACATCCTGGAGT--CAATGA-------------GGAGTCAAGAGG-----TCATACT------TGAACC--------TCTGGAGT-----------GCCATCtttaataagctccccaggtgactctgaGGAAGGC-AGTGTGCCGACACAACCTCACTTGGACGCCATTGATCAAGAGCAAGGGGTTGCCTCCTGT-TGCCATAGAACACTTTAGCTCCTTGG-GGTGAGTGGGGAAGGAAGAAGCCTTGACATTGGTGACATTGGTACTCAGGCTCCTACAACTCTCGGTATTGGCATTCT---AGGTCATAGGT---------CATGGAAGCAAAACCAGCCACAGCTTGAGGAGTCT--AACACCA-TGGTCTGGCCATAAATGCCATTCTTGAATCAGGGTGTTTAGA-GCAGGATAGT---gtgacctgccatgggccacagtgttggttaggagtgaggtggagttagaa--cctgaatctcaactccagaaccatctgactcatgttctcactctCTGtctctgtctctttcctccctctctcccttcctctctctctcCTCCAACCTTCCTCTCTATCCCTCCTTCGGGctctctctctttatctctctctctctctctttctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtctttctgtgtttctttctttttcttctctatcatttcctttctctttctcctccctctgtccctcttctctctctcCACTCTTCTGAAAGGACCAAA--GGATGAGATCACTTCT-CATCTGTCTACTTCTCCCACTCTGACCTGCTTTTTGGAAAGG--CTTCTATCACCAGTCAGGTTCCAGGTATCCAGTGCCCACCAACAGGGTTCAGGGAGCCCCA-----------------TGAATCATGG------------------------AGGGAGCCCTGAACCTG-AGCGGCATCTTCTGAGATGCT-----CCTACG--GGCCGCTGGACTTCAGGGATGGAGGAAGGAGAAAGCTAACCCATA-GCGGTGGTTCTCTTCCTAACACA------------CTTTTTCAGGTGACAAGAAA-TCTGTCTATAGGAAGCTTTGGTGCTGAGGACTT--TGTTTTAAATTTTATGATAGACAATCGCATTTCTATTTTCGACATAGCATTGAACTTGCAGATTTGCATGAATTATTAATACCCC-AATGCATGCCTAGTCACAATGTAACTTCAGCTTCAGATCAGGCCTGAGGCTCCTCCTAGG--------GAGAGCAGGGGCCAAGGAAAGGCTGCTGAAGGAAATGGTCA-CTTGTCCTTATCTTCCATTGCCTGACTTGCCACTGGTCCTCATGGGGACTCAGCTG-------------ATAGAATGGTACTCACTACCCCCAGA------CTGCTGGGACACAGGAC---------------AGAGAAGCTTCTGTGAGGTCTGGCCTCTCTGGCCCTTC-----AGGCCACTGGCC------------CCCAAGAATG---------------------CCATAGGCCCCTCCACTTGCCTGGCTATACTGAACCCAATGTGGGCAGGCGTGTGCCAAGAGCCTGGGAGCTTTCTCCCT-----------GAGTCTGAGACCTTGCAGAGCAAAGAGGGTAACTGCAGGTAGGTGGCTTGATGACAGTGGACACTG-GGACACGCAGGAACCAGGAAGTGCTACAGTCAGCC-CCTCTGGAGTTCCCAGGCTGACAATAGAGGCTGGGTGGAATGGGTGCATTCACACATGCTCACATAGACACAGACACTCACAGAGACATGCAAAGGACATGACTGGCAAGAGGAGAAATGGAGCTAGAAGCTGGGAAATGGGGTCTGTGATGGTGGAG--GCCAGAGAGGGCATTTG---AAGCTTAGAGGCTTCAGAGTGTCAGACATTAGGCGTTGGAAAGGCGACT-GTAGAGGTCCGTGGCTGGTCC-TGGGGTTAGGATCACTTCTATAGCACCTTTACCAGTCGCTGCTCAGTGTCCCCACA----ATTGGTGCCACTCTGGGACAACAGCCATTAATGTGAATGCCTGAAACACTGGTGAGGCTG------------------------AGCCC----CCATCTTGGCCCCTTCCTCT-TGATTTTCTGTTTAATAAGGCACTTTTTAAGGTGTAGCTGCTCTTGAGAGTCAGGTCTGACCAGTTGG s bosTau2.chr10 5750024 2774 + 70001009 cacacagatattctgattctgtgggccccgggatctg-tatcttaacgtgggctccaggtgattctgaggtaGCCTC---------------CACCAGTCTAGG--TCTCTTGTCTGGGGAAAGAGGGATGGGATTTATCAAATCAC-----AGGCCTGAATCCAGAC--TTCACATAGTGTTAGCCCTGAAAAAAAAAGCCCTCGATCATTCTAGTCTCTGCTTCCCTAAAT-CAGGGATAAAATCAGgggcttccctggtggaccagtggttaaaactccacacttccacttcagggagggagggtctgatccctggtcgggaaactaagatcccatacaccatgtggcggggccaaaacgaaaaCCAACTGGCATAAAAATGGTCAGCCCCGCGCTTCAGAGCGGCATGTTGGCAGAAG-GCTCAGATGAGGGCAGTGCAGGCCCCAGGTGCCCTGCAAACACTGAAATGCTCT---CCTGCTCATTGTCTATGTCCCTGGATGCCACAGGC-AAGCACAGCCTCCCTTATGCCAGCCTGTTCCCCCTGTCAGTGTCCCCACCCTCCACAATCCCAAGCCCCTCAGAAGCAGCAAGTCACCGAGGCTGACCTTCCCGTTTCAGGGAAGCTC----------------------AGGGACACAGTCGGCTGCCTCCCCTGGGGCCGGGGCTTTGTGCAGCCAGGAAGGGACAGGGCTGTGGAGCAGGAGCAGGATATTTCGGGAGGCTGTGAACGCAAGGTCGCGGCGGGGGAGCAGC-AGGAGGAACGGCCACAGGGCCTGTGACGCAGGCAGATTGGCCAGAGTTCTTTAGAGCAGGGGAAAACCTGGGGGATCATATGGTCCAGCCTTGTCCCAACCTGGCTGCGCACCAGAGTTGCAGTGGATGGGGGTGGGGTGGGGTTaatagagattcccagactccactgtagaccgtcctgggcctgggatctctctctctctctttttttaataagctcccctgatgattctgaagcaGCCGACCCTGTCTTCAGGTCTGCATTTGGAAAAAATCAATCCAGACTATAGGATTTTCTTCTGTGTTTCACAGAACCCGAGAGTTTCTTGGAGGTAAAGGTGGGCGCAAGTAGCCTAATAACTGG-GGCTCTGGGACCCACACACCCCCACATCTCCATTTTAATCTACTAAGAGGTCCTAGGTAAGATTTCAcataaaaacaggacc--tcccagctttaagaggcttgaataccactggtctgttaataccttcctttctcagatgaggcagctgaggcccagagtggctaagtgacctggccaaggccacacagttggagaagagggaggtggagccgcaatgcaggtgtcttgactcctgaa---------------------------------------------------------------------tccaaa------------------------------------------------------------------------------ctcttggtgcccGTGTG-----------------------------------TCTCTAT-----------------------------------------------CTCTTCTGAGGAGAGCGAAGTGGCTCCGGACTCTCCCACACCTGCCCGTTTCTCCCACCCTGGACCACTCTCTGTAAAGGCCCTCTCATCTCCAGCCAACTTCTAGAATCCCATCACTCACAGGCTGGGTCCCCAGAGACCCAGCAGCAGGCAGTGAGGTCAGATCAGGATGCGGTAGGGGGAGAACAGGCCACAGGCAGACCTGTACCTGTAAAGTCCTCTCTAGAGAGACTGGAGACTGATGGAGGCTGCTGA--TTGAAGAGGGCGGCGGGGAGGAAACCAACACAGATAATTTTTTTCCCCTCCCAACACAGTGAGAGGTTTGTTCCTTCA---GACAGGAAACTCTGTCAATAGCAGCCTTTGGATTTAGGAACTTGGTGTTTTTAATTTTATTGTAGACAATTGCATTTCTATTTTTGACAGAGCATTTAACTTGCAGATTTGTATGAATCATTAACACCCCTCATGCACAC--AGTCACAGTGTAAA-GAAGCTGCTCCTGGGGCCTGAGGCCCCTCCTAGGGGAGGGGAGAGGGCTGGGGCCAAGGGGACGGTGCAGGGCAGAGCGGTCCTCCCTTTATTATCCTCCACTGCCTCATTTGCCTGCCAGCCCCACATGGCTTTAGCCACACTCAGAGATCTAAAGAGTACGATTGCTCACACACAGAGCAGGTCCCCAAAGAACCAAGGCTTCATGCAGACCTGGAGAGGAGCTGCCTGGAACCCTGGCCCCCGGGGCCCCTTCCTCAGGACCCCTAGCCAGTAGGGGTATGCCCACAGGTGTATGGGCAACCCGGTGTATGCCCACAGGACACGACTCTTGCCCAGTTGTGGTAAGCCCGTTCCCAGAGGGCCTCTGCAAAGAGCCTAGGTGGCTATTTCCTCTTGATTTCTGGGCTTTGAGACCTTTCAGAG----GAGGAGTCCCAGGTGTGAGGAGTTCACTGTGAGTGAGAAGTGCAGATGGATCGGAGGTAGGA---GATATGATCACCTGCCTTAGGCATTCCCAGTCTGATGGTGGAGGCTGGGT-----------ACATGCATGTGCATGCACACACATATACACTC--------------AGGAAACAACAGGCC---------------CCAAGAGCTGGGAAAGAGAACCAGTCCTCATGGAGGAGCAAACAGAGGTATTTGTAAAATCCTAGAAGC----------------TCAGGTTTGGGAAGTTTTATTCATGGAGCCCCAAGCCTGACCTGTATAGCCTGGATCATTTCCATAGCACCCAAGCCAACCACTGTTCACTTTCCCCTGAGGGCATCCATGCCAC-CCGGGACAGCAGTGATCA-----------TTAGATGCTGGAGAGGCTGCGTTGTGTTATTGGCTTAACCTCAAGTCCTTCACCGTCTTGCCCCCCTCCTTTCTTCTGCTCCTTTTGTCCATGGTCTTCTTTATGTGCAGCTGGTTTCCAGATTAGGACAGGACCATTTGG a score=3148 s mm7.chr9_random 3224305 188 + 9745104 TGGATGAGGGCCCACCTACACGAGT---CTTTAGCTTCAT---CTCTGCAAAGGCCCCATGTCCACATACAACCATATCT-----------------------GTCAGTCTCAAGGAGATAA---AGTC----ACAGCAGGAAAGGAACC-------CACA-----------------------------TGCTGGCCCGCC------TCCTCCAAAGGTCATGCTTCCAGCCAGCAGTAGTTGATCATTTATGTAGCCCTGCACC s bosTau2.chr10 5753153 266 + 70001009 tggactaggagccaccctgatgacctcactttaactttattgcctctccaatggccctgtctccagccacagtcatattctaaggtgctgggagttaggatacgtgaacctgggggacatgattcagttcataataGCAGGAAAGAAACCATAAGATCACAGCCCTCTTTTAGACTGATACTCTCCTATCTGCTCTCTCCCCCATCTCTCCCCAAAAAGCTATTCTTCTAACCAGCAGTGACCGATCGATTATGTGGTTCTCCCCC a score=18526 s mm7.chr9_random 3224798 456 + 9745104 CTCCCCCACATCCCCAGACTGCTGTCCTCCACTTCTGCATACCTACTTCTGCAGTCCTCCTTTCTCTGCTCC--CGAGCCCCTCCTCTCGGCGCCTCAGTGCCTG---------CAGAGGGGAAATCTAAGCTGAAAG-TCTCCCACTTAATTCATTACAATTCAATAACATGATGCGGAAAGATGGCTCTGGTCTGGCAGGCTTTTCCTGACTGAACTAGCTTCTTCGGGGCCGGTGCTTATTGATGCTTAATAACTGTGTGTTGAACAAATTGATTAATTAATTGGAGGATCATCTTCATTCTCCAGGAGAGAAATGATTATCTCTGGCAT----GAGGCTGAAAGGGTGGCAGGAGACAAGACTAGGCTCAGA----CGTTTGATGAAGACTTGAGATTTACACGAACTGTTTTAAAGGTGTA--------CGTACACCACAAGGCTAATCCCGGAGGTGGAGGCAGAGAAAGCAGCCCTC s bosTau2.chr10 5754264 474 + 70001009 CTCACATACACACTCATCTCACCATCCTCGGCTACTGCCT--CTACCACT-CAGTCGTCCAT-CTCTGCCCCTCCCAGCCCCCCTTCTCAGCCCCACACTATCTGACTTATATGTAGGGGAGAAATCTGAGTTAAAAGGCCTACTGCTTAATTCATTACAAGTAAATTGGATGATATTGATAGATGACTCTGGTC-AGCAGGATTTTCCTGACTAAACTAGCTTCCTCGGGGTTGGCAATTATCGGTGCATAATAATTGTGTGTTGAACTAATTGATTAATTAATTATGGGAGAATCCTTGATCTCCATAAGAGAAATGACCATCTCTGGTGTGGGAGAGGCTAGAAGGGCAGCAGGAGACAAAAGTAAGTTTAGATTCCTGTTTGATAAAGACCAAAGAGTCATATGTATAATTTTAAACTTATATACAGTATCTCATACCACAAGGCTACTACTGGAG-----GGAAGggaaaatagtcctc a score=21870 s mm7.chr9_random 3227425 1577 + 9745104 TCATATTTCTcctccttcctgtcttccttctgcccc---------cttctcccttctttacactccccttcccttcctctcaccattacctccttGTGAGT----------CCTCTGCTCTC--------------TAGCTGGGTTTAGGAGAGGCACAGGGGTGAGTGTTTCCCCATGGCTGGTGTTGAGTGGGGGCTCTCCTATATCTGCTCAGCAGATATATCTCCTATATCTGCTCTCCTATATCTGCTCTCCTATATCTGCTCTCCTATATCTGCTCAGCTCTCTTTGTCTTCACGTCC--ATGTGAGAGGATTAACACTACGTCCTCTCCATAGCTTCCTCCAAGGTCTCCCCAAGACTCTAGGAGGACAGGTATCAAATctgg-------------acccccagtttctaacccagtacctgatatgtagcag----tcactaactgtGCCCTGCATAGTTGGGTGCAAGAGCTAGCCTCAGCATACCTAACTGTAGCATG---------------AATACCCAGATCTCC---------TGATTA------------TACTAAGAACTTGGGGTGGCCCCTGGTGCCTCAG---------TGTCCCTTGGAGTATATTACCTCAGTGTGCTCTCCTTGGAGC----CCTCCAAGCCTGTCCTCAATTCTATTTCAGGGAGCAGTGTGTGCCCAGCCCTGCCCTCCAGGGACCTTTGGCCAGAACTGTAGCCAGGACTGTCCCTGCCACCATGGAGGCCAGTGTGACCATGTGACTGGACAATGCCACTGTACAGCTGGATACATGGGGGACAGGTAAGG-TGGCATTAACTCTTGCCTATGATGTTCA-GTCATTCATACCCTTAGCAGCCTTGCAGAGAGAA------------CCACCCCTGGCCACCATTCTGGCTCTTTCCTCAGA------------------TGGCAACTCACCCACAC------------------GTGCATAC-CCCTCCACCAGCCTGGCTGCCC------TGGACTTGCA---------CCAGGGAAGGAGGCGAGCACC------CGTCTTCTCCTCCCGAGTCT-----------------GCGCCAACAA--GGAAGAGCCGAGAGAGAAAAATCAGTGTCCACATTTTGAA---GTCCTTATAGAAGTAGATTTGTATTCAAAAATTGAGTTATCTCTGAAAGATACTGACATCACTTTGTGTGATATGAATGCCTG-------AGAGTACACTGAACAGGGTTCCAGAGAGGCACCATCCTTGAATGAAGCCAACCTGGCAGAGGGAACAAGCAACAGAACACAGACCCTAGAAACTGCCT------TCTGGACACAACTGGGAGACAGAT---GTGGGGCCAGGGCA--TACTGTGGGAGAGGCAGAAGCAA-GGCCCGAGTATCT-ATGCCATGCTGAACTGGAGATGGAGGACCACACTTGTGTCCATGCACCCAGCGCCTGGTCCCCTTCCCCAC-----------CAACCATC--------CAGAGGGGT--------------------CCCTGCCTTTTGCCTGGCACTGTGCAGGTGGATCCAAGTTTCGCCTCTGGTTCTTGAACATTATTGTTACTCTTCTAGACAAAGTGAGAGGAGATACTGTAAGAAGCACagcttagactaagcttagactaagcACTGGAGAAACCAGGACTGTCAATCACACTTCTTCAATGAAAGGAAGTGTGCCTGATCACCTGGCATGCTTGAGTGACCCTTTGCTATTCTGTTAGGAACCAGTCTCTTCCTGAATCCCCCCAATACCC s bosTau2.chr10 5755458 1659 + 70001009 tcctattcctctatctgctagtccatcttccaccgcgtgacatatcttgtcc--tctatggccccctctccccttc--------attttctccttgtaggtttatatgttcctcctgctcccctttactcttctggtagctgggtttgggaaagaagtagagataaatgt----------------------------------atgtctccacacca------------------------ctgtgtttaatcAC--ATctctgctttctttt--ttgctcagcactttct-----catgtaccagtgtgagggcaccta-gttatgttttct---tgtctctctc-------tccccagtaggttggaaggacaggaatcgaatcttacctgtatttttatatccctagagtctagtgcagggtctggtatacaacaggcactcattagatatgtgctgaatgattggatAAGCAAACTGGTCTCAGTCTGCCCCTCTCTAAAGTGTGGCTTTGGAGTCATGGTGTCCAACTTTCTGTGCTTCTGTGATTGGGGAGAAGGTCCCACTAAGGGATAGGGGTGGTCCCTTGGGCTGTAGCAACTGTGCTACTTCTAGAAGAAGGTGGCCTCAGGATTGCATCTCAGAAGCACCACCTCCACAGGTCTTCCCTCCTGTGTTTCAGGGAGCAGTGTGTGCCCAGCCCTGCCCACCGGGGACGTTCGGCCAGAACTGCAGCCAGGACTGTCCTTGCCACCATGGAGGGCAGTGTGACCACGTGACTGGGCAGTGCCACTGCACAGCTGGCTACATGGGAGACAGGTAAGGATGCTGTTGGCTATCATCCTTACTGGTCATGTTACTCATTTTCACAGCAGCCTTGCAGACAACAGGTCAGGTTTACCAACCTTCTGCCAGCTTTCCTGTTTCTTTCTCAGAAAGCATTCTGAGTCCTCCTGCCAATCCATCCTTCCTGGCCCTCAGCCTGCTGAGGGCACCCACCTTCCCCCAGCCCAGTGACCCAAGCCTGGAATTTGCATTGACTCACCTGGGGAAAGAGGTGGGCACCTACTACCACCCTCTACTTGCTACCCTCCTGGAGGGAGGCAGCAGCACCGATAATCAAAGAAGTTGAGTGTGCACTCTCAGTTCACACATTTTGCACTATTCTTTTTAGAAGTAGATTTTTATTCCTGATATGAGTTCTGTCAAAAGGATACTGACATCAGTTTGCATCCTCTGAAGGCCTGTGGCCTAAGAGCAGACTGAACAAGG-------GCGCCAATGTTCTGGAATCAAACTAACCTTGCCAAGTGGATAACCCGTAAAATACATAATGGGAGGGTTACCGGAGTTGTGTGTTTCCCATGGCAAGAGGGATTTCATGATGATAGGGAAGGTGCTCTGGGAGAAGGAGAAATGACAGCCAGGGTGTCTGATGGTGAGTGAATTCAGATTTGGTGGAGGACATTTGTCCACAGAATCCAGGTG---AATCTCCTCCCTCTCAGTCTGAACTACATCTGTCTCTTTGAGCAGAGAGATGGGCAGTAGAAAGGAAACTCTCACACCCCTTGTCTGCTTCTGTG-----GGATCCATGTTTCACCT--GGATTTTG----TTACTCTGCCTCCCCT-----------------------------GCCCAGGTAACATCAGG--------AAGCA-----GGAGTCAGGGCTG--------AATTAACCAATGAGTCCTTCTGGCTCTGACCA----ACATAGTGGGGTTCCTC----CAACTCTCATTGGAGTCAGCCCC-----AAATCCTAGTGATACCC a score=36224 s mm7.chr9_random 3229440 1009 + 9745104 ACTTTATTAGCTCTC---------------AGGGTTCACCGAGGGCAGAAATAATCCCACGTGTCTCGTCTTCGAGTCTCCCCCTGCCCCCCCCCCCAAAATCTCAGAGCAGAGAGACTCTCCAAAACCACAAGCCTCCCAGCTTG-TTTTGCCAGCCTGCCTCGCCTCGCCTCGGGAGAGTTGATGCAGAGCTCTGAGT-GCATTTGGCTTTCCCGCCTCAACAGGCTGCCTGGTGTTTAATATTTTGTAAAATTGCCTCCATTAATTTTGTAGGTGACAGCTGCATTAGCCCACCCCAAATTATCATGAGCATATTAAAGCCAAGTGGGTATAATAATGCGGGTCTCCCCAGATCGGAGGCATCCAGCTCAAATCAAACACGGAATGTAAC-------------------TTGTAATTTAATTGAGCAGTGTATCTGGTTGTTAATGGCGATATTGGACACATTAGATTGATATGTTGGGAAGGAAGGGTGTTTAAGTAGAAAGTTAATCCCTGCTGTGGTTACCCTCCTGTTCCACAGG-CCGATTATTAGTGTGCTTTGTGTAAAATTCATTAGCAGTCTTTGCTTGATCTCTAAATAAATAAGTTGTTTAAATTGTGGCTAAGAAAAAAGGTAAAAAGAGACTGATTATGCAAATGGATTAGGTTATCAATATTTCATTTCTAGATTATTTTTGGGGGGGTGGGTAGATTCAGTGCTCCTTCCTCTGGGGTACAGCCAGGTGGGACACTCTCTTCAGAGGAG--------------------CTGTCTGTCCTGCTGTGCAGGAGTATTGCCATGCAAGTGAGC---AGATGTCTCCTGGTGTGAGTTTCTCTCTCCTGACATCAGAGATCTGAGCCCTTTCCTGCCAAGAG-------CTCAGTGGTCTGTGGAGAAATCTG----GAGGCTGAGCAGGGACTGGCAGT---------TTA--GGCCACGGATCTTCAGC-----CGTTTGTTCTCCCCTTTCCTCCCTCCTCTGAGCTCCCCTTTTTCTCTCTTGCCTGCCACCCACTCTTTCTTCCCCAGCCACCCCTCCCTTTGTTCTTGCCCCAGC s bosTau2.chr10 5757524 1034 + 70001009 ACCTCATCGGCGCTCTCCATTTCCACCACCAAGATGTACCAAATGGAGAAATAACCCTA-ATCCCTCTGGTTGGGA-----CCCAGCCTATGAACCTGAGA---CAGAGCAAAG---CCCCTCAGACCTTAATGTCCTCTGGCAAGCTTTTGCC------CATCAACTCCC----GAAGAATTAAAAAAGAGGGCCCAGTAGCATTTGGGTTTCCCACCTAAACGGGCTGCCTGGTGTTTAATATTTTGTAAAATTGCCTCCATTTATTTTGTAAGTGACAGCTGCATGAACCCACCCCACATCGTTGCAAGCATATTAAAGTTGAGTGGGTATAATAACGCAGGCCTCCCCGGATAGGCAGAATCCAGTGCAAATTAAACATGAAACGTAACGAGGGTTTTGCAGCTCATTTTGTAATTTAATTGAGCAATGTATCTGGTTGTTAATGGTAATATCGGACACATTAGATTGATATGTTGCAAAGGAAGGATGTTTAAGTAGAAAACTAATTCCTGATGTGATTACCCTTCTGTTCCACAGGCCCCGTTATTAGTGTGCTTTGTGTAAAATTCATTAGCAGTTGTTGCTTGATCTCTAAATAAATAAGTTGTTTAAATTGTGGGTAGGA--------AAAAAAAGGCTGATTATGTAAATGGATTAGGTTGTCAATATTTCATTTCCAGATTCTTTTTCTGGGGCTACGGAGTGTCA------CTTTGTAAATATGACATGGGGTGGAGACATGCCCTTCAGAGAAGGGAGCTCACACTCCAGGACTCTCTCTGCTCAATCCTGCCAGAG---------GGGAGGGAGCAGGAGGTGTCTCCAGGCTGGGG--TCTCTTCCCTGAT------GGCCTGAGACAT------CCAGGAGAGGCAACCTGAGTGACTCCCGGGGAAACCTACTGTGAGGC--AGCACGGGCTGGCAGTGTCCAATTCTTACCTGCACTGTGTCCTCTGCGCCTGCCTCGGTTTCCATCCTCACCCCTTCCACCGTATtcccctcttcct-tcctctcttctacctcccgtgtcttctccacgcatccccttctctcttccctcttccgc a score=3148 s mm7.chr9_random 3231645 261 + 9745104 ATTAAACTGCTTCTAATTCATCAAGTTCACAAGTCCATT----CCATTTCAGAATTCTTTTCTCTGAGCCTTCTCATGCCTGAAACTAAGGCGAGAGGGACATATCTGCTGTGTTTTAAGA---ACAGAAACAAATTTTTAATAAGAACAGAGAGATAAATCAGCAGTTGAGAAATTTATTTAAGAGTACCAATAAATAATGGTTTCCTGGCAACCTTTCTGAATCATAATATACCTTTTTTAAAAAAATTAATTACATGCATGGTGA s bosTau2.chr10 5758783 226 + 70001009 ATTAAAGCATTTGTAATTCCGTAAGTCCAC---TCCATTGTTAACATTTTGGAACTCTTCCCTTTGAGGCTTTTCATGC------------CAAAAGG---------GCTCTGTTAGGAGAACTACAGAAA-ACAGTATTAACAAGAGTaataataagaactaacacc------gcttatt---gagcgcttaccattcatgg------ggc-acctttctaaatgtttatacgcgttatctcatttaatc-ctcaaacacatggtga a score=50414 s mm7.chr9_random 3233046 2760 + 9745104 CAACAGAAAAAGA----AAGTTTTACATCA-TGACACCCGATAATAGGAGCTCA-TCCTGGCTGCTGAGGAGACCTGG--------GGTGAGGTGCCCAGGGATATAGGGG-----------------AGGAGACT-GGGAGGGAGGGAACAGGCCAGGCATTCCAAGTGAGGAGGGGT--CTATGCAGATGCAG---CAAATAGCCCAGCAAGGGCTCCGCCCACGG---------CTC-CCTCCTTCTCTGCTCTCCCACAGGTGTCAAGAAGAATGTCCCTTTGGAACGTTCGGTTTCCTGTGCTCTCAACGCTGTGACTGCCACAATGGAGGTCAATGTTCACCAGCCACAGGGGCCTGTGAGTGTGAGCCTGGCTACAAGGGCCCTAGCTGCCAGGAGCGGCTATGCCCTGAGGGCCTGCATGGCCCAGGCTGCACCTTGCCCTGCCCCTGTGACACCGAGAACACTATCAGGTACGAGCT----ATGGACAGGTAAGCTTGAGG-CAGGGGCTAGGTGGGCCCCTGATGAAGA-AAGGCTTCCGGGGC-TGGGGCTCTACCTCCAGGGTGGCCAGCTAGCCAACTGGAAGAAGGAGCTGGGCCTTTGGGG--------CTTTGATCTCTCTAAT--AAAAAGTGAAAACTAATGCCACC---------------AGACCTTAGGTCACCTGCCCCCTGTTCTTCATGTTCAGCT-----------ACTGGGCTTCT-----------CAAGCCTCACACATGAGGAAGGGAACAGCCTAGTGA--CCCGAAGAGGCAGGGGACTAGGATTGGAT----------AGTTCTGGGG--ACTGAGA-------TGAGGTG--ATAGGGCTCATGGTATGGTGGCTGGTGAGC---------------------CATCTTGGAGAGTCGTCT-----TCACAATGAAC--------------ATCTAAGCAG-------AGGCTGGAGCCACAGAA----------------------------------AGCCCATCTGGGAC---CAAAGA-----------GGCCCTGACC-TGGTAGGAGAGGATGAAGGAAAGGGATCAG---------------------------------------AATCTGTGCCCATGAAAGCATGGGGACA--------GTAGCTAGTCTTACTCCTGCTTCCAGAGCCGTCTAGGCCTGAGAAACAGAAGAGCAAAAGAT-CTCTG-----CCTCCTCCATCCCTTTTC-CTTTCTTCTTACCACTCCAGCT-GCCTTGCTCTCTGTTAGGAAGCAGGGCTCTC-TGCCCCAGAGT----------------------------------TGCCT-CACCGCCCTCTGTCTGACTGCCTGTTTCTGTTATCAGGGTAGAAGG-GGTGGGACATCCCTTCTCCTT----GCCTAT-GAATGGCCCA--GGAAGACAAGCTGCCC-AGGCAGTGAATGCTGAGCAGAT-------GGCCAGGCAGAGAATGCCTCTG--------------CTCTGAGA--------------------CTCCTCTTCACCTCAGTGTTTGGCTTCT-CACAAGTCACCCTGGA-CCTCCTGTCACTGCAAGCAGGGT-ATCTTGGCATGTAT--CAGCTTAGATAGA------CATGACTCCTTGGT-----------GGTATCTCAAG-----------------------------------GACTATACAGAGAGGG-CTTAGAGCCAAGATAGCTGGTCTGTGCATGACTTGAGTGTC--------------------------------CCCACAGGGCAGGGCTAGGTTACAAGAAGGAAGCCCAGGTA---------TCCTTAGGATCT-----------------------------------------------------------------------------CTCACTGG----TATTACGCACTTGCTGGCATATTT-TTCCAATACCAGGCACCTCCAGTTGTGTCTCATAGCCCTGCTTGATGTCCTAATGATCAAAAATTCCATCAGCCAGAGCAT----GACACACCATTAAGTGTATAATATACCTAGCATCAGAGGT-------TGAGAGAGTTAAAGTA-------------GAAATATATGTACCTGGCTCTGCTGAGTTCCAATGTATGTCCCAGTAATTGTGACCTGAGA-TATGTGCATAAAAGGTCACAAGAGAGCACCATGTGGGGcaggaagggcatcctagaagaggtggccttttgcct-gaactgaaggacagggtgagagATCTAAGGGTCCCAA----------------------GTATGGGAACGAGA-AACTGGTTCA-CCTACTACATGGA-----AGACAGCATGGGGACACTCCATCC--------------------------------TTGCTGGGAAGCCAA----------------GGACAGGAAGCAAGGAGGCTCCTGAGGTCCCCATTCAGGAAGAGTCTCCACCACAGAGATCCACTCAAGCCCCAAATTAAAAGGCCATTGTTTCCCTCCC-TTCCTCGGCAACCGCGCACTGCATAATTTATCTTTCTTCTGAAGGAGTCCTCCATGCATTATTAATCTGGAAGGACTCCCTCTTCTCTGTCGCTAATCTCAGCCCATCCAATATTAATGATTATTTGCTTTATCGTCTTTAACGTGTGTCACGTTTTAAGGAACGGGGAGGCAAGCGCCATCCTTAGGCGTGGATCCTTGGATGGTGCCTGCCCAACCAGCTCT--GGGCAG--TGCTCCAAAGC------ACTTCCTCCTT--------GGTGACTGCCTTGCC----CCAATCCTGGACCCTCATGGGCACCAGCAGCCTGCCTCTAACCACTGTCTCGGCCTTCAGTGACAGGCATGGCTGAGTTTATCTTAAGCAGTGCATCCTCCTA-GATCGTTCTGCCCCACTTGCTTTTTAAATATT---CCCCGTTCTCCTGGTGTGCCAGCCTTATGACTGAGCCCCTGACAC------ATGTGCTGCTCAGTCTG----------TATCAGGCAACCCAC---------------CTGG------TTTGGTCATACAGAACAgtcttgtgctctatagaccattcagcagggtccctggctcccacccatcagatgcacag---------ctcactcccaagttctgacacccaaagatgattccagtcagtgccaaatgtccAGGTAGGATAGAGAAAGCAAGA--TGTCTGAGGT-GAGTACCTCTGGTCTAACTGAA-----TTCTTGCAGCTCTTGGTGTTGTTT------------AGAGCAGGCCTATTCCTTTGTGTAGACATAGCTTAGCCTTTTTCCCCCAGTAAGCTTTGAGTGGTTATGATAGAGCCTTCTCTTGGGATATAAAGAAAGTAAAG s bosTau2.chr10 5759719 3363 + 70001009 caaaaaaaAAATACACAAAGCCTACAATCAGTGAGATATGATAGTATGAACTCACTCCTGGGGACTGAGGGGAACTGGCCTGGAGAGGGGAACGGCCTAGGATGGTGAAAGCACAGAACCCTTCCTGCAGGAGGCAAGGGAGGACGGGAGGAGGCCA-----------TGAGGAAGGGCAGCCAGCCAGGCCCAGGCCCAGAGGATCTGGAAAGG----CACGTAAGGGGGCATGGACTCACCACATACTCTGTTGTCCTGCAGGTGCCAGGAGGAATGCCCCTTGGGGACCTTCGGCTTCCAATGCTCCCAGCGCTGTGACTGCCACAATGGAGGTCAGTGTTCACCCACGTCCGGCGCCTGCGAGTGTGAACCTGGCTACAAAGGCCCCCGCTGCCAGGAGCGGCTGTGCCCTGAGGGCCTGCACGGCCCAGGCTGCAGCTTGCCCTGCCCCTGCGATGCTGACAACACCATTAGGTATGACGTGAGCGGGGACAGGTGAGCCTGGGGACAGGGACTGGGGAGGGCCCTGGTGGAGAGGGGGCTCTCAGAGCACGAGCCACCACCTCCTCCTGGGTTATCTGGGCAGGCAG-TGACAGAGCTGGGACCTCAGCAATCACCTTCACTGGCCAGTCTGATCAAAGAAGGGAAAGCCACGGTCACTCAGGCAGTCAAGATGAGGCCTGAGGTCACCTG--CTCTGTCCACCACCCCCAGTTGCCAACACTGAACCTGGCTGCTGGCATTGAAAATGGGCCGCACACAGGAGCAAGAGGGT-GCCTGGTGACCCCCAGGGAAGCAGGG---TGGGAATGGGTGCAGCCATGCAATCCTGGGGGCGCTGAGGCTGACCTTGGGGTACCACAGGCCTCAGGGGCATTTTCCTGGAAAACATTTCCTCTCCACACAGTCCGCATCTAACCAAGTCGTCTCCCAACCCCAAGGGGCCCAGAGACCAAACTACCACGGCAGGAGCACAGGGCTTTAGCCATAGAGGGTCAGTGTTAGCAGAGACCTTAAAAACCAGGATGGCTCACCTGAGGCCTGCAGGGAGTGTCCCCTCTGGCCCTGGCTAGGGTAGAAGAGCAGGAGGGACAGAGGCCAGGCCCGCATCAGGGTCTTGGCTTGGGGCCAGCCTTGCCTTGCTCTCTGCCCTTCAGGGCTCGGGGACACCTGAACTGATGTTGGCCCCACCCCTGCTTCCTG----------------GAAGTGGAGAAGCCAGAGCTGCCCTGGGCCACCTCCCCCAGCTCCCCTCACTTCCCGCTTCCTGCACCAGTTGGCACCGCCCTCTGGTAATAGATGAGGCTGTCAGGCCCCAGATTAAAGCTTCAGATGAGGCTGTTGGGCCCAGATAAATGCTTCCACAGCCTTTTATGTGGTCGACTCT---TATTAGAATGATGCAGGGTGAGGGGACTCTCCTTCTCCCCTCGGGCCTGCAGGACAGCTCAGGGGAGGACTAGCTGCCCTGGGCCATGGGTGTT--GCTGATGTTTTCAGGCCAGACAGACAG-GCCTCTGCCTTATAGCCTTGTCTCTGGGACAGCTAGGACTTAGCCTCAGCTCCTCCTCACTTCCAGCTTTTGCTTCTCCACACATCGCCCAGGAGCCTCTGGTCACTGTAAGCAGAGTCATCTTCGCAAGTGTTACAGCTTAGACAGAATCTGTCCTCAGTCCTTAGTTCCTAGAGCTGAGTGGCTCAGGCAGTGCTGTCTGCAATGGCAGAAAGTTGGAAAGGAAACCATTAACAGGGGGCCTTGGAGCCAATGGAGCTGACCTATATATGACTTAAGCATTGAGTCACTTATTCATTCAACAAACACTGAGAGCCTGCAGGGCC-GACCATGAGAAAAGAAGTACCCCTTAACACCTGTCCAGCCCTCGGGAACTTGAGTCTGGAACACATACccctcctccccaccccgacctccgcccccctccccaccccccccacacacacacACACGCGCGCGGGCACACATTAAGCATCTTCTACCGTATTTCTTCAAATACAAGACACCACCAGTAGTG-----AGGCTCTGCTT--TATCGT-------ATATACTGCTACAACTGAACTATTGACTGCATACCATTGACTGCATAGCACAC---ACATCAGAGCTATGAAAATGAGGGGCAAAGAGCATCTTAGAAGCAACGAAATATATCTGGCTGGCCCTGTTGTGTCT-----TGTGCTCGAGTAACTGTGACCAGGGGCTCTGTACAGAAAG----------------CATACTGgtcaggaaagtcttcctggaggaggtggcctctgggctaggtctggagggcacagtgagagctcccaggctCTAAACACAGAGTTTCCACATGGCTGGTTGGGGGCACGGGACAGCTGCCTCAGACTATTCCATGGGTGGATGGGCAGCACCAGGA-ACCCCAGCCGCCACCCCCCCTCACCCCCCAGCAAGCCTGCTCTGCAGGGAAGCCAAGGGAGGTCTGTGTCAGGGACAGGAAGCAAGACAGTCGCTGAGAT-CCAGTGCAGGAATAGTCCCTGCCTTGGAGATCCAACCAACCCCCAAATGAAAGAGCTATTGTTTTCTTCCTGTGCCTGAGCAAGCGTGCCCAGCATAATTTACCCCTCCTCTGAAGGAGTCCTCAATGCATTATTAATTTGGAAGGACTCCCTCTTCTCCGTCGCTAATCTCAGCCCATTCAATATTGATGATTATTTGCTTTACTCTCTTTAACACGTGTCACATTTCAGGGGTTGGG--AGCAGTAGCACTTCTTAGGCATGGGGGCTCCGAGGGCACCTGGCAGCCAAGCCCCCAGGCCAGGTTCCTCCGGGTCTACTTGACCACCTCCTTTCGGGAGCGGTGTCAGCATGGGcttgtccacctctgcagcctca---gcact-gcacgatgcct---ggcacagagcggaccttcaggaaaaagaatcactgaatTCATCTTCAACAGCCCATTCCTCTAGGGTGGTTCTGCCCAA---GCTCT---AATGTTTCACCACTTTTTCCTGGCTCACTGCCCCAGTGACTGAGCCCCCAGCACCCACCAAGTTTTTATTTGGTCTAACTCGAAAtttctcagccttgccactgtggatgtttggggctggataattctttgccatggacggctgtcccgtgcattgcaggatgtttagcagcatccctggtctctgtccactagatgc-cagaagcacgaccccggccccgagttctgacaa------------------------------ccTGGATGGGTAGGGAGAGGTAGGATTGCCCAAGGTGGAGAACCTCCGATCTCACTCAACCTCTCTCTCGCTGCACTTGGC-TTGTTCTCAGGGACACAGAGAACAGCTGTCTTCCTCTGTGTGCACACAGGTCACTCCTCTCTTCTCA-TGAGCCTTGGTC--CCATTCTAGAGCCTTCTCTTGGGAGCTAAGAAAAGCAGAG a score=3243 s mm7.chr9_random 3236792 78 + 9745104 TCTATGATTCC-AATCTTAAGGCAGTTAAGCTGCAGGTACTGAGTTGGGGTTTG---TCCCTCCATCCTGGCCTCAGATCTA s bosTau2.chr10 5763089 79 + 70001009 TCTAGGACTCCTACTCCTAAGGCAGTTGAGCTGCAGGTTTTGG---TGGGTCTGGGACCCCTGGATCCTGGCCTTAGAACTA a score=17853 s mm7.chr9_random 3237899 678 + 9745104 TCTTGTGGTCTTTGGAAGCAGAATG---------------GAAGGGCA---------GTCATTAGAAGCCATGCCTCATTTGTCCCTAAACTTGTGTAGCACTTGAGATAAATGGTGGCTTCCA------GTCTCTGGCATCCTTCTGAG-GAGATAGGG--CTCTAAGCCC--AACCCAAAAGAGCCCTGTTCCCCTGCCCACCCACAGCCTCTCCCTGCTCCTT-CCCCTTTGGCTAG-CCGCTGCAGAGAAGTTATG----GTTGCCCTGGGAAAGAGCA---GGCTGGTGAGCTT----------TAGTTTCCTCCGTGGACTCCGTGATAACACA---AAAGAGGCCACTCTCCTTCATAGATCATTCACCTTGAGGAC---AGTGTCTGGGTGTCAGGCCTCTTAAATGTTCCCTCCGAAATTAGATTGTCATAGATGAATTCCAGGAGCCACGATGGCAGATTACCTTTGAAAGATTTGATTTAGCCAGCAGATGCCACAGAGATAGAAATCT-----CATCAGGGCAAAAGAAAGGCAGAAAAACCCACCCCTCGAAGCCACTGCTGCATTGTGCAGCTTTCGGCTCCTGTTAGCTAGTGATTAATCTGTGTCTGGGGAAAAGGAAGAAAGGGGCAAACCTGATAACAGAGGAGGCAGCCTGTGCATCAGTGATGGAGACTTTGGTCCAAGCCTCCCCTGGCACTGCCTGAAAACAGCCAGGTCACCCAGGGGAA s bosTau2.chr10 5763267 722 + 70001009 TTTTGTGGTCTTTGCAAGCGAAGCTTCCACTCAGCTCCCCAAAAGACACAGTGTGGGGTCCTCAGCAGCCTTGCCTTGTTGCCCCCCTGGCTTGTGCAAGACCCCCACCAA--GACAGCTTGCAAGGAAAGCCCTGAGCATCTTTCTTAGAGAAACAAAGACCTCCCAACCCTTGACCAAAGAAAACTCT---CCTCAGCTCGCCC-CAGCCTCTTTCTGCTCTGTGCCCCTCTGGAGAGGACGCTTCAAAGAGGTCGAGCCCCAGTGCCCTGGGAAAGAAAAAGTGGCCAGAGAAATTCCCCAATGCTTCATTCCCTTTATAAGCGCTTTG-TAGCACACACAAAGCAGCCTCCCTCCTTCATCAAGGAATAACCTTGGGAAAGCGAGCGCCCGTGTGTCAGCCCTTGTCCATGTCCCCTCCACAATTGGATTGTCATAGACGAATTCCAGCGGCCATGGTCGTGGATTACCTGTGAAAGATTTGATTTAGCCAACAGATGCAGCATTGATAGAAATCTCAGAGCAGCCAGGAGAGGAAAAGGCAGAAAATTCCACCCTGAAAAG--ATTTCTGTATTGTTCAGCTTT-GACTCCTATTAACTTGTGATTAATCTA----TGGGGGAAATGGAGAAAGGGGGGGGTGGGGTACTGTGCAAGTGAACC--AGCATCAGTGTTTGTGACTTT-GCCTGAGCCGAACC-AGCGTCGTTTG---CCCGCCATGTGACCCAGGGGAA a score=32669 s mm7.chr9_random 3238975 750 + 9745104 ctggctttaaaggtgtgct--cacccacttatccgggtgagcttGGGTAGGtctccgaacctctgggtgccacctgtaaagtggagattcacattcctacttcacaggtttg-tggaagataagaaatgtatgtgtgaggtgcctggtactttcatagcctggccacatattaTTtattattattcaaattgcttccattttccactgttataaataatgctccagggaacatctctgtgtataaatcttcttccacaatcacagctatttccttaggatagattcttagaaatggaattacaaggccggggtatctgcatatttttaggtctcctgatatgtaacctcagattgtttt---GAAACCTTTACCAGCATTTGAAAAGCCCGTCCATGT----------------------------------TTTGATAGAGAGAAGGTGATAGCCAGTTGTT---TTGACT-GGATGATTAATGAGAAGAAACATTTTCTGAAGTGATTGTTAGCTACTGGTGCTTATTATTCCAGAATCGTCTTCTCTGGTCCACCCCCTCATTTTCAACAAGAACACCATGGCCCCCCAGAAGAGA----GGCTAGCTGGGCTGCTCACGATTAGTCTGTTCATTAatttgttcgttttaagcacatcattaggtcagcatttcccctgtgcggagaaccccactgggccctg-----------agaggtgacaa-gacggaca-----aggctctcccccagggagctgaaacctagtgggtggacagaaaacaagcaagtcaacagaCAGAGAATAATTA s bosTau2.chr10 5765253 803 + 70001009 ctgggtttgaattccagctgccactgagttatctttgtgaccttgggccggtcatataacctccaagtggcatctgaaaattggaggctctactgcctaactcccaggcttacttgaagaccagaaatataggtgtaaagtgcctggTGTTTTAATAGCCTAGTCACATTTTATTtattattatttaaattacttcaattttccactgttataaataatgcttcggggaacatctccgtgcataaatctttctccacaactgtgatcatttcctgaggatagattcttagaaatggaattacaagaccaaagggtctgaatatctttaggactcctgatacataaccccaaattgttttctagaaacctttaccaGCATT---GAGTACTGTCCATTTAAAATAATAATAATGAAGAAAGTAACTTTACCTTTTCAATAGAGAAAACATGATATCCAGTTGTTGTTTTGACTTGAACAATTAATGAAACTAAACATTTTCCAAAATGATTTTTATCTACTTGTACTTACCATTCAGGAACTGTCTGCTCCTgtcca-tccctcattttccatgagaaaatcagag-ctcccagaggagaattggcttggctgggcttcacgcaattagtttgtTCattaattcatttgccaaatacatatta-------agtatcttccccgtgccagggacactgctggccacgggggtacgatacagatgtgaaagcaacagacacccgcacccccaccaccatggagctgccacctggtggggagacagatgataaacaagtcaacagagagaaaagaatta a score=17984 s mm7.chr9_random 3240471 575 + 9745104 GTGGGCAAAGGAAGGGACACAGTTGCA---------AGCCTGTCCTCTTCTTCCTTCTGTCCTCTATTCAGCTGCCATCCAGTTACTGGAGCTTGTACCTGCCAACCAGGCTGGTCTGGCCACTACTGCAATGAGTCCTGCCCCGCCGGCTACTATGGCAACGGTTGCCAGCTACCCTGCACCTGCCAGAACGGTGCTGACTGCCACAGTATCACCGGGAGCTGCACTTGTGCTCCAGGCTTCATGGTAAGTCAGGATGGACCTCTC----TCTCCCAGCCTCCCTGCTCCCC------------AGGGAGCCAGCGACAATCTAGAGTATGACCCTCTAACCAGGAACGAGGGGTAGGACTCTCTTTCTATGTCACCTTCAGGCATAGTCTGTGACT-GAGAACCCTTGAAGATGTTCT---------------CTGAGGTTTACAGCTGCAAGAGTGGCTGCAAAAGGCCACTGTTAGTCTGTTACTGTCCCTGACTCTGAAAGTGTCTTCCTCTCTGTCCAGTTCTACCCTACCCTCTATGCACACAGTAGTTTTCACGGCATCATTACCCCAGCTCACATAAGCAGTTTGTAGTCTCCTTTTGAttgtttgt s bosTau2.chr10 5767688 529 + 70001009 GTGGGCAGAGGGTGGGACATGGCCGCATTCCTGACCAGACTGTCCTCT-CATCCTTCTCTCATCTATTCAGCTGCCACCCCGTGACTGGAGCTTGCACCTGCCAGCCAGGGTGGTCTGGCTACCACTGCAATGAGTCCTGCCCTGTTGGCTACTATGGTGATGGCTGCCAGCTGCCTTGCACCTGTCAGAACGGTGCCGACTGCCACAGCATCACTGGGAGCTGCACTTGTGCCCCAGGCTTCATGGTAAGATGGGAGGGGGCTCCCATGGCCTCTCTGCCTACCCCCGCCCCCACAGAGGAGGAGAGGGGCCAGAATCAG---GGAGTGCAGCCCTGTGCCCAGGGATGAAGAAT--GAGTGTCTGCGTGAGCCACTT------GGAGTCTATGACCAGAGAGCTGCCAAGGCTGTTCTCCAAGGCCAGTCCTGCTGAGGTTTGTAACTACAAAATGTAATGGAAG----------------------------------GAAGGTGTCTT--------TCCATTGTCTCCTCACCCTGGA-ACAC-CAGTTGTCTTC-------------------------------TTTGTACCCAGCTCCTGTCTGTCCAT a score=23785 s mm7.chr9_random 3241424 839 + 9745104 GGCTGCCTAGAGGAGCAGGAACTGATAGATGCCCAGTTTCCCCAGCCCTCCCCTTCCTGCACAATATTAGTTAGGATTTTCCCCATGTTCACAGCCAGTGTTGCAGCGAGCATCTTCTTACAAGCAGCTCCCCACTCCACCGTCCCATTGAATTATTTCCTCCGGGTgaattccca-ggtcagcgggcacaatatattcacggcttttgatggatgttgccagatcactttcccaaagggttatataaatctatgctgtcttgggtcgtatatgcatgtgccttgttcagaacaatttttttcttgccttttt----tttccagtcttgctaattatataggtagagaatggctcctaaatgttgctctcatttgcatg--tctgattactaggtagagc-gaacgtttcccttacgtgtttgttca--gtttgtatttccTCATCAATCATGCTG-GATTTACAAGGTTTGATTTGGGGGCAGGGGCATTGACACTG-------------------GGATGGGATATGCTCAGCTGGTCGGAAGAGCCTCCCACACTT-GGGCATCCTCATGGG-GCAATTCCCATTGTGCTTTGAGAAGT-GTTTTTGGAGTTGAAA------CCTGTGG--------CCAGGTCACACATGCcctggttgtcctacctaccaattgtgtgaccttggac-----------ccagtctctggatttggtttcttcctctacgaagtggg-cactcaccttacaaggttgtttacaggtttagaaaagGGATTTCTAAAGCCACT-------------------------------------CTAGATAGGGGCCTTGGTAAATTACAGGTTCGGATCCAGCATGTCTGTGGTATGGTGAAGCTTTAGGTATCTGATAGGTTCTCACAGGATGTGGATGTTGCT s bosTau2.chr10 5768341 900 + 70001009 ggttgcataacacagcaggagttgatggacccccacgatcctcagctattcctttagtgctgaata----ctgagttgtttccaaagttcacaacacatg-tgcagtgagcatcttcctacaaa-ggcttttc------ccctcctgttgaattagttccttagggtgacttcccagggtcagtgggcataatatatttacggctcttgatggatgttgccatattattctctc-aagggttatataaatctacagtgccaccagtcgtgtatgcatgtacct--atcaaaacagctctgctgacgttcttttcttgttttaatttttgctaattatatagctagaaaatggctcctcaatattgctctaatttgcatttctctgattactagggagagtaaaaccttttccctgcttgtttgtttactatttgtatttcctcATGAATTATGCTGCTCTTTTTGAAGTTTGATTC-----CAGGGAGCTTGACATTGCAAGCAGAATCCTGTTCAAAGGTGGTGCATGCCCAG-TGAATGTGAGAACC-CATACATTCAGGGGACCCCCGTGGTCATAATT----TTATGCTATAGAAAGTGGTTTgtgtagtccaaagtcaggcctttggaatgagcccagggtccca----tcttggctgtcctactcaccaaatgtgtgacccagggccagcgagttaacctctctcagga-tcggtttcctgacctgtggaatgggacacctgccttgcaatgttgctgttagATATAGAAACGGGCTATATGGAGTACCTTCCCTCGGtgcttcttagactttagtgaactcagaaaccagccgtggaccttgttaag-tgtaggttctgatgcagtagacctgaggcctatt---gttctgcatttctaacatgctcccaggagatgacagtgctgct a score=14514 s mm7.chr9_random 3244641 535 + 9745104 GCCCCCCAGCCAGGAATCCACTAGTCTGAAAGCTAGACTGCTGCCTC--------CCATCCAGAATGTAAATGGCTTCTCGTCCTTGAGCTGTGGGTGGGGGGCTTGGTAATCA----GATCATACACAGCCTGTCACCTGTGTCACAGTCCTGCCTACCTGGCTCTTTAAGCTAAAACAGATTGTGAGC-AGGCTGTCCTGCT-----------------------------------CAGCCTCATTATGTACCTGGAGACTTTCCTT-GGGGCCTGGT--GTTGCTGGACAGGGGCTGTTGGAGGTGATTACAAAGCATTCA-TTGTTCTCAATGA-CTTGACTCATTCCCAGGAGCACCAGGCTCC---AGCGGGGATGCCATTATTCCTGCCTTACCCCAGCTTCTGAATGA-TGTGATTTCCTGCAATTAGCCAGCT-TGGTAATATGGGGGATGGGCCATC----AATCAGCAGAGCAGGCTCAGCCCAGGCTCCCCC-AAAGCATCCCACAGTTAGTAATAATTAGCAGTGACTTTATGTGTTTGTTGATTTGTGA--CTACATACCTGCCTGTTTGC-TGAAAGATTTCACA s bosTau2.chr10 5770531 575 + 70001009 GCCCCCAGGTCAGGG-CCCAGCAGTTTGGAGGCCAGGCTACTGTCTCTATTGCTTCCATCTTGGATTAAAATAACTTCCTGTCCTTGAACTTTGGG----AGACTTGACACTTGTAGGAATCATCT--------CCACATG-----AAGTCCTACCTGCTTGGGGCTCAGGGCTGAGACAGACTGTGAGCCAAGCAGTTCTGCTGAGACCCTATGGATTTCCATCCATCTCCTCCTGTCCAGCCTCACT--GTACCTGCAAAGGCTCTTCCAGGGCCCGGTCAGGGGATGAGCAGGAACTGCTTGAGGTGATTATAAGATAGTCAGTTGCTCTCACCCAGCATGACTCATTCCTGCACACACCAGGTTCCCAGGGTGGGGAAACCAAACTGTTGCCCTCACCTCAGCTTTGGAATGAATCCAGTTTCCTGCAATTAGTCAGCTGTGGTCA------GGGTTGGGCATCGGGCAATTAGTTCAGCAGACTTGGCTGAGACCCTCCCTAAAACATCCCACAGTCAATGATAATTAGCAATGCCTTTATTTGATGTTTGGTTTGTGAATTTATGCACCTGCCTTTTTTCTTGAAAGAGTTttca a score=26299 s mm7.chr9_random 3245664 2034 + 9745104 TGTTGGGTTTGAGTAGCCAGTGTGGTAATGGATgcatgatagacca-----------ggactctatcaactgagctatagccctaaccccCTTCCAAGGGCCTTTAGAAGGATGCGACAGCAACTTTATGCAAGCTAACCCTATGAGGGCTG------------GGCTGGTGCTGA---TGAGGCG------GTTTAGAACTGTCGCTGGGCATTCAGGGACTTGAC------AGCCAGGTAGTCTCCACCCCGTGGGGCCCTGGGGATGCAGAATAGCAATGGCTCTGCTTGGTGTGTTGACGATGATGACCCTC---CTGTTTGTCCCTTCATTCCTAAGCCCTGG-TGTTTATGATGCCAAGGACTTGGGGTGTGGCAAGGCTCATCAGACACCCAGCCAGCCATCAAAGACCTTGT--CTGATCGTAATCACATCCAGCCTAGTGGAGAGCACTcattgtgttcttgttgcatgcatcatttggtttatgtctcatgagagccctatagatgtacacttccactttcctcagcttgcaaatgagctgaagtttaaacagggagaggaacttggccaggcttagaaagcc-acagtgacaggaaccaCTTTA-----TGTACAAAAGGCAATGAGCTTTGATAGATAAGACACTCCAGAACAACACAGACTGGAGTTCAAACCCCAGTTCTCCACTGCCTACATTGCTTAT-GGTGAGTCCTGTGTCATGCTCAAGCCTGCATGTCCTTAACTGT--GACAAAGGGTTTGTTGTAAGAGTAGGGAGCTTCCTATAGAAG--TTATAGTTCAGCACCTGAACC-CAATAGCTCCCTGCTAA--GATGCTAAGCTACATGGGCA--GAGA------GTTTTTCTCAAGTCCAGCACACATGTGACCCCCAGAGGG---TATCAGGGTGAGCTGTACCAAGGCACCCCAGGTG-AGTGGACTCATGAGCACACACCCCTGCTGCTCTAGGCAGGCTTACTCCAGCACCCTTGGCCCATTCTGACTGGTC--CTTCAGGATGTCATGTGAGATG-----CCACTGTCATCAGCTGAGAGACAGAGGTGAGGATGGGGGCAGAAGAAAAGTTT---TTTTGTGTGTGTTAGCTTAGCCTTGGCAAAAGGACCACCCAGGACATCCATTGATGAAGGGCACACGGTCTTCCCTGTGCGGAGAAAGTGC--TGGGCTAGGATGCAAGAAGCAA-GTTCATAGTATTGGCTCTGCTTATGTTTTAGG-TTCTGAATCTCCTTTGTAAAACAGGAATGAAATTTTCTGCC---CCAAAAC-----TGTGGGCACAAG----------------------GATTGGGTGGAACAGCGTCTCAGCACCTTGGACAGCACCACACATCTC-------------AGCTGGCTGCTCTTCCAAATAGCCTGGGGGTGAGGCCAGGGCAGTGGGGAG------------------AATGTCTTGTTAAAGTCCTGGGGTACTTGTAGCCCTGTCCTGACAGCATCTCTGAGAGAAGGAGAGGACCTGTCTTCCCTAGTACCCTGGCTAAAGAAATAGCTGAACCGTGGTGGGggaggggagaggagaggagaggagaggCCGGCCATAGGAACCATTCACCCTCCTGCAGGCTGGGTG-CATTTTACAGGTCCCTGTGACTTCTCAATGCC-ACCAAAGGAAATTTACACCTCTATCTCTTGTTACTC------------------TCCAGCCTCATTTCATCTGCT------------------CTGTGACCACACATAACTCACTTTGCCCCAAAC--------------------CTGTCTCTCCC--CTCTTCA------------TTGCTGCAGCCTCGTTTTTGTTGT----------GTCTATGAACATCCAGTCCAGCTCCTTAGA--------------TGACCTCAC---------TTCCATAGACAGTCTTCTCTGTCAGATT--------CACTTCTTATACATACAAAGCCCATGGCTCTTGCTTAGGCTGCCTCCCTGAGAACAAGGACCTGTCTCCC-CTGGCCCCATACC-TCTTAGCCACCATCACCTACCATCCCTGCCACATGGACAGCTTGCTTGGTGAAGTCTCTTTGGTAAATGAAATTCTTGGGAATAGC-----AGGACCATTAATGTAGATGATCCCAGACTAACATCTATAGGAAGA--------GGAATTT---GGGCTGCTTGCCAGTGAGGCTAGGACTTGAATCTTTGCCCATCCCCACGAGCCTCTCTGAG s bosTau2.chr10 5774941 2172 + 70001009 tattgggtgtgagtagccagtgtggcaatgggtgtg----aggcCATATCCTCAGCTGTCCTCTCCCACCAGAGCT----------CTTCTTGCCAAGGG--------AGAATGTTGGAATATGTTTGTGAAGACAGAGTCTCTGAGGGCTGAGAATGGCCCCAGGCTTATCATAAACATGAGGGGTGAGGAGTACTGAACCACCTCTGAGAGCCCAGTAACATGCCTGATCCAGCCAGGTGGTCCCCACCCCTTGAGGCCATAAGAATATGGGGCAGAAACAAGCCCATCTGGCACTTGGGGTGTTCTGGTCCTCACACTCTTTCTCCTTCCTTCCCATAACACTGGATATTTTCTCTGCCGAGAACTTGAGGAGTTGGTGGGGTTAT-GGATGCCCATCCAGCCTTCCCAGAGCTTGTGCCCAATGATAGTTATATTCGCATTCGCAGcaaacacttactgagtacccgccacatgcttcacct---ctgttcctcacaagcaccctacagaagtggactttcaccttcttcagctttagaatgagctgaagttcaaacaggatgtgtgacttgtgcaggatcacaaaccccgcagtggtgggagccaCCACAACTCTCCTCTATTAGATGATGGACTTTGATTGATGGGTCACCAtggaactatgcaaatttgggttcaaatcttggcgctccaatccctactatgcctattagtaggtcacttatcttgcctacatctgaatttcctcaactattcaggggagacttaaccatgagagtgagaatcttcaaatgggaagttcatggcttagtgcctaaaacgcagtagaggcccagtaaTTACTGGTGAACTATGAGAGTGTCGGGAAACATTGCTTCCCTCAAGCCCAGCACTC------CCTTCGAAGGAGAATGTCAGGATGAGTTATGCCCAGGGATTCTCAATGCAACAGAACCATACATATGCACAGCTGCTGTCCCAAGCAGGTCCATTCAAGCACCTGTGGGTTACCCTGAATGGTCAGTCTCAGGATGCACTGCTGCATGGACATACATTTCAATGCTTAGGGAAATGAACATAGGGATAGAAGTGGGAAGAGAGTCTGGGTGTTTTACATGTTAGCTTGGCAGCAGCAATGGACTCACTTGGGCTATGAATTGCTGTACTACATTGGGGCTGCAGAGTGAAAGGAAAGAGCCCTGGGCTGAAAGACAAGAAACAAAGTTTCTAGCTCTGGTTCATATCACTTTGGAAGCTTCCATTTCTCATCTGTAAAATGGAAATGAAGTTCTCCACTGGACAAAAACAATGGTGTAGGAGCTAATCATTAAAATGCCAGTGTTTAAAATTGGGTGTGGCCTTGGTTCAGCACCTTGGACAGTTCCTGTGAGTTCTTGCCTGTTTAGAACCTGGGGTCTTTACC---CAGCCAGAGCACGGGGCGGGGGTGGGGGGGGGGGGTCAACGGGGGCAGGGAATGTAGAGTGAGGGTCACATGTCA---GGAGCCTCAAGGTGGCAGAGTC-CTGGGA-----------------------------CTGTCCAA------------------GTGAGGGATGATTCACAAAGTCAGGGGAGAGTCTTGGAATTG---TCGTTGAGCCACTTGGAAGTTGGGGGTCCCATCACCCctctccatggcttctcattacccaccaaataaaggtcaaactccagtc-cttgtaacttgcccttaaaactagttagttcaccctaacctcatctgctacctgccacaagactgcactgtggccacacgca-ttcacttt-ccccaaacacaatgtctgcttcaggactccgcctatgccattttttcaagcttttccatcttcctggaacaccctctccactgtccttatctcagtctatgaaaatccttctcagcctctcaggctaaagtcaaagactgccttttccacaaggtgttccctgaATATTCCTCACTTTAGAATTAACCCTTCCATCTCCTCTGTTCCCACAGCACATGGCTC--------------------------AGAGTCTGAATCCCTCTAGCCTCCTACTGTCTT--CCCCCGTG------CATGCCTACCGCATGAATATCTTGCTCAGTACA--CTTTGAAATGAAAAAAAATCTTGGGAAGAGTGATGAAATGCCCGTA--GCAGAAGCTCCAGAACTGACCTTTATAGGAAGGAAATGCATGGCATTTCCAAAGGGGCTTGCCCGCAGGGTGGGAGCTTAAGTCT--------ACCCTTGGGCTTCTCTGCA a score=44708 s mm7.chr9_random 3247812 1625 + 9745104 catcagatttggtggcaaccacccttttagctcctactgctgagtcatctagctaaacccTTCTCTCCAGTGTAAAGCGATAGTTGGAGTAGCTGTCCTTCAGCACCACCTCTGAGTTC-CTGCCGCAATGGTGTACCTTAGACAGCTCACCTTA----CAcagtgcagaggt----cacagagatg-tggaaccaggctcccagccttcagatagcggcttcactgctttttatagctgtgtgacctcagggtcacatgataccatctctctgtgcct--gttttatggtatgtgaaaaggaaatgatcacaaa-tcgctagggttagtatgctgatcaagctaattagtgtatgcaaag--------------agtgtattagtcatctttcaacaagtgtcagccatgatGGTCA----TGTTTAAAAGGTTGATTGCCACCCACAACATTCAATCCTGCTGATG-----------------CCCACTTGAAGAG---------CCCTG---AGAGTC---TGTCTGGGATGCAGGTGCAGACAGGA-TGAGAGTAAGGAAATCCTTAGCTGCAGCTTCCTCTGGAGTGGGACCTGCAGGGCAGCTA----------TGTAGCCAGAAAGGAC------------AATAGGCTTTCTCAGCACTGAGGGAAACAGTCTAATTTCACAGCCACACCCACAAGCCCCTGGGATGCCCAGCACAGCTCTCTTTAAGACA-----------------CTGCCTGATAGAACTTCCTGCGCACACCGGTCTAGAACTAATTGCTGTCCTGACAGTGCCTGCAGGGAGCAGACTGCAAGGTCACAGCCAG-GCTG-AGTGACTTGATT-CCCAGTCCTCTTCTGCAGCCTCCTCCCTGCATGGAGACTTGGGGGGGGGGGAGATGAGGTGTTTTTCTGACCATCCCTCAGCCTGATGCCTTCTTTCAGTTCTGGTTGTAATGGGGACAGAGAGCTCAGGAGGCAGGACAGAAGGGCCCAGTGTCCCCTCCCTCAGGACTTG-GGCCCATATTTCTCCCTAGGATGACAGCATTTCTATTACCTTAAAGGGCTCATCTATTCATGCTGCAATTTTTTGAAGCCCTGTCTGCCATTATTGAGCCCTGCATGCTGGCAAAGGGAGCAGGCACTCCATCACCCAAATGAACCAACTCCTTCCTGCATTTTTCTCAGCTTTCTCCGCTCTGTCCATAGGTCATATGCAAAGCTTAGCTGCTTGGGCTAGGGAAGGCAGGAGGGGGCC-AGAGTCAC-GACCGCCAGATCAGTGGGGCAGCAATTGAATTTT-CTCTGCACAAGGTTTCTGGCATCCTTTAAAGAGGTC-----------------------TTTCCGCCAGCT------------TCCCAGCCTCGGGGTGTGTGGTTCCTGAGCTGGAACTCTGGAATGACGGCCGGTGT--GGCCAGGAGAGAGTGCAGGGTGGAAATGACAGCCAGGCGACACACGAAGCACACCTGTGCACTTCCCGTTCCA-------TGCTCATCACCA--------------------TTGTTCTAAGAGCAGAAAAGCAATTTCTCATTCCCTGCCCCACCCCCCATCATGGTCTACCGTCTCAATTATTGTCATAAAAGATTTTTCCTGATGCATA-TTAAGCATGACAAATTTATCCTCTAGCTGATGTAGTTGCATGAACAAGACTGTGCAAAGCTTTA--AAAATTA-CCAAAAATATTAacacacacacactcatgcacacacatttacacatactca s bosTau2.chr10 5777113 1679 + 70001009 CATCAGATAAACAGGTAGCTGC-----------------------------------------------------AGGGGGGACTGGAGCAGCTAGCCCCCAACATCAATTCCAGGTTCACTGGGCAAATGATGCAAGTT------CCTACCTTAGcaatacagtagagtgatgttactcagagatgctggagggagattctctgcctttaaataccagctttgctgagtatta--gttgtgtgaccttggg----caacatacaacctttccatgcctctgttttctcatatgtgaaagggtaataataataaagtccagtgagttactgggctggttaaattaattcatacatataaaataactagaatacctggcatattagtcatccttcaacaa-tattagctattTTCACCACCACTGTTG-------TGGATGCTGCCAATGTTATTT----TTGTTGTTATTTATCCAAAGGGGTCCCCCACCTGAAGAGGTTGACTGGTCCTGGCCAGAGTCCCCTGTTGGGGGTACAGGTGGAAATGGAAGTGAGAGGAAGAGCAG----AGCTGAAACTTCCTCCTGGCTGGGAGCGGCAGGGTTCCCAAGGGCTCCAGGGTTCCCAGGGACAACCGCAGAACCAAGAATAGACTTTCTCATCACAGCAGGGAGAAGACCGGCTCCTCAGCC---CCTCCATGCTCCTCCGTTGACCAGC-----TTTCCTTAATTAAGGCCTCACCTAGGTGGCCAGCCTGATGAAGCCTTCTCTGC----TGCTCTAAAACTAATTGCTGCCATGTTAGTGCCTGGAGTGAACAGCCTGTGAGGTCACTGACAGAGCTACAAAGACTTGATTTCCCAGACCTTCTC-----------CCCCCCATCGA-ACCCGTGTGGCTGGGAGATAAGG-GACCTTCTGGTCATTCCTCACACAGATGCTCTGTTTCAGCTCAGGCTATAATGGGGACGGGGAGTGTGGGAGGTAGGGGAGGGGGGCCTGGTGTCCCCTCCCCTGGGACTCAAGGCCTATATTTCTCCCCTGGATGACAGAATTTCTATTACCTTAAAGGGCTCATCTATTTATGCTGCAATTTTTTGAAGCCCTGTCTGCTGTTATTGAACCTTGCATGCTGGCAAGGGGAACGGGTACTCCATCACCCAAATGAACAAACTCGTTTCCCCATTTTTCTCCCCTTTCTCTGTGCTGTCGGTAGGTCATATGCAAACCTCAGCCGCTCAGGCCGGTGAAGGCAGGAGGGGGATGAGAATTACGGAAATCCAGATCAGTGGAGCATTGATTGAATTTTCCTCTG----AGGTTTCCTATGTCCTTTAAAGACGTCACCATCCCCCTGTGCACACACAGCCCCCACCAGCTGGGTAAAGTGCGTGTCTGCCTC---TTGTATGGCTCCTGAGCTGAAACTAGGGACCAAGGGCAGCTACAGAGCCAGAAAAGAAGGTTGACTGAAAATTAGAGCCAGGTGACATGTGTATAATGTATGTGCATTTCCTGTTGTAATTGTTTTGTTCTTCATCAAACGGAGGTCTGCAGACGATTAGCCCTATGCCTAGGAAACTAGCTTCTCATCCCCTG-----CCCCTCACCGTTGACTAGCTTCCTAATTATTACACTAAAAGGTTTTCCTGGATGCTGAGCTGGGGATGAAGAATTTACCCTCTAGCTGCCATGTGTCTGTGAGCAGAGGAGCACAGGGAAATAGCAGAATGATCCAAAAATATAAATATACACACA------CACAcacattgtccagtactca a score=19290 s mm7.chr9_random 3250192 828 + 9745104 TTCACCTGTAACACAGGAAACACATGCATATTCTGTTCTAATGTGACCCTTAGGATTGAACGGTGTAAAATGTACTCAGTGCTTAGAATAAAACTTGACTTGTAGTAGATGTTCAGTGA-TGCTTGTTAAGGTATGTCATGGGACTGTGCCAGGTTTGAGTTAAACATGGGCAAggtct-tgaggtcaagtggggctgagtaggaagctgaa-tctgaccctcagcatctacatggcccacagccatgtgctcagcctcttagagtcccacatgcctctctgtacaatgggcaaagaatGATGGCCATGCAGAAGCAAGGACAGAGAGTGAGTCGCTGGCCAGAGCTTGTTGTGGAGAGCTGAGAATT--CTCTCTCAGGAGAagagctagaaggacacgctgcacttccttaaccccccccccccattctgctggggaggaaactaagggct-gacagagagagtgacttgcctctggtcacatagcaaaaggatgcagcagagctgggGTCCGGCAGAGGTGAGAA----CTCCAGCTGATGCTCTCATGCCCTTCACCTGCCTGTCAGGAGCTTGTTCTCCCCTGGGCAG---------------------GAAGGAGAGTGGTGAAGACACTCGGGTGGTGTGTACCAGGAAGTTAAATCATGTTGGCAATTAATCCACAGAGCAAAGTAGAGAGAATTGGCTTTGTGTCACTGAGGCTCAGGCTAGCA-TCTCCCTCTGGGACTCTGTGGTTTGTGGCTTCATTAGGGGAAAGTGCTGAGTCTTCTCTT-------------------CCTATCCCATCCCATCCTTTTCCTGCCAAGCTCCTGCTGCCCTCCTCAGTGTCCTCGTCACTTGGG s bosTau2.chr10 5778862 814 + 70001009 ttcatctataaagcaagggaaataatggtattatgttctagaattatttttaggattggattagataaaatgggcatgatgcttaggaaaaagcctggtgggtactgaatgttcaacaagtagttgCTGAGGTTCCTTCTG----TTTAC-----TGGAGGCaaa---gggcatggactatggggtcagacaggtctggattggaatcttaagtctgctgctcagtagctgtgtgaccttaggcaacgtattcagcctctctgagccccagcttcctgtctcttaaatgggttaaacacacctgccCTTC-------------------------CTGTCCG-----TGTGAGCACAAAACAGGAATTAGCCTtcacagtggcagagttgaaagaatgatcagtgcttccctagcgcaccctctt-attttat--------aaaccgaggtccagacagggcaagtgacttatcttaggtcacacagcaaatcactg--gcggacctgggatgtgatgcaagtgacatatctcccaatctgatgctttttccacCTTCGCCTCTGTCTCATGAGTTTGCTGTCCCCACAGCAGACACCTACTGATGTTTCCCAGGGCAGGGAGGGATGGGGGAATCT------------CCAGCATGTTAAATCATGTTGGCAATTAATCCACAGAGCAAAATAGAGAAAACTGGTTTTATGTCACAAAGGCTGAGTCCAACCTTCCCCCTCTGGGACTCTATGGTTTGTGGCCTTATTAGGGAAAGCTGCTGACTCTTCTGTTCTAAAAAAAATAAACAATCCCCATGTCATACTACCTTCTCCCTGCCGTGCTCCTCATGTTTCCATCACTGCCCTCAGGACCAGGG a score=5163 s mm7.chr9_random 3252280 204 + 9745104 ccccacctctactccacagccccgcccctgcccacagccctgcccctgcactacagccctgc----ccccagcc-TTTTCTCCCTAGGT-ATGATCGCTAGTAATCTCATTTGTAAGAGGAATTACACACTCCATGAGGGGAAGGAGTT-------------TGGTTATGACTTAAAAATGAGAGATGCTGTTGAAAGGGGTGGTGAACCAACAGGAAAAAGG s bosTau2.chr10 5780928 211 + 70001009 CTCCCCTCCTGCTATGCGGCTCTGACGCT--CCAAAGCCCCACCC---------AGCCTGGCTGCTCCCCAGCCATCTCCTTGCTAAGTCATTAGCACCAATAATC-CATCTGCAGGAGTAATTATGGACCCCAGGAGGGGAAGGGATTCCTGCCAGAGATGTGATTATGTCTGGAAAATGAAAGATGTTGCAGAAAAAGGTCTTGAATAAATTAAGGTAGGG a score=4999 s mm7.chr9_random 3252610 265 + 9745104 AGTCCCCTGAACTCAGACCAGGGAAGGTGTCTGGGGT--CTCTGAGAGCATCAGGCTCAGATGGCACAGATGAGCAGAG--TAGGAAA-GCAGTGAGAGGCAGTGGGAACTCAAGTGACTGGGCCCTGAAGGCTTGGCTGGAGAGCCGACCCTAATGCACCAGACGAACAGGAGCCACTGCAGCCCAGAGCAGGGCTGTAACAG---GGAGCAGGCCTTGACCTCCCTCCTACATCTAAGGGGGTAGTGACAGTGTAGCATCCAGAGtcagca s bosTau2.chr10 5781251 251 + 70001009 ATTTCCCTGAGACAATCCCAGGGAGTGAGGCCCAAGTGGCTCTG----CCTTTGACAAAGATGGCCCAAGGGAGCAGAGGTTAGGGAGTGCAAAGGAAAG-AGTGGGAGCTGAGAAGGCTGGGCCCTGCCAGGTGAGCACGGG-----------------CAGGCAAGAGGGAGTCGCAGCAGTCCTGAGCAGGGCTATGACAGCAAGGCGCAGCGCCTGACCTTCACCCCCTGTGTGGGGAGATGGCGACATCACGGTCTAGGGACCCAGCA a score=3316 s mm7.chr9_random 3253385 180 + 9745104 ACTGTAGGTCACATTGAGTCTGT-CCTGAT-GGTGAGCAGGACCCAG---GGCACTTGGCA--GCCACA-------CTGGG--CTGAATGAGCGG-TGGATGAGGC--------------CATGTGCTTTGGTCTCACTGCAACCCACAAACCCTGACTGACAGTCCGGGG--CTTGCCTTCCCGACTCATCCCATCTCCTCCTCCAGCAAAA s bosTau2.chr10 5791819 210 + 70001009 actgcagggcgcatgggttcaattcctggtcagggaactagatccagcatgccacatggcatggccacaaaCGTGGTTGAGTACTGAATGGGTAAATAAATGAGGCTGGGTCACCGTGAGCCAGTGTCTTTGCCTCACGGAAACCCACATACTCTGATGCCAGGTCCAGGGCCCTTTCTTGCCTAAACCATCC---CTACTCCTTTAGCAAGA a score=20433 s mm7.chr9_random 3253906 583 + 9745104 CTTTGCTATCCCCTGGGCCCCTCTGCTAAGCTCTGACAGGCAGGCGGGTGCACAAACCCCCTTAGCATGCATGTAAGGAACCTAGGGTAACCCCATTTATACTGCCTCCCACCCACTGAGTGTATTTAAGGGGACCCAGGGATAAACTTTCAGAATTTCCT----CCTTTGTATAAGGGAGGGGCAAAACCCTTCCGTCCTCTTTCTCCTCCGATGCCCAAAAACACTCATTAACCTCTTGACCATTTCGAGGAGAAGGGATAATCGGCACAAGAGGCCCAGCTGTTGATTAATTTTCCCAAACAGAGCCAAACTACAAAGCAGCATATTGCAGAGGAGAAAAAGCCAACAAGCAATGTTTGAAACAAATTTTATGGAACACATAAGGCACCA--GGGTTGGGTCCAGCC-----------------------AGTCGGGCA------GGAGAGGCTTCCATCTGT----CAGGAGCAGCATCGAGGGTTCCGTGCA-TCAGCAACTC--TCATATCAGGTTCAGAATGTAAGCAGCCCACTCTGCATCCGTAATTAACAGGCCTC----ATAGAGGAGGAAGTCCACAGCTGCCTCCTGGAGCAGAATGAGGAGGCCTGGTGGAATAG s bosTau2.chr10 5792057 626 + 70001009 CCTTCCTGTCCCAGAGTCCTCTCTGCTGAGCTCCATGGACCTGTAGAGCATGCCCACCCCCTCGGCCTGGACCTAGGGAACCCAGT-TCACTCCATTTACACTGCCTCCTACCAACAGAACATGTTGAAGGG-ACCCTGAGGTGAACTTGCACAACTGCCTACCCCTTTTGTGTGAGGGAGGGTCAACCACTTTCCATCCTTCTCCTCCTTTCATTCCAAGAAGTATTCATTAACCTCCTGCCCATTGCAAGGAGAAGAGATGATCAACACAAGGCACCCAGCTGTTGACGAATTTTCCCAAATAGGGCGGAACTACAAAGCAGCATACTGCAGGGGAG-AAAATTCAGTAAACAGTATTTGAAACAAATGTAATAGAACATATAACTCATTACCCACTGGGGTCCAGACCCCTGCTGCCACATTGCACAAGGAAGCAGGTGGAAGGCGGGGAGATCTGCAACTCTGCAGTGGGACCAGCTCCGGAGCTTCCGTTCAGCCAGCCACTCTTTCAAATCAAGTTCAAGGTGTTAATAGCCTAGGCTGCATCTATAATGAACAGGCCTTTGGATTGGAGGAAGAATTCTCATCCATCCTCCATTTGCGGAGTGAAGACACTGAGCAGGACAG a score=2776 s mm7.chr9_random 3255732 264 + 9745104 GGCATAAGGTGGCCTTGCAGGGAACAGACCTTCTTGTCCCTAAGGCTAAGCACTCAGTGTTTGA---TAGTTAACAGTGTGAGAAGGGAATGAGCAGCAAGCTTA-AGGGGCTGATGGGAA-----AACAGAGGCCTTTACAGTTGGGCTTCTGCCCTCCGAGAACACATGCCTCCTCCATGGCTAGCCTGGCACCGCTGAGTTGGTGAGAGACCGGCCTCTCCTCCCTCACTTCCTGCTGCTTAAATCCTAAGGGGCTTGTCATTTTCTTTT s bosTau2.chr10 5796295 264 + 70001009 GGCACATGGTAGCCCCTCAGTGAGTGGTCATTTCATCCCCCAGAACT--GTGGTAAAAGTTCAGGCCTGTTCAACTGTGGTAAGGGGAACCAAGAAGACAGCCTGGAGGAGGTGGCAGGAAGCTGAAACTGGGGGCGTGA-----GGTCACGTGCCCGCTGTGAACAGCTCTCCTCTCCTGCACAGGGCCGGCATT--TGTTCGAGTGAGAGATGGAGCCCTCTACCAGAGCTGTCTTCTGCTGAAACCTTAGAGGGTTTCGTGTATTCGTTT a score=5429 s mm7.chr9_random 3257620 576 + 9745104 ACTCCCGAAACACCCCAAACTT--GTGCTGCTATGCTGTCTTGCCCACAACAACTCTATCCTGGGATGCCTTCA-------TTTCCCTG-------------------CCCCTGAAGACTCAGAGGTCCTCACTCTCAG----CCTGTGCC---CTTTAACTCCCCATGCCCCACT------------CCACCCCAGGAGCTGCCACCACTGCCA-GGACCCCATGCTGTCCTATCTATATATACACCCTTGGGGATAGA-----------------------------AATCAGT-GCCCTCTGCTGAGCCCCCCTTTAGAACTGGAGCTTAA--GAAGAGC-CAACTTCCCCTGCAAGTCATGCCGTCCTT----GGATGGCAGATAGTCTATGATTGACACAG---ATGCAATGTCCCCCACCC-----------AGGTCGTTTTTGGGGTGCCTTCATCTCCTGAGTTTCCT-GAGTGCTAGGCAAGGCCATCCTTG------------------GTTACTGTCAGCCCACCAAGTCCTCTTTCCTGACCCCACCTTAGGGTTGTCT----AAGATCAGTAACC-CCAAGTCCCAAAACAGCCCCCAGAGAGTCTGGTTCTCAACGCCCAG--TGACTTGATTAAGTAGCCAGCCTGGGACCAAAGAGAACCCCTCCACTTTGAGTTCTGTGACCTG s bosTau2.chr10 5798820 688 + 70001009 ACCCCTAGAACATTCCCAGCTCCCATACTCCTCTGCCCTCTTGTTCACACCCTTCCCA-CCTAGACTGCCGTTAACCCCACTTCCTCTGATTAACTGAATTCTTCCACCCCTCAAAGCCTCTAAAGTCCCCATTATTGGTAGCCCTGTGACTTGCCCTCACTCTTAATGCCTTACTAGAGCTAACAGCCCACCCAAGGAGGT----CTGGTGCAGTGGATCCTGTAGAGTGTCACCCAGATA--CACCATTCAGGATAAAGGCGTGCAGTTTCCTCCCAACTTCAGGAAACTTAGTagctcccagatgagtctctctgcagaaactgccttccatcaaagagcacagattcccctg-aagtcatgcccccttccccggggcagtggata-ccaatgactggtcaggggtatggagcctctctctccctttcccctggcaggacaattctaagggccaaccagctccagagcttcctagcagaacagctgaggctattgttgcaactgtaccagagttcaatttctgtctgtccttc----ctccttccctttcccctcgtagggattgttctcaagagcccactagtctccatttcagagaatgttttccaaggaaACTGGTTGCCAATGCTAAAAACAGAATGGTTAAGCAGCCAGCTTGGCTTCAAATAGAAATCAACCATAGTTAGCTCCGTGACCTG a score=28630 s mm7.chr9_random 3259315 1640 + 9745104 CAGAGCCACCCAGAGTGGGGACACCTCTCGTCTCATA--CCCAGGCCTTCTTTGTGCAGGGAGAGGTGTGTGCCGTCCCCTGTGCTGCAGGGACCTATGGTCCCAACTGTTCATCTGTATGTAGCTGTAGCAACGGCGGCACCTGTTCCCCAGTGGATGGCTCCTGCACCTGCCGAGAGGGTAAGTTCCCT------CCAGCTCTTGTCCCAGGCT---CATACAGCAC---CTCAGTGAGGCTGTTTAA-GCCCACCCACC---ACTCGGGGTCAGAGAGTGCATAGGCCAGGTTCCAGCCAAGGAAAGCCACAGCCAGAAC--------CAGGAGTATAGGAG----GGTGTCCTTCCGGGTT--TGGAATTGCTG--AGGGCATG-GAGGGAAGGTGAGCCACATGG------------------------TCTGC---------------AGGGACAATATGGGGAGACGGAGTTTCCTGAACCTGGATGAGAGACTCATCTGGTGGGAGCTAAACATGCTTTGCGGAGGCACTAGTGGACCAAAGAGACAAAGCCCGTGACAAAGGCTGTTtgacagacatctgtaatcccagcacttgggaagcagaactaggagaaagtgtagctctgggttatcctgggctacataatgaAGGGAGAGAAGAGGGTGCACCTGGCTCCTTCCCCATTCTTGTCTTG-------GGGCCTGGTCTCCCTCAGG-AAGCCTGCCTGGAGGCAGCAGCTAGGAAGTCCTTCAGTCCTCAGAAGTAGCCTCCTGCTTCAGGGAACAGA-GAAGGGGGTGTTCAGCCCTAGGTG-----CAGG--AGCAGACAGGCTTCAGGAAGGA--------------------------------GATAAGCTGCTGAAATCCCACTCCTGGCCTAGGGGGA---CATGCCTCCAGA------GCTGATCCTGAGTCCCAGCGGGCCCATCCACAGGCAGCAGAAATGGTGTAAACCgccgggtgtggtggcacacgcctttaatcccagcacttgggaggcagaggcaggcggatttctgagttcaaggccagcctggtctacagagtgagttc--caggacagccaaaggctacCTGTGGCAGGCAGGGACGGAG--GTCTAGGCA-ACTGTGGTG-GCAGGGATGCTGCCTGTGGGTGGGGAAATGGGTGGAGAGTTATACTG------GGCAGGGCCAGGTGACACCCTT-TGCCCTCTCCCCAGGATGGCAGGGCCTGGACTGCTCCCTGCCTTGTCCCAGTGGGACCTGGGGCCTGAACTGCAATGAGACTTGCATCTGTGCCAATGGAGCTGCCTGCAGCCCCTTTGATGGGTCCTGTGCCTGCACCCCAGGCTGGCTGGGGGACTCCTGTGAACTGCCCTGCCCGGTGAGT------------------------ACCCA-----CCTTGATCTCTTGTGCC-----TTCTGCTCCCTGGAGGGCAACAGAGAAGAGCTCTGAGTCAGG-GAGGG------------------TCAACCTCTGTG-TAGCTTCT---TCTCACCGTAGGCCTCGATCCTCCCATCTGTAAAATGGC---CACT-----CAGGCAGAAGTG-------TTTTTCCATTGCTCTTTAGATAGGCA------------GAGCAACTGACT----------GGCAGCTATAGAATCCACCCTGCCAGGACACTCT----CCGTCCTCCCCAACCCAGCAGAATGATCTCTCTGGGTAGTAGATGAGTTACAGTCTAGCCAC------------TGCTAGGGACAGGGTATGG--------AACCAAACCG--TCCAGCAACAACCCCCACTCTTCAAGCACTGAGTTCTAGGCAGAGACTGAA s bosTau2.chr10 5800541 1768 + 70001009 cataGCCACTCATCATGGGG-CACCTTCTGACTCAAAATCCCCCTCCTCCCTT-TCCAGGGGGAGGTCTGTGCAGCTCCCTGTGCGGTGGGGACCTATGGCTCCAACTGCTCGTCTGTCTGTAGCTGTAACAACGGTGGCACCTGCTCCCCAGTTGATGGCTCCTGCACCTGCAAGGAGGGTAATGTGCCTGCTTTCCCATCCCATCCCCTCAGATGTGCACACAGAAGTTGCCCAGGTGGGCTGCCAGCTGCCCACCCACCCACATGCAGAGTCAGGGAGCCtgtatgtcaggttccagccaaggagactcatgcccgggacttcaacagcaggaatgtaataaaagcgatttgttaccagggtgttagaagagctgcagagacatgcaagggaatgtgagcaacccggaaattcctagcttctctcacagttgctaccacttctagggtgagagggacaaagggagaaagtggagttcccagagcctgtgagtgagggccacctggtagggactgag---------------------------acaggggcagagcagctgcaagatggtgctgga------------------gtactgagacagccgcccccagag--------gccctg-------------ctcacagcagagaaagaagagaagaTGCCTGTG---CCTCCCCTGCCCCCGCCCTCCCGCCACTGGCCAGGTCTCCCGCTGGCAAGCCCACCTGAGAGCAGCCGCTGGG----------GTC---------AGCCCCCTGAGACACAGAACAGGTGAAGAGGGGAAATGGATCTGAGGGGGACACAGGCCAGTAAGCAG-CCTCAGAATGGGAAACCAGCCTGTTCCCAAGCACAGGGCCCTGTGATAAGCTTCCTGAGTCT-GCCCTGGGCACAGAGAGGACCCCCACCTCTTGATGCCCTATTGATGCCCTGTTCAGGTGGGACTATCCACCTATAGCAAGAACAGAGAGAACCAGCAGGCA-GGAGAGTCA-GCTTCTAGCCCCTGTGCTC----------------------------TCAACAGCCATGCTGTGGTTCCGAGTGGACTCAGCAGGTGGGATGTGTGCTCTACCCAGCTACCAGAGAAGGGGTGGTTTGGGTACATTGTCTTGTACAGAGCCG------------GGGGAAGTGGGCAGAAAACTGTGTTGACATGTGACAGAG--AGGTGACAGCCTTGTTCCTTCCCCTCAGGGTGGCAGGGCCTCGACTGCACCCTGCCGTGTCCCAGTGGGACGTGGGGCCTGAACTGCAATGAGAGCTGCGCCTGTGCCAATGGGGCGGCCTGTAGCCCCACAGATGGATCCTGCTCCTGCACCCCTGGCTGGCTGGGGGACACCTGTGAACTGCCCTGCCCGGTGAGCGTGGGGTGGGAAAGGATGGGGGTGACCCAGCAGCCCCTCAGACCTTTTCCCTGTGGTTTTGTTGTCCACAGAAGTACAGAGAAGAGCACTGGACCAGGTGATGGAACACCCAGATTTAGATCTCAGCCCCAGTTCTAACCTCTCGGTCCTATTTTCAGCCTCAGCCCTCTCATCTGTAAAatggtagatactggggatatgctgatgtggagtcactttccccagggtgctcttggtaaccattattgactctggcacagttaacctgagcccagatgcaactccagaatccttcatgacacagctctacaggacagcccttcctaatccatgagagttgccaGAGTTGATAATGGCTAAGTTTCTTTCTAACTCCAACAGCCTGTAATTTTATGATCAAGGTGTGGGAGGATTAAACCAAGCAGTATCCAGCAATAACCACCTTCACTTACTCCCTGGATCTTAGTCTATGATACAA a score=1541 s mm7.chr9_random 3261229 112 + 9745104 ttgagctcatagcaatcctc--ctgcctctgcct--cccaactgctgggattacaagAAAATCTCCCCCTA--------CCATG-CCTGTCAACAACAAAATGCATTTTAACCTACAGTTTTAAT s bosTau2.chr10 5802512 125 + 70001009 ttgagcacacaacaaacatcgatTGCCACCTTCTTACCCAGTAACAAAGAATAAATTATAATCCTTCTTTATATGTGATCAATGTTCTAAAACTGGCAAAGTGCATTTTCATCTCCAATGTTAGT a score=12025 s mm7.chr9_random 3261395 525 + 9745104 TTCATGCCCTTCTCTCC--------TATTCCTATTAATACGGCCAGGTGGTTGTT----ATGACTTCTTAGCCTGTTGGTACCCAGTTACAGA---GCATCATGGCGGCGCCCCAGGCC---TGCCTCTGGATCCCTG--------------------------AAGAGCTGATGGAAGTGTGTGACCCTCTAGGAGCCAAGGTATGATTCTTTTCTCCTTCCTCCCCACAGGACGGCACTTTTGGGCTGAACTGCAGTGAGCATTGCGACTGCAGCCATGCTGATGGCTGTGACCCTGTCACAGGCCACTGCTGCTGCCTGGCAGGATGGACAGGTAACCTCTGCCCTGCCAC-TCACTTT--GGGCCCTGG-----------------GTTTTCCCTCCTTCATCTCAACTGTTCA------TCTCCTATCATTTTCTTCCTTTCTGCTCCCAAATGGCACCTCCCCCTCACCTGCTC--------------CCATT-CAGTCTGGTGAGGAGATATTTATTAAGGACACGTTATGCTGAGGTTCT-------GGTCTCGGGGCAACACATTT-----CAGTGCTGACA--------GGTATTCAGCCTGTA--TATAGTGAACATGGCG s bosTau2.chr10 5802676 616 + 70001009 ATCACTTCCCTCCTTCCAAACTGCGTACTTTGCATAATGCAGCCAAGAAAATTTTGGGAATGACTTCAT------TGAATCCCCAATTATAAAAACGTGCCTTCACTTTGCCCCAGCCCCAGTTTCTCTGCATCCTTGCTGGGTAGCGGCTCAGTTTTGTCATCAAAATCCCACAGAAGTGTGAGAACCTCTGGGGGTCTAGA------TCTCACCACTTCTGTCTCCACAGGATGGCACATTTGGGCTGAACTGCAGTGAACGCTGTGACTGCAGCCACGCCGATGGCTGCGACCCCGTGACAGGCCACTGCTGCTGCCTGGCCGGATGGACAGGTAACCCC--CTCAACCACACCACCTTCCAGGTCCTGGGAAACTGAGCTTCTGGTGTTCTGCTGCCTTT-TCTTGACTTTTCCTTCTTTTCTCCT-TCACTTTCTCTTTTTATTTCCTAGGAATGCATCTTTCCTTTATCTCCTCTGGGCTTCGGTTCTCCATtccattcaaattaacaaacgttaactgaatacctgttttgtacagactcttttcgaaggtctggggacagaccagtttttaacaagtcagacaaaagtgtgggtgctcagtctgtgcttacagaggatatggtg a score=12720 s mm7.chr9_random 3264826 696 + 9745104 CTCCCCACCCTGGCTGTCTTACCCTATTC------CCTCCCTCTCCTAC------AGGTGAGCCTGCA-GTCTCAACT--CCTCCAAATTGGTCCCACTGCTCCCCTTCA----------------CTGTTCGCTGGGTCT-----------TCCCTCTTTGTTTCTCTTTCTCACAGTCCC-GTCCTTATAACAAGGTAGACACGACTTTTAAACTAATCCTGTGCCTCT-GGAGCCTCTGAAGCTTGCCTTCCAAAGACTGGCTGGTCTCCTGAGCC---TGGTCCA------------------GCCTGGAAGCTGCTCTGCCTGGAAGGGACCCCCCCC--------------CCACCCCCCG-----CTAAAATTCCTATTTAGCCTCCAAGCTGAAATCAGCTC-AGCTCAAATCTTCTTTG----AGCTTGGGGGGACTGT--AGATCTTGTTCCCTCTCTTATTGAAATAGTCCATCCATTTTCCCATAGGCTGCTGTTTGTCATGCTGAAGTTCATTTATTAGCATGTTTAGGGTATAGCTAGCACTTTTAGTTTCTTTTATACGTGTGTATATGTGATATAAAATATGTATTATGTGTGTGTATATTTGTACACATATTTGAATATTACAAAATTACAgtctcatgtagctttggttagctttgaactttctacatagttaggatggccttgcat-ttATTTGTAAATTAAAAGGGGtatatatacatatatatatatatatatatatatatatatatatatatatatatatacacat s bosTau2.scaffold2934 3547 696 + 96106 CCCCTCTCCCCCACTCTCTGCCTCTATTCTGCCCCCTCCCCTTTCCTGCCAGCCCAGGTGGGCTTGTACATTCCAGCCTGCCTCTAAATTGGTCCCACCGCTCTCCTGCTGCTGCTAGGGCCGACTCTGTTCACTGAGCCTGAATGTCTTCCTCTCACTTTCTTTCCCTTTCTCATGATCCCTGTCCTTATATCAAGCCAGACATGCTTTTTAAACTAATTCTGCTCCTCTCTGAGCCTCTGATATTCACCTTCCATGGCCAAGTTGGTCTCCGGGGCCCCATGGTCCATTCACCTTGTGCATGTCGGACTAGCAGCCTTTCTGCCTGGGAGGAAGCCCCTCCACAGAGCTGGGTATCCAGCCTCAGGCCTTTTAAAATTCCTTCTCAGCCTGCAGGCTGTAATCACCCCCAACATATATTTCCTTTCTCTCAACTCAAAAAGATTGTGTAGGCCTTGTTCT---TCTTTCTGACAGATTCCATCCATCCCCCCTTAGGTCACTGTTTGTCAAACTGAAggtcattaaatcagtttgttgggtcacaactagctttttttttttttccttaa------------tgaaatagaatacatc--------------------------------atagtgcagag--aaaatatcagattgcat---------------------catagtcag--tgacagtaaatgtcatttgcagagcac---tggtttctat---------------tattcatatgtatgcacatttg-atataaa-atacatat a score=33228 s mm7.chr9_random 3265717 1041 + 9745104 AACTTTAGCCATCTTACTAGCCTGACATGTTCTTGACGCCAGCTCAGCTGTGAAGGT----GGAGAC--------AACCGTCCTCATCTGGTGCT-ACCATCTCCTCTCTTGCTAGG-CTCGTCAAGTAACGTCATGGGTCTACCC-TTGTGCTGTGTTCGATTCCAAGCTATACTGACTTCTTTTGTTACCTGCTCTCTGCTTTTATGACAGCCATTGCTTGGTCAGTTCTT-TTTGCCTTTGAGGACTC---TGGAAGGGCATCATCTCCTGTCAGAAGCCCTCCCCACC-AGCCCCACTTCTACTGGCTTTCCCTCCATCTCC--------------CCCCTGCCCTCCTC--------------------CCTTTCCACTGACCTGCCTCTGTGTCTGGTCCACAGGCATCCGCTGTGATAGCACGTGTCCTCCAGGTCGCTGGGGCCCCAACTGTTCAGTGTCCTGCAGCTGTGAGAACGGAGGTTCCTGCTCCCCGGAGGACGGGAGCTGCGAGTGTGCCCCTGGCTTTCGAGGACCCTTATGTCAGAGAAGTAAGGCT---CCTGATTTCCCGTTCCCTG---AGCCCCTCCCAGCCAGTAGTGCTGGCCTGTGGA-AGGCT-GGCCTGTGGACCCCAGGCCCCTTTTCACTCCCTTTTCCCCTGTTGTCCTTCCTCCCGTGTCCTGGCTGTTCTGTTCCTAAGTTCAATGTCTAG-----GTTCTCAAAAAAATCAGGGCCAGCCCACAGTTCTCT---TCAAAGGGGATGGACCTCCC--GGTGTGGGGACCCTAGACTTCCC---CATTTTCAAGAAGCCTTTCTT---CACTGGAACGGG--GGAGAGGTGGCTAGGCCAGCTGTT--CCTACAAGCTTCTGACCAGCGTCTCCCCTCTGACACCCTCAGTCTGCCCACCAGGATTCTACGGCCATGGCTGCGCCCAGCCTTGTCCCCTCTGCGTGCACAGCAGGGGGCCCTGCCACCACATCAGTGGTATCTGTGAGTGCCTGCCAGGATTCTCTGGAGCCTTGTGCAACCAAGGTACCCGCAACTGATGGGGAGGCCAGGG----CAGGGAGCAAAGGGGCAGAGAGAAGGAAGGGTCCAGGGA s bosTau2.scaffold2934 4470 1096 + 96106 gactgcagc-acatcaCTAACCT---------TGGATTTCAGCTAAGATGTCAAAGGCAAAGGAGGCCTTTcatgatctgaccccttctgattcccacaacctcatctcttgctgtatcccatcgagta-ctttatgctccaacacactacgctatattatccttcaaggcatgattctctctcttgcctcctgctctttgcacataggatttcctttacctggtcaattcttatttggtcttcaggacttatacttcagtcattcgcctcttcctagaagccctccctgcccatccaggccTCTGTTTG-TTCCTCCACATTTCCAGATGTGCTCGCCTCCCCAGCCCACCCCACACCCCTTTCTTAGTGCACCCTCACCACTGAC-TGAGTCTGT--CCGGCCCACAGGCATCCACTGTGACAGCACGTGTCCCCCCGGACGCTGGGGCCCCAACTGCTCTGTGTCCTGCAGCTGTGAGAATGGCGGTTCCTGCTCCCCGGAGGACGGGAGCTGCGAGTGTGCCCCGGGCTTCCGAGGACCCCTGTGCCAGAGAGGTAAGGCTGGCCCCCTCCCCACAGACCTTGGACAGCTCTTCCTCCCTACTCCTTCCCAGCTGCAGAGAGGCTGGGCTTACAGAGTT--GGCCCCCATCAAATCCC--TCCCTCTAATCCCCTTTCTCCCA------ACCTTTTCTGTCCCCAAGTTCAGGGCCCAGCCTGACTCCCCTGTAGAAATAGGACCA-CCCCCACTCCTCTCTGTAGAAAGGAACAGGCCCTCCGAGGTGTGGGTGGATGCGACTCTCCTGGTACTGTTGAGAAGCCTCTCTTCTACACTGTGGGGGACTGGACAGGTGGCCAGGCTGGCTGGTGCCCCTTGAGCTGCTGACCACCATCTCTCCTT---CACCCCCAGTCTGTGCCCCCGGGTTCTATGGCCATGGCTGCACCCAGCCGTGTCCCCTCTGCGTGCACAGCAGCGGGCCCTGCCACCACGTCAGTGGCATCTGTGAGTGCCTCCCTGGATTCTCTGGAGCCCTTTGCAATCAAGGTACTCTCTCCAGGGGTGGGGAGAGGGGTGTTCTGGGAGT-GGGGGGCAGGGAGAC-GAGGAGTCCTGGGA a score=51228 s mm7.chr9_random 3267306 1636 + 9745104 TGGATACTAGTCTGCAGAATTTACACCACAGTCAGTGAGAA-TGAGGGGATTTGAGAATAAAGTAAACTTAGAGCTAAAGACAtcttcaaagtcaccaaggcaagagt--cacctggcctgtgcttaaacacctcccttgaaaaagagctcactacctccagggcagcccattttttttgCTACATCATCACAGCTGAGCTGGGCTATTTTT------------------AATACGCCGGAGTAGACGTTTGACTCCATGATGAGTTGAGGTCATGAGAAGTTTGG--CCCCCTGGGGTACATATGTGACAGTTTCATTTGCTTGCAGCCCTCTTAGGGTCCTTTCATCACCATCTGACAGGCTGGGGTTTATTTATTAAACATAGGAGACCTGGCCGTCAATAGAACCGGGCCCAGTCTAAATTAGGAGCTATGGAGCCCAAGAAGGAGCCCTCACAGCCCATGTCGTCTGATTTATTGCCCGCTGGCCTAATGAGTCTTTTCCACATATAGATCTAATGGAGTTTGCTATTAATGGCAACTGCCCTGGTTAAGTCTCAAACCTTGTAAAAAATTGAACTGACACTTTCTAATGACTGGCTTTCCAGTGAGTTACAAATTACGGACAGCGCTTCCCCGGAATCATTAAACATAGATTAAATATAACCCAATGTTTTCTTTTCACCAGTCC-----------------------------CCGCCTCCCCTTCCCATGCCTGGCTCTTGATTCAGTTAAGAAGTCTCGCAATTAATGCATTAGACGGATCACATTAGCAGCTCTGTGGGTGAATTTGTCTGCCTTGGGGGTGCAGGGAGGACTTCAAAGAGAAGACTGCCTTGT----GAGAGCAGTGCAGTTGTGGGGTGAAGGCTGGTGTCACAGCTCCTGCACCCTACTCCCCACCAAGCTGGAGAGTCCTTTGGCTCAACCAACAGAGAGGGTGCAAGGAAGCCACCTTTTAGGATGCTGGGGCTTGAACTGGGCCCTCCGAATAAAGCATCTCCCAGAGGCAGGGAGGGGGCAGGGCAATGTGCCCTTTAGGAAGT-------GGGGCCTGAATAGCAAACAGG--------AGGCCA-------------GAGACTGGGCTAGAAG------------------GGGAAGCCCCAA---GCTCAGACCAGCCAGCCTACCTGTAGCTACTAA-------CCAAGGCCATTGAGTGGTGACTCATGTCCCTGTCTT---GATGAGGAAGCAGATCTAGGGGGTGGGGTGTGAAGTGAAGGGCTTTGTTGAAATGTCCTCAGCTAGAAAGCAGTAGGACTTCTTTGCTGTGTAACTGTGAGCAGACAGCACCACCTTTC------------------TCTATGGG--TCAAGGGAATTCAT--TGACGGTGAGCAATGATGAAAACAttatcaagattaagtgaacttagtatttgtgaaacattttgctcagttcctggtgcatgtaaatgcCACGT--GTGTTTGCTGAATGCAT-ATCAAAACTAGGACCCCGAACCCAAAGCTT-------CAGGCAGAGTCCAC----CTGTCTTTATCAACTGTCCCAACCACTAGCTATGTCC-ACAGAGGTATACACTACATGTGTATCGGAGCTACCAGGTGCCTACAGTCAGGCTGGGGAAGGGCTGGCACTTGGGGGCAGAGTGAAGGCACAGAGGGCATGGCATCCATGGTTTGACACCTAACAAAAGGAAGCTGTTTTCCTCCAAGAAATCACTACCTACC s bosTau2.scaffold2934 6960 1618 + 96106 TGAAGACAAGGATGCAGAATTTGTACTTTAACCTGTAAGGAGCGAAGAGATCTTTGTCTAAGGTAACCTTAGAACTAAAAGCAActtcaaggtcatctatgaaagagtttcatctggcttctgcttaaatacttcctttga----gagctcactgcttcccagggGACCGAATCGTTTTGATGAATAATGACCACTGAGCTCGGCTATTTTTGTAAGCGTGTGGGCCGTTAATATGTATGAGTGGGAAGTTTACTCCATGATGCTTTGAGGTCATGAGAAGTTTGGAACCCCCCAGGAAATGTATGTGACAGTTTCATTTGCTTGCATCCCTCCTAGGACAGTTTAATCATAACCTGACACGTCGAGGTTTACTTATTAAACATCAGAGACCGAGCCGTCAATACAGATAGACTGGGTCTAAATTAGGACCTAAGCAGCTCGAGGAGTAACTCTCAGATCCTGCAATGTCTGATTTATCTCCCGCTGGCCTAATGAGTATTTTCCACATATAGATCTAATAGAGTTTGCTATTAATGGCAACTGCCCTGGTTAAGTCTCAAACCTTGTAAAAAATTGAACTGACAGTTTCTAATGACCGGCTTTTCAGCGAGTTACAAATTACAGACATTGCTTATGCAGAATCATTAAACATAGATTAAATATAACCAGATGTTTTCTTTTCACCAGCCCCCCCACCTGCTCCCCCCACCCCCTTCTCTCCACCTTTCCTCTCTTTGCCTCACTCTTGATTCAGCTAAGAAGTCAACCAATTAATGCATTAGACTGATCACATTAGCAGCTCTGTGGGTGAATTTGTCAGCCTTGTGTATGTGAGAAAGACTTCAAAGATAAGACTGTCTTGTTAGCGAGGATGAGTTAGTTTTAAGAACGGGGTCAGTGGAGCATCTCTGGCACCCCATTCCCCAC----------------------------------AGAGGGCCAGGA-----------------CTAGGGGATGGATT-----CCCCAAATCAGGTACCTCCGAGAGGCTG---------------ACCTGTTTTTCAGGAAACAGAAGCGAGAGGCTGAGCTGCAAACAGGTGATGTGCATGCCATCCTCCTGGCAGTGGACCTGCCCTGGAAGGAGCTAACGGTTTTGCTAGGGAAGAGCACAGGGGCCCAGAGCAACCAGGGTTCCCACAACCATTAACTACAGCCCAAGGCCCGTGGGCGAGGGttatcagccccatttcaaagatgaggaaacaga-----------------------------cttgctcaaaggtcctgagacagtgagtggcagaacttcc--------tagctgtgggcaagttacttagcctctcgatgcctcagtttcctcatctgtagacttaatagggagtaataatgaacatgtataataatgagagtatta-caaggttaa------ttaatatttgtgaagcactctgaacag----tggtacatgcaagagacatagaagtgcttattgaatACATAAATAAAACCA-------GCAGCCAAAGCTTTGGCTGGCGAGCCTGGTACACCATGCTGCCTTTATTGTTTGTCCCAATTGCTAACAATGTCCTGGAGAGACACAGAGTGGACACAGATC-------CTAGGCAGCTGCTGCCAACATGAGGCAGTG-TGGCAT---AGGGAGTGGTGAGGG--CTGCGGGCCCAG--------------------------GGAAGTCGCTTTTCTTCAA-AAATAACCACCTTCC a score=11303 s mm7.chr9_random 3269200 473 + 9745104 TGGACAGTCAGATTCAATAGGAAATGAGA---CCGAATTTCCTGCCCTTGCAAAGCTT--AGGCCAGAG-----------------------------GACCAGGGGTAGGGGTGGGGGTGGGGGACAAGGAGAAGGGTG---------ATGTTTGGCCCCAGTGGCTTGAGTGCCTGTTCCTTCTCCAAGCATTGTAGGGGATACCAGAAGGGGTAGGACTCAGGCTTGGCTGGAAACCGCTGTCAAGTCTCAGTGATAGGAGAGTTTGAAGAAGAAGCTA--------CTTGAAGCCTCAGATAGAGACATAGCCACCCAgaagatggaagatggaagatggaagatgTATGGGACAGCTAGGACTAAGTTTAGATAAAACCTAATAAAAATCCCTAATAACTGGCTTGAAGATGATATACATTGTTTCACCTACATACTAAGAAAACCAAAAAGATCTAAGAGCAGGCTCCTGGAGAACACTAGGGTAG-----AAAGATGTCAGTGTCTTAA------GTCTTGCTCCATC s bosTau2.scaffold2934 8848 506 + 96106 tgggcactcagacacaacaaagaaacagagaggcaagttccctgccctcacaaagcctgcggtccagaggcgaaaattctgaacTCAGCCTTTTCGCAGAACTTGGTGGGAGGCAGCGGCGGGGAGCAGGGGCAGCAGTTTATTTCCGCATATTCAGC--------CTTGAGCACCTGTTGTTCTTCTAAGTGTGGT-GGGGATACAGACATGGGTGGAACCCAGGCCTGGCCGGAAATGGTTCACAAGCCACAGTAACAGAAGG--CCAGGGAAGAAACTGACTAGGGTCCTAGAAGCTCAAACAGGGATGTAGCCTCCCAGAACAGAGAAGGGGGTGAATATA---------------CCaggattcagttcagctataat---ataaaaaaccaaaataactgaattgaaaatgacaagctgtattttcctcatgcattaaaataaataaagagatccagaagcaggttactaggaaacggtggggtagctttcaaaggtgtcagggacccaagctgctgtcttgctctgcc a score=5885 s mm7.chr9_random 3269938 252 + 9745104 TCCTACCTGTAAGACCCAAGACTACTGACATCCCCTCTATGGACCTCAGCCTGTCCTTGTAAAAAGGAATTAGGACAGGGCCTCTTG--------------GGGAGCTGCTGTTGTGGAGAAGGGCAACTGCCACTGTAGGTGAAGGTTCCCATCCAGATCACA--CCTAGAGTAGTCAGGGCTGTGGCCTAGGAAACTTGGGGTGTGGCTGTGTGGGTGGTGGCTCTTAGGGCC-----TGGGAAGGCTCCGGTGCCAGGCTTCCCTGTGCC s bosTau2.scaffold72800 239 261 + 853 ttctgtctgtgggacctcagccaagttattctacccctgtgggcctcagcctattcctgtcagaggcggtcagGAAGAAGGCAGCTGTGGGCACAAGAGGAGGAACTCACTGCTGTGGAAATGGG-----GGTGCTGAGGCAGGCAGTTCCCACCTGATCCATGACCCCATGGGGGCCACGACTGTGGCCTGGGAAAA--GGGGTGTGGCTGTG--GGTGGTGG-TCTGAGGAGTGCAAGTGGGACAGC--AGGTGCCAGGCTATCCTGTGCC a score=4826 s mm7.chr9_random 3270190 97 + 9745104 CACAGTGTGTGCTGGAGGGCACTTCGGGCAGGACTGTGCCCAGCTCTGTTCCTGTGCCAACAATGGGACCTGCAGCCCCATCGATGGCTCCTGTCAG s bosTau2.scaffold34 640898 97 - 1037998 CACAGTGTGTCCCAGTGGCAGATTTGGGAAAAACTGTGCAGGAATTTGTACCTGTACCAACAATGGAACCTGTAACCCCATTGACCGATCCTGTCAG a score=4726 s mm7.chr9_random 3270287 66 + 9745104 TGCTTCCCTGGGTGGATTGGCAAGGACTGCTCACAGGGTAAGCTG--GCACCCCTGCAAGTGTCCCCC s bosTau2.scaffold2934 10482 68 + 96106 TGCTTCCCTGGATGGATCGGCAAAGACTGCTCACAGGGTAAGCTGTTGCCCCCCTGGGAATGCCCCCC a score=39004 s mm7.chr9_random 3270589 1637 + 9745104 TACATCAAACTTGA---GTTACTGGAACTGACCATGGATATGGTTA-CTGCAGGTTATTAAGG--------------GCATCAATACTGCCATTAGTGCTGTGAATCCTGAGAATTA-TACTCCACTAGCATCTGCCTATAGAAGATGC-----AGTCAGGATATAGAGGAGGAGGAGGGAACAAGACCGGTATGCTTGAGTTTGTGAATGGCAAGGCTAGCATAGCCACTCTTAGAAGAAGGGGAACACCTGTGGGATGGCCCCCTGTGAGTGATGTCCTGAACACCTTAGGCCTTAACATGGAGCTA--------------------CAGTCTGATACCAAGGTAACAACCCCTTCCCAAAGG---GGCCCCAGCCTTGGCCTAATTAATTAGCTCCTTGTCTAATGGGTGAGACACTGTCAGTACCTGTAAGGAGGTCTCAGTTAAATGGCCGGACCTGGAAGAATTCCATTTTGATGAAAGCCACAGGCTCCAATCTCAAACAGCACCTGAACCCAAAGAC----------AAGACTGGCCCTGCCACCTGTGGAGAAGTCAG----------AGCCCTTG------GTGTT---------------------ACTCCACCCCTGTCCCTGTGAGTCCCTCTATGAATGGAGGTGTAGGAGCCCTTCGAGTAGGGCTGCCTTAAGTCATCCAAGATTAGAATAGGCAGAGTCTGGTCTTCATAGCAATCCCAGGGGTTGAGGCCAAGAGGAGAGCTGATT-CTGTGACTAGTATA-TCAAGTCCCC-AAAGGCCAAGAGATGCCCCTCTGGGTCTGTCCAGGTGTTCTGGCTCTGATGTGTAcccacctc------cccttcctttcctcctgctccttt--gtcctgccctccccctctgcatcccacccaccccacccccacagcctgcccatcTGGGTTCTGGGGCTCTGCCTGCTTCCACACATGCAGCTGCCACAACGGGGCGAGCTGCAGCGCCGAGGATGGGGCCTGCCACTGCACCCCTGGCTGGACTGGACTCTTCTGCACGCAGCGTAAGCCCTGCCTCCCAGACACTCCCAGTCAT----------ATGCTGCAGCCTACTGGCCACTTTGCGAATAGCCCTGGTTTGCAG-AGAGGGAGGGAAGAGGCTGGCCCCAGG------------------ACCAGCCACACCTCAGGATCATCCAAAG-----------------------------------TCTTGAGAGGGCAAGGCTATAAGGGTATCCCAGCAATCAACCAGATCAGAC---CCTTGGAC-----------CATGGGGAAGAA-ATCCCAGGGCTGCACAGC--AGAGACCAGAGCTTGTCCTCTGCTGCTGAGG--CCCTAGTTGCATGGATAACCTTGTCCCTACCCTCCTCCCCTTTAGCCCAAGGTTCAGTGGGTACAGATGTCTCTGT---GGGCCTCGCTCGTCTTTATCCCATGCT------GCGCAGGAAGCAGCAGACCAGCCTGGTCCCAGCAACATTTCCTCAGTTTTCCTGAGCCCACACCAACTGTGACCTGTGGTCTTGTTGCAGGTTGCCCTTCAGCATTTTTTGGGAAGGACTGTGGGCACATATGCCAGTGTCAGAATGGAGCCAGCTGTGACCACATCACTGGGAAATGCACCTGTCGAACAGGCTTCTCTGGCCGCCACTGTGAACAGAGTAAGCTACCCTAACC--------------------TGGGAAAGTTGCTTCTTTCAACCCCATCCTCCCCATACCCAACCC-CCATCCAGGGTACTGGGCTC-CTGTATTCCAGACTTTGAGGACAACTTC s bosTau2.scaffold2934 10667 1732 + 96106 TACAGCTAACATGATGAATTCCTAGGAGTGATCACTGGCATTATTAACTGCTAGTTTTAAAGATATGAACATTGGTAATATCATTAATATCATTAATACTGTAAATGCTGCACATTAATAGTCC--TAGAACCTGAGCA-AGGAGTAGCCACTAAGTCTGGAT---GGGGAGGAAGAGGGAGCAGGA-----------AAGT------AAGGTGAGGCCAGGGCAGTCACCT---GAGGGGTGAGGGCATTCTCTGGGTAGCTCA-TGTGAATGATGTCCTGGGCATCACAGGCCCAGACAGGGCACTGTAGGTGCTGTAAGGTGAACCCAGTCTGATACAGAGATAACAGGCAGAGTTTAAAGGCAGAGACCCAGTCTCTGCCCTGTGGAGT----CCTTGGCTGATGGGTGAGACCCAGCCAGTACTCCTAGCAAGGTCCCAGTTAGACAGCCTGGCCTGAAGGCATTTC--CGTGCTGAAGGC----GGTGTCATCCTCAGGGAGCTCACCAGCCAAGAGACTCTCTACCCTAGGAAAATCCCCATCCTCC-TGGGGAAGTTAGCACAGTGTTCAGACCGTAAACCACGTGTTTACCATTTACCACAGATACCCACACGCTCCAAATCACAATCAGTCCCCAGA-GAGGGAAGAGTCAGAAACCCTCAGAGCTGGG----------------------AGAGTGGACAGAGAATCACC-----AGGAATCCGGGGTGCCTGGGTCAAGAGGTGACTGGAGGGTTGTGGCCACAGTGGTTAAGCCCCCTGCAAGTCAGGAAATGCCA-GCCGGGTGCATTGTGGCACCTGAGCTCTGACATGCActcccccttcctctccctccctctccgtctgcccctctctgccttgccctcaccctctgcatcccacccacccc-------cAGCTTGCCCACCTGGGTTCTGGGGCCCCGCCTGCTTCCACACATGCAGCTGCCACAACGGGGCGAGCTGCAGCGCCGAGGATGGGGCCTGCCACTGCACCCCTGGTTGGACCGGACTCTTCTGCACGCAGCGTAAGCCCCGCCCTCCAG--CCTCCCAGCTATTTGGAATCCCATGCTGCAGCCTGCTGGCTGCCGTGGGCATCGTCCGGGCCTGCAGTGGAGGGAGGGAGGAGATAGGTGCCTGGCTGTGAGCTAACCACTTCACCCTCCACCCCT-GGGATTGGCTGGAGAGGGTGGCTGGCTTCAGGGGATTGATGGGGCCCAATCCTGGAAGGTCAGGGCCATTA-GGTACCCCAGCAATCACCAAGACCAGCCACTCCCTGGACAGGGGGCCCTGAGTGGGGAAGAGCAGCCTGTGGCTGTGCAGCAGAGAGACACCAGCCTGGCCTCTGGTTCCAGGGCACCTTTGTCCAAAGGAC-------TCCCCACCCGCTTCAGCGTGAG-----GGTTGAGCGTGGA---GTGGCTCGGTGCAGGGTCTCACTGGTCTTCACCCCGTGCTCAAAGAGAGAAGGGAGATG-AGACGAGTTTGGTCCCAAT-GCAGATCCCCACCCT-----------------------------GTTTCTCTCCAGGCTGCCCAGCAGCGTTTTATGGGAAGGACTGCGGGCGTGTGTGCCAGTGTCAGAACGGCGCCAGCTGTGACCACATCAGCGGCAAGTGCACCTGCCGCACAGGCTTTACCGGGGAACACTGTGAGCAGAGTAAGCTGTCCTGAGCCCTGAGCCCAGGTGTCGATGCGGGGCCGCGGCCTCCTGCTGGGGAAGCCTGCCCCTTCACGGTCCACCCCTCAGGGCCCTGCACCCTCTGTTCTCTTGACTTTGGGAGCAGCTCC a score=20023 s mm7.chr9_random 3272480 1342 + 9745104 CACCTGGAGTGGGAGGGGTGGAGTGTGGCTGTGTCTCA-----CTGTCTACTTGCATTCTGCATGCCAAACAGGATGTGCCCCTGGAACCTTTGGATATGGGTGTCAGCAGCTATGTGAGTGCATGAACAATGCCACTTGTGACCACGTCACTGGTACCTGTTACTGTAGCCCGGGATTCAAAGGAATCAGGTGTGACCAAGGTAACATACAGGTGGCAGGGTGCCTGGACAGGGT---GGGAAGGGCCCAATTATGGGTGGCTTTGGAGAG-TTCTAACCAGACCAGTTGAGTTTTATGACA-----------TTACCTTTTATTCACAGTTGGGA-----------------------------------------------------------------------GCCTCTC---------TTCATAGCATTTCTGCTAATCCTCTGGTAGTTCCCCCATGAGCGAGGCAAGAGTGAACCAGAGGCTAGTGCTGGGAAAGGGCACCAGTCAGGCTACACTGCAACACTTGCCTAGTTGACTTCTGCCACTCCCTGCTAGGTGTCTCTGGGCAGGTCATTTCCT----CTGCTGGGTCTTTTACTCCACATTCAATTGAACAGACATTAACCTTTGT------CCAAAGGGCTCAA-----------CTTGACTCTAGCTCTATGCCTAGGTGACATTGCATGGTACAGCTGAGAGggatcaaatccagtcaattcaag-aaaggtctcagcacagtgcctggcacatg--tgagcactctgtaaatgatggctttgtACATGGGAAGTCCTTTTGTTTTGCAGATGTGGGAGGCTATTGTTGGTTTTAGAAGATGGGGATAGAAAACAGGCTCTCAATTACCCACATCAGACACACTTACTTTGCAATGTGAAGCTATGCAGCTCAGGCAAATGCAACATTGGCTGTCCTAGAAGTGACAACCCACTTTCTTTAGCCAGTAGCAGAGAACCAAGGGGGGGTCTAGATCCTGCACATTAAGAAATCAGATGCTTGCCAGGGCAGTCAGAGGGACTTAGCCACACATATATAATCAAGAGT-----TATCTTAGG-GCAGTAA-------CAGGCAGTCACAGAGCTACCAGCTGTCAAGGCCAGTCTATCATTTGGTGTTCATGACTCCCCAGGGAAGCTGGCGTTGCTGTCCCTATG-------------AACC-----TTCTaagtcacatggctggtagagcaggaagagtagcagaagccagttcttcctgactg--------------------aattactggttgggtgaacttagacacgtcccctaacctt--ggtgactcagtttacttatttTTTCCAACCATGTAGAAAGGGTAA--GTAATTAGTTCCCTT----TTTGTAGGCCTGCC--------ATGTTAAAGCAAGTAA------------CTTCAACTCTGT---GGACCTGAGTGGA-----TATTCAGCATTTAT--TTTGCTTCACACCTA-AATCACATTCTCTTCCTTAATTTAACCCTGAG s bosTau2.scaffold2934 13097 1350 + 96106 CATGTGGGATGGGCAGGGTGGAGAGTAAGCACATCGCAGGTCTCTGCC-ACCTCCA--CTTCATGCTTCACAGGATGCGCCCCAGGAACCTTTGGCTATGGGTGTCAGCAGCTATGCGAATGCATGAACAATGCCACCTGTGACCACGTCACTGGCACCTGTTATTGCAGCTCTGGATTCAAAGGGATCCGGTGTGACCAAGGTAAGGCACAGATGGCAGAGTTCC----CAGGGACTAGGAAAGGGTTCCATGGAGGGAGGCTCTGGGGAGATTCCAGCAGGAATGACTGAATTGCATGAGAACCCTTTGTGACTCCCTTTCGTTCACATCTGGGAAGAGCCTGGGAGTAGAATGGGGTGGGCTGGGGAGGGGTACTCAGGCACCGGAGAGGCTGATGGAGCAGGCAGCCTCTCGGGCGCTGCTTC------CCTCTGCTCATCCT-TGACAAGTCTTGCA--AGCCAAGGAAGGGTAACC--GCAGCTAGTGCTGTGGAAAGGTG--AGATGAACGAGCCGGAAGCACTGCCAGATTCTGGTCCTGCCATGACCCACCAGGAGTGCTTGGGCAGGTCACTTCCTTTTGCTGGGGGGTCTGTTATCCCCACGAAAAGTGGAAAGACACAGGGTTATGCTGAGACCCAAGGAGCCCAAAAGGGCTCATCCTCGGCTCCAGGTCTATGGTCAGACAAGACCGCAGAGTGTAGTT-CTAACGACCAAGTTGAGATTATGTGAGTAAAGGACTCAGTATGGTGCCTAGCTTGTGAGTGAGCACTGGATGAATGGT--------------------------TTCTGC----------------TGTTGGTTCGAGGACACAGGGAT-GAGAAGTGGCACACTAGCATCCACA-----------------GTACAGGAAAG-----------GGGCAAAAGACATTTCTGCTGCACT---------------------------------------CTGATGGGGGAT----------------------------------------------GGGGGCCAGCCCGCACACATATCTCTGAGAGGGGTGATACTTTAGGAGCAGCAATCCTGAGCACACTGGTTCAGCACTCACAGCTTTCATTGCcagtctgtgatc-agtgctcacag--------------tgggattactgtccccatgttacaaatgggcagaccgaggactcagagtcacacagctggtaaa-cagggagaggggctgaatccagcttttcctgactcctgagaaacccaactctaccagttactggctgtgtgatctcgagtaagttacctaacctttcagtgactcagtttcctcatttgt------------gaaaggggaatagtctttatttcttataggacttataaacatccctttgaggaatactaggaagagcaaatgggttattatctgtaactcagttttagaacaaagtaaaatactcactaaacacctgtgattTGTTTCCCATCTATAATCACATTTGCT-CCTTGTCATGACCCTGGG a score=151849 s mm7.chr9_random 3273879 7321 + 9745104 ATGAAGTTGGGCAAAGGCAG-GATGGAATCATGAGGCTCAGGCCCAGCTCTGGCTCAGGCCTCCCTCTGCCCACAGCTGCCCTCATGATGGATGAGCTGAATCCCTACACCAAGATCAGTCCAGCTCTGGGAGCAGAGCGGCACTCAGTGGGTGCTGTCACCGGCATCGTTCTCCTGTTGTTCCTGGTGGTGGTGCTGCTGGGCCTGTTTGCCTGGCGACGGAGGCGGCAGAAAGAGAAAGGCCGTGACCTGGCTCCCCGAGTCTCCTACACCCCAGCCATGAGGATGACCAGCACAGACTACTCTCTCTCAGGTCAGGCTATGCCCCGGGCATCTCTTCTT---------------CACCCATACAACCTGGCAGGAAGCATGTGGTCTTCTTAGGAACATCCACTTTCTCGTTCAACATGGGTGGTTATATCTGCAGATGGGTGGCTGGGCCTGGGGATGGTTACCCCAG--AGACAATGGGGACGGGGGCGGGGGGAGAAATCTGTGGCA--------TCCCAAGAGGTGTTGCTTCC-TGGAGCCCAAGTTCCTAGCAGCTAGGTCTGGGTGTCACTCTCTACTTCCCCA-------CCCCCCGCACACGGCTGGG-------------CATAGTAAGTAGTAACTTTTCTAAGCAACCCAGAGAACGGT-TCCGCAATGTGAAGCCAG-GGCACTT--GGTAAGAAGCTGT----------------ACCCTATCCACCTCTGCCTTCCCTGG----GAGGGTCTCAGGCCATCCCCA-------------------AGGAGTGCCCAAGAAGCATAGTGACAAAGGTGGTGCCTTACATAGGAGAGGTCTACAAGTTTGGGAAGTTTCCCTCTA-CCAGATATGCCAGAGCCCTGTGTGTCTATGTAT--GGTAGACATGCCAATGGGCATCC--TGTGGTAGTCTGAGTGAGGTGTGTATGGAAC---TGCACCAGATCCTTTGCTTTC----CCCTGGGCTGGTACCTTGA----AGAGAAAGCTTTGTGCTTCAAATTTAGCTAACCAGCAGAAGCTCCTGAACTGCCCTGGTTTTGGTT------------------AGGTCTGCCCTGTTGAGAGTGG--------TGC---CTTTCCA-----------ATGGCTCATAGCTTGCTTAATTTCAGAGTACCCAGACCAC------------ATGTGCCATTCCTGCTAAGTGTTGCCTTCTGTGTG-ATAGCTCTATGCCAGGAACAGGGTAGTAAGAGCTGGCCCCAATATAGACGATGCATTCAGAGACCTCCTAGCC----AGCTACTCTGGG-GCCAACCAAAGC-AACATCCTCTGATGAAGG-CCAAGGCTCGTAGAACTTTGAAAGTTT---------ATGACAATGAGCAGGAAGGGCTGGATT----------------------TTTCTCAGTCCTG-----------TAGAATCCTCAGAAGAGCTGGGGTCAACAAGAATGGAGTTCTCT------ACTTATTCCTAGGGTCTGAACATAAGGGAAATCAAGAGAAAGTCAATCCA-CCCAAAATAGCAACTTGAAGACATAAAGCCATTAGAGCCAGCATTCAGCAGCTTCCAGGTGACCATGCCAC--CCTATACTAGCAAGCCTGGTCCGAGAGCTGTAAAGAGGGTGGGCATTAGTAA--GAACAAATGCTGGTGGGCTCTCTCCTGCTTGCTGTAGTGCTAGTGGATGCCACACAGCTTGGAGGATGTGGGAAATTAGCTGCCT--CTTTGCTGGGGATACTCAAAATTGCATAACCCCAGCATTAGTTTGGGGGTATCTCA-ACCAAGGGCAGGTGTATGATGGAATATGGCTCCTTGTTCTCTTCCCAGATTTGTCTCAAAGTAGCAGCCATGCCCAGTGCTTTTCCAATGCCAGCTACCACACACTGGCGTGTGGGGGGCCTGCCACCAGCCAGGCCAGCACTCTGGACAGGAACAGCCCCACCAAGGTACTG------------------GCCCCCACCCACTATTCTCTCCATTTAGCACTCTCCTCTGCCC-AAGAAGGAACTGCAC--------CCCCACATAAAGGCTGTGTGGA---AATTCC----ACATTAAGAGCAGTCCTAGGACTCATGGGACATGAGAACCCTC----TGAATCACATAACAGGGAAAGAACATG---TATGGAG-----------------ACAAGCTC-TATCCCATGAAACCACACCACATTGCCCACTCATTGGAACATA----------CCTGTGCCTCAGG---TGTAGTTAACTAATACCTACCAGACATAGTAATAGTACATGTAGCCATCCTATCCCACACCTGTGTATACCATATGCCAATATATATA----------CTCACCAAGGATTACTGCAATGTATTA--------AGGTG----ATAGGC-------------TCATTATTCAATTAACCACTTGATGCCTCTTAAACTCGGGCA---TAAATTTCATCAA-ATACAC-----ACATCTGATGTGAACACAAACACTG----------------------------TAGTGTTCTTGCTGAAAAGG---------------GGAGTGGGGATGAAC---------CAGTGTCCCCCCTGACAGCTCCAAGCACAACCATAGTCATAGGACGGGTAGATGTCCTTAGTCACAAATATTACAAA-CGTTAGAAAGAGATGTCTTAGCACATATGTGTGCAGA----------TAGCATGTGGAGCATCCCTTGATGGACCAGTAAGAGGCAGAGTTGAGAGACAGACATCAACAGCCCACCAAAGATAAGGTTTGTGAGGGGTTCTTGCTAACACCCACCTAAGCATGTACCACACACACATTCTCAGAATGGCAGGACTATTTAGTGAGTGACAATCCCAGGATACCTGGCTTCCTGTACC-----ATCTATC-------------CAGGCCCAGGAGCTTAGCTTTCATATTTTAGGCCTCTTCCTTGCTGCTGAGAATCCTCCCCATTTGTTCC-CTGAAGACTGATCATCAGCCCACAGACCTG---------------------------------------------------------------------------------------------------GGGCT----------GCTTTTCTATGAAACAGGCAGGTTGCATGCAGGGTACCTAGAGATTCAATAGCTTTGGCCACTCTGCTTGCCATCTTCTACTCCAGATTCTTGTTTCCAGGCTCAGTGTGGCTTTAAGC----CTGAGGAACTGAGAGTAGAGAATTT---AATTGCCCAACAAGTAGCCCTTGA--GATTACAGCTATGTTATCATAGCTGCAACAGGCTAGAGGCACCA---GCCAGGGATGA---GTCAAAGGTTCCAGGCCATGTCATTATTTGTCTT------------AAGAGTCAGCCA--TTCTTTCAGTAGAC----GACTTAAGTTACTGCAGAGGAGGCCAACTGGTGACTCTCTGGTTTGGCTCACCTCACAGGGGCCAAGACTGGCCCTATGTAGACAAGAACCCT---CCTGGCGGATCATTTGCACAAAGGGTAGGCA----CGATGCCATCGAGGGGACA------AAGCAGCTACGATCTGAGTTCAAGAGCCAGCTTTGCTTCTGGCTCCTGTGTGTCTCTGAGTAT----------------------GTTTCCATGTCTGAAGTAA-------CATCCTTGCCTCACATAAAGGGCAGCTAAGAGAGAATGCAGGGAGGGTATTGTATCATG------------------------------TCACATGAAA--------CTCTCATATATGACCCAGGGGCAA-------GCAAGCACTGCAGGCAACCATA-------CCTCTGTGCTGGAGATGCTGTGTTACACATGGGGAACTGAGCCAGCCTCCTTTCCTGCAGCACAGCCCCAT-------GTCTGCTTCTACC------------------CATGTATGCCATGGGC----------------ACCTGAGA-----------------AATTGGTTTGGGCACATTCTGTTCTCACTGGCCTCAACTACAACATGATAGCTTGTCATGTAACATAGTATCTGGT-CATCC-----AGGGCCTGGAA--------GCCCAGGAGCACCTCAGGGATGGGTTCAC-TAAGGCTGGGCCAAGCACCAACTTGGGGAAGGGCA--GCAGAGACATGAGGTATTAACTGGGTCTC---CTCTCCAAACAGCTCAGTAACAAGTCCCTTGACAGAGACACAGCAGGCTGGACCCCCTACAGCTATGTGAACGTGTTAGGTCAGTAGTGGTTTGAGTCATCTTCCCCACC----AGTCCCACCCTGATCTCTGT-------ACTGAAGGGAG--CTGCCCCATCTCAAAATGAATG-----AGTTGAATCCTGAGCATGGTTTCCCCTGTGGTTAA-GTGTATAGGGAG----------------------------CACGTGGTTACGGCCCAGTGT-----------------AGGGATGGGCTATAGAGATT----CCCAGG-------------------------------------------TGGAAGCAGAAAGTTTATTT--------GAAAAAGAATCCTCTACCTG----------------------GCACTTTTCAAGGACTTCTTTCTTCTGCCCTA-----------------------GTAGAGGATGGAAT---GGAATGGGAAGGGAGGAGAAAAGGACAGATG--------------------CCCCAGCCCCTCT----------------GGGTGTTACATGAAGACCTTGATTCCTTCTGGCCTGCC---CCTCGCCCCATCCTTTGCTTCCCACC-------------CCCTTCTCCTGCCAT--CCAGGCCTTGGGAATAATGGCTCCTCCCTGTCATTCCTCTCACTAGACTCCCATTTCCAGATCAGTGCCCTGGAGGCCAGGTACCCGCCCGAGGACTTCTACATTGAACTTAGACACCTCAGCCGCCATGCTGAGCCACACTCACCAGGTCAGACCCCCAGCCC--TTCCTTCCACCC-----------------------TGAGAGCAGA-------CTGCTCTACACCCCATCCCTG-------------------------------CCCCTATGGAGCC---TTCCCACGACTAGTCTACAGCCCCTAGGCCCTACCCAAAGGTGGCAGTCTATCCCAGCCTTTCCCACTACCCTTTTTCCCCCACCATGCT-AGCTGAGGTAGACAAACTGGGGTTGCTT----GTAGAGGGGACACAGCCTAGCTAAATTCCCTCCATTTTGCAATACACAGCCCAA-----------------------------------------TCAT-GGTGTTGGTAACAGAAGGTTGGCTCTCTGGGCAAAAAAGCTCAATGGTTTCCAGA--AAGGCCCCAGACCTAACAGTGGCCCAAACTGCATCTTCTTAGAAAATGAGGCAGAATTGTCTAGCAGAGACCGGGA-----AAAGATAGG----------------CAACATTTCCTAGTACC----------------------------GAGAGAAGTGTCAAAAGACACTTGACAACTAAGTCCC------GAAAGGGGATATGTGCATCAGTAACAGAAATGAGTGTCAAAGAAATATAATGGATGGACGGAGAATGTGGCCTCTCTACAAAGTAGGTCCTCTAGGGCAAGCACTGCGGGGAAGGCCTCAGTATTCTAGACAGCTCT-GGGTTTGAGTTTAGGCTCTAGCTGAT---TAGTGTTCTAGTGAAACG-----GTGTCAACTTCCACAGATCTCTGAT----------GCAGGAAGCACGCAGGTTCAGAATTATC------------------TTGCTG------------AGTAGGCAT-GGTTGCAAGGACCCTGA-------------------------TGGCTGTGTGCTCCTCAACTATGGCTAAG--CATCCAATATCCCTTGGACTTTTAGTCCCTACCTTCACTCCACCTTGAGGTCTAAACAGG---------------------------AGTATGAGGCATCATCTGGGCTCAGCCCCAGTTCTCCTTGTCCCACAGACCTTCAACCACTGTAGCCAGAG-CACCACACTGTCATTTGTTAGCTCCCAGCCAGCTAGGCCGA-GGCCACTAGGAGAGAGTACC-----------------------------------------------------------------------------TCTGTTTCTTGTTTTATAAAGAAGGGGTGGTGGAGGCTAACAGTATA----CATACCCTCCTCTCTTCAATGATTAT-TATTAAGTGATAAATCCAGG-TCAACATG-----------GCTTGCTGCA----TGTTTTTTAAGGGTATGGGTTCCTACAGGCCTTTTAGAAT-----------------GGCTCGGTCCTGTTTTATCTCGCAGGAAGGCACGTAAGCCA---AGATAGATATGAACTCCTGCAAATTCAACATGGGAACTCTATGTG----------GAGGAAGGACCCAAGTATCAGTGGGTTTGTCTTCAGTGTAAAAAAAATGTAGGCAAGTTAGGTGGAGTC--AATATATTTTGGGACTGTTTTCAGTTAAAGACCAGGGTGTGTCtggttaagaacccatactgctcttggttcccagcacccatatcagacagctcacgatcacctgaaactccagaggatctaacacctctggcatccgtgggcacctgtactta-TGTGTA---TCTAGACACCATATA-TATCTTTGGGAAAAAAAACCAACAGAGTGAAGGGGTTAACTCTGAGTTAAACATTACTATCCCAACAAGGAAAGGCCAGA-CTTGATCCCACCCCTAGGAATACTTGTAGCAATCAACTCAAGTTTATGTCCTGATT-CTGTGCATCCTGGGAACCCAGGAAAAAGTTAACTAACAGCAAAATGAAGAAATAATTCTTTGGGGCTGAAAAGCACTTGCAGCATTTTTAGAACAAAGCTCTCCTTC------------TCCACCCTGTTCAAAATGAGTA------ACTCAGCAAACTGGCCGTGGCCAGGAGTGACTGTTCTTCCTGGAAAGA-TACTCATCAAATACCCCACCTACTTGT-TACTTCTCTCTGGCACCCCCAGATCCAG---------------------GAAAGGCAGGATCAGAGCTAACAGGTGAGAAA--------CCTTGTCTCCAAAGCCAAGAGAAA---GAATCAGAGCTCACTGCATCTTTCCCTCCAGTTAAGCACTGGCCTGGCTTCATCTCTTAACCCTGTGTCTCCAGAGCCTGGCACTTCACCTACAAGATCACAGATGGCAT----------------------------------CCCACAAGGAG----CAGGTTAAGAGGAAAGCTAAAGA-AAAGAGGGCCCTGGAGCCCAT--CTTAATGTGATGAGCCTTTTAAGAATCCCTC-TGTGTTCAGAATTATTTAGAATAGATTGAATGTAGAGCAGTCTGCTAGGAGCAAACAACTATTTTCTTGGTAAAAGAGGAAAACTGCACGGGGTAGAAGAGACACCGGTGGACTAGGT-AACCTCA-------CCCTGCATCTCTTTCC---TTCTGTTTTTATGCAGGCACTTGTGGAATGGACAGACGTCAGAACACATACATTATGGACAAAGGCTTCAAAGGTAGAGTATCTAATCCTGATGTCCTGTTACACAGGGCTTAGCAAG----GGATTATAGACCTGAGGTGGCAAGGAATGCTACCTGAGA-GAAACTGCAAA-------ACCCAAGCCCCTTAAAAAAACAAAAGCTAAAAGGATCACAGGACCCAGAGCCACTGGGCAGCTCTGCCCAGGAGGAACGATCCTAATAATAACGAATTCATCTTTCCATTGCAGTTGCACCTGCTTAGCAAACGCTTGTGGG-TTTGTTATAGATGCCAGCTAAATGTCTTCAGAAATGTAGATCATCATTATCCAACCAATTAGTATGAGTTAAACTGATTAT-AAATCTGAAATAAAATCAATCTGCCTGCCCCAGAGGCCTTCTGTCATTGTACTGACAAGGAAAACTACCCTGCACCTGCTGCCTTTCTGGGGCACAAGAAATGCAAATGATACCCAGTGTTAATACTGTATGGC-CCTCACCCTCAAGAGATCTCTGCGCCCAAGAGCAGGGAAGCCAAGACAGATGTCTACGCCACAGGAACTACATACAAGGTGGACCATTCCTCTAGGAAGTCTACAGGTGAAGCCAAAAAGCAAGCACCAAGTCCAGCCCCTGGATTAGGCCCTAGGTTT-AAATGCTGGGACACGTGAGCTAGGCAGGGAGCTCTGGAACTCTGTCACTTATTAACTCTG----TGCTTCCTAAGGTT--GTTTCTTCATCTGCAAGGTTGGGATAATTATGCCTGTTGACTCATGCCTGTCTTATTATCTAACAAGGTTATCTTGGGTGTCCAATAAAG---TCGGATGGGAAGTGCTTTTGTATATTATAAAAG-TGGTATCAATGTGA--------------TGTCTCTGGGAAATGTCTCAAAGTCTCAGTC s bosTau2.scaffold2934 14544 8393 + 96106 ACGAGCCTAGCCCCAGGCTGAGGTGGCCTGAGAGGAAGCAGGCCTGCCTCCGGCTCAGCTCCGCCTCTGTCCGCAGCTGCCCTCATGATGGAGGAGCTGAACCCCTACACCAAGATCAGCCCAGCGCTGGGTGCAGAGCGGCACTCAGTGGGTGCCGTCACGGGGATCGTCCTCCTGTTGTTCCTCATCGTGGTGCTGCTGGGACTGTTTGCCTGGCGCCGGCGGCGGCAAAAACAGAAGGGCCGGGACCTGGCTCCCCGCGTCTCCTACACGCCCGCCATGAGGATGACCAGCACTGACTACTCCCTCTCAGGTCAGACTATGCCCCCAGCACCTCCTGCTGCCACCCCCCCACAACATACACACAACCTAGCAGGAACCACGCGATATTCTTGGGGACCCCGGGTTTATTGCTGCAGGTGGGTGGTGGTGCCTGCAG--GGCTGGCTGCTCA-------GACTCCCCTAGAAAGAGAGTGTGGCGGCGAGCAGCAGGAGCTAACTTAGGTAGACAGGGCTCCCAGGGAGTGCCACTTCCTTGGAGCCCA--CTCTCAACATCTATGGTTAGCAGCCTTCTTTCATTTCTCCAGAGCTTCCCCTTCTCACTGGGCTTCAGTCGCAGAACACCCACACAAAGCAGTAACTTTCCTAAATGCTGCAGGGGACCCTCTCCCCAGCCTGATGTCTGCATCACCTCAGGAAACCAGCCTTGGGGCCCACCGTCCAAGCCCTGTCTCATTTTTGCTTCCTTGGAGAAGAAGGCCTCAGAGCACCCCTCCCTCCCAGTTCCCAGAGTTAGGAGGGCCTGATCTGTGCAGTG----------------AGACGGGACAGTGCTGAAAGCGTGGGCAATGTCCCTCGAGCCAGGTCTGCGGGAACCCAGCCTGTTCACAAATCCGGTACCAATGCCAGCAGGCATTCGATCTGGGAGTCCAA--GAGGTGGGGATGGGGCTCTTGGGCCAACCCTTCCTCTCCCCTAACCCTAGACTGCTGCCTTAGAAATAGAAACAGCTTTTTGCTTCATATTTCAATAAACTGAAGAGG---TAAAAATGCCCTAACTTTGCCCCCAGCCCTGAGCCACAGGAGGGTAGGCCTGTCGGAGGTGGGCACAGGATGCCAGCTCTCCACAGCTGGCTCCACGGCTCATGGCTGCCTTAG----AAAGCCCAGAGATCACGTCAGCCTGCTGACACGCCATTCCTGCTAAGTGCGGCCTACCATTTGCCCAGCTCTGTGCTACGCACGGCACATCC----CAGGCCCGGGCACAGACCCTGC-CTGAGAGAGCTGCTGGCCTGCGTGCCGCCCTGGGTTTCAGCCAAAGCTGAGATCCTCTGATGAAGTCCCAAAGCTTATGTA--TTTGGGGATTTTCTTCTCTGACCATAATAAGCAAGATTGGCTGGGTTTTCCCAGACCATCCCACTGGAATTCCCCAGCCCAGTGTGGAGGTCCTGGAATCTGCAGGAGGGCAAGG----CCAGGAGTGGGGTTCTCTTTACAGCCTCACTCCTGGGATCTGACCCCAGAGGAGG-CAGGGGAGGGTCAGCTCAGCCCTACACAGTGACTCAAGGATACTGAGGCTGTCAAACTAACACTTCTCA---------TGCTGGTACCACCGCCCACACTGGCA-------------TGTTGCAAGCAGGGCCAACACAAGCAAAGGGGCAAGT-----CAGGCTCTA-CAGGCTGCCAAGGGGAACAGTAGATGCCAGGAAGCTCGGGGGATG-GGGGACTTGGCTGCCTGACTTTGCAGAGCGCTCTCAAGGTGGC-CACACCAAGCATTAGCTTAGGGGTGTCTCGTGCCAGGGGCAGGGGTATGATGGTATGTGGCACCTTGTTCTCTTCCCAGATTTGTCTCAAAGTAGCAGCCACGCCCAGTGCTTTTCCAATTCGAGCTACCACGCACTGGCGTGCGGGGGGCCTGCCACCAGCCAGGCCAGCACTCTGGACAGGAACAGCCCCACCAAGGTACCGGGCCCCTGACTCTCCCCAGTCCCCATCCACTG-TCTTCCCACTGAGCCCTCCCCTCTGCCCGGGGAAGAAACTGCACCACCACTACCCTACCTAGGGTCTGCACGGAACCAACTGCCAATACAATAAACGGAGCCCTGTGAGCC------CACGTGTACACTCTATGTAAAGCGTGTAGGAGGAAGCCAGCAGGCTCTATGGAGCCAACACGGGCCATGCAACCAGCACACATCACATGTAACCA-ACCACAGCA-CCACTCAGTGAAGCACACACCCCACACCCTGTGTGCCAAGGCATGTGATCATCATGTA---ATCACACACAGCCTTGTCACACACAACCA--------CGTGACTACTTTTGCCTCATGTTAACACATATAATGAAAACACCCCACCACTCATCACTGCAGTATGTTACCAACACCACGTGTGCCACAAGCGCACAGAGTACTACCAGTACTCAGGT-GCCACCTGATATC-CTTGTATCTGGACACACTACATGTTATCAGTACACACCCACAACATATGTTGCTATCAGAACCACCACACGGGACACGGAAACATCAGCCACAGCCAGCGTGCCCGCTGACAGAGTCGGGCAGGACTTCAGGGTCAGGTGTGTACCACCCTGGACAGGGCCCTCCCTCACCGCTTCCAACACAGCGCTGGCT----GATGGCAAGACGTCCTT--TTACGTAAGTCACAGGCCCTCAGGCAGGGACGTCTCAGCACACACATGTGCTAACCCCTGCTCCCAGTATGCCAGGA--CCTATAATGGG-CAGAGAGGTTCAGAAATGAGAAACAGCCCCCAG-AGACCAC--AAGGTCACGCT------GCACGCATGCAGACATACAC---AGCATGGCTCACGGGGAGGT--TGGGGGCGGGGGGATTGGT---------ACAGTCCCAGGATTCCTGGCGTCTCGTACCTCTGTACCCACCTCTGGGTCAGAAACATGTACAGGAGCACAGTTTTCATCCTCCAGGCCTTAGAGCTGTAGGGATCATTTCTCCCCCTCTGCCCCACAGAAAAC--ATCCACAGACCACAGATCTGGTAGGAATGCATCCTGAACCCCCGCAGCAACAACAGCACAGACCCCGTACAGCCCCAAGAGCTATTACTGTCAAGCCAGCACCCAAAGGTCACTCTTCAGGGCTCTCAACTTCAGTTCTCCTATGGAATGGGAGTGCTGCATGCAAGGGACCTTGAGGTCCACGTG---------CAAAGCCTGTGACCATCAGCTCCAA---------CCCAGCTTCA---CAGCTTTAGGCCTATCTGAGGAGCCAAGGGAAAGGAATCCAGAAGTTTCCCAGTAGGAGGCCCTTGATTAACAAGAGCCACATTATCAAGGCTACAGTAGACGCAAGGCAAAGGATGCCAGGGATGAGAGGCCAAGTCCCTGTGTCCCTGTCATTCCTGGTCTCATTCTAACAGCGAAGTACCAGTCACCCTCTTTCACTAAGTCAGGGGGTAGAGTTACTGCAGTGCAGCCCACTTGGTGATCCTCTGGCTCACTTCACCC--TAGGGCCCCAAAGTGGTTCTGTGTAGTCAAGAACCCTCAGCCTAGCAG---ATGTGTAGCAGGGGCaagcagctgtgatgacgtggaaaggacatgggtccaggagctgagacctgaggtgtagacccagct----------cttctgtgtgtgaccatgcatagggcccacgagcaggactcaggtccccatctgtgaaatgagaacaacgatccttgcctcctatgaagggcag----gTGTGAGTGCAGGAAGAGGA--GTACCATAGGGACACCCTATCCCGACGCCTTCCCCTGCTCACATGAAAGGGAGACGCTCTCAGCTTGGATCAGGCGGCAGAGGGGACGCTGATGCTGGAGGCAGCCTCAGCGCCGCCCCCTCTGCTAGAGG-GCCATGCTGCAGCCGAGACACT--GCCAACACTGCCTCCCACAGCTCAGCCCCACCCAGCTGACCTGCCTCCCCCGCCAGGGCCAGCTTGGCTCAGGTCAGTTCTCGGCTCCCCTTTGTCCCGGGGCCTGGAAGCCCTACAGCTTCAGCCAGACAGCTTAGATATGCTCGGCTCCCACTGGGCCCAGCCACACCACGGTGGCCTGTCATGGAACACC-TACCTCGTCCATCCCCCCAACGACCTGGCACCTAGGTGGGTCAGGGTCATCACAGGGGTGG---CACACGAGGGTGGGCAAAAGCAAAGGCTGGGCAGGGGCATCTCAACGGCACTAGATATTAACTCGTTCTCCTGCTTTCCAAACAGCTCAGTAACAAGTCCCTTGACAGAGACACGGCAGGCTGGACCCCCTACAGCTATGTGAACGTGTTAGGTCAGTAGTGGTTTGAGTCTGGTCCCTGGCCTTCAGGCCCCGCCGTCTTCTCCTTCTCCCACATTGACAGGGGCCCTGTCCCAGCTCCAAGGGAGAGTTAGTAGATAAATCTTAAGCATGATTTCCCCCAGGAAAAAGGGGTGTGGGGAGGAAACCCAAGCCCCTACTTCAGTTCTCATAAGCAGATGAGGCCCAGGGCCCCTTTCATTCCTACTAGGGGGTAGGTGAGGGTGGCTGTGACCCAGGACCACAAGGGAGAAAGCTCGGGTCCAGGTGTGGGGATTCAGGTTGGAGGCAAAAGATGCTCTTACCATCTGGGAAAGGGACCCCCTGCCTGAGCCAGGCCCTGCTACCAAGGTGCCCCATTCAAGGACTTCTTCCCTCTGCCCCACTGCCCTGGTGACACCAATTTCTGTGGGGGGTGGGGTGAGGGATGGGGGTGAGAGGCAGCAAGGCCATTTGGCCTCAGCTCTAGCAAACCCCCCTGGCCCCACTGGCTCTAGGCTCCCTCGGATGCTTCACAGAAGCCTTAATTCCCTTCAACCTGCTGCACCCTGCCTCTTGTCCCCCCTCCCACCCCTGTGTTACGCACCCCTCCCCTGCCATACCAGGGCCCTGGGAATAATGGCTGCTCCCTGTCATTCCTCTCACTAGACTCCCATTTCCAGATCAGTGCCCTGGAGGCCAGGTACCCGCCCGAAGACTTCTACATTGAACTTAGACACCTCAGCCGCCCCGCTGAGCTACACTCGCCAGGTTAGACTCCCAGCCCTATACCCTCTATCCCCTGGACCCCTGAGGCCATCCTATAAGACCAGACCCACACCTACCCCAAATCCCCTTCCTATCCTTTCACCCACCCCATGGACCCAGAACTCTCCCTGTTGAGCCCCTTCCCTCCGACAAGCCTAGTTCCCCATGG--------GAAGAAGGAAACCCGTCT--GCATTCCTCAGT----CATTCCTGCTATCATGCTCAGTGGATACGTACAAACTGCAACTGGTTTTACGTGGAGGGAACAAAGCGTAACCACACTCCTTGCAGACCACGGAATACAACCCAAAACCACTGAGAAATGACTTGGGGATGGCTACATCTTTGGGCCCATGGGTGTGGATGACAGACAGTAGACT-----GGCCAAAAAGCCCAAAGTCCCCCAGAGGGAGAGCCCAGACCAAGCA-----------------CTCCTAGGTCAAAGGGCAG-GTGGTCCAGTAGGGATCTAGATCTAGAGAGGTTGAGGCCGGACGTGTCAACCAACATCCTCTGGGCCCATATATTTAGGCTCAAACCTGATAGCTTGGGAAAGATGCAAAAAGGAGACTGA-AAGTCAGTCCCTACTGTGGGAGGAGGTG-GGGTAGGAGTTACAGAAGTAGG-----------TCCAATGAACAAATAGAGAATGTGGGCCCCCAACAAAGTG---CCCCT------GCCCCTGAGG-----------GCACCCTGAACACCCGTGGGGCCTAAATTCAGGCTCTAGCTGGTTTCTAGAGCTCAACTGAAATGCAGCTCTAGCAACCCCTGCAGGTCTCTGGGTCCAGGGACAGTAAAAAGAGCAAAGGTCTGAACTCATCAGTTCAGACTGAACTCAGTTACTGAACTCATCAGTAAGTAGTTATGGGCTTCAGAAACCCTGGGCTTATACCCAGGAGGCTGTGCTCCCGGCTGTCAGCTCCTGGAGCAGTGCTCAGGACATTCAATAATCCCACAGAATACAATCCCCACCCCCAGC---CCCTGCAACATACACACACACAATCACCACCCTGCACCCCTTTCCACTTGGAAGCATCCTCTGGGCTCAGCCCA---TCTCTCTCTC----------TCAATCACTACAGCCAAAGCCACCACAC-GTCATTTTCTGGCTTATACTGAggtaggctggtaaacaacgggagggtgtacttcaggacatctgggttctacgtggagctcaacttctcacttggtgtggtctcagccaagtcactgcctttctttgagtctgtattctgttctataaaaagggggt---------tAACTTTTTAATAGCCTAGCCTCCATCCCTCAGGGAGGGCAAAGGAAGCCCTGGTCCCAGGATAAAGATGCCAGGGGTTCAGATTGTCGCAGTCCTATTTCTGAAGGGCACAGGTACCTATAGGTCCTTTAGAAGAATAGCGAACTTGAGAAAACTTGGACCTGCTCTG-CTCTCAGTACCGTGTGGAAGGCAGGGAGATAGGAGTAGGCTTCTGCAAATTCCACCAGGGAACTCTATATGGAGGCGGCATGAGGAGGTATCGGAACAGCCATGTGTTGGTCTTTGGTGT-CAGACACTGGAGA-GAGTTGAGTGGAGTCTAACTGTATTTTAG-----------------------------------TAAGCACTT-------------------GCTCCCTTGTCTAATACTGCAGCCTCAGTTAAAAGCTGGGGGGGAAAAATGGCTTTGA---CTGTGAGCTCAAGTCATTACTGTCCAAATTCAAAGTATCATATAGTTTCTTT---------------------------------TCTGGGATCA-----------CCAGCAGCGAAGAACCTGAGCTTGGT-----CCCTGAAGTTTCACGTCCTTCCTACCTCTGGCTGGTG--CTGAGGACCATGCATTGTGGGAGCCTAGGATAAACTGTAGTAGCCA-AAAGGGAAAAAAGAAATGCTTGGGATTGAAAAACACTGGAAATGTTGTTCAAAGACAACTCTCAATTATGTGCAAATAGTCCACCCAA--AAAAGTGGGGACAGGCGACTAAAAGAGCTGAC--TGGCTGGGAGTGACTGTATAACCTGTAGAGAGGACTAACCA---ACCTCAGCTGCCTGTCCACCTCCCTCTGGCTCCCCTCAATCGAGCATCAGACCCACAAGGGGAGCGACAGGCAAGACTAGAGCTATGAGGTGAGAAAGTCTTCACCCTCATTCCAAAATCCAACAGAAATGGGATTTGGAATGTCATACACCCTTCCCCCAAGCTGAGAACTGGTCCTGACTCATTCCCT-ATCCTACACTCTTGGAACCTGGAACTTCACTTG-GTGACTGTAGGTGGCATCAGAACTGCCTGTGATCGCCTCCAGAAGACATTCCCCTCAAAGAGATTACAG---AGCAGTAGTGCTAAATATGCAGGGGGTGACAGAGCTCACCACTTACACATAGGAGCTTTTTAAAGAACTCTCGTATGGTCAAGATGATTTAGAGGAGATTAAACCCCGAGTAATTTTCTAGCACTAAAGAACTATTTTCTGGGTAGGAGAGAA------CAGGAAAAAAAAAGAATACATGTAGTCTAAGTAAACCTCATTCACCTCTCTATTTTTCTTTCCTTTTTCTATTTTTATGCAGGTGCTTGTGGAACGGACAGACGTCAGAACACATACGTTATGGACAAAGGCTTCAAAGGTAGAGTATCTAATCATGATGTACCATTA-GGAAGGCTAAGAAAGATAAAGAATGCAAATCTGAAATCGCCAGGGTTTCTACCAGAGACAAAACTATGCATTTCTTCCCCTCATTCCCCCAAAAAAGTTAAA--------GACCACA-AACCTGGGACGGCTGGGTAGCTCTGCCCAGGAGGAGCAATCATAATAATAATGATTTCATCTTTTGATTTCAGTTGAACCTGCTTAGGAAATGCTTGTGGGATTTTTTATAGATGCCAACTAAATGTCTTCGGAAATGCAGAACGTCATTATCCTACCAATTAGTATGAGTTCAATTGATTATGAAATCTGAAATAAAGTCTATCTACTTGCCCCAGAGGCCTCCTGTCATTGCGCTGGCGAGGAATGCCACCCTGCACCTGCTGGCTTTCTGGGGTGCAAGGAATGAAAATGACACCTAGAGTTACTATTGTACGATGCCCCACCTTTACAAGGTCTCTGTCCCATAGAGCAGGGAAGCTAGGACTAATCCCCAGCACGCGAGAAC----TGCAAGTCAGATCATCCCTCTAAGAAGTATACAGGTGAAGCCACAGATGAAAGGTCAGGTCCTTTCCCAGGCTTGGGGCCTAGGTTTAAAATGAAAGAATGTATGAAATAGGC----GGCTTTGAAATTATGTCACTTATTAACTATGACAAACCTCTCCAAGGCCCAGTTTCCTCAATTACAACGTTGAGATAAGT--------------ATGCTTGTCCTACGGTCTAACAAGGTTACCCTGATTATGCAATAAAAATCACAAATTGGAAGAGTTTTTGCATATTGTACAGGATTATACTGATGTAACAGAGTTGTCCCTTTGTCTCTGAAATCTATTCAAGAATCTCAGCC a score=25042 s mm7.chr9_random 3281200 1208 + 9745104 AATTG--------AAAGAGCA-----------------GTAATAAG----TCAGCAAAGATCCCAACTGATATTCTAAATCTAGCTCTACACCAGAATCACCTGGCAAGTGTGTTCAAACTACAGAGCTTTACACTCACACAGATGGGGCCCTGCACTC----TGCAATTG--CAAG------GAGTACCTCAGGATATCTTTATGCATTTCATTACCCAAC-------TACCATTTGTCTAAACTCTCCCAGGTTTCTGTTCTGATCT---TTCAGACCTA------GCATGGCCATCTCCTAACCAAGGAGAGCAACTTGTGTACCACTCTTGGGGAAATGGCTATCAGAAGTGGGATGAGCAAGACCCAGGTGGCATTGA------------GAACATCAAGGCTGAGTGACCATCAGCTTGGTTTAGGATATGCAAAC------CCCAGGAGACCTGTCTGAGGA-GGGAGGCTATTCCTAATCTCCAAGCCAGCCCACAGGCAGTAATCCCCTGGGAGCTTTATTATGGCAAGTTTCTGAGGGTTCTGCCTTAAACCATCCAAATGGAGGCAAACATCATTTCAGT-----GAGGTTGCCAACAGAAGAG-CAATTGTACTACTGAGTCATTGTGACCCAAAGCCTCAGTTTCTTTCTCAGAGTGGAATGGGGAC--AACACAGCTCTTCCAGGGTCTTTGA-GGCTTTGAAAAGAAGTATGACTCAATGGAGAA-GAGCTCAGACAGGCCCTG--AGATTAGCATCCAAG--CACACTTCCCCATACACCTTGTCATACTGTGCATGGTGTTTCGGGTAACTACTTTTAAACTCTAAACCATAAATGTAAAACAAAGCCAATGAAAGCCA-GTCTCTGCCTT--CATCATTGCATTCCTGTCTTATGGGATCA------TCTGAGTGCATGGGAGGCTCTCACAGGCAAGCAGCCAGATT---TGTCACTGCT-------TCTAATCAGCTTTTAAATTAGAGAGA-------ACTGTGTAGGCAAATGTACCATCAAGTGCTGGGAGCCAACATGACACAGTAAGAGTTCAAAGAGAGGCAAGTGAAATACTAGTGTACAACTTTATAGAAAAGCTTATAAAACACATGGAAC-AATCCTACCTGGTGGCTAAATTCCCAAACATCTGGATCAGCTATTTCATGTCACCA--ATTTAAACTATTTCCTAAAGCATCAAGGGCAAGGCCAAACTCAGGACTAAT-----TAAAGAGTCTGGATGTTTTCCAAACTGTGAGGGACAGAGGAGGGCGCAGAGAATGAGATGATCTGGGTTCT-------------------AGTTCA s bosTau2.scaffold2934 23054 1302 + 96106 aattgaaTTTAAAAAAAAGCAACTCAGCCAAACTGAAGGTGATAAGACTTACAGCAATGATCCcagtggatatcctaaatctacctgtgtaccagaatcacctggaaagcttgttaaaaatatagatgcccacaccc-------tgcgtccccaagattctgatgcaatagatcaagagtgCTGAGTGCCTCAGGGTATCCTTACGTAGCAGATCACCGAACACTTAGAAACCACTGGTCTAGACTGACTCAGATTTCTCATCAGATTTAGCCTAAGACATACCTAAGACACAACTATTTCCTAACCAAGGAGAGCTGGTCATATACAGCCCTTTGTGGGGTGGTTACTAGAAGTAGGGTGTGCTAGGGGCGGGTGGCGGTGAGCACTGTGTTCTGAACAACAGAGCAGGAAGAACA--AGTCTCCACCAGAACATGTATGTGCCCTGCCCAAGAGAACTATCTGAGGACAGGAGGCCACCCATAGGCTCCTGGTCAGCCAAAGAACCCTACCCCCTTGGGAGCATCATTCTGGC---TTTTTTTTTTTTTTGACTTAAACCACCCGAATGAAAGCGAGCACCATCACAGTAGATGAAGCTAAACAAAAGAAAAGACAACTATACTGTTTCATCACCGTGATCTtggacctcagtttcttc----aagaggcatggggactggacaaacctctctacgggcccttgacagctctgagaatacccatgactcAAGCCTGAACGAACCCAGACAGGCCCAGACAGCGCAGCACATGAGCACACACTTCCCAACGCACTGTGT-GTCCTGCACACTGT------GGTAAGGGCTGTC--CCTCACAGCCACGAACGCGAAATGCAGTTAAGGACAGCAGTGTCCCAGCCTTGGCGCCA-TGCACTCCTGTTTTGTGGGATCATCCGAGTCTGAGTGCAGGGGAGGC-CGAGCAGGCTAGCGGCCAGGTTTTGTTTCACCACCCTATAAATCTGAT---CCTCTAAATTGGAGAGAAAAGAGGACTATATAGGCAAATGTACCAAAAGGTATTAGGGATCCACACACCAGA----------AACCACAAGAAAACAAAATCACAGGTCAGAGCTTTAC------GCGTATCAAGGACATGGAATAAACCCCACCAACTCGATGTCCCCCAAAAAACATTCAATAAACAAGTTATGT-ACCAGGAGTGCAATTGTTACCTAAAAC-TACTGGGCCAGACCAAA-TCAGTGGTTATCGGGGTTAAGAGTATTAGTGTTCTCTGAACTCAGTGGGAAAGAGACCTGATCTGGGAGTTAAAAGATTTGGGTTCTGTGGGGGGAATtccctgacagtcca a score=15812 s mm7.chr9_random 3282408 1076 + 9745104 ACTGCATGGTGCTCACTAGA-CACAGTAGTAtctg-tgggtcttggcttcctcctctttaaaaagcacagttataatagcaccaccgctaaggccccttacaactctgatggtttaAA---AGCCCTAACTCGGGTAGCATCCACTTTTTTCT-CTG-TAACTGGGAACT--------CTGTCACCCTGAGAGGTTGAAGGAGACTGCTGACACAGCTAA------------------------------TCACCTTCCTC-------CCTTCCACAATATGACTGTACAATAAACTGTCTAGGGTCCAATTCCTTGTCTGTCATGC-TTTCAAAGTGTGACAGAAAAGA----ATTCACTTCTCTTCACCTTCCATCT--GGGGATCCCTGA----GCTGC-ACTGTCATCCCCCCAGCCTGTGCTCCCTTGCCACCTCAG-CTCCATGCCTCTCC---AAGTAATTTTGGTTTCTCAGACATTTAGAAG-CCACTAACATCCTGAAAACTCCTTTTGTGGCTGGCCAGTATT---------------------CTCTGGACTTCAGATCCCCTGTCCCA---TCCCTCCTCATATCCTCTCTCTCATTGAAGAGAAGAATGCAAACTTA-ACCCTAAGGACAGAACCAGCAG-GCATCCTATTGATAGCATTA-GCTCAG-AGGTGAGCAACAGATACTTAATGCCTGGGTTTCCACATACATTTGAATA-------------------AATTGGGGCTTA---------------------------------------------------------------------------------------------------AAAAAGATAGCAAGCCTC-----------------------------------------------------------------------------------------------AATAGGTTCAGAAC--ATCCATAGAGCAACTTTGGGAAGTCATTTCCTCTCT---AGTCTTGTGCTTCC-TCAAAAACTAAAGATGT----------TCATTTCAGAAACCCATTCTGACTGTGATAATATGCATGACTACGTATGGTCC---AGAGGAGGAAATAAGGAGAGTA--AATGCAGGGGCA-------------------------------------------------CTTGG--AGCACTGC---AGGCTTCCCCTTTCTTTGCACAGTGCCCAGA---CAGGAA--GGCACTGGAGTGGGCGTGTCTGTGAAAGGATGAGGAAGTATTCTAGCCCAGCTGGTTATTTTTCCCCACACCCTG----CCCTCATAGCAGGCAGGTGGATGACTCAACCAGAGAAAAGCTTGGCTTCCTGAAGCTGAGTTTCCCAGCTTGCCTTGCC---CCATCTCCTCCAGTTCTCAGGAAAGATGGGATAATCCAG s bosTau2.scaffold2934 24491 1430 + 96106 gctgtgtagcaccgattagatcacggtgctgttttctgggtcttggtttcttcctc---------------tattaggacagggtctctaaagccctttccagctctgacatgctaaatcttaacgtaattcAGTCAATGCTCCCTCTCTCCCGCTACTTCCTGAAGACCTCCCCTCACTGTCACCCAG-GAGGTTGCATGAGACCACTCATACTGCTAACCCCATTTTCTCTCTAAACACCTTTCCATCTCTCCTTCCTCTTCCTGACCCTCAGCACAATTATTCCCCAACAAACTGCTTCATGACAA--CACTTTTCTGTCATGCATTTCAAAGTGCTACAGAAGAAATCCTCCCCACCGGTCTCCATCACCCTTCTCCTGAAATCCTGGGTCCTGCTGCTGCTGCCGCTTTCCCCACCTGTATGCCCTTGCTAATGCAACCTCCAGGTGTCTCCTTGCAGTAACCGTGGCTTCCAAGCTCGTCAGGAGCCCACTGACATCCTGAAAATTGTTTT------CAGCCAGTTTTTTCCCCTCCCTCTAGTTCTCCTTCTGGCCCTGAGATCTC----CCCAACTCCTCTCCCCAGTCCTTCTCTCTCAATCAAGAGAAAGGTGAGAAGTCAGGGCCCAGGAAGAGAAAAGGCAGTGCAGCCTCCTAATATGAGTAGGCTGAGAAGAAGAGAGATGGGTATTTGGTGCCTGGGTTTTCAGCAACAGTGAAATATTGGCCTTAACTAGATGATAATGTGAACCTAAAGGCTGGGGTTgggtttccctgttgaatcaatgttaaagaatctgctcgccaaaccaggagaccaggttggatccctggatcaagaaatcccctggagaaagaaatggcaacccactcccgtgtttttgcctgggaaattccatgtgggctatagtccatggcgttgcaaagagtcggacacaacttagtgactgaacaACAAAGGCTAGTGTTAAGTTCAAATCCTactcacaaggtggccttggaaagtcatttcccctctctcgatttgctgcttccattataagatgaagatgtttcaaccagctcatttcagagaccccttctgcctctgata-----tGTGGCTGTACGTGATTTGGGAGAGGTAGGAACTATGTGAGTAGCAGTGCCAGGGCATTACAGGGCTACATCTGCAGGCTTGATGCTAATTACAGGCCTTGAAGAGCTTGGGTAGCCTTGCTTGAAGCTTCCCTTTTCTTTGCAACACGCCCAAAGTGCAGACACTGGCACAGAAGTGG----GGCTATAAAAAGATGAGGAAGTGTCCTATAGCAGCTGGTTATTCTTCCCCTTGCCCCGCCCTCCCTCAGGGCAGGCAGGTAGATGACTCATCTGGAGAGAGGAAGAGCTTCCTGAAGTATAGTTTTCCAGCTGGCCTTGCCCTTCCCCTCCTTCCAGTCCTCAGAA------GTAGAATCCAG a score=3612 s mm7.chr9_random 3283782 254 + 9745104 GAAGCAGCCATAAAGAGCTTAGGTAACTAGATCTCCTAGGGGGGGTGGGGGGAA----TCTTGATTT----TCAGATAAGATAGTGGTTGAGTCCTAAGCACTGAGCATTAGACTAAC--AAATAGCTTTGGTTTCCTCATTTCTAGA-CAGTAATAGCAGTCCTGTCCTACCCAGGGCCTCACCCCCAGCTTCCCAAAGTACTAAGTTTCTttctgtttggtttgag---------acaatgtctctcactataaataaagtcctggctagcc s bosTau2.scaffold2934 26579 246 + 96106 gaagc--ccATAGACAG----GGTAACAAAAT------------GTGAGGGGAAAACATCTTGATTGGGTATCAGAGAAGGTAGGGGTTG--TCctaacttactaacattaggcaaacttcatgagctttagtttcctcatttctaaagtagtaatactagtcct-tactgcct-gggccccctgcacagatgtaacaagaatcaaatga---tctaactggagtgagcggagcccagcaatgtgt---gctataaagcgagctatcattaaTC a score=3354 s mm7.chr9_random 3284098 386 + 9745104 CCTCCCAAATCACACCCAGCACCTATGCTTCAAATAACCTAACTGGAATGAAGGTCACTCATTCCAGTGCTACACAAAATAAGCTATCCCTCAATTCCACAAGGTATGCAATCAAGCCTTGA-GCCTCTCTCACTGCCTGATGAGTTTAGATCAACCATACTGGAACTGACTGG------GAGGCTCTCAGGCTTATATCACTCC------CCTGTACTAAGGAAGAAC-------TGAGAGGCAAACTAAGGTAGATGGTTTGAGGCAAGTCACAATGCAGGACCCAGGGC-ACCTTCTTCT-ATGTAGGCAGGCATCTACCAGCAGAAGTAGAACCTATTTACCTACCTTTCAGTCCTAGCTAGAACTGGCTGAGAATGTTTGTTATCTAGCAAGAATGCTTTTTC s bosTau2.scaffold2934 26913 335 + 96106 CTTCCCA---CTCAGGCAGCAGCCCTTCTTGAAGCAAC---ACTGGAAGG--------------------------------------CCTCAGCTTCC--ATGTGAGCAGCTGAGTCATAAAGCCTTACTACTTGGCTGGGAACCTCA----------AGTGGGAACAGCTCGCCAGCTGGGGTTCTTGGACTAAATTAACCCCAATCCACTTATACTAAGGAACAAAGTATTCACTAGAAGCAATTTAATGTGG-----CTCAGGTAGGTCATGACCAAGGACCCACAGCCACCTTCCCCCCATG------AGCACCT--CGCCAGCAGTTAGGCCAATCCAGGCTCCCTTCAGTCTCTGCTAGGGCTGGCTGGGA----CTGCTATCTAGCGAGGACGTTTTCTC a score=5809 s mm7.chr9_random 3284569 192 + 9745104 TActttgttactgagaggcagtg--ggaccctgaggagtttactttcccactctaagtttcaatttcttcatAAGCACTGAGTAGGGAGAAAGGGGAAA-----GTGACTGATCTACCTGTGCCACAGCTTTCTGAACTCGCAGAAAACAGTTGAATGCACTTCTACACAAAACCAAGGAGCTGTTGCCTGCTCGAACA s bosTau2.scaffold2934 27679 182 + 96106 tactttaataccgacgagcagtgtgggaccctggggaagtcacttccctattc-aaacctcaatttcctcataagca----gtaaagcggaaggggaaataataattacTGCTGTGCCTACGCTAGAA-----GGAACT-------AATAGGTGAATGCAGTTTTGTACAAGATTGAGGAAACGTTAATTGTTAAAACA a score=159924 s mm7.chr9_random 3284797 4985 + 9745104 CCTGCTGTAGAA-CAGACACTCGGGGTGGCACACATCACAGTTACTTCAGCCA-----ATTGCACAGC------------------CAGTT-CCCCTTGCGTCATATGAC---TTTCACTGTTTAACATTCACAGTAAAGTCACAAGGTGG-GGCTGGGAGCTTAGT--AACAATAGCATGAAGTGTAAACTGTGGTGGTTGTCTAG---AAGATTCCCTAAGAATTTCACCAACTGA---CTTTCACAGACATTTAGAGGTGAGAGGG-------------------------------------------CTCTTAGGTCACACTTGACTGTCAAGCTCCAGCCATTCAGG--TTATTTCCAGA-CACCTTGCCTCACAG---CTA-----AGGGTCACAACTGTTAGATTCA--TTTATTGTTTTTTCCAGTCAAGTCCTAGAATTCGTAGACAAATCA---------------TTACCCTCAAAGGGAAGGAGAGTAGCAA--TTGAAGGAGGGACTCCCTTCTTCTCTGTGACTCCAAGTCACTAAGGGACC----------------------ATCACTTCATCTCATGTT--GACATCACTCTGCA-----------CTCACTGGACTGGG---------------------TGAGATGAGCTGAGA-----------------------------------------CAAAACTA----------------------------------------------------------------------------CATTTCAAGGGCCAACCTGAGACT--GGGACTTTTTACAGCTGTTAC--TTCAGTTAGCCC--ACTGGAAGCATGAGCTCCTGGAAGGCAGGGATGCTGCT-----ATTTGCTTAAGGCTGCTAAACTGTTGACATTCACACTGAAAGACATAGACGCTGCTGCTTCTGAATCAAAGCCTCTAGTCGCCA----GGACTtggaagaatgatagtacagaaaatatg-gggcaaagacgtcccagagcatagatttaagttttggctctgcagtgctta-gc------accctagccaagttactgtacctgtctgggcttcCACCCCCTATGAGGCCAGAGAGCA----------------TTTGTATAAGTCAG-TGATACATGTAAAAATACACTGTGAATATCCTGAGCTA----------------TTATCTAATGACAATAACCAGCCATTTTCTTGTCCTCCAAAAACATGTTTTTTGAGAAAAGAA----------TGCCTGAAAAAGCATACCTTAAGATATTTAATAAGATTTAATCTTTTAGTATGACTGTCTTCTCCAGCCCCAGGATCCTGAAAGCACACAAAGTTAACTGATGTCTATTTCTGGTATTTAAATGAATCCTATGTCCTTGCTTGTCCTAAGAAATCTCTCTTGCCTTGCAGATTACATGAAAGAATCTGTGTGCAGTTCTAGCACTTGCTCCTTGAACAGCAGTGAAAACCCTTACGCCACAATTAAGGACCCACCCATCCTCACCTGCAAGCTTCCAGAAAGCAGTTATGTAGAAATGAAGTCACCTGTGCACTTGGGGTCTCCGTACACAGATGTGCCATCCTTGTCGACATCTAATAAAAATATATATGAAGTTGGTAGGTGTCTCACA----TAACTTAGCAAAACCAGGGCAACAGTGCAGCATCTCAAGTGAAAACAAGCCCTCCTCCACACACTCTATCTCCATACCACATCCTTCTGTTTGGTTGCATTTGAAGGAACCTGAGGAGAAAC-TTTGTCTCAGGGTTGCCCTTCCCTCTAATGCAGGAAACCAGAATCTTGTGCCACCT----TGCTTACAAATCACAACTGATAAAAGTAGAAAC------------TGTGAGGGTGGAGAGCCAGTATACA-----------------------ACACTTCGACT-ACTGTTAATACAAATCCAAAGCGGAAAACGAAAACAATCAGAAT-GGCCGTTTACAAGTTTCTAAATCACTTC-----------------TTAAACC------------TCCCCCAGTAAGACCCACACCTCTAGGAT-GTCTTGAATCTCTTGTTGTTGAGCAAA--CTAGGATTCTGGCAGTACACTGTCTTAGGTTTTTCCCTCTCTTAAGCAAGCCTCCATCCTAATCCTCCTGGATTTGTCAGATGTATACATATACCCACAGTTTTTCTCCCCAACAAGTTAAATAGAACTTTCTTCCCT--CCCACCAAGGCAAC-AATGCTAATCTATTCTCTGAACTCATTTTTCACTATATTCCTTAGAGCCCACAGTCAGTGTGGTCCAAGAAGGCCGAGGTCATAACTCCAGCTATATCCAGAATCCATACGACCTACCTAAGAACAGCCATATTCCTGGTCACTATGACCTCCTCCCAGTAAGACAGAGCCCTGCCCATGGGCCCTTCCAGGAAAAGCAG---TAAGAGGGATAAGCGTCTCTCTT--AGTGTGCTCTGCTGACTATTTTCTGA--CTCTGAAAGAAGACAATCCA-TGACTTGAAATATCAGTACAGAATGCCTTGAGCTGTGTGTTATTAGTTCCTTCACCTGGATTGAAAGAAACACTTCCAAACGGGACTGGGGTAACTGTTCAAGAAAGTCTGTTCACAAAGGCAAA---TCCTATCAAC---CTTTCAGCTCTAAATGTCCTGGAT---ATGATTTTTCAGAACATTAAAGATACCACTTTTCATCAGCATCAGCTAAA-----AGCTATGTATTTA-------------------ATATTCTGAAACAT--CGCTTAAGAAGCATGTAGCTTAGGTTCCTCAAGCCTTCCAAGAAGGAAAAGGAAACTGGGAGGGGAGGGGG-CACTT-AAAGTGCCTGAAATGTGTATGTGCTGTTGATTGTTGTTATCCTCAA-CATCTGTTTCAGTATCTAAGGGAATTGGTATGTGGGCATGAACTGTTCTAATATTAATCTT--GGTCTCTGTTCATTTGGTATGCC----CCAGCAAATTATAACAGCCACAAT--CAGAGTTTAAAATATAACCTAATT--------------------------------CTTTAATCAAGACAGGTTCACT----TTCTTCTGCCCTATCAGTAATAGTAGGCAAAACAGAAAGGGGGAAAAGAGCAGCAGTTTCACTCACTCTAG-AATGATTTCTATGCCAGCCTTACCAAATTTTGCCAAGTCAAAGTTCAAGAATAACGAATGCCAATCCTGGCCTGGCTGCATTGCATTGGTTCACCCAATACTTGAGTCATTCTGTGTGCACCAGAGAACTAAGATGCTG-TTTTAAGAAAATGGTCACAgggctgggaatgtagcttagtggtagatgttcttgcctactgagcaaggacctgggatagatcagcagcatcatataaaaGGCATAGGCTTATAATGAAGTTTCCCCAACAAC-ATAATTAGATCACTCAAGTT--ACTTAGTCGGAGTTCCTTGACT------------TGTTTATGGGCAGTTCTTCATAGA--TGGTGCTTGATGTAGTATGGAACCTTAAGGTGTAGAAAATATTACAC--------------------------------AAATGTGGGCATGGCACACTTATGTTGCTTAGCATACATTATG-TTTTTGATGCAACTAAATGAAATAAATGTAAAACAA-----AACAAA------------AACAAAAAAACATAA------------------------AAGC-CCACCGCCTGAAGTGGGCAAATATGTATTCCATTAG-TTGGTGCTTTTAATCTCC-TGTCCAGAGAAGTCCATAACTTCCACTGCACAGGTAACAATAGGTAAACGGAGGCTTGGACAACTCTGAATGGT-TAATCCCCAAA-------------TTCTTCACAAGAATTAAGAACAGAAGGGACAAGTT--GGAAGTTAATGGTCACCTTTGTGCCATCCCATGTTCTTAAGAGGATTAAGAGTCTAGAGTGAGTAAAAATTACCT-AGAAGGGGTTTACAGAAGAGGGAC----------TAGAAGACTGTAAAGCTAGA--TACTGCTACAGGAAGTAGGG-------------------------------------ATGATAACC-TTAGTTTGAGTAGTAATCAGCAAAAGAGAGAAAATAAATATGTAAGCAAATCTCTGCTCGTTTCACTCCAGGCATAAGCCAGTATGAC-ATTAGAGG------AACACATACATGAATGCTGCATGTGTGCATGGAAGCGAGCCATCAGCAATAGTGA----ACGCTCCCAAAAGCCTTA-TAAAATAGAAACAGTAGGAAAT--ATTGGTAGACCTAAGTTAATATTTCTCATACATGTATAAAGAAACGTAGTGAAGAGACTCACCTCAGTGTTTCAGGGCCACAAGTGCTCTGTTATCTTTGTGAAGCAAGGATGAAGAAGCATGGCGAAGTCCAACCAGCAAGCAGAAATGGCGTCTCAATCCCAGGCTTTATCTTCTTCCCCTACCCTGCATGTACAATAACTGCTACCTGGCAAACTGCA----------ATCATGCAAATTCCAAACCTCACTTCTCTCTTGCCAACTACACTCTGCACAAAGTACCCAGCAAGAGGTGGGATG-------GCTAGAGCAGCAAGTCAAGAGAAGTTGGCACCACTCTTGTTGAGTCACTTGCCCTCTTCGGGCTCCTTTATTACCCACACAT---------GAAAGAAGAGAGACACAGAGTGGGAGCAGAGCTCTAACAACTCTCCAAGTGTAGCACTCTACAACATTTCAAGTAACATAGTTC------AGTCAGGCTATACA---GAGAAGGGAAAGGGCAAAGATGTGATTAAG-TATGGTGACAGCAGCAGCCTTCACATAGCTAAGAGTTAGCACT--AGGACATTTCGATCATGCAGAGCAACTGTTAGGAACTTCTGTCTAACA--ATCACAAACAGGTTTGCGGTCAGCCTCAACATGTGCGCTGTGCATTCTATAGTCAATTTGGAAAGATCTGCTCAATTATTTTTCAAAACAAAAATTTCAATCCAGTAAATTAATATGTATACAAGTCAGACAAAGAA----AACACAGATACTGTACAATAGTGTGA-GAGACTATGAAATGGCAATACTTTTTTAAACCA--CAGATTTGTAATATATTTGTTCACTGTGCAGAGGA--TGTACCTTATACAAAATAAAATGGA-TTCTCAAACTAACATTACAAGAATGCCTACTGTTGTGTTGCAAACTGAAAATCTA---------TACATTTTATGTTTAAGACAATACTAAACCCTCATTTGGTATGGTTACTTTAAACAGCTGGAAGAATGAAAATTACCACAATACATGTTAGAAAAAGGA--------------ACCAAAGTGTTA---------------TTTTTAAAATAACAAATGGGATCTCCTTAACTCATGTT----AAATATTTTAAAATCCCATTCACACCAGTATTAGGCTC---------------CTGTTTTTCCAAGAATGTGTACTCAAGTACA----------------------TCCCGTGGCACAAAG-----------------------GGCAAGTGTAAAAACTACCCAATGTATATAAATCCAGTGAATAGCTTTTAACTAAGAGATTTTAGCA-------------------TGTGTCCACTTTAAGACATTTTAAACCAAAT-CTTAAGACATAGCTG s bosTau2.scaffold2934 28117 5662 + 96106 CCTGTTGTGGGAGCAGACTCCTGCGGCGGCACACATGTCGGCCACTGCAGCCACGTGGAGTGCCCTGCTCTCCCTGGAGGGACCTCCAGTCACCTCCTGAATTACATGACCACTTCCACTTCTTTACATTTTTATTAATTTCACAAGTTGGAGGCAGAAGGCACAGATAAAGAGCGGCCCAAAATGTAATCTATGGTGGTT--CTAGGGAAAGAGCATCTGAAAATTTTACCATCTGCTACCACTTATAGAAATTTAGAGCTGAGAAAGAGAGAAATTTCACCATCTGCTACCACTTAAAAGAAATTTAGACTTCTAAGATCACTCTTGACTA--AAGTCCCTGCAACTCAGTGCTTATTTCTAGAGCCCCCTGGCTGGCAGAGCCTAGAAGGAGGGCCAGAGCTGCCGGATTAGAGTCTTCTGCTTTTTCTGGGCAAATTCTGCCACATTTGAAACAATCAACAGGAGGCAGTAATTTTCCCCCAAAAGGGAAAACGGCAGAGAGACTGAAGGAAGGGTTCCCCTTTCCT-TGTGACTCCCAGTGACAAAGAAAACCTTCTTCCTCCAGGGAGCTACAGTTACCTTGCTTCATATTTGGAAATTAGTTTGCAACCTTTCATACCCTAATATACTCGGAAGTCTTAGGGATGACACACCTGAGAGACGCTAGGAGAAGCAACGTTGAGTTCTCCCGGGATCAGAAAAAGATTCTGCAAAATTAGACTTCAGTGAGCATTCACAAGAACAGGAGTAAGTGACCCCACAAGATATACTGCAGGCTTGCTAGAAAACAGGAACTTTCCAAAGCCTCACTTGAAACCAAGGTACTTTTTAAACCTGTTACACTTCAACCTGCCCTGCCTCTCATCATGAGCTTCGCGAGAGCACGGGTACTACCCGTGGGCTGGCTAAAGGTTGCCAAACTGCTGACACCTGTGCCGAATCACACAC------CTACTGCCGAACCTAAGCTT--GGTCGTCAAAAAGAATTCAGAAAAAtgatgtcacagaaaacacacaagccgaggagtcccgaggcctggattcaagtactggcactgccatgcatgtgccatgtgacctcagccaagtcacttcagctccctgggccaccatcctctaaaaggcaaacagtcaactatcctggcaggattttgtaaaaattaaacaacagatgtgaaagcacATTATGAACATCTTGAATTAATCCCTTTCTGATGCTCTGCCTGACTACTAAAACAAAAAAGTTCTTATCCCCCCCAAAACATGTTTCTTTAAAAAAAAAGAACTCTGCTTACCTCAGAAAGCATTTCTCAACGTAGTTAGTAAA--TGAATCTTAGACTGTCATAGGCATTTACAACTTCACAAGTCTGACAGCACATAAACTGTACT-----CTGCTTTTGGTATTTAAGCG-----TATGTCCTTGTTTGTCCTAAGAAATTTCTCTTGCCTTGCAGATTACATGAAAGAATCCGTGTGCAGTTCTAGCACTTGTTCCTTGAATAGCAGTGAAAACCCTTATGCCACAATTAAGGACCCACCCATCCTCACCTGCAAGCTTCCAGAAAGCAGCTATGAAGAAATGAAGTCGCCTGTGCACAGGGGGTCTCCGTACACAGATGTGCCATCCTTGTCGACATCTAATAAAAATATATATGAAGTTGGTAGGTGTCTCAAATAAGTAACTTAGTGACAGCAGGGCACTAGTGCAGCATCCGAAGTAAAATCAG----CCCTCTCCAGTCCCCGTTTTGAAAACATCCCCTTCT-TTTGTTGTTTTTTTAAGGAATTCAAAGTGAGCTGTCTTTCACAGGACCTCTATCCACTCTCATACAAGAAATCAAATTCTTGTGCCAACTCTGCTTTTTAAAAAACACTAAGTAT-GAAGCAGAAATACTGACTGGGGGTGGGGAGCTGGAGAGCCGATATacatacatacacacacacacacacacacTCCTCAACTGACTGTTGACACAAATTCCTGTTTAAAACAGAAAACAATCAGAACAGACAGTTTGCAAGTTTTGAAATTATCTTGTTCTACTTTCTCCCAGTTGAACCCATGTCCCTGGGTTCACTGATAAGACTCCTACCGCTAGGATCTTCTTAGGTCCCTTGGTTTTGACCAGAGCTTGGGATTCTGACAACACACTCACTTAGA-TTTTCAATGTCTTTAACAAGCCTCAGTCCTAACCCTCATACACTTATCCTGAGT----------CCTTGGTTTCTCTCCCCACCAAGTTAAATAGAATTCTTTTCCCCCGCCCAACGAGGCAACTAAAGCTAATCTGTTCTCTGAACTCATTTTTCACTATATTCCTTAGAGCCCACAGTCAGTGTGGTCCAAGAAGGCCGCGGTTGTAACTCCAGCTATATCCAGAATCCATACGACCTACCTAGGAACAGCCATATTCCTGGTCATTATGACCTCCTCCCAGTAAGACAGAGCCCTGCCAGTGGGCCATCCCAGGACAAGCAGTCTTAAGAGGGATAAGCCTCTCTCTTGCAATGTGCTCTGCTGAATATTCTCTGACTCTCTGAAAGAAGACAATCCCTTGACTTGAAATAATGGTACAGACTGACTCCAGCTGCG---TATTAGTTATAACACCTGGAACTAAAGAAGAGCTTCCAA--GGGACTGGATTAATTGTTCAA-AAAGTCTGTTCTCAAAACCAAAATTTCCCACCCACTCACCTCCAACCCCAAATGCTCTGGATGACATGATCTTTTAAAACATTTAAGATACAGCTACTCATCAACATCAGCTAAatatatatatatatatttatctatctatatatatatatataATCTGAAACATGATGCTTAGAAAGCATGTAGAATAGGTTTTACCAACTTTCCTAAGAGGAAAGGGAACTGGGGAGGTGAGGGGATTACTTGGAGGCACCTGAAATGTATATGTATCTTTAGTTCCTGTTACCCTCAATTATCTGCTTTATTGCCGAAGATAATTAATACATAGACACAAACTGTGTTAACATCAATCCTAAAGCACCTGTACAT---GTATGTCAGGTCAAACAAATTATAACAGCCAAGCTTACAGAGTTTAATATATAGTCTAATGCTGACAACTTCaattttttttttttaataaaaCTTTAAGAAATACAAATTAACTCTCCCTCTTCTGCCC--CTGGTAGGAGTAG---AAGAAAAAAGTTTCCAGAGCACAGCAGCCTCTTTCAGTCAAACAATGATTTCTAAGCCAGCTTTACCAAATCTTGCCAATTCAAAGTTCAAGAACACTGCAGGCCGATCCCGGCCTTGTTGTATCTCCTTAG-CCATCCAATTCCTGAGTCATTTCATATGAAATAAAACTCTGAGATGATGCCTTTCAGCAAGCAGTCATAG-----------------ACTGGTA------------------------------------------------------------------AGAATTAAATATCCCTACAAATGATTATTTGGCCTCCCGAATTTATTTTGGTTGGCATTCCTTGACTCAGAAAAGTACATGCTTTCAAGCATTTCTTCATAAATCTTGAGCTTGATGTAGTATGGAACCTAAAACTGTAGAAGAGATTAGACTCCCACTTTCAGGAAGTAGAAATCCACTTCCTAAAAGTGGATATGGGAAGTTTAAGTTG-TTAAAGTGCATTATGCTTTTTGATGGAACTAAATGAAATGATTAAAGAATGGACTGTAACAAATTGCTGTGACATGATGTAAAAACTTAAGTATATGAACTACTTCCACCTTCCAAGCACCATCTACTGAGATGGCCAAAAATGTATTACAAGAGCTTAATGCCCCCGATTCCAGTATTTGGTGTA-TCTATATGTTCTACTTTAATG-----AATA--TAAACTAGAGCTCAGATGGGTCAAAAAGCCACCACTCCCAAACCCTAAGGAGAACCTCCTCACAAGAATTGAACACCCAAAGGGCAAACTGAGAAAACCAACGGACACCCCGATACCACTCCATTCCCT------GATTAACAGTCCAGGCC--ATAAAAAATACTTCCAAACAGGTATACAGAAGAGGAACCAAGTGACTGTAAATGACTGCAAAGCTGGAACAGCTGCTACAGGAAATGTGGGAGTTCTGCAGCCCTTGACACACACTGGAAGTCTGCCATGGAACCCATTAGTTTGGGCAATAACCAGCAAAAGCAAGAAAATAAATGAGTAAATCCTCCCTCCCCCACTTCACTCAAGGCGTAAACAGATTTTACTGTTAGGGGAAATATAACACTTACTTGAATGCTGCATGTGTGCATGGGAGCAAGTGATCAGCAACAGCAGATTTACTTTCCAAAAAGCCTTATTAAAATATAAATACTAGAAAATTACTTTGTAGGCCCAAGGAAATGTTTCTCATACATATGT--AGAAATATAGATAAGAGACTTACCTCAGTATTTCAGGGCAACAAGTGCTCAAGTATC-TTGTCAAGTAAGGATCTACAAGCATGGTGAAGTCAGATCAACAAAGAGGAACTTGGTCTCAATCCCA-GTTTTACCTTCTTCCCTCACCCTGCGTGTACAGTAACTACTGCCTGGCAAACAGCAAACAAGCAGCATCACTCAAGTTTCAAGTTTCACCTCTTTTTTGCTGAGTATCTTCTGGGCAGA--ATTCAGCAAGAGGTGACATGGTAAATTGCAAAAGCACTGGGTCAAGATTAGT------------------gtaacttgccctctctgggttccttttttccccatgtatttaaaaaaaaaaaagggagaagcagagaaaggtaagggagctctaacaaccct--agctctagcattctatgattttCAAAGAAATGTAATACAACTCAAATCAGGCAATACAATGGAGAAGGGAAAGGCAGAGGGTGTGACTAATCTATTGTGACAATAGCAACCTTCACATAACTAAGAGTTATGGATAAAAGACATTTCAATCTGAGAGAGCAACTACTAGGAACTTCTGTCTAGCACTGTCACAAATAGGTTCATGGTCAACCTAAACACGTGCCCTGTACATTAGATTGGCAACTTGGAAAAATCTGTGCAATTACTTTATAGAAATTAAGTTTTGACTCAG-----TGATGTGCATACAATTCAAATGAATAAGAACAACACAATTATTGTACAATAGCATAATGCAACTATGAAATGGCAATACTTTTTTAAACAATCCAGATTTGTAATATATTTGTTCACTGTGCAAAGGGATCATACCTTGTACAAAATAAAGTGGATTTCTCAAACTAATTTAACAAGAATGCCTACTGTTGTGCTGCACACTGAAAATGTGTCTATAATCTACACCTTAGGTTTAAAGGTACAACTAACCTACATTTTGTGTGGTCACTCTAGAGAGCCAGAAAAGTGAAAATCATCCTGATAAGGGTTTGAAAATAAAAGTGAAACGGTTCTATCAAAGTTATAAGAAGACAGTCTCTCCCTTTAAAGTAATGAATGGGAACAACAC-ATTCATGCCCCAAAACTGTTGAAGAACTGCACACACATGAGTAT---ACTCAAATACAGAACTTCTCTGCTTTCACAAATATGTGGACTCAAAGACAAGTATTACAACTTGTGCTCAGCTCCAGAGGCACAAAGGTACTTCTATGGAAAGGAATAAAGGGAAGTGTAATGGCCACATAATTTGTATAAGTGTAATGAATAGCTGTCTGCCAATAGAAGTTATCACCCACTATAGTACGCTGGGTGCATCTGTTTTAGGATCTTTTAAAACATATGCTTGTGACCTAACTG a score=4902 s mm7.chr9_random 3290420 138 + 9745104 AAAAGTAACTCCTGAAATGAATTCATTGA-----GTTTAA--TTTGCTCTTCAGACTTTCA-----AAGGTGTATATATATTAACCTCACACT-AAGTCAACTCAAAATATTCCAACTTGTCAGTTCACAAGGCTT-ATGTGATATTTAAGT s bosTau2.scaffold2934 33823 150 + 96106 AAAAATAGCTTACTGAATGCATTCAATGGTGTATGTTTAAAATTTCTCCCTTATATTTTCATTTCAAAGTTTTATATGTACT--CCTCATACTTAAGTCAAACTAAAGCCTTTCAACTTGTCAGTTCACAAGGCTTAATGTGGTAGTCAAGT a score=5355 s mm7.chr9_random 3291054 339 + 9745104 AACCAAGAATAATATATTTTTGCTACTCAGAAA-TAAGTGTCATTCAGGAGGGACAATTAACAGGTAATTCTC----CAG---GGCTGGAGGT------------TGACACAT------------TTAGTTA-------ACAAAGGGT--------AAAGTTATACT---------------CTGTGAGTCTCTGAATATTACT-AGTACCATAAATAATAGTCAAGAAC--CAATGGCTGCAGGTGGTGCCCTTA---------------GCATCC-ATAC-----ATTCTA------------TAGTCACTCACCTACTGAGAAGGAAGACACAAGAG------TTCATCTGATCTCTGAAACAATGACAGATGGAAAACCTCTCTAAGGAAGATGGATTCATGGATGGCTACAT-GGGAGTTCGTTA---TGTTATTTGTGCTT s bosTau2.scaffold2934 35316 434 + 96106 AACCAAAAATAACGTATTTTTGCAATTTAGAGATTAAGACTCATTCAGAAAAGATA--TAACAGACAATCCTCAGAACAGGGAGGCTGGGGCTTTGGCATCTAAGTGAAACATAATACATAATCAATAGTTGTAAGGCTAAAAAAGGTATTTACTAAGAATAATAGTGTTTTAAGTCTATGACTTTAAGACTCAGAATACCACCGAATACCATAAATGATAGCAATAAATGATAAAGGCAGCAGGTTGTGTACTTAATCACTACAAGCTGTGCATTCAATACAGAAGATTCTAGAATGATGCTACTAGCCACTCATGAAGCCAGAGGAGAGACAGAAGAGGCCCAATTCATCTG---TATATGGCAACAGAAGATGGAAAATCTC---AGAACGGGTGGAT-----GATAGATACATAAAGGATTCATCATACTATTATTTATACTT a score=7635 s mm7.chr9_random 3292365 313 + 9745104 GAATGGATACTAAAAGCAGGTTCTCTCCTCAGTGAGATGAGG-TAAGAGGATCTGAGAGTCTATGGTCTGAGGAAAGGTTAGGTTCTGCAAACTCAAAAATACAAAGGGAATGTTGCTGGCTACTAGCACTGGAACTAGTACTAGCTAGTACTGATAA-AGAGTAGTTAACAGTCAATATGTACATTTTATGTTCACATCTGT-----TAACTACCAATCCTGTGTCTAATAAATGGTAAGAACAGGAATTCAAAT----AAATT--TAATGATTAGGTCAC---ATCAATAGACCTGAAATGTCTTTTA-ATCATGTGCAT--ATACATAA s bosTau2.scaffold2934 36325 314 + 96106 GAATGAGTGCTGAAAGCAGTAATCTTGCTCATTTGGATGGGGATAACATGGTCTGAGATTTTGTGGTCTGAGGCAAAGTTAAGTTACATTGACTCAAACACAGGAAAGGAATCCTGTTGGGTATTTTCACCACCATCA-------CTGGTACTAATAATAGAGTAGTTAACAGCCAATACACA----------TGACATCTGTGCCAGGACCTATCAATTCTATGCTCAAT-TATGTTAAATAATTCAATTCCAATGTGGAGACTACTAATAATTACATTACTTAACTAATAGCCAAATAATGCCATTTATATCATGTGTGTGAATACACAA a score=3006 s mm7.chr9_random 3292993 105 + 9745104 taccttagaaaataaaaCTAAAGCCAG----attttttttaaacaataaaaaaataaaataaaataaaGAATTCTCAGTTTATAATTGATTCAGCAGCTGATCAAATGT s bosTau2.scaffold2934 36783 101 + 96106 TATTTCAAAGTATATATTAAAAGCCAGCGGAATTTT-----AACAGTAAAAGCCCAAAA---AACAAGCAATTCTCAGTTCACAGTTGACAAAGCAGCCCCTCAAGTGT a score=2417 s mm7.chr9_random 3293110 73 + 9745104 AAACATTTGATATATCCTGACACATTATTAAAATTGACATTTTTCAAATGTCCTTAAAACTTGCAACTTGGTT s bosTau2.scaffold2934 36897 73 + 96106 ATACATATGGTACTTTGATGCATATTGTTGAAACAGTCATTCTGCAAATGTTCTGAAAGCTTTCGTCTTATTT a score=125795 s mm7.chr9_random 3294392 2883 + 9745104 TTTTGAATTTTTTTCC--GGATTATGAT---------------------------CCATTTTCCTCCTTAGTTTTACATTTTACAAAACTCTATAAACTGAAA----ACAT----AAATAGATTTTTAA-----CTACCCAACCTTT----TCTCCTTCTC--ATGTTGGCCAAAATTATCCAAATGGTACCTGTTTCTTTATAACAGATTAAGGAGACTATCTCAACAGCTCAAACCACTGGGGACATTTAGATTTTAT-AAACACAAGTCAGAAATGGCAAAAATTAGAATATTCATTTTCCTAACAATCAAAGAACTAGG--------------------CGAGCTCAGTCAGATACATGATTCAAACTCCAGAATTTAAAGGATCTAGGGCAAAGGCCAC--------------TCTG----------CTTAGTATACTTAACGGAATGGCTAGAGA---TAACTTATCTTGACACAGTGACAACT-TTGAAAAAAAGGTACA----GCGTTT-CTGAATAACAA-----------AGACAGGGT-ATGATGGCTAACTGGCTTTTAAGGAGAATAAA-CAGGTTTAAGAAAAAGACCTAAAATTAAAACCAATGGAAAGGAGAGTCAAGCACCAAAGCACTTCCCAACTGCCT-GAGCCTAAGCTTGTCCAAGTAAATAAAACTGCAATGCTTCTTACTCGGGACAGCCTGTCTCCTGAGATCTAACTCAACATGAAGACTCTTGTTGACATGCAAGCAAAGTCTCTTTCTAATACC---TAATGTTGCCTGGAGGTCTCCCAAAATCCA-CCATGTACAAG-TAGCATTTAAACCTATTCTTGGGGAAAAAAAAATCTATTCTTGGtttaaaataaaaaaattttaaaaaGCTACTCTTACTCATTTTCA-TTCACTACATAATTTATTTTTTCTTAGTTTTAGTTCATAAATCTATCGTAAATTTT------AATAGAAATGGAAGCTTTTCCTGTGTCTAGTGACACTGTTA------GAAAAATACAGCCTGTGTCACCACCATTTTTAGAAATA-GCTCCCCAAGAGTACAACGTTCTCTGCAGATCTAAAGTCTAC-CTGAACTGACA----GTTGCCCCCAATCCA--AGTTTACTCAGCAATGCAAGGACTTATCTTCTCACTCATCAGAAGCAAGGTTTTCATGGCTACTTCTAAAGCACTCAGAAGAAGAATGTAATCTCACCACACTGGGAAAG---CCCCTGTAACTGTTTATTAGGATGAGGATGTACTCCAAATCAATAGATTAAAAAAAAG----TCCAAATACAGAGCATGCATAAAATACAAAGTAGCAATTTATAAATAGACAGTA---TCTTTATAACCAATACACTAAAATAACAAA-TAACTACAAAAGAAAAACAAAATGACTGACTATAGCAATGCCTTCTGTGCTCCCCACACATCATGAGCACTGCAAAAGGCAGAAGATTTAACCATGAAACATAGTCATCTATGCAAGCCCACACA---GT---TTTTGCAGGTATCCCACCATCCTTAATAACGTCTTTGCAGTT-----AACTTTCAGAAAACGTCAGGGT-AAGTGCTTAATATTATCCACAAGGAAGTAAAACTAAGTATTAGTGTGTACATTTCTGAATGAGAAACTAGTTGTTCCATTGATTTCAATTATGTAGTGGAAAAATCTATTTCAGGGCCCTACAATGGCTAAGTACATTCTACTTAAATTCAAGGTACTATTTCACTTTACATACTAAAAGAACACATGCCTTT-AAGTGGTACCACTTGAGTATAAATTAACTTCTCACTGTATTCTTTAGACATACTAAAACCAAAGGATTAATTGAGCTATATTCCATTATACACTGCAGAACTCAAATATAAGCATTGTTAAAATAATTACCCATGCTGGTTGCTGAATATGGTGATAAAATTAGGCTGCATTTCACTTACTAGACAGGTTTAAAAGCAAAATTAACACTTCAAAATGTGATATTACCAGCATTAAGCTAGTTATTACATGAGCAATAAAA------ATATCACAAT-CTAGGAAATGAGATTGGTTAAGCTACTCTGGCTGCC-GATCACTGCAACAGAGACACCTCAGACAGAAGTCCACTAG----------------CCTACCAGACAGCA--GGGTAACTT-TGACCACATAACCACACC-CTATGCAAACCATAACAGTCCTTTGTGTTTATTAA-----TTCTTTTCCAGAAAAACAACAAAAAAGAATCCCC---------ATCATGTTTGATGCTTACAAAAATTAAAGAA-AAAATTTACAA-----CATAGACCTATTAAGGCATTTTAGAAACTGACTTCCA---CAATGGAAAATCTTCAAGCTCTCAAAATGCTGTTATGTTTACAGGGCAATCCTTAGATCTGTCAAAATATGTACTGTATTGAGA--AGAGTGTC--TTACAAGCTGCTCTGTGGCAAAACAATAGCTTATTTCTAAGGTTGTCTTA----GATCTGATCAGGACCAATAGGTCTAAACTTCAAGTGATAGAGTTCTATTCTGTCCTACAGTGACAGGCTTCCATGATGAAGAGTAAACAATAACTGAGAACTTCAAACATTCAGTTTATTAAACTAAGGCTAGAGAAGCCATAGCATGAAAAAGAACTGCAGTCATTCAGGACAAAGTTGAGGATTTTATAAAGCCAAA-TCAAAAGACTTAAGACATGGGAAGATTCTTAAGTGTAAGGAAGTAATAAAACACAGAAAGTGACCACAAGAATTACAAATATATTTAAATCTCAGACCTGGGAAATGGACTATACACAGCCTTCTAGGGGA----AGAGACGCCTTAGATGTTCTGACAGCACTGCACCTTTGGCTTGTTCTCAGTGGTGGGCGGAACATGAATAGGAACCACATTGTTGCTTGGAGACATGTCATTTTCACGTCTGTCTGACATTTGCTTCTGAGAAACAATGCGGTATATCTCTGAATG----ACAGAAGAAACAGAAACACTCAGTGTGTATAAACCATGAAGACTTTGTGTAAAAGAGACAGAAGACACACAGAACAGAAAGATACA s bosTau2.scaffold2934 38203 3022 + 96106 TTTTGAATTTTTTTCTCAGGCTTATGATGTTTGTGAGACATCAAATATACAGTCTTCATTTTTTTCCTTAAAAAAAAAAC---CAAAACTCCAGAAATTGAAATTTAACAGGTTGAAATTAAGTTCTAAATTATCCACCTAACCTTTGAATCATTCTGCTCCGATGTTGGCCAAAACTATCTGAATAATAGAGCTTTTCTTTTTCTAGATAGAAGAGATGATCACAATAGCTCAAACCACTGAGAGCATTTGCATTCTGTTAAGTACAAATCA---CTGACAAATATTAGGATGTCTATTTCCCCAATGACGAAATAAACATGACTAGCTTTAATGGGCAATCCCAACTCTTTAAGATTCTTG--TCTACCTGCAGAACC--------CTTTGGCCTAAGTCACCAACTGGCACCCCTTCTGAGAATTAGAATTTAGTCTTCTCAATGTAACGGCTAAAGAAATTCACCCATACTGA-ATAATTACTACTACTGGACAGAAATCATAAGTAGCATTTTCAGAATGACGACATACAAGTTTAAATAAAGTCAAGATGGCTAAGTGACTTTTCAGGACAATAAAACAGGTTTTTAGAAA----TTCAAAGTTAAGTAAATGAAAAGCTAGGTCCAAAAGCAAAATACTTCTCAACTGCCTTGAGCCCTAAATTGTCATAATATTTAAAAACTTAATGTTTCTT----GAGACAGTCCGTCTCCTGAGATACTGTTTAGAATGAAGATACTTGTTGAAATGCCATAAAATTCATTTTCTAATACTGCTTAAGGTTTCCTGGAATTCTCCCAAGATCCAATCATGCCCAAGGCAACATT-----------------------AACTCTACACTTGGT---------AAAAATTC---AAAGTTACT-TTATTCATTTTCAATTCACTATCTAGTCTCTCCTCTTAAAGAATTTTGTAAAAACTTAACTATCGATTTTGAGTAAAATAGCGATGGAGCCTCTTCTTGGGACTGGTGACGCTGTTACGTACCAAAGTACAGAGATTACTTTCCTGATGCTTTTGGTAATACTTTTTCCAAGAATA-ATTGAACTCT--ATGTCTAAAATCAAAGCTGAATTCACATAATGATGCCTCCAATTCAGTAGTTTACTCTGTTATCCAAGGACCTATGCTCTTA-TCATCAGAAGCAAATATTTCATGGCTACATCCAAAGCACTCAAAGGAAAAATATAATCTGACAACATAAAGAATAGTCCCCCTATAACTGTTTATTAGAATGTGAATATATTCCAAATCAGTAACTTAAAAAAAAAAAAATCAAGTTACAGAGCATGCATAAAATACAAAGTAGCGATTTACAAGGAGATAGTAGTATCTTCATAACTAATACACCAAAATAATAAAAGGGCTACAGAGGAAAACTAAGTAGACTGACCACAGCAATGCCTTCCGTGTGCCCCACACGTCATGAGCACCGCAAAAGACAGA----TTAACTATGAAACATAGTAATCTAGGCAAGCCCACACACATGTATATTTTGGGGATATTCCACCATCCTGAATCGTATCACTTTAGTTGACACAACTTTCAGAACACTTCAGAGTTAAGTGCTTAATATTATTCACAAAAAAATAAAACTAAATATTAGTGTGCACATTTCAGAATGAAAAATGAGTTGCTCCATTGATTTCAATAATGTAGTGGAAGAAAAC-TTTCAGGTTTGTACAATGCCTAA-TGCATTCTATTTAAACTCAAGGTACTATTTCA-TCTATATACTAAAAGAATACATGCCTTTTAAGTGGTACCACTTGAGCAGAAATTAACCTCTC-TTGTATTCTTTA-ACATACTGAAACCAGATATTTAACTGGACTATATTCCATAATATACTACAAAACTCAAAAATCAGCATTGTTAAAATAATTATCCATGCCTGCTGGTGGCTATGGTGATAAAACTAGGTTGCATTT-----ACTGGA-AGGTTTTAAGACAAAATTAACACTTTGCCATCAGAGACTAAGCGCATTAAACCAGTTATTGCCTGAGCAATAAAATGCCACATAATATACTGCTGGGAAATTAGAGAAGTTAAATGACTTGGGCTGCCTGATCACTGTAACAAAGGCACCTCAGATGGAATTCCACCAGTCTCTCCGGTTCCCAGCCTGCCAGGCAGCACTGTGTGACTTATGGCCCCATAACCATGCTACTACTGAAATCATCACAGTCTTTTGTGTTTATTAAGATAATTCTTGTCGAGAAAAA---------AGTGTTCCCCCCTCTCTAATCAACTTTGATGTTTACAAAAATTAAAAAACAAAATTTACTAAACTACATAATCCTATTAAGGCATTTTAGAAATTGACTTCCAGAATAATGGAAAATTTATAAGCTCTCAAAATTCTACTATGTTTATAGGGCAATTCTTAGATTTATGGAAATATACTCTGCACTGAGAGAAGAGTGTTAATTATAAGCTGCTCTGTGGCAAAATGATAGCTTATTTCTACAGTCTTCTTAATTTGATTTAATCAAGACCAACAGGTCTGAGCTTCAAGGGATCAAGTTCTATTATGTCCTACAGTGACAG-CTTCCATGATGAAAAGTAAACAATAATTGAGGAATCCAAACATTCAGTTTATTAAACTAAGGCTAGTGAAGCCATAGCATGAAAAAAAGCTGCAGTCATTCGGGACAAA-TGGATGATTTTATAAAGCTAAAATCAAAAGACTTGAGACATGGAAAAATTCATAAGTATGAGGAAGTAATAAAACACAAAAA-TGACCACAAGAATTACAAATATATTTAAATCTCAGACCTGGGAATTGGACTATACACAGCCTTCTAGGGGAGAAGAGAAACGCCTTATATGTTCTGACAGCACTGCACCTTTGGCTTGTTTTCAGTGGTTGGTGGAACATGAATAGGAACCACGTTGTTGCTTGGAGACATGTCATTTTCACGTCTGTCTGACATTTGCTTCTGAGAAACAATGCGGTATATCTCTGAGGGGAACAAAAAAGAAACAGCAACACTCACTGTGAACAGACCCATAAATCAGTGATTAAAA---ATTAAAGATACACAGAGGTAGAAGTTATA a score=11572 s mm7.chr9_random 3299824 401 + 9745104 TAGAAAAGAATGGAATAGGAATGTCTCCAGGGCAAAGAAGAGT--TCCCTGACTGAGTCTCATGACTAAGGAATAATGATAATCATCAACTTGTGGTTAAACTATACCATTCGCTCTTTATGTTGTC----CATTAATACCTAACTGGATAGAGCACCTTTCTGAAAAGAAAAACATTAAATATGTGATCCCTGTTAAATGTTAACTTCTTTACAAGTTGTTCTAAAGATTAAGTTAGGAAAACAAATCCAAAACACCAGAAACTCTATAAATTAC------GAAGGCATGCAACACTGGAAGAGAG-ACAAAGGAGACTTCTCAGAGGAAA--GAGAGGTAAATAATTAAAGAGATCTCATTACAAAGCAAG-AAACTTGAGCAGTGTTGTGCGACAGTCTACAAGTGCTGCATTC s bosTau2.scaffold2934 45773 399 + 96106 TAAAAGGGGATGGGACTAGAGTATATCAAGGGTAAAAAGGAAAAATCATTCAATCAGGCGAGTGACTAAGGACAAAAGATAACCATCAACTTACTATGAAACTAGACTTTTCAGTCTTTATTATGTTTTCTCTCTAATCCCAAATTGGATGG----CTCTTCTTCAAGTACAAATGATTAA-ATGAGACCCTCTATAAAT-TTAACTTCTTTACAAGTGGTTTTCAATGTT--GTTAGGGGAAC-----CAAAACAAAAAATATTTTACAGGTTCTTACATGAAAAGCA---AATAATGGACAAGAGGAAAAAGCAGAGTTCTCAGAGAACACCGAAAGGTAAATAATTA--GAGATCTCATTATAACGAAAACAAATTTGAGCAGCGTTATATAACTGCCTGCAAGTACTACATTC a score=17177 s mm7.chr9_random 3300415 2033 + 9745104 ACGGTTCAGCAGGGGTCTGATTATAAAGGGTCGCTTCAGCGTGGAGGAGCGGGCA------GTAACATGCTAAGTCAGAGGCAGGTACCTTATTTAACTCTCAGGGGTCTGTTCTCCTTTAGAGTCAAATGAATGTGTGGTCAGTTAATTTCCATGCAGTCCCTTTTCAAGATGCCCAAAGGTTAAGAATAATTAGA--AAAAAAAAGCAATCCTGCTTTATCTATTCTCCAACAGAATCTTTTATAGGAGATTTAGACATGAAGTAAAATACTAATATATTATAGCTTTAAATATGAG-GCATAACTCCAAAGATATAAAGTCTG--TTTTTCTACTCTCCCTGAATTGTGGATTGGCTGGCAAAATAATTCTAAAGAGCTTACACACAATTGTTCCAAATTAAGGAACAGGAAGGGTTATAATTCTAGCTCCATTGGTGCTGGAGACGTCGTAGGTGTTAGGATGCGgcagagaatgctgttctgttccaagcacccacaaagcagctcaagtcacctataactgcagttccaggggatctgacaccttcttcagatctcctcaggcatgtggtacacttacatatacaagtctatatacacaaaataaaaatttaaaaatCTTTAGTTTCTCCAAAGTTTTTAAAACCTAGTAGCCTAGTAATCCATGCCAGTCTCTACAAAAGCTTCTTATTTATTCACCTTTTCAAACCTCCTGTTCATCATGTACATCTCTTGAAGGTCAAAAAGATTCCCATTTGAGATAG---------TGCCACATTTTCTGCAGCAAGTGAGACCCAAGATACTA------------------TTAC--CCCTAGTGAAAACAGT---------CTCAAACTCGGCTGGCAAGACAGTTCAGTGAGTAAAGCGACCCATGTTTCTTTCatccctgggacccacgtggtagac----agtaagaactaccttctgcatttgtcctctgtcctccactctgtgcccacatacatatacacatgcatgcaACAGAAACAAGTTAAAATGTAATATTAAAACTTCTAATAATTCTCCATATTCTTATGAAGTTAATACCTGGCAACTTTAGCGCCTTTGTttttatttattttgagacagggtcttgttatatggtccgggcACATACAGTCCACCAAGTACCAGGATTAACAGATGTGTGTGTACCACCAAACTGGCTTTAAAGAACCAGTGTGTTACCTTAATTAAAATTATCTCAGCCATAGAATTAAGAGTTTAGTCTTCAATTTAGAAATTTACCTCGAATTTACTAAttacatggagaaatctggctaaaagcacctgaactaaagttcaaagttagaagtaccagtggcta---agacaaac--acatcatgagcctcttg-tatgatgagttgaaccacctttatggcattcaggccacaagctatacacctgcatttaatcacaaggaaacactggataaaactcaatctga--gaaatgac-----agctgacctagatctcttaaaaatactaaggatgatgaa--aaaggaaaaattaaaggaactattgtcaa------------gcagtgacaagacagctaaatagcacatatgctatgattccaggctttttccttcttatta----ttaattgaaattactggcaaaatctgagtaagatttgtagctaaagactgatgtgctattattatactattgatttaaatcactgtgttatggttataaaagagaaagta--cttgtttctagt-aaataagcaacaacaacaacaaaagacttagggataa-gggtagtatgcagagtacttacttgcatttgcatatagtgtgtgtgtgtgacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctttgttgggaagggaaaggtaaatggacagaa----------aaaagacactaatacttaaggaaatggggtgttaaggttctcacaaattctttatattattactgtaagatttaatcaactctgaaattgccaaaatacaaaGTTAAAATGAAAAGAGGCATG------GAAAACAGTGATTAAAAACATCTCTTAGGGA---TGAAACTCAGCTGGGATAGAGCTTGCCTGACAT s bosTau2.scaffold2934 46565 1647 + 96106 ACCTTCCAGCTGGGATCCGATTAAGGAAGGTTATTTAAG--TGGAGGAAGGGGTACAGGACTAAATCAGCTAAACCAGATGCAAATATTTTCCT---CTACAAAGGGCATGTTCTCCTTTAGAACAAAGTG--TATGTGATATACCAACTCCTGCGCAGACCCTTTTCAAGAAATCCAAAGGACAGG-----TTAGGTTAAAAAGAAGGAACTCTGCTTTATCGTTCATACATTAGGATCTCTTGTAGGAGATCTAaatataaagcaaaatattaatataaaatagctttaaatataaccaaataaagttaaataaaaGACATATGCCTATTTCTACTCTAA-TGAAGTGTTTATCAAGATGCAAAGTAAATTCTAAG---TTAAATGTAATAGTTTCAACCTGGTGAATA------------------------------------------------------------------------------------------AAAACAGCTAAAAT-----------------------------------TCTTCAGTCCTTCCAAAACTTGTG------------------------------AAAATAAGAGGCCTGAATTAT------------------------CCTATTAATACTACAGCTCACGTTAGAATTTATTAAAACTTCTT---------------CAAACCCACTGCTCATGATATAAGTTTCCTGAAGGTCAAAAATGCTCCAATTTGAGTTATTTAAAAGGCTGCCACAT--------GCAA--AGAACCAAAGCTACTATGCCTGATTAAAAGATCCTTACTACTCCAATAAGATTAGTGTCTGAAAACTCTAGTCCCACTTTTAAGAGA---CAATATGCTAAATGAACGAAAATTCTTTCA--ACTGggaattccctggcagtccagtggttaggac-----tctgca------------cttccac------------------------tgcagg-----ggcacaggttcaatttcag-----------------------------cttagggaactaa---------------------------------------------gatcctgtta-----------------------gccacgccacaggaccaaaaa----------------------------------------------------aaaaaaaTCTTTACCACAGAATTTAGAATTTAGTCTCCATACTACAAAGATGGCTTGGACTTATTGATCACAtggagaaacctggc---agacaccataaccaacat-------------caccagtttctaatcagacaaaccaatattgtgagcatcctgatgtgatgcgctgagaacactctgtggtattcctattgaaagcaaataaccagaattgaatcaaacagaaacatcagac-aaacccaaactgagggacatgacaaaataaccgacccatacgcttcaaga-----aatgtcaataaaccaaaagacagact-gaggaactattccacattagaggagactgaagagttatgataagtgaacgcaatgtatgatctgat--cagattgtcttttgctaataaaaacacaactggaacagctggcaaaatctgaataagctctgtagcttaaccatgatgaggcactattat-ctctc--ttttgaccactatactatggctatgacatactaaatatccttgtttttaggaaaatacacactga----aaaaaagctcctagggataacgagcagcatgc----------ctgtcactctcaaatggtaaagcaaaacaaaacagtat-----------------------tgtttatatatttagagaaaggaa--gaaaaagaatagagtaagtgtggtaaaattcctcagtatctgaggaatatgggt-taagggtatttgcaaatactttgtaccactattgcaacctt-----aagtctgaaatAGTCAAAATTCAAATCAAAAAGAAAAAAAGTAATACAGTATGGAAGTATGGATTAATAACATCGCTTAATGAACTTGAAGATGAAAGAAAACAAAGCTGCACTGAAAT a score=4962 s mm7.chr9_random 3303135 188 + 9745104 ctacaca-gtgGAAAACAAAAAGAAAGTAGGACTTGTAGGCATACTGTATATTCAACAAAATATTGCAAGCTTAAAACTATCTGCAGCGAGA--TCACTCAGAAA--AAATCTTTTAAAAAAGCTGCCAGTGCCACAAGCTGTCTATTCCCCTCCAG-------CCGTAGTGACTATTCTTCAGTTAACAAAAACAATTT s bosTau2.scaffold2934 49234 198 + 96106 CCACACAAGTGCTTAAAATGAAAAAAACAAGATTTGAAGACATATGGCATATTCAATAAAATCTTGCCTGCTTTAAACAATCTGCAGTGAAAGTTGACCCAAAGATTTTTTTTTTTAAAGTGACTGT--GTTCCAAAGACTGTTTATCCAACCCTAGCACCAACCTTTATTTACTATTTTTCTGATAAGAGAAAAGAATT a score=5841 s mm7.chr9_random 3303920 355 + 9745104 AATAAAGTA--CATGCAAATCACCaatatttatattatttttaaaaattGGTTTTTTTCTATGTATTTTAACATGTTGTTTTTCCTTAATTACTACTTAAATACTGatttatcaaatgtttgctatgtcccaggaagagctaagcccttgacaggcatt-aactcatataTTTTTGGGAACTACTAAAGTATCAGTGACAGAGCACTCTTTTCTGTGGAATAAAGATAAAACAAACAAAACAACAACAAAGCCCCTAACTAGCAATAACAAATTAAATCATGCCGTATCAAACCATACTCCTGTAATTTAAAAGTACAAGT-TCTTTCACGAAGAAAACAGTAACTAA----CCAAAATGTAT s bosTau2.scaffold2934 49434 307 + 96106 AATAAAATAGATATGTAAAACATCAATAT--AGTTTATTTTTAA----TGAGTTTTTTTCATA--------------------CTTTAATTGCTACTTAGCTAAt-----atccaatgtttacaatgtaccaggcgcagttaaatattttacatgtatggaactcactcaTTTTTGGAGTCTA---GATTTCCAATAACAGTCAATTCTTTTCTATGGATTA--GCTCACAGAAACAAAAC----------CTTTTCACTCACACCATTAAC---AGTCAAGTCAAATTACACCACAA----GGTATTTATAAATACAAGCCTCTCTTAAAAAGAAA---GTAACAGAACTCCCAAAACAtat a score=5771 s mm7.chr9_random 3304507 314 + 9745104 aaagcctttgaaagagtaa---gtaacttgctc-aagattatagctccaaaaat-----aagtggaagaatcaggcttTCCACTTCATGATCTAAATCCCTAGGCTTATTACA---CACACTTTTCTTTTAAACAATAAAAGAATACTTTAAGAGTTAAAATTCTGGTCATCTCTAATATAAGTGCTACATAC--AGCATTAAAACTTATTACATTACAATAGGAAACT---------AAACAATTCTATATAACAATTTATCAGAACACCACATAAGACTCTACTTTGTGTT--GATTAGATTCTAATTCATAAGTTCTTAAAAGTAACACATAATTT s bosTau2.scaffold2934 50000 318 + 96106 agatcccctggagaagggaatggcaacccactccaatattcttgtccggagaattccatggacagaggagcctggcaggctac-----------agcccacagggtcattaagagtcagactcgact-------gagtgactaacacTTTACAAGTTAAAAT-CTGTTGGCCTCTAATACAACTGCTGCATACCAAGAATAAAATCTTGTTACACTATAATTAGAATCTCATTTACTTAACCATTTCTCCATATATACTTTTTAGAACATCACATAAGAGC--ACTATATATTAAGACTACACTCTAAATTATGAATTCTTAAAAGTAATATACATTTT a score=3722 s mm7.chr9_random 3304905 139 + 9745104 AAATATGAGTCTGAAGAAATAAAATGTCTTCTTTTTCAAGAAGCTGACCTGGT-----TACTCACATTCCAAAACAGCATGAACTTTGTCGGTTCCTTG-TACTCATTTAACCCTTTCCATATGCAGGCTGGGCTGACTGTCTTT s bosTau2.scaffold2934 51106 142 + 96106 AAATCTGAGTCACTATAAATAAAATATTCTCTCACCCCTGAGGTTGACATGGTCTACACATCCACATTCCAAAAGACCATGAATTTTATTTCTTTTCCACTACTTTTTAAAACTTTTCAGTATGTTATC---ACTGGCTGCTTTT a score=14923 s mm7.chr9_random 3305332 484 + 9745104 AACTTCAAAAGG-CATTTATATCTTTCTATAGTCAGGATCTCAGTATTTACGTAATGAAAGTGCATTTTAAAAAGAGAAGAACATACATAAGAACATGTAACTGTCCCTTTGACTATGAGGTATAGACTACATTGCCTGAA--CACAA-GGAAATGAACAAATTACTTTCAAAGAATTTTTCCCCAGATGAATTCACATGACTGAAGTGCAACCTGCAAAAACTGTAACTCTACACATCAAGGAATTTATACTACAGTTGCTCTCTAATGATAGTCATTTTCAG-GTGGCATAACAATTTC---------CTAATTAGTTTAACTCAC-TTCCTAAAACTCC-AGTTCCCATTGGTGTAACC-GAAAACACAGGTCTCACCTGTTAGAATTGTCTGAAAAGCAGCTTCAACATTTGTAGAATCTAGAGCAGATGTCTCAATGAATGACAAACCATTCTTCTCTGTAAAAAGAAACAAAATTTTCAGTCTGGTAAATTTTGA s bosTau2.scaffold2934 51379 442 + 96106 AATTTCAAAAGGGCATTCAT--CTTTCCATAAATGGGATTTCAATATTTACCTTATAAAAAAGTACCATTAAG---------------------CATTGTTTTGTGTTTATGACCAGGAAGCATGGTATGCACAGACTAAAGTAATAACAGAAGTGAATGCATTACTTTCAAAGTATTTTTCCCACTATAAAC-CAGATGAGTTAGG---------------------------------ATGAATGTA-ACTACAACAGCTCTCAAATGATAGTCATTCTTAGCGTGATTTTATAGTTTAGTTTTCTGATTAATTTGTTTAAATTACCTTTCTACTACTTCTAATTCCCACTGGTCTAATCTAAAAATGCAAGTCTTACCTGTCAAGATTGTCTGAAAAGCAGCTTCCACATTTGTAGAGTCTAGAGCAGATGTCTCAATGAATGACAAACCATTTTTTTCTGTAGGGAGACACAAAA-CTTCAGTCTTGTCAAATTTAA a score=9252 s mm7.chr9_random 3306282 468 + 9745104 CCAACTTCTGGCGTAATATATAGACAATATTTTACTTTTACTTCAGTAAGTTAAAAGTAACAGTAAGAAATTTTCGCTCCCTTGT----------AATTACTT-CTGCATATAAATACCACCAATAACAATGAGTGAGACTATTCAGAATTTAGTTAACTTATCAAACGTCCCACTATTTCCACCCCTAACCATCCTCCCTAGCAACTATATAGC-----TAAAAACAC---------------ACTCACTTAGAAGTCTATTCAATTTG---------AAAATTTTAAGTTAGAG----GAAAAT---ACTCACAATCCTTTCACTAATACAA-----CATCATGACTTCTTAGCAGATGCAGCGCTGCTTTCTTCTGGTAGTTT-CCCCTACCAGAAGGGCAGC-TAGAAATAAGCAGATCCTATATGAAGCGCAAAGTGCT-CAACTTCTAAGCA------TCCTTGTCAGTCTTCGACACTCCTTGACATACTACTTTTCAGACTCACATAGAACA----TTGCTAAAG s bosTau2.scaffold2934 51891 521 + 96106 CCCACTTCTTAAGCAATAAG--AACACCATGCTACTTCCACTTTAGTAGATTAAAAATGA-------GAATTTTCATTGGCTTCTTAATTAAAACAAATACTTGCTACATCTAAACACTACCATTGGCAATGAATAACAGTGGGCATAATGCAGTAAACTTACCAAATGCCCAGCCAATTTCACCCTTACTGAGCTTCCCC--CTAACATACAGCCATGGTATGAACAAGGGGGGGTATATGTGATTCACTTAGAATTCTGTTACTATTGTCTGAAACAAAGCTTCTTGACTAGAAAACAGAAAATTTTAGTCACAGCATAATCAACAGTGAAAGCTCACATCGTGCACTAGTCAAGAATGTA-CAATGTTGCCCTCTGGTAGGCTGCCCCTACCACCAATACAGAGTCAAGATAGGCAGATTCTCTATTAAGCCAAAAAAGTTATAACTCCAAAGCAGCTACATCCCGGTTGGTCCTTTACACTCCCTGGGCCACTACTTTTCAGACCCGCATAGAACAAGTCTTGGTAAAA a score=20618 s mm7.chr9_random 3306750 325 + 9745104 AAGAGAGGTGTA------------ATGTTCAAAC--------------------------------------------------------------------------------AGAAATGCAGAAGCACTGTAATACTGTGGAGTTTATATCACTAACCTGCAAAAGCTCTTGCTTCATCTGTAGGAACTGCCCTGAGATGACGTAAATCACTCTTATTGCCCACAAGCATGATAACAATGTTACTATCAGCATGATCTCTCAGTTCTTTCAGCCATCGCTCTACATTTTCATATGTGAGATGCTTAGCAATGTCATAAACCAATAAGGCACCTACTGCTCCACGATAGTATCTG-CAACAGAAACATA----TAACTATCAGAAGACAATCAAAAAGTAGAAATGAATACCAGAAAGAAC s bosTau2.scaffold2934 52555 422 + 96106 AAGAGAGTCATACAGTCATCATGCATTTTCAAAACAAGATCTGTTAAGCATTCACGTTTACCTTTCCAGAACTGTTGCAACCCATTACCCTCATTGGAAGGGTCATGAAAACTAAGAAATACAGAAGCACTGTAATATCACAGAATTCGTACCACTAACCTGCAAAAGCTCTTGCTTCATCTGTAGGAACTGCCCTGAGATGGCGCAAATCACTCTTATTGCCCACAAGCATGATAACAATGTTACTATCAGCGTGATCTCTTAGTTCTTTCAGCCATCGCTCTACATTTTCATATGTGAGATGTTTAGCAATGTCATAAACCAATAAGGCACCTACAGCTCCACGATAGTATCTGAAAACAGAAAAATGTATTTAACTATTAGAAAACAACCATAAGATGGGAGAGAACACCAGACAAGAC a score=30656 s mm7.chr9_random 3308409 1213 + 9745104 TGAAAACCATGA-ACTTACGCAGACGTTATAGCCCTGTACCGCTCCTGCCCTGCTGTGTCCCATATCTGTGCCTTTATTGTTTTCCCATCAACCTGGATGCTTCTTGTTGCAAACTCTACTCCAATGGTACTCTTGCTTTCCAGATTAAACTCATTTCGAGTAAATCGAGACAGGAGGTTACTCTTTCCAACACCAGAATCTCCAATAAGGACAACTAAAAAGACAAAAAATAAATAAATAGTATAAGCTGGATGAAGGCACACACATTCAAAATACCAGCATACTTAACAGGAGGATGTTTGGCTTCAAAATAAATACAACCAAGGATTTTT-AAAGAGACAGAAGCATAGTACTGAATAGTTT-ACATCCATG--ACTAATCAATTTAAACCAATCACTTACTCTTAGTAATCTATTTCTGTCTGCATAATGACTTTCGCACATCATCTACTTAGCACAGATCAGATATAGCACCCCATCTAAAAAACATCCCCCTCTTTTATTCCTATTTAGGAACTCACACCCAGTGCCCTACTCATGTAAGGTAGCTAAACAACTGACAACTGAGCTATATCCCCAGCCCTTAAAAATGCAATTTTGCAATTTTAATCATAGA-ATACTGTAGTCATCAAT-------TCAAACACCAATT--ACCTTTAAC-TTATACCAACCTCACTACCTTAGAAAGCATT--CTGAAAAGTAAAT-------------ATCGACTTGTGATTTT--CATGTGTTAGACATCA----AACAAAAGATGTCAGCGCATGGAGTAGGAAAGTGTGTGTGTTCTAC-TACTGTCATGAAAGACTGGGGGTGAT-----------------AGAGAGCTGAAACACATTTAAAACAGGAGGCACGAGGCTTACAAGCTTTGCTGCTCTGCTCATAGAAACTACAATCA-TCTTTAATAGTTACAGT--TCAGACTGGCAGAAAGCACGAGGGCGCCCAACCTTACTACAAAC-AGGAGCCCTAGGAAGTTAAC----AATTCTGAC--ACACTGAGTCAAAGCCAAAGCAAGGAAGACAAACACTTTGACTTAGGACTTTAAAA------------AGTTTTTTTTTTTTTTCAAAACAAATTTTGATTATACCTGCTTCCTGTGGTTTTTATAAAAGATGGCAGTTTATTTACAAG-TAAC-------------TTCTCATCTCAAGTGTTACTCTACTTTGAAACTCTTCAAATAgagctggtgagatgacttagcaaataaaggcacttgcctccaaacctgaggaacagagatcca s bosTau2.scaffold2934 53349 1101 + 96106 TAAAAATGCTGAGACTTACGCTGATGTTATAGCGCGGTATCGTTCTTGCCCTGCCGTGTCCCATATCTGTGCCTTTATTGTTTTCCCATCAACCTGGATGCTTCTTGTTGCAAACTCTACTCCAATGGTGCTCTTGCTTTCAAGATTAAACTCATTTCGAGTAAATCGAGACAGGAGATTACTCTTTCCAACACCAGAATCTCCAATAAGAACAACTAAAAAGACA------AAGTACTTAATGTCAGATGGATG-AGGCACACATATTCAGAAGACCATCATGTTTTAAAG---------------CAAAAAAGATAGGGCATCAGATTTTTAAAAAAGGAATGAGGGTAGGGAGGAAGAGTTGAATGCTCATGTTACCAATCGA-TAAAATCAAT---TTATTCTTTTTAATGTGTTTCTACCTGCATAGTGACTTCCACCCATCATCTACTTAGTA----------------------------------------------TCCTGT-------------------------------------------------------------------------CTTACAAATGCA-------AATATTAATCATAGGTCTAC--TAGGCACTGATGACAGGCTAATGCATTAATTTAACAATCAACACTATATCAAACTTATTACCTTACAAGGTTATACTTGAGAGGTAAATCCTAAATCAAATGAACAATCTGTGATATGAAAATGTATTAGACATGAAAGCAACAAAGGATGTTAGTGCCCTAAGTA------------TGTTCTACTTAGTTTCATCAAAGCCTGGGTGTGACCTCAGGACTCATATCTAAGCAAAATG-AACACATTTAACACAGTAGGCAGCAAGTTTATAAACTTTGCCACCCAGATCACAGAAGCTACAATGACCCTCCCATAATTACATTTATCAGACTAGCAAGAAACTAGAG--------ACCCCTCCAAAATCAAGGAGCCCTAGAAAGCTGACTAATAATTTTGACTTACTCTGAGTCAAAGGCA----AAGGAAGTCATA-ACTTTCACTGATGACTTAAAAAAGAAGAAGAAACAGGTTTGTTTGACTGATTAGATGAAT-----TTATA------TCCTCTGATTACTATAGGA---AGTAGTTTATTTTCAAGCTAACTACAGTGGATTCTTTCTCACCTAAGGTGATA--------TATCACACTTCAAAAACAA-TGGGGAAATAGGCAGTTGTTTTAAAGTGTTTCTATCTGAACTTAAAGAACAAAAGCTCA a score=14846 s mm7.chr9_random 3311091 630 + 9745104 GAGGTTTACAGAATCTAAGCCAGCTAACATTTTTTTCCCTGCATAAATTTTTGTA--GGTATTTTAGTGAACACTGTATTTATTTCTACTGTTGACTAGTAATACTTTTTATG----------TAGCTAATTGATTTA---GGCATCAGACTAGAAAAATCAACAGC--AGGGTTAAGGTCACAGACTAATAAGCCATGTTTTACTCAAAAGATTGGGATTT-----GATGGTGCACGCAGAAAGGAG----------------GCTGACTGCACTCCAGCCAAAGGAAAAGAGAGTACACCTTTCTTGTTACAGAAGTACACAC---AGCTCGCCCTAGAACAACCATG---------CATTATCAAATGCATATCTTTCTGGCTTCCTGTATCAGCTGATTCAGCAAGAA-----ATCCCAGCAGCAGTGACTCCATGTAACAAAGAAGATAATTCTGTCTTTGTAGTCA-------------GAGAGTACACTAGCAAAC-------AGACATTAAATACTTTTACTGGATACCAGGGAAAATGATGTCAAGGTCATGAAAACA----------------------------------------GATTAGTAGGCTGGTTTCCAAACTCCACTACTGTAGATGTGAAGTTGAATCCCAGCAACATTAATAG-----CGCCTCCTTATTGAGATACATTCACT---------------GTTCATTCTTAGTATAGGAGGTTAAATGGTCAGATCACAACTCCT s bosTau2.scaffold2934 54450 746 + 96106 CAGGTTTTCAGAATCTGAGCTTGATAACATTTTTTCCTTGGTAGAAGTTTTTTTATCAATGTTTCAGAAAATATTATGCTTACTCCTACTATTGACTGCTAACGCATCTTCTCAGTTCTTTACTAGCTAACTGATTTATTAGATACCAGGAATAAATAATCAAACACTCAAGAGTAACAGCAAGGTGTAAGA--CCATGCCTTACTAAAGAGACTGGTATTTCAGCGGAAGGGGGACATGGCAAGGGAAGGAAACGCTGTGAGAGCTCCCTGCACTCGGGCCAGAGG--------GCAGACCGTCCATTATGCGCGAGAACGGATGTAAGCCGGCCTCTGGACAGTCTTGGAGAGAGTACACTGTCAAATGCATATCTTTCTGGCTTCCTCTATCAGCTGATTCAGCAAAAAAAATCACCCAGGCAGCAGTGACTCCATGCAGCAAAAGGCACAGTTATTTCCAGTTAGTCAATTAGAGGGTGTCAAAAGTACTACAGCAAACACAGACAATACAGTAAATGCTTC-------TACCAGGGAAGAAGACGGTAAGGTCATGAAAGTAACATATAAAAACATTTCCAATTTTATAGTGTACTACAGCTGATTCCTAAGTTAGTTTTCAAGGTCCTCCATTCTAAATGTGAGGTAAAATTCCAGTTTCAGTAATAAAAGTCTACCCTATTAGCAGAGTATACTCACTTAGTAGGGAACTAAGGTT--GCCTCAGTTCAAAAGGGTGGATGTTCTGCTGACGACACCT a score=4457 s mm7.chr9_random 3313231 233 + 9745104 gaAATGTGACATGATAAGGAGAGCCATTTCTTTTTTCTAACCAAAG------------CAAGAAGTAATCTATTTAGGCTCA-------ATGGCCAGAT--AGATGGATGGAATTATCT----AACAAAAGAGAATTCATTGGTCATTGATAATGATTCTAAAAAACAAAACAAAACAAAAAACTTATGGACCTTTGTGGACTCAAAATTAAACAATTTCAAGGCAAAATACTTTCATTAAGATGACAACATTTAACT s bosTau2.scaffold2934 55919 227 + 96106 GAGAAATGACACAATATGGAAAACTTCTTCTATGCAGTTACCAAATGAGAAACTGCACCAAGAAAGGTTATATTTAGGCTCACTAAATAATAAACAAACTAGAATGGATTAAGTTACCTGAATAACTGAAAAGAATTCACTG-----------TGATTTTAAAAA------CAAATCAAAAG-----------TTAACAGACTCAAACTTAGT---TTCCGACCAAAAACAGTTTAATTAAGATGATAATATTTAATT a score=92255 s mm7.chr9_random 3314203 4593 + 9745104 CCACATTTAGTTTCATAC-TTCTCTAGCAAGCTCATTTTCTGTACTAAAATTTAACTTCTCACCTCACCTACAGAATATTAGCTTTAAAATTTACCACCTGAAATTACT----ATTTTCACACTGGTTTTCAAA--AGCTTGGAAGATAATTTTAATCTCAACCACATTCACAGTCCAACCTCACCAAG-----TCTTTAAAATAAAATGCATCAATAAGGCTAAAGTCTAGACACGTTTTTCCAGGTTCATCAGAATCTGAGTTGCTAAGCCGAAAGTTGTGAAAGAAAAGCCACCAAGCTTCAA--CTTCAAG------TCGGTGGGTGTTACTGCCGATCAGCTGATGACTCGTGACACCTGGACTTCAATGAGACTCAGAAGATAAAGCCAGGGGAGGTAGACTACGCACCCAGCTGTGCTGAGGAAGTGCCACTTTGGCTGTCTTGATACCCAAC----------------------------------TACCTCACTTG------TGCCCCACAGCACCTTAACTACATTGTATATGTACAAGATTAACAGGTTTTTAAACAGCCA---------------------------------------TGCTTAAGTAAAAATTAACCTTCAAGAA----TGCATCATTTAGCATTGTCCTC----TCTGCCCACATTACATTCCCACTTAGACTAATCCACCCCATACTAATAAACATGC----TCGTGTTCCACG---------TACAAACCC-----CAGTCGCCTTAACT--TAAGTGTGCTAG--CTAGCCTCCTCCAAAGTTGAAATGCCACGGTTCATCTTAGTGAATAAATCTCTGTAGAATGAAATCATTTTAAAGT-----------------------------AATTGTATAAGTAAAAAATTGGCTAAGTAATCAGTGTTGAAATAAAAAATAAAGTGACTCATATCCTGT-AGCAG--TTTCTAAAAAGTGGAAACTCTTCTCAGCAGAATTTTTAAACACCCAGTCTCACACAGCAAAGTATACAAAAAAATAAAACCAGAACCCACATAGACACAAAATATTTCAGAAGTTTCTTGGTTCTGTGCTTCTTTATTAAAATTTACATGTTCTTTATAAAGATGTATTGATTAGTGAgtgaggtggctcagtggggaatgatgcttgcttaccacgcctgatgacatgaatttgatccctgagactgtcggggtggaagaaaagaactgactcccaaaatttgttctcttaccctcaacatgtgctatagtacacactagcatacacaAGTCAGTAAATACAATTTTTTAAAAACTTTAGGagccgggcatggtggcacatgcctttaatcccagcacttgggaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagagccatacagagaaaccctgtctcgaaaaaaccaaaaaataaaaaataaaaataaaaaaattttaaaagatttataGCTCAAAAGTCGGACAAGAACTATAACTTCATTTATAACCACTGAGTCCTCACAAGAGCTAAG-TTTTataatctcact-----ccccaaaaagtatc-----acagtatttccttt-----actgaggaaactgaggctcaaaaaagttgagCTgggagaaatagtataattatatcataatctcaaaaagtaaaaaAATACAAAAAAAAGTTAACTTTTCCAAGGTTACAAGGCAAAGAAACATAAAACCCCCATGTTTTCTCA----TTGATCAGAGGATGGTCTAA-TCTAAAAATTAAACTTTAATTCCTTCGGCCAATCTAGGATAAATTAACATTCTTAGAAAAAATAAAGTT---TTCTATAACCAACATTCACATTCCAAACCAAATAAGAGAAATA-------------------------------ACTTCAAAAGGTACCACCATTACAAAGTACTTAAAAATAAAACTCCCTTGATTGACTAAACCTTAGGATTTAGG------------TAATTTCAAATAATCTCAAATGCCTTAAATAAACATCCTAGGTCTCCtatttgtttttatttttttttaattttatcttattttattttattttttgagacagggactcactatgtaacctggttatcctggaactcactctgtagaccaggctggactggaactgcctgcctcttcctcccaaatgccgggattttaaaagcctataccgccaaggcctgctTTCCTAGTAGTATTTTTAA---GGTTTGGTGCCTTCTTATCTATACATTACTTTCCAATAT--GGTAGTAAGGGTA-ACACTGAAGGTACTTACTCTATAAATAGAATATTCG-------GAGTAACTTTTGATAAGGGTGTACTAGCAGCTAATATGTCAAGACTTGTAAAGAATTTG----GAAATGTTTCCTGCTTCTTCACTTAGTCCAATCACTCTTAGCACCCAATGGCAAAGCCAGGAACACTCACCATGCTTAACACTCTTG--AAACTCCACCCTCCCCAGAAAAGCTTTAAAAGCAAGGGCTTCTTCCTCACTGGCAATGATCTTTGTTCAACAAATTACTGATGGCTGCCCTTCTAATTCAGGAGCAGAGCAAGGCTACGAAAGTGAGAGCGCATTCATG-AACAAAAAAAGCGTTCACTGTACTCTCTCGTCACTGAGAACTGTATCCTTTCACTTCAGC---------------------------------TTCTTCGCGGACTCAACCCATAAGCAAGTCTCTATTTA------CATTCTTCCCT--GTTCTGTCCACCGGCTCCACAT--TTCCCCCCATCCTGTAATAAATTCTTGATTTCACTAAAAGGGCACGCTAGCACTATAACCCTCTCTCACTGTTTGGGAAAGGTATGTGACCAACCAGGGTTCTTCCCTTCCTGTC-------------------GGATCCTCCCAGTATTGCAGCAGGAAGCAACCAGTCCACAGTGATAAGCTCGCTAG-TATTTGTGCAGCGCACAACCTTTCCTGTTCGGGAACTGGGCCTTCAGGTCTGGCAGGGATAACAGCCACCACCCATCCGCAGCCCCT--TCTCGAA-AGCCAAGTAAAAGGAGTTATCCCGGTCTGGTTGTAGCTAGGCAGGGACAGAGATGAAAAGGGGGGGAAAAAAAAAAAAAAAGAAAAACGCGAGGTGGGAAGT--CATCTGCTTGCCTGGACACTGCGACAAGTGCATGAACGCCAGGAGTGAT-GGACAGCCCCTCTTGCCCTCCCCTTCTCTCCCTCCCACCAGCCAGGTCGCTC---CGGAGTGCTAAA---CATTAGTTGCCCGTCTGTGGGGAGGGA--------------------GGGGACAGTCCGCGGGTACTGACCTCGAGGTCTGCGG---GGATGGGGGTGGGGGCCCGGGGACGGGCGAATCT--------GGCCGAAGCCCAG-----GAAAAGGCTCACgag-------------gagggaagggaa---------------gaaaagggaaacgaacagaaaagagaaaaagCAACACCCCCGCCCCCCGAGCCAGTGGGTGTCCCG--ATATGGGTGCTCAGCCCAGGCAGGGGCCTGTCAGAGGGG--------GGACGT---------GAGACGAGCAGCAGCATCCAAGAGGA----------------------------GGGGCTCGAGACGCCCAGGGAAGGAACTGCACGGCCGTGAGGGAC-GCAGCCATCGGGGAGGACATACAGAGAGGGGCGCCG----CGGCTCGTCAGGCCTCCCAAGGGC-------------------------------GCGGGAACCC-----------------------GGACGAGCGGCGGGACCCCCGACGGGGCGG--CAGGAAGGAAGCGCCGAGGCGGACTCCGACCAGGGCAGGGCTGGCCC-TGCGCGGGTCCCCCGGGAGTGTCTCGGG-CCCCAAATGGGCTCTCGCTG------------GCCCACGGCCTCACCTTTAAAGAGGTAGTCGTACTCGTCGTCGCGGGTGCCCATGGCGCGGCCGAGGAGCTGAGGGGCGGGAGCGGCGGTGGCAACGGCGGCGGGACCAGGGGGCGTCGCTGCAGGGGTAACCCGAGCGAGCGAGGAGCTTCAGCTGCCGGACCCGGTGACGAGCCCCGCCCTGT--ATGCGTCACTTCCGGAAGGCCCCAGCCCCTCGCAGAAAGTACTTCCGGAGAGATGGCACCCCGCCCATAAGC----TAGGCAGGGTG----------------------------------GAATGCGCAGG---------------AGTGGACACCACATTCTCACCCGGCTTTGGGAAGGCATACAGGAAAAACAATCCTAAAATGGTCCTTGGAGCCTTTGGCTTGTTCTTCTCCCCAATCATTCAGAGAAGCGAAGT----------------GTAAATCTTTTAGTATCTGGCTTCCGGTTGGGGGCGGAGTTTTGTCAGCATTAGAGACCCGAAGGCACTGCTGCCTCCGTGCTggttccatggtgtaatggttagcactctggactctgaatccagcgatccgagttcaaatctcggtggaacctGCTCCCTTTTCTTCATACTTTTAACTCATATTGATTGTATTCTTTAGCT-------------------CATATTGAATAATAGAATAAC-CTTGT------------TATATCTGCTCTTGGATTGA-------------ACCACAGGTAGCCTTTACCTATGAAGACTACACTAATCAATCTTGTCAATTCAGTA---GTATCTG---ATCTTCATGGAGACCT----ATTGAACTCTTTGGTTTTTCTTAGCCTTGG-------AGAAAGTTT-----GTTACTTGATTCCTTTTGCTGGAATTTTATACCCTCAGCTTCAGTTAAGGATAGGCACTCCTCACCCACTCAATCTCTCCACAAATCTATTGCACTATCTCCAGATGTCATTAAGAGAACTTCGCCCACCCTTTCTCATAAAGAT---TCAAGA---TCTTGAGTCCTATTTTCTGGCCTTCGAGCTAAGCCCGATTAAATAAAT------TTTAACAC-----AAGAAGAATGGCAATTCCCATGTTAGC--AAATATCAGTGTTAAGACTCAAGAAATTTGC--------CACAGCA s bosTau2.scaffold2934 56503 4545 + 96106 CCACATTTAGTTTTATACAGTCTGTTACAAACTAATGTACTAGACAAAAATTTCATTCAACAAATCAATCATAATATCTCAGACCTAACAGTTATAACCTGAAGTAACTGATAATTTTCACACTGGTTTATAAATAAACTTGGA-GATCTTTCTACTTTCAACTATATTCATAGTCCAAACTCACCAAGAGTCTTTTTTAAAAT--------TAAATAAGGCTGAAGTCTAGACAAGTTTTTCTAGATTCAGCAGAACCCAAATTGCTCAACCATAAGTTGTGAAAGAAAAACTATCAAGATGCAAGACAGCAAAGTTCCTCTGATCAGCCCCACTAACAATCAGCTGATGGTTAATTACTACTGACCTTCAATTAGACTGAAAAGAAAA-------TGGTGTAGACTACGTACACAGATATTTTCAGAATATGTGACTCTGATTGAGTTAATGTCTACCACAATATTTGTCAACAGGAACTATGATTGATTTATACTTCACTTACGTGTCTGTCCCACAGGGCCTTAATCACAGTGTGTAAATGTAGAATTAACAT-TTTTAAAACAGTCAAGTTTTAAAATTAAAATTCACCACCACCAGCAGTCTCACTGTTGAGCTAAAGATTAATGTTCAAGAACAAATACATAATTTAAAATAATTTTCCTACTCTCCCCACATTACACTTCCACTTGAAGCACTCCATCCTACACCAATCAGGATATCCCTTCATTTTCAACTGATTAGAGCTACAAACTAATTTATAATTCCCTCAACTATTAAGTTTGCTAGGATAAGTTTTCTTCCAAGTAGACA-GCTGCAGCTCATCTCAGGGAATA--TCTACAAAGAATAAAACCATTTTAAAATGAAATTATTGTTGCTTCTCTTTAAATTAAAATTGTATAAATAAGAAACTGGCTATATAATCA---CAGAAGTTAAAAA----GTGACTCATATACTATTAAGAGCTTTTTTAAAAAGTGGAAATCTTTCTCAGC----------------------------------------------------------------------AGAATTTTTAAAAACATTCT----------------------------------------------------ATTAAACAGCAAAGTG---------------------------TACAACAAATGAAA-----------------------------------------------CCAAAACCTGTG--------------------------------------------------------GAACTTTAAAATACTTTAGAAGGC---TCTAGTTTTAAGTTTCTTTA---CTAATACTT--------------------------------------------------AAATGCTCTTC----CAGTTATAGATTTACGG----------TTTTAAGAAAAT---------AAAAACAAAAACAAAAAAACTGTAAGA------------------------ACCACAGTAACTTCTTTAACATTATCTGAGTTCTCAGAGAAgctaaaactttacagtctcacttaattctcacaacagtcctgagagatactattttctttttacagatgagggaactgaggctcaaaagagtcagctt---------------------tcccaaggtcacaaagcaaatatacgacctgaggcagtaattt------gaaaccaggcctgtgcgattccaaagccctgtgctttctcAATCATTGTTAGCAAAGTGGTCTAAACCCCAAAGCTAAATTAAAATCCATTAAGCCAATCCAGGGTAC-TAAATATTTTGGGGGAGGAAATAACTAGGTTCTATAACCAACATTCAAGTTGTAAACCAAACAAGAGAAATACTCTGATAGTCTATCTTGTCCTAAATTAATTACTTCAAAAG---CAGCCCTTATGTAA-----AAAAACAAATCTCCCTTTAATGACTACACCCCAGTCTCCAGGGTCTCACTGAAGTAATCTCACCAGATTTCAGAAGCCTTCAGCCAACA------------------------------------------------------------------------------------------------GAA-------TGTAAACTAA-------------TGCATGTTTCTTTTTT----------------------------------------------------GTATTTGTAAAATGATTAAGTACCCTCTTCTCTGTGAACAACTTCCCACTGTCAGGCGGTGGGAGTGGATACTGAAGGTACTCACTCTACAGAAAAATTTCTGGCCCAGAAGAGTAAGTGGCGGTAGG-----CCCATCAACTAGTAGGCCAAGGTTTGCAGAGTACTGGTGAAGCAATGTTTCCTGCTTTGT---TTAGTC-AACCATACTTAGCACCCAGTGGCAAAGTCAGAAAGAGTCACTAAGCTTAACATTCTTTTCAAACTCCACCCTTCACTGTAAAGCTTTAATAGTAATGGCTTCTTACTCGCTGGTAATGATCTTTGTTCAGCATACTACTGATGGCTGCCCTCCTAACTCCGGACCAGAGAAA--CAGCATCAGAGAGAGAGCATTCATCCAACAACAAAAGCATTTACTGTACTTTCCTCTCAAGGAAAGCTGTACCCATTATCTTTGTCGATTACAAAAAAAAAAAAAAAAAACTATTTGGATTCTTTCCGGACT-AACCAATAAGCAATTCTTTTTTTCACTCCCCATCCTCCACTATGTTTTGTCCAAGGGCACTACATGGTTCCCCCTATCTTATGAAAAATATTTAATTTGACCAAA-GAGCACAC-AACTTCCCCATGCTCCCCCACCTTTGGGGAAAGGTATGTGGCCAACCAGGACGCTTCCCTTCCTGTTCTAAAAACACCGAAAGGTTGGATCCTCCCAATGTTGCAGCAGGAAGCAACCAGTCCGTAGCGATAAA---GCAAGCTATTTGTGCAGCGTACAACCTTTCCTGCTCAGGAACTGGGCCTTCAGGTCTGGCAAGGATAACAGCCACCACCCATCCGCAACCCCTAGTCTCGGACAGTCAA-------GAGTTATCCCAGGCTGGTTGCCTCTGGGTAGGG----------AAGGCAGGAGAAAAGAAG--------------GCTGGGTGGGAAGTCACATCGGTCTGCCCGGTCACTGCGACAAGTGCGCG-----CGTGGGTGCTGGGACAATCCCTCCTGCCCTACCC----------CCCACCGCCGGGGTCGCACGAGCGACGTGGGAGAGCTCGTAAACTACTCG-CGGAGGGAAGGCAGAAAAAGAGCTACCAATGCCGGGGGCCATGCGAGGTTTCAGACCACGAGAAGTGTGGGGTGGGTGGGGGTGGGGCCGCCGACCCGCTCGGATTTTTAACCAGGGCCTGGCCCCGGGGATAGAAGAGGGCGAGGAGAGGCGGCTTGTCCGAGGGCAGGGAAAGGGTTCGCCCGAGGGAAAAGGGAGGCAGATAAGAAAAAGA-------------------TCTGTATGGGAGAGTGCGCCGAAAGAAAGGTGAAGAACGAGGGTAAGGGCCTGTCTGAGGGGCTCAGGAAGGGTGTATACCGAAGGGGAGGGGGCGCTGAACCCGAAAAGATGGATGGTGGGGGGGGCGCCCCATTAAGGGGGCCCCGAA--CCCGGGGAGGAAAGAAGGCGATT-TGAGAGACGGCAGCC--------GGCCAC---GAGAGGGGCGCAGGGTAGGGACTGTGAGGCTTCCTAAGGCCTCTGGGGAGGTCGCTATGAGACCGCTGTGTGGTGAGGACCCCCATCCGTGAGTGGAAGGAAAGGGGCTGAGCTGGGGGACCTCAGGATAAGCCGCACAGAGAGGAAGAGCTGAGGAAGGCCGATCTCAGAACAGGGGCAACCCGCGGGCGGGTCCCCCGGGAGTGTCCCGGGCCCCCAAACCGGGACTCGAGGGAGAGTTCCAGAGCCCACGGCCTCACCTTTGAAGAGGTAGTCGTACTCGTCGTCGCGGGTGCCCATTGCGCGGCCGAGAAACGAAGGGGCGGGAGCAGCAGTGGTAC---CGGTGGGACCAGGGGGCGTCGCTGCAGGGGTAACC----CGAACGCCGAGCTTCAGCTGCCGGACCCGGTAAAGAACCCCTCCCTGCCGCTACGCCACTTCCGGCAGGCCCCCACCCATAGGGGGAAGTACTTccg--ggggcggcgccccgccccTCAGCCCAATAAAGGGGGTGTACACAAGTTTGGCGTCTGTCGTCCAAGCTTCCCGGACTCGCAGGTGTTTCGAGTGGCTTAATGAGCGCGGTACTCCCGGCTAACCTC------ACTTACAGAGGCTGCTCTCCATACATAAT------AGTCTCTCCCTCACTCCACTCGCC-GTTATTCGGGGAAGCAGGGCACTGGAGAGCGCTTCAGCACTGCCTCTGGTGGTCGGTTTGTGGATGGGGGCGGGGTTCTCTAAGGATTAGAGAGCCGAAGGCAGAACCGTGAGCGTGGCggttccatggtgtaatggttagcactctggactctgaatccagcgatccgagttcaaatctcggtggaacctGTACTCCTTTC-----ACTTTT---TGGTTTGGGTTTTGTTTTTTCCCTGGCCACGATTTTTAAGTCATGTACTTATTCACAAAGTGACTCTTGTACACCTGCGGGGTATATGTGTCTTTGAACTAAGGAGGGAGGGAATGCCACAAAACTCAGTTGCCTAGGAAGACCACAT---GCATTTCCTTCAGTTCTGTACTGTTACCTAGGTGTCTCCTAAGTATCCTCTACACTTAGCCCTTTTTTTTTTTTTAACCTCGGCCCTCTTCGAAAGCTTCCATGAAAAGGTGATTCTTTTTGCTAGAATTTTCAACCTCCAACTTCATACGAGGGCAGGCACTT----TCCACTCCTTCTCTCCAGAAATCTCCCAAACTGTCTCCAGATGT-ATTCACAGAACCTCGCCCACCC-TCCTCATCAAAATTCATCAAGAACTTCTTGAACCCTTTTTGTCATCCTTTAAGCTTAACCTGGttatataattattttatttaacatgcagagcgaaggatgacaatttccattttttcagaaatgtggatggggaggttcaagtgatttccaaagatcacacagca a score=5007 s mm7.chr9_random 3320343 391 + 9745104 GGGGAGGGGAGATCATATGAT-ATGGTGAAA---------ATCAGTCCCTGGCggctctgaagatggagggaagtagccatgagccccgtaatccagaggcttctagaaactgggg---------------tggggtggggtggaggaccaaaagaagtt----cttcccaaag--------aagaaacacagccttttctataccttgaagtta--ttggtgttagcccagCCAGGCATTAA-----------------------------------TTTAACTCTCCAAGTTCATGGCAATTAATTTTGGCTTGCATAGAAAACAACTACCTTGTCATTTTCAGTACTTTCTCCACCAGGACAAAGGGATCGAGTGccaggtatggcggca----cgtgcctgcaataccagcacctggg-agatggag--------gcaagaggaccagcagttcaaactcagcctaagctaGTT s bosTau2.scaffold2934 61527 476 + 96106 ggaaaagggaggtcagagggttgtggtgtgagaaggcctcaaccggcccttttggctttgaacatgaagaaagggggccaggagcctaggaatgcagaggcttatagaagatggaaaaggcaaaatataaatgagaggagatggaaaaggcaaggaaactgagtcttccctaaggccaccagaaagaacacagccctgctggtaccttgattttagcccagggatacccatgtcacacttcagacctatagtactgtaaagtaatacatttctgtagtttcaagtcaccaacattgtggtaatttgttacagcagcaatagaaaactaatacaGTGCCATTTTCAGTGCTTTCCAAAGCAATATATAGCAACAGAAGGTTTACCAAAGGGTCAATAACAGTTCTGAAGGAGTAACTCATGAGCAGATTGAGCAATTCTGGCAACAGATGCCACAGTTCAGAG--GGACTGAGATAATT a score=6691 s mm7.chr9_random 3320924 298 + 9745104 GAGGGAAAAGGCAAGGCTGGAAGCTCTTTTGGGGAAGTGAGGAAGAAACGTGATCGTTGGTGTGTGTGAAGCAAGGTCAGGGACACTGACAGAAGGCTTGAGCACATTTTCCCTGACATCATTATTTCTCAATGTGAATTCCTGGGCAGGACAACACTGTTTGTCAACAGAA-ACTTGCATGACCAACTACACTGAGA-GC----TACACGTTACCTCCCATCCTAGAGAGTCCCCTGCTCGTGGGCATCTTTGGTCTATAAACAGGCACCGCTGAA-GAAATGTGTATTAACTGTG------AAAGCATT s bosTau2.scaffold2934 62226 308 + 96106 GAAGGAAGAAGCAAGTAAGGAAGCTCATCTGGGGAAGTGGAGAAGA--TTAGACGATAAGAGCATGTTAAGTAAGGCCATTAATGCCAGAGAAATAATCATGAACTTTTCCCCTTAAGTCATTATTTCTCAATGTGCA-TCCTGAGAAGGTCAATAGTATTCCTCAAAGGAAGGGTTTCATGCTCAAATAGGTTGAAACGCACTGTACACTGTCTCTCCTGCCTTAGAAGTTCCCCTAATACTCTGGTGTTTTAAAGTCTAAATATCCCACTCTGAAGGGAAAATATTTTAACTGTGTGAAACAGAGCATT a score=3047 s mm7.chr9_random 3324682 61 + 9745104 ACAAAGGAATAAAGTCTGTCTTCTATATTTCTCATATTTTCTACTGAGAGCATTATAAAGt s bosTau2.scaffold2934 65083 61 + 96106 ATAAAGTGATAAGATTTGTTTTCTGTGCTTTTTGCCTTTTCTACTGAGTATATTATAAGGT a score=13004 s mm7.chr9_random 3332697 355 + 9745104 aaatttaaatata-gcacagtaggcagaataaaataatgagcccgtgtcac---agccagcccaccaaaccacaagcatgtggccaagcccgtggcacccgcact--cagctacttgtcctgcccgttgctttttgaaacaaatcccagatatcatctccttctacctataaatatttcagtaGTAACCATTAAATTTTTCATTCA-TTTTTTTCACTTATAGTCTGAGGAAGACAAAGGCATACATAATTCAACTCAAAATCA----TAAGTACTCTGAAGCTGGCAGTGAAGGCCGATTGCAGGGGTAGATGAG----------AAGCTGTGCTGCCTACAGAGGTTTGTTACTAAATATTGTATTTAATGTTT s bosTau2.scaffold2934 74328 360 + 96106 aatcttaaacatatacaaactaggcagaataaaatagtgaagccaggtaccctaacccagtcccccaaaacattaaactgaaatcagtcgtgttccatctactttacctgctacttgcccccacccacattttctgaaacaaatcccagacatca-------------gtaaatatttcagtaGTAACCATTCAATTTTTCATTCAACTTTTTTCACTTGTAGTCTAAGGAAGACAAAGACATCAATAATTCAACTCAAAAAAACATCTAAGTATTCTGACGTTGGCAGTGAGGATTGATTTGAGGTGCAAGGGAGGAATGTCTAAAAGCTACTGTGTCTGAAGAGCTTTATTAATGAATCTT---TTTATTTTTT a score=5126 s mm7.chr9_random 3334621 365 + 9745104 atcacaccaTACATATGCCATATGACAAACATCTACAAAAACCATGTCTTACTTAACAGCCCTGAATCTCAAAGCAGTTTTTAGCC-TCTTCTCCAATGTCAACAATTTTAGTGGGCTTCACTCTGACCC----------------------------------------CCACA--------------------------------------------CCTCTGC-TTGGATG------------------------------------TATTTTATTTTG--AAATTCTCCATCTAATGACACATTTGTCAGAGGTTGCCAGGGAGGCAGATTAGCCTCTCTTTTTCTCTTGTGTTCTT--TTCAGTCTCCAGTCTT-CAGTCCGTCCCGCCTCTCAGCCCTTTAGGGAAGCTCAGAATAGAGGAGGTCACATTGGTGCTCTCAGCCCCCCGCAGAAACATGGC-AACAGGGAGTCCTTATTATTGCCATA s bosTau2.scaffold2934 74783 482 + 96106 ATCACAGTATCTCTA---CACATGAAAAATACCCATCAAAAC-AGATTTTATTTAATACAACTAAATCTCAGAGCAGTTATTAGTCATCTTCCCCAAT--CAGCAATTTTTAAGGATTTCACTATAAACCACCTTGAATATTGTGAGTGCtttttttttttctggcctcaccacaaagcatatgggatcttaattcccaaccagagatcgaacttctgccccctgccttggaagacagagtcttaaccaccggactgctgagaagtcGCATATTTTATTTTTTTAAGATTTCAGTCTGATTATCCATTGGTTCAACATTTCTTGGAAGACAGGTTA--CCATCTTCCTCCCTTGTTCCATTAATTTATGTTGCAGTATCATGAATAGTGTCACCCCTCAGCCCTTTAGAGAACAGCAGTGTTGAGGAGGTGATATTAAAACCC---ATCCCCAAAAGAGATTTGGCAAACAAGAAATGGTCATTATTCCCACA a score=11771 s mm7.chr9_random 3338078 372 + 9745104 AAGCAGTAGTTTCCGGTTCCCCTCTAA-TAGTGAATCGT-GTGGTTTTTTGAAGATTCTTCGTGGCGCATTCCAATAAGGCCTGTACCGCTTAGACAAGAAGTCTATTCTTCAGGCCTCACTGCCTTCCGTCCCCGAGGAGGAGA-AGCAACAGCTAGCAG---AGGCGTGAAAACAGCGCCCAAGTATCGTGCAGCTGATTTCATTGAGAACAACA-----AACTCCTTTTCACAACACAAAGGAATGGAAATTGGAGCTGAACATTCATTGCTTTGAAACGA-----AAACGTGGGACTG----AAGCGCTCAGAAACACG--AGAGATTTTAAACATCCAGACTCTGATCCACTAATCTGCT-TGTATGCGATGCCGCATAAAACGCAGAAC s bosTau2.scaffold2934 78609 395 + 96106 AATCAATAGTTTCCAATTCCCCAACAAGCAGTGAATCATTAAAGTTTCACAAGGATCATTCCCGGTACATTCCAATCAAGTCTGTGAATTATAGACAAGAAGTCTATTCTTCAAGCCTCACTGCCTTCTATCCCAAAGGAGAAAACAGCAACAGCTAATAGAGAAGGCATGAAAAAATTACCCACGTATTGAACTACTGATTTGACTTAAAACAACAAGCTCAACTCTTTACAACAACATAGACAAATAAGGGCAAGAGCTCAGTTTTTACTGCCTTGAAACAAAATTGAAATATGGAACTGCAAACAGCTTTAAGACAAATGACACAGATTTTATAACCTTTTACTCCATTCTGTTAATTCTCTGTCTACATAATACCAAATTAAAGAGAGGAC a score=3630 s mm7.chr9_random 3339246 208 + 9745104 TAAAAATCCATAGCCCTTTGTAGAAAACAATCCTGCCTCAGATAAGCTCAAAGTAAAGAAAGGAGAGCACACAAAGAAATAACAGATACGATAAAGAGGCAGAAAGGACGTC---GGAAAAACTCACTCCCA---CTCGAGATAACAGAACAATGCAAAGAGATTTTTAAATAAGTTACT-TAAGAATGTTCAAGGAATAGTCACCTTGGGGCAA s bosTau2.scaffold2934 79361 206 + 96106 taaaaataaataattttttaaaaataaAATACATG------ATAACCTCAAA---AAAAAATTATAAATTACCAAGAGAAAGATTTAAAGGGGAAGAGGCAGAAACAACAAACAAGAGAAAGTATACCCCTAAAACTCAAGATAATCAAGCAATCTAGAGAGATTTTTAAACACATTGCTCTCAAATTTTTTAAAGAATGGATACGTTATGGAAA a score=2407 s mm7.chr9_random 3342308 74 + 9745104 TTTCCTACAAAAATAACTCCTTTATAGTTAGCAAATCTGAATGTGTTATCTTCCATAATTAGTTGGGAGTAGGT s bosTau2.scaffold2934 83104 68 + 96106 TTCTCTCCAAAAAT---TGTTTTATGCTTAGCCAACCTGGACTTATTTTCTTCCACTAATAATT---AGTAGGT a score=4104 s mm7.chr9_random 3343509 69 + 9745104 ctcTTCCAGACATTTCTATGAG------TAATTCAGTGTTTTCCATCATTAGTTGACCACACTCATTTTTTGGTG s bosTau2.scaffold2934 83318 75 + 96106 CTCTACAAGCAGTTTCCATGAGCAACTGTAATTCAGTGTTTTCTGTCATTAGTTGACCATATTCATTTTTTTGTG a score=5502 s mm7.chr9_random 3343790 527 + 9745104 GTACATACATGTGATGTCCTTCAGAAAACTCTTGACTGGAGAGATAAAGAGA-TTTCTATCTTCTTCAAGTGGGTTTTCCATAAATGTTACTACCGTCCACGGAGCAAAAGGGG---GGGGGCTTC--------ATTGTATG--------------AAAAGTGTGTTCTTTGTCAGAAG---------------------------------CTCAGTTTTCGTGATATCATCCGAATGTTTTGAAGT-TGGTCATCAGCTAAATGACAGTGAC------CAGCAACCTGG--------ACAAAAACAAACCACACAAGCTTTA---AAATCTCCGTTTGCTCATTCCCAGCTCTAACGTGCGGGATAAGTGGCATTTTTCAAGGCTTCCTGTGGGAACTGAAGGACAGTGCCGATGGGAAACTCTGA-CTACACTAGAGGACTCTGGCCTGGTGACAAA-----------------------GCCATTCCTC-----TGGAATAA-----------------------------TGCTG--TCCTCCA-----------------------------------------------------GGTGTTAAACAGAAGTGATCACAGTGCTCGGCCCAGTTGAGCAAGCAGTGCCACCTGAGCCCAGACCCAACCAG-AGCTGATTCTTATTTCCAGAATAACTTTAAGGACACAGGAA s bosTau2.scaffold2934 83413 699 + 96106 GCACATCCAATCAACTCCTTTTAGAAAATGCTAatttagagagatggatggactttttatgtacttcaagcaa-ctttccataaatataacttctttcaacagagagataagagctaaatagcatccaattgcaattatattctttgaaaaTAAATAAAATTATATTCTTTGGCAAGGGTCTAAATAATTCTAATTTGGAGTTGTGGATTATCTTGGTTTTGATTGTTTTGTTC---TATTTTTTAGTGTGGCTATCA----AAGGACACTAGCTGAGCGCATCCACAGAGTATGAATCACAAAgacaaatcacacatgctttctctaaacctcagttttcttgttac------taatgtgggagattagaggcttttctacagtcttgctgtgaggacccaatgagatcattcatgtgaaagtgcAATCTATACCAGCACAGCTTGGACTGGTTAAAAATTAAttgaacattctttggcattgcctttctttgggattggaatgaaaactgaccttttccagtcctgtggtcactgctgagttttccaaTAGCCTTTGGGCTTTTGTTCATTGTTAAGGTGGGAGGTGGGAGGAATTTAATGGTTCTAAAGAGAAATAATCAAGG----ATGTCCAATTGGGCAAGAGGAACTATTTGAGCTCAGACCCAACCAGCATGGGACTTTTCTTTCCA-AAGGATTTTAAGAGTACACGAA a score=8352 s mm7.chr9_random 3349166 416 + 9745104 aaaCTAGAATGCCTTGGTCAAAAGGGGGCGCTGTTGTGCACCACAAGC---AAGTGACTTTTCCTAG---CTGGATTTTCA-TTGTCGGCCTGGACTGTTGCTAAGCTGCTCTCAGATGACAGACTTCTTGTTTACAGGAATTA-AAGAAGGCAATTAAATAATTATAGGCATGAAAATGGAGGCAAACAGACATGCCAAGTTCTAGATTAAAACTAGGGGTTGTGGAAATAATTCCAGGCAAACAAGCAAC-----------GATTAAGCCACCGAAAGGAGGAGGCAGCGGCAGGACAGAGCAGTGC-TCGCTGCCAAGAGG---------ATGGGGCTCTCTGGTAGC-------------------------AAGGCAGAGTTATGTGGC-TGATTTTGTGAACCGCTTGGCGTCAGTGCAGGGACAAACACTCTTTAGACTGACTACAAAGCCAAAGGCAGCAGAA s bosTau2.scaffold2934 88202 452 + 96106 AAACTGGCACACCTCAGTCAACAGGGGGCGTGGTTGTGCACAACAAGATGGGAAAGGGTTTGCCTGAATATTGGTTCTACAGTTGTTTGTC----------CTGATCTTTTCTTAGATGACAGAGCTCTGATTTATAGGCAGTACAAGAAAGCAATTAAATAATTATAGGCGTGAAGATACAGGCAAATGGATATGTAAAGGT-TAGACTAAAACT-TGAGCTGCTGGAATGTTCTTGCGTGCCTGTGTATCCTGTATTCGCAGACTCAG-CAGAGAAAGGAGGAGATA---GCAGGACAAAGTATTTCTTCACAGTCATGTGGGAGCCGTATATGGGATTCTCAGGTGGCAGAGATTACAGTTGATGCCTTCCAGAGGACAGAATTTTGTTGCAAGTTTTTGTGACTAGGTCAACACC--TGCATAAAC-ATCACACTACTGGCTGATGGGAGAGATGATGGGAACAGAA a score=5055 s mm7.chr9_random 3350426 160 + 9745104 CCCGTGCCTCTCCCAGACCTC-------TGTGGCTACTTCTGATGGATGAGTACACTGGTAAATGGTTCC-----CCCACCTGAGCTTCCAGTC-TCCTTATC-AGCACATGACTCCTATGAGGTCAATCTTATCAGCCTCATCTTGGAGCTGTGTACAGAAATAGCACAGAGA s bosTau2.scaffold2934 89644 173 + 96106 CCTCTGCCTCTCCCAGATATTAATAACTTGTGGCCAGTTTTTTTGATTGAGTACACTGGAAAATGGCTCCTTCCTTCCACCCACGTCCCCATCCGTCTTTATCTAtcacaacaccaccataaagtgggcattattagccccagctcacagctgtgtaaaaaga-ggtacagaga a score=4632 s mm7.chr9_random 3350747 291 + 9745104 cttttttttg------cacatgggttctggagactgaattca------------gattctcatgctCTTTG-------AACTGCACCACCTCAC-------CCCACAGCACAC-------TCTACTATTTTTT------TTCATAtgtctaata----aagcactagatatatgtatctatttaagttggaattaatcaaaattcaagagaataaaaatgt-aatcgctagctacctacatttcaaatgctcagtagccaggtgtggctgctgtatcag-catgattgttttaagacattt-ctgtcttcgcagaagagtctagtaggcagtgccgATGGCAC s bosTau2.scaffold2934 89947 335 + 96106 tttttttttgccacaccatagggcttgtggaatcttagctccctgaccagggatggcactcaggccccctgctgtggaaacttgaagtcctaaccattggaccttcagggaactccCTTTTCTGCTATCTTTTAAAACACTAGTGTCTCTAATGTTTtagtcattagtgatatgtgactatttaagttag------ttaaaattaaactcaataagaacctcagtttctcactagccacacatcaagtgctcagtagccatgtgtggctacaatattggacagtacagatgtagaacatttcccattatcacagagta--ccaatggaccatgctgCTAGCAC a score=16332 s mm7.chr9_random 3351054 563 + 9745104 GTCAGCAACATAGAATCAGAGTCTTTCCTTTCTCTTAGCTCTGCCCTTCCTTTATCTCTACCATCTCATTCTGAATATTCTTTTCAG-AGCCTCTATATTCT-----TCCTAAATGCATGTCCGAGGCTGGCTTGCTGACTCTGTAAAGCACTCAGAATCCTGGGGCAGCCCTGGGATT-TGATGACAAAGACA-ACGGCTGGCTCTGTGCCCAAGCCCAG-AGACAGCAACTCTGAAGCAATGTGCACTGACGGCACCAGAGTGGGCAGCAGACACCC-----CTGCAAAGCTGCTGCTTGTCTGCCAGATCTGCC-----------GAGGCACAGAGG----GGAGAGGAAGTCAGAGGGGAAGTGAGGGGTCCGGAGTGGCAGGGCTAATGACACCCAAACTCTGCTGACTCCACTGTCTTTCTCTAGCTATTCCAGGCACAGATGT--ACCCTCCACAACCAGGAAGGACAGACAGTTCATTTGCCCTT-------------GAACTTAGTAATCACTC--------AAAGCACTCAATGAGTAGGAATTGAT--------TCGATCCTGGACTGAGTTACACATAGAAACTGACTCTCCCTGATAGTGTCAATTCTAG s bosTau2.scaffold2934 91217 615 + 96106 GTTAGACACATGAAAT-----GCTTACCTTTACCT--GATCTGCCCCTCTTTTATCTCCACTGTCTAGTTC-GGGTAGTCTCTACAGTCCCCTCTTCAGTCTAAGTACCCAGAGGGCATGCCTGGGGCTGGTCTGCTGGCTCTGCAAGGTACCCAGCACACAGGGCAGACACCCGGATTGTGATGACAAAGACGGATGCCTGACACTTTGTCCAAGCCCAGGAGACAGCAGCTCTGAAGCAGTCTGCAATGACAGCACCAGGGTGGGAAGTGAACAGCCTGTTTCTGCAAATTTCCTGTATTTTTGCCAGCTATGTCAGAATCCGACAGAAGCAGAAAGGATTAAGGGAGAAAGTCAGAAGTGAAGTAAGGGGAAGACAGTAGTGGTGCTAAATATACCAAAAACTTGGTAATCAAATGGCCTTTTTCTAGTTCTTCCAGGCATTGAAGTTCATCCTCCAAAACCATGAAGGAGAGAGGCTTCGTATGCCATTTCTATAATGGGAATAATGTAATCGTCACTCACCCTCTTAAAACACCCACCAAACATGAATTTATACAATTACACAATTCTGGATCAACTTCTGTGTTAAAACCACATCCTTCTGATGATTAAGACTCTAG a score=28055 s mm7.chr9_random 3354148 951 + 9745104 cccTGCACCACTTTTCTGACCACATTTCCCCAGCTCTGT---GTATAATTTAGGTAG-ATTGTCTTCAGAAACTCACAAGAGACTC-TGAAGTAGTTTGGGTGCTCTCCC---------------CCTTCTTTTTGCAATGCCCCACTTTGCTAATGTCAGTTTGATTTTAAAATATTGCCTTTGGATGCCCCATCTTCGGTTTAAATCGTTTAGCGTTTCTTCAACTTGTCCTTCCCAGGGAGAGACTGTGGCCTTGCTCCAAACTACACTCTGCCTCATCCTCTATGTTTCCCCATTTGCTTTGG-TTCCTATAGCTGGAGCCAACACTCTCCAGACTGCTGTGTGTGCAGCCTGCT-GGAAAGAAAACAGAAGCGGGTTCCTGCTGCTCCAGTCACGGGGCTGAGGA-CTCAGAAACCCCTCAGAGGAGCAGCT-GGTGAAAAATGACAGGCCACCCTGGGGCTCCCAGTTCCACCCTAGAGGGACACAAAGGGCACTGGAAAACTGTGCGTCTGGTTTCTCAGGGGCCTGACACTTTGCTCTGTTGTCCCAGTGACTCACGTG---ATTTTCCAGGCCTTCAAACTGGGTCAAC-AGCTTTGTTTGTCCCTATGGCTCCGCTGGGAGGCCACTCTGGGAAAAGT-GGCTGAATGGGGATGTTTGGCCAGGTGATTC----TACTGGCTTTTAGCCCCAGGGATGATTATTGATATTCAGGCCAGGAGTAAGGAGAATTAAACACT-----TCGTCCAG-TTAAATCGACAAATGTTGTGTCCCTATTTGACAAATGTTATGTCCCTATTTAAGTGTTAACAATGCTGCTACACAGTGGCCCTCCACAT-----AACCAAACAGAGAACTTGAGAGAGCCCTACATGAAGAGATCCACTCTATGCAAATAAGAAAAATGGCAAAATGGATGggggc-tgggtg-gtatgggatggctcagtcagtcaattgcttgctgct-----caagcctaagggct s bosTau2.scaffold2934 92235 926 + 96106 CCACACATTGCTTTGCTGACTATGTTTCTCCAGCTCTTCCTGGAGAAATTTAGGAAGTAACATCTTTAGAACattataaaacactccttagataattataaaacactccttagataattTAGAAGCCCTCTTT---CAAGGCCCCGCCTCACTCGCGAGAGTATTTTTTTTAAATACTGCCTCTGGGTTCTTGGTCTTCGATTTGAAACTTTTACAGCTGCTTCAGCACTTCCTTTCCTGAAAGAGCCTGTGGCCTTGCTCCAAACAACACTACATGTCTTTCTCTAAGTATCTGGGTTTGTTTTGGTTTCCTACAACT-GAACTGTTGCTCTCTGAATGGCTGAAGCTAAAGCCTGCTGGGAAAAAAAACAGGAATGGGCGTCTGCAGCACCATACACAGAGCCAAGGAGCTTGGAAACCTCTGGGAGGAGCGGCTGGGTGAAAAGAGGCAGGCCTCTATGGGATTCCAGATCACATCCTACTGGGACACAAATGACCCTGGAGGGCTGTGCTTATAATTTCTCAAGGGCCTGGCACTTAGCTCTGCCGTCTCAGTGACTCACATGATAATTTTCCAGGCCTCCAAACTGGGTCAACAAGCTTTGTTTGTCCAGAGAGCTCCCCTGGGAGG-CGCTGGAAGAAAAGCAGACTGAATGGGGATGTTTGGCCAGGTGATTCTTTTTGCTGACTTTCAGCCGGAGGAAATATTACCAGTATTCAGGCCAAAAGTTTGGAGAACTAAAAGCTGCCAAGCATCTGGACTGGATCAACA----------------TGCACAAGAGTTAT-----TAGTTAAGAGCTAACCTCACTGCTA-ATGGTGGGTTTTGTCATTCAAGAACAAAACAGATAACTTG-----------CAtg--------------------------------------tgtgtgtgtgtgtgtgtgtgtgcgcgtgtgCTCagtcaatcagtcatctccaactcttcgcagccctatggact a score=4555 s mm7.chr9_random 3355317 218 + 9745104 ctTGAGTGTCACCCAACCTAGCATGCACGACTTCTTGCATGACTCTTGGAACTTCAGAAACAAAACCAGCAAGCTTGTGTTCACCGTCTAAGTCAGAGACACTCCCATGAGTCTGTGAGTGGGATCTGAC--AATTTCTTCATTGATTGAGTAGAAGGGTGAGCCTGGGTCAGTATTCCTCAAATTTGAGAAGTCAGGGA-CCCAAGAACACATTTGAAGA s bosTau2.scaffold2934 93323 188 + 96106 CTTGGGAAGACCCTAAATCAAGATGTTC-ACTTCTCACA----------------GATAAGAAAGACAGCAAGCTTGTGC------TATGAATCATAGAAGCTTCCTTTAA-CTGTG---------TGACTTAATCAGCTTATTTATTAAGCAGTGGAATCATCCTGGGGCAGTACTTCTCAGATTTGAGAAATCACAGACCCCAAGAACATATCTGAAGA a score=4609 s mm7.chr9_random 3357770 156 + 9745104 CTAGTTCACTTAACATGGAAGCTCCTCTGAGGAAGGCCTCCTTCCAGAGCCTCACTTAGGTCAAGTAGTAACCA-CTCTGACATAGAC---ATGATCCCATGAAGG-GTCCCTGATCATGGAGTTAAGACTGTGGCTGCTAAGTTGAAACAAAAGAAGAGG s bosTau2.scaffold2934 95066 160 + 96106 CCAATTAATCTAATGTGGAAAATTCTCTGAGCAAG-TCTCCTGCTGGGGCCTCACTTGGGTCATGGATTGACCACCCCTGATTTAAACACTATGACCTTCCGAAAGTGTCTGAAGCAATGGAATAAAGATGGATGCTGCTAACTGAAGTCAGAGGAGAAGG a score=20833 s mm7.chr9_random 3359240 1072 + 9745104 TTGAAAGGTCTTTGAAAGCTA-TGGAGTGCTGTGAAATATAATA-AACAATGTGTCTTACGCTTATCTAATGTGGCTCAGCGGTTGGTCTGATCCT-GTCTTTGAGTAAATTCTCTAACAACAGCCCATTTGGAATcttgggatgtatcacagttggcagagtgcttgtctagtgagcaggaagccctgtgttccatacctagcaccatacaaactgaccatggtcacacatccttgtcatctcagcactcaggggacagaggcaagagaattacaagttcaaagtcacatttagctagtttgagagcaacctgggatacaaaataccctgGCACACCAGGAAGTACATAATTACTTTTGTCAAATTAAACATTGGGG-------TGGTCAGTATTTACCTGGATAGTAACTGAAT-----ATTTTTCAGAAATGCATTT-CATGTTGTGACCACTAGGTGTCTCGTTATTTTACAAGAAAATGGGAAAGCCTGGTGTTTGCACTTGGGTTGCTAGCCACCTGCTGTGAACACATTTGCCTCAGATAAAAATCTTAACCCTGTTCTAGCAAACATGG------GTGCTAGCGGATG------CTACTCATTTGAGACGT--AGAAGATATCGCTGTGGATCATCTCTCCTGTTCATATCCCGCGCACCTACAAACTGTTCTCCTGAGAA---CCGGAAGGAA--------GAAGAC--AGCATCAG-TTTGCCAATATTCAAATGCTAAGACCTT--------------GAT----------------------------------GGGAGCAGTGGTGCATCACTCCTGGTGTCCTGAGACAGGGTTTATCTGTGGTCTGAATATGAGCTGACACCCTAAGCCATGCTATGCTGTCTCTCTGCACCTAGTCACAACAGGACCATCTCCTGC--GCACAGACGTCACTCAGAGGAGTCTCTTTCACAAATCTTTTCTTTCACTGTGAACTTCGGGTTTGTAAACGATACATACGTACATACGTGTGAACATTTTCACCAATGTCATAGATGG-----CTTTAGACGATCTGTGGAAGAACTCTTTGCCTATAAGGGACATCAGACAGGCAGACACTAG--AACAGAGAGGAAACTAGATATTTTCTAAAACAGATTGCATCATGAAGAGCCCA s bosTau2.chr10 60671226 1046 - 70001009 TTTAAAGGACTCTGAAAACTACTAAAGTTCTATAAAATCTATGATAATAATATACCTT--TATTATCTAACATGAGTCAATGGTTGATCTGATTCTCGACTCTGGGCAT-TTTTCTAATAA-----------GAATATT--------------TTTGTAGgg-acttccccagtgg----------------------tctag------------------tggttaaaaatccacgcttccactgca--------------------gggtcacaggtttgatcccttattgag-------------gaactaagattccacatacctcacagcacagccaagaaaaagaaTACTTTTGTAGAATTAAGCATTGAGGCACTTATTGAATATCACTTACCTGGGCATTGACTGAACTCACCATTTTCCATAAAGACATTTTCATGTTGTGCCCACTAGGTGTCTCAATATTTTGCAAGAAAATAGAAAAGCACAATGTTTTCACCTGTATCTTGAGTCAGCTGTAATATAAAGATATTACTCGGCT-AAAATCTCAACTACTTTCTAGCAACCATTGTGAAAAATGCCAGCAAGTATAGTTTCCTCTC-TTTGAGAAGGGAAGAAAATTTCTTTGTGGATTCTCTCTCTTTCTCATAATCCATGTATCTGCAAATTATTCTCCTAAGAAAACCAAGAAGAAATTGGCTTGGAAGACCAAGAATAAGTTTTTCCACCAAGTGAATACTAAGACCCTACATGCAAGAACAAGATAAAATCAAACAAACAAACAAAAAAACACCCTACAGGCAACAGCATTGCATCCCCACTGGTTTCCTGGGCTAGAATTTAGTTGTCATCTACATATGAGGTGACATCCCAAAGTACATCATA--GTACTTGTGTACCCAGGCAGAATGTGTTCCTCT-CTGCTTTCACAGGTGTCAATCCAGGG------------------TTCCTTGCATTGTGAATTTCAGGGTTGTAAATGACACATAACTGCTTA--TCCCAATGTTTCCACCTTTGTTGTGCATGACTTTTCTTTAGATGGCCTGTGGTAGAACCCTTTGCCTATGAGTGACATCAGAGAGGAAGCTACCAGATAATAAACAGGAGACCGAATGCCCTCAAAAATCAACTGCTATTTTAAAAGCTCA a score=6903 s mm7.chr9_random 3361359 139 + 9745104 atcctgGTCAATGTAAAATATTAATAAAGGACACATCAATTATTTAAGTAACTAGAAACCAATGACATAAAAGACAAGCCTCAACCTCTGTGTATTTTCTATCCTGACAAAAATAGGAAGATAAAAATCAGTCAATTTC s bosTau2.chr10 60673755 134 - 70001009 ACTCTACTCAATTTAAAATATTAATAAGGGACACAACAATTGTTTAAGTAAGTTAAAACCAGTGACATGAAGGGTGAACCTCAATCTATGTCTACTTGTTATCTGGACAAAAAT--GAAG--AAACATCA-TCAATTTc a score=3733 s mm7.chr9_random 3361498 92 + 9745104 TATCTAACGTCAAATATCCATATATTTTTGGTTGACTTTGATTCTTAACTACATTTTCA------CAATTAAATAACAGGTTATAATCTCAATTCAGC s bosTau2.chr10 60674201 96 - 70001009 TACATGATATCAAATATCCAGATATTTTAGAT-GATTTTGGTTTTTGACTACATTTTTCACTCTTCACTTGAATGACAGG-CATCATATTAATTCAGC a score=4333 s mm7.chr9_random 3361773 98 + 9745104 AGCTGGACTCACTCTTGCTTTGTAATTTTAGAAAATCCAAATCATTTCTATAACTTATAAGTTGTTCCTCA----GAAATA---ATATCCTCTGATTTAGATCTT s bosTau2.chr10 60674300 105 - 70001009 AGTTGAACTCATTCTTATCTTGCAACTCTGAAAAATGTAAGAAATTCCTGTAACCTAAAAGTTGTTCCTCACATTGAAATAATTATGTTCTCTCTTTTAAATTTT a score=9002 s mm7.chr9_random 3364712 346 + 9745104 GTTCTTTCCATTGCTCTCCACTTCAGTGACAGTGAAAGGTGctatttcagtcgaggaaattgcagctcagagaagtcaagtgatttctcaagatcacacagcCACTTTAGAGATG-----------------TGATTCCAGTTTCCAGCACCTTTCTACATCCATAAATGCTTTTAAAAAACAGGCCAATGAATGTCCTTCCTGCCTCTTCCGCAGACTGCAGATCATTCCCCGAGGAACCACCAGGGGCAGCATGCTACAGC-GAGAATAAGGCAGCTGGGAGGC--------TGAAGACTGGCTTTTG------ACTCAGTCTTCTTCCAGTCCTGTGAC--------------------TTTGTAAAACTGGAAATGATTGATTCTCCCTGGTTG s bosTau2.chr10 60675897 389 - 70001009 GTTACTTCAGTTGATTTCTGCCTCAGTGACAGTGTGAGATGctatttcagatgaggaaactgaagctcagagatgttaaatggttttccaaggtcaca-------gttataagtggaagggttcaggtcttctgactctcagttccattagcttctcactTTCTTAGTTTTTTTAAAAACAAAGTACAGCTCAAGTCCT-CCTGTCTCTTCCGTGGAGCTCAAGGCAT-CCAGAATGAACCATAGGGGGCAGTCTGGTGCAGCAGAAGATAGAATAGGGTGGAAGCCTATTCCGTGAGAACTGGCTTTTTGTTTCTACTCTGTGCTCCCCTAGCTGTATGATCACGTGGCCTTAGCTGCCTGTTTCCAAAAATAGACATGATgggacttccctggtag a score=994 s mm7.chr9_random 3365182 65 + 9745104 TAGATGTGAGCCGTAAAGGAAAAGCTGGAGACTAAAACTATTCCTCCACTCATTTTGCTTTTTAA s bosTau2.chr10 60676504 59 - 70001009 CAGATGTAAGCTGTGACTGA------tgatgctaaagctgaaactccaatattttggccacctca a score=1621 s mm7.chr9_random 3365475 62 + 9745104 gaactg--ccaaactaactctttggctccTTCCCTTTCCCTACttttt--gaaataggatttccta s bosTau2.chr10 60676767 66 - 70001009 gaactgaactgaactgaaGCTAGGGTTCTTTCTCTGCTCATACATTTTATGAAATACCATTTTTTG a score=24233 s mm7.chr9_random 3365676 804 + 9745104 cagggctttctgcatgctgggcaaacattctaccaactgaactatatccTGGccctcttttctcttctttttctttgttcgttccttcctccctcccttcctccttcctGTGCATAGCTAGGTAAAGTCTTTGCTAGGAGTTAGTGAATTCTCCAAGGAACAACAGCAAATGGTTTCCAGTAACTCAGAATATCTGGAAAGATGTTTTCTG-----AGTCTTTAATAGTTGGTAT--------TCCCACCTACACTGCTGTTGGGTTTTATTACAGATCTCAGGAGTGCCTATTTCCCCCGCCCTACTCCAATAATATGAACATCTTAACCACAATAGTTCCTCATAGTTTCAGTTCCCATAAGCCAGAACATTTAAGAGCTGGAAAGAGTCTTA-----------GATCATGCTCCATATCTTCAACCAGATAAAATATTTTTCCATCTAACCAAGCAAGCATCAGATTTCCGGAATGACGG--AGTTATTCAAGGTTCTGTAGCCCG--AGTCTCCTCGTGT-GCACTGACCCCACTCTTATTGTGTGGCCGTTTCCAGTGGGTGATCTGGGCTCTTCCAA-AAAAATAGCAACAAAAGTCAAGAAGAGTCAACCATGTGATCATTGGCTGTTTTCTCTTTGTCACATATCGTGAATCTTCCTAGTCCTCACCATATTTTGATGCATTATTTATGAGAACCATCTGGTCACAGGTTCCCAGAGAACGCTGGGATTTTAAAACGTGTGTCTGA-TTTTCACAGGAAGCATGCTGCCCGGCTTCGATCTGCCAGGTACCTGCTTGTCAACCAGTGAGAGCACAACAAGATttctt s bosTau2.chr10 60676886 781 - 70001009 CAATGCTTTCT-------------------------TTGAAGTATAAAAATGTTCCCTTATCTTTTTTCTTTCTTtatatat------atacatacatacatatatatataACATTATATGGCAAAACCCTTGCTGAAGGCTACAGAAATCCCCAAGGGA--ACAGCCACTGGTTTAAGGTAGCTGACTACGTCTGAAAAGACATTTTCTGCCTGGATCTCTTATTACTTGGCATGATTCCAACTCTGCTTACATTTTTGTTGCCTATTATTACAGATTTTAAAAGTGCTTATTTTCCC-ATCCTACTTCAATAGTGTGAAAGCTTTAACCCCAGTTGTTCTTTATAGTTCCAACTTCCATAAGC--------------GCTAGAAGGAGTCTTAAGAGAGCACTTGATCCTGTCTTCTATCTTCGAACAAATAAAAtatttttccatttaacagaggcagcatccaatgcccagaaagcctgtaacttattcaaggtttcatagctagggagtCTCCTCGTGCAGAACTTATTCCATTCTTAGTACATGACAATTT---ATTGGTGATCCTGGCAATCCTGGCAAAAATCACAACGAAAGTCAAAATAAGTAAAACATCAGATCATTGGATGTTTTTATTTTATCACACACTACAAATTTTTCCATTTCTAACCATATTTTGATGCATTATTTATGAGGGCCATCTGGTCACAGGTTTACCAAGAAAACTAGAATTTTAA---GTGTGCTTCATTTTTTCCAGGAAAAACACTGCATAGCTTGGATTTATCCTTAACCTGCTCATCAGTGAGTCATGAGGCAAACAAATTTGTT a score=19976 s mm7.chr9_random 3367729 628 + 9745104 tgtgcttgGGGGGTGGTTAACTGTACTTTTAAAAAGCCAGCTCACCTTCTGATTCATGTCCTCAGGGAGTCTCTCAAAATCAGGTTCAAAATACACCAGCTGTACATGGG-------ATGTGTGGTCTTTTATA-----------AAAGCAGTTTAAGAAAAGAACTTTTTCCTCATCACTAGACTCAAATAACATGTGTGCTCCTGGCCAGCTCCTTCTGCTCTCGCACCACCAGTTTTTCTCCTCATCTCTGCTTCTAAATGGGCTCTGATCTCTCCAGGTATTCTTTTTTCCCTCTCTCTCTGTTAGTGGCTAAATAGCCTGAGTAGTTTCCCCCCACTTA--TTATATCCAGCATTCCTCACCAGAGCTCTACAATCATCCATATAAAAGCTGGAAATGGCCCCAAGCTATCATCCAAGA-AGCCTTCTGTCATGAGCAAGAAAAGCATTCCTATGCCCTATTTTCAGattcagcagacgtttgccgagcgcaaataagcgttcacgtgttttgccaggtattatgga-agatgacagaaataaaacagacccttgcggcttctatgttcctgtacttccagtccagcaaagaagccaggttgcacagatagctacatgagagagcat-------gccatagcatgcaaactg s bosTau2.chr10 60679221 625 - 70001009 TATGTCTATGAAATTGTTAACTATA-TTCTAAAAATACGATTCACTTTCTGGCTCAGTTTCTCAGAGAATCTCTCAAAATTAGGCACATAATACACCAGCTACACACAGgtgtgtgcgtgtgtgtttgtgtgtgtgtACATACACAATGCAGCT-GAGAAAAGAACTTTTAAA--ATGACTAGACTAGAATAAGCTCTACTGCTCGAGTCA---CTTTCTATTCTTGTATCATCAATTTCCCTCTTC--------TTTTAAATGGGCTCTGATCTATCCCAGTATTCTCTTTTC----TTCTCCCATTAATGGATAAATAACTGGTACAATTTTC------TTGATTTATATCCAGCCTTCCCCATCAGGGCTTCACAAGCATTGGTCTAGATGTTGGAAATGGCCTCAAGCTATCATCTGACACAGACCTCCCTCATTAGCAAGAAAAGCATTATCATTCTCTATTTTCAGACTTAGCAGATAGGAACTGAGTACACATAATCTTCAACGTACTTTTCTAGGTATTACGAAGAGAGTACAAAAAAATAGCAGG-----AAGAGCCCTACCCTCGTGAACTTCCAGACTATC--AGAAACAGTGTACTATAGATAGCTACATGAAAGATCACAAGACAAGCCATAAAGTGTCAAATG a score=18050 s mm7.chr9_random 3369040 518 + 9745104 ATTGTTGCTAGTGGGAGGTACAGTATGAATTTCCAGCCTGCCATATGCCAGGAACAG-AACTCTCAAAACTCAACTTGACATATATGACAATATATAGAAATGTAAGTTTATAAATAAATACATGTAAATTATAAATCTGATGTCCTATCCTGTTTGAATGATAATTACA--------TTTTTCTTTCTGCTACCAAAGCTTTAAATGGGACAAAAGTGATTGAATTAGAGAGAGCCCATGGTACCAAA-ACTGAACTAGCTCCTGATGAAAGACATTAACGTGCTAAAATGCCAATAGGTTCACGTGGTTATACCAAAGCAACCCAAAGACCGACTAGTGACCACAGTGTTTAAAATATTTCTCAGAAGATGACTACATGGAAACAGAATAACACGT--CAGTCGGATGGAAAGAGCTACGTTTCCATAGTTACGTTAAAACATAACAAGCACGAAGGGGAAACGTCTTTTGGTGGTTGATAAGCAAAAGGGAAGTGAGTCTTGTGCTA--AAGTGTTACCAAGTTGTTTT s bosTau2.chr10 9319670 491 + 70001009 ATTGTTTCCACTAGGAAGGGCAGTCTGAATGTCTAGCCTGCCATATGCCTGGAAATGTAACTCTCAAAACTCAGCTTTATAAACTCTACAACTTATAGAACT---------------------------------ATCTAACAGCCTAATTTATTCAAATAATAATTACCCCCCCCCCTTTTATTTTCTGGCCCCAAAGTTTAAATTAGGAACAATTCATTGGAATTATTAAGACTCTGTAGTCCCTGGTACTTAACTATTCCCTGATGAATTTAACTAAC------ACATGT-ATTGGATTTACATTGAAATACCAAAGTAGCTCAAAGCTTGAATAGTGACCACAATTTTTAAAATGTTTCTTAGAAAATGAGTACATTAAACCAGAATCATGTGTGTCAGTTGCATAAAAAGTGCTGCGTCTCCATAGTTACATTAAAA-ATAACAAGTACAAAGGGGAAATGTCTTTTGGTGGTTGATAAGCTGAAAGGAAGTGAGTTTTGTTGTACTAGATGATATGGAATGTTTTT a score=11105 s mm7.chr9_random 3370055 851 + 9745104 aAACATCAGATCAAGAG-GGAACGTTTAAGATCTCCCGTCATCCTGCCATCCTTGCTCAAATCTAAG----AGCATTTGTGGACAAACCACACATATAGTGACCGCTAAGACTTGATGTTTC--TGTCATGTAAAAAAACAGTGCAGACACCTGTTATTTGTGGTTTAATT--------CTGTTATTTGTAGCTTTTATATGGAAACA-AATTCAGTGAAATTCAAGCAA-----GGGAAGGAGAGTTACTCTTAGCCCCATATTATATTATACCTGTTCCTAACTTGAAAAAAAA------TTATAATCATATCAAATTAGGCCTGCAGACCT----GTCCAATCATGTTTT-CAGGCATTAGGTATCCAGGAAGTGTTTGTTAAAGCAATTGCTTAATGGACAATATACAGTCTATTATTTTAAAGAAAGTATAGTGGTGATAAGAATATTGCCTTGAggagagatggctcagcgggtaagggcactgactgctcttccaaaggtcctgagttcaaatcccagcaaccacatggtggctcacaaacatccgtaatgagatctgactccctcttctggggtgtctgaagacaactacagtgtacttacatataataagtaaataaatctttgaaaaaaaaaaagaATATTGCCTTGAGTAGTgtggggaaaacatgaactaaggaggccggctggagctcggtgcctattctcggactctctcctgctgtg--gacttgggtaatctgtaactactctggaacccagtttcctcatcACTTGCTCTATTTTTGGGTCAAACTGCACGGACGCTGCCTGTGCATGCTGCATGATTTCCCAACTCACTCTCCTTGTCTTTATAGTTACTTCTCTAACATGATCTTC s bosTau2.chr10 9320161 643 + 70001009 AAGCTTTTGCTCAAGAATGGAAGGTTTCAGATCCTC--TTGTATTACC--CCTTGTTCAAACGTAAGCAAAAGTAGTAATGGAAAAAACACGTGTA------------AGACTCAGTGTATTGATATAATGTAGAAAAATGATGCAGAGATCCTTT-TTTGTGGTTTATTTAATTCTCTCTGTTATTTATAGTATTTGCTCTGAAGCATAACTCAATAAAATTCTAGCAATTAAAGGGAAAGGAAATCTGTCTTGGCCCAATATTATATTAGCCTGACTCTCCATTTGGAAAAAAAATTATTTTATAA-CACACCAAATCAACCCTAGAGACCACAGAGTCCATTTGTGTTTGGTATGTAGTAGATATTCAATAAGTGTT----GAATCAATTAATTAATGGACAGTATATAATGGGCAGTTGTAAGGAAAGCAT-GCAGTGGCTAAAATGTTTATTTGA------------------------------------------------------TCAAATT-----------ATGG--------------------------------------------------GAAGAACACTACAG---------------------------------------------------------------------------------AAGGAAGATTCCTGGGATTCAGTCCCTATT-TAGGGCCTTGTAGTGCTATATAGCCTTGGGTGTTCAGT----------------------TTCGTCACTTGCTCTACTCTTGGGTCAAACAGCATTCTAGCTCCCTGTACATAATGCATGATTTCCCAATGCAATGTCCTCGTCCTTACAGTCTTCTATCTAAACTGTCCTCC a score=15994 s mm7.chr9_random 3370985 591 + 9745104 TTTTCAATTTTCTAATATATAGCAGCAGATTTTTTTTAAAAGCCATCATTTATATGCATACATCACATTTAGCTCCATTTTAATGTGCCATACTTCTGTGTGCCTTATATC--TGCCAAACAGATGAAG------ATCAACAGAGGTGACTGAACTTGCAT----------GAGTCCCTGAATCTTTCTTTCCCTTTCCATCAAGCCATTTTGCCATC--CCAGAGCTAACTTTAGCAAGAGCTATTGT---ATGAAGTGCAGTGTAATTAAGAGAAGCTGGTTTGGAGCTTTTTGTTGT--------------TGCTCTCTTCTAAGACTTCTAATTCAGAGTTGCATGGGATGCCTGGGTTTTGGAACCAAGCCAGTGCCTGGAGAATAATCTGAATTGTAAATGTTAGGCTAAGCTGAGA------------------CATATTTA-------CAAAAGCTGAATTCTAGGTCCTCTTCTCTGATGGTCTTCAACATGAAGATGAAGTTCTAAGTAACATTTTCCTTC----TGTGTGAAACAAAATGAAAGCCCAAG------------TCCTGTCTCCTGGGACTTGAAGGGGTATGTTTGCTTCAACACAGAGGAAGGAGGAACCTTGCTTGCTTGCCCTTG-TGAAAACCACAATAAATACTT s bosTau2.chr10 60685409 642 - 70001009 TTTTTAGATTGTTAACCTATAGCAGGAAAT-------AAACACCA----------ATACACACCAGACTTAAATATACTTTAATGTACCATAGTTTTGAGTATTTTATACCACTGTAAAACATATAAGATTAAGAATCAAAAGAGGTGGTTGAAACTGTCTAAAACTGTAGGAGTCCTTGAATTTTT---TCACTTTGCATCCAGCTGTTTTGCCATCATCGAGGGCTAATTTTAGAATGAGTAATCTTCTTATAAAATACAGTGTAATTAAGAAAG-------TAGAATTTTTTTCTGTAATTAAGAAAGAATTTTTTTTTCCTGAGACTTCTAATTCAGAATTGTACAGGGTGTTCGGTTTTCTAAACCAAGCCAGCAAACCAAGAGTAATCTGAACCATAAATCTGAGGCCAAGTCAAGAAACTTTTAGTTAAAGAATCATATTTAACTTCTACAAGAATTGAATTCCAGCTCCTTTATATCAATATACTTTGAAATGAAGACAAAATTACAAATAAAGTTTTCACTCAATCTATGAGAAGCAATATGGAAATCATAGCATGTGATGGTTTATTCTTTCCTGCAAATTAAATGATTACATTTGCTTTGTAATGCATGTAAGCGAAATCTC-CTTGCTTACTCTTGCTAAAGACTATAATAGCTGCTT a score=10824 s mm7.chr9_random 3371713 352 + 9745104 TTCTCATTTTTTTTCCTTGATGGAAATCATCGGTAAGCTGGGATACATTGCCACACTTTTTTTTTTCTTTGCAGTGGTATTGAAAGAATGTAGGAGACTGGATGAAAGAATGTGAGGGACTGGATCCAAAGAGTCTGGCCCAAACCAAATAATTTGGACCACAAAGCTAGACTGGTTTTTCCTATTTCTCAAAATAACTGGGACAGACTGCATACTAAACCCCCACTTTTCTTTGTGCTATGAAACCATTGCCACAAATGCAAGAGATTCTTCACTCTTCAGGTCAAATCCACACCATCCTTTG-GTCCTTTTATATAGG-GAACAGTTA-TTTGCATCATGGAGCTATGGAACA s bosTau2.chr10 60686051 310 - 70001009 TCCTTGTTTTCTTGTTCTGATGGGAATCATCAGCAACATGGAACATGCTGCCGCATTCTTT---------------------AAGCAATGATGTATATT---------------------TTGATGTAAAGAGTCAAACCTAAACCTAGTAATTTAGAGCACA---CTATTATAGTTCTCCCCATTTCTCAAAATAACTGGAACTGAGGGCACACCAAATCTCCACCTTTTGTTGTGCCGTGTAGACATTGCCAGAAATTAAAGAAATTCTTCATTTTTCAGGTCAAAATTAAGCCATCCTTTTCGTTCTGCTATACAGGTGAACAATGACTTTTCATTAATTACCTACAAAACA a score=739 s mm7.chr9_random 3372368 189 + 9745104 gtgcactatcaaacgtgatattatgcaagtgtttgggatctaacctaaggcttctgcatgctaggcaagctctctaccaactgagctacaccctcagATGTCCCTACGCCCAATTTTAATCCTAATTTGTAG-----TTCAACAAATGTCAAGTCATCTGAAGTTAAGTCATTCCAGATGGCCAAGTACCTAGG s bosTau2.chr10 60686457 131 - 70001009 GTGTGCTGATAAAGCTTATATAGTGTATGAGTTT----------------------TCTGTTAGAC----------------------------------------CATTTAATAAAAATGCTAATTTCTAGAATAAATCAACAACCCCACAGTCATCTAAAG-TAAGTCATCCCAACGAGTCAATAACCCAAG a score=20592 s mm7.chr9_random 3372763 876 + 9745104 TGTTGCTCTAAAATTCAGATCATTCTGAGGCCTCAGTTTTACCTAATCATCCTAAAATAG-----AGTTCAACGATGAAACCTGCTCAATAGATCATGAGATTA-TGATTGTCTGAGCTCACTTTGGGGCGATCAGGAAAACCATAGTACTGAACTGTTAGCCACTGACTTGTGACATTTACAAGAAACCTCACAATTTACCCATAAGTACTGCAGACAGGGTTTTGCTATTAAAAAAAAAAAAGT---CCTTCTTGAAGTTTTCATAGTGAAAAAAATATCCTATGTATGTAAGAAGGGAGAAGACT-CGGAACAGTTCCTCTTG-CGGGCTGGC-TTAAGCGGATACACAGTGTTTACAAAACACCCC-AGAAGGTCAGATAAGCCTTTCTAATGGCAGAGCATTGCA-GTTATCGTGACCCACGTGTGGCCTCAGGGATAATTTTCAGTATATCAGCCTGGCACATATGGTGC-CAGTTATCATTTCAATTTTATGTCAGAATCAAAACTGTGAGGGAAAAGAAAAAACACTTTGAAATTT-TGTAAGTCATCAGTGCCCTAAGAAGTGAGGCCTCCTTAGGAAAAA----------AAAAAAAAAAAGAAGCC--AACAGCAGTGGTTAACACATTTAGAAGAACCAAAC-----TCTCTGAACACTACTGCAGCTACTTAACTCATGTGCTGATGTGGTTCAAAGATGTAGATACTTACAGTATATTTGTGTATAGACAATATTTTTGTTTGTTCTTTGGGAATTTCACATATTACACTAAATGTTTAAAAAGAGTTTCTGTGTCCCTGATGGTCTTATCACTGCTAATGAAAGTGAAAAAATACTATGGGAATTTCCAAGAGGTAACACACACCTG---CCCGGAGGCGAGTTTGAGTGGCCAAAG s bosTau2.chr10 60686778 795 - 70001009 TCTTTTTCTGAAATT-----------------TTAATGTCACCTAATTACCATAAGAGTGCTCCTAGTCACACAGTTAAAGTCGTTAGAGAGATCATGAGACCATTAACTGGCTGAACACACTTTTGCGTGGTTAGGAAAACTGTGTTACTGAATTGTTTGCC-CCGGCTTGTGACATTTATGGGTACCCT-GCAATTTACCTACA--------------------GCTACTAAAAAAAAAATTTTTAACTTTCTTCAAGTTTCCACA-TGAAAAATG-ATCTTATTTG-GTAGACATGGAGAAAAATGTGGAAGAATTACTCTTATTAGGCTGACTTTGAGTGGGTACCCTATGTTTACAAAGTGTTTTGAGAGAGTCAGATCAGCAGTTCCAATGACAGCATATTATACGTTATCAGGAGGCACGTGCAGCCT-AAGGAGAATTTTCAGTCTATCAGAGTGGCCCATATGTTGCTTATTTATCATTTCAATTTCATATCGGAATCAAAATTG--------AAAAAGGAAAACTTTGAAACTCAAGCAAGTCATCTGTGGCCAGAGTAATGAGGTCTCTTGCCAAAAAAACCCCCAAACAAACAAGAGAGAAAGCCCAAAAAACAGAGATTAACAGTTTT--GAGAATCAAGCTTTGGTTTCAAAGTATTATTGCAGCTGTTTAATTCATTTGCTGATGCGGCTCAAGTATGCAG----CCACAGTAAATTTTT-----------------------------------------------------------AAAGGATTTATGTGCCCTCAGTAATTTTATCATTTTTAA-GACAGATGAGAAACACTAGAGTAGTGACCAAGTAGTAGCAACTACTTATTTTCAGAAGCTGTATTTTACTGACTAAAG a score=21945 s mm7.chr9_random 3374430 1628 + 9745104 GAAAGTTTATGGAAGGATTGTGTAACACCTAGCCTAGTCCTCA---AGCAGAACTTTACAGCCTTTGAGTAACTGGCCCGGAAGCTGACGTGGGTAAAGAAGGATGCGGTGGAGACTGGAGGGATCTGTATGTGCTA--TGGTTTTGGGGAGAAGATTCCTTGCAGAAGGCTTGGCTTTTTGTC--TGCTGACACTTTGACTTGTGAAATAAAGATGCCTGACTTAAGTGAGTGTGATGTCTGGGCGTTGAGGATTTGTTCCAGATGTTACACGGCTGAGATCTGTGAAGAGCAAGAGAGAGACTGGTGA---------------------GATTGGATCACTGGACCATCACTTCTAGCTTATAGTTCCCAGAGATTTTTGTGTGGAAG-CATAGAAGACCCT--TCCTTTTTTTTTCCTGGGGCCCAGTTTCACTGTTTGACATGAGAAGCTGCAGT----ATCTTCCC-----CTGTGCAGA-GCCTTTAAAAAAAAAAAAAAAAAGGTTATGTTGTGGGGAAAGGGAGGAAGGGGATGGCTTTGttttcttgaaaacctggagttcacttctcagcacccacttggtggctcacaactaccatgctaatccagttccagggactccgacaccctcttctggccctctctgtcatcacaaatgcacatgatgcacacagacaagcaagacattcataaacatgatgtaaTTCTTTAAAAAAAAAAACCTATTACTTTAGAGGGCACATATAATGAACTTTATTTATTTGTCTTGGATAAGGACTTGAGCAGAAGCCCTGGCAAGAAGGTAGCTGATGAAAATGACTGTGCCTTTTACTGTTTGTTTGCTTGTTTGTCTTACTCACAACTGAGGTACTATTAACACACTACCAAGTCCTGCCCCAGAGCCCAGGATACTGGATGTGGTTATGGGGGAAGAAACCCTGACTTTTGATTTTCTGTTAACTTCCTCCCTTGCATTCCAAACACTACT---------------------------------------------------------------CCAACTGCATCTTAGCCTGTGTGTCCTCCTTTAAGA---CTATCATCAAAACTACAAAGGTCTGGAGGATTTCACAGATCCTGCATTGCATTTCTTCTATTCACCTGGTGCATAGAT---GTCCCAGTTCTTAAGTACACAGCTTATAACAACCTGTGGATTGACACAGAATGACTGTTAATAGTGATCATCACTACCAGAGCATTCAGATGTCTAAATATATCCACACAAATAGGCATGTGCAAAGGAAATTCCACAGACGT--TCCTTTTCCTCAATCAACCAGCAACAACCTTGACAGAAGACAATTAGCTTATTGGATAGATTTCCTGCCTCCCATTCTTACTCCTCATCCCC-TCTCCAAGCCAGAAACCCCAGGAG-----ACCCCGAGCTGCACACCTTGTCAATACTATGTACACGACCAAGTGTCACT--TGC-TTAGTCTTCACGAGTCTCA-GTACAGATGAAAATTGTTTGTT---------ACCTGCCCTTCTCCCAGTTTTATCTGAAACTGTAGAGTCTGATGGAG---------TGACCTTTGGTAAAAGCAAGCCTCATTTCTGAAGTGAAAGCTAAGA-AGCTTCAAGTTTTGTTATTAAAACAAACAAGGAcaggcagtggtggcccacgcctttaatcctagcacttgggaggcagaggcagaggcaggtaggtttctgagttcaaggcc s bosTau2.chr10 9311189 1519 + 70001009 GGAAGTTTGGGGGAA-ATTGT-TAATGCCTACCTCAGTCCTCAGAAATAAGAATTCCAAAAAATTTGAGTAACTGGACCATAAGCTGATTTGGATAAATAAGAATATCACTTAGACAGGACACATATATGC-TGCTAACTAAGGTGGGTCAGAAAATATCTTCCAAAATAATTTG-TTCTTGTCACTGTTACTGCTTGGAATTGTGAGAAAAAGATCTATGGCTTGAGTAAGTGCACTGTCAATGAAATAAG-ATTTGTTACA-ATGAGACCTGTCTACTAGATGTAGGAAATAGGAAAGACACTTGAGACGTGTGTTTTCTGTGTGAAAAAACTGTGCCTTGGGAACAAGGTTATTAGCTCATAGTTCCAGGGAAACTTCACATTCAGGGCCTAAGAAACCTTACTCAATGTTTTTCTATTTGACCTAGTTAAATTTCTTGGAATAGGAAGTTATGATGCTAATTTTTTCAAGAATCGTGCAGATGCCTCTGAGAAA----------------------------------------------CTTTTGTCCTTTAAAACTTG---------------------------------TAACTACAGTA-TAATCTA----TAAAAATTTTGAATCACTATGTTGACAC---CTGAAACTACTATAGTAC--------TGTAAATCAACAATATCTCAATAAGatt-------ttttttaatttaaaatatCTGTAAATTTAGAGGGAACAGGGAAAGGAATTT------TTGTGAAGGATGAAGACT-----AGAAGGCCTACACATGAGGCAGCTTTCAGGCAG-------------ACTGTTTATTTGTTTG---GTCTTATTCACAGCTGAGACTCTATTAAGACATTAGCAAATCCTAGTCCAGATTTTGGGACA--------------GAGGGGTAAATACTTGACCTTTCATTTTCAATTAACCATTTCCCTTCCACTCCAAGTACAACCACAACTACatctttttttattttttattgggataattgctttacaatattgtgttggcctttgccaactacatcTTAATCATTTTGTCCT--TTTGAGTATTTTGTGATCAAATCTATAATTATCTGAGGGACTTTTCATATC----------TTTCATCT-TTCATTTTGTGAATATATATTGCCCCAGTTTTTAATTACATGGCTTATATCAATTTATGTGTTTGGGTAGAATAATTGTTAATTATCATCATTATTA--AAAACATTCAGATCTCTACATATATCCACA-AGGTTGGCATTTACAAAAGAAATTCCTCAGACATATTTATTTTCTTCCATCAACCAAAAATAGCCTCAACACAACACAATTATATTATGTAATAAAATTTTGGTCTCCTATTTTTATCACTAACACCCATCTCAAACCCTGAAACCTCAAAAGGAATCACATAGGACTACATACCTTGTTGATGTTTAGTAAATAGTCATCTGTTCTTATTGCGTTGGTCTTTGCAGTTCTCATGTAACGATGACAATCATTTATTTAGACCATTAGTTGTCCTTAATCCAGTTTTGTGC-------TAGAGTCT-CTGGAAAGGCCACTTTAATCTTTAGTGAAAAC---------CTTCAGGGTAGAAGCTCAGAGAACTTAAAATTTTTGTTTTAA-----------------------------------TAATC---------------------------------AGTTACCTACTTTAAGACC a score=5026 s mm7.chr9_random 3376212 254 + 9745104 CCCACAAAACAACAAACCTCACTCCCAAACAGGTTATTTGCTGAAGACCTTCACCTTTAAGCAGAGTGTCCTTTTCCA--ATCCCTTCTCTTCTTTTTCTTCACTGGCCTTTCTG-CCCACAACAGAAGCAACTGTTACA--CACACAGAAAGGTTTTGCAACAAAATGGCCTTGAAACAGGGTTCTACTCAGCTGCAGAGTTGGGCAATCAAAATAGAACAAATGAAAACCTTGCTTTCTATACTTCATGTGCtgttt s bosTau2.chr10 9312708 213 + 70001009 CTCACA-----------------------------------TGAAAA--------GTTACACAAAGTACCTTTTCCTGTGATCTCTTCTTCTTTTTTTCCCC-CTGTCCTCTTTGGTTTACAACAGACAGTTATGTTACAACCACATAGCAAAGTTTTGCAACAGAATGGCCTTGAAATAGAATGCAGCCCACTTGAAAACTTAAGCAATC-ATATGGAATAAACG-AAATGGTGACTGCTAGGCTTCACGTGTTTCTT a score=5314 s mm7.chr9_random 3376623 235 + 9745104 ttcatCTG----TACTTCTAATATAAT--GATTCCCAAGTA-----GCTTAAACTCCCCCAG-GCTTTGGAATACCCGATTTATCATCAGTACATGTCTAGTTTGCACTGCTGTGGTTCAATAAGAATAA----ACTATGTTCTC---------TGGGGTGATGT-TTTCATATTTATTGTTTTCATAGGTAGAACTCATGAGCATTCTAAAATTCTGCTTTTACTTGGTTGTGGGCATTAATTGAAAGTATCCAAAGAGc s bosTau2.chr10 60689817 259 - 70001009 TCCATCTGCAACTATTTCTAATAGACTCTAACCTCCAAATGTGCTTGTTTCAACTTCCTTGTTACTTTGGAAACCCCTACGTATCATC-GTTTAGAGTTATTTTGCATTACTGTAGTTCCTTATAAATAGGTTCACTCTGTTCTCATATTAAGCTATGAAGATTTGCTTTATTTTGGTTGTTTTTATACATAGGACTTACTAATATTCCACAGTTTTTCTTTTCCCTAAATATATGCATTGGTTG-AAGTATTAAAATAGC a score=2457 s mm7.chr9_random 3377578 190 + 9745104 AAGTGGCATGAAATGACATGAGAGCACTCTAGCCAGGGGCTTCCCACAGCTGTGGTAGCGCCTAGCCC--ATTTGTAGTTTCGATATTGGCCATACTCAT-TCCTGCCCACCCAAGCTGGCAAGTCAAGCAGAGTCAACGGATACATTTGTTACATATGCCTTTGCATGAGAACACTAGCGT----GGATTCTCTCC s bosTau2.chr10 60690170 182 - 70001009 AAGTAAAATGAAGGGTCA--AGTAAAATCCAGCAGAGACTCTCCCAAAGCCACAACCACTTCTTACCCTAATTCATCGTTTCATTACTGGCCACACTTTTATTCTGCTTACTTCTTTTAGTGCATTCCTTAGA-------------TCTGTTACACATGCTTTTGGATAATAATACGAGCCTCTACTGAATTCCTCC a score=1956 s mm7.chr9_random 3378415 80 + 9745104 TCTAATGCAAGTTGGCAAGTGTCATTTGTACTTTGAATGCCCCTTGTCCTATAAGAGGCC------TGAACGGTTCTGCATGGAAA s bosTau2.chr10 60690352 85 - 70001009 TCTAATACAACTTGGCCAGTTTCATTTGCACTCTAGGTGTCCTATATAATACAA-AGGCAATGTTGTGAAGACTCAGGAATGTAAT a score=4486 s mm7.chr9_random 3378495 163 + 9745104 GGTAAAGATCTTTGTG-TGCCTTTTCTCATCTCCTGGATTTTTAATCTATTATCACAAATTTAGAGCAGCTATTAAACCTCAATGGTCAGAGCTACAGAGTCAACTAAGGACCTCTAGTAGGTGGTTATTATTTCCAAAATACTCCCTTTGGGCTTCAAGGACT s bosTau2.chr10 60690675 160 - 70001009 GGTAATAATATTTCTACTGTCCTTTCTCATCCTCTCTACTTTAAGCCTGTCACCACTAATGTGAAGCTACTATTAAACCAGAGTGACCTTATTTATATGGTCAACCAAATAGCT-TGCTTAGTATTTTTTTTTTC---AATTCCCTCTTTTGGCTTcacaggct a score=6571 s mm7.chr9_random 3380868 216 + 9745104 AGGATTCCAATAGTGCTCTCACTGCGTGGAACTTGGTGGTAATGAAAATAGAGGATGAAG--------ATGTGGTATACCATAAATCAGCTGAATGGTTATATTTGG-TTATC---ATTCTACAAATGATTACATTCTGACCGAGGCTTTAGTATCAGAGGAAACGGTTATGGCAACTGCCATCTTG---CTTCCTGATAAAAAGATAAAAGTTAAAAACGCTTTGCTCTT s bosTau2.chr10 60691083 223 - 70001009 AAGATTTCAGTATTGTTCTTATTACATGGAATTTAGTAGTAATGAAAATGGGGGGGGGGGCATAAATAATGTAAT------TAAAACAGCCAAACAGTTATAACTGGAATATCTGGACTCCATGAGCCATTACATTGTGACCAAATGGCTGGTGTAAGAGGAAGTGACCTTGTTAGCTGTTCTTTCGTTACTTCCTGATAGTAAGATAAAGTT--AAAATGCTTTTTTTTT a score=11446 s mm7.chr9_random 3381301 142 + 9745104 agTATTACGCAGATTTGCCAGCAGAAGAAATAGAAAAGAAGCTGGCTTCCTGCTCAAGACACCGATTTCATGACATTCCACCCAACACACCAGAGAATTTCTGGGAAGTTGGTTGTCTTTCTACTCAGATATGTCTGGAAAG s bosTau2.scaffold2745 42363 142 + 102190 AGTATTATGCAGATTTTCCAGCAGAAGAAAGAGAAAAGAAGTTGGCTTCCTGCTCAAGACACCGATTTCGCTACATTCCACCCAACACACCAGAGAATTTCTGGGAAGTTGGTTTTCCTTCTACTCAGACTTGTATGGAAAG a score=10773 s mm7.chr9_random 3381443 235 + 9745104 AGATTATATCAAGGAAGATCTCGCTCTTAGTCCTCGTCCCAAAAGATGGCAGCCTTACAACGCAGTATTTTCTCCAAAAGGCAAAGAACAGACAACCTAGCTGCTGGAGTGAAAGCGAGAGAACAGACCTTTTTGTGTTTCATTTAGTTATCCATAGTTAAAGTTGGAATAAACATTGAACTTTGATTTTTTTTTGATCTTCTATTTAAAAAAATGCTTTGTTCTTTATCCCTCT s bosTau2.scaffold2745 43789 219 + 102190 AGGTTACATTAAAGAAGACCTTGATCCTTGTCCTCGTCCAAAAAGACGGCAGCCTTACAATGCAATGTTTTCTCCAAAAGGCAAAGAGCAGAAGACATAAATGTTGAAGCAAAAACAGAAGAGAGGACAATTTTCTT-----TTTAGTTATTTATAGTTAAAGTTGG------TGTTAAACATTGATTTTTTTTTGATCTCCTGT-----AAACTGGTTTATAAATCATTTTTCT a score=17625 s mm7.chr9_random 3385688 536 + 9745104 TTCAGGTGCACTTTTGACTGCT----CTAGAAAGAGACGGTT-CATTAACCTG-----TAG-GGAGAAATATGGATTTCAGATGTGT----CTCCCAGTCTAAGGAAGGACATAGGAACCAGGCTGCTCCCTTTCCCAGGCTCACGTTTT---CACCCACAGGTGTTTCCCTTTTCTGGCCGTTTTCCTTAAGCCCAGACAATAAAA-GGGTGTCCCTCTTATCCTC-TTTGCAGGATGTGTGTCTGGGTCAGTCAAT------GAAAAGAAAGCATGTCGGTTTCTGATTTGTTCAACCTGGTGTTTTCCAAATCTCCAGGCTGTACCTCCA-TGGTGAGCACATGAGAG--GCTGACTCACGCTTCCTGCAAGTCAGCGCAGATATCACCCATCCTTC-ACATGAGTTAAACCTCTGGCCACTCCCAAAGACAGCCCGAGTGCTGGAGTCATTTATGAGCATCTCTTCCAGGTCTCCTG-----------------TTTGCTATAAAAATTCAAAGAAGAAAAAT----GCCCTTTCTGCTTTGACCTACCTCCTGCTCCAGGCCCCAAGAGAGATGTCCTCAGC s bosTau2.chr10 60696310 582 - 70001009 ttcaggtgcacttgggacttatatgtctggaggcaaatgaatatacaatcctgacgcttagaggagatgtatagactaaagatgtGTTTGTCTCCTAGTCTGAGGGATTATAAAGAAAACAGAAGTATTATATTTTTAAGCTTATTTTTTTTTCAATCGCAGGTGTTTCCCCTTGCCGGCAGAGTTCTTTAAGCTTTGACAATAAAAAGGGCGTCCCTGTTGTCTACACTTGCAGGATGCATGTCTGGGCCAATCAATTAAAAAAAAAAAAAAGACTCCCAGTGTCTGATTTGTTTAGCTTCGTGTTTCCCAAATATCCTAGCTGTAACAACAGTGCTGAGTACATGAGAAAAGATGACTCATATTTCCTGCAAGTCAGCACAGATATC---CATCCTTCCAAATTATTTGAACCTTTGGCCACTCCCAAATAGAGTCAAAGTGTTGGAACAATTTATGAGCATTTGTTTCA--TTTGTTGAGAACAATTCTAGTACATCTGTAATAAAGATTCGGAGAAAAAAAAGAAAAGCTTTTCTTATCTTGTATCACCCCAACCCCCATATCCCAAACAAGGTGCAGTCACC a score=12987 s mm7.chr9_random 3386224 596 + 9745104 TTTACAGAAAATCTAAGTAAGTTATGTCAGGATTGGTTCAAATGCCATCTTT--ACCCCCTTT--CCTTTAGACTTTACAATGAGTATTCAA-TCCCCTGAGCGTCTGAGGCAGTGAGTCTG----CTTAGTGTGAAACTTGCTTTGGTCTGACTTTTATTAAAGTTCCTTGTCTGGGAGCATGCCTCTTGCCTCTTGGGTGTTCCTGTTTATGGACCACTATGTTCCTTCTGAGTTTTGCATGATACTTGGAACGTAATTGCTGGCTGAGGTGAAGATGTTAAAAGTT-GGAATCTGTCCTACCGTCAGAGTCTGGAGGCACAGATAAGACGTTAAACAGACCCAATACTTAAAGATAACCTTATTTGGAAGATAATTCCAAAAGAGAAAGTTGCATTTATGAA------GCATTGTTGAAAGAGGTGGA-TTATTCATTTAAGGAGAATGTTGAGAAGTGATAATTTTCAAATCTATGAGAAAATGCTGAGTCAAAGGTGGTGCTGCAGACGGCCACCCA-AGAGCAGGGACACCAGTGACCCAGACTGCTACAGGATCCTCCTGTTCCCAGCTATCTCTCTCAATCATCAGGTTTAGAATTGATTATTCCC s bosTau2.chr10 60697364 561 - 70001009 TTTATAGAAAGTCTAAGT----TCTCTCTTGATTGGTTCAAATGTCATCTATCCATCACCTTGAATCCATACATTCTGAATTAATCACTCAACTTCCCTAAGCTCCCACAGCAACAAATTTAGACACCTAGCTCGGAACTT--CTCAGTCTG--------------------CCTGGGAGCATACTTTGTGCCTTTAATATGCACTTATCTA-----CTTTCATTCCCTTTTGTGCCCAGCACAGTGCTTTGTGTATAAATGCCAACTGAAGTGAATTTGTAAAACGTTCTGAAAATACTCAACCAC----------AGACAATGATA----GTTAA---GATATACTACATAAA-ATAACTTCGTTTTGCAGATCATTTAAAAACTAAATGCTGAATTTATTAATAGCAGGAATTGTTGAGAGAAGTAAAAGCATTAACTTGAGGAAGATGTTGAGAGGCGATAATTTTCAAATTTGTGGGAAAGTGCTGACTCAAAGATATGACTCCT--CAGCCACAGAGAGGGTAAAGAGAGCAGTGTCTCAGACCGCTGCAG--CCCTCTTATCCTTATGCACTCTTCTCAAGTATCAGGTTTCGAATTTGTTATTTGC a score=19800 s mm7.chr9_random 3387043 739 + 9745104 ATTTCAAAGAGAATTACACTAGATTAATCTATTTAAAGACATAAATTGATGACAGAATCACGTGACTAATGCATTTCAGCGTGTAGGTTGAGTACATGACAATGTCACTCTAACACTGTTTCACAATGAACACAATTTGGCAAACGTGGGTTCTTCTTTGGAAGTCACCCAAAGCCTTTGGGAGAGCTCCTAAGTGGCTGCTGGAAGGGTTTCACACCCATGAGGAAGCCCTGTGGCACAGATATCAAGGACTACTTT----AAGGCT---------ACAGGTTTAAATCATTTAAAAAGCCAT------TGAAATGTCTGGTCGGGAAATTAAAGTACCAACTTTAACAGGTGGACAGGCCTGGGCTGTAAAACAGTGTGTGCTCCCAGCGCTATTCACGGCTCTCTATAAACATCCTTCATCATTTTCCTTCATGCATCATTTGAACTACAGTGTT--TTAAAATAGCTTCTTAGAAACAGCCAGATAGAGTTCCAGGTGTAAAGAGGTGACGTCACTTCAGAAATGGGATGGGAGTGAAAGTTCTAAGCCACATTCGT--CTATCTGGTTCCTGTCTATACTGTTACAACCCCGTGTCTAAGACACATTTGGGCCTTGGGTTTCTTTAGCTGTGACTGCGGTGACATATGCCTGGGATGTGGCCAGGACTCGAGACATCACTGCTAAGGGCTC-GTGGTGCTTGATGATCCTTTCTAGACGCACAGTCGAGTGTTTCTTATTGGGTTTCTGCCATTTATG s bosTau2.chr10 60698111 719 - 70001009 attgccaaggaagtcGCA---GGTTTGTGTTTTTAAGAAGAAA----GATGATAATCTGACAATGCCAATAAATTTCAGTTTGTGGATTAAATACACTGAAATGTCATTCTAACACT--TTCACAATGAATAGAATTTGGTAT-CATGTGTTCTGCTTTGGGAGATATCTGAAGATTTTCTAAAAGACCATCAGTTCTTGGTGGAAGGCTTTCTCATCCATAAGAAAGCTGCAAGGAACAGATATCAAGAACAGCTTTCTAGAATACTCTTCCCAAGACATGGataaattttaaaaaaagatataaaaaataaaCCTTCTGGTTTAGCACTTAA---ATCGA-TTTAACAGGTGGTAAGGATTAGGTGGTACAATAAT-TGAGTTTCCAGTGTTTTAAACTGTT--------ACTGGTTTCATAGTTTTCCTTCATGGATTTTTCAAGCCACAGCATTAAAAAAAATAATTTCTAAGAAACAACCAGACAGAGTTCCAGGTGTGAA-AGATAACGTAATTTCAGAAAAGGCATGGAGCCCAAGTTTCTAAGGCACATTTTTAAAAATCTGG-CCGTGACTGCAATGTTAGACTCCCTTACCCAAATCACATTTAGG----------GTTTAACTGTGACTACTGTGACAAATGCTGAG---------AGGACTCATGATATGACTGTTAAGGACTCTAAGGTACTTAAATGCATTTCCTGAGCATGCAGTCAAATGCTCCTTATTGTCTTTCTACTGCCTTTG a score=5409 s mm7.chr9_random 3389284 233 + 9745104 atgtatttagagccctcaacttaataactttgacatatgtgtatatatttgtgaccattg-tgcaatcaagatagtga-----acacatccatt-----------gccccccaatgtttgcttcatgatatagactctctctagcaatcacTGATTGGCAGATAGCTATGCCCTCACATTGGAGAGGAAAACATCATGGCTGACGT---CAGTAGGGAGGA-----------TGGTTAAAAGACTTCAGTTTTTgccaggcaga s bosTau2.chr10 60699524 260 - 70001009 acatatttaaagtgtgcaacttgcaaagtttgatctgtgtatacatctgtgaaaccatcactaccatctagatagtgatatctagacatccatccatccaaaagagttcccccttgccc-ctttatGTTATAATTCTCCCCTTTCAATCATTGAT---ACTACAGCCATGCCCTCACATTAGGAAGAAGAATCCTGTGAATGATATGGGCAGTGGGGAGGAAGGATCTATCCTGGAAAAGAGATTTAACATTTTGTTTAGTAGA a score=4271 s mm7.chr9_random 3389691 141 + 9745104 TCAACAATGGTATTATTTAATAATTTTCAGTGAAATTAGTGTATTTTTATCTACACAATATAATGTGATGCCCACACATTTTT-------TAAACAATTTGAA---------CTAT-ATTTGGTGAACTCAGTGTTGAAGAGACTCAAACTTAGATTT s bosTau2.chr10 60701500 156 - 70001009 TTAGAAATTACATTATTTAACAATTGTCAGTGAAAGTG--GTATTTCTCCATATGCAGTCTTACGTGATGTTCACTTTTTTTTTTTTTAATAAGGAAACTGAAGACCAGAACATATAATTTGAACAATTCAGTGCTGGAGAGGCTCAATCCCAGGTTT a score=17141 s mm7.chr9_random 3389865 713 + 9745104 CTCTGGTCCATATGTTGTCTAGAATATAAATATAGATGCCATTCTTCAAGTACCACTCACTGTTCCCA----GCTGCTTTGTT---CCCTACTTGCCATTCAGTGGCTTCGGCCTGCAGTTAGAATTAAGGATAGTC----TTGTATTTCTAGGCCCTATACAACGGAGCTCTCA-----------ACTC-CCTCTCTAATCTAATGGAAGGCTTCTCCAGGCAAAATACATTTCTCATCAACACAGATTCCTCGCAGTTCTAAAAGCCAAGCTCCTCCCTATTGCAGGTTCTCTGCATGATCTTTTTGCTTTACTCAATTCTCTGGGGCCTTTCTTCCATTACTGGCTTCTTCCTGCACTTCAGAGAGGCACAGCCTTGATCACTCTGGTTTCAAAAACCACCCTGTTATCTGCTA-CCTAGAATTCTTCCTAGAACTTTTAT-----GTTTCTTCTCCAAGCATTAAATATATTTGgttgttgttgttgttgttgttgttgttgAGCTTCTCCCACTAGACC-TCAACTCCCTC----AAAGCAGACCTTTTCTGGTTCCCTGACTGTTGTGTGTCAGCCCTGCTGGGTTTTCCAACAATATTGTCTGGATGAATGAGTCCAAGAGAAGGAGTGGAGGTATAAAATAAAACTGTAATCTCGGTTGGCAATAAAGA-TGAAGCCTGTTTTGCAT---------AGATTAACTTCAACCTAGAGGAATTTTTTTTTAAAAGGTCCTATTTCTTCCTT s bosTau2.chr10 60701897 715 - 70001009 CTTTGGCCCATATATTGCTTGAAATACAGACACA-ATGTCATACCCCAAACA----TCACTGTTCTCAATTCGCTGCTCTAATAGGCAGCCTTTCctcttcaatagctttcagctgcaattacaataaaatccagtcgtctttgtcttcctagggcctggggaaatgggcccttacttgcttacacactcacctcttcagtatcatggcagactcctctttgcaccacagattccctggcactatggactccactccgttccaatagccaagttccttcctaccacaggtcttttgcatagccattttctctgccttaattctccagggcatttctcagattactggctccttctcatccctcagatggat-ctttcccgaccacttttttttttcaaactatcctggcatttgctctcccagaattctgttcatagcctttatagcatgtttct-ctcaagatctcatgagtattca-------------------ctgtccctc--cttttcccactagactgtcaactccagtctagagagcagaccttttctgttttcctcaccagtgtgtcccctcggtttttgagtttcagtgaatgtttgttgattgactgaatACAACAAAAGGAATGGAGATAAGAAATAAAGCTATAAATCCGGTTAGTAGAAGGGGTTAAAGACTATTCTGCACCATTTAGGAAAGTTGACTT---------GAAACCTTTT-----AGGGTCCTATTTCTTCTTT a score=2595 s mm7.chr9_random 3443482 94 + 9745104 CTTAGTTTGTCTATAGTATCTCTAGATATATCTACTT----------CTTCTTTCAACATACTATCTTAATTCTTTTCCAGGAAACAGACT--CATACCTATGAAC s bosTau2.chr23 4245809 105 + 41602928 cttagaataaccatcatatttctgggtaaatttattttgtataaagtctctgcttaatataccattttaaat-tttgccaggaaatatacttacagatctataagc a score=55306 s mm7.chr9_random 3443603 1928 + 9745104 ATCTTGAAACTTTTACTTTGCTC-ACCATCAGTCCAGAACAATACTCAAATCTTATTGAACTAAAAGTAAATAATGCTAGTAAAGTATT-GTTGA--GTCTCCTCTGGCCAGG--------TCTGCCAGTGCTATTTTCTTTGTGCGGGGGTACAGTGTGAAAGACCAACAGATAAGAGAATGTGAAATTTCTTCAACACCTGCCATCGATTAGTTCAAAAACATAAATGATGTGGTTTCAGACCCTATAACTCAAAACTCAATATGAGCAGCAATTCCTCTTAAAGGTAACA--TTTGGAAACTCAGTAATGGGAAAAAAATGAGACTGGAGTGCTTCCTGACAATCCTGGGTGAGAGTGCTGTAGGCAGCTCTGAATAGCACTATAGCCTGGGTCCTATAACCATGTCCCATTCATAGACGCCTAGCACAAACCTCATCTATCTTAGCCTCAGTAGCACAGAGGAAATCTTGGTCTGCTTGAAGAAGTAAGACACTCTTAATAAATCACAGCCTTACAATAATAAACACAGGAAATCTCTGGAAAATTGAACATCCTTTTTTTTTTTTTTTTCTACCCAATACCCTG-CTTGGCTGCCAAAGCTAAAACTGTCTGACACCATATTCACAAAA---CTTAAGTCCAGAAGCCTTAAAACTAATTTGGTCTGGTGTATAATTTCCTGT-CTCCCTTATTCAACTCTACCTCTGTATGTGATGGACCTTTATAATGCCCTCTGTCGGATGGAATGTCCAAGTGTCTCAAAATCTTCC---------ACCACAACTTCCCCTC-CTCTATCCTTGTGAA----AATGAGAGATGCTAATCATAATTCA-TGATGTCTACAAATATTCATTTTTATATTGCAAGATAATCATCACATACAGG------AATGGATTTGTGGGTTTAAAACTGTAACACTAACGTCTTGGAGGGAAGAAATGAAAGTCTTCTTTATCCAATAACATCC------------------------------------CAGTTTGGGAAGATAAACATAGCAATTATATATTTGTTATTTTTTATTAGGGTCAATGCCTTTTGTAACTACCTGCCTGATCTTCCAATATTAAAAATAACATGTTCCTAACATCATTCTAAAGTAGGGGCAAAAAGTCTCAAAGCTCCCAGTATAATTTTCCTTCTGTGCCTATGTAATTGTGTTGTCTCTTGTGTATTATGCTTTTGTACATGATAATAATGTTGCCACTGTTGTAATTTCCCTTACATGGAAGCATGAGCAATTTTTTAAAAATAGTGGAGCAAATTGCTTTCAGCATGTTT---TGTTAATAGAGTTT----TGTATTCTTCATGTTTT-------AAACCT-----ACAGCACTAGAGA---GAGCTACAGCAGAGAGCGTAAGTCTGGGTTACTAGGTTAATAACTCAGTGCCAGTCAGATATTACCAAGAAGAAAGAGCAATGACAAAAGCAAAGTCTCATTACCATAGAAAGCATTGCTGTTG----------TTGTAAGCTTGAA-------GCTTGGGTATAATGTGGATGCTGGAGAGTTTTGTTTTAGTAAAC---AATGAAGGCAGTACTTCCAAGGGT--GCCAGCTTACCCAATG---GCATCCCATTCAGCGTATACTAATTATGTGATTCTGCCAGATTGTAACTCATTT----ATACTCACCTGATTTTTAAATTTCTTTGTGTGTTGTTATTCATTTTCCAAGCAACTGTATCCCACCTCCACCCACCTTAACATTATAAT----------TACAG-TTGTGC------CTACACTGTTATTCAGT-TTTGAGTCTAACAAAGAGCTCTATATAGTATTTAATACAGAAAAAAT-AAAAGCATTGAGTGGGAGAATGAATAAGTGGAAAGCTTCCAACACAGAGAGAAATTAAAACACCTTGCCAAATCATACCAGAAAGGAGGAAAAAGTGGGC-CTCAGATTTTTCTACTTCTTCATCAGAAAGTACA-----AGTTAAAC---AACAGACATAATGGTATTCCC-AAAGTACAG--------GGAGCCTGGAGGACATGG s bosTau2.chr23 4245953 1949 + 41602928 ATTTGAAGGATTCCTTTTTACCCCACCATCA-CCCAGGACAGCATTCAGATCTTCACGGAATGA--GCAGGCAGTATCAG--AGGTATTTGCCTACTATCTCCACTGGCCAGTGAGATATCCCTGACAATAATACTTTTCCTC-------ATACAGCAGGAGGGATGGATACA-----GGATATACCATTTCTTCAACACATGCCACAGATTACTATACAAATGTAAATAACGTGGTTCCAGACCCTATAACTCAAAACTCAATTTGAGCAGTAACTCCTCTTAAAGGTAACACATTCGTAAATTCAGTAATGAGGAAAAAATGGGACTAGAGCCCTTCCTGACAACTGTGGGTGGAAACACTTTACCCAGCCATGAACAGC-TTGTAGACTGGGTCCTCTAGCTCTGTCTCATTCACAGACCCTTTCCACAAACCCCATATATCTTAGCCTCAGTAGCACAGAGGAAATCTTGGTCTGCTTGAAGAAGTAAGACAGTTTTAATAAATCACAGTCTTACAATAATAAACACAGGAAATCTCTGGAAAATTGAACATCTAGTTTTATTTTTTTTTCTACCCAATACCCTGTCTTGGCTGCTGCTGCTAAAATGGTCTGACACCATACTCACAAAACTTCTTAAGTCCAGAAGCCTAAAAACTAATTTGGGCTGGTGTATAATTTCCTGTGTTTCCTTATTTAACATCATCTTTGTGTTCTCAGGGCCTCTGTAGCGCCCTCTAAGGAAAGGAATGCACAAGCTTCTCAAGAGTGATCGGAGCAAATAGCATAATGACCCCACACTCTTTTCCTGTGAATGCCTGCAAGCCATTTTCATCATAATCTATTAATGCCTACAAATACTCatttttaaattataaaataa-------atCCAAACCACCCAATGGATTTGTGTGTTATAAACTGAGAGACCAATGCTCCAGACAG-AGAAACCAGAATC-ACCTTATTCATTAACATCCCCCCACCCCCCACCACCCTACCTCCCACTGCCGCTACCATTTCCTAAGGCAAATATAACAAATATGCATTAGTGATTCTTTGTTCAGGTCAATTACTTTGGGGACCACCCTCCTGGTCTTCCCAAGTCAA-------------------------------------AACAAGTCTCAAAGTTCTCAGTATAATTTTCTTTTCATTC------AACTGTGTTGTCTCTCATATATCATAACTTTGTGTTTGTTAATAACACTGTCAATGGTGTTATTTCTCATGCATGGGTGCAGAAATGCCTTTT--AAAATATTGTGTCTAATGGTATTCATTCTGGATGACTGTAAATGGAGTTGCTCATCTATACTTAACATTTCCTCCTGGAAGCCCCTCTGCCCACAGTGGAGACCTGTGCTGATGAGAAGAAGGGAAGACTGAGTTATTTG-----------AGGGACATTATCTTACTGGCAAAAAGAAAGAGTTGTAGCAAAAG--GGTTCTTAATACCCTGGCAAGTAATGCCATCAGGACAATAGCCTATAACATCAAACTGCAGTGATCTGGCCTCATATGGAT-CTGAAGA-------TCCAGTAAGCAGAAGAGAAGACAGGCCTTGAAAAGATTGGACAGACAACCTCTTGAACACAAACCGCTTAACATATTCTGATTACTAGGTTCTAGTTTATTATAGTTCACTTACAGATATCCACTTGA------------TTTGAGTGATTTTATTT-----------------------CCATTACCCTTTTTAACTTTACAATTGGCTTATTATACAGATAATGCTATCAACCACAC-ATTATTTAACGTCTGAGTTCAACAAAGAATTCAATGCAGTGTTTAATAGAGACATAATAAAAAGCAGTGGATGGGTGAATAAATGAATAGAAAGAATCCAAGCCATAAAGAAATGAAAATACTTTGCCAAATTGTATCAGAAA-----CAAGAGTCAGCTCTCAGACAT---------CCTATTGGAAAATATGTATGTTGTTATTTCTAAACAGATACAGTGCTGTCACTGAAAGCTCAAGAAAACCTGAAACCTGGAGGATTTGG a score=5097 s mm7.chr9_random 3445649 241 + 9745104 ATCTAAGATAAGTAGTATTAATGCTGGAGTATGATTAGCATCAATTTACTTCAACATATTTGTATTTCAA------------------------------------------------------------------------ATAACCTATAGTCTTTTTCAAT--CAAATTTGAATTTGTCTAGGACAGTTATTAGATTAATATCATTTTCTCCAAAAAATATCCTCTGCATTAACAAT---TAAAACCCTTAAATTCACAGCTCTCATAGAATATTCTGTTATTCTAAGAAAAATTTTATTACAATCATC--TCAATT s bosTau2.chr23 4248012 316 + 41602928 GTCTGGAGAAAGTAGTATTAATTTTCTCAAGTTGTTAGCATGGATTTGCTTCAGTATGTTGCTATCTCAAAGAATGGTTCATTTAGTAGTTTGAAAAGCAAACAGGAATGTGAGAGCCTAGAACAATTAAAGCAACATAACTATAGCCTATGACCTGTTGCCATTATAAATTTGAAGTTCTCCAAGATGTTTACAAAACGAACAGCATTCT-TCAAAAGAATGCCCTATATATTGACAATGAACAAACAGCCAAAATTCATAGACATTACAAAATATTCTATTATTCT---AAAAATATAATTCCAATTAGCCTTCAATT a score=10728 s mm7.chr9_random 3446300 651 + 9745104 TATGAAACTGAGTTTGAAAGTGGGTTCAATTAGATACAGAA---GGGTCTTTAAGTTGTGACTAAAATGTTTTTGAAAGTTTATTTCTATTCTTCATGGCTAAACAC--AAAAATTTTGATGAAGATAACCAATTCAATAAAAACTGAATATAGGATGAGAGACAATGTTTCATTTATAACATTTCA--TCCTGATTGCTTTTATATGTTTAAGGGCAAAGCAAATCTAACTTGTTAATGGAAAGGTAACTAATCAAATTAATTAGTTATGTTATTGAAAAGCA---------GAGCACA-TAAATTTTTCAGTGGAATAAAATT-----------TAGAGGAAAGGGGAAAAGTATAC----------CTTCTGC-TTAAACACTTAAAATCTAAATAATGGCATTGCTAGAATGCAGTCT----------GCCTTGC--TTTACCTTTGAGATAGTAGTAAAAGTCCATTT----TAGACAAGAAATTACTGTTTAATGCTGTGTAATATAACAAAGTGTTACTAATATTTTT----CAATTTTATTGAAGATT---AATTGTAATC-AAGCTCAAGAGCAGAAAGGTA-------CCATAATTCTGTCTAAATTTTGTCCATATTTTC--TTATCTTTCTGAGAAAAACAAGGGAGTTT--TGAGGTTTTTGAATATGCTGCAAGCAGT-TGTTTGCCCTGTATGATAATATAAGCTAACCAG s bosTau2.chr23 4249240 684 + 41602928 TATGAGGCCCAATTTTAATGTAATGTTAATCATATACAAAAATTGAATTTTCA---TATGATCAAAATGCCTTTGAAAGTTTCTTTCT----TTCATGGATTAACTTGGAGAAAATTTG----AGAGACTCAAATAAATAAAAA-----------GTGAGATAAAGTATTT------GAACATTTTAGGTCCT-----TTTTTATA-ATCTAAGAGCCAAAAAAAGACAAATTGTTAGTCAAAATGTAATTGATAAGATTAAGTCATTA-------GAAAAGCAGTGTATGCTGAGCATAGTAACTCTTTGAGCAGAATCATAGCTTTTGTCCTCATGGAGAAAAAGTCAAAAAAATATTGAATTGTAGCTTCAGTGTGAAAAAAATAAAATCTACCTAGTAGAATTGCAACATTATTGCTTTTCATTGTAAGCTTTGCTTTTTGCTTTGCACACACAAGTGGAATTACATCTTAGGTAGAGAATAAGTTACTGGCGAATGCCAAGTAATATGTACAAGACTAACAACTCGTTTTCCCCCAATTTTTTTGCAAAGTAAAAATTGAAAGCAAAGTAAAAAAGAAAAAAAATATTAGTGCCCACAATCCTAG-TACATTTTTTTCATATTTCTGATTGTTTTCCTGAGAGAGACAAAAGTGTTTAAAAAAATCTGTGACTATGCTTTAAGCAATCTGCATATCCTCTGTGATAACAGTGGCAAATGAG a score=36438 s mm7.chr9_random 3449522 1109 + 9745104 TCAATCTAGTAAATGTACTTCCATTTC-AATAAAGAATGATTTGTCCTCCACAGTAGAATGAGCACTGGGACAGGTG---ACAGGGGCTCCTGGTTGGTGTGTACCTTGATCCTACTTTTAAGTGTTAGAGTGACTTGTACAAAAAAGAATGCTACAATCTTTTATGTACATTTTTTTCTACTCTTGTAAAGAAAACTCACTTCTATCCCTTTGGGAAGACTTCTTATCCATGTGTTGCAATAGGTAAACGCT---TCATCAGGGACAAATAATATGTAAAATTGACCCATTTCATTTGatacatacatgcatacacacatactcacacacacacataGTGTATTATATGCTTAATTTATTTTTTATTTTCAAACAAA--GTAG-CATTCATGTGAATAAA--------AACAAAAATGTTAATATC-----TAACACAAAAATTTAGTTCACTTT-AGAGATTATGATAGTCACAATAATTTCAATAGCTTACGATTAACAGACACATTCCAAATGTGCAGGAAATCTGT----TTTTA-----ATGTGTTTTCTTTCTCATGCTAT---TGTGTGTTCCATCTAAGCGAGGGGCT---------------ACCTGGACTAACTTCAAATATTCTTATGTTACATGTCACTCTAAGGAAATC-TTTTTCCAGATAACTTATAAAGAACATGTATTTCTTAATGGCAGGCATTTTATCATCTGTGATCATTTAAATTATAGGTGTAGGATCCTGTTTTATATGGCACCCTGCTACTGCGGACCTTTTCTTTAAGCTATGTGAGTTAG-ACAGCTCCTGCCAAACAAAACAGTGGGAGGGGAAA---AAAAAAGCTTTAAAATGCTAAAAAAAGAAATAAGTGAAGAAGCAGCAATCTAAACATTAGCTGGAGGACTATTCCCATGACCCGCGTCTGATGCACAATCAGCTCCAGGGAAGCACAGGACTCACAGAACACTA---TCAGACCTCATACATTGTCTTTAGAAACA---GAAATCACTCAGGCAA---CACATACGCAGCTGCTATAGCAAAATTA-CGAAATGCTAACCTCAGATACTATTTT--------AAAGGTCTGTACTATGTGATGTTCTTCTAGAAGGAGAATGAAAGAACTTAGAGAAATTTTTAAAATGTAAGTGCAGTTAAATCTA s bosTau2.chr23 4251002 1132 + 41602928 TCAACCCAGTAAATGTGTTTTCATTCCTAACAAAGAATTAATTGTCTCACACACTAAAAAGAGGACAGGGAAAAGTTTACACATTCCTTCTTGCTTACACTGTGTTTGGGCCATATTTTTAAGTGTTAGACTGATTTGTA----AATAATTGTTACAGCCTTTTATGTGTATTTCTTTCTACTTTTATAGAGAAAAACTATTTCTGCCCTTTA----------CTGACCCACCTATTCCAACAGTTAAAAATTAATTAAACAGGGAACAA--ATATTTATAACTGAGACTTTGCATGTGACAGATATAAACATACA----------------------GTGTCTTGTACCTTTCAGGCATTTTT-ATTTTTAAACAAATGGTATTCACTCATATGAATGAACATGTTTAAAACCAAATGGCCACATTAAAGATAATGGAAAACTCAAGTTCACTCTCAAAAATTATTGCATTTATAATGATTTAAATAGCTCATTACTGAGAGTTCCATTCCAAAGTTTCAGTAAACCCATAGAGTTTTATAAACACATTTTTTTTTCCTACTGTTACCGCTGTTCACTCTATTGAAGTCAGGAGCTCATTTCAAATGAGCTATGTGGACTCATTTCAAATGTCCTTAGATTATATGTCACTCTAAGGAAACCCTTTTTCCAGATAAGTTGTAAAGAACATGTATTTTTTAATGACAGGCATTTTATCATCTCTGGCCATTTAGATTATAGGTGTGGGATCCTGTTTTATATGGCAGCCTGCTACCGTGGAAATTTTCTTTCAGCTGCTTTAGTTAGAAAAGCTGCTGCCAAACAAAACAGTAGGAGGGAAGCTGTAAAAATGCTTTAAAATGCTAAAAAAAGAAATAAGTGAGCAAGCAGCAATCTAAACATAAACCAGAGGACTCTTCCCATGACCCACATTTAAGGGAAAGAAA---CAGAAGATGCAGAGAACTAACAGTATGCCAATTTCAAGCCACACTCAAGATCTTTAGAAGAATTCGAAATTATTCAGACAATTGCACGTA---AGCTGGTACACTAAACTCATCCTGACACAAATCTCAGATGTTTTTTTTGAGTTAGACAAGCCTG----GTGTCATGATATTTTCTCAAAAAAATG--AGAAGTTATAGAATCTGGGAAAATATATACATAGGTAGATGTA a score=5163 s mm7.chr9_random 3450717 175 + 9745104 CTGCCTTAGGGAAAACACCCCATGTGTACTGTAAGGTAAAGCTAGGCTACTGTGACTTTGAGAGGTGAAGTTTGTAATATTTGTCTTTGATTCGGGAACACTGCTCTTTTGTGGCTAT----GTGATTTATGT----AAATCACTTTTTTCTTT--------AGATACATGTAACCATATGAGGTTTAAAA s bosTau2.chr23 4252650 180 + 41602928 CTGCCCTTTGAAAAACTCTTGATGTGTAGTAATAAGTAA-------CCAGTATAACTTTGAAAGTTCAATCTGATA----TTATCTTTGATCCAGGCACACTGTTCTTTTACAGATAGAGCAGTGATTTATTTAATAAAAACACTCTTTTTTTTTTGGTTTGGAATGTATGTAACCAGATGAGTATTAAAA a score=9648 s mm7.chr9_random 3451014 529 + 9745104 CCTGTACTGCAGGAATGTGTGCTAGGCTTTctaaggttcagagaggttaaatcacttactcaa-----aggcatggcacactgtggataagggcacaattctagaaccATCTCCCCTCATCACAGATATCCTCAGGAGCTATGCGAAGCAATTCAGTCAACTTATTTAATATTACTTTAGGTTTAA-AATGGGCTCATTAATTTTCAGTAGGCTAA-TCCCAGATTCAACTTGGGACCACATGCAGAATAAATTATGTCATTTTGTATTCCCATCCAGTATATTTATTTAA-GCAAGGTCAGGAGGCATGATCCAGTTCCTTCTTATAGGGAGTCTTCCTTTCATTTTCTTTTGTCATATTTTCTTGTCATTAGCTACAAGAGAGTAAGTGTGGCCTTT-TAGAGATTGCTCTATTCTTATTCTTTCAGATGTCTCTGTGAGCATCATCTGTGAGTCTGAAGGATAGTCtataaatcaatttttattattatataataGTAATAGCGTGAAGTCATGGGCATCATCTTATTAGGAAAA s bosTau2.chr23 4253105 520 + 41602928 CCTGCGCTGAAGGCATCATTGCTGGGACTGCCAGGGTTCAAAGAGGCTCAGTCACTCACTCCAGCTCCGGGCGAGGCAC---------AGAGACACGGTAC-AGAGGAGCCTCTGCTCTGCACAGCTGTCCTCGCGGGCCGTGTGGGG-AACTCAGTC-CTTTATCCAGTAATACTCTGAGCCAAATGTTGAGTTCATGACCTATCAACAGGTTAAGTCCTGAATCCACCTCAGAACCAAGCCCAGAATGAATCATATTATTTTACGGTCCTATCACAGGCATCTACTTCCTGTGAGGCCAGAAGGCATTTTCCCATTACTGCTCACAGAGGGATGGCCCTCCCTCTGTTTCGCTCCTTTGCTCTTGTTAGGAGCTGAGTAAGAAGAAGAGCAGCCTCCGTGCAAGGGGCTCTCACCTAGTTCTTCTCAGCGGCCCTGGGTGTGTCCCAGCTTAGGCTCAAAAATAACCCAGCAAGCAATTACCAGTATAGTGGAATGAGA------TAATTTCCTGAACATCACCATAGTCGAGAGA a score=9321 s mm7.chr9_random 3452840 1100 + 9745104 CCTAATTTTATAACTATGCCAGTGTGTCC--TCTCTTCCCAAATGTAATTGAATGTGT-AAAACAGCATGAAATGATCTATAAACAGAA-TAACTTCTTCAATTCTTAAA-GATGATGAAAATTTCTTGCAGTCCCTTAAAAATCAATGTCAGCTGGTGAAATA-------TTTTTGTTTCTCAAAATAA-----TCAGGAAAACATATTTATATCAAGTAA------TGTGTTCTTCGAAGGAAGATATCTGTATACTTAATTATATGATAACAGATATACACATAAAAGGCAG-GGCTGCTTACCTATACAAGAAAATTGCAAAGAATATGTTGCCATTCCTTCAAGCTGACTGATTCACTATTCATTTCACAGTGATTTTACTGTATACCTCCCTGCTA-TAGCCAAGCACTGAGG-----ATGATGAACCAAAGAGGCAT--------TATCTTCACACAACTTACGGTACAAATAGTAAATGATCAGAGAAGATTTATAAATATATAGAGAGGTTTATGACTTAAGTACCAACAGTGACTTGAAGGAAAATCA---CTATCTGACAAGAAAT--------------------------------------------TAGAGTAACTCCG---------TAAAGAGTCTGTG--------------------------ATTCCTAACCACATAGTGTTTTCTGTTACATCAAATGCATCCCAGCCAAAAGGACTCAGA----------GTTTTTGCCATTTCACATCATACTGTTAGAACTGCCGGAAAATACAGACATTGAGAGGTAACTAAGCAAATGTGTGTGTAAAGTGCCTTGTATGATAGTACCCTGTCTAAATGC-----CAGGA---AAATAGGAACAAGAATCGGTTCAGGTTAGCAGGAGTTTCAGCAAAGTGAATTAATTGTATTAATAGAGCTCAGGGTTAC-TAG-GAAAACTGGAGTCACATACAAAGACTTGAGTGTGTGTTTTCCAGGCTCTTC---CAGTGAGAAGGGAATTTTTAAAGAGTT-AGAATGTGTTTCTCAGA-----TATATTCCTGGAAGCCTATTTTAGTCTCTATAAGTAAGATATATAAGGAATGGAGAACGATGCTTACGTACTCCATGTAATATCTTGTGGGTTTGTGGAT----------------TGTGGGTCGGTAATACATCTGTGGAATTGAA---------ACAAGTATAGAATAT---AAAGGAGATTAACCTCTTGCACATTTATTTGTGTGT s bosTau2.chr23 4254003 1183 + 41602928 CCTTACTCTAAAATTATACCAGCCTATCTAGTTTCTCTCCAACAATAATCAAATACATGAAAAGAGCACTAACTAAACAAAATACATAGGCAATGTCATGAAGACTTAAAAGATGATAAAAAGT-CTCACA----------------TGATAGTAAGTAAAATAATAATAGCTCATAGTTTGCAAAATGACAATGTCAAGGAAATAAGTCTAGTCTCATTAAGCTGTTTGTGTCTTCCTAAGGAAATTATCTGTAGCCTTTGTAACAAAAGATTGAATACACAAACAAAATTTAACAGTCACTTGTCCATATCAAAGGATGG--AGTCATGTGTTATTATGATTTCAGGCTAACAGGTCCAttattcatttcatagta--tttattgagcacctacttactagtcatcaagcaatgggggcacagtgacagtcaacagagacatggtcaagatttctttagcc--ctcatagtctgggaagcagatcctgagacagcatttataaa-atatatatatgattataaat--ggtggcatttggga--tgaagaaaagtCATCCCTTTATTTTAAGGGATCCCTTTATCCTTAAAATAAAGTTATCCTTCATTTTAAGGATACATAAAGTAACCCTGATATTTGAATATTGAAGCTGTGAAAACTGATGGATTACTATTAATAATATTATTCATCCTTTTGTGGTCTCTGTTGT-----TTGCAACACCTTAAAAAGTACTTAAAAGCTTTTAATGTTTTAAGACTCTTACACCATCTTGTTATAACTGAAAAGCAAAGCAGAACCTGAGATGTACATAAGAAAGCATAAATGAA---------GCACGAT-----------TAGATACAGAGGCAGGATATGAGCAGGAATAAGAGACAGTTTGGTTTGGTGGAAGCTTCTGCAAAAGGAAGT-------------------AGGGCCACGTAGAGAGACCTTGAACCCCAGGCCAGG--------------TTCCCAAACTTTTTAAGCAAGGAGAAGGGAGCTTATAAAGAGCTGAGAATGTGAGTTTGAAGACGCTGGTATTTCTGGGAAGTTTACTTGGAAACAATGGGCAAA--ATGCAATAAAGGAGAGACAGTGCTTACAAATATCATTTAA------GGGAATATGCCAATAATTAATCCATAAGGGTATGGATTACTAACTCATCCATGGAGTTGAAAAATAATAGATAGGTATAGGCTACATAAAAGCAGAGACATTACTTTGCCATtagtatgtatgt a score=7192 s mm7.chr9_random 3454512 662 + 9745104 CAGCAACTAATTAGGTATAAAAGGTAATGCCTGGGAGAATCAAGCACAGGATTCTGAGGGGAACAGATGAGCTCTCGGCATAAGGCAGTGTGTGATCG-TAATAAGCCTGGATTTGAAGCTGATGACATAGAGATGTCAGTGTCCAGTCCAGTTGAAGTTCATCAGAAAAG-CA-------------AGCCTTTTCTTCCTCAATGGAGCAACTATTGGCA-TGAGAGACACAGTAAAGAGAGAGATGAACTTTCAGGCATGAAAA--------------CAGAAGAAAACAAGTAAT--TAATATGAAATCAGCTGACTAAAGCGAGC------------------AGAGGAC--AATAGGAA--CATGGTACTGGGAT-CAGAAGTAACTACTGAAATGAAAGACAGGGGAGACACTTGGGG---------------------------------------TCAGGGTGCTGACACTGGGTTAGGCAGGAAGA-GGCTAAACTGATCACTAATTACCAACCTCAAAGACTAATTACCTCAAAGATGCTAATCAAGACTCAGGATTGATGAGTTAAATTCAGTGTATGA---AATTGTGAACAACGCTATAGCACCTTTTCATTTTTAATGAGATGATTGAAAATGACTCACCT---CCTCT------TTTGTGTGTCTT-ACACATTACATG------------TCAGCAAATATGAATGATAGATGAAACAAATGAAGAATTACCTCTATGTTGCTCATCAGCTAATGTGAAATTCTAT s bosTau2.chr23 4256013 740 + 41602928 CAGTAACTGACTAGATATAAAAGAC----TCTTGAGAATTTAAATCCAAGATTCTGAAAGGAACA-ATGGGCTATGAGCATAAAGTAG-----GATCAACAATAAGTATGGTTTTGAACCCACTGAGTTTCAAGTGCTAATAGCATGTCCAGCTGAAGCTCATCAGAAAGGACAGAACTGGAAACACAGACTTGTCATCCTCTCAGAAGTGACTGTTGATATTGGAAGGGTCAGAAAAGAG-GAGAGCAG-----AGGCAGGGGAAATTATTAAAGAATCTCGAGGGAACTTGGTGGTGGGGAAATGTTGTTGGGAAGCCAAAAGGAGCTTTAGGGTGGCAAGTGAAGGAGGATTGAAGAGGAAACCAAGGGAGCAGGATGAAAAAGTAATCAGCGAAGTTAAGTTCTGGGGAGAGACTAGGGGACCCAAGGAATAAGAACAGGGTTCAAGGAATCCGAGGATCCAGGGAATGAGAACTGGACTAGGAAGGGAGAGGGGTTCACTGTTGGCTAATTATTAATCAC-----------ATTTCAAACATCAGAGCCAAGTCTCAGAAGTGATGGCT--GCTTCCATATGCTAGCCAGCTCTGAATAAGACTATA--------TCCTCTTCAA-GAGAAGATTCCAGATGACTCCCTTTTGTCTCTGATGAATCTATGTATTTTCATCAATTATATGAATATATATAAACTAGCAAATATAAGCATTA---AAAAAGAGTGTATATCTA-TTATACATTTCTCACTGTTTAAAATGGGATTGTAT a score=19197 s mm7.chr9_random 3455523 490 + 9745104 ATCTCACAGTGTTCACAAAACTTAAACA-TGTTAAATT----------TTA--TAATTATAGATTTGAATACCTGTGGTACCCATCTGGAAGACACAAAGCTGGTTACTTCTATTACAGACAAGCCAGTTTGGGAAAGTTGATTGATGAGTTCAATTTTTATGTCTGTGGGAACTATAACCtaaaaaaaaatcataaaacattatataaaataattatataaaaaCTACTGAAACATAAA---ATATTACTTCCCAATTGGAAGCAAATAC--ATTATGATTTAAAATGTCAAACAGTCATC---ACCACAAA-AACTGCTGAAAGTATAAAA--CGTCTGTGCCATTCAAGTGTTA----------------------TGGAATACACTATATAAAGGCTATATAAACCTACCTTTTCATTCTGCAATCCATCCCTTGGTCCAACTTCGACTATTTTCACATATTCAGGGAGTCCAGGTAACTGAGATGCTTCCTGAAATGCAAGCAGTATGAGTACAAG----AAAAAAGAGATCACT s bosTau2.chr23 4257918 526 + 41602928 ATATCACGCTGGTCACTAAATCTTGGCAGTGTTGGATTAAGAATCCAGTTAAGGAATTACGGACTTACATACCTGTGGTATCCACCTGGAAGACACAAAGCTTGTCACTTCTATTACAGACAAGCCAGTTTGGGAAAGTTGATTGATAAATTCAATTTTTATATCTGTAGGAACTATAACCTAAGAAAA---CATGAAAAATTACAT--GTTATTTGCATAGCGTCTAA-GACACATAAATAGAAATTAATTCTTAACTGAAAGTAAATACTATTTAAGATGTATAAATTCAAGTAGCAACTGAGAACACACATAATCATCTAATATATGAAATCCACATAAGCCTTTAGACTCTGAGTAAATATTTAGATTTAACATTTTAAGTAAACTGTGTAAAATAAACATCAAACTACCTTTTCATTCTGCAATCCATCCCTAGGTCCAACTTCTACTATTTTAACATATTCAGGGAATCCGGATAGCTGGGCTGATTCCTGAAATGGAA--------AATACAAGGCAAGAAAAAGAGATAACT a score=12944 s mm7.chr9_random 3460719 662 + 9745104 tgtgtgtgtgtgtgtgtgtgtgtgtgtAACAAGGAAAGAAGCTCACTG---GCTTATTTGGCATCTAAAGTTGT-GATTGGCTTGATTACCACCCTGTGCTAACT-----TCTTGAAAGAATCCAGATAATCCCTAATACAATTCCAACTGGCCTTCTTCGACAATTTCTGTGAAACTAA--AATTCACTATCAAAATGAAT-AACAAAGAAGGAAACAAATTCTCACTTCTGCATCTTCTTCTCCAGTTGTGAGGCGTGGAGCTAACTTGAGAGGGTGGGG--CTGAGAGGGGA-------GGATCCTCGGCTATGAGTTTGGTTCTGGATGACAATGCTGCAATCATGCCTAATG-ATGGAGTGGTTATAATTT-GGCCAAGAAGTA------AGAGGTATGGCATGCGCAGATAGAGTAAGGGGACACACCCCCCCCTTTATTTTTTATTAACTCTCCTCATCAAATAAGAGAAATGAGACCAGAGCAAAATCAAAACCAGGCGATCGTAA---ATGTGATCTCATTATC----ATTGTTTCC----ACTCTGTTTTCATCATGAATTATCTTCCAGCGTACATGGACAAAGAGTACTGCTTTATTAAAGGGGGCTGCTTTCCCAAAAA-AGGAACACAGTG-TTTTGAAGGTGAAAATTATGTGCCATGTATAATTAAAGAGTTGGGTATTTCCCTTTGC s bosTau2.chr23 4259550 672 + 41602928 TGGGTGTGGGACTCCGTTTGTTTCCTTAACAGGAAAGAACATGCCCTGCCCGCCCTTGGAGGATCCATAGCTGTTGCTTGATTTTATTAGCATTCTGTGCTAACTAAACTCAGCAAAAGAACCCTGATGGTTTCTGTTACAAAGTTTACATACCACCCTCTGCAATGTCCACAAAATCAGGCAGTTCAATA--AGCACAAATTAACCAAAAAGGAAATGAATTCTCATTCCTGCATCTCCTGAGCAGGTTGTGATGCATGCAG-----TTGGGAGGGTGGAGGCTTGAGTGAGGACTTGTGCAGTTTCTCAGCCTTAGGCTCGGTTTTGGATGGTGATCATGGAGTCATGTCTCATTCACAGGGTGGCCGTCATTTCAACCAAACAGTACAGGAGAGAGG---GGCATGGAAAGGCAGAGTAAATAAAGAGTAGCTCACTCCTCTCTCTTATTA-----CATCCTAAAACTACAAAA----------AAAAAAAAAAAAATTAGGCAATCTTAAACCATGTTGTCTTATTATTGTTGACTGTTTCCTGAAACTC-ATTTCCAATAGCAATTAGCTTGGAGCCTACAGGGATGAAGAATATTTCTTTATTAAACAACAACATTTAACCAAGAATATGAACATGGTATTTTTTAAGCTGACAGCAGTATGCTGAGTATAATTAAAGGG------ACCTTCCCTTGC a score=17770 s mm7.chr9_random 3463833 909 + 9745104 aagaatctataaaaagGTAATAA--TGAAAAGAATTAC-------TTTGCAGAAGTGAGCAACATTGCCCTTAAAAGAGCCTACAGTCTAAATTTCATTTTATAGTATTAAAAACA-TGTTG-TGAGTTCAGGATATCCCATCTAATGTGCAGTCCAATACATGGCACTATTGAAACATGAAAGACATGCAATCCATCTTGAGCATTTCAAGA--------------GATTG--------------TCCATGCCTACATTTGACTGCAGAGTTCCATTGATTCACTTTCAGAAAGAAAGTATAGAGGAAATAGCATGTTAAACTTTCATGTTGCTTTAGTTTTCCAAGCAAACATCCTATCTGCTGCTTTTCACTTATGAAGCTACACTATAAATTAAGCAGAACCAGGAAAAAACAAAACAAAAACAaaacaaacaaacaaacaaacaaaaaaagaaacCAAGCGGATGACCTGAGTTTAATTTGCTAATATCTCTGGCTTCTACCCTAGTTTCTTTGAAGATATGATTAAATATATCATCGACTATTCAGTTTTGGTTGAAAACTAA-AAGGAAACGTTCTTTTATATGGAACACAGGTGGTCTGC-TTGACTGAAG---TTCACTTACACATAAAATTAAATGGGAGTCATATAGTCATATACTGACGGGATTTCTCTACAATCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattgtgtgAACAGCAGATGTATTTT-----CTATCAGTAATGACTGGTGGCTT-----TAGACAGTCAATTCCCTTCATGGTAATATATACAATTCTTTATTCTCTGCCATCAAGGTATTCATTTTTCTCTACTGA----ATATCACCCATTTTAGAAATGTCTAGGCA-GATTTATATGTTTCACTAATTTCATTCATTCTTGAAAATAATAATTCATTAATTCCTTGAG s bosTau2.chr23 4270148 877 + 41602928 AAGAATTGATGAATGACTTATAAGTTCCAAGGAATTATGCTCTAGTCTACAGAACTGGGCGCCACTGTCCTTAAACAGGTCTATAGTATAAATTTATTTTTATGGAATTAAAAGCCCTGTTACTGAGCTCAATGCATCCTGTTTAATGTGGAGT--AGTACATGATACTAGTGAACAACAAAAGATGTATTATCCAGAATAAGGGTTTAAAAATGCCAGGGTTACATGACTGAATGTAACCCTGAATGTATGCCCACATCTGGAATCGGATTTCTAACAGTTCACTTTCATAGGGCAAAAACTGAGGCAATACTATCTTACATTTATGTCCTGCCTTATTATTCCAAAGCACTTTTCTATCTACA---TTTCATCTGTGGAGCTACTCTGT-------GGGGAAC-------------------------------------GCAGACTGAAAGAGAGATTAAATGACTTTCTAAGGTTC--TCAACTACGTTTCCTGGCTCCTGTTCTAGTTTTCTTTAGGATGAGATTAAATATATCACCAACTATTGAGCTTTGTTTGAAAAGTAATAACGAACCATTCTTTCATGAAGAACATAAATGGGCTGCTTTAACTCACATTTTTCAATCTTAAATAAAATTAAATAGAAGACATACTTTCATG-------GGAATTTCTCCAAAATCTTTA-GGAAGCTTACatatataaatatgttattatatgt-tttatatat-actatat-aaCA-CACATATATTTTAATTCCCAGCAGTCAATATAGGTGGCTTCCATATATACAATCAACCTTCCTGGTGGTGACAGATATGATTCATTATTCACTCCACAAACACTACTTTTTCTTCTCTAGGAAAATGATGCCATCCAAAGTAAAAATTTCTAGACATAATTTAAATGTTCTACTCACTTC----------------------------ATTTCTTGAG a score=15713 s mm7.chr9_random 3464852 543 + 9745104 GAGTAATACT-TGTGCACGTAAATTCTTTACACATAGTGAAATATCCAACTTCATATCAGGAATTCTTAAAGTGAACAAGGATAATAGGCAGATCAAATGCCATCGCCACACATGTGAGAAATGTAGACCTGAAAAAAGGATG--CTTCTTTTGAAATTAAATTAGATCGCTTAAAAGGACACTAGAGATCGACATTCAAAAAGAAATCTATTTTTTTTCATCTCATCTGAATTATATGCATGGGGCATTTTATGGTAATGTTAAACATTCCATATT---CCATCTTTTTTATTATTGAATATTAATTTCTACATTAACCCAACAAAATCAGAAATATGTAAAACATTATCATTGGCAATACTGTAGATTACTATAGGAACCTTCATCTTTCAGAATGATCCAAGGACAATTCTTTTGTTGGGCTCCTCCTCGAAG-GAGGGGCTGACTTTATAAAGCTGACATTGGAAAAGCCTTTATTCAGAATATCTATATACCCA-GTTAGTTTGAAGCCTGTCTTTGGCAATCTAATTAATATGTATCGATAACCA s bosTau2.chr23 4271025 542 + 41602928 GAGTAGTTCTACGTGCACATAAAGTATTTGTGCATATGGAGATAACCTATTTCATAGTCCATATTCCCCTGGAGAACTGATACAATGGCCAAATCAAATGCTTCCACTACAGAGATAAAAAGTCTGAATCAAGAAATTGCAAGATTTTCTTTTGAAATTAAATTGGGTTTTTT-AGAGAGCATCAGATGTCCACTTTCCCAAAAGAATCT-CATTTTGCCATCTCATCTGAA--ACATACAGAGTGCATTTTGCAGCAATATACAAGTCTCCACATTCTGCTGTCTGTTGT-TTTTTAGATATTAATGTCTCTTTTAACCAAACATAGTTGGAAACACATAAAGCATCATCACTG---ATTGGGTAGATATTCACAGGAACCTTCATTCTTTGGAACAATCTAAAGCTGGTTCTCTCTCTGGGTGCCTTTCTGAAATGAAGGGCTGAATCAACAAAACTGATATCTGAAAA-CTGTCTTTCAGAATATTTATGTCCCAAGGTCAATTCAAAGGCAATCTCTGACAACTTAAGAAGAATTTATTTATAGTCA a score=3338 s mm7.chr9_random 3465401 222 + 9745104 TGATGTGCTATAAAGGCAATTAAACTTCCATAGGCAATACTTCTTGATTTTTTCATTCAGAACATTAAGGAGAGTATCCACTTATTTCTATCAATCTGTAGACAATCAGTGAAAGAAACTGGCATGCCTAGTAAGCTGTTTCCCCATAGCCTTTAGCCAGAGTTCAAAAAGAAGTTTTTAAA----AGGTCTAAAAGTGTGAACTCTTCTCTATCTGTATAGTTAC s bosTau2.chr23 4272623 197 + 41602928 TGATATATGACTAAGCCATCTTAAACTCTATGAACAACACATCTTACTTTACTGACTTGTAAGGTAAAGGAAGGTATCCACCTACCTT-----ATAATTGGACAGGCAG---AAGA----------------TCGTTGTTT-CCAACAGCATTTGGTCAACTTTTCAACAGA---TATTAAAATCTAGCTCTAAAA-TGTGAACACTCCTCTGCATGTATGTATAC a score=3903 s mm7.chr9_random 3466376 278 + 9745104 AAACTATAATAAACTAGACAATGTGATCTCTAGACTTTTCACCGCGGCTGTCAAAGTATTATTTAG---TAAGGTAGAAAT-GAATTGTTAGTTA-AAACCCAGAAAGAAATTTTAACTG----GCAATATTTTAAAAATGAAACTTTTTGCTTCCTTAGTATCATTGCCAATAAAGTTTTCGGTCCCCATTCACAGCCACCTTACTGATGTCACTCCCAGCTTTATTTTGGAAACTATTAAAATTACTTTCATAATTTCTGACACACAACTTACCAAGTTGATTGA s bosTau2.chr23 4280724 235 + 41602928 AAAGTATGGAAAATTTGCCAATATAATCTATAGATTTTTCATCACTATTATCA--GTATCACTGAAGTTTAGGATAGTAATAGAAGTGTTCATTAGaaaattaaaaaaaaaaaaaaaCTGAATTGAAATACTGTATGAA---AAGTTTCCTTTTCCTCAAGGTCTTCACTAATAAAACTTTCAT-----------------------------------------------GAAACCAGTAAGATTATTTTGCTTTTTGCAAACACAAAAGCAGTCAAACTGATTGA a score=2938 s mm7.chr9_random 3466654 169 + 9745104 ATTATTC-AACTCataatttaaatttatattttt-----tGATAAAA--CTATTG------TTCATCATGCTTCTGTTATACTATCTTTTTTTTATATAACAATGACCATTTGGGAAATCAAAAAATAGATGTGTGTCGAACTTCTGGTTTCATAATACTCTTTCTTATGTGTAATTAAACTA s bosTau2.chr23 4281259 180 + 41602928 ATTGTTCTAAGTAGTTATTTAAATTTGGATTGTTATCACTGACAAAAAGCAATTACATTACTTTATATAACTTCACTTATACTGT--GTTGGTTATATAACAACAACAAAGCAG-AAATCATATCATGCATACAGCATGAGTTTTCAGCTTTATAATGCTCTTTGTTAAGTTCAGTAATACTA a score=3998 s mm7.chr9_random 3466823 220 + 9745104 TTCAGCCACCTACAGGATCTGTTTAAACTTATGAGAAGTATTTCAGATTTT-ATGAAACC----CACCAAAACATT--TGTGTGTAATGTTTATTTCTGA--TGGATGAGACAAGTTAAGATGTGTGTTCCTTTTCAGGATCACAGACATGCTTAAATATGCT----------CAGAAAATAGCAT--GCAGGGTATGGTATTTTATACTTTGTGATACATAAGTG--TTTGGAAGTTTGTTA s bosTau2.chr23 4281667 231 + 41602928 TTCAGCCATCTACAAAATCCATTTAGACTCTGAATAAAGTTTTCAGATCTTAATGAAGCCCCTTCATCAAAACACTCCCCCATGTCATATGCATTTTCTAATTGGGAAAAATCAATCAGAATG------------CATGAGCATGGGCATGGTTAAATACACTAGCACCAAAACAGATGATCTAATTGGTAAATTGTGGAGTCTCAGACCTCATGATGTATAAACAGTTTCTGACATTTGTTA a score=2991 s mm7.chr9_random 3468112 128 + 9745104 TGGCAATTGGCCCAA-GCTTCACGGGAAAGATTTATTGAAGTTATGGTTGTGACCCATGTAGTCTGGTGCTTAGTGAAGAGTTAACACATGATGTATG-TTGTCACTTGCTTTTAATAAAAATTACTTGA s bosTau2.chr23 4285803 126 + 41602928 TGGCATTTGGCCTTTTGTTCTATG---AAAATTAAGTGAGGATATGAATATAAAGCATTTCATAGAGTGCTTCGTTAAAGGTTAACACCTGATCCATGTTTATCATTTGCCTTC-TTAAGGCTAACTTGA a score=17314 s mm7.chr9_random 3468240 543 + 9745104 AGATGGGACGTTTTTAAGTTTTAAAAGTTTTACAGAAAAGCTAGCATAAA-TGATTTTATTGTTCATTGTAAAACATACTTACTGGTTTAAACATTTTTAATAAGATGAATCATTGATACTA--AAGGTAGATTACCTTAAATAGAGTTCTTAGCCACAGTCAAAATAAGTTATGGAAATTATTCAAGATCTTTT-GGTAAATAGCTTGAAAC-CTTTGGAGATATTATCCCAT-CTGCATCTTGCCAACATTTTAATTAGCCTTCAGTGCTGACCCTATTGGCTCCACCCATCCTGTTCCAGCAAGTGATGCCAACCTCCGGCTGAACCTCTGAGCAGCAACAGAGGGGAACTCGCTTCAGCAGGAGGGAAAAATGAGAACTCAGGTTC-AAAGCCTGGCTGAATAATGCCACATCTGAACACA---GGGCCAGTTACTGGCTTGCTGGAAACGGTTTATGGAAAAAATGCTAATTTAAAAGGCAAATTAAACACATTAACGATTGTGAC--TGGCAGTGACTGCTCAGAGGCAAGGGTACCTCTAAGAGCTCT s bosTau2.chr23 4286116 531 + 41602928 AGGTGGAAAGTATTT----TCTAATACTTTGAAAGACAGGATGGATTAAAATAATTCCATTTATCATTTTGAAATGGTCCTACTTTGCTTGAAATGTGCAATGAAACAACTCATTGTTGATAGCAGAGCAGATTACTTTA---------------TACAATCCAAATAATACATGGAAATTATTCAAGGTCTTTTCAGCAAGGAGCTCCAAACACTTTGGAGACATTATCCCTTTCTGGAGCCTGCCAACAATTTCCTCCACCTCCAG-GCTGACACCACCAGCTCCACCCATCCTGTTCCACTTGGCAACATCAACTTCATTTTCAACCTTTAAGAGGCAACAAAGGGGCACTCACTTCATCATGAGGG-TAAATAAGAGCTCATGTTCAAAAACCTGGCATCGTGATGCCACAAACGAGCACAACCGTCACAGCTATTTACTTG--GAAATATTTTTAAGGGAAAAATATGAACTTAAAAGGCAAATTAAATACATGAATAATTCTGATTATGGCATCACATGCTCAGAGGCAAGAGTACC-CAAAAAGCCCT a score=8656 s mm7.chr9_random 3469147 499 + 9745104 aattccacagcaagtgctttgcccacttgtctggctctccagggtaaactctatctttttaaatgcaGAGCCTCCTATGATAAGGAGAATTTC------AATGACCAGGTATTCAAAT--------------------GACACACAGCT-TGGGCACAAGGGGCTTGAACAAACCTCTACGCAACCCAGTTGTTCACTATGTCATTATTATGGGGTGAGAC-ACTTATTCTAAAGGC-ACTGTGGGTAATGTCACAGAAAAGTTTGTTGGTCTCAAAATCTATTGGAATCTTCAGAAATCACATCCCATGGAATTCTCATGTTTTAGGAGCCATGGAATACACT---AAGCAGTCAAGCAATTGAAGAAGGCTGGAGCGACTTTGAGAAAGTGACACCCATATACGTGGCCCTCTAAGCACAACACTCAA--CAGGGAGCTCATTTGCTCTGGCCTAAGGTTTTTCA-GTCAGAAACTTAGTCTTGGGTCCTCCCTCCA-TATGTGTTCTGCCTAACGCTTACCCTGTCTTAGCA s bosTau2.chr23 4286693 528 + 41602928 AACTTCATTGCAATTCTTTAG---AGTGGTTTGGGGTTACAGGA-GATCTCCATCTTTTCAA-TGTAGATCTTTTTGTGG-AATCAGAGCCTGCAGATGAATAGTTAGATATTCAAACCTCAGCATAAGGTTCAAGTAGACCCACACCCATGTGCAAAAGAGACTTCACACTGCTTTAAAGTAACTCAATTACTTATTTTGTCATTATTCTCAGAGGATGCTGATTACTCTCAATGCTACTCTAGGTAATGGAATGGAAAAGCCTTGTGACCTCAAAATCTGTCATGATTTTCAGAAACTGCATCATTTGGGACATTCAAAATATAAAGGCAATGAAATAAACTGTGAAAAATGAaaacaatggagtggggctcagacatttctggagaagttatgccagtgcagaggcccatggaggcatgaagcccaaggcaggggccccacttgctcaagtccaagAATTGTTATGTCTAAACCTAAGACTTGGTTCATTACTGCACCacctgttctcctgcaagctt-ccccatctcagta a score=12419 s mm7.chr9_random 3472491 552 + 9745104 ATTAAGGACAGACAGTAAAGGAGTTGGGTCGAAACAGTGAGACTACAAATCAGGAAGTTATAG-AATAAC--------------TTGGGAGCACAGA------CAGCTTCGGGGGC-----AAGACTCGACCCTAACA-ATACAGGTTTTAATCCTAA--AAGTAAGTCTCCCAGTTCCTAGGCTCTACCCAGCAGATGTGGATCTTAGATACCGATTTCCTCTAGAAGTCTGACTATGTAAAATGCATACAAA-GTAAGGATATTTATGAGAGGGAAAT----AGTCCCAAATGTAAGAAAAAGTAAG-----TTGTTAAATTTATTTAAAACTTACATCTCCATTAAACTCTTTTCCTACCTTCCC----------CAGAACAGTACTAAATATTTTCCTACAGGAAGCTGCCTCACACTTTATAAAGTTAGATTCGGTTGCCCTAATGATGCCAACATTTCGCTCTCTCCATTTTATTTATAAGGTTTCAAAATTGAAAACTCACTTATAGACACTAATTTATTCTAAATATCCTTATAAACGTGCCCCTCCCCCAATCTAC----CTTTAA---ATTATATTACTGCTT--AACCCACTTCCCACT s bosTau2.chr23 4291901 596 + 41602928 actcagaacaggctgaaaaaggccagcgtggacacaaggaga-gaaaaattaggaggtgacagcaataatccagatgagagatgttggcagcctggattaggacggtttgggtagagatggaagaggAGACCCTGGGGTATTGAATTCTTCACCTTGACAAAGTCAGTCT------TACTGGGCCAGGCAGGACAGGTGAGAACCTTACAC-TTGATTCTCCCTGGACATTTGACAATGTAAAATTCAGAAAAATATCAGAATATGTACAAGACAAAAATCCAGAGTCCCAAATATTAAAAAAAGGAAAGGAAATTGTTAAATGTATTAAAAATCTGCTTCTCTGTGAAACTCCTTCCTAACTTTCCCAAATATTTGGTAGAATACTACCAAATATTTTCCTATGAGAAGCTTTCTCACACTTTATAAAGGTA-ATTCAATCACTCTAATGACACTAGTATTATGTTCT----ACTTTACTCCCTAGCCCCCAAAACTGAGAGTTCACCTGCATCTACAAATCAATACCAAATAGTCTTACACAAAGATTTATTTTCC-ATTTACTAAGCTTGAAAGTACTATATGGCTGTATCAAATCCATTTCCCACT a score=8575 s mm7.chr9_random 3473265 252 + 9745104 TTCTAATTAAAATTCGTGTTGCGTTTCCATAGCACCTTGTGTACTGCTGAGGGGGCTGCTACCGGCTTTATTATACAT----TGCTTTCCAGGTGGCCTATTTCATTTTAGACTCCCCATATCTTGAACCCCAGAGGTGTCTCTAATGTTGGGAATGTAAACAGGCTGATGAGGGGTGGTCCAGGGGCCACTGCATTTAAATCGCTCTTAAATCATAGCATGTGTATTTTTTTCATTCATTCCATGTAGATCTAAA s bosTau2.chr23 4293883 250 + 41602928 ttttaaagaaaaTATATGCTGTGCTTCCTCAGTGCCCTATGC-CAGCTAATGAGTTCACAACTGGCTTTAGTATCCATGCTTTTCATTCCAGGTAGCCAATTTCACTT-AGAGATGCTCTATCTTGAACCCCAGACTTGTCTCTCAAGATGGGGCTGTGAGCAGGCTGGTGAAGGGTGGTCT-GGGGCAGCTGAATTTCCTATCTTCCTAAATCATTTCGTGGGTATGTTT---GTTCATTCCCTGTAAGCTGAAA a score=6823 s mm7.chr9_random 3473558 883 + 9745104 AGGGGCTACTTGATCAATTACGTTGACTGTACAGAGCACAGCTGGTGCCCATTGTAGA---GACTG-------------------TGCCTAATTGCTTCCACAACTTTCTGTCCT------AAGCAAGTTAGCAAGTGTACACAGAGACAAATGTTTTGCAGTTTGTGGTCAGTCTAAAGGATTCCCACCTCGGTGAGGATTTGGGAGGAACCTAGAAAAGCCAGACATGGTACAGACTCCTTAAAGAGAACATCTGTGGGGTATGAACAATAACTAAAGCATTAGGTTTAGGAGAGAGC-AGAGCTAGCTGGAGGCAGTGGGGGGGATCTAATCTTGCACTTAGAGA---AATGCCAAGAGGTTATATTACTTAGGGGTGTGTTGGGTTACC-------AACTATAGTTCCCTTTTCTATCAGAATTTATTGAACATGGG--TTACATTTAAGCTGCAAGCTGAAAGGGCAG-------TGTCTAAGAGAGGTTACTGTGT----ATCCTG-----CCG---------------------------CTTGAATATAACG-------------------------------CCCCATGCACACCTGGCTGTCCAAGGCAGA------CTATCAACCTTTACCCTTAACGCGTCTTCATTTTTT--------ATTTGACTATCAATTACATTAAATTTAATAAAGG-----CTAAAGAAGACACAGTTAATCATACTATAGGGCGATTCTAGCCCTCCAAAAGCACAGAGATCCCACAGAGTCACAAGGTCAAGGT----------ATCTACATACAATCCATGCATGTG---ATTATGAGCAAGAACAGTCC--------TAAAACTGCCCATTCAACAACCCTT-CATCCCAGCACGTGGATGC----CCTAGAGACAGAGACCCAGGTAACCTCTGTGTTTCCATATGTCTACATTTCCAGAGGAATGTTACACGCAGGGTAAACTGTAG------------GAGAACCTGAAACAAGAGACTTGTTTCTAGCTCTGCCTTCCTCCAGACTTG s bosTau2.chr23 4297288 1001 + 41602928 AGGGTAAACTCAATAAATTATGTTGCCTGAatagagcacagctggtctccatactatatttgacagaacttcatatccttaagactgcttaattcattccacaaccttctattctcaagttgagcaaGGGAGGAACAGGATTCTTAGATAAAAGTGTAACCTGTTGGAGTCAGTCTAAAACACCCGTGCCTCACTCAGGATTTGGCTGGCCCCCATATAAA--------GACACagggaactt--agaaaaggtctgcaaag--tgatctgcaa----------agcttacagaaagagtgagagagggttgaaagcact-gggaatatttagctttgagtttagaaactgatgggcaatgttctaacttgcttcttactttgtagggtgaccctacaaagactagtgtctcttttgct------ttttatttaacacaggaattaacttgaaacagtaggttgaatatgaagatgagattttctgaaagtgagagctgtgtttagatactgggacactgattgcTACATAAATGCATTAACACTGTCTTAAAAAtaaggtggcagtacatcccttttggtttgaggtcgtcctgatacagacctga-tatctgagggaaattaattttatcccctcttactc-taatgtgcc--cggttttgaccatacaatgtgatcatc--TCACTTCAATTTCCCTGTAAGTTTACCTTGAAGAAATATAGACAGTTACACTCCACATCCCCCCTCGCTCTAC-AGAGTACACAGCTTTAACAGTG----AAGATCAGGGTTCCCGTCTCCCCCTGCATATAATTC--TCATGTGACCATGATGACCAAGAACAATTACAAGTAAGTAAATCCATCCCTCCCAGAACCCCTATATCCCAATGCATGGACCCCACTCCCTGAGACTAAGCCTTTTACAGTCACTGTGTTACTATAGA---ACATTTCTCTGGAAATG--------AGAATAATCTAGAGACAGTGGGGGGCGAGGGGAGGGGGGAAGAGCCCTGTTCTCAACTTTGCA-TCCTCCAGATCTG a score=3370 s mm7.chr9_random 3475963 248 + 9745104 AATTAGGAGGGACCTAGTGAAGAGCAGGAACATAAGGAG---GAGCCTGGGTCCCAGAATGGCCATATCTTCCACATTAGATTTGAACAGTAAATCATCTCTGGTTATTAGGATGCAGGCTTGGGTGTCACACCAAGTTAGATAGCATGGTTAATGAGATGTGA-----------GAATCAGAAGTACAGTGACTAAGCATTATATTTTCAAAATCTTAA-------AGATTAAAGGCCTCTCTAAGTGGCTGCTCAGAGTGATGCCTA s bosTau2.scaffold9749 312 258 - 26650 aaatGGCAATGACCTAGAGCAGGGTGAGACCACAGGAAGAAAGACTTTGGGTCACTGAATGGCCAAATTATCCACTCAGGACTTGTG------ATGATTTTGAGGCAGGGAAATGTGGAGTTGTGCATTACAGTG-TTTCTGCATCCTGGCTCATGAAACGCAATTCTTAGATTTGAACCTTGAGTA--GAGACGGAGCCTTGTGTTTGCCAAGTCTCCATACACCGAGATTAAAGGACTTG--AAGTGATTTCTAGGAAGGATGACTG a score=51662 s mm7.chr9_random 3476236 1762 + 9745104 GACAAATATTTGTTTAAAATTTCTCCTTT------------TTCTAAGATGCTACAATGCCTGGCATCAAGGACCAAACCATAC-TCAAGGGCTAAGTTGATTTTGCTTTTAAAGTTAAATGTAACCTTTTGGGGGA------AAATAGTTATTATCTCTTCTTCTAATTTAAAGAGAA----------------ATGTATCCCTTTATTCACTAATTAGCTCGTTTGTCCTCTTA------------------------------------------------------------------------CAAATGAGACAGGACAGGACTATTCACAAG------------------AGAAATGTTTGCTTGAAGTAATTCAAAGCAACACTGCCTGC-TGCATCATGAACAAGTTAGTACCAAGCTACTGCTAAACCAAAACCACTCACTTGATCAAAGCTTTGGATCTCTGTTTTCAAAGCCTGAAGCTTT----GTTAGGGTTTTAAAGCAGGGGCAATATAATTGGAG-AAGACTATAAAGCTTTA-CAGGGGGATGTCTTTCCAGTTCTGA-ATACAGCCTCCAGTGGCCCTGAATAACTAGACATCATCACTGCTCTTTGCTTTTCTAAAATACCGACT--CCCAGTGCGTCGTGTGTCATGTGAGTCT-ATGTTCCGTTTCAAGTGATACCTACAAGCTGTTCTGAAAAGCATCCAACTCC--CATCTTATAAACTCCACTGTGATCTACAGTTCACTCTA---AGTCTTTGCCACAACACCCCCCCACACTCCATATTATATACACAC-CATCAGTGCT--TCCTTCCCACCCTCACATCCTAACACCTTCATTTAATCACCTCTTAATCATTTGCCTGAAAACTAAACCCGC-AGTCGCTTATTGTTTCCTTCCAGATGCTGCTGTGGAATGGCTCCCGGTAGACCTCACCTAGAATTCCAGCCATGCTCATTTGGCTGTGCAGACTCTGATCCCAGCGCCCCGAAGCTTTTAAGCACTTTCCTTCCAAGAAACCTCATAGCTAACACCATTACTTCCTCAC-AAAACATCGAACATCTGCAGACTGAAGCATCAAAACA---GCCAAGAGATTTTGCACAGTTCTTCTAAGCTTGGATGAAGACTTTATCAGCCATCCTAGGCTATAAATCAACATTCTTC---TCAGTTTCTAGTG---AATAAACCGTAGTGGC-AAATTTCAACTTCCTCTCAAAGGAATAATTAACAAACATGTACTTCTTGCAATTACTAATTAGTTTTTATGTCTCCCAGCTATGTGAACTAAACTTCCTTTTGGAAAACCAAAGTCTTACATA--CCATCAGTTTCCTCTAAA---GTTCAAGTTTATTCTTTTTATATACAGTTGATTTAA-----------TTGA---AGAAATCAACTAAAATATTCTACTCAACTGCTTGTT-TAGGCACATACTTTGTAAAGTTTACCAAAATTATTTGTTCC---------------------------------------------TAGAAGACAT--------------------------------------------------------------CGATAGAAACAAC---------------------------------------------------------------AAAAAATATAAGTAA----------------------------------------------------------------TCTATAGTATCTTGCAAAAATTAA--TTATGACTATGGACTTATTTATCCTACAATCTCAGTAAGTGAAGACTCTTTTTAAGGAATAGGAGAATAAGACCGC---ATCAAACCTGGA--------CCTCTACGTACCCAGCTGTTTCCTGTGTAGATCATAATGGTTTTTAGTCATGGGCTT---------------TTCAGATTGGAgttcttaacac-tgaacatgcatccaaatctcctgcagagtttgctaacccagcttcccagcgtcagttccagagaagatgattccttaggccaggctgtgtccgtgaattgtaatttctaattagttcaccaa----ggcgatgccaacattgatcagagtaccacaaattgagaagcaGAGTTGTAGCTAAAGCCAACtttataaaaaaataaataaat s bosTau2.scaffold9749 588 2181 - 26650 GCCGGGCACTCGTTTCTAAACCCTGCCTTGTCTTTCTAACTTTCCCAGAAACTCGAATATCTAGCATCAAGAAGAAAAACTTGCATTCAGAGGAAACCTGATTTTGTTTTTAAGGATAAACCTGAGTCTCTGGGGGAGACATAAACTAGCTTTCATCC--TCTATCATCTATCAGAGAATttcatgcattcattcattcatccctttattccctaatccattcactcatccttttatcctctaattcattcactctttcctttattcactcatttattcatctctttattcactaactcatttattTGCAGCTAGGA--GTAGGGAACTATGAGTAGGCAAGAGGCATGAGCAGGAAGATGTGACTGCATAAAATAATTTAAAGAAATGCTGTCTTTACACATTATGAACCAATCAGCATCAA---ACTGCTCAAGTTAAACCCTTCATTTGATCAAGGCCTTGGATCTCCATTTCCCAAACTCAGAGCTTTCTTAGTTAGGACTTTAAAGCAGGGCCAATATAATCAGAGTAAGACTGAAAAGGTGTAATAGCAGAATGCCTTTCCAACTCTAAGACATGAATTCCAGTGGCTCGAAATAACAAGACATCATCACTGTCCATTACTGTTCCAAAAAAACAAGTGATTATGTGAATC-TGTGTTATGTGAATCTCATCTTCTGTATCATGTGATACCTCTAAGCTGTTCTGTCCAAATTCCAATTCCAGCTTTTTCTAAATTCTGCTGTGATCTATAGTTCATTCTATTAAGTCTTTTCCATAAT--CCCTCTATAC--CATGTTATACACACACACACCTTCCCTACTCCTTCCCTCACTCAAATCCAAAAACCTTCACTTAATCACCTCTTAATCATTTGCCTGAAAAGTAAGCCCTCCAGCCTCTTATTGTTTCCTTCCAGATGCTGCTGGGGAATGACTCCCCACAGACCTCACCGAACATTCCA-TCATGGTCAATTGGCTGGGCAGACTGTAAGTCCAGTCCTCCAAAGCTTTTACGCTCTTTCTTTCCAAGAAAACTCAGAGCTAACACCATTGTTTCCTCACAAAAACAGCTAACATCTGCAGACTGGAACATCAAAACAAAGGGAAAAAAATTGTGCAGGGTTCTGCTGATGTTGGATGCAAACTTTCTCAGCCATTTTAGGCAATAAATCAATGTTCTTCTTTTCAATTTCTATTGAAAAATAAACCATACTGGCTGATTTTCAGTTTCTCCTCAGAGGAATAGTTAACAAACAGGT--TACATGCAATGACTAATTAGTCCTTCTGCCTTCCAGCTAAGCAAACTCAGCTTGTATTTGGAAATGGAATCTCTAACAAAATTCATCACATTGCTCAAAGAATGTTCAATTTTATTCTGCATTTAAATAGTTTGTTTCAGCTTTATTACTTTAATCTATAGATACATTGGTATAGCTCAACAAACTGCTTATTCCAAACTAATAATGTACAATGTTTATTAAAGTTATTAACTCCAggactttcctggtggtccagttgttaagacttcgtcttccaatgcataagacatgggttcaatccctggttggggagctaagatttcacatgcctcatggccaaaaCACCAAAACACAACAGAAGCAATATTGTAACAAATTCAATTAAGTCTTTAAAAATGGTCCACATCaaaaaaaaaaaaaaaatcttaaaaaaataaaattaaaaaaaaatcttaaaaaagaaTTATTAACATCCCAAACTTTGCATTGACAAATTTGAATATAATTACCATATTATCTTATAAAAATCACTTTTAAAACTTTGATCTTAGTTGTTCTACAATCTCGGTTAATGTATGTTCCAGTTTAGAAATAAGAAAATATTGCCCCTCTAGTAAAGATGGAGCCAAATCCCTCTTATT--CCAGCTGTTTCCTGTATGGATCATAATGGCGTTTAGTCATTTCTTTATTTTAGACAACTCCTTTAGATcggtgtttctcagactttaatgtgcctacaaa-ccccagtagagcttgttaa--cagtttctcgggcccatctccagagactatgattcattgggtcaggttgggtcaatgaatttgcatttctaaccagctcacaaatgatggtgatgc---tgctgatccaaggactaaaatttgagaacttctgCTGTATCTTAAGCTAACTTT-TAAAAAACTGTATGAAT a score=4650 s mm7.chr9_random 3478955 309 + 9745104 TAAAAAACAAGCTCATATTGACATGAA-TAAATAAGCAATAAATGACTAACGGTGCAAAAAATAAACCAACTAAAGTATATAGACTCTTGACTAGTAGTCAGGATTTT--TTACTGATAACTAATAATTTGTAAATTACCTACA--------ATAGTTTTTA-CATGTGCTGTTAAAGCACAAATGCAAAATAGAAAAGATATACTTTATCAACCCAATAATAACGTCCCCTGCCACAGCTGT-------------AAAATGTGTCAGACT-TGCTTTGGTTTTCTGA-CTTTCAAGCACTGTAATTTGAACAACACACAGAAACTGCACATTTTA s bosTau2.scaffold9749 6874 332 - 26650 TGATAAGTACACATATATTTACAAGAAGTTCATGAGCCATAAATGTTTGGACTCACAAAAACTGGAGCAACTAAAATTTATCAAAATTTGAAAAGTATTCAAATTTTTCACTACTAATAATTAATAAATTATAGTGTTCTAAGAAAGTATTGATAGTTTTTAGCAAGAACTTTTAAGCCAAATGGACAAAAT----AAAACACACCCTATAAACCAAATATCCTTATGATTGGCCTCGGGAGTAATACAAATAGCAAAACTGTACAAGAATATGTTCCATTTTTCTGATTTTTCAATTCCTGTGAATTTTATGGTACATGAGATTCATATGTTTTA a score=50039 s mm7.chr9_random 3481660 1168 + 9745104 TATAATTACAAAAACTCATGTTACTAATTTC----TAATATTTAATATATCTACCATTTTATC--------ACATATACTCTTTGATCTGTTCCATGTAATAAATCAGCTGCAAACCCACAGAGAGCATGCTGAGATA-TACTACT-CCCATATATAATACATTTTGAT---TAAGACAATTGACATTCAATTCAATAAATCATCACTATATCTTTCCCATTAAAAGGTCAACAGCTGTATAAATACTTCAAAGAGCAAGCAGACTC----------GTTCTTCACAGATGAGTATTTATGCAAGCTTCACGTTCCATCTTCTTTAGGTTAAGTTTTCCTTCCA-TATTTGCTACAGCATACATTCAGCAGaattatattaaattaaatattaaaatCATGCCGTAAGGGAATGAGGGCTAAGTGATAGCAGACATTCGTGAGTGAAGTCCTGAAGAAGTACATCTGTTTCTCCACAGGCCTTGGAAATGCCGTTTAAACACAACCTTAAAGCTTAGGCAAACGGAGCGCCAAATTACCTTGTACTATAATGTCTGAGCGAGCCCGCCGCTTTCTGGACAATGTTAAGGTTAGAGCCATTCCGTATCATTTTAAAAGTCAGAGAAATCTTGGCCCCTAAATCAAAACTCTCAAAGAGTAGAAATTGTGTCTAATGAAAGTAAGATTCCTATTTTGACTTCAGCATTAACCTATGATCAGCTTCCATTTCACAGTGAAATGAATACAGATTGAGTGAAGAATTTTAAAAGCGAATGCCAGACTCTGTACACCCAGTGGGTTACAGATGGAGAAACGCGGTGGCAGAGAGCCACTCTACTCCCTTTAAAGTCCAAAAAAGCATTTGGAAGGAAACCCCAGAAGGAAAGACGTCTGACAGACAAA-TTCTCTGGGGTTTCCAGCGGCCTTGTTTGCCAAGCTTCCTAGACCCCATTGCTTGTTAATAAAGTTCAACAAAAAGACTTTATG-AATACCGATTTCTCAGAGTAAAGCATGCATTAAAGAACTTTATAATGCACTTGAAGTTTCCTGCCATCTGTCCTTCCCTACTTCACAAATCC----AAACATGACTTTGAAAATCACAACCACGAGGTGCCATTTGCTGTGTGTACTATCAATGGGGTACTGAGCCCAAATGCTGACTCCCAATCTGCAGACCGGAGCTTAGCCTCAGCAATAG s bosTau2.scaffold9749 10129 1180 - 26650 tATAAATTTCTAAACTCCTGTTAATAATATTCTATTAACAGTTAATATATCTCTGATGTATTCTTAAATTTAAATATATTCTTAAATTTGCCCTATGCAATAAGCTAGTTGCAAATTTAGTGCAGGTAAGCTGAAATAATACTCCTGCCCCTAAATAACACTTTAAAAAAAATCAAATGATTGACATTCTATCTAACAAGTTATCATTATGGCATTTCCATCGAGAGGTCTATA--TGTATACATGCTTTCAAGACCAAATAGATTTAAGAGATCCAGCTCTCCAGAGATGAGTGTTTATGCAAGCTTC-TGTTCTATTTCCTTTAACTCAAGTTTTCCTTTCAGTATTTTCTAGAGTATACATTCAGCAGaattatattaaat-----attaaaatCTTTTCACACGGGAATGGAAACTAAGTGATATCAAACATTCGTGAGTGAACCTCTGAATCACTTCATCTGTTTCTCCATGGGTCCTGCATATGCCTTTTAAAACCAGCCCTAAAACCTGGGCAAAGAGAATTCCAAATTGCCCTCAGCTTTTATCTGTGACTGGGTCCACAGCTCCATGTAGAAT-CCAAGGCTTGAAATGTGGCATAGCACTT-AAAATTCAGAGAAGGCTTAGCCCTTAAATAAAAATTCTCAAAAAGTACAAATTGTGTCTAACTAAAATAAGGTTCATATTTTGACTCCAACATTCAGCTATAATTCGTTTCTATTTCACATTGAAAC----ACAGATCAAGGAAAGAATTTAAAAAGTGGATGCCAGACTCTGCACACCCAGTGGGTTACAGATGTACAAACACAGTGACAGAGAGACCCTCTACTTCCTTCAGGATCC--AAAATCACTTGGAAGGAAACCTCAGGAGGAAAGATGTCTGACAGATACATTTCTCTGGGGCTTCCTGCCTCCTTGCTTGCCAAGCTTCCCAGACTCCATCGGTTGTTCATAAAGTTCACTGAAAAGACTTTCTGAAAGGCTGATTTTACAGGGTGAAAC--GTATTAAAGGTGATTTTTCTGTAGCTGAAGTTTCCCTTCACGCACACTTCCCTACTTCACAAATCCAAGGAAACATAACTTGGAAAGTAACAAGCGTAAGGAGACATTTGATGCTT----TATCAGTGGGATACTCAGCACCACCACTGAATCCAAAACCCGGGCCCACAGCTCACACATTGCAACAG a score=32927 s mm7.chr9_random 3486809 1145 + 9745104 GCCAAGGACAGTTAGAAGA---CAAATGTGTATAAAGGCATTCTTTTATACCTACATGTTTAAGTGTAGT-GCAATCAAATAGAATATTTCCAGGGATAAAATTTTCTCAGCAAGGCAGCTGTAAAGGACTATTTGCCTCTCCTACATAGATTAACAATTGCCAGACTACTAGAAGGAAACCAGAATTCTAAAAGCTGCTTTTGTTCTTAGGATTTTAACCAGGCTGGCCAAAAACTTTCAAATTTGGAATCCAGTTAAAATGAT-----CCAAATAGGCGATTTGATTTTGCCTCTCAAAAA-ACCACAGGTCACCTGCAAGTGACCCATGACGTTTCTGTGCCTGTGAAGTCTGGCCTCCTGGTTGAGTAGAAAAGAAAAAAATAAAAAGAAATAAAACTAAAAGGGAAGTGTGTACCATGGAGA----AAGAGAAGAAAGGGTCAGAGAAAGTTACAACACAGAGTGAATAACCATAAAG----CCAGAAAACTTGGAGGAGCTTGAAGCTGAGAAAAAAAAAAAAAAATCACAGCATAGGGGGAAGGAAGGATGTAAAAGCCAGCTGGAATCAGAGAGAGCAAGGAATCCAGGAGCCAACAGAAATCCAAGGACAGAAAGTATTGAAGATTGAAGGGAACAGGAAATTTATTGGAAACTCAGTTGTTTTTCCTTTTTTATGCAATGCAGTTCTATTCCAGACTGAATTCTACTCTCAACCTCAGGGAGGGCAGAAAGGAAGTCAAAATTCACAGTAGTCTTTCCCCAGCCTGCACTCTCTCATGAGCAGGAGCCAAGAGCTCAGGAAGAACACAGGAAAGGAACCTTGA----------------TAGGAGCACAGTTGGTAGCTGGTGGCTGCAGCAGCAGCAGCCAGCACAGAGCTTACCAAGATGGGGTGAAGGGAAAACAAAGACAGCTG--GGAGCCAACCGCAAGGGCTGCTG--AGTCAGAGCTTCCAGAAGACTCAATAAACTCTTCAAGTGAGTCCTCTCATGGCTATAGT--GGAAACAC------GCCTGCAAACTGAATGTtctggaggtagaacttcctgcgttcccaacctaactctgctct----tcactagctgctggctatgagcaacttatttaaccattgtgtgccA-TGCCTTTGAAATCTACAAAACAGACTAGTGAGATGATTAAATAAG s bosTau2.scaffold9749 11986 1112 - 26650 GCTAAGGATATGAGGAAGAATGCAAATCCTGTTTAAGGCATTCATCTGTTTTTATCT-TTTAAGTGTAGTCTTGACAAAATAAAACATTTCCAGAGGTTAATATGGCTCATCTGTGTAGCAGTCAA------TTTGAATCTTCTACTCAGTCTAACAATCGTGAGACCA------GGAAAGCATGCTCATGCA--TTGATTttactgtggggtcttcaagcaggctggacaatcactttcaaatcagaatttctgctaaaatgatattctctacatatatgaatttgCTTGGTCTCTTTTAAATACCATCTGCTCCATAAGCATAACACATCAAATT-ATATGTCTACACAGTCTAGCCCCTTGGTTGATGAGGGAA------AATCAAAAGAAATAAAAATAAAAGCTAAGCTTAGAGGAGGAAAATGAGGAAAGGAGAGAGGGTCAGGGAAAGTTGCAGCCCAGAGTGAATAAGCAGAAAGGAAGCCAGAAGACTTGGAGAAGCTCAGAGCTAATGAAAAAAACAAGAA--CACTGGGTTGGGGGAGGGAAGGATGAGAAAGCCAGCTGGAAGGAGAGAAAGCAAGGAAGAGGGAAGCCAACAGAAATCCAAAGGCAGAAAGTACTGGAGAAGGAAGGGAACAGGAAATTTATTGGAAACCAAGTTGTTTTTCCTTTTGTATCCAATGCAATTCTATTCCAGGCAGAACTCTATTCTCACCCTCAGAGAGGCGAAAAGGGAAGTCAAAACTCATAGGAGTC---------------------CACGGGCTGGAGCCAGGAGCTCTCCAAAGACAGACTGGAGGAAACACGAGCCAACAGCAGACCCTCTAAAGCAGAGTCTGGGACAAAGGA--GGAGCAGCATCACCCAGCCCAGCATTTCTC--------------------CAAAGACAGCTGAAGCAAAGAACAGCGATAGCTGCTACTGATCAGAATTCCTAGCACATTTAATAAACACCTCCGTCGACTCCTCTCACCAGCAAGGTCAGGAAACACTGGTAGATgtgaaaaccaggggctctggaaccttagctgcctgaattcac------------ctctgagatcatcaactattgatcatgagcaagtcattcaacc--tgtgtctcagttactgtg---tctacaaaaaggattgttgtgaggattaagtgag a score=2707 s mm7.chr9_random 3491822 249 + 9745104 CTAGACAAATAGAAATAGTCTCAGTGGATGTGATTGACAGTCAAAAAGAGTGTGAA----AGATACTTTACTGTT---GGACAAGAAAAAAAACAAATGGCTAATATTGTGTGTTAAGTGCT-----TTCCCTTGTAACTGCTGAGAAATTCACATTTTGCA-----GCGCTGTTATGtatttaaattatttattt-----acttttttactaaaattatttatGTGGTGTGTTCATATTAATATTCACGTGTAGCTATTGCATTAATATA s bosTau2.scaffold9749 21086 252 - 26650 ctagacaaatc---atagtcatactg-------ttggaaaccaaagataacgagaaCTGAAGATAGGTTATCATCAAAGGTCCAAAAATAAGGCCAACAGCTGAT-TTCTCTCTTATTTGTCCCTGGTTTCCATTTATCTATTGAGAAATCTGCATTTTGTATGGTTGCCATGTCATGTATCCGAAGTCTTTATATGGAACATATATTTAAAGTCAATATCCATTATATTTATGCAT-TTTGTATGCATGTATA-------Cataaatgta a score=7301 s mm7.chr9_random 3492531 332 + 9745104 ACCAGTAGATTTTCAATGAAGAGGAGACTGAAGTGCATACACTTCCGGGTGGAAGAAAAGAAGTCTCCACCACAAGACTGGAAATGAATAAATCAGTGGCGGATGAGGGAAAGGGAG-----CAAATATGCATAAATATGCATTGACTGTGAGTAAATATATTTTATAACTATCCCATGTGGAGAA-AAATGCATACAACCACAAGTACCAAAAGACAAAGGACAGCAGTAAAGTGTTGCAGCTTCACTTTTAATAAGTTATAACACCAATCATATTTATATTTTAGCAAGTCAAGGTTAGATGTTGACA-----TAGTTAACAACTGGGAACATAATACAAA s bosTau2.scaffold9749 21367 312 - 26650 accaccagatttttattaaagaaaatattaaag--caaacactttagggtgaaggggaataattccagatgaaggga-tggatctttagaaagtaatgaagagcaaggaaatgggaaatacacacataaatataaatgtacattgactgta--taaGTATATATTACAAATATAGCATGTAGAGGATGAATACATACAAT-----------------ATATGAAGGCACTAACAGG----AGTTACATTTTTAATA-----TAGAACTAATTTATATGATATTTTAATAAGTCAAGTTTGTATGTTGACACCTTCTAGGTAACAACTAACAGTACTGTAGAAA a score=5399 s mm7.chr9_random 3492863 280 + 9745104 CAGAATATAATTGACATGTTAATTCAGTGGGGAAATTAAAAATACAAAC----------Caaaaaaa----aaaaaaaaaaaaaaaaaGGAAGGAAAGGGAACAAGTTAACA----AGTAACACACAAAATAAATA-----AAAAGCAGTGAGGGTGTTTCTTTTTCTAAAAATTCATCTCCAGTCCTCTCAAGTTCCTTAGGAAGCATTCTAAAGCTA--CACGGTCACCAATAAAATGTATAA-AACTTGCATTACCCTTTCACTAAGTTTAAGCAAAAATAGCATATATAGAGTTTAAAATCA s bosTau2.scaffold9749 22592 292 - 26650 CAGTATATAACCACCAAGCTAATGCAGGGGAAAAATGAATTTTAAAAATTATGTAATTTCAAAGAAGTCATAAAACAAGTAAAAAGGGTGATGTAAAGGGCCAAAG--AACACCTGAGTCAAACAGAAAACAAGCAGTGGGATAGGCTGGTAGTTTGTTTTCTTTT-TGACAATTCCTCCCCACTGACCCTAAGGTGTTTA--------TTAACAGCTGAGCACTGTTAACCATAAAGTATATAGTCACTT---TAATCTTTTCACTAAATTTAAACAAAAATATTATATATTCAGGTTAAACTCA a score=11592 s mm7.chr9_random 3496704 521 + 9745104 CCCTTCCAAGAACACGCACAGACATGATCACT--CCTGTTGGCGACCTGCAAAAGGCCTGGGGTAGGGAAACTGCTAGGCCAGC---AAGGATGCGCCTGCTG-TTCACAGCTGAGAAGATGAGAGGCTTTTC--AGCCACAGACCCACACACTGACAATAGAACGGGCCTCAGGCAGGACCCTGGCTTACAGAGGTGACACAGACAAAAGGGATGACGGGAGGTGGATGGGGGTAGGGACGCCCTAGGCC-CAAGGTGGTACCTGCGCCGCATCCAGCGCCCCTGCCACTGAGTCTCCGCTCCAGAGATGTTCGCGGAGAAGCTGCTGGTAGTTGAGGCAGTGCTTCGCAGCAGATGGTAGATTCCCCATAGCAGCAGCCTAGGTGCCGTGGGCGGTGCTGGATCCCACGGCCGGAGCCGAGAGCCGGG------------------------TGAGAGCCG-GGAGCGCGTCCCGCGGGTGCCCGGGGTCCGAGC--------TGCACTGCGGCGGCGCGGTTCCTGGGCAACGCCCAGGCAGGGGTGTAGCGGGCACCTG s bosTau2.chr23 1060966 512 + 41602928 CTTTCCCAGGGAAACGCAGAGA-AGGAACACTTTCCTTCAGACCACCTGCACGTGGCC-AAGGTAGGGAATTCAAAGGGCCTCCCCGAGGGGCGGGTCCGCAAATTCACCCGGGAGAGGGTGGGAACCCTTTTCAGGGGAGAGGCCTTCACACCG----CAGAACCG-CTGCAGGAgggccccgggc-----ggggaggcgccg----------cggcgggAGA--------GGTGGGGACGCCCCGGGCCGCGAGATGGTACCTGCGCGGGCTCGAGCGCCCCTGCCACTGAATCCCCGATCCAGAGATGCTCGCGCAGCAGCTGCTGGTAGCTGAGGCAGTGCTTCACCGCGCAGGGCACGTTCCCCATGGCGG-GGCCCGGGCAGCGCGGGGAGAGCGGAGGGAGCAGGCAGGGGGCGAGCGATGGGGCCAACGCCCAGGGATGCTCAGCTTGCGGGCGGCGGAGCGCCTCCCGC---CTCCCGCCTCCCGCGCGCGCTCTGCGCACTGCGGCGGCG-----------------CCGGGCAGGACGCCGACGGGCACCTG a score=5772 s mm7.chr9_random 3498057 298 + 9745104 GATAGCCTTGGAATCAGATAACCCCTGCTTCATTCGGCCTACTTCATAAGCACACTTAGATTGCAACACTCTAATGCTCTTCAGCGTGGAGTCCATAGCTTGCAGCTGATAGCACACAATCGTCAGGAACAGTCTTGTGCAG----------------GGAGAGCTAGCTGGCCCTACTGTTT-CCACAGCTAGGAGGAATCAAGAGCGCCCAGGTGCACAAGCTTGCACAAAGGATGGCGTATATATACAACGACTAACTTCTGAGACATAATATGAACAGATTTTGAAGGGATTCACCACCCAGATTGGATAA s bosTau2.chr23 1065038 274 + 41602928 GATGGTCCTAGAA-CAGACCACCTCTCTTCCTACCA--CTCTTTCACAAGCACAAATACACCGACACACTCTAAAACTCTTCAGCAT-GAGTTCAGCACCTGCATTTG--AATGGACAGCCATCAAGAATAGCCTCGTGTGGCCACGTGGCCTGGCCAGGAGCACCAGTCAGCCCCACTGTCTGCTGCAGCAA---------------GCACTGTTACACATG-------AAAGGATT-----------CAACGACTACTTTGCACAACATAGTATAAACACACTT--AAGGAATTTAACACCCAGAATAAGCAA a score=5840 s mm7.chr9_random 3500435 406 + 9745104 GTACAGATTAAATAACCTGAGCACAGAGAATGTA---GGCCACT--GCAGCACA-AACTGGTTATTAAGGAGGACAGAATTCAA-CTTCAGCAGTTGGATGTCAGACATTGTCTTTGTGGTGGTGAT-------GCTGCCTTGCTGAAATCACAC--------------TCACCCAAATATAT-GATC-TTTGAAGCATAACTTCTTTCCCATTATCTCAAACATTTAAACATTACATGATA--CTTATTACAAATGCCATATCTCTTAATATAAGGTAGCTGACTCCCTCCCC-ACTCCACA-AGTTGTTTAAATTGTATCAGAAACCAGAGTGCCTAGGCGGAGATTT-AAATCTCAGGT---GGAAATAGAATCCTGGGATAACATT-TGACAAATGTACATT-----CTATTAGCGAAAGCTGCT-GTGCATCTCCTTATTCTGTAA s bosTau2.chr23 1076142 442 + 41602928 gttcagatgaggcagcttgagcacagagaagttactaagtcacttagcatcacgtggctggtgagtcagacagctgggattcaagccatggtacttgg-cgtc------tgtatttttaaTTGTCAGCCCTACAGCTGTTTTGCTGAAATCACACAAGCAAGAATGAACTCCATCAAAGACATAGATCATTTTGAGTTTAAATTCTTCTCCATGATGGCCAACATTTAAACGCTGGAAAATAGACTTCCTGCAAATTCAAAATCTTTCCAGATAGATAGGTTCCCTTATTCTCTTATTTCACAGAGCTTGTGAAATTCTATCAAAGATAAGATTTTCCAGGCAGAGATTTTCCAGCTCAGGGAAAGCAATGAGATTCCTGGGCTCAAATCCTGACGAAACCATGGTTATGACTATCAT--AAGGCTGCTTACATGTTTTATTATTTTATAG a score=5169 s mm7.chr9_random 3501045 247 + 9745104 TGCAGTACCCAGCACTCAGTCATCATT-----------------------ACTGT---------CCAGCAAAAATTCAGCTTCTTTCCCCACCTCTCTATCTTAGCTACATATGG-AGTCTTCATATTTCTGCAAATAATAAAAATACCCAAATAGCATCA---ACAAAGGTTTTGACCCTGTTTGGATTGCTATACCTTTAGAAAAATGTGATTTTTTCCCCCTTCTGATCTAAAATCTTGTTTTAAGTAGTTCCAGGCTGACGACAGAATGTTATAAAAAA s bosTau2.chr23 1076937 264 + 41602928 TATGTCCCTTAACATTCAAATATCATTTTTATCTTACATATAGTATTTGTACTGTGAATAACAGCCAGCAAAAATTAAATTTCTTTGTCCACCTCTGCATCT-----GTGTGTGGCAGACATGCTATTTTCTCACAAAATAAAAACTATCATACAACATAATTCACAAAGATTTTGCCTTTGT--------AAATATCTTCATAAAA-TGTACTTT-----CTCTCTTGCTCTAAAAGCTTCTTTTAATTTGTTCCAGGCTGGCTATAAATTGTCTAAAAGAA a score=2530 s mm7.chr9_random 3501427 146 + 9745104 AAATGCACAGAATATTTTATTTACTTTCAAGATTCTAAGGAAGTAGAGGAGAAAAGTAACAATTATAGTAATCTCTACGTAACTCATAATTATCCGATGATTTCCATATACTATGCATTAGCATAAAACTTTTCCATGTGCTAATT s bosTau2.chr23 1077487 130 + 41602928 AAATACACGCTGTGTATTATGGCCTTTCAAGCTTCTAGAAAAGT---TGATTGAAGTAATAATAATGG-----CCTAT---acttatatttat----tgattatc-tgtgtcatgcactatcttagcagttcttcaaaggctcatt a score=48731 s mm7.chr9_random 3509219 1746 + 9745104 ACTATACACACACTTTAAACAAAAACATTTTCTTTCATGTAAGATACCAAAAGTTACTTTCAAATTAGTTCATGAAGTTTATATCCTTAAAGATTCAATTTTGTGTTAAACTGTTACTTGCCTACttaaatattttatatttaaaaCATCTGTGCCAATTGTATTTACTACATAGACATTGAAAATCAATGAAGAAAACTTtatatatacatatatatacacacatatatatCCTATAATTAAAACCAGTTGCTAACTTATCAACATGCACaaat-tttaaattaaatattaccatttaaatgaaaaatatattaaaatGGCATGTTGTGCATAAAAAAATAAATTGTTATATACAAAACTCAAAGATTCCTGTGCTCAGAGAGCAAATGTGCACATCATTTGCTTCACCACATTTTGTTTGGATTTCATTTCAAGGTTGAGTTGCAGTATTTAAACATTATGAATA---------------ATGTAAAATCTTCCTTGGAACCTATGACATGGAAGTGAAAATATTGTGATTTGGGTTTTCTATTGCACATACCATATCAACAAACTTAATAAGATACTAATAAAGAAAC--TGCAAAACCTTTGATATCATATATACTTTTATAA-----------------------------------TTCAC-----------TAAAGTCATATTATA-ACAAAGAATTTAGATATGATTCACAACTACAGTCTATCTATGAAGACATAACTTCTCCCATAACAAAACTGTTC-AATGTAAAAATTAATCCCAGATTTCCAGAGATGTGATTGAAAAAAATACAGAGGTTGACAGGAAGAAATTGAAA-ACTAAATATATGAATAAGTTGTAAAAGGGAAGGGTTGTAAAGGCTCAGGGCTTATGGCCCAGAAAATTACTTGTCTAGGTTCTACATGAAATGAAAAACTAAAACAAAACCCCAAACCTACTCTTTTACCTTTACTAGTGAAAGTGATAGAAAGGAAATACTAACTGAAATGGTCAAAATGAAGTCACTAT-TTAAAGCCTAAGATCTTATACTATTCATCTGAAGTAGAATGCTAGTTAAAATTATAAATGGGGAAATCTATAAGAACATAAAAAAGAAGCGCTCTTCAGTGGTCAGCACAACTTCACACACACACACACACCAATGCACATGTGTGAGCACACACACAAACGCA-TCACTCTGTACTAAACTCACACTTTCTGGAATGACTAATTACATAAGACAAGACAAAAGTACCAAGAACCTTGACACACTTCCTTTATAAGATAATAGCCCCAAAGCAATATCATGACTAACAGGAAATGTCTGGGTGGGTTCCCGCATTTCA-------------CTTGTGTGGCTACATAGATTAGAATTTAGATCCACAATAAAAATCCCACATTAATGGTAATAAAGAGTAGCTTTCTGCATAGAGTTTGTGGTGAGCTAATTTGTACAACTAATTTTCACAGCTTCAGGAGACAGAT----TGTCATCACTAGACATGGTCAAATAT---TGGG------------TCACAGC-AAACACAACTCCTGCTTTAGATTCTTCAGTTGGTTATCTACAACTGCTGGGGTTGCCAAGTATTTGCTACATTGA---GACATGACCAG-ATCTGACGATTTTGTTCTGTGTCCTGC------TCAGACAGCATGTCCTAAATGTCTTCTATTCAGT----------GGATGACAAAGAAATTACAAAAATGTCAAAGAGCTATTTTTCTGTCACAATCATGGGTGCTTAAATTACTTAAG-TGGCAACACCAGTCAAAAGACATAATTCATACATTAGGAGCTGAACAGACTCTTATAGTGTTTCCGG s bosTau2.chr23 1083591 1770 + 41602928 ATTACatatatattt-----aaaatttttttCTTTCAAATCTGTTATCAACA-----------ATTAGTTTATGAATCTTACATCACTAGAAGTTCAATGTTGCATTAAACTACTTTCTGCCAAGTTAATCATCTTACATTTAAAACAGCTGTGATAATTCCATTTAGTACGTAGATATTGAAAATCAATGACAAATGCT-------------------AAAATACACATAGCCCATAAAGAAAGCCAGTTGTTAACTTATCAACATGGAAAGATCTTTAAATTAAACATTACCAACAAAATGAAAAATATATTAAAATAACATGTTATGTATAAAAAG-TACAATGTTATGTGTGAAATGCAATGATTCTGG--ATCATCAACACAATGTGGGTATTATTTGCTTTTCTGCCTTTCACTTGGATTTTATTTCACGGTCAAGTTGCAATatttagatgttgtgaatttagatgttgtgaattATGTAAGCTATTCCTTGGAACCAAACATAAGGAAGTAAAAATATTGTAATTTGGGGGTTTTATTACAAACACCCTGTCaataaatttaataataatttaattttaaaattatgaaaaaaaCTTGGAATCAAATGCACTTTTATAAAGCTCAAAATATGATGCCTCTATGAGATGTCCCTTTTCATCACAAGAGTAATAAAGGCATATTAAATACAAAG---TTAAATATGATTTATGGCAGCCTTCTATCTGTAAAGACAAAGCTTCTTCCATAACAAAACAGTTCTTTTGTAAGAATTAATCCCAgattttcaaagctgtatttgaaaaggatacagaagttgttaagagggaattgaaatacaagatatattaaaaaatcataaaaggaagaggttgtaagagctcagggctcatagcccagaaaattacaagtctggattctatggaaattcaaa----aaaacaaatccctccacttattccattatctttg-----aggaatggtggaaaagaag-accaatgacaatggt--aaatgaagcaattatcttcaaaaccaagagcttaaaatattaattataggtaagatgctaacttaaattacaaatgggacaatttttaagtacagaaaatggaaatgggaatca--tgccagcacaattgcacagaaata---------------------------aggcataaacacattctttcttt------ctttcttttttcagatttactagcccagtaagacaaagaaatggtgttgaatatctggatatttcagcTTAATaagacaaagctcagggtggaaaatgataactaaaagcatatgtttggggaaaatctatcataggaggatgagacaggttgtgggttactacaaagattagaatttggctcagtgggtgaaaattcaggttcagtgtaatgaagagtaggtttcccacaacag--catggtctgctaacctgcatg------tgctgaggacacataagacatataagctctcctctctggatgtggtcaaatacaggtgggaAAGTGAAAAATTAAAAACAAAACTCACCTTTTGCTGTAGAAGAGCCTATCAGTTATTCATATC-ATTATGGTTGTCATGTGTC--CTGTATTTACAGAACATGTCTTGTACTTAATTACTCTGTTCCGTATCCTGTACTAAATTTGACTGGACACATTACATGTCCTTTATTCAGGTTTCGTCCAAAAATTACAAAAAAAAAAAAAAAGAGAGAGAGAGATAGTTTTCTGTCACAGTAATTGGCACTTAAATCACTTAAATTGAGAACGTTAGCTGAAAGCCATACATCAAAAATAAAAATCCGGACAATCTCTTTCAGTTTTTTCAG a score=2920 s mm7.chr9_random 3510965 194 + 9745104 CTGTCCTGGCTAAAAGACCCACCA-GGGGGACTGAGACTTGAAAGGACTTGCTTTTCATAGCCAAGAAGAGAAACAAAGGAGGCTGTT-TTTGGCTGAAGGCCCAAGTCGCGACATATAACTACCATTAATTGGTGAAATAAAGCCAAATCCATTCACACACCCTGAAACTCA-CAAGTCAACAGGAGCCTCGCTTC s bosTau2.chr7 35751829 181 + 69141744 CAGGTTTAGCGGAAGGAAATAAAACGGGTCACTGAGAATTAAATGTATTTA-TTTGCACATTCAGGAAAGGAAA------ACACTGTTCTTTGGCCATAGTCCCATGCCGTGAACAGTAACCACCGTTAA----TAAGAAACAACTGATTTTTTTC-----CCCTGAAAACCAGCCAATCAGCGACACCCTCACTTC a score=9286 s mm7.chr9_random 3511415 669 + 9745104 AAACAAAGTCAGTAGGGTCAAGTAATGTTAGGTGTCTAGGTGACACTAAATAGTTACAACTTCT---GTAGTAATTAGATGCAAGCCAGCAGGAGTTATTTTACATAAAATTTGCATGAACTATATTTTAAT---------AAGTACTATTGGCATTTTGGTATTTTTCAGTTTTATGCTTTTTGAATAACAAAGCAAAAAAAAT--CAAACTAATTGCACTCATCAAAGTTATAAGCAGACTCTTAAATTCA--------------CATAAGGATCCTGAAAGTGTTGCTGACATCCTCGTACATG-AAACTGACGAGTACTAAATGAGCCAATGTCTAAGCTACATGTTATTTGAAACTCAAACATATGAGAGGTGGGA-ATCAGGATAATTTTA-GTGAAAGTATGTCTTTTC---------------------AAAAGcaagggttatcagtcttcagtatgtcttggaatcacagagggggccgctaaaatatgagttaatgagccttagacaagtgctttgatttagctgttctgatataagatcctagTTTATGAAAACTGTTGATTTAAGGACCTGCAA-AATAGTGTGAAAATAGTATCATTTGTTATTCTAGAATCTCCTGTCTACAGCTTATTTAAGTAAATTACTCAATGTTCTATGTTATATAACCATAGATCTTCATGTGGGAACTGTTACCTGTCTCCTACAGTTCA s bosTau2.chr23 1091027 632 + 41602928 aaacagaatcaataagattaagt--ccataatcatccaagtggaactaaaaatccataatttcttatgcaccaaataatttcaggtgaatgt---ttcattcaaataaaatttataaggtttctgtttcaatcatcagtctaagtaacattagtcctttggtattttttcattct----ttctaaaagaaaaaggcaaaaaaagtaataaaataatcatattcaacaattgaacaagcaAATATTTACATATAGCTTAACAAAAGACCTTAAGGAT---GAATGAACTGTTGGCATCACCATACAGGGAAATCAATTGGTAGTGAGTCTGCTAATGTCTAAAGTACATTTTATGTAAAGTTCAAGCAAATGAAAAGTGAGATACCTATATAATTTAATATAATGATATGACTTTTATAAAGAAATTTTTCCCTAAAAAAAAAAaatggttttcaatctttagcttgcatcagaatcacgtgaagggc----------------------------------------------------------atgATTTCAG--------------------AGGGACTTGAAGTAACAGAATAAAAATTTTATCACTCATCATTCTTGAGTCTCCAGTCTACCACTTCTTTTGATAAAATGCTCTATTTTCAAGGCACCTTAACAGGTTATCTCTCTGTGCTAACCTGAAAGCAGATGCTACAATCAA a score=1955 s mm7.chr9_random 3512542 95 + 9745104 GTTTTTAATGTTCTATAAAAATCATGTAGTATTTTTCTGCAGATTACTATTTATCCAACAAGA----CATATTCTTTCCC--TGGAGACAAACTGATGAGT s bosTau2.chr23 1092214 98 + 41602928 GTTTCTCTTAGTCT-TAAAAATCA-GTCAT-TTCTCTTGTATTTTATCATTTCTTCAACAAGAGTGTTCTATTTTTTCTTGGTAGGGGCAAACAAAAGAGT a score=26724 s mm7.chr9_random 3512693 947 + 9745104 AAAAATATCCAGTAAAAAATAAT-----------GATTTTGTTCCATGATAACACACAAACGTTCTATTGATTCAATAACTAAGGGAATAGAAAAGT-----------TTG--------GGTGGAGAGAAAGTCCATTCACTAAACTGCCTCATCCAAAATTTTCCTTC-CCTCCCCCCTTCTA---------------------------------------------TTTTTTCTTTTAAAAG----------------------------------------------------------------------------------------------AAACCTTT-----TAGAGCAAAGTTAAGCACTAAAA----------------GGGAGTTGATCCAGTCACTGCTGCAGGCTCCAACACCAGTGAATGCTTTATCGACAGAGCTCTT-GCCAAGTTTCCTACTGACAGAGAAGCCCTGAAATATGAACCTTGAAGTCAATTCATCAGAAAACAAATATTACATATAAATTAGCTGGAGGAGATGAAAACTGTACACATTCTCCAACTTCCATAATTATTTTGAAACAAAACAATCCCCTCCTACTTCTGCCAAAGTATTTGGCAAGCATACAAAAGTCGCTACAAATTAGCATAAGAAGACTTAAAACTGCATTTATCTTTCTAGATTAGTTTGAA-TAACTTCC-CATTTCTTAAGTTTTGTAGGTTGATATTTTGAAATGCTTTTTGGAGTAC-TTTTTAAAGACTATGCATATAATTTCCAGACTCTTTAGGTGAAGACAAAAGGCAATTTTAACTGCTAATATATTTACACT--------AGATACATTTATTAAAAATA---------CAATGAAAAATTCAAAGGATATTGAC-AATA-AATGTGCAGTTTTAAGAG----TTTATTTTACTTTTGAAATTAATCATATATGAAATG----TTTTATTGGAAATGTTCCACCAACCAGGCAATCTAAATCTGTAGAGGAGATTATTGTTAGAATGGTGATAATAATAAAGATTATAACCTTTCTGGATGCCGAAGATTATATTGATATTT----------ATGCTCACAACCAGTTGCCACTACTTTACAGGGAATATTCTAAATTTATTCACATACATCAA-CTTCAATAATTCt s bosTau2.chr23 1092321 1136 + 41602928 AGAAGCATTCaataaaaaaaaatttttttaaCTTGACTTTATTCCATAACTACACACAAAAGGTATATTTATTCAATATCTA-TTCCATAGAAAAGTCATTTGTAGGGTTGACTAGAGTGGTGGGGAGAACGGTCATTCATAAAATTTTCACCTCCAAAATTTTTCTGCACCTTTTTCCTTTTAAAATAGAATAAAAGTCggagaaggaaatggcagcccactccaatattcttgcctggaaaagtccatggacagaggagccaggcaggctgcagtccgtggggttacCTGACTGAGCATGCGTTCATGAGGGTGGAGGGAGATGGGTTGGTAGCAATAAACTGGTAAAACTAAAATAAAATAAAATAGGAAAAAAAGTCATGTGCGGCAGAGAGCTGGCCCTGTAGCTGCTG---GCTCCACCACCAGAGAATGTTTTATCTGCAGAGGTCTTTGCCAAGTTTCCTACTGA--------------AATATGAACCTTCAAGTCAATTCCTCAGAAAACAAATATTACATACAAATTAGTTG-AGGAAAAGAAAATCACACACATTCTTTAACTTCCATAGTTATTTTGAAACAAAACAAACTCCTTCTACCTCTGCCAAACTAGGTAGCAAACACATA---------ATGAACTA-CATTTAAAGCCTTAAGACTGAATTTGTATTTCTAGATTAGTTTCAGTTAACTTTTGTGTTGTTCAAGTTATCTATGTGTATATGTT---ATAACTTTTAAATTACATTCTCAAAGATTATACATTTAGT------AAGCTTTTGATTAAGACAAAAGACATTTTTAAATATTAATATAGTGATACTTATACGAGGGGGACATCTTATAAACATAGTGGAAAATCAATGGGAATTTCAAGGGCTACTGGCTTATATAGCTTGCAGTTTTAAGGGGTTTTTTTTTCTGGTTTTTAAGTTAATAATAAATGAAATGCTGCTTTCCTTGAAAACATTCTAACTGGCAGATAACCTAAATGTACAGA----ACAATTATTAGGATGATACAAGCTATAAAGATTTCACCCTCTCTGGATACAAGGACTTATATTACTGTTTTTAAATCACCATTTTCATA--CAGTGGACATGACGTTACAGGGAGTAGTCAAAGTATACTTACATGTATTAATTTTCAATAATCCT a score=7955 s mm7.chr9_random 3514699 475 + 9745104 TGAAGCCATGGCTTCTAGAATTACCATTGACAGGAAAGCTTCAGCTGGCAGCACT---GCCATCTACTTTAGTATAAAGAA-CTGTTTCCTCCACAGGAAGCA--CTCCATCCAGTAACCAATGGGGACAATGGTAAACCATGTTAGCTATTCCATCTAAAAATTGGCCAAGTCTGACTA--CCCAT-AGCTCCAAAGGCCATGTTCAGCCTTAAACCTAAATTTGactactcgctcaactc-actcctgtttccttctcccttccacaaactgggattccaagaacacttcataatacatctctcacctagcaat-ctccatcttaacattggcttt----aaacctagccc-------------------acaataAATGATATTTCCACATAATAC-----TTAAGTG--TGTTTGTGTTTATTTACAAAC--------------------------TGATAAAAATTTATATTCAGATGGTTATGATGATATATCTTATTTGGTGGTAAATATTTCTTGATTTTAGGATTCTGTTTTT s bosTau2.chr23 1093627 528 + 41602928 tgtagccccagctgctggaaatgctgttggcagaaagacttcagttggcagagcttgcgaagattatctcagccggagggatctgcacactccccaggg-gcagcctctgtccagtgattgatggag-cgaaggcaaaagac-ttggcccttttgtc-aaagatgggccaactctgactagtcctattagctccggaggctacagtcagccatgcgtttcagcctgactcttcactcagggctgctcct----cttcctctcttccgcagacattgactccaagaacactcc-tgataaatatctcagt--gctatactccatctcccaatctgcttctcaagaacctaacctgGAGAATTACATCTGAGTGATAATGAAACAGATTTGTCTATGACGCACATTTCCAGTTACTCTTTGTAGTTTTCAATAAACCTTCTTATAGATATATGTGTAGGTATTGGTCGAACTTCATACTGAACTGGATATGATTTT---TTTTATTTGATGCCTAATTTTGCTTCAGTTTGGTATTCCATTGTT a score=13139 s mm7.chr9_random 3516590 817 + 9745104 TTCTGTTCATTTAATGCCGTTAGTCCCAGTCTTTGTTCTTTCCTGATGCAAGACCATTGCTTTTCATATTA-ACGCATTAAATTCATTTCTCACACTATCAGTAAATATTAGG---ATAAACAATGGTTTTCTCCTCAGTTTTCTTAAATATTATG--TAGTTTGTCCCACTCAAAACTGTT--CTTGGTCAATTAGAACCGACTTCTCCTACTTACTCTCTTACCCTTTCTTCAAAGACGTGATGAAATGCTTTTTTTTTTCATATCACCTCTATGTAACCCATTACATATATAGT-----ATGTGCCTCTTTAAAGAAGTTAGCAACCTACACAAGTCTCTGTCACA--TAAA----AAGTTTACTGGATGGATAAGACAATGGCTCCAGAGAGGTATGTGGGTGCTTCGATTTGTCTCTCTCCCCTAA-TCCATATTTAGGGGAAGGCCTCGCCAAGTTTTGTGTCTTTGCTATGGAAATCAGACATTCTTTAGATAAAAGTTTTCAGAAC-----AAAATTTAGGAGCAGGCACTAAACTAA-TCAGATTCAAGAAAGTTGATATTAGGGCAGCCAAGAAGATCAGTCATAAAA-TTGCCATAAACTCTACAG------AATAAGTTTGATTTACCCTGCTCTCATGA-----CTTTTTCTAATCTTTTACC--ATACATTGCATGTGCAGAAAT-ATAGAAAAAAGATT------TTTCCATTCTTATGTAAAATAATTTCTAAA----ACACTGT--CAAGCCTAAAGAA---TAAATCTATTTGAATAATAAT-----------TATTAAAAAGTTATTTTCTGTGGTGTTTTTCTACTTACTCTATAGAT-ATGTGTGTATTTATATGCAGAAATAT s bosTau2.chr23 1097256 837 + 41602928 tttttttttttCAAGGAAGCTAACTTTAATCTTTCTTCCT-CCTGGGCCATCATCGTTTCCTATCTTCTTGTACACATTAA-TTTACTTCTTACTTTA---GTAAACATTGAGGATATAAATCTCGGCAGCCTCCTCAGTTTCGCCAATTATTATAAAGAGTTGGCCCTATTCTAAACCATTTCCTTGGTCAACTAGAATCTATTGCCAGCACTTAACTTCTGACC-TTCCTTCAAAA--GTCTTAGAGTG-----TTTTTTAATATCTCCTTCATGGATCCCATTA-ATACAGAGTGACATATATTATCATTATCAACAGTCAGCACCCTGCACTTGTCTCTGCCAGAGATAAATTCTAAGTTTACTGG-TGACTAAGTCCGTGAGTTTGGAAAGTT-TGCAGATGTTTAGGTT---CCCCCTTGCTTACCTCCAAACTGAAAGGAAATCC------GGCTCTGTATTTCTGCTA-GAGAATCAGA--TCATTTAGTCAAAGGTGTTGAGAATGGAAAAGAAGTTAGAAGAA--CACCAAGTTAACTCTGATCCAA---AGTTGAGCTTAGGGCAGCCAAGA---CCATTCAGAAAAAGTGCATCAAAAGAAAGAGGAGGGAAAAAAAGTTAACTCATTCTGGTAAGATACTGTCTCTTTCTCTATTTTTTTTTTTAATCCAATGAATGTCTGAAAATTAAAGAAAAATAATTGTCTTCTTTCCAGTCTCACCTAAAATGATTTCTAAAACTCACACTGTGGAAATACTAGAGTATTGTAAGTTTGCTTGAACAATGTTGCATATAGGTATATTGAAAG--------CACTAGTATTTCTGT-TTTACTGTACAAATGATGT---TATTTATGTTCTGAAAAAT a score=15355 s mm7.chr9_random 3527702 1245 + 9745104 TTTTTTAGGACCTTCCAAAAATTGA-GGAATAG----TTCCAATGC-TAGTCCAC--CCTTATGATTTTTATGAACTGACCAGGGAGATAGCA----ATACATAAAGAGGTAGGAAAGCCACTTAACTCCTGCATGTGCACCCCTGACATTCCTAAAAGAATCACTAAGAGTCCATTTGAACCACTACATAGAAGAGCCCTTGTATTTGGATGCTGCTTTTCTCATAAGAAAAAAATG---TTTAGTACTTTACAAAAGACTGTAAGTGTGAACATATCGAAGAGG--TAATGTGTTTACCCACGAATTTACCAATAAGTGACTAGCTGACCTATATTCACTTCAAGTTAATGTGTGGTTCAAATTTATGTAGTACCCATGAAGTTATACAGAAAAAAAATGCATGAAATTTCTTGTGTTCTTGCAAAAAGTGAAAACTGTTAATACAAGTACAAGAATACCTGTGATCTAACACA-GCTCACATGTCCCTTTCatttaaaataattaa---------taaaccca--------tttatatttattaattattCATAGAAAACATACATTTAGTTAGCACTGTAAAAGCATATGTTAGAAT----AAAGAGAGAATTTAAATCATAAATGTAGGTATTATGTAGTCTCAAAGAT-AAAATAAGAAT----ACTCAAAAAAAGTAAAGAAATCAATGAAACACATCTAAAAAATATATATCTAAAA---AGGCAGGAAACTATAAAGGAT--ATTTTTTATTAAAAGGATCATGGCTACATCGATGGTAACTTGAGAAATTCATCCTGGATGCAA------------------TTGGTTTTCCAGCCCGGA---AATGATGTGAGCATGCAGTCT------------TGCTCCAC---------------AAGGCAAATCCAACCTTGATGAGCTTAGCGTACTAAGGAGATTAGAACGTGGCAGCAGGAACAATCATCAGGAAAATT---AAATGGCT------AGAGCAGCAAAGAGGAAGTGAAGAGGAAGATAGAAACCTCAGAGGAACTGGAATGGTCTCATTGCTCAAG-ATTCCAACCGAACATGGGAACTCGAATAAAGA-----CAAGAAATGCAT----CATTTAACTGAATTTGCCCAGGTTTCAGAAACATCCTTCTAAGCAAGTTTGGAAATTTCAAACCTTTTCACTTG--------------------TGCTAAAAAGTATCTCTTGCAAATCAATTATGCATCTATGTATCTT-GTTATATTTATCTC-TTCACATACATAGAAGATCTGTGCTTTGCCCGTTGGTTTGTACTCTGAGCATCACTTGA-TTGAGCT---AAAAGATGAGAATATTTTTGAAGACTGCACTGA s bosTau2.chr23 1101486 1327 + 41602928 TTCCTTGGACTCTTCTAGAGATTTCTGGAGTAGAGAATTTCGGTGCAGAGTTCATTTCCCCAGGAATTCTATAGACTGGCTAGG-AGACCACATACTCTACTTGAAGGAACAAAGAAGCCACATAAA----GCACATGGGCTCTTAACATCTCTGGGAGAATCATCTAGAGTCC---------------TAGCTGAATCTCCATATTTGCAAAC--ATTTTCATTTGGGAGAGTATTGCATTTTATTACTTTACAAAGGACTGTA-GTGTAAATATAAAGCAAAGGACGAAGGTATCAGCCAATTTGCTGACTAGTGAGTGACTCATTGGCCCACACCAGCCTCCAGCC--TGGGTGATTCAGAGGTCTGCCCCACC-------------------AAATTGCATGGACTTG--TGTGATCTCACAGAT-GTCAAAATCACCAATGTAAATATGAGAATGTCTACGGTCTAATATATGGTCAAGTGTGCCCTTGAGTTACAGGAATCAAAACAATGGTTAGGCCAAAATGAGCTTGCCTAGTCATTAATTGTTCATGGAGGACATATATGTAGT---CTCAGAAGAAGGGCGTGTTTGAATTAGCAAAGAGAGAATTCCAAGTACATAAATCAGCACGATTTAGGAATAAAGATCAAAATGAGAATGATGACCATGAAACAATGAAGAAATAAATTTAATGCAAGTAGGATACAATGATGGAAAGTAGGGTCGGGAAGCTCTCAAGGAGTGATATTATGCAAAAAGAAGT-------CATTAAAGTTAGTCTAAGAAGTTCATCCTTGATACACCAGGCATTAAGCAACAATTTGGTTTTTTTGGCAAGATACAATGATGTGAAAAATAAACATAAAAAAATAAAATGATCCAAGAACATGTTTTAGAAAAAGTAAGTC-AATGTAGGTGAACAGAACAGACCCAAGAGATTACAACTTTATGGCAAGAATAACCACTTGAAAAGCTCTGAAATGACTCATTAAATTACGGGCAATGAGAAGTGAGGAGAAATATGCAAATTTAAAAGACATTAAAATTATATTATGGTCAAATCATGCTGACTGGATTTGGGGAAGGGGAGATAAAAGTGCCAAAAATCTCATTTTACTTTTAAGTCAGTTTCCTTGGGTGCTGGGAATAT-TTTCTGACTAAATTTACAATTAACAGTACATCTAATTTGGACAATTGCTTCAGCCAGTCTTCTGGCAAATATTCCACTCAAATCAATGATGTATTCTCATATATTAATTACTGTCAACTCTTTCACACCCAGAAAAGGATTATATTTT-TAATTTTTTCTATAGTGTTGCTATCGCTTCATTTTAGCTGGAAGAAGGTGAGGGTTTTGCTGAGCACAGCGTTGA a score=4029 s mm7.chr9_random 3529041 354 + 9745104 AGCGATGGATTTGGATCTTTGGTGAAAAG-GTATATGCATCGTGGAGTGAATTGTTTGCTGAAACATCTGCTCAGCCACAGCATCCAACAAGAGTAACAGGAGAAATGAACAGGAAGGAGAGACACATGAGCCACTGTCCAATTCAACCCCCAGGTTCTCCCAGTAAGCTTGGGCTTCTTTATCTTAG--CCCTTTCTTTCATGGTGACtgctatgataaacaccaccaccacagcaaaaagcaatttagggaggaaaggtctgtgtaccttacacatcctgggtcacagtctattgatgaaagtcaaggcaggaagtcaagacaggaaactggaagcaggaactgaagtagaggct s bosTau2.chr23 1103685 250 + 41602928 AGGGATAGATCTAAAT-TTTACTGCAACGTGTGTGTGCG----AGCATGCAATGTTTGCTGAAATGTCTGTTCAGCTACAACATCCAGCAAGAGTAA---AAGAAATGGGAAGGAAGGGGAGATAAAACAGAAACTTCATGTCTGAAACTTCAGAATTCCTGTGTATGCTT---TTGCTTGACTTTAGTACTCTTTCTTTAA----GATTACTACTGTGAACTC------------------------------------------------------------------------------------AGCAGGAATTTAAGACAAAAAG--------AGGAACTGGAGAAACGACT a score=10007 s mm7.chr9_random 3529684 409 + 9745104 AATGTTCTTACATTTGGGTGTCTACAATAATGAATGTAAACACCTCAATTTTCTTTCCCATGTATATCAATTTGTTGCTA-CCCTTACAATTTTTATAGCTTTACTGGGTTGAAATAATAAGAACCCTTGAGGCCCATTGAAT--------CACCCA-TAATGGATATTAGATTCATATCTGAG-GAAGGAGATTTCCTCAGAGGAGAATTTTAGATTACAGA--ATGCTATACTTCCTTTGCTTACCACCTAATTGGGCCTTTTGTGAATAAAGTCAACACAATTTCTTACATGTGCATATAAAGTTACATTCTGTGGAGATATTTTGTAAGTGAGGATTTCTAAGTACT-----AATAA-----GTTATTACCTGT-TAGACACACATATC--------CCAAGTTAACAAAACTCCAAACAAATGGATGATCAAATTT s bosTau2.chr23 1104005 436 + 41602928 AACGTTTTTGCAGCCGAATGTCTGTGGTAATGAAGGGAAACACATCATACCTCCTTCCCAGTTAGATCACTGTGTTGAGGTCTCTCCCAAATTCCAAAATCTCACTTGGTTAAAGCGGTAGTAACCCCTGAGGCACTCTGGATAAAACACACATCCATTTGTGGCTCATGGTTTC-TGTCTCAGAAAAGGAAGATTCCTTGGGAGATCATTTTAATCCCTAGAATATGTTTTAATTTCCTTGCTCACCACCTAAGGGGGCTTTTGGTGAATATAATCAA-ACACTACTTAATGAGAGGGTGGAAAACTGCATCCTATGAAGGTGAATTGGAGATGAGAATTTTTACACATTCTAAAAATAACTGAGTTTATTATCTGTAAAGGAACACATATCCTGAGTTTCCAAGTAAACAGACCTCTGCATAAA---ATAACTTAATTT a score=6187 s mm7.chr9_random 3530497 494 + 9745104 tttttgtttttgtttgtttttgcttAAGTTAGATAAAATGCACTATTTTGGTTCATTTCTCAGGTGTCTACAAATGGATTTCTCTCTTATTTAATCACCAAAAAAA-TAACAGGTTAGAAAGCATGCAGAAAGCTGTGGGGACAGGAG-ACCAATATGGAAATTCTTAGTTTGGGCCCTGTTCACATGGGCTGTTT----CTGAATGTAAGGA-ATGTTGGTGTTTAATAGGAAGTGTTACCTGAAGATAAGAGTTAATGTTCTGGAGAAACTATACTGCCAAAACAAATACTCTCTGAAGTTTTTCTGATAACACAGCT---CTGCTGGTACCACCCATGATCTGACCCTGCTGTTAGTTTACTGGAAGCAAATAGAAGTCTAAGCTACCAAAGG-CCTAGA-----GAAAAAGACCAAAAAAAAAAAAAAAAAGATTCTGTTTTGAA------AGACGGTAAATCTCCTAGTCAAGTGAGCCACTGGCTATGG-GACATTTGTTTAATTTTCACA s bosTau2.chr23 1105166 477 + 41602928 TTTTCACTTTTGCTTACATTT-------TTGGAAAAGGGCCATCATTTTGCATTCTCTGCAAGGCATTTCTGGCAAGATTTCTTTTTTATGCCATCCCCGGGGAAGGTGGCAGGG----------GCAGAA---TAAAGGGGCGCAAGTGCTAGGGTGAAAACTCTGAATGAAGGATTCTTTGTCCTAGGCTTTTTGACCCTGAATACAGAGAGATGGTGATGTGTCATAAGTAGTGAGACCACAGTAGCAGGGTTAAACTTTTGGGGAAATGTTGTGACCAAGAGAACAGAGCACAGAAGCTACTCTGAGAATGTAGCTTGTCTGCTTGCACCTCCTGCCCTCGGACCCAGACGGTTGTCTACTGGAGACACCCAGAGGTC----CCATCACAGGACACAGACTCCTGGATAGGGCC----------------AGATCCCACTCTGAAACCCTGAAACTGTGAGTCTCATCATCACTGGTACCTTTGACTTTGGAGATGTGTGTTTCATCCTCACA a score=11824 s mm7.chr9_random 3540574 521 + 9745104 TGTTATAATTGAGTACAGAAACTTAATCTTTTAAATTCAATTGCTGACAAGCTAAATAGCTTATGGATTAGTGTA-GAGGTTCCTATTTTCCAACACTATGGA--GAGTAGTTCCCCTTAGGGATGTGGTACCATGTCACACTAACAAGAGCATCTCTACAGAGCTTTAACAAAAGGGGTGACACATCCTCACTTCAGGTCTCCAATGCAATTTTCTCATTACAAGTATAGGCAAAAAATGTTATCACTTTTAAATATGTACAATAATAAAGATA-AAAGCTTAGAAGAGAAGGTGGTCGA-TGTTTATCAAGTTCAATGGAATGAGAAAA--GCTCTATGATGATGCATTGTAAAAAATGTTCCCTTTACCATTGCTCTAATATGATACCCCCCACTTGAAATATAGGACTATATAAGAAGGTCCCTGT-GTGATATAAGC--TGAAAATCCTTATCTAATGTTCCTG-AAAGTACAAATGAATG---TAACAAAATTATTTCTCAAGCAAAAGTTTATTTGGAGATTGATTTT s bosTau2.chr23 1106658 529 + 41602928 TGTTACAGCTGGACTCACAACCTAAATCTTTTCAATTCAATGGCTGGTAAGCTAAATAGATTATGGTTTAGTGTATGGGATTCATATTTCTTAAGTTCAAGCAATGAGTTGCTGCCTATGGGGATGTGTTAAACTAACATGTGAATAATA-CGCCTCCGGGGA-CTTCAAACCAAGAGGTGCCTTGTACTCACACCAGGTTTCCCAGCTATTTTTCTCATAATAATTACAGAC--CAAATAGTATTACTTCAAAATCTAAGCAACAGTAAAGAAAGAAAGTTGAGCAACCAGGGTGATGAACTGTTTAACAAATTTAACAAAAGGAAACAAGTGCTGTAAAAGAAAGTGACTGGAAGAGGGTTCCTGGCGTCATTACTCATGTCTGACAGATTC--CCTGGGCTGAGGGATGCTGTGAGCAGTTTCCTGCAGCAATATAAGCTTTTAAGACCCTGACTCAGTTGTCTGGAAAAGTTGAAAGAAGTGTGATAATAAAATTACTTCTTCCACAAAAGCACATTTGAAAAGTGACTTT a score=32401 s mm7.chr9_random 3547419 518 + 9745104 TCTTTTTATTTTTTAAACTGGCATTATTTATTTATTTATTGGATTGTGAAA-CATCCTTAATTTGTTGATATAGCAAATAAATTTCAACTC----------TGCTATGCAAATGA-CAGAAGG-AATCTGCTCAGCGATTAATTTTAAAGTTCAATTTTATACAGGTAGCATGCTATATGTGAAAAA-TTACTAACTGAACTACAGGTATTAAGTACTGAAAAA----TAAACGtttattataatttattttatttaaCAATCTAGGAAGTTCACGGCCATCAGCATTTCCAGTGCAATTTCAGGTGCAATTGGAAATTCGGGAATTTCAGTGGAGCTGTTAGCATAGCGGACCGTGTAGGCAAAATGCATGCACACTTTTGATAGCACATATGAGAGGATCTCTCTAAAATTGACCTCATTGGTTTCATTCTCGGCAAACTGACCTGGACCACTCAACATGGCCTTTATTGTTCCTGATGTTAATGCGAGTTCTCTTTTTACAATAAATTCATGACCATCAGAAGATAATAATTT s bosTau2.scaffold7437 26225 527 - 38679 TCTTTTCTTTTTGTA---------TATTTGTTTATCTCTCAATTTGTGAAAATGTCCTTAATTCGGTGATGTAGCAAACAAACTTCAACTTCAACTCTGATTGCTATGCAAAAGAACAGAAGATAATCTGCTTTGCAACGAACTTTAAAGTTCAACTGCACACAGGCAACATGCTATATATGAAAAAATTACTAACTGAGCTGCAGGTATTAAATACTGAAAAAGAGCTAGCTGtttattataatttattttatttaaCAATCTAGGAAGTTCACAGCCATCAGCAGTTCCAGTGGAATTTCAGGTGCAATTGGGAATTCAGGAATCTCCTTGGAGCCGTTAGTGTATTGAATCTTGTAGGTAAAATACATGCATACTTTTGATAGCACATGTGAAGGGATCTCTCTAAAATTGACTTCATTAGTTTTGTTCTCAGCAAAGTGACCTGGGCCACTCAACATGGTTTTTATTGTTTCTGATGTTAGCGCATGTTCTCTCTTTACAATAAATTCATGACCATCTGAAGATATCAGTTT a score=36244 s mm7.chr9_random 3550116 1493 + 9745104 GGAGAGCAAGAGACTTGGGAGGAGATTCAGAAGCTGGGCCAAGTG---------TCTTGACAAGTTCCTAAGCACA----CTGTCTACCATTTTCCTGATACTATAACTTTGCAGGGACTTCCCAGGTATAGCATGGCTTCCCTCTTCCAAGGCCAG-TCCAAATCTTTACTTTCATTTTTCCTGGGACATCCCTTTGGGTTTGCAATTAGAATTCAAACAATACTGTAAAGTCATTTGCCTCAAATCTCAGCATTGATGAAAAAAATACTTTCATGTTAACTGAACTAGTTATAAGAGGAATATATTTAGATCATTGTTTAAAAT----CCTCAC--TGTAACCTATCCTAAAATTTCTTAAAGTAAAATAGGTAAGA-------TGTGCTATTAAATT---------------------------------------------------------AAAACGTTTGTTTTTCTGAGC---------------------------TCTGTTACATTTTATTAAAAGACATAAT---------AAATATGTA--------------------------------------------------------------------------------------------ATAATGTAATATAATATATCTACTATGAAGTTGGGTAGATTGGAAAATTATTAGTCAGACTATTAACACCTACAGTAAGGACCATATATTGCCTCAACAATAGCTACATAA--AACC-CAGCTCTTTTGCCTAAAGCATACACTTCCAAGAATGAAATAACAGAAACAGGCTGAG-CAAGGCATCTCTG-GCTCATAACTTCTCTTCTCACA-GATTTCGCCCCCTAGGAATACACTTTCATAAACCATTTTGCTTTGTTTGTTTAGTCGGTTGATTTGGTTCTGAATCAAGCACGGA---TGCA-----AGCTCCATGCTAAAAACCAAAAAGAACCACCATAGCCTAACCATGTCAT--AGTCTTACAAAGAGAACC-AAAACTA---TTAGCAGACCTGTGCA---TGCCAACA---GGATCATGTTTCAGGAATTAAAAGCTTGGGATACTCAGGAATCGGTTAACC-TCTGAATGGAAAACCACA----------CTCGAAGTGTCAGAGATCAGTAACTGTTCTTTGGAAAATACCCAGGGTAACTGTCAGGGTTGGTACTGTTCCTGTGCCCTTGAGCAAAAGCAATTACATTCTCTTTTCT-CACTTCTTAGCATAGGGAAACAGTATGTAGTAAATAGTATGTAGTATTACATACTACATACGGCATGTTGAAACCTTATAAAGATTATAGTTTCAACTTTTT--------TATTATGAAAGAACAAGCCATAAATTATC----GTTTACAGCAGGACTCATTTGTTTTACTTTAGTGTTGTGTAACTAACAGAGCATAAAGGCCTCACTCGGATTTTTTTTTTTCCAAAGCAATATAATTCAAATCACCTTCTCTGACCTATCATCTTAAAGGTTTGGTTTCTACATAAAGGAAATGAATCATTGTGCATGCCTAGCAGGCAGTTCAGAAAGCAGTACTATTCAAACATTTCCAAAGTCTTGAAAACATTTTCTG------------GACCTTGCTCTAGACATGACAGGAG-------------------ACTGTTGTGTCCCCGCAACCATTTCTTCTTTAAAGCATTTTATGTGGAAGCCAAGAAATACTCCCAATTTTTTTCCAGAATTTTTTTCAAAAGTTTGAACTT s bosTau2.chr23 1124290 1698 + 41602928 GGGAAATATAAGATTTAGGGGGAGACTCA-AGGCTGAAACAAGGGGTGCCCTTCTCTTACTAATGTCCCTGGCACGTGATCTGTCTGC--TTCCCCCCATGTGACAGTTTTGCAG--------CTGGGGAAG--TTGCTTCC-TCATCCAAGGCCAGCTCCAAACCCTTCCTTTTGTTCTTGCTGGGAAATCCTCTTGAGCTTTTAACTGGAATTAAAACATTACTGAAAAGTCATCTGTCTCAAATCTCAGCCATGGTGCAAAAGAT--TGTCCTGTGAACTGATCTAGTTACAGAAGGAAGTTTTTAAAATTATTGTTAAAAATAATTCTTTAAGATGTAGCTTATTCTAAAATTTCTCAAAGTAAATTGGTGGAAAGTATCATTGTGATGTTTATCTTtggcgtgctgcaatacatggggttgcaaagaatcaaccaccacttagtgactgaacAACAAGTATATATTTCATAGCACAGGGAACTATAACTATAGTCAACATTTTGTAATAATCTATAAAGGAAAATAATCTGAAAAATAGACATGTATGTATAGTTGAATCACAGTACTACAAACCTGAAACTACCACATTATAACTGAATTATTTTTCAACAAAATGTATATATATTTAATTCTAAAGACAAAACAATGCAATATAGCCACTATGAAGTTGGAAAAGTTGGTAAACTATTAAATA----ACTGAAACCTACAGGAAGGGCCGCAT---GGCCCCATAATATCCACACAAGGAACTACTGCTCCCTCGACAAGAATATAAGCTTCTGAGAATGACGGGACATAGAGAAGCAGAGGAAAGGAAGCCCTGCGCTCATAAATTCTCAGCTCCCAAGCTTTCCCTCCACAGGAACGCATTTTTATAAACCCTATT----------------------CTTTGGTTCTGAGTCGTGTAGAGACTCTGCAGGCCCAGCTGTATGCTAAAATGTAATGGGGCCAACC-TGACCCAGCCATGCAAATAATTTTTACAAAGAGGGCCTAAAACCAGCATTAACTAAACTGTGCAATATGCCAGAAATTGGCTCCCATTTCAAGAATTAACC-CACAGGGTCCTCAGTAATAAGTTAACCCTCTTCATGGAAAACCACATTTTTATCCACTCAAAGTATCAAAAGTCAGTGA----TCTTTGTGAAGTGCCTGAGTTA---GTCAGGGGAGGTATT--TTCTAAGACCTTAAGCAAAAGCGGTTACATTCTCTTTTTTTCACTTGTTCCCATGTGAAAGGGGGGGAAAAAAAAACTTACATGTTATTACAT-CTA-ATGTTACATGTTAAAGTCTTGTAAAGATTAGAGtttttattttttattttttttattatGGGAGATCGGTCCACATGTTATCCCAGATTCATAGCAGGACTCATACACTTTG--TTAATATTTTCTGACTAACAGAGCATGAAGGACTCACACAGATACTTT-----CCAAAGCAATAAAACTCCAATTATTTTCTCTGAGCTATCATCTTAAACGTTTGATTTATACCAAAAGGAAACAAATCCTACTGCATGGGTAGCAGCCAGTTCAGAAAGCTGCACCAGTTAAACATTT-CATAATTTTGGAAGCATCATCTGCCAAAGCAGCATGAAACACCCTTAAACA-GACAGAGGGGAAGGACCAAAAGACATTGCAGTTGAATCTCTCTTATCAT-----------AACATGAGACACAGAAGCCAAGAAACATTCACAATTT----------TTTTTTTCAAAAGTTTGGACTT a score=7709 s mm7.chr9_random 3551678 297 + 9745104 CCATTAACCTTTGCCCTAAATTCTTAACTCTGAAGAGCGTTGTGCAGTGTGTTTTAAGATAAACTTAAA-GGAGATCTAGGAGACATATCCCAGATTCTAATCAACTGTTAAGACCCT------GAAGAAGCAGAA-----TGAA-----GGAATGCCTTAAATGTAAAGCTGTTCAATTTTCTAATCATTTACCAAGAGCGAGAGGATTGCTAATCACTAAAGATGCATTCATTGTAAACAGCTACTA--TTTATCTCACTCAAAATCACAAACAACTTTGAAAAGTTTGGAAGATGAAATAGATATATTTCATT s bosTau2.chr23 1126446 296 + 41602928 CCATTGATCTTTGCCCTGGCTCCTTAACTTTGAGCAGTCCTGTGGCGTGTGTTTGAAGATAAACATAAGCAGGTTTCCAGGAGAGAGAATCCATATTTTAGCTACTTGCTAAGACCACCACATACAAGAAGGTGAACCTGTTGAACATTTAGAATGCTTTCAATTTA------------TTTCTAATCATTTTTCAAGAGTGCA--------CAGTGAATCAGGATATATCCACTGGTTGCAGCAGATGGTTTCATTTTACTCAACATGAAAGATATTTTTCAGTATCTTAGAAGGTAAAATGAATACATTTTATT a score=8741 s mm7.chr9_random 3552628 421 + 9745104 ATCATAGTTTGTTTCATCTTGTGCAACGTACTGTAAGTTCAGCAGACCTGTGTCCTGTTTCCTGGCTGGCCAGCAGCCTTTGAATACT---GTTATGCTAGAAACATTTTC-TTCATGAAGTACAATCCATAAAATATGTTTCCACA-----GGCTTTCAACTTAGAAAACAAAACACCAGATATGTGATT---------------GTCCTGTGCT----------CAAACTGCACTCACCTACGAAAA-ACTAATTTTCAAGACAATTGCTGTAGCAAATTAGCATTTGGGGTTAAAATGAATACTGCTTTGAGCTCTGACTTTGGAGG-GAAATCCTTGCTGACAGCAGTGTCTCCTTTGCCAGTTAATGTCATTGACAGCTGTCCCATGATCAAGAAGTTTCTGTCACAGGATTAATGGCATCAGTCCTCATG--TGGCCTCTAGTCCCAGCCTTC s bosTau2.chr23 1128933 445 + 41602928 ATCAAAGTTTCTTTTGTTTTATACAATATACTCAAAGTGCAGTAGATATTTGTCACATATCCTGGTTGCCCAGCATATTTTGAACACCCTGGGTGTGCTAGGGGAATTTCCCTTCATAGGGCAGGACCC-TAGAACTCACTTCCACATCCTGGGATTTCAATGTTAGAAATAA-----CAAGTGTGTGACTTGATTTGCACATAGAGGCATGTGTTATAATTCTCACAGATTAGATTCATCTATGAGAGCATGGATTTAGAAGTGAGTGGCTTGAGCAAGAACGCATTGCAGACAAAGATGAACATTGGTTTGGGTTCTGGATTTGGAGACTGACTTCCTATGGACAGCAGCAGCCACTGTGGAATATGAGTTT--------CTGTTCCCTGAGCAGGAGGATTCCATCATGGGATTAAGAGCTTCATCCCTGGAGCATGGCATCTAGCCTGATGCTTC a score=16718 s mm7.chr9_random 3558805 781 + 9745104 CAGCTGCTGTATCGTCCTGACTCTAGTGAGGTACAGCAACTGCTCCTTCTGCCTTATTCCTGCTACTTCATGAGACATGGCACTGTGAAAAGCAGCGTGGCTAATCAAGTACAGACCT-CCAGCTTCTCAACACCC-CTGCCAGTCTGCCAATGGTCAGCTCATTAAACAGTTCTGTATTTAGGAAGTGCTGATAGCCACTGTGCTGTCCAAATTTCTCCTCTTTCCTCACTCCTGCTCCATAGCTGATTTCCAAGCACCCCCTTCACT------------TTATGTAAACTGAAAACTGTCCGTTCAAGGGCAGCACAGACTGTAATATTGAATACAATCTTTGCAGTACTTAAAATATTCAGAATTAGCTTA---CACTGATTCTTTCAAAAA-TTTCTGAAATTGTGTTC----GCCGAAATACCCCAGTTTTCTAGATGTTTGGATT-TATGCAGTTTCCATATAAGAGTCAAAATGAAAG------------------AAATATTTTCTTAACACAGACAATCTAGACACAATCCAAACTGCTTACCTTTGAGGATTTTAAAT------------------ACATGTGTGGGCAAATACT---CCTGCTTTTGGATTT-CTTGGCA-TTAGACTGTGTTTAT---TTCATAAACTTAGACACAAGGGAGGTTAGCTCATTGTTATAGTGGCAAAAAAAAGGTGACATCATAGTCAAT---ATTTGAGTG-AAGCAAATATCATATAACTTCTGTTTCA-AGGTTTTCTCAAACCTCAAGGATAGGAAAGTTAAAATATATAAATGTATGA------------ATAATTCTTGTTTGATGGTTT---ATACATTTTGAGGACAA s bosTau2.chr23 1136912 844 + 41602928 CAACTACTGTAAAGTACTGACAATCCAGAGATGTAGCAAATGTTCCTTCAATTCTTTTT-------TTTATGAGAAAAG--------CAAAATAGCGTTAATATCCAAACAGATGCCTTCCAAAATTTTGACACTTATTAAAAATCTGTGAAGGCTAAGTTCATTAAATAACCTTGCACTGAGGAAGTGCTGATGGCA-----GCAGCCTCCATGTCTGGCTTTTCCTCACCCCTTCTGCATGGCCCATGTCCAAACATTCCCCTCACTCACTGCACACATTTGCCTAAACTTAATAACGTCAGCGCAGGGACAGCCTGGGTCTGACTGTGGAGCCTAATCTTTACAGCACCTGAAATATTCAAAGTCATAATAATCCTCATACACTTTCAAAAAGTGCCTGAGACAAACACCACGGACCAAAACTCTCCAGTTTGCAAAATATTTAAGTTGTCCACTGTGTTTATACAAGGGCCAAAAGGGAAAGCTTGTTTTCAAGAATATAAAGAGTTTCTTAACAAAGGAAATAGAGAAACAATTCAAACTGCCTATCTTGATTGAAATTAAATTCATAAGAGATGGTTCCCATATGCAAGGAAAAGTGCTTTGTCTACTTTTGTATCCGCGTGGCACTTGGGGCCTATTTATGACTTCATATACTTGAACACAATGGCAGTTAGCACCTAGTTACAATGGT-AGGGAGGGGTAGTATTGTGGTAGGTATAATCTGAGTGTTAGCAAATGTCATCTAATTGCTATTTCCTAGGCTTCATCAAACCCAGAGAATAGAAAAATTAAATGATATGACTTTACAAAATATGTTCCACATAATTC---TTTTATAGCCTGAGATATACTATGAGGAGAA a score=5093 s mm7.chr9_random 3560389 180 + 9745104 aGAATTCTTTA--TATTTCTCACTGGGGGTTCCACTAAAGTAAATCTTTAATTAAAGC-TGGC---CTTCAATGTGTTACAAAATATTATAATTCCTGCGTTAACCCTAAGACTGTCACAAAATGATCACGTAAAGAGGTACTTATCTTGACAAATGACTT--TCCAATCTACTTGCAGTTCAGTTTT s bosTau2.chr23 1138104 186 + 41602928 AGAATCTTTGAGGTGTCTCTGATTGGGAATTCTGTTACAGTCATTCTTCAATTAAAATATGACATGCTTTAATGTGCCACAAAATGCTCTCAT-CCTACTTTAGAC-TATCCCTGCTCTCAAATGATTGCATAGAGAGGAATTTATTTTGCCAAAGAACCTAATCACATCTATTTACAGCCCGATCTT a score=3557 s mm7.chr9_random 3561002 164 + 9745104 CTAGCCTATTCCCATAGTATTTTGCTGAAACCAGGCATACAGCTGTGATGTCTAATAACTAGGCCGCCTACCATATGTGAGGAAATATGAATTCCTTCATGTTAGGGCATTAGCTCTTAGATTGCAAGTACATTAAGAAAGAAGAGCTACAGCTGACATCATAT s bosTau2.chr23 1141796 158 + 41602928 CCAGACACTTTCCACAGTGTCAAGCTGAAA------ATACCTACATGGTATGTTATCAGCCAGAAAGCTACTGTATATGAAGAATTATTAATGGCTCCAGATCAGGACATCACCACATGCATGACTGGTATTTTGAGAGTCAAGAGCTATGACTGAGATAATGT a score=5806 s mm7.chr9_random 3564240 401 + 9745104 AATTTAAAATAAACTGTTCATTAAATTCCTCCCATTATGTCTTTCTTTTTCCATTTATATT---AATATATTCTCAACACAAAGAGCCATAACCCACTCCCTTAACTTCTCTG---------GTACACCTAACTACTC-TCTCTGGGACAGGAAATGTC--AAGTTTATGTACTAATTTGGTTCTAGTCCATGAAGTTTAATCTTAACACA----------------------------TATGGATAGTATAGT---CTAAATCGACAAATAAAGAAAG-------ATCCTGTGCATAATAATGTTG-----ATGCATAGTTTTGGTCTCA--TACATAATTGTTCATTAAAAATACAGAACACTGACTCTCTGAAG-----------GAATAATGTGTTAATGATTTAGGAAATGAATACATTTATTTTATCTTAATTTGGCACATC-AAAAGTATTTAATTTTATTTTATG s bosTau2.chr23 1146432 472 + 41602928 AATTTAAAAATCACTCTTTGGCAAGTTCCTTCGATGACAGCTTCCTCTTTCTCTTCGTGTTCTCAATATATTCCACAC-TGCTGTGCTATGAATCATCTTCTCAACAGTCTTGCCGCCTGCTGTAGATATTGTATCTCCTCTCTGAAACCTGAAATGCCTTAGGTTTATAGATGAATCCGATCACCACCTTTGCCATCTGATTTTAACACACTCAAGTGACTTACTCTACTGGCCtttatataatttatataacatattaattatataaaGGAACAAAATCAAAGCATTTCATGGATATTAATATTGTGAAGATTTGTATTTTTTATCTAACTTACACCATTTGTAGAATAAAATGAGGAGCATTACCTCCATGAAACATGAGAGGACAAATGATCTGTTCATGATTTTAGGGAAGAAGACATTTATTTGTTCCTAATCCAGCCTGTAGAAAAATATTTCCTTTTATTTTATG a score=11841 s mm7.chr9_random 3567099 364 + 9745104 agtctcggtgagttcatatgAAAACATACTCTTTTTAAAGAGAGAAATTAAGGAGTAGATCCTTACTGTTATGTGCTCATATTAACGTAGAAGAGAGCTCTCATAACTGGCAGGCATTGGTGATATTAAGCAGGCCTGAGGGCTATGAAGTGTTGAGCGTGCTCATGTGGAGCAACAGGCCACAGGAATGCAAATCACCCACAAAGCCAAGAGTGGAGCTAGCAGGTGGCTTCATCCATTCAGCTGATGTCAAAACACTTATG---CCCATGCTCTTAACATCTGGAAAGACCCATTAATGCTTTTAATTAAGTAGAAGACAGATCATACAGTGTTCCTTAATATAAGAAAACCACAGTAACAAAAG s bosTau2.chr23 1146905 358 + 41602928 AGCCTCGATGAA-----GTAAAAACAT-CATATTCCAAGCAAAGAAATCGTGGCAGGGGCCCTCATTCTTGAGAACTGATGTTAATACAGAAGAGAGGCTCCCTGGCTGGAAGGCAGCCATGATGCTAACCAGGCCAGGGGGCTGGGAGGTGGTGAGAGGGGTCCTGCAGGG-AGCAGGCCACAGGAACGCAAACCTCCCGAGCAGCCAGGAGTGGGGCCAGCAGGTGGCCTTGCCGGAGCATCCTATGCCCACCCACTTCTGGGCTCCAGCTCCGGAACACCTGGAAGGCCTC--TGGTGCTTCTCACTAAGGAGAATGCAGGCCACACACTGTTCCTTCCTATGAGAAAATCACCATCAAAATAG a score=6172 s mm7.chr9_random 3567518 185 + 9745104 TCACTTTAG-TTATATTGTACAGAGGTTTTACTTTC--AGATTTTCCATACATCATTTCAATATTTTATGGAAAATATTTCTTTGACTTTTTG--------ATGATTGACCAA-ATTTTTATAAAGAGAAAAACGTTTTTTT--AACTTTCCTATGATTAACATTTGATACTTTTAAAATATTTCCATTATAAGAACTT s bosTau2.chr23 1147523 199 + 41602928 tCACTTCACCTTAGATTGCGTGCTAGTTTTACTCTCTTGTAGTGTCCATATATTATTTCAGCATTCTACAAAATGCATTTTTTTTTTTTTTTGGTATTTTCATGACCGACCAACACATTCATAAGGGAAGAAACGTGTTCTTCCAGTTCTTTTATGATTAATATTTTGTACTTTTGAGATATTTCTGTGTGAAGAAATT a score=15087 s mm7.chr9_random 3572883 1454 + 9745104 AACATAGAAGAAACAGTGGTGAAATGAAAAATAGAA-AAGGGAATATTCCCACCATGTGGGAATTTGGATCCAGGCA-GAAAATACAGCTTCCTGTTGTCT-TCTCGATGGTTTTGTTGAATACATAAAAAACTATTCTCATTCTTTGATATTTGTTTGTCTTGCTCTCCTTTCTTTTTCCATTTATACTTAAAGTAGGT-----TTCACTCACTTTAGCCAATGAGGATCATAAACAGATTTAAATAACT-CTATTCTGAATTATAT-------------------TGTCCTTA-------------------------------------------------GCACACACAGT---------------------------------------------------------------TTCTCTCAATTTTACCTCCTCTCTTTGTTGTATATTTGTAAAAGGAACTGAATGTGTAGAAGTCTCACTGGCTGCTATTGGAGTTAAAGCCATTATAATATCAGATGCCATCTGTACAGTCCATCAGGTAGGTTAGCAGGAATTCCAGGAATGACAGTCTGTGGGTGTAGA-CACTATTTCTGACTTCTAGTCCTGAGTTTTCAAAGTTG-----CTTGATCTTGAATATTAAATATAACATTCAGAGACAATAGTATCAATATTCAAAACGATGTCTATATTTTGGAGTCAGTATTATTTCCTTCACACCAAATAAACTATTAATGTATTAATTGTAGTATATACCAATGTTTGATTGGTATATAAGTTTCTTTGCAATAATATAAAGTCCTGTTTATCTACTGCTGCCATCCAACTATAGctgaagacatttttcattatttcactgaagaaatgtgatggaga--tagta----gaggtcagatattctgctcaacatctgataaaacaca------gcactcacatgcctttctcgatgacaaagaatgacaaaattatctagccctacatatctatagagcaaa---tggggaaaccTGCAAATGGCACATGAATCTGCCCATTGATTC-----ACTGATTGCAGCTG----CTTGTCCTTTGTAATGGGATAGAGTAGAG--ACATTACTGCTGGGTTTGAGTC--TTAGGCTCTG------------------------TTTATGATGTCTTAGAACACAGGCTTCACAATTGGCCTAT-AATATAACAAATTAGACTGCAGCTTTCTTAATTCCAAATGCATCTCCCTGTTACCTCCCCAAAATTACAACCAAGTAAACTCAATTG-------------------TTCTGTTTCATTCA--TAAAAAAGATAGGTCATAGG----ATGTGCATCTCAATTGTTTCATAGATTATTACACAGAGTATGTGCATTTGAATATAATTGCGTTATCTATCTTAGCTAGCACA-----------TTTCTGCTCTTAAACATTTGTAAACTAGGGTATGA----------TGTTATCATCTCACTGTTATTTTTCTAAGTGCTTTTACAACTTACAGAACTATTTAAAA--TTATCAATA-TTGAGCTACCATTCTAGGT----TCTTCTTCTACAGCTTGCCTTTGCAACTCTTTATTCATTTTTCTACTAATTCTTTGCTAACTTATATGAATTCTTATAATTTTCTAGAACtttttcctttaatttaatttatttatttttat s bosTau2.chr23 1161448 1636 + 41602928 AATTTATGAGAAGCAAGGATGACA---AAGTTAGAACAAGGGTGTGTTGACATCATTTGGGTTTCTGGATCCAGCTGCGTAAATTCAGCTCCCCATTTTCCCTCCCTGCAATTTTATTAAATATACAAATATGT-CACTTATACTTTGTT-TTTGTTTATTTCATTTGCTTTTGTTTTTTTCTATGTAGATTTAGTGGGTAATTTTTTAATCATTTGAATCAAATTGG--TATAAAGAGATTAATATAATGGCTATTATGGATTACATAGCTATGaattcactccagtgttcttgcgggagaatcccagggatgggggagcctggtgggctgccatctatggggtcgcacagagtcggacacgactgaagcgacttagcagcagcagcAGCAgctatgaattctcagtgcataaacctttgtcctaatttcttcctatttccttattatagattcctagagggaactgAATATATCAAAATCTTACTGGCTATTGCTGCAGTTAAAAGAACCATGACATC----GTTATCCTGGAGACCAGCCAGCCATAAAGGCAGGCTTCGAAAGAGTGACCATATGTGGGTGTGTTTCACCATTTCAATATTCAGGTCCTCAGTTTCAAAAGTCAAGAAATTGAATTTTTATTAGTGAATACAAGGTTCAGAGAGAATGATACCAGCCTCAAGTAGAAATGCCAGTTGATGGAATCAGGACTATTACCTTCATGTCAAATGAAATATTCAAG---------------------GCATTTGATGAGTGCA----GCTCTCTACA-----GAGGAGTTCt-tttaccttcctgggccat-tacctaagcctgaagaca-ttttaattctcacaacagagggctactactaacatctagtaaggcgagaccaggaatgcagctaagcatcctacattgcataagatgtacccccacaTTCCTGCCT--ATGATAAACAATG--------ATTCAGCCCCAAA-ATCCAAGGAGCGAAGATTTTAAAACTCTGCAATAGAGGCACACATTAGTCCACTGATGCAAGCAATTCATCCCAACCGACCCTCTGTCTTCTTTCACAGGAAGTACTGGAGGTACATTAATACTTTTTTTTTTTCCTTTATGTTCCGCATTTCTATCCTCCATGCTGATCATTTATCAACCCTTCATTCAGAAGCCTC-CAACCAGGCTACAAACATAGCTCATTAGATTTTACCTTTCTGGGTCCCAAATATAGTCCATTCCTGTATCCCTAAGATTGTAATCAAGTCAACTTAGCTGGAGTTTTAAGATGTGGTCACTGTGCTTTACTAATgtagaaaagctggatcatatgatatatatatatttcagcttttgtagaaactgtcaaattgtaccagttactttccttctgacagagttttcttccttaaccaaaccaatatttggcatttccagactttaaatgtgtgtcaatctgcatataaaatactactgcattaccatttaatgaacattttcctgaattct------------agggcaattgagaattttgtcaatagtttattaaccattCTGGCTATAATATTCTTCACTCACTTCTCTATTAGCTTTTTTTTTTTTTTTTTTGCTGTTTC-TTATTGAGGTACAGAAATTTTCAT-ATTTCCTGGAATCTAATTCTTTTTTCTGTTTTATATATTGTAAT a score=33702 s mm7.chr9_random 3574799 1164 + 9745104 AGTTGTGCTGAAATTATAGTAACTTTTACTGAAGTAACTTTCCCAAAGACCCTT-------CTCATAAATGTTTAAAGAGGAAACTCAAGGGCAAGTTCTTCCTATAGCTAAGTAGAAAAGTGGCAAGTATCCAGTGGCCATGAATAGTATAAGTGGTTAATGCGGATGGT-TGAGAACAAAACCCATCTTTTAAGTCATCGTATTT--CCTTGCTTCTACATCCT-CTGGCATTCATGCATCTTGACCTTA--------ATTTTTTCCAGACATTTCTATAATGAAAATGTAGAGGTTTAGAAAGAAATATTGGGAAGATAAATTCATATGTAAACAATACATCCACAG-ATTGTTACATAG-CTCAAATTAAAACATAAGCAATGTTGCTAGGTATTCTTGCAATCAGAAGATAATGCTTCTGG-GTTTCAGAAGCTAGGGGGTTGTTTACAATAATGATGGCCTCACTAGGCCCAAACCTTAGCATAT------------GGATGTGTAAAAGCCAA-------------------CAAAACAAAT-----------------AAAAGTAAAAAGCGCCAAGA----------------CCAGCAAAACATTCAC---------------------------ATAAAACTCAAGCATATGATTGTATCCTTTAGCTCTTAAGTCACACCTACAT----AAAACATCACTTAACGG-TTTGAAGTTCACTTTACAGCAAAG-TGAGGGATTATGGGAA---ATTAAGTCACTGTGAGCCCTCTCTTTTTTCTTGTAATACACAATAGAGAAAACCTTTTGTATTTAAAAGGAAAAAACAGGAGCTATCATTATGCTTAAAGTTCTAGGTATAAAACTGCCAGAAAACATAGCAG---AATTACACCTGCTGTCTATAAATCTCCTATGATGAAAATAAAGATCAAATGGTTGAT--------AATTTCAGGGAATTCCGATCTTATTATTCCATAAACTTCATTCACATTAAGAATCTTTACTCCCGTTTAAGGCATAATGAGTGTGCT-GTTTTCATATCCAAATGATTACTA----CTTTTAAAAATGCAAACACCCAAACTCTGAAACTTTAGTAATTTTTCCCTCTGTTTTTGTTTTCAACTACTGTGTTAGTACCAAGCCATCATAACATCCTGTTTATTATTGCCTAGGTTAAAAGCTATGAAGCTCTGGACATCTCCATTATGAAAACACATTACTTCATAGCCATACTAAAAGTTTCCTCAGCCTAGACTTTTCCAAAACCTCTTCTCATCC s bosTau2.chr23 1166188 1263 + 41602928 AGTTGCACAGAAATGACAATAA-TTTTACCAAAGTAAATTTTCCAGATTTCCTTTCCCACCCACATAAATATATAAAGAGGAAGCTTCTGGGCCAGTTCTTCCTACTGCAAAGTAGAAAGATGGCAGGTCTCCAATGTGTGTGAATAGGGTAAGTGGTAAGCCTGAATGATGTAGGGACAAAATCAACTCTTGAAGTCATCATATTTTTCATGGCCTACACATCTTTCTGGCATCCACACATCTTGATTTCATTTTAACCATTTTTTAAAGCCATCTACAAAATAAAATTG----------------------AGAAAAATAAATCCAGATATAAACAGTACGTCTGTAGGATTGTTATAGAGGCTCTAATTATAATGAAGGCAATGTT-TTAAGCTTTCTTGCATTATGAGCATAATGCTCCCAGTATTTCAGAAGCCAGGGGTATATTTATAATGGTCTTGGCCTCACTATGTCAAATGCTTAACATGTAAACTGAAGCCAGAAAATCGAGGATCCAAATGACACCAAGTAGAATGCCAACACAAGTTTCTTTTCCATTCCCTAAAATGTAAGAAG-ACTAAGAATTTAGGGAGGTGAGTCCAGCTAAAAATACGCTTACCTTTCAATCTTCAAATGTGTGAAATAAAAAACAAGCATTTGGT------CTCTATTTCTTGATTTAAATCTGCATTAAAAAAGCACAGTTGAACTTCTTTGAAAATGATTATATGGCAAAGAGGAAGCATTACAAGAAGAAATTAAGCCAAAAGAAGACTTCACCTCTTTCTTGCAAGATACGATAGAGGAACCTTCCTGGTTTCAGAA--AAAGAAAAGAAACTGCAATTATATTAAAAGGTGTAAAGATAAAAGTGCCAGAGCACAAAATGCTGCAATTATACCTGCTATCTGTAAATCTCAAGTGGTGAAGGGGTGAAATGCATGGATGATTGACAGTAAACACTGAGAAACTGTGGTCT-GTTACTGAGTAAAATTAGCTTAC--TGGGAACCTTTCTTTCCACATAAATTGTAATGAGAGTATTTGTTTTCATACCTACGTGGT-ATTAGGCCATTTCACAAGCTCAAACACCCAAACTCTGGACCTTGAGCTATTTTTTCTTTTGTTTTCCATTTCAACTGTTGATTTAGTACCAAACCCCCACTGCTGTCTGTTTATTATTACCCAGGTGAAAAGCTATGAAGCTCTGAGTATTTCCTTTAT--AAATATCTCTCTTCCTAATAATACTAAAAGTTTCCTTAGCCTGGATAGTTCCAACGTATCTTCTAATCC a score=5521 s mm7.chr9_random 3576915 292 + 9745104 CCTGTTCTCATGAAAGACATTTGTGAACTTTTACAA--GGTACCACATTTCATTGGACTTAA----GTCAAAAAATTTTACAAAGGGA----TCTTTGAAAGAGAGATTAAAACT---AAATTATAGAATGAACAATGAAGAGAGTCGCATAACCAAATGTACTCACTATCATGTAAACAATTAGGAGA-----GTTAAAAATATATACTAAAGTGACCTTTTAAGTACTT--------------------GATATATTTAAATTTTCTTCTAGAAATTTCGTTCATTGTATAAATATTTACTGAATTTATTGAATGCCTGCTCTGTGCA s bosTau2.chr23 1178727 318 + 41602928 CTTTTTCTCAAGCTGTATACTTATACCCTTTTTCAAAAGATTCCATATGTCACTGGACTTAATAAAATCAAAGACATCCTCATGGAGAAAAGTCCTTGGAAGAGTGATATAAATTTGTGAATAACAGAATGAACAGT----AGAATCTTGTGCCCATATATATTCATTTTC-TGTCAACAATTACAAAAAATTTGTGAAAAAAAT----TCAAATGGTTTTCTAATTGCCTTGACCTCTTTCTCAAGTCACGCTGAATTGATATTTGCGTATAAA---TTTGTGAAAAAATTCAACATTTGTTGAATTTATTGAGTGCTTGTTGTATGCA a score=27944 s mm7.chr9_random 3583985 888 + 9745104 ATATATGAATATCATTGACAACTTAAACATTTAAGATTTCCAGTGAATTTTCAATCGTTATAATCCCTTCAAGCATTAGTCTGATCT-ACAAGAGGCAGCTCTTAAAT---AAATTTTTTGGTAAAAAAAAACAAAACAAATTAATGGTAAAAGGGTCAGAATG---TCTCACTAATGATAAGGATTCAAACAACGGCACA----CTATTAAAACTATGACCCA----------GCTTCCCTGACATTTAGAGTCAGGACTTGATGCTTGCAAAAAGGGCAATGATGATTCACATCCAGTAGATCCGTTTACTTTCAGCCAATTATAATGACTGTCACAGGAAGATTATTTACACTGCTAC-ACGACCCTCAGGCATTGGCACCAAGTGAATGTGCAAACCGGGACCCAAATGATAGCTTTGCTAAATCCCCAGTGTTGTCAGATAGCAAAGTACACTGTCCCAGCCCGACTTCCT-GGAATAACCTTTGATCTTCACATCAACAGTAAAAATAATTACTAACTTTGGCCAAGCCAGGATTAGTCATTTC--TTGTGAGTAGCTAGCTGCACAGCTGGGGCCAGACGTTCAGATCTCCTTTAACAGAACCTCGCTGACAGTCCTCCTGCCTGTATATCA-GCTTGTCATTCGTTTATCAGGGGCCAAACATTTTTC-TTTGTAAATGTGTGTAAAACAGTCTCAGAATGTCAAACAATAACAAAGCAAGGCCCAGCATGCCGAGGTTCACAGAAAGGAAATTTCCCATCTGTGCACATCAAACAGTAGCATGGGCAGAAACGTAAAGCCAAAAGCTGCACGTGCACTCATATGTTAGTATACCTTCTCAGTAACCCATCCAAGAAAAGAAGAAGACTATTCAAGGAACACGCCCAATGTTTCAGCCAGAAGAAAA s bosTau2.chr23 1183062 873 + 41602928 ATGTAAAAATAATACTGAACACTTACATTTTAAGGATTTCTTAGGAATTT---ATCAGGATGAT------------TAGACTGTTCTCACCTGTGCAAGTCATTGAAAGTAAGAGCTTTTGATGTAAAATGATC-------TTAATGAGGAGAAGGTCAAAAAAAGTTTTGAATAGGAGCAAGGATTCAGAGCGTTACATATTTTCTTTTAAAAGTGGGATGCAATTGCTGTAAGTTTTTCTAACATTTGGGGTCAGGATGCGAGGCCAGGCAAAAGGGCAAAGATGATTCAAGACCAGTAGATTCATTTACTTTGAGCCAATTATACTGAATATCACATCAAGGCTGTTTACATTTCTGCTGTCATCCATATGCATTAGCGCCAGGTTAA-GTGCAAGCCGTGAGCCCCACCATAGCTTCA-TAAATCTCCACTGTCGTTAGATAGCAAAGTCCAACGCCCTAGCCTTACTTCCTGGGAATAACCTTTGATCTTCAGATCAACAGTAAAAATAATTACTGGCAGTGGCCAGAGCAGGATTAGTCATTTTGGTTCTGAG----GAGCGGCACAGCTGGAGACAGATGTGTGGGTCTCCTGCTG-GGATCCTGAAGCATCTTCCCCGAGCGTTTATATCATGCTCGTCATTCGTTTATCAGAGGCCAAATGTTTCTCTTTTGTAAACGTGTGTAAAACATTCTCAGAATTTCAAACAATAACAAATCGGGGTTGAACGTGGCCAAAAT-GCAAAAAGGAAATCTCCCATCTGTACAAATCAAACTGTTGTA-------GAAGATAAAAACTAAAACAATACACACATAC-TATTTTGATATAGATT-TCAATAACtttttttaataaaaattaa---tattCAGAGAAAATGCCAAAAGTTTAAATAAGAAGAACA a score=2953 s mm7.chr9_random 3584899 236 + 9745104 TGGAAGTAGTTTGTAAAATGTTTTAGTTCACATTTTTTATTATTTTTCATTTCTATGTTGTAGTAGTATTGTTA----TTTTAGG-AAAATAACACACATCA--CAAATATTACATATGAAATTTCATACCTGTAGTCGATA-TTTGAAATTCTTTTTATCTAACTAGAAACCTTGGATTGTTCAATTCGTATCATTTAGAAATCAGACTCTCT----------GCTCAGGCCTGTGCATGGAGAATACAAGCG s bosTau2.chr23 1183957 237 + 41602928 TGAAATTAATTTTT---ATAGTTAAATTGACTTTTCTT----CTTTTCCTTGTTTTGTCATGTCATTATCAATATCGCTTTTAGGAAAAATAATCTACATGAATAAAATATCCCATGCAAAATTTTATATTTATTGTCAATAGCCTTATGTGTCATTTATTCAGAGATTattctt---ttattcaagaaatattttttagag-------tctcttccatgctgggcacagttctagacattggtgatacaagtg a score=6518 s mm7.chr9_random 3586049 307 + 9745104 TTTTTTTTTACTAAAAAGAAAGTGAATATGATTAAAATATATTGTTTGAAATTCTCAAAGAATAAAATGTTCTTAGATATATAACAAGAGGAGAGTTTTCAGGTTAGATTTCACAATTGCCAAGAGCCTCCTGAAGCCGATTTTTACATTCAGTTGAGTGTGTATCCTAGATGGT--------------CTGCTTTTATTC-GGGTGTCACA-----------GGAATACGTATGGAAC------------CCAATGTCCCTGTTCCTGTTG----CTAGAGCTTATCCCGG--ACCTGCTTATTGGACAACTGA-CATCCAGGTGACTGGACTGACTTAATTTTTTAAACT s bosTau2.chr23 1185025 345 + 41602928 TCTTCTTGTTCTGAAAAAGAAAT--ACATTATCCAGCCACACTTTTTTCTATCTCCTTAGGTTATAGT-----CAAACACAAGGCGATAAAGGAAATTTCAGGTTAGATTTCACAACTGTCAAAAACCTCTTGGGGCTGATTTTTATATTTTATTGAATTTGGCTCCTGGACAGTCTGATTTGCCAGGACTGCCTTTACTCTGGGTGTCACACAGACACAGACTAAATACATTTGCAGCACTTCAGAAGCTCCATTGTTTTGATTCTGATTGTTCACTAGGGCTTATCCCCACTACTTCCTCACTTGAGAAATGACCATCCAGAGGTCACACCTTacttgaaatgccaaact a score=2590 s mm7.chr9_random 3586381 234 + 9745104 AGATTAATGGTACTTTATTAAAGAATGTAGTGACAGAAT---------TTTACCATTCTAAAATTGA-------------ATTAAAACCTGTTATGGGATTTGTAAA---TATTAGAAAAATGAACCAAAACCCAGACACACATG-AGCCCTATTAGCCAGGAA--AAGATAGTCAA-ATATTTATG--------------TTTGCTTTATA-------GATACTAAGCCTTTAAAATTCATACTAACTCCTCTTTTGTTATCTCTTCCCATTGTTTATTTTGA s bosTau2.chr23 1185420 278 + 41602928 AAATGAATAGCATTTTACTAAAGAATTCATTAAATTAATATATTTTCATTTAGCTTCTCAAAGCTAATGACTGTATGTTGATTAAAATCCAAGACATGGCCTGTAAAAACAATTAGAaaagtacaaagaa----agtctcatatgtaattccatgacccggagatgaccacagttaatattttgatgACCACAGTTGATCTTTTGGTTTCTACTTCCCTGACGTTAGACTTTTTAA--TTCTACCTACTTTTTTTTTATTAACTGTTTGCTTTGTTTGTTTTAA a score=5089 s mm7.chr9_random 3605945 401 + 9745104 ATATGTCCTCATATTTAAAAGAAA-----GCACACTA----CTTAGTTATAGTTTTTTCTAAAAGACAAACTTTGTTCAGATTGTAGTCATACATGTCAGGGACAAAA------AAAAAGATAAATTGCTTCAATATAATCATATATTCTTGCCAAAAATGTTCTTTAAGTTGCTGAATTTATGTTTTGAAGTTGGGTAAAAC-ATTGACTTGAACGCATT----ATAT----------ATCATG----------GTTGTTCCACACATGACTACTAAATCATATTTGCTAACCAGGTACATTTGCCCTCTTCCAACTGACCCTATTTTTTTTTCCTATTAGTCTATTAATTCTTGTGAGAAATTTGCTAATACTTTTACAGTGAAAAGGGTACATTCGACCTTTATTAATATAAAAACTGTCTTATTTATTTAAAGTTTT s bosTau2.chr23 1229252 378 + 41602928 ATATGTCCTTATATTTAAAAGAAAAGGAGGCAATCTATCCCCACAGCTGCAATCTTTCT--AAGGACATAGTCTCTTCTTTATTTACTTGCACATCTCAAAGAAGAAAGACAAGGAAGAGAGAAATTCTTCCAATAT-------TATTATCACCAAA---GTGATTTGACTTAGGAACCTTATTTTTTAGAGTTGCTTGAAatgatcaattttcaaagattttccatattttctggaaaatcatgtatattttttaatgttctgtacatgttcattagttaatgtttgttaattgggcatatctgctctagcttcactga------ttatctttcc--tcagtatgtcaattaatcagagagatttgttaaaatttct-cactaaaaagg------------------------------------------tgaagtttt a score=9496 s mm7.chr9_random 3606686 411 + 9745104 ttactataattacccagtttc-ctttagtggatactgttctaatatttgtatgtccctttgtgttatcctcatctttcctgtagttttaaattttaagcatatttctttttaatagcatgtCATGAGCATACTTGTTGAAACAATTATTTAAAATCAACCAAGGCAGCAATGATTGCTTTAGTCTGTTTGCATTAAATGTTATATGATTAT-CTGGACCCCTTTCTGCT------TTGCTTCTGTATCATTTTGCCCCTTAGACACATTTCTTT-----CCTTTCTTTTCCTATTGT-ATTTGTGTGAACTGATTGAATTTTATGACATTGCGAGTACCTCCCATGCTGATATAGAGTGGCTGTTAGAATAATTTAGTT--TGAGACCAATGTCATCCATACCTTGTTTCTACAAATGAAGTGCTCT s bosTau2.chr23 1229766 419 + 41602928 ttggtatgcttatccagttttgctctgatgggtatta-cctgata--catatttactttcattttgctttcaaccttcctgtgttattaagttttaagtgtgcctcctttgaacagactgt----agc-tggttgttgacattattattttaaatccaacctgccaatagtgatctttataggccatttacatttaatattatacaattatgttggatttaattctatcatattattattattatgcaatacttccttttggttatgtttctttttatccctttctctcttttttctcatcttgttgaactgatttcattttaccacattgcaattattccctctactggattagaaTagaggtcagcaaacaatagccaatgagccatatcccactcacaacttgtttttgtaaataaagttttat a score=1334 s mm7.chr9_random 3607132 63 + 9745104 TACCTGCTTTGAAAATAGAGAAGCAAGTTTGAATAGTTATGTCAGAGACACAAAAGCCTAAAA s bosTau2.chr23 1230223 58 + 41602928 tggctactttcacactgcaggagcagaggtgagtggttgc-----aaacacaaagcattaaaa a score=8414 s mm7.chr9_random 3607626 547 + 9745104 TGCCAGTCATTCT-------ATCTCAACTCTATTTTAA-------------------------ATACAATACAATT----GTTCttttt--ttttttttgaggtacatcttttagcaacagacttgcttttaatactaaattttcttttagcttcttgctttatctgccttgaaatgtttttatattg-cctaagatttgggaagata-----attttggctaaattcatacttctaaatgacattt-tttttccttagcaaaatttcgaagacaGGAAGTATGTGTTGACTGATTTCCAATTTGAGTATGATGCTTTGTTTGATGGGCCAAATATTAGCCCAAAA------CTCACTTCA--GTAACCTGAAATAAACACATGATAGGGCATCCTTTGATACATATGAACTTTCAATTCCCCTGTAAACTGCCCTCTCTTCATCTATCTTGCTGTCGTCTTAGGGAAAAATGTCTGCAGATCTAACTCACTAAAC-------------CAGCACATCTAGTAAAGTTTAATTT----------TTTTTCCTTCTTGGACCTATCAGCC--CACTTAAAATATTTCAT----ATAAGATTTTGCTTTCCTCAAA----AAGCATATCATATCT s bosTau2.chr23 1230730 604 + 41602928 TGCTAGACATTtttattctaatct--actccatgttaattattttcttgttcattatatttgtatacattaccattgggggttaattttggttcttcctgaggtaaaacctttagcggtggctttaccattgacggtaaattctaatt-----------tttatttgcctaggaatgtttttcttttgccctaatgttttgttggatacagatagagttgctggatacagacttccaaatgacagctatttatcctgagcaa---tttgaagatagtgactatctgttcactgccttccaagttgagaagccagctTTGATTCATAGGTCTGCTGTTTGCCCCTAAAGCGTCCCCAGTTCACTGCGATATTGATTAAATGGATATTACAACTT-----------TGTTAACTTTAAATTCTTTT-TGACTTTCCATCACTTTATCTGTTTCAATGTTGTCTTCTGGATAATTCTTT-CTTATCTGTCTTTCCACCCACTGTGTTTCCCATAACATATCCCATAAAGTTTAAATTCAGTATTATATTTTTCCTTCATAGAAGTTCTGTTCTTCATTTAAAACATTTTGCTTTAAAAAAAtttttttttggccacaccatcagcatatggaatct a score=2934 s mm7.chr9_random 3610160 269 + 9745104 TAGAATTGAAAGTAAAAGGGCAAAATTTAA--TTTAGGGTTTTACTTTTCTGAAATTTTGTGAT--TTGTAAAGGCTGTGGGTTCTCTTGATTTTCCT--CTCTGAGCGCTTTGCCTTTCAGATG-CCGTTAACGAATAT--------CCTTGTGGCCTGATCTT------CTGAGCCCCCTTGCTCCTTCTATAACAGCCACCTTTCTACCCAAAACAAGTACAGCCTTGC-TTTATACGTAAATAAGAGGAAACACTGCCATCGCTCACAAGTCTTCATACTTTCTCCT s bosTau2.chr23 1232125 267 + 41602928 TAAAGTTGAAACTAAGATG-CAAAGGTTAAAGTGTATGTTTTTCAAAGTCTGAAGTTTCTTTGTACTTTTAACGGCTG-GTATGATCCTGGTTCTCCTGTCTTTGAAATCCCCATCTTTCAAACAACCTTTAACAAGTATGACAACAGACTTG-GAAGTAATCTTGCAAAACTTGGCTCTTTT-----TTTTTTAATTGTTAACTT------------GAATAGAGTGTCACCTTTTTGCCTACATAAGAGTAAATACTGTCAATGTT----ACTTTTCCTACTTTTTCCT a score=16914 s mm7.chr9_random 3610449 794 + 9745104 GATAGAACACAGATGTAGA--------CTCGGTGATGTGTCTGCTTTATCAGCTGCTGTATCTTCACTCTTCACTTC-AAACTTTCCAGCCTGCCTCCCCTCAAACAGGGGGACTCAGAAAGCGTACGAGAACACGTGACTCAAGACGGGATCTGAAAGATAGATTGAGCACTAGAGTGGACAGCTACAAGGTGGTTGCCTGTGTTTGGGAATAAGGATTTCTTCTGCCCTGAGCAACACTGCAGTGGAAGCTAATTATTCATTGTAAATGTCTTGAGAGATCACAGTTGCCAGGCGTAGAGTTGCCAGCAGGCTCTGGCTCGGATTTGATGACGATGATACAGGGAATATGAAGTGATGGTTCTTCGGCTGAAAAATAA-----TTTTGGGTTTTCA-----GTCTGTTTTCTTTAGCTCGATGTAGAA-----TTCTTTAGCCTTGGTTTCTTTTATTTAAAAAAAAAACTTGAGTATTTATGATTTATGTCCCCTTATT-TCCAAACTGGATAAAGCACTTTCACAAAGCAGAACACGTGTAAAGTAGAAACATTTCCAAAGTGCACAAAAAACGCCAGCACCCTAGCTACTTATAAAGACTTAAA----------CCTATTAAAA---ACTAAATTTTT---GTCTCTGGTAATAGCTAGAATATTACTAAGATAATATTAAGAACTT---AGGACAATTATTTGAGACTA----TCCTGAGTACACACACATATAATTTTTGGAAGATGCGAAATCAGTGTCACTTAGAGTGTTTCTTTGTATGTACACACGTGTGTGCCCCTGTGTTTTCAGGTATGTATGAGCACACATACAAgt s bosTau2.chr23 1232413 757 + 41602928 GATAAAATACAGATGTATAGATAAATACGTAGTGATATATATGCTTCATCAACAAAGGCATCTTCACTTGTAACTTTGAAAAGCACCAG---GCCCCTCCCCCAAAAATGCAAAAGAAAGAACACAGAAAAGCAGGTAATCTGAGAGCCAGATTGCATGATCGACCGCACAACTGACTGAATTGTTATGAGACAGTGACTTGTGTTTGGGAATGAGGATTTCTTCTGCCTTGAGTGAAGCTACACTATAAGCTACCTATTTATTGTAAATGTCTTGAGAGATGACATTTGCAGGCTATATAGTTGCCCCTAGATGCTGGTTTAGATTCAACACTGGTGATACAGGAATTATTAAATGACAGTTCTTTACTTGAGAAAAAAAATGTTTTTGCATTTTCTTTTCTGTGTGTGTTTTGCTCTTCAATACAGACAAACTTATTTTTGCCTTAGTTTT------------AAAAACCATGAGTATTTGTCATTTTTGCCCTTCTAGTATCAAAAATGATTAGGACCACTTTACAAAGCAGAA-------AAATTAGAAACATACCAA-------CAGAAAAAGTCAATGCA-TAACTAGCCAAAAAGACCTGAGTAGTTTGGATCCTGTTAAAACAGACCAAATTATTCTGATTTCTTGTAATAGTTTGAGTATT--CAAAGTAATACTAAGCATTTTCTCTAACAGTTATTTGAAAATAAAGTGACTGACCATATGCGCAGATA------------------------------------------TtatatatatatatatatatgcatacatatTTT-----------GAGAAAATATAAAAAT a score=66260 s mm7.chr9_random 3611485 2812 + 9745104 ATTCTCACCCTCCTTATTTCTTGTTCTACACGAACAAGAAAAAAAATTAACTGTTTTCCCACTCTTAATTATACTTACTATTTTAAATATGTCTTTAACGTTTGGACAGATTTTTTTTTTAAAGCTATAAATCAGAGACTGGTGTTTTGTCCACTTATTAGTTGAGTGAACTATGAGAAGTACAAGGATCG---TCATCAACTGAAAGCAATTCATGACCTATTATAATTAAGAAACATTTTACATCTGATAA----ATATTTTAGTTCAGGATGCATTCCCattttattttatttttttttaGTAAAGAACTATGCCACACACATACACACACAAATCACAACAGAGATTGACATTATGAGTTTAATAAATTTTAAA-TGTAAACATACATCCAAGTAGTACATTTTAAGAATAATATAATAGAATTCTATTTCTTAATCTCTAGCCTTATCCTCATTGATACACTATTAAGTTATTAACTAAAAATATATTACTTAGTGCATCCCCCAATATCATCAATATCATAGTTTCTATATTGTAAACTGTGTTTTAAAACAACATTGTAAAATATCTGAATTACAAACAAGCC-ACAATGTCTGAAAGTTAGTAAGGATG-GATTCTTGCTTGAAAGCTACAAGCGGGGAGTTGG-GAATGGCGCTCCATGAATATTTTCAGTTGATTGCTA-CAAGCCTCACCACGGAGCTCACAAAAAGTTGGAAGACTA------GAGCCCCACTCCTCAGAAAGTCAGCGTGGGCTGGAGAAAGACCTTAGTAACCAGTCACCCTTCCAACAGAGATGAAATAAATAAACATCAGAGAGAAAAGCATGcgcgcacacacacacacacacacacacacacacacacgcacgcacgcacgcacgcacgcacgcacgcacgcacCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCAGAGGAAGTTTTCCAAAATCCCTTTGTAAAATTGGGGGTTTTCACTGAGTTTTTTCCCAAAAAATGTGAAAAACAGGATTTAGCTGTTTT---AAAATGGTGGTTCTGTCAAAGCAACTCTGGGAATTT------TTTTTTTCAGTTTAATGACAATATTCTCACACTGAATAAAATCCCTTATATCACATCAGCTGGAAATGTCTATTATAAAGGCAAGTGACAGCAAGACACTGTGTCGACGTGATGGGTTCCAGCACATTTTATGCATGAAATGACTCTTGTCTGTAGGGAATGGAATGGAGTACATGTGATTATTTCCTTACTTTGGGTTAAGTTTTAAACAAGAAAGAAAGAAAAAACCCACTGTAGCAGTAGTGTTCTAGATAATGGCTGGGC-TGATTTATTTGAGGTA-----------------CTTTTTTGTGTCAGTTTGGAAACAGGTGGAAGTAGACTCAAG-----------------CCTGAAGCTTTCATCTTCTTGCAaaaacagaacaaaagaaaaacaaacaaaacaaaacaaaaGAGAAAAAATCTGCCGGTCAGAAGCAAGAGGCAGCATGTTTCTAGAGGTCCACCAATTCCATTAAAGGGAACAGTTAAAAGAATTACA--AAGTCTTCCAGCTTCTGTGTCTTGCCTACTGATCACTAACTCAAATCCAGTTCCACATTTTACTTTAGCCAAAGAAGCACAAATGGT-----AAACAATGTGGTTTTTAAAA------TTTTGGTTGTTAGTTACTTT-----ATTTC--------------TAGATATCCTATCTTAGTTTTAGTTAGTGCAATATG-TCAGATATATTCATTTCCCTCCAACATTA---AGCTGTCAAAGGAATTCTACTTAATATCAGAAAGTTAT-------TTATATTAGCCTTGGGAAAAATGTTAGCATAGTGTTAAACTGGACCCACCACACCCCAACAAAAGTTAGAATAGG-AATCTATTATATAATAGGGGGATCTTTAACAGGTTTTACTGGTAAGGTATCCA--AAAGAGAATACATAATTTTAAATAAATAAGAAGTG--TATATACATGATATCATACATAG-----AGAGATGAAATGACCCAGGTTGATTTTAGGAAATTCCCCATTCCCCTG--------CTTTTTATTGTGGTCATAAACATA-GCACAGATCTGTTTTGTTATTATCACAGGCACTTCCAGCTAGTGGCAGCCACACGAACGTACTACCATATTTCTGTACTTTTTCAAAATGACATTGGAGCTGTCATCAAAATACAGGACCGAGATGGCATTTAGTTTGGTTGGAGCGCAGCAAGGCTTGGGAACATGGTCTGGAAACATCAGGTGTACCTGGCAAAGAAAGAAGGGGGAAAAGAAAGAGATATGTCTGTTAGCAAAGTGCAGTGAACATTTATTTCATTGCCATCTTTAAG--AATATGATGTTTATATCACAACGCTTTGATGA--GGGAACTC------GTCGCCTGACTCC---TTTATACCCTGTTGATAACTGGG-TGGGGGCTGATTGGCAGG---GCACATTCTCGATCAACAGTCACTAAGAATGAAACCCAACAGTTCTAAGTAAGTGTGGGTGTGGACAGTTCTAAGTAAGTGTGGGGGTGGGGGCTTGTAATACAGTTCATCAAATAAGGCAAGCTCTGGAAGGAGTATATTTTTTTTCAGAATTTTTCTTAGAGAAAAG--CATAACATTTTGTATTGCCCTGCTTGTAATTGACCCAGTCTCTTCTACACACACTCCTAGAGTAACAGAGGCTGTAGGCTC-AAGTCAGTGAAGACA---CACTTGAACTTCAGAAAGTTCTAAGTCTGCAAAATATT-GTAATAGGATAGTTAAACGATACCTCACAGACGTTGTGCCAACTTTTATTTTTCCACGGGAAAGATAAGCTAAAAACCACAATGAAATAAAATCTATATTTGttttgcct s bosTau2.chr23 1233220 2619 + 41602928 ATTCCCACCCTAATCATTTATTTTT-------------------------------------------------TTGCTATTTAAAAATTTTCCGTATTGTTGGAACAGATTAAGA----AAATATTTAACTCATGGATGGTTTCTTTGCTCATTTAATAGT-GAGTTACTTATCAACAACACAAAAACTAGTTTTGGCGATTAAAATCA-------------TGTAATCCACAAACATTTTAGATCTGATATGCTTAGAGTCTCATTTAGGACATACTTATATTTTGTATC----CCTCTTAAAAAAATAAAAAGCCAAAT---------CAAGAACCACAATAGAAACTAGCATCACAAGtttaatatattttaaaacatagaaatatatttaaaCAGCACATTTAAAGAATAATATAATAGACTTTCATTTCTTATTCT-------TAT----AATGGTATACCATTAATTCA-------AAAATATATTACTTAATGTA-CCCCCAATAGAGTTATTATCAAGTTTACTTTAAGATAATCTGTATTTTAAAACAACATTGCAATATTCCTGAATCATGAACAAACCCATAACATTTTTAAGCTATTTTTGATACAAGTTTTACTTAAAAAGTCCAAAAGGGTGATTAATAAATGATGCTTTATGAGTATTTTAGATGAACTGTAAATAATCCTAGCTGTGGAGCCCACATAAA--TAGCAACTTATGCACTAAATGTCATTCTTCCAAAAGTCAG--TGGGTTAAAGACAAGCCTTAAAAGGCAGAGAGAGAAACAG-AGAGAGAAAATAAATTAATTTCAGAGGGAAGA------------------------ACACACAGGCACATACACGCAA-------------------------------------------------CAGAACCTTCCCACTTGGAATTATTTGTGCTTGGAGGAAGGTTTACAAAATCCCCCTCCAAAAT--AAGGTTTTCAATGAGCTCATTCTCCAAGA-TATGAAAAATGGATTTCAGCTGTTCTTTCGAAATGGCAATTCTGTCAAAGCCATTCTGGGATTTGGGGTAATTTCCTCCAGTTGAGTTTCAGTGCTTTTACCCTAAATAAAATCCCTTGCATCACATCAATCAGCAAACTCAGTTATAAAAGAGAGCTACAGAAAGCGGCTCTGTCGGT-CGCTTTGCTCGGGTATATTTTATGCATGCAGTGACTCTCATCTGTGGGGAGGGGAGGGGAGCACGTGTAAATGTTTCTTTATTTTGGACTGTTTTTAAATCTAAAAAAAAAAACAAAAC--ACTGCAGTAGTAGTGTTCTAGATAATAGGCAGACATGATTTATTTGAGGTAAGAAGGTTGTACTACGCTTTTTTAGTGTTAACTTGGAAAATTATGGACACAGGCTCAAGTCTGTCTCCACAGAATTCCTGAAGCTTTGAGCTCTTTGCAAAATCT---------------------------ACAA---------------CCGGT--GAGCCAAGAAGGAACGCTTTCCTACAGCTAAACCAATTCTGTTCAAGCAAACAGTTACAACAATTACGTGCAATCTTTCAGCTTCTGTGTTCTGC-TCCCGTTTATTTACTCAAATCGAGCTCAACATTTCACTTTATCTAATGAAGCAGAAACTCTCAAAGAAAAATTGTGTTCCTCCAAGCATTTTTTTTGGGGGCTGGTTATTTTTTTAAGTTTCATTCTAAATATCAATAAATATCCTATC--AGTTTACATTGGCACAGCATAACCAAATGCATTCAGCTTCCTTTAACAATACTTAACAGTCAAAGGAGTTCTGTCTAATTTCAGAAAATCGTATAAAAATTACATTA---------AAAATATT------GAATTGAATTGGACTCAGCATATCCTATTAAAAATTAGACTGGGCAATTTTTTGCATAATGAAGTGAGCTAAAATACATTTTACTGCAAAGGCAGCCACAAAAGAGAATATATACCTTTAAATAAATAA-AAGTGACTATATACATGCTCTTGTACATAGGTTACAGAGATGAAATGAGCCAGACTAATTTTATTAAATTCCCCTTTTATCCGAAAGGATATTTTTTATTGTAGTCATAAACCTCCATACAGATCTTTTTTCTTATTACCATTATTATGCACTATTAGTGGCAACCACACGAACGCACGACCATATTTCTGTACTTTTTCAAAATGACATTGGAGCTGTCATCAAAGTACAACACAGAGATGGCATTTAGTTTGGTTGGCGCGCAGCAAGGCTTTGGTACGTGGTCAGGAAACATCAGGTGAACCTGGT------TGGGTGGGAGGAAGAAAAGGTTTTACTTTTTAAGAA-----ATAAAATAGATGTTTTGTCTGCAGTTTTAAGGTGACATTCTTGTTTTATCAC-------TGACGATCAGGCACTCTCTTAAGTTACCTCCCTCTCTATTTTTGCTCCATGGTGAGGTGAGCTGGGAGCTGGTAGTGAAGGATGTGTATCCTTAAGTATTAA-CACCTAGACT-CGACCCACTGGTTCTAATTACATGT-------------------------------TGGGGCTTTGAAAAACATTCTACCAAGGAAGGAAAACTCTCTCTATGGAATATTCAGT---GGAAATTTTCCTGGAGGAAAGAACATGGTAACTAGGACTGGGCTGCTTTTAGTTAAAACGGCCACTTCTAGGTACTTCATGAGAAACACGTAAGTTACGAATGCAAAATCCACAAAGCCACAGCACTCG-ACTGTAGAAAGATCTGGATCTAAGAATTATTCGTAAAAGGATAACTAAACAATAAATCA---ACGC-------ATTTTTA------------------------------ACAATAAAATTAAAAGCATGCAAATTCTGCAT a score=27674 s mm7.chr9_random 3614619 1149 + 9745104 CTAGTCCTTGTTTTAGAGCAATAAGTTCAACTCCT------------TTTCAGCAGACTG----GAGTTTAACATTGTTTTCCTTTCCCTACACACTGCGCAGAAAACTGCCAAAATGCAAGCTG-----AAACTGAAGCCCGAGACCCAGATAGTTCACAAATTGAATATCCAT---------TCTCCTTA-AGAGATTGAAAACGTAGCCG---TGTGGCAAAGTGGAATGCTTAAATACAGGCTCGGGGCTCGTTTTGATCACACTGG-AAGTTTGCCTGTACGTTATAATAATTGAGCTAGAAGTCAGAAGACGGCT-----------CCCACCTACTCTGGCCCTTTCCCCAAAGGAGTTTATGGGAAGTCCCCACGATGAGCCTTAAGGGATCTACAAACGAGCAAACACAACCTCTTAAAGTTTTGGCTTCACAGGGCCCTGGCTGAAATGGTCTAGGAGGCCTACGTGTGAGCAGGAAC-ACAGGACAAATGA-GTGATCCCACATGACCTTAAAATGTCCTAAGGCCTCACAAAACTACAAGTTGGAGAATGTCTCCGGATTTCAGATACAGCTTATATTCCTCTTCAGCTTCTTCTCCTATAACCCT----CCAGGCATGACTGAGAAACCCCAGGCTTCACTGGCCTTGGCAGCCTCAATGAGCAGCAGCTCC-AAACAAGATG-GCTTGTTCTTGAATGGTTCTTCGAATGTATTAGCCACTAACGTGTTCTTCCTTTACAAAGAGCATGCCTGTCTGGTTGCTCCACATGCTTCGCAGAACAAATGTAAAAACATTCACAATACCAGAAACACTAAAGTCAAACTCGAACG-GGAACTT--------------GAGTTTTGTAATGA--TGTGTCTAATATAACAGGGCA-----ATAAGCAAG-----TCTTCCAATTTCACATCAA-GATTT--CTTTTGTTTTTCCTTTAACATCA-CTTCTAGACTATAGCCATAAAAA--GAAAAGACttatttatatattta----taagaaaaaataaaGTAACTAAGGAAAGCAGATA-----ACTTGATGAAAGATTTTTTTATTAGT--ATCCATGCTTAGCCTGAGGGAACCTTGATATATTGAATATGTGTCAAAAGAAGCAG----AATTCTGTTTTCTTACTCAGGCATTATTATTTTACAAATGGAAACAAAAACAGATCAAGAAGTGTTTGAGAAGTCAAGTAGCATTGTTTTATAAGCtgt s bosTau2.chr23 1235894 1200 + 41602928 CCAATACTTGCTTTAAAGCAATGATTTCAACTCTTCTCCCCATAATGTTTTACCAGATTGGCCAGAGTTTAACATCCTTTGACTTGCTTTCTCCCCT----AGACAAGTGCCCAAAATCAAGCTAAGTTCAATCAGAAGAAAGAAGCCTAGATATGTTACAACTTGAATATACATCCCTACCTCTCCCCCTACAAAGCCTGAAAAGGTAGCTGAAACATGG-ACAGTGAAATGCTTAAGTAAAGGATTTGTTCTCATTTTCTGCAAACTGGCACGTTTACCTCTGATCTTCAACAATCAAAGAAGGAGCCAGAACTCAGTTCCCCCTTTCCACCCGCCTACCCCGGCCCTTCCCCCAGAGGAGTTTATGGGAAGTCCCACTGCAGAGTCCTCGGGGATCGACAAA-GAGAAAATACAG-CTCTTAGAATCTTGGCTGCAAACCCTCCTGGCTGAAATGATATAGGAGTCCTGCCTATGGACAGACATGGCAGGAAAAATGAGGTGATCCGACACGGACGTGAAATTTCCTAAGACCTCACAAAGCTGCAAGCTGGATGGT-TCTCCAAATTTCAGAGGCAGCCTGAAGCCCTCCTTGGCTTTATCCTCCTCAACCCCCTCACCCGTGATGGATGGATAACCCCCTGCTTCAAGGATC------ACCTCACCCAGCCATTGTTCTGAAAAAAAATGAGATTGTTCTTCCATCATGTCTCAAACGTGTTCGCCACAAACCTGCTTTCCTTTAACAACAAATGTGCCTGTGTTCTTGTTTCATGTCCGTCACAAAATAAAC-----AGAATGCACAATGCCAGGAAAAA-AAAAAAAAACAGAAACACCGAACTTCCCATGTTCCCTTCAAGTTCTGTGATGACTTATGCTCCACATCCCAGGACAGCGATACAGACGAGGGGCCTGTTCCAAGTCCGTGTCAGCGATTTAAAAAATGTTTGTTTTTAGACGCTGCCTTCTAGACTACAGTCCTAAAAGCTGACAGTATGtaattatatatttatttttaagaaaagaaaaaa-----aaaGAGAG-AGATAGGGGTATTTGACAGAGG--TTTTTCAATAATTCAGCTTTGCAGAGCCTGAGCGAACTTGGATGTGTTAGATGCATATCTAAGGAAACAGCGAAAGCTCT---------CTGAGTCATTG---------AAATGACAGTACAAA-AGCTTAA----TTTCTGGGAAATTAAGTGGCATTTCTCTATAAATAGT a score=35471 s mm7.chr9_random 3617540 1281 + 9745104 ttcttcttcttcttcttcttctccCAGATAC--ATAATCACAGTTCTCATATTAACCCAGACACTAAGTAGCGATTCTATAACATAATCTAGCGCACCTCATAAGAGGCTGCT----GATTTCCAGAGACCATCCCGAGGACACATCA--------GGATGCT------------TAGAGAGGCTGTGTATGTTCAATAGGTGTAGGATAATCAC----AGGTCACTGAGTCAATGTGTTCCTATCTCATGCACAAGAATATGCTGAGGATACTAGAAATTCAATCCTTTCTAAATATCTGAAAGGATGGAAGAAGAAAACAGGGAGGTAATTTTC-CTTTGGGAAAAATAACAGGAAAAAGAGGAAGGGAGGATAGGGAAAAATCCATAGAAATTATTCTATTACGTATATACTATTTTCAGTGACT---GTAATACAAAAGTATATCAAGAACTTGCCTAAAATAATCATATCAAAAGCTCTCAGATGAAGATCA-CGCAGCTGTTATTCAATGTTTCAGTAAAGAGTACTAGTGAATTTCTAGTTTAAAAAC-----TCATCTGGCTAATCAT--CGTGTAGTAAGAAAATCTATGCAGGGCAGCAACATTATTTAATTACTTGAGTTTTCCCAGTTGAATTTGTACCAATTCCGAGAGCAGGATTATTGATTTAAGCCAATCTTAATTTCTT-ACTATACCCATAATTGTTGCTCCAGCTACAAGTTACAAA---GGAATTTAAGAACTTGAGG-------TTGATAATT--AAAT-------TTTCTCTAAAGCAACTCTATACTGTGTTTGTCTTATAAACCATCCTTCATCCCATAAGCATAGAACATACCAGGGTCTGGACTATGGCATGGTTGGTGGCATTCATATGGGCATTAAGTGGAAAAGAACATTCCCCGTCACAATAAAATGCAGCATACCCTTCTGGTGCTATGATCCAGTCCT-GAAATATACAAAAGCAAGAAAAATAATATCATCCAAACGACAGTAAAGACAGATAATTCTTAAGCAGTAATCAAAGATACTCAACCTAA-------------------AAA----------------AGTTTCCTTTCTTAGTCCAACAATTATTCTAAAAGTTCCGCTTCTCCTATATCTTTTCATT-----TTTAGTTGAGATTTTCAACTGAAGTATAAATATTTTCACACAAAAAATGTCCTTTCTAATTTCTCCCAAGAGGTTACTATATAAAAT----TTAGCATACATTAATCATTCAGCATTTGAGAATAAAACTATGATCACAAAATAACATTCTAAATATTGTTTAAACTGGGAATGATTAACTCTGGGGCATTCAAGTGACCCAGAAAATGTGGGGAGAGGATGAA s bosTau2.chr23 1238544 1351 + 41602928 TTATTTGTTCTCTTCCTTCTGTCCTGATTACTTATAGTTGAAATGCTCCTGTGAACCCAATTTTGATGTGG-GGTCACATCACACAGCCTAA-GCATCTTCTA-GAACCTCTTCCTCGTCTGCCAGAGGCCGCTCCCCCATCACATTAAAAGGTACGGATGTTGGAGTCGGACTCTCAAGGGTTTTCCTGAGCTCATTAGATA-AGTACAATCACTGAGAGACCATGAGATTAACATTTCATTATCTCCTTCATAAAAATTAGCCTACATTAGTAGAGATTAAATCACTGTTACATTCCT--AAGTATGGGAGGGAAGAAATGAAGATTAATTTCCACCTTAATGATTATAAATGAAAAA------------GATATCAAAAAA---AAGGAAACAAATCTACT---TGTATTCTACACTGAAGAGCTTCCATGATACCAAAGTATGTTATGGAACATTCTTAAACAAGGAGTTTAAAAGCCATCAGATGAAATTCAGCACAGCTATTATTCAAAGTTTTTGTAATGACTGCTAATGAATGGTTAGGTTAGAAACAGCCCCTGCGTGGTTAATCATATTGTCTACTGAAGAAATCAGTGCAAAATA-CCATTTTGTGTGATTGCTCCAATTTTCCTTGCTGAATCTTTCCTCATTTTGGAATTAGGATT-TTTCTTTAGAGCAGCCTGAATTTCCTGACTATATCCACATTTCTTACTCTGGC-ACAATTTTTACATTAGGAGTTTGAGAAGAGAAGAAAATGCATTTTTAACTCCAAATAGATGCTTTTCTTTAAAGTAACTTTATAAGAAGCTTGCATCATAAACCACTTTCTATTCTACCAAAAGAAAACTTACCAGAGTCTGAACTATGGCATGATTGGTGGCATTCATATGGGCATTGAGTGGAAAAGAACATTCTCCATCACAATAAAATGCAGCATATCCTTCTGGTGCTATAATCCAGTCCTAAAAATGCACGAAAGCAGAAGAAATAATATCACCAACATAAAAGCACAGAAAAACAATTCTTACAGAATACTTAAATAGAATtaatataattcaatataatataatatTAAATTAAATACTCTGGATTGGTTTCTCTTTTTGGTCCAACAATTATTCTAATAAGACAGGCTCCCCCAAAGCCTTTAATTTATGATTAAGCTAAAGTTTACAACAAAAGTATAAATATTTTCACA-AGGAATTGTCCTCTGTAATTTCTCCC-AGAGGTCACTACATAAGATATTCCTAGCCTGTATTAGCCCAT--ATATTCATGAATAAAGCTGCAATCATGAAATAGCGTTCTAAATATTGTTTAAACAGGAAATGATGAACTCTGCAAAGTTCAACTGAACCAGAAA------GGAAAAGAAGAA a score=5511 s mm7.chr9_random 3621384 200 + 9745104 TAAGTCATCCCTACTGTAAGGGTCTTGCAAGCTGATGGAGCTTTACCTTCTGTTTTATCCCCTGTTTTTCCTTTCATCCTCATATTAA-TCTACAGTCTTTTTAGACAAAACTAATTAGAGCAAATTCCTGAATACTGCACATGAAAAATCTTAGGAAGTTAAGAAGT------ATCCAATGATCTCCCCA--------TTCCCAGAGAAACAAA s bosTau2.chr23 1239929 215 + 41602928 TAACTCAGTCCTGCTTTAGAAGCTTGACAACCTCTTAAGGCGCTAAGATTTGTTCCTTGTCCTGTTTTTCTTTCCAATCATGTGTCAACTTTATAGTCTCTTCAGAAGAAATGAGTTGGAGAAAAATCCTAAGCATTGTATACAAAAGATTTTAGGAAGCTAAAACATTGGCACTTCAGATGGTGGCCCTGATTTTTTTTTTCCAGAGATATAAA a score=8329 s mm7.chr9_random 3671675 354 + 9745104 ATTCATGTCTATTTCTGCAGTCACTTCTGAATCACTTGCACTGTTTGGGAAATGCCAGGTTTACAAAAA-ATAAGTTTAGAATAAAACAAAATCTGGCTTCAAATGATCCCAGCGTGTCTGACTGTGATTTCTTTGCTGCTAA-------GAACTCTGTAAGGGCCTGAAGAGGGAATTCCAATATAATGCAATATGAGCG-CTAAAGAGCACACCAAGGGCTGCCGACT------CCCATGGGG---GCACCCCACGTGATGGGGCTGAACCTGCCCTTAAGACATAATT---TGGACACTACCATCTATGTGTATTGCCTGCCCGCCTGGGGCTGGACCTGG-------------------------------------------TGTCTG----TTTACAGCCCAATGAAATG-GGCGTG s bosTau2.chr22 39171376 414 - 48330986 ATTCAAGTCTAT----GCAGTCACTTCTAATTCACTTGCACTGTTTGGGAAATG-CAGGTTTACAAAAATACATGTTTGGAATAAAAAAAAA-ATGGCTGCAAATGATTCAGGAGT-TCAGTCTGtaatttcttt--tgctaatttcttttgcCTTTTTAGGTTATTGAAGATGGGGTTTCAATGTAATACCGCATGAACATTTAAAGAGCCTGTGCAGGTCCATCTAATTAATTGCACATAAAGAACACACTCTATGTGGTGGAACTGTCCCTGATCTTTGACCTTCCTTCCATGGTCCTCACCTTCTCTGTGCGTCACTCAGCCACCCAGGGCAACACCTGGAACCTTGGCCTTAGGATTTTGTTGTTGTTCTgtcactcggtcatgtctaactctttgtgaccccatggattatggcatg a score=6070 s mm7.chr9_random 3672258 237 + 9745104 AAGCTCTCTGCCGGCCCTCTCCCACATCTACAGACACTTCATTTTCTTAGATTTTAAA---TCTCTATTTG-CTAATTATAGCCTCATTCTTATCACACATACTTTTAATATATGAATTTTTTTTCTTTTTTCCCTAGATATTACTAACAAAGGTCTACCTAATATGTTGCTTGTCTTCAAAAATAAG----------CCTCTGGCTCTCTTA-------TGTCTGGGTTTGGCTTTCTCGTTCATCAGTCACAACTT s bosTau2.chr22 39172064 252 - 48330986 GAGCCTTTGGGTAGCATCCTGACACATTTACAAACATCGTGTTCTCTTAAATTTTTAATCTTCTCCatctgtctagttatcttcctgttcttatctcaaatggtgttcatttgtgtg-tttttctcttttttccctagaagaggccaacaaagatctatttta-atg----atcttttcaaaaataagtcttgataaatctttggctataccagtgaaatctactgggttttcctttctatttcattaattactgctt a score=9192 s mm7.chr9_random 3674887 420 + 9745104 GAAAGCCTGAAAGCAA----AAGGCTGTTATAGCACGTGTACACCAGGGTAACATTTGTGAACATTATTTATTCCCTCTGGGTTTTCCATTC-ACCAGAGATGCCTTTT-------GGTTTTATTAATGATGATGCTACAGATGTCGCTACTGGCAGTCACTCTGTATAGTGTAAAACTTGTTTGATGTAATGATCAAGACTAGTTGTATGCCAGACCTCATGTGATCCAGCAGACCAGGAGAGGGAGGTCGTCTTGAGTTAG-----------TGCGTGTTTAATGTCAGCTGCAGTCATTATTGGGGTTCATTTCAATGCTGCCCAGGTAGACACAACATGTATTACAAGCCCTGACTCCCTGGAAGTGTATATGGAGGATGGGATCT-----GTCACACAACTCC-GACAGAT--GTGATCTGCCCCT--ATCGGGCTGAGAAAGCTCAC s bosTau2.chr22 39179914 422 - 48330986 GAGATACTGAAAGCAAGATGAAGAGCTCTATACCACACGTTCATGAG-----------------TTATTTATTCCCTCTGAGTTTTTCATTTTAGTTGCTCTACCTTTGAGTTGAAGGTTTTATTAATGATACTGCTGTTAATGTAGCTATTGGCAATAACTGTGCATAGT--AAAACTTATTTTATGTACTT-------TTGACTGCATGTTGAAACTTGTACGA----ACATATGAGCTGATGGAAATATGTATACATTAGACTCCTACATGTCAGTGCTTAATATCAGCAGCAATAATTATTAGGATTTATTTTTATGGTACTTGTGTGTCCATAGCAAATTCTATAAACCCAGACTTACTAGAA-TGTCTAAGAAGGTTGGAATCTGAAGAGATATATAACTTCAGACAAATACATGGTCTTTCTCTACACCCGGCTGAGAAGGTACAC a score=3861 s mm7.chr9_random 3679184 149 + 9745104 AAGCCGTCTCCCAGCTGCCCTCTGGCGGTCAGAATGCGTCACTGCAGTT-------CTTCTTTG-ATGTGTGTGGGTGTTTC---------CAGGAACTCAACTGAACTTAACTTTCCAAAAACCAGTCAGTGAAATAGTGCCAGGGGAACAGCGGTAATCAAGAA s bosTau2.chr22 39187711 156 - 48330986 AATCTGGCTCCCAGCTGCCCCCTGGTGGTCAGGACCCATCAGGGCAGCCTTAACAACTGCTCAGAAGGTATGTGGATATTTTTGTTATTTATGGGAACAGAAC---ACTTAACTTCCTAAAA---GGCTAGTGAGAAAGGGCTAAGAg----gcaacaataaagaa a score=4041 s mm7.chr9_random 3679402 377 + 9745104 AAAATACTCCAACCATAAGCTTACAAAATCTAATTTCAAATAAGACATTTGTTTCTAGCTGCAGAAGTCTGAAGAAATAGTGAAAAGCCCCAAGGTGAAGT------------------------GGGGCTGTCCTCT--GCTCTGATTCCTGGC---TGTTCCCCAACTCC---------------------------AAAGTTAAAGACACCG---CACTGAGAGGGTCCC------------------------------------TGAAGT--------------------------GGAAGATTT--GCTACGATTTCATCACAACTAC--AAAAAATGTTAACCTTAAAGATCCCACATAATCCCAACAGAGGCGCTCTTTGATTCTGAAATATAGATGGACGTCATGCCGTGTTTAATATAGAT---------------------TACATGTGTTCAAAGATGTTTAGGTG-GTACCCAGAGCCTATCCACTTAGAATGTTTTCCA-TGTATGTGTGT s bosTau2.chr22 39188361 520 - 48330986 AAAATACTTCAACCATAAACGTATAAAGGCAATTTTTGAGTTCAACATTCGTTTAGAGTTGCAGAATTACTGAGAAATTGAGAA-----TCACGATGAAGCGTAGCACATGATCCTCAGCCAACAGAGGCTGTTCTCTGGGGCCTGTTTTGTAACCTATAGTCCCCAttccctgaccagggacggaactcgcgccccttgcagtggaaagcacagaaccaccagggaagtccCAAGGCTGTTCACTCTTAATCCCTTTGTAATAGTCAGTGAAATGCCACTAAATCAATGGGTGTCTCTTGGCAACATTTTCTCTACAGTGTCATTGCCATTGCTAGAAAAATCTTAATTTTAAATACATCTTATAAAGATAACAGAGACAAGATTTGATTCTAAGCTGTTTATGTTCTTCTTGCAGTGTTTAATGCAGATCCTTTTCCATGTTTGTATCTGTGTATGTGTGTGTGAATGCTTCAGTGTAAACTCTGAGCCCCTGAGTTGAAAACACTTTTCACTGTACATAAGT a score=18914 s mm7.chr9_random 3680638 653 + 9745104 TCAGTTCTAATTATTCTCTGGG-TCGCTGATTTAAAATACCTT--------CTATGTCAAATCCAAATCCATCTATCTACCTCATTAGATCCCAGCACTCTATTTAATGAATTTTCTGTCTCCAAACTCATTTTATGTATACGGGTCGTGTGCCAGATGCTGGATGCTTGCAGAATGCAAGATCTATGATGCTCTCTGAAGAT---ACAACTTTGTGTCTCCACAGTTTAGAAGATCTAGCTTTCTGTC-TACAGGGACT-----TGACAAATTTACTTCTTTGCTAAATCCCACTGAAAATTTCCTGGCTAGAGTAGTTCA---TGTTATCAGGAAGCAC--------GCGGAGGGCCATCTCCCGTGACGTGGGCATCACCGTTCGGTC-----ATGTGCTCT--CTCTCCACAGGGAGCAGTGGTTTATTAGCTGTCAATTTGTAAAGTGCTCTCTGAGATTATCTGA-TGTGAGATAAGAAGAGTGTGAACATAATTCATTGTCTTCTCTGTCAAAGTAGAATTAGCAAGCACTCTATATTTTATTCTAT---GGAGAGATGGAAATGCCAGTGAGT----------CTTCA------------CCAGTGTCCTGGCTGGGTAGCTGTGGTCATGGAGCTTGATGGCTTCTTCCATTATCGTTTTGGATTGTTAGCTGTTATAGGTTTTATATAGTTATTTAACTATATGT s bosTau2.chr22 39189206 677 - 48330986 TTAGTTCTAATTATTCTCTTGGCTCCCCAGTTTAAAATATTTTTATAAATGCTATGACAGATACAGATCAGTC-ATTTAATTTATTTGAGTACAGCACTCAGCTTAATGCATTTCTT---TTTAAATTCATTTCACAT----TGATCATATGCCATGTAACAAAACCT------GTATAAGATCTCTATTATTCTCTGATGATTTCCTGACTTTGCATTTTCATATTGTAGAAGATCTTCCTTTCTATCATGCTAGAACTATAGTTGATAAATTC-TTTCTCTGCTAAGTTCCC----AATTTCACTAGCTGAAATATTTCACTTTGTTCTCATGAAGCATTAGTAGGGGAAGGGGACTGTCTTCTGTGGCTTCAATATCACTATTCCATCTGGGAATTTGCTCTGTTTCTCCACTGGGTGAAGTGGTTTATTGACTGTCAATTTGTAAAGTGCACTCTGGGATTATCTGATTGCGAGATAGTAGGAGAGGAAACATATTTCATTGCCTTTTCTGTCAAA-TGGAATTAACATGCACCGTATATCATCCTCTAGCAAGAATAGAT-GAAATTCCAGTGAGTGGCCTAGAGCCTCCATTGCATGGTTGTCCAGAGTCCTGGCTGGACTTC---------AGGGTCTAAGGGCTTCCTCTGTTGTCCTTTTAGCTTAGTAGTTGT------TTTTATACA--TGTTTATCGGTATAT a score=13009 s mm7.chr9_random 3685110 587 + 9745104 TCTGATAA------TGACTGTTGCCGGTGTATGCTCTA-TGCTTCTGGAACTTTTAAACTGGCTTAGCACCG----GGAAGAAACACAG-CAGCTCTTACATAAATAATCGAACTGGCAATAAAGCCGTTGG-ATCCACAGACAGCCCTGGTCCTTGGAGATGAGAATTTTCAAAAAGCAAGCAAGCGGCTGTGGTCCAG----TCTTTCTCGGCAGAGCGCGGGCAGCTCCTTCGCTGCCTC-ACAGAGGTGCGAGCATTAGTCTGGCCTCCTGGCTTCTGATCTCAGCCATACACAGCACTCGAGGGAAATATCC--TAACCTTTCAGGGCCCCAC---TGAAGAAAGTAACATTGTGTAAACAGAGGA-GAAAAGAAACCC------------------GCCTGGAGGAAAATGGTGTCAC--TCTCAGAAA-GGAACTGGTGTTCTTGGCAGCTCAGGCCGGTCTGAGAAGAAAGGAGATGCGAGCGGGCAAGGAGCCTCTCTGTGAGAGTCCCTGTGAGGGAGCATGTG-----------TGAGGTCGCAACCAC--TGGCCAAAGCCCAAAGGAGGTAAATCCTGTTTGCAGACCCATTCATTCAAGGGGTCCTGGC---------------------CTGCAATTACTCTTTCCTGCTT s bosTau2.chr22 39194465 621 - 48330986 TCTGATAACAACCATGACCAGAGCTGGAGAGTGCTTTGCTGCATCTGGAACTTTTAAAGCAGCTTAGCACCAATGAGGAAGCTGCAGAGACAGCCCTTATATAAATAATCGATTTGCTAATAAAGGAGTTTCCATCTGAAGGCAGCCCCAGTCCTCAGAGACAAGAA----------------GAGTGGTTGTGGTCCAGACAGTCTTCCCCTGCAGAAGTCCTGCATTTCATCAGCTGTCTTTGGAGAGGTGCAAGCA---GCCTTGCCCCCCAGTTCCTGGTCTCAGCCATACACAGCACTGGGGGGTGGTATCTAAGAATCTTTCAGAACTCCACTGTTGAGAAAAATTTATTTATATCAATAAAAGAGGAAAAGAAACTTTAAAGTTGAATTAAGTTAGAAAGGAAGAAAAATGTGTTTCGGTATCGGAAAGGGAAATGTTGTTCTTGGCACATCAAGCTTTTCTGAGTAGTA---------------GCAGGG----CCTCCTTCAGGGGCCCCGTGCAGCA-CATGGGATGGTCTCATTTGAAGGTGCAGCCCCGTCTGCCAGAGCCAGGATACGTTTAAGCA-GTTTGCAGACTGACCC-----AGGGGACCTTCCTTCCACCTCTCCCTTCTCATTCTGCAATTGTACTTTCCTGGTT a score=22792 s mm7.chr9_random 3689542 2248 + 9745104 ATTTGTGACAAATGACTTTATCCAAAGGAACC--CGCTGTGGTCTGGAGTGATCCCCAGGCCTGT------GGCTCCA-TTTCTAGAATGGGCTGAGGAACCTAGTCACTCTGAGACCCACCAGGTGGTGGATTTCCCCCACATGGTGATTGCGATGGGCTCCTGTGAACCCTTAAAC-AGGTAGAGGCCCCCCTGCTTGAGGCCTCTCATGCTGGTTCTTCACTTACGGGACCC---TCCCTGCGGCTAAGGGAGACTCACCCCACCAAGGACTCACAGACACAGCACACAGGAAAATGAGTTTGGGGgccgggaggtggtggctcacacctttagtaccagcactctgggcgcagagccaggaaaacctctgtgagtttaaggacaacctggtctacag--agtgagttccaggacagccagggttatacagagaaaccctgtcttggggaaaag----aaaaaaaAAAAAAAAAAAAAAGAGTTGTGTTTGGGGAACTCTTACGGTCTAGCCAAATCA----GGCTGGTTAGAATTTTCAT--TTCTCCCAAAATATTTTGATTCCG-TATTTTGCAAATATATTTTAATGGTTCCAGAATTTCCATAAACTTAACTTCTTTGTTCCCATCTCAAAGCTCAGGCCAGGACGGGAATTCTCTTCGGTGTTGTATTACTTTGAGCAGGTTCTGGGCTACGGACCACTGTCTGGACATTCTTGCTTAGGGAAGCAAGATTGAGAGATAGGAAATCACTTATTTATCTGTCCCCCCAAGTCCTCACCCA------------CCTCCTCTCCATCCACCCTAGCCAGCCT-GCTCTCAGGTGCGGATTACAGGGAGGGCCTCCTCCCAAGGCAATGGAGTACCTGCACCAAACAGGGCCAACAGTGACCGCTTGCTGGGATCGGGAGCCTCACCTAAGAA---TCAAGGTTAGCAATGCA--------------CGCACGGGGCCGTTGACA----GTGAGCGCAGCAGTATATGAGCATGCGTGCTGGAGCGATTAATGAGGCATGAACACATATGAGAGAGGAAGCCAGCAGC----------------------------------------------------------------------CTCAGCCTTTCTAC--GCAGGCCTCCGAGGAAACTGCTGCGCCAAGCAGAAATGAAGTAGAGACCTAGTCTCACCCACGAATTGAATCTGAGACCCAGACAGCTGGGTTCAAAGGGAGCAGGAGGAGTTTCGAGCACTGTCCTGGCAGACACGTGGGAGCCCAGGTAGGGA-AGACAGTGAAGAACAGGCAGTGCCAACGT-AGAAAAACCAG-CTGGGCAGATA--GTCTCATCAC--GTGTGCCTGGTGCCCTGGCATGTATATGAGCCTGTGTACAGCTGAGCATGTGGCTGCATGTGCCAA----------CCAGACCAGCCTGGCTGGGGCCCCGCCCATGGGAATGATGCCAGCAGGCAGTTACCACGGGCAGCCTCCTGTCAAAGCCCATGGTGAGTGA-GTGACTGGAGAAGGCAGCAGTCTTCCCAGCGAGGGCCACACATGCACACAGATACCCCAAACCACACGAATAAGGCTGTGTATGTG------CGGCTACTTTTCATCAG-----------------TAGCCTGG------------GACAACCCAGCGTTTGTGTGGGGCGAGGGCGGAGAGCACAA--CGTATGAGGTCCCACCTCAAAGGGTTCC-----------AGTTGTGAAATCAGCTTGGGCCTCCTTGA------TCTTTTAGGACTCAAAGCCACTGCTG----GGTTGAGGGCACATGGGGGTTGC----TTACTTTG-CTCAGGAGCTATTCCATCATAATAGGGGGTCAGGGTGGGGCTACATCCTCCCCTGACTCTTGGTTTTCAAGTAG--------------------CCCGTTCTTGTACCCAAGTTCTCT-GGTAGAGAATATCTGGGATTTTGGAGGTAGTGTGGGAAAG---GGTATACCCTCCTCT------GCTT------TCTAGATATACTTGGAATG------------------------------------------------------TTCCCAGGTTTGAAAACACTTCCTG---AACGGCTTTATACCAAATCCCCTGCCAGCCCCCGTGTT-----CATCAGCCTGGCTGCCTTTTTCTTCTTTGCCAGTGGCCACCATCCACTCTGGTGGATGTCTTCCT-----GAGACTGGATGCCAA-CAGAACACGTCACTCTGGATCC--TGTTCTCTGTCCT------------CCCCAGACCCCTACATTCCCAAGGACTCTTCTATTA-------------------------------ATCACAGCAGCTGGATGGAATAGA-------AACAAGGCTGGACCCTCTCTGGCTGAGCTA-----GCCCTAAGGAGCTGGTAGTTGGAAGAGCCA-------CACCCAGCTTGACAC--GGCAAGGAACTCACAATGT-TCAGCCACCAGGGGGCAGGCTGCACCTGCTGGACCACTGACCCATTTCTGGGACTTTATTCTTG------------------------------GGCATCAGTG s bosTau2.chr22 39196679 2466 - 48330986 ATTCGTGACAAATGACTTATTCTGGAATAACAGGTGCTCTGGGCTGGAGTGG-CCCTGATCCTGAATGTCAGGATCCAGCTCCTCATGTCAGTAGTGGGACCTCAGCATCCCTGGGACCTTCAGGTGGTGGGCTTCTCCAGGATC-TGAGTTAGTTAGGCTCCTGTGAGGCCTTGGGTTGGGCAGAGAGCCC--TGCTGTGAGCCCCCCATGCTGGCCCTTCCCTAAGAGAGTCTCATTCCTTGCAGCCAAGTGGGCCTCTCATCACT--------------------------------------GGGGCCATGTGGT-------------------------ACCC---------AGCCAG------------------------AGCCTGGCATACAGTAAGCAAG---CAAGATG---AGGGGCACTCA-------CCCACCTTCATCACAGGGCTCACGGAGACAGAAAACATTGAAGAGTTTTGT-----GAACACTCAAGGTCTGGCCACATTCATATGGGTGACTAGTGTCTTCTTCGTTTTTCCAAAGTATTTTACTTTTACTGTTTTAAAAATAATTTTTAATCATCCAAAGATGTCCAGAAACTTCACTTCCTTGGTCCCGTCTCCAAGCTCAGACTGCGAGGGGTGCCCTCTTCTGGTTTGCACTCATTCCAGAGCCTTCTGGAAC-CAGACCGTCATCTGCCTGCTCCTGCCTGCAAAGGGGAGGCTCAGAGAGAGGGAG-CACTTG-----------CCCCGGGGCCTCTTTCAGCAGAGACAGGCCCGCATGCCCACCCACCCACCGCAGCCCAGCACTCAAGTGTAGAGCACAGGGAATGCAG----CCACGGCCAT-GAGACTGTGTAGTCAGCTGAGT--ACGGTGGTGGTTCCCTGGGGT--GAAGCTT----TAGGGGTGTTGGGGGGCAGCAGTGCAGGGAGATCAGGTGTGGCAGAGGCCCATTGACACAGTGTgggggtggggaactagggagggggagactggaggaggaaaggaagaggga------gggagagtggaaTCAAGAAGTGGGCTGATTTATTGAGATCATTTTTTTTTCTCCCTGTGTTCTCCATTCCTCCACTTCCAAAAGAGATAGGCTGGGCCTCTCTCCCTCTAGACCTCTGGGGACATTTGAGGGAAAAATAGAAATTGCCGACAGATGCTCCCTTGCCCTC-ACTTGTGTTCGTGTACATGAAGGAGTGTTT----GGGACC---AGGAGTGTTCAGGACCATGAGGGCAGGAGACCAGGGTTCCAGGGAGGGCTGGAGAGCGAGGAGGGGGCAGTGCCAAGATGGGAGAAACCAGCCTGGGCAGAGACGGCCCTGTCAAGGGTGCGCCCTGTGTCCTGGCATGAGTGTGAGCCTGTGCAC-----ACAATGTTCCTGTGTGTGCCAAGCTGTGTGTCCGTGACCAGACT------TGCCCAGCAAACAGG--TCATGCCA-CAG------ACCGCGGGCAGGTCTGGGTC--TGTCCCTGTTGGGTTACGCAGCCTCAGCAAGCA-CAGGTCAGGGAGCAAAGGGGGCACCCGTGCCCGGG---CCAGAGCCAGGGGCTGAGGAATGTAGGTGGGAGAGGCCAGCTGCCAGCCGCCAGGCCAGAGCAGCCTCCACCAGCCTGGCCAGGTGACACTGAGGACCCAAC------ACAGGGCAGGTGTTGAAGGGGCAATCCATGTATGGGCCCACCTCACGGGGCTTCATTGGCTCCAGAGTCACCAAACCAACCTAGGACTTGGTGACTCGGCCCCTTTAAGCAGCAAAGCCACTGCTGCCATGGACGAAGTGACA---GGTCTGCCCTGCCACTCTGCCTCTGTAGCGGTTGCTTTGTAACAGGGTTTCAGGGTGAGACCATGTCCTCCCCATACTCAGGGCTCCAGGGAAGACCAAAACACAGGGCTGCGTCCCCTCAGTCCACTCAAGTTCTCTGGGCAGGGCGGATCTAGAATTTTGGAAGTAGAGGGGAAGTGGCTGGGGTATCCTCTTCCAGGGAGGCTTCTTGGATCTGGGTACCCCAAGGATGCAACATCTCAGCCCCAAGGCTCCGGAGTCTATCTGAGCTCCAGCTGAGTCTTGCTCTCAAAATCTCCAAACGCATCCTGACCACCACCTTTACTCCACGTGTCCTTTT-GTGTCTGTGCTTGGGACTGCTGGCTGACTGCCCTTTTCTCCTTCACCAGCAGCCAGCATTCACTCTGCCATTTCAGCTCCTACTCCAGCACCGGCTGCCAAGTGGAACACATCACTCTAATTCCCTTGCTCTCCACCCCTGCAGACAGGCACCCCAG-CCCTCACATTCCTGAGGGATTTTCTGTTAATACTCGGGGAAAGGCTGGGCAGATGTGCACATCACAACAGCCAGATGAAGTTGGGGGACACAACTGAGCTGTATCCTATCTAGCTAGGATACCAGCCCCCCGGGGAGCTGGCAGGGAGAGAGGCCAGCTTCCGTATCCAACTGGGCACATGAAAAGGACCTCACAACATGGGGGCCACCAGAGGGCAGGCTACACCTGCTGGACCACTGGCCCAGTAGCGGG-CATTATTCTTGGGAGTGAAGTCTGGAGTAGACTTCACTATTGGCAGCAGTG a score=2966 s mm7.chr9_random 3691790 302 + 9745104 TCTTTATTGGTAGGAAGCATACAGTATGCAAGCACCCCCTGCCTGAGGTCAGGTAGAGGGCATCCCTGGGGATGTATGCAGAGTGTGGATG-GCTTGAGAGCCCC----------TGGACACCGTATTCAAGGGGAAGAATC--TGTGTGATGAGAATAGCGGGTCTTC-------------------ATGAGTGGATAGATCGCTGGTGAGGGTGAGCTGTTGACCCCTTGGGGATGACGTCATGCCCCAATCTCATTAGGGATGACGTCATGTCCCGATCTCAAGCACGTACCCATGCTTTGGCTTTGGTTAT--GTAAGCTAGCAGACTCCCT s bosTau2.chr22 39199350 314 - 48330986 TATCTCTAGGTGGGAAGGATTCTGTGTACAGA----TCCCACCTGGATACAGATGGAAGGCATCTCTGGGGACA-AGGCAGAGGGAGAAGATGATTGAGAGGCCCCAGCTGGCAGTGGACACAGGCATTTAGTTGAGGGACCTGTGTGTGATGGGGGGAGGAGGGGTTCTTGAAAAGCAAGAATCGGGATGTGGGGAAGCATGGGTATTAAGGGTTAAAAATTGAGCTGCTGAGGA---------GCCC--------TTAAGAATGGTATCCTGGGGCAACCTGAGTGAGGAACAGACAGGGTGTCTTGGGGCATAAGGAAGCCTGGGGGCTCCCC a score=13588 s mm7.chr9_random 3692393 742 + 9745104 ATCAGT-GCTCCAGTTTACTCACAGGTTGAAGTGCTGGTGCAGCCTGGCCTTCTGGGCC-----CTCTTCCTCCATCACT------------------ACCCAGCCTTCTCTGTGCACAC--TGGAGGCAGAAGTCCACTCACTCAGAAGACTAAAGCCTCAAAGACGACTCTG--GGCA--ATCATTCTGTGAGGACTCCCTACAGAATAAACCAGCTCTTCTCTGGGCCATCAGTAATTATCCCTCTGCTTTGTCTACTATGCCGTGAGCCTCCTTTGAGTGTTTTGCCTGCTTCGTTAGGCCTAAGCCTTCCATATTAAAG--------------CACAGAGG-TATA-----------GTGTAGGTGAGGCATGGTGTGGTCTGCCTAGGCTGGAGTGGGGCTCCTTGGGACT---------------TTCTGGTACCCACTATGAGAGAAGGGATGTTTGCGAGAGAAATCTCACCCAAGTCCTA-GTGTCCCAGAGAGACAAATCCCCAAGGGCAGGCTCTATGGTGCATTCACCACGAGTGTCTCTC-----TCTCTGTCCAGAAACTACTTCCTCT--TTCTCCAACAAGAGAATTGCCACCTTTAGGCTGGGCTCCTAAAAGGG-----------AAAGTTAGAGGAAGGAA-----GGTACCAGAGACCTTGAAGGCATGGAacacacacacacacacacacacacacacacacacac--------acacacacacacacacaAACCCGAAGGGACA----CAGCACCAAGAAATAGCCTGGA--GCAGAGATTCA------------AGGGTGGAGAGCAGGCTGGG------AGGGCCAGAGCAGCCCTTCTCCCAC s bosTau2.chr22 39199912 835 - 48330986 atcaatggcttcagatcacccgcaggttaaagcccaaactcaacctggccttcaagaccataatctcttccttcatcaTTATGTCCTCCTGGTCCTCAATGCAGCCTTCTCTGTGGACACTATGGATGGAAAAGTCCTGTTGCCCAGAATCTGAAGGCTTCAAAAATGACGTTGTTAGCATCATC-TCCTCTGAGGAGACCCCCTGGACTG---CTGCCAGTCTCTG-----------AttagttctctacctcttccattaggctgcaagctccttgaggatgctttgtctactgcatttggcccaagcctggctcactgaaggcacccaatatacacctgGAGGATATACAAAAGGACCTCTGTGGGTG-----TAGCTTGTCCTGCCTAAGCTAAAGCAGGCCTTTGGGGAACTGACTTCAAACTCTGAGCCTGGTTCACAGTATGAGAGAAGGAATGTAGCCTGGATAAACCTCATTCAGTCCCAAGGTGACCCCAAGAGAGAGAT---CGTGGGTGGGCTCAGGTTCACAGCCACTG-GACTGACCATCAGGAATCTTTGCCCAGATCCCACTCCCACTTCTTTCCCAACAGAAGACTTGGCACCCTCAGGCTCTGCTCCTAAAAGGAACCAGGAagatagagccagaagcagaaacagttggaatcagaga-----aagaca-gagacacagaaaaacaggtacagaaactaacagacagacagaatatgagactgagatgcccacaga---gaagagagaaaagcagagggagagGAGAGCCTGGAGGGAAGAGGTTCAAAACCACAAAGCAGAGTAG-GGGCAGGCTGGGAATGGCAGATCCAGAGCACACCGCCCTCCGC a score=4705 s mm7.chr9_random 3695299 224 + 9745104 GGTGATTTCAGGAAGCTTAGAAAGGTAGAGGGTGCGGGGGGGGGGGGGGGAGGCAAGAATTGTTACTGGAGAGTCCCAGGG--CATCGCAGCGACTGAAAAAGCAGAGC--AGGAGAGTCAGTGTCTGAAAACCGTTCCCGTGGTAGCCCT------TTTCCCA---------CAGGAACAG--TCCTTGGAAGTACTCCCACCCCCTTCTCTTAGGCAAAGGAATCCAGAGTTTAAA-CACGTGA s bosTau2.chr22 39202811 220 - 48330986 GGTGGTCTCAGGAAGCTGAGGAAGGTGGAGGATGCAGGTATGGG-----------AAAATTGTTACTGGAGGGTCCTGGGGAAAATCTATAGGACAGGAAAGGCCAGACTGAAGATAATCTGTGTATAAAAATTACTTCCTT--TGGCTCTGAGCTGTTTCCCAGCCTCAGCTAAGTAGCAGAACCTCTGACAGTCCCCCAACC-------------AAAAGGAATCCAGACCTTACCTCACGTGA a score=88760 s mm7.chr9_random 3695537 6755 + 9745104 CTATGCCAGGCATATCCTCAGAACGT-GTGACAGGCATTAGACAAGTTGAGACAAGGTGAAGCTCCGGTGCCACTGGACTTTAA-TGAGTCTGGACCTTAGAGAGAGAGGCCATGCCCTGGCTGGCGGGTGGGCTACTTGG--TACAGCTTGCGTTCCTAATCAAACGGACACTTCG-----AGCTTCGTGGTTTGGTTGCCCCTGGATATTC-TGGGGATCCCTAAGGTGCTTCGGGAAGAGCAGAT-ATTCCTGGGTGAGTGCACCCTAAGGGCAGCTGG---GACGCCTTCTCCACGTACAGCAGTACCAGGATGCCACTTGAGGTCTTGGGTTTGGGAACAAAATGTTAACTTCTTGCCTAATTCTCGTAAACAGCAGCTCCTCTGCAGACATGCCTCCCTCCTGTTTCGGGGCGGGGGGGG-------GGGGCAGTCTCCAACAGTGAGGCTCCATAGATTTCACCCG------------------TCTGCGGGCTCGCGTCTACCAGAGGCGCTTCTGGAAGTTTCTTTCCAACTTTG-----TAGACGCTCATC--GGTGAACACGCGGCTTGAATGGTGCCAGCGCCGGGATCGCACCGGCGTGGAAAAGTAAGGAA--GTCCCAGCAGGCCTCCCCTCTTGAAAGCCACCCGGGGAGAGGCGGGTAGGGGAGTAGGGGGCAAGTGCGCGCGCAAACTGGCGAATGGGCGGAGTTAGATTGTCTTCTCCAGCCCGTCTGTCAGTCACGAGCTTCAGCTCCGCCCACACAGCGGTAATTGGTGAGGAgcgcgcgcgagcgcccgcggcccgccccc-------------TTCAGCACTGCCCCCGCCCACCGGTTGACAGGGCTGCAAGTGGGG----CCTGCAAGTTGGAGCAAGAAGGTGCGTGCGGGTGCCGAAATGCTCAGACCCTCCGAAGCTGATGGG-CACCTG---CTCACACCCA-GCTTTGGCTGTCACCCCAGACCTGACAGCAGCCCGATGCTCAT-----GTACTCGAGTCCTGGCCCAGCTCTGCTCCTACAGGCCCCTTTCCACTCCATCAGCCACCTACAGCCTCTTTTCTGTCTTTAAGTGGCTGAACCCCT------------CGCCGAGGTGCCCACAGTCT----------------CATGTGCCAAGAGGTCTAGCCTCGAGGACGCACTGTTCTGCACACCGACTCTCGCCCGGGCTGCTTATGCGGACTACACAGTGTGAGCCCGGTCTGCAGACTC--------TCCGCGCACCTCTCATCGCCTCCTCACCCCCAGGCCCAGCATCCCCTATGGCTCACCTCACAGCCTAGCTCTACATTACCCCAACTCTATGCCCGAACCCCGATGCAGCCTCGCTCCCTGCTCCCCTGCG-------GAACCCTCC----ATTCCCAGTTTGAGCGTCAGGACGTCCCTCACCCGGAACCCACTACCGACTGCAATCTTCTCCCACGGTACCTGGACTCGGGGTGAATAAACCTCCCCGG--GCCTCAGCCGGCGATCCCGCTGCACCCCGGGC--TTCCGCCGAGCACTCCCCGCGCTTCCATTCCGCGCCGCGCGGCCCACACCTCGATCGCTGAGCTTGCTCTATCTCCCAGG----CTCCGCCGCACCCTCCCACCTACCCCGAGGCCCTCTGTGCCCCGCACGCGCGCGCCACCGCCCCAGACCACACCCCGCACGCTGTGCCCCCCGACTCGGCCCCGCACCCCTCTccccggcgggcgg--------cggacggcgggcgggcgggcagcgccggcggcggTGGAGGCCAGTCCTCGGGCCGGGACACAcccacccgcccgccctcctcgctttcctccttccctccccctcgcgctccctctctcccgccctcccgccctAGCTCCGCGC---TCGCTCCTTCTCTCCGTCGCCTGCTCGCGCTTCC---------------------------------------------------CGCGGCGCCGGGCCTCCCGCTCCGCCTCCCCGAGCGCGGCTCTCCCGGGCGCGGCTCCGGGGTTCATGCTGACGAGGCGGCGGCCGCTTCAGCCCAgcggcggcggcgacggcgggagctggggcgcgggccccggccgccTCTCTCGGAgcgcggggccg--------------------ggcggcggcgagcgccccaccgcgccgcgcccctgcgcgccccctacgccgcgcccccgcgcgccccccgcgccTAGCCTgcggggggccgggcctgcgggcggccggcgcggcgcgcACCCATGGACGGTCCGGCCATCATCACCCAGGTGACCAACCCCAAGGAGGATGAGGCCCGGTCGCCCGTCGCGGGCGAAAAAGGTGAGGAGGGGCACGGGC--AGCTGCCGCGGGGGGCGTGAGTGCACCCGGCGTCGCCGGAGTTCTCGG-TGTGCGCCCGCACGGGCGTGGGGGAGGGGT------GTACCGGGC------CAGGAGGGTGCGTGGGT-----GTGGGGTGCGCCT-----------GGAGCAGAGGGAGGC--------------------------TGGGAGGGTGCCTGTGCCAGCTGAGCTCGTGTGAGTGTGCATGAGCGGCTGAGAAGTTGGGA-------------------------------------TCGGATGTGTGCACTGCACAGAGCT------------------------------GTTTTAAGTGTGCATGC-----------AGTGCGTGAGACAGGTTGTGTGCACAC-------CTATGTGTACGCGCAGGCCAACTGAGAGATTATAAGGGCGTGAATGCTTTTAGCAGATTGTGTGTGTTCCTGACAGGCTGTGAGT----TTGTGGACTTAATGTGGAGGTCTGTATGCCTCTGACTGAGAGGTGGTG-----------ATCGGTGTGCA-----GAGCCTGAGCGTGTGGACCTTGTGTGTGTGTGTGTTCACTCCTGATGGAG-TTGTGTGAGAGAGAGAGAGTGTATGAATGTATGCCTACGCTATCCTACTGTCA----GAATGTACTGTGTCTCTTTGCTGTTTGG-----GTGTATGTGCATATCTGGCTTTG-ACC----AAGATCCTGTGTACACAAGTGCACACATGCTTGTGCCTGTTTGTGCATAACACAGAGAGGCCATGT-CTTGAAAATATTTAGTTGGTTGTGCAAGTGGAGGAGAGAGGCGAGGAGCAGCGCCGTCCCcacaacaccacacacacatacacacaagcacatatgcacacTTCCTTTTTAGCT----TGTCTCCCAGCCACCAACCAGCCTGTCAGGAACTCCACCGCCTGGCATCTCCGGCCTCTTGTGGGTGGGGGGAGCTCTACGCAGCACTTGGCAAACGCTTAGTGG---CTTAGTGCGTTAGAGCTGTCCCCTTTGGGGTAGTTGGTCAGGGGCTAACCAGGCAATGCCATGCTGCCTGCATCTGGTTTGTTTGGGGTCTATTCCAGCCCCGTC-CCTTCCCCTGTTTACTTTTTGCTCTTTCTTGGTATGTTGACCCCTC--AGAGAACTGACGT---CTTCACACAAGTGCCCGGAGTCACTGTGTCCT------GCTGGTTGGA----CAGACTGTTTTGAAGAGCCAACCAGTCTGGTTTGGTTTGCTCTGGCAACTGACTCTTGCTTCACAGTCCCT---------CTAC--------CATGTGTAGCACACACATATAAGCCCCCCTCCACTCCCAAAGGACCTGCTTGTCCCCTCCAGCCCTGGGC--TGGCCACAGCAGACACTGGAAGAGTCACGTTTCTTTCCATTGGCCTCCACCCT--CTGTGTT------------TGTGCA--CCCTCTGGGGATTGAGGTAGAATGAGGATGGGAGGAGCGGTCCACTACCACTGCCTGCCCTGGACCCCTTGGGCATGCCCAGCAGGAAGGCTCAGGACTTTCCCCAGGTCCCCTCAGGTGGG-GATTTGCCACCTGCTTT-CA--CTCCATAATCTGTAAACACCACCTGCCCTACAGACTGGTTT--CTAAATGCAAAATCAAGAATTCCAACTCTTCCCCAGAAATTGTCTATACCTTATAAATGAGCTTTTCAAAC-CTGCAGGAGGGCA---TGGAGTGACTTTCACACCTTCCTGGGGCCTAAGTGAGGAGCACCTCTC-TGGTCTGGCCTTCCCACCATGAGGGCC-TGAGCTACTGAGGCCC----------TC-----ACTGGACATGTGCCCTC----ACAGGGT-CTTGGAAGCAAACTTCAAGAAAGCGTGGAGAACCCAGCATTCCTC-----TGCACTGTGGGCTTTATGTGAT------------CAAAACCCTGGTTCTTG---GAAGAGGTGTGACAAGAAGCTAGTGGATACTCGTCAGGACCTGGTTCCTCTTGCTGC-CCCCACCTCACCTCGGGAGTGGGCCATTTTGCGAGCTCCCCGGGTCCCCTGACTGATCCGATTCCTGAGTCAGAATAGGTCTGTGGGAGAGCCAAACCCT-------------------GTGCTTGTG------ACTGGAGGCGCTTGCTCTGCACAGCTTGCTGACATTGCCTTTTGGGACGGGCTTTTCATATCTTTAACAGCCTGCTTTGTTTGTTTTC-AGTGTCAGATTGGTTACTTGTTAACAGAGTAGGGTAATTCCTTGCCTCCTGTCCTAGGGTGGGGTGCTTGG-------------------CTAGTAAAAGCACTAAAGTCCCACTTTACCTAAGATTTTTTTTTTTACTCCAAAAAGTTAATATAATCTTGATCCGTCGTAGTATAACAAAATAATAGATGGTCAATTTTATGTTTGTTTATAAGTGTGTGTGCTTTGATAGCCAAACAAATATGAACTATATGTTGATCACGTTTCCCCCCCCCCCCAGCTCCCACCACCTCACTCCAACACATGTGCCTCCCACCTTCATGCCTATTTCTGAGAATCAAATGTTGAAACAGCTTCTTTAGAATAATAAACCACCGAACAGGTTCAGCAGTGTCCCTAGCTTAAGTGTGCCGGTTCAGCAGTGTCCCTAGCTTAAGTGTGCCGATATCTTCAGATAGGCAGAATGCATTCTG-CATAACTTAAATTACGA---------CAATCATTTGGTTATTAAGTATTGGGCCTGCCATGTTTGGAAGTGTTCGTGGCAAGGAAGAGATTGATGGTCTTAAAATGTTTGCTTTCATTATTTACTCTGTAAAATGGGAACAGCGGTGGCCG-CTCCTGGGTTGGATGAGAGGGGTGAGAGATGCTGGGTTGGATGGGAGAGATGAGAGATGAAATAGGAACAGGGAGGACTCCTCCCCATGTACCAGCGAGTCAC---TCCATACACTT---------TATAGGTTTACGGAAGAAGT-------------------CCG------------ATGCTGAATTCCCTCTCTACGC---AGCATGTGTGGAGGCACACCGGTGGCTCAGAGACGAGTGTCACTGTCA-----TTAGCCTGTGGCT-CTGGCTTATTGCTTCCAGCTGTGTTTGATTGGATTGATAGTGTGAGGCTACAGAGAACAGTCCCCCGCAGTGAACTGTTC-----CTGCCTTGCTCTC----------------------ACACAGCCCT----------TAGGAAAAGAGACCAGAGATGGGAACCAG-AAAGTCCTAGAAGAGGAAAACGGAACGACTTCTGAGTCTGTGAGTTACCATTCCCATGTCACTTCTAAGCACTTCAGTGACTTCCGGTGTCCAAAGCGGACAGATGTTTGGAAAATGGGTCCTCCCAGTAGACTTGGGAGAAGATAAAAAGAAATAGTACAAACTTTTCGTGTTGTTAGGATTTAtttatttttatttcatgtgtatgggtgttttgccggcatgtct---catgtatgtgcctggtacctgtagaggccagaagagggtgtttggttccctggaactggggttacagatggttgtgaaccaccatatgggtgctggaactgaaccccaggtctttctaggaacagtcagtgttcttaaccatttatccatctctccatccccAGGAGTGCAAGCGTTCTAAAGAGTAATTTAGTACTTAATGCGTGAGCTGATACTTTTGGCTGCAAGTATCAGAAAAGCAGGCTTCATGCAGC--CTGAGCCAGGCTCCTGGAGATTGACTGCTGTGGC--------TCTCCTTGAACTGCC--CCGATGTTTGTTAGACCAGCA-------------------------------GTTCTCTTGGCTCTCCCACCCCCATGCTGCATCCTGTCTGAAACCTCTCTAGTCTCCCTAGTCATCCTCACGGCGGGAAAGGAGACAGAGTCgggcatgtttctccctcatacctagaaagca-gaccattcccagggacggctcagtaaacttttgttcatgtttaattggccagaactgggtcacatggcctcccccagcCTCAGGTAAAATCGTGGACATTAGCTCCCCAGCATGGCTAGCCCCTGTAGGAAGAAGACCGGAAACAGA-AGGAGCAAGTGTGGTGCCA-TCAATCCCAGCATTAGCCGCGTCTTCAGAGCACTAAGCTACCCCTCCAAGTTTCTGTTACAGAGTCA---CCTCGTTTGCACTCACAGCCGGTGC-----AGGGTTGTCACTGCCAACCACATGGC-----ATAGCAACATTCCCAGCCATCCCATCCCGTGTCAATGGGCAGATGAGGTTGGACAGTGTGCTGTCATCCTTGCAGAAAGAATGCTACCAGACCATTGGGACACACGAGTCAAATTACATCTGAATATGCATACACGTGACTTTCAGAGCTGTACTAAGGCATGACTCTCAGAGACATTTCGAAGCGAGACATTTCAAGAATGGCAT-AACAGTATCTACCCTATCTTAATTTTTTAAAAAAATCAAACACACAG------AACTGAATAAATGTCCAGAAATATAC-AAAAATAATCTTTGAGGAGAT------AAGGCACTGGGATGATTCTCTTGGGGGCAAAGGCTG-------CAGAGAGGGAAACAGGCCACTTTGTTTCAACATTGATGAAAATGTGCTTGTGTTTTAGAGACAAACTTTTTTTTTTTAACTAAAAAGGACATTTCCCTTAGCTCTTTGTAGAGAAA----TAATTTGAAGGAATTGTACAATAACAAAACAAACCCCAAGAAACCTCAATTAATATGCAGAAACACCCAGAACATTTCAATGCTAGTTAAACACCttattattattttttttttattttatttttGTGAGCCA--GTAGGTTTGCTG--GAGATTACTGCAGGGCATTGTATATTCAGGCCCAAAGTTCCGAGTCTGCTTCTCATAAATGTTTG s bosTau2.chr22 39204312 6475 - 48330986 CTGGGCCAGCCATAATCTCAGAACAAAGAGAAAAGCATTA--TAAGTGGGGACAAGGGAAGTTCTCAGTGCCATGGGGCCCTAAGTTGCTCTGCACTAGGGAGGGTTAGGCCAGGCATGTGCTGGAGACTGGGTTACTCACACTAAGACTTGCCTTCCTAACCAGAAGGGCACTTTGCTTCAACCTTCAGAGTTCAGCTGCCCCAGGCAATTCACTGCAGTCCCAAAGGAGCCGACATAAGAGCAGCTTACTCACACGGGAGCACACGCGA--GGCAGCCGGCTAATGGCCCTACTCACAAGC-TCAAAACCCAGATGTAACTTGAGGTCCTGGATTTGGGG-CAAA---TTCACCGCC--CCCCACTACCTTATTAGGTAGCTCCTGTGAA---ATGTTTCTTACCTGCCTCGGCTACAGGGCGCCTGTCCCAGGACTGTCTCCCACACTGGAACCCTATCTGCTCCACCTGATGAAGAGACCCGCTAGGTCTGCTGGCTGCCCTTTGCCAGAAGCGCTTCGGGAAGTGTACTTGAAAACTTAGAGGTTAGTTGCTTCCCCTGGTGAGCACGCGACCTG----GCTCCAG-----GGGTTTCA--GGGGTCGTGGAGTGAGAAAACGTCCCACCAA-CCTGGCTTCCTCTAAGCCAC---------GACGAGGATGGACGTG------AAATGCGCGCGCAGGGCGCTCCACGC-CGCAGTTCGCCCACTCAGCCGTGCCCACCTAC--GTCACGCACCGCGGGCCCTCCCAAATCCTCCTGATTGGTGGAGAGCAAGCACGAGCGCTCCCGCCCCGCTCCCGGGCCCGCCCTCCTGCGGCACTGCCCC-GCCCCCTGGCATACTGGTCTTCCAGCGAGCGCCCCTTCCAAGTTGCAAGGCGAAGGCGCGGGAGCGAGACGG--CCCCCGGGCCCTCCAAGTGTGAGGGGGCACTTTGGCTTCATGCCAGCGCTCTGGCCCTCGCCCCAGGTTTGACAGTGGCTGCCTGCTCTTCAGAAGTAC---AGTCCCTGCTCAGCTCGGCAGCCACAGGCCCCTTACT-CTCC-TCAGCCTTCCAC-------TCGCTACCCA-----GGCTGGGCCCCTTATTGCAGAGCACCCGGAAATGCCCATTTTCCAGGTCCCGCTTGACGCCACGTGCCAGGAGGTTGGTCCCCGAAGACCCACAGTCCAGCACGCGGGCTCTCGAGGCCGATGCTGAAGTGGGTTCCTCAG-GCATTCCATGCCTGGAGCCTCCAGCCCTGTCCGCGGACCCTTC-------CCCCACCC-----------AACTCCTA---CTCTCTCCGGACCCT---TCGGAATTCCCCACACTCTGGGACC---------TTCACCCCCGCCCCGCGCACCCTTGCGTCCCCCTGAACCTTCCTCACACTCCCG-----------AGTAC-TCACTCCCTTG-----CACCAGCGCCCCGAACCTCTCCGCGGGGTCGCT----TCGCGGTAAGGGACCACTCTTAGCAGCCTCTATTCGCAA-ACCGCTGCCCTCCAGGCCATGTGACTGAGC-----CCTCGCTTCC----CGTGCCGGGATGTTC----CTCA--CGCAGCACCT-------CCCCCAAGACACCCTCACGGGACCCTTCTCCCCATCCC----TCGCCTCTACCTCCTATTCTTCCTTCCTTCTCCCGGTAAATATCCTTC----------------CAAGGGCCCTCCTCACTCTCCCATCCGTGCGATCTCGCCTCGGACCCCGGG-------GCCCTACCCGCACCCCCGCGGGCCTCTGCCTAGCCCCCGACAC-------------CCCTCAGCGCACTCATC-TGCCAGACTCCTCACG-------------GCCTTCGCACCCCAG-GCCGCTCACCTCACTCATCTTCCCAG--GCCCCCTGACGCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCGGCGCCCGGCCTCCCGCTCCGCCTCTCCTTGCGCGGCTCTCCCGGGCGCGGCTCCGGGGTTCATGGTGACGAggcggcggccgctccagcccagaggcggcggcggcggcgggagcgggggcgcgagcccgggcCGCCTCTCACAGAgcgcggggccgggcggcgggcgcgcccaggcggcggcggcgagcgcccccccggcccgcggccccgcgcgccccccgcgccgcgcgcccg---------tgcgcctggctgccggggggccgggccggcgggcggccgccgcgccgcgcACCCATGGACGGCCCGGCCATCATCTCCCAGGTGACCAACCCCAAGGAGGACGAgggccgggccccgggcgccggcgAGAAAGGTAAGGAggggcgccggccgggcgcaggccgggggcgTGGGCACTCCCCGCGCGACCGGAGTTGGCTGCCGGGCGCTGGCGCGGGC-TGGGGGAGGGGTGCGTGGGTGCGGGGTGCGCAGCAGGGAGGCGAGCGGGCGGGAGGGGGAGTGTGCCCGCGCCGCTCGGGGCGCGGGAGGGGGCGTGCGCCTTTCTCCGGGTGGCGGCGATGTGGGGGTGACCCTGCGGGCCAGGAGTTTGTGTGTGCGCTCACGCGACGGAGAAGTTGTGAGCCCGCGTGTGTTTCTGGCAGGTTGGAAGTGTGTGTGTCGTGTGTATGCAGTGGGCAGAGGTTGGAAGGCTATGTGTGCACTTAACGGATAGGTTGTGAGTGTGTGTGTCTATCGGATTACGTGTGTGTGCACTTGTGTGTGTACACTTGCATGCTGTGGGTATGCACAGGCCAACTGAGAGATGGTAAAGGTGTG-------TGAGCA-----CCGGTTTTCCTGACAGGCTGTGAGTGTGCTTGTGTACATTATGT--ATGTTTGTGTGTACCTGACCAGGAGGTTGTGGAGTTGTGTGTGTGTGTGTGCCTGCATGAGCCCGAGCCTGCAGA------GTTTGTATGTGTTCATTCCCTACAGAGTTTGTGTATGA----------ACATGACTGTGAGCTCACAGCACTGAACTGGCAGGTTGAGTATGTTGTGCCCATGGACTGGCAGGGTGGTGTGTGTGTGTGTGTGTGCAGTTACACCTAGGAAGACTGTGTGTGTGC---TGTGCCTGACCATGAGCCTGTGTGTTCACCCGACAGTGAGGCTGTGTGCTTGGGTGT-----GTTGGTTGCGCAAGTGGGGTGG------GGGGAGCATTGCTG--------------------------------------AGCTAGCCCCCTGCTTGACTCTGCTGTCTCAGTGGCA--------CCTGTTGGG---TGCATCTACAGGGTTTGGTGGCCCCTTTAGGG--------------CCCAGCTC-TAACGGACCCTCGGAGGAGCCCTTGGGTGCCAGGTGTGTCCCTCCCGGGAGAGCCGGCACGGTGCTGA--AGG------------------ACCTGGTTTGATTCCAGCACATTTTGGCCCCATCACCCACCCCTCATTGCT-----CTTTTCCTTTGTGTCCCTGCCCCTCTTGGAGGCCTGTTGTCCCCCTCTCTCATGAGCCCTG-GTTACTGTCCCTCTAGTAAGCTGGCCTGAGCTTTGGACAGTTTTGAAGGGCCAAGGAATCTGGCTTGTTTTGTTCT-GTGACTAAATCTTCCTGCTGTGTGCCTGGCAAACACCTGCACTGAGGTCAGGAGCAGCCCACTGGGATGCTCCCCCCTCC---------------------CCTCTCCAAGCCTGGCCTTTGACTTTGGCAG--------AGAGTCAGATTTCTTAACATGTGTTACTAACCTTGCTGTGCCAGTTGGGTGAGGTGTGCAGCTCTGCTGAGGA-----GTGGCATGGGGGTGGGGGAAACACTCCATTACCTCTCCCCAGGCAGGAATCCCTGGGCAAGCCCACCAGAG----TCA---------------CCCCTCAGATTGGCGATTTGTCAACTCATTTGCAGTTTCCATAGACTATAAACACTGTGTG-TCTGCAGACTTGTTTTCTTTTGTGTAAAATT-AGAAATCAGACTCCCCCCAGGCATGTTTCTGTGCCTTACAGAGGGGCTG---AAGCACTGGAGGAGGCTGCTCCAGATGGATCTCCATGTCTCTCTGGGGCCCAAGTGGGCAGCGCCTTGCTTGGTCTGGCCTTCCTGTTGCTGGGGCTGTTGGTTCCTGGGGCCCGGGCCTGCTGTCCCTGGGCTGGGCATGTCCCCTCAGGGACAGTTTGCTCGGAGGCA----TCGAGGAGATTTGATGCCTCTGCTTCTCCTCCAGTGTGGATTGAGTGCTTTGTGTGATGCTGTGCCAGAGAGAATCCACAGCTCTTGTGATGAGAGGTGTGGCAGAAAGCAGGAAAATGTTTGTCAGGACTTCAGCCTTCCTACTGCTCCCCATCTGATTGCAGGAGCAGGCGCCTCCCCAACTTTCTCTTTTCCTCTAGCTCCTAAACTTTTAAAAGTGGAGACAGT-TATCCAAAATTCAAACCATGTACAAAtattcaaggatagtgcttgttctattcaaggatggtgcctgttctattcaaCTTGTTTATGTTTCTTTTCATGACAATCTTGTATTATCTTTAACTGCTTATTTTGTTTGTTTTCTAGCGTCAGATTGGTTGGTTGATAACTGATTAGAGGAATTCCTTACCTGCCTCTCTGGGGTGGGGTCGGTGGCTTCTTGTAGTCAGTGCTTCTTGTTGAAGCATTAAAATCTTAGTTTA-----------GTTTCTCACTTTAAAA---CAAAATAATTTGGGTTAACTATAGTGTGGCA---------------------------------------------------------------ATAAACTGT----------------------------------------------------------------------------------AGAACCTAGCTTTGGAATACTTTGCTCAGATTCATAAACCACTAAACA-------------------------------TGTTTAACAATGTTTCTTGCTTAAGCATGTTGATATATTTAGACAGGCACAATGGATTTTGTTATCACTCAAGTTTTAGGTGAACTCTTAATCGTTTTGATTTTAGTTATGCAGCCTGAAATGT----AAGATTTTGTGATAGGAAAGAAACTCTTGGTTTTAAAA-GTTTACTTTTAttttttgttct-taaaataggattaataatgactgccttttgggtttgat-----------------ttggattaaat-----------gagatgaagtctg----ttaaagactctgcctagtTCACCAGTGTGTCACCGTTGCATATACCTTTCTTTAGGTGGAGGTTTGCAGAGGAAGTAGTAAGTGTGGGCTGGGGCCCGGGTTGTTTGCACAAGTTGAATTACTTTTTGACACTTTGCCACGTGGTAGTGAGCA-------CTCAGACATGATCGTCCCTGTCGGAGGTGTGGCCTGTCACCGAAGATTTATT--TTGTAATCGTGTTTGACTTGACTGATAGTATAAAGATACAGAG-GCAGTTTTCGGT-GTGAGTTTAGCCCAGGCTGCTTTACTATCTGGAAATTtacaaatcaataagaaaaagtcttaacaatacagtagaaaagtggtcaagagatatgaacaagaaaaattgtagaagaggaaatttgaatgtccaataaatgtatgaa-----------atgatgctTT--------------ACTTCCTGTG-----------------------------------------------------------------------AAATTTTTC-----------------------------------------TTCTGTGTCAGCTTGTTTAAACATTGAAATGACTGACAACATTCAAAGTAAACAAAAGTT----------TTGGGAAAGGAAT-----ACTGTTATAAAC--------------------------------CTTTGTGGGAGAATGAAGT----------------------------------GAGTACAGACTTTTTAGAGAATATTTGAGTACTGAATCTCttaga-aacatatttggctgcaagtaatagaaaaccagacttaacactgtagcttaacctggc----agaggtttattcttgtcacatagcaagcagtctggaggtacctgtcgatagct-ttagttcagcaactcattagtatcaCAGCTGACATCACTGTGATTCCCTTAACTTTACTA----CATgttgtaatgtggctgccacccctccaaacaccatagccaccttca-----gggaagggaaaaggtccagctatttt---------taactggaaagcacaaatattgctagggaccacccagcaaacttttggtgatgtttaatcggccagaactgggtcacatagtcactccaaccTTTGGTT-------TGGAC------------GCAGGA-----------AAGAAGATAATTGGGAATAGGTGGGAACGGGTATAATCTCAGCCAAT--CAACAATATTGGTGATACCTGTGAAGTCAGGTATacttctgggtttctgtcctagagaaaaagccttatatatgct-acaggaaacacatacaaggattttcaccaatgtctacattgcttgcaatataaaaaatcgggaacatccta---agtgccaaag---------gattagactgtagtacgtcaataccac----aaaatactataaggcacttagaaagaatgaattaaattagatctaaggatactaacatgcacatttccaagagattttaaagcaggg--------------tgGGGGTAAAGTAATT---GAATAATATAAACAGTGT-GATCCTGTCTGTA-TTTTAAAAAATATCAGACACACAGACATAAAACTGTACATATGTCTAGAGACACACAAAAAATAATC--TGAAAAAATACTTCAAACAAACaacagtgattttccctggggaaaagactgagctggaaagtgagggaactttGCCTTTTTGTTTAAATATTAATGAAAATGTCCTTGTGTTTTACAGATGAA-----TTTTTTTAAC--GAAAGGAAATTTCCCATAGCTATTTGGAGGAAAATAAGTAATTAAAGGGAGTTGAATAATAATAAAACAAAAGCC------TCTCAATTAATATGCAACATTATCAAGCACATATCAGTTCTTGCTGAACAGTTAATTA--------------------TTCTGTAAGCTAATGCATGTCCCTTGATGAGATTTCTGTAGG--------------------------CAAGTTTG-TTTTGGCAGATTTTTG a score=747 s mm7.chr9_random 3702351 48 + 9745104 tgggtgtttttcctgcatgtctgcatctgtactgtgtgcatgcaacac s bosTau2.chr22 39210798 31 - 48330986 TAGGTATATTTCCTCCA-----------------CATGTTTGCAACAC a score=7574 s mm7.chr9_random 3702505 901 + 9745104 ttagtcctaactcag-aacctccagccTTGGAGGTATTGACAGAACTGCAGCTAACAGAAGGTATTTACAAGCAGTACAGTAATCATTTCGGATGACAGGATAGATTGAAAGAAGGTTCAGAATAAcactatgtagaccaggctggccacaagctcagagacccctgcctctgcctcccagaactgggattaaactgtgtgttccatgtccATCTTAAAC-TTTCATTTAGATGAAAAATTAGATGAAATGTAGATTCGTTATGTACTTATAAGAGATCACACAGAGCCAGGTG---------TGGTGGTCTGGACAT-TTGGCAAGACTTTGAATGGCTTCATAGCCAAGATGTTGATAATGA--CCTATGAAGGCTTAGTTCCTTTATGGGGGAGCTGGAGGGGGGGATACTCTTCCTCCAAAttctagccacacccatttctcttcctcgcccccccccccccccttccttagcagactggcaacccctagtctgtcctctgtttccagaacgttgtcatttcagacatgttggctaggcagactcagacagaatgtgatctttcccacaatccgactctctggaaagtcgttcgacat-----tctgggtggtcgttcc-gttgctgctccagtttatatttgacctttttttcatcattgttgtttaatgttcagtggtatgaacgcatcacggtttgattgctcatcctgtctttttcattgctgtgtaatgctcaggggtgtgaacgcaccacggtttgattgctcatcctttcaagatttggggtgttttgactaaagctactataaacac--atggacc--cctttatataaacttaaatcctcaaattccttggggaaatacacacatatcagtacaggtagtgggtcatgtgatacaagtttatttacttttta s bosTau2.chr22 39210829 737 - 48330986 TTAAGCTTAACTCAGAAACCTTTAACCTTTGGGCTGCTAACAAAATTACATCAAGGAGAAGATTCTTGGAAG-----CAATAGTTATTTCAGATGGTGGAACAAATTTGAAGTAGATTCAA---------------------------------------------------------------TTTGATTAA-----------Ctttttaatattaaactttttattcag----------aaatgactcttaagttta-catgcagctgtaagcagtcacactgacccccctacctagttcccactaatgttagcatcttgccaaacctttgtacaaaatcattggtgtggtcaggacacagaattccatcagctcaaagatccctcatggtg--------------------------ccgttttataactacacctagttctcttccattcccactcc--------ttctcagcctgttggaaaccactcgtctgttcttcatttctgaaattttgtcattttaggaatg-tgtatacatggaatcaaacag--tgtgatctttt---ggagttgacttttt------tcattcagcttaattctctggattttcagtcaggttgtggcctatatcagtattt----tcttcttttttattgcagaatagtattccatgacatgaatataccacagtttaaccaatca------ctctttga-----------------------agaacat---------------ctaatcgtttctaaatttgggctattacacataaaactgctataaacgttagtggacaggtttttgagtaaagagaagtcatcatttctccaggaaaagtacccaggca----tgcaattgctggatcatatggtagttgcatatttgcttttta a score=10453 s mm7.chr9_random 3708059 608 + 9745104 gctaaggctttctatcccccgtcccaccccggttgtttccaatgtgctt-tggtcgctcctggaggcatttttattatggctgctttgaagtctttgtcaagtaagcctatcatcttcgtactctggtgtttacatctactgacggctcattttcaccccctctgagatgtcctgggtttccctatgacagagaaattgcagttgaaatctgggaatcttcatgttatgtggggactccctgggtctggttgaaaccttc----------------------CACTTGGCTCCAGTAAAAAGGGG--AGCCCTGCCTTGTTCCTGT---------------------GCTCTCTG-TTGGCCTCTTCTGATGT-ctgatgggcaggggagggagttcagtggccacatggtctttaataagctacaaaggcatgacctcattatctccgtgggtg---ttgaaaaccctgactcttcccacgcctcctgggataccttcccagtcttactgctgtgtcagggtagaagtcttcactggtcatgtggtcaccactcacaTTTCTGGG-----------CTCCTTACCAGC-----------------CCTGCTCTGTCCACGGCCTTCTTTGTC-----CCCACCAGGGCTAGTGACATGTGGATTGTTAT-TCCTGGTGGGAGCAGAGGTCTT s bosTau2.chr22 39215662 616 - 48330986 gctgaggctttctatttcc-----------atttgttttcaatatcttcctaattgct------------tttaccatagctgcttgaaaatttttgtcaggtaattgtaatagctttct----tggtgttggcctcgattg---tctttttttcgttgagtttgagatcttctggctcttggtgtaacaagtgaattgcagttgaaatctggactttttcttatcatgttatgagagtctgtgtcttatttaaagcttcatttttagttggttttctctgacact--gctccagcagagaaggggaaacactgccccattattgccagggagaggtagaagtccaggatctccacttgacctctcctgacaaactgatgggcaggaagggagtttcagctcccacatgatct--------ctgtagtggga----------------gtgggtgaggctaaaaaccctgaatcttcttg-gcctcctctgacacctt----------------ggtaggaatggaagtccaggctagccacatggtcttcactggcaccactgggagagggagggacccattaccagcagttaggagtgaaggtcccttctccccacatggctttctcagccactgccccagcagggtggggg----gtgcctccttataccctggtgggggtggagatcta a score=2183 s mm7.chr9_random 3709002 110 + 9745104 CCGAGGCTTTAACCGTGCTTCATGGGAAGGGAAGGAAGTTCATCTAGAACATTCTCC-------------TAGAAGTCCCTCGATCAACTTTTAGACTCAGCCAAATTCATAGTGAATTTTAA s bosTau2.chr22 39216631 106 - 48330986 ctgggcttttagttgtact-agtggacagattaggaag--------aattatactccatcttcttggaagtagaagtcccctgattaatttttaGACCTATCCAAATT--------GTTTTAA a score=1860 s mm7.chr9_random 3709236 35 + 9745104 GAAAGACTAGAGCTGGAAAATTACCATTTTAAAGG s bosTau2.chr22 39216737 35 - 48330986 GGAAGACTAGAATTGCAGAGTTGTCCCTTTAAAGG a score=2535 s mm7.chr9_random 3709434 65 + 9745104 TTTATTTCAATGTTGCATTAATGAACAATGTAAAATTCAATTTCTCTTAGTGCTTCCAATATCTT s bosTau2.chr22 39216772 65 - 48330986 TTTATTTCAGCAAAGTGCTAGTGACTGATGTAAAAGTCAAATTGGGTTAGTGCTTTGAGAATCTT a score=4821 s mm7.chr9_random 3709668 159 + 9745104 AAAAAGAGCCAAAAGATAAGAATGAATTCAGTCTAAAATCAAATGTAGATCATTAGG------------CCAGCTATTTGGCCAGCTTTGGAAGGGTTAATTCATAAACTCTGGCCTTCACATAAAAATTAAGCTCCAAGGCCTACAGAATCCCAATGTAAATGTGTATTT s bosTau2.chr22 39216848 166 - 48330986 AAAAAGAG-----AAATGATAATGAATTCAGTGTGAAATCAAGTCTAGATCAGTGGGGCTTCAGTGACAACTGTTGTTGAGCCAGCCTTCAAAGGATGCATTCTTAAGCTTTCGTCTTAACACCAGAATTTAGATCAGCATTCTCGAATATCCTGAGTTAGATGTATTTTT a score=4445 s mm7.chr9_random 3710020 290 + 9745104 CTAATTCTCTGTTTAGTTAGTGAGGATGTTCAGCC-----TCCAAGCTGTAATTTTATTTCTCAGTTAAGAAACTCTTCCACTTTGG-------------------GGGGTAAGCATGGAACGG--TATGTATGGATTCAGTGC----------------ACA--------TGGCCGGTGACTTCAAAAGTCTGCCTCCTGCTCAGGCTGCCTTGAA-GTAGGTCTGCGCACTACAGGAAATTGCCTCAGGATG-ATTTG-CTGGAACAGCCC-TGATGGGGAGGAAGCCCCCTTTGACACATCAGGTTCTCAGAAGGGATTGCACACCTTAGATTTTAATTCT s bosTau2.chr22 39217017 329 - 48330986 CTAATATTCTGTTTGATTGGCAAGCAGGTTTAAACCTGTATCGTATCTTTCATTTTGTTTCTCAATTGAGAAA-GCATCCATTTAAGTAGATAGAAATGTCTTCCTGGGGTAAACACAAAGGAGCTTATCTCTGGTTTTAGCGCTGCTGGTTACTACTAGACAGAGCTCTCTGGCCTGTGACTGGAAAACTGT-TCTTCTGTCTGTGCTGCCCTGGACGTAGGTCTGGGGGCTTCCAAAATTTGCCCCAGACTGCACTTGACTGGAGTGGCCCACGTCACAGCGGAAGTCCATATGCAAACGT-------------AGGACTACACAGCCTCAAGTTTAACTCT a score=4776 s mm7.chr9_random 3710359 284 + 9745104 GGCAGGGAGGGAGGAGGGGTCATGTGAAAGTACTCATGGGT-CACTGGGTCGTTT-AGCCAG--ATGGACGGGA---AAGAA-----CTGGCCGTTGCGAGTCTGCACACACAGCTGTCTTTGTACACATCTGTCCACGAC------------TGTTTTGGAAG--AGATACGGTACCGAGGCTGGTGAGCGGTTTCCAGCCACAGAAGAGGGCAACGAAAAAATTCTCTCAGGAAATACCAAAATTATAATATACACCTTAGAACTGATTCTCCATGTCTTAAATT---CTTGCTCAGACATTTAAAGTTCA s bosTau2.chr22 39220066 274 - 48330986 GGCAGTGAAGGAAGGGGAAT-ACATGATAGGGCCAATGGGTTCACTAAGTCCTTTCAGCCAGGAATTGGCAGAAGTCAAGAAACACTCTGGCC-------------ACAAACAGTTCTAGATTTACATATACGTATATAATATGTTTTTCACTTGCTTTGGCAGTAATATATGATGCTAAGGTCA------------------------AGGGAAATGTCAGGATTCTGTTGGGAAATGTTGAGGT-ATAATATTTACCTTGGAACTTATTTTCCAGATTTTAAATCATGATTTATCAGACATTTGAAGTTCA a score=20571 s mm7.chr9_random 3711022 826 + 9745104 TGCCATTGAATG----CCTTTCCTCTCCTTCAATATAGTTTTTTTT----TTTTTAA--TGGGAATATTTA---AGTG----GTTTAACGTGAACTTAAGAGACTGTTTGTCTTTGTAGCTCTGGGCTAACCTGTAGAGGAGTGAAGACTTAGGGGCTGCTTAAAGCTCCAGGTTGGGGTGCAGACA---TTATGCCTGGAATCACAGCAGCAAACACTGGTGGTATAATCCCCCGAG-CTGGGGCCCAATAACAAGCTGTCTTTATGGGTACCCAGGATTATGTAATGCCCTAA-----CAGTGCTTGTTGATTCTGAGT----AGCTGTGTCAAGTCAAAAACTGAAAGGTTTCTTTGTAATTATACTTTGTATTAAGGCTGTTTGCC-AGAATGTTCCCAAATCCCTGTACTGTAGAACACTTTAAAAATT---GAGAAGTGGCTGAACATTCGATGACTGTAGCTATTCTTACTTTTCAAAACTGGTACATAACCAAAGACCGCGGGGCGACGTTCCA--GCATCCCACAGAACAAACCGCTTTACCTTGTCAACATGCCTTG-ATAAATGGAACCTCGTAGGGCCAGGAAGAAAGAGCAGTGTCCT--TCAAACTGCATGTCG-----------------------------TGTATTTTGACCAAGATTTGGCTTTCATGCTTGGCCTGTTGTAAGTTAGTTCTGAGGACTGGGCTTGCATAAGTAAGCCCCAG--------CCATTGACTTGGAGTCCAAAGA------------CTGTCTCTTCCTTCCCTGCCTC--AGGAAACAG---AATATGTGC-ACTTTCGTGTTGATTACAGT-AGTATGTTTAATGACAGTCATCAAGCAATC--CTAAAATCTGTACTGTTGTAAACTCTGTCTAATGTTTAAGCA s bosTau2.chr22 39220378 909 - 48330986 TATCATTAAATAGTATCTTTCCCTTTACTCTTTTAACGTTTATTTTACTATTTTTAAAATGAGAATGTATAGTCAGTGCTTTATTTAAAATTAAATTAGGCAAATATTTACACTTATGACTTTGAAATAGCACATAATGGAGCAAAGGCTTAGGAACCGCCTGTAGCACTGGGTTAGGATGTGGGCAATTTTGTATTTGGGGTCAGCACGGAAAACACTGGTGGCACAGTTCTCTGAAACCAGGGCCTGATAAACAGTGGTCTGTATGGACGCTAAGGATCATGTAATCACCTAAGTAATCACT-CATTTTGATTCTGAGTTAAAAACTGCTTTGAGTTAAAAACTGAAAGATTTCTTTGTAATTATAACTTGTATTAAGGCTACTTGCCAAAAATGTTTTAAAATCCTGGTACT-CAAAGCGCTTTAAAAAGTGAAGAGAAGTGGCTTAGTGTGTGATGGTTGATGCTATTCTTACCTTTCATAATTAGTGTTTAACCTAAGCTTTCAG-----TGTTTCAGGGTATCTGGAAGAACAAACCACACTCCTTTGTCAACACAGCTTGAATAAATGTAGCCTTTCGGTGTCA--AAGTGAAGTCAGTGTTCCAGTAAACATGCATCCTGTAGTCAGCGTTATGTGTGATGTCTCCCTCTGCGTCCTGTCCAGGAGCCAGCTTCCGTGCTCAGCATACCATAAATCTGTTCTGAGTATTTGACTC-----AGTCATGTCCAGATCAGAAACCAATGACTTTAATTCCATAGACCTCCATCAGAGCCGTATTTTCTTACCCCATTTTTGAGGCAACAGTTTAACAGATTTAATTTTTGCTTTGGTTAGAACAAACACATTTCATGTTAGTCATCCACCAGGCATATACAGTTGGAGGAGCTGTTAACTCTGTCAAGGGTATGAGTA a score=3461 s mm7.chr9_random 3712308 96 + 9745104 TCCTTGATTTTACATTTGATACAAGTATAAAGTAAATTTACAGAAAATAAAAATCACCCCTCTTGGTGAAATACAGGTTTACAAAGCTTTGTGAGT s bosTau2.chr22 39221350 96 - 48330986 TTCTTGATTTTTTTTTAAGTTTTTTAATAAGGTAAACTTACATATAATAAAAATCATTCTTTTTGATGTAACCCAAAATTAGaaagcttcctaggt a score=10033 s mm7.chr9_random 3714894 518 + 9745104 GTGCTCTAGGGAAAGGCTGGGCAAAGAGCCACGCC--CTGCCTCC---------ATGACTGCCACGAGTTAAGCTGTCTAAACCtgtctcatttgacact------actttaggatatcagtattgt---ccactgtatggcagaggaaactgagtca-------------------caga----ggagatacgtaactaccctgtaggaaagccaggagttaaaactagtctgtctggctctgaTGTTAAAAGGAAACTTGAAACATAAATGGAGAATACCACAGACACTTCG-GATGTTTGTCTTGAAAGC---------TACATCTCTGGGGGACGCCCCCTCTCACTTTTGTCACA--CGGCAAGTCGAATGGGACACATTCTTCAGCTCGCCCAAGATGACAGACAGCATTCCCTTTAGGGTGCGGTTTCTTCCGTCTGTTTTCTGTATACCGAA--CTGTTTCCTTGATTCTCGCTGTTATCTCTT----------GGCACTCTTCAACTGAGTTTATGAACCACAAATGCGGGAAGTGGGAGACACTAAAATTTATCATAAAAGTTCAAGAATCCTGT s bosTau2.chr22 39226103 565 - 48330986 GTGCTTTAAGAGGAGGATATTCAGAGTGCCATGCAagctgccacttattttatggtgactgtca--agt---actgtacatgtggatctcagttcatcctccaacagccttaagatacagatattgtaatccccaatgaggcttagagaagttaataagtagcttgccTGTATGATCTAGAACATGTAGATATGTCCCTGCCAAACAGTGGCGCCAAGCCTTAAACCA---CTGACTGACTCTG---TTCAAAGGAAATTTAGGAAATATTTGGAGAATATCATAAGCCCTTTGAGATTTACATCTTGAAAGACAGCAACCATATTTTTCTGAAAGATGCTTCTTTCTGCTTCTGCCAGAGGCAGCATATTTAACAGGATAAATTCTAGAGCTCACCCAAGTTGACAGGCCACATTTTCTT------ACAATTCATTT--TCTGTTATTTACATAATAAATTCTGTTTCCTTGAGTCTCGCTATTAACTCTTAAATCTCATCAACACTCTTCATATTCAGTTGTGAACTGTGAATAGTAGAAATGAGAGGAGCTAAAGTTTATAGTGGAGGTT-AAGAGTCCCAT a score=6921 s mm7.chr9_random 3716313 370 + 9745104 TGGGACACTTTCAGTAGGGAAACAAAATATCAAGGAGGCTCTTAG------TCAAGTCCTATTGTACTGGTCAGAGTTCTCCTCTGCAGACCACAGACTCCAACTACATTA-------------------------GAAGACTCAGTGCTTTGTGGACACTCTGG----------------------GCT----------CAGGAAA--TAATCAGCTATGC---AGGGACCCCACCCACTCACC--------ATTCAACTTAGG-GCATCTCCATTACGATGCTGGCGTTGTCC---AAATTAAATGAT----TTC-----ATTATTAAAAATAAAAGAAGGTGATTTCTCACAAGCTCACTGGCTTCTTTC---------------TGGAGAAACAGGGCTGAGATCTTGTTGGAAGAAATCATAGAAAAACAAAATCCTAAATACATAaatcaa-------tcaaccaatcaaccaat s bosTau2.chr22 39226784 475 - 48330986 TGAGATATTTT----AGAAGGATGGGATGCTAAGAAGGTTCTTAAAGATTCTTGAATCCCATtgtattggtcagacttctaaatggcaaaacacagaatccacctaaactattctaggcagaaaggaattagtcaaaagagtttagtggcttgtagaccctctggtaaggccacagaactagatttggctgtttcacagccagaaaAGACATTGAACTATATCTTAGAACTACCTTGCCCTCACTTGTTGCTGGTTCAGCTCAGAAGCATCACCACAAGCGTGCT--TGTTCTCCCTTAAACTTGGTGATCGTTTTCTAAGAATTATTAGAAATAAAAGGAAGCCAGTGCCTGTAGGGCCACTTGATTCTCTTGAGGTATATGCTCGTTTGAGGAGCTGGGCTGAGATCTAGTTAGAGAAGATCTTATAAAAACAAAATCCtagataaataaattgagtcatgttcagacaatgaaataat a score=13751 s mm7.chr9_random 3717642 758 + 9745104 TTTTTTAAAAGAGACAAATATGACAAAACATTAAACTTCTCGAGAGAAGGGTAGTTGGGTAGCTCCAATATATA----TTTGCTAAATTTATTCCCTGTATTTCTC-ATAGGTTTAAATTTTTCATAAGGAAAAAAGATTAATCCTAGACTCTAGTTG---ATTAGCATCAATTTTTAAGGA--CATTACCTCTGATC-GTGGAAATGAATTCCAAAGA-GTGGGGAAGGTGCAGTCACTGCATTTAGTTCATTCTTCTCCTATAGGGAGAGTGTCCAAGAGGCTTGCCGGC-CATTTGG--GATGATGTTTCTGTAAGGAGGCTCAGTTCAGCGCTAACTCG--GCTGTCCTGGGCTCCATACTGGACTCATCAGCCCTCAGTCCTGGTCTTGGGTTTGGTTTTTGGtttctttttttctttttctttttttctttttttctttttttttttttttttttttttttttttttttttttttGGTCAGGTGACCTTCCA----GTGTTGTAAGGGCTTGGTCTGTTCCC---TTGACTTTGTGTCAAGCACCAGCC-------------------TTGAATGTCCCGTCTACAGATGTGCAGTCAGACGGCCCCGAGTGTGTCATCAAGGTTG--GCTTTCCTAAGATGCTGATTCCACCGTGATGTTATCCTGGAGGTTTATTTTAGGAATAAAGGACTTGAAACCTTCGGTCAAGTTCTTTATACTAAGGAAAGCAAAAATCGTATCAGAGAACAAAGAAATGTATGAAATAAAAAGTCAGGAGGAGACAGCTCTCTTAAAA s bosTau2.chr22 39227531 684 - 48330986 TTTCTTGAGAGAGATACA---AACAAAATGTTAAGCAATCCAAGATCTGAGTAGTTGGCTAGC-CCAATATATAGCTGTCTGTTATATTTATTCTCTCTACTTCTCTGTATATCCAAGGGTTTCATAATTTAAAATG-TTAATCCCGGGCTTTAGTTGTGTATTGAGGTAAATTTTAAAAAAAATATCGCCTCCTCTCCATAGAGATAAATTCAACAGAAGCAGTAAAACTGCAGTTATTGAATTTAGCTGGTTCTCTTCCTGAAAGAAGGGAGTTGAGGAAGGTATCCGAAACGCTTGGTCACTGAGCTTTCCAGAGGGAGTGTAAG--CGGCCCTCAGTTGCAGCTGTGCCGG-----------------TCGCACCCCAGTCCTG---------------------------------------------CCACGTTTCTCT---------------------------------------CAGGTGGCCTTCTGCTGGGTGTCATGAGTGCTGGGCCTGGAGCCAAGCTGGCTTTGTGTAGCATGCTGGCCACAAAAGTCCATGTTGGTTTAAAATGCTCTATTTACAAATGCGTTGTCAGATAGCCT---GGGTGTCATCAGAGGAGTCGTTTGCTTGACTCGCCAGCTCTACCCTGTTTCTGT---GGCAGTTTATTTTGAGGATAAAGGAGGTGAAATGTTGAGTCAAGTCCTTCATATTAACCAAAG-GAAAATCGTATTGGAGAACAAAGAAATGTGTGAAATGCAAAATCAGAAGGAGTCA----TCTTAAAA a score=19347 s mm7.chr9_random 3719992 1355 + 9745104 TGGGTACTGAGATGCTAGAGGACAGTTATTTTCTTCCC-GATCTTCTGTATTATTTAAAATGTTTGCATGAGCACGCATCATTCCTACAAAAATAGCCAAACTTTCTAAGGAGCTTGGC---AGGAACAAGATGAGAGGGAGGTAAAGCAAGGAGCGTGTGCGTGCATTTTG-TTGTGTCCTAGGGAACAGT----GGGGAAGGAGGATTTGAAGCTTGGGGAAAAGGGTGGTAGTCAACAGGGTGG--AGAAGACTTGGGGCCTGCAGCATAGAAGTCAGCCTTAAAGGGACAG---GACACCCAGTTCACGAGGGAAGAAGAGATGACTGAAGGTAACGGGAGCTCCAGAACTCCAGGGAAAGAGAACTGAGAGTGGCTATAGTC----Catggcttctggttttcttggtgaaacgggagat--aaccatttg---------------ctgaggatgggaacagagg--------agaaATAGAGACATGGTGAGGTCTCCAGGTTGTGGCCAGCTGGGCTGGTGGCACCAGGTCTGGAGCTATAAACACTGTACTGGC--AAGGAAGCCAAACAGTATT-CTGGGCAGCCGTCCTCTAGAGGAAGGGTGTGCTTGGATCTGTGCAGTGGAGAGGC-----ATGTGTAGGAGACCCTCCCAGGG-GAAAGAATTCAAAATACTCAGGAGAGACACTGAAATGATAGGCCTTCGACTCAGGATGCCAGGGGAAACAGTGAACT--GAAGA------AATACTTCAGAGGAATTTGGAATGTG--TATCCAAGAAGCCAAA-----GGTGCCTAGTG--AAAGTGAGGCTTTAGAGTCTGACGTATCGAGGGAGCTC----CTGAGGACATGGAGGCAGCTAGGGAGCTTAGGGCAGGTGCAGAGTCAAAGGTCAGGTCTCT-----GTCGCGATG-TGGGAGGCTCGGTGGTCTTAGTCAAGGATG-GACCGTTTCCAGATGTGCTTTGGC-------CTTTTGGAGAAGAAAATTGCAAAGCAAGAACTGAGATATTAGCTCCAAGGGTGGAAGAAAACGAGCGCTCAGAAGAGGCT-------------------------------------CTGTGAGCCAACTTCCCCAAGGGAG-----------GCTCT----GGGGCAGCAGCATCACTCCTGA---------CCCTCCCTGGAAGGGCGGGATTAGCAGCT--------GAGGGAGGCGTGGTCTCAAAGGGGAAACCGGATGCTGCCTGAACAGCATCCTCTTAGAAAAGGGGGAAAA--GTGGGGTGTACACGGGTGGGCACACAACCCAAAATGAGA-----------AAGGAGGTTTGAAAAGAAGCAGTGGGGAGCCAGGGAAGGG--GACTGAATGGCAAAGGG----TAATACGAATGCGGGTTTTCCAAAGGAAATACTGAACCAAA------------------------------------------------------------------------------------AGAATTACCCATAATTCCCAGAGTGTGCGACCTTTTCCCACTAA---GTTCTTCTACTGTAGCTCCCACCACCACAG s bosTau2.chr22 39229863 1531 - 48330986 tgtgtggtaggatgttggataacagttattttcttttttgctcttcagtgttgtttaaaatgtttgtatggacatgcatcacttctacaaAAatagcaaaactttctgaagagcttggctgtaagaagaagatgagagggtggtaggg-gaggggaatgtcaaagcatttttcttGACTGATGGAGAACAGCCAGAGAAGAAAGAGAGCTTAAAGCTACAATAAAGAAGCAATAGTCAATTGAAAGACAGGAGGGCCTGGACTCAG--ACACAGAAGTCAGCCCTCAAGGGGCAGTACAACATTCCTTCCAGAAAGAAGGGAAAGACAAGAGAAGATATGGGAGAGTTCCGAGC-CAAAAGAAAGGGAA--AATAATGTTCATAATTAACTCACAGCTGCCAATTT-CTTAGTGAAATCGGAGGTGAAACTATTTGAGTGGAGCCAGGGTCTTGAGGATAGTGGTGAGGGTCTCCAGTAGGATTGACAGTAGAAGAGAGTCACTGGGCTGTGGGCAGTTGAGCC-----CCCCGGG---GGCCTTAATAAAACT---CTGGCTTAAGGGAACCCAGTGGTGTGGCTGGGCAGCTCTCCTCTAGGAGAAAAGTGCACTAGGTACCAGGCTAGGGGGTGGCTCGGGAGGCGTCGTAGCACTTCAGAGGATGAGAAAATCCAGCATACT------------------GATTGACCTT-AATCCAGGATGCCTGGGAGGAGAGTGAATTACGAAGAGTACCAAGGGCTGGGGATTTATTTGGAATTTGGACATCCAAGAAGCCAGAAGACAGGTGCTCAGGGTCAGGGTGGGTTTTCAGAGCTTGACATCTTATGGAAGATCTGCTCAGTGGCCGTGGG----------------AGGACAGGAATGGTCCCAGAAGTTGGGAGGGTCGAGGGTTGTGAAACTGGGAGGTCCAGTGGTCTTGCTCATGGATGCGAGCATTTCCCAGGATGAT--GACAGGAATTCTTTTGGAGAAGA---TTTTGAGACAGGTGCTGAGAGATTGGGTTCATGGACAGAAAGACTC-----CTCAGAGCAGGCTTGAGGGAGGGAGCTGGTAGACCCCTGGTCTGGAGCAGCTGTGGGCCCAC-------AGGGAGCTGATTGACCTGCTCTCCTAAGACCAGGAGCCTGAACCCCAAGAGCAGCCTCCCTTCATGACTGTG-GGGCTTTACAGTCCAAAAATGGCAGAAGGAATGCTCCAGAAAAGAAG---GAATGCT--CTG--CAGACGTTTCTTAGTGAAGGGACAAGACCGTGTGGTACGGGTAAATGGGTAAAAATATGAGAATTAGGGTTCTAATGAGAACGGGGTCAAAAGAGAAGCAG------GCTAGAAAGAGGAAGGCTGAGCTGCAAAGGGGTGGCGATTTGTTTGCTGGTTTCCCAAAGGAAATGCTGAACTATATGTTTCTTTTTCTTATCACAAAGCAATATCTGCTCACTGCCGAGAGAACAAAAACTACAGATAAGCAAGAAGTAAAAACGAGTAAGAGCCACTCACAATCCCTGGGTCCTG-GAGCTTTTCCCATTGACATGTTCTCCC-CTCCTGCTCCTGCTGCCGCAG a score=10073 s mm7.chr9_random 3721385 860 + 9745104 GTCTCTCTCCCTAGCTGAGTCTGGGTGCTCGCCACAGCCCCACTTCCAACATGTCTGTCCTTTTTGGGCAGCCACAGGCATCTTCCCAAGGCGCCATTTTCCTTGGTCACGTCTCTGCCCCGGTTCTGTCATG--------CCGTGTCCGATGTC-------------AGCCAGAAGCCCCCTTGCCTTCC---------------CTCCTGCCTTGTTTCAGAGCTGTCTGGTTCTGCCAAGGTGCCTTTTCACCTCCTACCCCTCACTTCCCCACAGCCTCACTCTGGAGTCTCTGTACTGTGAGTAGGATGTCTGTC-TAACAGGGTAACCGCCCCTACCCAGAGTGTCCT-GTTACCAAGACCCCACAGCCTGGTCCAGCCCATTCTGAC----CTTTGCCCTCCCAAGTTCTCAGCTGATCTCTCCTTCTGGGGATTT------------------------------------GCATCCTTTAACCATCTGGGTAGGAAGCACAGGGTTTAGAGACGAGAGGAACCTAATCCCCTGATCCTACTGAGGAGGAAGGTTGGGAGGCCAAGGAATG---TCCCCATGGTCAACCAGCAAG------------CCAAGATTTAAGCCCC-ATTTTCAGACCTGAATGCTACTTGCTAA--TGGAAGTTACCTTTGTAATTCGTCTTCCTACCTCCCAACCCCCCATGCCT---CAGGAAGTCCTGGAGGCCCAAAGCAATGGT--------------ATACATCAGAATCACTGGAAGTAATTTCTGCCAATCTAGACAG-------TCTGTACCTAGAGGGGACATAGCTGGcctgttgtctttgcctc----ccatctgtaggagctctgagattaca----gatgtttgttctgcccc------gtcaggcttctatgtgtgctctggggatctgaactcacgtccttgagcttgtatggaagtgttttaccctctgagctgacttctc s bosTau2.chr22 39231431 923 - 48330986 GTTTCTCCTCCTAGCAGAGCTCCCAGGCCGGCCTCCTCCCTACTCCCAGCCCCCGCATCCT------GCCTCCATAGCCATCTTCCCCAAACACCCCGTTCCT-----GCTTCCCTTTTCGGGTTCTGTCATATACCACGCCCCTCTCTGGCTTTCCAGAGCTTCTGTAACCTGGAGCCATCTTACCTCCCAGAGTCATTTCTAAACCCTTCCCTTTACTTAGACCTGCTTTGTTT----------CCCTCCCAGCTCCCTTCCCCGGCCTCCTCA-------ACACTCGGGTCTTCAT-----------GATGCCCGCCCTGTCGGGCTGGCCGCCCCCAC----ATTCTCCCAGTTGTCAAGGCCCAGTGCCCTGCTCCAGCCCAGACTGACTGATCTTTGCCTTCC-GGGTGCTTGACTGACCGCTCCTCCTAGGGCCTCATCAGTTCTGTGTCAGTTCACACTCAAGTATGACAAGTACACTCTGATATACTTAGAAGgaagcacaggatttagagctgggaggaaccttggttcctgatcttattaagagtcaagg----gaggccaagagacaagcccccgaaagtcaaccagcaagttgttcatggagctgagactggaaccctgattctcagacCTGAACACTCCTCACTGAATTAAATACTGCTTTCTAAATAAAGCTTTT-----------CTCTGATGCCTGGACATGAAGCCCCagagacgcaaagcagtggatatcagtgatgagaatatatcagactgctcagaatccaga-ctgctacgcctgatagggggagaccctgattcagtaggtacaggataggctcggagtatctgcattAAAACCAAATAAACAAAATCAGGATCTACATCAGGATCTCTGGCTGATCCTAATGTAGAGAGCCCTCAGCGCACCCTTTGAGAAACAGAGCTC--TTTCTTGTCTTTG---------GTTTTGCTTTCTTTGTTAAGTTCTC a score=19883 s mm7.chr9_random 3722368 1182 + 9745104 CACCACAGAAGCAGCCCTGGCAAACCCGTATCTAGATTCCTGTCCCACATGTGACAACCATAGCTCTGGGCAGC-ACTTGTGAACCTTCTCAGGCTC-ACACCATCCTGGCTCCCAGGTTTTATCTT------ATCCACTCTCTGATGTCCCTCAGAGCCAAAAAAAAGTGTCTGTCAAAGTACTTTCAGGCT-TAATCTAGCAAATATTGAGTAGAGT------------------TCTTGTTGGTTCCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagCATGCCAGTGGTCTACAGCCAAGGACACCCAAGTCAAGCAGACCTG-------GCCCAGA------AAGTCTTGG---------------------------AGGAGATAGGCTCTGTGTGGTGACTGTG--CAGTGCCTCAGCACTGGTAAACTAACTGAGTTTATATCC------------------CAACGTTCCCatttgacctcccgctgcctctttttcctcatctataaaatgagaataaaactcatta--aagaccatcacagttat----tataaaaataaaaATATTCCCTTCCTTCCCGGGATGGACTAT--------CAGATCCACACACACAAGGC------------ATTCGGTACGTTTCGAGTATTCCGTGAGGGCTTGC---TGTTATGATTGTTTCGTGAAAACCGTGA-GGAACGAGGAGACTCCAGAGAACACTCTGCTGCCGGGTACTGGACGGGAGGTTATCAGTCCCTGCCTCATTGCATGAGCACACATCAGAGGAATGACTTTCGGTGTGGTAACAGCTCTTCACAGCACTG--TGGACCGCCGAAGACAA-----ACATGCTAGGTATTTGCCAAGGAGAAGGTCAGGCCTTGCATAATTTAAGAAACACACAGCCTTTCTGCACTCCGGGGCTTTAATAAGTTGGCAGTTATATAACGGGCTGCAACAGTGCAGACAAACGAAGCCAAAGATGGGGGTCGGGGTGCT-----------------------GGGGCAGAGGCCATGATGGACGAAGGGCAGGG-TGCAGCT--AGGTCTCGTACAGTGTACATTAAGGAGAT-----------CCAGTGCTTCCCATGCTGACGTATGTGTTAG--------------CCTGGTGGTCACTGCCAGGCTATTACTAACGGGAGGTTTGTAAGTTGGTCTTAAATGTGATAGATTCCCAGTGCTTCCTTTCTCCTTGGTAATGTTTGTAAGCC-AATGTAAGATTGCATCACCGTGTCAGAGTGACAC s bosTau2.chr22 39232397 1283 - 48330986 CATCTCGAGAGTAGGCTTGG-------GTAGCCA---CCCTGTCTAGAACGTGACAGCAGCAGTCTGGTGCTGTGACCCGTTCACCTTCTCAGGCCCCAAACTGGCCTGGGCCCAAGCGCCTGTCTTCCTGATGTGCACAGCCATTTGGCCTCAGGAGCCAAG-----TTATTTTTCAAAGTCCTTGGAGGCAATACCTTGGCAAATGTTGAGTGTAGTGGAATTCTTTGGGAAGCATCCCCCTGGCCCAGGGTGTTTCTGAGCACCT-TCTGTA-GCGTGGATGCCCGGGC-TCTGGG-----------------------------------GCCTGCCAACTGTCTGTGTCACAAGGCATCCATGTAAACCAAACCCAAGCGTATGCCCAGGCTCTCCAAGCCCCGGCACATGCAGCCGGGCCAGGCTGGCAGGAGGAGGAGCCGTCTGCGCGGTGAtgagggccaggctctgggcac--gccgcctgcctgggtctgtgccttgtatctacaatttctagccacgtgacc-tttgacatccctttgccgctgtttcctcagctatagagtgagagtataaattactataaagttaattataattgtattacaaaaaaataaaaagaattcctaccc-cacaggataggtgatgaaggtaacaaattaatgcatgaaaagctcttgaaacagcatttggcacatagtaagtgttcagtaagggactgcggttattatAATTATCTCACGAAAACTGTGATGAAATAATGAGACTC---ACTGCTCTCCACCGT----TATCAGTCCAAGAGTTATCAGTCGCC-CCTTGTTGCATGAGCATAGATTAGAGGAATGACTAAGAATGTAGTAATTGCTCTTCAAAATGCTGCCTGGGCCCTCCAAGACAATTAAAATATGCTAGGTATTTCCTAGCAATAAGGTCAAGCCTTGCATAATTTAACAGCTCTACAGCAGTTCAGCATTTTGG--TTTTGGTAAGGTGGCAGTTATATAACAGGCTGCAACCACGCACATGAGCAGAACCCGAGGTGGGGGAGAGGGTGCTTTGAAAAGATGTGCTTAAGCACAGGAATGAAGGGTGTGATGGACGAAGGACCTGGCCACAGCTGCAGGCTTCAGAAAGTTTGGGTCTGGGCGATGGCATACACGCCCTGTG----CCATTTTG--GCACGTGTTGGCTTGAAAAACATCTCCCGGTGTTAACTGTCAACCTGCTGCCACTCAGAGGTATGAGATTTTGTCTTGTATTAGCCATGTTGCAGGTGTTTCCTCAATCCTTGGTAATATTT-TAAGCTAAAAGTTTGATTGCATCAATCTCT-AAAATGACAC a score=15185 s mm7.chr9_random 3724436 634 + 9745104 CAACTTGGATTGATGTCAAAGCGTAGCCTTCCTGTGTC-GCCTGCTGATCTGGCCTCCATGGGTGCCTCAGACA-AGTGGTGCTCGTCTCCTGGTTGCAAGCATGGGAGAGGTTAAG------CTAGGAAGCAGACGCCAGTG-TTCGTCTCTACTTGGAGGCGGGGGGGGGGGGGCAGAAGATGTGAGCCCACAGCACTCACCAAGTGGTCTCGTGTGTTAATCACAAGA----TCCTCAGACCACCCCGTGTGAGTCAACCGGTACCTTTTGAGAAGGGATGGGCTGG--TTTACATAAACTGTTTGCAGTTACTCATACCATAAAGCTCAAAATTTC-AGAAACCGGGGAGCTGGTTTATTTCTAGAACCATCTGTAGGGTAAGATTCAAGTTCATATCCAAGGAGTTGCCAGAGCAGCTCAGCGGTTG-CCAGGCTTTTGGAAGA-GATACTGAGACAGAGG---GTGGGGTTCTGGACTTGGGGTAGGGCAAGTGAGGGGGCTACAGCCCACCAGGCCATGCGGGAAGTTCTGCTCTGCCTGCACGCCATGAG----CTACCATCCCCCTTAGCAAGAAACTGCCGGAGAATGAATTAGTCCCTGGGAATGGG-GAGGTCCAAAATAGCTTTTTGGGGGTTGAATTCATAATTTT s bosTau2.chr22 39233734 635 - 48330986 CAACTTTTATTGTTGCCAAAGTATCCCCTTCCTGTATCCGATTGCCATTCTGTCCTTCCTTGGTGCTTCAGACGTAGTGGTTCCATCCTTCAGATTCTAAGTACAGGAGAGCCTAGGAGGGTGTTAGAAAGCGGATGCCAGGGGCTTATTTCTGTTTTGGGGTGAGAGATGCTAGTCT-----TATGAGTCC------TTCAC-AAGTGATCTCATGTGCTAACCACTAAAATACTTTTTAGACTGCCCTGTTTGAGTTGTGCAGTATTTCTTTAAAAGAA---GACTGACATTTAAATAGACTACTTGATGTTTGTCATAACATAAGGCTCAGAACCTCTAGAGACTAGTAAGTCAGTTTGTTTCTGGAACCGTCTTTA-GACAAGGATCATCCTCATCTCCTCTGAGGACCCAGAGTAGTTCATTGGTTGCCCACACTTTTCAGAGATAATGCTCAAACCAAGGTCTTTAGAGTCATGGAT---GGGGAGAG-AGTTATGGGGACTGCTGTCAGCCAGGCCAGGCTGAAAGCT-TGCCTTAGTAGGGCTCACTGGAGAGCCTGCTATTTGCCTTAGTAAGAAGCTGCTGTAGAGTA----GGTTCCTGGGAATGAGTGAGGCCCAGGAAAGCCTTGTTGGATGGCAGTCTGTAACTTT a score=20957 s mm7.chr9_random 3729513 1064 + 9745104 TGTTTTCAGC--TTTGAACAAGTTTGATGTGAAACAAG-GTTTTCTCTCATTTTAAAAGGAAAAAGAA-----GGATAATTGTAGAAGGCCTAAGCTTTGTTGA-CAGCAGA----CTCAGAACTGTACCACCCAATGGCATTTGTCACTGCAGGCATCC----------------------------------TCAGGTCCAGGCTTGCTGTCTCGAGGCCCTCTGTCACAGGATGGGCTT---------TGGCAGGTGGCCAGGCTGTCACCTGCCAGGGTCATACCAAGTTCCACATGAGGTTACAAGGCTGAGCAGGATCATACACTTCATAACAGGAAGCGAGGGAGGAGGAAGCAGGAAGGAAGGAGACGAT-CCCTTCAGGGGTGGA-TTAGAAAGCGATTTGCCACTTTGCTGTTGAGACTAGGCCAGAGAAATCCGATCTGGGACG---CAGCCCG-TGACCATGGCATTGCATGGCCCTTGAATGCCTTTGCTCTCTGAGGCT-------TGCCTGGTCCTATGTCCCCAAGGCCAGACCCAGATA-CAGAGGTGACCGATGGACACAGCACTCACGTCCCTCCTGCGTGTTGGA--TGGA-TGTG-------------TTTAT--CCTGACCCA--------CCCAGGAGCACACAGAACGGAGCACATTTCCTTC------TAACCTGCACCCAGACGGGGCTTTCTCTCTGTCCATCATCCTTGCTGGAC-----------------------------------------ACCAATCCATGCCTTGACTCG----CTGAGTCCAGTTCAAATGGGTCTCC--AGACCATGA-------------AAGAAGCCCGTTGTTTGCCTCT---------CTACTCATG----------CTGTCTGAAGGG---------CCTTTCTCCTCCTACACACAGATGTGCAGAGCGGCAGCCCAGGTGAAAGCTAGGACACAGCTGTTCGTCAAGACC--------TTAAAGCTCAGC-TGTCCTCTCCTG-TCCATGCTTGGAGTGGCAATTTATGTAAGAAACTCTTACA-TTGAGCTCCTGATGGAGGAAGGTCCTGTATTTCTAATTAGTC---TACCAACGTGTTTA-------ATTAGTCTTTCTACGTGTAAAACATAATATCtttttttttttttttttttttttttttttttttttttttAGCTTTTAGGTGGTACGTGACTTTCAAAAAAAAAATTTACCTGTTTATTGCAGAAATAAT s bosTau2.chr22 39235867 1222 - 48330986 TGGTTTCAGCGTTTTGAGCA-GTTTGATTTAAACCATGTGTTTTTGTTTGCTCTGAGAAAAATGAAAATTAGTGAAAAGGAGAAAAAAGTTGAAAGTTTGCTCATCAGTGGGAAATTTCAAGCCTGTGCCATCCAA--GCGTTTGTCAGCACAGGCATCAGTGGCATGGTGGATGGGGGCACAGACAGTCTCTGTCGGATCCAGGCTCTCTGTCTCCAGGCTTCTTAGCATGGGACAACCTTCCTGTCTGTTGGCAGGTGACTGGAGCATCTCCTGCCAGAGTCATACCAAGTTTCAGATGAGGTTATGAGGCTGAGCAGGAGGGTACGCATCATAACaggaagggaggaaagagga---aggaaggaaggaGAAAATCCCCTTCATAGATGGATTTAGAAAACGATTTGCCACTTTACTATTCAGCCAGCTTCAGGGAAATTCTATCTGAAATGCACCAACCAGCTGAATACAGCATCAGATGACAATTCCACTTCTTGACCATGTGAAGCTGCTGGTGTGACTCAACATGTGTCTGT-CGGCCAGCCCCAGGGAGCAGGGGGTACACCTGGGTATCCCATTCCCACCCCGTATCCAGGTTGGAGTTGGAGTGTGGTGCTAAGGGTTCTTTACGGCCTGACCCAGTGATCTGTCCA-GAGAATATAGAATGGACCAAGTTCCCCCCAGCCCACACCCCTCATCCAGGGGGAGC---CTCTACATCCATCATCACTGCTGCCCAGAGGTAGCTTATCGTAAGTCTGAGGCCTGTCCCAGTCCAGACTAATCCATATCTGGGCTCTCTGCCTGAGTCTCGTTAGAACTGGACCACTGAGACTATAGTGATGTTAGTGATAATCAGGCAGCTGTCCGCTTCTTACACCCTACTCCTCCTGTTGAGCAGCCCTGTCTGAAAGAAGTGATTGCTTTTTCCACTCCTACACACAGGTGTGCAGGGCAGCAGGCCAGCCGTAAGCGAGGACACAGCTGTCTGTGTTGACTGGTCTGCATCGAAACCCAGTGCGTCCTCTTCTGCTCCAGGCCTGGA--GGCCATTTCACAGGGGAGCCATTGCACCCGAGTCCCAGCTGGGAGGACCCCTTGCACTCTGAGTTAGTTGTGGTTTAACCTGTTTGTGGAAGCGTTTTCCTTTGAACAAGAAGAACA------------------------------------TCTTTCTTTTACCTTCCAGGTAGTGAGCCATTTTT----TAAAATCTTGATTGTTTATTATAGAAGTAAT a score=38180 s mm7.chr9_random 3730896 1276 + 9745104 GTAGTTTTACTTT--AAGGTCCCCAGAACAGAAAGACCC---------TCAAAC----TTGAGTCCTTCCTGTGGTG----TGAAAGGTCAC------CATAAACAGCTCATTTAAGTTGATCAGCTGCGGCTTCCATGCCTTTAGAGTATGTAAGGTCGTCCT----GTTTTGAGAGGGAATGGATGATATTAAAAA-------AACAACAACCACCACT------ACCACCGACTGGAGTTTGCTTGCTCGAGAGGCGTATTTTAACCTTGTCCCCTGATCCTTTGCCATC-GCACCATTTTCAGTGGTAGCTCTCGGAC-ATCTTCAGTGCAAAAAAAGTTTGCATGGGAATGAGAGCAGCTGTGAGCGTGCAGGACGAAGGGTACGGCCTCCATTTCCTGTGCAGGGTGC-CGGAACATCTAAGGCTAGT-GCCGACCAGCCGAGAGGGAGGAAAGGGAGATGGGGGACAAACAGTTCGGTCTGTTTTGCCAGCATGTGCCACCAGCCGTGGGGCGGACTCGGCCGCTGCAGGACACAGCTGACCTTTGGAGAGTCAGTGTCTGGGAGAGGCTGCCCTTTCTCAGGACAGAACACAGCTGTTGTTTAGATGTCAGAGGCCAGTTAGTGCCTGAGTTTAGCAATCCGCTCAGGATGTGAACTGTTTGGGAAACAGTGTGCCTGTAGATTAACGGAGGGCCAGGGCAGTACGAAGGGAAGGAATCTTTGTGCTCTGGACAGGTTGTCCTGTAATCCTTTGCAGAAAAATTAACACTTAGCAGCCAGTTTTAGAAGGAATTAAGAGAATGCACAAAGGTCAGAGCAGGTGTGCAG----AGGTCAC-CTTCC--TGAACCCTGG---------------------------CCAAACATGCTAACTCAAATTAAAATTTTTAAGGCAAATATTTTGACTCCATGTCCAGTTTGTG-AGTTAATTCTCCAACTTGAAGTTATCCCTCCAGAATACC----CTGAACTGTTTTCTTTC----TGGCCATTTACCCACCCGCCCATCCTTCTGAGCGCTTAGCATGTGGGTCTTTTAATGGCCAGCTCTGAATTCTTTC----------------TGTTGAGAGGAATGACATAGTA------CCTTCATTCTCTTACTG-------TGTTGTGAGAAAAGTAGGAGATGAGGCAG---------GGAGACCCTAGCAGAGTAAAAACAGCT-----------GCCAGGCCAC-TCAAAGTAACTTCTTGCCCAC---TCG----TAAAGGAAAAATGAAGGGTAGATTATT---------------------AGTTGAT-------TTTTAATTAATTTTAAAACACACACCTTAAGGTTTGTATAAGTTCCAATTTATATTGGTATGCAAAGTATCACATGG-TAGCCAACGTGTAGTATTAAATCAAAAG s bosTau2.chr22 39238237 1404 - 48330986 GTATCTCTACTTTTGAAGGTTACtggagtagaaagaccccgggctatgtcagaaggaactgggtg-gtcttgtggtgaccctccaaagccacatgggctttgggcagttcatttaaat------gct-cagcttccctacctataaaatgggagggatgatccttacagggtgaaggggga--ggatattgtaagaaagtgctggaacagggcctgacacttcataaatatgtaacaaatgTACGTGCGGCTGAGGTGGGTATTTGTACTTTATCTTCTGGCCCTTTGTCATCAGCACCATTTTCAGCAGCAGCTCGAAGATGATCTGCAGTG--AAAAGAGTTTGTGTGAGAACAAGAGCAGCAGTGAGCAAGCAGGATGAAGTCTCAGGCCCCCGCTTCCTGTGCAGGGCGAGCTGAACATTTACGACCCGTTGAAGATTAGCCAAAAGGGAGGAAAGGGAATTGGGACAAACATAGACTGTTCCGCCGTGCCGGCATGTGCCACCAACCGTGGAGTGGACTTC-CTGCTGCAGGACACATCTGACCTTTGGAGAGGCACTGTCTGGGTGAGGCTGCCCTTTAGCGGGACAGAACACAGCTGTTGTTTAGATATCAGAGGCTAGTTAATAACTGTGTTTGGCAGTCAGCTTGGGAGGTTAACAGTTTGAGAAACAGTCCGGTTCTAGGTTTAAGTATGGCCTGCATA----------AGGGAATCTTTGTGTTACCAACAGATTGTTTGGTAACCCTTTGAACAAAAATGAACACTTAGCAGC----TTTAAAAAGTATGAAGGGAACTCATAAAAGCCAGAGCAGATGTGCAGGCAAGGGTCACACTTCCAGTGCTCTCTGGGGAACGGTTTCTGAACTAACACGTCCAACAAATGTGTTAATTCAGGTTGAGATTTCTAAGGCAAATA--TTGACTCAGT-CACAGCATTTGCAGTTAATTCT-CAACTTGAATGTGTCCTTTCAGAATACCTTTGCCTGGCTGTTTTCTTTCCTCGTGTGTGTTAGTTTGCCCACCCTTCACTTTGAAC-CTTAGCAGGTGAGT-TTTTAATGACCAGCTCTGCATTCTTTCTCTAGGCTTTGAATAATGTGCAGAGGAAT--CAAAATAACTATTTCTTCATTTCCCTAGTGGCATAACTGTGGGGAAAGAGGGACGAGAAGAGACGGTTTAGACCAGGAGATCCTGGCAGAAAGTAAATGATTCCCAGTCTTGGGTCAGATTACATAAAAATAACTTCTTACCCACCATTCGATATTAAAGGAAAAACTGAGGTGGTTTTGTTTTTTTTCCCTCCTCTCAGTTCACTTGATACTTTAATTCCTATTAATTTAGAAACATGTGTCTTACAGTTT------------CTTTGAATTGATGTGCAAACTGCTGCCTGGTTAACCAACTTCTAGTGTAAAATAGAAAG a score=4095 s mm7.chr9_random 3735153 292 + 9745104 GCTCACAGACTGAGACGCTGAAACAC-AGTGATTCTTTCTGAGGATCGGCTCTTAAACACGGCAAGGAATCCGTG------ACAGATGTT---CTCAGTTGCTTGAGAGCTGCCACATGACAAGGGACTGTGGGGTAAGGAATTCATACAGACCCAATGTGTCCTCCCTGCCCT---GAAATT---------ACAAAGTCAGTGGAAGG----------------------GTGGGAGATGCGACCCCTCAGTGAGGTGCAGACGGCCTGGGCGT------TCAGGAGAGTGGGGGAGTGTAGGCTATGAGCAGAGCCACAGAGGCTGCGTGGGAGGGGTGA s bosTau2.chr22 39243691 330 - 48330986 gctcagagtcttagccgctggaccaccagggaaa---tccCAGGATCTGCTTTTATA---GACAAGAAAAATGTGTTGTGAACACATTTTTTTCTGAatttcttgagagctactatg-aacaaaggaccatggaataattaattaatatgaatc--aggtgttttccctgtcctctggaaacttgcaatctaacaaagcatgtaaaacaaacatacaaatagtagcatacagaaggccataccttctgtaaagaaGGTAAGGACAGGCTTGGTGTGGTTGTTCAGCAGAGTGAGAGTGAATTAGGTTGGAG--AAGCCA-GGAGGCTGCATGGAGAAGGGGA a score=3540 s mm7.chr9_random 3735445 645 + 9745104 GGAAAG----GACCAGAGCCTCGAAGACTAGC-TTGGGTT---------AG--AGAAAGGAAAGCAGAGAAGACTATGTCTTTGAGCAAAGTGG-GAGGTGAACACCCTAACATACAGCCGTCAATCTGGTACCCAGAAGTTCAGGGCACCCAGA--AGCAGTCAGCCGCCACCCTCC-CTATGACACCTCATTCTCTTCCGTGTACTTGGCAGAGCGCC----TGGGCCACCCGTGAGTTAGAACGAGACCTGCAGATCCTTCCAG---CTGTGGCGTCCTGTGATTGGATGGCTGCTAGA------------AGCAGA-TAGACATT-----CTGTAATGATGCTCTGCTCGGTCAGCCAACCCCATCCCC-TAAAGTTTAGGCTTT-TTATTAGGTGATGCT----------GAGTTCTACATTCAAAGT-------TCATGAGCCATTGCAATCCCCAAATGTCACCTTTCAGAG-CTTGCACCGCGTCCAGCTTCTGAGCCCTTCTTTTGTGCAGTGAGATGGAAGGGATTAG-----------GGAAGAAGCTTGCAAGCTTTCTCTCATAGAGTCCCCAGACCTGCGCATCACAGACGCATCTGAGAAATTACGTCATAAAGTAATACTCGCTAAAGGATGCTTACTTAGCACGTTGGTAATTCTCAGTGAAAAGAAtcttttttaaaaataataattttttaattttatgtat s bosTau2.chr22 39244123 665 - 48330986 GGAAAGATGGGACCAGGGCCTTGAAAACCAGGGTTGGGTTTTTTTCAGTAGCTAGAAAGGAGACATACATAGGTAGCATGTTCGGGTGAGGGAGAGAGGTGAATACTATAATGTAAATGTTCTATACCGGTACCCAGATATGCAGGAAGTCCAGATGAGAACCCCTCCCCGACCTCCCACTGTAAGGTTTTATTCCAGTCACACCCCCTAGAGGGGTGCCACCAAGGCCCCTGCTTCAACTTGAAGGAG-TTAGAGGATC--TCCAGGGTCCGTCACATTTTGTGATCTAATGACTGGAAAAAATTGTTGCACGAACAGATTAAACATTTCCTCTTGCCATGTTATATTGCTGTGTTAGCCAACTCTTTCTTTATAAAGTCTGGATTGTACTGTTACATAACTCTCTTATATTACAGCGCCCATATTCTGGGTGTCAGAACTGTGAGCTGTTGCTGTGTGGTAATGTTGCTTTTCACAGACTGGTAACATTTCAGGCTCTTAAACTTTAATGTTGTG----GGAAGAAAAATGATTGAGTCTTTAAACTGGATGGAAGTTACAGG-----------GGAAACCTTCTGCATGTG--TCACAGATGGGTCTGAGTAAT---------------------CCAGACG-TGCTTGCCT--CATTCTGATAATTCCCAAATGCAAG-----------AAAACAA-AATCTTAAAATTTTATGTGT a score=8518 s mm7.chr9_random 3737374 503 + 9745104 CTCCCTCGCATGCTCCTGCCTCGGTTCCCTTTGAGGCCTCACTGA-------TTGCAGTGACTCAAGCTTAGC----AATGGAATGGTGGTTAGA-GGCAAGCTCCGTTACAGAGAAGATGTGTTTCTTGGTTTTAATTCACCTC--------------------ATCGTGACC-----------ACGTGGGAGCCACTCCAACAGAAAGCTGCAGCTCTCTAGGTCTCTCACATGCCTCTTCTCTAAGAAGCAGACAGAGGCGGTTCAGATTCTCATTTGGTGATGCAATGGATCCA--------TCAAAACCTTTTAACAGAGAGGGTGTTCTCTCAGGAGGACCCAG--------AGGACCCCAGATGAGGCGGGGTTCAAAGAGAGGAGGA-TGGGTTTTTAGCACCAGACCCCAGC---AAGAAGGGAAAGTGCATTGCTAACCCTGCTGGGAAATGAAGGCTGCAGCG--GAGACGCTGA-------GAACAGTGCCGCGAAGTGATGTTGTCTGCCTGTGAGCAGACAGCGTGGTTTCAAGCCACATACCCTGCCCAAACAATGATAA s bosTau2.chr22 39245351 563 - 48330986 CTCCTTGGTATGTTC--GCCTTTGCTGGCTT-GATGACTGGCTTAGACCCCGTTCCAGAAACACAAGTTTGATCTTTGATGGAGTGCTAGTTACACTGAGAGCTCTGTTGCAGAGACAGCATGCTCCTTATCGTTCATTCACTTTTCCTCTTATTAGGGAGAGAAACCATGCCCTGACCCCAAATGCTTCAAAACCATTTGAACACCACTCCATACCTCTCCAAAGGTCTTGTATATTTGTGCTCTGTGAACAGGGCAGAGATAGTCAGTATTCCTATTTATTGATGGAATCAGTCCAGAGAATTCCCAAGGTCTTTTAG-AAACAGGGTGTTCTCTCTGG-GGACCCAGTGAGCAGCAGGGTCTCAGTTTAGAGCTGCTTCAAAGACTTATGGACTGTGGCTTCAG-ACCCGGCCCCAACTTAAGGGGAGGAAGCTGCTTTTC---CTCTGCTGGGAACTAGAGACTACCACATCGGGACTCTTCCATTTTTAAACACTTCACTGAA---ATGTGCGCTGTTTGTTAGCAAACGGCGTGTTTTGAGGCCAGATATCCTGTCCAAGTAATAATAA a score=11324 s mm7.chr9_random 3741282 1061 + 9745104 AGTAATTTTTCAGACATGAGCCTGGCCAGGGCCCCCACCATACCATCAGCAGCCCAATCTGCTATCTTCCTACCTGTAC-AGTTCTGGCCAGTGGCTTCTATCCTCCTGGGTACAGTGCAGCTCTGCCTTTACCCTGAGTGAGCTAGGCAGAGAGCAGGAGAAA--AGAGAGAGCCCTATGTCACAACAGC-AACGCTTTT---------TTTTCCCCCAAGACTCACTGGCCAGTACTGTGCCACA--GTCCCTTGACTGTCAG-------CTAGCGAGAGGT-----------CATTGCCATTCCTAAAGATACGGAGAATTCTGTTACAAGGGAGAAGAGGGCGTTTCATGGGTCCGCAGCCATCAATGTCTGTATCAGCTTATCTTTTAATCTCTCTGAAGCTCA--GTTTCGCTCAGCACCTCCCTAATCTAGGCTGTCCCTTTCAGCTTATCACAGGGATGTCTCATCTGTCCCTGGAATGAGAACTCTTCGAGAAGATCTCAAGGGATGTAGGTAAACTC-AGCACACATCACAGCAGACAGTCTGCCCATCACT----GGTCTATGTAGCTT--CAGTGGCCCCCTGGGCATCTCATTGTTCACAGTGCAAGGAGTTTTGGGGCCCCACTAACACATTATCATCTTAGAGTTTGGCACCAGTATCTCCTTA----ACCTTGGGATCCTTC------CGGA-------------TGCCCTTGCCCATATGTCTGTCTGCTTACCCCTCCTCTTGGGTATGTTATCCCGTTTTGTCTGCTGTCTCTACTACACATCCC-------TCTTGAGAGAGATGAGGCCTTGGGTCAGCCAGTGGTCTCTAAGAAGGGACATTACCATTGAGCAG-------------AGTTGTAACCATGCTGTCCTGTGGCCATGGCACATATCAGGGCTGCGTTTCT----ACATAGAGACCTATTGTCATGACAAGTGCC-------CCTGGGTCTCGCAT--ACCCCCCACCCCAGTGAGTTATCTCA-GTCTTAGATGCATAGCATCAAGGAAGGAAGGC---------CTGTGTGGGTTGAGCTTCATTAATTGCCAACACAGTACTGGTCTATGATGGGCC----TTGTGTGTTTGGGACAGTTTGAGAAGATGGCGGGCAAATTGTATTCTGG s bosTau2.chr22 39247249 1097 - 48330986 AGTTATTTTTCTGGAGGGAGCCAGCCCAGGGCTCATGCAGTATCTTCAGGGATCCAGCCTCTTCTCTTCCCACCTCCGCTATCTCCGGCTGGTGGCTTTCGCCCTTGTGCTTATGAcacggctgca-------tctgaggcaggaagaagcagagaaggagaaagcgaggcaagccctggatcaggaaagcggaagctttctgggaaacgttcagctttatgtctcagtggccaggacgctatcacatggccacctggctgtaagggactctgtgggggaaggttcagccaggcatactgctg-tcctaaagaaac-cagggttcggttagaaagg-gagacgaatatttgatgggtcagcagccatccgtgtctgTGTCAGCAAGTCACTCCATCTCTCTGGCACTCACTGCTTC------CTCCTCCCTGGTCTGGTCAGACTCTCTCAACTGACAGGAGGTGTGCCCAGTTTGCCTTGGG----------CTTTG-GGAGATCCCCAGAGATG--GGGAGACTCGGGCATGGGTTCCAGCAG-CACACTGTCCATTCCCTGGGGGTCTCTGT-GCTTCCCAGCAGGCCCGCGGGCACC---TTGTTC--------AGGAGGTCTGGCTTGCT-CTGTCCTGCCATCACTTCAGAATCCGGCGTCTGTGACTCTGCACCACACCCCAGGATTCTTCGTGGTGTGGAAAGCTGACCTTTCTGCCCTCTGCTTTCTCTTGCTCTCCTCCGCCCTCCACTGACTCAAGCCAG-CCGCCTCCTCTGCTCCCGTGGCTGCATCTTACATTCAAACCCCCAGAGAGACAGCGTCCGGGGT------------------GAGGAGCATCACGGTCAGGCGGAAGCTTCCTGCCCAGTGGTCCCCCCATCAGCCTTTAACCACCTGACACACTGTGGCTTCTTTCCTCACCAGAGAGAGCCCTGTGGCTGGGGCACGTGCTGGGGGAGCCCTGGCCTCACCCCAACCCGCTGCCTCGGGGA---ATCTCAGGGCAGAGCTGCATAGTTCTTAGGTTGCCATGCACATTGAATCTGCAGGAGTTGTGCTCCAGGA------AACACCGTCC----CCTGGGTGGGCCTCAGTTGT-TGTTTGAGACTGTTTGAGATAGGGGTAAACTTCCTGTCGTCTGG a score=11419 s mm7.chr9_random 3743427 911 + 9745104 AAGAAAACAGTAAGAGGACTTGGGGTAGAGCAGCCAGGGCGCCTGCTGACCCTCCTGAGGCCGACCTTCTCATTAGGGCAGGAAGCTGCTGTTGG---GACTCTTCCACCTCCAGCTGGTGAAGCAGTGAGGAC-AATTGTTGGGATCCAGGGGGGAATGTGTGTGCAGATTCT--GAAACTGTAGCTCAC-GTAAAGACGTCCTCGCTGCTGGCACTATAGCTGCTTCTGCAGCGAAACAGCTTTGAACCCT---------GACTGACTTGGGAGTCAGGG--AAGGGATGGGGCAAAGCGACGGACCGTGCAGGGCATGAGAGCTTGCACTCGGTTACT------AGGGAAGACCGT------GTATGTCTCCTCTGTTCCT-----------------TCCGTTGTGGTTCC-------AGGTTATTGTATAAGTTTTAAGACTTGCGGTCAAATGCTAAAGGCAAGCCAGAGCGTCC------------TTATCACAAGCCTGTCTAAGCATCTCACTTAGCAAATGATGTGC----CTCTCACCA---TGAA---AGCCAGGTAGACCCTCTGATCCACACT-------------------CCTCCAAT---------GGATCCTTGC---CATGA-GTGAGTCA-AGACACTGTTGC--------TGCTGGACCAGTATGCTGGCCACGTCCGTGTGCAGTTGCTTCTGGCTGGTGCCACATTCCAGAGGCAGCCC-TCACTGCCAC-------------CTGGTTACCTCAAG------CTCCCTGGTCCTCAGACGT-----AAGCAAGCCA----AGGACACAGCTTTCCTTGCTAGATCCTTACCACATAGCCTCGCGGCCTCCAGA---CTGCCTCAGTCTGCCCAGGGCTGGAGAATGGATAGAAAAAAAAAATCCTTG---TGAAGAATTCTGTAGAAGAAT-GTCAGCTCCCTAGCCTAG------------CTGACAGCAGGACAACCCTGCA-TGTCACT----------ACATATGACATTTACAGCTTAGGCAGGGAAGACAGCCAGGTCAAGGAGAAGAGCCATTCTG s bosTau2.chr22 39248396 1062 - 48330986 AAAAAGGTGGAGGAGAGAATCAGGGTAAGGGGGCTGATCTGACTGCAGGCGTCCCCAGGGAGGCCCTTGTGGTCCACG-AGGAAGACGCCATCAGCCAGGCCCCTC-ATCCCAGGCTGCTGAGG-GGTGAGGGCCAGTTGTCAGCACAAAAGAGGGAATGTGTGTGCACATTCTTTGAAGCCGTGACTCACTGCAGAGGC-TCCTTGTGGCTGTTATTACAGCTGCTGCCGCTGCAAAACAGCTTTGAACCCTAAGGTGTGAGACCGCCTTTGGAGGTGGGGGCAGAGAGCGGGGAGGGTTGTTTGGCAACACAGGAGGCGAGCGA-CGCGTTCCGTGATCCAGGGACGGGAGGAGCGTGGGTGAGTAAGGCTCCTCTGTCTCTTGAATAGCACTTTTAGGTGCTCTGTGATTCTGGATGCAAGGAGAGTGCACACGCCTGGGCCCTGAGGGTCAAAGGCAAAAGCCAGGCCAGGAGGCCCTGTTAGCATGAGTTATCACGAGGCTGTCCAGGTG-CACAGGGGGCAAA-GGTGTGCCACACCCCCACCAGCCTGCGCTCAACCAGGG-----CTCTGAGCCGGCCTAGTGGCATCAGCATGGGGGCCCCCGACAGAAGCCCAGGAGCCCCGCGCTCATGCTGTGGCCCAGAGATGCTCTGGCAGGTCGGGTGCTGGGCCAGCA--CTCGCCCAGTTCACATGTGATTGGTTCTGACAGCCCCCA--------AGCTGGCCCATCACTGCCGCTGCCACTCGGGAGCTGGTTTATTCAAGCAGCACCCACCTGGACTCTAATGGTTGAAACAGAAAATCACTGGACAGCACTGCCTTCCTCCCCAGATCCCCAGCACACACTCTCGTGGCCTGAGGAGCTCCCCTCCAGACTATCTGGGGCCGGAG---GGCCATGGAGTCAACCTTCTCAACCTGAAGAATTCTGTAGAATAAGAGTTGGCTGCGTGGGCTGGCCACCTGTTGGACTGCCAGCGGAACAGCCCTTCGCTGAAACTTTGAACTTGGTCCTGTGACATTTGCATTTTAATCTTAAAAGAAAGCCAGATTGCAGAGCAGAGCCAAACTG a score=19340 s mm7.chr9_random 3745502 746 + 9745104 AACACAGTGCAGGCTCGTCACACCTCCACTCCCAAGGCCTCAGTGCCTC-TCAATGCCTGCAAGAAACAGAAAGAAGTGGAAGAGCCTTCCTCTGCCGTTTGCCCCCACACAGTGCACCACTGCA-CGCTGAGTCTCGT--GACTTTGTTCTG---------------------------GAAACAATTAGAGATGAGATGAATGAACATAAAAGCTGGGAAGCCCGGTACAGGTTC-CTAGTGCCTTCCATTTCATCGACCCAGAGCTGTGGTAATGTCCTATGACAGTAATCACCAATGGCCGACACTGGG-----CTCTTACTG-----------ATACACTTGTTATTTGGAGAATCAAGGGGCCTGTCTTGCTACATAAAGGGA--CAGGGTTGATAGAATTTCTAAAGGAAACCGAG------------------TCTTTTCGCTTTGAACTTGTGGTGCAGATAAT---------------CTCACTGATTTGGTCCTTTTTTTAGCCAGCCAGTTCTCTGGTCAAGTTTTGAAAGGCTTGGGAGAACATGTGATTTTTTTTTTTTTTAAGTATCCTGGAGTATTTTTCCAGGCCTGGGCAG--CTTGTGGGTCAATGCACAGCTATTTCCGTATGTGGGCAGGGTGGGAGA-GCACTGTCAGTTCATGGAGGGCCAGGGCCTGGCGGGCTGAGCT------------------GTAGTTGCATGGAAGGGCTCTTTCCTTCCCTCCTCCTGCTGCTTCCCCCTCCCCCGCCCTGGAGAGCTGCAGATTTGTCTTGCAGACCCACTTGAGTCTACTTGCCTGTACCTGCTGCACGGTATTTAT s bosTau2.chr22 39250111 811 - 48330986 AACACAATGCACTCTAATTAGGCCCCTGTGTGGACGCTTTCAGCACCTCCTCACTGCCTACCAGAA----------GTAGGAGAACCTTGCTTTGTGATTTGGTCAC----------CCTCTGCCTCCCTGAGTCTTCTTAGACTTTGTTCTGCCCACAGCTCCAAACATAGGCACTCAGGAAACATTTAGAGATGGAATGACTGAATATAAAAATTTGGAAGCCAA--ACAAATTCTCTGATGTTTTTTATTTCATAGTTACAGAATTGCCATGTTCGTATCTGCAGGAGATATTAAAAGAGTATCATTGTGATAGTCTTTTCCTGGTTTTCTTTAAATAAGTCTGTTATCCAAAGACTTGAGAAGCCAGTCTTATTTCATAAAGGGGGGTGAGGTTTGTAGAATATGTAAGGAAACTTGAGAGTCAAATGACATTTTGATCTCTT-GTTTTGAATTTGTAGCTCAGATAATGCCTACCAGAAGCATCTCAATAATTCACTC-TTTTTTTAGCCAGCCAGTTCTTCAGTCAAGTTTAAAAAGGCTTGGAAGAACATGTGA--------TTTTTAAAATATCCTGGAGGATTTTTCCAGGCCTGGGCAGCTCTCATGGGTCAATGCACAGCTATTTCTGTGTGTGTGTAGAGTGGGCGGTGCTCTGCCTGTGCACAGAGGGGCCGGGGCCGGCTGTCTGGCCCCTGGGGGGAGAGGGGGAGGGGGTTGGAT-GCAGGTCTCTCTTCTTGCCTCCTCATACCACAG----CTGGGCTCCACTGCAGACCCACAGGCCTGCCCTCCCA--CCCCTGGTGTTTGTGTGCCGGCACCTGCTGAAAGGTGTTTAT a score=24211 s mm7.chr9_random 3746248 1582 + 9745104 CCTGAGCA----------CTGATTCCCTTGTATTGTGAA-----------AGCC------------CGGACTTCTCACATCTA-----------------------------------AGGTGTAGCCGACAGGTATGAACCA-CTAGGCATT-TGGGGAGTAGCTCGGGGGAA-TGTAGACTGTACTGGGGAGGAGTAGCTTTGGAATGCACCCTCC------GGAAAACAGATACCCACAGTTCCAAGTGATACGGAAGCCCGCTGTTTTCCGAGGCTTGAGTCCTGGAACAGGATACCGGTAGGA--AGGTATCCTTCAATCAAAGAG-----AAGATAGTACAGGCTGGCAGGTGGGGACAGAGTTCACAGGCCAGCTCT-ACCCTCACCTGTTGCTTTCC---ACTGTGATCCCTTTCCAAGAGTAGA--ACCTTTCAAGTCGGAGGACAGGCGGATTAGT----TCTTGGGCCAGATGATTTCTGTCCGTC-------CCCAGAGCTCTTCTCCACCCTG-TCTGTGTCCTGGATGCTTCCCAGTAGGGAGTCCGTAAATGGGCTCCCGAGCTTCCTGGCAGCCTCCTGTGTTGTTCTGCTTAGTGGACGACA--------------------------------GCAGGGAGAGAGAGAAG----------AAAGCATCCCTTCTCCCG-CTCCTCTCTGTGACGG-ACCAAAGATCCGGGCACCTGGCA-----------------------CTATGTCAATTTCTGGTGACCTCTCTTTCCTCAACCCATCCCACCTAGGGTTTAAGTGCACTCCTGAGCCTGGtcccagag----------------tcctgccccaagc---cccatctataaatggcacctc--ttga--cctcctcccattcctcattttgagaatgccatctgtttcctgccagaaccctggtggataAGATTCCTAAGATCTGTT-CAGATCTGAAGGAGGGTGAGTGTGTGGAGGGAACAGCCAGCCTCCTGGGGCACCTGCGTTTCAACAGTGCCTCCCTG-ATGGTTTACCATGATCCTGGGAGACAAGGCCAGGTCAAAACA-GACCTCTAGAGCAGA-AGTTCCCAGGATGAGGGAGTAGTCACTGGAACCCTGGTACGCACAAAGTGTAGGA--CTTGATTTCCAAAGAATGAGTAGAAAGAAATGGTGCCCA--GTGGGGTGGGGAGTAAGCAGGGGA----CCACCCTACTGAGGGTG----GCTGCTCACACTGTCCTCTTTGTCCTTG-GACCTTGAA--------CTTACCCGCTGGGTTTT---CCCTTTGTTTCTAACCAAAAACGTCTCTTATACTGACCATGCACAGCTGCTCTGAGGTTCCCATGATGCTGTGCACGCCTGCCTGCTGTGTGGACC-----GAGCAGTCTGTGTGGACCTATCTGGTGTAGGTAGCATAGGAGAGTTGTGATCATAAGCCACCCTCCCCTCGTTGTGATGATGTCATAG--GGAGCCTGTGGCCAAGTGGGTCACCATCTCTGCCTGGCGCAGGCACTGGCAGAA---ACTTCCTTT----CTCCCCTGGAATGTGCAGTGTGTGCGTGTGTGCATACACACAC-ACACACACA----------------TGAAGCATGATCTCAGAGACATCAGATTATACAATCATGTTGTCAGACAGCAGCCATATCCTCCTGA-------------CAGATCC---CCTTGAGAGCCTTAGGACCGTTCACACACAGCCCTTCTAAGAATAGCTGCTTCACAATAGGCTCAAAGGAGAACGGTAAAAATTAAGAA-----TTTTTAAAA s bosTau2.chr22 39251044 1743 - 48330986 cctgaccagggactgaacccgatccccgtgcattgggagcatggagtcttagccactggaccatgacggaagtccCTGAGCTGGTCCCTTTAAACTGTAGGAACCCCAACTCTGGGTCAGGCATAGCACCCAGGTATGGGCCAGGTAAGTGTTGTGAGGACTCACTTGGGGCAAGTATAGACTGTCCCACATAGGGGTGGCTTTGGAGTACACCATCCATATGTGTGAAACAAACACT-----TCCCAGCTGCTTTGAAGACCTGTTATTTTTCAAGATTTGAGTC----------ATGCTTAAAGGAAGAGGAGTCCTCAAGTCAAATGGGGAGCAAAGGAGTGTGGCCCAGCACCCAGGGATGGAGTGCCCAGCCCAGCCCTGAAACTCAACCTTTGATTTTCTGGGCCAGGCCATTCCTCCAGGGGCACACCACCTCTCCAGCTGGGAGGC---TGGGTTAGCCCTGTCTCgtgctgga-----tttgcccctcggatccactcttcaccctcctccgccctgccctgtgctctgaaagctgatt-gtggggactgtatggacgggcccctg-gcttcctggcc-cctattgtgctctt-tacccagtggggagcacccacgggagatttgaggggtgggtggagggggctgggggaaaggcaggtagtgaggccaaagtaatgactctcccgactcctccctgaggcgtcacc--aggtctgggcccctggtaggcagccctctacacagggcacttcgtctcaggttccagtagcctctcctccctcacccctgtggtcccagcgtgtagctgtggcgctgttcctggtcccagaacactggcctgtggttcccctaccccctgcccgcccctctgtaaatggtccctttattaaactctcctcagattacccagcttgagagtgccatctgtttcctgccagagccctggcggataTGGTTCCTAAGATCTTTTCCAGCTCTGAAAAAAGATGCCTGCAAGCAAGGGAGAGCTGGCCCTTTGGGGTTCCCATTTTTCAGTAGTCCCTCCCTGCCTGGTTCCCTGGGATCATGGGAGAGAAGGCCTGGCAGGAATGTGATCCCTAGAACACAGAGTCACTAGGACAAGG-----ATCACAGGGGCCCTGGCAGACACAGACTGTAGGAACCCCGATTTCCAAAGAGTGGGC----AAGTGTGCCGTCCACTGTGTGGAGGGGAGAGGGCAAGGGGTAGTCAGACCAACTGAGGCTGGACCGTCACTCCCAC--CCCTCTCTGCCACTGTGACTCTGGGCAGGTAGCCTCACACTCAGAGCCTTGGCTCCTTCCCTGCCAGC-----------CCCGTGCGGACTGCAC-CAGCCGGGCCCA----CACATGATG----------------GTTGTGTGGTACAGAGGAAGGAGTCTGTGTGGACTAAC--------------------GAGCTGCTGTCATAAACAG-----CTTTTATTGTGACAGGGTCACAGACAGGGCACAGAGCCCCGTGGG--GACATCCCCACT--GCTCATGTCCCAGCTAAACTTGCTTCATTTCATACTTTCCTG---------TTGCACGCGCTTGTGGAGACGTACGTGGCTCCCAGAGTGTCAATTTCAGGATCAAAGCTTGACCTCAGAGATACCAGGTTACAGAATCATGCCATCAAAGAGCCGTGGCAGACTCCAAGCATCTCTGGAATTCAGATCTAGACCTCGAGAGGTCTTAGGCAGCTC-CCTGTGGCCTTTCTCAGAGCAGCTGCTTCAAAGTAGGTCTGAGAGAGGATAAGGGAAATTAAGAATATACTTTTTAAAA a score=3168 s mm7.chr9_random 3748531 254 + 9745104 GTTGGGACTCATGCATATAGCATTCTTGAGTAA---ATCTTAGGAGCAGGGCATAGCAGGGAAAGCTAGAATGAACCATACAAACTCGCTTTCCCATAAGCTAAACGCAGGTGCTCATAGAAAGGC-------TGTGCGCATTTTGGGAGCAAGGACACAAAGAGTGAATTCACTCTGATCTCATCGTGAAGTTCTCCTGTGGATTCAGGGAGGTGGAAGTTAACCTGTAGGGCTGAAACGGAAGCTTGCATACACAGAGGGCC s bosTau2.chr22 39253537 240 - 48330986 GCTGGGAACTGTGCACACAGCA-----GGGTGGGTGATCTTAGGAACATAGTGCTCAGTGGAAAATCAAAATGAGATACGCAAACCAATATTTCCATGAGTTAAAAATAAGCACACA-AGAAAACCCATCCCACATGCACAGTTTGCGAGC----ACAC-----GTAGATACACCTCACGCACATTAAAGAATTTGACTCTGGGGCAAGGGGCATGGAAA-------GCCAGGCACAGAGAGAAAC--GCACGCACAGAAACCC a score=9266 s mm7.chr9_random 3748817 327 + 9745104 AATGGAGCCCTCTGTTCTTAAGGTAGAAAACAAGCAAAG------TCCTCAGTGTGTTTCT----------GAAGAAGTCT--GAAAGCCTGTATG---------------TCTTCCCCA---TGACC----GTGTAGCAGC-AAACCACAAGTGGTTAATGGAACAAAAGTCCCTTTTGTAGGGTCAGAACACAAACACAGCACAGGCTCTGCCTAGAAACCCGCATGAAAGGAAGGATGCTGGGAGCCACCCTCCGGGCTTGCTTCT-GAAAGGCATCACCTGGGAGCACCCGCC--------AAGTGTCAGTCACAGCGTGCAACAATACTCGAAACGTGGATGTG--------TGATTAAAAACTGGCCCATAGAAAGTGG s bosTau2.chr22 39254038 381 - 48330986 AAGGAAAGCCTGTGCTCCTGAGGTGCAAGGCAAACAGAAAGACAACCCCCGGTTTTTCTTTTTAAGGTTGGAAAGAAACTTTAAAAAGCTTTTACTATTCGATTTGCCTACTCTTCCCCACTCTAGCCCTCAGTGTAACCCCTAAACCACAACTGGTTAATGGATCAAAAGTGACCTTTGTAGGGTGAGAACACAAACACCACACAGATGCAGCCCAGAAA-CCACTTGAAAGAAGGGATGCTGTGAGCCGCCCTTCAGGCTCCCTTCTGGAAACTCAGCCCCCTGCAGTGCCCGCCAGGCAGATAAGTGTCCATCACAGCAGGCGAGAGTACC---ACCCTACCTGTGGTCTCTCTTGTTTAAGAAGCGCCTCCTGGAAGGTAG a score=2201 s mm7.chr9_random 3749192 91 + 9745104 AGCCAGCATCATGTGTCTGTATAACCATGTCTCACCTAAGCTACATTTCTGTATTCCTTATTGTGTTATTCT-TCTTCCTTGATtgtgtgtg s bosTau2.chr22 39254554 92 - 48330986 AGTCACGGTCACAAATCTCCGTAATCACGTGTTACATAAATTGCATTTTTACATCTTTATTCCAGTTATTCTGTCCTCAATGTTTGCATTTG a score=22784 s mm7.chr9_random 3750848 1418 + 9745104 GCTAGATATTTTTCTTTATAAAGGAGACTCGTGCTAACTCATTGGTTTCTCTGTTTATTTTGTTAGCCAAATAAAAATCAAGATACCCTTTTTGGCCAATTT---CAAGAAATCTCACAGCATTCCATAGTGAAAACCACACCAAACCAGGGACTTTGAAAGCAGACAA-GCCAGGTCCAGGACCCTGCCCCCGTGAAGTCCTAGGTACACATCCC--TTGAACTCTCTG-----------TTCTCTGCATGCGAGATGAGAAAACG--CAGACCCAGCTTCCAGGTGTGGGACTGAGGCCATAAATGGACACCTAC-----------CCAGTGGCCTTGTTGCTTCTTGCCTTCTGTAGCCTGGGGCTGAGCAGGGGAACTAGGTGGCTGCTTTAG-AGAAACAGGCAACCTTCCTGACTCAGGACTGCCTGTGGCCTGCCCTGAACAGCCCGGAGGCTGGCTGCTTCCAGGCAAGGGCCCCTTCACAGGCTGCGGCTGCCTCCTGCCAGGAGCTGGGAACAGAGGGGCTGTTGTTCTGGCGTTTCTGGAAACCAGCTTCCTGTTTTTCCTGCTGT-GCCGTGTTGTTTTAATCTGTAGCAGAA-GGAAAGAAACAGCACTGGGTGGGTAGCCTGTGTCCCACAG----CCCTGCAGTGAGAGAGTCTGGTCCTTTCCTCCAGGGACTCTGTGGCTCACAGTCCTAGAGCTCTGTGACCTTGAACAGGGTCCTGATGCCAGGTTACCA---TGGGGAG-GGAACACAGGGACAGCACCTTAGCACAGCCTGTAGCCTAGGATTCACAGTGTCTGTGTGAGCT---GCTGGGGCATTTAAAATATCAGGCTGATGAAACAGTAAGCTTTTAG-------AGAGCCAGGGAGTCACACGTGCCTGCTCACgtcacagccctggacgagc----------tgggc--------------tcctgggttca---ctcacc-------------agccacagaagggactctaggcaaatgacttaacctccccacctttcaggtttttgcacctacaggatgggaaagtaacagtaattacatcactaggtcattgtga--------------catgtaaatCGGGTCTTGAGAGCTTTGGGT-------------CCCACACTAGCCAG---GCAGCCTACAAAGTTTTCTTGCTAAACAC----TGAACCCCATGGT--TCAGAGGTCAA-------ACTTTTAGTCAGAGACCTGGCAATCCATTTTAAAGATAGTCTAAGGAAGTTTCTCAGCTCACTAGAAGTCGATAGTATGTCTTAAAAATGC-CACAAAGAGTGTATCAAATGGGTCTCTAAATGTTAGTAGTAAAATACAAATATTTTCTTCCTATCTGCTTGGATTTAT-----------------AGAATTCGGGG----------GTGTGGGGAGTTGGGTTGGTGCCAGCATTGGTGTTCCTTGGTTTCAGGAAAG-ACAC--AGGCTGCCTTGCT---CCTTCTGCAGAGGAGGGTTTGAGGTACTAGCTCACCATTTCTGAACGTGATCTCTGGTGTCGGGTGG s bosTau2.chr22 39257906 1466 - 48330986 GTTAAAAATTTTT-------AAAGAAACTGATACTGATTCGCTGGTGGTC----TTATTTTGTTGACTAAATAAAACTCAGGATACCCTGTTGGATAAATTTGAGAAAGAATTTTTACAATATGGAAGGATGAAAAGTACATCCAGTTGAggccttggaaggtagacaaagccgggttccagtccctgcct--atgatgtcccagctgaggaaaccagtcaagctctgtgagccttactgccttccttcat-tgatgccaggaagtggccagacccaccttgcaggTGTGGACCGGGGATCACGAACAAACACTGGCACAGAGGAAGCCCAGTAAACGTGGAACCCTTTCCTCCCCTTGCCCTGCAA---------------AGGCAGGTGCTTTAGGAGGGCCGTGCCGCAGGTCTCACCCAGCACTGTCC--------------------------CTGGCCACT---------------------------------CTTCTTGCCCGTTGCTGGGAACAGTGGACCTGTTGTTCTGGCGTATCTGCTCACCAGCTTCCTGTTTTTCCTGGTGTGGTTGTGTTCTTCTAGTCAGCAGCAGGACAGAGAGAACTAGGCTGGGGTGGGTAACCCCAGTTCTCGAATTCCTCTCACAGCGAGAAAGTCTGGTCCTTTCCACCAGGGATTCTGTGA-TGGTGATCGTGGGGCTGTGTGAACTTGAGCAGGGCTGTGATGCTGTGCCCCCAGTGTGGGGAGCTGAAAAAAAGGATGATAAGTCACCCTTGCTGGGAATTCAGGACCCA-----------TGAACTAACGCTAATGGATTTTAAACGT-AAGCTGATTAAACTTTAAACTTTTATTTCCCACAAAGTGAACATCTCACCCATTCCCATTCTCTTCACATTCTGGGAAGagcggttaagacgtgggcactggggccagactgcctggattcagatcccatctctgccacgtgttagctctgtatgtggtgtttggcccatgacttcacctctctgtactgcagctt------cctcatgcgaggagaacttgtagtaactgcatcgtagcgttgttgtaaggctcgaataaggtaacgtgagtgaagtattaacagAATTCGGTAGCCCGTGGCAACCTTACAGTAGTTAGCATAAGGTCCTAAGATTTTACTTGCTTAACTCCATTTGAATCTC-TGATTCTCACAGGCTAGGCTGGATGCTTTTAGTCAAAGATCTGGAAGTTCAATTGAAAGGTAATTTTGTGAAATTTCTCAGCCCATTAGGAGTAGATAGTATTTATGAAGAATATGCATCAACAGTATAGCAGAC--ATTCAAAAAAATTAGTTGTA------AAATATTATATTCTTATTGGCTTTGAtttttttttttttttttttttGTTAATTCAGGACTATCTTCCTATGGAAGAAGTTTGCTTGCTGCTGAAATAGATGTCTCTTTGTCCCAGGAAAACACACTAAGACTGAATTCCGGGACCAGGGGCTGATGGGA----GAGGTCTGAGCTCACTATGGGTGAATGTGGGCCTTGATGTCTGGGGG a score=7548 s mm7.chr9_random 3757443 432 + 9745104 ACTTGGAATATACTTACATCGTCT--------CCTAGACATAGTTACTTCTGATTGAATGCCAGATCTCGCAGATGATAATCTATAGAAATAAACAGAACCCTTGGTTGAAAGCAAGGATTGAAAACCCTTGCTTTTCTTCGGGGAA------TCTTTATTCTTGCACGACGCTGTG-----TATGGGCAGACTTAACACTTCAGTCTGGATTCAGGGGTTCAAAGGCTTAAATGACCAAGAGAATCAGCCTGC--------------TTAGGGCGTGGTCATTTGGGAAGGAGGCTCTGACTGAACC-TGTCTAGTTCCACAAAATGTCCCAAGTG---CTG-----------CTCTTAG---GCTCTTCCAGAAGTGGCCGGCGTTCCCAGGGAAACAGCATCACCCAGCACA-----CACCTCTTTGGATTCCTCTT-------GAGTCATGGTTCCATTATTCTTTATTAACTGCTAATTTACCGTAACTT s bosTau2.chr22 39263536 463 - 48330986 ACTTGGAATCCATTCATATTGCCTTATATTTTCATATACCTGGTTAGTTTTGATTGAGTGCCAGACATCAAAGACAGAAACTTACAGAAATAACTGGA-----------------------GGATGCCCTCG---TCCTGTGGGGAGAGTTTCTCTTTCCTCTGGCA-GGCCCTGGGGCAGCTGTGGTCTGTTGTAAC--TGTGACCCAGTTCTAGGGACTGAGAGGGCTCTGTCCCCACGAGGACCCATCTGCATTCATCTTTCCTCTTAGGGTGGAACACTTTGGGGATGAGACTCCAATTTTACTGTCTCTGGTTCCACAAAGTGTCCAGAGAGACACTGAGCGTTTCAGCCTCTTAACTAACGCTTCCAAAAGGGGCAAGCATTCTTAGAGGAAACTCATCCCACAGTGCTGGGATCACCTCTCAGAATTTCTCTCTTCTCTGAAATCTTGGCTCCCTT---CTTCACTGCTTGCTAATCCTCTGTAACTT a score=5697 s mm7.chr9_random 3758068 208 + 9745104 CAAGGAAAGTTTTTAAAACCCTTTCCCAGCTTTTCTCAGTTTCAGTGGGTGGATTGGTCTGCGTTACCTGAGCTGATGCTTCCTCCTTGAGTTTCAA--GTGACCCATTTAATC-----ATGGTATttgtgagttgaattatgacctg-caaaaaatgtacta-agtcctagcccccagcctgtc-taaggtgactgcatttaaaaatagggtcgccg s bosTau2.chr22 39263999 218 - 48330986 CAGGCAGAATGTTTAAAATGTTTTTCCAGCTTTTCTTGTTCTCAGCAGGCACATTAGTCCAAATTACCTAGTCTAACATTATTTCAGTGGCTGTTAAATGTGGTGCTTTTATTCGCATGATGTTtgttgtggattaaattgtgtcccgccaaaaaatatgttgcagtcctaaccccaagtttctcagaatgtgaccttatttggaaatgtagttgttg a score=17441 s mm7.chr9_random 3759213 852 + 9745104 TAACTTTTAAGGTAGAGCTTAGCAAGATATGAATAATATCATTAATTCAGAGTGAATTCCCCCCAACCCCCGCCGGGTTTGTA--------AAAGTAAGAAAGCACTTGTATATACTGTTTAATAATTATGGCACATCACTTTCCCTAAAGTGTTAGACGTTTTCATCATAATTATTTAGAGGATTAACTACTGATCCGTTGTCCTAGATTACATCCCAACAGAGATGAATACATTTAGATCGTAGAAAGTTGATGTCATCTAACTTGAAACGGAGCCCCATCCTGGAGCCTCGGCCACGGACTACCAA--ACAGCTTTACTTTC-----TCTCCGTTGAATACAGCGT---ACCTAGTCAACAGGTGTTTGTTTAGAACTTTCAGAGGGGTCTAAAAGCAGTTCCCACCAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgCGGTCAGAGGC-AACTG-TAAGCAACAAAGCCTCCTTTCTTTAATGCATTCAACCCTAAT----TGAAGGCCCAGGCCTTGGGGTTGCCATGCTGAATAATACATGGTGGGGGAAGG---------------------GCTTGGCAGCAGACATT-CAGAGGAGTGCTAGGTGAGCCCAGAGCTCT----------TAGGAACTGAGAGCAGTGTGTATGGGCTGAGGATTTCAAGAAAGAACTCC--CAGGTTTTGCAGCACTGAC----TGAAGAGCTAAGAAGGTGTGTCGGGTGGGAAGGCTTGGGGATGCTGATCCAGGGAAGCTGGAGAGGGGTGCAGGATCAGGGAAGCCAGAAACACACAGGATGCTCCAGGGGA------------------TTGCTCACCTTGGCATGCTTGCTTGCTGGTGGACTAAGGGAACTCACGTCAGCA-CCTGGGGTT s bosTau2.chr22 39266036 866 - 48330986 TAGCTTTTCTGATAGGACTTGGCAGAATGTCAATTGTCTTACAGGTGTAAAATGAATTT------ACCACTGT--GCTTTATATCAAGTGAAACAGAAGAAAGTATTTGTATAGCCTATTTAATATTTATGACACATCTTTTGCCCTAAAGTGTTAGACACTCTTATCGTAATTATTTAGAAAATTATATGCTGATAAATTGTCCTAAATTGTATCCCAATATAGCTGAATAAATTTAGACCTTATTAGGTAGATGTCATCCAGTTGAAAATGTGGCCTGACAGCAAATGCCAGACCACAGTGTACTAGATACAGTTTTACTGTTAAATGTTTCTGTTTGGTACACCCTGTAACTCAGCCATCAGAGTTTTATGTAGAACTTTGAAAGGCACTTACAGGAAGCATCAGGCA----------------------------------------------GTTCCTGTCCTCAGCCAGAGACAAACTGTTAAGTGATGAAACCTTCATTCTTCCATTCGTTCATCCTTATTAGTACGAGCGTCGAGGCACTGGGGATATGGTGTTGAATACGACGTGAACAAACCAGGTATAACATTGAGTGCTGTTGTGCTTGACAGTGGAAATTCCAGAAAAGAGCTGGATAAGCCAAGAGCCCCACAGGCATAGTTGGAATTAGAACAGAGGAGTGTGAGTTGGAGTTTTTAGGGAAGAATTTCATAAAGTTTTTCGGAACTGGCCTTTTTAGTATGAAAGAGGAGGAGCTAG--AGGAAGGCCTGGGAG---TCATCCCAGGTGAGGGGAGATGGGAGCAGAGGTGGGGCAG---GGAAGACACCAGAAGCTCCAGGAGAGGCCCGTGCTCCACAAACTCACTCACAT--GCACACTTACT---TTGTGGAATAAGAGAACAACCCTCAGGGCCCTGGGGTT a score=17439 s mm7.chr9_random 3761364 893 + 9745104 CCCACCACGTAGAAACAAGTGCTTTGCTCT---CTGGGAAAACAGCATTGGAATTTTGCCTTGAGTTGATAGC-------ACATGACAGGATAGAGTCTCTGAATACATTCTCACCTCCATCTTTATTTTAAAA-GTGACGTGTGAAGTGGAAACTAGACTAGGAAATCAGTGTGGCAAGTGCCGGGTGCCACTTCCAGGAGGGATTATTTAAGGACAGTGTGTG-TTCTCTGATCCAGACCCAGGCTCTGAAGAAGCAGAGGG---TCTGGGAGGCTGTTGTTGAGAGAGCTGAAGAGTAGGTCA-TGGCGGGGTGCGGGGGGTGGGGGGGACCTGCAGCTGAGGAAGACTTGGCAGGGGTGGGA-GGGAAAGAGGCCTAGGGTTCCCTGTCTCCGGAGAGTGGGGT----------GTATTCCTGGGGATCTCTTAAGGG----TGGTGCTTTG--CAGGCCCCTGTGGAAGACCAAGACAGAGAGAGGG-------------CTGATTTGTGTG--AGCCAAATG------CCACAGCGTGGTAGGGGAGG--AGCTGACTTGAGCAGTCA--GGGCCCAAAGGGAGATAATTTGAGG----GTGGGGTTATGGAGGTACAGA-----CTCCTCTCTGTCTTGAGGGGAGC-TTTCTTTCCTCTGACTACTGAAaagaaagaaagggagggagggaggaagggaggaaggaaggaagcaagcaagcaagcaagcaagcaaAAGAGatcacatactcaatgcttaaggcaacagatttattcccctacagtt--taagagtcaagattcaaatcatctcacta-ggttaaggacatggtgttat--ggactgattgcctctgcagcctccaaggga-----ggctccatcctttcctctggcttctggCCTTCTCCCATCATGCCCCACTCTTACTGCCTTCTTTGCCT--TCATTTCCTCTTAAGAACCT s bosTau2.chr22 39267660 865 - 48330986 CCCTCAGTATAGAATTTAAAGCTTTTCCCTTTTCTGGGAAAACAGCATTGGAATTTTGCCTCATGTTGATAATTAACACAGCATGACAGGGCAGATTCTCTGAATATATTTTCACCTCCATCTTTATTTTAAAAAGTGAAGTGTGAGGTAGAGACTGGAATAGGAAATAGATGGGACAGATGTTGAGGACCTCTTCCAGGAGGGGTTATTTAATGACAATAGGTATTTTTCTAATTCAAAACCAGGTCCTGGAGAAGTTGAGGAATTGCTGGGTGGCTGCAGTTTCAGGAGCTGGAGAGTTAGTTAGTAAC---------TAGGAAGGAGGAGCCTGCAGCTAGGGAGGGGTCAGCAAGGACGGAATAGGAGGGGGGCCAAAGG------ACCTCACGATGATGGGGTCTCCATCACCATCTGCCCCAGGTCCCCTCCTGGGTTCCTGGAGCTGTGTTTGGGCCCCAGAGG-AGAGCGAGAAGGAAGCTGGGTTTGCAGTGTCTTCTGCTCGGTGAGGAAGCCAAGGGAGATGCCCACAGTATGGTTGGAGAGGGAGGCTGG-TGGAGTGATCAAGGGGCC---AGGGAGCTAAGTTAAGAAGATGGAGAGTCATGGAAGCCCTGAGGGTGCCACCGTCTCTGTTGGGGGCtgtattggtttcctggggctgctgtaa------------------------------------------caaata----------------------accacaaaattgtggcttgaacacacacatgtgttctcctacagtttctggaggtcagaaatca----gtttcaccaggggtaaagtcaaggtcttggcagggtgggttccttctggaggctctgggggagaattggcttccttaccttttctggcttctag------------aggcgc--------ctgcgttctttgtcttgtgactccttcctcataacct a score=23349 s mm7.chr9_random 3762503 1458 + 9745104 GACCCATGGGGATGAGGACCTCAGCTTGAGGGAGAAGCTGGCTGTATCTAACAGTCC-TGGAAGCTCCTGTCTGGGTTTGCTCCCAAATACTGTGACTCCCAGTGAAGTCCTG--------------TGTAATGTAGGATGTG-----AGGTGGGGCCTACTGATCTGGCAAACAGTTCCCTGGAGCTGCAGAAGCTGGAGCACCAACGGCTGA---GATTTCCTAAGAGAAGGCAGAT----AGATGGTCGAGAGCTCTGGCCGCTCCGTCCCGTGGGAATGTTC------CTCTGACTTGGGTGGGAAGAT---GATATGATTCCATCAA-GGAACTGGCAGACCTCTTCATAGCCCGTGCCAGATGAGCCTTT-----AGAAATGGCCATTCTTTGTC-----------------GCTGAATTAGGAGCTAG-TCAGTCTTTGTG-CCCAACCTGAGCACCTGTCGCTCTTTATCACACGATGCTGATGGAGAACAGCATTCCAGGTTCCCATCAAG-------------AGTCGTGTGTACACCGCCCACTCA-CAGC-ATAGCCCTGCCCCGCTCTGGCTTGATG-----------------------------------------------TGGA------CCCGTGATCAG--CCTGCAGAGCGGGCAGCCATACTG---------------------------GTGGCGTTCCCATCACGGGTGCTGAAGGCTGAGTCCACCAAGAATTCTTCCAACCCTTCTGTCGCCTTATTTTGCACAACGTTGCAACAGCTCAGAGCCATGCAGAGCCACCCAGAGGAGCTGTAAACAGGAAGGGGGACCAACCACAGCTGGATTTCAGAAGAGGC-ACTCTGTGAGAGCTGAGGAGGGAAGGCTTGTCATCA--GACCTCTGCCAAAGTCTCAGGGAT----------GCAGGAACCA--------------------------CGGTGTGGGCTGGG------AGCCCGCTGAACACTAGAAACAGCCGGGTTCTGGTAGCTGACTAA-----GGGGGTGCAGGCAGAAATGAAAGACCTGGTTGTTCCCTCTTGTAAGGTCTTGGGAGGGACATGGAAGTTGTC------AGGTAGCAGAGCCCTGAGATCTTTCT---GAGACCCCTGAAAATGGCCCGAAGACTCCCTGAGAG-CTGCCATCTCCGAT--TAGTTCAAGTGTGTTCTCAAAGTACCTGGTCGCCTTGGCAGAGTGGAGCTCTGTGTAGGAGGAACCACGTGCTGTTCCTTATTCCATGTTCAATCCCCAATGTGTGGAATCTATTTTGAAATATGAGCTCTATGCGATTTCATCTAGAGAGGTTCTTCAGGGTGATTTGTTAATTTTTTCCCCCCATCTATGAAAGTACTGTGTCTTAGAAAATTCAT-GTTAAGGAACAAATACTTTCATGAAAGTTCTTTAAATTATCTCTCCTAAAGTCATACTC---AGGAAATCCAAAATGGATAATTAAAAAACTGTAATCCATGGGAGGTGA----------CATTCTGACA----------TAAACTGTTAGCAAGGTGCTGTGAACCA---CGACGAGTGTGCCTTGCTGTCTGCTGTTCCTCTGCTTTCTCTCAGAAAATAAAACACCACCGTTGTAAGCCAGTGTGCCATCCA-ACAGCATGGACTCA s bosTau2.chr22 39270486 1602 - 48330986 GGCCTGTGGGGAGGAG--------CCTGAGGG------CGGCCATCTCTAGCAGCCCCTGGAAGTTACTG---AGTTTGGCTCTTGAACGTTGT-CCTCAGACTGAGGGCTTGCGGCGCTGGCAGCATGAAGGCCTGGGTCTGTCCCCAGGCTGGGCCATGTGGTGCGGAAAGCAGTATCTTGAGGCTCCTGAAGCAGGGGCAGCGGTGGCCAGCCGGATCCCCAAAGTGAAAGTGGATCTCAGGATGAGCATTAGCTC---------------ATGGGGAGGTTCTCCCTCCTCCGCCCAGCCTGGGAGGATTGGGGTATTATTTTATTAAAGGAGCTAACAGGCTTCCTTACATTCAGTGTCAGATAAATCTCTCCTAAATACATCGCTCCTGTTTTTCCTTGCAAATGTGGCCATGTTGAGTTATGGGTTAAATCAGTCCTTCTGGACTAGCGTGGGCAGCT-TATCTCCTTATTACCTAGTATTTATGGGAAATGGTCTGCCAGGTTCCAGACAAGTAATTGGCAAGTGAGTCTTGTGAACAGGACCAGCTCAGTAGCTGGGGCCTTGCCACCTCCTGGCCTGAAGCACTGAAGCCTGTGTGTGTGTTTCTGCATCAGGGCCATCTTCAAGGCTGGAGCCCAGCCCAGGCTCAGAGCCCACTGGCCTGGCAGCACTGTTGTAGTGTGTGGGTGTTTGACAAGCCAGGGCAGTGTGACCCCCATGGACAGTGAAGTGTGAGTTCACCAGGCATCCTTGCTTCCCTG-TGTCACCTTGTCTCATCTCACATTGCAGCAACCCAGCGC------GAGCCACTCAG----GCTGCC-----GAGGGGCTGCC--------CTGGA-----GAAAAGATGACTCTG-AAGAGTGGGTGGGGAGAGACCTGTCATCATCAGACTTTGCAGAGAtcccagggagagggctgatggcatggtccagggtgacgtcccagggagaggggtgatggtgtgggccagggtgaTGACTCCACTGATGG--GGAGAGAGCCCTTGCCTGGTGGCTGACTGACTGTGGGGGATGCAGGAGGAAAGCTGAG--CTTGGCGTCCACCTCTCTGGTGTTCTTGAAGTGACATGGAAGTGGGCCCTTGGAGGAAG--GAGCCCTGAGCTCTTTTGTGGGGGAACCTTAAAGATGAGGTGAAGATTCCAGGGGAGGCTGCCAGCCTAACTGATAGTTCAAGTGGATTCTTAAAATATCC---CATCTTGGCAGAGTGGAACTCTGTGTAGGAAGAATCACATGGTACTTCTTATTCCGTGTGCAGTCCCAAAAATGTGGTGTTTATTTAGAAATATGTGGTTTATGCTTTTTTATCTAGAAAGGTTACTTGGGATCATTTGTTACTATTTT---TCCATTTGT-AAAGTTTCATACCCTAGAAAATTCCTGGTTAAGGAACAAATA--------------ACCAAAAACACTTCTTACAGAGTCATGCTTTTATGGGAATTCAGATTGTACAGTT-GAAAACTCTAGGCTGTCAGCAGTGATTAAAATGTGCATATTTCCATCTGAATTATTAAACTGGTAGCTAGTTGATACTAACAAGTCTTCTAAGTATTCCTTGAT--------TTTCTCAGTTTTTT----AAAAATGAAGCAACACACTTGCAAACCAATTCAAAACCCAGACAATATTAAATCA a score=2247 s mm7.chr9_random 3764602 42 + 9745104 AAGGGGAAAGTTTTCCATGTCTCAAAACCAGGAAAAAGACCA s bosTau2.chr22 39272236 42 - 48330986 AAAGGGAAGAGTTTCTGTGTTTAAAAACCAGGGACAAGAACA a score=27571 s mm7.chr9_random 3765032 1245 + 9745104 TTGTTTGTTGTAAAATC-TTGATGTAAGA---------GTTGGATAGAATTCAGAGTAAGGCTGTTTCGTTATT-TAGCCTGAGGAGAGGAAAGTA---CTGCATGTCCTGTTTGCGTGGTAAAAATAAATTTCTCTTAGGCCTACGATGTGTGCTCCTTTGTCCGTTTTGGTCGCTGCCCCGTGTTTAGAA---TTGTTTGCCCATGTTAAAGAGGAGACCGA--GGACTGTGAGACCCAGCAGTGGTCGACCTTTAAGGGCCTG----------------GATGTGGTGCCAGCGGCTTTTACTTCCACTTTG----------GATTATCGTTGCCAGCTTTGGTGAGGAGGAAGTCTAAGAGGGCACCCTAAGAAATGACCCCTGTGGGCAGCATGTAAAATGTCCCCAG-CTTGTGTTGGTCTTCCTCTCCACACGACTCGAAAATAATGACAAAAGTAAATATTTGGGACCAGGTTTATTTTGGTCAGACAAATTCCAGCCTGGTTTCTAAAATTAGGGAATCTGTGGGAAGCACGTGGCTTGGGGCATCCTGCCTGAGAAGTTTGTCTCCGGGCTATTGGCTTCTCTTCCTTATTGTTGCTGACTTGAAAACACAGGTATCTATCTGAACTTTTCCTTGCATCTGCCCATCTGTGTAGACCCAAGTGTCTGGTGATAGAATGGCTCTACCCAGATAATTATAGTAGGCTTCCACCGCCTCTCCTCACACGCTGA------TGCCGGCGGCGTTGAGCTGCTTGCTGCCTGTCCTTCCCTCAGTCACTG--GGATGGGCCTTCTGAGAGCAGAGCTTTTATCTGGTC--------TCTGGGAAGCAGTCACGGA----------CCACTGTCCCCTGG-------------------------------TGGTGTACACTGGGCAACCAGACACA----------------------------------------------TTGTAACTCTCCATTTCTCTGGTGTAAAA--CCTCCCCTCTGCTTTATCCTCCCCTCTGCGTTCTTCCAGACCCTGCTAC-TCTCCACTTCCATGGGCAGGCCACTGAGCCCAGGGGAAGCCCAGGCTGACCAC------------CCTGGGTCATCTCATCGCTATCTCTTTGTCCCAGTACCCTGCACAAAGGAAGT-CCCAGAAGTTGTTTCTGTTT--CCTT---------------CTCCCAG-GGTTATCCTTGACCTGGAAAAGGATG-----------GCAGGTCCTTAGCTTATCTTTCACCACCACCTACAGCCTTCAGCCCTTTTGTAGAATGTAGCAGAAGCGGCTGCTAGCCTCTGTCCCCCAC-GAGGCTGTTTGGGAGTGGAAGGTGAGGCCTCCACTCACGGTGCCTCACCCTTACCTCCCTTCTCTTGCTTGGACTG s bosTau2.chr22 39272309 1368 - 48330986 TTCTTTGCCTTAAAATCCTTGAGGTAAGAATTTTCCAAGTTCATTTGGATTCAAATGAAAGCTGTTTCCATGCTGTGGCCTAAAGAGAGAGAAGGAGCTCTGTGTGTCCTGTTTATATGATGGAAATAAATATTGCT------------AGTTGCTCTCTTGCCCCTTTTGGTTGCTGTCCCAGGATTGGAAAGCTTGTTTATCCATGTGAAAAAGGAATTCAAAAGGGTTATGAAGTCCAG----AGTTGACATTTGAGAGGCTGAAAAACAGAGAGGAAGGACCCAATGCCAGCAACTTTTCCTTGTCCTTGGAGACCCCCAGGACTATGACTGCCAGCTTT-------------TCCAACAAGGC------------TATCCTGGTGGGCAACGTGTCAAATGTCCCAAGGCTCTCACTGATCCTCCTGCCTCCACAATTGCAAAATAACGACAAAAGTAAATATTTGGGGCCAGGTTTATTTTGGTCAGACAAGTTCCAGTCTGGTTTCTAAAATTAGGACTTCTGCGGGATGCACGTGGTTT-GGGCATCCGGCCAGAAAACTCAGTCTCAGGGATGTGCTGTGCTCTTATTTGTTGTTGCTTGCTTGGAAA------TGAGCATCCGAACCCTCTCTCGTGTCTGTCCATCTGTGCAGACCCAC-TGTCC-ATGCTAGGAACGCTCTGTCCCGCTCATGTGGATAGGCGCCCACCCCCCTGCCCTG---GCTGGCAGGATTCCCACTTACGTGAGGCTCATACCCCGCTGTCTGTCCCTCACAGACTGCCAGCCAAGCCTTCTAAGAGCCCAGCTCTCATTCTGTCCTTCTCCTTCTTCAGAACATTCTCTTAATCCCCGCCTCCACTGCCTTCAGGGTAAAGCCCTCCCGGctctggtcccacctcatggtacctcctcagccaccagccacactggcctcctcactgcccctcaagcacactggctgcttgcttgcctttgtaactttccatttcccccatataaacatccctacccctgcctt--------ctgtccgtccttctggactcaactgcagacccacctccccaggtagactgcccGGCCCAGAGGAAGCCTTGGCCAATCACCGAGCATATTTGCCAGCATCATCT-GGCATGGTTTCTTTGCCTCAA-----AGAGCAAAGGAGGCACTCAGGAAACATCTCTGTTCAGCCTTGGCTCATAGTGTCGCCTCCTGGAAGCTTTCCTTACCCTGGAGGAGGCTGCCCTCCCTACAGTGGCTCCTGGGATTGTCTTTCTCCTCCTCTCAGACTCGTGGAGCTCTCTCTAGAATGTAGCAAAGGCTGCTGTCCCCATACACCTCTGGCTGGGGCTGGGGTGGAGTGGC---TGGGGCCTGCATTCCCTGGGCCC--TCTTTGCCTTCATTTGCCCTCTTGGGTCG a score=4916 s mm7.chr9_random 3770145 856 + 9745104 agggagggagggagggagg-gaAAGCTATTAGAGTTGACTCTCTGAAAACTTAAAAATTCTGCCTATCCATCTCTATACACCCTCAGATTTTAGAAGGTCTAAATCAGGTGCTGTTTCCAGCACACAGCACAGTCAGCATGACAGAGGAACCTGTGATACTAACATCGTATCATCCCTAACCTAACTAAGGAAAATGCATATAAAAACCAGACTCCCTCAAAGTGTAGGTTCCCCCTCCCAACTCCCATGATTCTCAAAAGAA---ATAGAAACACCCAAAAAAACACACAGGCATCTATACAGCTTGGAGGACACCCAAAAGGGTGCAAATTGAACT--CAGCAAGCTACACTTGGCACCTCTCAGACTGGCAGAAGCTGTGT------GCTCTGCACGCACGACAGCGTTGGGGCTCCTGTTGGCCCAGCAGAGTGGACACCAGCGTGCACATTGCTCACTGTCCCATTGGCAGCTTACCCACAAGCACCAAGGACAACCCTCTACACTgttttctcctttcaagatgggttctgagcatcaaacccaggtcttcaggctcatgggcaaaagctcttacccactgagccatctctcc---------agcccATATGTACACAGAAAGTACACAGAGATAATGTACACATTACGCCCACATAAAGGCTGTGTGCCGAATAGTGTTCACAATACTATATCGGCATTCTTAAC--ACTTTCATG---AACATGCAATGCGCAATTGTTACTTTAATACATGATACAAAACCCTAC-AATACCATGAACAATGAACCTTCCCCCTG-------------CCCCCCCCCCAGTCCCTGTCAGCTCTTTA------TCAAACCTTCCAGGGGTACTCTCGGCAC--AT-AGAACATGAACAtgtgtgtg s bosTau2.chr22 39287246 784 - 48330986 AGGCTGGGAAGGAATCAGTTGAAAAATATTAAGATTTGATTTC------CTTAAAACTTCTGCACATACATAACTGC-TATTTTAAAAAAGTAGGAGACTGAAAGCAGAGACAGTTTCCAGCGTACAGATTAGTCCA--------AGGA--TTGTGTTTCTGATAT-ATATCAAAGA-AACTTTTGTAAGTCAAA---ATATAAAAggcaaa-------acaatgta------------caacc-----agttttcaaaagaagaaatagaaatgaccagaaag-tatacggaagactgtagaactcagatggcagcccgagaaatgcaaattaaagcagcagcacgttgccgtcttcacctttcagcttggcagaggccctttcaagtctctgtgtttgcacagcctaagtggagcaccccgtgagggggtgg-gtgcacatca------acaccgc---ctctctaggcggcagattgtccacagttatcttagagg---cttgacattttttttttct--caa-----------------agactttggcctttg-----------aaaagcaattatacttctaggaatttcttctaaggggataagtcagacgtgcacataaa----------attatgtacgctatgctccc--------------tgc--agtattatttttgatggTTTA-----GTTTTTTACTTATTATAATGCATGATGCACAGTATGCCATTATTATTTTAATACGTGATGCAAAATCCAAAGGATACTAAAGTAATTTTTCCTCCTTTCTGGGGTGTTCTACATTCCTCTCCCATGGGGCAAGCAATTACTTACATTAGTAAATCCTTCTAGAGACACTCTTTCCATCGATAAGAATATGCACATGCTTGTG a score=20929 s mm7.chr9_random 3772325 1227 + 9745104 TTTTGTTCCGTTGATAAGCACAAAAGTGGGACTTATTTTTTTAACAC--CATTTATTTGATTACTGTTAAATTGTAACCTGTGTTTC-------------TCTTGTGTGCTTCAATCCTTTGCATTGTTAGTTATTATGGCTC-------------------CTGTGCTGTGATGGCTCAGACCTCAGATCCCAGCCTCACACAAACCCA---------CAAACCTGGCTTGTTTAACTAGTCCCTGGTCACGGAGAACCCAG-------AAAAGTGCTGAGACAAGGAAGAGC------------GGGGGCTCATAGGCAT--CGTCACTGAGAGGCTG-CGCCTCAGTACAGATAGTAAGGATTCAGTTCTGGCCACTGTGTGCCCTCCTGGCTCCAACT--------------GTGTCTCACGGGT--------GACTCTAAAGTGAACTGTG------------------------AGAGCTCAGATGCAGCTAGTGTCCCTGGAAATAAGACCCAGCATGCAGGGAGTGCGCTAGGCAAAGACGGGGA---------GAGTGCCAGGAATCCTG------------GTGTCTGGGAGTCTGGGA----------------------GGCTCTGG--------TTCCTCATGGGGAAATGGGTCTGTTATGAT----TGTGCCACACGCCTTGAAGAGCAGAGATGACTTTTATAAAGGACCTCAAATAAACGCACCCCACAAGTGTTA----------------AGTCAGGACAGAAAAAAACACAGC-TGTCACCTGAGAAGAAAGTGGTC--------------------------------------------------------CCCTCACTGCT-GAGGACCCGTTGCCAGC-----------------ATTGGTGTTCCCGTAGGT--GGCTCCTTCACA--CTGTCCCATGGAATTCCCTGGGGAATTTTATCTCCTGGAAATAAAATAGAGGCTGATCG-------------GTGATCTCCGACTCTTCTCTAGA---------------------------CCAAATCT---TTTGAACTC--CGTGGTCTGCAGCCCGGCCTCTCTCCAC---------TCCCATGTTACACCAACAGAGGGGAAGTTGCGTTTGTTGACTGCTGTTTCAGGGATGGGAAAGGAATGTAATGTATGTGTACACTGCCCAGAATTTCCTGTCAGACGCCCATTCCAGACCGCGG-CCTGGGAGGCGGTCCAGAGATAGGAGCCC-GTTCTAGGAGGGAAGAAATGGTGCATTCATTTCTGTGTGGGCCTCCCTCCGGAAAGGGCTCGCCTCACCCTCCGTTCTAGAGGGCGCTTGGCTTTCTCCAGTGTGATGTCGTTGTGAGTTCAGCAGTAGTACGGTCGTCTCTTTAGGGCAGTAGTTAATGTGCTCTGCTCTGGCGGTCCTGTGAGTGAAGCCACAGCCCTAACTTAAGGCACGGTTGATGTTTCATGCCGAAGCTGTAACTGTATGAGCATCCAC s bosTau2.chr22 39289711 1495 - 48330986 TTCTGCTCATTTATTAGATCCACAACTCGGCCTTGTTGTTTAAACATTTCGTTAATTTGATTACTGTTAAATGTCAACCTTTGCTTCCTCAAGATAAGTCTGTTGTCTGTTTAAATCCTTTGTTCTGCTACTGATTTTGGCTTTCAGTATGAAAAACAGACTCTgtacagtgatggttaagagttcatattctagacccacacagacccggtgtatctccagccctg-------caacaggagctgcgtcacgtgggcaCAGGGGTTTGCAGGAGCACTGAGGCCAGGAAAGGCATTCCCAGCCGAGGGGCCTTCCTGGGATGCTGTCAC--AGAGTTTGGTGGCCCAG---AGACATTCAGGGGTCAGGCACATCCTCTGTGT------CTGGCTGCATCTCATAGGGCTGCTGGGAGTGTTATAGGTTCATTTTGGGCTTTTCAGAGTACAGTGTTTGGAGTGAAGGCAGGTGGTCCAAGGCCTCATATTCAGAGTTTCTCCCTGGAAATAAAACCCAA-ATCCATCAAGTGC--TGGGGAGAGACAGGGAAATGGGTTGGGAGGCCAGGAGCCCTACAGCCGGCTGCTGTGGCTTTGAACCCCAGAACCCTCCCTGCATACTCGTATGGActctgagccttgattttctcattggaaaatggg---gTGATGGTATGGGGAACTGCACATGGTGAAGGCCACAGGTGAGCTGTGTCAGGG--CTCACACAAACAAGGCGCTCAGCTGATGCGGGCTCTTAGGAGCCAGCCGTGAACCGAGGAAGCACATCCTCCCACCTCTGGAGGATGAGATCAGGGCTTTTCCTGCCCAGTTCTTAGCCATCAGCCCTTGCCGGCCCCCCACCTTTATTTCTCACTGCTAGAGGAACCACTGCCAGTTCCAGGCTGCAGCAGGAAAAAGAGCTTCCAAAGGCACGTTTCTTTCAGAGAATGGCGGATGTAATTCCCTGGGCAAATCGATCCTTTGCAAATAGAGTCGGGACTGATGGAACATCTCAAAAAGTGACTTAAGTCCTTTTTCTAGGAGCGAGAGGTGTTTGAAATCTCAGCAGCCACATCTGCTTTTGAACCCTGCGCGGTCTGTGCCCTGGCCTCTCCCCACACCCACACCTCCCATTTTATTCCAACAGAGGA-AAGTTGTGTTTGTTGACGACTCGTTCAGGG-TGGGAAAGGAATGTAATGTATGCACAGACTGCCCAGAATTTCCTGTTAGACAGTCATTCCAAACCATGGCCCTGGGATGCATTCCAGAGATTGCAGCCCAATTCTGGAAGAGAAGAAATGGTGCATTCATT----TAAAAGCCGACCCTTGAGAGGAACTC-CCCCTCTTTCCTTAAAAAAGTGTGTTTAGCTTTTTCCGTGGTAATGTGGTTGTAAAT---GCAGTCGTATG---GCCTCTTCAGGGT---------TGTACTGTGCTCTGACATCCACAGGGGTAGAGAAATAGTCTTTCTTTGGGAAAC-TCTGGTGTCCAGTTTTGCAGCTCTGATAACATTGGTATCTGC a score=11806 s mm7.chr9_random 3774621 723 + 9745104 GCAGAGGTGCGGCAGCTAAGACATGTGAGTCAGATCGGAGGGGAGGAAGGAACAAAGCCATGTGGTAGCCACGCAGGGTGGCGACCACGCAAAGCCTGCGTGCGTGCAGACCCCAAA------GGTCCTGAAGCCAGGGT----GGGCGGTCCCGAAACTTCTC---------------AGCCTGATCCTGTCTACAGAAA-ATGGAAGGCCTGTGGTTATGTGGCATGTG------------------------GCCGGTCTGGGGACATTTCAACATTTCTGGAAACTGTAAGGACACCAG-AGGATCAGGAAACATAAAACACTGGCTGAAATTGCCCTCGCCCTGTGTAGACGCCACTCCACTGTAGCCTCC----CCCGCTGGC-ATAAACTCAGCCAAGACTCA---CACTAGTCTCACTGGGACGCTGGAGCACCGACCCCATGGCCAGCCTTGG-AGACGCTCCTCGTGG-ATTCCATG------ATTGTAACACTTCAT-----GACACACTTCATACATGATGTCCTAGGAAGGACCTGAGGTCAAGGTCCGAC---AGGAGCCTCATGCAAAGCAGATAGGTTTTGCTCGCTGCCTTTT--ATACCGATGTTTGTGTATCCCAAAATGTTCTCTGCGCTGGAGGTGAAGCTGGAAGGGGCCACTTAGTGTTCTAAGTTTGGAATCTACATCACCCAAACCAAAATGGGTCTGCCTACATGTTTTCTCCTAACGCCAGGCTGTCTCCGTGAGCACAGTCATCTGGTTACAGGCTAAATTC---TCACAGTGCA s bosTau2.chr22 39291746 749 - 48330986 GTGGCGGGGCGAC-GCTGGGAGTTATAGACCAGATCAGAGACAAGGATGG-------TTGTGCGATGCTCACAGAGGATGGTGTGCA---AAACCCTGATCCTGGGTAAACTCCAGATATTCTGGTTCTGCAGCCTGGGGTTTGGGATGGTTCCTAAGCCTCTCTACATCTGGAATTGAAACCAGGTCAGAACGTAAGAATTGTCAAAGGGCAGTGGTGGTGCGGCGTGGGCAACTACCACAGTAACTAGGAAACGCTGGCCTTGGGG------------TCTGGATGCAG-AAGGAAACCAGTCAGGTCAGGAAGTAGAAGAGGATGACCAGAAG----------------ACACGCCCTTCT----CGGCCTCTTATGCCCACTGGTTGTGGGTTCAGTGGTGCCTTCTGCCTCTCGTCCCAGTGACAGAC-------CAAACCCCACCATCAGTCTCGGTGGACTTTCCCCATGGCATTCCGTGCTTTTAACTACAACACTTTATTTCTGATCATATTTCAAGTAAGACTGCCTTGAAAAGGCCTGAATTCTAGGGCTTACTTTAAGTTTCACATGTGGACC---TGGTTCTTACTTGTTTACTTTCTAACATTATTATTATTATACAAAGAAGCCTTCACTAGATAGGAGGTAGAGTTCTAAAGAGCTTCTTCACGTTCTAAGTTTAGAATTCACATAACCAAAAACAAAATGGGTCTGCCTACGTGTTTTCTCCTAAAGCCAGGCTGTTTTTGTGAGTACTGTCGTCTGGGTACAAGCTAACTTCTGTTCATAGTGCA a score=5289 s mm7.chr9_random 3776517 1240 + 9745104 GCTCCAGCAGTGCCCTGAACTGACCCATCAAGGCACAGCACTTTCTGTAACTAGATTTTGTATTCACATTCAAATGTCTCTCATTAG-----------------CTGGGACACACCTCCGCCTGTAGAGACCTTGCTCAGCCTCCAGGCTCTGCACCCACTAGCCTGGGAGCTTCCATTCTCAGAA-CTGAGCCTTGCCATTGACAATTATGTAAACCT-AGTGCAGACTGGCTCCGGGTAAAAAG-GAATTTGGTTTT--ACATAATTAAAAACAACACAATGGTCTAGTCT--------------------TGATAATACTT------------------CATCTTGGGAGCTTTGTCT-CAGCTTTGGCT-------TCATGCA------------TTAGAGGCAAGGGTGGCGACCAG---CTCCAGGCTTCT-----------TAAGAAACCCAGCTAATAGAGGAGACCTATGACAGCGTCAGCAG-GCATCCCAGACAAGACCCTCCTCGGCCTGAGTTCCGTTGTATG-----------------------------------------GTGA-------------------------------GGTCGAAGCTCGCTGAGGAAAACAGCCGCTTGGTAGGGTTCTAGCAGGCGGAAATTGTCAGATGTATGCCATATTCCCCATCAGTAATTGGTATTTTAATGATGTCCCTTCCTGCT-----------ATTCTACCCAGAGAAACTAGGGAGACATTC--TACAGCTCCCATCCTGT----AGGATCAGGGACTCAGTTCCTCTGAGAAAAGGGGA---------GCTCCCATGGCAACGACTCTGAGGCTTATTGGTGGATGCTTCCAGAA------GGCTCCGGCCCTGTGGAAAGAGAGGACCACATCC-----------ACGGGCGGGAAGCA----------------GGCTGTGGTGATGTC-------------TAGAAGGACGCAGT-------AAGGCATATCCGGAAGAACG-----TCGTATCTTTGTTACCTC-TTGTCACACCTTCTC--------CAGGAGACACAGGAGGACCGTGTGTAAGACCATAGTCAGCCCCAGCCTTCCCACCAC----CGGCCATTC---------------------TGTTCTGCTCATGTCTCCTTAGGGAACTGAAGATATTTGAG--TCACAGAATTGTTTGCTACCTCTGCCAAAAGTCTCCCTTT--------------GTTCACCTTAGGAGGCCTGGCCATAGTG-GGGGAAAAGGGCAGATGCTGGGCTCTGCCTCGGGCATGACCTCATCATCACAGTGGAGGAAGAG---ATGGTGGTCCTTCATA---GCCTGTGCTGCCCTGAGCCTTGGGGAAATGGCAGTCATGCATCTC-----AGGGCACCTTGATGGGAAAATGTGCTAGATCTGCCGGGCTCCTTGAATGCTCCTCCCTGGTGCTTCTCCTTGAGTGCTCCTCCCTGGTGCTTCTCCTTGAGTGCTCCTCCCTGGTGCTCC s bosTau2.chr22 39293199 1437 - 48330986 gccccagccacgccctgggctaccccactgtaacaagggtcgttctgtatcagaattgcttattcccgt------gtctcctcctgggcgtgcgtatcgtgaggttaggacag-----tgcctgtgtga---ttcatcagt-----gtctctacattgccATGCCTAGGAGCCCACATCTTCAGGGGATAATCctttccattccaagtaacataaaccccaatccatactggcttaaaagaaaaagagaatctattctttcatatagcttaaaatgccagaaagttctggtgtattgaaaccaggtccacagatggtgttgtctgaggcctgtccctctccacagcccagttactttctccgcagtgttggctcatgtgatcaggtaggtgcttctcacttggtggccaagatggcccctagtggctccaggcttatatcctgccagttttgcaaaccaacaaagaaagaacatcttcaatagctgtagcattgagtccccaagctaatgttccttggcccagcttgggtcacatgcctgtccctaagcctgtcacatagctctgattggctgggcTGTGGCTATGCACTGAGAGTTGGTTGGGCGGACAGTGGTGGAACTTTAACCAGAAGGACAGGTGAT-----GGATCCTGATAAGCAAAAAT-GTTGCATTTCTACTACACTCCCCATCGGCAGCTGGTGCTTTGAAGATATTGGTTCTTGCTGCTGGGCCAGCACTCTGCCcagagggattgggaaggtatttgggatgattcctgtcttaccctgaggactgaagactca-----------aagaaggcagccatctctgctctcatgtcagCTGC-------CCCATCTGTAGGCACTCTCAAAGCCCCTCGTCTGCTGTGCTGGAGGGTGGAAGCTCCCCAGCCCTTGGCGGAGAAAGAGTGGGAAGCAGGGTCTTCATCTTCTCGGCTGCAGTGACATCAAGTCCAGCGGTGGAGAGGGAAGCGTTTGCTCTCAGAATGTGTCCCGGAAAACAGAGCCCCGTGCCTGTTTGTCCTCAAGGTCACACACTCCCCACATGGTCAGAGGGCACTG--GGAACATGGATGAGGCC-----CGTGCCCAACATCTCCAGCTCTTTACAGCCTTTCTCAGGATTTCTCAGAGAAGGATTTCCTACCTAGGGCTGCTCAGAGAAATGGAGACATCTTAGGATCACCCCAT------CTGGCCCTGCCAGGGATCTCCCAGTCCTACCCTATGGGAGTCCATGTTCAGGGGCCAAACACCTGTATGGAGAGAAGGACAGCTGCTGGGAGCAACCATGAGCACATCTTCCTTAGCAGAACTAAGAGAGGAAGCAGGGCGGTACTTCTGACGGACCTGCAC-GCCCAGGGCCTGAGGGAGATGGCAGAACAGAATGGCCCAGGAGGGGAGCCTGCAGGAGAGACTTGTTGGGTCTGTTGGCCTCCTCA----------CCTGG-----------GAG--------------------------------------GGTGCTCC a score=8482 s mm7.chr9_random 3777916 436 + 9745104 TTTTGATGAGCACCATAGGGACAGGAGTCCCTGGGCCAGCTGCAGGCTGGGCAGGAACAGTGCTCAGCA---AAGAGCTAAGCAAGGCCTTCAGTGGGAAATGAACTGCCAGGGAGTGGAGAGGGAGTGTGGACGCTGCCTCTTCTC-TCTTGAGACCCGTGTTCTCTC--------------AGAAAACAGCAGCCAGAAGAACACA-CTGAACACCAAGCCCCTCCTTTTA--CCTTCCCCACTCTGCATC-CGGTGTTTAAAGCAACCGAATAGAATTATTTCCCAAGATTTGTCTAGTTTTGC--TTTTAAAGTACAGTTTATATAACTGAGACCTGTTATGGTAAG-TGCGTCTCTCAGTCGACAGATGCCAGCAGAAAGAAAAACATTTACTTTCGTAATATCCAGCCT-TGATCCAGAACGTAACAGCAGAATCACTTTTTTTCTTCCAAGCAAA s bosTau2.chr22 39294636 408 - 48330986 TTTTGATGCACAGTGAGGGGCAAGGAGCTCCCGGGTGAGAAGCAGA-TGGGCAGGCGCAGAGCCCAGCAGAGGAGAGCTGAGCCA-------------------------------------------GTGGATGCTCCATCACCTCGTCTTGAAAGCACTGTTCTTTTCCTAAGGGAAAGCAGGTGAACAGCCCCCAGCAGCATTCATCTGGACACCTCACCCTTCCTTTTCTTCCTTCTTCTTTTCTCATCTCTGCCTCTC---CAGTTGACTAAACTCACTT-CTGAGATTTTTCTAGTTTTGCATTTCTAAATTACAGTGTAAGTGACCAAGATCTGTCATAGTAAGTTGGGCCTCTTAATTGTCAGGTGCCAG----GGAACAAACGTGTACCCACGGA--ATCCAGCCTGTGATCCAAGGTTTACCTGCAGAACCCTTACTCCTGTATGAAGCAAA a score=13171 s mm7.chr9_random 3779370 1020 + 9745104 AGTCATACACTGGTCCTAAGGAAA--CATTTCTGTTCCCTGTCTAGCCTGACTTGAGAGTGGCCCA--CTAGCACTGGAGTGCTTGGGAAATTGGAAGAGCCCAGAGCATCC-----------------------------CTTACTTAACTCAAAGG-----------------------------GAACCCAGCAAAGCAGCTTC-----TCCCTGCACCAA---GGAAGCCGGACCACGGCTGTCAGCTCC------------AGGGT---------------AGCTCACACCAATTCTACGGCTCT-----------CCAGACACG-GAGTGATCCAGCGGTAGAAATTACAAGTGACTTCTGGTTCCAAGTTTCAGGttgattgattgattgattgattgattATATGAGC-AGTTTGTTAATAGCGCTGAGGAAGAGTTCTGTCAGCCAAAGATGAATGAAAACAGCCCACTGG-------------GAACCGCTTCCTCTCAGGC-----TGCTCACAGCTC--------CAAGATGCAGGCAAATGGTGT---------CAGAGAAATACGCCGTCCCTCACCCGGAAACCAGCACAGCACACTGTCGGAATTGTTTTTGTTTGTTTGTTTCCTGCCCAGGGTTAAGTTATCTGAGTGTAACATAAACATTTAAACTCCCAAAGAAACAGTCAGGCCGTCATCTAATCAGTCACTTATATTAAATACAAGTTTATTATAATGCCTTCCTCTCTGCTTGGCAAGCTCTCTGCTTCTTAATCAGACCTCAGTTGTCTCAAGATTTGCTTTCAGCAGGGCAC-TGGGGAAATCACACA-TTTGGAAACAGG-CCACTAGGGCTCACG----------------------------------------------GAAGCTATGACCCCCATATCTTC-TGGGAGTCTGAGGAGCC--CATGAGAGGCAGTTTGTGACATCATGGTCTATAGAGGTCAGCCTTGACCCTCAGTGAACTTGACAGCAGCCATTATCTTTTCTCTCCA------CTCACAGCCAGATGTAAAGCCACCTACCGCTTGGCCCAG--TGGTCTAACCTAGCATTTTAGTCTTGAAATTAAAACACTAGGGTCCTGTGACATACACTCAAGGACTCATGGAGAAAATAGAAACAGCCAGCCTAAATCATTAGGATTTATGATTCTAAAGTTCATCTT s bosTau2.chr22 39296979 1140 - 48330986 AGGCTCATACTGGTCCTCAGGAAATCCATCCATTTCCCCTG-CTAGCCTG-CTTTTGAGAGGCCCAGCCCAGCCCAAGAGTGATTAGACGATT--CAGAACCCCCAGCTTCCAGGTGGTTCCTGCAGGCCCTGATGTTGACCGTATTTAGCAGGAAGATGCCCGGACCCTCCCACAGCCCTGGCCGTGAGACCAGTTGAGCTGCTTCACCTCTTCCTATACCGATCAGGGAGCAGAGTGA--GCTGCCATTTCCCCACTGGGGGCAATGGTTTGCCAAGTGACCCGAGCAAATAGTAACCCCACAGCCCTGTTTGTGGCTGCCAAACAGGCAAGTAATCATATGGTAGAAGTTATAAGTAGCTCATGATCTCCAGAGTCAGG--------------AATTTTTTTAATATATAGGTTAGTTTGTTAGTTA---TGGGGAAGATTTATGTGATCTG----TTGATGAAAACAGGACCCAGGAAAGGGTTTTGCAGAGCTATTTACTGCCCGGCCTGGGTGTTAACAGCTCATTGTCTGCAAGACATGAACAAACAGCTTGTTTACTTGTAGAGAAATGTACTGTC----AACCAGAGAAGAG-ACAG----------------------------TTTTTTCTCCCTCTGACTAAGTTATTTGAGTGAGCCATAAAAACTAAAACACCCATAGTAACAGCAGAACAGCT---TAAGCAATCATTTATATTAAATATGAGTTTATGGCCATGCTTTTCTCCCCATTTGGCATGTTCCCTCCATCTTAATCTGACCTGAGCTGTTTCAGGA-TTGTCTTcggcgtggtgcgtggggaaagcacgtgctctggaaacaggcccacttgtgtttgagtcctggcacaagcacttcctagctgcatTTTCTCTGCAATGAGGTAGAAGCAATCACC----TGTCTCCTTGGGTGGCTGGGAGGGTGGTTTGAGATGAGAATTGTGAAGTGCTCCACCCAGAGGGCCAGCCCTGGGGAATAGTGGTC---ACTGTCGCTGCCACCACTGCTGTGCAGGAGGTCTCTGTGCCTGGTG----------GTCCTCGTGGCCTGGTCTAGTCGGGCCAGGCGTATGGAGCCTGAAATGAGAAAATGGATGCCCTTTGACATATACCTAAGGGTTCAT-AAGAAAAAAAAAATAGCCAGCTT---TTCTGAAGATTCATGGTTCTCAAGTTCATCTT a score=27548 s mm7.chr9_random 3780956 1712 + 9745104 TGAGAATCTTAAGTTCATGCTTGCGGGACCACA-GACCAACCAC----------------------ATCTGAACACTTGCTTGGAAATCA----------CCGTCTGCGAGCCTCCTATCTGAGTGCATTTGGTTTT---GCGGGCAGCAGGGAACTATT---------GCTAAGGTCTTGTGATCACGTAGG--GGAAGGTGCTGGAC-----CTCCCAAGTTCATACAGCGCTTAGTACCAGATGGCCTGCG-AGGAGAGATGGCCTCTCGGTTGC-----TCCACATT-TAAACCATTTCCCACAGTGTCTGTTTTCCCACTAACCCTCAGCATGGTCCCT-TCCCTGTGGCTTCGGCTCAGAGCCCCGCGGACCCACCCAGCCCTGGTATGAGGCAGAACTGCCCCAGCCACATTCCCAGG-AAAAGGCTCTGGCTCTGGCTGGA-GTCAGTCTAGTGCCCTGAGGTGCGTTT-TCATCTGAGACACATTTTACCTTTTATTTCTGACTTGTGGCAGCTTGTCCTGAGCAC---GGATAAACAGAAAGACCCATCCCTCCCTCTGGTGCCTCCAGCCAGGACAGGCCAGGG-------------CACTGAATTGCCCTGG-----ATGGAGA--GACCGTTTCCTGAATCCCCAAAGCACGTGTTCTCCGTATCACGTCTCCTGATATCTCTATAATGGATGCCTCAGC----TTTGTCCTTGGG------AGGTCCAGATTCCC-----CTTTTTACGATCAACTAACTGACTTTAAGAAGGGGGTTCCTATGTGCTCCTAAATGGCTTTGTCTTGAACGCATAAAGCCTACAGTCC-----CCATAATGCATAGGAAGTGTCCAAGAACCAAGTTTCAAAGTGGCTCTTGCTTGCTGCCCCATGGGAGGATGCTTCTGGGAGAAGGTCAGGTCGAGTTTGTTC--ACGAGAAGGCTGGTTTGGAAGC---------------TTCAGGCACATGTTTTACTTGGT---AGCACTCAGGTGACAA-TGACCCTGAGGACTATGTGGTGAAGGAGCAAGC----CCCACTG----AAGTCCACAGGATTTGTA--CGGCCTGTGGGATTGGGCTCCAG---------GGCCCCCAGCATCGGGGTTAAAGAGACAGCTGCACAGTG--------CGGTAC----------------------------------TCATGGA---------------------TGCTATTTCTTTCCCCAGCTTCCCAGCGCAACATCAGCCTAAAGAAGCAAAGGGGTCGGAGCATCCTTAGCTCTTTCTTCTGCTGCTTCCGAGACTACAATGTGGAAGCCCCTCCGGCCAACAGCCCCAGTGTGCTTCCGCCACTGGTGGAGGAGAACGGTGGGCTTCAGAAGGTCAGTGCCCCCTATAATCTAAAGCTGCAGTAGTCTGTATGCCACA-CCTGGACACGT-TCCCTCACAAGAATGTGGGA-AATGCATATGCAGCCA-----TTTAAGACTTG------------GGTCCCATCTTTTTAGGTACTGAGTATTTCTGGTCTTCCCATCTAGCATCCAAAGGGCATGCATGAAGGAAGTTTAAgaccagagagagggctcagctggtaaaggggcttgccgacaagcctgataacctgagttcaagcctcagaatccacagggtagaaggaaagaattgattcccacaaggtatacctgacattttcat-gcacactgt------agcTTacacacacacacacacacacacacacacacacacacacacacatacacacacGATAAATGTAATTTTAAAAGGAACCGGTAGCAGGCATAGAATTGGCAAAATAAG-------ACAGAGAC--AGAGAAGACCACGCAATGAGTGTAATTGACCTTAACTTCCTTG---AGTGACAACAATATCTGTTTAACA s bosTau2.chr22 39298263 1771 - 48330986 TGAGGATCTTAAGTTCACACTTCCTAGGCCAAATGCCCAACCCCTGGCTAGAAACCATCCAGGCCTGTCTGTCGAGCTGCTGGCAAAACAGCCTTTCTGTCCTTTTTCAGAATTTCCACCTGAATGCATTTGGTTTTACTGCTGGTAGAAGGGAGCCTGTAGACTTCCAGCAAAGATTTTGTGATCTCTTGAGAGGGTGGGTACTATACAAATCCCTCGGTGTACAAAGAGGAATCA-TACCAGAATCCCTTTGTGGGAGAGCTGGACACCCAGTCACAATAGCACGCGTTCTGAATAGTTCCCTGTGGTGGTGATTTTCCCGCCAGCCCCCAGCATGGGCCCTGTGCCGGTAGCCCGTGTGCAGCGCT--GCTGACCCACCCAGACGTGGCATGTGGTGGGACTGC---------ATTCCCAGGCAAAACGCTCCTGCACCTCCAAGTTGTCAGCGTCCC-CCCGGAGGCGTGTTTCTCATCAGCACTAATTTTTGCCTTTTATTTCTGACTTGTGGCAGCTTGTCTTGTGAGCCCTAGATAACATAAAGGACCCATCCCTCCCTCTGGAGCCTCAGTCCATTGCAGGCCAGGGACTGAGTGGGTGACACAGTGTTGCCCTGTGTTTCATGAAGATGGGCTCTGTCCTGG----CCAACCTTCGCATTCT--GTCCCATCTCTCCTGCAGTTTCTGTTTTAAGTGTGACGGAAGTGTCCGCCCCTAGGCTCTCTAGGTCCAGGCTCTTATCAGCTCCTTGA---CAAGTGGCAGAATTTAAGAAGAGGGCTACTTTGTGCCCTCACACATCTTATTTTTTTACCCATGAAGTT---AGTCTTATGTCTGTGGTGAGCAGGGAGCATCCAGGAACCCACTTTCCAAGTGAGTCTTTCTTCACACTTCAAAGAGAACTGCTTCTCAGCGAGGGCCAGGTCTGATTTGTACCTACAAGGATCTGTGTTTTGAAGTAGAGCTTGTGCGGGGTTGAAGGACTTTATCTGCTGGGCTCAGGAATGCAGATGGCACCTGACCCCGGGGATGGGTCGGCTAATGAGCACACAGCCCCCACTGGGCCAAGGTCAGGGGAATTCTATCCAGCCAGCAGGACTGGACTTCATCAGCCATCCGGCCCTC----TAGGAGTCACACAG-CAGTCTCTCAGAGGGACGTCCTGGTACCTTTCATCTTCCAGTTGTGATTTGGTCTCGGGTATCATCGAATTACAGTTGACCACACTAGGCCCTGTTTCTCTTCGCAGCCTCCCAGTGCAACGTTAGTCTGAAGAAGCAGAGGAGCCGCAGCATCCTCAGCTCCTTCTTCTGCTGCTTCCGTGATTACAATGTGGATGCCCCGCCAGGCAGCAGCCCCGGTGTGCTTCCGCCGCTGGTGGAGGAGAACGGTGGGCTCCAGAAGGTCAGTGCAA---ACGCTCGACTGCCGCCGCGGGCTCTCTGTCCCATCCTTGACGAACATCCTTAGGAAGACTCTCTGACAGTATGTGTACAGCCATTAACTTAAAGATTTGAAATTGCCAAAAAAGTTCATCATTTT-GTTACAGGATATGTCAGTCATTCCCATTTCACAACGAAAGAACATATTTGATGCAAGTT-----------AGAAGAGTC----------------------------------------------------------------------------------------------ACTTAACATTTTTATCACATTCTGTTGTGGGAGGTTGAATGTatg----------------------------------------------aaatagagagttaaa--gaaccaggaacagacaaagaaatggaaagtccagaggagaaacagaaacttggaaaaaagcagataataaatacaagtggatttaactaccttgtttagtcata--aacatttgttatata a score=4652 s mm7.chr9_random 3782725 144 + 9745104 TGTGTTagattgtcataataggtcagaacccaaaaccacccatgagctgtctgacaga---cacatctgagacaaaatgactcagaaca------ggtaagactataag-aataaacagagagacagcacccagggacaagc--aaagaaaccagg s bosTau2.chr22 39300063 155 - 48330986 tatgtcagatcatcacaataggt-aaaaacaagttctacccacgtgctgtctaacagacatcatattcaaaaccaaatgattcagaacagttcatggtaagagaatgagtaaaaaaaaaaaaaaaattacagaagtataagccaaaaggaagcagg a score=4513 s mm7.chr9_random 3788715 557 + 9745104 TTTTTAAAGAATTCAGTTCCTTATCTTAGTGAAATCTAAAGTGGGGTGTTATCTGCATAACAAATG----CATGGTCTGTGGAACC-----CTGTGGGCAG--CTGACTCCA----GAGGACCCTCTGCCCTTCACACTGAACCCCACCAGCACCCACAGAACACAAGGCTAAGCCACA-------------TAAATTCCAGACCTGACTC--CTGGAGTCTCCAGGGC--TCCCTGCCTTTCTTCGGTCAGCACAGCAGAGAAGATG-GAAGGCCCTGGACAGAAGGGGACAGGTCACTGCTCAGACACCATCCACCCTGAGTATTTTCTTCACCCTGGGAAAAGGAAGGCTAAGGACCTTTATCAACCTGCTTCTGCAACAGCAATTTAAGCTGACAGTCACCA-GGCCACCTCAGCTCTA--------------CCAGC--------------AGCAT--------------------CCAGAGACTAAGAGGAGTCCGTCCT-GGAAGACTCCAATAGTGGTGACCATGGAGGACCCCTAAGAGTAAGGCATCATAAAAGAGATTGCCAGAAACACAAATACACACATACCCATACATACATACCCCCATATACAACAGTacacacacacatatac s bosTau2.chr22 39301991 555 - 48330986 TTTTTAAAGCATT-------------------AACCCTGAATAGTGCATCATTTGCATAATCTGTGACCCTTCGGTGTGTGAGACCAGACCCTGTAGAAAGAGCCCATGTCAAAGCGGGGCAACTCTGCCCTTTGCACTTG-CCTAATCAGGACAC-TGGAACGTAAAACCCAGGCTCAGTAGATGTGGAAGCCAGTTGCAGGCCTGTCTCTACCACTGCCTCCCAGGCCCTCTCTGCCTCTTTGAACTCAGCCTGCTGGAGGAGGAGAGAACGATGTGGACAGAATG------------------ATTCCATGCATCGTGTGTATTTACTATGTCCTAGAGAAAAG-------------------------CTTCTG-AGCAGTGGCCTGGTGTGACAGCCATCGCGACTGTCCCAATTACAGCCTGGACTGAAGACCAGTTGCCCCAAAATGAAAGTATGGAAGTGTGTGCAGCCCTTGCCAGAGGCGAGGAGTTGTTGGCACTCTGAAGACTCCAGTGGCAGAGAC-ATGGAGGACTACTGAGAGTGAGGCAGAGTGAATGCCATTGCTAG------------ATGCTTACTCATCCATGCACG-CCCCATGTTC------ACACACACACGTAAAC a score=12698 s mm7.chr9_random 3789967 667 + 9745104 AGGGGCCCAG---ACTTGGGAGCGTCGGGTTGTA-TCTCCCCCACTGACGGCAGCGATCTGCTTCTGCGTCCAGATGTTGAGAATGGTATCCTTTAGAAGCTTCTGAAGTGAAGTTCCCTGCAGGAGCTGTTGAACACCAGGATTTGATTAGTGTGTGCTATTGTATGGGAGAGCCACAGAGCTCTCC---------TGATAGAGCCTGCTTAGAATCATAGAG---AGACGCCAGAGGGACCTCCTCCTAGCAGAGGAAGGACTTATCGAGGTTGTCTTCAGAGAAAA-GAGGAATTGTAGTTACACCACAGAGGTGATGTCTAGAGAACAGAGACAATC---AGGTGACCATACAGGTCTC--AGCCGAGCT-----ACCCAGAGGTGCCTGCCTTTG---CCATCAGGTTTGGC--CTTCACAGGAGA-CCCTGACGCTGGTGACCTCACACCTTGGTAACCATGGACACATCTTCGCACAAATCTTTT--AGTCAGAGACT-TGAAGAGTACATCTCTCAATCAGG----------------------------------CCATCTGAAGAAGAAAAGAAAATGCAAGAGAATGAA---------TGAAACAATTTTTTTCTCTTGCATTAACATTCATCAGTGA---TACAATGAGCTGTTTCTGTGGGCCAGGCTTCCAATAGCTGGTATTCT--GGACTGAGGCTGGTTGAGACCCTCCCTTGGGGCGCACATATTCTTAACAC s bosTau2.chr22 39303171 714 - 48330986 AGTGACCCAGTGGGCTTGTGAGCCTCTGGTTAAAATCTGTCCCAC---------CAATCT----------CCAGATGTTAGGAACCATAGTATTTAAAAGCTTCTGAAATGCACTTCTCTGCATAAGTTCTTGAAAACTGAGATTTTATTTCATTGCGCTGTTATGTTGGAGAATAGCATGCCTCCACCTTTAATGATGACAAAGGCAGTTGTGAATCCTTAAGACAAGCCCCCAGTG--------TCCTGAGGAAGGAAAGAGCCGTCAAGAGTATGTCAGGAGGAAACGAGCAACT---GTCACACTGCAGAGGTGATGACGAGGGGCTGGAGATAATCTAGAAGTTGCTAAATGGTTCTTGGAGCAGAGATCAGAAATCAGCAGAGATCAGCCTCTGTGTCAGTCAGGTTTGACTTCTTCTCATGAGACCCCTGTCCCCAGTGACCCC---CCTGAATAAAGAAGGATACACTTT--CACAAATCCTTCCACGTGGAAGACCGCGAACCATGCATCTCCTTATCAGGGACCGTGATGCTGTGACCCATTGCCTCCCATCCATCAGCTGAAAAAGAATAAGAAACACAGAAACTGGAAATTCTCAGTGGAGATAAATTTGCTTTTTT--ATTAGCTTTTCTCAGTGATGTTAACATGAAGTGTTTCCATGGACCAAGTCTGGAGTGACTGGCATTCTGGGGATAAGGAATGGTTGAGGCCCTTTCTTGGGACCTGAATTTTCTGAACAC a score=7867 s mm7.chr9_random 3790634 127 + 9745104 TCTTCTGAGAATGCAATCCCTTTTTCTACCAACCTGACAGTAATTTTCTTTTCTTTTCCTCCTCAGGGTGACCAGAGGCAGGTCATTCCCGTACCAAGCGTATGTATCTTTATCCAGTTCTCTTAAA s bosTau2.chr22 39304402 127 - 48330986 TCTTTTGAGAATATGATCTATTTCTCTTTAAATCTGACAATGATTGTGTTTTTTCTTTCTCCTTAGGGTGACCAGAGGCAGATCATTCCCATACCAAGTGTATGTATATTTATCCAATTTTATTTAA a score=9339 s mm7.chr9_random 3791636 938 + 9745104 TGATTCTCTATTGGCCA---TGCCTAGGAGCGGTGGGCTTCGTTGG-ATCTTAGTCTGCTCA----GGCAGGTCAGCATGTTAGCCA--------TTTGACCATGGTACCCAGCGGCTCCATAGCAGGGGGCTTCCTCTAACCTTCATAA--AGGTAGTCTCACACATTTTTCTTACACATGTGTGTGTATTAGATAGAGGGCAGCAG-------CCCTTCCCCAATATCAG--------------------TATCTCCCCAGGTGACCAATGGGCTGTCTGTAAAGCTAGATGTTTTA-CAACATCTGTGACCCA-TACAGACCCTGCTGAGGACAACAGCCCTTACCCCAAAGATGC------AGAATTCCCGAGTAAAGTAAATGGGAGCCAGGAGATTCTTTGTGTAATTTATCTCAGCACTGCATCAATAAACTGCAGGCAGGCGC----TGTCAGAAGGTCGGTCAGGTCAGGTGACCGGTGGGACTGGTTTCTTTAGGCTGAAGATACTTTGTGTCTTTGTGTTGATGCTTTCCCCCACCCCCACCGGGAATTgcctgtgcaggttaaaaagcactctccactgagctacatccccagccccAACTTGCATCTTTAAATGAT------AAGGAAGGAAAACTCTTCCTTCCACCGGGCAGTGCCAC---ACCTGCACTGCCTGCTCAGCATACAAGGCTGAGAACAAGGGCATCTGG-GCTCGGTTCAGACCTGAGATGTAGATCCCAGCACGCCTGGTAAAATCTGTACTGACTTCCCAAGGGCCCAGGTCACTTCGGTAG-AGTCCTGTTCTTCCTGGAGCAGAGAGGGTGCTGGGAAATACTGA-----------AACTGGGGATGCTGTATCAGAGGGCTAGATGCCTAGCTGGGCAGGGGAGCCTCCAGATC--TCCCTTGGTCTCCATAACGACTTC-TCCAG-AAATAAAGAGCAAGAGAAGTCTAAGGCCACAGGTGCCCGGGG------CAACTGCTGGTGCAGAGCTGTT s bosTau2.chr22 39305868 925 - 48330986 TGATTCTGAATTTGCCAGCGTGCCTAGGGTT--TAGGCTTTGTTGGGAACTGACTTGGATCAAAAAGATGGATCAATCCATTTTCTAATCCAGTGTTTAAGTAGGGTACCCAGTGAAATTGCTACCAGGGTCTCTTTTTAATCTTTATAACAAAGTAGTTTTGTGTATTTTTCCTGCAAGCATGTCTACATTCAACAGATGACAACAGGTGGTATCTCTCCCCCTACCTCTGGTACTCTGATAGCTCTGGTTTTTTTCCAGAGTTAATTCACAG-CTATCTATAAAGTTAAGTGTTGAATCAACGTATTTGTCAGGGCAAACACTTTACTGAGACAAATGACCCTTTCTCCACAAATCTCTTTCTAGAATCCCAGAATAAAATAGCCAAGAGGGAAAAGATGTCTTTTGTAATTTAGCTCAGTGTTAGGTTAGTAAACTGTAGACCTTCCCTACATGTGAGACAGTGGGTCAGG------------------------CTTTAAG--------------------------------------------CATCTGAAAT--ACTTTGCAGGAAAACAAAGCCTACCCAAAG-----------------TAACTCACATCTTTGAATGATCACCTCCAGAAAAGCAGG--------TCCACTGATGGATACCATGTGACCTCCACTGGCTGTTTAGCAGGGAAGACTGAACCCAAGCCCAGCTGGAGGCCAGCTTTGCCAAAGGATTCGAGCCTTTGGGTCCCCTGCAAAATCTGCACCTACCTGTCAAAGTTGCAGGTTCCATAAACAGTAACACTGCCCTG--TGGTCCAGAAAGGGCAGTGGTTAGTACTGAGAGCCCCTGAGAGCTTGGAGCACTGCCCCACAGGATCAGAAGTCAGGTTTGT--ACTGAGCCTCCAAACCAAGTCCTCATGCCCTGTAAAAGCTTTGTCCAGCCCATGAAGACAAAGGTGCCCCTGAGCCTGTAGGTGCCCAGAGGAGGTCCAACTGGAGGCCCATCGCTGCT a score=-2601 s mm7.chr9_random 3792621 236 + 9745104 CTTCTCTC-ATTTACA--------TGCTGGTCT------------------CTTCTCAT--------------------------------------------GTGCAAAAGTT-----------------------------------------------TCAGACTTTGAGCTT------------------------TTATTCAACAATAATTC-------AAGCCAGTAGTTAAATTTT-----------------------------AAATGCTGAAAAAAATTAACATGAAAGGGGAAAAGTCCTCCCA-------TCAGCCCCCACGATCCTACTGTAA--------GCATCATAGATGCT------TAGGTGACGTCCCCCTCTCAGAAAGTTTCCAGAGAAACACATACATGTTCGCACACATGAG s bosTau2.chr22 39306946 431 - 48330986 cttctctctacttgcagcaagcagtgctgctctctgttttcagtgtgccggcttctcattgctgtggcttctcttgtttcagagcacgggcgctggaacacaggctcagaagttgtggtagacaggcttagttgctccacagcgtgtggggtcatcccagatcaggcatcaaacccgtgtctcccgcgttggcaaacagattctttaccactgagcccccagggaagcccTCATTCATATTTTTTCATTATTCAAAGTCATGGTTTAAAAAAAAATACTG--AAAGATTAAAATAGAAAAG--AAAATCCCCCAACTTGATCTCACTCCTTAGAATACCCTTCTAGTATTTGTTGTATATTAGAAACTAGTATACTAGTATTTTCTGTATGCCAAAAACTTTCTAAATCAACACAAGCATCTTTAAACAAGCGAG a score=8865 s mm7.chr9_random 3792904 459 + 9745104 GCCTTGAATAGCCTTCCACATACCAGCATCC---GCACTTCACCTCGTTGTAGCGCATAGCACTGACAGCGTCTGCTCGGCTGCCGTCTGCGT--------------ATGTTCTCGAGCTTTTGTCGTGGGAGTATGTGTGTGTGCGTGG----ACCTCTATAATCCAGTCCTAAC--TGAAAACATGGGGCCCAACAGCATATTCCACATTGTTAGT-------TATCAGCTTGCCCTCCAAAACCTGCTAGTTTATGCTCCCAGAGACAGCCTCTGACACGACCCCATTCCCTTGCCAAACTTAGTTCTCAAAGGCTTTTAAAACCCTTGCTCATCCAAAAGTAAAGAATGCTGTCGATTTATTGCTTTGACTGGCATTACTG-ATCAATGAATATGAACAGTTTCTC--------ATTGGCTGCGCACCTTGCTTCTACACTGTCCACCTAGGTTTTATCTTGTCTACTCTTTTTTTAAATGTTTGAGAAGTGTG s bosTau2.chr22 39307410 463 - 48330986 ACCTTGAATATCTTTCCAGATATTAG--TCCGTAGCAAGCTGCCTCATTGTTTTACATGTAGttgatggcatttacttggtttccacttctgtgctcttaaaaataaatattcttgtgcttatgt-------gtttgtgcacctgagtgatagtatctaggcgatcagttcctagttgtggaaatactaggtcaaagggtatactgtatatttttggtagattaaaggcaatttatcctctaaaaac--ctagtttaaattccca-------------ccaagagtccattcccttatcaaaaatggtagttaggaaatactgtaatctttgctgatctaaaagtaaagaatggtatcgatttattgctttaattggtatttcttcctgaatgaatatgaacatcttttcacaagtttattgtacatgtgtatttctccttCCCTATTCA-------TTTATACTGT----TATCTTTTCAAACTTCAGGGAAATTAG a score=4017 s mm7.chr9_random 3793478 176 + 9745104 cacacacacatacaTGCATCACGTGTGTCTTTTGACCTTGCTTATAAAGAAAGAAAGAAATTTTGCCACAAAGAAATTTTGATCTTTTATAGGTAAATGTAATGATCTGACTCCTG---TTT---CTGTGTTTAGAAAGATTTGCCCAGTCTATAGCCATGACCCATGACCCATGTTCTCTT s bosTau2.chr22 39307873 162 - 48330986 CACTCTCCCCTAAATTTATGA--TATATCTTTCGGCCTTGTCCAT---------AATCATTTTGGCCACAAAGAAG-TTTAATTTTGTATAGGGAAATCTTTTA---TGGCTTCTGAACTTTACATCATGCTTAGAAAGATCTCCCCACTCTATGACTGTGAccca-----catcttctcct a score=2432 s mm7.chr9_random 3794027 90 + 9745104 CGGTATAGCAGAGCCATTAAATCTCTGAAAGGGGAGGTAGGAATTGAGTTGTCAACCAGCCTGTGTTCTGTGCTG---------AAAACATCTAATAAA s bosTau2.chr22 39308497 99 - 48330986 CAGTGCAGCTGAGCCATAAAAATGTTGAAAGAGAAGAGGAGAAAGTTGTTTTCTAACAGTTAAGTTTCTGTGCTGTTGGCTTAAGAAGCCTTTAATAAA a score=16881 s mm7.chr9_random 3794823 895 + 9745104 AAGGCCCTTCCTGATGTAACGGGTATTTTTCTGGACCTTAAGCTTTATGAAGCCCTCACTCAAAGATTTGCTTAA----CTCTTTGAGTGAATGATTCAAG-ACCAGCT-------------AAGTAACGAAGCCCTGGGGTGGTCTTACAGTGTCAGTGTA-ATGCCAAGAGCACAGC---TCTCCAAAGG---------TCATGGTGGCAGACTGGTGAATTCACGCTTCTCTAGCAT-GGGTTCCTGGGGAAGCTGTGTGCATTTAGGAAAATGGCAAGGGCTTAGTGGGGCCCTCTCTCCTTCACAGCTC--------------CTCAGCCTGGCCTTGCCCTCTGCCGGA--------AAGTCAATAGCTCGAGTAACA-AAGTCTCACCCACCTGGTCTTCTTTTCCGTGCATCATTGGTTCAGGGACATCTATGTTTTTAATTACTCTTAGCTCACA-----TCTGTGAAGTGTGGGTCATGTGTGCTAAGGAGGCCATTTTTAGTCTTGGGCTCGGAAAACCACGGAGCCCCTTTGGGCAGATCCTTGGTGGTTTCAGATCTTCGAGGGGTAGAATTGCTAGAGGCTTGTTTTCCAGGCTAGCAACTTAAACGACTAAAGTTATAAGCATTGCTTTAGTAGTGTGTAAA-GCAAGGGGGGTGGACTGGAGGGATGCAGGCTGAACATAGGGGGTCGGGGGCCTGG---------TGGGATGGCTAGAAAAGGAAA-----GGTTCTCACCTGTCCACATTCTTCACGGTGAGACTGTATCTGTCTTACATGATAGTGTGATA--AAGTCAAAACAAA---TGTTATCCCGGTCACATGCATACCTACTGCTGGGGACTGCCCA-----------------TCTCTTGTTTATGTTCACTTGTGGGACTGACTCTCCCTGCACCCAACAAATCTCAACCCTGCTTGTAAGATAAAATGTTTATCTACAAAATTTCTTGCAAGTTT s bosTau2.chr22 39309019 946 - 48330986 AAGCTCCTTTTTTATATGCTTGGTGTTTCTCCTATTCTTCAGCTTTATGATGGTCTGAGGGAAA-ATTTGCCTCAGGACATTTTTTAGTTAATGATTCAAGCATCACCTGAGCAGGTCACTGAAGTCACAGAACACTTCTGCAGGTGTCTAGCGTCCTTGCATGTTCCGAGGACACAGCAGCTGTCCAGGAGAATTCTTACCCATGGT------CTGAAGAATTGGCAGTAATCTAAAGCCGAGCTTTCTGGGAAGCTGCGTGCATTTAGGAACCAGGCTGAGGATTAACGAAACTCCACCCCCCACCCGCCCCGCACAGTGCATGGCCCCAGCCTGGCCTTGTTCTCTGCAGCACAAATGATAAATCAATAGCTTGCTTATTATGCCTCTCACCCCACTCACTCTTTTCTCTCTTAA--AATAATATGGGGAGGC-----TTTTTCCTTACTGGTAATTCAAAGAATGCTTGTAAAGTGTGGGTTAAATCTGCAAAGAAAGTAATTTTTATTCTTGAGCTTGGAAAATAACTGAGCCACTTTTGGCAGATCTTTGATGTTTTCAGATATGCTCGGGATAGAAGTTCTAGATCTTTATTTTCCAGGCTGGCAATTACA-----TAAAGTTA-AAATGTTGTTTTAGTC---TATAAATGCATAGAAAAAGGTCTAGGCAGATACACACCAAAC-TAAGAAGGGGGACACCTGGGGAAAGGAATGGGGGATATGGAAGAGGGAATACTTGTGTTTTATGTGTCTATATTCTTTACAATCAGAATGTGtttttattacataattatgaaatagaaaattaaaaaaaaaatttttattttCGTTGCAAGTATGTTTTCTGCTATGGTCCACACAACAGAAATAACCCCAGTTCTCTATATTACGTTCATTTATTGGGCTCATTACACC-ATACCT------TTTTAAATCTCTTTTTGA---------------TACAGAACTTCTTGCAAGTTT a score=2019 s mm7.chr9_random 3795749 369 + 9745104 GTTTTTTTTTA-----------------------------------ATGGTGGAAACAGCCCCCCTCA-GTCCCTGAATTCCATGTCAGCTGCCAGGGGACATCCCACCTCCCTTGCTGGTGCTAGGGGGCCCTGGAGGAAGA-----GCAAGCTTTAGTTAAAGCTGTGAGAGATAGA--TCCTTCTGGGCCTTTTTGTCTCCATGAT-TTGGAAAG--------TTACAC---CAATCCAGGGAGCATCCTAGAGTTAGGGCTGCCTATGGCCTTGTGCAGCAGCTCTTCTTGCTCAGCCCCTCTG----------CTGGGTGATCATGGTGCCTGCTTCCTTCGCTAGCCTCCCGACTG--TGGTGTGCAGTCACTGTTGGACTAGCTAAAGTTTAATTTTATTTTCAGTCCTGGGACTAAACCTAATGCCTC s bosTau2.chr22 39310146 406 - 48330986 GTTTATTTTCATTTTTTAAAATATAAAAGTCGCTTGCTGATTTGAAATGAAGGTCAGAGTCCTTTCCATGACCCTGGATCCCACACC------CAAGGTCTAAGACACGTCT-TTCCCAGAGCCACG---CCATCGAGGATTCTGCCTGTGAGCATTCGTTAGCGCCAAAGGAGTTGGGAGGCCATAAGGGCCTTTTCTCCTGGGTGATGTTGGAGAGAATGAAGCGCACACACTCAATAGAGAGAGC-CCCTGGCGTTAGAAACGCTCCTGTCTCCACACAG-GGCTCATCCTGCTCAACCCCACAAGCCCTCCAGCCAAGATAATCACTGCATTTGCAAATTTACCTAACCTGTTGACCGCCTGTGTTACATTCACTATTGAACCAGCTGAAGTCCAA------------------AATTAAAACAAATTCCTT a score=9882 s mm7.chr9_random 3796316 458 + 9745104 AGAGGGGGAAGTATCAGCCACTTTAAAGGAAATACTCCTGATTTCAGGCTTGCTCTTCTTGCTT-----GAAAAACTCTGCTGTTCATTCTTCCGTGGCTGAGTCTAGATA-----TTTAATTATGTTTTGTTTTGAATCAAATATTAAACAG-----------TTTGCAGGA-AAAAAATTAACTAGTTAACTTTAGGCACGGAACGTACCACAG--TCAATTAAAATACTTCACATTATCTCTGGAATGAGGCAGAGCCCAAAGAAATAAATACTCAAAACAGAGAA----GGCTGGCTGAAATTACAGAGCAGTGTATTAGCTCTTTATGACC-CATCACAAGACAGCAGTCAGCTGCTGTAAA-GACTCTTTGGTGG--------------ACACAGCACATGGATTGGAGTCTAACT--------CAATCTAAGAGGCACAGATGTCCTATCCATTCAGTTTCATGCCACAGCAG-----------------------CGCGGGTGCCAGTTTAAACTTTAATACTTG s bosTau2.chr22 39310591 530 - 48330986 aaagaaagaaaga-aagCCATTTGAAAGTAAATACTTCTAGATTACTTTTCTTTCTTCTTGTTTTATTTGATAAGCTAATTTGTCCATTCTTCAGTGGCTTGGGGCAGATAGAGATTTTCTTGTTGTTTTGTTTTGCATTAACTCCAGAACAGAGTCTGACCTTCCTCCAGGACAGAAAATTAGCTAGTTAATATTGGGTAGTGAATATGCCAGAGAGTAAACTGAAATGCTTAAAATTGTTTCTAAACTGAAGCAAGGCCCAA-GAAATAAATACTCTAAGTCAAAAATTGAGATTGGCTGAAGATATCCAGCATTTCCTTAACTCTT-ATGACCTCTTTACCGTAAGATTGTCAGCTACTACAAAAGACGTATCAGTGGGTTTTCTGGTTAACACACAGCATGTGAATTCAAGTGTGACTGCCAGGGACAGACTAAAGGGATGGAGCGCCACCTTCACCCCGTGTTGTACCACAGCGGGGCACGCACAGCACAGGGCACTGCGTGTGGGCCAGTCTTAGTTCTGTTTCCTG a score=26282 s mm7.chr9_random 3796915 1280 + 9745104 agtagctcacaactaccacctgtaactgcagtt--ccagtaggtctgacgc-cctcttctggactctacaggcacttgcatacacaaagcacacatacagacaagcaggaacacataaataaaaataCCAGTCATTGAAGGGAAAAAAAAAAAAAAAACCCGCAGGTCCAACCTAGCTCCAAAGTTTCCTGAGAGGTTACAGTGAGTTTTAGGCAAAATACAACCCCAGGAAA-AAGGCCCATGAAGTCTAAATAACCATTACAAGTAGA------TTCTGATGGAATCCattttaataataataatagctattaatattattattattattaataGCCACCTCATGCATGCCAAGAAGGACCCTGGCTGGTTTACTGTGGGTATAGCTGATAAGCATCTACCTTACGTGG-AGGTGTTATCATCTCA--------------------GCTAATTAAAAATA----ATGTGTCTGCCGTGATATTGAAAGCTCAGACTTGACGCCAGAGCACAGACCCTCACGGTAG----TCACAGAAAGGCACTGTTTCAGGGGGGCAGAGTTTCCACTGCAGAAC----CCTGTTACTACTTTTAATAAAGCCGTGTGATAAGCTTAGCCAGGCCTTTGAGTGCTTGCTTTTGTTCATACCCTCACTAATGTGATCACCGTGGACCTTAGGTTAGTGTTGGGGAATCAGA----CTCCTACATTGAGCTTATAATATTGATTTTTTTTTTCCCTCTTCCTTTAGCCACCAGCTAAATACCTCCTTCCAGAGGTGACGGTGCTCGACTATGGAAAGAAATGTGTGGTCATTGATCTAGACGAAACCCTGGTGCACAGTTCGTTTAAGGTAAATCC-CACAGGCAGTATCCCTTGGGGGTGTATGTGACTTCATCACCATCCCGTGG---------------AAAGGGTGAAAGCTTGTGACTGCTTGTTATA--ACTTGACTCCTCAGGAAGACACCCCAAGAACTCAGGGTGACGGTTAGACCTATCCTGTTACCCAGGTGAATATGGGCTGCAATAATTGATTATTAA-GTCACTGGCTTG--AGGAAGCCCATTGGCTGGGCTGCCAGTGTCTCTGAGATCTCACCGTTTCCTTGAGATCTGGGCTTCCC--CACTCTAAGCCCTGTAGAAATGCTTTTAGGTTCAAGTGGCAC-AGGCAATCAGGGCACCAGGA------TGTGACGTTTGTTGAAGGAACTGGAGCATTGTGCATTTTGT--------TGGGTGGTGCACCGGGTGGGTAATGTTGAAAACTGTCTGGTAGCCCTGCTGTCCTGGGAATGTTCCCAGATCAATTTTTGAACAATGGTGGGTAATGTGG s bosTau2.chr22 39311328 1209 - 48330986 agtgactTTCAGTTTTCACTTTGGATTGCATTTTGCTGGTGGTTCTATAGTTCCTCTTAAAGGTTTTTCAG----------------------------------------------------AATTTCAGTCACTTAA--------------AAAAATACTATGGTCCAGTATAGCTCTAAAATATACTTACATACCATAGTGAGTTTAAAATGAAATAGGACCCCAGAACATGGGGTGCATG--GTTAGAATAGCTGTTATAATTGAACATTCATTTTCATATTGTCCATTTTAATAATAGCAATAGCTA----------------------------CCACACAtgtgccaggcagaatgctggatgttttacttcaattatagctgataa----caaccttttatggtaagtattattctcccaactcagagccaagaaacagagctgatgaaagagagcggatattccagcc----------aagctttgtct-ggttccaaagcccaggccctCATCATAGCTGTTCAGACAGTGGCACAGTATTTGTTTGGTAAAACTTCAGTTGTAAGCTACTTCTTCCTATTGTTTTTAATAAAATTCCATGATGCACCTAACCAGACATTTAAATGTTTGGTTTCATTTCTAACCTCACTG------TCATAGTGTAACACA----ATAATAAGGGAATTAGTTGATCTTTTATATAAAGGTAATAATATTGATTTTTTTTTCCCCC--GACTTTAGCCACCAGCTAAATACCTCCTTCCAGAGGTAACGGTGCTTGACTATGGAAAGAAATGTGTGGTCATCGATTTAGATGAAACATTGGTGCACAGTTCATTTAAGGTAAATCAACATA---AAAAACGATCAGTGATCTTTGTGATTTGGCTACAATTGTATTGGAAAATGGAAAACTAAAAAGATGAAAGCTTGTGGTTTGTTGGCATATGACTTCACTGTTCATAAA---ATCCCA----------GTAACAGTTGG--TTAT----TAACTCAGGTGAACATTAACTCGAGTAGTTGAATATTAACATAATTAGTTTGGGAGGAAAAAAATCCACTGGGCTGCCAATATCCCTGAGACCTCA---TTCTTATGCAGTTTAAGTTTTCCAGCACTCTGCCCCCCGCAGAAATACTTTC-----CAGGTGGCACGAGGCAGGCAGTGCCCCAGGACACCGCTGTG-TGTTTGTCTGAGTAACTG-AGCACTGTGCGAGCTGCAGGTTATATGGGGAATGACAAGGGGAGACACAGTTGAAAACTAGCAAGCAACT-GACTATCCTGGAAATTTTCCCAGACCAAGTTTTGGAAGACTTTCAGAGTTACGG a score=12958 s mm7.chr9_random 3798423 809 + 9745104 CAGGGG--CTTTCTGA-------------------------------------------------TCTCTATCCCTGCTCCATCT------------CATTCGGGAGGGAGCGGCAGTGGCTACATT------------GTTAATTCACCGCTC--CAAACAAGTAGAGTTGTTTAGAAGAGACAAATGCTGGCACAT-------GTGGGTGAGTGGTGTGTTGGGG-AGAAGCAGGGGGCATACGAG--CTTGGTTCTCATCTTTCTGGACTATTCCCTGTCAATAAAACTATTCTACC----CTGGTCAGTCTCAATATGTTCCTCATGCC--CCACTGCCTTGGGATGCCTCTTACTTCGCTGAGAGA--TGCAACTGGCTCCACCCATGATGA-----GTGTCTCAGCGTGAGCCCTT--GTCATTTCTGGCAGGTCATCAGG------CAGAAGAATCATTAGATTTACCT------------------------------------CGCATCTT-CTCAACGAAGGCT-------CAGCACGAGGCCAGGAGGCCATCTTTAAGGGCTTGGGAATATAGATAA---------------CCTAGCAGTGAGAAAGGACCTCGTTCTAGCTGCTGAGGCTTGTAGGACCACCTCATTACCCAGCATTCCAAGGGCCTGGCTCTTCCAGGATTGTGTTCCTGGGGCCACAGTGGCCTGGAGTGCAAGCTTGGTTCTAAATGACATTGCAACATTTCCCTTCTGTG-AAACAAGCAACTGGGGGCATC-------------------AAGCCTTTCAGAGCAGGGGTCAGCTTCTGTCGCAGCATAGAGAGTGCCCTCCCAAGCAGCTGCGGA------------------CAAGCTGCCCAAGATTACCAAGGGTTCCTGGCTCCAAGGCCAG-GCCTTGGCAG-CACTGGTGTCTC-------TGACCAGAGGGCATGGCCTCCCCAA-GCTGTAAATAAAACTCCCTCATTTCTTCTCT s bosTau2.chr22 39312897 1009 - 48330986 caggggatcttcctgacccagggatcgaaccagtgtctcttaggcctcctgcattgcaggcagattctttactactgtgccacctgggaagcTTGGGCCTCTAGGAAGGAACAGCAATGGCTGTACTCCTAAGAAATGAGTTAATTAATCATTTTTCCAATTTTTAAAGTTGTTTGAAATGAGCAAATGATGAAAAAGTTTGAGAATAGGGGATTGGTGCGTTGGGGGAGAAGCAGAAAGCGTATGGGGTCCTGGTCCTGTTTTCCTTGGGATGTTTCCGGT-AATGGAACTGCCCTCCTGTTGCTGGCCAGTTAGACCATTTTCCTC-TGTCTACCACCGGCCCATGACCCTGCTGACTTTGCTGGAAGACCTGAAA---GCACCACCTGAGATGAAGGGTGTGTCTGA-CACCAGCCAGTCAGTCACTCCTTGATGGCGGTATGGGAAGTGCAAGAGAGCTATCAAATTTTCCTGCAGACCTTTCTGCCAGAAACATACCTCTTTGGGCCTGCTTCTCACTAAACAGAATCCTCCTTGACAGGTCGGGGCCAGGCAGTTGTCCTGGAGTCCTTGGGAGTGTGGAGGAGGGGCCACACACCCTCCTGGCAGTGAGAAATGGCCTGG--CTGACCACTGGAGCATATGGGTACCACTCATTCCACAGCCTCACATGGGCCT-----TCCCAGGATTGA--TCCCAAGGATTCAGTGACCTTATATCCCAACTCAACTGTGAACTGCATTGGAAGCTTTTCCTCCCCTGTGGGCAGGATGCTCAGGACTTTCTCACGTCCCTGAGGAGCAAAGGCCTTTAGGGCAAGGGTCAGTTGTCATCACAGCATAGCCAGCTTCCTTGCAAGCAGCTCTGGGAGCATGGGCATCACCAGGCAGACTGCCCAAGGTTACTGAGGGCTCGTGGCTCCAGAGAGGGAGCCTTGGGAGGCCCTGGTGTTTCCAGGGCCTGCTCAGAGGGCATTGATACACAGGTGATGTGAATAACATGTCTTCATTTCTTCCCT a score=1983 s mm7.chr9_random 3799410 174 + 9745104 cactgagctatgtctccttgctgagccatcttgtgggcTTGGACCAGGCTGCTTTTGCAAGTGGAATGTTCCTCATGATATTTAATGTTTTCTGAGCATTTCAAAGTCTCTTGGGGATGTGTCCACCGTGAACCCCTCTCACGTGTGACTCCCGAGTTCGTGGAGTCGGGAAAA s bosTau2.chr22 39313906 132 - 48330986 CCCTGAGCT-------------------------------------GCCTGCATCTTCAAGCAGAATATT--GTATGATTTTTAAGGTT--CTGGGCATCCCAAAGCCCTTTGAGAACCTGAAAGCTAAGAACTTCTCTC-CTTGAAACTATAGAGCACACAGACCCAGAGACA a score=59595 s mm7.chr9_random 3799699 3760 + 9745104 CAAAGCCTTTGACAACTTCTTC-TTCAG----TTGTTTTCTCTGATTTTCGTAATTCTATATTTCGGTGGTAACATTATGAAATTTTGAATTCGTCCCTCGCCTTCCTGTCC------TGGAAACATT---AACTTCGGGCTTAAGTAGCGCTCCCGCAT-CTGAGCATTTAGTCGCGGGTCTAGTCTACCGCAGTCCACAGTTTT-CAGTGTATACGTCAAGGGA-AATGTGTGG-TGCACTGAGGGGCTTAGATGTAGACCC-GGTTTACAGTCTGACCAAAGGTTCTGCATGTCCTTCACC-ACCCGGTGGCCACCATATGCCCAAGTCGCTCTTTCCCTAACGTCTGCAGGGTGACAGTTCTTTTGAGCCTCTCCGTTAAGTTTTCTAACGTGTGGGATTCCATTTAGAACTGCTTATGAGCCCGTTGTTCAATGACTGTGACTGCTGAGGTAATATTTTATTTTTCAAAT------------------------------------------------GTGTTTAATACTAACCAAGGGTTAGGTTAAATGCCTGTGAAGTTG-TAGGTAAGCTGTCTTGTGTTTCTTAGAACAGAGCAGT------TAGGCTGGCCGTCCT---------------CCAATCCCAGAGTAGGAAAC---CAGGCCAGGCCACCAGGCA---GGGCCTGAGGCCTGATGGAGCCGTGGGGACCCATCGCACCCACCACCATAACAGTTGAGGA--GCAGATGCTGAAGTCCAGAGGGGAATG--TCTACCCAGGATATTCGCCTGTGGCATCTGGCTT------------------------------------------------------------------------------------------TCCGCCTGCTGTG------------GCTCTGTCCTCTGAGC-------ATCCT------------GTGCCAAGCTGCCCA--CACTCT--------GAGTCCAAGGACAAA-----TTGCTTTTCCAGTG--------GTAGTGACAACT--------------------GGCCAGCAGGCATTCATCTCTGCCCCCTGGTGGCCATCAGTGGTCCGTCCCCGTCCCCCCGTCCCCCATCCTGTCTGGGCTCCAGGCTGGAGTCTGAGCAGCCCCATTCTCTTGCCAGACTATGCCACCCTTTGCAGTTGAGGC-AGGCAGGTGTCCAAGAGATTGGGCTAGATGCTGGAACTCCAGGACACTCAGGACAGGAAGAAATACTCCTTCCTAC--ATGTTTATTTCAAGGACCCAAGGCCTCTGCCAGCATCCTTGTGAACTATTTCCTGCCATCGTCAAAACATTGGTCCAGGCAAGCTTCTTTCTTGCTACAATTTCCAATTTTCTCTT-TCCTTTCATATGTATTAATCACAATTTCTTTTCTCTCTAGCCCATTAGTAATGCTGACTTCATTGTTCCTGTTGAAATCGACGGAACCATACACCAGGTAAGGAACCAGAGTTAGCCTGCAGTTCCAGAGAGCATTTTCTT--GTAACCACACTCCCTGGGAACATCATTTTTTCAATTCTCACTTCAGTGGCCATTTTATTCTAACTTCAGGAAACAAACTTTGTATAATAAGTATAgtaagccaggcatggaggcagaggcaggcagatctcttgagtctgaggacagcctggtccacaaagcgagtccttgtacagccagggctacacagagaaaccctgtctcaaaagctaaataaaaATACTGTGAATGATTCTCTGCCTCAT-------GCATGCATTTGCTTTTTACCGTGTTTATGAGGA---CCCTTTTCTGTTAATAAATATTAGGTATGAT-----------------CTCTGATTTGATTTCAACTTTTAGGAGCCTTTGTGCAATCCCCTAGTTGTCCCCACCGCTGGCCGGGTTTGACA-TCTGGTCAACTTCATCATGCATTTGCTTTTGGCT--TCTCCTAGCA----ACAGGAAAATGCCACCAGTCACCCACTG-ACGGAGCATTCTTGGGAAAAA-TGTCCACTTTGATGCCAACTGCTCCCGTGAGAGCTTCTCTGCCC---ATGTGGTTTTCTCCAGTGTCTTTTTTAGCAAATACTCAACCCA---GAGCAAAGGGGAAGGGTGTG----TTAAGACCAGCAGGGTGCTGTGCATAAAT-TGTCATCGTCAGCTGGCATCAATCTTC-TTCCGGTTTTTGGGGTTTTCTGTTTTGGGGttgtttgtttgtttgtttgtttgGGGGAGTTGCTTCTTCTTTATTTTTTCTTCGTCATCAGCAAGCTCTTCTGGAAATGACTTCGTCTATGAATACATTAGAAACATGGTAGAAAAGCTCGCCTTGGAGGTTAAGGTAGATATAGTTTTGCCACATGTTTCTTAGGAGTGATGGGACAGACTGTCTCCCCCATCAAACTCAAGGCCTTAAGGGGAGAGTATCTGGCCT--------CATATCCCAGGAAGGGACAGACATTTCCTGGTTCCTGGGCCACA-CAGGAT-----GTCATTTCTTAACGATGCCAATAAGGCTCCTTAACTCTTGAGTGCAGT---TTAGAACAATCCAGGGCTGTGAAATCAGCTGTTTTAGCCATTCCGTTGCCCAGACAG-----------------------------------AAGGTTATA---TATGACAATCATCAGGATAAGATTTCCTGACTCCTAAGCC------AGGGCTCTTTCCTTAG-ACTTG-GTTCCCCCTGTCTCCCTTACC------CCCACCTAGCTCTCTATCCT--GTCCTACAGGACATAGGACCTGGGAAGG-----------------TTTCAGGCACCTGGTCACTTACCATTCAC-AAAGCACCAACTGAATTAACTCCACCCCCGCCATGCAGTTAGGACCTCTGCGCTGGTTGTTGTGTCTAAAGTCGAAGAGTCCTTGAGGTGAGGCTCAGGAGGA-CTGCCCA----------------------AGAAAATAATTC-TTCACACCACGTGGCCACAAGCACGTCCGGAGTGCAGGACC---------------------------------CACCCCGGCTTCCCTTGCCCCT---------------TCTCTTTGGCAGTAGACACCCCGGGCATCAGGGCTGGGAGCAGAAACTC------CAGAGAGAAGGAAGGTACAAAAGCT----GGAGGACCGAGGCCCTGGCGAAGGCCGTGGCCTCGTTCAAGTAATCCAGGATAGGCTGTGCAGGTCCCAAGGGGCCTATTCTTGGTTACTTGCACGGGGACGCGGGCCTGGACGCCGGCATCTGGGCCCAGGAACCTCCTTTCTGCTAAAGGCGGCAACAACAGAGTTTCCCCCGTCCA-TCTCCAACCCTTTGCCTGTAGCCAAGCTTGCTGGCCAAGCAGTCCTCCC---GGAGACTCAGGACCGGAGGCCACACCCAGTCACTGGCACCAGCAACAACGAGTGTTATGAGCAAA--GCAGGTCCTGCAGCTGCTACAGCCACACAGCTCTGCCCTCAGCCTAGCCCAACACCCCAGCTCAGCAGGATCCTGGTGGCACCCAGGATAGACCACCTATATTCCTCTGGCCCCTCTCTCCACCCTCAGCTGCAGAGCCAGACCCCCAACCCACTCCTAAAGCTAGCCAGCCGCTTTCTCTCCAGGTCTTTGCCCTAGGAAGCGCCTTTTCCTGGCATGCTGCAAAGCAGTGTTTCCATCTAGGAAGTCTGTCCTGCAGTGTGTTTTCCTTGCATGGGGTGCAGTCTTGTGTCTCCTCTCCCTTTCCGC-----AGCCCCCTCCCCTGCTCTGTCTGCCCTTAGAGGCCCTGTGGCTTACT--------GCTACCTTTAGCTCTTTACCTTAACTGCTTCCTCCCTGAGCAGCCTCCAGGGCTTCTCTCACTGCCTATGGTTGGCTGTGGACACAGGCTTTGGC------CCAACACAAACCCAAGTGTTGTGACGCTTCCGATCCTCACGTTCACACT--TTGCTCGGGTTGGAGGCTCAGCTCTCTCTCTCTCTCAGCGT-GTGAGCTCCTCTTTA---TTCAAGGTCAAGGCCAGATGTTGCTTTCTGAGACGCCCTC----TGGAAGGGAGAATTATCTTGAATGAATACCCC----ACTGTGAGATTTC-----------TTGTGTTCACTAATTTCTGTCAGTGTGTGCTCAAGACTGAGTGAGCTGAGCCGGCAAGGCC s bosTau2.chr22 39314088 3790 - 48330986 TAGACCTTATGAGAACTTCTTCCTTCAGCTTTTTGTTTTCTCGGCTC------ATTCTGTATTTTAGTTGTGAAATTATAAAATACCAAGCTCATCCGTGACCTTCCAACCAAAGCAGTGAAGAAACTGTAAGCTTAAGGCTCAAGT-GCTCTACTGGATGCTTAGTACTGGTTCTGTGACCCAGTATTT-----TCCACAGTTTTTCAGTGTATATCTTAAAGAACAATGTGTGGGTACAGTAATGGACTTAAAGGCAGACTTTAGTTCACATTCTCACCAGAGACTCTCTACCCTCTGCCCCTGCCCAGGGACCATCACA---CCCAGTCTCCCTCCTTCTA------------------TTCCT------CTCTTCCTTA---TCCCAAGGGTTTGTGATCTCAT-----GATTCTCTTGGGCC---TGTTCATTTCC------------------ACTTGATTTGTGGAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAATATG---------------CAGATGTTTGTGACTGTGCTAGGTA-------TTGTATCACACAGTGCAGAACAGTCTAAGGTGTGGTGGCTCTCCCACCCACTCCACCCCCCCACCTCCAGGGCAGGAGACAGCCAGGCAAGGCTGGAAATCACTGACGCGcagggctggatggagccatgggcactcattagacccattgctctaactgtggaagacaggagaaaccaaggtccagaggataaagagcctgcccaaggtcGTGGTCTGTGGCCTCTGACCTCACCCCATATATCCAGTGGCCCCACTTTGGGCCCATGTGTTGAACATGTCTGTATTTGTGCAActtaccagatggctccgtggtaaaggatctgcctgcaatgcaggagatgcaggttctatcc-ctgagtcgagaagatcccctaaagaaggaaatggcaacccactcaagtattcttgcctggggaatccatggacagaggagcctacaaccgcagagtctgacacgccgtagcaactaaACAAGCACTGTCCTCTAGGGCTGTCAGGCGCTCGCCTCCTCCCCCTGGTGGCCAGCAGTGGTTC------------CTGCCAC--------TCTAGGCAAGAGCCCAGGGTTGGAGAAGCCTCGTTTCCAAGCTGGG-TGCAGCACTCTTTGCGGTTGGGGCTAGGCGGGTAATAAAGA------------TGCTGAAATGTAACAATATTCAGAACAGAAAATAATATTCTTTCCTGCTTATGTTTATTTTGAGGAACCTAAGCATGCTCCAATGTCCCCCTGAACTGTTTTGTCCCATAATAAAAACATTAGTCCAGGCAAGCTTTTTTGGTGCTAAAGTTTCCAGTTTTATTTTGTTCTTTCAGACATATTAATTATAGTTTCTTCTTTCTCCAGCCTATTAGTAATGCTGATTTTATTGTTCCTGTTGAAATTGATGGAACTATACATCAGGTAAGAAATCAAAGCTAAATCTGAGTTTCAGTTAGCATTTTTTTTAGTAATTACATTTTCTATGAACTGTATTTCT-AAATTCCCCTTTCAGTAATCATTTTGTTCCTG----------------------AATCAGTA---------------GGAGGCAGA-------------------------------------------------CTTTAT------------------------------------------TAAAAATTC----AGTGATTTTCTGCCTTTTTTTTTTCACTTGGATGAATTTTATGCTTCGTTTATAAGGGAAGCTATAATCTATTTGTAAATATTAGATGTGGTTGCAGGTTCAAATAGTTCTTTGATTTGATGCAGACTTTTAGAAGTTTCCAT---ATCCCC-------------CACTGGCCTAGCTTGATGGTCTAATTAACTTCGCTATGTAATTGCTTT-AGCTACTCTCCTAGCAGGCAACAGGGAAATGTCACAAGTCACTGACTTTACAGTAGATTCTCAGCAAAGACTGTCAAAGAT--TGCCAGCCACTCCAGACTGACCTTGTCACTCCTGAATCATGTTCTGTTAA------TATTTAGGAAA-GCCCAACCCAAAAGGGAAAGGAGGAAGGGTGTGCATTTTTGGATCAGCAGGAAGCTTTGAATAAAGATGCCCTAGTCAGTTGGCATGCATCTTTGTTCCAATATTTTA--TTTCCCCTTATA------------------------------------TTCCTTTTTATTG------------CATGAAGCTCCTCTAGGAATAGTTTCACTTATGAA-ATATTGGAAACACTATGGGAAGACAT--------------------TGTAGGTTTTCCACA------------GAAATGCCCCAGTC-ATCTTCTTTGTCAACCCCAAGATCT-AAAGGGAGAGCCTGTGGCCTGGTGTGTTTATATCCCAGGA--GGAAAACTCACCCTTGGTGCTTGAGTCATAACAGGGTCAAGGGTCTTTCCTTGGAGATGTCGGTA-GTCTCTTTGGCCCTTGAATGCagggtgtcagagctggtggggccttgggagtcaacgggtccagctacctcactgtccacatgggggaagtgaggctcagccagggagagggttggatcaaggtcatacaataggacga--gttaaaatgagagctccagtctcctgttcctgacacagggctctttGCCGGGTACTCAAGTCCCTCCCTCCCCCCCTGCCAGGAGGTCCTGCCAGCAGCCTGTCCCTGGTGCTTCCACACTTCATGCTTTGGAAAGCCATCAGGGAGCCAGAATGGCAGGCACTTGGGCATTTAACATTTGCCGAAGCATCCACAGAATTAACTCTGCATCTGAGAAGCAGTTAAGGCTTCCACGTTTATTATCTTGGCTCGTGT-GACAAGATAATGGGATGA-----AGGAGAAGCTGTCCACTGGCATGACAGAAATTAGGAGAGAAATGAATCCCTTCATTCCTCATGACTGTGAGCATGGCC----CTCAGGACCTGACTTGCTGTGGCCAGCCCATTCTCAAAGAAGCTGCCCAGCTCCTCCAGCCCTCCAGACTGTGCTATGATTCACCTGGTGGTAGACACTCC-------AGAGCTGGGATCAAAAACTCATTCTCCTGAGGGAATGAAGCCACAGGCGCCCAGAGGAGGACCAAGGCCCTGGCGAAGGCCGTGGCCTCGTTCAAGTAATCCAGGATAGGCTGTGCAGGTCCCAAGGGGCCTATTCTCGGTTACTTGCACGCGGACGCGGGCCTGGACGCCAGCCTCTGGGCCCAGGACCCTCCTCTCTGTCAGAGGCACCAACGCCATAG--TCCCCAGACCATTCTCCTGCCCTTTGCATGTAGCAACACTTGCTTTCCAAGCAG-CATCCCGAAGGAGACTGCGGATCACAGGCCGCACCCATTCCTTGCACCTAGCAGCC-------TCCTGAGCAGAGGGTAGG-CCTGGAGCTACTGCAGCCACA---CCCTACCCACAGGCCTCTCCA---------CTCCGCAG---------AGCACCCATCCTGGCCATCC--TGCTCTTCTGGCCCCTCCCTCCACAT-----------------------GCCCTTTCCC----TCAGCCACAAGCTTCCCACCAAGACCTCCACCTGTGTAAACTCCTCTGTC-------------AGCAGCTCTTC-------------------------------CTCTGTATGGAGCAGAACCCCGT-TCCCCTCTGCCCCTCCTCCTGTAGGGTTTCCAGCCTGCTCCATCTGCCGTTCACAACCC--ATGCATACTCACCTCGACCTGCCTTTTAcactacatcttcagccttttctatcc---ccatctccccctcttttatctctgcctctgaagggctggtcagcagagctctggccattctccaatac---cccaagtgttttcagg---caaggtctcatgctcaaactaatttctctgcctggaagctcacttctc-atccttatcagcctggtgaactcctattcatccttcaaggtccaggccaaatgttcccttttgtgattccctccccttgagagggaagtttatcatcactaatttatccttatgctgc-agctttcattatgcatgtttattttgatctgtttttctgaatgtctgctctagactgtgagctcttcaagggcaaggcc a score=29512 s mm7.chr9_random 3803490 1557 + 9745104 CCAATTCAGCCT-----TGTAGCT-GAACTGA--------GCACAGCGCTGAGACCTGGTAATTATGTTTTATTTTAAAGATGTAGCTAACTTCTAGTGGAATTTACTCAAGTTTTAATTGGTCCCTCCCTCTGCCCA---------CTGCCTCTCCCTGGCTTTGCTTTCTCT-----CTTCCA-GTTCCTACACATTCCTTTA-GCCTCCAG--------AGACTGCAGCC-------------TGG--------------GTGTTAGGTGAAACCAGCTGCTTCGCAGGCCTGTCTGGTCTGATCAGAAGGATACACAGAGCCCAACTGTGGGAAGCAGCCCCTTACCCATGTGAAGTGCTTTCTGTACCCCTACACAAGCAGGGTGACCTCCATGGTGTCCACTAGAAAGTTTTCAA--------------------------------------GTGCATTAACCCCAGG-----GGGCAGG---GATGTTC----AGAGTTGGAGGCCGC---AGCTAGTCCTAGACTT------------------------------CCAGAAGGACAGCACCTAGGCTGTGGCCTGTGGCCACATAGGGGCTGACTC--AGCAAGTGCCAAGTGGATGCATGAGCAACTGCGACT-----------GGACATGGCACAGCTGTGCTCTGCTTACTGGCTCCGAAGATACTCAAGAACCTTGACGACGTGGTCGGCTTTCCTTTCTCT-----------------CTACAAGGGTTGAGACGCAGAACCTAGTGCAAG---------CTTCAGTAA------ATCGTACATAG---------------GCCTGGCAACAGGAGA-AGGGCCC---------CTTGGCAGTTCTT-----CCAAGGCCCACGCTGTCCC-------------TGGATGCTATGACTGAC--AGCTCTTGTCTCCTCCCACCGCAGGTGTATGTGCTGAAGCGACCTCACGTGGACGAGTTCCTCCAGAGGATGGGGCAGCTCTTTGAGTGTGTGCTCTTTACTGCCAGCTTGGCCAAGGTGCGTCCTTTTCGTCCTGCATCCTGTGTCCTGCATCCTGCGTCCTGTTCCCAGCCGTC--ATCCCAACCTCTCCACCCTCCACCACACCCCCCAAGCTGCCAA-GAGCCCTTTGTTAAGGTGGAGGAAGCTATTTTTACGGTGACAGGTTCCCACCCCAGATGCGATAGATGCAGGCCATGTGCACACTGCTAGGCTGAGAGGTTTCT-GGTTACCATGGTGACTGGGAGCATTTGGAACAAATGCTCCATGAAGTTGCTTTATGCAGCCACCTGAAACCAGTTATCCACAGAC---AAAACCACAAGACCCGTCCATTGTGACTGTGGATGGATGCAGGTGTGGGGGAGTCTCCCTCACGCATTGAAGAGCAGCCAGATTTTAGAGTCCCTGTGTCCCCGTGTTTGATGGC---CACAGGTTTCAGGGAGGAACAAGT-TAAGAGGCAGGTGTCAAGTGTCACTGGCAGGCACAGAATGTTGGGAGTTCTGATAGCCTT-GGGagctgaatggtttctggtaaattcctttacctctggcacattggtttcttcttgtctaattggggataattccatctgcctgttagagttcattaaatgaaatggcccatgtgaacggctcagcacagccccagattcccatcaagcAGACGTTCATTGAGCCCTCACT--GTTCTCTGGGCACTGCCATGGACACTGTCGCAGGGTAAACACTCCTGATGTTCAGTATTTACCATCAT s bosTau2.chr22 39317901 1691 - 48330986 CCACTTCAGGCTGAGGCCAGAGCTGGAACTGAAGGAATATGAGTCGAACTGAATTTTAACAAGTTTGAATTATTTTAGGGAAATGGCTAATTTCAAGTGAAATTTATTCAAGTTTTAATTAGTTCTTCCCTCCTCCCACCTTCTCTGCCTCCTCTCGCCAGCTCTGCCTTCTTTCCCCGCTCCCATGTTTCCTCAGATCTCTTCAGGCTTCCAGCTGGGGGCAGAGCCCAGCCACTCTAGCAAAGGTGGTCCTTTGCCCCGCTGTGCTTGG------CGGCTGCTTCTGATGCCTGATTG--CTGGGGCTAAGAGTAGGCTGGCCTCA-----------CATCCCCTGAAGCATCTG------TTTCTGGA-GCAGACTGAAGCAGAGTTAATGTTGT-GTGTCAAGTAGACGGTTCCCACACCGACAAGGAATCCCTTCACGCAGCCCTACTGCTCCTGTGCGTCCAGCCCAGGCCTTCTGGCAGGAGAAGGGTTCCAATCAAGTAGGCAACCACCGGAGC-AATCCCAGACCTGCTGGGCAGTGGGCCACGCCCCGACCTCCACCAGAAGCACCAC-CCAAGACCACGGCCTCTGTCTAGAAGCGGCCTGACCCAGAGCATGTCCCATG-AAACACATGTGAAATGAAGGCTCTGGGTCACCCGAACGTGGCCCAACCTT--TCCACTCACTGGTTCTGAAAATCCCCAGAAGCCTCCACACCAT-TTCAGCTTCTCTTTCCCCCCTGGGTGGGGAGTCTGCTCCAAACTCTGACCTGGAGTGCACCGTGAGGGGTATCTGGTCCTCAGTGCCATGTTATATTACACAGCCCCTCGTTCAGTCCTCCTGGGGGCAGAAGACAGGAACCAGGAACCAGCTTAGGAATTCTTCCTCCCCAGGGCTCTCGGGGCCCCAGGCCTTCCTCGGCGGTGGCTGTGACTGACCTGCATGCTGTC-CCTGCCGTTGCAGGTGTATGTGCTGAAGCGGCCACACGTGGACGAGTTCCTCCAGAGAATGGGACAGCTGTTTGAATGTGTGCTCTTTACTGCCAGCCTGGCCAAGGTGGGTC--------------------------------GCGCC-----CCCAGCCCTCAGAGCCCAGCCCCTCCAGCC-------CTGCCCCCTGTCTGTCAACCGGCCCTTTGTTAAGGTGGGGGAAGCAGTTTCCATGGTGACAGGTTTCCACCCCAGATGGGGTAGATGCAGGCCATGTGCACAGCACCAGCCTGAAAGGCTTTTGGGTTACCATAGCGAC-AGGAGCACTGGGAACAAACGCTCCATAAAGTTGCTGCGTGCTGCTG-CTGAGGCTGCTTGTCCACAGACCAGGAAACCAC-AGGCGTGTCCCGTGTGACC-------GAGACAGGC--------GTCTGCATCTCAT-CTGGTGACTGGC-------TGAGGCCTCTGTGCACTTG-GCTTAGCAGCTCACCCAGGTTTCAGGGAAGGATAAGCATCAAAGGT-----TCATCCACCCACGGAGGCCTCA------TGAGTGTTCTGACTGCCCTAAAGAGCCCCAGgacctcaggccagtcacttcacttccctcgcctcagtttcttct--atgagatagggatgatcccatctacttcgtggggtggatcaaatgaaataatgccgagaaggagcttagcacagggcccgactcctattcagcAAGGGCCTGCGGAGCCCCTGCTGAGTCTCCCATGTGCTGTGCTGGGCACTGTCACACGGTCACTGCTCTTGGTATTCATTCTTTATTATAAT a score=15895 s mm7.chr9_random 3805135 694 + 9745104 CCGACCGTGACTCTCGCAGAGTCAGT-CAATCCACTTAGCAGAGGCACCTGG---GTCTTCATGGGTACCTGGAAAACTCTGAGTGGCCCCAGAGATGAGATCTGTGGTGTGCAG---------------------------AATTCCGGGAGCCACTAGCAGCTCCCTCCCCCACGGCCTGCCTGGGATA-GCACCCATCCTCATCTGCCTGTTGGA---------TCTTCGACCCCAGGTCTTCAGCCCCACTCTGCTGGCTGGGGCATTCCTGGCTGGGTCTATACTCTATGCTGACCAAGGCAAGAGCCACACATTCTGCTCCACCAGCGTCGTCAGCCAGCCTCAATG--GGAGCTGCTAACGAGTG-ATCCCGAGCCTGGGTTTTGATCTCATGTACACAAAGCAGAACACGGCCTCAAGGAAAACATAGTCGTCCCCAGTGG-----TGTCAAGACTAATTGCGTGAGCAGCTTCAGTGGTG---------CTCGTGACGCCGCTCCGGGATGCTGAGGAACCTGAAGTAATAAGCAGCCAAATAGCGAGCGAGCGGGAAGATTGCACCCGAGCGCCGGACTGAGGCTTGGTTTTTGTGGtttttttttttttttttttttttCCTTAGCAAGATTGAAA--ACTCTTCCTAGGCAGGGTCCCCAGTGTTCACTTAAACATCCTTGTCTGGGCCGCTCTTCCTGGGCTGTTCCCACCTGCCCCACCATCTGTTTCTCTAGCCCTGCT s bosTau2.chr22 39319850 694 - 48330986 CCAACCCTGGCCCTGACAGGGCCAATGCCATCCATTTGTTGGTGGCACCAAGAGTGTCTCCATGGGCACCTCAGGGAACCTCAGTGAGCCCAG-GATGAGCTCTGCAGAGTCCAGGTTAGACGTCTGCCTGTCTGCAGACCTGCTCCAAGGACACACAGGCAGCTTCCTCCCCCGTGTTCCATCT---CTATGCAGGCTCCCTCCTCTGAATGTTGGGGACTCTTACCCTGAGTTCCCAGATGTGCTGTGCTGCTTTGCTGGGCTGGGCATTTCTGGTTTTGGCCAT-CTCTCTGC--------------------CATTCTG-----CCAGGCTCATCACCAGGCCATAAAGCTTGAGCCAGTGGGGAGGGAATCAAGAGCCCCAGGCTGTCTTCTTTATGCTGAAAATAGAATGCGGCCTCAGGAAGAACATCATCTTCCCCAGTGGGTACCCTTTCGGATGAATGGTACCCACGACTGCTGTGGTGCCGATGGCTCTTCTGACAGTGCTCTCGGCCGCTGAGGCGCCTGAAGTGATAA----CCAAAGAAATAACAAACAGGAAGGTTGCACTGTGCTGGGGGATTGAGAGCTG-------------------------TTTTTTTCTTTTGGCAAAATTGAAAGCACTCTTTCTTGGCATCATCCCCAGCACTTGCTTAAACATCCTTGT-TCGGTCTCTCTTCCTGGACGGCTCCCACCTGCCCCTCCATCTGTCTCTCCAGCCCTTCT a score=2796 s mm7.chr9_random 3806629 137 + 9745104 TGCATTCTACTGTGGCCTTCGTGAC----TCAGCCTCCG----TGTCCGCTCCCTCCCTGAAGGGGTTGCCAGCCC-TGGGGCTTCCTGGCTGTGTGCCTCGCTCTGACCTCACTGCTGAGTTCAAACCTCAAGTGAAGCCTGCAG s bosTau2.chr22 39321279 142 - 48330986 TGTGTTCCACTG--GCCTTCCCAACACCACCAGCCTCGGGTGCTTCCCACTCTTCTCCAGCAGAGCCTCTGGGCCCCTAAGGACCTCTGACTGTGCCCCTCACTTGGGTCTTGGTGCTGAGGCCTGGCCTTACGTG--GCCTGGAG a score=20163 s mm7.chr9_random 3807986 513 + 9745104 CAGGAGGTCCCAG-TCTCGGGCCCCTCCAGGTGCCTCGCCTTCACCGAGACTCTGTCTTTCTAGTATGCAGACCCTGTTGCCGACCTCCTGGACCGCTGGGGTGTGTTCCGGGCCCGACTCTTCAGAGAATCCTGCGTGTTCCACCGTGGGAACTATGTGAAGGACTTGAGTCGCCTGGGACGGGAGCTGAGCAAAGTGATCATCGTGGACAATTCTCCTGCCTCCTACATCTTCCATCCTGAGAATGCAGTAAGTCATCCCAGG--GGAGGAGCTAGAGGCTCTGTCTGAGCTGCAGCCTAAATGCCAGTTCTGAAACATGGGCTCAGGCGCACTCTGGGCTTGGCTTCTTTTTTTTTTTTTTT-------Ttccagatcttgattcagccacttagtgacaacatgactgt-------------ttaacctccct-----------cttcatccacaagtaag-atgacagggacactgctctctcctgagagtgttggaggactcagtgcttagacccgtgctcaggcctggcaagtgctcagca s bosTau2.chr22 39322704 525 - 48330986 CAGGAGGTCAGGGCTCCTGAGCTCTTCCAGGCCCCCAGCCTTCACCATGACACCCGCTTCCCAGTACGCAGACCCTGTGGCCGACCTGCTGGACCGCTGGGGTGTGTTCCGGGCCCGGCTCTTCCGGGAATCGTGTGTTTTCCATCGTGGGAACTATGTGAAAGACCTGAGTCGCCTTGGGCGGGAGCTGAGCAAAGTGATCATCGTGGACAATTCTCCTGCCTCCTACATCTTCCATCCTGAGAATGCAGTAAGTAGCCCCAGACCAAAGGGACTCAGGGCTCCAGCTAAGCT---CTCT---TGCCACTTCTGTACC-----TTCAAGCAC---CTGTGCAGGGGTTTCGTGGCCCTTTCCTTAGTGAaatcccagctttgcattgagcagttacatgaca--ttgactgttatttatgctcactgagcctctctgccaaagttgccctctctgtcaaatgggcattctaggcatgctgat---tcatgggattgttggaggatcaagtgt----ggcagtgcttgtGTTGGGTAAGTGCTCAGTG a score=5547 s mm7.chr9_random 3808528 394 + 9745104 TCAGTCCTCAATGTCACAGAGCTGCCCAGATCCGTATGACCTCT-CAGACTCAA-------GGGTAACC-CCTCAACAGAAGTGTATCTTCCACAAGAATGAATAAAGTGATTCAGAAATGGCTTGCCATCGGACCATCA-GCTCTGCCACCTCAGAAAGATGCCATAGAAGCCCAGTCAA---GAAGGCTCCCAACATACAGCTCCCTGGAGCATAGCCACCCTTGGTGCCTGCTCACCAGG-ATGGCATGGCTCTTAGATCAGGGGTTGGTGCCCT-CTGCTTCATACTGGGCTCTTCCAGGAAGAAGAGATCAGCC---------------------------AGGATCACCACACCAAGC--CAGATCATGCCCTGAAACACACATGCTTCTTGGGCTCA----CCCAAGCCTGCAATGAAA------ACACTAtcttcctcct s bosTau2.chr22 39323279 433 - 48330986 CCGGCCTCCTGGATCTGGCTATTGCCCAGGACTTCGTGACCCCTGTAAATTCAGAAGGTCTGGGTGACCTCTTCAACAGAAGTAT--------TAAGAATGAATAAAACACTTTAGTGAGGTTTTCAAATGAGACTACCAGGCTTTACCACCTCCTAATGATGTTTAAAAAG--TAGACAATGGGAACATTTCCTACATAAAACTCCCCGGAGCGTGGCAGCTCCCAGTGCCAAGTCTCTGGGTGCAGCACA--TCTCAGAACAGGAG-AGGCGCCCTCCTGCCGCTGGCCCTTCATTTCCAGGAGGCA-AGGTCAGCCCTACTGGAGACTGCTCACCCTTCCACAGTGGCCGCCACACCAGACTTCAGCTCAGGCCCTGGAGAGGATGCTTCTCCCAAGCCCAGGCTTCCCAGTCT-CAATGAAAGCCCATACAGCATCTTTTCCTT a score=2645 s mm7.chr9_random 3810728 356 + 9745104 cctctcatttctttttgaatctcttctctGAGCTCTTAGCTCCTCTCCACTACTGCCTCTCCCT---CCTCTACCTAAAGCTAATGGGAAACCT---------TGGC-----ATCTCC---------ATGTTTACCTTGTTA--------CTGCTAAGCTTGGGCAGGAAGTCTCTCCTTCTCTCTACACAGAGCTCAGAGCAATAGCCTTAAGTAGAGGCCTGGTGTACCTGGAGGGCGCTGTGGTTGGTGGTTGGTGGTTGGCAGGCAACCTCAGAGAGGCATCTGGGGCTCTGATGGGCAGTGGGCCAATTCAGTGCAGTAAAAAGAGCTTT-----------GGAAACAAGCAGG------------------------------------GAGGGAA------------------------------------------TGGCTATCTCTTCTGCAGCAAGAAAGCTAAAGGGG s bosTau2.chr22 39325950 457 - 48330986 CCCCGAATTTGTTTTTATGTCTCTTCTTTGCACCTCTTGCTACCACCTTCTAGCAGCCCTCCCCACCTCTCTATCTAAAACTGAAGTAGACTCTCTTTTTCTGTGGCTCAGAATGTCCTGAGATGTTATACTTGCCCTTTTAACTGAACTCTGCGAAGCATGGGAGGCAATAATCCACATCTCCATGCT---------GTGCAGTGACACTAAGTAGAAGCC--------CTCGGCTACTCTCTTCAAAGATGTCAGTGGCTGATCGGTGACCTCTGA----CTGCAAGTGCTCTGAGGTGCAAGGAGT-GGTTTGATGCAATAGAAAGAGTGTTTGatggacagaggaacctggcaggctacagtccatagggtcgcaaagagtcgggaagactgaagcaacttagtatgcacacaCGCAAGGTAGTTATATATTCTGCGTTCTGGCTACCTTTTATGCAGCAGGAAAACAAAACAGG a score=139270 s mm7.chr9_random 3811183 3813 + 9745104 CCGCTGCGTCCT-CATGCTGTGTCTTGCAGGTGCCCGTGCAGTCCTGGTTTGACGACATGACAGACACGGAGCTGTTGGACCTCATCCCGTTCTTCGAGGGCCTGAGCAGGGAAGACGATGTCTACAGCATGCTGCACAGACTCTGTAGCAGGTAGCCCTGGCCTTGGCCCATCT-GTGCCTGTGCACTCTGGAACCCTGGCTCAGGGGACCCGCCCGGCCTCGGCTCACT---GAGTGCAGCCCAGGAAGACTCCGTGCTCCGGGCCACAGGGTGAATGTCACCATGCCTACCTGGTTTGTTTTGTTTTGTTTTTTTAAAGAACAGAAACAACTATTTTAAAGGAAAAAAAAAAACTCTTTTAATAGATTTCATAAACGGAC-TGCATTTTACAAGATTCGATTTTCTTAAAAACATACCAaaaagaaaaagaaaaaaaaagaagaagaaaagaaaagcaaaAACTTTGATATCT-CCCGACTTCCTTT--CAACTGACCTCCCCTTCCAAGCAGACAAACCTGTCCTCTT-GGTCCCGGTTTGGAGCAGCTGACCCAACTCAGAATCTCTTTCCTACAGGATGAAGTGCCTTTTTGAATGTTATTTTAAGCTGAAAGTTAATTTTTTTGTATACAGCCTATTTCCAAACATCTTTTAGTCTTTTACGGTCTTAGATACTTACTCTGAGAAGACGAACAGGACAATTTTATAGACCCCGGTAGCCTGTGTGTGGTGGGGTAAGGATGTGGTCGGGGAGAGCAACGGGTCACAGGAGCCCGCCTCCCAACATGAGTGACTG------TCAACCGTGGCGTGCATGGGATCTCGCTCCCCCTGACATGACTTTTCTCCTGACTGTCCTTGTG-------TCGTTTCCGA-CCAGGCTGGAATGTACCTGCCA----ATGGCCCAATGCTTTATGAAACAGCCGGTTCCTTTTATG--------ATGGTTTCTGAGGTTGTTAAAAATGTGTCTTGAGGTTGCATTTTTGCCCTTGGGAAGTGACATTGTATCGTCACATGTGCTTTCCCATGACT-CCACGTGTCTGTCCCTTGTTGTT-------CTGTTGTCGTTGGTTTGAGGAGAGCAGTTAGAGAAAGCCCTGAAGCCCTTGGA------------------------------TCTATTAAGTCCTTCC-TTTCAGAAGCTGGGTGCACATGGAGCTCGCTGTTCGGA------CTCCGCTGCTACTGCGCTCCTGACACCAAATGGAACTGACCAGCGGCTGTCACACTGTTCCTTAGCCACTGTGCCTATGCTTAGAAGATGCTCACCGCTCAGCTGCAGACTCAGACAGGGTCACAGAC--AGGTGTCCCACCCCATCAAGCACGGCA--------CCCTTCTTTGGCCCCCAGCCACCGCCAAGAATGCCGAAGGGCACAAAAGTTTGGGGACAAAAACAAAACTGAAGGGCCAAAGCACCGCTCAGGTGCGGCATGGCGTTCACTTTACACTGCAGTCAACATCAGAGCCTAAGCTGGAACTCGCCTGTCTCACCTGAGAACCTGTGGCCTCAACCAGCCGCCATGCTGGTGTGGCTCAAGT-CACCTCTCAG---CCTCTTTGGAAGCACAGCCTCTT--CGAGCCAAGGGTTGGAGAAGCCTGCCTTGATGGGAGACTCATCTCTCCAAACCAGGGA---GAAGGGCTTCTCCCTGGAGCCTGGGGGTCTCTTCCCACCCGTTCCCAGTTTGGTGT-TTAATCTGTGTTACATCGACCCTC-----------------------TGAAG-----------------AACGAACAGAGCCCTTTTGTGTTGGCACCAATGCCTTAGTCCTCTGTGGGTTGGGCCTCAGCCAGAATTCTGCTGGGAGTTGCTGGCGTTGACAAGATTTAAAGTCA-----------GGGGTCAAACttttaaaaatatatatattatttttCTTTCCTTCACAAAATAACGAAGCCAGCTACTAGGCCTGTCTTCCC-ACAGTGCTTGGTCCGGGGAACCACTGTGCAGTCAGAACGGAGACACG---TCAGTGTCGTTTAGATCACCTGA----CTGAGTGTTCCGAACCCAGCGAGCCCCGTGCCAATTAAAACCGAGACTGCCCCTTTGCTAAGAAATCATTTCCACAGGTAACGACAGTTACGCGGCAGATCCGCACACGCCATCAACCCTCAT--GGAAAACCAGTCATTA---------GCTGCCTTAAGTGTCTTGGGTGTTTC-----AGAGTCTGCCATGTGTTGACTTCCACACAGAACAAGGCCCGGATG-GAACCTCAGA-TCTTTGCCTGTGCCTCTT--TGTGTCGGTGTCACGGGGCCTTATTTGAAAAGGGGGGCAGAATGGACTGCGATTCCAGAATATTTCAGGGGAAGCGAGCGTAGAAATAGTGCTCTGCTTCAGA------------------CAGGTTCGAGGCCAACCCTTGGCCTTA-CAGCCCCGGGGCTGCGTGTGCCCATGCCCT----CCGGGCAGAGCTTCCAGGTG-GGAGCCCCGTTCTTGCCACCACAAACATGGAATGTCTTGGGTGGGTGGCAGAGCTTCTGAGG-GCTCTGAAATC--TGCACCTTATCTGACCAAGCTCCAATAATGCCAATTTTTATTTCCTTTTTTTTTTTTTGAAAACAAATCCGCTTTATGTACATAATTGAAA----------AAAATCTATATTTTTAATCAGTTACGTGTAAATGAAGCAATAGAACTCTAAC--AAGGCCAAGAAAGGAGACGAATGTTCGAGGTTTATTTTCTTAAGGTAAATACGGGTATTGCTTTTAATTGTAA--GTTTATTAAAATGCGGGCTTGAGAACGT-ATCAGCCATTTCTCTGTGCCATATCCTTCCCACGTTACCAAAACA-CTCCATCTCTTTAGCCAAAAGAAACCCCTGACCTCTCAAG-TCCCGTGGTCCTCTCAGCTCCGGGTTAGGACC-CCTCTCTTAGACAAGCGCTTTCGATGCGAGGGTCTAGGACAGGGTGGCTTGGGTTGGTGGACTCCAGCCTACACCTTTAGCTTGACCTCAAGTGG-GGCTTcctgacccctgacccctgacccctgaGGATGTTAATGTTCTTGTCTTCCATTTGTTCTGGAATCCTCCATGTCGGTCTGTGGTCCCCTGCACTAGCTGTTTGTAAACAATACGTTTGTATCTTAA----TCACACCACCTGTC---ACCGATGGCAGTGGGTGAAGATCCTGCTGACACGGTGCGATGTTG-TGAGGTGACTTTGGGGACATGAGGACGTCCACATGACACTAAATCATCCCGGTCACAGCATGTGAAGTTGGGGGTACGGAGATGAATCCTAAAAGTGTGTAGAGCCTGGCAGCATTTTACAACCCTGTATTTCAAAGACGGCTTTCTAATAAAATCCAGAAACACACAGCCCTATTGGTCAAACACTCGTGACGTTTGTGCCTCTGCTCCTCACGGTGCTGTGCTGGACAGCTGGCATGCCAGGGTTTGAGAAGAGCGGATGGCCTACCGTGCTCGCGGTTCCCTGGGCA-AACTTGCTGGCTGCCTCTGTTCCTATTTTACTGTAAATCTGACCATGTCTATCCCTGGAGTCGCCCTGAGGATAGGTTCC----------CCCCAGGGGTGGTGATGTTGGTGTCTGGGGAGTTACAGTTTTCTGCTGGATGTTTGAATGTGCCGTCCCAGTGCCACTTGGGAAATACCACATGTTGGGATGTGCACGATGCTCGGGGCAAGTATTGTCAAT-----------CAGTGATTTCCCTCCTGCCAAAAATAAACTCGTCAAACTGCACTGTCTCGTGGTTGATCTGCTCTCCGGAGGTTTGGCCTCTCCTCCCTGTCTT--------TTTCCCCCCTGCATACCTTCCTGCTGACACCTTGGGCCCTGATGGCCTCCACTTTTACAGAGTAGGGT-------GAGCAG---AGCCGAGGGACCGCGTGCCAGAGTCCTTGACTCCCCAGAAAGCTAGAAAACCACCCAACCCA s bosTau2.chr22 39326585 3875 - 48330986 CTGCTGCCCACTGCACGCACTGTCTTCCAGGTGCCTGTGCAGTCCTGGTTCGACGACATGACGGACACGGAACTGCTGGACCTCATCCCCTTCTTCGAGGGCCTGAGCCAGGAGGACGACGTGTACAGCATGCTGCATAGACTCTGCAGTAGGTAGCCCCGGCCTCCGCCCGCCTCCTGCCTGCGCACCCTGGAACCTCAGC-CTCGGGACCCGCCTGGCCTCCGCTCCCCCGGGAGCTGAGAGTGAGGACACGCCGTGCTCCAGGCCACGGGGCGAATGTGGCCATACCTACCTGATT------------TCTTTTTTAAGAACAGAAACAACTATTTT--------AAAATGAACTCTTTTAATGAATTTCATAAAGGGACATGCATTTTACTGGATTTGCTTTTCTT-AAAACATACCAAAAAG-------GAAAAAAATGGGAAAAAAAAAAAAGC-------TTGGTATCTATCAGACTTCCTTTTACAACTGTCCTCCCC-TCCAAGCAGAC-AGCCTGTCCCCTTCTACCCCAGCTCAGAGGAGCTGACCCAACTCAGAATCT-TTTCCTACAGGATGAAGTGCCTTTTTGAATGTTATTTTAAGCTGAGAGTTAATTTTTC--TATGCGACATATTTCCAGACATCTTTTAGTCTTTTATTGTCTTAGA----TTCTCTAAGAAGATGAATATGACAATTTTCTAAAACCTGGGAG-----GTGGGAGGGGGGCGG---GTGGCAGGGGATGG-GGTGAGTCACAGGAGCCTGTCTCCCAACAGGCGCG-CTGCCCTGACCACCTGTGGCATGCCTCAGGGCCAGGCTCCCACAAGGAGA----TCCTGTGACTGTATCAGTGTGTTTCTTCATTTCTGACCCAGTTTGGAATGTATCCACAATCGTGTGGCTCAACGCTTTAGGCAAT-GATAGATCCTTTTGTATTCTCCGTATTATTTCTGATG--GTGACAGATTTGTCTTGAGGTCACATTTTTCCCCTTGAAAAGTGGCATCAT---GTCACTTCTGCTTCCACACGACTGCCATACTTCTGTATGTTTTTGGTTTGGTTATTGTTGTCGTTGG---GGGTAGAGCAGTTACAGAAAACTCTAAAACCCTTGGATAGTTAAAAAAGGAATTCTGTTCATTGGTTTATTTTAAATCTGTCCTTTTCAAAAGCTGGATACCCATGGA----GCTGTTCGGGAATTTTCTTTGCTGCTACCGCG---CTGCCACCAAATGGAATTGACCAGCGGCTGTTACACTGTTCTTT-GCCACTGTGCCTACGCTCAGAATCTGCTCACTGCTAAGCTGCAGACTTGGACAGGGTCAGAAACCTAGGTGTCCCACCCCACTGAGGACTGCGGACTTCGTTCCTTCTCTGGTGC----CCACCGCACAG-GTTCAGAAGGGAACA-------------------AAGACCAAAGGGCCGGCGCACCTTATCGGTG-----TGGCGTCCTTTTCAAACTGCAGGCAGCCTCAGAGCTTGTGCT-AAGCTGAGTGTTCTCTCAGGAGAACCTGTGGCCTCAAGCCGCCACCACGCTGATGCAGCCCAAGTCCATTTCTTGGGCTTCTCTTTTGAAGCACAGCCTGTTTCTGAGCTGAGGGTGGGGGAGACGCATCTGGATGTGGGACCCATTACCCAGAGCCAGGGAAAGAAAGGGCCCCCTCCCTGAG-CTGGGGCTCCTTTTGCAGCCTTTTCCAGTGAGATCTCTTAAGCAGTGCCA---TGATCCTCGTTTGATAGTAAGATGGTCTATATAAAGTATTGCTCTTAAAGATAATTAAAAAGAACCCTTTCATGCTGGCACCGTTGCCTTAGTCCTCTATGGGTCAG------GCTGGAGTTCTGGTGGGAGCCACTGGCACCATGAAGATTGGAAAACAGTCGGGGTGGGGGGGGGGGCGGTGTCAAAGTAAAATTTCTTTTCTGCTTTCATTCACAAAATAGTGAAGCCAGCTGCCAATCACATCCTCCCAACAGCACTTTGGTCTGCGGACTGCCGTGCTTTCAGGAGAGAAGTAAGTATTTAGGGGAAACCAGGTCTCCCCACACTCTGAGCGTT------CCAGTCATCCACACGCCAGTTAACACAGAAACAGCCCC-TTGCTCAG----TGTGACCACAGAAAATGACAGTTATATGGCAGGTCTGCACATGCCATACACCTTGATTCAGAAAACTAGTCATTAAATGAACCCACTGCCTTAAATGTCTTGAATGTTGCAGTCAAGTGTCTGTCACGTGTTGACATCCACCCAGAAGTCGGTCCTGATGAGAGCCTTAGGCCCCTCACCTGTGCTCCCTGCTTTGTTGGCATCGCATGGTCTTACTTGGACTAGCGGGCAGCGAGGA----AATTGTAGAATATTACAGGGGCATCAAACCTAGGAATCGTGCCCCACTTCTGATGGAGTGAAGACACTTGGCAGGCTTGAGCCAGATCCTTCACCTGGTCATTCCCGAGGCCGTGAGTGCCACAGCACTGGGCCAGTGCAGAGCTGGCGGGGGTGGAGCCCAGTTCCTGCCAGCACAGACACAGAATGTCTCAGGAGGGCAGCAGGCCCTCCGGGGAGTTCTGGATTCTGTGCACCTTATTCGACCCCACTCCAA-AATTCCG--------TTCTTATTTTAACCCTTG------ATTCTGCTTTATGTATATAATCAAAATATCTATATTGATATATATATTTTTAATCATCTACATGTAAATGAAGCAATAGAATTCTAACATAAGGCCAAGAAATGAGATGAATGTTTGGGGTTTATGTTTTTAAGGTAAATACGGGTATTGTTTTTACTTATTACCTTTTATGAGATTGTGGGCTTTAAAACCTAAGGAAACCTATCTCTGTGCCATATACTTCCCATGTTACCAAAACACCCCCAACTCTTTAGCCAAATGAAAAATCTGACCTCCTGAGTTTCCATGGTCCTTTTGGTACCAGGTTAAAATAGAGTCTCCTGGACAATTATTTTTCACTTTAATATCTGGAACAGGATACCATGGGTC-ATGGACTC-------------TGGCTGGGCCTCGAGTGGAGGCGCCCAGGC------------ACAGTGGAGGTGGTTACTGCTC-TGTCTTCCA-TTGCTCTGGAATCCCACATGTTGGTCCATGGTCTCACTCATTAGC----TGTAAGCAATGCATCTGTATCCTAAAAAGAAACACCACCCGTCGTAGCTGACGGCTGGTGGGGAAGCTCCT-CTGACGTGGTGCCATCTTGCTGAGATGATCTTGGAGACAGGAGGATGCCATAGTGACACTGACTTGTCATGGTTGCAGCGTGTGAACGCATGGG-ATGAAAAGGAAGTCTGTAA--GTCTAGAACCTGGCAACATTCTACAGCCCTGTGCATTCAAGATGGCTTTCTCATGAAACCCAGAACCACGCAGCCCTA-TGGTCAAACACTAGTGATGTTTGTGCCTCTGCCTTTAAAGGTGCTGTGATGGACGGCTGGCCCGCCAGGGTTCGAGAAGAATGGATGGTTTGAAGTGCTTGCCTTTACCTGTGCACAGTCCACTGGCTGCCTCTGTTCCTATTTTACTGTAAATCTGATGGTGTCTGCTGCTG--TTCATTCTCCAGAGAGCTTCTAACACCCCTGCTCAAGGGGTGGAGATGCTGGTGTCTGGGTAGTCATGGATTTCTGTTGGACATTTGAATGTGATA----AACATCACTGGGGAAATACTACATG-TGGAATGTGCACGTTTCCAGGGGCGAGCGTTGTCAGTGAAGAGGTTTGCAATGATTTCCTTCCTGCCAAAAATAAATACGTGAAACCGCACTCTCCTGTGGGTGGACTGCTTCTTAGA------GCCTCTCCTCACTGTGTTATCTGTTCTCTCCCAGCTGCACAGCCTCACACCAGCTCCTTGGGTC---------------TCTGAAGAGCAGGGGCCAATGAGAGCAGGACAGCCAAGATCTCAAGAGCTGTGGACCTTGACT-CCAAGGGAGCTAGATAACCACTCTGCCCA a score=14501 s mm7.chr9_random 3822088 1283 + 9745104 AGGGCAG-TATGCAGGAAGCAATGTGACTACCCAGTCCAGGGAGA-AGACCATGTTT-----AGGTGGGGGGTCGGGGGATGAGAGAGGGGAAGAGGC--TGG-GAAACCAGGGGTCTTTCACCCTTGGGCCTGGAACTTGCAAGTAAAGTGGACAATGGAGAGGGACTGAGGTCTGGGCTGTGTACACGCTGACCCTTAGAGACCCCAGAAGAGACAG----------------ATGGAGAGAGAA-------------------------GAAGGGG-----------------------------------AAGGTGTTACCGGAACCAGCC-----------AACACTGGCCACACAGAAGTGAGA---GTCCAGCAGATTGGGAA--------------------------AGGGGAAAGGGGATGGTGA---------------------------CACGGGACATGGGGA--CAGGGGACAGGTG-----------------------------------ACTGAG--AGCACAGA--------------GGAAGCCCAA-----CACTCTCTACT------GTGAGCCAGACACAGG-ACTAGCCAAGTTCCTCGTGACACAGGCTTCC-TTTACACACAGCTAACCCACAACCGTGTCTCTTGCATATGTCCATCTGTCTatcccaaccctcaggaggctgaggcaggaggactgtgagtttcaggacagcttgggctatacagtatgacactgtctgaccaaaacaaaGCAAAATAAAACACATACACACACTGACCACTGGGCACAGGCTGGCCCAGAGTTTCTGGAGT-GTCTAGTCCTGAGCCATGAGACTTTGTAAGTGAAGAATCCGCTGCA----GAGAGAGG-TCTTGCATACTGTCTGCAGGCAGGATCTAGTGGGGTT---------GAAGGGAAGGCATGTGCTGGCTGACGCTGGCTGTGACTGAGATCTGTGCTGTGACAGGCAGGAGGTAAAGGAAAGTTGTGTCCCAGGCATTTCTGGAAGGTTCTATTTCCAGCGTC-CTCCTATCCCACAATCAGGAGTAACAG--AGGGGCAGCCAGGGTGTGGAAGGGATCTCCTTGCTGTAGACTCCACCGGCCTCTCCCACGATGGATATCAGG-CTCCCTGGGGACCTCTGTGCTGGGCAGCCAGCCCGAGATGGGAGGTCGGGGTCAG--AAATTCTGGGAGGCAGCCCCGGGCGT-TTCCTCCACCTCCTAAAATGACCTTCATATCAC------------TTGACTCACTATG------GTGGTCTGAACCT---------CTAGA---TCCAAAAGGAGCCCAACCCGC-GGGGGTAGGGGGGCGGTTGCCCACTTGAGCTCCCCAATGAGAAATCG--GTGTATTCCACAGTCCAC--CTCAGCCTTGATCAGGCCTCCACCCCTAGCCTTCTCTGCCCACTGGTACCGAAGAAGTAATCTACCAGGCCACGGGAAGGGGGCTGGCTCC---CAGACGGCTTGGTCAATATTTATTGACTGACTAA s bosTau2.chr22 39334099 1366 - 48330986 aaggcagacatgccagaagaaacgtgac----cagatgaaggagatggatggaggctgagggaggttgggaatagtgggagtcggggtcagaagggacactggcgtttccatggtgtttaaagcctggggactggaacttgggaagaaactagaaagatgacaagagcggaggcctgagctctgcgcctgctgacactgaaaggccccaaaggagactgtggagcagccagtgcagtggggaaaaaacttgggctgggggctgattcaaggggaaggggtggtcagcaagtctctggctgtagcgggcggtggtaaggtgaagacggagtcaacccccagctttcggactctggc-acctaggaaagaaacatttccagggaatgaggaacaaagaccaaccagaatgagcagagaagttgagatgagatggggagaagtgagtGCACAGCATTTCGCTGGACACCGGACAAAAGGAGCCAGGAAACAGGTGCTCAGGTAGGCAGAGCCACACTCACACAGGCATGCACTGTGCAGGCACAGGTCCCAGAAGGGAACGGAGGCTCAAAAAGGCATTCTCCCACACACAGGTCAGACACACACAGGTACTGGCCAAGTGCCCTGTGACACAGGCCTCCATTCATACACAGGGGCCCAGTAAC-----------------TCTATCTGT-----------------------------------------------------------TAAACAGTCACGCACTGGC----------------------AGTACGTCCTCCCA----------GGCACAGTTGGACCTAGATTTCCTGGAGTTGCCTCAACTTGTGACAGGGAGCAGTGGCAGTGAG-----CGCTGAATGTGGAGAAAGGGTCTTGGGGTCAGT-----GGCAGCTTTCAGCAGTGTTTCTGCATTGGAAGGGGAGTC-CACACTGGCTGCACGTGGCTGGGACTGAGGCC------------------------------ATGGTGACCCTGGAGTTTCTGGAAGGCTCTATTTCCAGCTCCTCCCCCATCCCACAATCAGGAAGGAAAGGAAGGGGCAGCCCTAGC----AAGGG----------------CTGGACTGGCCTCTCCCACGATGGGTATCAGGGCTCCCTGGGGAAGGCTGTGCCGGGCAGTGAGCCCAACTTAGGCTGTGAAGGATAGTGGAGGTGCAGGAGGGAGCCCTGGCCCCCTTCCTCCACCTTCTGAAGTGGCCTGGGTCTCACAGAGCCAGATTGCCAACCCATCCTGCAATAAATAGCCTTGGTCTTGCTTCCTCCTAAAGTTTCCTGGGGTGGCCTGGCCTCCTGGAGGTCAGGGATCAA----------GGGCTGTCAGAAGGGAAGTCACAGTGGCTTCCACAGCCTACATCTCAGCACAGCCCAGGCCTCCACCCCCTGCTTTCTCTGCCCACCAGTCC---AGCTGT---------GGCCCTGGGGACAGGGCTGGCCCCTCTCAGAGAGCTGGGTCAATATTTGTTGAGTGACTAA a score=22623 s mm7.chr9_random 3826646 1147 + 9745104 CAGAACCTCCCCCGCTTTGCACAGCCTATGTGAATTTACCTGGGTACCTGGGTAGCCAGTCTTTCAG-TTTGTCCCAATGGAGAGTTTCTCATTGGAAGGAG--GTTGTGTTTATCTGGGAACATCCACGTGTCTCTGTAGACCTCATCCCTGTTTGCAGTCTCTACTT--GTCTGTATGCTCC--------TGTTTGCTTGTGGACCTGTGTACAGGGCCCATCCCTACTGACAAAGCCTTGA-CTGACTCCA-AACTGACC----TATATGGCCAGCCCTTATTTGCAGGACCTGGGGTTCCTCACAGAACCTAGCCTTGCTTCATAATCCTGCGTGTGTCTGGAGGGAATGTGCTTGCACACAGCACTGGCTTCCCTG-TGGCTCAGCCCACAGCTTCATACCTCTCTGCAAAAGACAACACTGTTGACAGACCCAGTCTA-TAGAGGAGCCTCTACAGGCTTACACAGCTTCTACGCTTCTGCAAACTCCCTGATCCCTA----------CTGCGGGACTTGGTTCTTT--ACAGATTCCCAAAGCTCTTTGCAAAGCCTGCTACTCTTTTCCCTACCTG-TTCCAGCTCCCTGTCTGGGGCATTT-AGTCTGTT---------TGTCCACAGGTTTTAA-----------------------TTGCCTGCCTCTG-------TCTGTCTAGGGGGC----CTTTTTGTGGTGGCTCCCTCC-----TGCAGAGCCTTGCGTATTGATGTGCTTGTCCGTAGCTTCAGACTCTGCCCTTT----AACAGAGTCCTTTCTTAG----------CCAC--------ATTAGCACGGCCTTTCCCA----TGCAGAGCTCCTCGGTACCCACAGAACCCACAGTACCCACACCTGTTTGCAGAACCTCTTTCTCAGCTTCCA---GTCTTTGCTTATTTGCCAGGCCTATCTGACCTTCCTTGGGTAGTGCCTGTGTCTCTCCACAGCTCTCTTTGTGTATGTGGATGTTATCCTTGTATACATGAAAGGTCCCTGTTTGGAGAACTCATCTCTCTCCGGGGCCCTTGAG-TTGTACGATGC--TTCATCAGTCTATGGAAGACATGCCGGCTTGTAAAGGCCCCACCGCCGTAGCCCG---CTGCCCTGTGCAGACCCTGTATCTATTTATATA--CTGTTTCCAAC--TTTGTCAGACCTTTGTGTAGTTGCTGCCCTTAGGGTCAGAACCTGTCTGTCTGTACACCATTGAACCCCATTTCAAGA s bosTau2.chr22 39338327 1214 - 48330986 CAGGGCCTTTGCCTATTTGCACGGCCTATCTGAACTTGCCTGGATA----GAAACTCTGTCTGCAGGCTTTACTCCTACAAAGAGTT-CTCACCACCAGGGGTCGCTGTGT----CTGTGAGCACCTCTGTCTTTCTGTAGAGCCTATCCCTGTTGGCAGAGCCCATGTCAGTCTGCACGGTCTATTCCTAATAATTGCATGTGTACTTTTTAACAGGACCTGTTCCTATTCATGGAGTCTTTATCTGTTTCTAGAACTCATCCTTTTCTAAAGCCTGACCCTGTTTGCAGAACCTGGGCTCTCT-ACAGAACCCAGCCCTGTTTCAATATCTTGTCCCCGTCTGGAGCATCTGTGCTGGCCCACAGAGCTGATTTCCCAGCTGGCTCCTTTCAGCATATCCTGCCCTTT--CTAAAGATGTCACTGTTAACAGAGGCCGTCTGTTTGCAGAGCCTGTGTGGGCTTACAAGACCTCTCCTGTT-TGCCAAGACTCTG-TCTCTAGGGGCCTTGTCTACAGAGCCTGTGTCTTTTCACAGA-GCCTAAGTCTCTCAGCAGAGCTCATGACTGCTTGCCCAGCCTGTTTCCATCTCCCCGTGTGCAGGATTTGAGGCTGTTTCCCGTGGCTGTCCCTGCATACTAAGCCTGACCACGCCTAGAGAACTTTGGCCTGTTTCAGAGTTGCCTCTGTCTGAGAAGCACATCTCTGACTGGTAACTCTGTGCCTGTTTGCAGAGCCTTGCCTATCTGTGTGCCTGTTCATATCTGCAGAGTCTGTCCGTTCTGCAAAAAGTCCCTGTCTTAAGAGTTCATCCCCACCCACAAAGATTTGCAAAGCCTTTCCCATTTCTGAAAAGCTCCTCCATACCAGCAGAACCCAGGA---------CTGTTCGCAGAGC--CTTTCTCAGCATTCACAGCCTTTTGCTTGTTTGCCCAGCCTGTCTGAATTTCCCCAGGTACTGTCTGTGTCTCTTCACA------------------CAGGTCGTCCTTTCAAAGGT----GGTGTCTGTCAACAGAACTCATCTTTGTCAGGAGAACCTGTGCCTGTTCCATCCCTTTCTTGGGTCTCAGGAAGCTGTCCCTGTTTGCAGAG--CCTGTGCTTGTACACAGAGCCTTTTCTCTGCAGGTGCTGTGTCTCTTTGCACGGCCACCTTGCAGCAGTCTGAAAGACCTTCATTTATTTG----CCCTGTGTGCAGAGCCTATCTTGCC-TACAGGATTCTGTCTTACTTCAAGA a score=2144 s mm7.chr9_random 3877841 44 + 9745104 AGTGTGTTCTTCCAGAGGGCTCTAGAGTCTTCCAGAAATTAAAt s bosTau2.chr21 23263528 44 + 49724630 AATGCCTTCTTCCAAAGGACTCCAGAGGCCTTAAGAGGCCAAAT a score=10656 s mm7.chr9_random 3878012 735 + 9745104 gggatgggggaggctggtggatctcc------aaggtcg----aggtcagcctggcctacaaatagggttccagga-tagcTCACCTATAGCAGTCTAAACCTCAATGT------TCACCCCAGCTGCAGACCTGAAAGGAAGATTCAACCATCCTGAAACCAGACCA--CAGATctgttctccatcttttctaaagttagtgcaaaagatggactgggattga--------------------tgaagt-agtataaacatgagccagagatttGACCACCAGTGCCTTTCCTCAAGCCCTACAGT---GACTCAACCAAATTAGCAGAAGTCTATACAAGGCCCCTGTCTGGAACACCCTTTGTCCTGGGATCAAGGGCAGGGATGGCAGACATGTTAATG----AAGGATCATATTTCTGTCCAAAAGGCTTAAGCATAAACACCTCTTTCTTCCCGGCAGAGACAAAGGTGAAAAAAAAATAAAGTTGTTACTTCTTGGCTTAAAGT-----CCTGGCTCCTCAGAGTCTCCAGATGATGTCCAGAGGCT----------CCATGGATGCCC-------------GACTACTGCCATCCTAGTATCTCTCCTACCGCCTCTTCAGCACAT-------GACCT-AGCTAGACAGAGTTGCAGACACTGGGGAATCTTCCCCAAGGAAGTCCCTCCCTCTACCATTCCTTTACCTACCCAGAAAGCAAATACAGA---CTCCTTGAAAACATAGATCACATGTGTGT--TTCTCTCAGAGCTTCCAAATATT--TACAGAGTGGACACCTA-GAGATAGTTGTT s bosTau2.chr21 23263847 780 + 49724630 gggatgggggagcctggtgggcttccttctatggggtcacacagagtcagacatgactgaagtgacagcagcagcagcAGCTCCCCAGTAG-AACTTCCCCCTAAATGTAGCATCTGCCTATAGTAGTATAGCATAAAGTGAGGCTCATAAATGCTGAAACCAGAACAACCAGACCTGTTTTATGTCAGAGTTGCAATTAGCATGTGGTCTATACTGAGACTGACCAGCTAATCTCAGGGCTAATGTAGTGAGTGTTAACTTTCACTGGAGGTATGA------GTGATCCTCCTCAGGCCCCATAGTACAGATTCTTC---AGTGATGGAA-------------------CTGGAATA-----TGACCTAGGGCTAGACACATGG--TGTTGGCATATTAACTTGCCAAGGATCATATTTTGGTCCAAGAGGTTTGGACGTG--CTTCTTATTCCTCCCAGTGGAAGCAATTGTGAAAAAATGCCATC-CAGTCACTTCCCAGCTTGAAATTCTTGCCTGGATCCCTGGAGTCCCCAGATCAAGTCCAGAGGCTGTGACCAGACCCATGGACCCCCTCCAATACCTGCCGGTTGCTCCCAGCCCA------CTGCCACC-TCTCTCCAGCATGCTCCAGCCGCCCTGAGCTACACACAGTTCCTGAAGCCCAGAAATCTTCCTCATGCTGTTCCCTTTTCCTACAGTTCCCTTCCCAGCCTAGGAAGCAGGTGTGTACCCCTCCCTCAAGGCTCAGATCAAATGCATGTAATTGTCTCATTTTTTCCAAGGCCCAACACAGCGTGGGTACTCAGGAGATACTTGTT a score=11012 s mm7.chr9_random 3881149 428 + 9745104 GATAAATCAGCCTCAGATCCTGCCCTATGGGTGGTAAATAGTGTTAGGTCATGGCAGGGCTTCAGCCTCACCCTTCTAGGAGTCCACTGT-TAGGGCCCAGCACCAAGGGAGAGAATCATA--TCATACAGACATGCCCAGCTTCTCACCTTCAGACA----GCACAGCTGATGGGGAAGGGAGCATGTGGGCACCAGGGAGGCTCATGCTGGGCCCAC----GGTACTCACCGTGTCCACCCCTCCTGCCAGCATCTCGGTAATGTTGGCCTGGATGTTCTTGAAGGGCAGCTTGTTGCCCCCCAGGAGGCTATAAAGGACACCAGGGTACTGGCTGAAGTCTCGCTTCTGCCTTAAGTCCCAGTAGAAGTTCTGGGTGTACTCATCAGCTGTGGAGGAGGAGGA---AGAACAGAATGAGGC--------TCCCTGCTGGTGCGAGGG s bosTau2.chr21 23266948 417 + 49724630 GGTGGATCAGCCTCAAGGCACGCTCAGTGGATGAC---------------------TGACTTGAGC-TCGCCCTCCTAGAAGATTAGCATCTAGGAAGTGGGGTCAGGAGAGGGAGATGGAGCCCTCATGGACAGG-----------GGTTTCAGACAATGAGGAAGGCTGTGGGGAAAGGGCGCAGGAAGGGACCGGATGTACCTCTACGGCCACCTCACTGGGTCCTCACCGTGTCCACACCCCCTGCCAGCATCTCCGTAATATTGGCCTTGACATCCTCCAAGAGCATCTTCTCACTTTTCAGGAGGCAGTAGAGGATGCCTGGGTAATTCCTAAATTCTGTTTTCCGTCTCAGGTCCTGGTAGAAGATCTCAGTGTATTTTTCAGCTGTGGGGCAGGAAGAAAGAAAACAGAGGGAGGCCAGAAatttccctggctgtgcagggg a score=45804 s mm7.chr9_random 3882720 1476 + 9745104 ACTGCCAGAGG---AGTCCTCACCTTTATTGAAAATCACATCCCAGGCAGCTGCATGGTCCTTCCAGGTCTTAGTTCTGAGGAGTCGAAAGAAGTCTGGAGGCAGGTTGAGCATGGGGACACTGGTGTGGAACATCTGGTAGACAGCATTGATGAACCGCTGGGCCTCGGGATCCACGATCTCCTCCAGCATCCCCATGCGCTCCCCAAATATAACACTGCTGATGGCTGCAGTGAGAGACTGAGGCTAAGGACCCTCTTCCAGCCTGGCTCTCCAAGAGCCTCAGCACCCAG--AACCATCCCCATCCATGCCCACCACACACAGGGGCCCTTGC--TCATCCTTAGCTTCCTCCAGCAAAGCAACTGAGACCTGAGCCCCAAGAGATGGAA--------------GAAGACTGCCCTTCTGGCTTCAATTCAGGTCCCTCAGAGGGATATAGGGGCGGCCCTGATCAGGACGCTTTGA-TGGGAATAGTGGACTC-----CACCTGAG------------CCAGGACGGAACTGTCC---------------------------------------------------AGGAGAGATTTCCC-TTTGTTACTGACTGCAATCACTACATCACACATGGCCTGGGAGACTTAGGT-----------TAGCAGTCTCCA------AGTCACCCAGGATTCAATCTGGCTGAAACTAAAAGATT-CAA------------GTTTTCTCACTTACCACAAGAAAAATTTGAATGCCAATTTTATACCAAGCCCAGGGTACCCCAGATCTCCTGCAGGCATCACATGACTTCTActaagccata-------tgcatgcactgttctatgcct-ggtctatgacgcctaaccgccttacccagtctggataatttctaagtgtccttcaacagtcagcccagatcaacccaggaggtcccctctTTCTTGCTCAACTCCAGAGG-------TCTGTTTCTA-CGAGAGGGAGACTTGCAGCATGCAGGGCCAAGCCAAGTTCTGGCTTATGGAGGATGGTGGCATGGAAAACCTATGATCTGGGGACT------TCCCCAACATGAATGTCAGATGAGAGC-TATTTGACTACCCCCGAGAGACTGACAGTACAGAGTCTGTCCA------------AGAAACCAATCC--ACACAAGCACAGGGCCTG----GGGTCTCAAGGTAAAAGGGTGAACGCTGGCTCCCCACCCCCAG--CTCCTGCCAGTCAGTCATGTGTAAGATCCTTACACTCAAAGGAAAAGCGGAATAGGTCATCACTGATGACCCCTGAGAAATTTCCAGAATTTTGCTGCTTGATGCGTCTGTGTAAGACTTTGATGAAGTCCTGAGCTACACCTTCCAGCAGGGGCACGAAGTTCTTGATGGCTCCAGGCGCCATCACCTCTTGGTTTAGGACGATTCGGTCTTTCTTCCAGGCATCTGAACTCCTAGAGAAACACAGGTCCC----GCCTCAAGGTCACAGATGCCACACCTGGCACCTAC-----GGACTTGCTAGGCTCTCT----------AGCTCCAGCACCTGCAGCAACATCATCTCCCCTCCTCC-CAACATTTGCTCTCCTCTCCTACTCCC--TCCCTGCCCTGCctgg s bosTau2.chr21 23268156 1612 + 49724630 ACTGCCCAGGGTACAGCCCTCACCTTTATTGAAAATTGTGTCCCATGCGGCTACATGGTCCCTCCAAGTCTTGGTTCTGAATAGACGGTACAGTTCTGGAGGGACGTTGAGCAGAGGGACACTGGTGTGGAACATCTTGTAGACGGCATCAATGAACTTCTGGGCCTCGGGGTTCACTGTCTCCTCCAGCATCCCCAGGCGCTCCCCAAACATGACATTGGTGATGGCTGCA-----------AAGTTGAAGAATCTCATCCAACCTGACCATCTGAGAGCCTCAGCTCCCAGGAAACCATCGCCCCCC---TCCCCAACACATGGGAGCCCTTGCATCCAACCTCAGCCTCCTTCAGTAAAGAAACTGACAGCTGAGTCCCAAAGGGCTGAAATTGCAGGAGTAAGGAAAACTGCCTTTGTGGCAGTCAGTCAGGCCCTTCAGAGGGTCATGGGACAGACCCTAAAAGGGATCCCTCAAGTGGGAGGCAGAGCCTCCAGCACAGCTGAGAAAAGGCTCAGACTGGGAGGAAACTGCCCTCTCCCGCTTCCAACAGCACCCCCCAGCAGCCTCTCAGCTTTCCTCCTGGGAAGAGAGACTTCTCATCTATGATTGACCAGAGTGGCTAAATACTTCCTGGAACAGGTCAGATGGGTGTCTGGGGGGACATCAATCCCCAGTAACTGGCCATCCAGGGCCCACT-TGGCTGGTCATAAGAAGTCACAACAACCCCCAAGGGTTTCCTGCCTC-------------TTGGGTCAGGAATTTTATGCCAAACCCTGGGCACTCCAAATCTCCTGCAGTGACCACGTGATccctatcaagccacagggcctttgtatgtattgt----tgcctctgcctatactgcccaacctctttattccatctggaaaattcctacacatcctccaataccctgtttcaataacccacccaaccctcccctcccctcccagacTTGAAAGGGAAGGTCTCTGTCCCAAGAGAGAGAGAGATTTGCTGAATGAAAGGCCAAGTCAAACCCTGGCTTTTGGAGGAAAGGGGCAATAGGGACCCACATTCTAGAAATTCTTGGCCCCATATCATGAA--TCAGATGAGAGCGTGCAGCTCTCCCCCCCGGTAGCTGATGACAGAGAATGTGTTCAGTGGCTCCTCCCAGAAACCAATCCTGACACTTCTTCAGAGTCTATTCTGGGTCTCAAGGTGAGATGCTGGGTTCT-----CCCATCCCCAGGACTGTGGCCAGGTAG----GTTCAAGTTCCTTACACTCAAAGGCAAAGTGAAACAGGTCTTCCTTGATGTCCCCTACAAACTTTCCGGAGCCCTGCTGCTTGATGCGCTTGTGCAGGAGGCTGACGAAGTCCTGAGACACTGGATTCAGCAGTGGGATGAAGTTCTTTATTGCCTCTGGAGCCATCACCTCCGTGTTCAGGACCACCCGGTCTTTCTTCCAGGTTCCTGACTTCCTGAGAAAACATGGGCCCTCAGGCCCTCATGGTCACAAACCCCAGGCCTGGCAAACACAGAGGGAACTGACTAGGCTTTCCCAGGAGGCTGAGCCACAGC-------TCAAAGTCCACTGCTCACATCCACAGCCCTCCCTACCCTCCCCTCCTCCCAGCTTCTGCCTGGCCTGG a score=6515 s mm7.chr9_random 3885381 312 + 9745104 TTTATCAGTATGCAATTTGGTAGAAAATAGCATCTATAT-CTCAGTGGCA--GATCTCGC--TGTTTCTCACAGTGGCTTCAGGCTGTCAGGCCcttattta-----------cagctgtactg-----ccaacacctggcacaaggcctggtacctagcaggtgtttgataaaGTGGCACTTCATAGTTAAAGCAATTAGTGAGAACTTTGCAAAGTCTCCA-CTATTCATGAAGAACTTCAGCCTGAC-ATCCCCCTGGGAGTCGGCAGGACACTTCCCTGTCATGGCTGTTGTCACCATCGTTTGCCTTATGGAA-CAGGAAGATGAGCAGAG s bosTau2.chr21 23271199 324 + 49724630 ttttttgatgagcaatttggtggaaaatggtatctATGCATTTAGATACactgatttgttcatgcttcttactgctcctttagactataagggactctcctaggggcagggctccaccctacttgtcactcagagttcagcaccaggactagcacataggaggcactcaataaaatgggtcttactggatgaaccaatgaatGAGAACTTTTCAAGGCCTTTAATTACTCAGTAAGATCTTCTTCCTGACCATGTTCCTGAAGGTTGGCAGGGCAGTTCACCCTCC------------CCATCATCTGTTTGATGGAGGCAGGAAGAGGACAGGGG a score=10222 s mm7.chr9_random 3885794 352 + 9745104 ACTCAGAACTCACTTAAACAGGACCCCAATGGGCCTCTGATAATACTGGTGATAGGCCACCCAGGGGGGCACAAGGAACCGCTCCGGGTTGGGACCCTCGCATGAGAAGAGTATCGACGCATCCTTGGGGTCCACGATGTAAACTGACTCCAAAGTGCCCAGCTTCTCCCTGGAAAGACAAGAGC-GGCTGATGTT------GGACCTGAGGC-AGCCGTGAACACACACCCTGGGCAGCCAGG---------------CCTCTCTACACAAT----------CAGTACACAGCTTTCTGGC-------TGGGACCT---------TCCCTTTGCTG---AGCCTCAGTGTCA-CCTATGAG-------------ATGGGAAATGGATGTGACATCTGTCTTGCGGAGCTGCTGAAGA s bosTau2.chr21 23271642 414 + 49724630 ACCCAGGACTCACTTAAACAGGACTCCAATGGGTTTCTGATAATATCGGTGATAGGCCAGCCAGGGCGGGATGTCATATCTCTCTGGGTAGGATCCCTCGAACTTGAAGAGATGGGCCACGTCTTCAGGGTGAATGATATAAACTGACTCCAAATTGCCAAGCTTCTCCCTGGAGGGGCAGAAGAGGGTTGCTGTGAGGTAAGGATCTGAGGAGAGTCCTG----CAGACCCTGCACAATCAGGGCACAGGACCCAGCTCCTCTGTAACCACTTTGCGGCTGACAGCACggagcagaccggcctgggagtggatcctggcccatagtttcctcactgtatgactttagtctcatcctctgagtctcagtttctttagtggagataaatacagtacctgcctgacaggattgctgaaga a score=22524 s mm7.chr9_random 3886863 502 + 9745104 TGAAAGAAAAAGGCAGAC------AGGAAGCAGGAGCCGTGTGCCTCCCCCTGT-GCCTGCTCCA-CCTGCTGCCAGGCTTACCTGTAAATGGGGCCATACTTTTGGAAACTCTGCATCTGATGGTAATGGATTTTCTGTGTGCCACTCTCCCTCCAGAAGTGGTACAGGTTTAGCCAACCATTGTCGCCAGGGGAAGGGATCTCATTGAAGGACCTAGGACTGCTAGTAGAGGTACCAGCTCCCTTTCCAGTACTCA----GCACTGG-----ACCCTGCCACGTAGGGCTCAGGAAAGGTTGGCAGCCTTTGACCAGCACTGAGCGCAGGGAAAGTCCTTTAGCCAGCATACTGTCCCCACGACTGCCACT--------TCCTGCTGCA-CGAGTGTCTCT-GCCCCAAACCTCCAGAGCCACACTTATAACCACCAGCTCAAGGCTAAGAGAGAAGCTGATGGAGCGGTGACCTCCCCCCTTCCTCCTCCAGAGGGCTGGGCTCACACAGCCCCTCCCAAACTCAG s bosTau2.chr21 23275113 520 + 49724630 TGGAAGGGGAGGGCAGACCTTTCAGGGAGGGGGCCACCACAGGCTTCCCTATCCCGCCAGCCCCAATCCTCTGCCAGGCTTACCTGTAAATGGGGCCATACTTCTGGAAGTTCTCGATGTGGCGAAAGTGGATTCTCTGTGAGCCCTTCTCCCTCCAGAAATGGTAGAGGTTAAGCCAGCCATTGTCACCAGGGGAGGGGATCTCACTGTAGGGGCGAGGGGTCTTTGTGGAGATGCCAGCTCCCTCTCCAGTGCCCACCCTGTGGTGGCCCCAGCCCTCCCCCACTGTGCTCAGGATGGGTGGGCAGGCTTTGACCAGGGCTGAGCGGAGGGGAAGCCCCCTTGCTAGCATGCTGCCCCCACAGCTGCTGCTGTCTCTGCTCGTACTGCAGCAGGTGACTCTGGCCCTGGGACCCTGGGACCCAGCTTATAATCACCAGCTCAAGGCTAAGTGAGAAGCTGACAGGGCGGTCAGCCTCCTCCGGCTGACTCCA---------GCCCACACAGCTCCTCCCAGACTCAG a score=5394 s mm7.chr9_random 3894113 543 + 9745104 TTCTTTCTTCCCAAGATTCTACACTTTTAAAATAAATGTCCCCTTTTGTACAAGACAAAATAGAAGAAAT-------GATTAGAATTGCCAAAGGTATTAC--------------------------AATCCAGATAGAAAGACAGGCTTGTTTACAA-----GAAAATAAGTAAAATTAAG------GTGGGTGTCACAGGAAACATTCAAACACTACAATG--------GGTGTCACTGTTTATAGCAGCATGGGAGGGGACAGTACACCG-------AGGGGCAGGCACACCACAAGGTATGGGTTTCACAGCATCAGTTAAAAAGTTGATCCCAGggggctggtgagatggctcagtgggtaagagcacccgactgctcttcagaaggtccagagttcaaatcccagcaaccacatggtggctcacaaccatctgtaacaagatctgactccctcttctggagtgtctgaagacagctacagtgtacttacatataataaataaataaatctaaaaaaaaaaaaaaaaAAAAGTTGATCCCAAATGTGTCACGTTTTGGGCCCTTTGAGGTTTAATCCTAAGGATCTGGACTACTCTA s bosTau2.chr13 6716729 426 + 62721844 tttttttttttttGGATTCCAGCTTTTTTATTTA---TTCCCCTTTTA------ACAAAGTAGAAGAAATAATACAGGATTAAAACTGCAAAAGTAGTTAATTGGTAGAACACACATTCACACAAAAAACCTGGATAGGAAGACAAGCTTATATACAATGAGGAAACACACGTAAATTATGGTAGTTTGTAGGTTGTATACGAAACATTTAAAAAGTCAAACATGCTACACGGTGCCACTGTTTACAGCAATATTGAAGGGGAGAAAATAACACTAATTTAGGGACTGATATACCACAAGGTCCAGGTTTCACAGCATCAGTGCAA---------------------------------------------------------------------------TAAATTCACAAAACTATAT----------------------------------------------------------------------------TACAACTAGTTAATCAGTTTAAGAA----------------TTGTTCCCAAGTATATCACATTTCCAGCCCTCAGAGGTCCATTCCTACAGATTTCAACTACTCCA a score=31999 s mm7.chr9_random 3895400 1026 + 9745104 aaGTGGTGAATTTGATCTCTGTATTTGTGAAACCAGACTTTCAAGCAGACCCCG-AAGCAGAAACTAGAAACATTTCCCAGTAGCTACAGACCATT---------CTAGCTAAAGCAAG------CTCCAACAACTGTCCAGACCCTCCACCCACCCACTCTACTAAAG-------TTCATCGGTTTAGTGTTGTAAAGGGGGTCATCAAAAGTAAAAATGCA-TCAGCCTTGA----------------AGGGGGGATCGAAGTTATTCATAATCACCAAGGAGTGGTCCACTTAAGGGCTGCAGCTGAGCATGTACCCACCTATACTGGACGACACTAAG-----------ACACTACACGCCAATGTCTGCCATCACCAGCAAAGTGGATG-CAGCAAAAAAACCACTTCTGTGAAGTGGTGGTGTCCAGAAG--AGGAGTGAGACAGCTCC--------------ACTCCGCTAACCACACAGAAGGAAGCCGATGCACCGTTCACTCTCCTTTGCTTTTTGCTTTCGAGGCTTGTTCATCTAACACTTGCCCAGCCCAATATACTTTCAAACCAGCTCACGATGTCTTAGTTCACAAAGCAACAGCACAGATGTCACCATCAGGTATGC-------AGCCTGTGAACTCGCCGTCCCACCCAATCAACTGCA-CGAAGGAAAGGACTATGGTGATCAAGGTCAAGTACATTTTCGGCTCTTCTTCCTTTAGCAGAAAGATGTGTTTCCACCCGTCCAAAGCCCTTCCAAAACCGTGCTGAGTTTTTAATAGGTTGATGCCCATGTCTTGAAATGGTTGCTGTTCTTTAAAGTGGTTCATTTACTGGAGTTAAAAATTTTAGGTGCCAGGATGGAAACAAGGTAGTCAGCCAGACACAAAAGCATAACAAAGCAGGAAGCACCTGCCAGCACAGATGGTCGCAGATACTAAAGAGGAACAGCATGG--ACCACACCCCACAAAGCCGA-GAAAACTAGGCTCTTTCCAA-CGCAGGACTGTGTTGGCCACCAGCATCCCTTCTCCCGATCCTGACAGCTGCTCTTCCAGAC---------CTGTAGCCATCAGGTTCCTGCTGCTGTTATC s bosTau2.chr13 6717685 1054 + 62721844 AAGTGGTAAACTTGGTCT--ATACTCATGAAGCCAATTTTTTAAGCAGACCATGGAAGCAGACGATAGAATAAGCTTCCTGAAGTCACAGACCACTATCCTGTATCCAGCTAAAAAAAAGATCAACTTGAACAGTTACCCCGAGTC----ACTGTTAACTGTACTAAAGGGTGAAGTTCACCACTATTTTATT-------------TTAAAAGTAAGAGTTCAGTTAACCCTGGGTGACAAAAAACCAAGATGAGGAACTGAAG---------------AAAGAGTTGTCCATATAAGGCCAGCTGCTAAGAACACACCCAT--------GAAGACACTGGGCATAAAGCCTTGCTTAACAAGTCAGAATTTGT-ACTAAGGGCAGAGTGAGGGACAGCAGAGAG-CTACTTCTGTAACATTTTAGTATCCAAACAGCATAACAGACACTGTTCCCAAGGACAATGTATACTCCATTAATCACACTGAATAAAGCAAATGCTTTATTCATTTTTCTTTTCTTTTTGTTTGAGAAGCTTGTTTATCTCTCTTTTGGCCATTCCAATGTACTTCGAAATGATCCCACGTTGGTTCAGTCCAGGAAGCAAAAGTAAGAAAGTCACTATCAGGTAGGTGAGAAGGAGGTTGTGGACTTGCTGTCCCACTCAAGCAACCGCAGCAAGAGAAATGATCATGGTCATGAAG------TACATTTTAGGCTTTTCTTCCTTTAGTGTAAAGAGGCGTTTCCACCAGCCCACAGCTCT---------GCGTCGAGTTTTTACTAGATTGCTGCAAATTTGATGGAATCTTTGCTGTTGCTTG--GTGGTCCATTTATTGGAGCCAAAAATTCTAGGTGCTAGAATGGGAACAAGGTAGTCAGCCAAGCACAAAAACCTAACAAAACAGGAAACACCAGATAGAACAGATGGATCTAGATAGTAGATAGAAACACCAAAGAAACCACACCCATGATGGCAGGTGGAAACCAGGCTCTTTCCCATCGGAGGACTTTATCTGCCATCAGCATCACTTCTCCCCATCCTTGCAGCTGCTCTTTCAGACTTGCAGTCTCTGCAGCCAACAGATTGGTGCTGCGATTATC a score=8050 s mm7.chr9_random 3947651 1009 + 9745104 GAGAAAATAGCACATAATA----CCTTCCAATTCCAGTTTCCATGACAGGAGTGTGAGGTGGAAGGTAAAAAGATTGGGAGTCATTAAACCCAAGCATCATTGTTCAGGCACCTAGATGACAATGTGTGATATTGAAAGGTGGTGAGTAGAATATTCTTATTTCCATAAGGACTGTGAGAAGTTTCTTGCTACCC---TAAAGGTAACCTTGTAGGCACTAAGGACTTCCTACTCCTTTAT-AAAATAAAAGAATGTTGACAATG------ACAGTATGCCATTGTTCCTGTTAGTAAATTACAGAAAAGATCCTATCT---------GCTTTGTAAC--ACAGATAATGTTGTGATGTGGAGCAAAAGACACTAGGCAGGAAGAAGGAAGCATCTGGGATTCTCTTTTCATTCAATTCAAAA------CCACCTGGTTC-TAC-CTAAGGTCAGAATGACCCTTACCCACT-AGGCAAGATA-GAGGGTACTTTCCTGGGCCATATGAAGGGCATATTCCTTATCACCAGATCTTGGTTTTATAAGTCTACGCAAATCAGAACTGGAAAAGCTATACAGATAAGATATAAGCCCTCAATTAAAACTGCAAATAAAGAAATATACTCACAATAAAAAT-tttttttgatacaaggtctcttatttagccctaactggcctggaacttactatgtgtagtgggctggcctca---tactcaaagagTAAGGGTGTTTCATTATGCCTATCCCATAAAAAAATTTAAAAGCACAAATAAATTACTGTGCTACAATATTGAGGAAACATTACCAAAGGCACCcaacaacaacaacaacaacaacaacaacaacaacaacaacaaaacaCCAGATGCTAAAGTGATATATGTGTTAGAA----TAGTTAAAAAGGGTTCATGGGAAAGGATAAGTATTGGAATGTATT-----TAAAAGGGCTAGTGTTTTAATTATTAGAATATGGCT-ATTTTTTCT-TACTTT---------TGTTTTCCTCCACTTCATATAATAGGCATA----GTTGATGTTATAATCAGACATTTGTCT s bosTau2.scaffold4369 39583 892 - 66790 GAGTGAAGAGGACAGGATGGTGGCCCCCCATTCCCACTCACCATGAATGGTGTCTGGAGCAGTAGATGAAGAG-----GAGTCATGGGACCCCAGCATCACTGCTGAGGCACACAGGTG-CAAAAGGTAATACTGGTGGG-GGTGGG-GGATTCTTCCTGTATCTTTGAGAACCATGGGGATTCTCTGGCTCTGCTGGTGAAGGGGGCTTCAGGGACACTAGGAGTTTC---CTCCTTGGTGGAGATATCAGAGCACTGACAGCAATACCCACAACATGC---TGTCCAAGTGAGTGACCCA-GGGAAAGGGCTCACCTAACAACAGAGCTCTGTCACATACAGTTACTG-cattcggttgaacaaaaggagccagacagaaagaggacagcatttgtgattccatttatgtgaagctataaaagaggtacgtctcattcatgcactgaagacagactggcccctgcaaggtggggctgggtgtgagggcatgttctgggg-----tgacagggctgctctctatcatc------tggtgacagggatgtatgtgtatcaaaact---------------------------tcccca-------------------aaatgtacacctaggactagtgtgtttttgctaca---------------------------tgtaagttac----------------acatcaatCTAAGTAACAATTAAAGAGATGTATTTATA----------AAGAATTTTTAACAACATGGGTACATACCTATACTGTAATTTTTAG-------------------CCAAAAAAAGGAGCAGC----------------------------------ATAATGAACTGGTATGTGTGTGAGAACAATTAATCAAAAAGtatgcatgggaaaaggtctggattaaaatacatcatgtgttgagggact-gttttgagattgtgagacaatgactaatcttttctgtactttctatttttctgtttttcctaacttgatacaatgagcatgatgtgttagttttagaattagaTACATGTTT a score=6897 s mm7.chr9_random 3949745 437 + 9745104 AGATTCATTTGCTGTTTTTCACCGCTCATTTTACTACTGATAAGGACTTAGACTGAAGTTGCTGTGTCCTCATAATTCA----CGTTGAGTTC-----------CCTTGGACTCAAAGGGAAAGATCGGCATC-TCCCTAT-TTGTCAACAATGCTCTGGATATTGGTTCAGTGAGATTGTTGGCAATGAGAACAAAGCAGGGAGAGGGACATCAATACAATGACTAGAGATAGAAAACTTGCTCAAAGACTTACTGGTGTCCCAGAAGGAGAGATGGCTTCAGATACTCCATATGGGCACTGAGTCTAGAGGGACACACTAACCATAAGCATTAATTTGTC----AAAGTCTAAGTACAACATATATGAGAA-TAAAGTCATGCAAACTGGGATGCAAAAAGCAGTGAGAAAAGCAGAGA-ACAAAATCCAAGTTGTAGCACAGTGCGCTATTGTTGTG s bosTau2.scaffold4369 40486 432 - 66790 AGATTCGTGTGCTATCTTTT-CAGCCCATCTCACTGCTGACATCGATAGAGTCCGTG-----TGAGCCCCCAGGGTTTCAGTTCATTGAGCTCATGCAGTTGGCCCTCTGAACCCAAGAAAAGAGTAGGTGTCCTCCCCATCTTGTGTGTGATGCTCTGAGTCATGGTCCAGAGATGGCGTGGGCAAGCAGAGAGAAGCTGCCCTCAGAACTTGGGTACAATGACTCGACCTGGAGCAGCTAGTGAAAGCTTGGCCAGCACCCCAGGAGGAGGG-------------------CTGGGCATCAAGTCCAGAGCAGCAAACCAGCCAAAAG--TTCATTCCTCACGGAGAGTCTGAAGAC-CTGCATATCAGAACCAGAGCCCTGGAAACTGGAAGGGCCAAGGTAAGAAGATAAGCAAAGATGGGAAAACTAAGTCATGGCATGATAAACCACTGGTTTG a score=31763 s mm7.chr9_random 3952905 1884 + 9745104 GGGTCTCTTGTGTCTCA---TTGGC----AGCTCTGTGCT--GTTATTAGCTCCGCTGTCATTTCTTGATGTTTTTAAAAATTCCACCAACCACCCAGCTGATCTGATATAGTCACATATATGGCATTATTATATTATCCTAAATTTTATCATGCACTTCT----CTTTGT---TGTTCCATG---AAAAATCCTTCACGG--CTCCAGATAAATTATGTTCTTGGATTGAGACGCTCTGTTACCTTCAAATCTGGTATAGAATAGATACTCATAAG-------TGCCT-------ATGCAAAATG--------------TGTAATTTTGTATGTCACTTGTTACCA-GATACATGAGGGAAAAAAAGA-----AATATGTTTAGTTTTCAGGAAAACATATGGTAAA--CCTGTTTGATAGCAGTTGTTTTAGTTTACACTGAAGAGTCACACAGAGCAGTAAAAATTATGTGTGTGAAATGTAGGACAGCGAGAGGAAGATGAGTAAAAGAA-------------------------------------------------------------------GTAGC-------------------------------------AAGATTGGTGT-------------------------------------CTGGGATAAAGCTCCCATCTC------------------------------------------------------------------------------------------ACTTTAAA-TTGGCTGGAACTTACTTTAATCAAGAGCAACTA-CGAGAAGAATAAATTCTCTTGCCATTTTGGCTTTACCAGTGAGAAGCA--GAGATATTGCATGCACTACTTGTCTCTTAGACAGTGACTCTCTTGACTCAAATGTGGGC-TTTAATTA-ATGGATATAAGTGTTCTTCTGTCATTAATACCCTTTAATTT-TTCTGATTTCCAACGAAGTGTGTAGTTGGATGAGCAGAGAACATAAGTAAAAGAGTCTGAAGAAGGAAACTCCTCAAAAAACTTTCAGTCCAGAGCTGCCTTCTATTTTCTACTCTAAGTGCAACTTTAAAGAAAAAAAAAGAAGAACTGATCTGACACCCCCAACCCTGAACACTACGTAATACCTTTTCTCATTAAACTCCACCCTC--TCTGCAAGAAACTGTG--TTTCTTACTTT-ATACTGTCTTCATGTTAGATTTGTACAGCTCTCCTAGCCAGAGGAGGTGAGACATCCGTTCCCCCTACAAGAGACTCT---GGTAAGTCACCTCTCAGC---CCTTGCTTGACTAGTTAGCTCAGCTTCCTTGATGAGTAAAAACTTTAACAGGAAATCCTGAGAGGACATCTGTCA-GCACCAGGTGCTCACAGAATTATCTGAAAATATAATCTTTAAGATACAGGAAAGTTAAGAATTTAGGATATGTTTCAGCATGTGATGTCATCAAATATCTGAAACATGATTGTGAATGAAATATT-TAAAAAGAGAATTTTTTAAAGCAAGCAAATCCTTACCTTTTAAAA-----ATAGCTTC-TAGAACAATGCTATTGGTTGAAATCTGGTTTGATAATCA-----GCTGAAAAGAGGTGAAATCTTTCCATGGGTCACGTGTATATCCTTGAACATGTGTGT-ACCAGAAGC----TCTAAGTTTCTTGTGCTCTCTTGTTCTCTCTTTCTCTTCTTGCCCTGACTGTCTCCAAGAAAATAGAGAAACCTAAAAATTGTCTA----------AGGTCACAAACATCAA---AGTTTCTACAGCACACTTAGTAGAAAATTCTTGTTCTGGCTTAG-CCTTGAAGGTGTGACTTTTTTTTGGGGGGGTGCTTCTCTTTGCTACCTAAATGGGAAGTATGAAGAGCTTTAG-------AGAACTAAGTAAAAAAAA--------AAAAAAGTTTGAGGAATTTAAACAGGGCAAGCCAGTTGGT------TGAAGAGGCTAGACAGTGAATAT------CACCCATGGAGATGAAAGAATCATTTTCTACTTGATAATCTCTTCTACGTATATGAGAA-----CTTTTGATGGTGGAAACTCAGGAAGCAGAAAT---AACTTTAGAGAAAAAATGAGGATGGTCTAC----TTTAATTACTGA-TGCTATATTCTATGACACTGTTTGAGTGTTTGGACATTACATCATTTTATCCTGACTACAGAGAAGCACC s bosTau2.scaffold4369 42635 2148 - 66790 GGCCCTCCTGTGGCTCAGGGCTGGCTCTCAGTTCTGTTCTATGTTCTCAGTTCTGTTGTCAACAATTGAGGTTTTTAGATAAGTAACCAACCACCAAGGAAGCCTGGGGTGACTGGAGATATTGAA-----ATAGAATCCTGAACTTGACCCTTTTCTTCTGCCACTTGCTGCCTGTTTCATGTTGAAAAACTCTCAAAGAAATTCCAGATAGACTGTATCCTTGGAGTGTGGGACTCTGCTACCT------ATGTCACAGTACAGCTACCCACAAACATGGGCTGCCTTGGAGGGCTGCAAAATGGTGAACAAGGAGGCTAACATTTTATA-ATGACGTGCCCCAAAGGTACTTGATCTGGAGAAAGATGGGCAACACGTTCAGCTCACAGGTGAACGTACAGTAAAAACCCTTAAGCAATCAGCTATTTTAGTTTGCAGAGGAAAATAGTATTGGGTGGTGAGTGT-ATGTGTGTGAGTTGTGGGA-GGAAAGGGGGTAGTGAGGGAGTGAACAAGTGGGGGgcatgcacgctcagtccctcagttgtgtcagatttcttacaaacccagggactgtgtgtagcccaccaggctcctccatccatggattttccaggcaagaatactgaagtggtttgccatttcctcctccaggcgatcttttcaacccagtgatcaaacccacatctcctgtgtcagcaaacaggttcttcaccactgagccagctgggaagcccAGGTTTATGGAGGATCACAGGGTCAATGTGAGATGTTCCCCCCACTTTAAAGTCAGTTTCAGTTGGCTTCTGTGGAAGACAAATAGCAAGTGGGTCAGAATCTCTCACCCtctgagcctccccattgataagccctgcagtctagtacaaatcatttgtctcttggacagcagtttctttcagtaaaacatggccctttgactagatgcttatgaatgttctagttc---taatatcctttaattcCTTCTTTTTTCTAACCATTTGGGTAGTTGGGTGAACTAAGAAGCAAAAAGAAATTGCGTAATCAGGGAAACCCATGAATAAAGTTTCAGATTAGAGATCTATTTTCTAGTCTATTTTAAGCTCAATTT--AAGAAAAAAAAAAAAGGACTGTTCTTTGAT----GATTTTTTGCACAGCCAGATACTTATTC-AGTAAAACTCCGCCCCCAACTCAGAAGAAACTGTGCATTTCCTACTTTTATGCTGTCTATATGTTTGACTTGCACAGCTCAGCTGGTCAGAGGAGCTGAGACATCCGTT-CCCCTACGAGAATCTCTCTCGGTAAGTCGTCTCTCAGCTAACTTTGCCT-ATTTCTTAGCGCAGCTTGAGTGATGAGTAAAAGCCTTTACAGGAAACCAT-AGAAAACATCAGAAATACACCAGGTGCTCACTGAACTATCTTAAAATATAATCTTTAAG-TAAGGAAAAAGTTAGAGTTTAGAATCAGTTTCAGACTGTGATAACATCAAAGATACAAAACAGGATTATGAATGAAAGACTATAAAAAG----------------------CCTTCACCTTTCAAAAGAAAGATATTTTCAGAGAATAAT--TACTGGCCAAAACTTTGACAGACATTCCCTTTTGGTTAGGAGAAATAAAAGCTCC-------TCAGCAGGACGCCCCTGAACATGTGCCCGACCAGAGGCTGCGTCTAAG--------------------TCTCCTTTTATTTCTG------------CCAAGAAAAGAAGGAAGCCTGAAAATTGTCCAAATTGATAACAAGTTATAAGTATCAAATCAATTTTCATTGCACATCTAGTTG---ATTCTTTTTCTGGCTCAGAATTTAAAGGTGAGATTTTTCT------GTGTGCTTTTCCCAGCTGCTT-AATCTGAGGTACTGGGAGCTGGAGTCTCACAGGGACTAATTAAAGAAAATTCTCAGTCAAGCAGT----GGGACCTAAATAGACCAGGCAAGTTAGTGGGTTGTGAAGGAACTA---AGCTAACACAGGACGCATGCTAGGAGATGAAA----CACTGTCCACTTGACCATTTCT--TATGTATTAGGGGAGGGGGTCCTTAATCATAGCAGCTCAGAAACTACAAACACAAACTTCAGAGAAAATGTGAGAACGGCAATCGGGACTTGACAACTGGCTACTGGCTCCTATGACCTTCTCCAGGGACTTGGGCATCAGTCTGTTTCATTTTGAGTACATCAAGGCTCC a score=76984 s mm7.chr9_random 3956513 1335 + 9745104 AATTAAATGTAGAAGTCTATGCCTCAA------AGACCCACT--AAGTTATAAAA-------CAATAATTGTGGTAGGCCAACAATTGCTTTAACCTTTATTAAGCATTGTCTTTTATTTATTCATAGGCTCTTGCAGGATGGATTTTCAAGGGTCAGTTCCGACCTATAGCTATGACATCGATTATGGTATGTCAGCACCCTGCCAAAAAATCAATGTGAAACAAATTGCGGCTCAGCTCCTGCCCCCACTCTACTCCCTGGTATTCATCTTTGGTTTTGTGGGTAACATGATGGTCTTCCTCATCTTGATAAGCTGCAAAAAGCTGAAGAGCGTGACTGATATCTACCTGCTCAACCTGGCCATCTCTGACCTGCTCTTCCTGCTCACACTACCATTCTGGGCTCACTATGCTGCAAATGAGTGGGTCTTTGGGAACATAATGTGTAAAGTATTCACAGGGCTCTATCACATTGGTTATTTTGGTGGAATCTTCTTCATTATCCTCCTGACAATTGATAGGTACTTGGCTATTGTCCATGCTGTGTTTGCTTTAAAAGTCAGAACGGTCAACTTTGGGGTGATAACAAGTGTAGTCACTTGGGCGGTGGCTGTGTTTGCCTCTCTCCCAGAAATAATCTTTACCAGATCTCAGAAAGAAGGTTTTCATTATACATGCAGTCCTCATTTTCCACACACTCAGTATCATTTCTGGAAGAGTTTCCAAACATTAAAGATGGTCATCTTGAGCCTGATCCTGCCTCTACTTGTCATGGTCATCTGCTACTCAGGAATTCTCCACACCCTGTTTCGCTGTAGGAATGAGAAGAAGAGGCACAGGGCTGTGAGGCTCATCTTTGCCATCATGATTGTCTACTTTCTCTTCTGGACTCCCTACAACATTGTCCTCCTCCTGACCACCTTCCAGGAATTCTTTGGACTGAATAACTGCAGTAGTTCTAATAGACTAGACCAGGCCATGCAGGCAACAGAGACTCTTGGAATGACACACTGCTGCCTAAACCCTGTCATCTATGCCTTTGTTGGAGAGAAGTTCCGGAGTTATCTCTCAGTGTTCTTCCGAAAACACATGGTCAAACGCTTTTGCAAACGGTGTTCAATTTTCCAGCAAGACAATCCTGATCGTGCAAGCTCAGTCTATACCCGATCCACAGGAGAACATGAAGTTTCTACTGGTTTATGACCTGGTTGACTTTTGTGTATCACGTAGTTTTTCTATGCAGCTTGGGAGTAGGAATGGTTCTTTTAAAAAAAGAAATTAGTATCATAGAGGGCCCAAGA-TACATGCATCTTTTTGATATTTATTTTTAGATAGATTGGGTCTTTTAA s bosTau2.scaffold4369 45527 1321 - 66790 AGTTAAATGTAGAAATCTATGTATCAATTTTTAAAACCTACTTTAGTATGTAAAATGGTTTGCATTCACGATGGACTGCTAAGGACATTCTAGGACTTTATAAAAGAG---CTTTTCTTTATTTACAGAGTCAAGCAAAATGGATTATCAAACATCAACTCC--CCT----CTATGACATTGATTATGGGATGTCAGAGCCATGCCAAAAACTCAACGTGAGGCAAATTGCAGCCCGCCTCTTGCCCCCACTCTACTCGCTGGTATTCATCTTTGGTTTTGTGGGTAACATGCTGGTTGTCCTCATCCTGATAAACTGCAAAAAGCTGAAGAGCATGACTGACATCTATCTGCTCAACTTGGCCATCTCTGACCTACTTTTCATCATCACCATCCCATTCTGGGCTCACTATGCTGCAGACCAGTGGGTCTTTGGAAATACAATGTGCCAGTTATTCACAGGGTTCTATTTCATTGGTTATTTTGGTGGAATCTTCTTCATCATCCTCTTGACAATCGATAGGTACCTGGCTATCGTCCATGCTGTGTTTGCTTTAAAAGCCAGAACAGTCACCTTTGGGGCGGCGACAAGTGTGGTCACCTGGGTGGTGGCTGTGTTTGCCTCTCTCCCAGGAATTATCTTTACCAAATCCCAAAAAGAAGGCTCTCGTCATACATGCAGCCCACATTTCCCATCCAGTCAGTATCATTTCTGGAAGAATTTCCAAACTTTAAAGATAGTCATCTTGGGGCTGGTGCTGCCACTGCTTGTCATGATCGTCTGCTATTCGGGAATCATAAAAACCCTGCTCCGGTGTCGCAACGAGAAGAAGAAGCACAAGGCTGTGAGGCTCATCTTCGTGATCATGATTGTCTACTTTCTCTTCTGGGCTCCCTACAACATCGTCCTTCTCCTGAGCACCTTCCAGGAATTCTTTGGCTTGAATAACTGCAGTGGCTCTAACAGGCTGGACCAAGCCATGCAGGTGACAGAGACCCTGGGGATGACGCACTGCTGCATCAACCCCATCATCTACGCCTTCGTGGGGGAGAAGTTCCGAAACTATCTCTTACGGTTCTTCCGAAAGTACTTCGCCAGCCGCTTCTGCAAAGGCTGTCCAGTCTTCCAGGGAGAGGCTCCAGAGCGAGTAAGCTCCGTTTATACACGATCCACAGGAGAACAGGAAATCTCTGTTGGCTTGTGATCTG-----------------ACTCAGTTTATATCTGCAAACTGTGGG--GGAGTAGTTCTTTT-CAAGAGGAAATTACTGTCAACAAGGATTTAAGACTTCATCCGTCAGTTTGGCA-TCAGTTCTAAATATATTAGATATTTCAA a score=17834 s mm7.chr9_random 3958120 1515 + 9745104 AGAGTCAGCAGAACTTGGGGTAAATCGGAGTTAGAGGTGCATA---------------AGAACCCCTAGGCTT-AGTTAGG--TTGAAATACCCATTGAGGAAACAGCAAATACAAAGGAAGAATAA---------------AGAGTTTAGCCGGGAAGGTAG--TCTCATTTTACAGCCGGAATATAATGTTA----------TCTCAGGCTA---GCATTT---TGTTCCTGCCTTCAGACCTAAATCCTACCACACCGG-------------------------GACTGTGAAACACCTGGATTATGAAT-CATGAGCCTGAGGTCTAGGAATAATAATAA--CGTTTGTGATTTTAGATGAGGGCTGTTTCCATAGTTTG----AAGCCAGAACTTTATCATC-TTGAG--CAGAAGCTCC-AAGAGATGAGGAAAGAGCACCAATTTTTCTCTAATTTACTTAGCAGTCATCATCTC--TGGAAGA--------TTCATTTTAGAAACAAGTTGTTGTGCCCCTCAGAAGCCATGAGAGTATAACG---ACTGCTCTCTGTGTTCCAGGCTGAGTATGAGGACTTCAGTCACACTTTCCAGATGGCTTCTCCACACAAAC--------AATGCTAAG----TTTGGCCATTTCAGAGGTTTAGGATTTTTTGTTGTTTTTGCAGTTGA----------------------------------TATTTTGAATTTTAGAGCAGTTGAGATCTTCCTAGTGAAGGCTAGAGGAGGAAAGA--AAGGGGTTAGAATCTCTCAGGAGATTAAAGTTTCTGCCTAACAAGAGGTGTTACTGGTTTTTCTCAAGCTCCGA-TTGTGAAACCAGAGGCCTGGGACTGTCAGCAGGAAGTGA---GCATTTGCTTTTTTCTTCCTTGTGATCCACATTCCTCCcccactctgttgctcagactg-gcgtcaagctcacgatcctcctgcttacatctcaagttctgagatt---acaagtatatgtgaacatatcca---------gcGGTTATTTTAT-TCATTA-GCATATAGAAAGTTATACGTTCTTTGAAGATAA---TGAGTCTTATAAAAAGTGCTTTGTAAAAAAA---ATTGCATT-TTATACTTTCAATCAAGTGTACATTTAGTGAGTAGTACGTAAAATTATGAGAGTATTTTGTAAGTAGTTGTTTTGGAGAACGCCCCCAATAATACTTGTTTAAATATAGCGTTCTTGGATTAAGTGGGTGGTGGTGATGATAATATTTCCTTGAAAGTATTTTTAGCCGTTAACTTTCTTCCTTAAACAATTTTTCATAATAATTTGTTCTTAAAGATGTTATGTCCAAGCATGCAGTTTCGGAGCAGTGTTGCTTTGAAAGAGTGTAAATTTTAAATTGTGCTTACT-CTCAATCAAAAGAGTTTTAACATATTT------ACGAATTTATTTCAGAAGTCAAGAATCTGGTTG-------------------AAAATAAAGATATGCAACTT-----------TATGGTCTGGTATTTGAG---TGGGAGTCAGAGAGGG-----TGAGGCctttctctctctctctctctctctctctctctctctctctcAAGTGTGTTAATAATTTCAGTAATGGAAATTCTATAACACTGGGATTTCTGTGCACATGTTTCTTGTCCAGAGAGAGGATAGATCCTCCAAGGAGAG s bosTau2.scaffold4369 47629 1641 - 66790 agagtcagcagaatttggggtggatttgacttggcagtgaagggcagagaggaatcagagactccctagatttgaggcaagcatcagaactgccctaaaagagacatcaagcatgggaggagaaggaggtttaggtcaaaacaggggttggtggaagagaaagggtccagttttgTAAGCTGAACACCACCCTAGGCAGACAGACCCTGGGCTGTCTGCCGTTGACTGCTCCAGCCACCAGAGC--AGTCCTTCCATCCTGGCTCAAACCATGAGGCATCCCCAGGTGGCTCTGAAATACTAGATTTACAAATGCACGAGTCTGAGGTCCAGAAACACTTCCAGGTCAGATATGACATTTGGGTGGTACTGATTACATAGTTAACAAAAATCCAAAGCTTTATAAGCACTGAGTACAGAGGCCCGGAAGAGCTGAGGGAAG--------------CCTAAATGACT--GCTATCAATAGATAAAGGGAAGAAGGACACACTCATTT-GGAAACAGGTCGCTTCAAGCTTTTTAAACCAC-AGAATACACAATTTACCAACCTCTGTGCTTCAACCTGAATGTGGGGGCTAGAGATACACATTCCAGATG-CATTTCTGAACAAACCTTATCCAAACACTAAGAGACTTC-----TTTCAAAGGA--AGAACTGTGTGGGATTTTTGCAGTTTGCTAGTTATATTATTATTTTGTATATGCCTAAGACTGTTTTGAGTCCAGGGGTAGCTAAGACCACCACTGTAAAGATTAGGTGGGAAAACACAAAGGTATGAGAACCTCTCAAGAGATTAAGATGTCAG---AAGAAGAGGTACTACTGATTTTTCTCCAGCTCTAAAGTGTGAAACTTGAGGGTTGTGGCTGTCAATAGGAAGTGACTGGAAGGGTCTTTTGTCTTGCTCTTAAA--------------------GTTGTTGAGAGTATACACGTGGCATATGAGCCTCGTCTCTGGGTC---AGTTCAAACATTCTGACATatatatatatacacacacacacacatatacatatatatGACATTATTATGTATATAGACAGTTACAAGTTGCTTGAAAGAAAATATGCATCTAATAAAAA---CTCTAAAAAATAATTGACTGTATTCTTGTTCTTTCAGCCAA-TGTACATTTAGAATACTGCACATAAAATTGTGAGAGAACTTTTTAAGTAGCTTATTTGGAAAATTTC-------ACACACATACAAACACA---------------------CATATTGAGGATTACTTTTTCT---AATTGTTTTTTAAAGTTGACCCTCTCACTGGGTAAAATTGCCAGAATAATTTGTTTTTAAAGACGCTATCTCTCAGAGTGGAGATCCTGAGCAAC-TGACCCTGAAAACTTTTAAATTTCAAACTTAATTCTCTACTCAAGCAAAAGAA--TTGACATGATTCTTCAGAGAAAATCAATGTGTGATTCAACACGTTAGCTGTCTAGGTTGGACAATGGAAAAAACACAATGTTGTAACTTGGTCATTCATCTGTAATCTTGTGTTGCAGACACATGATACAGAAAAAGGTCATCGGTGGCTATAAAGATTGCTTTTGTTTCATTTGACAATCTCTCCCCAAAACCTGGCTGCCATTGCAGTGATGGCAACGGTGT-TCACATAGACTTCTGTGCACGTGCCTCCTTCCGTCAAGGAGGACAGGTGCTCTAGGTAGAG a score=2825 s mm7.chr9_random 3959754 181 + 9745104 CTCTGAGTGGTTTAGTAACTTCTCACCAGATTCAAAGGGTTGCTTTTCATCTCTTAGATTTGAAGGTAGAAAGTGTTAAAGAAGAGTGGAAGGCAGCTGGGCTT-----AGGAGAAAGGAGTCAGGGGAAGGGAGCCCTCTATCTGCTATGATAAAGCCAGCTTTTGTGGGGATGAGGGAAAGtgt s bosTau2.scaffold4369 49365 182 - 66790 CTGTGACAAGGACAGCTTCTCCCTAACAATCCTGAAGGACTGCCTTCCATCTCACAGGGCACAAGGAGGCATGAACTGAGGTCAGGTGGGAGG-GGCTGGGGTTAAAGCAGAGGGAAGGACCAGGGAGAAAGGAGGCCTCC-CCTG-TAAGATGAAGGTGGC-TTCATAGGGAGTTTGGAAGATGT a score=4230 s mm7.chr9_random 3960438 160 + 9745104 ACTATGTATATATTT---------------TCTTTCATAATTTA--AAAAATACTTT----AATGTTCCATTTGGCTCCATATTGTTACTTTTTCGATGAATTATAATTTCTGTGTTATTATAATTCTGTAATACCTCAAGAGCTTAT-TTTGTTTTAAAAATAGGGGAttttgtttgtcta s bosTau2.scaffold4369 50356 178 - 66790 ATTATGTATATGTCTATGCCACACTTTTCATTTTCCTTAATTTATTGTAAGCATTTTTGTAACTCTTATATTTGGCTCCATACTGTTACTACTTTGAGAA----TAAGTTCTGTGTCACTTTGATTCTGTCATGCTTCAGCAACTTATGTTTGTCTCTTATAAAGTGGCAACTATTTTTTTA a score=4747 s mm7.chr9_random 3960828 217 + 9745104 CTATACTGCCCTCCAGTGGCCAACTAGCAAA-TAACAAAGATGTTTGGCAACCAGCATGGACCACATCATACAAATAAGGAGTATGGCTTCACTGAATTTTTTACTGTTTGTGTCT-TTAATTCCA------GTGTGGAC-AGAGGCATATCCAGAGCAGCTCAGGGTATTTGACACACAGCTCTTTCTCACTGCTTCTGAAGAACAGGAAGAGCCCCAGTTGAGG s bosTau2.scaffold4369 50590 219 - 66790 CTGTACTGCCCTCCTGTGGTCACTTAGCAAATTAACAAGTGTGGCCAGCAGCCATCCTTGATCAGAG-AGATGCAGACGGGGCATTTTTATACTCAGCTATTTCATGTCTGTCTCTGCTGGCACCACAGCTGTTGTGTACAAGAATTATCACCACAACAGGTCGGGGTGGATGATGCAC------TACTCGTTATTTGTGAAGAACAAGTGGAGCATCAGTGGAGG a score=8050 s mm7.chr9_random 3962464 435 + 9745104 ATTTTTCTACTTACATTTATTTCCA-TTATCTTAGATTACTCAAAAAATATCCTATAAAGAAGTTATAATGTTTTCTCAATATATAATCAAATCAATCATCTGTTAATGGGACAGCTCAGTCTTTCCTGCATGGTAAAAACCAAACTCTGG--GATGAGAAGGTAAGAACTTAAAATTCATATTG-----------GCCTGAATATCATGTTGAAGCAGTGGGAGCTTA-GGAAGTAATCTGAGTTCTTATAGCCTTTTGTTCCTTT-TGGTAATTTGAAG-ACTACTAATATCAGCAGACAGGGATGTTTTGGATAGAAAATATCTATACTAG-GCTGCACAATAGAATTTTCC-TAACATC----ATGCTTTCTTTCTATATCTTCTAATATGGTAGCATATTACATGAATGTAGAATGTGGCTAATGTGGGttatatatta--tttttaattttaat s bosTau2.scaffold4369 51683 446 - 66790 ATTGCTCTACTTATGTTTACTACCACTTAGCTAATATTCTTCAAAAA-TCCCTTTTAAGAAAATTAAAACATTTTC-CAACATATGATCAAATCAGGGCTCTGTTCACTGGTTAACTCTCTCCTTTGTGCAGGGTAcaaagaagagcctggtagatgaaagaataggtatttaaaaatcagactgacttcagctcagcctcaatactatt--------atgggagtttgcataagtgacttaaagactctggatgtcagattcctttcctataatttggtgtactattaatatccacTGGGAATTATGCT---GGAATATAGTGTCTAGACcagcactgtgcagtagcattttctgtaatgatggaaatgctctgtatttgcattgttcaaaacagtggc-caccagaccagtgcaagatgtggctaatgcgaatgtggaactaggctttttatttcaat a score=5957 s mm7.chr9_random 4120390 385 + 9745104 tacatcatcaccagcccT--GGAACACAACTTTCTGGAATAAAGC---AAAAGCTAATGGCTTACAGAAGCGAACATTCT--------CTGTTCTAGACCTCATTGG-------TCAACAGATGCACCTTATACTAGGATTCAAAACCAAACCAAACAAGTAAAATCCCTTACTCGTCTATCCCAACTTCCCTTTTATTTAAGTTAACCTTTGGGAAGACCCAAGTCCTTCCCAAATGAATTCAGAAGAAGGCC-CACAGCATGCTAGACCTCGAAAAACAGTTTTCAATTTAGGTTGATGGCTTCTAAGGTCTATAAACA--CGCTG-TAAATGTGGAAGGGAGTCAGGCTCCACCAATCGGGGTCCATCGGCAGAGA--GAAGCTTGCTTATAGAGAAGTGTGCTCAGA s bosTau2.chr10 35403042 364 - 70001009 TATCTAATCTCTAGTCTTTTGAAACCCAACTTTCCAAAAGAAAACTTACCAACCTAAT---TTGTAGAAAT-AGTATTTTTACCCCAGCCACTCTCTATCCCATTGGCAACTAATCAACAAAAATTCTCAATATCATGATTTTTAAT------AAACAAGTAAAACCTTTCATCCTTTGACACCTGCCTCC-TCTTATTTAAGCTATC-------------------------------ATGCCGCAGAAAGTTGAACAGGATGTGAGATATC-AAAAATGGCTCTGCATTTAGACTGATGGCTTCTAATGTTGCCAAACAGATGCTGCTAAGTGTGGAAAGATGT---GCTTGATTGTTTGGGATCCACCTGCAGAGACATAAGCTTATTTCCAAAGA-GTATACTCAGA a score=9986 s mm7.chr9_random 4120813 376 + 9745104 TAAATGATAAAATTGATGAAT----GTAACTTTTTAAAACTGTCACA-GGGAGAAGGGATTGAGG---GTGAAGGA-AAATTGACCTCTGTAATCTTTCAATATTCCACATATAATTTGCCAAAGGACTTGGGTCTTCCCAAAGGTTAGCAATGCATAGGCTA--------------------------------------------------CCATTTTTAGTGACATTTATTTATCTCTGTCATTAAATAAATAACAACTTAGAAG--------AGATGATTTTACCCCACAGTTTAAATTCCTTAGCAATTGTCTCATTTTCTTCTGTAGATCCCTAAGGAACTCCTGGAAA----GCGGAGCCAGTGCATTTCCTAGGTTCGTCAGATGGGGGCGAACTTGGTTTGTATCTAC--TGGCATT---------------------GCTCTCTTGGGAACAGTAAATAG s bosTau2.chr10 35403413 459 - 70001009 TAAGAGATATGGTTAATGAATAAAAGCAACTTTCTAATAATGTCACATGGGAGAAGGAGATAAGAAGAGTAAGGGGGAAAAAGACCCCCACAGTCTCTTAATATTCCAAATATAATT-GCCATCTGACTCAGATCTTCTCAAAGGTTATTG-TTTATAGGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTTTTAGTGGCAT------ATCTTTGTCATTAACAAAACAATAATTTGGAGGGACAGCCTAAAAGATTTTACTACAGAGTTTAAGTTGCTTGGTTATTGTCTTAGTTTCTTTCATAGATGCATAGGGATCTCCTGGGAATGAAGTGGAACAAACATATTTCCTAGGGTTGGGAGTTCAAGG---GTCTGGTTTGCATCTACAGTGTCATTCTCTTAAGGCAGGGGTTCTCAACCCTTTTGGCACCAGGGACTGG a score=29460 s mm7.chr9_random 4121231 1185 + 9745104 CTCATTCTTGTTCAGCCCCTTATT---------GCTTCAGACAAGCCAGAGGACACTTGTGGCTTATAGTTTTCTCACCTGTA-CAATGGGGTTTCTGATGCTGAGTGGGAAGAGCTATTGTGATA--TAGCTTACCGGCCTGTAATCAGCACC------------------------------------CATAAAAACTTTTGCCCCATTTCT-----GGAGAACTCTGTGGCTGGCTATCACCGGTCCTATGTTTGCTGCAGCCTT--TAGTTTGATCCAGGCTGCCACGGTGAGTCTTCCG---CACCAGCCTCAGCTCCATGAAAGTGGA--AACGCTCGCTGAAGCATCCATCCAGTGCCCACCGAGGGTCTTCATTCCCTATCAGACCT----CTTTCTCA-GAGAGCCTAGAGCTTTCTTTA------------CTGTTTCACTATCTCTCAGTAGACATCAGTAGTCAAGC---------TGGACCATGGAGAGAACAGAGAAGTTT-AAAAACAACTTTCCTATTTAAAAAAAA-AAAAGTAAAATGCATTTGCTCTTTGCAAT-TCTCTTGCAAATCTCAGGATTAAAATAGCAAGTTCT----ACCT----GGAGATTCTTGAGAAAGTTGCCAAGGTGTGCCCGTCTGCATTTAAAGACTGACCTCTTATTGTCTGTAAATGAAAACATCATCCCAGAG-TCTCTGGGGATTAAGGCAGCCTTTTTAGAATTTTCTGCAAGTTTATCTCTCATTTACCCTCCAGGCAAGAGTGAAATAATAGAAGATGTCCAATATTTTGCTTCTTCCTGTAAAAGTAAATCAAAACCGTGGGAATGCTTCCTCCTAATTTAATATACTGCTGTCTCCTCAAATCTATCTCCGATTGTATTCAATTAACCCTCTGATTGCTACCACAGACAGCCATGATGAGGTCAAAGAATAAGGGAGAATTTTCTTGTTAGAATAACTGCTGGCGTGAGTCCGGAGCCCAGTAATGGTGTAACATGGCCATCTATCCAGAG-CTGGAGCACCGCAGTTCCTATGTCAGGTGACT--CTCTCTCCTGCCCTTGT-CCTGGCTGCCTGC--------------------AGGCTAGCATAGCTTTGCTGAGATGTGGG-GTATCACTGAT-------TACACACTCTTTTGTCACCAATAACATATACTTTTACTGTAA-------------------------TTTGGGCTTTACATTTGTCACGTTTCTTGTCCTC-CAGTTCCCCATGGAGA--TCAGTGTACAACGTTTTCCTGACATCCCTTGAACAAT---GGTTTTGGCTAGAGGGA s bosTau2.chr10 35404077 1320 - 70001009 tccgtttctgttttgctgcttgctagctgtgtagttttagacaagccatacgctgtttttgaattttagttttcacatctgaaacaatgtggtcaagaatactaacctggaagggctgttgtgaggactaactgtgaGACTTTGTATCAGCACCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTCAGCGCTTAGAATGGCTGGTTCCTTTTCTTCTGCAGAGACCCCTGAGACGGGAC-CCACGATCCCCACAAAGGCTATGGCCCTGTTCTCTTTTTACAAGCTGCCTGGGTAAGTGTTCCAGGATTCTGACCT----TCCATGGAAATCGATGAGTGCTTGCTCAAAGGCCCCTGATGTGCT-GCAGATGG----CATTACCTGTTAGAGACAGAGCTTTCTCAAGAGGAGCTTGAATTTCCTTTATTTGGAGAAATGCTATTTCACAGTCCCTCAGTAGATGTCAGCAGTACAGCAAACATCCTTATGCCACAGCGGAAGCAGGTTAGTTTTCAAAACAACTTTCCTGATTAAAAAAATTAAAAAACCAATGCCC---CTTTTTGCAATGCCTTTCAGAAGCCCCAGAAACAGAGAGGTGAGATCTTTTGGCCTCAAAGTAGATCCCTGAAAGATTTACCAAGG---GTACATTTGCATTTTAAAGACAACTTTTCATTCT-TGTTAAAGAAAACATCATCCCAGAGATGGGTAGGGATTATAGCAACCTTTTTAGAATTTTCTGCAAGTTTATCCAGCATTTACCCTCCAGGCAAGAGTGAAATAATAGAAGATGTCCAATATTTTGCTTCTTCCTGTGAA-GTAAATCAAAACCGTGGGAATGTTTTCCCCTAATTTAATTTACTGCTGTCTCCTCGAATTTATCTTTCATTGTATTCAATTAACCCTCTGATTGCGACCACAGACAACGACAATGAGGTCAAAGAATAAGAG----TTTTCAGGAAAAAAGGGATGATTG---GAGTTTGTGGCCAAGTATTATTTGGATGTGGATATCAACCCAGGGTTTTGCTTATGACATTTAGTCTGTAAACTGACTTGCCCTCCCCCTCCCTTCTGCACGCCTGCCTACCCCACCCCCAGGTGTGACTTGAGCTGTGTCAGTACTGTGAAGAGGTGGGAATGTCTCTGTTACTTACATGCATGCCCCTTTTTCCTTCACAGTACATAATTCTGCTGCCAAACTTGACTTCACACTAGGCTGGTTCTTGGAGTATATGTTTCCCTTGTTTC-TGTCCTCACAGCTATCTCGTGAGGCTTCGATCTGCAGTGGTTTCCTGCCATTCCCATCAGAGTCTATGTTTTGGTTGGTGGGA a score=8367 s mm7.chr9_random 4123210 571 + 9745104 ATGCTGCATT-GAGTCCAATGTGCCTTGATGACCAAGTTCTTCCATGTG---CCCTTAAA------------AGT-TAGCCCTCTTGTCTTCTCTCAGTCCTAGAG----CTGGTAAGGATGCTTCTCCAGGGGGTCCTGTCTAGCAAAGAGGAGAGCCTGAATTCCTCAGAGACCCCATGGGCTCACAGT------GTTCTGTCTTTTTCTACAGCAGTCAGAAGTAAGAAGATTTCTTGGGGCAAGGC-CGTGGTGCCGGTGGGACTCTGA--GCAATTCAT-GGAGCCCAGGGGTTGGGGTGGGCAGGGATGGG---------------GTCAGGGAGGACTGGAGTCCTCTCTGGTTGTCAGGCATAGTTACTTGAATCACTCTTTTAAGGGAATGCTAGATGAGTTGCCTGTTTAAGCTGACTCAAATTTCTATAGCCTTTTGGGTAAGAAACCAAAAGACTATGgttttgtttttttgttttttgtttgtttgtttgttgtgttttgttttgttttgttttgttttCATCACCAGAATTAAGATTAAGCAAATCCAGAGCTTTCCTTCTGCTTTT-----AAAATAGAACAGAGAATATAAGACGGTTTAAgaaga s bosTau2.chr10 35407058 538 - 70001009 atattgcatttaagtattatatgtcttgatgactgactttgtcttggtgtttcccttaaattttgcatgaggagtatatctcacttgccttcccctaACTGTGGGTGGTCCTGGGAGGACAACTTT----GGTGCTCATTTACAGCAGAGAAGGCCCCTGGGGTTTCTCAGAGGCCCAGTGGGTTCCCAGATGGGCAGTGTTGCCTCACTCCACTGTCTTCAGAAGGAAGTAGGCTTCCTAGAAGAAGGAGAGTGGTGATGGGAGGG-TCTGAATGAAATTCACCAGAGCCTTGGAA----GGTGAGCTGGACCTGGAGCCTCAGCATGCAAGCCAGGGAGAGCAGA------CTCGGGCTGT-------------TTGGATTACTGATGGAAGGAAATGCTAGATTTCTAGTATGTTTCAGTTGATTTGAACTCCTACAGCCTTTTTGATTAGAAACCAAAA----ACAGT-------------------------------CTGTATT------------------TCTTCATTTCTAGGATTAAAATTAAGCAAAAACAGGACTTTTTTTTTTTTTTTTTTGGTAAGTGGAGTAGAAAAC---AGACAGTGCAAAAAAA a score=8021 s mm7.chr9_random 4123937 1215 + 9745104 GAAGGAGGTG-GGGGCAGAGGGCTGGTCCAGTCCAGTGTTATGCAGTGACCAGCCAGCTATTGTTCCTC--GGCCC--AGTCAAGATTGACAGTAACAACAGCAAGAAGAAAA--CCAAGTCAGCACACGGCAGGAGATAGT-GGCCTCAGACATCACACTGCAAGCAGTGGGGCCGGCGCATCCTCTATTCTCTTACTCCTTCGGGTCAAGAactgcagatacgttgggcacagtgacgcagacctttaatccagaactcgggaggcagaggccattggttatctgtgagttttaggtgagcctggcttacatagtaaaatagcaagttccaggccagccagggctacacagtaagactctattgatgagctgcttgaatctcctgccaccttacctcctttatcacgatagacttatccttgaactgggagctagatggaatagtccttccttccttaggttgcttttgtcagaatattttatcccagcaacaggaaaagaaactaagataGATCTAGAGCAGAAGACCTGATTCACGTCCCAGCCTTGTCTTCCCATTATTTGTGACATCTTGAGCAAGTTTGTAAGCTCACTAGAGATTCAT-------CTGCCGGTTAGGGAGACGAGACT-----ATGCTCACCTCTGAGG---CCATGATACTTGACCGGATTATTCTTGGTGAAGGTGAGGATGTCTCAAACAAAGTTCAAAG-CTCCAGGACTGGAATGAAGGGTGTGGCAGTTGACGTCAGTCATAGACTTATTCTTTGCTCCTTTCTCATAGCCTAGA--ACTTCCCTTTAGCTTGCTGGCCTAATT----AGTCAATTCAGTGT--CTATCACAGAGTCCACTATGTGCAAGGTTCTGTGCCATGA---AGCTCAAGTGTCTTCCTGCTATTGGGCTA-TCGAAGACAGGGCAAATACTGAGAAAACAATAAAGGTGATA-AAAGGTACA-------GAGGGA-GCATGCGGGGAGTTGC-GGTCCTCCT-GCAGGATGAGTGCCAGAGCACAAGTGTTCCAACAATGCTGTGTGGAAGTAGC---------------AAGAGAGGCTGTCCATT--CAGAGTGGGTTGGG--AGTGGAAAGGCATTTCCTCACTGGCCAGCAAAGGCTGGAC--CTTG---CCCACTGTGCTGTGCACTGGGAGAGATGAGCTGCTTCTCTGGCCGGGCTGTGGGTGAATGAAAGGAGCAGTTGACAAAGGATGAGGAA----GTTGGGTAGGACCTGG------TGGAACCCGATGTGGGGG s bosTau2.chr10 35407616 1021 - 70001009 GGGGGAAGTGTGAGACAGAGGGCTAATCCTGTCCAGAGTCGGACAATTAC---CTAGCTGGTGTGCTTCCTGGCCCAGAGCCAAGACTGGCAGTGCCAATGGCAGAAAAGAAAGTCTTAGTCAGACCA-------AGATGCTGGGGCCAAGAGACCCCA-------CAGTGAGGGC----CACCTTCTG--CCCTTGAGCCTTCCTGCTAG----------------------------------CTTGAATTGGGAA--------------------------CTGTGA----------------------AAAGTATACTTGTAGTTT-------------------------------------------------------------------TTCTTTTTCACTAAAAAGGTAACTGTGGAC----------------------------CCAAATATTATTTATgcaacacggtttaat----gaaacagggtgagattttaattt-----------agaagacctgattgcaatcccagtcctatcctgtc--cagttgtgggacgttgggcaaatcactgagccccctagagaattattcccagcctgtaaattagggagaatagaatttatcctgctggCCCTAAAGATATTTATGAGAACCGCCTGACCTAAACTTGGTCAAAGTGCTG-TGT-------AAGGTGTGAAGTCTCCACAAATAGAAGGCATG--ATGGTAGTT-------GTGATTGTTGTGTTATGTACTCCCTTCTCACAGTTTATACTCCTACTATTTAGCTTGCTCACCTAATTAATAAGTTAATTCAATATACATATCTTAGAGCCTGCCACGTACAAGGCTCCATCCTGTGAAGCAGCTAAAGCATTTCCCCACCCAGGGTCTAGTAGGAGACAGGAAAGATATACAGAGAAGTATAAGGCAGATAGAAATGAACACTTATGTGAGAGAGGCAAGTAGGGAGGAGCTGGTGTTCCTGGCCTGGAGAATCCCAGAG---------------GATCGTGTGAGGAGGTAACACAGGGATGAGGAATAAGAAAGGTTGGACTTCTGCAGAGTGAGCTGGGGCAATGGGAAGGCA---CTGTACTGG------AAGGCTGGGCAGCTAGGAATCTGCTGGACTGTTTA-TAGGCAAAATGGACTG----------------GGGGGTATAGGAAGGGAATAGTGGGCAAAGTTTGCAGAAATGTGTAGGGGACAAGTTGGTGGGGATGGGACCTGATCTAGGGG a score=4642 s mm7.chr9_random 4125440 351 + 9745104 ACTCGGAACCTGTTTTCTTAT------------------------CCCATAGGATCACTGTGAAAAGCACATGA---ACTGTGTGTGTTGTATCTGGCACACAGGAGGTGTGCAGTCAGTGGCAGCCGCTACTTAT------------TACAATGACTGCTTCAAGCTTTCCTGTGCACTTGCTCTGAGAATGAGGGGTCAGATCCTTGTAATTCTGAAGTGGTTTTTCA---ATAAGAGGAGGTCAGTAAAACACCGAAATGTTGACATGT------TTTGTGAAGGGACCAGGCAGAGAAACAACTG-GGGT----------AGCCCTTG--------------------TTAGCTGTATCCTCTCTGGAAATTCAAACCCTCAGGGACTTAGTTTCTTTTTCTGAAAGAATAGAAAGTTAaaaagaa s bosTau2.chr10 35410040 418 - 70001009 actctaaatctgttttcttacttgtagtatgaagctagtatttacctcatagtat---tgtgagaattaaataagacaatgtgtatacagtgataggcacatgggagccactcaatagatggGGATAATTATTTACATATGTGAGATGTATGATAGTTATGTCTGTATCATCTGT-----CATCCAAGGAAGAAGGAAGCAGAGACTTTTAGCACTGAAATAGGTTTTAAGATATGAGAAAAAATTAGTAAAACGTTGAAGTTTTGAAATGTCATCTTTTACTGTAGGG--CAGAAGAAGAAGCAATTGTGGGTTAGTTATCAGAGCCCTTGGAGTTCAGATATAAGAGTTATCAGCTGTTGGTTTTCAGGCAAGTAACACTCTGAGGGACTCAGTTTCCACACCCAAATAA--AAGAACTTAAAAATAA a score=21168 s mm7.chr9_random 4126869 502 + 9745104 CTCCTCCCTT---TCTCCCCACCCAG----------CACTTTCCTAGCCTGAAGGGTCTGACCTGGGCATATCAGTGCCAGTATCCATC---TTGTTCCCACAGATATCCATTAAGTGCAAACGTCTTTTCTTCGCCCTCTCCACTTACTCTGAACTT--AACCAAGTAAAGATCTTTCCTAAAGGGGGATCAGTTTTGTTTGGGCTAAGACGATTCGTGAAATGTATACATAGCTTGAACCTCCAGGAGGAAATATCAGCATGTTCCTAATACTACTCAAAATATATACTGTCACACAGATTTTCCAACTTGTAATAGAGTGTGTCAGTTTACTGAATTGCTGGGTGGCACATGGGATCACAT-----CTCCCCATGAATTCTTCTTACAGTATTTCAGTCAAGATAAATTATAATCAAAAACTGGTAGGTCATTTTTGGTTGTGAT--TCTAAATCAAAGCTAGCCTATGAAAAGATTTGAACACACACACACACGTCAATTGGTTTCTTTTTATTTTTAAgtgt s bosTau2.chr10 35410558 523 - 70001009 CCCCTCCATTGGCCCTCCCCTCCCCGATTCGGGGGCCTCTTCCATTGCCTGAAGGGCCTGACATGTGGATAACAGCATTAGTAATCATCCTCTTGTTCCCACAGATATC-ATTATGTAAAAAATTCTTTTCAGCACTCTCTCCACTTATTCTAAACTCTCCACCAAGGAAAGATCTTTCCTAAACCAGGATCAATTTTGTTTGGGTTCAGATGATTCTGGTAATATATACACAGTCTGATCCTCCAGGAGGAAATGTCAGCATGTTACTGATACTATTCAAAATATATACTGCCACATATATTTTTCAATTCATAATAGTCTATGTCAGTTGATTAAATTGCTGTGTGGCACATGGGATTGTATTTGCACTCCTTATGCATG-TTTTTATTATATTGTAGTCAGGATGAATTACGGTTGAAGATTTGTAGGTACTTTTTGTTCTTGATGATCTAGCTTTGATTTATCATCAAGATGGCTTTGGTTACATGATTAAAC--CAAATGTTGTCTCTTTTTTTATAGATAT a score=13903 s mm7.chr9_random 4129385 495 + 9745104 CTGATTTTCCTATAGGGCTTTGGTTTATGTTAAAACCACCCAGGGAAGCTGTTCTGCTCTCATGCTGTTTACACTTTGATGAAGGCTGTCAGGAGAACCTGTCCTTGGGTC-TGTGGTCAGAGGAGGAGAGGTCAGGCACAGGGAGG-CTTTGGGGCTGGATGTGAGAGTTCAAGTGGCCTGGGTCAAG--------TGTTGTGGCTCAGTTGG-TTAATGGAATGCACACCCCAGTACTCAGCAG-------GTCACAGCCAGATCCCAGATC--TAGAGAGGTCAAAGACAAGGAA--------------------------CACACACAGTTCAAGCCACCTCTGGTGATCCGGAAGGCCTCAGAGACGTGGAAGGACCAAGGATAAAGCAGGTATCAGAGGGCATTAACAACACCCAGAAGCCTTGGCTTTCATCCCCATCGAGAGAGAACAGAATGTCTCGACTCTCTCTGATCATCCTGATGTTCTTTT-------------GCTTGTGAGGCAAAAATTCCATCCCAGGACATTTAGCATACTCCTG s bosTau2.chr10 35413498 551 - 70001009 CTGGTTTTCCCAAAGGGCTTTGATGTACACCCACGCTATCCATGGAACTGGCTTTGCTCTTATTTGATCTACATGTTGACAAAGTCTGTTAGGAGGACCCACCCTTGAATTGCGTGACAGGGCCTTGGGAATTCACGAACAGGGAGGACTTTGCAGCTGGACATGAAAGCTCAGGTGGTCTGGGTCAAAATCAAAGTTTATCTGGCTTGGTTGGCTTAATGGAGTGAAGATTCCATCCTTGAATAACCCAGTTACCACAGGCAGATTACAAATTCACAAAGAATTTAAATACAAGGAAATACACTTAACACTAAACAAATAAACTAGACATGTCCCAAGCTTTCTTGAATGATTCAGAAAGCCTTCACGATTCTGTGGGGTCA---ACATAATAGGCATCAGCGGGTATCAATGATACACAGACGTTTTGGCTCTTATCCTTCTCTAGGATGAACAGAGTGTCTGAATTCCTTCCGACCACCTTGCTGTTCTCTTCCATCTGGAAGCATCTCACGAAGAAAACATTCTATTTGGGGACtttcagtttatgtctg a score=17271 s mm7.chr9_random 4130412 1489 + 9745104 CCCTGTTGGACTGCTC--------TCTGTCCTGGGAAAGGG---TTCTGGTAAATTTTACACAGGAG--AGTT-----GAGATGAGTCAGTCAGTACACAGAATGCCT------AACACAGAGACAAGATCCCTTAGGAAACA--GTCCAGTCAGCATCCTGAAGTCTGGTTCCAACAAATTCTTGTCTCCTTCTCTTGCAC-AGAAGTGAGAATCCTGGGGGAGTACACAGACAGATCTCTTTCT------CAACCTTGAGTCTCCCAATCTGTAGTTTCACTTTAACCACTGCCCCCACAAAGTG---GCTCGCTCTTTGC--TACTTACCATGCATCTGCTTCTGATA--GTTTCAAGTCTGACTTTGTGCAGTTAGTTGGCTT--TTGGAGCAGCTGCCCTAGCCCGGGACTGGATGGGCATTGTTAGTTAGTACTACTGGCTTTGAGTGTGGGTACAGGGTCACAATG------TTACTGTAGCAATGCAGAGCTCACCCTCCCCAGTTCTTTTCCAGATTTCCCTACCTCTGAAAAGTGTTCCCAGCTTACTGC-TGGGAGTCCTTTCTTAGACAAA---CTCCTGGGTCAC-AATTTCTTCCTTGTCACTCACCAGAGCCCTTTCTAAGAGAACCAAGAAACCTC--------------------------AACGTAACTCTAGCTATCCATCTTTTGGTATTAT---GGGGTACCTTTTTCTTAAGAGCAAAGCCTAGGTATCCATAGAAAATACAGCCAACATAA---TTCTCCCCAGCATTAGTGATCTGAATGCCAGTTCAGTCACACTAACTGCTGCCTTCACCGGCTGCCTTCCTGTTCTC-ACTCCTCTATCTGCTCACAGGA-GTCTCCAGCCCCCTCCTAACCCTCT-CGGTGATCTCTGTGGC-TACAGAGAGAAGCTTGCCCTCCAACTACAACCAGCCTGTTGTCTGTGATCAGCAGGTGCTCCCATCAGGTGCTCCCATATCACCTCCCACATCCCTTACATA--ACCTG----TGCTAATGGCAATGCCAACCTCTGTTGTCTGGAGTAGAGTTTGCTCCCACAATCACCCCTCACTGAAGGTCATC----TGCTCA-----ACGGGAGGGAGATCT-TCCTCTGCTCTGTG-----TGGTCAGGTGGCCTCCAAAGAGGCTCTGCTTTCATTAG--GACTCTCCATGTTCTCTGGATCACAG--------TCCTTGACATTCTGACCT-----------------------AACTTCGGTAGAG-------TCCTTGAAGCAGATTTTCTAGGTCTTATTTTTCTCCTTTCTCACCAGACTACAGTTGTC-CCCTACTACGCCCCCCTCACACTCTCTACACAGG--TTGATTCTTATCCAGTCATAAGCAG---TTCTTGGCTCTTCAGTACC-CCATAGGCA----AAACCTCTGAATGGCTGCTCGTGTGACCCAGAGAATTCTACCTTGTCACGGAGAAAGGTTCTTTTCC----------TTTCTTGAGTGCAAATTTGAGAGGCA-ATAAGTAACTTTTATTTTTCTAATTTGCAAACCAAAAATCTAATAAAACGAACATTGTCTTCATTCTTGGAACCAAATAAAAGTCTTTTTCAGTTAATTATGttttt s bosTau2.chr10 35414399 1578 - 70001009 CCCTGGTTAACTTCTCACAAAGAGTCAGACCCGGCTGAGGGACTTTCATTTTAACTTCTCCTGGGAGCAAGTCAGCAAGGGCTGAGTCAG---GTGC----AACGCCCTCTCTACACACAGGGATGAGGTCTC-TAGCAAACACGATCCAGTCAGTGTCCTGGAGTCGGGTTCAAGC-------TGTAT-CTCCTCCTGTGCGAGTGAGGAGAACAAAGGGAGAGGG-ACAGAGGGAGTTCCTTTTGTTCTATAATCTTGTAACTCCAAGCATGTACTTCTGCTC---CCAGT-CCTCCGCTAAGTGCTTGTTCTGTATTTGCATTATTTGCAATACGGTTGTTCCTGATACTTTTTCAAGTTGGGC----CAAAGCTCATGGGTTTGGTAGGATCAGCTGCTCTAGCGCTAGACGAAGTGGGTGTCTTCGGTT----CTACTGTCCATG---GTCCGTGCAGGGCACCTGTGGTCTAACTACTTTAGAA----AATGTTCA--------AGTCCACCTTCA----TCTCTTCCTGGGAAGAGTACTCACAGTTTCTTGCTTTGGAGCCTTTTCTCAGGAGAATCCCCTCTGGATAGTGGGTTTCCTCCTTGTTATTCATTATGG-TCTTTCAAACTGAATTAAATCATTCTGTCTTTGGATTTTTGTTTGTTCAGGGAACTTTATTTTACCAAGCTATTCTCTGTACCTTTGTGGGGGTATTTTTCCCTCAAGAGTGAATTTGGGGCACCCTTGCAGCTCACATGTAATATAACCTCTCTCCCAGGCCTCACCAGTCTGGGTAAAAATTTAGTCACATTCA----TGTAAATAACTCTTGAGTTCCTGTTCCCTGCTCCCCTACATGCTCATAGGAGGGCTTCAGCCTCCTACAAAGCCTCTCCAAATATTTCTGCGACTTACAGAGAAA------CCCCCCACGGGCCACAAACCAAGGGTCTGTGTTTAG---------TCACCACGTGGCTCTTGCCCTGGTCCTCCCTCTGCTGCCTGCTAGCTGCTGCTGCTGGTGGCAATGCCAGCTTCTG-TGCCAAAAAGGGGCTCTGCTCC--CCAGCTGCCTTCACCAGCATTTGTCTGTGTGCTCAAGGCTACGGAGAGGACACCTCTCCCCTCCTCCATGCTCCATTTTCACCCGGGCCTCAGAGTGACCCTGCTTTTGCTAAATGGCACACCAT-TGCTCTTGACAACAGCTTCTTCCTTCTAGAGGCCCTAACTCTTTTCCCCGTCTGGAGTCCCGAGAGCCCTGGTAGGGAATGTGTCCCACAAGACAACCTTCCTGTTTCTTACTTTTCTCTTATACCCC----TTGCAGTCGGCAACAGACCACCCCTCCCCCAGCCTC---AGATGGGAATCGCCACTCATTCAGTCACATCCAGGTTTCCCTGCCTCACCAGTGCCTCCAGGGGCAAACCAAACCTTGGGATTCCTGCTTGGACCATGGAGAACATCCTGCTTTATATCAGTGAGAGACTCCCTTAAATGTAGAAAGGTTCTTGAGCTGAAGTTTAAGAAACAGGGAAATAACAT---TTTAATTGACTTGAAAACTAAAGATTTAATTTACTGAAGATTTCCTTTATTCTTAGAACTCACTAAAAGTC-CTTTCAGTTTACTGTATTCTT a score=5068 s mm7.chr9_random 4135342 294 + 9745104 GATTCCTAGATGTGTGCTTTGAATTGAGCTGCAG---------CCACGTCTCCCTGAAAAAGGTTCCCCGA---TGTTTGATTCTTCCGCGTGCAAAGGCTCCGTGTGCCAGAAGTGCCCCCATTCAACAGTTTCTAGAACAGTAGGTTTTG-TTGTGTGGGTCTGGATGGA-ACATGTTTCCTTCCTTTGAGGCTAAGTTTCTGGGGCCTTCTGGTAAATATTTAATAGGATCTCCTGCT--TCTGTCAGTCCCTGTGGCATCTGAGAGGGCAGTAGTAGAcaccctcaaagcagatgagtcagggatt s bosTau2.chr10 35417893 295 - 70001009 GATTTCTCAATATCCTTTTTGACTGAAGTCGTGGGACAATATCCCACTTTTCCTTAGAGAAAATGCCCTAAAATTGATGAATTCTTACTTG----ATACCTCACTAGAATAGAAATGCTCCCATTGACTGGTTTTTAGAATTGTAGGTGAGAACCATATGGGTTTTGAAGAAGACTCCTGTCCTTCTCCTCAGAGCACGGATCTGGGGACTTAAGGTCAGAATCTCGTAGAGGCTCCAGCTTCTCTGTCAATCCCTGTTCTCTCTGGGAGGATGGT-----------TCAGAGCACAGGTGCTGGAGACT a score=3623 s mm7.chr9_random 4136335 117 + 9745104 GATCATCTCTCCAGTACTTCT-TGTCCAGAGACCTTT------GGGTTTTTCTTCATGGAGGTAAATTATTCAGGAGGTCTTTTACATATGAATTAGTT-ACAACACTTCTCTCTCAAACAGCAG s bosTau2.chr10 35421403 125 - 70001009 GATCCTCTCCTGAGTGTTTTTAGGTGCAAAGACTTTTCTCTAAGGATTTACTTTCAAGAATGTAAATAACCCTACTGATCATTTTCATCTGAATTAGTTCACAACACCACTCCCTGAAACAATGG a score=14570 s mm7.chr9_random 4136822 937 + 9745104 GGGAGTGAGAACCTGGAAAGAGAGAACCATGTAGAAAAAAAAGGC------AATATATAGAGAGAGGCTTTATAATGTTGCTGCAGCCTGGTTCTCCCTTCCTGTCATTCTCTCACCCCATCTTACTGTTGAGCTTTTCTCAGAAATGTCCTCTTCTTTGAGGCCCAAAAAGA----TTACATGGTCTACAGCTGACTAGGGCTCTG--------GGGATATAATTGCCTTTCTGGGCAAGAAAAAAAAATCCATGAAAATCTCTGTCCAAAGTCAATTATCTGAGATCTGGAGTTGTGCAGCCTGCCAGCGGAAACTCCAGGCCATTTGTATGTGGCCCAGTATA-------CCTCCGCCAGCTTTCCTGGCTCAGCCCTCCATCCTCATGGGAGA-TGGAGGCAGCTGCAACTGCCTCCTCAGCTGACATCCACCACAGCCCGCACCCT---------------CTTCTGGGTTGCTATCAGCTGTCATATTTATGCTGGGAAGTCTTGTTGGATGTGTCGCCCATCCTCTGCATGGTGGGTGAATCTAGTGCATGTTTTGTAAGATGGGTGGA----TGG--AGCCAGGAGCTCAGTGCTGTCCAGGGAACTGGGGGTCTTGACAGAGGCTCTGCCTTCTCTTCAGGGTTGTGACTATGTA---TATGTGAGTCAGGACATCTCCAGGACCTTTACATTTATCTCCTGTATATGACCAGCTGACTTCTCTTCTTGTCCAGGAGGACTTTGGGCAACTCTCCTGCAGCATTAGGGAACTAGACCAAATGGCTTCAATGCCATTTCTCTAGTTTGTGGTTCTTAAGAATCCTTAAgaggctggggctatagctcagttggtaaagcagacccaagtttgagtcccagaacctgtataaaaaaaaaacagttctgggatggtagagataggtagaggcctgggacttagtgcatggccaacttagccaaatgggtgagtcccaagcc s bosTau2.chr10 35421656 828 - 70001009 GAGGGTGGGCAACTGGGAAGTAAAGCCCACGTAGGCAGGAAGGGACTAGAGACAGCATAGGAGGCTGCTTCGTAATATTGCTACAGC---------------------TCCCCCGCCCCACCCTGGTGATGGCCTTTTCTGAGAAATGTACTTTTCTGTGGGGCCAAAATAGGATTGTTGTATGGTCTGCAGCTGACTGGAGCTCTTTGTTCCCTGGGACATGATTGCTTTCTTGGGCAATGAAAAAAAGTCCATGTAAATCTCTGTCCAAAGGCAATTATTTGAGATGTGAACTAGTGAAGTCTGCCAATGGAAACTGCAGGTCATTTGAATGTGGCCTGGTATGTGGGATGCCTCAGACAGCTTTCCTGTCTCTTCCCTTGGTCCTTGTGGGAAACTTCAGGCAGTTGCAGCAGCCTCTTTGGCTGCTGTGTACCTCAGTGTTCTCCTTGGAGTGAGGGAGCTTCTTCCTAGTCAGTGTCAATCATCTTGACCAAGCAGTGAAGTC-----AGCTAGGGCCTTCATTCCCAACTAGGTGCCTCAAATCAACATAGGTGCTACACAGTGAGAGGAGCCCTGACAATCCAGAAACCCAAGGCCAACCAGGGATACCTAGATTTTAATCTAGGTTTTGTCATCTTTT----ATTAAAGCAAGTTACAATATGCAAGTCATGTTGTCATCACAAGCCTTAGTTTTTCCCTGTGTAAAATAGTTGGTAGGTTTCCACCTTG----------CTTTAAAAAAGTA-CTTACAGTAGTTAAGTACTAAAAAAAAAAG------------TACTTAAGTACATAA-----AAAAGTACTTAAGG-----------------------------------------------CAACATTTTTGTAAAAGTAATA---------------------------------------------------AACTTAGAC---TAGATGATTTCTAAGTT a score=17388 s mm7.chr9_random 4138093 774 + 9745104 TGCTTTAGAATTCCTGCTACCCAGAGGAGGACTACCTTAGATGAGAGGAGGACTAAGAGCTGTG-GAATCAAATCTAACCTACACCTCT-AATTGGATC--------------AGAAAACGGCTGTAACCTTACAGTGGACAATCTGGGAA----CAAAAGGCTG-------------CTCAGGCCTCC--CAGAATGCTGT--GTGCTCTCCCTCATCCCTTCCAATGCTGCTCAGCCTGCAGG-GTCTGCCTCA-------CCTCTCCACTGTTTCTGCTTTTCTTCCCCAGAGTTCCTGCTTTGCTGGCCGCTCCCACCCACATTTTCAGATGTACCCTGTTTCTCTCAGTCTCTCCTT--------------------------TTGGATTTGCTCCATCTGGACGCACAGACTGCTCTGTTCGTGTGTCTTAGTTGCCTCCAGGAGAGGATA-GAGATATGTCTTCTGTGCTGTGCCTAGGCAGCATATTCAA----TTTTTTTGCTATTGAATTTGGAAAAGGCTTTTAAATTAAAATCCTACTTTTTTT-------------------TCCCTGCTGAGAGCCAAGTTCCATATTCTGGGCTTCTTGTTCATTTTTCAGAGGC-AGGGCAACGTGGGCAAGATCAAGCCAGATCCTGACAAAGCCCAGCCTCCCCTGAGCTCAGAGCCCTATGTTTATTTTACAACAATTAGAAGCATACAGGCTCCTTTGCAGACAGGTTAATACATCAGACTAACGTGTGCAATGCCCTTTCTCAAACATGCCTGGTATAAGAACCTAGAA---AAATTTAAAAATGACCCTAggcactggggagatggctcagtgagtaaagtgcttgccttg s bosTau2.chr10 35422659 817 - 70001009 CTCTTTAATAAGCTTGCCAAATGAAGAGAGTCTACTTGAAATCA--------TTAAGGGATGTGAGAACCAAATACAATGTGAGCCCCTTAATGGGATCTTGGATCAAGAAAAAAAAAAAAGCCAACAATCTGCAATTGACATTTTGGGAAACAACTGAGGTCTGGGATCCAGAGCGCCTCCAGCTTTCTCCAGAGTGCTTTCTTTGCTCTCCTCCCTCCCTT----------TCAGCCTTCAGTCATCCTCCACAGATAGACCTTCCCCAGACACTCTG----GCCCACTCAGCTTTCCCTCTGCCTTGGCTGCTGCATCTCAC---TTCCACTGAACTCT---TCCTTCACACTTTCCCTCAGCTAGAAGCATGCCTGGGAGCTGATGGGTATTGCTTGGTCTGAACACATGGA------TGCCAGTGGAAGCTATTT---------AGAGGCCACGGGTCCTGGCTTCTGTGCCGTCCCCAGCCAATGCATTCAAGAAATAATTGTGCTATTGAACTTGGAAAAGGGATTCAAATTCAGATA-TACTGTGATCATGATGATGGTGATGGTGATGATTGTTAAAGGCAAAGCTTCGTATTCTGGGCCTCATGCTCATTACTCAGAGGTGAGGGCAACATGGGCAAGGTCAGCCTGGATCCTGATGAAACCCAGCCTCCCCCAAGCTCAGAGTCCCGTGTTTATTTTACAACAATTAGAGGCATACGGGCTCCTTCGGAGACAGGTTAATCTATCAGGCTGACTTGTACAGAGCCTCTGCTTAGATGTGCCTGGTGCGAGGTCCTTGAATGCAGCTTAAAAAATTACCTTGGTAACAGG------------ATGGGGAAAGCACTTTCCCTG a score=35396 s mm7.chr9_random 4192724 944 + 9745104 ACATGGAAAAGAGAAACCAAACAACTTTTCCAGGATTCCTTCTTCTGGGACTGACAGAGGACCCAAAACTACAGCCTGTCTTTGTCAGTTTGTTCTTTTCTATATATCTGATCACCATCCTGGGAAACCTTCTTATAATCTTGATTTCCATCTCTGATGCCCATCTTCATACCCCTATGTACTTATTTCTCTCCAATTTGTCCTTAAATGACATCTGTTTAAGCACAAGCACGATCCCAAAGATGCTGGTGAACATAAAAGAAAATAGTCAAAGCATTACATACAAAGGCTGCCTCACTCAAATGAGCTTTGTTTTAATTTTTTGTGGCATGGAAAACTGTCTCCTTGCAGTAATGGCTTATGACCGTTATATTGCTATTTGTCACCCCCTAAGGTACACAGTCATCATGGAACCCTGTTTTTGTGTCCTGCTGATTCTATTGTCCCTGCTCATTAGTGTTGTTGATACTTTGATGCACAGCCTTATGGTGCTCCGACTGTCATTCTGCACACACCTGGAAATATCAAATTTCATCTGTGAACTTCCCCAGATCCTCAAGTTGGCCTGTTCTGATACTCTCATTGATAACATATTGATCTATCTTTCTGCATGCATATTTACTGGTATTCCTATCTCTGGAATAGTTTTTTCTTATGTTCACATAATATCTTCTATTTTGAGAATGTCATCATTAGAAGGAAAGCACAAAGCCTTTACCACCTGTGGGTCTCACTTGTCAGTTGTATCCTTGTTTTATGGGACAGCTTTTGGGGTATATATTACGTCTATTATTATGGATTCATCCAGGAATACTGCAGTGGCATCAGTGATGTATTCTGTTGTACCTCAGATGCTGAACCCCTTTATCTACAGTCTGAGGAACAGGGACATGAAAGAAGCTATGGGGAAATTCTTCAGTCGGATGGCTTCTTTTCTATGATAT s bosTau2.chr2 62595 944 - 86543008 ATATGGAAACAGAGAATCAGACAGTTATTTCAAAATTCATCCTTCTGGGGCTCTCGGATGATGCGGACCTTCAGCCCCTCCTCATTGGACTGTTCCTGTCCATGTACCTGGTCTGTGTTACAGGGAACCTGCTCATCATCCTGGCCAACATCTCTGAGTCCAACCTCCACACCCCCATGTACTTCTTCCTCTCCAACCTGTCCTTCACTGACATCTGTTTCACCTCCACCATAGTCCCCAAGATGTTAGTAAATATCCAGAAGCAGAACAAAGGCATCACGTATGAAGGATGCCTTACCCAGATGTATTTTTTCATGACCTTTGCTGGGCTAGATAATTTGCTACTGACAGTGATGGCCTATGACCGGTTCGTGGCCATCTGTCACCCGCTGCACTACACAGTCATCATGAACCCTCACCTTTGTGGTCTCCTGCTTCTGCTTTCTTGGCTGATCTGCCTGACATATTCTTTGTTGCAAAGTTTGATGGTTTTGAGGGTATCTTTCTGCAAAGAGACAGAAATCCCCCACTTCTTCTGTGAACTTGCTCAAATTCTCAAGCTTGCCTGCTCTGACACCCTTGTCAATGACATTGTGCTGTATTTTGTAACTGGCTTGCTGGGTATTATTCCCCTGACTGGGATCCTTTTCTCTTATTCTAGAATTATCTTCTCCATAATGGGCATGTCATCTTCTGGGGGGAAGTATAAAGCCTTTTCCACCTGTGGGTCTCACCTCTCAGTTGTCTCCTTGTTCTATGGCGCAGGCCTTGGGGTCTACCTCACTTCAGGAACAGCCCACCCCTCCAGAAAGGGTTCAATAGCCTCGGTGATGTACACAATAGTCACCCCCATGCTGAACCCCTTCATCTACAGTCTGAGGAACAGGGACATGAAGGGGGCTCTAAGGAGACTTTTCACTAGAGGAACATACTCTCAGTGagat a score=8743 s mm7.chr9_random 4320749 262 + 9745104 GGAAAGCCTGTGACATTCAGGCTGCTCTTGTATAGAGAATCACCGTAGAGACCACTGAGTCCCATTCCTCCCTCAAATGCAGCTGTCCCTTGCAGCCAGCCCGACAGATGGCCAGTTTGCTTCATAGTAATTGCCATTTGATCCTCTCCTCCCAGTGTGAATGACTTATGCATGCCCTCTTCTCCAGTGCCTGGCCACC-----CCTCTGAAGAAAGTAGCCATCGTCTTTTTGCTTTGCCTGTCTCCCCACAGATTCGCCTCTGAA s bosTau2.chr15 15862104 234 + 53815408 GGGAAGCCCGTGACATTCAGGATGCACTTGTG-ATAGAATCACCATAGAGACCACTG-------CTGCTCCCCC----------GCCCCCGGCAGCCTGCCCGACAGATGGTCAGTGCGCTTCCTGGTAATTGTCATTT--TCCCTCTGCCTCTGTGTGCGCGCCTCGTGC-------TGTTTCTGGTGA--GCTCACCCTGTTCCCCTGAAGGCAGTGGC---TGTCTCTTCACTTTCCCTGTGTCCCCACAG-TGTGCCTCTGAA a score=5418 s mm7.chr9_random 4379804 146 + 9745104 TTTTCAAAATACTGTACATCTTGATGACTTTGTTGATTCATTGAAATGTTATTTCATTAATTTGAGAAATATTTGTTGAACAACTGAGTATTTTGCAGATAGTCTTCTGGCATATTTATGCAGATACATTCTCTAGTCTAAAAGAG s bosTau2.scaffold7393 24601 137 - 38964 TTTCCAAAAAAGTATGCATTTTGATAGCTTTGTAGCTTCACTGCAATTTTATTGCTTTGATTCAAGAATTATTTATTGAATATCT-AGAATTTAGCAGAGAACCTGATG--------AGGCAGGTGCTTTCTCTGGCCTAATGAAG a score=42974 s mm7.chr9_random 4432362 1647 + 9745104 GTATGAAGTAGCTCAAGTGCCCTCTACAACC-----ATTAAACTCCCAGCTCCCC-TCTTCATTCCTGGGTTTGGAGTCCAGCAAGCTCATAACTCCACTCAGGATCAATATTTTAAATGTTTTACCCTGTTTTTAATCAGCACAGCT---TATCTCATATTTGACCCTGATT---GTTTATTTCTACTGTGATTTATTTTCAGTTTT----CTTTATGCTGTGTTTGGAGTAGGAGGATTTATCAAGCATATTATCTCACTGCGCATCCTGACC---CATATTTC-----TTTTCTTGGAGAACAAGG--AGGCAGAAGATGAGAAAAAAATTTCCTGTTCATCTAAATGTT-----ACTAATACCAATTTATGAAAACAGCAGTTTTAAGAACTCTTTGGAAAATGGGCAAGATGAAAGTAAAGAGTATAT-----TAAAGCTGAAGTAATGGGGGTTTGGGAGATTCGGAGCTGGG-AAAGAGGCAAGGGATGAAGGAAGAAGATGGCGTCTGGATTCCT--GCCCCTGTTTGCCT------ATCCTGAGTTCTGTCCTTTCTCTTCAGTGTGAGCAAGAGTCTTTCCTTCCCTCCCTGCTGGTCTACTGCCTCAGTCCTTCTTCTCTTTCTCCTCACCAAGGGAACAGACGACAGATT-----TCTTTTTTTCTCCTTTTCTTAGAAATGTTCACAAAGCAAAGACCACAAGATTCTCCTAGGATTCA---------------TTGT-------------------GGTTAGGGAACCAATCAGAAACCAACTTCTCCTTACAGCTTAGTTCAAGCAAATTATACTGATA------------CTTCTGTCATATGGTG-----------GACTATGTGCGAAGCTTGGGCATCCCAAAGGGA------------------------------TGAAC-ATTTTTTAG----------ATACATGA--ATGGTC----ACCCT-----------AGTGATGGAGACTCCCTCTGA-------ACTCCCCTTACAG-----TCCCCTCTTTCCCCAACACTGTTACCAGCCTCTGAGCCGACGGGGAAGAAC-AACTCCCTCCTCGAGGGGACAAGAAAGCTGCTCATTCCTTATTCTCTCATTTCATCG-GAGGACTCTGGCTGAGAAAGCATCTCTATTTTGGCTGTTGGTCACTACCTGATGAGGTCGCCTGAAGAGGTCA----------TGGCCACCAGTCTGCTAAGGCCTGTCCTGAGGCTCATCCAAGTCCCAGCTCCAGTAGGCAAATGGCAGATGGTTCTTCTATTTTTAG-TTCTGGGATGCTGTCCATGAATGAGCCAGTGACCTGGAA-AGCCA-------------TTGCTGTTTCTGAGTCCCTCATTGTCATTCATTGTT-TACCAGAA--------GGTCTAGGGGTGTGGGGACTGGAATGGTACAGAGATTACTGAGAGGGACCACGGTCTGTGGACACAGACCTCGACGACTCAT---CTCCCTGATAACAACACTATAGCCATCAAGAATGATTCTGGGCATACCAAACTAGACTGTTGAGTAATGATGTCTGCtttattattattattattttattCAGCATTGACATCTCCAGAATTTCTTTATCCTTCTTTTCTATCACTAAAACTTTTTTTTGAACACCCATTCCAGTTTTTTTGCTTGTGTAATTAATTATGCATTTACTTTATGTAAA----TATATTTGTATTGATGTATATTATAAAGCTTATACAGAAAGATAGGGGATTTCTAAGCTGAAGTATTTCTAAAAGTTCAGAACATTCCATAATTATTTCTGGCTACTCATACATTTTCTGGCATGT s bosTau2.chr15 43247450 1781 - 53815408 GTGTGAAGTATTTTAAG---CTTCTTTATCCCAGGAGCTGAACTCCTAGCTTTCAATCCCTGCTCCTGG-CCCAGAGCACAGCAAGCTCACAGCTCCATCTAAGCT-AACATTTTCATTATTGTATC-------TGAGCAACAGAGATGCACATCTTATATTTGAGCCTGGTTTGCGTTTTGTTGTTTTTTGCCTGTTTTCATGTTTTACTTCATTGCTCTATGTTTGGAGTAGTGGAATTTATCAAGCATG--AACTCAGTGCCTATTTTGACCGGACATGTTTCATCCCTTTTCTTGGAGAATGAAGGAAAATAGAGGATG-GTAAAAGATACACTGTTCATCTAAATGGTTACCAATTAACCCCAGTTTTTGTAACACCTAATTTTAAAATCTCTTTGGGAAAAGGACAAGATGAAAGTGGAGGGCAGATCCAGATAAAGTGAAGGAATTGGAGACTTGGAAGCTTGGGAGATGGGGAAAGAGGGGAGGAAGGGAGGAAGAGGA---AGTCTTGTTTTGTAAGCACCTGCTTTTTTGTTGGCATCATGAATTCTGTCCGTTTTCTTCAGTGTGGGCAAGAGCTCTTCTTGCTCTCACGCTTCTTCTATCTGCTCA--CCTTCTCCTCTTTCTTCCGAGAAAGGGA---GGTGGAGGATTGTGATTTATTCCTCTTCTTTTCCTCCCGGATTTTCACAAAGAAGAGACCA-AAGATGCTTACAGGACTCAGCCAGGTCCTTCCCTTTGTTCCTGAATAATGATCTCTAGGTTGAGACACTGGTCAGAAATCAAATTCTCTTCAGAACCCAGAGCAAGCAC-TTGCACTGATGAACTTTTCCTTTTTTCTGTCCTGCAGTGTTTTTAATACAAAATAGGTGCCAGGCTTAGAAAGCCCAAAGGAAAATTCATAGAAAAGAAGCAAAAAAGGCTGCTGAGCCATCATTTAGTCCAGAAGTCATCCTTGATAATGGTTGAGAATCCTTCCTTGAGAATAATCAGGGAGACTCTCTCTGATTTCTGAGCTCCACTTCCATCCTTCTCCATTCTTTAGCCAACACTGCAGCCAGTCTCTGAACCCAGAAGCAAGAGCCAGCTCTCTGGTGAAAGAACTCCAGTCCCTGATGATTCCTGGTTCTCTTGTTCTACTGTGAGGACCCTGGCTTTGGAAACATATCTGCTTTGGCTCTTGGCCATTATTTGCTGAGGTCACCTGAGGAGGCCAGTGCTGTCATTGGCCACCAGTCTGGGAGGGTCTGTCCTGGGGCTTTTTCAAGCCCCAGCTCCAGGAGGTAACT-GCAGATGGTTCTTCTATTTTTAGATCCTGGTGCATTGCCCATG---GAGCCAGTGACCTGGAAGAGCCAATTATCCCTTCAGTCTCTGTTTCTGACTCCCTCATTTCCCTTCATTGTTCTACCAGAATTTGCCTCTGTCTATGGGACTGGGA--TGAAATGACCCAGAGTTAACTGAGCTGGGTTCTGGTCTGTGGACACAGATCCTGATGTTTCATGTACTTCCT------AAGACTGTCACTACCAAGACTCATTTTAAGCATAACAGAAAGGACTG---------------CGTGTTA----------------------CATCAGggtctccaaattttc--caccatgctttactaatagtaaaac--atttttgaacacatgc-----ttgctttgcttgtgtattcattcataaa--tactatatgtgtacatttataattatatgtgtacctgttataaagcttatgtagaaa-ataggaaatttatagactgagataTTGCTAATGGATTAGAAGTTCTCGTGTTCTTCTCTTGTACCACATAGGTCTTCTGGCACAT a score=4073 s mm7.chr9_random 4436874 232 + 9745104 TTGCCTTTCTCCATTTCT--CTTTTCTTCAAGACCTCCTGTTAATCAGACGATGACACATGTA---------------TTTTAGCATCCAGAGCTTCAG-TTCTGCTGAAGCTCTGGATGCTCAGTCCTCCTCAGCCCCAGCTAGGAGAGCTCACCTCTTAGA--ATCCACGTGGAGTGCTTA---------------------------TTATATCATTCACTGAG----TTATTTCAGGGCTTAGAATGTCCACAACCAATGTTTTTATTTGGTCCTCCTT s bosTau2.chr15 43256425 278 - 53815408 TTTTTTTTTTTCATTTCTTTCTTTTCTTCAAGGCTTCTTATTGTACAGATGGTTATACCAGTACTTTTCTTAGCTTATTTTTATTTTCATTAGCTTCAGATTATATT----TTCCTACTTTTCATTACTTCTCAATGCCTTCTGGGAGACCCCATCAATGTGATTATTCATCTCACTTGTCTCTGCTCCAATTTAATTCATTTTTATTATTTATGTCATTTATCAAATTCTTTATTTCAGTGTTT-GAATTTTCACATCCAGTGTTTCTATTTGATCCTTTTT a score=15134 s mm7.chr9_random 4443273 566 + 9745104 TCTTCCAACCTGGAATGCCTTT--ATATCTTCCCGGGCCTTTGGGATTTTGCCTCAT---CTTTGGAACTTGAGCTAGGTGCCTCTCTGGAAGCAGATTTCCTCCTTGCAGCGTTCAAGGTTTGGAGGAAGCCCAGGATCTCAGGAGGGAAGAAAGAGTTAACC--TCCATCTGAGGGAAGCAGCACGGTTCAGGTGAATGATAATTAATTAAACAAAAGTTCTGAATTCAACCAGGAATCAAATTTGGCATCAGCTGAGACTTAATTAGCCTTAATTACAGCCAGAGATTGTAAATGCTCTGTCCCTGGGCGCCTCCATCCCCAGTGCACGGGTCAGAGTCTAGAAGC----TCTG--------GGTGTGGGTGGGAGCACTTCCTTAAGCTCAGTCTCTGTAGTGCTG-GGCA-------CAGGAG--ACAGGGATGCTGCAG-ACTTCTGCAGCCTGGA----AA----GGGAAGGGGTCACTTTCC---TCTGCCTGGCCTAGGCA--CCTTCGAAGGTTCTATGGCC------TTCTGTGGATTGGCTGAGCGGTTGCTCTGCTGAATGGAAGCCAGCTGCTTCCCATCGCAGACCTGTGTGTGTTTCTT s bosTau2.chr15 43260148 594 - 53815408 TCTCCCATCCTGAGTTGTCTTTTCACGTCCTCCACGGC--TTGATATTTTGCCCTATGCTCTTTGAAACTTAA-CTAGAAATCTCCGTGAAAGGAGATTTT----TTTCAAGTTTCATGGCTCAG-GGAAGCCAAGAGTCTCAGTGGGGAGGAAATGGTTAACCACTTTGTCTGAGGGAAGCAGTAGTTTTCAGGTGAATTATAATTAATTAAACAAAAGTTCTGAATTCAATCAGGAGCC-AATTTCGAATCTGCAGTGATTCAATTAGCTGTGATTACAGGTAAAGACTGGAAATACTGTGCCCTCAGGGCCCTCTGCCTCC--TGCAC---TTAGAGTCCAACGGCAGTGTCTGGGGTGCCTGGTGTGGGCAAGGGGCCTTTGCCAA---CAGCTCAAGTGGTGCTGCGGCAGGAGCAGCAGGAGCCCCAGGGCCACAGTAATACTGCTGCAGGCTGTATTTCAACCCTGAAAAGGCACCACTTTCCTTTTTTTTCCAGTCTGAGTAAGTCTCTGAATGATCTGCGGCCAAGGTTTTTCCTGATTTGCCAAAGGAGCTCTTCTGCTAAGCACAATCAATCTATTTCCCTTTG----GCAGTGTGTGTTTTTT a score=2044 s mm7.chr9_random 4444180 96 + 9745104 ATAATATTGAAAACACCAGAAACAGTAGATCAGAGCATGAGGA------AGCATTGGGCCAGCCATGAGTGGGTGCCGGggtttagaactctctgtgtagcc s bosTau2.chr15 43260800 88 - 53815408 ATTATCTTGAAAACACCAGAAAGTGCAGGGCAGAGCTGGAGGAGAGTAGAATCCTGGA--------GAGGGGGTGCTAGAG------GCTCTTTTTGTGTCT a score=4069 s mm7.chr9_random 4444388 529 + 9745104 cctgctgtctcagcacttg--------------------gcagg--ctaaggcaggatgatcaggaatc-tagccca--gcttcagctacagctccacagtgtttgaggtcatcctgagctacctgtttcaaaCTtgtctgtct--atctgtctgtctg--tctgtctgtctgtttacctgcctgcctgccttccggtctgtct-----gATGTGCCTTGAGCACTCTGTGTTTCAATATCTCAGAGTAGTAATAATACCTTATTAAGCAGTAAATAACTACTGGGACAGTCTCTATTAGAAATTTTAATTTATATGGAA-GAAATTGAGGCTCA-------TGTAATCAG--------CACGTGGAGGAGTCATGGCTAGCTGATGTGAGGCCCTGGGTGCTTTCCCTAGGAAGCTTCATTTTGGAATAAGCCTAATGAGCTTGTG----------------------TGAGGCACAAATTCTGCCCACCAAAGATGCACTCCTGCTTG-CCATTCTCCAGCTGTGCAGG-------GAGGCA-----GCACTTCCTCA-CCTGCTTGGAATACCTTCTCCTTGCTGCTGGCCTCCTCTTTCTCTGCCCCACTC s bosTau2.chr15 43261006 589 - 53815408 cccactctctaggcacgtggacttaagcagtcgtggttcgcgggctctagggca-caggctcagtagttgtggcctatgggcttagtt---gctctgtggcatgaggaatcttcctggaccagcga--tcgaacctgcctcccctgcactggcaggcagattcttattgactgtacaactagggaagtcccTCCAAGCTTCTTTTTTAAAACATGCTTTGAGTATCATGG-----CATATCATAGAGTAGGTAC-ATATGTATTGAACAAATGAATGATTTCTTAGATGG--TCtatcatagtctccgttttatatataaggaagctgagactcagaaatcttaaaaccagatggatgctaagcagaggagctaggactgtttgactttagatcttgagctttttccaTAAAAAGCCCCCTTGTGGAGTAAG----GTGAGCTTGTGAGGCTCATGTGGGAATCATGCTTGAAGCACAAA-ACTGCTCACC-------CTATCCTGACAGTCCAGTCTATATTCAAGCAAGTATAGATAAGGCAAGTTTGATCTTTCTCAGTCAGTCTGGAGTACCCTCTCCTTATTTCTTACCTCCTACCCATCAGCCCTTCTC a score=7420 s mm7.chr9_random 4445528 413 + 9745104 ACCCTAAAAAGGTATCATGAAAACCGAAAAGCCTGGGGAAAAGGTCACAAGAAGACTCTA-GATGAGGGGTGTCCTGCTTTAGAACAGAGACTGTCTGAAGAGCATGGGGTGGTAGAGGTTTGATCTC----CTACAGAGAGCCCTTTAAATCTCCACAGAAGGACATCAGGGAGAATGCCACTTTACCAAGAGGCTCAAAATAAACAGG------------------------AACCAAAAACACAGTCAAAG------AATCTTAGGCGTGGATGATCCTTCTGGACTTAATAAGGGTTCACATGAGTAATTCACTGGAGAAGATACAGTAGAAAGAAAGCTACTCCATTGGGGGAGGGGCTGG-AGAATATGGTGGGGATTTATTTAAT-AAAGTGCTCACTCCAAGAGAGTAGCTTGTAGTCTGACCTCAACTAGCTGCTTGATCT s bosTau2.chr15 43269287 423 - 53815408 ACCCTAATAAGACATCCCAAGGATAGAAAAGAGGTGGAGAAAGGT--------GACTCAGCAATGAGGAGGGTCTAGTGTCAGAACAGAGTCTG-------------AGATGGTAGGGATTTGATCTTGGGTCTGGAGGGTACCCTTTGCCTCTCAATGAAGGGGCAGCAGAGGAAATCCTATTTTATGCAATGACTCAGAACAAGTGGATCTTGTCACTGTGATTTTTGTGCAAGGTGGAGATATAGTCAAAGTCCCAGAATCTTAAACCTGAGTGGGCCTTCTGGACATAATTAGAGGTCAGATGAATTGCACATGGGAAGTGAAGTAGCTGAAGGGATATTGTTCT------GAGTCGGCTGGTGGGAGAAGGACCCCACTTATTCAACAAAAATGATCagatctgggtaccagaacctgctccgaccttaacttgctgtgtgagct a score=3464 s mm7.chr9_random 4446249 159 + 9745104 tttcctcctgtgtaaaatgaatatgctaaacttacatagtgcttaaggcctcttccaacATCAACAGTGGAGCTCTGTGGTCCATGGCAGGGAAATAACATCAGAGTGGCTAGGATGGTTGGTAGGAGAGATGGG---AATCAGAAGC-------AGACTTCATTCATC s bosTau2.chr15 43269733 153 - 53815408 tttccttctatgcagcctgaggatattaa--ctgtataatgtttaaggg-gctttcaactctaagagt-------------ctgtggtAGAGAGAGAGAATCAGAGGGGCCAGGGTGGCTGATAAACAATGTGGGTGATGTCAGACACAGTTTAGAGAATTCTTTCATC a score=22285 s mm7.chr9_random 4447394 852 + 9745104 TACTTGGTGGCAAAGATTGGCAGGCTGTATAGAAGTTCACTGGCAATGTAATTAAACGGTGGAACAAGACAAACCTGGATTTACATTCCAGACCTGCCATTT-------------------GTTAATTA---------------TTCATACTGT--------------------------------------GTTGATATAAGAAATCAATTAGATAATGTACAGGGAATACGGGGCAGAATTCCCATCCAGCCGCACATTCTCATGACATAGTCATCTGTGAAATTTGTGATCCAT------------------TCACAGAAAATGTGGTGGGAAGATGAGAGAACTCAATCTACCAGAAATGGACTTTGAAA-----CCTCTC----TGGGCCTGTC--CCTGGACGTTGTCAGCTTCT------CCAGCAGTTGCAAGGCCTGTCAAGAGGCAAGGTGGTTATTAATGGTTAAGCAAGCTTGGCTAACTACTGGTTTAAGAAGGAGCTGAGACACTGAGACAGGTGTTTCAGGAGAAGAGA-CTTCCCGACTAATGCAAATAAATCTGCTGAGCAGTTGAAGTGTAATTAAAATT---ACTGCAATATTTATAGAGATCTTTTATTCCTTGGTAGAGTTCCACTTATGTGCAAATGATTTCAAAGGAAAAGTTGGGGGAGTATTAAATGTTCCAACTAATTAAATAATGCAATGGGTTCTGATTATGCCATTGACATCCACTGAGCTGGAGAAGACGGCTCTTA--TAGAAATAAAACCCAAACGAT--CGATGCAGTGGGCTCTG-TTGCCATTTCATATTTGAAC-----ATAAAGAAGACGAGATGACC--CCATGACAAATGGCCTTCTTACTCGTGAGAAAACTAGGTCTAAAAAATTGTCGAAATCTGTGGTCACCAGTATATCC-AGGAGCTATCGATTTGTTTCCATTAAGAGCTGGAGTTTCAG s bosTau2.chr15 43270002 936 - 53815408 TATTTAGTGGTGCAGATTGGAAAGCAAAATGGAAGGTTACcagtagaaaaaataaactgtggaacaagacaaatctgtgtttgaatccaagctctgaaatttcctcatcgtgtatctttgggtaagttacataatatttctgttttcaaattgctcaccagtaaaactgggaaaatttacatgcctcccagagttgatgcaagaaagaaaccagataatatatataaggcactcagaacattttctggtaAGTTATAAATCCTTATATC-TAGTTATttctcctcctcctcctctgtcttcttcttcttctTACTTCACAGCAGGTATGGTGAGAAGAGAAGACAGTCCAGCTCAGCCAGGACAGGCTGTGAGATGCTCCCTCTCCAGCTTGGCCAGTCTCCCCGGACATTGTAGGTTTCTATCAAACTAGAA--TCCAAAGCCTGTCAAGTAGCAAGATGGTTATT----------------TGGCTAATTGATGGTCTACAAAAGAGCTGAGAGGCAGAGACAGGCATTCTAAAATAGGAGAACTTTCCAACTAATCCAAGTAAATCCATGGAGCAATTGAAGTGTAATTATATTTTTTATTGCAATATTTATGGGGATCTTTTATTCTTCAGTAGAGTTCCGTTTAAGTTCAAATGACTT-----AAACAGTTGGGGGAATAGTAAATGTTCTAACTAATTAAATGATACAACTAATTCTAATTATGCAATTGACATCCATTGGGCTACAGAAGATGTAGCTGAGTTAAAAACCAACCACCAACAATGCTGATGCCGT---TTCTGATTTCCTTAATAGAGCTGGACTATTTGTAAAAAGAAAGAGAATATCAATAATAATAAATGACCT--------GAGTGAAAACTAGCTCT-GAAAATCGTTGAAAGCTGTTGCCATT-GTACATCCTAGAAGTTTT--ATTTGTGCCTCTGTAAAAC-AGAATTTCAG a score=53146 s mm7.chr9_random 4449742 1694 + 9745104 ctAATTAGCTTGATCTCACAGGCCCTTTGAGAGGACCTCTAGTGACTCTTCCTTG---ATTATAGTTCTCCTCTGTCTCAGGCAGAACCAT----------GGCCCCTCTGGGGGCTGGGGGTGGGGGAGGCTCTCCAAAGCAGCAGCAGTAAGGTGTGTGGGCA-----CCAGGATGTGCTTTCTGGATCCTTCGGAGAC--CCTATTTAGGATGTCCTGGCACATCTCTCTGAGCATGTGAGGTGCTGCTGAGGTTGTGA-GAGAGTTCTTTGAAGTTCACTTTTGCAACAAGGACATGAAGCTCCTTGGAACGCTGGGCTCGCAGCTTGCTGAGCTCTGCAGCTCC--GTGGGACTGGTTGCTGCCGTCAAAAAGAACAGAGCCGTCATTCTGCAGGAGGGTTTCTATGATAATAGGGTTTTTGCCTCCCAGTAGTTGGAAAGGTGCTAATCTAGTGACTCATGAGCTACATAGAAGGAAAAAAAAGTGCAGCCTGGAAGTGAAACTGCATTGTGTTTTTTCTGAACTCCTCATCT--TGCATCTATGGTAGGGGGCAAACTGGAGCACAGCCGTACAGAGCAGAACCC-GTTGTTCTGGCAATCCCACTGGAGGGATCTTTTACCATGACCTTCCCTGGAAGTGGTCTAGTAATACAGGAATCAGGGAGGGGTGGACACAAGCTAGAGGGCTGAGGCAGTAAACTACCCCACACCAGTAGGAAGAGGGCTAGAAAGAGGGCTGGCCTGTGAATGGGTTTGCAAAGAGGAAATGATCACCTTAGTGAAC-----------CCACAGCTGGTTGGGTGCATGTGCCAGTGTATGTGCACCCATGTGCTTTCAAGTTCAGGTGTATGTGTACATGTAGGTGGGTTGGCTCTGGATGCT--CAAGGAGCATGTAAGAGCCCGTGTACAGTGTGTGTAGTGTACACCCTTGCAGATGCGTTTTGTTCTGAATGTGGCTTCTCTTTTT-----TCTTGGACTATAA--ATATTTGAATCCTCTA---------------AGCTTTTGGGGCCTGAG----------CTGTCATTGAGTAGCTGGGGTGTAGGAACCAGATCAGGACTTTGCTGTTTCCTGGAGAGCAGCTGGCATTTCAATTGGGCCCATGTTGGAGACACACA--------AGCCTTATTGGGTCAAGTCACAGGACTCTGCATCTACCCAGGAGACAATTGCCACTATCCAGTGCCTGATCTGTCTCTCCAGGGGCTCAAGAGT--------------------------------TTCTCTGTCTCTC-TCTGTGCTCC-TTTAGCTAGAGAAAGTCCCTGTCTAACTCCCAACT-CTGTCCTTCCCTGTTGGAATCAGGCCTCCCATAGAGCATCTGTCCTTGGTGTCCAACAGGATCTTGGAGCTTAGGGGAG--------------GGCACCATCTTTCCCTCATGGTCTTCTCCCACCCAGCTCTT--CAGGTAGCTCTAAACCTGAGTCACAGCCCCCCACCCCATCCAGGCTTTCCTTTCCTCCTCCCTCCCACTCTTTTCATTAGCTGCATTGAAGCTAATAATCCTGCCAGCAATTCTATTGTCTCCTCTTAATTCCAATTTCCTTTTGTCCCAAGGGGCAAATCAGCAGAGCGAAAGTAGTGAAATGGTAGTCACAGCCTCCTGGTATTAATTAGGGGAGCATTAGCTTAGTAATAAAAACACACC---TCAGTGTCAGGG---------GGCTGTG-TCTTCCTCTCTCCTCCTACACTTCTCCTTTCCTTCCTCAGCCCCAGTCAGACCTGGAAGAACATTCTGG s bosTau2.chr15 43273700 1707 - 53815408 CTGACTGCCTTAGTCCCA-AAGCCCTCC---AGGATCTCCAGCACCTCTTCCCAGCATATTCCAGAACCTCTCTG----AAGCAGAGCCTTCCAAGCTGCAGGCTCCTACAGGGGCAGTG----------------CAAGGCAGCC----CTGGGTCTGGGTGCATTATCCTGAAATGTGCTCTCTCGCCCTTCCCCATTCTCCCCATTTGGGCTATCCTGGTATGTCTTGCTGAGCACGTGAGGTGCTGCTGAAGCTGTGATGTGAGTTCTTTAAAGTTCACTTTGGAAACAAGGACATGAAGTTCCTAGGAACG-TCGGCTGCCAGCTTGCTGAGCTCTGCAGCTCTCTGTGGGACTGGCTGCTGCCGTCAAAAAGAATAGAGCCGTCATTCTGCAGGAAGGTTTCTATGATAATAGGGTTTTTGCCTCCCAGTAATTGGAAAGGTGCTAATCTAGTGACTCATGAGCTACTTATAAGAAAAAAAAC---CCACCTGGAAATGAAACTGCATCGTG--TTTCCTGAGTGCTTCATCTCCTTATTTCACTGCAGAGGGCAAGCTGGGGCTTAGCTGTAGGGAGCAGAGCCTGGTTGTCCTGGCAACCCTGCTGGAGCGACCTTATACCCCTGCCTCCCATCTAGGTAGTCCAGTGAGACAGAAATCA-GGAGCGATGCAT-----CTAG--------------------CCCCAGGCCA------------CTGGGAAAGGAGCTGGCATGTGCATGGATTTGCAA--AGGAGATAGTCA--TTGACGAACTAGTGTTAGAACCTCCCAAGTTCTGAtgtgtgtgcaagtgtgagggcatatgtgtg----catgtgtgggtctatgtgcacacgtgggctggttgactgtgtgggcttgtagtgagtgtgtgagagcaagtac---gtgtgtg-------------tgcagatgtg--CTGGCCTGAAT---GCTGCTGTTTTTGAGGGGCTTGGGTTCTAATGGTTTTTGCTTTCTCCATTCATGTCTCTGTCCAGCTTTAGGGACCTGAGATCCAACTCTCCGTGTCTTGGTACCT-GGGTGT-------AGATGACAACTTTGCTGT----------GTAGTTGGAGTTTCAGTTGGGCTCCACTTGGAGAAATGTAACTGCTTTACCCTCAGTAGGGCAGGCAGTTGGACTCTGACCCTGCTTAGAAGGCATCTGGGCCTGCCCAGTACCTGGACC-CCTCTCCAGGGCCTCCGGGGTAGGGCACCTACTCCATACCCAGCCTTGCATCCCCCTCTGTCACCCAACTGAACTCCTTTTTTCTTGGGGACATCCCACTCCTACTTGGGATTCCTGTCCCCTTCCCGTGGGATCCTGCCT-CGGTGGAGACCCTGACTTTGG-GGCAACCCCCGTATGGGAGCCCTGAAGGGCCAAAAGTCCTTCCAGCCACAGCATCTCCTCCCTGCACCCTCCCAACCTCCTCCCAGCCGGCAGCTCCCAGCCTTAGTCACAG-------CCCCACTGAGGCTCTCAACTCCTCCCACCTCCCACTCCTTTCATTAACTTCATTGAAGCTAATAATCCTGCCAGCAATTCCGTTGTCTCTTCTTAATTCCAATTTCCTTTTGTCTCTAGGGGCAAATCAGCAGAGTGTAA-TGGTGAAGTGGTAGGCACATTCTCCCAGTATTAATTAGGGGAACATTAACAAGGTGAAATAAACACGCCTCTTCAGCATCAGGGGCTGCTGGTGGCTCTGCTCACCCCCTTACCTCTCCCCTTGCTTCTTCCCCTCCTGAGCTCAAGGCAGATCTGGAAGAGTGTCCCAG a score=5729 s mm7.chr9_random 4558410 416 + 9745104 aaTATCATTGTCCACCACCTTATCAGCATATCCTCAGCTCCTCTTAAATCAGTACATTCTTTGTTGTAACTACA---------TCTCAAAAG---CTCAGATGATTTCTGAGACATATGAC------CACAATGTTCTGATCAATTTCTTGTTATTCTCAATCTGTATTCTCCTGA----CTCCCTCTACAGTGTGCATACT---TCTAAGAAATTTCCTGAACCATTTAAAGACCATGTCA-ATATTTGGAACATGATATTCTACCTCAAAATATTCATATATAAATTTGCTTGATGGCATTCATCTACTTAATGAGGCTCTCCCCATCTCATTCCAGACATGAGGTTTCTAATTCAATGCA-----------------CATTTGCCTTGCTCTTCATTCACACTTGTAGAGCACCCACCTCAAGAACAAGGAAAGCCATCTTTACCATGATTCACTT s bosTau2.chr24 4770636 429 - 45245742 aatgccattctcccaaatcttcccaccctctcc----ctctcccatagaTGGACCTTTCTCTATTTTAAATGTGCAAATATGTTTTCAAAAGACTCCCAGATATCTTCTGA-----ATGGCAGGCTTCAGGCTGTTCC--CCAACTTCCT-TTCTTCTTAAGCT--AATCCCTTAAGCCACCACTCTCAGAGTTTGTACACCCCATCTAAAAAATATCCTAAACTATCCCAGTGTCCTGTCATCTGTTTGGAATATCGCCATATTCCTAGGCATAGCTTTCTGTAGAATTGTTTCATGACATTCATCTGCTTAAGGAAGCCAGTTCCATCTCAACTCAGGCATACAATCACTAACTCAGGCCACTCTTGGATTCTGTAACCATTTATCCTGCTCTTGAT----------------CTTGCCTTGAGGGCAAGAACTGAAATCAGTGCTTTGGTTTATTT a score=21926 s mm7.chr9_random 4771786 334 + 9745104 CCACCTCTTTGACTCC--ACAGACTGTTGGTTCCTCTCCAATGGGCTCCAGTGAAGGGCTCCTGGGCCTGGGCCCTGGGCCCAATGGTCACAGTCACCTGCTGAAGGTACGGGCAGGAGGAGGGGAGGCACAGGGCTGGGCAACCCTGGCTC-TGGGAGGCCACTGACCTGGCCCCCCTTGCTGTCTGTCTCCAGACCCCACTGGG-TGGCCAGAAACGCAGTTTTTCCCACCTGCTGCCCTCACCTGAGCCCAGCCCAGAGGGCAGCTACGTGGGCCAGCACTCCCAGGGCCTCGGCGGCCACTACGCGGACTCCTACCTGAAGCGGAAGAGGATTT s bosTau2.scaffold77168 465 338 - 805 CCACATCTCCCATTTCTCCCAGGTGGTTGGCTCCTCCCCACTGGGCTCCGGAGAAGGGCTCCTGGGCCTCGGCCCTGGGCCCAATGGCCACAGCCACTTGCTGAAGGTATGGGCAGGGGGTGGGGACCATCAGGGCTGGGGAGTGGTGGCCCCTGGGTGGCCCCTGACCCACCAGCCCTTCCCCTCTGTCTCCAGACCCCACTGGGGTGGACAGAAACGCAGCTTCGCCCACCTGCTGCCCTCACCCGAGCCCAGCCCAGAAGGCAGCTATGTGGGCCAGCACTCCCAGGGCCTTGGTGGCCACTACGCAGATTCCTACCTGAAGCGCAAGAGGATTT a score=19131 s mm7.chr9_random 4772538 652 + 9745104 atttttattattttttaaaaCAA-CCAGGATGATTATCACATCTACTCCCCCATCCGTCCAGAAAAGCCCCAAAT-TGATTCCTTCAGGGTCTGGCCTGCCCAGGC-TCTATTCCACATGTGC-AGGTTCCAACAGCTTAACCCTATTCTCT---TCCCAGTCATCTGCTGCAGGTATAGCTGTCTCATGCCCCTGCCTGCCTATTCTGGCCAGTACCCTAAGCCCCAAGATCTCCAGCCCCTGCCCCAGTATCCTTGCCTTCTGATGCCTTAAA-GTTGGGCCACAGGTCCTGCTGGGTCAGAGCCTCACAGATGCGGAGCTCCAAAAGCTCCGCTCAGGACCAAAGAGCTCTGGCCTAGGGTTCA----TCCTTTCTCCAGGTGTCTGCCC-TGTGGAC---AGAAGGCTAAAGCCTTGATCTTGGCAAACCA----------CCCCTTTTGCCCAAAGCCTGGATGCAGAGACCAGTATTTTCTGCTGGCTTCAACAGTCTCCCCTGCTGTCTG--TGAAAGGTGACCATTGTACCCAGGCCACTGGGCCTCTACCATGTTCTTT----------CAAACCCAGGTCATTACCATCCCCAGGCTGGATCA-CTGGAGCAGGCCTCCTCTCTGTCCATGTGAGAGGACCTAGG--------------GACTCTGCTCCTGTCCAGCTG-AGCAACCACCAGCCT s bosTau2.chr7 9499618 672 + 69141744 ATTTTTATTATATTT--AAACAATCCAGGACG--------------TTCCCTCCCTGCCC-------CCCCAGCTCTGATTCCTTCAAGGCCCAGCATGTCTGGGCCTCCATTCCACATTTTCCAGTTTGAAATGGCTCAGCCCTTTTTTCTCTCTCCCA--CACTTGTTGCAGGCATGGCTGTCTCCTGCCCTGGCCTGCCCTCTCTGGCCTGTACCCCA-GCTCCGGGTCCCCTGCTCCCTACCATAGTCCCCTTGCCTTCTGATGCCTTAAAAGCCAGGCCCCAGACCCCGCCGG-CCAGAGCCTCTCAGATGCTGAGCTCCGGAAGCTTGACTCAGGACCAAATGGCTCTGGCCTGGGGATCGGGCCCCTCTACCCAAGGTCCCCGATCGTGGGGACAGTAGAAGGCCAAAGTTTTGGTCTTGGCAAACCAGTCCCACCAGCCCTTTCTGCCC-AGGCCTAGGTGC-GGGGTGGGCTTTCTCTGCCAGCTTAACCCAGTTCCCCTGCTGTCCTACTGTCTGTTGGGCATTGTG--CATCTCACTGAGCCTCTGTCCTCTCCCCCATGTTGAAGATGAGCCCTG--CCTTGTCATCCCCAAGCCAGATCACCCAGAGCTGGCCTCC-CTGTGGCCCAGTGCTGGAAAATAAGACAAGGTGCAGATAAACTCTGCCCCTTCCCACCAGCAGGACCTGTTAGCCT a score=8609 s mm7.chr9_random 4925415 363 + 9745104 AGTTTTCAAAGTTGCAG--GCATTTCAAATAAGGATGCAGGGTGCATTGAGAGGTGGCAGCTGTACACAGGTATAGCAAGGAC----------GACAGAGGTGACTCT--AAAAGAAGAAATTCAGAGGGGGTGAAAGGCTGGCCTGCAGCCTGAATCTTCTAAAAAGGAAATGGATGGTGTTGGTAGATCCGGTGGCATCCCGTCTCC-CTTCCATCGAAGTCATGAATGAAGATTTATGGGAGGCTCCGTCCACTCACAGTCCCATGTGGGCTTCAGCGTACCTTCATTTTCTCTTGTCACGCACATGAGAAAGATGAGAAAGAGAAGATAT---TTTTCTACCTTGGTTTGCCTTGACGTGGTCCCTTGGGAGGGAAA s bosTau2.chr10 32724440 369 - 70001009 AGTTTTCAAAGTTGCAGAAGTATTTCAAGTACAGATG------ATGTTTAGAAATATTTACTAGCCAACGACAGAGAAGGAAAATGTAATGTGGATGCAGGAGACTCTGGAAAAGCAAGAATTCAAATAAATTGAAGGGAAAGCCTCTGAGCT-AACATCTTAGAAAAGAAAGAAACTGTGTTAGATGTTTCCATGGCATCCTCTCCCTGCTTTTATTCAAATGATGAATGAAGATTTATAGGAAATGCTTTTCGCTAGCAGTCACAGACAGGCCACCCCATATCTTCCTGTTCTTGTCCCATGTATGTAAGA-----GAAAAAGCAAAGATTTTTCTTTTCCACTTTTCTTTGCTTTCATGTGGTACCTGGAAACAGGAA a score=30029 s mm7.chr9_random 4977582 1532 + 9745104 GCCTCACTGTACCTCTCCTGACTTCCATTTCATCTCTATTTGTGAATGTCCTC---------CAGGGAGTTACATTTAAACATTTACTATTCCAAGTA-ATTCTGTGAGGTAGAATTTTGAAATGACTGT-AGAAATCTGAACATGAAGAACACAACAAATATCTTCAGTTAATACAGACAATGAAAATATGACTTCCATGTTTATAAGGCCCTTTACTTAATAAGAAATTATTTTTTGTGTGTTATTTAG-TATTTTTGAGAGGATTTTACAGTTTCATATTTATAAATCTGCTTATAAAAAAGGGAACTTATTTTACTTTTTGAAAATAAAAATTAAAGAGAAAATATTT---CCGTTGCATCACTGTGGATTTAGTTAGT------TTAGTTTA---------------CAATACCTTTTTGAAC---CCATTTTGACAGACAAAATTCGATTTTCACTGAGTAAATTTAATATATGCAGCGTTAAAATATATATT---------TTTTCCTGCATAATTTTCAAATAGT---------GTCTTTATTTTAGGATGTC---TTCCTTATTT----------------------------TAAAGTC--------------------------------------------------------------------------------------ACTGAAATATAG---------------------CATGATTTGCTCAAGATCATAATATTTATTAACACCTTGTGATTTGGTTTTGATTATC-------------------ATTTTACTACGATAATGTGCTACAAATTTGAGAATATGAAAGGTTAATTTATGAAAATTGTTACACATTTTTAAAAGCTAATTATTGGGCATCTCTTACTCATATGGTCTTATGAAGATAGATCCATTTAAATGAGTAATAATTCCCTCTTGAGAGTTCTATTTTGAAGAAAACCCATTGCACTTCTTTAATAAACAC-AGTATCATAATATTT----CCATTATTAATGCCAAAAATGT-GCATTCATTTTGGAAGAAGGGTAATAATATTCTTAGTTAAATGAGAATCCATTAACCTAGTGACCATTTTACAAATATAATTAGTCTATTATAAAAAGAAATGTTAAGATTAAGTCTGTAATTTATTTGAAGGTTATTAATAGGAAAACATTATTTATTACTGTCA-AAAAATCAATAATAAAACACTTAAGATCTCAGTAGTAATGGCATATCATTATTGATGTTTGTTTGATA-GAAAAATTGTGCTCACTTCATGTATAGAGGTCCTCTTTTCAATTAGCTTTACTTAAATGAAAATATCCCACTTAATTA---AATTCAGTGGTTACTAAAACTGTTCGTTTGTGATGTC---AACAAACCTCTAATTATTTTCTAAGAAAACCTTTACGCC-ATCCTCAGCCTCTTCTGCACTTTGCATCCTTTACAGATAGCTTTTCAGGAAAAGTCTTTAATGTCAACACCTGG-----TTTGCCCATTACTTCTCACTAATATCATTGAGCATCATATTCTATTCTAGGAAAATATTATAATCCAGCTTATAGCTATACAATTTTGTGAATTAATTTATCTTTTTGTTTAATATTAAAGAACAACTATTGAAAG---ATATG--TTATGATTTCATTCCGGATTCTTACTACTAACTCCAATGGTTTGCTTGCTTGATCTGTTTGAGGTATAGAACTTTTTTTTTTTTTTC-TGATTAGTTACTGCTT s bosTau2.chr1 41589225 1690 - 102834029 GTTTCACTATGGATTTCCTTAACTTGCTCTCAACTCTGTTTA-GTGTGTCCTCTGCTTACTTCTGGGATTCTGCTCGAAAGAATTTTTATTCAGTTTATGTTCTCTGAGACTGGATTTTGAAATGAATGTTAAGAATCTGAATATATAGAATATAATAAACATTTTCATTTTAGAAATGATAGAAGAGTGTGTGCTCTAAGCTGT--GGGCCATT---------AGAAAT----------GTAATATGTAGCTACTTTTCTAAATACTTT-TAACTTTATATTGAAATAGATATTTATAATAGAAT-AATGCATTTTTCTTATTTCCAAAAAGATTAATAGAAAGTTTATTTAAATGATTACA--GTTGTGAATTTAGTTAAACTATTATTAGTCCAATGACTGAGATTTCTCAATGTTTTTTTTTGCTATCCATTTTGACTGACAGAATACAATTTTCACTGAATAAGCTTAACTTATTCAGTGTTAATATATGTATTAAGTTTTACTTTTCTTACAGAACTTTAAGATACTTTATGATTGGTAATTTTTTTACATTGGCAAATTCattatatataaatgaaataattaatttattaaaaataaaCTCCGGGAGTTGGTGatggacagggaggcctggtgtgctgcagtccatggggtcacaaagggtcagacatgactgagcaactGAACTGAACTGACATACAGGAAGTTGTCAACAAGTTACAAAATGACTTGTTCAAAATC---ATATTTGTTAAAAATTTGTATGTTGGTTCTGAATATTTGTTTTTTAAAGATCTTTATTCTTATTTTAACTATATGCTACATCTCTGAT-ATGTGAAAAAATGAATGATCAAAAATGTCatataattttaaaagttaattattgaacattttttattt-tatGCCTTCATCCTGAGAAATTAACCTGAA--ATT--TATTTCCCTCTACACAGTTCTATTAAAAAAAAAACACATTTTACCTTTTTAATAAACAAGAGAAACATAGTTTTTTGCCTTATAATTAATGCTAAGGAGGTAAAATTAGTTTTGGAGCAAGGGCAATAATATTCTGTGCTAAATAAAAAGGCATTGACCTAGAGACCTTTTTGAAAGtataattaatttatc-ttaaaagaaatattatattaGAACCTGCAATTTCTTTTGA-GTTATTAATATGAGAGCATTATTTAGAATTGTCAGGAAAATCAATATTGAAACACATA----CTAGGTAAAATTTATGTATCATTATTAATGGTTATTTGATAGGGAAAATTGTAGCTTTTACATATATAGGAATCTCAGTCTCAATTAAGCACACTTAAGTGAGAAACTTCAACTTTATTAAGTAATTTTGTG----CCCAAATAGCTCATTTTTTATAGTTGAAACTTACCTATAACTATTTTTCGGGGAAAGTCTTATCCTGGTCCATAGTTATTTCCTCAGATGGCATCTGTTCAGGATGGGTATATATTCAAAATCTTTAATGTCAAACCCAGAGTCTCTTTGCTTGATTTTTTTCTC-AATAACATAGATTATTATATTCCATTATTGGAAAATTTTATAACTGAACTCATAATTGGCTAGCTTTTGTAAATAGAGtatttttataattaatattaaaGGAGAAATATTTAAAGGATACATGGTTTATTGATTC-TTCTGGATTATTGGTACTGATTT-----------------------------------AATTTTTTTCTTTTTTTCGTAATTATTATTTGCTT a score=4457 s mm7.chr9_random 4980014 270 + 9745104 aggaaAACCTACTTTCTTATGGAAACACTTTTGTTCAGCT-----TCTCATTGTT--ATCTTAAAATAAAGAATATACACAGAATTGAATTTACTTCTATGTTTATTGCTTAAAAATCACTATAATTAATacacacacacacacacacacacacacacacacacacacaTATTACACTTTCTTCATTTTGAGGATATATAAAAGAAACTTTGAACAACTTAATTAAAAACTTCCTTCCTAATTATTTAAAAAGCTTACAACA----TAACAGACTCTAGCT s bosTau2.chr1 41594544 247 - 102834029 AGATAAGTCTATATTCTTTTAGAAATACTGTACTGAAGTCCTTGGTCTTATTATTTCATCTGAAAATGAAGAGCGTAAGGAGTATGAAATTTGCTTCTAT--TTATTTTATAAAAAAAGTTAAAAG-GGTAT-------------------------------CATCAAAATTATAGCTTTTCCTTTATGAGCCCTCATAGGAAAAACTCTGAATAACTTTATAACAATTTACTGCCCTTATTAGTCAGAAAGCTTAAAACAATTTCAACCTTTTCTAGCT a score=5566 s mm7.chr9_random 5097660 386 + 9745104 ATTGATAATAGGTTATTGTACTTACAGACTCACAGACTCAGAGTGAAGATGCTCATTCATCTTGGGGACATGACAGAGCATCATTATCATATATTCCTCTGCCTGTGTTTCAGGTTTACAGTGAAATTTTGTTTTAGT-----------ACATTAATTTGAAGGACCATGAAAATCTTATGTAAGATGGATCTAGTGCCACATTTCTGTAACCCCAGCATTTCGGAGATGAAGGCAAAAATCT---------TGCAGAAAGTCT-------------------------------ATATTAGAAAGTAATTATAAAGAGTAAGGTTTTTTTTTT----------------AATTCCCAAGTTTTAA-TTTATG-------CCATATTACAAT---------------AATTAAAAAGTCACTTTACCAAAGTACTTT----CTCATTTGTTATGATTAATTTTTAGATCATTTTGAGTTT s bosTau2.scaffold2637 5170 451 + 106644 ATTATTAATAGGTTGTTATATT--------CATTAACTCAGAATCAAGGTACAAACCTACTTTGGGGAACTGGCAAACTATTATAACTGTAGATTCCTCCATC----TTTCAGTTCTACTAAGAAATTATGCTTTTTTCAGAATATTTAAAATTAATTTGAAGGTCAGTTACAATCT--TGCAAGA--AAGTTAATATCTTA-----------CCAAAAACAAAGAAATGAAAATAAAGATTTAAATTGCAATACAAGTAGTCTTTCATTTGCATGTCCTATCTGACAGAATACATTATTAAAGAACATGCATTGGAAAAAAAGCTTTTTATTTCAAAGCTTATAGAATGAATT--TAAGATTTAACTTTATGTTGTTACCTATACTAAAATCACTATAAATATGACAGTTCAAAAGTCATTTTATTCAAGTTTTATCCAACTCATTGTTTATAATCAATTTTCAAATCATTACAGATTT a score=3030 s mm7.chr9_random 5100770 109 + 9745104 CACTATGAATCTTCCTGACATTAGTAGAAGTAAAC--------AGACAAAGCCCAAGTGAGAGTGATCATTTAAGAAGCCTATGAAATTAAGAGAGCAGCAACACTATCCTCCCTCA s bosTau2.scaffold2637 7855 113 + 106644 CACTATGGATTCTTCTAAAACCAGGTGGAGAGAAAGTAGGTTAAAAAAAAGCCCAAGGGTGGTTGACCTTCATAAAGGCCTATGAAATTA----GACATCAGTGTTATCCGCCTTCA a score=7424 s mm7.chr9_random 5100931 385 + 9745104 GAAATGAAATCAGAAAAAGAAATATTGACTCTCCTTTGAATCTTTTAACT---TAAATACTCCGCAAGTCACAGTCAGATATA---AGGCCACTAAATT-----TGTATTAGTTACCCAGCCAAGTATTATAGAG-TAGTCTGTTTAAAAATAATTAGGACTACAACTATTATGtattttttaaaaaacataaaattaaaaaaGAAAAATGATCAAATTTAAGAAAAAAAGGTTGACATATACCA--GTTGTATTGTGACTAGAAT----TTCTTTGAGGCATGA--CTCAAAAATAT------GGGAATCAGATTATTTTATATTCAAAGAAAGAAAACCAGCAGAACCTATTGTCAATATATAAGGAA--CACTCTGAATAATGTCAGTTCTCTAAAAAGGAAAGAAAAAG s bosTau2.scaffold2637 8225 365 + 106644 GAACTGAAATCAGAGGAAGAACAACAGACCCTTCTTTGAATCTGTTCACCGAGTACCTGCTCTGCCAGTCATGGTGGTTTTTGTCCAGGGCACCCAGGTCCTGCTCTATGAG------AGACACGCACTATGGTGACAGTCTGTTCAAAAGTCA---------------------ATGTGTTCAAGAATACAGAGACAGCAACAAGATAAGA----------GACAACAGGATATATATGTACCACAGTTGCTCTGTGACTATAATGTATTTCTTTGAGGCCTGAAACTGGAAGTTATTTTAACAAGAACTGAATCATTCTATATGCAAAGAAAGAAAGCCAGCAGAACCTATTTTCAACATTTCATGGAATCACACT-----------GTTCCAAAAAGGGGAAAAGGAAAG a score=24321 s mm7.chr9_random 5103529 1650 + 9745104 ACATATTTGGGCATTTTT--CTAGGTAGAACAGACTC-CTACTGAATGAAATACTTTCATGTAAAGAGTATTGGAGAATTAAGATGCCCACATATTTCAAACCATTAAAA----------TCCCCGAAGTGTAT---TATTAAGATTTATTTT-AGTAGTTACTTGGTGAAAACTTTTCCTACTACTGCAGCACTTG-----TAATAAAACTCAAAACTGAAATGTTTTTAA-TGCACAAAATGTTCCTTTCTTTAACTTTGGATGAATATGTCTAATGCTTAAAATAAG----------------------GTCAAGTTGTTTGCTCTC-AGTAGAGCGTTATAATATCTTTTATGAAATGATTATGGCAAATCATTAAGAGTTTGGAACAAATGGTTAAAGAAAGGTTACCTCTGACTCACACCTGGTAGGCTGCAGTATTAATGTTCTCAATAGTTAAGAGATTCAGTAAATTACTCAGACCGAGTAAATGAACCATTACCCGTG-------TATACTA-----------------------------------------------------------------------------CTGGGAC-----AGTCAAAAGCCCTG----------------------------------------------------------CCAGCTATGACTTGCTGTT--------------------------------------------------------------AATTTTTCATCTTAATATATGTAGGCCTTCATTTTTTTAAATAATTTAAGAAAATCAAGAACAGTAAGTTCAATCCAAAAGGACTATTATTCTCATCCAACTGCTAGAAAGGCAACTCAGAAGAACCAGTGAATAATAAATGTCAATAATGCTCACTTTTAATGAGTGTACTAGTTCAAACTTTGACTTTTAATAT----ATTACTGCTGAAAATGCCATACAGATTTACTTAATGATGTAT---------ATTTTTTTCCTATTCATAGAACATCTCTCATGGTTTCTAC--ATTATGCTTTTACCAAATATATATTGCAGCGAATTTGT----ATGTATAGATCTCTGTGCAGTCAATGTCTTCTTACTTCTT--------ATGCTTCCTCAGTATTAT------------TCCTACCCCAAATGGCAGAAGTCAAAAG-TACGTAAGCTGGAGCAGGACCAACAGCACTAGAGCTGCTGAAATGTCTTACAAAGACAACAGGTCTCAACTCATACTTGACTCT--CTCTACAGTCCTCATCTTGATAATCCA-TGGTCCACAGTTTTTGCAAATGTTCCACCTAACA-AGGAGC------------------------------TCTCGTCAGAAACAAAACA-----------------------ACACAACAA------------TGCAG-----------AGGCCGGCTCACCAAGCCA-----------------------------------GTTGTTTAATGG----AAGATAGTGG---------------GCATTAACAGCCACTTAGGT--------------------TAGAATCAGAAGATCAAAAACATGATTCCAGTT----CTAACAGTTACTC------------CCAA--------------------------------------GCAAAATAAACAGTCT--CAGACCAC--------------AAAAAGAAAGGTTACCTCCAGAATATTTTTCTCCAAAA------AAAAGAGAAGGACGTGTATATAGAACA--GATC----TAAAAACATAGAA------------TTCCCGAAAAGCATCCCTGCTTT-AGTACTCAGTGAAGTTGAAGAGATCCAGTGGCTCACTGGATCTATTTCTTTGACAGATGTTCACAGCATCTCCTAATTATAAAAAGAG---------------AACCAAGTTCTTTGAAATCATATTATATGCCATAGTAAAA------TGAAATGGGAAACATTTGGAAA--GTTTTCATTTCATACTTTTTATTTCTACCATTTGTTTAATTGAACATGCTGTGGTAAGTAGAGGATATAAAAATGATTACCTGTTAGATAACTAGAAGTACAATAACACAC-CTTTAGTGAATCAATTACTTTG-----------GTTATTCAATTTTCTACTCCTGATCATTTTCA s bosTau2.scaffold2637 10807 2174 + 106644 ATATATTTGAGTCTTTTTAATAACGTCATAAAGAGTCACTGTCCATTTGAATAACTTTTTGCAAGCATTAGTATAGAATTAA-ATGCCTAAAGACT--ATACAATAAAAAGGCAAAACATCTCTTGAATTGAATATTTAACAAGATTGATTTTTATTATGTACTAAATATAAACTTTTTGTTATTATGTAGGACTTAAGTTACAATAGAAATCAACAGAGAAGTGTTTTTAAATACACAAAATGTCCCTTTCTGCAACTCTGACTGAATATGCCTAGTATTTAAAATAAGTCAGCCTAATATTTAAAGTAAGGTCAAGTTGTTTGCTCTCTAGTAGAA-ACTATTACACCTTCTATAAAGTAATCAAGGCAAATCAGGAGGA-CTGAGGACAGGGAGTTAAGGAAAGGTTACCTCTGACTCACACCTGGTAGGCTGTTATATTCATTTTCCTGACGT---AAATATTTGGTAAATGAATCAGATTTACAAAATGAACAGCTAGTTTTGAAATGCCCATGCTAAgctgctgctaagtcacttcagtcatgtccgactctgtatgaccccacagacggcagcccaccaggctctgctgtccctgggactctccaggcaagaacactggagtgggttgccatttccttctccaatgcatgaaagtgaaaagtgaaagtgaagtcgctcagtcttgtctgactcttcacgaccccatggactgaagcctaccaggctcctccgtccatgggattttccaggcaagagtaATTCTTCATTTAAATATATGCAGGCTTTCTTTT-----AATAATTCAAGAAAATTAGGA-CAGCAGGTTCAACCCAAAAGGATTATCATTCCAATCCAACTGCCAAAATTAACACCGAGAAACCTCAGTGAACAATAAACATCAATCATACTCATTCTTAATGAGCGCA--ACGTCAAACTTTGATTTTTCACATTTCCATTACTACAAAAAAAACCAT-TATTTTTACTTAATGATTTATTATAAATTGTCTTATTTTCCACTCTTAGTAAATCTGCCAAAGTGCTAACATATTATACTTCCACAAAATGGATATT----TAAATTTCCTGCAAAGCACAACTCTCCACACTACCAGTAACTT-TCACTTCTTAATACAAAATAGTTACTCTGTCTGATGGTCCTTTCTTATTCTGAGCCAAATGGAAGAGGCCAAAAGATATGCAAGTTGAAGCATCAACAAAAACACT---------------TCTTACAGGAAGAACAGACCTGGATTTATTCTTGACTCTTCCTTTAAATCACTGATCTCCTTAATACAGTGGTTCATATGTTTTCTGAGTTCCCCAAAGAACACAAAAGCAATACCTGGTAATCTCACCCTCTTTTTATTTTttggccgcaccacagcatgtgggatcttagttccccaaacacacactgaagccgtgccccctgcagtggaagcttgcagtcttacccactgagccaccagggaagtgccCATACATGGTAATCTCTCCATCACTGAGTAATGGGGAAAAGGAAATAGCAAATTCATCAGGCAGAAGTAACAGCATTCTAAATCAAAGAAATTTTGTATTAGATGGGATCGGAAGTCCAAAAGCTCTATAAAAGTTAACATTAACAGTCATTTAGAAATTAAAGACCAAAATCAAAGAGGATTTTAAACCCACTACAGCTACAGCATGCAAAATGAACTGTCTTACAAGCCACACACACACACACAAAAGGAGAGAAGTTGCCTCTAAACTACTGCTCTCCAAAAGGAGACAGAAGAAAAAGATAAGTACATAAAATAACAATCTTCATAACAGAATCAAAATGCTGTCAATTTTTTTATACACCTTCCCTGCTTTGAATATTCAATCA--TGGAAAAGATCCTCTAGTTCAC--------TCCTTCTGAAGAATGCCTGTACTGTTGCT--ATAATAGGGAGAGCGCCAGCGGAAAGCCAACCAGGTCCTTAGAGGTCTTATCACACTCCAAAATAAAAGCTTTCTGAAGTGATGTGAGTTTGAAAATTGTTTTCATTTTACACCTTGCATTTGTTTCAATTTTTC-----TACAGGCAGTGATAAA-GCACTATGTATCAGTTAGGCTTTGTCACAAAGCTAGAATTCCAATAGCATGTGCTTAGGTGACTGAATTACTTTGCtttttttttttttttttaatttcttgattcttgtctttttta a score=28390 s mm7.chr9_random 5107722 1691 + 9745104 AGATCATTGAATGTGCGTCTAAATATGTGAGGAAGTACAAGAGAGT--ATTCTATCAAATCAATGACGTTACAATTTAGTCATCTTTCAAGTAAGAACAAGAAAATTGGAGAAACAAGACAGAGTAGATATTCACTGTAATTTACTAAAACATAA---TCACATTTTCTTCACTGT-----------AAGATGAGGGGGGGAAAAGTAGTCATTAGAATCCATGAAGAAAGACTATGTG-GATAAATA-TTCTGCAA----CTTGAGGACA-TGAC---CATGCTTTAGCCAGGCTTCACTGATGGAGGCCTCTATAAGAAGCCAACCTGAATACTGAAAAAAAAATTACACAGTATACTA------------CTAGAATAGCAGACCTATAAAAGAAGATTCAGGAACCAATTTACAAACTTAGTACTATGTAAAACAAAGGTCAAGTAAAGTCTGT--TTCTTAAACCCAACAGACAAATTCAACTTCATATAAAAACCTAAATACACAGCACTGGAATAAAGAACCCAGTAAAAACACAGGACCAATTTAAAATGATCTCTAACCTATCCTGTGTGCTCATTCTCACAATTATTAATGTAAGATTTCACTATGATTGTAATCTGAGGAATGCAGTTGAAAAATACGTTTTGATCTCAGTGAACTTGACATTTACATGTATGTTAGACTATATGTGCACTGATATAGCTTCTACATAAACACCATCCAGGATTCCATGAGCATTATAATAAATACTCTCTGGTAGAATTATTGCCAAGTCAACATACTTTTTAAAAAAT---------TCAATTAACACAAATCACATTCAATAAAGCTTACTGTAAATTACCAATCCTATTATTTCAACAAACACATTTAAAGCA-GAAAACTATAGGGATACTAAAAAGATAATCAGCATAGCTTGAAGCTAAGTGGGGGGGGGGG---GTGCTTCC--CATGAAACAGGGCTTGAAATAGTTTTCCTTCACTTCAGAATTAAACAAAAATAAGACAAAACATAACAAAAACCCTACACTGAAAACAGCTAGCATTTGTC----AAGTATA--------------------GTTATTTAACTCTCTGAACAATCCTTTGGGCTAGTGTTATCATTAGTCCCTCTTGCCAAT-------CTAAAAGGCAG--------TATTTCTTAGGAGTCATAGTTTATAAATAACTGAGTTAAGATCTAAACCCTTGACATTTTACTCCCGAGTCAACATT---AACTATTTCCCTATATTGTCTCATAAAAA-TAAGCTTCTCCATGTAATAACCTGAAAAGCCATAA--------TGGGACAAAAAAGAAAATTTCTCATAAA-TATCTAAAAGCTATATTAGCTTAAATAAGTGCAAATAAATAAATAAGActgtaaag----agaaaaatagtattttaggcattatagaccatggggtctttgtcttacctagtcaaccatt----------gctgaagtctaaaaagaatcattagccaaacagagcatggctgtgttccaatcaaact----------------------------------------------AATTTGTCCCACGGATGTACAACAGTTTGCTGACCCAAGGCTAACTCACAACCAAAAACATATTTTAATATTTCAATTATACTATAAAATGTAATAATTCCTACATAAATTATACAACATTAC-TAAGAAGACCT----------------AAGAAATGTTGAGGTCTTTCTCTACAATAAATACTTCCATCTATATACAGTAAGAATTTGTATGTTTTTAATTATATTGTTAAAACTCATTTGGTTTGGTGTTAACTAACAA-GCTTGTAGCTTTCC s bosTau2.scaffold2637 19848 1713 + 106644 AGATAATTAA---CACATTGAGATGCTTGAGGAATTACAAAAAAGATAATTCTA------------CTTTACAACTTATTTTTCTT-CAATTAAGACCAAAAAAATCTGA-AAGCAAGGTA----------TGACTATAATTT-CCAAAACACAAAAATTGCATTTTTCTCATCGTTAACAATAGCAAAAAAACAAAAGGGCCTAATAGCCATCATAAGGCATCAAGAAAGCACAAATATGATAGATAACTCTGAAAACATCATGAGAATAGTGACTTACTGGTTTTAGACAAGCTGCTCTGAAAGGAACCTCCAAAAGTAAGCAACCTGAAATCTGTAGAAAA--TTATTCATTGCTCTAACGTATCTGCAGTTCAAAAAGCAGAACTAAAAA----------GGAACAAGGTTACTAGTTTAGTACTATGTAAACCAAAGATCATGTAAAGTCTACAATATTTTAAATCAACAGACAAATCCAACTACATG----------------CAGCAAAGTAGTAAATAAACTTGAGTGAAAATAGGGTCAATTTCAATTTACCTTGCATCAATTCTGTGG----------ACAACTATAAATTCGA-ATTTCATTATGCTCGCTATCTGATTAAAGCAGATCAAGAATGCAATTTGATCTCAGTGAGTTTGACAACCAGATACATGAGGTCTCACA---GCACTGAAAAATTCTCTATTTAAGAGTCACTCAG---TCCA--------ATAACAA-----CTTGGGCTGAATT-TCATTAAGTCAG-----TGTTTGAAAAATAAATATAGATTAACCAACAGAAATCATATTAAATAAAATTTACCACTAACTAGCCTTCCTGTGGTTTGGAGAAATATCTTAAAAAAAAGAAAACTATAGCAGCACTAATGA---AATCAGTGTAGCCAGTGACAAAGTATGAGGGAGGGTGTAAACTTCTGACATGATGTATGATCTTGACCATTTT------ATTTCAGATTTCAAAGAAAA---------------AAAAAAACCTGCAGTGAAaacagctaatatttatttactgagtatctgctatacactagacactttattattgaattctcagaacaaacctttgagttagtactattattagccctactttccaaaaagggaactaaagggaagagaagtaatattcaccaagtcacacaattgacaagtgactgaggcaagatc-aaactcacaaagttttactccagagtctatgttgttaatcattccattatactatTTCATAAAAGGTAAGTTTCTGCGTTAAACA---TTAAAAGAAAAAAAAAAAAACTGAGGAAAGAGAAATGACTACTCATAAAATATCTGCAAGCTCAACTCACTcaggggtaggcaaactttt---------tctgaggggtcagataataaatatttcaggttttacggcccacatagtctctgtcacaactacacaactactcaactctgctactgcagcc-aaagacaaccataaacaaat--gagcacagctgtgttccaataaaactttgtttaaaaagttaaactttatttacaaacacaagtaataggccagatttgtctcagggg----ccatagtttgccagcccAGGG-TACTTCATAAGCAGGTG---ATTTTAAAAGTTTCAGTAGATTC---------ATACCTCCTATACAAATCA------ATTACAGAAAAAAATCTGCACACAAGCTGTAAGAAGTAACACCAAGAACCTTCTCAAGGGCAAGTGGTTTTATTTTCATA----AAGATTTT---TACTTTTAAATATATTGCTATAATGCACT-GCTTCAGTGTCCAGAGACGCTGTTTGCAGCCTCCC a score=4839 s mm7.chr9_random 5109413 155 + 9745104 TAACACCTGTGGGAATTTATAAATCCCAAAGGAAACCAGCAGCACCAGTCCCGCCACATGGCCCCAGAACAG-------AAA--------------TACCAGGACTGCTGCACAGCCTACATTTGCTTCTGCCTCACATTTATTCCTCATCAGCAACACCCATTGCTATCCAGGAG s bosTau2.scaffold2637 21752 167 + 106644 tgACACCTCTAGGTTTCTCTAAATCCCCAGGGGAG---GTAGCACAGGT---AGCACTTTTCCCAAGAACAGGTTTAATAAAGCCACAGCCATCTGTACCAGGGCTGCGGCACAGCCTACATTTGTTCCCTGCCCACATTTACTCCCCATCAATAGCACC---TGTTCTTCTGGGG a score=5645 s mm7.chr9_random 5109750 326 + 9745104 agtaagtttcaggccagccaagctacacagtaagacctcagtttgaaaaacaaaca---aCCAAAGTGT--CTATGAAAATTCAACCCTTTCTGACAC------TCTGGCTGTTCTCCTGGTTACCACATAA------------AAGGGTCATAA--AGGGGAATAAGGTTTGTTTTCTGTCGACACAGATTTCCTAGGTTAGC---AGTTATAAACAAGA-----------------------------CCCAACTCTTTCTT------------GTGGCTAACTGTGTAATATACCTTGACTTATTACCTTTC--TCAAGCTTCAAATGTTACCACTCTAATGTAGACTCTTACCCAAC-------------TATTTTGTTTCCAAA-AATTTTAATAATTTGCACCTT s bosTau2.scaffold2637 22007 386 + 106644 AGTGAATTTCAG--TAG----------------------AATGTGTAAATTAAACAGATACAAATGCATCACTCTGAAAATTCAGCCTTTTCTGATGCTGACTTTCTGACTGTTCTCCTCCTGGCCACTCAGGCAGTTAGGTCCAAGGAATAGAAACAGTGAGCAAAGGTCTGCCCTTTGTTCTCATAGACTCCCCAGGCTAACTGAAGTTATAAACAAGAAAATGGAACTTTCTGTGATTCGTCTATCTCCCAACTTATTCTTATCTTACCTCTCATAACTAAACTTGCAATGTATCTTAAATTATTCTCCTTCCTCTCTGATTCCAACACTACAGCTCTAATTT-GACTTTAACCCACCTGCTATTTATTAATACTTGGTTTCCAAATGTTTTTGATCACTTACACCTT a score=10845 s mm7.chr9_random 5110422 440 + 9745104 GTAACTCAACATATTTTAGCAAATTATTAGAAAATTTGG-TATTCACATCTGTCATTGGTTTTGTATTTGTACATTTGGAAAGCAAACTTTTAATGTAAGTATAATATATGCAACTATATGACT----TTCAGTTTGAACTATGCCTGCCAT------AATGAAAGATGAAACAAGTT---------CCTACAGCACCATTCATTGCTAAAACTACTGAAAAAGAAGATCT--TTGAGTTTAGCTCTCATAATTGTTTCCCAAGAGAAAAATAAGTAAA------TAAATGACC--CTCTCAACTGGACTCCTTCATAATAGAATCTTAATACCACTTTTCAT------CAACTATAACTTTCACAGAAACAGCTGTACTTGATAAAGATTTTGAAA----ATGTTAGATTTAAACATAACTGGACCTAATCAATCTTTT-------AAAAATAAATTACAAGTCCAAGACCGAAATCATTTTTATA s bosTau2.scaffold2637 28152 471 + 106644 GTAGTTCAATATCCTATAACTTGTTAGCAGAAAACTGAAAGATTCAAGTCTCCTATT----TTACATTATCACAAAAGGCAAGTGAACCTTAAA---AAGTTTAA-ATA---AACTACATGACTGCCTTTCAGTCTGAGTCTTATCTACCTTGTACTAAATGAAAGACAAACCAAGCTGGTAGCAATACTTTAATATCATTCACTGCTAAATATGCTAAAATAAAAGATCTCTTTGAGATCAGCCAGTCTCATTGTTTCCCAAAGAAGAAAACAATGACACTCTTCAAAAGCCCATTTCTTAAGTGAA-TCTTTCATAACAGAATCTTAATATGGCTTCTCATTTCCATCAACTACAACATTCAAAGCAGCAGCTAAACTTCATACAGATTCTACAACTTTATTTTAGCTTTGACCAT-ACTGA---TTATGAATTTTCTTCTTTAAGAAAGGAAATTACAAGCTCAAGATAAAAATAATTTTTACA a score=8032 s mm7.chr9_random 5112574 367 + 9745104 AGAAATTAAAAGCAATGCTTAAGGAGAAGCCACAAAACATTTTGCTTCCAAAATCCTCAATCTCAAAATATGGCATT-----TCTCTGCCATGTTTCTTACATTTCTTACTATCACCCTGATTTAAACTCTTAAAATGGGAAATAAGTAATCATGTCAAAATTCTTCAAAAACATATAAGACATAGGTCTCA----GCAATCATTGCACTTTGCCAATTCAACTGAAGTTCCACTTATTA-ATCTGGCTAATAATTCTAGATAATCTAGGAATTACTATCAAATAAATGATCACTCTGCACATAAAAAAGAAGCTATCTGCTATTAATCATTTAAACATGGACTAGACTGATCTATTGTAAATGACTTTATAGATAA s bosTau2.scaffold2637 31797 346 + 106644 AGAAATCAAAAGGAATGTCAGAGTAGAATTCACAAA-CATTTTGCCCCCACAAT------------ATTATGCCATTAACACTTCTTTTCATGTTTCTTACATCC---ACTATCACCTCAGTCTA---CCTAGAAATGGGAAATTATTGTTCCTGTGAAAACTCTTCCATACCATATTAAAAGTGGGCCttactattcaatcaccacactctggc----ccactgagccccaactgaatatatcagtcttttcaatacaga-gatctagg--ctgccacc-accaactaatcagttagcatacaacaggaaacctacttgctaaccttgATTTATAT---GATCAGACTGATCTACTGAAAATGG-TTTATATTTAA a score=30114 s mm7.chr9_random 5114013 899 + 9745104 ctccaTTTGGAGTTCACTTACCGACAGTGCTTCATTCTCTTTAAGATCCAACCCAAACACATCCCGCCGCTTCACTGTGAGGAAGTCAGCATCAGGTCCATCTTCATCATC---ATCATCTCTGTTTAAGAACTGCACAGAAACTTCCTTGACCTTCTGTGCCTCCTCAATACTGACAACAGATTCAGTGTGAGGCTCTCTTGCTTTTCCCAGATGATCTTCCGTCTCTTC---GTCTTCCGTCTCTTCATCCTGTTCTTCGTCACCGTCACCACTAGCCAGTCTGTGTTCTGTCTCTTCCAGTCTTTCCCCACTTTTGTGAAGGACGGACATCTTCTCACTGACATAAGCTGGAGATTCGTCTGCTTCATCGTTGGGGAGGGAGGGGGCCCTGGGCGGAACTGCTTCTGTGACTGGATTCTTTACCAATTCTGTGCTGGGCTGCTTCTCCAGTTTCTGAAGAAATCTTATCCGCGGTGCCACAGCAAGACCAAGAGACCTTCAA-AAATGCAAAGAA---------CAAAAATAGTGATGG-TATGTTTGTGG---TATTATGAAA-GTTTCTCCACAGATC---TATGTCCAAGGCTTTTTTTaaaaaaaaaaaaaaaaaaaaaaaaaTCCCTCTAAGATACA--TCAATTCTGACAGATTAAATGATCCAAAAGACAAGCCAAAATGAACTGAGTACTTGTCCGGAAAATGTCTTAGACACCTCACTCCCCTTCCAGAGCTGAAATAGT--ATGAAATAAAGAGCACTCAAATAGAAACAAGATGAACACACTCATGTACCAGACCCA---ATTTCAAATCCAACT--------CTCAGCTTCCTCA-----CAACACAGAACAGAGATGCC------------------------------------AATTAACTGCGTGAAGGTACTTTGCAAAACATAAGCTACTGCAT---AAACTGGAAAAGACATGGCTGAGG s bosTau2.scaffold2637 49056 941 + 106644 CTCCATTGGAGGTAAGCTTACCTGCAGTGTTTTGTTCTCTTTAAGATCCAACCCAAACACGTTGTGCCGCTTCACTTTAAAGAAGTCAGCCTCGAGGCCATCGTCGTCCTCCTCATCGTCTCTGTCCAAGAACTGCGCGGGGGCTTCCCGGTCCTTCTGGGACTCTTCACTGCTAGGGACAGACTCAAGTGGAGATCCTTTTGCTCTTCTCAGTTTCTCGTCCATttcttcttcatcttctttctcttcttcct---cttTATCACTAATGCCACTATCCGGTCTGTAACCTGTCCCTTCTGGTCTCTTCCCACCTTTCTGAAGAATAGACATTTTTTCATTGAAGTAGGCTCTAAATTCTTCCACTTCATCATTGGTCAGGGAGGGAGCCCTTGGCTCAGTTACTTTATTATCTTCACTCACTACCAGTTCCTTGCTGGGTTGCTTTTGCATTCTCTGAAGAAATCTTATCCGTGGTGCCACAGCAAGACCAAGAGACCTTAAATATAAGCAAAGGAAGAGTTATCTCAACACACTGATGGTTGTGTTTATGAATTTATTGTGAAATGGTTCCTCAGAGTTCAGATGTTTTAGAGTTTTTTTTT--------------AAAAGAAAATGTCCTTCTGAGATATAACTCCATCTTGACAAGTCAGGTGATCCAAAAGAT------------ACTGAATACTTGT-CACAAAATATTGGAGATGTCTGTTTTCCATTAGGTGGTTAACATGATTAACAAAATAAAGAGCATAAGATGAGAAAAAAA-----------CAACTACTAGATCTATCTATTTCCAGTATAActctctcagcctcagctttctcaaatattaatacaagataaaaatacctaccaggcctatctcagttgttgtaaatatctgatgcactaactatatgaaaatactttgtaaaatATGtttttatttatataaaaatataaataCTAAAGCTCAgg a score=5139 s mm7.chr9_random 5115312 376 + 9745104 ATGC-TTataaataaactaagtaaataaataaat---------aaatGGCAGCTTTATCCACT---TTTTTCCT---ATATAATGCACAACAGCTGAGAAGTTCcatattgaggagcacaagctcagaaacagaactgctgaagttcaacatgcacaaatctgtcatttaacagtcgtgtgatctcaggcatagtc--tcctctctaga---cagttatcttatccgaaaaatggaaggactgagaatgtccacctaacagaatcatgttCGAGTTAATAAACAGATACAATGAAGTTAAAGTAACGAAT-GTACAATAGTGGTAACCTTTCTGCCATTACTGTCTGTATTACCTTTGTAACAGGAGGGTTGGGACAATAAGTTT-GTATATACTAGAA s bosTau2.scaffold2637 50354 381 + 106644 ATGCATTGGAAATAAGCT--TTTAATAAAAAGCTAACATTACAAAATGG-------ATCCACTGCCTTTTTCCTAAGACATGATTCACAGAAATTGATGGgtgta--gttgtaaaacctggattcagaaacagaactattgaagttcaaac--cctggctctgtcagctactagctgtgtgatcaaggacataattaaacctctctatacctcagctctcttatttgcaagatggcatgac-aagagtactgacattgtaaga-cttgtaaaaatgagttcatagatacaatgcatctaaaacagtgcctagcacataTGCAGCCACTTCTGAGCACT---TGTCATTATCACTGTTATAGGGATACAGTTAGGATCACAAATTCAGCATCCATCAGAA a score=8884 s mm7.chr9_random 5116546 559 + 9745104 agaaaggaagaaaACATTAAAGTTCACACAGAATACAAAAGTAACTAAAAAGCCTAACCTTTGGGTGATATT-AAAAATGATGAAACTAGGAGCT-GGTAAATAAACCTAAGGCAACAAGAGCATGTTATCCATGACATGTGGTTCTCCACGCATTACTAAAACAGTAGTGCTGTCTAACACTGCCCTGCACTGTTATCTAACA---CAAG-GATTTTAAAATATTACAACTGACAGATTA--TACTATACTAAGCATATACTCTAACAC--AGAATAGAAAACAGCAGCTTACCAAGGTCAATTGTTTTGTTATGAAGGGGAAGTGGAAAGGATACAAATATATTGTGCTCTCAGGTATGAAATCCTCaaataaaatattttttttagttttctttataaaacttaatttGCAAGAAAAGGTACTCAAATTCCTAGAAAACAAGCTAAACACAGAGGACTTGGCT-----AAAACATACTTTATCTGGGA---AATCTAAGATAGACATT-GAAGTATGTTGACGCTCAAGTGTACTTCCAAAAGATTTTGTCA-------------AGATAAGACTCCCTCGAATAGAG s bosTau2.scaffold2637 50914 487 + 106644 AAAGAGAAAACCAGGATAGAATGTCATAAACCACAAAAACTCAGCTAATAA-TCTAAACCATGAATCATATTCAGAAATTTTAAAATTAGTAACTTGGTAAA-------GAGATAAGAAAAGCACGTT-TCCATGGCATCTGATTTGCTATCCATTACCTAAACAAAAAGTCAGT-------GACCTTACTTTGTTATCTTGCAAATTAAGTGGTTCTAAAATGTTATAACTGACAAATTACCTGTTATACTGAACTTGCAATCTAACATGAAGAACAGAAAATAGCAGCTCACCCAG-----------------------------------ATACAAGC----------------------------------------------------TTTTATTAGACTTAACTTAAAGGTAAAGGCACTCGAATTCCTGAAAAGCAGGCCAAATACACAG-ACTTTGCTGTGAAAGTACATATTTCATCCCAGATTGGATTTCAAGCTGACATTCAAAGTACGAGTAACCCCAAGGGCGCTTCTCTAGGATTTTGTCACTGCTTTTCCCACAGGTAGAACCCCACTGAAAAATG a score=10193 s mm7.chr9_random 5117253 334 + 9745104 GAACTTA------CAACTATGGACCTTCCTGTCAAC--AACTAAATA-TGAGCTAATTTTCTAGATTTCATTTAATATGCTTCTCTGCAAATTTTCAATGGACTGTTCTAAAGCAGAATAA-----TCTAACCTAGGGCTCTTAGA-GAATGCACTATGGACAGTCCCTCTAGCTTT-----------ATTTCAGCTATGTAATCAATACTTACAGTGCATATTCAGTAATAGGTAACTTGCTCACATTAAATACTTCTTTATCCTTCATAAGATATACTGAGCGTATATAGGAGACAAAACACTGTAAGATAAAAAGCACAATGTAATAGAAGTTACAACTATAATATTAGAAAAGACT s bosTau2.scaffold2637 51766 357 + 106644 GAATTTATATTCACAAACAAGAAATTTCTTTCTGACTGAACTGAACAGTCAACAAGTTTCCTACAGCTTATACAGTCT--TTCTCTGCAAATCTTCAACAGATTCTTTCAAGGTAACATAAAGAGGTTTAAACTAGGATTCTCAGAAGCAGGTTTCAAACGAATTCCCTCTAACTCTGAGGACTCACAATCAAAATTATAATAGGAATACTTACAGGGCATAATCAGATATAGGTAACTTGCTCACATCAAAAATTTCTTTATCCTTCATCAGATACACTGAACGTATATAGGAGATGAAACACTGTAAACAAAAAAGGGTGAGGTATATGACATAACAGTCAGAA-ATGGAAAATGAAT a score=209 s mm7.chr9_random 5117693 718 + 9745104 cttagaaattcaaggccagaatgggctat-------------atGAAGTCTTAACTGCAAGGAGAAAATTCATATTTTTACTTGGCTTCTCAAAA---TCTACTGAATATTAATTAGTAGTAATTATAATAAGGTGCAATGAGG----ACAACACGGGCAATGGAATAATACAGATAGAGTATCTATACTGA-CTGTGTATGTTATTAGCTGAGCAAACACCATTTTCTAAATG-CAATTTTCTCATC------AAAACCATAACAGTGTCTCCTAATTC-ACTGTTATG-----CCAATGAGAACACT-TATACAGAACACGC-AGAATATCTGCTGAAATAGAGTAGACACAAATAAATGCTTTTTGTTGGTTA----TATTACTGTA----------GTAGTCAAAAGTTAAGTTTTCAACAAAATAAAATTTCACTATAATAAA--TGATCCAAGTTATGACAG-----ATT---------GTTTTCCCTTTAATTTCAAATAATTATATACATATATGTCATATAAATATTACTATCATCCTGAAAATTCTTACTTCCTTTTTTCTTACCTAGAACTATGCTTATGACAGAGCTATGTCATCTTGTTCCTATCTGTTTATAAAATAAATAGATAACAAATACATCTAAGCAATTACTTTTACTTTAAAGATAATTTTTATggggccggggagatggttcagtcagtaacgtgctggccacacaagcatgagaacttgagtctgaaagccctgcatccacattaaaaggccatgtaaaca s bosTau2.scaffold2637 52238 605 + 106644 TTTAGAATTGTAATCTGAGAAAAGACTATAAAATTTGGTTTCATCAAGCC--AACTGAACATAAAATATAAA-------------CTTCTCAAAAAGCTATTCTGTAAGTTAA--------AATCAT--TCAGGTACATtaatgggaaaaaatataggttttggaata--acagttgaaat-------ctgagttccacatcttacaagctgagcaagt-ttattatttctctgtcagtttcctcatctatcaagataatataaaagtaccttctactttgagtgtaatgagaactaaatgagaaaaatgcatgtagactacttgagcatttcttctgaaatatattaaatatcagtgaatatcagttattCATAATAATTATTACTGGAAAACATCCTTGTAAT--AAAACTAG---TACAACAAAATAAAATTTTACTGTACCTAAGCTTAATAAAATCATAACAGGAAAAGTTTAGGAATAAACttttttataaactttaataaattatttaCTGAAATTTCAAGTAA--------TTCATCATTATAATT-TCAAGTAGTTTGTCATTAACTTGCAATA-------------------------TTTTCTTCTGTGTTTTAAAAAAAAGTA--------------------AACTATCTTTATGCCAAGAACCATTG--------------------------------------------------------------------------------CAAACTAAAAG-----GTAAACA a score=13128 s mm7.chr9_random 5118524 625 + 9745104 cagatacaataaaagaccttgtttcaaacaacaaggtagagaatgtttgaagaagacatccataattgacctctggcctccatatacatgtatgcacacCTATACATACACATGCATACACAAAAATATATACAGTTCACACATAATTTTTATAAAGTGTTTTCTAATCCTTCTGTCCATATCTCTTAAACTTTACATTTTCTTCTGCATCTCTACAGTTACTTAATGTAATGTAGAAAAGAAATTAATCTTTTCTCC---CCA-----ACAAATCTCCCAACAAACCATTTT--CTGTCTCCAGAAGCATTAAAAAAAATGGAGTTGGTTCA---ATAGTATTCTTCCTGTAAGCATCCACAGGAAATAGCACCA-----TTATAGGTTTTGTTCCACCCAGATTATAATCAAAAGCTAGAAAGTCACTTTTCTGAAACCAAATAGCCTGAT---GGTGCCAGGAATACAGCCATTCTGCTAACCCATGTGTGACAG-CAACAAGTTTCACTGCTCACTTCAGTGTGCTATTCTATACTGTTGTTCTAG-AGGATCACTTTCCATATGCACAAACCA-TGAAA---TGTCCTTTCAGCATTCTGTATTTCCTGGTCTGCAAACAACTG-GCCTGCTAGTCA-----TCACAACACTA s bosTau2.scaffold2637 52878 530 + 106644 CAAAGATGGTGAAAAACA----AACAAACAGCAAAGCAGAAGtttt-------------------------------------------------------------------------------atttttttattttaaaattaaGCTTTGTAAACTATATT-TAATTCCCATTTCTATATTTCCTAAACTTCACATTTTTTC---TAACTTTAC---------------------------ACTAATCCTTTCTTCAAACCATTTACACTAGTCTC----CAAACCATTTTCCCTATCTCCATAGGCATTAAAATGAA---------TTCAAGGATAATTTTCCACCTACAATCACCCACAAGAAATCACCCCAGTTGCTTATCGTTTTTGTTCTATCCAGATTATAATCAAAAGCTAGAAAATCACTTCTATGAAATCAGATAGCTTGCTGCAGCTGCCAACAGT-TAGCCATTCTGCTAAACCATGCATGACATCCAATAAATCACATCATTTATTTCAATGTGCTTTTCTATGATCTTGTTCTAGAAGGCTCATTTGCTGTATGCAGAAACCACTGAAACAGCATCCTTCCAGTTTTTCATATTTCCTGATTCGTAACTGAATGAGCCAGGTATGCAGTAAGTCACAACATCA a score=5482 s mm7.chr9_random 5119301 187 + 9745104 AAGACTTTTAA-TTCAGAAAAGAATTCCAAGAATATTA------------AGATTCAAATTTTATTTCTGAAGATAATTTA-CAAGAATGCTATACCATCTAGAAATTTAGCCTAACACAGAGAATATGAATCTTCTAGTC-AGTAAATGCAAT--TGAACTTACAACAATTTCATTGAA-AAAGGAAGTTA--AGTTTTATTAAGT s bosTau2.scaffold2637 55041 198 + 106644 AGGACTTATAAGTCCAAAAAAGCAGTTTGGGAACATTACGTCATATTTATAGATTAAAACCTCATTTCTAAAGACAATTTAGCAAGAATGCTATGCTTTCTGGAAATTTAACCTAAC---------ATTAATTTTACAGTCAAGAGAGTACAGTGAGAAGTTAATAACAACTTTACTGAAGAAACCAAATTGATATCTTTATCAAGT a score=17879 s mm7.chr9_random 5119585 879 + 9745104 AGTAGCAGAAATTGATGAAATATAACTTCCTTATATAATTCCATTCCAAAAACAAATACTGAATTTAAAAGTGACTTACCCTTTGAGCTCTTTCTTTTAAATCTTGATCTTGAGCTAAAAATGATTCTAATTTTTTCTGAACATCAATAAGTTTTTCTGGATTGATTCtttttaataa-aaaaaaataatGGTTAACTAAAAAGGCAATCTCATTTTTCAAAACAGAAAATAATACATAACATTTTCTTATGCCCCCTCATTTGCTTTTAAGTGTTTAACATA-TTTCTCATCTATGGACCA---------AGAATAACCATAG-----------------------------------GAAGAAGAAAATGACAGAACAGTAGA---TTTCTTTAACCAA---ATGATGAGGAAGAGAAGGCTATCTATATTATCCATCTATATTAACATAATTATTGGCACAGGCTACTTCTTAATTTAACAAAGCTAGAAAGTAGACACCCATAGGACATAAATTAATA------------AGATGAAATTCAATATCATTTTTGCAAATGACATTGCTTCTTTTTAAATCATATAT----AAAATCTATTTCAAGTAAGAGAT---------------TAAAAACTGTTTACCTAGTT--AAAATTA-----AATATATCAGAAACATTA---AATTTTGCTTAA--CTAGGCTATA---TATAGCAAAGAA-----------------------TCTACATCTCACAA--GAGACTCCATTTTTTTCCTAACTTCAAACTGAATTATTATATTACTCCAACTCTAGAGTTGTAACAAG-----GAAACAAAAAGTATAAACAGAGCAGTTTTTCCTTTATTATTAGAGAAAATTTTCAAA---ACATACAAAGATAC-------TAGCTTCAACAATTC---AATTTATGGTCAATTTTTATCT-TCTATATTTTTAATCAGTCCTGCTAGTATCTTAGTCCAAATTACTTTTAGACAAATTAAGC s bosTau2.scaffold2637 55544 967 + 106644 AGTAGCAGAAAATGATACAATTGAACTTTATTACATG-CTCTAGTCCAAGGA-AGGTATCCAATTCAAAAATAACTTACCCTTTGAGCTCTTTCTTTTAAATCTTGATCTTGAGCTAAAAATGATTCCAATTTTTTCTGAACATCTATAAGTTTTTCTGGATTGATTCTTTT--ATAACAAAAAGATAAAAGTTAAACTAAGA---CATCTTGATTTTAGAAGCTGAAAATAGTATACATTATTTTCTATT--TTCCTCAGTATTTTTAAAATCCGTAACATCTTTTCTCATCTATGACCCAGATTAGATCGAAATTACACTAGACCTAAAGTTGACTCTGTATATTTCAAATAATGCAGAAAAAGTAAATAAAATAAAATCAGACATTTTCTCTAAACAACCTATGCTGAGTGAAAGA--------------------TTAGGTTAACACCACAATTAGCAATG--TTCCTCTTAAATCTTTAAAGATAGAAAGTAGTCCGTCCTGGGAGGTGGATCATCAATGAAACGGAACAAATAAAAGAAAATGTTCATTTTTTATAAGA-----TTTCCATTTCAGTCAAATATCAAAAAAATCAAATTCAAATAATAAACAAGTAGTCAAGGATATAAACATTGTTTTCCTTATCTGGAAATTAGGCATAATATAACAGAATTGTTACTTAAATTTATCCAGATTTAGAATGAAAATTATGGGAAAAAAATGAAATTCTTACAAGCATCTATTCTATATTTCACAAAGGAAATCCCACttgttttcta-----------aacaattttgttttctcaacaattttgttCCGAAAAGTTGCAGTGGTGATAGGTGGTAGCAGATGAGGTTTTTCTTTA--ATTACAGAAAATATCAAAATACATATACATAAAAACCTTAACTCAGTCTCAACAATTACAGAGCTCACACCCAACTTTGTTTTACCTAAACCCTTACCCACTCCTCC-----ACCAAATCTAACCTACTTTCCTACAAATAAAGC a score=14649 s mm7.chr9_random 5123091 423 + 9745104 AAATCAGAAGCTAGATGGCCAAATAGCTTAGGAGGAAGAAGGAAGGAAGTGCAGGCAAT-AAGCACAATGATGTCATGCTATCACTC--CTAACAGCCACA----GATATCTGAACAAGTGGCTCTTACTTGATCTCCTTCACAGGTACTTTCTTCTGGAGAAGCTGCTGCACCATTCCTTGCTCTTCTGAAGGTAGTAAAATTAATAACGCTTCTCCATCTTCTTTGTACCTAAAAACAAAG--------TTTTTAAAACGTATCAATACAATCTTTGCTTCACA-TTTAACAGTAAAATGAGTAGATGACATGAAATCAAGTTCACTTAATTAGTAAATGCTAGAAAAGTC-TACTTTTAATATTCTGTGAC----GTAAAGTAGGTGTTCTGGCTGC-CTTGTTTCAAATTCCAATCACCTGCTTTAATTCCCACTGCCTTT s bosTau2.scaffold2637 57212 436 + 106644 AAGTCCAAAATCCGAAAGCAGAAAAGATTACAGGGAGGAGGGAATTAGGTGGACATAATTAGGCACAGTAATTTCATGACTTCATTTTTCTAACAATAACATCAAGACA-----GCAAGTCATTCTTACTTGATTTCCTTCACAGGCACTTTCTTCTGAAGAAGCTGCTGTACCATCCCTTTTTCTTCTGAGGGAAGCAAAATTAATAAAGCTTCACCATCCTCTTTGTACCTAAACAAAAAAAGAAAATCTCTTT----CACATTAATGCAATCTGCATTTTACATTTTAACAGCTTGATGAATAGGTAACAAGAAAGCAAGTTCACCAAATTAGTAAGTATTAGGAATACCATGTTCTTTAACATCTGTGACAACAGAAAACTAGGGCCTCTTGGAACACCTTTTTCAAATATTCATCACTACTTACACCTCCTAGTGATTTT a score=19413 s mm7.chr9_random 5869704 436 + 9745104 GGCCCTG---GAGCCTGCTGGAAACAGGACTTTTAAAA--GCAAGTCTGTCTGGCAGGCT-------------ATTTTTGCTGGCTACAAGCAAGGTCCC---------AGAGAGTACAAGGCTCTT---AAAATTGAAGGTGTTTATGCCCAAGATGATACTT--TTCTACGTAGAAAAGAGATGTGCTTATGTGTATAAAGCAAAAAAACAATACAGTGACTCCTGAAGGCAAACCAAACAAAACCAGAGAGATCTGGGGATAAATAACTCAGGCCCACGGAAACAGTGGTGTGGTTTGTGCCAAATTCCAAAGCAACCTTCCTGGAGAGGCCGCTGGCCACAGAGTCCGTGTGATGCTGTG-CCTTCCTGGATTTAAATGAATGGAAAGtaaataaataaattttaaaaaGTGAATTTGTGCTCTTGTATTTTTTTTAACTAGAAaaggaaggaaggaaggaagaa s bosTau2.chr13 43930941 443 + 62721844 GACCCTGTGAAGGCCTGCGGGGAACGGGACTTCTAAAATGACAAATATGTCTGGAAGGCTGTGGTCCAAGACCATTTTTGCTGGCTATAAACGGGGTCTACAGAACCAAAGGGAACACACTGCTCTCCTGAAAATTGAAGGTGTATATGCTCGAGATGAAACTGAATTCTATTTAGGCAAGAGATGTGCTTATGAGTACAAAGCAAAGAA-CAACACAGAAACTCCTGGTGGAAAACCTAACAAAACCAGAGTAATCTGGGGAAAGATAACTCGAGCTCATGGAAACAGTGGCATGGTTTGTGCCAAATTCCGAAGCAACCTTCCTGCTAAGGCCATTGGACACAGAATTCGTGTGATGCTGTACCCTTCGAGAATTTAAACTTCTTGAAAATAAATA----------ACAGTGTGGATTTGTTCTGT---------------TAAAAAaaaaaagaatgaaataataa a score=15819 s mm7.chr9_random 5923067 353 + 9745104 AAACAGCTGCTGTTGTTTGTGCTTTAGAAATTCACCGAGCTCATCGGCCATACCCAGGGCCAGATGACCGTGCTGAGGCTCACAGAGCTGCTGGAACGAGGAGAGAGGCTGCCTCGGCCTGACAGGTGTCCCTGTGAGGTGAG-TCCACCAGCAGATGTTCCCTGTCCCCACC-----------------------CTTACGACACAGGGCAGATGGCCCCACAG-----------------------------CCCCATTTC---------------------------------------------------------TCCCGCAGATCTATCACCTCATGAAGAACTGCTGGGAGACAGAGGCCTCCTTCCGGCCCACCTTCCAGAATCTTGTGCCCATCCTCCAGACAGCACAGGAGAAGTACCAAGGTCAGGTGCCTTCCGTGTTCAGCGTGTGCTGA s bosTau2.chr7 9468386 457 + 69141744 AAACAGCTGCTCTTGTTTCTTCTGTAGAAATTCATCGAGCTCATAGGCCTCACCCAAGGGCAGATGACTGTGCTGAGGCTCACAGAGCTGCTGGAACGAGGGGAGAGGCTGCCACAACCAGAGAAATGCCCCTCTGAGGTGAGATCCTCC------CTTTCCTTTTCCCCACCATGGGACCAGGGAGACAGTGGAGTTCACAACCTGGTGAAGCCAGCCTCCCTGACTCCCTGTGCCTTACCGCTACCCTGAGACCCCACCCCAGGGAACTGACTTTCCTAGACTTACTCCGTTTGGACTGCTATAACAAACTTTTTCCTTTCCCCAGATCTATTGCCTCATGAAGGACTGCTGGAAGGCAGAGGCCTCATTCCGCCCGACCTTCCAGAACCTCGTACCCATCCTCAGATCATACCACGAGAAATACCAAGGCCAGGCCCCCTCGGTGTTCAGTGTCTGCTGA a score=11940 s mm7.chr9_random 5978084 456 + 9745104 acaaaaaaaaaaaacTCAGCAACACTCAGGTTGCCAAGGTGTTTGGAGGGGC-CGGGAGGGGGATTTTTGTGGTTTCTGAAATAGGAAGTACCACCCTAAAGTGTATCATTTCTGAAGTGGAGAAAGTTCCGGTAGGCTTTCAGAAAAGCCAGCCCAATGACAAGCTGATGTTTTCAACATATTTATAGGTCAAAATAGTAAAAACATGACTTATCTCAAAGACCAATGGTGTTATTTGCATGTGAAGTGACTAAA-GTACACTCCATAGTTGCCCACTCTGAGAATTTATT-AGCCACAG---AAATCTAGCTCGCTTTTGTGAAAGACACAGTGGGCTGCCTATCGTGATTGTTTTTCTT-----TACTGCAGACCTTC--------AACAAAGCTCGCTTGGGTTTG-AAGATGAATGCCAATGGAGACATACGTGTTGATTATCGACTCTGTGGCAAAGCATCGTGGTTTGA s bosTau2.scaffold8436 24385 463 - 33063 ACGAAAGAAAACTACTACGTAATCCC------ACTGAAGTGTTGGAAGGGGAACGGGTGGGGAGTTTATGTGGTTTTTAAAA-GGGAAGTTCTATCCCAAAGTGTGTCATTTCTGAAGTGAAGGAGGTTCCAATAGGCTATTAGAAAAGCCTGCACGATCACAATTTGATGTTTTCAGTACGCTTGTATTTCATGATAAGAAACACATGATTTTCCACCGAATCACACAGTGTTATTTGAATACCAAGGGACTAAATTTACACACGAGGGCTGGCTATTCTGGTATTTGATGAAACCAAAGGGAAACTTCTATTGAGTCTGGAGAAAGACAAGACTAAATGCCCATTAGGACTTTTTTTTCCATTCACATTGCAGGTTTTCACATTTTTAAAGAAGCTCTCTTGAAATTGTGAGGGGAGTGGCAGCAAAGAGA----TGTTTGTCATCAGTGTTAGAGGAAAGGA--GTGCTTTGA a score=25195 s mm7.chr9_random 6237497 1887 + 9745104 CATTTTGTATCTACTCTTTCTGGCCTCCC--AGCTGCCCACAGAAGAAGACATTACTGACTTACTTCAAAGGTGGTTTGAGGCCATGATGAGATCGTTGAGAAAACAAACAGGTACATGGACTCTGAGGCTGAGCTGTGG-TTAGGCCAGGGACCCACATCTTCC----------------------CAAAAGGCTACTCTGG---CAGGTTCAAAGCTGGTTGGAGTGGATAC--AGGCACAGAGCCTCCTTGTGTTGCTGGAGCAATACAAGTA---TCCCAGTGGAAGAACTTTTTATACTAAAGATGTCTATCCTGCTGGTCCCAAGAGC-CTGTCCCTGATTGGAATCCTGTGACAGCCTTGGTGGCCCACTATG----------CATTC---------------AGGCAGGCAGAAGAGGCTTTAGAAGTCTGTTCTTCAGCGGGTGT---AAGGAAGCCTGAGGCAAGGTATTAGGAGCGCAAAGAGCAGGGAGGAGCAAGCTGCCTCAGTTGG-----AGCACAGGACCCCATTCAATGTAT---CCTCTGAATG-GGCTACCCACTCAGGA--CCCTGAACTAGAGAGACAGCGCTCTGG------AGGTGATCTGTAAGGTGCCACCAACGCAGACAGGCTTTTAAAGTGGTTAACATAACCTGAAAAACAGGGAGCCACATATTTGGCTAATTGAATAGTGATAAAACTCACTAGAGATATTTTTCT----GTAATTCAGATGGGG-----AATCGGAACCAATACAGAGAATATAACCAACCA---ACCCGAGAGCAAAAGGACGGGACTGGAACAGAGGAcccgccccccccgcccccccccccccccAGTGCTGCTTTCTTGGCGGTCCAGAGGACACACCGATGTCTCATACAATGCCATCCAACATCCC-TGCATCTCTTCTAAGTACTGCTGTCCCAAAGCCCAGTCCTTCCA-CAAGTGTCCATAACTTAATCTCTCTGCTTTCCAGG-------AAACTCAACACCCGCCCTGACTTCCTGAGCTTGCTCCGCCCTCTCCTTGAGCACACCAGGAGAACACTCTCTTTCAGGCCTGC---TCAAGTCCTCCCTGCCATCTTTTAGTTCCCTCGAATACTCTGGCTTGGCCTTCTCAGCTTCCGCTCTGCCCCATTTCA----------CTACATGATA--------------ACGTCTAGGAGGACAAGAACC-ACAAACAAGGGACCCTCCTTTTGCTCATAGTGAGGAGAGGCCATGGCAAATGCTTGCGT------TTCTTTGTTGCAATGTCTGTTTACACAGGCACTGCAGAGCCCTGGTCCTAGAAAGATCACAGACCCCATTGTCCATGAG-GCTGG-GCAAGTGGTATCCAAAAGACTCTGCAGTTGATCTTAGACAAAAGGTTAAGGCCCAGCTAGGTACTTGTGCCCTATCACTCAGCCAC---TCTCCCTGCTCTCTGAACCCCTCCATCCCCCAGACCACACTG---------GCCACAGC-TGCCCAGAGAAGC----------------CAGGAGGCTCTCCCATT---------------AAATGCAG-------------GTTGGCTACATT----------------TAACTTAGAG-AGACAAGCCAGGGAGTTAATG-TGGGTCAGGCAGGTCTGGCCTTAAGTGGTACCCAAAG----------------------TTTTACCTAACTGCAGGCATCTAACC---------------CCAAGGCAGTACAGTTCTACTACTATACAGG--GGTCAG----GAAGAGGGTT-----GAAGGTCTGCTCAGTCCACATCTCCTGCTTTAAGA-GAGGGATGTTGAAGCCCAGAGATAATCAGAATCCTTCATGGTATCTCATAGCCTCTGACAGGAGCTCCGGGAAGCCAGGTCTCCT-----CAGGTCTAGTGTCTTCTCTGTAAA-------CTCAGGAAAGGAGGAGGGCAGATGGTCTGTGTTG-TGGAAATGAATGAAATTGAAAATTGAATTGAATGAATTGAAAATGCAAATTCTGGGTCCTCTATGGTTATTTGCATTTTAAATGAAACACAAACATCAAAAC-ATCTTTTTGACTC-AGGCAAAGCCACAGAGACA s bosTau2.chr21 29159875 2004 - 49724630 CACTTGGCATCCATTCTGTCTGGCCTCCCCCAGCAGCCACCATGTGA-------------------CAGATG-GGTCAGAGGCCACAGGGGAAG----AAGGAGATAAA--GGTACCTAGAATCTGGGGCTGGGCTGGGAACCAGGCGAAGAGTCCTCATCTCCCTCCGTCCTAGGGTTTGGCTCTCCAAGAGGCTGTCTCGGGACAAGGGCCAGAGCCTGA-GGAATGGACAAGGAGTCATAGACCCTCCGTGGGTTGCTGTATTATTTCCAGAGCCTTCCCTATGGAGGGACTTTTTGTACCAAGTGTTTCTAGCTCACTGGGCCCGGTAGCACTTTCTGTGGCTGGAATCGTGTGACTGTCAAAGTGGGCTAGGATGGTGATGCCCGCTTTCTACAGAGTTCTAGGGAGGCTGGAAGAAGAGGC---AGGAGCCCAGCC---AGTGGGCATCCCAGGGGAGAATGAGG------GCTGGGAGGGGTGAGAGAAGAG------------CCTCTGTTGGTGACTGGGTCAGGGCCTGATTTCAAATATTGTCCTCTGAATAAGGCCGCCCATCCAGGAGACCCTGGGGCTGGGGCACAGAGCTGCAGTCTGATAGGTGGTTTCTGCAGCACTCCCTGTGCCCAAGGGCTTACCAGGTGGTGAAGGCAGCCCACGAAGCAGGGAACCCAACATTTAGCTAATGGAACACTGACGAAGCCTGCTAAACATGGCTGGCCCTGAGTAATTCAAAGGCAGCTAGCAAATGCATTATTTAAAAAGAAAAAGACAAGACATGAATCTCACTGCCAAAGCACTGAAGTGTAACA------------------------TCCAGCGTCAGTGGTGGTTTCATAGGGACACAGAGGAGGTGTTTATGTAACACATCACGTGACAAAACATCCCCTAAATCTCTTCTAAACACTTCTCACTGTGAGCCCAGTCCTTCTAGTCACTGCCCAAACCTCTCTTCCTCTGGTCCCCTGCTCCTGCCAAACCAAAGCTATACCCTATCTTCCT----TTACCCTTCCCTCCCCTT-------CCTGGAGGGC-CTCCCT-----GCCTCCACTCCAGGGGCTTCCT--CATCTTT------CCTCAAAGAATCAGTCTGGCCTCTTTTAGCTTGTCCTACGCTGTATCTCAGACTTTCTCCCTTCATGACACAAGAGACACAATTACATCTAGGAGGCTGAAAGCCCACAGACAAGGAGTCCTTCCTTTAGAGAAGGGTGGGAGAGGTGACAACAGGTCCTTGGTTATAGTCTCCCCCACCGACACACCGGTTTACACAGATGGCACCGAGCCCTGGTCCTGGAAAGACCCTGGGACCAGCT-CCCATGAGCACTGGTGCAAGCAGGGCCCAGG-GAGTCT-----------------------------CTAATGAGGCccccgcatcctgccccgcagccacgtcccaccctgacctcaggccctccccatccccctg-ccaccctgctccatcctgcctcagcctgccccAGGAGGCTCTTGCCTGAGGCCCCCGGGAGGCTCACCCCTTCTGACGGGGCCAGAGGAGTCCAGCCTACAGTGTGTGGCTGGCATCTTTGGACCATCCAGGAAGCTGACTTGGAGTGGGCTGGCTTGGGGTCGAATGGTGGGCCGGGTGGGCCTGGTCT---GGAGCCCCCAGAAATGCCTCCTGTCCGCTCTTGGCTTCCTCCTAGCACCCAGCACCTGAATTCCCTTCTCATACAGCCCGAGTAGCAGACTTCCACCACTGCGTtggaagatcagagctgcagagggcccgggaaaacgttagccgagtctaaacctggtgactcaagctgggggatgctgaggccccaagagagtcaaggaccctctcaaggtcacaaagctt-tgacagaaggagctagaaccaaggtcttctgcttccaggtc-agtgttttccccacAACACAATTTCTAAACTATGGAGGAGGGTGGAGGGCGACTGTTGGTTGAAATGAATGAAATTAAAAAT---------------------GCAGACTGTGGTCCTCTGGGGGTGATTTGCATTTTAAGTGGAATGCAAAGATCAAAACAATCTTCTTGACTCAaagcaaatctatggagaca a score=2358 s mm7.chr9_random 6241352 69 + 9745104 TTGGGTAACCAACTCCCCTCCAGAGGCTGTGGTTAGCTTTGCCAAGGCCTAGCTTCTGGGAACTTGACC s bosTau2.chr21 29163341 65 - 49724630 TTGGGT---CCACTTCACTCC-GAGGCTGCTATCGGCCTTGTGAAGGTCTAGATTCAGAGGAATGGACC a score=3993 s mm7.chr9_random 6242100 200 + 9745104 AGGGACAGAGCAGTCATGCCTCTGGCTAGAGGGTAAAAAACATGGGGTTC------------TGGAAGGATTCTAGGCATCACCTTTCTGCCTTCCTGTCTGTTCCATTCCAGCTGAAGCCAGCACTTAGGGCCTCTGTCAAATAAGCATTCACAGT---TTCTTCCTCACTCGGGAAGCCATGGCTCAAGAACACC-ATCTTTTTCTTAAATGTA s bosTau2.chr21 29165146 201 - 49724630 AGAGACAGAGAGGTTACCCCCAGGGCTGGA-------AATCATGAGGACCCCAGGGAGGTGATGGAGGGGTTCTGGCGGGCCCAGCTCTGCCCTTCTGGCTGTGTTACTCC--CTGACGTC-----TCTGAGCCTCTGTTGAGCGAG-GTGTGGAGTGGACTCTTCCTGGCTCAGCCAGCCATGGCTCAAGGACACTGGtcttaaccctggatgca a score=9553 s mm7.chr9_random 6455477 159 + 9745104 TTGATTGATTCTCATCTCTGGGGTGGTTGGTTCTCCAGGCTGTTCATCAGCAGATTCTGAGCAACAAGTTCCTCATTGTACGAACGAGGGAACTGCAGTGGAAGCTGGAGGACTGCCGGAGGTTTTACCGAGAGCATGAAGGT-GAGGCTGGTGGTCTTC s bosTau2.chr22 8894080 159 - 48330986 TTCACTGACTTTTATCTTTGGGGTGGC-ATTTATCCAGGCTGTTCATCAGCAGATTCTGAGCAACAAGTTCCTTATTGTGCGAATGAGAGAACTTCTGTGGAGAAAGGAAGACTGCCAGAAATTTTACCGAGAGCATGAAGGTAGGAGCCAACAGTCCTC a score=2672 s mm7.chr9_random 7043478 259 + 9745104 ATTGAAAAA----CTCCTTTACTTTCTAACCCTCCCTTTGGGATTTTCCCATGGTCTCTATGAATGGAA------CAGTTTTCCATGTGCCG--CCAG------------------GAAGCCTTAAGCCACTGGTCCTGAAGGCA----TCCTGG--------TGCCTTG-----------------TTTACAGCACAGGCTGCTCACCCATTAGCCCTGACCCAGGATGGGTACAGAGCTTCTGCTGGA----TTCTAAGCAACACTGGCTCTCTGAAAGTTTAACATTGCTGTG-TGGCCTCCTACCCCCTAACTTCCTCC s bosTau2.chr15 9347000 300 + 53815408 ATTAAAAAAAATGCTCCCTCCTTTGCTAGTTCGCTCTTTCGTATTTATCCAGGTTGTCCGTGAATGAAAGCGATTCATGCTCTCATGTGCTGTACCAGCTTCCCTGGGTACCTCCTAGGGCCTTAACCTGCTGGGCCTGAAAGCCGGGTTCCAGGACGGCGTCTGCCCTGAGGGCCATTGGATGCTCCCCACAGCAGGGGTTGCT---------GCCCTGGGCAGGGACAGG-ACACGCCTGTGACTAGACTGCTTCTGGGC-------TTTCTCTGAGAAGCTGAAGTGGGTGTGCTGGTCCCTCGC------ACCTCCTCC a score=3898 s mm7.chr9_random 7043762 233 + 9745104 GGCTACTCCTCTTTCCTTCGTGGGAAG---CCTTTCTACTATTAAAAGGCGAGCTCTCA----------------CATTACCCCTTCAGCAGCCTAGAGGAC-CCCTCCTTTGCACTCCCGGGTCACTGGCCTTTTTCCACACATGCATGTGTTGCGTTTAACACATGTGTCTCCTGCAGCTTTCTAGAAAATCACAGACTTCTCTGGCTTGCTTCC----------AGATGAGATCAGAACCTATAATTTATTCCCCAACAG s bosTau2.chr15 9347357 248 + 53815408 GGCCATTCCTCCTTTTCTGCCTGAAAGACACCTGCCTCCCCTTCAAAGCCAAGTTCTCAGGTCCTCTCTGGGCAGCCTTCACCCTCTGGCCTCCTCGTGGCTTCCCTCCTCTGTGCTCCCACACCCCAGGT-TTCTTCCATGAACAGTTGTGT-------AACCCAAGTTTCTACCACAACAGCTCAG-------CAGCCTTCTCTGACGCATTTCCCATCTGCCCCAAGTAAGATCAGAGCCTTGAACTTATTCCCAGCCAG a score=5741 s mm7.chr9_random 7043995 229 + 9745104 CTGTGTGTT---ATGGGTAAGGTGGGAAACTCCCAGAACTGACTTCTAGAGCCCACCATCTTTCACCTGGTTGTTCCAGTTCATTATGGAAATTGCTTCTCTTGC--CACTA-ATACCACTTCCA--CTTTCTCTGTGCAGCCACGAGAGCCTTCTGTCCTTCCACACTTCTTCCCTAGCCCAGAAAGTTG-CTTCCACATTAG---AGGCCACCAAGAGGCAGGGTATG-----GAGGGCTGCAC s bosTau2.chr15 9347827 233 + 53815408 CTGTGTGTTTGTGTGTGTGAGGGTGTGGGTCGCCAGCACTGACTTCTGGTGTCTTCCGTCTTCCCCC----TGCTCCAGCTCACGATG------GCTCCTCTTGCTGCACTACCCACCACGGCCACCCCTCCTCTGTGAAGCTGCCAAAGCCAGGTGTCTATCCACACATCT---CTGGTCCAGCCTGTTGCCTCCCACTTCAGGCCAGGCCATGTGGAGGCAGGTCAGGATTCTGAGGACGGCAC a score=10057 s mm7.chr9_random 7044242 349 + 9745104 ATAATGGAAGGGCAGATGGGCTGTAAAGTATGGCAGCTGCAGAGACCACAGAGCAAGGAGGGTTACAGCAGAGTAACAAACACTAATGCATTCACTTAAAAAGCCTGGGCCAGAGCAGCCACAGCTACATGTGTCTGAATACTGCTCATCCCACCATCAGGGACACTGCTGCTCCTGGGCTCCAGCAGCCATTCTGAGCCATGAAAATACAGATTCTACCCAGCTGTTCTGCCCACAGAGTCAGAGTTGCATGTCTcccaggcagcaccat-----------ggtaagaattgggggaaactgtcctttattctgtcacatgcatcccctcactaagataaccttggcaagtgcaacCCA s bosTau2.chr15 9348444 353 + 53815408 ATAGTGGAGAAAAGGGTGGACTACAGACCAGACCAGCTCCAGA---TGTAGAGTGAAGATGCCTACAACAGGGCATCATGAATCAGTGAGTTCACTTGAAAAGCCTGGATCAGAAT-GATGGACCTAGATGTACCTGAAGGCGGCTGAATCCATGGCCCAGGGCACTGCCGTTTCTGGGCTCCAGAGGCCACCCTGAGTGAGGAAAATAT-GATAACTCCCTTTTGTGCTACTGCATGAGTCAGGGCTGGAGTTAGCCCATGTgttatcattagcccatctcagtaggaactgggaaaag--gcactccttcctgacacatgtagcccctcaccaaggtgcctttggcaagtggagctca a score=5589 s mm7.chr9_random 7048213 325 + 9745104 atacaTCTGTGCATAGAAAAAATCATTAGTTTCAAAGTTAGAGGACAGTC---TGT-TACTTGGGTGAAAAATCAGCTCAGTAGATTGCTACCAATATGGTCTAATGTTTAAAT------CTTGGGTACCTTTGTGTTGTATTTAACT-ATTAAATA--ATTGGGTACTAACTTT----TTTTTCTCTTTATTGTAAAGAATAAATGTAGATATTG-CTTGTGCAATTTTGTTATACTTGTGCAAC--CACAGTGAGTTATCTGAGAAAAAGAATACCTTTTCTGCTTGATGGTGGTATTTAAAAGTTTGAAAAAAATGCA--AATATTAACTATCTTTGTACAGAT s bosTau2.chr15 9351884 333 + 53815408 ATATATTTATACATACAGTAAATAC---------AAATTGGGTGGCAATCATTTGTATAATAGGTCACAAAATCAATCTAGTGGGTTGTAACCAGTGTTCTTTAATGCTTGCATTTTTCATTTGGGGATTTTTATGTTTTATTTAAATGATGAAATCATATTTGGCATTAACTTTATCATGTATTTCTTTATCATATATGGTAAAGGTAAAAATTGTTTTGTATAACTTTGTTACAGTCACATAACTGTATAGTGGGTTG--TGATGCTAAATATACATCTTATTTTAGGTTATAGAG---AAAAAAATGTTCAAAATGCATTAGCATCCATTTTCTCTGGAAAGAT a score=35123 s mm7.chr9_random 7626906 547 + 9745104 TCAGTTTCCTTTAGACTACACCTTCAAGCCACTTAAGGTTGCGTTTACAACAAAAATTTATCATCTAAATATCAACAGTAATGGCAGCATTTATCTTGATAATCTCAGATCACAGT-GTCTCCTGCTTTAACTATTTCTAATGTTCATTTATCCATTTGTTCACTGCTATGTGATCCAAACCCTGATGACCTCCTAGTGCTAGAGACTGCACAGATC--TAAAACAGATAGTGATAAATACAACAGAATATCTTGGGAATGGACTCAGAAGTATGCCATGTGATGTTACCTTAAAGTCAGAATAACTTGCATTTTATAGCTGGAATAAACTTCAAATCCCTATTCCTTTTTTT----------------------------GACCTCATGTTTTTCTTTTTTTTTCTTTTTGTTTATTTCCCTCCTTTCATTCACATGTTTATCTAAG-AGACTTAAATTCTTTCAGCTTTAGACAATAACTACTTTTAGAATCTGCAAAGTAGTTACAAGAAAACAGTTGCCCAAGATTCAGAATCTTTTTTAAAAACTGGAGCTTGTCCAGATACATATGTAGCCAA s bosTau2.chr5 30395712 568 + 76426644 TCATTTTCCTTCAGACTACCCCTTCAAACCACCTAAGGTTGCATTTACAATAAGAATTTATCATCCAAATATTAATAGTAATGACAGCATTTGTCTTGATATTCTAAGATCACAGTGGTCTCCTGCTTTAACTATTTCTAAAGTTCTTTTATCCATTTGTTCACTGCTATGGGATCCAAACCCATATGACTCCCTAGTGCCAGAGATTGCCCGGATCTATAAAACAGACGGAGATAAGTACAACAGAATATCTCAGGAATGGACTCAGAAGTATGCTGTGTGATGCTACCTTAAAGTCAGAATAACCTGCA--TTATAACTGGAGTAAACTTTAAATTACTATTCCTTTTTTGATTTTCTTATCTGGCTGCTCCCCTATCAGACCTCATCtttt--ttaattttattttttatttaCCTCCCTTCATTCATTCACATGGTCATCTGAGAAGACTTAAGTTCTTCCAGCTTTGAACAATAACTGCTTTTAGAAACTGTAAAGTAGTTATAAGAAAACAGTTGCCCAAGATTCAGAA--TTTTTTAAAAAATGGAGCATGTGTAT-----TATGTGGCCAA a score=12201 s mm7.chr9_random 7836872 724 + 9745104 gATTTTTTAAGGAGTCCAATTTCATTTGAATTTGTCACTATACTTTGCAGAATTGAAGTCTAATACTCCTACAAATTTGGGATTTTTATATGATT----ATAACTATTGTTTACTCTGAATTGAATTTCCCACTGAGGAATTCTGATTTTTCTGGC-TTACTTTCTCCTTGATCTCTAAGATT---AAAAAAATTCCTATTAAATAACA-GTACTATTGA-----TTGATGTTAACAAAATATACCCA----------GTTTTTCAAATATCCATCC--------AACTTATATCTTGAGAGATTTA------------------TTGGTAATTCAGAAAAATAAGATAC-------AGTGGA------CTTAAATGATGAATTAATG--------AGAGGTCTCTTGGATTGTTCAAATGTT-----GTTC--ATTTAAACATTGTT-----------------TGCAGGTTTTCTAGCATAT-ATAGCT--------TTTCCTTATA-----TTTCATTCCTTCTCGAGATGAAGAAATGTTTGTGTTAATTTATGGGTAACATATGTAATAAAATGCTAAA-------CTTCTATTTCAAACAACCCCCTGAAGT------ATAACAGTTCAGATATAAGGAGAA---ATTTCTTCTTTACATAAGTTCCAGAAAAAAAAATGTGTGTGGTTGGCATATAAGTTCTTTTTTTTTTTTTAAGTACTAATACAGGAACTCAGAC---TCTTTCCTCAATG-TTCTATCCCATATATCACATCTAGGGAAAACCATGCATACTTGCCTTGAGCCACTGCAGGGAGAAACAGTGTGTCATAAGATTCTGTATGG s bosTau2.chr9 29001198 815 - 64650424 GATTCTTAAAGGAGTCCCATTTCATTC---CTGATCACTAGTATTTACAGAAGTAAAA-CTTATGTCCCCAAGAGTTTGAAAATTTTATAGAATTGTGAATGACTCTTGTTTGCTCTGAATTGAATTACCCATTTAGGTACACTGAGTCTTCTTGCTTTTCTTTCCTCCCGCCTTCTGAGTTTTCCAAATAAAG--CTATCAAATAAAACAAACTACTGAACATCTCTGTGTACACAGTATTTGTCTACAGCATATCTACTTCTCAAATATCCTTTAATGGTTAGATTTTATATCTTTATGATTCTAAACCAAGTTCTTAAGATGTTGATAACTTAGAAAAATGAGAGCTCTTTCTAAGTGAAAATTTTTTTAAA-----AATTGATGTCTCTTAAAAGAGTCTCCTTATTTGTTCAGATCTTTCCAGATTCCtatttaaaagttatttaaataacttttaataataaaGGTTTTCCTGTGTATAATAGCTATCTTACCTTTCTGTATGGGCTTCTCCAGGTCTTTTCAGTATGAAGAAAGACCTGTATT--------------ATATGTAATACACAGACaaagcaacttttgctgctgtaacaaagtctcaaatgtattaacatatcggttcaaatacaatagaagtttatttctcatccacagaaattccag---aatagatttgtctgattagcagatga-------cacttttgtcaagtggcaaaatggagacccagtcccttctttcct--gtgcttctgtcatattcaccatacccaagg-tgtccatgcatatttgcctcaaaccaatggaagcagaaatagcataaaagacggttttgcatga a score=9176 s mm7.chr9_random 7838052 372 + 9745104 tttggaattcagtcacatgatcacatttacctaaaaagaagactgggagataaaattcgatcagtaggtccaggaagaaaagaatggggttttggt-----CTTAATGATCCTTCAAAGTCA-TTCAGCTTGGGCTCAGGTCGTGGCTTTGCACTGGATTCCTTCACCATGATTTGTGCTTTAATTTCCGTGTCTCTTAAGGGATAATAAAACCTATTTTAATGATCATTGTTCAACTTAAATGGAATAATGAAATAGTAC-ATGATTAATACAAATACACAGTATAGCTAGTTTAATCTGAAAGCCTAAAGATACATTAGGTTTCATAATTAGCT--ATTTGTGGAATTGTATAACTTTCTTAGTTCCCAGAAACTTTTG s bosTau2.chr9 29002316 346 - 64650424 TGtggaacttagtcacatgaccacatctaagtacaa---------ggTATTA---------CAAGAGGTCCAGAAAGAAGAGGAAATGAGTTTCGTGAGCCCACGATGTGTGCttagagtcaggtaaatctgggttcaaattctagctctataaagaattctt--------atgtgagcctcaatttccttaccttttaagggataataaagctgatttcagcaattgtttttaagcataaatcaaataat--aataatacaatgatt------aacataTAGTTTTGTTAGTTGAATCTGAAAG-GTCAAGGTAAATTTTCTTTTATGATTATACAAATTTGAATAATTTTAGATTTTGCCTAGTTCCCAGAAAGCTTTG a score=36224 s mm7.chr9_random 7839750 821 + 9745104 ACATTTCAGGTTGTAAATACAGTTTCATTTGAACATACATACTATG-------CTATAATAAA-GTTGAATAGGGAGAGAAATGTTATAGATTTTTAATATGTC-TCTA-TGATTCTTCAGGTTTTAAG------------AGATTCTTCATAGTTC-TTGGGGAAACTT---TCTTCTTCCTATTTT-CCAGTTTTTGTTTGGTGAATCTATGTAACTGGGGGGGGGGGGCATATAATAACTACAATTCAATTCAGCCTTAGTGATGGCTTTCAAATCCTGCTACCACAA--GGGGATTAAACTCTCAAAATCCTCTTCAAAAGTCAAAAGGTTGCCAGTCTTATCTATTAAACCCTCATGTA-AATCCAGGTTCAAAAAAACATTTTGCCATTTTGAAATTAAAAGTCACCCAAGTCCCGAAATCCTAGAG------------------------------------------CAAACCATACATATTGTGTCCTCTTCG-TTTCCCCAGATAGGTTTTATCCTTTGTGTTTCCTCCATTTCA-----------------TTTTGTACCAGCAGCCATGGGATTTCTGCCAGAAATGAACTCAGCCACTTCCCTGGGAATGTTGTCCGGTTGCTAATTTCAGTGCCGGAACTGTGTTCCCGTGCATTCTGGCCTGTTTCCATGCATGCCTCCACTGGAGGAAAGGCTCTGACAGTTCTGAGGATAATGGTAAACACATGTAGCCAATACTGCTCAAGTCCTTCAGAGCCAGAAAGCATTAGTAGGTACTTCAGTCGCTGGCAACAGAA-AATCAATGTAAGGGACTCACTCCATCAGGCACCCAGGAAAAAAACACATGGGGATACCCAGTGCACAAGACGGACTTTTCTTCTTTCATTTttccttcctt s bosTau2.chr9 29002685 897 - 64650424 ACATTTCAAATTTTCAGCAATATTTTACAAAGACACTCATGTTACCAAGCAACCTATATTGAACATTAAATA--------AATACCATAAATTGGTAACATATCATCTAATGATTATCCATGTTTTAAGTTACTCCTACCAAGATTTTACAGATTACACTGAAAAAAATTGATTTTTTTCCCCATTTAACCATGTTTAGTTTGGTGAATTGATACAATTTGGGGGAAGTAAAA-ATAATAGCTACAATTGAATTCAACAATAATGATGG-TTTCAAATCATGTGACCACAATAGTGGAATGAACTCTTAAAATTCTCTTCAAAGGTCAAAAGGTTGCCAGTCTTAAGTGTTAAACCTTCATGCATAATCCAGGTTCATAAAAACATTTTCCCATTTCAAAATCAGAAGTCACCCAATAACCCAAATTCTAGAATAATTGGAAAGAATCATCAGGATTATTTTTTTATATGTTGTACAAATCATATGC-TTTTACCTCCTTCGGTTCCCCCAGATAAATTTTACCCtttgtatttcctttctttttctgttctttttttttttttttGTACCAGCAGCAGTGGGATTTCTGCCAGAACTGAACTCAGCCGCTTCCCTGGGAATGTTGTCCAGTTGCTAATTTCACTACCGGAACTGTGTTCCCTCGCGTTCTGGCCTATTTCCATGCATGCCTCCACTAGAATAAAGGGTCTGACGGTTCTGTGGATAATGGTAAACATATGTAGCCAATGCTTTGCAATTCTTTTAGAGCCAGAAAGCATTAGTAGGTATTTCAGTTGCTGGCAACAAAAGAGTCAGTACAAGGCACTTCAAACACCAGAACCCAAAGAAAACTACACATCAATGATTTTAATGCACAGCAAAG----TTCTTCTTTCATTCTTTCTTTTTT a score=13028 s mm7.chr9_random 7890595 301 + 9745104 TATGAGATGTTGGAGCTCGGTGTTGTCCTGACTAATCACTCCAGCCCGTTTTAGATAGAACAGGAGCTGTTCTGTGGGCTGCCTAATGGCGTATGACACAACATTTTCATTTTATATTTGGAAACGAAATTGCTATGAGACTAGGAATAACTCAGTGTGAAGCAGTGCTACCACCACCTTAT-AGACGGG-TCTACTGGCGGGTGCTGCGCAGTTCTTTAATAATATCCATGGCTTGCCCTGCCATTCAGCTACTACCTCCAATACTTCTG-TCTCAGGCTCTTTCT-----GCAGATGGAACAGGAAT s bosTau2.chr10 37956910 299 + 70001009 TATAAAACAGAAGAGTTCTCCATTGTACCGATAAATCACTCCAGCCTGTTTTAGAAAGAACAGGAACTGTTCTGTGGGTTGCTTAATGGTGTATGACACAACATTTTCGTTTTATATTTGGAAATGAAATTGCTGTGAAGCTACAAATATCTCAAAGTGGAA-AATGCTACCACAAACTTATCATACAGGTTCTATCGATGTGTGCCACTTACTTATTTAACAGCCTTTAAA---------GTCATTCAGTTACGACCATTAGCATTTCTGATCTCAGGCTGATCCTGGGAGGCAGGCAGAACAGCAGT a score=16504 s mm7.chr9_random 8372968 572 + 9745104 TCTTTCCCTGTCTGTCCCTGGGACTGTGTTTG-CACAGCACAGTTTGTA------GTCATCCTCCAGTCAGCTTTGCAGTGTTAACATTCTGTGTTGGAATATGTCCGTGCTTTCAGTTAACTGAC---CTTCAGTTTGGAAGAGATGTTATGTTTCTTTTCTGTGTAGTTGAAATCTATAGGGGTGGGGTGTGTGCGTACGCGTGTGTGGTGTTGTTACTGTTGTTAGAAATGAAGTCTTTCAGTTTAAAGAGTGTCAGGGTTTGCACATCCGAGAGCTCCGTTGGCCTGT---GTCCCCCATGTCCACTAGGCCAGGGCAGGAGGGACCTGAAGCCTCTGGAGGGGCGGTCGGACCCGCTCCCCATCGCCAATGG---------------------AGATGCACTGTGGGATTATGTGCGAACACTGTCTGGTAAGAAGTCAGT---ATCGACAAAGAGTGCT--------TGTCTCTT--AGGACATTCGAAAGCCAGGTTCCAACTCTGCAATGCACaataaattaaaaaattaattaaaaaaaaGTGATCTCATTGAAGTAGTTT--------------TGTTATCCTAAAGTAAAAG-ATGTAGGTAAATTATGGTTTGACTAATATG s bosTau2.chr22 4675955 573 + 48330986 TCTTTCCTTGAACCTCATCGGAGCTCTATTTGGAAAAGTGTAACTTGTATGGCAGATCCTCCTCCAATCAGATTTGAATTGTTAACATTCTGTACTGGAATCTGTCTGGGCTTTCAGTTAACTGACTTTTTTCAGTTTGGGGAAAGTGGTGTGTTTCTTTTCTACTTAGTTTAAACCTA---------------------------------ATTGTT----TGGTTAGAAATGAAGCCTGTTGGCTTAAAAAACGTCAAGGTTTGTGTGCCAAAGAGCTCTGTACGCCTCCATGGTCAGCCCTGTTCATTAGGCCAGAGTAGAAGGAAGGTCAAGCTTATGGATGAACGGTCATATACTCTTTCAATTGGCAACGGAGACTATTTTTGGACAAATAAAGACACATTGTGGAATTATGTGCAGACTCTTTCTGGTAAGAAGTCAGTTACCTCCAAAATGAATGTTTTAGAGACTATTCCTTGGAGAAAACTTGAAA------------------AGTGCATAA-AGATAAGGAAAAT-----AAAAATAATAATCTCATTGAAGTAATATTTTTTTCCCTTAAGTTTTATCTTGAAGTAAAAGAATGTAAGTAGAATAATGGCTGGTTAACATG a score=3199 s mm7.chr9_random 8373658 76 + 9745104 TTTCTAG-GGATGATGACAGCTGTGTCCACATG----AATCTGATTTTAGTG----GTAGATGCTTAAACTCTTCAGTGTCCTAG s bosTau2.chr22 4677310 83 + 48330986 TTTCTAGAGGATAATGATAGCAGTGGCCACATGAACCAATCTG-TTCTAGTGGAAAGTAGAAGCTT-AACTCTTCAGTGACTTGG a score=8803 s mm7.chr9_random 8375841 322 + 9745104 CTGCCATTTCTAAAGAA------ACCTTGTGTGTTTGCAGATCAGGGAGCAGAGAAGCATGAAGGGGCAGGCCAATCATCTGGGGTCACGGACCAGGAGAAGGAGCTGTCCGCCAGTGCCCTCCAGGCCTTCACGGTAAGAAGTGGCTTCCCT----CTTCACCCTCTTCGTCATAAGTCAGGAGTTAACTCAAAGGAGAATTAGGGTTAATTTTA-TGTAAATATGGTAGAAAGATTAGAAGTACTTTTGGACTACCCC----CAAGTTTTTGTTTTCATGAACATGTTTCAACTCTAGCAATGTTTGAGTCT-TCTAAATTTAGATTTGTAAATGT s bosTau2.chr22 4682179 292 + 48330986 CTGTTACTTCTAAAGAACTATCAAACTTGTGTGTTTGCAGATCAGGGAGCAGAGAAGCACGAAGGGCCAGGCCCGTCCTCTGGGATCACTGATCAAGAGAAGGAGTTGTCCACCAGTGCTTTCCAAGCTTTCACAGTAAGACACGGTTTCTCTTAATCTGTTCCATTTTTAGAATCTGTCAAGCATGAA-------------------TATTTTCACTGTGAATTT---------------ATGATCTTTGCTCTGTACTAATTTAAGAGTTAGCTTCAGAGAGTAGGTTT-----------AGGTTTAAGTTTCTTTAATTTTAGAGTT-TAAATAT a score=19488 s mm7.chr9_random 8376465 521 + 9745104 GTGGCTCTTATCTGCAGATGTAGAAAATACCCAACACGCTTGCTGTTCACTGACTCGCCTATTGCTATACGTAGGGGACTTCTGCTTT----AAAACGT--GAGGAAAGATGAGGGAAACAT-----GGAAAAGCTGTATTGTTCTTAAAGCTGATATGGAATTTTGTGTATATATGTGTGGTTTTGTTTGTCTTTTGTTTCTTTTTAGTCTGGAAATTATGATGCCTGTCTGCAACACCTTGCCTGTCTCCAAGATATAAACAAAGATGATTACAAAATTATTCTGAATACAGCAGTAGCTGAATTTTTTAAAAATAATCAAACAACAACAGATAATTTGAGACAAACACTTAACCAGCTGAAGAATCAGGTGATA------ATGAATTTAACTATAAAAGTTTGTTGTGTTAATCTGTGAAATACAAATAGTTAAGGAAAAGAAATGTTATTTCTTGCCTGATGTTGATGACAGAATTTCTACTG-ATCTGAATCCTTTGTTGCTATAGTTTTTGCATAGGTTTAAATGATATTCTA s bosTau2.chr22 4682560 476 + 48330986 GTGACTATTATTT------------------------------CATCTAGTGACT------TTAGTATATTTAGGGGGATTATATCTTTGTAAAAGCTTTTAAATAAAGATGAATGAAATATATTTGGAAATGAATGTAAAGTTCTTAAAGTTGGTATGTGATTTTGTTTGTGTAT----------------------TTTTGTTTTAGGCTGGAAATTACGATGTCTGTCTGCAACATCTTACCTGCCTACAAGATATAAACAAAGATGATTATAAAATAATATTGAATACAGCAGTAGCTGAGTTTTTTAAAAGTAACCAGACAACAACAGATAGTTTGAGACAAACACTTAACCAGCTGAAGAATCAGGTAATACCATACATGAATTTCATTATAAGGTATTGTGGTGCT-CTCTATGAAATTAAATTAGTTAAGTAAAATTAATGTGACTTTTTATTTGATATTAATAGCACAATTTCTAATGTATCTGCAACATTTGTATTAGTTTTATTTGTATA----CAATTTATTTTCTA a score=16334 s mm7.chr9_random 8379424 307 + 9745104 TTCTTTGCCTTTTGCTGTTTGTTTCCTTGCTGTTGTTAGAGTGCATTCTGCCCGGATTGTTTCA--GGTCCACTCGGCTGTTGAAGAGATGGATGGGTTAGACGATGTTGAGAACAGCATGCTGTATTATAACCAGGCTGTCATTCTCTATCATCTGCGCCAGTACACGGAGGCCATATCTGTCGGCGAGAAGCTCTATCAGTTCATAGAACCTTTCGGTATGTCCT-----------------------CTCTTTCTTGCAAATTTCTCTATTGCTTTTATCTAGATGACCTAAATCTGAGCTATATGTTAGCATTTAAAGGGGGAGAAAG s bosTau2.chr22 4684014 329 + 48330986 TTCTCGGACCTTTACTCTTTATTTTCTCACTGTT---AGAACACAATCTCCTTTGATTGTTCTATAGGTACACTCGGCTGTTGAAGAAATGGATGGGTTGGATGATGTTGAAAACAGCATGTTGTATTACAATCAAGCAGTCATCCTGTATCATCTGCGGCAGTATACAGAGGCCATATCCGTTGGCGAAAAACTTTATCAGTTCATAGAACCTTTCGGTATGTCATCTGTCAAGAAATTTGCCTATCTCCTCACACTTGCAAAGGTCTGTGATACTTGTGTCTAGATAACCTAAATCAGAATCCTTTATGAGTGTTTAAAGAAAGAAAAAG a score=14556 s mm7.chr9_random 8380966 390 + 9745104 GCTTTCAGTCATGGCTTTAGTGGCAT--CCTTTGCTTGGGGGAAGA----CATGCTTCATTTTGCAGGGTGGTGTCCTGTTTGTGGG-----TAAGCAGAGATGTATGCTCAAGCTTGGACTGTAACTTTTCCTATTTGTGTGTTTGTTTTGCC--AGAAGAAAAATTTGCCCAAGCGGTGTGCTTTTTGCTCGTAGACTTGTATATATTAACCCACCAGGCTGAGAAAGCTCTGCATCTTCTTGCCGTCCTAGAAAAAATGATTTCACAGGGTAGCGGTGGCAAAAATGGGAAGAACGAGGTGAGTTCC---AGGC------ACTGGACTTAGAAGTGTGACCAGTGTCTGTTGTATGAGGTAGTATCCTAGCAGCTT--ATGAGATGGCATTCACAGAAAGTAATATCTGAC s bosTau2.chr22 4687129 399 + 48330986 GCTTCCACACATGGTTCTGG-GGAATGAACACTCCTTTAGGTAAAAGCCTCAGGCTTTGCTTTTTAGAG-------CTTTCTGTGGGGGGAATGGTCTGAGATATT------ATTTTGGATTGTGACTTTTCTTGTTTTTTCTTTTTTTTCCCCCCAGAAGAAAAATTTGCCCAAGCAGTGTGTTTTTTGCTCGTAGACCTGTATATATTAACCTACCAAGCTGAGAAAGCTTTACATCTTCTTGCTGTTCTAGAAAAAATGATTTCACAGGGAAACAATAACAAAAATGGAAAGAATGAGGTGAGTGCTCTGAGGTGATCAAATTAAACTGTAAAGTATGTTTAGTGTTTGTGGTTATAAGTAGTATTTtaataggtttattgaaatataactcacataca-cagaatctgtc a score=17867 s mm7.chr9_random 8381776 1126 + 9745104 CAGTGTCTGCAATGGGCAGT--------------GGC-TGGGGCATTTTCCCACTGCAGCCAAGGGGC---TCTGCGGTCAGGACGGTGGGAGACTGAGGGCTTCCTCAGGAAGCTGGGCTTCAGTGGTGCTGGC-TAGAAAG-----AGACAGGGTCTGGCTTGG--------GCTTTAGAGGCGTAGT--------CTTGAGTGGCACCTGTGATTTT--AAATGGGTCCCTGGTTATGCTCATCTATGAGTTTCCTAAGTGTGCCACGTTAGTGTGCCACTCGACTCTCAGTCCCTAGAAGTGGGCTCTGCAGTGGCTTCAG---TTTGCAAATGGCCTCTGGGTACTTGACTTGGGCACTCTACTTAGCTCATCTG---------GAACTGAGTTACCGTCATAACAATCCCAT------TGACTTTGTTTC-CTATTTTATAGACTGGCAATAACAGCAGCAAAGATGGATCCAACCCTAAGGCTGAGAGTGCAGCTCTAATAGAGGCTGCCAAGTCCAAGATACACCAGGTACGCACGCTCACAGTGTGGGCGAGCGAGCGGCA----------------------GTGTGA-----GAGGCACGTGAGCAC-------------TAACTCAAGGCG-GTGCGCTTACTCGGATTCAAAGGCTTGGAGTTGAG-AGCTCAGTTAATCCCTCTAAATACATTTTGCTTGAAATA--TATACATTGTAACTTCTATAAATTA-CTGTATAGAACT--TTGAAGTAGCC------TGTAGTGTATGATAAAG--TAATATATTGAATTTTAAAATT--------ATCTTATGCAGATTTGAGTTTGTAGG--TTTTgctcaggggtagaatgatggcctgcaatacatgaagccttagtttctatccccagcaccacaagaaaaTAAAC-----------------------AGGAAACAG-----ATACTTAAGATAA-----TTTTAAAGTTGCATTTGCGTATGACTGGCTTTTGACTCTGTTGTATGCAAATGAGAGTTAATGTCCTGGACTGGCTAGCAAAGGTTGAGCCTGTGCAAGTGACCCACCCCTCTTACATGTTTCCATTCCTC-ATTGACAGTACAAAGTCAGAGGGTACATCCAGATGAAGTCCCTGAAGGCTTGCAAAAGGGAAATCAAGTCTGTCATGAACACAGCTGGAAATGTAAGTTCCTCCTGGACTTTCCTCTTGGT-----GGTCACTTTCTGGCTT----TCTTATTGAGACTGTGAGGATTTGTCAGTT s bosTau2.chr22 4688089 1224 + 48330986 cagtagttggggtgggcaggcttagttgctccaaggcatgtgggatcttccca----gaccagggatcaaacttgtgtcccttgcattgcaaggcaga----ttcttcacca--ctggaccatagggaagcccACAGAGAAAGTTTTTAAAGAGGGAATGACATGATCTGTTCTGTTTTAGGAAGATAATCAGTTTTGCCCAAGTAACATCCCTGCTTTTTAAACCTAGCCCATCATTATACGCAACTGTGAG---CTTAAGAGTTTCCTGTCA----CCCACCC----------------AAAtgggacctg----ggattcagaattttgaaaatgttctctaagtg------------attcAGATTAGCTCACTTGTAAATCAGTGATTTCAGTTATGGTCGAAAATATTTAATCTTGGATAACTTTGTTTTACTACCCTACAGACTGGTAATAATACCAACAAAGATGGATCTAATCATAAAGCTGAAAGTGGAGCACTAATAGAAGCTGCAAAGTCAAAGATACATCAGGTA-----GCGTAAAGTTTAAGAG---GAGTTGTACCTGACATATATTTACTTGTAGTTATGAATAATGAAGGATGTGATCATTGGAAACAGTAAGTAATTAAAGGCATGCATGTTTA-TTGGTTTTGAAGTATTAAAGTTTAGAAGCACATTTA-----TCTAAGTATATTTTGCTTAAGATGATAATGCAATATTATTTCTTTTAATTGTCTGTAGAAAATTGAGAGAAATGGCCCAGGAACGTATTGGATGATAAAAATAAGTTTGTAGAATTTGAAAATTCATTGTTAACCATATACAGTTAAGGATTGATAAGATTTTTGTTTGGAACTTAGAT-ATAAATTTCATCA-ACCATGTTTTAGTTTTTAAAAGT-GTATTCCAAGAGAGAAAACTTTTTTTTTTAATGTATATTCCAAGAGTACAGTAAAAATAATCAAAAAAAAGTTTTTTTAAACCCACTTTCACAAGTACCTGG--TATAACTGTGTTGTGAATAGATTGGGTTTAATTTTCTTAACTAGAAAGTAAAACTTCAGCATGTGTAAATCCACCACGGTTCCTACATACTAGTGTTTTTCTTTTAACAGTATAAAGTAAGAGCGTATATCCAAATGAAATCCCTGAAGGCATGCAAAAGGGAAATCAAGTCTGTCATGAATACAGCGGGGAATGTAAGTTTCTT---GACTTTTTTTTTTTTTAATGAGTAGCTTTTATGTCCCAAATTTTATTTGCACCGTAGGTATTTGTCAGTT a score=13720 s mm7.chr9_random 8385484 433 + 9745104 TAAGGTGGTCACTCACAGGCTTTTCTCTTTGAGACTTTGGTATTTTAAATAACAGGTCAGTGAGCATTTAGAAATTGT--CTTCTGTGGCAT-GATTTAACC--GATTGATTTATGTCCTAAACACTTCCATGCACAGCAGTATG-TCACAATCGTGCAAAAGACAACTGAAAACAAATT-TAAATCACTTTTATATTCCTTTACAGTCTGCACCTTCCCTGTTTCTTAAAAGCAACTTTGAGTACTTAAGGGGCAACTATCGAAAAGCGGTGAAGCTGTTGAATAGTTCAAACATTGCCGAGCATCCAGGCTTCATGAAGACAGGTAAAAGAAAACTGTAAAACTTTAGT----------TGA----TCTATTCCTTCTTGCTTGGGGTTCCTCCCACCTACACATCCCATTCTTCAGAGTGACTTCCATTCATTTTTAGGTAGAAGTGTTCT s bosTau2.chr22 4690383 425 + 48330986 TAAAGTGCTGTCTGCCAGGTTTCATTGTTTTAGATTGTGA------AAACAATAGGAAAGC-------CAGAGACTGTAGTTTTCATGACCTTGACTTAACGTGGTTTGGTTTTGCTGTTAACCGCATGCCAGTGCAGTGGTGTGATTATGATCTCGCATTAGGTGTGTGAGAACAAATTGTAAGAAACTTGTGT-TTTCTTTACAGTCTGCACCTTCCCTGTTTCTTAAAAGCAATTTTGAGTACTTACGAGGCAATTATCGAAAAGCTGTGAAACTGTTGAATAGTTCAAACATTGCCGAGCATCCAGGATTCATGAAAACAGGTAAAAGAAAATTGTGACGTGTTGGTGTTTTCTTCCTGATCCTTCTGTGCCTTGCTGCTTTTTGTTC--TACGCCTAGG----CTGCTATTCCAAGTGat---------tttttaaatgaaaatatttt a score=14417 s mm7.chr9_random 8389235 195 + 9745104 AACAGATTATGTGTGTAAAGTAGTTTGTGTTGTTTCCAGGTGAATGCTTGAGATGCATGTTCTGGAATAACCTTGGTTGTATCCATTTTGCCATGAGCAAGCACAATTTGGGGATTTTCTACTTCAAGAAGGCTCTGCAGGAAAATGACAACGTCTGCGCCCAGCTCAGTGCGGGTGGCACTGATCCAGGTGAAC s bosTau2.chr22 4693091 195 + 48330986 AGTAAAATTTGTTTGTGGATAAATTTGTGTTTTTCTCAGGTGAATGCTTGCGCTGCATGTTCTGGAATAATCTTGGTTGTATCCATTTTGCCATGAGCAAGCACAATTTGGGAATTTTCTACTTTAAAAAGGCTCTACAGGAGAATGACAACGTCTGTGCCCAGCTCAGTGCAGGCAGCACTGATCCAGGTGAGC a score=4366 s mm7.chr9_random 8390179 136 + 9745104 aGCCTTAAAGAAACTTGCTGAAGTTTGT-CATTTACGTTCAGATTATATGGATCTTTGATCAGAA---TTTAAAATCAAGCATCTTTGTAATTTTTAAAACCATAAACACCTATTTAAGTGATGAAAAATGTATTTTAAA s bosTau2.chr22 4693861 129 + 48330986 AATCTTTAAGCAAATTTATGAAGTTTATTCCTTTATATTCTTAGTATATGGATCCTTGATCTGAAATCCTTAAAATCAGGTAATTGTGTAGCTT-----------AAAGACTATTTAGTTGATGAAAAACATATCCAAAA a score=17520 s mm7.chr9_random 8390390 519 + 9745104 GAAGGAGGGCAAGGTGCTGTAGTTCAGAAAGCCAGTGACTCACTCAGCTCTTTGCCTCCCTGAAGCAACACTGCCAGAAGAGCTGGCCCAATCCTGGG------CATTTGTGTCCTTCCTAGTACAGACATCTGACATGAGTGTCAAG--TACTTGGGGAGCTAGGCATGGAGAA-----------------------ACCACCTCAGA--GAGAAC----CATTACAGTGTCACATTGG--AGTCACTG-GTACTAAATATGGAAGTGTTTAC-------------------------TTGTCTATTCTC---CACATTTTATCACAAGGCAAAAAGTTTTCTGGAAGACCCATGTGTACATTGCTGACCAACAAAAGATATGAGCTGCTCTACAACTGTGGGATCCAGCTGCTGCACGTCGGGAGGCCTCTCGCTGCCTTCGAGTGTCTGATTGAAGCTGTTCAGGTGTACCACGCGAATCCTCGTCTCTGGCTACGGCTGGCTGAGTGCTGCATTGCTGCCAATAAAGGGGTGAGTGCTGCTTGAGTAGCTCTTTGAGTCTCTG-------TTTCTCCTCTTCTACACTTG s bosTau2.chr22 4694724 580 + 48330986 GAGGTAGTGTAAGGTTCATTGG---AGTGAGAGAGGGTCCTGTCTCGGTCTCTGCCTTCCTGGAACATTGTTGCCTGAGGAGCTGGCACG----TGAGAAGACACATCTCTGGCTCCATGAGCACAGACAACTGAGATGCCTCTGGAGGATATTTATTGGGTTGGGGGTGGAGATCATCATTGTGGTGGGAGGTGTTTACACCTTCAGATTGAGGATTGGGCTCCTCGGTGTCAGATGAGGTAGTGGTTGAGTACTTAGTGAAGAAATGTTTTCAGTGGAGCTGCTATTTTAAATCTAATAATTTGTTCTCATCTGCTTTTTATCATCAGGCAAAAAATTCTCAGGAAGACCTATGTGTACATTACTAACCAACAAGAGGTATGAGTTGCTGTATAACTGTGGGATTCAGCTGCTTCACATTGGAAGGCCGCTCGCTGCATTTGAGTGTCTGATTGAAGCGGTTCAGGTTTATCACGCAAACCCCCGCCTCTGGCTGCGGCTGGCTGAATGCTGCATTGCTGCTAATAAGGGAGTGAGTCTC-------TATCTTTTTGAACCCCCACCCCCACTTGCTGCCCCCCTCCCCTTG a score=26203 s mm7.chr9_random 8442193 964 + 9745104 CAAAGAGTAAAGGATTCAGTTAAAAACACTGGGTTTAATATTAGACAGATATTGTTTTCAAACCAGTAACTTTAGAAACAAGACTGTTTTATATGTAGAGTGGAG--CAGCATCA-TATGAGGAA-GAATGAA----TAGCATACAGCCAGGACTAACAATGGAAAACATTATTCTAGCTGTTTTTA--------------CAGGGGAACAGTATGGACCTGTCCATCACAATCCAACTGGGAACCCATATTATACATGCTTTCAGTCCATGAAAGAGTACAGAAAAATCCAGATGGCGATCTCCAAG--AGGATGTGCACCAGTGCTGCTCATTGAATAAG--CAACAATTCTCCTGTGATCAAGCCAGACACCTCTACATACAGCACACACAGGAG---GCAGCAGCTCACATCCACCCCTTCCATGCTTTCTAAGAAGTGTAATGGCCTCAGCTTCCTTCCTGCCT----GTGAAA--AAGCAGAACGAGCATTAAGTTTATTTCATTGTGCTGCCAGCATTTCATTTCCCTGGACTCTTTCTCTTGGAATATCCTTCGCTGTTTCTCATTTGTCAGTCTTTTCCCAGTGCAGCTTAGGAGATCTTAGA-GACAGATGCTGAATCAATATTTGAGCTTTATGTGGGTCCTGGAGAAG-CCTGACTACACAGCAGTGAGATGCAGTGGCCTGAAGCTGCCGTGG--AAGGCCTTGTCCAAATGGGTTAGCCCTTG-ACTGAAGAATATGACTAAGCTGCAAACCCAACTTTGCTGTGTTTTTTCTAGAG-CTCAGAAGGAC------ACTTGGCATTTG---------------TTTTTTAGAGTTTTTG-AAACAAAACCACTACCCATAAAGATATAGAGTAACCTGTTCACTCACC-------ACAAAGGCGTAAGAGGGCCTAAGGTCTGTCTAGTCTTA-CTCTGCTATAGGACCATAAGCAAACCATTG--CTTTCTAGTCT--GTTTTC--TCTTAAACATTGGCTGATTGG---------TTTTCCAAAGTTACCTATAG s bosTau2.scaffold511 385571 1025 - 443832 CACAGagcacagg-----gttaagaacactgactctagagttagggagacgtgatttcaaaactggctctcccggaacccccattccctcacctataaaacgggggtaagcgctgctgtgaggagtgaatgaagtcatgcCAAGCCACAGAGCCCCAGACGGGCAGGCGTCACTCAGGCTGTCACTGGCGCTGGTGTAGCTCAGGGTGACAGAGTGGACC-----ATTACCATCAGATTAGGGGCTTACATTATACATTGTTTCAAGCCGTAAAATACTAATGCAGAATCCCCCTAATAGTCTCAGAGGGAGGCTACGGATCAGTGCTGTTTATGGTATGAGAGCCATAATTCTCCTGTGATCAGGCCAGACACGTCTATGAACAGCATCTACAGGGGAAAGCAGCAACTGACATCCAGACTCGCTGTGTTTGCTAAGAACGGTAATGGCCTCGGCTTCCTTCCTTCCTCTCGGTGAGCCTGAGCAGAACAAAAACGGAATTTATTTCATGGTGCTGCCAACACTTCATTTCCCTGGAATAATTCTCCGGGTATATCCCTAGCGGTTTCTTATTTGTCAGTCCTTTCCCAGTACAGCTGAGGAGATCTTAGATGAGAGATGCTAAATCAATACTTGAGCCTTATGCAGGCTCTGGAAAAGCCCTGAAAACACA----------GCTGCGGCCCAAAGCTGCCTTGAACACAGCCCCGTCCCACCGAGTTAGCTCCTGCCCTGGAAGTGAGGCCTGGGCCGCAAGGCTACCTCC-CTGTGCTTTGCCCAGGGTCCCAGCAGAGCCCAAAGGCCTGGCACTCAGACGTTGCAAACGCCTGTCTCATGCTCACTGCCACCACCACCATACCCCACCGAGACCTGGGGTGGCCCTTTCACTcactggctctgaagtgggaatcaacgggccagagttctgc----tctgagcattgatgtgtgaccttaagcaaataatttacttctctggtctcagttttccttcctgaagatgggCTGATGGGGATATCGCATCTCCAAAAGTTACCTCTAG a score=29901 s mm7.chr9_random 8512522 1417 + 9745104 CATTTTC---TAGTCTATTTAACATAAAG--------TCTCCACATATTTCTATTGCAAATAAGGGTTCATCACCCATGAGGAAATCCCAGCATATAACTCTCTG-CAATGGTACACAGTATAATCAAATATTAGAAAATAGTAC--------------GTTACAGAAAGGATATATGTCAGCAT----------CAATATTAATTTCAAAAATTATTTGGA--GTGAAATAACCTGATTAATTTATGTTCCCAACGGTGGCAGTGGAGACACTTT--CTGTCTCAGCCTTTTCAGTGGATCTGCAAGGGTTAATTCATAAGAGCTGGTCATTCTCTTTGATTTTAAGGGACACTATACTATTTTCCCGGTGT-AATCTACTAGA--AGAGGAATTTGTAGAAACTGGCATGGTCTGGATTATCTGCTTCTTCATCTCAGCAGCTCCCAAAGTTTTAATTAAACTGAGTGTAGAGTGATCTCTTGTACTTAATAAAGCAGTTATTGCATTTCTGGTTTCCTCCCAAACATTTATAAACTCTTAACTCCAAGCAGAACCTCTGCAACAAGAATGCTGTTGTGGGAGTTTTTACAACATGCAGCAAAGTCTGGTAAATCAGTTAAAAagagagagagagagagagaaagagagagagagagaaagagagagagagagagaAGTCAACAGAAAAAAAAGGCTAATTTGAACTGAGCCATGGAGAGTTTGTTCTCAGCAACAGTAGATGCCTAGCAAATGTCTCCAGTGTTGTATATGCTATGAAATGATCATAA---GCTATTGGACTTCTACAGAGGTGCAGTAGGATAATACAGC-CACACTTGACCACTATATAAGATCAAG---TGAACGGAGAGCTGCATGTCTGCAAGCAATGCCATTTTGACTTCAGGAATATTAATT------------TCACACTCATTTTCCAAGTTGTAAACACAATTTTAAAATGACTAAACCGGAAGAGAGATATGTAGATCTTAACAAAAGGAGCATGCCCCC--------CCCAAAGCTGCC-AACATTCCTTCCCAAATCAGGCCAATAACTGACACCCGTTTCTAGAATATTTT--------------CCTGGGAATGCTACCCTTCATATAG-GCAATGATATTTCAAACCAGTT-AGGACCTTAGAGAAAATAGTATTTCAGATCTCTTATAAAAAGTTAGC----ATATGGTGGAATGTATCTAAAAGTCATATCACAAC--TCTAGTTTT---------TAAAGATTCAATGAAGAGAAGCCTAAGAAACGATAAGGTTTTGTCTTCCCAGTATGTGGACAATGACTTACCAGAGAGGAC--ACACTATGTTTAACACAGTTCTTGGCACAAACAACGTAATCTGTAATTACTCATTGAGTATGACTTAC-------------------CTTGATAAGTAATATTTTCATAATTTGCGCAGCTCATT-----CATGTGGATAGACAGAGAAAGGTAGAAATTGAGGAAATGGTACAAAATCATTCAACTTTTTGGGG s bosTau2.scaffold3800 63529 1462 + 75456 CATTTTCCATTAGCCTATTTTATATTAAGCTACAAATTCCCCATATGGTT-GATTGGTATTAAAGTGCCATCAGTTATGAGGAAATCTCAGCATTTAGCTCCATATCAATGGAACAGATTATAAGAGAAATTTAGAAAACAATATCTGTTGAAGGATAAGATACATAAAAAATGCATATTATCATACTCCTGCTCTAACAAAGAATTTCAAAAACACTTGAAAAGAGAGATTTGCTGTTTCATTCATGCCCCTGAAGATGGCACTGATGATATTAAAACTTTCTTAGTTTTTACAATGTCCCTGTAAGGGTTAATCTGTGAGGTCTAGCAGTTTTCTTTGATTCCA-GGGACATTACACTATTCTCAGGGCATGAACCCAAGAGGGTAGTGGAATTTGTGGAAACTAGTTCAATCTGGGCTATCTGTCTCTCCATTGCACCAGCTCCCATAGTTTTAATTAAATTCAGTGTATAGTAATCTCTTCTACTTAATAAAGTGGTTATTGCATTTCTGGTTTCCTTCCAAACATTTATAAAGGTCT-ACTCCAGGCTCTACTTGAGCAAAAAGAATGCTGTCCTAGGAGTTTTGAGAATAGCCGGGAAGATACAGTAAGTCAAT-------------GCATGTAGAGGAAGA---------------------------------CAACAGAAGAGACCATCTGATCCTAAGTTA---ATGTGGCATTTTGTTTAAACAATAGTAGGTTACCAATAAGTTTGGCCTATGTTATATATGTTAGAAAAAGATCAGAATATGTCATAGCACCTTCAcagaagcatagtgctttaatacagtggaaacttttcagtcagatgaggtcaaggtatgaac---------cttggctctatgcactggcattgtgactttacaaatattgtttattctctctgaatcttgtttttttttttagttgtaaa-acaa--gaataatacctaAATGAATAGACATATATGCAGAACTTAGCAAATGGTGTATACTCTCAATAATGACCCAGATCTGCCTAATAATTCTGCC--AACCATGTTTA----------CCTTTCCTTAAATACCTCATGGATACATGAAACCCAGAAAAATT-CTTAGCATATAATATAATTATATTTTGAAAATGTTGAAAATCTTAAAGTGAATAGAACCTGAAA--TCTTAGCAAGATTTCGCTACTGCAAAGTGGAATGTATCTAAAAATTCAGTCACAATTGTTTTGTTTTTTCCTTCTCTTAAAATATAATGAGAATAAACCTCAGAGA--ACACAGGCAAATTTACCCAAGAAGGAATTTATAAGTCACCATGGAACATTGACAcccagcctagcaaaatctgtggcacaaacctggcattc--aaattgcttgttgaatatgaaATACAGTGTTTCTTTCTTTTTTTTTTTTTTGGTAATGATTTCTTATTTTGTTTGGcccattatacccagataaagagacagagtgtgagagaagctaaagagctagttcaaagtagcccaacttgtttggg a score=7703 s mm7.chr9_random 8516984 1369 + 9745104 TCTTGCCATTTATTACCCTTTTCAGCTATGGATATTAAAAGCCTATATATGGATACAGAATAATTTATTTGAAGA-GCCTGCATTGTTAGAGAG-----TTGTTTCCATAAA--TTTAGAGCCTGTAGAATTTACCAAAGCAGTATGTCACTTAAA--TGCTTCAAAAATGGAGTTATGAATGCTGGTGAAGATGCCAGCATTTACTGTCAGTTTAAGTAAGTGCATGAGATTGAAGACTGTTCAGAGGCAAAATATTGAAATGAGATCTATAGAAACCAAACACACAGTGGCCAGAGATG--AGTCTACTCTCTGACTCTTT---GAAGCCTAACATATGTTTAC-TTCCAGAATGATCATTACCGAGAAAA---TGAATCCCCGATTCTTCAAGGATCAGCCAGGGTCACAAGTGAATGCAGAGGCTCGGAGTTAGCAGCACT-GATACCCAAAGGAGCCAGACTTTAGAAGCTTAGTGAGGGTCTGTGAAAAGTATTAAAATTTCATGTCAAAGACGCTCTTTTTGTTATTACCACCCCAtctctctctgtctctctgtctttctgtctctctctctctacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaGCCTGAATGAATTCATTCTGTATTCTATAAGGGCTTTGCTATT--GATTAGAAGCCATCTATGGTAGAGTTGTTGTTTTGTTTTGTTTTTGGTTTTTGTTTTTTACTTATGTCGAGTCTGGAGAACACTACGACACATTTTTCCTGCTTGGAAAGGTATGTAGACCTTGTCTGGCATTACACTATCCATGAAAGTTTATCTTTAAGCCTTAATCTCATTAATCCTTATTCCAGAttttctttt----tctttttcttttgtttttttttttCATTCTTttttttattagatattttctttatttacatttcaaatgctattccgaaagttccctataccctccccctgcatgctcccctacccacccactcccact--------tcttggccctgg----cgttcccctgtactgggcatataaagtttgcaataccaagaggcctctctttccaatgat--gaccaacgaggccatcttctgctgcatatgcagctagagacacgagctctggggttactggttagttcatattgttgttcctcctatagggttgcagaccccttcagctccttgggtgctttctctagctcctccattgggagccctgtgttccaGACTGAGTTATTTTACTGTATGTGAACATTTGCTCAT---------TTGGTGAATGTAAACTGTATAGATTGTGTCTGGTTTAGACTTTGCTTATATATATATATATGGACTTAGTGTATTGAAATTTAAGAAAAGATTTCACTTACACA s bosTau2.scaffold3800 67184 1100 + 75456 TTCTGCCATCTAGATTCCT---CAGCTATGATTTTTAAATGAGTGTACATGGCTGTAGAGTAATTTATTTAACCATATCTTTATTGTTGAAGAGGTAAATTGTTCCCATAAAAGTTTA-----TATAGATTTTACACAAGTAATATATTACCAAAGCTTCATTTAGAAATGGATTTATGAACACCAA-GAAGGTGCCAGTATTTACTGTCGAATT---TAATTATGTTAGATTTAA-------TAGAGGATAAAAAT-AAAACATGACCTATAGAAGTAAAAC-TAGAGTATTCAGAGAGGTTACTCAGTTCCCAGATTCTTTTGTGGAGCCAAATTTACCTTTAGGTTCAAGGATGACCATAACCAAAAAAAAAAGGAATGCCACATTTTGCAAAGATAGATCAGGGCCGTAAGTTAGAGGAGACACTTTGAATGAGCAATATTTGGTGTTCAGAG-ATCCTGACTGCACAGGTTTTGTGAGAGTCTGTAGAATACACAAAAATTATATTTGGAGAATG--------GTTGTTGCCTTCTC--CCCTTCCTATCTCTGGG-----------------------------AGCCACAC-------------------------------------------------------------------------TGTTTTATAATGGGAAGGTCATTAAGACTAGAAAGGA---------------------------ATACATCACTCTTGGTTTTGAGAAGTATTAACTTTTGAGGATACTGTGATACAATCT-AATGTTTGGAAAAA-ATCAGTGCAATGGATATCATTAAGGTTTTTATGAAC-TCTCTTTTCAAGCTTCAACTCCATT----TTTAATCTAGGCTATTTATGGACATAATTATTTGTTGTTGTTATTGTttagtc--------attaagt--------------catgtctgactcttttgcgaca---ccctggactgtagcccaccagactcctctatccgtggatttcttcaggcaagaatactggagtgggaacccattcccttctccagggtgt-----------------------cctcccaattcagggattgaaccaaca---------tcttctgcattgacaggcaga-------------------------------------------ttcttta-----------ccattgagccactaggg------------------------aagccc----------ACCTAATTATTTACCTGTGCATTCACATCACCGGACGTGGTGGCATTAGTGAACATCTATTCCCTAAACTGGATCTGGGTTAGATTTGAATACTCTGTATGTG---GGAGATAATTT--TGAAATTATAGGAGGTATCTCACCTTCACT a score=16942 s mm7.chr9_random 8518431 972 + 9745104 ACACAAAACAACCTCCACAACCACAAATTGTCCAGCCCCCAATGCCAACATCACTGCAACCTAGAAAGCGAGAAATATACAGT-----GAGTCAGCTGATGAGGTAGTAGTTTCTAATGT----TTAGTTCATAACTTATTTTTAAAATATTTTAACAATTCTTCATAAGTACTTTAAAGGTAGGTATTACAATGACACTGCCTTTCTAAATGTGTTTTGTAAATTGTTCAATAAATA-------------GTAAACCTCACTTGCAATGAATTCATTACT-----------GGCATTCACAAGGATAGAATT---TCCCCTCTCCTAAGCATCCCACTTTTACAACATATTTCCT-GTTTCCATAATCGATTCTAAAGACTGAGAAAATAAAGTCATAATTCT----TAATTTCCAAAACATA---CTTTATTTTTTC-------------------TTTACTAGTAGAGTTTTCT-TTGCAACTCAAAGGTAGATTAGTCATATTTACATCTGGAAGTGTGACGATTTCCATGGAGAAGTTTTTGCTAAGAAATTATGCGAAGACCTCTCAGTGGCAGGAAATAGTTCATATAGAAGAGAGAGTTCCTCTCTGCCTGGTAGGAAAGAAGGCAGGCCTAAGTTAGTGCTTA-TTCTTAATTCT--CTTTGGCCCCCTCTCATGTCTGTTTTTCTCTTCATCATCTAAACTTCTTACTGTTCAGATTGGGTGGAAATTAATAACAATTCAAAGTCAGAAGCTCTTAGGATAAAATTGCTAAT----------------GTATTCCGTGATCTAGCCTCTGCTTG----------TGCTGGTCTCCTCTGGGCACCAATCTCAATTTTAAAGCAGCCATT-CCAAATGTAGGTGAACTTTGAAGT-AAAATGTGTAGGGGTTAATGTAAGCACTCCTGAGACAATGCCTCAGATATTCTGGCTCTTGTATAAAG----GTATTTCATACATTTTAAATGCACTCTCTTGGTAA---TGGTTCAACCCCACTAGAATCTGTGACATATGGCTCTAAAATGGCAGACTTTCTTCTAT s bosTau2.scaffold3800 68425 1044 + 75456 acacaggacaatccctacaacagagaattcttcatctctaaatatcagtaacgccgaggctgaggcaccatgCAGGAAGCAGTCCCATGTAACAGCTGGTTTTCTAACAGGTTCTGATGTCATTTTAACTTATGACATATTTAGAAAATCTTAT---------------GCATTCTCAA--CAGGTGTTGGGATGTCACT--TATCCTTAAGACTTTTTGTGCAGGATtaaatatatatttatatatacatgtaaata-catatgtaATGGATTCCTTACTCTGTCAAAATTGATATTAGAAAGGTACAAAGTGAGTGGCCTCTCCTGAATACCACACTTATATAATTTATTTTCTTACTTACATAAGCTATTCCACAGACTGAGAGAAAAATGGTGTTCTTCCCCCATAATTTTCAGATCATAGACTTTTATTTTCTTCCTAGAAACAACGACCATGTCTACCAGCAGAGGCTGGTAGTGTGACTCAAAAGAACAGCCGTCAGATTCACAGCTTGAAGCAAAATGCTTTGATTGCAGAGATCTTTCCTGATAAATTGTGCTCCGTCTTTGCTAGGGTAGAAAACACTTGAAGTAGCAGAAAGTGTTGC-CCCTGGCTGGTGGGGGAAGAGG-AGGGATAACTTAACACTTACTTTTCCATCCTGACTTTTTATTCCTCTAGTTTTCTTTCTGCCTTCCATTTCCTAGAACTGTTAATGCTCAGCTTGGCTGG-AATTAATGACACGTC-TGGTCAGAAACCATCAGGAT-AAATTGTCACTTTATGCACATCCCGCAGTTTTTCATTTTATGGTTTCCACTTGTCTCTCTCACTTCTCATCTACTCTAGACTCTAAGCACAATC---AATcagtaattcccaaatgtgagtgagcattggaatcaaaatgggtagacattaacataaagatttctaggactacttcacagatattttgactctggcatagagcctcaggatccataccatt--aacaaacagccttggtaaatctgaaataatgctactggAATTTATAATCCATTGCTCAAATATTCCAGAActttcaccat a score=5546 s mm7.chr9_random 8741247 147 + 9745104 AAATTCTTTGAAAATTATCATCCAGATCTTGCAAATATCTTTTCTGAATGAGTGTTTAACAGCAAGAAATTAGAAAAAT---AGTTTTATTCATAAATAC---AAAGGAGTAATTTCTCTAAAATTTCTATGAGTCAAAATGATTTTACTTTC s bosTau2.chr29 2266841 150 + 45822729 AAATCCCTTGAAACATATT---CAAATCTTACATAGATTTCCTCCAAATGACCTTTCAGCAGCAATAATTAAGACAGAACTAAGTTTTATCCATAAATATGTTAGAAAGGTAATTTTTCTAAAACTGCTATGAACAAGAATGACTTTGTTTCC a score=26816 s mm7.chr9_random 8742063 774 + 9745104 aataataaataaatTCCCCAAAA-AAGGATAGTCAATGATTTAAGGCTCAGGACATTAAATATTAATAGTTCACAAAATTTATTCCACTTCTGAGCAAGCATCTTTATTGATCATAAGCATTACAATAAGAGTTAGGGTATAAAAAATGCATGTAGTCAGAGATATTGTGTACTTAGGGAGACATAAGTTATTGTGGACCTTTTCAGAAGTCATATGGCCTTGTATTAAATGGTACTGTGGAAATAAAATACTGTGATGAAAAGTTTAA--TATCCGTGTTGTAGGAATCACACACAAATAAAG-AGACGACACTGGCTATGAAAGACTTTAAGGATAAAAGTGCAGATGAGAAGCAATCATTTAGTTAGAGAAACCCTACTGTATTTTGTAAAGAATGTGAGGTTTTGAGGAAATATGGTTGTGGAGGGAAAAGGCTT----TGTTATCACTTCAGCTTGCAAGAGGCTGTATGGTTACTATACTCTAACAGTGTTCTATGAGCTAACAGTCTT------------------TGCATACAAAGTGTTCGATATATAGTTGGCAAGCTGATTCAGTTCTAGCTTTGATGAAAAATCAACTACTCTTGGAGTTTATTGAACAGAGATTAA-----ATTTTTTAGATGCTTTTGAGAAGACAGAATAAACTAATTTTTGTGGCTTGTCAT-----GCTCTATTTCTTCTTTCTACT--CAAGTGGTTTGCAGTGA--GCTTAACTGTCATTCTCAGTATTAATAAGCTACTCTAATTTACAGAGAAAA---ATTCAGTAATATTTGGATACATCTTTAT s bosTau2.chr29 2267007 776 + 45822729 AATAAAAAAGAATTTTATTGAAGTAAGAGTGGACAATGATTTAAGTTTCATGGCATGAAATATTAATAGTTCACAAA-TTTATTCCACTTCTGAGCAAGCATCTTTATTGATCATAAGCATTACAATAAGAGTTAGGGTATAAAAAATGCATGTAGTCAGAAAAATGGTGTGCTTAGGGACACTTAAATTATTGTAGACCTTTTCATCAGTCATGTGGCTTTGTATTAAATGGGAATTCAATGATAAAATGTTGTGATGAAGAATTTAACCTGGCAATATTATATGAACTGTACACAAATAAAGAAAAAAAAATTGGTTGCAAAATATTTTAAGAATAAATGTATAGATTAGAAATAGCTATTTAAGTAGAGAATCCTTATCATATTTTTTAAAGAATGTAGGGTGCTGA------------------AAAAAAGGTTTTAACTATTGTTTATACAGACTGAAAGAAGTTTTGGTGCTCTTATTCTCTTATC-TATATTTTGAGGCCATAGTTTCTTTGTATATTTTCTGAAATGTATAAACACCATTGAATTCGTGGCTGGCATGCTGACTTAGCTCTAGTTTTGTAACAAGATCAGATAATCTTGGTGTTTGCATAAAAGTGGTTAAAGATGATTTTTT--ATGATTTACATAAGACTGAACAGTCTCATTTTACTGACTAGTCATAATCAGCTCTAAT--ATCTTTCTGCCAGTAAAAAACTTGCGTTTATTGTTTGGCTGT-------AATGTTA----------CCAACCTAAAGAGAAAATGCAATAATTAATGGTTGTATGCACATATAT a score=8442 s mm7.chr9_random 8743270 937 + 9745104 TTCTTGTCAATTCCGTCCCCTTTAGCAGTCTCCTATTGCATCATCCTATTGAGAGACTC-------GCATTCAGAGCCTGG-----------AAACACTGCTC-----CAGTTGACTGGCATAAAAAAATTGTACAGCAAAAATGGGTCTTTACTATCTACAGCCAAGAGTGCTCCAGTGAGCCTCCTGCTCTTCAATCTAATTTCACTTCTATTTGAAAAATCTT-GGAACTCATGTCAGAGCCTCACAATAAGCTGCTGAGTCTTATTCAGGCTGGAGGCACAGGTCAGGCTTGTGTATTTGGGCTGCTCAGTTAAGTG-----------TAAAAATGACCATTTTCTTTCTGGGTAGTGGCTTT--ATGTTTGT---CTTACTTCTTG--GGCTTCATATTCGGTCAGTGTCAGGA--GATGAT-GCTACTCTTTGCTACTTAAGGGATTGTACAATATTTTCAAG-----GTGCTGTCTAAA---CATCTCTTTGAGGATGGCAAAGAATTGCAATAGAGTCTGACTTTTGTTTCTGAGTAAGTTATGAAACAATTGATAAATCTAACG-GGGGCCATGAGGACAAGAGTCAAAACTAAACCTTTG-TAAATAACAGAACTAAGCCTGTGATTCTAGCTT-GTTGTTAGTGCAAAGTCGTTGCCTTTAACCACTGAC--------------TTGGGCTAATACACTGGTTGAATTA-------------------------------TTTCTTAGGGAGGCACAAGGGGGC----------AGAGTGACTTCATCTGTCCA-AAGAAACAAGGTAGAGAGGACCTCAGCTCAGCATCTGAATTTCAGAGAAAATGTAA-AGGGAAGTGCAAGG---GAGGCAGAAGCAGAAGGTCCTCTTGTAAAGAAT------------GAAGGGACATTATCCTCTATGA--------------CATGCTTAACAAT-------ATAGGTAATAGAATAACAAACAGTGT---------TATTATAAAGGAGTACACAAGATA-------GGTGGAG--CATTAATTATAAACTCTGTCATGAGACAATAGGACTACAGTGACAGAA s bosTau2.chr29 2269179 1054 + 45822729 TCCTTGTTAATTCCTTTCTGCCAAGCAGTGCCCTATGGCATCTTTCTGTTGAGAAGCCCATGAGTAGCAACCAGAACTTTGGGGACAGCTTCAAGCCCTGTTCAGTCCCATTTAGCCTACAGGAAAAC----CACCACAGACATGTGGTTAT-CCAGCTACTGCTAATGA----------AGTCTCTTGCTATC----------------------AAAGGTTCTTAGGGACACATGTCAGATTCTTCCAAAAACACATTCGTGCTCAGTCAGTTTAGGTGCCTAGACCTGTCATACAAATTTCTGCAGTTCAGT-AAGTAGCCCCCAGAAATTGAAATGTCCATTTTCTCTCTG-----TAACTTTCAATAGTTATGATCTAATTTCTGGAAGCCTCTCTACTTAGATAGGATTAGGAAAGATGATTACTCCTTTTTCCCCTACAGTAATTTGCTCACTATTTTCTAGTAATAGTTCTGAGTGTATTGCATGTATGTTGGGATCTCAAAAATACTCAACAAAAAGTGTCTTTCTTCTCAGAATGAGCTATGAATCAATTGAAAAATAAGACACAAAAGCAGGAAAGTGAACATTAAAATTAAACCTTTATTTTATGACAGACCTAGGTTGGATGATATAGCTCAAATGTGAAAGCAAAATGGGTCCTCCTAACGCCTAGCACAGAACCCTAAAACCAGGCATGTGTACTAACCTGATCAAGGAGCTCAGAACTGGACTGTAAACATACCCTTCCCTGGAGCAGCAGAAGAGGATGTGTTCTCTGAGAGCGCATTTACCTTTCTAGGAGGAACAAGGT----GGGAACTGGGCTCAGTATCCTGAGTCCAG---TAATGTGATAGCGAAGGGCCAGGAGTGAGGCAACAACTGAGTGTCTTCTTCGAAGGAATCCTCAGAGGAGGAAAGAAGCATTCTGCTTAATGATTAAGTAATTCCTTTGTGCCAAATAATGACAAGAAAAACTAAAACATTAATATACAGTATAGTAAATGGTGGTATAGGAGTTTGCACAAGATATCATGTTAGTGCAGCACATCTATTCTAAACTGGGAGTTAAAATAACAAGGATATAATCACACAA a score=5484 s mm7.chr9_random 8758794 152 + 9745104 CAGGAGGGGTGGGGGGGGTGGGAGGGTGGGGGGTGTCTTCCCCTGT-GTGG-GAGGGCCTGGCGAAATTCCCTCTTC-CGCTCCAGCCCGACTGACCCAGCCCTTAGAGCCAATCCTTATATCAAAGTTACGAAGTTAAGGATCCAGCTTGCAga s bosTau2.scaffold92926 50 141 - 461 cgggggcggccccgggcgtggggggggcggcggcgcctcgtccagccgcggcgcgcgcccagc------cccgcTTCGCGCCCCAGCCCGACCGACCCAGCCCTTAGAGCCAATCCTTATCCCGAAGTTAC--------GGATCCGGCTTGCCGA a score=9176 s mm7.chr9_random 8760039 464 + 9745104 ACAAGTGCCTTGAAACAGAATACAGATCATATCCCTCTTAATAAAACAAACTACTTCATTTAGTTTGCTTGCCTTTTTC---TTTTTTCCTGCCCATTTG-TTTTATGGTCCAGAGTCTGTTATTT-----TCGTTTCTTGCTTGTGGC-TCTATTTATGCATGGCTTTTCTTCCCACATAACTCATGCTGCTTTTACTTTAAAGACTCTCTGCT-----------TTTCTTTTAACTTCACCTCATGTGTTGTATAGAGTTATCTCTTTAGACTCTGAATGAGGTCTTATGATTTAGCCAGCCAGAGT--AGTTAATGGTA--TCTTCTTGTCAGAGCTGTCAGTCACAAGAGGGCATTTCATAGCCACACATG----TCTAAATCACTGCCTTTTGGTCAGATGTCTGTGTTCCACAGTTAAA----------GAAAACCAGAG-----ATCTTTTCAGAAGGAAAGTTCCAGATTTGTACTGTTCCCCTATTCAACAATTTCAAA s bosTau2.chr29 2272632 493 + 45822729 ACTGGTGCCTTAGAA-GGAAGAGAGATCATTTCCTTCTCAGGAAAATGCATTACATCCCTAACTTAACATGTCCTTCTCTGATTTTTTTCTATTCATGTGTTTTTCCTATTCAGCTTTTGATATTTCTTTCTCTCTTTCTCCCTTTGTCGTCTTCTTACCCATGTTTTCTGTTCCCTTGTAAATCTTATTGCTGCATTCTTAAAGACTCTCCATTAAAAAAAAATCTTTTTTTT---------TTTTGTACTTTTTGAAAGTCTCACATCAGGCCCTATAGAACGG-TTGTAATTTAGTCAGCCAGAGTGCAGTTTAAGATACCTCTTTTTGTCAGAGTTCTCATGCTAAA----TCAATTCATAGTTGTGAATGTGCCTCTAGATTGCTGCCTTTAGGTCAGATGATGTAATCTCACAGTAAAAACACAAAATGAAACAACAAAAAACTTATCTCTTTGGAAGGAGTGGCCCAGAAAGGTATTGTTTTATAAATCGAAAATTTCCAA a score=15576 s mm7.chr9_random 8761901 605 + 9745104 TGCAAACAATTATAA--TAAAAGGCAGAATTGAGGGCTATACATTTTTAAGATAACA-ATGAGTTTCTGTAAAGAAAACATTATA-----TTTTTCTTAATTTAATTAACGGCAACCTG--AACAATTATATAA-------GAAAATGCATGAATATTCAAACACACACACACACACCAATCCTACATATTTTTAGTTATGTACA-------TGCTCAAG--------------TTTAGCTTGGTTCTAAGAATCTGTTATTTGAAGATTAAACTGGGCTGGTGGGGAATTGTTTCATA---CTGTG-CTTAGCTTCTTTTCTAGTATATTATGGAAACAAACTTCATTTGGATATGACACTGTGAAATAGAAGGTATTGTACCTCATCACAATCAAATTAGTATCAGATCATTTACTGCTGACACTCTTATTTTTTCTGCGACCATCAGTCAAGTCAAGTTTCCCTGATGCTTGCTCATGCCTTAACAATTTATATTTC-CAGTTGTGGTTTTATGACTGTGAAATACAACCCCCAAAGCCTA--------GATCTTGAAGCT--AAGTGAGAGATGAACAATCACTTAGATCTG-TGCAAAGGCTATATTATTTTGT----GAGAGAAAATCATGCATGCATGCAGCTTTGAAGCATGAAG s bosTau2.chr29 2274023 653 + 45822729 TGAATAGAATTAGAAGTTTGAAAATAGGATGGCGGACTACAAATTTTACAGACAATGTGGGAGTTTCAGTAAAGAAAACAGCATAAAATTGCTTTACTAATTTTACTAATTGTACTTTGCCAACAATTGTGTACCTATGTTGAAAATGTATGAATATC--AACGCAAAAAAAGAAA--AATTCTGCAAGTCTTCATTGTAGGACACAATGGCTATTCAAACCTTCTGAGACTTCTTGGATTTCAGTTTAACAAGGTGATATTCAAAGAGTAAGTTCTTCATACAGAAAATCCCTTCACAAGGCTAGGTCTTAGCTTGATTTCCAGTTCATTATGGAATGGCTCCTTATTTAGAGGTTACATGGTGATATGGGAGGTGTTGCATCTAATCATGATCAAATAATCATCAGCTCATTCACTGTCAATAATTTCA-TTTTTCTGCCATTATC-----AATCAAGTTTCTCTGGGGTCTGCTCATACTTTAATAATTCATATTTTACAGTTGTTACTTTATGGCTATGAAATAAAATCCCCAGATTCTAGGACCATGGATCTCAAAGTTTCAAGTGGGGTATACAAAATTGCTCACATTTGTTGTTAGGTCTACATTATTTTGCTTAAAAAAAAAAATCACACATGCAAACATTTTTATAAATTGGAG a score=7012 s mm7.chr9_random 9199098 418 + 9745104 ATAGGGCTACACAAGAT----AAGAAAAA--TGTTGAGATAAAGAAATGAATA--TGTTTTTTTCAGTTCTGTTCAAACTTTGTAAATAGTTGTTTAGCAAGAAGGAGATAC-CAATCAGATATAAACTAACCAAGTGGCCTGTTCAGGATAGTCAGGGTGGTTGGTTCACAGAAGAGAAGCCAGTATTGGGCTATTAATCAAGTAAATGAATGATGGCCTGTTGAAGTTCACACGAAGTGAA-GAAAACATAAGCTCTGCTA---ACATCTGCTCTT---CACAGCCTTGTTCGTATA---------------------------GTTTTTCCAGTCTAAATTAAGGGTCTGAAATCCCAGCTTTTCTATAAATCTCATTATCCAGGAACTAAGCAACTTGGTGAAAAATCTCACCTTTAACTTCACACTTGTAACACTCACTA-AATTTACGTGCACTTT s bosTau2.scaffold6401 600 442 - 45854 ATAGTATAAAGCAAGATCATCAAGAAAAAATTATTTAAATTAATGAGTGAATAAATATGTCATTTACCTCTATTTGGGTTTTGTAAATAATTGTTCAGTAGGCAGGAAAGATGTAATTGAATGTCAATGAATCCAGTTGTGTGTGCAAGCTACTTAGAGTGCCTGATCTATCTCGGGCA---CAGTG-TGAATGATTTTTCTGGTAA-------------TGCTCACATTCTCATGAATTGAAGGAAAATTTAACTTCTGCTAAAGACTTTTGACCTTTTATCCAATCATTTTCATCTACATTTATAAAATTCCAAATCGAACAAGGCTTTCCTAATACAGATTAACAGCCTGACATTCAAGCTTCTCTCCAAATCCCATTATAT-TGATTCAAGAAACTGTGCAAAAAGT-TCACTTTTAGATCCATACCTTT-ATATTTGCTGCAATTTATTTACACttt a score=14616 s mm7.chr9_random 9199521 569 + 9745104 TGGGTGTATGGTGGAGTTTTGACAATGTGTGAGCTACTATAAGTCAACCAGCCTCTTTTAAAGTGCTTTATGTTGTGTAGTCATAAAGTCTGGGTTGTTTTGAAGTGTTAAGACAGGCTGACTTAAAGAGAACA-TTTTTTATTCTGATGTGAATGAGAAGACAGAACTCTCAATTTCATTCCAGAAGTaaaaaaaaaaaaaaaaaaaaTGAGTAAAAGTCTACTAATGCACCCTGCTTCCAG------TGCAGT-----GACCCAGCCAAGAAGGGCATTAAGAGTCCAGAGATAAAAAGCAGTCTCTTGGCAGAATGGGTCAGGGAAATTAATCTACAGGGAATAGACTGCAGTTAA-ACCCAATTTCTCATACCATGCCTCATTTTTCTCCCATAGTTCACTGTTTATAGAAAAGTGCCCTGAGCAGATTTTTCCCCATTGTCTTC-CAGGAGTTAGTGTTGTTAATAGACAATAGAATGGATAGGCTGGAGTGC--TATGTAGCCACCAACACATAAACTGTGTTAAGAGTCCACTTGTTCC-AAACCTCACCATATGAATTAGCACCTCCATTGTTTCAAA s bosTau2.scaffold6401 1490 522 - 45854 TGGGCGTTTGGGTGAATCATGACAATGGATAAGCTGTTG---GTCATACAACTTCCTTGGAAATGTTTTCTCTTATGCAGTAGTAAAGTCTGCCCTATTTTGAAGTGTTAAGACATGTTGACTT----AGAACACTTCTTTTTTCTGGTATGAAT--GGATATAGACTTTTCCATTTTGTTCCAG--------------------AAAATGAGTAAAAGTCTACTAATGTGTCTTCACTTCAGGAAGATTGCAATTTCAGGACCTAGCCAAGAGGGCAATTAAGATTCCAGAGATAAAAAGTAT--------------------------TTAATCTGCAGAAGATAG---GTGATTGATGTCCTAGTTCTGATACTGTATTTCATTGTCCATTAAT-GCTTACTTTCTACAGAGAATTGCTGTTATCAAGCTTTT--CAGTTATTTTCTCAGAAG--AGTATTACTTACATACACTATCAGGGGGTAGGAAGAGTTCATTGTACAGCTACTAACATATAAAATGT-TACTTAGTCCACTGGTTCCAAAATCTGGTCATATGAAGTACCACCTAAGCTGTTGtaaa a score=31838 s mm7.chr9_random 9200567 1549 + 9745104 CTTGAGTGATGTGTGATCAGTAGGAATAGCAGAAGATTTGGTGTCTACTT-AGGTTTTATTCCTCTTTAATAGAAATTCACTAGGAAATGAAAGCCTCAGAATCATAGATTCTTTCCCTGTGACCACGTACAAGAACCATCTC-------CTATTTCCAACAGGA--ATGCAGAATATAGAA--GTGATATGAGGTACCTATTTTTGTTCAGATGGCATA---CATTTAGAACTATGTGAGTTATGATGCTGGACTGTGGGGCAGTACTACAGATGAGAAGAACATTGA-ACAGCTATTTGAGTCTAAACATCTGATTTATGCCTAACATAGAGATTC-ATGTTAAACCCAAACAATGTCCACTAAGTAGTGCCAAAGAGTTGCTCAGATCACATGAATGCTGACACAGCTTCTTATAGAGACAGCAAACGCATGCCCATGACCAATGACACAAAGTTC--GCTGAAGATCA-GGCAGCA--TGTACTGATTTCAGGAGTTAATTTCAGTGGTTGGCCTGTTCATCTTCTTCAATAAAATGTAAGACTCTCAAAAAC-AAGTATACATAT--------TTTTGGAAAATATGTTTCCCACCTGGAATTGAATAGCTAACTACAATTATTTTTTAAGTAGAATAATCACTTACTGACATTTGTGCTATCTCAAAGTTGAAATAATAATAG-TTAGGGGTGGTTTAAACACCAGATTTCTC-AAGTTTCTGGTAATTGAAGACTATGTAGCTGTAAATTTTATATCATGATCTAAAACAGATTGGAAGACCCTATAATTTTCCATATA--GTCATTTA-TTATTTCCACAGACATTCCATCCTTCTTAGACTCCAAATACCTTAAAATTTGTAACATGCCATAGTTTTGCAATGAAATATTTACAGGAAGGTTATTTCAAAA--TTATCTGTTGTCTGGAGAAAA--ATAAGACAATTTTTTTAAACAACATAGTTGTGATGATGAGA-----TTGcttttgattatacgtgaataaaaattcaaaccaagctggcttgacccaaaatagaatttattgcctcacttaacc---aagtttaggaataa----agctttggtcaaatagaatttaaatgaccaagttcaaccgatatcatcaggacatggtttgctttcataacctggggtctgactctgccttgttgcagagaatcatactccattct-cagacaaggatgacctcatggtaggaaactggctgccaCACTGCAAGTGCTTCCCACTGCTAGGTTCCCACCATGCAAGAAAGAGCATCCGTTTCGCTCTAAGTCTAAACAAGACACTCAGACTGAGGTCTTAGGCTTCTATTGATCCCCATAGATGCTACATT-----ATATT------------------GGACCAATGTAC-------------------------------AAAATGTGAGATATCT--GGACTTGGAGAGAACTC----------AGGCACATGCTCTGACAAAAGTGGAGGCATAGCTCTTCCACAGAGGAAAAGGAAGTATCATTATGTCTCTCAACTTGACGCTCTTCTGGG---CGAGTAACACGAAAGAAAAGAACTTATTTAATTCGTGTCAGTATGTCAGTAGCA---CATAAAACAATCGCTGGGATATAGCAGACATTCAATA s bosTau2.scaffold6401 5136 1590 - 45854 CTTAGGTGATACATTAACAATTGGGCT-GAGGAAGCCTGGGTGATTATTTTAGATTTTCTTTCTCTCT--CAGGTCTTCACCAGGGAAAAAGAACTCTACAGTGATATTCTTCTGTTGTATGGCCA---ATTGGTACCTTCTTTTTCTAACTACTCCCAAAGGGAGTATACAAAATACAAAATAGTGGAGTTGAAATCCTGTGGTTGTTCAAAAAAAACATAACATGTAAGACTGTGTAAGTTATAATT---GCCTGGGAGGAAA-ATTCTGGGTTAGGCAGACATCACTGTATTTATTCATGTCTGAGAGTCTGATT-ATGTCTCATACAGCATTTCCAAGCTGATTCTGAATGATGACCA-TGTACAGTACCAAA-AGTTCCTCAAAATACCCAATCAGTGTCATCATTGCTTCCAGATG----AAAGATGTTCCTGTGAACAATGCTGAAAACTTAAAGGCAAAGATCAAGGCAACACATGCACTGATTTTGG----TGCATTTAGTGGTTTATGTGCTCACCTTCTCCACTGAAATGGTAGATTTTCAACAATGaaatttttatatgaatttaatttttaaaaatatttt----aCCTAAAGATAAAAAGTGAACTTTCATCATTTTTCAA-CAAACTAATTACTCAGTAACATCT-TGCTATCTCAAGA--GATATGAAAGTAGGTTTATAAAGGCCTAAATACCAGAATTCTCTGAGTTTCTGTTAATTGAACAC---ACAGCTGTGAACTTTATACCATAATTTAAAACAGGCTGGAAGATACTATAACTTTACATAGATTATCATTTAAGTATTTCTA-----ACGCCAGCCTT---AGATTTCAAATGCTTTGAATTTTGCAATACACCACAGTTTTGCAATAAAATGTTCAGAGACAAGTAATTAAAAAAATTTTTTTTCTGTCTGAGGAAAAGGATGGGACATTTTTTT---AGAGCTGAGTTGTAATTGTTTGATTTTTTTtttttttattacaagtgagtgaaaatccaaaccaaactggtttggattaaaatagaatttattgcctcacctaacccaaaagttcaagaataaatctagttttggtc----agagct----tgaccagactcaaatgatatcatcaggggatggtttttctctgcagttca-----tggctctgcctt----------------cTACTTACTGTAGACAAGGTTGACTCCATGGTTGGAAGTTGGCAGCCATGGCTCTGGTTCTTCACACTTCCAGGGTCTCACCATGTAGGGGAGAGGGTCTGCTTCTCTGAGAGCTGAAGCAAAAAGCTGAG--------CTGCAGCTATGATTGGCTGCCGTGGATCCTACATCCTCGGATATTCACTATTGTCAGAGAAGGGGAGGAAGGCACTCTCCATGCCTCCCATGCTCTGGGTTTAATTCAAATACACCATTTCTGGGGGCTGGGGGAGGATTCGTTTTACCTGAGGCAAATGGTCTAA-AAAGGCAGAGGGGTGGTTCTGCCAGAGC-AAAAAGGAGGTGCCATTGTTGCTTTTGCTTTGATGccccggtagattttaagttgcat-atggtaaggaccttatcaacttttgctcactattttattaacagcccacagcacagtgtctgtg-cacagtgggaattcaata a score=6167 s mm7.chr9_random 9204286 346 + 9745104 AGAAAACATTCTAAAAAT-GGCTTTTGCTCACAAATGTAAGAGATCCTGCTTTTACCATTTGAGTTCAAATGACACCTTATCCAGGATTCATGTTTTCATACAATAGTCTCTAGTAGAGTGCCTTTGCTTACAGGCATTCAAAGCATACTCACTTAATTTGAAAATTTTAGATCTTTGTCTCGAGCTTGTGAAATATCTTTAATTT---CGGGAAACGGTTTGTGCTTCTGGAAACATGAAATAATTGAAAACAGA--------------TTAGTTTCATAAGCATAACAACAACGTCAGAAGCACGGCAGCTGTGATCTCTTACTGATATGGCTGT----GGCTATGGTTTGCTTCATGGGCATAAG s bosTau2.scaffold6401 9086 354 - 45854 AAAAATCATGTTGCACATAGGCCCCTGCCCACAAATACAGG-TACTTTGCTTTTAATAAACATGTTAAAATACTATCTTA--AATGACCAGCAGGCTCCTGCAGTATCCTGTGG--GGATATTTCTACTCACATGTACAAAAAGCATGCTAATTCAATTGGCCATTTTCAGCTTTGTGCCCCGGGCTT-------CCCTTTGGTTTAGATGAAGAGCACTTTGTTTTTCTTGAAACATAAAATAATTTAAAACAGATTTTTGAGCGTAGGTTAGCTCCTTAAACAGTACAGC--CTGAGGAAGCAGAACTTTGCTGCCCTCTGACTGATGACGCTGCTGTAGGTTATGCTGTGCCTTATGGAGACAGG a score=40448 s mm7.chr9_random 9208855 2071 + 9745104 cctgttttccacaaaagaacaccagagaacttcaataagtt-------aataaaattttaagaaagtg--tccggatacaaagatccacgtacaataatcagtaacttt--------------------tctatataccaacaac----------aagcattct---------------gagaaagttgtaaaaacactcccattcacagtagcctaaacaattaaaatTAAAATTCCCCTTTTATAATGTCCA----GTGTATTTTT--TATAAT-AATGATTCCA-------GAACTGAAACCACATACTAATTTTTGTTCCTTTAAAAATATGGATAATTCTATGGCCTTCAGTAAAATCATATTATGTCAAAGGACAGTTAGGTAAGTACATATACTTATTGTTTATGTGTGAATCTCATATCAGGGATTTTCCCTATGCTAAGTGCTCATCAAACA-----ATGTTGTCTCATGATTC-----------------TCCCCACCCCTTGGCTTTAAGCATATGCACAAGTTAGACTGGGATATGTTCATATGGATAGGT---AACCCTTATTCTTAGGTATTAAAGACAGGTCAC--GTATATTATCAATGCATAATCTCA---------------TAATTTGTGCAATTGGCACATGCTATACTGTG--ATTCTAAATAATTCAACTTCTTTAAATGCTTGACACACAGGGATTGATGAAAAGTCACTCGTTTTCATTGTTTTGTAAGTGCCCTTACGTAGtaa---aaatattattttaaaaaaGACAGTCCAAATGTGGT-----CTGATGAGGTTGACACATCCATATGAAACATTCTTACTAGAATGTCATTTCAAATG------CTTG----------------------------------------GCACTAACCTGGTGGTCAACAAATAGTATTTAGCAA-------TGAACTATTGA-----TCAGCC-GTTTCATTTC-CATGAAAATGTTTTGGTCATAAAACACCAAAAATTTACCGAGACTTCTAGAAAGATGACATTTTTCTTCTCTACCTCAAAGCATG------------ACCTTTGAGCAACTAAAAATTCTCTC------CCTCTTCTTTGCATAAAATTACCTAAAATATCTACTGGTAATAGATCATTTTCTGTTAC-----AAATTTTTAATATCCAA-------GTGATTAAATGCAGACTGTGTAGAGGGAGGCTGTTCTTTG----AATCATGT-TTCATGAATGAGG--AGGACTGCGTGGTCCTCATTACATCCTAAGGCTTCCTGTGAAGTGCTAGGATTTCTGCTTGAAGAGAAAAAAGGGCATATGCACAAGATGTTTCCAAATGTA-TTTCCACTGTGACATGAAGAAAAATAATTGGAAACAAAGTTGTACTCATTCCTTCGGAGGTAGTTCACTTTT--AGTTGTGAAATATGTTTTTTTAAGTAAAAATATCCCCAAATATGAAGGAACAATATAACCAATGCCAAATATTACAGGACATATAAATACTTGAGTAAGTCCTTATGAGAAGAAGAAACATTTTCATGTCCTCAGCTTTTCGGAACAGAAAGAGTGTTGACTCTGGCACAGAGCACAAACCACCTATGTATCGTTTTTCATGAGCTCCCAAAAGAAGAAACCAAGAGCAAAAATGTATACTGAAATTCCCTGTTGAGAAGAT-GGAAAAAGAGATGAAATTCAACAATAACAGAAATATTAAGTCTGCATGGTTAATAATTCTTGATTATGTGAACCAAGAAGCCCGAATTATGAATACGTGGTTATATTCTCTCCTTGTCTTTCATTCAGTGTTTATTTTTAATAGCACCAGGGAACTTGTTTTGGATTTTATCCTCGTGATTGACAGTGGGGATTTGCTTAAGGTCAGCTCT-GCTAAATGAAAA---------------------CTTTTATCTGCAGGCTTAGATTCTTTGAATTTAGATCAAGAGAGAAGAAG-AAAATTTTGAGGATAAATTCAATGAGTCCTATGATTTTCATTAATGCAacacatacacccatacctacacacacacacacacacacacacacacacacacacacTCCAAGTTTTAACTCCAAGGCCACATTCTAA--AGAAAAAATGCAGTACAGTTATGGTGTTATAACAAATGGCAAATTTTTATCTTTAGAATAAAACAATAAGA------CTATATTTTTATCTCAATATGTCACATTTAATAAAGCCCT----ACAAACTACTTACTACTAAATGA-AGTATCTCATT--TTCTAGAGCATATATATtt s bosTau2.scaffold6401 10857 2182 - 45854 CCAGTTTTCATCAAAAGAACACCAGAGATGGTCGACATTTTTTGTCCAAAATAAATTTTATTAGGGTAGATCT---TGCCAGGACTTTTAAAAAATAATTAATTCTTTTCTTTAATATTCTTCAAGATGTTTATATAGCACTGACTGAACGAAAAATACATGCTTTATTCCTTAAAAGAGCAAAATACATAAAAGTACACCAATTTA-ATTAG-------AGCAGAAATGGAAATTCTCCTTACACAGCATTCATTTAATGTATTTTTGCCAGAATGAAGGAGTCCATGGCACGGAGCCCAGGCCACAGGCTAATGGTGGCCTTTGTATGGATCTGTA-AGTACTGTGGCCTTAAA-AATGCTACATTAAGACAAAAGAGGTTTAAATACTAGCAAATATTTAATGTTTATACTTTA----TATATCA---ATATT------ACTAGGTAACCAGAAAACATCCGAGTTTTGCCTCGTGTCTCAGGTACATCCCAAATATTCCCTATTTCCTGACTTCAAGGGTGT----CAGT--GGCCATGGTATCTTCCCACGGGCAGGGTTGGACCAGTGTGGATGGCTAATACA---AGCTCCCTTGCCTGTGAGCAATATGTGAGCCAAAGAAGAACAACAATCCAATTTGTGCAAATTCCATACGCCCTGTTGTAGAATTCTGAGTAATCTGTCCTTTTCAGATGCTTGAGTAATAGATATTAAAGATCA-TTACCTATTTCCAGTACCTTGTACATGTT-GTAAATAGGAATGCAAGTGTTTTTTTAA---------TCTAAACTTGATACACCCTGATCCTGCAGAGTGGTGTATGTTAATGTTTCCTGTGAGGGCACCAGGTCAAATTTTCTGTCTTGTTTTACCAATACGCACATTTCTGTTTTTGTTATGTCATGTGTACTAATTTG-CATTCAAAAAATATAGTGTAACCAAAAAGGGGGAATTATTGAATGTCTTAGCTTATTTTATTTTGTACGGAAAT-TATTGATCATATAGCCTGTTAAA---ATAGTAACCTGTAGAAGCGC-----------TGTGTACTTTAAAGCATACCTCTATTTTATGCCTCTGAGCACCTAAGATTTTCTTCAGTCCACTTATTTTTTAACAAAAATTCTCTGAAATGTCTGATTGTAATAGCTGATTTCTTCTCGCCCCTCAAATCTTAAGT--CCAAACTTACAGTGAACCAATGT----TTTGTGTATGAAGAATGTTCTCTGTTTAAATTGGGTCTTCATCAGTCAGTGCAAGATTAAACAGTTCTAAAAATACCATA---TTCCCCTTGAACTACTAGAATTTCCACTAGAGGA--AAATAGGGCATTTGCATGAAATATATTTAAATGCAACTTCCACAGTACTGTGAAGAAAAATAATTGGAAATAAAGTTGTATTTATTTTTTTATAGGTAGTTTGCCTTTCTGGTTGTGAAGCATGTTATTCTAAATGAAAGTATCCAAAAATACGAAGGAATAATATTACTGATGCCAACTATTACAGGATATATAAATACTTGAGTAAATCCTTATGAGAAGGAAAAACGCTTTCAAATCCTCAGCTTTTCGGAACAGAAAGAATGTTGATTCTGGCACTGAGTGTAAACCACCTATGTATCACTTTTCATGAGCTACTAAAGATGAAACCAAAGGGCAAAAATGTATACTGAAATTCCCTGTTGAGAAGATGGGGAAAAAAGAAGAAACCCCCAAATAATGGAAACATT--GTCTGCATGTTTAATAATTCCAGACTATGCCAGCCAAGAAAAGAGAATTAGAAATACTCAATCACATTCACTTCTTACATTTCATTTATTGTCTGTTTTGAAAAACACTTGGCAGCTGGGCCTACATTTTATCCATGTGATTGACAGTATGAATTTGCCTGAGGGCAGCTTGAGTGAAATGAAAAAATAAACAAAAAACATTTTCTTTTTTTTCTGAAGACTTTTTTCCTTGTACCATATCACTAGAGAGAAGAGGAAAAAGATTAATGGCAAATCTCA------CTGTGCTTGTTCTTG----AATACATATCCT---------------------------------------------------TTTCAACTGCAAAGCCAGATTGCAACCAGCATAAA------------ACGTTGTTAGTACAAATGACTGATTTTGTTTTTTTTAATAAAAAATTAGAAGGTTTTTCATATATTTATCTTTAGATATTGTATTTGCTTGACTCCTGTTAACGTACTGCTTGTTTCTAAGAAATATTGTCTCATTCCTTGTAGAAGATAAGTGTTT a score=2525 s mm7.chr9_random 9213126 126 + 9745104 agcagtttctgcatctatgacacagagaataGTTCTTAAAGAAATGACGTTTTCAAATGAAAGGCAGAAGAAATCATTTTAAATG-AATATAA----ACTTGTGTAAAAATTGGATGACTGATAAAAATAA s bosTau2.scaffold6401 13428 130 - 45854 AATAGTTTTTGATATTATGAAATAATGTCTTTTCCCTAAAATGATTCTTATGTCAAGCAGAAAGCAGAATAAATTATTTTAAATGTAGTATGAAGCTAATTATATACAAAATACAC-ACAAATAAAGACAA a score=10747 s mm7.chr9_random 9213357 486 + 9745104 TACCTAATTTTTTTCTCTGGTTAGAATCA-ACCTTAGACTTTCAGTCTCCATCAGTAATGTCAAGTTGAATC--TGTCAACCAGGAATTTTAATTCCCAAATATTTCTCATATCTTACTCTTCCCATCTCCTCTCTTGCTCTCAGTACCTTAAATCAGGCTCCTTCAATCTCATGTCTGGGCAGTA---CAGCTTCCCACCTTGTCTCTTT----CTAGTTCTGTCCTCCTTACACTGCATTCCATCATG-----GTCTAGGAATTTATTTCAGGTGGAGG---AATGAGCCACATCACTTTCTTTTAATGGTTCATTGTTGTCTATAACACCAAGTTCCTTAGAGTGGCACAGAATAATCCCACTGTGAC-CAACCCTGGCCATTCTCCTCAGCCTTCTCTTACCCTTTCTAT-CTTTGCTATATACTATATT----TTCCTACATCATGGGTTTGTGCATACTACAT-TTATGCCAAATATGTTCTG-----AACTTA-TTCCTACTGAAACTTA s bosTau2.scaffold6401 13958 512 - 45854 TATCTGACTTGTTT-TCCAGTCAAAAACACGCCCTAGAATTTTTTTCTCCCTCAATCATGTTAAACCCCATCACTCCCTCCCAGTAACTTTACTTTCTACATATTTCTGCGGTCTTGTTCTTTCCCTCTCAATCTCTGCTGTCACTTTACTAGATCTTGCTCTCACCATGTCTGGTCTGTGTTGTGAACCAGCCTCCTATCTTGTCTCCCTACCTCTAGTCTTGGGTCCTTTAGAAAGGATTCTCTTAATATAATGTAAAAAAAATTATTTCAGATGAAGATACAATGACCTA----ACTCTTCTTAGGTGGTGTTCTGTTGCCTATGGAATCAAGTCCTTTAGTGCAGCATAAAATAATCTTCCTATGACTCTGCCCTGACCTCCCTCCTCAACCCCATCTTTCTCTCCCCATATTTTACTGTGTACATTATGCAAATTCATTCTTTAAGGGTTTACTCAGGCTATGTCTCCTGTTTAAAATGCCCTGTATAAAACtcactccctactatgacata a score=22746 s mm7.chr9_random 9213919 887 + 9745104 TTCTTAGTTGGACCACACTATACAATATTGAATATATTTACTCAAGATTTGGGATATTTTCATTGTACTCTAAGACTTTGGAGGACAGAGATGGTGAACAAAACATTCTGCATTCCTTTCAGTATGTGGAATAGGTATGTAGAATATATTAGTCAGTGAATAAATGCCTATTGATTCAAGCTGAACTTAAACTTACTCATAAAATTAAATTTAGCTTCAGTAGCTATATTTATATGTAAATAATATAGCTTTCTTCTATAGAAAGATAATGTTTATGG---TTGAAAGTCATTTAATTAGATGCTGAACACTGGAACTGCTCAAGGCTGTTACCTATGTGATG-------TGAGAT---GAAAATCTCGTCA----TCTGCTGCTGCTATCTTTTAGCCTATCCTAGAGAGTTTGAATATTGAAGTTTCTGAGAAACACAAAGACAAAGAAAATGTATTTTTC---AAAGCTTCAGAG------AGCAGACAAC--------------------------------------------TTGATCTTATATGGCTTCCTGTGGCTTGGAAACTGGCTCCAGAGGCATCGTATTTTTCCTAACACTTACCTAAGAGGACATACCTAAGGTTTGGAAGTCAGTTGAGAACATCCATTTCTGAGAAATTTCCTGTCTTTTGTGGTTCTGGTCAAGATGGTC-AAAGCACTGTGCTGTGAGTCCTCTTGGTCTGGGCCCAGGTTTAGCACAGGAAGATC-CCTAAGATCCACGTTT-GGCGCTGATTAACCACAGACTCGGGGAAAAGCAAATAAACTCTTAGGTTTCAATTTCCTTCCCTGTTACCCACTGGCATCAATCCTACTCCA-GAAGATCAACAACTCCACTCCTCATCATGT-------GGACCACTGTTTTCACTGCCCA---CTATCTCAGGAACTTCCTGCCAGC------------ACAACTCTGCCTTTCAGTAT s bosTau2.scaffold6401 15213 938 - 45854 TTCTCAGTTAGCCTGTACCTTATTATACTGATTTAATATACTTA-Gatatttgcttcttccactatactataaacttttgaagagcagaagctgtgaataattcgtaattcctttactctcgtgcttagtatgggtctggaag----------cactcagtaaacatctgaggaaagaaactgaaCTTTCAGTCACT--TAAAATTAGGTTTAAATTCA-------------------------ACAGCTTGCTC----AGAAAAGTAATGCTCAAGGATATTAAGAACAAGTCAAATTAATGTTGCATACTGCAAGGGAT-AGTGTTGTTGTTAACTTGGTACAATTACTAAAATTGCAAAGAACTAGTTAATCTTTTGATGTCTTTGCCTTTTATTCTACCCTAGAAAAATTAGGTATTGACATTTCAAAGAGATGTGAGTGTGAAGGAC-TGTGTTCTTCTTTAAAGCTGCAGAATGAAACAGTAGGCAACAATAATATTTCACAAATGAAGTGGGCACAAAGTCAAACATTGTCTCAGTTCTATGTAGTTTC-TGTGGCTTGGAAACTTCTTTTACAGGCATCGTATTTTTCCTAACACTTACCTAAGAGGACATACCTAAGGTTTGGAAATCAGTAGAGAACATCCATTCCTGAGGCATTTCCAGTACTTTGTGGTTCTGGTCAAGATGGTCAAAAGCAGTGTGCCGTATATTCTGTTGGTCTGGTACCAGGATTAGCAAAAGAAGATCTCCCAAGATCCAGGCTCAGATTCCAATTAACCACAGGCTCTAGGCAACACCCATGAGTGTTAGGGCTTCAGCTTCCATCTCTGTGACATGTCAGAATCAATTCTGCTCTGTGAAGAAGAGGTCTGCTATCTCACATAGCGTGTCTGCCGGCCCACTGCTTTCCCTGACCAGTTCAGTCTCAGAAACTAACTTGCAGAAGTATGGATCAGAAAGCTCTATCTTTCTGCAT a score=15761 s mm7.chr9_random 9215719 611 + 9745104 GTTTGAACAAGAGGTTATCTAGTCCCTGCTACGTGTCTGCACTGTGAAAACCATTAAGACT-GTGACTTTGCTTCTTCATCTTTTCAA--AATACTCTTATAGCTCAGCTTTTTCCTTTCCACATAAGCCAAATATTGGATGCCTGTTGATTCTATATATTATTTTAATACATGATTATATTCAAGATTAACAATTGGAGAAGTGTCTTTGAAAGG-GCTGAAAGTATTTGGAAATTCTTCAGAGAATTAGGTTA-AATATAATAATTTCCTCTTGGACTAAAACTATTTTGCTCCATGATCAAATCTTATTTTTCAGAATTAAACATATAACAAGAATATTCAAGAAACATATAAC-TGCTATAA---TATCTGAGatttaaaaatgttaaatgaaattatcattatatttaaaaattCATTTAG------------TACCATGTGAGAAAAATATT--CAA--------TATGGAAAAACATTAAATATGGAAAATGTTGAATGA---CAATTAAT-ACATGTTGCCTATAGAGAAATAT---TAAATACAAAAAACTGAGTTTGGATAACATGCTCCACTATAGTAGATCAAATATCCATGTCAAGTTTGAGAGAATTTTGGTAAGAAAAGAGTATGATTAGCTAA s bosTau2.scaffold6401 16322 636 - 45854 GTTTCACCTGAATTTTACCTAGCCCCTGCT----GTCTATACGATAAAAGTTATCAGGGCTTGTAACTTCACTTCTTTTACCTTCTGAGGAACAATTTGATGGCTT-TTATTCTCCTTTTCTCATAAGCCAAATACTAGACATCTGTTACTCACACATATTATTTAAATATACAATGGCATCCAATGTTAACAGCTGGAGAAGTGTCTCTGAAAGGTAATGAAAGCATTTGGATACTCTTCAAAGAATTAGGTAAGAACATAACAATTAACTCTTGGCCCCAAACTCCAGGACTTAATGA-------ATATTTATCAGAAGTAAGAATCTAACAAAAATGGCTTAAATGCATTTAACTTGCTGTAATATTATCTGGGG-TTAAGAGAATCAAATGAAGCTTTCATTATATTTTAAAGTAAGTATAAATGGTATGTGATTATAAAATGAGGAAAATATTGCCAATGATTATCTGTGAGGAAAGTACTAACCTGGAAAATATTTGGTGGTTCTAATCAGTCATGCATAACTTATGGAGAAAGACATAGAAGAGGAAGAAATTTATTTTAAATAGCAAAATCCAGTTCCATGGATTGATTACCACTGTTATATACTGGGGAGTTCCAATAAGTGTTTAATATAATTAGATAA a score=38410 s mm7.chr9_random 9218994 1429 + 9745104 ACTTTACTTTTGTATA---ATATTT-CTTTTTGTATAATCTGTT---------ACATATTCTTCTTTTGATTTATTCTAAATCACTGACAGAATATGAAATCAACCAGTTGAGCTCATTGACCATATAGACGTATGAAACAGGCTCTATCTGTCCTACCAGCCAAGGGCTGTCAACCCTGCCTGAGATTGAATGGGTGGCTTTTGGTCTGGATGGAAAAACTCTACTAGAAACCAGCATATTTGCCTGGGGAGAACCCAT--GGCACTTCTCAGTGTCTGTGGTGAGTACAGCCAGGGCTGATCACACCCAGTTTTGTTTTGACTAGTACCCAAGGACTCTGTGGGTACAGGCTAACAGCACACACTGAAAATAAAAAAAAAATACTAAACTCTGAAGACTG----GCTTTTGGGGGTTTCACATTCAAATTAATATCT-TCTTTTCTAAAGATCTAAACATTCAGAGAAATCAAAACTATAACCATCAT----AAATTACAACCCAGTACTTAGAACAACTCTG---GGCATG--------TATGAGCAACCTTTACATGTTAGACAAATTAAACTGAAGAAGGTAGGGGTGTTAGAACTCAAAAGAACCCTTCCAAAAATATGTGTAATCTATTATAAATAAACAAATTCCACCACTTTACAATA---ATCATCATG----AATTAAGCTAAAATGATAATCAGTAA-------AGTAGAAATTCTT---------------TAGCTAAAAAGCCCCA-AAAAGCTGCATTCAAACGAAAAAGCTAA----GAAATTACATATGTGTTACTTAAAAATTCTGCTCTCTGTGTTTTAAATAAGATGTCGTAGAGTTGTTTGGGTTACAAAAAGTTTTCTACTATCATCAGTTAACA---GAAAAGTAACAGCACAAAACCTAGGCCTGGTGGAGTAGACTTGCTTCAGCTTAAGTACAGAAGCCCAGCTTGTTCTTTGCCACTGAATCAAATTAGGAGCAGCTGGTAATTGGGACCAGATGAAGTCTCAAGGGGAGGAGATGTAGGACATTCCAAAGTGAACACTGAACATTTTTCCACAAAGACTAATGTCAATTAGTACGACATAGTATTCACTGCAATTACACATGGCAACTGAACTACCTTGAAAATGAAGCAATTCGGTTGTGGAG-TGGACATAATACCAAATTTGGGGAAGTTTAATAGCCATCAGTGCCTTTATGCATACTTTGTGAT---------GCTTTGATGTGTTCTCTTCTACAAGGGCTTGTATCTCTACACAAAAGAAGGAGCC-TTTGT------CTTTTTTTCCCTTTATTCAGATTAATCCCTCAGTTTCATG-GAAATTAAGTTTGTTTAGTTAATGCAATAAA-CGTTCAGATAAGTGTAAATAGTAATGCTCACTTGCCATTGCTTTCATATATCCCATCC-CCCTGCTTCATCATCCC--TTCTTCCTTTACACAAACAAAGCGTCAGGATGTAAGTTACAGTATTCTCG--ATGTTTATA s bosTau2.scaffold6401 17893 1431 - 45854 actttacttctggacactgatatttgattttcatacaattttcttgagtcatgaaatgttcttttttcaacttgctttcagctattaa-aaaacataaaatcattc---ttagcctgtgtaccatgcaaaaacaggcagcagaccagacttggcctgcaggcT------------------CTTAGAT-GGATGGATGACTTTTTGTCTGGATGGAAAAAGAAGGTGAGGAACCAGAGCTGATGCTTGGGGAGTCTCCATTAGCCACATCTCAGCGCCTGTGGTGAATGCAGCC-GGGAAGATCACACCCAGTTCTCTTTGGACCATCACTCAAGGACACTGTGGGTACAGGGTAGCAGCAAGCATTAAAAA-GAAAAAAATCTTTTGAACTATAAAGACAGTTTTGGTTTTTAGGTCTTCATA-----GTTAATGTCTGTCTTCTCTGAA---------ACTCAGGAAAGTAAGGGCTCTGTCAATCATTTCCCTACTCTAGGCCAGTGCTTATCATGATGTTTTATGGCATGATGCCACATAGCAACAACCCTTATATATTAGGTGATCTGAAACGAATGGATCAG-------AAAGCTCAAAGGGGTCCTGGGAAGGACATATTCAGTCTATTCCAAATGAATCAATTCAGCTACTTTCTGATACAGATTCCGATGTGGAAAACAAAATAAAATAATATAAAGTAAGAGCTGTAGCAGAAACTCTTACTTGTTTATTTAACTAGCTAAAAAGTCACATAACATCTTTGAGTGAACTTGACAGCTAACTAAGAGGTCAAAAATGCATTTCTTGAA---TGCAGTCTATGTATTTTTAATAGAACTTCGTAAAGTTGCTGAGTCTATACACATTTTTCTGTAAACTTTAGCTGATCTATAAAGGACAACAGCACAG----TGAGGCTAATGAAGTGTGCCTGCTTCAGCTGGAGGGCAGACGCTCACCTCATTCTCTGCCACTGAATCAAATCAGGAGCAGATGGTAATTGGGACCAGATGAAGTTTCAAAGGGAAGAGATGTAGGACATTCCAAAGTGCACACTGAACTTTTTTCCACAAAGACTAATGTCAATTAGAAAGACATCGTATTCACTG--------------AACT----TACCTCGAAAGTGAAGCAATTCATTTTTATAGACTGACATCATTCAGTATTTGGGGAAATTTAATAGCAATCAGCAACTTCATAGGTACTTTTTTTTTTTTGGTTGATTTTCATATGATCCATTTTACCAGAA--------TGGATACAAAAGTATAGTCCTTTTGTATTTTGCTTTTATTTTTTTTACTCCAATTAATCTTTTAGTTTCAGGAGAAACTA-----GTTAAGCCAGCAAAATAAAGTGTTCTGAAAAGTGTAAACAATGAAGCTTACTTAAAATT-CTGTTATATATTCTATTTGCCCTGTTATACAATCCCAGCACATTCTTTACACTCa---------aatatttaagttattttatttaagttatatttata a score=3237 s mm7.chr9_random 9271195 164 + 9745104 TTTAATTATGTG---------TTAATTCAGAAA------CAGTTCTCATTGATCATTTCAGCTCTGTTTTCTTATTTTAGCAAAGGTCAACATTTCTAATTTATTGCAACATAAAGTGAGCATAAAGTCAGAAGGGCATCTTATACATACATTTTGTCGAACCAGTGCTACACAATGTT s bosTau2.chr10 34660432 154 - 70001009 TTTGCTTATGTGCTGTTTAAATTAGTTTAAAAAGGATAGCAGCTTTAATTGAT-----------TGTTGTCTTATTGTGGCAAGGATTAAAGTTTCTAAATT-CTGTACCATAAA-TGAACATAGAG--AAAAGTGTG--------AAATATTTTGTAGAAT--ATACTTCATAATATT a score=58714 s mm7.chr9_random 9271627 4241 + 9745104 CATTTTTCTAGAGTTAGTACAGCTTCATGATT-TCAGCAATAT---------------ATATGCTGTATTGCCTTGTTTTCACACCGTACCTAGGAATGGCAGTGAGAAGGGGTGCCTGAA-AGAACACTGAG------GTGCGTTGGATTGTGG-TTGGTATTTGTACAGTGTTAGTTTTTAGG--ATAAAAATAAACTCCAAGGGATGTCTTTTGTCAGG-GTTGTCCTGTTTTATC-----ATCTTTTTG-----GATGTGACAGATTGGACTATAATTGTGGTCCCCAGAATACAT-CTTGCAG-CATCACCATGTTATAAATGTCGCTTAGAAACTTCTTGATTATCTGTCACATATGTAT--------------TAGACAAATATAAAACCCA--TTTAATTTGGAGTTCGCATTCCCAGAAGATTAAAACTAAACAGTGAA--------AGTCATGATGTACATCTATAGGCAGCTTTAATGATTCAACTGTTACTTAGCCCTTGGAATCTAGTGTTTTTGTTAAATTAACGTTAATCTCTTCCCCACAGATGTAGCGAGGCCTGCTTTTGTTCCTTTAATGTCATCTTGAATGTGAGTGTGTAGTCTAGAGAATGATGGATGCTCAGTGAT----------ACAGCCCCTGGAGATGCTGTGTGGTCTCTCAGTCAGGCAGGGCAGG----TTCTATT-TTATTTGG-TTTCTTTTCAGTTTTCCTCATCTT--CTGTCATGA--TTAAGTTATCAAAGGGCTTGGTATCACCTG----------AAATTTCAAAAATTAGCTAGAAACACTATGATTTTGGAGGCAGTGCTGT----GGTATGTGTAGGTGTCTGAGAACCAGAAAAA------------------------AAAA----------TTGTAAGCTTTCTTTCCTTTGTCCCTCTCTTGCTTTTAAGAAA-----TTGTATTTTTGTGAAAGAAGT--GTAATAGCTACTATGAAATATTC---TTAGTGTTATTATTT-CAAGGTATTTATAATTTT-CTTTTCAGACCTTT--GGATTTAATTAGCCATTTTATTAAGTGTTTTCTTTTCTTTCTTTCTTTTTTCTGTTTTTAATGACCCAGATTCCAAAAGAGTAGAT----CTTTGTAAGAATGGTAACTA----------AGGAGGAATAGGAAGAGAAAATCAGCCCTCGTGCATTATA------------ACTCAGAAGTATGGTGGTGGGTTGGTGATTGTAGTTTGTTTGTTAAGCTAATTTTTTTCTTTTTAA--TGATATGTAAAACTTTCCTCTTGTATGCAATAGGAACATGTCCAAAGGTCTTTCCTTTTGGATGATTTGAGGTCTGAGAGATGATTTCAGGGATAGTCTATTAGAATGTTCTT--AGTCTTTTTTTTCTCCAGAGGCATTGAGAAATTTGAAGACAGTGGACTAAGGTTAGTGTTTCCTCAGGAACTCAACTTTCCTTTAAGAGTAATAAAGAATTTTTAAAAAAATCTGTTTATTGATTCATTTTTTGTTAGGGATTGGTGgtgttgggtggtgtgtgtttgctactgttagcacatggaagtc----agagaacaacttcagtagtcaattttcattttctataatgtgggtctcagattgaacttgggcttggaggcaagtgcccttCAATGCTGTGAGTGGTGAATAAGGAGCTCAGTTAGGA--GATTCTGGGTAAGCCTGTGCATTCATAAGGTG--------------------------CTACTGTACA--CTCCTTAATATTTTGGTCTTTTCC--------------CTCCTTAGGGTTTTACAGACAGCCCTCATTACAGTGATCACTTGAATGACAGTCGATTAGGAACCCACGAAGGCTTGTCCCCAACACCTTTCATGAACTCAAATCTGATAGGTAAGTTGATGTCTCTGTGTAAGCAGTCTTCTCA-AGTGTCTGTGCCCAGAGACCCTTTCT--GTTACCACGTCCTG--------TGTAAATAAATGAAAGAAAGCTCCCATGTGGCTAGAGGGATTCAAGTTTTCCTCACTTAATCCCAGGCTAAGGAACCAGCGTGTGGAAATCAGGGTCTTTCT-TTAGAGCTCTACTAAGAGTGT-----ATAAAAGAA-------AGTATTCATGATCCTTTTAGTTTGAACAGTGTCTTTGTGATATCACACCTGGCAAGTTCTCTG------AGCCAGAGACACATCCTTCAAGGGCACTTG----TGGTTTGCTGTTTGTCTTATCAGGTATATTTACGTAACAATGAAAAATGTGATAAAACATTGA-------CAAATTTTACTCACTTAGGACCATTTTTCTTTGGGTACATTTGATAAAAGATTAATATTTCATTTATACACTATTAGACGGTCTGT-TTAAGTATGTGGACTTTAATTGAGGATGTATAAAAGTGTT--------TGCAATGAAGTGG-AGTTTGAAGGGTTAGACCTCTCACCGACACCTGATCGTTGTGTTTTATCACCAGGCTT---GGTGATCATTCTC----TCCTTCCCTACCTCACGTAAA-ATATTCTCCCTT-----------------TATGTCTTTCTTA-ATCAGA------AGTTGTTCAGTCTGAGATACG----CCTCGCGTTGTGTGTTATACCCCACCCTCCAGATTGGATATCACTCTTTTTAAAAAGAAGTATTTAT-CCTTCTTACAAAATCTGTTTCAAAATAATCTGCCTTGTAACATCATTTTTT--GTCATGTTTATACTGTAGTTGAAAATATTCTAAATGCCTTATGTTGTTTACTGTATTAACTGTCATTGACATCAGGAAAATAC--ACAGTTTGTGTGATGGACATTAATTTC---------------TCTTCA--CTGTTGGCTACTTTGTGATAGTAAAATTGACCTTTG-----ACAACAATGCTAATCTAAGTAGGTTACTC-AGTCCAAGGTCTTGGTGGTCTACAGATGCTTTGTAAGGGATCTTAGCATATGCAACCTTTGTT--TTTTCTTCAC--------TAGTTTAAAGTAGTGAAAGTCTGATACTATAGTGTGGA-TTTGCCTATGGCAGCTGACAGCCTAA------AATCATTGAGTATGACACATGACCTATATAAGCAGTAAAATGTGTGCTGAAA---ACCACTGGCTTTCAACATAAATATAAATAAAAGTTATGTTGATTAATGGGTCACTTTACATCTAAAATAAAACAGTAATTTCACCAAAGAAAATTTCTACATTTTTGTTTTAATTTTCTGTTGTTTTCACTATATAAAAGCttttattttactttaatttttttaaaaaCCTTTTCCATCAAGCAGTATTTGTACTGTATATAACAAGGCAAGTAGAAGTTGATGGTAAAGGAGACTGTCACTCTGAGATGTAAGAATTCATGACTCCTCTTGATTCAGCTTTCCTCATAGATGTGACCCACACCCTCTGCAGTTACCTCACATGCACAGATATGGACCTACGCCACTATTAAAATTGTGGTAAATAAATGA----AGTCTTTAGGatatatgtatgtatatgtatatgcatatgtatatgtatatATGCCATTTCAGAGCATCTGTTAACTAAAAACTACTTCTCTAATTCAGTTTGAGGTTCTGTTTCCTCATTTGGAGCCTTTATGGACATGCATTTGTTCTTTTTTCTGTTTTTGGAGAATTATTAGAGTACCTTTAAAGGTTATCCCTACTCTGTAAAATCTACATTTAAAGTAAGTCTATAAGAGTAAGATTAGTGAACAGGCT------GATTTCTTCACTGTTCAAA---TGAACAAAAATTCTCATTTATGTGACCTACCTAGTGCAGTGAGTCTGGTACGACTATACAGAATGTGTTTTATCTACTGTATTTAAACTGCCCAATTTTAAAG----TATTTTACATTTAAAGGGGATGGGGAGAAATAACCTTGCAGTGATTGATTAGGTGCATGCATCAAA-------------AAGCA------------------TTCCTTACCTTTATTGTTAGT-AAAATGATTGTATGA-ATATCTCAGTATGGCACCTTACACTAAGTGATGTGCATAGCAGGAACTTGCTTTTGGAAATGAATATTTCTTGTAGTGC--AGTAG--GCAATCAGTAA---------------GATGTGAGATGCAGTGGTTGAACTGCTAAGAACCCAAATATATCGATGT-TAGTACTGGATGAAGTTACA------AGAGTCTCTTTTCTAG--ATGTAGTAGTATTAAGGGATTTTCAGTGGTAGAAA----CACTTTTAGAGCTCTCTGCTGGTGTGTGTGTGGTGTTTTGAGAAACACT--GAACCATTGATACCTGATTCCTGCAACAGTTAAA---------------------------------GAGAAGA------------GAGGAGCAGAAAACAGAAGTTGTCATTGCTGCCAGCATACTAATAAGCA--TTAAACAAGA---------AGAGAAATTATTCATCTAGGATATGTTATTCTTTTAATTATTATGTTGATCT---GTAAATACATTTGTCTGGAGAAAGAATAGATGATAAAAGTGTTACTGTCTTTCTTGGTAGAGATTTGAAAACTTTAATGAT----TACATTTCAAAAATCTAACAAGTCTTTT s bosTau2.chr10 34663633 4194 - 70001009 CATTTTTCAAGAGTAATAGTTACTTAATGATGATAAGCAATATTTCAGTGAGTTTTTTGTAAGCATTATTGTCTTATTTG-ACTCTATACCTAAGAATGACAGTGGGAGGGAGTGGCAGAGGAAAACACTGAGATAAATGTGAGATAGGATGTCACTTAGCACTTCAAGATTGTTGAATTTTGAGCAACAAAAGTAAACTTCAAGGAGTGACCTTAGCCAGGAGCCATTCTGTTTTGTATATAGCTCCTGCTGCATGTGCTGTGACAGACAGGACTCTGGTTGTGGTTAGCAGAGGACACGTTTGTAGTCATAACCAAGTTGTAAATGTCACCAATATTCTTTTTGAATGCCTATCACATGTGTATCAGTGATTCTAAAGTAGATAAAAATGAAACAAAGATTCATTTGGGAGTTAGCACTCCCAGCAGATTAGTTTTAAACAGAATAGCAGAAGGAGTGGTGACATGCATCTGTAAGCAGTTGTAATGATTTGACAGTTATTTAGCCCTCAATTCCTAGCCCTTTGGTTGAACTGACAGCA------TCCCTGCAAAGATAGTGAGGCCTGTTTCAGCCCCATTAATGTCTTCTTGAATGTTAGCCTGCAGTCTGGGTAATGATAAATGTTCAGTGATTGATGATTTTATAGTCCCAGGGGATTCTGGGTTGCTTCT--GTGAGCCAAGGCAGTGAGTTTTTGTTCTTGTTTGGGCCTCTTGTAAGATTTTCTGATCTTTACTAAAATCACTTTAAGTTGGCAAAAGGGTAGGTACCACCTACTCTTTAAGTAGGGTTCAAAACCTTG-TATAGAAAGTATGATTTTGGAGGTGATGCTGTACTTGGTATGTATAAGAATCTGAGAACCAGAACAGTTATTTAATCCACTGAGGTTTTGTAACACTTACTTTATTTGTAAACTTTGGTATCTTTTAGGCTCCTTTGCTTTTAAAAAGCAAGTTTTAAGTTATAAGGATGAATTTAGTAACAGCCATTGTGAAATAATAGCACTAGCTTTATTGTTTTCATGGTGTTTGCAGTTTCATTTTTTAGATTCTTAAGAATTTAA-----------ATTAA------------CTATCTTTGTGTTTTCTATTTTACATGGCTCAGTTTGTATAAGAGTATACATGGCTCAGTATACATAGTTATTATACTAGTATTAAAAGGAATATAAGCAGA-------TCTTCTTTTATTAAATATTTGTTTGCCATTCAGAAAA--------GGATTCAT--TTCTAGTATATTGATT-------TTTGATTATTTTTAACATCTTAAGTAAATCTT-----------ATAAT-------TGCCCAAA--CCTTTATTGATAGGGTGTATGGAagcagagaaagga------ggata---------aatgtttttctagtttattataactc-ataagtat-----------------acgttcttagttca----tccaTTTAGAATTTTACTTTC----------------GGGCATATAAAGAGATC-----ATAGGGCTAATTTTCTTTAAAA------------------TGTATGTAGGA-ACTTTTTG-ACTTTAAAATCTTAAAAAGAATAAAAGCAGTACTTCTGTTTAGTTTTTCA--------------------------------------------------------AGTAATGAACCAGAAACTTGGTTAGGAATGACCATTTGTAAGTCTGTATATTAATTAGATGAGTGTCATTATGCTCAATTAGCAGGACTGCCAAATAATCTTTTTAATACTCCGGTCTTTTTTGTTTTTTTTTTTTTCCCTCTAGGGTTTTACAGACAGCCCTCATTACAGTGATCACTTGAATGACAGTCGTTTAGGGGCCCACGAAGGCTTGTCCCCAACACCTTTCATGAACTCAAATCTAATGGGTAAGTTGGTAATTCTCTGCAAGTAGTCTTCACAGAGCCTCTTGGATCAGAGACATTTTTTTCATCCCCTTGTCCAGGAAGGACACATAAGTATCTAAAAGAAACTTCCTAAGTTTCTAGGAACATCTGGGCTTTCTTTATTCAG-CCAAGTTTGCGGGGCAAGCGTTCAGAAATGTGGGTCCTTCTCTTAGAGCTTTATTGTCATTGCTATCAATAAAGGAAGCAGCAGGGTTTTAA-----CTGTCACTGTTGGCAGTGTC--TGTGGCACTAAGCTTTATATATTTTCTACCTTCTGGGCAGAGAAGCAT--TTCAGAGACATTTGCTTTTAATTTACTATTTGTCTTAACAGTTGTATTTGTGTGGTAAATAAAAATATGACAGAGTAGTGATTTTAGGCAAATTTTATTCATGTTGGACAATATTTCTTTTGACA-GTTTGATAAAAACTTAATAGTACATTTA---AATATTGCAGCATTTGTGTTAAGCACTTTGGTTCATATTGGGGATT--TAAAATTTTTTCTTTTTCTATAGTAAATTTGCATTTTGAACGACATTACCCACCGCCTAAAACTGATTAT----TTTTGGCATAACCTTTAAGGTTAACCATTCTCTGTATCTCCCCCTACTCCCGGCAAACCTGCCCTCCCTTTCTCTCACTCCCTCTGCTCTCTCTTTCTTGTATCAAAGTTTGTAGCTATTCAGTCTGAAATGAGAAGCCCTCAATTTTT-------------TCCCCGAGTTTGGATGCCACTCTTTTTTTTAAGTGATACTTTTACCTTTCTGCAGAACCTGATCGAAAAGAATCCGTTTTATGACATTATTTTTTCCATCTTGTTTATGCTGGGTCTAAGCACATTACAAAAGCTTTATTTAATCTGTCTTACTGGTTGTCAGTGGCGTCATGTTAATATGGAAGGTTTGTGTAATTGACATTGATTTCATTACTTATTCTATTTCTTAAGGACATGACCTATATTATGGTTTTAGAATTGTCCTTTTAAGACACAGCCATGCTAATCTAAGTGGATTACCCAAATCCAAAATCCTGGTGGTCGGCAATTTCTTTATAAATGGTTTTATTTTTCGCAGTCTTTGTTTGTTTCCCTTATCCGCCATATAGTATGGTGGAGACAGATTCGGA--------TGTGGATTTTGCCTAAGGCAGTTACCATTTTAAAGCCAGAGTCATTGAGTATGACACAAGGCTAAAATCAGTGGTAAAAATTGTATTCAGAATGACAATTTGTTTCAACCATAAATGAAACTGGGAATCCTAGTATTAAATATATTATCATCTAGGTAAAAATCAGAATTAAATTTAGAACAAAATAATT----ATCCTTGCATTAG---------------GCTAGGGAAAACTTTCTAATCT--TTTAAATTTTTTA------------------------------------------------TTGAACTTGCTGTCAAAGTAAAAT---------AGATGTGATACTCCAAA-------------TAGTTTCCTTT----------------CCTTTTGTAG-TATATCTTTTCCCCAAGTAG-------------TGTTTAATTTATAGTAAGTATGGTAGACCAAACTGTAGGCAGTGTTTTTGTAATTTTACAT--------------------------------------TGAACTAA-----GCTTTCTTAATTAAGTG--------TATAACCGAATTGTGAAAACTCA-------GAAATTGCCCTTTTTTATATTAATG-----------------------------TTCTTACTTT----------CATTT------------------TTAGCTTACAGAGCTGACTCTTTAGAATTGCATCATTATTGTAGCTTTGAGCAAAGGT----------------GACTTAAAATTGTGAG---GGTAC-----------ATTTTCATTGTC-----CATTTTAACTATCTAAGCTTAAAAATGTTAATTTACTTTTAAGA-----AAGGGGGAATGACCTTGAAAAGGTTAGACAGATAGATTCAAAAGAATTGCAGTGATCTAGGCAATATCTGATTTACTACACTTCCTTCCTTTTATTTTTAGTAAAAATGATCAAATGAGATATCTAACTGTTG------AGTCCAAGCAATCTGCATGACAATAGCTAGCTTTGGGAAATGAATGTCCTTTAAATTGCGGAGCAGCTCCAAACAGTAGCAATTAATCCCACTTGGTGTGAGTTGAA----TTGAACTAAT----ACCCTAGAAGGTGGGTCTGTTGTACTCAGTAGAGTTACAGTGGATAGATGCACTTCGTTAGCCATTTGATCATTTTAGAGGAGTTTTCAGGCTGCAAACCTGCAGTGTTAAAG--TAGGACTGAGATGTACATGGCAGTATTAGCAGCATTTGGAACTGTTGATACCTAATCATCATAATAGGTAAAACCTTCAGAGTGATTCTGTGAATGATGAGTGCTGAGAAAGTTACAACTAACTGGAAAGCAG-TAACATATTTCATCATTGCTGTCAACATGTAAAAACACCATTTAAGCGAGGGTGGGAGGCAGTGAAATTGTACATCTAGGGAATGTTGTTTTTC---GTATTATGTTCAGCCATAATAAGCACATTTGCCTGAAGAAATAGTGGATTGT-AAAGTGCTACTATCTTTCATGATGAAGCTCT-CAAACACTAATGATTTTGTACATTGCAAAAA--TGAGAAATTTTTT a score=12654 s mm7.chr9_random 9276059 396 + 9745104 cTAACAAGTCTTGATAATAATTTGATAATGAATAATTTTCCACAGAAAACTGGATTTCTGTA-----TTAGATATTTTGAAGTGTTTTTATGTAGGAAATAAAGCTATATTATTATACTACATCACTGTTTTTTTTTAAAAATGAATTTCAGAATTATCCTGTTGATTTTTCAGTCTGCAATGCTAGAGAGCTTTTCTT-TATTTCAAAAGAAATAAACATACCCTTTGGGTACATAACTAAACAGTTAACAACAGACAGTTCTGTTTGAGCTATGAGCAGAGTCTGGACCGTAGCTGTGAGTTGCAGTGGTGTCATCATGCAGTTTGGGTAAC-----ACAGTCTCCAAAGCTTTGGCTCATTCTTTCACTTGTGATTCCCTCATTAATTTTCATAGT--TTGCCTTC s bosTau2.chr10 34667827 390 - 70001009 CTAACAAGGGTTGATAATGATTCAATAACGAACAATTTGCCATAGAAACATGCACTTCTATATTCATTTAGATATTTTGAAGCA-TTTTACACAGGAAGGAAAGCTATTATGTTGAATCA-GTTAGTGTTTCTTTTT---AATGAATTCTAGAATTATCCTGTTGATTTGTCAATATGGAA---AAGGGTTTCTTTCTTATGTTTCAAGTGAAATAAGTACATCCTTTTGGCATATCACTAAGTAATTAGCATCAAACATTTCTGTAT----TATAGTAAAACTGCAG-----AGCAGTGAATTGCAGTAGGATCACCAAACTGTCTTATTTACTTCTAGCCTCTTCCAA--CTTTGGTCCATTTTTCTACCCTTGGGCCCTTCATTGATTTCATTAATACTTGCTTCC a score=11798 s mm7.chr9_random 9277965 736 + 9745104 TACTGTTTTAGATA-------CCATGTGTACTTCTGCTGTTTTTACTCTATAGCTTTTTCTTTCTCCATCTATTGCGTAGCAC---CTTTATAGCCAGTC-TGATCTGTTGAGTACACTTTACAGTTCTATAATGG--------CGTTGGTCTGAGAGATAGGCCTTCCTTAAGTATTCCCAAGGCCTGTGTCTAATTCCAGCCCAGTGAAGATGAA--CTTAAAATCTGATGATACCTGT----AGTAGGAGAAATGGCAGTTGCTGTGGCTATATAGTCACTGGAGAACAAAAAC--------------TTAAGGAATTTCTATAAACTTTACAGTTTA----AATGCATTGAACTTGAGGGGTGCACCATAACACACAGTTGAGTGTTTTTGGGGGTCATTTGATTTGAAGAAGTCACAGGGCATCATCATCATCAGTTCTTACCTTCTCCATTATGACAGCTCAGATTCATTGCTTAGAGTCCTAATGATGATTCCCACATTGTTTAATAAAGGCTTATT-AGTGTCTTATTGAAAATAAATGGT-------TATACACTAAATAACGCTTAGT-TGTTTGGAGTGGACAGGGCCTAACAG-TTGTTTCCCTGAGGGGCTGTGAGGTGGGACTAATGAGACATGAAGGAGTCTGTCA-GAGGACTAGAGATGAGTGAG---TACTACTGCCGTTCCC----------AAGCTGTG-----TTTCAAAGAAAGGGGTTAGTAGTATTTTAGATAGCTACCACACT-TTTATACGAGTT-TAGTTAACTACGAAATGAAAATGAATTT s bosTau2.chr10 34671108 792 - 70001009 TACTGACTTATATAAAGATGATCACATTTATTTTTATT-TATTTACCC---AGTTCATTTGTTCATCATCACTTGTGT-GTATGTGCTCTGTGGTCAACAGTAATCT--TCAGTAATCTGCACAATTTCATAGTGGATCAGTGGCATAGATTTGTTAAATGATTCTTCCTTGAATCTTCCTGTTGTTTGTGTCTGATTCTCAACGAGTGAATATGAATTCTGAGGATATTCTGAGTTCTGTTTTTAGTGTGGTGGGTGAAAGAGGCTATGGCTGCTTGGTTACTGGAGAACAAAAGCATTATACTTTTTTATTAAGGAACTT-TGTAAACCTGACAGTCTTCCTTGATGTGTATAATCTCAGAACCACACGATGGCACACA--TGAGTATTTGCGACACTGTTTTGATTAGGAAAAGTCCTAGAGCAGCAGCATCA---GACTGTGTCTTCAATGTGGTAATGCTTAAGATTCACTGCTTATGGTTATAATAATA---TCTATATCATTTACTATAGGTTTTCTGAGTATTTTGTTAAAAATAAATGCTAACTAAGTATTAACTAAAATTCtcatagaatatttgctctggaatggatcttacaggtcatctagctcaacGGTTCTCAATTGGGAGTGTTGAAAGAT--ATGAGATTGTCGTAAGGACTGGGAGTAGGGAAGAGGTATGCCTGGTACTCCTTATACCTTGAAAATTCTGGTAGTTTTCAAAGTGAAGGCTTAGTCCTACGTTGGTTAGTGGTCACCGTGTTTATGGAAGCTCTAATTAGCTACCAGATGAAAGTAAATTT a score=3626 s mm7.chr9_random 9278923 109 + 9745104 TTAAAAAATT-GAAAGCATATTTTGAATTGCTTTTGTTTATCTTATATAGGTTTTTATTGTTCAAAGGTACTCATTGAATTCTTTTTTCAGTTAGAT-----------TTGTATTTTGTCA s bosTau2.chr10 34671900 120 - 70001009 TTAAAAAATTTGAAAGCATATCCTGAATTGCTTTGGTTTCAGTTACAGAAATGTTAATCGTTT-GAGGTACTAATGGTAGTTATCATTCAGTTGAGTAGTTGTAACAGTTGTACTGTGTTA a score=29944 s mm7.chr9_random 9279178 1346 + 9745104 AGTGAGAGATGAGGTTTGACGATTAAGT--------------CAGATGGAGGTAAAGAATTTTCTCCCTTCCTTTAAAATGCTAGTCGCAGTTAGAAAGTTCTTAAGCAGTTTTCAGGTTTTTACCAGCTGTAGGAAGTTGGCAGTTGGCTCTGAAGAAGAGCATAAAGGTTTAGGTGAAGCTGTTTGGG---TCCCCAGGGTTAGGTGCTTTAGGCAAATAGCTCCCTGGAGAGAGTGAGTCCTAGCTTAGAGCCCTCTGAGGTAACCAGAGGGAAAAATAGGGCATGGGTTCTGAGGAATTAAATTG------AGAAAAAC---------ATCAGTAAGTTAATGCATAACTTTTC-TTGAATTTTTAAA-ATTCTGCTGGGTTTGTCAAAAT-TGCCTTGAATTTGATTAGAAGTACCGGATGTATACTTGAAATGTATACAAAGAGCCAGTAATAAA----TAAAAATGAGCCACTATGCCATCAAATTTTTTGTTTAGAAAAAAACAAAGACTATCTTATTAGTTAGATCATACTAAATGGGAACATGACATAACA------AAATGAAGGTTTTTT-----------AGAAGTGGTTTTTATTTCTTAGGTAGCAGTATAAAGCAGTTCTTAGAGTAGGGCTTTTTTTTTTCTTTCAAATCATGAAACCTAAAG-GCAAGCAAACCACTGTTTGATTAAAAAGGGACTGAAGGTGAAGTGTTCACATCTTGACCTTGTTGCTTTGCTTCCTTCAGTGTGTC-----ATCTGGCTGTAGGGTACACGTGTCTGCTGTGTAGT-CACTGATGCATGCAGAACGGAGCAGAGGGTCATGCTTGCCCAGTGGGCCCTCTTTCTGAGGGTATTTGTAACTG------GCAGTGTAGGGCCAA-TAGAGAAAGCTAGAAGGGCTAAGATGTCAACTGGTATAAAGGCAATAAGATTCTGTTTTAGGAATGAAA-GGGACATTTGAGTTCTAATAAAAAAACAGACATTTAAAAATATTCTATAAAATAGTTTG-TGAATGTACAATA---ATGGTTATTGATATTGTAAATAGGATAATCTGTTAAATTCCATGATCTT-------TAATTCTATAATTCTTTG------ACCCA-ATTGCTTTGTAAAAATATTAATATTTGCTTTTCTTAGTT----ACCAGATATTTTAAAATGTTCTTATTTTTAG-TAATTTAAGCATGTTGCAT-GGTTGAC----ATTTAGACTAGTATAAATAATTTATCATAGCTAATTGTT-CATATAGTGTTCATATTTGTGTTGAGATAAATTCCAAGTATCACTG--TGTTACCAACATAAGCAGAAATTATTCTCCCCAGGTTCATTTGGCTTATAGTTTTACATGAAAACATTTCATTGCTCATTCATGTTATTCAGTATTCTGACTAAGATCATTTTCACAT s bosTau2.chr10 34676452 1324 - 70001009 AGTCAGAAATGAGGTTCAAGGATTGAGTACCATTTATAATCTCAATTAGATGAGAAAAACTCCCTCCTCTCTTCTAAAATGCTAATCCTATTTAGGAAACTCTTCTGCAGTTTTCACTTTTTCACAAGTCACAGGAAGCTGGC------TCCACAGGAAGAGTTTGAGAATCTAGGAGACGCTATTCTGGTGATCCCTGGGGTTAGATATTTTAGATAAACAACTCCTTGGAGG----AAGTTCTGGCCTAGAGTCTCTTGTGGTAAATGTAGGAGAGAACTGGGGA-GGGTTCTTAGAAATGAAGTTGATTAAAAAAAAAACAAAAGTAGAATTAGTAGGCTAATTC-TAACTTCTCTTTGGATTTTTAAAGATTTTACATAATTTGTCAAATTGTTTTCTAAGCTTTTATAGAAGT------CTTATTTTAAATATTTGTACAAAGAGCCAATAATAAAATTTCCAAAACTCACCTCTGTGTTGTCAAAATTTGTCATTTGTGAAAAACAAAGGCTA---TATTTG-TGGATCTTTTAAAATCACAATAAAATATAGTGCACTATACATCAAGatttttttttaatatttaaaaaatGATTAGTAT--------TAGAAATGTGGTTGAGTCCTCGAAAACATATTTTTTTGTATGT--------GTGAAAGCTCAGGTAGAAACAAACCACC-CTTACTTAAAAAGAGGTTTAAGATGAAGTAGCTAAATCTCAAAT---TTCCCTTTTTTGCTTCATTGTGTCAGTTAATCTTGCTCTGGGTTGTATTTATCTACTGTGAAGTCCACTGATGCATGCAAAACTGAGCAGAGTG-CAGTTTTTCCCAGTGGGTCTTCTTTCTTTGGGCATTTGTATCTGTGCTTCAGTGTGTGGGGTCAGCTGGGGAAAGCTAGAAGGGCTAAGATGTCAGCTATTGTAAAGGTACTAAGATCATTTCCTAGGAAGGGAATGGGACATCTGATCTT---TTAAAAAATATATTTCT---TATTTCCTGTGAAGCAGTTGGAAGTTTATACAGTAGTGATGTTTGTTAATATTGTAAACAGGATAGTCTGTTAAGTCCTGTGCTATTTAAAGGATAATTCTGTAATTATTTGTAGTTAACTTAGGCTTTTCTATAAGAATATTAGAATTT--TTTTCTCATCTTAACATCAATTATTATAA------CTTATATTTAGTTAATTTGAGCCTATGGCCTAGGTTAACTGCTAATTAAACTAGTTCATATTATTTACTTTAACCTAATGTCATATATAGTGTTT---------------TTAATTTTACATGTTATTGTATGTTATTGACA----------------------------------TTACACTTATAC-TGAAGTCA-----------------ACCATTAGGAATCCCAACTCAAAGCAAGTTTACAT a score=15137 s mm7.chr9_random 9280616 1319 + 9745104 GAATAGCCATCAAACTGGATCATTATAGATGA---AATACTTTCACTCAAGATACAATTAGT------------------GAAAATATG-------TCTACTATTGTAGTAGACC-ATCTCTGGACATC--AGAGAAAGTGTAAATCACCCCTGAATTTTCCTGTAATAAAATTGTAAAGC-ACAGCTT--TCAGCAGGAGTTTTCGTGGTAAGCGCAAGGG----TAACGTATCTGATTAGTGTCTCATAGAGTG--CTTGAAAG-CAGTGGTTCCAAAGGTTGGTAGTGCACACAGCATGAGAGAGTTAATCAACAGAGTAACCCATCTCAGGTCCAAACAG---TGATAGTTT-TGTTGAGCTGATTATGAAGAAGGTTTTACTCTGCAGAATGATATTTACAGATATTTGATGCCTGGC-TAGTTTGGAAGAGGGCTTGTCAGTATTCTTACCTTGAACACACTGACAGAGTAAGGTAGTAT------------GATGCTGACAGACATGGAGTCATCCTGGTTTGTCTTACCAGATTCTGACCT--TGTGAATCAAATTTTAATTTTTATTGTAAAATCTAAACAAACGCTGTCCTACTGGAGAAACTCAAGTTGTCTTTTCATAGTGCCT-----------------TGATTTGGTTTTTACAAATTTTGTTGAAAGTTTG----TTTTCAAATGGGGACATTAAAACTATAGTGTCCAACAAAG-AAAATTATGCATGAGTTTTAATGAAGATTGCTGAC-TATATTCAGTTTGACAAAAC--------------------------TTTATAGG---TTTAGGATGTGAATCTAGATAGAATA---------------------TAAAAATGGG-------------AAACAGCAACATATATTTAG----TCAGAATGATGACTGAATGCTTTGAGGCTTTATTTTCAGAATATTCC--ACATT-------------------AATGCAAGCAAG-----TGTG--------------ACATTTCGGC----------------------------AAAGAAGAGCATGCCTGTAGTGCCCATGGACA------------GTCCTACATGTGAGGTCT------------------------------GGAGAGCAGATATTTTTTCAGCGCTCCTATTCCTGGCTGTTCTGATC----TCGCTCTAGTTTTTTTGTCTTTACAGTGGAGCTTGCTCACCACAAGAGCTGGCTAG-------CTGAGTAGGCATCTAGTTAACTTTTAAGTGTAATGTATTTCTTCACTCTAAACAGAGGCATAGAGAAGCTGAATACTAGTTAGTTTCAAGTTAGTCTTCATGAAGACAGTAGTACTTTTGGCTCTTCCTAGAAATTTGTTGTGAGCCTTAAAAGGATGTTTTAGATTAATT--------------------------------------GAGAGAAAGTGGTGGCAA--------------GTACTG---TTGGTGGAAGACCACGCTGAAAG---TGATCAGAGGACAT---CCTATCTTTGTGGTTTGTCTGTGTGGAGTAGCAGAA----TAGGTTGGTGGCAATGTTTACTTTTTTTGAAATTAATAAAATA------------------------------CTTTGTAA s bosTau2.chr10 34677829 1632 - 70001009 TAATGGCCACCAAGCCGTAT-ATAATGGATTAAATAATAATTTGATTCAGTATCCACATGGTCCTGGTATTTGTAATGAGAAAAAAATGGAGATGATTTAGTGTCATAGGAAACCTGACTGAGGAAATTTGGGGGAAAGTCAAAATAATTTCTAAAATACCCAGC----AAATTGTAAAGCTGTAGCTTTCTCAGCTTGCATACTCAAGGCAA-CATAACAGTATATAATATATCTGATTAGTGTCATAATGGGTAGCCTTGAAAGATAATGATTCTAAGGGTCAGTAAAGCACGTGATAGGAAAGATTTAATTAACATGATCAATCA----AGGTTCAAAGAAACTTGAGACTTTGTGTTCATCTGATTGTTTAGA---TTTTATTTTACAGAATTCTGTTTTAAAACATTTTAAGAGTACCATAGTCAGGAGAAA----CGACCGTGCTTTAGCCTTTAAAGCCCTGATAGAATAGAGTAATATCACAAATAGTGCGAAACTATAAGACACTGA---ATCTTGGCTTGTGCTAACAG-CTCTCATCTAATGTGTATGACATTTTTGCTTTTAATACAGAATCTAAGCAAGTGCTTATACACTTGAGAAACTGGAGCCATCTTTCTGTAATGCCCATTACTTATTTCCTCTATGACTAGGCTGTTAGGAATTTGCTTGAAAGTTTGTTTATTTTTAATTGGGGAAAATTAGACTTTTGAATACAAGAAAGAAAAAAAATGCAAGTGTAGTAATGCAGTCAGCTACCTTCTTTCCAGTTCCACAGATCCTTTAATTTGAGAAGCTTAGTCTGTGTTTATAGGCTATTTGGGCTGGG---CCAGATAGAATGAATGCATTGGCTGTTGAAAGCTAAAAATGGACCTGATTCATGTCAAAAAGTAA-AGAAACTGAGATGTTTAAAATTAAG-----GTACTTGGAAGCCTTGCCTTCAGGATATTCTTAACATTTACTGAGTTGTTAAGTGAAAAGGAAAAAGAGTTGATTGTGATAGAAGGAGATTCATATCTCAGCGTGTGGGTTACTAGGCTAAAAATTGTAGACAGAAATGTATATTTTCAGTGACTGAAAACACATTAATATCCTGTCCCAGATGCAGTATGTTTGGTGTTAGTACCATTCGTAGGACATTAAGGTGAAGGCATATTTGAATATCTTCCCTTTTCTGGCTTGTTATGATCCTGTTCGCCTTTTTTTTTTTTTTTTTAAGATGGAGCTCACCTGTGGC-AGAGCTGGCTGGGCCTGAATTGAGTTTACCTCTGGTTGGCTTCTATG--------------TCTCCGTGAACAGAGGCATGGAACAGCTGAATCCCAGGGAGTTTCAGGCCAAATTCTATTAAATCA-TATTACCCACAACTTTTCTTAGAGATTTGTTGCAGGCATAAAAAAGAAATTTTGGGTTCACTAGGGATAGTGGCACTTGCTTATCCTCCTTAAGACCTAAAAGAGAGAGTAATTCAAACCGAGGCCCTTGGTATACTGGGTTTGAGTGAAGATGACACAGAGAGACTTCATTAGCAGACCTTGATAAAATTTCATAGTTTGCCTATATGGCATAGAGGAGTTTTTAGGTTTGC-------TTTATGTATCTTGAAAAGATGAAGGTGAAAgtattagttgctcagtcttgtctgactctttgtga a score=7104 s mm7.chr9_random 9282148 607 + 9745104 CAAGTTGCTGACAATTGAGGACCTCTCTAGAGGGTA-----------------------AGTGAGCTGTGGGACGGGAAAGTTACTCAGCACTGCATTAGCCTGTGGTCTGATAATATTTACATTTTCT-TGGTGATCTGACAACAGCACAATGTAAA----------------------------------------------------------------------------GAAACTCAAGTAGCATTTTTAGGAATAGCTCCTAAGTAAGCTCTGCTTGCAGGGAAATAGCTGCTTTGGCCTGTGACTTAGAGGATGAACATGTCTC-CATGGAATGCCC--------------TCAGCTGTCG---------------CAAGCTACAACTTGATTTCAGCAGCTGTTTGGATGC--AGGCACTGCAGT-GGGCAACTTGGAGCTCACATTGCAGTGCTCCAGCAGTGTCGCAGTTGTGGTTCCATCCTTTCACAAAGTACCAGGGAACCTTGATCGTGTGAGGAAA---TAGTGTGCATAAACAAATCATTTTTTTTGTGTGAGATTAATTTGGTATGGAACAAA--CTAATACTTTCCTTAGAAGAGTTGAAATATTACCTGTCTTCACATTATATTGAGTGATGGTCTCTGTGTACTAAACACTGTGGTCAGGAGTGCCAGAATATGGTAT-----------------------------CACCACTGGGAGTTCACACTTTGTACTAAATAAGTTCCTAATGTGTA s bosTau2.chr10 34679751 748 - 70001009 CCGGTTGATCACA----AGAATATTTCTGGAGGGTATGGTTTATATTTATATTTTCTATAATGTGCTTCAGAGGAAGGAATATCCTCTGCTCCTTCTTAAATCTTGGGAAGGTGGAATTGAGAGTTGCTCTGGAAATTTTTCAGTTCCGAAGCATGAGCCTGCTCATAGCTGAAGGTTCTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCCTCAAGTAGCTTTTTCAGGGATTGGCCCTGGGTTAGCTGTGCCAGAAGGTAGATCACTGTTTTGGCAGATTAATTGGAGGTGGGAAGTAATTCACTTGGAATGCCCCTTAAGGAGCTCTGCTAACTGTGAGTGATTGTGCCTGGCCAGGCTGCAACTTGATCTCAACAACTGTTCAGATTCAGAGGAGCTTCTGTAAAGCAGCT-----------TTAGTGTTCTTTTGGAATGTAGCAGTTGAGTTGCCATCCTTTCAGTAAGACCTAGGTGGCCTTGATTTTCTATGGAAAAACCAATGGGC--AGGCAGTTCATTTT-----AATGAAACTGGTTTGGTACAGCACAAATTCTGATTGTTTTCCCATAAGAGTTTTAATATACCACATGTATatatttcgttgagtgc---cttctaagtgttaaacactgtgcttgtgagtgtgagaa-atagcatgatgaaaaagacagcattatctgcAAAAGAACTATTCTGGACTCAGACTTTGTATTTAACAAGTTAATGATGCATA a score=13250 s mm7.chr9_random 9283173 497 + 9745104 CTGCTTTGTCATGATTTATTT--TAGCATCAGAAAGGCCAACTCTAGTGTTGCTTATTCCTCTGCCTTGTCTCC-TTATGTTCTTTCTAAGCACAGACACAGCCCAGTCCC-TGGCACTGACA--TAACAAACATCAATAACAACTTCTGTAAATGTTAAATTAAAGGACAAAGTGAAGGGCAGTGACTCATTAGGATTTTTTTTTTTTTTTGAGCAAATTAACTCCTCTTCCTGCTGATGCATGTTGGGAAATGATTGGCTGTCTCTTGAGC--------------------GAGAAATGGTTCTGTTAGGGATTGTGTGGCGAGGGGCTTCTTTG--CTGTAGCAGGCA-TTTGGATATGGGG-TAGTGCTTTTTGTTTTAAATA-------GCCCTTTTAAAGCTTTAAAAATATATCTGCCAAGTTTTACCAATTTTGAGATGATATTAACCTTAATTTATTCAGTACTT-TTATAGAAAAGATGAACtttgt-tttaaagatttatttatttatttt---tatgtatgtgagta s bosTau2.chr10 34684836 533 - 70001009 CTGCCAGGCCAGGATGTATTTGGCAGTATGAGGAAGGCAAGCTTCAATGTTGATTATGATTCCACCTCATCTCCATTGTGTTATTTCCAAGTACAGAGGCAACTTGGTCCCCTGGCAGTGGCAAATAGTAGACATCAATATCAACCTTTGTAAATGTTAAATAAAAGAGCCAACTGAAGGGCAGCGATTCCTTAGAA--AGGAATTTTGTCTGAGCAAATTAACTCTTACTCCTGTTAACCCATGTTAAAAAATCA----CTGCCTCTTGAGTCTTTGAGTATGATTGAACTGGAAAGTCAATCATATTGAGTTGAGAGAGATGAAGGGCCTCTCTTCCCTTTAGTGGGTGCTTTGAATTTGGGATTTGTGCTGTTCTTTTGAAACATCTGGGTGTTTTTTTTCAATTATACTTTGACATCCAGCCAATTTAATCAGCTTTAGACTGATATTTACCTTAATTTACAGAGCAGTTGTCAGAAACATTATGAACTTCGTATCTGTGGAGAAATTTTTTTATTTTAGATATTTCAGTGAGTA a score=4736 s mm7.chr9_random 9287211 287 + 9745104 gtAAAATCTCACTCATTTTAAAATGACTTTTCTTACTTTGTTTTTCTCTTCCAATAGTTTTCTTTCTTTTTCATGGTGTTTTTAAGTCAATGTGAAATTTGTTTATGCTACATACTATGCTCTTTCCTTAATCTTAATCTGGTTTTGCGCAACAGAGAAGAG--------TTTGATTT-------ACTCAGTCACAGAATTTTTAGTGAATTTATGCCAAAATGAACGAAG---AAACAAGA----ACTTCCCATGATAATGATGGTATGATAGCT--GGTTT---------ATGCCCATGTGTCATTCAGTGTAAGAAG s bosTau2.chr10 34689997 297 - 70001009 gtcaaaTGTCACTTCCTTTAAAAAGCCTTTGCTTG----ATTTTTCCCTCA-------TTTTTATCTTTTCAATGACATCTTTAAGAAAATGTGAAATTTCCAT---TTAGTTTCAAGTCTGTTTCATCAGACTTCAAGCCATTTT---------AGTAGAGGGATTCCTTTTGATTTTTCTGAAGCACCGTCACAGAGCTTTGATTACACTTGAGTCAAAACCAAAGGGGGACAAAAAAGACTGTACTTCTCATAATGATGGTTATATAACAACTACAGTTTGTTCATCACATCCCTCTGGGCCAGACATTATGAGAAG a score=3149 s mm7.chr9_random 9287836 41 + 9745104 TTTTTATTAATGAACTTTATTTTGAAGCTGAAACCACTGCT s bosTau2.chr10 34691701 41 - 70001009 TTTTTTATAATGAACTTTACTTTGAAACTGAAACCACTGCT a score=15586 s mm7.chr9_random 9291049 1099 + 9745104 TTGCTTGTTTGAGGAATTTTAAATTAAGTACTTTTCCTTAACATCAAATTATCTAACTGAAATCAGAGCAATTAAATGAGCTTACTAATCTCATTTAACAAGTAGTGTTCTGCTTTTAAAAGGAGATAGTGTTCATAGATGAGGCTGTATTGTGTTCTGGGATGAGTA--GGTTGATTACATGGGGAACTCTGAACTTCTGTTGAGGTGTACACAGCTCACT-GGCTGTCTCGAGTATATTTTCATTGCTTTTAAGTCAGCTTCAGATACAGA----TTCTTGGTACATTTTCATTCATATTAATAGTAG----------------------------------ATACCTATAAGCATGGAGTTGGTTAGTTACTT----GCTATTCAAGTGAAAAAAATAGG-TAGTTTCATTTAATTATTGGATTAGAATCAAAGCCATATTTAGCTCTCTTTACTTGTTTACTTGAGTAAGGCGAAAGGAAGTAGCATTTCATGCAGGCCTGTCACTGC-TCTGACCCTGCATTCGATAGCTCTGTAAAAGTGTTATTTTTTAAACCTTTGAAACTCAGAGAGTTTATTGTATTTTCTTTTTCTTATTTTTCTGTGGTAACTGCTATTACAATTCTATGCT--TCAGTGTTTTGaataataattttatagagatatgataca-ctataataaaattttcccttttaaagtacccagatcaatggtttttaatatcttc----------------agacttatgtaatcatttcctctgtctggcttcagaacactgaaacctattccagaagaaacctcgttcttacgagcactgaatttctat--tccgttcagcc------ctggcaccagctagttt-cattctctccg--tggacttgcttattttgggcattgtacataa--caaatcataaatgaaatggtttttgatgagctcttttcacttagcgtggttccagggtttat--------------------gactatattcccttgtatgaatatatgacattttatt------------tacctacccatcatttaattaaagtttgatttgtattaccttctg-----------------gttgttaccagtgtagtgtacacttttgta--gacatgtttccaatttttt---gtatataATTATGTATCGTTTTAAGTGAAGTTTATTCTGAGAAATATGTCCTTATATACAAACAT s bosTau2.chr10 34694771 1144 - 70001009 TTGTTTGTTTAGAGATTTAAAAAATAAGTTCTTT-CCTGAATATTAGAATATTTAATT-----CTGATAAATTAATT-----------------TGAACAAG--GTATTATTTTTTAGAAAGGAAGTGACGTTCGTGGCTATAGCTTCATTGT-TCATGAGACGATTGCTGATAGACTTCAGAGGGA---------TTCTTTAGAGTTGTGTATAACTAATTAGGTTGTCTTCAATAGATTGTCATTATATTTAGTTTAGCTTCAGATGTAGGCCAGTTAATAAGTCCTTTTCTTTCAAACTAATGATAGGTATGTATGATCTAATTTTCTTGACTGTAACTGTATACCTGTAAATATGATGTATTTTTGCTCCTTCTGTGCTAGTCAGATGACAAGAGTTGAATAGCTTCATTAAGCTATCAGGTTAAAATCAAAATCATATTTAACTTCTATTGTTTCTGCATTTGACAA-----AAAGGAGGTCATGTttcattaagaaccttcaatgtgtctgagacatcatgc-agagtgctttaacttattagttcatttaatattcataacccttggaa--------gtgcttttgttgttatTTTT-------------------AAATCTTTGATACTCAATGTGTTTaatagtagctttgttgagatattatccagatactataaaattcactcttttgaagtatacaatttaatgttttttagtgtattcttagagttgtattcttagagttgtgcagccatcaccact-----aatttagaacatttttatcactctttgaagaaacccagtacctattaaaagtcagttctcattctctcttcaacctgccctctagcaaccactcatctactttctgtcagtatggatttgtctgttgtagacattgcatataaatagaatcatccaatatgtggtctttgg-acttttttttcaattagtatattttcaagattcatctatgtttagcatgtatcagtacttcatctctttttatg-ctgaataatattccattggatggatgtaccatccatccactcatcaattgatatgtgaattgtttctactcttgctactatgaataatactgctgtgaacattggtatacaggtttttgtatggacatgttttcagttttcttaagtttatatgtagggatagatttg-------------ctgagtaatgcagctctatgtttaaccat a score=18664 s mm7.chr9_random 9292719 744 + 9745104 TCtttaactttaaacatcatagtaagtgg--agacctccctgaaatattgatgtgcatttccttcatgactaataattctaggcaacatttcatgtgcttgctgcccatgttcctttttagtttggagaaatgtcaccttgggac-ctatgcTTCAA-CTCTGAA-TGGAGATAGCACTTCTGGCCTG----TTTTCTTGAGATTGATGTGATGAGAGGGTGTGTCTGATGTTCA--GCGTGGCCTAGCACTTAGGAGAGAGACATTTCCTAAGTGATTATTACTTCCTTCCCGTTCCATCTCAAACCTCACAGTTGAATAGGCTGAGGTTTAGAGGGAGGAG-------------------------------------CCACA--------TAATTCACCAGAGTTTATTGGGTA---AGT--GTGAACACTAGTTGCAAATTTACAGCTTTCATCTTG--CTTCTGGATTCAGCAGTG---TTCTCACTATAGCTCTCCTCTTTTGCCCTTGATGAAG---TTTCTCCATGAAACTCTGTCTGTAGGTC----AACTTAATT--ATGCAGCTGTTCTTTATATCTTTGCTGC-AAAGCAAACATAACTGGTTTAAATTCAAAGTTGAATTTAAGAAAATCTTTCTTTCAATTGACT----------------------------TGCAATAT-GTTGTACCTAAGTAAACACATGACTGTCTTTTTCTTACATTCTCACCTCTCTAGGGTAAAAT-TCCGTAACAGGTGAAAGGCTCAATTT-----GGATATATGTCTTACATGACCA-CAAGTGCTGCATCAGCTAAAACTGTTGAGAAGCTCTGGTTTCC s bosTau2.chr10 34696025 822 - 70001009 ttttttattttggccacccttgtgggtgagaaaacctcactgaggttttgattttcatttccctaatgactcataatattaagcatcatttcatctgcttcttggctacttgtatatcttctttggagaaatgtctgtttgagattccattctttaatCTCTGAAATGGAGGTAGTAATTCTGGCCTTGCTCTATCCTTAAGGATGATGTAATGAGAGGATGTATCTAATGTCCATCACAGGGTTTGATCCTTA----AAAGACATGTATTAAATGTTCATTGCTTCTTTCCCATTttatctccaattccacagatgaagaaactggggcttagagaAAGGGGGAGAGAGGGAGAGAGAGCAAGCATGTGACTGATCTATCCACAGGATCAAGTAGTCCTTCAGAGTTCATTTGATACTTAGTTGGCAAATGCTAGTTTCAAATCTA------TCATTGAGTCCTAGTAGATTCAACACTGTATTCCTTGCAAGAGTTTCTCCTTTTTGCCTTAGCTGAAAAACTTAGACTATGAAATGGCTACTATGAGTCAGCAAACTTAGTTACATGATATTGTATTTTATATCTTTGCTATAAAAACAAATGCAGTTGATT----TTTAAACTT---TTCAAGGA--------TTTTAATTGACTCCTCAATTAAGTTCTTTGGATCAGTAAATACAAGATAATAGAAGTCAAGTAAATGCAAGAC------TCTTGTACACTTTTGCCTCTCTAGTATAAAATGTCTCTAGTGGATGAAGGGCTCAATTTTGCAAGAATGTGGATGT---GTGACCACCAAATGATATTTCAGCTAAAACAATTGAGGAGCTCTGATTTCC a score=4088 s mm7.chr9_random 9293463 140 + 9745104 GATGATGATATATATCACTGCTAAACTAGTCTGTGTCTG------GTTTATAATGCACAGGACAGCTGAC-TTTGATTGACCATTTGGTTTGTTTGTGGAGTCTAGAGAAGTGTC-----TGAAAATCATGTACAAAATGAATTTCTCTTAA s bosTau2.chr10 34697073 147 - 70001009 GATGATGATGC----TACCTTAAAGCTAGCTTGTTTTTAAATGTAGTTTACAGTAAGCAGGACAGCTGACATTTTATTGACCATTTTGGTT-TTTGTGGACTCTAGAGAAACAACATTGATCAGTTGTATGCAAAAGATGATTTTTTTTTAA a score=5762 s mm7.chr9_random 9293606 192 + 9745104 TTGTACAACTAACTATAGAAAAAGGAAAGGAAAAAAAATCTTTCCAAACAGAAG-AGAAAC--TAACTCTTCTGGTTTGATTGT----ATTCTGGTTTTCTAAGGTGTATTAA-AGGGAGACAGTTGAGGAATACATTAAGCCATACCTGCATTTAATTCTTTCCATAAGAGAGCCATCGCTtatagctgcctcttgtga s bosTau2.chr10 34697770 181 - 70001009 ttgcaCAA-----TCTAGAGAAAGGGGAG------AAATATTTCTAGATGGAAGCAGAAACCTTTACTCTTTAGGGTAGATTTTCTTGATTCAGGTTCTCTAGAATGTATTATTAGGGGGCCAGTTGAGAAATACATTGACCAGTATCTGCAGTTAATGGTTATCATAAGGTAGCCTTCCATT--------TTCTTGTGA a score=6949 s mm7.chr9_random 9294718 225 + 9745104 tctttcaaatcaagaaatcaacacttagaaaacttatgagattgattgagaagtcacaaagttaat--gtcacagagatgggatt-----------ctgcctgactcccgagctcTTCTGT---------TGTTT--TGCCTTTGAATAGCATTTTGTATTCATGCCAGCTAAACAATTGAAAGTTCAGTTTTATACCTCACTTCCTGAAACATCATTAACAGGCAAACTTTTTAAAATGTTTTTTGTT s bosTau2.chr10 34698202 233 - 70001009 tttttcaaatcaagaaattgaggtttagcgagtttaggtaactcatccagaagtcacaaaattaataagtcatggaactggcatttaaaccaaatactgtctgattccaaaactgctctctgagcctttatCTTTAATGCCTTTAAATACAGTTTTGTATTCATGATAGTTAAA-AGGTGAAAGTGCAGCTTGCTACTTTGCTTTTCAAAGCAT---------------TTTTAGGAATGTTTTTAGTT a score=195829 s mm7.chr9_random 9296049 3963 + 9745104 AGTTAGGACTTGACATAAAATCTTAAGTAAACTGTCTGAAGTTTTGTATCCTTTTCTAGTCTAAGATATCTCTATTTGGAGAAAAGTTAATTTTTCTTTTTAAAGTTGAATGGTAGATAGTAATTTACCAGCAAGATTATTTTTTCAGTTGTCTCTTTGTGAAGTAATCAACATTGTATTTTTCTTTGTCTAATCACCAGACTCCTTTC--------------------TCTGTTAAATATATTTTATTTTATGCATACATTTTTTTCTTTTGGTCTGTAGAATATATTACCACTAGTAGCCTTATGTGGATAAAATATGGTATTCATTTCTGTAAGAAAGTAAATTCATGTATATTTAGAATCCAAATCTAAAATATAAATTAATTTTGTTTCTTATGGACTACCTTTACAGGATACAAAATATGTATGATATTAGA--TAAAAATCA------CAAGTCAACTTTTAGGGTTGTCACAAGGTTGGCTTAGACTCTGCTACATGTCT-------------ATGTGAACCCTGTCTATGGTAATTGATGTTCCTAATGGGTTCTAAGGACCCGGGCAGTTCTAAACTGCCCCCTGAATTATCAAAGAGATCTGCTGTTTAAGAGCAGATGTATGCCCAGCCTTGTTTTACCAAGGATTTGAACTGGTTTGTTTGCTTTTTTAAGGGTGAAACATATATTTTCTTGCCTTTCTTTTATAATTAGGTC-------------ATCTGATTAG---GTTATCCAGAGGATTTAGTTATCCCAGATATCTCTGCCAGCAAGA-CTGAGTAAAAGGAACAAACAGGAGCTCTAACTAACCAAGTGCATACTAAC----CAAGGAACTCTGAGCTGCTAGAGTTAGAGCAGTGTTTGCTA-CAATTAACCTATTTCTCTTCTTATGTAATTATGAACTGTACAGAGTCAACCCTCAAACACTAGAACCATAAGAGGCAGACAGAACCCATCATACACAGTTAGGGTTTTTTTTTTACTGCTCAAGCATCTTTTTTTGTT-----GTTGTTGTTAGATTGTTTTTAGAAGGATACAGAGCCTTTTTATTCCTAATACAGAATTACCAACTATCCTTTT-ATTTTCGTTCTCCTTTGTCCTTTATCTCTCCAAGCATATTATTGTTTAACAGTTGCTTTGTGTATGATACCAGCCTTGCATGCCAACTTTAATGTGGCAGAATGAACCATGTTGCTGTTGATCTCACCCTGGACAAAATAGCCATCTTTAAATAGGAAGAAGTTTCTAGCTTCAGGTTGCTTCAGCTC-TGCATGC-TTGCCTAGCCTGCCGTGTAAAGTCAGTTGCTTCACTCTAAACAGCACTGTATTAATATGCACAACATGACCATTTTCAGTAGAAGGTTATTAGAATGCTAGTTTGTATCCTCTAGTGAATGAAATGATGTGTGATTATGAAGTCATCAGGCATGGACCAGTAAGACTCCAGAGAGCCTGCCCCCTCCGAGGTCCTCAGGGTGCCATTGATTGGTGGCCATGTGTTTGTGCCCGATAGACTGTGAAATGGTGTGTTGCTACACGGCTGTGTTGCACCTGCGCCCCACCGAGGTGATTGATTGGTTTGGTCATGTGGAATGTTCCCATCTGGTCTGCAGTAATGTGGTTTTTTTTTTTTTTTTTTCAACTGCGAATAGCAAGTACTGGCTGGATAGTTACAGCAAACTGTTTCAGGAGCTAAATAATCCTTT-CCTCTGAGCACAAGTCACCATGTAAAGGGGTTTTGGttttttttttgtttttttgtttttttggttttttttttttGGCTAACCCTGTTTT-ATGAA--TAGTAATTCTCCATCAGGTTCTTGCC-CCTCTCTCTAGGATATTATATGCCTCTTTCTT--AACAGATTTTGTCTCCACC--TCACACTAGATTAAGATACACTTT----ATTTCTGAATTGTGTGAGCTTAAAACAGATTCAATTCTCCTTTGCTGCTTGTTTTCCTGACAATTAAATTCTAGGTGGCTTTCAGGTTTTTTTCTAGAGATGGTTTCTGTGATCGTAATTGGATTATCAGAGTACTGATGTATTTTTAAGCCTTCATTTAACCTCACAAAAGTAGTCCTTTATTTATCGAAAACTACTGATGTTGCAGTTTAAATGTCAAGAAATTATTTATTAGGTCCTTTTAAAAAAAGATTCTATAGTTACGTTGGGCGGTCTTGTTTGATATTTCTTAATCTTAGTCCTTTTTCATAATTGATCTATTCATTCTACCTAATGACTAATTACATATCAGAGCACATCATCAGCCACATTCATCATAGTAGAATGTAATAATCAATGACATTTCAACAAAGGAAAAAATAAATATGCAAATAAGGCCTCATTAACATTTGCATGAGTTGTTTGAATAATCACGTTGCTGACAAGGCTGTAATTAACAGAAATTGATGCTGAGTTCAGTATTTGATAGTGTGTTTTCTCAGCATTTTATTGTTGTCACTGCGGGGGCTGAAATGAAGTTCTGCTCTACTTATACCTTGACTAGAGTT-----------GATGTGCCGAGTACCAAAGGCTTGTGGGAGCCCTTGATTT-TCTGTGACCTGCTCTTAAATGCATATGAAGATACTTTACTTAAATTGCGTTGGTTTCTTTTTCCTTAATAAAGCTCAGTTGCATTTTAACAATTATAAAATGACTGTAGAAAGAAAACAAATATAAGGATTTAGAGT-TTTGTTATTTTGCCAGAACTGATTTATCTGAATCA------CTAGAATTTCAAGGTTTAGTTTTGCTCATACCATGGAAAATTGCTGTCATT-AATTTTTTTCCCTCTTAAGTCTGCCCCAGTAGATCACTCTGGAGAGGTTGGTGTGCTTACTGTAATTGAAAATCACTTGCTTAGGCCAACAGCAACAATGACAAAAGCCTAATTATAAAATGCACAGTTTGAGGGTGTGTGTGTGTGTGTGTGGTGATTTTTTTAAATAACACTGCTC-CCCACATTCCTCCTCCTTTTCCTGTACTGTTTCCTGTTTTTGTCATGGATATTAACTGAAATGTGCTAAACACAATAAAGCTGTTTATGTCAGTTTTTTGGATGACTGCAAGTGCTGATTATAACAAGTTTAAGGAATTTCCTTTGTTGAATGTGTACCCGTGCCATATGGCTCAACACGGAACATTAACTTGACAGGGATAATGGATTGTGCTGTATGGAGACAATTTTGCCTGCAGCTTTCCTATAACTCATTCTGGTTGGGGATCACAGGTTTCTAGTATGGGATGGAGCAAACATCCAGATGGATTTACTTTACATAAAAGAGTTGCATTTCTTTTTATTTCCTCTCTGTAATTGGAAAAAGGAGATTTTTCTTTAAAGAAGCAAAATATTAAAAAGAAATGGAAGATTTAAAAAATCT----AAGAAAAGCCTGGATTTTTGTGTAATCTTTTTGTAAAATGCTTTGAAAGATGATTATTTCTGTGTATTTAGTGCATG-CATTTTTAAGTCG-GGTTTACATAAGCTTATGACACT--ATCTTTTGA-------GTCTAAAGTGGATCTTCTTCCCTTTTATA----------------------------TTTATTGG--ATTGCTTCAGGACTGGGAAC----AGGAA-AATCAGTGCCTTTTCTGATGTT--------CTTTAGTTATGATCTTCCG-AAGATCATGTGCATTTGT----------------AAGTCTTT---AAAAAGTCTCTGCTTTTGGCAATG--ATATTTTATAAATCATA----ACAAAGTTTATTGGTTTTGTT-AACAGTAATGAAGCAGAATTGCTGACTGCTGGTTCCTTGGTTCATTCTGTATCTCTATGAAAGTCATTCTAATTGATTGAATGAGAATAAGAAAACCAAAAGCAACTC--CAGAAACA-AAATGTAACCAAGTATTAATTACTAGGCTGCTAAGAG--------------TGCTGAGAGCTAACATGGAGTTTAGGTCAGAGGGAAAGAAATGTGGAACATAATCTTCATGATATGATCT------GCTAAGAAA--------------------------------------------------------CTAAACTTAGGTGATATGTGGAACTGACATTATCCATTGACT-ATAGGCAGTTCTACA-CTGTCTATTTAAATTAAA-TCTTGAT s bosTau2.chr10 34699036 4036 - 70001009 agtaagaatttgaactagaattcta-gtcttctgacttgaatcttgtgtcttctTCTAGTCTAAGATATCTTCATTTAGAAAGAAGTCAGGCTTGCTTTCTAAAGT-GAATTGTATGTGATAAGCTATCAGTGAGATTATCTTGCCAGTTACCTCTCTGTGGAGTAATAA----------TTCCTTTGACTAATCACAAGATTTATTTCCCAAAGGAACTGACCTCTATTCTAGTAAGTGTATTTT-TGTAAAACGTGTATTCATT-CTTTTAGACTGTAGAAGATATAATCACTTTTAGCCTTATGTGGGCAAAGCATGATACTCATATTTGTAAGTAAGTAAACACCCATGTATCCAGAATCCAAGTATGAAATGTAG---------TCTTCTTAT-----ATTTTTTTATGAGACAAAATG---ATAATATTAGCATCAAAAATTAATTACCCAAACCAACTTTTAGTGTTATCA-GAGGTCAGTTTAGACTCTGTGAGTTGCCTTGCACTGGTTTCCATGTGAACCCTGGCTCTAGTGATTGATGTTCCTAATGGGATATAAGGATCTATAAGGTCCCCAGCTGCCCAGTGAATTATCAAATAAAGCTGCTTTTTAAAAACAGatttacacccagccttgttccaataaggacttgagttgactGGTTTCCTTTTT--ATAACAAAACGTATTTTTCCTT---TTTTTTTTAAAATTAGATCCTGTCTGCATGGTATGTGGTTAATCAGTTACGCACAATACTCAGTTTTCAAGGATATCCCAGCCTACAACCTCTCTGAAAAATGAGCCAACAGGAGCTCTG------TGAATGCGACCTAACAGAGCATGGCACTGTGCCTTGGTGGCATTCTAGCAGTGTTTGCTGGAAATTGTTCTATTTATCTTCTCCTATAAGTATGCACTGTACAGAGACACCCCTCAAGCACTGGGAAAATGTGAGGAAAATAAAGCCAATGAAATACATGTAAG---TTTTATTCATGGTCACATAATTTTTATTTGCATTTCAGTTTTAGTTAGGCTAGTTT-AGAAAGATGGAGTACGTTTTTATCC-------ACAATTAGCAACTTCCCTTTTTATTTTCATTCTCCTTT-------ATCTGTTCAGGCTTACTATTGTTTAACAGTTGCTTTGTGTAAGATAGGAGACTTACATGCCAACTTTGATGTGAGAGAATGGATCATATTGCCGTTGATCTG--TCTGAACAGAACAGCCATCTTCTAATAGGAAGAAGTTTCTAGCTTCAGGTTGTTTTAGCCCCTGCATGCCTTGCATAGCCTGCCGTGTAAAGTCAGTTGCTTCACTCCAAACAGCACTGTATTAATATGCACAACATGACCATTTTCAGTAGAAGGTTATTAGAATGCTAGTTTGTATCCTCTAGTGAATGAAATGATGTGTGATTATGAAGTCATCAGGCATGGACCAGTAAGACTCCAGAGAGCCTGCCCCCTTCGAGGTCCTCGGGGGGCCATTGATTGGTGGCCATGTGTTTGTGCCCGATAGACTGTGAAATGGTGTGTTGCTACACGGCTGTGTTGCACCTGCGCCCCACTGAGGTGATTGATTGGTTTGGTCATGTGGAATGTTCCCATCTGGTCTGCAGTAATGTGGTTTTTTTTTTTTTTTT--CATCTGTGAATAGCAAGTGCTGGCTGGATAGTTACAGCAAACAGTTTCAGAGGCTAAATAATCCTTTTCCTCTAAGAACAAATTGGGATTTGAAGGAGTAT------------------------------GTTTTT--------GCTCGCCTTGTTTTTATGAAGGTAGTCATTCTCTTTCAGGTTCCTACCACTTCTCTCTAGGATGTTATACTCCTTTCTCTTTGACCTGTTTTCACCTCTACCCTTCATACTAGATTTAGGTGTACTTTGTATATTTCTAATTTGTGCAAATCTAAAGCAAAATCTGCTCTTTTTTGCTGTTTGTTGTTCTGACATTGCCACTTGAGGTGGTTTGCGG---TTTTTAAAAAGATGGTTTCTGTGATCATAATTGGATTATCAAAGTACTGATGTATTTTTAAGCCTTTATTTAACCTCACAAAAGTAGTGGTTTATTTATTGAAAACTACTGATGTTGCAGTTTAAATGTCAAGAAATTATTTATTACGTTCTTTTTAAAAAAGATTCTATAGTTATATTGGGCGGTCTTGTTTGATATTTCTTAATCTTAGTCCTTTTTCATAATTGATCTATTCATTCCACCTAATGACTAATTACATATCAGAGCACATCATCAGCCACATTCATCATAGTAGAATGTAATAATCAATGACATTTCAACAAAGGAAAAAATAAATATGCAAATAAGGCCTCATTAACATTTGCATGAGTTGTTTGAATAATCACGTTGCTGACAAGGCTGTAATTAACAGAAATTGATGCTGAGTTCAGTATTTGATAGTGTGTTTTCTCAGCGTTTTATTGTTGTCACTGCGGGGGCTGAAATGAAGTTCTGCTCTACTTATACCTTGACTGGAGTTTGATGTGCTGGGCTGTGCCAAGTACTAAAGGCTTCTGGGAGCCCTTGATTCATCTGTGACCTACACTT-AATGCATATAAAGACACTTTATTTAAATTGCCTTA-------TTTTTTTAATGAGGCACTGTTAGATTTTAGCAATTATGAAACAATTGCGAAAAGAAAACAAACATGAAATTTTAACTCATTCATTATTTTGCCAAAGATGCTTTATATGAATCAGATACTGTAAGACTTTAAGATTTAGATGTGTTCATACCATGGAAAATTGATGTCATTAAATTTTGTTTTTTCTTAAATATGGCCCAGTGGATCACGGTCAAGGGGTTG--GAGCAAACTGTAATTGAAAATCACTTGCTTAGG--------------AAAAAAAATCTAATTATAAAATGTACAA-------------------------------TTTTTTTAATAACTCTGCTCTCCCACATTCCTCCTCCTTTTCCTGTACTGTTTCCTGTTTTTGTCATGGATATTAACTGAAATGCACTAAACACAATAAAGCTGTTTATGTCAGTTTTTTGGATGACTGCAAGTGCTGATTATAACAAGTTTAAGGAATTTCCTTTGTTGAATGTGTACCCGTGCCATATGGCTCAACATGGAACATTAACTTGACAGGGATAATGGATTGTGGTATATGGAGACAATTTTGCCTGCAGCTTTACTATAACTCATTCTGGTCGGGGATCACAGGTTTATAGTATGGGATGCAGCAAACATCCAGATGGATTTACTTTACATAAAAGAGTTGCATTTCTTTTTATTTCCTCTCTGTAATTGGAAAAAGAACATTTTT-TTAAAAGAAGCAAAATATAAAGAAGTAAACAAAGAAGGAAAGATTGTTCAAAAAAGAAAAATGGA-TTCTGTGCAGTC-TTTTGTGCTATGCTATGAAAGA-GACTACTTCTGTGTATATATAGCACATTGCTTTAAAGTCATGGTTTACATTAGCTTGTATTATTTATTCTTTTTAAAGAAATGTCTAAAATGAAT----TTTCCTTTTATAGGATTAGAAAATTGTTTCTATCAGCCTTCTTATAGGCTAGTGTTTCAGGTTTGTAGACCCAAAGGAGCAAGCAGTGTCATTTCTGAAATTTGGTATTGCTTAAACAGTAGCCCTCCATGAAATGAATTGAACTTGTTAGATTTAAGATAGAAAAACCTTTTAAAAAATGTACCCAGTCTTGTAACTGAAATATCTTATAGATAGTAAAGGATGAATTTTGTGTTTTTTGTTAAACAGTAATAAAATATG-----TAACTG-TAGCTCCTTG----ATTTTGTAT--------AATTTATCTT-----------TGAGAATAGGAGAACTAAAACCACTTTGGCAGAATGATCAGTGTAACCAAAGGTAAGTTACCTATAGAATAAAAGCTCAAGTACATTGTTATTAAGAACTGATATGTATTTTAGCTCAGAAGGAAA-AAATTTAGAACATTTTTTTCATGAAAACAGTTTCTTGAGCTAAGAAACTTGCTTATTTTCAGTTTCTTTTAAGATCATTCGGACCTTTTTAAAAATTTCCCCTCTGTATTTAGGTGAAATGTAGAACTGATGTCATCAATTAAATCATGTGGAATCCTACATTTTTCTGCCTAAATAAAACTATTGAT a score=43257 s mm7.chr9_random 9410355 970 + 9745104 ATGGTGAGCCACCTTCTTTAACATCAACCTCCCTCGCCCACTCTTTACATATGGCAGACCACCCACC-GCCACA--------------TGACGTCACTAAAAACAGGC--CACATAGGTTTCATCAAGTTCAAGTCACAAAGCTGGCT-TTACTTTTGTAGCTCGTAGCTCAGGGCATGAGGAGGGTGGGCACTTGGCTTCGGGAACTGTGTGTACCCAAGCCAAGCACCCTCAGCTTGCTTTTAAAAGGTTTGACCTGCTTCTGGGAAAGCTCTGAACACCAGGCTCCTTTCTACTGTGGGTGGCAGCTGGAGCTAAAGCCCCAATAACTCAGACAAATGTGGCCGACGCCAGAGAGGAGTCAAGGGCCTGGCTGCGGCGTCTGGGGCCAGCTCCGTCTTGGACCTCACTGTATGTTTACAAGTTTCCCTGTGACAATTCAGTTTTGAAGATGGGCTTCATTAAAGGGCAATTATAGGTTAAGTGACTTGCTGGCTCGCTGCCTAATGTGGAAAGCTTGACTGTGACAATCAGATAATTCTGAGATTAAGCAACGACACGGCGATTGCTACTGAAAGCAGCAGCTT---AAGAGAGTGGAAGACGCTCCCCAGCCATGACCTCATCCTAGGAGCACCGTCTGGGCAGGAAGTCTACACTCATGGGGCCAGCAGACTCTAGGGACCTCCAGCGCTG-GGGTGACCTCTTCTGGGAAAGGGGACTGGGAAAGGCAAAGGGCTCTCTGTTCAGAATGCTGAGATGTCCCTC--CGTGTTGGACTCATTGCTTCTGGAGGCTCCTC-CTGGGTACCAGGAACCAGCGTTTCTTATCTGTGCTGTGACCTCCATCTTTCCCTCTTTCTTGTCA-ACATATC----ATCTTTTCTAATGTCATCAC-------------AGTTGT------------------CTATCTGTAAAGCTCCCTGGCCTGCAAGGTAATG-ACACTGCCCATTTCCTGGAGCAATGGGTATT--ATAGGAAGCTTGCTTTTGTGTGTGAGAA s bosTau2.scaffold1476 117981 1025 - 238849 ATGAAAAGCACTTCTCTCTGATGCCAGCCTCCCTCGCCGACTCTCTCTACCACAAGGACCTTTCACCAGCTGCACTTCTACCATTGTGTGGGTTCATCCAAGACAGACATCGCATAGGTTTTGTGAAGTTCAAGTCAAGAAGTCAGCCATGACTCTCACCTCTCTTAACTCTGGG---GAGAAGGG--GGCATTCGGCCAAGGTGAATGTGTGCACCCAAACCAAGCCCCCTAAGCCTGCTTGTAAAAACCCTGACCTGCTCTGGCAACTGTTGCAAGCACCAGATTCCTCTCCATTCTGGGTGGCAGCAGGCGATAAAGCCCCTAGAACTCAGACAAATGTGGCTGACGCCAGAGAGGAGTCAAGGGCCTGGCTGCGACGTCTGGGGCCAGCTCGGTCTTGGACCTCGCTGTGTGTTTACAAGTTTCTCTTTGACAATTCAGTTTTGAAGACGGGCTTCATTAAAGGGCAATTATAGGTTAAGTAACTTGTTGGCTTCCTGCCTAATGTGAAAAACTCGACTGTGACAATCAGATAATTTTGAGATTAAGCA---AGACAGCAATTGCTACTGAAAGAAGAAGCTTAGCAAGAGGATAAAAGACTCTCCCCAGCGATGACCTCATCCCAGCTGCCCCATCTGGGCAAGAAGTCTGAATCCAAGGAACCAGCAGGCTCTGGGAACCTTTGGCATTGAGGGTGACCTCTTCTGGGAAACGGGATTGCAGAAGGCAAAGCGCTTTCCCATCTGGGTGGCAGCATGCCCCCCTTCCTCCCAGGCTCAACTCTTCTAGAGGCTTCTCACTGGGTCCTTAGGCCTCGC-CTTCTGGTCTCTGCCATGACCTCTGTACCTTACTCTTCCCCATCACACATTTCTGCTATATCGTCCAGTGTCCCAACTATATACCTAGAAGGCTGTCTCCTCCCACTTTTCTTACTATCTGTGTAGCTTCCTGACCCAGAAAGGATGGCACACTTCAAAATTCCTAGCACACTTTGTATCAAATAGGAAACTTTCTATCATATGTCAAaa a score=5309 s mm7.chr9_random 9625766 267 + 9745104 TTCATAGAGCTCCTGCCTCAC-ACCTTATTTAAAGACATGGGTA----TTCTTTCTTGCATAGAAGTTAAGTATGTTTATTCATGAAGAGAAGAGAAGGAAAGGCACTCATGAAGTTCTCTCACCCAAGGGAGTTCACTGAGAACAGT---GGGTGTTTAGTTCTGCAGGCACCCTT-------CCTATACAGATAGTATTTG-TAGGAAAATGCAAGGGAC-CTGGCAGGTGGAAAGAAGCTGCCAGGCTT------GAAAGATGCCTCTTCTTT----------GGTTCTTTCTTTTT s bosTau2.chr10 57876206 286 - 70001009 TTTATGGAGAATGTGGTTCACCACCATATTTAAATGCATGGGTAATCTTTCTTTCTTGCATAAAAACTAATTATGTTTGTT--------GAGGAAAAGAAAAAGAACTTGTGA----TTCTCATCCAGAGAAAACCACTAATAGCATTTTGGTGCATATTATTGTTTAGATTTTCTTTTCATAATTTATAAAAATAGTGTATACTTGGGAAATGCAGCCAGCACAGACAGGTG--ATGCACCTGCCAGATTTTTTTAAAAACTACGTCTTTACTTTCTATCCATTGgcttctttcttcct a score=97238 s mm7.chr9_random 9626341 2454 + 9745104 CCTCTGACCTGAAAGGAAGCGTGTGCAGAGCCTAGAGGTAGCTGGAAAAGGAGAGAGACCCTGAGGAAACCTCA----------TCTTTCCTAACTGCCCTACCCCTTCCAACTCACCCCCAGGAGCTG---TGGAAGTCCAGGTCTCTGAAGACCCCGTGGTGGCCCTGGTGGACACGGATGCCACCCTACGCTGCTCCTTTTCCCCAGAGCCTGGCTTCAGTCTGGCACAGCTCAACCTCATCTGGCAGCTGACAGACACCAAACAGCTGGTGCACAGCTTCACGGAGGGCCGGGACCAAGGCAGTGCCTACTCCAACCGCACAGCGCTCTTCCCTGACCTGTTGGTGCAAGGCAATGCGTCCTTGAGGCTGCAGCGCGTCCGAGTAACCGACGAGGGCAGCTACACCTGCTTTGTGAGCATCCAGGACTTTGACAGCGCTGCTGTTAGCCTGCAGGTGGCCGGTGAG---CGTGGAGAGGGGTACCCTCTGCTTC-CACTCTTTATCCTTCTGCATGTGGCCTCTCACACGCTGCTGTACCACAGATGAGCCT-GCGCTAACAGCCT-GTGCGC------CTTCCACTATCTCCTGCACTGATGCTGTTGGTGATGATCCCTGTCCTCTGCC------ACCCTCCAGCCTTCTACTCAAAGCCCAGCATGACTCGGGAGCCCAACAA----------CCTGGGGACAAGGTGAC-ATCATATGTACCAGCTCCCGGGGCTGCCCAGAGGC--------TGCGGCAGG-----------GCTCAGCAGCCTGGCCTTGTGACGGAATCTTAGGTGGCCAAGGAGCAAGGCTTGTTTGATGTGCACAGCATGCTTAGGGTGGTCCAGAATGCTAATGGCACCTTCAGATGCCTGGGACTCAACTTGGTGTTACAGTAGGAT-----------------CATCACAATCCACAGAAGCCCCACGGGCTTTTAGTTTTTGGTTTTAAGTGGCACCTTAAAGGGGAGTAACTTAAAGGGGAGT------AATTTAAAG-GGTTATAGCGTTTATCAGTCACACTTGAAGTTAAAGGAAGTTAGTTCCTTATCTCCAGTCTCCCAACA-AGTGAGATGCTTGATTGTGATAGGAT-----GGT------GGGGGAGGGCTCTCCA-------GGTAGCGAGGAGCCACTGATCGAAGGCCTTCT--------TGACTCCCCAGACTCCAAGGCCGTAGAGACCTCCTGGAAGGATGGAGCTGCATCTGGGTC-----AGCAGGTCACGC-ACAGGAGAGGGAAAGGAGTTCTGCGGGGAAGGGG---TTTGCTCTTGCGGGACTCTCGATGATCCTATCACCCCAAGTCTGGATCCC---AGAGATGGCTCTTGTCAG-TCAAGAGCAGCCTGCTATGA----------AAAATCAGATA---------------TGAGACTCAATCTGTCTC----------GAGAGAATG---AGAGGGAAGAAGTCCTGGGTTTTGATGGAGGAA------GAGGCTGTGGAACGGCTGC--AGAGGTCCTATTCCTCCTTAATGCTTGGTCTCTGTGATTCTGAC-TCAGGAGGCATGGAGGTCCAGGT--CTGAAGACCCTGGGGTATCCCTGATGGGCAGTGACACCACCCTATGCTGCTCTCCCCCTCTAACCCCACCCCACCCCCACCCTCGAGCCTGGCTTCAGCCTGGCCCATTTTAATCTCATCTGGCAACT--CAGACACCAAATAGTTGGTGTGCAGCTTCCCTGGGGGCTGGGTCCAGGGCAG-GCCTATCCCAGCAGCACAGCATTCTTCCC-----CGCTGGCACAGGGCAGTGTGTTCTTGAGGGTTCCGTGCATGGATGTAGCTGATGAGGGCAGCTTCCCCTGCTTTGTGGGCATCCGGAACTTTCGCAATGCTGCTGCCAGCCTGCAGGTGGCAGCTGAG--TCACAGGCGGGAGCATTCCCCACTCCTTGTCCCCTGCATGCAGCCCGTCCCCTGTCCCACTGCTCAT--ACCACCATCAAAGAAAGCCCCAGAGCTGGCTCCTGACC-CTCAGCCTCTTGTGTCCTT--CCTCCATTGGATTCCCCTGTGCTGACTGT-------CATCGCTCTCTGCCCTCTGCCACCCTCCAGCCCCCTACTCGAAGCCCAGCATGACCCTGGAGCCCAACAAGGACCTACGTCCAGGGAACATGGTGACCATCACGTGCTCTAGCTACCAGGGCTATCCGGAGGCCGAGGTGTTCTGGAAGGATGGACAGGGAGTGCCCTTGACTGGCAATGTGACCACATCCCAGATGGCCAACGAGCGGGGCTTGTTCGATGTTCACAGCGTGCTGAGGGTGGTGCTGGGTGCTAACGGCACCTACAGCTGCCTGGTACGCAACCCGGTGTTGCAGCAAGATGCTCACGGCTCAGTCACCATCACAGGTAAGGGGAGCCTGTGAGCTGAGGAAGAGCTGAGGGAGCAGCTACCTCTCCTCTAGGCCCT-AACTGGAATATCAATGTAAAAGTACTGGTGGTCA----------------------------TATAGATTTCAGATATTCCAAAGCCTCCCCAGTGAGGAGTCTTTAAGGGACTTGTTTTCTTGAGCTG-ATAAATCTTTTGTCACATTTGCTTTCC s bosTau2.chr10 57877071 2585 - 70001009 cctcagcccttaAAAAAGCAGTGGACAGGGCCTGAAGTTAACTTGGAAGGG-GAGGGGAACTAGGGAGGTCACAAGTGTCTCACCCTCTTCTCACCGTCCCACCTCACCAACCCCACCCTCAGGGGCCGCGGTGGAAGTTCAGGTTCCGGAAGACCCCGTGGTGGCCCTCGTGGGCACCGACGCCACCCTACGCTGCTCCTTCTCGACCGAGCCCGGCTTCAGCCTGGCACAGCTCAACCTCATCTGGCAGCTGACAGACACCAAACAGCTGGTGCACAGCTTCGCCGAGGGCCGCGACCAGGGCAGCGCCTATGCCAACCGCACAGCGCTCTTCCCAGACCTGCTGGCTCAGGGCAATGCGTCCCTGAGGCTACAGCGCGTGCGCGTGGCTGATGAGGGCAGCTTCACCTGCTTCGTGAGAATCCAGGACTTCGGCAGCGCCACGGTCAGCCTGCAGGTGGCAGGTGAGAGCCGCGGAAGGGGGCGCCCTCCCCTTGGCACGCCCC-TCCTACTTCCTGCAGCCCTTTACCCACTGCC---CCAGTGCTGACCCTTGTCTTCACAGCCCCGGGCGCTCTTTCCCTCCACTGTGTCC--CACTGCCCTTGCCTTACCTGACCTCTGCCCTCTACCTCTGCTCCCCTCCAGCCCGCTACTCAAAACCCAGCATGACCCTGGAGCCCAACAAGGACCTGAGGCCTGGGGACACGGTGACCATCACGTGCTCCAGCTACCGGGGCTACCCCAAGGCCGAAGTGTTGTGGCAGGATGGGCAGGGTGCGCCCTTGACCGGCAACGTGACCACGTCGCAGATGGCCAACGAACAGGGCTTGTTCGACGTGCACAGTGTGCTGAGGGTGGTGCTGGGCGCTAATGGTACCTACAGCTGCCTGGTGCGCAACCCCGTGCTGCAGCAGGACGCCCACGGCTCGGTCACCATCACGCCCCATAGAAGCCCCACAGGTTTTTCTTTTGTTTTCTTAAATGTC-CCTTGGGGTGGGGGACAGGGGCGGGGAGTTGGTCCAATCTCCAGTGGTCATAGTATCT-----------------------GAATCTAGCTCCTTACCTTCAGTCTCCCAGAACAGTGAGACACCGAATAATAATAACAGAAACAGGTTGCATAGAGGGAAAGCTTACTGTGGCAGGAGTAG-GTGAGGGTGATGATCACAGGTCCTCTCAGCTCTCTGGGTCTCCTGACTCCAGGGCTCTGGAAACCGGTGGAAAGAGTGGAGAAGCATTCAGATCTCAGAAGAGAGTCGGAAGATAGGAGAGGGAAATGGGTCCTGGCGGAGAGGAGAGTTTTGCTAGAGCTGCAGGCT-------------GCCCCAGGCCAGGTCCCCCAGGGAGATGGACCTTGTCAGGCCAAGGCCAAGCTGTTGTGATTCTTGTCAGACGATTAGGGACACGTCTGGAAGTGCTGAGACTCAATCTGTTTTTAGGTCTGGGGAGAAAATGGGAAGATGGCATGGGACCTGGGGGTCGATGGAGGAGATATGGGAGGCAGTGTGGTGGTAGCCAAGTGTCCCCACCCCTCCTCACTGCCGTGCCGCTCCAACCTCGCCCTCAGGTGCAGTGGAAGTCCAGGTTCCGGAAGACCCTGTGGTGGCCCTCGTGGGCACCGACGCCACCCTACGCTGCTC--CTTCTCGA--------------------CCGAGCCCGGCTTCAGCCTGGCACAGCTCAACCTCATCTGGCAGCTGACAGACACCAAACAGCTGGTGCACAGCTTCGCCGAGGGCCGCGACCAGGGCAGCGCCTATGCCAACCGCACAGCGCTCTTCCCAGACCTGCTGGCTCAGGGCAACGCGTCCCTGAGGCTACAGCGCGTGCGCGTGGCTGATGAGGGCAGCTTCACCTGCTTCGTGAGCATCCGGGACTTCGGCAGCGCCGCGGTCAGCCTGCAGGTGGCAGGTGAGAGCCGCGGAAGGGGGCG---CCCTCCCCTTGGCAC---------GCCCCTCCTACTTCCTGCAGCCCTTTACCCACT----------GCCCCAGTGCTGACCCTTGTCTTCACAGCCCCGGGCGCTCTTTCCCTCCACTGTGTCCCACTGCCCTTGCCTTACCTGACCTCTGCCCTCTACCCTCTGCTCCCCTCCAGCCCCCTACTCAAAACCCAGCATGACCCTGGAGCCCAACAAGGACCTGAGGCCTGGGGACACGGTGACCATCACGTGCTCCAGCTACCGGGGCTACCCCGAGGCCGAAGTGTTGTGGCAGGATGGGCAGGGTGCGCCCTTGACCGGCAACGTGACCACGTCGCAGATGGCCAACGAACAGGGCTTGTTCGACGTGCACAGTGTGCTGAGGGTGGTGCTGGGCGCTAATGGTACCTACAGCTGCCTGGTGCGCAACCCCGTGCTGCAGCAGGACGCCCACGGCTCGGTCACCATCACAGGTAGGGGCCGACGAGCAGCTGGGGAAGGATAGAAGGAACCATCGCTTTTTATATAGACTCTGAGCCAGAATTCAGAT----AGGCTTGGGTGGTCAGGAAACTTAAGaattttttttttttttttttaCATTTCACGTGTCTCAAATTCTCCCC--CAAGCAGTCCTTAAGGGACTTGCTATATTGCGCAATAAGAATCATTTGTAGTATTTGCCCTCC a score=8145 s mm7.chr9_random 9628809 913 + 9745104 TCTTACTTGGACC------ACAAAGTACTTTCCTGGAATCTAGAGGG----TAGGTGGGA-TTCTGGGGCAGACACAGGCTTGCTCAGAGACCTGCTGAGTGAGGATGTGTTTTCCAATGGGCACGTCTTT-GGTGTGGAAAAAA------------AAAGTCTATTG----------TCCAACTGTGAAACCCCAGGAG----------CCTTGAAGGTG------CATCTCACTC---------------------------AACTGGGCCAAG----------------------------------AAGGAA-------------------------------------------------------------------------------AGCACTTCTCCCTGCAGA--------------------CTAGAGTGCTACCATTGC----------ACTAGTCAGA--------------------------------GTTGTCTCTACTGCCCTCATGTGGTCAAATGCTAGATTGAGACTCACACTGGAGGAGTCTCTTAAATCTCTGGTTTCCAGGTCAGCACTAGTTCA---------------------------AGTAGGCACCTTCAGTGCTTGGGGATCTAAAGAGGGTTCAGGCTCACCTTCATGCCAAGGTG-GACAGTCACTCTCTGTGTTTGGCCTTGACATGTCTCTGTTCAGTCCTTTAGTAGATCTGTGTGCTGGGTCTAGCTTCCCAGTGCCTCCCTCTGGGCTGTGTGAGCTTTCCCAGGGTCCTCTCTG---TCTCTGAGATCAGGGTG------TCTGTCA--CTGGTCCTTATCTTTTCTCATCCCATAACTTCTGCCTGGCACCCTCAGCCCACCCAGCTTTCTACTTCCAAGGGTTGCCAGTGTCTGTGTAGACCTTAGGC-TCATTGCGGCTCACCTCTCCTGCTGAGCGTGCT------GGACCTTGTGTGGGTTTCTCTCCTGATGAACTCAGCCAGTGGCCAGCATTCATGCTTATCTCCCAGGAG-TAAGTCTTATTCCTAACTCTTGCTTTTTTAAGG--------------------TGTCACCTAG------ACCTCCCCAAGACTGAACCTACCTTCGCTGTAGAGAGCC--AGTCTATGCAGCCTCTAAGGGAGTCCCTTC-CTCAGCTCTCTCATATTCTGAGGTACCACCTTGATCTTACAG s bosTau2.chr10 57879821 1164 - 70001009 TCTTAGTTGGTACTTGGGGACTGAATACCTGTCTGGAATCTGGAGGTGTTCCAGGAGGGAGTTCTGGAGCAGCCACAAG-----GCATAGCTCTGTC------TGGAGTGCTTTCCTACGGGAACCTCTCCAAGTGCTGAGAAGGTGTTGCTATGTCACCGTCTGTTGCTGGGCGCCATCTAACTGTGAGCCCCTGAGAGACAGCTGGGCCTCTCCAGGTGGTCAGATCCCTCACTCCATCAATGTCAGTTCTCCATGGAATTAAACTGGACCCAGCCAGCCTTTggacttcccgggtagctcaactggtaaagaatccacctgcaaggcaggagacctgggttcgattcctgggttgagaagatcccttggaggagggcatggcaaccgactccagtattccctcctggagaacccccatggacagaggtgcctgacatgctacagtccctggggttgcaaCTAACCACAGCACACAGCACAGGCAGCCTTTGGAATGGCTGGCTCTCTCTGCTGCCCCCATGTGGTCAAACACCAGATCAACGCTGCCCCTTGGGCAATTCCCTCAATCTACAGTTTTGGGCTC----CTAGCCCACACTTCCCTTCCTTTAGTGCCCACCTCAGTGTGTACCCCTTGTGCCTGGAGGTGTGAAGAGGGCTCAGACCTACACTCAGGCCAGGGGGAGGCAGTCTTCATCCTTATTTGGATCTCAT---------------------------------------TCTGGCTCCTCTGTACCTCCCCTTCGGACAGCTAACCTTTCCTAGGGACCCCCCTGCATTCTCTGGGATCAGAACAGCAGGTTCTGTCCATCTGGTTCTCCTGTTTCTT--TCCCATGACTTCCACCTG--ACCTGCGGCCCACAGAA-GACCTGATCCCCCTGATAACCAGTTTCTGTGCAAGCCTCAGGCTTCACTGACTCACTCCTGTCTTCCTGCGCCCCATTTGCAAGGACCTTGCGTGGCCTTCACTTCT----------GCAAGTGTCCA----TCGCATTTGCCTTCTAGGAATTGAGGCTCATTC----CTCCTCCTCTTTCACGGTTTTTCTTCTGGCAAGGCTTTGTCCCTTTGCCCACCCCCTCCCCAAGATTGACTTCACCCTCTTTCTGGAGACCCTAGGCCTGTACTTTCTGTGGGGTAGTTACTGCTCTGGGCTGTTGGATGTCCCATGGGGTCTCCTTGACCTTTTAG a score=19243 s mm7.chr9_random 9630208 644 + 9745104 GAACAGTTGCCCTGCTTCAGAG---AACATT----ACCTCAGTAGATAGCATTGACTGAAAGGGATTTCATTTGGGCTGTTGTCGTCAAGCACAATTCAGACGAGATGGAGGCTCAGGGAAAAGGGACTCTCTCCCAAGACCACAGACCAGCACAGTGGCTCCAAAGGATTTGGGGGCCGGGCCCCACTTTGAAAACT-GACAAGTGCTAAAGGCAGTGGTTTGC-CTGAAGTTTGGCGGGTTCCCAGCTTCTCTAAACTCCATCTGAGGAGCCTTTGGATCCT-TTTGCGGCATTCTGCAGCGAGCAGAGGAGCCAGGATCTGAATCTAGCATTGGCCTCTTAGCCCAGTTT-CTCTCCTCCCCACCGGCTGGCCTCCTGTTTCCATTAGAGCAGAGCTGGCTTACCTTGGAGCCCTTGGCCTGCATTTGGCTGCGGGCAGCTC--TGCCTTGTACAGCATTCTGGGATTTCAGTGCTCAGTCCTCT-GCCTGGTCTCCCTCCACCTGAAGGGAGTTAGTGATGTTGAGTGGCCTGTGCCAGGCATCTCTGGAGAGAGAGGGCTTTCTAGAGCAAACACTGG-------------AAATGTAGGTCTGAGCCCCACTAACTGTGTCCTTGGCCAGGAGGATGAAGGC-AGTCTCACCC-TGCTTTAGGCTCC s bosTau2.chr10 57881483 620 - 70001009 GGACA-TTTCTCCACCTGAGAGAAAAACATTAAAAATTATAGTAGCTGGCAT----TTAAAGTGCGTtcattt-----------------cacaaatgagg-aagctgaaggc-cagagagaagagaa-ctttcccaaggccacagcctagcacggtggcTCTGAC-TCTTTGGGGATTAGCCACCTCTCTGAAAACTGGATACATGATAAATGCAGTCATTTGCATTTAAGTTTTGAGGGCTTGTGGCCCTGCTGTACTCATCCATGGGGGTCTGTGGACCTTGGCTCCAGCATCCTGCAGTGAGCAGATGAACCAGAATCCAACTT-----TTAGCCTCTCAGCCTAATTTCCTCTCCTCCCCACCACCCAGCCTCCTGTTTTTCTGAGAGCAGGTCTGCCCTACTTTGGAGCCCTTGGCCTGTATTTCGCTTTGGGCAGCTTTGTGCCTTGGAAAACGTTCTGGGACTCTGACTTTGAGTCCTCCGGCCTGGTCCCTCTGCACCTGCTGGAGGTT----------AGTTGCATGTGCTGTATGT--------GGAGGGGGCTTTGTGGAGCAAGCCCTGGATGTGGAGTCTGAAGATGCAGGTCTGAGCCCCTCTC----TGTCCTTGGCTGGTGGGATGAAGGCAAGTCAGACCTGTGCTCCAGGTACC a score=15160 s mm7.chr9_random 9633082 448 + 9745104 TCCTAGGTCAGTGAGGCCCTATCCATGGTTATTAGTCA------GCCTCAGGCTTCTTAGCTTCCCCTCTTCCCTTCTGAGGTGAACCCATAGCCA------CAATGGCAGGGTTTGGTGGGGTGAGTAGAGCTGTGACTCTGGGAGCCCTGGCCATGGGAGCCTCAGTGAGCATCATTGACCTTGGTGGCGTAGGAGCT---------TGGGAGCCCC-TGTTCACACCGTAGAACAAGATGGT----------------------------------------CTCATGCTTCTTTCTTCCTCTTCTAGGGCAGCCCCTGACATTCCCCCCTGAGGCTCTGTGGGTAACCGTGGGGCTCTCTGTCTGTCTTGTGGTACTACTGGTGGCCCTGGCTTTCGTGTGCTGGAGAAAGATCAAGCAGAGCTGCGAGGAGGAGAATGCAGGTGAGGGAGAGTGACTCGCgtgtgcgtgcgtgcgtgtgtttgtgtgtatgtgtgtgtgtgtgtg s bosTau2.chr10 57883102 478 - 70001009 TTCCATGTCAGTAGGGAGCCATAGAAGGTTCTTGAGCATCTTGGGCCACAGATT------CTTCAAACCTCCCAGGTTGAGGCCTGCCCATGACAATCCCAGCTGTGTCAGGCTTTGGAGGGTT---------TGTGGATGTGGGGGGAAGGGGCACAGGAGCTTATGTAAGCTCAGTTCA------TGGTGTGGGGGCCCCCTGAAGGTAGGAGCCCCCTGTTCACACTCTGGAGCCGGGGGGTTGTCCTCAGGACCACTGAGGGTCAGGCATGACAGTCTCTCCCCATTCTCCCCACCTCCCCTCCCAGGACAGCCCATGACATTCCCCCCCGAGGCCCTGTGGGTGACCGTGGGGCTCTCCATCTGCCTTGTCGCACTGCTGGTGGCCCTGGCCTTCGTGTGCTGGAGAAAGATCAAACAGAGCTGCGAGGAGGAGAATGCAGGTAAGTGAGAGAGGC-----------GGTGTGCATGTGTCTCCGGGTATGTTGGTGTGTCTATG a score=5719 s mm7.chr9_random 9635390 307 + 9745104 TGCTGGGTTGTGAGTGGGTACAAAGCTGGGTAAGTGGGCCCTTGCCAGG-AAGTGTTGGGTTTCCCGCTGCAGCCC------TCCCATTACATCCTAAGGTTCCGCTCTGGTCTG-------GTCTCAAGCGTCACAAGGTGTGGG--AGTGCTG---GCTGACAGGGCTGTAAAAGCTTGTTATTCACCCTTGTAGGTGCCGAGGACCAGGATGGAGATGGAGAAGGATCCAAGACAGGTGAGTCT-----------GGCTCTCTTAACTGGGGAGGCACCAGGTACAGGAGACAAGATTTCAAGGGTTTGATACACCCTCTGATGGAGGGCCCCA s bosTau2.chr10 57884059 307 - 70001009 TGGTGAGTGGTGGGTGGGTGAG----TGAGTGGATAGTCCTTGGCCAGGTGAGTGGTGGGCTCCTGCCTGGGGTCCCTCTTATCCTGGCACAGGCCAGG--CCTGCTCAGCCCCATCCGCCTGCCTCCTGCACTCCCAGGAGCAGGTCAGTGATGAAGGTGGGTAGGGCTGAGGAAGTTT-CTGTTCCC------AGGAGCCGAGGACCACGATGGGGATGGAGAAGGATCCAAGACGGGTAAGTCTGAACCCAGAGGGACTCTGTTGGCTGAGGACATGCAGGG---ATGGGGCAGGGACCCCAAGGTCTG--------------GAGGGGCCCCA a score=18643 s mm7.chr9_random 9635821 854 + 9745104 AGGGTGAATGCTGAGGTCCTGGTGCCCCATAGCTGCAGGA--------------------CCAGGAGAGACACTGCTGAGAAAGGCAGATATCCAGTGAGTCATCTTGGACTGGTCCAGTTGACAGCAGCTCCCTCCGCACCCCCACAGAAGGAAGGGCAGGAGAC--ATGCCTGGGGACTGCTATAAATCATGCCAATTAATTCGCCACCTGTTGGTGCCTG--TGTGGCCAGCATGGAGAGGGACCTGGGATCAGGCCTCATTTCTCACGCTTAGAGGCAGATG---TTGGCAGG-GGGAGGGAG-GGAGAGAAGAATGGG--CTAGGGAGTCAGTCAGCC--------ACGTGACCCTAGGCCT--CAGGAGGCATCTGTAACCATGCCAGCCTCCCT--GATCCTCATCTCACCACATTTATAGCCTGGGCACTGAGTGCTGCCACATCTCCAGCCAGTTGGATG--TGGGTCCttgtccccattctataggaagggagcctgaggttcagggaggAGAGACATGTGGGACTTATTCAGAGTGGGTGAAGGTGGGACTTGGGAACTAAGGCTTGGCATGGCTCTGGGGCTCCTCCCCTGGTACTTCGATGGTGCCTGGTGCCAAGCTCTGCCCGTCCCTTCTGCATCCCC-------------------------ACCTTACTTCTCCCTTCACCTGCCTCCCTAGGATTCTTCTCTTATCACAAGCTCTGTTTTTGTTTTTGTTTTTTCAGCTCTACGGCCTCTGAAACCCTCTGAAAACAAAGAAGGTAAAGATATATTGCCTGAATGTGTATGTGTGTTTGTGTGTCTGTGTAGGAAGCAGGGTAGTGGGGCAGCCA-TGGTCACCCTTCTGCTGCTGACCTG-TGCTCCCGCTCC-AGAAGAGCAGCATCCGCTCACCC s bosTau2.chr10 57884951 869 - 70001009 AGAGGAGGCGCCAAGGCCCTGGTGCCCCTTGGCCACTGGAGGCCTCACTGCCTTCCCTCCCCAGGGCCCATG-TATTGGGGGAG-CAGGTTCTTGCTGAGCCCTCTGTGATGGTGCCAGTTGACACGGGTTACCCCCCAATCCCTGAAGAAGGAAGGGCAGAAGATTGACCTCTGGGGACTGTTGTAAACTGTGCCAATTCATTCTCTGCCT-TTGGTGTCCGGGTGTGGCAGGTATAGACACAG-CCTGGGATCAGGCCTCATTTTTCTTGTTCAGAGGCAGGTGCAGTTGGCAGAAGGGAGGGAGTGGGGAGAAGAGGGGGGCTTAGAGACACGCTTAGTCTCAGTTCTGCAAGATCTTGGGCCTAGCTGGCGACACCTG---------CAGCCTCCCTTAGCCCCTCTCTTAACCCTATTTGTAGAGCAGGCTCAGGGTACTCTCACATCCCTCACTCACAGGAGGGCTGGGAAATTGTTCCCATTATAGAGGTTCAGAAAACAGGCCTGGGGGAGGAGTGACAAGTCATA------------GAGCAGAACGGGAACCTGGGGCAGCAG-------------CTGAGACCCCTTTTCTAGTGCTGTGATGTTTCCCGCGCCC--TCTCAACTTCTCCCTCCTGCCTCCTCCTCCCAGGCCTTCCCAGTCTTCTAGACTTTATTTCTTCCTTACCACCACTTTCCACAGTTCCCCCTTCA-------CTGTGTTCTTCCTTTT----TTGCAGCCCTGCGGCCCCTGAAACACTCTGAAAACAAAGAAGGTAAAGACGTGGTGTTTG--TGCATCTGTGTGTGTGCCCTTGTGTGTAGGAGGCTGG-----GGGCTGGTCATTGGTGATGGGGTTGCTGCTGCCCCGAGGCTCCCTCCCCTAGAAGGACAGCCTCGACTCCTCC a score=6863 s mm7.chr9_random 9636726 287 + 9745104 GATAGTCTTAAAGCTGCGGGTAGCCTAGG--------------GCCTGGATTCTGTTCCCTGCAATATGAAGCTCTCAGC-CTGGGTCTAAGGGGTTGCTGTGGCTGCCATGTCCCCCTCCAgaggcaagggatgagaaggag-ggcagggaaca--tctttctagggcttggccaagaatagctcctgtcactttagatacatcccattgggcagaacctagtcatgtgacctgtttttccaggtgaggcta-gaaatgtagttttcatctgg-----------------------------------------------------------------gcagtcacgtTTCTGGTGCATAGGAGGGGGCT s bosTau2.chr10 57885912 358 - 70001009 GATTGTCTTAAGGCCACTGGTACCCTggaaccagcttcctcctacctggcttctgccttcttctactcaaagcttacattgccaggtccaggtggctgctccagctcccaca-ccccctccagaacgaagagggaaagaggagagggaggggacatttttttctagggcttgactagaaatagctcctgtcactcctgtttatatccatttgtcaaaacctagtcacgtga-ctgcaact-caagtgaggctaggaaatggggttttcaGCTGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCATAACATCAGCAGTTACAT----------TAGGAAGTGGTT a score=13102 s mm7.chr9_random 9637361 1191 + 9745104 GAGGCAGTCAGGGGGAAAGGGCTTCCTGCAGGGTGATTCTTCAGGTCATTACAATGGAAAGGAGCGCCGGGCC-AGAGGAGGGAATTGGGCCAGGC--CTTGA---AGGGTGAGTCAGATGGACCAAGCAGGCCATACTGG--------CTCCTGTGTACATACAATGTAGCAGTGTAAGGAGACACACTCCTTAGCGCTACCTATCCTGCACACACCTAAC--AGCCTCCAGGATAGTGGTCACGGTGCACACTCCCAGTTGGGCATGTGA----CTTCTGATGTACCACC-------------------------------AGGAGCAGAACTTCTAGCTTCTAATGCATTTCTCCCCCTTTTCCTTTTATCCCACCATGAAATGCAGATGACGGACAAGAAATTGCTTGATT----------GGGAGCTGCTGCCCTTCCCAGGTGGGGGGCCCACCCTCTGGCAGTGTT-GAGCTTCAATGCGAG-----------------CCCTTCCCCCAACGAATGGGTTTGTCCC--ACAGATCTACCCGTTCGTCAAAGGACGTGGTCCATAGACCACCC-ACAGCCTTACTTTTCCAATGGACTTAATTCCC--ATCATCCTGCAGCCTCATTTCTCCAGTGACACGATACACGAACCATCCTGCGGCCTTATTTCCCACGGACACGACACAAAGATGTCCCT-CCTCGGTGTTCCTCCAGAGTCGTCTGGTGGCCTTGTGATACGGCGTGAACCTTCTTCCTTCTGCCTTACGTCTAATGGACACACACGCACCACCCCCACACCCTTGCTCCTCCAAAGCCATGCAGACTGTGTAACTGCTATTATTCTCCAAGGGGCATCCTGTGCAGATGAAACCCTGCTTTATTTCCCTGAAGACAGCTGCACAGTGACCTCTTAGTTCTTGCTCCCATGGCCCTGATGTATCCTAGTTACCAGCCCTCAACCTCAGTTCTGA---GGGTGGGATCCCATCG-CTCAGCAAGG----CTTCATCCTGA------CCTCC------------CTGCCCTGATCTGATCTGGCCCTGGCTTTTGTTGTCTCGCTCCCTGACTAAGTGAG-ATGGGGCACTCTCCCGCCCCCGCCCCCCCCAGGTCACAGATACCTACCTGCAGCTGTGCGTGCTGGATCACGCACATACTT------GCCTTGCATGGTCTCCTGGCTGCCCTGGGCTGTG---------------------CCTGTTCT-TCCATAGGAAGCAAGTTCTTGTCTCCCTGGTTCT-----------CAGGGCCCCTCAGGGGCTCAGCCTTCAGCCCTGTGCTTCCCC s bosTau2.chr10 57886599 1127 - 70001009 GGGACAGACAGGGTGGGGGG-----CAGCATGGGG-----------------AAGGGAAGAGTGTGCCAGACCAAGAGAAGGGAAGGGTGCAAGGTGGCTGGATCCAGGGGGATTGAGAGAAGCCGGCGAGG----ACTGGGCAGTCTCCTCCTG-GCACCCTCATAGT--CAGTCTGATG----------CCCGGC--------TGCTGTGTGTGTCTATCTGAGCCTTGAGGGCAGTGCTTGCTGTGGGGGTTGCCAGTCAGAC-TGTCAGCCCCCTCACACATACTCCCCCCACCCCCCGAGTATGTGACCACATCCCTGGGGATCCGACATTCCCGCATTTAACGC----TCCCCCCTCTTTTTTCCTTCCCGTCATGAAATGTAGATGATGGACCAGAAATAGTCTGACCGCGAGGCTCAGGGAGCTGCTGCCCCTGCCC--TGGGGCTCCCA-CCTCTGGCTGCACTGGAGCCTCAGTATGAGCTCTGGGCTGGGGGCTTCCCTGCCTCCAACAGATGGCGTCCACTCGAGCGGATCTCCTCATTCTGCAAAGGACACGATACACAGACCACCCTGCAGCCTTACTTCTCTGATGGACACGATTCCCGAGTCATCCTGCTGCCTTATTTCTCCAGTGACACGATACCTAAATCATCTCGCCG-CTTATTCCTCACGGACGCAATGCACAGACCTCCCTGCCGCCATATTTCCCC----------------------------------------------------------AATGGATAT----------------------------------GCTACACGGACCATCTGGCTGCCATTTTTCTCCAA--------------AGATG--------------------------TGGTACACAGTCTCCCCTC-GCCTTGTCTCCGATGGTCCAGA--TACGCTAGCTATCACTTCTCAGCCTTCTCCCCCATCTGTCCGTAACTCTGTCTCCTCAGCAGAGGCCACTGCAGCCTTAGTATTTCCTCCAGACTAGAGGCGTCGCCTCG---TGCTCTGGCCCCAAAGTCAGCCTCTTCCCTCCTCCATTAAGTGAATACAGGGCC--------------CCTCCCCCAGGC-----ATGCATTCAAGCAGGTGCACGTGCTGGAACACGTGAGGACCTCCCCCGGCCCTGCCT--CTGCCGGGGCGCCCCGGGCTGTGCCCTGTGAGCCCCACCCTCCACCCGCCCTCCCCACGGGAAGGACGTGCTGGTCACACCAGGTCTGTGGGCGGCTGCATGGGCCCCCTTGTGATCTGCTGCTGTCCCTCTGCTTTTCC a score=9757 s mm7.chr9_random 9639096 901 + 9745104 GGCGTGAGCATGGTGCTGGGTACTAGGG-TCCTGCTGGAAAATCAGAGACCTTACCTA--------------CAGCTGGGA----------------------CATGA----------CCTTGCTTCCGACTTACCCACCACTTCTGGA---------------TACCTCACCCTCAGCCCACACT-ATCCCTGGCCTAGGGCCCAGGGTAGAGCCAGAAACATGGAGAAAGCATGGCCCCTTGCCGTACCTGGAGAACTGGGTATTTTCCAGAGT--CTTTATAGATGTGGACTG-GAAGGCAGGTGGCCACAGCCGTGCAGACCTGGGTCAGGTCAGAAACCTATGCCATGCTGGGACCTACTCAACAGCAGAAGCATGAAGAGGGCCTGAGGACAAGAAAGGCCTT---CTTACCATGGTGCTATTCTGGAGCTGGG---ATATATACCTGGCTTGTCTCTGACTG--CCCTGGCTTCTGGCAGA----ACTTCTGA--------TGTCCTCCTGAAGGCCTCTCTCCCACC-CCAGTACCTGAGAACCTGAGGAT----AATTTAAACATGGGACTCTGGccagcacctgggagagacaggtagatctctgatttttgactcagcctggtctatcgagtgagttccaggacatctggggctacacagagaaaccatcttaaagactaaaaATAATAAACATGAGACTGTAAACTGGGTGTATTTTGGGAGAAATAAATGTCTTTTTCTTTCAATAGCCTCTGGCCTGTGATGCCTGTGAAACAGTGGGGTGGCCTGGTGCTAGAA-GGAAGGAATCTGTCCTGGGCACTT-CCTCCTGGGGAAGGGTTACCTAGCTCTCCATAG--CCCAGTGTCC-----TCCTTAGGTTCC--TGGCTGCATTTCTGTCTTAG-----------GAAAGTAAAGTTGGTTGACC--AAAATCAGGTTCCTTTGCCA------GTGACTCCTCTCACTGATGTGCATGTCACTTGATTTCTTTTTTt s bosTau2.chr10 57887767 841 - 70001009 ggcgtcagcactgtgttaggtactggggaccctgcgtgagaagacaagcccctccctaaggagcgcgcccttcagccgagaaACCCGTGAGGCAAGAGGGACTCGTGAGGGGCTCCTGCCATGCTTCCTGCTGAACC-CCTCTTCTGGACCACAGTTCCCAGGATACCTCACTCCCATCCCACCCGGAATCCTTGCTCAGAGACCTGGAAAGAG---------------AGACAGAGCCTCTTGCCACAACTGGAGCATCTGATGGTTTCCAAAGTGTCTTTCCAGGCATGCACAGCGGGGACAGGCAGCCCAGACCCGACCGACCTGGG--------------------GAGCTGAGAGCTGC-----------AGCGCAGGGGAAGCCTGAGGGCAGGGACAGCCCCTCCCCCACCATGGTGCTATTCCGGAGCTGGGCAGACA-ATTTCTGGCATGTCTCCGGCCAGTCCCCAGCCTCCAGTGGAGTAAACTTCTGAGGACCTGATGTCCTCCTGTTGACATCCCTCCCTTCACCAGGAATGAAAGATGTGGGGGTTTCTAATTTAAATGTGGGACTCTG-------------AGAAA----------------TTTTG--TTAACCGGG--------------------------------------------------------------------------------------GGTGCATTTTGGGAAAAATAAATGCCTT----TGTAGAAAGCTTTTTCTCTGT----------AAATTGTGTGGCAGC--AGGGCTCGACTGGAAGAATTCCCTCCTGGACGTTTGAGGCCCAGAGTAGGGGTGCTTGGATCTCCTTAACTCTCACCGTCCTTAAGTCCCTGGGTTTCCATGGCCCTTTTTCTAACTTCATTTACCCACTTGATAAGGATGCTGGCTGTCCAGAAAGCCAAGTCCTTTGGTCACTGTATGGGGCTCCACCCACTCTTAGAAGTGTCGCCTAATATCTTTATCT a score=5125 s mm7.chr9_random 9641712 204 + 9745104 TCACCTTCCTCGAG----GAAGTCTTAGAGG--GTAGTGAGCTTGGTGGACAAACTAGTTTATAGAGAACCAGATTCAGGGATGGGGGAGCCTGCAAAATGTTCTGTGTGCTTTTTCCTTGGGGGA--ATAGCTTCAGAATTTGGCC-TTAGTCAG-------ACTATGGCTGGCCTTGAACAGGAAGTTGAGCTGTGCTGTGGTGGGGCTCAGGCTGCT s bosTau2.chr10 57888994 212 - 70001009 TCACCTTCC---AGTTTTGAAGACTAAGAAGAAGAGGTGAACATGGCAAGCAAACCA-TTTCCAGAGAACCAGGTTCAAGGATGTGGGAGCCTGCAAAGTGCACTGGGCTCCTTTACCCTTGGGGGCCAGGGTCTCAGAACTGGCCCACCAGTCAGTCCCCAAACTCTGCGGGCCCTAGGGCAGCAGGAAGAGCT----CGGGCTGGAGGTCAAGACACT a score=27942 s mm7.chr9_random 9642304 900 + 9745104 TGGTGCACTGGGTGGGTTTTGGAATTCAAAAGCACCGTCTCCCCCTCCCACATAGTCAGTGCCTTGTGCACGCTGTTCTCCTTTATAT-----------ACCTCAGTCCCCACCAGGGATTGGAAA----------------------GCTTCAAAGGTTTCTTGTGAGAATCAAACAAGGCTAATAGGGAAAACAGGTAG---------GGGTGCCGG-------TGA-GGCTAAGGCTTCCCGCCCTGCAGCCAA--TGCAACATTGTTGCTGTTTTGATGATTCTGTAGATTGTGCA--GTGACCCTAGGCCAGCAGTCTGCACCT--GTCTTCCCATCTGTAGAAGAG----AGACACCTG-GTGTCTTGTCTTCCAGTCAGG-TTGAGGTAAGGATCAGACATGACAAT--ATCCAGTGCTTGAGA-AGAGACCCAGCAGGTGTGGGACTGGCCTGGAAGCTGAAGGGTGAGGAAAAGTGGCCAC-CATGTCCCCTGATGACAAGTGCCTT-AGAGAGCAGTATTTTTAGCTGCCCTTCCTGGGCAAAGCTCCAATTCCTGCATTTTAATGGAGAAATAATTCTCACAGTGCGACAAGCTGTAGCCTGCAGGTGTCACATTCATATTGAAGAGAGGACAGAGCAAGGGTTCATTTGCCTGGTTGGAGGTGTGACCGGAATTCGCCCCTACCACCATTTGTAACCTGGCCTGTGAAGACCAATTAGTGGACCTGGCCACTCAGTCATTCATGGGGAGGGAACAGGA----AGGGTAAGGATGGTATGGCCGGAGTTCTGAGTCCCCCTGCCTCT-----CCTAATGACTT--GTTACAGATGGTCTGCTTGCATGTAGAG--------TTGAATGATGGGGAGGAGTGGGGGTGGGGGAGGGGTACCTGCAGCACCTGGCCTTGTTCAGTTCCAGGATGTGGATACTGAATGGGAAGCCTATACCTGTGAGCCAATGAGCAG s bosTau2.chr10 57889595 937 - 70001009 tggtgctgtgggtaggttttaga-ttcaaaaac---------ctttcccg---aggctctgtctcttgccccttgtctccccctacaccctggagcgtgacctca--cctcaccaggcgtcaaccacaccagtacaatagtagttcatgttttgtaggattgctgtgagggttggacaa----cataggaagaagacactacaaactataaagtgctgggcacaCATGATGGCTTATCTTTCCCTCCCTGCAGTCGGGTTGCA-CACACTTGCTCCCTCGGTGATTTTGTAGATGGAGCACAgcgacccagggcaagttgtctaaacctcagtttgcccatcagtaaaacaggCCCAGAAACTGGTGTGTTTTTTCTTTCGGACAGGGCTGGGAGATGGCTCAAACACGATGCTGAATCAGATGCTTAAGGGAGGGACCCAGCAGGTGTGGGACTTCCCTAGGGGCTGCAGGGTGAGGAAG-GTGGCCATTCACACCCCCCAGTAGCTGGTGCCCCCAGAGAGCAGTATTTTTAGCTGCTCTTCCTGGGCAAAGCTCCAACTCCTGCATTTTAATGGAGAAATAATTCTCACAGTGCGACAAGCTGTAGCCTGCAGGTGTCACATCCATATTAAAGAGGGGACAGAGC-AGGGTTCATTTTCTTGGCTTGAGGTGTGACCGGAATTCACCTCCAGGACCATTTGTAACCAAGGCCATGAAGACCCATTAGTGGCACTGACCGTTCAG--------GAGGAGGAGCCTGGATGTTGGGCTACAAACAGAATGGCTGACGGGCCGAGTCACCCTGCCTTTCTCTCCCTGCTCTCTTCCTCTTCAGAGCGTTCTCTCACAAGCACGGACAGTGCCTTCCATGGTG---------TCTGTTCAGGCAGAGGCACTTG----ACCTGGCTT------ATCCCAGGAGGCGGTTGCCTAGTGGGATGCTGGTATGTGTGGACCAAGGAACAG a score=2807 s mm7.chr9_random 9643564 138 + 9745104 TATGAGGAACACTGGA------AGGCACAGATGCAAATG---CAGAGAGGTAGAGATGGTCTGTCCT-GCCACTGTCCCTGTCCACTCAG-----------ACAAAGGGTTTGCTTTTCTTCCAGACTCTTCTCCAGG-TGGCATAGTTATAAGATGGCA s bosTau2.chr10 57891005 159 - 70001009 TATGAGGGACAGAGGATTCAAACACCACAAATGCAAATAATACAGAAATGTAGAAACTGGTTGTCTTCACCTCCAATCCCCTC-ACTCGGGGGAAAGTACTACTAACAGTTTGTTATCTTTCCAGACTTTTCCCCAGGCTTACTCATTTATAAAAATGAA a score=5166 s mm7.chr9_random 9643731 273 + 9745104 TCCTGACTTTCT-TGCATCACTATTGGATGCATCTAGCATTTAAGTTTTGCTGCTTTTTTTTGGTGTTTGGGTTCatgaatttttacacaagtgtc--------------actgttactttgatcaagatctagaacagcgatggaatcccacaacgttcccttatgtccttccacaggcaatagccccgcccttgggtacca-tctggctgctttctaggtgaattagctctgctt----tttaacctg--ggagctgaatactacagtg-atactattttgtatctaccttctt s bosTau2.chr10 57891229 294 - 70001009 tcttaactttttatgttgagttgtctcatacacctagtgtgtaaa-aaagatgctagtcctcagtgtatggctctgtgaatttttaaagaagtgtttacatcaccatgtaaatatcacccagatccagatacagaacactttcagcat-ccagaaagttccctcctgaccctgcctagtcaatggccccacccagagagactgctctggctgttttcaccatcgatttgttttgcttgttcttgaacttaacataaatggatcctacctcatatactattttgtgcctagcttttt a score=3059 s mm7.chr9_random 9644263 106 + 9745104 GCAAAGACTTCTTTCATTCTTTGTAAGTGGAGTGGTAACACCTCATAGTGC--CTGTTCTAGAGCTGTCTT------GT----CAGTTTGGACACGACTAATACAAGTTTCCACACTA s bosTau2.chr10 57891523 118 - 70001009 GCAGAGACCTCCTTCATTCTTTCTAAATGGCTACATAGTATCTCCTAGCACTGCTATTCTAGAATAGACTTTGGCAGGTTCTACAGTTTGGAGACAAATACTGCAGCCTTGCGCTCCA a score=9971 s mm7.chr9_random 9644608 587 + 9745104 AAATGCTGCTGGAGTTGGCAGCTGTCTGGGCTGCCTTTTTAAGCTGGGCCCATACAAG--------------------------AGGGTCATTAGCAAAATAGATTCTAGAAAGTGCAAGGACAGTATTGAGGATCCAGGCTCCTTCTGGGCTCTCAGGGACTCTCAGGGATGGAGTCCCCGTTGAGCAGTGGCTAGGACTTGTAGCCATTTCTTTCTCATCT-----CTCTGGACT--------CTTCAGCATCT-------------------------CCTTGGGAGCTGTG----TGCAT--TTCTGGGCTCTCAATCCTGGA--CAAATATATCTACCGACCCACTGGATATGTGGATGTGGACCTGTGGATGCATGCCAGGCTGAGCTCGGGGTGCA-GAACTCTTGACTAAGATTGATGGGA--AGACTCATCAGCATCC----TGGATTCAGGTGCCCTGGGGCAAGGGCA-CTGCCTGCACT-GAATCCCAGGGCGTCCATAACCTGCCATTTGGTTCTAC-AGGTCTGGGTTATTATGATGA---TATTTTATTACTAATGAGGCAG-GATTATTTGGGAGCAGGGCAGAAATCTGGGTCTCATGGGGTACACAAATTGCAACCCTGAGATTGAAAGTCAGTGACCTTAGCCTTCTACCTTTT s bosTau2.chr10 57891695 647 - 70001009 AAATGTTGGTAGAGTTACCTCTTGTTTGGGCTTCCTTTACAGCCAGTCCTCATGGCAGGAAGAACGTGCTAGTGAAGAGCACTTAGGGCCACTGGCAAAACA-ATTCTATACAGGGCAGCAAGGGTGCCAGGAATTGCCACCCCAGCCAGGCACTCAG--ACTCACAG---TGGAG-CCTGACCCAGCAGCGGATGAGGCATGTGGACCTCTTTTCCTCCCCCACCCACCCTGCACTGCCTTACCCTTCAACACCTAACTTGTAGGGGCCCCGCCTCAATTCCCCAGGTGCTAGGGATCTTCATGGTTCTAGGACCCCAGTCTTAGAGGTGAGTGTGTCTGCCT-----CTTGATGGATGG--GTGGGCCTTGGGCTGAA----AGGCGCATCC-----TGCATGCACACCTGACCACAATGGATGGGGCCACATTCATCAGCATCTCACTTAGATGCAGGTGCCTCAGGGCACATTCAATTTTCTGCACTTGTTTCTGAGGGTGTTCGTGACCTGCCATTTGGCTCCACCAGTTCCAGGTAATTACAGTGACACTATCTCAGCACTAATGAGGTGGTGCCTGTTAGAGCACAGGG---AACGCTGGGCCTCACGGGGCACACACATCCCAGCCCTCAGAAGCAGAGGGTTTGACCTTTGTCCCCAGCCTTTC a score=18640 s mm7.chr9_random 9645431 915 + 9745104 aaaatcacttagggagtttttaataata-ctggtgtttgggctccctccccagaagttctgatgcaattgggtgaggtcattgctgaatatttgatacatgttctccaggggctctaacgAAACTTTGCAAGTTAATGCAAAACAGAATTCTgagagagag---agagagagagagagagagagagagagagagagaCACTCCCCCTCTTCCCCACAGAACTTTGAGGCAGGCACCAAAGCAAGCAGCTATTCTGTCCTTACTGTAGGTGACCAAGGGATTCTTGCTTTTTAGCTGTTAGAAGCTCAGAAAA-ACTGAACTAAGGAA----AAGAGGAGGAAG-TGGTCAAATGTG-----------------------TGGTGGGACCCAGAGGTTAGTAGGAACCCCA---CTCCTGTCATCAATAGATCATGCATC-AGGCCCTGG-------AGAAAAGTGGAACCTAGTGCCATGTATGCTGGTTCAGCTTCC-------TGATAGCAAATGGGGGTCTC------TTACCCACGTCCACCTTTTCC-CTCTGTGTCTCTCTCCTGTTACTCACCCCCCAAACCCAGGCCTCCAGATGTGCACAGTCACGTGG--------------CTCCCTCCCTCCAGCATCGTGTGCTCAATGAGGAGAGGAACAATTTGTTTCCTTCCTGTAAGCAGCCATCAGCCCCTGGAGCCTGTGCCAGAGTACGAGGGAAATAACCTTCTCTCTCTTCCTG---------TCCCTTGTCTCAGATGTGTTCCTACCCGAGAGTAGCCTGGGGTCCTAACTATGCTACAGATCCACACTAGCCAGAGTGACT-GAACTTAGCATCTCTTTCCTCCCTTGGCTCTCACCCTTGCAATTGCCTCCACCTCTGCAACAGCATCCTGAA-GGTCTTTGGCCTCTAGTTCCTCCTCAGGCTCCAGACTTAGTT----------------CCAAGGCCCATGGTTCAAGGTCAGCATGCTCCCAGG s bosTau2.chr10 57892395 917 - 70001009 AGAGTCACTTAAGGAAGTTTTAATAATAGCAATTCCCCTGGCCCCATCCCTAGAAGATCTGACGCAGCTAGATGAGATCACTGCTAAATAGCTGATGTGTGTACCCCAGGGGCTTGAGC-CTACCTTACAAGTTAATGCAAAACAGGATTCAGAGAGACAGCCCAGAGCAGAGGCTTCCGAGACCAGGGGAAAGAGACAAGCCAGCTGTTCTCAATGAGACT---------GAATCA--------------------------------GACCTAAGGGTGTTTGTTTTCTCACTAAAGGAAGAACAGAAAATACAGGTGCAAGGAAGGTTAAGGGGAGGGATCTTGTTTAGTGTGAAGAGGAGGGCCTGTTCCTTCTGTTGTGGGGCCCAGAGGAGAGCAGGAACCCTAAGTTCCCACTCTTGGTCAGACCAGGCACCCAGGCTCTGGGGAAGTGAGAAAAGAGGGGGCT----CCAGGGATGACAGTGCAGCCTTCAGCCTGAGGACAGGAGACAGGGGGCTCCCTCCTTTTCCTCCGACTGCCTCCCCTTCTCCCTCTCTTTCCCTTGTTGCCC-----------CCAGGCCTCCAGATGTGCACAGTCATGCGGCTGGTCCTGGTTCCCTCCCTCCCTCCAGCACC---------ACGAAGGGAAGGACCATCTGTCCTGCTCACTGCAGC--CCAGCGGGCTGT-GCGCGTGTGCCAGGCTC--AAGAAAGCAGCTTTCACGCTCTTCCTGCTTCCTTTCCTCCCTGCCTCAAACTTGCTTCTGCCCCAGGATATTCTGTGGCCTCTACTGTTCTGCAGACCTGCTGCAGCCAAAGTGGCCAGAGGATAGCATCTTTCCTCTACCACTGCTTTC-------------------------CACTACCCTCCTGAGTGGTCTCTGGCCTCTAGCCCTCCCTTGGTCTCAAAGCTTAGCTATCTGGAGTCTACCTGACTAGTCCCATAATTC-AGGCTGTCAGGCTCCTGGG a score=2942 s mm7.chr9_random 9646374 144 + 9745104 CCCTATGTTGCTATATCCCCTCCATGGAAGTCCCTGTACTGTGTCACTCCTAATGTTGGAGATAAGGAGGAAGGG-CCAATATG----TTTGCAA------------------AGCATTATTTGGTAAGACAATGCAGTAGAGTTATTGCTAAAGAAATAATGCACT s bosTau2.chr10 57893581 158 - 70001009 CCTTGTGTTTCAATATCCTCTCCTAAACAGTGCCTGCAGAATGTGACCCTCACTCTCAGGGCACTGGGGGAAGGGACCAACATGTATCTTTGCTGGCCACTGAACTGACATTTAGCCTTATTTGCTAAGATAAT---------TTGTTGCTAATGAATGAACATGCT a score=64914 s mm7.chr9_random 9647272 3314 + 9745104 GTTGTCCAGGTTTTAGAGGTGGCTCAGCCTCCTTTAGGAGACTGGACTCAGGGCCTTCATGACCTGGAAGACATGGCCAGAGTGCTGATTCCCCTGGTGTCTGTCTTC----TGTTCTCCTGAGTGTCCTGTGGGCT---GTGTCCAGGAAGATCTGGGTCAGCCCAGCAGGAGAGTGTG-------CTAGTGG-------------------------------------CCTGGGTTGAGCACTTTGGGCATTGGAGGAGCATACAGAGA-------------------CAGTATTCC----------ATTTCAT--------------------------------------------------------------------------------------------------CTGGG--------------------------------TAACAATACTGAGGGAATAG------------------AGGGCTGGATCATGAAGGACAAGAGG-------------ACAGGGTGG-------CCGATGAAGCAGCCTAACTCATTTTCACAGTCTCTTATTCACAGAACTGTATCTCCCCACATCCACCCAGGCTCTCCCGATTCTAGCACCTGTCCTCTCTCCTCTGCCTTTTTTTTTTTAAATCCTATAC-TTTCTTGCC----ATCCTCTCCA-CCCTACCTCTGCACTTACTGTTTCCCAGCCACAA-AAAGAGCTGGCTATTGT----TTTCCCAGAGACAC----CCTCATCTCCAGCAGCTGGTCTAGACTGTGCACCCCACCACCCCCA----------CTTCCACCGTTCTCCAGATAGACCCAGAACCACATTAATTCAATTTTCTGAACTGATTGTCG--GTGGCTGGAGTTTACTCCTGCAATCTCC--------ATGAAAAAAAAAAAGGAATTTCCCAGCAAATGAATAATGCAAATGAGACC-----------CTTAACCTATTTAAAAAGGAATAAGCTACTTGAGAAATCTTTTGGAAGCCCCTTATTTACCTGGGAACAATTGATATGGTAATTGCAAGTAATTCtttttttttaaattattattatttaCCAGAGAAGGCTCCCGAAG-GCTGGTGGCCTCCTCCCACGTCCTTGATGGGATCAGCTACCTGTGCTATTCCTGTGGGAGCTGAGGACCAAATGTTCTATGTCCTTGTAGGCTGCAGCTGAGAAATGGGGTCAG---CAGCACCCCTCTTCCCGGATGCCT------------------TCATGGGAC---------------CACATGACCTGCATATCA-TAGTATAAAGGGACAAATCTGCCCTGAGAGTGTCAGGCAAAGCCAG----AACAAGAAGGTCCTGAACTTG-ATAAAGGGAACATGC--TCAG--------TGGTGGAGT--GAGGGCTGCACAGTGGTAGGATGGAGC--------AGAGAGCCCGCTGCTCGCTCACCCAAAGGTGACAGTCAGAGG---TCTGGGCACCTGG-----CAGCCATG-CCCTCAGAGTACCAGCACCACGGATCAATGTCATTTCTTGACCTGCAGATCGATTCTACA--CTCGGAGTTTAATTGCTTTGTTGGCTCTGCCTTGGGGAAGAGAAAG-----CTTTCTGGAGGCAAGAAGCATTGTAGAAAATGGCCTCTGGGCCGCCATCCCTGTCATTGCTCC------------AAGGGAAATGGTGGCCTGCAGGTTATTGACCTCTCTAGG-CCCCAGGCAGGATCTTCCCTGCCTGTGTGTGGAATGCGGCAGGCC-------------CCAGGCTGAGGGCCTTCTAAGGATGGT------GCTCCA-GCAGATGAGGCTACTCTGCTGCTCCTGAGTC--ATGTGGTGGGGCTTGGGTAGGGGTGTGCACTGGGCAGGGAGTGT------------------GAGAGAGAAAGGCAAAGGACAGCA-TGAAAGTTCTGGAAACATCAGCCTGCTGAGGGAG---------------------------------------------------AACCGCCCCGTCT-----------------------------------------------------------------------------CTCCTCTGCTGTGGGGTTCA-------------------------------------------------------CCTGAG----AGGAAGGGTGGAATTATCCTGATGGACACTGGAGACAAGACTGAGAGAAGGATCCAGGAGGGACCTGCCCCAGCTGAATGCTGTGCCCCCGAGAGTCTATTCTGTT---------------TCCAA----AGAACAAGAGGTATCTGGACT----GCCAATGCCCCTGGAAATC-----AGGGTATCCC-----------CCCCCCCTATTTTCTACTCCC-CAAGGCCAGCTCCTCCAAGGGCGTAAACATGTCACTG------GTGGCAGCAACAGTTGAAATCCCATCAGCCATCTCTCCCCCTCAGCCTCACCAACCTCTTCTCCGCTCCTGTGGTTTTCTTAATAAACACCTCTGAAATATTTATGAAGGCGACTTCAATGAAGTAACACAACGTCCCTTTAAAATTGTTTTCTTCT---AATAGGTAGTTTGCGCCTGTACTCTCTCCCACTACCCAGCTCTAGAAGGTGGCCCCATT-GCTTGAAGCCCTGTGTGGTAGGCAGGCGCTCAGGTCTCTCCATTACAGAGCCTGGCAGTG-TGGAT--------------AGGAGTCCAGGCC---TGGAGTGTGA-CAGTTATGAGTGG------AGAACT---AGACTTCGGAGCAAA--------TGGTAGAGGGGGTGGGGAGACAATCTAGG-------CTT----CTGGGAGGTTGTATTTTAGAACCAAGGGGAGCAGGTCCCAGCTGTGGTCCTTAGGGGGTGAG-------ATAAACTGACATCCGTAGTTTTGGTGGCTGGG---------GCTGG--AGAAGGACAGGATTCTACAAGGAAGTGGTGGGTGCTGTGGCTT-GGTAGGGGGTGCTCTGTGTGGGTTTTAAACCCTGAAGGGTTGGTGGCTGGCCTTAG---CTACCTTCAGTAGCCTTGGCTAGAAGGG--------------TCCTGTGTGTG--GGTTGTGGTGTTGGCTGGAGTCTGCATATTGTCACAGATTTGTCT--CTGATCTGTGTAGTTCCTCGGTA----------CCCTCTTTCTTGCATA-ACTCTGGAGTCTCACTCTCAGATCCATTTAGGATGGTATCTCATCCAATCTCCA---GGGACAGGT---GGAAACATCAAGGT-----------CCCCTGCCTCTCCCTAG-CCAAAAGGGACACTTCATCCCATGT--ATCCAGCATGCAGACAGAAGGAAGGGCCCTGT--GAAGAAGCCGTAAAGGAGAGTTCCACCCT------GCCAGGCTGCAGGAAAATCCCT--CTAACAAGAGCTGTTCTCATCCCCGTCCGTCGCCTGAAGCCCAGAGCTGCTCTAATTATGTGTCAGGCTGGAATCTGACAGGAAGCATTTTAATTATTAATTTGAAGTGTACTGAGCATGAGGGAGGAGGGGGGCTGG-TTCTCCAG----CTCATGCCCAGGCCTGTCTGCTGGGACCTTGTTACTGACACCTCACACCTCCCATCTTCCCTCCCCAGCTGAAGCCCCTTTCCTGCCCCGGCCCTGGAT-TCTATCTCCCActtcctcaaccttcctcaaccttcctcaTCTCTCCCTGTGCACCCCT-CTTTCTTCACTTCCCTATGGTTATGGGCACAGATCCCCCTGTCCCCGTTAGATGGATAGA-------GAGACCTGCAGAGGACA-GAAGTTGGTCTGATGTCACAGTGTA-------CATGAGCAGGA-----CCATCAGGCTTTCTGATCTGGGCTTTTCCTTCATCTCTTGCCCATCAGAGGAGGTG--------------TGGCTTTGCCTATTGGATGCCATCTGTTTATCCATTTTATCTAAAATGACA--AAGTGTCTAC--TGTT-TGCTACATATATCTGACACCT s bosTau2.chr10 57893817 4024 - 70001009 GCTGGCCAAGTTGCAGAGGGAGCTTAGCCTCCAT-GGTTGACCATGTCAAGGGCTT--GTGACATGGGAAGCATGGCCAGGGTGCTGATTTCCTTGGTCTCTCCATCCAGGCTGCCCTTCTGAGTGTCCACCCACCTAATGCAGCCGGGAGGATAGGGGTCAGCCCTGCAAAAGAATGTgggcttccctggtggttcggcagtaaaagaatccgcctgccaacgcaggagacttgggttcaattcctggatca--ggaagatcccatagagaaggaaatggcaacccactccagtattcttgcctggcaaatctcatgaacagaaggagcctggtaagctccagtccatggggtcaaaaagagtcaaacatgacttaatgattcaacacCACCACCACCGCAAGAGAAGGTGCGCCAGGGACTCCAGACGTGGGACATTTGTGGAGTGGGCTTGATAGTGCTAGGAGAGGAGTCCATTTTGCTCTGTCTGGAGGATGGGTGATGAGGGAGAAGGGGCCACAGATGACTGACAGGGTGGGGGGAGTTGGATGGGCCATATTCAATCCTGTTTATAAGCCTTTGCTCA-AGCTCT-TGCCTCACTGAATCTGCCC-------------------------CCTCTTTTCTCTGCCTGTGT------AAATCCTACGCACTCCCTGCTGTGAATCCCCTGGATCCCTGACTGCACCTCAAATGTTTCACAGCCATAATAAAGCCCTGGCTCCTTTGCTGCTCTCTGGAAATTCATCTCCTTCTCCCCAG-AGTAGTTCTGGATT---TGCCCTGCCCAGCCTGGGGCACAGAGCAGCCCCTGTCCTCCACTAAGTACCCAAACCACATTCATCCAGTCTCTGAATGCAATTCACACTGAGGCTGAAGTTGACTTCTACACTATGCCCAGAAAAAAAAAAAAAAAAAAAGGATTTCCCAGCAAAGGAATAATGTAAATGAGGCTGTCAAAGGGTGCCTAACCTATTTAAA--GGAATAATCTATTTTAAAAATCTCTTAGAAGCCCCT-ATTTACCCAGAAACAATTGATATGGTAATTGCAAGTCTTTCTCCTTTTT------------ATTTACCGTGGAAGGTTCCCCGCGCTCCGTTCACCCACCCCCACATTCTATGTGGGGAATGCTACCTT--CTAACCCTTGGGGTGCTGG-------ATACTCTGTGCCCTTGCAGGTCACTTCTGCAAAATGGGGTCAAGAACAGTCCCCCCTTCTCTGGTTGACTGAGATGAAGAGAGATTGCTCAAAGGACGGAGGTTCCAAGGGGCACCTCACCTGCACTTAAGCTGAGTGAATGGATAAGTCTGAACAGATGGCCTCAGGCTCAGCCTGCGCAAACAAGAGAGATGTGAACCAGCAGAGAGGGGATAGGCCATCAGACAGGGTGTGGCGGGGGTGGAGGGATGCA-----GGAGGATGGAGGTGGCGGTGGGGAGGATTGCTCTTGTCTCAGTTGAAGATGGCAG-AAGAGGAGCTCCAGGCTCGAGGGGAGGCAGCCATGGCCCCCAGGGTACCAGCATTGCAGATCAATGTAATCCCTTGGCCTGCAGATCGAATCTGCTTTCTCAGGGTTTAATTGACTTGTTGGCTTTGGCTTGGGGAAGAGAAAGAGGCTCTTTCCTAAGGGGAGGAGCTGTATCAGAGGCAGTCGTGGTGTCTCCAGCTCCTGCCCCACCCCCACAGAGAGAAGAAGGGAAA--GAAGACACCATTCTTACCACCTCTTCAGGATCCTGAGCTGGGCCCTCCCTGCCCA---ATGGAGTGGGGCAAGACAAGGCTGAGATGCCTGGGCTGAGGGGCTCCTGGGGTTGGTTGTTTGGCCCTGTGCACCTGCTCTGGCTCTGCTGCTCCT-AGTCTGATGTGGT----CCTGGATGGGTATGTGCATGGGGAGAGGGGAGTAAATGAGGGAGTGGGGAGGGGAGAGCAGAGTGAAGGACAGCAGCCACAAATCTGGGTACATCAGCCGGCCCAGGAAGGGACCTCCCAGCTCTTTCCCGTGCACCACTGGGTCAGaaagtgaaagtgaaaatcactcagtcttgtccgactctttgtgacccaggcaattctccaggccagaatactggagcgggtagcctttcctttctccaggggatcttcccaactgggggatcaaacccaggtctccggcattgcaggtggattctttaccaactgagccacaagggaagccTGAGTCAGAGGAGGGGAACAATTGTCCAGCAG----CTGGGAACAGCACTCAGAGGAAGACCTAGGAGGCCCCTGCACCAGCTCAGGGCTGGGTCCGCAGGACTCTGTTATATTACCTCCTGGGGTTGGTTCAATCTGAGGACA---GGTACATGGCTTCAGAGTAGCTGCCTCCCCAAGGCGGGGGAGGGCAACCCAACAAAGTGGGCTTCTCCTCTTTGCAGCCCCCACAGGGCCAGGCCCTCCGAGGAGGTAGATGTTTCATTGATGGTGGTGGCAGAGGCAGCTGAGACCTCACGAGGCATCTCTTCTC-TCAGTCTCCACAGCCTCTTCTCTGTTCCTGTGGTTTTCCTAATAAACACCTTTGAAATATTTATGAAGGCAACTTCAATGAAGCAACACAACATTACTTTAAAATGATTTTCTTCTTCTAATAGGTAGCTTTGGCATGAGTGCTG----ATTGCCGAGCTCCTAAGGGCAAAGCCAGCAGGGTGAAGCCCCG-------GGTAGGCACTGGGGACTTTCC-TGAATGAGCTTAGCAGTGGTGGACCCGTCACACTCTTGAGGGGGCCAGGCTGGGTGGCAGGTGAGCAGGTAGGA-TGGTTTGACAGAGCTCGGGGACTCCGGAGGAAGGGATTGACTGGCTGAGGCTCTGGGGGAACTG-CTAGGAGAAGAGCCTGAAACTGGAAGTTT---CTGTGGAACCATGAGCAGTACCTCCAAGCTTTGCTCCTGAGAGGTTGAGGAAACCCAGAGGCTGGGAGCTAGAACTCTGGGGTCCATGCCCCACTTTGTTGATAGGAAGGTCTTTGCTCTAGAAGGAGGTGGTAGATGCCAGGGAATAGGTGGGGAGGGGCCTGAG-ATGCCTCGACTTCTTAAGAGTTGGTGGCTGAGCTCAGAAACTACC--CAGCAGCGCTGGGAAGAAAGGCTATGACAGCAATATCTTGTGTGCACAGGATGGAGTGGCATTCAGAATCTGCAGCAGGACTCAGATTTATCTGTCTGGACTTTGAAAGTCCGAGGAATCCCCACCCTCCCTCCTTCCTGTACAGACCCCTGCTTTGCCCTCTCATGTC-AGCTAGGATGGCACTTTGTCCAGCCTCCTCCTGGAGCAGGTAGAGGGGAAATGGATGCTTCTTTCCATGCCCCTGCCCCTCCCCAGGCTGCAAGGAAAACCCCTGTCTATATCTATCTGGAATGCAGATGGAGGGA--GGCCCTGATAGCAAAATCCAGGGAGGAGGATTCTATCCTCATCCAGCTGATCCCCAGAAAAGTCTCTTTCTAACAAGAACTGTTTTCATCACCATT----GCCTAAAGCCTGGAGCTGCTCTAATTACGTGTCAGGCTGGAATCTGACAGGAAGCATTTTAATTATTAATTTGAAGTGTGCCGAGCATCGGGATGGAGGAGGGCTGGATCCTTCAGCTCACTCATGCCCAGCCCTGTCTGCTGGGACCTCATTAGTGACATCCCAGGCCTCCCAGGCCTCCTCCTCAGTCGGAGCCTCTTTCCTGCCATGGTGTAGGATCTGCGTCTCCCAC-TCCTCTGTCTTCCCTAACC--CCCTACTTTGCACAGTGCTTTCTTGTTTTCCTTATTTCCCTGAACCCTT--CCATAGAGTCTACTGTTCCCCATGTACAGACGGGAAAGACTGAGGCCTGGGGAGGGCATGGGGTCCGTGTGATGCCACAGCATACGATAGCCACGGGCAGAATGGAGCCTCCGCATTTTCTAGTTTGGGCTT----TTTAGTTCTTGCCTGCCAGTGGAGGTGGCCTTCTGCCGGGCTCTCTTTCCCTATTG--TCCCATTTTCATATGCATGTCATCTAAGGTGGCATGAAGAGTCTTCTTTGTTGTGTTCCATGCACCTGACACTT a score=5650 s mm7.chr9_random 9652966 198 + 9745104 CCAGAGATCCAT-----TGCTCCTGTCTCCCCAAACCCAGGCTTTGAAGACTCAACAGAGAAACACTGCTTCATTTCTGTGGTCAGGTTTACTGCTTGAAAATAGCCCAAAGTGGCCATAGTCAGTCTCCAGTTCTAACTTCCAAACTTCATCAATATGGATCTGGTCGCTAGGACCCAATTCACACACAGAACATCAGCTGT s bosTau2.chr10 57901176 189 - 70001009 CCAGGGAGCCAGGATGGTGCTGCTGCCTCCCCTCACCCCGAGTTGGAAGACTCAACCCTGAAATGCGGCTGCATTTCCACGACCAGGCTTGCCGGCCCCAGACAGTCCAAAGCAGCCATAGAGAACCTCCAGACC--------------CGCCAAGGTGCCTCTAATTGCTGTACCCCTGTGCTCACACACAGCCTCTGCTGT a score=4598 s mm7.chr9_random 9653523 332 + 9745104 TAAAGGCCAC-ACGGGGCCATTGAAGT---CTTTCTTTCTTCCGTAGGATCTTTTGAAGAGAGGGGAGAAACAAGCTGTTTTGCATTTTGTATGTGAAGAATGGTTTAAAATAAAAATTGAAGAGCTGAGACTGATG-GAAAATTGAGGCTTGGCCCTGGTCACACACCATGACTGTGGTCATGCAGTGAGTCCTGATTCTGATCACACTCTGGCCTCAACTCTGGTCACACACTGACCCTTGTTTCTGTCCATAGGCTGACCCCCCCAAACCTCATCTCACTCTGACTCTGATGTGGATACACACTGAGTTCTGATCCTATGTTATACACTAAGCC s bosTau2.chr10 57902351 220 - 70001009 TAAAGGCCATTAGGGAACCACTGAAGTGTTCTCTCTTTCTTTCATAGGAGGTTTT-AAGGCAGGAGAATGGCAAGTTGTTTTGCATTTTTTATGTGAAGGATGGTTTACATTCGACATCAGGAAGCTGAGTCAGGGGAGCAAACTGA------------------------------------------------------------------GCCCCAACCCTAGCCACACACAGA----------------------GCCCCTCCC---------------CTGCTTCT------------CCCTGAGCTCTAATTCT-TAATGTAGACTGAGCC a score=11447 s mm7.chr9_random 9653999 505 + 9745104 CTCTTGCAACTATCCT-GGAAGGCCCCTGATGACCCCCTAATGATGGGGGCTGTCAGACAAAAGAATGATTCATGTGGCACAGCC-TCTGCTATTGCTGTGTCTGCAGCCCAGAGCTCACGTCTTTAAACAGTTTAAACAGTGTCAGCTTCTAGGAGGTGAAGGATGACTGGACAATGCTTGCTTAGCATTTGATAAATGGAGGTGGAATTGAGGTAGTAGGAGGAGCATGGGGTGAGGAGGGAGAAGAAATGAAGGTGAGTTTCTAGAATATTCCACTTCCCTTTCTACCAGGATGGAGGC------------CCTGGAGCTCCCTCCCCACCCCTCACACACAGGTGGGTATTGGGAAGGATGTACTTAACAGCCTGGG---TGGTATGCACGCTGGCCTTCTGCCTGCAGGGCCTCCCGGAGA--ACTCTTGCCCCAGGACCT----CAGCCCCAAGCCAGTGGGGTCTCAGTGAGGGT---------GGGGCCTGCTCAGCAGGGTAAACTACGCCTGTCAAGCCCTGGCATC s bosTau2.chr10 57902593 478 - 70001009 CTCATCCAGCCATCCTAGGAAGGCCACTGATCAC-----------AGGGGCAATCAGGTGAAAGAGTGATTCACTCATCACAGCTGTTCTCTATCACTGAGTCCACAGCCCAGAGCTCACATCTTTAAAAAGCAGAGG-AGTGTCAGCTTCC---TAGTGAAGGATGACTGGATAATGCTTGCCTTGCACCTG-TGAACAGAGG---------AGCACCAGGAGGGGTAGAGGGCAGGGAG------GAGAGGAAGTTG---TCCCAGAACATTAAACTCTCCTTTCCATAACGAAGAGCACTCTCATTACAAACCTGGAGCT----------TCCTGGCATCGAGATGGGGGTGATGGAGCACCTAA-TAATAACCTGGAGCTGGGTGTGC--------------TCTGCTGGGCCTCCAGGAGAGCGCTCTGACTCCAGGCCCTCCCCCAGTTGCATCCCAGCAGGGTCTTAGTTAGGAGAGAAATAAAGAGACCTGGAAAGCAAGGCTAGCCAAGTCCATCCCTCACTGATATC a score=5193 s mm7.chr9_random 9657993 358 + 9745104 GCCTGAGAGAGGGCCTCCTT--GAGGAAGCTGAACCCCCAGGGCAGATGCGCACACTGAGCAGGCG---CTGAGCACTCCAAGTCTGGGGAA--------------TCTACCCTTGCCTATACCAGGCCTAGAGGGAAGTCTCTATTGACGGTGGCTGTCATCCTGTTCTCAGGCTCTGGGGACAATTCAGTGGATCCTTTTGTTACAGTGTCACAGGCTGAGTACCCCTGGGAACAGTCTTGGAGCTACTTGGGAGTTCCCAAGCTGAGCTCTTGTCT--TGTTCCTGACAGTGTTCTCCTAGGTGCCTCTCAGGCCAGCTGCAGCCATCACCTCCTC--CCGCAGGCTGCTTTATCAGTGCAGACTCACCCATCCTCAC s bosTau2.chr10 57903694 337 - 70001009 GCCTGGGTGGGGCCTTTCTTTCAGGGACACAGGACCCCAAGGG-AGACCCAGATGCTGAGTGGGCAAGACTAG--ACTCCGCATCTAGGGGGCTACCTGAATGGCTTTTCCTCTTGCCTACACCAGGCCTGGAGTGAAATCCATCCTGA--GAGGGCGGCACCTCATCCTCAGGCACCAGGGACACTGCAAGG---------GCCGCACCCACGAAAGCGGGGTTACCCT-------------GAGCAGCCTGGGCCTTGCCAGGCTGGCCTCTTCCCTCACGGGCCTGGC--TTCTCTCCTAGGGACCTTCT--GCCCTCTCCCTTTGGTACCTCTGCGATGACAGGCTGCC-------------CTCAACCATCCTCAC a score=6368 s mm7.chr9_random 9659502 433 + 9745104 TCAGGG--TCCAGACTTCTTTGCAAATCTCTTCCATGGCTTTCATGGGTTGTACCTCGCAGTGAGCCCCAATCTGCCCTGTC-TGTCTTCTAGTGGGCAGAGGATTGGCGGGGCAG---------CCCTTGAGACGGT-TCTGTAACACTTCTGAGACTGC-----------CTGTGACATGGG--------------GAGCCTGTTTCACAGA-------------------GCTCCTGACCCCTGCATGTTCCAGCAGAAACCAG--------AGGGACAGCAGAGCCTCAGGCAAGGTGTATGAGCCTAAGTGTTCCTGGCAGAGAGTCAGATCCCATCA-GCACGGGGCCCAGGCCCTA--AGCAGTGTTGGCCTGAGGTCACCTGAGACCCCTCCATCTCTTCAG-TTTGTTTGCTGAAGACCAGTAAAGGAGGAGAGGGAAATGATGATGATGGTGGCT-------------GGGCTAGGGGGCAGGGTAGTCAGGTGGGCAGGGTCAG s bosTau2.chr10 57904376 484 - 70001009 TCAGGGCCTCCAGGCCTCTTGCCACACTTCCTCTACAG---------GCTGTGACTTGGAGCAACCCT-----TGCCCTGTCCTGCTTTCTTGGGGGTAGAGGCTGGGTCAGGTAGAGTGAAGAGCAGGTGAGCTGGCATCTGTGGT-CATTTGAGATGGTGTTGGCAGCAGCAGTGGCAAGGGAAGGATGCCCTGCTGGGTCTGCACCGCTGACTGTTGTCCGCTATAGGACGCTCCCACCTTCCGCAGGGCTGGGGAGGGAGCAGCTTGCGCAGGGGACTG-AGAGCCGCAGGCA-GGTGTGTGAGCTTGAGCGTTCCTGGCAGGGAGTCAGATCTGATCAGGCACCGTGCCTAGGTGTGGACAGCAATG--GGCCTGAGGTCACC-----CACCTTGGTCTCGGCTGACATGACTGCAGA----TAGCCGAGTGGGAGAGCTG---GGTGGTGGCAGCAGCTTTGCCAACTTCTGGAGTCAGTGTTCAGGGCAGGCAGGTGGGCAGAGTCGG a score=2178 s mm7.chr9_random 9660390 58 + 9745104 GCCCCAGATGACTTTCATCCCCTCTTCTAGGT-ACCCAGGGATATCCCATTCCAAAGGA s bosTau2.chr10 57907059 59 - 70001009 GCCCCAGAAGTCTCTCATTCCCACTTCCAAATGACCAAGTTCTACTCCATTGCAGATGA a score=29236 s mm7.chr9_random 9660486 1500 + 9745104 CAGCAACATCAGGTTCCCGCTTTGTAACTCTAAGAAGTTTTCCT--TTCCTCATTTGTTTCCTTGCCTGACCTGTGAAATGATGGTTGTGGTTAATCCATTTGCTCAATAAAGAAGTATTGAACAACCTGTTCTGCGCAGGGCCCAGATGAATCTGTTATTTAATGTTGGTTAAAAGGCATGGCCTGGCACCTGGCATGCGCAAGGTTGTCAATAAACGCCAGTTTTCTTACACGAGACAGGTTTGGAAGAAG------AAGTGGATGATGTGTGGAGATGGGAGAGGTGGGGACAGAGAATGGGGACTCAAGAGGGGATGTGGGTGGGTGGAGGGCTGGGCCTGCTGCTTCTTGGATTCCCA----CCCCCAAACCCT-----CCTCTTGTTAACATGGCCTGGCCTC-TGTCTAAGGACAAAGGATGATGATGATGATGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgAATGGTGTATCTTGCTTTCTGCCC-TTGGTTTCAGCCAACCACTTCTGTTGACTACTCGACTACATAGTTGGCCCCTTGGTTCCATATGTAGAAAACAGAGACAAGGACAAGGGTCCTCCTTATTCCCAGGTACTCAAGGACACTGCAGTGTGCCTGTCCTACCAAAATGGTGTCAGGGTGAAGAGGCGCCAGCCCTAAGCATGTGTTTCTGAGTAGCTTTCTCACTAAACTGGACCCTCCGGCCCTGTT---TTTCTAGGCATCTTGGCCAGACCAGACCCAGTAAACACCCT---GACTTGTCAAGTCTGTAACTTCACATTCTTCACTC----CTGCCCAGCATCGAGACCCCAAACCAGGCTCTCACGGAGGAGAGTTTATGTGCACATGGGGGTAATGCATGTGTAAGTCTGTGCACGCATGCACAGGCAGCAACATGAGATCTGGCACACTGGAGGTCTTCAATGATGGCTGACTGAATTAATGCACAGTGGATGAACCTGGGGGACTCATTAATGCATTTGGGGGCTCGTTAATATATTTGACAAGCATTTATCAAATCTATGATCCATTCAGTTTTGGG--CTGAGACAGGGGCTATGACATACAGGTTGACAGTAACCAAGTTCTCTCCAAACAG------GTTCACCGGCTTCCTCTTTCCAACACATTT-------CTTACCCTCCAAGGCTTGTGTGGTTCTTGGGCCAC-------------------------------CTAATGTCTACCCTTATGCCAGGACACATATGAGTGCTAAGAAACGGAGTTtgggtttgaatcc--------taactcatattgtatgtcctttagtaaatgatttgacttctctcagacctcagttttcccatctggaaaacaggcacacgtaaaacaatgtgccttgcaatttctgtgaggaatgaatgagataaggcacatgcttacacaattccagtgcatagtatgtgctcg-tgggcggagctctttattATGCTTAGCCCCCTCTCTGCTATGAGGGTCTGCTTAGCTCCTTCCTACCTTCTCCAGAGCAC--CTACAGCACAAGGAAATGCACATGGCAGGTG s bosTau2.chr10 57907746 1412 - 70001009 cagctccaccaacttcctactgtgcatcttcgaacaaattccttgtttgttcatcagctccctc-----acctgtaaaataaggattatggtccatccatttatttaataaataattatcaaataacttcttatgtgccaggcacaactaaatctgtcatttagtgtgcgttaagacatgcagcacagtgcccagcatatactacgtggtcggtaaatgtcagttTTCTTCCGCAAGCTGCAGCTGGAGGATGGGACATAGGTGTGGGGGGCGGGGGGAGAGGGGAGATTGAAACATAGAAGGGAAACTCAGGAGGGGC-----ACAGGTAGAAGGCTGCGCCTGC-----CCTGAACCCCCAGCTTCCTCCTTGCCTTTTCTTCCTTCAGTTGACAGGGCCTCACGTTGTCTCTAAGGGCGCAGGATG-------TGCTGG---------------------------------GTCTCTGAATAGTTTGCCCCACTTTCCGTCCATTGGTTTCATCAGACCGCTTCTGTAGACCA---GATCATCTA-------------TCCCTTGCCTGGAAAACAGTG-----------------TCTGATTCTTAGACACGC--GGGTACTGCCATGTGCCCGCCACATGAAAGTGGCGTCAGATGGAGGA--CCCCTGCCCCCACAAGGA----CAGAGCTGTCTCCTCACTAAGCTGGTCTCTTGCTTCATGCTCCTTTCCCAGGGATC----ACAGGCTGGACCCA-----CCGCCTATGGGCTTCTCAGCACTGAAACCCCACATCCTTCCATTTTGACTGCCCAGCCCT----CATCAGACCAGACCCTCACAGAG---AGTT--------------------GTATGTGT--GTGTGAGCAC-----------CAGTAACATGAGACCTAGCATGGAGGAAGTCTGAAATAAAAGCTGATTGCATGAATGCACAGCAAATCCCCTCTG--------CTAAT-------GGTGCTCattcattcattcaacaaacatttattgaacccataatccattgggtgccaggctctgtgtcgagggctgtgacattcaggttaacagtaaccaagttcTCCAAAGACTGAATGGCATTCACAAGCTTCCTGCTCCCAACGCTCTCACTCACACATACCCACCTGGGTCCGAGAGCTCC--AGGCCCCTCCCTCACTCCCAGAGACCAGAGCGCTGGCTCCACCATGGATTTTGACAGCAGTAGATGTTTTAGTGCCgagtcactgactttggggtcgaatcctggcgccataacccatgctg--ggcccttaggcaaattatttaacttctcagag-cctcagtttcctcatctggcaaacaggcataagtaaaaatgcttatctcatatttgccgtgaggatttaacaaaacaaacaatgcgtagagcaacactcagtgcacaatgcatgctcgatgaacgtggactattatCACGACT---CTACACTGTATGGCAAGTGTCT-----GCCCCTCTCTGCCTCCTCCATAGCATGGCT-CAGCACAAGTCCAAGCACACAGGAGGTG a score=67335 s mm7.chr9_random 9662031 2801 + 9745104 AGACACCAGCAGAGGCCTGGAGGCAGGGAGGAGCAGGAGGCAGAGCTG-GCCTGGTGGAG---------------GAGGAACCCAGAATTGCTGTGTGTGCTCTGAGGATGGGAGCAT-CTGCTCTGA--------------TGGTCAGAATGCCT------------TTTCTCCCTGGGTGGGCGTGGTCTGTATTTCAAGTTTT-------CCTTAAGAAGTCTATCCCACTGCCAGTGAGGTT-----TGGATTTGGCAGGTACACCA-------CAAGCTTTCTGGG---CCTTCACCATGGTGGACCCAT---CTCCACTTCAAAACCACGACACACCCAC-TGTACACCCCACTTGGGCACAAG-----AGGT----------------------------TGAGG----TTATCTGTGACCAAACACAGTCATATGA-GCCTGAGTC-------GGAGAGGCATTTGAGAGAGGAAAAATCCCTTACTCAGGGCTCTCAGAGACCC-TGGccctgggtctcagtttcattccctgtgaaatgggaactCTTCTGGAGGTTTCATCTCCGTAATGATTGAAAAGATGAGA-------------AAAACTAGCTCATCACTGATGAGGGGAAAAACAGTCTCCGAGAGAAGGGAAGAGTG---------GGAACT------GTTCAGTTCAGGG---------------------------------------AGGGCGGGGCCTCGCTGGCCC---------------------------------------ACTGGT-------------------------------------ATGAGCT--AACCCCTG----------CTGGCCCC-----AGCTGGCTATCAAT-------------------------GGACTCCCACTCTGGTGGCTGTACCACA-CTGGCTTTGTAGGGCACTGACCTCACCAAAGTAGGGACAGATCTCATCCTGT------GATACCCTAGGTTGCCTAGATTTCCCGGTCATTGTC------------CTTGTATCTAGACCAGCCTGC----------TAGTTCCCACT-CTGGGATTACACAGCACCTCCCCAGACCTGGGCAGCAGGTGCTGGCAGA----------------CCACAAGG-----------CCCTCCTGGCAGGC----CGTGGTTCTGTATTTATAGAAATGTCCAGGGCTGATGCTCTCAC----CAGTTCACTGACCACATCTCTGCTCCAGGTG-GGGGTAATGAGTCA---CACTGTGGCCATCTTCTAGCCTCAAGCTGTTTGTAGGGGCAAAGCCATGGGATACTTCTGACTCAGG-ATAGCTTCTGATCCCGTGGAAGTGGCTTC------------GACTAAGCCGCTCTACCCTGAAGTCACTGGATATGTGGGCTGGC-CCACATTGACCACAGTAGCCATGTAGTG---CCTTCAGTTTATCTAGAGTGTGtgcactcatcaccctgctggatccctgtgactgccactgaggt-ggtgaagactatcagacccattttacag------tagaaaagatca-agaggcaaatggattggcccaaggtgacacggttgctatacatcagggccaggCATAACCTGTAGACTACTAGTTCTTGGGGACAGGAAAGCAGAGgctctgtggccttggatcagttactttacctctctgaacctcagtcttctcatttgaaaaatggagc---------------------------------------aatgaggtaatgttatatggtgtgttgAGCACAGT-----------GACCTGCTCAGTAAATGTGAATGGTGACTGCCGACATCACCCTCAGGACATTTCAAGGCTGTTGCTGGGAAGATCAAATGCCAG-CAAAGCTCTGTTGCTGCTGTACTCTGCCTGCATCTCTACT---------CAGGACTTAGTAAGGTGGGCTAAGGGGCTGGGCATGCGGAAGTAGGAGCCAGGTGGAGACACTGGGTACCCTAACTCTTGCTGCCTGCCTAGTGCAGACGGCCAAGTGCATTTGT---GTCCTGGTTCCCAACACTATGGCAGCTGCTGTCACTGTC-CACAGATCTTGGGTCTGCTCGGGGTCAAG--------ATCTGAGAAT------------------TCTGAACTCCAGAGCTAAGGATGGGAACTGAAAGA--TTGGAGTGGACTGGGTTCTCAGATTGGACT------------GGCCTGGTCCTGCAGCTTCTTAGCTGCCAGTCTCTGGGCAGTACAGCCTGCTCTATAGCAGGACAT----CCTTCTCAGTGTCTGGGGCAATCCTAAGATGCAGGGGGTGAAGGCAGGGTTGTCTGGG----GCGGGGGGTCGGGGAGACAAGGTACTGGCCTTCTCAGG-------------AGGACATAGGTGCTT------CTGGGTCTACCTGGAGTGGTGTCAACTGTGGGCTCTAAGTCCT-TAGTTTCTCTGG------------TGAGCCCTGGCCTGGCATACTGTTCCCTT--AGCTTGCCTCCAGCTGCTGGGTTCCCTGGAGGAAATGGCCCAG---GTTAGCGATCACAGACTTCCATGGTGTTGGGGAGTTGTAGTGGGCATGGTGAAGGATCAG---------------------------------CTTCCTTCAGGGAACC--CTGCCATACAGAGAGGAGGGTAAACTCTGG-------------------------------ACATCTGGTTGTTTAGGATGAGCTTTCTGAAGGCTTTGGGGCCTGTGGGCCCCGGATCCTTAAGTGTTTATGAATTTTATTATGACTGTGTTTGtttaaatatatatatatatttataCCTCTATGCATCCCCCGCCCCCC-----CCCCCAAGCCCCTAGTTCTTGCCCTTAGCTTTCTGTTTGGTGGCCGTATAGGGCAGCACTGTCTGCGTGCTCTTGTCTGATACTGTCTGAGTGCTGCTGTTCCTTGTGACCCTCCGGGTCTGTTCTGGGGCCAACGTGGGGCCCAAGCGTCGGGTGGTCAACGGAGAGCGCTTGGTCTTGTAGGGGGCTGGGGAGGGCTTGAGGGGGCCTGTGTGTGGCTCCACGCGGGGCAGCTCTGGGGCCAGGtccccctcctcctcctcctctccctcctcaccatccccctcttcATCGTCACAGCACAGAGCATGGTAGAGCACTTTGTCACTGAACCGTACCCTCTCCCTCGTCCCTGGAGTCCGCTGGGGCACCTGGCCCTTTGCAGGGCCAGCACTGAAGGCCTCTTCACTGGAGGAGTCTGAGTGTCTCCACTCGTGGCCCCTTGGGGATGGGCAAACCACCATTCATG s bosTau2.chr10 57909606 3294 - 70001009 AGAAACCAGCAAAGGCGTGGAGGTGGGGAAGAACAGGGAG--GGACTGTGCCCGGAGGAGCGTGAGGGTTGAGGGGGAGGTCTTAGGGGTGCTGTGACTGCTCAAGGATGGGGAGCTTACTACTCAGAAGCAGCAAGTTCTGTGGCTCAACAACCTGACTGTTACAGCTCTTTCCCTAGGTGGCCACGTTCTCCATTTCAAGTCCTAAGAAAGTCATGGGGATCCCACTCCACTGGCAGCAAGGTCCAGACTGGATGTGGCATAGTTATGAAGGAAGTTAAGTCATTTGGGGGGTCTTCTAGAACAAATACCCATTCCCCCCACCTTTT--CTAGGACACCCTCATACCTCTGCCCTATTTGAG-GCAAGTAGCCAGGTGATGGACCAAGGAACGGGTCTGGCTAACTGAGGGCTATTAACAAGGACCACATGCAATCACAGAAAGCCAGAGTGAGGGTGGGGAAGGGGCTCCCAGGCAAGGTCAATGCCTTACTCGGGACTCTCAGAGACCCCTGGCTCTGGGTCTCAGTTTCTTCCTTGGAGAAATGG---------------TTTATTTTCCTTGACTGTTGTAAAAACGAGAGACTGTAAGTCTGAAACCAATCTTGCCATTA--GAGAGGAAAATCAAGTGTTGGAGGTAGCACTGGGTGTCTTTCTTCAGAGCTAGGTGCGTCCACATCTGGGGTGAGGTGGGCTGCTCTGGATTGCCCCCTCCTCACTGTCAGGGCAGAACCCAGCTGGCCCTGGGCGCTTGGCGTTCATTCTCTGAACCAGGGTTCCATCACTGATCAGCCCCAACTGCCTGAGCATTTCCTGGGTCTGATAAATGAGTTTAGACCCCAGGTTTTCAGGCCTGGGCCAGGAAGAGCTAGCCACCACCCACCCACCTCCAACCCCCCCTGCCCGGATTGCCACCCTGGAGGCTGCACCTTGGCTAGATCCTTAGGGCTCTGACCTTAACCCTGTATGGAGAT-TCCTATACTGCAAAGCAGGCAACCTAGG---CCTGGCCCATCTGGTCCTGATCGCATCCTCAGCACCTGT-TCCACGCTGGCCTGCACAATCTCTATCTTCCCCACTGCTGGGACTGCACAA---------------GCGCAGTAGGTGCTGCTAGGTTGCTCGTCAGGCCCCCCACAAGAGGAGCAGAGACCCCTCCTGACAGGTGGGTTGTGAATCTGTCTTAATTAAAATGTGCAGGAGGGAGGTCCCCAAGGAGTGGTGTCCTTACC---CCCCTGCTCTGAACAAGGGGCAGCGAATCAAGGTACCGTGG---------------------------GGGACAGTGAAGCAG--------TGACCCAGGGATAGCTTCCAGTCG-ATGGAAGTGGCTTCTCTGCCCACTCCAGTCAGGGCTCCCCACCTGGAAACTACTGGA-ATCTGGGTGGGGGCTGCACTGACCACagtg--catgtcctgtaccctggcatttaccaactgctttcacatcccccatcttgtcaaagccccgtagcccccgatgaggtaggtgaggactatcagacctattttatagatgaggcagataggctcagagaggcaaatggatttgctcaaggtcacactgctgctagatgacagagccgggTATCACCTACATGCTGATGGT------GGGGAGGGTGGCACAGgctctgtgactttgggccagttacttaacctctctgaacctcagtcttctcatgtgaaaaatggggatagtgatagttctaccttgtcagattactgtgaagattaaatgaaataatgctgtaaaatgacctcagcatagtcgtggcctgggggcctactccataaatgtgagcAATGATTGTGATTATTATCCCAAGGGTACTCAGATGCTGTCCCTGTGTAGGCTACACGCCAGGTAAAGCCCTGTTACCTCCAGGCTCCCACCTTGTCTCTGTTGGTGTCGCACAAGACCTGCTAAGCTGGGCTCAGGGTCCAGATGTGGAGAAGCAGGGACAGAGGAGGGCTGCAGG--ACTCCTCTCCAAGCTGCCTGCCTGGGGAAGGGGGCCAGGAGTCTGTCTCTGGCTCTGGTTCACAGCCC-----CCACTGCCCGCTTTCTCACATGGACCTCAGGTCTGCTCAGGGCCAAGCAGGGACTGGCTGAGGCTCTCCTTGAGTCTTTCATCTCTAAAGGTCAAGGCTGCGCATGGGAGCTGAAAGGATTGGGAGTGGTCCAGGTTCTCAAAACAGACCTCTGCCCAGCCCAGCCTGGCCCTCCAGGGTCT-----GCAGGTTTCTGAGCATGGAGGCCCAATC-ATGCTAGTGTCTTTTTCCTTCCCTGTGTGCTGGGCAACCCTGAGATG---GGAGAGGGGGTGGGATTGGATGCACTCAGCTAAGGGAAGGAGAAGCAAAA----GTCAACCTCGGGGTAAAAGGCATAAAAGGCACGGGCGTGTGACTGACCGGGCCCAGCCGGAGTGACGCCACCCCCAGACCCTCGGTCCTGCAGTCTCTTCCGAATCACTGACCATGAGCCCTGGCCTCGGAC-CTGCAGCCTGGGAGCTCTTCTCTTGCTCACGAATCCCCTTCAGGGCAAGGCCCAGACTGTTAGCCAGCCTCCACCACCGTGCTCTGCAGGGGTAGGGGTGGG---GGTCCCAGGTCAGACTTCCCCTTCCTCATTTCTACACATTTGGATGCCCCCTTCAGGGGTCCTGCTGTGAGAAGGAAGGGAGGGTGG-TTCTGGCCACGCTTCCTGGGAACTAAGAGGTAAGCAGGCATCTTGT-GTCCAAGATGAGCTTTGTGAAAGCCTTGGGGCCTGTGGGCT--GGATCCTTA-GCATTTTAAAATTTTATTATGACTGCGTTTGtttaaatatatatatatatttataGCTCTATGTGCCCACCGCCCCCCAGCCCCTCCCCAGCCC-TAGTTTTTCCCCTTGGCTTTCTGTCTGGTGGCCGTGTAGGGCAGTACCGTCTGCGTGCTCTTGTCCGACACTGTTTGGGTACTGCTATTCCGTGTGACCCTGCGGGTCTGCTCAGGGACCGAGGTGGGGCCTGAGCGGCGTCCAGTCAGAGGAGAGCGCCTGGGCTTGTAGGGAGCCGGGGAGGGCTTGAGGGGGCCAGCAGGGGCCTCTGTGTGGGCAGGCTCCGGGGACAGGCccccctcctcctctgcggcctcctcctcgccgtccccctcctcgtcgtcACAGCACAGAGCGTGGTAGAGCACTTTGTCGCTGAACCGCACCCTTTCCCGCGTCCCCGGGGTCCGCTGGGGCAGCTGGCCCTTCACAGGGCCGGCGCTGAAGGCCTCCTCACTGGAGGAGTCCGGG-GTCTCCACCCGGGGCCCGTTGGGGACGGGCAGGCCACCGTTCATG a score=7318 s mm7.chr9_random 9715720 151 + 9745104 AGAGTCTTCTTATGACTTTCATGCTGTCTTTGCAGTTATACAGAAATGTTGGAAGTTACCTAGAAATATACCATGTGAAGCTTTAAAAAGATAGAGGCAAGTCTTTTGAAGTCCATAAATTTCACTTCCTGCTGTGTTTAATTTCAGGACC s bosTau2.scaffold3218 2585 150 - 87843 AGAGTTTCCATATG-CCTTCATGCTGTGTTTTCAGTTACACAAAAGTGTTGTAGGTTACACAGAAATATGCCAACTGAAACTTAAAAAAGAATGTGCAATGCCTTTTAGAATCCATCACACTTATTTCCTACTGGGCTTAATTTCAGAACC a score=26935 s mm7.chr9_random 9715874 971 + 9745104 GCTATGATTAAACTTTTAAAGATGTTTGTTCTTTTATCTGGGGATCATATTGTAAGGTACTTATT-----ATTTTGTGTGTGTGAAAAAA--ATTCTAAAATCTTTTCATCAAGCTGTATACTTGGCATCCTGTTTTTGGGATGCTCTCTATCTTACTTCCTGCTG---TCAGTTGAGTACAGATGGATATGT--GCCATGGAAGAAGCAAGTGGAA-TATTTTAGGGATTGTTTTACCACCTTGTTCCCAAAGATGCCTACATCTCCCTGGTACTATTTATGAA-AGGTCCTGGCACACAGAGTAGATGATCCTGCTGTACTGTG-CTGCTGGGGGCAGCAGGAATGCCTAGGAGCAAGTTTGTCTGTGTTGATTTACCAGGTGCAAGAGAATGTGTTAAATGTTGCTGCTCTCAGCATGTTCCT-GGTCATTTAATGCGGGCAGGCAAGACTGCATTTAGGTCAGAGGGAGGGTTTTGTTTGGCTTGTAGAGTGGAGATATTTATCCCCAACTCTGTAAACTTATGTCACTTATTATTGTGTTCAAGGGAGTTAGCATAAGGTGGTGAGGTTGAAAGATCACCTTCATTACATTGCTTCATTCCAGTGCGCAAACCATATTGAGAAACTATGACCTCCTTGAGAACTTTTAAAATTCAGTTTAAATCTGAACATTTTCTGCATGATGAATTTGAAGAAAAATCATTTTTGGTAGCTTTTCTCATGA-CTCTTTACACATAAACAACCCCAAATTCTGTGTAAACAGTTGAGAACTTTGCAAATTCACCTACCA----GAAAGGGCGGTATAAGGTTTGGGGTTGCAGTGCAGCCTGTAATTACATTAAAGGGCATCCAGTGC-AAATATTAGTGACTTGCTAGCTCTTATACTTTAAGCTTTATAAAGTGGAAGGAGACAGTTGTGAAAATAA-------------TGTTTGCTCTTCTAGaaatattgaataattattttatttttcttttaaa--atttatttG s bosTau2.scaffold3218 4289 987 - 87843 GCTATTATTAAACTTTAAAAATTGTTTGTCTTTTT--CTGGGGATCATAGTGTAACATGTTTATTTATTTATTTTGTGTGGGTAAAAAAATGCTTCTAAAACTTTTTCATCAAGTTATACTCTTGGAATCTTCTTCATGAGA-ATTTTCTAACTTAATTCCTGCTTAATTCAGGTAAGCCCAGCTGAACTTGCCATCTATATAAGAACTAATTGAAAATATTTTTGAGATGGTATTTTCACAAGGGTCCGAAAGGTGACCAGAAGTTTCCAGTGCTGTATATTAAGAGTTTCTGTGATTCAGA-CATGGAATTTTATTATAGTATGACTTTTGGGGGCTGTATGAACAGCTGGGAGCTAGTTGGTCAGTGCTGATTTGCCAGGTGTAAGAAACTGCTTTGT-TGATGCTGTTATCAGCATGTTCCTTGATTGTATAATGC----AACTGAGATCATATTCAGGTCATAGGGATGGTTTCATCTTGCCTGTATAGTGCGGGCATTTATACCTGACTGGGGAAACTTATGCCACTGTTTGTTGGGTTCATGAAAGTTAGTAAGAGATAGCAAGGTTGAAAGATGACTTTCATTACATCTTTTACTTAAGTTACTCAAACCATATTAGGAAACTG-GCTTTCTTCAGGAACTTTTA-----CTGTTTAAGTCTG--TAGTCTCTGAGTGATGGATCTGAAGAAAG--TAAATTTGGTAATTTTTGTAATCATTTTTTTCCTCATGAATCGACAAAAATATTGCAAGAGAAGATGCAAACTTCTCAAATTTAGCTACCAAGGGGAAAATGGAACAGCTGACACTATGTTGCTTTGCCATAAACACAAATATAAAAGAATAAGCAATTTAAAAAATGAGTGACCTGCCTAAACTGCCATTTTTAGCTTTATGAAGAGTGGGGGACTGGTTATGAAGATAAAATTTTGTCAGTCTGTTTTTCATTCTGT--TTATTGATTCTTGATTTTTTTCttcctgaaaaacatctacttg a score=2397 s mm7.chr9_random 9719331 153 + 9745104 ATAATGTATTTCTTC---TCCACTCTTAC--TTACTCTTTTATTTTATTTTTCTCATCTAAA--TAACTGAACT-------TTTGTCCCCCTTACCTGT-GCATC--TCTTACATTTTTATTTGGTTTGGACATGATCATC------------------AAAACTTTAAAGTTGCTTTTATTTTATTT s bosTau2.scaffold3218 7983 188 - 87843 ATTATTTATTTGTTTGCTCCCATTCTTATCTTTATGCTTTACTCCCTTTTTTCTGATCTAAAAATGCTTGAACCAAATTAATTTTTCTCATTAAATTGTTGCCTCCTTGTTACTTTCTTATTTTTATTGATATTGCTGTTCTCCGTGTTAATTATGTAAAAAATTTTAAAGTTGCTTTGATTCTTTTT a score=16146 s mm7.chr9_random 9721066 851 + 9745104 acatccaagtgtaaataaaatatagatggcttaaatca---gagaagttggtgttgggaaaacatagatgt------taattatagatgacattgaagtccttgagaatggataagatcacttacctattg----gtggagacgagaagagaaacaagccaccaagagtagtagcactaagctactgaaacatGAATGTCTGGAATAGAAAATGCATTAAAGATAGAAATCAATGTCATTCTTGAATCT-GGCAGCAAAGAAAGCTTCATGTAGGGCATGCCTTTAAGTCCAGGCCTAAAGAAATGGCAGCATTTTCACACTAATGTTCATAAAATGGACTCAAGGCAGCAAGAAGCTGCACAA---AAATCTCATGTAGATTAGGTTTGGGATGCATTTAATAGAAACATAATTTAACCACCAGCAAAGCTTGAGTACTCATTCCTCTGAGTGGTGAAACCCAATCGCCTTCACT-GTCCTTTTGTTTC-CATGGTACTTCTCAAC---TGGTGATATATGGTCCCCATGTTTTATTCCTTTTCTGCTCCTGGTGTTTTGGTGGCAGTAGATTAGAGTCAA-----------------------------TAAGCTGCTATTTATTATAGGTGACACAGCTCCTGCTTTCACAATTCAGAGAAAGCTCTAGGTTTAGCCATAAAGTGTCAGATGAAAGTGATGTACTGATTATAATTTAAAACAAGTCTATCTATGAAG---AACTCAGTGCAG--TCACCAAGAAGCACTGGATATTATCAAACAGGAACTTCCATAGTTTTCTGTACAGTGTTATTCCCAGCCTATA---TGCACAAATTTT---AAGAATTCAATATGAATTAATCACTGTCCATATCTTCAGCATGTTCACACT--AATGTAAGGAATAT s bosTau2.scaffold3218 10850 846 - 87843 atacacagatgtaaa--gcatgtagttgact-acatcaagagagaggttagggttaggaaaa-acagaagaactcaataattatgggtggcactgaaagtcttgggactggataagatcacttaccagtcataaaatcgata-gagaagagacccaaac-actaaggccagggacTGCAGACAATTAA-----TAAGGTTTACAA--GAAAGGGCAATGAG-----------ATTCCACTCATGGAGTtaggaatcagggaaagtttcacgtaaaatataccatttgacctaaccctg--gaatcagcagaattttcatattagtgctggtgggaggagtctaaggcagtaaagaactacatgagcaaactctcgggggtaaaaagtgttgaatgcatttgacaaacaCATTGCTTAACCACCAGCCGAACTGAAGCCTTCATCATTC--------------------CTTACACTCATTCCTCTGTTTGGCATGATACATCTCAATATGTGTTGCTTTTTGATGCTCATATTTTATGCCTTTTCTATTCC----------ATAGCAGTGGATTACAGCCCAGAAACTATGTTATTGATTCACAGTGAACTCAAGCTGCTTTTTATTATCACTGTC----------TTTTCACTTTCTGGAGAAGGTGCTTTGCCTAGCCATGAAATGCCAGATGGCAGAGATGTATCAATTAAATTCAAGAATAAATGTATCTATAGAACAAAACTAGATATAAACTCATGAAGGAGCCCTGGCTTTTATTAGA--GGAACTATGACAGTTCTCTGAGCTTTTATCTTATAAATGTATAATTGACACAAACTTCTCCCGGGATTCAG-ATAAATCAGGCATCTTCCATGTCCTCAGGATTTTTACTGTGTAGTATAAGGAATAT a score=18543 s mm7.chr9_random 9722498 1134 + 9745104 GCATGCAATCCTAAATCTAGTGTATTTAGCTGGAAACCTAGAATTGCTCTTTTTAGCACTGTTGATCCAGGAGTATACTGCTGTTGGAtgttttgttttgttttgttttgttttgttttgttttgttttTACATTGTTGGAACAACTGGCCCAATAG-CTACTTTTCATACTCTAATGTCCTA------TTAACTGCCACTGAT----------ATCTCTCACCCTGATGCA-TTCATGCCTTTCCCTGTACACATCCATACTTTCCTGGGTGATCTACTGCTAATGAGCTTAAGTCTACATTGCTGTTACT-ATTTGATAATTACATGATACAATGGATCCCTGATCTGTTGGCATCAACAGCAATACTGCCTTCATTTTCTTTTACTCAGTCTTGACTCGCTTCTTCCTT--------------GAAATTCCAGGACGTTTCTGCTGAAG-------------TGGCAGTAAGCATCATAGCACAAGCACAAAAGTGTCTAAGTAAAGGGCAGTTA---AAAGCTGAGAAAAGTTGTTAATGAAAACGTCATTGTCT--------------TAGAGCTCTGTTGGCATGAGAAATGA--TCTTTCTCATGGTTTTCTGACTCAGGATAATGAAAGCCTTGGGTCTTGGGAGGTAGGGTTAAAATTCTGTGGTGATAGGTATCTGTGAAAACTATTCCTGTGGAT-CCCAAGTGAGATATTACTCTCCTTTAGCACATTCTAGAACCCTGCACTTTTGCTACTATTAATACATAAGGACCTCCAGGGAACAGGCACAAGTAAGAGATGATGCCTTGTGGTGCTAGTTCACCATCTGCTTATTTGAGTAAATTGAGTTTGCCCAGAAGAAAACCAAGAAAACAGCTCTTGTCAATCTTTTAATCTAGTTTTCTTAATTATATGCAATTTGAAATGGATACAATTATAACAACACTGAGCATAATTTCATTCCAACATCTAATTGCTTGAAGC--TATTGTGTATTTTGCCAAAT-------GATGCCCACCATCTTTCTATTTTCTGTTCATCTCAGTGTCATTAATTAGATGTTCATGTTTTCCATTGTTGCTTGGTGTCATGTTACCCACATGTCACTTACACTGTACCTATCTCTGTTTTCACTTTGCTAT--GTGATTTGTGGCAGTCAATGCCATCACTACCATTCTTTACTATTATCCTCATAAG s bosTau2.scaffold3218 12137 1108 - 87843 GCATCCAATC----------TATCTTTAGC---AAACCT-------TTCTTTTT-----------CCCAGGAA------------GCATGATTT---------------------------------TTCACATCCTCTAAATTGCTGGCCATGTAAATTGATCTTTATGTACTGATCACCTGGAAATGTTAA--ACCACTGATTTAATATCCAGTATATCCACCCACTGCACTTTTTCCCTGTCCCAGTCGTCAGTTGTAATATCCTGGGTGAGCCGTTCTTGATGGGTGTAACATTACATTGCCCTCACCCACTTTATCACTATGCTTTATTATGTAGCAACAAACCCATAGGATCAGCCGTACTGCCCAGCTGGTTTTGCTTTACTTGTCCTGGTCCTACTTCTCCTTTCTTTGTTTCCTGCTGAAGCCCTAGGATGCCTCAATCAAAGCCCATGAACAACTTGGCAATAAGCATAATAAAAGAAGTACACAGGTGTTTAGATAAAAAGCAATCATTTACAGTCGCG----GTTAGTGATGAAAATTTGACTTTCTCTCTCCTTGAAACCTAGAACACTGAGGACATGAGTATCGGAGTCACGATCACTCTTTCTTGATTTAGCAAAAGGGAAGACTTGGGTGATGGGGAAGAGGGCTAATATCAGGCGGTGAT-TGCGTCCGTGGAAATTGCCCCTCTTTATTCCCGAGTGAGGTCTTCCTCTTTGTCAGCACGATC--ACACACTGTACTGTTCTTACTA------CACAAGGACTTCAAAGGATCAAGCAGAAAAGAGAGGTGCCGCATTGCC---TTATTGCATCACATGCTCGTTTCCTTCCAGAAAGTATGCCAAGAAGAAAGCCATGAGAAGAGCGTATGCCAATTTCTTATACTAGATC-CTTAATCACCCACGATTTGAATTGTACACAAATAAAACAGCAGTAAGCATAATTTAATTCTAACATCTAATTACTTGCAGCAGTATTGTGCTTTTATCTAACTCTCCCAACATGCACATATATCATTTATTTGCAGTTGTGCTCATTGTCATCAACCAGAGCCTCCTGTCTCCCAGTGT---TTGGGCCTGTGCTGTCCAC-TCTCACTCCTGCTGCACCTGTTCTTG----CACTGGGTCATCATACATTTGTAGAATTCAGTCCTCTTGTTCCCACTTCTCCCCAGCATTCTCACAAG a score=2960 s mm7.chr9_random 9739437 85 + 9745104 ATATATTG-TGTTGTCTTAACATTACTTTGAAAACTTAAAGGTTGAATCATCATTCTTTTGATGAATAGCACCCATTGAACCATCT s bosTau2.scaffold4257 56830 85 - 68296 ATATATTGGTTTTTTATCTAAATTATTTTGGAAAATTTA-GATTGAATCATTGTTCTTTGAGTCAATAAAACCCATTTGAACTTCT a score=17976 s mm7.chr9_random 9739522 1101 + 9745104 CAAATAGATAGACACTTAAGGATAA--TAAACAAAATAAA-AATTCTTGGAGTAGATTAATTGGCTGTGATAGCACATGAGAAATGTATTT-AGTGAAAGTAATTGTCAGGCCTTTGATCCAAACTAGGAAATTACTTCTAAATGAAACAGTCATTATACATGCTGACCATGGCAGCAATA---GGATTGTTACAATGGAAAAAGCAATTGAGACAATTAACCAAAAGCCACCAAGCATAGTGATTAATTGTCAAAATGGAGTACCAATTGCTGAGG-AAAGGTCAAGGTGTTACTGAAA--GCACAGGAGTGTAAACAAAAGC--AGAGTTGGAGAAGGAGTGAAGTCATTTTAGAGCAATG-----------------------------------GCAGAAATGGGAAA---TACCATACATTTTAGAGAATGTTATAGG-------------------------GGTGATTC------ATTGAGGTGTATGATCATGGGGTTCCCTAAAGCAGCATGCCTCCTAGTAAAAAATTAG-TGTATGTAA-------AATGGGTCAATGAGAAATAATAAATATAACAGACCATATCCA----------TTGA-----ACATACTGTGATAGAACAAAATAGC-ACTTCAAAGAAGTCATGAGAAGATTTGAACCCATCAACAG--------------CCACTTCAATTTTGCTTAACTTAGACAACTCAAG--TAGTAGAGTATTGTAGAATTCCACAATTAGGAGGCCCATGATTCAGTAGTATTTAAAAT----CCTAAGTAATTAAGAATGCCAAGGAGGTTTGAATTCTTGGTGACAAATGAGGTCAACAATTATGCAAGGAAATCAAGTTGAGGAAATACTGTCATGTGAACATATTGCTGTCATCTATTAGTTACCCCAAGGTTATAACACTCTATAACAAGTTGTCTTCTTGAGGATTTCAATGACTGACAATG--TACAGGTGAACATAG-CTGT-----------------------TTAATTTCCTC--TCA-TAAGCATCATAGACATCATTCCACAAGGAATGAATAAGTTAGTAGTAATCAGTATTCTCACATT--CAAAATTT------TTGTACTCTAGTTAAAAGATGAATAGGGACACACAGTT---ACCAATATTAAGAAGTACTTATTATAC--ATTTCAGATTTGTG---AGATTT---GCATACATATATCTCATGCATCCATATACTTACATAGCTATGAAATTATAGAGA s bosTau2.scaffold4257 57130 1241 - 68296 caAATCAATAGACACTCACTGCTAAAACAAATAAAATCAACAAGACCTTGGGTGGTTTAATTGGCTTGGATAGCACATGAGCAATGCATTTCAGTAAATATAATTGTCAACTCTTTTATCCAAACTAAGAAACTGTCTCTAAACGAAGCAATCATTATACACTCTGACCATGACAAAAATGATTGGGCTGTTACTATGGAAAAAGCAATGGAAGCAATTAACT-AAAGCTACCAGCCTCTGTCATTAATTGTCAGAATTGAGG--CTATTACTGGGGTAAAGGTCAGAATGTCAAAGAAACTGTATAGCAGTGCAAGCAAAATCATAGAGTTGAGAGAGGACTGATGTCAAGGTGGAATAAAGCTTGTGAGTAAGCATTTAAAGAATGCCCCAATAGAGCATAAGTCTGAAGATTGACCCCAAATGAGGAGAGATGTTCTCAGTGGGAACAGTTTTACTAAAGCTTCAAGTGAGTCCCAAGAACCAAAGTGCCTGTCCCAGTCTTTCATGAGAGGAACATGCATCCAGGAAAAAATTTGGCTgaaggtaggaatcacagtgaagcagcaacaattagtaagaatatc---ccctccccacttcctggccttgagagacatctcctgtgatagaataaaacagcttccttgagaaggctacaaggaaagttgtgtcc-taaagagaaaATAAAGGAAGAACTTTTCCCTTTTGGTAAA--TATACAGTCTGAGTTTCATAGAGCATGGCAGAAGTTGAGAATTAGAAGGC----AATGAAGTAATATTTAAAACAAAATCTGAATGATGATAAGTTACCAGG----TTGAATGTCTGATGATGACTGAGGTCAACAGTGGTATCAG---ATGTGGTAGAGAATGAATT-TTAAGTCACCTTTTAACTGCTGCCCTTTAGCTACACTAAGGTTGTGTCAGCTTATGAAAAGGTAGCTTCTTGAGGTTTTC-TCATCTAATGGTGTTTACAGCTGGAAGAAGTCTGTCAAAAACATGAAATGCTTTTGCGTTAGttcattcattcattcagcttcatgcaagatattccactaggtactgaggatttcacagtgagcaaaacagaaaaaatcccaaagctttttagcttgtattctag---aaggaAGGATAG----AAAGGGTTGAGATTGACGTCAAGAACTTCTTGGCATCTCAATGTCAGGTTTGTGTGTATGTTTATAGCATGAATATATA----ATATACATGGACATGTATAACAGTGAGGGGATAAAGA a score=8930 s mm7.chr9_random 9741696 337 + 9745104 ATTTCATCCTATGTCTTCTAATTTTGAAATGGATTGTAAATGTTTAGGAAATATATTAAGAAGCTTTCAATGAATGGAT-CTTAAAATAATTA---TATTAAGTAATATACTTTAAGCATGTTCACATCTATAATATTTCTCTTATATACCAAA-TCCTTAAGTTTTAAATGACATTCAATAGGCATATATTTGCATAGAAATTTGCCTTTTGACTTT--TTATGACCCAAATAATTAATTTGCAGTTCCAGAATATCACTGAAATTTTGA-AACTTTCTTTTTAACTCCACCAAGGGAAATGAGGACAATGATAAGTACCTTTAAAGAAATTTTCTTTCTCAAA s bosTau2.scaffold4257 58759 339 - 68296 ATTTTGTCCTAATTCTCCTAATTAGGAACTGGCTCATGTTTATCGAAGACTAATCCTAAGAAGCATATAGAGGACAGATACTTATGATAAATAATCTACTAAATGGTATAGCATTTGAACTTTCAAATCTATAATCTTCCTCATATCTACCAAAGTTATTCACTTTGGAATAACTCTAAATCAG------TTTACATAGAAATTTACCTCATGACTTTAATTTTAATCCAATTCATTAATTTAATGCTTTAGAATACCACTACTATTTCCATAATTCTTTCCTGAAGTCTCTCTAGGGAACCAATGTAAAAGAAAAATAAATTTAAGAAAATTTGCTTCTTGAAA a score=4995 s mm7.chr9_random 9742057 243 + 9745104 CTTGGAAACA-------------------------------GACTGAATCAAATTCCCTGTACA---AGAAAGTGTCAGACAACCACCCTATTTACACTTTGATTTCTGTAATTGTTGTGAAGTCACCTAAGGGAAAAATTTGAAGGAAAGGGAGGA-ATTCTAATATTCTTGCTCATAAATTT-AAGTGAATGATTTGAACATTCATACACCCATTAAAAATCTATGAAAATATTGTCA-CCCGAAAGAGCTTGAATTCCTGCAAGATACATC----CTCAGT s bosTau2.scaffold4257 59373 283 - 68296 CTTGAAAGCATAAGGATGACTTACTGGTGGCAAAATCCTTAGAGTAAGCCAAGATCCCTCAACATCTAGGAGACATCAGAGAACCATCCCATAGCCCCTTTTCTTGTTCTTATTGCCACAGTGATAGAAAAGGAAAGGAGTTTTGGAGAAGTGACAACATTCTAACATTCTTGCTTATAAATGTGAAAAGAATATTTTCGATATTCATAGATTCAATAAAA-TTTCTTAAAACACTTCCAGCCAGTAAGAGTTTGAATTACTACAAATTATTTCAGGACTCAGT a score=9742 s mm7.chr9_random 9743657 805 + 9745104 AAAACCCATCAACCCTTGCTATGCTGTTCATTATGTTAGGACTCT-GTAATGTCTATCACAGACACTAAAGTGACAAGATGACAGAGTGGGAAGCA---------TAGAGTACTAGCTGTCCAGAATAAGATCATATGACAATAAAATGTATAAAGAGGGAATG-GGTCTAGGCTTCCAATGGGAACAAAAGCTAAGGAAGAGCA----GAAAGGAGAGCTCTGTTCTCTGCCT--ATCAATCACTGTATTTAT---------GAGCAAATTTCTATTCTCTTCAACCATGA-AGCACCATTCTCTTTTGAGGACCTATAAAGCAT--TAGATGTATTTTAATCTCCAGAGT-GAGAGGATTTTCACTCTGTGTTTCATAGTCCTTCAGACACTGGGTAGCTAACATTAACATAATA---CTATATAATTCTCAGTGAAGGTTTACTTGGCTAGGTTGTCTTATGAAAGTGTTTAAAATCAGAAAATGTTAGTCTAGATAACC-------------TATCTGAAAAGG---ATGAAGAATAAATGGT----------------------TTGGTTGGTAGATGTATAATTTCAGAAGTAGGAGATCACATCA---------TTTTAGGCTTCTTAG----------CAGTAAAT-TAAGCATTCAA--TCCTTAAGGCATTCAAAGATTTAAACAACTTTCATGGCTCATGGATATC------ACTGTCAAAACAGAGAAAGGTAAATATTAATCAT--AAATTCTTAATACTAT------GATTAAATACACTTTTTAATGCCAAAACCCAGTTTGCTTCTATGAAGACAGAAGGGATATTCTTTTTACTAATGGAATTAGTTGAGAAGATTTGAATTTACTTGCA------ATTTTCTCTGTTATAATTTTGTTAG s bosTau2.scaffold4257 59746 893 - 68296 AAAAGCCCTCAAATTCTCATATGTTATTCATCTTTCTAGGCCTGTCATCAAATTTGTCACAAATCT--AAGAAACAGGATGACAGAAGTATAAGCAGTGTCCAAATATATCAGCAGCTGTCAGGCACAAGAAAATATGATGATGTAATATA-GAAGAGGGGATGTGGGCTAGCCTTCAAGCTGCAGAGACAG--GAGGTAGAGCCTGGTGAAAGAAATATTAAATCCTGCGTCTCAGTTTATGACCATGATTGCCAAGGCAGACAGGAAGAATCTATTTTCTGCCTTGGTGCTAGCATCACTCATTTCTGAAGTTTGATAGAGTCTGGCAGGTATGTTCTGATTTTCAGAATAAAGAAGGGTTTCA---TGCATTTA--AGTTATATAAATGATGAAGTGCCATCAGTGTCCTAATATTTTTATATAGTTCATATAATCAGTTTCTTTCGTTGGAATCTGTTAGCCTACTGAATTAGATACAAAAGTGTTAGTGTGGACAAACCCATCAACAAATATATATATAAAGACTTCTGATGAATAAAAGATTAGAAGAACACCAAGATCCATATTATGTGATAGATAAACAATTTCAACAGTGAGAGTCCTTGTAAGTAATCAGCTGTAAGACTTCCCAGACACCACTTTCAGAAGACACATGCATTTCAGGTTCTTAAGACATTGGAAA-----------TTTCATGGCTGATAGGGATTATGGTGATTGTCAGAATAGAGAAGATTAGATATTAACCATAGAAAGTTTGAATATTATGCCATGGATTCAGCATACTTTCT-CTTTTAAAGTTCAATTTGATTCTCTGTGTAGAGAGGAAGTAGGAATTTTATTATTGGAAT---CTAAAAAGAATTGATTTTATTAATATTTAGGATTATATTCATCATGATTTCATTGG