LOCUS       NC_008320               6499 bp    DNA     circular BCT 04-SEP-2006
DEFINITION  Shewanella sp. MR-7 plasmid1, complete sequence.
ACCESSION   NC_008320
VERSION     NC_008320.1  GI:113951722
KEYWORDS    .
SOURCE      Shewanella sp. MR-7
  ORGANISM  Shewanella sp. MR-7
            Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
            Shewanellaceae; Shewanella.
REFERENCE   1  (bases 1 to 6499)
  AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
            del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
            Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
            Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
            Mikhailova,N., Nealson,K., Konstantinidis,K., Klappenbach,J.,
            Tiedje,J. and Richardson,P.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Complete sequence of Plasmid1 of Shewanella sp. MR-7
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6499)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-SEP-2006) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 6499)
  AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
            del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
            Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
            Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
            Mikhailova,N., Nealson,K., Konstantinidis,K., Klappenbach,J.,
            Tiedje,J. and Richardson,P.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2006) US DOE Joint Genome Institute, 2800
            Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CP000445.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 4000370
            Source DNA and bacteria available from James Tiedje
            (tiedjej@msu.edu)
            Contacts: James Tiedje (tiedjej@msu.edu)
                      Paul Richardson (microbes@cuba.jgi-psf.org)
            Quality assurance done by JGI-Stanford
            Annotation done by JGI-ORNL and JGI-PGF
            Finishing done by JGI-LLNL
            Finished microbial genomes have been curated to close all gaps with
            greater than 98% coverage of at least two independent clones. Each
            base pair has a minimum q (quality) value of 30 and the total error
            rate is less than one per 50000.
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6499
                     /organism="Shewanella sp. MR-7"
                     /mol_type="genomic DNA"
                     /strain="MR-7"
                     /db_xref="taxon:60481"
                     /plasmid="Plasmid1"
     gene            912..1604
                     /locus_tag="Shewmr7_4036"
                     /db_xref="GeneID:4250551"
     CDS             912..1604
                     /locus_tag="Shewmr7_4036"
                     /note="PFAM: initiator RepB protein
                     KEGG: gka:GKP02 replication initiator protein"
                     /codon_start=1
                     /transl_table=11
                     /product="initiator RepB protein"
                     /protein_id="YP_732132.1"
                     /db_xref="InterPro:IPR000525"
                     /db_xref="GI:113951723"
                     /db_xref="GeneID:4250551"
                     /translation="MNSKLTVTKSNLLIDASYRLNVQAQKLVLACLSKIDSRPDSEPK
                     KEIKLTAIEFSELMGIDIKNAHRELYKAADALFKSSILLRNEHEETELYWIQKKVKKL
                     RGEGAVTLVWSDEVLRYICQLKSHFTSYKLRNIASLQSGHSIRLYELLMRFNATNSRV
                     IALDDFRSALGLEEKYPQFKELNKFVIKFAVEELNQRSDLVITYETLKKGRTVTALAF
                     TFKQNKQLKMDL"
     gene            1638..2108
                     /locus_tag="Shewmr7_4037"
                     /db_xref="GeneID:4250552"
     CDS             1638..2108
                     /locus_tag="Shewmr7_4037"
                     /note="KEGG: cps:CPS_0716 hypothetical protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_732133.1"
                     /db_xref="GI:113951724"
                     /db_xref="GeneID:4250552"
                     /translation="MARKWMQHMAKLNLSQAAKAVGKNRVTLWRHINTGKLSAERDRD
                     GNPLVDTSELIRVYGEIKQPATPRNTKKQHYTTPSYDELLLLIKELKSEQSEMKEIIL
                     DLKNRLEYKPTNSPNEDEKVTNSIAEDDPEWPQEVSSFADILLRNKIKLRYRNK"
     gene            complement(2121..2582)
                     /locus_tag="Shewmr7_4038"
                     /db_xref="GeneID:4250553"
     CDS             complement(2121..2582)
                     /locus_tag="Shewmr7_4038"
                     /note="KEGG: rme:Rmet_6065 hypothetical protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_732134.1"
                     /db_xref="GI:113951725"
                     /db_xref="GeneID:4250553"
                     /translation="MGSFDWVALAAFIFSVYNMYRGRQFARKQEDLTDVKNALSKVQL
                     QLEKIRVLEMYKADFGARFVKEGTSKKLVITNKGKAEARNVTLTFTEGPYFVINQEVS
                     SKFPMTSMDSMSSVRLLATSSLERTEVKEKFVVGWVDDSGVHNKTFDIPVY"
     gene            complement(2584..2859)
                     /locus_tag="Shewmr7_4039"
                     /db_xref="GeneID:4250554"
     CDS             complement(2584..2859)
                     /locus_tag="Shewmr7_4039"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_732135.1"
                     /db_xref="GI:113951726"
                     /db_xref="GeneID:4250554"
                     /translation="MNNIVTQVALLCPICGNELFHGNEDSEGFIACSDCGHECTNDEL
                     IADNSELIDEELKVSLGKAKKNLEDQMFKSLQRAFKGSKNIKIKRGR"
     gene            complement(3743..4039)
                     /locus_tag="Shewmr7_4040"
                     /db_xref="GeneID:4250555"
     CDS             complement(3743..4039)
                     /locus_tag="Shewmr7_4040"
                     /note="TIGRFAM: addiction module antidote protein, HigA
                     family
                     PFAM: helix-turn-helix domain protein
                     KEGG: son:SOA0023 proteic killer suppressor protein"
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid maintenance system antidote protein, XRE
                     family"
                     /protein_id="YP_732136.1"
                     /db_xref="InterPro:IPR001387"
                     /db_xref="InterPro:IPR013430"
                     /db_xref="GI:113951727"
                     /db_xref="GeneID:4250555"
                     /translation="MKSTRKPAHPGMFFKREVLEERGISVTDAAEYLGITRKALSEFV
                     NGKAKCSHAMARRLAESTGTGVAFWINMQAKLDTWEAENMEVENVSLMPTVKVA"
     gene            complement(4089..4394)
                     /locus_tag="Shewmr7_4041"
                     /db_xref="GeneID:4250556"
     CDS             complement(4089..4394)
                     /locus_tag="Shewmr7_4041"
                     /note="PFAM: plasmid maintenance system killer
                     KEGG: son:SOA0022 proteic killer active protein"
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid maintenance system killer"
                     /protein_id="YP_732137.1"
                     /db_xref="InterPro:IPR007711"
                     /db_xref="GI:113951728"
                     /db_xref="GeneID:4250556"
                     /translation="MTIKNFRDKRLKKFFCDNDESGLNPDHIVKIGDALDAIDSSHHP
                     RDLKAIYQRKFSEKKGSGEGVYSIEINGNWRITFQVEDDGAILLDYVDYHGKAIKSR"
     gene            complement(4956..5255)
                     /locus_tag="Shewmr7_4042"
                     /db_xref="GeneID:4250557"
     CDS             complement(4956..5255)
                     /locus_tag="Shewmr7_4042"
                     /note="KEGG: son:SOA0173 hypothetical protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_732138.1"
                     /db_xref="GI:113951729"
                     /db_xref="GeneID:4250557"
                     /translation="MYLENVTQTRAIEMTETSKNQHGGARPGAGRKTKYEKTVVMRVP
                     EKYQDAIKALIAHLDETAYIDGHYRNGHASEPVFLRSLDDNAQHVTFTTKPVLKK"
     gene            complement(5454..6317)
                     /locus_tag="Shewmr7_4043"
                     /db_xref="GeneID:4250558"
     CDS             complement(5454..6317)
                     /locus_tag="Shewmr7_4043"
                     /note="KEGG: noc:Noc_0627 putative integrase"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integrase"
                     /protein_id="YP_732139.1"
                     /db_xref="GI:113951730"
                     /db_xref="GeneID:4250558"
                     /translation="MASDFMYGCNQVLKHNRDGSFATQTDRRRTLALVDRQLQELGVK
                     KLKLKNIGARHVDALLHRWQQEGLSAGTIKNRMAHLRWVSEKIGKNGVISRNNDTLGI
                     DARQYVSNRDLSSQLDLERLKLVCDERLQVSFQLQQLFGLRREECMKLQPNVADRGDV
                     LHLDKTKGNRPRDIPVRTPEQRALLDRAKLLAGGGSLIPPDLKYVEQLNRYKTACIRM
                     GLNKAHGLRHGYAQQRYLELTGRQCAACGGLERREMSPDMRQTDREARQLITEELGHT
                     RDEITSVYLGR"
ORIGIN      
        1 ttcaggtttt agtaattccc acacaattga gcacactgtt gcggctgcag attggtatca
       61 gttaggagac attgaaacag cgcctgttgg cgtggtttct ataaaaatgt atgtgatgaa
      121 ttatctattt tgtgctcaat ggagcggcga gtaagccttg atattaacac tggtgatcgt
      181 gggtatcaat aaccccgtcg tcacgtgtta gctacgagaa aaaaagggtg gggtgggttc
      241 atatcacaag tattggctcg ttctgtcact gtcagcaagt cgccagtgac agaacgagcc
      301 cccacccttt tttgctcctc cctggttcag ctcgacagac ttcctagtcg aacctcacca
      361 gggaggtttg attaagttac aaattcaagt ctattccctg ctagaccgga gcgaagcgac
      421 cgctttttaa cggaacctgc cgcaccttgg cggctagacg gtcggagaca aaaccagctt
      481 gcagcgcggc gttagtctcg cccctagcga agctaggaag tggcgaggca ttttagggga
      541 agggtggagc ctttaggcga ccttggggcg cagccccgtg gtcgcggcgc agccgctatc
      601 ttttcgttta ggtggccaga tttacgatgg ttatccacag gcgaagccct ttttaataga
      661 tctttcttgt ttttatagat ctttcttgtt tttaagctcc tcgctaaccc ttggtgtatt
      721 tgagctgtag cgatcgtagg tggtgggatt tacggtgaaa atggctctaa aggtggtggg
      781 atttacggtg aaaatagctc taaaggtggt gggatttacg gtgtaatcaa caggtttaag
      841 tggtactgat tgacaatcga taccacttat aattatggtg gtatcaaata tagttgagca
      901 ccaccataaa gatgaattct aaactaacag taacaaaatc aaatcttctc attgatgcca
      961 gttacaggct gaatgtacag gctcaaaagt tggtgctagc ttgcctttct aagatcgatt
     1021 cgcgcccaga ttcagaacct aaaaaagaga taaaactcac cgcaattgag ttctctgaac
     1081 taatggggat tgatataaaa aatgctcaca gggagctata caaagccgct gatgcccttt
     1141 ttaaatcgag cattttatta cgtaatgaac atgaagaaac tgaactttac tggattcaaa
     1201 agaaagtcaa aaaactgcgc ggagaagggg ctgtaacgct ggtatggtca gatgaagttt
     1261 tacgttatat ttgccagcta aaatcgcact tcacctccta caaactgcgt aatattgcta
     1321 gcttgcaatc agggcacagt attcgcctat acgagctact aatgcgtttt aacgctacca
     1381 atagtcgagt gattgcccta gacgatttcc gttcagcttt gggcctggaa gagaaatacc
     1441 ctcagttcaa agagctaaat aaattcgtta taaaatttgc cgttgaagag cttaatcaac
     1501 gtagtgactt ggttatcaca tacgagacgc tcaagaaagg acgaacagtg acagcgttag
     1561 cttttacatt caaacaaaac aagcaactga aaatggattt ataatccagc tgcaacacat
     1621 gcaacaccag cggcccattg gccagaaaat ggatgcaaca catggcgaag ttaaatttaa
     1681 gtcaagccgc caaagccgtt ggcaaaaaca gagtcacact ttggcggcat atcaatactg
     1741 gtaagctttc tgctgagcga gatagggacg gaaacccatt agttgatacg tctgaattaa
     1801 tccgtgttta tggagagatc aaacaacctg caacaccgcg aaacactaaa aagcaacact
     1861 acacaacacc ttcttacgat gagcttttac tactaataaa agaactaaaa tcagaacaat
     1921 ctgagatgaa agaaatcatc ctcgatttga agaatagact tgaatataaa ccgactaact
     1981 cccctaatga agatgaaaaa gttacaaatt caattgcaga agacgatcct gaatggccgc
     2041 aagaagtcag ctccttcgca gacattctac tcagaaataa aattaagctg aggtacagaa
     2101 ataagtgatg tggtgaggta tcagtagact ggaatatcga atgttttatt atgaactccg
     2161 gaatcatcta cccatccaac aacgaatttc tcttttacct cagttctttc tagtgaacta
     2221 gtagccagca aacgcacact actcatagag tccatagatg tcatggggaa tttcgagcta
     2281 acctcttgat taattacaaa atatggccct tcagtaaaag taagggtaac atttcttgct
     2341 tcagctttcc ctttgttggt tataacaagc ttttttgaag tgccctcttt gacaaaacga
     2401 gcgccaaagt cagctttata catttcaaga acgcgaattt tttcaagctg cagctgtact
     2461 ttgctcagtg cgttttttac gtccgttaaa tcttcctgtt ttctagcaaa ctgacgccca
     2521 cgatacatgt tgtatacact aaagataaat gcagctaatg ccacccaatc aaagcttccc
     2581 aattcagcgg cccctcttaa ttttaatatt tttacttcct ttaaacgctc tctgtaaaga
     2641 cttaaacatt tgatcttcta aatttttttt agcctttcct aacgacacct taagttcttc
     2701 atcgattagc tcagagttgt ctgcaatcaa ttcgtcattg gtgcattcat ggccgcaatc
     2761 gctacatgca ataaagcctt cactatcttc attgccatga aaaagctcat taccacaaat
     2821 tgggcataac aacgccactt gagtcactat attattcatt cagcactcca aaagtagatg
     2881 ccatttctga ctactatttg atttacaatt tccagagttc aaaaaacaac ccaactttta
     2941 aattcacctt caaaaaacag gtgcgcccaa gagtcattat gttaaatcaa tgactttagg
     3001 tgtgtttttg ccggcttagt gacataaaac aggaaagaag gccgaataat cttcttatcc
     3061 tccccagaaa agtgggattg gggctgaaat attatttcag aaaaaaaact aagacagact
     3121 tggaaaacac caaattgcgt aaatggctta atcgccgcgt aagccgcaaa aaactaagtt
     3181 tactgccgct aaatgtgagg tgttgatatc accaacacct caccacatta cctagcgctt
     3241 aggggtagag cggcagtgct cacgaacgcg ctcccaacgc ccaaaacgac ggcgaaggta
     3301 agtgtttacg tgcacagggc tcaggatagg gcacatcaac atgtgtcacc tccataaagt
     3361 gcattcttat aacttgcgct aagaatctgc acttcctata ctctacgctc ctcgccaaag
     3421 gaaacttaga gttagaagtg cggaacagtt tccgcataaa ctgctcgatc ccagttttgg
     3481 gggtgaatgt tcttagcatt cactttccaa aactgcgccc cactatcttc acggttattc
     3541 atcaattctc tattccaatt tctccttttc tatttattat gtaaaacatt aagtacaatc
     3601 ttttaaaaac actacatata gtagctcatc tctaaaaaaa caccacatat agtgttatcg
     3661 ttataaaaat actacatgtt gtttttctaa tttttgctct ataaatgaaa aagccgacca
     3721 ttattggtcg gctttttcac ttctatgcca ccttcacagt tggcattaat gacacgttct
     3781 caacttccat attttctgct tcccaagtat ccagtttagc ctgcatgttt atccaaaaag
     3841 caacaccggt tccggtagac tcagctaggc gtcgagccat tgcatgagaa cattttgcct
     3901 ttccattcac aaactcactc agtgctttcc tggtaattcc aaggtattca gctgcgtcag
     3961 taacagagat acccctctct tccaaaactt ctcttttaaa gaacatgcca ggatgagctg
     4021 gttttctcgt tgatttcata actaactcct caaaacgcct acaacataaa agcgttcata
     4081 gatggagatc atcgagattt aatggctttg ccgtgatagt caacgtagtc caacaaaatt
     4141 gcaccatcat cttctacctg gaatgtgatc cgccaattcc cattgatctc tattgagtat
     4201 acaccctcgc cagaaccctt cttctcagag aactttctct gatagatagc tttcaggtct
     4261 ctcggatgat gactcgaatc gatagcgtct aatgcatcgc caattttaac gatgtggtca
     4321 ggatttagac cgctttcgtc attatcacag aaaaacttct tcaggcgttt gtcgcgaaaa
     4381 tttttgatag tcaaaactgc ccccttgaaa aaccatccac ccacatcttt gggtggtttc
     4441 gataattaaa taatccatag ctcgctccag tcatggcaaa ttttatgtta ttaaaataat
     4501 taacccattt taatcaaacg gttatttgca tctgtgcagt attcagtcaa gggcagtaca
     4561 cagaatttgt ttaaatacat aactcatctg taattgctgc atcattccgt tatgcagcaa
     4621 aataatagta acccgacacg ttacacgtgt caactgctat aattaggttc acgaaagaat
     4681 acatatgctc tggaggtggc gactatctgt cgcctaaagt cgttattgaa ttgtcacgac
     4741 accatttttg acagcatcat ctttctccag cttgattaac aagatctgaa gactctcaaa
     4801 atactgttca actgcagaag aaactatttt ttctgacatc atttcaggcg agaaaaattc
     4861 ctctacaagc gcctgaacct ctgccgtttc gccatgttca tggagcaatt cgctaaattc
     4921 ttcctgctct aaaatgccac tcatatttga ttccgttact ttttcaaaac tggtttcgtg
     4981 gtgaaagtga cgtgctgcgc gttgtcatcg agagagcgca gaaatacagg ctctgaggcg
     5041 tgcccgttcc ggtagtgacc atcgatgtat gcagtctcgt ccaaatgcgc gattaacgct
     5101 ttaatggcgt cctgatattt ctctggaacc cgcatgacta ctgtcttttc gtatttggtt
     5161 ttgcgtcccg caccagggcg agcgccgcca tgttggtttt tgcttgtttc tgtcatttcg
     5221 atagctcttg tttgtgttac gttttcaaga tacattgaag ctattcacca tgcaacaaca
     5281 ggtggttcct atgagaatcg ttctgctagt tatcacgttt atcatcccgt ttagcgccat
     5341 ttttggggca gtttttagcg tgattcagtt agagaatttt gggctaatag cttcacccct
     5401 ggcactgatt gcggcactcg gttacttcta ccttgaaaac caacgccaag gcgttaacgg
     5461 ccaaggtaaa cggacgtaat ttcgtctcgt gtgtgcccca attcttcggt gatcagttgc
     5521 cgcgcctctc ggtctgtttg ccgcatatct ggcgacattt ccctacgctc caagccacca
     5581 caggccgcac attgacggcc tgttagttcc aaataacgct gctgcgcgta gccatgccgt
     5641 aatccgtggg ccttgttcaa tcccatccga atacaggcgg ttttatagcg atttagctgc
     5701 tcaacgtatt tcagatctgg cgggatcaaa gatccgcctc cggccagcaa ttttgcccta
     5761 tccagtaacg cccgttgttc cggtgtccgg accggaatat ctcgcggccg attgcccttg
     5821 gttttatcta aatgcagtac atcgccgcga tcggccacat tgggttgtaa cttcatgcac
     5881 tcttcacgcc gcagcccgaa aagttgctgc aattggaaag acacctgcag ccgttcatcg
     5941 caaacgagtt ttaaccgctc taaatcgagc tgagagctga gatctctatt tgacacatac
     6001 tgacgggcat ctattcctaa agtatcgtta tttcgagaaa taacgccatt cttaccgatt
     6061 ttctcagaca cccagcgaag atgagccatg cgatttttga ttgtgccggc actgagtcct
     6121 tcttgctgcc acctgtgcaa caacgcatct acgtgccgag cgccaatatt tttgagtttg
     6181 agcttcttca cgcccaattc ctgcaactgg cgatcgacca gcgcgagcgt tcggcgcctg
     6241 tcagtttgag ttgcaaagga accatcacgg ttatgtttca gcacttgatt acaaccatac
     6301 atgaaatctg aggccatctt ttcccacctt tttaaaacaa aaaagccctg cggttgcagg
     6361 gcttattcat ggatattcaa tggtctggaa actggtcaga agaacatgat tcgattgatt
     6421 agtgtaattc cgcacctgcg ttttagacac aggtatccct tgaaaaagtt acattttcaa
     6481 gaaatgaaag cggtagatc
//
