LOCUS       NC_008389               5824 bp    DNA     circular BCT 26-JAN-2007
DEFINITION  Roseobacter denitrificans plasmid pTB4, complete sequence.
ACCESSION   NC_008389
VERSION     NC_008389.1  GI:115345712
KEYWORDS    HTG.
SOURCE      Roseobacter denitrificans OCh 114
  ORGANISM  Roseobacter denitrificans OCh 114
            Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
            Rhodobacteraceae; Roseobacter.
REFERENCE   1  (bases 1 to 5824)
  AUTHORS   Swingley,W.D., Sadekar,S., Mastrian,S.D., Matthies,H.J., Hao,J.,
            Ramos,H., Acharya,C.R., Conrad,A.L., Taylor,H.L., Dejesa,L.C.,
            Shah,M.K., O'huallachain,M.E., Lince,M.T., Blankenship,R.E.,
            Beatty,J.T. and Touchman,J.W.
  TITLE     The Complete Genome Sequence of Roseobacter denitrificans Reveals a
            Mixotrophic Rather than Photosynthetic Metabolism
  JOURNAL   J. Bacteriol. 189 (3), 683-690 (2007)
   PUBMED   17098896
REFERENCE   2  (bases 1 to 5824)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2006) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 5824)
  AUTHORS   Touchman,J.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JUL-2006) DNA Sequencing Center, Translational
            Genomics Research Institute, 445 N. Fifth Street, Phoenix, AZ
            85004, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CP000467.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5824
                     /organism="Roseobacter denitrificans OCh 114"
                     /mol_type="genomic DNA"
                     /strain="OCh 114"
                     /db_xref="taxon:375451"
                     /plasmid="pTB4"
                     /note="type strain of Roseobacter denitrificans"
     gene            complement(838..936)
                     /locus_tag="RD1_D0001"
                     /db_xref="GeneID:4312109"
     CDS             complement(838..936)
                     /locus_tag="RD1_D0001"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_771890.1"
                     /db_xref="GI:115345713"
                     /db_xref="GeneID:4312109"
                     /translation="MIGIFRPSLQLHHDDMRTHAPDALVSHRCASF"
     gene            983..1570
                     /locus_tag="RD1_D0002"
                     /db_xref="GeneID:4312110"
     CDS             983..1570
                     /locus_tag="RD1_D0002"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase, putative"
                     /protein_id="YP_771891.1"
                     /db_xref="GI:115345714"
                     /db_xref="GeneID:4312110"
                     /translation="MRSAHLSFRQDVWPDGLTYLENYISEDEAGRLVQEIDAALWRTD
                     LKRRVQHYGYRYDYKARQAWREDYLGPLPELFQSLAERLTAEGHFQTVPDQVIVNEYQ
                     PGQGISAHIDCQPCFGETIASLSLLSACVMRFASRIYSQQMELHLQPSSLLVLQSDAR
                     HLWTHAIPPRKTDVFEGQKYARARRISLTFRTMKF"
     gene            1855..2859
                     /locus_tag="RD1_D0003"
                     /db_xref="GeneID:4312111"
     CDS             1855..2859
                     /locus_tag="RD1_D0003"
                     /codon_start=1
                     /transl_table=11
                     /product="RepA"
                     /protein_id="YP_771892.1"
                     /db_xref="GI:115345715"
                     /db_xref="GeneID:4312111"
                     /translation="MSLLPDRHPQKDFFILDIADVVPKDDTASMEHPLFSLATKPDMR
                     HLVYQNGENRLEIAPSILGLPTIKDKDILIFCISQLMHMKNRGEKIGKRVRFSARELS
                     IATNRPVGGDHYKRLEQAFKRLQGTQFTTTIRTGKKPGVKIFSLVDQAGFVMQEDTWR
                     LDYCEVVLSDWLMRAIEANEVVTITNDYFRLRRPLERRIYEIARKHCGEQKKWQIGLA
                     NLQNKTGSNAPLKKFRLNIRQIISDDHMPFYRMELTSDDLVIFRPRKAKTTLAPSITL
                     PDWAEEKARGIARDKGWDYHALRAKWMEFAQDEAGKGNPPQNAGAAFVAYCQKQQSVR
                     "
     gene            2663..3529
                     /locus_tag="RD1_D0004"
                     /db_xref="GeneID:4312112"
     CDS             2663..3529
                     /locus_tag="RD1_D0004"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_771893.1"
                     /db_xref="GI:115345716"
                     /db_xref="GeneID:4312112"
                     /translation="MRLPSPCQTGPRKRPAGSRGIRAGTITLSAPNGWNSPRTRLAKG
                     TRPRTQARPLWPTARNNSRLGKMAFEIKTITDTWQSVSANRSFVHPSDERALTQSTAK
                     FSQGRVPEPWFGNPRLARIFVLTLNPGHGKADDNHSTATQDFFWSMMDCKADYSDYLS
                     GVSQDGLNWGRRHYGSFLERSMSAICNLRLVAYPSPDKAATGNISAAPADVLPTARLM
                     RDFVHNSLAPAARNGDCLLLVMRSPQAWGFGNPDADSWDNGLFVSRSLRTASITPSSR
                     VGPAIQEWLAKV"
     gene            complement(4109..4621)
                     /locus_tag="RD1_D0005"
                     /db_xref="GeneID:4312113"
     CDS             complement(4109..4621)
                     /locus_tag="RD1_D0005"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_771894.1"
                     /db_xref="GI:115345717"
                     /db_xref="GeneID:4312113"
                     /translation="MSAVGQNFPSQHFVDPALPPRTRGLELGDDLLVQPDRHGYLWVC
                     RPGAPADVLAHFLGESGKGLRERPSLRHLRVRDLRRIRITGDQLLNPGLFGIGDWRVL
                     LVRHSRLLSLRLAGRIEITETPSVPRRAKTTAMVPSSRRPIAMWRPSFAGTVTASRKN
                     HSSRSAKSSP"
     gene            4784..5047
                     /locus_tag="RD1_D0006"
                     /db_xref="GeneID:4312021"
     CDS             4784..5047
                     /locus_tag="RD1_D0006"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_771895.1"
                     /db_xref="GI:115345718"
                     /db_xref="GeneID:4312021"
                     /translation="MPDLCVIRFVERKRLPPVLGIVHPPGDLRDVVAHLVERTLHRME
                     RLGQLGIRRGHTSHIPDDIAQRFTSVSNAGLFQLLIEQRQIRR"
ORIGIN      
        1 tacgcgaaac cggccatcta tcggcaatcg tcaatcagta catggcgcaa gtcgaaatcc
       61 gactaaagaa ccagcttgcc cgcgtcgcaa gagccaaacg caatggccgg atcactgaca
      121 cattttacaa cagctatggc atgaccaatg tcgttttcag tatcggcgat acagtgatcg
      181 gcggcgaatt ttcaggtagc gtagaagaac agcatggtgt cctgagcatg gaaggctcgt
      241 ttgatttcta cttgcgggac gagtttgccg accctgccga cataggcgtt gaggtgatcg
      301 atccaggcga gacaatcttt gagaacatcc acagacctct cgataattat ctcagaggac
      361 gcaccggcct tgcgccgcgt ggcccccaac ggcttggtgt tcaaaccggt gagccgtatt
      421 cgataactga cgattggtca ggaacgctga gcgggcaaat atacttggat cctgcgcgaa
      481 gtgcctatgg atagcttccg ccctcctttg gcagtcggaa tggtagctgc agtttttgca
      541 ttggggttct tctggggggt tccgacgcac tgcgtgcagc ttcccaacgg attgaacatc
      601 ggcaaacaag ctctgctcga tctgaaccga ccatatttca gaccagacat tgttcctaag
      661 tttgacaacg ggcaatcgct gttacctgga gacgcctggc cgttctacgc cacagaaaca
      721 acagttcacg ggctcgcgct agaagccgat cctgaagatg atttctggtt tgcatggcga
      781 gaagacacag gtctggtgct caaagctgaa gatccggcgc tttacgagag actcgtttca
      841 gaagctggca caccgatggg aaacaagggc atcaggggcg tgggttctca tatcgtcatg
      901 atggagctgc aaagacggcc ggaatatgcc aatcaaacct gtcggacgcg gtggatagtc
      961 gttggcacag gggggcttta gtttgcggtc agcccacctc tcatttcgtc aggatgtatg
     1021 gccggacggg ctgacctacc tggaaaatta catctcggag gatgaagcgg gcaggctcgt
     1081 ccaggagatc gacgcggccc tctggcgcac cgatctgaaa cggcgggtcc agcattacgg
     1141 ctatcgttac gactacaagg cgcggcaagc ctggcgggaa gattatcttg gaccgttgcc
     1201 cgagctgttc cagagccttg cggaacggct gactgcagaa ggtcatttcc aaaccgtccc
     1261 agaccaggtc atcgtcaacg aatatcagcc cggacagggc atctctgccc atatcgactg
     1321 ccagccgtgc tttggagaga caatcgcctc cctgagcctt ctctccgcct gtgtgatgcg
     1381 gtttgcctct cggatttatt ctcagcaaat ggaactacat ctccaacctt cgagtctgtt
     1441 ggttttgcag agtgatgctc gccatctgtg gacccatgcc atcccgccca gaaagacgga
     1501 tgtctttgag ggtcaaaagt atgcccgtgc tcgacgcatc tcactgacgt ttcggacgat
     1561 gaagttttaa aacccttagt gttaatagtg ttacctacgg agtagtgtta cgggccaaaa
     1621 aatcagccct aaccatatga tctaaaaaca ggaaaccatc cacagggttc cgaaagggcc
     1681 aaacttgggt tccgaaaggg ccaaacttgg gttccgaaag ggccaaacgg aaaatcagct
     1741 gaaacggttc ctgaagggcc aaacttgggt tcccgatgta aagaacctca gatcggttcc
     1801 tgatcggcca aatttatggt tcctgatcgg ccaaacattt tgtagcattc ggacatgtca
     1861 ctgctacccg atagacaccc tcagaaagac ttctttatcc tcgatatcgc tgatgtcgtt
     1921 cccaaggatg ataccgcctc gatggagcac cccttgttct ccctcgcgac caaaccggac
     1981 atgcggcacc tggtctatca gaacggcgag aataggctgg agatcgcacc ttccatcctg
     2041 ggactgccaa ccatcaagga caaagacatc ctgatcttct gcatcagcca gctgatgcac
     2101 atgaagaacc ggggagagaa gatcggaaaa cgcgttcgtt tctccgcgcg tgagttgtcc
     2161 attgccacga accggcccgt tggcggggac cattacaagc ggctggagca ggccttcaag
     2221 cggctgcaag gcacgcaatt taccaccacg atccgcaccg gaaaaaagcc cggtgttaag
     2281 attttcagtc tcgtcgacca ggcaggcttc gtgatgcagg aggacacatg gcggctcgac
     2341 tattgcgagg tggttctgtc tgactggctc atgcgcgcga tcgaagccaa cgaggtcgtg
     2401 acaatcacca acgactattt ccgcctacgt cgcccgctgg aacggcgcat ctacgagatc
     2461 gcccgcaaac actgcggcga gcagaagaag tggcaaatcg gcctggccaa cctgcagaac
     2521 aagacaggca gcaacgcccc cctcaagaaa ttccgcctca acatccgcca aatcatctca
     2581 gacgatcaca tgccgttcta ccgcatggag ctaacgtcag atgatctggt gatcttccgc
     2641 ccccgcaagg caaagaccac gcttgcgcct tccatcaccc tgccagactg ggccgaggaa
     2701 aaggcccgcg ggatcgcgcg ggataagggc tgggactatc acgctctccg cgccaaatgg
     2761 atggaattcg cccaggacga ggctggcaaa gggaacccgc cccagaacgc aggcgcggcc
     2821 tttgtggcct actgccagaa acaacagtcg gttaggtaag atggcttttg agattaaaac
     2881 catcacagac acatggcaga gcgtctcggc caatagatct ttcgttcatc cctccgatga
     2941 gcgcgccctg acccaatcca cagcgaaatt ctctcaaggc cgcgtcccgg aaccatggtt
     3001 cggcaacccc agattggcac gcatatttgt tctgacgctc aacccaggac atggaaaagc
     3061 cgacgataat cacagcacgg caacgcagga tttcttctgg tcgatgatgg actgcaaggc
     3121 agattactcg gactacctga gcggcgtttc acaagatgga ctaaactggg gtagacgaca
     3181 ctacggtagc tttcttgagc ggtccatgtc tgcaatttgc aacttgcgcc tggttgcata
     3241 cccgagccct gataaggccg ctacgggcaa catttccgcc gctcccgcag acgttcttcc
     3301 cacagccagg ctcatgcgtg attttgttca caactcgctt gcccctgcag ctcgcaacgg
     3361 tgactgcttg ttgctcgtga tgcgttcacc acaagcctgg gggtttggaa acccagacgc
     3421 ggacagctgg gataatgggc tgttcgtctc tcgaagcctg aggactgcct cgatcacacc
     3481 atcttcgcgc gtgggtccgg cgatacagga atggctcgca aaggtttaag ccggtaacac
     3541 cggattaccc cccaaccaag cgcgcccaaa atcccttctt ccgggtgctc tgatcctcga
     3601 tcaacgccgt gatcttctga gcctggtctt tccagctatc ccgatcagct cgggtttcct
     3661 ccagcatctc acgcaatagc tcaacttcgc gctctaacgc actggtttca gaaggggttt
     3721 cacttcctaa cattgttcgg gttgcgccac tttcatctga aacggcgggc caaacccgaa
     3781 aaagctctga tgcttcgatg atccacccac caccgtcacg tggttctgcg gacaatttcc
     3841 ctttttttat ggctcttgtg atcgtcggaa cgctctttcc gactttcttc gctgcctgcg
     3901 atgcggatag tgacatgccc gttacctcac ccctttcaaa ccgtaaaaat gttagtttct
     3961 gaaagggtaa catctttaca cccccgtgta aaacctctcc atggtgcgcc tttcatgcga
     4021 tcttgacgaa ggattaagtt tttgtatata cataaactat gattactatc gtctgggatg
     4081 agccaaagcg gcaaaccaat ctggcaaatc atgggctgga cttcgcggac ctggatgagt
     4141 ggtttttcct cgaagccgtc accgttcccg caaaagaggg tcgccacatg gcaattggac
     4201 gtctggacga tgggaccatc gccgtagtct ttgcccttct ggggacagaa ggcgtctcgg
     4261 tgatctcaat gcgccctgca agccgcaagg aaaggagcct gctatgacgg acaagaagca
     4321 cacgccaatc tccgatgccg aagaggcccg gattcaaaag ctgatcgcca gtgatcctga
     4381 tgcgcctgag atcacggacg cgcaaatggc ggaggctagg ccgttcacgg aggcctttcc
     4441 cgctctcgcc gagaaaatgc gcaagaacgt cggcgggcgc cccaggtcgg caaacccaaa
     4501 ggtacccgtg tcgatccggc tggaccaaga ggtcgtcgcc aagctcaagg ccacgggtcc
     4561 tgggtggcag agccgggtca acgaaatgct gcgacgggaa gttctgaccg accgctgaca
     4621 agcctgcacc cgaccgcccc catatggcgg ggagggcgca ggcttagccc ccgcgcttgg
     4681 ccaggttctt caactcgtcc gaaatcttga gctcaagtga gctgcgccgc ccatcagcca
     4741 tcagtgcaac ctcgtccgca aagtcgagca ccattccggc caggtgccgg atctctgcgt
     4801 gatccgtttc gttgaacgga agcgactgcc cccggttctt ggcatcgttc atccgcctgg
     4861 cgatctgaga gacgttgttg cccaccttgt tgagcgcacc cttcatcgta tggagcgcct
     4921 cggccagctc ggcatccggc gcggccatac ctcccacatt ccggatgaca ttgcgcaacg
     4981 cttcacttcg gtttcgaacg ccggcctctt tcagcttctc atcgaacaac gccagatccg
     5041 caggtgacac acggcagacc acggtttccg tcctgctgcc ccgctcgatc tgtatctcgc
     5101 gcatgaactg ggcgcagcga tagaccgttc gcacggtaac gccatactcc cgtgccagaa
     5161 cgtccgggcg gacgccttca cgcaacttct tggcgatgga ttggcgggtt gtgtgatcta
     5221 gtctgcgggc catttgtcac aaatgtaata cgttgctatt tcctgccact ctcacacaac
     5281 cgaaatcaag ctctcaaggg gcaaacctct cggaaacggc tgtaagccct ctgaaggcgc
     5341 tgtgagggga tttcagggtg cgctgcatca acggggaacc cggcgaactc atggttaacg
     5401 atttctaaag cgctcaacag cacaaagatg tgctgaatga acaacctggc gcgcgaaatg
     5461 actctgatca atccgaatga gtatcgggaa gcctttgtgc aatatctgcg caagggaaca
     5521 ccgatccggt ttgagaccaa aaacgctcag gcaaccacgc attacatctg gcggacacga
     5581 cgcgacggta aagtgcgctt gtctcatgct gaacgcgaag gtcaggtttt cgcgtgggac
     5641 gatccgccgg aaggtggcca ccccggggaa gattatggat gccgctgcac ggcagaacca
     5701 tacctcccac agacctcgga attcatggaa atctccttgc agggcgtttc aggcggcggt
     5761 gccgcttgga gtggcaggga tttcgtgaac cactattacc aaggaaacgg tagaggcgtc
     5821 accg
//
