LOCUS       NC_001773               3444 bp    DNA     circular BCT 30-MAR-2006
DEFINITION  Pyrococcus abyssi GE5 plasmid pGT5, complete sequence.
ACCESSION   NC_001773
VERSION     NC_001773.1  GI:10954552
KEYWORDS    .
SOURCE      Pyrococcus abyssi GE5
  ORGANISM  Pyrococcus abyssi GE5
            Archaea; Euryarchaeota; Thermococci; Thermococcales;
            Thermococcaceae; Pyrococcus.
REFERENCE   1  (bases 1 to 3444)
  AUTHORS   Erauso,G., Marsin,S., Benbouzid-Rollet,N., Baucher,M.F.,
            Barbeyron,T., Zivanovic,Y., Prieur,D. and Forterre,P.
  TITLE     Sequence of plasmid pGT5 from the archaeon Pyrococcus abyssi:
            evidence for rolling-circle replication in a hyperthermophile
  JOURNAL   J. Bacteriol. 178 (11), 3232-3237 (1996)
   PUBMED   8655503
REFERENCE   2  (bases 1 to 3444)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2000) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3444)
  AUTHORS   Forterre,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-1996) Patrick Forterre, Institut de Genetique et
            Microbiologie, Universite Paris-Sud, Orsay 91405, France
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from U49503.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3444
                     /organism="Pyrococcus abyssi GE5"
                     /mol_type="genomic DNA"
                     /strain="GE5"
                     /db_xref="taxon:272844"
                     /plasmid="pGT5"
     rep_origin      1..114
                     /note="putative single-stranded origin; sso"
     repeat_region   22..68
                     /note="repeat region RI"
                     /rpt_type=inverted
     gene            103..2067
                     /locus_tag="pGT5_01"
                     /db_xref="GeneID:3648457"
     CDS             103..2067
                     /locus_tag="pGT5_01"
                     /note="ORF1; contains possible alternative initiation
                     site"
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiator protein"
                     /protein_id="YP_308887.1"
                     /db_xref="GI:74076684"
                     /db_xref="GeneID:3648457"
                     /translation="MVIYTSKFKNSLLDGLGVGHLSYDDQPILCNEVHPTLTLDTFIS
                     GGSSGSRPRPRWVYLDISTTNEGISEEFSSNTESKSPLLKVCGVSSKSSEGDGSSFIW
                     FDKYRSVISRLEHSGFVEVERTVLKLRKISKELRSINKQLSRLFLDDRERAKLLSRKR
                     KYLDFARALIGSISKSLTLYADRFFVEVPQDYAKLIQKLGFSSDTLLLHLFVNSGVLE
                     VFLDDNSSHKFRIAYISKVHAGKYHPVKGISKGSQEAKRVLRDLLVLSELLEGSLVSY
                     RSGGVETIHHLIPVRHFVLTAPKDVSFSIWASLKKGDSSLFRAFKDAGAKAIKEFLSY
                     LASKEHISGNLLFGFTINVHVTGDKNPFEPHFHIDAIVTFICYDKSSTKWFRLNPLLS
                     ESDLKKLRDIWKNVLLSYFGELLSEDTKSKDFDVWAGDNYYSLPLDVPQVFFELKYAS
                     RKLFVNFVNYFEQSNFDESSVSDWDFVRFVFEYSNRTERYGFLTNIKRYLSMSCSHLV
                     EKRVQELEEFISRIEFDLSVNGNKMSDSLKRALLERLEYLKDELSELKERGFEYLFER
                     ALEKAEELLSNDNLTLERVIHILETLFTALGKSIVNYNFYVELEDVSFREFVDYLYDN
                     HLSDVLVFSDRHRSITIIRLIPPPDGGVPV"
     rep_origin      266..280
                     /locus_tag="pGT5_01"
                     /note="putative double-stranded origin; dso; similar to
                     dso seequences from pC194 plasmids"
     repeat_region   550..607
                     /note="repeat region RII"
     repeat_region   2051..2123
                     /note="repeat region RIII"
                     /rpt_type=inverted
     gene            2230..3423
                     /locus_tag="pGT5_02"
                     /db_xref="GeneID:3648458"
     CDS             2230..3423
                     /locus_tag="pGT5_02"
                     /note="ORF2"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_308888.1"
                     /db_xref="GI:74076685"
                     /db_xref="GeneID:3648458"
                     /translation="MRLHVHINDKLGELFKKRVHLVYGDRRGALSHAIEEAIILWLLH
                     TDYIVKLQKVNAMSLQTQRIDSDSSHYLPISRLPQTIDEFRAFYNRFGAKATLLVYLL
                     VRGKPLRLYDLFRFHQAIAGVSSDNSTRKVLKRLLRDGLIYRKGKLYYPSPDALLLMW
                     DSIDWSRVRTKRYTGNGVVSKPSKRRVRGVGSQVRRVVRIARSLARRGDTLRAVSLLT
                     HTLLGVRQTGVLLYRKGGLFIVYEHKDRSVRVLFSERIGKLFDDLGLPEGSLYMHMYY
                     RAGRIIHNVFGGYRVARRMFYFLREHGFFYVPASEVDRVGEYRYDPHSGKLIVRIGNW
                     TYEVDADLDAIDSYVENLNSRRTRKSKKKSSSLVSYPRERFGIVRVSKHTKVENDVYY
                     LNYTP"
     repeat_region   2925..3207
                     /note="repeat region RIV"
ORIGIN      
        1 attatccttt agaaacgcgt tgggtattgg gggagccccc cttagtgggg agctccccct
       61 aaacaccccc aagacaatag gaaaccatag gaggcccctg caatggtgat atacacttca
      121 aagtttaaaa actctttgct tgatgggttg ggggttgggc accttagcta tgatgaccag
      181 cctattctat gtaatgaggt tcatccaacc cttaccctcg acactttcat ctcgggtggg
      241 tcatctggtt ctcgaccccg cccccgttgg gtttatcttg atatatccac aaccaatgaa
      301 ggaatttcag aagagttctc ttcaaatact gagagtaaaa gccctctatt gaaggtgtgt
      361 ggtgtcagtt ctaagtcatc tgagggtgat ggcagtagtt ttatctggtt tgataagtat
      421 cgttcagtca tttcaaggct tgagcactct ggttttgtag aagttgaaag aactgtcctt
      481 aagctcagga aaatctccaa agaactccgc tctataaaca agcagttatc gaggcttttc
      541 cttgatgata gggagagagc aaagcttctc tctcgcaagc gtaagtatct tgattttgct
      601 cgtgctctca taggttctat ttccaagtct cttactcttt atgcggatag gttctttgtt
      661 gaggttcccc aagattacgc aaagttaatc caaaagctcg ggttctcaag tgatacgctt
      721 cttcttcacc tattcgtgaa tagtggtgtt cttgaggtgt ttcttgatga taatagttct
      781 cataagttcc gtattgctta tatttcaaag gttcacgctg gtaagtatca tcctgtgaag
      841 ggtatctcca agggttctca ggaggctaag agggttctta gggatttgct tgtgcttagt
      901 gaacttcttg agggttctct tgttagctac aggagtgggg gggttgaaac tattcatcac
      961 cttattcctg tccgtcattt tgtccttacc gctcctaagg acgttagttt cagtatttgg
     1021 gcttctctca agaaggggga tagttcattg tttagggctt tcaaggatgc tggtgctaaa
     1081 gccatcaagg agtttttatc ataccttgct tccaaggaac atatctctgg taatctccta
     1141 tttggtttta ctatcaatgt tcatgttact ggtgataaga acccctttga gcctcacttc
     1201 catattgatg ctatcgttac tttcatttgc tatgataagt cttcaaccaa atggtttagg
     1261 cttaatcctc ttctcagcga gagtgatcta aagaaattgc gtgatatttg gaagaacgtg
     1321 ttgctgtcct atttcggtga gcttctctct gaggatacta agtcaaagga ttttgatgtt
     1381 tgggctggtg ataattatta ctctttgcct cttgatgttc ctcaggtctt cttcgagctc
     1441 aagtatgcgt cgaggaagct tttcgtcaat tttgttaatt actttgagca gtctaatttt
     1501 gatgagagct ccgtgtccga ttgggatttt gtccgtttcg tcttcgagta tagtaatagg
     1561 actgaacgtt atggtttcct cactaacatt aaacgttatc tttctatgtc ttgctctcac
     1621 ctcgtagaga agcgtgttca ggagcttgaa gagttcatta gccgtattga gtttgatttg
     1681 tctgtgaatg gtaataagat gagtgattca cttaagaggg ctctccttga gcgtcttgag
     1741 tatttgaagg atgagctttc agaacttaag gagcgtggtt tcgagtatct ctttgagcgt
     1801 gcccttgaga aggcggagga gttgttatct aacgataatc tcactcttga gcgtgttatt
     1861 catattttgg aaactttgtt caccgctctt ggtaagtcta ttgtcaatta caatttctat
     1921 gttgagcttg aggatgtctc cttcagggag tttgtcgatt atctttatga taatcatctc
     1981 tctgatgtcc ttgtctttag tgataggcac cgttctatta ccattattcg gcttattcct
     2041 cctcctgatg ggggtgtgcc tgtatgacac cttccaactt tattgtaagt ttgggtgtca
     2101 ttttggcacc gcaccccaca ctctctcctc tcccccctcg cctcgccccc cgctggtgcc
     2161 tccttggtgc cactacccta cgtttccatc tttttataac tctcgtgcac ttagtaggtg
     2221 ggatggtcca tgaggttgca cgtccatatt aatgacaagt tgggtgaact gttcaagaag
     2281 cgtgtccacc ttgtgtatgg ggataggcgt ggtgctttgt ctcacgccat tgaggaagct
     2341 attatcctgt ggttgctcca tactgactat attgtaaagc ttcagaaggt gaacgctatg
     2401 agccttcaaa ctcaaaggat tgacagcgac tcctctcatt atttgcctat ctctcggttg
     2461 cctcagacta ttgatgagtt tagggctttc tataatagat ttggtgctaa ggctactttg
     2521 cttgtttacc ttcttgttag gggtaagcct ctccgtttgt atgacctttt taggtttcat
     2581 caggctattg ctggtgtgtc ttctgataat tctactcgta aggttctcaa gaggttgttg
     2641 cgggatggtt taatctatag aaaaggtaag ctctattatc cttcccctga tgctcttttg
     2701 cttatgtggg attctattga ttggtcgagg gtgaggacta agcgttatac tggtaatggt
     2761 gtggtgtcta agccttctaa acgtagggtt cgtggtgttg gttctcaggt taggcgggtt
     2821 gttcgtattg cgaggagttt ggctcggcgt ggggatactt tgagggctgt tagtttgctt
     2881 acgcatactc ttttgggtgt taggcagact ggtgtgctcc tttatagaaa aggtggcttg
     2941 tttattgtgt atgagcataa ggacaggtct gttagggttc ttttctctga gcggattggt
     3001 aagttgtttg atgatttggg gcttcctgag gggtctcttt atatgcatat gtattatcgt
     3061 gctggtagga ttattcacaa tgtgtttggg gggtatcggg ttgctcggcg catgttctat
     3121 tttctccgtg agcatggttt cttctatgtt cccgcttctg aggttgatag ggttggtgaa
     3181 tatcgctatg accctcatag cgggaagctc attgttcgta ttggtaattg gacgtatgag
     3241 gttgatgctg atcttgatgc cattgatagt tacgttgaaa atcttaattc gaggaggact
     3301 cgtaagtcta agaagaagtc ttcgtctctc gttagttatc ctcgtgagag gtttggtatt
     3361 gtgcgtgttt caaagcatac gaaggtggag aacgatgttt actacctcaa ttatactccg
     3421 taggagttat aaatccttga gaat
//
