GENEMARK PREDICTIONS Sequence: gi|17232874|ref|NC_003273.1| Nostoc sp. PCC 7120 plasmid pCC7120delta, complete sequence Sequence file: NC_003273.fna Sequence length: 55414 GC Content: 41.61% Window length: 96 Window step: 12 Threshold value: 0.500 --- Matrix: - Matrix author: - Matrix order: 2 List of Open reading frames predicted as CDSs, shown with alternate starts (regions from start to stop codon w/ coding function >0.50) Left Right DNA Coding Avg Start end end Strand Frame Prob Prob -------- -------- ---------- ----- ---- ---- 191 712 direct fr 2 0.76 0.61 299 712 direct fr 2 0.73 0.04 449 712 direct fr 2 0.73 0.01 732 1121 complement fr 2 0.56 0.02 732 1055 complement fr 2 0.67 0.28 732 911 complement fr 2 0.58 0.33 732 896 complement fr 2 0.56 0.47 1661 1846 direct fr 2 0.73 0.52 1712 1846 direct fr 2 0.66 0.17 1721 1846 direct fr 2 0.63 0.18 2024 2275 complement fr 1 0.75 0.30 3106 3570 complement fr 3 0.70 0.13 3106 3534 complement fr 3 0.73 0.52 3106 3447 complement fr 3 0.68 0.01 3106 3432 complement fr 3 0.69 0.00 3567 4835 complement fr 2 0.83 0.18 3567 4814 complement fr 2 0.83 0.65 3567 4775 complement fr 2 0.84 0.55 3567 4694 complement fr 2 0.84 0.17 3567 4625 complement fr 2 0.83 0.14 5244 6947 direct fr 3 0.84 0.57 5379 6947 direct fr 3 0.84 0.56 5460 6947 direct fr 3 0.83 0.00 5475 6947 direct fr 3 0.83 0.02 5550 6947 direct fr 3 0.84 0.17 7108 8601 direct fr 1 0.79 0.12 7204 8601 direct fr 1 0.83 0.43 7279 8601 direct fr 1 0.84 0.18 7456 8601 direct fr 1 0.87 0.57 7474 8601 direct fr 1 0.87 0.32 8732 9469 complement fr 1 0.77 0.15 8732 9442 complement fr 1 0.80 0.49 8732 9346 complement fr 1 0.80 0.42 8732 9241 complement fr 1 0.77 0.16 10684 10929 complement fr 3 0.61 0.64 10684 10806 complement fr 3 0.59 0.15 11416 12096 complement fr 3 0.60 0.62 12718 13152 direct fr 1 0.54 0.37 12856 13152 direct fr 1 0.54 0.05 13526 16036 complement fr 1 0.89 0.79 13526 15751 complement fr 1 0.92 0.04 13526 15568 complement fr 1 0.91 0.41 13526 15400 complement fr 1 0.90 0.45 16305 17030 complement fr 2 0.60 0.19 16305 16904 complement fr 2 0.59 0.02 16305 16889 complement fr 2 0.58 0.13 17129 17356 complement fr 1 0.59 0.13 17129 17341 complement fr 1 0.62 0.30 17129 17317 complement fr 1 0.65 0.38 17579 18706 direct fr 2 0.83 0.54 17717 18706 direct fr 2 0.86 0.07 17720 18706 direct fr 2 0.86 0.16 17795 18706 direct fr 2 0.85 0.23 18699 18962 direct fr 3 0.54 0.33 18771 18962 direct fr 3 0.63 0.72 18959 19225 direct fr 2 0.54 0.08 19010 19225 direct fr 2 0.68 0.18 19732 20034 direct fr 1 0.70 0.03 19765 20034 direct fr 1 0.74 0.48 20044 20715 direct fr 1 0.83 0.49 20116 20715 direct fr 1 0.89 0.48 20134 20715 direct fr 1 0.89 0.41 20200 20715 direct fr 1 0.88 0.03 20789 21367 direct fr 2 0.61 0.65 21002 21367 direct fr 2 0.62 0.03 21140 21367 direct fr 2 0.71 0.28 21364 23091 direct fr 1 0.80 0.04 21427 23091 direct fr 1 0.81 0.17 21490 23091 direct fr 1 0.82 0.19 21571 23091 direct fr 1 0.83 0.14 21718 23091 direct fr 1 0.84 0.43 21769 23091 direct fr 1 0.85 0.21 21826 23091 direct fr 1 0.85 0.16 23316 23987 direct fr 3 0.80 0.41 23466 23987 direct fr 3 0.83 0.32 23493 23987 direct fr 3 0.82 0.03 23616 23987 direct fr 3 0.79 0.42 24134 25048 direct fr 2 0.72 0.00 24206 25048 direct fr 2 0.78 0.10 24425 25048 direct fr 2 0.77 0.16 24434 25048 direct fr 2 0.76 0.08 24509 25048 direct fr 2 0.76 0.05 25509 26519 direct fr 3 0.69 0.31 26070 26519 direct fr 3 0.72 0.50 26133 26519 direct fr 3 0.78 0.04 26142 26519 direct fr 3 0.78 0.14 26292 26519 direct fr 3 0.76 0.38 26869 27582 direct fr 1 0.82 0.73 27037 27582 direct fr 1 0.84 0.02 27052 27582 direct fr 1 0.84 0.02 27091 27582 direct fr 1 0.83 0.40 28340 28606 complement fr 1 0.70 0.82 28340 28519 complement fr 1 0.76 0.09 28340 28513 complement fr 1 0.76 0.26 28340 28501 complement fr 1 0.75 0.30 28853 29434 complement fr 1 0.72 0.24 28853 29389 complement fr 1 0.75 0.07 28853 29143 complement fr 1 0.72 0.06 29720 29992 complement fr 1 0.57 0.47 29720 29872 complement fr 1 0.64 0.23 30730 30981 direct fr 1 0.67 0.22 30778 30981 direct fr 1 0.66 0.24 30835 30981 direct fr 1 0.59 0.03 30868 30981 direct fr 1 0.60 0.59 31532 32248 direct fr 2 0.57 0.17 31583 32248 direct fr 2 0.61 0.13 32364 33017 direct fr 3 0.76 0.86 32424 33017 direct fr 3 0.83 0.03 32505 33017 direct fr 3 0.83 0.34 32559 33017 direct fr 3 0.82 0.29 33285 34334 complement fr 2 0.63 0.47 33285 33698 complement fr 2 0.63 0.41 33285 33437 complement fr 2 0.58 0.51 34350 35369 complement fr 2 0.68 0.92 34350 35261 complement fr 2 0.68 0.10 34350 35183 complement fr 2 0.66 0.07 34350 35177 complement fr 2 0.66 0.02 35563 35658 direct fr 1 0.50 0.32 36135 36323 direct fr 3 0.63 0.43 36549 37049 complement fr 2 0.63 0.86 37039 37371 complement fr 3 0.76 0.55 37039 37356 complement fr 3 0.77 0.48 37039 37344 complement fr 3 0.76 0.37 37039 37323 complement fr 3 0.76 0.26 37513 37809 complement fr 3 0.69 0.91 37513 37677 complement fr 3 0.64 0.41 37513 37665 complement fr 3 0.61 0.34 37513 37662 complement fr 3 0.61 0.39 37917 38132 complement fr 2 0.52 0.70 38274 38768 complement fr 2 0.72 0.82 38274 38765 complement fr 2 0.72 0.66 38274 38555 complement fr 2 0.63 0.10 38274 38534 complement fr 2 0.61 0.62 38274 38513 complement fr 2 0.58 0.80 38913 39320 complement fr 2 0.70 0.81 38913 39296 complement fr 2 0.74 0.85 38913 39056 complement fr 2 0.53 0.02 39304 40155 complement fr 3 0.67 0.67 39304 40038 complement fr 3 0.66 0.36 39304 39927 complement fr 3 0.70 0.34 39304 39855 complement fr 3 0.67 0.04 39304 39837 complement fr 3 0.69 0.35 39304 39594 complement fr 3 0.71 0.43 39304 39549 complement fr 3 0.75 0.58 40152 41159 complement fr 2 0.65 0.78 40152 41150 complement fr 2 0.65 0.85 40152 41120 complement fr 2 0.65 0.54 40152 40997 complement fr 2 0.67 0.09 40152 40838 complement fr 2 0.73 0.22 40152 40814 complement fr 2 0.75 0.21 41129 41386 direct fr 2 0.71 0.12 41252 41386 direct fr 2 0.72 0.01 41294 41386 direct fr 2 0.59 0.16 41364 41819 direct fr 3 0.60 0.94 41502 41819 direct fr 3 0.62 0.49 41823 42986 direct fr 3 0.78 0.23 41964 42986 direct fr 3 0.81 0.23 42426 42986 direct fr 3 0.73 0.08 42507 42986 direct fr 3 0.75 0.21 43046 43453 direct fr 2 0.78 0.64 43064 43453 direct fr 2 0.78 0.17 43133 43453 direct fr 2 0.82 0.21 43154 43453 direct fr 2 0.82 0.50 43407 43679 complement fr 2 0.53 0.07 43407 43676 complement fr 2 0.53 0.08 43407 43631 complement fr 2 0.61 0.57 43407 43556 complement fr 2 0.58 0.28 43407 43529 complement fr 2 0.52 0.33 43655 44074 complement fr 1 0.59 0.42 43655 43762 complement fr 1 0.54 0.09 44181 44813 complement fr 2 0.78 0.35 44181 44648 complement fr 2 0.74 0.02 44181 44579 complement fr 2 0.77 0.58 45989 47791 direct fr 2 0.68 0.78 46007 47791 direct fr 2 0.69 0.29 46019 47791 direct fr 2 0.69 0.01 46052 47791 direct fr 2 0.69 0.31 46250 47791 direct fr 2 0.67 0.07 48307 49050 direct fr 1 0.70 0.45 48448 49050 direct fr 1 0.71 0.28 48454 49050 direct fr 1 0.71 0.27 48586 49050 direct fr 1 0.65 0.04 49056 49769 direct fr 3 0.86 0.38 49068 49769 direct fr 3 0.87 0.49 49128 49769 direct fr 3 0.92 0.34 49179 49769 direct fr 3 0.91 0.09 52366 52902 complement fr 3 0.55 0.38 52366 52794 complement fr 3 0.58 0.08 53583 54239 complement fr 2 0.74 0.14 53583 54176 complement fr 2 0.79 0.26 53583 54086 complement fr 2 0.80 0.35 53583 53918 complement fr 2 0.77 0.49 54633 55334 direct fr 3 0.68 0.19 54729 55334 direct fr 3 0.75 0.43 54981 55334 direct fr 3 0.84 0.75 54999 55334 direct fr 3 0.83 0.55 55020 55334 direct fr 3 0.83 0.07 55303 55416 direct fr 1 0.56 0.20 List of Regions of interest (regions from stop to stop codon w/ a signal in between) LEnd REnd Strand Frame -------- -------- ----------- ----- 20 712 direct fr 2 732 1136 complement fr 2 978 1166 direct fr 3 1601 1846 direct fr 2 2024 2449 complement fr 1 2755 3009 complement fr 3 3106 3600 complement fr 3 3567 4850 complement fr 2 5088 6947 direct fr 3 7006 8601 direct fr 1 8732 9547 complement fr 1 9935 10213 direct fr 2 10286 10516 complement fr 1 10365 10559 complement fr 2 10684 10950 complement fr 3 11416 12102 complement fr 3 11804 12187 direct fr 2 12100 12342 complement fr 3 12340 12531 complement fr 3 12694 13152 direct fr 1 13228 13431 complement fr 3 13526 16078 complement fr 1 16305 17048 complement fr 2 17129 17386 complement fr 1 17552 18706 direct fr 2 18690 18962 direct fr 3 18935 19225 direct fr 2 19212 19430 direct fr 3 19621 20034 direct fr 1 20038 20715 direct fr 1 20774 21367 direct fr 2 20821 21102 complement fr 3 21286 23091 direct fr 1 23298 23987 direct fr 3 23977 24165 direct fr 1 24080 25048 direct fr 2 25479 26519 direct fr 3 26857 27582 direct fr 1 27947 28300 complement fr 1 28340 28612 complement fr 1 28853 29449 complement fr 1 29490 29678 complement fr 2 29720 30007 complement fr 1 30061 30747 complement fr 3 30676 30981 direct fr 1 31014 31232 direct fr 3 31520 32248 direct fr 2 31555 31881 complement fr 3 32358 33017 direct fr 3 33285 34352 complement fr 2 34350 35378 complement fr 2 35503 35658 direct fr 1 35841 36323 direct fr 3 36549 37055 complement fr 2 37039 37425 complement fr 3 37513 37833 complement fr 3 37917 38135 complement fr 2 38274 38786 complement fr 2 38913 39326 complement fr 2 39304 40179 complement fr 3 40100 40252 direct fr 2 40152 41195 complement fr 2 41093 41386 direct fr 2 41361 41819 direct fr 3 41817 42986 direct fr 3 42968 43453 direct fr 2 43407 43682 complement fr 2 43655 44098 complement fr 1 44181 44924 complement fr 2 45769 46119 complement fr 3 45959 47791 direct fr 2 47856 48113 complement fr 2 48298 49050 direct fr 1 49029 49769 direct fr 3 49874 50134 complement fr 1 51107 51415 complement fr 1 52366 52908 complement fr 3 53583 54275 complement fr 2 54531 55334 direct fr 3 -------------------- ABOUT THE MATRIX USED: Training set derived by GeneMarkS, 4.6a Fri Apr 20 18:23:26 2007