GENEMARK PREDICTIONS Sequence: gi|76803367|ref|NC_007427.1| Natronomonas pharaonis DSM 2160 plasmid PL131, complete sequence Sequence file: NC_007427.fna Sequence length: 130989 GC Content: 57.22% Window length: 96 Window step: 12 Threshold value: 0.500 --- Matrix: - Matrix author: - Matrix order: 2 List of Open reading frames predicted as CDSs, shown with alternate starts (regions from start to stop codon w/ coding function >0.50) Left Right DNA Coding Avg Start end end Strand Frame Prob Prob -------- -------- ---------- ----- ---- ---- 90 1430 direct fr 3 0.83 .... 108 1430 direct fr 3 0.83 0.67 537 1430 direct fr 3 0.84 0.32 1427 1675 complement fr 1 0.75 0.05 1427 1666 complement fr 1 0.74 0.03 1427 1654 complement fr 1 0.74 0.01 1751 2233 complement fr 1 0.52 0.01 1751 2221 complement fr 1 0.53 0.11 1751 2176 complement fr 1 0.59 0.66 3147 4046 direct fr 3 0.61 0.00 3183 4046 direct fr 3 0.64 0.08 3189 4046 direct fr 3 0.64 0.39 3249 4046 direct fr 3 0.66 0.28 3255 4046 direct fr 3 0.66 0.30 3384 4046 direct fr 3 0.61 0.02 4664 5233 complement fr 1 0.78 0.72 4664 5101 complement fr 1 0.81 0.31 4664 5095 complement fr 1 0.80 0.31 5230 5661 complement fr 3 0.60 0.03 5230 5598 complement fr 3 0.70 0.16 5230 5289 complement fr 3 0.50 0.66 5692 6021 complement fr 3 0.80 0.25 5692 5949 complement fr 3 0.83 0.10 5692 5937 complement fr 3 0.82 0.05 5692 5877 complement fr 3 0.79 0.52 6085 6471 complement fr 3 0.77 0.03 6085 6444 complement fr 3 0.85 0.96 6085 6360 complement fr 3 0.81 0.18 6759 6896 direct fr 3 0.56 0.90 6822 6896 direct fr 3 0.73 0.29 7213 8067 direct fr 1 0.76 0.05 7246 8067 direct fr 1 0.79 0.95 7870 8067 direct fr 1 0.76 0.41 7960 8067 direct fr 1 0.57 0.07 8959 11118 direct fr 1 0.81 0.96 9073 11118 direct fr 1 0.81 0.03 9145 11118 direct fr 1 0.81 0.02 9733 11118 direct fr 1 0.83 0.47 11255 12007 direct fr 2 0.78 0.74 11276 12007 direct fr 2 0.80 0.53 11450 12007 direct fr 2 0.77 0.36 11528 12007 direct fr 2 0.77 0.11 11558 12007 direct fr 2 0.77 0.01 12114 12872 complement fr 2 0.83 0.27 12114 12782 complement fr 2 0.87 0.17 12114 12776 complement fr 2 0.86 0.10 12114 12764 complement fr 2 0.86 0.45 12869 13891 complement fr 1 0.82 0.63 12869 13834 complement fr 1 0.84 0.03 12869 13666 complement fr 1 0.82 0.33 12869 13633 complement fr 1 0.81 0.10 14209 14319 complement fr 3 0.50 0.02 14209 14289 complement fr 3 0.57 0.99 14209 14280 complement fr 3 0.50 0.97 14294 15808 complement fr 1 0.85 0.51 14294 15805 complement fr 1 0.85 0.32 14294 15691 complement fr 1 0.88 0.10 14294 15676 complement fr 1 0.88 0.02 14294 15658 complement fr 1 0.87 0.16 15808 16305 complement fr 3 0.64 0.64 15808 16290 complement fr 3 0.65 0.39 15808 16260 complement fr 3 0.65 0.20 15808 16179 complement fr 3 0.61 0.16 15808 16005 complement fr 3 0.57 0.02 16381 17250 complement fr 3 0.89 0.40 16381 17196 complement fr 3 0.89 0.25 16381 17154 complement fr 3 0.88 0.12 18116 19615 complement fr 1 0.81 0.00 18116 19564 complement fr 1 0.83 0.00 18116 19516 complement fr 1 0.86 0.09 18116 19498 complement fr 1 0.87 0.80 18116 19456 complement fr 1 0.88 0.28 18116 19453 complement fr 1 0.88 0.13 18116 19372 complement fr 1 0.87 0.32 19971 20810 direct fr 3 0.51 0.02 20025 20810 direct fr 3 0.54 0.59 20040 20810 direct fr 3 0.55 0.87 20316 20810 direct fr 3 0.51 0.65 20319 20810 direct fr 3 0.52 0.46 20382 20810 direct fr 3 0.58 0.82 21077 21766 direct fr 2 0.75 0.19 21086 21766 direct fr 2 0.76 0.35 21533 21766 direct fr 2 0.56 0.59 21759 22256 direct fr 3 0.78 0.90 21795 22256 direct fr 3 0.82 0.60 22002 22256 direct fr 3 0.74 0.29 22080 22256 direct fr 3 0.71 0.16 22747 23061 direct fr 1 0.70 0.12 22783 23061 direct fr 1 0.78 0.74 23302 23703 direct fr 1 0.70 0.78 23446 23703 direct fr 1 0.80 0.02 23491 23703 direct fr 1 0.75 0.04 23587 23703 direct fr 1 0.62 0.02 23696 24877 direct fr 2 0.77 0.28 23762 24877 direct fr 2 0.81 0.37 23807 24877 direct fr 2 0.83 0.49 23897 24877 direct fr 2 0.82 0.05 23900 24877 direct fr 2 0.82 0.01 24892 25815 direct fr 1 0.77 0.64 24940 25815 direct fr 1 0.80 0.33 24973 25815 direct fr 1 0.79 0.16 25180 25815 direct fr 1 0.80 0.07 26165 27955 direct fr 2 0.88 0.00 26174 27955 direct fr 2 0.88 0.00 26183 27955 direct fr 2 0.88 0.01 26282 27955 direct fr 2 0.92 0.17 26342 27955 direct fr 2 0.92 0.01 26510 27955 direct fr 2 0.91 0.04 28695 29606 direct fr 3 0.63 0.16 28722 29606 direct fr 3 0.64 0.35 28827 29606 direct fr 3 0.70 0.33 29013 29606 direct fr 3 0.69 0.04 29214 29606 direct fr 3 0.64 0.13 29286 29606 direct fr 3 0.63 0.09 29956 30375 direct fr 1 0.57 0.04 30025 30375 direct fr 1 0.63 0.34 30196 30375 direct fr 1 0.59 0.04 30202 30375 direct fr 1 0.59 0.06 30238 30375 direct fr 1 0.68 0.84 30907 31911 complement fr 3 0.51 0.00 30907 31815 complement fr 3 0.56 0.01 30907 31809 complement fr 3 0.57 0.09 30907 31806 complement fr 3 0.57 0.05 30907 31677 complement fr 3 0.56 0.08 30907 31656 complement fr 3 0.57 0.03 30907 31638 complement fr 3 0.56 0.57 30907 31623 complement fr 3 0.56 0.32 30907 31596 complement fr 3 0.56 0.06 32587 33123 direct fr 1 0.61 0.00 32695 33123 direct fr 1 0.75 0.08 32746 33123 direct fr 1 0.76 0.77 32770 33123 direct fr 1 0.75 0.04 32773 33123 direct fr 1 0.74 0.07 33125 33421 direct fr 2 0.79 0.79 33134 33421 direct fr 2 0.82 0.94 33173 33421 direct fr 2 0.85 0.20 33215 33421 direct fr 2 0.82 0.01 33338 33421 direct fr 2 0.56 0.43 33810 35654 complement fr 2 0.76 0.02 33810 35561 complement fr 2 0.81 0.96 33810 35558 complement fr 2 0.81 0.83 33810 35216 complement fr 2 0.84 0.06 33810 35213 complement fr 2 0.84 0.10 33810 35171 complement fr 2 0.86 0.82 33810 35147 complement fr 2 0.86 0.33 33810 35054 complement fr 2 0.85 0.01 35738 35914 direct fr 2 0.62 0.17 35777 35914 direct fr 2 0.53 0.17 36318 37145 direct fr 3 0.83 0.38 36441 37145 direct fr 3 0.88 0.01 36558 37145 direct fr 3 0.87 0.02 36618 37145 direct fr 3 0.85 0.06 37269 37637 direct fr 3 0.61 0.62 37311 37637 direct fr 3 0.70 0.38 37641 37970 direct fr 3 0.83 0.90 37764 37970 direct fr 3 0.77 0.07 37848 37970 direct fr 3 0.70 0.31 38528 38941 complement fr 1 0.73 0.38 38528 38884 complement fr 1 0.79 0.58 38528 38767 complement fr 1 0.72 0.62 38528 38680 complement fr 1 0.64 0.04 38938 39948 complement fr 3 0.77 0.85 38938 39903 complement fr 3 0.78 0.00 38938 39819 complement fr 3 0.77 0.18 39948 40613 complement fr 2 0.83 0.94 39948 40556 complement fr 2 0.84 0.12 39948 40511 complement fr 2 0.82 0.10 39948 40490 complement fr 2 0.82 0.04 40616 41761 complement fr 1 0.64 0.00 40616 41575 complement fr 1 0.76 0.00 40616 41443 complement fr 1 0.88 0.91 40616 41272 complement fr 1 0.86 0.03 40616 41209 complement fr 1 0.85 0.30 40616 41125 complement fr 1 0.88 0.07 41446 42357 complement fr 3 0.80 0.83 41446 42246 complement fr 3 0.79 0.07 41446 42087 complement fr 3 0.88 0.75 42354 43352 complement fr 2 0.78 0.25 42354 43265 complement fr 2 0.80 0.11 42354 43211 complement fr 2 0.84 0.12 42354 43052 complement fr 2 0.88 0.18 42354 42920 complement fr 2 0.88 0.09 42354 42803 complement fr 2 0.87 0.33 43362 44378 complement fr 2 0.80 0.01 43362 44375 complement fr 2 0.81 0.00 43362 44336 complement fr 2 0.84 0.20 43362 44000 complement fr 2 0.91 0.03 43362 43976 complement fr 2 0.90 0.03 43362 43757 complement fr 2 0.86 0.03 45115 45888 complement fr 3 0.87 0.33 45115 45825 complement fr 3 0.86 0.23 45115 45669 complement fr 3 0.84 0.01 45910 46512 direct fr 1 0.52 0.00 46003 46512 direct fr 1 0.62 0.00 46051 46512 direct fr 1 0.68 0.54 46066 46512 direct fr 1 0.70 0.81 46210 46512 direct fr 1 0.65 0.06 46512 47189 direct fr 3 0.85 0.99 46563 47189 direct fr 3 0.88 0.01 46752 47189 direct fr 3 0.84 0.21 46758 47189 direct fr 3 0.84 0.24 47192 48847 direct fr 2 0.89 0.80 47252 48847 direct fr 2 0.90 0.48 47303 48847 direct fr 2 0.90 0.09 47333 48847 direct fr 2 0.90 0.38 49284 50564 direct fr 3 0.62 0.00 49359 50564 direct fr 3 0.66 0.77 49524 50564 direct fr 3 0.62 0.06 49704 50564 direct fr 3 0.62 0.63 49878 50564 direct fr 3 0.55 0.20 50819 51016 complement fr 1 0.55 0.81 50819 50983 complement fr 1 0.67 0.11 50819 50947 complement fr 1 0.58 0.79 51035 51826 complement fr 1 0.80 0.22 51035 51679 complement fr 1 0.84 0.18 51035 51658 complement fr 1 0.84 0.04 51035 51613 complement fr 1 0.83 0.04 51826 52650 complement fr 3 0.75 0.17 51826 52548 complement fr 3 0.82 0.02 51826 52455 complement fr 3 0.82 0.36 51826 52416 complement fr 3 0.81 0.15 51826 52383 complement fr 3 0.80 0.18 52650 53453 complement fr 2 0.81 0.98 52650 53279 complement fr 2 0.83 0.68 52650 53258 complement fr 2 0.84 0.20 52650 53213 complement fr 2 0.83 0.19 52650 53207 complement fr 2 0.83 0.22 53477 54658 complement fr 1 0.75 0.00 53477 54583 complement fr 1 0.80 0.23 53477 54550 complement fr 1 0.82 0.02 53477 54541 complement fr 1 0.82 0.15 53477 54274 complement fr 1 0.79 0.02 53477 54241 complement fr 1 0.78 0.02 53477 54175 complement fr 1 0.76 0.09 54801 57290 direct fr 3 0.86 0.01 54900 57290 direct fr 3 0.89 0.11 55293 57290 direct fr 3 0.95 0.36 55380 57290 direct fr 3 0.96 0.25 55431 57290 direct fr 3 0.95 0.00 55500 57290 direct fr 3 0.96 0.73 57410 57700 complement fr 1 0.52 0.54 57687 57983 complement fr 2 0.72 0.86 57687 57944 complement fr 2 0.78 0.73 57687 57827 complement fr 2 0.63 0.08 58424 58594 direct fr 2 0.61 1.00 58676 58978 direct fr 2 0.88 0.57 58892 58978 direct fr 2 0.77 0.02 59047 59598 complement fr 3 0.88 0.22 59047 59364 complement fr 3 0.85 0.06 59047 59286 complement fr 3 0.81 0.01 59047 59163 complement fr 3 0.64 0.07 59534 60832 complement fr 1 0.76 0.06 59534 60784 complement fr 1 0.78 0.64 59534 60739 complement fr 1 0.78 0.11 59534 60586 complement fr 1 0.75 0.13 60816 61265 complement fr 2 0.66 0.99 60816 61220 complement fr 2 0.67 0.03 60816 61214 complement fr 2 0.67 0.01 60816 61190 complement fr 2 0.65 0.05 61409 61579 direct fr 2 0.53 0.96 61490 61579 direct fr 2 0.50 0.05 61875 63308 direct fr 3 0.70 0.20 62151 63308 direct fr 3 0.65 0.04 62244 63308 direct fr 3 0.64 0.72 63408 63761 direct fr 3 0.74 0.05 63435 63761 direct fr 3 0.82 0.60 63534 63761 direct fr 3 0.84 0.02 63567 63761 direct fr 3 0.81 0.47 63606 63761 direct fr 3 0.77 0.20 64165 64365 direct fr 1 0.75 0.05 64240 64365 direct fr 1 0.62 0.07 64246 64365 direct fr 1 0.62 0.05 65213 66706 complement fr 1 0.68 0.00 65213 66451 complement fr 1 0.81 0.35 65213 66070 complement fr 1 0.76 0.03 65213 65863 complement fr 1 0.72 0.39 65213 65752 complement fr 1 0.76 0.29 66448 66906 complement fr 3 0.73 0.41 66448 66831 complement fr 3 0.78 0.05 66910 67491 complement fr 3 0.77 0.02 66910 67449 complement fr 3 0.83 0.95 66910 67416 complement fr 3 0.83 0.18 66910 67380 complement fr 3 0.82 0.02 67974 68471 direct fr 3 0.61 0.02 67983 68471 direct fr 3 0.63 0.17 68133 68471 direct fr 3 0.86 0.32 68217 68471 direct fr 3 0.82 0.69 68232 68471 direct fr 3 0.82 0.27 68630 69646 direct fr 2 0.92 0.01 68636 69646 direct fr 2 0.92 0.06 68849 69646 direct fr 2 0.94 0.43 69649 71343 direct fr 1 0.89 0.77 69667 71343 direct fr 1 0.90 0.78 69679 71343 direct fr 1 0.90 0.48 69853 71343 direct fr 1 0.88 0.00 71577 71678 direct fr 3 0.84 0.88 71691 72140 complement fr 2 0.74 0.97 71691 72131 complement fr 2 0.76 0.84 72140 73018 complement fr 1 0.78 0.97 72140 72820 complement fr 1 0.80 0.21 72140 72781 complement fr 1 0.79 0.41 73933 74703 direct fr 1 0.81 0.54 74110 74703 direct fr 1 0.83 0.02 74278 74703 direct fr 1 0.77 0.02 74506 74703 direct fr 1 0.73 0.02 74759 76159 complement fr 1 0.53 0.17 74759 76003 complement fr 1 0.55 0.04 74759 75853 complement fr 1 0.53 0.30 76218 77543 direct fr 3 0.87 0.00 76230 77543 direct fr 3 0.88 0.00 76380 77543 direct fr 3 0.98 0.89 76530 77543 direct fr 3 0.98 0.12 76584 77543 direct fr 3 0.98 0.05 77547 78761 direct fr 3 0.95 0.60 77646 78761 direct fr 3 0.95 0.29 77856 78761 direct fr 3 0.95 0.01 79133 79438 complement fr 1 0.64 0.78 79133 79435 complement fr 1 0.64 0.69 79133 79342 complement fr 1 0.61 0.24 79712 81376 complement fr 1 0.81 0.16 79712 81325 complement fr 1 0.83 0.77 79712 81184 complement fr 1 0.82 0.05 79712 81169 complement fr 1 0.82 0.01 79712 81151 complement fr 1 0.83 0.00 79712 80995 complement fr 1 0.88 0.37 81676 83010 complement fr 3 0.73 0.01 81676 82998 complement fr 3 0.74 0.20 81676 82932 complement fr 3 0.75 0.18 81676 82578 complement fr 3 0.82 0.11 81676 82512 complement fr 3 0.81 0.10 83276 84598 direct fr 2 0.86 0.04 83297 84598 direct fr 2 0.88 0.03 83369 84598 direct fr 2 0.92 0.08 83459 84598 direct fr 2 0.95 0.67 83642 84598 direct fr 2 0.95 0.10 83702 84598 direct fr 2 0.94 0.06 84583 85488 direct fr 1 0.76 0.15 84604 85488 direct fr 1 0.78 0.58 84703 85488 direct fr 1 0.80 0.24 84733 85488 direct fr 1 0.79 0.22 84859 85488 direct fr 1 0.81 0.22 85485 86546 direct fr 3 0.81 0.02 85599 86546 direct fr 3 0.84 0.28 85653 86546 direct fr 3 0.83 0.07 85683 86546 direct fr 3 0.83 0.10 86543 87280 direct fr 2 0.82 0.49 86786 87280 direct fr 2 0.87 0.02 86807 87280 direct fr 2 0.87 0.08 86825 87280 direct fr 2 0.87 0.67 87277 88023 direct fr 1 0.87 0.99 87364 88023 direct fr 1 0.89 0.00 87574 88023 direct fr 1 0.90 0.09 87586 88023 direct fr 1 0.90 0.22 88119 88616 complement fr 2 0.83 0.79 88119 88484 complement fr 2 0.84 0.41 88119 88334 complement fr 2 0.75 0.09 88119 88313 complement fr 2 0.72 0.05 89251 91530 direct fr 1 0.82 0.06 89254 91530 direct fr 1 0.82 0.02 89302 91530 direct fr 1 0.84 0.84 89383 91530 direct fr 1 0.84 0.32 89515 91530 direct fr 1 0.83 0.65 89674 91530 direct fr 1 0.83 0.32 91701 93062 direct fr 3 0.79 0.01 91758 93062 direct fr 3 0.82 0.08 91788 93062 direct fr 3 0.84 0.85 91797 93062 direct fr 3 0.84 0.62 91809 93062 direct fr 3 0.84 0.49 91911 93062 direct fr 3 0.85 0.28 93092 94738 direct fr 2 0.68 0.19 93200 94738 direct fr 2 0.70 0.60 93209 94738 direct fr 2 0.70 0.07 93239 94738 direct fr 2 0.69 0.15 95817 97298 direct fr 3 0.81 0.03 95829 97298 direct fr 3 0.82 0.02 95928 97298 direct fr 3 0.87 0.72 96024 97298 direct fr 3 0.89 0.71 96138 97298 direct fr 3 0.88 0.02 97840 99690 direct fr 1 0.71 0.74 97930 99690 direct fr 1 0.73 0.27 98341 99690 direct fr 1 0.73 0.86 98383 99690 direct fr 1 0.75 0.07 98815 99690 direct fr 1 0.75 0.06 98863 99690 direct fr 1 0.79 0.66 99028 99690 direct fr 1 0.77 0.11 99043 99690 direct fr 1 0.76 0.02 99820 100761 complement fr 3 0.91 0.91 99820 100638 complement fr 3 0.91 0.10 99820 100578 complement fr 3 0.90 0.15 100828 101454 complement fr 3 0.88 0.85 100828 101430 complement fr 3 0.88 0.01 100828 101313 complement fr 3 0.86 0.03 101482 103338 complement fr 3 0.92 0.90 101482 103242 complement fr 3 0.93 0.02 101482 103152 complement fr 3 0.93 0.73 101482 103146 complement fr 3 0.93 0.20 103335 105398 complement fr 2 0.92 0.78 103335 105308 complement fr 2 0.92 0.10 103335 105194 complement fr 2 0.92 0.05 105508 106119 direct fr 1 0.78 0.72 105517 106119 direct fr 1 0.80 0.43 105739 106119 direct fr 1 0.84 0.16 106191 106523 direct fr 3 0.58 0.66 106556 107818 direct fr 2 0.74 0.15 106898 107818 direct fr 2 0.74 0.15 106970 107818 direct fr 2 0.72 0.86 107066 107818 direct fr 2 0.69 0.01 107860 107976 direct fr 1 0.63 0.98 108185 108604 direct fr 2 0.75 0.41 108293 108604 direct fr 2 0.78 0.04 108419 108604 direct fr 2 0.72 0.65 109232 109471 complement fr 1 0.51 0.84 109923 110336 direct fr 3 0.59 0.03 110082 110336 direct fr 3 0.64 0.25 110816 111715 direct fr 2 0.83 0.61 110843 111715 direct fr 2 0.84 0.40 110888 111715 direct fr 2 0.83 0.02 110999 111715 direct fr 2 0.80 0.07 111984 112238 direct fr 3 0.86 0.12 111999 112238 direct fr 3 0.84 0.02 112059 112238 direct fr 3 0.79 0.05 112269 112742 complement fr 2 0.74 0.96 112269 112694 complement fr 2 0.80 0.00 112269 112577 complement fr 2 0.77 0.46 112269 112460 complement fr 2 0.70 0.71 112746 113087 complement fr 2 0.53 0.08 113034 113978 direct fr 3 0.73 0.02 113127 113978 direct fr 3 0.78 0.23 113355 113978 direct fr 3 0.81 0.01 113406 113978 direct fr 3 0.81 0.36 114154 115545 direct fr 1 0.86 0.99 114202 115545 direct fr 1 0.88 0.00 114511 115545 direct fr 1 0.91 0.01 114553 115545 direct fr 1 0.90 0.00 115610 115984 direct fr 2 0.74 0.89 115652 115984 direct fr 2 0.74 0.09 115655 115984 direct fr 2 0.74 0.14 115736 115984 direct fr 2 0.67 0.02 116136 116960 complement fr 2 0.66 0.87 116136 116780 complement fr 2 0.63 0.06 116136 116693 complement fr 2 0.58 0.03 116136 116687 complement fr 2 0.58 0.03 117709 118401 complement fr 3 0.81 0.50 117709 118380 complement fr 3 0.84 0.47 117709 118257 complement fr 3 0.81 0.00 117709 118134 complement fr 3 0.81 0.09 117709 118053 complement fr 3 0.76 0.27 118504 119235 complement fr 3 0.77 0.27 118504 119064 complement fr 3 0.86 0.28 118504 118929 complement fr 3 0.85 0.65 118504 118794 complement fr 3 0.80 0.53 119308 120471 complement fr 3 0.72 0.00 119308 120378 complement fr 3 0.77 0.49 119308 119901 complement fr 3 0.70 0.04 119308 119802 complement fr 3 0.70 0.26 119308 119598 complement fr 3 0.67 0.51 120783 123029 complement fr 2 0.77 0.82 120783 122978 complement fr 2 0.77 0.07 120783 122957 complement fr 2 0.77 0.00 123357 124091 complement fr 2 0.66 0.41 123357 123953 complement fr 2 0.73 0.15 123357 123785 complement fr 2 0.67 0.10 123357 123782 complement fr 2 0.67 0.05 124840 125727 direct fr 1 0.91 0.24 124927 125727 direct fr 1 0.93 0.01 124939 125727 direct fr 1 0.93 0.02 125005 125727 direct fr 1 0.93 0.33 126195 127040 complement fr 2 0.63 0.40 126195 127004 complement fr 2 0.66 0.50 126195 126977 complement fr 2 0.67 0.02 126195 126938 complement fr 2 0.69 0.54 126195 126920 complement fr 2 0.69 0.86 126195 126785 complement fr 2 0.66 0.62 127444 128706 complement fr 3 0.75 0.35 127444 128364 complement fr 3 0.75 0.21 127444 128298 complement fr 3 0.73 0.37 127444 128292 complement fr 3 0.73 0.10 129056 130099 direct fr 2 0.81 0.93 129656 130099 direct fr 2 0.80 0.10 129665 130099 direct fr 2 0.80 0.01 130331 130774 complement fr 1 0.68 0.45 130331 130702 complement fr 1 0.70 0.12 List of Regions of interest (regions from stop to stop codon w/ a signal in between) LEnd REnd Strand Frame -------- -------- ----------- ----- 21 1430 direct fr 3 1427 1732 complement fr 1 1751 2653 complement fr 1 2952 3263 complement fr 2 3126 4046 direct fr 3 4303 4731 direct fr 1 4461 4661 direct fr 3 4664 5320 complement fr 1 5194 5622 direct fr 1 5230 5694 complement fr 3 5620 6264 direct fr 1 5692 6030 complement fr 3 6085 6492 complement fr 3 6756 6896 direct fr 3 7042 7572 complement fr 3 7147 8067 direct fr 1 8210 8665 complement fr 1 8422 8883 complement fr 3 8944 11118 direct fr 1 11165 12007 direct fr 2 12114 12881 complement fr 2 12869 13906 complement fr 1 13805 13951 direct fr 2 14294 15814 complement fr 1 14783 15346 direct fr 2 15808 16383 complement fr 3 16381 17349 complement fr 3 17351 18046 complement fr 1 18116 19639 complement fr 1 19959 20810 direct fr 3 21005 21766 direct fr 2 21383 21925 complement fr 1 21651 22256 direct fr 3 22483 23061 direct fr 1 22501 22950 complement fr 3 23293 23703 direct fr 1 23687 24877 direct fr 2 24841 25815 direct fr 1 25897 26064 direct fr 1 26141 27955 direct fr 2 28158 28685 direct fr 3 28683 29606 direct fr 3 29950 30375 direct fr 1 30340 30624 complement fr 3 30907 32307 complement fr 3 32521 33123 direct fr 1 33068 33421 direct fr 2 33273 33704 complement fr 2 33810 35684 complement fr 2 35124 35588 direct fr 3 35600 35914 direct fr 2 36306 37145 direct fr 3 37218 37637 direct fr 3 37635 37970 direct fr 3 38317 38571 direct fr 1 38528 38959 complement fr 1 38938 40029 complement fr 3 39076 39411 direct fr 1 39948 40646 complement fr 2 40616 41983 complement fr 1 41446 42591 complement fr 3 41881 42390 direct fr 1 42354 43364 complement fr 2 43035 44360 direct fr 3 43362 44414 complement fr 2 45115 45969 complement fr 3 45907 46512 direct fr 1 46479 47189 direct fr 3 47132 48847 direct fr 2 49251 50564 direct fr 3 50819 51034 complement fr 1 51035 51922 complement fr 1 51826 52689 complement fr 3 52650 53519 complement fr 2 53477 54706 complement fr 1 53528 53923 direct fr 2 54756 57290 direct fr 3 57392 57853 direct fr 2 57410 57715 complement fr 1 57687 57995 complement fr 2 58388 58594 direct fr 2 58592 58978 direct fr 2 59047 59655 complement fr 3 59534 60847 complement fr 1 59924 60526 direct fr 2 60816 61292 complement fr 2 61391 61579 direct fr 2 61564 61878 direct fr 1 61704 63308 direct fr 3 63387 63761 direct fr 3 63739 64365 direct fr 1 65213 66730 complement fr 1 66448 66912 complement fr 3 66910 67518 complement fr 3 67968 68471 direct fr 3 68579 69646 direct fr 2 69571 71343 direct fr 1 71478 71678 direct fr 3 71691 72155 complement fr 2 71787 72260 direct fr 3 72140 73057 complement fr 1 73873 74703 direct fr 1 74759 76168 complement fr 1 76209 77543 direct fr 3 77541 78761 direct fr 3 78684 78833 complement fr 2 78842 79093 direct fr 2 79133 79456 complement fr 1 79703 80254 direct fr 2 79712 81400 complement fr 1 80937 81254 direct fr 3 81568 81840 direct fr 1 81676 83037 complement fr 3 82546 83013 direct fr 1 83273 84598 direct fr 2 84580 85488 direct fr 1 85473 86546 direct fr 3 86492 87280 direct fr 2 87250 88023 direct fr 1 88119 88640 complement fr 2 89203 91530 direct fr 1 91695 93062 direct fr 3 93044 94738 direct fr 2 95759 96088 complement fr 1 95805 97298 direct fr 3 97762 98244 complement fr 3 97780 99690 direct fr 1 98464 99453 complement fr 3 99820 100830 complement fr 3 100828 101484 complement fr 3 101317 102213 direct fr 1 101482 103347 complement fr 3 103335 105470 complement fr 2 105505 106119 direct fr 1 106173 106523 direct fr 3 106532 107818 direct fr 2 107734 107976 direct fr 1 108068 108604 direct fr 2 108332 108703 complement fr 1 108857 109234 complement fr 1 109232 109906 complement fr 1 109866 110336 direct fr 3 110759 111715 direct fr 2 111772 112071 complement fr 3 111888 112238 direct fr 3 112269 112748 complement fr 2 112746 113132 complement fr 2 112995 113978 direct fr 3 114121 115545 direct fr 1 115511 115984 direct fr 2 116136 117023 complement fr 2 117084 117602 complement fr 2 117126 117515 direct fr 3 117709 118428 complement fr 3 118504 119241 complement fr 3 119308 120522 complement fr 3 120783 123155 complement fr 2 120804 121223 direct fr 3 122086 122277 direct fr 1 123357 124148 complement fr 2 124016 124411 complement fr 1 124771 125727 direct fr 1 125875 126045 direct fr 1 126195 127061 complement fr 2 127444 128730 complement fr 3 129038 130099 direct fr 2 130331 130792 complement fr 1 POSSIBLE SEQUENCE FRAMESHIFTS DETECTED From To Frame Frame At base... ----- ----- ---------- 1 3 4488 +/- 11 bp (direct) 1 3 59628 +/- 11 bp (complement) 1 3 61764 +/- 11 bp (direct) -------------------- ABOUT THE MATRIX USED: Training set derived by GeneMarkS, 4.6a Fri Apr 20 18:07:12 2007