LOCUS NC_008230 3661 bp DNA circular BCT 08-DEC-2007 DEFINITION Helicobacter acinonychis str. Sheeba plasmid pHac1, complete sequence. ACCESSION NC_008230 VERSION NC_008230.1 GI:109948253 KEYWORDS complete genome. SOURCE Helicobacter acinonychis str. Sheeba ORGANISM Helicobacter acinonychis str. Sheeba Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter. REFERENCE 1 (bases 1 to 3661) AUTHORS Eppinger,M., Baar,C., Linz,B., Raddatz,G., Lanz,C., Keller,H., Morelli,G., Gressmann,H., Achtman,M. and Schuster,S.C. TITLE Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from early humans to large felines JOURNAL PLoS Genet. 2 (7), E120 (2006) PUBMED 16789826 REFERENCE 2 (bases 1 to 3661) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (01-JUL-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3661) AUTHORS Schuster,S.C. TITLE Direct Submission JOURNAL Submitted (27-MAR-2006) Schuster S.C., Department of Biochemistry and Molecular Biology, Center for Comparative Genomics and Bioinformatics Center for Infectious Disease Dynamics, 310 Wartik Building, Penn State University, University Park, PA 16802, USA Phone +1 814 863-9278, FAX +1 814 863-6699 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AM260523. Clone requests: scs@bx.psu.edu. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3661 /organism="Helicobacter acinonychis str. Sheeba" /mol_type="genomic DNA" /strain="Sheeba" /db_xref="taxon:382638" /plasmid="pHac1" gene 234..515 /locus_tag="pHac1_1" /db_xref="GeneID:4177775" CDS 234..515 /locus_tag="pHac1_1" /note="similar to JHP0828 hypothetical protein" /codon_start=1 /inference="similar to DNA sequence:INSDC:AAD06405.1" /transl_table=11 /product="hypothetical protein" /protein_id="YP_665481.1" /db_xref="GI:109948254" /db_xref="GeneID:4177775" /translation="MLKNVEMGANFYKKLGKLEKQLAKYQSKVLEIKIQIKEIKKQYS QAKKDENLASKYIPNDELKKDLLDIDNPNTTENFKPKNASEIWQFALNS" gene 524..793 /locus_tag="pHac1_2" /db_xref="GeneID:4177776" CDS 524..793 /locus_tag="pHac1_2" /note="similar to JHP0825 hypothetical protein" /codon_start=1 /inference="similar to DNA sequence:INSDC:AAD06402.1" /transl_table=11 /product="hypothetical protein" /protein_id="YP_665482.1" /db_xref="GI:109948255" /db_xref="GeneID:4177776" /translation="MLEIELKKKFTKDLKKYILNQKIELEVFDLVVENLRNQIPLDKR FKDHALSGTYKGCRECHIKPDVLLVYRVKDNVLTLVRLGSHSELF" gene complement(1041..1151) /locus_tag="pHac1_3" /db_xref="GeneID:4177777" CDS complement(1041..1151) /locus_tag="pHac1_3" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_665483.1" /db_xref="GI:109948256" /db_xref="GeneID:4177777" /translation="MRFCLCSLTLRLLVFACQQTIGLKPLICSLTLARRF" gene complement(1329..1538) /locus_tag="pHac1_4" /db_xref="GeneID:4177778" CDS complement(1329..1538) /locus_tag="pHac1_4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_665484.1" /db_xref="GI:109948257" /db_xref="GeneID:4177778" /translation="MVTINFLSSLIVGKKFPYRWQEVPLSLARSSLIVGKKFPFIHFH PKMRNHTASLFRLFQPPIPHARACE" gene complement(1568..1684) /locus_tag="pHac1_5" /db_xref="GeneID:4177779" CDS complement(1568..1684) /locus_tag="pHac1_5" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_665485.1" /db_xref="GI:109948258" /db_xref="GeneID:4177779" /translation="MVCLLTECYPLQTPNPLAFKANCSKFVNTRISNHVIPP" gene 1854..3476 /gene="repA" /locus_tag="pHac1_6" /db_xref="GeneID:4177780" CDS 1854..3476 /gene="repA" /locus_tag="pHac1_6" /note="replication protein repA,InterPro; Initiator RepB protein hypothetical protein" /codon_start=1 /inference="protein motif:InterPro:IPR000525" /transl_table=11 /product="replication A protein" /protein_id="YP_665486.1" /db_xref="GI:109948259" /db_xref="GeneID:4177780" /translation="MPMNTNFEQLIKQELELRKLLEELDTLPQTPQIKLQKQKIQTYI DKITPSILSGFNQKFKEITKNSPNEFEKETQEPTPLKESQTTITPCKDLVVTTPKDKT YITYHNNANKVNLGKLSEREANLLFAIFQRLKDQGNTLIRFEPQDLKRMLNIDISNER LSEVVIKLWDSIKTADFWKISETETSIIQENYMLFSRCKIELNKPSKDLKYLEIQLND SYQYLLNNLGMGQYTSFNLLEFQRVRGKYAKTLYRLLKQYKSTGILSVEWSQFRELLD IPKDYEMRNIDQKVLTPAIKELHKIYPFEHLSYKKERRSHDKRKVTHIDFYFEQLPKG GTKKQKQADKQRTQRDIKLIAWDIKRQGIIKRSKETLGVREMDLKSLIGSLFENPNGT ILKIENIAKEKNQFFMHVSYPNRKSEPQKLAVSDKRYALEFLYVSGGYTFKKDNLLQE TFTHSIHPITNEPIKEFAKYIGKTINITNHNVDQCPDGISNCLKITNIVKLNDNQIQI SLQDVDKPDKLLKPFIAKDEKHLKNWFKKYYR" ORIGIN 1 atttacatta gcaaaaaagg gtgttttttc aagacacaaa aaaagggcag gataacactc 61 aaaaagaaaa aaatgtgcac tttttaagtg ggggtgtctt acgcagacca ctagataagg 121 gggttacagc gttccttaaa aaaaacttaa aaatgagacc ttttttttgg ctcttttggt 181 aaaaaacttg gatataatgg ggttgttatg attgattgag ttaaggagat aagatgttaa 241 aaaatgtaga aatgggggct aatttttata aaaagcttgg caaattagaa aaacaattag 301 ctaaatatca aagtaaagtt ttagaaatta aaatacaaat aaaagagatt aaaaagcaat 361 attctcaagc taagaaagat gagaatttag ctagtaaata tattcctaat gatgagttaa 421 aaaaagattt attagatatt gataatccta atacgactga aaactttaag cctaaaaatg 481 ctagtgaaat ttggcaattc gctcttaatt cttaggggat tgaatgctag agattgagtt 541 aaaaaagaaa ttcactaaag atttaaaaaa gtatatttta aatcaaaaaa ttgagttaga 601 agtttttgac ttagtggttg aaaatttaag aaatcaaatt ccattggata aaagatttaa 661 agaccacgct ttaagtggaa catacaaagg ctgtagagag tgccacatta aacctgatgt 721 tttgcttgtg tatagagtga aagataatgt tttgacctta gtcaggcttg gcagtcatag 781 cgagttgttt tagacaaatt tctttctaaa atcgcctaga atgaattttc aatcctaatc 841 caacctaatc atcgtttttt aagttaagcg atgaaatagg gctattttta gctcattatt 901 ggggtatttt gtttttagtt gaaagttagc tttcaaaatt caaaacaact tcatttccct 961 tttagtcgct aaccatttag ccaatctaac tagtttagca tctaaaagcg catatgactt 1021 cggcttccaa tccaacccta ctaaaaccgc ctagcgagcg ttagcgagca aataagcggt 1081 tttagaccga ttgtttgctg acaagcaaac accaacaagc gaagcgttag cgagcataga 1141 caaaagcgca tcgcagtttg aaagcgtagg cgttagccga agctgttttg cgttagcaaa 1201 tcaaacaaga tagcgcaaac ctggcgttag actaaaaaac ccctaaaaac taaaactcca 1261 aaattatgta gcgcgtcatg cgcgttgttt ttttactttt ttaaatagca tgctgttttt 1321 tacatgtttt actcgcatgc gcgcgcgtga gggattgggg gttggaagag cctaaataac 1381 gaagctgtat ggtttctcat ttttgggtga aaatgaataa aggggaactt cttgccaacg 1441 ataagggaac ttcttgccaa cgataaggga acttcttgcc aacgataagg gaacttcttg 1501 ccaacgataa gggaacttaa aaagttaata gttaccatat tagcaatttt ttagctataa 1561 taacagccta aggcggtata acatggttgc taatcctagt gttaacaaat ttggagcaat 1621 tagctttaaa agctagtggg ttgggagttt gtagcgggta gcactccgtt aggaggcaca 1681 ccatgaaagc atttttaata gtagtgattt tagtggtaat cttaacacag ccacttatat 1741 taaaaaaaac cttagcgttt taataatcct tataagtccg gcaagacttt ttaagggttt 1801 cactcctatt tattatatcg tcttttgaaa aataagcatt aaaaggcggt taaatgccca 1861 tgaatacgaa ttttgaacag cttataaaac aagaattgga attacgaaaa ttattagaag 1921 aattagacac actcccacaa accccacaaa ttaaactaca aaaacaaaaa atacaaactt 1981 acatagacaa gataactcca agtattttga gcggttttaa tcaaaaattc aaagaaatta 2041 caaaaaattc accaaatgag tttgaaaaag aaacccaaga acccacacca ctcaaagaat 2101 cgcaaaccac gatcacacca tgcaaagatt tagtggttac aacccctaaa gataaaacct 2161 atatcaccta ccacaacaac gctaataagg ttaatctagg gaaattgagc gaaagggaag 2221 ccaatctttt attcgctatt tttcaaaggc ttaaagatca agggaatacc cttattcgtt 2281 ttgaaccgca agatttaaag cgcatgctaa acatagatat ttctaacgag cgcttatcag 2341 aagttgttat taagctatgg gatagcatta aaaccgctga tttttggaaa attagcgaaa 2401 cagaaacttc aatcattcaa gaaaattaca tgctttttag tcggtgtaaa attgaattga 2461 ataaacctag taaagattta aagtatttag aaatccaact caatgatagc tatcaatact 2521 tgctcaacaa tctaggaatg ggtcaataca cttctttcaa tctcttagaa tttcaaagag 2581 tgaggggtaa atacgctaaa acgctctatc gcttgctcaa gcaatacaaa agcacaggga 2641 ttttaagcgt ggaatggtct caattcaggg agcttttaga cattccaaaa gactatgaaa 2701 tgcgaaacat cgatcaaaaa gtcttaactc cagccattaa agaactccat aaaatctacc 2761 cttttgaaca cttgagctac aagaaagaac gccgaagcca tgacaagcgc aaggtaaccc 2821 acattgattt ttactttgaa caattgccta aaggcggaac caagaaacaa aaacaagcgg 2881 acaagcaacg cactcaaaga gatattaagc tcatagcgtg ggacattaaa agacaaggca 2941 ttatcaaacg ctctaaagaa accctaggag ttagggaaat ggatttgaaa agtttgatag 3001 gctctctttt tgaaaaccct aatgggacta ttttaaaaat tgaaaacatc gctaaagaaa 3061 aaaaccaatt cttcatgcat gtttcttacc ctaacagaaa aagtgaaccg caaaaattgg 3121 ctgtatctga caaacgatac gctttagaat ttttgtatgt cagtggagga tacaccttca 3181 aaaaagacaa tttgttacaa gaaaccttta cgcatagcat ccaccctatc actaacgaac 3241 ccatcaaaga gtttgcaaaa tacataggca aaacgatcaa catcactaac cacaatgtag 3301 atcaatgccc tgatgggata tcaaactgct taaaaatcac taacattgtc aaattgaatg 3361 acaatcaaat ccaaatctct ctccaagatg tggataaacc tgacaaactc ctaaaacctt 3421 tcatcgctaa agatgaaaaa catttgaaga attggtttaa gaaatattac cgctgaaaat 3481 gtttgtgaaa aacgcttgag cgatcaatct aatgatcaaa actaaactac gaacaaccta 3541 tttgaaagtt taggaaaaaa attcttcaca tcttagactg ctaactaaaa aacttcaatt 3601 ttttctttct aactaacttc tggcaaaaaa cacgatccaa aaaaggggca aatttcacac 3661 c //