GENEMARK PREDICTIONS Sequence: gi|55376412|ref|NC_006394.1| Haloarcula marismortui ATCC 43049 plasmid pNG600, complete sequence Sequence file: NC_006394.fna Sequence length: 155300 GC Content: 58.33% Window length: 96 Window step: 12 Threshold value: 0.500 --- Matrix: - Matrix author: - Matrix order: 2 List of Open reading frames predicted as CDSs, shown with alternate starts (regions from start to stop codon w/ coding function >0.50) Left Right DNA Coding Avg Start end end Strand Frame Prob Prob -------- -------- ---------- ----- ---- ---- 158 721 direct fr 2 0.66 0.96 263 721 direct fr 2 0.67 0.09 524 721 direct fr 2 0.59 0.01 4315 4539 direct fr 1 0.56 0.07 6049 6483 direct fr 1 0.51 0.01 6301 6483 direct fr 1 0.74 0.78 6310 6483 direct fr 1 0.74 0.77 6373 6483 direct fr 1 0.62 0.08 6640 6912 direct fr 1 0.52 0.90 6997 7947 complement fr 3 0.66 0.00 6997 7692 complement fr 3 0.90 0.93 6997 7320 complement fr 3 0.80 0.01 6997 7305 complement fr 3 0.79 0.21 7689 8363 complement fr 2 0.93 0.85 7689 8258 complement fr 2 0.93 0.16 7689 8180 complement fr 2 0.91 0.00 8770 9588 direct fr 1 0.92 0.47 8800 9588 direct fr 1 0.95 0.75 8995 9588 direct fr 1 0.93 0.06 9004 9588 direct fr 1 0.93 0.11 9585 9992 direct fr 3 0.72 0.81 9672 9992 direct fr 3 0.79 0.01 9684 9992 direct fr 3 0.78 0.00 9822 9992 direct fr 3 0.76 0.02 10266 11498 direct fr 3 0.86 0.92 10491 11498 direct fr 3 0.87 0.29 10641 11498 direct fr 3 0.90 0.02 10848 11498 direct fr 3 0.87 0.16 11532 12185 complement fr 2 0.89 0.01 11532 12029 complement fr 2 0.88 0.05 11532 11879 complement fr 2 0.83 0.01 11532 11876 complement fr 2 0.83 0.01 12214 14133 complement fr 3 0.88 0.72 12214 14016 complement fr 3 0.88 0.05 12214 13980 complement fr 3 0.88 0.02 12214 13908 complement fr 3 0.87 0.07 14138 14353 complement fr 1 0.65 0.70 14402 15079 direct fr 2 0.63 0.13 14534 15079 direct fr 2 0.79 0.41 14555 15079 direct fr 2 0.80 0.76 14597 15079 direct fr 2 0.84 0.17 14636 15079 direct fr 2 0.85 0.44 14645 15079 direct fr 2 0.84 0.32 15109 16575 complement fr 3 0.84 0.92 15109 16398 complement fr 3 0.88 0.02 15109 16395 complement fr 3 0.88 0.17 15109 16383 complement fr 3 0.88 0.43 16904 18298 direct fr 2 0.84 0.32 16988 18298 direct fr 2 0.86 0.15 17039 18298 direct fr 2 0.85 0.02 17048 18298 direct fr 2 0.85 0.01 18424 19023 direct fr 1 0.61 0.36 18457 19023 direct fr 1 0.65 0.12 18538 19023 direct fr 1 0.68 0.04 18547 19023 direct fr 1 0.70 0.12 18550 19023 direct fr 1 0.70 0.15 18562 19023 direct fr 1 0.72 0.68 18571 19023 direct fr 1 0.72 0.45 18598 19023 direct fr 1 0.74 0.51 18646 19023 direct fr 1 0.73 0.32 19192 19512 direct fr 1 0.90 0.93 19225 19512 direct fr 1 0.97 0.70 19345 19512 direct fr 1 0.95 0.49 19357 19512 direct fr 1 0.95 0.27 19570 19923 direct fr 1 0.72 0.51 19693 19923 direct fr 1 0.72 0.17 19696 19923 direct fr 1 0.72 0.19 19729 19923 direct fr 1 0.68 0.03 20019 20435 direct fr 3 0.88 0.78 20292 20435 direct fr 3 0.94 0.08 20295 20435 direct fr 3 0.93 0.03 20439 20792 direct fr 3 0.89 0.75 20520 20792 direct fr 3 0.86 0.19 20526 20792 direct fr 3 0.86 0.10 20916 21224 direct fr 3 0.68 0.22 21090 21224 direct fr 3 0.67 0.01 20950 21990 direct fr 1 0.61 0.00 20995 21990 direct fr 1 0.64 0.00 21007 21990 direct fr 1 0.64 0.00 21064 21990 direct fr 1 0.69 0.00 21094 21990 direct fr 1 0.70 0.00 21217 21990 direct fr 1 0.82 0.00 21244 21990 direct fr 1 0.85 0.65 21346 21990 direct fr 1 0.89 0.12 21352 21990 direct fr 1 0.88 0.15 21529 21990 direct fr 1 0.84 0.11 22275 23036 complement fr 2 0.91 0.83 22275 23027 complement fr 2 0.91 0.50 22275 22895 complement fr 2 0.89 0.07 23024 23794 complement fr 1 0.72 0.00 23024 23782 complement fr 1 0.74 0.00 23024 23761 complement fr 1 0.75 0.03 23024 23644 complement fr 1 0.83 0.36 23024 23626 complement fr 1 0.83 0.86 23024 23545 complement fr 1 0.81 0.87 23754 24497 complement fr 2 0.81 0.01 23754 24485 complement fr 2 0.82 0.03 23754 24377 complement fr 2 0.92 0.90 23754 24287 complement fr 2 0.91 0.12 23754 24143 complement fr 2 0.90 0.53 25256 25396 complement fr 1 0.53 0.86 25256 25372 complement fr 1 0.62 0.87 25746 26699 complement fr 2 0.63 0.00 25746 26627 complement fr 2 0.68 0.04 25746 26405 complement fr 2 0.75 0.01 25746 26297 complement fr 2 0.75 0.11 25746 26096 complement fr 2 0.71 0.10 25746 26093 complement fr 2 0.71 0.07 26635 27006 complement fr 3 0.58 0.94 26635 26973 complement fr 3 0.63 0.87 26635 26751 complement fr 3 0.60 0.17 27059 27553 complement fr 1 0.65 0.38 27059 27430 complement fr 1 0.74 0.00 27059 27319 complement fr 1 0.84 0.00 27059 27205 complement fr 1 0.73 0.02 27059 27160 complement fr 1 0.61 0.00 29273 29560 complement fr 1 0.62 0.82 29273 29527 complement fr 1 0.69 0.25 29273 29488 complement fr 1 0.64 0.46 29273 29470 complement fr 1 0.60 0.66 29567 30112 complement fr 1 0.66 0.02 29567 30100 complement fr 1 0.68 0.02 29567 29986 complement fr 1 0.71 0.40 29567 29848 complement fr 1 0.67 0.04 29567 29761 complement fr 1 0.78 0.87 29567 29758 complement fr 1 0.77 0.55 31624 32673 complement fr 3 0.88 0.83 31624 32649 complement fr 3 0.90 0.40 31624 32625 complement fr 3 0.90 0.11 31624 32514 complement fr 3 0.89 0.27 32622 32846 complement fr 2 0.54 0.07 32864 35470 complement fr 1 0.89 0.03 32864 35434 complement fr 1 0.90 0.07 32864 35230 complement fr 1 0.90 0.02 32864 34957 complement fr 1 0.91 0.78 32864 34876 complement fr 1 0.91 0.03 35565 36200 complement fr 2 0.58 0.00 35565 36182 complement fr 2 0.59 0.02 35565 36155 complement fr 2 0.63 0.63 36284 36487 direct fr 2 0.70 0.66 36290 36487 direct fr 2 0.74 0.43 36317 36487 direct fr 2 0.84 0.72 36559 39342 direct fr 1 0.90 0.92 36622 39342 direct fr 1 0.90 0.01 36679 39342 direct fr 1 0.90 0.02 36706 39342 direct fr 1 0.90 0.40 39354 39752 complement fr 2 0.69 0.02 39354 39668 complement fr 2 0.72 0.05 39354 39635 complement fr 2 0.70 0.08 39354 39632 complement fr 2 0.70 0.07 39781 40341 complement fr 3 0.89 0.36 39781 40320 complement fr 3 0.92 0.61 39781 40248 complement fr 3 0.92 0.23 39781 40230 complement fr 3 0.92 0.56 40456 40806 direct fr 1 0.92 0.88 40525 40806 direct fr 1 0.91 0.18 40579 40806 direct fr 1 0.89 0.26 41421 41618 direct fr 3 0.51 0.25 40810 41085 direct fr 1 0.95 0.96 40864 41085 direct fr 1 0.95 0.02 40972 41085 direct fr 1 0.90 0.34 41752 41961 direct fr 1 0.60 0.70 41764 41961 direct fr 1 0.64 0.65 41782 41961 direct fr 1 0.68 0.52 41791 41961 direct fr 1 0.71 0.19 41848 41961 direct fr 1 0.61 0.41 41857 41961 direct fr 1 0.61 0.13 42093 44375 direct fr 3 0.90 0.42 42270 44375 direct fr 3 0.92 0.04 42360 44375 direct fr 3 0.92 0.46 42381 44375 direct fr 3 0.92 0.04 44592 44696 direct fr 3 0.59 0.97 44697 45584 complement fr 2 0.80 0.42 44697 45434 complement fr 2 0.84 0.03 44697 45176 complement fr 2 0.77 0.00 44697 45173 complement fr 2 0.77 0.00 45653 45949 complement fr 1 0.72 0.97 46159 48684 direct fr 1 0.77 0.00 46228 48684 direct fr 1 0.79 0.05 46312 48684 direct fr 1 0.82 0.90 46333 48684 direct fr 1 0.82 0.18 46423 48684 direct fr 1 0.82 0.89 46489 48684 direct fr 1 0.82 0.26 46684 48684 direct fr 1 0.83 0.45 46177 46305 complement fr 3 0.51 0.26 48748 48906 complement fr 3 0.51 0.39 48985 50196 complement fr 3 0.71 0.03 48985 49845 complement fr 3 0.80 0.08 48985 49788 complement fr 3 0.81 0.12 48985 49716 complement fr 3 0.80 0.11 48985 49572 complement fr 3 0.77 0.00 50958 51521 direct fr 3 0.64 0.49 51120 51521 direct fr 3 0.73 0.47 51123 51521 direct fr 3 0.73 0.44 51189 51521 direct fr 3 0.74 0.35 51390 51521 direct fr 3 0.60 0.18 51625 52377 direct fr 1 0.61 0.95 51793 52377 direct fr 1 0.63 0.19 51862 52377 direct fr 1 0.64 0.59 51865 52377 direct fr 1 0.63 0.70 53051 54205 complement fr 1 0.84 0.10 53051 53983 complement fr 1 0.91 0.16 53051 53977 complement fr 1 0.91 0.08 53051 53932 complement fr 1 0.90 0.13 54374 54826 complement fr 1 0.55 0.04 54374 54784 complement fr 1 0.60 0.05 54374 54523 complement fr 1 0.59 0.34 55198 55614 complement fr 3 0.51 0.74 55622 56608 complement fr 1 0.80 0.08 55622 56431 complement fr 1 0.86 0.03 55622 56287 complement fr 1 0.85 0.34 55622 56155 complement fr 1 0.84 0.24 55622 56131 complement fr 1 0.84 0.01 56713 57228 complement fr 3 0.53 0.00 56713 57135 complement fr 3 0.64 0.64 56713 57123 complement fr 3 0.65 0.38 56713 57120 complement fr 3 0.67 0.18 56713 56955 complement fr 3 0.71 0.38 56713 56910 complement fr 3 0.67 0.00 57401 58363 direct fr 2 0.73 0.22 57404 58363 direct fr 2 0.73 0.14 57455 58363 direct fr 2 0.76 0.04 57653 58363 direct fr 2 0.87 0.08 57830 58363 direct fr 2 0.83 0.01 57896 58363 direct fr 2 0.83 0.53 58693 59169 direct fr 1 0.55 0.01 58792 59169 direct fr 1 0.68 0.44 58807 59169 direct fr 1 0.71 0.17 58900 59169 direct fr 1 0.75 0.78 59068 59169 direct fr 1 0.54 0.01 59166 59444 direct fr 3 0.75 0.97 59334 59444 direct fr 3 0.69 0.11 59373 59444 direct fr 3 0.56 0.38 59441 60763 direct fr 2 0.71 0.11 59543 60763 direct fr 2 0.74 0.15 59732 60763 direct fr 2 0.73 0.12 59747 60763 direct fr 2 0.73 0.02 60760 61167 complement fr 3 0.82 0.81 60760 61143 complement fr 3 0.84 0.51 60760 61134 complement fr 3 0.84 0.38 60760 61014 complement fr 3 0.77 0.02 61170 62105 complement fr 2 0.87 0.89 61170 61928 complement fr 2 0.89 0.08 61170 61916 complement fr 2 0.89 0.04 61170 61901 complement fr 2 0.89 0.01 62127 62564 complement fr 2 0.60 0.66 62127 62465 complement fr 2 0.61 0.06 62127 62387 complement fr 2 0.53 0.03 62566 65253 complement fr 3 0.85 0.16 62566 65250 complement fr 3 0.85 0.12 62566 65043 complement fr 3 0.89 0.02 62566 64965 complement fr 3 0.89 0.28 62566 64875 complement fr 3 0.89 0.13 62566 64857 complement fr 3 0.89 0.00 65377 65565 complement fr 3 0.53 0.80 65586 65990 complement fr 2 0.50 0.28 66472 66738 direct fr 1 0.64 0.10 66722 68233 direct fr 2 0.59 0.06 66908 68233 direct fr 2 0.66 0.22 67139 68233 direct fr 2 0.61 0.70 67226 68233 direct fr 2 0.59 0.08 67364 68233 direct fr 2 0.65 0.08 67376 68233 direct fr 2 0.66 0.08 67730 68233 direct fr 2 0.56 0.18 68294 69364 complement fr 1 0.69 0.05 68294 69247 complement fr 1 0.74 0.16 68294 69199 complement fr 1 0.72 0.01 68294 69193 complement fr 1 0.72 0.07 69594 70655 complement fr 2 0.86 0.77 69594 70640 complement fr 2 0.87 0.58 69594 70610 complement fr 2 0.89 0.08 69594 70502 complement fr 2 0.88 0.00 69594 70496 complement fr 2 0.88 0.02 70642 71949 complement fr 3 0.75 0.04 70642 71736 complement fr 3 0.81 0.43 70642 71610 complement fr 3 0.80 0.03 70642 71460 complement fr 3 0.77 0.03 72026 72802 complement fr 1 0.51 0.00 72026 72613 complement fr 1 0.67 0.86 72026 72514 complement fr 1 0.68 0.01 72026 72454 complement fr 1 0.73 0.50 72026 72436 complement fr 1 0.72 0.13 72026 72352 complement fr 1 0.74 0.29 73509 73637 direct fr 3 0.62 0.60 73709 74032 complement fr 1 0.51 0.01 73709 74002 complement fr 1 0.57 0.62 74136 74303 direct fr 3 0.56 0.97 74163 74303 direct fr 3 0.70 0.26 74379 75431 direct fr 3 0.91 0.99 74442 75431 direct fr 3 0.94 0.04 74592 75431 direct fr 3 0.93 0.05 74619 75431 direct fr 3 0.92 0.06 75435 75617 direct fr 3 0.69 0.68 75465 75617 direct fr 3 0.77 0.96 75510 75617 direct fr 3 0.78 0.05 75765 76139 direct fr 3 0.56 0.63 76248 76547 direct fr 3 0.59 0.00 76263 76547 direct fr 3 0.64 0.17 76323 76547 direct fr 3 0.76 0.21 76568 76771 complement fr 1 0.65 0.42 76568 76711 complement fr 1 0.65 0.23 76568 76696 complement fr 1 0.63 0.78 76911 77333 direct fr 3 0.72 0.60 77034 77333 direct fr 3 0.80 0.17 77088 77333 direct fr 3 0.78 0.89 77172 77333 direct fr 3 0.70 0.03 77311 79014 direct fr 1 0.81 0.13 77323 79014 direct fr 1 0.82 0.43 77359 79014 direct fr 1 0.84 0.64 77398 79014 direct fr 1 0.84 0.03 77626 79014 direct fr 1 0.84 0.22 77692 79014 direct fr 1 0.84 0.00 79236 79916 direct fr 3 0.64 0.72 79239 79916 direct fr 3 0.64 0.72 79428 79916 direct fr 3 0.65 0.02 79518 79916 direct fr 3 0.62 0.01 79554 79916 direct fr 3 0.64 0.20 80125 81282 direct fr 1 0.52 0.05 80128 81282 direct fr 1 0.52 0.10 80152 81282 direct fr 1 0.53 0.71 80209 81282 direct fr 1 0.53 0.04 81289 82302 direct fr 1 0.81 0.15 81415 82302 direct fr 1 0.84 0.73 81463 82302 direct fr 1 0.84 0.20 81571 82302 direct fr 1 0.82 0.12 82299 84383 direct fr 3 0.94 0.07 82413 84383 direct fr 3 0.94 0.01 82569 84383 direct fr 3 0.94 0.29 82776 84383 direct fr 3 0.93 0.12 84334 88746 direct fr 1 0.88 0.00 84346 88746 direct fr 1 0.89 0.01 84376 88746 direct fr 1 0.89 0.44 84409 88746 direct fr 1 0.90 0.59 84562 88746 direct fr 1 0.91 0.23 84580 88746 direct fr 1 0.91 0.59 84781 88746 direct fr 1 0.91 0.02 84838 88746 direct fr 1 0.92 0.69 88786 90801 direct fr 1 0.91 0.96 89296 90801 direct fr 1 0.89 0.00 89401 90801 direct fr 1 0.88 0.08 89458 90801 direct fr 1 0.88 0.01 93302 93640 direct fr 2 0.63 0.00 93332 93640 direct fr 2 0.67 0.03 93350 93640 direct fr 2 0.73 0.71 93637 93966 direct fr 1 0.61 0.51 93640 93966 direct fr 1 0.61 0.62 94066 94473 direct fr 1 0.71 0.00 94117 94473 direct fr 1 0.83 0.22 94123 94473 direct fr 1 0.83 0.08 94237 94473 direct fr 1 0.97 0.02 94384 94473 direct fr 1 0.93 0.03 94480 94809 direct fr 1 0.83 0.13 94552 94809 direct fr 1 0.85 0.26 94564 94809 direct fr 1 0.84 0.15 94894 95151 direct fr 1 0.65 0.02 95056 95151 direct fr 1 0.54 0.00 95448 96599 direct fr 3 0.58 0.03 95454 96599 direct fr 3 0.58 0.03 95496 96599 direct fr 3 0.60 0.04 95679 96599 direct fr 3 0.72 0.21 95739 96599 direct fr 3 0.77 0.20 95775 96599 direct fr 3 0.80 0.94 95892 96599 direct fr 3 0.77 0.03 96126 96599 direct fr 3 0.78 0.79 99133 100065 direct fr 1 0.75 0.40 99136 100065 direct fr 1 0.75 0.55 99145 100065 direct fr 1 0.76 0.95 99466 100065 direct fr 1 0.72 0.08 99802 100065 direct fr 1 0.82 0.28 100329 101198 direct fr 3 0.70 0.82 100386 101198 direct fr 3 0.70 0.11 100614 101198 direct fr 3 0.75 0.63 100656 101198 direct fr 3 0.73 0.00 101357 101452 direct fr 2 0.57 0.28 101449 101937 complement fr 3 0.78 0.64 101449 101664 complement fr 3 0.62 0.25 101955 102569 complement fr 2 0.75 0.00 101955 102515 complement fr 2 0.83 0.15 101955 102506 complement fr 2 0.83 0.15 101955 102461 complement fr 2 0.88 0.76 102642 102845 direct fr 3 0.71 0.93 102711 102845 direct fr 3 0.66 0.17 102842 103030 direct fr 2 0.55 0.60 102872 103030 direct fr 2 0.51 0.00 103117 103497 direct fr 1 0.80 0.18 103273 103497 direct fr 1 0.75 0.06 103321 103497 direct fr 1 0.68 0.02 103565 104227 direct fr 2 0.85 0.95 103889 104227 direct fr 2 0.86 0.01 103892 104227 direct fr 2 0.86 0.01 103910 104227 direct fr 2 0.85 0.00 104184 104549 direct fr 3 0.65 0.02 104187 104549 direct fr 3 0.67 0.01 104265 104549 direct fr 3 0.82 0.78 104289 104549 direct fr 3 0.87 0.08 104611 105360 direct fr 1 0.74 0.20 104659 105360 direct fr 1 0.78 0.48 104965 105360 direct fr 1 0.84 0.49 105034 105360 direct fr 1 0.85 0.01 105085 105360 direct fr 1 0.82 0.44 105003 107783 direct fr 3 0.76 0.00 105075 107783 direct fr 3 0.78 0.23 105417 107783 direct fr 3 0.89 0.33 105420 107783 direct fr 3 0.89 0.47 105438 107783 direct fr 3 0.90 0.34 105507 107783 direct fr 3 0.90 0.19 105675 107783 direct fr 3 0.89 0.02 107904 108326 direct fr 3 0.88 0.83 108024 108326 direct fr 3 0.95 0.18 108369 108935 direct fr 3 0.84 0.18 108408 108935 direct fr 3 0.89 0.76 108426 108935 direct fr 3 0.90 0.66 108435 108935 direct fr 3 0.90 0.62 108441 108935 direct fr 3 0.90 0.73 108942 109307 direct fr 3 0.59 0.02 109350 109775 direct fr 3 0.75 0.30 109380 109775 direct fr 3 0.80 0.86 109455 109775 direct fr 3 0.83 0.04 109482 109775 direct fr 3 0.87 0.17 109554 109775 direct fr 3 0.90 0.04 109740 109775 direct fr 3 0.51 0.00 109537 110442 direct fr 1 0.56 0.00 109654 110442 direct fr 1 0.64 0.01 109663 110442 direct fr 1 0.65 0.00 109669 110442 direct fr 1 0.66 0.00 109723 110442 direct fr 1 0.70 0.00 109726 110442 direct fr 1 0.70 0.00 109801 110442 direct fr 1 0.79 0.01 109804 110442 direct fr 1 0.79 0.00 109828 110442 direct fr 1 0.82 0.00 109858 110442 direct fr 1 0.85 0.66 110487 111437 direct fr 3 0.58 0.88 110511 111437 direct fr 3 0.60 0.82 110766 111437 direct fr 3 0.58 0.08 111087 111437 direct fr 3 0.71 0.00 111243 111437 direct fr 3 0.70 0.95 111474 112838 complement fr 2 0.93 0.44 111474 112793 complement fr 2 0.95 0.40 111474 112712 complement fr 2 0.95 0.03 111474 112577 complement fr 2 0.95 0.10 112976 113422 direct fr 2 0.53 0.11 113051 113422 direct fr 2 0.56 0.28 113419 113973 direct fr 1 0.83 0.68 113455 113973 direct fr 1 0.88 0.32 113470 113973 direct fr 1 0.88 0.27 113734 113973 direct fr 1 0.82 0.11 114052 114738 direct fr 1 0.70 0.25 114355 114738 direct fr 1 0.83 0.04 114427 114738 direct fr 1 0.83 0.34 114562 114738 direct fr 1 0.73 0.10 114866 115531 direct fr 2 0.61 0.01 114896 115531 direct fr 2 0.63 0.05 115067 115531 direct fr 2 0.70 0.07 115519 116064 direct fr 1 0.58 0.91 115528 116064 direct fr 1 0.59 0.97 115603 116064 direct fr 1 0.55 0.01 115675 116064 direct fr 1 0.57 0.28 116110 116511 direct fr 1 0.53 0.09 116122 116511 direct fr 1 0.55 0.64 116134 116511 direct fr 1 0.57 0.94 116194 116511 direct fr 1 0.59 0.10 116607 117869 direct fr 3 0.86 0.00 116664 117869 direct fr 3 0.90 0.67 116700 117869 direct fr 3 0.92 0.20 116709 117869 direct fr 3 0.92 0.16 116811 117869 direct fr 3 0.93 0.50 117912 118481 complement fr 2 0.52 0.00 117912 118466 complement fr 2 0.53 0.00 117912 118097 complement fr 2 0.73 0.52 118568 118912 complement fr 1 0.70 0.34 118568 118813 complement fr 1 0.74 0.87 118991 120445 direct fr 2 0.90 0.82 119018 120445 direct fr 2 0.92 0.97 119090 120445 direct fr 2 0.93 0.02 119093 120445 direct fr 2 0.93 0.01 119126 120445 direct fr 2 0.94 0.22 120449 120856 complement fr 1 0.80 0.78 120449 120838 complement fr 1 0.81 0.95 120449 120754 complement fr 1 0.76 0.33 120449 120664 complement fr 1 0.68 0.13 120960 121787 direct fr 3 0.81 0.85 121146 121787 direct fr 3 0.86 0.27 121155 121787 direct fr 3 0.86 0.05 121194 121787 direct fr 3 0.85 0.14 121734 122378 complement fr 2 0.88 0.02 121734 122333 complement fr 2 0.91 0.97 121734 122312 complement fr 2 0.91 0.39 121734 122294 complement fr 2 0.90 0.12 122465 124741 direct fr 2 0.82 0.17 122501 124741 direct fr 2 0.83 0.39 122636 124741 direct fr 2 0.83 0.14 122780 124741 direct fr 2 0.82 0.12 122789 124741 direct fr 2 0.82 0.11 124738 125022 complement fr 3 0.55 0.00 124738 124977 complement fr 3 0.65 0.38 124738 124944 complement fr 3 0.70 0.08 124738 124914 complement fr 3 0.72 0.08 124738 124887 complement fr 3 0.69 0.31 124738 124857 complement fr 3 0.68 0.47 125043 125291 direct fr 3 0.64 0.04 125076 125291 direct fr 3 0.71 0.91 125181 125291 direct fr 3 0.62 0.01 125349 126416 direct fr 3 0.68 0.10 125415 126416 direct fr 3 0.72 0.05 125484 126416 direct fr 3 0.77 0.20 125607 126416 direct fr 3 0.79 0.03 125799 126416 direct fr 3 0.79 0.02 126111 126416 direct fr 3 0.77 0.03 126488 126835 direct fr 2 0.63 0.50 126647 126835 direct fr 2 0.67 0.55 126869 127849 direct fr 2 0.85 0.00 126914 127849 direct fr 2 0.89 0.10 126923 127849 direct fr 2 0.89 0.29 126983 127849 direct fr 2 0.92 0.17 127148 127849 direct fr 2 0.91 0.17 127355 127849 direct fr 2 0.89 0.33 127960 128775 direct fr 1 0.75 0.90 128164 128775 direct fr 1 0.67 0.05 128290 128775 direct fr 1 0.61 0.01 128919 129686 direct fr 3 0.84 0.73 129027 129686 direct fr 3 0.87 0.15 129057 129686 direct fr 3 0.88 0.17 129060 129686 direct fr 3 0.88 0.30 129785 130261 direct fr 2 0.67 0.03 129881 130261 direct fr 2 0.70 0.02 129935 130261 direct fr 2 0.66 0.70 130022 130261 direct fr 2 0.53 0.02 130262 131284 direct fr 2 0.65 0.87 130415 131284 direct fr 2 0.65 0.41 130436 131284 direct fr 2 0.64 0.49 130463 131284 direct fr 2 0.63 0.12 131353 131673 direct fr 1 0.77 0.97 132156 132656 complement fr 2 0.67 0.00 132156 132566 complement fr 2 0.80 0.22 132688 133263 direct fr 1 0.82 0.89 132883 133263 direct fr 1 0.85 0.35 132928 133263 direct fr 1 0.84 0.35 133141 133263 direct fr 1 0.61 0.08 133867 135135 complement fr 3 0.76 0.80 133867 134949 complement fr 3 0.80 0.23 133867 134754 complement fr 3 0.87 0.26 133867 134487 complement fr 3 0.88 0.11 133867 134370 complement fr 3 0.86 0.21 135471 137627 complement fr 2 0.80 0.19 135471 137468 complement fr 2 0.80 0.22 135471 137312 complement fr 2 0.83 0.03 135471 137246 complement fr 2 0.84 0.54 137898 138323 complement fr 2 0.60 0.00 137898 138290 complement fr 2 0.64 0.18 137898 138275 complement fr 2 0.68 0.27 137898 138179 complement fr 2 0.70 0.25 137898 138047 complement fr 2 0.60 0.19 137898 138029 complement fr 2 0.57 0.04 138323 138643 complement fr 1 0.60 0.83 138646 139584 complement fr 3 0.77 0.04 138646 139479 complement fr 3 0.79 0.24 138646 139398 complement fr 3 0.79 0.54 138646 139356 complement fr 3 0.78 0.26 138646 139218 complement fr 3 0.74 0.00 140761 141999 direct fr 1 0.55 0.38 140773 141999 direct fr 1 0.55 0.68 140821 141999 direct fr 1 0.56 0.25 141968 142450 complement fr 1 0.50 0.17 141968 142330 complement fr 1 0.50 0.04 141968 142324 complement fr 1 0.50 0.03 142737 143426 direct fr 3 0.86 0.86 143112 143426 direct fr 3 0.91 0.45 143196 143426 direct fr 3 0.88 0.05 143217 143426 direct fr 3 0.87 0.04 143442 144470 complement fr 2 0.77 0.51 143442 143966 complement fr 2 0.84 0.25 143442 143933 complement fr 2 0.85 0.88 143442 143534 complement fr 2 0.52 0.08 144649 148287 complement fr 3 0.84 0.59 144649 148257 complement fr 3 0.84 0.96 144649 148221 complement fr 3 0.84 0.09 148288 151185 complement fr 3 0.83 0.85 148288 151092 complement fr 3 0.83 0.01 148288 151053 complement fr 3 0.83 0.02 148288 150972 complement fr 3 0.84 0.97 151201 151818 complement fr 3 0.79 0.48 151201 151746 complement fr 3 0.77 0.08 151201 151647 complement fr 3 0.73 0.25 151815 155108 complement fr 2 0.89 0.01 151815 154646 complement fr 2 0.91 0.00 151815 154574 complement fr 2 0.91 0.02 151815 154562 complement fr 2 0.91 0.01 155105 155299 complement fr 1 0.56 .... 155105 155245 complement fr 1 0.56 .... 155105 155239 complement fr 1 0.59 .... List of Regions of interest (regions from stop to stop codon w/ a signal in between) LEnd REnd Strand Frame -------- -------- ----------- ----- 134 721 direct fr 2 143 574 complement fr 1 739 2163 complement fr 3 1386 1571 complement fr 2 2154 3614 complement fr 2 3664 4539 direct fr 1 4494 5333 direct fr 3 5386 5991 direct fr 1 5599 6039 complement fr 3 6022 6483 direct fr 1 6532 6912 direct fr 1 6997 7977 complement fr 3 7689 8426 complement fr 2 8722 9588 direct fr 1 9570 9992 direct fr 3 10263 11498 direct fr 3 11532 12332 complement fr 2 12124 13530 direct fr 1 12214 14352 complement fr 3 14138 14395 complement fr 1 14366 15079 direct fr 2 15109 16584 complement fr 3 16838 18298 direct fr 2 18394 19023 direct fr 1 19174 19512 direct fr 1 19510 19923 direct fr 1 19636 19992 complement fr 3 20010 20435 direct fr 3 20433 20792 direct fr 3 20889 21224 direct fr 3 20917 21990 direct fr 1 22275 23123 complement fr 2 23024 23818 complement fr 1 23754 24506 complement fr 2 24594 25337 complement fr 2 25256 25405 complement fr 1 25746 26750 complement fr 2 26635 27012 complement fr 3 27059 27622 complement fr 1 28001 29008 direct fr 2 29273 29569 complement fr 1 29567 30169 complement fr 1 29585 30097 direct fr 2 30420 31697 complement fr 2 31624 32793 complement fr 3 32622 33218 complement fr 2 32864 35494 complement fr 1 35565 36221 complement fr 2 36260 36487 direct fr 2 36439 39342 direct fr 1 37330 37878 complement fr 3 39177 39638 direct fr 3 39354 39983 complement fr 2 39781 40410 complement fr 3 40366 40806 direct fr 1 40461 41618 direct fr 3 40804 41085 direct fr 1 41695 41961 direct fr 1 41898 44375 direct fr 3 44409 44696 direct fr 3 44697 45641 complement fr 2 45653 46057 complement fr 1 46150 48684 direct fr 1 46177 46386 complement fr 3 47086 47487 complement fr 3 47896 48336 complement fr 3 48748 48987 complement fr 3 48985 50226 complement fr 3 50949 51521 direct fr 3 51583 52377 direct fr 1 52541 52846 direct fr 2 53051 54232 complement fr 1 54374 55105 complement fr 1 55198 55650 complement fr 3 55622 56617 complement fr 1 56713 57345 complement fr 3 57374 58363 direct fr 2 58397 58651 direct fr 2 58564 59169 direct fr 1 58929 59444 direct fr 3 59246 60763 direct fr 2 60107 60634 complement fr 1 60760 61203 complement fr 3 61170 62117 complement fr 2 62127 62651 complement fr 2 62566 65262 complement fr 3 65377 65592 complement fr 3 65586 66077 complement fr 2 66436 66738 direct fr 1 66671 68233 direct fr 2 68294 69421 complement fr 1 69594 70661 complement fr 2 70642 71961 complement fr 3 72026 72817 complement fr 1 72736 73122 direct fr 1 73041 73637 direct fr 3 73709 74206 complement fr 1 74109 74303 direct fr 3 74367 75431 direct fr 3 75429 75617 direct fr 3 75651 76139 direct fr 3 76236 76547 direct fr 3 76568 76894 complement fr 1 76845 77333 direct fr 3 76860 77453 complement fr 2 77293 79014 direct fr 1 78288 78455 complement fr 2 78786 79916 direct fr 3 79762 81282 direct fr 1 79987 80229 complement fr 3 81280 82302 direct fr 1 81439 82299 complement fr 3 82191 84383 direct fr 3 84301 88746 direct fr 1 84406 84636 complement fr 3 88744 90801 direct fr 1 90845 92863 complement fr 1 93281 93640 direct fr 2 93631 93966 direct fr 1 94030 94473 direct fr 1 94471 94809 direct fr 1 94819 95151 direct fr 1 95044 95445 complement fr 3 95148 95684 complement fr 2 95186 95446 direct fr 2 95424 96599 direct fr 3 95443 95649 complement fr 3 95742 96533 complement fr 2 96531 96710 complement fr 2 96813 98168 direct fr 3 98174 98938 complement fr 1 98941 99783 complement fr 3 99100 100065 direct fr 1 100077 100223 direct fr 3 100221 101198 direct fr 3 101204 101452 direct fr 2 101449 101973 complement fr 3 101955 102674 complement fr 2 102423 102845 direct fr 3 102779 103030 direct fr 2 102829 103497 direct fr 1 103144 103623 complement fr 3 103550 104227 direct fr 2 104064 104549 direct fr 3 104407 105153 complement fr 3 104566 105360 direct fr 1 104985 107783 direct fr 3 106560 107405 complement fr 2 107871 108326 direct fr 3 108324 108935 direct fr 3 108933 109307 direct fr 3 109305 109775 direct fr 3 109381 110442 direct fr 1 109908 111437 direct fr 3 110874 111122 complement fr 2 111474 113150 complement fr 2 112236 112913 direct fr 3 112715 113422 direct fr 2 113038 113973 direct fr 1 113926 114480 complement fr 3 114004 114738 direct fr 1 114543 114869 direct fr 3 114634 114951 complement fr 3 114851 115531 direct fr 2 115486 116064 direct fr 1 115630 116307 complement fr 3 116083 116511 direct fr 1 116335 116616 complement fr 3 116604 117869 direct fr 3 117912 118532 complement fr 2 118568 118933 complement fr 1 118988 120445 direct fr 2 120449 120931 complement fr 1 120957 121787 direct fr 3 121734 122414 complement fr 2 122450 124741 direct fr 2 122816 124111 complement fr 1 124109 124828 complement fr 1 124738 125154 complement fr 3 125010 125291 direct fr 3 125301 125840 complement fr 2 125340 126416 direct fr 3 126479 126835 direct fr 2 126557 126976 complement fr 1 126863 127849 direct fr 2 127855 128775 direct fr 1 127888 128835 complement fr 3 128889 129686 direct fr 3 129740 130261 direct fr 2 130259 131284 direct fr 2 131299 131673 direct fr 1 131988 132449 direct fr 3 132156 132668 complement fr 2 132685 133263 direct fr 1 133867 135150 complement fr 3 135471 137633 complement fr 2 135876 136685 direct fr 3 136683 137795 direct fr 3 137898 138404 complement fr 2 138314 138814 direct fr 2 138323 139084 complement fr 1 138646 139593 complement fr 3 139824 140447 direct fr 3 140737 141999 direct fr 1 141968 142492 complement fr 1 142674 143426 direct fr 3 143442 144533 complement fr 2 144279 144500 direct fr 3 144649 148290 complement fr 3 146215 146616 direct fr 1 146638 147396 direct fr 1 148288 151203 complement fr 3 151201 151938 complement fr 3 151815 155255 complement fr 2 152727 153467 direct fr 3 155105 155299 complement fr 1 POSSIBLE SEQUENCE FRAMESHIFTS DETECTED From To Frame Frame At base... ----- ----- ---------- 1 3 9588 +/- 11 bp (direct) -------------------- ABOUT THE MATRIX USED: Training set derived by GeneMarkS, 4.6a Fri Apr 20 16:40:09 2007