LOCUS       NC_006298               5178 bp    DNA     circular BCT 27-JUN-2007
DEFINITION  Haemophilus somnus 129PT plasmid pHS129, complete sequence.
ACCESSION   NC_006298
VERSION     NC_006298.1  GI:52421262
KEYWORDS    .
SOURCE      Haemophilus somnus 129PT
  ORGANISM  Haemophilus somnus 129PT
            Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Histophilus.
REFERENCE   1  (bases 1 to 5178)
  AUTHORS   Challacombe,J.F., Duncan,A.J., Brettin,T.S., Bruce,D., Chertkov,O.,
            Detter,J.C., Han,C.S., Misra,M., Richardson,P., Tapia,R.,
            Thayer,N., Xie,G. and Inzana,T.J.
  TITLE     Complete genome sequence of Haemophilus somnus (Histophilus somni)
            strain 129Pt and comparison to Haemophilus ducreyi 35000HP and
            Haemophilus influenzae Rd
  JOURNAL   J. Bacteriol. 189 (5), 1890-1898 (2007)
   PUBMED   17172329
REFERENCE   2  (bases 1 to 5178)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-SEP-2004) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 5178)
  CONSRTM   Joint Genome Institute Microbial Sequencing, Finishing and
            Annotation Team
  TITLE     Direct Submission
  JOURNAL   Submitted (02-SEP-2004) Joint Genome Institute, Department of
            Energy, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CP000019.
            Haemophilus somnus strain 129Pt was isolated from the prepuce of a
            healthy bull at the Washington State Animal Disease Diagnostic
            Laboratory.  This strain lacks several known virulence attributes
            and is relatively avirulent in challenge models. In general H.
            somnus is the cause of a variety of systemic diseases in cattle,
            including thrombotic-meningoencephalitis, pneumonia, abortion and
            other reproductive diseases, arthritis, myocarditis, and
            septicemia. Plasmid and fosmid libraries of H.somnus (strain 129Pt)
            were prepared and shotgun sequencing was performed at the JGI
            Production Genomics Facility (JGI-PGF) in WalnutCreek, CA. to a
            coverage of 6x.  Draft reads produced one contig with reads from
            only plasmid libraries and one gap closed by PCR. Gene predictions
            were performed using Glimmer and basic analysis was performed by
            searching the coding sequences against the Pfam, BLOCKS, COGS and
            PDB databases. Six genes have been annotated and two plasmid
            replication proteins identified.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5178
                     /organism="Haemophilus somnus 129PT"
                     /mol_type="genomic DNA"
                     /strain="129PT"
                     /db_xref="taxon:205914"
                     /plasmid="pHS129"
     gene            complement(join(5079..5178,1..107))
                     /locus_tag="HS_p06"
                     /db_xref="GeneID:3021849"
     CDS             complement(join(5079..5178,1..107))
                     /locus_tag="HS_p06"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_874357.1"
                     /db_xref="GI:118216075"
                     /db_xref="GeneID:3021849"
                     /translation="MEKLAMRTQTKSQQSQAVFQEKILSLFEKSLTEEQRFLQDVMAG
                     KIKLIPHEEVMEKLEFVLKNGLQR"
     gene            complement(341..547)
                     /locus_tag="HS_p01"
                     /db_xref="GeneID:3021847"
     CDS             complement(341..547)
                     /locus_tag="HS_p01"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_087174.1"
                     /db_xref="GI:52421263"
                     /db_xref="GeneID:3021847"
                     /translation="MNVVIKNRIKSMISAHASNKIENVDMGDEEFASMLERAKSPISD
                     EEFAFQEISRVYSECGLSYVKSAV"
     gene            complement(558..1529)
                     /gene="rep"
                     /locus_tag="HS_p02"
                     /db_xref="GeneID:3021852"
     CDS             complement(558..1529)
                     /gene="rep"
                     /locus_tag="HS_p02"
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="YP_087175.1"
                     /db_xref="GI:52421264"
                     /db_xref="GeneID:3021852"
                     /translation="MNDLIIRKSHPIVEAGYKLTIAEQRIILLSLAKLDNRNIENSNV
                     TLYVKDYAEAFNLSETSAYSELERASKRLYDRSIILKGEDETTEFRWIESRTKYHKGE
                     GRISFQFSRRVMPYLFELDKRLGFTQYELLSVSGFKSAYSIRMYELAIKLLGMRNQQV
                     EIDELRRILQLDDKYQEFKRLKRDVINLACNEINEKSDLLLNIEPVKRGRKIIALEFQ
                     IAKKAKSKKAEPTPEGTRKIHGVFAEIPRPQVVKGSQAETDWVNENYTRAVKQMREKG
                     ILKSRFIEDELSTLPTEWLKVIKKYTSIINRSLSREISAELHTRKNL"
     gene            3309..4280
                     /gene="rep"
                     /locus_tag="HS_p03"
                     /db_xref="GeneID:3021850"
     CDS             3309..4280
                     /gene="rep"
                     /locus_tag="HS_p03"
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="YP_087176.1"
                     /db_xref="GI:52421265"
                     /db_xref="GeneID:3021850"
                     /translation="MNKLTIYKSNDLVEAGYRLSLAEQRMIVLSLGQIDSRDPKQKHV
                     TLYAKDYAKQWGVNEDNAMREIKQASKRLFERYITLKNDDETRKFRWIQESVEHHKGE
                     GRVSFTFSERILPFLFELDFKLGVTKYELLSVSGFSSVYSFRLYELAIKLLGMRNQVI
                     DLDEIRRILQLENKYPEYKEFNKFVLKPSLSDINEKSDLLLNIEPVKRGRKIVALEFQ
                     IAKKAKSKKAEPTPEGTRKIHGVFAEIPRPQVVKGSQAETDWVNENYTRAVKQMREKG
                     ILKSRFIEDELSTLPTEWLKVIKKYTSIINRSLSREISAELHTRKNL"
     gene            4327..4563
                     /locus_tag="HS_p04"
                     /db_xref="GeneID:3021848"
     CDS             4327..4563
                     /locus_tag="HS_p04"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_087177.1"
                     /db_xref="GI:52421266"
                     /db_xref="GeneID:3021848"
                     /translation="MSWLRLKRGNLDFMNDEKLTPEVLDRRAYHVRNALASFALEGEY
                     PSNEAEDLFNKFASGEIETMDELRVQINLLYSED"
     gene            complement(4798..5079)
                     /locus_tag="HS_p05"
                     /db_xref="GeneID:3021851"
     CDS             complement(4798..5079)
                     /locus_tag="HS_p05"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_087178.1"
                     /db_xref="GI:52421267"
                     /db_xref="GeneID:3021851"
                     /translation="MKFDYLIFWSEKAEAKLLDKADYIFHDSKNEMIAEKFLNTMRSF
                     AEKLRYVAAAYADGDFHIYPLKYGHSVKFIVIEDIVIIADFLPKGSNLH"
ORIGIN      
        1 cgttgttctt ccgttaaaga tttctcaaac aaggataaaa tcttttcttg aaaaacggct
       61 tgtgattgct gtgatttagt ttgtgtacgc attgctaatt tctccaagtt tattgacctt
      121 ttcgttttaa aatcgcttac tcaatttttc aattgtatct ctgttagcaa aaaatattat
      181 accgtgatta aatgggtttt aatattgttc tcgatttttc gggtaagtta ttgacatcct
      241 ccccctgcct ttaggcgggg ggaggatgtc aataactaat acaggtattt caccattctt
      301 atgaggatag acatgagaca gataagaggc ttcctcctca tcataccgcc gacttgacat
      361 aacttaatcc acactcacta taaactctac ttatttcttg aaaagcaaac tcctcatcac
      421 taattggaga ttttgctctt tccaacatag aagcaaattc ctcatccccc atatctacat
      481 tttctatttt attgcttgca tgtgcagaaa tcatagattt aattctgttc ttgataacaa
      541 cgttcatttg actttcctta taaatttttc ctggtatgta attcagctga aatttcccgt
      601 gatagcgatc gattgatgat acttgtatat tttttaatga ccttaagcca ttctgttggc
      661 agtgtagaaa gttcatcctc aataaatcga gattttaaaa tccctttttc ccgcatttgc
      721 ttaactgccc gtgtataatt ttcgtttacc caatctgttt ccgcttgaga acctttaaca
      781 acctgtgggc gtggtatttc agcaaataca ccgtgaattt tacgagtacc ttcgggcgtt
      841 ggttcggctt tttttgactt cgcttttttg gctatttgaa attctaacgc tataattttt
      901 cgaccacgtt taacaggctc gatatttagc agtaaatcag atttttcgtt aatttcatta
      961 cacgccaaat tgattacatc acgctttaaa cgcttaaatt cttgatactt atcatcaagt
     1021 tgtaaaattc gtctaagttc atcaatttca acttgctgat ttcgcatacc taacagcttg
     1081 atcgctaatt cgtacatacg aatagaatac gcacttttaa aaccactaac gcttaaaagc
     1141 tcgtattgcg taaaacctaa tcgcttatct aattcaaata aatacggcat aactctgcga
     1201 ctaaattgga aagaaattcg cccttcccct ttatggtatt ttgtgcgact ttcgatccat
     1261 cgaaattccg ttgtttcatc ttcgcctttt aaaataatcg aacgatcata caagcgtttt
     1321 gacgctcgtt ctaattcaga ataagccgat gtttcactta aattaaacgc ttccgcataa
     1381 tctttaacat atagcgttac gtttgaattt tcgatatttc tattatccaa tttggcaagg
     1441 cttaatagga taatccgctg ttctgcaatc gttaatttat aacctgcttc cacaattggg
     1501 tgcgattttc taataattaa atcgttcata aatcaacctt acagtgatag gatttagtgt
     1561 attggtgcta taatatcata aaacagcacc aatacaccaa aaaatagcac ctttaacacc
     1621 aaaaaatagc acctttaaca ccaaaaaata gcacctttaa caccaaaaaa tagcaccttt
     1681 aaatctcgca agccttatat atcaaggctt gccgaagtca gaaagaaaga aagaaagaaa
     1741 gaaagaaaga aataaggctg tcgccttatt ttttcttttt ttttgcagaa aagtgccaaa
     1801 cttggcacca aagttcgggg attagttaaa tacgacctaa aggacgtggt tttacggcac
     1861 gattagataa acctattctt cgattttaaa gcatctattt gagctgtaga gatttttttt
     1921 aagggtaagg tatactaccc taccacttta ttaaattaat gctttaatgc tcgatttaga
     1981 gctaaatttt aaatagtact aaaaatcaac agacgaataa tacaaaaaaa tactatttca
     2041 gaaataaaaa aacttaacta gaacattttt tgactttttt acttctggag ttatacatta
     2101 aaatgtgggc aggaaagatt cgatttttga tactttgcca aaaaatttat cagacagtgc
     2161 cgtaaaacca cgtcctttag agcgtggata taaggcacaa atatgatata cttcttgctg
     2221 ctaacagagg tcgctttaga ctctcaatga cggcataatc agggcaggac gtgcccgtag
     2281 cgtctgtgaa gtgaatcgca ttggcggtca gcagcagaaa cccaccgaga gtagcccatt
     2341 gcttgcaatg ggagctggta ggaatctcct tgctttagct aggggaggac gtcaacaagg
     2401 tgaaaaaata caatgtcgaa aatgagaaaa tccacgttaa aacgtggatt ttctcttaaa
     2461 tagaccccga atacacttac caaggcatcg caccttactc atttctaagc cgtcctatga
     2521 tcgatttcat cgggttgcca taggttgtat tagtattatg gagtcttttc ttaatatgtc
     2581 aagtttacta ttgatgcctg ttcatcactt ttggtgtaaa aactctgaag gacaagatat
     2641 aggatttgag cctatggcga atacatccga gtaaagtgga tttattttat ttcataaaat
     2701 aaggccaact ttacatatct tgcccactct tttaagtaaa cttttaatat acacaacgta
     2761 gtatctaggt ataaaaaagg ttttatttag tattattagg ttttatttag tattattagg
     2821 ttttatttgg tattaccaaa gtttaaaaaa gttttttcta gtgtaaaaaa gataaaaaaa
     2881 tagggctgaa agccccaaaa gagccgatag gctctatatt tttgtttttt agtttttttc
     2941 ggtttctttt tttatataac aataagttaa aaacttatac gactagaaat ttcctgttat
     3001 cgacttgatg tttaaattta tttaactagg tgttttctgc aaaaaaaaga aaaaataagg
     3061 cgacagcctt atttctttct ttctttcttt ctttctttct ttctgacttc ggcaagcctt
     3121 gatatataag gcttgcgaga tttaaaggtg gtgtaattta cggttaaagg tggtgtaatt
     3181 tacggttaaa ggtggtgtaa tttacggtta aaggtggtgt aatttacggt taaaggtggt
     3241 gtaatttgac attaccactt aaatgagtgt aacatctacc gtaaatctca ccgcttaaag
     3301 aatgttttat gaacaaatta accatttata aatcgaatga ccttgtagaa gctggctatc
     3361 gccttagcct tgctgaacaa cgaatgattg tgcttagttt ggggcaaatt gatagccgtg
     3421 atcctaaaca gaaacacgtt accctttatg caaaagatta tgcaaagcaa tggggggtaa
     3481 atgaagataa cgcaatgcgt gaaataaaac aggcaagcaa aaggcttttt gagcgttaca
     3541 tcacattaaa aaatgatgat gaaacgagaa aattcaggtg gatacaggaa agcgtagaac
     3601 accataaagg tgaagggcgt gtatcattca cttttagtga aaggatcttg ccatttttat
     3661 ttgagcttga ctttaaatta ggcgtaacaa aatatgaatt attgagtgtt tcaggtttct
     3721 ctagtgtgta ttcttttagg ctttatgagc ttgcaataaa attattggga atgagaaatc
     3781 aggttattga tttagacgaa attagacgta ttttgcaatt agaaaataaa taccctgaat
     3841 ataaagaatt taacaagttt gttctgaagc cgtccttatc cgacatcaac gaaaaatcgg
     3901 atcttttgct aaatatcgag cctgttaaac gtggtcgaaa aattgtagcg ttagaatttc
     3961 aaatagccaa aaaagcgaag tcaaaaaaag ccgaaccaac gcccgaaggt actcgtaaaa
     4021 ttcacggtgt atttgctgaa ataccacgcc cacaggttgt taaaggttct caagcggaaa
     4081 cagattgggt aaacgaaaat tatacacggg cagttaagca aatgcgggaa aaagggattt
     4141 taaaatctcg atttattgag gatgaacttt ctacactgcc aacagaatgg cttaaggtca
     4201 ttaaaaaata tacaagtatc atcaatcgat cgctatcacg ggaaatttca gctgaattac
     4261 ataccaggaa aaatttataa cttacccgaa aaatcgagaa caatattaaa acccatattg
     4321 tagattgtga gttggttaag attgaagaga gggaatttag attttatgaa tgatgaaaaa
     4381 ttaacgccag aagttttgga tcgacgggca taccatgtaa gaaatgccct ggctagtttt
     4441 gctttggaag gggaatatcc ctctaatgag gcggaggatc tatttaataa atttgcttct
     4501 ggtgaaattg aaaccatgga tgaactgcga gttcaaatta atttattgta ttctgaagat
     4561 taggaaggta aaaatggcaa ctgtagttca aaaagatgtt ttaattgagg cgattgccca
     4621 ggttcaaggt tatttattac gtagcttacc ctcctctgac tctatgaatg atgatgaact
     4681 atttttgtgt gagctacgtg agaaaattta tagcactcat cgaataataa ggcaccatca
     4741 catctagatt gtagcattgc gaaatgagaa agggagttaa aactaaaact acaaccacta
     4801 atgtagattt gaaccttttg gtaagaaatc agcaatgatg acaatatctt caatcacgat
     4861 gaactttact gaatgaccgt attttagcgg atagatatga aaatcaccgt cagcgtaagc
     4921 tgctgcaaca taacgcaatt tttccgcaaa cgaacgcata gtatttaaaa atttttctgc
     4981 aatcatttcg tttttactgt cgtgaaaaat gtaatctgct ttgtctaata atttggcttc
     5041 agccttttca gaccaaaaaa taagataatc aaatttcatt agcgttgcag tccgtttttt
     5101 aatacaaact caagtttttc cattacttcc tcgtgaggaa ttagcttgat ttttcctgcc
     5161 atcacatctt gtaaaaaa
//
