GENEMARK PREDICTIONS Sequence: gi|58616422|ref|NC_006824.1| Azoarcus sp. EbN1 plasmid 2, complete sequence Sequence file: NC_006824.fna Sequence length: 223670 GC Content: 63.11% Window length: 96 Window step: 12 Threshold value: 0.500 --- Matrix: - Matrix author: - Matrix order: 2 List of Open reading frames predicted as CDSs, shown with alternate starts (regions from start to stop codon w/ coding function >0.50) Left Right DNA Coding Avg Start end end Strand Frame Prob Prob -------- -------- ---------- ----- ---- ---- 45 1877 direct fr 3 0.89 .... 105 1877 direct fr 3 0.92 0.01 270 1877 direct fr 3 0.96 0.01 273 1877 direct fr 3 0.96 0.00 279 1877 direct fr 3 0.96 0.02 2089 3246 direct fr 1 0.93 0.03 2182 3246 direct fr 1 0.94 0.01 2203 3246 direct fr 1 0.93 0.01 2269 3246 direct fr 1 0.93 0.03 3188 4240 direct fr 2 0.73 0.00 3257 4240 direct fr 2 0.78 0.09 3362 4240 direct fr 2 0.83 0.73 3443 4240 direct fr 2 0.83 0.47 3470 4240 direct fr 2 0.82 0.29 4287 4853 direct fr 3 0.79 0.01 4299 4853 direct fr 3 0.80 0.05 4353 4853 direct fr 3 0.84 0.84 4377 4853 direct fr 3 0.84 0.01 4389 4853 direct fr 3 0.84 0.01 4413 4853 direct fr 3 0.88 0.01 4452 4853 direct fr 3 0.90 0.97 4872 6677 direct fr 3 0.89 0.01 4932 6677 direct fr 3 0.92 0.09 4971 6677 direct fr 3 0.93 0.70 5043 6677 direct fr 3 0.93 0.00 5067 6677 direct fr 3 0.93 0.02 6674 8542 direct fr 2 0.93 0.96 6689 8542 direct fr 2 0.94 0.88 6788 8542 direct fr 2 0.95 0.01 6794 8542 direct fr 2 0.95 0.01 6800 8542 direct fr 2 0.95 0.00 8461 9594 direct fr 1 0.90 0.00 8524 9594 direct fr 1 0.95 0.96 8539 9594 direct fr 1 0.95 0.94 8674 9594 direct fr 1 0.95 0.65 8677 9594 direct fr 1 0.95 0.75 9661 10056 direct fr 1 0.78 0.93 9664 10056 direct fr 1 0.78 0.95 9691 10056 direct fr 1 0.83 0.98 9712 10056 direct fr 1 0.86 0.05 9739 10056 direct fr 1 0.85 0.02 9766 10056 direct fr 1 0.83 0.03 10211 10351 direct fr 2 0.56 0.94 10283 10351 direct fr 2 0.62 0.22 10689 10910 direct fr 3 0.75 1.00 10695 10910 direct fr 3 0.74 1.00 12076 12411 direct fr 1 0.72 0.36 12103 12411 direct fr 1 0.71 0.01 12136 12411 direct fr 1 0.69 0.39 12707 13666 direct fr 2 0.76 0.88 12770 13666 direct fr 2 0.79 0.38 12821 13666 direct fr 2 0.77 0.05 12869 13666 direct fr 2 0.76 0.23 13446 14105 direct fr 3 0.51 0.01 13563 14105 direct fr 3 0.62 0.00 13680 14105 direct fr 3 0.77 0.40 13692 14105 direct fr 3 0.79 0.88 13968 14105 direct fr 3 0.70 0.06 13995 14105 direct fr 3 0.60 0.01 13998 14105 direct fr 3 0.60 0.00 14108 14419 direct fr 2 0.70 0.09 14162 14419 direct fr 2 0.79 0.81 14183 14419 direct fr 2 0.78 0.49 14186 14419 direct fr 2 0.77 0.19 14263 16953 direct fr 1 0.88 0.00 14416 16953 direct fr 1 0.93 0.54 14569 16953 direct fr 1 0.95 0.12 14584 16953 direct fr 1 0.95 0.03 14590 16953 direct fr 1 0.95 0.01 16950 17735 direct fr 3 0.87 0.58 16968 17735 direct fr 3 0.88 0.99 17043 17735 direct fr 3 0.90 0.05 17115 17735 direct fr 3 0.89 0.02 17199 17735 direct fr 3 0.87 0.03 17753 18649 direct fr 2 0.89 0.13 17774 18649 direct fr 2 0.92 0.93 17807 18649 direct fr 2 0.94 0.49 17939 18649 direct fr 2 0.94 0.79 17960 18649 direct fr 2 0.93 0.30 18646 19143 direct fr 1 0.63 0.52 18652 19143 direct fr 1 0.64 0.19 18898 19143 direct fr 1 0.59 0.00 18988 19143 direct fr 1 0.66 0.73 19140 20537 direct fr 3 0.84 0.40 19149 20537 direct fr 3 0.84 0.23 19170 20537 direct fr 3 0.86 0.22 19197 20537 direct fr 3 0.87 0.67 19215 20537 direct fr 3 0.86 0.67 19239 20537 direct fr 3 0.86 0.20 20556 21314 direct fr 3 0.81 0.01 20562 21314 direct fr 3 0.82 0.01 20673 21314 direct fr 3 0.88 0.06 20766 21314 direct fr 3 0.86 0.48 20820 21314 direct fr 3 0.84 0.10 21329 21559 direct fr 2 0.53 0.21 21365 21559 direct fr 2 0.62 0.20 21377 21559 direct fr 2 0.65 0.20 21425 21559 direct fr 2 0.66 0.73 21431 21559 direct fr 2 0.66 0.68 21396 23216 direct fr 3 0.65 0.00 21441 23216 direct fr 3 0.67 0.00 21507 23216 direct fr 3 0.70 0.00 21522 23216 direct fr 3 0.70 0.00 21564 23216 direct fr 3 0.72 0.06 21570 23216 direct fr 3 0.72 0.09 21603 23216 direct fr 3 0.74 0.97 21669 23216 direct fr 3 0.73 0.04 21765 23216 direct fr 3 0.72 0.12 21774 23216 direct fr 3 0.73 0.76 23213 23812 direct fr 2 0.56 0.36 23234 23812 direct fr 2 0.58 0.98 23255 23812 direct fr 2 0.59 0.50 23267 23812 direct fr 2 0.60 0.61 23270 23812 direct fr 2 0.59 0.46 23504 23812 direct fr 2 0.68 0.07 23522 23812 direct fr 2 0.72 0.02 23579 23812 direct fr 2 0.77 0.72 23797 24414 direct fr 1 0.73 0.34 23815 24414 direct fr 1 0.74 0.97 23863 24414 direct fr 1 0.75 0.01 23884 24414 direct fr 1 0.74 0.41 23896 24414 direct fr 1 0.74 0.18 24216 25109 direct fr 3 0.67 0.00 24411 25109 direct fr 3 0.82 0.82 24474 25109 direct fr 3 0.83 0.04 24522 25109 direct fr 3 0.82 0.43 24600 25109 direct fr 3 0.80 0.09 25716 26015 direct fr 3 0.77 0.37 25746 26015 direct fr 3 0.84 0.18 25773 26015 direct fr 3 0.82 0.68 25776 26015 direct fr 3 0.82 0.27 26017 27840 direct fr 1 0.71 0.03 26086 27840 direct fr 1 0.73 0.95 26128 27840 direct fr 1 0.72 0.05 26302 27840 direct fr 1 0.70 0.02 27915 30059 direct fr 3 0.93 0.99 27996 30059 direct fr 3 0.95 0.13 28041 30059 direct fr 3 0.95 0.00 28140 30059 direct fr 3 0.94 0.00 30080 31702 direct fr 2 0.93 0.59 30098 31702 direct fr 2 0.95 0.98 30158 31702 direct fr 2 0.95 0.02 30410 31702 direct fr 2 0.95 0.45 30431 31702 direct fr 2 0.95 0.08 33018 34889 direct fr 3 0.62 0.68 33063 34889 direct fr 3 0.63 0.17 33075 34889 direct fr 3 0.63 0.00 33189 34889 direct fr 3 0.61 0.12 35107 35403 direct fr 1 0.63 0.00 35131 35403 direct fr 1 0.68 0.01 35161 35403 direct fr 1 0.78 0.62 35218 35403 direct fr 1 0.79 0.44 35257 35403 direct fr 1 0.73 0.01 35269 35403 direct fr 1 0.71 0.01 35410 35823 direct fr 1 0.80 0.95 35419 35823 direct fr 1 0.82 0.99 35590 35823 direct fr 1 0.82 0.93 35605 35823 direct fr 1 0.81 0.92 35608 35823 direct fr 1 0.81 0.75 35711 36340 direct fr 2 0.53 0.00 35867 36340 direct fr 2 0.69 0.02 36077 36340 direct fr 2 0.79 0.96 36161 36340 direct fr 2 0.75 0.38 36176 36340 direct fr 2 0.74 0.11 36337 37323 direct fr 1 0.86 0.00 36376 37323 direct fr 1 0.90 0.26 36505 37323 direct fr 1 0.93 0.08 36571 37323 direct fr 1 0.92 0.08 36652 37323 direct fr 1 0.91 0.04 37497 37640 complement fr 2 0.61 0.92 37739 38227 direct fr 2 0.55 0.00 37844 38227 direct fr 2 0.70 0.85 37856 38227 direct fr 2 0.72 0.84 37880 38227 direct fr 2 0.74 0.43 37913 38227 direct fr 2 0.73 0.12 38033 38227 direct fr 2 0.62 0.15 38281 39630 direct fr 1 0.66 0.01 38332 39630 direct fr 1 0.69 0.00 38800 39630 direct fr 1 0.74 0.37 38848 39630 direct fr 1 0.73 0.24 38980 39630 direct fr 1 0.69 0.23 39007 39630 direct fr 1 0.68 0.17 39746 40090 direct fr 2 0.90 0.79 39866 40090 direct fr 2 0.92 0.02 40087 40854 complement fr 3 0.56 0.57 40087 40686 complement fr 3 0.50 0.02 40087 40413 complement fr 3 0.57 0.01 40087 40290 complement fr 3 0.59 0.46 40867 42450 complement fr 3 0.83 0.14 40867 42324 complement fr 3 0.85 0.74 40867 42258 complement fr 3 0.84 0.16 40867 42108 complement fr 3 0.83 0.43 43042 43626 direct fr 1 0.72 0.02 43153 43626 direct fr 1 0.83 0.70 43177 43626 direct fr 1 0.83 0.42 43249 43626 direct fr 1 0.80 0.00 43869 44081 direct fr 3 0.62 0.98 43914 44081 direct fr 3 0.72 0.03 43989 44081 direct fr 3 0.54 0.62 44078 44800 direct fr 2 0.78 0.08 44081 44800 direct fr 2 0.78 0.10 44123 44800 direct fr 2 0.81 0.28 44246 44800 direct fr 2 0.82 0.06 44249 44800 direct fr 2 0.82 0.04 44913 46307 direct fr 3 0.85 0.64 45075 46307 direct fr 3 0.86 0.51 45342 46307 direct fr 3 0.93 0.44 45528 46307 direct fr 3 0.91 0.05 47373 51032 complement fr 2 0.90 0.00 47373 50978 complement fr 2 0.91 0.70 47373 50804 complement fr 2 0.93 0.02 47373 50774 complement fr 2 0.93 0.03 47373 50618 complement fr 2 0.92 0.02 50983 51228 complement fr 3 0.70 0.96 50983 51222 complement fr 3 0.70 0.94 50983 51177 complement fr 3 0.69 0.08 51225 53309 complement fr 2 0.92 0.06 51225 53204 complement fr 2 0.93 0.07 51225 53183 complement fr 2 0.93 0.25 51225 53072 complement fr 2 0.93 0.08 53324 53863 complement fr 1 0.69 0.94 53324 53830 complement fr 1 0.68 0.15 53324 53710 complement fr 1 0.69 0.15 53324 53596 complement fr 1 0.60 0.00 53860 55764 complement fr 3 0.87 0.65 53860 55752 complement fr 3 0.87 0.07 53860 55689 complement fr 3 0.87 0.13 55761 57983 complement fr 2 0.56 0.18 55761 57962 complement fr 2 0.57 0.91 55761 57926 complement fr 2 0.56 0.70 55761 57827 complement fr 2 0.54 0.12 55761 57722 complement fr 2 0.52 0.15 55761 57593 complement fr 2 0.53 0.11 58018 58413 complement fr 3 0.65 0.00 58018 58392 complement fr 3 0.68 0.01 58018 58341 complement fr 3 0.74 0.93 58018 58335 complement fr 3 0.74 0.93 58018 58284 complement fr 3 0.68 0.09 58768 59175 direct fr 1 0.69 0.97 58804 59175 direct fr 1 0.73 0.02 58864 59175 direct fr 1 0.68 0.71 58876 59175 direct fr 1 0.66 0.04 59175 59900 direct fr 3 0.80 0.84 59190 59900 direct fr 3 0.81 0.51 59226 59900 direct fr 3 0.82 0.04 59334 59900 direct fr 3 0.81 0.00 59897 60334 direct fr 2 0.76 0.99 59900 60334 direct fr 2 0.76 0.99 60008 60334 direct fr 2 0.78 0.38 60152 60334 direct fr 2 0.66 0.42 60155 60334 direct fr 2 0.66 0.50 60164 60334 direct fr 2 0.64 0.73 60538 61092 direct fr 1 0.72 0.97 60634 61092 direct fr 1 0.79 0.84 60649 61092 direct fr 1 0.78 0.23 60661 61092 direct fr 1 0.78 0.60 61159 61305 direct fr 1 0.66 0.84 61162 61305 direct fr 1 0.66 0.50 61439 61972 complement fr 1 0.61 0.35 61439 61960 complement fr 1 0.62 0.18 61439 61822 complement fr 1 0.76 0.19 61439 61759 complement fr 1 0.79 0.28 62049 64019 complement fr 2 0.77 0.00 62049 63980 complement fr 2 0.79 0.04 62049 63971 complement fr 2 0.79 0.12 62049 63854 complement fr 2 0.81 0.21 62049 63821 complement fr 2 0.80 0.00 62049 63797 complement fr 2 0.80 0.02 64216 65196 complement fr 3 0.53 0.01 64216 65124 complement fr 3 0.55 0.01 64216 65085 complement fr 3 0.57 0.00 64216 65058 complement fr 3 0.58 0.05 64216 64875 complement fr 3 0.68 0.92 64216 64854 complement fr 3 0.67 0.46 64216 64848 complement fr 3 0.67 0.17 65427 65801 direct fr 3 0.54 0.30 65749 66219 direct fr 1 0.89 0.10 65764 66219 direct fr 1 0.88 0.03 65869 66219 direct fr 1 0.85 0.36 66351 67571 complement fr 2 0.72 0.71 66351 67541 complement fr 2 0.74 0.47 66351 67535 complement fr 2 0.74 0.79 66351 67490 complement fr 2 0.74 0.08 66351 67463 complement fr 2 0.74 0.03 67568 68755 complement fr 1 0.84 0.86 67568 68671 complement fr 1 0.83 0.34 67568 68377 complement fr 1 0.83 0.51 67568 68359 complement fr 1 0.83 0.19 68783 70366 complement fr 1 0.98 0.94 68783 70333 complement fr 1 0.99 0.40 68783 70189 complement fr 1 0.98 0.01 68783 70165 complement fr 1 0.98 0.00 70416 71015 complement fr 2 0.84 0.20 70416 71000 complement fr 2 0.86 0.76 70416 70976 complement fr 2 0.87 0.96 70416 70973 complement fr 2 0.87 0.96 70416 70931 complement fr 2 0.86 0.04 71351 72274 complement fr 1 0.83 0.02 71351 72256 complement fr 1 0.84 0.00 71351 72247 complement fr 1 0.85 0.03 71351 72205 complement fr 1 0.88 0.71 71351 72148 complement fr 1 0.90 0.33 71351 72058 complement fr 1 0.88 0.51 71351 72049 complement fr 1 0.88 0.07 72467 73639 complement fr 1 0.51 0.01 72467 73615 complement fr 1 0.52 0.99 72467 73612 complement fr 1 0.52 0.98 72467 73579 complement fr 1 0.51 0.78 72467 73576 complement fr 1 0.51 0.57 72467 73240 complement fr 1 0.54 0.20 74091 75605 complement fr 2 0.86 0.02 74091 75470 complement fr 2 0.93 0.65 74091 75464 complement fr 2 0.93 0.81 74091 75428 complement fr 2 0.93 0.09 75666 76475 complement fr 2 0.83 0.62 75666 76430 complement fr 2 0.87 0.00 75666 76370 complement fr 2 0.92 0.57 75666 76352 complement fr 2 0.91 0.02 75666 76304 complement fr 2 0.91 0.30 76472 77329 complement fr 1 0.88 0.72 76472 77284 complement fr 1 0.92 0.40 76472 77191 complement fr 1 0.91 0.11 76472 77158 complement fr 1 0.91 0.08 77326 78459 complement fr 3 0.78 0.02 77326 78372 complement fr 3 0.85 0.00 77326 78327 complement fr 3 0.88 0.93 77326 78168 complement fr 3 0.92 0.00 77326 78018 complement fr 3 0.91 0.03 77326 77961 complement fr 3 0.90 0.00 78910 80493 complement fr 3 0.98 0.90 78910 80460 complement fr 3 0.98 0.72 78910 80316 complement fr 3 0.98 0.02 78910 80292 complement fr 3 0.98 0.00 80541 81140 complement fr 2 0.85 0.58 80541 81125 complement fr 2 0.86 0.96 80541 81101 complement fr 2 0.87 0.93 80541 81098 complement fr 2 0.87 0.91 80541 81056 complement fr 2 0.86 0.02 81579 81935 complement fr 2 0.62 0.87 81579 81908 complement fr 2 0.61 0.20 81579 81671 complement fr 2 0.55 0.88 82535 83182 direct fr 2 0.60 0.20 82538 83182 direct fr 2 0.61 0.10 82556 83182 direct fr 2 0.62 0.09 82559 83182 direct fr 2 0.62 0.01 82613 83182 direct fr 2 0.68 0.94 82625 83182 direct fr 2 0.69 0.98 82634 83182 direct fr 2 0.70 0.96 82673 83182 direct fr 2 0.68 0.01 83372 84730 complement fr 1 0.91 0.81 83372 84676 complement fr 1 0.92 0.28 83372 84637 complement fr 1 0.91 0.04 83372 84628 complement fr 1 0.91 0.01 84848 85291 complement fr 1 0.72 0.96 84848 85195 complement fr 1 0.75 0.81 84848 85180 complement fr 1 0.75 0.20 84848 85168 complement fr 1 0.76 0.39 84848 85132 complement fr 1 0.73 0.69 85955 87043 direct fr 2 0.91 0.89 85970 87043 direct fr 2 0.93 0.10 85976 87043 direct fr 2 0.93 0.02 86033 87043 direct fr 2 0.95 0.60 86045 87043 direct fr 2 0.95 0.91 86054 87043 direct fr 2 0.95 0.65 87040 87819 direct fr 1 0.95 0.95 87217 87819 direct fr 1 0.96 0.22 87352 87819 direct fr 1 0.95 0.17 87358 87819 direct fr 1 0.95 0.21 88276 89331 direct fr 1 0.87 0.93 88282 89331 direct fr 1 0.87 0.57 88450 89331 direct fr 1 0.85 0.15 89371 90063 direct fr 1 0.75 0.25 89431 90063 direct fr 1 0.82 0.01 89542 90063 direct fr 1 0.89 0.03 89581 90063 direct fr 1 0.88 0.16 89665 90063 direct fr 1 0.86 0.00 90113 90529 complement fr 1 0.50 0.00 90113 90496 complement fr 1 0.54 0.67 90636 91670 direct fr 3 0.89 0.14 90690 91670 direct fr 3 0.94 0.74 90693 91670 direct fr 3 0.94 0.44 90735 91670 direct fr 3 0.94 0.04 91892 92164 direct fr 2 0.55 0.09 91958 92164 direct fr 2 0.62 0.92 91988 92164 direct fr 2 0.58 0.06 92250 92372 complement fr 2 0.54 0.31 92758 93531 direct fr 1 0.55 0.00 92761 93531 direct fr 1 0.56 0.00 92797 93531 direct fr 1 0.59 0.54 93001 93531 direct fr 1 0.64 0.09 93145 93531 direct fr 1 0.56 0.21 93163 93531 direct fr 1 0.56 0.04 93653 95008 direct fr 2 0.92 0.02 93704 95008 direct fr 2 0.95 0.98 93743 95008 direct fr 2 0.95 0.05 93746 95008 direct fr 2 0.95 0.02 95273 96202 direct fr 2 0.80 0.01 95324 96202 direct fr 2 0.84 0.24 95345 96202 direct fr 2 0.86 0.84 95357 96202 direct fr 2 0.87 0.63 95558 96202 direct fr 2 0.83 0.12 95582 96202 direct fr 2 0.83 0.01 96212 97411 direct fr 2 0.68 0.97 96233 97411 direct fr 2 0.69 0.87 96314 97411 direct fr 2 0.69 0.10 96443 97411 direct fr 2 0.74 0.58 96557 97411 direct fr 2 0.73 0.00 96677 97411 direct fr 2 0.69 0.04 98479 98808 direct fr 1 0.52 0.02 98771 99547 complement fr 1 0.87 0.01 98771 99505 complement fr 1 0.90 0.83 98771 99499 complement fr 1 0.90 0.74 98771 99454 complement fr 1 0.90 0.17 99528 100298 complement fr 2 0.85 0.79 99528 100289 complement fr 2 0.86 0.81 99528 100028 complement fr 2 0.84 0.00 99528 100001 complement fr 2 0.83 0.02 99528 99941 complement fr 2 0.83 0.26 100415 100645 direct fr 2 0.80 0.05 100457 100645 direct fr 2 0.75 0.00 100490 100645 direct fr 2 0.70 0.62 101394 101558 direct fr 3 0.69 0.01 100684 101274 direct fr 1 0.69 0.00 100714 101274 direct fr 1 0.72 0.00 100777 101274 direct fr 1 0.82 0.00 100822 101274 direct fr 1 0.88 0.97 100867 101274 direct fr 1 0.94 0.03 100891 101274 direct fr 1 0.93 0.13 100942 101274 direct fr 1 0.92 0.22 101452 103632 direct fr 1 0.88 0.00 101548 103632 direct fr 1 0.92 0.43 101611 103632 direct fr 1 0.94 0.15 101635 103632 direct fr 1 0.94 0.07 101722 103632 direct fr 1 0.93 0.04 103609 104481 complement fr 3 0.84 0.00 103609 104469 complement fr 3 0.85 0.09 103609 104412 complement fr 3 0.91 0.86 103609 104391 complement fr 3 0.91 0.89 103609 104301 complement fr 3 0.91 0.23 103609 104286 complement fr 3 0.91 0.16 104826 104963 direct fr 3 0.55 0.67 104942 105814 direct fr 2 0.55 0.53 104960 105814 direct fr 2 0.54 0.30 105116 105814 direct fr 2 0.56 0.01 105179 105814 direct fr 2 0.57 0.34 105236 105814 direct fr 2 0.57 0.14 105863 107101 direct fr 2 0.61 0.17 105950 107101 direct fr 2 0.64 0.04 106043 107101 direct fr 2 0.69 0.45 106127 107101 direct fr 2 0.74 0.53 106166 107101 direct fr 2 0.75 0.51 106286 107101 direct fr 2 0.78 0.59 106367 107101 direct fr 2 0.77 0.08 107080 108042 direct fr 1 0.59 0.22 107098 108042 direct fr 1 0.60 0.71 107203 108042 direct fr 1 0.58 0.01 107455 108042 direct fr 1 0.58 0.01 107875 108042 direct fr 1 0.53 0.38 107964 109037 direct fr 3 0.72 0.02 108039 109037 direct fr 3 0.78 0.57 108096 109037 direct fr 3 0.78 0.29 108234 109037 direct fr 3 0.81 0.17 108270 109037 direct fr 3 0.80 0.30 109197 109397 direct fr 3 0.69 1.00 109230 109397 direct fr 3 0.72 0.05 109263 109397 direct fr 3 0.65 0.02 109299 109397 direct fr 3 0.53 0.02 109735 114192 direct fr 1 0.74 0.01 109867 114192 direct fr 1 0.75 0.12 109963 114192 direct fr 1 0.75 0.21 110032 114192 direct fr 1 0.75 0.30 114280 115635 complement fr 3 0.92 0.01 114280 115584 complement fr 3 0.94 0.98 114280 115545 complement fr 3 0.94 0.03 114280 115542 complement fr 3 0.94 0.01 115724 116551 direct fr 2 0.70 0.71 116039 116551 direct fr 2 0.65 0.61 116808 117299 direct fr 3 0.57 0.81 116838 117299 direct fr 3 0.61 0.50 116853 117299 direct fr 3 0.63 0.23 116859 117299 direct fr 3 0.62 0.03 116901 117299 direct fr 3 0.59 0.21 122390 122524 direct fr 2 0.51 0.40 122408 122524 direct fr 2 0.56 0.65 122417 122524 direct fr 2 0.58 0.70 122665 122976 complement fr 3 0.68 0.00 122665 122895 complement fr 3 0.59 0.46 122665 122871 complement fr 3 0.54 0.08 123097 124797 complement fr 3 0.92 0.99 123097 124719 complement fr 3 0.93 0.33 123097 124704 complement fr 3 0.93 0.03 123097 124656 complement fr 3 0.93 0.14 125194 126177 direct fr 1 0.53 0.46 125221 126177 direct fr 1 0.55 0.00 125257 126177 direct fr 1 0.57 0.02 125419 126177 direct fr 1 0.59 0.07 125590 126177 direct fr 1 0.64 0.62 125716 126177 direct fr 1 0.69 0.93 126174 127148 direct fr 3 0.76 0.43 126330 127148 direct fr 3 0.77 0.09 126603 127148 direct fr 3 0.70 0.51 126675 127148 direct fr 3 0.66 0.41 127414 129114 direct fr 1 0.89 0.99 127492 129114 direct fr 1 0.91 0.58 127507 129114 direct fr 1 0.91 0.02 127555 129114 direct fr 1 0.91 0.37 127594 129114 direct fr 1 0.92 0.09 129195 130037 direct fr 3 0.63 0.23 129321 130037 direct fr 3 0.60 0.08 129387 130037 direct fr 3 0.56 0.03 129402 130037 direct fr 3 0.55 0.06 129992 131065 complement fr 1 0.72 0.02 129992 130990 complement fr 1 0.78 0.63 129992 130933 complement fr 1 0.77 0.25 129992 130795 complement fr 1 0.79 0.11 130987 131949 complement fr 3 0.59 0.14 130987 131931 complement fr 3 0.60 0.73 130987 131826 complement fr 3 0.57 0.01 130987 131574 complement fr 3 0.56 0.02 130987 131154 complement fr 3 0.53 0.25 131928 133166 complement fr 2 0.61 0.26 131928 133079 complement fr 2 0.64 0.02 131928 132986 complement fr 2 0.69 0.46 131928 132902 complement fr 2 0.74 0.46 131928 132863 complement fr 2 0.74 0.47 131928 132743 complement fr 2 0.77 0.57 131928 132662 complement fr 2 0.76 0.14 131928 132653 complement fr 2 0.76 0.56 133215 134141 complement fr 2 0.77 0.00 133215 134099 complement fr 2 0.81 0.67 133215 134057 complement fr 2 0.80 0.83 133215 133976 complement fr 2 0.78 0.12 134092 134328 complement fr 3 0.55 0.00 134092 134271 complement fr 3 0.69 0.92 134092 134235 complement fr 3 0.68 0.20 134092 134232 complement fr 3 0.66 0.17 134336 134536 direct fr 2 0.60 0.96 134438 134536 direct fr 2 0.56 0.34 135761 135856 complement fr 1 0.51 0.20 136148 137236 direct fr 2 0.91 0.89 136163 137236 direct fr 2 0.92 0.10 136169 137236 direct fr 2 0.93 0.02 136226 137236 direct fr 2 0.94 0.74 136238 137236 direct fr 2 0.94 0.90 136247 137236 direct fr 2 0.94 0.64 137233 138012 direct fr 1 0.96 0.95 137410 138012 direct fr 1 0.97 0.22 137545 138012 direct fr 1 0.96 0.17 137551 138012 direct fr 1 0.96 0.21 138082 138306 complement fr 3 0.55 0.29 138554 139030 direct fr 2 0.59 0.04 138560 139030 direct fr 2 0.59 0.08 138737 139030 direct fr 2 0.76 0.01 138785 139030 direct fr 2 0.71 0.07 138821 139030 direct fr 2 0.67 0.01 139027 140319 direct fr 1 0.91 0.23 139126 140319 direct fr 1 0.93 0.65 139129 140319 direct fr 1 0.93 0.58 139153 140319 direct fr 1 0.93 0.05 140446 141489 complement fr 3 0.90 0.97 140446 141240 complement fr 3 0.95 0.10 140446 141222 complement fr 3 0.95 0.39 140446 140964 complement fr 3 0.92 0.01 141489 142256 complement fr 2 0.84 0.10 141489 142247 complement fr 2 0.86 0.33 141489 142202 complement fr 2 0.89 0.11 141489 142199 complement fr 2 0.88 0.11 141489 142154 complement fr 2 0.88 0.77 143337 144377 complement fr 2 0.64 0.00 143337 144296 complement fr 2 0.69 0.77 143337 144221 complement fr 2 0.70 0.05 143337 144158 complement fr 2 0.69 0.38 143337 144059 complement fr 2 0.66 0.92 143637 143876 direct fr 3 0.51 0.77 144341 144730 complement fr 1 0.57 0.43 144341 144688 complement fr 1 0.55 0.79 144805 145602 complement fr 3 0.82 0.98 144805 145572 complement fr 3 0.82 0.28 144805 145569 complement fr 3 0.82 0.11 145599 147095 complement fr 2 0.92 0.91 145599 147065 complement fr 2 0.94 0.67 145599 147008 complement fr 2 0.94 0.47 145599 146903 complement fr 2 0.95 0.96 145599 146810 complement fr 2 0.95 0.66 147947 148414 complement fr 1 0.76 0.13 147947 148261 complement fr 1 0.70 0.04 147947 148258 complement fr 1 0.69 0.02 148511 148708 complement fr 1 0.76 0.22 148511 148684 complement fr 1 0.86 0.95 148832 149587 complement fr 1 0.52 0.01 148832 149545 complement fr 1 0.55 0.00 148832 149344 complement fr 1 0.76 0.96 148832 149281 complement fr 1 0.75 0.05 148832 149044 complement fr 1 0.78 0.23 148832 149011 complement fr 1 0.74 0.40 149436 150137 complement fr 2 0.75 0.00 149436 150092 complement fr 2 0.80 0.04 149436 149810 complement fr 2 0.76 0.72 149436 149795 complement fr 2 0.74 0.46 149436 149570 complement fr 2 0.54 0.14 150085 150744 complement fr 3 0.81 0.57 150085 150603 complement fr 3 0.85 0.09 150085 150312 complement fr 3 0.72 0.60 150085 150258 complement fr 3 0.65 0.36 150920 151540 direct fr 2 0.55 0.00 151088 151540 direct fr 2 0.74 0.58 151124 151540 direct fr 2 0.78 0.33 151133 151540 direct fr 2 0.77 0.26 151217 151540 direct fr 2 0.75 0.57 151584 152903 direct fr 3 0.77 0.05 151611 152903 direct fr 3 0.79 0.31 151683 152903 direct fr 3 0.82 0.65 151740 152903 direct fr 3 0.82 0.71 151857 152903 direct fr 3 0.81 0.77 153003 153344 direct fr 3 0.52 0.50 154043 154363 direct fr 2 0.66 0.74 154058 154363 direct fr 2 0.72 0.71 154067 154363 direct fr 2 0.72 0.92 154115 154363 direct fr 2 0.77 0.01 154220 154363 direct fr 2 0.71 0.36 154241 154363 direct fr 2 0.65 0.03 154363 154722 direct fr 1 0.74 0.94 154384 154722 direct fr 1 0.79 0.72 154390 154722 direct fr 1 0.79 0.40 154417 154722 direct fr 1 0.77 0.08 154751 156367 direct fr 2 0.89 0.23 154889 156367 direct fr 2 0.94 0.21 154952 156367 direct fr 2 0.94 0.03 154973 156367 direct fr 2 0.93 0.00 156455 157543 direct fr 2 0.90 0.89 156470 157543 direct fr 2 0.92 0.10 156476 157543 direct fr 2 0.92 0.02 156533 157543 direct fr 2 0.93 0.74 156545 157543 direct fr 2 0.94 0.90 156554 157543 direct fr 2 0.94 0.64 157540 158319 direct fr 1 0.95 0.95 157717 158319 direct fr 1 0.97 0.22 157852 158319 direct fr 1 0.96 0.35 157858 158319 direct fr 1 0.96 0.21 158466 158828 direct fr 3 0.53 0.56 158954 159409 complement fr 1 0.70 0.83 158954 159352 complement fr 1 0.69 0.32 158954 159184 complement fr 1 0.64 0.02 158954 159160 complement fr 1 0.60 0.01 160560 161651 complement fr 2 0.61 0.93 160560 161633 complement fr 2 0.62 0.87 160560 161600 complement fr 2 0.62 0.01 160560 161573 complement fr 2 0.63 0.00 160560 161486 complement fr 2 0.67 0.68 160560 161024 complement fr 2 0.53 0.03 161653 162921 complement fr 3 0.80 0.01 161653 162849 complement fr 3 0.85 0.88 161653 162750 complement fr 3 0.87 0.82 161653 162738 complement fr 3 0.87 0.21 161653 162726 complement fr 3 0.87 0.01 163593 164624 direct fr 3 0.89 0.12 163647 164624 direct fr 3 0.94 0.84 163650 164624 direct fr 3 0.94 0.60 163674 164624 direct fr 3 0.94 0.27 164850 165263 complement fr 2 0.50 0.00 164850 165227 complement fr 2 0.55 0.01 164850 165119 complement fr 2 0.56 0.27 165260 166072 complement fr 1 0.60 0.00 165260 165841 complement fr 1 0.82 0.95 165260 165829 complement fr 1 0.83 0.96 165260 165769 complement fr 1 0.81 0.06 166437 166889 direct fr 3 0.56 0.91 166494 166889 direct fr 3 0.59 0.01 166551 166889 direct fr 3 0.53 0.88 166569 166889 direct fr 3 0.52 0.86 166792 167124 direct fr 1 0.70 0.10 166915 167124 direct fr 1 0.72 0.12 166948 167124 direct fr 1 0.66 0.00 166972 167124 direct fr 1 0.61 0.05 167262 168134 direct fr 3 0.85 0.00 167274 168134 direct fr 3 0.86 0.13 167331 168134 direct fr 3 0.92 0.78 167352 168134 direct fr 3 0.94 0.85 167442 168134 direct fr 3 0.95 0.23 167457 168134 direct fr 3 0.95 0.18 168111 170291 complement fr 2 0.88 0.00 168111 170195 complement fr 2 0.92 0.50 168111 170132 complement fr 2 0.93 0.10 168111 170108 complement fr 2 0.93 0.05 168111 170021 complement fr 2 0.93 0.07 170185 170349 complement fr 3 0.58 0.01 170469 171059 complement fr 2 0.69 0.00 170469 171029 complement fr 2 0.72 0.00 170469 170966 complement fr 2 0.80 0.00 170469 170921 complement fr 2 0.89 0.96 170469 170876 complement fr 2 0.91 0.03 170469 170852 complement fr 2 0.90 0.10 170469 170801 complement fr 2 0.89 0.21 171098 171328 complement fr 1 0.70 0.06 171098 171286 complement fr 1 0.63 0.00 171098 171253 complement fr 1 0.58 0.67 171445 172215 direct fr 1 0.85 0.69 171454 172215 direct fr 1 0.85 0.84 171715 172215 direct fr 1 0.84 0.00 171742 172215 direct fr 1 0.84 0.02 171802 172215 direct fr 1 0.82 0.30 172196 172972 direct fr 2 0.86 0.02 172238 172972 direct fr 2 0.91 0.88 172244 172972 direct fr 2 0.91 0.79 172289 172972 direct fr 2 0.91 0.26 173426 174058 direct fr 2 0.86 0.22 173432 174058 direct fr 2 0.86 0.13 173435 174058 direct fr 2 0.86 0.17 173483 174058 direct fr 2 0.90 0.82 173516 174058 direct fr 2 0.90 0.01 173567 174058 direct fr 2 0.89 0.70 173929 174507 direct fr 1 0.66 0.01 174070 174507 direct fr 1 0.86 0.93 174097 174507 direct fr 1 0.90 0.63 174127 174507 direct fr 1 0.89 0.06 174169 174507 direct fr 1 0.88 0.06 174911 176833 complement fr 1 0.76 0.79 174911 176779 complement fr 1 0.77 0.01 174911 176752 complement fr 1 0.76 0.02 174911 176677 complement fr 1 0.78 0.20 174911 176602 complement fr 1 0.79 0.16 176830 178113 complement fr 3 0.55 0.02 176830 177981 complement fr 3 0.55 0.07 176830 177900 complement fr 3 0.53 0.01 176830 177876 complement fr 3 0.53 0.14 176830 177846 complement fr 3 0.53 0.94 176830 177810 complement fr 3 0.52 0.11 177140 177259 complement fr 1 0.60 0.96 178103 178570 complement fr 1 0.74 0.00 178103 178507 complement fr 1 0.85 0.99 178103 178480 complement fr 1 0.85 0.21 178103 178438 complement fr 1 0.83 0.03 178477 179121 complement fr 3 0.87 0.05 178477 179085 complement fr 3 0.89 0.92 178477 179001 complement fr 3 0.88 0.05 178477 178920 complement fr 3 0.86 0.03 179698 180624 direct fr 1 0.77 0.40 179737 180624 direct fr 1 0.81 0.20 179746 180624 direct fr 1 0.81 0.47 179815 180624 direct fr 1 0.80 0.01 180639 181058 direct fr 3 0.66 0.06 180717 181058 direct fr 3 0.79 0.79 180888 181058 direct fr 3 0.77 0.70 180894 181058 direct fr 3 0.79 0.64 180921 181058 direct fr 3 0.75 0.21 181286 182029 direct fr 2 0.72 0.01 181313 182029 direct fr 2 0.75 0.03 181415 182029 direct fr 2 0.84 0.66 181466 182029 direct fr 2 0.83 0.17 181493 182029 direct fr 2 0.82 0.61 182058 182159 direct fr 3 0.56 0.55 182187 183221 direct fr 3 0.75 0.94 182193 183221 direct fr 3 0.75 0.79 182208 183221 direct fr 3 0.76 0.13 182214 183221 direct fr 3 0.77 0.08 182253 183221 direct fr 3 0.77 0.01 182274 183221 direct fr 3 0.77 0.04 182310 183221 direct fr 3 0.80 0.96 183404 184990 complement fr 1 0.74 0.01 183404 184972 complement fr 1 0.75 0.04 183404 184843 complement fr 1 0.76 0.00 183404 184711 complement fr 1 0.76 0.02 183404 184687 complement fr 1 0.75 0.06 185270 185422 complement fr 1 0.67 0.26 185270 185389 complement fr 1 0.71 0.61 185270 185347 complement fr 1 0.54 0.04 185460 185708 complement fr 2 0.61 0.61 185460 185675 complement fr 2 0.56 0.12 186031 187062 complement fr 3 0.90 0.11 186031 187008 complement fr 3 0.93 0.75 186031 187005 complement fr 3 0.93 0.75 186031 186981 complement fr 3 0.93 0.14 187250 188056 complement fr 1 0.75 0.62 187250 188005 complement fr 1 0.78 0.27 187250 187960 complement fr 1 0.81 0.01 187250 187903 complement fr 1 0.88 0.15 187250 187849 complement fr 1 0.87 0.47 188130 189092 complement fr 2 0.58 0.00 188130 188906 complement fr 2 0.71 0.03 188130 188831 complement fr 2 0.80 0.22 188130 188735 complement fr 2 0.81 0.17 188130 188723 complement fr 2 0.81 0.06 188130 188714 complement fr 2 0.81 0.02 188842 189858 complement fr 3 0.85 0.13 188842 189768 complement fr 3 0.88 0.08 188842 189729 complement fr 3 0.88 0.09 188842 189708 complement fr 3 0.87 0.11 189893 190684 complement fr 1 0.84 0.66 189893 190681 complement fr 1 0.84 0.62 189893 190660 complement fr 1 0.84 0.93 190681 191367 complement fr 3 0.90 0.72 190681 191268 complement fr 3 0.93 0.35 190681 191217 complement fr 3 0.93 0.22 190681 191142 complement fr 3 0.92 0.12 191390 193867 complement fr 1 0.87 0.01 191390 193837 complement fr 1 0.88 0.01 191390 193810 complement fr 1 0.89 0.04 191390 193717 complement fr 1 0.91 0.74 191390 193405 complement fr 1 0.91 0.03 191390 193351 complement fr 1 0.92 0.61 193992 194582 complement fr 2 0.85 0.03 193992 194516 complement fr 2 0.92 0.92 193992 194492 complement fr 2 0.92 0.06 193992 194441 complement fr 2 0.91 0.44 195367 196035 direct fr 1 0.64 0.01 195400 196035 direct fr 1 0.67 0.71 195403 196035 direct fr 1 0.67 0.63 195409 196035 direct fr 1 0.68 0.15 195493 196035 direct fr 1 0.69 0.57 195520 196035 direct fr 1 0.68 0.06 195631 196035 direct fr 1 0.78 0.14 195640 196035 direct fr 1 0.80 0.25 195667 196035 direct fr 1 0.83 0.61 196218 196964 direct fr 3 0.73 0.12 196260 196964 direct fr 3 0.76 0.02 196332 196964 direct fr 3 0.85 0.22 196338 196964 direct fr 3 0.86 0.13 196341 196964 direct fr 3 0.86 0.17 196389 196964 direct fr 3 0.91 0.82 196422 196964 direct fr 3 0.90 0.01 196473 196964 direct fr 3 0.89 0.70 196835 197413 direct fr 2 0.67 0.01 196976 197413 direct fr 2 0.89 0.93 197003 197413 direct fr 2 0.93 0.63 197033 197413 direct fr 2 0.92 0.06 197075 197413 direct fr 2 0.92 0.06 197728 198201 complement fr 3 0.74 0.10 197728 198078 complement fr 3 0.73 0.11 197728 198045 complement fr 3 0.70 0.00 197728 198021 complement fr 3 0.68 0.05 198104 198556 complement fr 1 0.56 0.90 198104 198499 complement fr 1 0.56 0.01 198104 198442 complement fr 1 0.51 0.84 198618 198767 complement fr 2 0.54 0.00 198944 200278 direct fr 2 0.85 0.00 199046 200278 direct fr 2 0.92 0.65 199112 200278 direct fr 2 0.92 0.10 199118 200278 direct fr 2 0.92 0.05 200554 201333 complement fr 3 0.95 0.93 200554 201156 complement fr 3 0.94 0.13 200554 201021 complement fr 3 0.93 0.16 201330 202418 complement fr 2 0.90 0.89 201330 202403 complement fr 2 0.92 0.09 201330 202397 complement fr 2 0.92 0.02 201330 202340 complement fr 2 0.93 0.60 202486 203067 complement fr 3 0.62 0.00 202486 203013 complement fr 3 0.69 0.01 202486 202953 complement fr 3 0.77 0.59 202486 202908 complement fr 3 0.83 0.11 202486 202902 complement fr 3 0.83 0.36 202486 202815 complement fr 3 0.80 0.22 203377 203661 complement fr 3 0.50 0.12 203916 204191 complement fr 2 0.61 0.18 203916 204083 complement fr 2 0.65 0.06 203916 204044 complement fr 2 0.56 0.04 203916 204032 complement fr 2 0.53 0.02 204705 205715 direct fr 3 0.89 0.07 204750 205715 direct fr 3 0.94 0.72 204765 205715 direct fr 3 0.94 0.97 204771 205715 direct fr 3 0.94 0.98 205747 206907 direct fr 1 0.77 0.08 205810 206907 direct fr 1 0.81 0.00 205924 206907 direct fr 1 0.84 0.84 206014 206907 direct fr 1 0.83 0.16 206904 208067 direct fr 3 0.86 0.84 207042 208067 direct fr 3 0.89 0.18 207051 208067 direct fr 3 0.89 0.04 207093 208067 direct fr 3 0.88 0.02 208909 210729 direct fr 1 0.80 0.00 209053 210729 direct fr 1 0.87 0.03 209131 210729 direct fr 1 0.90 0.02 209164 210729 direct fr 1 0.90 0.30 209197 210729 direct fr 1 0.91 0.04 210726 211517 direct fr 3 0.91 0.94 210846 211517 direct fr 3 0.91 0.00 210921 211517 direct fr 3 0.90 0.23 211029 211517 direct fr 3 0.89 0.25 211572 212471 direct fr 3 0.83 0.01 211581 212471 direct fr 3 0.84 0.01 211614 212471 direct fr 3 0.88 0.37 211992 212471 direct fr 3 0.86 0.26 212010 212471 direct fr 3 0.86 0.37 212019 212471 direct fr 3 0.85 0.15 212471 213646 direct fr 2 0.88 0.81 212510 213646 direct fr 2 0.91 0.43 212579 213646 direct fr 2 0.90 0.06 212609 213646 direct fr 2 0.90 0.01 214006 214971 direct fr 1 0.92 0.21 214123 214971 direct fr 1 0.94 0.15 214159 214971 direct fr 1 0.94 0.03 214186 214971 direct fr 1 0.93 0.00 215011 217386 direct fr 1 0.91 0.24 215077 217386 direct fr 1 0.92 0.65 215110 217386 direct fr 1 0.92 0.01 215227 217386 direct fr 1 0.92 0.01 217521 219191 direct fr 3 0.91 0.00 217557 219191 direct fr 3 0.93 0.44 217632 219191 direct fr 3 0.97 0.47 217671 219191 direct fr 3 0.97 0.06 217701 219191 direct fr 3 0.97 0.01 219208 220512 direct fr 1 0.87 0.02 219259 220512 direct fr 1 0.91 0.18 219388 220512 direct fr 1 0.96 0.19 219403 220512 direct fr 1 0.96 0.18 219439 220512 direct fr 1 0.96 0.02 220602 221003 direct fr 3 0.88 0.86 220605 221003 direct fr 3 0.88 0.81 220632 221003 direct fr 3 0.93 0.82 220635 221003 direct fr 3 0.93 0.73 220761 221003 direct fr 3 0.91 0.94 221063 221911 direct fr 2 0.88 0.76 221084 221911 direct fr 2 0.91 0.20 221102 221911 direct fr 2 0.93 0.01 221153 221911 direct fr 2 0.94 0.94 221222 221911 direct fr 2 0.93 0.44 221924 223111 direct fr 2 0.91 0.51 221939 223111 direct fr 2 0.92 0.57 222056 223111 direct fr 2 0.95 0.02 222071 223111 direct fr 2 0.95 0.01 222086 223111 direct fr 2 0.95 0.07 List of Regions of interest (regions from stop to stop codon w/ a signal in between) LEnd REnd Strand Frame -------- -------- ----------- ----- 18 1877 direct fr 3 1822 2067 complement fr 3 2008 3246 direct fr 1 3158 4240 direct fr 2 3218 4573 complement fr 1 4170 4853 direct fr 3 4851 6677 direct fr 3 6650 8542 direct fr 2 8110 9594 direct fr 1 9462 10415 complement fr 2 9652 10056 direct fr 1 9719 10186 complement fr 1 10187 10351 direct fr 2 10668 10910 direct fr 3 11061 11573 direct fr 3 11084 11824 complement fr 1 11189 11488 direct fr 2 11956 12411 direct fr 1 12683 13666 direct fr 2 12995 13729 complement fr 1 13416 14105 direct fr 3 13817 14419 direct fr 2 14176 16953 direct fr 1 16932 17735 direct fr 3 17738 18649 direct fr 2 18607 19143 direct fr 1 19023 20537 direct fr 3 20535 21314 direct fr 3 21263 21559 direct fr 2 21378 23216 direct fr 3 22829 23812 direct fr 2 23725 24414 direct fr 1 23979 25109 direct fr 3 25081 25629 direct fr 1 25205 25552 direct fr 2 25665 26015 direct fr 3 25987 27840 direct fr 1 26053 26889 complement fr 3 27595 27897 complement fr 3 27876 30059 direct fr 3 29972 31702 direct fr 2 31690 32925 direct fr 1 32994 34889 direct fr 3 35104 35403 direct fr 1 35401 35823 direct fr 1 35705 36340 direct fr 2 36094 37323 direct fr 1 37497 37946 complement fr 2 37613 38227 direct fr 2 37726 38412 complement fr 3 37746 37994 direct fr 3 38005 39630 direct fr 1 38243 38851 direct fr 2 38659 39258 complement fr 3 39707 40090 direct fr 2 40087 40866 complement fr 3 40867 42462 complement fr 3 42970 43626 direct fr 1 43511 43867 direct fr 2 43701 44081 direct fr 3 43880 44800 direct fr 2 44868 46307 direct fr 3 46883 47284 complement fr 1 47373 51059 complement fr 2 49839 51209 direct fr 3 50983 51435 complement fr 3 51225 53567 complement fr 2 53324 53908 complement fr 1 53860 55887 complement fr 3 55755 55949 direct fr 3 55761 58004 complement fr 2 56072 56455 complement fr 1 56154 56375 direct fr 3 56835 58040 direct fr 3 58018 58569 complement fr 3 58738 59175 direct fr 1 58959 59900 direct fr 3 59798 60334 direct fr 2 60532 61092 direct fr 1 61001 61162 direct fr 2 61090 61305 direct fr 1 61439 62017 complement fr 1 62049 64157 complement fr 2 64216 65211 complement fr 3 64225 65193 direct fr 1 65352 65801 direct fr 3 65683 66219 direct fr 1 66351 67670 complement fr 2 66672 67820 direct fr 3 67568 68785 complement fr 1 68783 70591 complement fr 1 70416 71087 complement fr 2 71351 72283 complement fr 1 72467 73879 complement fr 1 74091 75668 complement fr 2 74568 75656 direct fr 3 75666 76493 complement fr 2 76472 77350 complement fr 1 77326 78480 complement fr 3 78634 79932 direct fr 1 78910 80685 complement fr 3 80541 81209 complement fr 2 81579 82496 complement fr 2 82520 83182 direct fr 2 83372 84763 complement fr 1 84848 85297 complement fr 1 85907 87043 direct fr 2 86902 87819 direct fr 1 87767 88279 direct fr 2 87949 89331 direct fr 1 88261 88647 complement fr 3 89329 90063 direct fr 1 90113 90688 complement fr 1 90621 91670 direct fr 3 91838 92164 direct fr 2 92250 92498 complement fr 2 92614 93531 direct fr 1 93617 95008 direct fr 2 95192 97312 complement fr 1 95216 96202 direct fr 2 96200 97411 direct fr 2 97888 98808 direct fr 1 98771 99739 complement fr 1 99528 100322 complement fr 2 99986 100645 direct fr 2 100494 101558 direct fr 3 100681 101274 direct fr 1 101419 103632 direct fr 1 103609 104559 complement fr 3 104451 104963 direct fr 3 104753 105814 direct fr 2 104897 105739 complement fr 1 105812 107101 direct fr 2 106801 108042 direct fr 1 107892 109037 direct fr 3 109152 109397 direct fr 3 109705 114192 direct fr 1 112993 113373 complement fr 3 113623 114156 complement fr 3 114280 115671 complement fr 3 115685 116551 direct fr 2 116018 116524 complement fr 1 116796 117299 direct fr 3 117605 122524 direct fr 2 122665 123087 complement fr 3 123097 124809 complement fr 3 125173 126177 direct fr 1 125943 127148 direct fr 3 126111 127250 complement fr 2 127087 127383 direct fr 1 127402 129114 direct fr 1 129162 130037 direct fr 3 129992 131137 complement fr 1 130987 132228 complement fr 3 131928 133217 complement fr 2 133215 134156 complement fr 2 134092 134466 complement fr 3 134309 134536 direct fr 2 135132 135545 complement fr 2 135600 135827 direct fr 3 135751 136194 complement fr 3 135761 135955 complement fr 1 136100 137236 direct fr 2 137095 138012 direct fr 1 138082 138618 complement fr 3 138306 138518 complement fr 2 138497 139030 direct fr 2 138703 140319 direct fr 1 140446 141840 complement fr 3 141489 142262 complement fr 2 142253 142576 complement fr 1 143337 144701 complement fr 2 143376 143876 direct fr 3 144202 144708 direct fr 1 144341 144769 complement fr 1 144805 145767 complement fr 3 145599 147134 complement fr 2 147210 147500 complement fr 2 147947 148513 complement fr 1 148511 148723 complement fr 1 148832 149773 complement fr 1 149436 150527 complement fr 2 150085 150792 complement fr 3 150858 151091 direct fr 3 150884 151540 direct fr 2 151473 152903 direct fr 3 152901 153344 direct fr 3 153390 153845 direct fr 3 153974 154363 direct fr 2 154330 154722 direct fr 1 154739 156367 direct fr 2 156407 157543 direct fr 2 157402 158319 direct fr 1 158448 158897 complement fr 2 158460 158828 direct fr 3 158954 160201 complement fr 1 159083 160126 direct fr 2 160557 161696 direct fr 3 160560 161678 complement fr 2 161653 163026 complement fr 3 163446 164624 direct fr 3 164850 165281 complement fr 2 165260 166201 complement fr 1 165976 166419 direct fr 1 166081 166374 complement fr 3 166422 166889 direct fr 3 166618 167292 complement fr 3 166774 167124 direct fr 1 167184 168134 direct fr 3 168111 170324 complement fr 2 170185 171249 complement fr 3 170469 171062 complement fr 2 171098 171757 complement fr 1 171421 172215 direct fr 1 172004 172972 direct fr 2 172935 173243 complement fr 2 173084 173356 direct fr 2 173354 174058 direct fr 2 173767 174507 direct fr 1 173872 174216 complement fr 3 174483 174812 direct fr 3 174505 174654 direct fr 1 174911 176848 complement fr 1 176830 178245 complement fr 3 177140 177385 complement fr 1 178103 178606 complement fr 1 178477 179169 complement fr 3 179683 180624 direct fr 1 180399 181058 direct fr 3 181256 182029 direct fr 2 181881 182159 direct fr 3 181992 182237 complement fr 2 182157 183221 direct fr 3 183236 183958 direct fr 2 183404 185005 complement fr 1 185119 185328 complement fr 3 185270 185455 complement fr 1 185460 185858 complement fr 2 186031 187140 complement fr 3 187250 188074 complement fr 1 187832 188161 direct fr 2 188130 189119 complement fr 2 188842 189975 complement fr 3 189893 190738 complement fr 1 190681 191445 complement fr 3 191390 193891 complement fr 1 193992 194585 complement fr 2 195340 196035 direct fr 1 196107 196964 direct fr 3 196673 197413 direct fr 2 196778 197122 complement fr 1 197389 197718 direct fr 1 197411 197560 direct fr 2 197728 198219 complement fr 3 198104 198571 complement fr 1 198618 198896 complement fr 2 198935 200278 direct fr 2 200554 201471 complement fr 3 201330 202466 complement fr 2 202486 203220 complement fr 3 203377 204027 complement fr 3 203435 203971 direct fr 2 203916 204356 complement fr 2 204678 205715 direct fr 3 205723 206907 direct fr 1 206850 208067 direct fr 3 207833 208507 direct fr 2 207923 208795 complement fr 1 208903 210729 direct fr 1 210594 211517 direct fr 3 211515 212471 direct fr 3 212414 213646 direct fr 2 213949 214971 direct fr 1 214969 217386 direct fr 1 217488 219191 direct fr 3 219175 220512 direct fr 1 220302 221003 direct fr 3 221033 221911 direct fr 2 221909 223111 direct fr 2 POSSIBLE SEQUENCE FRAMESHIFTS DETECTED From To Frame Frame At base... ----- ----- ---------- 1 2 25368 +/- 11 bp (direct) 2 1 38496 +/- 11 bp (direct) 3 1 135900 +/- 11 bp (complement) 3 1 166776 +/- 11 bp (direct) 3 1 177276 +/- 11 bp (complement) 1 3 198216 +/- 11 bp (complement) -------------------- ABOUT THE MATRIX USED: Training set derived by GeneMarkS, 4.6a Fri Apr 20 13:55:31 2007