GENEMARK PREDICTIONS Sequence: gi|116662232|ref|NC_008538.1| Arthrobacter sp. FB24 plasmid 2, complete sequence Sequence file: NC_008538.fna Sequence length: 115507 GC Content: 63.32% Window length: 96 Window step: 12 Threshold value: 0.500 --- Matrix: - Matrix author: - Matrix order: 2 List of Open reading frames predicted as CDSs, shown with alternate starts (regions from start to stop codon w/ coding function >0.50) Left Right DNA Coding Avg Start end end Strand Frame Prob Prob -------- -------- ---------- ----- ---- ---- 68 973 direct fr 2 0.68 .... 71 973 direct fr 2 0.68 .... 155 973 direct fr 2 0.67 0.00 239 973 direct fr 2 0.64 0.16 242 973 direct fr 2 0.64 0.18 1276 1926 complement fr 3 0.52 0.11 1276 1869 complement fr 3 0.57 0.02 1276 1818 complement fr 3 0.60 0.85 1276 1734 complement fr 3 0.55 0.00 1276 1731 complement fr 3 0.55 0.00 4403 4825 complement fr 1 0.75 0.89 4403 4666 complement fr 1 0.64 0.00 4403 4654 complement fr 1 0.62 0.01 4818 6593 complement fr 2 0.95 0.26 4818 6560 complement fr 2 0.95 0.99 4818 6518 complement fr 2 0.95 0.00 4818 6515 complement fr 2 0.95 0.01 6788 7879 direct fr 2 0.72 0.22 6797 7879 direct fr 2 0.73 0.06 6821 7879 direct fr 2 0.75 0.37 6842 7879 direct fr 2 0.75 0.83 6896 7879 direct fr 2 0.75 0.00 6968 7879 direct fr 2 0.74 0.32 7046 7879 direct fr 2 0.73 0.45 7884 8234 direct fr 3 0.50 0.89 7941 8234 direct fr 3 0.52 0.19 7950 8234 direct fr 3 0.50 0.44 8082 8234 direct fr 3 0.52 0.10 8246 10021 direct fr 2 0.74 0.00 8291 10021 direct fr 2 0.75 0.01 8339 10021 direct fr 2 0.78 0.63 8432 10021 direct fr 2 0.80 0.00 8642 10021 direct fr 2 0.92 0.90 8717 10021 direct fr 2 0.92 0.00 8816 10021 direct fr 2 0.94 0.26 10081 11703 complement fr 3 0.93 0.96 10081 11700 complement fr 3 0.94 0.92 10081 11511 complement fr 3 0.95 0.12 10081 11481 complement fr 3 0.95 0.12 10081 11418 complement fr 3 0.95 0.11 11700 13220 complement fr 2 0.87 0.81 11700 13211 complement fr 2 0.87 0.96 11700 13025 complement fr 2 0.89 0.33 11700 13004 complement fr 2 0.89 0.06 11700 12710 complement fr 2 0.89 0.45 13213 14535 complement fr 3 0.64 0.00 13213 14520 complement fr 3 0.65 0.00 13213 14430 complement fr 3 0.68 0.01 13213 14370 complement fr 3 0.70 0.08 13213 14364 complement fr 3 0.71 0.02 13213 14310 complement fr 3 0.74 0.68 13213 14262 complement fr 3 0.73 0.14 15255 15542 complement fr 2 0.66 0.72 15255 15524 complement fr 2 0.72 0.42 15255 15371 complement fr 2 0.75 0.01 15255 15368 complement fr 2 0.75 0.01 15556 15882 complement fr 3 0.58 0.07 15556 15774 complement fr 3 0.77 0.80 15556 15768 complement fr 3 0.76 0.77 15556 15702 complement fr 3 0.69 0.02 16299 16589 direct fr 3 0.66 0.80 16317 16589 direct fr 3 0.68 0.96 16338 16589 direct fr 3 0.74 0.45 16458 16589 direct fr 3 0.59 0.05 16626 17708 direct fr 3 0.90 0.32 16638 17708 direct fr 3 0.91 0.92 16896 17708 direct fr 3 0.94 0.04 16905 17708 direct fr 3 0.94 0.02 17016 17708 direct fr 3 0.94 0.02 17705 18220 direct fr 2 0.71 0.80 17741 18220 direct fr 2 0.73 0.00 17933 18220 direct fr 2 0.85 0.01 18227 19714 direct fr 2 0.83 0.93 18230 19714 direct fr 2 0.84 0.93 18647 19714 direct fr 2 0.88 0.54 18746 19714 direct fr 2 0.93 0.27 18803 19714 direct fr 2 0.94 0.33 18860 19714 direct fr 2 0.95 0.55 18908 19714 direct fr 2 0.95 0.01 20132 22039 direct fr 2 0.56 0.00 20174 22039 direct fr 2 0.57 0.07 20213 22039 direct fr 2 0.58 0.00 20381 22039 direct fr 2 0.64 0.79 20384 22039 direct fr 2 0.64 0.53 20387 22039 direct fr 2 0.64 0.40 20456 22039 direct fr 2 0.65 0.00 20459 22039 direct fr 2 0.65 0.00 20480 22039 direct fr 2 0.64 0.00 22253 25168 complement fr 1 0.90 0.67 22253 25114 complement fr 1 0.90 0.09 22253 25009 complement fr 1 0.90 0.12 25295 25867 complement fr 1 0.85 0.31 25295 25612 complement fr 1 0.86 0.03 25295 25558 complement fr 1 0.82 0.00 25295 25510 complement fr 1 0.79 0.02 26368 26922 direct fr 1 0.50 0.65 26374 26922 direct fr 1 0.50 0.52 27071 27712 direct fr 2 0.72 0.99 27182 27712 direct fr 2 0.73 0.01 27269 27712 direct fr 2 0.85 0.48 27281 27712 direct fr 2 0.85 0.03 27284 27712 direct fr 2 0.85 0.06 27795 28685 direct fr 3 0.89 0.07 27972 28685 direct fr 3 0.91 0.67 27993 28685 direct fr 3 0.90 0.37 28071 28685 direct fr 3 0.89 0.00 29677 30069 complement fr 3 0.76 0.97 29677 29940 complement fr 3 0.72 0.00 30175 31605 direct fr 1 0.89 0.78 30268 31605 direct fr 1 0.92 0.12 30271 31605 direct fr 1 0.92 0.04 30304 31605 direct fr 1 0.94 0.32 30319 31605 direct fr 1 0.94 0.74 30361 31605 direct fr 1 0.96 0.11 30391 31605 direct fr 1 0.96 0.15 30394 31605 direct fr 1 0.96 0.21 31651 33351 direct fr 1 0.83 0.01 31684 33351 direct fr 1 0.85 0.09 31723 33351 direct fr 1 0.87 0.01 31852 33351 direct fr 1 0.94 0.16 31870 33351 direct fr 1 0.95 0.12 31900 33351 direct fr 1 0.97 0.80 31996 33351 direct fr 1 0.97 0.01 32059 33351 direct fr 1 0.97 0.03 33440 33973 direct fr 2 0.60 0.77 33467 33973 direct fr 2 0.63 0.40 33812 33973 direct fr 2 0.62 0.17 34106 35101 direct fr 2 0.86 0.04 34115 35101 direct fr 2 0.86 0.24 34142 35101 direct fr 2 0.89 0.33 34220 35101 direct fr 2 0.92 0.54 34340 35101 direct fr 2 0.91 0.20 35169 36602 complement fr 2 0.92 0.00 35169 36536 complement fr 2 0.97 0.99 35169 36461 complement fr 2 0.97 0.05 35169 36455 complement fr 2 0.97 0.01 36798 37679 complement fr 2 0.87 0.19 36798 37496 complement fr 2 0.88 0.63 36798 37493 complement fr 2 0.88 0.65 36798 37448 complement fr 2 0.87 0.02 37796 38896 complement fr 1 0.93 0.93 37796 38875 complement fr 1 0.93 0.15 37796 38851 complement fr 1 0.93 0.04 38896 40548 complement fr 3 0.92 0.26 38896 40449 complement fr 3 0.94 0.25 38896 40413 complement fr 3 0.95 0.08 38896 40404 complement fr 3 0.95 0.05 38896 40362 complement fr 3 0.95 0.74 38896 40359 complement fr 3 0.95 0.84 40773 41384 direct fr 3 0.80 0.49 40836 41384 direct fr 3 0.85 0.06 40935 41384 direct fr 3 0.88 0.14 40971 41384 direct fr 3 0.87 0.18 41649 42719 direct fr 3 0.86 0.20 41673 42719 direct fr 3 0.88 0.89 41715 42719 direct fr 3 0.90 0.04 41772 42719 direct fr 3 0.90 0.72 41787 42719 direct fr 3 0.89 0.28 42838 43212 direct fr 1 0.73 0.24 43009 43212 direct fr 1 0.87 0.07 43063 43212 direct fr 1 0.88 0.77 43144 43212 direct fr 1 0.74 0.05 43152 45161 direct fr 3 0.92 0.00 43209 45161 direct fr 3 0.95 0.08 43287 45161 direct fr 3 0.98 0.17 43332 45161 direct fr 3 0.98 0.08 43476 45161 direct fr 3 0.98 0.01 45158 45667 direct fr 2 0.77 0.02 45392 45667 direct fr 2 0.76 0.14 45455 45667 direct fr 2 0.72 0.01 45542 45667 direct fr 2 0.67 0.29 45664 46413 direct fr 1 0.93 0.67 45694 46413 direct fr 1 0.96 0.82 45721 46413 direct fr 1 0.97 0.03 45937 46413 direct fr 1 0.96 0.11 45952 46413 direct fr 1 0.96 0.17 46469 47068 direct fr 2 0.90 0.98 46499 47068 direct fr 2 0.93 0.96 46691 47068 direct fr 2 0.89 0.06 46859 47068 direct fr 2 0.82 0.00 47117 48481 direct fr 2 0.87 0.05 47210 48481 direct fr 2 0.91 0.16 47216 48481 direct fr 2 0.91 0.06 47219 48481 direct fr 2 0.91 0.03 48758 48898 direct fr 2 0.65 0.55 48800 48898 direct fr 2 0.56 0.31 48918 49847 complement fr 2 0.77 0.60 48918 49706 complement fr 2 0.76 0.67 48918 49673 complement fr 2 0.77 0.00 48918 49532 complement fr 2 0.81 0.42 48918 49505 complement fr 2 0.80 0.10 52970 53995 complement fr 1 0.80 0.84 52970 53947 complement fr 1 0.82 0.01 52970 53941 complement fr 1 0.82 0.08 52970 53740 complement fr 1 0.80 0.03 52970 53722 complement fr 1 0.79 0.02 52970 53704 complement fr 1 0.79 0.01 54057 54737 complement fr 2 0.76 0.93 54057 54710 complement fr 2 0.78 0.63 54057 54542 complement fr 2 0.81 0.87 54057 54386 complement fr 2 0.82 0.13 54057 54347 complement fr 2 0.79 0.19 55066 55671 direct fr 1 0.72 0.08 55078 55671 direct fr 1 0.73 0.13 55168 55671 direct fr 1 0.72 0.25 55252 55671 direct fr 1 0.70 0.69 55396 55671 direct fr 1 0.61 0.07 57819 63239 complement fr 2 0.75 0.04 57819 63233 complement fr 2 0.75 0.01 57819 63218 complement fr 2 0.76 0.01 57819 63176 complement fr 2 0.76 0.24 57819 62714 complement fr 2 0.83 0.05 57819 62678 complement fr 2 0.84 0.29 57819 62660 complement fr 2 0.84 0.69 57819 62519 complement fr 2 0.84 0.05 57819 62480 complement fr 2 0.84 0.72 57819 62258 complement fr 2 0.84 0.05 62706 63428 direct fr 3 0.89 0.20 62724 63428 direct fr 3 0.91 0.45 62739 63428 direct fr 3 0.93 0.90 62742 63428 direct fr 3 0.93 0.89 62877 63428 direct fr 3 0.93 0.00 65103 65222 complement fr 2 0.52 0.38 65271 65597 complement fr 2 0.62 0.01 65271 65564 complement fr 2 0.69 0.79 67156 67587 direct fr 1 0.93 0.99 67180 67587 direct fr 1 0.94 0.69 67216 67587 direct fr 1 0.94 0.02 67665 68015 direct fr 3 0.75 1.00 67764 68015 direct fr 3 0.81 0.11 67869 68015 direct fr 3 0.68 0.12 67920 68015 direct fr 3 0.55 0.40 68046 68207 complement fr 2 0.52 0.82 68604 69617 direct fr 3 0.96 0.99 68703 69617 direct fr 3 0.96 0.13 68736 69617 direct fr 3 0.96 0.00 69816 69968 direct fr 3 0.55 0.84 69834 69968 direct fr 3 0.63 0.87 70484 71839 direct fr 2 0.92 0.91 70508 71839 direct fr 2 0.93 0.96 70601 71839 direct fr 2 0.93 0.08 70604 71839 direct fr 2 0.93 0.13 72254 72562 complement fr 1 0.66 0.92 72254 72481 complement fr 1 0.65 0.00 72572 72781 complement fr 1 0.55 0.78 73141 73647 direct fr 1 0.64 0.03 73201 73647 direct fr 1 0.73 0.04 73255 73647 direct fr 1 0.81 0.18 73330 73647 direct fr 1 0.84 0.01 73342 73647 direct fr 1 0.83 0.08 73372 73647 direct fr 1 0.81 0.40 73647 75206 direct fr 3 0.77 0.99 73677 75206 direct fr 3 0.77 0.02 73764 75206 direct fr 3 0.76 0.37 73851 75206 direct fr 3 0.74 0.01 75224 76012 direct fr 2 0.70 0.52 75263 76012 direct fr 2 0.74 0.41 75431 76012 direct fr 2 0.78 0.37 75539 76012 direct fr 2 0.74 0.06 75554 76012 direct fr 2 0.73 0.27 76144 77301 direct fr 1 0.59 0.24 76453 77301 direct fr 1 0.53 0.01 76513 77301 direct fr 1 0.50 0.33 77409 78017 complement fr 2 0.70 0.82 77409 78002 complement fr 2 0.71 0.46 77409 77963 complement fr 2 0.72 0.08 77409 77939 complement fr 2 0.72 0.19 77409 77915 complement fr 2 0.72 0.29 77409 77900 complement fr 2 0.73 0.12 77409 77828 complement fr 2 0.80 0.06 77409 77648 complement fr 2 0.75 0.35 78305 78445 direct fr 2 0.56 0.59 78326 78445 direct fr 2 0.59 0.30 78356 78445 direct fr 2 0.54 0.46 78462 79979 complement fr 2 0.68 0.82 78462 79028 complement fr 2 0.54 0.01 78462 79022 complement fr 2 0.54 0.02 79969 80307 complement fr 3 0.77 0.98 79969 80304 complement fr 3 0.80 0.98 79969 80262 complement fr 3 0.82 0.08 80301 81419 complement fr 2 0.91 0.29 80301 81407 complement fr 2 0.92 0.33 80301 81383 complement fr 2 0.93 0.58 80301 81326 complement fr 2 0.93 0.28 80301 81230 complement fr 2 0.92 0.04 81873 83306 direct fr 3 0.61 0.12 81912 83306 direct fr 3 0.62 0.00 82041 83306 direct fr 3 0.69 0.00 82080 83306 direct fr 3 0.71 0.02 82182 83306 direct fr 3 0.74 0.21 82197 83306 direct fr 3 0.74 0.28 82212 83306 direct fr 3 0.74 0.15 83278 84018 direct fr 1 0.79 0.01 83314 84018 direct fr 1 0.83 0.63 83395 84018 direct fr 1 0.86 0.05 83410 84018 direct fr 1 0.86 0.01 83467 84018 direct fr 1 0.90 0.76 83539 84018 direct fr 1 0.94 0.03 84129 85589 direct fr 3 0.71 0.00 84162 85589 direct fr 3 0.73 0.00 84330 85589 direct fr 3 0.83 0.52 84336 85589 direct fr 3 0.83 0.31 84561 85589 direct fr 3 0.86 0.10 84603 85589 direct fr 3 0.85 0.16 84639 85589 direct fr 3 0.85 0.12 85637 87154 direct fr 2 0.86 0.00 85805 87154 direct fr 2 0.92 0.18 85889 87154 direct fr 2 0.92 0.17 85922 87154 direct fr 2 0.92 0.08 87154 87693 direct fr 1 0.87 0.88 87313 87693 direct fr 1 0.88 0.01 87412 87693 direct fr 1 0.83 0.42 87415 87693 direct fr 1 0.83 0.35 87806 88192 direct fr 2 0.76 0.07 87881 88192 direct fr 2 0.86 0.24 87968 88192 direct fr 2 0.81 0.03 88058 88192 direct fr 2 0.74 0.15 88617 89336 complement fr 2 0.74 0.26 88617 89087 complement fr 2 0.83 0.37 88617 89054 complement fr 2 0.84 0.29 88617 88967 complement fr 2 0.81 0.07 89043 89270 direct fr 3 0.50 0.36 89049 89270 direct fr 3 0.50 0.49 89094 89270 direct fr 3 0.55 0.38 89336 90238 complement fr 1 0.77 0.04 89336 90229 complement fr 1 0.77 0.08 89336 90214 complement fr 1 0.79 0.57 89336 90190 complement fr 1 0.80 0.88 89336 90100 complement fr 1 0.81 0.21 89336 90079 complement fr 1 0.82 0.05 89336 90013 complement fr 1 0.86 0.67 90490 92001 direct fr 1 0.92 0.96 90535 92001 direct fr 1 0.92 0.14 90547 92001 direct fr 1 0.92 0.17 90565 92001 direct fr 1 0.92 0.02 91998 92549 direct fr 3 0.91 0.99 92010 92549 direct fr 3 0.93 0.96 92061 92549 direct fr 3 0.98 0.14 92091 92549 direct fr 3 0.98 0.34 92103 92549 direct fr 3 0.98 0.03 92635 93660 direct fr 1 0.96 0.96 92821 93660 direct fr 1 0.95 0.03 92914 93660 direct fr 1 0.94 0.03 93721 94341 complement fr 3 0.51 0.07 93721 94254 complement fr 3 0.55 0.88 93721 94251 complement fr 3 0.55 0.74 93721 94221 complement fr 3 0.54 0.56 94857 95912 direct fr 3 0.58 0.05 94893 95912 direct fr 3 0.60 0.00 94908 95912 direct fr 3 0.61 0.07 94923 95912 direct fr 3 0.63 0.46 95250 95912 direct fr 3 0.78 0.15 95355 95912 direct fr 3 0.79 0.02 95562 95912 direct fr 3 0.89 0.76 95685 95912 direct fr 3 0.84 0.31 95757 95912 direct fr 3 0.76 0.01 95909 96736 direct fr 2 0.73 0.18 95975 96736 direct fr 2 0.77 0.39 96098 96736 direct fr 2 0.79 0.75 96155 96736 direct fr 2 0.78 0.37 96733 97533 direct fr 1 0.71 0.82 96760 97533 direct fr 1 0.72 0.11 96784 97533 direct fr 1 0.73 0.01 96823 97533 direct fr 1 0.74 0.82 96865 97533 direct fr 1 0.74 0.04 96883 97533 direct fr 1 0.74 0.08 97440 98330 direct fr 3 0.67 0.00 97530 98330 direct fr 3 0.75 0.01 97614 98330 direct fr 3 0.84 0.38 97629 98330 direct fr 3 0.85 0.04 97635 98330 direct fr 3 0.86 0.46 97644 98330 direct fr 3 0.86 0.44 97773 98330 direct fr 3 0.87 0.01 97932 98330 direct fr 3 0.92 0.39 97938 98330 direct fr 3 0.93 0.67 98400 99056 direct fr 3 0.63 0.00 98505 99056 direct fr 3 0.73 0.03 98514 99056 direct fr 3 0.74 0.02 98724 99056 direct fr 3 0.87 0.59 98763 99056 direct fr 3 0.86 0.09 98772 99056 direct fr 3 0.86 0.02 99119 100375 direct fr 2 0.54 0.25 99146 100375 direct fr 2 0.56 0.59 99224 100375 direct fr 2 0.54 0.04 99227 100375 direct fr 2 0.54 0.09 100365 101228 direct fr 3 0.63 0.13 100464 101228 direct fr 3 0.68 0.67 100491 101228 direct fr 3 0.67 0.24 100650 101228 direct fr 3 0.58 0.52 101547 102791 direct fr 3 0.90 0.10 101670 102791 direct fr 3 0.94 0.44 101718 102791 direct fr 3 0.94 0.05 101727 102791 direct fr 3 0.94 0.02 102916 104406 direct fr 1 0.86 0.01 102943 104406 direct fr 1 0.88 0.77 102973 104406 direct fr 1 0.90 0.90 102985 104406 direct fr 1 0.90 0.54 103084 104406 direct fr 1 0.89 0.27 104247 105008 direct fr 3 0.56 0.01 104409 105008 direct fr 3 0.71 0.87 104592 105008 direct fr 3 0.73 0.00 104613 105008 direct fr 3 0.72 0.01 104625 105008 direct fr 3 0.71 0.03 105005 105343 direct fr 2 0.59 0.95 105598 106788 direct fr 1 0.77 0.78 106057 106788 direct fr 1 0.84 0.16 106087 106788 direct fr 1 0.84 0.30 106150 106788 direct fr 1 0.84 0.72 106695 107534 direct fr 3 0.58 0.00 106788 107534 direct fr 3 0.64 0.01 106854 107534 direct fr 3 0.70 0.85 106992 107534 direct fr 3 0.78 0.10 107217 107534 direct fr 3 0.72 0.02 107223 107534 direct fr 3 0.71 0.12 108811 109509 complement fr 3 0.58 0.97 108811 109491 complement fr 3 0.59 0.77 108811 109404 complement fr 3 0.56 0.25 108811 109386 complement fr 3 0.55 0.60 108811 109359 complement fr 3 0.56 0.22 109506 110480 complement fr 2 0.76 0.02 109506 110450 complement fr 2 0.78 0.13 109506 110396 complement fr 2 0.79 0.78 109506 110363 complement fr 2 0.78 0.02 109506 110300 complement fr 2 0.77 0.24 109506 110258 complement fr 2 0.78 0.17 110477 111430 complement fr 1 0.90 0.80 110477 111412 complement fr 1 0.90 0.14 110477 111379 complement fr 1 0.90 0.05 111456 112757 complement fr 2 0.91 0.66 111456 112664 complement fr 2 0.91 0.15 111456 112655 complement fr 2 0.91 0.14 112759 113697 complement fr 3 0.73 0.81 112759 113694 complement fr 3 0.73 0.83 112759 113574 complement fr 3 0.73 0.58 112759 113355 complement fr 3 0.82 0.18 112759 113292 complement fr 3 0.85 0.79 112759 113271 complement fr 3 0.85 0.43 112759 113244 complement fr 3 0.83 0.01 113697 114389 complement fr 2 0.84 0.99 113697 114284 complement fr 2 0.84 0.16 113697 114212 complement fr 2 0.84 0.38 113697 114206 complement fr 2 0.84 0.64 114401 115477 complement fr 1 0.89 .... 114401 115447 complement fr 1 0.90 .... 114401 115429 complement fr 1 0.91 .... 114401 115258 complement fr 1 0.92 0.01 114401 115207 complement fr 1 0.91 0.35 114401 115180 complement fr 1 0.91 0.25 List of Regions of interest (regions from stop to stop codon w/ a signal in between) LEnd REnd Strand Frame -------- -------- ----------- ----- 29 973 direct fr 2 485 970 complement fr 1 1276 1932 complement fr 3 2355 4160 complement fr 2 4403 4939 complement fr 1 4818 6635 complement fr 2 6593 10096 complement fr 1 6773 7879 direct fr 2 7671 8234 direct fr 3 8168 10021 direct fr 2 10081 11712 complement fr 3 11700 13241 complement fr 2 13213 14538 complement fr 3 14520 15257 complement fr 2 14812 15258 direct fr 1 15255 15587 complement fr 2 15556 16272 complement fr 3 16257 16589 direct fr 3 16614 17708 direct fr 3 17570 18220 direct fr 2 18218 19714 direct fr 2 19712 20032 direct fr 2 20030 22039 direct fr 2 22253 25240 complement fr 1 25295 25882 complement fr 1 26244 26792 complement fr 2 26272 26922 direct fr 1 26875 27969 complement fr 3 27035 27712 direct fr 2 27687 28685 direct fr 3 28582 29283 complement fr 3 28708 29208 direct fr 1 28737 29444 direct fr 3 29677 30087 complement fr 3 30151 31605 direct fr 1 31624 33351 direct fr 1 33212 33973 direct fr 2 33365 33937 complement fr 1 33971 35101 direct fr 2 35169 36605 complement fr 2 36798 37691 complement fr 2 37796 39214 complement fr 1 38896 40572 complement fr 3 40704 41384 direct fr 3 41183 41767 direct fr 2 41604 42719 direct fr 3 42790 43212 direct fr 1 42960 45161 direct fr 3 45047 45667 direct fr 2 45643 46413 direct fr 1 46451 47068 direct fr 2 47075 48481 direct fr 2 48431 48784 complement fr 1 48530 48898 direct fr 2 48918 49931 complement fr 2 50549 51220 direct fr 2 50660 50989 complement fr 1 51157 51540 direct fr 1 51902 52870 complement fr 1 52970 54187 complement fr 1 53363 53680 direct fr 2 54057 54758 complement fr 2 54961 55671 direct fr 1 56092 56565 direct fr 1 57022 57573 direct fr 1 57819 63431 complement fr 2 60993 62513 direct fr 3 62511 63428 direct fr 3 63518 64855 complement fr 1 64900 65511 complement fr 3 65103 65273 complement fr 2 65271 65624 complement fr 2 65543 65923 direct fr 2 65578 65922 complement fr 3 66026 66394 complement fr 1 66270 66578 complement fr 2 66922 67587 direct fr 1 67659 68015 direct fr 3 68046 68243 complement fr 2 68376 69617 direct fr 3 69774 69968 direct fr 3 70253 71839 direct fr 2 72254 72574 complement fr 1 72572 73009 complement fr 1 73114 73647 direct fr 1 73608 75206 direct fr 3 74166 74639 complement fr 2 75197 76012 direct fr 2 76069 77301 direct fr 1 77409 78053 complement fr 2 78206 78445 direct fr 2 78462 80021 complement fr 2 79617 79772 direct fr 3 79969 80454 complement fr 3 80301 81539 complement fr 2 81798 83306 direct fr 3 82149 83117 complement fr 2 83233 84018 direct fr 1 83236 83703 complement fr 3 84111 85589 direct fr 3 84130 84333 direct fr 1 84414 84977 complement fr 2 85625 87154 direct fr 2 87085 87693 direct fr 1 87743 88192 direct fr 2 88113 88613 direct fr 3 88617 89552 complement fr 2 88998 89270 direct fr 3 89336 90244 complement fr 1 90436 92001 direct fr 1 91965 92549 direct fr 3 92410 93660 direct fr 1 93605 93898 direct fr 2 93721 94413 complement fr 3 93733 94578 direct fr 1 94848 95912 direct fr 3 95843 96736 direct fr 2 96694 97533 direct fr 1 97059 98330 direct fr 3 98367 99056 direct fr 3 98987 100375 direct fr 2 99416 100153 complement fr 1 100239 101228 direct fr 3 101538 102791 direct fr 3 102877 104406 direct fr 1 104232 105008 direct fr 3 104876 105343 direct fr 2 105304 105555 direct fr 1 105553 106788 direct fr 1 105616 106749 complement fr 3 106536 107534 direct fr 3 106629 107081 complement fr 2 107453 108382 direct fr 2 108386 108640 complement fr 1 108548 109873 direct fr 2 108553 109437 direct fr 1 108811 109530 complement fr 3 109506 110495 complement fr 2 110477 111532 complement fr 1 111456 112943 complement fr 2 112684 113751 direct fr 1 112759 113805 complement fr 3 113697 114431 complement fr 2 114401 115489 complement fr 1 POSSIBLE SEQUENCE FRAMESHIFTS DETECTED From To Frame Frame At base... ----- ----- ---------- 2 3 41640 +/- 11 bp (direct) -------------------- ABOUT THE MATRIX USED: Training set derived by GeneMarkS, 4.6a Fri Apr 20 13:48:21 2007