LOCUS NC_009474 4909 bp DNA circular BCT 24-MAY-2007 DEFINITION Acidiphilium cryptum JF-5 plasmid pACRY08, complete sequence. ACCESSION NC_009474 VERSION NC_009474.1 GI:148244133 KEYWORDS . SOURCE Acidiphilium cryptum JF-5 ORGANISM Acidiphilium cryptum JF-5 Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium. REFERENCE 1 (bases 1 to 4909) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Magnuson,T. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of plasmid8 pACRY08 of Acidiphilium cryptum JF-5 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4909) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (23-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4909) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Magnuson,T. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (04-MAY-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000696. URL -- http://www.jgi.doe.gov JGI Project ID: 4000181 Source DNA and bacteria available from Timothy Magnuson (magntimo@isu.edu) Contacts: Timothy Magnuson (magntimo@isu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..4909 /organism="Acidiphilium cryptum JF-5" /mol_type="genomic DNA" /strain="JF-5" /db_xref="taxon:349163" /plasmid="pACRY08" gene 1120..1605 /locus_tag="Acry_3633" /db_xref="GeneID:5159440" CDS 1120..1605 /locus_tag="Acry_3633" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001220367.1" /db_xref="GI:148244134" /db_xref="GeneID:5159440" /translation="MWGMLASMSKHSMASLRERRAALGLVQMNLWIREEDRAAFTAAV APFKQRAGELDPAQRPGRKRQEFARASSRPVARQKPPEAPQRPAERRSAPRPAIALPC RLIFPTRPPARLRNAMKEDGWFYDKLTGTWTADEAEPVELWIDELVRDWGGRIIAPAG G" gene 1770..2378 /locus_tag="Acry_3634" /db_xref="GeneID:5159443" CDS 1770..2378 /locus_tag="Acry_3634" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001220368.1" /db_xref="GI:148244135" /db_xref="GeneID:5159443" /translation="MRRCGAHSMDCAITLVAGRFSASRETMNEIDPKRQERNKRYRTG LEERGIKAFQVVAPETAKGLFRRAAELMTRDNDPMEPRQAMRLVGGANEPELGDSAPA LIAELDEARKRIAEIERQAEARRAITAQAAERHRQMLEAERDAARAAEAAEREKVQAI AMEALQAQERVGRAETVILQVKTLPGIKGRLVRWLAGDVLPD" gene complement(2704..3048) /locus_tag="Acry_3635" /pseudo /db_xref="GeneID:5159442" gene complement(3385..3825) /locus_tag="Acry_3636" /db_xref="GeneID:5159439" CDS complement(3385..3825) /locus_tag="Acry_3636" /note="PFAM: protein of unknown function DUF29" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF29" /protein_id="YP_001220369.1" /db_xref="InterPro:IPR002636" /db_xref="GI:148244136" /db_xref="GeneID:5159439" /translation="MSTSTLYDRDFYAWANEQAGLLRAGKLTQADIEHIAEEIESMGK TEKRELISRLAVLLTHLLKWQYQPVRRGASWEVTIRIQRRDLARHLRDNPSLQAKLDE AISDAYGDAILAAYGETAIPKQTFPTTCPWSFDQMMAEDFWPEA" gene complement(3839..4234) /locus_tag="Acry_3637" /db_xref="GeneID:5159438" CDS complement(3839..4234) /locus_tag="Acry_3637" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001220370.1" /db_xref="GI:148244137" /db_xref="GeneID:5159438" /translation="MLSQRRAAQAWGISRATLQRAVSSGKISVLPDGTIDPAEMLRAF GEAKGGPPGHHNEPLGPPLGRGDEMAFQAEIRVLKAQIEAKEALLSAKDRHIEDLSQA LRLLAGPPAPAPQPSLLARLFSRQKPPRS" gene complement(4247..4822) /locus_tag="Acry_3638" /db_xref="GeneID:5159441" CDS complement(4247..4822) /locus_tag="Acry_3638" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001220371.1" /db_xref="GI:148244138" /db_xref="GeneID:5159441" /translation="MSKVPPKTVGLATAPSGTWVQTERAAHERWAKLIGSHPKAAALM HVIVGNMGRHNALVASVPNLQRMMGCSRNTALRAINVLKEQNWIEVRQLGGVGTTNAY IVNDRVAWTGSRDGIRYSLFSAAVLVSDDEQPDKAEIGAQPPLERVPALYPGDRQLPT GNGLDPPTQPPLVGLEPDLPAQVKEPHGPHD" ORIGIN 1 tgacaaaaaa cgtccaaacc cgtcccatca gctatgggac taccccgtcc catcagctat 61 gggactaccc ccccctataa aatattgatt taattcatta tttttttcac tccttctatg 121 atctagagga gcacccccga agggggctgc ctgccgtgca ggtagtccac ggggatgcgt 181 agcggagcgc cccgatagga ggctggcgac gcgcagccat tccggtgggc ccacctgtgc 241 ggactggctg atcaggcggc cctcggggcc gatgattgaa ggagcggaaa gccgctgacg 301 cggcttaatc atgaacggcg gccctgaagg gccgcgcggg accagggcga gggaccggcg 361 cgggcgcgct gcgccctccg ggtctcccgc gctgcgctcg acccgcgcca cgaggtgaga 421 gacggcgacg cgggaagcaa aggcggcatt gggggcgatg cggcgaggat ggccgtaaaa 481 tcccgtcaga cgggcgtaca caggtttttg gggttttctg ctcccctttc agcgtccgat 541 ccgcaaggcc gctctacggc ctcctgaggg gctggaatgg gcattccgga ttagtagccg 601 cgtgggatga ccagcctgat atgccccttg gtggttaccc aaccgccgtg ctggtcactg 661 ctggcctcga agcagagatg accgccgcag gtctgccact tcacccgcgc acccttggcc 721 ttgagtgcct tgaggttggc ccgttcggtc tggatctcgg cccgcagggc ctctgcacgt 781 caatagaaca cagcacaacc acagcagagt cacaccataa agtccgccat aatcacggca 841 gatacgatgc aaaaacacaa catgtccgct gcatatctgc gccagaaacc ccgccaaacc 901 cccgccacta tgcgggcgga aagttcagga gagaagtcac agaccattgc acctttggag 961 cctccggaca tgaaagcgca ttgacccgcc ccggtgcggt cctcgcggcc cggaatggca 1021 gcaatcctga gcgcgtctgt ccctctgccc tgaccttcgc tggggcaccg aactgcaccc 1081 cttggggtgc aatcgcggca ctagtgtcgt tgtcggaaaa tgtggggtat gctcgcgagc 1141 atgagcaagc actcgatggc ctcgttacgg gagcgccggg cggcgcttgg cctggttcag 1201 atgaatctct ggatcaggga agaggaccgc gcggcgttca ccgcggcggt tgcgccgttc 1261 aagcagcggg ccggggagct ggacccggcg cagcggcccg gcaggaaacg ccaggagttc 1321 gccagagcgt cgtcccggcc ggtggcacgg cagaagccgc cagaggctcc ccagaggccc 1381 gcagaaaggc gatcggcacc cagaccggcg attgccctgc cctgtcggct gatcttcccc 1441 accaggccgc ccgcccgcct ccgcaatgcg atgaaggagg atgggtggtt ctacgacaaa 1501 ctcaccggca cctggaccgc tgatgaggct gaaccggtcg aactctggat cgatgaattg 1561 gttcgcgatt ggggcggtcg gatcatcgca ccggcaggcg gataatttcc ccggcatcct 1621 cgtggcaaga actagtgctt aattaccaaa gggcgcactt acgagttgct gcgcaactca 1681 gtgtgctgga ggtacagaca aggcagggcg gttaatccgg gcaagcggct ttcgccgcag 1741 aaagcgcgtg agacggccat tagcgtcttg tgagacggtg tggtgcgcac tctatggatt 1801 gtgccataac tctggttgcg gggcggttca gtgcgtcgcg tgagacgatg aacgagatcg 1861 atccaaaacg ccaggagcgg aacaagcggt atcgtacggg gcttgaggag cgcggtatca 1921 aggcgtttca ggtggtggcc ccagagacgg ctaaggggct gtttcggcga gcagcggaac 1981 tgatgacccg cgacaatgac ccaatggagc cacgtcaagc catgcgtctg gttggcgggg 2041 caaatgagcc ggaattgggt gatagtgcac cagcattgat cgctgagctg gacgaggcac 2101 ggaagcggat tgctgagatc gagcgtcagg cggaggcgag aagggctatc acggcgcagg 2161 ctgccgaacg gcataggcag atgttggagg ccgagcggga tgcagcgagg gcagcagagg 2221 ccgcagagcg tgagaaggta caggcgatcg ccatggaggc tctgcaagcc caagagcgag 2281 taggtcgagc cgaaactgtc atcctgcagg ttaagacctt gccgggaatc aagggccgtc 2341 tggtgcgctg gctggcagga gacgtactgc cggattagct gtccggaatc gaccgtattc 2401 ggacaggtaa ttttaccatg cccataaatt aggcttctag agttatggac aatcaaatac 2461 tattgaacat ggttttaatc tcgggattct ggacggttca atcatcggtg tgagccgaac 2521 ctgagttacg gcctcgacga cgaaacgaaa agatatttga tcagagcggc gattatcaaa 2581 acaatcaacg tcatgatggc aataccgaac agcgccatac ctcccatcat ccagccgccc 2641 atcataccat gcatcatcgg gttgctccgt gtttcagtca gccttgccca tcatcccgcg 2701 catcattgcc ggcatcccat ccttcgcaaa gcgatcgagc tcccgtgcat gggcatagat 2761 cacctttacc atttccggat cgtccgaagt ttcggtgacc tgaatcccgg taggtaagag 2821 tttataagat cgtttatact tcgtgctgtt ggcaaacatg gccggtacac tgttgctcat 2881 cgggtaggga aatggtcgat tctcagcgag gcgattatac atttcgatca cgtgcgcctg 2941 gatgaggtga gcggttgttg gattactcga aacagtggtg tcaattatgc cgttgggcat 3001 gtagtccgta gcgcgcgtga tctccgtatg tcgctcgaat agtttcatgc cgagcttcat 3061 cggccccatc atgttgctgc gggacatcat gccctgcatg tccatgtggg acatatttga 3121 tcccatcatt ccgcccatca ttccgccaga tgaacccgta gtatctgcgg actgtgcagc 3181 ggcgcatcgt ggtccaagac cgagaagggc gagaaagccg gaaaatgtgc tgccaaggat 3241 agcggagagg gtacgacgct tcatgaggtt tcacatctct cgattgattg ggatggcaaa 3301 acaagtctaa accttaccat catggcagtg taaagaaagc gtcagaatct cgaattatgg 3361 aaaacgtgga cactacgcgt ccttttaggc ttccggccag aagtcttcgg ccatcatttg 3421 gtcgaaggac caggggcagg tggtggggaa ggtttgctta ggtatagccg tttcaccgta 3481 tgccgcgagg attgcatcgc cataggcatc gctgatggct tcgtcgagct tggcttggag 3541 gcttgggttg tcacgtagat gacgggcaag atcacggcgc tgaatgcgga tagtcacttc 3601 ccatgacgct ccacggcgga caggctgata ttgccatttc aagagatgcg tgaggagtac 3661 tgcgaggcgg ctgatcagtt cccgcttctc ggtcttgccc atgctctcga tctcctcggc 3721 gatgtgttca atgtcggcct gcgtcagctt cccagcgcgc agaagtccgg cctgttcatt 3781 cgcccaggcg tagaaatcgc ggtcatagag ggtcgatgtg ctcatggtat taattctatc 3841 acgaacgggg cggcttctgg cgggaaaata gcctggccag cagagacggc tgtggtgccg 3901 gcgctggcgg gccagcgagc agccggagcg cctggctcaa atcctcgatg tgccgatcct 3961 tcgcggagag cagagcctcc ttggcttcga tctgcgcttt gagcacccgg atttcggcct 4021 gaaaagccat ctcatccccc cggcccaggg gtggcccaag tggctcattg tggtggcccg 4081 gtgggccacc cttggcttcg ccaaaggcgc gaagcatctc tgccggatca atcgttccat 4141 ccggcaaaac actaattttt ccgctggata cggcccgctg tagggtggct ctggatatcc 4201 cccaggcttg ggcggctcgc ctctggctca gcatggccca agtggctcaa tcatgtggcc 4261 catgtggctc tttcacttgg gccggtaggt ctggctctaa cccgaccagc ggaggctgcg 4321 tcggcggatc gaggccgttt ccagtcggca attggcggtc tcccggatac aaagcaggaa 4381 cccgctctag gggcggctgt gcaccaattt cggccttgtc tggctgttcg tcgtcggaaa 4441 ccagtaccgc cgcactgaac aggctgtagc gtatgccatc gcggctccca gtccatgcca 4501 cgcgatcatt cacgatgtag gcgtttgttg ttccgacacc gcctagctga cggacctcaa 4561 tccaattttg ttccttcagc acgttgatcg cacggagagc ggtattccga gagcaaccca 4621 tcatccgctg aaggttaggg acgctggcta ccaaggcatt gtgacgtccc atgttgccta 4681 cgatgacgtg catgagtgcc gcagccttgg ggtgggagcc gatgagtttt gcccatcgct 4741 catgtgctgc cctttcggtt tgcacccatg ttccgctcgg cgctgtagcg agaccgacgg 4801 tttttggggg aactttcgac atgggactac cccgtctcac tcatgaacaa tgattgtcag 4861 tacgtagaca atcaatgtct attttagcgg acatttaatg tcaatgaac //