GENEMARK PREDICTIONS Sequence: gi|15004705|ref|NC_001988.2| Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence Sequence file: NC_001988.fna Sequence length: 192000 GC Content: 30.91% Window length: 96 Window step: 12 Threshold value: 0.500 --- Matrix: - Matrix author: - Matrix order: 2 List of Open reading frames predicted as CDSs, shown with alternate starts (regions from start to stop codon w/ coding function >0.50) Left Right DNA Coding Avg Start end end Strand Frame Prob Prob -------- -------- ---------- ----- ---- ---- 43 798 direct fr 1 0.77 .... 364 798 direct fr 1 0.74 0.00 391 798 direct fr 1 0.73 0.08 691 798 direct fr 1 0.57 0.67 1359 3944 direct fr 3 0.95 0.25 1716 3944 direct fr 3 0.96 0.02 1893 3944 direct fr 3 0.96 0.00 1998 3944 direct fr 3 0.96 0.16 4107 6680 direct fr 3 0.95 0.08 4146 6680 direct fr 3 0.97 0.98 4461 6680 direct fr 3 0.97 0.01 4647 6680 direct fr 3 0.97 0.01 5121 6680 direct fr 3 0.96 0.01 7071 7931 direct fr 3 0.85 0.02 7080 7931 direct fr 3 0.85 0.03 7113 7931 direct fr 3 0.89 0.02 7230 7931 direct fr 3 0.96 0.01 7536 7931 direct fr 3 0.94 0.02 8059 8373 complement fr 3 0.66 0.07 8059 8370 complement fr 3 0.66 0.09 8487 9200 complement fr 2 0.89 0.98 8487 9155 complement fr 2 0.93 0.04 8487 9086 complement fr 2 0.92 0.02 8487 9023 complement fr 2 0.91 0.29 10015 11094 direct fr 1 0.89 0.96 10021 11094 direct fr 1 0.90 0.91 10189 11094 direct fr 1 0.91 0.38 10198 11094 direct fr 1 0.91 0.32 10288 11094 direct fr 1 0.90 0.60 11140 12549 direct fr 1 0.91 0.76 11242 12549 direct fr 1 0.93 0.00 11248 12549 direct fr 1 0.93 0.00 11350 12549 direct fr 1 0.92 0.21 13016 13348 direct fr 2 0.66 0.93 13175 13348 direct fr 2 0.74 0.01 13211 13348 direct fr 2 0.68 0.33 13430 14539 complement fr 1 0.88 0.80 13430 14524 complement fr 1 0.89 0.49 13430 14323 complement fr 1 0.89 0.44 13430 14266 complement fr 1 0.88 0.00 13430 14257 complement fr 1 0.88 0.00 14568 15089 complement fr 2 0.86 0.09 14568 14813 complement fr 2 0.71 0.73 14568 14807 complement fr 2 0.70 0.56 15822 16667 direct fr 3 0.81 0.32 15858 16667 direct fr 3 0.85 0.41 15861 16667 direct fr 3 0.85 0.40 16080 16667 direct fr 3 0.81 0.00 16356 16667 direct fr 3 0.71 0.50 16380 16667 direct fr 3 0.75 0.52 16563 16667 direct fr 3 0.60 0.10 16664 17173 complement fr 1 0.54 0.12 16664 17158 complement fr 1 0.57 0.10 17759 17866 direct fr 2 0.73 0.28 19035 20219 complement fr 2 0.86 0.00 19035 20114 complement fr 2 0.91 0.54 19035 20066 complement fr 2 0.91 0.00 19035 19826 complement fr 2 0.88 0.01 20244 21656 complement fr 2 0.87 0.48 20244 21587 complement fr 2 0.87 0.55 20244 21575 complement fr 2 0.87 0.62 22283 23368 complement fr 1 0.53 0.08 22283 22438 complement fr 1 0.53 0.09 22283 22435 complement fr 1 0.53 0.17 22632 22763 direct fr 3 0.54 0.32 24308 24769 complement fr 1 0.64 0.13 24308 24730 complement fr 1 0.65 0.02 24308 24553 complement fr 1 0.60 0.20 24939 26618 direct fr 3 0.93 0.34 24945 26618 direct fr 3 0.93 0.48 25068 26618 direct fr 3 0.96 0.15 25338 26618 direct fr 3 0.96 0.52 25635 26618 direct fr 3 0.96 0.04 26782 27360 direct fr 1 0.76 0.72 27199 27360 direct fr 1 0.59 0.03 27223 27360 direct fr 1 0.52 0.00 27517 29364 direct fr 1 0.91 0.20 27520 29364 direct fr 1 0.91 0.15 27613 29364 direct fr 1 0.92 0.05 27637 29364 direct fr 1 0.92 0.32 27679 29364 direct fr 1 0.91 0.01 29416 30021 complement fr 3 0.75 0.21 29416 29979 complement fr 3 0.79 0.00 29416 29832 complement fr 3 0.78 0.13 29416 29811 complement fr 3 0.80 0.06 29416 29772 complement fr 3 0.82 0.92 29416 29736 complement fr 3 0.80 0.01 29416 29700 complement fr 3 0.78 0.06 30112 31311 direct fr 1 0.75 0.25 30118 31311 direct fr 1 0.75 0.36 30154 31311 direct fr 1 0.77 0.36 30175 31311 direct fr 1 0.76 0.18 30343 31311 direct fr 1 0.77 0.21 31330 31893 direct fr 1 0.85 0.68 31363 31893 direct fr 1 0.90 0.02 31519 31893 direct fr 1 0.87 0.07 31696 31893 direct fr 1 0.76 0.05 31978 32286 direct fr 1 0.69 0.88 31999 32286 direct fr 1 0.75 0.95 32062 32286 direct fr 1 0.79 0.19 32092 32286 direct fr 1 0.75 0.03 32400 32720 direct fr 3 0.69 0.36 32544 32720 direct fr 3 0.71 0.01 32783 33139 direct fr 2 0.76 0.90 32906 33139 direct fr 2 0.78 0.40 32948 33139 direct fr 2 0.75 0.04 33317 33637 direct fr 2 0.78 0.95 33461 33637 direct fr 2 0.81 0.17 33722 36298 complement fr 1 0.90 0.78 33722 35755 complement fr 1 0.95 0.00 33722 35713 complement fr 1 0.95 0.05 33722 35620 complement fr 1 0.95 0.01 36772 37500 complement fr 3 0.88 0.98 36772 37377 complement fr 3 0.87 0.15 36772 37059 complement fr 3 0.73 0.03 37519 38193 complement fr 3 0.84 0.06 37519 38148 complement fr 3 0.84 0.90 37519 37875 complement fr 3 0.75 0.03 38411 38701 direct fr 2 0.59 0.15 38787 39218 complement fr 2 0.69 0.02 38787 39206 complement fr 2 0.71 0.05 38787 39164 complement fr 2 0.79 0.18 38787 39092 complement fr 2 0.77 0.56 39498 40829 complement fr 2 0.79 0.20 39498 40667 complement fr 2 0.77 0.04 39498 40598 complement fr 2 0.76 0.11 39498 40568 complement fr 2 0.75 0.03 41674 42222 direct fr 1 0.65 0.28 41698 42222 direct fr 1 0.68 0.44 41764 42222 direct fr 1 0.70 0.38 41794 42222 direct fr 1 0.69 0.03 41884 42222 direct fr 1 0.62 0.09 42274 43593 complement fr 3 0.59 0.05 42274 43578 complement fr 3 0.60 0.09 42274 43296 complement fr 3 0.66 0.54 42274 43221 complement fr 3 0.65 0.06 42274 43164 complement fr 3 0.64 0.05 42274 43149 complement fr 3 0.64 0.17 42274 43101 complement fr 3 0.66 0.23 43702 44697 complement fr 3 0.82 0.41 43702 44688 complement fr 3 0.83 0.19 43702 44610 complement fr 3 0.88 0.52 43702 44574 complement fr 3 0.88 0.95 43702 44448 complement fr 3 0.86 0.01 44778 45998 complement fr 2 0.89 0.20 44778 45956 complement fr 2 0.91 0.55 44778 45827 complement fr 2 0.90 0.01 44778 45785 complement fr 2 0.90 0.33 46233 46799 direct fr 3 0.73 0.92 46275 46799 direct fr 3 0.72 0.00 46329 46799 direct fr 3 0.74 0.44 46802 47548 complement fr 1 0.75 0.91 46802 47017 complement fr 1 0.83 0.35 46802 46987 complement fr 1 0.83 0.31 46802 46927 complement fr 1 0.75 0.10 47893 49041 direct fr 1 0.88 0.78 47929 49041 direct fr 1 0.91 0.21 47992 49041 direct fr 1 0.90 0.00 48016 49041 direct fr 1 0.90 0.18 49363 50589 complement fr 3 0.75 0.06 49363 50499 complement fr 3 0.77 0.73 49363 50472 complement fr 3 0.76 0.01 49363 50409 complement fr 3 0.76 0.02 50765 52258 direct fr 2 0.91 0.99 50912 52258 direct fr 2 0.92 0.14 51002 52258 direct fr 2 0.92 0.01 51074 52258 direct fr 2 0.92 0.01 52305 53036 complement fr 2 0.85 0.96 52305 53027 complement fr 2 0.86 0.99 52305 52985 complement fr 2 0.86 0.03 52305 52847 complement fr 2 0.85 0.94 53038 53481 complement fr 3 0.86 0.92 53038 53436 complement fr 3 0.88 0.05 53038 53385 complement fr 3 0.86 0.05 53626 54582 complement fr 3 0.88 0.12 53626 54489 complement fr 3 0.93 0.22 53626 54309 complement fr 3 0.91 0.27 53626 53913 complement fr 3 0.80 0.16 54616 55443 complement fr 3 0.81 0.01 54616 55365 complement fr 3 0.90 0.05 54616 55188 complement fr 3 0.89 0.65 54616 55110 complement fr 3 0.88 0.36 54616 55092 complement fr 3 0.87 0.15 55714 56517 direct fr 1 0.72 0.22 55795 56517 direct fr 1 0.77 0.78 55900 56517 direct fr 1 0.73 0.07 56002 56517 direct fr 1 0.76 0.19 56818 57954 direct fr 1 0.93 0.13 57229 57954 direct fr 1 0.93 0.00 57574 57954 direct fr 1 0.86 0.01 58017 59141 complement fr 2 0.84 0.15 58017 59138 complement fr 2 0.84 0.13 58017 59123 complement fr 2 0.85 0.19 58017 58970 complement fr 2 0.88 0.00 58017 58538 complement fr 2 0.87 0.03 58017 58412 complement fr 2 0.83 0.01 59107 59727 complement fr 3 0.91 0.06 59107 59697 complement fr 3 0.95 0.63 59107 59682 complement fr 3 0.95 0.91 59107 59622 complement fr 3 0.94 0.05 60118 61275 complement fr 3 0.94 0.69 60118 61239 complement fr 3 0.94 0.01 60118 61113 complement fr 3 0.93 0.05 61507 62169 complement fr 3 0.74 0.88 61507 62142 complement fr 3 0.77 0.28 61507 61953 complement fr 3 0.80 0.12 61507 61935 complement fr 3 0.80 0.01 61507 61833 complement fr 3 0.74 0.04 62341 62616 complement fr 3 0.65 0.47 62845 63318 complement fr 3 0.87 0.71 62845 63309 complement fr 3 0.89 0.43 62845 63072 complement fr 3 0.79 0.24 62845 63051 complement fr 3 0.78 0.01 63631 64926 direct fr 1 0.82 0.56 63859 64926 direct fr 1 0.84 0.97 63880 64926 direct fr 1 0.83 0.20 63925 64926 direct fr 1 0.83 0.32 65300 66187 complement fr 1 0.91 0.80 65300 66172 complement fr 1 0.92 0.73 65300 66052 complement fr 1 0.93 0.01 65300 66031 complement fr 1 0.93 0.01 65300 65956 complement fr 1 0.94 0.69 66595 68667 direct fr 1 0.95 0.83 66775 68667 direct fr 1 0.97 0.00 66868 68667 direct fr 1 0.97 0.00 66895 68667 direct fr 1 0.97 0.02 69541 70518 direct fr 1 0.96 0.71 69604 70518 direct fr 1 0.96 0.00 69628 70518 direct fr 1 0.96 0.75 70552 71358 direct fr 1 0.86 0.57 70573 71358 direct fr 1 0.89 0.66 70609 71358 direct fr 1 0.89 0.01 70723 71358 direct fr 1 0.87 0.11 71306 72289 direct fr 2 0.79 0.00 71309 72289 direct fr 2 0.79 0.00 71324 72289 direct fr 2 0.79 0.46 71378 72289 direct fr 2 0.81 0.48 71468 72289 direct fr 2 0.79 0.82 71687 72289 direct fr 2 0.72 0.00 72543 72950 direct fr 3 0.78 0.83 72576 72950 direct fr 3 0.83 0.96 72657 72950 direct fr 3 0.86 0.04 72843 72950 direct fr 3 0.63 0.07 73055 73906 complement fr 1 0.88 0.96 73055 73882 complement fr 1 0.90 0.93 73055 73753 complement fr 1 0.92 0.34 73055 73729 complement fr 1 0.91 0.10 73055 73642 complement fr 1 0.90 0.28 74067 75437 complement fr 2 0.86 0.09 74067 75389 complement fr 2 0.89 0.52 74067 75266 complement fr 2 0.95 0.71 74067 75170 complement fr 2 0.94 0.25 74067 74993 complement fr 2 0.93 0.02 75328 75453 direct fr 1 0.51 0.19 76046 76222 direct fr 2 0.61 0.85 76346 78565 direct fr 2 0.87 0.20 76370 78565 direct fr 2 0.88 0.03 76649 78565 direct fr 2 0.88 0.02 76721 78565 direct fr 2 0.88 0.25 77000 78565 direct fr 2 0.87 0.06 77063 78565 direct fr 2 0.89 0.80 77126 78565 direct fr 2 0.90 0.13 78578 79096 direct fr 2 0.79 0.95 78629 79096 direct fr 2 0.80 0.01 78881 79096 direct fr 2 0.79 0.03 79205 79906 complement fr 1 0.82 0.22 79205 79849 complement fr 1 0.83 0.23 79205 79831 complement fr 1 0.83 0.70 80094 80870 direct fr 3 0.85 0.11 80277 80870 direct fr 3 0.89 0.45 80490 80870 direct fr 3 0.84 0.02 80535 80870 direct fr 3 0.82 0.75 80971 82002 complement fr 3 0.87 0.95 80971 81888 complement fr 3 0.87 0.02 80971 81864 complement fr 3 0.87 0.01 80971 81801 complement fr 3 0.86 0.31 82040 83218 complement fr 1 0.91 0.88 82040 82876 complement fr 1 0.94 0.00 82040 82867 complement fr 1 0.94 0.00 82040 82819 complement fr 1 0.94 0.24 83321 83905 complement fr 1 0.87 0.66 83321 83632 complement fr 1 0.79 0.02 84265 85236 direct fr 1 0.73 0.66 84271 85236 direct fr 1 0.73 0.65 84298 85236 direct fr 1 0.75 0.68 84361 85236 direct fr 1 0.77 0.03 84418 85236 direct fr 1 0.76 0.54 84694 85236 direct fr 1 0.65 0.00 85467 85727 direct fr 3 0.67 0.97 85479 85727 direct fr 3 0.69 0.99 85834 86400 complement fr 3 0.67 0.56 85834 86220 complement fr 3 0.53 0.03 85834 86160 complement fr 3 0.52 0.17 86595 87359 direct fr 3 0.88 0.56 86658 87359 direct fr 3 0.91 0.04 86676 87359 direct fr 3 0.90 0.07 86784 87359 direct fr 3 0.89 0.01 87713 88051 direct fr 2 0.75 0.39 87719 88051 direct fr 2 0.75 0.16 87728 88051 direct fr 2 0.77 0.13 87785 88051 direct fr 2 0.85 0.89 88076 88258 complement fr 1 0.51 0.01 88460 89674 complement fr 1 0.62 0.10 88460 89665 complement fr 1 0.62 0.05 88460 89608 complement fr 1 0.65 0.03 88460 89563 complement fr 1 0.68 0.06 88460 89500 complement fr 1 0.69 0.73 88460 89482 complement fr 1 0.70 0.43 88460 89137 complement fr 1 0.64 0.73 88460 89110 complement fr 1 0.63 0.37 90048 90098 direct fr 3 0.50 0.09 90718 91284 direct fr 1 0.79 0.48 90814 91284 direct fr 1 0.79 0.45 90937 91284 direct fr 1 0.73 0.38 91003 91284 direct fr 1 0.67 0.69 91286 92530 direct fr 2 0.84 0.45 91340 92530 direct fr 2 0.86 0.08 91667 92530 direct fr 2 0.85 0.51 91679 92530 direct fr 2 0.85 0.93 93168 93635 complement fr 2 0.60 0.00 93168 93632 complement fr 2 0.60 0.00 93168 93581 complement fr 2 0.64 0.05 93168 93509 complement fr 2 0.63 0.94 93168 93452 complement fr 2 0.56 0.06 93168 93365 complement fr 2 0.58 0.07 93821 94669 complement fr 1 0.78 0.01 93821 94663 complement fr 1 0.77 0.10 93821 94573 complement fr 1 0.81 0.90 94702 94932 complement fr 3 0.64 0.87 94702 94926 complement fr 3 0.64 0.94 94702 94902 complement fr 3 0.71 0.98 94702 94818 complement fr 3 0.62 0.20 95156 97177 complement fr 1 0.93 0.95 95156 97054 complement fr 1 0.94 0.00 95156 96874 complement fr 1 0.94 0.19 95156 96529 complement fr 1 0.93 0.76 97187 98131 complement fr 1 0.86 0.94 97187 98083 complement fr 1 0.90 0.04 97187 98035 complement fr 1 0.90 0.41 97187 97927 complement fr 1 0.89 0.36 98144 98473 complement fr 1 0.69 0.08 98144 98368 complement fr 1 0.56 0.32 98144 98299 complement fr 1 0.60 0.74 98641 98742 complement fr 3 0.54 0.93 99168 99500 complement fr 2 0.74 0.23 99168 99464 complement fr 2 0.79 0.19 99168 99266 complement fr 2 0.53 0.01 99519 100418 complement fr 2 0.87 0.93 99519 100289 complement fr 2 0.88 0.00 99519 100199 complement fr 2 0.86 0.12 99519 100133 complement fr 2 0.85 0.04 100797 102482 complement fr 2 0.95 0.37 100797 102356 complement fr 2 0.96 0.12 100797 102077 complement fr 2 0.95 0.27 100797 101879 complement fr 2 0.94 0.00 102908 104797 complement fr 1 0.92 0.51 102908 104674 complement fr 1 0.93 0.03 102908 104527 complement fr 1 0.93 0.06 102908 104524 complement fr 1 0.93 0.03 105222 105797 complement fr 2 0.80 0.87 105222 105587 complement fr 2 0.81 0.00 105222 105413 complement fr 2 0.66 0.18 105926 106165 complement fr 1 0.51 0.53 106508 109702 direct fr 2 0.84 0.00 106526 109702 direct fr 2 0.85 0.03 106544 109702 direct fr 2 0.85 0.13 106625 109702 direct fr 2 0.86 0.93 106634 109702 direct fr 2 0.86 0.62 106745 109702 direct fr 2 0.86 0.12 109863 110270 direct fr 3 0.73 0.29 109902 110270 direct fr 3 0.80 0.61 109917 110270 direct fr 3 0.83 0.44 109947 110270 direct fr 3 0.83 0.15 109980 110270 direct fr 3 0.81 0.04 110335 111321 direct fr 1 0.75 0.23 110422 111321 direct fr 1 0.76 0.99 110443 111321 direct fr 1 0.76 0.58 111324 111734 direct fr 3 0.80 0.11 111375 111734 direct fr 3 0.90 0.78 111501 111734 direct fr 3 0.85 0.02 111555 111734 direct fr 3 0.80 0.01 111784 113544 complement fr 3 0.96 0.59 111784 113487 complement fr 3 0.97 0.06 111784 113457 complement fr 3 0.97 0.02 111784 113400 complement fr 3 0.97 0.03 113673 114131 direct fr 3 0.80 0.46 113754 114131 direct fr 3 0.87 0.57 113790 114131 direct fr 3 0.86 0.06 113823 114131 direct fr 3 0.84 0.12 114217 114759 direct fr 1 0.74 0.21 114220 114759 direct fr 1 0.74 0.15 114223 114759 direct fr 1 0.74 0.18 114295 114759 direct fr 1 0.81 0.21 114424 114759 direct fr 1 0.85 0.22 114448 114759 direct fr 1 0.84 0.15 114920 116557 direct fr 2 0.69 0.39 114974 116557 direct fr 2 0.72 0.52 115019 116557 direct fr 2 0.72 0.52 115043 116557 direct fr 2 0.72 0.43 116756 117169 direct fr 2 0.79 0.11 116831 117169 direct fr 2 0.88 0.31 116915 117169 direct fr 2 0.84 0.04 116948 117169 direct fr 2 0.81 0.00 117240 117728 direct fr 3 0.83 0.42 117561 117728 direct fr 3 0.76 0.06 117904 118215 complement fr 3 0.70 0.74 117904 118188 complement fr 3 0.74 0.45 118611 119318 complement fr 2 0.86 0.76 118611 119201 complement fr 2 0.91 0.04 118611 119126 complement fr 2 0.90 0.23 118611 118976 complement fr 2 0.89 0.35 119550 121145 complement fr 2 0.93 0.25 119550 121085 complement fr 2 0.96 0.93 119550 121007 complement fr 2 0.95 0.00 119550 120953 complement fr 2 0.95 0.00 121197 122573 complement fr 2 0.93 0.80 121197 122552 complement fr 2 0.94 0.95 121197 122489 complement fr 2 0.95 0.01 121197 122456 complement fr 2 0.95 0.00 121197 122390 complement fr 2 0.94 0.03 122675 123649 complement fr 1 0.92 0.12 122675 123631 complement fr 1 0.93 0.21 122675 123559 complement fr 1 0.95 0.68 122675 123538 complement fr 1 0.95 0.22 123711 125036 complement fr 2 0.91 0.54 123711 124994 complement fr 2 0.91 0.00 123711 124895 complement fr 2 0.90 0.00 125085 126803 complement fr 2 0.94 0.03 125085 126746 complement fr 2 0.96 0.81 125085 126698 complement fr 2 0.96 0.04 125085 126491 complement fr 2 0.97 0.88 126868 128628 complement fr 3 0.94 0.10 126868 128592 complement fr 3 0.95 0.14 126868 128580 complement fr 3 0.96 0.13 126868 128436 complement fr 3 0.97 0.05 126868 128262 complement fr 3 0.97 0.55 126868 128172 complement fr 3 0.96 0.01 128646 130763 complement fr 2 0.94 0.05 128646 130520 complement fr 2 0.96 0.34 128646 130490 complement fr 2 0.96 0.06 128646 130394 complement fr 2 0.96 0.04 131085 132716 direct fr 3 0.67 0.07 131307 132716 direct fr 3 0.70 0.23 131376 132716 direct fr 3 0.70 0.12 132537 132716 direct fr 3 0.53 0.78 132573 132716 direct fr 3 0.54 0.04 132777 133496 complement fr 2 0.87 0.79 132777 133229 complement fr 2 0.80 0.12 132777 133142 complement fr 2 0.77 0.27 134414 135625 complement fr 1 0.78 0.04 134414 135595 complement fr 1 0.80 0.10 134414 135421 complement fr 1 0.80 0.78 134414 135403 complement fr 1 0.79 0.09 134414 135355 complement fr 1 0.78 0.06 135755 136105 complement fr 1 0.82 0.85 135755 136096 complement fr 1 0.85 0.97 135755 136069 complement fr 1 0.84 0.48 135755 136048 complement fr 1 0.83 0.03 136089 137318 complement fr 2 0.83 0.94 136089 137198 complement fr 2 0.85 0.29 136089 137150 complement fr 2 0.85 0.20 136089 137060 complement fr 2 0.83 0.04 137518 138165 complement fr 3 0.70 0.85 137518 138120 complement fr 3 0.72 0.13 137518 138003 complement fr 3 0.70 0.27 137518 137934 complement fr 3 0.65 0.03 138365 139810 direct fr 2 0.67 0.82 138398 139810 direct fr 2 0.69 0.45 138401 139810 direct fr 2 0.69 0.30 138476 139810 direct fr 2 0.71 0.89 138530 139810 direct fr 2 0.71 0.09 138539 139810 direct fr 2 0.71 0.04 138548 139810 direct fr 2 0.71 0.01 139943 140686 complement fr 1 0.86 0.78 139943 140605 complement fr 1 0.92 0.87 139943 140476 complement fr 1 0.90 0.02 139943 140470 complement fr 1 0.90 0.11 140963 141385 complement fr 1 0.81 0.27 141612 143081 direct fr 3 0.73 0.58 141621 143081 direct fr 3 0.74 0.59 141657 143081 direct fr 3 0.76 0.31 141666 143081 direct fr 3 0.76 0.23 141708 143081 direct fr 3 0.76 0.22 143316 144110 complement fr 2 0.85 0.05 143316 143999 complement fr 2 0.89 0.10 143316 143894 complement fr 2 0.88 0.01 143316 143885 complement fr 2 0.87 0.00 144202 145170 complement fr 3 0.81 0.20 144202 144969 complement fr 3 0.81 0.02 144202 144957 complement fr 3 0.81 0.03 144202 144819 complement fr 3 0.83 0.23 145186 146190 complement fr 3 0.86 0.41 145186 146166 complement fr 3 0.88 0.18 145186 146022 complement fr 3 0.88 0.02 145186 145887 complement fr 3 0.87 0.19 145186 145770 complement fr 3 0.84 0.14 146197 147369 complement fr 3 0.81 0.84 146197 147351 complement fr 3 0.81 0.79 146197 147162 complement fr 3 0.88 0.60 146197 147156 complement fr 3 0.88 0.76 146197 147015 complement fr 3 0.87 0.07 147373 148491 complement fr 3 0.95 0.25 147373 148281 complement fr 3 0.97 0.33 147373 148188 complement fr 3 0.96 0.18 147373 147936 complement fr 3 0.96 0.40 148507 149847 complement fr 3 0.77 0.82 148507 149733 complement fr 3 0.77 0.07 148507 149613 complement fr 3 0.78 0.42 148507 149088 complement fr 3 0.77 0.32 148507 148911 complement fr 3 0.75 0.03 149854 150108 complement fr 3 0.77 0.12 149854 150090 complement fr 3 0.81 0.49 150645 151889 direct fr 3 0.85 0.05 150726 151889 direct fr 3 0.83 0.92 150984 151889 direct fr 3 0.81 0.52 151983 152870 direct fr 3 0.89 0.75 151995 152870 direct fr 3 0.90 0.97 152019 152870 direct fr 3 0.92 0.97 152226 152870 direct fr 3 0.90 0.84 152388 152870 direct fr 3 0.87 0.03 153017 154303 direct fr 2 0.93 0.12 153095 154303 direct fr 2 0.93 0.32 153188 154303 direct fr 2 0.94 0.17 154300 154743 direct fr 1 0.74 0.98 154333 154743 direct fr 1 0.77 0.18 154357 154743 direct fr 1 0.76 0.01 154405 154743 direct fr 1 0.73 0.04 154745 155164 direct fr 2 0.69 0.30 154772 155164 direct fr 2 0.73 0.06 154799 155164 direct fr 2 0.77 0.15 154808 155164 direct fr 2 0.79 0.43 154982 155164 direct fr 2 0.71 0.01 155177 155437 direct fr 2 0.63 0.41 155712 156860 direct fr 3 0.85 0.09 155739 156860 direct fr 3 0.85 0.34 155742 156860 direct fr 3 0.85 0.52 156940 157626 complement fr 3 0.69 0.24 156940 157617 complement fr 3 0.71 0.16 156940 157605 complement fr 3 0.72 0.12 156940 157545 complement fr 3 0.76 0.70 156940 157500 complement fr 3 0.76 0.12 156940 157443 complement fr 3 0.74 0.00 156940 157296 complement fr 3 0.82 0.84 157821 158639 direct fr 3 0.86 0.50 158025 158639 direct fr 3 0.91 0.00 158283 158639 direct fr 3 0.84 0.06 158912 160216 complement fr 1 0.84 0.87 158912 160198 complement fr 1 0.84 0.56 158912 160126 complement fr 1 0.83 0.00 160677 162371 direct fr 3 0.96 0.93 160824 162371 direct fr 3 0.95 0.00 160860 162371 direct fr 3 0.95 0.22 162636 164894 direct fr 3 0.95 0.02 162666 164894 direct fr 3 0.96 0.40 162954 164894 direct fr 3 0.97 0.00 163338 164894 direct fr 3 0.96 0.01 163398 164894 direct fr 3 0.96 0.27 164923 165495 direct fr 1 0.74 0.05 164983 165495 direct fr 1 0.81 0.20 165100 165495 direct fr 1 0.83 0.14 165199 165495 direct fr 1 0.78 0.03 165616 165972 direct fr 1 0.79 0.26 165947 166639 direct fr 2 0.71 0.95 165953 166639 direct fr 2 0.73 0.86 165962 166639 direct fr 2 0.74 0.95 165965 166639 direct fr 2 0.74 0.93 165983 166639 direct fr 2 0.75 0.81 166004 166639 direct fr 2 0.77 0.06 166121 166639 direct fr 2 0.74 0.05 166313 166639 direct fr 2 0.71 0.86 166385 166639 direct fr 2 0.72 0.15 167061 168014 direct fr 3 0.88 0.14 167301 168014 direct fr 3 0.93 0.18 167412 168014 direct fr 3 0.93 0.00 167733 168014 direct fr 3 0.89 0.04 167895 168014 direct fr 3 0.74 0.19 168036 168767 complement fr 2 0.66 0.74 168036 168632 complement fr 2 0.64 0.70 168036 168494 complement fr 2 0.65 0.48 168036 168434 complement fr 2 0.60 0.02 168036 168386 complement fr 2 0.61 0.00 169010 170311 direct fr 2 0.94 0.56 169058 170311 direct fr 2 0.96 0.44 169076 170311 direct fr 2 0.96 0.01 169169 170311 direct fr 2 0.96 0.00 170341 170868 direct fr 1 0.71 0.03 170386 170868 direct fr 1 0.76 0.84 170671 170868 direct fr 1 0.71 0.85 170962 173865 complement fr 3 0.96 0.02 170962 173523 complement fr 3 0.97 0.00 170962 173481 complement fr 3 0.97 0.45 170962 173328 complement fr 3 0.97 0.03 174190 175146 direct fr 1 0.84 0.01 174298 175146 direct fr 1 0.94 0.66 174673 175146 direct fr 1 0.90 0.02 175810 178398 direct fr 1 0.92 0.85 175897 178398 direct fr 1 0.93 0.68 175927 178398 direct fr 1 0.93 0.09 175984 178398 direct fr 1 0.92 0.02 178459 179115 direct fr 1 0.84 0.08 178513 179115 direct fr 1 0.88 0.63 178522 179115 direct fr 1 0.88 0.48 178768 179115 direct fr 1 0.86 0.61 179117 179782 direct fr 2 0.87 0.72 179219 179782 direct fr 2 0.92 0.00 179285 179782 direct fr 2 0.90 0.13 179492 179782 direct fr 2 0.84 0.00 179848 180627 complement fr 3 0.82 0.04 179848 180591 complement fr 3 0.86 0.49 179848 180582 complement fr 3 0.88 0.43 179848 180465 complement fr 3 0.89 0.73 179848 180444 complement fr 3 0.88 0.02 180992 181546 direct fr 2 0.52 0.48 181586 183835 complement fr 1 0.95 0.06 181586 183790 complement fr 1 0.97 0.38 181586 183757 complement fr 1 0.97 0.36 181586 183703 complement fr 1 0.97 0.01 184396 184614 direct fr 1 0.67 0.95 184635 184850 direct fr 3 0.62 0.93 185130 185348 direct fr 3 0.65 0.79 185360 185584 direct fr 2 0.62 0.28 185369 185584 direct fr 2 0.66 0.81 185450 185584 direct fr 2 0.71 0.03 185836 186987 direct fr 1 0.77 0.16 186049 186987 direct fr 1 0.80 0.74 186064 186987 direct fr 1 0.80 0.92 186091 186987 direct fr 1 0.80 0.20 186997 187422 direct fr 1 0.64 0.14 187003 187422 direct fr 1 0.64 0.04 188765 189883 complement fr 1 0.84 0.02 188765 189808 complement fr 1 0.90 0.56 188765 189775 complement fr 1 0.91 0.75 188765 189754 complement fr 1 0.91 0.27 188765 189688 complement fr 1 0.90 0.04 190149 190448 complement fr 2 0.68 0.03 190149 190436 complement fr 2 0.71 0.23 190149 190265 complement fr 2 0.52 0.27 190602 191351 complement fr 2 0.89 0.93 190602 191273 complement fr 2 0.88 0.01 190602 191072 complement fr 2 0.84 0.04 191582 191998 complement fr 1 0.77 .... 191582 191779 complement fr 1 0.67 0.28 191582 191704 complement fr 1 0.53 0.14 List of Regions of interest (regions from stop to stop codon w/ a signal in between) LEnd REnd Strand Frame -------- -------- ----------- ----- 28 798 direct fr 1 420 653 complement fr 2 1332 3944 direct fr 3 4104 6680 direct fr 3 6978 7931 direct fr 3 7043 7213 complement fr 1 8059 8388 complement fr 3 8487 9209 complement fr 2 9207 9410 complement fr 2 9985 11094 direct fr 1 11119 12549 direct fr 1 12610 12876 complement fr 3 13010 13348 direct fr 2 13430 14554 complement fr 1 14568 15578 complement fr 2 15816 16667 direct fr 3 16664 17176 complement fr 1 17621 17866 direct fr 2 17674 18810 complement fr 3 18218 18379 direct fr 2 18798 19037 complement fr 2 19035 20228 complement fr 2 20056 20448 direct fr 1 20244 21878 complement fr 2 21876 22094 complement fr 2 22283 23401 complement fr 1 22419 22763 direct fr 3 22785 23042 direct fr 3 23499 23996 complement fr 2 24308 24796 complement fr 1 24912 26618 direct fr 3 26752 27360 direct fr 1 27481 29364 direct fr 1 29416 30051 complement fr 3 30085 31311 direct fr 1 30945 31202 complement fr 2 31309 31893 direct fr 1 31963 32286 direct fr 1 32367 32720 direct fr 3 32759 33139 direct fr 2 33299 33637 direct fr 2 33722 36301 complement fr 1 35763 36092 direct fr 3 36772 37521 complement fr 3 37439 37696 direct fr 2 37519 38289 complement fr 3 38390 38701 direct fr 2 38787 39227 complement fr 2 39498 40862 complement fr 2 41118 41507 direct fr 3 41653 42222 direct fr 1 42274 43605 complement fr 3 43702 44712 complement fr 3 44778 46016 complement fr 2 45388 45675 direct fr 1 46185 46799 direct fr 3 46802 47551 complement fr 1 47875 49041 direct fr 1 48945 49097 complement fr 2 49095 49253 complement fr 2 49363 50610 complement fr 3 49592 49861 direct fr 2 50738 52258 direct fr 2 51226 51555 complement fr 3 52305 53045 complement fr 2 53038 53520 complement fr 3 53626 54612 complement fr 3 54616 55494 complement fr 3 55699 56517 direct fr 1 55845 56306 complement fr 2 56749 57954 direct fr 1 58017 59183 complement fr 2 59107 59757 complement fr 3 60118 61341 complement fr 3 61507 62184 complement fr 3 62341 62634 complement fr 3 62845 63351 complement fr 3 63607 64926 direct fr 1 64377 64742 complement fr 2 65300 66196 complement fr 1 66580 68667 direct fr 1 69272 69442 direct fr 2 69466 70518 direct fr 1 70516 71358 direct fr 1 71258 72289 direct fr 2 72534 72950 direct fr 3 73055 73912 complement fr 1 74067 75452 complement fr 2 75232 75453 direct fr 1 76028 76222 direct fr 2 76325 78565 direct fr 2 78563 79096 direct fr 2 79205 79975 complement fr 1 80079 80870 direct fr 3 80971 82038 complement fr 3 82040 83224 complement fr 1 83321 84052 complement fr 1 84253 85236 direct fr 1 85455 85727 direct fr 3 85834 86517 complement fr 3 85913 86149 direct fr 2 86559 87359 direct fr 3 87677 88051 direct fr 2 88076 88327 complement fr 1 88460 89680 complement fr 1 90667 91284 direct fr 1 91152 91289 direct fr 3 91271 92530 direct fr 2 93168 93833 complement fr 2 93821 94768 complement fr 1 94005 94229 direct fr 3 94702 94938 complement fr 3 95156 97189 complement fr 1 97187 98134 complement fr 1 98144 98689 complement fr 1 98641 98790 complement fr 3 99168 99521 complement fr 2 99519 100460 complement fr 2 100797 102512 complement fr 2 102908 104815 complement fr 1 105222 105803 complement fr 2 105926 106168 complement fr 1 106469 109702 direct fr 2 107467 107688 complement fr 3 109366 109764 complement fr 3 109854 110270 direct fr 3 110257 111321 direct fr 1 110484 110723 complement fr 2 111306 111734 direct fr 3 111784 113550 complement fr 3 113619 114131 direct fr 3 114214 114759 direct fr 1 114905 116557 direct fr 2 115483 115764 complement fr 3 115762 115944 complement fr 3 116735 117169 direct fr 2 117192 117728 direct fr 3 117725 117886 complement fr 1 117904 118248 complement fr 3 118611 119321 complement fr 2 119550 121154 complement fr 2 121197 122588 complement fr 2 122675 123703 complement fr 1 123711 125087 complement fr 2 125085 126857 complement fr 2 126658 126858 direct fr 1 126868 128652 complement fr 3 128646 130781 complement fr 2 131079 132716 direct fr 3 132777 133562 complement fr 2 133678 134199 direct fr 1 134414 135628 complement fr 1 134973 135392 direct fr 3 135755 136147 complement fr 1 136089 137324 complement fr 2 137518 138192 complement fr 3 138277 138435 direct fr 1 138325 138567 complement fr 3 138359 139810 direct fr 2 139495 139674 complement fr 3 139943 140707 complement fr 1 140963 141433 complement fr 1 141597 143081 direct fr 3 142490 142645 complement fr 1 143316 144116 complement fr 2 144202 145188 complement fr 3 145186 146199 complement fr 3 146197 147375 complement fr 3 147373 148509 complement fr 3 148507 149856 complement fr 3 149854 150144 complement fr 3 150462 151889 direct fr 3 150461 150676 complement fr 1 151950 152870 direct fr 3 152876 154303 direct fr 2 154267 154743 direct fr 1 154718 155164 direct fr 2 155162 155437 direct fr 2 155424 156860 direct fr 3 156940 157647 complement fr 3 157794 158639 direct fr 3 158776 158940 complement fr 3 158912 160273 complement fr 1 160554 162371 direct fr 3 162594 164894 direct fr 3 164908 165495 direct fr 1 165601 165972 direct fr 1 165941 166639 direct fr 2 166655 166951 complement fr 1 167043 168014 direct fr 3 168036 168785 complement fr 2 168986 170311 direct fr 2 170320 170868 direct fr 1 170962 173871 complement fr 3 174163 175146 direct fr 1 175759 178398 direct fr 1 178396 179115 direct fr 1 179099 179782 direct fr 2 179848 180633 complement fr 3 180782 180976 direct fr 2 180974 181546 direct fr 2 181586 183889 complement fr 1 184387 184614 direct fr 1 184629 184850 direct fr 3 185112 185348 direct fr 3 185351 185584 direct fr 2 185827 186987 direct fr 1 186985 187422 direct fr 1 188765 189886 complement fr 1 190149 190478 complement fr 2 190602 191396 complement fr 2 191582 191998 complement fr 1 POSSIBLE SEQUENCE FRAMESHIFTS DETECTED From To Frame Frame At base... ----- ----- ---------- 1 3 91200 +/- 11 bp (direct) -------------------- ABOUT THE MATRIX USED: Training set derived by GeneMarkS, 4.6a Fri Apr 20 15:28:46 2007