GENEMARK PREDICTIONS Sequence: gi|169302992|ref|NC_010403.1| Acinetobacter baumannii plasmid p4ABAYE, complete sequence Sequence file: NC_010403.fna Sequence length: 2726 GC Content: 37.60% Window length: 96 Window step: 12 Threshold value: 0.500 --- Matrix: Heuristic, GC = 38 Matrix author: Borodovsky Laboratory - Georgia Tech, School of Biology, Atlanta, GA, USA Matrix order: 2 List of Open reading frames predicted as CDSs, shown with alternate starts (regions from start to stop codon w/ coding function >0.50) Left Right DNA Coding Avg Start end end Strand Frame Prob Prob -------- -------- ---------- ----- ---- ---- 258 1286 direct fr 3 0.76 0.16 471 1286 direct fr 3 0.77 0.53 618 1286 direct fr 3 0.81 0.17 678 1286 direct fr 3 0.83 0.62 1877 2224 direct fr 2 0.59 0.17 1907 2224 direct fr 2 0.63 0.39 2108 2224 direct fr 2 0.63 0.45 2120 2224 direct fr 2 0.59 0.21 2178 2390 direct fr 3 0.52 0.39 2196 2390 direct fr 3 0.55 0.45 2217 2390 direct fr 3 0.62 0.21 2253 2390 direct fr 3 0.66 0.24 2387 2677 direct fr 2 0.68 0.63 List of Regions of interest (regions from stop to stop codon w/ a signal in between) LEnd REnd Strand Frame -------- -------- ----------- ----- 15 1286 direct fr 3 1312 1599 direct fr 1 1841 2224 direct fr 2 1947 2120 complement fr 2 2163 2390 direct fr 3 2372 2677 direct fr 2 -------------------- ABOUT THE MATRIX USED: For details on the model building procedure see: Besemer J. and Borodovsky M. "Heuristic approach to deriving models for gene finding" NAR, 1999, Vol. 27, No. 19, pp. 3911-3920