GENEMARK PREDICTIONS Sequence: gi|145597192|ref|NC_009378.1| Yersinia pestis Pestoides F plasmid MT, complete sequence Sequence file: NC_009378.fna Sequence length: 137010 GC Content: 52.01% Window length: 96 Window step: 12 Threshold value: 0.500 --- Matrix: - Matrix author: - Matrix order: 2 List of Open reading frames predicted as CDSs, shown with alternate starts (regions from start to stop codon w/ coding function >0.50) Left Right DNA Coding Avg Start end end Strand Frame Prob Prob -------- -------- ---------- ----- ---- ---- 87 1109 direct fr 3 0.71 .... 108 1109 direct fr 3 0.72 0.38 138 1109 direct fr 3 0.74 0.27 366 1109 direct fr 3 0.79 0.09 456 1109 direct fr 3 0.78 0.61 1106 1888 direct fr 2 0.70 0.78 1109 1888 direct fr 2 0.70 0.62 1112 1888 direct fr 2 0.70 0.38 1136 1888 direct fr 2 0.71 0.41 1226 1888 direct fr 2 0.74 0.76 1289 1888 direct fr 2 0.72 0.68 1301 1888 direct fr 2 0.71 0.30 2022 2630 complement fr 2 0.70 0.14 2022 2618 complement fr 2 0.72 0.69 2022 2591 complement fr 2 0.73 0.21 2022 2378 complement fr 2 0.75 0.26 2022 2228 complement fr 2 0.59 0.01 2022 2222 complement fr 2 0.59 0.01 5901 6533 complement fr 2 0.60 0.63 5901 6518 complement fr 2 0.61 0.43 5901 6479 complement fr 2 0.65 0.02 5901 6425 complement fr 2 0.71 0.01 5901 6047 complement fr 2 0.53 0.27 5901 6041 complement fr 2 0.53 0.25 6536 11167 complement fr 1 0.92 0.93 6536 11050 complement fr 1 0.93 0.03 6536 11002 complement fr 1 0.92 0.03 6536 10885 complement fr 1 0.92 0.01 11189 11776 complement fr 1 0.61 0.03 11189 11758 complement fr 1 0.64 0.04 11189 11740 complement fr 1 0.65 0.18 11189 11704 complement fr 1 0.67 0.83 11189 11641 complement fr 1 0.62 0.02 11189 11629 complement fr 1 0.61 0.02 11764 12561 complement fr 3 0.83 0.20 11764 12522 complement fr 3 0.85 0.95 11764 12462 complement fr 3 0.83 0.08 11764 12432 complement fr 3 0.82 0.41 12554 13285 complement fr 1 0.83 0.60 12554 13252 complement fr 1 0.87 0.42 12554 13186 complement fr 1 0.87 0.33 12554 13129 complement fr 1 0.86 0.11 13342 13677 complement fr 3 0.80 0.45 13342 13626 complement fr 3 0.77 0.30 13342 13614 complement fr 3 0.76 0.03 13719 18296 complement fr 2 0.96 0.95 13719 18062 complement fr 2 0.96 0.03 13719 17840 complement fr 2 0.96 0.06 13719 17831 complement fr 2 0.96 0.02 18304 18573 complement fr 3 0.72 0.22 18304 18537 complement fr 3 0.68 0.45 18304 18528 complement fr 3 0.67 0.69 18654 18971 complement fr 2 0.75 0.88 18654 18887 complement fr 2 0.82 0.05 18654 18854 complement fr 2 0.80 0.19 18654 18830 complement fr 2 0.77 0.07 19031 19777 complement fr 1 0.87 0.15 19031 19732 complement fr 1 0.92 0.69 19031 19570 complement fr 1 0.91 0.01 19031 19558 complement fr 1 0.90 0.04 19852 20235 complement fr 3 0.70 0.99 19852 20208 complement fr 3 0.71 0.38 19852 20157 complement fr 3 0.66 0.08 19852 20145 complement fr 3 0.66 0.46 20237 20710 complement fr 1 0.69 0.54 20237 20617 complement fr 1 0.70 0.60 20237 20575 complement fr 1 0.66 0.00 20701 21150 complement fr 3 0.61 0.48 20701 21045 complement fr 3 0.79 0.32 20701 20844 complement fr 3 0.58 0.05 21143 21976 complement fr 1 0.91 0.97 21143 21823 complement fr 1 0.94 0.09 21143 21805 complement fr 1 0.94 0.05 21143 21739 complement fr 1 0.94 0.03 21976 22422 complement fr 3 0.71 0.00 21976 22410 complement fr 3 0.73 0.00 21976 22275 complement fr 3 0.94 0.58 21976 22167 complement fr 3 0.94 0.03 21976 22161 complement fr 3 0.94 0.01 22454 23116 complement fr 1 0.77 0.75 22454 23101 complement fr 1 0.78 0.56 22454 23059 complement fr 1 0.81 0.19 22454 22921 complement fr 1 0.83 0.14 22454 22885 complement fr 1 0.83 0.43 23191 24066 complement fr 3 0.90 0.74 23191 24009 complement fr 3 0.93 0.02 23191 23958 complement fr 3 0.93 0.34 23191 23889 complement fr 3 0.92 0.01 24093 24989 complement fr 2 0.88 0.97 24093 24974 complement fr 2 0.89 0.98 24093 24968 complement fr 2 0.90 0.97 24093 24950 complement fr 2 0.91 0.04 24093 24809 complement fr 2 0.92 0.00 24093 24737 complement fr 2 0.91 0.00 25012 26601 complement fr 3 0.85 0.39 25012 26586 complement fr 3 0.86 0.35 25012 26553 complement fr 3 0.87 0.08 25012 26376 complement fr 3 0.87 0.01 25012 26250 complement fr 3 0.86 0.67 25012 26199 complement fr 3 0.86 0.02 26620 27876 complement fr 3 0.88 0.74 26620 27828 complement fr 3 0.90 0.00 26620 27792 complement fr 3 0.92 0.04 26620 27681 complement fr 3 0.93 0.07 26620 27603 complement fr 3 0.93 0.02 26620 27594 complement fr 3 0.93 0.01 27879 28520 complement fr 2 0.92 0.86 27879 28340 complement fr 2 0.91 0.62 27879 28331 complement fr 2 0.91 0.32 27879 28328 complement fr 2 0.91 0.09 28716 28982 complement fr 2 0.75 0.85 28716 28889 complement fr 2 0.81 0.58 28716 28859 complement fr 2 0.76 0.01 28716 28835 complement fr 2 0.71 0.03 28992 29891 complement fr 2 0.95 1.00 28992 29882 complement fr 2 0.95 0.99 28992 29813 complement fr 2 0.95 0.02 29888 30142 complement fr 1 0.66 0.91 29888 30010 complement fr 1 0.53 0.33 30135 30833 complement fr 2 0.84 0.00 30135 30773 complement fr 2 0.91 0.71 30135 30734 complement fr 2 0.92 0.31 30135 30722 complement fr 2 0.92 0.16 30770 31471 complement fr 1 0.83 0.03 30770 31438 complement fr 1 0.87 0.84 30770 31381 complement fr 1 0.88 0.13 30770 31225 complement fr 1 0.86 0.13 30770 31186 complement fr 1 0.85 0.00 31438 32136 complement fr 3 0.87 0.54 31438 32118 complement fr 3 0.88 0.98 31438 32112 complement fr 3 0.90 0.96 31438 32091 complement fr 3 0.91 0.62 31438 31914 complement fr 3 0.88 0.64 32205 33764 direct fr 3 0.81 0.27 32265 33764 direct fr 3 0.83 0.16 32286 33764 direct fr 3 0.82 0.09 32301 33764 direct fr 3 0.82 0.03 33767 34045 direct fr 2 0.80 0.30 33908 34045 direct fr 2 0.94 0.03 33914 34045 direct fr 2 0.93 0.01 33977 34045 direct fr 2 0.87 0.28 34105 34527 direct fr 1 0.63 0.03 34174 34527 direct fr 1 0.73 0.31 34249 34527 direct fr 1 0.84 0.36 34255 34527 direct fr 1 0.84 0.45 34270 34527 direct fr 1 0.83 0.04 34496 35059 direct fr 2 0.60 0.03 34532 35059 direct fr 2 0.63 0.85 34598 35059 direct fr 2 0.60 0.03 34613 35059 direct fr 2 0.59 0.00 34652 35059 direct fr 2 0.56 0.41 35383 36033 direct fr 1 0.63 0.83 35530 36033 direct fr 1 0.66 0.18 35668 36033 direct fr 1 0.61 0.06 35752 36033 direct fr 1 0.55 0.29 37705 38187 complement fr 3 0.76 0.01 37705 38139 complement fr 3 0.82 0.98 37705 38112 complement fr 3 0.81 0.72 37705 37854 complement fr 3 0.69 0.24 38393 38689 complement fr 1 0.82 0.80 38393 38680 complement fr 1 0.86 0.52 38393 38674 complement fr 1 0.88 0.64 38393 38590 complement fr 1 0.87 0.01 38393 38509 complement fr 1 0.88 0.29 39571 40326 complement fr 3 0.89 0.16 39571 40191 complement fr 3 0.88 0.02 39571 40170 complement fr 3 0.87 0.03 40525 41667 complement fr 3 0.86 0.33 40525 41616 complement fr 3 0.88 0.55 40525 41277 complement fr 3 0.88 0.15 40525 41274 complement fr 3 0.88 0.06 41775 44090 complement fr 2 0.93 0.22 41775 44024 complement fr 2 0.95 0.14 41775 44021 complement fr 2 0.95 0.10 41775 43973 complement fr 2 0.95 0.28 44168 44737 complement fr 1 0.82 0.70 44168 44719 complement fr 1 0.85 0.97 44168 44698 complement fr 1 0.87 0.63 44168 44623 complement fr 1 0.85 0.02 44168 44512 complement fr 1 0.81 0.05 44750 45319 complement fr 1 0.53 0.13 44750 45304 complement fr 1 0.54 0.25 44750 45163 complement fr 1 0.60 0.16 44750 45091 complement fr 1 0.53 0.27 44750 44917 complement fr 1 0.66 0.20 44930 45034 direct fr 2 0.53 0.47 44933 45034 direct fr 2 0.53 0.13 45486 47402 complement fr 2 0.90 0.77 45486 47369 complement fr 2 0.91 0.96 45486 47324 complement fr 2 0.91 0.03 45486 47255 complement fr 2 0.91 0.48 47632 48717 complement fr 3 0.87 0.00 47632 48699 complement fr 3 0.88 0.00 47632 48585 complement fr 3 0.92 0.02 47632 48561 complement fr 3 0.92 0.00 47632 48555 complement fr 3 0.92 0.00 49319 50155 direct fr 2 0.52 0.23 49325 50155 direct fr 2 0.52 0.27 49433 50155 direct fr 2 0.50 0.14 50515 50964 complement fr 3 0.58 0.50 50515 50784 complement fr 3 0.64 0.15 50515 50775 complement fr 3 0.64 0.02 50515 50739 complement fr 3 0.64 0.91 50515 50706 complement fr 3 0.61 0.14 51924 52988 direct fr 3 0.74 0.76 52047 52988 direct fr 3 0.76 0.21 52107 52988 direct fr 3 0.75 0.98 52116 52988 direct fr 3 0.75 0.99 53557 53769 complement fr 3 0.65 0.90 53557 53757 complement fr 3 0.69 0.98 53557 53691 complement fr 3 0.64 0.14 53769 54104 complement fr 2 0.80 0.96 53769 54029 complement fr 2 0.79 0.84 53769 54023 complement fr 2 0.78 0.81 54664 55074 complement fr 3 0.78 0.97 54664 55032 complement fr 3 0.85 0.02 54664 54960 complement fr 3 0.81 0.02 54664 54906 complement fr 3 0.78 0.25 55583 56413 complement fr 1 0.88 0.13 55583 56392 complement fr 1 0.91 0.59 55583 56368 complement fr 1 0.93 0.93 55583 56344 complement fr 1 0.93 0.32 55583 56212 complement fr 1 0.92 0.63 56708 57784 complement fr 1 0.93 0.99 56708 57571 complement fr 1 0.93 0.86 56708 57496 complement fr 1 0.92 0.65 57787 58053 complement fr 3 0.71 0.91 57787 58011 complement fr 3 0.78 0.13 57787 57969 complement fr 3 0.72 0.11 57787 57966 complement fr 3 0.72 0.17 58053 59048 complement fr 2 0.85 0.01 58053 58997 complement fr 2 0.89 0.62 58053 58982 complement fr 2 0.90 0.71 58053 58922 complement fr 2 0.92 0.26 58053 58895 complement fr 2 0.92 0.03 58053 58850 complement fr 2 0.92 0.32 59058 60137 complement fr 2 0.85 0.08 59058 60086 complement fr 2 0.88 0.72 59058 59945 complement fr 2 0.86 0.02 59058 59924 complement fr 2 0.86 0.13 60206 60679 complement fr 1 0.79 0.00 60206 60637 complement fr 1 0.85 0.99 60206 60610 complement fr 1 0.84 0.12 60206 60544 complement fr 1 0.82 0.10 61182 61745 direct fr 3 0.64 0.52 61775 62218 complement fr 1 0.85 1.00 61775 62200 complement fr 1 0.87 1.00 61775 62122 complement fr 1 0.86 0.07 61775 61912 complement fr 1 0.66 0.01 62215 65739 complement fr 3 0.92 0.84 62215 65727 complement fr 3 0.92 0.33 62215 65673 complement fr 3 0.93 0.41 62215 65622 complement fr 3 0.93 0.73 62215 65607 complement fr 3 0.93 0.03 65920 67155 complement fr 3 0.87 0.87 65920 67056 complement fr 3 0.94 0.98 65920 67011 complement fr 3 0.93 0.02 65920 67002 complement fr 3 0.93 0.00 67252 69618 complement fr 3 0.83 0.98 67252 69606 complement fr 3 0.83 0.91 67252 69594 complement fr 3 0.83 0.34 67252 69543 complement fr 3 0.83 0.05 70203 70589 direct fr 3 0.72 0.91 70419 70589 direct fr 3 0.58 0.44 70425 70589 direct fr 3 0.58 0.19 72445 72573 complement fr 3 0.54 0.16 78089 78394 complement fr 1 0.68 0.78 78089 78349 complement fr 1 0.72 0.36 78089 78304 complement fr 1 0.66 0.03 78915 80237 complement fr 2 0.87 0.76 78915 80189 complement fr 2 0.89 0.24 78915 80132 complement fr 2 0.89 0.01 78915 80120 complement fr 2 0.89 0.02 80272 80748 complement fr 3 0.73 0.01 80272 80673 complement fr 3 0.80 0.04 80272 80529 complement fr 3 0.85 0.30 80272 80526 complement fr 3 0.85 0.22 80830 81624 complement fr 3 0.85 0.99 80830 81495 complement fr 3 0.86 0.01 80830 81459 complement fr 3 0.86 0.53 80830 81390 complement fr 3 0.86 0.09 82633 83841 direct fr 1 0.88 0.99 82717 83841 direct fr 1 0.89 0.03 82939 83841 direct fr 1 0.89 0.17 82975 83841 direct fr 1 0.88 0.07 83962 86781 complement fr 3 0.62 0.96 83962 86712 complement fr 3 0.61 0.03 83962 86661 complement fr 3 0.61 0.05 86781 88154 complement fr 2 0.88 0.11 86781 88151 complement fr 2 0.88 0.03 86781 88112 complement fr 2 0.90 0.40 86781 88076 complement fr 2 0.90 0.46 86781 88064 complement fr 2 0.90 0.18 88151 88744 complement fr 1 0.73 0.09 88151 88735 complement fr 1 0.75 0.38 88151 88717 complement fr 1 0.76 0.91 88151 88714 complement fr 1 0.78 0.90 88151 88696 complement fr 1 0.78 0.21 88151 88678 complement fr 1 0.77 0.55 88686 88934 complement fr 2 0.55 0.45 88686 88898 complement fr 2 0.64 0.00 88686 88883 complement fr 2 0.68 0.01 88686 88823 complement fr 2 0.60 0.72 88951 89700 complement fr 3 0.87 0.14 88951 89541 complement fr 3 0.89 0.05 88951 89499 complement fr 3 0.88 0.06 88951 89472 complement fr 3 0.87 0.00 89951 91801 complement fr 1 0.75 0.28 89951 91783 complement fr 1 0.76 0.93 89951 91777 complement fr 1 0.76 0.99 89951 91756 complement fr 1 0.77 0.84 89951 91747 complement fr 1 0.77 0.53 89951 91594 complement fr 1 0.75 0.07 91798 92568 complement fr 3 0.78 0.00 91798 92427 complement fr 3 0.91 0.77 91798 92253 complement fr 3 0.89 0.04 91798 92109 complement fr 3 0.84 0.18 92444 93436 complement fr 1 0.78 0.96 92444 93430 complement fr 1 0.79 0.60 92444 93382 complement fr 1 0.80 0.32 92444 93313 complement fr 1 0.81 0.15 92444 93223 complement fr 1 0.87 0.25 92444 93169 complement fr 1 0.89 0.28 93433 94083 complement fr 3 0.83 0.98 93433 94080 complement fr 3 0.84 0.91 93433 94038 complement fr 3 0.84 0.04 93433 93996 complement fr 3 0.83 0.11 94080 94427 complement fr 2 0.81 0.88 94080 94331 complement fr 2 0.83 0.47 94080 94325 complement fr 2 0.83 0.21 94080 94313 complement fr 2 0.82 0.14 94424 97054 complement fr 1 0.95 0.82 94424 96994 complement fr 1 0.96 0.03 94424 96952 complement fr 1 0.96 0.03 94424 96928 complement fr 1 0.96 0.28 97047 97613 complement fr 2 0.69 0.07 97047 97610 complement fr 2 0.69 0.02 97047 97520 complement fr 2 0.74 0.11 97047 97505 complement fr 2 0.74 0.00 97047 97493 complement fr 2 0.73 0.66 97603 98106 complement fr 3 0.57 0.19 97603 98061 complement fr 3 0.62 0.01 97603 98034 complement fr 3 0.62 0.76 97603 98007 complement fr 3 0.63 0.29 97603 97929 complement fr 3 0.57 0.20 98524 99063 complement fr 3 0.71 0.93 98524 99051 complement fr 3 0.72 0.56 98524 98952 complement fr 3 0.69 0.79 98524 98838 complement fr 3 0.60 0.77 98524 98808 complement fr 3 0.57 0.12 99085 100488 complement fr 3 0.91 0.91 99085 100479 complement fr 3 0.91 0.98 99085 100461 complement fr 3 0.92 0.97 99085 100458 complement fr 3 0.92 0.91 99085 100425 complement fr 3 0.92 0.03 100466 101209 complement fr 1 0.80 0.97 100466 101170 complement fr 1 0.81 0.01 100466 101035 complement fr 1 0.79 0.27 100466 100972 complement fr 1 0.77 0.11 101196 101762 complement fr 2 0.83 0.03 101196 101705 complement fr 2 0.92 0.70 101196 101609 complement fr 2 0.93 0.08 101196 101585 complement fr 2 0.93 0.17 101196 101546 complement fr 2 0.92 0.02 102233 102589 complement fr 1 0.72 0.28 102233 102583 complement fr 1 0.74 0.36 102233 102574 complement fr 1 0.77 0.18 102233 102421 complement fr 1 0.70 0.10 102233 102370 complement fr 1 0.58 0.02 102793 104001 complement fr 3 0.88 0.99 102793 103917 complement fr 3 0.88 0.07 102793 103695 complement fr 3 0.88 0.18 102793 103659 complement fr 3 0.87 0.11 104025 106193 direct fr 3 0.87 0.00 104082 106193 direct fr 3 0.90 0.58 104094 106193 direct fr 3 0.90 0.26 104121 106193 direct fr 3 0.91 0.06 104196 106193 direct fr 3 0.91 0.17 104205 106193 direct fr 3 0.91 0.01 106193 111433 direct fr 2 0.97 0.66 106196 111433 direct fr 2 0.97 0.57 106277 111433 direct fr 2 0.98 0.02 106331 111433 direct fr 2 0.98 0.07 106466 111433 direct fr 2 0.98 0.19 111297 112172 direct fr 3 0.56 0.00 111321 112172 direct fr 3 0.58 0.00 111408 112172 direct fr 3 0.64 0.44 111435 112172 direct fr 3 0.67 0.72 111468 112172 direct fr 3 0.66 0.74 111471 112172 direct fr 3 0.66 0.58 112239 112958 direct fr 3 0.89 0.98 112362 112958 direct fr 3 0.88 0.01 112365 112958 direct fr 3 0.88 0.01 112368 112958 direct fr 3 0.88 0.01 112945 113742 direct fr 1 0.93 0.59 112951 113742 direct fr 1 0.93 0.49 112972 113742 direct fr 1 0.96 0.97 113002 113742 direct fr 1 0.97 0.39 113101 113742 direct fr 1 0.96 0.01 113161 113742 direct fr 1 0.96 0.22 113890 114444 direct fr 1 0.80 0.64 113920 114444 direct fr 1 0.85 0.06 114064 114444 direct fr 1 0.85 0.00 114091 114444 direct fr 1 0.84 0.02 114127 114444 direct fr 1 0.82 0.20 114842 115717 direct fr 2 0.87 0.56 114854 115717 direct fr 2 0.88 0.66 114962 115717 direct fr 2 0.90 0.01 115010 115717 direct fr 2 0.89 0.24 115046 115717 direct fr 2 0.89 0.47 116924 117946 direct fr 2 0.68 0.87 116963 117946 direct fr 2 0.69 0.05 117077 117946 direct fr 2 0.69 0.48 117146 117946 direct fr 2 0.70 0.09 118145 118462 complement fr 1 0.64 0.42 118145 118432 complement fr 1 0.62 0.36 123388 124368 complement fr 3 0.78 0.13 123388 124329 complement fr 3 0.81 0.01 123388 124245 complement fr 3 0.86 0.15 123388 124137 complement fr 3 0.85 0.05 123388 124116 complement fr 3 0.85 0.58 124395 124877 complement fr 2 0.52 0.14 124395 124859 complement fr 2 0.50 0.18 124395 124808 complement fr 2 0.53 0.00 124395 124730 complement fr 2 0.57 0.01 124395 124661 complement fr 2 0.54 0.68 125541 125768 complement fr 2 0.57 0.80 125541 125744 complement fr 2 0.63 0.78 127272 128243 direct fr 3 0.57 0.03 127332 128243 direct fr 3 0.60 0.83 127380 128243 direct fr 3 0.61 0.02 127407 128243 direct fr 3 0.62 0.46 127473 128243 direct fr 3 0.62 0.12 130181 130426 complement fr 1 0.54 0.02 130181 130381 complement fr 1 0.62 0.80 130181 130369 complement fr 1 0.64 0.77 130181 130297 complement fr 1 0.56 0.68 130882 131559 direct fr 1 0.62 0.02 130918 131559 direct fr 1 0.65 0.61 131053 131559 direct fr 1 0.72 0.62 131062 131559 direct fr 1 0.72 0.46 131083 131559 direct fr 1 0.70 0.13 131559 131780 direct fr 3 0.67 0.89 131595 131780 direct fr 3 0.75 0.22 131616 131780 direct fr 3 0.73 0.15 131646 131780 direct fr 3 0.67 0.27 131719 132210 direct fr 1 0.70 0.00 131761 132210 direct fr 1 0.77 0.01 131791 132210 direct fr 1 0.82 0.20 131905 132210 direct fr 1 0.87 0.02 131953 132210 direct fr 1 0.84 0.34 131992 132210 direct fr 1 0.82 0.03 132264 133043 direct fr 3 0.72 0.96 132294 133043 direct fr 3 0.74 0.36 132297 133043 direct fr 3 0.74 0.14 132480 133043 direct fr 3 0.82 0.07 132645 133043 direct fr 3 0.82 0.04 133442 133948 direct fr 2 0.83 0.32 133475 133948 direct fr 2 0.83 0.29 133607 133948 direct fr 2 0.87 0.16 133817 133948 direct fr 2 0.68 0.00 134661 134891 direct fr 3 0.82 0.97 134742 134891 direct fr 3 0.91 0.14 134802 134891 direct fr 3 0.85 0.51 134964 136973 direct fr 3 0.93 0.74 135114 136973 direct fr 3 0.94 0.03 135135 136973 direct fr 3 0.94 0.27 135228 136973 direct fr 3 0.94 0.59 135306 136973 direct fr 3 0.94 0.35 List of Regions of interest (regions from stop to stop codon w/ a signal in between) LEnd REnd Strand Frame -------- -------- ----------- ----- 39 1109 direct fr 3 1028 1888 direct fr 2 2022 2660 complement fr 2 2932 5871 complement fr 3 4814 5278 direct fr 2 5154 5375 direct fr 3 5901 6545 complement fr 2 6536 11188 complement fr 1 11189 11782 complement fr 1 11764 12597 complement fr 3 12554 13327 complement fr 1 13342 13725 complement fr 3 13719 18329 complement fr 2 18304 18669 complement fr 3 18654 18977 complement fr 2 19031 19807 complement fr 1 19852 20277 complement fr 3 20237 20812 complement fr 1 20701 21162 complement fr 3 21143 21982 complement fr 1 21976 22425 complement fr 3 22454 23128 complement fr 1 23191 24072 complement fr 3 24093 25007 complement fr 2 25012 26622 complement fr 3 26620 27894 complement fr 3 27767 27937 complement fr 1 27879 28574 complement fr 2 28716 28994 complement fr 2 28992 29972 complement fr 2 29888 30154 complement fr 1 30135 30905 complement fr 2 30770 31504 complement fr 1 31438 32154 complement fr 3 32124 33764 direct fr 3 33755 34045 direct fr 2 34078 34527 direct fr 1 34415 35059 direct fr 2 35335 36033 direct fr 1 36511 37029 direct fr 1 37301 37726 direct fr 2 37447 37902 direct fr 1 37705 38202 complement fr 3 38393 38800 complement fr 1 38874 39392 complement fr 2 39571 40371 complement fr 3 40369 40527 complement fr 3 40471 40635 direct fr 1 40525 41700 complement fr 3 41775 44096 complement fr 2 44168 44752 complement fr 1 44750 45550 complement fr 1 44861 45034 direct fr 2 45099 45719 direct fr 3 45486 47537 complement fr 2 47632 48738 complement fr 3 49118 50155 direct fr 2 50422 51030 direct fr 1 50515 51051 complement fr 3 50982 51191 complement fr 2 51906 52988 direct fr 3 52031 52423 complement fr 1 53557 53790 complement fr 3 53769 54167 complement fr 2 54321 54623 complement fr 2 54342 54572 direct fr 3 54664 55092 complement fr 3 55058 55432 complement fr 1 55583 56419 complement fr 1 56417 56674 complement fr 1 56708 57835 complement fr 1 57787 58068 complement fr 3 58053 59060 complement fr 2 59058 60191 complement fr 2 60206 60703 complement fr 1 61170 61745 direct fr 3 61775 62224 complement fr 1 62215 65748 complement fr 3 63364 64494 direct fr 1 64909 65394 direct fr 1 65714 65947 complement fr 1 65920 67209 complement fr 3 67252 69654 complement fr 3 68310 68717 complement fr 2 68914 69174 direct fr 1 70161 70589 direct fr 3 70584 71738 complement fr 2 71491 71727 direct fr 1 72445 72963 complement fr 3 75564 76394 complement fr 2 78089 78436 complement fr 1 78391 78561 complement fr 3 78540 78770 complement fr 2 78739 78924 complement fr 3 78915 80246 complement fr 2 80272 80832 complement fr 3 80830 81636 complement fr 3 82597 83841 direct fr 1 83962 86871 complement fr 3 84616 84945 direct fr 1 86781 88241 complement fr 2 88151 88801 complement fr 1 88686 89069 complement fr 2 88951 89733 complement fr 3 89396 89833 complement fr 1 89731 89967 complement fr 3 89951 91816 complement fr 1 91798 92583 complement fr 3 92444 93454 complement fr 1 93433 94113 complement fr 3 94080 94445 complement fr 2 94424 97087 complement fr 1 97047 97634 complement fr 2 97603 98154 complement fr 3 97991 98182 complement fr 1 98087 98491 direct fr 2 98524 99087 complement fr 3 99085 100533 complement fr 3 100367 101215 direct fr 2 100466 101233 complement fr 1 101196 101783 complement fr 2 101777 102103 complement fr 1 102233 102643 complement fr 1 102793 104064 complement fr 3 104001 106193 direct fr 3 104034 104630 complement fr 2 106172 111433 direct fr 2 111261 112172 direct fr 3 111285 112226 complement fr 2 112170 112958 direct fr 3 112918 113742 direct fr 1 113878 114444 direct fr 1 114839 115717 direct fr 2 115019 115876 complement fr 1 116876 117946 direct fr 2 118145 118507 complement fr 1 119298 119777 direct fr 3 120022 121791 complement fr 3 121863 122357 complement fr 2 123039 123365 direct fr 3 123388 124404 complement fr 3 124395 125021 complement fr 2 125215 125568 complement fr 3 125541 125795 complement fr 2 125971 127275 direct fr 1 127248 128243 direct fr 3 128619 130019 direct fr 3 129555 130076 complement fr 2 130181 130528 complement fr 1 130486 130698 complement fr 3 130626 130778 complement fr 2 130735 131298 complement fr 3 130864 131559 direct fr 1 131296 131718 complement fr 3 131532 131780 direct fr 3 131692 132210 direct fr 1 132240 133043 direct fr 3 133000 133182 complement fr 3 133217 133948 direct fr 2 134078 134467 complement fr 1 134242 134472 complement fr 3 134628 134891 direct fr 3 134889 136973 direct fr 3 POSSIBLE SEQUENCE FRAMESHIFTS DETECTED From To Frame Frame At base... ----- ----- ---------- 2 1 17676 +/- 11 bp (complement) 3 1 21972 +/- 11 bp (complement) -------------------- ABOUT THE MATRIX USED: Training set derived by GeneMarkS, 4.6a Wed Apr 25 11:16:36 2007