GENEMARK PREDICTIONS Sequence: gi|150378263|ref|NC_009622.1| Sinorhizobium medicae WSM419 plasmid pSMED03, complete sequence Sequence file: NC_009622.fna Sequence length: 219313 GC Content: 60.06% Window length: 96 Window step: 12 Threshold value: 0.500 --- Matrix: - Matrix author: - Matrix order: 2 List of Open reading frames predicted as CDSs, shown with alternate starts (regions from start to stop codon w/ coding function >0.50) Left Right DNA Coding Avg Start end end Strand Frame Prob Prob -------- -------- ---------- ----- ---- ---- 4357 5304 direct fr 1 0.77 0.16 4381 5304 direct fr 1 0.79 0.04 4438 5304 direct fr 1 0.81 0.56 4474 5304 direct fr 1 0.81 0.13 4525 5304 direct fr 1 0.80 0.18 6620 6973 direct fr 2 0.71 0.90 6719 6973 direct fr 2 0.72 0.03 6779 6973 direct fr 2 0.69 0.70 6812 6973 direct fr 2 0.70 0.68 6866 6973 direct fr 2 0.64 0.58 7027 8619 direct fr 1 0.73 0.60 7063 8619 direct fr 1 0.75 0.75 7426 8619 direct fr 1 0.71 0.71 7435 8619 direct fr 1 0.71 0.90 7471 8619 direct fr 1 0.73 0.17 7495 8619 direct fr 1 0.73 0.10 8597 10486 complement fr 1 0.65 0.08 8597 10459 complement fr 1 0.65 0.10 8597 10438 complement fr 1 0.66 0.30 8597 10426 complement fr 1 0.66 0.26 8597 10408 complement fr 1 0.66 0.75 10537 11547 complement fr 3 0.56 0.00 10537 11472 complement fr 3 0.60 0.04 10537 11442 complement fr 3 0.60 0.51 10537 11433 complement fr 3 0.61 0.52 10537 11370 complement fr 3 0.63 0.28 10537 11331 complement fr 3 0.64 0.59 10537 11316 complement fr 3 0.63 0.66 13165 13704 complement fr 3 0.71 0.10 13165 13689 complement fr 3 0.73 0.63 13165 13677 complement fr 3 0.72 0.34 13165 13674 complement fr 3 0.72 0.30 14345 14617 direct fr 2 0.52 0.77 15134 15307 direct fr 2 0.52 0.52 15209 15307 direct fr 2 0.54 0.02 15715 16215 complement fr 3 0.51 0.01 15715 16176 complement fr 3 0.56 0.85 15715 16038 complement fr 3 0.72 0.73 15715 15882 complement fr 3 0.65 0.14 15715 15843 complement fr 3 0.57 0.14 16538 17029 complement fr 1 0.67 0.10 16538 17023 complement fr 1 0.68 0.10 16538 16918 complement fr 1 0.76 0.23 16538 16846 complement fr 1 0.79 0.44 16538 16843 complement fr 1 0.79 0.34 17385 19199 direct fr 3 0.84 0.00 17445 19199 direct fr 3 0.87 0.01 17676 19199 direct fr 3 0.92 0.68 17706 19199 direct fr 3 0.92 0.01 17865 19199 direct fr 3 0.92 0.15 18895 20001 direct fr 1 0.59 0.00 18943 20001 direct fr 1 0.62 0.00 19036 20001 direct fr 1 0.68 0.00 19180 20001 direct fr 1 0.80 0.10 19225 20001 direct fr 1 0.84 0.77 19432 20001 direct fr 1 0.85 0.43 19504 20001 direct fr 1 0.84 0.20 19998 20555 direct fr 3 0.81 0.30 20034 20555 direct fr 3 0.82 0.33 20277 20555 direct fr 3 0.70 0.85 20352 20555 direct fr 3 0.61 0.25 20563 21567 direct fr 1 0.69 0.01 20683 21567 direct fr 1 0.73 0.05 20722 21567 direct fr 1 0.71 0.02 20806 21567 direct fr 1 0.69 0.01 21564 23471 direct fr 3 0.89 0.94 21603 23471 direct fr 3 0.91 0.13 21732 23471 direct fr 3 0.90 0.11 21762 23471 direct fr 3 0.90 0.41 23472 24068 direct fr 3 0.83 0.80 23532 24068 direct fr 3 0.90 0.01 23538 24068 direct fr 3 0.90 0.01 23565 24068 direct fr 3 0.90 0.86 24065 24415 direct fr 2 0.69 0.53 24155 24415 direct fr 2 0.66 0.00 24185 24415 direct fr 2 0.61 0.03 23956 25398 direct fr 1 0.53 0.00 23980 25398 direct fr 1 0.54 0.00 23992 25398 direct fr 1 0.54 0.00 24403 25398 direct fr 1 0.76 0.65 24412 25398 direct fr 1 0.77 0.88 24445 25398 direct fr 1 0.77 0.22 24556 25398 direct fr 1 0.75 0.01 24655 25398 direct fr 1 0.78 0.57 25671 25904 complement fr 2 0.62 0.65 25671 25865 complement fr 2 0.63 0.50 25790 26146 complement fr 1 0.65 0.06 26493 26882 complement fr 2 0.55 0.00 26493 26876 complement fr 2 0.57 0.01 26493 26834 complement fr 2 0.63 0.04 26493 26606 complement fr 2 0.57 0.15 28025 28642 complement fr 1 0.55 0.00 28025 28588 complement fr 1 0.59 0.23 28025 28486 complement fr 1 0.61 0.95 28025 28378 complement fr 1 0.51 0.16 28585 30174 complement fr 3 0.80 0.01 28585 30159 complement fr 3 0.80 0.01 28585 30018 complement fr 3 0.82 0.46 28585 29760 complement fr 3 0.88 0.12 28585 29688 complement fr 3 0.88 0.62 30208 30564 complement fr 3 0.76 0.78 30208 30540 complement fr 3 0.74 0.54 30208 30531 complement fr 3 0.74 0.66 30561 31043 complement fr 2 0.52 0.17 30561 31019 complement fr 2 0.55 0.58 30561 31007 complement fr 2 0.55 0.29 30561 30995 complement fr 2 0.55 0.56 30561 30983 complement fr 2 0.54 0.66 31251 31457 complement fr 2 0.50 0.04 31960 32124 direct fr 1 0.53 0.50 31817 31963 direct fr 2 0.64 0.08 32284 33642 direct fr 1 0.82 0.17 32353 33642 direct fr 1 0.86 0.41 32566 33642 direct fr 1 0.85 0.49 32644 33642 direct fr 1 0.83 0.07 33890 35791 complement fr 1 0.82 0.77 33890 35710 complement fr 1 0.83 0.03 33890 35608 complement fr 1 0.82 0.83 33890 35575 complement fr 1 0.82 0.04 42192 42287 complement fr 2 0.57 0.77 42622 43314 complement fr 3 0.67 0.03 42622 43071 complement fr 3 0.73 0.27 42622 43011 complement fr 3 0.70 0.54 42622 42882 complement fr 3 0.68 0.99 43947 44426 direct fr 3 0.68 0.14 44025 44426 direct fr 3 0.79 0.23 44085 44426 direct fr 3 0.87 0.87 44142 44426 direct fr 3 0.85 0.04 44199 44426 direct fr 3 0.81 0.46 44496 46922 direct fr 3 0.66 0.00 44535 46922 direct fr 3 0.66 0.06 44625 46922 direct fr 3 0.68 0.51 44658 46922 direct fr 3 0.69 0.70 44679 46922 direct fr 3 0.69 0.39 44733 46922 direct fr 3 0.69 0.55 48823 49623 direct fr 1 0.52 0.84 49145 49438 direct fr 2 0.53 0.92 49151 49438 direct fr 2 0.53 0.88 49199 49438 direct fr 2 0.57 0.00 50992 52086 direct fr 1 0.61 0.01 51076 52086 direct fr 1 0.66 0.51 51262 52086 direct fr 1 0.74 0.76 51379 52086 direct fr 1 0.77 0.16 51439 52086 direct fr 1 0.76 0.42 52819 53127 direct fr 1 0.51 0.41 53870 55441 complement fr 1 0.77 0.00 53870 55345 complement fr 1 0.82 0.72 53870 55225 complement fr 1 0.89 0.93 53870 55192 complement fr 1 0.89 0.21 53870 55165 complement fr 1 0.89 0.06 55682 56170 direct fr 2 0.50 0.22 56021 56170 direct fr 2 0.50 0.13 56190 56576 direct fr 3 0.65 0.58 56244 56576 direct fr 3 0.62 0.69 56328 56576 direct fr 3 0.53 0.45 56661 58760 complement fr 2 0.73 0.65 56661 58697 complement fr 2 0.74 0.27 56661 58550 complement fr 2 0.74 0.53 56661 58319 complement fr 2 0.75 0.36 58757 59785 complement fr 1 0.73 0.02 58757 59683 complement fr 1 0.79 0.78 58757 59680 complement fr 1 0.79 0.74 58757 59644 complement fr 1 0.78 0.03 59766 60977 complement fr 2 0.75 0.81 59766 60950 complement fr 2 0.76 0.30 59766 60887 complement fr 2 0.76 0.86 59766 60845 complement fr 2 0.76 0.18 60977 61786 complement fr 1 0.82 0.66 60977 61747 complement fr 1 0.85 0.12 60977 61744 complement fr 1 0.85 0.14 60977 61741 complement fr 1 0.85 0.06 60977 61687 complement fr 1 0.86 0.71 60977 61657 complement fr 1 0.85 0.13 60977 61654 complement fr 1 0.85 0.09 61783 62478 complement fr 3 0.66 0.13 61783 62364 complement fr 3 0.72 0.80 61783 62322 complement fr 3 0.71 0.31 61783 62319 complement fr 3 0.71 0.40 62504 63532 complement fr 1 0.62 0.79 62504 63439 complement fr 1 0.63 0.16 62504 63421 complement fr 1 0.62 0.01 62504 63406 complement fr 1 0.61 0.04 63765 64556 complement fr 2 0.68 0.01 63765 64481 complement fr 2 0.75 0.00 63765 64466 complement fr 2 0.76 0.01 63765 64436 complement fr 2 0.80 0.27 63765 64289 complement fr 2 0.86 0.13 63765 64256 complement fr 2 0.85 0.10 63765 64214 complement fr 2 0.85 0.46 64478 65581 complement fr 1 0.56 0.00 64478 65566 complement fr 1 0.57 0.02 64478 65560 complement fr 1 0.57 0.10 64478 65542 complement fr 1 0.58 0.22 64478 65494 complement fr 1 0.58 0.73 64478 65488 complement fr 1 0.58 0.52 64478 65473 complement fr 1 0.58 0.23 65563 68028 complement fr 3 0.73 0.74 65563 68022 complement fr 3 0.73 0.59 65563 67962 complement fr 3 0.74 0.07 68025 68324 complement fr 2 0.67 0.63 68025 68282 complement fr 2 0.75 0.49 68025 68246 complement fr 2 0.74 0.67 68025 68237 complement fr 2 0.73 0.36 68328 68666 complement fr 2 0.76 0.02 68328 68654 complement fr 2 0.78 0.33 68328 68603 complement fr 2 0.85 0.48 68328 68573 complement fr 2 0.84 0.13 68328 68522 complement fr 2 0.80 0.04 68678 69439 complement fr 1 0.59 0.43 68678 69418 complement fr 1 0.60 0.10 68678 69310 complement fr 1 0.70 0.05 68678 69220 complement fr 1 0.74 0.01 68678 69166 complement fr 1 0.73 0.73 68678 69055 complement fr 1 0.71 0.71 68678 69046 complement fr 1 0.73 0.22 68678 68977 complement fr 1 0.72 0.56 69911 70420 direct fr 2 0.57 0.29 69932 70420 direct fr 2 0.55 0.06 70390 70953 direct fr 1 0.65 0.00 70417 70953 direct fr 1 0.69 0.02 70642 70953 direct fr 1 0.78 0.54 70687 70953 direct fr 1 0.75 0.07 70690 70953 direct fr 1 0.75 0.03 70950 71651 direct fr 3 0.54 0.15 70986 71651 direct fr 3 0.57 0.49 71112 71651 direct fr 3 0.57 0.02 71388 71651 direct fr 3 0.76 0.23 71466 71651 direct fr 3 0.69 0.10 71760 72050 direct fr 3 0.58 0.77 71781 72050 direct fr 3 0.60 0.30 72544 72648 direct fr 1 0.52 0.05 73168 73503 complement fr 3 0.57 0.50 73168 73485 complement fr 3 0.61 0.88 73168 73473 complement fr 3 0.60 0.63 73168 73458 complement fr 3 0.61 0.41 76951 77409 direct fr 1 0.50 0.00 77053 77409 direct fr 1 0.65 0.02 77107 77409 direct fr 1 0.73 0.40 77308 77409 direct fr 1 0.53 0.12 77571 78572 complement fr 2 0.63 0.26 77571 78527 complement fr 2 0.65 0.26 77571 78503 complement fr 2 0.67 0.08 77571 78242 complement fr 2 0.58 0.15 77571 77948 complement fr 2 0.57 0.02 77571 77945 complement fr 2 0.57 0.01 78891 79649 direct fr 3 0.66 0.91 78912 79649 direct fr 3 0.67 0.69 78933 79649 direct fr 3 0.68 0.02 78978 79649 direct fr 3 0.66 0.17 78984 79649 direct fr 3 0.66 0.12 79636 81045 complement fr 3 0.85 0.58 79636 81030 complement fr 3 0.86 0.85 79636 80973 complement fr 3 0.87 0.38 79636 80925 complement fr 3 0.87 0.20 79636 80814 complement fr 3 0.86 0.69 83690 84022 complement fr 1 0.53 0.71 83690 83998 complement fr 1 0.57 0.97 83690 83959 complement fr 1 0.54 0.08 84145 85755 complement fr 3 0.76 0.01 84145 85629 complement fr 3 0.81 0.50 84145 85590 complement fr 3 0.80 0.50 84145 85581 complement fr 3 0.80 0.15 85819 86211 complement fr 3 0.75 0.45 85819 86115 complement fr 3 0.77 0.13 85819 86037 complement fr 3 0.69 0.60 85819 85989 complement fr 3 0.61 0.24 86239 88155 complement fr 3 0.81 0.07 86239 88128 complement fr 3 0.83 0.01 86239 88095 complement fr 3 0.84 0.48 86239 87987 complement fr 3 0.83 0.09 86239 87864 complement fr 3 0.83 0.41 86239 87828 complement fr 3 0.83 0.15 89331 89804 direct fr 3 0.73 0.48 89445 89804 direct fr 3 0.74 0.61 89469 89804 direct fr 3 0.74 0.88 89532 89804 direct fr 3 0.70 0.01 90446 90781 direct fr 2 0.51 0.35 91413 92630 direct fr 3 0.85 0.17 91437 92630 direct fr 3 0.87 0.01 91458 92630 direct fr 3 0.88 0.01 91506 92630 direct fr 3 0.92 0.90 91833 92630 direct fr 3 0.91 0.08 91839 92630 direct fr 3 0.91 0.01 91890 92630 direct fr 3 0.90 0.19 92635 93789 direct fr 1 0.82 0.07 92671 93789 direct fr 1 0.85 0.03 92797 93789 direct fr 1 0.89 0.03 93019 93789 direct fr 1 0.89 0.06 93025 93789 direct fr 1 0.89 0.12 93806 94582 direct fr 2 0.59 0.00 93833 94582 direct fr 2 0.61 0.33 93875 94582 direct fr 2 0.64 0.40 93902 94582 direct fr 2 0.65 0.71 93929 94582 direct fr 2 0.64 0.11 93983 94582 direct fr 2 0.63 0.06 95951 96244 direct fr 2 0.79 0.98 95960 96244 direct fr 2 0.82 0.99 96047 96244 direct fr 2 0.78 0.41 96059 96244 direct fr 2 0.76 0.19 96912 98021 direct fr 3 0.68 0.17 96936 98021 direct fr 3 0.69 0.59 96975 98021 direct fr 3 0.69 0.23 97074 98021 direct fr 3 0.68 0.20 98635 98916 complement fr 3 0.54 0.38 98635 98895 complement fr 3 0.56 0.94 98635 98883 complement fr 3 0.59 0.62 98635 98868 complement fr 3 0.61 0.06 99619 100026 complement fr 3 0.56 0.90 99619 99936 complement fr 3 0.51 0.46 100152 101174 direct fr 3 0.60 0.64 100167 101174 direct fr 3 0.59 0.85 100191 101174 direct fr 3 0.59 0.28 101590 102612 direct fr 1 0.59 0.01 101665 102612 direct fr 1 0.63 0.08 101767 102612 direct fr 1 0.64 0.03 101887 102612 direct fr 1 0.71 0.54 101947 102612 direct fr 1 0.70 0.03 102124 102612 direct fr 1 0.73 0.23 102609 102989 complement fr 2 0.55 0.22 103450 103734 complement fr 3 0.76 0.15 103450 103656 complement fr 3 0.83 0.18 103450 103644 complement fr 3 0.82 0.10 103450 103641 complement fr 3 0.82 0.10 103878 104897 complement fr 2 0.90 0.86 103878 104756 complement fr 2 0.92 0.15 103878 104720 complement fr 2 0.92 0.36 103878 104684 complement fr 2 0.92 0.03 105041 105517 direct fr 2 0.65 0.03 105143 105517 direct fr 2 0.74 0.00 105212 105517 direct fr 2 0.78 0.43 105254 105517 direct fr 2 0.77 0.06 105260 105517 direct fr 2 0.77 0.12 105269 105517 direct fr 2 0.77 0.22 105781 106134 complement fr 3 0.56 0.33 105781 106128 complement fr 3 0.58 0.20 105781 106065 complement fr 3 0.65 0.64 105781 106044 complement fr 3 0.66 0.61 105781 105990 complement fr 3 0.64 0.40 105781 105924 complement fr 3 0.56 0.16 106898 108136 direct fr 2 0.52 0.78 106928 108136 direct fr 2 0.53 0.32 106967 108136 direct fr 2 0.52 0.01 107081 108136 direct fr 2 0.53 0.61 108133 109065 direct fr 1 0.61 0.84 108289 109065 direct fr 1 0.57 0.62 108352 109065 direct fr 1 0.54 0.65 108535 109065 direct fr 1 0.55 0.03 108586 109065 direct fr 1 0.57 0.75 109062 109703 direct fr 3 0.63 0.59 109149 109703 direct fr 3 0.68 0.92 109176 109703 direct fr 3 0.68 0.05 109392 109703 direct fr 3 0.61 0.64 110521 111258 complement fr 3 0.51 0.64 110521 111222 complement fr 3 0.53 0.86 110521 111207 complement fr 3 0.53 0.37 110521 110997 complement fr 3 0.51 0.67 114142 114942 complement fr 3 0.60 0.34 114142 114870 complement fr 3 0.65 0.71 114142 114867 complement fr 3 0.65 0.59 114142 114810 complement fr 3 0.65 0.05 114142 114768 complement fr 3 0.65 0.13 114142 114669 complement fr 3 0.63 0.32 118254 144998 complement fr 2 0.86 0.28 118254 144434 complement fr 2 0.87 0.13 118254 144428 complement fr 2 0.87 0.09 118254 144194 complement fr 2 0.87 0.42 144995 171787 complement fr 1 0.88 0.02 144995 171772 complement fr 1 0.88 0.01 144995 171742 complement fr 1 0.88 0.38 144995 171595 complement fr 1 0.89 0.00 144995 171478 complement fr 1 0.89 0.02 144995 171262 complement fr 1 0.90 0.15 144995 171223 complement fr 1 0.90 0.21 144995 171163 complement fr 1 0.90 0.10 144995 171109 complement fr 1 0.90 0.54 144995 170659 complement fr 1 0.90 0.13 172148 173047 direct fr 2 0.64 0.65 172157 173047 direct fr 2 0.65 0.49 172160 173047 direct fr 2 0.65 0.34 172184 173047 direct fr 2 0.67 0.77 172241 173047 direct fr 2 0.69 0.33 172256 173047 direct fr 2 0.68 0.40 172259 173047 direct fr 2 0.68 0.23 173585 173995 complement fr 1 0.71 0.40 173585 173983 complement fr 1 0.73 0.75 173585 173953 complement fr 1 0.75 0.65 173585 173917 complement fr 1 0.73 0.03 173585 173881 complement fr 1 0.70 0.28 174125 175213 direct fr 2 0.56 0.01 174200 175213 direct fr 2 0.59 0.08 174302 175213 direct fr 2 0.60 0.03 174422 175213 direct fr 2 0.65 0.54 174482 175213 direct fr 2 0.66 0.03 174659 175213 direct fr 2 0.68 0.10 174704 175213 direct fr 2 0.65 0.43 174713 175213 direct fr 2 0.65 0.25 175249 175665 complement fr 3 0.60 0.21 175584 176012 complement fr 2 0.58 0.85 175584 175910 complement fr 2 0.57 0.21 176745 176987 direct fr 3 0.59 0.01 178952 180520 complement fr 1 0.67 0.10 178952 180304 complement fr 1 0.73 0.74 178952 180103 complement fr 1 0.74 0.20 178952 180094 complement fr 1 0.74 0.11 180587 180934 complement fr 1 0.57 0.06 180587 180913 complement fr 1 0.59 0.64 180587 180889 complement fr 1 0.63 0.44 180587 180880 complement fr 1 0.65 0.19 181476 181835 complement fr 2 0.61 0.42 181476 181787 complement fr 2 0.59 0.57 181830 181910 direct fr 3 0.56 0.71 182103 183473 direct fr 3 0.58 0.00 182247 183473 direct fr 3 0.65 0.05 182259 183473 direct fr 3 0.66 0.04 182313 183473 direct fr 3 0.68 0.07 182367 183473 direct fr 3 0.72 0.00 182472 183473 direct fr 3 0.77 0.03 182493 183473 direct fr 3 0.77 0.03 182553 183473 direct fr 3 0.81 0.26 182628 183473 direct fr 3 0.85 0.19 182631 183473 direct fr 3 0.85 0.18 183554 184492 direct fr 2 0.54 0.36 183695 184492 direct fr 2 0.55 0.83 183734 184492 direct fr 2 0.55 0.17 183746 184492 direct fr 2 0.54 0.05 184052 184492 direct fr 2 0.63 0.83 184647 185861 direct fr 3 0.50 0.23 184653 185861 direct fr 3 0.50 0.28 184662 185861 direct fr 3 0.51 0.65 184689 185861 direct fr 3 0.52 0.40 184788 185861 direct fr 3 0.52 0.43 184929 185861 direct fr 3 0.54 0.24 184968 185861 direct fr 3 0.55 0.29 186811 187032 complement fr 3 0.64 0.36 188046 188879 complement fr 2 0.78 0.13 188046 188804 complement fr 2 0.77 0.01 188046 188606 complement fr 2 0.76 0.50 189213 189563 direct fr 3 0.59 0.00 189216 189563 direct fr 3 0.59 0.00 189285 189563 direct fr 3 0.73 0.05 189297 189563 direct fr 3 0.76 0.91 189348 189563 direct fr 3 0.83 0.23 189360 189563 direct fr 3 0.82 0.12 189393 189563 direct fr 3 0.79 0.37 189762 189983 complement fr 2 0.66 0.08 189762 189926 complement fr 2 0.66 0.69 189762 189908 complement fr 2 0.61 0.14 190894 191226 direct fr 1 0.78 0.55 191238 191378 direct fr 3 0.66 0.73 191265 191378 direct fr 3 0.68 0.11 191286 191378 direct fr 3 0.60 0.19 191389 192570 direct fr 1 0.61 0.02 191398 192570 direct fr 1 0.61 0.02 191788 192570 direct fr 1 0.75 0.14 191866 192570 direct fr 1 0.79 0.79 191872 192570 direct fr 1 0.79 0.66 191881 192570 direct fr 1 0.79 0.45 193025 194950 direct fr 2 0.57 0.29 193085 194950 direct fr 2 0.58 0.53 193142 194950 direct fr 2 0.58 0.18 193232 194950 direct fr 2 0.58 0.12 194947 196500 direct fr 1 0.62 0.41 195169 196500 direct fr 1 0.71 0.57 195316 196500 direct fr 1 0.71 0.56 195337 196500 direct fr 1 0.71 0.35 195415 196500 direct fr 1 0.69 0.04 196491 196787 complement fr 2 0.54 0.45 196795 197724 complement fr 3 0.75 0.15 196795 197673 complement fr 3 0.79 0.24 196795 197622 complement fr 3 0.78 0.50 196795 197619 complement fr 3 0.78 0.34 197718 197984 complement fr 2 0.70 0.33 197718 197915 complement fr 2 0.65 0.09 197718 197843 complement fr 2 0.55 0.91 203403 203750 direct fr 3 0.57 0.05 203424 203750 direct fr 3 0.59 0.60 203448 203750 direct fr 3 0.63 0.39 203457 203750 direct fr 3 0.66 0.14 203821 205386 direct fr 1 0.69 0.20 204034 205386 direct fr 1 0.73 0.65 204235 205386 direct fr 1 0.74 0.33 204244 205386 direct fr 1 0.75 0.14 204247 205386 direct fr 1 0.75 0.04 204298 205386 direct fr 1 0.74 0.40 206345 206818 complement fr 1 0.70 0.19 206345 206803 complement fr 1 0.71 0.71 206345 206752 complement fr 1 0.74 0.24 206345 206719 complement fr 1 0.72 0.08 207573 208361 complement fr 2 0.69 0.02 207573 208307 complement fr 2 0.74 0.59 207573 208283 complement fr 2 0.75 0.99 207573 208280 complement fr 2 0.75 0.98 207573 208256 complement fr 2 0.74 0.54 208309 209808 complement fr 3 0.89 0.45 208309 209799 complement fr 3 0.89 0.63 208309 209763 complement fr 3 0.90 0.55 208309 209709 complement fr 3 0.90 0.64 208309 209706 complement fr 3 0.90 0.48 209954 211120 complement fr 1 0.51 0.61 211179 211634 complement fr 2 0.52 0.54 211179 211577 complement fr 2 0.58 0.03 211179 211355 complement fr 2 0.65 0.75 211179 211316 complement fr 2 0.57 0.13 211609 212925 complement fr 3 0.51 0.24 211609 212745 complement fr 3 0.53 0.02 211609 212646 complement fr 3 0.55 0.80 211609 212532 complement fr 3 0.50 0.63 List of Regions of interest (regions from stop to stop codon w/ a signal in between) LEnd REnd Strand Frame -------- -------- ----------- ----- 273 965 direct fr 3 747 989 complement fr 2 1595 2701 direct fr 2 2665 3741 direct fr 1 4246 5304 direct fr 1 4939 5421 complement fr 3 5208 5831 direct fr 3 5419 5661 complement fr 3 6124 6639 direct fr 1 6593 6973 direct fr 2 7003 8619 direct fr 1 7486 8664 complement fr 3 8597 10585 complement fr 1 10537 11574 complement fr 3 12118 12600 complement fr 3 12169 12789 direct fr 1 13165 13764 complement fr 3 14107 14394 complement fr 3 14117 14617 direct fr 2 14174 14623 complement fr 1 15116 15307 direct fr 2 15715 16221 complement fr 3 16538 17374 complement fr 1 17373 19199 direct fr 3 18883 20001 direct fr 1 19818 20555 direct fr 3 20467 21567 direct fr 1 21438 23471 direct fr 3 23210 24415 direct fr 2 23469 24068 direct fr 3 23941 25398 direct fr 1 25671 26291 complement fr 2 25790 26479 complement fr 1 26493 26906 complement fr 2 26620 26994 complement fr 3 27391 27705 complement fr 3 27965 28489 direct fr 2 28025 28720 complement fr 1 28585 30210 complement fr 3 30208 30657 complement fr 3 30561 31091 complement fr 2 31251 31505 complement fr 2 31581 31940 direct fr 3 31649 31963 direct fr 2 31738 32124 direct fr 1 31807 32259 complement fr 3 32272 33642 direct fr 1 33890 35809 complement fr 1 34112 35149 direct fr 2 36196 36597 direct fr 1 36540 36995 complement fr 2 37275 37808 direct fr 3 38245 38535 direct fr 1 38332 38832 complement fr 3 38835 39398 direct fr 3 39159 39446 complement fr 2 39464 39934 complement fr 1 40102 40425 direct fr 1 40514 41302 direct fr 2 41074 41580 complement fr 3 42192 42653 complement fr 2 42622 43341 complement fr 3 43905 44426 direct fr 3 44424 46922 direct fr 3 45096 45923 complement fr 2 46920 47138 direct fr 3 47196 47681 direct fr 3 47241 47567 complement fr 2 48021 49028 complement fr 2 48120 48599 direct fr 3 48673 49623 direct fr 1 48959 49438 direct fr 2 49501 49851 complement fr 3 49976 50506 direct fr 2 50427 51236 direct fr 3 50983 52086 direct fr 1 51920 52624 direct fr 2 52399 53127 direct fr 1 52621 53202 complement fr 3 53072 53803 direct fr 2 53418 53849 complement fr 2 53870 55486 complement fr 1 55607 56170 direct fr 2 55657 56052 direct fr 1 55755 56576 direct fr 3 56574 57110 direct fr 3 56661 58766 complement fr 2 58757 59800 complement fr 1 59766 61016 complement fr 2 60977 61858 complement fr 1 61783 62493 complement fr 3 62504 63550 complement fr 1 63548 63814 complement fr 1 63765 64559 complement fr 2 64478 65593 complement fr 1 65563 68319 complement fr 3 68025 68330 complement fr 2 68328 68750 complement fr 2 68678 69700 complement fr 1 69806 70420 direct fr 2 70357 70953 direct fr 1 70857 71651 direct fr 3 71649 72050 direct fr 3 72037 72648 direct fr 1 72603 73085 direct fr 3 73168 73536 complement fr 3 73981 74187 complement fr 3 74230 75255 complement fr 3 75230 76882 complement fr 1 76930 77409 direct fr 1 77571 78605 complement fr 2 77883 78320 direct fr 3 78756 79649 direct fr 3 79636 81063 complement fr 3 81081 81689 direct fr 3 81801 82226 complement fr 2 81983 82462 direct fr 2 82791 83204 direct fr 3 83128 83496 complement fr 3 83690 84031 complement fr 1 84145 85821 complement fr 3 85819 86241 complement fr 3 86110 86766 direct fr 1 86239 88191 complement fr 3 88562 88894 complement fr 1 88621 89343 direct fr 1 88929 89171 direct fr 3 89169 89804 direct fr 3 90013 90468 direct fr 1 90395 90781 direct fr 2 91392 92630 direct fr 3 92590 93789 direct fr 1 93695 94582 direct fr 2 95816 96244 direct fr 2 96801 98021 direct fr 3 98085 98324 complement fr 2 98635 98925 complement fr 3 99230 99784 complement fr 1 99619 100062 complement fr 3 100077 101174 direct fr 3 100662 100868 complement fr 2 101551 101910 complement fr 3 101584 102612 direct fr 1 102609 103010 complement fr 2 102943 103452 complement fr 3 103014 103205 complement fr 2 103450 103758 complement fr 3 103878 104903 complement fr 2 105032 105517 direct fr 2 105689 105886 direct fr 2 105781 106203 complement fr 3 106046 106264 complement fr 1 106202 106837 direct fr 2 106201 106452 complement fr 3 106835 108136 direct fr 2 107839 109065 direct fr 1 107903 108211 complement fr 1 108384 108641 complement fr 2 108843 109703 direct fr 3 109429 110028 direct fr 1 109799 110065 complement fr 1 109938 110255 complement fr 2 110215 110409 direct fr 1 110521 111273 complement fr 3 110872 111339 direct fr 1 111228 112826 complement fr 2 111271 112221 complement fr 3 111337 112083 direct fr 1 112914 113288 complement fr 2 113402 114277 complement fr 1 114142 114951 complement fr 3 115207 115998 complement fr 3 116722 118476 complement fr 3 118254 145010 complement fr 2 127944 128873 direct fr 3 131157 132086 direct fr 3 134370 135299 direct fr 3 137604 138533 direct fr 3 140817 141746 direct fr 3 144009 144902 direct fr 3 144995 171796 complement fr 1 170234 171169 direct fr 2 171558 172103 complement fr 2 171769 171999 complement fr 3 172142 173047 direct fr 2 172574 172957 complement fr 1 173011 173532 direct fr 1 173585 174061 complement fr 1 174086 174445 complement fr 1 174119 175213 direct fr 2 175249 175776 complement fr 3 175414 175713 direct fr 1 175584 176027 complement fr 2 176386 177081 direct fr 1 176616 176987 direct fr 3 176962 177330 complement fr 3 177317 177589 complement fr 1 177446 177781 direct fr 2 177901 178239 complement fr 3 178395 178649 complement fr 2 178644 179027 direct fr 3 178647 179009 complement fr 2 178952 180589 complement fr 1 179042 179467 direct fr 2 180587 180973 complement fr 1 180931 181317 complement fr 3 181353 181910 direct fr 3 181476 181865 complement fr 2 182028 183473 direct fr 3 182421 182714 complement fr 2 183461 184492 direct fr 2 184638 185861 direct fr 3 186811 187125 complement fr 3 187369 187899 complement fr 3 187693 188049 direct fr 1 188046 188942 complement fr 2 188614 189150 complement fr 3 189201 189563 direct fr 3 189538 189879 direct fr 1 189762 190208 complement fr 2 189852 190499 direct fr 3 190690 191226 direct fr 1 191208 191378 direct fr 3 191338 192570 direct fr 1 192989 194950 direct fr 2 193868 194083 complement fr 1 194395 195153 complement fr 3 194932 196500 direct fr 1 196491 196811 complement fr 2 196795 198033 complement fr 3 197718 198047 complement fr 2 197966 201754 direct fr 2 199436 200278 complement fr 1 200276 200989 complement fr 1 201862 202989 complement fr 3 203020 203406 direct fr 1 203364 203750 direct fr 3 203665 205386 direct fr 1 204871 205296 complement fr 3 205311 205694 complement fr 2 205329 205691 direct fr 3 205689 206840 direct fr 3 206345 206824 complement fr 1 207573 208367 complement fr 2 208309 209907 complement fr 3 209954 211207 complement fr 1 211179 211637 complement fr 2 211609 215130 complement fr 3 215571 216422 direct fr 3 216257 216952 complement fr 1 216407 217360 direct fr 2 218038 219183 complement fr 3 POSSIBLE SEQUENCE FRAMESHIFTS DETECTED From To Frame Frame At base... ----- ----- ---------- 1 2 25896 +/- 11 bp (complement) 3 2 26796 +/- 11 bp (complement) 3 2 31740 +/- 11 bp (direct) 1 2 49152 +/- 11 bp (direct) 2 1 49368 +/- 11 bp (direct) 2 1 55872 +/- 11 bp (direct) 3 2 103164 +/- 11 bp (complement) 2 3 112056 +/- 11 bp (complement) 3 2 171852 +/- 11 bp (complement) -------------------- ABOUT THE MATRIX USED: Training set derived by GeneMarkS, 4.6a Thu Jul 5 14:34:46 2007