GENEMARK PREDICTIONS Sequence: gi|153930630|ref|NC_009705.1| Yersinia pseudotuberculosis IP 31758 plasmid_153kb, complete sequence Sequence file: NC_009705.fna Sequence length: 153140 GC Content: 40.36% Window length: 96 Window step: 12 Threshold value: 0.500 --- Matrix: - Matrix author: - Matrix order: 2 List of Open reading frames predicted as CDSs, shown with alternate starts (regions from start to stop codon w/ coding function >0.50) Left Right DNA Coding Avg Start end end Strand Frame Prob Prob -------- -------- ---------- ----- ---- ---- 584 1870 direct fr 2 0.90 0.03 596 1870 direct fr 2 0.91 0.25 683 1870 direct fr 2 0.94 0.27 689 1870 direct fr 2 0.94 0.20 770 1870 direct fr 2 0.94 0.11 1964 8365 direct fr 2 0.89 0.68 2027 8365 direct fr 2 0.90 0.30 2162 8365 direct fr 2 0.89 0.02 2306 8365 direct fr 2 0.90 0.07 8462 8983 direct fr 2 0.62 0.26 8570 8983 direct fr 2 0.63 0.35 8657 8983 direct fr 2 0.54 0.00 8970 9767 direct fr 3 0.72 0.12 9408 9767 direct fr 3 0.82 0.34 9618 9767 direct fr 3 0.62 0.06 9886 10539 direct fr 1 0.71 0.31 9907 10539 direct fr 1 0.70 0.27 10009 10539 direct fr 1 0.64 0.10 10542 11687 direct fr 3 0.78 0.16 10608 11687 direct fr 3 0.81 0.39 10731 11687 direct fr 3 0.86 0.63 10752 11687 direct fr 3 0.86 0.21 10764 11687 direct fr 3 0.86 0.18 11698 12858 direct fr 1 0.86 0.62 11710 12858 direct fr 1 0.87 0.38 11767 12858 direct fr 1 0.91 0.11 11992 12858 direct fr 1 0.93 0.23 12175 12858 direct fr 1 0.91 0.08 12340 12858 direct fr 1 0.89 0.10 12866 13993 direct fr 2 0.86 0.20 12938 13993 direct fr 2 0.89 0.29 13037 13993 direct fr 2 0.89 0.34 13106 13993 direct fr 2 0.90 0.52 13151 13993 direct fr 2 0.90 0.17 14008 15687 direct fr 1 0.93 0.93 14296 15687 direct fr 1 0.93 0.06 14299 15687 direct fr 1 0.93 0.09 14497 15687 direct fr 1 0.92 0.01 16497 16976 complement fr 2 0.73 0.35 16497 16859 complement fr 2 0.74 0.08 16497 16826 complement fr 2 0.73 0.09 17153 17611 direct fr 2 0.61 0.15 17171 17611 direct fr 2 0.63 0.20 17174 17611 direct fr 2 0.65 0.31 17195 17611 direct fr 2 0.66 0.50 17198 17611 direct fr 2 0.66 0.66 17270 17611 direct fr 2 0.60 0.00 17306 17611 direct fr 2 0.63 0.05 17348 17611 direct fr 2 0.70 0.54 17432 17611 direct fr 2 0.69 0.13 17719 18915 direct fr 1 0.69 0.03 17749 18915 direct fr 1 0.71 0.57 17815 18915 direct fr 1 0.73 0.65 17986 18915 direct fr 1 0.72 0.23 18931 20625 direct fr 1 0.79 0.09 18964 20625 direct fr 1 0.81 0.28 19015 20625 direct fr 1 0.82 0.70 19054 20625 direct fr 1 0.82 0.01 19210 20625 direct fr 1 0.80 0.51 19575 19715 complement fr 2 0.52 0.62 20644 22251 direct fr 1 0.83 0.17 20833 22251 direct fr 1 0.84 0.76 20869 22251 direct fr 1 0.84 0.24 20950 22251 direct fr 1 0.83 0.16 22238 22774 direct fr 2 0.68 0.20 22301 22774 direct fr 2 0.76 0.31 22337 22774 direct fr 2 0.80 0.55 22388 22774 direct fr 2 0.80 0.36 22475 22774 direct fr 2 0.75 0.01 22478 22774 direct fr 2 0.75 0.02 22802 24301 direct fr 2 0.82 0.68 22892 24301 direct fr 2 0.82 0.18 22901 24301 direct fr 2 0.82 0.49 23144 24301 direct fr 2 0.80 0.07 24350 25429 direct fr 2 0.61 0.46 24452 25429 direct fr 2 0.63 0.61 24692 25429 direct fr 2 0.57 0.02 24752 25429 direct fr 2 0.56 0.22 24803 25429 direct fr 2 0.59 0.04 25013 25429 direct fr 2 0.69 0.07 25052 25429 direct fr 2 0.74 0.46 25055 25429 direct fr 2 0.74 0.45 25073 25429 direct fr 2 0.79 0.38 25121 25429 direct fr 2 0.85 0.43 25453 25980 direct fr 1 0.83 0.17 25519 25980 direct fr 1 0.85 0.64 25534 25980 direct fr 1 0.85 0.50 25720 25980 direct fr 1 0.77 0.39 26006 26974 direct fr 2 0.83 0.01 26039 26974 direct fr 2 0.85 0.95 26225 26974 direct fr 2 0.87 0.05 26261 26974 direct fr 2 0.87 0.25 26291 26974 direct fr 2 0.87 0.47 26993 28279 direct fr 2 0.78 0.35 27242 28279 direct fr 2 0.80 0.36 27263 28279 direct fr 2 0.80 0.23 27617 28279 direct fr 2 0.70 0.64 28164 28283 direct fr 3 0.51 0.06 28990 30117 direct fr 1 0.65 0.27 29074 30117 direct fr 1 0.68 0.19 29350 30117 direct fr 1 0.68 0.34 29446 30117 direct fr 1 0.68 0.27 29503 30117 direct fr 1 0.66 0.48 31244 32746 complement fr 1 0.86 0.66 31244 32644 complement fr 1 0.87 0.27 31244 32638 complement fr 1 0.87 0.40 31244 32602 complement fr 1 0.87 0.02 33017 33907 direct fr 2 0.71 0.01 33092 33907 direct fr 2 0.69 0.70 33134 33907 direct fr 2 0.69 0.08 33233 33907 direct fr 2 0.70 0.43 33907 34389 direct fr 1 0.67 0.78 34150 34389 direct fr 1 0.65 0.19 34165 34389 direct fr 1 0.65 0.73 34168 34389 direct fr 1 0.65 0.68 34177 34389 direct fr 1 0.67 0.87 34389 35030 direct fr 3 0.73 0.91 34479 35030 direct fr 3 0.78 0.15 34557 35030 direct fr 3 0.75 0.19 34674 35030 direct fr 3 0.68 0.05 35096 35545 direct fr 2 0.58 0.38 35195 35545 direct fr 2 0.64 0.39 35204 35545 direct fr 2 0.65 0.48 35342 35545 direct fr 2 0.61 0.28 35378 35545 direct fr 2 0.68 0.17 35405 35545 direct fr 2 0.71 0.20 35580 35987 direct fr 3 0.72 0.47 35679 35987 direct fr 3 0.83 0.03 35826 35987 direct fr 3 0.70 0.54 35996 37555 direct fr 2 0.81 0.80 36224 37555 direct fr 2 0.80 0.15 36272 37555 direct fr 2 0.79 0.01 36287 37555 direct fr 2 0.79 0.00 37485 37994 direct fr 3 0.59 0.00 37527 37994 direct fr 3 0.65 0.07 37593 37994 direct fr 3 0.68 0.21 37701 37994 direct fr 3 0.57 0.06 38031 40478 direct fr 3 0.83 0.20 38175 40478 direct fr 3 0.84 0.11 38190 40478 direct fr 3 0.84 0.27 38301 40478 direct fr 3 0.85 0.71 40519 40713 direct fr 1 0.71 0.30 40537 40713 direct fr 1 0.72 0.51 40729 42777 direct fr 1 0.90 0.95 40861 42777 direct fr 1 0.90 0.36 40867 42777 direct fr 1 0.90 0.49 40969 42777 direct fr 1 0.90 0.26 42851 43351 direct fr 2 0.81 0.75 43169 43351 direct fr 2 0.74 0.17 43226 43351 direct fr 2 0.63 0.14 44144 44341 complement fr 1 0.62 0.51 44144 44323 complement fr 1 0.65 0.73 44144 44260 complement fr 1 0.54 0.13 44523 45080 direct fr 3 0.79 0.47 44634 45080 direct fr 3 0.82 0.73 44643 45080 direct fr 3 0.82 0.41 44667 45080 direct fr 3 0.81 0.01 44989 45666 direct fr 1 0.66 0.02 45001 45666 direct fr 1 0.68 0.02 45013 45666 direct fr 1 0.69 0.12 45025 45666 direct fr 1 0.70 0.09 45061 45666 direct fr 1 0.72 0.62 45070 45666 direct fr 1 0.72 0.66 45124 45666 direct fr 1 0.70 0.33 45584 46153 direct fr 2 0.70 0.01 45632 46153 direct fr 2 0.76 0.17 45659 46153 direct fr 2 0.79 0.54 45812 46153 direct fr 2 0.80 0.02 45836 46153 direct fr 2 0.78 0.01 46134 46808 direct fr 3 0.85 0.95 46146 46808 direct fr 3 0.86 0.93 46500 46808 direct fr 3 0.85 0.02 46527 46808 direct fr 3 0.83 0.40 46650 46808 direct fr 3 0.72 0.07 46810 47070 direct fr 1 0.64 0.25 46903 47070 direct fr 1 0.72 0.56 47077 47271 direct fr 1 0.55 0.89 47080 47271 direct fr 1 0.55 0.96 47134 47271 direct fr 1 0.70 0.00 47521 47799 direct fr 1 0.54 0.36 47677 47799 direct fr 1 0.55 0.42 47680 47799 direct fr 1 0.55 0.39 47918 48322 direct fr 2 0.60 0.38 47939 48322 direct fr 2 0.62 0.52 47948 48322 direct fr 2 0.64 0.95 48053 48322 direct fr 2 0.59 0.25 48158 48322 direct fr 2 0.57 0.67 49007 49552 complement fr 1 0.71 0.01 49007 49438 complement fr 1 0.84 0.04 49007 49432 complement fr 1 0.84 0.03 49007 49396 complement fr 1 0.83 0.43 49728 49934 direct fr 3 0.64 0.03 49764 49934 direct fr 3 0.73 0.71 49845 49934 direct fr 3 0.61 0.17 50039 50317 complement fr 1 0.54 0.32 50039 50263 complement fr 1 0.63 0.15 50039 50230 complement fr 1 0.62 0.84 50039 50197 complement fr 1 0.57 0.21 50797 51018 direct fr 1 0.59 0.02 51008 51259 direct fr 2 0.75 0.67 51029 51259 direct fr 2 0.74 0.34 51053 51259 direct fr 2 0.72 0.11 51288 52031 direct fr 3 0.64 0.08 51291 52031 direct fr 3 0.65 0.08 51396 52031 direct fr 3 0.71 0.63 51447 52031 direct fr 3 0.68 0.06 51492 52031 direct fr 3 0.66 0.02 53809 54195 complement fr 3 0.56 0.02 53809 54090 complement fr 3 0.67 0.11 53809 54015 complement fr 3 0.56 0.03 54197 55375 complement fr 1 0.65 0.09 54197 55294 complement fr 1 0.69 0.51 54197 55264 complement fr 1 0.70 0.21 54197 55171 complement fr 1 0.69 0.01 54197 55165 complement fr 1 0.69 0.00 55378 55914 complement fr 3 0.51 0.18 55378 55899 complement fr 3 0.52 0.33 55378 55752 complement fr 3 0.55 0.52 55378 55710 complement fr 3 0.51 0.00 55378 55512 complement fr 3 0.55 0.12 56517 56867 direct fr 3 0.55 0.85 56831 58135 direct fr 2 0.72 0.48 56870 58135 direct fr 2 0.75 0.23 56897 58135 direct fr 2 0.74 0.07 56948 58135 direct fr 2 0.74 0.04 58370 58570 direct fr 2 0.60 0.24 58397 58570 direct fr 2 0.68 0.98 58563 59291 direct fr 3 0.77 0.08 58677 59291 direct fr 3 0.81 0.07 58851 59291 direct fr 3 0.82 0.55 58878 59291 direct fr 3 0.82 0.43 60649 61206 direct fr 1 0.78 0.24 60862 61206 direct fr 1 0.71 0.28 60874 61206 direct fr 1 0.70 0.03 60985 61206 direct fr 1 0.71 0.12 61045 61206 direct fr 1 0.69 0.26 61336 62319 direct fr 1 0.55 0.88 61471 62319 direct fr 1 0.54 0.17 61696 62319 direct fr 1 0.58 0.13 62191 62319 direct fr 1 0.62 0.43 62224 62319 direct fr 1 0.52 0.36 62384 63076 direct fr 2 0.52 0.08 62387 63076 direct fr 2 0.52 0.06 62756 63076 direct fr 2 0.64 0.14 62849 63076 direct fr 2 0.56 0.00 63339 63545 direct fr 3 0.64 0.04 63342 63545 direct fr 3 0.64 0.05 63363 63545 direct fr 3 0.72 0.10 63387 63545 direct fr 3 0.70 0.67 64479 65165 direct fr 3 0.82 0.24 64617 65165 direct fr 3 0.83 0.14 64683 65165 direct fr 3 0.85 0.31 64734 65165 direct fr 3 0.83 0.16 65845 66474 direct fr 1 0.68 0.23 65878 66474 direct fr 1 0.71 0.10 65926 66474 direct fr 1 0.74 0.20 66049 66474 direct fr 1 0.83 0.48 66289 66474 direct fr 1 0.70 0.14 66487 68148 direct fr 1 0.70 0.34 66499 68148 direct fr 1 0.70 0.18 66628 68148 direct fr 1 0.73 0.06 66673 68148 direct fr 1 0.75 0.11 66715 68148 direct fr 1 0.77 0.43 66877 68148 direct fr 1 0.81 0.26 66970 68148 direct fr 1 0.80 0.09 68168 69187 direct fr 2 0.63 0.35 68249 69187 direct fr 2 0.67 0.07 68282 69187 direct fr 2 0.67 0.07 68300 69187 direct fr 2 0.68 0.05 68315 69187 direct fr 2 0.69 0.64 68348 69187 direct fr 2 0.68 0.72 68405 69187 direct fr 2 0.66 0.37 69197 71044 direct fr 2 0.77 0.29 69668 71044 direct fr 2 0.80 0.74 69689 71044 direct fr 2 0.80 0.07 69692 71044 direct fr 2 0.80 0.02 71244 72476 direct fr 3 0.52 0.20 71319 72476 direct fr 3 0.55 0.02 71331 72476 direct fr 3 0.55 0.00 71343 72476 direct fr 3 0.55 0.07 71355 72476 direct fr 3 0.54 0.12 72485 73063 direct fr 2 0.67 0.20 72491 73063 direct fr 2 0.67 0.38 72530 73063 direct fr 2 0.71 0.71 72731 73063 direct fr 2 0.61 0.08 73023 73697 direct fr 3 0.74 0.37 73026 73697 direct fr 3 0.74 0.44 73038 73697 direct fr 3 0.76 0.90 73053 73697 direct fr 3 0.76 0.81 73065 73697 direct fr 3 0.76 0.53 73161 73697 direct fr 3 0.73 0.10 73968 74153 direct fr 3 0.55 0.05 73983 74153 direct fr 3 0.58 0.55 74001 74153 direct fr 3 0.60 0.29 74150 74932 complement fr 1 0.53 0.02 74150 74833 complement fr 1 0.60 0.06 74150 74830 complement fr 1 0.60 0.04 74150 74806 complement fr 1 0.63 0.01 74150 74758 complement fr 1 0.67 0.00 74150 74722 complement fr 1 0.72 0.71 74150 74650 complement fr 1 0.71 0.02 74150 74602 complement fr 1 0.72 0.15 74150 74395 complement fr 1 0.67 0.25 74150 74356 complement fr 1 0.62 0.10 75564 76358 complement fr 2 0.60 0.52 75564 76310 complement fr 2 0.62 0.35 75564 76148 complement fr 2 0.64 0.12 75564 75959 complement fr 2 0.67 0.24 76523 77920 complement fr 1 0.75 0.01 76523 77806 complement fr 1 0.80 0.01 76523 77776 complement fr 1 0.82 0.00 76523 77746 complement fr 1 0.84 0.06 76523 77734 complement fr 1 0.85 0.06 76523 77671 complement fr 1 0.89 0.56 76523 77659 complement fr 1 0.90 0.92 76523 77647 complement fr 1 0.90 0.97 76523 77593 complement fr 1 0.90 0.06 77972 78115 direct fr 2 0.53 0.64 78329 79402 complement fr 1 0.84 0.23 78329 79279 complement fr 1 0.88 0.29 78329 79261 complement fr 1 0.88 0.20 78329 79051 complement fr 1 0.86 0.10 80522 80860 direct fr 2 0.55 0.02 80630 80860 direct fr 2 0.69 0.04 80738 80860 direct fr 2 0.63 0.62 80774 80860 direct fr 2 0.51 0.44 81046 81588 complement fr 3 0.56 0.00 81046 81501 complement fr 3 0.62 0.16 81709 82041 complement fr 3 0.62 0.75 81709 82005 complement fr 3 0.68 0.59 81709 81906 complement fr 3 0.65 0.21 81709 81891 complement fr 3 0.64 0.72 82045 82290 complement fr 3 0.66 0.24 82045 82227 complement fr 3 0.69 0.66 82045 82185 complement fr 3 0.59 0.07 82045 82158 complement fr 3 0.52 0.00 82551 83390 complement fr 2 0.71 0.60 82551 83279 complement fr 2 0.74 0.62 82551 83162 complement fr 2 0.74 0.38 82551 83156 complement fr 2 0.74 0.44 82551 83084 complement fr 2 0.78 0.21 82551 83039 complement fr 2 0.77 0.44 83794 84912 complement fr 3 0.70 0.21 83794 84723 complement fr 3 0.70 0.49 83794 84720 complement fr 3 0.69 0.51 83794 84711 complement fr 3 0.69 0.44 85320 85781 direct fr 3 0.52 0.06 85792 85902 direct fr 1 0.61 0.50 85822 85902 direct fr 1 0.52 0.12 86182 87726 complement fr 3 0.65 0.49 86182 87540 complement fr 3 0.71 0.03 86182 87519 complement fr 3 0.72 0.00 86182 87372 complement fr 3 0.71 0.18 86182 87063 complement fr 3 0.62 0.02 86182 86661 complement fr 3 0.56 0.06 87771 88010 complement fr 2 0.53 0.21 88093 89100 complement fr 3 0.68 0.70 88093 88854 complement fr 3 0.68 0.06 88093 88620 complement fr 3 0.68 0.57 88093 88599 complement fr 3 0.67 0.06 89918 91330 complement fr 1 0.79 0.34 89918 91309 complement fr 1 0.80 0.64 89918 91264 complement fr 1 0.80 0.33 89918 91234 complement fr 1 0.80 0.06 89918 91228 complement fr 1 0.80 0.06 91343 91945 complement fr 1 0.67 0.29 91343 91930 complement fr 1 0.70 0.66 91343 91876 complement fr 1 0.72 0.05 91343 91840 complement fr 1 0.71 0.40 91343 91792 complement fr 1 0.70 0.12 92100 92549 direct fr 3 0.77 0.41 92133 92549 direct fr 3 0.76 0.07 92151 92549 direct fr 3 0.74 0.04 92658 92813 complement fr 2 0.53 0.48 92987 93670 direct fr 2 0.77 0.75 93095 93670 direct fr 2 0.79 0.38 93209 93670 direct fr 2 0.80 0.21 93311 93670 direct fr 2 0.86 0.23 93811 94704 complement fr 3 0.60 0.12 93811 94437 complement fr 3 0.51 0.53 93811 94122 complement fr 3 0.57 0.37 93811 94095 complement fr 3 0.57 0.27 94949 95170 complement fr 1 0.59 0.23 94949 95086 complement fr 1 0.58 0.43 95269 95619 complement fr 3 0.69 0.81 95269 95568 complement fr 3 0.76 0.04 95269 95565 complement fr 3 0.76 0.04 95269 95445 complement fr 3 0.62 0.22 95833 96606 direct fr 1 0.51 0.01 95878 96606 direct fr 1 0.54 0.45 95929 96606 direct fr 1 0.57 0.16 95959 96606 direct fr 1 0.56 0.39 96631 96984 direct fr 1 0.57 0.56 96748 96984 direct fr 1 0.72 0.32 96781 96984 direct fr 1 0.72 0.20 96802 96984 direct fr 1 0.72 0.36 97034 97675 direct fr 2 0.81 0.29 97497 98189 direct fr 3 0.59 0.02 97509 98189 direct fr 3 0.60 0.01 97524 98189 direct fr 3 0.61 0.01 97554 98189 direct fr 3 0.64 0.13 97593 98189 direct fr 3 0.68 0.00 97665 98189 direct fr 3 0.74 0.43 97818 98189 direct fr 3 0.68 0.66 98302 98637 direct fr 1 0.51 0.12 98473 98637 direct fr 1 0.59 0.34 98488 98637 direct fr 1 0.59 0.22 98637 99281 direct fr 3 0.79 0.70 98769 99281 direct fr 3 0.85 0.53 98964 99281 direct fr 3 0.78 0.74 99441 99839 direct fr 3 0.51 0.12 99447 99839 direct fr 3 0.53 0.03 99453 99839 direct fr 3 0.53 0.03 99519 99839 direct fr 3 0.64 0.07 99534 99839 direct fr 3 0.66 0.05 99564 99839 direct fr 3 0.71 0.72 99600 99839 direct fr 3 0.70 0.43 99669 99839 direct fr 3 0.61 0.25 100218 101069 complement fr 2 0.76 0.01 100218 100832 complement fr 2 0.86 0.49 100218 100820 complement fr 2 0.85 0.31 100218 100532 complement fr 2 0.79 0.10 101361 102191 complement fr 2 0.63 0.39 101361 101912 complement fr 2 0.61 0.59 101361 101891 complement fr 2 0.59 0.18 101361 101732 complement fr 2 0.53 0.08 101361 101609 complement fr 2 0.54 0.03 102713 103843 direct fr 2 0.71 0.25 102806 103843 direct fr 2 0.73 0.21 102809 103843 direct fr 2 0.73 0.07 103271 103843 direct fr 2 0.70 0.08 103301 103843 direct fr 2 0.73 0.35 104452 105609 complement fr 3 0.88 0.38 104452 105207 complement fr 3 0.90 0.00 104452 105138 complement fr 3 0.90 0.57 104452 105135 complement fr 3 0.90 0.64 106431 107120 direct fr 3 0.68 0.20 106464 107120 direct fr 3 0.70 0.62 106506 107120 direct fr 3 0.70 0.20 106575 107120 direct fr 3 0.67 0.36 106608 107120 direct fr 3 0.66 0.15 107209 107700 direct fr 1 0.79 0.39 107287 107700 direct fr 1 0.87 0.22 107377 107700 direct fr 1 0.84 0.25 107476 107700 direct fr 1 0.77 0.11 107749 110271 complement fr 3 0.78 0.24 107749 110265 complement fr 3 0.79 0.12 107749 110112 complement fr 3 0.79 0.01 107749 110109 complement fr 3 0.79 0.02 107749 110067 complement fr 3 0.80 0.62 107749 110052 complement fr 3 0.80 0.78 107749 110007 complement fr 3 0.80 0.01 110466 111107 direct fr 3 0.73 0.33 110487 111107 direct fr 3 0.76 0.17 110517 111107 direct fr 3 0.78 0.34 110541 111107 direct fr 3 0.77 0.14 110574 111107 direct fr 3 0.77 0.09 111104 111469 direct fr 2 0.51 0.11 111116 111469 direct fr 2 0.52 0.14 111269 111469 direct fr 2 0.75 0.14 111317 111469 direct fr 2 0.76 0.69 111326 111469 direct fr 2 0.75 0.38 111501 112385 complement fr 2 0.78 0.03 111501 112265 complement fr 2 0.80 0.06 111501 112094 complement fr 2 0.78 0.35 111501 112049 complement fr 2 0.77 0.13 112397 112963 complement fr 1 0.62 0.98 112397 112894 complement fr 1 0.62 0.02 112397 112804 complement fr 1 0.61 0.04 112397 112717 complement fr 1 0.57 0.01 112978 113436 complement fr 3 0.54 0.41 113765 114031 complement fr 1 0.58 0.04 113765 113971 complement fr 1 0.62 0.60 114028 114951 complement fr 3 0.65 0.01 114028 114837 complement fr 3 0.71 0.01 114028 114738 complement fr 3 0.73 0.03 114028 114660 complement fr 3 0.72 0.02 114028 114504 complement fr 3 0.77 0.55 114952 115959 complement fr 3 0.64 0.21 114952 115953 complement fr 3 0.64 0.22 114952 115920 complement fr 3 0.66 0.16 114952 115917 complement fr 3 0.66 0.10 114952 115911 complement fr 3 0.66 0.29 114952 115851 complement fr 3 0.65 0.17 114952 115644 complement fr 3 0.66 0.15 114952 115626 complement fr 3 0.67 0.01 114952 115596 complement fr 3 0.71 0.00 114952 115590 complement fr 3 0.71 0.01 115982 117295 complement fr 1 0.55 0.60 115982 117253 complement fr 1 0.56 0.05 115982 117181 complement fr 1 0.55 0.07 115982 117160 complement fr 1 0.55 0.05 115982 117070 complement fr 1 0.56 0.07 115982 116983 complement fr 1 0.58 0.01 115982 116827 complement fr 1 0.65 0.04 117309 117902 complement fr 2 0.82 0.62 117309 117794 complement fr 2 0.84 0.12 117309 117746 complement fr 2 0.83 0.48 117309 117461 complement fr 2 0.64 0.71 117895 118083 complement fr 3 0.63 0.23 118095 119141 complement fr 2 0.84 0.72 118095 119093 complement fr 2 0.87 0.24 118095 119063 complement fr 2 0.87 0.14 118095 119045 complement fr 2 0.87 0.01 120219 120518 complement fr 2 0.77 0.43 120524 121153 complement fr 1 0.76 0.47 120524 121141 complement fr 1 0.78 0.73 120524 121114 complement fr 1 0.82 0.71 120524 120958 complement fr 1 0.80 0.56 120524 120853 complement fr 1 0.74 0.06 121779 122942 complement fr 2 0.79 0.11 121779 122852 complement fr 2 0.82 0.64 121779 122537 complement fr 2 0.88 0.03 121779 122468 complement fr 2 0.88 0.29 122942 123790 complement fr 1 0.76 0.36 122942 123772 complement fr 1 0.77 0.73 122942 123514 complement fr 1 0.72 0.49 122942 123409 complement fr 1 0.68 0.15 122942 123310 complement fr 1 0.62 0.58 123805 124260 complement fr 3 0.60 0.18 123805 124149 complement fr 3 0.72 0.48 123805 124134 complement fr 3 0.71 0.14 123805 124035 complement fr 3 0.60 0.15 125086 126216 direct fr 1 0.68 0.82 125161 126216 direct fr 1 0.71 0.05 125182 126216 direct fr 1 0.71 0.17 125200 126216 direct fr 1 0.72 0.68 125416 126216 direct fr 1 0.77 0.04 125467 126216 direct fr 1 0.81 0.69 126318 126584 direct fr 3 0.50 0.13 126547 127365 direct fr 1 0.76 0.81 126571 127365 direct fr 1 0.78 0.92 126967 127365 direct fr 1 0.82 0.01 126994 127365 direct fr 1 0.81 0.43 127129 127365 direct fr 1 0.75 0.29 127367 128452 direct fr 2 0.78 0.04 127874 128452 direct fr 2 0.82 0.41 128090 128452 direct fr 2 0.75 0.16 128156 128452 direct fr 2 0.70 0.23 128505 129893 direct fr 3 0.86 0.99 128712 129893 direct fr 3 0.90 0.44 128745 129893 direct fr 3 0.91 0.29 128859 129893 direct fr 3 0.92 0.30 129165 129893 direct fr 3 0.90 0.05 129904 130590 direct fr 1 0.71 0.51 129940 130590 direct fr 1 0.74 0.15 130123 130590 direct fr 1 0.85 0.12 130189 130590 direct fr 1 0.85 0.26 130225 130590 direct fr 1 0.84 0.01 130462 130590 direct fr 1 0.65 0.21 130601 131182 direct fr 2 0.63 0.67 130622 131182 direct fr 2 0.65 0.31 130652 131182 direct fr 2 0.66 0.12 130667 131182 direct fr 2 0.67 0.12 130700 131182 direct fr 2 0.68 0.39 130712 131182 direct fr 2 0.67 0.72 131243 131617 direct fr 2 0.59 0.07 131294 131617 direct fr 2 0.68 0.22 131363 131617 direct fr 2 0.70 0.23 131402 131617 direct fr 2 0.64 0.11 131426 131617 direct fr 2 0.61 0.02 131682 132401 direct fr 3 0.52 0.41 131967 132401 direct fr 3 0.57 0.59 132027 132401 direct fr 3 0.58 0.02 132054 132401 direct fr 3 0.57 0.27 132087 132401 direct fr 3 0.57 0.04 132414 133607 direct fr 3 0.70 0.35 132432 133607 direct fr 3 0.70 0.67 132693 133607 direct fr 3 0.71 0.27 132720 133607 direct fr 3 0.70 0.07 132732 133607 direct fr 3 0.70 0.16 133610 133783 direct fr 2 0.65 0.55 133805 136900 direct fr 2 0.82 0.38 133832 136900 direct fr 2 0.83 0.46 133913 136900 direct fr 2 0.83 0.17 133916 136900 direct fr 2 0.83 0.21 133940 136900 direct fr 2 0.83 0.02 136944 139748 direct fr 3 0.86 0.58 137016 139748 direct fr 3 0.88 0.30 137097 139748 direct fr 3 0.88 0.09 137109 139748 direct fr 3 0.88 0.07 137580 139748 direct fr 3 0.90 0.03 137589 139748 direct fr 3 0.89 0.03 139846 140271 direct fr 1 0.74 0.38 140101 140271 direct fr 1 0.70 0.12 140952 141527 direct fr 3 0.72 0.67 140976 141527 direct fr 3 0.74 0.55 140997 141527 direct fr 3 0.76 0.04 141006 141527 direct fr 3 0.78 0.02 141546 142061 direct fr 3 0.82 0.81 141783 142061 direct fr 3 0.83 0.61 141858 142061 direct fr 3 0.78 0.05 142138 142401 direct fr 1 0.54 0.00 142141 142401 direct fr 1 0.57 0.00 142153 142401 direct fr 1 0.60 0.00 142231 142401 direct fr 1 0.82 0.28 142279 142401 direct fr 1 0.86 0.42 142324 142401 direct fr 1 0.82 0.29 142345 142401 direct fr 1 0.75 0.10 144109 144429 complement fr 3 0.66 0.62 144109 144276 complement fr 3 0.56 0.12 144749 145591 direct fr 2 0.75 0.62 144803 145591 direct fr 2 0.73 0.01 144836 145591 direct fr 2 0.72 0.05 145729 145857 direct fr 1 0.75 0.13 146031 146198 complement fr 2 0.53 0.44 146606 146995 direct fr 2 0.58 0.10 146642 146995 direct fr 2 0.64 0.44 146765 146995 direct fr 2 0.57 0.23 147049 147396 direct fr 1 0.51 0.30 147539 147979 complement fr 1 0.60 0.61 147539 147922 complement fr 1 0.63 0.01 147539 147745 complement fr 1 0.55 0.51 149294 149560 direct fr 2 0.80 0.33 149327 149560 direct fr 2 0.78 0.18 150690 151715 direct fr 3 0.85 0.03 150696 151715 direct fr 3 0.85 0.12 150705 151715 direct fr 3 0.86 0.20 150798 151715 direct fr 3 0.88 0.05 150819 151715 direct fr 3 0.88 0.12 150861 151715 direct fr 3 0.87 0.17 151696 153015 complement fr 3 0.60 0.78 151696 152958 complement fr 3 0.62 0.00 151696 152880 complement fr 3 0.66 0.27 151696 152811 complement fr 3 0.66 0.17 151696 152757 complement fr 3 0.66 0.25 151696 152514 complement fr 3 0.59 0.07 List of Regions of interest (regions from stop to stop codon w/ a signal in between) LEnd REnd Strand Frame -------- -------- ----------- ----- 569 1870 direct fr 2 1949 8365 direct fr 2 8438 8983 direct fr 2 8946 9767 direct fr 3 9760 10539 direct fr 1 10344 11687 direct fr 3 10362 10538 complement fr 2 11680 12858 direct fr 1 12839 13993 direct fr 2 13975 15687 direct fr 1 15793 16566 complement fr 3 16016 16192 direct fr 2 16497 17030 complement fr 2 17135 17611 direct fr 2 17692 18915 direct fr 1 18919 20625 direct fr 1 19101 19421 complement fr 2 19575 19982 complement fr 2 20629 22251 direct fr 1 22220 22774 direct fr 2 22775 24301 direct fr 2 24347 25429 direct fr 2 24697 24891 complement fr 3 25405 25980 direct fr 1 25970 26974 direct fr 2 26987 28279 direct fr 2 28089 28283 direct fr 3 28281 28433 direct fr 3 28385 28669 complement fr 1 28960 30117 direct fr 1 30238 30888 complement fr 3 31244 32761 complement fr 1 32779 33015 complement fr 3 32924 33907 direct fr 2 33220 33393 complement fr 3 33895 34389 direct fr 1 34383 35030 direct fr 3 35075 35545 direct fr 2 35577 35987 direct fr 3 35930 37555 direct fr 2 37473 37994 direct fr 3 38004 40478 direct fr 3 40435 40713 direct fr 1 40711 42777 direct fr 1 42767 43351 direct fr 2 43466 44146 complement fr 1 44144 44440 complement fr 1 44505 45080 direct fr 3 44983 45666 direct fr 1 45515 46153 direct fr 2 46107 46808 direct fr 3 46719 46961 complement fr 2 46795 47070 direct fr 1 47068 47271 direct fr 1 47265 47531 direct fr 3 47506 47799 direct fr 1 47912 48322 direct fr 2 48413 48565 complement fr 1 48587 49009 complement fr 1 49007 49564 complement fr 1 49278 49565 direct fr 3 49683 49934 direct fr 3 50039 50341 complement fr 1 50340 50531 direct fr 3 50740 51018 direct fr 1 50942 51259 direct fr 2 51285 52031 direct fr 3 52482 53261 complement fr 2 53221 53430 complement fr 3 53494 53682 complement fr 3 53809 54204 complement fr 3 54197 55402 complement fr 1 55378 55920 complement fr 3 55739 55921 direct fr 2 56406 56867 direct fr 3 56819 58135 direct fr 2 58054 58242 complement fr 3 58349 58570 direct fr 2 58560 59291 direct fr 3 59779 60450 direct fr 1 59778 59945 complement fr 2 60467 60628 direct fr 2 60571 61206 direct fr 1 61321 62319 direct fr 1 62276 63076 direct fr 2 63303 63545 direct fr 3 63900 65165 direct fr 3 65839 66474 direct fr 1 66472 68148 direct fr 1 68162 69187 direct fr 2 69185 71044 direct fr 2 70788 71141 complement fr 2 71232 72476 direct fr 3 72467 73063 direct fr 2 72984 73697 direct fr 3 73899 74153 direct fr 3 74150 74944 complement fr 1 75233 75571 direct fr 2 75295 75570 complement fr 3 75564 76373 complement fr 2 76523 78022 complement fr 1 77936 78115 direct fr 2 78329 79408 complement fr 1 79497 79784 complement fr 2 79827 80120 complement fr 2 80495 80860 direct fr 2 81046 81606 complement fr 3 81709 82047 complement fr 3 82045 82314 complement fr 3 82551 83396 complement fr 2 83794 84924 complement fr 3 84547 84801 direct fr 1 85284 85781 direct fr 3 85735 85902 direct fr 1 86182 87729 complement fr 3 87771 88028 complement fr 2 88093 89127 complement fr 3 88640 88903 direct fr 2 89918 91345 complement fr 1 91343 91951 complement fr 1 91435 91902 direct fr 1 91968 92549 direct fr 3 92658 92867 complement fr 2 92954 93670 direct fr 2 93811 94764 complement fr 3 94949 95191 complement fr 1 95186 95503 direct fr 2 95269 95634 complement fr 3 95827 96606 direct fr 1 96625 96984 direct fr 1 97016 97675 direct fr 2 97482 98189 direct fr 3 98164 98637 direct fr 1 98622 99281 direct fr 3 99438 99839 direct fr 3 99437 99613 complement fr 1 100084 100263 complement fr 3 100218 101075 complement fr 2 101361 102215 complement fr 2 102677 103843 direct fr 2 103171 103365 direct fr 1 104086 104409 complement fr 3 104452 105612 complement fr 3 106386 107120 direct fr 3 107203 107700 direct fr 1 107749 110295 complement fr 3 109784 110056 direct fr 2 110439 111107 direct fr 3 111085 111474 complement fr 3 111089 111469 direct fr 2 111501 112409 complement fr 2 112397 112975 complement fr 1 112978 113823 complement fr 3 113765 114055 complement fr 1 114028 114954 complement fr 3 114752 114955 direct fr 2 114952 115989 complement fr 3 115982 117319 complement fr 1 117309 117926 complement fr 2 117895 118119 complement fr 3 118095 119150 complement fr 2 120219 120563 complement fr 2 120524 121156 complement fr 1 121779 122954 complement fr 2 122942 123811 complement fr 1 123805 124272 complement fr 3 124112 124297 direct fr 2 125083 126216 direct fr 1 126240 126584 direct fr 3 126544 127365 direct fr 1 127304 128452 direct fr 2 128487 129893 direct fr 3 129898 130590 direct fr 1 130577 131182 direct fr 2 131180 131617 direct fr 2 131670 132401 direct fr 3 132399 133607 direct fr 3 133571 133783 direct fr 2 133793 136900 direct fr 2 136938 139748 direct fr 3 139843 140271 direct fr 1 140363 140995 direct fr 2 140898 141527 direct fr 3 141525 142061 direct fr 3 141895 142200 complement fr 3 142081 142401 direct fr 1 142399 142614 direct fr 1 142892 143110 direct fr 2 143108 143992 direct fr 2 144109 144447 complement fr 3 144578 145591 direct fr 2 144824 145120 complement fr 1 145612 145857 direct fr 1 146031 146231 complement fr 2 146594 146995 direct fr 2 146962 147396 direct fr 1 147539 147985 complement fr 1 148209 148412 direct fr 3 148796 148936 direct fr 2 149061 149297 direct fr 3 149219 149560 direct fr 2 150614 150769 direct fr 2 150672 151715 direct fr 3 151696 153027 complement fr 3 POSSIBLE SEQUENCE FRAMESHIFTS DETECTED From To Frame Frame At base... ----- ----- ---------- 2 3 28104 +/- 11 bp (direct) 2 1 103224 +/- 11 bp (direct) 2 1 103284 +/- 11 bp (direct) 3 2 149220 +/- 11 bp (direct) -------------------- ABOUT THE MATRIX USED: Training set derived by GeneMarkS, 4.6a Fri Jul 27 17:12:07 2007