GENEMARK PREDICTIONS Sequence: gi|146280242|ref|NC_009431.1| Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA03, complete sequence Sequence file: NC_009431.fna Sequence length: 121962 GC Content: 69.36% Window length: 96 Window step: 12 Threshold value: 0.500 --- Matrix: - Matrix author: - Matrix order: 2 List of Open reading frames predicted as CDSs, shown with alternate starts (regions from start to stop codon w/ coding function >0.50) Left Right DNA Coding Avg Start end end Strand Frame Prob Prob -------- -------- ---------- ----- ---- ---- 2 3787 direct fr 2 0.97 .... 152 3787 direct fr 2 0.97 0.01 212 3787 direct fr 2 0.97 0.01 263 3787 direct fr 2 0.97 0.15 4321 5418 complement fr 3 0.63 0.00 4321 5316 complement fr 3 0.69 0.00 4321 5277 complement fr 3 0.72 0.29 4321 5172 complement fr 3 0.71 0.00 4321 5040 complement fr 3 0.76 0.18 4321 4983 complement fr 3 0.74 0.00 4321 4926 complement fr 3 0.71 0.31 5264 6979 complement fr 1 0.68 0.03 5264 6952 complement fr 1 0.69 1.00 5264 6859 complement fr 1 0.68 0.01 5264 6796 complement fr 1 0.68 0.16 5264 6793 complement fr 1 0.68 0.16 5264 6751 complement fr 1 0.68 0.93 5264 6748 complement fr 1 0.68 0.80 8079 9728 direct fr 3 0.51 0.52 8151 9728 direct fr 3 0.53 0.12 8382 9728 direct fr 3 0.62 0.00 8475 9728 direct fr 3 0.66 0.00 8649 9728 direct fr 3 0.76 0.02 8832 9728 direct fr 3 0.90 1.00 8868 9728 direct fr 3 0.93 0.08 8871 9728 direct fr 3 0.93 0.04 8904 9728 direct fr 3 0.93 0.22 8130 8759 complement fr 2 0.88 0.20 8130 8648 complement fr 2 0.91 0.93 8130 8642 complement fr 2 0.91 0.78 8130 8636 complement fr 2 0.91 0.48 9835 11709 complement fr 3 0.54 0.00 9835 10911 complement fr 3 0.93 0.16 9835 10848 complement fr 3 0.96 0.19 9835 10839 complement fr 3 0.96 0.10 9835 10785 complement fr 3 0.96 0.00 10911 12425 complement fr 2 0.50 0.08 10911 12419 complement fr 2 0.51 0.09 10911 11906 complement fr 2 0.76 0.02 10911 11870 complement fr 2 0.79 0.02 10911 11801 complement fr 2 0.85 0.06 10911 11786 complement fr 2 0.86 0.62 10911 11753 complement fr 2 0.89 0.19 10911 11645 complement fr 2 0.93 0.41 10911 11642 complement fr 2 0.93 0.19 10911 11438 complement fr 2 0.91 0.02 11052 13280 direct fr 3 0.56 0.06 11607 13280 direct fr 3 0.75 0.00 11943 13280 direct fr 3 0.93 0.00 12042 13280 direct fr 3 1.00 0.96 12093 13280 direct fr 3 1.00 0.00 12186 13280 direct fr 3 1.00 0.01 13587 13922 complement fr 2 0.63 0.01 13587 13880 complement fr 2 0.73 0.92 13587 13871 complement fr 2 0.76 0.14 13587 13859 complement fr 2 0.79 0.13 13587 13838 complement fr 2 0.83 0.04 13587 13808 complement fr 2 0.84 0.92 13587 13697 complement fr 2 0.82 0.18 14054 14584 direct fr 2 0.77 0.00 14081 14584 direct fr 2 0.80 0.20 14180 14584 direct fr 2 0.87 0.01 14189 14584 direct fr 2 0.87 0.04 14192 14584 direct fr 2 0.87 0.01 14699 15466 direct fr 2 0.85 0.48 14744 15466 direct fr 2 0.90 0.93 14786 15466 direct fr 2 0.91 0.01 14813 15466 direct fr 2 0.90 0.05 15507 16301 direct fr 3 0.90 0.97 15537 16301 direct fr 3 0.92 0.87 15627 16301 direct fr 3 0.91 0.17 15651 16301 direct fr 3 0.90 0.01 16534 16674 direct fr 1 0.51 0.77 16543 16674 direct fr 1 0.55 0.89 16859 17065 complement fr 1 0.74 0.98 16859 17050 complement fr 1 0.83 0.69 16859 16987 complement fr 1 0.80 0.16 17317 17691 complement fr 3 0.76 0.78 17317 17661 complement fr 3 0.84 0.50 17317 17568 complement fr 3 0.78 0.00 17317 17535 complement fr 3 0.80 0.17 17317 17508 complement fr 3 0.85 0.98 18993 19229 complement fr 2 0.55 0.00 18993 19124 complement fr 2 0.56 0.01 19683 19889 direct fr 3 0.68 0.02 19689 19889 direct fr 3 0.68 0.03 19749 19889 direct fr 3 0.60 0.63 19952 20461 complement fr 1 0.52 0.00 19952 20290 complement fr 1 0.80 0.68 19952 20203 complement fr 1 0.82 0.10 19952 20146 complement fr 1 0.77 0.01 19952 20074 complement fr 1 0.64 0.01 21291 22238 direct fr 3 0.94 1.00 21306 22238 direct fr 3 0.95 1.00 21321 22238 direct fr 3 0.96 0.84 21330 22238 direct fr 3 0.96 0.05 21345 22238 direct fr 3 0.96 0.00 20362 21294 direct fr 1 0.88 0.00 20413 21294 direct fr 1 0.94 0.87 20515 21294 direct fr 1 0.95 0.85 20581 21294 direct fr 1 0.95 0.13 20596 21294 direct fr 1 0.95 0.40 22183 23175 direct fr 1 0.88 0.00 22231 23175 direct fr 1 0.92 0.97 22363 23175 direct fr 1 0.95 0.10 22366 23175 direct fr 1 0.95 0.04 22384 23175 direct fr 1 0.94 0.02 23145 23930 direct fr 3 0.92 0.26 23172 23930 direct fr 3 0.94 0.95 23202 23930 direct fr 3 0.98 0.43 23229 23930 direct fr 3 0.98 0.13 23310 23930 direct fr 3 0.98 0.01 24084 26018 complement fr 2 0.95 0.09 24084 25997 complement fr 2 0.96 0.68 24084 25904 complement fr 2 0.98 0.02 24084 25856 complement fr 2 0.98 0.02 24084 25781 complement fr 2 0.98 0.01 26220 26318 complement fr 2 0.60 0.00 26504 26749 complement fr 1 0.72 0.00 26874 27569 complement fr 2 0.72 0.00 26874 27296 complement fr 2 0.79 0.67 26874 27281 complement fr 2 0.78 0.06 26874 27227 complement fr 2 0.75 0.66 27638 28411 direct fr 2 0.95 0.96 27662 28411 direct fr 2 0.95 0.76 27719 28411 direct fr 2 0.95 0.00 28567 30324 direct fr 1 0.87 0.00 28603 30324 direct fr 1 0.88 0.00 28687 30324 direct fr 1 0.93 0.00 28738 30324 direct fr 1 0.96 0.99 28741 30324 direct fr 1 0.96 0.99 28774 30324 direct fr 1 0.97 0.02 28798 30324 direct fr 1 0.97 0.17 28939 30324 direct fr 1 0.97 0.41 30296 32872 direct fr 2 0.92 0.03 30389 32872 direct fr 2 0.96 0.01 30470 32872 direct fr 2 0.98 0.16 30485 32872 direct fr 2 0.98 0.03 30566 32872 direct fr 2 0.98 0.01 33049 34155 complement fr 3 0.79 0.34 33049 33984 complement fr 3 0.93 0.93 33049 33927 complement fr 3 0.93 0.02 33049 33906 complement fr 3 0.93 0.00 34213 34752 complement fr 3 0.64 0.00 34213 34653 complement fr 3 0.77 0.03 34213 34554 complement fr 3 0.81 0.04 34213 34464 complement fr 3 0.74 0.09 34213 34425 complement fr 3 0.70 0.03 35335 37002 direct fr 1 0.88 0.97 35473 37002 direct fr 1 0.90 0.01 35536 37002 direct fr 1 0.90 0.00 35614 37002 direct fr 1 0.89 0.01 37146 37901 direct fr 3 0.66 0.01 37173 37901 direct fr 3 0.68 0.02 37179 37901 direct fr 3 0.69 0.00 37260 37901 direct fr 3 0.77 0.02 37263 37901 direct fr 3 0.78 0.01 37410 37901 direct fr 3 0.89 0.00 37461 37901 direct fr 3 0.87 0.01 37638 37901 direct fr 3 0.85 0.09 37865 40792 direct fr 2 0.92 0.07 37898 40792 direct fr 2 0.93 0.04 37964 40792 direct fr 2 0.95 0.05 37982 40792 direct fr 2 0.96 0.08 38168 40792 direct fr 2 0.97 0.04 38303 40792 direct fr 2 0.97 0.00 38324 40792 direct fr 2 0.97 0.01 40917 42464 complement fr 2 0.82 0.02 40917 42443 complement fr 2 0.83 0.89 40917 42437 complement fr 2 0.83 0.58 40917 42353 complement fr 2 0.86 0.94 40917 42323 complement fr 2 0.85 0.00 40917 42239 complement fr 2 0.85 0.43 42489 44609 direct fr 3 0.94 0.03 42507 44609 direct fr 3 0.95 0.00 42516 44609 direct fr 3 0.95 0.00 42561 44609 direct fr 3 0.97 0.22 42585 44609 direct fr 3 0.98 0.20 42639 44609 direct fr 3 0.99 0.77 42642 44609 direct fr 3 0.99 0.65 42759 44609 direct fr 3 0.99 0.00 44882 46186 complement fr 1 0.89 0.99 44882 46165 complement fr 1 0.90 1.00 44882 46129 complement fr 1 0.92 0.00 44882 46006 complement fr 1 0.91 0.03 44882 45985 complement fr 1 0.90 0.02 47815 48069 direct fr 1 0.51 0.77 48142 48282 complement fr 3 0.52 0.50 48142 48276 complement fr 3 0.57 0.64 48142 48270 complement fr 3 0.57 0.91 48142 48264 complement fr 3 0.62 0.97 51284 51673 complement fr 1 0.58 0.81 51284 51616 complement fr 1 0.56 0.15 51694 51828 complement fr 3 0.58 0.04 51694 51825 complement fr 3 0.58 0.18 51694 51798 complement fr 3 0.50 0.42 52623 52829 direct fr 3 0.53 0.38 52638 52829 direct fr 3 0.55 0.43 52701 52829 direct fr 3 0.59 0.83 52713 52829 direct fr 3 0.56 0.47 54684 55073 complement fr 2 0.58 0.81 54684 55016 complement fr 2 0.56 0.15 55094 55420 complement fr 1 0.51 0.53 55094 55228 complement fr 1 0.62 0.04 55094 55225 complement fr 1 0.62 0.18 55613 55837 direct fr 2 0.77 0.74 55637 55837 direct fr 2 0.86 0.95 55655 55837 direct fr 2 0.91 0.20 55715 55837 direct fr 2 0.89 0.02 55748 55837 direct fr 2 0.86 0.01 56140 56226 direct fr 1 0.55 0.99 56143 56226 direct fr 1 0.55 0.98 58008 58397 complement fr 2 0.58 0.81 58008 58340 complement fr 2 0.56 0.15 58418 58744 complement fr 1 0.51 0.53 58418 58552 complement fr 1 0.62 0.04 58418 58549 complement fr 1 0.62 0.18 60559 60909 direct fr 1 0.51 0.54 60598 60909 direct fr 1 0.53 0.54 60610 60909 direct fr 1 0.51 0.63 60906 61259 direct fr 3 0.81 1.00 60993 61259 direct fr 3 0.82 0.12 61002 61259 direct fr 3 0.81 0.11 61158 61259 direct fr 3 0.55 0.08 61310 62899 direct fr 2 0.86 0.01 61328 62899 direct fr 2 0.87 0.17 61358 62899 direct fr 2 0.88 0.98 61472 62899 direct fr 2 0.88 0.16 61562 62899 direct fr 2 0.87 0.54 63208 64410 direct fr 1 0.86 0.01 63352 64410 direct fr 1 0.90 0.33 63415 64410 direct fr 1 0.90 0.44 63460 64410 direct fr 1 0.89 0.00 64434 66023 complement fr 2 0.86 0.01 64434 66005 complement fr 2 0.87 0.34 64434 65975 complement fr 2 0.88 0.98 64434 65861 complement fr 2 0.87 0.10 64434 65771 complement fr 2 0.86 0.30 66074 66427 complement fr 1 0.82 1.00 66074 66340 complement fr 1 0.78 0.13 66074 66331 complement fr 1 0.77 0.07 66424 66774 complement fr 3 0.51 0.51 66908 68647 direct fr 2 0.89 0.07 66926 68647 direct fr 2 0.90 0.98 66989 68647 direct fr 2 0.91 0.01 67103 68647 direct fr 2 0.93 0.95 67109 68647 direct fr 2 0.93 0.55 68825 69622 direct fr 2 0.78 0.70 68882 69622 direct fr 2 0.83 0.38 68954 69622 direct fr 2 0.81 0.01 68987 69622 direct fr 2 0.80 0.00 69619 70410 direct fr 1 0.94 0.04 69622 70410 direct fr 1 0.94 0.02 69646 70410 direct fr 1 0.97 0.90 69880 70410 direct fr 1 1.00 0.01 69976 70410 direct fr 1 1.00 0.00 70021 70410 direct fr 1 1.00 0.11 70530 72185 direct fr 3 0.62 0.00 70995 72185 direct fr 3 0.86 0.00 71097 72185 direct fr 3 0.93 1.00 71157 72185 direct fr 3 0.95 0.01 71214 72185 direct fr 3 0.95 0.48 71226 72185 direct fr 3 0.95 0.14 70414 71100 direct fr 1 0.96 0.31 70447 71100 direct fr 1 0.95 0.85 70483 71100 direct fr 1 0.95 0.00 72098 73027 direct fr 2 0.77 0.00 72233 73027 direct fr 2 0.90 0.81 72341 73027 direct fr 2 0.96 0.41 72380 73027 direct fr 2 0.96 0.00 72398 73027 direct fr 2 0.96 0.00 73112 73954 direct fr 2 0.92 1.00 73220 73954 direct fr 2 0.95 0.81 73223 73954 direct fr 2 0.95 0.71 73241 73954 direct fr 2 0.95 0.18 75603 75686 direct fr 3 0.99 0.46 75606 75686 direct fr 3 0.99 0.38 75618 75686 direct fr 3 0.99 0.05 75696 75872 direct fr 3 0.76 0.99 75792 75872 direct fr 3 0.52 0.01 75869 76285 direct fr 2 0.51 0.91 75878 76285 direct fr 2 0.50 0.05 76019 76285 direct fr 2 0.51 0.14 76100 76285 direct fr 2 0.68 0.93 76793 77674 direct fr 2 0.73 0.92 76925 77674 direct fr 2 0.83 0.98 76970 77674 direct fr 2 0.83 0.00 77021 77674 direct fr 2 0.82 0.28 77956 79044 complement fr 3 0.84 0.00 77956 79011 complement fr 3 0.86 0.83 77956 79008 complement fr 3 0.87 0.81 77956 78927 complement fr 3 0.89 0.09 77956 78921 complement fr 3 0.89 0.16 77956 78915 complement fr 3 0.89 0.12 79008 80315 complement fr 2 0.89 0.97 79008 80288 complement fr 2 0.91 0.96 79008 80255 complement fr 2 0.90 0.12 79008 80180 complement fr 2 0.90 0.50 80797 81387 direct fr 1 0.55 0.92 80806 81387 direct fr 1 0.55 0.22 80839 81387 direct fr 1 0.53 0.01 81666 82406 direct fr 3 0.54 0.05 81708 82406 direct fr 3 0.56 0.00 81765 82406 direct fr 3 0.62 0.05 82050 82406 direct fr 3 0.70 0.00 82095 82406 direct fr 3 0.66 0.88 82146 82406 direct fr 3 0.60 0.05 82447 83736 complement fr 3 0.84 0.01 82447 83709 complement fr 3 0.86 0.93 82447 83682 complement fr 3 0.87 0.94 82447 83658 complement fr 3 0.86 0.11 82447 83643 complement fr 3 0.86 0.01 83733 84467 complement fr 2 0.83 0.00 83733 84401 complement fr 2 0.90 0.77 83733 84389 complement fr 2 0.92 0.89 83733 84323 complement fr 2 0.91 0.01 83733 84257 complement fr 2 0.90 0.01 84398 84697 complement fr 1 0.70 0.04 84398 84646 complement fr 1 0.79 0.90 84398 84532 complement fr 1 0.67 0.00 84398 84496 complement fr 1 0.55 0.60 84679 85626 direct fr 1 0.80 0.00 84703 85626 direct fr 1 0.82 0.00 84784 85626 direct fr 1 0.90 0.08 84787 85626 direct fr 1 0.90 0.14 84808 85626 direct fr 1 0.93 0.30 84892 85626 direct fr 1 0.96 0.96 84919 85626 direct fr 1 0.96 0.06 85827 86033 complement fr 2 0.63 0.64 85827 86018 complement fr 2 0.67 0.70 85827 85955 complement fr 2 0.69 0.56 86291 88015 complement fr 1 0.63 0.02 86291 87931 complement fr 1 0.66 0.00 86291 87907 complement fr 1 0.67 0.08 86291 87895 complement fr 1 0.68 0.89 86291 87868 complement fr 1 0.69 0.13 86291 87865 complement fr 1 0.69 0.07 86291 87859 complement fr 1 0.69 0.04 86291 87853 complement fr 1 0.69 0.02 86291 87814 complement fr 1 0.71 0.49 86291 87763 complement fr 1 0.73 0.00 87327 88790 direct fr 3 0.68 0.11 87498 88790 direct fr 3 0.77 0.01 87648 88790 direct fr 3 0.87 0.02 87729 88790 direct fr 3 0.94 0.82 87735 88790 direct fr 3 0.95 0.96 87813 88790 direct fr 3 0.98 0.48 87906 88790 direct fr 3 0.98 0.24 87942 88790 direct fr 3 0.98 0.07 88780 89454 direct fr 1 0.87 0.95 88834 89454 direct fr 1 0.91 0.01 88837 89454 direct fr 1 0.91 0.00 88852 89454 direct fr 1 0.91 0.00 89484 90260 direct fr 3 0.97 0.95 89493 90260 direct fr 3 0.98 0.78 89589 90260 direct fr 3 0.98 0.09 90295 91740 complement fr 3 0.85 0.02 90295 91620 complement fr 3 0.93 0.54 90295 91572 complement fr 3 0.95 0.43 90295 91395 complement fr 3 0.94 0.08 90295 91323 complement fr 3 0.94 0.00 91688 92575 complement fr 1 0.68 0.00 91688 92386 complement fr 1 0.86 0.01 91688 92365 complement fr 1 0.88 0.69 91688 92344 complement fr 1 0.91 0.99 91688 92323 complement fr 1 0.91 0.90 91688 92290 complement fr 1 0.91 0.04 92755 93750 complement fr 3 0.75 0.00 92755 93612 complement fr 3 0.88 0.66 92755 93513 complement fr 3 0.91 0.70 92755 93393 complement fr 3 0.94 0.88 92755 93330 complement fr 3 0.94 0.02 92755 93267 complement fr 3 0.93 0.01 93768 95510 direct fr 3 0.96 0.00 93792 95510 direct fr 3 0.98 1.00 93801 95510 direct fr 3 0.98 1.00 93819 95510 direct fr 3 0.99 1.00 93834 95510 direct fr 3 0.99 0.01 97122 97835 direct fr 3 0.74 0.00 97215 97835 direct fr 3 0.85 1.00 97218 97835 direct fr 3 0.85 1.00 97236 97835 direct fr 3 0.85 0.64 97985 98590 direct fr 2 0.93 0.98 98012 98590 direct fr 2 0.95 0.75 98018 98590 direct fr 2 0.95 0.13 98090 98590 direct fr 2 0.94 0.01 98452 99252 direct fr 1 0.74 0.00 98587 99252 direct fr 1 0.89 0.98 98617 99252 direct fr 1 0.92 0.94 98728 99252 direct fr 1 0.92 0.27 98797 99252 direct fr 1 0.90 0.02 99267 101732 direct fr 3 0.99 0.07 99357 101732 direct fr 3 0.99 0.09 99366 101732 direct fr 3 0.99 0.03 101767 102192 direct fr 1 0.92 0.98 101842 102192 direct fr 1 1.00 0.00 101851 102192 direct fr 1 1.00 0.00 101905 102192 direct fr 1 1.00 0.00 102261 104465 direct fr 3 0.97 0.62 102342 104465 direct fr 3 0.97 0.36 102348 104465 direct fr 3 0.97 0.17 104530 105048 direct fr 1 0.98 0.98 104617 105048 direct fr 1 1.00 0.00 104632 105048 direct fr 1 1.00 0.00 104716 105048 direct fr 1 0.99 0.01 105058 105237 direct fr 1 0.95 0.12 105091 105237 direct fr 1 0.94 0.87 105145 105237 direct fr 1 0.90 0.01 105241 105933 direct fr 1 0.95 0.89 105253 105933 direct fr 1 0.96 0.90 105358 105933 direct fr 1 0.96 0.02 105397 105933 direct fr 1 0.96 0.02 105558 107111 direct fr 3 0.72 0.00 105930 107111 direct fr 3 0.95 0.88 106017 107111 direct fr 3 0.98 0.05 106038 107111 direct fr 3 0.98 0.01 106083 107111 direct fr 3 0.98 0.00 107104 107577 direct fr 1 0.87 1.00 107128 107577 direct fr 1 0.92 0.97 107149 107577 direct fr 1 0.93 0.01 107182 107577 direct fr 1 0.93 0.39 107212 107577 direct fr 1 0.92 0.41 107681 108634 direct fr 2 0.95 0.95 107696 108634 direct fr 2 0.96 0.83 107738 108634 direct fr 2 0.96 0.15 108636 109031 direct fr 3 0.76 0.88 108672 109031 direct fr 3 0.83 0.93 108720 109031 direct fr 3 0.84 0.04 108783 109031 direct fr 3 0.79 0.02 108801 109031 direct fr 3 0.78 0.04 109135 109533 direct fr 1 0.92 0.88 109276 109533 direct fr 1 0.95 0.34 109351 109533 direct fr 1 0.93 0.05 109538 111928 direct fr 2 0.97 0.97 109658 111928 direct fr 2 0.98 0.01 109667 111928 direct fr 2 0.98 0.01 109685 111928 direct fr 2 0.98 0.00 111768 113987 direct fr 3 0.86 0.00 111897 113987 direct fr 3 0.92 0.01 111921 113987 direct fr 3 0.93 0.00 112164 113987 direct fr 3 0.95 0.11 112191 113987 direct fr 3 0.95 0.04 112230 113987 direct fr 3 0.95 0.03 112628 116575 direct fr 2 0.63 0.03 112811 116575 direct fr 2 0.66 0.00 113168 116575 direct fr 2 0.73 0.00 113453 116575 direct fr 2 0.79 0.00 113546 116575 direct fr 2 0.82 0.00 113981 116575 direct fr 2 0.95 0.00 114116 116575 direct fr 2 0.97 0.07 114206 116575 direct fr 2 0.97 0.18 114251 116575 direct fr 2 0.97 0.01 116556 117713 direct fr 3 0.92 0.00 116580 117713 direct fr 3 0.94 1.00 116625 117713 direct fr 3 0.97 0.00 116652 117713 direct fr 3 0.97 0.00 116712 117713 direct fr 3 0.96 0.01 117717 119318 direct fr 3 0.93 0.00 117765 119318 direct fr 3 0.96 0.94 117771 119318 direct fr 3 0.96 0.63 117840 119318 direct fr 3 0.97 0.83 117846 119318 direct fr 3 0.97 0.68 118880 121273 direct fr 2 0.79 0.00 119306 121273 direct fr 2 0.96 0.05 119315 121273 direct fr 2 0.96 0.27 119486 121273 direct fr 2 0.99 0.01 119498 121273 direct fr 2 0.99 0.00 119546 121273 direct fr 2 0.98 0.30 121270 121935 direct fr 1 0.86 1.00 121291 121935 direct fr 1 0.89 0.49 121294 121935 direct fr 1 0.89 0.26 121360 121935 direct fr 1 0.88 0.23 List of Regions of interest (regions from stop to stop codon w/ a signal in between) LEnd REnd Strand Frame -------- -------- ----------- ----- 2 3787 direct fr 2 4321 5484 complement fr 3 5264 6997 complement fr 1 7387 8379 direct fr 1 8067 9728 direct fr 3 8130 8828 complement fr 2 9835 12606 complement fr 3 10704 13280 direct fr 3 10911 13448 complement fr 2 13234 14157 complement fr 3 13587 14003 complement fr 2 13880 14584 direct fr 2 14660 15466 direct fr 2 15429 16301 direct fr 3 16165 16674 direct fr 1 16859 17362 complement fr 1 17317 17790 complement fr 3 17788 18330 complement fr 3 18328 18630 complement fr 3 18993 19904 complement fr 2 19515 19889 direct fr 3 19952 20494 complement fr 1 20029 21294 direct fr 1 20223 22238 direct fr 3 22054 23175 direct fr 1 22236 23930 direct fr 3 24084 26087 complement fr 2 26220 26876 complement fr 2 26504 26854 complement fr 1 26874 27782 complement fr 2 27338 28411 direct fr 2 28516 30324 direct fr 1 30242 32872 direct fr 2 33049 34215 complement fr 3 34213 34803 complement fr 3 35332 37002 direct fr 1 36822 37901 direct fr 3 37361 40792 direct fr 2 40917 42482 complement fr 2 42468 44609 direct fr 3 44882 46192 complement fr 1 46176 46850 complement fr 2 46955 47698 direct fr 2 47509 48069 direct fr 1 48142 48366 complement fr 3 48768 50834 complement fr 2 51284 51910 complement fr 1 51694 52233 complement fr 3 52425 52829 direct fr 3 53310 54104 complement fr 2 53541 54035 direct fr 3 54226 55182 complement fr 3 54684 55310 complement fr 2 55094 55513 complement fr 1 55490 55837 direct fr 2 55756 56226 direct fr 1 56277 56537 complement fr 2 56286 57005 direct fr 3 57003 58013 direct fr 3 58008 58634 complement fr 2 58418 58885 complement fr 1 58660 59310 direct fr 1 59066 59971 direct fr 2 59836 60441 direct fr 1 59968 60927 complement fr 3 60439 60909 direct fr 1 60801 61259 direct fr 3 61271 62899 direct fr 2 62900 63121 complement fr 1 63190 64410 direct fr 1 64434 66062 complement fr 2 66074 66532 complement fr 1 66406 67089 direct fr 1 66424 66894 complement fr 3 66812 68647 direct fr 2 68810 69622 direct fr 2 69463 70410 direct fr 1 69552 72185 direct fr 3 70408 71100 direct fr 1 71081 73027 direct fr 2 73025 73954 direct fr 2 74090 75811 complement fr 1 74925 75686 direct fr 3 75684 75872 direct fr 3 75752 76285 direct fr 2 76769 77674 direct fr 2 77956 79143 complement fr 3 79008 80348 complement fr 2 80665 81387 direct fr 1 81543 82406 direct fr 3 82447 83865 complement fr 3 83733 84542 complement fr 2 84398 84724 complement fr 1 84511 85626 direct fr 1 85827 86216 complement fr 2 86291 88024 complement fr 1 87324 88790 direct fr 3 88762 89454 direct fr 1 89421 90260 direct fr 3 90295 91791 complement fr 3 91688 92590 complement fr 1 92755 93897 complement fr 3 93696 95510 direct fr 3 95672 95998 direct fr 2 95996 96865 direct fr 2 96083 97465 complement fr 1 97116 97835 direct fr 3 97844 98590 direct fr 2 97888 99252 direct fr 1 98688 101732 direct fr 3 101746 102192 direct fr 1 102201 104465 direct fr 3 104440 105048 direct fr 1 105046 105237 direct fr 1 105235 105933 direct fr 1 105525 107111 direct fr 3 106125 107645 complement fr 2 107032 107577 direct fr 1 107570 108634 direct fr 2 108522 109031 direct fr 3 108919 109533 direct fr 1 109373 111928 direct fr 2 111660 113987 direct fr 3 112478 116575 direct fr 2 116457 117713 direct fr 3 117711 119318 direct fr 3 117995 121273 direct fr 2 121120 121935 direct fr 1 POSSIBLE SEQUENCE FRAMESHIFTS DETECTED From To Frame Frame At base... ----- ----- ---------- 1 2 26556 +/- 11 bp (complement) 1 3 102204 +/- 11 bp (direct) -------------------- ABOUT THE MATRIX USED: Training set derived by GeneMarkS, 4.6a Wed May 9 11:21:26 2007