LOCUS NC_008501 3361 bp DNA circular BCT 31-OCT-2006 DEFINITION Streptococcus thermophilus LMD-9 plasmid 2, complete sequence. ACCESSION NC_008501 VERSION NC_008501.1 GI:116326684 KEYWORDS . SOURCE Streptococcus thermophilus LMD-9 ORGANISM Streptococcus thermophilus LMD-9 Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. REFERENCE 1 (bases 1 to 3361) AUTHORS Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B., Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N., Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K., Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J., Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B., Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E., Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D., Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D., Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P., Kozyavkin,S., Weimer,B. and Mills,D. TITLE Comparative genomics of the lactic acid bacteria JOURNAL Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006) PUBMED 17030793 REFERENCE 2 (bases 1 to 3361) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (21-OCT-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3361) AUTHORS Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S., Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N., Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S., Makarova,K., Koonin,E., Mills,D.A. and Richardson,P. CONSRTM US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc. TITLE Direct Submission JOURNAL Submitted (22-JUN-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000421. URL -- http://www.jgi.doe.gov JGI Project ID: 2662188 Source DNA and bacteria available from Robert Hutkins (rhutkins1@unl.edu) Contacts: Robert Hutkins (rhutkins1@unl.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Annotation done by Kira Makarova and Eugene Koonin Finishing done by Fidelity Systems Inc. (Gaithersburg)URL -- http://www.fidelitysystems.com Project Information available at: http://genome.jgi-psf.org/mic_home.html The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3361 /organism="Streptococcus thermophilus LMD-9" /mol_type="genomic DNA" /strain="LMD-9" /db_xref="taxon:322159" /plasmid="2" gene complement(77..505) /locus_tag="STER_B1" /db_xref="GeneID:4405946" CDS complement(77..505) /locus_tag="STER_B1" /codon_start=1 /transl_table=11 /product="Molecular chaperone (small heat shock protein)" /protein_id="YP_796431.1" /db_xref="GI:116326685" /db_xref="GeneID:4405946" /translation="MLNKIQPRNSDTYSMTPFDFFEDFSRNLFNDFKSNLIKTDIHET DNEYLVEAELPGIPKENIQVTYEDGVLTISGQQQIDTVDEDKKGKLIRSERSSTSLRR QYLLENVKEDEIKASYSDGILKVTLPKDSNKEIKKSIPIE" gene 2200..3144 /locus_tag="STER_B2" /db_xref="GeneID:4405947" CDS 2200..3144 /locus_tag="STER_B2" /codon_start=1 /transl_table=11 /product="Plasmid rolling circle replication initiator protein" /protein_id="YP_796432.1" /db_xref="GI:116326686" /db_xref="GeneID:4405947" /translation="MDKIQNQEEILVDKNSRGKDRNWRGRKILSLKLADIFKELQYKD SLIERVATCGDTLRFIRREDGSLKLYQAYFCKNKLCPMCNWRRSMKYSYQTSRIVDEA IKQEPKARFLFLTLTVKNVEGEALNSTISQLTKSFDRLFRRAKVKKNLLGYLRSVEVT HNENDNTYHPHIHVLMMVKSSYFKGGNYISQIEWSGIWSQSLKVSYTPMVDIRTVKET GKGLRGAVLETAKYPTKPIKLDVENMQVVDDLYNGLYRKRQLGYGGLFKTIKKQLQLD DVENGDLIHTSDDKENISKGTEIVAIWNVTKQNYYLKK" ORIGIN 1 caagatttta acactctcaa aaaagaaaag gcgcctataa aattttatag acgtctcttt 61 tcgtaatttt taattactac tcaattggaa tagatttttt tatttctttg ttgctatctt 121 ttggcaaggt tactttaaga attccatctg aataagaagc ctttatttcg tcttctttaa 181 cattttctaa taaatattga cgtcggagac ttgttgaact acgttcgcta cgaatcaact 241 ttcctttttt atcttcgtct actgtatcaa tttgttgttg cccactaatt gttaatactc 301 cgtcttcgta agtaacttga atgttttctt taggaatacc aggaagttca gcttctacaa 361 gatattcatt atcagtttca tgaatatctg ttttgattaa attggactta aaatcattga 421 ataaattacg actaaagtct tcaaaaaaat caaaaggcgt catactatat gtgtctgagt 481 tgcgtggttg aatcttattt aacataataa tcactccttt ctatattctc acttcaattg 541 ttattatagt ccaaaaaagt cagttttcaa gtattatgtc tttgaaattg taaaatcgtg 601 ctacgggcgt tttatagggg tttaacaacg tcactatttt agttcgtcca actgttggac 661 aattaggacg ttttataccg acattttcta acaaattcaa ttgttcgcaa aacgaacaaa 721 caaaccttgt tctttctagt acactaaatt taattgttcc taaattgtgc gacgtggtag 781 aatttggaag ctcttaaatg tcgtaacgtt tcgacatttg gaagctccta aatgttgtaa 841 cgttgcaata tttggaagtt cttaaaagcg actacgtggt cgtatttgat atatgtaggg 901 tgtaaaattt tccacgacct agcaagaaag aaagtcaaag actacgttat caagttggaa 961 aatgtccaac caaattggaa aaattccaac cagtttccaa ccagtgtcca acagagatag 1021 agttagaatt agagttaaat ctagatataa agacagaagt agaagagaga aatagacaga 1081 tgtcttctgc tactgctgaa ttacacttat aagcgtctat cacaaactgt tagacaattc 1141 taaccaaacg acaaccattt ggcaacccaa tataagtaaa gataatataa gtaaagtcag 1201 tataagtgaa gatagtataa gtgaatataa ttcagtaaaa gataattcat gtggtcaact 1261 tggttggttg agttgccttg agctgttagt cttttttgac taatagctat aaattttagc 1321 caggcgattt atgccgagaa aactcttgtc agtaagctga gcgatttaga ctgaaagtgt 1381 ctgagtcgca agactgaaag cttgcgataa ggacacgaag tctagaaaat cagcgaaagg 1441 ttacttgctg acaagaggaa attggaataa aaagccttaa tttttgagtg atgtgatttc 1501 ttccatgtca tatctctttc atatgcccct aattctcaaa tttcgggggt tatttgccgt 1561 tttaccgtct ctctagtaaa tgtaccgcta gattatttag gacggttaca agcgatttta 1621 gagccatttc ttgccctttt ggataaagta agctctgact tgctttcctt tatcggtacg 1681 ctgtatcata gcaatttatt ttgctatgtt cagctttatg atgtggtcgg tcatatcttg 1741 cagatctcca agggtggtac atttttgggt catccttaaa tagtcctcgt ttttggcaaa 1801 accatatagc tagatgttcg aacctgctca aatttgagcg tattgaaatc ttgattttgc 1861 tgtgtagttg taactacgga gccatatttc tcgttgttct ctcgtgcttc tttggtgaat 1921 ttttcctgaa agtaaaaaga gggctgaaag cccaaaaaaa gcagtcgaaa gactgctttc 1981 ttcttatctt gatactagta ggaaataact ctcacgcaaa aaacatatca ccatgacctt 2041 gtaaaccctt gatactactg gatttttagg caaaaaaaaa gctcctttac ggtataaagc 2101 tttcgtgtta taatttaagg tgcttaatca aaaattatga aaggataacg taaggagttt 2161 tttttatttc tttgttatta taacaggtaa gattatatca tggataaaat ccaaaatcaa 2221 gaggaaattc ttgtcgataa aaacagccga ggaaaagata ggaattggag aggacgaaaa 2281 atattaagtt tgaaattagc tgatatcttt aaagaattgc agtacaaaga tagtcttatt 2341 gagcgagtgg caacgtgtgg tgatactttg cgatttattc ggcgagaaga tggttcttta 2401 aaattatatc aggcttattt ctgtaaaaac aagctatgtc ctatgtgcaa ttggagacgt 2461 tcaatgaaat actcttatca gacatcaagg attgtagacg aagctataaa acaagaacct 2521 aaagcacgct tcctatttct gacattgact gttaagaatg ttgagggtga agccttgaat 2581 agtacgatta gtcagctgac aaaatcattt gaccgtttat ttagacgtgc taaagtaaag 2641 aaaaatctgt tagggtattt acgttctgta gaagtcactc ataacgaaaa tgataataca 2701 tatcaccctc atatccatgt tttgatgatg gtaaaatcta gttattttaa aggtgggaat 2761 tacatttcac aaatagagtg gagtggaata tggtcgcagt cactcaaggt ctcttacacg 2821 cctatggtag atattcgaac agtcaaagag actggcaaag gactgagagg ggcagtcttg 2881 gaaaccgcaa aatatccaac taaaccgatt aagcttgatg tagagaatat gcaagtggta 2941 gatgacctat ataacggtct gtatcgaaaa agacaactcg gctatggtgg tctatttaag 3001 acaatcaaga agcaattaca acttgatgat gttgaaaatg gcgatttaat tcatacgtct 3061 gacgataaag aaaatatctc aaaaggtaca gaaatagtcg ctatttggaa cgtcacaaag 3121 caaaattatt atctgaaaaa ataaaatcaa gcttctcgaa agaggggctt tttttattgt 3181 atgacacccc ttaaaattct agaaaattgg tgcgtgacgt gagaaaatac cttgtggtgg 3241 ctctcctaag cacgagaatg ggcggggggc gttttaaata gtatcaaggg taaatctacc 3301 agtcaactat aaaatcgtgc tacgggcttt ttagagggct ttagtgatgt cctagaaaaa 3361 t //