GENEMARK PREDICTIONS Sequence: gi|78045239|ref|NC_007504.1| Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV2, complete sequence Sequence file: NC_007504.fna Sequence length: 1852 GC Content: 56.59% Window length: 96 Window step: 12 Threshold value: 0.500 --- Matrix: Heuristic, GC = 57 Matrix author: Borodovsky Laboratory - Georgia Tech, School of Biology, Atlanta, GA, USA Matrix order: 2 List of Open reading frames predicted as CDSs, shown with alternate starts (regions from start to stop codon w/ coding function >0.50) Left Right DNA Coding Avg Start end end Strand Frame Prob Prob -------- -------- ---------- ----- ---- ---- List of Regions of interest (regions from stop to stop codon w/ a signal in between) LEnd REnd Strand Frame -------- -------- ----------- ----- 81 1172 direct fr 3 133 312 direct fr 1 411 794 complement fr 2 840 1205 complement fr 2 1136 1852 complement fr 1 -------------------- ABOUT THE MATRIX USED: For details on the model building procedure see: Besemer J. and Borodovsky M. "Heuristic approach to deriving models for gene finding" NAR, 1999, Vol. 27, No. 19, pp. 3911-3920