GENEMARK PREDICTIONS Sequence: gi|160872934|ref|NC_009998.1| Shewanella baltica OS195 plasmid pS19501, complete sequence Sequence file: NC_009998.fna Sequence length: 75605 GC Content: 42.66% Window length: 96 Window step: 12 Threshold value: 0.500 --- Matrix: - Matrix author: - Matrix order: 2 List of Open reading frames predicted as CDSs, shown with alternate starts (regions from start to stop codon w/ coding function >0.50) Left Right DNA Coding Avg Start end end Strand Frame Prob Prob -------- -------- ---------- ----- ---- ---- 2 640 complement fr 1 0.83 0.11 2 634 complement fr 1 0.85 0.22 2 535 complement fr 1 0.87 0.05 2 196 complement fr 1 0.75 0.35 573 3386 complement fr 2 0.89 0.96 573 3350 complement fr 2 0.89 0.25 573 3338 complement fr 2 0.89 0.03 573 3335 complement fr 2 0.89 0.04 3389 4777 complement fr 1 0.87 0.20 3389 4645 complement fr 1 0.92 0.16 3389 4582 complement fr 1 0.92 0.27 3389 4552 complement fr 1 0.92 0.50 4950 5387 complement fr 2 0.65 0.03 4950 5366 complement fr 2 0.66 0.02 4950 5360 complement fr 2 0.68 0.02 4950 5321 complement fr 2 0.72 0.78 4950 5279 complement fr 2 0.73 0.00 4950 5150 complement fr 2 0.69 0.06 4950 5093 complement fr 2 0.62 0.22 5401 6276 complement fr 3 0.82 0.17 5401 6168 complement fr 3 0.91 0.06 5401 6144 complement fr 3 0.91 0.17 5401 6135 complement fr 3 0.91 0.16 5401 5979 complement fr 3 0.89 0.16 6273 8090 complement fr 2 0.89 0.42 6273 7988 complement fr 2 0.88 0.06 6273 7841 complement fr 2 0.87 0.45 8087 8827 complement fr 1 0.73 0.15 8087 8770 complement fr 1 0.78 0.52 8087 8722 complement fr 1 0.81 0.03 8087 8689 complement fr 1 0.82 0.86 8087 8641 complement fr 1 0.81 0.03 8850 9902 complement fr 2 0.70 0.00 8850 9863 complement fr 2 0.73 0.14 8850 9818 complement fr 2 0.74 0.60 8850 9755 complement fr 2 0.76 0.04 8850 9722 complement fr 2 0.76 0.72 9850 10554 complement fr 3 0.84 0.03 9850 10533 complement fr 3 0.86 0.08 9850 10482 complement fr 3 0.90 0.72 9850 10473 complement fr 3 0.90 0.23 9850 10449 complement fr 3 0.89 0.05 10551 10985 complement fr 2 0.69 0.01 10551 10967 complement fr 2 0.73 0.04 10551 10922 complement fr 2 0.79 0.48 10551 10886 complement fr 2 0.82 0.08 10551 10871 complement fr 2 0.83 0.27 10551 10811 complement fr 2 0.79 0.06 10924 13512 complement fr 3 0.87 0.97 10924 13320 complement fr 3 0.88 0.10 10924 13308 complement fr 3 0.88 0.22 10924 13263 complement fr 3 0.88 0.62 13516 13959 complement fr 3 0.80 0.43 13516 13857 complement fr 3 0.80 0.09 13516 13830 complement fr 3 0.81 0.53 13992 15518 complement fr 2 0.93 0.89 13992 15425 complement fr 2 0.93 0.01 13992 15413 complement fr 2 0.93 0.02 15515 16333 complement fr 1 0.81 0.08 15515 16285 complement fr 1 0.86 0.36 15515 16279 complement fr 1 0.87 0.63 15515 16075 complement fr 1 0.86 0.12 15515 15997 complement fr 1 0.84 0.14 16333 16899 complement fr 3 0.81 0.64 16333 16818 complement fr 3 0.86 0.21 16333 16752 complement fr 3 0.85 0.08 16333 16683 complement fr 3 0.83 0.12 16940 17242 complement fr 1 0.53 0.30 16940 17170 complement fr 1 0.53 0.23 17246 17620 complement fr 1 0.52 0.60 17246 17515 complement fr 1 0.60 0.01 17246 17485 complement fr 1 0.65 0.37 17246 17467 complement fr 1 0.67 0.50 17246 17455 complement fr 1 0.68 0.86 18980 19711 direct fr 2 0.63 0.81 19079 19711 direct fr 2 0.66 0.40 19154 19711 direct fr 2 0.62 0.46 19157 19711 direct fr 2 0.62 0.35 20769 21968 direct fr 3 0.78 0.36 20778 21968 direct fr 3 0.79 0.77 20802 21968 direct fr 3 0.80 0.61 20811 21968 direct fr 3 0.81 0.38 21009 21968 direct fr 3 0.80 0.17 21968 23065 direct fr 2 0.88 0.55 21989 23065 direct fr 2 0.90 0.93 22241 23065 direct fr 2 0.91 0.07 22349 23065 direct fr 2 0.90 0.21 22367 23065 direct fr 2 0.90 0.08 23216 23785 direct fr 2 0.58 0.84 23252 23785 direct fr 2 0.59 0.16 23306 23785 direct fr 2 0.54 0.23 23582 23785 direct fr 2 0.78 0.79 23925 24443 direct fr 3 0.52 0.03 23943 24443 direct fr 3 0.53 0.06 23952 24443 direct fr 3 0.53 0.02 24589 27561 direct fr 1 0.76 0.04 24715 27561 direct fr 1 0.76 0.08 24850 27561 direct fr 1 0.76 0.20 25294 27561 direct fr 1 0.76 0.00 25462 27561 direct fr 1 0.77 0.03 28435 30594 direct fr 1 0.56 0.38 28591 30594 direct fr 1 0.58 0.56 28762 30594 direct fr 1 0.59 0.07 28816 30594 direct fr 1 0.57 0.04 30895 31527 direct fr 1 0.60 0.26 31003 31527 direct fr 1 0.71 0.38 31156 31527 direct fr 1 0.66 0.00 31243 31527 direct fr 1 0.58 0.20 31653 32036 direct fr 3 0.55 0.22 31785 32036 direct fr 3 0.67 0.54 31821 32036 direct fr 3 0.69 0.31 31842 32036 direct fr 3 0.66 0.45 32080 32961 complement fr 3 0.76 0.09 32080 32955 complement fr 3 0.76 0.04 32080 32733 complement fr 3 0.83 0.23 32080 32598 complement fr 3 0.80 0.04 32080 32490 complement fr 3 0.78 0.23 32985 36071 complement fr 2 0.81 0.19 32985 35918 complement fr 2 0.81 0.07 32985 35657 complement fr 2 0.81 0.01 32985 35588 complement fr 2 0.81 0.07 36394 37335 direct fr 1 0.65 0.26 36439 37335 direct fr 1 0.69 0.35 36580 37335 direct fr 1 0.71 0.00 36679 37335 direct fr 1 0.76 0.09 36691 37335 direct fr 1 0.76 0.39 37033 37335 direct fr 1 0.74 0.06 37487 37747 complement fr 1 0.63 0.39 37487 37648 complement fr 1 0.70 0.12 37917 38495 direct fr 3 0.62 0.17 37941 38495 direct fr 3 0.65 0.80 38064 38495 direct fr 3 0.70 0.40 38094 38495 direct fr 3 0.72 0.19 38229 38495 direct fr 3 0.68 0.43 38238 38495 direct fr 3 0.66 0.42 38496 39992 direct fr 3 0.68 0.12 38517 39992 direct fr 3 0.69 0.75 38682 39992 direct fr 3 0.68 0.04 38835 39992 direct fr 3 0.73 0.44 38862 39992 direct fr 3 0.73 0.27 38883 39992 direct fr 3 0.73 0.38 40641 41270 complement fr 2 0.79 0.97 40641 41102 complement fr 2 0.81 0.23 40641 40967 complement fr 2 0.79 0.56 40641 40928 complement fr 2 0.76 0.16 41871 42920 direct fr 3 0.74 0.70 41991 42920 direct fr 3 0.76 0.07 42324 42920 direct fr 3 0.71 0.16 42597 42920 direct fr 3 0.59 0.60 42917 44302 direct fr 2 0.61 0.28 42995 44302 direct fr 2 0.62 0.59 43016 44302 direct fr 2 0.61 0.13 43151 44302 direct fr 2 0.62 0.32 44292 44861 direct fr 3 0.51 0.26 44499 44861 direct fr 3 0.57 0.05 44523 44861 direct fr 3 0.59 0.05 44598 44861 direct fr 3 0.71 0.39 44718 44861 direct fr 3 0.63 0.08 44851 48030 direct fr 1 0.79 0.09 45016 48030 direct fr 1 0.80 0.22 45280 48030 direct fr 1 0.78 0.28 45349 48030 direct fr 1 0.78 0.18 48631 49404 direct fr 1 0.63 0.20 48985 49404 direct fr 1 0.63 0.44 48988 49404 direct fr 1 0.63 0.26 49099 49404 direct fr 1 0.60 0.09 49180 49404 direct fr 1 0.75 0.44 49243 49404 direct fr 1 0.73 0.01 51355 51789 direct fr 1 0.72 0.12 51502 51789 direct fr 1 0.78 0.70 51568 51789 direct fr 1 0.73 0.12 51577 51789 direct fr 1 0.74 0.44 51777 53033 direct fr 3 0.70 0.61 51825 53033 direct fr 3 0.72 0.19 51921 53033 direct fr 3 0.73 0.11 51975 53033 direct fr 3 0.73 0.55 52026 53033 direct fr 3 0.74 0.37 53864 53992 direct fr 2 0.67 0.68 54326 54562 direct fr 2 0.60 0.09 54392 54562 direct fr 2 0.72 0.58 54452 54562 direct fr 2 0.60 0.02 54519 54785 direct fr 3 0.59 0.66 54525 54785 direct fr 3 0.59 0.53 54669 54785 direct fr 3 0.61 0.42 54797 55162 direct fr 2 0.57 0.15 54989 55162 direct fr 2 0.54 0.04 55299 55583 direct fr 3 0.61 0.02 55416 55583 direct fr 3 0.72 0.03 55470 55583 direct fr 3 0.59 0.52 56877 57215 direct fr 3 0.63 0.17 57018 57215 direct fr 3 0.68 0.01 57081 57215 direct fr 3 0.58 0.23 57090 57215 direct fr 3 0.55 0.13 57693 58079 direct fr 3 0.79 0.30 57714 58079 direct fr 3 0.79 0.67 57726 58079 direct fr 3 0.78 0.15 58094 58327 direct fr 2 0.77 0.52 58190 58327 direct fr 2 0.67 0.43 58720 60594 direct fr 1 0.91 0.77 58846 60594 direct fr 1 0.92 0.01 58849 60594 direct fr 1 0.92 0.01 58876 60594 direct fr 1 0.92 0.77 58906 60594 direct fr 1 0.93 0.41 60719 61174 direct fr 2 0.76 0.89 60728 61174 direct fr 2 0.78 0.90 60758 61174 direct fr 2 0.85 0.23 60785 61174 direct fr 2 0.84 0.11 60872 61174 direct fr 2 0.80 0.08 61176 61664 direct fr 3 0.60 0.79 61209 61664 direct fr 3 0.63 0.23 61224 61664 direct fr 3 0.62 0.21 61296 61664 direct fr 3 0.55 0.01 61695 61916 direct fr 3 0.58 0.55 61719 61916 direct fr 3 0.65 0.83 61758 61916 direct fr 3 0.63 0.20 62159 62278 complement fr 1 0.53 0.68 62281 63210 direct fr 1 0.57 0.01 62299 63210 direct fr 1 0.58 0.02 62377 63210 direct fr 1 0.63 0.00 62587 63210 direct fr 1 0.74 0.00 62728 63210 direct fr 1 0.72 0.00 62767 63210 direct fr 1 0.72 0.84 63212 63613 direct fr 2 0.76 0.73 63227 63613 direct fr 2 0.78 0.94 63242 63613 direct fr 2 0.79 0.67 63347 63613 direct fr 2 0.72 0.14 63779 64051 direct fr 2 0.62 0.56 63806 64051 direct fr 2 0.71 0.51 63887 64051 direct fr 2 0.70 0.44 64036 64386 direct fr 1 0.68 0.13 64048 64386 direct fr 1 0.71 0.33 64051 64386 direct fr 1 0.71 0.28 64063 64386 direct fr 1 0.72 0.45 64129 64386 direct fr 1 0.74 0.36 64675 65979 direct fr 1 0.70 0.01 64693 65979 direct fr 1 0.72 0.01 64771 65979 direct fr 1 0.76 0.01 64981 65979 direct fr 1 0.86 0.00 65128 65979 direct fr 1 0.85 0.33 66028 66327 direct fr 1 0.71 0.71 66211 66327 direct fr 1 0.75 0.03 66886 67245 direct fr 1 0.76 0.75 66904 67245 direct fr 1 0.81 0.52 67266 73226 complement fr 2 0.95 0.19 67266 73139 complement fr 2 0.96 0.05 67266 73025 complement fr 2 0.96 0.04 67266 72986 complement fr 2 0.96 0.02 73285 73500 complement fr 3 0.52 0.20 73285 73464 complement fr 3 0.62 0.11 73285 73437 complement fr 3 0.69 0.25 73285 73377 complement fr 3 0.58 0.28 73285 73368 complement fr 3 0.53 0.09 73478 75604 complement fr 1 0.85 .... 73478 75529 complement fr 1 0.85 .... 73478 75508 complement fr 1 0.86 0.09 73478 75481 complement fr 1 0.87 0.50 List of Regions of interest (regions from stop to stop codon w/ a signal in between) LEnd REnd Strand Frame -------- -------- ----------- ----- 2 661 complement fr 1 573 3419 complement fr 2 3389 4783 complement fr 1 4774 4980 complement fr 3 4950 5435 complement fr 2 5401 6324 complement fr 3 6273 8165 complement fr 2 8087 8845 complement fr 1 8670 9116 direct fr 3 8850 9926 complement fr 2 9850 10557 complement fr 3 10551 11009 complement fr 2 10924 13518 complement fr 3 13096 13647 direct fr 1 13516 14019 complement fr 3 13992 15578 complement fr 2 15515 16339 complement fr 1 16333 16911 complement fr 3 16940 17248 complement fr 1 17246 17656 complement fr 1 17684 17941 complement fr 1 17974 18240 complement fr 3 18342 18533 direct fr 3 18971 19711 direct fr 2 20373 20609 complement fr 2 20748 21968 direct fr 3 21862 22122 complement fr 3 21950 23065 direct fr 2 23171 23785 direct fr 2 23877 24443 direct fr 3 24562 27561 direct fr 1 25386 25652 complement fr 2 28196 28366 direct fr 2 28357 30594 direct fr 1 30883 31527 direct fr 1 31617 32036 direct fr 3 32080 32973 complement fr 3 32985 36089 complement fr 2 36379 37335 direct fr 1 37424 37597 direct fr 2 37487 37750 complement fr 1 37911 38495 direct fr 3 38493 39992 direct fr 3 40004 40390 direct fr 2 40641 41279 complement fr 2 41859 42920 direct fr 3 42899 44302 direct fr 2 44247 44861 direct fr 3 44836 48030 direct fr 1 48628 49404 direct fr 1 49402 50811 direct fr 1 51145 51306 complement fr 3 51328 51789 direct fr 1 51756 53033 direct fr 3 53309 53992 direct fr 2 54050 54244 direct fr 2 54305 54562 direct fr 2 54510 54785 direct fr 3 54770 55162 direct fr 2 55197 55583 direct fr 3 55591 55779 direct fr 1 55788 56429 direct fr 3 56832 57215 direct fr 3 57133 57294 direct fr 1 57309 58079 direct fr 3 58037 58327 direct fr 2 58324 58497 complement fr 3 58699 60594 direct fr 1 60701 61174 direct fr 2 61146 61664 direct fr 3 61203 61532 complement fr 2 61674 61916 direct fr 3 62159 62329 complement fr 1 62199 62399 complement fr 2 62266 63210 direct fr 1 62328 62561 direct fr 3 63161 63613 direct fr 2 63767 64051 direct fr 2 63988 64386 direct fr 1 64553 64723 complement fr 1 64593 64793 complement fr 2 64660 65979 direct fr 1 66013 66327 direct fr 1 66853 67245 direct fr 1 67266 73241 complement fr 2 73285 73512 complement fr 3 73478 75604 complement fr 1 -------------------- ABOUT THE MATRIX USED: Training set derived by GeneMarkS, 4.6a Mon Nov 26 10:41:59 2007