GENEMARK PREDICTIONS Sequence: gi|158341329|ref|NC_009932.1| Acaryochloris marina MBIC11017 plasmid pREB7, complete sequence Sequence file: NC_009932.fna Sequence length: 155110 GC Content: 45.59% Window length: 96 Window step: 12 Threshold value: 0.500 --- Matrix: - Matrix author: - Matrix order: 2 List of Open reading frames predicted as CDSs, shown with alternate starts (regions from start to stop codon w/ coding function >0.50) Left Right DNA Coding Avg Start end end Strand Frame Prob Prob -------- -------- ---------- ----- ---- ---- 2 1120 complement fr 1 0.82 0.49 2 1117 complement fr 1 0.82 0.25 2 997 complement fr 1 0.85 0.23 2 949 complement fr 1 0.84 0.04 2 775 complement fr 1 0.93 0.07 3094 6993 complement fr 3 0.91 0.05 3094 6939 complement fr 3 0.92 0.00 3094 6891 complement fr 3 0.94 0.83 3094 6879 complement fr 3 0.94 0.46 3094 6669 complement fr 3 0.94 0.23 3094 6636 complement fr 3 0.94 0.14 7752 10820 direct fr 3 0.69 0.65 8337 10820 direct fr 3 0.69 0.01 8532 10820 direct fr 3 0.68 0.08 8604 10820 direct fr 3 0.68 0.42 11186 13273 complement fr 1 0.89 0.35 11186 13147 complement fr 1 0.90 0.03 11186 13054 complement fr 1 0.90 0.63 13351 14448 complement fr 3 0.93 0.68 13351 14277 complement fr 3 0.92 0.03 13351 14124 complement fr 3 0.91 0.12 14584 18465 complement fr 3 0.91 0.31 14584 18066 complement fr 3 0.92 0.01 14584 18063 complement fr 3 0.92 0.00 14584 18057 complement fr 3 0.92 0.01 18778 19305 direct fr 1 0.60 0.03 19024 19305 direct fr 1 0.75 0.55 19138 19305 direct fr 1 0.60 0.21 19144 19305 direct fr 1 0.57 0.06 21228 21578 direct fr 3 0.69 0.20 21309 21578 direct fr 3 0.77 0.13 21471 21578 direct fr 3 0.66 0.10 21489 21578 direct fr 3 0.62 0.01 21592 23472 direct fr 1 0.74 0.59 21736 23472 direct fr 1 0.74 0.21 21784 23472 direct fr 1 0.73 0.41 21862 23472 direct fr 1 0.72 0.08 23476 24447 direct fr 1 0.84 0.24 23521 24447 direct fr 1 0.88 0.35 23644 24447 direct fr 1 0.87 0.08 23683 24447 direct fr 1 0.86 0.35 24456 27323 direct fr 3 0.74 0.07 24753 27323 direct fr 3 0.74 0.02 24930 27323 direct fr 3 0.74 0.09 25185 27323 direct fr 3 0.74 0.22 27364 28242 direct fr 1 0.68 0.78 27460 28242 direct fr 1 0.69 0.54 27463 28242 direct fr 1 0.69 0.55 27490 28242 direct fr 1 0.69 0.12 28388 29206 direct fr 2 0.78 0.63 28421 29206 direct fr 2 0.81 0.66 28469 29206 direct fr 2 0.82 0.01 28472 29206 direct fr 2 0.82 0.06 28484 29206 direct fr 2 0.82 0.17 29346 29972 complement fr 2 0.72 0.22 29346 29960 complement fr 2 0.73 0.68 29346 29888 complement fr 2 0.76 0.75 29346 29861 complement fr 2 0.75 0.11 29346 29768 complement fr 2 0.71 0.38 30035 30130 complement fr 1 0.53 0.41 31357 31998 direct fr 1 0.66 0.55 31456 31998 direct fr 1 0.71 0.52 31537 31998 direct fr 1 0.68 0.89 31651 31998 direct fr 1 0.59 0.28 32079 32303 direct fr 3 0.52 0.19 32590 33879 complement fr 3 0.78 0.25 32590 33492 complement fr 3 0.82 0.03 32590 33447 complement fr 3 0.81 0.47 32590 33354 complement fr 3 0.80 0.91 34037 35593 complement fr 1 0.84 0.09 34037 35554 complement fr 1 0.87 0.05 34037 35458 complement fr 1 0.90 0.62 34037 35398 complement fr 1 0.89 0.25 34037 35344 complement fr 1 0.89 0.08 35765 36181 complement fr 1 0.53 0.19 35765 36139 complement fr 1 0.59 0.01 35765 36010 complement fr 1 0.67 0.79 35765 36004 complement fr 1 0.67 0.89 35765 35992 complement fr 1 0.66 0.91 38405 38989 complement fr 1 0.55 0.03 38405 38608 complement fr 1 0.58 0.18 38405 38539 complement fr 1 0.55 0.80 38405 38524 complement fr 1 0.53 0.81 39348 40058 direct fr 3 0.65 0.40 39456 40058 direct fr 3 0.75 0.66 39459 40058 direct fr 3 0.76 0.62 39462 40058 direct fr 3 0.76 0.57 39747 40058 direct fr 3 0.65 0.27 39756 40058 direct fr 3 0.65 0.15 39786 40058 direct fr 3 0.60 0.08 40512 41570 direct fr 3 0.91 0.94 40611 41570 direct fr 3 0.96 0.01 40626 41570 direct fr 3 0.96 0.00 40632 41570 direct fr 3 0.96 0.00 41567 43381 direct fr 2 0.82 0.13 41585 43381 direct fr 2 0.83 0.09 41615 43381 direct fr 2 0.84 0.25 41630 43381 direct fr 2 0.85 0.37 41636 43381 direct fr 2 0.85 0.87 41690 43381 direct fr 2 0.85 0.04 44110 45612 direct fr 1 0.63 0.01 44206 45612 direct fr 1 0.67 0.03 44218 45612 direct fr 1 0.67 0.01 44263 45612 direct fr 1 0.67 0.57 44401 45612 direct fr 1 0.68 0.28 44410 45612 direct fr 1 0.68 0.25 44485 45612 direct fr 1 0.70 0.35 46575 46736 complement fr 2 0.51 0.37 47860 49326 direct fr 1 0.78 0.74 47869 49326 direct fr 1 0.79 0.58 47917 49326 direct fr 1 0.80 0.03 47935 49326 direct fr 1 0.80 0.01 48079 49326 direct fr 1 0.84 0.04 48136 49326 direct fr 1 0.83 0.14 49505 50977 complement fr 1 0.50 0.08 53966 57721 complement fr 1 0.86 0.08 53966 57307 complement fr 1 0.90 0.78 53966 57292 complement fr 1 0.91 0.60 53966 57277 complement fr 1 0.91 0.20 53966 57118 complement fr 1 0.91 0.43 53966 56956 complement fr 1 0.91 0.04 53966 56779 complement fr 1 0.90 0.03 58248 59519 complement fr 2 0.53 0.08 58248 59327 complement fr 2 0.51 0.08 60766 61629 direct fr 1 0.81 0.06 60814 61629 direct fr 1 0.85 0.93 60892 61629 direct fr 1 0.83 0.20 61063 61629 direct fr 1 0.79 0.50 61714 62370 direct fr 1 0.67 0.03 61861 62370 direct fr 1 0.70 0.05 61867 62370 direct fr 1 0.70 0.02 61954 62370 direct fr 1 0.66 0.67 62382 65507 direct fr 3 0.89 0.96 62541 65507 direct fr 3 0.90 0.92 62622 65507 direct fr 3 0.90 0.49 65511 66656 direct fr 3 0.83 0.39 65877 66656 direct fr 3 0.91 0.09 66396 66656 direct fr 3 0.82 0.01 66558 66656 direct fr 3 0.54 0.05 65604 65753 complement fr 2 0.52 0.13 66481 67959 direct fr 1 0.85 0.00 66541 67959 direct fr 1 0.89 0.00 66700 67959 direct fr 1 0.94 0.08 66856 67959 direct fr 1 0.94 0.56 66877 67959 direct fr 1 0.94 0.38 68026 68505 direct fr 1 0.60 0.63 68071 68505 direct fr 1 0.66 0.23 68128 68505 direct fr 1 0.68 0.65 68200 68505 direct fr 1 0.61 0.11 68474 68926 direct fr 2 0.69 0.02 68498 68926 direct fr 2 0.72 0.06 68615 68926 direct fr 2 0.83 0.78 68642 68926 direct fr 2 0.81 0.27 68660 68926 direct fr 2 0.80 0.03 68923 70236 complement fr 3 0.76 0.49 68923 70233 complement fr 3 0.76 0.25 68923 70113 complement fr 3 0.77 0.23 68923 70065 complement fr 3 0.76 0.04 68923 69891 complement fr 3 0.82 0.07 68923 69867 complement fr 3 0.82 0.03 70458 70571 direct fr 3 0.98 0.15 70509 70571 direct fr 3 0.97 0.18 70605 71981 direct fr 3 0.91 0.49 70728 71981 direct fr 3 0.91 0.03 70815 71981 direct fr 3 0.93 0.54 72155 72649 direct fr 2 0.65 0.04 72287 72649 direct fr 2 0.69 0.04 72290 72649 direct fr 2 0.68 0.07 72308 72649 direct fr 2 0.66 0.03 74489 75244 direct fr 2 0.67 0.30 74504 75244 direct fr 2 0.68 0.53 74720 75244 direct fr 2 0.62 0.49 74840 75244 direct fr 2 0.54 0.45 75446 75985 complement fr 1 0.58 0.07 75446 75940 complement fr 1 0.64 0.02 75446 75844 complement fr 1 0.67 0.87 75446 75820 complement fr 1 0.65 0.14 75446 75814 complement fr 1 0.64 0.05 76222 76716 direct fr 1 0.64 0.07 76384 76716 direct fr 1 0.68 0.49 76447 76716 direct fr 1 0.66 0.23 76765 76869 direct fr 1 0.51 0.78 76774 76869 direct fr 1 0.51 0.29 77211 80411 direct fr 3 0.91 0.88 77430 80411 direct fr 3 0.91 0.84 77598 80411 direct fr 3 0.91 0.84 78144 80411 direct fr 3 0.89 0.03 80422 80802 direct fr 1 0.50 0.00 80689 80802 direct fr 1 0.51 0.06 81082 81291 complement fr 3 0.73 0.71 81082 81267 complement fr 3 0.72 0.55 81082 81201 complement fr 3 0.57 0.07 81466 82140 direct fr 1 0.74 0.01 81484 82140 direct fr 1 0.76 0.08 81703 82140 direct fr 1 0.81 0.16 81733 82140 direct fr 1 0.81 0.44 81742 82140 direct fr 1 0.81 0.59 82203 83048 direct fr 3 0.92 0.41 82290 83048 direct fr 3 0.92 0.08 82293 83048 direct fr 3 0.92 0.04 82302 83048 direct fr 3 0.92 0.05 83113 83988 direct fr 1 0.91 0.06 83125 83988 direct fr 1 0.92 0.02 83137 83988 direct fr 1 0.93 0.09 83140 83988 direct fr 1 0.93 0.54 83206 83988 direct fr 1 0.93 0.21 83272 83988 direct fr 1 0.93 0.14 84100 84312 direct fr 1 0.70 0.16 84190 84312 direct fr 1 0.52 0.36 84465 85496 complement fr 2 0.60 0.01 84465 85463 complement fr 2 0.62 0.09 84465 85397 complement fr 2 0.64 0.39 84465 85040 complement fr 2 0.63 0.14 84465 85022 complement fr 2 0.63 0.10 84465 84974 complement fr 2 0.63 0.15 85500 86318 complement fr 2 0.72 0.48 85500 86279 complement fr 2 0.76 0.70 85500 86204 complement fr 2 0.76 0.05 85500 86165 complement fr 2 0.77 0.63 86342 87181 complement fr 1 0.76 0.88 86342 87082 complement fr 1 0.79 0.08 86342 86932 complement fr 1 0.74 0.03 86342 86905 complement fr 1 0.73 0.05 87503 87649 direct fr 2 0.61 0.10 87909 89747 direct fr 3 0.89 0.08 87945 89747 direct fr 3 0.91 0.16 88023 89747 direct fr 3 0.92 0.24 88098 89747 direct fr 3 0.95 0.56 88335 89747 direct fr 3 0.95 0.08 88362 89747 direct fr 3 0.95 0.06 89737 90174 direct fr 1 0.79 0.99 89785 90174 direct fr 1 0.84 0.01 89881 90174 direct fr 1 0.79 0.75 89935 90174 direct fr 1 0.75 0.00 90897 92420 direct fr 3 0.94 0.88 90957 92420 direct fr 3 0.97 0.00 91002 92420 direct fr 3 0.96 0.25 91008 92420 direct fr 3 0.96 0.42 92697 92900 direct fr 3 0.56 0.56 92751 92900 direct fr 3 0.50 0.13 92760 92900 direct fr 3 0.50 0.23 93461 93871 complement fr 1 0.51 0.70 93461 93847 complement fr 1 0.53 0.82 93461 93826 complement fr 1 0.50 0.28 94060 97989 complement fr 3 0.95 0.83 94060 97890 complement fr 3 0.95 0.04 94060 97863 complement fr 3 0.94 0.02 98190 100454 direct fr 3 0.77 0.24 98379 100454 direct fr 3 0.80 0.24 98430 100454 direct fr 3 0.79 0.11 98445 100454 direct fr 3 0.79 0.07 100999 102054 direct fr 1 0.92 0.93 101029 102054 direct fr 1 0.95 0.05 101098 102054 direct fr 1 0.94 0.62 101227 102054 direct fr 1 0.94 0.12 102038 102460 direct fr 2 0.73 0.36 102047 102460 direct fr 2 0.73 0.24 102062 102460 direct fr 2 0.77 0.36 102152 102460 direct fr 2 0.78 0.01 102155 102460 direct fr 2 0.78 0.00 102167 102460 direct fr 2 0.78 0.00 102524 103213 direct fr 2 0.87 0.77 102584 103213 direct fr 2 0.91 0.05 102653 103213 direct fr 2 0.90 0.01 102827 103213 direct fr 2 0.90 0.39 103222 103488 direct fr 1 0.81 0.01 103890 104000 direct fr 3 0.54 0.70 104466 105380 direct fr 3 0.56 0.69 104475 105380 direct fr 3 0.56 0.49 104658 105380 direct fr 3 0.59 0.37 104775 105380 direct fr 3 0.56 0.43 106575 106958 direct fr 3 0.77 0.63 106632 106958 direct fr 3 0.88 0.46 106665 106958 direct fr 3 0.88 0.74 106680 106958 direct fr 3 0.87 0.27 107625 108473 direct fr 3 0.58 0.73 107628 108473 direct fr 3 0.58 0.69 107733 108473 direct fr 3 0.58 0.72 107841 108473 direct fr 3 0.57 0.20 108255 108473 direct fr 3 0.63 0.09 108267 108473 direct fr 3 0.63 0.02 108321 108473 direct fr 3 0.70 0.54 108357 108473 direct fr 3 0.68 0.43 109940 110383 direct fr 2 0.70 0.27 110003 110383 direct fr 2 0.79 0.68 110198 110383 direct fr 2 0.72 0.31 110288 110383 direct fr 2 0.59 0.56 110529 111731 direct fr 3 0.72 0.01 110616 111731 direct fr 3 0.77 0.31 110622 111731 direct fr 3 0.77 0.48 110694 111731 direct fr 3 0.76 0.00 110766 111731 direct fr 3 0.81 0.57 111771 112067 complement fr 2 0.51 0.80 111771 112028 complement fr 2 0.54 0.31 112409 112651 direct fr 2 0.74 0.01 112436 112651 direct fr 2 0.82 0.30 112523 112651 direct fr 2 0.95 0.01 112562 112651 direct fr 2 0.92 0.08 112571 112651 direct fr 2 0.92 0.11 113092 114828 direct fr 1 0.84 0.04 113134 114828 direct fr 1 0.86 0.69 113287 114828 direct fr 1 0.86 0.03 113311 114828 direct fr 1 0.86 0.01 113341 114828 direct fr 1 0.85 0.03 114569 115387 direct fr 2 0.75 0.05 114656 115387 direct fr 2 0.84 0.48 114692 115387 direct fr 2 0.86 0.44 114866 115387 direct fr 2 0.83 0.45 114962 115387 direct fr 2 0.82 0.39 116093 117244 direct fr 2 0.66 0.13 116222 117244 direct fr 2 0.65 0.00 116276 117244 direct fr 2 0.66 0.17 116372 117244 direct fr 2 0.71 0.13 116378 117244 direct fr 2 0.71 0.19 116402 117244 direct fr 2 0.72 0.05 116480 117244 direct fr 2 0.75 0.68 116534 117244 direct fr 2 0.74 0.21 118652 119029 direct fr 2 0.60 0.01 118868 119029 direct fr 2 0.73 0.04 118886 119029 direct fr 2 0.69 0.21 118892 119029 direct fr 2 0.69 0.32 118981 119481 direct fr 1 0.71 0.31 119080 119481 direct fr 1 0.84 0.95 119215 119481 direct fr 1 0.80 0.60 119227 119481 direct fr 1 0.80 0.32 119341 119481 direct fr 1 0.64 0.02 119489 120538 complement fr 1 0.72 0.40 119489 120460 complement fr 1 0.73 0.26 119489 120439 complement fr 1 0.73 0.27 119489 120223 complement fr 1 0.76 0.33 120581 121837 complement fr 1 0.71 0.07 120581 121738 complement fr 1 0.78 0.35 120581 121735 complement fr 1 0.78 0.44 120581 121648 complement fr 1 0.77 0.14 122465 122743 direct fr 2 0.69 0.74 122477 122743 direct fr 2 0.72 0.51 122651 122743 direct fr 2 0.64 0.15 123612 124205 direct fr 3 0.80 0.41 123690 124205 direct fr 3 0.88 0.67 123699 124205 direct fr 3 0.88 0.38 124023 124205 direct fr 3 0.68 0.15 124297 124524 complement fr 3 0.72 0.49 124297 124488 complement fr 3 0.66 0.28 125266 125679 complement fr 3 0.55 0.21 125266 125580 complement fr 3 0.62 0.11 125266 125484 complement fr 3 0.63 0.21 125757 126203 complement fr 2 0.63 0.93 125757 126164 complement fr 2 0.65 0.13 125757 126074 complement fr 2 0.56 0.03 125757 126029 complement fr 2 0.55 0.01 126597 126971 direct fr 3 0.85 0.28 126651 126971 direct fr 3 0.88 0.19 126804 126971 direct fr 3 0.81 0.88 127042 127419 direct fr 1 0.71 0.57 127183 127419 direct fr 1 0.74 0.17 127204 127419 direct fr 1 0.73 0.50 127434 128468 direct fr 3 0.76 0.05 127437 128468 direct fr 3 0.76 0.02 127485 128468 direct fr 3 0.79 0.91 127518 128468 direct fr 3 0.78 0.03 127620 128468 direct fr 3 0.81 0.44 127647 128468 direct fr 3 0.81 0.08 128876 129091 direct fr 2 0.53 0.43 128963 129091 direct fr 2 0.66 0.89 129276 129602 direct fr 3 0.88 0.54 129309 129602 direct fr 3 0.88 0.44 129312 129602 direct fr 3 0.88 0.46 129701 130081 direct fr 2 0.82 0.21 129773 130081 direct fr 2 0.86 0.04 129782 130081 direct fr 2 0.85 0.02 129809 130081 direct fr 2 0.84 0.04 130616 130930 direct fr 2 0.52 0.29 134106 134522 complement fr 2 0.53 0.31 134106 134498 complement fr 2 0.57 0.35 134106 134288 complement fr 2 0.64 0.95 134641 135072 direct fr 1 0.66 0.57 134806 135072 direct fr 1 0.75 0.00 134827 135072 direct fr 1 0.73 0.09 134866 135072 direct fr 1 0.72 0.81 135159 136334 direct fr 3 0.82 0.59 135192 136334 direct fr 3 0.82 0.07 135231 136334 direct fr 3 0.81 0.04 137634 137987 complement fr 2 0.82 0.89 137634 137948 complement fr 2 0.80 0.03 137634 137867 complement fr 2 0.73 0.10 138080 141193 direct fr 2 0.80 0.83 138389 141193 direct fr 2 0.84 0.33 138656 141193 direct fr 2 0.85 0.12 138731 141193 direct fr 2 0.85 0.49 141198 141383 complement fr 2 0.60 0.44 141473 141661 complement fr 1 0.69 0.23 141473 141604 complement fr 1 0.64 0.17 141473 141574 complement fr 1 0.52 0.08 141780 145484 complement fr 2 0.62 0.05 141780 145466 complement fr 2 0.63 0.03 141780 145373 complement fr 2 0.64 0.00 141780 144983 complement fr 2 0.68 0.04 141780 144764 complement fr 2 0.69 0.57 141780 143702 complement fr 2 0.66 0.02 141780 143594 complement fr 2 0.66 0.28 148771 149148 complement fr 3 0.82 0.69 148771 148992 complement fr 3 0.74 0.64 148771 148884 complement fr 3 0.50 0.18 149351 149464 complement fr 1 0.57 0.08 149859 154559 direct fr 3 0.95 0.01 149982 154559 direct fr 3 0.96 0.59 150063 154559 direct fr 3 0.96 0.10 150087 154559 direct fr 3 0.96 0.15 150204 154559 direct fr 3 0.96 0.23 List of Regions of interest (regions from stop to stop codon w/ a signal in between) LEnd REnd Strand Frame -------- -------- ----------- ----- 2 1123 complement fr 1 3094 7017 complement fr 3 7746 10820 direct fr 3 11186 13414 complement fr 1 13351 14571 complement fr 3 14584 18468 complement fr 3 18695 18970 direct fr 2 18733 19305 direct fr 1 19274 19474 direct fr 2 19642 19806 direct fr 1 21168 21578 direct fr 3 21559 23472 direct fr 1 23231 23497 complement fr 1 23470 24447 direct fr 1 24390 27323 direct fr 3 24859 25215 complement fr 3 26404 26583 direct fr 1 27069 27347 complement fr 2 27292 28242 direct fr 1 28379 29206 direct fr 2 29346 30008 complement fr 2 29830 30150 direct fr 1 30035 30331 complement fr 1 30329 30529 complement fr 1 30425 30649 direct fr 2 30585 31064 complement fr 2 31342 31998 direct fr 1 31977 32303 direct fr 3 32590 33972 complement fr 3 34037 35602 complement fr 1 35765 36244 complement fr 1 37151 38023 complement fr 1 38405 39016 complement fr 1 39312 40058 direct fr 3 40004 40300 direct fr 2 40506 41570 direct fr 3 41558 43381 direct fr 2 44077 45612 direct fr 1 45382 45573 complement fr 3 45664 46311 complement fr 3 45677 45823 complement fr 1 45939 46145 complement fr 2 46575 47582 complement fr 2 47809 49326 direct fr 1 49505 51043 complement fr 1 51226 52026 direct fr 1 51279 51605 complement fr 2 52303 53514 direct fr 1 53966 57925 complement fr 1 57320 57652 direct fr 2 58248 59525 complement fr 2 59467 59682 complement fr 3 60703 61629 direct fr 1 61705 62370 direct fr 1 61963 62166 complement fr 3 62376 65507 direct fr 3 63981 64298 complement fr 2 64770 65342 complement fr 2 65505 66656 direct fr 3 65604 65804 complement fr 2 66478 67959 direct fr 1 67927 68151 complement fr 3 68011 68505 direct fr 1 68453 68926 direct fr 2 68923 70239 complement fr 3 70290 70571 direct fr 3 70569 71981 direct fr 3 72143 72649 direct fr 2 73909 74370 direct fr 1 74429 75244 direct fr 2 75446 76078 complement fr 1 76171 76716 direct fr 1 76714 76869 direct fr 1 77184 80411 direct fr 3 78681 78848 complement fr 2 80386 80802 direct fr 1 81082 81480 complement fr 3 81460 82140 direct fr 1 82131 83048 direct fr 3 83032 83988 direct fr 1 83906 84085 direct fr 2 84046 84312 direct fr 1 84465 85502 complement fr 2 85500 86339 complement fr 2 86260 86487 complement fr 3 86342 87190 complement fr 1 87452 87649 direct fr 2 87879 89747 direct fr 3 89713 90174 direct fr 1 90876 92420 direct fr 3 92333 92503 direct fr 2 92631 92900 direct fr 3 93461 93907 complement fr 1 93560 93958 direct fr 2 94060 98040 complement fr 3 98181 100454 direct fr 3 99302 99625 complement fr 1 100572 101006 complement fr 2 100978 102054 direct fr 1 102029 102460 direct fr 2 102497 103213 direct fr 2 103147 103488 direct fr 1 103839 104000 direct fr 3 104191 104478 direct fr 1 104427 105380 direct fr 3 105121 105465 complement fr 3 105448 106062 direct fr 1 105776 105961 complement fr 1 106566 106958 direct fr 3 107601 108473 direct fr 3 108389 108577 complement fr 1 108486 108659 complement fr 2 109832 110383 direct fr 2 110445 111731 direct fr 3 111771 112091 complement fr 2 111774 112007 direct fr 3 112060 112239 complement fr 3 112382 112651 direct fr 2 113077 114828 direct fr 1 114521 115387 direct fr 2 115293 115547 complement fr 2 116060 117244 direct fr 2 117049 117219 direct fr 1 117362 118336 complement fr 1 118625 119029 direct fr 2 118975 119481 direct fr 1 119489 120550 complement fr 1 120581 121900 complement fr 1 122038 122241 direct fr 1 122207 122392 complement fr 1 122450 122743 direct fr 2 122741 122974 direct fr 2 123208 123360 direct fr 1 123603 124205 direct fr 3 124297 124665 complement fr 3 125266 125703 complement fr 3 125757 126221 complement fr 2 126525 126971 direct fr 3 126979 127419 direct fr 1 127410 128468 direct fr 3 127479 127667 complement fr 2 127995 128303 complement fr 2 128570 128848 direct fr 2 128846 129091 direct fr 2 129003 129602 direct fr 3 129587 130081 direct fr 2 130125 130487 direct fr 3 130146 130394 complement fr 2 130499 130930 direct fr 2 130628 130987 complement fr 1 130882 131124 direct fr 1 131107 131304 complement fr 3 131229 131564 direct fr 3 131374 131658 direct fr 1 131537 131866 direct fr 2 131942 132253 complement fr 1 132344 132481 complement fr 1 132571 132906 complement fr 3 134106 134549 complement fr 2 134629 135072 direct fr 1 134976 136334 direct fr 3 136082 136525 complement fr 1 136399 137544 complement fr 3 137634 138080 complement fr 2 138050 141193 direct fr 2 140528 140725 complement fr 1 141141 141419 direct fr 3 141198 141503 complement fr 2 141473 141697 complement fr 1 141780 145508 complement fr 2 143339 143494 complement fr 1 148771 149196 complement fr 3 149351 149533 complement fr 1 149642 149848 complement fr 1 149853 154559 direct fr 3 154712 154957 complement fr 1 POSSIBLE SEQUENCE FRAMESHIFTS DETECTED From To Frame Frame At base... ----- ----- ---------- 3 1 26472 +/- 11 bp (direct) 3 1 45768 +/- 11 bp (complement) 3 2 46056 +/- 11 bp (complement) 1 2 114672 +/- 11 bp (direct) 2 1 117084 +/- 11 bp (direct) -------------------- ABOUT THE MATRIX USED: Training set derived by GeneMarkS, 4.6a Tue Nov 20 12:51:00 2007