GENEMARK PREDICTIONS Sequence: gi|71725141|ref|NC_007274.1| Pseudomonas syringae pv. phaseolicola 1448A large plasmid, complete sequence Sequence file: NC_007274.fna Sequence length: 131950 GC Content: 54.11% Window length: 96 Window step: 12 Threshold value: 0.500 --- Matrix: - Matrix author: - Matrix order: 2 List of Open reading frames predicted as CDSs, shown with alternate starts (regions from start to stop codon w/ coding function >0.50) Left Right DNA Coding Avg Start end end Strand Frame Prob Prob -------- -------- ---------- ----- ---- ---- 304 1617 direct fr 1 0.76 0.46 385 1617 direct fr 1 0.79 0.21 523 1617 direct fr 1 0.77 0.27 544 1617 direct fr 1 0.76 0.19 1723 2325 complement fr 3 0.78 0.35 1723 2247 complement fr 3 0.77 0.30 1723 2238 complement fr 3 0.76 0.07 2383 2541 complement fr 3 0.58 0.06 2807 2995 direct fr 2 0.58 0.81 2995 3276 direct fr 1 0.62 0.96 3004 3276 direct fr 1 0.65 0.94 3178 3276 direct fr 1 0.51 0.77 3428 5089 complement fr 1 0.66 0.02 3428 5083 complement fr 1 0.67 0.01 3428 5044 complement fr 1 0.68 0.24 3428 5038 complement fr 1 0.69 0.25 3428 4963 complement fr 1 0.71 0.37 3428 4576 complement fr 1 0.76 0.02 3428 4507 complement fr 1 0.75 0.60 3428 4492 complement fr 1 0.75 0.37 5713 5955 complement fr 3 0.55 0.28 7018 9279 direct fr 1 0.57 0.00 7147 9279 direct fr 1 0.61 0.00 7219 9279 direct fr 1 0.63 0.01 7444 9279 direct fr 1 0.66 0.40 7630 9279 direct fr 1 0.70 0.14 7657 9279 direct fr 1 0.71 0.13 7687 9279 direct fr 1 0.72 0.01 7732 9279 direct fr 1 0.75 0.04 7789 9279 direct fr 1 0.77 0.84 7810 9279 direct fr 1 0.77 0.59 9395 10552 complement fr 1 0.51 0.21 9395 10540 complement fr 1 0.51 0.46 10759 11373 direct fr 1 0.58 0.27 10876 11373 direct fr 1 0.70 0.35 10906 11373 direct fr 1 0.70 0.20 11023 11373 direct fr 1 0.63 0.12 11270 12100 direct fr 2 0.71 0.00 11306 12100 direct fr 2 0.75 0.04 11336 12100 direct fr 2 0.77 0.38 11477 12100 direct fr 2 0.81 0.53 11576 12100 direct fr 2 0.81 0.22 11789 12100 direct fr 2 0.77 0.05 11801 12100 direct fr 2 0.76 0.03 12234 12815 complement fr 2 0.80 0.87 12234 12809 complement fr 2 0.80 0.73 12234 12686 complement fr 2 0.78 0.27 12234 12587 complement fr 2 0.71 0.01 12234 12455 complement fr 2 0.71 0.85 12926 13846 complement fr 1 0.67 0.01 12926 13810 complement fr 1 0.70 0.05 12926 13780 complement fr 1 0.71 0.38 12926 13639 complement fr 1 0.72 0.53 12926 13531 complement fr 1 0.77 0.27 17661 17933 complement fr 2 0.52 0.46 18418 18705 direct fr 1 0.64 0.62 18490 18705 direct fr 1 0.74 0.03 18511 18705 direct fr 1 0.71 0.17 18538 18705 direct fr 1 0.68 0.20 18767 19180 direct fr 2 0.63 0.50 18851 19180 direct fr 2 0.65 0.09 18881 19180 direct fr 2 0.62 0.73 18908 19180 direct fr 2 0.61 0.11 19463 19633 direct fr 2 0.68 0.18 19508 19633 direct fr 2 0.57 0.19 20461 20778 direct fr 1 0.50 0.07 20470 20778 direct fr 1 0.50 0.02 20539 20778 direct fr 1 0.57 0.28 20551 20778 direct fr 1 0.57 0.59 20578 20778 direct fr 1 0.53 0.01 20926 22221 complement fr 3 0.80 0.01 20926 22062 complement fr 3 0.82 0.13 20926 22032 complement fr 3 0.82 0.28 20926 22005 complement fr 3 0.81 0.04 22914 24863 complement fr 2 0.79 0.32 22914 24851 complement fr 2 0.80 0.58 22914 24848 complement fr 2 0.80 0.56 22914 24827 complement fr 2 0.81 0.34 22914 24821 complement fr 2 0.81 0.11 22914 24755 complement fr 2 0.80 0.25 25081 25578 direct fr 1 0.80 0.97 25126 25578 direct fr 1 0.80 0.07 25228 25578 direct fr 1 0.82 0.54 26340 28610 direct fr 3 0.73 0.24 26415 28610 direct fr 3 0.75 0.00 26526 28610 direct fr 3 0.78 0.81 26628 28610 direct fr 3 0.77 0.53 26631 28610 direct fr 3 0.77 0.48 28496 28783 complement fr 1 0.59 0.93 28496 28732 complement fr 1 0.60 0.08 28496 28711 complement fr 1 0.56 0.11 28496 28684 complement fr 1 0.51 0.16 29010 29360 direct fr 3 0.83 0.54 29112 29360 direct fr 3 0.82 0.22 29118 29360 direct fr 3 0.81 0.24 29196 29360 direct fr 3 0.74 0.52 29350 29727 complement fr 3 0.78 0.39 29350 29661 complement fr 3 0.77 0.06 29350 29622 complement fr 3 0.76 0.40 29724 29924 complement fr 2 0.70 0.78 29724 29858 complement fr 2 0.66 0.23 30016 30330 direct fr 1 0.55 0.21 30049 30330 direct fr 1 0.59 0.50 30106 30330 direct fr 1 0.52 0.25 30306 30635 direct fr 3 0.86 0.59 30309 30635 direct fr 3 0.86 0.28 30312 30635 direct fr 3 0.86 0.18 30647 30976 direct fr 2 0.60 0.00 30683 30976 direct fr 2 0.66 0.92 30761 30976 direct fr 2 0.67 0.21 30800 30976 direct fr 2 0.61 0.29 30803 30976 direct fr 2 0.61 0.30 31210 31914 complement fr 3 0.82 0.35 31210 31836 complement fr 3 0.81 0.30 31210 31827 complement fr 3 0.81 0.07 31972 32442 complement fr 3 0.77 0.79 31972 32409 complement fr 3 0.81 0.15 31972 32292 complement fr 3 0.74 0.02 31972 32145 complement fr 3 0.82 0.53 32654 32884 direct fr 2 0.59 0.77 32669 32884 direct fr 2 0.62 0.87 32705 32884 direct fr 2 0.64 0.13 32756 32884 direct fr 2 0.53 0.20 32786 32884 direct fr 2 0.52 0.36 32881 33513 direct fr 1 0.58 0.15 32974 33513 direct fr 1 0.62 0.43 32977 33513 direct fr 1 0.62 0.49 33001 33513 direct fr 1 0.63 0.41 33022 33513 direct fr 1 0.63 0.28 33091 33513 direct fr 1 0.61 0.46 34374 36467 complement fr 2 0.87 0.01 34374 36464 complement fr 2 0.87 0.01 34374 36452 complement fr 2 0.87 0.01 34374 36404 complement fr 2 0.90 0.42 34374 36299 complement fr 2 0.93 0.22 34374 36293 complement fr 2 0.93 0.59 34374 36197 complement fr 2 0.93 0.49 37785 38489 complement fr 2 0.79 0.35 37785 38411 complement fr 2 0.78 0.30 37785 38402 complement fr 2 0.78 0.07 38547 39017 complement fr 2 0.77 0.79 38547 38984 complement fr 2 0.81 0.15 38547 38867 complement fr 2 0.75 0.02 38547 38720 complement fr 2 0.84 0.53 39068 39901 complement fr 1 0.52 0.11 39068 39892 complement fr 1 0.53 0.43 39068 39700 complement fr 1 0.58 0.45 39068 39604 complement fr 1 0.52 0.51 39068 39547 complement fr 1 0.52 0.30 40090 40719 direct fr 1 0.71 0.31 40105 40719 direct fr 1 0.74 0.68 40186 40719 direct fr 1 0.72 0.34 40195 40719 direct fr 1 0.71 0.08 40237 40719 direct fr 1 0.68 0.28 41923 42357 direct fr 1 0.84 0.10 41926 42357 direct fr 1 0.84 0.12 41968 42357 direct fr 1 0.82 0.23 42815 43054 direct fr 2 0.70 0.77 42872 43054 direct fr 2 0.79 0.43 42935 43054 direct fr 2 0.73 0.22 43054 43464 direct fr 1 0.74 0.62 43159 43464 direct fr 1 0.79 0.45 43240 43464 direct fr 1 0.72 0.04 43249 43464 direct fr 1 0.70 0.04 43799 44503 complement fr 1 0.81 0.35 43799 44425 complement fr 1 0.80 0.30 43799 44416 complement fr 1 0.80 0.07 44561 45031 complement fr 1 0.78 0.79 44561 44998 complement fr 1 0.82 0.15 44561 44881 complement fr 1 0.77 0.02 44561 44734 complement fr 1 0.82 0.53 45646 48066 direct fr 1 0.70 0.00 45673 48066 direct fr 1 0.71 0.01 45793 48066 direct fr 1 0.73 0.72 45829 48066 direct fr 1 0.74 0.40 45874 48066 direct fr 1 0.74 0.21 46036 48066 direct fr 1 0.77 0.53 48770 48922 complement fr 1 0.57 0.63 48770 48907 complement fr 1 0.57 0.94 48770 48886 complement fr 1 0.50 0.40 48891 49118 complement fr 2 0.66 0.64 48891 49022 complement fr 2 0.60 0.68 49335 49613 direct fr 3 0.66 0.62 49386 49613 direct fr 3 0.75 0.33 49416 49613 direct fr 3 0.72 0.16 49434 49613 direct fr 3 0.71 0.09 49604 50485 direct fr 2 0.71 0.90 49856 50485 direct fr 2 0.71 0.11 49868 50485 direct fr 2 0.72 0.02 49979 50485 direct fr 2 0.79 0.29 50051 50485 direct fr 2 0.75 0.02 50054 50485 direct fr 2 0.75 0.02 50672 51670 direct fr 2 0.58 0.79 50696 51670 direct fr 2 0.59 0.04 50852 51670 direct fr 2 0.55 0.59 52693 55188 direct fr 1 0.52 0.01 52864 55188 direct fr 1 0.55 0.72 52936 55188 direct fr 1 0.55 0.01 53119 55188 direct fr 1 0.59 0.00 53185 55188 direct fr 1 0.61 0.31 53212 55188 direct fr 1 0.61 0.40 53446 55188 direct fr 1 0.66 0.09 53467 55188 direct fr 1 0.66 0.26 57374 58477 direct fr 2 0.58 0.63 57422 58477 direct fr 2 0.59 0.26 57428 58477 direct fr 2 0.59 0.06 57539 58477 direct fr 2 0.56 0.20 58752 59399 direct fr 3 0.69 0.28 58764 59399 direct fr 3 0.71 0.47 58788 59399 direct fr 3 0.72 0.66 58872 59399 direct fr 3 0.69 0.07 58935 59399 direct fr 3 0.65 0.13 59577 59765 direct fr 3 0.61 0.81 59765 60046 direct fr 2 0.62 0.96 59774 60046 direct fr 2 0.65 0.94 60198 61859 complement fr 2 0.66 0.02 60198 61853 complement fr 2 0.66 0.01 60198 61814 complement fr 2 0.68 0.24 60198 61808 complement fr 2 0.68 0.25 60198 61733 complement fr 2 0.71 0.37 60198 61346 complement fr 2 0.76 0.02 60198 61277 complement fr 2 0.74 0.60 60198 61262 complement fr 2 0.74 0.37 62483 62725 complement fr 1 0.56 0.28 63620 63904 complement fr 1 0.55 0.59 63620 63736 complement fr 1 0.57 0.12 63620 63730 complement fr 1 0.54 0.10 64354 64803 complement fr 3 0.50 0.47 64354 64770 complement fr 3 0.54 0.80 65278 65982 complement fr 3 0.81 0.35 65278 65904 complement fr 3 0.79 0.30 65278 65895 complement fr 3 0.79 0.07 66040 66510 complement fr 3 0.77 0.79 66040 66477 complement fr 3 0.81 0.15 66040 66360 complement fr 3 0.74 0.02 66040 66213 complement fr 3 0.82 0.53 66541 66930 complement fr 3 0.58 0.43 66541 66903 complement fr 3 0.62 0.04 66541 66801 complement fr 3 0.71 0.63 66541 66672 complement fr 3 0.54 0.23 66931 68553 complement fr 3 0.78 0.05 66931 68544 complement fr 3 0.79 0.14 66931 68511 complement fr 3 0.80 0.74 66931 68508 complement fr 3 0.80 0.79 66931 68496 complement fr 3 0.80 0.48 66931 68493 complement fr 3 0.80 0.17 66931 68415 complement fr 3 0.82 0.66 68971 70074 complement fr 3 0.57 0.78 68971 70026 complement fr 3 0.57 0.12 68971 70020 complement fr 3 0.57 0.05 68971 69909 complement fr 3 0.54 0.26 70227 71531 direct fr 3 0.75 0.07 70317 71531 direct fr 3 0.78 0.48 70347 71531 direct fr 3 0.77 0.48 70599 71531 direct fr 3 0.74 0.27 71644 72876 direct fr 1 0.82 0.70 71677 72876 direct fr 1 0.84 0.13 71794 72876 direct fr 1 0.83 0.02 71941 72876 direct fr 1 0.85 0.56 72979 74058 complement fr 3 0.74 0.78 72979 74043 complement fr 3 0.74 0.95 72979 73974 complement fr 3 0.73 0.26 72979 73944 complement fr 3 0.73 0.01 74169 74843 complement fr 2 0.89 0.62 74169 74741 complement fr 2 0.89 0.18 74169 74639 complement fr 2 0.86 0.19 74977 75099 complement fr 3 0.68 0.88 75056 75454 complement fr 1 0.80 0.68 75056 75442 complement fr 1 0.81 0.37 75056 75430 complement fr 1 0.81 0.32 75990 76154 complement fr 2 0.59 0.54 76913 77098 complement fr 1 0.73 0.10 76913 77095 complement fr 1 0.73 0.06 76913 77005 complement fr 1 0.53 0.18 77174 78076 complement fr 1 0.79 0.80 77174 78019 complement fr 1 0.79 0.19 77174 77875 complement fr 1 0.80 0.31 77174 77818 complement fr 1 0.83 0.77 77174 77806 complement fr 1 0.83 0.70 78073 78396 complement fr 3 0.72 0.39 78073 78345 complement fr 3 0.77 0.66 81131 82093 complement fr 1 0.85 0.47 81131 82084 complement fr 1 0.87 0.29 81131 81895 complement fr 1 0.88 0.60 81131 81751 complement fr 1 0.87 0.11 81131 81622 complement fr 1 0.84 0.06 82424 82672 direct fr 2 0.51 0.18 82520 82672 direct fr 2 0.55 0.18 82523 82672 direct fr 2 0.55 0.19 82685 83035 direct fr 2 0.57 0.59 84195 84359 direct fr 3 0.66 0.81 84470 85504 direct fr 2 0.74 0.60 84485 85504 direct fr 2 0.75 0.95 84554 85504 direct fr 2 0.74 0.34 84584 85504 direct fr 2 0.74 0.03 86076 88025 direct fr 3 0.78 0.35 86088 88025 direct fr 3 0.79 0.42 86091 88025 direct fr 3 0.79 0.44 86112 88025 direct fr 3 0.80 0.26 86118 88025 direct fr 3 0.80 0.18 86184 88025 direct fr 3 0.80 0.26 86193 88025 direct fr 3 0.80 0.36 88114 89217 direct fr 1 0.58 0.63 88162 89217 direct fr 1 0.60 0.26 88168 89217 direct fr 1 0.60 0.06 88279 89217 direct fr 1 0.56 0.16 89443 89865 direct fr 1 0.64 0.02 89545 89865 direct fr 1 0.67 0.05 89566 89865 direct fr 1 0.66 0.14 89575 89865 direct fr 1 0.66 0.42 89920 90222 direct fr 1 0.57 0.86 89935 90222 direct fr 1 0.60 0.71 89962 90222 direct fr 1 0.65 0.87 90043 90222 direct fr 1 0.56 0.15 91909 92565 complement fr 3 0.55 0.16 91909 92319 complement fr 3 0.70 0.56 91909 92280 complement fr 3 0.69 0.31 91909 92241 complement fr 3 0.67 0.45 92602 93666 complement fr 3 0.54 0.00 92602 93570 complement fr 3 0.57 0.11 92602 93537 complement fr 3 0.57 0.55 92602 93501 complement fr 3 0.56 0.11 93845 94888 complement fr 1 0.58 0.51 93845 94879 complement fr 1 0.58 0.25 93845 94768 complement fr 1 0.58 0.01 93845 94699 complement fr 1 0.57 0.53 93845 94681 complement fr 1 0.57 0.12 93995 94207 direct fr 2 0.54 0.45 94049 94207 direct fr 2 0.63 0.65 94055 94207 direct fr 2 0.63 0.68 98091 98240 direct fr 3 0.67 0.82 98100 98240 direct fr 3 0.67 0.38 98142 98240 direct fr 3 0.54 0.09 98340 98846 complement fr 2 0.70 0.07 98340 98756 complement fr 2 0.75 0.45 98340 98726 complement fr 2 0.73 0.37 99150 99995 direct fr 3 0.79 0.60 99165 99995 direct fr 3 0.80 0.93 99234 99995 direct fr 3 0.80 0.30 99264 99995 direct fr 3 0.80 0.03 99303 99995 direct fr 3 0.79 0.01 99339 99995 direct fr 3 0.83 0.64 99414 99995 direct fr 3 0.84 0.08 100022 100873 complement fr 1 0.82 0.05 100022 100750 complement fr 1 0.88 0.03 100022 100741 complement fr 1 0.88 0.02 100022 100738 complement fr 1 0.87 0.01 101391 101990 direct fr 3 0.83 0.53 101469 101990 direct fr 3 0.82 0.26 101478 101990 direct fr 3 0.81 0.12 105780 106397 complement fr 2 0.92 0.07 105780 106376 complement fr 2 0.91 0.04 105780 106310 complement fr 2 0.92 0.57 106665 106772 complement fr 2 0.54 0.67 107107 107472 complement fr 3 0.51 0.02 109179 110213 complement fr 2 0.75 0.78 109179 110198 complement fr 2 0.76 0.95 109179 110129 complement fr 2 0.75 0.26 109179 110099 complement fr 2 0.75 0.01 110324 110488 complement fr 1 0.59 0.46 110706 110840 complement fr 2 0.55 0.25 111873 112361 direct fr 3 0.74 0.60 112029 112361 direct fr 3 0.74 0.73 112080 112361 direct fr 3 0.72 0.07 112125 112361 direct fr 3 0.67 0.56 112367 112468 direct fr 2 0.90 0.11 112382 112468 direct fr 2 0.87 0.04 112693 113727 direct fr 1 0.75 0.60 112708 113727 direct fr 1 0.76 0.95 112777 113727 direct fr 1 0.75 0.34 112807 113727 direct fr 1 0.75 0.03 114025 120480 complement fr 3 0.86 0.02 114025 120336 complement fr 3 0.87 0.64 114025 120048 complement fr 3 0.88 0.61 114025 119922 complement fr 3 0.89 0.25 114025 119892 complement fr 3 0.89 0.53 121048 121680 complement fr 3 0.70 0.67 121048 121656 complement fr 3 0.72 0.79 121048 121509 complement fr 3 0.66 0.24 121048 121419 complement fr 3 0.59 0.31 121048 121383 complement fr 3 0.56 0.18 121721 122140 complement fr 1 0.70 0.64 121721 121993 complement fr 1 0.73 0.22 121721 121933 complement fr 1 0.67 0.02 121721 121918 complement fr 1 0.65 0.31 122137 122475 complement fr 3 0.52 0.00 122137 122430 complement fr 3 0.60 0.58 122137 122418 complement fr 3 0.63 0.15 122137 122394 complement fr 3 0.68 0.11 122137 122385 complement fr 3 0.71 0.09 122137 122358 complement fr 3 0.71 0.36 122137 122259 complement fr 3 0.51 0.08 124261 124968 complement fr 3 0.53 0.36 124261 124887 complement fr 3 0.54 0.02 124261 124857 complement fr 3 0.57 0.37 124261 124854 complement fr 3 0.57 0.33 124261 124821 complement fr 3 0.59 0.28 124261 124815 complement fr 3 0.59 0.24 124261 124653 complement fr 3 0.54 0.04 124261 124596 complement fr 3 0.61 0.73 124261 124581 complement fr 3 0.62 0.47 124261 124551 complement fr 3 0.61 0.11 125022 125942 direct fr 3 0.66 0.29 125028 125942 direct fr 3 0.66 0.14 125271 125942 direct fr 3 0.69 0.28 125277 125942 direct fr 3 0.69 0.28 125280 125942 direct fr 3 0.69 0.42 126280 126606 complement fr 3 0.51 0.78 126280 126603 complement fr 3 0.51 0.76 126280 126576 complement fr 3 0.57 0.08 126280 126498 complement fr 3 0.59 0.37 126280 126489 complement fr 3 0.57 0.68 127165 127443 direct fr 1 0.68 0.62 127216 127443 direct fr 1 0.77 0.33 127246 127443 direct fr 1 0.74 0.16 127264 127443 direct fr 1 0.72 0.09 127806 129761 direct fr 3 0.82 0.10 127833 129761 direct fr 3 0.83 0.26 127851 129761 direct fr 3 0.84 0.75 127860 129761 direct fr 3 0.84 0.86 127884 129761 direct fr 3 0.84 0.59 127887 129761 direct fr 3 0.84 0.43 127911 129761 direct fr 3 0.84 0.06 129758 130069 direct fr 2 0.73 0.24 129788 130069 direct fr 2 0.79 0.97 129872 130069 direct fr 2 0.82 0.07 129890 130069 direct fr 2 0.80 0.12 129932 130069 direct fr 2 0.75 0.22 130059 130607 direct fr 3 0.80 0.39 130164 130607 direct fr 3 0.88 0.07 130194 130607 direct fr 3 0.87 0.01 130278 130607 direct fr 3 0.84 0.00 List of Regions of interest (regions from stop to stop codon w/ a signal in between) LEnd REnd Strand Frame -------- -------- ----------- ----- 104 307 direct fr 2 298 1617 direct fr 1 1409 1591 direct fr 2 1723 2385 complement fr 3 1837 2493 direct fr 1 2383 2547 complement fr 3 2424 2648 complement fr 2 2774 2995 direct fr 2 2983 3276 direct fr 1 3429 3734 direct fr 3 3428 5092 complement fr 1 4602 5069 direct fr 3 5713 5970 complement fr 3 6871 9279 direct fr 1 7520 7924 complement fr 1 9204 9737 direct fr 3 9395 10798 complement fr 1 9989 10183 direct fr 2 10756 11373 direct fr 1 10907 12100 direct fr 2 12234 12851 complement fr 2 12926 13906 complement fr 1 13743 13913 complement fr 2 14050 14586 complement fr 3 16570 16905 complement fr 3 17303 17575 complement fr 1 17661 17969 complement fr 2 18403 18705 direct fr 1 18740 19180 direct fr 2 19153 19416 complement fr 3 19205 19498 complement fr 1 19229 19633 direct fr 2 20347 20778 direct fr 1 20926 22296 complement fr 3 20932 22176 direct fr 1 22233 22712 complement fr 2 22914 24881 complement fr 2 24559 24810 complement fr 3 25009 25578 direct fr 1 25850 26065 complement fr 1 26244 28610 direct fr 3 28496 28810 complement fr 1 28932 29360 direct fr 3 29350 29799 complement fr 3 29724 29963 complement fr 2 29968 30330 direct fr 1 30237 30635 direct fr 3 30629 30976 direct fr 2 30870 31130 complement fr 2 31210 31974 complement fr 3 31426 32082 direct fr 1 31972 32463 complement fr 3 32557 32913 complement fr 3 32624 32884 direct fr 2 32830 33513 direct fr 1 33196 33561 complement fr 3 34374 36482 complement fr 2 37268 37636 complement fr 1 37785 38549 complement fr 2 37917 38657 direct fr 3 38547 39038 complement fr 2 39068 39925 complement fr 1 40051 40719 direct fr 1 40592 40891 complement fr 1 40952 41305 direct fr 2 41253 41573 direct fr 3 41791 42357 direct fr 1 42782 43054 direct fr 2 43045 43464 direct fr 1 43213 43590 complement fr 3 43462 43626 direct fr 1 43799 44563 complement fr 1 43931 44671 direct fr 2 44561 45052 complement fr 1 45637 48066 direct fr 1 46615 47007 complement fr 3 47506 47775 complement fr 3 48033 48668 complement fr 2 48336 48623 direct fr 3 48770 48991 complement fr 1 48891 49187 complement fr 2 49314 49613 direct fr 3 49556 50485 direct fr 2 49761 50003 complement fr 2 50633 51670 direct fr 2 51895 52659 direct fr 1 52672 55188 direct fr 1 55163 55630 direct fr 2 55350 55583 direct fr 3 55675 56265 direct fr 1 56329 56637 direct fr 1 57332 58477 direct fr 2 58713 59399 direct fr 3 59238 59453 complement fr 2 59544 59765 direct fr 3 59753 60046 direct fr 2 60199 60504 direct fr 1 60198 61862 complement fr 2 61372 61839 direct fr 1 61829 62146 complement fr 1 62483 62740 complement fr 1 63212 63400 direct fr 2 63620 63919 complement fr 1 64291 64575 direct fr 1 64354 64815 complement fr 3 65278 66042 complement fr 3 65410 66150 direct fr 1 66040 66531 complement fr 3 66541 66933 complement fr 3 66931 68568 complement fr 3 66961 67467 direct fr 1 68971 70116 complement fr 3 70203 71531 direct fr 3 71623 72876 direct fr 1 72979 74100 complement fr 3 74169 74909 complement fr 2 74620 74979 complement fr 3 74977 75150 complement fr 3 75056 75604 complement fr 1 75524 75688 direct fr 2 75990 76673 complement fr 2 76913 77176 complement fr 1 77174 78142 complement fr 1 77678 77953 direct fr 2 78073 78411 complement fr 3 81131 82114 complement fr 1 82406 82672 direct fr 2 82682 83035 direct fr 2 83810 84118 direct fr 2 83824 84039 direct fr 1 84132 84359 direct fr 3 84428 85504 direct fr 2 86058 88025 direct fr 3 86129 86380 direct fr 2 88072 89217 direct fr 1 89215 89865 direct fr 1 89914 90222 direct fr 1 90207 90500 direct fr 3 90321 90461 complement fr 2 90704 90934 complement fr 1 90889 91161 complement fr 3 91331 91954 complement fr 1 91397 91810 direct fr 2 91909 92580 complement fr 3 92602 93888 complement fr 3 93361 93621 direct fr 1 93845 94909 complement fr 1 93965 94207 direct fr 2 94897 95925 complement fr 3 95536 95727 direct fr 1 97622 98182 direct fr 2 97950 98240 direct fr 3 98340 98870 complement fr 2 99108 99995 direct fr 3 100022 100879 complement fr 1 101172 101333 direct fr 3 101223 101963 complement fr 2 101331 101990 direct fr 3 101725 102354 complement fr 3 102471 102650 complement fr 2 104132 104287 direct fr 2 104512 104727 direct fr 1 104615 104920 direct fr 2 104814 105518 complement fr 2 105780 106565 complement fr 2 106474 106746 direct fr 1 106516 106686 complement fr 3 106665 106829 complement fr 2 107107 108750 complement fr 3 108068 108241 direct fr 2 108428 108730 direct fr 2 109179 110255 complement fr 2 110324 110551 complement fr 1 110410 111642 direct fr 1 110706 110927 complement fr 2 111627 111926 complement fr 2 111867 112361 direct fr 3 112004 112468 direct fr 2 112466 112582 direct fr 2 112651 113727 direct fr 1 114025 120516 complement fr 3 114178 114447 direct fr 1 119937 120449 complement fr 2 120489 120830 complement fr 2 121024 121365 direct fr 1 121048 121686 complement fr 3 121721 122143 complement fr 1 122137 122511 complement fr 3 122817 123563 direct fr 3 123985 124539 direct fr 1 124261 125001 complement fr 3 125007 125942 direct fr 3 125550 125948 complement fr 2 125935 126264 complement fr 3 126280 126621 complement fr 3 127144 127443 direct fr 1 127386 127658 direct fr 3 127526 127822 complement fr 1 127562 127957 direct fr 2 127773 129761 direct fr 3 129556 129798 complement fr 3 129752 130069 direct fr 2 130035 130607 direct fr 3 130605 131363 direct fr 3 130998 131276 complement fr 2 131306 131707 direct fr 2 POSSIBLE SEQUENCE FRAMESHIFTS DETECTED From To Frame Frame At base... ----- ----- ---------- 1 2 1440 +/- 11 bp (direct) 2 3 2496 +/- 11 bp (complement) 2 3 24684 +/- 11 bp (complement) 1 3 30252 +/- 11 bp (direct) 3 2 55500 +/- 11 bp (direct) 3 2 74856 +/- 11 bp (complement) 3 2 86256 +/- 11 bp (direct) 2 3 98088 +/- 11 bp (direct) 3 2 112284 +/- 11 bp (direct) 3 2 120204 +/- 11 bp (complement) 2 3 127824 +/- 11 bp (direct) -------------------- ABOUT THE MATRIX USED: Training set derived by GeneMarkS, 4.6a Fri Apr 20 19:17:05 2007