#This is a sample file distributed with Galaxy that enables tools #to use a directory of SRMA indexed sequences data files. You will need #to create these data files and then create a srma_index.loc file #similar to this one (store it in this directory) that points to #the directories in which those files are stored. The srma_index.loc #file has this format (longer white space is the TAB character): # # # #So, for example, if you had hg18 indexed and stored in #/depot/data2/galaxy/srma/hg18/, #then the srma_index.loc entry would look like this: # #hg18 hg18 hg18 Pretty /depot/data2/galaxy/srma/hg18/hg18.fa # #and your /depot/data2/galaxy/srma/hg18/ directory #would contain the following three files: #hg18.fa #hg18.dict #hg18.fa.fai # #The dictionary file for each reference (ex. hg18.dict) must be #created via Picard (http://picard.sourceforge.net). Note that #the dict file does not have the .fa extension although the #path list in the loc file does include it. # hg_g1k_v37 hg_g1k_v37 Human (Homo sapiens) (b37): hg_g1k_v37 /cvmfs/data.galaxyproject.org/byhand/hg_g1k_v37/picard_index/hg_g1k_v37.fa