#This file lists the locations and dbkeys of all the fasta files #under the "genome" directory (a directory that contains a directory #for each build). The script extract_fasta.py will generate the file #all_fasta.loc. This file has the format (white space characters are #TAB characters): # # # #So, all_fasta.loc could look something like this: # #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa # #Your all_fasta.loc file should contain an entry for each individual #fasta file. So there will be multiple fasta files for each build, #such as with hg19 above. # Araly1 Araly1 Arabidopsis lyrata: Araly1 /cvmfs/data.galaxyproject.org/byhand/Araly1/seq/Araly1.fa Arabidopsis_thaliana_TAIR10 Arabidopsis_thaliana_TAIR10 Arabidopsis thaliana: Arabidopsis_thaliana_TAIR10 /cvmfs/data.galaxyproject.org/byhand/Arabidopsis_thaliana_TAIR10/seq/Arabidopsis_thaliana_TAIR10.fa Arabidopsis_thaliana_TAIR9 arabidopsis Arabidopsis thaliana: Arabidopsis_thaliana_TAIR9 /cvmfs/data.galaxyproject.org/byhand/Arabidopsis_thaliana_TAIR9/seq/Arabidopsis_thaliana_TAIR9.fa dasNov1 dasNov1 Armadillo (Dasypus novemcinctus): dasNov1 /cvmfs/data.galaxyproject.org/byhand/dasNov1/seq/dasNov1.fa papHam1 papHam1 Baboon (Papio anubis): papHam1 /cvmfs/data.galaxyproject.org/byhand/papHam1/seq/papHam1.fa baciSubt baciSubt Bacillus subtilis subsp. subtilis str. 168: baciSubt /cvmfs/data.galaxyproject.org/byhand/microbes/baciSubt/seq/baciSubt.fa bordBron bordBron Bordetella bronchiseptica str. RB50: bordBron /cvmfs/data.galaxyproject.org/byhand/microbes/bordBron/seq/bordBron.fa borEut13 borEut13 Boreoeutherian: borEut13 /cvmfs/data.galaxyproject.org/byhand/borEut13/seq/borEut13.fa melUnd1 melUnd1 Budgerigar (Melopsittacus undulatus): melUnd1 /cvmfs/data.galaxyproject.org/byhand/melUnd1/seq/melUnd1.fa burkPseu_1106A burkPseu_1106A Burkholderia pseudomallei str. 1106a: burkPseu_1106A /cvmfs/data.galaxyproject.org/byhand/microbes/burkPseu_1106A/seq/burkPseu_1106A.fa burkPseu_1710B 13954 Burkholderia pseudomallei str. 1710b: /cvmfs/data.galaxyproject.org/byhand/microbes/13954/seq/13954.fa burkPseu_668 13953 Burkholderia pseudomallei str. 668: /cvmfs/data.galaxyproject.org/byhand/microbes/13953/seq/13953.fa burkPseu_K96243 178 Burkholderia pseudomallei str. K96243: /cvmfs/data.galaxyproject.org/byhand/microbes/178/seq/178.fa otoGar1 otoGar1 Bushbaby (Otolemur garnetti): otoGar1 /cvmfs/data.galaxyproject.org/byhand/otoGar1/seq/otoGar1.fa otoGar3 otoGar3 Bushbaby (Otolemur garnetti): otoGar3 /cvmfs/data.galaxyproject.org/byhand/otoGar3/seq/otoGar3.fa caePb1 caePb1 Caenorhabditis brenneri: caePb1 /cvmfs/data.galaxyproject.org/byhand/caePb1/seq/caePb1.fa caePb2 caePb2 Caenorhabditis brenneri: caePb2 /cvmfs/data.galaxyproject.org/byhand/caePb2/seq/caePb2.fa caePb3 caePb3 Caenorhabditis brenneri: caePb3 /cvmfs/data.galaxyproject.org/byhand/caePb3/seq/caePb3.fa cb3canon cb3 Caenorhabditis briggsae: cb3 Canonical /cvmfs/data.galaxyproject.org/byhand/cb3/seq/cb3canon.fa cb3full cb3 Caenorhabditis briggsae: cb3 Full /cvmfs/data.galaxyproject.org/byhand/cb3/seq/cb3full.fa caeJap1 caeJap1 Caenorhabditis japonica: caeJap1 /cvmfs/data.galaxyproject.org/byhand/caeJap1/seq/caeJap1.fa caeJap2 caeJap2 Caenorhabditis japonica: caeJap2 /cvmfs/data.galaxyproject.org/byhand/caeJap2/seq/caeJap2.fa caeJap3 caeJap3 Caenorhabditis japonica: caeJap3 /cvmfs/data.galaxyproject.org/byhand/caeJap3/seq/caeJap3.fa caeJap4 caeJap4 Caenorhabditis japonica: caeJap4 /cvmfs/data.galaxyproject.org/byhand/caeJap4/seq/caeJap4.fa caeRem1 caeRem1 Caenorhabditis remanei: caeRem1 /cvmfs/data.galaxyproject.org/byhand/caeRem1/seq/caeRem1.fa caeRem2 caeRem2 Caenorhabditis remanei: caeRem2 /cvmfs/data.galaxyproject.org/byhand/caeRem2/seq/caeRem2.fa caeRem3 caeRem3 Caenorhabditis remanei: caeRem3 /cvmfs/data.galaxyproject.org/byhand/caeRem3/seq/caeRem3.fa caeRem4 caeRem4 Caenorhabditis remanei: caeRem4 /cvmfs/data.galaxyproject.org/byhand/caeRem4/seq/caeRem4.fa felCat3 felCat3 Cat (Felis catus): felCat3 /cvmfs/data.galaxyproject.org/byhand/felCat3/seq/felCat3.fa felCat4canon felCat4 Cat (Felis catus): felCat4 Canonical /cvmfs/data.galaxyproject.org/byhand/felCat4/seq/felCat4canon.fa felCat4 felCat4 Cat (Felis catus): felCat4 Full /cvmfs/data.galaxyproject.org/byhand/felCat4/seq/felCat4.fa felCat5 felCat5 Cat (Felis catus): felCat5 /cvmfs/data.galaxyproject.org/byhand/felCat5/seq/felCat5.fa ce2 ce2 C. elegans (WS120): ce2 /cvmfs/data.galaxyproject.org/byhand/ce2/seq/ce2.fa ce3 ce3 C. elegans (WS140): ce3 /cvmfs/data.galaxyproject.org/byhand/ce3/seq/ce3.fa ce4 ce4 C. elegans (WS170): ce4 /cvmfs/data.galaxyproject.org/byhand/ce4/seq/ce4.fa ce5 ce5 C. elegans (WS180): ce5 /cvmfs/data.galaxyproject.org/byhand/ce5/seq/ce5.fa ce6 ce6 C. elegans (WS190): ce6 /cvmfs/data.galaxyproject.org/byhand/ce6/seq/c6.fa ce7 ce7 C. elegans (WS200): ce7 /cvmfs/data.galaxyproject.org/byhand/ce7/seq/ce7.fa ce8 ce8 C. elegans (WS204): ce8 /cvmfs/data.galaxyproject.org/byhand/ce8/seq/ce8.fa ce9 ce9 C. elegans (WS210): ce9 /cvmfs/data.galaxyproject.org/byhand/ce9/seq/ce9.fa ce10 ce10 C. elegans (WS220): ce10 /cvmfs/data.galaxyproject.org/byhand/ce10/seq/ce10.fa galGal2canon galGal2 Chicken (Gallus gallus): galGal2 Canonical /cvmfs/data.galaxyproject.org/byhand/galGal2/seq/galGal2canon.fa galGal2 galGal2 Chicken (Gallus gallus): galGal2 Full /cvmfs/data.galaxyproject.org/byhand/galGal2/seq/galGal2.fa galGal3canon galGal3 Chicken (Gallus gallus): galGal3 Canonical /cvmfs/data.galaxyproject.org/byhand/galGal3/seq/galGal3canon.fa galGal3 galGal3 Chicken (Gallus gallus): galGal3 Full /cvmfs/data.galaxyproject.org/byhand/galGal3/seq/galGal3.fa galGal4 galGal4 Chicken (Gallus gallus): galGal4 /cvmfs/data.galaxyproject.org/byhand/galGal4/seq/galGal4.fa panTro1canon panTro1 Chimpanzee (Pan troglodytes): panTro1 Canonical /cvmfs/data.galaxyproject.org/byhand/panTro1/seq/panTro1canon.fa panTro1 panTro1 Chimpanzee (Pan troglodytes): panTro1 Full /cvmfs/data.galaxyproject.org/byhand/panTro1/seq/panTro1.fa panTro2canon panTro2 Chimpanzee (Pan troglodytes): panTro2 Canonical /cvmfs/data.galaxyproject.org/byhand/panTro2/seq/panTro2canon.fa panTro2 panTro2 Chimpanzee (Pan troglodytes): panTro2 Full /cvmfs/data.galaxyproject.org/byhand/panTro2/seq/panTro2.fa panTro3canon panTro3 Chimpanzee (Pan troglodytes): panTro3 Canonical /cvmfs/data.galaxyproject.org/byhand/panTro3/seq/panTro3canon.fa panTro3full panTro3 Chimpanzee (Pan troglodytes): panTro3 Full /cvmfs/data.galaxyproject.org/byhand/panTro3/seq/panTro3full.fa panTro4 panTro4 Chimpanzee (Pan troglodytes): panTro4 /cvmfs/data.galaxyproject.org/byhand/panTro4/seq/panTro4.fa ci2canon ci2 Ciona intestinalis: ci2 Canonical /cvmfs/data.galaxyproject.org/byhand/ci2/seq/ci2canon.fa ci2full ci2 Ciona intestinalis: ci2 Full /cvmfs/data.galaxyproject.org/byhand/ci2/seq/ci2full.fa sorAra1 sorAra1 Common Shrew (Sorex araneus): sorAra1 /cvmfs/data.galaxyproject.org/byhand/sorAra1/seq/sorAra1.fa bosTau2 bosTau2 Cow (Bos taurus): bosTau2 /cvmfs/data.galaxyproject.org/byhand/bosTau2/seq/bosTau2.fa bosTau3 bosTau3 Cow (Bos taurus): bosTau3 /cvmfs/data.galaxyproject.org/byhand/bosTau3/seq/bosTau3.fa bosTau4 bosTau4 Cow (Bos taurus): bosTau4 /cvmfs/data.galaxyproject.org/byhand/bosTau4/seq/bosTau4.fa bosTau5 bosTau5 Cow (Bos taurus): bosTau5 /cvmfs/data.galaxyproject.org/byhand/bosTau5/seq/bosTau5.fa bosTau6 bosTau6 Cow (Bos taurus): bosTau6 /cvmfs/data.galaxyproject.org/byhand/bosTau6/seq/bosTau6.fa bosTau7 bosTau7 Cow (Bos taurus): bosTau7 /cvmfs/data.galaxyproject.org/byhand/bosTau7/seq/bosTau7.fa bosTauMd3 bosTauMd3 Cow (Bos taurus): bosTauMd3 /cvmfs/data.galaxyproject.org/byhand/bosTauMd3/seq/bosTauMd3.fa IscaW1 IscaW1 Deer Tick (Ixodes scapularis): IscaW1 /cvmfs/data.galaxyproject.org/byhand/IscaW1/seq/IscaW1.fa canFam1 canFam1 Dog (Canis lupus familiaris): canFam1 /cvmfs/data.galaxyproject.org/byhand/canFam1/seq/canFam1.fa canFam2 canFam2 Dog (Canis lupus familiaris): canFam2 /cvmfs/data.galaxyproject.org/byhand/canFam2/seq/canFam2.fa canFam3 canFam3 Dog (Canis lupus familiaris): canFam3 /cvmfs/data.galaxyproject.org/byhand/canFam3/seq/canFam3.fa turTru2 turTru2 Dolphin (Tursiops truncatus): turTru2 /cvmfs/data.galaxyproject.org/byhand/turTru2/seq/turTru2.fa loxAfr1 loxAfr1 Elephant (Loxodonta africana africana): loxAfr1 /cvmfs/data.galaxyproject.org/byhand/loxAfr1/seq/loxAfr1.fa loxAfr3 loxAfr3 Elephant (Loxodonta africana africana): loxAfr3 /cvmfs/data.galaxyproject.org/byhand/loxAfr3/seq/loxAfr3.fa ente638 ente638 Enterobacter sp. 638: ente638 /cvmfs/data.galaxyproject.org/byhand/microbes/ente638/seq/ente638.fa eschColi_APEC_O1 eschColi_APEC_O1 Escherichia coli (APEC O1): eschColi_APEC_O1 /cvmfs/data.galaxyproject.org/byhand/microbes/eschColi_APEC_O1/seq/eschColi_APEC_O1.fa eschColi_CFT073 eschColi_CFT073 Escherichia coli (CFT073): eschColi_CFT073 /cvmfs/data.galaxyproject.org/byhand/microbes/eschColi_CFT073/seq/eschColi_CFT073.fa eschColi_K12_DH10B 20079 Escherichia coli (str. K-12 substr. DH10B): 20079 /cvmfs/data.galaxyproject.org/byhand/microbes/20079/seq/20079.fa eschColi_K12 eschColi_K12 Escherichia coli (str. K-12 substr. MG1655): eschColi_K12 /cvmfs/data.galaxyproject.org/byhand/microbes/eschColi_K12/seq/eschColi_K12.fa eschColi_K12_W3110 16351 Escherichia coli (str. K-12 substr. W3110): 16351 /cvmfs/data.galaxyproject.org/byhand/microbes/16351/seq/16351.fa eschColi_O157H7_EC4115 eschColi_EC4115 Escherichia coli (str. O157H7 substr. EC4115): eschColi_EC4115 /cvmfs/data.galaxyproject.org/byhand/microbes/eschColi_EC4115/seq/eschColi_EC4115.fa eschColi_O157H7_EDL933 259 Escherichia coli (str. O157H7 substr. EDL933): 259 /cvmfs/data.galaxyproject.org/byhand/microbes/259/seq/259.fa eschColi_O157H7 eschColi_O157H7 Escherichia coli (str. O157H7 substr. Sakai): eschColi_O157H7 /cvmfs/data.galaxyproject.org/byhand/microbes/eschColi_O157H7/seq/eschColi_O157H7.fa eschColi_O157H7_TW14359 eschColi_TW14359 Escherichia coli (str. O157H7 substr. TW14359): eschColi_TW14359 /cvmfs/data.galaxyproject.org/byhand/microbes/eschColi_TW14359/seq/eschColi_TW14359.fa Schizosaccharomyces_pombe_1.1 Schizosaccharomyces_pombe_1.1 Fission Yeast (Schizosaccharomyces pombe): Schizosaccharomyces_pombe_1.1 /cvmfs/data.galaxyproject.org/byhand/Schizosaccharomyces_pombe_1.1/seq/Schizosaccharomyces_pombe_1.1.fa xenTro1 xenTro1 Frog (Xenopus tropicalis): xenTro1 /cvmfs/data.galaxyproject.org/byhand/xenTro1/seq/xenTro1.fa xenTro2 xenTro2 Frog (Xenopus tropicalis): xenTro2 /cvmfs/data.galaxyproject.org/byhand/xenTro2/seq/xenTro2.fa xenTro3 xenTro3 Frog (Xenopus tropicalis): xenTro3 /cvmfs/data.galaxyproject.org/byhand/xenTro3/seq/xenTro3.fa droAna1 droAna1 Fruit Fly (Drosophila ananassae): droAna1 /cvmfs/data.galaxyproject.org/byhand/droAna1/seq/droAna1.fa droAna2 droAna2 Fruit Fly (Drosophila ananassae): droAna2 /cvmfs/data.galaxyproject.org/byhand/droAna2/seq/droAna2.fa droAna3 droAna3 Fruit Fly (Drosophila ananassae): droAna3 /cvmfs/data.galaxyproject.org/byhand/droAna3/seq/droAna3.fa droEre1 droEre1 Fruit Fly (Drosophila erecta): droEre1 /cvmfs/data.galaxyproject.org/byhand/droEre1/seq/droEre1.fa droEre2 droEre2 Fruit Fly (Drosophila erecta): droEre2 /cvmfs/data.galaxyproject.org/byhand/droEre2/seq/droEre2.fa droGri1 droGri1 Fruit Fly (Drosophila grimshawi): droGri1 /cvmfs/data.galaxyproject.org/byhand/droGri1/seq/droGri1.fa droGri2 droGri2 Fruit Fly (Drosophila grimshawi): droGri2 /cvmfs/data.galaxyproject.org/byhand/droGri2/seq/droGri2.fa dm2 dm2 Fruit Fly (Drosophila melanogaster): dm2 /cvmfs/data.galaxyproject.org/byhand/dm2/seq/dm2.fa dm3 dm3 Fruit Fly (Drosophila melanogaster): dm3 /cvmfs/data.galaxyproject.org/byhand/dm3/seq/dm3.fa droMoj1 droMoj1 Fruit Fly (Drosophila mojavensis): droMoj1 /cvmfs/data.galaxyproject.org/byhand/droMoj1/seq/droMoj1.fa droMoj2 droMoj2 Fruit Fly (Drosophila mojavensis): droMoj2 /cvmfs/data.galaxyproject.org/byhand/droMoj2/seq/droMoj2.fa droMoj3 droMoj3 Fruit Fly (Drosophila mojavensis): droMoj3 /cvmfs/data.galaxyproject.org/byhand/droMoj3/seq/droMoj3.fa droPer1 droPer1 Fruit Fly (Drosophila persimilis): droPer1 /cvmfs/data.galaxyproject.org/byhand/droPer1/seq/droPer1.fa dp3 dp3 Fruit Fly (Drosophila pseudoobscura): dp3 /cvmfs/data.galaxyproject.org/byhand/dp3/seq/dp3.fa dp4 dp4 Fruit Fly (Drosophila pseudoobscura): dp4 /cvmfs/data.galaxyproject.org/byhand/dp4/seq/dp4.fa droSec1 droSec1 Fruit Fly (Drosophila sechellia): droSec1 /cvmfs/data.galaxyproject.org/byhand/droSec1/seq/droSec1.fa droSim1 droSim1 Fruit Fly (Drosophila simulans): droSim1 /cvmfs/data.galaxyproject.org/byhand/droSim1/seq/droSim1.fa droVir1 droVir1 Fruit Fly (Drosophila virilis): droVir1 /cvmfs/data.galaxyproject.org/byhand/droVir1/seq/droVir1.fa droVir2 droVir2 Fruit Fly (Drosophila virilis): droVir2 /cvmfs/data.galaxyproject.org/byhand/droVir2/seq/droVir2.fa droVir3 droVir3 Fruit Fly (Drosophila virilis): droVir3 /cvmfs/data.galaxyproject.org/byhand/droVir3/seq/droVir3.fa droWil1 droWil1 Fruit Fly (Drosophila willistoni): droWil1 /cvmfs/data.galaxyproject.org/byhand/droWil1/seq/droWil1.fa droYak1 droYak1 Fruit Fly (Drosophila yakuba): droYak1 /cvmfs/data.galaxyproject.org/byhand/droYak1/seq/droYak1.fa droYak2 droYak2 Fruit Fly (Drosophila yakuba): droYak2 /cvmfs/data.galaxyproject.org/byhand/droYak2/seq/droYak2.fa fr1 fr1 Fugu (Takifugu rubripes): fr1 /cvmfs/data.galaxyproject.org/byhand/fr1/seq/fr1.fa fr2 fr2 Fugu (Takifugu rubripes): fr2 /cvmfs/data.galaxyproject.org/byhand/fr2/seq/fr2.fa gorGor3 gorGor3 Gorilla gorilla: gorGor3 /cvmfs/data.galaxyproject.org/byhand/gorGor3/seq/gorGor3.fa cavPor3 cavPor3 Guinea Pig (Cavia porcellus): cavPor3 /cvmfs/data.galaxyproject.org/byhand/cavPor3/seq/cavPor3.fa PhumU1 PhumU1 Head Louse (Pediculus humanus): PhumU1 /cvmfs/data.galaxyproject.org/byhand/PhumU1/seq/PhumU1.fa eriEur1 eriEur1 Hedgehog (Erinaceus europaeus): eriEur1 /cvmfs/data.galaxyproject.org/byhand/eriEur1/seq/eriEur1.fa apiMel1 apiMel1 Honeybee (Apis mellifera): apiMel1 /cvmfs/data.galaxyproject.org/byhand/apiMel1/seq/apiMel1.fa apiMel2 apiMel2 Honeybee (Apis mellifera): apiMel2 /cvmfs/data.galaxyproject.org/byhand/apiMel2/seq/apiMel2.fa apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /cvmfs/data.galaxyproject.org/byhand/apiMel3/seq/apiMel3.fa equCab1 equCab1 Horse (Equus caballus): equCab1 /cvmfs/data.galaxyproject.org/byhand/equCab1/seq/equCab1.fa equCab2chrM equCab2 Horse (Equus caballus): equCab2 chrM /cvmfs/data.galaxyproject.org/byhand/equCab2/seq/equCab2chrM.fa equCab2 equCab2 Horse (Equus caballus): equCab2 /cvmfs/data.galaxyproject.org/byhand/equCab2/seq/equCab2.fa venter1 venter1 Human (Homo sapiens) (J. Craig Venter): venter1 /cvmfs/data.galaxyproject.org/byhand/venter1/seq/venter1.fa Homo_sapiens_AK1 Homo_sapiens_AK1 Human (Homo sapiens) (Korean Man AK1): Homo_sapiens_AK1 /cvmfs/data.galaxyproject.org/byhand/Homo_sapiens_AK1/seq/Homo_sapiens_AK1.fa hg17canon hg17 Human (Homo sapiens) (b35): hg17 Canonical /cvmfs/data.galaxyproject.org/byhand/hg17/seq/hg17canon.fa hg17 hg17 Human (Homo sapiens) (b35): hg17 /cvmfs/data.galaxyproject.org/byhand/hg17/seq/hg17.fa hg18canon hg18 Human (Homo sapiens) (b36): hg18 Canonical /cvmfs/data.galaxyproject.org/byhand/hg18/seq/hg18canon.fa hg18chr21 hg18 Human (Homo sapiens) (b36): hg18 chr21 /cvmfs/data.galaxyproject.org/byhand/hg18/seq/hg18chr21.fa hg18 hg18 Human (Homo sapiens) (b36): hg18 /cvmfs/data.galaxyproject.org/byhand/hg18/seq/hg18.fa hg18nohaps hg18 Human (Homo sapiens) (b36): hg18 No Haps /cvmfs/data.galaxyproject.org/byhand/hg18/seq/hg18nohaps.fa hg19female hg19 Human (Homo sapiens) (b37): hg19 Canonical Female /cvmfs/data.galaxyproject.org/byhand/hg19/seq/hg19female.fa hg19canon hg19 Human (Homo sapiens) (b37): hg19 Canonical /cvmfs/data.galaxyproject.org/byhand/hg19/seq/hg19canon.fa hg19chrM hg19 Human (Homo sapiens) (b37): hg19 chrM /cvmfs/data.galaxyproject.org/byhand/hg19/seq/hg19chrM.fa hg19chrX hg19 Human (Homo sapiens) (b37): hg19 chrX /cvmfs/data.galaxyproject.org/byhand/hg19/seq/hg19chrX.fa Homo_sapiens_nuHg19_mtrCRS Homo_sapiens_nuHg19_mtrCRS Human (Homo sapiens) (b37) (hg19 with mtDNA replaced with rCRS): Homo_sapiens_nuHg19_mtrCRS /cvmfs/data.galaxyproject.org/byhand/Homo_sapiens_nuHg19_mtrCRS/seq/Homo_sapiens_nuHg19_mtrCRS.fa hg19 hg19 Human (Homo sapiens) (b37): hg19 /cvmfs/data.galaxyproject.org/byhand/hg19/seq/hg19.fa hg_g1k_v37 hg_g1k_v37 Human (Homo sapiens) (b37): hg_g1k_v37 /cvmfs/data.galaxyproject.org/byhand/hg_g1k_v37/seq/hg_g1k_v37.fa hg38female hg38 Human (Homo sapiens) (b38): hg38 Canonical Female /cvmfs/data.galaxyproject.org/byhand/hg38/seq/hg38female.fa hg38canon hg38 Human (Homo sapiens) (b38): hg38 Canonical /cvmfs/data.galaxyproject.org/byhand/hg38/seq/hg38canon.fa hg38 hg38 Human (Homo sapiens) (b38): hg38 /cvmfs/data.galaxyproject.org/byhand/hg38/seq/hg38.fa Hydra_JCVI Hydra_JCVI Hydra magnipapillata: Hydra_JCVI /cvmfs/data.galaxyproject.org/byhand/Hydra_JCVI/seq/Hydra_JCVI.fa dipOrd1 dipOrd1 Kangaroo rat (Dipodomys ordii): dipOrd1 /cvmfs/data.galaxyproject.org/byhand/dipOrd1/seq/dipOrd1.fa petMar1 petMar1 Lamprey (Petromyzon marinus): petMar1 /cvmfs/data.galaxyproject.org/byhand/petMar1/seq/petMar1.fa braFlo1 braFlo1 Lancelet (Branchiostoma floridae): braFlo1 /cvmfs/data.galaxyproject.org/byhand/braFlo1/seq/braFlo1.fa lMaj5 lMaj5 Leishmania major: lMaj5 /cvmfs/data.galaxyproject.org/byhand/lMaj5/seq/lMaj5.fa myoLuc2 myoLuc2 Little Brown Bat (Myotis lucifugus): myoLuc2 /cvmfs/data.galaxyproject.org/byhand/myoLuc2/seq/myoLuc2.fa anoCar1 anoCar1 Lizard (Anolis carolinensis): anoCar1 /cvmfs/data.galaxyproject.org/byhand/anoCar1/seq/anoCar1.fa anoCar2 anoCar2 Lizard (Anolis carolinensis): anoCar2 /cvmfs/data.galaxyproject.org/byhand/anoCar2/seq/anoCar2.fa Zea_mays_B73_RefGen_v2 Zea_mays_B73_RefGen_v2 Maize (Zea mays): Zea_mays_B73_RefGen_v2 /cvmfs/data.galaxyproject.org/byhand/Zea_mays_B73_RefGen_v2/seq/Zea_mays_B73_RefGen_v2.fa calJac1 calJac1 Marmoset (Callithrix jacchus): calJac1 /cvmfs/data.galaxyproject.org/byhand/calJac1/seq/calJac1.fa calJac3canon calJac3 Marmoset (Callithrix jacchus): calJac3 Canonical /cvmfs/data.galaxyproject.org/byhand/calJac3/seq/calJac3canon.fa calJac3 calJac3 Marmoset (Callithrix jacchus): calJac3 Full /cvmfs/data.galaxyproject.org/byhand/calJac3/seq/calJac3.fa oryLat1 oryLat1 Medaka (Oryzias latipes): oryLat1 /cvmfs/data.galaxyproject.org/byhand/oryLat1/seq/oryLat1.fa oryLat2canon oryLat2 Medaka (Oryzias latipes): oryLat2 Canonical /cvmfs/data.galaxyproject.org/byhand/oryLat2/seq/oryLat2canon.fa oryLat2 oryLat2 Medaka (Oryzias latipes): oryLat2 /cvmfs/data.galaxyproject.org/byhand/oryLat2/seq/oryLat2.fa geoFor1 geoFor1 Medium ground finch (Geospiza fortis): geoFor1 /cvmfs/data.galaxyproject.org/byhand/geoFor1/seq/geoFor1.fa 27835 27835 Microcystis aeruginosa NIES-843: 27835 /cvmfs/data.galaxyproject.org/byhand/microbes/27835/seq/27835.fa AaegL1 AaegL1 Mosquito (Aedes aegypti): AaegL1 /cvmfs/data.galaxyproject.org/byhand/AaegL1/seq/AaegL1.fa AgamP3 AgamP3 Mosquito (Anopheles gambiae): AgamP3 /cvmfs/data.galaxyproject.org/byhand/AgamP3/seq/AgamP3.fa anoGam1 anoGam1 Mosquito (Anopheles gambiae): anoGam1 /cvmfs/data.galaxyproject.org/byhand/anoGam1/seq/anoGam1.fa CpipJ1 CpipJ1 Mosquito (Culex quinquefasciatus): CpipJ1 /cvmfs/data.galaxyproject.org/byhand/CpipJ1/seq/CpipJ1.fa micMur1 micMur1 Mouse lemur (Microcebus murinus): micMur1 /cvmfs/data.galaxyproject.org/byhand/micMur1/seq/micMur1.fa mm10 mm10 Mouse (Mus Musculus): mm10 /cvmfs/data.galaxyproject.org/byhand/mm10/seq/mm10.fa mm7canon mm7 Mouse (Mus musculus): mm7 Canonical /cvmfs/data.galaxyproject.org/byhand/mm7/seq/mm7canon.fa mm7 mm7 Mouse (Mus musculus): mm7 /cvmfs/data.galaxyproject.org/byhand/mm7/seq/mm7.fa mm8canon mm8 Mouse (Mus musculus): mm8 Canonical /cvmfs/data.galaxyproject.org/byhand/mm8/seq/mm8canon.fa mm8 mm8 Mouse (Mus musculus): mm8 /cvmfs/data.galaxyproject.org/byhand/mm8/seq/mm8.fa mm9canon mm9 Mouse (Mus musculus): mm9 Canonical /cvmfs/data.galaxyproject.org/byhand/mm9/seq/mm9canon.fa mm9female mm9 Mouse (Mus musculus): mm9 Female /cvmfs/data.galaxyproject.org/byhand/mm9/seq/mm9female.fa mm9 mm9 Mouse (Mus musculus): mm9 /cvmfs/data.galaxyproject.org/byhand/mm9/seq/mm9.fa hetGla1 hetGla1 Naked mole-rat (Heterocephalus glaber): hetGla1 /cvmfs/data.galaxyproject.org/byhand/hetGla1/seq/hetGla1.fa nomLeu1 nomLeu1 Northern White-cheeked Gibbon (Nomascus leucogenys): nomLeu1 /cvmfs/data.galaxyproject.org/byhand/nomLeu1/seq/nomLeu1.fa nomLeu2 nomLeu2 Northern White-cheeked Gibbon (Nomascus leucogenys): nomLeu2 /cvmfs/data.galaxyproject.org/byhand/nomLeu2/seq/nomLeu2.fa monDom1 monDom1 Opossum (Monodelphis domestica): monDom1 /cvmfs/data.galaxyproject.org/byhand/monDom1/seq/monDom1.fa monDom4 monDom4 Opossum (Monodelphis domestica): monDom4 /cvmfs/data.galaxyproject.org/byhand/monDom4/seq/monDom4.fa monDom5 monDom5 Opossum (Monodelphis domestica): monDom5 /cvmfs/data.galaxyproject.org/byhand/monDom5/seq/monDom5.fa ponAbe2 ponAbe2 Orangutan (Pongo pygmaeus abelii): ponAbe2 /cvmfs/data.galaxyproject.org/byhand/ponAbe2/seq/ponAbe2.fa chrPic1 chrPic1 Painted turtle (Chrysemys picta bellii): chrPic1 /cvmfs/data.galaxyproject.org/byhand/chrPic1/seq/chrPic1.fa ailMel1 ailMel1 Panda (Ailuropoda melanoleuca): ailMel1 /cvmfs/data.galaxyproject.org/byhand/ailMel1/seq/ailMel1.fa phiX phiX phiX174 (AF176034) /cvmfs/data.galaxyproject.org/byhand/phiX/seq/phiX.fa Sscrofa9.58 Sscrofa9.58 Pig (Sus scrofa): Sscrofa9.58 /cvmfs/data.galaxyproject.org/byhand/Sscrofa9.58/seq/Sscrofa9.58.fa susScr1 susScr1 Pig (Sus scrofa): susScr1 /cvmfs/data.galaxyproject.org/byhand/susScr1/seq/susScr1.fa susScr2 susScr2 Pig (Sus scrofa): susScr2 /cvmfs/data.galaxyproject.org/byhand/susScr2/seq/susScr2.fa susScr3 susScr3 Pig (Sus scrofa): susScr3 /cvmfs/data.galaxyproject.org/byhand/susScr3/seq/susScr3.fa ornAna1 ornAna1 Platypus (Ornithorhynchus anatinus): ornAna1 /cvmfs/data.galaxyproject.org/byhand/ornAna1/seq/ornAna1.fa ornAna1 ornAna1 Platypus (Ornithorhynchus anatinus): ornAna1 /cvmfs/data.galaxyproject.org/byhand/ornAna1/seq/ornAna1.fa Ptrichocarpa_156 Ptrichocarpa_156 Poplar (Populus trichocarpa): Ptrichocarpa_156 /cvmfs/data.galaxyproject.org/byhand/Ptrichocarpa_156/seq/Ptrichocarpa_156.fa priPac1 priPac1 Pristionchus pacificus: priPac1 /cvmfs/data.galaxyproject.org/byhand/priPac1/seq/priPac1.fa pseuAeru_PA7 16720 Pseudomonas aeruginos (str. PA7): 16720 /cvmfs/data.galaxyproject.org/byhand/microbes/16720/seq/pseuAeru_PA7.fa pseuAeru_PAO1 pseuAeru Pseudomonas aeruginos (str. PAO1): pseuAeru /cvmfs/data.galaxyproject.org/byhand/microbes/pseuAeru/seq/pseuAeru_PAO1.fa pseuAeru_UCBPP_PA14 386 Pseudomonas aeruginos (str. UCBPP-PA14): 386 /cvmfs/data.galaxyproject.org/byhand/microbes/386/seq/pseuAeru_UCBPP_PA14.fa pUC18 pUC18 pUC18 (L09136) /cvmfs/data.galaxyproject.org/byhand/pUC18/seq/pUC18.fa Spur_v2.6 Spur_v2.6 Purple Sea Urchin (Strongylocentrotus purpuratus): Spur_v2.6 /cvmfs/data.galaxyproject.org/byhand/Spur_v2.6/seq/Spur_v2.6.fa strPur2 strPur2 Purple Sea Urchin (Strongylocentrotus purpuratus): strPur2 /cvmfs/data.galaxyproject.org/byhand/strPur2/seq/strPur2.fa strPur3 strPur3 Purple Sea Urchin (Strongylocentrotus purpuratus): strPur3 /cvmfs/data.galaxyproject.org/byhand/strPur3/seq/strPur3.fa oryCun1 oryCun1 Rabbit (Oryctolagus cuniculus): oryCun1 /cvmfs/data.galaxyproject.org/byhand/oryCun1/seq/oryCun1.fa oryCun2 oryCun2 Rabbit (Oryctolagus cuniculus): oryCun2 /cvmfs/data.galaxyproject.org/byhand/oryCun2/seq/oryCun2.fa rn3canon rn3 Rat (Rattus norvegicus): rn3 Canonical /cvmfs/data.galaxyproject.org/byhand/rn3/seq/rn3canon.fa rn3 rn3 Rat (Rattus norvegicus): rn3 /cvmfs/data.galaxyproject.org/byhand/rn3/seq/rn3.fa rn4canon rn4 Rat (Rattus norvegicus): rn4 Canonical /cvmfs/data.galaxyproject.org/byhand/rn4/seq/rn4canon.fa rn4 rn4 Rat (Rattus norvegicus): rn4 /cvmfs/data.galaxyproject.org/byhand/rn4/seq/rn4.fa rn5 rn5 Rat (Rattus norvegicus): rn5 /cvmfs/data.galaxyproject.org/byhand/rn5/seq/rn5.fa rheMac2 rheMac2 Rhesus Macaque (Macaca mulatta): rheMac2 /cvmfs/data.galaxyproject.org/byhand/rheMac2/seq/rheMac2.fa rheMac3 rheMac3 Rhesus Macaque (Macaca mulatta): rheMac3 /cvmfs/data.galaxyproject.org/byhand/rheMac3/seq/rheMac3.fa oryza_sativa_japonica_nipponbare_IRGSP4.0 oryza_sativa_japonica_nipponbare_IRGSP4.0 Rice (Oryza sativa L. ssp. japonica var. Nipponbare): IRGSP4.0 /cvmfs/data.galaxyproject.org/byhand/oryza_sativa_japonica_nipponbare_IRGSP4.0/seq/oryza_sativa_japonica_nipponbare_IRGSP4.0.fa aplCal1 aplCal1 Sea Hare (Aplysia californica): aplCal1 /cvmfs/data.galaxyproject.org/byhand/aplCal1/seq/aplCal1.fa oviAri1 oviAri1 Sheep (Ovis aries): oviAri1 /cvmfs/data.galaxyproject.org/byhand/oviAri1/seq/oviAri1.fa Bombyx_mori_p50T_2.0 Bombyx_mori_p50T_2.0 Silkworm (Bombyx mori str. p50T): Bombyx_mori_p50T_2.0 /cvmfs/data.galaxyproject.org/byhand/Bombyx_mori_p50T_2.0/seq/Bombyx_mori_p50T_2.0.fa choHof1 choHof1 Sloth (Choloepus hoffmanni): choHof1 /cvmfs/data.galaxyproject.org/byhand/choHof1/seq/choHof1.fa saiBol1 saiBol1 Squirrel monkey (Saimiri boliviensis): saiBol1 /cvmfs/data.galaxyproject.org/byhand/saiBol1/seq/saiBol1.fa speTri2 speTri2 Squirrel (Spermophilus tridecemlineatus): speTri2 /cvmfs/data.galaxyproject.org/byhand/speTri2/seq/speTri2.fa gasAcu1 gasAcu1 Stickleback (Gasterosteus aculeatus): gasAcu1 /cvmfs/data.galaxyproject.org/byhand/gasAcu1/seq/gasAcu1.fa strePneu_R6 278 Streptococcus pneumoniae (str. R6): 278 /cvmfs/data.galaxyproject.org/byhand/microbes/278/seq/278.fa tarSyr1 tarSyr1 Tarsier (Tarsius syrichta): tarSyr1 /cvmfs/data.galaxyproject.org/byhand/tarSyr1/seq/tarSyr1.fa sarHar1 sarHar1 Tasmanian devil (Sarcophilus harrisii): sarHar1 /cvmfs/data.galaxyproject.org/byhand/sarHar1/seq/sarHar1.fa echTel1 echTel1 Tenrec (Echinops telfairi): echTel1 /cvmfs/data.galaxyproject.org/byhand/echTel1/seq/echTel1.fa tetNig1canon tetNig1 Tetraodon (Tetraodon nigroviridis): tetNig1 Canonical /cvmfs/data.galaxyproject.org/byhand/tetNig1/seq/tetNig1canon.fa tetNig1 tetNig1 Tetraodon (Tetraodon nigroviridis): tetNig1 /cvmfs/data.galaxyproject.org/byhand/tetNig1/seq/tetNig1.fa tetNig2canon tetNig2 Tetraodon (Tetraodon nigroviridis): tetNig2 Canonical /cvmfs/data.galaxyproject.org/byhand/tetNig2/seq/tetNig2canon.fa tetNig2 tetNig2 Tetraodon (Tetraodon nigroviridis): tetNig2 /cvmfs/data.galaxyproject.org/byhand/tetNig2/seq/tetNig2.fa Tcacao_1.0 Tcacao_1.0 Theobroma cacao Dec 2010 (CIRAD/Theobroma cacao Belizian Criollo) /cvmfs/data.galaxyproject.org/byhand/Tcacao_1.0/seq/Tcacao_1.fa tupBel1 tupBel1 Tree Shrew (Tupaia belangeri): tupBel1 /cvmfs/data.galaxyproject.org/byhand/tupBel1/seq/tupBel1.fa Tcas_3.0 Tcas_3.0 Tribolium castaneum: Tcas_3.0 /cvmfs/data.galaxyproject.org/byhand/Tcas_3.0/seq/Tcas_3.0.fa triCas2 triCas2 Tribolium castaneum: triCas2 /cvmfs/data.galaxyproject.org/byhand/triCas2/seq/triCas2.fa melGal1 melGal1 Turkey (Meleagris gallopavo): melGal1 /cvmfs/data.galaxyproject.org/byhand/melGal1/seq/melGal1.fa Xanthomonas_oryzae_KACC10331 12931 Xanthomonas oryzae (str. KACC10331): 12931 /cvmfs/data.galaxyproject.org/byhand/microbes/12931/seq/Xanthomonas_oryzae_KACC10331.fa Xanthomonas_oryzae_MAFF_311018 16297 Xanthomonas oryzae (str. MAFF_311018): 16297 /cvmfs/data.galaxyproject.org/byhand/microbes/16297/seq/Xanthomonas_oryzae_MAFF_311018.fa Xanthomonas_oryzae_PXO99A Xanthomonas_oryzae_PXO99A Xanthomonas oryzae (str. PXO99A): Xanthomonas_oryzae_PXO99A /cvmfs/data.galaxyproject.org/byhand/microbes/Xanthomonas_oryzae_PXO99A/seq/Xanthomonas_oryzae_PXO99A.fa sacCer1 sacCer1 Yeast (Saccharomyces cerevisiae): sacCer1 /cvmfs/data.galaxyproject.org/byhand/sacCer1/seq/sacCer1.fa sacCer2 sacCer2 Yeast (Saccharomyces cerevisiae): sacCer2 /cvmfs/data.galaxyproject.org/byhand/sacCer2/seq/sacCer2.fa sacCer3 sacCer3 Yeast (Saccharomyces cerevisiae): sacCer3 /cvmfs/data.galaxyproject.org/byhand/sacCer3/seq/sacCer3.fa taeGut1canon taeGut1 Zebra Finch (Taeniopygia guttata): taeGut1 Canonical /cvmfs/data.galaxyproject.org/byhand/taeGut1/seq/taeGut1canon.fa taeGut1 taeGut1 Zebra Finch (Taeniopygia guttata): taeGut1 /cvmfs/data.galaxyproject.org/byhand/taeGut1/seq/taeGut1.fa danRer2 danRer2 Zebrafish (Danio rerio): danRer2 /cvmfs/data.galaxyproject.org/byhand/danRer2/seq/danRer2.fa danRer3 danRer3 Zebrafish (Danio rerio): danRer3 /cvmfs/data.galaxyproject.org/byhand/danRer3/seq/danRer3.fa danRer4 danRer4 Zebrafish (Danio rerio): danRer4 /cvmfs/data.galaxyproject.org/byhand/danRer4/seq/danRer4.fa danRer5 danRer5 Zebrafish (Danio rerio): danRer5 /cvmfs/data.galaxyproject.org/byhand/danRer5/seq/danRer5.fa danRer6 danRer6 Zebrafish (Danio rerio): danRer6 /cvmfs/data.galaxyproject.org/byhand/danRer6/seq/danRer6.fa danRer7 danRer7 Zebrafish (Danio rerio): danRer7 /cvmfs/data.galaxyproject.org/byhand/danRer7/seq/danRer7.fa CHM13_T2T_v2.0 CHM13_T2T_v2.0 Human CHM13 2.0 (T2T Consortium) Jan. 2022 /cvmfs/data.galaxyproject.org/byhand/CHM13_T2T_v2.0/seq/CHM13_T2T_v2.0.fa