##maf version=1 a score=13239 s hg19.chrUn_gl000248 2045 342 + 39786 CTATTCAGGCTGAGCAAGAG-GCTGAATGCCCGTAGGAGGAAGACGGGATGTAGGGACGTCCATACCAGAGACAACAAAGAAGAAAGCT------TTTCACTGCAGGGCATTGTGGGAGGGAGACAGGGAGAGAGGGGAAGAGAAGT-----GAGAAGCCCCTGTGTCCATGAG----GTCTCTGAGCTGAAGCATTAGCTAAGGGCACCTTGTTGGGTGGAGAAGAAAGCTGGCAAGGTGGGTGGGGAGCTTCTGCCCCATTCTGGCTTGGAATTCTGGGAAGAGATCCCCTCCCAGGCATCCCCCTCCCTACCTA-----CTCAGC--ATCAGTCTCAGCCTGAGAGACTCTGCATTTGCCCT s canFam2.chr10 38556371 360 - 72488556 CTTTTTAGGCTGAACCATAATGGCAAATGCCCATCGGAGAAAGACATGGTGTAGGGAAGTCCA-----GAGAAGAGGAAGAATAAAGTTGGCCTTCTCCACTTCAAGGGATTGTgggaggaggacagagagagagagagagaaaagcagagggaggggCTGGTGAGCAGCTGGGCATCACCTTTGAATTGAAGTACCATCTCTGAGGACCTTTTTGGGTTGAGGAGAGAGCTGATGAGGAAGGTGGGAGGCTTCTGCCCAATTCTCATTTGGACTTCTGGGAAGAGACCACCTCACAGACATCCTCTCCACCTCCAATATCTCCCACCCTGTCAGCCTGAGCCTGAGAGAGCCTGAGTCTGCCCT a score=7240 s hg19.chrUn_gl000248 2708 178 + 39786 CGAGCCACCCTCACTTCTTGTCTGACATGGAAGGGAACCAGAGGCTCCCATAAGCCACTGA---GAGAGACACAGAAGTTAGCTGAGACTCAGACAG--GGGTGCTGGCCAAGGAAGGTTGTTGCC-CCAGGGCCAAATGG-CCTTCAACCAGGGGCTACTCGCATTCAGGCTGCCCGGGCAGAG s canFam2.chr10 38556733 183 - 72488556 GGAGACACCTTTAATTCTCCTGCGACATAGAAAGGAATCAGAGGCT-CCATAAGTACCTGAGGGGGGAGGGGTAGAAGCTAGTT-AGAAGTAGAGAGCTGGCTGGAGCTCAAGGAAGGTTGCTGCCACCAGGGCCAAGTGACCCTTCAGTCAGGGGCCACTCACATTCAGTCTGCCTAGTTAGAG a score=218904 s hg19.chrUn_gl000248 3160 4911 + 39786 CCTAAGTCTCTGGCATTGTGCTGGCA----------CCTTCAACAAACacttctctttcccctcctgtcttcctaggacagtgtttgcatcttactcat--cctgaatctccctcagtgccctgcagagagtaagtgcctcacacagtgcttgatgagtggatgaaGGTAGCCTTGTTAAAGCCTCTGGGATGGATTTGAGGACGTTAAAGCATGCTGAGGGGGAGGAGAGAGAAA-AAAGGAGGGTGGGCCGGGAGTCGGGAGGAGACCTCTCCATTCTTACGGTGAACAGGCCAAGTGAGGCAGAAGGAGAA-------------TAAAGGCAGAGC---------CTAGGG---TGAGGGCAG----GGGGGCTGCAGACACCCCTAGAGCCCAGGAGAAACCAAAGGAAGGTGGTCGGTGACGAGCAGGTGGGAGATCCCTGGGTAGGCTGTGCTGGCAGCACCCTGTGCTCATAGCTGGTGTTTGACTTCCCCCAACCCCGCTTTCGGGTGGATGGGTGAGA----------------GAAGCAAGTGTGGCCCAGCAGG-CTGCAGAGTGAGCTGGTGTCTGTGAGAGGCAGGGGTCCTCC---TGGAGACTGGGCCTTGGGTCA-----GCGAGGGACATGCTGACCCTGCCTTGGCAGGTTAGAAGCTGGACAGCCAACAGCCCTTCCATGATGGCAAAAATACACATCTCTCACGCTCATTGAAGGCTTTGCAATTTACACAGGCTACAGGATGACTGTGGAGTCGCCCATCCCATCCATAAGGCATTTCAGGCAGGTACCATGATCAACAGATGCTATTACACCCCCATTTGATGAGTAAGGATGTTCGTGGTGACAATGGGATTTAGGGTGAACATGGGGTCGGGATGTGTACAAAGATGAGGGTGCACTTAACTTCCCCTACTGctaaaaaagggacgttgagctggagcttgaagaatgagctgttgtccatctgagggagaaggcagagaaaggacatttcaggcacagtgaacatgtgtgaaaggatgggggcgtgaggaaGCATGTTATATGTAGCGATAATAACAGGaatgattgctaacatacattgcgagcataccacatgacaggcgctattc---ggacttcacatactgaactcaaatccattctcacgacagcccagtctggtagatgctagcatgaactccattttatagatgaggaaatgaaggcacagggaattaagtgatttccgtaaggtcacaatgagagcaagtggtgaag---ccaggactggaacctaCTTGAGGGACAGGCGTCCTAACAGTGTAACCAAGGTGAGTAAGGGCTAAGCAGGAAGGGATGAAGTATGTAGCTAAAGAGTTGGAGTGGGGT-GATGATAAGGGAAGA-----TATTTAGATTTTATCTAAGAGGCAATAGGGAGCCATTGATGGTCTAAGCAGAAGAGTGTTAGAAAGGTCCATGTGGCACAGGAAAGAGGGAAAATTGAGAGAGAGAATGAAGCCACGAAGAGTGTGCTGGGG-AGACAGCCAGATCCTTTATTGTTACATGTAAGCCAGATTGCTTCTTCCATCTGGGTAACCATCACCCACTCTGGAGCTCAA----------CTTCAGAACATGGGTTATACTATTTCACAAACTCTTCCTGGGAGACAAGAGCTCCACCTGGACC-TGTGACATGACTG--GTACCTCCCACATCACATTCTGTGCACCCAGTAACTGCATTT-----GGCTCTGTTTTCCTTGGATTGCTAGACATTCTTTACCTCTTTATTTAATGCACTAGGTGGTGTTCCTTTTCACCCTAGGAGCACAGGATAGTATTAGAGTCCTTGAAAAGGTGTTTCAGATATTCTTAGTGGGAAGCTCTTCCACTGGGTGTGACCCTGGACAAATGCCTCCTCCATAC-------TTTTTTTGCTGCCTGTCTTGTTTCTCATATATACATGGGCAGGCAACCTGGATTCTGCCAGGCAACCA-GGTGGCAAGT----TGGCCCGCCCAccagtcccagttctaaagagtggctgtatgactttggtgaagtcactgtgtctccctgggatgcatctgagaggaaggaggctgtactagacaatACAGGCAATACCTAAACTGTCCTCCAGCAAATCATGTTTGCTGTTTCCAGAATCTTTACTTCCGAGAGTCTAATTTTATTCAATGGTTCAATGTATATTTGTAGAGTTAGGCAT-------GGTGCTAGGGATATGGTGGTGCAAGATAGAAAGAACCCTTGCTATCATTCTCACTGATCATATTCAGTAACTGATCCcattgaacatccatgcattgagcacccattacctcctggatctgctgctagaggctatgagaggcatagagaagatgaagatatggtgcctgctctaaactagctTTTCCTCCAAGTTCACCTCCTTAAAGGGAGAC-AGCCAGCTGAATGTGGTCAGGAGGACTCCTTAAAAGGCGCTCCTTTTGCTCATCACCTGTAACTTCAGTCAAATAAGTAGCCGTGCCAAACCTGGTTTCTTTGGGGCATGGCTTCCAGGTCAGTGCGTCTCTGACACTTGCCCCAGGTGCAGCAAAGTTGCGAAATGGACACGGCTCCGTGTGCCCACCAGATGGCGGCATTCTAGCATATTCCCTAACAGCTGGGGTCATTGAGAAACAGCACCCTGTGTTGGTGGAGGGAAGAGACCACTTCCTCTC-TAA---------------------TCCAGGGCCCATTCA---TACTGATCTTCTGGAAAGTTCTGGGGTTAAGGGGCTGGCGGGGAAGGAATGGTGGTCGGGCAAAGGAAAATGGCGCTAAA---------TGCTCCATCCAACAAACATTTCTGGCTGCCTTCT-GGAGCTCCCCTTGTCCCCAAGTCTGCATTTGGTGAT-------------------------------------AAATTTGCATCATTACTTATTTACCTGTCATTCTCTTTTGTCCAGTTGGCGCCATGTCTATTTCCTCTTGGGATCCATGGTGCCTACGCAGAGTCTGGCCCAGAGCAAGGATTAAGGGTCTTGGCCGAAAAAAAGTGAAGCTTATTTTAAGCAAGAACTTAAAACAGACTCTCACCTAAGGACCACCACCCAGGCGAGGGCTTCTTGGGCCATTAACATCCTTGACCTCAAAGATGGAAATTGCAA-GATGGGAGACTGAGAG-TGCCGTTCAAGGTTCCCTAATGTGAGCCATTGGAGACATGGCTGGGATCAACTTTA-ACCTATCTCTGCTCAAAAGGTGTCAACCTTGTCCACATCAGCCAGGATGTCAAGGTGGAGAGGATAGAAATTCCGGATCTGGCTGAGTCTAGTGCCCACCAGAGAAAACTTTGGCCTTTAATCTGGGATTTTTACATCATTTTCTTCTCTAACAGAGGGAGAGAGAGGGGCATGAGTT--------------GGGTCCACCAATTGGGACAAGCAGGTCCAACCTGCTTCTCTGCTGTCTTCAATTCCATTCAGACCCCTACGCCCTGCTGCCTAGCACCTCCACCTTCCCCTCTGGGGCTCCAGCAAAGAGGAAGGCAGTCAGAACCACTCCAAAGGGTCCAATCTCCTTGCATTCCAGCCCTGGCCAAAGTCAGCCCGGGAACAAGTGGAGAGCCCCTCTTGAAGGAAGTGATTCAGAAACCATGATGGCCTGGCGGCCCGCCGTGACTCACAGCACATCAATGGGGGAATTGTCTGTAGAAGCCGAGAATTCCAAAGCTCTtttctttcctttcttacttactttcttttttttctttctttctttcttttttGCCCTCCCCTTGGCGGCATTGTGCAACAGCAGGGCTGCCCAGAAACATGTGGTTTTCATCATTGGCTCC-ACAGCTGCCCTAGAGCACTGTGGAGAAAATAAGATGGAGAGGGAACAGGATACAAGGGG-ACCTGTCGCGGTCAAGCAGGGTCCTTCTCTTTCCC----------------CCCACCTTTCTTGTCAACACCAACATCCTCAAAGAGCATCTGGAACGGAAGGGAatagaattttggatctgggagaaaactta-gagtatgtctcatccaataactctatgtacagatgaggaaactgaggcctcaagaggggacgtaagtggcttggcaaatg-tccacagccaagttgcaTCTTGCATCTTGCTGCAGTGACTGACTTTTCTTAGCCTCCAAGTCAGGAAATGTAGTTTGACAAAGGATAA--TTTTTTTCCATGGAATGTGACAGATGAAAAGTCATACCAAGTTTAGTTATAAATCTCTCCATTGTCCCTTTCCCCTTATctaccagtctagggagtctgttttacccagagtcatctgtggggacacgtgcaaaatctaaaggtctttttgcagttgt-ca--tctgattggtcatctctgtagcatgt---gaattaatgtccacaggtttccaggtattccccctatgcatccact-cctacctctgcaacgtctccttttcggcattcttttctcctcccttggctctcagatgccttagttctataggg--ctgtcttatcttaactcatatccatgttcacg----gtttcagtggctatcattcagctgaggactcccaaatcttatctatagtctgttcatcattcctgagctacagacgtgtacatacagctgccttctcagtgcctttcttggatTCCCCAGATGGAACTCATCATTTCCCTCCATAGCTCTTTGACTACTTTGATTTTATTACCAAGTAACTATGGGACcaatatagtcagtgttccaaagcacatgctttggcatcttattgacctgggcctgactcccagatatgccacttaactggctacgggtctttggccaagttactgacctttccaagttcctcatctgtaaaatgggggtaataaaaatacctacttcataaggctgtcattaagaggaaatgagttaatacaatagcattaacacaatgcctggcacataataaatactcaattactgctgagctgttattTTTATTATGTACCTCAGCATCCTCCCAACTTGAGCCACACTGAATTCTTAGCACTT s canFam2.chr10 38559278 4890 - 72488556 cctaagtatctgacatggtgctggcattgagcagaaccctcaacaaatgttTGC--TGCCCCTCCACTCCACCTagcgcagggtttgcatcttcttcattgctgaaatctcccacaatgccttgcagagaggacgtgcttcacataatgcttaatgagtacatggaGGAAGGCTTATTAAAG-------------------GACATTAAAACAAGCTGTGGGAGAGGAGGGAGGAGCAAGGGAGAATGAGTGGAGATCCAGGAGGGGATCTTTCCATT-TTATGGCAAATACAGTAAAaaaaacaaaaacaaaaacaaaGTGCTTTTTAAAGGTAAGGCAGAAACTTACTGGGGAGATGAGGGCAGCCAGGGTGGCTG-------------AATTTGGGGGAAACAGGAAGAAGGGGG-CAGTGAAGAGGTGGTTGGGGCTCCCCAGGCTCTTTGTGCTAACAACA-------------ATTAGTGCCTGCCTTTCCCG------------GAATGGGAGGGCCAGGAGCTGCCAGTACCCAGGAAGCAAGCATGGGTGAGCAGGGCTGCAGAGGGACCTAGTGTGTATGAGAGGGAGGGGCACTGCCGCTGGAGGCTGGGTCTTGGGTCACCACAGCGAGGGACAGGCTGGCCCTGCTCTGTCAGGTCAGATGCAGGGCAGCTGACATTCCTTCTCAAATTACAAAAATACACATCTCTCATGTTT-TCAAGGGCTTTGTGATTTGTACAGCCTGTGGGACGACTATGGAGTTACCCATCTGATCCATGAGGCAT-------------CATGATCCATAGATGCCATTAC--CCCTGTGTGACTGATGGGGAGTTTCAGGGTGTCAATGACTTTTCTA-TGAACCTGCAGT-AGGCTGTATACAAAGATGAGGGTGCAATTAATTTCATCTGTGGCTgaaaaggggacactgagctggttcttgaagggtgagctgttgtccatctcatggagaaggtagggaaag-acttttcaagcataggga--------------------------ggaagcatgGTGGATTTAGTGATAGTAATAGTAACTATCCctaacatatactgacaatgtac-atgtgctaggaactattttggaggcttcatacacagaactcaa-tcaattctca-aatggtccagtctggtagatgttactgagagctccattttacagatgaggaaatggaggtgcagagagttaagtgatttccttaaggtcacagtggtaatgagtggtggtgagtctaggactggaa---------------ggca----aacagtgtgATCAAGGTG-TTAAGGGCTAGGCGGTAAGGGATGAAACATATGGCTAGAGAGGTGGAGTGGGCCAGATGAAAAAGGAAGGCAAAGTATTTGGAGTGTGTCCTGTTGGCAATGGGGGGCCACTGATGGTCTAAGCAGGGGATTGTTAGAAAAATCCGTGTGACACTGGGCAGAGGGTGACCTG---GAGAGAATGAGGTCATTGGGGGTGTGTTGGGGGAGATAGCCAGATCTTTTGTTCTGACATGTGGGCTAAGCTGCTCTTTCCACCTGGATAACCATTACCCACTCTGAAGCTCAAGTTCATACACCATCAGGACATGGGTTA----------CAAGCT-TTCCTGGGAGGCAAAGGCCCCACGTGGCCCCTAAAATATGGCTGTGGCACCTTCTGCATAACATTCTCTGTGTCTAGTGACTGCATTTCAGCTATTTCTATATTCCTTGGATTACCAGATATCCTTCACTTCTATATTCAGCACACTAGCTAGCTTCCTTATTTATGC-AGAAGCACAGGCCAGTATTAGAGTCCTTGTGAAGATTTTTCAGAAATTCCCACTGGAAAGCTCTTCTATCAGGTATAACTCTAGACAAGCGCCTGCTCTAGACAGATACACTGCTTTACT-------TTGTTTCTCATGTAAGTGTGGGCTGAC---------TCTGCCACGCAATCATAATGGTAagtcagctgacacgcctaccagtcccagctctaa-gactagctgtgtgaccttgggcaaatcattgtacctttctgtgctgcacccaagaaagaggaggttctagtagacaatAGAGACAAGGTCTCTATTCTCCTCCAGCAAACAATGTTTGCTGTTTCTAGAG-CTTTACTTTCAAGAGTCTGATTTCACGGatttgttcaacatatttttgtaggtccaggcactgtgctaggtgctagggacacagtggtacaaggca-------------CTATTATTCTGGCTGATTGTTTATAGTGAGTGATTCCATCTAACATCCATGCGCTGAGCACCTATTACTTTCCT-ATCTTCTGGTAGAGGCTATGAGAGGCATAGAGAAGATTAAGATATGGTGCCTGCTCTAAAGAAGCTTTTTATCTAAAACCGCCTCTTTAAGGAGAGACCAGCTAGCTAAACGTGGACAAAGGGACTTCTTAAAAGGTGTTGCTTTTACCCTTCATCTGTAACTACAATCA-------------------------------GAGGCATTGCTTTCAGGTCGACCCATCTCTGATAAGTGCCCCAGGAGCA-TAGAGTTGTAAAATGAACATGGCTCAGCCTGCCCACAAGATGGCGGCATTCTAGTATATTCCCGAACGGCTAAGGTCATTG-GAAACAGTGTCCTCTGTTGGCATGGAGGAGAGACCACTTCATCTCATAAGGGCTGAGAGTAGGTCTTATCTCCAGTGTTCAGTGAAGGTACTGACCTTCTGGAAAGTCCTGGGG----------GGATGAAAAGCACTACTGGCTAGACAAAGGGAAATGGCACAAAAATGTTGCCTTATTCAATTCAACAAATATTTCTggatgccttccctgagctccccc-atttccaagtttgtgtttgatgatctcctctgtacccttccaccagagcacctgccatattgaatttgcattgttg---attcatcagtctttctcttttatccagttaaaaccatgtcagtttcctctcagaatccctgatgcccacacagaatctggctcagagtgagcac--aatttttttgttgaatgaa--cgaTGTTTATCCTAAGCAAGAATTTAATACAGACTCTCACTTGAATATCATTACTCAGGTGAGGCCATCTTGGACTGTTAATATCCTTGTCCTTCACAATGGAAATGAAAAAGATGGGAGATCAAGAGATGCAGTCTAAAATACCCTAAT-TGGGTTGT-GAAGGAATGGTCAAAATCAACTTTATGTCTGCCTCTACCCAAAAGAGATCAGCCTTGTTCACAT-ACCCAGAGAATCAAGGTGGAGAAGATGGAAAATCCAGATCTGGCTGAGTCTGGTGCCCACTGCAGGAAACTGTGGCCTTTAATCTGGG-TTTTTACTTCATTTCCATCTCACTC-------GAGAGGGAGGCATGAGTTTTAGTGCTGTAAGAGGGTCTATCAGTCGGAATA-GCAAGTTCAACCTGTTCCTCTGCCATCTTC-----CATTGAGGCCCCC-TGTCCTGCCACCTGGCACCTCTACCTCTGTTGCTAGAGTTATAGCAAAGAAGAAAGCAGTCAGAGGCACTCTGAAGGGCCCAACCTCCTTGCATTCCAGCCCTGGCCAAAGCCAG---GGGAACAAGTGGAGAGCCCCTCTTGGAGGAAGTGATTCAGAAACCGCGATGGCCTGGCGGCCCGCCGTGACTCACAGCACATCAATGGGGGAATTGTCTGTGGAGGCTGAGAATACCAAAGCtcttttctttccttcctttctctcttttcttttttt-----tccttttcttttTTGCCCTCCCCTTGGCGGCACTGCGCAACACCAGGGCTGCCCAGAAACATGTGTTTCTCATCATTGGCTCCAATAGCTGCCTTGGAGGACCGGGGAGCAAACAAGACCGAGAAGAAACAAGCCCCATGGGGCAGCTGCAGCAGTTAAAGGGGGCCCTTCTCTTTCCCTGCACCTGAGTCCTATTTCACCTTCCCCATCAACACTGGCATCCCCAAAGAGCATCTGGAATGGAGGAGAatagaattttggatacgggagaaaacctaggagtatgtctcttccaatacctttgtctacaggcaaggaaactgatgcctcaagaagggaagtaagtggcttgccaaatactgcacagccaaattacagCTGACGTCTTGCTGCAGTGACTGCATTTTCCTGTACCCCAAATCAGGAAATGTAG-TTGACAAAGGATGAATTTCTTTTTCAGGAATAGTGAAAAGTGTGAAGTTGTACTAAATTTCATTATAAATCTATCAATTGTCTCTTTCTCCTTATCTACCAGTCTCAGGAAACTGGTCTGCACAAGGTCATTTGTGAGGTCATTTGCAAAACCTACAGGCCGCTTTGCAGTCCTGCAGTTCTGACTGGCTGCCTCTGTAGCATGTGTGGCATTGGTGCCCACtggcttgcaggctgcacccctctgttttgcctccctacctctctagcttctccttgttggcattctttgcttccgatctggctctgaaatgtccaagcactagagggttctgtccta----ggcccatatccatattcatgctttctttcagtgcctaaaaacta-ttgatgactcccagatctttgctacag-ctgttcatctttcctgggctccaaatatatatgtacagctgccttctcagaaccttctttggatgccCCAAACTAAACTCACCATTTTCCTCCAAAGCTGACTGACTGCTTTGACTTTAGTGCCACACAACATTGGGAAGaggatagctaatatttcaaaacatgtgctttggaatctcatagacctgggctcaactctcagatatgccacttaactagc-acggggccttgaccgagttacttaac-ctccaatttccccatctgtaaaatggggataatagaaataccaccttcataagattatcattaagagggaatgagttaattcaacagcattagcacaatgcctggtacatagtaaatactcaatacatg-tgagctgttattTTTATTTTGCATCTCAGCACCCTccccacttgagccacactgaattcttaccattt a score=11472 s hg19.chrUn_gl000248 8175 262 + 39786 cacattttacagatg----aggaaGACAATCACTTTCTGAGAAAAGCAAACAACCAACCAAGAGATTCCctcatgttccttcttactagccaataatttatactgaatatgatgacacagaaaaaaagaaaaaggtagg----ccaattcatagttcacttttcttttagtccttacttactcaacagtaagcctcaagtagagggggttggaagaatgtgtgtgcatccagaagtgaaataaaaacagttgagttagttttgtgtagca s canFam2.chr10 38565512 257 - 72488556 cacttgcttcaaatgcagaaagaagacaatggggttctaagaaaaacaa--------ccaagaaattctctcatagtctttcctgctggccaacaacttctgctgaaaatgataacagagaaggaaaggaaaagataaggcaaccaaccaatagttc---tttttttcagtccttccttactcatcagtcagcc-aaagtagggaaagttggtagaatgcatgcatattgagaagtggaataaaa-caggtgagttagttttgtgccaca a score=7063 s hg19.chrUn_gl000248 8957 142 + 39786 gcatgtaggaactatgaaatatgaattgtgtaattttattgattctgcttatgagttcaatgttttcatatttgcatttaaaattttgcattgcacaatgtaaaagtaaatggtaaaatccacgtgaataatgtaaaatttc s canFam2.chr10 38565797 141 - 72488556 gcctatgtgagctatgaataatgaactgtgtaatttcattgattctgcggatgagctaaacgctcttatatatccatataaagttg-gcattgcataatctaaaagcaagtggtaaaattgatgttaataacttaaaaattt a score=28048 s hg19.chrUn_gl000248 9099 628 + 39786 atttatttatt-------ttacctagaatgatattaaatagcaattaaaacagcattatgacaagtcaagagagagatagtggaaggaaagaaaaagctttatatt-tagtatctttaacag--cattccccccccacactgcacattttgaaaaagggatcctgcaaattatgtagccatccctgACTAAGATAG--GGAAATGTCTTTGAATTTTAGACTTGAGAAGAGACTATGAAAAGTCTCTCAGAG-----------AACCCTGCTCTGCTCACCAcccatcatattgtatgtgaagatggtaagagctacagggagtcttaaggtcacacagggagcaagtagataaaccaagactggtgcccatgccatctgactccattccttcctagtctagcattcttCACCTAATGTGTGCTCTTCCTTCTGTCAGAAATCCCACCTTATGACTTGGAGATAAGATTTCCCCTTTGCAATTGAAACCATCCAATCAGTACTTGGCTGATGATGTGC-AATTGATATGCCTTCCATCCAAGGCCAGGGAGACTTGGCCAgcacttggttaaaagtaataaatagttttcaggggaaaatctagtggtcggtgttttagtccttgtctttcttgacctaacagcagcattta s canFam2.chr10 38566148 629 - 72488556 ATTTGTTTATTAACATTTGTAATTagcatg---ttaaatagcaaataaaaaaac--catgacaagtta---gagagaccgtggaagaaaggaaaag--tttatgttatagtaccttcaatggtacatttttctt---------gcattttgaacaaggaagcctcCAAATTACGTAGCTAGACTGGATTGAGAGAGAGGGAAGTGTCTTTGAATTATAGCTTTGAGTAGCGGATACGAAAAGCATCTCAGTGGTACTCTGGTCAGGCCTCCTCTGCttatcatcgaccatattgcatttgaagaagctgagagctagaggtggtctcaaggtcacccaagatgcaaatgggtaagccagggctagaactcaggtcatttgactccattctta---agtctagtgttctGCACATGATATGTACTCTTCCTTCTGTTGGGAATCCTACTTTAGGACTTGGAAATAAGATAT-TTCTATGGAAGTTAAACCATCTACTCAGTACATGGGGGCTAATATGCAAAGTAATATGCTTTCCATCCCAGGCCAGGGAGGCTTGACCAGCACTTGGTTAAAAGTAATACATTGTGTTCCAGGGAagatcgagtgggcagtgctttagtcctcatctttcttgacttagcaacaatagtca a score=38925 s hg19.chrUn_gl000248 10911 1152 + 39786 gtcaaacacttgtgtgttttggcctttaggacccaacctcctaccttgctggctgccctcccttagtcgccatcacagattcccctctaccttcctgactttgtatcagtgaagtgtctcaggggtcagctctcagaccttttctc-tttttctgtccatactcattccttt-agtaacctcatgtagcctaatgactcttaacactatctatatgctgattactcatctgtttatacttctagccctgacctctccctgaatttgttctaacatgtctaactgctttcttgacatctgcactctgatgtccaacga-aatcacacactatatctgtaactgagcccttgaatctctcccccagctccaaactaagtcctacttcagttaatggcagc----------------atcaggtcaaaaccct-gcggctctcttgatgctttctcatctttcacacctcacacccaatccatgagcaaatccta--aagcctctaccttcaaaatacattcagaatatggtcattttcctccaccattactgcttcaccttggcccaaa-------------tcacctgcattatgccagtaatctttgaattggtct---cattttggtcctcatctctcttttacccagaagggtctccttgaaccacatgtcggagtgtgtcactcctctattcaaaacctctcaatagtttctcatcttactctaaagaataacccaaaccaaacaatccaaacaagccacagagcctgacagccttcaggcattcagccaccagggccttaggacttcagctctcttgtcccctttgtcccctctctcactctgctctggccatgtggcctccttgctctttctccaactcactgaggactctcccacctcaggcccttcgtccttgctggccctctccctggaatgctctttccccaggaatctggaaggctc-----------------cttccttcacctgctatgggtcattatcagatgtaacccctctcatgaggccttctctggtcaccttgtttaacacggtggccccttctgctccccatgcacattccccatctcccatccctgatttttattccccataacacttatctccatctaacatgccat----ccagttgactttattttctgttcattgtctgtttcc-----ccctgttggaatgtaaTTGCTT s canFam2.chr10 38566777 1088 - 72488556 atcaaatacttgctttgcttggcctcccacattccacctccta---------------------------------agggaggtctccac--------ctttataacattaaagtgtctcaggggtcagttctctgaccttttctcttttttctgtccacactcattcctttaagtgatctcatctagtctaatgagtcttaaaacaatctacatgctaatgactcatctatttatatttctagccctaacctctccctgaattccttctaacatatctgatggcctactggacatctccgctccaatgtctaataagaatcacacatta-----------aagacctcaaattttgccc------tgaaagtgttccccacctcacttaatggcagcttaatcatgccaactgctcaggtcaaaaccttaacagttgtcctga---ctccttattttttacatcttgtgtccaatccatgggcaaaacctatggatatattgccttcaaaatatatccagaatctggccattt---cctaccctcactgctttgctttggcccaagtcactaccatcactcacctgaattattcccataacttttggactgatctccccatttgggccctca----tctgttagccaaaatgatctccttaaactatatgtcagactgtgtcattcctctgctc-aaacctcccaatgatttcttagctaactccgaaaagcagcccaacccttataat-------ggctgcaaagcctgccagcatccagtc---------------ctctcagaccttagccctcatttc---------------ctggctctgctcgagtcatgtgatctccctgttcttcctcaaatttaccagagtctctcaaacctttgggtctttctccttttgtaccttctctgtggaatgctctttccccagaaatctgcagggcttgatttctaaggaaaaaaatcccctcacccccta---------------------ccttcttgtgagtgctttcttgatcacc-tattgaagactgtaacctgctcctctcccaagaaacattctctgtcccttttctctgatccttattccctatagtgcttactaccatttattatgtaatgtagttagttggctttgtgttctatccattgtccatgttcatttatcccattagaatgtaaCTACTT a score=9039 s hg19.chrUn_gl000248 12063 235 + 39786 ATTTGTCTGTCTTGATGTATTTTGTTCAAATATCTAAGCCTGCCTTGCGGTGGGCTGTGGTCTAGGTAACGTGATGGCCAAGGATTTACCAAGGAATAATGAACCACCTCCCCACCTCGACCAAGCTCCATGAATgtctttgactccatattccagcctctacctggaatgtcctttgtctgtttctc-----tgaataccatgccatccttcaaggtctggttgaaaagtgatctcctc s canFam2.chr10 38568036 227 - 72488556 CTCCTTATGTTTTTGTGCACTTTACTCAAGTGTCTGAGCCTTTCATGA---GAGCTAAGGCAAAGATGACCT-ATGGCCAATGATTTGCCCAGATATAATGGACCA---------CTCAGCCAtgccccatgagcctctttgacctcatattctagcctctacctggaatgtgctttgcccatttatctgtgttgaaaatcaggccatctttcaagccttggtttaacagtcatattctc a score=22169 s hg19.chrUn_gl000248 12567 502 + 39786 ctccttccctccctcccttttcccctttctttattctctctttccttccatcatgctttctgtaagactgaagggatcatactatgtatatcatttgacacttagtttttttcaagatgacaaatatcttgacatatttttctatcagcatggagTAGCCTATAGTACTAAAGTTTATTAAACCAGTCCCTGCTGATCACacaaaagtattgcaaagtcttggcacac-cgtctttgcgcacttgcttaggtttttgggtaggacaagttccttaaagtgggttgctgggtcaaaggggatgcacatttttatttgctaaattgctgggttgccttccaaatccataccactgtatactTTAGTATGTGTTCATTTTTATCTCCATAAGGCATCATATAAGAGAGCTCTCC----------TTCTGCATTTCG----CTTAGGTTTTTG---GAAAAGTCAGTCAGTCAAGGTCGGGAAAGAAGAGGATCGGGGAAGGCTTCCAAGAGGAGATCACTTTT s canFam2.chr10 33919805 503 + 72488556 CCCcttcccctccttccttctgtcctcccttc---ctttcttttcttccattattctttctttAAAACCAATGAAATAATACCTTGCATACTATTTGGCAATT--------CTCACCTAACAAATATCTTGATATATGTTTCCATCATCATGGAGTAGTCTATAGAACTAAAGTTTATTAAACCAGGCCCCGCTGACAGtacaaaagtgctacaaagtcttggcacacatatctttgtatacttgctcaggatttt-tgtaggataagttccttgaagtgcattgctgggtcaaagggtatgcacattttaatttactaaatggccag-----ttgccagatATATACCAGTGTGTGCTCTGGTGTATATTCACTTTCTTCCCCATAAGCAGTCATTTAAAGGCTCTAACTTGttttttagttttttattttatttttttaGTTTTCTGGAAGAAGAGTAGATCAATCAAAGTGAGGGAAAGTAAAggtcaaggaaggcttctaagagaatatgactgtt a score=66671 s hg19.chrUn_gl000248 13378 1914 + 39786 TTGTTCTTTACTTTATGCTCCTTCACAGTGTTTGAATTGTATACAAGGACA-----CTTTTACCACAA---GGAGTGATATAAATGTTTGAAAAATCACCTCATAGATGCAGAAGTAGAAAGTATACACGAAGAGTGTAAATTAG-----GTTTTACTTTAAAAGTAATCAATTGTTTAGAAGTGTTAAAAGAAACTGTGGATGAGAAATTGTTACATAATTATCTTTTCAATGAAAATGACAATCGGTTTTGTTTCTCCTCActtccctcatttccacccccccttccttcactcctttccccttctctttcccctcttccTGTGGATGAGAAATTGTTACATTGTTATTAACTTTTCAGTGAAAATGACAATCAGTTTTGTTTCTCCTCACTTCCCTCATTTCCccctccctcctcccttcactcctttccttcctttctccttctccttctccttcccctcttccttcctcctccttcctccactcctgccttcccttcttccttTGTTGTTGTTGTTGGAAGCTGCAGGTATTTCAAGGAGCCAGCAATCCCATTGCAGAACTGATGTAAAGGGACAAAC--AGCATGGAATTAGGGCTGCCCAAATGTAATGCATGCTACACAAAAATGCTTCCAGTGAGTCTATCTGGGGATGAGGGCAGGGAGAAGGAGGAG--AGGTTGGCTTTTAGCTTCACATTGTCCCCGTGCACTCCTGGACCT-GCCATCTGCCCCATGAAAGGCCCCAGTGTTCAGATTGCTGCTGCTGAAACTCCCCTTAGGATCCAGAGTGGGCCCAGGCTCATGGTGCCCTGTGTTCTAGGAGCCACATGATTTCACAAACTCACCCTTGCATTTGCTACATTCTTAGCAGGGCCCTGGAACAAAGGAGACATTGaataaaaacagttgacatttattaagctcttactattatgtgcctgacttaggttaccttttataatttctcaaaaatcctatgaggcaggtatgtaaatctatattttgcagatacagaaactgagtcatagg----ctaagtaatttccctaggcttgtagatctgggatttgaaaccgggt---------tcttagac------actaaggctagtcctttaactacaccctttactgCCTCCAAAAAT----TATGCTGAAT------------------------------GCTCTGATA----TCCTGTCAGGAGATATTTTTCTCTAATAAAATAGGGATGGGAGGTGTGTGTTGGGGGA-------------GCTTTCTAGCTTGTCATTCCTTATGGGCCAGCAGGTTGGTGAGGATTAGAGCCAAAAATCTTTGGGGAAGAGAAAAATGGAACCACATGGTCTGTTCCTGAATTCTCCAACAGATCCCTTTGGTCCCAACCTCCAAGTGAGGCTCATTTTATTCTCTCTAGCTCTACACCCTAGTTTCTCTAGTCTGGAGTCATAAACACTGGTGTATGCAAATTAGGCATCAGAGAAAAGAGAACGG------------------CTGTCATTTGCTACAGTTGGAGTAACCACTAG-AAAGATGGCAGAATCTGTAAAAGAAGAGAGCGTAACAGTGACAGCAGTGGTGGGCACgttgttctctaatgcccattctcccttgttccaaggttaaagaactcctaatttgtagttttatacatggttgtccagagtcaaagctgtatattccagactgttttcaaattagttgtgaccatatgattatgttctg----gtaagatttaagtggaagtgtcatctgataactgctgggagacttccttaaaggggagctgacacattctctcccttcttcttcatcctttttttctttctgttggatgaaatgcaaattggatggcag-gatag-ggcagccatcttgggccatgaggcaggtatagcaatacctgtacttttcagataagaaaactgagaatgcaatgaaagcaacaagctagaaggagcttgactccctgaggtcttcatgga s canFam2.chr10 38569217 1758 - 72488556 TTGCTTTTTACTTT-----TATTCTCAGTGTGTGAATTCTATATGAGTACATATTACTTTTATTATAATGAGGAATAAGATAAATGTTTGAAAGATCACCTTGTAGATGCAGAAA-ATAAAGCTTATGTCAAGATTCTAAATTAGCTTTTTTTTTCCTTTTAAAGTAATCAGTTGT------GTGCTATGGGAAA---------------------------------------AAAGGGACA------------------------------------------------------------------------------CTGTGGAAGTAGAATTGTT-CATTGTTATTGTCTTTTCAGTGAAAATGACAATTGGCTTTGT--------------------------------------------CTTTTCTTCCTTTCTCC---------------CCCCCTTCTTTCCT--------------------------TTCGGTGGCTTTTGGTGTTGCTGAAAGCTGCTGGTATTTCAAGGAGGCAGCCAGACCCTTGCAGAGCTGATATAAAGGGACTCCCTGGGCATGGAATTAGGACCATCT-----CAATGCATGGTACACACAAACACTTTAAGTCA-TCTATTTAGGGAGGAGGGCAGGGAAAAGAAAAAGGTAGTAGGGTGTTTTGCTTCCCATGACCCCTCTGGCTTCCAGGATCTTGCTCTTTCCTTCATAAAAGGCCTCAGTGCTCAGAT-GCTGCTGCCAATTGCTCCCACTGGATCCAGAGTAGCTCCAAGCCTATGGTGCC-TATGCTTC--------CATAACTGCAAGGACTCACTcttatgtttcccacactcttagcacaatcctggcatctagtaggcacttgataaaa-tagctggcatttattgagctcttactattatatgtctgatctgggttacctgttataatttcccaaag-tcctatgaggcaggtacagaaatctgtatttttcagataaggataccaagtcataggaaggttaagtaatttccccaggcttgtagatctgggatttgaaactaggtagtttcaaatcccagaggatttgactcgggctagtccttt---taaccaccatcctGCCTCCAAAGAAACTATGTGTTGAATAAATAAACGCATGATGAGTGGATCAGACCTGCCCTTATGAAGGTCCTGTCAGAAGATATTT--CCCTAATAAAATGGGGGTGGGAGTAGCATGTGTAGGAACTGAGTCATTCACACTTTCTAGCTTGTCATCTCTTGTGAGCCAGCAGCCTGGCTAGGGTTAGGGCCAAAATTCTTTAGGAAAGAGACAAACTGAACCATAGGTTCTGTTCCAGAATTCTCTAACAGATCTGTTTGGCCCTAACTTCCAAGTGAGGTTCATTCTATTCTCCTCATCTCTGCAAACCA------CTAGTTTGGAGTCGTAAACACTAA---GTGCAAAGAAGACAGTGGGGAAAGGAGAACAGGTTCTGAGAAAACCACCTTTTCCACTTGGAACAGCTGAAGTAACCACTAGAAAAAATGGCAGAACTGTTAAAA---------GTAAAAATGATAATAGTGGTGGGCACAttattttctaatatccagcct--cttcttccatggttaaaaagctactaatttatagtcatatatttggtttcctagactcaaggatatatttcccaggctcctttcaaattagatgtggtcatataactattttctggcaagtgagatttgagtggaagtgtcatatgacagcccctgagaaaattccttaagggggaaatgacaca-aatattttttcctctttagcc--tttttattcctgctggctgaaatgcagatgtgatgggagagacagaagcagccatcttgggtcataa------TACATCAATATCTACATTTTGCATATAAGGAAACTAAGAAGGGAGTGAAGGCAATAAGCTAGAAGGA-CTTGAGT-CCTCAGGTCTTCATGGA a score=35076 s hg19.chrUn_gl000248 15885 675 + 39786 ATCTTACAGCATTAGGCATTGAAGAGGGATGACTCCCTTTCTTCACTGTGTTGTGAGGACTCTCAGGGAAGAGCTCTAACTGGCCAATCTTGGTTCAGCTGCTCTTCCTAGAGACCTATCAGTCATTGccaggaagcatgctgtgcaaaagaactgttcttgcagaatgtggctatgtGGATT-----------------------GTATATAAC-GAGCATGTGCTACTTTTATCGTAAGTGATGAGATGAATGTCTGGAGTAATGAGGTAAGTGTGGGACGTGGTGAGTAGGAGGGCATGGGGGGATTCGC-CCCTTCCTAAAAAGGC-AGCGCTGACAGCACACCCC-TAGGTGACCACTAC-GGTGTTCAGGAATAGCAAGAGCAATTCTATTGACAACGgagcaaagtgtggtggaccgggtggaagtcaagagacgcggattctagccctggcaccataaggctatttggcacatctctttcttcagtgggtttcagtttacatatctgtcaagtgatgatgttaaatcagcttgaactagctcagttgttTTCAAAGCTTT--TTTTCGTTTACAGAGGTTTTTGGGGTGCACGGGTTAGGGTGCTAGGGATCCTCACTAGATCTTCTTTCCATTCTCTACAAAACCCGCCCATTTTcacacacacacatgcattgacatg--cactcttacacacttac s canFam2.chr10 38570978 699 - 72488556 ATTTTAcagc-ttag--aatagaaagggatgactctctttctttattctgttgtcagtactctcagggaagaactctgactggcccatcttagttcagctgctctccctggagaccaatcagttgttgccagAAAGTATGCTGTGCAAGAGAACT---CCTGCAGAATGTGTTTATGTGGATTTAATACAATGTGGAGACTGAATTGTATACAATTGAGTATGTGTTACTTTCATAATGAATGGTGAGATAAATATTTGGAGCAATGAGATAAGTGTAGGGACTGGGGAGTAGGAGGGCATAAGTGAGTGGGCACATTTTCTAAAGAGATGAACCTGGACAGCATACCCCTTAGGTGAATACTACAGATGTTCAAGAATGGTGAGAGTGATTCTACTGGTAATGCagcaaagcatcatggaccagttggaacccaggagatctggtttctagctctgacaacataaaactatttggcacatccctttcttcagcaggtcacagtttccacatttgtaaagtggtgagattaaattagCTTGAATTTGCTCCATTGTTTTCAAAGTTTTAAATTTAATTTACAGAAGTTCTTGGGG-GTATCGGTTAGGGTGTTGGGGATCCTCACTAGGCCTTCTTTCCATTCCCTacaaaa-acaaacatcctcatacccatacacacattgacacgtttactcagatgtacttac a score=87641 s hg19.chrUn_gl000248 17123 2252 + 39786 tctcacaaaggtgcacacacacgctctcacacaggtac--acacacacacGTTTAGTGTATGCGGAGTCACATTTGTTCTCCAGAGCTTGTTGGATTGGATGATCTCAAGTGTCCCTCACAAGTTGTCAGCATCCATGGTTCCATTCAAATTGGGAACTTTCCAGGGCTTTGAGCCCTAAATTCTGGAGAGCAGCAGTTGTTACAGAGAAAAGTCATAATGAA---GAGAGTCTAAACAACTATGAGAGACTTTCTACCCTCCTTTGCTCTTCCTCCCCCATCCATCATGGCCAGCAGGCGGGATGTGTCCTTTCACTAGTGATGGAAGATGAAGAACA-TCTGTAGATCCCCAGGGAGCTGCATTTATTAAAAAAAGGTCTGCATA-GCCCTATTA---------------ATACACAATGTCTTGCCCATCCTTGGGTCCATCTATACAGTACTGATCCATCTTTAAATACATGTAAAAATAAAATGCAAACATAGACTATCTGGCAAAAAATAAAATAAAATAAACATATGTAGATGAGGAATAAAATTAAGATGCATGGTATGTTTTGGTTTGGAGCTATTTTCTCAGTGAGCAGTCATCAACGTAAAGAAACT--GATGTGTGGGGCTGCAGAGAAATG-GATTGTCTTGGAGAAG---------------TCTCAGCGCTAAGTCTGGAGTCAGGCGTCTTCTCCCCT--AGGGCAGGCGTGTGCTTCCAATGTTCCTGCTGCTTGGGGCAGGGATGGCCCCGCCATCCTTTGCTATCTCTCTGATCTCTCCACAGGCTGCTATGTCCCTCCGCCTGGTGAGAAGACAGACTCTCCCAAGCACAAAGCCACGCTGTCTTGAGCTGGCACCTTCCTGCGTGGGAACCCAGAATCACTCTCAACAGCCC-TTTCTTTCTCCCTGCAGCCTGTGAGCTGGGGAGGCGGCCAGCTGGGGTGGTTCCCACATTGGGAAACTGGGTGGGGCCTGGGGAGCCCCTTGGCCTTGGTCAAGAAGACAGACCCAGGCCCCTCCCTGGGAATTCTATATAATGCAGAAGTGGCGAGAGAAAGAGAGCTTTGTGGATA--GTCGCCTCCCATTGGGACATGGATTGGTTGGCCACTGACACTGATGTGGGCAGAAAGAAGTGGCT-GTTGTTTTACCAGGGCTGGCACCTGGTTAGGACGAAGCCCAATCC---CCTTTGGAGGGCCCCAGATGGGGTTCAAGTGGGAAA--AAATGGATCTCAGGGCAGAATCTGATGTGGATTCCTTTCTGGGTGTTGAGAAAAACACAAAACAATAACTCTTCCTTTCGCCTCCTAAGAAGTAGAGTAGGTTCAGCAGGATGAAGTAGGTTTCTTGGGATTAAGGGTACGTAGGATGTTCTTTGGCAAAG--GTGGTCATGCTTTGAAAAGGGGGATGCTCTATGGAG---CTGTGGGGAAGAGGGAAGAGGGGAGGTTCCCACATATAGGGTGTTGTGTCAGAAATGAAGAGGG-------AGGCAGCTTCTCCTTC--TCACTATCTCCTCCCCCAGAGAGGGACCCAGCAACAGGAGTCAAGGGTTG--CCCCCAACACAGCTGAGCAGGACCCTCCCCACTGTGGGTCTTGATGCAGAGCATGGGCCGTTCGGTCATTGCTCATGGATGAAACGACCAAGCCTGTCTTCCATGTTTCAGGCACAATAAACAAAAGATTtc---------aagaagctcactgtgtactagggaaggcagacaagccaacaggcagatctgacatagtgccatgatagtggaaggttggcagccatgggagttcccaggagg-gtaccccatcaggacttgaagagccagggatggctttctcgaagaagcaacatttaagctgagagttcaaagatgagttgggcttagtaggatgaaggaggggcagagggcgtattctagacagaaggatttgtacgtgcaaaggcttagggatgagagaaagatggtgagttccaagagttcaatacagctgaagGTTTTACCATATGTAAGTTTCCCCAAATGAGG-----TGATGCCAGAGAAATGAGCGTGGCTCTGAT-GTGCAGGACAGTGCTGAGGAGTATAGGCTTTCTCCTGGGGGCAAAATCATCTCCTGGGAGCCCTGATGGGTATGGAGCTCCAGAGTGGCACAATTGC-ATATGAGCTACTCTGTGGAGG------TGTGGCTACTCTGTGGGAGTTGGACTCAAAGGGGA------TAAAGGC-GGGGAGGCTGTTGCTGAAATCCAGGCAAGAGATGGCAAGGGTGAGAGTG--------------------------------------------------------------TGGATAGTGGCACAG--------------------------------------------------------------GGGATGAGTGCTGG s canFam2.chr10 38571677 2320 - 72488556 tctcacacacct-tacaccctcgcccccacacatacactcatacacacacataTGGTGGACTGTGAATCATC------------AGTTTGCTGGATTGCATGATCTCATGTGTCCCTTACAAGTTCTGAATGTCCATGAGTCTATACACATTGGGAACTGTCTGAGGCTTTGAGCCTAAAATTCTAGAGAACAGCAGTTGATACAGAGAGAAGTAATAATGATTATGAAGGTCCAAACAAATGTCTAGGACTTTCTAGTCTCCTTTGCTTTTGCTCTCCCATTTGCTATAGCC-----------TGTGTCTTCT-ACTAGTGGCAGAAGACAAAGTGTAATCTGTATACCTCCGAGGTGTTGCACTTATGAAAAAAAGATCTGCATAAGTCTTATTATGCATAAGTCTTATTATACATAGTATCTTGCCCATCTACGGGGATCTCT-------------CTATCTTTAAATA----------------------------------------------------------TATGTAGATTAAGAACAAAATTAGGATGTATTGTATTTTTTAGTTTGGGGATATTTTCTGAATCAACAGTTACTAAGGTAGAGAAACTCTGGTGTGTGGGGTTTGAGAGAACTTTGGTAGTCTTGGAGAAGGCTGGGAACAGCTTTTCTCAGAGTTAAGTTTGG-GTCAGGAGCCTTCTCCCCTTAAAGGCAGGTATGT--TTGCAGT----TTGTTGCTTGGGGCAGGGATGAGTCCATCATCCTCACTGGTCTTTCTGATCCCTCCTAAGGACATGATTTCCCTCTGCCTGGTAAGAGGACAGATTCTGTCAAGCACAAAGCCATGCTGTCTCGAGCTGGCACCTTCCTGCGTGGGAACTCAAAGCCACTCTCAAGAGCCCTTTTCTTTCTCTCTGCAGCCTGTGAGCCAGGGAGGCAGCCAGCT-GGGTGGTTCCCACATTGAGAAACTGGGTGGGGCCTGGGGAACCCTTTGGCCTTGGTGGAGGAGCCAGACCAAGGCTCCTCCCTGGGAATTCTATATAATTCAGAAATGGCCAGAGAAAGAGAGCTTTGTGGAGAAGGTCCCCTCCCATCAGGCCA-AGACTGGCTGGCCCCTGACACTGATGTGGGCAGAGAAAAGTGGCTGGCTGTTTTAT---------CACTTGGCTAGGCTGGGGCCCAGTCCTGTCCTTCTGTGGGCCCCGGATGGTGTGTAAATTGGGCATGACATGGAACTGTATGGAGAGTGTGATGTGGAT-------TGGGTGATGTTACAAA-ACAAAATGAAAACAC-TCCTTTTTCCTCC-AGGCAATAGAGGAGGTTTAGAAAAACAAACAAAATCTCTTGGGATTGAGAATAGGTGAGAAATTCTTTGGCAAAGTAAGTGTCATGTTTTGGAAAAAGGGGTGCTCTATGGAGACCTGGTGAAGGAGAGAGAAGAGAGGAGGTCTCTATGCATAGGACACTGTGTCAGAAATGGAGAGGGATGAGCCAGGTGGTTTTTCCTTCATTCACTGTCCTCTCTTCCTGAAAGGGATCTAGTAGCATGAATTAAGGTTTGTTCACCCAACAGAACCAGTCAGGACCCTCACCACCATGGGCCTTGATGCAAATCACTGACTGTTTTGTCAGTGCACGTGGATGAAATGACTGAATATGTATTCCATGTCCCAGACACAATACATGAGAGATTCCCCCTAAATTAAggagttccccatctagtagggaaagcagatgagccaacaggcaaatttgatatagcaccatgatagagtagcacagggtgctgt-gcagatcctggcaggtaaacctctttaggacttcaggagccaggga-agttttctggaggaagcagtgtttaagctgagaattcaaggataaagtgggattagtcagatgaacaaggggttggg---gtgttctagaaagaaggaattgcacctacaaaagcttggtggtgaaaggaagAAGTTATGCTCCAGGACTTCAATATGGCCAAAGA-TTTACTCTATGTAAGT----CAAAGAGAGGTTATATGATGCTAGAGAAATGAGCCTGGGCCTAATCAGGCAGGATGGTGTCAAGGAGTTTGGACATCATCCTGGGGCCATAG---------AGGAGCCTT-ACGAATACtgagccc--aggtggcatgatcaagatgtgag-----ctttggagggcttgctgtggctac-ctttggatgctagatttgaaaagggtaagactaaaggcttggaaggctatcgc-gaaacccaggcaagagatggtgAGGATATGAGGGCCAATCTCAGTCTGGCATCGGCTCATGATCATTTTATCATCGCCCTCACTCCTGGTTGATGTTGGGCAATGTGACAGCTCACCAGAACTTATGGAAGCTGTCAGGAGCCATATCATCACATCTTCAGCATTTCTTGCCTGGGTTCAGCGAAGG a score=89177 s hg19.chrUn_gl000248 19375 2411 + 39786 GCGGGA--GGGGACCCAGATG-GAGGGCAGCCTAGATATGGGTAGAGTAGGAGAGGGAGAAGGAGAGGTCAAAGGTGATGCCAGGTTTCTGGTTTAGCAGAGACTGAGATTGTTTTCCAAGCTGTGAATTGCACCCTTCCAGCTTTGGGGAAGCCATTTCTGCAGCCAGTCTTGTCTGTCCCTGAGGGATGGTTCTGGAGTTGGAATTGGGGTGGGGAGGCACCTGGGAAAGCGATGTTCCAGTGAAGATAGTGGTTCTGATAGAAAG-ACTGGACTCTGGCCTGCATATTTCTCATGCAAATCTGccaccagaatgttcatgtcatgagggaaggggctttgcttctgttgctctcttttgttgctacaggtaatgcctatcagtgctacccgttgctagaataatgcctgacacacaggagatgcac-agaaaatgtttgttgaatgGGAAAATGATGGTGGCTACAGGTACAGGATTGGGAGGATTTACCATTCCAATCAGTGAAATGGGATAATTGGATCCCTTTGATATGTCACAGAAACGTC--------ACTCTGGTTTCATCATTCCTTTTGATCAAAGGGTGTCTAAGATGGTGCAGATGACCAGAATGGAGAGAAGAGGGATAATGGCATATGTATGCACACATAGGTATGTAAAGTACACGCCCTAGATGATAAACAAGGCAATACAC----CATGATGGCTTAATAAC--TTTCATTGTCATCATCAGCATGGGTATCATCACTAGCTTAGattgatacgttaacgtgtaccagacaccaaaacttgcaggcgctttatatccattatctcatctaatcatcacagaaaccctatggaggagatcctgatatgattatagttggactcatgcagaaactgagactcagagaggtaacagatgtaccccttgtcacacacctcagctgtgccgggccaaagactgaacaaagttctgtctgaat-ctaaggccACTTTCCCTCTAGTCTGAGCTCTTGTTTCATGGAAGAAACAAA----TGTGGTTGAAACAGAAACTAAGGGTAGAGAGAAAA-------CTCTGCAATGTCCCAGGAGGCCTCTAGGCTTGGTAAGAGTCCAAATGGGCCGGAGAACTTTCTTTGGCCCCTGACCTGGCTGGACAGTCAGCAGGAAGTATCATCTTGTGGGTTTGTTAATTTACC----ATCCACCTGCAAGCCTTGTCATATA-TCTTCCAGACCTGACAAAAT--------ACCCTCACCTAACACAACCCTGTCCCTGCTTAGTGTCTTTTCAAAACCACCACCAAATCTG--------AGAAGGGAGAGCCAGGAGCAGGTGCTTGCCACATCCTCTCCTGGAATCAGAGTGCAGCAACCTAGGGCTATTGTCCAGCTGCCCGGGACATGGCATCTTAGGTTGGGGTGATTCTGGAGACACTGGGAGAACAGCTGGCATCTGGTGTGCTGGGCTGATGCTGGAGACGTTATTAAAAAGTGCCTCCTGCAACTCTGCACC-CCACCCCAGCCCCAGAGTAACACGTTTCTTCTCTTTCACCCAAGGGTACCCTCTAGAGAGATGAGTCACTGCTCTGGGGGAAGGAAGTTACTATGGAATCTGAAATCAAA---GGTGCCACTTTTCTGATTATTAAGCTAAAAGCCAGCTAAGCTGCATGAAGGCTGACAGATTCAGTTGCCTGCTTTTGTTGTTTTTCTTCTCACTGCAAACTTGATGAAAGTCTCCCTGAGCTAGCAAGTGGTGAGCG-GGAGGCGAGATCACAGACAGGGACCCAGTGAGGGGGAAGAATTTCCCCTTTGCCCTAGGAGCCCCATGAT-GGCCAGAAACCTAATCAGAGCCCAGGTGTCCTGCTGGTTGTTGTTGCATGAGGACCACAGGTGAACTG-------GAGGAAATATCTGTCTTGAAGACATTGTTCAGCTCTCATCCAAACTGTCATTGTGTGGTCAATCCCCTATCCAGTGGTCCAGAGCACTCTTCCAGCCCCAGGATGAACTCTGAGGATGAAG--------------------------------------------ACTACCTGAAAGGTATCTCAGATGATACTGGCCCAAGATCTCCCCTGAGGAGCCCTCCCAGCCCCTGCCCTTG-AGCACGCATATTGAAAGAAATACTGTCTTTCATCAAGCCTCCTGCCTT-----CACAGTGTGTCCACTTGCAGAGAAGTTCTGGGTGATGTCCACAATGCTGGTTCATTAAGGCGTATCCCAGGGGCTGGAAGCCAGTCATCT-CATCAGGG----AAGGGCCTGGGTATTTGGAAGGAGCTGGGCAGAGGCAACAGGTCCCAGACAGCTTGGCACCAGCAAGATTTATCTGGGCATTTGTCA--GAACTGCCAGCTTGTCCTAGGGAGTTTCCCTATCTGCAGAAGCCCGGAGGTGTGTGGACAGGGCCCTGTGCCAGTGCAAAGTCTCAGTGTAGCCTCCTTCTCCAGACAAACACCAATCATAACA s canFam2.chr10 38574130 2309 - 72488556 GTGGGATTTGGGTGCCAGGTGAGGGGAAAGGCTGGCTCTGGGGGGTGATGGGGAGGGAGAAAGGGGAGGCAAAGGTGATTCCAAGTTTCTGGCTCAATAGAGATTGAGA----TTTCCAAGCTGTGAATTGTACACTTCTAGTTCTGATGAAGCCAGCTTTGCAGCC-----CATCTGTCCCTGAGGAATGGTTCTGCAGCTGGGGTTGGGCTAGGGGG----CAGGGGAAGGGATGTTCCCACAAAGACAGTGGTCCTGACAGAAAGAAACAGACTATGgtttgcatatttatcatctgtcttccccatcaaaatgttctcactatgactgta--aactttg----tattgttctctattgtatcc-cagt---tgcctagca--------------cagaataatgcctagcacacaggaaactcacaaaaaaatatttgttcagtggaaaaatGATGGAGGCTACAGATAAAGGGTCAAG-GGATTTGCCACTCCAATTAGTGGAATGAAATTATTGGGACCCTTTGAGATGTCACAGAAACGTCATAAAATGATTCTGGTTTCATCATTCTCCTTTATCAAAGGGTGACTAGGATGGTGGAAATGAACTGGATGAGGAGAAGA---ATGGTGGCATTTATATGCACATATGAATATATGTAGTACATAGCCTAGGTAATCAATAAGTAAATACACACATAGTGATAGTTGAGTAACAGTTTCATTGTCATCATCAACATCACCACCATCCTCAGCTTTGACTAAGACCTCCCTGTGCACCAGGAACC-AAACTCATAGATGTTCTGTATACACTATTTC----AATTGTTACAATAGCTCTAGGGAGTAGATCTTGCTA-------------------------------------------------------------------------------------------TGAACACAGGTCTCTCTGACTCCTAAGGTCACCTTCCCTCTATTCCAAGCTCCTTTCTCAGATAAGAAATAAAAAGTTATGGTTGCAATAGAGACTGCTGGAAGAGAAAAAAGAAAAATCCCTGCAATGTCCCAAGAGACCTTCAGGTTTGCT-AGAGTCTGAATGGGCTGGAGAGATCTGCTTGGGCCCTGGCCAGGCTGGGCAGTTAGTGGAAAGTTGTATCTTGTTGGTTGGTTTCTTTATCAAGAAATTATATGCAGGCCTTGTCATATAGTTTTCCAGAACTGACAAAACACCAAGAAACCCTCACCTTGCACAAC---------ACTTAGTTTCTATCTGAAACTACC-CTAATTCTGAGTCCCCCAGGGGGGAGAGCCAGGAGCAGGCGCCTGCGATATTCCCTACAGGGATCACAGGGTGGCCACTTGGA---ATTGTCCA---------------GCAGCTGAGCCTGGGGTGATTCCAGAGTCA----AATGATGGTGGCTGTCTGGTATGATAGGTAGACAGTGGACATGTTAGAAACATGTGCTTTATACAACTCTGTACCTTCACCCTGGCCCTAGAACATCAAATTTCTTCTCTTGCATCCAGGGACACCCTCTGCAGAGATGAGTAATAGCTTTGGGGGAAG---GTTGCTATGGAACCCAAGATCAAAGGTGGTGCCACATTGATGAGTATTAAGCTAAATGATGGCTAAG-----TGAAGGGTGACATATTCACTTGCCTGCTTGTGTTCTTTTT------ACTGCACATTGGATGAAAACTGCCCTGTAAT----GGTGATGAGGGCTGAAGTGAGACCACAGGCAGGGACCAAGTGAGGGGGGCAGAAGCTTCCTCTG-CCTGGAAGACCCCTGAGAGGCCAGAAGCTAAATCAGTGCTCAGGTAACCTGAT-TTTGCTGTCCTATAAAGGACCCAGATGGATTGCCCAGCAGAGGAAACATCTGCCCTCAAGTCATTGTTCACCTCTTA-CCAAACTGCCATTGTGTGATCAAT-CCCTATTCAATGATCCAGGACACTCTTAAGCCCCCAGAATAGACACTGAGGAAAAGGTGGAGTGAAACAGGGAAAGAAAAAGCAAATGCCCCATCTGGATCAACACCTGACAGGTATCTTAGATGACACCAGCCTAAGATCTCCTCTAAGGA-----TCCAGCTCCTGCCCCAGTTGCATGTGTATCAAAAGCAATA------TTCATT--GCCCCTCACCTTCAAAGCACAATGTGTTGGCTTGGAGAGAAATTTTGAGTAATGTCCACAATGCTTGTCCATCAAGGTGTGTCACAAGGATTGGAAACCAGTCATCTCCACCTGGGTACTTAGTGATTTGGTATTTAGAAGAAT---------GGCAACAGGTCCCAGACAGCTTGGCACCTACAAGATTTCTCTCCGCATTTGTCAGGGAAATGTCAGCTTGTTTTAGGGAGTTTCCCTATCTGCA-AAGCCTGAAGGTGTGTCAAAAGGGCCCAGTGCCAACTC--AGTCTCAATCTGGCCTCCTTCTTCA-------AGGAGTCATACCA a score=19875 s hg19.chrUn_gl000248 22136 668 + 39786 tccattttcaaatggcacccacgtgacaggccttgtgcggccagctctacatgatgtcatcacatcct--tctgagaaccatgcacacttgggaattattcttccccttt--acaggtgagaaaacaaagctcagagGCT-------------GGTGACAGAACCACGACAATTTGAAGTCTAATCAGTATGGTTTC-AAAGCTCAAATTCTTTGCAATTAAactcaacac-atacatattggacatacatgttg---tggcagacgcaatgctagactcaggggcttcagagatggataacgctgttcctatcctggaggagcttacc----------------agaagctttgacatacccctgaaaatgctctagcacctgggattaaggaggcttagagga--------------------aggaggaattcactctttctgggtaatcggtgatga---------------------------------------------------------------------------------------gtttttcagaagcagtgaTCCTCTATCCAGCTTTCG---------AGGAGTGTGCCAGGGGAAGAAGACCCTTCCAAATGCGCTAGTATGTAACACATCtgtactaggatgtttactgtaccattgttcatggaagactgcagggcagtgtgcataccataaatcctcattggtaggggactggtggaataaattgtggctcaatcacatcaaagaatattttgaaaccattgaaagaaacaaattagagtcatatcaaaatgacacaagattg s canFam2.chr10 38576439 775 - 72488556 TCCATTTTTTAACACCATCCATATGCCAGGCCAAGTG---------CTACATGATCTCAACTCTACCCAGTTTATTCAACTTACACA------GattattttcctcctttacacagaggagaaaactaagctcagaagctaagtgacacaataagtgacagaaccatggtgattcaaactccagccagtctggtttcaaaagctcaaactctttgcaATATAATTCAATATGATACTTATCAGACACATAAGGGAAGCAGGcaggcactgttctagactcaggggattctgagataaataggactgtcccagcactcaaggagcttcctgtcaaatACACTTAAGAGAAATTTCAACATACTCCT-AAAACGCTATAGCA---GAGAT---GTAAGCATAGAGGACTAGGAAGATAGATGAGCAGGGCAGGGATTCACTCTTTCTGGGTAATCAGTGATGCtttttttttaaaaaaaaaaattaaattaaatttgcaaaaaataaaaaataataaaaaaataaattCAATTTGCCAACATATGATGCTTTTTTTCAGAAGGAGAGACTCCTGAGAGACTTTTTAACAATGAGCAGAAGTGTTCCAAGAGGATAAGAACCTTCCAAAT------GTATATAAGACATACATTCTAGGATGTTTACCATACCCTTGTTCACAGAAGATTTGGGAG-------------------GCTCATTGGTAGCAGAATGGCTGAATTAACTGCAGTTCAATCACACCAAGGAATATTTTGAAACCATTAGAAGGAGTGGATTAGAGTTGTATCCAAATGACATAAGATCT a score=28725 s hg19.chrUn_gl000248 23130 690 + 39786 ttgagtgaaaagcaagctggagagaag-tgtgtGTGTGTGTACACAGATAGGCATGTATGTTGATAGGAATTCAgagcaagggattccctgcagaagacacagcatggtcaaaggtaaggagatgtaaa-taatgtctagggaactacaaagagctcagttctgctggagtgtcatgaggaaggtgaggcctcagagggaggcaggaagttcccaggagctgaatagtAGGTGTGGTTGGAATGAG----AGTTTGATTTGGCAATTGGATAGGCATCTTTAGGAACTGGCCCAATCTGGGGAGATTCGTGGCTGAATTCAGGCTGGGATTGGGTGTTGTAATGGTCACAGCCCTACAGAAAAGGTGGAAA-TGAATTTGACTCTAGAATGGAAGTCCAGTCAATGgagtgaagcagaacattggacaggagaatccaggcacctgcggcccagtccagtctagcacaaactcactgtgggctctcagatgtcccttttcctttctgaatctcTCCTGTCTATTCCCACTTCTCTCCAAATGTGTGATGTCAGATCACACAGAACGCCCCAGCCACATCCAGGCAAGGTCCCTCAACAATTAGTCCAGGCAGGACAACAAACTCTAACCACATATCTGTCCCCACAGCTTCACTGAAAGTACTCTTACTAAGATCATCCTTGTCGTTGAAAGACCTt s canFam2.chr10 38577215 672 - 72488556 TTGAGTGAATAGAAAGTTGCAGAAGTGTTTTGCATGTGCTTGCATGTATGGACACGCAC--------AAATCCAT----ACACATTCCTTGCA-AAGACATAGTCAGGTCAAAGTCAAGGAGATGTAAACCACTATTAGGGGAACTAACAAGAGCACAGTTCTGCTCTAGTGTCATAAGGAAGGTGAGTCCTCAGAGGGAATCAGGAGGTTCCCAGGAATTGAAAAGCAGGTGTGGTTAGAGTGAGGGTTGGTTTACTTTGGCAATTGGACAGGCATTTTCTGGTGTTGGCTTGAGCTGAGAAGACTCAAGGCTGCATTCCAACAGGGATTTGCTGTTGCAAGGGT--CAGTTGTAGAGAGCAGATCAAAACTGAATTTGGACCTAGAATGGGAGATGAGGTGGTTG-GTGAAGTAGGGGAAATGTCCAGGGTATCCAGGCATTTGTGGTTCAGTCCAGTCTAGCAGAGACTTATTG-GGATTTCCAGA-GTCCCTTCCCCTCTCTAGACTTTTCCTGTCTACTCCCAAATCTCTCAAAGTGTGGGATGTCAGATCCCACATGAT------ACCATACCCAGGAAAGATCCTTTAACAATTAGCCCCAGCAAGACAATGAGctctaa-cacatctctatctctactgctccactgaaagagctcttgctaagatcatcaatgtctcccaaaggcttt a score=5731 s hg19.chrUn_gl000248 23964 163 + 39786 ctctttcttctttcatcagaagca-tttgactaaggagccatcctctcctttgc-aaaacactattca-tctcagcttgtgtgacaggacaactcttatggtttttcttctctt-------ccttcatattctttgctggctcttcttTTTTAAACTCTGAAATTTAActgct s canFam2.chr10 38577887 170 - 72488556 ctctttcttctttccacaaaagtgttttgactcaggagccatgccttccttcatgaaaatgctttgaactcttgacttgtacgataggat-actcttctgcattttcttctcccatactggccttgatcttctttgctggtttctcttgcttta--tctaaaatcttaatgct a score=25588 s hg19.chrUn_gl000248 25647 484 + 39786 attctacttgatagtactgtttgtttttcccttgtttgtcttccccagaagactgtcaactctttgaggacagaggtcatgctctaattttgtctgtattccacagcatctagttcaGTGTGTTTTTCAAATCAAGACACCTTGTTGAATGGGATGGGATCTGGCTGACAGCACTCTCACACCGTTGCTTGCACAGACTGGCCAACTGGTTTACCTGGTTTGCCCAACAAAGCCTC--CTTAGATCTAGGTTGACTCCCTGTTCCAGAAGGCAATCCTGTGTACTCAACTTGCTAG-TAGGTTTCATCC-TTTGGATTCAGAATTTCCTATTTGTTCAGAGTTGTAAATTTCAGTG-CCAAGCTACAAGTCCAACTCCATTCATTATCCTCTCTTTTATGTTCATGGCATATTTCAAAGTCAACATCTAAAGTCAAAAATCAAAGGATTTCCAAACTTAGTTTTTCCTCTCTCTTGAGGTTCCTTCCAT s canFam2.chr10 38579987 474 - 72488556 aTTCTG--TGATAGTAAAATGTGttgttttcttgcttgtctcccctaacagattgtaagcttcatgaggacagagtacatgttttatgtttctctgtatcct------cCCAGATCATTGTATATTTCAATTCAATACACCTTGTTGAATGGGATGGAATCTGGCTGATGGCACTCTCACAGCATTGCTTGTGTAGACTGGCCAA-TCGTTTACTTGCTTTACCCAATAAAGCCTCTTTTTAGGCCAAGGTTGACTCCCTGTTTCAGAGGCTGTCCTTTTCTACTCAGCTTGCTAGATGGTTTTCATCCTTTTGGATTCAGATTTTCCTATTTATTCAGAGTTGTAAATGTCAACGTCCAAACTACAATTCCAACTCCATTCATTGCCCTCTCTT---GGCTCATGGTGTATTTCAAAATCAACATTTGAAGTCAAGAATTGAAGAGTTTCCAAAATTAATTTT---CCTCTCTTCAGGTTCCTTCTGT a score=9150 s hg19.chrUn_gl000248 26151 190 + 39786 ATCAAATGTCCCAGCTCCAGAAATGCAGGCTGGGCTGACT---TTTTTCTATGCTCTAGAAGAAAGCTGTGAAACTCAGCAAGATGTGATTCCTCCCCTTCTCCACATATCTTCACTTGTTAAATTCTACTTCTTATTTAAAGCTCAGCACAAT-CAATCTTTTCTATGTTTCACATATCA---CTTGCCATGATAA s canFam2.chr10 38580561 195 - 72488556 TTTAAAAATCCCAGTTCCAGGCATGTAGGCTGGGCAAAATAACTCCTTCCAT-TTCTAGAAGAAAGTTGTGAAGCTCAGCAA-ATATGGTTCTTCCTCTTCTCCACATATCTTCATTTATTACATTTTACTCACCCTGTAGGGCTCAGAACAATGCAGTCTTTTCCATGTTTCACTTACCCACTTTTGTCATAATAA a score=25400 s hg19.chrUn_gl000248 26687 626 + 39786 ttggcaatgtctggaTATttaccttgtgcctggatttgttctagatacactttcacctacatgccctctaatcttctcaacagccatggaacacacatatgatcccatttaccatatgagaaaaccacgactcagagaggctgaggttc--------------ctggtcagtatgtgaccagggcaagactggacttcagctc-acctgaccaggaagacagtgctttctccacCCTATTTGGCTGTTGCAGCTGCTGACTCAATCCACCATTCACAATAGTACCTCACtttattcaacaaatattttgcaaacacttcctatgcaccaggcagtgttctaagcactcagaacacattagtggatatagcaaacaaaagcccatgaaggcatgtagatagttatattctagttgtgggagacatactaaaaacgatcaatagataaaacaagttatgaagtactagaaagtaaaaagaggtatg-aaatgaactgcagggcaagtgggatagagagtcctggaggtatgggatggtggacacaatttcaaa-tacagctgtcacgaagccacattatgatggtgatgtttgagccgagacttagcagaggtaagagagttaatcatgtgggattggggaaaga s canFam2.chr10 38580758 608 - 72488556 TTAGGAATAactgagcacctactatgtgcct-----tgtcctaaatgc--tttcacctatataacctctgttcttcccaacagctatggaatttacatatcatcccatttgccatatgagaaaaccaagactcacagaagcagaggtgctcaaccatggttacctaactagtaggtgaccagg-caagactgaagttcatctctgcctgactgggaagattatgcttttcc-------------tgtcacagctgctgactcAGTTCACCATCCTCAGTGGCATGTCACCttattcaacaaatattaatcaaacacctcctgtgtgccaggaactgctctaaggaatcaagatgca--agtgaatatagcaaa----agcccttgcc--tttataga-aatcatagtctactggaaggagatacac-aaaaatgataaacagaattaaaaaggtatgaagtaatagaaagtaataagtggtatggaaaaaaaaaacagtgtgagggggctagagagtcctgagatcatgtggtagtaaacacagtttcaaaataaagttgttgagaagtcatgttgagacagtgatatttaagccaatatttgaaagaaataagacagt----catgtaggattggggaaaga a score=24708 s hg19.chrUn_gl000248 27313 595 + 39786 CGATGTAGCTTGGTGAAGTGAGGGAGGAGAGGGCACGGGAGATGAGGGGCAGCAGGGGTTGCAGAGG-GTGGAGAGGATtggttctcaaccaggggccattctgaccccaggggatatgggcaatgtctggagacatttttggttgtcacaacttgggagtgggggtgggatgctactggcctctagtaggcaaaggtcagggattctgcaaaacatcctacaatgcacaag-------tctgcccccacaaaatagaattatccagctccaaatatcaatcgtgtagagactgagagacT--GGTTGAGAGCC-----------------------------------AAGATCTTTTgaggatcttgaacagaggagtgacatgatttgacttacattttgcaagatgcctctggctgctgtattgagaat----agactataaggataagggcaagggaggaagcagggacaccag-tctggagattactgcagtcacccaggaattagatgTAGGACGACTCATCCCCTTCTAGGGTGGAAGGCCCTGGAAGCCAGGGAGGAAGGGCAGTagcatttacggagcacccagagggtgctaggctttcatatacattatctctttagaccccaTCTGATCTTT s canFam2.chr10 38581468 621 - 72488556 cgatgtagcttggtgttgtgagaggggagaaggtataggaaacaagat-cag-aggggctgcagatgtgtggaatgg--tggttctcaatcaaggatgatactgaccctgggggtgggggtatttgtctggaaccatttttgattgtcacaatattggag---gggtag-atgctattggcatatagtgaacaaaggccagtgatgctgctaagcatcctacattacatgggaaactcctcttcccttctaaaaaagaattatcctgatccatatatcaataatgttgagactgaggaactctggtgtagagccctataggactttggcttttgctgtgtgtcagatgtagcatcttttgagaatttagaacagaggagtgtcct---ctgctttatactttgaaagg-------aggtgctgtgttgagaatgaatagactgtgggga-agaggaaagggaggaagcaggaagacaaaacctggaggtgaccaccataccccaggcatgagatatggGGTGACTCATCCCCTTCT----TGGAAGGTCTTGGAAGCCAGGTAAGAAGGGAAGTAACATT-ACTGAGCACCCAGAGAGTGCCAAGCTTTCATGTTCATTACCTCTTTAGACTGTATCTGATCTTT a score=46776 s hg19.chrUn_gl000248 27908 1248 + 39786 ATTAGTCCCAGCACTTGGATTGGAGTTTAGTTGTTTAAGTAGTTTGACATCGCTGGATGTAAATGAGGCTTTGAGTAGAAAGAAGAGAAGGTTTTTATTGCACAGCGTTTGACGAATCAGTA--TTTATTCTGGGTGATGTTATTTTTCCACCAA----TAGGGTGGATGCCTGGACTGCAGGT-AGGCACATGCCATTGTAAAGGCACACGAAGAAA-CTCTTGGAGAAGCCCAGACAGAGCTCTCCTGTGGTACCCATGTGTTATCATTTAGCAGATATGCCCTTGGAAGGTGCCTTGGTGAGGCTAGCTGTGACACATTCCGTTAAGAATAAACATTTGCATAGGGCACCTGAAGCCAGGCACCTGTGGCCACTTTTCCTGGAAGAGCCAAGCTCTTGAAAATATCTACATTAGGGTCTTTCCTCCAAGAACTGGAAGGTCATCCATGCAAGAGTGGACAAATAGGTGTGATGCGGG-------TTGCAGAGGAGCAAGAAGCTCAGCCAATAAAATGCCAG-ATGGTGACTCACAGCAAGTGATGATG-GAGTGAGCTTGTTTGTGTCATGCCAGTGAAATAATTCATGACCATATCAATGGTGTGGTCCTGCTCTTTCTTCTGCGGAGGGGAGCGGGGTGGGGGGCAGTGCAGGAGATGATGTTGATG-ACATTTTCTGCCTCTTAATTGCCTTCCCCCTTCCTGGGGTAGGTGATCAGGCTGACCAAACCCCTCCTCCTTAGAACTCTCTCCTCTCTAGGCTTCCATGGCCATACTTTTTATGCCCTCAGCTCCTTCCTGGTGCCATTTCTTCTGCCTGGA------ATGCTTgtttcttagggctcctgtagctctgcttcacagatcgggtggtttaaaaacagcagaaatgtat--tctcgcagttctggaggctggaagtctgaaataa----------------------------------gtagggg--------cttcctcttcctagcttctggtggttgatggcaatctttggcgttccttggcttacagctgtgtcactccag--tctctgcctctgtcaccacatggtgatc-ccgtgtgtttctattttcacatggccgtcttctataaggacaacagtgatattgTGGTGACATCTA-------TAAGATGTCTTCat----gctggtcctaatgct--cagtacttcagaaggaagtatttacttggaaatagtgtccttgcagatgtcattGTCCTTACCTTTTTTATGTGTGTTGGGGGGAATACAATTTAACCCATAACAATACCCTTCTCTACTTTCCCCTCATAGT s canFam2.chr10 38582326 1260 - 72488556 ATTAGCCCCAGCACTTAGATTGGAGTT---------AAGTAGCTTGACATCCCTGAATGCAAACAAGAATTTCAGTAGAAAGAA---AATGTTTTTATTTTACACTTGTTGGCCATTCAGAAAATTTGTTCTGGATGATGCTATTTCTCTACCAACAGATAGAGTAGAAGCCTGG-TTGCAGGTTAGGCACATGCCCTTCCAGAGGCACATGAAGAAATCTGTTGGAGACACCCAGGTGGAACTCTCTTGTGGTCCCCTTATGTTATCATTCTGCAAACATGCCCTTGGGATGTACCTTGAAGAGGCTA----TTACACATTCTGCTAAGAATAGACACTTGCACCAGGCACCTGAAGG-----AGTTGATACCATTCTTCCCAGCAGAGCCAACCCCTTGAAAATGTCTATATTAGGGTCTTTTCTCCAAAGATTGGAAAGTCATCCATACAAGACCAGACAAGCATATATAAGGGAGGCAGGCCATTGAAGGAGAGCAGGAAGCTGAGCCAATAAAATTCCTGAATGGTGACTCATACTAAGCAGTGATGAAAGTGAACTTGTCTCAGTCATGCCAGTGGAATAATTCATGGTCACATCAATACTATGGTCCTGCTC-TACTTCTGT---------TGGGGAGAGGACTAGTGCAGTGGATATCGCTGGTGCACCTTTTCTCCATCTTTATCACCCTCCACA-TCCTAAGACAGGTGATCAGGCTGGCCACGCC---ACTTATTGGAATGCTCTCCTCTCAAGGCTTCTATGGCCATACTTTTTATCCCTTCAGC-CAGTACTGAAATAATTTCTTCTGCTTAGCATTACtatattagttttctagtgctgctgta----------acagattaggtggcttaaaag-agcagaaatttatggtctcacagttctggaggctagaattctgaaatcaaggggttgtcaggggcatgttccctctgaaatctgtaggggaatcctttcttcctcttcctagcttctggtccttttcagcaatcttgggtgtt-cttgggttgcagctacatcactccaacctctcttcctctatcaccagatggtgttcttcccatgtctctgtgttcacatggtcatct--tataataacaccagtcatttggagtagggacccacccaactcaatatgacctcatcttaactaatttcaacaatgaccctatttccaaataaagt-catattctgaagtactgggggggggggtagga----------cttcaacatatctttttgagaggacacatttcaattcataacaATGTCTTTCT----------TCCATAGT a score=22445 s hg19.chrUn_gl000248 29285 460 + 39786 GACTTTTGGTCCACTAGTATTCATTCCTAAAAGGAACAATTCCTATCCCACC-CATGTGATCCCAATTGAGCATCAAATATGATGCATAGATTCCCAAACAACAGtggttaatcagagtgctgcatccctcccaggaacaatgattgatccagtgg-gggaacatgacccaagaagggacgatcacagttcttctgtgaaatactgaaataaggcgttaggagagtgagtcttcc------tttcttttgaacacagttggagcttgcagaagccttcttgtctaccacataaagtgatctaatctaaataatgaagcaggaacaagcagagcagagagaggagacagagatagagccctgatgacatcatttcaggtcctagatccagctgtgcctgaagccattggccctggaattctaagaaacaaaaacaa-tgactttcctttttctcttaactacttggagtt s canFam2.chr10 38583586 452 - 72488556 AGCCTTTGAGCAGCTATTATACATTCCCAAGGAGAACAACCCCTTTCCCACCGCATAGCGTCCTAATGGAGGATCAAATATGATG-GTGGATTTCCTGACAACTGtggtcagtcagactgctgcat-cctcttgggcacaataattgatccagtggtgggcacatgacccatgaaagaacaatcaaagtcCTTTTATGAAATTTTGAAATATGGTGTCAAGAGGGTATCTCCCCCCCCCTTTTTTTTTTTAACACAGGTGGGCCTGGCAGAAGACTTCTTGTTTTCTCCA---------------TAAACACTGATGCaggaacaagcagagcagagagaagagaaagtgacggtacccttgtgacatcatttccagccctggatccagctgtgcctgaagccattacctctgggactctgagatgcaaggaccattgaattttcttcttctcttaaatacttggagtt a score=9833 s hg19.chrUn_gl000248 29745 218 + 39786 gggt------tttttcttatttcatttgaaggagtttattaattcaGCTGCCTTCCACCATCACCAAGC-TCTTTTCTAAAACAGCAACCACATCATTGTCAAACATTG-CATTAACACTAACTCTTTACAATGCAAGGCACTCTACAGAGCAATTTCTTGCACTTGAAAGCATTGAATTAGGATTCCCCTTGCTGAACTCTGAGCCCTCAAGCACACCATGCATT s canFam2.chr10 38584226 220 - 72488556 GAGTTGAATATTCTGCTACTTTCTATTGAAAGAGTTTATTAATTCTGCTGTCTTCCATCATCATCAAGCTTTTTTTCAAAAAGAAGAAGCACATCATCTTTAAATATTGCCAGTAGGACTCACACTTCATAGCACAAGGCACCTTACAAAGAACTTTCCTGCGCTTTAACGCACTGAATTATGACCC------CTGAACTCTGAGTCCTCAAGTAGACTATGCATC a score=10166 s hg19.chrUn_gl000248 31543 334 + 39786 tgggtgagtggaaggggatgag-ggtcctggagcaggagg-agagtctgtatcctgcag--tgacagctgccactcaactctg-ccgaccatcgccatgtggggatctgacgtagactgagtgttgtacatcttctacatctccttttttttttttttcaagaaaagtcagagatttagattgctatggggatttaccacactgata-----tgtgtgggtcaaataaacCACTCCATGCCTCCTGAATCCAGCTTCCCAAGTCACCCATTTGAAATGCCTGCTCTAGAGCCATTGAGT-TTGGTGCT-GAAAGGAGAGCTACAGATTTTCCAGTCCAGCTGCTCC s canFam2.chr10 38584446 328 - 72488556 TGAGTGAGCGTGGTGGGATCCTTGGGCACGGAGTGAGAGGCagagcccaggctctccaaactggcagctaccattcaactctggctcactgtcaccacatggggatctgattcagacccagtgttgtggatcttct--------------tttttttttaaaaaaagccagaaatctgaattgtgatgggaatttacca-atGAATAAACTCTCTGTGGGTCGA-TAAAACTCTCC-TGTGGCCTGAAACTAGCC-CCCAAGCTACCCACTGGAAATGTCTGCTGtaaaaccatgaaatgttagagcttggaaagatagttgcaggtaatatagtctaaatgctac a score=8623 s hg19.chrUn_gl000248 32195 238 + 39786 ATTTGATTTTGATGTTAtgaaatgccttatccagagtcacacaactaaatatcagcagagctggaagtggagcAAAGAGGAGTTGTTGCTTCTCAGACCA----------GAACTGACCATTGCAGTGCCATCACCTCTcccctcctatagctttctccatctcagaaaactggtgccagcactgccccaggtgcccaggc--------tgagtgttctccttggtacttatcaaacatgaatacccagtaggtct s canFam2.chr10 38584774 249 - 72488556 ataagactttgatattgtgaagtgactcacccagagtcacctaaataagtactggcagaaccagaactagagcaaaggga---ttctgattctcagaccatgctGTTACCAAACTGGGATTTTCC---TCACCATCCCTGGCCTCCTCTACCTTTCCCCAACTTGGGAA-CCGGTGCTAGCACCCCATCAGGTACCCAGGCCAGAATCCTGGGTGTTACCCTTGGTACAGGTCAGGGATGAAGACCTATTAAGTCT a score=91330 s hg19.chrUn_gl000248 32760 2255 + 39786 cccttttaaatataccttgccttcatcctgtttccctctctttccattgctgcccgctaagtctaagcccccattacctcttgccaggcccattgcaatagcttcctaactactctctggtcctgtcattcttCTGCTTAAAACTTTGGTTGGTTTCCAAAGAGTAGATAAGACCCTGCTCCACTCCCGCCTCCCTCTTGAGCTCACCTTGTATCACTCTCCCCCTTACTATAGTCTTTCAAGTCCTCGAACCTGCTGTTTTCCTCCTCGCTTCAAGGACTT-TGTCCATGCCTCCCAACCTGTCTGGCATTCTCTGTTCACATCTCTCCCTATTGTTAATTCCAAAGAATCCCTGTGGTCTCTGAATAGTGCTGGCCCATCCTAAGTGCCATGTAAGTGTAGGCTGTTGTGATTTTTACTGTTATCAtctcagcccaa-------------atgtcaccatcccaggtcaggtcatcctgtgattccccttcacagcaatcggcacagccatagttcagtcatcaactacccttatttgtttcccagacactgcttccttgagactccaggggacctccaggacaaagactgagtcagtcttgttcaattctgtatatccccagtggatgtcagactatatttgaaagcactcaatacgt------tgaatgCTGCTGAGTAAACGCTT----ACGTCTATATACATGTATCAACTCTAATGTCCAGTGGTACCTTCGACCCCACTTCCATGTTGGGcatgtt-cagatgaggaaactgaaggtcag-ggggtca-taagtgactCCATGCGTCTGTGGCTCATGAGAACATAAACTCCCAAT--CCTGAGGCCTTAGCGTGG--------TGCTCTGGCCTGTGCTTCTGGTTCTACTGGCTGGGTGAACAGTT-ACTTCTGCTACTTCTCGT-TCAAAATTGGTCAACATATATAT----------------------------TTTTCAGTGGCAGGAAGTCTTGCCCGAGGTGGGAATGTTACTGGGTTAATATCTGGGGGAAAGAGAAATATTTTTCCCTTTGTTAGCTGGCTCTGGGCAGCCTGAAAACTCTTGATCCTCTCTGTCTGCTGCTTGGGACATAATGACCTGCTTTCAATCCCTTTCAATTACAGGATTTCTGATAGGAATTTGGAAAACAA--CCTAAATCCCAAAGCTTGGATGGTAGCCCATGCTTCAT-TCCACGTCTCTGTACCCAGTTTTTCAAAGAGATTTTTTTTTTTCACCTGCTCCTCAGGCAGAGCCTTGTCCTCCACCACTCCCATTCCTCCCAAATTCCCTGCCTGGGGGCTGTCCAGCCA----CGCTTCTTGATTTTCTCGCTGGATGGAAGCCTCCTTTTGCCTCCCATGCTGGGCTGTGT-------TTTTCGGTGCTGGTGGTTGTCCTGAAGCAGTCCTCAGCGGGTAAAATACTTGGGCTGGTGTCTAGGGAGAGGCAGCCGTAGgcaggggcctgggggtgagcaaagccaggtttgaatgcttgctcttccttgtgttagcactggggccttgggcaaccgacctaagaccccaagcctcaatttctttaattgcaaaatgggaataatcatatgtatctttgggatttgtggtgGAAACACACAGCACATAATAGGCAATCTAAAAA-ATCATTTCTTTT------CTCATCTAACTTTTGGTACAACTAGGGGTAGTGGGGGTAGCAGGTACATTGAAGACTACAGTGATGGCTTAGGGAAGGGAGCATCTCTGCGGAGATTGGGCAGCTGAAAAGTCTAGTCTAGGGCAGAGACTACAGCAGTCTATGCCCTCGCTGCATGTCAGAATGAGTGGAAagtgaggagtggaaaatgaatgacttctggacattggagccagacagacctggtttgaatcccagttttgccacctaatggccgggtgactgtggaggattcaactgctctgagccttcgttgctgcatctgtaaaacagg------gactcccgtgtcacggggtaccatgagaattg-gagtaagataCAGGAAGCCATTTATTCTGCCCAGTGACCTTTACTCTGTGATCTTCTCCTGCTCTAAAGGAATGGGGATACTCTGGCCCTGAGTTTGCTCCAGGGCGTCT-CCTGGGGAGGCACAAATAGGAACTGGAATTCTTACCTGCTTTCTTTGTTTCCTAAATGACAAAAGTTACAGCAGCTTCTCTTTATTgggcaccgagtgttcttagtgttttttaatagtgaggagac--tagagcccagagaccgtggcttgtccaaggtcaccaagagggtcgaggagagagctg s canFam2.chr10 38585023 2201 - 72488556 ACCTCGAGAATACATCTTGCATATATCCTGTTTCTCTTCTTTTCCATCACTACCACCTAA--------------------------------CTGCAATAGCTTCATAACTACTCTCCAGTCTCACTGTTCCTCTGCCT----------------TCCAAGTTTTA--TAAGATCCTGCAAGAC-CCCACTTCCC----------ATCCTGTATCTCTCTCCTCC-------AGCCTTTCAGCCCCTTTAGCCTGCCATTTTCCTCCCCTCT--AAGGGCTTCTGTCCATGCCATTCCATGTGTCTGGAATTCTCTCTATGCATCTCTTCTTGGTATTAATCCCAACTAACCTTCCAGGTCTCTGAGCAGTGCTAGCCCATCCTAAGTACTATGTAAGTAACAGCTATTGTGATTTTCA---TTATCATCTCAGCCAAATGGCCCCTTTTTGAGGACTCCTTCCCAGGTCAGCCCATCCTGTGATTCACCTCTATAGCACTCAGCATAATCACAGTTCCGTAACAAACTGCTtttgcttgttttctatctattggctccatgagacttcagggtaccctcagctcaaagaatgtgtc----tcgttaacatctttatatccc-agtgactgtcagagagcatgatacagcactcaataaatatttACTCGCTGATACTGAGTAAATACTTGTTTATATTTGTACACCTCTAGACATCAGAACATCCAATGGAGCTTTCAATACCATTTCCATGTTGGccattttacagatgaggaaactgaggatcagtggggtcagtaagtggctccatg-gtctgtggcacatgggaacataaaacccccattccctaagtcctgagcttagcaggactctgctctg--ctctgcctctgGCTTGA-TGGCTCAATTGATATTTGACTTCTGCTGTGTCCCAAATCAGAATTGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTTTTTTTTTTTTCCAGTGGCAGGAAGTCTTGCCCTGGG--GAGATGCTATTTGGTTAGCATTTGGGG-AAAGAGAAGTATTTTTCCCTTTGTTAGCTAGCTCTGGGCAGTCTGAAAACTCTTGATCCCCACTGTCTGCTGCTTTGAATGTAATGACCTGCTTTCAATCCTGTTTAATTATGGGATTTCTGATAGGAATTTGGAAAACAACTCCTAAATCCTGAGGCTTGGATGGTAGCCCATGTTTTATCTCCAAGTCTCTGTACCCAGTTTTTCAGAAAGACTTTTTAT----ACCTGGCCCTCAGGCAGAGGCCTATCCCTTATTGCCCCCATTCCTCCCCAGTTCACCACCTGGGGACTGTCTAACCATGCTTGCTTCCCAATTTACTCACTGGATGGAA----------CCCTCCCATGCTGGGCTCTGGCTCTCAATTTTCAGTCCT-GTGTGTATCCTGAGGCAGTCCTTAA-GAGCAGAGTA--TGGGCTGGTGTCCCATGAAAAGTGGCCTCAGATAAgggcctgggagtgagcaaagccagctttgagtctttgctctt-atgatgttagtgctgggtccttgggcaactgacctaaggccccaagcctcaatttccttaactgtaaagtgggaatggtaatatct-catttagggttagtgGTAGAAAAACCTAGCAAATTATAGGCA--CTAAAAACATGATTTCTTTTTTGCCCCTTCTCTAGCTTTTGGTAGGGCTGGGGCTGGTGGAGATA-----------GAAGATCAGAAACATGGTTTAGGGAAGGGAGGGTCTCTGCTAAGATTGGGCAGCTGAAAGATCCAGTCTAGAGAAGTGGCAAAAGCA-------CCCTTTTTGGGTGTTGGGATGAAT-GCCAGTCAGACGTAGGA----AGTGGCCTCTgggcattaaagctacacagacctggttcaaatcc----------------tagctgggtgactg----ggtgacaactagcctgagtctcagttgacacatctgtaaaataggaacaatgatttccatgtcaaggggcatcacgaggactgcaactaaaataGAGGAAGCCATTCACCCTGCCCAGTGACTCTTGCTCTGGTGGCTTCTCCCAC-CCAAAGGCCTGGGGGCCACCTGGATCTGAGTTTGTTTCAGGGCATCTCCCTGGCAAGGCACAAA-AGGAATTGGGATCCATACCTGCATTCTCTGTTTCCTAAATAACAAACATTATGGCAGCTACCTTTTATTAAGTTTCAACTGTTCTTAGTTCTTTTTCTTACAGGGGAGACAATGCAAACTTGAGATTGCCACTTGCTCAAGGTCACTAAGCAGGTTCATGAGGGAGCTG a score=35670 s hg19.chrUn_gl000248 35714 840 + 39786 tttctccacaccaacctcctctctgACTCTCTTCTCACCACTGTGAGC---CTGGATTCCTGAGGCTCGGATGGACCTGAGCCAGCTGTTATGGCCTTATTTGGATGG-GGTCACTCTCAT-GGGAGCAGCAGTTTCATCCCCTTTCCCTGCGCTCAGGAGCTCCTTCCACATCTCAATGCCCCCAGTTTACTAACTGCACTGTCCCCAGCATGTCAGGCAGGCGATATCAGGAGGTGGTAGTGGTGGGAATTCTCCACCTTCCCTGCATCCCTCCACCAGGTGGGAGCTGTGGCAGGAAGAAAGGCTGATCAGGTGCTCCCAGGAAGACAGGGAGGAAGAAGCTAAAGATGATCAAGGAAGGATACCAGGGGACAGTTCTGATTCTAGGGCAGAGACA--AATTTACCTTCATTTCTTCTGCCCACATGGGAAGCGAGGGCTCATGAGCCTGCCCCCTGCAAATGGGAGAGAGAGGTCCATAAGCATCACACTCCAGAGGCAGAGGCTGGACTGGTAGGAAAGAGGAGGTGGCAGTGAATTTGAGCCCCACAGGATGGGGAGGCTGTGGGCTCAGGCTGCTGGGAAAGCCAAAAT-GTGATGAAGAGAGAGCTTGGGG-TGACACATTTGTGGAATAAGCCCCTCCTTTAAAGCTTGGTTTCTCAGTCCATGCTTGCCTCCCTTTTTTCTCTCCTACAGAACGTCACTCCTCTTCATTCCCCTCCCACTCCTGCAGTCTCACAGAAACTGACCAGTGG--CCTTGCTGGGCGCCCCGGTTCCTTCACCCATACCCTGGGCTCTGTGGAACATCAACACAGCTTGATTCAAAATCAGGAAGAAGACTACTG s canFam2.chr10 38587231 800 - 72488556 TTCCGCCATACAAACCTCCTGTCTGACCCCCTTTTCACTGCTCTGGGCTTCCTGGATTCCTGGGGCTCAGATGGGTTCAGGCCAGCTGTTATGACCTTTTTTGGATTCCAGCCACTCACAAAGGGAGCAGCAGTTTCA--CCATGTTCCTGCACTCAAGAGCCCCTTCCGCTTCCCAGTGTCCTAGATTCACTCTCTGCACTGTCCTCAGCATGTCAAGCAGGGATT------------TGGAGGGGAGGATTCTCTACCTGTCCTGCATCCCTCCGTTAGGTGGGAGCTCTGGCAAGCAGAGGAG--GATCAGGTACTCCCAGGAAAGCAGGGTGTGAGAAGTTAAAGATTATTAGAGAAGGGCACCAAGGTA-GGTTCTGATTTCAGAACAGAGGCCCCACTTTACCTTCATTTCTGCTGCCCATGTGGGA-----GGATTCATGTGGGGGCTCACTCTAAATGTTGTAATGTGTTCAA---------CATTATAGGACAAAAGGCTGGACTACCAGGAAAGAGGAGGTGGCATTGAATTTGAGCCCTATAGAATGGGGAAGAAGTGTGCTCACACTGCAGGGAAAGCCAAGATGGGGATGAAGTGGGAGCCTGAGGTTGATGCATTAGTGG-ATGAGCTCCTAGTTCACA-TTTGGTTTCTCAG-CCATGGCTG-TGCCCTCTCCTGTCTCCTCCAGAAC--------------TTCTGCTTCCCTTCCTGAAGTCTCACCGAATCTGACCAGGGGGTCCTTGCTGGGGGCTCCAGTCCCCAAACCCATATTCTAGACTC--TGGAACATGCACATGGCTTGATTCAAGATCAGGAAAAAAACTCTTG a score=29523 s hg19.chrUn_gl000248 37553 746 + 39786 CCTTCAGTTTAGAAACTGCTGCAAACAACCACTGCCTGGTCCTGAGGATCTGAGACTCAGAGCAGCCTGGGAGGTGGGGAAGCCCTGGGAAGCCACCTCTGCATCCCCATCAGCCTGCTGGAGCTCAGAGGATGGCCAGCCTTTGGTCCTCTACCCAGAAATGACCTTTGCTTTATTCTGC-ATCATTTCTGACTCCAGCACAGCGTGTTTATTAGCATGCATTCAGGCCCTGGGACGAGCAGACTAAGCCTCCGACGCAGGCCACCAACAcgctcactgtgggctccaaccaccctggaggccttgtcatttgtgaaagacccatgtgcttttctgtctccgctgcttctgctttgtctgcttgatctgaacctcaaaaaatgacagccattctttaaagttcagctcatgtgtcactcgctcttctgaagccttttctagcttcctcaggcataattagtcataattagttcctctctcccatcacttcccaaagccc--tgtctttgtagag--tctgccattatggcatttttcatattatattataCACACTTGATATTTAAATTACATTTCAAAATACAGGTGTACTACATGTTTTCGGCATAAAGTGAAGAACAGAAT----CCCTCTCCTCCTCAAATCTTTCCAGCACCATTTCCCAAAGCTAATCACAATTAGCAATATATTTGGAGGGCTCCCAGAAATTTCTATGTATAAATAAGCATACATAAGGACGGCTGGATGTGcagt s canFam2.chr10 38588031 716 - 72488556 CTTTCCTTTCAGAATCAGCTGTG--CAACC-CTCTCTGCGCCTGAGGGTGTCAGGGG-GGTGCAGCCAGGGGTGCAGGGGAGCCTTGGGAAACCACTTCTGCATGCCTGCCTTCCCGCCAGAGCTCAGAGAATGGCCAGCCTCCA--CTTCAACACAGAAGTGGCCCCTTCTTTCTGTTGCTTTCTTTTGAGACTTCTGCAGGGTTTGTCAATTAGCATGCATTCAGGCACCGGGAGGAGCAGACCCTTGCTCTGACCCA-------------CATGCAGTGTGCTCCCACCACCCTGGGAAATTCCTCATTTGTGGAAAA--CATGCATACTTCTGTCTCTGCAGCCTCTGATTTGTCTGCTTGATCTGTA-CTCAAAAACTGATGGTCATTCTTTAAGGCCCAGCTCACAGGTCATCTGCT-TTCTGAAGCCTTTTTCAGCACC-----------TTGGGCATAATTAGTTCCTCCCTCCTGTCACCTCCCAAAGCCCTTTGCCATGATGGCATTTCTGCCGTGATGGCATTTCTCATATTGCCTTCTACTTACTTGAT-TTTAAGTTACTTTTTAAAACACAGACCTAACACGTGTTTTCTGTATAAAGGGAAGAACAAAATTCTCCCCTACCCACTGCCCATTCTTCAAGGACAATTGCCCAAAGCTAATCCTTATTAGCAATTTCTTTGGAGGGCTTCCAGAAATTTT----TATAATCAAGTATATATGAGGATGTGGGTATGTACAGT