##maf version=1 a score=10253 s hg19.chr6_ssto_hap7 1760 629 + 4928567 ATTCAAATGTCCAGAATAGAGCAAGG--TGAATTAAAATCCTTGCTTGGTATATAAAACACTCATCAACAGAAGGCCAAGGCCTTAcgccccagcaagggattgaaccctgaatcctcaggctaaaagtctgatagctctaccgactgagctacccaggcTCACGACAGCAACCTTCCCTCATAGCTTAAGTACATAGCTTAAGTACAGAGAAATACA----GTTATCGTCAGCTTTGTCTTCCATTCCAAA---------CGAAAACAATCGCTTGCAGAACTACCTCACGTGCTCAAACCAAAAGCAGCCGGCAAATCCCATTTCTACACTCACCAACCTACTCCCACCACAACCA--TCTGGCTTTTTTCGAAAGCCACCAATACCAGCCGCTACTACACCTCAAACAAAAC-CTAGCTACGCGGGTACGCTCCCGAAGCGTTCAGCTCTGGAAACAGCC-CAACGACGCTCTCAAAAGCCGACAGTTGTTTGCGTAAAAAGGAATGGTATCTTACTAGGGGACGAAAGGTTTTGGCCTACTTCCTTTCAAACATACAAGACTGTAATATTTTTTCGTACCTAGAGGACTCAGAGAAAACGTGCAGAGCTTGGACACGTCCTACTTATTCATCCATCCAAATCCT s canFam2.chr35 28808745 573 + 29542582 ATCCAAACCCCTTGACCAGGGCAGGAAATACCCTTAACACTTTTCTGGATGTG-AGAATTCTCAGGGAAAAAAGCACAA--CTCCACCCCCTAATg-ggacttgaacattggaccctcggattaaaggtttga-ggatctaacaactgggctgcacaggcACAAGCATTGGGCTTGCTCTAACAGCCCT--------------GTAAAGGTAAGTGTGTCAGGCTATGGTTGACCTTGCTCTGCTTTCTTGGATAACATCTTGCAAGCCATCACTTGCACACACAACTCATACACTCAAA------GCAGCTTGCAGACCCCACTCCCACCCTCACTGACC-ACTCCCAGCACAACCAGGTCTGGCCTGG-------------AATA---------ATTGGGCTTCCCTCAAAACTCCAAGCACAGGG---TGCTTTCTGAAGGCTCAGGTTTGGAAAGGGCCTCCACAGTGCTCTCCAATCCCA----TGGTTTGGGTGAAAATGAATGAGTTCTTGT---GAGACAAAAGTTTTTGCCGCACTTCTCTTACAATGCACAAGACTTCAGTATTTCCTTGTACCTAGA----------------TGCAGAGC-TGGACGCGTCCTTCCTCCCCATTTATCCAGATCCT a score=4506 s hg19.chr6_ssto_hap7 3133 304 + 4928567 TTGAGGGAAAGGGGCAACTTGAAGAGGCAAGAAAATGCTTCATTCCTGGGGCTT------TGTGAATGGAAGTGCCCGCCAGGGAGTCGGTTGTGGAGCGGACCTTGGAGCAAGCTGACAGGTAGGAAGATGTGTGAAGCAGAAACAATGAATCCCAGGGTCCAAAATCGGTCTAAGGCCAAGTTTTATTTTGTTTTCTAGAAA----------------------TCTATATGAATGCATTTCCAGTCTTCCTGCTACCCTCACTTCAAAGGCCTTCTCCC-----------TAGACACGGGAAAATCCAGAGCTCCAGAAGCAAGTTCTCAGCAGAATTCC s canFam2.chr35 28810356 311 + 29542582 TTAGGGGAAAGTGGGAATTTGGAGACACAAGGCAACAGGAGCGTCTTGAGGTTCGTCGGGTAGGAATGGAAGCGCTTTCCCGAGGGCCCGCGACGACG-GGACCTTGGAGCGC-----------------------------AAACGACGCAGCCCACGGTCCGAAATCAGTCCCCAGCCAGCTGCTCGTTTGTTTTCCAGAAACACAGACCAACCTCCTTAACCCTCTGTTCCCATGGGTCCCCTATTCCCGTGGTACCCCACTTTCAACAGCACCATCCCGCCTTCCCTGGTCGCTGCGCGAGATCCC--GGTCCTGGGTGCAAGCTCGCGGCAGAACTCC a score=14166 s hg19.chr6_ssto_hap7 3441 432 + 4928567 TTTTCACTTTTTGTCCCCCGCTTTGATACATGAACTAGCATTCAAAAGGAAACAAAAATGGAACTGATTTTGGTACATTCCTCCAGTGTAGGACTATGCTTAGAAACAGAGGAGTTCTTCGTCTTATCATTTTTACTGGCCCCTTGTTTATACCGTCAGTGTTTATTTCAGGAAACTCAATAACTTAGGCATCTGTCTATGCTTAAACTGTTCCCCACCCCGCCACcacacacacacacacacacacacacatacacacacacacacacacacacacacacacacacacacTGCCCCTTT-GGCTGCATCTACCGCAGGGATCTTTGGTGTGCTGTTAACTCATGAATTCTACTTTCTGG----TTGTACAACTGTAAACACAAGC----AACTTGATTTTTCAGAAGGCAAGTGTAAGAGAAGAAATTTTAACCCATCGC s canFam2.chr35 28811673 404 + 29542582 TTTTTACACATTTTCTACATCTTTGTTACACAAATTAAC-CTCAAAAGGAAATGAAAATAGAACTCATTTTGATACATCTACTCGATGTAGAATCATGTTTAGAAACAAAG-------TAGTCATATAATTTTTACCGGCTTCTTGTTTATAGCA-CAGTGTTTGTTTTAGGAAAC-AAGAAACTCATACATCTATCTATTCTTACCCTCTCCTCC------------------------TATCCCCACAACcacacacacacacacacacacacacacacacacTCGTGCTGCCCCTTTGGGCTGCATCTTTCCCCAGGATCTTTGGCATGACATTAACTCACATAACCCACTTTATGACTTTTCTTAAAGTTCTAAAAACAAGTGTTAAAAATGA--TTACAGAAGACAACTG-AGGTGATGCAAACTTTATTTAACAC a score=32299 s hg19.chr6_ssto_hap7 4627 1510 + 4928567 tctacacccccTGACTCTCAAACTTCCTGGGTTCTTTTATAAAATGTTGTTGCTATTTTTCTTGTTGGTTTTGTTTTGTTATAGTTTTTTAAC-TTAAGAGTTAGGTAG-AGAAAGTCCACTGGATTAAATTTCATTATCTCTGAAATTACAAGACTGGATACTGTGTAGTGGCTTCATTAGACGAGTAAC-AGATTTTAGTCTGAATAGCACCGTTTTTGATTCTAGGACCTTCCCATTCCTGTTAACTTGCTCCAAGGTCCACTTGCCGGCG----ACTCGGTGAGAGTTTCTTGCCTCCACCAGGAAGGTCCTGAGACAGTCTCAAGTCTCCAACATATATAGCAGCGATAATGACTCAGAAAAAAGTGTTTTTC--AGTCCAGAGGCAGCCGCGGGCTTTCCTTGATCTTCACACCATGCTGGGTCGGAGGCTCTGCCAACATC-CATTTTCCAGCTCTTTTCGTGAGTCCCAGGTTCTGAGATTGTCCTGCTCTGATTCCACACCCCATCTCTATTT--CTCGCTTGACGATTATTATATCCACAAACGGGTTTTAAAACAGCGACTTCAAAACTCCATCAACTTTAAATGGAGTGACATA-----TTCCCTCCCACCCA-----------GACTTAGGGAATAAACA-GGGCAAGGTCAGACGCAGGGCAGCGGAGAGAATTTCCAACTGCCTTCCCTTTGAGAACCCACGGACACAAGGAGGAATTCTGCTATATATGTACATATTTGAAAGAAAAAGTCAAAGAGGCCCGGAAACCTTCAAGCAGTGCCACCGGGGGATTGGAAAATGC-GAGCAGGTCCTGGATATGGCAAAGCAAATAGAATTGAATTGTCTGGGAACGA------GCAGAGCCCTTTGTTCACGGGAA-----GCTTTCAGCTTAGCATATAAGGCGAAGGATGTACATATTCACGTCAAAGCCTTGGGCTGCTTCTTTATCCAAGAGCTGTTGTGTAACACTGACGAAAGTTATATCAAGCAAGTTTTCCTTTAAAG-CCTCAAAACACTGAAAAAAAAAGTGTTCACTGGCAAAGGCAAGGAACATTTAAGCCACCCAATTTTGATTCTCCTCGCCTTAGCCCTCTAGAAGATTTCCTTGAAA-AGTGAGTGCAGGAGGATGTTTGTGATCAGGCAACATGCTGCTGAAACACATCATTGATTTC--------AAACTCTGAGGAGGGATATgggagttttagacctttaatcgggggctctcccaactgagttatgtcagcTGCACCTCTACCTTCACT----GACACTAGTAATTATCTCAGCTATTGAGTTTCGAAAGCACTGCATTATTTGAGAGATGTCTTTCCCTTGATCCCTCACTCAGAAGTTGGGATCAATAACCTGCCACATTTGGTAATTGATTGAAACTACTGCCA--------------------------TCTGTGTGCATGGAAGAGCAGTGAGGGGAGAGAAAAATCAGTGGGTGAGTTT-TGGCTCCTCAGGCTTCACACAGGAACAAC------CACAAAAAGAGTTGTTAACAAAGATTGCTTAAGGGCCTCTTTTTCT----------TTTCCTT s canFam2.chr35 28812520 1476 + 29542582 TCTATATCTCCTGA---------------------TTTGTGAAATACT----CTATTTTCCC---------------------ATTTTCAAACTTTAAGAATTGGCCTGCAGAAAGTCTACTGGGTTAAGTTTCACTATGTTTGATATTACTAAACTGGACAGTATTCACAGTCTTCTCT----GGGTAACTAGATTGTAATCTGAATGGTGCCTTCTCTCGTCTGAAGGCCTCCCCA-CCTGGGTCACCTGCTCCAGGGGCTGCTCACCAGCAGAGTGTTGGCTGAGGGCTACTTGCCTCCACCAGGGAAGTTCCAAGG-------ACTTCTCCTGCAGCGCCCGCGGTGGTGAGGTTTGGGATGGACGCGCCCCCCCGGGGCCTG-GGCAGCTGTGG--------------CCGCA----GGTGAACCAGAGACT----GAACAGCGCACCTGTTGGCGCAGCTGGCACATACCTGGCACGGGTCCTGTCTGG--TTGGTTCCCCTCTCTTTCTTTCTTTCACTCTCTTGAC---CATTATGTCCACAAGGGGTTTTACAAACAACAGCTTCAAAACTATCTCCACTGTAAATTCAGTGATACCCACCTCCCCCGCCCCCCCACACACACACACAACTGGAGGAATGACCAGGGGCGAAGGCAGGCCTGGGGCAGCAGAGCAAAG----------------TTGGGGGACCAAGTGAGGC--GGGCAAAGCCTGCAATAGACAGGGATGTTGGAGAGATGAAGTCAAAGAGCCCTGGAAAGCTCCAAGTGGTGCCATCCATGGGCTGGAAAATTCAGGGGAAGTCCTGGACACCTCAAAGCAAGTAGGATTGGCTCACCTGTGAAAGACAGAGGAAAGGGCCATTTGCT--CTGAAATGCTTGCTTTCAGCTTAGCTAGTGTCACCAACAATCTACTGACTGATGCCAAAAACATAGGCT--CTCTTCATCCCAGAACC-TCTTGTAATATTGGCAAGTG-TATTTCAGGCAGACTTTCATTTAAAGACTTCACAATGTT--------ATGTGTCTACTAGTGAAGAGAAGGAAAATTGGAGGCTCCTGGTTCTGACTGTATT--CCAGAATCCTCTGGAAGATTTACCAGAGACAGTGAACACAGAAGAATATTTGCAATCAGGTGACACGCTGTGGGAAGAATTGGTTGACGTCTTTTATGGACTTTCCAAACCGGAATCTAGGACGTTTAGGCCTTTTATGTTCAGCTTTC----CTGACTTATGTCCACCACACCTCTATCTTCATTCATGAACACTAACAGTTTTCTCAACT-TGCTGCTCAGAAAGCACTGCATTCTTTGAGAACCGTTTTTCCCCTGCTCCCTCACCCTGGAGATG------ACACCCTGCCACAACTGGTGATTGATCTGGCCGACAGACAActccttccctccttccctcccttcctcTACGTGTGTATAAGGAAAATGAGAGGAGACAAAAATCAATGGGTAGGTTTGCTGTTCCTCAGCCTTCACACAGGTTCAACTGAGAATACAAAAGAAAAT-TTAACAAATATTCCATAATGGCCTGGTTTTTTTTATTTGCTCTTTCCTT a score=21555 s hg19.chr6_ssto_hap7 6137 616 + 4928567 GATCATTCTTTTTCATCGTTGTTCCTCAGGAAACTGTGTAATGGAACGAAAAGAATGAGAGCTTACTAATGTGATGGTGACACGATTGTTCCTCTCCTTTTGGGAGATCCTGAGTGAGGGGGATATTTCTC--TCTCAATTCTTCTTGT----CTTATGCTTATGCAACAGGGTTGTGTTATTTAAGTACAGCTTTGAAGAAGTAAGAGAAAAGCAGTATGA---------AGGAATAAACCTGGACTCACCTGCATGCTTAGCCGGTGCTCTGCCACCAAGCTATATACCCCAATTGACCCTACATTTCAGTAAATCCTCTAAAACTGATGATTGTCCCAATTTCTGGAT---------ATCCAGTGGTTGGTAGGACA--GTTTACTGTATTCAACCTCACTATTTCAGAAAATCCTAGACCAGTCCCTTTTTGCAGCTATGCCATGAAAAG--TAATGGAATGCTAGACCAAAAAACAGTTTTGTTTACTAAGATCTTCCTCCTCCAATTTTCTCACTCCAGTCAGGCCACTCCAAGGTCTGCTCACCAACATACTAC-AGAGCATCAGCTTCAACT---CATCGAGGAGAATCCCAAGTTGAGATATTTACTTC--TTTTCAATATTATTTTCTTTCAACTTCCAT s canFam2.chr35 28814113 610 + 29542582 GCTCTTTGTTTTTCCTC-CTGTTCCTTAGTGAGCTGTGAACCAGCAGGAA-------GGAACTTATTCATGTGGTGATAGCATGCTTATTCCTTTCCTTTCCAGAGATCCTAAGTGAGCATGATCTTTCTCTGTCTCTCTCCTTCTTCTCTTCCTTGTACTGATGCAACTTGAATGT---------GTACAATGTTGGAGGGGAAAGAGAAAGGCTGTATTGAAGGAACCCAGGAATAAACCCAGACTCTCCTACACATTGAGCCTCTGTTC--CCATGGAGCTGCGCACCTGGATAGACCCTACACTACAGTAAATCC-CTACAATGGACAATTGCCCTGATTTCTGGATTAGTATAGGATCAAACAGTTGGTAGAACAAGATTTACTGTATTTAACTTCACTATTTCACAAAATCCTAGCCTGAATCTTTTTTTAACCTTTGCCGTGAGAAGGATATCAGAATGCTAGATCAAAGAACATTAATG-CCACTAAGATCCCCC------------------CAGACTAGCCCACTCCTAGGTCTGCTCACCAAAGGACTACTGGAGCATCAGTTCCAATTCTGCACCAGGGAGAATCCCAGGTGGA-ATGTTTACTTCTGTCTCCAATTTTCTTTTCTTCTAACTTCTGT a score=21068 s hg19.chr6_ssto_hap7 7137 450 + 4928567 TAAAGAATATTAGCAATGTGTTACCTCAGGGGATTTAGATCCAGGTAAGTGGGAAAGATAGAAGTGAAATAAATTAATAATACTTGCTGAGAAATGAAGTATGACAAAATGAGAGACATGAGTGCCAATCTCAAAATATAGGCTAATGTTGGGTAGATAAGACAGAAGAGGAAAAAATTTATCTCAAAGCCTGGCTATAAATGAAGAGCAACAACAGTGTTT---CACAGTCACTGTTCTAGCAAACCCTGGCCTGGACCCAATTAATGGATGCTTCAGCTCTAGTTAAGGAGGCCCCATAGAAGGAAAGGGAAAGAGTAAAAGAAGGGAAAAGCTGCAATGTATTATAAAGCCTCATTTGGATAAAATTCTGTCCAGAATAAAGAAAGTGGAAAAGAAACAATATGTGATCTGGAACATTAAGTCTTTATAACGTCTTTGTAAAAAAACAAA s canFam2.chr35 28815199 435 + 29542582 TAGAGAATATTAGCAGTGTGTTATTTTGGGGGAATTAGGTCCCAATGAG-AGAAAAGATAAAAGTGGAACAAGGTAATAACA-TTGGTGAGAAATGAAGCATGA-----TGAGTGACATGAGTGCCGATCTCAAAATTTAGGCTTCTGTGGGGGAGATATGGCAGAAGAGGAATGAATTTATCACAAAACTTGGTCATAAATGAAGAACAGT----GTGTTTTTCTATTGTCACCACTCTAGTAATCCCTGGGGTAGACCCAGTTAGTGGAAGTTTCAGGTCTAGTTCAGGAGACCCCTTACAAAGAAGAGGGGAGGG-ATAAGGAAGGAAAAGCTACAGCTTATTACAGAGCCTCGTTTGGACAGAATTCTCCCCTAAATAAAGCA-----CAAAGAGGCAATATGTAAGCTGAGACACTACGT-TTTGTAAATCCTTTGCAAAAATCTAAG a score=6560 s hg19.chr6_ssto_hap7 7936 129 + 4928567 TTCCAGATCCTCGTGAAGCCTCTTTAGGCCTAGAGAAGTCCTCAAACTTTGCCACATAAGACACGAAGAGTAGTCCCTGTGAGTTTTGCCAATATTTTTGTGTGACTGTCAACCCTCACAGGAGCTTTG s canFam2.chr35 28815657 124 + 29542582 atCTAAGACCTTATAACATCTCCATAGGCCTAGAGAAGTCCTC-AACTTCATCACATACAACACAAAGAGTAGTCC---TGAGTTTGGCCAATA-TTTTGTGTGACAGTCAAGTCCCACAGGAACTTTG a score=16340 s hg19.chr6_ssto_hap7 8065 578 + 4928567 GAGAAAACCCTAGGGTACCTT---------------CTAG-----------------CAGAAGCAGCCAGTAAGGTACATGAttttaaagcttcccagatgattccagtaatcagtcagctttgagaaccaATAGCCTAGGAAGTCAAGCACCCAGAGCCTGTATTGAATTAATTTTTTAGGAAAATTTCATAGAAGAGGAGGTGAAGTGAACATATAGTAGACAGGATATATCCAAAGGTCTATATCTTTCTTGTTATCACTAGAGTACAAGTTCTTATCTATACAAGTTCCCCTTTCTTCTGGAAGAAAAAACACTAAAGACATTTGTCCCACAGGAAGATCTGACTTGTTTAGTCTAAAATTGTTATGGCTTTGACAATGCCTTGCTGCCCTTTTCTGTCACTGGACAAACACTATGAGCACTTTGGAGGGCATGCGTGTAGCTGATTTGAAGGTGCATGGTGCAGGAGCCACTGTTATTGGTGGCTTCCATAAGCACCACAGTGTGCAAA-------------GTGTGAGTGGTTACACTGCAATCAATGTTAATTATAGAAGTGGAATTTATGGCTGATTTTGGCTTTAGCATCTCAGGTATGTGTGTAAGCAAAATA s canFam2.chr35 28816019 564 + 29542582 GAGGAAGATCTAAGGCAACTTGGACAGTGAAGAGACCAAGAGGAGTTGTCTGTAGGCCAGAAGCAGTCAGTAATTTCTATGATTTTAAAGTCTCCCATGTGATTCTGTTAATCAGCTGG-TTTGGACACCACTAGCCTGGAAAGTCAAGCACCTAGAAATTGGATTGGATCAATTTATTAGGAAGATTTCATCCAAAAAGAGATGTAT--------TCGTAGAAGG------TTCA-----CTCTATCTTTCTTCCCATCTTCTGAATTCAAAAGAAAAAATGGACAAGGTCCCCTTCCTCCCAGAGAAAGAGA--------AGGTGCTTCCCACAGGGAGATCTGACTTGTAGAGTCCAACACTGTCATGGCTTTGACAATGCCTGGCTGCTC-TTTATGTTGCTGGATAAACAGTGTGA------------GCATGCCTGGA-CTGGTCTGGGGTCCCTCTGTGCAGGAGCCCCTGTTACAGGTAGCTCCCACAAAAAACACAAGAAGCCAGCTTTTCTGAAACCCTGTATGTGGTTATGTTGGGAGGAGTGCTGAATAC-----------------TTGATTCAGGCTTAAACATCTCAGGTATAAACGGGAGCAAAATC a score=3567 s hg19.chr6_ssto_hap7 8950 127 + 4928567 GTGTGGAAACTTGAAATGAAAGAGAAAATATGAGGCAAACAGGTTAGAGTATAATTTTTAAAATATTCACTTGACAAGATTTCAAGAAGCTCTTTAACTATGAAGGGGCATAGCCCATTTGGTGGAG s canFam2.chr35 28816584 102 + 29542582 GTGTGGAAACCCAGAAT-AAAGAGAAAGTATGAGA----------------------TTAAA--ATCCACTTGATTAGATTTCTATGATTTCTTTGCCTATGAAGTAGCAAAGATCAGCTGTTGGTG a score=8801 s hg19.chr6_ssto_hap7 9077 179 + 4928567 GTTTAGTCTTTTAAGGTGAGATTTCAGGATTTAAACCCTTGGTAAAGCTAATCTTTTATTTCACCTATGTATTTCTAACTTTTTGATAGAGGTAAATTGAAACCTGGATTTCTCTTAGGAAACTAAGTGTTTATAGTGAGCACATCCTTCCATACATCCTCCTGTTTGCTCAACTGGAT s canFam2.chr35 28816904 159 + 29542582 GTTTACTCTTTTAATGTGAGATTTCAGTGTTTAAACCCCTGTTAAAGCTAGTCTTTCTGTTCACCTACATATCTCTAATTCT----TAGAAGCTAATTGAAACCTGGCTTTCTC----------------TTACAGTGTGCGCCTCCTTCCATATAACTTCCTATTTTCTCAACTGGCT a score=39906 s hg19.chr6_ssto_hap7 9256 987 + 4928567 TCTAAAAGTCGAGAGTTTGAGGGAGCAAAACCAAGGTTGCAGTAAAATAAGAATTCCATGGTTTAAACAGATGCAACCCAGAAATTTTC-TGCTCTATTCTACCACTGTAGGC-AGAAGCCAACATTGAAGA--CTTACGAGAATTAAATGGGTTACCAGAAGAGTGACTATAGGCATGAAAGTGGAAAAACAGATTTAAGAGAATGAGGAAGAATGCAGACTGACGGGGGATTTAGAGTTA---TGGATTTAGTGAGTGAGGGATTTACTTAAGGAGACTTCCAAGTAGCTTGATTAGTCTTCTATCTAGCTAGTAAGTACAGAAAGATAAGCAGAATCTCTGCCAGGTTTTTTGTTGCTGTTAGGTTGATTACCTTTTGAATTAAAAGTAAGAAAC--AAAATCCCTCCCACTGTTATGTGGCATTAGGTTTTGTATTGGCATTAAGGAAAATTGAGCATGAAGAACCCATGAAGTTAA--------ATGGAAAAACACT--TAATTCCCAATCAGAAAACTGACAGCTCACAATGAAAATTGGAACAATACTCAAAAATCTTATTATCTTCTGATAAGAATGGGTAATTTTGAGCCCT-CATGCTACCCACTCTCCAGAGGACCTCTCCTTCATAGCCTCATGAAAATGCAAAACTCACGGTAAGAGATGTCATGTCTGCAGAGTTTCTGACTCAGAGATTAGGGTGCCTTCCAAAAACTCTGTATATTGTTACTTAGACATAATCCACTTTAAAATGAAAAGAAGTGGCATGG-TTTTGCCATGTGATATGCACGTAATTCACTGATAATGAT------------GGTGAAAATGTCTGACCCACGAGATGAAGTCTGCAATGAAGTTTGTGTAGATAAAAATGGAGAATGACAGCAAAGACAGAAAGGACAGAGGATCAGGAGAGAGTGGCATATTTTCTGCCTGTGAGCTTCTTTTT----------------------CCTCATTTCACAGTCTTTCTTTCTCTTCAGTACTATTGCTAAATGGTAGACCAGGTA s canFam2.chr35 28817219 970 + 29542582 TCCTAAAGTCAAGATTTTGAGGGAGCAAAACCAGAG-TGCAATAGAATAAGAAAACCATTGGTCAAATGTAGGCAACCCAGCAATTTTTGTACTCTATCCTCCCATAGTAGGCAAAAAGACAATTTTAGAGAGTCTTACAAGGTTTAGATAGGTAAACAAAAGAGTGAATTTAGGCATGAAAATGGAA----AGATTTGAGAGAACAAGAAAGAACATTGATTGACACAGGACTTGGAGCCATGTTGGATTTGGGGAGTAAGGGATTCATCTAAGAAGATCTCCAGGTAGCTTATCCAGACTTATATTGAGCTAATAAGTACAGAGGGATGAACAAGGTTTCTTTTAGG-TTTTTGTTGTTTTTAGGCTAATTTGCTTTTGTATCAGAAGTAAGAAACAGAAAGTTCCTGCCACCATTATGTGGTTTTAGGCTTCCTGTTAGCATTGAGAACACTTGGGCACGAATTAACGATGTAGCTTAATATGATTATGATAAAATACCTATAATTCCCAACCAGAAAATTAAGAGCTCACAATTAAAATTGGAACAACTGCCTAAAACCTCCTTATCTT---------ATGGATAATTTTGAGCCCTCCCCACTACCCACTCTTCAAGGGCCCTCCTCTTCATAGACTCATGAAAATGCAAGACTTA-------------------------------GAC---------------CCTTCTGAAATCTCTACAAAT--TTACTTAGATGTAACAGATTCT-AAATGAAAAGAAGTGTCGTGGCTCCTGCCA-GTAATGCTCACATAAGTTACTAATAATGATGACTGCACTTGGGGTGGAGATGTCTGATTCAGGAGGTAAAGTCTGCACTAAAGTTCATATAGACTAAAATAAAGAGTAATAGCAAGGACAGA----TCAGAAGTTCAGAAGGGAGCGGCATATTTCCTTAC-ATGGGCttcttttttttttttttttttttttttCTCTCTCATTT--CCATCTTCCTTTCTCTTCAGTAGTATTGCAAAATGGTAGCTCAAGTG a score=11197 s hg19.chr6_ssto_hap7 10575 356 + 4928567 AAAAAGCTGATTAATCTGTTGGCTACTTGGTGCTTTGCACTCATGCCTTTCTTGTGTTTTCCCAATAACTCTGT-GTAGTGGCAACCCATTACATTTTGT-TTTACTTTGCCAGGGAGCAGAAAATAATGAGGGGAAAAGGGGGAGTAAAGGAAGGTGCTGATTCCACATTGTCAGAACTATGGAAAAAGAAAGCAGCACAGGCGCTCCCAGGGATCAAATTTGAGACCT-TACACTTGGAAGAGAAAAGCTATACCATCAAGCCACAGCCCCATCACTGTTGCAATTTCTTGTTGCATATTCCCTAGTTTTACATTTTACATGGTTTTGTGAAAGTGTAACATTTAAAAGTAAATGTC s canFam2.chr35 28818189 338 + 29542582 AAAAAGCTGATTAATCTAGTGGCTACTTGTCGCTTTGTACTCACTTCTTTCTTATGTTGTCCCAATCACCATATGGGAGGGGCAATCCACTGAATCTTGTGTTTGTTTTGTCAGGGAGCAGAAAATAGCAAG-----AAGGGGGTGAAAGGAGAA-----AATTCCATATTACCAAAGTCGTGGGAAGACAGAATAGCCCTAGATCCACCAGGAACCAAACCCAGAACTTGCACACATGTAAGAAATACCACCTCCCACTGAACCACACCCCTGACACC-TTGAAATATAT--GTACATTTCACCT--------ATTTTCTATGAGTCTTTGAAAGCCTAACTTTTCAAAGTAAAAGCC a score=2411 s hg19.chr6_ssto_hap7 10931 96 + 4928567 TATTCTGTTAAAGTCCATT-----------------TCAAAAATCTT----TTCCTAGAACCTTTCT-CACACCTATGTTAAAGAAAGGATAATAAATTCTAAAGCATATGACACCAT s canFam2.chr35 28818668 117 + 29542582 TTTTTTTTTAAAGTCCACTGTGTTAAGCCCACTATATCTATAACCTCTATATCTATAAATCCTTTTTGTGCACTGACA-TAAAGAAAGGATAATACATTTTAGACTGCATGACACCAt a score=4444 s hg19.chr6_ssto_hap7 11309 92 + 4928567 CCTGCTC----AATCTTACCTGCCAAGTAAGTCCTCTCCCAGATCCTGTCACTGGTCTAAAGCTTCTTTTTATTTTTAATTTTGAGCCACCTACAC s canFam2.chr35 28819146 94 + 29542582 CCTGCTCCTAGAATCTTACCTGTCTGGCCAGTCCACTCTC-GACCCTCTCATTGGTCTAAAGCCTCTTTTTA-TATAATTTTTGAGCCACTTCCAC a score=2070 s hg19.chr6_ssto_hap7 12888 57 + 4928567 TTTCTGTATTTTCTGTTCCTGTTTTCAACCATTGCCTATGCTGACAAAGGCTTATGT s canFam2.chr35 28819884 57 + 29542582 TTCCAGTGCTTTCAATCTCTGTCTCCCTGCAACGCCTATGCTAAAAAATGTTTTTGT a score=10610 s hg19.chr6_ssto_hap7 18566 618 + 4928567 CTTAAAAAGAGCGAATTCCTTCCTCTTGCTTTCTTTGTGTTCGCCTCACCGTGAAAGGATTTTGCCTGAAAGAGGTGAAA-GTCGCCTGGAGCTGTTTTCT--------TTCTGGTCTTCGCTCTCTAGGGATCTCAGCCAGTGAGCAGCGTCT------TGGACAG-----------------AATGCCGCTT-------------CCACGCTTC----CGTAGACGCTGGGCCCAGCGGCTTGGGAGGGTTGTGACTGACACATGCTTTACACTTCATTTCACGCTGATATTGTGAATTAATTCCCCTCCAGTCTTATCTCCTCTCTTGGACCTCCGTTCCCTGAGTAGCTCTCCTAGTACTGGT--------------------------------------------------------------CTTAGTATTCCCTAGTAGT-----------------------------------------ACCGTTTATGTTTTTCTGGGAGCACTGCAGACAGAAAAGTAGGAAGTTGACTGTTTAAGATAATATTTCTACCTGGGATTCTCCTTGGTGGTGGACAAAAGCTGCCATTCGGGAAGTTCCCTAGGAA----CAGTCTTTGGAGGGTCCGCCATTATGAAAGACCCTAATAGCACTAAAGGGATCTTTCGGTCCAGAATGCAA----------CTTGAGGGTTTCAGAAATAGTAGAGTTGGATAGAGTAGACTTTGAC--CTCGGTTTAAAT---CGTAGAACACTAGCAGATAACAGTG s canFam2.chr35 719832 766 - 29542582 CTTATAAAGAAGGAATTTGTTTCTTTCACTTCCTT------CAACTCCCCTCGGAAACATGACCTCTAAAACAGGTGCTATGTCCATGGGAGGTGTTTCCTGGTGCACTTTCCTGTCTCCTGTCCTTGGGGCTCTCACTCTGTCTGCAGGGTCCCCATTCTGTGCAGGGCTCTCAGAACCAGGAAGCGCCACCCTGCAATAGGGACCCCACATCTCTAGGCAAAGGTGTTGGGTGCAGAGATTTAGGAAAGTAGTGACTGACACAGTCTTTGCTCTTCATTTCACACTAATATTGTGAAGCAGTTACAGCTCAGTCTTGTCTCCCCACCTAGACCTCAATTTCCCGAGCGCCTCTAACAACGCAGGTTTTTCTTttcttccctccctttctttcttccttccttccttccctcctttcttcctcccttccttccttttttcTAATAGTACTTGATGCCATGCAAGGCTGGGTCTTGCAAGCCCCACACCACCTTTGACATACTTCTGAGAGAGCTGCAGATAGAGGGGAAGAAAATAGAGGAACCAAGAGACTACTGCATCCTGAGACTCTCCTTGGTGGCGGGTAGGAATAGCCACTCAGGGAGTGGGCCACAACCAGTCAGTCCTCCAAGTGTTTGACACAGTG-----------------TTGAGAGCTTCTGCAGTTGGGAATGCAAGGTCTCTTCTCTGGAGGGTTTTCCAAACAGCAAATTTGCACGGAGCCCACCTCGACTGTTCAACTTGAATTCCCGCAGTGTCCTAGTGGTCACCAGTG a score=2168 s hg19.chr6_ssto_hap7 19442 53 + 4928567 GGATTAGGAAGAACCAAGGCCCTTGGAATTA-AAATGAATAGCAGTA----Atccact s canFam2.chr35 720801 58 - 29542582 GGAGTTGGAGGAGCCAAGGTCTTTGGAATTGCAAAGGATTATCATTAAATTATCCACT a score=8502 s hg19.chr6_ssto_hap7 22690 340 + 4928567 acaaaacaaatacagagtttttatatttcccacctagattcttcta----------atcttTTTATACTTTTTGTATACA--TAGTGGTTATCTTTTATCGGGCATTAATTATCAATTAGAATATGAAAGGATTAAGCAAAAATCATGTTCCTCAAGGAGAGGTGCCAGGTTCCTCAAGGAGAGGCGCCAGGACAAAGAAGGCCATAGTCAGGAATGCAGGGTACTCCCTCTACACAGGCTTTTTTTTTCCTCCCCAGTGATATTTTCATAGCTATTCATGTTTCATCTCCTCGTAAGAATGAGAGAAGCTGAAAAACACGTAAGCTGCCACCACCGTAGAAACCccgtcaa s canFam2.chr1 104248295 293 + 125616256 ATAAAATATATATCAAATTCTTATGTAGTCT-TCTAGTATCTGCtttttatttattatttttttttaattttttttttCGAGTACCAGTCAACTTTTATTGGATATTAATTGTGAATTAAGCAATGGAAGGATTCAG-----------------------GGATGCCAGGC--------------------------AAAAGTCATGGTCAGGAATGCCAAATG-TGCTTCCACACTGG--------GCCCTCTTCAGTGGTACTTGCGTAGCCGTTCATGTTTGAGCTCCTTGTAAGAACGACAGTAGTTGAAAAGCACATAAGCAGCCAGCACCATAGAAATCCCAGCAA a score=9790 s hg19.chr6_ssto_hap7 28976 229 + 4928567 TCTCTAGCCACTCTGAGCAATCACTGCTATGTTGGCTACAGTCTTA-TACTTCACAAAAATTTAGT---GGGAAAAATTAAAGTTCTGAGGGCAGAAAAATCACCTTAACTTGAAAAGG-ATCTCCTTAGACACTTAACCACACTTCCACCTCATCTTTCATGCACCTCAGACTAGCATCAGGAATTAATTCAAGAGGGTTCGTTCTTGGATTTGGGGGAAAGTTTAATATTAA s canFam2.chr35 28823855 230 + 29542582 TTTCTATCTATCCTGAGCAAGCATTGCTGCGTTCTCTAAAGTTTTAACACTGCACAAAAACCAAGTTGTGAGGAAAAGCAGATTTCTGAGAGCAGGAAACTCTC--TGACCTGAAAGGGCATCTCCTAAGGCAGTTAAAC-CATACCCACCTCATCTTTCATGCTCCCCAAACTAGCATCAGGAACCAAGTCAAGAGTGTTTTTTCT-GGATAAAAGGAAAAGTTTAAAAATAA a score=22381 s hg19.chr6_ssto_hap7 29531 807 + 4928567 AAGGCTGGAGCATTTTTAAAAAG-TCAGCCTGCTCGCGTACTTT-GGAAAAAGCAGC--ATCCTGTGGGATGAAGAAC----------CCAGTAATGAAA---AGCAAGACTTCGTTACACAATGTGTGgagcccaaagtcctgtgaaccgcactggtcacagacccatgaagctggccctgATGAGAGGT----------GT--AGAAGAGATCATCCCCAACAAAGAAACAAGCCGTTTTCTTGTTTCTTTACCTTCTCCTAAGAGATAGAAAAGTAGGTGTTCAACAATGCCAGTTTTGAACTGAGGAAGCAGGAGATGCTTATTCACCACAAAGACTTGCTACCCTGTCCTGCCCGGTTTGAATCCTGAAGTGAAAGAAGTG---AGAGTGCAGAAAAACTCCTTTGTCTTCTACCAGTGCTGAGCTCAGACTCTGGGTATTGTTGAG---AGAGCATCCCCTTTTGAAAAGGCTGCAAAAAAAGAAATGGAGTGGAAGTCCTAAGCATTTATGGAGACATCAGAGGAGGGCACAGACACATCACCACATGAACAGGTGTCACAGACACACCATCACATGAACAGGGGGCGCAGACACACCCTCTGCACTGAGTTAGGACAATCGCCTTATGTTTGTGGGATATTTCTACATTTTCCCTCCCAGTAGTCT-AAATTTGTAGTCC---TAATAATAACTTTGATGAATCAACATAAATTTGATCACACAATCCAGTTTATGACAGAAAATAGTTTTTGTGTTTCACTTAAACCAGGAGAAAATATTATAGAGGGAGACCTAAATGCATAAGGCAAGAGGTTTGAAGGAAAGATAAAGGCTATT s canFam2.chr35 28824085 723 + 29542582 AGGCCTAGAAAATCTGAAAAAAAATCAACCTACTTTAGTACTTTCAGGGAGGACAGTTTCTCCTCTGGAACGAAGAACACAGGCTTGCCCAGTAATGAGAGTCAGCACCAGTTGGCCACATAATTGGATGGGCCC-------------------TGGTCACCGACCCCTGCAGCTGGCCCTGATGACAGGTCAGGTGACAGGTTGAGGAGAGCCCATCCCAGATGAAGGAGCAGGT-GCCCTCT-GTTTCCTTGTCATCTCCGGAAAGATGAGA-----GATGTTCAAAGATGCCAGATGTGAGCTGAGAAGGCAGAAGATGCTTCTTTACTACGAAGGCCCGCAGCACTGCCCTGCCCTGTTGGGATTCCAATATTGAAAAAGTGGCCAGAGTGTGGGAAAACT--TACCCCTCCCACTGGTCCAGAACTCAGACTCTGG------TTTAGTCCAGAGCACCACCTCTTGGAAGGGCTGCAAGAGATG---TGCAGCAGGGGTTCTGGGCACTGAGGGAGGCATCAAAGAA-------------------------------------------------------------CACAGACACACCTTCTCCCCGGACTCAGGGCAAT----------------------TCTAC-CTCCCCCTGCAAGAAGTTTTAAATCCACAGTCCCCATAACAATAACTTTGATGAATCTATATGAATTTGATCATTCAACTGAGTTTATAAAGTAAGATAGTTTTTATGCCTGAACTAAACCAGGAGAAAATCTTGTACAGGGAGACCTGAGTGC--AAAGCAAGAGATCTGAGTGAAAGACAACAGCTATT a score=6264 s hg19.chr6_ssto_hap7 30714 145 + 4928567 ATTGGTCACAGAAAAGATGATTGGTCTGGTTTGTGTTAATTTAGTGCTTGTTGCAAATAATTCGCCACTTTTTAGAAGAAACCAAGTGGTCACATAAAGTCAGAGGCCACTGCAAATGTTTCAATAAAGGAGTTTAGGAAACCTA s canFam2.chr35 28824808 137 + 29542582 CTTGATCACAAAAGAGGTGATAGGTTTGGTCTGTGTTAATTCGGCATTTGTTGCAAATAATGTGCCATTTTC---AAGAAACCAA---ACTACATAAATCAAGAGG-CACTGTGAAGGTTTTACTTTAAGAGTTTAGG-AACCTG a score=7235 s hg19.chr6_ssto_hap7 31166 270 + 4928567 GCATCTCTCCTACCTCACAAATTTGGACAACTTTG---AGTCACAAAAAGTCACCAGCTGTTCTGTGAACTAAATTACACAAGCTCTAGAACACATGCTCCATCCAAAGTAAGTGGGAATTGTCTTTTCCATGCAAAAAGTGCCACACCAAGCCATTCCATGCCACCAGCTTT-ATGTAGCATCAAAATTACATTTTCCACAGAAAACACTCCTTCCACTTTCCCAGA------AAGACCA-------TCCA-CCCTAATGTCTGGTAATTCAGCCAAGCACATATTA s canFam2.chr35 28824945 255 + 29542582 GCATCTCTTCTGCCCCATAACTGTGGGTGCCCTTGGCAAGTCATGCAAAATCACCAAGTGTTCTGTAAATTAATTTACACCAACTCCAGGGGGCGTGCTCCACCCAAAGTAAA-------CATTCCTTCCTCG---------------CAAGTAATTCTGTGCCTCTAGGTTTCACACAGCATC---------TCATCCATGGAAGACACCCCTTCTACTCCTCCTGAGACCTGAGGCCCACTAGGTCTCCATCCCTCACACATGGTGATTCAGCCAA--ACATGTTC a score=8356 s hg19.chr6_ssto_hap7 31436 242 + 4928567 TAGGAGCATGTTCCTGAAATCTACAGCATAAATGAATTGTATTAAAGACTTCTCCCCTCTCTAGTAGAGAT------GTCAGTTGCTGCTTACAGGTCCTT-TTGGAGTGAATGCTGTTGTCATTCCCCTGAGACTCAAGCCTGCCAAATAAACCAGACT----CTCTCTCTTCTGTTCCTATCATCTCCCATTGTCATTTTCTTTTTTTTCACTGCA-GATTCAATCTCTGGAT----CTTCTCCACCCCAAGTGCT s canFam2.chr35 28825466 247 + 29542582 TAAGATCAGGTTCTTGAAATCTACAGTATAAATGACTTGTATGAAAGACTTTTTTCTTCTAACGGAGACGTCAATTGGTCAGTTGCCACTCACAACTTCTTCCTGGAG----------CGTTGTTCCTCAGAGCCTCACATCTTTCTAATATTCCATCCCTTGGCTCTCTCCCCTGTTCCTGTCATTTCTCA-TGTCATTTTCTCCACCTTCATGGCAGGAGTAATTCTCTGGCTCAGGCTTCTCCACCTCAGATTCT a score=8672 s hg19.chr6_ssto_hap7 34814 547 + 4928567 CCCCTGATTTTGGACATAACAGGTGGCATCCAAAGGCTTTGGAAACAAACTGAAACTG-------TACATCCTCCCAACATAAGACTACATAAAAATAGCAAAGATCAGGACAATAATTATAATATACTGCCCATTTTTTT------GTTTGCTTTAAAAAAAAATTCAAGCCATATCTTCCATTGGGATTTTCTGTGCAATGTCGTTTCAAGT----ATTCCAATTTATATAAAGAGTTAAGAACA-ACAAATTGAAGTTTAGAGAGGGAACGTATACTGTAGGCGTGGATTTTAATACAGTACTGGCCAGTGCTCTTGGGATTATAATTCAACTATAGGCATGC-GAAGAGTTAGAATGTCTTCAATTCTCCAAATTTGTAAAATGTCAACTATGAATTAATAATCTGTAATTATGAATGCCGATTATAGATACTACAATTACATGTACTGTGAATGTCGATTTAATATTGAAGaaggccagctacataatttacaggcccagtgtaaaatgaaaatacagggtcccttattcaaaa-agcaggggcaact-------------------------------------------------------gccatcaaaagtgc s canFam2.chr35 28837450 552 + 29542582 CCCACGACTTCAGACGTAACAG----CATCCCAAGACGTTGGAAACAAAGGGGAACTGGTTTGATCACAGCCACACAAGTCAAGACGGTATTCAGGAAGCAAAGAGCAATGAGGTGATATTAGCAAGCAACCCTGTTTTCTCAATGTGTCTTTTT-----ATAGATACAGACCACAAGTTCCCTTGCGATATCTCAGGGA--------TCAAGTCCCAATCTGATTTCATATA----GTCATGAACGGACTAATTGAAGTTCCGAGAGGGAACT----CTGTAGGCATGAATTTTAATAGGATACCCACAGGTGCTCTTGAGGTTATAATTCACCTATATGTGTGTGGGAGCCTGGGGGTGGC-------CTCGGAGATTGGTATATCTAATCCAAGAACT------------TTGTGAAAGC------------------------ATACTATGAATGGTGATGGACTGTTGAC-CAGCCGGGCTGCATAAGGTACAGGTCCAGTG-AAAATGAAAATGCAAGATCCTGTACTCAAAACAGGAGGAGAAGCCTGCAGTCCACCCCCGGCTTGGCCCTGCCCTTGCCTTCTCCACCTGCTGTATTCCAGCCATCACACCTGC a score=-583 s hg19.chr6_ssto_hap7 35361 48 + 4928567 taaaatacaaa------------------------------------------------------gcttttccctttcagtcgctcttttttc------ggcctgtca s canFam2.chr35 28838104 108 + 29542582 TGAAATAAAAATCTGAAGTATAATATGCGATCACTCTTGGGGTCACGTGTAAGCAGTGGTTTGTGGCTTTCTCCCCAACATCGATTCTTCCTCTTGACTGTCCTGTCA a score=9478 s hg19.chr6_ssto_hap7 35409 291 + 4928567 tggtatttttca-------------ttttc-------tgtctaatgtcactctaattaagaaaaaataaaataaaattgtgagtatcaaaatgaattttacagttcatctttatTTCACACATCAAAATtcacggggcatcgcgattgctttattatatatggagaagcaaaggaagtcagacacgaaa-----------ttcctttgcttatgtgccatgctcttttgctcccccgaatatcaattacgaaatataaattaagagatgcagttcatatgaaattttaagactgcaaaggcagaTCGCTGGTAGAGTCTCTG s canFam2.chr35 28838315 304 + 29542582 tggtctttctcaacctattatgtatttttcatttgcttatttaatatcattctaattaagtagaattaacatcgta----aattatcagcatgaattttattgttcacctttatTTCACACACCAAAATCcaaggagcattacgatcgctgtgtga-agaaagagatgcagggaaagccaaacatgcacattgtgctcatttcctttgttcacatactacgctccactatcccattgaacctcggttacaaaacataaattcaaaggtgtaattattatggagtttgaaggtggcaaA-------------TAGAATCTCCT a score=8005 s hg19.chr6_ssto_hap7 35798 318 + 4928567 AAAATTTTATTCAATTTCTCTTTCAATACTTCGATTGTTTCCAACTT-------------TTTAGCTTTCAGGTTTCTTAAGTACTTTTATTATACAATGTATTTACCCACTAAGAAAGACTTGGAACTTATTGACTCCTACATATGATGGCTGAATCCAATTCCCTGGCAGTGTGGAATGGATAGGTGGAGGAGGGAGATAGAAGAAAAGTAACAGGAATTAAAAAACAAACAAAAAACTTTCTGCTCTTCCACATCCTGTTGGTTGAGCCAGACACAGCAAAGaaaatttaaaaataaaaataaaaaataaaatGTGGTGGCGTTCTTT s canFam2.chr35 28838730 310 + 29542582 AAAGTTTCCCAGTATTTATTTTTCCAAATTTGGATTGTTCTCAACTTCTGTTTTAGGAGATTCAGATTAAAGGTTGCTG------TTTAATCATCCAGTACATTTTCTTACTCAGAAATTTGGGGAACCTATTGCCTCTCTCTTATATGGCTTGGATCCAATT-CCTGGCAGCAAGGGA-AGATAGGT-GAGAAGGAGGGCAGAAGAGAGGTAATTGGGCTC------CAACGGAAAGACTTTCCACTCTTCCTCATCTTGTGACTTAACCCAGACCTGTCTCAAAAAATT----AAGGAAACTAAAGAA-AAAATGT-GTGGGGTCCCTT a score=7157 s hg19.chr6_ssto_hap7 36696 461 + 4928567 CAGTCCAACCTGAAAAGGGTAGACAATTGCTGAAACATGTTTATATGAATATTGTTTTACTTGCACATAATTAACCTAGG-GTGAATAAGTTTCTTTCTTTTGAACTGATAGAGCTTTGTTTTCTTTT-GTTTTTCACATTGTGAGATT-TGTCACAGACAATTGTCACAATTGTTTTGACCTAATTAAAGTGTGGAGCACA------TTACTGCTAATTATTTTCAATATTCACCTTTTTATTAAGAGCTA----GAACAAGTCTTTATTGTGGATCGGAAGCTGATTGGGAAA-------CTAGGAGCTAGTTTTAATGTAAGAAACATCATACATTTTTTATTATTAAAAATGTAGAACTTAAATTTAGGAAAGACAATATCAAAAAGAACTGCCAAATACAATTG--TATTACATCAGGATACTA-GATGTGTAATGTAAAAAAAGTTTTTTTTTGCTGTAAAAATTATTAGTTGATCAG s canFam2.chr31 25655758 439 - 42263495 CAATTCATCCTGAAA-GCATATATGATTGTGGAAACATGTTCATATTAATGATATCTTACTTGCACATAATTGACCCAGATGAGGCTGAGCTTCT---TTTTGATTTGACAGCTCTTCCTGTACTGTTAGTTTGACAAATAGAGTGGTTCTTTCTCA---------CACAATGGTGTTGATCTAATTAACATATAGAGAATACCCAACCTAC--CTAATTATTTC---TAGTCACTTCTCTCTTAGAAAGTAAGTGGAAAAA------AAAAAAAACCCAAAACAAAATGAAAAATGCTTTTCCACAAGAGAGTGAAGGTTTAAAAGACATTCAAAGAGTTTTATAATT-------------CTCAGTTTGGGAAAGGCAATATCAAAAAGATTAATGAGAGGACTTTGGCCATTACATCAAGATATGAGGATAAGTTATAGGTAAA-------TTATTACAGTCTAGATTACT-GTTAATCAG a score=15330 s hg19.chr6_ssto_hap7 38137 262 + 4928567 ATTCTGGCACTCATCTGTGGCTTTTTATAAAACTTAGCTTGAGAAGAATGTCTTGCTAACGTGAGTGAAACAAGCAGACATTGAAAGGGGGACACAAATTACCCCACAAGGAGTTCTTCTTTATA-TTTTTTCCAGACGCAAATATCTTTTAAATTATGTTGATTAAGGTTAAAACTTTCTAGGCTTACATCAAAGCTGTGTGTGGGTCATGGC---ATCATTTCTAACTGTATGTA-------------------------GATATCGACTTGTAGCCCAGCGTaaaaaa s canFam2.chr9 51722602 291 + 64418924 ACCCGGGCAGTCATCTGGGGCCTTTTATAAACCCTTGTGTGAGAAGAATATATTGATAATGTCAGTGAAACAAGCAGACATTGAAACTGAGGCACAGATTACTCCAAAAGGAGTTTTTCTGTATATTTTTTTCTAGATGCAAATACCTTTTTAATTATGTTAATTAATGTTAAGACTTTCTAGGCTTATATGGAAGCTGTGTGTGGGTCCTGGTATGATCACTTCTAACTGGATAAAGTCTGCAGCACATTCCTGAGCGTACGATATAGACTTGTAGCCCAGCATGaaaaa a score=3013 s hg19.chr6_ssto_hap7 38413 282 + 4928567 aaaaaaaaaaaaaCCTAAATAGATAAATTTTCCA---TCAAGATCTCCTTGGCAGGAAGCACGAACCCTGCAATCTCATT-ACGGACCCATGCACTTTGAGTTCCGTTTGGCGGTATCGCTAAAGAGATAGACTAAAAAAGAATGGAAATAAGAAAAAATAGGCAGCT----------CAGAGAAAAT-TTTCCGTGCATCTCTG----CTTTAGGGGCATTAGGTCGTCCAAGGATGAGGAGCAGA-------------------------AAATCTTCCCACTGGTTGCCTTC----CGCCTC-----TCTCCTCGGGGCTTCTCCACCAGCC s canFam2.chr35 28843326 327 + 29542582 AGAAGAGAGAAAACGAAGACAGCTGCACTCGTCAGCCTCAACACCGCCT------GAAACACCGAGC-TGCAGTCCCATCCACAGACCCATTCACTTTAGGTCTCATGAGGCAGAATCCCTAAAGAAAGGGAAGaaacaaaacaaaacaaaacaaaacaacaacaGCAACAACAAAAACAGAGAAACCAGGTCTGTGAAGTTTCGTGAGCTTTAGAG-CACTGTGCGGTCCAAGGCGCAGGGGCCGGTCTCCTCTGCTCCCCAGCGCGCCCCAAGCGCGCTCCCTGCGCGCCTCCTGTGCGCCCCAGTGCTCACCCCGCAGGCCGCCCGCCAGCC a score=1745 s hg19.chr6_ssto_hap7 38745 119 + 4928567 GGTCCCAAGTTTTTCTGGGTGAGTTAGTGTG-TAAAGGTTGTCTAAATGTAAGGTGGCACTCAGCGCTTTGCCTCGCGAACGCTTAAAACATCATTTGGGTGACTGAAAACAGCCAGCTC s canFam2.chr35 28843708 117 + 29542582 GGGCCCAGCTTCCGCAGGGGTGGGGAGTGGGGTGCAGTCTGC--AGGCGTCAAGGGAGCCCAAGACCCGTGCCTAACGGACTTTTAAAGCCTAATCTGGGAG-CTGGAGACCGCCGGCTC a score=26078 s hg19.chr6_ssto_hap7 39225 869 + 4928567 GTTAGGTCTTGGGTTTTGGCAGCAGT--TATTTTTATTGCATATTAAATCGACTTTCACAGGAAATGTACACAAAATATGTAATAGAAGACACCGAATAACTCCCCCCATTCCTCAAACCAAAACATCTAGCTGCAGTAAAA---ATCTCAGAAGCATTGCCAAATAGCGTATTTAAATTATTTGCC----------------------------------------TTCTACATTTCCTCGATGAATTTCAGGGTTGTTTGTTCTTGAATCTTTAAATGAATTAATAATACTTCACATATCACTGTACCAAAGGCCCCAAAGGCAGGTGTGGCCAAAGGTGTGTGGATGAGGAATAGGACTAGATA---AAGTTGCTTGAATTTCTAGAAAGAAACACTTGTTAAAGAGTAAGTAAAAACTAT-------GGTATATCATTGTTCTGCACTTTCTTTTCCATACAAATCGTGTATTG----GTGAATGTATCAAAATCGATACCAGTTTTCTTTGTCAAAGCTTTTGCATGCTACCTTTTGTATTAAAAAAGGATGTTTTAAA-TGTGAAGTTGAAATTCCAAATATAGCGTCAAATTTCCTTTGTTTGAAAAAACTAAGAGCGTGCTCCTCCTAGTTCCTTAAGGAGCAGGAGAGGGAGCAAGGATGAATCACTAGCTCAGTTATCTCTGAGACCCAAACCCAGGACAGAGGTTTTAACCAGCTAAGTCACAGAGTCCCCTGGCAGGGCTATCCCCA------------TCAGGTATATTATGGTCATGCTGCTGTCTGAATTATTTCTGGGCAAAGAAAAAATGA-TAGACCTTCTTTCTCTTTGACCCTCATTTCATTGACTCCTGATTGGCCCGCAGAGTTGCCAAATCAGT---GAAAAACAGCTTGGACCACC---TTCCATTTTGCCAAGCATGGATTCT s canFam2.chr35 28843859 889 + 29542582 GATGGATCCTGGCATCTGGCCCCACTCTTACTGGTATTTCATATTACACTGACTTTCACGAGAGCTTTACACAAAACGTATACCGGAAGGCTCCCCCTAATTCCCACAGGCCCCTCAACCACAACACCTCGCTGGAGCTACATACATTTCAGACACACTGACAAACAACGGATTTGAAGTCCTCACCCTCaaaaaaaaaaaaaaaaaaaaaaaaTGAAGTCCTCACCTTCGACATTTCCTCGCTGAACATT-------TTTGTCCTTCAACCTTTAAATGCAGGAA-----CCCCTCGTGGCCCCACACCGAACGTCCCGGAGGAAGAAGTGGCCAAAGGTTTTTGGGTG-GGAATAAGGACAAATATATAAGCTGCTTGTATTAAAACAAATAG-CACCTATTACAGAATCAGTACAAACTATAGAATACGGAATATCAATGCTCTGCACTTTGTTTTCTGTGCAAGTCGCCTATCGTTGGGCGAATGCACCAGAATC-ATTCCA-TTTTCTTTG-CAAAACCTTTCCATGCTACCCTTTGTATCAGAAAAGAATGCTTTAAAATGTGAAGTCGAAATGTAAAAGATGAAGTCTAGATTGCCTCATTTGGAAAAAC---------ATTCCTTCCAACTGGTCTGAAATCATGAGAGGGAGCAGAGATGGGTCA-------------------------AACCCCACACAGCTGCCTTCCCCACCTGAGCCACGGAA-CCCCTGCCAGGGCTATCTCTGGGCCACCCTCATCCAGCTGTGTTGCTGTCACACTGCGGTCTAGATTATTTCTGGGCAAAGGCTAAGTGAATGAGCTTTCCTTCTCTTTGATTCTCATT-CTCTGACACCCT-CTGGGTTGCAGAGT-----AATCAGCCAGGAAAAACAGCTCCGACCACCATCTTCCATTTTGCCAATCACGGATTCT a score=15385 s hg19.chr6_ssto_hap7 40094 464 + 4928567 CAGG---GCATCT---------TTTACCTCTTGCTGTTTATAACCCTACAGTATTTGGTGTGGAGCCCT----------CAACACATCTCTCAGGCAGCTATCAAGAACGATGAAAGACAAAACATCCCCATGAAGCAGTAGAACTCTGGCCATTGTAATCCATGAGGGAATCCATATTTTGGAGACCCCTTTCCAGGAAAAGGGAATAGCTAAGACCCACGACCTCAAAGCTTCACACACAAACAAGCCTGGCCAACGTTAACACACTTGGCTTCAGGTTGGAACTCCA-GTGTGTTTCTCTTTCTCCAGGTAGTCTCCACCCTATCACAGATTTCCTACACCGTT--GCACCAGAGCCCCTGAATTTTCACTGCTTCTGGCTGTCTGCACAATTAGAAATACTAGGAGGAGGGTACAAAAGAGCAGAACTCAGAAAGTTGTCTGGGGAAATCTAGATTCAGATGGAAGAAGAAAACAGGTCCCAAAT s canFam2.chr35 28846171 469 + 29542582 CAAGCACGGATCTCAGGTAGGATTCTCCTCTTGCTCTTTAGGGCCCCAATGCATTTTGCATGGAGCCATGAAACTGCGTCAGAGAATCTTTCACATGAGAGTTAAAAGCCATGAGAGATAAA-------------GCAACGGAACTCTGGCCACAG-AACCCACGAGGGCCTCCACGTGTGGGATACCTTTTTCCAGGGGAAGGGAGTAGCCGACCTCTAGAACCTCAAGGCCCCAACCACAGACATGCATGGCCCACCTTAACTCAGGTGACTTCAAGTTGGAACTCCAGGCGTGTTGGTCCTTCTTTGGGAAATCT-GGTGCTATCACTGATTTCCCACATCATTACACACCCGGGTCTCTGCACCTCCAATGC-TCTGGCCATCATCCCAGCAGGAAATGCTGGAGGAAGGGCACAAGAGAACAGAACCTGAAACGTGGCCTCAGGAAA--TAGATCCAGATAGAAAAAGGAAACA--TCCCAAAT a score=78450 s hg19.chr6_ssto_hap7 40573 1045 + 4928567 CTTTTCCGCGCTACCCACAGAGGGGTCCATAGGGCGTTGTTTTGGATTCCCGTTGTGACTTGAAGGGAAACTTTCACAATGTTCGGAGCCCTTGATGTACTGCAGATGAATGAGGAGGATGTCCTTAAGTTCCTTGCCGCAAGAACCCACTCAGGTGGCACCAATCTTTACTTCCAAATGGAACAGTACATTTATAAAAGTAAAAGCGATGGCATCTACATCATAAATCTGAAAAGGACCTGAGAGAAGCTTCTGCTGGCAGCTCGTGCCATTGCTGCCATTGAAAACCTTGCTGATGTCAGTGTTATATCCTCCAGGAATACTGGCCAGAGGGCAGTGCTGAAATTTGCTGCTGCCACTGGAGCCACTCCAATTGCTGGCTGCTTCACTCCTGGAACCTTCACTAGCCAGATCCAGGCAGCCTTCCGAGAGCCACGGCTTCCTGTGGTTACTGACCCCAGGGTTGACCACCAGCCTTTAATGGAGGCATCTTATGTTAACCTACCTACCATTGCTCTGTGTAACACAGATTCTCCTCTGTGCTATGTGGATATTGCCATTCCATGCAACAACAAAGGAGCTCACTCAGTGGGTGTGATGTGGTGGATGTTGGTCCCAGAAGTTCGGCGCATAAGTTGCACCATTTCCCGTGAACACCCGTGGGAGGTCATGACTGATCCCTGCTTCTACAGAGATCCCGAAGAGATTGAAAAAGAAAAGCAAGCTGCTGCTGAAAAGGCTGTGACCAACGAGGAATTTCAGGGTGAATGGACTGCACCAGCTCCTCAGTTCACTGCTACCCAGCCTGAGGTTGCAGACAGGTCTGAAGGCCTGCAGGTGCCGTCTGTGCCTATCCAGCAGTTACCTACTGAAGACTGGAGCGCTCAGCCTGACACAGAAGACTGATCTGCAGCTCAAACTGCTCAGGCCACTGAATGGGTAGAAGCAACCACTGAATGGTCTTAAGCTATTCTTGCACAGGCTCTTAGACAACATGGAAATAACATTGACGGGAAATAAACATCAGTTTCaaaaaaaaaaaaaa s canFam2.chr20 8708214 1039 - 61280721 CCTTTCCGCGCTACCCAGGGAAGGGTCCATACGGCGTTGTTTTGCGTTCCCATCGTAACTTAAAGGGAAACTTTAACAATGTCCGGAGCCCTTGATGTTCTGCAAATGAAGGAGGAGGATGTCCTCAAATTCCTTGCAGCAGGAACCCACTTAGGTGGCACCAACCTTGACTTCCAAATGGAACAGTACATCTACAAAAGGAAAAGTGATGGTATCTACATCATAAATCTGAAGAGAACCTGGGAGAAGCTTCTGTTGGCAGCTCGTGCCATTGTTGCCATTGAAAACCCAGCTGATGTCAGTGTTATATCATCTAGGAATACTGGCCAGCGAGCTGTGCTGAAATTTGCTGCCGCTACTGGAGCCACTCCTATTGCTGGCCGCTTCACTCCTGGAACCTTCACTAACCAGATCCAGGCAGCCTTCCGAGAGCCAAGGCTTCTGGTGGTTACTGATCCCAGGGCTGACCACCAGCCTCTCACAGAGGCATCTTACGTTAACCTGCCTACCATTGCTCTGTGTAACACAGACTCTCCTCTGCGCTACGTGGACATTGCCATCCCTTGCAACAACAAGGGAGCTCACTCAGTGGGTCTGATGTGGTGGATGCTAGCCCGGGAAGTCCTGCGCATGCGTGGCACCATTTCCCGTGAGCACCCATGGGAAGTCATGCCTGATCTCTACTTCTACAGAGATCCTGAAGAGATTGAAAAGGAAGAACAGGCTGCTGCTGAAAAGGCTGTAACTAAGGAGGAATTTCAGGGTGAATGGACGGCTCCAGCTCCTGAGTTCACTGCTACTCAGCCTGAAGTTGCAGACTGGTCTGAAGGCGTGCAGGTGCCCTCTGTGCCTATTCAGCAGTTCCCTACTGAAGACTGGAGCGCTCAGCCAGCCACTGAAGATTGGTCTGCAGCTCCCACTGCTCAGGCCACTGAATGGGTAGGAACAACCACTGAGTGGTCTTAAGCTGCTCTTCCACAGAA---GGAACAGAATGGAAATAAGGTTGACGGAAAATAAG---CAGTTTCtaaaaaataaataa a score=2170 s hg19.chr6_ssto_hap7 41657 45 + 4928567 aacaaagaaagagtaagaaagaaaagaaaagaaagaaaaaagaaa s canFam2.chr4 87428966 43 - 91483860 aagaaagaaaga--aagaaagaaagaaagaaaaagaaaaaTTACA a score=8460 s hg19.chr6_ssto_hap7 41702 337 + 4928567 aaaaaaCC-TAAGTGTATGCTGTCACAGTCACTGCTCTAGCAAACTCTTCAGTGGATCATCATGATCAGGAAACTCAGCAGTGGCTTCGTCTCAGGGACGCTGCAGTTCCGTTCCTGAGACCTACAAAGAAACACATAGGAGGCA-----TTTAAGTTTAAG------------------GGACTTAAACTTCTGTTACAACCTCTT----TACTCTTACCCCGTGCTCCTGGAGAGATTCTGAAACCTCAACCATCACAATGGCACAAATAACAGACACTTTCCTCCTGTTGTTAAATTTTGGGGTGTCCAACTATGTCCACATAAATTTTAGGAGGTAATCCTAAACCATTGTGTCTTCT----------------CTT s canFam2.chr35 28846640 350 + 29542582 AGAAAACAGTAAGTATATGTTGTCACAGTCACTGC-----------------------ATCACAGTCAGGAAACCTGGCAGTGGTTTTGTCTGGAGGACTCTGCC-TTCTGTCTCTGAGACCCACAAAGTTGCACA-AGGAGGGGGTGGTTCTGGACACAAGCAAGCACTGCTCCCAGTAGCAGTTGTCCTCTTATAACAACCTcccaccccaccccaccccacGGCTTGTGGACCAAGAGTCAAACCTCAGCCATGACAAGGGCTCAAAGAATGGATGCTTCCATTCCGTTGGCAGAATTTGTGGTGACCAAATATGGT------AAGTTTGGGGAGTGATCCTAAGTTATTGTGTCTTCTCGTTCATTCGCTTTTCCTt a score=792 s hg19.chr6_ssto_hap7 42039 27 + 4928567 ACTTTTACCTTTCTCTCTAATATTTTT s canFam2.chr35 28847167 27 + 29542582 TCGTTCACTTTTCATCCCTATACTCTT a score=6841 s hg19.chr6_ssto_hap7 42066 583 + 4928567 CCTAT----------TTGTGCAAAATCTGTATCTTCCTGAATATGTGAATAAATTATGTATCAACTTCTTGGTTCCT-----TCCCAACTTTTGTCTCCTGTCCCCACCC-----CCGCTAGAATTAACGGAGTGAGGCTCAGTTGTGGCTGGAAAGTCACTGAGATGGGCGTTTAGAGGCAAGGCGCCATTTA----TAACATAGCCAA------------CCAGAAACAACCTCCAATAAAGAGTCAAAAGGTTTTAGACTGGAATGCAGTGTTT------CCTGAGCCTGAGGAACCGCCCTGAGAACTTCAATGGTATACCGGTTTGTAACTTACAGCTCCATAGTGGACCGATAATCACCGGATAGGGA------------GAAAGATGGGAATCTTCA------CAATTGAAAGGTCTCCC---TCAGACGATTATCATTCA-GGCTTGAGAACGCCAACCTAGAAAGTGGAGCTGCAGAAACTGTAGTGAGCTGAGCTGCTGGAGGACATTTAGGTAGGAGGAAGCCGTGGAACTGAAT-CAACGGGAATGGGAGAAA-GTGGAAGTGAAGGTGACAAGAGGTGGTGAAGAAAACGAGTCGGGAGATAGGTGGAGGCAGGTGGTTGCAGAAGAGGAAGGGAC s canFam2.chr35 28847375 618 + 29542582 CCTATACTCTTCTCCCTAAACGAAATCTGCACCTTCCTGAATATCTCGATAAGCTGCAGATCAGCTCC--GCTTCCTCGGTGTCCCGGC---CGCCTCCTGTCCTCCCCCTGGAATCACAGGGAACCACTGGGCGAGACTCAGCTGGTGCTGGGACGTGGCCGAAATGGGCGCCTGGAGAAGAAACAACAGTCAAAAGTAACTTGGTGAGTGCCTTCGTGGCCCCGAAGCGACCGTCTAAGACTAGAGAAAGGGCTTTGGATCCGAATGCAGCGGTTGCCCAACCGGGGCGTCAGGAGCTTTACCAACACGTGCAAT------CCCGGTTCCACCAGAGAGCTC---ACCGGGTGCACGATCACTGGCTGGGGAACCGGGAGCTGGGGGAGGGGGGAGGGGGCAGGCGTGGAACTTAGATGCCTCCCGGTTGAGTTGCTTGTCGTCCAGGGGGGGAGAACCGCTCCCTGGGGTGTGCAGCTGCGGTA--CGGAGGGAGCTGAGCTGTGGCACG--GTTGAGTGAGGAGGAGTCAGTGCATGTGGGTGCTGTGGAGAGGCAAGAAGTGTGCAGGAGAGGGCGCCTCGGCGCGTTGAGG----------GGGAGGT---TGGGGGGAGGAGCATGAGGAACCAGAAGGACC a score=9580 s hg19.chr6_ssto_hap7 43028 499 + 4928567 CCTCGGCTCCTCTTTGGCTGTAGGA-AACCAGGTCTTTC--CCTCCCAAGGGAGGTGAACTACAAGCTTCTGTTCCACAGGAAAACATAACCCTTTTTGTCCAAAACTGACACCGCTTTGAGAGCGACCAGCGGCTTTTTCCATCTCTGAAAAT-AATTTTCTCAACTGTGTATTTTGAAAGTCTCGGAGTTTCGCCAGAAGCGTCTTTCGTTCGGAAAAAATTCTAAACATTCCTTCTTTAGAGAAAGCTGAGATCACAGCGCTCCCATGACTAATGATTGGACCCACTTTTGCCGCCCAACCAAGATTC--------TATGAGTGGTGGAAATGTAGGGGAGAATGAGGA----AAGGTCTGTAGTCTGT-CAGATATGGGTGGAGTGGGGGTGGGGGGGGGAGGAGAGAAATCTAATGGATGTTTTCCAAGGGCGATTTTTTTTTCTTCTCTTTCTGTTTTTTATTCCCCCCCGATTTCTTAATAGTAATGAGAAACGGCAGCAAAGGAGAAC s canFam2.chr35 28848072 461 + 29542582 CTCCGGTTCCACCTGGAATGTAGGGTTCCCAAGTTTTTCTGCAACCCACGGAAGGTGAGTTTAAAGCTGC--------------------------TTGTCCCA---------CGTTTCAAGA-CAGCTTGTTGCTCCTTCCCCTTCTGGACATAAACTTTTTTGACAATGGATTTTGGAAGCTTCCGAGTTTCACCAGAAGCCTTTTTCCCTTGGACAG-----TAAACACTTTTTCAGATGAAAAAGCTGGGCTCGTGGTGC-CCCAGGATTAGTG-TTGGGCAGACCTAGGGTGCCC-ATGAAGATTACGGGGGAGTGCGGGGGGGGGGGGTGCAGGGGTGAATGGGGACCTGACGGCGGGAAGGATGTACTAACACAGGTTCAGCTGAGCAAAAGGGCTAGGTAG---CATCTAAAGGGATTTTCCCAAGGG-----TCTCCTTCCCCCACTTCTGTCTTTTTTCTCCCC---ACTTCTTAATAATAATGAAAATTAGCAGCAAAGCAGAAC a score=19820 s hg19.chr6_ssto_hap7 46824 961 + 4928567 GTAGCCAAAATGTGGTGCGACTGTTTAATCCAGATACGAATTTTGGAGAACATTGTAAACC------CAGCAGGGGCGTAAGGGAGAGTAGGGAGAAGTTTGTCCCTAATGTACAGGTTATGTTCTTACTATACTAGAAAGGCAAGTGGCTGGGAACTGAAATGAGCTGAGGAGTGGACGCAAGGGAAGGCTTTGAAAAGGAAGGAAGGGCTCTTGGAGCCGGGAGGGATAACACTGA-----GTGGAGGAGAGAAGAAGCAGCGGAGAAGAAGGCAGAAGAAAAATCGGGGACGCG-TCTTTAAAGACGGATAGTATTGA-------GACAAGCGTGGAGGAAGAAAGCAGCCAAGCGCCGCGTCTCTGC--CAAGCTTTCTCTAGGCCCTGGGGAAGAGAGAAGGCTCTAGGTGAGTGGTTTCAAAGTGTATATCCCACAGAAGGG---TACGGCTCGTGTTGCCCAAGATTTTGTGACTCTGAGAGTGCCTCACTGCACTGCACTCTCCATCGCAGGAAACAGGCTGAGCATTTTCGAGGGCGTGTGGTTGAGTATTCGTGGAGCAGTAGCCCCTGGTATTGGAGGTTTGAGGAAAGTAACGTT-----GTGTCAGTTCTCATGTGGAAGCAGCCTGCAGCTTTGATGCAGGCAGCAACTGTTTAGTTTGTGTTTCTTTTTGTTTG------TTTGTTTATTTTCGCGTGTTTGGGTTTAAAATACAAGAGAAAGAATGAGGAAGAAAGGTTAAGTAGTGACTGAAC--GTTTTGGGTTAGAGTAGATACCCACTAAAACCATCGTACTTCTGGCTAGCTCAGCTGGAAATGCATCAGGCCACTAGTCCGGAAATTTAGGAATCACGATCCTGTTCTGATGTAGATACTTTTCATTTTCCCATACTTCTTTTTGATTCATACTCAACAGGCTACTGAACCCAGCTTTCTCCTGGAGCAACCGGGAGGGTATTTGCGGTGCGTTTTGCTACTTATA s canFam2.chr35 28849250 923 + 29542582 GTGAGCGAAACCTGGTGCAACTGTT-AACCTAGATGCCGATTTTGGAGAAAATTCCAAGCCTTCAGGCAGAAAAGGGGTCGGGGAG---------------GTGCCT---GCACAAGTTCTGTTATTGCCACAC-AGGAAGGAGAGTG-CTGGGATCTGGAGGGAGCTCAGGAGGGTCTGCAGGGGAGGAGT-----GGAGTAGGGAGAGCACCAGGCTCCAGGCGGGACAAAGGTGAAGCCAGGGGAGGAGGGAAGAGGCAGTGAAGGCAGGGAGCGAAGAAGAGTAGTTGGCGGGGTCTCAGTGGACAGGTAGGATAGGTAGACAGGGCAGGAGCGAGGGTAGACAGTGACCAAGCTCTGCGTCACTGCTGCAGG---TGTCCAGACCTTTGGAGAAAGA---------AGGTAAGTGTTTTGAGAGGGGGCTCCTCACCGGAGCGGCTCTCGTCTTGTTTTGTCAAAGATTACCTGACTC----AGTGTCCTGTTGCA--GCATCCGGTGGCCCAA-----CGGTGGCgcatct---ggagcatctgg---agcatc--tggaACAGTAGACC-TGGTGCTGCATGTGCTGCTAGGGCAACGGTAGACCGTACCAGCCCT-----AGGAGCAGCGCTGAGCTTAGAAACACACTCCAA---TCCAGAGTGTGGG-CATTTCGCTGGCAGCAATGGATTTTTTTTAGCGTGTTTGAGTTTGAAATACAAGGGAAAGAATGAGGGGGGAAGGTTAAGCAGCGACTACACCTGCTTTATTTGAATTTGGATTCCCGCTGAAACCAT-GTACTTCTGGATGGCGGAATTGGAAGCGCATCAGGCTTTGAGTCTGAAGATGCA------CCAACGCGGTTCTGGTGTAGATTCTTTCACTTTTGCACAGGCTCTTTTAAACTCACA-TCCACAAAGGGCTGAATCCAACTTCCTTTGCGAGTAGCTCTGGGAATGTTTGCAGTGTACTTTACCATTCACA a score=8882 s hg19.chr6_ssto_hap7 50316 331 + 4928567 TGTTTACTGTTTTATTTAAGCTTGTGTTGAGAGTAATAAGGAAATC---GTAGAAATCAGAGAGAATGGCATAGGCCCTGTAAGTCACCATCATCTTTAATGCGGATGTTAACCAGTACAAGAACCCCGTTAGAGTTGCATTTGCTTTCTAGGGCAAGATCTTTGCTCTAAGTTTTTTTAAACAC-----ATGGCTGTCTATCtttaaaaaaacaaatcatttttatttt----atagagtataattgtcgaacagtcttagctttacag------aaaaatttagaagatatt----agagttcccatataccctgcacccaatacccctactattatgatagtccttacta s canFam2.chr35 28850173 324 + 29542582 TGATTATGATTTTGTTTAACCGTATGTTGAATGTGACAAGGAAATCTCCATAGATATCAG------TGGCATTGGCCCTGTAAGTCACCCTCGTGTTAATTGTGGGAGCCA-----------AGCTCTGTAAGAAATGCACTCAATCT-----GCAGCAGATTTGCTCTAACTCCTTTTAAACACTCTCTTCACCTGTATGTCT-----AAAACAGATCTTTTTTATCttgtaaatataatttaactttggaacagtacaagatttgcagggagaaaaaacctgagaggatattacagagatttctcatataccctgcccccagt--ttttcctattattatctaacttaaga a score=4678 s hg19.chr6_ssto_hap7 51666 438 + 4928567 CGCGGGTGCTAA----TTTGCACACATCAAGACTGAAGTGTAGTGAGGAAACGTTGAGTTTCTGTTTTCAAACCTTTAACTTCGTAATTAGAGA-----------TTTAACAACTTGAAGGGGGGCGGGGAGAGGCGGGGGAGGAGGTGGGCAGAAGGAATAAAACTCCATCTAAAATTCCTAATAGCAATTCCTTAGAATT-ATAAACTGCGAGATGATC----AGAAGTGACATCTTTGCCTTCTTTGAAGGCTCTCTTCTCTAAGTTACTAATAATGATAATGCACGTTCGGGTACAGAAATATGAGCCAAGAACTCAAGTCTGCAATGAAGGAGTGGACATGACAGCGTAAGAGGGAGCATCATTGTTTGATCTATTTTAACCTTTTCCGTCTCAAAGATACGATGGTGCTTCCTCCAGGA--AGAAAAGCCTGTAAGCTCAAACAAGAGCTCCCC s canFam2.chr35 28855834 383 + 29542582 CGCCAGTGTGAACATATCTCCAAACCTGGAAGCTAAGATGTAG------AAGGTT---TCTCTGCTTTCAAAGTTTTAACTTTGCAACTGGAGGAAAATTTAATTTTCAACATTCTaaaaaaaaaaaaaaaaa----------------aaaaaaaGGACTAAAACTCCATGCGGAATCCCTACTAGCAGTTAGGTGGAGCTGGTGCGCGGGGAGCTGGTCCTCAGGACGTGAC----------CCCTTGAAGGTCCCAGGCCGTGGAGGACCAA------------GCGCTCTGGTGCAGAAACCACAGCCCAGAGC-----CCTGCGCGGTGCGCGGGAGCAGG---GTGGGGGAGGGGACGCCAGGGCTCCGCAGGTTCCGACC---------------------TGGTGCCTCCTCTAGGAACAGAAGGGCCTGTAAGCTCCAGCAAG-GCTCCCC a score=7487 s hg19.chr6_ssto_hap7 52464 405 + 4928567 AAAAAAAAAACAACAACCAAGTTTGTAAAGTAAACCAATCACAGATTCCCTCAGTTTTCGCATCGTCTTGGCTTCATGGAAATGACGAGTTACTGGGAAGAAACTA------TTTCATTTTTCCAGTGCCCAGTCCTATCTCCTTTCCCCAGAGAGATGCATC--TCTCAGCCCTAAACTTT----------TCCTGGATCCCTTGTACACCATTTTCTCCAGGTTTCTCCAGTCAAAACTCAAGAATTGTTTTAGGCCATATTTTGGATGGTGTATCCTATGTACACTAATTTATTAAGTAATGACCCATGTTTGAGACCACGGAACGCT-AGTTCTGGGGCCGGACTAGATGAGTCTGGGTAGACAAAAGAAAGGTCTTCTGCTGTTCCCTATGAAACTGATTTAGTTAAGTC--CCTTTCTTT s canFam2.chr35 28856575 393 + 29542582 AAAGAGGAGAAACCCGCCAAGCCC-TGAAGTAGAGCACCTGTAGAC-CTCTCGGTTTGCTCATCCTCATGCTTTCCTGGAAGCAGCCAGTTACTTGGAAGAGACAAACACCCCTTTCTCTGTCCTGGGCCAGGACTGTTTTTCCT--CTGAGAGAAATGAGACCTTCTCAAGTCTCAACGTTGTTGGTGAGCCTCCGGATCCCCAGGG-----------CCGGCTGGGTGAGGGCAAAACCAGAGAACTCTCTTAGGTCACCTTCTGGATGGGCTGTTCTA-ACACAC-----------------AACCATTTCTGAGACCAGCAGAGGCTAAGTGCCAGGGCCTGGTCAGACGGGTCTGCTTGGACCAAGGAAATGCCTCCAGATATTTCCTGTGGAATCAACTTGGTTAAATTAACCCTTCTTt a score=2299 s hg19.chr6_ssto_hap7 65293 114 + 4928567 atagatctgaggttgggcctggaatttggcattcctCTTGTAGCACCCTGATCCCTCACCCCTTATTCTCCTGTGCAGTGTCCACTGTGACTAACATGCCA----CTATTTGCTTAAA s canFam2.chr35 28869088 109 + 29542582 ATTGCTCTGGGGTTGGACCTGGGTTTTGGAAGTGGAC----AGGACTCTAATTCCACACAACC-GTCCCCCACCTCAGTGTCCTTT----CTATCACCCCATACACTATTGGCTTAAA a score=11855 s hg19.chr6_ssto_hap7 65408 377 + 4928567 TGCCTGGAGAGAACCAGTGGATAGAAGGGAAAACAAGTATGAAACGAAAAGAAAATGTCTGCATTACCTTCCTTCAAACAAAAAAAAAAAATGTATCTTATAACGAACATATGGTTTGTCCCTGGGGCACACAACCAGTCTTCAGCTAAGCAGGTTTC----ACTAGACAATATCTCTCCTGTAGGCTGGTTATGGATA-TTTTCACTGAACAAAAGAATCGAGAAGTAAGGACAGCCTACCCTGACAGAGTGTTAGACTGGTGGACTGATGACAAACATCGTACTCTGTTGCCTCTCAAAGACACTTTTGATTCAACGGCAAACATATACACAGAGGACAGCAGTTTTGAAA-CATGCAGCATTGGAAACCCCTAAAAGGTG s canFam2.chr35 28869423 344 + 29542582 TGCCTAGAGAAAACAAGCAGATAACAG----AACATACATGAAATGACAA-----------CATTATCTCCCTCCAAA----------AAATGCATCCTATCACaaa-----gaattggcctcagggcacatggccagtcagcagccaagcagatttctgaagccaggcagtccccctcccgagtgcctgctGTAGATAATTTTCACTGGAGAAAGGAACCTGGAAATAAGGACGTCCCAGCCTGGTAGACAGTGAAAGTGACAAGCTGGAAACAAATTTCA--------TTCCTCTTAGAGACAC-TTTGATCCAACAGGAAATAAGGACATAGATAATAGCAGTTTTGAAACCACAAAGCACTGGAATTTCTTAAAAGATG a score=8329 s hg19.chr6_ssto_hap7 65788 223 + 4928567 TCAGTAGATAGGATTTCCTGGAGTTCCCTCGTCATACAAAGCAGATGTGATAGGATTGACAAAGAAAAAAGAATTTTTTTTTTTTAATTAGAAGTGCCAACACACCTGCAATTTACTCACCTTTACTTTGCATCTATTTTCCATTGTGGCAGAAAAGCTTTCTC-TACTTTTTCATATGGGG-CCTCTGTTTGCTGTTAACAGAGGTTTCCAGGCAATGTTTTAT s canFam2.chr35 28870350 213 + 29542582 TCCGTGGATCAGAATTCTAGGGCTTCCCTGGTCACACAAACCAGATGTCATAGGACAGAGGAAGT-----GGGTTTCCTGCACCTGCAGAGACAT-CCAACACACCTGTAATGT------CTTTGCTTTGCGTCTCTTTCCCATTGTGACAGAAAAACCTCTTCCTACCTCTTCGTGTGGGGGCCTTCATTTGATGGTAACTGAGATTTGCAGGCAGTGTTTTAT a score=11708 s hg19.chr6_ssto_hap7 66319 672 + 4928567 TCAGTGTTTTATTTTAACGAGGAGAATGGAGTGACTGATGCAATACAGGAAAATGAATCAATCGT-ATGGACTATCAGTAGGGAATGTGTTGATCCTTATTGATTTCGCTCCTTCCGTGTTGAAGACCTCTAATTCCCCGACAGTCTTCGTTCGGTTGTCCAGCGTCCTGCCACTCTCATCTCAAGCGGCTGGAGAGCCACATTTTCTCAGCTTTGGATCGCACTTGTGGCTGTGCTCTCTGCGCAGTTCGACAGGGAGAGAAATCAGTGGA---CAGATGCTTTGACTCTGGATTTGGCTCAGAAAACAAAAACAACGACCAAAACGAAATgcccggggggcgggggggcgcTTTTCTGCCTTTCTTCTTCTCAGCCTTTCCTTCTCTTTAATCATAGTACAAAA---------CCGAAGCCAAAGTGAGCCGCCTGTTGATGTGCACGCTTTTGTTTGCTTTCAAGAGACCCTGTTGC--GACCTCATTCTTCTTTCTCCTCTTCCTT----CTGCCGTCGCAATCGCCTTAGGTGATGTTGAGGCTTACATT--ATAGAGATGGGAGATAAGTGAAGGCAATCCATTGGGTTACGTTTTTACTCTCTATACGTGCAGAAATAGGATAGAAAAAG-GTGAGGAGGCAGAAGGCTATGTTGCTTGAGAATTACATTTAAGCACTGCCAGAGCA s canFam2.chr35 28870563 596 + 29542582 TGAAAGATTTGAAATGATAGTGAAAACAGGATGAGTGAAGTAATATAGGGAAATGGA-----CGTTATGGAATATCAATTGAGAATGGGTTGATAAGTATT----TCTTTCTTTCCCAGGTGGGGTCCACCACTC-----ACTGTCC-CACTGAGCTGTTGA------TGGCCCTCTCCATTCAGGT------------------------CCTTGGGTC--------------------------------CTGAAAGGGCAGCCAGTGAGGTTCTGCTGCTTTCATTTTGTCTTTGGCCCAGAAAACAAGAA----GAACTAAAGAAAATGC-----AGGTAAGGAGATGCTGTG-------TCATCTTCTTTGTCTTTCCCTCTCATCAGTAAAAGTATACGATGGGGACCACGGGGACCAAGGTGTGCCACTGGTTCCTGTGCAAGCCTCTGCTCGGCTTCAAGGGATGCTGTTGTAGGATTCTGTTCTCCCCCCTCCCTTTCCCTTCCTCTGCTGTCCCAGCCACCTTAGGTAATATGGAGGCTCACATCTCACAGAGAAGAGGAGGAATTCAAGACAATCT-----GTTATGTTTTTTCATTCCATATGTGCAGGAATAGAACAAAAAAAAAGTTAAGAGTGCTAAATCAGTATTTTTTGAAGACTGGCTTTGAATGATGTTAGGTCA a score=6885 s hg19.chr6_ssto_hap7 67075 244 + 4928567 TCCTGAAAGACTGTTTTG-TAATAATTTTCAGGAGGTAACTTTCATTTTCTGAGAC--TGGCTCCGTGAGCATGCTGGTAGTAGTGGTTAGTATCATGGAGCGCCTTCAGCTGCTCTGAGTAGAAGATACTCGGTACTAATGAGGGGATACAGATTCTTTAGTATACTGTACAGGACTTGAAATGGAAAGCAAAGTATTAGAAAAGTGTCAGATAACCGCCAAAAGAAGTTTCCAATGTGGCTTTAA s canFam2.chr35 28871259 236 + 29542582 TTCTGGAAGAGTCCTTTGCTACCACTTATGTAGAGATAAGGTTTGTTTTCTGAGGCCCTGGATCCCTGAGCATCATGGTAGT-----TCAGTGTTAAGGGATATAAGCAGCTGCTCTGGGCAGAACACCTTCAGGAACTTGAGAGGGCTACTGATTTTTCAGA-----GTGTAGAGCTTCAAATGGAAGGCAAAAGATTGGACATATGTCAGATAATAACCCAAGGA-GTTTCCACTGTGACTTTCt a score=7955 s hg19.chr6_ssto_hap7 67319 246 + 4928567 AACGTTGAGTTGTCAGGATCTCCTTCTTCTGTTATGCTTGGCAAGGAATCAA----ATTCTGGTTTTTCATTCTTTCGATTTCTTTCAGAGATG------------ACGCAAAGTTATTGAAATTCAGCTTTTTCTTACCTAAAATGCTTC---ATATTTGTTGTTTACTCAGCCGGAATATTAAAGGTTAGATTTGATTGAGGAAAATCACAGTCAGAAGAAAACCTGAGAGCGATGCACTCAGCATTTCATCTTAAGGGTCTt s canFam2.chr35 28871693 239 + 29542582 AAAAT---GTGGTTCTGGTTTCCTTCTCCCATT----CTGGGAAAGAGTCAATCTAGTCCCGGTTTTCAGCTCTT--GATTTTCTGCAGATACGTCTTAACTTGAGACACAAGACCGTTGAAATTCAGCTTTTTCCTACCTAGAATGTTTCATAATATTTGTAGTTTGCTCCATCGGAGTATTAAGGACCAGACTTGATGGAGAAAAGCCAT-----------------GGAGCGATGCACTCAGAGTTTCACTTGAAGGGTTTC a score=3452 s hg19.chr6_ssto_hap7 67739 75 + 4928567 TTTATAAGGTGTGAGTGAAACAACACCTCTAGGGATGACGAGAAGAGTTGAATTATGAGGGTGAGATAAAAAATA s canFam2.chr35 28871980 71 + 29542582 TTCATAAGGCATGAAT----TAACAGCTTCAGGGATGGACAGAAGTGTTGAATTGTGAGAGTAAGACCAaagata a score=3264 s hg19.chr6_ssto_hap7 88485 55 + 4928567 aacctaagatatcttgccctgccagaatgtaagtgctcagaaatgacgggggtga s canFam2.chr35 28872051 55 + 29542582 aacctaaggtatctttctgtgctagaatgtagatgcttaaaaatgatggggacag a score=7412 s hg19.chr6_ssto_hap7 88557 135 + 4928567 gccagcttgaagggaatctcactggccaaatctgacacacttttagcatcagtgatgacaataactgattatcattcttgggaacttaaacaaataaatatggaggacgggacgattttccttacagtggtttgc s canFam2.chr35 28872308 132 + 29542582 gccaacttgaagggcctctcactcgtcaaattggacatactctgagcatgaataatgacaag---tgattataatccttggatacttaaataaataaatatggaagaagggaaaattttccttatggtggcgtgt a score=17780 s hg19.chr6_ssto_hap7 89019 510 + 4928567 gtgaggataaaatttaaaaatccccatttaaacaataccatcagaatgatgatagatgcaggcaaaatttgtaagttaatgttaaag-tataggtaaaaatttgatgaggatcaggatatttacgtagtctcagagtatttccctgtagattatttattaattacaatgaggaaaatgataatttttcagggaagaaac---agtaattacaaacttaaaatcaagtgatcaa-gctaacttca------------------gtcagctcatgcctcttggtgtgagagagggtaataacgtgatttctgtgacatttctcccaaat-tccataacccga-tgtaatcttatcatggctaatacagattaagaaacgttgcacaaaaccactggaaaa-actcttcaaaaacatgtcggtgttgtgaaagacaagaagattaagaaactgttccaaattaaagggcactaaagagtcaagacaactagattcatatgtgattctgaaatggatcctagcttggaagagaaatttct s canFam2.chr35 28872453 497 + 29542582 gtaataataaggttagaaactcaccacct---tgctgccatcagaacaagaatagattcatgtaaaattcataaatcaatgctaaaaacataggtaaatttttgatggggatcaggat-tatatatagtctcagagtatttccttatagtttacttactaattagag---gggaaatgataa------ggggaagaaaccctggtgaacacaaccttaa--ccaagtgattaaagcaaacatcactaataatgggaaaaactgacatcgcatgcctcctggtgtgttggagggaaatacc---agttctgtgatactcatcccaaatattcacaatctgagtctggtctaatcac----aacataaattgaaaaacattttacaaaatcattggcatatgatgttcagaaacatg-----------aaaaacaagaagcttgagaatctattccagattttaaaagactaaagaat------aactaaattcataagtgatgctgaaattgaccctagTTGGGGACAGAAATTTCT a score=17130 s hg19.chr6_ssto_hap7 89544 760 + 4928567 ggtacaattagacaattttta-atagactttatattagactatattcaca-------------------tttatcaatgtcaaatttactgaacttgataattgtgttgtgttaaggaattgacctttttcttaagaaatacacattgaagtatttaa---------------------------------------gaataaaaagatatgatgtctgaaaatcattatcaaatagtttagagaaataaTCTTTGTCT-----------GATATATATATATAATACATACTACATATATATGATATGTATTCCAGTATTGTTGATTTGTCATTGAGGAAAAGA-------TGTTTTGAAATTATCCCAAGATTTGAACAATATATGCTTCTCAGATGGT-CCCACTTTATTTTAAATGTTGCAAGGCAGAGACAAAGGTACAAATTTCTCAATTT---GTATTAGAATTTAGAAGGTGTTTTATTCTATTTTCCTTGTCACACTCCTTGCTTGTGAGTCAATCAACTAAGGACATCTGAAAGAGACAGAGTTTCTTTCTCAGAGTCAGGAGGTAATGAGGGGCTGCTCTGGTAGGGAAAGAAATAGTGAAGTTCTTTTTTGGagaaaagcagcaaaaaaaaaagagagtgacaggagaaaaagaaagaaagaatggaaggaagggaaggaggaaaagaaacagtaaagTTGACAAACAGAACTCCCTTCCCTCTTTATTAGTCTTCA-----GGAAATATAGAGTT------TGAAACTATCATAGCCCAGGAAACCCTTTAAATAGGGCCATCAGTAGGCCAGAAATTTTGATTAGTGCCTTGAAAATA s canFam2.chr35 28873284 708 + 29542582 AGTAAAATTAGTTTAAATTAATATAGACTGTATATTAGATAGTAATAGTACTATTACTATtagtactattttgccagtgttaaatctcctgaattcaaagtttgtgctgtggtaaggaactgctcttgctcttaagaaatatatgctgacatatataACAAAAGGATTATGATGGAAGTTTACAATAAAAAGATTGTGGATAAAAAGACATACTGTCCAAAAATGGTTTTCAAATCGTTTAGAAAAATAATAAT-GTCTCtaggtagaaaggtagatagata-gatagatgatagatagata-gatagat---------TTGTTG----GTTATGGAGGGAGAGGCACACAGTGTTCTGAAATGATCCCAACCTCTGGACAGTTTGTGCTTCTCAGGTGGTTCCCATCCTATTTAAAATATTGCTAAGCAGAAGCTAGAATGCAAATTTGCCAATTTATGATATTAAAATTTAGCAGATGTTTTCTTC---TTTCCCTTTCACACTCCTTTCAC------------ACTAAGGACATCTGAAAGAGATTGAATTTCTTTCTC--AGCTGGGAAGCAAAGAGGGGCTGTTCTGGTTGGGAAAGAAAGAGTGAA---------------------------------------TATAGGAGACAA--------------------------------------------------------------CACTCTTCCCTTTATTTGGGGACAATGATGGGCACAGATAGTTTTGGACTGAAACAATATCAGCTC----------TTTAGTGAGGCCTTCAATGGACTAGAAATTTTGAGAAGTCCCTGGAAAATG a score=6550 s hg19.chr6_ssto_hap7 90621 253 + 4928567 AAAAGCAGAAGTGATTAGACGGACAGGAAACAGCAGAGGAAATGGCTGCTGTTTC----ACTACAGTTAAAATGTCTTACACATCTGTGAACTATTTGTCCTCTTCTCAGAGGAGGGACA-----CTTTTTTAGGTACTAAAAAAGAATT-GTCTGGCACTTCATGGCAGCAACATGTTTGATGTTAACTGACATTTCCAGACATCCAGGTATGATTTTTATTTAGCGACTTTAAAAGAAGGATGAGAAAAAAAACAAAAAAA s canFam2.chr35 28873992 247 + 29542582 CAGAACAAAAGT------ATGGACAAGAATTGGTAGAGGAAATGACTGTTCTTTCATTTACTGCGGTGAAAATGTTTTGGACATCTATGAACTATTTGTCTTCTTGTTTGGCAGCTAATAATTTCCATTTTGACACATTCCAAAAGTTTTCTTCTGCTTTTTCTTCATAGCTGCATGTTTGATGTTAACTGCTATTTCCCAGTAT---------ACTGTTATGTAGAGA-TAGAAAAGAAGAGAGTGATAAAATGAAAGGAAA a score=26328 s hg19.chr6_ssto_hap7 92170 467 + 4928567 TTTTGTGAATTTGTTCTTATTGGGGAAGACGGCACAGGGTGGGAAATGTCGCCTTGGGCTATG---GTATGCCCCACCTCCCAGAGAATGTCCATTTGCATTCTAATCTTCCTGGGATGCTTTATGGAACTTTTTCTTCTTCTTGGAGCTGC------TCTTGCCAGCCGCCTCTTCAGGCCCACTGCTGACCAGCTCCTCTTTGGA---GAATTTCCTCGTTTTCTTGGAGCCACTTCTGTGGCCTGACTCTTCGGTGTCATTAACTGTTTCCTCCTTGGGTGAAGACTTCTTCCTCTTGGGAAGACTGGTGCTGCCAGCGGTCTCTTCAAGATCGCTACTCATCAACTCCTCCTTGGAAAAAGATTTCTTTTTCTTGGGTTTGGAGAAAGAGATAGATGGGTCTTCCATTCCATTCTCCTGATGAACCTCCTGGGGCTTTTGCTTTTTCTTCTTTTTGGGTTTTTCAATC---GTCTCCT s canFam2.chr24 21558412 460 + 50763139 TCCTGTGAATTTGTTTTTATTGGGATATA------AGGGTGGG--------TTTGGAATCATGTGGGTTTGCCCCACCTG--GTAAAATGTCCATT------CTAATCTTCCTGGGATAGCTTCTGGAGCTTTTTCTTTTTCTTGGAGCTGCCGCTCTTGTTGCCAGCAGCCTCTTCAGGTCCACTGCTAAGTGGCTCCTCCTTAGAAGAGAATTTCCTCTTTTTCTTGGGGACGCTCCTGTTTACTGCCTCTTCAGCATCGCTAACTGGTTCCTCTTTGGGAAAAGATTTCTTCCTCTTGGGAAGACTTACATTGCCAGCTGTCTCTTCAACATCACTACTAACCAGCTCCTCCTTGGAAAAAGATCTCTTTTTCTTGGGTTTGGAGATGGAGACAGATGGGTCTTCCATTCCATTCTCCTGTGGAGTCTCCTGGGGCTTTTGCTTTTTCTTCTTTTTGGGTCTTTCACTTTGGGTCTCCT a score=10010 s hg19.chr6_ssto_hap7 95188 538 + 4928567 TTCTGTTTTGGTATTTGAGTGTGTGT----GTGTGTGTTTAGCTTCTTGAGCTTGGAATAT--GTCATGAAATACAAGAAAGATCAGGGAGTCTCAGTATATTTTAAACTTAAATTGGTTTTCAGAAGTACTTATACCTTGTTCCTAAGGAATTCAGGGTGTCCAGATTTCAACCTGCCTAGCAGTGTGAAG-CTCTA--TGAGTCG-AATATCCTAGGCTTTCTTCCATATCAGCAAGCCTCTGAAATTTAGGTTTCTTTCTGGAGAATATCACCCACACTTTGGCAGTGGGCTCCTACATTGCCTACATCCAACTCTTGGAAGCAAGAAGAGTGGGCAAAACCAAGGTCACC--ACACAAAAGTATATCCCTACACGAGATAAGTGGAAATAAAGCACTGGCTTAGGTGTGGAGAGGAAGAGACAAATGTGAAAACGCAGAAGG-TAGACAGACAGAGAACATCTTCCAAGGA------GGAAGAGTCTCCTAACCACAAGGAACTCTCT----------------ACTTAATGCTGCGAAGATATTTTAATTACATTTTATGCATTAGAT s canFam2.chr35 28868274 537 + 29542582 TTGTGCTTGGGCATTCAGGCGGAGGTAGGGGCGAGTGTGCTGTTGTTTGAGCTTGGGCTACAAGACATGAAAAATAAGAAAG-CGAGGCAGTAACTGGATATTTTAA-TTTGGAATGGTTTTCAGAAAGGCAGTTACCTCGT--CTACACAGCTCAATGTGT-------------------AGGGTGTGGGGACTCCACCTGAGCCGTAGCATCTCAGGCCTCCTTTCCCAAGAGCCAGCCTCTGAAATCCAGCTTTGTCTCCC-AGAATTTTGCCCTCGCTTTTGCAATGGGCTCCTGCATTGA-TGGGTCGGATTCCTGGAAGCTTGGAGGGCGGGAAAGGGCAAAGCTACCTTGAACAGAAGG----CCCTTTAAGAGATAAGAGACAA-GCAGCATGG---TAGGCTTAGGGCGGAGAGTACAGGTGTGAGG--GTAGAAAGCTGGGGAGGAGCAGGATTTCTGCCAAGGACAGGAAGGATGGGCCTGTGAGCGACCAACAAGTCTCTCCGCAGCACATGCCTGACTTAAC-CTAAGGAGATATTTTAATTACCATTCATTCATATTAT a score=8591 s hg19.chr6_ssto_hap7 96090 303 + 4928567 GGTTTTTAACAACTGGATCTTAGACCAGAATATTGGCAGAATTGGTGGGGGCTTGACAGAGAGC-AGGGTGAATTC-CAACCCTGAGGGTGGAGCAAGAATGATTACAGTGTCTTCC-TCAGAGCTTAGAAACTTCCAAGCTCTAAGGAAAGGCCTTAGGTTTCAAATTGAAAGGCCAAAATAGCTTGAGATGGCTCCAGGTATTTTGGCTGGAAAGAGTCTCCTGGCTCTAAAGAACCCCTGTGAGTTCTTCTACAGGAAAATCAGAGGCTCTTGTGTGTGATCTCTA--GTCATCTAAAATATTGA s canFam2.chr35 28868811 282 + 29542582 AGTTTTTAGCATTTTGATCCTAGACGAGAGAACTGGCCAAATTAGTGGGG-CTGGGGAGGTAGCTGGGGTCAGTCCTCAACCCCAAGAGTGGAG--AGAACAGTTACACTTTTTGCCATAGGGGCTTGGAGTGGTCCAAGTT--------------TGGATTTCTAACTGAGAGACCTAAATAGCTTGATCAGACCCCAGGCATCTTGA-TAGAGTAAGTCTCCAGGT--------GCCCATTTGAGTTCATTTATAGAAAAAGCAGAAGATCTATGGTGTGACCTGCAAAGTCACCTAAACTATTGC a score=2648 s hg19.chr6_ssto_hap7 96653 109 + 4928567 tctgaggttgggcctggaatttgacattccACTAGTAGCACCCTAATCCCTCATGCCTTGCTCTCCTGTGCAGCATCCTTTGTGGCAAACATGACACTATTTCCTTAAA s canFam2.chr35 28869093 104 + 29542582 TCTGGGGTTGGACCTGGGTTTTGGAAGTGGAC----AGGACTCTAATTCCACACAACC-GTCCCCCACCTCAGTGTCCTTTCTATCACCCCATACACTATTGGCTTAAA a score=1503 s hg19.chr6_ssto_hap7 96763 22 + 4928567 TGCCTGGAGAGAACCAGTAGAT s canFam2.chr35 28869423 22 + 29542582 TGCCTAGAGAAAACAAGCAGAT a score=12351 s hg19.chr6_ssto_hap7 96811 328 + 4928567 AAAGAAAATATATGGCATCTCTTCGTTACCTGTCTCCAAAAAATGCATCTTGAAACAAACATATGATTGGCCTGGGGGCACACAGCCAATCCTCAGCTAAGCAGGTTTC----ACCAGACAGTATCCCTCCTGGATACTGGTTATGGATA-TTTTCACCGGATAAAAGAATCAAGAAGTGAGGACATCCCAGCCTGATAGAGTGTTAGACTGGT-GGATGGTGACAAACATCATACTCTGTTGCCTCTCAAAGATGCTTTGATTCAACAGCAAACATGTAC--AGAGGACAGCAATTTTGAAA-CATACAACATTGGAAACCCCTAAAAGGTATCAT s canFam2.chr35 28869446 325 + 29542582 ACAGAACATACATGAAATGACAACATTATCTCCCTCCAAAAAATGCATCCTATCACaaaga----attggcctcagggcacatggccagtcagcagccaagcagatttctgaagccaggcagtccccctcccgagtgcctgctGTAGATAATTTTCACTGGAGAAAGGAACCTGGAAATAAGGACGTCCCAGCCTGGTAGACAGTGAAAGTGACAAGCTGGAAACAAATTTCA--------TTCCTCTTAGAGACACTTTGATCCAACAGGAAATAAGGACATAGATAATAGCAGTTTTGAAACCACAAAGCACTGGAATTTCTTAAAAGATGCTGT a score=13089 s hg19.chr6_ssto_hap7 109778 347 + 4928567 AAAAGAAAATACATGACACGTGGGTATTACCTTCCTCCAAAAAATGTATCTCAAAACAAACATGTGATTGGCCTGGGGGCACACACACAGCCAGTCCTCAGCTAAGCAGGTTTC----ACTAGACCGTATCCCTCCTGGATGCTAGTTATAGATA-CTTTCACTGGACAAAAGAATCAAGAAGTAAAGACATGCCAGCCTGATAGAGTGTTAGGCTGGTGGACTGGGAATAAACATTGTAGTTTCTTGTCTCTCAAAGACACTTTAATTCAACAATAAATAAATAAATATGTACAGAGAGAACAGCAGTTTTGAAACTGTATACCATTGGAAACCTTTAACAGGTACCATGA s canFam2.chr35 28869445 328 + 29542582 AACAGAACATACATGAAATGACAACATTATCTCCCTCCAAAAAATGCATCCTATCACaaaga----attggcctcagggcacatg----gccagtcagcagccaagcagatttctgaagccaggcagtccccctcccgagtgcctgctGTAGATAATTTTCACTGGAGAAAGGAACCTGGAAATAAGGACGTCCCAGCCTGGTAGACAGTGAAAGTGACAAGCTGGAAACAAA--------TTTCATTCCTCTTAGAGACACTTTGATCCAACAGGAAATAA--------GGACATAGATAATAGCAGTTTTGAAACCACAAAGCACTGGAATTTCTTAAAAGATGCTGTAA a score=6702 s hg19.chr6_ssto_hap7 110125 614 + 4928567 GTGCATAGAATTTCTTGGGAGTTCCCTTTTCAAAAAAAGCAGTTGTAATCAGATGGATCGAGAAAGAACATGAAATGTTTGTTTGGTTTTTTCCAA-GGCAGAAAGCGCCCACACAATTGCGATCTACTTACCTTTTACTCTGCATGTATTTTCCATTGTGACAGAAAACCTTTCCCTGGTTTTTTCTTATGGG--CCTCTGTTTGCTGTTACCAGAAGTTCCCAGGCAATATT-----------------------------ACAG--TGACTGAGGAAATGCAGGAATATGAATATGAATCAGTCTTATGGAATATCAGTAGGGAATG--TTGATCCGTATTAGTTTTTGCTTCTTGCATGTTGAAGGCCTCTAATTCCCGGACAGTCTTCGTTTGGCCGTCCAGCGTCCTGCCACTCCTATCTCAAGTGGCTAGAGAGCCACAGCAGTCCTTGTCTCAGTATTGGATCGCACTTATGTCCCTATGT-------AGGTTGACAGGGAGAGACTGGTGTAGAAATGAGTGGACAGATGCTTTCGCTCTGTTCTTTGGCCCAGAAAACAAAAATAACTTAAAAAAA--------AAAAGATGCCCACTGGCATTTTTCTCTCTTCTTGGTCTTTGCGTCTCTTTAATCATAGTACAAAATGGAAg s canFam2.chr35 28870353 529 + 29542582 GTGGATCAGAATTCTAGGGC-TTCCCTGGTCACACAAACCAGATGTCATA----GGACAGAGGAAG----------------TGGGTTTCCTGCACCTGCAGAGACATCCAACACACCTGTAATGT-------CTTTGCTTTGCGTCTCTTTCCCATTGTGACAGAAAAACCTCTTCCTACCTCTTCGTGTGGGGGCCTTCATTTGATGGTAACTGAGATTTGCAGGCAGTGTTTTATTGAAAGATTTGAAATGATAGTGAAAACAGGATGAGTGAAGTAATATAGGGAAATGGACGT----------TATGGAATATCAATTGAGAATGGGTTGATAAGTATTTCTTTCT--------------------------TTCCCAGGTGGGGTCCA-----CCACTCACTGTCCCACT----------------------GAGCTGTTGATGGCCCTCTC--------------CATTCAGGTCCTTGGGTCCTGAAAGGGCAGCCAGTGAGGTTCTG--------------------CTGCTTTCATTTTGT-CTTTGGCCCAGAAAACAAGAAGAACTAAAGAAAATGCAGGTAAGGAGATGC----------TGTGTCATCTTCTTTGTCTTTCCCTCTCATCAGTAAAAGTATACGATGGGGA a score=6603 s hg19.chr6_ssto_hap7 111067 260 + 4928567 GGGAGCGAACGCAAGCCGCCTGTGAATGTTCATGCTTTTGTTTGGGTCAAGAGACCACTGTTGC--GATCCTGTTCTTTCCCCCTCGTTACTTTTTTGTCTTCCTTCTGCTGTCGCAATCGCCTTATGTGATGTTGAGGCTCACAGC--ATAGAGGTTGGAGATAGTTCAAGGCAATGCATTGGAGTACATTTTTACTTACTATATGTGCAGAAATAGAATAGAAAAAT-GTGAGGAGGCAGAGGTC--TGTCGCTTGAGAACTGCC s canFam2.chr35 28870886 254 + 29542582 GGGGACCAAGGTGTGCCACTGGTTCCTGTGCAAGCCTCTGCTCGGCTTCAAGGGATGCTGTTGTAGGATTCTGTTCTCCCCCCTCCCTTTC--------CCTTCCTCTGCTGTCCCAGCCACCTTAGGTAATATGGAGGCTCACATCTCACAGAGAAGAGGAGGAATTCAAGACAATCTGTT-----ATGTTTTTTCATTCCATATGTGCAGGAATAGAACAAAAAAAAAGTTAAGAGTGCTAAATCAGTATTTTTTGAAGACTGGC a score=6411 s hg19.chr6_ssto_hap7 111419 237 + 4928567 CTATAACACCCATTTG-TAATAATTTTCAGGAGGTAACTTTCATTTCCTGAGAC------TCCGTGAGCATGCTGGTAATAGTGGTCAGTACCATAGAGCGTGGAGAGCTACTCTGAGCAGGAGATACTT-GGTACTAATGGGGGATACAGATTCTTTAGAATACTGTGTAGGACTTGAAACGAAAAACGAAAGATTAGAAAAGTGTCAGATAATAACCACAAGAAGTTTCCTTTGTGGCCTGAA s canFam2.chr35 28871261 234 + 29542582 CTGGAAGAGTCCTTTGCTACCACTTATGTAGAGATAAGGTTTGTTTTCTGAGGCCCTGGATCCCTGAGCATCATGGTAGT-----TCAGTGTTAAGGGATATAAGCAGCTGCTCTGGGCAGAACACCTTCAGGAACTTGAGAGGGCTACTGATTTTTCAGA-----GTGTAGAGCTTCAAATGGAAGGCAAAAGATTGGACATATGTCAGATAATAACC-CAAGGAGTTTCCACTGTGACTTTCt a score=8132 s hg19.chr6_ssto_hap7 111656 227 + 4928567 GACGTTGAGTTCTTAGGGTCCGCTTCTATTATGCTTGGCAAGAATCAA----GTTCTGATTTTCGTTTCTTTTGATTTCTTCCAGATATA------------ACACAAAGCCATTGAAATTCAGCCTTTTCCTGCCTAAAACGCTTCATAA---TTGTTGTTTGCTCAGTCGGAATATCAAAGGTAAGATTTGATAGAGGAAAGCCATGATCAGAAGAAAACCTGAGAGCGGTGCACTCAACATTT s canFam2.chr35 28871693 224 + 29542582 AAAATGTGGTTCT---GGTTTCCTTCTCCCATTCTGGGAAAGAGTCAATCTAGTCCCGGTTTTCAGCTCTT--GATTTTCTGCAGATACGTCTTAACTTGAGACACAAGACCGTTGAAATTCAGCTTTTTCCTACCTAGAATGTTTCATAATATTTGTAGTTTGCTCCATCGGAGTATTAAGGACCAGACTTGATGGAGAAAAGCCATG-----------------GAGCGATGCACTCAGAGTTT a score=6554 s hg19.chr6_ssto_hap7 112562 775 + 4928567 AAAGTGTACTTTGAGATATGGAAATTACAAACCTATTCGT-GATATTTGT----------AGGCAACAAACAAGTTTTCTTCTAACTAGTTCTCGAA----TCTTGGGACTTATCAC-GGTGAG-ACTGGATTCTTTGAACTATATAAGAAGA----------TGAGAAGAAAACCCATTTCTCGGAACCAAATTTCTGGTGACGATTAACTCTTTCTCATTCTGGTTTGCCCATATATGAGCCTTTGCCAATGTTAATAAAATAACATTGATCCATTTTAAAATTGGCAGATTGCAAGTTGTATGGCAGACTTGGCTTTTCAGTTGGCTGACGGGATTTCTAGAATAAAA--ATAGGAAACTGAGTAATAGGTTTCACTG-AATGAGAGACTAGAGAAGCGTTACACACAAAATTCAtatgtattcatgtgtgtgcgtgtctgcctgtctgtgtctgtttgtgtgtgcatgtAAATGCTTGGGAGGATTATCTTGACTCTTTGATGCTGTAAAAGCAATATTAGGACAGTTTGCAGAAACACTCCTTCATCCTTATGTCATGTCACAGCCAGAGAAACCTGGCTGACTATCAGATTCTTGGGAATTCATAATAAGAAGATATG--------------------CTTTTTTGTTT-------------GCCACATGAAAGGGGGGAATTTAAAATAATTAAATATCCATATCTATCTTCAGGCTATCTACCAACAACATGATTGAAACACTTTTTTTTTTGCGTATAATGTGTAGGATGAGCTTATTTATCACAGCATTCTTCTGAGGAATTAAACATTTAATT--------TTGAAGACAGAACA s canFam2.chr35 28875831 754 + 29542582 AAAGTGTCCTAGAAGAT-TGAGAGTCAGGAACTCATTTGTTGATGGTTGTGAAAACTTAAAAAAAAAAAAAAGGCTTCTTTCCAaactgttcttgaactgttcttgaacGCTAACACTGGTTAGCACCACAGCCCAGAAACTTCCATGGAAGACCTCCACCCCTACTCCAAAGACTCATTTCCTGGTACCAGGCTCCTAGCAAGTGTCCTCTCTTCTTTCATCTTAT--------------GTCTTTGCTA----TATTAGTATATCATTGAGTC-TCTTGAAATTGAAAGGACCTGATGGGGTTGGTGGAATTGCTCTCTTGGTGTGCTCCTGGGGCTGGTAGAATAGGAGGAAAGGGAACTGG----CAGATTCCACTGGAATTAAGTGCTAGAGAAGTGGCACCTGCAGAATC------------------TGCAAGCTGGC--------------------------GTAAGTG-TTGGGAGGATGAG--TGGCTGTTGGATGGTGTGAGA---AAGTTTGAACAATTGGGA-AAGTTCCCTTTCAAGCTT---TTACATTGCTCCTAGAGAAAACTAAATGCCAGTTAGATTGCTAGAAGTTCCTCACAAACAGGTTTGGGGttttgtttttgtttttgtttttttgtttctgtttACCCGAAGGTACAGCGAACACCGTAATT---GTTTATTAATTTTCTGTGACAACTTTCAGGCTCTCTGTCCATAGCATTATTGAAATACTTCAT------AGGGAAATA-GTAGAAGGAG----TTTCAAATAGGATTCTTCTTATGAAATAACCATTTATCTCAGGAAAGCTGAAGACATATCA a score=17571 s hg19.chr6_ssto_hap7 123289 801 + 4928567 TGTTATAGCTTGTCAAGCTTGGAATACAAGGCATGAAAAACAAGAAAGGTAAGGCAGTCCCAGTATATTTTAAACTTACGAGGGTTTTCAGAAGGAGTACTACCTTGTTTTTATGGA-----ATTCAGGGTGTCCAGATTTCAACCTACCTAGCAGAGTGAAGCTCTATGAGTC-TAATATCTT-GGCTTTCTTCCACATCAGCAAGCCTCTGAAATTCGGGTTTCTTTCTGGACAATATCACCTACATTTTGCAGTCGGCTCCTATATTGCCTGCATTTAACTCGTGGAAGCAAGAACAGTGGGAAAAGCCAAGGTTACCACATAAAAGAAGATCCTTACATGAGACAAGTGTAAATAAAGCAGCAGCTGAGGTGTGTGTAGAGGAAGAGACAAACGTGAAAATGTAGAAAGT-----GGATACAGAATTTTTTCCAAGGAGGAAGAGGAATGGTCTGCTCACAACGAGGAACTCTCT----------------ACTTACTGTTGCAAAGATACTTTTATTACATTTCATGCATATGCTGGATTTTAACA------------ACCAGAACATTGGTAGACTTGGTGGGGGCTGGAGAGACAGCAGTCACTCCCAACCCTGAGGATGAGTCCTCA-CCCTGAGGGTGGAGAGAAAATGATTACTCTCTGCCACAGGG-CTTAGAATCGTCCAAGCCTGGGTTTCAAATTGCAAGGCCCAAATAGCTTGAGAGAGCTCCAGGTATTTCAGCTCAAAAGAGTCTCCTGGTTCAAGAGAATTCCTGTGAGTTCCTCCACAGGAAAATCAG----TCTGTTGTGTGTGACCTGAAAAGTTGCATAAA-TATT s canFam2.chr35 28868311 780 + 29542582 TGCTGTTGTTTG---AGCTTGGGCTACAAGACATGAAAAATAAGAAAG-CGAGGCAGTAACTGGATATTTTAA-TTTGGAATGGTTTTCAGAAAGGCAGTTACCTCGTCTACACAGCTCAATGTGTAGGGTGTGGGGACTCCACC-----------------------TGAGCCGTAGCATCTCAGGCCTCCTTTCCCAAGAGCCAGCCTCTGAAATCCAGCTTTGTCTCCCAGAATTTTGCCCTCGCTTTTGCAATGGGCTCCTGCATTGA-TGGGTCGGATTCCTGGAAGCTTGGAGGGCGGGAAAGGGCAAAGCTACCTTG-AACAGAAGGCCCTT-TAAGAGATAAG----AGACAAGCAGCAT----GGTAGGCTTAGGGCGGAGAGTACAGGTGTGAGGGTAGAAAGCTGGGGAGGAGCAGGATTTCTGCCAAGGACAGGAAGGATGGGCCTGTGAGCGACCAACAAGTCTCTCCGCAGCACATGCCTGACTTAAC-CTAAGGAGATATTTTAATTACCATTCATTCATATTATAGTTTTTAGCATTTTGATCCTAGACGAGAGAACTGGCCAAATTAGTGGGG-CTGGGGAGGTAGCTG----------------GGGTCAGTCCTCAACCCCAAGAGTGGAGAGAACAGTTACACTTTTTGCCATAGGGGCTTGGAGTGGTCCAAGTTTGGATTTCTAACTGAGAGACCTAAATAGCTTGATCAGACCCCAGGCATCTT-GATAGAGTAAGTCTCCAGGTGC--------CCATTTGAGTTCATTTATAGAAAAAGCAGAAGATCTATGGTGTG--ACCTGCAAAGTCACCTAAACTATT a score=11185 s hg19.chr6_ssto_hap7 124459 401 + 4928567 TGCCTGGAGAGAACCAATGGATACCAGGAAATTAAAGAAGAAGAAGTATGAAACAAAAAGAAAATACATGGCATGTGTGTATTACCTTCCTCCAAAAAATGTGTCTCAAAACAAACATATGATTGGTCTGGAGGCACACACACAGCCAGTCCTCAGCTAAGCAGGTTTC----ATCAGACAGTATCCCTCCTGGATGCTGGTTATAGATA-TTCTCACTGGACAAAAGAATC---AAGTAAGGTCATGTTAGCCTCATAGAGTGTATCTATCATGCCAGCCTGATAGGCTGGTGGACTAGGAACAAACATCATACTCTCTTGCCTCTCAAAGACACTTTAATTCAATAGGAAATATGTACAGAGAGAACAGCAGTTTTGAAACCATACACCGTTGGAAACCATAAAAGG s canFam2.chr35 28869423 341 + 29542582 TGCCTAGAGAAAACAAGCAGATAACAG---------------------------------AACATACATGAAATGACAACATTATCTCCCTCCAAAAAATGCATCCTATCACaaaga----attggcctcagggcacatg----gccagtcagcagccaagcagatttctgaagccaggcagtccccctcccgagtgcctgctGTAGATAATTTTCACTGGAGAAAGGAACCTGGAAATAAGGACGTCCCAGCCTGGTAGA---------------CAG--TGAAAG--TGACAAGCTGGAAACAAATTTCAT--------TCCTCTTAGAGACACTTTGATCCAACAGGAAATAAGGACATAGATAATAGCAGTTTTGAAACCACAAAGCACTGGAATTTCTTAAAAG a score=14540 s hg19.chr6_ssto_hap7 124968 793 + 4928567 GAAGTGCCCAACACACCTGCGATCTACTTATCTTTTAGTCTGCATGTATTTTGCATTGTGACAGAAAA-CCTTTTCCTAGTTTTTCATATGGGG-CCTCCGTTTGCTCTTACCAGAAGTTCCCAGGCAATATTTTATTGTAAAGAG-------------GAAAATGGAGTGACTGAGGAAATACAGGAATACAAATCAGTCTTATGGAATATCAGTAGGGAATG--TTGATCCGTATTGGTTTCTGCTTCTCGCACGTTGAAGGCCTCTAATTCCCCGACAGTCTTCGTGTGGTTATCCAGCGCCCTGCCACTCCCATCTCAAGCGACTGGAGAGCCACAGCCCTTGTCTCAGTACTGGATCACACTGGTAGCTGTGTTCTCCGCGCAGGTAGACAGGGAGAGACTGGTGGAGAAATCAGTGAA---CAGAGGCTTTCGCTCTGTTCTTTGGCCCAGAAAACAAAAATAACTTAAAAAAAAATAGATGCCTTCAGGGCGCTTTTCTCCCTTCTCCTTTGTCTTTGCGTCTCATTAATCATAGTACAAAATGGGAGTGA---------ACGCGAGCCGCCTGTGAATGTGCACGCTTTTGTTTGGGTTCAAGAGACCGTGTTGC--GATCCCGTTCTTCTTTCCCCCTCATTTCTTGTTTGTCTCCCTTCTGCTGTGGCAATCGCCTTTGGTGATGTCGAGGTTCACAGCATAACCAGTGGAGAT----AGTTCAAGGCTGAACATTGGGCTACACTTTTACTGTCTATATGTGCAGAAATAGGATAGAAAAAC-GTGAGGAGGCAGAAGTC--TGTCGCTTGAAAACTACC s canFam2.chr35 28870433 707 + 29542582 GAGACATCCAACACACCTGTAATGT-------CTTTGCTTTGCGTCTCTTTCCCATTGTGACAGAAAAACCTCTTCCTACCTCTTCGTGTGGGGGCCTTCATTTGATGGTAACTGAGATTTGCAGGCAGTGTTTTATTG-AAAGATTTGAAATGATAGTGAAAACAGGATGAGTGAAGTAATATAGGGA----AATGGACGTTATGGAATATCAATTGAGAATGGGTTGATAAGTATTTCTTTCT--------------------------TTCCCAG---------GTGGGGT-----------CCACCACTCAC-----------------------------TGTCCCA---CTGAG-----CTGTTGATGGCCCTCTCCATTCAGGTCCTTGGGTC----CTGAAAGGGCAGCCAGTGAGGTTCTGCTGCTTTCATTTTGT-CTTTGGCCCAGAAAACAAGAAGAACTAAAGAAAATGCAGGT------AAGGAGATGCTGTGTCATCTTCTTTGTCTTTCCCTCTCATCAGTAAAAGTATACGATGGGGACCACGGGGACCAAGGTGTGCCACTGGTTCCTGTGCAAGCCTCTGCTCGGCTTCAAGGGATGCTGTTGTAGGATTCTGTTCTCCCCCCTCCCT-----------TTCCCTTCCTCTGCTGTCCCAGCCACCTTAGGTAATATGGAGGCTCACATCTCA--CAGAGAAGAGGAGGAATTCAAG-----ACAATCTGTTATGTTTTTTCATTCCATATGTGCAGGAATAGAACAAAAAAAAAGTTAAGAGTGCTAAATCAGTATTTTTTGAAGACTGGC a score=7217 s hg19.chr6_ssto_hap7 125850 240 + 4928567 TTACTATAAGGTCTCTTTGTAATAATTTTCAGGAGGTAACTTTCATTTCCTGAGAC------TCCGTGAGCATGCTGGTAGTAGTGGTCAGTATTATGGAGTGCGGAGAGCTGTTCTGAGCAGGAGATACTT-GGTACTAATGGGGGATACAGATTCTTTAGAATACTGTGTAGGACTTGAAACGAAAAACGAAAGATTAGAAAAGTGTCAGATAATAACCACAAGAAGTTTCCATTGTGGCCTCAA s canFam2.chr35 28871259 236 + 29542582 TTCTGGAAGAGTCCTTTGCTACCACTTATGTAGAGATAAGGTTTGTTTTCTGAGGCCCTGGATCCCTGAGCATCATGGTAGT-----TCAGTGTTAAGGGATATAAGCAGCTGCTCTGGGCAGAACACCTTCAGGAACTTGAGAGGGCTACTGATTTTTCAGA-----GTGTAGAGCTTCAAATGGAAGGCAAAAGATTGGACATATGTCAGATAATAACC-CAAGGAGTTTCCACTGTGACTTTCt a score=8798 s hg19.chr6_ssto_hap7 126090 242 + 4928567 GACGTTGAGTTCTTAGGGTCTCCTTCTATTATGCTTGGCAAGAATCAA----GTTCAGGTTTTCGTTTCTTTTAATTTCTCCCAGATACG------------ACACAAAGCCATTGAAATTCAGCCTTTTCCTGCCTAAAACGCTTCATAA---TTGTTGTTTGCTCAATCGGAATATTAAAGATAAGATTTGATGGAGGAAAGCCACAATCAGAAGAAAACCTGACAGCGATGCACTTAGCATTTTTTCATAAGGGTCCt s canFam2.chr35 28871693 239 + 29542582 AAAATGTGGTTCT---GGTTTCCTTCTCCCATTCTGGGAAAGAGTCAATCTAGTCCCGGTTTTCAGCTCTT--GATTTTCTGCAGATACGTCTTAACTTGAGACACAAGACCGTTGAAATTCAGCTTTTTCCTACCTAGAATGTTTCATAATATTTGTAGTTTGCTCCATCGGAGTATTAAGGACCAGACTTGATGGAGAAAAGCCATGG-----------------AGCGATGCACTCAGAGTTTCACTTGAAGGGTTTC a score=4823 s hg19.chr6_ssto_hap7 126537 80 + 4928567 aagggaTTCATAAGGCGTGAATGAAAAACAGCTATGGGGATGGAGAGAAGGGTTGAATTATGAGAATAAGACCGAAGATA s canFam2.chr35 28871974 77 + 29542582 AAGACATTCATAAGGCATGAATT---AACAGCTTCAGGGATGGACAGAAGTGTTGAATTGTGAGAGTAAGACCAaagata a score=3558 s hg19.chr6_ssto_hap7 136770 55 + 4928567 aacctaagatatcttgctgtgccagaatgtaggtgctcagaattgatgggtatga s canFam2.chr35 28872051 55 + 29542582 aacctaaggtatctttctgtgctagaatgtagatgcttaaaaatgatggggacag a score=8495 s hg19.chr6_ssto_hap7 136842 182 + 4928567 gccagcttgaaagggatctcaatggccaaatctgacacattttgagcattaatgatgacaataagtgattatcaatcttgggaacttaaacacataaatatggaagatgggaagattttccttacagttgtgtgccaagtgataaatgtggaagtaaggataaaattagaaaatcctcattt s canFam2.chr35 28872308 174 + 29542582 gccaacttgaagggcctctcactcgtcaaattggacatactctgagcatgaataatgacaa---gtgattataatccttggatacttaaataaataaatatggaagaagggaaaattttccttatggtggcgtgtgaactgtaaaa-----aagtaataataaggttagaaactcaccacct a score=12637 s hg19.chr6_ssto_hap7 137246 267 + 4928567 aAtaatgagaaaaactgacatcacatgcctcttggtgtgatagagggtaacatgatttctgtgacatt-----------tccatgacctgaatgtaacc--atgactacacaaattaagaaacattcaacaaaaccactggcatatgctcttcaaaaacatattcatgaaagacaagaagattaagaatctgttccaaagtgaaggagactgaaaagtcaagacaactagattcatatgtgattctgaaatggcacctagtttgggagagaaattcctat s canFam2.chr35 28872684 268 + 29542582 aataatgggaaaaactgacatcgcatgcctcctggtgtgttggagggaaataccagttctgtgatactcatcccaaatattcacaatctgagtctggtctaatcacaacataaattgaaaaacattttacaaaatcattggcatatgatgttcagaaacat------gaaaaacaagaagcttgagaatctattccagattttaaaagactaaagaat------aactaaattcataagtgatgctgaaattgaccctagTTGGGGACAGAAATTTCTTT a score=14349 s hg19.chr6_ssto_hap7 137528 419 + 4928567 tacaatta----aaatttttatagactgtatattagagaata---------------------ctattttatcaatgttaagttctctaaatttgataattgtgctgtggtaagaaattgaccttgttcttaggaaatacacattgaagtat---------------------------------------ttaggaataaaaagatataatgtctgaaaatcattatcaaatagtttagagaaataatttttgtcatatgtacatatacataTATatacacacacacatacacacacacacaTATATATTCCACTGTTGCTGATTGGTTGTTGAGGTGAGGAAGAGGCAAGACCGTGTTCTGAAATAATGTCAAGATTTGGACGATATGTGTTTCTCAAATGGTTCCCATTCCATTTTAAATGTTGCTAGGCTGAGACAAAGATACAAATTCCCCAATTT---ATATTAGAATTTAGCAGGTAGt s canFam2.chr35 28873286 464 + 29542582 TAAAATTAGTTTAAATTAATATAGACTGTATATTAGATAGTAATAGTACTATTACTATtagtactattttgccagtgttaaatctcctgaattcaaagtttgtgctgtggtaaggaactgctcttgctcttaagaaatatatgctgacatatataACAAAAGGATTATGATGGAAGTTTACAATAAAAAGATTGTGGATAAAAAGACATACTGTCCAAAAATGGTTTTCAAATCGTTTAGAAAAATAATAATGTCTCtaggtagaaaggtagatagatagatagatg-------atagatagatagata-------------gatTTGTTGGTTATG-GAGGGAGAGGCAC-ACAGTGTTCTGAAATGATCCCAACCTCTGGACAGTTTGTGCTTCTCAGGTGGTTCCCATCCTATTTAAAATATTGCTAAGCAGAAGCTAGAATGCAAATTTGCCAATTTATGATATTAAAATTTAGCAGATGTT a score=18195 s hg19.chr6_ssto_hap7 141785 1244 + 4928567 CTCGTTATATTCTGTGGGTCTCC-------ATTCCTGTGTTCATTGTTTTAGCACTAAGTGTTGGGTTTAGAAGCAGGATTTGTGACCATTTTAAGTTGGA-AGACCCCCAGCT------------------------GTGGGGGATATTGAAGTTTTGGCAAATAAAGCTTGAAATGGAACGCAGAATACTGGAAACTTGCGTTAGAAAACTGACCAGCTTTTTCCTGAATAAAGCACTTCTGCTATTGCTGTTTGCTTCACAGGAATGGTAAGAGCAAAACTTTGATGAGAAAACCCCAGGTGAGAATGAAAACCACATGCAACCTGTTATTCATTGCCAA--GGGGTTCTTGATTGTACTACAGCATGAAGGCAACTGAGGAGGTTCATGGAGTAGTCCAGAAT---AATGTTCAAGACATGAAATAAATAGCAGATTCAAGGATGGAGAAAAACTTTGAAATTTTGAAAGCACATTCATAGGTAGCTAGACACAGGATTCAAAGACTTATTGGATTTATAGAGCAAGCCAGAAAGTGGGGAATCCATAAAAGAGAGC-----CTCAACAAACAGGAGGAAAAAAAGCAGAATAGAGATGCTTATTGTTCTTTG----AAGGAATGGACAAGATATTAGGAGGAGGAGGTGAGTTTGTTTGGGAACGTGTTGAACTTACCATATTCTTCCGTAGGATC--CTGCCCATTGGTGAAACACAGTGAACTTAGCCCAGTGCTCTGATCTGAATACGTGGAGGTGGGAGTGAGTAGAAGGCACCAATACAGT-GTGAGTACAATGAGAACTCAAAGTGTCCTTTGAGATATGAAGATCAGAAACTTACTTACTGATAGTTGTGAAAA-------GCAAAAAAATGAACTTCTTCCTAGCTGATCTTCAACC---CTGGAATTC--ACACTGGTTGTCACCATGGCCTTGAAACTTTCACAAAAGACCCAGA-----------AAGTCTCATTTCCTGG--CTAGTTTCCCAGTAGGTGTTATCTTTTCTCATTCATCTTCATTCTCATTCTCCTTATGTATGACTTTACCTATATTGGTAAGCATATTGCTGAGCCCCTTTCGAGGTTGGGAACACCTTATGGT-TTGGCAGAATTTCTCTCT--GTTGGCTCATAGGGATAGCGGAATAGGTAAGAGGAAACATAA-TGGCAGGTTTCACTGAAATTGGGTATT---TAAGTGTCACCCACAAAACTCTACAAGCTCTGGTGTGTGTGTGTTTGTGCGCGCGCGCGCGCGTGAAAGTGCTGGGAGGATGTGAGAAAAATTATCTAGGCTGTTTTg s canFam2.chr35 28875093 1179 + 29542582 CTTGCTGCATTCCGGGCGCTCCTCCCCACAACTCTGGAGCCCGTCCCCTCAGCAGCAAGGGCTGG----AGGCGCAGGATGCGTGAC---TCCCGGTTAGACAGAGCCCCAGGGAGTCCGCCCCAGGGAGTCCGCGGGGCGGGGGGTACTGATGTTT-AGCAAACGAAACCGTACGGGGAATACAAGGTACTGGAAGCATCTGTCGGGAAGCCGAGCAATG-------GGATAAACCCTTGTTGGT-TTACTGGG-GCACCACGGGGAGGGTCAGGGCAGGACTTTGG-GGGGAAACCCGCGGTGAGCCATCCAGCCGCAGGCAAT-TGATGGGCGCGTCTAGCGGAGGCTCCTG-TGCTCCTGCAGCCCGAAGGGCG-TGGGAAGGCTGGAGGGATCGCCCAGGTCCCGGAGGGTTACGGCGCGAATTGGA---CAGACTCG-GGATGGAAAGAA--CGTGGGGCTTTTTCAGCAAGTTCGTGGGTGTCCAGACACTGCATGGAAAGACCCACCCGCTTCACAGAGCGAGGCA--------------CGCGAGAGAGAACAGCCGTTCGACAGACGGGGT------CCGTGGGACAGATGTG----TTGTCATGAGTGCAGGGGGGCGCAGGGGGCATGGAGGGGAAGAGGTGGGTG-----GGGGGCAGGTCGGATTCAGCG---------GGCGGGTCGCCGGCGTGTGGACGTGGCAC--CGGGCCCCGCCCTGTGCTCAGTCCTGAATACTTGGGGGTGGGTGTGTACAGAGGACACAAGTGTCCTAGTGAGTA------GAACTGAAAGTGTCCTAGAAGAT-TGAGAGTCAGGAACTCATTTGTTGATGGTTGTGAAAACTTAAAAAAAAAAAAAAGGCTTCTTTCCAaactgttcttgaactgttcttgaacGCTAACACTGGTTAGCACCACAGCCCAGAAACTTCCATGGAAGACCTCCACCCCTACTCCAAAGACTCATTTCCTGGTACCAGGCTCCTAGCAAGTGTCCTCTCTTCT--TTCATCTT--------------------ATGTCTTTGC-TATATTAGTA----TATCATTGAGTCTCTT--GAAATTGAAAGGACCTGATGGGGTTGGTGGAATTGCTCTCTTGGTGTGCTCCTGGGGCTGGTAGAATAGG----AGGAAAGGGAACTGGCAGATTCCACTGGAATTAAGTGCTAGAGAAGTGGCACCTGCAGAA-TCTGCAAGCT--GGCGT------------------------------AAGTGTTGGGAGGATGAGTGGC------TGTTGGATGGTGTG a score=23010 s hg19.chr6_ssto_hap7 143351 817 + 4928567 agaaagaaagaaaATTATCTAGACTGTTTGATGGTGTGAAAGTTGTTTCCAGAGTCATCATGTAATTATTCTCTAACTTGCACCTGAAGAAACCAAGATACCAGTTAGATTACCAGAAGTTCCCCACAAGGAGGT----------GTTTCTTTTTTTTTTTTTTT----CTGTTTGCCCCAAAGTACAGAGAACACTGTGAGAATTGTTTAAGTTTCTGTAA------------------------GCATT-CAGAAATATCTATGCATGGGGAGACA-TAGGATGAGTTCCAAATATATGAGATTTTTCTGATGAACCAACCATTTATCTCAGGAGATAGAACTCATTCATACTCAATTACTCTGCTCAGGGAGCCTGCAGACATGCGAATGACATCTCTAGACAATCTACAACCAGAG-AGAAGATTGTAACTGGTTGAGTACTGTTTTCTTAAAGTTGACA------AAAAGGTGGAGTAATAGTTTTCATGTAAGGAGCTCTTATATGATAATCTAGAAATTGAATTCACTCTATATTCTTTGGGATTT---------------------------------------ACATCTTGATTTGTTAACAGGGAGAGGGAGGTTTGATTACACTGTTGTAAGTCTCCCACCTTGATTGAATATTAAAAAAGAATTCCTGAACTAGACAGTAAAGGGTTAAATAATCTTTTTT-CTTCAATTAAATATGTCTTTGAAAAGAATAAAACTCTACCTTTTGAGTCAGATTGACTACATGGCCTGATGGATTGTGTCTGCTTCCATATCACTGTGCAGCCAATGGTCCTGCCCACCTGCCGCTTCCCACACATTCACCCAGGGTCTCACGCATGGCCACGTCCTCATTCCTCTCAGAAGTCCTTAAt s canFam2.chr35 28876272 783 + 29542582 AGAAAGTTTGAACAAT------------------TGGGAAAGTTCCCTTTCAAGCT---------------TTTACATTGCTCCTAGAGAAAACTAAATGCCAGTTAGATTGCTAGAAGTTCCTCACAAACAGGTTTGGGGttttgtttttgtttttgtttttttgtttctgtttACCCGAAGGTACAGCGAACACCGTAATTGTTTATTAATTTTCTGTGACAACTTTCAGGCTCTCTGTCCATAGCATTATTGAAATACTT---CATAGGGAAATAGTAGAAGGAGTTTCAAATA----GGATTCTTCTTATGAAATAACCATTTATCTCAGGAAAG-------------------------------------CTGAAGACATATCAAGTGCATTTCTA-ATACATTAGGACCAGGGGAAAAAATTGTAACTGGTTAGGTGCCATTTCTAAGAAGCTGACAGACTAAAAAAAGTGGATG------TTTCATGTAAAGAGCTTTTATGTTGTGCTCCAGAGTTTGAATCCACACT--------TAGGATTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCTTACAATGTCTCAACTTGTTAACATGGACAGGGAAGATTAGTTATATTGCTCCAAGTTTCCCACCTTCATTGAATATGAAGGAAGTGTTTCTACACTAGGCAGTAAACGATTAAATAATCTTTTTTTCACCAATTAAATGTGTCTTTGAAAAAAAGAAAGCACTGC------------GATGACTACTGGGCCTGAGGAATTGTGTCTGCTCCCACAT-----------------TCCCAGACAACTGCTCCCTCTAGCCCCTTCACAGAGGGTCCCACATGTAGCCACATCTTCTTTCCTCTAAGAGTTTCTTAAT a score=12972 s hg19.chr6_ssto_hap7 144347 297 + 4928567 CCTTAATTTCTCTGTGGAGAAAAATTTTTTTAAAATATGATCTCATTGAAGTATACAACCCCAAAATAAAATATAGTTGAATTTCCAAAATTCATCTACAATGTACCTTAAAATGATTCACTATTGTCCTAGGCCAAAGATAGGCACTGTTTGCTCTCAAAGAAGTACTTCTATCTGTCAT-ATGTCATTTGTTTTC-ATTGTCCCAAGATGTTTTTGAAATCTCCATCCTATATTTTCTATAGCTTTCTTATATTAAACTCTTGGTTTTTGCATCCTATCCATTTCTACCCTAAATTA s canFam2.chr35 28877055 290 + 29542582 CTTTAATTTCTCCCTG---AGAAAGCTAAACAAGATATAAGCTTGTTGAAAGATAGAACACCCAAATAAAACATGATTGAATATCCAGAATTCATCTACAATGTACTTTAAAATGAGTCACTTTTATCCTGAGTCAAAGTTAGATCCAACTTGCTTACAAAGAAGTACCTCA----GTCATCACGTTATTTGTTTTTTATTGGCTTACAAT--TTTAGAAATGTCTGTCTGATATTTCCCATAGCTTCCTCATACTAAGTTCTTGGCTTTTTCACCATATCCTTTTCCTCTTTAAATCA a score=24762 s hg19.chr6_ssto_hap7 144644 741 + 4928567 CAGAGGTGGACTTCCTTAAAGAAGTCTATTGTGGGGAGCAGAAAAAAATATTTCCA-----TTTGGGCCTGAGCCCTAGCATAA--------AGCAATGGTAATAATTCATGATAATTTT------------------------------------------------------CCTCATGCTT-----------------------------------------------------------------------------------TTACTATATTCCTTTGCAAATT-----------------------------GATTCCCATGATTGAAGCCTGTGAATAATTTTTTTCTGCCACAGTGAGTATAAGTGGCAAAGAGACATTGTGGAACTGTACTTTGAAAATGAGAGAAGAGAGAGAAAAAATGTCAACAGAACAGAAAATTATCTATTTCCCACATCAA-GAAAGTCTGGGTCCTCAGTACTAGCTCTGAATCTTTCTTTAAAGAAGTAAACT-GAAACCCAAGACATCTTAATCTGAGAAAGAATGACTTTTGGAACTTATTTTCTCCATTGAAAATTTCCTAATCACTTCACAGGGACAGAGGTGGCCTGATATTATATC------GGAAACCAAGGATTTCCCAATTCTTGAGATATCCTTCAGCTCACACTTTCATTAGGGTTAGCAAAGGGTTTTGGATCTTTAAAATCTATCACAGGGCTTAGAATACAAAGTGGTGTTAATACAAAAGTTCTTGAAGATTTGGTGGTAGCTGATGAGAAGAGGGCTGTGTATTCTGGAATGATTACAAGGTCTTATTCTATTTAAAATGTTTCAGAG------CAAGGATACAAACTTCCCAGTTTACATTAGAAGTTAGCACAGCCTTTATTGCAAAACTTGCGAA--------AAAGAAAATAAAg s canFam2.chr35 28877525 911 + 29542582 CAGAAGTGGATTTCCATGGAGAAGTTTATGGTTAGAAG----GAAGGATATTTTTAAAATTTTTGGGCCTGAGTCCTAATATAATCCAGAAAAGCCATAGTGATGATTTATTACATTTTTTTTTTTAAGATATTATTCGATCTTGGGACTCGATCCTCGATCCTAGGACTCGATCCTCGATCTtaggactcgatccttgggactccaggatcacgccctgggccaaaggcaggcactaaaccactgagccacccagggatcccCAATTCATTATATTCTTTCTCAAATTTTGCCTTTTTTTCTTTTTGCAACTTGATGAATTCCCATAGTTGGAGCATGTGAATAATTTCCTCCTGACATGTTG----------GCAGGAAGATACTGTAAAATTGTACCTTGATAAAAAGAAAAGAGA----AACTATGTCAGCAGAACAGAAAGTGA-CTGTTGCTCCCATTAAAGAAAGTCTGGCTCCTGAGCACTAGTTCTGACTCTTT-TATGGAGAAGTAAATTCCAAAGCCAGGACATCTTACTTTGAGAAAGAATTTCCCTTGGAAGTTATTTTCTCCTTTG-AAATTCCCTAATCGAATCACAGGGAAAGAGGTGTTGTGACATTGTCTTTGTTCAGGGAACCAGGGCTCCCCCAATCAATGCATAATCCTTCAGCCCACACTTCCATTGTGGTT-GCTAAGGGTTTTGTATCTTCAAAATTTATCACAAGGCCTAATACCCAAAAGCAGGCTAATACCAAAGTTCTTAAAGATTTGA-------TGAGGAAGAGCCAGCTCTGAGTATGGAAATGATTACAAGATACTATCCTACTTAAAATCTTGCTGAGCAGAGACAAAGATACAAAGTTCCCAGTT--CATTGGAAGTTAGCACAGTCTTGAGTGCAAAACTTGCAACATTTTATTAAAAATTAAGAAA a score=14297 s hg19.chr6_ssto_hap7 145685 535 + 4928567 CTTCACATCATATTCAATCATGAATAGTGATT-CAAAAAATATTACTAAGTACAATATTGCCAGAGAGGCAAGGAACAGAGTCAATGATTAGAACACAAAAATGATTCAGCAATAGAAATATATATTTTTTGCAATTATGTTTTCT--GTTAGAATAGAAAATTGGGGGAAAAAACACAGCCGCGTATTTATACTATACACCCTTACTCCATCCACGTCAAAGCACGTCATATtgcttctta------aatgtgcaaaagaatctcttgtggatcttgttaaattgctacttctggttcagtacgtctgaggtgaagctgagatttcgctcttctaacaagctctccggtgCCACCAACTCTTGTGTGGACCAAGAGTCTGAAAGATATCCTTACGATAGAGGGCGCACCTGTCTTAGGTAAAATTACTTCTGTAA-------CGTCATCTA----AGGGAAGTCAAATTATCCGGCAGGAGTGAAGACAGAATAAAACTGGAAATCAGTCCGTGAACTTTGAGATCTTCAGCAGAGCATGCTTCCCAGTGGAGC s canFam2.chr35 28878436 488 + 29542582 CTTCACACCAAATTCAACTATGTATGTTGATTGAAAAAAAAATTCATAAATACTATATTACCAT---GGCAGAGAACAAGGTCAATTATTAGAACAC-AAAATGGTTCAACAATAGAAGTACA---TCTTTGCAATTATTTTCCCTACATTGAAATAGGAAATTGGGGAAAAAA--------------TTAAAATACAGAGCCCTGCCCCAGCCCC--CAAACC-------AGtgcttttcaaaggttaacgtgcaaaggaatcacttggggatccagg-----------ttctagttcagaaggtccggagtggaggggaca-cccgcatttccacccagctctcagatgccacccactgttg------------gtcc---agggatcgcgctGATGGAGGGCGCACCAGCCTTGGGTCGAATGACCTTTGCAAGTCACCGCAGCATCTAGTTCATGGCAGTC-----CTCGGTTAGGATCTAGGACAGAACCAACCTGGACATCAGT--GTGACTGTTGGGATCCTGGGCAA---ACGCCTCCCGGCGGCGC a score=4803 s hg19.chr6_ssto_hap7 167570 97 + 4928567 AAATTCAAGGTATGCTCTTCTACTGGATATGC-----CATCTTAATTTTCTGTAACGGAAACTA----TCCTTTTGCCAACATCTACTCAGATGACTGGACTAATA s canFam2.chr35 28885941 106 + 29542582 AAATTCAAGGTATACTTTTGTGTTGGAGGTGCTGTAACTTCTTTACATTCAGTAAAGGAAGCTACCTATCCCTTTGCCAACATCTACTGAGATGACAGGACCCATA a score=3197 s hg19.chr6_ssto_hap7 168008 80 + 4928567 GTTCCAATTTGAGCATGACATCTTGTTGAAGGTTTAAGAATTAACCTGTATACTGAGAGTACATGTGGCTTCAGGTTGTT s canFam2.chr35 28886047 78 + 29542582 GTTCTAACGTGAGTGGGATAACCTGCTAAAAGTTTAAGGGTGAACATCTGTACTGAG--TACAGGTGACTTTAGACTGTG a score=10785 s hg19.chr6_ssto_hap7 168160 461 + 4928567 CCACAATAAAACATGGGAAAATGTTAATGATTTATTAGAGGAAAAT--------------AACTCAGTTATGAATATTGAAGCCCATTCTAAAGATAGAATTTTTGAAGCTAAAGAATATGCCCTAGATAACTACTATAGGTATTGTAAAAACAATTTGTTTTGAAAACCCAGAGGGCATATTCAAAAACAAGAATCTACCATACAGAAAGGTAGTCGCCATCTCAAAACTCTCATATATAGCAAAGGACTTTGGTCTTCCCAAGATAGCCATTTGGTTGTGCCTAAGTCATTCCCCAGAACTTTGATGTGCCTCGCACATGAAAGCACCCATAAATAATGGCAAGAACAAATTCACTACAAATTTTCAAAATTATTGTTA-GAAAATTTTTCTCAAGAAGCTCTATGGGTAGATGAATCTTTTCTTCTCTGTGTTGATCATAACCCTCCAA--AAAACTAAAACTATAGCAAGGCTT s canFam2.chr35 28886397 375 + 29542582 CTACTTTTAAAAACTGGAAAAAA--AATGAATGATTAGAGGAAACTCAACATCTGAGAAAAGCTCAATTCTGAATGTTGAAACCTATTCTAAAGCTAGACCTTTTCAAGCTAAAGAAAATGCCCTGGACAATTACTCCCGGGATTGTAAAAACAGTT----------------------------------------------------------TCTCCATGT-----------------------GACTTTGGCCATCTT---ATGCCCTTGCGGGGGCGCCTGCGTCATTCTCCAGAACTCTAATGAGTCTTACAC--GAAATTGCTC----AAAATGGCAAGGACAAATTC-CTCCAAACTTTC-CAGTTATTGTTAGGAAAAGTTTACCCAAGAAGCTC--TGGATGACTGAATCTTTTC-------TATTTATCATAAACCCCCTATCAAAAACAAAACAAAACTAAAGCTC a score=5974 s hg19.chr6_ssto_hap7 169016 100 + 4928567 TAGTGAAATTCTTAAGATTCTCCCATTAAAACATACACTTT-TTGTCCTTATTCTCAAAATCTGAGAAAGCAACAC-----AAATTTATGGTCTTCTTTAAATCAA s canFam2.chr35 28886772 103 + 29542582 TAATGAAATTCTTAAGATCCTCCCATTAAAACATACATTTCATTGTCCTCATTCTCAAAA-CTGAGAAAGTAGCTCAAATTAAATTTATGG--TTTTTTAAATCAA a score=1749 s hg19.chr6_ssto_hap7 169804 53 + 4928567 CATTTTCAAATTTTCAGAGCTTTCCTTAGACTAAAACTTTACCATCAGTCCTA s canFam2.chr35 28886875 52 + 29542582 CATTTTCCACTCTCCAGAA-GAACTTTATCCTAAAATTCTACCTTTAGTTCTA a score=12365 s hg19.chr6_ssto_hap7 169945 246 + 4928567 AGGGCCGTAGGCAGCC---ATGGCGCCCAGCAGGAATGGCATGATGTTGAAGCCCCACTTCCACAAGGACTGGCAGCAGCGTGTGGCCACGTGGTTCAACCAG---------AAGATCCGCAG-------------------------------------------------------------------------------------AATCAAGGCCCGGCAAGCCAAAGGGCGCTGCATCGCCCCGCGCCCGGAGAGTCGGGACCCATCTGGCCCATTGTGCTGTGCCCTGCTGTGCGTTATCACATCAAGGTGCGCGCCGGCAGAGGCTTCAGCCTGGAG s canFam2.chr5 24998573 341 - 91976430 AGGCCCGTAGGTAGCCGCCATGGCGCCCAGCCGGAATGGCATGATCCTCAAGCCCCACTTCCACAAGGACTGGCAGCGGCGCGTGGCCACGTGGTTCAACCAGCCGGCGCGGAAAATCCGCAGGTGAGCGGCCGTGCGGGGTGTGGGAGGGGCGCCCCCTGACCCCGCACTCCGCACCCCTGACCCCCGCACCCCTGTCCCCGCGCAGACGCAAGGCCCGCCAGGCCAAGGCCCGCCGCATCGCCCCGCGGCCTGCG--TCAGGGCCCATCCGGCCGATCGTCCGCTGCCCCACGGTGAGGTACCACACGAAGGTGCGGGCCGGCAGGGGCTTCAGCCTGGAG a score=11331 s hg19.chr6_ssto_hap7 170191 179 + 4928567 CTCAGGG------------------------------------------------------TGGCGGGCATTCACAAGAAGGTGACCCGGACCACTGGCATCTCTGTGGATCCGAGGCGGCAGAACAAGTCCACCGATTCCCTGCAGGCCAATGTGCAGCGTCTGAATGAGTATTGCTCCAAACTCATCCTCTTCCCCAGAAAGCCCTCGGCCCCCAAGAAGGGAGACAGTTC s canFam2.chr5 24999069 233 - 91976430 ctcggggcggggcggggcggggtggggtggggGGGCTTCATGGGCCTCTCTATCGGTTAGGTGGCCGGCATTCACAAGAAGGTGGCGCGGACCATTGGCATCTCGGTGGACCCGCGGCGGCGGAACAAGTCCACGGAGTCCCTGCAGGCCAACGTGCAGCGGCTCAAGGAATACCGCTCCAAGCTCATCCTCTTCCCCAGGAAGCCTTCAGCCCCCAAGAAGGGCGACAGCTC a score=3987 s hg19.chr6_ssto_hap7 170371 59 + 4928567 GCTGAAGAACAGAAATTGGCCACCCAGCTGACAGGACCGGTCATGCCCATCAAGAATGT s canFam2.chr5 24999755 59 - 91976430 GCTGAAGAACTCAAACTGGCAACACAGCTGACAGGACCAGTCATGCCCATACGGAATGT a score=9701 s hg19.chr6_ssto_hap7 170430 179 + 4928567 AAGGAGAAAGCCCGAGTCATCACTGAGAAGTAGAGGAATTGCAAAGCTTTCGCTAGTCTCCGCATGGCCGGTGCCAATGCTTGGCGGCAATGCTCGGCTCTTCGGCATATGGGCAAAAAGAGCCAAGGAAGCTGAAAAACAGGATGTGTGAAAGCAAAAATAAAGCCCTCTTGGGGACT s canFam2.chr5 25000363 166 - 91976430 AAGGAGAAGGCCAGAGTCATCACAGAAGAGGAGAAGAACTTCAAGGCATTTGCCAGCCTCCGCATGGCCCGTGCCAATGCC-------------CGGCTTTTTGGCATCAGGGCAAAAAGGGCCAAGGAAGCTGCAGAACAGGATGTTGAAAAGAAAAAATAAAGTGCTATTGGCAACT a score=1286 s hg19.chr6_ssto_hap7 170626 65 + 4928567 AAAAGAAATCTATAAAGTTTAAACTGATTCTTCCTCTGAc-------agaga-----aaggcagtttcttaacagat s canFam2.chr2 44358435 77 + 88410189 AAATGGGATATATATATTCCATTCCAATTCTACCTTTTACCACCTTGAGAGACTTGGGGAGCAATTTATTTATAGAT a score=8384 s hg19.chr6_ssto_hap7 171025 240 + 4928567 ataTGTTGAGATGTTCACACATGCATGTGTGAGGCCCTTCAAAATGTGAGCTGCGGTTAGAATTGGGAAGAGAAGGGAGTGGGG----------------------ATATG-------------TATCTTTGTTTTCTGATTGCCTTCC-----ATATCTTTTAAAACTAGCTAAG----TGCTGCTTCAAGTCAGCCAGATACGAAGGCTTCAATTTATTTAACACAATAAAGAACTTCT-ATTTGGATCCAAAGCTTACATTATGCTTTAATAAAAGTTACCC s canFam2.chr35 28888596 272 + 29542582 atatcttgagatattcatacacgcaggtacaaagcccttcaaaatgtgggatg-------gagcagtaagaaaggagaatgggggtTGTATCATTATCATAATGAAATATGAATAATGAAATATCATTATTATTTTCAGATTTCTCTCCTCGATGTATCTTTCAAAATTAGCCAAGCAGGTGCTCCTTCAAGTCACTCAGATAATGAGAG---AATTTATGTAACACAACAAAGAACTTTTTATCTAGATCCGAAGCTTACTTTACGTTT---TAAAAGTTCCTg a score=823 s hg19.chr6_ssto_hap7 171265 27 + 4928567 TAATAAAGTCAGAAACAATAACAATGA s canFam2.chr35 28889055 24 + 29542582 Aaacaa---caacaacaacaacaacGA a score=4278 s hg19.chr6_ssto_hap7 185810 250 + 4928567 GACAAATGTGTACACTTTACAAGATTCTCAAGACAACAACAGCAACAAAGTTTCTGAGTTTATGAATCTAAGTAGCATTTTACTCCCAGGATCTGAAGTTCAAGTTCTGATCCCTGTGCACCCAAATTACGTCTTTCTCCTCCAGGTAGAAAGCTATCAAA-----ATCCAGCTTTTTCCTGGGCACGCTCTTTATAGCATATGCAGCTGACTCTTCTGCTACTGGCACACT-GCTATTGGATAAAAAGAAGTCTT s canFam2.chr35 28890732 216 + 29542582 GACAAATACGTATGCTTCACAAGATTCCCAGAAAAAC--------CGAAGTTTCTAAATGTAGGCATCAAGGTA-TATTGTACTTAGAGGGTCCAAGGTTCGAGTTCT-CTCCGTGGGCATC---ACGAGATGTCTCTCTCCCGAGCCTACAGCCATCAAGCCCGGACCCAGCT-----CTGGAGGCTCCCCTTACA-------------------CTGGCCCTGGCATGCCAGCTGCAGGCCAGAAACA---CTT a score=9163 s hg19.chr6_ssto_hap7 186389 503 + 4928567 CTCAAGCGCAGAACCGTGAA--------AAAGCTAAAGTTGTTATACAATTGGAGAGCGAATGATTCAACATTTTGTTAATCATTGACCTTATTCTCTGTCCTACTCTAAGGAGGGCATAATGTGTGTCTCCTGCAATCGGTCATAGGAATAATGCTTAAGGTCTAAACTAGCAGAGACTTGAGTGACAAAAAACAAAGAAGGAACCTATTTGAACTGGAGAAAGAAGGTGGATGCTGCAGGATTGAGAGACTTTATGGATTTTAAAAGAAACAAAGATGGAGAGTGTCCTCAGGAAacacacacacacacacacacaGGTAGTGTAAGAGATGGATG---TTGCCTTTCACCAAACTATTAAGTAGAGAAGGAGAAGCAGGAATTATGCTTGTTTGTTTGTTTTTATTTGTGGGAAGTAGGATGGTATCCAGAAGGGGATGAAGC-TGTTTGGTTTTGGACAAGAA-TTTAAAATACTTAAAGG-CAACTTCATGGAAATGTCTGATAAACATGAT s canFam2.chr35 28890948 436 + 29542582 CTGAAGAGCAGAATTGGGGGTTAAAGGGAGAGCCAGGGTGGCCTTAGGATTGCAGAACGG----TTCAGGGTTTTGTGGATCCGGAACCCTGTTCT--GCCCTCTAGGGAAGGAGGCCTGGTGCGTGGTACCAGC---------------------TCAAGGTCTCCACTAGCAGAGGCTTTAGAGACGGGAAGAATAGGA-----TCTTCTGAACAGGAGACGGAAAGTGGA----ACAGGATTTAGTGTGTTGATGGATTTGACAA------------GAGCATGCACTCAAGGAATACACACAGA-----GCTTGACTAATG-------TGGATGTCCTCATCTTTCCCCAAGCTAGTAAGCTG----GGAGCAGTAGCATTTCTGCTTATTTGTTTAT--------------GGTCAGGGGGGATCCAgaa---gatgaaacaagtttggttttgaacaaggatttttagacacgtatgggacggcctcctggagatgtctgataagcactat a score=10124 s hg19.chr6_ssto_hap7 186964 128 + 4928567 TAAGTTGGTAAGGATATATTTTTTT-GTCCATGTTCTGTTTCAACTTATGTAGATTATTATAAATTGATGTAACCCACGTGAGAGGAAAATGTGAATATAAAAATGCAAAGCCCTAACATTTACTCACA s canFam2.chr9 48146318 129 + 64418924 GAAGTTGGTAAGGATATATTTTTTTTGTCTATGTTCTGTTTCAACTTATGTAGATTATTATAAATTGATGTAAACCACGTGAGAGGAAAATGTTAATAAAAAAATGCAAAGCCCCAACATTTGCACACA a score=2651 s hg19.chr6_ssto_hap7 187214 141 + 4928567 AAATGGAAGAGAGGAAGCTAAGCACATATTTCTGGGTATATTTTGCAGAAGACACAGGATGCAAAGTACAAGTGGAAGAGAAAGTGGGGATGGAGCTAAAGTTGAGACA--AAAAAGGGGGCAGAAATAAAAGAAGGAAAATG s canFam2.chr1 11794252 124 - 125616256 AAATGGTAAAAATGAAACCAAGAAAGCATCTCATGGAATAATTGGCAGAAGATA-AAAACTCAGAGCCCATGC---------------TATGGATATAGTGTTCAGACATCTAAAAGAGGGTAGA---AAAATATGCAAAATG a score=1984 s hg19.chr6_ssto_hap7 190340 126 + 4928567 caaagagcttactttctactggaTCTAACAGTTGAAATCAAGCAAACGCTGGGAAGAAAAA--------AAAAATTGTTTCCACTCCTGTGAAAAAAAGAAGTACGAGGATAAAATAAAAAAATAAGGGATGGG s canFam2.chr35 28898237 101 + 29542582 CGAGGACCTTGCTTTCTAGTAGACCTAGCAGGTGACCTCAAGTCA-------GGAGAAATACACTGGCTGAAATTTGTTTCAGGTCCT------------AGCACGAGG--------------TAAGGAACTGG a score=14869 s hg19.chr6_ssto_hap7 190537 444 + 4928567 TTCAGGCAGAAGGAATAGCATTTGTTAATTCACTGAGAATCTGAAATCACTAAGTATTTTCAAAGTTCAGGTTGCTGAACTCTTGTGTGTATGTGTATGGAGCTGGGGGTGGGTGGGGGCGGGGGAAGGAGTGGAAATCACTACAGAGAAAAATCAACAAAAAGGGATAAAGG-GAATTAAATTTCTGGGAACAAGATCTCTCACAGAGATTCTCTATGGCTGAGACTCTGAACATGGTTTAAAATTAGTGTTCTCCAGATTTTCACTAACTACCAAAAAAGGTAACTGTCATCACCTGGCAAATCGTCATCACTTAAG-----CCTAAAGGCAGAAACCACCAAAAGCTTTAATCC-AAACTGAGCTGTCCTCTAGTGCAACCTGTATTAGAGTAGTCATGATAGGTTGAATTTTTGCAAGTGGGCCAATGCCATAAATTGATCTGAACA s canFam2.chr35 28898380 406 + 29542582 TCCCAGCAGAAGGAAAAAC---TGCCAACTCGTTGAGAACCTAGAGGCACCTGGTCTTCCCGAA-CTCAGATTACTGAACTTCTG-----------------------------------GGGGGAGGGAGGAGGAAGGGTTCCCTTAAAAAATCAGCAGAAAGGGGTAAAGGTGAGTTGAATTTCTAGGAACAAGATCTCTGACTAGGATTCCTTATGACTGTGGCTTTGCACATGGTTTGAAATCAGTGTTCCCCAGATTTCCA-TAGCTCCCATAAACACAA-----CACGACCTCCCAAATAATCATCTCAGAGAGAAGCCTTAAAGACAGAAGCTGCAAAAGGCTTTTACCCTAAACTGAACTGTCCTCCTGAAACATCGCTAGTAGTTCAGTCATGATAGGTTCATTTTTAGCAAGAGTGCGAATCCCATAAATGGATCTGagca a score=5523 s hg19.chr6_ssto_hap7 195214 224 + 4928567 TATTTATGCTACATACTACAACATATA-TGTATACTATAATGTTTATAATGCCTGAACCCCACCCATAAAAATGAACATGCCATAACCTGGTCATTGTGAGAACCATAAG-TGTACCCAAATACATCGT------------AGTAGGTAGCAATGCCCTGGCT-AAAGACTACTGCGTGTTAGTACAGGTAAAGAATTAGCACAGATAAATTTTATTCAGTGCCCAAATAAAGTATTTT s canFam2.chr35 28905495 223 + 29542582 TATCTGTACAATATATGATAATAtgtactatgtaacataatgtctagaatttctggactctacccacaaca-tataagtggcacgccccagtcatagtgacaaccaaaaaatgtccccaaatatatttttaaatgtAGATCAGAAGGTAGCAATGCTCTGGCTTAGAAACTGCTGAATATTAGCGCA-------------CTCAGTTA--CTTTACTGCTAGAATAAACAAAGGATTTT a score=3486 s hg19.chr6_ssto_hap7 195738 103 + 4928567 CTCAAGTGTTGTACTCCATAGTTTCCCTTTAATGAAAAGCTGATTGCTTTTTTGAAGAGAACTTCGTATTTTTTATCTCAGAGTTTCCTTTTAAAAGAAGCAg s canFam2.chr35 28905720 93 + 29542582 TTCATATGATTTGCTCTATGGTTTCCTTTTAATTAGAAGTTGATTCCTTTTTAGAAGGGCA-TTCATGTTCCTTAGCTT--------CTTTTAAAAGAAA-AA a score=5642 s hg19.chr6_ssto_hap7 196139 199 + 4928567 GCATATGTTAGTTTGTTTCCACAGTA---AGTGAAGACAGGCCATGTCACAAAAAGACGGGGAACAACACTGGACTGTAGCTCGTAGACAAAGGAAACCTTGAGAAGTTTAACACTGTATCATAGTTTTAGACAGAACACAATAATTACATTGTTAGAACAAA------GTACTTAAAGAACTGATGTTACTTTTTTTTTCTTT-----------ATTT s canFam2.chr35 28905813 211 + 29542582 GCATATATTAGTTTGTTTCCACAGTAGTGAGTGAAGAAAAGCCATTTCACAAGTAAGTTGAGAGTA-CA-TAAACTATATCTCCTGGAGAGATATAG--TTGAAAAATGTAACACC--ATCATCGTTTTAGATAGAAGGGAATAACTA-ATTATATTAACAAGTATATGGTACTTAATAAATCTAT-TACCTTTTTTTTTCTTTTAAAGAGCATAACTT a score=7031 s hg19.chr6_ssto_hap7 196338 128 + 4928567 AAGAGCATAACTTAACAATAGTCCCACTTGGTCAGGCCTATGATCCCCCCAGTCTATTACTGTATGATTCTGAAGCTGTGGGAGGAAGCAATGCCCTCCTACATATCAACTCATGAATTACATATACA s canFam2.chr35 28906213 126 + 29542582 AAGAGCATAACTTAAATATAGTCCCACTTGGTCAAGGTGATGGTCCTCCCAGCCCA-TACTGCATGATCCTGAAATTGTGGAACACAATGATGCTCTTCTAGAC-TCAACTCATGAGTTACATATATA a score=12726 s hg19.chr6_ssto_hap7 197474 958 + 4928567 CCTGGGCATGCTCTTGACAAATTTACTA-ATGTTA----------------AGTGAGGCAAGAAG-------CTGCCATTCAAACATTTC--AAAATTGTTATATTCAAAATATTTCCCTTCTATATCTACTCT---------CTAAAGGTC--AATTACTAGAGAAACACAAAGTTTTACACACATTCATCAGAGGTATATATCTTTTTTCTCTGATATGGGTTTTCTTTTTAATGT---------------------CTAAA--------------------------AAGGTT-------------------CTGATGGGAAATAAGACCTTCATTTTGAGTAAAGCATTTTCCATATTCAGGGCAATGAGGAAGTCTTTCCCCTGTATGAATGTTGGGATAGTTAATGAAGTGTGAGCTCTCAATGCAGACTTCCCCAAATACTTTACTTTTATAAGACTTCTCTCTTGTGTGCAGTCTCTCATACGATGTCAGGCCTCCATTGTGACTAAAGCTTTCTCCACATTCCTTAAAGTGATAAGGTTTCTCTC-AGTGTGTACTCTATGATGCTTAAGAAAGAGTGGGCTCTGATTAAAAGCTTTCCCATGCATAAGATATTTGTAGGGTTTCTCTCCAGTATGTATTCTCTGATGTTT-----GAGATGGTCAGAATTCTGAAGGTCTTATTGCATACATTACGCTTGTG-GATTTCCCTCCAGTATGAAGCCTCTGATGTTTACTAAGATCTGAGCTCCAAATGAAAGTCTTGCCACACTGATCACATTCATAGTGTCTGTGAAAATACAGCTTCTATAATGCAGGCTTTCACGGTGAAGGCCCTTCTATGCTCATCACACTTATAAGGGTTCTCCCCAGTGT---GGATCTTCTGGAGATAGAGGCTAGTGTTCCCACTGAAGGC--TTGCCACAAACTTTGTATTTACAGGGTCTCTCTTCAGTGTGGATCCTTTGCTGTTGAATAAGATTTGATTTCTTAGTGAAGAACTGTCTACATTCATCACTTTTACAACCCCTCTTTCCCATAAGTATTTTGTTCAGTACAG s canFam2.chr1 11806286 984 - 125616256 cctggccatgctcgtgacatgtatattgcatcttacctgcatgagctctctggtgag-caagaagatatgagttgcgactgaagcccttcccacattctttacacttatagggcctctctcctgtgtgcactctgagatgcacatgaagatctgaattccgactgaagccc------ttac-cacacacatcaca--tttatatggtttctctctggtgtgg----tctctttgatgtaagtgaaaatatgagctataactgaagcctttaccacagacttcacatttgtaaggtttttctcccgtgtgaactctctgatgagtgtgaagaaccgaactgtatgcaaaagcctttccacacatattgcatttgtagggcttctcccctgtgtggactctctgatgaatgtgaaggtgtgtgctttggctgaagccctttccacactcaccacacctataaggcttctcccctgtgtgcagcctctggtggacttgaagaacagagcttgaactgaagcatttgccacactcactgcatttgtagggcttctctccagtgtggactCTCTGGTGGACAAGAAGATTGGAGCTCTGATCAAAGCCCTTCCCACACTCCTCACATTTATAGGGCTTTTTCCCTGTGTGTACTCCCTGATGAATACAAAGAAGCGACCTAAA-TCCAAACCccttcccacacacatcacatctgtgaggcatctcccctgtgtggacccggtgatggttgtgaagagacgagttgcgcctgaagaccttgccacattcaagacatttatagggtttgt-----------------------------------------------------------ctcccaagggtcctttttgatatctgggaagttctga--------------gctctgcttgcagccctctgcc-cactcttgacattcataagctttgtcttctgaatgagttttataatgaacagtaagatctgagctctgactaaagtcctttccacactggtcacatgcacaagacttttctcctatgggagtGCTGTGATGAACAG a score=13860 s hg19.chr6_ssto_hap7 199338 543 + 4928567 TTGAAAAGGATTAAGAAATGTTACTTGCTATTTCTACAAATTCTTTCTTGGTTATTAAAATGTCATGTA---------------------------AGTAGCTTTGTAGCAAGTCTTGTGTATAGTAGTTCCTTGCTATATACCTggtat------aaagacgaataagatgccctcttgaaggccacaacctagagatg--------------tccttcagttacaaggcagtgtggtaaatactataa---gagtgaagcataagagctttgggagtgcaaagaaggaaacatctaactgcctgagagaatcaaacagaaagttttgcagcggaatggttgattggcgtatcttaaaacataaatacaaatagtcaga---------------aaaagggaaggcagtaaaagctttctagatggaaagtatatacatacaaagttattaaggcacttttaaaatggtactttcagacagttgagaacagtttggtctagctagaacacagattgaatatgaaggcgaaaggagataaagctgaaaatgtaagcTACATCATGAACAGTCTTGTTGCCAGGATAATGAATTGAACCATTAACAGAT s canFam2.chr35 28906668 540 + 29542582 TTAGAAATCATTAAGAACTGTTACTTG---TTTCTAGAAACTCC--CTTGGTTTTTAGGATGCCATGCTCATTAAATGATTTGTCACACACTGAATAGTAGCTTGG-GTCAAGCTCTGTCTATAGT---TCCTTGCCATTTACCTGGCATCTATCTACAGATGAGGAAGATGCTCCTT---AGGGCACAACCTGGAGGTGAGACACACAGATAAGTGTACAGCTACAACACAGTGTGGCAAATGCTCCAACCAAAGGGAAGTGTCAGAGCTACTGGGG--------------CATTGAACT-CTGAAGACAGTCAAACA----------CAGAGGACAGGCTGATGGGC-CATCTTAAAACATGAGTACAGATGGTTAGACCAACTGTTAGACAAGGGAGGGAGGGAGACAAGAGGTTTTCAGCTGGAA--------CGTACGAAGTTACAGAGGCATTCTTTAGATGGTACTGTTGGCCAATGGA--------------------AGCACAGATTGAGTAGGAAGG-GGAAGGATGTGGGGCTGGAGAAGCAGGCTGGAT-ATGAAGAGTCTTGTTGCCAGGCTCATGAGCTGGCCCATCACCAGGT a score=2497 s hg19.chr6_ssto_hap7 200205 56 + 4928567 ATTAGCTTTCAGTTTTATGCAAGTCACTATAGTGACAGTGTGAAAGATGGTCTTCA s canFam2.chr35 28907225 56 + 29542582 AGTAGCTTTGGGCTTTATGGCAGTCACTGTGGTGATGGCATGGATGATAGACCCCA a score=4827 s hg19.chr6_ssto_hap7 202363 111 + 4928567 GACAGTCAAGAAAATTGAAACTGGAAAGTACCTTGGCCTTTTACCCCAAATCTACACAATTTTACACAGTGGCAGTGCTTTTTCCTCTAACGCTATAAT---AGAATTCTGCAG s canFam2.chr35 28912346 114 + 29542582 GATAGTCAAAGAACTTCAAACTGGGAGCTATTTTAGACTTTTGCCACAAATCTTCAGGACTTCCTTCATCTGCAGTGCTTTCCCCCCTACCCCTGTGATAGGAGAATTCTGCAG a score=2922 s hg19.chr6_ssto_hap7 204424 91 + 4928567 TTTTGGCCCAAATCTCGCGGCTTCGTAAAAATATCGCGATGCTTCCGCTTTTAATGTTTTTAG---TTTGGACAAGCCCTTTGAGATAAATTTA s canFam2.chr35 28916273 94 + 29542582 TCTTGCACCAGAGATCTCGGCTTTCGAGACGTATCGCGATATTCTCGCTCTTCACGTTTTCGGTGTTTTTAACAGTCCCTGTAAGAAATCTTTA a score=1100 s hg19.chr6_ssto_hap7 204833 90 + 4928567 CGATTCTTAAAAATATACGTTGGTAATTGTTTATGCCTACTGCTGAGATCAGGATATCTCTAAAGTA-AGGAGA------GGAAAAAGAAAAGTATg s canFam2.chr35 28916367 84 + 29542582 CGTTCGTTAATACTAGACGTTGGT-----------CAGACTTCTCAG--CAGGTTGATCTCAATGTGTAGGAAATTGGAGAAAAAAAAAAAAGTATg a score=1009 s hg19.chr6_ssto_hap7 205029 65 + 4928567 ACACTGCATAACAGCCCTGATTTTTGCACTAAAATAGAGATCAACAAGCAATGATTCTGTGTCGT s canFam2.chr35 28916555 64 + 29542582 ACCCTGCGGAAGAGCGGAGATTTTC-TGCTAAAGTCGATGTGGCGCGGTGGCGCTCCTGTGACGT a score=3089 s hg19.chr6_ssto_hap7 206302 85 + 4928567 CTCCCTCCAATACATGAGATTTG-TATATTTTC----------TTTCGATTGGAAGGAAATTGTCCAGGAAGTGATTCCCAACATGGCAACTGTAA s canFam2.chr35 28918835 96 + 29542582 CTCCTTCAAAGGTGTGAGATTTGCTGTACTTTCATAAGCTGTAGTCCTGTGGGAAGGAAGTTGTCCCAGAAATGATTCTAGATGTGGCAATTTCAA a score=8123 s hg19.chr6_ssto_hap7 206620 190 + 4928567 taagtactatattttgtataaatcttaattcctgcacatattccatatcaaagtggtattcttgaaaactggattatttctaattttttattttcatcagcaatgctgtaaaaactatccttacataaatattttcaaacatccacgattatttccttaaatttctaaaagtgaaaccattacatcaaat s canFam2.chr35 28918946 189 + 29542582 TAATTATTACTGTTTTTCTGATTGCAAGCTACTGCAGACACCTCACATCAAACCGGtactgttgaacattggattatttctaatttcttactcttgtcagcaatgctgtaaagaacattcttctgtagatattttcaa-tatccataattatttccttacctttcttgaagtggaatccctagTTTTGGT a score=15571 s hg19.chr6_ssto_hap7 207427 366 + 4928567 Acattttaataggtaacaaatgatatagcgcccccccttttttttctgatttgattattagtgaggtccaatattcatgtttaaaggatttttatactccttcc-tcagtaaattgcttaccaaatttttatg-aggtgtccatctttccttattgatttgtaagacttatttTATGAAAAGTAAACTCTTGGGATACAGTTTCTATTTACCAAGAACCCAAGCAGAAATTCCT--------ATCTCTTATTAACAAGAATCCCATTATGTCCCTTAAACATTTAGTTACTTCCATCTTACAGAAACTAGAAGCTATACAATTAACAATGTTCCCATGTCAATTTTTAAAACCCAAC-TGTGGCCCACATTTAGTGT s canFam2.chr35 28919154 354 + 29542582 GCATTTTAATGGGTGAGAGGTGGCAAGGCA--------TTATTTTATGGCTT---TATTAATGAGTTTCAACATT-GTGTTTGAAGGATTTTCATATTCTGTAAATTTGCAAATCGCCTACCAAATTTTTATTCATGTGTTCATCTTTCCTTATTGATTTGCAAAACTCATTATATGAAAGATAAACCCTTGTGATA--GTTTCTATTTACCAAGAACCCAGGCAGAAATTCTTTTATTGTAATTTCTCTTT-----TAATCTCATTAAGCCCCTTAAA-ACTCAATT---TTCATCTCATAGAAACTATGAGCTATAAAATTAACAAGGTTCCCTTATCAATCTTTAAAAACAAACATGTGGGTAGCATTTAGTAT a score=3261 s hg19.chr6_ssto_hap7 208151 54 + 4928567 ATTttttctttcttcctttatggcatgttaaactcctgatgtcttgattttatg s canFam2.chr35 28919508 54 + 29542582 ACTTTTGTCTCTTTCTTTTATGGCATATTGAACTCCTGCTACCTTGACTTTATG a score=31950 s hg19.chr6_ssto_hap7 208506 891 + 4928567 ttttaaatggctttaagtcctttttggaataaggtaaaatataattaaataTGTCAATATTTTAACTATTTACTAATAATATTTATTGCACAATAAGACTCCCCACAGGCCATTCTACATTTTTATGAAAACATCT---GTAAGAGGAATTTTAAAAGGCCTGACAAATTATTTGAAGAGGGAAGCAGAGGGACTAAAAAGGAAAGAAGCTAACAATGGTGGTCTATGAAAATGAAATAAACAAAACAAAAAAACAGGATTTAATTTC-----CAACCTTGAAATGAGTCCCTTGACTGTTTTGTTTGAGGTTCATATA---ACTTGGTTTTCTGGT----atgtccaggatt-acgtgagagtaacagagattggggtggaaattgagatgatgctgtattc-aaatgagactgaccataaattggtagttgaagttgggagatgatataggagggttcgctgtgtattttcttcatttttgtatatGGTTAC----AGGTTTCCATAGTGAAGAGTTCATTCAATACAGAAAAAAAAAAAATCACCAAGTCTCATCAAAAGCATCTATGCTAATATTTTGGCATATTTCTTCCCAGTTTTTAAAGAAATATGTAGGTTCA---------AATCTTT-------CTAA------TTCTCACTTTT--TTCTATTATTCTTTTTGTGCATCA-GAACCCTAAAATGGGTTTGGCAATCACATCCCATACAA--ATCCAAGTTCTTCACATCCTCTAAACAAAGAATCTGG---TAGAGATGTGTGTATCTCTAAAGGTTACCTTCAAATGTCCTGCTTACATTTCAAACTTCAAATGCAAAATTAATTCAACAGATAAGCCAGATCTAAGAAATGTATCTTTTC--TCCAACGGGAAAAAGGAAATGTAA-TGGGGCAATACTGTCAAATGGAAGTACTATTTGg s canFam2.chr35 28919562 884 + 29542582 TTTTAAATGGCTTGAAGTCCTTTCTGGAATAAAGTGAGGTATAATTATATG----AATATTGTTACTATTTACTAACA---TTTACTGTGCAATAGGACTCCCC------CATCTTACATTTTTATGGAAACATCTTCCACAAGAGGGATTTTGAAAGACCTGAAAA--TATT---AAAGGGTAG--AGAGGACTCAAATGAAAACAAGCTGACAGGAGTGGTCCAT-------------ACCAGTTTAAAAGAAAGAATTTAACTCCACTCCCAACCTTGAAATGAGT---------ATTTTATGCAAAGCTCATAAACACATCTGATTCTCTAATtatcatgtccaggatttactttggagtaacagcaat---agtggaaattcagatgaggctatattggaaatgaagttggcaataaattgattgttgaagccaggagatgctatagg-gagttcactcaatatttccctcatttttttgtgtgtGTACTTCAAGGTCTCCATTGTGAAGA----ATTCAGTGCAGCTGGaaaaatcctccataa-tctcatcaaaagcatct--gttaattctttggcatatttctttccagtTAAAAAAAAAAAGTGTAAGTTGAGAAATGTGAAATCTCTACATACACTAAAATAAGTTATCACCTCTATTTCTATT-CTATTCTTGTGTATCACAAACCCCAAACTGGACGTGGCAATTGTATGCAACACTATAATCCAGA-----CAAATCTTCTGAATGAGGAATCAGGGGATAGAGAGGAATGTACCTC--AAAGTTACCTTCAAATGCCCTGGTTACACTTCAAACTCCAAATGTAAAATTAAGCCCACAAATAAGCCACATCTGAGATATTTATGCTTTCTTTCCAGTTGGGACAAGGAAATGTAACTGAGCCACTGCGGTCATATCCAAGTACTGTCCAG a score=29425 s hg19.chr6_ssto_hap7 209542 1090 + 4928567 TAACGCTGGTTTGGTTGGGATTTATTATTACTCTCACAGACTTC-ATATAGGAGGAATTTCTGGTTTCAACAAAGTG-CAGGATTTAGTAATGTGCTTATATCATTAAGTCAAAA-TTTAGTGCAGGACGGAGCTAGTGG--GCAAGTCTCTTAGTCTCAAGAAAAAGGGCACTAAGAAACATAGCCCAGGCATTTAGGCTTCCTCTTACATTACTGTGGTCTGCAATGAGGTCTCCTGGAGCACAAGTTTCACTTCTCCCCAGATCATCTTTAGTTGTACTCTAC-ATTTTTTCACGTTATTTTCCCCCTCT------CCTAATTAACTTTTCAAAGGATAGAAGCCATGCTCTCTTGTATTCTCTTCAGGAG-CAAGTTCAGCTGGGGCACCCAACACTGGTTGAATTGTCT-ATTTGAATAAAAGAA----TGTTTTTCATTTGTGAAGAAGCAACTCAACCACCATTGGTATGCTAAGAAC----CTTTTGAGTTTTGTTTTTTATTTTGCTGGGAGGAGATACGTGATTTCCACGTATACTCTTTGGTCTGCATCTCAGGTAACTAAAGGCATTAGCAAATGGCTCTCATTTACCAT-CTGACAGTTATTTGCTCTTAATTTCATAGTGCCT-TTAAGTGTTAGGC---TGTTACATGCATTCTCTCATCTTCTCACTTAATTGTACATGGTGGAGGGTATGGGCCATGTTCAGTTTCCCTTTATTCTTTGAACCTATCTCTTCTAGGCCTTGTCTGCTCTTGGGGAAGATGGTCTTCTTTGCATGTT-GGCCTTTATCAGAAAAAACAAGAGCACCTGAAGACACACAGGCATGTGCACATACGTGCATGCACAAACACACACTTCCTGGAACAGCAAAAGAATTAAGGAAGAAGTTATTGAAACCGTAATGTATAATTAACAATTGCAGATGTTCTGAGGAAAG----AGAGGGGAGTCAAAGGAATCGGAGTGGGCCCCATA--TGTCTTTAGTGACTCAATTCCTGACTCGGTGAACTCAAAAGTTGCTTACCTTTCTGCAGATGAGTAAACTTAGAATC----ACAAGTTCATTT--------AATCCCATTCAAAATGGCAGG-----CTTTTAAAACTAAAAATATAAA s canFam2.chr35 28920501 1015 + 29542582 TTACACTGGTTTGGCAGAGCTTTCCCATTCCT----GAGACCTCAACGCAGGCGGAATTCCTGCATTCGAGGAGGTGCCCGGGTGTTGTGATTTAATTACACAATCAAGTAAAACTTTTCTTGCAGGCCTGAACCCATGAATGCTGGTGTGTCAGC----------------CTAAGAAGTGATGCCCCAGGATCCAGCCT---CCTCAGACCAAGGCTGTTCACAGGGAGGT---CTGCAGCGCACATTTCCCTTGCCCACACATCAGCTTTGGTTGCTGTCTGCTCCTTTCTCATGTTATTTTTTCCTCTTAACTGACTTTACTAACTTTTCCAAGAACGGAAGCCATGCTCCCTTGTATCCTCCTGGGGAGTCAAGTTCAGCTGGGGGACCCAACACTGGGT-AATTGTGTCATTTGAATCAAAGAATCATTGTCCTTCATTAGTGAAGAGGCAACATACCCACCATTAGTACACTAAGAATGAAACTTTTCAG---------------TGCTGGGAAGAGAT--GCAATTCCTGTTCACAGTCTTTGGCTGGGATCGCAGATAACTAAGGGCATTGACAAGTGG--CTTATTTCCTGTAATGACAGCGATTGGCTTTCAGTGTCATGGCACTTGTTACTTGTTAGTCACTTCTCCCAAGTATT-TCTCATCTTCCC----AATTGTGCACATCCTAGGAGCAGGGCCATGTTCAGTTTCCTTTTATTCTCTG-----------TCTGG-------------TTGGGGAAGATGCTCCTATCTTCCCGCCAGGCCACTATC------------AGCAGCTGAAAACACACAGTAATA------------------------------TCCTAGGGCAGTAAAGT--CTGAAGAATGAGTTGTTGAAGTCTTAGTGTGTAATTAACAGCTTCAGATGTTCTGAGGAAAGAACCAGACAGGAGCCAGAAGGATGGTACCAGGCCCCATGTTTGCCTTAAGCGGCCCAAATCCTCATTCTACGAATTCAGATGTTGCTTATCTTTCTGCAG--GAGTAAATTTAGAATCATTTACAACTTCATTTGGGATGAGGATCCC-----AAATGGTAGGGTTATCTCTTTTAGttaaaaatttaaa a score=3025 s hg19.chr6_ssto_hap7 210632 50 + 4928567 TAAATACCTATAAACACACC-----ACCCACAAGAACTAGAAGATAACCAATAAC s canFam2.chr35 28921714 54 + 29542582 taaataattataaa-ataCCTATGAACCCACAAGAACCAGAAGATAACCAATAAC a score=9973 s hg19.chr6_ssto_hap7 210682 438 + 4928567 ACATGTTGTGGGGCAGGACCTG----ATGTGGTCATGTGTTCCatctcagtttgaatcctggctctgctgcttcctagctgtgtaccttggataagtcatttaccctctctg--ctgcagtttat----ctgtaaagtaagacaacagtacacacttgataaaattatcatgagcattaaggaagctactgtgcataaaactcttcatatgatgtgccaagcacTGCTCTATGTTTGTTAGTAGTATTTATGTGCCTGTATATATATTACCGTATACATTTAGATCTCAGAATATTCAGCAAAAGCTAATCTAGCCTCATGGAAGCTACTTTCTATAG-CCCTGGTTCTATTATTTCCCTTAAAACCTGATGAATAAATGAA-GAATTAGGACATGATATCACCAACTCATGAACCTCAGCCATGGAACCCCAATG----------------------------------------------------------------------------CCTGGCACAATACT s canFam2.chr35 28922523 441 + 29542582 AGATACTGAGGGGAAGGATAAGGTGTATGTGGTCAAGTGTTCCatcttagtttgaatcctggttctgctgctccctagctgtgcaccttgaataagccacttacctcctctgtacctctgtttctgcaactgtaaaatagtgcaatagtacccactttgtaggcttgt---GAACATTCACAAA-CTACTGTGT--------------------------GCCTTGGTCCACGTCT-----------------------ATATATTTCAC---ATACAT-----------------------ACACTA---TATCCTCATGGAAGCCCCTCTTTATAGGTCCTTCTTACATGATTTCACTTTACAT---ATGAATGGAAGAATGAATTAGGACATGATCTCACCAATTCATGATTTTCAGCCATGGAACCTCCATGGTCTGTATAGGACAAACTATAGACCATAAAATCTTGTCTTCTGAGGCCATGTCCAGAAGCAGGAAAGATCCAAATCCCTGGAACAAAGCT a score=3228 s hg19.chr6_ssto_hap7 211120 70 + 4928567 ACAAAAAGGACTTGAGAAAATACTTTCCTAGTAAAATTACAGGATTAACCAATATAAGAACTGTAGGCAg s canFam2.chr35 28923105 59 + 29542582 ATAAAAAGGACTTGAGAGAGCTCTTTCCTACTGAAATTACAAGATTAACCAACACAG-----------AG a score=127304 s hg19.chr6_ssto_hap7 211482 2145 + 4928567 CTGTAGGCTATGAATGTCCAACACTACTTTCTTAGCACCACTAGAAAGTAGTGACATGGCACTGAGAAAGTGGTTTTATTTTCCAGTTTGAAGTAAACTATTGGCCAGAGTGGGATTTTTGCACCCATATGGGAAAGCAACACCATTAACCATTTCCTC---CCCACACGCATTCCAACATCT--GAACCCAATCCTACCAACACCCAGAAAGCAACAACAATGTAAA---------------------------------CATCCATATTCAGTTTATTTTTAAACAGAGGGGCACGTACCCACAGAGAAGCAGGACTGAGAACCATCATGGGGGCTTGCTTGAAGTGATCTGCCCCAGCCTTCTGACTTCAGAGTGTCTCATGATCCAATGGCCATGGGGACGGAGCTGCCCCTTGATAGGATGCACTTAAGCATGGTCAATTCCCCCTTCCCCCAAAGGAAATGGAGAAAAGGAG-CCAAGAAGTCAATGAATCCCTGGAATATTGTCCCAGAATCCTTCCAGGGATGGTATACGACTGGCCACCAGTCCACAAATGTGACTGGTAAGGGATCTAGTAACAGAGGATGGAGTTGGGCAGAATATTATCCTGGATGATATGCACCCAGCACTAGAATACACCTTTCATTAGAATGAAGAGAACAGACAAAGCCCTCAGAAAAGATACAAAGGCAGAGA---CATTGATTAGAACATTATCTCATAACAGAGGTGGGGCCATTACCCACCATTATTGTAAAATAACTGT-AACTAACCAAAACACATACAGGCTTCTTTAATGGAGTTAATAAAACTATGGCACATTGGGAATCAGGGGCAGAGGTACTGTTCCCAGACGGAAAACTGGGATAAAGGGAGCCATGCTGACAGGGCC---TTATTCCAGTCTAGGTTGTTAGAAAGGAGCCCTAGCCCAGAAATGACAGCAAATAGCCATAATCATTATGTGGGGCTGAACCAGAGGAAGCCAGGCTGAGCCAAGAAGCTGGAAGTATCTTGAACGGCTCTCCAAATCCAAAGATTATCCATACTCTTTATCCC-TCCAGCGATGTGTAAAACCAGAAA-GTATGAAACACTGGAGGTGGACATCTGGTTTTTATTTCTAGGATATCTTGATACATCTCATTACATTTCACAATCTGCATGGGAAGGAAAAGGATGGTAGAGAACATGGACATCCTGTCTCCCACTGCAAGGGCGTGGAACATGGTAAGGATACCCAGCTGTGA----CAGGACGTGGCAAGGCAACAAGATGCCTTGTGCCTGGCGTAGGATTACAGCCAACAGCCCTTTTGGCCTGAATTCACCTCCTCAAGGGGAGGTCTCCATGGAATGACCATGATTCCCAACATGGCCAGAAAACCCATCTATCCCACTCATGGGGCAGATGATCAGAGGAGCTGCACTTTTCCCTCCCGAGTAACTCAGACTGAAGTAGGGCCGGACAGGCCCACAAAAGGTAGCATGAGAGAAAGTGAAGGTGTGACACCTCTCTGTCACGTTGTAGAAGGAGACCTCACCAGCATCATAGTCCAAGAAAATCCCCACCCGCTGGAGCGGGGTCCGCAGGGGTAGGGCAGTCATTGGGGAGGTAAGAGCCCAATATTCTTTCCCATACCACAAAGACACTGCCCAGAATCCATTCTGGGGGGCTGAGGTTACTCCACCTTTTCTGCACACTGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACCTCTACCTCCCAATAATGTCTCCCGGCGATGAAGCATGGAGAGCCCAAGACACAGGGAAACAGATTGAACCTCTCGGGGTTGTCAGGCAGGTCCTGTTGGAGGTAACTGTACCGCACTTGCCGCAGATTATCAGAGAGGATCAGGCTGGGGTAGGCCGTGTCTGGGTCCAGAGTCACGTCCACTGCAGAGACACA----------AGGAAGACAGTCAGCCGTGGGCCAGGAGAGCCTATTTTAGAACACCCAGCGCCTTTCTACTACCTCCCCAATAATAAGAGG--------TTCCCACTGGAGGTTGCACGTATTTTATTTAGAATATATTCTAAACTTCACATTTCAAAAATTACTGCTTGGATTAGCTGGTT----------ACCAGAATACACTGAAAATACAGA-ATTTTAGCCCCGTATCTTTTCTTTC-ACATCTGAAGCCACAATATCCATCATGAACTGATTT s canFam2.chr35 28923164 2140 + 29542582 CTATAGGCTGTGGATGGCCAA-ACTGCTTTCTTAGCACCATTAGGAAGTGGT-AGATAGTACTGC-AAAGTAGTATTTTCATCCAGTTTGAAGTCTAATGTTGGCCAAACAGGA--TTCTGGACCCATAGGGGAAATCAACACCCTTAACTACCCCTCCAGTCCCACCC-----CCAACCTCTATGAACCCAATCCTACCAAGACCCAGAAaacaacaacaatgtaaaaaaaaagaaaaacaacaacaacaatgtaaacaacatccacaaTCACTTTATTTTCAAACAGAGGGTCATGTACCGGAAGGGAAGCAGGACTAAG--CCATTGTGGGGGCTTGCTTGAAGTGATCTGCCCTTGCCTTCTGGCCCCAGAACACCCCATGACCCAATGGCTATGGGGA------TGCCCCTTGATGGTGCACGTATTAGAAAGGTCAGTTCCCCCACTCCCCAAAG-AAGTGGAGAAAAGAAGGCAAAAAAGTCAATGAGTCCCTGGAATAGTGCCTCAGAATCACTGCAGGGACAA------ACTGTCAG---GTCCACATATGTGAGTGGGAGGGGATCTAGGAACAATGGACGGTGTTGG-CAGGAAACTATCCTGGATGACGTGCACCTGACACCAGGATACACCTTTCATTAGAATGAAGGGAGCA-ACAGAGCCCTCAGAAAAAATACAGAGGCAAAGAGTACATTGATTAGAACATTATCTCATAACAGAGGTAAGGCCATTTCCCACCATTATTGTAAAATAACTGTTAACTAATCAAAACACATACAGGCCTCTTTAATGGAGTTAATAAAACTACAGTGAATGGG----------------------------------AATTGGGATAGAGGGAGACATGCTGACAGGGCCAGGTAGTTCCACTCTAGGTTCTTAGAAAGGAGCCCTGGTCCAGAGA--ACAGCACACATCCACGACCACTATGTGGGGCTGGACCAGAGGAAGCCAGGCTGAGCCACGG----TGAAGGGTCCTGAATGGCTCTCCAGG------GATTATCCATACTCTGTATCCCCTCCAGTAATGGGTAAAACCAAAAGTGTTGGAAACACTGAAGGTGGACATCTGGTTTGTAATTCTGGGCCATCTTGAT----CTCCTTACATCTGACCATCTGCATGGGGAGGGAAAGGACAGTACAGAGTGTGGACACCCTGTCTCCCACTGCAGGGGCAGAGAAAGTGGGAAGGACATCCAGCTGTGATAAGCAGGAAAAGGCAAGGCAACAAGACACCTTATGCCTGGGGTAGGATCATGGCCAACAGCCCTCTAGGCCTGAGTTCACCTCCTCAAGGGGAGGTCTCCATGGAATGAGCGTGATTACCAACATGGCCAGAAAACCCATCGATCCCACTCATGGGGCAGATGATGAGAGGGGCTGCGCTCTTCCCTCCCGAGTAACTCAGGCTGAAGTAAGGCCGGACAGGCCCACAGAAGGTGGCATGAGAGAAAGTAAATGTGTGACACCTCTCTGTCACGTTGTAGAAGGAGACCTCACCAGCATCATAGTCCAAGAAAACCCCCACCCGCTGGAGAGGGGTGCGCAGGGGTAGGGCAGTCATCGGGGAGGTAAGAGCCCAGTACTCCTTCCCATACCACAAGGACACTGCCCAGAATCCATTCTGGGGGGCCGAGGTTACTCCACCTTTTCTGCATACGGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACTTCTACCTCCCAGTAATGTCGCCCAGCGATGAAACATGGAGAGCCCAAGACACAGGGAAACAGATTGAACCGCTCAGGGTTGTCAGGCAGGTCTTGCTGGAGGTAACTGTACCGCACCTGCCGCAGGTTGTCAGAAAGGATCAAGCTAGGGTAGGCTGTGTCCGGGTCTAGAGTCACGTCCACTGTGGAGACACACAGGGGAAAGGGGAGGACAGTCAGCCAGGGGCCAGGAAAGCACACTAGAGGACACCCAGCTCTTCTCTGC-----CTCCTGTAAGAGGAGAACATGAATGCCCCACAATAGACCGCATTCATCTTG--TGAAATTCATCCTGGAGTTGACATTCCAAAAAGTATTGTTTGGATTAGCTGACTACCTTTCTAAACCAGGACATATTGAAAGTACTGAGATTTTACCTCCATTCCCTTCCTTTTAACATCTTAACTCACATTATCCATTATAAGCTGAATT a score=8797 s hg19.chr6_ssto_hap7 214398 228 + 4928567 AAATCACTCTTTTA-----TCCATTCTATAAGATCTTTACTCTGCACATCGAAGCTCTATTCATCTTCTTCTAATGTCCAGTCCAAAACACACATCCTCC-----AAGTTTTTCTTAATCTGCCCAGGCCATTACACTTACTGT-TCTGAAATCTAAAACTGTGTATGACCCATGTCATCTCCTCTGGCATTTAGTATTACAGCATCTTGCTATCATCAAGTGTTTTCCTGCTTCAAAA s canFam2.chr35 28925573 236 + 29542582 AAAGCAGTCTTTTGTATCCTCCATTCCATGAGATCTTTACTCAGCACATGCAAACCCCATTCATCTCTTTCTAATGTCCAATACAACACCCACATCTTTCTCAAAAAGCTGCTGTCAACCAG-CCAAGTCATCACATGCTCTCTCCCTTAAACCTAAAAC--TCTATCATCTGAGTCATGTACTTGGGTGATCAGTATGACAGCATTTTGCAGTCATGTGGTACTTTCCTGCTTTAAAA a score=79897 s hg19.chr6_ssto_hap7 214963 2846 + 4928567 TATTCTCTCATTTGCTCCTCACATCTTGTTCAGGAGGAAGAGTCCCAAACATTACCTCTCAGAAATTTAAGCCCACAAATTTTTACTCCCACAAAAGACAGGCAACTGATAGAGGTAACCAAGAACCCCAGAACCCTTGGCTCCTGGTTCAACAATCTGTCTACAACAGCTGCCTAC-CTTCTTCTTGTGTCATGGGTATAcctccaaccagacaatgtaaaccccaagagtaggatgacttatgctcttctgttcctctaaaataccctgcacaatgttaggcagtgtaggatacaagcaaagtactcatttaatacttgttgaaaataaatATGGATCAGAGCCACTGCACACCAAGGACTGCAGATCCACTGTATGTAGAGTCCTTCTCTTCATTTAGAGGATAATTCATAACAGAAGGTGACTGTGACTATGGGACGAATACACCTTAGATTTGAATACTTCTGCAATGTTAAATTTACCCAGGCTCT--ATAGTAGGGTGAAAGCGGTTGTGAGGGGGAAGGGAAGTTTCAAACTTTGCTCTGAGGCACAGTGATGGGATGACACAAGACTCCTAGACTTCCTCTAGCACTCAAGAGCACTATTGTGGAGCTCAATCAGTCCTGCTTGTCACAAACCATGGTTTGACCCTGAAGCTGGGCGGGCAGAGCAGTGTACTAGTGTACCAGCTCTGTTCTACTTTTGGGGAACTGCGGTTTCCACCCTATAATCCTTCTTTAACACCTGAGATTGATTTTAC----------CCTATGGCTTCAGCTCTGAGACATTTCAGGAGGCAAAGATACTGTTAACACATAGAAACAACTG--AGGATTTTTGTGGTTGTTGTGTATCATCTTTATACATGTAACCAAAAGAATCCAAATCTAAGCAATTT-CCAAATCATTCATAATAGTAGTTAGGTTCACAAGGATTTTTACTCCTTACCCTAATATGGTTTTGTCTCTCATCACCTACCTGAGTATAACTGAGCCTCTCTTAATTCTGAAAGAATAAAAGAGCAA-AGTT-ATGGAAGTCA--TGAGGGTTTCCAGGAAATACATAACTAAGGGGGCTTTGGTT----------------------------------AGTCATCATAAAGCAGTGGTCTCCACCAGAAACCCCAGAACCTCTGTTGTTAGTCATGCACTAATTTTTTCATATGATGTATGGCTCTATCATCCAACCAAAAGCTTTAAGGGGAGAGGGATTGGGAATCTTAAGTACAGGGATAACCACATGCCTGAGACTGGTAGAATATGGGATAAAACTGAGCCAAGATCAAGAATTCCACCTTCCAGTGAG-------------TCAGCTGATTCTGCAGAGGGAAACGCGGTTCCAACCCCACGTCATACATAACTTTTGAGTTGCATAAGTCATCTGTGTAC-AAGAGCTGAATGGCTC---AAGTGACACTCACTGACACTCTGGGGTAAACATGACCATTCATTTATAAGGCACTTTATAGTTGAAACAGAATTTTTCACACATTATCCCAC-TAAGACTTTTAAGTGGCAAGAAAAGAAG-------------AGCCAGA-------TCAAGGAAAGTCATGCCTGAACTAACCACTTCTGGTATTATCCACTGTATTGAGTGGAGTTTCTCCCCATTTGTCTTGCTTGTAGAGGACAT----GTATCTGCTAGCTCTATGTTGCTAGATGCCCCAAAAAGTATATATCTGAATAGATGCAATGCATATATGAACCCAGCATATACAAAATAGA-AAATTATCAAAGATTGTGGGGGTTTGTAATTTCTAATAATTAAGAGAAGGGTTTACCTACATATAAGGATTTCAGAATCCACCAGACTGCCCAGGAATTTTAGTATTCCTGGGTGGAATAATATATGGCCAACTCTTTACTGAATGTGGCTCGTGAGCAGAAAAATTTTAATTTGGAAAAGCTTCTCC--AAATGCCTAGAACGATTtaataaacataaatataggacttat-----tatgtgtcaggttctattctagaagtgttagaaatggtaaataaccttaattcttatacctcaggaggtaagaactattactgttc----tgttacagatgaggaaattacttgttgaatccttactaagtggtagaggcaggcccagaacccaggcagcctgactcctgactgcccgctcctaaccaTGTCCCTGGCGGTGCTGCCTGTCAGTGCTGCTGGATTCCTCCAGCCCGAGCTGGCACCTGTGCCCACAAGCAGTAGGAACTCAGTAAATTACAATGATAAACACTGGCTCAAGTGAAACGTATCCAAGGTAGTTTTTGTTCATTCTTTCCGAAGT----AAACAATCAAATTAATTCTGG----ATTAATTTTTGGATTGCTTATTTTTCTCCTCCATCAATGCAGACTGCGAATTGACTAAATACAGTTAACAAACTTCAAATTAGAACAAGAAG-CTGTTAATTGAGAAAATTAATTAAGACCAAAGGGAAGATGTAAAATATCAGGGAAGGCTGGCCAATGGGTATCACCCTTATCCCACATTTCC-CACTTTCAGTGCAGATGTTCTTTTTTCCAAGCAACTTT-ACATCAAAAGCCCAGTAGGTAGATAAATTTACCTTGGATTTTCTCCATATCTGACTGCATTTTTTCTAAGAAAAGAAAACAAGAAAATATTCAGTCTGCATCCCACTATCTGGCTGGAAAATTATCCTCTTCATCAGGCAAT--ATGCAGATACTC--AGTATAAATCCATTTCCCCTCA-TGACACCTCTCCTCACATTACCTGTGAACTGCTTTAGACTCTCCGTCAAGAATAGACATTTTTGGGCAAAAATGTGGATTTTCTCTTGCAAATCTGGAGGTGTGATCCAAGGTTCAGGAATCCTGATTCTTTCAGCCCTAAATTTAAAAAACATGAGTAAAt s canFam2.chr35 28925809 2611 + 29542582 CATTCTCTCTCTAA---ACCACAGCTCAGACAGG----------CTAA--ATGGCCTCCATGAA----AGGTTCACGA---------------------AAGCAACTGA------TAACCAGGAGCCCCAG-ATCGTAGATTTGTGGTTCAACAACCTGTGTACAGCAGCGCCCTGTGCCTTTGGGTATGCC----GCGTACTTCCCATCACACACTG------------------TGTCTTATGCTTTGT--TCCCCCCACAGAGCCCTGTATGATGCTAGACGGTATAGGTCATATGCAAGGTATTCAGCTCATACTTACTAGAACAAAATATGGGTCACAG-TGGTGGACACCATTG---GAAGACCTGCTGTATG-------CCTCCCTTCATGGGGAGGAT--TCCA--------------TGGAACTGTGCTAAGTACATACCTAAGATGTGAAGACTTCTGGGACCACAGATCTACTCAGGCTCCTGACCCCTCAGTGACACTGATGGTCAAGGGGTAGGACAG-CTCAGCTCCTGCCCC--AGCTCAGGGAGGGGCTGCCCCGAGGCTCT--GACCTACCCCCTCCCCCAAGCACA-----------------------------------------------------------------GGAACGATGCCCTA------TAGCAGTGCTCCTCTTTTGGGG-GCTGCAAT-------------TCCTACTCAAGCACCTCAGCTGGATTTTCTATTTCAGAGGTCCCTGGCTTTGGCCTTGAGGTATTTTAGGAGGCAAAGATATTGCCAACACATGGAAACAATCAATAGTATTTTTGTGGTTGCTGTTTATCACTTTTGCATACATAATCCAAAGAACCCCAATTTAGGCAATTTCCCAAATCATTCATAATGGTAGTTAGGTTTTC-AGGACCTTTATTCCTGTTTCC-ATATGGTTTTATCTC-CATCACCTACCTGAGTATAACTGAGCCTCTCTCAATTCTGAAAGAACAAGAGAGTAGTAGTTAACAGACACCAAGTGAGTATTTCC--GAGATACCTGAGCA--GAGACTCTCATTAAGAGTCTCCACaaaaaaaaaaaaaaaaaaaaaGAGTCTCCACAAAGCTACAGT-TTCATCAG----CCCTGCATTCCTGTTGTCAGCTGTATACTGATTTCTTGACCCAA----------CATCGTTCAACCAAGAGCTCTACAGGAAGAGGGACAGGGAATTT------------------------------TGGTAGCAAATGGGATCAAACTGAACCAAGGTCAGGGAATCCACCCTCCAGTGAAATGCTCTTCCAATCCACCTCATTTTG-------------GGTTGCTGTTTTTC-TCATGCACAACTCTTGGCCTTCAGAAGCCACCTGTGTTCTAAGGGCTGGGTGGCTCCGTGGGCGATACCCACCACCACGCCAGGGCAAATGCCAGCACTGACACAAGAAGTACTGAGCAGTGGACAAAGCA-TGTTCACAAATAAGCCCTCATGAGGCTTTCAGGTGGGGGGGAGAGTAGGAAAAATTAAGGAGGCCAGATTCAAATTCAAGGGAATTCACACTTGAACTGACCACTTCCGGTATTACCCACTGTATTTAGGGCAGTTTCTCCCTATTTTGTTTGCCTGTGGAAGGCATTGGAGTGTCCCCTA--CGTATGTTGCTAGAGG-CCAAAAAAGTATGTATCTGGAAAGATAAACTGCAAAGAAGGTCTTAGTCTATACAACATACAGGAAACAGCAGAGATTATGGGGATTTGTCATTTGTAACAAAGAAGAG-GGGGTTTGCCTACATGTGAAGGTTTCAGATTCCATTGGACTGTCTAGGAATTTCAGCACT-----------TAGGATATAACCAACTCCTAACTGAATGAGGCTCATGAACAGAAAATTTTACATTTAGAAGGGGCTTCCCTTTACTACCCAAACCACTTTACTTAa-ataaaccttgtatttatgtttgtatatgtcaggctccattctcaaggctttcggaa-----------cttaatccaacaacctcttgaggtaagaacaattcttttcctcatttttgcagacgaggaaaTCA-GTGTGGAATCCTTCCTAAGAGCCAGCAGT-GGCCCAG------GGTGGCCTGATTCCTGCT------------ATTACTCCCCCGG---------------GGGCTGTTTGA--CCCCCCACCCTGGTCAGCACCAATGCCCATGAGCAGGAGGGACTCAGCAAGTTATAACCTTGAACACCGGCTCTGATGAAACACAATTAGGAGAGTTTCTGTTCATTCTTTTCCCAATTAGAAAAGAATTAAGCAAATTCTGGATTAATTAATTTTTGGGTTGC-TGTTTTTCACCCCCATCAATATAGACTGAGAACTG---------AGTACACTGACTTCAAATTTAAAAAAAAAGACTATCAATTGAGATGACTAA-----AGCAAAAGGAAGAAGCAG---ATCAGAGAAGGCTAGCCAGT-GGTGTCACTCCT-TCTCATTTTCCCGCACCTTTAAAGTAGATGATCACTTGCCCAGGAAACTTCAACATCAAAAGCCCAGGAAATATAGAAATTTACCTTGGATTTTCTCCATATCTGACTGCATTTTTTCTAAGTGGAGAA---GAGAAGACATTCAGTTTGCATCTCA-TATCCGGCTGGA----------------CAGGCAAGCAAGACAGATATTCAGAGCATGAATGCATTTCCCCTAAGGGATCCCTATCTTCCTGTTACCTGTGAACTGCTTCAGACTTTCCGTCAAGAACAGACATTTTTGTGCAAAAATGTGGATTTTCTCCTGCAGATCTGGAGGTGTGATCCAGGGCTCAGGGATCCGGATTCTTTCAGCTCTaaaaaaaaaagaaaaaaaaaaaa a score=17979 s hg19.chr6_ssto_hap7 218104 575 + 4928567 AGTAAATTCTTTTTC----CCAATTCCATGACCTTCCAGGAACTAGGACAGGGGCTAAGTTAAACTGTCTAGCGTACACGGACAGTCTTTAAAATCAGCCACTACAGCTTTTCCCACCTTCTCTTCCTGAGCTATGATCCTCTAGACCAAAATAGG----ATACTGTACTCATTCTCATACCCCCCAAAGCACCTAGCTCACAGCTTTTCAAATACTAAGTACTCAAAAAGGTTTACTGAATTA-----CATATGAGGCTGACTTTGCCAGAAAGCACTAGATTCCATGAC--AGTCCTTGATATTTATGGTGGGCAATTAACCCGAATTCTCAGGTTCCCAAATATGGAAAGAATGACATGTTCAGATAGAAAGGCACTGTGGGGGACATTACCCAATTCCCTAGCCCTGCAAGGATGTCtat-agcaaagactgccagttgcctatccaataccccttctgccatcttctgccttttatggctcacagctgcccagtccctcatagctagatgtgaccttgtgactaagttctggcctatgagaagtaagACGTATCTCATGGTGTTTTGAGAAATCTACTTAAAAATG s canFam2.chr35 28928429 519 + 29542582 AGTAAATCCCTCCCCTCCTCTAACCCTATGAC--TTCAGAAGCCCAGACAAAGTCTGGGTTAAAATGACCA----------ACAATGTTTAAAG-CAGCCCCTACAGCCTTTTCCCTCTTCTCTGCCTAGACTGTGATCCTCTGGACAAAAGCAGGAGAAACAGCTTCCTCATCTCCATTCCCCCAACAGGACCTAGCTCATGGATTTTCAAATGGCTTGTCCTCAAAAAGGTTTACTGAATTAAACCGAATAGAAGGCTGACCGTGCCAGAAAGCAAAAGATTCCATGACAAAGTCCTTGAGCTTCATGGTGGGCAACAATCCAGA--------------------GGTAAGAAC--CCTTTTCAGGCAGATTGGCAC-----------CCACCCTGTTC------------AGGGGGTCCATGATCCATGACTGCCAGCTGCCTCCCCAATATCCCATCTCCCAAGTTACACCAC-----GCTCACGGCTGCCCCGT---------CTAGATGCAACCCTGTGACTGAGCTCTGGCCAGTAAGAGGGAAGGAGTGTCTCATGGCAATCTGCGAAGCCTACTTCAGGGGG a score=3026 s hg19.chr6_ssto_hap7 218844 181 + 4928567 AAGGTAATGTGATGCGACTTATCTCCTTCTTCTtggttggcattctaccagctattgtggactatatgaggaccataccttagggatggtagaacagtgaatgggaagaaacctgagtctctgaggatcactggagttaccacactagccacagactacctacctgcacatttcttactat s canFam2.chr35 28928948 145 + 29542582 AGCGTGCTGTGACGT-ACTTATCACCCTCATGCTGCCTGGCGTTCCAGCAACCATCCTGGAC----------CGGGACTTCAAGGACAGCAGGAGAGCGGAAAGAAGGAAAC-----TCCCTG--------------------CTCCGCCCCTGGCTACCTACCTGCACCTTCCTCACAGG a score=41376 s hg19.chr6_ssto_hap7 219318 1480 + 4928567 tgcacatttcttttattatgtttaagccttaagccaataaaattttgggtttcctatcttatatagccaaattcaatcctTAATGTCACAAACTGCTAGGGTCTGAGGCAGCTAACTCTGTATGTTAGGTCACAGCTAGACTGGCATCATAAAGTATCAGGTAACAGTATTATTTGCTTAGGTCATCTGGCTGGGACTGGTATGAACTCCACCTTATCTCCATCCTAGGATCCCTCAGGAACCTCAATTCCATCAACATGATTCTATCAACACAGGCCTCCCAGCCAAACTGCCCCATCTATAAGGACCTCCCCAATCTCCTTAAATGCTCCCACATAGTCAAGCTGCATTTTGCTTTAGAAGGTTTTCACCATTCAGGATCTTAATCACCTTCACAGTACAGCTTCCTCAAAGTCAGTTTCCACCCCTGAAGGCATTCTTACACCAAACATGAGCTTCCCAAGGCCCATCCCACTTGCCTCGTCATCCATCCTGCAAA-ACAACTTTGCCCTGGCTTACTGCCCCCTCCAAGCTCTCCCTCTTTGATCGTGTTCCAGCTGCCAGGGAGTTCTTCCTCACTTTTTTTTTTTTTGATGGAACATAGAGAAATAGCAAGAGTAAGAATAAGAGCCAGAATCCAGGTGGCTCATCAGTAATTATGTAAATGCAGGCCAGTCACACCTTTCTTAGGCTTTATTTCCCCCATTACAGAAAAAAAAAAAAATGAGATAATGAAGGGGGAAAGGATTCTGAAATGTATAGGAAGCAATAGACATAAACTACCCTTATATTCAGCCCAGGTCCCTGTAAGGCCACACCCTCTCCATGGAAGTGTCCTCATAC--------CCCTAATCCACCGGCAGCCTCCCACATGAACCCCCTACTTCCTGAATTTTACTGAGTAGAGCTGTGGTTCATCTAATTCTTTGTATACTAGTGACTCTCTTCAGGGA---------TATGTGTCAATTTGATAAGATGTCCATCCTCAGGCTCAGGGCTCCTTTCAGGATTTACAAATGTGAAGGAGACAGTCTTCTCATATTTGATTTAACACTAGGGAAACAGAAAACTATACCTGCTCAATGTGTCCCCAATGTCCTGCAAGAGAAAGGAAAAAAAATAACCATGAGAAGTCATTTAAAACTTCGGTTTTCTTTCACAGATGTTTGTTGAAAAACCAACTACAGACTGGCTCTCATGGGAGAAATTAGGGAGAAAAGGATCACTGGAACATAACTCAGTGTTGAGGAGCTAAAAGGCAGGCAGAGGAAAATGGGATGCATACTATTTGCTATACCAGCATTTCCCATACCCTCCTTCAGTACCCACCATCCACTGGTCAAGGACCTCAGGATTTCAAATTTACTAACTTAAGCGTCCTATGATTGGACCTCAAGCTTGCCTACCTGTCCAGCTTGCTTT--Ctttttattatgaaataatttcaaatacacggaaaagctgttagtacaaagaactccagtatac s canFam2.chr35 28929093 1272 + 29542582 TGGCAATTTCTGAAATTATGTTTCAGCTTTAAGCCAACGAAATTTTTGGTTTCCTATCTCATACAGCCAGACCCCAACATTAATGTCATAAAACGCTGGGCTCTGAAGGGTCTATCTCCCCATGTCAGGCCAGAACTGGACCGGCATCAGTGACTGTAAGG-----GCAGGGATCACTGGGGCCATCTGGCTGGGACTGG-ACACGCTCCAATTCATCTCCCTC-------------AAACCCTCGATTTTACC--CCAGAATCTCTCCATGTGGCACTCCCAGCCAACCTACTCTATCTATGAGGCCC---------------------------TGGCCCAGCT-CATTT--CTCTGGAGGGCTTGTACTGTGCAGTGTTTTAAACAATCTGAAAGTTCAGCTCCTTCTAAGTCAGCCTCTGCCCCTGTAGATGCTGCTGCACCAAAC---------------CCCAGCCCATGGGCCCC--TGTCTGTCCTGCAAACACAGGTGAACTTTGGCATCTGGCCCGCTCCTCCCCGTCCCCATCAGATCAC------ACAGCCAAGAAG-----------------------------------------------GAATGAGAACAGGAGCCTGTAT-CAGGTAAGTTAGCACTGATTCTGCAACTCTGAGCCACCCACACTCCTCTTAGGCCATATTTTCCCCATCATACA----------------------GTTGGGGAGAGGACTCTGAA---------------------------ACCCTTGCACTTTGGCCAGCTCTGTGTGAGCCTTTG--CTCTCCACAGATGTGTCCTCACAAATCACAGGTACTCATTCACCCGCAGTTTGTCA----------GTAATTCCTGAG-TTTACTAAGCAGAACTGTGGTCCATCCAGCTCTCTGCACACCAGTGACTTGGTCCAGAGACGGGCAGGCTGTGTTTCACTCTCGTCAGATGTCCTTCTCT--------GGCTCCTTTCAGGATTTATGAGTCTAAGGGAAACA---TCCTCCTGTGTGACTGAGCACTGGAGAGAGAGAACACCGTACCTGCTCAGTGTGTCCCCGATGTCCTACAAGAGAAAGG--AAAAGATAACCATGAGACCTCGT----AGCTTCAGTTTTCCTT--CAGATGTTGGTTGGAAACCCAGGAACCAGCTGGCCCTCCTACGAAAAGCCAGGGAGACAAGGACCAC--------AACTCA--GCCCAGGACCT-AGAGTCAGGGTGAGCAAAGTGAGATGCACA--GTTTGCACTCCCAGCATCTCCTCTGTCCTGCTTCTGC--------CCCACTGGCCCAGGATCTCACGATttcaaatttccaaactccagtatcccaccctcagaccacaa--ctgcctacttgtccagcttgctTTAACtttttattgtgaaataatttcaaatacacagaaaagctgctagtac--agagctcctggatac a score=10468 s hg19.chr6_ssto_hap7 222239 323 + 4928567 tttgcattcctaccagcccactggcatatgag--tgtctctccgaca-cttcgtcaaaagtgtattaagtt--gaaaatttt---------------------tgctattgtaacgagtaagaaatggtattttagtgtggttttagtttgcatttctcttattataagtacagctgagcattttttcacatgttcacaaagcaattt---atgtcttttgcagcttgtctatttgtgccttcaacccatttttctctagaattttggtcttttctctcgc-----aatacttaaaaggtctttttatattagaactatcaCTTGTATTTGTGATATTTGTGGCAAATAT---TCAATTT s canFam2.chr35 28932915 346 + 29542582 tttgtcttcctaccagc--------atatgagattctctctcccacatccttgctaacagtgtactgaattaagaaaattttgcttaaaaaaaaaaaaaaaaattctattctaatgggggaaaaagggtattagagcatggtttttatttggat----cttattaaaagtacagtagaacactttttcgcaagttcctagtccaattttacagttcttttgcaaattgcctgttcatatcttgtgttcatttttctatagaactt--gtcttttccctccctcttaattttttaaacgttctttatatattaTTTCTATTATCTCCATTTGTGATATTTGCTACAATTTTCTTTCAATTT a score=5526 s hg19.chr6_ssto_hap7 222562 152 + 4928567 TAATACTA-TCTTCTGACTGGTTACAATGTGTGTGCGCTTTTTTCT--TGTACTAATACCAACAGCTTTAATTATATGGGCTTTAAAATATGGTGTAGTATCTAGTAGGGCCAGTTCTCCCTCAGAGCTCTTCTTTCACAGTGTAGCCTACCTAT s canFam2.chr35 28933426 152 + 29542582 TCACACTGGTCTTTTGAATGGTGACAGTGTGTATGTGTGTTTTTCTGCTGAGCTGTTACCAGCTGGTTTGGTTACACAGGCACTGTG-TATAttttaatgtctaatagggccagttcccacccacagctcttctttctcagttt--cccagctat a score=4000 s hg19.chr6_ssto_hap7 223190 78 + 4928567 TATTTTTCTATCTGAAGTTGACTGTCAATTTGTCTAGATCCAGAAAAAGAGCTTGTTGGTATTTTTATTGAAATTGCA s canFam2.chr35 28933578 75 + 29542582 tatttttctatctgaaccttactatcaatctgtttagctctagaaaaagtgtgttctg---tttttgttgggattgca a score=742 s hg19.chr6_ssto_hap7 223437 193 + 4928567 CCTGTCTTatcaaagaataagtgatatctctttatttgttcaagtttattttgtgtctttcaggaatctttgaatgttttataattttctccacataggtttttgtatatttcttataaatttattcccagatattttatcacttgttttttttttgcaaatggaaacagcatgttctcttctaatatgtctt s canFam2.chr35 28933702 90 + 29542582 catgtcttggccaagaacaaa--------------------------------------------------aaatgtcttattacttt-----------------------------------------------------accttttttctttTTGCAATTGGAAATGGAGTACCCTTTTCTAAACTGTCTT a score=11265 s hg19.chr6_ssto_hap7 223680 327 + 4928567 ttctttcccaatttgtatacctataattattttatttaactgaactggttagaacctttaatgcagtgttaaatagagataaatgatactgggcatccgg-cctgtttctgacctcaatgggaatgcctccagtattgccccattaagtaATATTTATCCTGCTTTTCCAGTGACTTCCAACATAAACACTTTTTGATATTCATGGAG-------CCCCTCCTCCCTTACTGAGTCCATGACTTCTTTCTTTCTCTCCTTTCCTCATCATCCACCTTCAGTTTCATGCTCCATCTGTTTAAAAAAATATTCTTaaaaaaaaaaaaaaaaaaaaaa s canFam2.chr35 28934083 305 + 29542582 Gtcttttccaattcctatgcttgcaattgttttatctaattatattagttaaaacctccagtacaatgttaaatagaggtagacaatagtgggcatcttgtcctgttccccacctcagcaggaaagcctccaatatt---tcattacgtaggaATTAGCTTGCTTTTACAATGACATCCATCATAACCACTCTCTGGAAATGATCAAGACCATCTCTCTCCCTCTCATTCCATGTCCATGACCCCT-----------CTTTCTTTAACAG----------------ACCCCATCTGTTCAAAAATGTCCTCACAAATATCTTAAAAAAAAAAAAA a score=5449 s hg19.chr6_ssto_hap7 224407 198 + 4928567 acaaatttgtgaaccattttctacttttTGTGTTCaatgttcacagcagcactattgacaatagccaaaaggt--gcaaacaaccaaaatgcccatcgactgatgaat------------aaacaaaacatattatatatccatacaatggaatgttattcagccataaagagaaatactgaaacatatatatatgtactgaaatatatatt s canFam2.chr35 28934448 181 + 29542582 ACAAATTGGTGAAGCCTATCATG------GTGTT-aatattcacag-aacactattcacaattgccagaaggtttggaaacaaagcaaatgtccgtcaattcatgaatgcaacacaagtgaaacaacacgtggtgtttatccatattatagaatattatccagccatacaaagaaat-----------------------gaagtatcaatc a score=1970 s hg19.chr6_ssto_hap7 224915 47 + 4928567 catattacaatatgaatgaatctttaaaaaaatatgctaagtgatag s canFam2.chr35 28934629 47 + 29542582 catgctagaacaccgaggaaccttgaaaaaagtatggcaagtgaagg a score=5898 s hg19.chr6_ssto_hap7 225264 271 + 4928567 aagt--gaagaaaaaggctacgtactgtatgatttcaattatatctaatatctagaatagactaatccatagagccaggagttaggggtagaaggaaatgaggagtgattgcttaatag-tgtgaggtttccttttg-ggtggtaaaagtgttttagatccagacagtggttgataattta-caacactgtggatttactaaatgctactttgtgccagagttttacactttaaaatggtgaaatttaggttacgtatattttacaattaaaaaaa s canFam2.chr35 28934676 238 + 29542582 aagtcagatacaaaaggccacatgctgtaggactgtacttgta----------------ggcaaac-------gtggggagacaacagcagaaaggaagaatgactatgtatttaatggatacaaggtttccttttgaggtgataacagtattcaagacctgtacagttgt-gatgatcaaacaacactgtgagtttactaaatgctact--------gagtcaaacacttagaaatgatgaactt------atgtgaattttaTAATAACAAACC a score=2775 s hg19.chr6_ssto_hap7 225876 100 + 4928567 atcttgcaaaaccccaatcctggatgagactgaccatctgcttactcagtgcccacgccagagcagtcaagatttgagaaaGCAAAGCTGATAAGAAAGT s canFam2.chr35 28934932 99 + 29542582 ATCTCCTAAAGCCGTAATCCTGAATGC-ACCCACTACCTGCTTTCCCTATGACGTCAACAGAGCAGTGATGGTCTCAGAAGGCAGGATGGAAGACAACAT a score=774 s hg19.chr6_ssto_hap7 226293 210 + 4928567 CACAACAGGGCAGAATGGTTACACTATAAATAGATGTTCACTGACCAAATACTCCTACTAGTTCTCGCAAACCAACTGTCTTTCCCATACTCTGAAACAATCATTT-----CTTCCC------------------------------------------------------------------------ATACAACA--------------------------------------------------------------------------GAAGACTCTCTGACACTAATTCCTGGCATATGTACTTTAGTTCTCATTTCCACCTGCCTTCTCAGGAACCGCACATTGCTGATCAGTACA s canFam2.chr35 28935031 347 + 29542582 CACAGCAAGGCTGACTGG-----------GGCGACGTTCACCGACCAAGTGTTCCTCCAGTAGCTCACAAATCACCTGGTCTTCCCATACTCTAAAAGAGTATTTTCAAAACTTCCCCTTATTCTTTAAAGTGAGTGACTTTCCTGATTCCTGTTCTGCGGCCACAGATGACCCTGCTCTCCCACGTCAAGACAATAAAAGCTACCATGTTTTTGCTACCAAACCTCAACCTGCCTGCATCCCCACCTCCCCCCCACCCTCCTCTCTTCCCAAAGATCTTCCAAAACTACATCCT-ATACATGTGC-TTAGTCCCCTTTCCCTTCCATCTTTTCTGACACAG-ACATTAGTGATAAGTTCA a score=8014 s hg19.chr6_ssto_hap7 226828 379 + 4928567 TCTTGTGGCTTCAGTGTTCTCCCTCACCTAGAAACCTTACAACATATACTCCTTTCCATACGTATTTTGAAAATATGTCTAACTTCTAGTTTCTTTAACCAACCCTTCCAGATAAAACTCCATAATCCTGTCTCGTCTCTAAGTATTTTATTACAAccccttaacagttgtacttgaaatagtcatctacttgtgtagtctccattcacctgacctagtcactactcaactccccctaatgtggctcct-------gccccaattattccattgtgatagttctacctaagatcaccaatgatggtcatgttattgaatcaaatgggtatcagctttgatattatttgacctcaactgcat--tactatgctgtccactc--ccttcttG s canFam2.chr35 28935382 342 + 29542582 TTTTACAGCTTCAATGACTTTCCTCACCCAG-ATCCTTACAACAGACTCTCC-TCCCACATGATCTCTGACAATATGTTTAGTTT---GTTTCTTTAAGCATCCCTTCCC-ACAAAGTCCCACAATC----CCCACCTCTCCTTATGGTCTT---ACCCCTTAAC-------------CCAGACACCCATTCCTACAGTGGTCACACACCCTGCC-AGTCACC-----ACTGTCCCTAGGATGGTTCCTTAGGGAAGTGTTAAGTGTT-TACTGTGGCACTTCTCTCTGAGGGCATTAGCAATGCCCGTGGCTTTAAACCAAATGCGTGTCAGC---------------CCTTAACTGCATGAGACTCTGCTGTCCACTCCTCCTTCCTG a score=4924 s hg19.chr6_ssto_hap7 227597 93 + 4928567 aaaatgtaaaaaccatacttattgcccaggacatacaaaaacaggggatggaccataatttgCTGACCCTTGCCCTATGCCATCATCCATTTT s canFam2.chr35 28936430 89 + 29542582 aaactgtaaaaacca--cttagcctgaaggacatacaaaaacaggtggtgga--gtggtttgctgacctgtgCCCTATGCCATCATCCCTTTT a score=62785 s hg19.chr6_ssto_hap7 228047 1744 + 4928567 tatctgatcgccacactaaaatataa--ttcaggaaagcttatttggcacttaatcccagtgcctagaatagtgcctgacacaaagcaaataattaatacgcactgaatgagcaaaCGACAGACAGGCATTAGCTCATTTCCTGTAGTCTTGCCGGGGTAGGTCTGCTGCAGCTTTATCACCTGCTCTACCAAGGTTAAATCACAGG-ACTGCTCAGGTAACCTAACCACTCCTGCTCAAGTGCTCATTGTTTTGTGGCTATAGTAATACA----------Ttaaaactacaggatactggagtgagga---------gagtctttgaatgacatgtggtctaagcccctcattac----tgaacaaatgaggtcactgaggcccaaaaaggttgagagccttgcctgtaatcagaccacttgtcagtgctgtgtaggcacaagcaccaggtcttctTTTTGCCATTTCTATGAGACAACGCAATTGACTAATTCAAGTTGTGTGAACCAGAACTTCTAGTTTACACAGTTTCCTTCCAAGGTGCACAATATAGAGTTTGGCAAGCTCTTGCTATTCCTGCAGAGTTAA-----AAAGAAGACAGGGGGTCCTGGATACTACTTGGCAAAGGAGAAGGGACGATATTTTCAGTGGGTGCTGCTCTAGCAGGGC--------TCTGCAAGCCTTACCTGCAGGAGCTCCCTGGTGGGCTGCTGCTGCTTCTCTTCTAGCTGAGCGATCAGGCTGCTGAGGTGGGAGATGTTGCAAGAGAACTGGGTGATGGCACCATTGATGCTATTGTAGATGGCCAAGTCTAGCTCCTCAAGGCGGGCCAGGAGGCGATACTCATGCTCCTTTAAGGAGTGATACAGCTGCTCAAACTCCCAAACAATCTTCTCCCTCTCCATCTGGGTTAGGCTCTATGCAGACGACAGGGAAAGGCAGTAAAGAGAAAAACGGCTCATTTCTAGGG-CCTTCATAGTTCTCCTGTGACCATGTAGCCCAAGACCTCATTAT-----------GGATTAAAACAAGCACAGTGCTAACTCA---TTATTTCCAGTCTTTACTGACTGGATATATAATGCCCAGGAACTGAATTACCCCAGTgattattaagacatagtccctgttctcaagcaactcagagAAGTGAGTCAGGTTCATATGATATACATAGTCATGGATGGGTAATTAAAGATAGGGTGACAGCCTGCAATGAAAGAAACTGGTACCATCTTCACAGAAGCAATTT----CACACAATGTTCATGTGATGAACAAGAATTCACCACATAGGCAATGAGCGGGAAGCCTTTCCAGGCAGAAGAAATGGCACAGGCAAAAGAGTGGGGAGAGAAAGCAAATGGTGCTATCTGGCTGGAGCACATGAGTGTTGAGGGAAGGGACCAGAAAAGGTAAGGCCTTGTCATGCCTGGCCTGGGAGGCTGG---GGGTAAGGACTCTATCCCAACTGGGAAGCATGGAAGATTGTCACACAGGAAAGTGACAGGG-TCAGATATGTGCCCTATGG---AGGATGGAACAACCAATAACAGCTTCCTTGC-----CCAATTTCCCTGGGCCCTTCATATGTAATCCATACCCGCTGTCTGTCCTTCACGGGTGTTCACCAACTGCTGTCTCTAGCTTTGGGTAGGAGGGGGAGAGGTGCTCTCCCCACGATTCCCTCTTGGCGCTCATTTGTTTGCCATAATTTA-CTGTCCTTCGTTCTTCACCCAACCCCCACCACCAACAGGACTCTATTATAAACTTTTGTTCTAAACAAGGAGCCAg s canFam2.chr35 28936769 1674 + 29542582 TACCTGACTCTGACATTAGAATATACATTTCAGGACAGCTT-TTCACCACTTAATCCCAGTGCCCAGAATACTGCCGGACCCAGAAAAGACAATTCATATGCACTCAATGAACAA---------------CAGCACATTTCCTGTGGCCTTGCCAGGTTAGGTC-AATGCAGCTTTGTAAC----TACACCCAGCTTAAATCACAGGGACCGCTTGGG----CCAACCAC--CTGCTCCAGTGCTCA--GTTTTGTGGCTGTGCTAATGTACACATATATGTTAAAATTACAGGACATTTCACTGAGTATCTTTACTCAAATctttaaatggcatgtaggctgaacctcccattacaccaggagtagatcaggtcactgaggcccagagaggtcaagag-------tgtgatcagaccacgtgtgggtacaggacaggcctaggcattaggtcttcCTCTTGCCCTTCCCGTGAGACAATGCAACTGACCGATCCAAGTTGTGTCAACTGGAACTTCTGTTATGCATGTTTTCTCTCTGACAAGCCCAG---AGAGCTGAGCTAGGGCTTGTTACTCCT--AGAGTTGACCGGGGCGGGGAGGGGGAGGTGCTCCATACTGCCTAGCAAAGAGGGAAGGGAGAC-TTTTTGGCAGGAGCCACGTTGGTGGGACACTCCACACCTCCATGCCTTACCTGCAGGAGCTCCCTGGTGGGCTGCTGCTGCTTCTCTTCTAGCTGGGCAATCAGGCTACTCAAGTGGGAGATGTTGCAGGAGAACTGGGTGATGGCACCGTTGATGCTGTTGTAGATGGCCAAGTCTAGCTCCTCAAGGCGGGCCAGGAGGCGATACTCATGTTCCTTCAAGGAGTGATAGAGCTGCTCAAACTCCCAGACAATCTTCTCCCTCTCCATCTGGGTCAGGCTCTGCGTAGATGACAGGGGAGGGTACTGAAG-GACAGAAGGCTCCCTTCTAGAGCCCTTCATGTCTGTCCC-TGACTACCTACCCTGAGACCTCATCATCTTGTCCCGGCATGCTAAAACAAGCATCCTGTTCATTCACTCCTGGTCTCAGGCTTTACCGACTAG--ACACAATGGCTGAGAAGTGAGTTACCCCAGAAATAA--GGAATATAGTCAC--------------------AGGAGAGCCCGGTTCACATGACACATGCAACCACAGGTAG-----TGAGGACAGGATG---GCCTGCAGTGGGAGAAGCTGGTACAGCCTTCACAGAGGCAATGTAACACACACAGTGTGGTTG-GAGAAACAGGGGTTCACCATGTGGTCAAAGGGTAGACACGCTTTCCTGGCAGAAGAAACGAC---------------GGGAGAGATGGTGAACGATGGTGTCTGGC-AAAGCACCTAAGTTTTGAGGG-AGAAGCCAGAAGAGGTAAGAGA-GAACACACCTTGCCTGGAAGGCCAGGGTGGGGCAAGACTTTCCTGCAACTAGGAGCCGTGAA------------AGGGAAGTGACTGGGTTCAGATATATGCCATGTGGGGTGGACTAGGACACTCAATCCTCGCATCATGACTGCAACCACGTCACCAAGGCCCTTCCCGTGCGGCCCTCACCCCCTTTCTGGCCACCAGGGCTGTTCATCACCTACCCTCATTGGCTATGGGT------------------------GTGGTGCCCTTCTGGAA--CAGATGTTTGCCAAAACTAGTCTACCCTTCCTTCTCTATCTACCTCCCACTGCCAA---AACCC-----TGAGGCTCTCTGCTAAACAAAGTGTCAG a score=79598 s hg19.chr6_ssto_hap7 230236 2009 + 4928567 CCACTATTAGCAATTGTCTGCAGAATGGTACCAACGCAAGCTAACTGTATCCAATAATTTTACCTATCTCAGCTTTGCCAAGGATCAACCCTGGTCTACGCAGTT--AGCAGGTTAAAGTAAACTGACAGGTCTGATTTCCAAGGGTTCCAAACTTGGCTTCTCCATGCTTTCCCCAAAAGTAAGGGAATC--TTAGTTCTCCGGGTGAGTTCCCAC-TGCCATGTGCGGTTGATCCACCTCTACCTACAAGTTCTGGGTGACATG-CTGGACAAGTTTAAGGGAAGTAACATCAGCTCTACAGAAGAGGAGAGCACCAGCAGA------ACCAACTGTGAATTCCAACAACCCTTACCAAGAGTTCAGCTCGTGCCTGTTCCCCCTGGGCCCGACGTCTCTTCTTTAAATCTTTCACTCTTTTTAAATGGTCGAGCTGGTTCTGGATTTGCTCCTGAGAAAAGCA-AAACAGATGGGCAGTTCAAAATTAGGTAGACCTTAGCATCAGCATGGTAC---TTCTTATCACACATGGAGTCCACACACCTGATGCCAAGTCTCCAGTTGGCGCTTGTCCTTAGGCCACACTGCCACCCACAAGAGACTCAGGGCGCAGGGGCAAACAAGCCACTCCTTTGGCAATCTGTGTCTATCTTAGCAGCCTGTGGCTTCAACCACTCAGCTACCTCGTCAGGACTATTTGTGTCTATCTTAAACAA-TGAGTCATCTACCTGTCCCTGGTAGGATATTGCATGACTTAGCGGAACTGTGACTGGAGTAGGAGGCTTAGAACTATGTTGTATTGTAGCTCTTCCATATAGGTACACTGTGAAAGTGActta----------tttccctcatgtgtgaaatgggcaaacaccatcttcccaacctactcaagagt---------------tctcaccagagtgagtgaaataatatagctgaaaggtccataaatgttaagtgattgcacatg----aatgtaCTCATATTTAAACACGGACATAATTGTGTAC--GCATTCCTGAAGCCCTCAA-CGTACAGAAAATACACAGTATCATGGACTCCTTGAAGGTCACCTTACAACTGTTTTATATGTAATACTTTGTTTCCACGTTTCTGTTTAGCTGTGCCAG---------------TTCACAAAGGGCTCTGTGAGTCACATGATTCC-----ACAATATTCCTCATAACTGTGTTATCTCctgagtctcagagtggttaagtgacttactccagCAGCGAAAAGCTGTTCTTTTCTGTGAGTTTCTAGACCAGGACGGATTGCAGGAAAGTGCTGGGGAAATGCTTATAGACTAAGGAATGGGCATAAGTCAGTTA------------------------------ACGTCCAACTGCGTTTTGTCTGAGAGCCGATGGGAGTAAGAGTGTCTGCAGCTTGTCGATGTGTACGCGGTTTTATGCA----CTTCTTTTAAACTGTCAAA-----AGGATGTCTC--------CGTGTACAATGTGTCCGTGAGACAGGTAACATGGGGGTAAACA-----------GAGAAAAGAGAGTGGGGGTGGGGACACTCCTGCCTTCCTCGCCAGCTACAGGTTTTCCTCCAAATCTGAGTGCTGAGGCTCTGGAGCGGACAGAGAGGAAATGACGGCTGTGAACCACACGTCCGGCTCAGCCATTTTCTAGGCGGAAAAAAGGAAGCCCCTTTGGCTCTCTCCTCCCTTTGTCCGACTCGCGCTCC---CGCCCTCCCGGATCCGCGCCCTCACCTTGAAGCCCTCCACCGCCTCCTCGAGCGGCAGCACGCTGTGGCCGCGGTGCTCGCGGGAGCGGTCGCACACCACGCAGATGGGCATCTGGTCCTCCTCGCAGTACAGCTTCAGGGGCTCGCGGTGCTTCTCGCACACGCCCATCTCGCCGCCGGGCCCCGACGGCCGCTCGGTGCGCAGCTGCTTTACCAGTTGGGTCACGTTGGCCAGGTGCCGGTTGGGCCGCATGTGCCTCTGCGGGAAGGTCTCCCGGCACTGCGGGCACGACACGTTAGTCTCTGCCGTGCCCCAGCAGCGGGCGAGGCACGCGCAACAGATGTTATGGCCGCAGTCGAGCATCAT s canFam2.chr35 28939591 1968 + 29542582 CCACCATCACCATCTGTCTGCAGAATGGCACCAAGGAAAGCTAGCTGTGCCTAGGAATTTCACCCA---------------GGATCAACTCTGATCTATACAAGTCAAGCAGGTTAAACTT--TTGGTAGGTCAGATCCACAGGGGTGCCATCCTCAGCTCTTCCATCTCTCCCTCCAAAATGTGGGAATCCCTTGGCTCTCCAGGAGAGTTCCCAAATGCCACCCAGGGCTGTGTCACCCACACCTA--GGTTCTGAGTAACCTGACTGGATACAGTTAAG-----TGACTTCAGACTTACAGAGGACAGAGCCACCAACAAACATGATAGTACCTGTGAATTCCCAGGACTCTTACCAGAAGTTCGGCTCGTGCCTGCTCCCCCTGTGCCCGCCGCCTCTTCTTTAAATCCTTGACTCTTTTCAGGTGGTCCAGCTGGTTCTGGATTTGCTCCTGAGAAAAGCAGAAACAGCTGCACGGTTCAGGATTAGG--GACCTCGGCATCGGCATGGCCCACGTGCTTACCACGCACACAACCCACACTCCTGAGGCCAAGTCCCTGGTGAGCACCTGCCCCTGGACCACACTGCCATTCCCA----------GGGACAGGG--------------------------------TATTACAGTACCC-----------CTGCTCAGCT------------------GTGTTTATCTTAAACCGCTGGGTCACCTGCCCGTCCCTGGAAAGATACTGCATGGCTTGGTGGAAAGGTGAGTAGATGAGGAAGCTCAGAGTTAAGGTGTGGC-TGGCTCT-CCATGGAAGTATACCAAGAAAATGACTGAAGTTCTCTCGTTTTCTTGATGTGTGACCTGCACAAATACCACCTTCCCAAGCTACTGGAGTGTGAGTGAACTCCAGTACACTGCCAGTATGAGTGAAATAATATATCTGAAAGTACCACAAGTGTGAAGTGACTACTTATGCACAGATGTACTCACGTTTCAACA--GACCTAACTCTGCACCTGTCCTTCTGCAGCCTGCAAGCACACAGAAC-CGCGCCGCACGCTAG-CTCCTCCAATGTAG--TTACAACTGTTGGAGTCG--ATACTTTGTTTCCATGTCACTGTTT----GTGCCAGGCTGTTGACTCTGTGTTCACAAAGGGCT-----ACCCACTCATTTCTTTTGTCTGAGCTTCCTGGTAGGTGTGCTGTCT----------AGAGTCG--GGGCGGCTGACCTGGGCAGTG----------------CGCGAGCTTCCAGGGCAGGACGGAGCACAGGGAAGTGCTGGG-AAATGCCTGCAGGCTGCGCGCTGGGCACCTGCCAGTGGTGCACACAGCCCGGGGTACCTGCTGCTGGTGCGCCCAGTTTGAGCTCATCCGAGATCCGACCGGAGCGTGAGCGT---------GTCCGTGTGCGCGCGCTTTTGGGCATATCCTTCTTCCAGTCAGGCAGGGACGGAGGGTGTCTCTCTCgggccgtgggccgtggg-ccgtgggccCGGGGGC----GGGTAAACACAGGGGCCCCCGGGAAGGGCGGGTGGGGGCGGGGAGGCTCCGGC-TCCCTCAGCAGCTACAGGTTCTCG--CAAACCCGCGCGCCGAGGCTCCG---CGTAGAGAAAGGAAATGACGGCTGCAAAGCACGCGTCCGGCTCAGCCATTTTCTAGGTGGAGAGGAGGCAGCCTCTCGGCCTCTGCTC---CTTTGTCCG-CTcgcgccccgcccgcccgcccgggcgcg-gcccTTACCTTGAAGCCCTCCACCGCCTCCTCGAGCGGCAGCACGCTGTGGCCGCGGTGCTCCCGGGAGCGGTCGCACACCACGCAGATGGGCATCTGGTCCTCCTCGCAGTACAGCTTCAGCGGCTCGCGGTGCTTCTCGCACACGCCCATCTCGCCCCCGGGCCCCGACGGCCGCTCGGTGCGCAGCTGCTTCACCAGCTGGGTCACGTTGGCCAGGTGCCGGTTGGGCCGCATGTGGCGCTGCGGGAAGGTCTCCCGGCACTGCGGGCACGACACGTTGGTCTCCGCCGCGCCCCAGCAGCGGGCCAGAAACGCGCAACAGATG-TGTGGCCGCAGTCGAGCATCAT a score=2821 s hg19.chr6_ssto_hap7 232245 46 + 4928567 GGGCTCTGCGAAGTACTGCAGGCACACGGGGCAGGTGGTCTCCTGC s canFam2.chrX 75032341 46 - 126883977 GGGGTTGGCAAAGTACTGCAGACACATTGGGCAGGTAGACTTCTGC a score=8348 s hg19.chr6_ssto_hap7 232331 630 + 4928567 CCTGCGGGGGCGCACGGGCATGGGCCCCGGCGCCGAGCTCCGCACTGAGCCCAACTCTCCGGCGCTCTCTCCGGTTCGCTGTTCCTGAGAGGCACCGGGCGGACGGAGGGCGGCGCCTCCCGGGCCCGTATCCCAGACGCGCCCGCGCACCGAAGGCTTGGAGTGG--------CCGGGCCGATGCCTGCGCCTGTGCCCC-CTAAGCGAGAGCGGGAATACGGCCGGCTCACCGAGGCTCGCGGCCACGCTAGTGGGGCAGGAAAGGGTAGCCGAGGGTCAGAGTCCCAGGGCCAGGCGGGCAAAGCGCGCAAGACAACGTGGCCGCGTCCGAGCGGATGCCGGCGGCAGCGTAAACCCCACCCCAGCGCGAGCGGAAGAGGCGGCTCGCGGGGGCGGGGCTTGGCTCGCGCTTCCAGCGAGTGACAAGATTTCGTGGCCTGGGGGC---CTGAGCTGTTTCCTCTTGGAAAGGCCGAGGAGGCTCCGCCACTCTCCTTTGGACTGGTCGCGCTGAAGCTCTATCCTAGGGCACTGGTCGCAAGAGCAGATGGTGCCACACG-CTCCGGGCCTACAAACTTCAGCGGCTGCCGGGCCCGGGCCCCTCGTCTTTTGTTGGGTTTCCTCTTGGTGC-CAGGTCTC s canFam2.chr35 28941690 531 + 29542582 NCCGCGGGGGCGCAAGGGCAT-GGCCCAGGCGCCG-GCTCTCCG--GGATCCAGCTCACCGG-GCGCCCTCCCGCTCGCGGCTTCAgggcggcg-cgggc-------aggcggcccctccc-gcccggggtccccaacgcgcacggccccc---------gcgcggcccTCCCTCCCAGTCCCTCCGTGCGTCGCGGCCCCGCCCAGCG-GCCCTGGGGTCCTGCGGCCCCGCGGAGCCCCG-GGATGCGCGACTgggcc-----------gccgaggg--------ccgccgccggccggac---gcgcgcAGGACAACGTGGCGGCGTCCGAGCGGAT-----------------------CCCGGCGCGAGCGGAAggggcggcc--cgggggcggggcttggc-cgggcctcccgcg-gtg-cgggccgcggccccccgggtgcgctccgag------gctcggggagcgcctggggaggcccgcgcgcgggccgcgggcctgggggcgcgg-----------cggggcccgg-----------agac----ccccgcgtccccgcgccgA------GCGGTCGCGGCCTGGCCTGCACCCCCGGGCCTTTGTGGGTGCCCAGCTCTGCGCGCAGGCCTC a score=5532 s hg19.chr6_ssto_hap7 233346 548 + 4928567 CCCAAGAGGCTGGAGGATGAGGAGGGTCACCGACTGAGCCCACCTGATAAGTGAGGCCTTTTATTAAACAGCCCCATTTGTAGGCACTTGCAGTTTTGTTT--AGAAAAAGAAAGGTTTAATTATCAGATGGTAACATTTCTGTGTGTCAATA-----------------ACaagcccagttctgctacctctcacttgtgcccaagcaagttggtttaccattcatttacctcagtttctcctcgtgtgaaatggggatgataattgtaccGC--AGTAAGAAGTAGATTTCGTTACATCTTTTActttttgaaccataagattgtttatccattaaaatggtattaaaatgcccactacgtagggttgttgtATTGAGTAGCAACTA--AAAATTGCTTGCTCCTTTCTGAA--GTATAGAGAAACTAAGAATCCTGCGGTGACCCAGGGTCTTGGAGTCCCACAATACTCATTGTCTTATCATCCAGTAGACCT-CCAGCATTTTTATGTTGCTTTCTTATCCCTTACTTGGTGTTTCCTAGTTTTCTTTGAGATTTTCTCAATATTGTCT s canFam2.chr35 28942267 490 + 29542582 CCAGGGAGGCCGGAGGGTGGGA------------CGAGCCCAAC--------GGGCCGCTCCAGCGAACGGCCCCGCTCGCTGGCGCTCGCCATTGTGTTTCCAAAGAGAAAAAGCCTTAATTATCTGAAGGCAGCATCTGTGTAAGGCGGAAGGAGGGGAAGGAGGCCGAGGAGCCCAGCGCGGCCTCTTCCCGC-TGCCCTGGAACCACGTGCTTCCCCACCC--CAGCTCTGGCTTCCCCTTCGGAGAAACAGGG-TGGTCTTTGCACCCTCAACGAGGAGGGAGGCTTCATCCCGTCTTGTAAGGTTTTGACCATAGG--TGTTCGTCCGTTAACACAG----AGCACGCCCAATGCGCGGGGCC------TTGAACGGGACCTAGCGCGCGCGCGTGCTCCTTCCTGCAGGGCCCAGAGCACC-----ATCCCGC--CGCCCCAGGCCCTCGCAGT-----------------------AGCCAGCGCACTGACCAG------------------TCGTCCCTACCTTGCCACTTCCTGGTCTCCTTTGCTGGTTCCTCAGAATCGTCC a score=6732 s hg19.chr6_ssto_hap7 235127 358 + 4928567 TCATCATCCAGATTTCATGGAAT---------TTTGATTTGCTTAATTT----------ACCTGTTCATGTTAATTTCTATTACTA-ATCCTAACCTATATTATTGCACCAGTGTGTCAGTTTACAA--GTATTTTTCAAAGAATCGGTAACCGTGC----AGCCTTCCCATTAATTTCTCTAT------TTGTACTTTTTCACTGATTCAAATACCACCTC-AAGGAATAGAATCATCCTTA-AAAATTCTTAAAGAAGAAAATGCT--TTTCATTCTGTCGCTTCTTACTCAGACATCTTCAAAGTTTTGTGGGTTTTTTGTTGTTGTTGTTTATTTGTTTGTGTTTGCCTCTGGGACATTGTCCAAATTCTTTAGTATAAAGGCCTAATAA s canFam2.chr35 28942757 353 + 29542582 TCATCCTCGGGATTTCACTGAGTGCAGACAGCCTTGCCTTGCTTTATTTTTCAACGTGCCTCTGTTTTCTTTCATTTCCATGATGACACCTTGGCCGAAATCATTTCAACATTGT--CAGCTTGCAGTTGTTTTTTTAGATGAGTTAGTAGCCGGGTGACAAGCATTTCCACGAATTTCCCAATGGCAAGTCTTTCTCTCTAACGTCCTTAGAGAACACCTCCAAAGGTGAGCATCATCCTTAGAAAACTCT--------GAAATGCTCCTTTCATTCTCTCCCTTCTCACTCACAAATCTTCAAAGCTTCCT-------------------------------TTTCTGCCTCCACGACATTGTCCAAACCCTTGAGCTTGGGGCTCTGGTGA a score=5647 s hg19.chr6_ssto_hap7 236415 136 + 4928567 TATACCGTTTTAAAATGAATTT-CCTCCTGCCTCCTCTAAACCTCCctgccctaagggaacgagtgacttttactagtattggccaaatccaagggacacttttcagtcttcatcttaacatctcgaaggcatttta s canFam2.chr35 28946292 137 + 29542582 TATTTTATTTTAAAATTATCCTACCTACTCCTTTTACTCAATCTAGCTACCCTaagggtaccagtaatttctactagtattagctaaatccagaggatgctcttcagtctttatcctgatggtttttaggcacttaa a score=5205 s hg19.chr6_ssto_hap7 236985 248 + 4928567 cactgttgatccctccctccttggatcattcttcttcCAAGCAGCAAACTGAGTGGGACCTGATGAGGCCTAAAGTATTTCTGCTTCTTCTATCTCCTTCTCTCTTATCTGTCTTTTACCAACTGATACTAACCTTAGTCTGGAAAAATAAAAAATTATCATAATAAATACAAGAATACAGTACTTAAGAAGCCAACGTATTAGATGAGACAGAATGGGAAATGGAGAAAAAGACAAAATATCAATAA s canFam2.chr35 28946429 165 + 29542582 cactgttgagccctccctccttGGATCATTCATCCTCAGGTCACTAAGGTGAGTAGGACTTGGTGAGGCCTAAGGTATAGCTGCTTCCTGTAGCTCCTCTTCTCT------GCCTCTACCATGTGAT-----------------------------------------------------------------------------GTGGGACAGAATAGAAGCTGAGGACTAGGCCCAAATCTGAATAG a score=2698 s hg19.chr6_ssto_hap7 237554 38 + 4928567 GAATTTAGTACAAGATACAGGAGAAATTGCAGGTTGGT s canFam2.chr35 28946594 38 + 29542582 GAATTTAGTCCAAGACAAAAGAGAAATTTCAGGTTGGT a score=2651 s hg19.chr6_ssto_hap7 237653 42 + 4928567 CATCTCACTTCTTATACTGAACTATATTATTGATCAATGAAA s canFam2.chr35 28947106 42 + 29542582 CATCTTACTTCTTATACCAAAATATATTTCAGATCGATGAAA a score=16318 s hg19.chr6_ssto_hap7 237712 484 + 4928567 ATCCATAAAAATTC-----CAGGAAA---------AAGAAAACTGATTGATTTTTTTTAAGGCACTTGTCATCT---GGAAGATCTTTCTAAACATGACCCCA----CAGAAGTCACAAATGGATAAATTTGGTTACACAGAATTCAAAATTAGATGTCTTCT-TATAAAAAAAT-TTTCTAAACAGCTGAATGATAAAGGAAAATTGGGGAAAGATGTTTTTAGCAAAT-TAAACAAAGGATGAATTTCCTT--GAGACAAAATATTTGCACAAATAaaagcaaaaaaagagagaagaaaaatgagcaaaggtcatgaacagatggtacagagaaaaagaacaaatggtcaataaacatgtgaaaagagg------------------------------tgatgt--taattttaatttatgagattagcaaagatttaaaactttgacagtattcagtattaatgagaatatgaggaattccagtacactgtg----------agaatgtaaattgggagaacaccattgaaagcaatttgacaattgg s canFam2.chr35 28947983 521 + 29542582 ATTTTTAAAATTTCTTTTATAGAAAAGCCCTTTTTAAAAAAACTGGTTGATTTTTTTTTTAA-----GTTATCTAGAGGAAGGTCTTTCTAAACATAACCACAAACTCAGAAACCACACGTGGATACACTTGATTGCATAAAATTAAAAAGCAAATGACTTCTATACAGAAAAGTACCTTTAAACAGTCGAACAATAAAGGAAAATTAGGAAAAG-TATTTTTTGCAAATACACACAATGGATAAATTTCCTTGAGAGACAAAATACTTTCAGAAATATAACTAAAATGCAGAGGAAGTAAGA----CATAG---------------------Gaaaaagaacagttggttcataaacatgtgaaaagaagttcaactcactcattgttcatggaataaaataatgtgatgcttgtaatttatgagattagtgaagattacaaagctcggcaatactcggtattggtgagaatgtgaggaaagtcagcccttggtgtgctggggaatgaatataagttgggagaacattgctgagaataatttggtgatagc a score=9608 s hg19.chr6_ssto_hap7 238522 205 + 4928567 aaaaaatttaaatgcactcactcttagaaccttctactctgcttctctcccatctggacagagatgtttgattatacaaggattgccattacagcattgtttggatttgtaaaatactgggaccaacgtcaatatgctccaacaggggataagttaatgaaaatattatgcaggtgtacaatgaaatgctatgcagtttccaaaa s canFam2.chr35 28948508 202 + 29542582 aagtaattttaatgcac-aaatgtttgaatcatccactccacttctctctcatgtaaacaaagttgattgattatttaaggattgcaattagggcattgtttgggtttgtaaaatactggaactaacagaagcatgcttc--caggggacaggttgttgaaaatactgtgtgggcatgccatggaatagtatgtcagtaccaaaa a score=15743 s hg19.chr6_ssto_hap7 238834 367 + 4928567 gagaagaagaaaaagaagaaATAATCTAATAGGGAAAGGTGTCTGAGATTTATTTACTCattaatttattcaacaaatgtttgttgagtgtcaactatgtgccag----tcttctagattccaggacactgtgtggaacaaaacagacaaggttgctggggtcatggaattactttctagagggaaagttggatgataagcaaaccaagcaataaacacatggtatgaaacatgccataaagtggaatgaatcagaatatggaagatgaagagtga-tggttattactttatattgggtcatcagggtggaatctctctgatgaggtagcCAAACAGCTGCTGCAGTTTAGAGTCTCAAATTTGCATGTCAC s canFam2.chr35 28948710 359 + 29542582 ggaatgagtcaaatctatacata--ctaatatggaaagatgtctgagaGCTTTTCATTGattca-ttattcagcaagtgtttgttgactgtccagtatatgctagcctctcttctaaactccaggatatggcagggaacaaaacag---aggt--ctggacacgtggagttgctttctagagggaaagatggacgataagcaaatcaagaaatagatggatagtatgagagatgccatga---gaaatgaatcccattgtggaaagtggaaagtgattgggtgttactgtata-tgggcctccaggg-gaggtttctctgatgaggtCGCCAAATGGCTGCTGGGGTTTTGACTCTCAAATGTATATGTCAt a score=9710 s hg19.chr6_ssto_hap7 240872 230 + 4928567 TCTGACCCCTTCTTTCAAACAGCAAGGGGTTGAGG-ATTTCCTTGATTTTAACACAGGCATTTTGAATATGAGCAGACCATGCCTggtaaacacactagacaagattcctgcccttatggagctgacaggccactgggggCTGGATGGAGGCCGAGATGGTAGCTGTCTCCAAGATAGTCACTATCTTAGAGACCTCTCATATGCACATG---ACATTGGATCACCAAGATATG s canFam2.chr35 28953515 220 + 29542582 tCTGACCTGTCCTTTTAAACAGCAAGGGTTTGGGGGATTTTGTTGA-----ATAcaggcactttga-tatgagcagagggtgtctggtaaacacactagacaagatccctgcccttggggagctcaccagc-actgggggCTGGGTGGGGGC--GAGTGGAAGCTGCCTCCACGGTGCTCACCATC-----GGCTTCTTTCCTCCCCATTGGCACACTGTGCcatcaggacatg a score=14475 s hg19.chr6_ssto_hap7 241585 479 + 4928567 GggtgcagcccactcctccagccccttgaatctggtgggctggcctatgagtactgtgactaacactgtatggcagaagtgattctataccagtgccaggccagggctgtaagagggctgacagcccctgtcttgtgtctctgagtcctgAGACACCATAGA-TATGTCTTtattagtctcctcaggctggcatacaaaatactaga-----tggcttaaaaaacgggaatttatttgctcacattttattttctggatactggaagtccaagatcaaagt--ctgcagggttggtttctcctgaggtctctctccttggctcgcaggcagccgccttctgactatgtcctca-catgaccttttctctgtgcgcatgcacctctgatgtctcttcttcttcttataaggacaccagtattatcagcttagggcctcactcttatgacatcatttatccttaattgtcatccctataaagatcctatc s canFam2.chr35 28953735 435 + 29542582 gggt--------ttcctctacccccttgaatctgg---gctggcctgcaaatagc-tgatcaacagagtacagcagaa---attc---agctgtgcttggcccagcctgggtgag-----aaagaccctgccttg-gtctcttagtcctcagccaccagggaagatgtctt----agtgtgcttggtttgccata-acaataccagaccgggtggcttacaca-cagagatttattttctca-agtttattttctggaaactggaagtcctggatcagagtgtcagcagacttggcttctcctgaggcctctgtccttagcatgcaggtggccactccct--ctgggtccttggtatggccttttctttgtgcacattcactcccagtagctcttcctcttcttctcaggacatcagtcccatt-gtatgaggccccctccttatgacctcatttaactttaat-------------------ctacc a score=18747 s hg19.chr6_ssto_hap7 242373 654 + 4928567 agtcacattgggggttaaaattccaaaacatgagttgggagCTGTGTGTATGTGGTGGGCAGAGTGGACACAACTCAGTCCATAGTGATGTCCACCTACTCTACTACGGGACTCCATAAGGGGGGAGTGAGCTCA-Ttgaggccatccttccagccattccctgagaaaagcatgaggattttcagtgaagagcagcccaactaccaaatggatacattctgagttgccagttaatgccaggtgttacagaa---aaatcatcccagtgagccctacctgTTGGGGCAGTTTGTTATGCAGTATGAAATAATCAGAATAAGGAGTTGCATTCAGTTATTAATCAAATCAATATGTGGTTACTAATTGTGACAACTTCTATGATGGAAGAGACAGGATGCTATGAGAAAGAATAACACAGTGGGTGGGAATGGCATCACAAACTGCAAGGgagaaataattgaaggacctagag-atgttgggcctgaagaagaTTTCAATGCTTTTGTGAGCTCTGGAACCATTTCTCTTCCCTTTCTGGGCTAAACTCCTTGAATAAGCGGATCCCTCCGCTTTCCTTGCAGGTGACC-ACTCCCTCCAGATCAGCCTCTCATAAAACTTTTCTCGTCTTCCCAGGTCACAACAATTTTTCCCTTTTTA s canFam2.chr35 28954170 562 + 29542582 agtcacactgggggttagagctttagcatacgaacttg------------------------agaaggcacgattcagtctataacaacatttgactactctACCATGGGACTCTAAAGAGGGGACAAGGGCTCAGCTGAGCCCATGTGTCTAGCCATTCCCTGACAAAGGCTTTAG----CTGAATGAAGAGCTACCCAACTGCCGCACAGCTGCATTCTGA----CAGGTTGATGCCCG----TGCAGAAGCGAAGTCACCCCGATGAGCCCTGATT-TGGGTGTACTTTGTTACCTGGGATGAAATAATTATAATAAGGAGCAACATTAGGTAATCCGGCGAATCAGTATGT-------AATTGTGACCATC-------------------------AGGAGTAGGAGTGACACTCTGGATGGAAA-------------------GAAGAAATCATCCAAGGACCCGGAATGCACTGGGCCTGAAGG---TTACACCACCGTTTTGAGCTCCGGGACTGTTTCTCTTTTGTTTCTGTGCTGAACT---TGAATAAGCAGTTGCCCCTGCTCTCCTAGCAGTTGACCTGCTTCCTCAGATTCAGCCTCTCAAAAACCTTT----ATCTTCCCAAGATACAACAATTCCTCTCTTCTTG a score=13114 s hg19.chr6_ssto_hap7 243973 314 + 4928567 AACATTTTTAGAGTTTATGCTGTAGAGCATTTAATTGACATTAAATGATAAACTGTTTCATATTGTTAAtttattgaggtaaaatatacataaagggaacaagccttcagtgtataagctaa-tgaattgttacatgtgtgtacccaccatccagatcaagaggaaaaatattttcagcatccaggaaggctgtctcatg-tctctttccatcagtatccactcccagaggttacttagaaaaaatcactattccaaatttctagaagcattgattaattctgcctgttcttgaacttcatatgaagagactccta s canFam2.chr35 28954733 301 + 29542582 AACATCTTCAGAACTTATACTGTGGAGCATCTAATTGACCCTGAGTAAGAAACTATCTTATACtg-taattt-------tgaaatacacatgaagtgtacaacttctcaatgtatagtgtaattgaactgttac--gtgtgtagtcatcattcagatcataatgaagaatattttcaggatcccag-aggctcccttatgctccccctccatcaatacccacccccaagagttattcaaaggaaaccactgttctaaatttccagacac----attaatttcacctgttcttgaactcgtattaaatggaatcata a score=4210 s hg19.chr6_ssto_hap7 244509 132 + 4928567 acatattacaccaacacttggtacagcatatgtgttttaaaatattttagctgttcaggtggatttgtagtggtatctcattgtggttttaatttatatttccctgctaattaatgatactgagcacatttt s canFam2.chr35 28955755 121 + 29542582 acttttcacaccaatatttggtgagttaaatatat------atatactggccatctgagtagatttgtaatggtaactcattgtgattttgattttaat----ctgataaat-atgatattgaatatctttt a score=8548 s hg19.chr6_ssto_hap7 244922 175 + 4928567 tcatatgtgtact----atttgaatgtagtctttagggaagttcctgatcaagtcttttg-tcattaaaaaa-aaattatttgtctttttcttgttgatttacaagagtgctttatatatttaggatgagtcctttctcaggtatgtattttgcaaatgt-tccctgcaatttgtggcttcc s canFam2.chr35 28955876 182 + 29542582 tcacatggttcctgagcattagaatggccttgttagtgaagtgcctgatgaagtctttagcccattaaaaaataaggtatttgtctttttcttgttgatttgaagtcatgctttatatatttagaatgagtcctttgtcagatatgtatattgcaaatatattctcccagcttatggcttcc a score=3466 s hg19.chr6_ssto_hap7 245411 72 + 4928567 ttttcattttcttaatgatgttttttgatgaatagaagtttccagttttgatgaattttatttcatcgactt s canFam2.chr35 28956058 68 + 29542582 cttttaactttttaattat-ctttttgatgagt---agttttcagttttgatgaattccactttatcaactt a score=7328 s hg19.chr6_ssto_hap7 245681 135 + 4928567 ACTTTTTTTttttttcattttggttactctttcctgtttttgaaatctttgcgtaccttacattcattaacatatcctctttctagaagctttactttccctgtcatacttaggtgtatggtccattatgaattc s canFam2.chr35 28956126 124 + 29542582 acttctt----------ttttggttactattg-ctgtttttgaaacctttgcctacctggagttcattaagatattcttcttctagaagctttactttccctttcatatttaggtgtatgacccatttttaattc a score=4543 s hg19.chr6_ssto_hap7 245816 85 + 4928567 atttttgtgttt-----ggtgtgaggcaaaggtctagatttagtttttttcctaattggtcca----gcaccttttattgaaaagTTATATCAT s canFam2.chr35 28956683 94 + 29542582 atttttgttatttaacaagtgtgagataggaatctagatttagttttttccccagatggtccatccagcaccatttattgaaaagCTGTATCAT a score=5141 s hg19.chr6_ssto_hap7 245901 103 + 4928567 AAATTTGTAAATGCATTTCTGTCTATTCACCTCGTTTTAACCACTATGTCCA-AAAAGCAGAAAATAGCTGCACTAATGGAAAACCAGTTCACCAGATTTACTT s canFam2.chr35 28956989 103 + 29542582 CAATTTTCAAATGCATATATGTCTCATCACTTCCTTTTAGCT-CTGTGTCCCTAAAAGCAGAAGGTAGATACAGTCATGGAAAACCAGTTCACCAAATTTGCTT a score=14634 s hg19.chr6_ssto_hap7 246584 374 + 4928567 GTTCTTTTTAACTAATTATAACATTTACAGCAACTCATAT--GTTGAAGCGGTTTTAACAGCTTTAAAAGGTTTCTGTGGGATTATCATTGACCTGT----TTTTACTTTGTCTTAGTGATAGCTTTGTAGGAAAGATT-AATTTTTCCTTAGCCCAGCAGAGAGAGGTGAGACTGATGGACATAAAAAGAAAATACTCAAGAAAATATATTAATCAATAGTGTATTTTATTATTAGAATACATCCATAAGAATCCTTTATATTTATGCCTACACTCTTCATGAATCTCTTCTTGTGGACATATTTATTTACTTATACATTTCTTAATTCAACATATATTTATTGAATACATTTTTGAATATGGCAATATACATTCATATT s canFam2.chr35 28957092 343 + 29542582 GtatattttaattaattataaaatttacattaattCATATATGTTGGGGTGGTTTTGGCAGCTTTTAAAGATTTCTGTGAGGTTCTAATGGACCATTAAGATTATTATTTGTCTTCATGATGGCATTTTAGGGAAGATTTAATTTGTCCTTAGCTAAGCAAAG----GACAGATTGAGAGACATAAAAAGAATATATTCATGAAAGTTTATT----------------TATTATAAGAATATATCCCTAAGAATCCTTTATATTTGGGCATAGGTTCTTCATGGACAGCTTTTTGTTGATATATTTATTTACTCAGTTATTCGTGAATTCAACAAA----TACTGAATAAATTCTCAAATA--------------CATATT a score=4044 s hg19.chr6_ssto_hap7 247260 507 + 4928567 TAATTTTTAGTTAAATTAAtaaattaatatttatggttttcatcattatgactttgtaatatttttcacagctgagctccatggtataccataattacctt------ctttgacaaccttttgttcttcctgggattaataattgcctcctg-ttctttgcttacttttctaaatatttattcctaattcaataccagctttctgacactattttctcgtcaaatgcatgaggcagtatgtcagttccattttcccccattggaaacaaccctcgtttagccctcttttttctattccaccgtagactgattgccttctagcctggtagctcagcagttgccccggagttttttcctttacctttctcctgtgttaggtccccagtcaccggatttcatat-ttcctttttcttagtttaattccctagttagtggacaattctccagaagctttctgagaaaaggtacttgggagataatgttctgcaaatgtccattcacatttgattgatag s canFam2.chr35 28957435 379 + 29542582 TCATTTTTAGTTAAATCAGT--GTTGA--------GTTCTCGTCATTATGACTTCCTACTATTTTCCTAA---------TACGATACACCATCATTACTTTTCCTGCCTTTGACAGCCTTTGCTCCTGCAGCAGACC--TACCTGCTTCCTGTTTCTCTGCCGGCTCTTCCCTGCGCTGAATCCTGAGCCGGCAACCGCTTGCTG------------------ATGTCTGTGGTCGCGGGGC---------------------------CCCGCGTCT-GCCCCCT----------------------------CCTCACGCC-----------------CCCTGGAA-------------CTCGTCCCTGCGGCGGGTCCCCTAGTCCCGG-TTTCACATCTTCCGCTTTCTCCCTGGAATTCCCGTTCTGCGGAACGATGCCTCAGAAGCCTCCAGGGAGAAGG-ACTTGGGAA-------CCTG--GGCGCCCGCGCGCACTTGGCTGGCGG a score=7488 s hg19.chr6_ssto_hap7 247898 361 + 4928567 tcataatcctttctgtgcaatcttttagttttgttttccttctggaaacatttaggatattcactttattc------gtctgatatttcacaatgacaagctttattgtgggg----ctttgccacaccctatgcagggtagttggtgggcct-tttaaatctggagacttaaggtctttggttctgaaaaataatcttatattacatctttatctcctttattccactttctcc---tcttttcctagaatccctgttagtttgttggcatatcttctattatacaccattttattttcttatcaattctttgctattttccatcattcaccccaaactttcc---agatttctacaaccttattttgaaattttag s canFam2.chr35 28957916 359 + 29542582 TCCCAGCCCTTGAGATGCCGCCTT----Tcctgtttcctctctggaagcttgcaggatcctcccttcatcccccaggtcctgccctttctcgatg---cgcttcagtgcggggcatccttctccgc-caccgcgc-gggccgtgagtggacccgcgttcacctgcagctgggggggctccggttctgcaaaacgagcctgtgtcgcgtcctgctctcct---tttcatgttctccttgtctcttcctggaaaccccggtgttttgatggcataccttttaccaaatacc-ttttattttcttctggactgtcccctgctttcca-CATCCACCCCACACTTGGCAGGAGATGGCCGCAACCGTATTTAGGG-----AG a score=9631 s hg19.chr6_ssto_hap7 248553 286 + 4928567 tttttaaaaatccagccatcataatattattaataattttaagaactcccct--cctttttgtttcatgagtgcagtatcttctcttactttcccgagga-ttaattataatttttaaaaaatccaacttcctgcattgtatttgtttcctcttaggttcttcctgcccccttctgtttgtattcgtccttgtcttattgtagaaatattttcacaaccacctgattatccttggttgtcgtacatattttaagtaaggcactaaacacctgattctggaagctctgtg s canFam2.chr35 28958275 275 + 29542582 TCTTAAAAATCTCTGCCACCATAATAT------TAATTTTAAGACTTCCCCttctcttcttgtgtcgcgaacaccctatctcctcttacctcactgaggacttgattctaattttctaaaaatccagtttcccgc-ttgggtttgtttcgcttta-gctcttctt-ccacctcctgttagttttcgtctttatcc-----tggaaatattttcacaaacctccaacgatttttgtgtgtcGTCCCTGCTTGAAACAAGGACCCGCAGACCGGCCCGTGGGAGGTGTGCG a score=1992 s hg19.chr6_ssto_hap7 249680 65 + 4928567 ACGCTGGTTACGCATTCATTACAATCGAAGATTATATTAATTTGCGATGGTAAGTGTTCCAGGTg s canFam2.chr35 28959049 63 + 29542582 ATACCGGCTGCTCATTTATAACAACGGAAGATTATATCCATGTGGG--GCCCGGGTTTCCGGGTg a score=53069 s hg19.chr6_ssto_hap7 250482 1661 + 4928567 GATGGGAGGGGTAGGGCTCACACACTGTTTCCACCGCGCCTTTCTCCCAGATTTCTTTCCATCCTTCGGGGCAGGG-CAGTATACTGATCTGGGAATATGGTTATTCCTGGAGATTTTTATTT-TCTTTCGTTTCCAGCCCACGAAAAGGTGAATTGAATTTTAGTCTCACGGTTTGAAAGGGAGAAAAGAGAGAAAAGAAAAAATATACTATCTACTTTCTACAGTCTTATTTATTCATTGTACGATACCTACAGATGCCTCTAGAACAACCTCCGAGTATCTTGGCACTGCCC--CTCAGTTGTAACCATGGGCTTAAATTTTTAAAAtctgtctcccgcattcctccaaaatgccttaagtgcagggctgagtctcagtagtctttgatagcccacggtctgctactttgtagaagctcaaccaatgcttgttgCatgaatgcataaatgaaaggatgagtgaatgaatgaatgaatgaatgaatgaatACTCAGTGGGACAGCCCAGC-TTAGACTTTTGGGAGACTTTAGACTTCTTTTTTGCCTTCACTTGCTAGGCTAAATTTTACAAGTTCAAAAGGGAATAAT----TATTTCTCCTCCTCCTCCTATCTTCTTTTG-CCTTTCCAGGTCCCAGCTCCCAGGTGGACATCTTAGCGTCCAGATGACCCAACATATAGGTGTCCTTTAGTATGGATGACCAAACTAGGATGTTATAGTGCTGGATGTAGTAATTCATTTTTT--CAAATCTTAACTTTATTAAGATAACATGGTTATTTATCTAGTAATTGTGAGAACAACATATAACAAATAGACCACATATATACGTAGCGTGTCTGGAAGAAATACTCAGATATAAATTACTACTTTAGTCAATCTTAATATTAATTATTTGTCAACTATGCTTAATGTGCCTCTCT-AGTCTCTCAAGACTAAATTGCTAAGGAACCCTGGAATCATTTGCTGGCATTCATCCTTT---------------CAAGCAAGGTGCCTGTTACAAAATATCTGCTCAATTAGTATGTATTGGATACATCTTTTGGAAGGTGAGGAAGGAAGCAGTGAAATTAGAAGACTTCTGCCTAGGCGACTGTAAAGTGCTCCTAAGCATCTACCCACCTCCCTGCACACAAAAACTCTCCATTCTATCTCCTCGAGTCTCCTAGCCTTAAAAGATGGTCTAAACTACCCCAGATCCAGGTAAATAACGGATCAAGTCCTTCTTCCCTAAAACAGGT-GTTATTCTTTCTATT-CTATGAGCCTCCACCTTATTTCTTAAAAAAAAAAAAGAAAAAAATGTTTACTG--TTTAAGAAGATAACAGAATCTCAAAAGCTAACTCTTCAACTGTGTTCAACTAAGGACCTTAAACTGCTCTCTGAGGATAGGTGAAGCGGGAAAGGCTCTAGGTGTCTGGTGACTGTTTCTTTTGTTGGTTCGTTTGTTTTTTCAGCCTTAGCACATTTA-TCCCTTGGAGAAGACAA------------TGGAAAATAGGGCAGATGAGCGTGCGTGGCTTATTTATTCTTGAGTCTGGAGTTAAGAAGGTTGTACTTTTTCCTTAGGATTGCCCTTGGTTGGTTCACAAATTTCGCAAAGTGAATGAAAACACATGAAGGCCACTGAAGGGAATAACTAGGGGACG------AGATGTCTGAGCCCCTAAATCGAGAAAC s canFam2.chr35 28959888 1517 + 29542582 GGTGGGAGGGGCA----------------TCCACCGCACCTAATTCCC-------------------GGGGCAGGGGCAGCGAAGGGTTCTGAGGATATTCTT-TTGCTGG---TTTTGATTTAGCCTTCATTTCTGACCCACGCAAAGGCAAGTTGGATTTTCATCTCACGGTTCCAAAGAGAGAAAGGA----------AAAATAGAACATTTCCTCTTTGTAGCTTCACTTACTCAAAGTAC-----CTGCAGACCCTTCCAGGGCGACCCTGCATTGTCTAGGTGCTTTCCTGCTCAGTTATAATTCTGGGTTTCAAACCCGAAGATCTGTGGCCC----CACTCCAAAAAGTACCAAGTGCCCGCC--AGTCCCTTTCCTCTTTGACACCACA-AGTCTGGGACTA-ATGGAAGCTTAACCAATGCGTGTTTCTTGAGGGCACAGATAAAAGGA-----------------------GTGTGTGAATATTCAGTGGGATAGCCCAGTGTTAGACCTTTGGGAG------GGTTTCCTTTT--CCTTCCTTCCTTGGGCTAAATCTGACATGGGTGAGGGGGATGGCTGTTGCATCTTTTGTTTTGCTTTTGTTTGTTTTTGTCCTTTCTGGGTCACAGCTCCCAGGTGGACATTCTAGTGTTCAAATGGAACCATAAATAGGTGTCCCCCAGTGTGGATGAACACAAGTCGACACCGTAGTGCTGCGCATACTCACCTATTTTTTTCCAAATCTTAACTTCATCAGGATAACATGATTGTTTGCCTAGTAAGTGTAAGAACAACACATAACAAAGAGATCATATATACA----GCATGGCTGGAAGCCACACCCAAGTATAAATTGCTCCTC--ATTAAGCTAAATATGAAGTCTTGACCACCTGTTCTCAATATGCCTCAGTGAGTCTCCCAAGGCTGAATTGCGAAGGCATCCCTGAATCATTTTCTGCAACTCATCGTTTTGCTAGATCTCCAACCAAGCAAGGTACCTGTCACTAAATAGCTGCCCAA-------------GAAACAT---------GGTGGGGAGAGAAGCAGTGAAAC--GAAGACTTTTGGCCAGGTAACTGTGAAGTTCTCCTGTTTATACACACAC---------------ACTTCTCCATTCCATGTCCATGAGTCTCCTGGCCTTCAAAGATGGCCTAAGCTATCTTAGATCTATCTGAGCAATGAACCAAGTCTTTTCTCCCCAGTACAGGTGGGGATCCTTTTTATTCCCATGAGCTATAATCTTATTTCTTAAAGAATA-----AGAAAAATGACCACTGGTTTTAAAGGGATACCAGGACATCGAAAGCCCATTATTTAACT-----------------TTAAACTACTCTCTGAGGATAGGC-AAGGGGGAGGGGGTATAAATGAC----------------------------TGCTTTTTCAGCCTTAGCACATTTATTCCCTAGGAAAGGATAGTGGGTAAAGATCTGGAAAACAGGGCAGATGGCCACG---GGTTGGTTTATTTTTGAGTGTGGAATTCAAAAGCCTGTACCTTTCCCTT-GGATTGCCCATG--TGGTTAACAAATATCACAGGGTGAATGCAAACAAATGAAGACCACCTAAGGGAACATCTTGGGAAGGGTGGACAGATGCCTGGGCCCCACAATCCAGAAGC a score=16851 s hg19.chr6_ssto_hap7 253421 581 + 4928567 TCTCTATAGAAAAGTGTACAATATGTCTGGTA-------AGGGAAAAAAAAATCTAAGGACATTGCTTTGATGGAACAGAACGGGTAATT-GCTGTTTAATAGAAC---CATGTTCAGTTACAAAACAGTGATTTTC-ACTAAGAATTAAATTCTCCAAAATTCTCATCTCCCCTCCCGCCCTGCATACCAATTGGAGATAGAGCTGGTAGCATTTTCAAATGTTTTTCAGATATGCTTGGCAATTGTCTTTGTTTTAACAACACCAGAGTCAAGAAACTTGCCAGTTTTAGAGTGCTGAGATAAGAAAAAGTGGGTGGAGGGTTGTAC----TAGGGGTGTGGAA----------GGTATAGAATCTAATT--ATCAATTACTGACTTGGTTATCTTTTACCATTCTTCTGGAATGGCTTACCACCAGGTTGCCACCAATAACATTCCATATGAAAAAAGAAAGGAAACAAAAAACTGACAAAAAACTCCCCCCTCAGTCTCATTGCATTGGACCTTTTCTCTTGCTTCCAGTCCTGTTGACTGGAT-CTAAATCATCCAAACTACCAGATGCAGGAAGGGGTAAAAAGAGAAACAAGAAGTGAAGAAA s canFam2.chr35 28963696 508 + 29542582 TTTCAATGTAAAGGTGTACAATATATCTTTTATTTTTCGATGGAGGAAATTGCTTGAGAAGACTG---------------ACGGGCAATTTGCTGTTTAACAGAACGTGTATGTTCGGTTACAAAATAGTGATTCTCTACTAAGCATTCAATACTCCAAAATCCTTCGGGGCCTTTCT------CATGCCAATTGCAGATACAGCTAGTAGATTTTCAAAATGTTCTTCAGATAGGCTTGG-AGTTGTTT----------GACACCAGGGTCAAGAAACTTACTGGCTCTGGGGTGCTGAGA------------GGAGGAGGGACAAACCGTTTGGGGATGGGGAGACTGTAGGGTGGTGCACAATACATTTCTATTAATTACTGA-TTGGTCCTCTCTTACCATTCTTCTTAATTG--TTACCACCAGCT---CACCAATGACATCCTATGTGTAAAAAAATGG-------------------------CCCCCTCAGTCTTGTTACATTGTCCTTCTTTTCCTGCCTCTAGTACTGTTTACTGGACATTAAGTCACC---------------------------AAAGAGAAACAAGAAGTGAACAAA a score=22232 s hg19.chr6_ssto_hap7 256678 569 + 4928567 tctcatcatgtcatttcttcctgcttagaattcccagtggcttcacatTGCTGCTAGGGTGCAGTCAGCTCTCTGCACTACTAGCCATAAC---CTCTGAGCCTGTGAGTCACTGGTCTGTCCCTGCCTTCCTGTCCACCTCAGACCCCACCTTCATGAACACTCTCTTGAGCTCTCTGTACACAAGCTGCTCAGGCCTTCTCTCAGGTGTCTGGAAGTGTTCTGCTCTTTAATCTCCCTGGAATGCTGGAATCACATTTTTGtccaact---------aggcctttagttttcagtttaaacatcacttcctgggagaagtcttctctaatcccctggaagaggtcaTCTCCCTTTATAATCCATGCTCTTGAAGATAGAGGGCAGGGTGTGATTTACAGTGTGCGATTTACAGTGTGCATTATTTTGTCTCACCTTACTTTTCTCTATGTTCCCTTTATCTTGATTTAAAT----TAACATTTTTCACTTTATCTTATAGTAT---AGTTGTGTAAATAACCTCGAATCTGTTTTTCAATAGTAGCATAAATAAATGCACGATCAGAAATGTA---CATGACAACCATT s canFam2.chr35 28967064 573 + 29542582 tctgatcatgtaatttctctctgcttaaaatccccagtgactttgcactgctgcaagagtgaggtctctattctccacccctggccataataatctcagagcctgtcagtcttccatgtg-ccctgtgttcctgtctccttcttgcc--------accaattcttgccaaagctttctgcctgccagcacttcaggcctgcttgcaactatctggaagtgctgtcctctttgctcctcctagaacgctAGAGCCACGTTTCTGCGCAACTTATCATATGAAGCCTTTCATTCTCAGTTTAAACAACACTTTCTGGGAGAAGTCTCTTCTCAGCCCCTTGAGGAGGTCATCTCCATTTACAACCTGCTCTATTGGAAGTATGTGGGAGGTTGGG-------GGGCACTATTTATAGTATGCATACTTCTTTCTTAATTTTCTAC-CTCTATTCTCCCTTTATCCTGACTTAAATCTATTAACTTCTTCCATTTTATCTTATTGTACTACAGTTGTGAAGACCACCTCAAATTTGCCTTT-ACTGGTGGCATGAATAAATGCATAATTAGAAACGAATCTCATGACAATCACT a score=4351 s hg19.chr6_ssto_hap7 259527 117 + 4928567 ACAAAGATGGGAGTTAATTTTTTCCA-TGAGTTGGGGACAAAAATAACTGTGAGCCATATTCAAAGTGG--------------------GCAAAAGCATAGA-----------------------------------TGGGAATAAAGAAAAGGAACATGGATAGGATTTAAG s canFam2.chr35 28967842 173 + 29542582 ACAAGGATGTAAGTTactttttgccaatgacctgggggcagaaatagtctggagccatattcaaaggggcaagggaaaaataaaacaaagcaaaaacaaaaaacaaaaaacaaaaacaaaGGGGGAAGGAATGGAGTTGGGAATAAGTAAAAGGAACATGAACAGAATTTAAA a score=1023 s hg19.chr6_ssto_hap7 259644 69 + 4928567 TT----------GGACGATATCAAGTTTCTGCACC-----TTTTTACTCACTAGAATGTGCAGGAAGAAGGCTTTTGCAGGGAg s canFam2.chr35 28968231 84 + 29542582 TTAATAAAATAAGGAAGACATTTGGACTCAGGACCAATACTTTTTTCTCACTAGGATTTCGAGGAAAGCAGCTATGATATGGTG a score=3697 s hg19.chr6_ssto_hap7 259791 228 + 4928567 GTGGCTTTTAGTACCTGATTCTGGTATCATGTTTGAAAAAGCCAAAAAGGACACTATCGTTTTATA-----------GGGACAGATT----------TCATATACTGCAAAAATTCACCAAACCCTGTAGAACCCCAAATTTTAAACCACGAATAGGCGAGTAACTCTGATGCCAAAT----AAAAGTAGTAAGGTGAATACATGGGCCCTCTACAGTGAGATAGCCCCAGATTTTCTGAAGAAAACTAACAT s canFam2.chr35 28968377 228 + 29542582 ACGGTTTCCACTGTCCATCTCTGGCTTCACTTTTGCAGAG-------------CTATCCTTTTATGCAGAAACCACGGGGATACATGACCTAGGTGGCCACATGATGGAAAAAT----------CTTTAGGGTCAAGCATTTCTAGCCCGCAATGAAGAAGTGACTCCCCTACAAAGTGAGGAAAAATAGT--GGGGGATACATGGGAGCTTTACAGTAGGATGGTCCAAATCTTTGTGAAAAGAACTAACAT a score=10710 s hg19.chr6_ssto_hap7 260047 224 + 4928567 TTAATATTTTATGATTCCTGTTACTCTGCTTACAGGTGCCAAAGTAATCTTCTGTTGTTACTTGCTTTCCAGTGCAGAGTTTATTTTACGTAGGAGGGAATATACTGATCAATTATCAAGAAAGTTATAATATGTTCATATTCTGGCTTGGCATATTTCTGGCATTTAGTTACCGTGAGTCAGCCCTGCAAGTCTTAAAAACTCT-AGGTGAATTTAAAAATAGT s canFam2.chr35 28969393 209 + 29542582 TTGATATTTTATTACTTCCACTACTCTTATTACAGGTGCAGAGAT----------------TTGATTTCCATGGTAGAGTTTATTTTACATAGGTGAGAATGTACTGATCAAGCATGAATATGGTTATGATATATTCAGGTTCTGGCTTGGAACGTCTCTGACATCTGGTTACTGTGTGTCAGTCCTTCAAGCCTAAAAAACTCTGGGGTGAATTAAAACATAGT a score=4741 s hg19.chr6_ssto_hap7 260898 94 + 4928567 TTCTGCAAAGGAGAGGAACAGACTCTGAATTGTGATGGCTCCAATAAGGATAAAGCAGTCTCTGGAGAGCTGCCTGAACAGCCAGACAACCCAG s canFam2.chr35 28969602 91 + 29542582 TTCTACAAAGGAGAGGAACAGATCCTGAATAGCGAGGGCTCCCATAAGGATGAGGCATTCTCTAAAGA---ACCAGATTATACAGAGAGTCCAG a score=6059 s hg19.chr6_ssto_hap7 261674 244 + 4928567 ATTTTTTCAATAAA---TTAAGTTGCACCAGTAGAAGGATACTGTCCCACGAGGGAATTGAGGTCAGAAGAACTCGGAGAAAACAGCAAGCCCACTGGAAAGAGATGA-----------TACTCATA-AGAAGAACTAAAAGAGATTTACTAGAACTTGATAAGCCGTCGGGACAAAGAGAGCTGAGACTTCGTCTGTCTGACAACAT-ATGCCGGGCCC-----GGCAATTATAGAGATAATTGTATACTGAACAAATAGGGTT s canFam2.chr35 28970019 261 + 29542582 atatttttaaaaaaGAACTAAGTTGCATCAATAGAAGGGTAGTGTTCTAAGAAGGACTAGAAATCAGAGGAACTTGGACAAAAGAGCTTGTTCATTGGAAAGAGACGAAGATAAGCCATTGCACACATAGAAGTAAAGAAGAACATCCATATGTACTTATCTACTGATCAGGTGGGAGAAAGTGGAGACTTAACCTCTTTGACAGAATAACGTCGGGCCCAAAAGGGCAG----GAAAGCTGTTGTTTCCTGACCCAGAAGAGCT a score=3225 s hg19.chr6_ssto_hap7 262026 211 + 4928567 ACTAGTGCTCCTCAGCA-GGTGTTTTCAACACTGAT-----TTTTACCTTATTTAAACATTTTTGTCTACATTACCtttattttaaatttctaaaataaaatattCTTATGAAACTTCTCAAAGCTCACCAGCTTCCAAAACCTGAATCAGATGAAGAAAGTCGCTGCTGATCCCGCTGCTTTTGCCCCTCTTATTCTGAACTGATGACCCCCCACT s canFam2.chr35 28970371 197 + 29542582 ACAAGCGCT-CTCAGCGCGAAGTATTCGCTGCGGATTTTACTTTTGCCCCAATTTA--GTTCCTCCCCAGATTACCTTC-CTCTACACTTCAGAAATGAGATGCTCTCCTGCAAC----------------GGCTCCTAACCCCGAGGCCGCTGGAGAAAGTAGGCGTTGACGCGACCGCCTCGGCTCCCCTGCGTCCAGGTTGACGACCTCGCCCT a score=1977 s hg19.chr6_ssto_hap7 262804 364 + 4928567 gtttgccaggggattgtctggagtttagcactcaaagacccacttcccaggaaaaccctACCTGGGATGTGAAAAGTCCGGGCTTTCGGTTTTTGGCGAT---------AGGTTGGAGAGAATATATACACACAAAAAGTGACAACCCCATCCTTGTTCCCACCCCTGCCCCA-----GGGCCGAAAGCAACACTGATTTTATTGCCAATGGATAATAGGGTTTAGGTTATCCCACTTTTGTAGTTGTCGCCGTTTTT----CCCCTGTCCGCTGATGGTGACAACCTTG---------------------------CACCGT-GCATCGCTCTGAGTGAGGCGACTTAAATGCGCGATGTTACCGT-TTTCAGCCGTGACCGT----AGCACTCGGTCT-----TTGACTGTAGACTGT s canFam2.chr32 22135240 382 - 41731424 GTTGGGCAGGGA--TGCCCCAGTTGTAGCACTGGAAGCTCCACATCAGGAGGAAA---TTCCTGGGAGG-AAAAAGTCTAGGTGTTTGGTT---GGCAATGGGTGCAGAAGGTTGGTGGTGATGGGGGTACAAAA---------------------TCCATACTACAGCTTGAAAGGCGGGCTGAAGATGGCAAT--TTTTGTAGTAGATGGAT------GGATGGCTTATCTGCCTTCTGCAGCTGCCCTCCCTTTTTCTCCCCCTGAGCATGGATGTTGGCAATTGTGACTTGCTGTTCATGACAGTCAATCATCCATTGTTGTACCACTACAAGTGCTGAGATGCAAGTGTGCAACTTAAGTGCACTGTAATCATGATTGTTAACAGCACTTTGCCTGTGGATTGATTGTTGTTCTT a score=1354 s hg19.chr6_ssto_hap7 263168 30 + 4928567 TGTGTCTACATAGTGCTAGTTTGTATTGCT s canFam2.chr35 28971201 29 + 29542582 TGAGTTCAGATAGTGCTAGTTTA-ATTACT a score=24889 s hg19.chr6_ssto_hap7 263506 878 + 4928567 TTAGTTTAATTTTTAACATTGTGAATATTATGGCCAGATTTTT--AGAGTTTAGATAACGAAAACGAGAACGATTATCATGCGAACGCCAGCATAACCCAGATAGCACTGAAAAAGTCTAAATAGACTGTTACTTCAATGACAGATAGAAGGACACATACAACCGGATTTGGAGAATAAATAATCAAAACGGAGCATACTACGCAATATTCAAAACAG-ATTTGG--------ATGTGAAAG------------TACACAGGGAGACGGCATCTCTCAAGTCTGGGATGAGACAGGCAAGAACTTCTGAACCAATCAAAAGTGTTTTTGTCTCCCAAAAGTGACACCAGCGCTCTGTAGAGAATAGCATTGGGCTTGCTTACAAGGAGACCTTAAAAAAAGTTAAAATTAAATAAAAGAAAATGGTATTGGGCAGAATATTAGAAAAGA-ACACGCATTATTTTATGGCTTCCTTAATTACTCTATTTCCTGATTCAGAGGTTGCATCTCGTGGGTGAACAAGA--GGAAATTCTGATACCACATATTGGTCTCTTGCAGTGTACAGCTGATTCTATCAGACGACCTTGCTCTCTACAACAT------------AATGATGTGTCAAATCCACCTCAACCATTAAAAAAAAAGTTTCCCTTAGCTCTTACATACTTTGATTTGAAACATGATGTTGAAAATCATCTTTCCTGGTATGCATGAAGACTTAA-TGAAACCACTTGAAGCATAAACAATCATTGAT--ATGTTGGTCAACTACAAGTTAGATCTTGCTCATCTATCTGCATATTTGGCAGACAGTGCAAATGTAAATTTTGGCAAA-TTCCATTCAGACTATAAAC-TTTCTACCAAAGAAAATGAAAAGATCTTACATGTGACGTGTTCTGCACATGTTGTTC s canFam2.chr35 28971418 815 + 29542582 CTGAGTGAATTTTTAAC-CTGGGAACAGCGCGACCATATTTTCTAAGAGTTTGAATAACGAAAAAGAGAATGATTACCATAGGAACGCCAGCCTGACCCAGACATCACTGAAAAAGTAGAAAT-GACTGTCATTCCAAGGACAAAAGGAAAGACAGGTGCACCTGGGTGTGGG----AGGTAACCAAAAGGGAGGGTACTACATAGTATGTGGAAGAGAATTTGGAACTCTACATGTCAGAGGAGGCATGCAGTTGTATAGGGAACCTAAATCT-GCAAATCC-------------CATGACCTGCCGAATCAA--AGATTTTTTTTCACCTCCC-------ACACCAACACTCATTTGAAAATAGCATTGTGTCT-----------------------------------------------------------AATACTACAAGAAACACATGCATTATCTTA--------TTGATTGCTCTATTTCCTGATTCAGAAATTGCAAGGCGAGGACATACAAGACGGGACATTTCTATGCTGTGTATTGGCCTCTTGCACCATGGAGCTGATTCCAACAGATGAACTCGCTCTGTACAATATGGCACCAAATTGGGTCGTGTGTCAAG-ATACAGCAAC-----AAGAACAAATTTCCCCCAGCTCCTATGTACTATTATTTGAAGCATAGCATGGAAAACCTTC-TTCCTGATCAGTATGTAGATTTAATTAAAACTTCCAGATACATAA--AACTAGTGATTACTAGTGATTAAATACAAAATGGACCTTGCTCAGACATCTGCATGTTTCGCAGAAGGTGCAAATGT-AATTTTGGCAAATTTCCACTTAGCCTATAAGCTTTTTTATCAAAGAAAATGAAAAGATATTATCTGGTGAGTGTTCTACACAACTTGTCT a score=13536 s hg19.chr6_ssto_hap7 264705 345 + 4928567 CAACACTGCTAAGAAGGATTGTGATTTGTTTACTGGTGATATTGAGGCTTTCATGGCTTAATGAGATTTATGGTCACTTTTTAGTTTCCTCAAAATGTGCAGAAACAAT--AAGAATTTTC--ACTTTATAGAAACGAAAGGAGGTAGCCTCCTTAGAAATGT---CTAAAGTTGACTATAATTATTGCTGGCCATAGG-ATAGATGTTAAAATGTTTACTTGGTGTAAAATCATATTTTCAAAATGTGGGACAAGAGGAATGCTATTCTCTAATTTGACAATATTTTAAGAGTGAGAATGGAGAAAAGAACTACCGTAAAACAGAAATTTATACTTTCATTTGTTTGACGTt s canFam2.chr35 28972234 345 + 29542582 CAACACTGCTAAAAAATGTTGTAA----TTTACTCATGATATTGAGGCAGTCATAGTTTATCAAGCCTTATGGTCACTGTTTACTATCTTCAAAATGTGTGGAAGCACTTAAAGAAGTTTCTGGCTTTAGAGAAATGGAAGGAGATGGCTTTCTCAGGCGTGTGCCTCCAAGATACCTAGCATAGTTGTGGGCCATAGGAAAAAATGTTAAAACATTGTTCTCCTGTAAAATCTTTACTTCCA---GTGGGATAAAAAGAATACCTTTCTCTAATTTGGAAACACTTTGAGGATGAAAATAGTGAAAAGGACCGCGGTAAAACAGACATTTATATGCTC-TTTCTCCAGCGTT a score=5219 s hg19.chr6_ssto_hap7 265471 164 + 4928567 CAATGTTATGTTATGTAGATTGTGACATAA----AGATTCATACACTAAGAAAAGATTCTTTTTTTAAAAAAAAAAGACTGCTTCAGAATG----------------------------------------CAAGTTAAATAGGACTTTATCAATCTC-TTGCTAAAAATACAATTTATTTGGAATCCAAGCTTTGTTTCCCAAATTTA s canFam2.chr35 28972582 209 + 29542582 TGATGATATGTCATGTAAATTGTGACAAAGGCTTATATATACACATACAGGAAAGACTAATTTTTGGTGGAAACAAGACTGTTTCAGAAGAAAGGAAAAACAGTGTTCACAGGAAAGGGCAGCCAAGCAGTTAAGTGAAACAAGACTCCCTTAGTTTCTTTACTAAAAGTATAACTTACTTAAAATCCAAGTTTTCTTTCACAAGTTCA a score=18726 s hg19.chr6_ssto_hap7 265737 610 + 4928567 TCTGCTATTGCTAGTAAGTAAA-ATACCGAGTATTCAATGCTCAAATGCTTTTGTTGAGAGGATATTTAGTGTGATTTTATCACACTAGAATGATACCAGGAATCTAAGTAATATGGGCTTGATAAGAGCAGAGCTGCAATTCAAAGTGAATTTTACCTTTGACTGTATTCAGTATTACCACTATATAAAAGAAAATAAAGATGTCTTAAATGTTGCAGACAGGTCACAGAAAGAATATTGGAAAAAGAAACAGAAAGGGTAAAGATACTCGATTGTTTCATGCGACAGAAAGAAATGT--CATTATTTTTTATTAAATATAGGTAATATCTGCTTAAGTAGTTTTATTGTAGTTATGTTCTTCTTTTACATTCTTGTTGTATTTTACGTTTTTGTATTTATGTTTTTCATTTA------------TTAATGCGCCTTAAAGTTGAAATAATATAGCCTATGAGACTTAAATATCCAAT----AGTTTTAAAAAGTTAAAATAAATCACTACATAAGAGAACAGATAGAAATACTAAAAACATATTGTTATATTTTTCCCAAACATATTATTTATGTAATTAGTCCTATTATA-----------------------------------AATTACTTCTAATTGCCATTATTAACTACTCCTATt s canFam2.chr32 22137368 607 - 41731424 TCTACTATTGCCAATAAGTAAGTACATTAAGTATTTTGTGCTCAAATATTTTTGTTAAGAGCTTATTTAACTTGATGTCATGGAACCGGAATGACACCA-GAATCGGTGTAATGTGG-----------GCAGAGTTGCAAGTCAAAGTGAATTTTATGTTTAACTATATTTAGTTTCAACACTATATAAAAG-----AAGGATGCCCTGAAGGTTGCAGGCAACTCAGAGAAGTATTATTAGAAAGAG-AACAGAAAGAGTAAAATTATCATACGGTATTATGGGACAGAGAGAAATGTGACATTG-TTATTATTAAATATACTTACTGTTTAATTATAT-GTTTAAATCTACTTATGTT--------------------TAATTAGTATTTTTGTATT--TGTTTCCCTTTTGAAAAGTCTTACCTTTATGTGTCTTA----------AATATAGTCTA--AAATTTAAATATCTAATACAGAGTTTAAAAAGAGTAAAAGTAACTGCTTTATCAAAGGACAAAAAGAAACCTTATCAAAACATTGTTATA-TTTTATCACACATATCATTTGTTTAATTAATACCACTATAGCAGtatataaatatatatatatagtatataatataGTTATTACTATTTGACA--GTTAACTAGTCTCATT a score=5411 s hg19.chr6_ssto_hap7 268057 198 + 4928567 TTTTGTTTAAGTAATAACAGTTTTGCAATGGAGAAACAAATATTGCAGAATAATATATAATTTCAAACA----TCTATTTTTAAAATTTGATGTCAAAGTAATA-------------CATGCATATATTATATAATTGTTGGATTTTTTTTTTGTGGGGGTGGAAAGGTTTGGTATGGCTAT-GTCTCAGTTGGCTCCCTAAAAAGTTGAACAGCA s canFam2.chr32 22137975 202 - 41731424 TTTTGTTTAAACAATAGCATTTTTTTAGT-AAGAAATGAATAATACTGAATAATACAGAATTCCAAATAAAGGCCTAGTTTCATGTTTTTACATTAAAGTAATAATGTAAAATAATGTATGTCTTTATTACATATATATTATTATATGTTTTTGATGGGGTG-------------TAGCTGTGGTCTGGGTTGTCTCTCTAAAAAGCTGGTCAATA a score=543 s hg19.chr6_ssto_hap7 268255 224 + 4928567 ACAGCAACTGGTTCACCAGTTTGGGGAAACACTATTTATGAAAAGAATAAAGAATTAAGAGGTCTCAGTGAGCTTCAAGGACAACGTCTGGCTTAACAGATAAAAATGGATGGTT----TGATAGATAATAATGGTTTATAGGTGATTGGAGGTAACAGGATGATTGCCAATGG------CTTTTCCTTCTTTTCAGATACTTATTCTTTGGGTCATGAAACTGCTTCTGCCTG s canFam2.chrX 63414778 187 - 126883977 ACAGTA--TAGT--ACCA-TTTGGACAGG----------GaataaaataataaataataaaatatttgtaaattaCATAGATAAGA--------AACTGGTAAACTGTGGTGCCTTCTGTGAAAGATAA-ATTAGTGTATGG------------AACA-------TGCCAGAGAGAGTTTCTTTTTTTTATTTTTAAATG--TATTTTTAGAACTGTGCAAC--CTTGTGCCTG a score=11356 s hg19.chr6_ssto_hap7 277752 182 + 4928567 ACCTCCGAACTTCCTATTGGTCTCCTGCGCCCCAGAGGGTACCCTGCTTTTGCCAACTTGATGTCTCAGAACTTTGGTGTCCTTGGTCTCAGACACCACTTTGCCATCCACTCACTATCGGGCGGGTGGTGGTCTTTCGGATGGTTTGCATGGAGTTGCTGCTGTCCAGGGCATCACGAAGG s canFam2.chr27 5193214 177 + 48908698 ACCTCTGAACCTTTTATTGGCCTCCTGCTCCTCAAAGGGTACCCTG-TTTTGCTGCCTCAACGCCTCAGAATTTTGGTGTCGTTGGTCTCAGACACCACCTTGCCGTCCACG----ATCTTGCGGGTGGTGGTCTTCTGGATGGTATGCAAGGAGTTGCTGCTGTCCAGGGCGTCAGTAAGA a score=17657 s hg19.chr6_ssto_hap7 277934 224 + 4928567 CTGAAGTCCTCGCCATCTTCCAGCAGGCGGCGGTAGGTGGCGATCTCAGCCTCCAGCTTTACCTTGATGTTCAGCAGGGCCTCGCACTCCTGGGCCTGGCGCTATCCGTCTGCCCCGGTCTGTGTCAGCTCTGACTCCAGGTGCAGCAGGATTCCGCTGAGCTGCTCCATCTGCAGGACATAGCGGGCCTCCACCTCCCTCAAGCTGTTCTCCAAGCTGGCCTT s canFam2.chr27 5193773 224 + 48908698 CTGAAGTCCTCCCCGTCTTCCAACAGGCGACGGTAGGTAGCAATCTCAGCCTCCAGCTTGACCTTGACGTTCAGCAGGGCCTCGTACTCCTGGGCCTGGCGCTGCCCCTCTGCCCGGGTCTGGGACAGCTCTGACTCCAGGTGCAGCAGGACCCCGTTGAGCTGCTCCATCTGCATCGCGTAGCGGGTCTCGACCTCCCTCAGGCTGTTCTCCAAGCTGGCCTT a score=16680 s hg19.chr6_ssto_hap7 278158 289 + 4928567 CAGATTTCTCATGGAGTCCAGGTCGATCTCCAAGGACTGGACTGTATATCTCTGCTCCGTGAGCGTCATCTCAGCAGCTCCAACACCGATGGACTGCATGGTGACCACTGTGGTGCACT--------------------------CTCA-----------------------------------------------------------------------------ATCTGCTGAGGCCAGTGCTTGTCTAGCTCCTCTCGGTTCTTCCAAGACAGCTCGTCTTATTGGGCCCAGATGTCTGCCATGATCTTGGCGAGGTCCTGAGATTTGGGGACATCTACCTCCACGGTCAACCCAGAGATGGCAATCTGGGCTTGTAGGCCTTTTACTT s canFam2.chr27 5194297 392 + 48908698 CAGGTTTCTCATGGAGTCCAGGTTGATCTCCAAGGACTGGGCGGTACGTCTCAGCTCCGTGAGGGTCATCTCAGCTTCTCCGATCTCAGCGGTCTGTGTGGTGACCACTGTGGTGCTCTCCTCGATCTGCAGGGTGGGTATAGTCCTCAGGTCCCCCCTCCTTCGCCTCCCTCCCACAGCCTCAGGCCTCTGTGTCTAGCCGGGCACCCAGCCCTTCCCCTCGTGCACCTGCTGAGACCAGTACTTGTCCAGCTCCTCCCGGTTCTTCTGAGCCAGCTCGTCATACTGGGCCCGGATATCTGCCATGATCTTGCTGAGGTCCTGAGATTTGGGGGCATCCAACTCCACCGTCAACCCAGAGTTGGCGATTTGGTTTTGTAGACCCTTTACTT a score=13548 s hg19.chr6_ssto_hap7 278447 156 + 4928567 CCTCTTCTTGGTTCTTCTTCAGGAAGAGCAGCTCCTCCTTGAGAGCCTCGATCTCTGTCTCCAGCTGCAGCCGAGTGACATTGGTATCATCAATGACCTTGCGGAACCCATGGATGTCGCTCTCCACAGACTAGCGCATGGCCAGCTCTGTCTCAC s canFam2.chr27 5195487 156 + 48908698 CCTCCTCGTGGTTCTTCTTCATGAAGAGCAGCTCCTCCTTGAGAGCCTCGATCTCTGTCTCTAGCTGCAGCCGAGTGACATTGGTGTCATCAATGACCTTGCGGAGCCCATGGATGTCGCTCTCCACGGACTGGCGCATGGCCAGCTCCGTCTCAT a score=5840 s hg19.chr6_ssto_hap7 278603 78 + 4928567 ACTCGACTCTGAAGTCAACAGCAGCAAGTCGGGCATTGTCAATCTGCAGAACGATGCGGGCATTGTCCACAGTATTTG s canFam2.chr27 5195970 78 + 48908698 ACTTGACGCGGAAGTCGTCAGCAGCGAGCCGGGCGTTGTCAATCTGCAGAACGATGCGGGCATTGTCCACGGCACTTG a score=30872 s hg19.chr6_ssto_hap7 278681 458 + 4928567 ATCTGAGCCCCCAGGTCCTCCATGGTCTTGAAGTAATTTGTCCAGTCTCCGACCTGGCGTCCCTTCTTCTCCAGGTGCTCCCGGATTTTGCTCTCCAGCTTCCGGTTCTTGGTCTCCATGCTTCTCACTCTGTCCAGGTAGGAGGCCAGGCGGTCCTTCAGGCTTTGCATGGTCTCCTTCTCGTTCTGGATGCCTCCCATTCCTGCCAGAACCCCAGCCATCCCTGCCGCCAGGCCTCCAGACCCCATGCCGCCCCAGAAGCTGGTGGAGGGGGACGCGGAGATCCGGGAACCAGAGCCCCCGGCGCCTGCATAGACGCTGGCCGC---GCTGCAGACTGGCTGGGAACCGTAGCTGGGCGCCTGGACAGAGCCCAGGGACCGGTAGTTGGTGGAGAAGGTGGAGCGAGTGGTGAAGCTCTTGCTGTCCGGGGA-------GGAGAGCGA-----GAGGACAGGACTCAGGCT s canFam2.chr27 5196807 473 + 48908698 ACCTGAGCCCTCAGGTCCTCGATGGTCTTGAAGTAATGCCCCCAGTCTCTGACCTGGGGGCCCTTCTTCTCCAGGTGTTCCCGGATTTTCATCTCCAGTCTCTGATTATCAGCCTCCAGGCTCCTCACCTTCTCCAGGTAGGAGGCCAGGCGGTCATTCAGGTCCTGCATGGTCTCCTTCTCGCCCTGGATGCCCCCTATGCCCGCCAGACCCCCGGCCATCCCCGCGGCCAAGCCCCCGGACCCCCAGCCGCCCCGGAAGCTGGTGGAGCGGGATACGGAGATCCGGGAGCCCGAGCCCCCTGCGCCTGCATAGACGCTGGCCGCACTGCTGCTGATGGGCCGGACCCGGTGGCTGGGCGCCTGCACGGAGCCCAGGGACCGGTAGTTGGAGGAGAAGGTGGAGCGGGCGGTGAAGCTCATGCTGCTCGGAGGGAGGGCCGGAGGGCGACTCGGGAGGCCAGGGCTCAGGCT a score=10300 s hg19.chr6_ssto_hap7 279255 232 + 4928567 gagtgagacaaaggttttgtaagctactaatgctgataattaatcatgaaatttaagttgtgtaaagagggaagtaaagatgtaaggagaaaggagatgcattaaataattttccactgggcaaaagaaaataagctgaaaaaacagaaggtgataatcagtataagagatgattgaaatttacatcttgggcttggtgcctgcagtttaggttaatgtcaaggtcaagggt s canFam2.chr35 28973594 223 + 29542582 GAGGACAATGAAGGCTATCCTAGTTGGTAATGCTGGGAattacccacgaaacctaggctgcataagtaaggaggtcaagacgtgaggaggAAGGAGATGCATTCAATAATTTACCAGAAGACAAGAGAAGAAGAGCTTAAAAGACAAGAAGTGGT---TAGTATAAGATATGATTGAAATTTACATCTTGAG-TTGGTACTGGAAGTTTA----AATGT-AAGGTCAAAGGt a score=22123 s hg19.chr6_ssto_hap7 279487 562 + 4928567 aG----TgtgtttttcaaaatgtatattgtgacacccttgtggcacatgaagttaattgagtggatcatgagtagaattttgattttagtgaaagagaatggaatgcaaaatgtcccagtgcattgcaaataaataagagttgtgttgtAACCTATACTTATATTTTTTATTATGGGTTCCACTAAAA-AAGTTTGAAAAACA--------------GAATGGGA----TATTTAGAAATGAAAAAGTCAAGG--ACCTGGGGGAGACTAAT-----ggctgagggaatgcatgtccc-cctgcacacctgaaacccatttactagacaaggtttgggaagctc------------tTTGG-------------TGTATCCACTATACAGAAAGGGAAGGAAGACACCATGAGTAAGATTTGTTTCTCACGAGTTTCATATATACCTGGAAAAGGTGAGAAGTCATAGAAGCTGGCTTTTGACAGAATAATGCAGGCACATTTACTGAAACCATGATTTTTAAAGCAGGAAGAAATCATAGTTCTCAAATTAAGGAAAGTGAGCATATTTCTTTCT-----ACAAAAAGACTATCTTAGATTTTATGTCGAAATATACTCGTg s canFam2.chr35 28974400 609 + 29542582 AGGTGGTAtgtttttcaaattgcagcttataacgcttttatgggttctgaaatcactttagtggatcccaactagaatttcaatttaggtgaaagagaagaaattacaaaatgtcagcatgcatcacaAGTAA----GGGTTGTGATGTGA---ATGCT---ATTTCTAATTATAGATCCCACTAGAGCAAGTTTGAGAAACACCAGGGTAGAAAAGGAAAGAGAACAATCTTTAGAAATGAAAAGCCTAGGGGGAGATGGGGTGGGATGATAGGAGGGCTGAGGGAAGCCACATCCCACTTGCATACCTGGACCCCATTTGTTCAACAAGATTTGGGGAGCTCAAAAAAAAAAGATTTGGGGAGCTCTATGGTTGTCTCCTCTGTAGGGGAGGGAGAGGAAGACTCTATGGGTAGGATTT-TTTCTCACAAGTTTTATGTATATCTAGAGAGGGTAAGAAGTACTAGAAGCTGGCTCCTGATAG--TAATTTGGGCAAGTTTACTGAAACTGTGGTTTTTAA-GCAGGAAGAAACCACAGTTCTCAGATTAAGGAAAGCGTTAAGATTTCTTTCCTTTTGACAAGAAGACCAGCCTAGATTTAATCCTGAAATATTTTCCTG a score=8436 s hg19.chr6_ssto_hap7 281091 218 + 4928567 TAGCATGCAATAGCATTTCTTCATCTGAATGAAATACTGTGTTAAGGCATCAGACTCAAAGTTCGTTATTCTTTTGTTTTCTTATT--TTTTCAAATCTCACGTCTTCAGAAGAAAAGTATCATCTTGGAGAAGACTTGCTGCTTCTGATGGCAGGCGACTAGCATCATCACATCTGCATCCTTTTCAATCTTTTCCTCTCTTTTACTTCCCACATCTTA s canFam2.chr35 28975193 219 + 29542582 CAGTGTGCAATGGCCTTTCACCCTCTGCATGGATGACTGTGGTAAGGCACCAGAGTCAGGCCTGTCTTTTGCACTGTTTTATCCCTAGTTTTCAAATTTCATGTCTTCGTAAGAAAAGCATCACCTGAGAGAAGACTGGCT-CCTGTGATGGTGGGTGAATGGCACCCTCATGCTCCTGTTCTTTTCAGCCCCCTGCTCTGTCTTTCCTGCCACATCCTA a score=7394 s hg19.chr6_ssto_hap7 282331 378 + 4928567 CCACATCTTATGAATTCTGTGTCTTCAGTTCTTC-TGAGTCTGTTTCCTTTATTCTAATACAAGATTACCACCACCGTTTTACATGAGACTTTTTCCCTCCTCTTCCTTCTCCTCTTTCTGTAtctttcctggattactgcaacagcctccagtttggttgatttgcttctagccctgcttgtctcccattgtttctctatacagGGA-GTCCCACT-GGTGCCCTACAAAAAAAGATTTCCAGAGAAGGTGAATGGGGGCTGAAATATGACCTGAGCACTGAGAGCTAAGAGTCCTGGAGAGAGGACTTTTGACATTTTCCCTTTTCTATGCTTCATCAGCCCTGAGGGTTGTCTTTCTGTAATTCATCCACCAAAATGG s canFam2.chr35 28975412 308 + 29542582 CCAGCTACTGTGAATTCTCCGTGTTCTGTACTCCCTGAATGCATCTTCTTTATCCTGCTGTG-GATCACTACCACTGTTTTACTGGAGATAATTATCCTCTTCCACCTCCTGACCC--CAGTGTCTTTTCTCTCTCCTGTCTACAGCCTCCAAACTGGTTTCTTGGCTTCTATTCCTGCTTGTTTTATGCTACTTCTCTATACAGGCCTGTCCCATGAGGTGCCCTGCAGGAACGTGT----GGATCAGGTGAATAGGG-TTGTCA-AGGACCTGAGCCCTGACAGCCA----------------------------------------------------------------CCTTTCTGTAATTCATGCACCAAAGTGG a score=19463 s hg19.chr6_ssto_hap7 283017 718 + 4928567 TTACTGTTGCATTATTTGCCCAAAGGCACTCTGTGTGCTAGCTGTGGCTCT-GCTTCCACAGAACTGGCAAGAAGAGCTTGCAAAAATACCCGTCATACTGACCTCTCTGTTCAGAACACTTTTCTGTCTCTCCATAGCCTTTTAGGGAAAGCTCAAAGTATTTAGTATTGTCAAGATACGGCTCACAGTTTGTTCTTACTTCCTACCAATATACAAGAGACAATTCCA------AATGGAgtga--tagacagaataatgctatttccacccaaaaatatgccccttctaacccttggaaactgtaaatatgttaacttacatggc-aaagggactttg-agatgtgattaaggttagggaacttgtgatggagagatgatcctaatcactagagtct-taaaagtggaaagaggaagcagaagagtagttcagggaggtgtgatctgaggacgccatccaccattgctggttttaaagagcccagcaacacagcagcctttagaagctgggagtggccattagcttacaggcagcaataaaacagagactttgatccaacaactgcaaacaactgaattttgccaataatctgaatgagcagaaaacagattctcccttggggccaacagaaaggaatgcagcctgccaataccttgattttagcacagtgagaccataccagacttctgtcttaaaaaactctaaa-taataaatttatgttttttat s canFam2.chr35 28975721 596 + 29542582 TTGTTATTACATAATTTGCATAATGGC-CCCTGTGTGCTAGCTGTGGCCCCCACTTGCACAGCAGGGGCAGGACAAGCTTGCAAAGATACCAACTACAGTGACCTC-------------CTTTTCTGATTCCCCATGGTCTTCAAGGTAAAGTTCAGAGTCTTCAGCGCTGTCAGGATACAGCTCACAATGTGTTCTGATGATCTACTAAAATGTAATAG--CGTCCCAGAGCATAGTGGCTtgaggtgggcaaaataatg----------ccagagaca-----ctgctcattcctggaaactgttaat-------tttatatagtaaaagggactttgtagacgtgattaaggttaaggaccttgagacggggaggtgatcccaatcacaagagtccatgaaagtggcagcaggaagc-ggagactaggtcagagaggcagGATTTCAGAAGGCCTGGCACCCATGTT---------GAGCCAAG---------------------------GCTCCTGCTAGCTTACAGCCA-TAagaaaacaaagacatgggttc---------------ctaaagcttcc--------------------------------------------cagaaaggaatgcagcctgccaatgccttgatttcagcctggtgagacaacaccagactttagacctacagaacaataaactaatacatctgtgttatttCT a score=12124 s hg19.chr6_ssto_hap7 283735 403 + 4928567 aaccactacatttgtggtaatgtgttatgacagcaatagaaaactaacacatgtcttgaaatgccagccattttactatttcttacaattctgtgaatagactgggcttacctgggtgattctgctccacatgatgtcagtaaggactccattcctctgaaggcttgattgagctagggatgttcaagatggctcactcacataactggcagtggcagttgatgt--------tgctaggacctcagtcagttgagactgtgacccacagtgcctagccatggccttttcatgtggcttgggtttctcatggcatggtgactggattctgagagggagcatcccaagatttagcattccagaaaaccaagtcagaaggtgcaagatttcacatggcttagccctggaactg s canFam2.chr35 28976510 366 + 29542582 AACCG--ATGTTTGTAGTGATGTGCTGTGATTG----------------------TTAAAA----AGTGGTGTTAATAACTTTCTTGATTCTG---------CAGGCCGGTGTGGGCAATTCCGTTTCCTGTGGTGTCAGCAAGAACCCCAACCCTC-GAGGGCCTGCctgggcta-ggatgtctcagaggacacactcacatgacaggcattggtggcagatgtgtggggtctgctaggagcttagccc----cagctgtgggccagggtgccaagccagggcctctccgtgtgctttggttttctca--gtctggtcactgggttctcagacagagctgcccaagatcgagcattccaagaaaccaagttagaagctgccaaggttctcgtgactccagcctggaaCTG a score=5353 s hg19.chr6_ssto_hap7 287290 118 + 4928567 AAATTGCATGGCATGAGAACTTCATAATCTAAGACAGAGATTTGGAAAAGGTTTGAACTTCCAGCTTTTTCAGGAACTTCCCACATAAAAACCTGTACACAACTATTCTTATCGGATt s canFam2.chr35 28979449 116 + 29542582 AAATTGCCTTGTGGGACAACTATATAATCCAAGACAAA--TTTGCAACAGGTCCAAACTTCAATTTTTGGGGGGGACTTCTCACACAAAAACCTGTCCACAGATGTTCTTGTTGGATt a score=8566 s hg19.chr6_ssto_hap7 289007 225 + 4928567 AATCCCAAAGTCCAAAGGAGGACTGCTTCATAAGGGAAGGATTGTTTATAGGTTGGTATACTGTGCAAAATTAAGTATAGGACCAAAAACAGCCAAGACATTTGAAAGTTGGAAAGTTGATGGTAATGGTTTCCTGGGATTGGAAGGCAGACCTCCTCCGCTGATGAGCAAATAATGAGGTAAACA--------------TTGTTCTTTCAACAGGTTTGGTGCTGAGTGGAAGGAAAG s canFam2.chr35 28980743 211 + 29542582 AGTCCCAAGAAATAAAGGAAGACTGCTTCAGGAAGGAAGGGCTGCC-----------------------ATTAATTTTAGGACCAAGAAGCAGCAAGGCATTTGAAGGTTGGGAAGTGGA-GGTAATACTCTCCTGG-ATTGGAAGGCAGACTTCA---GCTAATGAGCCACTGATGAGGCAAAGAAGTCGAGACAAATGCTGCTCTTCCAGCAAGTTTGGTGGTGGGTGGAGGGAAAG a score=15687 s hg19.chr6_ssto_hap7 302341 354 + 4928567 gtATCTTATCATCTTTCTTAAACTTAAATGAAATTGGCATTCTCCATTTCTTTTGTGAAGGTAAA-----AATAATCTCAT---ATCAGTGTTCTGGTAAAAATTTT-----GTGTTTGCACGTGGAATGTAATTCGATTTAAAAAGTGAGTTTTACCTGGTGATTTTTGTATGTAAATTATAACTTAGACTAACTCTTGTTT-GGTAACTCTTCAGAATTAGAACTACAGATATCTTAGGGTTTCAAG------CAACATGTTTTGTCATTCAACTATGCACCTGACCTTCGAATTCCTTCAGTATTATTCTTACCAAACTTATTACCTTATGGCAGAATCTGTTCCAGTTGAGTATCTCCTAAATGTACAGA s canFam2.chr35 28995099 365 + 29542582 GTGTCTTGTTCCCCTTTTTAAACCTGAGTGAAGTGGGCATTCTCTACTTCCTTTGTGATGGTAAAGTGAAAATAATCTCATTGTATCAATGTTCAGGTTGAAACTTTTCTCAGATTTTGCACT---AAGGCAATTAGGTTAAAAAAGTGTGTT--GCCTGGTGAGTTTC-TATGTAAATTAATAAATAAATCAACTCTAGTTTTGATAACTCTTCAGTATTAG--TTACGGGAATCTTAGGGTTTTAAGAAATACTAATATGTTTTGTTATT-AACTATGCATCTCATCTTTGAATTCCTTCTACAGTATTCCTGTCAAATTTACTACCTTACAGCAGACTCTACTCTGGTTTAGGACCTCTTAAATGCACAGA a score=2156 s hg19.chr6_ssto_hap7 302801 61 + 4928567 cTTTTTCACCAGGTAAAAATCTAAAATTTATTCAAATACGCTCTCAAAATATTCATTTTAT s canFam2.chr35 28995464 61 + 29542582 CTTTTCTCATAGGTAAAATACCTGAACTTCCTTCAATGTTTCCTCACAACATTCATTTTAT a score=2442 s hg19.chr6_ssto_hap7 302862 45 + 4928567 GTGTTTAGGAAACATCAAAAGACTTCTGGAGGTCAGACTAGTAAt s canFam2.chr35 28995725 45 + 29542582 ATGTTCAGGAAATGTCGGAAGATTTCTAGAGTTCAAGCCCGTAAT a score=116225 s hg19.chr6_ssto_hap7 303181 3700 + 4928567 CTTATCTGTGATTTCTAAACCTGTTCTCTCCCTGCCTCCCTTTTCACTTTGAATCTTAGCAATCCTGATACAATATGGAGAAGTACCATTCTAGCTTTATGTTAAAAAAAA-----------TTGCTAAAAATGATTGGTGTTT-ATAAATTACAAACTGTTTTCTGCTGAACTGAGGTATAACTTCATGTCGGAAAGATGTGGTGCACGCATATGGGAATTGCCTAGGAAAGCCTGAGCACAGAatttactagttacgtgatcctgggcaagtttgttaatctttctgtgcctcaaattcctgatctcatagggatgttgtatggatttaaaaagtttaaatgtgtaaatcccttagaacagtgcctagaacacagcaagcactaataagtgtttattaatattAGGAAGTGATTGATAAACTCTTGGAAGTAAATGTGCTCACTGAAAaaatagtgaataagaaggtaaaggacaatgtctttggggaatctcacaattaagggtcaggaaatcaggaataactaatataagagacagaaggaccagcctaagaggtaggaaaaacagaaagtAACACCAGAATCGTTATACTCAGGCACTGGTCAAAATACTGACTACTGAGGTCTGAGAAACAGTCACTGGAGAGAGGGATTTCCTACTCCCATCAAGTTCATGGGTACTCCATACTTGATGTTTTCTTTTCTTATGTCCAGTAAGATTTGAGCTCACTCTAAAAGCTTTTCCACATTCCTCACATTCATAAGGTTTCTCCCCAGTATGAACTCGCTTATGTCCAATCAGAGCTGAGCCCTGACGGAAGGACGTGCCACACTCACTGCAGGTGTATGGCTTCTCACCAGTGTGGATTCTTTTGTGCTGCCTCAGGACTGAACTATGATGGAAGGCCATTCCACATACCTCACATTTGTGAGGCTTCTCTCCAGTGTGAATTCTTCGATGATTGGTCAAGTTTGACTTCCCACTGAAAGCTTTCCCACACTCTAAACATTTGTAAGGTTTCTCTCCAGTGTGGATTCTCTGATGGATGGTAAGGCAGTGCTGATCTTGGAAGGTTTTCCCACAATCCCTGCATTGATAGGGCTTCTCCCCTGTATGCTCTCGTTCATGAGCCCTGCGCTTACAGTTATGACGAAAGGCTTTCCCACACTCCTCACACCTGTAACGTTTCTCTTCAGTGTGGATCCTTCTGTGTTTGGTGAGTTCTGCCTTGATGCTGAAGTCTTTTCCACACTGGGGACACCCATAGTGTTTCTCCCGAGTATGGATTCGTTTGTGTTTGCTTAGGTCTGAGCTCCGACTGAAGGCCCTTCCACACTTGCTGCACTCATAAGGTCGTTCCCCAGTGTGGATTCTTATGTGTTTGGTGAGGTCTGAACTCCCACTGAAGGCCTTCCCGCACTCCTCACATTCATATGGCTTCTCCCCAGTGTGGATTCTGCCATGGATGGTAAGGGAATGCTTAAACTGGAAGGCCTTCCCACAGCAGTTACATTTGTAAGGCTTCTCCCCGGTGTGGATAAGCTGATGCATACAGAGACGGTTCCTGGTCTTGAAGGCCTTCCCACAGTCCCTGCACTCGTGAGGCTTCTCCCCACTGTGGGTTTTTTTATGTCGGCAAAGAGCTGATCTACTGTTGAAAGCCTTCCCACACTGGGTGCAATTAAAAGGTTTCTCCCCTGTGTGGATTATCCGGTGCATAGAAAGCTGATTTCTGGTCTTGAATGCTTTCCCACACTCATTACACACATGGGGTTTCTCACCAGAATGAATTTGCTCATGGAGAATTAGATCTGAGTGCCAACTGAAGTTTTTGCCACACCTGGCACATTCATGGAGTTTCTGTGCTATAAGAACTTTATTACATTGACTATGTTTTGAGTTTGGATTCAAGTTTTTACTAAGCACTTTCTGGTTCTTTCCTTTTTTGCAGGTCACTTCCTCAGAGCCTTCTTTCTCTTCTCTCAGTTTCTCCCTTATAGATGTTTCCCATTGATTCTCTAATTTGACATCCTGAACACAAACTTCTCTAACCTTAGGATCCCGGGAATCAACTTTTAGGAGACTGTTAAATTTCATCCAGTAGGCTTCTCCATTTTCAAAAATCTCTTGTTGTGAACTTGCCTTTTCATTCTCAGGCCACATCTTGTCAGCTGACACTTAAACAAGAAAATA-------CAAATGT-CAGAGGGAAGGAAATAAGTGAGATGGGAGGCGTGAAGCAATGTTAAGCTGTTTGAAGAGTAAATAACTTTTCCATGCTGGAAAAATTACTAACGTTGTGGCCAAAAGTCAGAACAGGCTGAAATAATGAAAAGTATTGAGATATTTTACACTCAGCACACTTTATAAAAAATCCTTAAAAACCTATTCCTCCTCTATAGTCTCCTAGTTTAGTGAGTGTAAACTCTATACACCTAGTCATCTAAGCCACAAAACAAAATAATCTTCAACTCTG-TCTCCCTTGTATTTACCCAGCTAACATTTTACAAATTCTACCTGTGAAGAGAGTTACAGAGGAGGTGCTGAAATGCTGATGCAGTCCCTTTTCAAGGAACTGTCTGCTTTGCTCCCAAGGGTGGGCCCTGGAGAGCCATATTTCTGTTATGTGACTCAGCCCATCTGGTTGGGGCAGATTAGATCTGCGCAATACCTGACCCAAACCAGGTCAGATTCTCTAATCCTGGACTTTAGAATTGTGATCTGACGGCAGGTAAGGCCAGCTCTAAGAGTAGCTCAGTCTTTAGCACTTAAATTTGAGAACTAGTGGTGGTGGGATGGTATTTGGTACAGAGGAGGGAATGTTCTGCCATCTGGTCCGAGAAGAAGAGAAGGTCAATTTGCCTAGAAAGAagaatgaagctgactcacaaagaagcagggaatacagttggaaacctgatggttttgagtctcttctagggcctgacacatagctgcccttaggtcccatgacacatcctgaataataaataaattcatgtttttctgcttaagctagcttgggttaatttctattgctgtcaaccaaagactccaaatacaTCTTATTAATATTATCTCTGAACTCTATCTCTTCCTCTTTATTTCCACTGCCAGTGCATTCTCACTAATTGCTATATC--CCTCAAACATcctttaccctgaatcccttctaatccatcctctgcactgcttccagattattctctctgaaaatcaagtctaatcatgtcactttttagcttaaaatacttcaatggcactccatAGTTAACCAGACAGGAAGAAagtaaagcatacggtcaagagtcctggctctagagtgagactgcctgggttcaaatcctagtatgacagttaataaatcttaatacctgtgtg------aacttgggaggatgacttcacttctcctttgcctcagttgctttatcta----------------aatgagTTAATGTATGTAAAGCACATGCCACACTGAAGTAC---TTTAATCAATATTAGCTGTTATTGT-------AAGTTCAAGTTTTGTAGTTTAAATTCCTTAAGAAAACTCCCAAAAAACAGACGTCATATCATGATCTTGCCCCTTTCTACTACTTATGAACCTCCCCAAAGCTATT--CTAAGTCCCCTGCTCTACTCACACTGAACAATTCATAGTTCATATTATTTT-ATTCCTCAATGCTTTCTCACATGTTATTCCTTCTGCCTAGAATGACTCTCACCTGTCTCAA s canFam2.chr35 28997476 3389 + 29542582 CTTATCTGTAACTTCTAAATCTGCCCTGTCT-TGCATTCCCTTCCCATCCTAATCTCAGCAATCTTGATTCCA-ATAGAAGAGGACCATTCAGACTTTAAGTTAAAAAGAGACAGAAAAACCTTGCTACAAATCATTAATATTTTATCAACTAAAACATGCTCCATG---AAATGAGTTGTA-------GGCTAAGAGGTGTGGTGCA-----AAAGGGAGTGTGCAG-CAGGCATCTGTGCAGAacttactagtcaagtgaccctgcgtgggtct---catcttttcctgccttaatgtcctcatcctctagggatgtt--atggattgaatgagttaaaatg-gcaaagcccttagaagggcggttggcacgtggaaaacactATTTAGC----ATTACTATTAC----CGATTGGCAAGGCCTGGGCAGTAGACGCACTCCT----ACAATGCTGACCAGGAAGGTCAGG--------CTCTAGGA----CCTCAGTCAGGGGTCAGGCA-TCAGGAAGAAGCG--------GGCAGGCTGGCTCCCCCGAGTGTCCGGTCAAACAG--------------------------------------------TAGCTAC----------------------GAGGGGAGGCCTGTGCCACCGTCCTCCAGTCGGTGGGCTCTCTGTGCCCGGTGCCGCCTTCGCTTGTGTCCGGTGAGATTGGCACTGACCCTGAAGGCCTTCCCGCACTGCTCGCACTCGTAGGGCTTCTCGCCGGTGTGGACGCGCTGGTGCCCCAGCAGGGCCGCACGCTGGCGGAAGGCCCGGCCGCACTCCCGGCAGCCGTAGGGCTTCTCGCCGGTGTGGATGCGCGCGTGCTGCCTCAGGCCAGAGCGCTGCGGGAAGGCCCTGGCGCACACCTGGCAGGTGTACGGCCGCTCGCCAGTGTGGGTCCGCAGGTGGCTGGCCAGGTTGGACCGGCCACGGAAGGCTTTGCCGCACTGGGCGCAGGCGTACGGCCTCTCGCCGGTGTGCACCCTCTGGTGGACGGCCAGGCAGTGGCGGTCGCGGAAGGCCTTCCCGCAGTGCGCGCACGGGTAGGGCTGCTCCCCGGCGTGCGCCCTCTCGTGCGCCCGGCGCCGGCAGTCGTGGCGGAAGGACCTGCCGCACTCGCCGCACGCGTACGGCCTGTCCGAGGCGTGGCCCAGCCGGTGCCTGGCGAGCTCCGCCGGGCTGCCGAAGGCCTGTCCGCAGCGTGGGCACCGCCGGGCCTCCCCGTGCGCGTGCGTCCTGGCGTGCTTGCTGCGGTCGGAGCTGCGGCGGAAGGTCTGCCCGCACTGGCCGCACTCATAGGGCCGTTCCCCAGTGTGCACCCTCCGGTGCTTGCTGAGGTCCGAGCTGCCGCGGAAGGCGCGCCCGCACTGCTCACAGCCGTACGGCCGCTCTCCGCTGTGCATCCTGGCATGCAGGGTGAGGCTGTGCTTGAGCTGGAAGGCCTTCCCGCATGTTGTGCACGCGTGTGGCCTCTCCCCGTTGTGCACCAGCTGGTGCAGGCTTAGCCGGCTCCTGGTCTCGAAGGCCTTCCCACAGACGCCGCAGCCGTGGGGCTTCTCCCCGCTGTGCACTCTTCTGTGTCGGCACAGTGCCGACCTGCTgttgaaggccttgtcacactggccacagtcgaagggtctctcccctgtgtggatgatccggtgcacggagagctgctttctggtcctgaacgctttcctgcactggttacacacgtagggcttttctccagaatgcaggcgcaggtgcagaatcaagtcggagcgccagctgaaggtcctgccacactcggcacatccgtggggtgtccgctccGTAAGGACGCCCTCACGTGGGACGTGTTTGGAGGATAGACTGGAGTTTTTTCTGAGGACCTTCTGGGTCTTTCCTCCCTCGCAGGCCA---------------CCTTGTCTTCTCCCAGTGTTTCCTTCCCCGGCGTGTCTCCCGGGTTCTTTAACTTGGCCTCCTGCACACAAGCCGCTCCAGCCTCAGGATCCCAGGATAGGACTTCCAGGAGAGGTCTGACTTGTACCCTGCAGACGTTCCCACTCTCCAAAACCTCCTGTTCCAAAATAGCCTTCTCATTCCCAGGCCGGGACTTGTCAGGTGATACTTCAATAAGGAAATAAAAACCTCAGATGTACAGAGGTGGGGAGCCACGGGAGACGGGACAGATGAG--AGGGTGGAGCCGTTTGAACAGAAGATGAC-TTCCTGGGGTGGAAGAGCTGGTACCCTTATGGCTAAAGGCTGAGGCAGGCTCGTATCGGGAGAAATACTGAGACATTGCAGACTCCGTGCACTTTAC-AAAAATCTGTACAAACCTACTGGT-TTCTGGAATCTCCTGGTGTAGTGAATGGCAAATCCATGCGCCTAGTCACCTCAGTGAGGAAACTGAGTCACATCCAACCCTTCTCTCCCTCAGATTTGCTCAGCTAACATTTTACAAATTCCACTTGTGA--TGTGCTGCAGAAGCTGTG----------------GCCCC----CAGGGGCCTGTCTGCTTTGC------------------------------TCTGCAGTGTGAC-CTGCCTGCCTGGGTAGAGCACATCAGGTCTGGGCCACCCCTCACCCGAACCAAGCTAGACTCTCT--TCCTGGGCTCTGA---------CTGA--------------GGCTCTGATAGCAGCTGGGTATTTAGCACTTCAGCTGGGGAGC--------------CTGCACACCGCCCAGGGCAGGGAACATTCTGCCATCTGGACCGAGAAGCAGGG---------------------------------GACCTACAGAGAGCCAGAGGAGACAGTGGGG----TGA------------------AGGGCCTGCTGTGGTCCTGCTCCCAGGGTCCATGACAC-CCCCGAGTAATAAATCTATTCTTGCTGTTTTGCTTAAGTTAGCTTGAGTTAATTTCTACTGCTGGCAACCAGAG--TTCAAATGACTCTTCT-----TCTTTTCTCAACTCTACCTCCTCCTCTGTATTTCTGCTGC---GGCATTCTTGCTAACTGACACCCCAACCCCACCTGTCCTTTTATCTGCTTCCCCTCTAATCTGTGCTCCACTTTGCTTCCAGATT----TCTCTATAAGTCAATTCTAATCCTGCCACTCCTCAGCTTACAATA--TCAGGGGCACT----------CCAGACAGAAAGGAGgtaaagcatacaggcaagagccccagctctggagtgggaccacctggactgaaatcctag----------------ctctgacacctatgtgctgtgtagcccaggagg-tgactgcatctc-cctctgcctcagggggcttgtctataagatgggagcatttaataagctaatGTGCTTAAAGCACTTGCCACACAGACGTGAGTGCTTAATCAATGTCAACTTCTACTGTCAGAATAAAGTTCAAGGTCTGTAGTTTATA---------AAAACCCCTCTGA------------ATAGTCACCTTGCCC-------CTGCTCCTGCA-CTCCCCATACCAGCTGCCTGGAGCCCTTGCTCTACTCACGCTG-----CTCAGAGTTCATGTTTTTTTCCCTCCTCAACATGTTGCCACGTGCACCTCCCTCTGCTCAGAATGCCTCTCCCCTCTTTCCA a score=2999 s hg19.chr6_ssto_hap7 306881 51 + 4928567 TTTATGAGCACTGCAGTAACTGACACACAGAAGGGTAATAAATATTCTGAG s canFam2.chr35 29001601 51 + 29542582 TCTCTGAGCATTGGAGTCACTGATACACAGAAGGGAGATGAATTCTCTGAG a score=13131 s hg19.chr6_ssto_hap7 307260 695 + 4928567 CCTTTTTTGAGGGCCAAATTGCAAAAA-TCTATTAGATAGGTTGCAAAGAACCAATTAGATAATAACAGAATAATTGCCCAAATAGTTTGTCACTGTTTCAATTTTCTTTTCCTTAAGTTTCCTAAATGGGTTTCCTTTCTGGGCCCTTCGACTGGATGATCCACCACTGAGAATGTTCCATAACCATTATGCCACATGGAAGATCAGAG-------GGAACTGAAAGTTTCTCTATTACTCACCTGGGTAGGAGCAGCTTAGGGACTCCCTGTCCTGTGGATCCTGCACACAGGGGTCTACTTCTCGCTCCAGATGAGAGATTAAAGGAGGTTTAGGAAATGGAAATCCTGGTTGCAGAGAAGAAATAAGTGTGTAGAGTAACTTATAACTTAATAACTTATAACTTAGCTAAGC----AGCCCTGATCCTTCTGTTTGTATATGAAAACAGGAAAGAAATGTTAATTTAGATAGAGAAAAGGGTTT-TTCAGGGGTCTAGTAACATGTAAAAGAACATGTTTGGGGACTTTCTCAGAAAAGTCACACTCAGAAGGAAAGAGAAGTTCTGGGAAACAGTCATTTGGGTGTGCTCTCCTGTtttttttttttttaattttattttgttttactttaGGAGAATGGGAGTCTGGTATAGGAAGACTATCAGTTTCAGGCACATAGAAGGCAGTTCTTGACTAGGAGCGG s canFam2.chr35 29001652 539 + 29542582 CCTTTTCTGAGGACCAAACTGCAAAAAGCCTATTAGAGGGGGTACAAAGGAGCAATTAGGTTATGATAGAAGAACTGCCCAAGTAGTTAGCTGCTGTTT--ATTTTCTCCTCTTTA------------GGGCTCCCGGGCTGG----TGAGGACAAATAACCCAGCAGTAAGAACATTTCTCTGACAACCTGCCCTGAGGCCTAGTGGGGTGGTGGTGGTGCTGGA-GCTTCTCCATCACTCACCTGGG---AAGCAGCTCAGGAACCCCTGGTCCGGAAGG---------CAGGGCTCGGCCCCTTGCTCCAGCTGGGAAATCAGAGGAGGCTTAGGGAAAGCAGAACCTGGTGGTGAAGGAGTAG-GAGTGCTCAGAGCA------------------TGTAACTGTCCTAAACGCCCAGCCTTGACCCCTCCGCTTACACAGAGAAACAGGAAAGAAATGGCCATCAGGGTAGAGAAAAGGGTTTGTTCAGGGGTCTGGTCATGGGTAAC----CATGT--AGGGACATTCTCCAAGGAGTCCCCCTCAGATAGGCAGAGGAGATCCTAAGAACA--------------TTTCCCTGTTCTT---------------------------------------------------------------------------------------------------GCGG a score=6083 s hg19.chr6_ssto_hap7 308079 907 + 4928567 TTATCTTGCTATGTAATAGAGGCAACTCAAAACTCTTAATTTTTGGGCAAGATCCTGATGATAAAGAATAAGGACTCTTTCAATATGAGACCTTATATACATCaataaataaatcaattaaataataaaaaaaGAAGGTAGAAAGCA---TTAAGTGTAGGGAAGGTCCTTACCAAGTGATACCATGTTCCCATAATTTTCCAACATCACATCCTTATAGAGATGCCTTTGAGCGTAGGTCAGACACTGCCACTCCCTGTTAGTGAAGTTCACAGCTACATCCTCAAATGTCACTGA---------CTCCTGAAATAATATGCTCCTGCTATCCTGGAGAAAACGCCATAGTTTCCTCAGGAAACAGAGGCAGAAGAAAGGAATTTGCAAGGAGGAGGTTTATAGAAGTGAAAGGCTCTTCCCTTTTGGTGGGTATGTACAAATG---AGATGAAAGGGAGCATGGGGTTTTGATAGCAAAAAATAATGAAAGAGAAAACAACCCACAAGTGGTTTATCATGCAACAAAATGTTCCTTATGAGAGGGAGAACATTGATTTAGGAGTTGCACAGCCAGAGAACGCAGTGAAAACAAGGCCATATTTTGGAGGTAGTGATGTATTTTCAAGGAGGAGGAAAGGGGCCTCAGCTCACTTGGGCCTGGCTCATTAGTGTGAT---------ATCTGCTTGCGGCAGGTT------TCCTTGGCTTCCATCTTTAGTGAAGGCAGGATATGGAGCAGGTAATAGAGCTGAGGGAAGATAAGT--AAGCCAAGA------GTCAATATAGCACAGTATTAATGAAATCTCCTGCATTCGTCTTCTCTTCCTCAAATGTAGAAGCTTCTGCAGCTCTAACCTAGGGCTTTAGGCTACTGCCTTACAGTATCCTTCCTCTTCATTA----TTTTTCTAGTCTCAACTTCCAGTGTTG s canFam2.chr35 29002191 703 + 29542582 TTATTTTGCTGTAGAACAGAG--------------------------------------------------------------------ACCTCACACACATGGATGAACAAAACAAGTGAAAGA-AAGCGGAGAGGGGAGAAGGCGAGGCCGAGCCCAGGGC-TGTTCTTACCCACTGCCAACATGTTCCTATAGTTTTCCAGCATCACGTCTGTGTAGAGGAGCCTCTGCATGCGGTTCAGACACCGCCACTCTGGGCTGCTGAAGCGCACAGCCACGTCCTCGAAGGTCAGGGAGGTCAGCGGGTGCCGGGGCAGTGCAGCCGTGCAGTCCTGGGGGACAC------------------AGTAGAGACA------------------------------------CGGAAGGCGATGAC-------TGCGTGTGTACTGAGGCAAGGTTGAGAGGAGGTGCGGGTTCCTGG-----------GGTGGAA-----------CCACAGGGGG--CATCAT-----------------------GGGAGCAC-CTGATTTGGGAGGTGAGCAGGTAG----------------------------CTGTGGCGGGGCTGTGTCTGCAGGGAGG-GCGTGGGAGCCGCTGCTTCCCCAGGCCCAGCTCCTGGCTGTGGTCGCCCTGGGCTCCTCTCTCGGCCGGGTTCCGGCTCCCCAGCTTCCATCTCTGGCAGCAGCTGGATGCTGAGGGCTCGGCAGGGCTGAGGG-AGACAGGTGGAGGGTGGGGTGGGCTGTCAGTGTGG--CAGTGTTCATGCTTTCCTCTGCCTCCCCATT-------------------GTTTCTGCAGCT---------GGACACAGGC-ACTG------GGTGCCCGCACCCACCACCAGGGCTTTCCCTGGTCTCTCCATCCCACGATG a score=8831 s hg19.chr6_ssto_hap7 309153 384 + 4928567 TCTTCCTGTATTTGAATACTGAAGTCATTTCTTCCA-AAATACTTGGGGTAGAAGGAGGGTGAAAAAGAgtgtgtgcatgcacgcgtatgtgtgtgtgtgcatatgtgtTGAACAGAAGCATCCAGGGATAGGACCAAAGCTTATTTTTTCAGGTAACTTAATGGCTGGTCTACCTCCAGTTAGTT-------ACAAAT--TTTTTTCCTTATTCCTCTTAGAGAAGAATCATT--CTTCCC-----GATTTTGCACATTTTTCCTACTAATTCCCTAGTACTGAGTTATCCTCCCTATGTCAATATAGTATAGCACACAGAGCATTTTAAAATGCAAAAGAAACTTTATAAAGAGTGTCCAAGTGTTCAGGTATAATCCATA-TGATTGGGTGAGAAGTAG s canFam2.chr35 29003144 321 + 29542582 TCTTCCAGTATTTGGACGCTGAAGTCATTTCTTCCAGAAAGACTTAGGGTAG-----GGATGGGCAGGGG----------------------------------------GCACAGAAATATCCAGGGACAGGCCTAGAGTTTATTCCTTTAGGTAACTGCAGGGCTGCCCTACCTCCAGTTAGTTTCTTGGAAAAAATAATTTCTTCTTTGTTCCTCTTATTAGAGAAATACTGCCTTCCCCCTGTGATTCTG----TCTCTCCTGTTAATT-CTGAGCATGAAGCCACCCTCCCCACCCGGCTGGAGGACAGCACACACAGCTTTTG-------------------------------CCATCGTCCAGGTAGTGTCCACACCGACTGGATGGGATGTAG a score=9008 s hg19.chr6_ssto_hap7 309846 427 + 4928567 GTTCATATTACTAATTAATAGGGCCTGACTTTATTCCTTGCAGGCCAGCTCAATCTTTCTGTAGCTTCAGTGTTTAAGGTGCCTTATTTTTCTTGATAGTTTATCAACACATCGCCAAGTCCAAATCTGAATAATTGCTGTCTGCTTTTAAGACAC-------------------CAGCAGGGTCAAAG------------TAATCTATTGGTAAGATTTTATAATCACCCTTTGGATTTAGACCTCCAAGACTATCATTCCATTTTTACGA-AAAACCGATTTAGAACCAAGCTGATTTCTTTTCACTGAAATTGCCCAAGAAGACTCTTCTTTAGTTTCAGCTACTTATAGCTTTTGACCAAGACCAAGGCTGC---ATCTCAGTCATG---GTGGTTCCATACAGTTTTTCCACTGTCTCACTCTAAAAGCTCCGAGCTCCTTTATAA----CTGTCTCAAAAAGT s canFam2.chr35 29003465 425 + 29542582 GTCCACATGGCTAGTCCACA--ACTCAAATTCACTTCTGCTGGGCCAGCTCTACCTTTCTGTAGCTTCAGTGTTTGCAGCAACTAACCGTTCTAGAAAGTTCATCAACACATCCCCAA-TCTGAGTCTGAATGATTTCT-----CTCACAAAATACGGTGTGTGTGTgggggggggggcgggggccgggggggggcATTAATCATCAATTGGGAAAACCCTGGGATTACCCCAGGCCTTTGTTCCCCAAAGGCC----TTCCAATTTTACCATAAATTCAATTTAGGAGCAAACTGGTTTCTTCCCATGGG----------------TCTTCTTTGGTTTAGGTTACTCTCCGTTCTTGACCAAGACCTGGGGTGTTAGTCCTCAGGCCCGTCTGTGGCTCCA--------------TGTCTCGCTCTATGAGCCC--AGGCGCTCTGTAATTCTTTGTCACAAACAGT a score=15396 s hg19.chr6_ssto_hap7 310273 552 + 4928567 CTAAACTCATCTGGATGGCACACAACTCACAGCAGACACATGTTTGTGCCTTGTTAATGTTACATAACAGTTCTTTTCCTTATAACATTAACACACTTAAAGCTCTCAATTGGAtgtttt-------------caaccattattttattatgaatattttcaagtgtatagaaaagttgaaaaaattatatagtaaatatccatataccaatcacttacattccacaatttacgttctgcaatatttactttatcacatacttatccatttatctattcctctctctgttcattaatgtattttattttttgaatcatttcaaagtaagttgaaagcatcagtacacctcacccctaaacagtttaacatgtatatcattaactggaagttcaacatttgtttaccttct--ttttcgaggtaaaatttacatataatgaaatgcacatgtcttaaatgtacccttagagaaactttgacaaaagcatacccctatgtaactcaTTCCCTACT------------------GGTTTTTACCATATCTTCTTCACA-ACTGGGAAAG-TCTGTC-ACTCATAGTGATTC s canFam2.chr35 29004072 527 + 29542582 CCACACTCTCCTGGCCTGCACACAGCTCATAG----CACATGCTAGCTCT-------------------GCTCTGCTCCTTGTGACATCAA-AAATGTAAACCTCCCAACTGGAAGTTTTTTTTGTTTTTTTCTAATCCACATTTTATTATGAACATTTTCAAATATACAGAATAGCTGAAAGAATTGTTTAGTAAGCATCCACA-------CACTTACCTTC--------ATGTT-TGTGATG--TGCTCTCCCACTTACCTACCCAACTAACTAGCCCTCT--------ATTAATCCACTGTACTTTTTGCTGCATTTAAAAATAA-TTAAAGACATGAGCATACTTCACCCCACAACACTCTATGGCACATATCATGGACT-AAAATTCAATATTTGTTTACATTCTCATTTttgaggtaaaatttacacacagtaaaattagcaagtcataag--------tagatgagtttcgac-aatgcatacctgtatttaaccctatttcccctccagatacaTCCCAGTTGGATTTTTACTATACCTTCTTCACAGACTGGTAAAGTTTTATCAACTCACAATAGTTC a score=2120 s hg19.chr6_ssto_hap7 310827 31 + 4928567 AAGCTTTATTTTTTAGCTTTAGCTTTAGAAA s canFam2.chr35 29005468 31 + 29542582 AAGCTTTATTTTTTAGCTTCATATTTTGAAA a score=49012 s hg19.chr6_ssto_hap7 312168 2265 + 4928567 TTAATGAACAGATTTTTGGGCCCCAGTGTGGCATTTTCCACCCACTCTGTGTCCTTACTACATTCTCAGCTGCCGTGACTCCTGCCACAATCTCCTGTGTATCTCACCGCTTTCCTGAGGGAGCTGGGTATCCTGGCGGGTCCAAAGCAGCTGGCTTGGTGGTCCTGAACTCTCATCCAACAGCACAACCTATTGCAAGACACAGAATGAATTCAGGAAAGTTATGAAGGTGAGAAAAATACATAGGAAGATGCAAGCAACCATACAGGTCTATCCACAGAAACTGTCTCCCAGAAATACCAAAAGAAGGGAGAAAATAATGGACTCAGTTCCTAAT--ACCTTATGAAAACTAGAAATGGC-----------ATCTACAACTACAAAGCTTTAATGATCACCAGGTCAAGCAGCAAAAACAGTATCTAGGAGGAGACACCTCCAACAGTATCTAGAGTCAGACACACCTCCACTCACACTGCTTTCCTTCTTTCTTGGACTCACTTCTCCTTCTTCCTCCTTGTGATGTATCACAGACCCTCCTCTTCTTACCTCCTGCATCTTTTTACTCAGGTTTCTTTAACAGTCTTCCACTGCTGTCCTGGTTTCTTCCTACTGGTCAGATCCAGTTCTCA-AACAAGCTGTGAAGTGGCTCCAGTTGATGCCAGCCTCCTTTGGAGAACACATGTTTTGGTGG-TGCCAGCCAAAGGGCCCTTCTTGACCCACAGTGCCGCTACTGTTTGGCTTAATGTGTCAAACACTGCCCTGGATTTGGGGTTCATTAGCAACACTAAACC-GCTGTGATCTCACATCTTGTTTCCCTGCATATTTGGTG-AAGGGAAAAGAGGAATGTGACCACAGGAAAAAATAGGGAGTCACT-----------------GAGAACCTGAGGCACGAAGTCAAACTGAAAATGTGAACGTATCCAGAATacaatctcaacggctaccacccttgtctgagccaccatcacctgctatctcccctcctttccattactgcggtagtcttctaactggtctcctttcttcaatccttgccttcctcct-ttcttaatagggcagtctgagtagtccgtttacaacttgagttggatcatttcatcgctctgctgaaaactctccagtggttcatacttaaaataaaacctgaagtccttaccgaggtatacaaggccctactgaatgtgcccgtgacttctaacttcctctcctgctcacccaaaataagagctgaagtcttaagagtggcatacaagtctacaggatgtg-----tcattctca-acaccttctactcttctcccactccctcaatcttcagccataccgaccttccttctctttcatcttagggcctttcca----ttggctgctcccttcaccttaag-----cgatctccatggctaataatcttgcctccttcaagtgttttcttataggtcatcttcccaaggaggtctactctgagtgccttatttaaaattgcagcctatcccctccttccaatcctgatgggccttaccttgctttacatgaattcttcttttcctctatagcactttataattttccagtatggtgcataagttacttattaatatatacattgtttacggtggttctaccttcgctaaaatctaggctcttaggctccatgagggcaggaatttttgtcgtcttgttcacagttgtattctcaacgcctaaaacagcgcttgcaatagtatgtgctggattaaaaattagctgactgaatgaatATATGAATGGATGCTGTAGAGAAGAATAAAAAGAATGGGTCAGGAGGCGACAAGAGCAAGACTCCGGTCCCAAAAAAAAAAAAAAAAAAATGGGTCACGAGCCCCTGGGAGGAGGTAGGGCAAATGGGCGGGAAATGCTCATTTTGGGGAATGGCTTCGAGGGAGGAAACCGCAGCCGACTCCCTCCTCAAATATGGCCCCAAAGACCCGCCCCTGC-CTGCAACCCCAGGGGCCCGGGTATTTAGGTGAGGGGGGCGACGGCGGCACCGGACTCCTCTCCTCTCAGCTGCAAATTCCGACCCACGACGGCCCAAGGCACAGACCTTCCCGCCGGTACTCTCCCCAAGAAATGAGAAACAGAAATATACAGAAGCTCCACTTCCTAGTCCGCCAATTATCATTTCCGGTGATTTTCTAGGAAA---GGCGTCAACTCTCTGGTCTAGGCGTTCCCTTAAACTCTCC---GCCCTCCTCCTCGCG-----GCTCAGCCTTC-TAGGAGTTTGCGTGCGTTTATGGCCTGTGCAAAGGGGTTGCA s canFam2.chr35 29005514 1981 + 29542582 TCAATGAGCAGATTTCCATGCCCTGGAAGCATGTCCTCCCACTCCCCCATGTCCCAGCTCTGTGTTCAGCTGCCAT-CCTCCTGGCACAATAGCCTGTGAGCCTCACCTTTTTCCTGCAGGGGCTGGGCACC---AGGGATCCACAGCAGC------GCTGGTCCTGGATGCTCATGTGATGCTATCACCTATTGCAATGCACAGGA-AAACTCAGGCGA----CGGAATGGAGGAAAATG-------AGCTCTAATCAACTGTAAAGTTTGGTCTATGGAAATCATCTCCCAGAAACACCAAGAGGAGAGAGAAAATCAGGGACTCAGTCCCTGATCCACCTTAAGCAAAACAGAAAAGTCTTCCCATTATTCTCTACAACTGGAAGGCTTTCATGGTTACCAGGCTGTCCAGGAAAAATATTTTGAAGCGGGAAACTTCT------------------------ACCATTGCTCCCCCTGCTTTCCTTTTCT---GTACTCACTTC---------CTCCTCATGATATGTTGCAGACCCTCCTTTTCTTACCTGCTGCATCTTTTTACCCAGCTTTCTTT-ATGGTCTTCCACTG-TGTCCAGATTCTTCCCAGCTGCTTGGGTCAAACTTCCAGAGTCAGTTCCGACTTTGCCCAGG-------CAACATGTTTTGAGG------TGGCCTGGTGGATGCCAGCCAGAGGGCCCTTGCTGACCCACAGTGCAGCTGCTG-TTGGCCTGATGTGTGACACAATGCCCTGGATTTGAGGCTCATCAGCAGCATTGGGCCAGCTGTGGTCTCACACCTTGTTTTCCTGAATATTCCATGAAAAGGAAAAGAGGAAAGTGATCAGAGCAAAAAGAAGGGATCTTTTTAAAGGATTGTCTATAGAAGAAGAGGGAGCACACAAAGACATGGAAAATGT-CATGTATCTGGAGTacaacctccatagctaccaccccgatccaggccatcgccacccg-------ccttgctctccatgatta----------ctgactgttctccttgcttctatccttcccctttgcctcttctcaatacaaca----gagtggtgtgcttaacacataagctagatgatttcac--gtctacctaaaacctccc---------------------aatCTCCAGTCTACACCGTGGTATGCAAAGCTGTTATACATGCGCACATCGCTTCTAACCACcttcctcatttattcagaataagagcttaagtcttcagg--ggcatacaagtctagaggatgtgtggattcatattcatgccccttctactctcctc---cttcaacggtcctcagtcacacaga----ctttctcgttcacctcagggcctttgcactggttggctgtcccttccacctCAAGGCAAATGATCCTCAAGGCAAATGATCTTGCTTC---CAAGGGTTCGCCTGTA-CCCATCTTCCCA---AGATCCACTCCAGGTGCCCTACCT--GACTGCCGTCTACTCTCTCCTTCC-ACCCAGAC--GCCTTACCTGGCTTTCCCT---TTCTTCTGGTTTTCAACAGCACTTGACCACTTTCCAACATGG----CAAGTGACTCGGCA-------------CTACGGTCGGCCT--------------------CTTCAGGCTCCCT-------------------GCCGTGTGCCTGGCTGTGCTTCCAACACCTGCATCAGCGACCGCACCCG-------------------TGGCTCGATGAGAGAATACAGGCAGCGACGCTG--GGGAGCAATAA-----------CTGGGGGC------------------------------------ACAAAAAGGGTCATGGGCTGCTGGGCGCGAGAAGAG-----GGGAGGGAA---CCC--------GAACACCTGCGAGAAAG---------------TTCCGTCTGAG--------CGGAGAGCCCGCCCTCCCGCTGGCGCCCCGGGGGCAC-----------TCGGGGAGCAGCCAGGAGCTCCCGGCG-----------GACTGC-----CCGACCCACACCGGCTGGAGG--CGGACCTTCCAGCCG----TCGCCTCCCGGAACCGCCAGCA-AACTGCAC---AGCTTTACTTCCGAGTCGCCCACCAGCCACTTCCGGCGACCTTCTAGGAAACGCCGCCGCCACTCGCTGGTCCCAACTTCCCGGGAGATTCGGCCGAGCCTCCTACCACGTGCACGTACCCCGCTTTCGCGAGAGTT--CCTGCGGGCACGAGGGGTGC--GGGGGTCGCA a score=8241 s hg19.chr6_ssto_hap7 314482 276 + 4928567 TAGGAATGGACAGAAGTTTTGT--GACAAATATATGAAAAAGTTACTTTTAAATATTAACTAAGAACAC-----AAATaattgaatgt-ctttttcaaaagt--aaagact----------attttaagcccatgcagaagtcgaaagaagagtataattaacccatatatacccatcatttacatttaaaaatacataaaattctgccacacttgtttcatccatctccat--tttttcttgctgaaacgtttt--aaagcaaaccccaaatatcttactttcaa---------cttcattatgcatt s canFam2.chr35 29007576 291 + 29542582 CTGGAGTGCACGGGAGTTTTGTGAGATAAATCTGCGAAAACGTCACTTTTAAATATGAGCCTGAAACACAAGATAAATAACGGACTGCACTTTTTCAAAAATCGAAAAATTCGTTATgaaaaatttaagcctgtacaaaagttgggagaaga--ctaatgaacccaggtgtactcatccctcaaacttagta----ataagattctgccgcac---------ccacccccaccgtttttcttgctgaaatatttgaaaaagcaaaacccgaacatt---atttcaatattatgcttttcagaatgtatt a score=23796 s hg19.chr6_ssto_hap7 314775 629 + 4928567 tttcctacagaatcacaataccattatcccatttaaca-----aaataattcctggttatcatctaataccaagtccatattatatttccctaaatatatacatatgcttcttacatttgttttctatttcattcaagatctaaagttccagtatttaatttgggcatgtgtcttaattctttt-aaaattcacatctgaactagttcctccttccatcctcctcttcgtcttcccctcatatagtcaactaattgaacaaattgggacatttgtcctgaatgttctacatgctggctttgtctatttgtgtccccattttattagtttctctagcctcatatttcctgtaaaacttgatgttacctctaaaggtttgattagagttaggtttaactttgttagtaagaatccttaggtggtgctatgtactttttgccacacatcaggaagcatataatg----------------tttttgatgctaAGATTGACCAGTGGGTTTAATACTTGATAGCTGAATCCTTCCATGTaaactttcccactggcttttaatctgatagattcagccacc------------------ccatttcattagagtttgtaaaattgtaatttttctaattcaataa-ttttttcacatttattagttagaactcct s canFam2.chr35 29008673 629 + 29542582 tttaaaacagaaccacagtgccattatcccacctaaaaaatttaaatgattcctggttaccatctagtactgagttcttactaaacttgcctaaataaata------------aaacgtgctgcttttttgaatcaagatccaagtctaca-tact---tttgggt---tattttaatttttttgaaaatttagatctataatagttcctccttccgtgtctc------actaaccctcgt----tcccccaattaaataaatttgt-catttgtcccgaat-ttttgcatgctggttt----tatttgtattttcatttaattcatttctctagccttgtatttcctgt-taactagatgctagctctaagaatttgatttgagtttgatttacctttatgggtaagaattcttaggtggtgct-----ctttttgctttatatcaggaggcatataatgtctaACTATTCCACTCTCTATGATGCTAAGATTGATTTATAAGTGCAGCACTTGATAGGTGGATCTCTCCATGTAATAttccccatcaacctttcatttggtgctttcacctactgatcttgacctaaatcaaccatttcattagggtttgcaaaatggtggtttttctaacttaacaatttttttcatgtttatgaacaagaatttct a score=10429 s hg19.chr6_ssto_hap7 315404 299 + 4928567 ctataaagaaaaactttccttcatcaatttagcaatttagggctatttggttatcctgaaatgtagtttgtacaggaaagaaagactgtttaattttcaacataattgccaattttcagaaaaagcagttg--tgccttaggtgccatcaatggtaaccaCCTTACAAAAtgtgatagccatcctataaaatggctagctgggccctactgtccagcattcacatccttgtgtagcccccttccacattgtaccagggttggtttgtgtaactga-atgatctggtaaaagtgatgctatgt s canFam2.chr35 29009506 263 + 29542582 ttttaaagaaggattttctctcaacaacatataaatttagggctatttggttatcctgaaatgtagttcttacaggaaggacaa--tgtttacttttcagtttaattgccagtattcagagcaa-tagttgtttaccttagGTGCCAT--------------------GACATGTtggccat----taa----------tgagccctgccttctgg-attcat-tccttgtgtagctctcttgcacattgtaccaaagctgatgtgtgtcatcggtccaatatagcagagatgatgttatgt a score=12550 s hg19.chr6_ssto_hap7 316023 393 + 4928567 tacattatctctaatattaggttataaaataatctacggcttctgttttggtctgtttttc----tttcgtagatcacacacccttgggaaagccaaatgccatgttgtaaggagaggcccaggtggtgaggaactgaagcctcctgccagcagacacatgagtgagtttggaagtggatctttcta-ccttagtcaagctttcagatgactgcagccctggttgatgtcttgggtgcaaccttatgacatacgcaggaccaccagccaagctgctcccagatttctggtcttcagaagctgGGGAATGGCTTTGAGGGAGGAAACTGCAACAGATGTTTGGTTCTAAGTTTTATAACTA-------ATGCAAAATTTTGT--TTTCTCTTTTTGTGCATCTAATGT s canFam2.chr35 29009769 372 + 29542582 tatgttacttctaatgttaagttataaaggagactgtggcttccaaatttgcctctctctccctgcctctcagatcactcactctgagggaggccagctgtcctatggtgagaagtagcccatgtggtgaggaactgaagccccctgccaacagccaagtgagtgagtttaaaagtgcatcctccagcccccagtcaagccttcagatgaccgcagcacag-----------------------ctaacagaccccaaactaacagctaaactgttctcagattcctgatctgcagaaactg---------tatgaggtaataa---gcatctcatgtttgatcctaaatttggggggtactgtgttatgcagcaattgataattTTTTTTTTGGTTTGTTTTATTT a score=29906 s hg19.chr6_ssto_hap7 316548 675 + 4928567 acacatggatttaaaaaaatacattcaatgagtctcaatcaattgcagtagttattctttttaatgttcaaattatttcatctttggtcagtgggagtccctttattttatctcctgtgttcttttcatccaactctaagcgtcttt----------------------------gcttttttcctttatggcaagataa-atgtttcagacacatgtcatacatttcctgcctcagacctggaa----tcagccatttttccaaggtgttctggtgc-tttcagtggggGCAAGGATTGCATACCTTTGTGAATAGTCATGGTTAGCTGTTTTAAAAATGTATCAAAATGAAATAAAATTTGCTTAATTAtgagattaaatcctggctaccccactcacaatgtgtgtgtatcataccttagaccca--------------ccctagtttgcctatctgcaaaatgggtccagtgtaaatacctaaatttcagagccgttataagga-taaattagttaatacgtggaaatcacttaacacattgcctggcaTCAAATTTCATGATGAGA-----ATAACTGcaaacctggaagatactataatggtaatgaggtatactttcttcattttatacttgagaaaattgaggcccaagagattaaaaacttgTTTG----TACAAAAGAGGATAAA-ATTAGAAGAGAATCTAATGATTTCAGACTCTTGGATCT s canFam2.chr35 29010720 727 + 29542582 actcatagatttttaaaaa-acattcaaggagtattaaccaatt---gtagttattatttttgatgtcc-aatgattctgtctttggcaggtgggagtgcctttattttgactcctctgtccttttcatctaactctgaaagtcttggatagctttttttttttttttttttttagctgttttactttctagcaggacaagatatttcaggcttattttgtatatttcctgctccatttctacaaggcctcaggcatttctccaaga-gtcttggttcttttcagtggggagaatgACTGCATATCTTTGTGAATAATCACAATTATCTTCACCTAAAGCATATCAAAATTAAATCAAATTTACTTAATTAtggggttgaattcaggttaacccacttggtatctgtgtgtgtgagacccta-accaagttctgtctcctgtccccagtttccttatctgccaaatggatccagtataagtacctgacttttggagttgttctaaggattaactcagataatatactgaagtaatttaatacactgcctggcCTCAAATTTTATGATtagagcaatagaattgcaaatctggatggtaccatagtgatcattaggtacaattccttcatttcatgcttgagaagacaaaggcccaaaagagaaaaaatttgcctaaaactacaaagGAGAACAAAGAAAAGAAGAGAAACCAATGACTCCAGAGTCTTGGATCT a score=4506 s hg19.chr6_ssto_hap7 317224 87 + 4928567 ATACCTAGACTACTTTGGATATAAATGCAGCCTTTCCAGCCCAGTCGGGTCTTCTATTTATTCAAAGACAAAGGAGGTAAGAAAATA s canFam2.chr35 29011741 87 + 29542582 AAACCTGGGTTATTTTGAATGTAAACACAGTCATTACAGCCCAGTCAGGTTTTCTATTTATTGAAAGATAAATGAGTTTAGGCATCA a score=6841 s hg19.chr6_ssto_hap7 321577 309 + 4928567 AATATTCTATGGGGCAATAAGCAGAACTATTCAGAAATGATCCTGGGATCTCACTCTAGATTGCCCAGGAAATGTGCTAGCTACAACTGGAGTTTCCCGTTCCTCTTGGAAAGAGGGGCTGCACCTACGTATAGCTTTGCATGAGACCAGCTGCTTACACTTTCTAACACGAAGGGGCTGCAACTGTCCATAGGATGCATGGTCTCCAGGTGTTGGGCATCT--GGTCCTCAGATGCTTCCTCAGCTCTGCTAGCATCTAAACCCAGACTGCCCGGCAATCAAGTAGTCTGCTTGTTGTCTTACTGAAAAG s canFam2.chr19 41655855 281 - 56771304 aATATGCTGTGGTACAATAAATAGAACTATCTGAAAGTGGTTCTATAACCTTACTCTGGGTTAACTAGATAATAATCTAACTGAAATGGGGGTTCCTCTTTCCCC--AACAGGAATAGGTATACCCAAGCTCAGCTTTTTATAAGAGTAG--------GCTTCCT------------CCACAA-----CACAGATTGTAAAGTCTCCAGGTGCTAAGCAGCTCACATTCTCAAACAAATTCTACCCATAGCTACCCTTTAAATCCAGACTGTTTGAC---CAAGTAACCTGTATCTTTTTCCACCAAAAAG a score=2488 s hg19.chr6_ssto_hap7 321982 134 + 4928567 CACCTCTCCATGGGATTATGAGAGGATTGAGAACTCTATGCCTCT--TGTGCCTG--------ACTCTTGCTTTCTAAGTTTCCCCAGTAAATCTTATTCCCATTCCTTCGTTCATACTATGTGATGTTGTAGAATTTATTGCA s canFam2.chr19 41656273 135 - 56771304 CACACTTGCCTGGGATAGTGGGAGAATTAGGGACT-TGTGCCTTTTCTTTACCTGCTGTCTTTAGTCTTG--TTTTACATTTCCTCAA------TTAAGCCTATTCTTTAATCTCTTTCATGTGGTATTAAAAATTTCATCCCA a score=9598 s hg19.chr6_ssto_hap7 334950 287 + 4928567 ATCATAAGCCCT-ATTACTCCCATCTTCCTACTCAATTACTTCATGTAAGCTGTGGCTTACTCTGTCTTTGAAATGACATAGCAAGGGCACTATAGATATGGGGAATCTTTCACTTGCAGAGAGGATTTTCAATCTCTGAAATGGCTGATTTGCAGAGAAGTGGAGTCGTTTATTCTCTAGCACAGGGATTTCCAGATTTTGAATGTATTTACCAGTAAAACAAAGTAAAGCAA-----AGTAAAAACATAAGCTTGCTAAATTTTC-TTTTGTCATTTAAGAGCACCAAGCTT s canFam2.chr35 29033742 284 + 29542582 ACCATAAACTCTTACAAGCCCCATCACCCCACCCAAATA-TGAAGGTGGTTGGTGCCTTACACCAATC----AATCACAGAGCAAAGGCACCATTAATGTGAGTA--CTCTCATGTGCAGGGAGTATTTCTAGTCTCTAAAATGATCATCTTGAAGTGAAGGGGAGT---TTTCTCTCCAGCATAGAGATTCTCAGAATTTGAATATATTTACCAGTAAAGCAAAGTAAAAAAATATTGGGAACAACTATGATATTGCCAAATTTTTGTTTTGTCAAATAAGAGCATAAAGTCT a score=78910 s hg19.chr6_ssto_hap7 335251 1265 + 4928567 CTTTGGATAAATGAATTGATTTCACTTCTCTTGATAAATGCCAATATTTCTTTAGTGCTCTACATTCTACTTTTTTCCATCTAATTCATGATTCTGCTGAAGATTTTTTCATCCACAGTATTCTCTTCAGTGCACTCTTTACATCTTTGTTTCTTAAAGTGTAGATGGGAAGGTTAAGGCTGGGTGTGATGATTGTGTAAAAGA--GTGAAGAACTTCCCTTCATCTTGGGATATGGTATTCTGTGGCTTCATGTATATATAAATGATTGTTCCATAAAACAGAATTACTACTGTGAGGTGGGAGCCACATGTATTAAGGATCTTTTGCAACCTTGTTGCTGACTTGATCCTCATTACAGCTTGAGTGATAACTCCATATGAGATAAGAATTAGTGATAGAGGTACGAAAAGAAATACCACTCCGAAAGCAAAGACAACAATCTCAATTACTTTTGAATAGACACAAGCCATCTTGATCAATGCTGGCATCTCACAGAAAAAATTATCCACTTCCCGGTGCCCACATCTTGGCAACTTCAAAGTCAAGGAGCAAACAATTAAGGCACTGGCAAGACCACTCAACCAGGCAGTG--------------GCAAAGCTGAGGGTGCATT-TTAAGGTGTAGTGAAGAGGTTGACAGACAGCAGCATAACGATCATAGGCCATCACAGCCAACAGAAGACATTCTGTGGCTCCCAAGTCAAGGACAAAAAAGAATTGGAGTACACACCCTCCATAAGTAATAGATTTTTTTGGGCCCCATTGATTTGCCAGCATCTGGGGGATAATGCTAGTTGTATAACAGAGGTCCAAGAAAGACAAATTGGATAAGAAAAAATACATGAAGGTATGGAGCTGGGTGTCTAGATAAGATACAAGAATGATGGTTGTATTTCCTACCAGAGTCACAATATAGATGATGAAGACAACCACTGAGATGATGTGCTCTAATTGGGGTCGATCAGAAAACCCCAGAAGGATGAAATCTGTTCCAGAACTTACACTGCTTGTTTCCATTGTTCCTTAAGAAAAGCTAGCAGGCAATATCATGGTAACCAAAAATAGTGTCAGGTTTAGGTAGAACTGAAAATCTCTGAAGTTTCTCAAGGGTATCCAAAACTCTCTTATTTGCATGCTCTCTCTCATTTGGAACATCTCTTTTAACATTTCCCTATGGCCCAGTGCTCACAACTTGTTCATATTTAATCCAAAATTAATAATATGCTAAATCCAATCAGGCTGAATTGTAAATCATTGAAAAAACTTAAT s canFam2.chr35 29035597 1237 + 29542582 ctttgcataaatgaatCAGTTAATTATCTGTTGATAATTTTTAATATTATTTC------CTAT------CTCTCTTCCATCGAACTCATGACTTTGCTGACCATTCTTCTATATGTAGTATTCTCTTTACTGCACTCTTTACATCTTTGTTTCTTAAAGTGTAGATTAGAGGGTTAAGGGTGGGTGTGATGATAGTGTAAAAGAAAGTAAAGAACTTCCCCTTATCTTGGGATGTGCTACTATGTGGTTTCATGTACATGTAAATGATTGTTCCATAAAACAGAGTTACTACTGTGAGGTGGGAACCACATGTATTGAGGACCTTATGCCACCTTGTTGCTGACTTGATCCTCATGACAGCTTGAGTGATAACTGCATATGAGATGAGAATTAGTGACAGAGGTATTAGAAGTAATATCACTCCAAGAGCATAGACAGTGATCTCCATTACTTTTGAATAGACACAAGCCATCTTGATCAATGCTGGCGTCTCACAGAAAAAATGATCCACCTCTCGGTGTCCACATCTTGGCAACTTCAGAGTCAAGGAGCAGAGAATTAAGGCACTGCCAAGACCACCTAACCAGGCAGTGAGCACCATCTTCTGGCAAAGCTGAGGGTGCATTATTACTGTGTAGTGAAGAGGTTGACAGACAGCAGCATAGCGGTCATAGGCCATCACAGCCAAGAGAAGACATTCTGTGGATCCCAGGTCAAGGGCAACAAAGGATTGAAGCACACACCCTTCATAGGTAATAGACTTTGTTGGACCCCATAGATTTACCAGCATCTGGGGGGCAATGCTTGTTGTATAACAGAGGTCCAGAAAAGACAAATTAGATAAGAAGAAATACATGGGAGTATGGAGCTGGGTGTCTAGGTAAGACACAAGAATGATGGTTGTGTTTCCTACCAGAGTCACAATGTAGAAGATGAAGACAACCCCAGAAATGATGGGTTCTAATTGGGGCCAATCAGAAAACCCCAGGAGGATGAAATCTGTTGTGGAACTTCCATTGTTTGTGTCCATGGCTCCTCAGGAAAGTCTAGGAGACAA-ACCATGGTAATC-AAAATAGCATCAGGCCTAGGTAGAAATAAAAATCTCTGAAATTTGCCATGAGTATCTCAAATTCACTTGTTTGTGTGCTCTGTTCCATTTGG-ACACCTATGTTAACAATTTCCTTGTGTTCAGTGCCCAAAGCCTCTCCCTGATTAATCCTAA------------------CCAGTGTGG-----TTCTAA-------AAAGAACATGGT a score=18293 s hg19.chr6_ssto_hap7 336516 541 + 4928567 TTGCTATGTCATTCATTGTTCTATGTATTTCAATTAAGTAATAAAATCATGAAGTCAATTATGTGATTTTAAGAGAGGCATATGTATTGAGGAGTTGTTCCTCTTTGAAGCTATGACATAAGCATCACTTGATCATGATAAATCCTTGCATTATTGAAGGAGTTAAGCTTGAGGTAAAAAGTTAAATGACATCTTTTTTTGGAATAAACTCCACCATTTGATAGCAGAATCACTTTCAATATTTACTTGCAAATATCTACATTTCAGCCATTATAATTATAATTATCC-TCACCACCAACTTACTCCTCCTCCTTATATTTTTTTTACCCCTCAACATTGCAGGCACTGTTGTTATTCTATCAATTTTGGTGTTCCCTACTACACTG--CCTTTTTTTGTGAGTGTGTTTTTTGTTGCCAGGAAATAATTATCTTTCTTATTAATATTTACTTACATGTATAAAGGCCTATATGTTTTTT-AAACAGCTTTAATGACTAATATTACACCATCTAAACAGCCTTACTGATTTGTTGC--AGTTAAATA s canFam2.chr35 29037031 508 + 29542582 TTACCATCACACCTTTGCTTCTCTGTATTTTGATTAAGTAATAAATCCATGAAGTTAATAATGGGAT---------AGATTTTGT--------GTGGTTTCTTTTTAAAATTACAA-ATCAGCAT-ACTTGGTCATGAC-AATTTTTCCCTTATGAAAGGAG-TAAGTTTGAGGTAGAATGTTAAATGTCCCATTTTCTTGGGATTCGTCCCCTCATTCGGTAGCAGGATCACTTTCCAGATTCACTTCTAAGTGTGTGGATACCAGCCATTGTAA-------TGTCCATCATCACCAA------CCTCCTCCTTATGTTTTCCCTCCTATTCAACATTGCAGACACGTGTGTTCCTGTGTCAATTCTGTTGTTCCCCA-TATACTGAACTTTTTGTGGCTCATGTG-TTTCTGGTGCCAGGAAA-AATTGTCTTTCTTATTAACCTTGGTTTCCATGTACAAATG-CTATGTGTTTCTTGGAATACCTTCTGTGACTGCTATTAAACCATTTAAGAAGCC-TATCGATTTGTTGCAGAGTTAAAAA a score=10673 s hg19.chr6_ssto_hap7 337057 359 + 4928567 TTGAGGTAATTCCAGAACTATTTGGCCACC----ACGTACAACG---ATCTGTGTCCAATCCTACTTACCAGCCATTCAGCAGAATTAGCTGGGC--GCTGGGCAGGTAATTCAAACAAAAAGCAGTTCATTAAATAGCCA--GAGTTGTTTTAATCTATGGAATTTACCAATCCAACATGAGTGGATGTTCTGATTGCTTTGAAATCCTTTAGGTAAAACCATCACCCCATTGGGCTCTAAAAGAATACAGATAC-AGATAAAAATGTCATCAATCTCACCATTTCTGATTATTGTATCATATCACT-AAGTAGACAAAATATTTAATGACTGACTGAGTTAGTTTTTTTTTGTTGTTGTTGTTTGTTTTT s canFam2.chr35 29037730 351 + 29542582 CTGAATGAATTCTAGAAACATTTGGTTACCCTATATATACAGCACACAACTGTGTTAATGCCTACTTACCTGGCATTCAGCAAAAGTAGCTAGGTAGgttgaacaag-aagttgaacaagaagCAGCTCAGTAAAAAGTCAATGAGATGTTTC-CCCTGTGGAATTTACCAATT--ATATGAATCAATCCTCTGCCTGCTTCAGAACTGTATTTGTAAAACC-TCAT----TTAAATTCTGAAAGATTACAGAAAAGAGATTAAGAACACATAAATTTCACTATTTCTGAATAATTGATCATATCATTAAAGTAGGTGGAATGTTTAATGACTGAATTAGTTTATACattt------------tttattttt a score=33593 s hg19.chr6_ssto_hap7 338014 1133 + 4928567 TTAGTTTAAACATTTTTTCTGCTGATAATTTCTGACCACGAAATTCAGACCTACCATACTTTACATTTATAGTGTCCTTGAGGCCATGGAAT-AGAAACCTCATTT---GTTTC--TGGTATATAGTAAAACAAGGGGAAGATAGATCATTTATA-TATGTCATTGTTATAAGTGTTTCAGTTAGAACAGAATAATGTTATAATCATAAAGAAGGAAATGTTATCA-----AGTAGTATGAGATAGAGGTGTAGTTTTTCACAGCACAAAAATGGAAATCTAATTAATAAGTGTCCAGTTTTTTTATTTTTCGCAATAGGTTGTCAACTAAGGAATG-atagtgcttcattgcacagattctgaactcaaagtccctggcatcaaattccagcttcaccacttggaagc--tgtatccttgggcaattatttaacttgtttgtgtaggaggttctttatacatgaagaaaatataataaaatttccttcctcaaagggatgttgtgagggttaatatttataaaagcacttggaactgagcttggttcatctttaattctaaaaatgataacctatATTCACCTGTC--ATTGTTATTCTGTCTACCCCTTAGTCCATTAATTTTTCACACTAGTGATTTTACCGCAATGACCTAGAACTAAACTGGAATGTTT--TTTAAAAAATTTGTGTAACTTT---AAAATTTAGAAACATTTTTATATACACAAAAATATGCAGAATCACAATATGCACATTGAACTGAAAAGCTTCAGGAGCAGGAGATGAC------TTGAGGTCTCCAAATGCTTTGATTAAAAAATTCACTCAAATTCTTTTGAC----TGCTGTTGGGTTTGTGTTGGGAATTAAAAGGTCAT-gaatttcaaagtggaaaaaaacctcagaagtcatgaatctagccttctgctctgcataggagatccttcaacagaatcgctacacagctgctactggcataacttcagtgacagggaagtcaattacacttgaagcagcctctctcctttagtcaatgctgcttatattgaactcaaagatgattccttg----cccagccctggctgattttctttattctgaaaataacacagagtaagtcAATTTAACATGGCCTCATAAAAACCCCAGTATTATTATATGA s canFam2.chr35 29038081 1100 + 29542582 ttagtttaaaaatgttttatgaatataa--tatGACCATGAAATTCTGACCTAGGGTGCTTTATATTCATAGCGTGTTTGGGACCAAGGGATAAAAAACCATAATTGCAGTTTCAATGAAATATGGTA-----------------GTTACCTACAGTATATCATTGCTATTAGCAGGTTAGTTAGAACATGAAAATCTTATAATCAT---GAAGGAACTGTTATTACCATTATTATTATGAGATTTGGATATAGTTTTCCTCATTAC-AATATGGAGATTTAATTTAGTAATG--CGAATTTTTTAT-----GTGGTAGGAGGTTGGCTAAGTTGGgcatagtgcttaagagcaaagactctaaacccagag--cttggtgtcaaatcccagcttcattactgggaggtagcgtgtccctgggcagttatgtaacctctttgtgcaccagattctctgtgtgttcagtgatgataataa------tttcctgaaagggaggtggtgagggttagtatttgtgaaagcactaggaattgtgcttcgttcatatttaattctcaaAATTA-AAATTGTATTCATCTATCTACACATTATTCTTTTCACTCCTTACTGTTTTCATTATTCATACT-TTGATTTTACCATGATGGTCTAGAACTAAACTGGGATAGTTAACATCTCATGTTTGCATAACTTTTCAAAAGCACAGACAC----TCATGTACACAAAAGTGCCCATAAGCATGATGTACCTACTGAACTGATAAAC-CCAGAGGTAGGAGAGGATAGAGGACTTAGTTCCCAACATGCCTTGATTACAAAATGCACTTGGGGTTCTTTGACCATGTAAGTTTGGGAGAGTGTTTGGAATTAAAAGGCCATAGGATTTAAGAGTTGAAATAGA-CTCAGAAACCATG-ATCCATCCTTCTGCTCCTGA-AGGAGGT-CTTCCACAGAATGTTCACACAGTTCCTGTTCTCAGAGCGTTA-------------TGGCTGTCCTTTGATCTGTGCCTCATCCCTA-------Ctctttatgttgagctcagagatgcctctctaacatccaggcactggtt-cttttcctttttctggaaataacatggaataagtcaattcAACATGGTTTCATTAAAAGAACAGTTTTTTTTTTTAA a score=13014 s hg19.chr6_ssto_hap7 339153 445 + 4928567 CATGGATACAacaaataaaaagtaaagcttggtgagtttcagtgtatattcttgtaactatcacctaaatcaataaataaaacattgatgattaccctaggagcttttctttgtgccttttaccaatgataactcttccctatcccctgaagtatccactatgctgctatttatagtaatcccctctttgcatgttagtaggttaattacccaaatgtgcacctctagacaatattgtatagtttggcttACTAAAAATTTTTTATATACCTTTTAACTctcttttaatattagaaactgttaccaaatatatgcttagatttctcttcccagacaaagcaca-----ttgttagctgttcctaccactacatgctcttttattaccatgctttttcttgttgctctcc-ctggacacaccatgatttgtcaagtgctgcaaattagtgag s canFam2.chr35 29039368 389 + 29542582 CATAGATATAGAA---AAAAGTAAAAGCTTAATGAGTTAAGGTGAATATTCTT-------------------------------------------------GCTTCTTTTTGTGCC-TTGACCAATCATTACCCCTCGTT----CCCAATGGATCCACTATATTAGTGTTTATAGTAATCACCTCCTTGTATTTTAATACCTTGATAATGAAAATATGCATCTGTAGATAATATTGTTTAGTCTAACTCATTAAAAATTGTGTACATGTCTTTTGAGT-TCCCTTAATATTAGAACCTATTATCAAATGCACTCTTCGGTTTATGTTTCCAGACTACCTGTATATGGTTATCAGCTATTGCTAACTGTGTATA---TTTAATTACCATGC-TTTTCTGGTTGCTATCCATTGCACTCACCATGGTTTATTGAATGTCTTGGATTAGTGAG a score=8644 s hg19.chr6_ssto_hap7 339905 238 + 4928567 TTTAAAAGTGAATGTGTTATTTGAAATGAGACTTACAACACTCCAGCTGAAGAAATAGATGGCAAAAAAGAGGCATGCTACATTTTAATCGAAACTCAGTTTTTCATTTTTCATAGTATGGACTTCAGAGCCCAATAATCGCGCATAACTTAACATTTTGCTTTCTCCAGTGAAATCTGAGACAAATGAACCAAACATATTTCAACATAATTT-----------ATGATATTGAGAGAAAATTAGAAGC s canFam2.chr35 29039757 219 + 29542582 TTGAGAAGTGAATACATTACTTCAGGTGTGCTTT---------------------------GTAAAAAAGAGGCATGTGATGTTTTCACTGAAA---AGGTTTTCATTTTTCACGGTATGGACTTCAGTTTCTAATAGCTTAGCTCAATTTTACATTTGACTTTGTTTAGTGAAATGTAAGACAAATGAAGCAAACATACTTATATATAATTTCAACGTACATAATGATGTGGAGACAAAATTAGAAAC a score=21490 s hg19.chr6_ssto_hap7 340711 605 + 4928567 AAGATTAGAATATATTTTCAT----GAAGGAAGAATTCAGAGCTGTCATGTTCTCATGTAGTCCAAACATACCCATGTTCCCATTATGACGTTTCTTCATTTAATTAATAAATTAGAAAAAAATTCTTGTTGGATGAGTTACTAATGCCCTGAAGAATTGGATTAACCAC----TGGTCATACTGACACTACAGTGCCATTCACACTTAAATGCAACAGCTGAAATAAGATTTAATAGAAGTCTCTATTTAATGTGGATATTGGAAGTAAACTAAATGTGGGACTGGTGAAAA---TCCTTAATTAGGTTTGGTTAAATATATTTTCGGTTGGCTATTTGATGTCTTTTTAATGTATACTCTTGTTATTCATATTTACAGCTAGATTTTTGCCTAATTAAACAAGGAGAACACTGTGTTGGTCAATGTATATTCCAAGAATCATTAACATGTAGCAGGGAAGTATTTATTTACAGCTCTAAAGGCTACCTATGTTGATATGGTTTAGACCTTGAGGACTGATGCCCCACAGAGGTGATTAAGTAAAGCTATGACTGTGGTCAGAGGCATATCCAAATAATAATTTCATGAAAAGTTCTCTTAACACATTAGGTTTC s canFam2.chr35 29039976 584 + 29542582 AAAACTAGAACATATTTACCTTTCGGAAGGAAGAATTCACAGCTATCTTGT-CTTTTGTAATTTAAAGGTACCTATATTCCCATTCTGATGAGCCTTCACTTCACAGGTAATC---AGAAGGATTCTGGTTTGGCAAGTTACTAAGTCCATGGAATACTG-ATTAGCCACAACTTTGTTGTACAAACACCATGATTATATTTGCATCGAAATGCAAAAGCTGACCTAAGATTCAGT-GAAGTTTCTATTTAATGTGGATGGAGGAGAGAAACTTGATGTGCAACTGGTAGAAAAGTTGATGGATTTGGCTTG-TTAAATGTATTTTTGTTGGGATATTTGTAGTCTTTTCA-TGTGGACTTTTGTTAGACACATTTGTGGGTGGTTCTTTACCCAATTAAACCAGGAATGCCCTCTGTTGCTCTATGTGTGCTCCAA---------------------AAAGTGTTTA-TTAGGACTCCAAAGGCTA-GTATGTTAACAGGGTGTAGACCATGGGGACTGGTGCTCCACAGAGATGATTAA-CAGGTCTTAGACTGAGGTCAGAGGCTTATCTAAACAACTATTTTAGAAAGATTTCCCTTCAGACATTGGATTTT a score=8777 s hg19.chr6_ssto_hap7 341633 420 + 4928567 TTTCATCTTTTCTTTTTCtttttaagtttttaaatttaaaaat---ttggagattaa-ttatatattatattaaatttaC-ATTGAAAAATGAATATATGATGTAAACTA----TATAAAAATGAACACATTTACTTGAAATTTGGTTTATTCAATTGGTAAGAT-----CAAAATTGGATAAATTAAG----TTATGTAGGTGTTGTGTCTATAGGA--------------CAAAATATTTAGTTTTAAAAAATTTATGGGATAATCATAATTCTA-GGTTTATGAA--TTATTATCATCGTT-CTATTTTCAGCAAATTAAAAATAGT---ATGAACACTCTGGAGCTTATCCCTCAATTTATGGTCTGGAAActtaccaccatccccagcttctggtaattaccattccactctctgcttctatgagtttaagtttttcagatcctcatttaaatg s canFam2.chr35 29040560 423 + 29542582 TCTTGCCTTTTCCCCCTTTTTT---GTTATTCTCCATGAAAATTAATCTGAGGTGAATTTATGTA-TGTATGAAATTTACTGTTGAAGATTGAAAAT---CTGTAAACCATGTCTATAAAAATGAACACATTTAATTGAACTTTGTTTTCTTT-TTGGGTAAGATATCAATCAAGTTGGAGAAATATAGGCAATTGTCTA-GTGTTGTGTCTGCAGGAAAGAAAATACTTGCTAAAAGGTTTTTTTTTAAAA---TTATGGAATAATCATAATTCTGTGGTTTGTGAGCCTTATCATAGTTGTTCCTATTTTCAATGAAGTAAATACAGTATCATGAACATATTTTCGCCTACCATTCAATCCAAGTACTGGGATCTCTCTA------ACAGCTTATTGT------------------TACCTCTATGCTTttacatcttccttgttcttacctgactg a score=18377 s hg19.chr6_ssto_hap7 344348 542 + 4928567 GGAATTTAAAAAATTCCATGTGTGATTTTCTAACTCTA-----TCATAGGTCGGTAACCTCTATACATCTGGAAAGGCTAGATGTGGCAAATGTTTCCTTGTAAAAGTTTTGGGGG--AAGCTGAGAGCAGCTTTCTCACATTATACACGCAGGTCTCCTATAAAC-GCCGGTACATCCTCCCAAAGCGTGATGGGAATCTCCAAATCGCTAAATGTGTCCTGTTACT---CCGTTTCTCTTTTCCCACATCAACGTCTGGTAGAAGGAAGGCCAACTGCCCCATGGTCGCT-ACCATTCCACCCGTCCTCATCCGGG-----------------ACTTCGCTGACCTTCCGGCCGTTAAGGCTGTTGTCTGTTGTCATCAGGACCAGGT-AGGTCTCACCCAATTGGGACAGAGAGGTC-CCCCGAGGACAGCATCTGCGCGGCGCCGTGGCCTAAAGAGGAGGCCAGGCC----TCTCCCTAACTCCGCCTTCGCGGGCCCT---GCACCCCAGCAGCC---TCTGCGTGT------------TTCTTCCCG-CCCGGCACACCCGCGGCCATCCAAAGGTGCTGTGTGCCGGC s canFam2.chr24 27866926 577 + 50763139 GGCATTTACAAGAC-----GTATGATTTTCTAACTCTACTTTATCATATGTCGGCAACCTCTTTACATCTAGAAGGCCTAGATGTGGCAAAAGTTTTCTTTTGAAAAGGTTGGGGGGTAAGTTGAGAGCAGCTTTTTCATATTATATACACAGGCCTTCTATAAACGGCCAGTAAATCTTCCCAAAGGGTGGT-----CTTCCTATTGGCCAAACGCGGTTCGTAATTCTCCCATTTCGATCTTCCGACAGCAATGTCT-GTAGAACGAAGACCAACCGCCTTTGGCCCATTAACTGTTCCACCCGTCGCCGAccggggcggggggcgggggggAGCTTCGCTCACCTTCCGGCCGTTAGGGCCTCTGTCCACTGTTCGCCG---TAGGTGAGGTTTCGTCCACCTGGGGCGGAGTGGTCATCCCGGGGCCCGGGTCTGTGGGGCGCCAAAGCCCGA--GGGCGGCCGAGCTTACGTCCGCGGAGACCCGCCTTCTCAGGCCCTCGGAGGCCCCAAGGGCCGGGCCGGCGTTTGAGCGGCCGCCATTCTTCTCACCCCGCCACACCC---GACGTCCAAAGGCTCCGCGGCCCGGC a score=9367 s hg19.chr6_ssto_hap7 351772 305 + 4928567 TCATTAAAGATGACATGATGGAAGAGAAAATATATATTTTTAGATTCTAGCAGTGTGTCTTTCTAGATCTATCTAGATTGGCTACTATTATTAAATAATGGGCACTTTT---AGAGAAAGGTATCAGATCATGGCAAAAATAAAAGTTTAATTAAAAAGTAATCACATTGTCCCATAAAAGC-TAAATATTATATTATGATAAATAGAAATAAAAAGATTTATTC-TGTTATGCAATTCCACTACATATAAACATTA---CCACATTTCTAAAAATTCACGTAAATCCGCCAGTTCCACAGATGTAT----GTCAAA s canFam2.chr35 29134580 275 + 29542582 TCATGAATTATGAAGTGACACAGGAGACAATATATATCT------------------------------------GATTGGTTAGAATTATTAAAT------TACTTTTTAAAGAGAGAGGTATTCCATCACAGAAAATATCAAAAGTTATTTCAAAAGTCATCACATTTTCCCATAAAAAAACTGATACTGTGGCATGATAAATGGAAATGAAAAGATTTATTCATTTTATGAAATTCCACTACATAAAAAGTATAAATCTACATTTCTCAAAATTTACATAAATTCTATGATTCTATAGGTAGATCAAAGCCAAA a score=23963 s hg19.chr6_ssto_hap7 352077 748 + 4928567 AGCCTAACTGGTTTCAAACTAGTCATATTATCTTTCCATTAAGTTGA-GACAATCATGGAATAAACATTTAACGAATGAAAGAGAAATTGATAAGACTGTGTCATTACCTTTAAAACCCTTTAATTTGTGGCTT----------TATATTACGATAGAGTAGTAATAGACTTAAATAGCAGAGACCCTTTACTCAAGATATCGATTTGAAATTTCATTGAAAAAAGAGTGAATTGTTTTAAATGGGGCTTATGACAATTACTGTCTTATAAACTGCACTGTTTGCATCAAACACAAATAAATATTTGGGTGGCATTACAAAAGATTGGGTGTACAAAATCATTATTGTGTATATGTATATTTTTTCTCAAGCTCCAATAGAATGAACATTATGGGTATATTATTTAATATACACACCATAATGTATATGAAACCATTTGCTCAGGTCTATACTTTGGAAGAGGCAAGGATTAACATTGAAAATACAAAACTAGATAACCAAAACAGTTTCTATGTGGTTTTAGAATAAATTAAATGCATTCAAATTTAT--------GTTTACATCCCATTTGTGTTTTATTTCAAGCAAAAATAAAATTTCTAATGA-TCTGTTTTCTCTGATGATATACCAATGATCAGGGACATAAAGGAGCTAAGTAGAATGGTTGTAATTTTGTTTGCATCTACAAAATGTTTGTATATAATAATTATATTTATGGATC---TCCATGACCTAGGAATTACTTGCATTTGTAAAAATTAAAGAAAA s canFam2.chr35 29134990 643 + 29542582 ATCCTAACTAATGTCAAGCTAGTCATTTTAT--TTCCATTGAGGTGAAGACAATCATGGAAAAAATGTTTCATGAATGAATAAGTGATGAATAAGACTATCTTATCATGTTTTAAACCCTTTAATTTGTGTCTTCTCACTTCCTTGTATCATGATAAAGAAGAAATA-ATTTGAATAAGAAAGACTCT--ACTCAAAATATCAAT----------------------------------AAATAG--------------------TTATATA--------------------ACAAAAAAATAGTTATATAACATCACAAGAGATTTAATGTACAAGGTCATGATT-------TGTATATT-------------------------------------ATTATTTAGTATACAAACCATACTGTATATGAATCCAGTTATCCAAGTCTATATTTCTGAAGATCCAAGAATTTGCATATAAAATAGAAAACTAGATCATCAAAA--GTTTTTGTGGGCCTTTAGGGTGAATTAAATGCATTCAAGTTTATATCCTCTTGTTTACATCC--TCTGTATTATATTACAAACAAAAATAAAAATTCTTAGGAAGTTATTTTCTCTGAAGGTATGCCAATTATTAGAGTCATAATAGAGCTAAATAGGATGGTTGTAGTATTCTTTGCATACATAGAATGTTTATATACAGAAACTAT-TCTATTAATTGTGTCTATGGTCCAGGGATTAGTTGCTTCAGCAGAAATAAACACAGa a score=93051 s hg19.chr6_ssto_hap7 352833 1539 + 4928567 CATATTTAATTGCCTTATTCACTCTAGTCTTTATCTATGACTTGCAATTCCTCTTTATTTTTGTAGATTTGTGGTGAAATCTCATCAGTTTCTTCAGGGCATCCTTCATGTCCTTATTTCTTAAGGTGTAAATGAGCGGGTTGAGACTTGGAGTGATGACGGTGTAAAAGAGGGTGAGGAACTTGCCCTGGTCTTTGGAAGCCCTGTTACCTGGTTGCAGGTACATGTAGATAATAGTTCCATAGAACATAGACACTACAGTAAGATGAGATCCACAGGTATTCATTGCTTTTCGCTGGCTTGCTTTTGACTTCGTTCTCAGCACAGCTTTGGCAATGTAGCCATAGGATATAAGAATAAGGATGAGAGGTGTGAGGACAATTATAATGCCTAAAGCGAAAACAGACATTTCAACTGTTGTGGTGTCTACACAAGCTATCTTGACCAGAGCTGGCAACTCACACAAGAAATGATCCAGAATGTTGTTTCCACATGTGGGCAAATTCAGAGTGAGTGTACATAATACTACAGAATTGGCCAAACTAATACTCCAGATCATGATAATCATCTTTAGACATAGATGTGGGTTCATGACTACAAAATAATGCAAGGGCTTACATATAGCTGTAAAACGATCATAGGACATAACAGCCAGGAGAAGGCACTCAACTGAGCCCAACCACATGTAAACATAGAGTTGGATGATACAACCCACATAGCTGATGGTCTTATCAGGTCCCCACAAGTTGACCAGCATCTGAGGGATGATGCTGGTTGTGAAACATAGATCTAGGAAAGATAAATTTCTGAGGAAAAAGTACATTGGTGTATGAAGCTGGGAATCCAGGAGAGATGCAAGAATGATGGCTGTGTTACCCACCAATGTAATTAAGTAGAAGATGGCGACAACTCCTGACAGGATCATCTCCATTTTTGGATGGTTAGAGAAGCCAAGCAGAATAAAACCATGTAAAGAACTATAATTGCTTTGGTCCATAGTCCTTCAATGTCTAAATCCTAGAGTGAGAAAaggaggaggaggaggtagatgatgatacaaggataaggagaaggaagaagaaggaagaagaggtagaggaggagaaggaggagggagaggaagaagaaaaggaAAAGAGGAAGAAACAATTTGTCAACATGAACTATCTAAATAATTTG---ATAAAATTAGAACTAAACAAAGAGAGATAATTTATGTTACTAATTGAAAAAATTTAATGGATAAAAGTAAAAATTACAGCCAAGAAATCTGCTATTTGTCATAGATTCTTTTATGGCAATGAGTTTAATATTAGATTTTTTAAAAAAAATCCAGgtgaccttggggagttcacttttaaacttgaggtctgaattatctaacgtgtagatttgaaagtttgaaatagatgctggttctaaaat-----gaccctATGATTCTTTATAAG-CTAGTTAGCTTGATAAAATGAACATATTCTTTTATTTGATCAGTAAATTCACCTATAAAATTTAAGTACTGGGCTAATGGTAGGATGAGGAAAAGA s canFam2.chr35 29137025 1489 + 29542582 CATATTTCATTGACTTATCCAGGGTAATATTTTTCTGTGATATCTGGTTCCTCTTCAATTTTGTAGATTCATG-TCAACTCTCACCAGCTTCCTCAATGCATTCTTCATGTCCTTATTCCGTAGGGTATAAATGAGAGGATTCAGACTTGGAGTGATGATCGTGTAAAAGAGGGTGAGGAACTTGCCCTGGTCTAAGGAGGCACTGTTACCTGGTTGTAGGTACATGTAGATTATAGTTCCATAGAAGATGGACACAACAGTGAGATGAGATCCACAAGTATTCATTGATTTTTTTCGGCCTGCTTTTGACTTTATTCTCAGCACAGCTTTGGCAATGTAGCCATAGGATAGAAGAATAAGGCTGAGGGGTGTAAGGACAAAGACAATGCCTAAAGCAAAAACAGACATTTCAACTGTTGTAGTGTCTATACAAGCTATTTTGACTATAGCTGGCAACTCACACAGGAAATGGTCCAGAAGGTTGTTTCCACATCGAGGCAAATTCAGGGTGAGTGTACACAATGCTACCGAATTGGCCAAACTAATGCTCCAGACTGTGATTATTATCTTGAGACAGAAATGTGGGTTCATGATTATCAAATAATGCAAAGGCTTACAGATAGCTGTGAAGCGATCATAGGACATAACAGCTAGGAGGAGGCATTCGGTGGAACCCAACCACATATAAATATAGAGTTGAATGACACAGCCTATATAGCTAATGGTCTTGTCAGGTCCCCACAAGTTAACCAGCATCTGAGGGATGATGCTGGTTGTGAAGCATAGATCCAGGAAAGATAAATTCCTGAGGAAAAAATACATTGGTGTATGGAGACAGGAATCCAGGAGAGATGCAATGATGATGGCTGTGTTACCCACCCATGTAATGAAGTAAAAGACAGTGACAACTCCTGATAGCACCATCTCCAGTTTGGGATAGTCAGAGAAACCAAGTAAAACAAAACCGTGTAGAGAAGTATAATTGTTTTGGTCCATAGTCCACTAATGCTCAAATCCTAGAATGAGAAGAGCAGGAGGTGAAGG--------AATACGGGGATGAAGACAATgagga----------------agaggagcagaaggagcaagaagaagagaaggagaaagaagaggaga------aATCTGTCAATACAGACtat----ataatttaaatacaaaatttta-------aaaaggatataatttatgttaataatttaaaaa---taatGGGCAAAAG----AATTACAGCCAAGTAATTTGGTATTTGTTGTAGA-TCTTTTATAGTGATGAGTTTCATAATATATTTTT--------ATCTAAGTGAGTTTGGTGAGTTTACTCTTAAACTCAAGGTCTGAAATTTCTCACATATAAGTTTGGAAGTTTGGAATAGAC-CTGGTTCTAAAATGACGCGACCCTTTGATTCTCTACAAATCTTCCAGGCTTGATATAGTGAAAAGACTCTTTTACTTGGTCATTAAATTCACCTAAAGAATGTAATTATTTTGCTAATGTCAGAATGAGTAAAAGA a score=10555 s hg19.chr6_ssto_hap7 354375 388 + 4928567 gataacctggaggatgaacctggggacatcatgctaactgaagtaagctg---aaagacaaatattgcatgatttcatttatatatggaatccaaaaaagttgaactcatagaggtagagagtgg---------gggcaggagatgga---tgggaaaaggggaga-tgttgatcaagggtactaagtttcagttagaaaaaaggaaccagttttagtgatct---cacagaatggtgactacaataaacaataatgcattgtttatttcaaaattactaagagtagattttaagtgttttcac---------------cacaaaaaataagtatgttaggtgatgggtttgttaattagcctgatt----taatcattacacattataaacatatattaaaacattatattgcaccccataaaca s canFam2.chr21 20524373 414 - 54024781 aacaacatggata--gatcttgaaggcattatgctaagtaaaataagtgagacaaagaaagatactatatgatctca-ctatatgtagagtct--aagagccaaactaatggaaacagagaatggattcatggtggtcaggggctaggagttgggggaaatggtgattattattaaaaggcacaaatttccagttataaaa-------caaataaggggatatatgtacaccatggtgacagtagttagcaatattgcagtaaatacttgaaagttgccaagagtagattttaaatgtctttacacacacacatacgcactcagaaggtaattatgtgaagcgaaggatatgtgaattaatcttaatgtggtaatcatttcacaatacgttcatatatcaaatcatcacattgtataccttacaca a score=1893 s hg19.chr6_ssto_hap7 355414 39 + 4928567 aaaaaGCTAATATAAAACATTTGGTTAAAAAATAACAGC s canFam2.chr35 29141421 39 + 29542582 AAATAACTAAGAGAAAATACATGATTGAAAAATGACAGT a score=28258 s hg19.chr6_ssto_hap7 355624 653 + 4928567 TAAATATCAAACTGGTGCTTCT-----------TCTCTCTCTTTATATAGATGTAGTACAAAAAGTTGTGCTTTTTTTGTTTGTTATGCCATTTCAAATATGTTTTTTTGAATGTTATTAAGAAATTACTTCCAACTGTGGCCATGATTCAAAAGTGGATACATTTGTGAGACTAACCGGAGATGGTGGTTGAAATAGCCGTTTTGAGAAAATCATTTTGTGATTTCTTTAGCATTAGCTTTTCAAAAATTATGATTTGATTCTGAGTTTTGCCATTAATCAAATTGGATAGAAAGAAAAATAATTCTCTGA--AAGATATTTCAAGCTGTCACACCCCATTAAAGTTCCATAATGTCTGAGCAGGGG-----CATCAATAATTAATGCTTATTTATTTTAACAGACTCGTTGATGTGTATAATTGTGCCTAACTTCTGAATAAAATAGGGCTTCAGTTAAAATTATATAAAAACC----TGAAAATTCTTTTAAAATTAAAATCAATATTATGCTGTTAATTTCTTAACTATTTCATTATTACTACAGTCCATAAAGATTAACTCAGGAAAGAATAAAAATCCTCCTTCTGCCTATTAAAAAG-TGACATAGAAAAATCTTCAAATAAATTTTCATGCACAGTATGAGATTTAGAAATGGATACATAAAATCTGA s canFam2.chr35 29141460 657 + 29542582 TAAATATCGAACTGGTGAATCTCTCTCTAGTTCTCTCTTTCTCTGTGTAGATATAGTACAAAATGTTATGCTTTTTGA---TGTTATGCCATTTCAATTATGTTTCTT-GGACATTAT-GAGAAATTACTTCAAACTG--GCTGTGATTCAAAAGTAGAC-TGTGTAGAAGACCAACTACATATACTGGTTAAAATAGTTGTTTTGAGAGAGTCATTTGTTGATTTCCTCAGAGCTAGCTTTTAAAGATTTACAATTTGAGCCTAGATTCTGCCATTGACCAATATGCATA-AAAGAAAAGTAAACACTCGACTATCGAATTACACACTGTCACACACCAGTAGAGGTATGTAATATTTGGGCAGGGGGGCTGAATACATACTTAATATTTATTTATT--GACAGACAAATTGATGTGTATAATAGTACCTTCTCATTAAGTCAAAT-----TTCAGTTAAAATTATATGAAAACAAAAATGAAAATTCCTTTAAAATTAG--TCAGTGTCATGTTGTTAATTACTTAACTATTCCATCATCATTACAGCCTTCAAAGATTAATTCAGGAAGGAAAAATAATCCTTCTTATGGCTATTAAAAGCCTGACATGGGAAG-TCTACAAATAATTTTTCATGCACATTATGAGATTTAGAGACAGACCAAAAATATCTGA a score=13265 s hg19.chr6_ssto_hap7 356459 365 + 4928567 AAAACCAGCCCATACAGATCTAAG-TTCTTTTTCTTCTACTTTCTACAAATTGTTTTACCAATCCAGGCATACTGTTTCTCCAAGAG--ATTAAGGATGAACATTACTGTGATCCAGAGGGAGTTCCTTTGCCATTCTACTTCTCGACTTTTGTAGAATCCACAC--TATGGAAAATAGATCCCGGTTAAGCATTTTTTTCTCCAGGGCTGTAA--ATTTCTCATGATTTCCCTGCAGTGCCACGGAGAATTCTGCTTTTCCCAAAGTGTGTTAGGGTAGAGATTCTCAACAGGACTCCTCCTTCTCGAATATATGACTTCAAGTAAGAGGATGAAACCTGTCACAAATTCTTACTTCTTGTTCTGAGTTTA s canFam2.chr35 29142344 355 + 29542582 AGAATCAGTCGGGGAAG-TCTAAGTTTTTTTTTCTTTTGCTTCCTACAAGAATTTTCACCAACCCAGGCACACT-TTTTTCCAAGAGATATTAAAGATTAACATTACTGTAATCCAGAGAGATTTCCTCTGATATACTGCTTCTTGAGTAGTGAGGAGCCCACAACGTGTGGAAAA---------GTCAAGTA--TTTGCATTCAGAAATGTAGCTACTTTTCAT--CTTCCCAGCAATGCACCAGAGACTTTT-CTGTTCCCAAGGAGC-TCAAGGAACTGATTCTGGACAGGAATCCTCATTCGTGACCGTTTGACTTCACATAAGTGGATGGAACCTGTCACAGATTCTTACTAGGTGTTCTGACTTTA a score=7129 s hg19.chr6_ssto_hap7 372311 1209 + 4928567 AAGGCAACATTGAGTATTGATGATGGTATGTAAGTTCTTAGCTGTCAAGCCTCTTAAACAGTGTTCTCTGAATTTTACATATGTGAAAAGACATTAATCCTCTTAGACTTTGGGGTTGTTGTGTGAGGCCTAGGAGGAGCACACTAGCAGTGGCCAGTCTTCTT------TAATCAAGAACA----GCCTTATACATTCCATGTTATGTGTGCTATGATGTGAAAATATTTGGAAAACTCTCTCTT-------CCCCCATTGCTGCCAGACTTATGGTCTTTCTTTGTTCCCAG----GTGGCTGATTTAGGTTCCAGGCAGAATGGA----ATTGGGT--------------------------GCCCTGGAAGCCTGAG----------GTAGATTT-GGTACTATGGAGGGTGCACTTGCTGATATGAAGTTTTATTTTATACAAATCCTGGAGAAGCTAAGTGAGGCCATGTCAGTGTTGCCAGAAGACATGAGAATCATGCCAGATCTCTGTGGCTTAACATTGG------------AACATAGTGGTAAGTG-----------CAGCTATATTTGTGTTTCTTAATAGTTGAAA--GCCAGGTTTATATAAATAGGAAGAAAGAGTTTGCCATAGAATTTATGCTTTAGTTGGAGAAA-AATGTAAAGTTGTTGATAAATTAGGCTG-ATTAAAAAATAATGTGAACACTTAAATTACCTTTAATGGAGTGCAGCCTTGAGAAGAAGATACCACGTGGTCCAAGTCTA--------------------------TATCAA------ATTTGAGTTTAAAATAGATACTTTCAGAAAAGAATCAAAAGGAAGAAAGTCTTAATGTTCACATTGAGTTAAGGTGATGGCTAGCTTTGGAACTGGAGTTCAGCCAGTAGAAGATGTGTTCAGGTCCTTTTAATCCCAAAAAGTGGATGCGAAATAACCATAAATATATGTCAGAAGAGTAAAAAAAGCCAGCAAGTTAAGATAGCAACAAAATATGGCTAAAATGAGCATTGCAATGTCCAGGAAAGCAT-AAACTACACGCA-AAAAAGCTCAAGAATGGGATGACCAACTGAGCAAAC--AGTGAACTGAAAAGATAT----GTAAATTAT----------TGTAACAAGTGCTAAATTATAAGTAAGGTCAGAGCAAA----TATTGAAACACTTGATGAATATTTTCTACTG---CACTTGGAGAAGTTAAATTGATGTCAGGGA-CTCAGGGACTTAGAATTGGGGAGAATGAAGCAA--TCAGAAAGTAAGTACCAGTCAATCATCAGTCAAAAGGGGCTTTGAGGAAATTGATTTATG s canFam2.chr17 52467948 1283 - 67347617 AAAGGAAGAGTGATCAGTATTAGAAGTCTATAAGTCATCCAGCTTGGAACCTCCCAATTAGTAATCCAGGAGGGTTACAGATTTGGAAACATACTGATACCCTTAGTTTTGGGGGC-----------ACCCAGGAAGG----ACCTGAAGTGGCCAGAGCCCTTGGCCATTCCCCAAGGTCATGCGATCTGATCATTTTCCTG----ATGGGCCAAGATGTGGGA-CAGTTGGAAGACATTGTTTTTCATGTCCCCTCCCCTCGTCCA---CTGGGATCAGCCTTGGTTGCCAGCATGGAGGGGGATCTGGG------GAAGAATGCTCACTACTGGGCTCTGATATCTGCTGCTGTCCAGCAGGGTCCTGGCAACCTAGGCAATACAGCCGTGGCCTCAGGAATCACAGAGGGTCTTCTGATGGCCTTGATTCTGTGTGTGATACTGATGCTGGAGACCCTCTGCCAAGTGGTGGTAGCACTGCCAGG--------------------------GTTGCTTAGCCCAGGCCCATCCCCACAAGGATTGTGGGAAGAGGCCCGTTTCCACAGTCCTAGTGGGAGCTTTTCATGGTTAAAACTTCCACTGCTATGTGAG-GGAGACAAAGAATTGGCCACTGGAGTTTCTCTTT--CTGGAGGAATAGCATCAAATTTTTGAAAGCTTTAGCCACATTGAGAGTTTA---GAGTTCTTAAATCAGCTATTCTAGAAGTCAGACTCAAGAACAAGCTCTCAGAAAGAGCAAATGTGAAAACCACAAACAATGAGCTGGAAAGTGACAATCCTCTATTTGGTCTTAAAATAGATTCTTACAGAAAAGCATGAAGAGAAGAGAAATCCAAATGTTTACAGCCACTTAGGCTGATAGCTGACATTACAGGTGAGTCTCAGTC--CAGAAGACTCAACTAAGCAAATCTAACCGCCAGTGCTGCAACCAAAATGTCCTTTTAAACCCATCTGAAGTATGTGGCATAGTGTCAGG-------AGCACCAATACAGGGTTTGGAGGGAAACTCCACTCTTCATAGAAGCATAAAACTTCATTCATGAGAATCTCAAAAATGGAAAAGGAGAACAGGTGAACTTATTAAAGGGAAACAAGATCTCAGAAAATCCTAAGGAGCCCATGGAGCAAGTTCTGAACCATGAGGAGGATCAGGTCAAGAGTCTACATGGACACCTGCTCAAGATGAGCCACTGGCCTGCTGGCAGGAGTGA----GTCAACAGGAAGCACAAGAACATGGAATTGAGTGTAGGGAAGACACCTCATGGAGGGAGAGCC-TTTACCAAATGATCCAGAGGAGTTGTGAAGAAACTGATTTATG a score=2477 s hg19.chr6_ssto_hap7 373996 147 + 4928567 GAGGTTCAAAACCTTCCTCAGAAAGTTAAAGTTCT---AAATTGTATTGAGAAAATACAATAAAGATTCACAGAATATTTATATTAGAATGAATTAAT------TAAATACAGAACA---TTTTAAAGGCAACTAAAAAGATCAGCCATGCTCATTAAG s canFam2.chr17 52469399 155 - 67347617 GAGGTGCCAAAACTCCAGCAGAAACATCGAATCCTCCTAGACTGCATCAACAAAA----AGAAATGTTTACCCCATAACTAATTTACAGAGAATTTACCCCATATATATACAGGAGACTCTTTCTAATGCAGATGAGGACATTAGCAATGCACATGAAG a score=17239 s hg19.chr6_ssto_hap7 380520 580 + 4928567 AGAAGCCTCCTCATTGCCCCTTTTATGTCCCTGTTGCTCAAAGTGTAGATAAAAGGGTTAAGCATAGGAGTCACCAAACTGTAGAACAGGGACATGAATTTGTTTTTGTCCTGGGAGT---TGGCAGAGGGCTGTACATACATGCTAATTACAGGCCCATAGAGGAGAGATACAAT------ATGAGAACCACATGTGTTGAAGACCTCCTTCTTTCCCCCTGAGGACTGAATCCTCAGCACAGTAGCTACAATGAATCCACAGTAAGCAAAGATAATTGATTAGAGAACGAGGGACTAAAATATCCTCACAATGGAGAGCATAGATACA---------------TTGAATGTGGTGTCAAAACGTGATATCTTGATCATCGCTGAGACCTCACACAGAAAGTCGTC---CACCTTGTTACCGCCTAGTGGCAGCTGGACGGCAAGGGATGACTGAAGTA--GAGTTGGCCAAACTGCTTAGCCATGCCATGGCCACTAG--GAGGACACAGAGTTGCTGATGCATGATAGCTGGGTACCTCAAGTGTTTGCAGATGGCAATGTAAGGATCCAAAGACGTCACAGCTAAAATGATGCATTTGGTGCTCCCC s canFam2.chr8 3368968 594 + 77315194 AGGAGTCTCCTTAGAGCTCTTTTCACATCCTTATTCCTCAGGGTGTAGATAAAGGGATTGAGGGTGGGGGTGATTATGGAATAGAAGAGGGAGATAAACTTACCCTGCTCTTGGGAGTAGCTGGAAGGGGACTGTAAGTACATGTAGATGGCAGGCAGGTAGAAGAGGGAGACCACCACCAGGTGAGAGGAACAAGTCCCGAAGGATTTGCGCCTTCCCCGGGAGGACTGGATCCTGAGCACCGCGCGTGCAATGAAGCCATAGGAGAGAAGAAT---------GAGAGCTAGGGGC------ACCAGCACGAAGAAGGCCACAAGTACAGCCAGCATGGCATCGTTCATGGTGGTGTCAGCACACGACAGCTTGATCATGGCTGGCACCTCACAGAAGAAGTTGTTCAGCACCTGCCTCCCGCAGAAAGGCAGCTGTACTGTCAGGACCACCTGAACAAGGGAGTTGCCAAAGCCACTGAGCCAGGCCACAGCCACGAGCTTCTGGCACAGAG--GGTGGTACATGATAATGGCATACTGCAGCGGCTCACAGATGGCTACGTAGCGGTCCAGGGCCATGGCAGCCAAGATAATGCACTCAGTGCATCCC a score=-1573 s hg19.chr6_ssto_hap7 381100 10 + 4928567 TAAA----------------------------------------------------ATATCC s canFam2.chr14 4522959 62 + 63938239 AAACCCAGAAATAGGAAGAGCTGAATGGCACAGCCTGTGTAGCTGATGGTCTTGTCATGTCC a score=4467 s hg19.chr6_ssto_hap7 381110 139 + 4928567 CCTGGGTACCACAATAATTGAGATGTTGTCCACCAGTATGCAGAGATAAGCAACAAGCCCCATTATGAAGAGAAACATTTCCGGCTAGGGGTGGTCAAAGAAACCCCAGAGAATGAAGATCTTTCGAGCAATTGCATTG s canFam2.chr14 4523129 139 + 63938239 CCGGGACACCAAGATGATGGTGGTGTTGCCCACAAGGGTCAGGAGATATGCAATGAGAATGACCACAAACAGGATCCTCTCCAGGTAGGGGCGATCAGAAAACCCCAGAAGGATGAAATTTCCCTGAGTGCTCTCATTG a score=12885 s hg19.chr6_ssto_hap7 383044 218 + 4928567 TTTTGATTTATTGTTTATTTATTTATTTAT--GCtttaacttttaattaaaatgcttaggatacagattgactttcttttgtaaatgactgtttta-ctttttctgaaataggacatacatgcactctgataaaacagaatgaaacatcttaattcatgagaattcctgtacaaggcgctgatcctg--tgtttagagctgagctcctcacagcaGCTGCCCT s canFam2.chr1 7082998 220 - 125616256 TTTTTACTTTGTTTATATCTTTTTGTTTGTTTGTTTTAACTTTTTATTAAAATGCTTAG-ATACAGATTGATTTTCTTTTGTAAATGACTGTTTTAACTTTTCCTGAAATAGGACATATATGCACTCTGATAAAACAGAATGAAG--TCTCAATTTTGGGGAATTCCTGTACAAAGCTCTGATCCTCACTGTTAAGAGCCAAGCTCCTCACAGTAGCTTCTTT a score=134827 s hg19.chr6_ssto_hap7 383262 2617 + 4928567 ACGTAGAACCGACAGTTTTCTAGCTTGCAACAAAGTTACTAGGGACAAATAGGGAAAAAAAATCCGAAACTAAAAGTAAGAAAACCAACATGGAAGCAATCATACTTCTCATGTCTCTGATAAGAGAAGTATGGGGAACCTTTAACCAAAGGAAAATTTAAAAAAAATGCAAGTTAACTATCTAGTTCATTCACTGTTAGCTAGATTTGTTCAGTTAAGGCTTTAACCCCTTTCCAAAC----AATTTTATCTTAATCCAGCTATGCTTGCTAATAAATGAAATGCATGCACTTCCCGGAAATATACTTCACTGAGCCTCTGCATTCAGTACCTGGCAGTGAAAAAGTATGTTTCCCGAACAAGTCAGTACTGAAGACT------GAGAACTCCAACTAAATAACTATACTCTCTCCCCAATAATATGTTATCCACATTTTCCCTACCCTCACATTAGA-ATAAAGATATCCT---------CCTAACTTTT---------CATCTCCTATCTCCTGTCTTTTCCTAGGAGATCTTATCTTTTGATCTTTTACTACA------------------------------AGGGTAGAATTTAGGTTAAGATCATAAAAAACCAATTTCACATGTGACACTAAGAAAATGGAATGCTATAAAATCAATCCTCATCACCGTGGTAGGGATGCTGTTGCTTTT-ATCCTGAGTCTTTACTGCCAATAAGTGATGCTGCTTCCAAAGGAACAGCTCTACAGAAAGTTTTTGAGTTAGTGTTTCCCCCCAGCTTATTTCTACAATGGGGAAAGGCAATTTCATATTAAAAAAATCCACACAAACACACCTGGAAAAGCTACAGATGTTAACCTTTACTTTAAACACAGCAACGTAGATATCTAAGGAGATAAGATGTAAGACAAAGAGCTCAGGAAAAATCCAATA--GAGACCAAATTCTGCAAATGGAAATTTTAAAGCCCAGTGAGTA-----------------------------------------AATTTTTCCTGCATTCAGACAAGTGCTACAA------TACATTTAAGTCCTCAACTCCCAGAATTAAGAGCCCTTAAGCTGTTAACTTTGTCCTGT-----CTTCCTATTCAGAAAAATTTTCCTCTAGAATCTGTGCAAAAGTAACTGACACAC--CTGCAGTATGTGACAACATAAGAGATGTTCTCAACTTTTTCATGAGGTGAAAGTTACTTTTT---ATAACTGAAAATGAAAAAGGAAGGTGCTATAGAGGGAAATAAAATTTCACCAAAGTATAAAAGTAAAGACTGGATGAAACCTATAACTTTATAAATAAGAATAATAACAGTAACTTACACTATAATTAACTGCTCAATAGTGAATGATCTGCTACACATTCCTTGAGAAGGAATGACCCTAGCTTACCACAGTGGAAACCTGCCGCAATTACAAGGCCAGGATTCTGCCCCTTTTCTGGTTC-TCTGTTCACAAGGTAATGCCACCTTCTCCAAGGCAGTTAGAGAGACAGGTGAGCTCAGGGGAGCTTCTCTCACCAACCTGCTAACTCAGCAGGAGTGAGTTTACCCAAATGAGCTCTGGCCTCCAATGTGTATCTGTTCATAATTTTATGAAGTATCTAAATGTCATTCATTAGTTT-------AAAAAAGAATAGAAAACTCTGGACTAAGTAAATTTTGAACTCGAAAAGTTAGAAGGGGTATCAATTATATTAACAACACTTTCTTTAAAAA-TAGAATCACTTTCTTTTGAAATCAACCAGAGTGGTGAGATGTGTTTTTCTTTTCAGGTGCCCCATAATGGCACACAGCTTTACTCAGCAACCCCTGCCAGCTTCCAAGCCCCAGGATACTGACCTGCACCAGCACATGGGGCAGCATTACCTCCCCAACAGTGTGGAGAAGAGAACATTTCACCACTGGGTGATGAGAGTA--GACAGTGACTCTTGGCTTCTCAATGCTAGACATGATTGGAGACCTTTCATTGTTCTATTAGAAAAGTCCATGAAGAAGCTGTGAACAGGATCAGTCCAGAGGAGAAAAACTCTTATTTTCTCTGTCCAAACATCAGTCAATACATTGGGAGAGCCAGCAGAATCCCTCGCCCTAGCCTTGCCTCTTGAGCACACTGCACATGAACACTTCAGTGGGGTGAGCGTTCAGCTCCTAAAGGGCCATGTTCCTCTTTCCTGTGGTCTGTCCAGAAAGCCCAAATATCTCAAAGAGTTTTTCTTCACTTATTGCATTGTTCTGTCTATTTTGTTACCCAATATAAGGATTGGCACATTGGATATTATTTCATCAGTCATTAAAGCATTAAGCTCAACTTTAGATTCCATGAGGCCAGAATGATCTGCAGAATCCACCAGAAAAACAATCTCATTAATTGCTTGGAGATAATTTTTTCAAACCTGACATGCTTGCTTGTGTCCACCAAGATCAAGAGTTGTAAAAGTCATTCCAGCAATTAATAGCTTTTCTGATGTCGGATGTAGTGTTGGAACATGTTGACCCAATCTGTCATCTTTGAGCATGTGAAGAAGAGTGGTTTTGCCTGCGTTGTCCAAACCGAAAAATACAAGTTTTCCAAATTTCTTGTAGAGTCCTAGGAACTGGAGCACACTGCTGAAGCCATTGTAGATCCACTCAAAGAGGAAAGACATTATTCATGCTTATTATGGCCTGAAGG--GCTCCTCCAGCAAAGGTGGGTGGC s canFam2.chr1 7083339 2575 - 125616256 GTGTAGAATCCACAGTTTTCTAGCTTGCTGCAAAGTGATTAGGGACAAATAGGAAAAAAAGG----------AAAACAAGAAAACTAGCACTG---CAATCATACTTCTCATGTCTCTGGATAAAGAAGTATGGGTTACCTTTAGCCAAAGGAA----TTAAAAGTATGCAAGGTAACTACCTAGTTCATTCACCATTAGCTAGATTTGTTCATTTAAGGCTTTCACCTCTTTCCAAACCCACAATTTTGTTTTATTCCAGCTATGCCTGCTAATAAAGAAAAGGCAAGCTCTCTCCAGATTTATCCTTTACTGAGCCTCTGCATTTGGTACCTGGCAGTGAGGAAGTATGCTTTTCTAATAGGTCAGTGCTGAAGACTAACAATGAGAAATCCA-TTAAAGAACAATACTCTCACCTCTGGAATATGTTATCCACACTTTCCTTACCCTCACATTAGACACAAGAATACACTGAATTTAGTTCAGTCTTTTGCAAATAAACATCATC-ATCACAATTTTGTTTTGAGGAAACTA---CTTTTAATCTCTCATTAAAGAAAAATGAAGATATCTACTCATCTTAAGAAAGATCTAATATTGGTCAAGATCATGAAAATCCAATTTTACATGTGGCACCAAGAAAAAGGAATGCTATAAAAATTATCTTCATCACACTACTGGGCATGCTGAGGCTTTTTATACTGAGCTCTTAC-------AAGTGATGCTGGCTCAAAAGGAATAGCACTACACAAAGCTCTT-----AGAGTTTCCCC--AGCTTACTTCTGGAATGGAGAAAGGCAATTTCATACcaaaacaaaacaaaacaaaacaaaaacaaaaaaaacaCAAGGTAACC---------------------------------------------AATAAAAAGAGCTCATGAACAATCCCACAAAGAGACCAAATCCTGCAAGTGAGAATTTTAAAGCCCACTAAGTAGTGCTCACTTCAGCAGCACATATAATAAAGCCCACTAAATAAATCTTTCCTGGATCCAAACAAATGCTACAAATACCAGATTTTTAGGTTCTCAACTCACAGAATTAAAAGCCTGTTGGCTGTTAA--TTGTCCTGTGGGACTCACCTATTCA-AAAAATTTTCCCCTAGAATCTGTGCAAAAGTAACAGACACACACCTGCAGTGTAGGACAACATGGGAGGTGTTCTC-----TTTCATGAGGCAAGAGTTATTTTTTTATGAAACTGAAAATGAAAAAGG----TGCTATGGAGAGAAACAAAGTTTCCCAACAGTATAAAAGCAAAGAATGGCTGAAATTTGTAACTTTAGAAACAAAAATAATAA-AATAACCC-CTCTCTAAAGAAGTCCTCCACAGTGAACAATCTGCTCTACATACCACAATGAGGAATAATCCTGGCTT-CCATGGTGGAAACCTGCTACAAGTGCCAGGCCAGG-CCCTACCC--TTCCTGACTCCTCAGTGCACAAGGTGAGGCCACCTACTGCCCTGCAGCCAGACACA-------------GGGAGCTTCTCTCACTGACCTGCTAACGCAACA---------TTG-------GAGTTCTGGCCTCCAATGTGTTTCTGTGCAGAATTTTATGAAGTATCTAAATGCCATTCACTAGATCCAAAAAAAAAAAAGAATAGAAAACTCTGGACCAAGGAAATTTTTAACTCAAAAAGTTAGGAGGGACACCAATAACATTAACAACACTTTTCTTAAAAAGTAGAATCACTTTCTTTTGAAATCAACCACAGTGGTGAGATGTGTTTTTCTTTTCAGGTGCCCAATGATGGCACACACCTTTACTCAGTAAATCCT--------------------------------ACTGGCACGTGGGGCAGCATCACCTCCC-AACAGTGTGGAGAAGAGCACGTGTCACCACTGGGCAATGAGAGAGCTGACAGAGATTCTTGGCTTCTCAACGCCTGACATGGTTG---AGCTTTCCTTGTTCTATTAGAAAAGTTCATGAGGAAGCTATGAATAGGATCAGTCCAGAGAAGGAAAACTTTTATTTTCACTGTCCAAACATCAGTCAATATACTGGGAAAGCCC-TGGAAGCCCTCACTCTAGCCTTGCCTCTTGAGCACACTGCATACGAACACTTCCATGGGGCACGCATTCAGCTCCTTCAGGGTCATGTTTACCTTTTCTGTGGTCTGTCCATAAAGCCCAAATATCTCCCAGAGTTTTTCTTCACTGATTGC--------GTCTATCTTGTTACCCAAGATCAGGATTGGCACATTGGATATTGTCTCATCAGTCATTAGAGCATTTAGCTCAACTTTGGATACCACGAGGTGAGGATGATCTACACAGTCCACCAGAAAGACAATCCCATTAATTGCTGGGAGGTAATTTTTCCAAACCCGGCGCGCTTGCCCG-GCCCACCAAGCTCAAAAGTTGTAAAAGTCATTCCAGCAATTGTCAGCTCTTCTGATGTCAGATGTAATGTCGGAACATTTTGGCCCAGTCGGTCATCTTTGGACATGTGTAGAAGAGTGGTTTTGCCTGCATTGTCCAAACCTAAAAATACAAGTTTTCCAGATTTCTTGTAGAGTCCTAGGAACTGGAGCACACCGCTGAAGCCATTGTATATCCACTCAAAGATGAAAGGCATTATTAATGGTTACTATGGCCAAGGGGGTGCTTCCCCGGCGGTGGTGGGTGGC a score=1072 s hg19.chr6_ssto_hap7 385879 42 + 4928567 CCAGGCCCTCCCTCAG---------AGCACACCCCAAATATTTTCAAATAT s canFam2.chr4 83335665 51 + 91483860 TTAGACACTTCCTCAGGCAGAGTCAAGCAACCCCCCAGGACTCCCAACTAT a score=9842 s hg19.chr6_ssto_hap7 388935 179 + 4928567 GGTATGTGATAATAATGTAGATACAAGTAATATAAAAATATTTTAGAACATTGATGGTGATTCAAATTTTAGAGCTCAACCCATCTTATTTTTGTTATTTAAGTTACTAATGCCCCCCAAAGtataaatatttataaaattatttt-taaGAAGACTTTGGGAAATTATTAATGGTAAGC s canFam2.chr5 82238714 179 - 91976430 GGTATG-GATATTAATATGGATACAGATAATATAAAAATATTTTAGAATAGTGATAGTTATTTAAATTTTAGGATTCAAATCACTTTATATTTGTCATTTAAATTAATATTGACCCATACTATATCAATATTTATAAAATTATTTTGTAAGCAGACTTTGGGAAATTGATGACAGTGAAC a score=49749 s hg19.chr6_ssto_hap7 394964 1178 + 4928567 TTCTTATTTCTTACAGAAAAAGATTCTTGGCATCAGCCTCTTGAAGGCCTCCTTCATATCTTTATTTCTAAGGCTGTAGATGAGGGAGTTCAACATGGATGTGATGATTCCATAGAAGAGGGAAACCATCTTTCCCCAGTCCTTAGAGGTGGATGAAGGTGGTTGAAGATACATATAAATGGCTGTTCCATAAAAGAGGGACACCACAATCATGTGGGACCCACATGTCCCAAATGCTTTTTGCCGTCCTTCTGCTGACCTGATTTTTAATACTGCTTGAGCTATGAAGCCATAGGAGATGAGGATCAATGTCACTGGAATTAGAAGAATTAGTACACTAAAGAAGAAGAGCTCAGCCTCAATAGGCTTTGTGTCAGCACATGACAACTTGAGAAGTGCAGGCACCTCACAGAAAAAGTGGTCCACTTCCTGGTGACCACAGCGTGGCATGTTAAGAGTCAAGGAAGACTGCAGCACTGAGTTGCCGAAACCAATGAGCCATGAGAAGGCTGCCATCCTTAGGCAGAACCAATAATTCATGATGACTACATAGTGGAGGGGTCTGCAAACAGCCACATATCTGTCAAAGGACATAACAGCCAGAAGGAGACACTCTGTAGCACCTAGGGCCAGGAAGATGATGAGGTGGGCCACACAGCCAGCATAGCTGATGGTCTTTTTGTTGCAACCAATATTTACCAACATATGAGGGACTGTAGTTGTGGTATAGCAGAGATCTAAGATGGAGAGATTAGTGAGAAAGAAATACATGGGAGTATGAAGTTTGGGATCCAGAATGCACACCATCATGATGGACACATTGCCAAATATGGTGATTGTGTATGATATTAACAGGACCACAAAAAGGGGCATTTGTAGCCAAGCCCTATCTGAGAAGCCAAGTAGTATAAACTCTTTTGGGGAGCTCTCATTTTCCCAATTCATGATGACTCACTT---ATTTCGCACTCCTAA----AAAAAT---GTAAGATAGGAAA-GCAATCAATGTTTGTTTATTG---------AATACTCTTACTGGAGCTGAATTAAATTTAATGAATAGCTC---AGCATCAAATAC------AATTTACAGTCAAGTGGATAAAGCCCTTGTAAAGTATAATATGGTTATGTTTAAGCTTAAAAGTAGTTCCTGTGTTTTCAGTAGTG---------------TTTAAATTACTTTAAAGAAAATCATTA s canFam2.chr35 28097981 1200 + 29542582 TTCCTATTTCTTGATTAAGAAGATCTTCAGAATCAACCTCCTAAATGCTCCCTTTACATCTTTGTTTCTTAGTGTGTATATAAGGGGGTTCAACATGGGTGTGATGATTCCATAGAAGAGGGACACCATCTTCCCCCGGTCCTTTGAGTTGGGTGATGGTGGTTGCAGATACATGTAGATAGCAGTGCCATAAAACAGTGACACCACAATTAGATGGGAGCCACAGGTGCCAAACGCTTTTCGCCGGCCTTTGGCTGACTGAATCCTCAACACTGCTTGGACAATAAAACCATAAGATATAAGGATGAACGTTACAGGTATTAGAAGGAACAGCACACTGATAAAGAATAGTTCAGCCTCGTTTGCTGTTGTGTCTACACAGGACAACTTGAGCAGAGCAGGGACTTCACAAAAGAAGTGATCTACTTCTCTATGGCCACAGAGAGGCATCTGAAGGGTCCAGGTGGATTGCAACACTGAGTTGCCAAAGCCACTGAGCCAGGATGCAGCCGCCAGCTGGAGGCACAGCCTTTGGTGCATGATAACTGAGTAATAGAGAGGCCGACAAATAGCTACAAACCTATCAAAAGACATGACAGCCAAGAGAAGACATTCAGTGGAACCCAAGGCCAGGAAAATGAAGAGCTGGGCCACACAGCCACCATAACTAATCACCTTCCTGGTGCTGCATATGTTTACCAGCATCTGTGGAACTGTACTTGTGGTATAGCAAAGGTCCAGGAGCGACAGATTGGTAAGAAAAAAGTACATAGGGGTATGGAGTTTGGGGTCCAGATAAGACACAAGAATTATTGTCAGATTGCCAAAGATAGTCAAGATATAGGAAACCAGGAAGACCACAAAGAGTGGGAGCTCTAGCCATGGTCGATCTGAGAAACCTAAGAGGATGAACTCCTGTGGGATGCTTTCATTTACCTGGTTCATGTTAAATGGTTTAGCATTTTGTTCCCTGAAATATAAAAATTCAGTAAGTTAATAAATGCAAATAA-ATTTATTTACTGCCAGTTGGTAACAATCATTTTGTAAATAATTTACA--TAAATTATAGACCGGTGGTATTAAAAATGCAAAAAATGTATTGATAAAAATATAAATACCTTTCCAACTAT------------------TTCAAAAGT-GTTTCTGTATTTGTAACAGTGTACTAACAAAATGAATTTCAAAATCTTTAAAGTGTATCATTA a score=31393 s hg19.chr6_ssto_hap7 402586 509 + 4928567 tatatTTTTTTATCATTGGGATTAAATTTTGGCCTGGTGTTCACTTTCTTTATATATTTATGAACAA-TTTAATAATGAGGTGAAATAGCCTTAAGTCTGATATATGATGCACCCACATATAAATGGAAATGGCATGCACAAAGACACTTTACTATT-GGAACTGTATTGGAAAATTTATGAAATTTTAGGTAAAATTGCACCTAAAATTGTGTTATTAGTGACTGTAAGTAGCAATGCTAAATTTATTGTACTTGATGAATGAATGTATTTAGGCTAGTCATGGTTACTTTGGTTTAAATGTCTAAATAACATCTTTAGTTTTAAAAATGTGTTTGTAATTTGTACTATTGACAGGAGGATATTCTTGGACTGCAGCGGTTATTGGCAATGTGTGATTTGTGTTTTCTTACTTTATAGAATTATCTAATGTGATATGCTGATTTTTACAGGTAATATTTAGATATTTCCAATAATTGTATATTTGACAACCTACTAAAATGATTTGCTTT s canFam2.chr4 77880546 487 - 91483860 TAAACTTTGTCATCAT-GGGGTTAAATTTTGGCCTGGTGTTCACTTACAATACATGTT----AACAAGTTTAATTATGAAGTGAAATAGTTTCAAGTATGATGTGTAATGCACCTGCATATAAATGAAATTGGCGTGCACAAAGACACTTTACTATAAGGAGCTGTACTGGAAGATTTATGAAAGC--ATGTGAAATTGCACCTAAAATTGT---ATTAGTGACT----------ATGCTAAATTTATTGTACTTGATGAATGAATGTATTTAGTGTAGTCAAAGTTACTTTGGCTTAAATGTCTAAATAATGTCTTTCTTTTTTAAAATGTGTTTGTAATTTGTAGTATTGAT--GGGGGTATTCTTGGACTGCAGGGGTTATTGTCAATGTGTGATTTGTGTTT--TTATTTTATAGAATCATCTAATGTGATATACTGATTTTTATAAGTGATATTTAGATAATTCTAATAACTGTATATTTGACAACCTATTAAAATGTTTTGCATT a score=32640 s hg19.chr6_ssto_hap7 409621 904 + 4928567 AAAAAATGCAAGTTTTGAAGACTTCTTTATTCTACTTGGATTTTCTAACTGGCCTCATCTGGAAGTAGTTCTCTTTGTGGTTATCTTGATCTTCTACTTGATAACACTGATAGGAAACCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCCACACTCCCATGTACTTCTTCCTTTCAAATCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTGAATCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGTACAGTTCAACTTTACTTTGTTCTCGCACTGGGAACCGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGATCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCGCTTGTTGGCTGCGGCTTCTTGGGTAAGTGGTTTTACAACCTCAGCACTTCATTCCTCCTTTACTTTCTGGATACCCCTATGTAGACATCGCCTAGTGGATCACTTCTTCTGTGAAGCTCCAGCACTTCTGCGATTATCATGTGTTGATACCTAGGCAAATGAGCTGACCCTC-ATGGTCATGAGCTCCATTTTTGTTCTCATACCTCTCATCCTCATCCTCACTTCCTATGGTGCCATTGCCCGGGCTGTACTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGCTTAGGACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTTCATTCCAGTCATGTGCATGTATCTCCAGCCAC-CATCAGAAAATTCTCAAGATCAAGGCAAGTTCATTGCCCTCTTTTACACTGTTGTCACACCTAGTCTTAACCCTCTAATCTACACTTTCAGAAACAAGGATGTAAGAGGGGCAGTGAAGAGACTA s canFam2.chr35 505975 904 - 29542582 AAACAATGGAAGTTCCACAACAGATTTCATCCTCCTGGGGTTTTCTGATTGGCCCCAATTAGAACCCATCATTTCTGGGGTTGTCTTCATCTTCTACATTGTGACTCTGGTAGGAAACACAACCATCATTCTTGTGTCTTACCTAGACACCCAGCTCCATACTCCCATGTATTTCTTCTTATCTAATTTGTCTTTTCTGGACCTCTGTTATACAACAAGCATTGCCCCCCAGATGCTGGTAAATCTATGGGGTCCAACAAAGTCTATTACCTATGAAGGGTGTGTGCTTCAATCCTTTGTTGCCCTTGACCTGGGATCCACAGAATGTCTTCTCTTGGCTGTGATGGCCTATGACCGCTATGCTGCTGTCTGTCAACCTCTTCACTACACAGTAATAATGCACCCTCAGCTTTGCCAGAAGATGGTGCTCACTGCCTGGTTAGGTGGTCTTGGCAGTGCCTTAATTCTCTGCTCCTTGACTCTGAAGTTGCCAAGATGTGGACACCGAGAGGTGGATCATTTTTTCTGTGAGACGCCAGCATTGATCAAGATGGCTTGTGTCTATTCAAAAGTAATGGAGATCACTGTCTATGCTCTTGGAGT-GATATTACTTCTAATACCTCTGTCACTAATTCTCATCTCATATGCAGTTATCACTCAAGCTGTCATGAGGATCAAGTCAGCAACAAGGTGGCATAAGGTCCTCAATACATGTGGTTCCCACCTCACAGTAGTAACTCTGTTTTATGGAACAATCATTTACATGTACATGAAACCACATAGTAGCACA-TCCCAAGATAAGGGGAAGTTCTTTACTTTCTTTTACACTATCATCACACCCACCCTTAACCCTCTAATCTACACTTTAAGAAACAAAGATGTAAAGAGTGCAGTAAAGAGAATA a score=19037 s hg19.chr6_ssto_hap7 412876 347 + 4928567 tTTTATATTTTCTTTTTATTGTATTTTTGTTAGACATCAAATATTGGATTTAATAAGCTATCGGAAAAAGTGTA------TAATTATAATCCTTTATACTGTAACAGTACTA-----CACAACTTATAAAGCACATTAATATATTTTGTTTCATTAGAATTTTGGTCATCATAGAAACCCTAAAGCTTTGTTGACTATTAGCCTCTTGAAACAAAAGAAAAataagatataaacattattgttcctatgttaaagattaggaaattgagtctcagagagattaagtagtcttgtctaaatgcacgcactaacaaatggcaaatttgagtctcaaagacaggtttctcaatatcaaatT s canFam2.chr10 49346042 355 + 72488556 TTTAATATTTTCTTTTTATTCTATTGTTATTAGTCATTGAATATCAGATTTAATAAACTTTCAGCAAAAGTGTACTTTTATAATCCTAATCCTTTATGTTGTTGCAGTAGTATTACACACACCTTAGAAAGCATATCCGCATATTTTGTTTCATTAGGATTTTGGTCATCATAGAAACCCACAAGC-TTATTAATGATTAGCTTCTTAAAACAAAAGAAAAGTAAGAT-taaacattgttgttcccattctaaagatgagaaaattgagccacggagagattcagtag-cttgtccaaatgtacagctgaataagtggcatatttggatttcagacccacgtctcttaatatcagatt a score=2698 s hg19.chr6_ssto_hap7 419367 265 + 4928567 tttGTGACtttttattatggtaaaatttcaaacttagagaagagttgcaaaaaagtagtacaaaagactaacatttacccttttaccagattgagtattagtttacattttcccccaaagctttgttatatcatctatcaactatctatctatttatctatctatctatctatctatctatctatctatctacctatctatctctttttctgggctagttgagagtaagttg-------gagatgacacgttcctttatgccaaatacttta s canFam2.chr20 6802453 223 - 61280721 TTTTTAACttttaattttgacttcatttcagatttacagaaaagttg--aaagaataatataaaag-------------ctccta--------ggtata---tctcagatcccccagatgttagactttaccatct-----ttacttttttcttcatccacttttctctcttccttt---tctttgtgtgtg-------------ttttcagaaccatttgcaagtaagttgcactgcaaatatgatacct--ctttacctctaactctttg a score=3323 s hg19.chr6_ssto_hap7 419649 174 + 4928567 aaggaaaaggatgtta-ctttacataagtccagcacagt-acccaaatcagcaaacttaatatgggcacaatattattatctaatccatagtccacactgagatttcttaaattgtctcaataattttgttaatagctagtttttgaaaaaatccaggattgtacact-------gagaaatc s canFam2.chr20 6802877 176 - 61280721 aaaaccaaggacattttcctcacataactacagtataatgatcaaaatcaagata-gtaacattaatataatgctactatcaaatttatagaactcatttatattttgacaattatcctaataatgttatgtatagcaaa------agaagatccaggattaggcatttcatgttgacatgtc a score=4970 s hg19.chr6_ssto_hap7 419823 241 + 4928567 acatctcactagtctcttttcatctggaccagttcctc-accctttgtttttctacttaaacttgatacttttctgaattgtataggcaagctatt----------tctctcaatttgagtttttctcatgtgtcttcattattagaatta-gtcttcattattagaatttttaacacaaatatcactgaagtgacagcatgtcctgttcagagcatcatcacagcaggttcatgatgttggtttgtgcaaat s canFam2.chr20 6803240 240 - 61280721 atgtctcttaagcttcctttaatctggaacagttcctagactctttgtatttca---tgacattggcagtttt--gaaggacatggaccagaaattgtgtataatgtccctcaatttgagtttgtctgatgttccctagtctctaaattgaagtcct--------gcatctttagcaggagtctcacagaagttactttgggtcctttccagtgcctcctattaggaggtacgtgatttttatgtgtcccatt a score=1300 s hg19.chr6_ssto_hap7 420357 170 + 4928567 tatatcagtatgagctttataattct---tcttttgttaaattcattactactaa-------tggttaaattgtcctacaattaaatgatgg---caagcccttcaaactggcttttattttttattcatgtgtgctgatatttttggatcatttgtttactCGTTTTTTGAGTTTACCTTTC s canFam2.chr35 1307320 154 - 29542582 TGTATTGGTATAAGCTATGTCAGTTTCAATAATTTATTGAAATAGTTACCGATAAAATCCCATGGCCA---TGTCTTATAAC---ATGATAGATCCATCCCCTGCCAACTGTCtttttttttttttt--------------ttttttGAAGATTT---------CTTTTAAAAATTGCTAAAT a score=33863 s hg19.chr6_ssto_hap7 420527 956 + 4928567 TTTTTTTTCTCTCAGGTAATAGGAAATGAATGATGATGGAAAAGT-CAATGCTAGCTCTGAGGGGTACTTTATTTTAGTTGGATTTTCTAATTGGCCTCATCTGGAAGTAGTTATCTTTGTGGTTGTCTTGATCTTCTACTTGATGACACTGATAGGAAACCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTGCACACACCAATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTCAATCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGCATGATTCAACTTTACTTTGTTCTCGCACTGGGAACCACAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCACCTGCTGGCTGTGGCTTCTTGGGTAAGTGGTTTTACCAACTC---------AGCACTTCATTCCTCCTTCACCTTCTGGGTACCTCTGTGTGGACACCGCCAAGTAGATCACTTTTTCTGTGAAGTTCCAGCACTTCTGCGATTATCGTGTGTTGATACCCATG----TCAATGAGCTGACCCTCATGATCACAAGCTCCATATTTGTTCTCATACCTCTCATCCTCATTCTCACTTCTTATGGTGCCATCGTCCGAGCTGTACTGAGGATGCAGTCAACCACTGGGCTTCAGAAAGTGTTTGGAACATGTGGAGCTCATCTTATGGCTGTATCTCTCTTTTTCATTCCGGCCATGTGCATATATCTCCAGCCACCATCAGGAAATTCTCAAGATCAAGGCAAGTTCATTGCCCTCTTTTATACTGTTGTCACACCTAGTCTTAACCCTCTAATCTACACCCTCAGAAACAAAGTTGTAAGAGGGGCAGTGAAGAGACTAATGGGGTGGG s canFam2.chr35 28127276 957 + 29542582 TCTTTCTCCTAACAGGTAATACGTGGTGAGAGGTGATGGAGAATCACAACACAAGCTCTTTTGAAGGCTTCATCCTGGTGGGCTTCTCTGACCATCCCCACCTAGAGCTAATCCTCTTTGTGGTCATCCTCACTTTTTACGGGCTGACTCTTCTTGGCAATATGACCATCATCTTACTTTCTGCTCTGGATTCCCGGCTGCACACACCGATGTATTTCTTTTTGGCCAACCTCTCATTCCTGGACCTGTGTTTCACCATGGGCACCATCCCTCAGATGCTCTACAACCTTTGGGGCTCAGATAAGACTATCAGCTATCTGGGTTGTGCCATCCAGCTCTACTTCGTCCTGGCTCTAGGAGGGGTGGAGTGTGTCCTCCTGGCTGTGATGGCGTATGACCGCTATGCTGCAATCTGCAGACCCCTGCACTACACAGTCATCATGCACCCCCGACTCTGTGGGCAGCTGGCTTCAGTGGCATGGTTGAGTGGCTTTGGCAATTCTCTCATAATGGCACCCCAG---------ACATTGATGCTACCCCGCTGTGGGCACAGGCGGGTGAACCACTTTCTCTGTGAGATGCCAGCACTAATTGGCATGGCCTGTGTAGATA-CCATGAGCCTCGAGGCACTGGCATTTGCCTTGGCCATCTTTA---TCATCCTGACACCACTCATCCTCATCCTCATCTCTTATGGGTATATTGCACGAGCGGTATTTAGGATCAAGTCAGCTACAGGGCGAAAGAAAGCCTTTAACACGTGCAGCTCCCACCTAATTGTTGTCTCTCTCTTCTATGGCACAATCATATACATGTACCTCCAGCCAGCAAACACTTATTCCCAGCACCAGGGCAAGTTCCTCACTCTCTTCTACACAATCGTCACTCCCAGTGTTAACCCCCTGATCTACACACTGAGAAACAAGGATGTTAAAGAAGCCATGAAGAAGGTGCTAGGGAAGG a score=17433 s hg19.chr6_ssto_hap7 425627 439 + 4928567 TACTTTTCAAACCAGTCGAACAGACTTTATGCAGTATTATCACAGATAGGACAACAGGAATGAGTTTTCTCACTTTATC-----AAACTGAAGGGAAGAAAATAGGTGGCTTGTATAACTTCTGGCAACTTGTATGTG------------------------------AAAAAATCAGGGTAAGGACAATACATTTTTAGCTCTGACAACCCATTCCTATGTCAACAACACTGAAGGCAAAATAGAAGCCCTGAGATGCTCCCCTTGTCAGCCCTAAACCTTATGAAAACATTTG-TGAACTGGGATTTCCAAAGCACACATGAATTTGTATGGCAAGCAACTTTACTGAAGAACTAACAGTGAAGCCAGCTTTTTCCCAGATAGGAATGAAGGCTAACCTCATGGAAGCATCAGCTTCTTTTGCCCTGTAAATTTCTCCTCCCCATTCAGACAGATGTCTCCCAGTCTTTGTCC s canFam2.chr21 27467997 465 + 54024781 TACTTTTCAA-CAACTTACATGGACATTATGCAATTTTAGCAAAGTTA---CAATAGG--TAAATTTTCTCACTTTATAGATTAAAAAAAAAAGGAAGAATATGGGAGGCTTGCCTAAGCTTAAACAACTTGTataaagcaaaacaaaacaaaaaaacaaacaaaaaaaaaaacaCAGGGTAATTATAATATATTTCTAGCTCTGGATGTTCCTTCTGATGGT--CAACACCAAAAGCAAATTAGAAGCTCTAAGATTCTCCTATTGCCAACTCTAAATCTCAAACCAACACTTGGTGAACTGGCATTTACACAGTACACGTGAATCTGGGCCACA-GCAACTTTACTGA-GAACTAACAATGAAGTCAGTCTTTTCCCAGATAAGAATGGAGGTTCAATGCACTGAAACACCAACTTCTTTAGCCTTGTAAAGTTCTCCTCCCCCTCTAGAAAGATGCTTCCCAATATTTATCT a score=1969 s hg19.chr6_ssto_hap7 426066 49 + 4928567 ACTGTATCTTATACTTGTTGCTGTGCAGCATATTCTTATATACATACTC s canFam2.chr21 27469030 49 + 54024781 ACTTCATCTTATACTTAGTCCTGAACAGTGTATTTTCAAAGGAATATTC a score=29376 s hg19.chr6_ssto_hap7 427511 591 + 4928567 taaaataaagtcactcttgctcctgca-ctgggggtggggttaatttcatccaaagcacatgctacacagtgtaggtgagatggGATAACTATTGGGAGGCAACAGTAATATCATAGTCTCTATTGTCTGCATGAGAAAACTGACCACAacagagctagtaagtgatgaagcttggattcaaatgtgggctttctaacttcacagtttgttcttaatcactaggcaatTGTTCCTCCCTATAGACATCTGAACTCTTTAAAACAAGAAGGTGAGGATTCAGTATGTACATTTCTTGGCTCTTTGCAACTTGTCATGGGAAGGTCTTCATTTTCTCCTATTCTTT--GTTTTAACACCTAATATTTGAACCACACTGAATTTATCTTACTCTCTTACTGTCCTGAGGATGTTCACAAGAACTTTTCCT--TCAAGGTTAAAATGTGTCACTTATACCTCAACCAAACATTTCATATTTGCAGCAATTATGCTTATTCACATAAGGTTGTAAATTCCTCAAGGCTCAACCAATGGCTGAGAAGTGTTTTGGGCCACTGTACCTTTAACAGGCCATTGGTGCATGAAGAACATCAGCGA s canFam2.chr8 44721506 591 - 77315194 taagattaattagggcccactcctaaatctggagttggagtcaatttcactcaaagcatatATTATAAAATG-GGAAGAGATGGAATGACAATTGGGAGACAACTAGAATGTCATTGTCTCTATGATTTCCAtgagaaaattgaccatcatc-agccaataagtgataaagcatgtattaaatttggatctctctgacttcagagtttgctcttaaccactaGGTAGTAGTTTTTCCCTATAAAAAGCTGAGTTCTTTAGAACAATAAGGTGAGAATACAGAATGCACATCCCTTGGCTCTTTGCAACTTATCATAGGAAGGTCATCCTTTGATCCCATTCATTCATTCTTTATGCTTAACTTTTTAACCACACTGAATTCATCTTGTTCTTTTAC-GTCCTGCTGATGTTCACAAGGGCTTTTCTTGACAAGGGGAAAAATGTATCACTCATACTTCAACAAACCATTTTATATTTGAAGCAATTATGCTTATTCACATACAATTATAAAATCCTCAAGGCTTGACCAATGGCTGATATATGTTCCAAGCCACAGTACTCTTGACAGATCATTG--GCACAAAGCATGTCAATGa a score=4940 s hg19.chr6_ssto_hap7 434760 148 + 4928567 TGTGTTGAATGAAGTCTTTTAA-------ATAGTGAGAACCTGATGCCAAAATGACCTTAAAACTATGTCAAAAGAGAAAAACCCCACTTAAGACAGCAATAAAATAGGGTTTGGATGAGCATTTCAATCTTGAGGAAAACCT--AACCTGTTTGCA s canFam2.chr8 20444374 157 + 77315194 TGTATTAAATTAATTCTTATAAGCTTGATATGTTGTTTTACTTAGGCCAAAATGACCTTCAAAATATTTCAAATGAATGAAGAACGACTTAAGATAGCTATAAAAGATGCTTTGAATGAAAATTCCCAACTTCAGGAAAGCCGGAAACAGGTTTGTA a score=11700 s hg19.chr6_ssto_hap7 444758 381 + 4928567 GCATACTGAGCAGTATATATTCCCTGGAAATGCAAAGTC--------CAAATAAAACCTTTCTGTGGGTTTTCCAGTCCACTGTTCTGAGTATTCTTTATTCTGAGATTTTTGCATATAATTCTTAGGAAATCCTGATTTTTCACTGTGTCTAGATTTCACTCATGCCTCTGAAATGAATGTTTTTTACAGGACTTGAAGGTAGTATATACATTAGCCAAGGACGGAGGATAATTTGAGAGAGTCAGATGAACTGTAATGGGTTTTTATAGCAAAGCTTTTGACAAAAATCGTTCTGTGTTTTGCCTTCAAAACTAGAAATTACTATATACTTCTGTATATAAGACTAAGTTAGACAAACTATACCTTAACTAATAAAAATGATCAAAG s canFam2.chr1 71796868 345 - 125616256 GCATACTGATCA---TGCATGACCTAGAGGTAGAAGGTAGTTGAGCGCAAACAAAACATCCCTACGGCTTTTCCCCACTACTATTCTCAATATTCTTTAT-CTGAAATTTATATGTATTTCCTTTAGGAAGTCTTGCTATTTCACAGAGTTTGGAAGACATGCACAGTTCTGAAATGAGTCATATTGACAGGCCTGGAAGGTAG--------------AAGAACAG--------------------------CCCTAAACCATCTCTATAGCTAAGCTTTTGGCATATATTTTGCTGGATTTTGTTCCCCAAAGTAAAGATTACCATATTTCTCTGTATATAAGACTAAGTTAGACAAAAGAAATCTTAACCAATAATAGTGATCAAAG a score=7817 s hg19.chr6_ssto_hap7 445617 364 + 4928567 TTTAGCACTTCCAACTTTTAATGATACAGGTTTTGTACATCATTTGCATTTAACATTTACATCA-GTAAAAAGACATATTGTTT--GTTGAGGTAATCAAGTTGCTTTTTGTTCCAGAAATGCAAATTATTTTTTTCTCATACTGATTCTGATTCTAACACAGTTAGTTCCAAAAGGCATTCCTGGCTGTTCCAAATTGTGCA------CGGAAATGCTTCCAGGTTGTGTTTCATTATTAATATCACTTCCTTGTTATCTCACTGATTC-GAAGACTCATTATTATAGTATGTAAAAGGAAAGTATCAGAAACTTTTTCATACTTTTTGTCCCACTATTCCACTCATTTCaaaatttaataataaattattta s canFam2.chr3 14831306 344 - 94715083 TTTAACACTTCCAACTTTTAACAATACAGCTTTTGAGCACAATTTGTAACAAACATTTACATGATATGAATAAGTAACTCATTTTGGTTGAAATCATCAAGCTGTTTTTCAATCTGGAAATGTAAA-------TTTGTTATATTAGTAGTAATTTTTTCAC----AGTATTAAAAGGCTTTCTGGGTTCCTCTGATTTGTGCAAAATGTCAGTAAGTTCTCCAGACT---CTCCATTATCAAGCTTATTCATTCTTTA--TTACAGACTCAGAAGACTCACTCTTATATT-------------TTAGTGGAATATTTAACATA-TATTTGATCTGTTATTTCACAAGTCCCTGATTTTGAAAAATATTTATTCA a score=1215 s hg19.chr6_ssto_hap7 446231 293 + 4928567 TATACTATTTTTACAATTAGCTTGAACTAATAAATTCATTTTACTAATTTTTTTACTACTTAACACAGTTACTATCTCTGTAT---GTACCAACCAGTATAGAACTATTTTAATATATTTCCATAATATAATGTGCCTACTA---GCCAAGTATAATCCTTGCTGAACATGTTTACAAAGA-----GTCTCGGAGACATAACATATTTTGCAAGAACATGTAAAGCGATATTTGATTATGAGACAAGAATTTGTTAGATAAAACCATAGCAACCTACTCTAACTGTTCAATAACTTCATTTTAT s canFam2.chr14 58076119 246 - 63938239 TATCCAATTTATACAACTAGCTTGAAA-AAGAAACTCATATT---------TCTACAACTTAACA-----ATTAAACTTATATTAGGTGCCAA-------AAAACTGGCAT--TGTATTTGTACAATTTGTTGTTTTGACAAAATGACATGTGAAATCAT-GTTAAATA-------AAAGATTACTGCCTTTGAAACAAACCATGCTTTTAAAAT---TGTGAAG-AATGTGTGACTGT----CATGATTTT-----------------CAACTT-CCCTTCTGGTTCAAAGATCAAATTCTAC a score=26269 s hg19.chr6_ssto_hap7 446572 886 + 4928567 TAATGCCCCCTTTACATTCTTATTCCGCAGGGTGTAGATAAAAGGGTTGAGTGAGGGAGTCACCACTCCATAGAAGAGGGCCATGAACTTGGGTTGATCCCTTGAGATGGAGGAGGGGGGCTGAAGGTACATGCTGATGGCTGGGCCATAAAATAAGAAAACTACAATAAGATGGGAGGAGCATGTCCCAAAGGCCTTTTTCCTTCCCTTGGAAGATTTGATCTTAAATACAGCACTTCCAATACTAGCATAGGAAGCAAGAATTAAGCATAGTGGGACAGCTAACATAAAAATGCATAC---CACAGAGAGTGTGAGCTCGTTAGAACCCTTTTCACCACAGGCAATCTTTATCAGAACAGGAATCTCACACACCAAGTGGTCCAGTTTATTGAGACCACACAGTGGCAATTGTAATGTGGCAGTGGCCTCTGAG--ACAGCATAGATTATTCCAATTAGCCACACGGTGG----AAACTAAGGATACAGACGCGCTGATTCATGATGAGGGTGTAGTGAAGAGGTCTGCAGATGGCCACATAGCGATCAAAGGACATAATAGCCAAAAGCAAACATTCTGTTCCCCCCATTATGTGAAAGAAATAAAGCTGAACCGCACACCCCATATAGCTGATGGTCTTCTTAGAGCTTCCCAGGTTAAACAGCATCTGAGGGACAATGCTTGTGGTATAACACATGTCCAAAAAGGAGAGGTTGGTGAGGAAGAAATACATGGGGCTATGAAGACGAGAGTCTAACCTGGACATGAGAATGATTGTGATGTTTCCCATCACGGCTATAGGGTACATTATAAGAAGACTAGTGAACAGAGGAAGCTCTAGCCAAGGGCGGTCTGCAAAGCCTAGCAGAATAAATTCTTCAGGGTGGCTTTC s canFam2.chr8 3368979 888 + 77315194 TAGAGCTCTTTTCACATCCTTATTCCTCAGGGTGTAGATAAAGGGATTGAGGGTGGGGGTGATTATGGAATAGAAGAGGGAGATAAACTTACCCTGCTCTTGGGAGTAGCTGGAAGGGGACTGTAAGTACATGTAGATGGCAGGCAGGTAGAAGAGGGAGACCACCACCAGGTGAGAGGAACAAGTCCCGAAGGATTTGCGCCTTCCCCGGGAGGACTGGATCCTGAGCACCGCGCGTGCAATGAAGCCATAGGAGAGAAGAATGAGAGCTAGGGGCAC---CAGCACGAAGAAGGCCACAAGTACAGCCAGCATGGCATCGTTCATGGTGGTGTCAGCACACGACAGCTTGATCATGGCTGGCACCTCACAGAAGAAGTTGTTCAGCACCTGCCTCCCGCAGAAAGGCAGCTGTACTGT--CAGGACCACCTGAACAAGGGAGTTGCCAAAGCCACTGAGCCAGGCCACAGCCACGAGCTTCTGGCACAGAGGG--TGGTACATGATAATGGCATACTGCAGCGGCTCACAGATGGCTACGTAGCGGTCCAGGGCCATGGCAGCCAAGATAATGCACTCAGTGCATCCCAGCCAGTGGAAAATTGCATACTGTACTGTGCAGCCACCGAAGCTGATGGTCTTCCTGGTGCTGCCCATGTTGACCAGCATCTGTGGGACAGTGGTGGTGGTGTAACAGAGGTCCAGGAAGGAGAGGTGGCTGAGAAAAATGTACATAGGGCTGTGGAGTTGGGGGTCCAGTCTGGACACCAGGATGATGGCAATGTTCCCCAACATGGCCAGAAGGTAGGACACCAGCAGGACCACATACAGAGAGAGTTCCAGCCATGGCCTGTCAGAAACACCTAGAAGGATGAAGTCCTTGGGGGGACCCCC a score=58384 s hg19.chr6_ssto_hap7 466642 1096 + 4928567 TCCAATGCAAAGCATTTTAGTAGGTTGTCAAATATACAATTATTAGAAATATCTAAATATTACCTGTAAAAACTAGTATATCACATTAGATAATTCTATAAAATAAGGAAACACAAATCACACATTG-CCACAACCTCTGCAGTCCAATAATATCCCCCGTTGATAGTACAAATTACAAATACATTTT-TAAAATAAAGACATGATTTCGACATTTAAACCAAAGTAACTATGGCTAACCTAAATACATTCATTCATCAAGTACAATAAATTAAGCATTGCTACTTATAGTCACTAATAACAAAATTTTAGGTTCAATTTTACCTAAAATTTCATAAATCTTCCAATACAGTTCC-CATAGTAAAGTGTCTTTGTGTGTGCCATTTTAATTTATATGCGGGTGCATCATATATCAGACTTAAGACTATTTCACTTCATAATTAAATTGTTCATACATATATATTGAAAGTGAACACCCGGCCAAAATTTAATCCCAATGATGACAAAATGTAAAATTGTTTTAAATTCTTGAATGCATATACTGATTTGTTTAATTGCCTGCATACTACTTTTTTTAATTAGAGACTATCAAAGTAAGTAATAAGAATTTAAATATTAACTCAAAAAAAGATGAAGCCTTCAACCTTCCTACAATAGTAACAAGCATTTTAAATAACAATACAAGGAGTCTGTAAGCTAAAAAGTAACTTCATATTCATTGCAAAACTTAAAATACCAGTGAATTGAAGATAAGATTGAGGTCTAAAATATTTGTACTGTATTGTAAAATACAA---TTTAAAATGTGCAGTTAATTTGCTTGTGGACATGTAATGGAATGTTTTTCAACAGTAATGTTATGTT-AAACAC-ACTTTAAATGGTCACTCT--AAGCAAACATAACCTTACTAGCAAGAAAAGCGAAAAATTAAGGC--TTTCATGCTATCTATATCTACTACACAAAGTCAAAAGTCAAATAGAGCTTACAATGTGGCAAAA---TATTTCTAACTT-CTGTGACATTAGTTGCTTCACCTCAACTCAATACTTATCATCTTATCTTTATACAAACTCAAATGCTAGTTATCTTTACTATCCATAAATACAa s canFam2.chr4 13602824 1071 + 91483860 TCAAATGCAAAACATTTTAATAGGTTGTCAAATATACAGTTATTAGAATTATCTAAATATCACTTATAAAAATCAGTATATCACATTAGATGATTCTATAAAATAA--AAACACAAATCACACATTGACAATAACCCCTGCAGTCCAAGAATA-CCCCCATCAATACTACAAATTACAAACACATTTTAAAAAAGAAAGACATTATTTAGACATTTAAGCCAAAGTAACTTTGACTACACTAAATACATTCATTCATCAAGTACAATAAATTTAGC----------ATAGTCACTAAT---ACAATTTTAGGTGCAATTTCACAT--GCTTTCATAAATCTTCCAGTACAGCTCCTTATAGTAAAGTGTCTTTGTGCACGCCAATTTCATTTATATGCAGGTGCATTACACATCATACTTGAAACTATTTCACTTCATAATTAAACTTGTTA---ACATGTATTGTAAGTGAACACCAGGCCAAAATTTAACCCC-ATGATGACAAAGTTTAACA---ACTAAAAGTTTTCAAAGTATTTCCTAATTTATTTAATCACATGAATGCTATTTCCTCTTATTAGACACTATCAACATAAGTAACAAGAATTTAAACATCA----AAAAAAAAATGGAGACTCCAACCTTCCTAAAATATTAACAAGCATTTTAAGTAACAATAC-TTCACTCTGTAAGTCAAAAAGTAATTTCATTTTCATTGCCAAATTTAAAATATCAATAATTTGAAGATGAGACTGAGGCCTAAAGTATTTGTACTAC-TTGTAAAACACAAATTTTAAAAATGTGCAG-TAATTTGCTTGTGAATATGTAATGGAATGTTTTTC-ACAGTAATGTTCTGTTAAAACACTACTCTCAATGGGCAGCCTAAAAATAAACGTACCTTTACCGGCAAG-AAAGTGAAAAATTAAGGCCTTTTTATCCTATCTATAATTGCTACCTGAACTCAGGAGTCAAATAGAGGTTATAATGCTGCTAAATATTATTTTTAACCTAATATATTGTCAGTTACTTTGTCTCCGCTCATTAC-------CTTATCTCTACACAAATTCAAATGCCAGTTAACTTTATTATTGTTAAATGCAT a score=10956 s hg19.chr6_ssto_hap7 468368 588 + 4928567 TCCGGCAGAGACCCGGGTGAGACGCGCTGA-------------------------CCATGGGCCTGCGGAGGGGC------TGGGGGTTC--AGGACCTCCCGCAGCCTCTGCCCTGCAGGCTCCAGGTGCCCTCGCTGTGGCT------CCCCTCGCGGGCCCAGGCC-------TGAAGAAGCCGCGAACCTCTCTTC----CCTACCCCACCTCGGTGACAGATGGCAGCT-CCTCTCTCAGCCCAGACCCCGCCAGCCTCCATGTCTCCCGGCCCAGCCCTGCGGGGCCTAAACTAAGCCCCTGCCGAGCT-GCTAGGATGCAGCGCATTTGAGTGGCTGCGGGCGTGGGGGGCCGGGA--AGCATGGCGACCGCCCCAACTCGCAGCGGAGGCCGTTAGGGTGT-GGAGGGCGCGGGAAGGTGGGTCG------------------------CCTGCCACTGGGGCGCGG------GCAGATC------------GGACCGCTCTGTCCCAACTGGTCGAGAC-CGACCTAGTCCTGACGACAG-GAACAACGGCATTAACAACGGCCGGAAGGTGAGCGGTGT------------------------------CCCAGACAACGACGGATAG--CGGCCACCTGGCCA-------CTGGTCTTCCTTCTCTACCAGACCTGTATGTGGGAAGAGAGAAGTGGTGGAACAACAGGCCACAt s canFam2.chr27 10354525 708 - 48908698 TCCGGCAGAAAGCGAGGTGAGAAGCGCAGGGCGGTCGGTCCCGGGCCCTCCAGGCCCTCGGGCCTGAGGCGGGGCGTGAACTGGGGGGCCCAAGGAGAGGTCAGGAGCTCGGACCTGCAGACACCCAGCGCCCTCGCCGCAGCTGCCCCCCCCCCCCCCCGGCCAGGCCCACACTTTGCAGCAGTTGTGAGCCTCTccccacccccacccccaccccGGCGCCC-AGGGCTGCGGCCTCTCGGAGCG-GGACCTCGCCGGCTGCCCACTCTCCCGGCCCAGCTCTGCGGAGCCTACGCGAAGCCCCCGCCCAGCCAGCCCGGC--CGGAGCCTTTG---GACGTCGGGCGTGGCGGGGTGAGAACAATATGGCGGCCGCTCAAA--CGCCGGGCCGGCCCTTGGGACCTCGGAGGGCCTGAGCAGGCGGGTCTCCGCGCGGACGTAAGCTCGGCCGCCCTGCCCTCGGGCTTTGGCGCCCCACAGACCCGGGCCCCGGGATGACCACTCCGTCCCAGGTGGATGAAACGTCACCTA---CGGCCAACAGTGGACAGAGGCCCT---AACGGCCGGAAGGTGAGCGAAGCTCCTCCCCGCCCCCCGCTCCCCGCTCCCCGCCCCGGTCGCGACAGGTGGAACAGTTGATGGGCCAAAGGCGGTTGGTCTTCGTTCT---ACAGACATTGCTGTCGGAAGATCGAAATGGGAGAATTACGAACCGCGT a score=43734 s hg19.chr6_ssto_hap7 471139 883 + 4928567 TCCTTTTGTGTTTTTAAGAACAGTCTTCCCTATGAATTTTACCAAAAAGTGTACTCAGTACAGTAGTTTACTAACTCTACTTTTGTCATACACTAGAAACATCTT-AATATCTACAAAGACTAGATGTTGAAAATTAGGACTAATTTGTCCACTTATATGCACTATATACACAGCACAGTAAAAGAAAATGCAGACATAAGGGACAATGGTAAAGTGTGCCTCACCATAAACACACTGGTATTTCAATTACCCTTTGCCCTTTCTGCTCCTCTTTCCTCCCTGAGCCAACACACATATAGTAATGTGTACTGCTCAGATAAGTGGTTTGATC-------------CATTTCCCAAAGACAATATTTCATATGAAT-----CAAAAGGAT-ATCTACAAA--GTGTTATTT-ACTCCCTCTACTTTTAACATACTTTGTGCACTTCTA--------GAAAGACTAGATGTTTCAAATAAGGACTTAAATTTGTCCACTATATACACAG------------------------GTAACAATGG-TTATATCTGAAAGTGTCTTCTAAATAGGAACATTCTGGTCTAAAATCTTTCATTCCTTCTAACTCCTCTCTACCACCAACCTAGTGGAT------ATAGGCATATGTGTCATTTAGAACTGATGTTATCATTTCACTTCCAAAAGTCCTTTTCAGAAGATAGCCTTTCTATGAATTTCAACA--AAGTGTACAAAAATAGAGTTAGTAAACTAACTCTCATAAATTGTTATAAATTGGCAACCTCTTTAATATCTAGAGACTAGACTAGATATTATAAAATTAAGACTACTTCATCCAGTATACACACAATATATACAGTATAGCAAAGTTAAATGCAATGCATGTAACATATAG-GTAATGGATTAAGCTGAAATTTTCTAGTAAACATTAGCAAAACACTTTTT s canFam2.chr1 79655147 906 - 125616256 TTCACTTCTAGTTTTCAGAATAGTCTTTCCTATGAATTTAAACACAAAGTGTACACTATGTATTTGTTTACTA------CTTTTGTCATACACTGGCAACCTCTTTAACATCTAGAAAGACTAGATGTTGTAAATTAGGACTCATTTGTCC-TTTATATACACTATATACATAGCTAAGTACAACAAAATGCAGACCTACAGGACAATGGTTAATCCCACCTAACTATAAACATACTGGTGT----AAAGCCCTTTGCACTTTCTTCTCCTTT---CTCCCTGAACCAGCACAGATATA-TAATGTGTGCTGCTCTGAGAGGTGGTTTGATCACTTTGATCATACCATTTTCAAAAGATAGTATTTCATATGAATTTTAACAAAAGGATTATCTACAAGATGTGTTATTTTACTACCTCTACTTTTAACATACTTTGTGCACTTCTAAACATCTAGAAAGGCTAGATGTTTCAAATAAGGACTTAAGTTTGTCCACTATATACACAGTAGTGTTGAATAAACTACACACATGTAACAATGGGTTATATCTGAAAGTGTCTTCTGCATAGGAACATTCTAGTCTAGAACCCTTCATTTCTCC---CTTCTCTCCACTGCCAACCCAGAGGGTGAGTAGACAGGCACATGT--CACTGAGATGTGAC--TACAATGTTCTCTCTCAAAGTCCTTTTCAGAAGACAGCCTTTCAATGAATTTTAACACAAAGTGTACAAAAT--GTGTTAGTTTACTAACTCTACTT--TTGTCATACATTGGCAACCTCTTTAATATCTAGAGACTAGA-----TATTATAAAATTAGGACCTATTTGTCCAGTATATATACAATATATACAGT----------CGAGTTGAATGCACATAACATATATCGCAATGGAT-AAGCTGAAATTTCCTAGCACACACTAGCAAAAAATCTTTT a score=115666 s hg19.chr6_ssto_hap7 472341 2527 + 4928567 GCAATATCTTCCTTCCAATCTCCCTCAACCCAATGAACATGTACAGAGAGGACGCTGTTCACAGAGGTGGTTC-AACAATGCCAGTTCCAAAAA--GTATTTCTCATTACT-TTTAAAAGATATTTACAGAAAGTGTTATTCTACTACTTCTATTTTTAAATACACCAAGCACTTCCAAATATCTAGAAAGATTAAATATTTCATATAA-------CTTGTCCACCATGTACATGGCACTGTTAAATAAAATTGCACACACATAACAACAGTTATAATCTGAGGTATCTTCTAAACATGACCA---TTTTGGCCTTGAAGTAGTCCTTCC-----TTTCTTCTCTCTGCCTTTATTTCAGTAGACAAGTATAGGCATGTGTCATACTTTAGAAATGGTTGAACAAATTTAGATCCAAAAGTTATTTACAGAAGACAAGGTTTCCTATGAATTTCAACACAAAGCTTACAAAAAGTGCTAATTTTACTAAGTACTTTGTCATACACTGCCAGCCTCTTTAACATCTAGAGACTAGATGTTGCAAAATTAGGACTCATTTGTTCATTATATGCGCTATATACAGAGCAAAACACAATGCACAAAACATACAGAAAAATGGT---GCCTGAAAATGTGCAAGTATGAGCACACTAGCATGTTACCTTTTGCAGTTTCATCCGTCCCAGCTCCTCTAAACTACTGAGCAAGTATAGACAGTACTATACCACTCACAAAGATGGCTTAATAATTCAATTTCCAAAACACAGTATTTCCTATGAATTTCAGCAAAAAGACATTTACAAAGTGAAATTTTGCTACCTCTACATTTAACATACATCAGGCCCTTCTAAACATCTAAATAGACTAGCGGTTTCAGGTAAGAAGTTAATCTGTCCACTATGTACACTGCAGCCTTGAATAAACTGCATACATGTAACAATAGTTATAATTTGAAGGAGTCTTCCAAATGTGAACATTCTGGCCTAA----AAATCT----TTCCATCTCCATCAACCCAGTGGGCAAGAATGCTCAAGTTTTCAGAAGACAATCTTCCCTAGGAATTTAAAAACAAAATGTACAAAA-ATATTAGTTTGCTAACTCTACTTTTGTAATTCACTGGCAACCTCCATAACATCTAG-AAAGACTAGATGT---AAATTAGGACTTGTTT-TCCTCTATATACACTTTATACATAGATAAGTAAAAGAAAATGCACAAACATAAGATATAATGGTTAATCTTGCCTCACTGTAAGCACACTGGTGGCACAGAGCTCTCTGCACAGCCTCCTCCT-CCTCCTCTCCTGAACTGGCGCAT-AATACAATGCATATTACTCAAC-TTGTGGTTTGGCCCTTCCCCCTA----AAACAATGTTTCATTCGAATTTTAACAAAAAGATACTTACAAGATGTGTTATTTTACTACTTCTAGTTTAAACATATATCAGGCACCTCAGAACATCTAGAAACACTAGACATTTCAAAAAAGTG--TAGCATTGTCAATGATCTATACAGTAGTAG-GGAATAAAA--CGCACACAAAACAATGGAAAGAATATGAGAATGTCT--TCTGAATATGACTAGTCTGGCACAGAACCTTCTTCTTTTCCTTCTC-AGGTCTTCTTCTTCATGCCCTCTAACCCACTGAACAAATGTGGTTGTGTCTGTCGTTCCTGGTATGGCTTCCAGAAGTGGTCCAACAATTCCATTGCGAAAAGCCATTTCCAGAAGACATCTATTTTCTATCATTTCTTTTTGAA-----------CAAATGAGAATTTATAAGATGTGTGATTTTCTA-----ACTTTATCATACATC-ACAACCTCTTTCCATCTAGAAGGGCTAAATGTGGCAAATGTTTTCTATTTAAAAGTTGGGGCGGGGGCAGTTGAGAACCGCTTTCTCACTTTACACACGCAGGGCCTTCTATAAACGGTGGTAATTAAATCTTCCCAAAGGGTAGTGGGCATCTCCAATACGCCAAATGTGGCCTG---TTCCACCACTTCTCTCTTCCCACATCCAGGTCTGGTAGAGAAGGAAGACCAG-------TGGCCAGGTGGCCG--CTATCCGTCGTTGTCTGGGACA-------------------------CTGCTCACCTTCCGGCCGTTGTTAATGCCGTTGTTC-CTGTCGTCAGGACTAGGT-CGGTCTCGACCAGCTGGGACAGAGCGGTCC------------GATCTGC------CCGCGCCCCGGTGGCA-----------------GGCGACCCACCTTCCCGCGCCCTC-CACACCCTAACGGCCTCCGCTGCGAGTTGGGGCGGTCGCCATGCTTCCCGGCCCCCCACGCCCGCAGCCACTCAAATGCGCTGCATCCTAGC-AGCTCGGCAGGGGCTTAGTTTAGGCCCCGCAGGGCTGGGCCGGGAGACATGGAGGCCGGCGGGGTCTGGGCTGAGAGAGG-AGCTGCCATCAGTCACGGAGGTGGGGTAGG---GAAGAGAGGTTCGCGGCTTCTTC-AGGCCTGGGCCCG---CGAGGGGAGCCACAGCGAGGGCACCTGGAGCCTGCAGGGCAGAG---------GCTGCGGGAGGTCCTGA----ACCCCCAGCCCC-----------TCCGCAGGCCCATGGTCA------------GCGCGTCCCACCCGGGTCTCTGCCGGAACTc s canFam2.chr1 79656053 2632 - 125616256 GCAATTTCTTCCCTCCCACCTCCCTCAAACCACTGAACAAGTATA---------CTGTTCAGAGAGGTGGTTTTAGCAATTCTATTTCCATAGATAATATTTCCCATCAGTCTTTAAAAGCTATTTACAAGAAGCGTTACTCTACT---------TCTAAATACATCAAGCATTTCTAAGTATCTAGAAAGACTAGATATTTCACATAAGAACTAACTTGTCCACTATGTACATAGCACTGTTAAATAGAATTGCACACACCTAACAACAGGTATAATCTGAGGTATTTTCTAAATATGACCACCATTTTGGCCT-AAACTATTCCCTCCCTCACTTCCTTCTCTCCCCCACTAATCCAGTAGACAGGTACAGACATGTGTAATGCTT-AAAGGTGGTTGAACAAATTCATATCCAAAAGTTATTTACAGAAAAAAAGCTTTCCTTTGAATTTCAACACAATGTGTACAGAATGTGCTAATTTAACTA----CTTTGTCATACATTGGCAACCTCTTTAACATCTAGAGACTAGATGTTGCAAAACTAGGACTCATTTGTCCATTATATACACTATATACACAGCAAAATAAAATGCACAGACCATACAAAAAAATGGTTTTATCTGAAAATGTCCAAGTATGAACACACAAGCATATTACCTTTTCCAATTCTTTCCCTTCCACCTCCTCCAAACCACTGAATATACAT-GATAGC-CTATATTGCTCA--GAGGTGGTTTAACAATTCCACTCCCAAGA---GTTATTTCCTATGAATTTTAGCAAAAAGATATTTACAGAGTGATATTTTACTACCTCTACATTTAACATACGTTGGGCACTTCTAAACATCTAGACAGACTAGATGTTTTAAATAAGGACTTAATGTGTCCACTATATACATAGCAGTCTTGAATAAACTGCACACGTGTAAC---AGTTATAATCTGAAAGTGTCTTCAAAATAAGAACATTCTAGCCTAAGACTAACTCTTCGCTTCTTTCTCCACCAGCCCAGTGGGCTATAATGCTCCAATTTTCAGAAGACAATCTT-CCTAAGAATTTTAACACAAAATGTACAAAACATATTAGTTTA------CTATTTTTGTCATACACTGGCAACCTCTTTAACATCTAGAAAAGACTAGATGTTGAAAATTAGGACTCATTTGTCCAGTATATACACTATATACACAGCTAAGTAAAACAAAATGCAGGAACATAAAGGACAATGGTTAATCTTCCCTCTCCATAAACACACCGG-----CAAAGCTCTTTGCACTTCCTTCTCCTCCCTCTTCCTTTGAACCAGTGCACAAACACAATGCATACTATTCAAAGTGGTGGTTTGGCCATTCCCCGCAAATTAAACAGCATTTCCTATGAATGTCAAC--GAAGATATTTACAAAATGTAT--TTTTACTACCTCTATTTTTAACATGTATCAGGCACTTCAGAACATCTAGAAAGACTAGATATTTGACAAAGGTACTTAGCATTGTCAACTATATACACAGTAGTTGAGGAATAAGATGCACACACAAAACAATGGTTATAATGTGAAAATGTCTTCTCTAAGTATGACCAGTCTGGCACAGAACCTTCTTTTCTTCCTCCTCAAGGTCGTCTACTTCATGTCCTCTTACCCACTGCACAAACGTGAACGTG--TGTTGCTCCTGATGTCGCTTCTAGAAGTGATCTAACAATTCCATTTCAAAAAGTCATTTCCAAAAGACA-----TTTCTATGATTTAAAAACAAAAAACAAAAAACCAAACAGGCATTTACAAGACGTATGATTTTCTAACTCTACTTTATCATATGTCGGCAGCCTCTTTACATCTAGAAGGCCTAGATGTGGCAAAAGTTTTCTTTTGAAAAGGTTGG--GGGGTAAGTTGAGAGCAGCTTTTTCATATTATATACACA-GGCCTTCTATAAAC---GGCCAGTAAATCTTCCCAAAGGGTGGT-----CTTCCTATTGGCCAAACGCGGTTCGTAATTCTCCCATTTCGATCTTCCGACAGCAATGTCTG---TAGAACGAAGACCAACCGCCTTTGGCCCATTAACTGTTCCACCCGTCGCCGAccggggcggggggcgggggggcTGGGGGGAGCTTCGCTCACCTTCCGGCC---GTTAGGGCCTCTGTCCACTGTTCGCCG---TAGGTGAGGTTTCGTCCACCTGGGGCGGAGTGGTCATCCCGGGGCCCGGGTCTGTGGGGCGCCAAAGCCCGAGGGCGGCCGAGCTTACGTCCGCGGAGACCCGCCTTCTCAGGCCCTCGGAGGCCCCAAGGGCCGGGCCGGC--GTTTGAGCGGCCGCCATTCTTCTCACCCCGCCACACCC---GACATCCAAAGGCTCCGCGGCCCGGCTGGCTGGGCGGGGGCTTCGCGTAGGCTCCGCAGAGCTGGGCCAGGAGAGTGGGCAGCCGGCGAGGCCC-GGCTCCGAGAGGCCGCAGCCATGGGCGCCGGCGTGGGGGTGGGGGTGGGGAGAGGCTCACAACTGCTGCAAAGTGTGGGCCTGGCCGGTGGGCAGCTGCGGCGAGGGCGCCGGGTGTCTGCAGGTCCGAGCTCCTGACCTCTCCTTGGGCCCCCCAGTTCACCCCCGGCCTCAGGCCGGAGGGCCTGGAGGGCCCGGGACAGACCGCCGCCCTGCGCTTCTCACCTCGCTTTCTGCCGGAACTC a score=31077 s hg19.chr6_ssto_hap7 482337 889 + 4928567 TTTATTCTACTTGGATTTTCTAATTGGCCTCAGCTGGAAGTAGTTCTCTTTGTGGTTATCTTGATCTTCTACCTGATGACACTGACAGGAAACCTGTTCATCATCATCCTGTCATACGTGGACTCCCATCTCCACACACCAATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATCTCTGCCACACCACCAGCTCTATCCCTCAGTTGCTGGTGAATCTCCGGGGCCCGGAAAAGACCATCTCGTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTTGCACTGGGAATCGCAGAGTGTGTCCTACTGGTGGTGATGTCGTATGATCGTTATGTAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCACTTGTTGGCTGCGGCTTCTTGGGTAATTGGTTTTACTATCTCAGCACTTCATTCCTCCTTTACTTTCTGGGTACCCCTTTGTGGACATCGCCTAGTGGATCACTTCTTCTGTGAAGTTCCAGCACTTCTGCGTTTATCATGTGTTGACACCCATGCAAATGAGCT---GACCCTCATGGTCATGAGCTCCATTTTTGTTCTCATACCTCTCATTCTGATTCTCACTGCCTATGGTGCCATTGCCCGGGCTGTACTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGTTTAGGACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTTCATTCCAGTCATGTGCATGTATCTCCAGCCACCATCAGAAA--ATTCTCCTGATCAGGGCAAGTTCATTGCCCTCTTTTATACTGTTGTCACACCGAGTCTTAATCCTCTAATCTACACTCTCAGAAACAAGCATGTAAAAGGGGCAGCGAAGAGACTATTGGGGTGGG s canFam2.chr35 1307542 889 - 29542582 TTTATCCTGCTGGGTTTCTCTGAGCGGCCTCAACTGGAGCTAGTCCTCTTTGTGGTTCTTCTGATCTTCTATATGTTTACTCTGCTGGGAAACACAACCATCATTGCCTTGTCCCACCTGGACCCACTTCTTCAGACTCCCATGTACTTTTTCCTCTCCAACCTAAGCTTTCTGGACTTGTGTTACACGACCAGCACTGTCCCTCAGCTCCTGGTTCATCTCAGGAGAGCAGACAAGTCTATCTCCTTTGGTGGCTGTGTAGTTCAGCTCTTCATATCCCTAGGGTTGGGATCCACAGAATGCATTCTCCTAGGGGTCATGGCACTTGACCGCTTTGCAGCTGTCTGCAGGCCCCTGCACTACACAGTGATCATGCATTCCCGTCTCTGTGTCCTGATGGCTTCTGCATCATGGTTCATTGGTTTTGCCAACTCCTCATTGCAGACAGTGCTCATCTTCCTTGTACCACTTTGTGGGAGAAATAAAATAGATCATTTCTTTTGTGAGATCCCCCCACTGCTCAATCTTGCCTGCGTTGACACCACTATATATGAGTCTGAGATCTTCTTTGTC---AGTGTGATCATTCTCTTTATACCTGTGACATTAATCACCGTCTCCTATGGTTGGATTGTCAGGGCAATCTTTAGAATAAAATCATCTGCAGGGCAAAGGAAAGCATTTGGGACATGTGGGTCCCACCTCACAGTGGTCTCCCTGTTCTATGGTACAGCCATCTACGCTTACCTCCAGC--CCAGCAACAACTATTCCCAGGATCAGGGCAAGTTCATTTCTCTCTTCTACACCATCATCACCCCCATGGTCAATCCTGTCATATATACACTGAGGAACAAGGATGTGACTGGAGCAATGAAGAAGGTGCTTTGGCGAG a score=4536 s hg19.chr6_ssto_hap7 484866 424 + 4928567 tctattatatctatctatctatctatctatctatctatctatctatctatctatc-atctatctctttttctgcactagctgagagtaagttggagatgccacgtacctttacaccaagtacttTTTTTTTTAATTATTAGGTCATTTTTATTCCTTTTAAATTTTCTATTTTGTGTTAATTATTTGTCTGCATTCTATGTACATAACTGTATTGGAGTTTCAGTTTCATATTAAGTTGTATAAACTTTTGTGTTCCAAGGTTATACAAATTC-----ATATGTATTTTCTTAGTTCATT--GCCTCTTATTTTG------GTTTGTTACAATTTGTGATGTTAA---AAGTCTAAAAATGTGTGCGTGGTT--AATACTATCTATTGTTCATTAACATTGTGGTTTCTTCCTTTTCTTAATGCTATAATGTTCTTTTATTAT s canFam2.chr18 43481899 314 + 58872314 TTTTTTAtatctatctatc-atctatctatctatctatctatctatctatctatctatctatct------------------------------------------------------atACTTTGCTACTTA---------TTATTTTGGATC-----AAATCCTCTATGT-------------------CCTTCTACATGCATA---------------------CACATTCAGATTTGTAAAA------GTTTCAGGGTTG--CAAATTCTATCAACAATGATTTTAGGAATTGATTATGGCTCTTGCTTTAAAGTCTGTTTTGTTTTATATGTAATATTAACAAAAATAATATGATATATATGTATTTCAAATACTATTT------------CATTGTGACTGCTTTATCTTTTTCATGCTTTTAGTTTCTTTTTTTAT a score=1018 s hg19.chr6_ssto_hap7 489305 21 + 4928567 ttgtctaagaagaaggatgtt s canFam2.chr20 6802679 21 - 61280721 ttccctaaaaacaaggacatt a score=2529 s hg19.chr6_ssto_hap7 489326 159 + 4928567 atttt----acataagtcctgcacagt-acccaaatcagcaaatttaatatgggcacaatattattatctaatccatagtccacagtgagatttcttaaatagtcccaataattttgttaatagccactttttaaaaaaatcccagatgatacact-------gagaaatc s canFam2.chr20 6802889 164 - 61280721 attttcctcacataactacagtataatgatcaaaatcaagatagt-aacattaatataatgctactatcaaatttatagaactcatttatattttgacaattatcctaataatgttatgtatagcaa------aagaagatccaggattaggcatttcatgttgacatgtc a score=4378 s hg19.chr6_ssto_hap7 489485 232 + 4928567 acatctcactagtctccttccatctggaccagtgccaccgcctttgtttgtctacttaaacttgatacttttgaattgtacaggc---aaact-------atttctctcaattagagtttttctcatgtgtcttcattattagaattagtctgtgtatttttaacataaatatcactgaggtgacatcatgccctgttcagagcagcatctcagcagtctcatgatgttggtttgtacaaat s canFam2.chr20 6803240 240 - 61280721 atgtctcttaagcttcctttaatctggaacagttcc-tagactctttgtattt-catgacattggcagttttgaaggacatggaccagaaattgtgtataatgtccctcaatttgagtttgtctgatgttccctagtctctaaattgaagtcctgcatctttagcaggagtctcacagaagttactttgggtcctttccagtgcctcctattaggaggtacgtgatttttatgtgtcccatt a score=30882 s hg19.chr6_ssto_hap7 489997 1110 + 4928567 tatatcagtacgagctttataattct---tcttttgttaagttcattactactaa-------tggttaaattgtcctacaattaaatgatgg---caagcccttcaaactggattttattttttttacgtatcctgatgttttttggagcatttgtttactGCTTTTTGAGTTTACCTGATTTTTTTTTTCTCTCAGGTAATAGGAAATGAATGATGATGGAAAAGT-CAATGCTAGCTCTGAGGGGTACTTTATTTTAGTTGGATTTTCTAATTGGCCTTATCTGGAAGTAGTTCTCTTTGTGGTTATTTTGATCTTCTGCTTGATGACACTGATAGGAAACCTGTTCATCATCATCCTGACGTACCTGGACTCCCATCTCCATACTCCCTTGTATTTCTTCCTTTCAAATCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTCAGTCTCTGGGGTGTGGAAAAGACCATTTCTTATGCTGGTTGCATGGTTCAACTTTACTTTTTTCTCACACTGGGAACCACAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACTCTCGTTTCTGCCACTTGTTGGCTGTGGCTTCTTGGGTAAGTGGTTTTACAAACCCAGCACTTCATTCCTCCTTCACCTTCTGGGTACCTCTGTGTGGACACCGCCAAATAGATCACTTTTTCTGTGAAGTTCCGGCACTTTTATGATTATCATTTGTCAATACCCGTGAAAATAAACT---GACCCTCATGATCACAAGCTCCATTTTTGTTCTGCTACTTCTCACCCTCATTTTCACTTCCTATGGTGCTATTGCCCAGGCTGTACTGAGGATGCAGTCAACCACTGGGCTTCAGAAAGTATTTGGAACATGTGGAGCTCATCATATGGTTGTATCTCTCTTTTTCATTCCGGCCATGTGCATGTATCTCCAGCCACCATCAGGGA--ATTCTCAAGATCAAGGCAAGTTCATTGCTCTCTTTTATACTGTTGTTACACCTAGTCTTAACCCTCTAATCTACACCCTCAGAAACAAAGATGTAAGAGGGGTAGTGAAGA s canFam2.chr35 1307320 1096 - 29542582 TGTATTGGTATAAGCTATGTCAGTTTCAATAATTTATTGAAATAGTTACCGATAAAATCCCATGGCCA---TGTCTTATAAC---ATGATAGATCCATCCCCTGCCAACTGTCttttttttttttt-------------tttttttGAAGATTT--------CTTTTAAAAATTGC-TAAATGCTTGGTCCTGACAGGAAACATGTGCTACCAGAGGATGGAACAGAACAATGGTAGTTCTTTCACTGGGTTTATCCTGCTGGGTTTCTCTGAGCGGCCTCAACTGGAGCTAGTCCTCTTTGTGGTTCTTCTGATCTTCTATATGTTTACTCTGCTGGGAAACACAACCATCATTGCCTTGTCCCACCTGGACCCACTTCTTCAGACTCCCATGTACTTTTTCCTCTCCAACCTAAGCTTTCTGGACTTGTGTTACACGACCAGCACTGTCCCTCAGCTCCTGGTTCATCTCAGGAGAGCAGACAAGTCTATCTCCTTTGGTGGCTGTGTAGTTCAGCTCTTCATATCCCTAGGGTTGGGATCCACAGAATGCATTCTCCTAGGGGTCATGGCACTTGACCGCTTTGCAGCTGTCTGCAGGCCCCTGCACTACACAGTGATCATGCATTCCCGTCTCTGTGTCCTGATGGCTTCTGCATCATGGTTCATTGGTTTTGCCAACTCCTCATTGCAGACAGTGCTCATCTTCCTTGTACCACTTTGTGGGAGAAATAAAATAGATCATTTCTTTTGTGAGATCCCCCCACTGCTCAATCTTGCCTGCGTTGACACCACTATATATGAGTCTGAGATCTTCTTTGTC---AGTGTGATCATTCTCTTTATACCTGTGACATTAATCACCGTCTCCTATGGTTGGATTGTCAGGGCAATCTTTAGAATAAAATCATCTGCAGGGCAAAGGAAAGCATTTGGGACATGTGGGTCCCACCTCACAGTGGTCTCCCTGTTCTATGGTACAGCCATCTACGCTTACCTCCAGC--CCAGCAACAACTATTCCCAGGATCAGGGCAAGTTCATTTCTCTCTTCTACACCATCATCACCCCCATGGTCAATCCTGTCATATATACACTGAGGAACAAGGATGTGACTGGAGCAATGAAGA a score=14099 s hg19.chr6_ssto_hap7 496375 388 + 4928567 TACTTTTCAAACCAGTCAAGCAAACTTTATGCA------GCAGAACAACAAGAA-TGAGTTCTCTCACTTTATC------AAACTGAAGGGAGGAGATAGG-TGCTTGCATAAGCTCTGGCAACTTGTATATG------------------------------AAAAAATCAGGGTAAGGACAATACATTTTTAGCTCTGACGACCTGTTCCTATGTCAACAACACTGAAGGCAAAGTAGAAGCCCTGAGATGCTCCCCTTGTCAGGCCTAAACCTCATGTCAACGTTTG-TGAACTGGGATTTCCAAAGCAGAAATGAATTTATGCGGCAAGCAATTTTACTGTAGAACTAACAGTGAAGCCAGCTTTTTCCCAGATAGGAATGATGACTAACTGCACTGAAGCATCAGCTTCTTTTTCCCTGTAAACttct s canFam2.chr21 27467997 428 + 54024781 TACTTTTCAA-CAACTTACATGGACATTATGCAATTTTAGCAAAGTTACAATAGGTAAATTTTCTCACTTTATAGATTAAAAAAAAAAGGAAGAATATGGGAGGCTTGCCTAAGCTTAAACAACTTGTataaagcaaaacaaaacaaaaaaacaaacaaaaaaaaaaacaCAGGGTAATTATAATATATTTCTAGCTCTGGATGTTCCTTCTGATGGT--CAACACCAAAAGCAAATTAGAAGCTCTAAGATTCTCCTATTGCCAACTCTAAATCTCAAACCAACACTTGGTGAACTGGCATTTACACAGTACACGTGAATCTGGGCCACA-GCAACTTTACTG-AGAACTAACAATGAAGTCAGTCTTTTCCCAGATAAGAATGGAGGTTCAATGCACTGAAACACCAACTTCTTTAGCCTTGTAAAGTTCT a score=4740 s hg19.chr6_ssto_hap7 507107 115 + 4928567 AAGCATTTGTCTAGTAAGAAAATGTA--ATTTGAAAGTAAGGTTCAGAACATTTAACCAAATGTTCAAGTAATTTCTAAACTGTATTGAGAAAATGGAATAAAGTTTCATAGATTAT s canFam2.chr8 20454369 117 + 77315194 AAGCATCTTTGCAGTCAGAAAATACACAATTTGAAAGCGAGACTCAAAAGCTTCAGCAGAAACTTAAAGTAATGACTGAATTGTATCAAGAAAATGAAATGACACTTCACAGGTAAT a score=7759 s hg19.chr6_ssto_hap7 515782 142 + 4928567 TGTACATATTGCTTTATAGCCTGCTTTTTCACTTAGCAGCATATTGTGAGAATGTTCATGGTTAGGCAGGGACTAGGCAGT---GGAGTTGGGTGGAATTTTGCAAACCATACTTAGGAGTTTGGATTCTGTTTTGTAGGACTTG s canFam2.chr20 36939148 145 + 61280721 TGTACATATTGTATTGTAGCCTACTTTTTAATTTAACAGCATGCTGTGAAAATGTTCCTGGGTAGGCAGGGACTAGACAGTAGAAGAGGTGGGCTGAGTTTTATAAGCCATTCTGTAGAGTTTGGATTTCCTCCTGTGGGCATTG a score=3009 s hg19.chr6_ssto_hap7 523363 455 + 4928567 aaaaggaggaatggagaagaggagaatgagagagaaaaaagagaagataaagggagaagatccagggagagaagaggggaagcaaaaaagagagaaacatgggagacagagagtgaaataaatcaagatacaaggtcacagagaaataagagaacaaaagaaatagagaaagTTATAAAGCTAATAGGCAGTGATTAGAACTATGTAATAAATGTGGTAAATGTATACTCTTTGAGAGCACAGATG----AAACACATCTAATATTTAGCAAAGTGATTTTCACTAGCAGGTGCTTACATGtattttatataatatttataatGAACAATTTTAATCAGAGACAAAATATGAGGAAGATGTAAAAGAGGAAGAGAGAGAGTGAATGATGAATATCAAAGATTAAAGCACTTCACTAAATCTTGTATTTTTTCCCAAAATACAGCTGGTGAAAATCTTAT s canFam2.chr14 59253120 323 - 63938239 aaaagaaaaaaagaaagaaagaagaaaaagaaagaagaaagaaaggaagaaagaagaa-----agagaaagaa-agaaaaagaaagaaagaaagaaa-----gaaagaaagaaagaaagaaagaaaga-------------------aagagaaagaaagaaagaaagaaaga---aaagcgaa------------agaa------agcaaagaagaaaaaaaTACACTCAACAGAGGCACTGAAGTTATCAATTCTTCTAATATT-ATCTAAGAAATATTTA--GGCAATTGCTCAACAATAAATAGTGAAATATCTCTGATGAG--ACTATGGC--------AAATATGAG----ATTCTAAAGTTGGGGAGAAA-------------ATAT-------------------------------------------------------AAAATTTTAC a score=772 s hg19.chr6_ssto_hap7 523829 103 + 4928567 AAGGAATCAAACAAGTCATATACCACCCGTCTTCCTGTCTGTAC----TGGAACCATCACAGGCTTTTGAGGAACTACTTTTGAACCGTTCCCC----AGAGAGGCATTTG s canFam2.chr8 73751327 111 - 77315194 AATAAGTTGCACAAGTTAGTTTCTATCAGCCCTTCTATTTGTACATTGTGAATCTAGGATAATTTTTTTCAAATGCACCTGTTCTCATTTCCCTCTTAGCAGAAGCAGTTC a score=30765 s hg19.chr6_ssto_hap7 523966 921 + 4928567 CCACAGTGATTTCATCCTTCTGGGCTTCTCTAACAAGCCACATTTGGAGAAGATACTTTTTG-GATCATTTTTATTTTTTATT-------TTTTGACTCTTGCAGGAAATATGGTCATAGTTCTTGTGTCCTTGAAGGATCCAAAACTCCACATCCCTATGTATTTCTTTCTTTCCAACCTTTCCTTGGTAGACCTCTGTTTGACCAGCAGCTGTGTTCCACAGATGTTGATTAACTTCTGGGGCCCAGAAAAGACCATCAGCTACATTGGCTGTGCCATTCAACTCTATGTTTTTTTGTGGCTTGGGGCCACGGAATATGTCCTTCTTGTTGTCATGGCTGTGGATTGTTATGTAGCAGTGTGTCATCCACTGCAAAATACCATGATCATGCACCCAAAACTT-TGTCTGCAGCTGGCTATCTTGGCATGGGGGACTGGCTTGGCCCAGTCTCTGATCCAGTCCCCTGCCACCCTCCGGTTACCCTTCTGCTCCCAGCGGATGGTGGATGATGTTGTTTGTGAAGTCCCAGCTCTGATTCAGCTCTCCAGTACTGATACTACCTACAGTGAAATTCAGATGTCTATCGCCAGTGTTGTCCTCCTGGTGATGCCCTTGATCATTATCCTTTCCTCTTCTGGTGCTATTGCTAAGGCTGTGCTGAGAATTAAGTCAACTGCAGGACAGAAGAAAGCATTTGGCACCTGCATCTCTCACCTTCTTGTGGTTTCTCTCTTTTATGGCACTGTCACAGGTGTCTACCTTCAACCAAAAAATCACTATCCTCATGAATGGGGCA-AATTTCTCACTCTTTTCTACACTGTAGTAACCCCAACTCTTAATCCCCTCATCTACACTCTAAGGAACAAGGAGGTAAAGGGAGCACTAATAAGATTGGGGAGGAGGACCTGGGATTCCCAGAATAACTAA s canFam2.chr35 29222047 924 + 29542582 CCCTGGGGGCTTCCTCCTTCTGGACTTCTCTGAACACCCAGGGCTAGAGAGAATCCTTTTTGTGGTTGTCCTCACTTCCTGTTGTGTTGTTCCTCACTCTGGTGAGCAACACCCTCATCATCCTGCTGTCTGTGCGGGACCCAAGGCTCCACTCCTCGATGTACTTTTTCCTCTCCAACCTGTCCTTCTTGGACCTGCGCTTCACCACAAGCTCCGTCCCCCAGCTGCTGGTCAACCTCTGCAGCCCA---AAGACCACCAGCTTCCTTGGCTGCTCTGTTCAGCTCTTCATCTTTCTGTTCCTGGGGACCACAGAGTGCATCCACCTGAACATGATGGCCTTTGACCTCTACATGGCCATATGCCAGCCTCTGCACTATACCATCATCATGCCCCCGTTGCCTGTGCCGGCAGCTGGCGTCCATGGCCTGGGCCATCAGTCTGCTGGAGTCGGTGGTCCAGACACCACCCACTCTCCACCTGCCCTTGTGTCCCCACCAGCAGGGGGATGAGTTCGTGTGTGAGGTCCCAGCT-TAATCAGACTGTCTGGTGGGGACACCACCTACAACCAGATCCAGATGGCTGTCACCAGCATCCTCATCCTGCTCATGCCCATCGGCCTCATCCTGGTCTCTTACTGTGCCATTGCCCAGGCAGTGCTGAGGATTAACTCAGCCAACCGGTGGAGGAAAGCATGTGGGACCTGCTTCTCCCCTCTCGTGGTGGTCACCCTCTTCTACAGATCAGCCATCGCTGTCTACCTCCAGCCCCAGAATGCCTATGCCCA-GAAAGGGGCATAGTTCTTCTGTCTGTTCTGTGCCGTGGGCACTGCAGCAATGAA--CCCTCATTTACACCCTGAAAACCAAGGAGGTAAAGAGGGCTGTCAGAAGGTCGCTGGGGAAAGACAGGGATACATGGGAGAGCTGA a score=7067 s hg19.chr6_ssto_hap7 531985 227 + 4928567 tcctttctttcttcctct-----ctctctCCCCACCC-CATGAACCTTGACTAACTAACAAACCTCAAGGCTTGCAAAAATCATTCTCAAAAAATACTTTTCTGATGA----------TTATTGACATGAAAGGGGCATGAAAGCAGGTATAAGCCCCCAACTGAGATTTT--------AAAATAGAAAGCTGTTGCCTTAGCCAAAACAAGGTAACGAGGATGTGTACTCCACTTCCTCTATCCTGTAAA s canFam2.chrX 41296448 239 + 126883977 TCCTTTCTTTCTTTTGCTATCTATTCTTTCCCCTCCCGCATGAACTTTGATTAATGGATAAGCCACAAGGCTTATAAAAACAATTCTCAGAAAGTACTGTTCTGATGGTATGCAGCTCTGATTGA---GAGAAGAGCACAAAAACAAGAACAACCCCCTAACTGTGAGTTTCTCTTCAGGTAAAAAAAAACCATCACCTAAGCC----CAAAGT-GCAAAGACACGTATCTAACTT----TTCCCTATAAA a score=1682 s hg19.chr6_ssto_hap7 532212 89 + 4928567 AACTCTGATCTGACTTCA-------------------------GTAAGGAGATCTCAATGCTCATCACCTGAATAAAGTCTTTAGCCTTTGAGTCAC----ATCATTTTCATTTGACA s canFam2.chrX 41296929 115 + 126883977 AACCCTAATCCTGCTTCAATGCGAGGTGGAGTGGGTGGGGTGGGTGGGGGTTACCTGATGCCCATCAGCTGAATGCAGCCTCTA---CTTCAGTTACTTAAATAATTTTCTTTGGATA a score=2487 s hg19.chr6_ssto_hap7 532727 367 + 4928567 CAGATCTCTCTGGCTTAACATGGGAGATGGCGGTAAGTGCAGCTATATCTGAATTTTTTTAATAGTTAAAAGCTGACTTTATCCAAATAGGGATTAATGTATTTTCCATAAGAAGTTCTGTTCTAGGTAGAAAAAAAGTGAAGATTTTGGTTAGGTTAAACTGATTTTTAAAGTATAGGAAGAGTTACAGATTTTTTTCTTATTGAGTCTAGTCTTGAGAACAATTTATCAAGAACTCCAAATTTAAAGGCAATTAGTTAATTAAAAACTTGAAAGATCTAACTCTTTGAGTTTAAACT--GGACTCATTAGAAAACAAATGGAAGAAAAAGGTATCTAAATGTTCATAATGACTTG------TGTCTGACATTA s canFam2.chr4 37029420 327 - 91483860 CAGATCCCCACCAATAACTGTGAGATATAATGGTATTTCCAGTCATA---GATTTCTATTAA------AAATACAATTTTAAGCAAATAAAAACAAAAG-ACTGCCCATTGGAGTTTCTGCCCTTA--CGGAGAAAAGACAATATTTTTAGAAGCTTAGCCTA---TTCAGAG------AGAATTTGGAGGTTTCAATCTTTTTTAATGCAA-------AACA--TGATCATCAATATGAAAACTGGTGACCATTAATAAAT----ACCCAGAAATATCCAATTCTTT--------ACTTGGGGCTCA------AAGAGAGACTATGAAGAGATATCCAAGCATTTAGAACAAGTTGAGCTGATGACTGATATTA a score=1121 s hg19.chr6_ssto_hap7 533101 25 + 4928567 GATTCAGTCACTAGAAGATATGTCA s canFam2.chr4 37029954 25 - 91483860 GACTTAGTCTTTAAAAAATGCATCA a score=4703 s hg19.chr6_ssto_hap7 533126 362 + 4928567 AAGTCCATCAGTAC-----------CAAATGGATAAAGCCAAAATAACTTTAAAACTATATCACATGAATGAAGACTTGCCATAGCAATAAAGTAGAGTTTGGATGAAGACGTCCATCTTCGGGAAAACCCAAAATAGCTTTTACAAAAAACTGAAGG----------------ATGAAATAAAAG----------------ATTAAGCCAACAGAAATAAACATATTGAAA-ATATCTCAATAAACAGAAATAACTTAGAGTGAGTCAGAACTGAGAACACCT-------AGAACAAGTTCCAAAGAACAAGAAAAGTCAGAGCAAATCTCTGACACTTGGAGAAGATAAAACAGATGCAGGTATGTTAGAG-TGGATGTAATAAACAAATCAGAACATGTATATTACTTAGA s canFam2.chr4 37030115 403 - 91483860 AAATGTATCAGAACAAATTCAGTTTCAAGTAGCTGCCACCAAAACAATCTTAAAAGTACAACAGCTAATGAACAACTCAAGGTGGCAATAAAGCATGGATTGGAAGAAAATGCCTACCTGCAGGAAAGCATAAATCTGCTTCTAAAAGAAGCTAGATGGTTCCTGAGGCCCCACACGCAATAAAGGGGTTTCCTCCAAAaaaataaaataaataaaataaaataaaataaaataaaataaaataaaataaaataaGCTAGATGGAAAGAAAGAGCAAAAAACTTAATAAAAAGAAAAACTTCCCAAAGATAGGAGA--------TAGGGCTGCAGTTCTTAAACAAAAGAGCATTGAT---GAGATCTTGGAACTGGACATAATGAATGCATCAGACAATGGAGATTTCACAGA a score=3401 s hg19.chr6_ssto_hap7 533614 85 + 4928567 CAAGAATCTTTGGA-CCAGAAAATGCACAGTATGAAAATTAGCTTCAAAATCTCCAGGACAGAGATTAAGTAATTACTGATATATA s canFam2.chr8 20454368 86 + 77315194 CAAGCATCTTTGCAGTCAGAAAATACACAATTTGAAAGCGAGACTCAAAAGCTTCAGCAGAAACTTAAAGTAATGACTGAATTGTA a score=1107 s hg19.chr6_ssto_hap7 533699 38 + 4928567 TCAAGAAAATGAAATAAAACTTCAGATCATTTACATAT s canFam2.chr4 37033330 38 - 91483860 TTAAGATACTGTTTTATTACTGTAGATTATTTAAACAT a score=2217 s hg19.chr6_ssto_hap7 533741 70 + 4928567 ACATCTT-AAAGTAGAAGAAGATAACCTTCCTCATTGATTCTACCTTCAAATAGACCTGCTTATTATTATT s canFam2.chr8 20488204 71 + 77315194 ACATCCTGAAAGTAGAAGTGAGTTCCCATCAGGGTTGATACCACCTTCAAATGAACCTACTACTGAACATC a score=9044 s hg19.chr6_ssto_hap7 533945 438 + 4928567 CTGAACCTACTTTTAACATCCAGGAAAAATAGCCATATCATTGTTGTC----CTAAAGTAATTAAAAATTCTCTCTA--TTCTAGTTTCG----TTGCTGTTA----AATTGTTATACAGGAGTTCAAATTGAAGCTTAATAGAATTAAAACTCTTAGGATGGTGTTTTCTAAATATATATTACTTAAATGTTGGGGAA------GAG-AAATAATTTTAATTTC---------TAGATAGTACATGTACAATATTCTGTT------------TTTTAAATAAGTTATACTGGGAGATTTATAAAGGCAGTTGAACAATCAAAGACATTTGGAACT---AA----ATTTCTGTATATCAAGTGCTGTATTTACTATAGTTAAAACACAAGTATGAAAACAATGGAATGTTTATATACAAATGACTTTTATAAATGACTATTTCAATTGATTTAAGAAGTCAT------TTGATGAAAATGATAAAATAGTTAG s canFam2.chr8 20488275 462 + 77315194 CAGAACC--------ACA-ACAAGAAACTTGACAATATTTTTGATCTCTCTTCGAAAGTAATTTTGACTTCTCTCTCATTTTCAGTTTAAGTAACTGCTGTTACTTAAGTAATTCTACTTTCGCTCAAATTGAAGCTTAATGGAATTATAATTCTCAGGATAGTATTTTGTAAATAAAGATGATTTAAATAT----GAATCTTACGAGTAAATTATTTCCATTTTATTTTATTGTAGATAGTATAATTATTTTAATTTGATTAACAAATCCACTATCACATAAATAACAATGGGAGTTTTATATATGTAATCTTGCAGTTGGGGATGTTTTAAACTCCGAAGGCTGTGTCTTTTTGCCAAGAGCTGTATCTACTATGGTTGTAG-ACAAATGTGAAAGTAAC------TTTATGCataattaa-----ataa------attttaattGACTTAAAGACTTGTTTGGTATTGATGATAATAATAAATCAGCTAG a score=762 s hg19.chr6_ssto_hap7 537473 434 + 4928567 AAGAAGGGCTCTATACTTTTCTCTGAGTTG-----ATCCA-AAACAATG-------ACTATTATATAATAAACAAGACCTTGTATACCAAAATTGTGTTTGAGGGCTTATATGTCTTTTTTTAATGAATAAATAAAAGGTGGAAACggaaggaagggaaggaaaaaa-------gcaagaaaggaaggaaggCTAAAGAAAAGCACAGGAAGCCGGGGAGAGCGAGAAACAGAAATGATGTGACTCATGGAGATCTAAAAGGCATGGGGGAATATTGCCTTACATGGGCTCAAAAGAAGTCTGGAAAGAGATTGGAGAGGATAGAAAGC---TCTGAGGCCAAGTGAAATACAG----TAATGCA-GATGGAGAAGATT-------ACATCTCTTCCTTTACAGACTGGCAA---AGTTCTTGAGTGAAAAATTATACAAG-----ATGACCTTTAAAGTTGC-------TTTGTGAA---AAAAGT s canFam2.chr11 13708348 448 - 77416458 agaaaAATCTATATAATTTTCTGTATATTGTACAGATCTACAAACTATGTAGTGATATTATTAAGTGATA---------TTGCATAACAAAAACAA-----------CAGATATCCAACTTCAGACACTgagaaaagagagaagagagaaggaagaagtggaaagcatatatatggaagagagagaagaggg-----gaaatgaaaaaagataagggaagagagagagacagag--gaATTGATTTAGAGAGATTGAG-------GTTGAGAGATTGATTCATCTTGA-TGAACAGCA-TCATGACCTTCATGGGAGCAATTAGCAAACCTGTTTAGGGCTG---GAAACCCAGCAGATAAGGCACTATTTAGAAGATTTACATGAACATTTTATGCTGAAAAGAATGGGAGTCCAATATTTGGCTTTGCAAACATACAAGTTATCATGACAGTAGGTTTTGCAGACTCATCTTTGAATACAAAAGA a score=27844 s hg19.chr6_ssto_hap7 537965 892 + 4928567 AGTGCTCCTTTCACGTCATTATTCCTCAGTGTGTAGATGAGAGGATTGAGGGTCGGGGTCACAACTGTATAGAAGAGGGAGATGAACTTCCCATGAGCATGGGCATAAGAACTGTTGG-----ACTGGATGTAGACAGCTGT-GATGGTC---CCACAGAAGAGGGACACTACTATCAAATGGGATCCACATGTCCCCAGGCCTTTGCACCAGGCCTGGACTGACTTGATCCTTATGACCACCTTGGCTATATGTCCATAGGACAGCAGTATTAGCACTAAGGGCAAGAGGAGCAAGACCAGTGAAG-CAACAAAGAGCTGAACCTCATTATCATGGATGTCCACACATGCAAGCTTAATCATGGAGGGTACCTCACGAAGAAATGTTGG--AGCAATCGGTGTCCACAGCGAGGAAGCCAGAGGGTGACAGTGCCCTGGATAAGAGTGTTTCCCACTCCACTCAGCCACGCAACCCCTGCCAGAGCCTGGCACAGCTGAGGGTTCATTACGGCGGTATAGTGGAGAGGTTTGCAAACTGCAGCATAGCGATCAAAAGCCATTACAGCCAGGAGGACACACTCAGTGGAGCCCAATGCCAGGGAGATGTAGAGCTGGATGACACAACCCAGGAATGTGATTGTTTTGTCAGGTCCTTTTAGGTTCCACAGCAGCTGGGGGACAATACTGGTGGTAAAACAGATATCAACTAAGGAGAGGTGAGT-AAGAAAAAATACATGGGTGTCTTGAGTTTAGGGTCTACAGAGCAGATCAGAATAATTACTGTATTTCCCACAAGGGTAAGGAGATAGGATATCAAAACAGCCACAAAGAGGATCTTTTCCAGGTGGGGCTGATGAGAGAAACCCACCAGGATGAAGTCTCCCTTGACACTGCTGTTGGTC s canFam2.chr6 40886344 894 + 80642250 AGTGCTCCCTTTACTTCCCTATTTCTCAGAGTGTAGATGAGAGGGTTCACCGTTGGTGTGACCACAGAGTAGAAGAGGGAAATGAATTTGCCCTGGTCCTGG---------TTGCTGGTCTTAGCTGGAAGGAGATACCCATAGATAGCTGAGCCATAGAAGAGCAACACCACCACCAGATGTGAGAGGCACGTATTAAAGGCCTTTCTCTGTCCCTCTACTGAGTGGATCTTCAGCACTGCCTGAGCTATGTAGCAGTAGGAGATCAGGATGA-CACTTAGTGGGACAGCAGTGAAGAAGGTGCAGACACCATTGAGCACAACCTCATTGAGACTCGTGTCTCCACAGGCCAGTTTGATCATGGCAGGTACCTCACACAGGAA-GTTGTCCACCCTCCGGTGCCCACATAAGGGGAGCTGCAGAGTGAAGGTTGACTGGATCACAGAGTTGCTCAAGCCACCCAGCCATGCAATGGCAGCCAGCAGCCAGCAGAGCCGAGGGTTCATGATGGTGGTGTAGTGCAGGGGCCGGCAAACTGCCACATAGCGGTCAAACGCCATCACCACAAGCAGGATACACTCAGTGGCCCCTAGCCAGAGGAAAACATAGAGCTGGGTCACACAGCCACCATAGCTTATGGTCTTATCTGGTCCCCATAAGTTGATCAGCATTTGGGGGACTGAGCTAGTAGTAAAAGCAAGGTCCAGGGTGGAGAGGTTGCTGAGGAAGAAGTACATGGGAGTATGGAGCCGGGCATCCAGCCAGGAAAGCAGGATAATGGTTGAGTTCCCAAGCAGAGTCAGTAAGTAAGAGAAGAGAATGACCATGAAAAAGATTATCTCCAGCTGGGGATGGTCAGATATACCCATCAGAATGAAGCCCTCCAGGAAGCTGTCGTTGGCC a score=3658 s hg19.chr6_ssto_hap7 569457 101 + 4928567 TCAGCTCTGCACCAAAGAATTCAGATGCCACAGAGCATTTTAAGACCACTGATGCCCTCCTCACTGATCCATTTCTTAATGCTATAGGGAAGAAAATGTCT s canFam2.chrX 79011410 101 + 126883977 TCACCTGTGGCTTACACAACTCAGCCACTTCAGAACACTTCAAAGATAAAGATGCACTCCTCACCAATATGTTTCTCAATGCTGTGGGGAAAGAAGTCCCT a score=7929 s hg19.chr6_ssto_hap7 570533 160 + 4928567 TCTTAAAATAGGTAGAGATGGCAGGAGTATTTGGAATCTAAACAAAAATGTTTTAATCTTAATAGGAACAGATGAATGGTGAATTATAGCCAAAACTCATAGTTAACACA-TGaattaatgaatttttgttatagtataatagtttaattatatttaaaat s canFam2.chr7 10396688 157 - 83999179 TTTTAAAATACATGGGGATGACAGGAGTTTTGGGGATCTACACAAAAATGATTTAATCTTCATAGGAACAGAT---TGGTGAGTCATAATGAAAATTTATAGTTAGCACATTGAATTTATGCAATTTT-TTGTGTCATGATAGCttaaaaatatttaatat a score=13045 s hg19.chr6_ssto_hap7 571325 347 + 4928567 TAGTGACCTATTGTGTCTCCAGAACCTTTTTCTTTTCCAATAAGCCTTTTCATGGCCCACTTGAACTCCTTATTCCTTAGTG-------GGATGGGTTCAAGGTGGGAGTAACAATGGAGTAAAATATATGGAGAAGTTTGCCCTCATCCTGAGATGGACTGTTTCCTGGCTCTATATACATATATCTAACAGTCCCATAGAAGATGGATACCACAATGAGATGGGAGAAACAGGTCCCAAATGCTTTTTGTCTTCCTGCTGCAGACTTGATCTTGAGTACAGCCACAGCAATGAAGCCATATGACACAAGAATGAGAAGAAGTGATGCAAGGAAAATGAAAACAACAACAACA s canFam2.chr35 1374573 354 - 29542582 TAGTAGCACATTGTTGCTCCTGCTCATTGTTGCCTCCCCAAAACCTTTTTCAGTGCCCCTTTTACCTCTTTATTCCTTAAGGTGTATATGAGTGGATTCAACATAGGAGTCACTAGGTTGTAGAAGAGGGTGAGAAACTTGCCTTGGTCCTGAGAGGAGCTGTTTCCTGGCTGCATGTACATATAAATGATGCTCCCATAGAATAAGGAGACCACGGTGAGGTGGGAGCTGCAGGTATTGAATGCCTTCCAGCGGCCAGCAGCAGACTTGATCTTCAGCACTGCTGCAGTGATATAGCCATAGGACAGGAGAATAAGAACGAGGGGCAGGAGGACGATGAGAATGGCAAAGGTA a score=15058 s hg19.chr6_ssto_hap7 572208 656 + 4928567 GGTAGCCCCACATGCAATTTTGACCATTGCAGATATTTCACAAAAATAGTGATCCAGGTGGTGGTCTCCGCATCGAGGAAGACTCACAGGACAGGGGGAAAGTATCATGCAATTAGTGACACCAATTAACCAGGTCATGGCCACCAGGCCTTGACAGAGTTGGGGGTTCATTATGGTCATATAGTCCAGAGGCTTGCAGACAGCATTGAATGGGTCATATGACATCACAGCCAGAAGCATACATTCAACCGTGCATAGCGTCACATTAGTGAAAAGTTGAAAAGCACAGCCACCAAAAGTGATTTTCTTGTCTTTACCCCAGGCATTGACCAACATCTGTGGGACTATATTTGTGGTGTAACAAAGATCCAAGATAGCCAGATTTCTAAGAAAGAAATATATGGGGGTTTGGAGATGTTTATCCAGTAATGGCAGCAGGATAAGGACCATATTTCCCATCAAAGAAATTGCATAGAAGAAAAAGACAACCCCAGAGATGATCATCTCCAGCTGAGGCTTCCCAGGGAACCCAAGGAGCATAAGCCAACCAAAGT---AACTATCATTGATCATTTTTGC---------------TATTTTCTGAATATCAGCTGTGAAAATTTAAAAAATA----GTCAACATTT--TGGAAGCCATAATGAATATATTTAGATATAATA s canFam2.chr35 1374950 668 - 29542582 GGCGTCCACACAAGCCATCTTAATCAGTGCTGGCATTTCACAGAGGAAGTGATTGATCCGGAGCCGGCCACATCTGGGAAGAGTCATTGTGAGTGGGGACATGACGATGGCATTGACCAGTCCGCTCCCCCAGGCCACAGCCACCAGTCGTAAACACAGCTGGGGGTGCATAATGACCAGATAGTGGAGGGGTTTGCAGACTGCAGCATAGCGGTCATAGGCCATCACAGCCAGGAGGATGCACTCAATGCTCCCCACAGAAAGGAAGGAGAAAAGCTGGACCACACAGCCAGCATAGCTGATGGTCTTGTCAGGGCCCCAGAGGTTCACCAGCATCTGTGGGATACAACTAGTACTGAAGCAGAGATCTAGAAAGGAAAGATTGGCCAGAAAGAAGTACATTGGGGTATGAAGTCGAGAGTCTAATATACACACAAGGATTATGGTTGAATTTCCCAACACAGCTACTGTATACAGAATAAAATTTACTATGAAGAGCACTAGCTCCAGCTTGGGACGATCAGAGAAGCCCACTAAAATAA---AACCATACTCTGAGCTGCCATTGG--ATTTTTCCATGGTCTTCCTTTCACATCGTCTGTATACCTG--GTAAGAATAAAATGAATACTTGATCTATATTTTATGAAAGCC--AATGAATG---TTAGAAATATTA a score=2236 s hg19.chr6_ssto_hap7 576285 273 + 4928567 AAAGAAATGCATTTAAAAACACACTTCAGAAAAAGACAGAAAGACCATTTCAATAGCCAAATAAATCACCTTTCTATGTGTCAGTTTTCTTGAAGCACTCAGAGAAAAAATGTAGAACATCTAAAACCAGGTGACATGGCAATACCTCCATGCTCATCCCCAAAATAAGTAGTAAAAACTTGGAAGGCCAAGTGGGAAAGAAAAAAGCATTATCTTAAAGATGATTA--TTGGAACTGATAAAAATATTTTTCTTTTGTGATCACAAAAATTGAG s canFam2.chr14 5301595 241 + 63938239 aaataaataaataaataaataaat-----aaataaataaataaataaaATCTTTAACAAAATAAACTAACTTTATAAGTGTCAACCTAATTAA--CACT---GGTAAATTTTCAGTTCCTTTGGATCTGAATAGTAAAACAAT--TTCCTTGTT---------------GAGTGAATGCATGGA-GCTTAGGTGGGTATTGACAAA------TTGAAAAGAGGTTTAATCTGAGATTGTTAATAAAATTTTCATTTTGTGATGAAGAAAGTTAAG a score=1254 s hg19.chr6_ssto_hap7 577009 87 + 4928567 CGGCttaattataatttttattataattttattatatttttaatGGATATTATCTTTATCTCAGGTGTAGACAATTTATTTACAAAA s canFam2.chr35 29136559 80 + 29542582 atgtatatatataatatatattatgattt-ataatat-----atatatattatatata-cacctatatatataatatatatatataa a score=28030 s hg19.chr6_ssto_hap7 577159 937 + 4928567 ATCAATGTCCTCTT---TTTTCCATGCAATCTTTTTCTTTTCCAGTTAGCCTCTTCATGGCCCCCTTGAACTCCTTATTCCTTACCGTATAAATTAATGGGTTCAAGCTGGGAGTAACAATGGAGTAAAATATACTGAGAAGTTTGCCCTCATTCTGATTTGGACTGTTTCCTGGCTGTATATACATGTATGTAACTGTCCCACAGAAGATGGATACCACAACGAGATGGGAGGAACAGGTCCCAAATGCTTTTTGTCTTCCTGCTGCAGACTTGATCTTGAGTACAGCCACAGCAATGAAACCATATGACACAAGAATAAGAAGAAGAGGAACAAGAACTATAATCAGGCACATGGCAAATGTGGTTACCTCCATGGCTGTGGTGTCCACACATGCAATCTTGAATCTTGATCATTGCAGACATTTCACACACACAAAAAAGTGGTCTAGGTGGTGGTTCCTACATCGAGGAAGACTCGTGGCATAAGGGGAAGGTATGATGC--AATTAATCACACCAACTACCCAGGAGATGACCACAAGGCCCTGGCAGAGTTGGAGGTTCATTATGGTCATATGATGCAGAGGCTTGCAGATAGCATTGAGTCGATCATATGACATCATGGACAGAAGGATGCATTCAACTGAGTACAGTGCCACATCAATGAAAAGTTGAAAGGCACACCCACCAAAGGTAATTCTTTTGTCTTTGCCCCAGATACTGACCAACATTTGTGGGACTATATTTGTGGTATAACAGAGATCCAAGATGGCCAAATTTCTAAGGAAGAAGTACATGGGGACTTGGAGATGGTCATCTAGGAAAGACAATAGGATGATGGCCATATTTCCCATGAAGGCAATAGTGTAGAAGAAAAAGACAACCCCAGAGATCATCATCTGAAGCTGAGGCTGCCCTGTGAATCCAAGGAGTATAAAACC s canFam2.chr35 29137066 925 + 29542582 ATCTGGTTCCTCTTCAATTTTGTA---GATTCATGTCAACTCTCACCAGCTTCCTCAATGCATTCTTCATGTCCTTATTCCGTAGGGTATAAATGAGAGGATTCAGACTTGGAGTGATGATCGTGTAAAAGAGGGTGAGGAACTTGCCCTGGTCTAAGGAGGCACTGTTACCTGGTTGTAGGTACATGTAGATTATAGTTCCATAGAAGATGGACACAACAGTGAGATGAGATCCACAAGTATTCATTGATTTTTTTCGGCCTGCTTTTGACTTTATTCTCAGCACAGCTTTGGCAATGTAGCCATAGGATAGAAGAATAAGGCTGAGGGGTGTAAGGACAAAGACAATGCCTAAAGCAAAAACAGACATTTCAACTGTTGTAGTGTCTATACAAGCTATTTTGACT-------ATAGCTGGCAACTCACACA-----GGAAATGGTCCAGAAGGTTGTTTCCACATCGAGGCAAATTCAGGG--TGAGTGTACACAATGCTACCGAATTGGCCAAACTAATGCTCCAGACTGTGATTATTATCTTGAGACAGAAATGTGGGTTCATGATTATCAAATAATGCAAAGGCTTACAGATAGCTGTGAAGCGATCATAGGACATAACAGCTAGGAGGAGGCATTCGGTGGAACCCAACCACATATAAATATAGAGTTGAATGACACAGCCTATATAGCTAATGGTCTTGTCAGGTCCCCACAAGTTAACCAGCATCTGAGGGATGATGCTGGTTGTGAAGCATAGATCCAGGAAAGATAAATTCCTGAGGAAAAAATACATTGGTGTATGGAGACAGGAATCCAGGAGAGATGCAATGATGATGGCTGTGTTACCCACCCATGTAATGAAGTAAAAGACAGTGACAACTCCTGATAGCACCATCTCCAGTTTGGGATAGTCAGAGAAACCAAGTAAAACAAAACC a score=3595 s hg19.chr6_ssto_hap7 578341 237 + 4928567 tatcctacataacttggatgctttttcttttttctctttgggttgaagtttggataatttcaattgacttgtatttcagttcatgaattctttcctctactgagtccagcctattgttaagcccaccaaattaattatttatttcttatattatttctggtatgtttttttttatatccaacatttccatttggttcttctgtacaatgctaatctctttgttgagatctccccttt s canFam2.chr27 18579426 186 + 48908698 cattttacttcatttgtttccttttccattcctc------------agaatggataatttcaatggccttatttttgagtttattgattctttcttcgctgtagtacatct--------------------------tttatttcagatattgt----------atttttttcagctctaaaatttttgatttgttttt---tataatttgcatgtccttactgatattctctattt a score=10292 s hg19.chr6_ssto_hap7 581131 453 + 4928567 aacaatttgtaaaaaatacttgtagggacagaaataaatagtaagtagtatttatcctcaggataggacacattccttatt-tatcagggta-tgagtatggggaactcagactgt--ctgatgtgtagctaagcttaaacctgttgtaaacttggttaaattcagttaaccactgtcttcaaCTATTTTG-----------AAGGAAGGGTGGG--CCTGAATTCTGGTGAGAGTCCAGATAAGTCTTGATGTTTTATAGTGAGGCTACCAGCCTTTTGGACTACGGGAGATTTCTCTTTGCTTTATAGTCTGGCTGCCAGCCTTTTGGGTCAGTGGGGACTTCTATTTGCTTCCCAGTCCTGTCCCTAGCTTTCTGC-CCTTTGAGGGCAC---------------TCCCAAACTTTGGAAGGACACTTCAGCACACATTATGAAAGCTTGTAGTGCATTGGAGTGAATTATCTTAGCTTTTCT s canFam2.chr1 84656287 469 + 125616256 agccattttaaaaaattaacagtagagatagacataaagaaca-------tttactctaataaaaagatacactattttttctttcaggctggtaagaagagagtact-aatttgtaatttttttgggtctaggctt-----tgttgcagctttagcttgattcaattctctactagtttcaaatATTTGGTACTTTCTCTTCAGTAAGGACTGGAATCTGAGCACTGGTGAGATCCCAGAAATCTCTT--TACTGTACAGATGAACTATCTGAGTTTTGAGCTGTGGAAGATCTCTCTTTGCTTTGTAGCCTGGCTGTTAGCTTTTTGAGTCTTTGGGGACTTTGCTTTGCTTTCTGGTTCTGTTCCTCGTGTTCTGTGTCTGTACAGGCGCAGGATAGCAGAGCTATCAGAATCTTTGGAAGGCTGCTTCAACATGC-CCAAGAAAGCTAG-AGTAACCGAGAGGCATTTCTCTCAGCTTTTTT a score=9189 s hg19.chr6_ssto_hap7 588296 128 + 4928567 TTTTAAAAAAGTAATGTTCAAGTTTATTTGGGTATGAAATTCTAATACCATCCAGAGAGAGTTCATGCTGCTTCAAAATAATTTTAAGTGTAATTCTACAAATAAAGAAACCatttatatcaataaaa s canFam2.chr15 42386878 128 - 67211953 TCCTATAAAATTAATGTTCAACTTGATTTAGGCATGAAATTCTAATACTGTCCAGAGAGGGATCATGCTGTTTCAAAATAATTTTTGGTGTAATTCTCCAAACAAAGAAACCATTTATATCAATAAAA a score=32234 s hg19.chr6_ssto_hap7 599439 949 + 4928567 AATCAAAGCTCGCTAGATGATTTTATCCTATTGGGATTTTCTGACCGTCCCTGGCTAGAGACACCCCTCT--GTAATCTTTCTGGTGGCCTACATCTTTTCCCTATTTGGAAATATCTCCATTATCCTAGTTTCCCATCTGGATCCCCAGCTTGACAGTCCCATGTACTTTTTTGTCTCTAATCTATCCTTTCTGGACCTCTGCTATACCACCAGCACTGTCCCACAGATGCTGGTCAACCTCCGGGGACCAGAAAAGACCATTAGCTATGGGGGTTGTGTTGCCCAACTCTATATATTTTTGGCCCTGGGTTCTACTGAATGCATACTTCTAGCCATCATGGCCTTTGACCGTTACGCTGCCATATGCAAGCCCCTTCACTACCCAGTCATCATGAACCATAGACGCTGTATCCACATGGCTGCTGGCACTTGGATCAGTGGCTTTGCTAACTCCCTTGTCCAGTCCACTCTCACAGTGGTGGCCCCAAGATGTGGACAGAGGGTGTTGGACCATTTCTTCTGTGAAGTTCCAGCCCTTTTGAAACTAGCCTGTATTGATATTCGTGTGAATGAAATGGAGCTCAATGTACTAGGCGCTTTGCTTCTCCTGATGCCACTCACCCTCATCCTGGGCACTTATGTGTTCATTGCTCAGGCAGTAATGAGAATCTGCTCTGCTGAAAGTCGCTGGAAGGCTTTCAATACCTGTGCCTCACATTTGCTGGTGGTCTCCCTCTTCTACTTCACAGCCATCAGTATGTATGTCCAGCCTCCCTCTAGCTATTCTCATGACCGGGGGAAGATCATGGCTCTCTTTTATGGCATTGTCACACCCACCCTCAACCCATTCATCTACACATTGAGAAACAAGGATGTGAAAGCTGCCCTGAGAAGGTCACTGACTAAAGAGTTTTGGATTAAGACAAGATGATATCTGAAAAGAAGTCCT s canFam2.chr35 1443668 951 - 29542582 AATGAAAGCATCCCACAGGAGTTCATCCTCTTAGGTTTCTCAGATCGACCATGGCTAGAGCTCCCACTCTTTGTGGTCTTCCTGGTTTCCTATATCTTGACTATCTTTGGCAATCTGACAATAATTCTTGTGTCTTATCTGGACCCCAAACTCCATACCCCTATGTACTTTTTTCTTACCAATCTGTCGCTCCTGGACCTTTGCTATACCACAAGTACAGTTCCACAGATGCTGGTAAACATATGCAGCACCAGGAAGGTGATTAGTTATGGTGGCTGTGTGGCCCAGCTCTTCATTTTCCTGGCCTTGGGTTCCACTGAATGTCTTCTCTTGGCTGTCATGTCTTTTGATAGGTTTGTAGCTATTTGTCGGCCTCTCTATTACTCAGTTATCATGCACCAAAGGCTGTGCCTCCAGCTGGCGGCTGCATCCTGGCTCAGTGGCTTTGGCAACTCAGTGTTGCAATCCACCTGGACCCTTCAGATGCCTCTCTGTGGCCATAGAGAAGTAGATCACTTCTTTTGTGAAGTCCCTGCTCTGCTCAAGTTGTCCTGTGTAGACACAACAGCAAACGAGGCTGAACTATTCTTTATCAGTGTGCTGTTCCTTCTAATACCTGTAACGTTCATCCTTATATCTTATGGTTTTATTGTCCAAGCAGTGTTGAGGATTCAGTCAGCCAAAGGCCGGCGAAAAGCGTTTGGCACCTGTGGCTCCCATCTAATTGTGGTGTCACTGTTTTATGGCACTGCTATCTACATGTATCTGCAACCACCATCACCCAACTCAAAGGACCGGGGGAAGATGGTGTCCCTCTTCTATGGAATCATCACACCCATGTTGAACCCCCTTATATACACACTAAGAAACAAAGATGTAAAGGGAGCATTTAGGAGGTTGATTCTGAAGATCTTCTTAATCAAGAAATAGGAATGCCCAAATGATAGGCCT a score=26170 s hg19.chr6_ssto_hap7 613962 756 + 4928567 AAAATAAATTACAGCAAAATCAAAAAGATCTTGGTTTAAGTGATTTTTAACCTTTTCCTACAGCTTAGGGATTAATAAATGAAACAAACTACAATATCAGATGCAGTTACTTCAAAATCAGATGCATTAACTCATGTAACTTAGCCATTAAGTTTTTGTCTATATAGAACTGAAATCAATTATGTAGATATCCCGTTAAATAAGTATTTACTTAGAACCTATATGTTAGATGCCTTTGGTCAAGGGTGAAGAAATGGACAGAAATGATGAAGGAATAGTCTTTGTGCAGAAGAAACTCAGTGAAAATGATACTGATTGACCTTTCAACAAATGCACAGATTTAAAAAGAAAAAAAAGAGGCAAAAATTAGTTAGCAGAGTGATTCTGATACACAAAATAATTCTATGATGGTGTTGATTCTATAATAATAGCACATTTAAAATGAAATAGGAAAAGTTACATCATTTAATCCTCCT-AACAATT--GTTACATCTGGTATAGA----TTTTTTTTTTGTTTGGTTGGTTATTTTAAGAAATGGGCTCCCACTATCTAATATATTTCAAGTCCTAGAAAGaaatatatatatatattttttCATTCAGGAACTCACAATGAGACACAGCACTAGAAAGATATATACTCTACTACCTAGCATTCTGCCTATCACATAG--------------ATTTTAGAAAATCTCTTTATTTCTTCAAATGGATTTGATTGAAAATGTCCAACCCCAAGTTGTCATAAGAATTTTGAGAATTAAACG s canFam2.chrUn 65144459 693 + 86547043 AAAATAAATTACAGTAAAA-CAAAAAGATTCTAGCTCA-GTGATTTTCAACTCCTTTCCATTGGTTAGGGATTAATCAACAGAATAAACTAAAGCATCTGACAGAGT---------------------AATTCAGGTACCTTAATAGTA----------CTGTATAGAATTGAAATCACTCGCGAatatatccagttaagtaaatatttacttagtgctgctatgttaggtaccattg-ccaagcatggagaaatggacag------tgaagaaaTTGCCTC-ATGGTGAAGAAACTCAGTGAAAATG-----GACTGATCTTTCAACAAATCCACAGATTTCTTAAAAAAAGAAATAGA--------AATCAGTAGAATGATTCTGACACCCAGAATGATTTTATCAT---------TCTACGTTA---TCTCATTTAACATAAAG-------ACTGACACTAGCCAACCCTCCCCAACAATTATGTTACATGTGATGTTAAAGTTTTGTTTGTTTGTTTGGTTGATTATTTTAGGAAATGGGCAC--------TAATATATTTCAAGTCCTTGAGAAAAAGA-ATAAATGTTAATTCTTATTGAAGAAGTCACACTAA-AGATAATACTGGAAAGGCATATACTCCACCATTTAGCATTCTGCCTACAACATAGTAAGAACTAAATACATTTTAGAAAACCTCATTATTTGTTCAAATGAACTTGATTAGACATATCTGAATCCAAATCATCCTAAGG-TTTTAACAATTAAAAG a score=99733 s hg19.chr6_ssto_hap7 614757 1724 + 4928567 TCCAAAGCTCAGGATTCAATGCCTGATATCAGTGGCATCTGCATTTTACAATTTTGAGAC--ATTTCATTTTTCAAAATTTCTATGAAAAGTTTATTACAATCAAATGTAATCTTTTTAAAG-TGTTAAGAGCTTTTCAAAGG-AAAAAATATGACTGTTCTTTGAGCTAACCTCTCTTCTAGATTAGCTTCTGAGCTGTTTCTAGATCTGCCTCTGAGCTGTTTCTAGATCCATTTGCAAGGTGGTATCAATAACTTCATGTTAGCTGGTTAGCAAAAGAAGCTATATAGTGCATCGTTGTAATACTAAGGCATCATATAGAAGATGTAATGAGATTGGTATGCTAGAATCATTTTCATTGACTTTATTGAAGGTAAAGACTTTATCATTTCCATCAATTTCTCCCTCTTTGACAATGCAAACTCTGCTCCAGAAAATGTTTATGACTT-----------------------GTTGATCACATTCAGGGATTCTATTTCTGAATAATTGCTAAA-ACGTTTTTGAATTGAATATTAACTAATCGCAATGAAAATAAATTCATCTC-ATTTCAATACCTCCATGCTGAGGAATTGAGTTACTTGACACACAAATATATTAGATGTCATGCATTTTCTTCCTACTGTC-TTTGGCTTCCTAAACAGAGTCACACTTGGTATCTTCAGAGAGACTATGGTCAATTTGACTTCAACGAGTGGATTCCTTCTTATGGGGTTTTCTGATGAGCGTAAGCTTCAGATTTTACATGCATTGGTATTTCTGGTGACATACCTGCTGGCCTTGACAGGCAACCTCCTCATTATCACCATCATTACCGTGGACCGTCGTCTCCATTCCCCCATGTATTACTTTTTAAAGCACCTCTCTCTTCTGGACCTCTGCTTCATCTCTGTCACAGTCCCCCAGTCCATTGCAAATTCACTTATGGGCAACGGTTACATTTCTCTTGTTCAGTGCATTCTTCAGGTTTTCTTCTTCATAGCTCTGGCCTCATCAGAAGTGGCCATTCTCACAGTGATGTCTTATGACAGGTACGCAGCAATCTGTCAACCACTTCATTATGAGACTATTATGGATCCCCGTGCCTGTAGGCATGCAGTGATAGCTGTGTGGATTGCTGGGGGCCTCTCTGGGCTCATGCATGCTGCCATTAACTTCTCCATACCTCTCTGTGGGAAGAGAGTCATTCACCAATTCTTCTGTGATGTTCCTCAGATGCTGAAACTAGCCTGTTCTTATGAATTCATTAATGAGATTGCACTGGCTGCATTCACAACGTCTGCAGCATTTATCTGTTTGATCTCCATTGTGCTCTCCTACATTCGCATCTTCTCTACAGTGCTGAGAATCCCATCAGCTGAGGGCCGGACCAAGGTCTTCTCCACCTGCCTACCACACCTATTTGTAGCCACCTTCTTTCTTTCAGCTGCAGGCTTTGAGTTTCTCAGACTGCCTTCTGATTCCTCATCGACTGTGGACCTTGTATTCTCCGTATTCTATACTGTGATACCTCCAACACTCAATCCAGTCATTTATAGCTTACGGAATGATTCCATGAAGGCAGCACTGAGGAAGATGCTGTCAAAGGAAGAGCTTCCTCAGAGAAAaatgtgcttaaaagccatgtttaaactctgaagaaccatacaaatgaaaggcattgttattatGTTTCAGATTGGAAGAGAGGTGAATCTTATTTCTTCCCAGAACGCTCTTCCAAGCTGTCTATT s canFam2.chrUn 65145181 1705 + 86547043 TCCAAACCTCGGGACTCA-------------GTGGCATCTGCATGTTACAATTTTAAAGTTGATTTCACTGTTCAAGTTTGCCCTTGGAATTTCATTCCAACCAAATTTCATTATTTTAAAAATGTTGAGAGTCTTTCAGAGGCAAGGAATATGATTGTCCTTAGAATGAACATCTCCCTTAAGT-----------------------------CTGGACTGTTCCTAGATCCATTTACAAGATGGTACCAACAACTTCATTTTAGATGGTTAATGAAGGAAATTTTAC--TACCTCATTGTAATCCTAAGGTATTGTATATAAGATGTAATAATACTAATATATCAGTGCAATCCTAAATGACTTTGTTGAGTGGAAAGACTTAATTGTCTCCATCAGTTTTTCAC-CTTTGACAATCCAAACTCTGCTCCAGAAAATTCTGATGACTTTTTTTTTTTACCTATGTGAAGCTATTGATCACATTTAGGTGTTCTATTTCTGAATAATAGGTAAAGATTTTTCTAAGTTAAATGTTACCTACTCACTATGGGGATAAATTTGTCTTGATTTCCGTACCTCTAGGCTGAGTGCACCA-TTCCTTGACATACAGATATACTAAATATGATACATTCT-TTACAACTGTTGTTTGGCTTCTTTGGCAGAGTCATACTTTCTACCTTCAGTGTGACCATGGCCAACTTGACCTCCATGAGTGGATTCCTCCTCATGGGGTTTTCTGATCATCGTGAGCTTCAGATTTTACATGCATTGCTTTTTTTGGTGACATACCTGTTGGCCTTGACAGGCAACCTCCTCATTATCACTGTAACCAGCTTGGACCATCACCTACAGTCCCCCATGTATTACTTCTTGAAGCACCTCTCTCTTCTGGACCTCTGCTTCATCTCTGTCACAGTCCCCCAGTCCATCACAAATTCACTTATGAACAATGGTTACATTTCCTATGTCCAGTGCATTCTTCAGGTGTTCTTCTTCATAGCTCTGGCCTCATCAGAAGTGGCCATCCTCACAGTGATGTCTTATGACCGCTATGTCTCCATCTGTCGGCCCCTGCAGTATGAGACCATTATGAACCCCTGCATTTGTAGGTATGCAGTGACAGCTGTGTGGCTGGCTGGGGGCCTCTCTGGGCTCATGCATACGGCTGTGAACTTCTCCATACCTCTCTGTGGGGAGAGAGTCATTCACCAATTCTTCTGTGATGTTCCTCAGATGCTGAAACTAGCTTGTTCTCATGAATTCATCAATGAGATTGCAGTGGCTGCCTTCACAACCTCAGCAGCATTCATCTGCTTGGTCTCCATCGTGCTCTCCTATGTTCATATCTTTTCTACCGTGCTGAGGATCCCATCAGCCGAGGGCCGGACCAAAGTCTTTGCCACCTGCCTACCACACCTGTTTGTAGTCACCTTCTTCCTCTCCACTGCAGGCTTTGAGTTTCTGCAGCCCCCTTCTGACTCCCAATCAGCTATGGACATCATGTTATCCATATTCTATACGGTGATACCACCAACACTCAATCCAGTTATATACAGTTTACGGAATGAAGCCATTAAGGCTGCTCTGAAGAAGGTGCTGTCAAAAGGAGAATTTGCTCAGAGAAAAATGTATTTAAAAACCATTTTTAAATTCTAAAAATCCATACAAATAAAAGGTACTCCCAATATATTTCACATTGTAAGAGGGGAG-GTCTGATTTCCT-TCAGAACTCCATTCCAACTTTTCTTTT a score=17588 s hg19.chr6_ssto_hap7 634231 328 + 4928567 GAGTTTTAAAAAAAACTGTTTTTAAAGACGTAAAGTAGAGCTATGAGCTCACCAAAGTCCACTGAAGTTCGCCAAAGAGCTGAGTTACTTCAGCTCTCATGAGACCAGTAATTTTTGCTTGACGAAGGTATTTGGCAAGAAAATAATTCCACAATAACACATTTAAAGATACCTAGAACATTGAAAAAAATTCTCAAATTAAGATAGTATAGCTTAATTCCCAAGAACTTATTTCATCTCTTTTGTTACTAATCTAGAAGGTCAGGAGTGTGG-TAAAGGCAGTGTCTGATAAGGTTATGAGCTTCCAAAGAGTTTCTACATTTTTAGT s canFam2.chr3 31695504 322 - 94715083 GAGTTTTAAAAAACA-TATCTTTAAGGATATAAAGTAGAACTATAAACTCACCAAAGTCCACTTAATTTCACCAAAACATTGACGGACTTCAGCTCCCATGAAGCCAAAAATTTT-GCTTGACAAAAGTATTTTGTCAGAAAATGATTCCACAGTAACAATTTTTAAGATACACAGAACACTGAAAAAAGT-AGCAAATTAAAATAA-ATGGCTTAATTCCCAAAAA-TCATTTCATCTTTTTG--TACTCATCTAGAAGGTCAGGAGTGTGGCTAAAGGCCATTTCTGATGAGGTTATGAGTTTCCAAAAGTGTTCTAAATCCTTAGT a score=9010 s hg19.chr6_ssto_hap7 634559 157 + 4928567 GCAGACACTCTCCCTTTGGGGGCAAAGTATGGTTTCTCCCATCCCTATTAAAAAGAAAACAG----------------------TTAAACTAAGTTATCAGAATGAGATATTTTGACTCTAACAA-TTTACACTCAAGGCTTTATGCTGAGTTGTCTTGTTCTAATC-AAGCATGAAGGTG s canFam2.chr5 73934333 181 - 91976430 GCAGACACCCTCCCTTTTGGGGCATAGTAACCTCCCTCCCACCCCTATTaaaaaaaaaaaaagaaaagaaaaaaaaaaCCCAAATGAAACCAAGTGATCAGAATGAGATGTTTTGATTCCAACAAATTTACACTCAAGGCTTTGTGTTGAGTTGTCTGGTTCTAACCCAAGCATGATGGTA a score=61167 s hg19.chr6_ssto_hap7 634716 1160 + 4928567 TCAAGCACAAAGCACGTGGCAAACGAAAGACACTCCC-GCCTCATTCTGAAAACAAATACTGATAACCAA-------CCCCACCCTCTTACCATTTCAGGCCAACCCATCTTATGATACTGGGACCAACTTGAAA-TAATTTAGAGGTATATTTAGGTTTCCCTCTCCCTTACTTCAGTAAAAGATCATTTTAGAATAACTTTATTCCTTTCCTAAGGGAAAGACAAAAAAGTTTCCATCCCGTCAGAACATACGGGGAGAGAAAAC----ACACAGGCCCAGAGGTGGGAAGGTGTGTGACAGTCCATAACCCATTACACAACGATGCAACCAAAGGCTAAACCATGAGTTGAATATAGTTTTAATATTAAAAATAGGAACTAGTTATCATCCAAATGAACCACTGGAAAAAATATTACCATTACTTTAAAAAATACATTCCAATATTGGAAATAATCTGAAAACACTTTCCAGTAGTAACAATCCTCCTTAATATGAGGG------------------ACAAAAAAAAAGACCAGGCTTTGACCAAGTCCTTAGAGCATATTTCCATTTCATGATTTATATTCAAGAACCAAGCAACAAG-CTGGACAGCTGCCTCTGTAACACTGTGTCCAATAGTGGTGTCCCAGATAGTTTAAGTGCCACTCGTCATTAGATGTTATACTTCAGCAATACTTCCAATTTTAAGTCTGTACTTTAAGAGGGACCCACAGGAACTCAGCACCAGGCAGAGCAGTGTAAGACTGGAAAAGAAGACTGAACTTTTGATTGGTCACTCACATGTTTTTTAGCGAGATACAGAATTACATTTACACTCTTTCCTTGCATTTCTTCTATA-TTAATGATCCCTCTT-----GCAGGAGGTGTAGGAGAAAGAATGCTGCGTCAGTACAAGAACAAGAC-TTTTTGGTCAAAAGTTGATACCGTTTAAATTCCCTCTCCC--AGCGCTTCATGCAAAAAAAAAAAAAGGTTACTTCCTGAATTAAGGTTTGTATTTAGTAACCAACATTGACTGGACAGAACATACGTGACTTGGATTCCAAATAAATGAGATTGCTCTTTTTTGGGTTTGTACTGTGCAGCTCTTGCCACAG--TTGTTGAAGAGTTAGGGCTGTGTCTGATCAGGAGGCATCTGTAGGATTTTGATCTCCAAGGAATTGTGGGTGAGTCACATA s canFam2.chr3 31695897 1139 - 94715083 TCAAACACAAAGCACACAGCAAAGGAAAGATGCTCTCTATCTCATTCTGAAAACAAATACTGATAACCAATTCCTCCCCCCGCCCCCTAGCCATTG-GGGCCCACCCATATTATGATGCTGGGGCCAACGTGAAAATAATTGAGAAATAGATTTAGATTTGCTTCTCCCTTA---------------------GA------TTATTCTGTTCCCAAGGGAAAGACAAGAAAGTTTCT---CCGTTGGAATGTATGGGAAGAGAAAAACAAAACACAGGCCCAGAGGCAGCAAGGTGTGTAACAGTCCATAACCCATTACACAAC--TACAACCACAGGCAAAACCGCGAGTTGGACataatttaaatattaaaaataGGGAAAAGTT-TCATCCAAATGAATCACCGGAAAAAATATTACCATTACTG-AAAACAGACAC-CCAATAGTGGAAAGAAGACAAAAACAATTTC---TAATAACAATGCTTCTTATAGTGAGGGGGGACTTAAAAAAAAGAAAAAAAAAAAAAGACTAGGCCTTGACCTAGTCCTTAGAGCATCTTTCCATTTAATAATTCCTATTCAAGAGTCCAGCACCAAAACTGGACAGCTGCCTCTACAGAACTGTGTCCAATAGTGGTGTCCCAGATAGTTTAAGTGCCACTCCTCACCAGAGGCTATACTTCAGTAATACTTTCAATT--AAGTCTGTGCTTTAAGAGGGACCCACAGGCATGTGGCACCGGGCA---CAGTCTGAGGATAGCAAACGAGACTGCGCTGTT--TTTGTCACCTACAC--TCTCTAGCGAGATATCAAATTGCATTTACAAGCCTTTCTTGCTTTTCTTCTATAATGAATGATCCCTCTTATCTCGCCAGAGGTGGGGAAGAAAGA--GCTGCATCAGTACAAGGGCAAGATATTTTTGGTCAAAAGTTGATGCCTTCTAAATTCCCTCCCCCCCACCCCTCCCTGGAAAAGA--------GTTATTTTCTTAATTAGGGCTTGTATTTAGTAACCAACATTGGCTGGATAGAACATA----GCTTGGATACTAAATAAATGAGCTTATTCTTTTT-GGGTTTGTACTGTGCAGCTCTTGCTACAGATTTTTTAAGGAGTTAGGGCTATGTCTGATCAGGAGGCATCTGTAGGATTTTGATC-CTAAGGAGTTTTGGGTGAGTCACAAA a score=75330 s hg19.chr6_ssto_hap7 636038 1294 + 4928567 TAGAAGTGGGCA-GAGTCAAAAAA-----GCAACTTCAAATAATTAATCCCTTTGTCCATATGAGTTAAATACAAACGTGTAT--------------ATTTTAGGTTTTTAAAAATCAATGCAATATGGGAATCaa-ttttttaaaaattattttttgattttttttCTCC---TCCCAGATGCCTTCTGATTGACCTAGTACACTGGGTTAAAAGGGAATTCAAAAACATTAAAAAAAA-----GTTCACTGGTTTTGATTCATCTCAGTCTTTTGGCCTGGAGATTAGGCCAAACATCAAGCATGTTGGGAGGGCAACAATTTAAAGCAACATTATTGACTGTAAAGCATTTGCCAGGAATTTACAGTACAAAATGACAGATAACAATTATTGTCATAACACAAGAGAATGGCAAGCAGCTTTGTGTGGTATGAAAGTTAAACAGTTCTCAGGGGTTGTCCATTCCTGCAAAAGTTTATGTATCAAGGTGGGCAGAAGGCAATACATTTACACACTACAGA---TGATCCATAGAAAATTAAGCTCCAGAACTGCTAACATCACCAAAGCTGGTACTGGCTAATACTATGAAATGCGAA-TCTGTGCTTTATGCATGTACTGCTCAACAATACTACCACTCAACAGAATCCCCACACTGCAAGGTAGATGCATGGTAGATTAATCTTTTCCCTCTTTTGGAGAGCTTGAAAAATTCCTTAAACTTTT----AGAAAGGGTGAAGAAGCAAAAT--AAAAGAGCTTCTCAAAAAAAAAAAATCTTGAATTATCAATTTTTGACGCTTCGTTGCTCTCTCTGGTAAGCCTCCTCCAGGGGTACTAGATGAGACAGTGTGGGAGCAAACAGGACATCCCAGATTTCTGTGTCCCTTTCCTAACCAAGGGT-ACCATAGAAACCTGCTCTCTACAGCAA-GAGGCCAAAGTGCTTTCTAGAATTTAGTGCTG-AGTAAACTGAGCCCCT-TCATCTTTAGCTGCTCCCATAATCACTCTAATCCCCTTAATCCCATCAACCTTTATC----------ATATATATGTATATATAC---ATATACACTTATTTACAAGGTTGATAAAAGTATACACACTCAATTTTCAACGCAACACACTCTGCCACAAAAGAAATAGGGTCAAGGTTCTGACATGTCTACAAGTCAAGTGCCATA-TTGTTACTGGAGACGTATGTAAACCAGTCTTTAGTGTT-TGCTATAGAGCACAAAGGCTTGTCATAAGGCTCCTCCAATGATAGACTGCT-TTTCCTTTGGGAGCATTGATGTTTTA-TCTACTCAGACCAGAATAAATTTTTACTTGGAATTATTATTA s canFam2.chr3 31697047 1327 - 94715083 TAGAACTATGCAAGAGTCAAAAAAAAAAAGCAACTTTGAATAATTGATTTTTTTAGCCAC--GAATTAAGCACGAAAGCATATGCAGGACTTGTAATATTTTAGGGTTTCGAAAA--AATGGAATATAGGAAACAAATTTTTTTCATTTTATTTTTTGCTTTTTTTTTTTTAAACCCTAGATGCCTCCTGATTGACCTAGTACACTGGGTTAAAAGGGAATT-AAAAACATTAAAAAAAAAAAAAGTTCACTGGTTTTGATTCATCTCACTCCTTTTGCCTGGAGATCAGGCCAAACATCAAGCATGTTGGGAGGGGCACAATTTAAAGCAACACTATTGACTGTAAAGCATTTGCCAGCAATTTACAATGCAAAATGACAGATAA---TTCTTGTCACAAAGCAAGAGGATGGCAAGCAGCTTTCTTTAGCATGAAAGTTAA-CAGCTCTCAGGAGTTGCCCATTCCTGCAA--GTTTATGTATCAAGGTGGGCAGAGGGCAACACACTTACACAGTACAGGAAGTGATCCACAGAAAGT-AAGCTCCAGAACTGCTAACATTACCAAAGCTGGTACTGGCTAATGTTCTGAAATGCAAAATCCATGCTTCGTACATATACTGCTCAG--ACACTGCCACACAACTGAATTTCCACACTGCAAGGGAGAT-----------TAATCTTTGTCCCCTTTTGCTGAGCTTGAAAAGTTCCTCAAACTTTCTTTAAAAGGGGAGGGAGAAGCAAAATCAGAGAGAGCTTCTCAAAAATAACA--TCTTGAGTTATAGGTTTCTGAAGTTTCTTTGCTCTCTCTGGCAGGTGTTCTCCAAAGGTATTAGATGATACAGTGTGGCAGCAAACAATAAATCCCAGACTTCCAGGTCCCTCTTCCAACACAGGGTCACCACAGAGGTCTGCTCTCTCTACTAAAGAGGCCAAAGTACTTTTTAGAATTTAGTGTTGCGGAAAACTGAGCCCCTCTCATCTTTAGCTGCTCCCATAATCATTCTAATCCCCTTAATCCCAGCAACCTTCATCCAAAAAAAAGATATATATATATATATCCCAGAAAAAAACTTATTTACAAAGTTTATACAAGTATACACACCCAATTTTCTATGGGACACGCTTTGCCACAGAGGAAAGAGGGTCAAGGCTCTGACATGTCTACACATCAAGTGCCATAACTGCTAATGGAAGCGTATGTAAACCAGTCTTTAGTGTTCTGCTATAGAGCACAAAGGCTTGTCATATGGCTCCTGCAATGATAGACTGCTCTTTCCTTTGGGAGCGATGATGTTGTAATCTACTCAGCCCGGAAGATATTTTTACTTGGGATTGtgtttt a score=177564 s hg19.chr6_ssto_hap7 637616 2516 + 4928567 TGTTGGGATTTTTTTAATACATGTGTTTACAGTGTGGATGAACTGCAGCTGCATATCAACTCCTCCAATATAAAGAAAAAGAAAATGGTATTTAAC-TGACTAATAAGTTTCATCTACCAGCTCTGGGCTTCAGTATTGGGTAGAAAG--AAAACAGAGACTTCACCCTAAAACCAAAATTAAAAGACAAAAATTTTTTAAAGAATA--AAGGAAAGAAAG------------AGTACTACTGTTGATTCTTTGGTCTGTGTCTAAAAGATGATATTCTGAA-TATCTCAGAGCATACAGCACTTCACACAAATGAGTAATAAGCTCCTCAGGCTTAAAAAA-AAATGGATGACTAGGGAGAAGTTGAAATGTCCTCGAGAGTCAGATGTTGGAGAATTTTGAAATAATAGACAAGCTTTTGTGTTCATTAAGATTCTTCTCTTTTTAGGGTTTCTCCCCTTCT-----TTCTTTTCCTTTCCTGTCCCCTTTCCCCAGAAAACATTTTTTTAAAACCAGCAGTTAGTGCAACTAATGTTCACTTAGCATACAGTGCAAACAGATGGAACAAAAAAAAAGGAATATTCCTTCTTTTCAGCTTTTTTCTCTTCACCAGTTAAAAAAGGAAAAAAAAAATTCTGAACTCTTTTAAGTCTTCATAGTTCTGAAATAAAAGA---TGAAAAACTCACAAAGAGAAGAGCACTCCTCTCTAAAAAATGGTATGTCATAGATCCAAACAAGGCTTCCACAGTTTGTCAAAGAGTGCTTATTAAGGCTTCTCATTTTCTACAGCCTTGCTGTGGAATTCTGCCACATGCAGGCTCTTGTCAATGTTGCTTGGAATAGGTTTTATTTCTTTTCCCAGCTGCTCCTCAATACCTTTCAGGTTGAAGTGATCGCCATATGTGATCAAGTTGATGGCTAAGCCAAAATGGCCAAAGTGACCTGGTCTTCCAATATGACGGAGATAGGTCTCTTCTAGCTTTGAAAAGTCAAAGTTTATTACCACATTCACAGCTTGTATATCAATACCTCAAGTAAACAGATCAGTGCAAATGAGA-------ATAAGCCATTTCAGAAATAATAAAATACACAATTTTGATGTTCCTGCCTCATTTTAGCATGAATGTAGAAACAAAAATAACCCAGTTGAGAAATTTTGGCTGGCCATTCAACTCGCTGAGAGCAGTTAAAGAAAATGATCATCTGGTTTAGCTGAAGCCTGGAGAAAAGTGTGGTGAGGCCGTGTACTTTTTGGTGCTCAGTTACATATGCGTAGTACTGGGTTATGTCCTTCAGAGTTAGTTTTTCCATCAGGTTAGTCTCA--GGGTTTCTGCAAATGGGAATTCATGAACTTCTGTATACTAAGAGGGAAAGTAGCAGAATGTAGTAAAATCTGCCTGTCTTCAGGTAGCATGAGAATAATATCTTCCATTAACTGCCCAAAATCCTGGGACAGAAACTTATCTGCCTCATCCAATACTATCACCTGGACATGACTGACCTTTGCTACTCCTTTCTTAATAAGATTCAGGATTCTCCCAGGGGCAGCAATCACCATGTGCACTGTATCATCCAGCCTCAGTACGTCATCTCCTGAATTGGTTCCTCCTGTGGTCATCACCACTTTGACTCCTCCCATGTGTTTGCTGACCTGGATGCAAATTTGACTGATCTGTAGAGCAGGTCCTCCTGTGGGAACAATCACTATTGTTTGTATAGTGTCCTTCTTCAGGTCTAGCCTTTTAAGTAGGGGAATGTCATGGGCACTGCTCTTGCCTGTTCCATTTTTTGCTCTAGCTAAGATATCCCTACCAGATAAAGCAATGGGAATGCTCTCTTCTTGGAAAGGAGATGGCTTTTTCCATCCCATTTCAAAAATTCTCATCAGTAACTGCCGTTTCAAACAGTAATCTTCAAATTAATATCCTCTTGTAGAGGTCACATCCAACATTTTGATTCTTAGATCCTTTGGAAGGAGTTTTAAAGTCTTCTTCCAATTATCACCAGGCTTAATAGTGGTGGTCATACTCTGCGCTTGTGGTTGAGTGCTATT----ATTGTGTTGGTGTTTTTCAGCTGGTTCGTCTGTTGCTGTGTCTGTGTGGCCTC-TCCTCTAGGGCCACCACTGGGTTTCAGGGGACCCCTCAGCTGACCATTTTGACTGGACAGACCCATTATAACAGCTTTCTCTGTTCTGGTTGTGCTCATGCTGTGTTAATTGCAAAGGTG--TCTTTCAAACTTCAAAACGTTTGAAAGTCAATAGAGAAACTGTAATAATAGTTTATTAGGCTGTCCAAAGTGAAGAGATAAATATAGGTCTTGCTCAATAATTAAGTTCTTTTATTATAATGCAGGCAAGCACCCATAAGTCTCTGAATGGTAAGCAGCAGTAACTTGCTTTCTTGTACTGTATCAAC-TTTTAATTTTTAAAAGGCCCTCTTACCAGCTTCAAT--TATAGCTGAATTCACTTACTTCAATCACTGAGGCCACTCCTGTGCTGGACACTCTTGGTCCTTTATTGTTGACTGGAAACTCCCAAAAT s canFam2.chr3 31698388 2542 - 94715083 tgttttgttttTTTAAATACATGTATTTACAGTGCGGATGAACTGCAGTTGCATATCAACTCCTCCA-CATAAAGAAAAAGAGAATGGTGTTTAACATTACTAATACGTGTCATCTTCCAGCCCTGGGCTTGAGTATCGGGTATAAAGGGAAGAGAGAGACTCCAACTTGAAATCAAAATGAAAAGACAAAAATTTTAAAAAAGATAGGAAGGAAAAAAAATTAAAAAAGGAAAGAACTATTGTTGATTTCTTGGGCTGCGTCTAAAAGATGATATTCTGAAAGGTCTCATAGCATAAGGCACTTCGCACAAATAAGTAATAAGCTCTTCAGGCTTAAAAAACGGATGAGTAATTAGGGAGAAGTTGAAATGCACTCAAGAGTCAGCTGTTGGAGAATTCTGAAATTGTAGACAAGCTTGTGTGTTCATCAAGATTCTTCTCTTTTTAGGGTTTCTCCCCTTCTCTTCTTTCTCCTCCTTCCTTGTCCCCCTTCCCCAGAAAACATTTTTTTAAAACCAGCAGTTAGTGCAACTAATGTTCAGTCAGCACACAGTGCAAACAAGTGGAACAAAAAA---GGTAAATTCCTTCTTTTCAGCTTTTT-CTCTTCACCAGTTAAAAAAA-AGAAAAAAATGTCTGAGCTCTTTTAAGTCTTCATAGTTCCAAAATAAAAGAAGATGAAAAAGCCACAAAGAGAAGAGCATCCCCCCC----AAACGATGTGTCACAGATCCAAACGAGCCCTCTGTAGTTTGTGAAAGCATGCTTGTTAGGGCTTCTCGTCCTCCACGGGCTCGCTGTGGTATTCTGCCTCATACAGGCTCTTGTCGATGTTGCTTGGGATCGGTTTAATTTCTGTTCCCAGCTGCTCCTCAATATTTTTCAGGTTGAAGCGATCATCATATGTGATCAAGTTGATGGCTAAGCCAAGATGACCAAAGCGACCTGATCTTCCAATACGATGGAGATAGGTCTCTGCCAGCTTTGGGAAGTCAAAGTTTATTACCACATTCACAGCTTGTATATCAATACCTCGGGGAAACAAATCAGTGCAAACAAGATTGCGGCATAAGCCATTTCGGAAATCATGAAATACACGATTTCGATGTTCCTGCCTCATTTTAGCATGGATATAGAAGCAAGAATAACCCAGTAGAGAAATCTTGGCTAGCAATTCAACTCGCTGAGAGGAGTTACAGAAAATGATCGACTGGTTTATCTGAAGCCTGGAAAAAAGTGTGTTGAGGCAGAGTACTTTTTGGCGCTCAGTTACATAGGCGTAGTACTGGGTTACTCCCTTCAAAGTTAGTTCCTCCATCAGGTTAATCTCACAGGGTTTCCGCAAATGGGAATTCATGAACTTCTGTACACTAAGAGGGAAAGTAGCAGAATATAATAAAATCTGTCTGTTTTTAGGTAGCGTGAGAATAATATCCTCCATTATCTGCACAAAATCCTGTGACAGCAACTTATCTGCCTCATCCAATACTATCATCTGGACATGATCAACTTTTGCTGCTCCTTTCTTGATAACATCCAGGATTCTTCCAGGGGTAGCTATCACCACGTGCACTGTGTCATCAAGCCTCATTATGTCATCCCGTAAATTGGTTCCTCCTGTGGTTGCCATCACTTTGGCCCCTCCCATGTGCTTGCTGACCTGGATGCAAATTTGACTGACCTGTAGAGCAACTTCTCTagtgggaacaatcaccattgcttgtatattgtccttcttcaggtctagccgttcaagtaagggaatgaagtaggcACCGCTCTTGCCTGTTCCATTTTTTGCTCTAGCTAAGATATCCCTACCAGATAAAGCAATGGGAATGCTCTCCTCCTGAATAGGAGATGGCTTTTCCCAGCCCATTTCAAAAATTCCCATCAGTAACTCCCATTTCAAACAGTAATCTTCAAACTCATTTCCTTTTGTGGAGGTCACATCCGAAGTTTTGATTCTTAGATCCTTTGGAGGGAGTTTTAAAGTCTTTTTCCAGTCATCACCAGGTTTAATAGTGGTGGTCATACTCTGTGCTTGCTGCTGAGTGCCATTATTGATTGTGTTGGTATTTTTCAGCTGGTTCATCTGTTGCTGTGTCTGTGTGCCCCCGTCCTCCGGGGCCACCACTGGGCTTCACAGGGCCCCTCAGCTGACCATTTTGACTGGAAAGACCCATTATAACAGGGTTCTCTGTTCTGGCCGTGCTCATGCTGTATTAATTGTAAAGATGTCTCTTTCAAACTTCAAAACTTTTGAAAGTCAGTAGAGAAACTGTAATAACAGTTTATTAGGCTCTCCAAAACGAAGAGATAAATATAAGTCTTGCTCAATATATGAG-TCCTTTATTGCAATGCAGGCAAGCACCTGTAAGTCTCTGAACGGTATGCAGCAGTAACTTGCTCTCATGCACCGAATCAACTTTTTATTTTTTAAATAGCCCTCTAACAAGGTTGAATTATATATCTGAATTCACTCACTTCAATCGCCGAGGCCACTCC--CGCTTGGCACCCTCGGTCCTTTATTGTTG-------ACTCCTAAAAT a score=1690 s hg19.chr6_ssto_hap7 640132 39 + 4928567 ATTGCCACTCTTTCCTCTTTGGATACCTCAACCTGCACC s canFam2.chr5 73967754 39 - 91976430 GCGGCGGCTCCTTCCTCCTCGGAAACCTCCGcccgcccc a score=46425 s hg19.chr6_ssto_hap7 646286 2091 + 4928567 cttctgttgagaaaccctgAACTAGGTGCACTGTGACTTAAGAAAACTACTCCAACGCAAAGACAGATAAATGTGTTCATATAATTTTTAACTTCCAAGTTTAGGGATATTACAGCCAACATGGAAGTAAGGATAAGTTGTTGGTTAAAGAGAAGTTGTTGATCATTCATTCTATATTAGATGTAAAGAAATGAAAAATAAGGAGTGGGAAAGGC--TAcccattca--ctctgcctattgaaatcaggcttccacctgtatctctgtaccagaacttttctggtcaggggcaataataacttccttgCATTTAGCAACAGTTTCATGAGTGGACCTAATTTTT-AACAATACTTTAAATATTTGAACTTGATTATAGTCTGAAGTAAGA-------TAGAAGAGTGGTTGGAAATACAGAGAATGGCATTAGATGAACTTATCTAATGCTTTATGTTTCTTCTGTGGAACAGAAGGTGAGACTGTCTGCCAAGCATGAAGGGAGTGTGGGTAAATTAATGAAGGAAAGATGAATGTTTAAAACAGTTCCTGAAGGAAATAGGAGATGGCAGTAACCATAACAAATAAAGTAAGAGAAAAGTAAGATTGCTATTAATTTTAAACAACATCAGAGTGTGTGAGTGTGGAGTTTTCTCCAGATTTTCTGAACCGTATGTATAGAAAATACTGGATGCTGTTTTGGAGTATTCCCTGGAGATGTGGCTAGAGGATAAATGTGTTATGAAGTTGGAAGTCCCAGAAATAAATTGCAAATTTTTTTCCTCTGGCTTACTGTTCTAGCCCTTTACAGACATAGAGGTCTGGCTCTATAGGGACATAAGTACAGTTACAAGGAACTGAAAGACTTACGGAAAGTGGGCAGTTAAGAAACTGAAAGTATCTTTGAAGCCAAAGaaatgaaaaagatgtagagaaaaaagacacatatcatatgattttacttgtattattacattagggaa------------aagaaaaaaactataaagatggaaacaaatttatggttaccagaagctggagtcagtgatgtgttgtttataaaaaggaatgggaggatttgggaggtgacagaattgttttatatcttgcctgtgtctatagttgcatgattatatgtgtttgcaaaaagtcaagtaattatatgctaaaaaagagaatgttaactgtctataaattatacatttataaaATAAATTGGAATGAGAGAAGTAATGGGAGAATGGCAAAGAGCAT--------ACT---CCAATACCAAACAAAAGACTATGAAGGTGGGATATAGTCTTAGAGTAGACATGTAGGTAATCTTCATGATGTGATCATAA-----------CATCT---------------------GCACTACTTTTGT---------AACTTTCATATTAACTGTTGCACTTACTACATTGTATTCTAATTATCT----GGTGTATGTGTTTCTCTCTTTATAAGGTGAATGATTTGAAGGTGGGGAATTGAGACTTGACCTGATACACAATTGAATTTTTG-ATATCTGGATTATGCCACAATGTCTTGTGTTAGGTTGATGATCAACAATAATTTTAAAAAGAATAAAAAAGGAGTGGAGGTCAAGGAGGTCTGAGGTTAGTGTGGGGAGGCAAGATAATCTACCTA-ATATTGATTGTGGCAGCATGATGGTCAGTGGGAAGGTTGCATCATCAACATAGATGCCTGGGTGATGGCCATATTTGATACTGGAGAGAAGAAACTGGTATGGGCACCCAA-----TATGCAGTTAGGAACATGCCTGGAAAATAAGCATATGAGCAAAATAAGAAGATGTAGAGAATTTTTGTGGTAAGAAAATGACCTCAAAGTGCAAGATATTTT-ATATGAAAGAGAAGAAGTAACAGTCAGAAAAAAAATAAGAAACTTAGAGAATACAGACCTTGATCCTACCCACCTCCTCAAACTGTGAGAGAAGGAGCAGCTTTGAATTGAAGAAT---AAGAGAAATAGCTTTTGGGAGAAGAACCAAATGTCAATGACAACACAGAAATATCA---GGAGTAGGTAGTG---GTATTGGAGAGCTTTTTCATAGTAGTGCTAGGGTTCTAAGGAATTTTATTAGTGAGCAAAGAATTCAAAAAGAAACATTCCAAAATGTAAGAATGACAG s canFam2.chr35 29179301 2000 + 29542582 CTTTTGTGGAGAAATCCTGACATGGATATCCTGTGGCTTAAAAAAGCCACTACAAGAGGAAG-CTGGCCAATATGTTGGCACAGTTTT-ATCCTCCAAGT--AAAGATATGACAGCCAAAA---ATGTAAGTAAAAGTTGTATGTTGACAAGACAGTGTTGATCACTCAC-----ATCTGATGTAATGAAGTAGAAGAGTATTAATAGGAAGAGCATTTAAcaatcaggctgtgtccatt-----cttgctgcctccaccatcc---tacagaaactttcctgttcaaggccggtaatcatttctctgcattttgcaa-agtattgtggttgaatctgatttctcaGTAATGATTGAAATACTTGTTCTTGATGAC--CCTGAGGTAAAAGAGTTTTTGGAAGAGTGGTTGGAAGTA-GGAACATGGTGTGAACTGAG----TCTAATGGGGCATGTTCCCTCTGTGG--TGGTAGGTGAG---GTCACTCCTGAGAGAGAGCAGTATGGG------AATGAAGGGGCAATGAGT-CCTGTGATGATTCCTGAAGGGAGTAGGGG-CAGCAGGGACCACTG------------------AGCATGATTTTTATAATTTTATAAACACACCAGAGTGCATGCCTACAGAATTTTCTCCTGATTTTCTAGACTCCA-ATA-AGAAGATACCTTGGGCTGCTTTC-AGTGTTGGTGGGAG-TACGACAGGAGG-TAAGCATGCTG-GGGGCTGGAAGTC--AGAGGAAAGGGCCAACTTTGTCTCCTCCCACTGTCCTCTCTGATCCTATACCACCATGG--GTCCAGCTTCATGGGGGCAGCAATGTGGTCTGGGGAGGCCTGAATGCTCAGATAAAGTGGAGA-TTAAGCAACTGAGGGTAGCTTTGTAGCCAA-GAAATGAAaaagaagtcacaggaaaggttac------tgtgattccatttttacagtta-attataggattactttctcacaaaggttgaactataaggaaaggaacagatctgtggttatga-aggctggctgcgggagagagctcactaggaaagtacatgggacaggtttggaggtgatggaaacattctatggcttggccatggct--------------------ggttacaga---tcaataaaacatatagtgagagggtgaaataatactgtgtgtaaattatacattaataaaa---aTT----TTGGAGAAGCATTAGGAGAAAGGAAACAGGTAATTGTATGAACTTAGCCAAGATCAAGCACAGAGCCGTGAAGGGAGGATATAGATGTGGA-TAGAAGTTCAGGTTTGGTACATGATGAACTCATAAAACCCTTTAATCATCTACTTTGGAAAGTCTCTCCAGAGCCCTTCTTTTGTTCTTGTGACACTTTTCAGATGAACTGTTACACTTCCTACATTTTATTCTGATTACCTTCTAGATACATCTGTTCCTGTCCTTATATGATGGATTATTAGAGGATGAG-AGTGAAGACTTGACTT----CATAGTTGTGTTTCTGGATGTCCAGGAGGTACCACAATGCCTCACACTAAGTTGGTGATTGACAGCAATTCCAAGAGGAATAATACATTAATG-AGGTCAAGAAGGTCTGAAGTTAATGTGG--AAGCTGGACCATCTACCTGGATATTGACTGGGCCAGTGTGACAGCCAGTGTGGATGCTCAATTATCTGCATGGACACCCTGGAAATGGCCAGAGTAGATGCTGGGAGGAAGCA-TGGGTACAAGTGCTCAAGGCTCTGTGAGAGTAGTAGCATGCCTGGAAAGTATGTAGGTGAGGAAAACAAGA-------------------TGCAAG-------CGTCAAAGTAAAAGAAATTTTTATGTGGTGGGGAACAAGTAGCGATCAGGAAAAAAA----GAATTTAGAGAACAAATACTGTGA------------------------AATAAAGGAGCAACTCTGAACTGAAGAATGATAAGGGAAACAGTATGTGAGTGAAAAACTGACCATTGAGG----CACAGAAAAATCACCATGAAAAGGAAGTGAGTGTATTAGGAAATATGTTCATAATACCGCTAGGGTTCTAAGGAAGTGTATTAGTGA--------TTCAAAGGGAAGCATCTCAAAAC---AGAATAAGAA a score=24670 s hg19.chr6_ssto_hap7 648684 719 + 4928567 TGACAGCATGGGATAGGAAAAGGTGGGATGACCTAAGTTAAAGAAAAGAAATTAACAATATGTTGCTTGAATTTATTTTTCTAGCGATAGAACTTTTGCAAATGAAAACACTTCTTCACCATGCACTTATGTACCTTTTGGTCCTAGAGAAGAAATAATTTATTTTCAAAGATGTGCTAACCTTGTGGGTTAATTGTTATTTAAATAACAACTATTTACTCATGAGAGAGAGTGACTTGCATGACATAAAAAATTTCATAATTATTTTTGTAAGTAAGAGAAACATACAGTTTCACTTTGCTTTACA-AAACAGTCTTTTGGGTAACAGTGTATAAATTACTTATACTCCAAATCACGGTTGCCACACACAACAA-TAACATTATTT---AAAACAACTTTTTTGT--AAATCATTTTGTAAAATGGAAAAAAAAGAACATGTTTGCATTAGGTGCTTCCTGCAGATAATAAAAACAAAATGGAATTTATTTTTCCCTCAGATGTGTTTGACAT-GTGATAAAGGTAATTCTCACATAAGAAATATTGTAGAGTGCTTACAAAGAATATATAAATCATAAGAATAAATCAAACACAAGTCACTAGAACTTGTATTGCCATATTAATATAATTATTCCAAAATAAAAGTTAATCTATAGTTTCCTAAAAAAGATGACCTTTGAAAAGGACAAAAGAGAAATATTACAGCTACGTGAACTGGCATTTTG s canFam2.chr35 29181301 689 + 29542582 TGATCATATAGGCTATGGAA-GGTGAGGTGACTGCAGGTGAAGAAAAACTGTCA------TATTGCGTGGTTTTACTTTTCTCCATGTAGAACTTCCACAAATTAAAATACTTAATTGCCTTCCAAATA-ATACAGTTTGATCTCAGAGAAGAAA-GATGCTTTTTGAAAGATGCAGTAATCTTTTGGGTCAAATATAAGC-AAATAACAACTCCTTACTCATAAAGCAGACTGGTA-----GACATTAAAATTTTCAGAATCATTTTGGTAAGTAAAAAGAACATAAAATTTCACCTTGGTTTGCATAAACAGTCACTGGGAAATCATTATATAAATTATTTATATGCCAACTCATGGGTGCCATGCACTATAGTTAATACTATTTGTCAAAACAGCTCATTTGTAAAAACCATTTCATAAAAT-GAAAAGGTAGAACAT-TTTATATTAGATGCTTACTGCAGATAAGAAAGAGAAAATAGAATCCA-TTTCCCCTAATATATGTTTCACATAACCATAAAAATAATTTTCACATGACAAGTACTATATGGTGATCCC--------------TGAAAGGATCAAACAAAGTATAGGTCACTCGAACTTGTCCTG-CATATTTATGTAATTATTCCAAAATGAGGATTAATCTGAGGTTTCTTGGAAAA----ATATTTGAGCA-TACAAGAGAGAAACATTATGGTTGCATGAACTGGTGTTTCA a score=1890 s hg19.chr6_ssto_hap7 649770 37 + 4928567 AATGTCTTACCCCAAATTAAGTTTGATTATTTTTTCt s canFam2.chr35 29181990 37 + 29542582 AATATCTTCTCTCAAATTCCATTTGATTCTATTTTCT a score=6999 s hg19.chr6_ssto_hap7 650374 165 + 4928567 TTGTTTGAAAATAGGCAGGATACATAGGTCCACAATCATGCTCACTGTACTCATAACCCCACCTTTTTACCAGCTATCTATTGTCGTTTGATTTCAATTAACAGTTAGATTTGAGTGAGGCTTGAATAGGATGATCATGAGAATGGTTCTAGCATGTGAGTCTGA s canFam2.chr35 29182048 164 + 29542582 TTGTTTGAAAATGCACAGGAGTCATAGATCCAGATTCATGGTCCCTGCAGTCATGATGC-ATGTTTCTACCTGATAGGTGGTCTCATTTTATATGAATTTGCAGTTGGATCTGAGTGAGGTTGAAATGAGACAGTCACAGGAATAGTTCTGAGATGTGAGTCTGA a score=4703 s hg19.chr6_ssto_hap7 650548 91 + 4928567 AAGGTTTCCAATT--ACCTTGAAGCAGGACTTAACTCTCGGTCATATCACTTTTGTGTACGTATATAAAA----ACACAAATACATAAATAAAAATC s canFam2.chr35 29182250 97 + 29542582 AAAGTTTCCAAATCAGCCTTAAAGCAGGATTTAACCATTAGTCATATCATTTTTGTGTGTGTATATAAAAACTTACTCAAGTATGTTAATAAAAGTA a score=36267 s hg19.chr6_ssto_hap7 652152 1149 + 4928567 AATTTGTAATTTAAATAGAACTTTCAATATGGTAGACTACTGTAATGATGATCCAGTATATCAGAATAGTGAATTAAATAAAACAAGAGAATAAGTGAATGGGTGGCTATGTGAATATATACTGTACATACATAGTCCCCAGGGTGAATGAGAACTGGAACTTTGCTAATACCAACTCTCTCCCTTGCCTCTCTCTCTGCCCTCTCTCTATGTATATACATTTGTATTAACAAGAACCCAGTTCTCATTCATTCTGGGGTAGGGGGCTTTCAGAGAAAAGGTAAACACCCTTGAGGCTTTCTGAAATGTCTTCTTTTTTTAATAGTAATGACCCTTTCTCCTTTACAGTTGAGTGTGGTGCTTTGCATGAAGTCACCCATCTCT--TTCCCTAAGGAGGCCAACTTTGAAGGATAGACTTTGAAGAAAGTTTATCTCAGTGCTGTTTGTTAAGTGGCTTACCCCAAGAGGCCTCTTGCAG---AA--GTAATTGTTAAAACCATGAGGCACACCTGAGAGAAAGGCGCCAGGGACTACCTAACAAAGCTGGCACCTCTGGAGAC-ACTTTGGAAGTATTTAATACATATGCCCTGATGGAGCATCTTACTCTTCAAAGAAAACAGTTTTGAGGCACCTAAGCAATTATGTACTTATTGACTTTGCGAAAACATTTATAACATCTTAACAATACAATTATCTGTAAGCTTTCTAATGAGCCCCCAAGTGACCTACTAGTGGAACAAAAACTTTCTTGATAAGAGCCAGTTTCCAAGAGACCATTTTTAATTGTATGAAAACTGAAAAATGATGGTGTTAAGAAGCTGCTGTTAGCTCTGTGTAAACTGTGTGGACTCTTTGCCAGTACAGCCCTCAGTGAACACACATCTTTAATAGAAATTAGCAATTGCTATAACCTGTAGTCTTAGAAGAAAATAAATACTGTAGAGGCCTCCAAAGTTATTCTAGTTACCTACTCTCTATATTGGGAGACAGAATTCAAACTCCAAAATTTCAAATTCTTCTTTGTTTTATGTCTAAGTGGGTTAGAATAATCTAATAAAATACTCCCAATA-AACAAATCAATCCTGCATTCTTTTTAAATGTTCTGTGAAAGCAATAAACCTTGTAGCTAATTTTcagtatggcatatacacc s canFam2.chr35 29182347 1000 + 29542582 AATTGGTGGTTTAATTAGAGCTTTGAATCTGGAAGATCATTGTCACAAGGGTCTAGTTTATTATAATAACTAATTGAATGAAATAAGAGAATAAGTGAGTGAATGTTTCTGTGGATACA--------------------CAGAGTTGAT----------------------------------------------------------------------------ATTAACAAGGATACAGCTTTCATTCATTCTGGATGTAGAAGCTCTTAGAGAAAAA-TAAACACTC--AAAGGTTCTTACAGCATCTTCCTTTCC-AATAGTAACGACATTTCCTACTTCTCAGTGGAGGGAGGT--TTTG-GTGTAATTACCCATCTCTGTTTCCCTGAGGAGACCT-----------TAAACTTTGAGAAAAGTGCATGCCAATGTTGCCGGTTAAGTGGCCTTCCCCA-GAGACCTCTTCTAGTTCAACTGAAGTTGATAAAACTAGGAGAAAAAC-TGAG-GAAGCGCACCA---ACTGCTGAACAAAGTGGCCTCCTCTGGAGATTACCCTGGATGTGGTTGGTTTGAATGCCATGATAAGGCATCTTGCTCTTCAGAGATAATAGTTTTGAGGTGTTTAAACAATTATGTACTTA----CTTTGTGAAAATATTTATACCATTTTAATGATATAATTTTCTGTAAGCTTTCTAATGAGCCCTCAAGTGACCT--CAGTAAAACAAGACTGTGCTTGGCAAAAGCAATTTCCAAGGAGACCATTTTTAATTGC-TTAAAATTTCAAACTGATGGTGTT----AGCAGCTGCTTGC------TGGAATGGGTAGGCTCCTCCCTCATACAAGTCCTGATGAGCACATTTATTTAATACAG--TAACAGTTACCATAAGCTGGAGTCTGAG-AGAGGTTAAATGCTGTAGGGGTCTCCAGAGTTATT-TGGTTACCTA--TTCTGTATCAGGCAAAGGAATTCACACTCCAGAAATTCAAATCCTTCTTTGCTTTGT---TAAGTGA--TGGAATAATCTGATGAAATACTCCAAATACAGTGATCCAATCCTTAATTTTTTTAACCTATTTCATGAAA----------CTGCTACTAATTCTCAATGTAGTATATATATc a score=2003 s hg19.chr6_ssto_hap7 653340 94 + 4928567 tgaacaatgaaccaccaattgttaggtatgtgacttaaagaaagctagtt---aatttggtg--------gctcagttgtaaaaaag-atggtaatagtatctctc s canFam2.chr35 29184401 102 + 29542582 TGAAAAA--AATAACCAACC-Ttagatatatgacct-tagaaagtttcttagcaattctgtgactccattgcttatctgtaaaatggtataggaatagtatttctc a score=2998 s hg19.chr6_ssto_hap7 653443 147 + 4928567 atgttaaatgggttaatatatattaactacattaaataacatcacatataagcgtggaagagatgttagtGCTCATCATTCAGCCACCCTAGTAACGATGTATTATTTTCTATAGTTATT---TCAAAA---------------AATACTTTTGTATTTTTGTTT s canFam2.chr35 29189500 147 + 29542582 ATATTGAGTAGGTT--TTTATGTTAGTCCTATTTAATAG--TCATATATAA--------------TAATCTCCAATCATTCTACCATCCAAATAACAATAGGTTGTTTTCTACAGTTATTGATTTAAAAGTATTATTTTGTGTCAATGTTTTTTTAATTATATTt a score=12593 s hg19.chr6_ssto_hap7 653613 319 + 4928567 gaagagaaaattcagattaaagaaaccataactatcttgactaagattgcactggtatttatcagtagtgttcaacttcaaatgcacatcttctgattatgagaatggtggttcttccatcaccTTATAGCTATTTCCACATCCATTTACAATT-------CAAGCTCTTCCAATA-CTGGAAGTGTTAAAAATGGGATGGAAAACTGTAACTGGAAGAAATAAACACTGACTATTTTGTTTCACTTAAGGTTAATCAAATTTCAAAATGCACATTCTTTTTCCCATTACGGTGGTATAAGTACACTCATTCTGTCTCTTCCCCTga s canFam2.chr35 29191138 311 + 29542582 gaagagaaaaatgaagttaagaaaaccataacggtcttgaccaagacttaac---------------atgcccaacttcagactcaagtctgctgactacaagtctggtagtcctttcagcaccccacagctatttctatgCCTATGCACAATTGTTACACCCAGTTTTTCCAAGGGCTGATAGGGTTGAAA-CAGAATGGGAAACTGCATCTAGAAGAAATAAGCATTGTCTATTTTGTTTCTCTTCATGTTAATCAAATTTCAAGGTATAGAATCAAGTTCACAATCTgatggcataaacacactcactccaactctcctactaa a score=24722 s hg19.chr6_ssto_hap7 664037 907 + 4928567 TTTTGACAGCCTCTTTGATGTCCTTATTCCTCAATGTGTAAATTATAGGGTTTAGCATGGGGGTAACAACACTGTACAACACTGAAACCAACCTATCTTTCTTTAATGAGTAAGTTGAGATGGGCCGTACATATGTAAAGATGGCGCTGCCATAAAAGAGAAAGACAATGGCCAGGTGGGAGGCACATGTAGAAAAGGCTTTTCGTCTTCCCTCTGAGGACTGGATCCTCAAGATGGTGGAGATTATGCAAATGTAGGAAAGTACGATACAAAGGAAAGGAGTCCAACCAATGAAGACCCCAGTGGAT------------AGCAGTGCCAACTCATTGACAGAAGTGTTTCCACAAGACAAGATCAGCAAAGGGGGGATGTCACAGAAGAAGTAATTAATCTGATTGTTGCCACAGAAGGGCAGGCAGAATGTCAACACTGTATGCACCACTGAGTTAAGGAAACCAGCAGCCCAGCATGAGGCTGCTA--ATTGATTGCATAGAACCTTGCT----CAGAATAACTGAATACCTTAAAGGATTGCAGATTGCAATGTAACGATCATATGCCATTGCTGCCAGTAGGAGACACTCTGATCCTACAAAGAAAACAAATGCAAAAAGTTGAACCACACACCCCACATAAGAAATGCTTTTTTTCTTTGAGAGGAGGTGCACCATCATCTGGGGGACATTGCTGGTGGTGTAGCAGATGTCAATAAAGGCCAAGTTCCCTAGAAAATAATACATAGGTGTATGCAGGTGTGGATCAGTCACAGTCGTCAAGATCATTAATATATTTCCTCCCAAAGTACAGAAATAAGTCAGAAAGAAGATGGTGAATAGTAAAAACTGCAATTCATTTAGGTTGGAGAATCCCAAGATGATGAATTCAGTTATAGCTGTTTGATTCTTTCTTTCCAT s canFam2.chr18 16667310 907 - 58872314 TCCTGAATGCATTTTTCACCTCCTTGTTCCTCAGACTGTAGATGAGGGGGTTCAACATGGGGATTACCACAGTATAAAATAGAGAAATCACTTTATTGATATCCAGGGAGGGACTGGAGCCAGGCTGAACATAGATAAAGAAAAGTGTCCCATACAGCACAGAGACAACAGCCAGGTGAGAAGAGCAGGTAGAGAAAGCTTTCTGCCTTCCATCAGCAGTCTGGATCTTCAAGATGGCCACCAGGATACAAACATAGGAGACCATGATG------------ATCAGGCCACTGAGCATTCCTATAGATCCTGCCATGATGAACAACACTAATTTATTGATCCAGGTGTCTGCACATGCTAGGGAAAGCAGTGGAGAAATGTCACAGAAGAAGTGATTGATGACATTTGGACCACAGAAGGGTAAGCGAAATGTGAGAATTGTATGAGTCATTGTGCTTATAAGAGC-----CATGGAATAAGGCC-CTACCACCAGCTGCACACAGACCCTCTGGGACATAATGAGTGTATACAGCAAGGGCTTACAGATGGCCATATACCGATCATATGCCATGGAAGCCAGGAGAAAACATTCAGTTGCCACAAAAAGGCCAAAGAACCACATCTGTGCAGCACAACCCATGAAAGAGATGTCTTTTTTCTCTGCAAAGATATCACACAGCATCTTGGGGGCAATGGAAGAAGAGGAACAGAGATCAACAAAGGACAAGTGGCTGAGAAAAAAGTACATAGGCGTGTGGAATCTGGGATCAGTCCATATGAGAATGATCATCCCTATGTTACCCCCCAGGGTGACAAGATAGACGAAGAGAAGCATGACAAAGAGGACAATCTGTTGGTGGAGATGATCTGTGAGGCCCAAGAAAAGAAATTCAGTCACTCCTGTCTGATTCTTCTCTTCCAT a score=514 s hg19.chr6_ssto_hap7 664944 117 + 4928567 GATGTCGCCTGGTTTCCTTTCAGGAATTGGGCAAAGAGAAGACCA-GATTATA------AAAATGAATCATATGCTGCAATAGCATG---ACCTGAAAAATAAGGGAAAAAACGGTTACAAATAAAA s canFam2.chr17 6273578 116 - 67347617 GGTGTCA------TAGCTACAAAACAATGAGAAAAACAAAAGCCATAATGATAATGTACAAAGAGGACCCCATACTG-----GCATGTTAACTTGAAAGATAATATCAAATAATATTGGATATAGAA a score=19520 s hg19.chr6_ssto_hap7 682794 892 + 4928567 TACCAAAGATTTTCTTCAGAGCCATCATCACTTCTTTGTTCCTAAGGGTGTAGATTAGTGGATTCAGTACAGGGGTGACGGCGCTATACATGATGGCCATTATCCGGTCCTGAATCATGGAGGTGGCTGAAGCAGGACGAATATATGTGAAGCCCACAGGTCCATAGAAAAGACATACCACCATAAAATGGGAGGCACAAGTGGACAGAGCCTTGTGGAGTATTCTGCAGGACCTGTTCTTAAACAGAAGGAAGCC----AATTACATAGAA---------GCAGGAGAGAAGAGTCAGAAAGAAAGCTCCCATGGATATGCTGCCTGTGACAATGGAAAGAAGCCATTGATTGAGTAATGTGTCACTACAGGCCAATTCTAAGAGCGGCTTGACATCGTAGAAGAAGTGATTGAGTTTCTGAGAGCCA---CAAAAACTCAGGTGTGCAGTCATGACAGAATGCATCAGAGCGTAAAAGAAGCTGATGAGCCAGGCCGCAGCTGCCAACAGAATACACACCTGGGGGTTCATGATGACAGTGTAGCGAAGAGGATTGCAGATGGCAACAAAACGGTCAAAGGCCATGATAGCCAGTAAAATGGCCTCTGTGCTTCCCAAAAAGTGGAAGAAGTGTAGCTGGATGATACAGCCTAGAAAAGATATAGCCCTGCGACTGCACACGAGGTTTACGAGCAGCTTGGGCAGTGTCACTGAAGAATAAGAAATATCCAGACAAGAAAGGTTTCCCAGAAAAAAATACATAGGGGAGTGGAGTTGTGGTTCCAAAACAACCATCACCAATATAGATCCATTTCCAATCAAGTTTATCAGGTAAATGATTAAGAAAATCCCAAAGAAGAAAGGCTGCAGCTCCTGAACACCAGTCAGGCCAAGTAGAAGAAACTC s canFam2.chr20 50041825 889 + 61280721 TGCCGACAAGCTTCTTCAGGGCTGCCTTCATGTCCTTGTTCCTTAGGCTGTATATAAAGGGGTTCAACATGGGGATGACCACCCCACACATCAGGGCAGCTGACTTGTCCTTCTGGGAGGAGGCAGGTGATGTGGGCTGCAAGTACACAGCAAAGATGGTGCCATAGAACAGTGACACCACAGTGAGGTGTGAGCCACAAGTGGAGAAAGCTTTCC---------------ACTTGCCCT-GAGCAGAAGGGATCTTGAAGACTGCCCAGAAAATGCAGGTGTAAGAGAGGAGGATGCATGAGAGAGGACTGATGCCCATGATGATTCCAAAAGCAAAAATCACCAGCTCATTGGTGTGCGTGTCAGAGCAGGAGAGCTTCAACAAGGGCATGAGATCACAGAAGAAATGAGGGATTTC---AGAGCCAGCACAGAAGGTCAGTTGAGCCATGAGGCAGGTGTGCACGAGTGACTGGAGATTGGTGATCAGCCATGGCACCCCCACCAGCAACCCACAGACACAAGGGCTCATGATGACTGAGTAGCGTAGAGGGTGGACAATGGCCACAAACCGGTCAATGGCCATCACAGCCAGGAGGAAGCTATCCGTGGTCCCGAACAGGTGGAAGCTGTACATCTGAGCAAGGCAGCCCACAAAAGATATAGCCCGGTTCTGGGTCCAAAGATTCACCAGCATCTTGGGCACAGTGGTGGAAGAGAAGAAGGTATCGACGAGGGACAGGTTGGAGAGGAAGAAGTACATGGGAGTGTGGAGGTGGGAGTCTGTGATGATGGCCAGGACGATGAGCAGGTTCCCAAAGACGGTGACCAGGTACACAGAGAGGAAAAGTCCAAAGAGGAGAGTCTGATGCTCTGGTTTTTCTGTGAGTCCCAGAAGGAGGAATTC a score=4865 s hg19.chr6_ssto_hap7 692771 148 + 4928567 AACATTTTTTTCTATACGCACATGTACT-TCTGAATGGACATAAAAGAAACTGATAACTGTTGTAGTCTCTAGGAAGAGAAACTGGCTGTCAAGGAAACAAAGGCAGAAGAAATACTCTT------------TTTAGTATATTTTGAATTTTGTACCATGT s canFam2.chr15 63929389 161 + 67211953 AATATCATTGCTTGTAAATACATAAATTCTCTGAAAGAATAAATAAGAAATTGATAACTTTATTTGCCTCTGGGAAGGAAAACTAAGGGTCTGGGGAACAAGAGTGGGAAAGAGACTTTTCAATGTACAGTCTTTTGTGTCTTTTGAACTTTGAACAATGT a score=2692 s hg19.chr6_ssto_hap7 702951 221 + 4928567 AAATATTTTCAT----ACAG---AGAAGTTGGCTAAACAACATTCTTTAAACGTTAGGAAAATGTTGttttattatttattattttttaaattttCTTTTTACCAAATAGATTTTTGATACAATTTTATTTTATGGGTCAGAGAACCAAAAATAATATTTTATCTATCATTTGTACTTTTAAAAGACATGGTAAA-AGTTTTGAAAAATATGCAACATACATGGCTATC s canFam2.chr18 41051694 209 + 58872314 aaatgttttcttttgcacaagtaagaagttggctgtgtgactt---------gtaaggATATTTTAGTTTCAACAGTGTGTAACCTGTAGATCATTTATCTATTAAATA----TTTTGTTCAAATCTATTCTGTATATCAGAGAGTCATGAAGAATA-------AATTATTGCCATAACGAAAAGGTGAAGTAAACAGGTTATATATATATTTAAATTTCATGGCAATC a score=20514 s hg19.chr6_ssto_hap7 704996 915 + 4928567 GAAGTGATGCTGAATACAACCTCAGTCACCGAATTTCTCCTCTTGGGAGTGACAGACATTCAAGAACTGCAGCCTTTTCTCTTCGTGGTTTTCCTCACCATCTACTTCATCAGTGTGACTGGGAATGGAGCCGTTCTGATGATTTTCATCTCCGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAACCTGTCCTACCTGGATATCTGTTACTCTACGGTGACACTGCCAAAAATGCTGCAGAACTTTCTCTCTACACACAAAGCAATTTCTTTCTTGGGATGCATAAGCCAGCTTCATTTCTTCCACTTCCTGGGCAGCACGGAGTCCATGTTGTTGGCCGTGATGGCATTTGACCGCTCTGTGGCTATCTGCAAGCCACTTCGCTACACTGTCATCATGAACCCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGGTCATTGGTTTTTTCCATGCCCTGCTGCACTCCATAATGACTTCTCGCTTGAACTTCTGTGGTTCCAACCGTATCCATCATTTTCTCTGTGATATTAAGCCATTGCTAAAGCTGGCCTGTGGGAACACTGAGCTTAATCAGTG-GCTACTCAGTACTGTCACGGGGACAATTGCCATGGGCCC--------CTTCTTTCTGACACTTCTCTCCTATTTCTACATTATCACTTATCTCTTCTTCAAGACCCGTTCTTGTAGCATGCTCTGTAAAGCACTGTCCACTTGTGCCTCCCACTTCATGGTAGTTATTCTTTTCTATGCACCTGTTCTCTTCACCTATATCCATCCTGCGTTA---GAGAGCTTCATGGACCAGGACCGGATTGTTGCCATCATGTACACTGTGGTCACTCCTGTACTAAACCCACTGATCTATACTTTGAGGAACAAGGAAGTGAAGGGGGCCTTGGGTAGAGTG s canFam2.chr5 78664592 903 - 91976430 GAAGTGAGG---AATCACACTTTGGTTACAGAGTTCATCCTGCTGGGCATCCCACACACAGAAGGGCAAGAAACCATGCTCTTTGTTGTGTTCTCTGTCTTCTACCTCTGCACCCTACTAGGAAATCTGCTCATCCTTGTGGCTGTGATGTCTGACTCCCACCTCCACACTCCTATGTATTTCTTTCTTTGTAACCTCTCTGTGCTAGATATTGGCTTCTCTTCTGTGAGCACGCCGAAGATGTTGGCCAACCTGCTGGTGAGGAACCGAGTCATCTCCCTGGGGGGCTGCATGTCTCAGGTCTTTTTTTACCACTTCCTCGGCAGCACTGAGTGTCTGCTCTACACGGTGATGGCGTATGACCGGTTTGCTGCCATCTGCCACCCACTGCGTTATACCACCATCATGAACCGCCGGGTGTGTGCCTTGCTGGCTGCTGGAACCTGGTTTACTAGCTCTTTTCATGCCACAATCCTCACCACTCTGACCTTCCAACTGCCCTACTGTGGGTCTAATGAGGTAGACTATTTCTTTTGTGACATCTTTCCTGTAGTCAAATTGGCGTGTGGTAATAC----CCTCATCATTGAGACAGTGAGCTTCACCA-----ACATCGGCCTTGTGCCCATGATGTGTTTTCTGCTCATCCTTGCCTCTTACATCCGCATTGTCATTG---CAATCCTAAAGATGCACTCTGCTGAGGGGAGGCGCAAGGCAGCGTCTACCTGTGTCTCCCACCTCTCGGTGGTCACACTGTTCTTTGGGCCCTGTGCCCTCATCTATACCCAGCCATCTTTGAGCGAGGTACTCGTAACCCCAGTGCAAATCTTTG---------GCAATGTAGTCACCCCCATGCTGAACCCCACAATCTACACTCTGAGAAACAAAGATGTCAAAGGAGCCTTGAAAAAACTG a score=55575 s hg19.chr6_ssto_hap7 706460 1203 + 4928567 TTTGTTCTTTTAATGGTGATTCAAAATGCAAAAGACATAAAAAGATGTCAAATGTTTCTC-CCCATCTCTGCCCTCC----GTCACTGACTTACTCTTCATATACAATCAATGTAATCAGTTG-TTATCTGTCCTCACAGAGATCCTTTATGC-TACACAGTCAAATACAAATATTTTCTTTAAAAAAGAATGGCAATGAACAATACATGTTATATGAGCAAACCAATGTTGAGGGCAATGtgtatcttggagatctttccctattagaacatagag-cttctttatttt--tttaacatgcatgg--tatatgccactttgttcatgtattatatttgatatatcagtctcctatcattggacatctatgttatttccaatcatatgttgcagtgtataatcttgtgtacacgtcattctatatatgtgcaagtctatttgtaggacaaactttcagacatggaaatgttaggtcaagagatatcgttattgtaattcagatagatactgccaaattgccctccccagaggttataaaaaatttcatcaccacttgcaatgtaaaagtgTTTAGATTTTACACTACATTGAATATGAATAATGCCAATGACTTATTTTGTAGATGCTTCCCTGAAAATATTCTACTTTTACAGCCTGGTTATGTAAAAAATGACATCCTAAAGACACTTTCCATAACATGGAAGTCTGCATAATTCTGCCATTGTTAT-AGAAAGTTTTCAGACTATTTGAAGCCCAAGCAAGATGGCAACTGGGAGAAAGGAAAAGCTAAGATTACAGCAATTCTTGTCATTGTTAGCTGGCACACAGGCAACATGAAGTGTTTTCCCCTACTTCAGCATAAAATACTTAAAACTTTCCTCTTACTACACCAACAGTTATTCATGTGAAAAATTAATCAATTGTGTTGTTTATTATTTTAATCAA-AAAAAGCTCTACAGGTGTTAGATTTATGAAAGTCCTGCACA-------------AAATAAAGGAAAGGTGCCCTAAAAGACCCACCGTTTAACTAAAGAAAATGAATCTCACACAGAGGACATGCTGCAGAGAGAATGAGCTACTGAAACAC-ACTAGAATGTTTCATTTCTTTTATGACACAAAAAGAATAGGAAAGAGTGGAAAAAGGGAACAAACTTTT-ACTAAA--AGTTGACAATTTTATTTTTACATTTTATAATACAAATGAAAAATGCTTTTTACTT s canFam2.chr12 68501250 1198 - 75515492 TTTGTTTTATAAGTAATGATTCAAAATCTAAAAGATATAAAAGG-TGACAAGCCTTTTTCATTCATCCCTGTCCCCACCCAGCCATCCATTTACTCTTCACGGGCAACCAGTATTACCAATTGCTTATCTGTCCTTCTAGAGAGCCTTCATGCATCCACAGGAACATATGGGTATTTCTTCTAAA-------GATAGCAAACAATACATTTT----GAACAAATCAAttttcagtacaatgtgtatcttggagctccttccccatcagtatatataggcttctttattctgttttaacctgcttggcgtatatgccattttgcggttgtatcatacttgataaatcagtcccccttcagtaggcatctatgttacttcccatcttgtgttacaatgca--gtcttatactcacgtcatcttgtacatgcgcaagtctacttgtatgataaattcctaggcatggaaatgttaagtcaaagg-------tactataattgttacagatattgctaagttgccctccccaag---tatagtaattttcactcccatttgcaatgtGAAAAAGCTTAGCTTTTACACTGAGCAGAATATAAACAATATCAATGGCTTACTTTCTAGGTGTTTCTCTGA---TATCCTACTTTTATAGCCCAGTAATTTAACAAAGGACATTCTGAAGACAACTTCTTTACCATGGAAATCTGTATAATTTTACCATTGCTATTAGAAAGTTTTCTGATTATT-GAAGCCCAAGAAAAAGAGGAACTAAGAGAAAGGAGAAGCTGAGGTTAAGGCAGTTCTTGCCAACTTTAGCTGACATATACAGACTGGAAAGTCTTTTTTCCTACTGCGGCATAAAAGATTTTAAATTTTCCACTTAATACACCAAGTGTTGTTCATGTGAAAAAGTAACCAATTGTGCTG----TTGTTTTAATCAACAAAAAGTTCTACAAGTGTTAGATTTAC-CAAGTCTTGCACAAGAGAACTTTACTAAATAAAGGCAAGTTGTCC-AAAAGAACCAC--TATAGCTAAGGAAAAAGAATGTCATGTGGAGGGCATGCTGCAGAGATAATGTGCTAGAGAAACACAACTGAAGTACTTTATCTCTTTTATAATACACAAGGAATACAGAGGAGAGAAAAAAGGGAACATGTTTTTAACTAAAACAGTTGACAATTTTATTTTCACATTTCACAATACAAATGAAAATTGCCTTTTTTTT a score=19714 s hg19.chr6_ssto_hap7 725593 890 + 4928567 CTGAATACAACCTCAGTCACTGAATTTCTCCTTTTGGGAGTGACAGACATTCAAGAACTGCAGCCTTTTCTCTTCGTTGTTTTCCTTACCATCTACTTCATCAGTGTGGCTGGGAATGGAGCCATTCTGATGATTGTCATCTCTGATCCTA------GACTCCATTCCCCTATGTATTTCTTCCTGGGAAACCTGTCCTGCCTGGACATCTGCTACTCCAGCGTAACACTGCCAAAAATGCTGCAGAACTTCCTCTCTGCACACAAAGCAATTTCTTTCTTGGGATGCATAAGCCAACTCCATTTCTTCCACTTCCTGGGCAGCACAGAGGCCATGTTGTTGGCCGTGATGGCATTTGACCGCTTTGTGGCTATTTGCAAGCCACTTCGCTACACTGTCATTATGAACCCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGATGATTGGTTTTTTCCATGCCCTGCTGCACTCCCTAATGACCTCTCGCTTGAACTTCTGTGGTTCTAACCGTATCTATCACTTCTTCTGTGATGTGAAGCCATTGCTAAAGCTGAGCTTAA------------TCA-GTGGCTGCTCAGTA---CTGTCACAGGGACAATCGCCATGGGCCCCTTCTTTCTCACATTACTCTCCTATTTCTACATTATCACCCATCTCTTCTTCAAGACTCATTCTTTTAGCATGCTCCGCAAAGCACTGTCCACTTGTGCCTCCCACTTCATGGTAGTTATTCTTTTGTATGCACCTGTTCTCTTCACCTATATTCATCATGCCTCAGGGACCTCCATGGACCAGGACCGGATCACTGCCATCATGTATACTGTGGTCACTCCAGTACTAAACCCACTGATCTACACTTTGAGGAACAAGGAAGTGAAAGGGGCCTTTAATAGAGCA s canFam2.chr15 21648007 890 + 67211953 CCGAATCAAACAAGAGTGACTGAGTTTGTCTTCTTGGGGCTCACAGATAACTGGGCGCTGGGGACGCTACTTTTTGTGGCATTCTCCCTGGCTTATGTGCTCACCCTTCTGGGGAA------CACTCTCATCATAGTGACCACGGCCCTTACCCGGCGCCTCCATACCCCCATGTACTTCTTCCTGAGCAACCTGTCCTTCATTGACACCTGCCACTCCTCGGTCACTGTGCCCAAGATGCTGGAGGGCCTGCTTAGGGAGAGAAAGACTATTTCCTTTGATGACTGCATTGCGCAGCTCTTCTTCCTACACCTGTTCGCTTGTGCTGAGATCCTTCTGCTGACCGTCATGGCTTACGACCGCTACGTGGCCATCTGTGCCCCGCTGCGCTACCCCAACGTGATGAGCATCCGGGTGTGTGTGCAGCTCGTCCTCGCCCTCTGGTGGGGGGGTACCGTTCACTCTCTGGTGCAGACCCTCCTGACCATTCGTTTGCCCTACTGCGGCCCCAACGTTATCGATAGCTACTTCTGCGATGTGCCCCCCGTCATCAAGCTGGCCTGCACGGACACCTACCTCACGGGAGTGCTCATTGTCTCCAACAGTGGAACCATCTCCCT---CACCTGTTTCCTGGCTTTGGTCACCTCT---TACACAATCATCCTGGTGTCTCTTAGAAAACAGTCTGCTGAAGGGCGCCGGAAAGCTCTGTCTACGTGCTCAGCCCACTTCATGGTGGTCGCCTTCTTCTTTGGACCATGCATCTTCATCTACACTCGGCCAGACACCAGCTTCTCCATCGACAAGG---TGGTATCTGTCTTC---TACACCGTGGTCACCCCTTTGCTAAATCCCCTCATTTACACCTTGAGGAATGAGGAGGTAAAAAGTGCC----ATAAAGCA a score=23276 s hg19.chr6_ssto_hap7 735036 917 + 4928567 ATCTTCCGAAGTGCCTGATGCACCTCCTTGTTCCTCATGGTATAGATCACAGGATTGAAGAGAGGGGTGACCACAGTGTAGAGCAGGGAGAAGACCTTGGAGAGGAGCTGGGAATGGACAGCAGAGGGTGCAACATAAAAGATCATGAGCGTTCCATAGAATGTGGTCACTACAGCTAGGTGGGAGGAGCATGTGGAGAAAGCCCTTCTCCTGCTTGCCCCAGCAGGAACTCTCAGCACTGCCACCACAATTCTGGCATAAGATGTCAGAATCAGTCCAAAAGGAATAGTGAGGCAGAA-------CACAGACAGAATGAGAGTTGTCACCTGAGCCACTCTGGGATCCGAGCAAGCCAGGCCCACGAAAAGCATAAAGTCACAGTAAAACTGGTCAATGTGGTTGGGGCCACAGAACCTCAGCTGGGTCACCAGGGCCACAACCAGTCCATCTACCACAAATCCAGAGAGCCAGGTTGTGACCACCAGCCCCATGTACCGTCTGGGCC--CCATCAGGAGTGGGTAGTGGAGTGGGTAGCAAATTGCCAGGTAGCGGTCATATGCCATGACAGCCAGCAGTAAGCATTCAGCTGTGGCTAGAGAGCCGAAGATAAAGAACTGGAGCAAGCAACCAGCCACAGAGATAGTTGCTTCTTGCAG----GAAGCCCTCCAGCATTTTTGGCATCACTGCGGAGGTGTAGAGAATATCCAGGAAGGACAGATTCGCCAAGAAAATATACATGGGTTTGTGGAGCCTCTGGGAGCTAACCACTGCTACAATAATCAGCATATTCCCTATGATGATGAAGACATAGACAGCAGTGAATACAATAAAAAACAAGAAATGCAGTTCAGGGATGTCATAGAAGCCAAGGAGGACAAATTCA---GTAATAGTTTCGTTTCCTGTGGAGACAATTTCCATGTC s canFam2.chr6 44188159 920 + 80642250 ATCTTC---AGGGCTTCATGGATGTCTCTGTTTCTTAGGCTGTAGATGATGGGGTTGAACATGGGTGTCAGGATGGTATAGAGAAGAGAGAATCCTTTGCGCAAGAGTTGTGAAGAATTGGCTGAAGGCACAAGATACGTGGCAATCAGTGTCCCATAAAACACTGTGACCACGGTGAGGTGGGAGGAGCAGGTGGAGAAGGCCTTTCTCCGACCTGTGCCAGGTGGAATTCTTAGGATAGCAATAAGAATGCAGGAGTAGGAGGCTGCGATGAGGAGAAACGGAAC-------CAGAGTTACTGCCGAAGAGGTGGCAAAGGCGATGGTCTCCGTCAGTGAGGTGTCTGTGCAGGAGAGGTGGACGAGAGGGGTGAAGTCACAGAAGAAGTGATCAATTTCATTAGGTCCACAGAAGGTCAATCTAGATAGTAAGACCATAGTGATTGCTGTAAGAAGGAAGCAGCAGAGCCAAGAGCTGGCAGCTAGCCTAATGCAAAGG--GGGCCAGTCATGAGGATGGGATAGTGGAGAGGTTGGCAGATGGCCAGGTATCGGTCATAGGACATCACAGCCAGCAGAAGACACTCTGTTGCAGCCAGAGATCCAAAGAAGTAGAACTGTGCCATGCACCCAGCAACAGAGATAGTC-CTCTGTTCAGCTATGGTGATCAGTAACATCTTGGGGACAATATTGGAGGTATAGCAGATCTCTAGAAAGGACAAGTTCACCAGGAAGAAGTACATGGGGGTGTGGAGGTGATGGATGAACAAAACTAGCAGAACAATGAGGATGTTGCCAGAAATGACTAAGACATAGAAAACTAAAAACATTATAAAGAGAAAGATATTTAGCTGTCGGATAGAGGAGAATCCTTGAAGCATAAATTCCACTATGGTTGTTTGGTTTTCCCAGGGCAGGATCACCATGCC a score=7944 s hg19.chr6_ssto_hap7 745144 144 + 4928567 AGAAAAGATAA--AATACGGAATTCAGTCGGCCAGTGGCCCGCAATCCTCTTCTCTCGGTTCCTCTTTCCTCGCTCAAGATGGCGCTGCTCGCGAAGCGTTCTTGGCGTTGGGCGGCCGCAGCGGCTGCTTTCGAAAAGCGCCAGc s canFam2.chrX 65360424 145 - 126883977 AGAGAAGATTACTGGTGCTGAGTT-GGTCCGCTAAAGTCCCACAATCCTCTGCTCTTGGTGTCCTTTTCCTCGCTTAAGATGGCGCTGCTCGCGATACGTTCTTCACGTTGGGTAGCTGCAGCGGCTTCTTTGGAAAAGCGCCGGC a score=107400 s hg19.chr6_ssto_hap7 746586 3003 + 4928567 ATAATAAATGAAAAAGAAATCAAAGCAAGAAAAATTAGTGACAATTGTAT------AAGAAAATGACATTTAGCACCTCAATTAGGTCAAAA-CATGTTTATTTCTCTTTTATATTATTAGTTACCTGTAGAATCAATAAAACCTGCAAGGGACCCTATAAATAGTTATCAAATAAATTGATTACTGGATTATATCAATATACATAAGAAGGGTAAAATTGCATTATTACTTTTTGTAGATGTACTAGAACATCTACAGTGATGGGAAAAAATCATGAGAAAAAAGAAGAAAATTAAAATGGTTGAACCAGAGATA---TGGGAGAACTAAGAGAAACCAATAGCTCTGGATATATTCTTTGAAATGTTCTTAACAGGTCATTCTGTATTTCTTGCAATCTAAGAAACAGATTCAAAATAACAGATTAATTGGTTTTGTGAAGCATTCTCCCCATTGGAAAGCCAAGAATGCTTGGAGACTCAGATCCTCAGAGAGCTTAAAGAGAGACAACAAACCTAAGAGAGGCTTCCTCAAGAGGGATCCACTATGTAGATAAAAAAGAAGATAAGCAAGTCAC-AAATGCCATCTGCCTTCA---CTGGTTATTTCTCCAAATAGAAAATAGAAAGACACCTTTGAGATAATATCTTCTGGAAAACACTGAAAGAGCCCCCAGAGGAGAATGAACCAAGGGCTCTTCAACTGCAAAAGGATATCAGTGTGTGGACTTGTATTTCTAATACACAACCTTGAATATGGCTG------------GAATATTGAATTTGTGTATATATTCAAGTGTATCTTTGGGTGTTTATAGTTTTATGTTCAGTGTATTTAGACTTTTACTGTTATCTGTAATAATGCCAA-----TAGAATACATGATTTGCAACTTTAGATAAATCTGGCATCTGGGA--ATATTAGG-CTATTCTTCTGTGCCTGTATTTTGAAATATAATTTGACAGTGTGTGAATTTGTGGAGTTTATGTGTGTAGTTTGGGGATTTTCATGTTTAC---AATGTAAGAGGACTAAGTTTGAAAGTCTGTAAGATGCAGAAATAAGCAATTAAGGAAGTTCTTGTCATCTTTTGCCTGAGCATGTTTTAAAACTAGAGAAATGCTCACCCCTCTAAATAGTTGAACTGTTTAATG--CTATAGGAGCTTAAAAAGAGAGGATCTTTCTCATTTTTTTTCTCCTCCTTGAACACTGTGAAATTTAT-----GGTAAAATGAC---AGAAAAAGAAGAAAGA------CTAAGTGAATCTGGTA---------------------------------------------------------------------------------------------------ACTAAAGAAAGAGCTGGAAAAAA---------------GAAAACTAGAGGGCA---------AGAGGTGATAAGAGAGGTCACCTCTTATCAGACAGGAGACAAGTTGATGGA-------------------GAAAAAGATCTGCTATGAGGGAAAATTC-----------------TGTCTCCAGCCCTGCAGG---AAGAATT---------GGAAAATCAG-----------------------AAAAGAGTGAAAAGGGAGCTAGACTGACTTAATCTTCAGCCCAGGTAAAACTGGAAAGACAGTTTAACATGTTCTTTAGAATGATAGGCACTATCAGGAAGagatgaagtcagggattcaggctcagagagacaaatactcatccaggatcccaaga--gtgagcaagggtggaatatggactccaggcaaggctgcctaatttcaaagtccatgATATTCTAATAGAAAGGGAGATCTAGTGCTGC---GATCAGATGCAGAGAGAGGTCATCTTTGCCCATTTCACGATTCCATAGTTGTGATTTTTCCTTGCCATTTCTTTTGTCTTCCAGTCAAAGGTATGCAGGCAGGATGAGTGCAAACACCTCCATGGTGACTGAGTTTCTTCTTCTCGGCTTCTCCCACCTGGCCGACCTCCAGGGCTTGCTCTTCTCTGTCTTTCTCACTATCTACCTGCTGACCGTGGCAGGCAATTTCCTCATTGTGGTGCTGGTCTCCACTGATGCTGCCCTCCAGTCCCCTATGTACCTCTTCCTGCGCACCCTCTCGGCCTTGGAGATTGGCTATACGTCTGTCACGGTCCCCCTGCTACTTCACCACCTCCTTACTGGCCGGCGCCACATCTCTCGCTCTGGATGTGCTCTCCAGATGTTCTTCTTCCTCTTCTTTGGCGCCACGGAGTGCTGCCTCCTGGCAGCCATGGCCTATGACCGCTATGCAGCCATCTGTGAACCCCTCCGCTACCCACTGCTGCTGAGCCACCGGGTGTGTCTACAGCTAGCTGGGTCGGCGTGGGCCTGTGGGGTGCTGGTGGGGCTGGGCCACACCCCTTTCATCTTCTCTTTGCCCTTCTGCGGCCCCAATACCATCCAGCAGTTCTTCTGTGAGATCCAGCCTGTCCTGCAGCTGGTATGTGGAGACACCTCGCTTAATGAACTGCAGATTATCCTGGCAACAGCCCTCCTCATCCTCTGCCCCTTTGGCCTCATCCTGGGCTCCTACGGGCGTATCCTCGTTACCATCTTCCGGATCCCATCTGTTGCGGGCCGCCGCAAGGCCTTCTCCACCTGCTCCTCCCACCTGATCGTGGTCTCCCTCTTCTATGGCACCGCACTCTTTATCTATATTCGCCCTAAGGCCAGCTACGATCCGGCCACTGACCCTCTGGTGTCCCTCTTCTATGCTGTGGTCACCCCCATCCTCAACCCCATCATCTACAGCCTGCGGAACACAGAGGTCAAAGCTGCCCTAAAGAGAACCATCCAGAAAACGGTGCCTATGGAGATTTGAAAAGGGGGCGATAGTGACTTCTGTGCAGTGCTCTGAGTCAGTCCCAAATACCTAAGGATCAAAGAGTCTCCCTTAAGG----TCTTTCTTCACATTAGGGGAGGGCCAGCCTGTCAGAAAGACAAACTTATCTTTGAAAAGCTACCGTAGTCAAATGCGCTCCTCAGACCCTCACAA--CACATACATATTCTATTCCGCTTTCTGTTGCAAGAAACAAGAAACCCAGGATGGAGGATCAATTTCA--GAAGCAGAGCAAGTTGACAACCAGGGATAAAGTTACAAAATATTATCCTTATCAGACTAGCAAGGTAATAAAATTTTCAGCCACAA s canFam2.chr35 29196208 3077 + 29542582 ATAATAAATTAAAAA---ATCAAAA-AAGAGAAGTTAGGGATAGTTTCCCCCCCCCAAAAAAATGACATCAGCTAC-----TAATGTCAAAAGTATATATATTTCTCTTTTCTATTCTCAGTGCTCTGTGGAATGACTAAA-TAGATAAGTGGTTGAGTGAAT---TCTCAAATATATTGATTACTGAATTACATTGACAGCAAGGAGCTGTATAAACCA-------CACTGTTTGCAGGGATGTTAGAACATCTATAGTAATGGAAA--------------------TAAAATCAAGATGACTGAGCCAGAGATGCTCTGGGTGAGCTGAGGCA----------CCTGGACAT----TCTGAAAC-CTCTGCACAGGTCACAGCACACTGTTTGCAATCTCA----CATACTC----CAACAGATTGTCTG----TGTGGAGAGCTCTCCCC-CTGGAAAGCCACGAGTGCTTGGAGAC-CAGGTCCTCAGAGACTCTTAAGAGA--CACCAAATCTAAGCACACCTCCCTCATGAGGGATCCACAGAGTAAAGACAGAGGATCCTGAGCAGGTCACTAGACGTCATCTGCCTTCAGCACCAGCGATTTCTCCAA--------CGCAAAGATATTATTCAGAGAATGTCTCCTGTAAG-------------CCAGGAAGGTGGGAGAACCAAGGACTTTCCACTTGCAAAG---TATCAGTGTGTGAGCTTGCATTT-TATGACACAGTCTTGAACATGGTTATGGTTTTGCAAAGAAT-TTGAATGTATTCATCTATCGAACCATATCTCTGCTGTTTTATATTTTCATGTTAAATGTGTTTTCACTCTCACTGTTATTTGAAATGATATTTACATTGTATAATA-ATGATTTGCTGCCTTAGATGAACCTAGAATGTGAGATTGTGTTATGTCCATTC--CTGTGCTTGTATTTAGAAATGTGATGTGTTAGTGTGTGAATTGGTGGAGTTTGTGTGTGTGGTTTGGGGATTTGCACACGCGCTTGGGTATAAAGGAGATGCATTTCAGGGTCTGGAAGATGCAGCAATGAGCAACCAAGAAAGACCCT-TCATGTCCTTCCCAAGAATCTTTGAAAACTAGGGAGACCCTCAGTCCTTCAAATA-----ACTGTTTACCTGCCTCTGGGAGCTCAAAA-GAGGTGACTTTTTAAATTTCTTTCCTCCTTTGTGCAAACCATGAAATTTTTCCAAAGGCAAAACAATCAAGGAAAACTGAGAAAGAGAGGGGTCAAGTGGGTCTGGTAGATGAAGAATGTTTAAAAgggcacttggcgggatgagcactgggtgttatgctatatgttggcaaattgaactccaataaataaataaataaataaataaataaataaataaataaataaaaaagagaagaaactcaGGTCAC-AGAGGACATACACTGAGAGGAAAGGAAGGAGAAGCCAC--------AGAGAAGAAAGAAAGGGAAAGACAGGCGCAGAAGGACCCCAGAGGGAGATGAAC-ACAAGGGAAAGCCCCTTGACTTAGAACAGGGTGTTTCTCACTCTGAAGGCAGAGGAATTCTGGCTTTGAGAAGAACAGTGCCAGCGGCAGGGCTCCATGGACAAGGAGAGAAGACCAGACAAGGATGACTCACATGTCCACCCAGAGTAAACTGAGGACAGATCTAAGTGTGTCCTAT-GAAGGGCAGG-AGTCCCAGGACCA-CTGAAG--AGAAAGCCAAGCTCTCAGGGCTCAGTGCTCA-CCTGGCTCCAATGACAGCAGGTCTGACAGGGACATGGCCT-------GTGCTGCCT-----CACGGGCTATGAAACCCTGAAATAAAGGGTATTCCAGCGTCTTCCTGAGCAGGTGCAGCAAGGGGCCACCTCTGTCCATGTCACAGCTCCGCAGCTGCTGTTTCTC--------------TGTCCT------------GTGGAAGTGGCATGAGCACCAACAGCTCCGTGGTGACCGAGTTCATCCTTGTGGGCTTCTCCCATCTGGCCAACCTGCAGGGCTGGCTCTTCACATTCTTCCTTGCCGTCTATCTGCTCACCGTGGCAGGCAACCTCCTCATAGTGCTGCTGGTCTCCACGGATTCTGCTCTCCAGTCCCCCATGTACTTCTTCCTGCGCATGCTGTCGGCCCTGGAGATCAGCTACACATCTGTCACCATGCCCCTGTTGCTGCACCACCTCCTCACAGGCCAGCGCCGCATACCTCGCTCAGGCTGTGCTCTCCAGATGTTCTTTTTCCTTTTCTTCGGTGCCACAGAGTGTTGCCTCCTGGCTGCCATGGCCTATGACCGCTATGCAGCCATCTGCAAACCCCTTCGCTACACACTTCTGCTGAGTCCCCGGGTGTGCCTGCAGCTAGCAGGGCTGGCATGGGCCTGTGGGGCAATGGTGGGCCTGGGCCACACCTCCTTCATCTTCTCCCTGCCCTTCTGTGGCCCCAATGCCATCCCACACTTCTTTTGTGAGATCCAGCCCATCCTGCAGCTGGTATGTGGAGACACCTCACTCAATGAGCTGCAGATTATCCTAGCTGCTGCCCTCATCATCCTCTGTCCCTTCGGCCTCATCCTGGGCTCCTATGGGCATATCCTGGCCACGATTTTCCGGATGCCGTCTGTTGCTGGCCGCCGCAAGGCCTTCTCCACCTGCTCCTCTCACCTGCTGGTGGTCTCCCTCTTCTATGGCACGGCCATCTTCATTTACATCCGCCCTAAGGCCAGTTATAATCCAGCCACTGACCCTGTGCTGTCTCTCTTCTATGCTGTGGTCACCCCCATCCTTAATCCCATCATCTATAGCCTGCGGAATGCGGATGTCAAGGCTGCCCTGAGGCGAACATTCCAGAAAATGAAGCCTGCGGACACTTGACAAGGGGGTGACAATGGAGGCTGT----CACTCCCAGTCACCTCCCATCACC-AAGCATCAAAGG--------TAAGGAAGCATGGTCCTCAC-CTGGGCAGGGGGCAGCCTGTC--AAGAACAGAGTTATCTTGGAAGAA----TGGAGCCAAAC-CACT-TTCAGACCCCTGCAACCCACACACACGCGCTATTCTGCCTTCTGTCCTAAGGAACAGGATACCCAGGATGGATGATCACCTGTGTCGAAGCAGAGCAAGTCAAC-CCTAAGGAC-ATGTTATAAAATGTCCT-CGCACCAGACCACCAAGGTAATGAAACCTCCAGGCACAA a score=7817 s hg19.chr6_ssto_hap7 749589 306 + 4928567 CAATGATCCTTAAAGTCATTTGACATTTGTACGTCCTAGGTAAGGCATTTGTTTCTTGGGTGGTACTACTGGTTAGTACCTTAGCAAACATAATTATACCTAATTAAATCTACTACCAGCTA-AAGACAGATTCCTCAAGAAGTAAGGAGTGGCCACAAAAGTTTCAATGAAGGTAAGTTCTTATGGAAATTCAtatgccgcagaggttaagagaacagattctgatgtcagacagacttaaagtcaagtcttattttttccagctagttagctaagtgatcacaggtgaatgatataatctctctg s canFam2.chr35 29199487 294 + 29542582 CACCGATTCTTAAAGGACTGACACATCTGTA--TCCCAGGTCAAG-ACTGGCCTCCCGTGTGGCCCTGCTGCTCTGTGCACCCATGCACACAGGGACACCTAACTACATCCATCAGCAGGCACAAAGCAACGTCCCCAGGATCTGAGGTTGGGCCAGGGAAGTTTCAATGGAGGTAA-TTCTTATGGGAATCAATATGACTCAGTGGT---AAGAGTAGATTTTCATGT----CAAACTTTGCTTCAAGGCTTGTTTCCTTCACCTGATTCAC-AGGAGATGGCAGG-AAAGGATAtcatctccctg a score=34288 s hg19.chr6_ssto_hap7 750276 2056 + 4928567 atctataaagttgcggtaacaacagagtctaattcattgggtttttgtgaggatttgtagacttgcaaacaatcaagcttaatatctggcacaaaatagtatcttgatagatgttTTTGTTAGCAAGTCAGACAGGTCAGCGCAAAGGCTAATGTTTGGCTCACATGGGGTGACTTTGCT-GGGAAGAGAAGGGTATTCTTGAAATATCAGTGGCATTGGAACCCACAAGAGACCCAGAGGAAGGTGGAAGAAGAGGCTC---TATACATCACTGTTAACAGAAA-----CTGCTACCCAGCACAGATATGAGCCAAAAACTACCAAGACACGGAAGAGCAAATATAAGGGCTATGATATGCAGGAGAGTCAGTGAACTGCAGAACAAATAAGTGGAATAAGCTGAGAGGGTGAATCAAAAACAGCCATCTC-CAAGAGGCAAGTATTTATTAATAATTAAAAGTGCAATCTACATACTTTATATCATT----CCAACACTTTATTCAAATGCAACAGTATTTATTGCAAACTTTCTATGTGCCTATTGCTC-------TTTGGCACTGTGGAGAATAT----CAAGTACATACAGGGTGGTGATTCTGTCCAGAGAGCACTTGCTGT-CCTGTTAAGAAAGCACTGATTCTCATGAAACTATCAGAGAACAGTTTGCAAAGTAAGAAAACACTCAAAATGTAAAGCGAAAAGACAAAGGTGTTACTCCCTGTCCCCACCCCCCAAAAGGGGTTGTGTGGCCTTCCTCA--------------------------------AACTCATTTTATCAATGT--------------GGAAaacctcacaactactgctcttcaat--tgaacaaaactgcaatagcgaggaacagcatttaagaagggttgcctaaaggattgtcaaaacagcttttcctctgataatttaaaatctaaatcttatccccaagctaaagcagatgagcacagagctacacatttaaaatgctgaaatatttccacttcctacatatctccatcaactcatctttcctagaactggtcttgctaaagagtgttttggcattaagccattggtttacattgagaaagattacaagaagcaacattatgaaactcTCAGAGGGATCATTTTTCTCATATCTCAGTGATAGGAATCACTGTATTTTTCCTGTCATATAAGCAATAACATTTCCTCAcagttttatggaagtacaattggcatatgacaaattgtacatgtttaagtgtgcaatttgataagttttgacccatgtatgcacc-atgacattataggcgcaatcacgaaatgaacatatcc-agcccccgtgct-ccctcacactccattgtaatctctctctttcacccctccctgcactcctcattcccaagcaacctctgatctgcttcccagcactat-----atttttcttttttcagagttttatataaatgaaattataaaatatgtactctttttagtctgactta----------------tatttggagatttggccatgttgtggtgtgtacagcagc-cattccttttcatttctgagtgatactccattgtatagatatgacataatttgttcatccattcacctgctgaaggaaatttgggttgttttcacaattttttattcattcacctgctaaaggaagttcaggttgtttccagtttttggttcata-gaatgaaggttctatgaacatttgtgtacaaagtctttgtatgctt-tcatttctctggggtaaatacatagatgtgaaatggctgcatcacatgggaagtgtatgtttaattttttaagaaattAAGTAATCACTTTT-CCTCTTAACATGACAGCTAGCAAGTTTCCACCTGAATTTGTAACTCATCTCCAGGAAATGTGCAATTCCTCACGATATATTTTTGAGAT----ATCTAGTTTCTGGTCTCACTTGCTGTTGTTGTTGTTGTTCTATTCTACCTTTTTCTTTGTCCAGTCTCTCTCATCCTTATTTTCTGTACATTTATGTAACCCAGCACAT--TAGTCTTTCTGGAGCAAGACTTAGAGCCACCAATCAGTAATTAAAAAAAAAAAAATAGACAGGGGAAAGTATTGAAT--GGAAAATCCCTGGTTa s canFam2.chr35 29199781 1913 + 29542582 gtctataaagtctggacaataatacagtctatttctttgggggtttctgagtatttatagactcataaagtatcaagcttactctctggcacaaaacagtggctggataaatgttTTTAT--GCAGGTCAGACAGGTGGGCACAGACGACACTATCCACCCCATGC-AGGTGCTTCTGCTGGGGGAGAGAAGGGTGTTCTTAGGATGTC--TGGTGCTGGGAGC--CAAGAGACCC---------------------CCCACACACACACCATGGCT-GCGGACACTGTCCTGCAACCCAATGCAGACCC--ACCAGAGGCCAGCAGGACACCGGAGAGCCAGTCTGAGGGCAAAG---CGCAGAGGCATCTGTGCAC-GCAGAATCCAGATCTGGGACTAGCTGGG--------TC---ACCAGATAGGTCTCAGGGGGCAAGTACCCACCAGCAAATACAGACATGATCCCCCTCCTTTTTCCTGTTGTTCCCAGCACTTCATTCAGTCTGACAAGCACCTCCCAAAGGCCTCCC-CGTGCCCCTGGCTCCACCTGGCTCTGCGCTGTGTGGGGTTTGTGCCTAGGATGTGCTGGGT-GTGGATCTGCCCAGAG---GCTTGCTGTGTGTGGGGAGCTAATGCTGATTCTCAGGACCCCACTGGAGAACAATGTG---AGTGTCCACACCCTCACAG-----------------------------CCTCCCCTCAGCCCCACAGAGCATTAGGGTGGCCCTCTCCAGGGGCTGTAAACAGTCTGGCCCCTTCATGTTCAACCCAGTCCCAACATGTGCCTACACAACCCAGCACAACCCCAACACTGCCACTCCTCTGTGCTTATCAAGATCCTTTCTCAGAGGGATGACCTTCAGGAAGGGATG----AATGGTAGT-----CAGCCTTTATTCTGAG-----------TTGAGGCTGTCCACACAC-GGAGCAGAGCAGCA-GGAGCAGCACACCTCACATGT---GCTCTTTCCACCCACC-CATGACACCCTCCACAGAGC---CCTCGAGTGAGT----------GGTGCTCCAGCGCTCTGCCACCGCTTTACAAGAGGGATGCCCCCTAGAAACAACATCATGAAACTCTCA---GGAAACTGTTCATCACATCTCAGTGATGGGGA-CACTGTCCTT---CTGTCACGTGAAC-----TCTTTCCTGacagcttaatgaggatacgattgacat-----aacttgcatatgtttcagcatac---ctgctaaatttggacacacgtacatacctgcaaaaccaccaccacagtcatgctatgaatgtttctgagccatcaaaccgtccttgtgccccaatgc-atctctcctgcccacccctcctcacattccccatttcacag-aacctatggtcacatttctgggacgatcaatgagttggtctttcttagagttttctataagtggaaacacaaattatgcagccttttgggactggcttcctcagttcagcataattattttgagatgcatccatgtcgt-gtgtat-caacagctcactcc------ttgctgagtggtattccattgtgcagatatatcaccatttgcttatctgttaatcgattgatggaaattgg-----------------------------------------------ggttatttccagtttcgggttattacaaataaagctgctctgaaagtctgcatgcacag-ctttgtattctcgccccctctcttgggtaaatgtctgggtatggaatggcaggatcatggagaaggtacacatttaa-cttttaataaattaagaaatcacttttcCCTCTTTATATGACAACTAGTAA--------CCAGAGTTGTGACCCATTTCTGGGAAATGTACATCTCCTCACAGTTTGCTTTTGAAATGCTCACCTGGCTTCTGACATCAC------------------CTCCATCCCATCACT---------CACTCTACCTTGGCCTCATTTTGTGCATA-TCATGTAA---GGCACATGACAGTGTTTCTGGAATGAGGCCCAAAGCCCTGAGCCTGCACATCATAGCA-------------GGAACCCTGCTGAATGAGGAAAACTCTGGCTTA a score=10352 s hg19.chr6_ssto_hap7 752717 327 + 4928567 gggttgtgatctctactcc----gttactaaaactttacaggacctagagcaaactctttgcatcatctttttggttttcaatttcatcatcaataaacataaaggctaaatcaaatgagctctggattgagttccagatccactattctgtgcttATTTGTCCCAAGGACTATATGCTTCTTATAGCTGATACTCTCACAAAGAACCAGAAGGAAGATTGCAGCAAATGCTCTTTCTCCACCATAGATAGCTACCAAGGGACCTTGAACTACATTAATCCTGGGC-AATATAAGCACAGTCATTGGTTTTCAAGACAAACACCACTCAAAA s canFam2.chr35 29201700 317 + 29542582 GGATTGGGCCCACTACCCCCTCTGCCACAGAAGACTCACAAGGCCTGGCACTTACCCCTGCCATCATTCCTCCAGCCTCAA----CAGTGTCAGTAAGCAGTGGGACTGAATCAAATGAGCCCTCTTCTGGGTT-CAGCTTCACCATTCTATGCCTATTTCCCTGAAGCACTTTCTGTTCCTTGTGGCTGATTTTCTTACAAAGAACCAGA---AAGATTATGGTGGATACTCCTTCCCCACC----ATCACTACTAA-TGATGTTGAGCTACATTAATCCTAGACAAATACAAGCACAGCCACTTGGTTGC--TGCAGATACCAGTCAAAA a score=19690 s hg19.chr6_ssto_hap7 758514 351 + 4928567 CTGTCCCACAGCCCCAGCTGGTAGTTTGGCTTCTCCC-ATGCAGCCTCCCTCTTAGGCCCAACCATAGTATCAAAACTCTCAACAGCTATCCCAGACCTGCTGGGTCATCCCTCACAACAGAAACTCAGTGTTTGGGTAGAGTGGAGAGGCTTGTAGTGATCTTAACTTTCCTGAGAATGCTCAGCCTAATTATGTCCCGGGTATAGAATCCAACCTCATCCTTGAAAAACTGAAAGCTGTCCACAGCTATAATCCTAAAATATTTTATTGGAATCTTAAAAGCAGACATATGTTCAT-------------------TACAACATCCACTGCTCTGTTAAGTACTCCATCTGGCATGGCACAGAATATGGc s canFam2.chr24 785287 371 - 50763139 CTGCCCCACAGCCTCAGCCAGTTGTGCAGCCTCTTCCTACTCAGCCTCCCCCTTTGGCCCAACCACAGTATCCAAGCCCTCAGCAGCCACCCCAAACCCGCTGGGTCGCCCCTCGTAATAGAAATGCGGCATTTGGGCAGAGCGGAGGGACCAGCAGTGATGGTAACTCGCCTGGAAATACCCAGCCTAGTTCTGCCCCCACCGTGGAGTCCCACCCGGTTCTTGAAAAACTGAAAGCTGCCCACAGCTATAACCCTAAAGAGTTTGATTGGAATCTTAAAAGTGGACGCGTGTTCATAATAAAAAGCTACTCTGAGGACGACATCCACCGCTCCATTAAGTACTCCATCTGGTGCAGCACAGAGCACGGC a score=1448 s hg19.chr6_ssto_hap7 760985 362 + 4928567 ttaaatgaaggcaa-aataaagccatc---tgaaattaaaaagaagctg--------agaaaatttgttgccagaagatactcactaaaagaataaaaaaggataaaggaagtt-----------------tttcaggctatagagaaattataata--tttggagtttcaaatcta-tgagaaggaacgaaaaactttcaagattggaaacataaaagtgtat-ataaaagttatcttcttccttttcttaaattcattaaaagtctaaaaataatgataatatat--tacaagggttgtaacatatgtaaagtaaaacacggcaatagctgcacaaagaatgggaggaatta-----------taactaattttatt--attatcagatttttatattctatgttaaa s canFam2.chr27 42015915 369 - 48908698 ttgaaataagacaatagtaaatatatcaagtaaaattaaaagaaagctagtatcactatacaaattgttggcaaaatagactttaaggcaaaagagttagggataaagaaggtcatttttatttagaaaagcttcaactcaccaagaagctagaacaattctggacttctgagcctaataaataggacccagataatattaag----gaaaaatagaattgtacgacaaatgtta----------------gaactccttta--------------tgatagtagagaatacaactatttttattcttaccaaatcaaaca-gatgaaaacttagtaaagatttgggatatttgcgcaacataattagccagcttgatttaatagccaaatccatgcactc------aaa a score=19863 s hg19.chr6_ssto_hap7 761541 1057 + 4928567 ccagatatggtgaattaaagaggacagcaaatccttccttcctccacctcacaaa-taaattataaaaccaga-aaaattgtcaaaaacaatcatttcaggtgtctggaaat-aaaccaaggcaaataataaattgagaaccactttttcataaagcagtgctagaagcttaggtaagaa-TCATAGGTAACTGTGCCTGTCCT---GTGAAAAGTGCTCCAGTAC------TACTCCAACTTAGTTGATG------GTAGTTTTGCCAGT-CAGGAATGGCCATGAAAATCAACAATTACACTATTAAAGAGGGTTGAGATGATTTGGAAC-AAAGATAAAAACTCATGCCTAGGGTTTATGTCAGT-AAAAGTAACAAACTCAATCGT--------------GTTTAAGGCTCAGGTATCCAGAGGTTACAGTTTTAAT-GAGGCGAACAGTGAACCTATCAGAAATGTAATGGGAAGATGCTGGGAATTAGATAGCTATAGAAGAATTAGATAAGATCTCTACACATTCCTGGCTGACTGGG------AAACTACAGGTATGTACAGAAGAAACATGAGAGAAaccagcatgaagtaaaatccaagacaaacttaaaagctctctgaatt-tgaatatggt-cccagcacaaaggcagatgcattagcagagaatggaagccttttgaaatcaaaagtatttgaccaaaaccttcacc--caatcattgactgaacactaagctGTGCAAGAACAAGGGAAACTTCTGGGATCCAAG----------ATTTTAAAATATGAATTTTTAAGAGCTAGGTTGAGACCATGGAAGCCATAAATGGTGGAAGATACACAGTCCACAGATTATGTCCAATAATGTTAACAAAATAATTCTTAGAAAAAAATAA---------------GAATATAAACTTGT--CAATATAGTATCTAAAatg----------------agacatgcaaagaaacaggaaagtataatcaagtcttagagaaaagactgcagttaatggaaactgactgtaagtgggac-tgctgttgaatttagcaaacagagat-tcaaaacatctaata----taaatagttaaattaaaaccatttttaaagaaTTCATGGACAATATAGT s canFam2.chr27 35445686 1118 + 48908698 CCAGCTATTGTTgtataaagaggtcaatgaaacct------ctctgcaaaacaaaatcaaatataaaactgtataaaaatttcaataacaatcatttcaggactatggaaattgaacaaaagcagttaatag-ttgagaagtattgatt---gaaatacttctcaa--tttgtgtaagaaattgtgggaatatgcagctatttttgggttggagctgcttccatgcctcccctagcccaggctggttggcgaaagctgtagttttatgaggatagtgctggccaagaacactgagcAGTTTATTCT--GAGTGGGCAGACTCAACTTGGGACTGGAGACAAAAACCCATGGCTT-------TGTCATTTAAAAGTGGCAAGCTCTGTAGAAAACAAATGGGAAAGTCTATAGCTTTGTTGGCCTGAGGCTCTGATTCTATTTGGGGCAAGTGGCAGGCCAGCTAGTAATTTAATGGGGAGATTTTGGAAGTGAGAGAGCCATAAAAGAACTCAATATGCTTTCCACACATTCCTGGCTGACTTGGGTTTGTGAACTATGCTCATGGGCAGAGGGGACCAAAAAGAATCTCATGgaaaataaaagcccaggcacacttgagaactacctgagctatgaatgtgttccccaatctacacacagattcattggcagaggttggaagggcttttggacttgaagtatttaagcaaa--cttcaacagaaattgatagctgatcactaagctgt---aacacaggggtgagccctcaaaggtaagctgaaaaataattttaaaa-acacaatttcaaaatctaagtagaaacagtaggagccacacattgtgg--gaaacagattctgcagtttaaatgcattcaagttacctttaaaaatccttcagaaaaatcactcaatagataaagcaaattcagaattgttacagtatcttatctaaaatgtccagtttttaacaaaaaatatg---agaaacaggaaagcaaaattcatactcagggcaacaagtg--gtcaatagaaactgaatctgagtgggccaaaattttgaatttaacagataaagacatcaaagcagctattatgtttggagaattaaa-agaaaccaggtacaacaaagtaaaggaaaatattgt a score=64000 s hg19.chr6_ssto_hap7 769496 1544 + 4928567 GAGAAATCTCTTTGTTAATTCTACACTCTGCCTCTGATTGACACCTCTGCAAACAAAGATAAAGTAGATAAAA-------------CATGAATAATTCCAGGAAACTTATGCCCCAGAATACAGAA-----TAATTTTGCATACATATGAATAGTAGGGCAATTC--TATCAAA---TGATTCTTTTCTAATTCTTT------ATGGATGTACATAATGAAATATTCAGAACTACCACAACATTTAGAATA-AGATAGAGCCTAACAATTTATTGTTGAATTAATGAAGATCGGTTAATTAATCCATGTTTTACATCAGCTTTCTTTGCCCTCAACCAGGAAGTCAGAGGCACCAATGTGAGGTTCCACCTGCTTTCCAGCACATTCTTGGTTTCCTCACTTCTGCTAGACAACGTTTGATCAGAAGGAACAGGGAACGAGAAGGAGCTGCTGGATG-----ACGATAAGCCTGGGAAAGGGAGGCTGGGTGAGCAGAGACAGAAAAGAA-ACACCTACCTGCTGTGACCTCACAAACACCCAGGCTGAGTTTTGATAAGACAGGTTGAATCACACTGGGGTGACAGCCTCATCCCTCCAGGTACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTTGTGGTTGTCTTCACTTCCTACC-------TCTTGACCCTGGTGGGCAACACACTCATCATCCTGCTGTCTGTACTGTACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCTGACCTCTCCTTCTTGGACCTCTGCTTTACCACAAGTTGTGTCCCCCAGATGCTGGTCAACCTCTGGGGCCCAAAGAAGACCATCAGCTTCCTGGGATGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGGACCACTGAGTGCATCCTCCTGACAGTGATGGCCTTTGACCGATACGTGGCTGTCTGCCAGCCCCTCCACTATGCCACCATCATCCACCC-CCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTTATGAGTCTGGTTCAATCGATAGTCCAGACACCATCCACCCTCCACTTGCCCTTCTGTCCCCACCAGCAGATAGATGACTTTTTATGTGAGGTCCCATCTCTGATTCGACTCTCCTGTGGAGATACCTCCTACAATGAAATCCAGTTGGCTGTGTCCAGTGTCATCTTCGTGGTTGTGCCTCTCAGCCTCATCCTTGCCTCTTATGGAGCCACTGCCCAGGCAGTGCTGAGGATTAACTCTGCCACAGCATGGAGAAAGGCCTTTGGGACCTGCTCCTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCCGTATGCCCAAGGGAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTTAACCCTCTCGTATACACCCTGAGGAACAAGGAGATAAAGCGAGCACTCAGGAGGTTACTAGGGAAGGAAAGAGACTCCAGGGAAAGCTGGAGAGCTGCTTAATATACTTTC s canFam2.chr35 29221450 1540 + 29542582 GGAAAACCTCTCCATAGACACAACATTCTGTCTCAAATCAGGTCCCTTGCAAAAAAAAAAAAAAAAGGCACAAAGAATACATGTAGTATGAATAGCTCTCCAAAATTCATCTGACA-AATAGAGAAATGATCAACTCTACAGAGATAGCTACAACCTAAAAATCCATTATAAAAATACGTTACTTTGCTGGTTCTTCCAACAAATGCATAGGGACAATACAACACTTGGAAC------AGCACTCAGAACACAGACGCATCC--ACCATGTGGTCCTGAAGTAAT------CAGCTCAGTACTGCATGCTTTCCAGTAGCCTCCGCTGTGCTCAGCCCATCAGCCTGAGGCCCCCGTGTCCAGCACTGCCTGTCCCCCAGCAAGTCCTGCTGCCCCCAAAGCCTGCTGGACAGCACT-GCCCAGGAGGAACATGAA--GGGAAGGAGGTGCAGAGTGTGGAGGTGGAGTGCCTGGTAAAGGA---CACGGTG----GAGACAGAAAAGGAGATATGTACCTGGGGTGAGCTGACCAGTACCAGGG--GAGGTTTGGGACAACAGCTCAGGACACACTGC--------CCTCATCCTTCCAGGCTGGGGCAGGAAAA-----TGGGCAACCAGAACTCCCCTGGGGGCTTCCTCCTTCTGGACTTCTCTGAACACCCAGGGCTAGAGAGAATCCTTTTTGTGGTTGTCCTCACTTCCTGTTGTGTTGTTCCTCACTCTGGTGAGCAACACCCTCATCATCCTGCTGTCTGTGCGGGACCCAAGGCTCCACTCCTCGATGTACTTTTTCCTCTCCAACCTGTCCTTCTTGGACCTGCGCTTCACCACAAGCTCCGTCCCCCAGCTGCTGGTCAACCTCTGCAGCCCAAAGA---CCACCAGCTTCCTTGGCTGCTCTGTTCAGCTCTTCATCTTTCTGTTCCTGGGGACCACAGAGTGCATCCACCTGAACATGATGGCCTTTGACCTCTACATGGCCATATGCCAGCCTCTGCACTATACCATCATCATGCCCCCGTTGCCTGTGCCGGCAGCTGGCGTCCATGGCCTGGGCCATCAGTCTGCTGGAGTCGGTGGTCCAGACACCACCCACTCTCCACCTGCCCTTGTGTCCCCACCAGCAGGGGGATGAGTTCGTGTGTGAGGTCCCAGCT-TAATCAGACTGTCTGGTGGGGACACCACCTACAACCAGATCCAGATGGCTGTCACCAGCATCCTCATCCTGCTCATGCCCATCGGCCTCATCCTGGTCTCTTACTGTGCCATTGCCCAGGCAGTGCTGAGGATTAACTCAGCCAACCGGTGGAGGAAAGCATGTGGGACCTGCTTCTCCCCTCTCGTGGTGGTCACCCTCTTCTACAGATCAGCCATCGCTGTCTACCTCCAGCCCCAGAATGCCTATGCCC-AGAAAGGGGCATAGTTCTTCTGTCTGTTCTGTGCCGTGGGCACTGCAGCAATGAACC--CTCATTTACACCCTGAAAACCAAGGAGGTAAAGAGGGCTGTCAGAAGGTCGCTGGGGAAAGACAGGGATACATGGGAGAGCTG--AGCCCGCTCCGTGTGCTTTC a score=1977 s hg19.chr6_ssto_hap7 771114 191 + 4928567 TGAGCCACTGTGGTGGGTCACAGT-GTGGCTATGTTATCTATgagagggagaatgagaaagagagggaca-----gagagataaaagaaattgggtgagaggagatagGTAGCTCCATAAGGCACACAAATTCAAAT-----ATTATCATTCCTATCACTGTCCATTCTTAATATTTCTATCCTCCATTCTGTTCTTTTTAC s canFam2.chr14 5565153 175 + 63938239 GGAGACTTTGTGG------ACAGTGGTAGCCATGCTCTCAATGAAGGATTAAACTGGAGAG-TAGGTTCAATTGTGCAGGATGAAAAAAA---------AAGAGAGAGAAAGATCAATA---TAAAAAAATTCATCCTCTTGATCTTCATTCC--------TTCATCTTTCTTATACCTTCCCTTTATTCTGTCCTGTTCAC a score=14217 s hg19.chr6_ssto_hap7 772847 443 + 4928567 GAACATGAGCCAGAAGAAAATGAACTGCTTTTCCTTA-AGCATCTCTCTACCCCTGGGTCACCTCCAGTGGAGTGGTGTGTCAAGAAATGTAATTTGTCCTTTCTGATGCCATAATCTACCATATTTTTTTAAATT-------------------AAGTCATG---------------------------------------------------------------------------CCAGGAGGAGATTTCTCTGCTCCTCATCACATGTTTCCACCAGAAACATGGGCAGCTCCGCATC-TTGGGCTTCACCACCTTTAAGGTGAGGTGGATGGTCTTCTTCTTGGAAATTTCATAAGACGATAGCATTTTCTTGGGCTTTGGGGTCTTAAAGCCCAGCAGAAAAACCAAGTCCTGCATGGGAACCTTGGTCTTAGACCAGAGCTGTTCACCTACCTTCTTCACTCCATT-------TTAGCAGCCAATGTCATTAATTCCCATTCCTCACAATTGACACTCATTTAGGCaattctatataaa s canFam2.chr35 90498 540 - 29542582 GAATAAGAGCTAGCAGTAA--GCTCTTCTGCTCCTTACATGAGCCATCCCTGGCGGGCCCACCCCCAATGTGGTAGGCTGTCAAGAAGAGTTCGTTGCCCCTTCTGATGCCATAATCCGCCATGATCCTCCCATCTTCCAGCCTCTTGCCATTGCAAGTCACAATCTGTTTCTTAGGCATTATAGCGGTCTTAGTCTCTATTATCATTTTACCTGGGCCAATGAGCTGGACTTTTGCACCTGGAAGAGGTGCCTCT-CCCTTCATCATCTGACTCCACCAGAACCAAGGGCAACTCCTCATCACTGGGTTTCACCACCTTCAGAGTGAGGTGGATGGTCATCTCCTTGTCAATGCCA---GATGACAGTTTCCTCTGGGGATTTAGAGTCTTGGAGCCCAGCAGAAGTACCTGGTACTGCACGGCAACCTTGGTCTTAGCCCAGACATGTTCACTGACCTTCTTCACTCTGTCCCTCTCATTAACAGTGAAGGTCGTTGATGTGCCTTCCTCAGAATGGACTGTCACCTGGGCAATCATGGACAAA a score=4502 s hg19.chr6_ssto_hap7 780417 677 + 4928567 cacagggagaaggcggccatctcaagtcaaagagggaggcctcaggggaagcccaccctgctgatacattgatcttgaacttccaagctccaggactctgagaaaataaatatctgctgtttgtagcctaa--tctatggcattttgttagaacaaaacacgctgactaaagacaGGCAGCCCGGATCAGCCCTTCTGTGCTCTAGGGCCAGGGTTTCTGCCATTCACTTATCAAAGGACAACATCAAATTATGTAAATCAAACTCTGTTTCAAATTCTAGTGTGATGTGAAACAAACTAATAGGAGATATGAACATGTCCCTATCAATTTTGTCATTTACACTAGGCAGAAATCAATATGATCCAAGTAACAGCATTTAAAGAATTGCTGTAATCTAAACATCTC-AGAATTGCTTTAG--AATGTATCACATTGAATATCTAAAATAAGAG-------AATGTACATTGCTTACCAGTATCACTGGCACA-TTTACAAACCTGAGCAAGTTTTCGG-CAACAGAGAAAACAGTGTGAATTTCACATAACAGTCATAGTATTATACAAGTGACATTTTCCAAGTGAGT----AAAAAACTGACAAATCAATTACAAGAACACTGGGAACAATCTCCAAAGACGTGTTCGTCGAATTCTAGTTAGAATATGGTTGGGAAGCCTCAAGAAGGCAGA s canFam2.chr18 50184524 601 + 58872314 cacagtaagagagcagctgcctgtgtgccagggaggggccctcagcaggaatgtg---ggctggctcccggatgtaggacctcctgcctccagaaccttgagaaaatcaatctctggtg---gaagtctcacatctgtgggactt-GTCAG------------TGAC-----AGTGGCAGT------------------------GGATCGGGGATTCTGCTGTGCGGTCATCCAACAGCAGCACCACCACGTGTGAGTCCAGATCTGTCACACGCGTTGGGTTCACAGAAAGCTCATGAGTAGGACACGCTGCCCTGCCCTGCTCTGTCTGG--GTCTGCGAACGGCTGAGA-----------------ACCGCA-----GGGCTTGTTGTGATCCAAACATCCCCAGAGCTGCCTCGGTGCACGGATC--------CATCCTAGGAAAGAGGGGACGGAGGGCACACGGCTCGCTGGCGAGATCCGCACAGTTTACAAAC--GGGCTGACTTTCGGGCAACCAGGAAAAC----TGGAATTCACGTGCCTG-CGTGGCGT-----GTGTTACGTTTTCCCACCAGGTTTTACAGATACTG-TAGATCCATGACAGAAGCTC-GGGCGGTGTCCCCGAGGACACGATGGTGAAATTCCGGCTCTAAGGTGGATGTCCTGCGGCAGGGACGCAGA a score=7219 s hg19.chr6_ssto_hap7 781187 1025 + 4928567 AGGGCATTTTGCTACTTGCTGGGAATTTGCTAGGGTAGGAGGAAGGT---------GTGGCCTCTGCCCTACTGGGGCTTCAAGTGCAAATGAGGCAGGAGTACAA--TAAACTGATAACAACACACAACACAGAATACATAGAAAATAATTATAGACAATTATCTTCACATTAAAAGAAACAAACCTTTTAGAGAAGAGTCAAAAAGGGGTGGAGATTTAAATGGGGTGGTCTGGACAAACATCTTTAAGGAGTGAAGGGTGAAAAAGAGTAAAATGTACAGATAGTGTTGAGGGAGTGCTCTAAGCAGGGAAGGGAGAAAGGGACCTTGCAAGGTTGGGCGCGAGTCTGGTGCAAACAAGGGAGAGAGTGAATCCTGTGTGAGGATGTCA-TGGGACAAGGTCAAATGGTGCACCTGAGGACA-ACTCAGGGGGTGGACACCATCCTGAAATCTAAGAGTTACGCTGG---CTGGGGTGCAATTGA---ACAAATGAAGCAGGGTGATGTG-----CTGCTGTGATGGCTATAGAGCATTGACGGG---------------ATGGAGCT-GGGGCTGGTCAGGGGCTCTCATTAAGGTTCTGACCATGGTGGGTGCCGGGCAACACCCTGGTCAGGGTGGGGAAGAATGCATGACATTCTGCAGGGTGGGATTCCTGTGAAGAAGCACAGGCGCTAGATTGTGTGATGAGTCTGGGAAAAACACAGAGAGTAGCCTGTGCGTGGAACCTGGAATGAGCAGAGTGAAACAGCTTGGAGAAACCAGGCTGTAGGCCAGACTGCCAGCGT-TAGATCTCTCCACAGTGAGCAACGCCAGAAACAACTT------------GTTATGGCACTCTTACTGAATCGCTTTCCTGGCTTT-----TGTAGGAAGGGATGGATGGAAACTTGAGGCCATAATGGTGGAGGAACATCAGGATCATGAATCAGTCTCTGCCCAGGGGTCCCCAGGAAGGATGGACTGGGGTGACAGAGGACAGAACTCCGAGCAAGGTGACTGAATAAGGATGAATGACACTTGTC-ACTCTCAGAAATATGGAGCTTGCAG s canFam2.chr18 50185197 914 + 58872314 GGGGCATTGCGCTGCCTGGTGGTC-CCTGCCCGGT---------GGTCCCTGCCCGGTGGTCCCTGCC-TGCTGTGGCTTCAAGTCCATGTGGTGAAGAACCATGACCTAAACAGATCCTAATACACAATACATAATAAAAGTAAGATAATTGTA-----------------TTAAGGAATCAGG--TGACAAGGCGGGGCGCAACAGGAGCGGGCACT-AGGTGCAATGCTCCAAAGAAGCGTCTCTGAGGAGGGAATGGTGAACA-GAGTGAGGTTTGCACCCAGCGCCGAGGGA----------CAGGGCAGGGGG---------TTGCAGGGCT----------------CAAGCAGGGAAGGGGTTCA---CTGTG-------GCCAAGGGGACAAGGTCGGA-GGCACACCCGGGGCCACGCTTGGGGCACTGACACCACCCTGAAGATTATAGGCTCCCCTGGGACCTGGG---CAATTGAGCCACGGCTGGGGCTGGGGGCTGGGGCATCCGGCTGAGTTAGAGACAGAGGACTGGTGGGGGGACCGTGGCAAGGATGGAGCCCGAGGCAGGTCACAGGGACGGGCTGATGACATGCTGCTAGTGGTCACGATGGAAGAAGTAGG-CAAACCTGGGAAGGCTCCAGGGCAGTGAGTGTGGTGGA-------CGGAGAGCCGGGGAGGGGAGGTGGAGGGAC----------------CACAGAGCTGCCTGTGTCTGGAGCCCAGA-----CAAGGTG---------GGGGC-----GGCTACTGAGCACACTGCTCGGGCCTGGATTTCAGCCCCCTAAAC-----CAGGATCAGCTTCCTTCAGATGCTGTCTTGGGACTATCCCCAAAT----TTCCAGGGAGGGGGAATATGGGAGGGGAGGCTTGGAGTGTCGGGGAGAT----GTGGAGGT------GGGTCAT--------------CTGGGGG---ACAGGAGTGACAAGCAGGAGCAATGGAGGCCAGAAGTGTGGACAGAG-----GGAGGAGGATGCAGGACCCTTGTCCATTCTCAGA-----GGATCCTCCAG a score=25682 s hg19.chr6_ssto_hap7 783097 1258 + 4928567 TGGGAATTGAGAATAATGGGCTATCAACAGAAGCAAAGTAATTTTGTCTTGAATTCAGTCAGAAATCTGGTTACTCTGAAAATACACAAAGGTAATAAATAATCTCAAGAACATTCACCCTGCTCCTTGGAGGATCCAGCATGTTTTCCAGACATGATCCCTTTTACAGCCTTGTGCATAGGCAGTCCCTGCCTTTGTGGAGGAGCTGAGCCCCCTAGAAGAGCAGTTTGTTTCCAGCTGTGAGGCTGAAATCTGCCCTGGGATCGGGGGCCTGAAACGCCTCATTTTATCCATGCCTCCATCTCACTCAACAAAGCCCTCTGAAAAACAGCCTTTAGGGACTCCCTGTGCCTCTTCCTGTAGAGTTACTCAGCCAAGAAGTAGATGACTAGGTGAGGCATGCTGACCACAATGGACAGTAGCAACAGGAGGTCAAAGGCAAGGGTCAGAAACTTTCCTGGCAGGCACACAAGGACAACTAAGGGCAGGACCCAAAGGAAGAAGCTGATGATCACAAAGCAGACAACATGATAGGTCCTGATGGGGGAACACCACTGGGGACAGCACAGACCCCAGATGATCAGGATCAGCTTGGACATGCCCATTACAAAGCAAATAAGTACATGACATGTCA-TAAAGCCTCATGAAATTGGTCACATGCCAAGCACTTCTCCCAGTACTCACAGACCTGGCTAACTGCATACAAAGAAAGGGCCAGGGCCCACCTCA------CCATGGCA---GAGGTGTGCTCTGGGCGGTGGCAGCACCAGGTGGGACAGAGGGCACAGAGAAAGCTCTCAATACTCATGGCCACCAGGAGACAGAGACCCACTGTGTCGGAGAAATAGGAGACAGGATCCAGAAACACAGCCACCTGCAATGCCGCCTGGTGATACAGCATGAGGATTTTCTCCAGCAGGATCACAGTTACACAGGAGAGGTTGACCATATCAACAGTGGCCAGGTTAAGGATGTAGGTCACATAGGGGCTGCTCCAGACCTGTGAGTAGAGAAGCCAGCAGATCACATCATTGCCTACCAGTCCACAGAGGGCCACCAGCACTGTCAGGGAGAAGACCACCTGCCTGTCCACCAACCACTCACCTCCCGTATGGCTCATGTTCACATGTCCTGAGGTCTCAGT------CTCATTGTCCCAATCCAGCTTTCCAGAGAGGGTTGCGAGAAGCTAGGCTATGGTGGGCTACCTTTGCTGCCTGCGCACATCCTGCAAAAACAAAGGC-TGGTAACATACCAGGTCTGG s canFam2.chr18 50186111 1104 + 58872314 CGGGACCTGGGAC--AGGGGTCATC--CAGAGATGAGGCGGCTGTG------------------ACCTGGTGGCTCTGAGGGCACACACAGGTG-TGGTTGGTCAGAAGAGCGTCCACCC--------------------------------------------------------CATAG-----------CTTCGTGATGGGGCTGACCC--------------------TGCAGCTGGCAGACTGGA----GCCCTGAG-----GGTCC-------CCCCACCTTAC----ATCTGCATCTCACTCAGCAGGGCCCACTGGAGGAGGGTTCTCAGGGAGCCTGGGCGCTGCCTCTTGCAGAGGTGCAGAGCCAGGAAATAAAGGGCCAGGTGAGCCGTAATGGCCACACTGGGCAGGAGCAAGAGGAGGTCAAAGACCAGGGCCAGGGACTCTTGTGGCAGGAGTATCACGAC--CTCGGGGTGGACCCGCGAGGAAGATGGTGATGACCACCGTGCAGATGGC-TAGTTGGCCCTGGTAAGGGAGCAC---TGGGG----------CACCAGCAGGCCAGAGTCAGGCTGGACAAACATGTCCCCAGGCCCAGGAGCAGGTGAAGTGCCAGCAGTGCTGCACAGAGCTGGGTGCACACGGCGTCTCTGTCCAGGTGGTCACAGGCCTTGATCCCGGTGTGCAGACAGAGGGCCGGGGCCCAGCTCAGGGTGCTCGTGGCCTCTGAGGTGCACTGCGGGCGGCGGCC---CCATGGGGGAAAGTGGGTGTCCACGTTGCGCTCGCTGCCCATGGCCGCCAGGAGATAGG--CCCGCCGGGTTGGAGAAACTGGTGACCGTGTCCAGCACCATGGCCGTGGGCCATGTCCCCTGGGGGTGCTGCTCCAGGGTTTTCTCCGATGGGACGAAAGCCAAGCAGCAGAGGCCCAGGCTATTGGCAATGGCCAGGTGAAGGCAGTAGGTGGCTTAGGGGCTGCTGGGGACATGTGGGCGCAGAAGCCAGCACAGCATGCCATTGCC-ACCAACCCGCAGAGGACTGCCAGCGCCGCGATGGGGAGGACGAACTCTGAGGACAAGAAACATCTGCTCCCTGT----CTCATCT--GCAGCTCTGGAGACAGCAGTTGGGGCCTCCCCGTGGGGATCCAGGTCCTAGGAGGGGGTGGTGCTGAGTTGGTTCATGGAGGG-------------CTGGATGCACCCTGAGAAGACAAAGGTGTGGTACCTTAGCAAGTCTGG a score=8805 s hg19.chr6_ssto_hap7 787875 322 + 4928567 ACTTGGTATCACAGA------GGCCAACCTCCTGAGAGATCAAAGTTCTGCCCTCATGTCAGGAAGCTCTCTAAGCATATCTGCTTTGAACTGGGTCTTGACAAGCAGTTATCAAGTTCCCTGTGTCCCTTAGGTCTTCCTGTACCAGGGCCACTTGCATATCAGAGCCCAGGCCTTTAACTGAAGCATCTTTATCTCAACATCTCACGATATCCCCCAATCCTGTCTGA--CTCTATTACTCTGTCCTTAAGAACTGTCCCCTGAAACAAAGAAGAATCTTTAAGAGAAGTCA--GTCTCTCCACTTTAATGCATCTCCCAGACTGAGGTC s canFam2.chr18 50188201 312 + 58872314 ACCTGGTGCCAGAGCCTTGGTGGCCGGTATCCCGAGAGGTCACAGTCCTGCCCTGGAGCTGGGGAGTGCTCTAGGCCCA-------------GGGTCCTGCCGGAGAGTGATCAAGGTCCCTGTGACCCCTGGGTCTTCCTGTGGGGAGGCCACTTGCAAATCCCGATGTGGGGCTTTATCTGAGACTTC-CTATCTCCACCTCTCGTGATGCCTC---AGCCTGCTGGACCCTCTGGCACTCCGCTCCCAGTGGCAGGACCCCTGAATAAAGGAGGACCTCTGAGAGAAGCCACCGCCTCTCC---CGCATCCATCTCCAGGTGGGGGGTC a score=11954 s hg19.chr6_ssto_hap7 795155 800 + 4928567 GATGCCAGCTGCCTTTTTGTTCCTCCCCACCTCTGGCTTATCTGCTAACGCCCGTTGGAGAATCACTCTGAGAGATTCCTTCAGCCTT------TTCTTTCTGAGGCTCCCCACAAAGAAATAAATGATAGGGTTGGCGCTGCTGTTTATAATG---AGGAACAAGGAAATTAAATAGG------AGGTGGTGACA----AACATTTTGAAATCTGTTATGAGGGGTGCCA-----CGCTCAGGGGTAGGGCCCAGAGTAGGAACATGGGGGCCGAGATCTGCACCACCGCATAGACCCTGGTGGCCTTTTGCTGCTGGGAGCAGCACAGGAATCTAATGAGTAGAGTCAGACTCGACACACA---CATCACAAGTGAAAGGAT-AGCATGGAAGAGCCCAGAAAGCTTTAGAAATATGACACATGCCTTTACATGTTTCCAGTAAGTTAGGAAA----AGTGATTTTACT-----ATGTTGATGCAAAAAGGCAGGCCCCAGATGAGGGTGCAGACAACATTAGATGTGTATTTTGGGCGGTGGCATCTGTACCAGATGGGGAAGAGGACACACACACACCGCTCTGTGCTGATGGCCACCAGGAGACAGAGACACACCTCAAAGGAGAAGGGAGACAATATGGCCAGGAAATCAGGGAT---AAAAAACACGACTCCATGATAAGTTAGCAGAGTCACCTGTAAGAACCCCACTGCCGAGCAGCAAAGATAGATCACGTCAGCAGCGACCAGGTGGAGGATGTATACCATGTAGGGATTCGTGGCCCCAC-------AGCAAAGCAGCCAGAAGACAGTGCCATTCAATAAGACCCCACAGAGGG s canFam2.chr21 44386280 831 + 54024781 GAGGGCTGCTGACTTCACTGTCATCCCCTCCGGTTACGT-CCTGC-AGAGCCCGCTGGAGGACCATCTTGAGGGTCTTCTGTCGCCGTGGCCACCGCTGTCTAAAGGAGCCAACGAAGAAGTAAATGACGGGGTTGGCACAGCTGTTGACACAGGACAGGACAAGCGCAACCAGATAAAGATGCCAGAGGATGACATGAGACCTCGTCTGAATCCAAAATAAGAGGAACCAGTGAATGCCAAAGGGCAGGCCGCAGAGGAGGAAGGCCAGTACCGTAAGGACCACGGTCACGTACAGCCTGGTCAGCGGCACCCGCTGGGAGCTGCACAGCAGTCTGGTCAGCAGGGCCAGGCTGGAGCCAGAGAGAAGCACAAATAAGAAGATGAGCCAGGTGGCGGTGATGAAG--TCAAATGCCCGACACCAACCATAGTCCAAATCCAGAAA--CAGGAAGCCACAGTACTGCCCCTCCAGGATGCTGAGCAGCAGAGACAGGGCCCAGAGCAGGGCGCACATCACAGCTGACGTGTGTTTTGGGCGGTGGCAGCGGTACCAGATGGGACACAGGGCCGACAGGCAGCGCTCCAGGCTAATGGCACTGAGAATGCTCAGGCTCGCGATGTAGGCGAAGGTCCACACGGTGGTGAAGAAGCTGGGGATCGCGAGGGGCGTGG----AGTGGAAGTTGAC-GAGTTG-CTCCAGGGAATATACGGTCTGGAAGGAGAGGTAGAGGAAGTCGGCTCCTGCCAGGTTGAGGATGTAGACGGAGAAGGCGTTC----CTCCGCATGCGGAAGCCCAGGAACCAGAGCACGATCACGTTTCCTGCCAGCCCACCTAGGG a score=3582 s hg19.chr6_ssto_hap7 797076 106 + 4928567 GGAAAATAAGGAAATCTGCGTTTCTCCAGGGGCGTGAGTCTCAGGCAGTGTCTGTGTGGGCATCATCGACTGCTATGCTCCAAA--TGTCAGCTGAGGAGAAGGAAAT s canFam2.chr18 50226311 108 + 58872314 GAGAAATAGAGAGATGTGCCTCTCTCCAGGTGCAGGAGACTCTGGTAGCATGCACGCAGGCGTCCTTGACTGCTGTTCTCTCAACCCATGGGCAGAGGGCAGAGGAAT a score=29075 s hg19.chr6_ssto_hap7 797488 476 + 4928567 taatatttatgtatttatttattGCTGTTGTCCCAGGTTTATTGAAAATAAAATCCAGTGACTGCTGTATATTACAGCATTGGAGAAAGAGTCAAACAGCTCCACGAGGCATTTTGAAATTCATCCCAACTGTAGGCCGAGTGACCTGCAGGTTGGACAGGCTGCCAAAGTCCAAAAGCTTCAGCATTTCCTTAGTGTCAGGATCTACTTCGATGATCTCCTGATCCAGGGCTGAGACCTTGGGGACATAATTGTCCCTCCTTTCTTTCTCCTCCTCCTGTAGCTTGATGGAGATACCTCTCACTGGACCTCTCTGAATCTGGTTCGTCAGATGCGTGACGCAGCCTGCTCTCCTGTTGTGGAGCTTCTTGCTGAGGATAATGGGGATCTCCT--CACACACACTTGTTTGTGTGGAAGTCATTGCCCAGGCACATGTAGTACTTTTCTACGATGACCTAGGCCACCTTCGTCACAGT s canFam2.chr32 15634595 450 - 41731424 TAAAATATATGTACATTTTT-------TTGTCCAAGGTTTATTGAAGATA---------------------TTACAGCACAGCAGAAAGATTCAAACAGCTCCCCATGATGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGACAGGCTTCCAAAGTCCAAGAGTTTCAGCATCTCCTTAGTGTCAGGATCTACCTCAATGATCTCCTGATCCAGGGCTGAGCCCTCGGGCACATAGTTATCCCTCCTTTCTCTCTCTTCCTCTTGCAACTTGATGGAGATGCCTCTCACCGGGCCCCACTGAATCCACTTCATCAGATGTGTGACATAGCTTGAGATCTTGTTGCGGAGCTTCTTGCTGGGGATGATGGCAATCTCCTTGCACACGCGCTTATTGGTGTGGAAGTCGTTCCCCAGGCGCGTGTAGTACTCCTCGATGATGACTCGGGCTGCCTTCTTCACGGt a score=25246 s hg19.chr6_ssto_hap7 798380 1325 + 4928567 actaataataattgttatttttataGAATCTGGAATTGTGGAGCAGA---CTTCGCAAGGCTTCTCTGACCT----CTGCCTCCCGCTCTGGGATCTGTGAAACACACTGGGCTCTTCTTCTAGACCTCCCTTT---TTGAAGCTCCTCCAAAGACCGTTTCATCATCTCTACTCAACAGTCTCCTCAGGAAATTGCCTC-----TTCAGTAGGCAAATGTCACTTGCCACA--AACTTATCTTTGG--CATGAGGATAAGACAGTGCTAAGGT--AGAACTGTCTGTACCTTCTTTGGGTttacattgtgataactgcaaggagaaaaataaattgggctgagtggatagaaaatgataagggtaatggatgtttcctagtgggataaatgaggggagtttcttagtaggacatggagatctgaatgacctactggagcaaccaggtgacagccagaaggaaagagccacaggcaggctcagcaagttcaccaccctggg-gcaagTGGCTTCATCTGCTTTGTTAATCTTTGATGCTCCTGTCCAGAGAGGGCCTCTTAAGCAACTTGAGTGCAATAACTATTTTTCT----ATTATTGCGTTAATAAACCCCAAGAAGGTCCCTGCAACTCTAGAGAGTTAAAGACTTATAAGCCATTTTCAAGATTGGAGAATATTCTTATCTCAGCCATCAGT----GGACAGAAAGGGGCAGCCAGGCC-CCTTCAGAGCAGCACTGAGCTACTGTCCCTGGAGTGGTGGGGCCTGACCACAGCTTCCTCTTTCAACCATGGAATCCTTATCACTATTTTGCAAACACCAAAGATGTAGCCTCAGATGTGAATCTACTCACATGCTGGAAGTTT-GTCCATGATGTTGAGAGCTCGTTTAAGTGGAAGATCCTGGATGAGTGCAGATACAGACTGTGAGCAGGAGAGCTCTGCTCTGTCTCTTTTCAAGACTCTGAGACAGAGGCCAAGAGCCTAGCATGCAAAACACCTCAGACAATGCATCCAGGGTAGGGGAGAACTGATATGAACCATTCACCCTTAGCCAAAAACCTGCTCACCTTGGGCAGGTGTGGTACCTCAAGGCTGACCACAGACTAGAGGAGATCTCATGTGTCTTCCTTAGAGAGATTCCTGTCCACCTTCCTGTCTCAGGAAGATGGATGGAATCATTTCATTGGAGGATGCCAACATCCCCTGTCCAGGGCCCACTGCCTGAGCCTTGGACATTTCGGCTGAGCTGGCTAGGCCTCTGAGAATCAGCCCT-GATGACCCTTGATGCCCCACTATGGAGTCCAGAACAC--TGAAGAACT----TAGGATG-CTTGAGAGGTGAAACGCTCTGGGC s canFam2.chr18 50226425 1190 + 58872314 ACTACTAATAAT----ACAGTAACTGAAGCAAGAGCCGTGGA-CAGATGCCTTCAGAAGCCCTC-ATGCCCTGTTGCTTCCCTCCGGGCCTGGACCTA-GAGGCTCAGGGGGGTC--CTGCGAGCCGTCTCCCTCCATTGAAGCTTGTCCACAGA-----TGTTCAGTTCTCTCCAAC------CTATGGAAGCGGCCTGAGATGCTCAGTAAGCA----CCACTTGTCACATAAACTT---TTTGGTGCAAGAGGATGGAACAGTGAGTAGATCAGGACCTGTCTCTGCTCCGTTTGAGTTTACGTGGTGGTAACTGCTAAGAAAGAAA-----------------------------------------------------------ACAAAAGGAG-------GTGGAACA----GATCTGAGGGGCCCGATGGAGCAAGTGGG-----GCTGGGGTGAGGGGG----AGGC--GTCTGGTAGCTTTGCTGGCCGGGGTGCAGACGGCTCTGTCTG--TGGCTCATCTCTGAGGCCTGTGTCCACAGACAGCCTTCCATACAATTTGAGCTTGATTGATTTTTTTTTTCTAACCAGAGAGTTAGTGAACCCCGCGGAGGTCCCTGGAACTCCAGGGTGGTGAGAGCTCAGAAGC-ACCATCCGGTCTGGAGAATGTTCTGGTCTTAGCAAACAGTCACTGCAGACAGAGGGGTAGCTGGGCAGCCCATGGCACGGCGCCGAGCTGGTACTCCAGGGGTGCTGAG-TCTGAGCACAGCCTCCTCTTTCCACC-TTGACTCCTTATCGACATTTT------ATTGAAGATGGAGCCTCAGAGGT-AAGCTGCTCATGTGGTGGGAGCCCCATGTGTGAGGCCAAGAGCT-GCTGGAATG-AAGATCCTGCTGGATAGCAGGTGCGTGCCGGAGGCAGGAGAGCTCTGCTC---CTTGTTTCAGGGCTCTGAGA--GATGCCAGGAGCGTGGCTGGGAGGAAATCCTCGACAGTACATGCCAAGCAGAGCAGGGCTAACATGACACGGTCGCC---------AGACC--------------------------------ATGGCTACAGACCAGGGGCCACTTCACCCGTGTTCCCCGGGGGTCATCGTGGCC-TCTCCGAGTCTCCACAAGATGTATGGAGCCCTTTGCTGGGAGGA-GCCACCACTTCCT--CCAGACCTCGCAGCCTGAGC-TTGGACATCTCTGGTGAGCCGGCTGGGC-TCTGAGAACCAGCTCTTGATGACCCTACATGTCCCACCATGGAGCCCAGAACACCGTGCAGACCTCAAGCAGGGTGACTTGAGA-GTGAGACCCTCTGGGC a score=4564 s hg19.chr6_ssto_hap7 808727 212 + 4928567 TACTTTTTCCACCAGACTCCTTCACGTGCCTAATTTGGGACATGGTTTCTGAGCTGCAGGTGTTGCCCACTCCAGCCCAGAGATCCCAGAACATCCTGCAAGCTCAGACGCAGGATAAAGGGCCACAGGAGCAGGAGCCTCCTCTCTCTGGGCAACTTCAGACTGTTTCCCCACTGTGCTGTCCTAGAAGGGGCTGATGCAGTGAACAGAGC s canFam2.chr18 50227615 182 + 58872314 TATTCCTTTCACCAG----------GAGCATAATTCGGAGTATGGTTTTCCAGTTGTTCATTGTGTCC-TGGCAGCTCTGAGAT-------------GGATGGACAGACG---GACGGAGGGCCA-GGGAGCAGAGTCCTGGCCTCTCTAGACAACCT--GGCTCCTTTCTCACTGTGCTGTCCTCAGGGAGTGCCATGCAGTGAACGGGAC a score=2959 s hg19.chr6_ssto_hap7 809843 134 + 4928567 CCCTGCCCAGTGGATACTGTGTGGTGTTTCCACAAAGTTGCATCTTTGAGCACCTCACAGAGAATCTGGAGCCTCTCAACCAG------GACAACGTGAGAAAAAAATCTGAAGAAAAAGGCCCAGGTGCTTGGGGTAAG s canFam2.chr21 266491 139 - 54024781 CCATGGCCAGTGAGACCATCATAGTTCTGACACCAAATGGCATCAATTTCCCCCAAACAGGGAAACCCAAACCTACCAAGCAGAGGCAAGACAGCCT-AGAGAAACGTCTTAAGGCAGAGGTCAAAGTTTTTGGGGTAAG a score=3285 s hg19.chr6_ssto_hap7 810272 194 + 4928567 TATTCTAGATTTTACTTCCCAGGGATTTTTTTTTCTTTCTAAAAATTATAGACAATTCATCTCCTATTCTCCCTTCTTGAGAAATTAACCATTTGAAAACAGATATGTGCCCTTAGTCTGCCTTCCAATATCTCTCATACGATCCATGATTT-TTAAAGAAATACAACTCCATTGCATGACCAAAGGGAGGAGGG s canFam2.chr21 267048 149 - 54024781 TAGTCTATATTTTA------AGGGAATTTTTTCTCTCACTGTGAATTATAGGAAATAAA---------CTTCCTTTCTGA--------------GAACAGAGATATTTTCCTTTTGCTAGCT--------TCTCTCCTCTCATGAATGATTTATTAAAGA-----AGCTCC-TTG---GAGCAAAGGGAGGAGGG a score=6452 s hg19.chr6_ssto_hap7 811597 202 + 4928567 TGACCCTTCTTCCCTAACAGACCATCCAGATCCTCTGTGG--CTTTGCAGTTATGAGCATGGGGATCCTTTTGGCATGTACTTCCTTTCCCTGTCACTTTGGCCCAGTGGTTCTCACCTTGGTGAGGTCTGGATACCCATTCGTAGGAGCCAAGTATGTGAGTAGGATGGGTGTTCATGGAGGGTGGTCTCTGGGATGGAGCAG s canFam2.chr21 267908 196 - 54024781 TAATCCTACTTCC--AACAGACCATTCAGATCCTGTGCGGAGCGATGCTGTT--GATCTTGGGAATTATTTTGGCATTCGCTCCCTCCTCTCCACACTTTACCGCAGTGCTTTCCGTCCTGTTGAAGACTTCTTACCCATTCATAGGAGCCTTGTGTGTGAGTAG---AGATCCTTA-GGAGGATGGGGTGGGTGCTGGAGAAG a score=6460 s hg19.chr6_ssto_hap7 813562 140 + 4928567 TGGTAGGGACATCGGGGTGCTTGTTCATGTGGAAACTGACTTTACCATTTTC-CTCTTTTCTGAGTAGTTTATCATTTCTGGATTGCTGTCTGTCATTTTGGGAAGAAAATCAAACAAGCATCTGGTGAGTATAGGAACAA s canFam2.chr21 269325 141 - 54024781 TGCTAATAACATTGTGGCTACACCTTATGTAGAAACTGACCTTGCCATTGTCTCTCCTTTCTGAGTAGTTTGTCATTTCTGGAATTCTATCAATCGTCATGGAGAAAAGGTCAACTAAGCCTTTGGTGAGTACAGAACCAA a score=1267 s hg19.chr6_ssto_hap7 815764 186 + 4928567 TCCCCTGCAGGCCTGGAACAGCCTGATCAGCAGCCTCCTAAGCCCCATGGCTGCCACAGTGGGCCTCATTGTCCTTCCCTATCACCTAG-----CCGGGG--TGT-TCCCA--GCTGCCAGACAGTGCCAACTGGTGGTGCCTGCCCATCAGTGCCCCAAGACAGCCACTACTTTTCGAAGAATGAGACCACCAGC s canFam2.chr21 53832359 190 + 54024781 TCTTTTTCAGGCCATGAGCAGCCTGACCTCAAACGTGGTGAGTTCTCTCGCCGCTGGAGTAGGCCTCTTCCTCCTTGCTGATGGCCTGGTAGCCCTGGGGACTGTCTCTCAACGCTGTGACTCAG-----AAAGGGAATATCTATCC-TCCCTGCCTTATTCGATGTACTATTACGCGATATATGAATTCAAGGAA a score=3187 s hg19.chr6_ssto_hap7 815950 378 + 4928567 TGCTTTGTGGCCAGCTCCAGCTTACTGGTGAGTATTTTTAGGTAGAATCTTCCAGACTAGTGAAGTCTTTGAGA-----------TTTTCTGCTTCTTGTTCA----CTGC----TTCCTTCTGATGTGGACCATGCGGAAAG---AGGC----AGAACACAGGAACCCACACATGGGAGAATAGCAGGCATTTGACT---GGACTGTGCCAAAAGAGTTGTTCA-------AGTACAATATCAAGCAAGACTGTAGTTGCAAAAAGACATAACCAACAACTTGGTTTCAATTTGAGCACCTTAATAAACAAACTGATTTAACTGTCATAGTCTCAAGGGATGGGTTTTTCCAAGCAAGAACTCTAGGGT----CAGGGTAGCGAATTGCTCAAGAAAGGCCAAGAGCTCAGGGAGAC s canFam2.chr21 271990 392 - 54024781 TGCTTCATGACCAAAGGCACTCTGGCCGTAAGTATTTTTAGGTGAACTGTTCCAATCTTCTGAGGTTTCTGAAATCCTTGACCGTTTTTCTCCCTTCTTTTGAAAATCTGTCGAATTCTTTGTTTTGGGCATCAGGTGGAAGGCCAGGGCTATGTGAACAAAAG-------ACATGACAGA--AACAAGGGCTAGACTCTGGGGTTACATCACTAGTGAGGTGAAATGGAAGAGTAAATGTTAAATCAAGTTGATAAT---AAAAAACTAAAACTTACTGCTGA--------TAGAGTTTCTTAATAATCAAAGTAATTCTGTTGTTAGAGGCATAAAGTAT--GTTTGTTCCACCAAAAATCTTGGCATACGGAAGGAAGGCAAATT----AAGAAAGGTGATCATAGCAGGAAGAC a score=5466 s hg19.chr6_ssto_hap7 817994 173 + 4928567 CTCAGGAAGGCA-GAAGGGTTGGCCAG--TCCAGCACAG---ACCTCGTGCATCCTGCATTTCAGAGGATCCTGTCTGTGATGCTCCTCTTCACGGCATTGGAGCTCAGTGTCGCTATCCTTTCTTCTGTCCTCTTGTGAAAAAAGACCTGTTCAGATGTCCTCAGGGTGAACCTGCTG s canFam2.chr21 273851 179 - 54024781 CTGAGCAAGGCATGATGGCTTGGGCTGACTCAAGCACTGCTCACCTTGTATGTCCTGAATTTCAGGGAACTCTGTCTGTGATGCTGATTTGCACGGTGCTGGAGTTGTGCCTGGCCTGGCTCGCTGCCGTGGTTTGGTGGAAACAGGCTCGCTCAGACTTCACTGGGGTGAGTGTGCTG a score=4068 s hg19.chr6_ssto_hap7 826485 414 + 4928567 TAAGTGAGAGGCACATCTCAGCACAGCTGACTGATCATTCTCGGGTAAGTGTGACCTGCTGTCTCCCCTTCCTGCTG---ACATGGGGGCAGATGCTACCAGATGGCATCACTGGCCTCCAGGGCGCTGTGGAGGGTAATGTCGCTGAGCTCCCACCAGGTGCTTTCTCTTCACTGACCATGTATTGCAGCCGtctcattcaccctcacactgacttcgtggaatgggtgctaatgtacccatttgaagatgagatgcctgaggtcagaggggaggcaactgacccagggACCCAGATGTGACTCTGGACTGTGATCTCAGCCCTGCCTTGTGCTGTCCTGCACTCAACTCCTGGCCTTTGCAGCCTTCCTGCCTTAGATACAAAATCTGCTGAGGATTCTGGACCCCAGTGGGGGT s canFam2.chr24 381 354 - 50763139 TAAAGAGGAGGCAC---TCA-CACAG-TGACAGGTCA----CGGGTGAGTGACAGCTG--ATCCCTGCTCCCCGCGGGCCACAGTGGGGCCTGTGGGTCCAGGTGGGGGCACAGGCCTCCCGGGC--TGGGGTCCACAACACC-CTGACCCCCCATGCGATGA--------CCGTGAGCAGCTCCTACAGCCCTTCCACAGCCCCACGGGGTGA-------GAGCGGCCACCCAGCTGCCCCCGTCCAGGGAAGGAGGCTGCAGTCGGAACTCAGGCATCTCCCCCGGGACCCC--------CACTCCCCTGTAA-----GCCCTGTGCTGTGCAGGCAGGCACCCAAGCCATGACTTTTCCAG----CCTGTCCTAGATGCA-----------------TGGACCCCAACAGGGGT a score=4314 s hg19.chr6_ssto_hap7 828052 254 + 4928567 GTCAGGCTGCTCCCTCCAGGGAGGCGGGTCTCACCTCTCCCTCTGTTCCCTGG------TCTGATGGTCCTGGACTCCTTCGGGATGCAGGGCAAGGATGAG-----CTGCCCACACGCCCATACCCAACAACTTTTATTTTGGCC-TCCCTCACCCTCTCTCCCTCTGCCTTGCAGGTTGCTGATCCAGGGCACCAGTGGACACAGGAGATGAAGATG---TTTACATCTACAAGGTCATCAGTCAGCTTGAGATTCCACAGTGAGTC s canFam2.chr15 45680750 259 + 67211953 GTCAGGCTGCTCCCACTGGGCATACAGGCC------CTTCCTCTCATGCCTGGCCAATCTCAAAGAGTCCTGGGCTCCCTTGGGATTTAGGGGAGAGAGGAGCCATTCTGCTC---CTTCCTTTCCCCATGTCCCTGGCTCTGATCGGTCCCCACCAGGAGGCCCCCTCTGTTTCAGGCTGCCAAGCAAGGTCTCCACAGGACCCTTGGGATGATGCTGACCTGTCACTGTGGAAGCTCA-CGGACCATCAGGGATTTTGCAGTGAGTC a score=3871 s hg19.chr6_ssto_hap7 828637 169 + 4928567 AAGGAATCCCCCTGCAGATGTGGAGTCAGGCATGGTCACTCCTGCTGGACGTTAAGAAGGTGAAGGCTGAAAAC-----------------------------------CCAAGTAAGTACCAGGTATGGTCCTTCCACACTCAGCCACAGCGGAAGAAACAGGCCAGGCCATGTCAGGAGCCCAGGTCTCTAGCTAGAGGAAA s canFam2.chr15 45682938 191 + 67211953 AAGGGGTCCCACCCCAGGTGTGGGGACAGGTGTGGTTGTGTTTGCTTGACATCGAGAAGGTTAAAGTCAGGAGCCCAGGGGAAAAAAAAAGAAAAAGAAAAAAAAGGAACCAGGGAAATACCAGGTAGGGCCTTTCCACTCTTGGC-------------AGATGCATGGCCCTGAGGGGAGGCCTGGGCAAGAGCTGAGGGGAA a score=5567 s hg19.chr6_ssto_hap7 829252 173 + 4928567 CAGAAAATAAAGCAGCAGGGCAAGATGTCCTCAGCGAAAATAAACCAGATTGACCTGGACATGAAGTGCACCTTCAGACACCATGTCATGTTTTGGGAGCACTACAGAGTCAGGTAAGGCCTATGGGGGATGGAGGGTCCCAGGGGAGACGGAGGAATTCAG----AGGAATAGGGG s canFam2.chr15 45683605 176 + 67211953 CAGGAAATGAAGGAGGAGGCCCAGGTCTCCTCCCAGGACATCAAACAAATAGATCTAGACATCAACAGAACCTTCCGCAACCATATCATGTTCTGGGACCGCTATGGGGTTGGGTGAGGCTGCTGGGCAA-ACAGGGTTCCGGGAGCCCCAGGGGCCTTCTGGGTAGGGAACATGGG a score=6595 s hg19.chr6_ssto_hap7 836365 320 + 4928567 GCCTTCTCAGGTGACTTCTGCCCTCCTGGGTGACATTAGTTCTCCCCTCTCAAGTGATCTGTGCCCTCCTAGGTTACCTCAGCTCTCCCAGGTGACCTCTGCCTTTCCAGATGACTTCAGTCTTTTCAGGTGACCTCAGCCCTCCTAAGTGACATTAGTCCTCCCTGGTTATCTCTGCCCTCCCTGGTGAACTCAGGTCTTCCAGGGGACCTCTGCTTTCCCAGATGATCTCTGCCTTCTCAGGTGACATTAGTTCTCCTAGGGGATATTAACTCTCCCAAGTGACCTC--TTCCCTTCCAAGTGACCTGTTTCCTCAGGTG s canFam2.chr3 6982069 317 + 94715083 GCCCTCTTCTACGACCTCAGCCCTCGTCCATGACATCGGCCTTCTTCT-----ACGACATCAGCCCTCTTCCATGACGTCAGCTCTCTTCTACGACCTCGGCCCTCTTCTATGACACCAGCCTTCTTCTACGACCTCGGCCCTCTTCTATGACACCAGCCTTCTTCTACGACCTCGGCCCTCTTCTATGACACCAGCCTTCTTCTACGACCTCGGTCCTCTTCTATGACACCAGCCTTCTTCTACGACCTCGGCCCTCTTCTATGACACCAGCCTTCTTCTACGACCTCGGTCCTCTTCTATGACACCAGCCTTCTTCTACG a score=26938 s hg19.chr6_ssto_hap7 836787 2840 + 4928567 CTCCAAGGTGACGTCAGCCTTGGTGAAGTCTTTCCATGATGACTTTGGCTTTTGCCAGAGGTAGGCTACTGCGGGGGCATAAGCCATATCATGCCATGAGCCACTATCCTGCTCATGTTCCAGAATGAGGAGA----CATCTGGGTGCTGGCCCAGCTGCTGGCCAATGAGAGGCTTGCCAAGCATGGTACTCTCCAAGGTGACCTCTGCCCTCTCAGGTGACACAGTCCTCCCATGTGACATTAGCTCACAGTGGACAGCTACCCACGAGGCATCACACAGCCA--GGACAGG---GGACGGCCACACTGGCTGGGTAATTGTGACTTACAGACAAGGCACCTTCTGTCCCCTGCTCATTTTGAGCCTCCAGGGTATCCCCTGCTGAGAGTCCCACAGGAGCCTGTGACTGGCCAGGGACCCGACACCCCAAGTCAGATGCCTCTTGTCCCCATCAGCAAATGGGATCACAGCTGCCCTGTGACCACCTTCTGCATCCTGGTGTCACAACCTTCTGGCCCTGACCTTATGCAGGGGACTCTTACAACCCTGCTGGTCCTTCCACCTCCCAGCTGGCCACC--------CTCCCAACCACCCTCCCTGCCCATGGCTAGACCAAGCCCAGATGACAGCTTCTGTCTGTCCTGTGT-CCCCTGCCCTGAC-CCCACATCCAGGAGAAGGCCACACACC---CTCCAGCACCCCTG-----GTCACCCCACCAGCTCCC-----ACCTGTCCTCACTGCT--TCAAAGGCAGG--CCTGCCCTTCTGGAGCCATGGCCCTGGAAGCCACTA-----AGCAGTGCCTCCAGCCAGGCCCCAGGGGCATTCCCACCCCTCCTCTCCTGGCCGAGACCACATGATGGGGTCACTGGATGGGACAGTGAAAGGCCTTGGGGTCTGGAAGCAACCACCACTGCCCAA---------------------------------CTGCCACTGCCCA-ACCGCTGCTGCCCAACTG-----------------------CCACTGCCCAACTGCCACTGCCCAGCCTGATGGCTCCACATCTCAGGAGTAGGCTCTGATTCCTTGGGGCCCCAGGAGCCTCTCAGGAGTCTACATCCCAAGATGTTCTAACTTCCAGAGTCTCCAAGCCCATCAAGAGCAAGTTTTGCTAAAAGTGTTCTGAGAGCTTATGAAGCACATGGTGAGTGGTCAGTCCCTCAG---CTCTTCCCCAGAGGCCCTGGGTCCCATGGGGTTAGCAGGGACAGGGGAAGCCTGGGGCTGGTGAGAGGCCAACTTCCAGCCAGGGCTTGATCTGGTTTTCAATGGATTCAAAGTTTGGCCTCCTTTTCCTTACCTGGAGGGGACAGAGGCACTGGGACCAGGCCAAGCTCTGGCTGAGCCAGGGCTAGGGGAAGTACATCCACTGGGGGCCCATGCCATGGGGAG-GTGTTGGGGCACAGCCACCACTGTTCTACCTCTTGGGGAAGGGTCTGCAGTGGGGTCTGGAATACAGAGGTTTTCACGGAAGCCCAGGGGACCCTGAACACTTCTATTCCTTCTATCAGGACAAGGAAGGGTTGTGCATCCGGCTTTCCACCTTAAACTGGTTTCTATGGTGCTTCATCGATGAGATAAGGATGCATAGGAGACCCCAGGCCAGGTACCTCCTTTCCCCACAGTGCTCAGCTCCCCCAGCCCAGGGGTCTGGCTTCCCCAGGAGGACCCAGCTCACCCCCACCCCACAGGAGGCACAGGCAGGTCTCTGCAGGGCACACAAGCCAGGACCTGTATGATGGGAGCTTTACACACCAGAC-------------ACC--------------AGGGAATTCTGGGCAGACTGGGCCA----------AGACCCATCTTGGAAGAGCCAAAGGAGCCAGGGAAGCC-ACAAGCCCTCAG-------------------GAAGCCCCTTAT-----------------------------TCTG---------------------------------------------------GGAACCACATTTCTGCTGAGATGAGTCCATCCCCATGAAGAGCTGCCGGACCTTGTCTGACCCAGCCTTATGGAAGATTGGGTGGGTCTCTTCCCAAGCAGA-GGGAGCCTCAGGAAGTCCAGACTGAGGCTACAGTGGGCCCTGCTCAAGCCACCAGCCCCGAGGTTGGAAAGGCCAGGTCCTCCCACACCTGCTGTTCCCACAGACTTCCTTCATGCTCATCCTGTGGCTCTGGGATGTCTACCTACTGGGAGGTGAGTGTGTGGTGACAACTATGGTATACATGGCCTTCACAGC-CACAGAATTAAGT----CCCTGGGTGGCCAATGGTGCCCA--GAAGGAGCATGCAGGACAG---ACCCTGGGACCTATAGCCAGGACAGATTCCTGGCTTCTGGTGTGTGATGACCTGAGAGCAGCATCCACACTGTCCAGATGGCTCTCTGCTCCAGCCTGGAGGTAGGGCCAGACCAGGCCTGGTG-GGCTGGGCAGGGAG-TGGACCCAGGTACCAAACCCACTCCTGACACAACCCAGATGAAAGGCAAGAGTGTGTTGAGCACTTCCCTGCCCAGGCCTTCCTCCAGCTGTGGT-TTTCTGTGAACATCTGGACCCCTGGGGCAGCCACAGTAGGATCCAGCACCGCCCAGTGGTGGGTGCCTGGGGCAGGAACAAGGTGCAGACACTGACTCTCCCACAGACCCCTCCCAGCCTCATAGTCACCCTGTCCCTAGAACACCCCCTGAAGCTGTTCCTGTTTGGCTTGCAGGAGTTCCTTCAGGACACACTGTCCTAGGCCTGGGCCCTGGAGGAGGACATGGTGATGAGGCACCCTGAGGCCTCCATGGGGGAACTGAGAAGCATGCACTGTGACCTGCACACCCAGGTGGGCTTCAGCACCAAGTCTCCTCCTGTGTCACCCTGC-GGGGCAGTAAATAGTGGGAAGTGCCC---AGACCTCACCAGCCCTGCTCCCTGGGCCTTCCTCCAGCCCCTCCTCTCCCTCCTCCTCTAAGAAGCTTCTGAAACCAGGC s canFam2.chr16 24209371 2414 + 62570175 CTCAGAGGGGGCCTCAG---GGGTGGACACCCTCCATGG-GGCTCTGGCTCTTGCAGGAAGTGGGCTACTGCCAGGGCATGAGCCAGATTGTG---------GCCATCCTACTGATGTTCCTGACTGAGGAGGATGCCTTCTGGGCGCTGGCCCAGCTGATGACCAATGAGAGGCACGTCATGCATAGTA--------GGGG----CTGGCCTGGCTGCTGG------------ATGGAATTGGAGCTCA----GGAGAGCTTCCTTGCAGGGCTGCTGCAGCCATGGAACAGGCGGGGATGCCCACCCAGACTG---------------------------------------------------CCTCC-------CCACTGACAAGGGCACCAC------------CTCCCTAGGGGCCCT--------------------------------------TGGGGTC---------------------------------------------CTGGTCCAG----------------TCTTGCACTCCTGCTGCTCCTTCAGCCCCCTGTCTGGCTGCCTGCTCGTCCCCCAGGCCACCCAGCCAGTCCATAGCCAGATAAAGCCCAGGTGGCAGCATCTCCCCCTACTGTGTGCCCCCAGCCTGACTCCCAAGCCCCAGAGATGGCCACCCATCTCTCTCCCAAGCCCCAGAGGGTGCACCCCCATCACCCTCCCTGTGACCTGCACCCACTGCCCCTCAATGCTGGGGACCTGCCCACCC----CCATGGC------AGCCACTAGAGGAAAGAGGGT-----GCTGGGTCAGACAGGCCTGATCGTCACTCAGCCCAGGGCAG---CCACCCCATGGGGTCTCTGT----GAAGATGAGGGTCCCCGGGCCCTG-------CCACCTCTGGCCTAGAAGACAGACCTGCTCTCTGGGAAGAGTGGGTCCAGTCAGGGCTCAGAGGGCTGTGAGCACACTGTGGTCAGGGCATGGGAGAGGAGGCCCCTGCTAGGACACC-CCACCCCGCCTTGTG-----------TGGGAGGAGGCCTTGATCACTGGGGGCCT-GGGGCTTTCTCAGGCTTCTTTATTCCAGGGTTCCCCAAACTACTGAAATTCCAGGTCCATCACAAGCACATTCTAGACAGAGGTCTCCCCAAGCTGAAGAAGCACATGGAGAGTAG-AAGCTTCTCAGAGGCTCCATCCCTGTGGCCCCAGG-------------GCAGGGGT-GGGGCAGCACAGTCCTTCTGAGCTGC--------------------------------------TCAGAGTTTGGCATCATGTTCCTCCTCCTGGGGAGCCGGGGGCACTG------------------------TCAGGGCTGGG--------------TGGGG--------CATGAGGAGTGTGT----------CCACC-TGGCTCCACAGCATGGGG------------------------------------------------------CCTGAGCACCTCATGCCCTTCCGCCAGGACAAGGAACCGATGTGCACTGGCATTTACACCCCAAGT--GTTTC---AGTGTTTCATTGACCAGGTAAGGCCACCTAAGGATCCCTG----------CTCCCTGACCTG-----------TCCCCTGACCCTGGGG--------------GAGGGCCAAGCTCAGCCCCACCCTCCAGACAACCCAGGCC-----------------CGACCCAGAGACCATATGACTG-AGGTTCACAGCCCAGACCCATCCTGAAGAAACCCAGAGGGTCCCTTGAGGAGGTTCTTGGGGGA-TGGGCTATCTCTGCCTTAGCTCCCTCAGGGAAG-GTGAGGTCAGCCTGGGGTGTCGATGAGCCCTCAGTCCATTCTGCAGCCAGCCTGGGGTCCTCTCTAGGTGTGTTGTCATCAAGTAGGGGCAGAGTCTGTGCCTCCCAGGTTTGCAGGTCGTGCTGGCCAGGGTCAGAACCCAGTGGCCCGGAGCCCTGATGTCCCTGGAAGGAGTGCATGCACGAGAGAGGCTGTGGGGCCTTGTCGGATGCAGCC----AGGACAGTGACAGGGGCTAT----GGGCAGTTGGGAGTCCCAG----CCCGAGCTGAGACTCCCAGGGGCCCTGCTCAGGCCAC-------------------------TCCTCCTGCCCTCGATGTCCCC-TAGACCCCCTTCTCACTCACCCTGAAGCTCTGGGATGCCTATATCCTGGATGAGGAGCACGTGCTCACAGCCATGGCTTACACAATCCTCAAGGTGCACAGGAGTAAGTAAGCCCCTGGGAGCCCAGGTATGCCCAAGGAAGGGGGGTGCAAGGGTGTTAACCCTGTGCTCT-------------------------------------------GAGCAGCACCCA-------------------------GGCCTGGGGGTAGGG------------TGGTATGGCTGGGAAGGCAGGTTGAGCGAGG----------ATCCCTGA---------GAGGAGCAGCAAGCAGGGGT----------CTCCCCCAGCCATAGCACTGCCCACGGTGCTCCTGGGCACAGCTGGACCCC-----CAGCCACTG----------------CCCCTGGGAGGCACCCGGGG---------------GCCACGGGCG-------GGGCCCGTCTGGGTCTGACTCACACCCAGTGCCCAGAACACCTCCTAAAGCTTCCCCTGGAAGGTCTTTGGGAGTTTCTGCAGGACTCTCTGGCCCAGACATGGGCCCTGGAGGATGAGGTGGTGCTCAGACTCCTTCTGGCCTCCAT-GCCCAGCTCTGAAGAATGAACTGTGACCTGCCCTCACAGGTGGGC-TCAGGGCCCCATCCCTTCCCAATTCAGCCTCCTGGGGTCACCCACAGTGGACAGAGCCCCTGGGGCCTTTC---TCCTCATCTCTAGGCCT--------CTCCTCTTCTTCTCCAGCCTCAGGGAAACC----AAGCCAGGC a score=22592 s hg19.chr6_ssto_hap7 840256 1625 + 4928567 AGGAGTGTCCTCAGCATTAGACCAGGGGGACCACACGGGGACCCTGAGGACTGCAGGGACCCAGGTCTGTGGGGTCCAGCCTGGCAAAAGCAAGATGTTCTCAATGGAAAAGCTGACCAAATCTGCTTTCCTTTCAGCCAAACCTGA------------------------------GCAAGCACCCCCACCACCCAGGCCTCTGCAGATATCCCCCAGCATTGAGACCCTCCCCA-AGGGGATGGGCTGCTTCTCCCTGGCCCA-CAGCCCAGCTCCAGCAGCCCATGGGTATAGCCCTCCTGAAACAGGAGCCTCATCCTCCCTCACCCTCACCTGGCTATGCTGTACCCAAGGCCAAAGCCCAGAGGCATAAGGGAGCTTCTGCAGAGCCCAGGACAGCAGGCTGCTCTCTGGGGGCCCTGGGGACTCAGAGTGTGGCCAGCCCATCCCCAGCTCAGGATAGACCACAGAGTGCTTGGTGATTCCTGCATTG---GAACTCCCTCTCTAAGCTCCCCATGGACCTGGACCTCAGAGGCCTGTGGTTTTCACAGTAGAGCTTGGAGCAGAGATGCTAGGCCCCTATCACTTCCATATGTGTCCTGGACACCTCTAAGATCATAGGACTGGCCTAGCCC-----------------CCAATACCAGACACTGCCCAGTCCCCTGATAGCCCAGAGGTAGGGCCAGAGACAACTCTCCTGCA-TGTGATGCCTACAGCTGATCACTCTTGGCAGACAGTGAACATCACGGCCCAGAAGGAGCCAGGGCAGCACTTGGCAAGCTGCCCCAAAGCCCCAGAGAGCTCCTTAGACATGGAAAGTCAATACTGATGGGGAAGCTGGACACTTGGAGGCCACTGGAG------GGAGGGGTGAGCATGGTGTCCCCACAGCCCAGGCCACCCAGCAGCATGCCCTGCATC----CATGGTCCCAACCTGTAGGGCAGAACCCCCCTCTCAACGCACAATTCCTAGACCCAGAGGGCCCTAGCCCAGACTCAACCTGAGCCCTGAAAGGGAAGGGGCACCAGGGGTGCCTTGGGGCCTCCAGCAGCAGCCAAGATACACAGGAGATGGAGCCCCCTGTGGCCCTGGCCAGAACTAGTATTTGGCTTAAGGCGGAGCAAGCCCCCTTGGAGCACTGCGTACATA----CCCGGGGCCTATGTGTGCCTGGCAAGGCCAAGCTGATGATGTTACCAAGCTCAAACT-ACCACTGGCCACCTTGGTGAGGGTGGGGCAGAAACACGTGGACCAGCCACCAACCTCATCCATTCAAGGAAGCAG--------AAATGGTCAGGCTCCTGCAG--GATAAGTGGCCACCACCAGACCACCAATGGGGCAGAGTTCTGAGGCCCAAGCAGATGGCACTGGGGCCCTGCTTCCAGG-GTCCACAATCTGCTCCAGGACACAAGACTGAAGAAAACTAAGCAAATGAGAGTCCAGGAGGCTGGATCCCTCATCTGCCATTCTTGGCAGTTGCATTTTGTGGTCAGAAAAAGTCAGGAAACTTGGCTCTACTCA----CTGCAGGAGGCTCCAAGGTGGG----------ACCAGAGCTTCCAGCATAGATTCAACAATGCCT--------AAGAATGCCTCTTCTTGGGGAAAAGGACCCCTTCCTTGGCCTCAAAGCCCCCACTTATTT--TGATTAAAGCACAATAAAGTCTTTGTTGTT s canFam2.chr16 24211832 1583 + 62570175 AGGGCTGTGGACAGGGTCAGGCCAAGGGT-CTATGCGGGAGCCGTGAAGACCCCTGAAGCCC-----------------CCTAGCTGTGGACACATAGCCT-GCTGGAGATGCTACCTTAGTCTGCCT-CATTCCAGCGGGAACTGACAAGTTCCCTACGAGGTCCCAGAGCCTGGAGCGAGTGTCCCCAGTGCCTGGGCCTCTCCTCCCTTCTCCTACTCTTGAGACATTGCCTAGAGTGGATGAACAGACCTTCCCAGGCCCAGCCACCCAGTCTGAGCTGCC--TGG-------------------------------------ACCCCCTCCTGGCCAGGCCATCCTCAAGGCTGAGGAGCCACTGCAGGAGGGAAGCTCCCCAGAGCCCATGGCTCCACATCTGTGTCCGGGAACATTGGGGGCTCCGGTTCTGGCCTGGCTGCCCCAATCCTAGGACACCTCACTGC---CTCAGCTGCCCCCACAGTGATGGAACTCCCTCCTCATCCTCTGAGTGAACCAGGAGGGTGCAGGCAGGTGGCCCTTGGACTAGGACTTGAAGGCAGAACACTGGGTCCCCTTCCCTTTGGCACCTGCCTGGGCCACCCCAGAGGCCACACAACAGATCAGGCCCTGGAACCCCCCTGTACTCCCATCACAGGGTCCACCCAGCCCACTAAAGGAGACGCTATAGGGCCCAGGACACCCTTCCTGCCCTGTGGCCACTGCAGTTGAAGCCCCTTGCTGGGCAGTGATGGACACAGTCAGGGCAGAGACAGGGCAGCGCTGAGCCAGCTGCCCCAAAGCCCCGCACAGGCCTGGGACTCTCTGACCTCTGCATCCACAGGGAAGCTCAATGCTTGCAGGCCTCTGGAGCAGAGCGTGAGGGTGAGTGTGAGGGCCTTGAGGCTCTGGCCAGCTGGCACCATGCCCTGCCTTGTCTCACTGTCCTT-CCTGGAGTGCAGCACCCCCCACACAGGACACAAGCCCCTGACCCAGAGGGACCTGGGCTGGTCTCTCACCGAGCTCTGTGGGGGTAGGGTCGACATGAGCCCCCTGTGGC---------CAGAATGAAGACTGATGGGATTGAGCTCCCTGTAGCCCTGGCCAGTCCTGGATTCTGTCTCAAGGCTGAGCGAGCCGGCTCAGAGCAAGCAGTATGTGGTCTCCTGGGACCTGGGCATGCCCCACAGATTCAGGTCGCTGACCTAGGGCAGCAAAGGGGAATAACAGGACACCCCAGGGCAGGGGCAGGAGAGGCAGGCCAGTGGGCC-CCACTCTCACCCACACTAGGAGGCAGGCTTCTCCACATGCTGGGTCTCCAGCAGTCAGTAACCTGGCAC-------CTACCAGTGGGCCAGAGGCC--AGGATCCAGCTGAC-ATGCTGGGACCCAGC--CCAGGAACCCATAAGCTGC------------------------------------AGGTCCAGG----------TCAAGTCTGCTATCCTCAG-AATTGCCTCTCAGGCCC---CAACCTCAGGAAATGTGCCCCCACCTGGAATCCACA-TAGGCTCCAAGGTGGGGGACTCTAGCACCTGCACCCCCA-TGTGATTTCCACTTTCCCTTAAAGGACAGGAAAGTCTCCCTCCCCAAGAGAAGACACACACCCTCGGCTCTGAGCC------TGTTTGCTGTTGAAAGTTCAATAAAATGTT--GTGTT a score=6414 s hg19.chr6_ssto_hap7 841881 428 + 4928567 ATGTCCTGCCTGTTTTTGAGTTGCCCAGAGCTCTCTGCAGGAAGCCCTGGACATACTGGGGTGGATGGGAAATGAAGATGGCACAGCCCAGA-CCCTGACCAGCCTCTCACAGCCTCCCCATCCCAAAGGCCGCAGCAGG---GCCAAGCACCAGAAAGGCCAAGGTTCCCACCCAACTGTGAGCCACACTGCACTGCAGCCTCCCACTCTCAGGCAGATGCCAGGGTTAAGACCCTCCAGTAATTTCCTGTAATTCAAACTGCACCTGATAGGGACCCCCAGAGGGCTGGGAAGGGAGCAAAAGTTGGAGT--------TCCAGTGACATTG--CTCA-TTCATGACAGTCTGTACAAAGCATCCCTGAGAGGGTCTGCTGTCACCTGTGTCTACTGTCCCTGGG-TGGCTGGTCTCCGGCAGccctcccttcctttcttccc s canFam2.chr16 24213666 378 + 62570175 atGCACAGCCTGTTTCTGTGTCTCCCAGAGCTCTGTGCAAGCAG-CGTGGACAGACC--------CACAGAAAGGAGGAGGCACCTTCCAGGCCCCTGAACAGCCCCT------------------------GCAGAGGGGCTGCTGGGCAC--ACAAAGCTGATGTTCCCA------TGT------------------GCCTTCCAAGGTCGGCCAGATGCCAGGGTCAGGACCATCACAGACTTTATTGTGACTCAGTCTGTGTCC--TGTGGGCCAGGATGGGGCTAGGAA-AGAGTGACAGTGGGGGTGGGGTGGGTTGGGGGGAAGTGGCCTCAGTTCACCATGGTCTGTGCAAAG--TGCCTTGGGAGGTCTG-TGCTCCCT-CATCCAGGGAACCTGGGCTGGCCGGGCTCCGGGGGCATTTCCTCCCTCCCTTGCC a score=24542 s hg19.chr6_ssto_hap7 846092 984 + 4928567 TTCCTCCACCTTCCATCT------CATTCAACAAAGCTCTTGGGAGAACAACTTT-AAGGACTCCCTATGCCTCTTCCTTCAAAGGTAGCCAGCCAAGAAGTAGATGGCTGGTTGAGCCATACTGACTACCATGGACAGCAGCAACAGAAGGTCAAAGGCAAAGGTCAGGTATTCTTTTCCTGGCAGGTACACAAGGACAACTAAGGGCAGGCCCCAAACGAGGAAGCTGATGGCCACAAAGCGGACAATGTGGTAGATCCGGATGGGTGAACAGTTCTTCAGGCAGTACAGGCTCCTGATGATCAAAGTCAGGCTGGAAATGCCCACCACAAGACAAATAAGCATGTGAAATATTATAAAGCCTGCCTGAAATTGGTCACATGCCAGGCCCTTCTCCCATTACTCACAAACCTGGCTAACCACATGCAAAGAAAGGGCCAGGGCCCAGCTCAGGATGCTCATCACAGCAGAGGTGTGCTTTGGGCGGTGGCAGCACCAGGTGGGACAGAGGACACACAGAAAGCTCTCAATATTCATGGCCACCAGGAGACAGAGACTCACTGTGTCAGAGAAATAGGACACAGGCTCCAGAAACATGGCCACCTGCAATGTCACCTGGTGATACAGCATGAGGATTTTCTCCAACAGGATCACAGTTACACAGGAGAGGTTGACCATATCAGCAGCAGCCAGGTTAAGGACATAGGTCATGTAGGGGCTGCTCCTGACCTGGAAGCAGAAAAGCCAGCACACCACACCATTGCCCACCAGCCCACAGAAGGCCACCAGCACTGTCAGGATGAAAACCACCTGTTTGCCCACCAACCACTCGCCTCCCGTATGACTCATGTTCACTTGT----------CCTGGGGTCTCTGTCCTGTTGTCCCAATCCAGCTTCCCAGAGAACACTGAGAGAAACTGGGCCATGGTGGGCTGCCTTGGCTGCCTGGGCACACCCTGCAAAGACAAAGGT-TGGTAACTTACCAGGCCTAG s canFam2.chr18 50186261 954 + 58872314 TCCCCCCACCTTACATCTGCATCTCACTCAGCAGGGCCCACTGGAGGAGGGTTCTCAGGGAGCCTGGGCGCTGCCTCTTGCAGAGGTGCAGAGCCAGGAAATAAAGGGCCAGGTGAGCCGTAATGGCCACACTGGGCAGGAGCAAGAGGAGGTCAAAGACCAGGGCCAGGGACTCTTGT---GGCAGGAGTATCACGAC--CTCGGGGTGGACCCGCGAGGAAGATGGTGATGACCACCGTGCAGATGGC-TAGTTGGCCCTGGTAAGGGAGCACTG-------------GGGCACCAGCAGGCCAGAGTCAGGCTGGACAAACATGTCCCCAGGCCCAGGAGCAGGTGAAGTGCCAGCAGTGCTGCACAGAGCTGGGTGCACACGGCGTCTCTGTCCAGGTGGTCACAGGCCTTGATCCCGGTGTGCAGACAGAGGGCCGGGGCCCAGCTCAGGGTGCTCGTGGCCTCTGAGGTGCACTGCGGGCGGCGGCC---CCATGGGGGAAAGTGGGTGTCCACGTTGCGCTCGCTGCCCATGGCCGCCAGGAGATAGG--CCCGCCGGGTTGGAGAAACTGGTGACCGTGTCCAGCACCATGGCCGTGGGCCATGTCCCCTGGGGGTGCTGCTCCAGGGTTTTCTCCGATGGGACGAAAGCCAAGCAGCAGAGGCCCAGGCTATTGGCAATGGCCAGGTGAAGGCAGTAGGTGGCTTAGGGGCTGCTGGGGACATGTGGGCGCAGAAGCCAGCACAGCATGCCATTG-CCACCAACCCGCAGAGGACTGCCAGCGCCGCGATGGGGAGGACGAACTCTGAGGACAAGAAACATCTGCTCCCTGT----CTCATCTGCAGCTCTGGAGACAGCAGTTGGGGCCTC---CCCGTGGG---GATCCAGGTCCTAGGAGGGGGTGGTGCTGAGTTGGTTCATGGAGGG-------------CTGGATGCACCCTGAGAAGACAAAGGTGTGGTACCTTAGCAAGTCTGG a score=9002 s hg19.chr6_ssto_hap7 850268 658 + 4928567 GTGAAATCAGAAGACCCAAAAGGATTTTCCTAGAAGTCATAGACTACACCTCAGTAATACAGTGGCTCAAATCCTACCTTTAACAGAATAAC-----ACACCCTCTGCCCATCTACACAGCTGGGGCATTTGTGAACCAGGGG----CCAGGGCACAGTTGTGGCTCACCTGCTGGGACTACCCTGGAACCCCGAATCCTGCTTTCTCCAGGAACCTGGTTTCTGTCCTGTCCCCATTTTCCTGAGAAATGCACCTTCCCCAGTAAAAAATCATGAGGTTTCAAATTCCAGGAAAATATGTCTCTGAGTTAAAATGGTTTGAAAATGAAAGAAGGAAGAGAGATCTTTTCTCATACCTGG----GAAGTCTTGGATAGAATTGGTACCACAGAGGCCAATGTCCTGAGAGATGAAAGTTCTGCCCACAGGTCAGGAAGCAATCTAACGATGTCTGATTTGAACTGGGTCCTGACAAGAGGTTGTCAATTTCTCTGTGTCTGTTGGGTCTTCCTGTACTGGGGCAAATTGCATATCAGGGCCCAGGCCTTTATCTGAAACATTGTATCTCAGCATCTCCTGATATCCCCCATCCCACTGACACTTTTGATTACTCCATCCTGAACAATAACTTCCCTCAAAAAAGAAGGATCTTTAAGACAAGTTGTCACCT s canFam2.chr18 50187936 548 + 58872314 GTAAAATCAGAGGAGCCAAGACCCTGGCCCGAGGAGGTCCAACCCAAGCCTGGGTG-TGTGGGACCTCAAACACTGCTTCTAACGGGATGACCCTGAACACCCGCTGGCCGGTC------CGAGGGTGTGGGAGAAGCGGGAGGCTTCCAGCGC----TTG-------------GGGGAAAGTCTGGACCCCC----------------------------CCTGTCCTGTCCTTCCGTCTTCGGGGA---CACCTTCCCGA---------------------CACTCCAGGCA------TCTC------AAGAGGACTTGAGA-TGGAAGCAGGCAGGTAGATCTTTCCCTTCACCTGGTGCCAGAGCCTTGGT------------------GGCCGGTATCCCGAGAGGTCACAGTCCTGCCCTGGAGCTGGGGAGTGCTCTAG-------------GCCCAGGGTCCTGCCGGAGAGTGATCAAGGTCCCTGTGACCCCTGGGTCTTCCTGTGGGGAGGCCACTTGCAAATCCCGATGTGGGGCTTTATCTGAGACTTCCTATCTCCACCTCTCGTGATG--CCTCAGCCTGCTGGACCCTCTGG-CACTCCGCTCCCAGTGGCAGGACCCCTGAATAAAGGAGGACCTCTGAGAGAAGCCACCGCCT a score=5891 s hg19.chr6_ssto_hap7 851040 169 + 4928567 CTCAAATGTGCTCCT-TTCATTTTGCTGTCAATTGAATTGCATTTTTTTTTTTTTGCAAAAGATGTGGAAGTTCTTGTAAATCTGTGTCAGAAACTTACATTGGATTCACCAAGCCTAGGGAGATTTGGCTGTGCTTTGTTGGAGCCAATATTTTTCACCCTGGTTTACC s canFam2.chr18 50188574 163 + 58872314 CTCCCACACGCTCCTGTTTTTCCCGCCGAGAACAGAGCTGGACTTTTTTTGAAGT---AAAGATGTGGAAGTTCTTGCAAATCTG----AGATGCTCACACTGGATTCACTGAGGCTGGGGTGATTCCGCTGTGTGTGGCTGGGGCTGACGTTCTCGATTCTGGTCTGCC a score=12873 s hg19.chr6_ssto_hap7 851547 468 + 4928567 AAAAGACATGTCTC-CTTGTTGCACTAATTTCGATCAATCAATAAGTCAATTAGTTCATTTTCATTACATCTCtctgaatcaattgagagataaattgagaagtcaaaacaatgcccaacaacatagcatctttattcctccctcccctaatgacctgggaagcagtttgtgac-cccaaagcacttgcttatatgttattctctccaggaattgaatttactcctcaaagtaataggcacaggcacccatggtcaacacctgtctcctgaagcttatcacttaatggagggaacccaggagtatgattcctccatgcagacagtcagattccaaggagaaaggaggaaaagtccttcaaatgccacattcagccccttcttctggatgccccactcagcaaagtcactTGTGGCTGATGCTGGTCAGAGAAGCCCTTCCAAATGGGAACATGGGTGTAGGAAATATGTG s canFam2.chr18 50188765 458 + 58872314 AAAAGGCATCGCTCTCTCTTCCCATCAATTTCAATAGATCATGCAGTTGGTTAATTAATTTCGAGTAAGTCTTTCTAAGCCAAGTGAGAGATCTACTCAGGGATCAGAACAGAGGCCACTAAAAGAGCACTTTCGTGCTTTACT-TACTGACGACCTGCCGGTGCTCTGGTGTCGCTCACAGTGCTTGTGGGTGCGCCCTTCTCCCCAGGAG-TGGATTCGATCCTCAAACT-GCAGGCAC-GGCACACATGGGCCAGATGTGTC-CTTGTGGTTTATCACTTAGTGGAGAGAG-CCGGGAATACGGGCCC----AGCAGGCAGTCAGATTCCAAAGAGCAGGGGGCAGAAGCCACAGCACGTCCGAGCCCAGGCCCTTCTTCCCAGCACATGCCTTGGC-AAGTCA-TCGTGGCTGACGCTGGCTGGAGGAGCCCCTCCTGATGGGGACGTGGGCACAGGGAATGTATG a score=80362 s hg19.chr6_ssto_hap7 857840 2878 + 4928567 taaagt-agtggtcatgaatgtaaagtgaaacctctcagtgtggctattggctttccttcggccacagtcagctgaacaaatatagggagagagtaggactatagttggatttaaataggaaagcaatttagctgaaagagtgtaacaagtgaaaagggcaggaacattgatgtatgcaaaggagtaa---tagtgattgacgagacagtctaagcttgatagagaactgaagatacaaggggcgtgaggggccacgatgaaTTTGCGGACCTCTCACTgaggaagaaactgagaggaaagtatagaaagataatctatgaggatactgaattcaccaagaatcatcacagtactggagagagtgagaggggatcagggacaaaaatcttcaaggacgaaggaggagcaaagggaaagagaatgatgagagccacaagtggggaggtggactttggagcaaagctgatgacataacagtcaaagctACATTCAAAACTAATAATGACTTCAACAaatctacaaaattcctgacagaaagggttattttccttgttttacagatgatgacattgagagtcactgaagttaaacaattagcttaaggtcacTCCATCAGAGAATGAAATTCTAAACCAGTTCCAATTGAATAGTAGAAATATTAATGA----GAGGGAA--TTACGCTGCCTTTGGCCTTCATACACTGCCAGAGGCACACTACCCTAAAGGGACTTTCCCTCCAGAATTTCCTCTTCCCCACTCTTGGGGACTCCTCTCCGGACACCTTCATGCAAAGTACTAATGATAGGAGTGGGACATCTATTCCCCAGAGCTCCATCCTCTCTTCTAAATAACAGGGAACGTTGAGTCCCCTGTTTTTTCTCTAGTGAGAGCACTCATCAGCATGCTTCCTCCTCTCTAACTG-TGTCC-TTTAGATCCAGGAGGGATATTT--GCTACCACCACCAGCTAATGCTGATTTGCTACCAGCACAAGGCCCAGGTCCTTGTCTGGTCTGTACCCC-ATTACAAGGTTCTCCAGGAACAGACATCACCACCTCTGCCTAGATCCTGAAATTTCACAAAT-----GTAGGTTCTT--TCTTACCCGTTCTTTTTATTCCTCTATTTACAAGCACAATGACACCCACCCCTCGTCTTCTTCCTGAAATACCTGGCTCTGATCCCAGGCATCCATTCCAGAAATCAACACAGCTATGCAATTGCATCTTTTATTAAATACTCCCAACTCCATTTCAAATCCAGAGAATCCAGAGCAGGAGCAAGAGACCAACCTATCATCTGGAAACTCAAGGTGTAAACATTAGTGCCAAAGATT-AGTCATGAAGGTAAGTTGGGTATTACAGTGCCCTACAACACAATGGTCTTGTGCCGAGAGCCACATTCTGAAATACCAAGTGAAGTTTGATGACACATTATATTATATATTTCACAACAGATTTGTCTTCTAGATGTGTGAGGGAGATGATGGGTTTATGTGTACAGGTGCACACATGCCT----ATGTTTTGGGGAATTTGTGCATACATGTAACAAGAATGTTATCTGTGCAGTTTTATTATTGTGTGCCTGTTTTCATGGTGTGGCATATTTGAAGAGGAATGGTTTAGAGCTTGCCAGGCTGAACAGTTATGTGTCCGTGTAATCACCGCATTAAAGAATTTGACCTTTTGTAACTCAACATCTCTAGCCACCATTGGTCTGTAAGCCTGAATGTCACCTCT--CCTACTTTATTCATCTCTGATATGACCCCAA-ATTATAAAATGATCTATAAATATAGGTAAGACTTTGCATGTCCTTTCATACTCCACAGTCTCTAGCACAGTGGATCCTGGTTGAT---------Caaacaggaaggacctcgaagttagtcaaatataagtggaaaacctattaagcatttacaaataatgtggccttgggcaagtaatttaacttcagttactctcctaacatactctataaaataaggcta-ttgcctaatattcaagtgagttaagattagagttaataaatgaaaagagatgtaaatgttcatagcagttgtatcactgcctagcataagaaccccttaaaaaCCTGTTTCTTAATTTGGGAAACAGATATGACGATAGTTAGCATTTATTAAAGGATGACAGTTAACAACtgctatgtgccaggccttgttctaacagcttttcatatttagcccacttaacatatttctattttcatatgaggaaactgaggcagagagaggctaagtaacatacccaaggttttccagctagaaaatggcagagccaggactcaaacccaggcagtctggctgctgagccctggttcttaattatgacattaATGCTTATTCTGCCCAGTGAGGATAAAATGAGTGAAACATAAAATCAAACAGGATGTTTTGGTAGGGAGCAGTGTTTTTTCCCTCTGAA--AAATGAAAAATTAGGTTATTGTGATTTTGTAATTTACAGCAGTGAATATGATGTGAAAAATAAGTTATCCATATAATAATTTATGTCAGGAGTCATGCAGCAGAAAGATTTCTGTCCATCACATAAACTTTCATCCATTACATAACCCATAT-GTTTCTGTACCATTAAGACACTTGGTTCAACAAGACCCTTGGAGAATGAGGTTCCTTTTGTTCCCTGGGGTTCTCTTTTTATTTTATTTTTGGATTAATATTTGAT---AGTAAAGCCAAGgatttgggacaggaaacttagatgacatctagttcaaactccttgatttacatatgaaaaaattgagacagagggaaatgaag--atttccccatatcatataact-----ggctaaagggagctatg-taggtaaaaccaagatgtcctgatattctagtcTACCAGAAAGTGTTCTTTTTTTCTACCCAACT s canFam2.chr35 80209 2699 - 29542582 TAAAGTGAATACtcatgaaggcaaaatgaaacttctcag-atggttctggccttctctccaaccacagtcggctgaacaaatacagggaaagggt-----taggattttattcagataggataatgatttggccaagagaggacaagaaggg----ggggagaggcag-gatgtgtgcagagcagtaactgtcgtgacagaccagggaacccacgctcaagagagcagtggaga--caGGTAGCCTTGGGGACTTTGACAAACTTCCCGACACCTGCC--GGGGAGGATCTGCCAGGAGGGAGTACA----TCATCTGTGTGGATGCTGA-TCTACCAAGAACCAGGATGGGCCGTCCG---GCGAGATGGGCTGAG------------TCAGGGACAAAGCAAAGGCAG---------------TGACCACCACCAGAAGGG--GTGGC-----AGGGAAGGCCAATGACGGAG-------------GGTCAGCACTGAGGATAACGCCACCAGACCTCAAACCTCTTCCACAGACAAGGGCTTTCTCCCTGTTTTC---ATGCTGACCCTGAGAGTCAC--AGGTTCTGGAGCT-GCCCAATGTCTCTCAATCCCAGAACCAAACCCTAAACCATCT------AAATGCTAGGAATACTAGTGACGTGGAGGAAGCCTGGTGCTACCTGAGGCCTCCATACA--GCCAGGGACACATCACCATCATGGGCCTCTCCCTCCAGAATGTTCCCCTCCCTGCCCTGGGGGACTCTTCCCCGGACAACTCCACACAG-GTGCTAATTAAGGTAGTGGGACACGGCTCCCCTAGGGCCCCATCCTCTC-----AACAACAGGGAGAGTGGATTCCCCTGCTTCCTCTCTAGTGAGCG-GCTCATCAGCAT---CCCTGTTCTACAACTGCTGTCCCTTTGGAATCGGGAAGGCTATTTCTGCTGCCAGCTGCAGCTGATGCTAATCTGCTACCACTTTGAGACTCAGGTCCCACCCCTGCCTGGACCCCCATTGCCAGGCTGTCCGAGAATCGACACTGCCACCTCTGTCTGCATCTCAAGGCTCCTCCGCTCTCGGGTGGCTTCTTGTCCAGACACATTGTGTTCATGCATCTGCTGACAAGCAAGAGGGCTCCCATCCTGTGTCCTGTTCCTTAAGGACCTGGCTCTGGCCTCAGGAACTCATTC----------------------------TCTGTCTCTCATCCCTCCTGCTACTATTTCAAACCCAGAGAATCCAGAGTAGAAACAACAGACCAGCTCAGCATCTGGAAACTGAAGGGCTGAGCATTAGTGCCAGAGACTCAGACATGAAGGTAGG-----------------------AAAAAAGGTCTTGCAGATGCAGGCACATCCTAGAATACCTAGTGAGGTTTGGGGGCACATTCTAGAACAT-TTTTACAGGAGCTTTGCCTTCTGGATGCTTCAGGGGAATTATGGGGGGCTGTGTCTGTGTACATATGTATCTGAGTAGGTATCTGGGAATGGGTGCACA-----------GGTATTGTTTTTGTGATATTATTATCATGTGCCTGTCTGCAGGGTTTGGCATGCTTGGAGGGGAACTGTTCAGGGCTTGCCTGGCTGAATGGGTGTGTGTCTACGTGATCACAGAATTAGAAAACTTGACTTTTTAGGAC--AACATCTCTAGC-ACCACTGGGCCATTAGCCCAAATGTCAGCTCTGGCTTA---TATTCATCTGCAGTATGACCCCAATGCTACAGAATCATCTAGAAAGCAAGATCAGGATTTGTACGTGCTTTTATCCTCCACAGCCT--AGTATATTAGAGCCTGGCTTATAAAAAAAAATaaaaagcaaggttcttagaattagcgagatttgggttgaaatcccaataagcatttacaaacagtgtgatcttggccaagttatttaacctctactacccacctaccttactctctaaaataggactacttgcctcacTTTCCAGTGAATAAATCCCAAAGTTAA---ATGAAAAGAGACACAAACTCACACACTGGTTCTGCCACTGCCTGATGTAGCACCTCTCTGAAAACCG--CTCCTGATGTGTGAAATTGGGATGataagagtcagcatttactgaa-------------cacctactctgtgtcagccactgttctaagagctttgggtgctcaacccacttaa-gcaattctacttccaagtgaggaagctggcccacagagaggttaagcaacatgcccagggttgctcatctaggaaatgacagagccgtgactggaactcaggcagtcggacgccttgacccttgttcttaatca---cATGAACCCCTGTTCTGCCTAACAAGGATAAACTGAGAGAACCATA----TAAGCATGATGTTCTTTGAGGGGAAAAGAGTTTTGCCTTGAAAATAAAAAAAAAAAAGAAGGGATTATGATTTTTGAATTCAGAATAATGAATATGA----------AGGTAATCTATTTCATGCCACCTGTCAGGAAACATACAGTAGCAAGATTTCTCTGTGATGC--------TTGGTCAACATGTCAACTATATAGTTTCTGTGCCATTAGGAAATGTGACTCAGCATCACTCTTC-AGGATTAAAAGGCTTCCGTGTCCTG----TCGCCTTTTCATTCATTT---GACAAATATTTATTGCAAttagagctggagggt-gagccaggagccagggaggtcatctcattcagactcctccttttacacatagaaacacagagt--gagggaaatgcagtgacttctccatatcaaataaccagacaggccgaaagcaattctgctatgggggacccagggctcctggc-ttctagctcagca------------ttctgctagacgact a score=1724 s hg19.chr6_ssto_hap7 860760 77 + 4928567 TCAGTGGGAGGGGCATGGACGTTGGGAGTAGTC-------TCTATTCACAACAAATTAAAAATCAGTAATCAGCCGTATAATGG s canFam2.chr35 87367 83 - 29542582 GAAGCAGGACCGGCATGGACATCGGCAGCAGCCAGGAAGAGGGATTCCCCACAGATTAGCACTGAGTAGTCAGC-ATCTAAagg a score=819 s hg19.chr6_ssto_hap7 861278 209 + 4928567 ttgcataaataaacacagagtacctgaaacaacggaggtga----tcattctg-cctaccgagtgttggccacgccaagcttggagtgttgctcttattcttagg----------------------------------------gagtttattttTAAGTA-----ATCTCATCTGTAAA----------TGGGATTACAATC-------------------------------------------------------------CACAAAC-------------TGACCTTG-------------TATATGATTCCA-------------------------TTCCTTCTCCCAGCCCAGCCCC--ACACTCCAAGGTTTTC s canFam2.chr35 87450 383 - 29542582 ttatactcacagaagtatggtccctgaaacaaagaaggtgagggatagctctaatctaccaagtgttggttctaccaagcctggggtattgcacttattcttaggcactgcaccctttccaagatggGGAGAGAGGCTCAGGGGGAAATCTGTCTTCAAATATCTGAATCTCAGTTTTCTACTCTGGCTCCTAGGAATACAATCAGAACCCGGGAAgcagcccaaaaagcagatttgggaataagacaggcctgactgcgtgtcccacaggccactgactagctgtgaccttgggacaatctcccctttctgagtctaagtttgctcatctacaaagtggagatTCTTTCTCACCCCCCCGCCCCCGGCACCACAGAATTTGC a score=17042 s hg19.chr6_ssto_hap7 861487 312 + 4928567 CCTTTGCTTATAAGGGGTA--GTCACCCTTTTTTATTTCGACCTTCCAAACATTCTGGGAGTTTTC-CTCCTTTAGGCCAACTACA--GCGCAGAGGAGCGCTTTCTCCTGCTGGGTTTCTCCGACTGGCCTTCCCTGCAGCCGGTCCT-CTTCGCCCTTGTCCTCCTGTGCTACCTCCTGACCTTGACGGGCAACTCGGCGCTGGTGCTGCTGGCGGTGCGCGACCCGCGCCTGCACACGCCCATGTACTACTTCCTCTGCCACCTGGCCTTGGTAGACGCGGGCTTCACTACTAGCGTGGTGCCGCCGCTGCTGGC s canFam2.chr35 87991 316 - 29542582 CCTTCGCTTGCAGGAGCTAAAGTCACCCTTTACT-CTGCATCCTTCCAAACACTCTGGGAGTTTCCTCTCTCACAGGCCAACCACACAGCACGGAGGAGCGCTTCCTCCTGCTGGATTTCTCCAACTGGCCCGTGCTGCAGCCCACCCTTCTTCACCCTCATCCTGCTCTGCTACCTCTTGACGCTGGCCCGCAACTTGAGCCTCATGCTGCTGGCGGCGCACTACC-GCGCCTGCACACACCCATGTACTACTTCCTGTGCCACCTGGCACAGGTGAACACGGGCTTCACCACGAGCGTGGCGCCTGCGCTGCTGGC a score=78835 s hg19.chr6_ssto_hap7 943765 1007 + 4928567 CTTTTCTTTTTTACTTTTTTTTTTT---TTTAAACAAGAAGTTTATTTAAACAACAAGACGCTTGACTTGAAGGGAAAACTATCTAGGATTCTTTTTTGTTTTAGAGTAATTTATCCCTACTTAAAGACAGATTGCTCTGCATGTAACAGCTAAGTACAAAAAAGTTATAAAATTGTCCTTGGTTTTACAATGATAAATGAAAAACATTAAAATTCTCCAATTGAACAAGGTATGCAAGGATTTTTATGTTGTTGTTTTTTTGTTGTTGTTGTTAAAACAGTGAGAGCAAAATAACTTACTGGAATATAAAGATAAGAGCTGAATGAGCATGCCACTAATGGAGAAAGGGGGTATTTTCACAGAATCAGTATTTTCCCCC---CCGTCTCCACTTGATGTCAATCAAAACATACCATTGGCTGTTTAGTTTAAAAAAAAAAAAGTAATATGCTTGTGCACATATACCAGTTACTTTATGTACAGTAAAGGAATGGGGAAGGGGGAAATGAAAGAATAGAGAAAACTATACGGTAGTAGTCAGGATGTGGTGGAAGCAAATTGCAGTTTTCTAATTGAGAATGTAATCTTGGTCTTTAAAGAACAGAGTTCTGGAGTAAAGAAGCAGGTTCCCTTTTCAGTAGACACCTCCCGTCTGCTGTTGGAACACATCAATTGTATCTTCATCCTCCATTTCCAACTGTGCAGGTGTGTCTGTTTCATTG----GTTGCCCGTCGAATCGGAATCTGATCTGCCTCATTGACAATCCCTGTCGTTCACAATAGGCTTTCATTAGTTTACTAAGTGGTGTATGCCTCTTAATCTTAAACTGCACCACAGAACCATCCTGCCCCGCCACCTTCAAATTAATATGATCGTTGTTCTCAGTCTTGACTCCTTCCTTGGGCTTTTCTTCGGCCATGGCGAGCGCCGGAGTCTCCTCAGCTGCCGCTTCACAAAAGAGGTACCAGGTCCGCTCCAAACGAGCACACAAGCAGCACCAGGAGCGGCAGAAG s canFam2.chr12 39224826 995 - 75515492 CTTTTCTTTAACAATTTTTTTGTTTCATTTTAAACA-GAAGTTTATTTAAACAACAAGACGCTTGACTTGAAGGGAAAACTATCTAGGATTCATTTCT--TTTAGAGTAATTTATCCCTACTTAAAGACAGATTGCCCTACATGTAACAGCTACGTACAAAAAAGTTATAAAATTGTCCTTGGTTTTACAATGATAAATGAAAAACATTAAAATTCTCCAATCGAACAAGGTATGCAAGGATTTTTATGTTGTTCTTTTTTT-------TTGTTAAA-CAGCGAGAGCAAAATAACTTACTGGAATATAAAGATAAGAGCTGACTGAGCATGCCACTAATGGAGAGAGGGGGTATTTTCACAGAAACAGTATTTTCCCTCATCTCATCTCCATTTGATGTCGATCAAAACATACCATTGGCCATTTAGTT-----AAAAAAATGCAATATGCTTGTGCACATACAC-AGTTACTTTATGTACAATAAAGGAATGGGGAAGGGGAAAATGAAAGAATAGAGAAAACTATACTGTAGTAGTCAGGATGTGGTGGAACCAAATTATGGCTTTCTATTTGAGAATGTCTTCTTGGTCTG-GAGGAACAGAGTTCTGGAGTAAAGTAGCAGGTTCCCTTTTTAGTAGACACCTCCTGTCTGCTGCTGGAACACATCAATTGTATCTTCATCCTCCATTTCCAACTGTGCAGGTGTGTCTGTTTCATTGATTGGCTGCCCATCAAATCGGAATCTGATCTGCCTCATTGACAAGCCCTGTCGTTCACAATAGGCTTTCATTAGTTTACTAAGTGGTGTATGCCTCTTAATCTTAAACTGCACCACAGAACCATCCTGCCCCGCCACCTTCAAATTAATATGATCGTTGTTCTCAGTCTTCACTCCTTCCTTGGGCTTTTCGTCGGCCATGGCGAGTGCCAGAGTCTCTTCAGCTGCCGCTTCACAAAAAAGGTACCAGGTCCGC----ACCGAACACACAAGCAGCACCAGGAGCGGCAGAAG a score=3699 s hg19.chr6_ssto_hap7 944786 53 + 4928567 AGTGGACAAGGGGAGAGGGTGCGCGCACGTCGTGCTCTCCCTCCCTCCACCCT s canFam2.chr9 56123054 52 - 64418924 GGTGGAGGA-GGGAGAGGGCGCGCGCACGTCGTGCGCTCCCTCCCCCCACCCT a score=2746 s hg19.chr6_ssto_hap7 945182 60 + 4928567 TGTTGTTCAACTTTTATTCAAATGTTTTACAAGTGTCTCCTCTATAAATCATTTTTAATT s canFam2.chr35 29259707 60 + 29542582 TGTTATTCAATGTTCTCTCAAATGTCTTACAGGTGTTACCTTTGTAACTACTTCGTAGTT a score=1477 s hg19.chr6_ssto_hap7 945710 37 + 4928567 GAAAATGACAAATCTT--ATTCATTTTAGTTCCCATACt s canFam2.chr35 29259791 38 + 29542582 GAAAGGGATCAATCTTTGGTTCATTTTA-TTCCCATCCT a score=14097 s hg19.chr6_ssto_hap7 946117 380 + 4928567 ACTTCCTTTTCTCTCTTCTGCCTCATCTTCCATCCATCCCTGAGAGCATATAGCCCAGAATTTAACACTCTGGGAGCCCTGAAAACATATTAACCAACGTAGTTCACTTGATTGATGATcaggtagatgctaggtacattttgggagtatctcattaaattctcacctaaccacacagagtggatattcatgttct--atactgagcctagtaaactaccatttaaagaaagtaagaagcaaatcagaggt------------------cacacagctataaagctgacagagccaacatttgaacttaagttcgttaccctattttcaaattctttctactgcaTTGAGAGGCTTAGTTTTGAGGCACTTCTCTCACCCAACTCCCACTCCAAGTCTTt s canFam2.chr35 29259832 397 + 29542582 ACTTCCCTTCCCGTCTTCT-CCTCACCTTATGCCCAACACTGAGAGTGTAGAGCCCAGAACTTAATAGCTCACATGCCCTGAAAACATATTAACCAAAGTAGCCCAGTTAAGTGCTGGTTGGCTGAGTGCCAGGTGCTTTCGGAGGGCATCCAACTGAATTCTCGCCCAGCCACACAAAGTAGATG-TAATGTCCTTAGTATGCAGCCCCCTAAACGGTGATTTGGGGAAA-CAAACTACAAATCAGAGGTTCCTCCCTCTCCCCTGCCCCCCCCACTTTGAAATTGACAGACCCAATATTTGAACTCAAGCCTTGTAGTCTGTTTCCAAATTCTCTCCACTGTGTTCAGAGATTTAGTCTGAAGGCCTGCCTCTGACTTGGTTTCCACCCCGAGCATCT a score=5077 s hg19.chr6_ssto_hap7 946867 335 + 4928567 GTGATCACTGGGTGAAT-----------------------------GGAAGATGTTCATGTCCTCTTGGGTTAGGATGAAAGACCTGTCTTCTGGGAGAGTTTTCTGTCCTGTAACAGCTCTTGCTCTTTAGAAAAATGTATAGGGCAAAGGTTTATTATTCAAACGTGAAGTTATTTACACTCTGGGATTCACTCTGGCTTTTTAGTGAGGTTTTGAATCCTTTGCATCATATTTAATATCACTAAAATAGGATATTTTTGTGAAACTGTTTGATCCTTCCCCTCAGTTTCCATTTGTGTGTTCTCTTTCTTCCCGTCTTGATAGGCACAGGCACTCAGAATCACTGGGCCAGAAAGAAGTAA s canFam2.chr35 29260416 305 + 29542582 gtgagtagtgggtgggtgagggtgtgtgtgagcatgggtgcgtgagggtgggtgGTCACGTCCTCTTGCATCAGGGTGGACGTCCTGTCTTCAAGAACGGCCTTCTGTCCTGC-ACAGCTCTTCCAATTTAGGGTCCCGTGTAGGACAAAAGCCTCAAATTCAAACATGGGG-TATTTACAGGTCAGGCTTCATCCTG-------------------------------------CAGCACCACTAA----------------GAGTCCTGTTGACCCTCCCCTCCTGCTGGC--CTGCGGGATCTCCTCGTCCTGGGCTC--CGGGGACAGGCTCACAGCATTGCAGAGCCCGAAGAGGGTCA a score=1495 s hg19.chr6_ssto_hap7 947518 63 + 4928567 AGAGTAAGGGAACATCTTTCGTTAATAAACCCTCTCTATTGCTCCCCACACACAATCCTAGTT s canFam2.chr35 29260721 60 + 29542582 CGGCTAAGGAAGC--CTTTCTGCAACAAGACCATCCTG-GGCTCCCCATGCACACTTCTAGTC a score=11375 s hg19.chr6_ssto_hap7 947928 447 + 4928567 caGTTGTACATTCTTGGCAGTTCTGGCCTTGGTTTATTGTGCCAATAAAAGTAAGC--TCATGAAGCTATTTCTATCATGTCTTTACAGGCATGTACAGGTGAGCCCAGTTTGGGAGTCACAAAACTTCAGTGAAATTAAAAAGCCACACTATGAGTACCTGCACTAGCACTTACCACTCTCACACACAAGAATCCCTGAGGCAGTGGGGATCCTACCCCTGTCTCAGGAGTGCACAGAGCCAATAACCAAATTACAACATTGACATTGTGAAGTTGCCTCTAGAAATAATTTCTC------AAT-----------AAGTACACCTTTATATAATAAGTGAATGAACACAATGTAATTAAATGCTAGATTAACCTAAGAAACAAAAAGGAAAATAGCTTC----TTTGTCCGTTCATCTACAGGATAATGAGGTCATGTTAAAAGACTTAGAAAAGGTTCAGTTCTCCTg s canFam2.chr35 29260781 445 + 29542582 CAGTTGTACATTCTTGACACTGCTGGCCTTGGGGCTTGGTGCC--------TAGACCGTGATAGAG-TATTTCTAGGA-GCCTTTACAGGCATGTATAGGGAAGCCCAGGATGGACTTGAGCAA--CTCAGAGAAATATAACAGCCACATCCCTAG-GCCTGCTCTGGAGCC-ACCTCCCT-ACCCAGAGGATGATCTGGGTCATGGGGGAGCTT------GTCTCACACCTGC-TGGGGCCAAGTGCCAGAATACAAAATTGACACCAC-CTGTTGCTCCTGGAAATGATTTCTCTTCTATAATCTCTATTATAGAAGGGAGCCCTT-CATAATAAATAAATGAACACAGTGTAATGAGATGCTA-CTTAATCTGAACAACAGAAAGGAAAATAGTTACCTAGTTTCTCCCTCCTTGTAAGGGTATATGAGGTCAGGTTAACAGATTTAGAAAGCATTCCGTCCTCACA a score=13794 s hg19.chr6_ssto_hap7 948695 383 + 4928567 AATGAGCATTTTGAAGATCTCA----AAATAAGTATTATATTTAATTAAACGT--GTAATTAAGTATATACTGG-TATGAATATCTACA---------AATAATTATTCATACTAATCT-----GAAAAACGTATGCATCATAATGTGTGTATATAATTGGT--------TGCTAGGGGATTTGTTTGTTCATTTTGCTGCAATAGATTTCTGTCTCTCGTCATATTCTGTTCAAGTACCTAAAATGATTGCTCACTTATTCGAAGC--------ACACTAATGAAATAATACTCAGAGTAAAAGGAT-ATATCACCCAGATTTTTCTATTAGAAGCTACACAATACTCAAAAATCTATCATTTAATATGTGTATGCAGGTCTAAAGcccataataagcaaaaatatattttcacgttaaa s canFam2.chr35 29261271 418 + 29542582 AATTGGATTTCTAAAGACGTCACAACAAACAAGTGTTATGTTGAGTTAAATATATGTAATTACGTACCTACGAGATATGAATATTCATACCAGCCCAAGAAGGCTATGTATCTTTTTTTTTTTCAAGAAACATATGCATCATAATGCACGTATGCATTTGGGCAGTGAGATGGTAGGGGTTTTGTCTGTTCATTTTGCTGCAACAGATTTCT--CTCTCATTATGTCCAGTTCAGGAATCGATAATGATTGTTCATTTATTCAGAGCTCACTAGCACACTATCCAAATAATTCTCAGAGAAAAAAAGTCACACCACC-ACATTTTTCTATTAGAAACTACAGAAGGCTGAGAACTCCACTATTTGATACATGTGTACAgggctaacatccgaaataagcacaaccctgtctctgcagtaaa a score=10572 s hg19.chr6_ssto_hap7 949078 282 + 4928567 tgtatggctatttacactagatgaggtaaagaaagactataaatagcttcacatctcgttttgtcacagaatgaatgcaagtcaggccaggctttgccgccaaatgagtta----caaaattttggttttcagagtattgtgaattttggaattgcagaaaaggatatgtgaaactg--TTTATAAACATGAGAAGATGTTTACAGATAGATGTTTTAGAAGTCAAATGAACAAATCTGAAGCAACAGACTAGAAATTCTATTCATGGAAATATGATAAAAATGCCAG s canFam2.chr35 29261877 246 + 29542582 cacgtgattattaacattaggtgcagtaaataaagaccataaatagcttcacatctgatcatcccacc----------------------------------aatgaggtagaaacaacatttttatttctggagcagtgtgggttttggaa--------AAGGGTGTGTGGAACTGAGTGGACAAATACGAAAATTTATTTATGAATGGATGTTTTAGGAGCCAAGTGAACAAATCTGAGACAACACACTAGAGATTCTATTCATGGAAATACTATAAAAACACTAG a score=14069 s hg19.chr6_ssto_hap7 949715 709 + 4928567 AAGGATCTCCATAAAGGCTATGTATGAAAACCTGACCATGTCACATCCATGACCCTATTACAGCAGGTCAGATTAATCTTACCCTAGTCCAGAGAACCACGGGAACCACT-GAGTCCTAGT-GGAGGGAAAGCCTGGAACAGATGTGAAGCAAGCTTGGCTTTTAGCAATTGAGAGTAAACAAACACCTGCTGAGTTTACTCTTCCTTGCCTGTCTTTCTAAGCCATCACTCTGAAGACCTAAAAAGCAGACATGACTCATACACACCTTCAGATGCTTTCAGTATTTGTTACACCTAGATCTGTGCAGAAACTGAATACCTTATTGGTGCataatttacaaagaattctcacattagctcttctaattctttctgttgtttctatatgataatatc----tccatttgtcagataggaaaactgaagctcagaaagtttgaatgaacttcataagatcacacagccaataaataccagagcttggcctcaaagtcaagtctcaggtccttctgcccttcactaacagtgctccagccatggtggtctgactgctgttctttaaacttcctta---actttcaactcagaaaccaaacacacccagctccctctgcctgggcgtggtgctctgttcagcctcctcacccca---cacc--catgttgctaacagcttaaatggcacctcctcagtaaagcctcccctgaattccccagactta s canFam2.chr35 29262123 606 + 29542582 GAGGATCCTCATAATGGCCCTATATGGAA---------------------------ATGACAG--GGCAAGATGGGCCCCGCCCTA-TCCAGGGGCCCAGATGGAGGACTCGAATCTGAGCAGAAAGGAAAGC---------------------CTCTGCTTTCAGCGATCTAGAGCAAA-GAACAGCTGCCGAGTTTTCACT--CTTCTCTGTCTTTCCAAG---TGTCTCTGATATTCTGAAAGTCA-ACATGATTCAT--ACACCCTCAGAAGCTTTCAGTATTTATTTCACTTAGATCAGCACAGAAACACATTTCCTTGTC------TAACTTACAAGCAAT--TCACTttacctgccttaatcctcccaaccatgtc--tccgctgctatcatggtccattt-tcagatgagaaagctgcagctcagatgct----------------ggaccaacctgcccaaacttacctg--------ctccagccccgatgtctggtcctcctccctcttgctcatggtgctcccaccacactggcctgattg-tgttcttggaactcacccagatactttcagctcagggagtaa----------------cagcctggacat-gtgctc--ttcagcctgcccatcctagggcaccatcacctcagtaactgctcaagt--cacctccccaaggaagccttcccagaatttctcacactta a score=4840 s hg19.chr6_ssto_hap7 951018 310 + 4928567 ACAAAACTTATCTCAGTGGTAATTAAGGT---AACTGtggaatcgtgtattta-catttgccttcctgaccagaccataaactccaggagggcagggattttgactatgtggctcattttatccc-------------------------------------ACTAAAAGA-------GCTACATATTTTCTGACTCAGAGATGAGTTTCATTCCATTGTACAGAATGATCACACCAGTTTCCAAGTCTATTAATCT---AGCGGTCTCTGTTGTTTGTTGAAGACCTA-CTAGGTATTGGTAAAATGGGTTGCTTTGTTCCATGGGCCATAATAGTGACACATTCTAAACACATTTAAGTC s canFam2.chr35 29262760 350 + 29542582 atagcactctgctcagtggtaatttctttttgaagtatacaaccctttctttaatgcctgccttcctaagcagaccctgagccccaagggagcagggcccccaagccaggtgctcacagcctccccaccgcagcatagtgcctgccacctgcttagaagcttaatgaaagattAAGCAACAAAACATCTTCTGACTCAACAGT---CTTCACTCCGCCTTTAA-------CTCTCCTAGTCCCAAGTCTGTTGACCTCCTGCTGGCCTCA--TGTTTGTCACAGATCTCTCCTAGCATTGGTGAAGTGAGGTGCCTTCTTCCACAGGCCATACCAGAGACACATTGCCCACCCATCTACATC a score=1991 s hg19.chr6_ssto_hap7 951982 130 + 4928567 CATGAGTATTTTGATAGCATTGCAAGTATAATCTCTGGTGCATGCACAAATTCTGCTCCACATAGCAGCGCTAATGGTGGCCCACATCGGGAATAGGAGTAGAGCAAGATGTTACCAGGAAGAGGGCCTT s canFam2.chr35 29263113 117 + 29542582 CATGAGTCCTCCAGGA-CATTATAGATCTAGTCTCTAGCGTG----CAAGTTCTCGTCCACGGGGCAGCACTAACAA-AGCTCATAGC----CTCTGTGCACAGCA---CATCACCCAGAGGATGGCCTT a score=11072 s hg19.chr6_ssto_hap7 952455 420 + 4928567 GCTGCTCTTAAGAAAGTACTTTTCCAAAGATCATTCTCCTTGGTCTTATCTTAAGATCCTGCTATGAAATAGGGACACGGGTGGAAAATTTTCACCTGTGCCTGCAGCAAACTTTCATTCTGTCTGAATAATTATAAGTAGGATGGGGGAGGGGAGAAGAAAAAGAAAGA------GACCATGATCTGAAGAACCTTA--------ACT-GTTCCCCTGTTATCCCTGGTTACTGTCAAGCAGCTAGCAGGCTAGGCTAGGTGGGGTATCTTCTTTAACTCTACTCCTGCATTAGCTGTTCTAAATCCTAGAACTCATGCCCTGTTTGAAatttctttccctatgcccaactcaagtgatgccatcctattttctattttccaccatgggaaaaatggaaaataacaggagaaATGTATTAAGAAAGCATTCTTG s canFam2.chr35 29263230 400 + 29542582 GGTGCTCTTCAGAAAGTGCCGTACCAGA-AGCAGCCTCTCTGGTCCTATCCCAAGATCCTGCTAGGAGGTAGGGGCAAAGCTGGAGAATTTCCAGCT-TGTCGAGAGCAGACATGCATCCTG-CTGGATAATTACAAGTAGGAGCAGGGAGGAGACAAAGGAGGGACAGACAGGTGGACCAAGAGCCCTCAGACCTCAGGAAAAGGACTGGTGGCCCCATTGTCCCTGGTTGTTGTCAGGCAGACAGCCAGT-------GACGGAGCTTCCTCCT----CTTTCTCCTGCGCTAGATGCCCC-AATCCTAGATCTGAGGCCATGCTTGCATTCTC-TCCCTTAAACCCAACCCGACTGAAGCCAT-------------------GGTGGGGAAATTGTCCAATGATACGGGTAAAACAGGAAGCAAGTGTCCTTG a score=5503 s hg19.chr6_ssto_hap7 953197 187 + 4928567 ACTTCTTACCAACATTTTACAAAGAAGATTGAAGGTAATGTGGGTTCTA-------------AGACTGAAGAGTACAAGGTAAGCTGGTGGTTAATG--GGGAGGAGGGATGATGGATGAACTGGTCAGGGAAGAGGATGAAATGGCTCAAAATAGAGGTACAAATAGAATGGGCTGGGCTCCTCCAACCATTCCTTGTGAt s canFam2.chr35 29263630 184 + 29542582 ACTTCTTACCAACATCTTACCAAGGGAATTG-GGGTCACATGGCTTCTACTCTTGGGGCCTTAGGAGGAATAATGCAAACTAC-CTGGCTGTTAATGTTGGCAGCA-------------AAGTGTTCAGAGGGGAGGACAAAACAGCTCAA---AGAGCCACAACGAGAAGGGGCTGGGCTCCTACGACCATTCCCCTTGAG a score=2272 s hg19.chr6_ssto_hap7 953919 38 + 4928567 TTAACTCCTGAGTGATTTTCTTCTCTGGACCCCAAGGA s canFam2.chr35 29263815 38 + 29542582 TTAACTCCTGAATGACTTCCTCCCCTGGGCATTGAGGA a score=2485 s hg19.chr6_ssto_hap7 954489 48 + 4928567 TTTTTCTGCCTGTGTATTGATATTATTCTTAAGGGGCTCATAAGAAAA s canFam2.chr35 29266342 48 + 29542582 TTTTCATACCGATGTGTTGACATTGTTGGTAAGTGGCTCCTAAGAAAA a score=3300 s hg19.chr6_ssto_hap7 954839 74 + 4928567 TATTGTTATTTAATATGACCTGCCATAACTACCATTAAAAGTAGTACAGGTGTGCAAAAGAAACTTATCTGGCT s canFam2.chr35 29266390 71 + 29542582 TATTACTGGTTGATAT---CTCCCATAACCATCATTGAAAGTATGACAGGTGTGTAAAGGAAATAAAGTTGGCT a score=1727 s hg19.chr6_ssto_hap7 955226 116 + 4928567 TAAGATTTTTTTCTCATTTAGTCAATAAATATTTATGGAATAGGGCAGTTTGGGATCACACACATGAGCTAAGCATGATGTCAGCCTTCATAGCTCCTACAATGTGGTATGGTGAt s canFam2.chr35 29266461 83 + 29542582 CAAGGTTTTTTGTGTTTTGATT---TTTGTTTTTGTGAAA------------------------------AGACATGATGTCAGCCTTCATAGTCTTTACAGTCTGGTAAGGCAGT a score=8160 s hg19.chr6_ssto_hap7 955596 201 + 4928567 TTTAAAACTGGAATACAGAAAGA--GAAGAAGAAAGTCATGCTCCATCTTTATTATTTAAAAATCAGAACAGATACACATATTTGTTGTGAGCACTAATTAAAATATCCTTAAAGTTTCCTTACCTTGGAGTGGAATTATTTGCATATGTATACACATGATGCTGACTTTAGAAGAAAAGTTACAAGTTAAAACACGTTTGAT s canFam2.chr35 29266544 194 + 29542582 TTTAAAACTGGAATGCAGAAAGATGGCAAAATAAATCTATGCT--GTTTTTATTATATAAAAAACAAAAC--ATACATATATTTCTTATGGCCAGTAATTAAAATATC----AAGTTTCTTTAGTCTGGGGTGGAATTATTCACATGCTTAAGCACTCTGTGGTAACTGGTATAG-GAAGTTACAATTTAAAATAGGTTTGAT a score=2768 s hg19.chr6_ssto_hap7 956471 60 + 4928567 TGACCATTAGATGGTACCAGTTACAAGGCAAACTTAGGTCCCTTCAGAAACTGAGCATTT s canFam2.chr35 29267272 60 + 29542582 TGACCGTTAGATGGCGCCAGTGACCAGCGAGCCTTCCATCCCTCCCTAAATTGAGTATTT a score=3911 s hg19.chr6_ssto_hap7 956554 97 + 4928567 GTTTGTTTGTAACTTAAAC----------AACAAAAAAATCATTATTTTAAAGGCCATATGCTCACTGTGAAAATATATCAGGTGGTGTATGAAATAATAAGTAAAT s canFam2.chr35 29267563 107 + 29542582 GTTGGTTTGGGACTTAAAATTaaaaaaaaaaaaaaaaaaaaaGGATTATAAAGACCATATACTCACTGTCAAAATATTTCAAACAGCGTAAGAAACAAAAATGAGAT a score=7176 s hg19.chr6_ssto_hap7 958458 366 + 4928567 CGCCTTATTCTCCGCCCCCAAAGGCTGCTGGCAACCAATT---CTCGGTGGCGAAGTCGTGACGTCAGCTGTTGCGGGTCAGATTGGGAGAGCTTCCTGGTCCTTACCTAGCAAGATTCTGCCGCTAGGT-GGCGAAAAGCGAAGGGGCCAAAGAAATGGAAAGAAGGCGAGGAA------AAGCGGGAGAAGATGGGGAAGGAAAATGTATATTCTTGTATCATCCTACAGCTAGGCAAAAATATTAGGATAATGTGGCCTAACCTCCAGTTCTATGTT-Ggctggaaaatccaggaatgggaagctcactcccgtagttcccactcattcccaccacggttggacagctctgaaggagggaaaattctttctttt s canFam2.chr35 29269487 347 + 29542582 CGCCGCCTCCTCC--CCCTGGATGC--CCAACAACCAATTATCCGCGGCGGCGAGTCTGTGACGTCAGC-GTTGCCGGGCAGACCAGGGGTGCTTTAGGGCCTCCACTTG--CGGATCAGGCCCTGGGGTAGGAGAACTGCGAAGGTGCCAGGGGCATGGAGAAGAGGCGGACAAGACCCAAAAcggggggcgggggggggggggAATTTATATTGT--------------GCTAGAGAGGACCAC-AGGGTTACCTAGCCTAACCTCCTGCTGAGTGTCCAGCTATGGGAAGGAAGAGCGGGAAGCCCACTCTC------TCTGCCCATGG--GCCCTGGGTGGGCTGCTCCAATGGAGAGAAGGTGCCttttttt a score=7325 s hg19.chr6_ssto_hap7 958824 392 + 4928567 gagctgaaatctgccttcagagtcttgcacccaactgttctaccccacggggacctacagaacagcccaaagcctcttacgcaggacaacccATAGCAGTTTGATTAAAATCAGCGCAAACCCATTCCCATTTGGTGAGGGGGGAGGGGGAGGGGCAAGCCTCAGTGCCTGACTCACTTGACTCACAAGAAGCTGAATGTTTTTCCTTT-TGAAAGATAAAAATATTGGTGAATCTCAGACTAACAATAGGGAATACACAAAAATG-GAAAAAATGTTGATAGATAAAATTTAAACCTTTGGTAGAACATAATTAGTTTTTTGTTCTCTACATTTTTCCATATCGTTTCTAATTTTTCTACACTGTATGTGTTACTTAAAGAAATAAACCAGTA s canFam2.chr35 29270212 297 + 29542582 GAGagaaggtttctcttcata---ttgaattgaaatctgccttccCAGGGTTGCTTGCAACAC----------CTCTCCCACACAACAACCCAT-------------------------------------------------------------TTATCCTAAGTGCCTGATTCACCCGATTTATAACAAGCTGAGTGCTTTTCTTTAATGAAAGAGGAAACTATGGGTGAATTTCAGAATAGCGACAAGGAAGAAACAAAACTGAGGGGAAATGTTGATGGATAAAATGTAAAC-TTTGGTAGAACAT-----------TGTTGTCCACATTCTCC---------TCTATGCTTCCTCCACTGT--GTGTCACTTCTGTAAGCACCCCAGTC a score=22913 s hg19.chr6_ssto_hap7 959860 848 + 4928567 GAAAGAGCAGCCCCTGGCTGCATTCACCACAGCACCCATGCTCACACATGCTACAGGCGCTCACTTGCTGGG--AGCTGCCTCACATTGATTCGGATCAGTGTTCTCATTTCTCCGACCTACCTAGGAAGCATCTGGCTAAATTGATGTAAATTAGACATTTTATAGTCTATCG---GTCATTGAGCCTCAGTGGAATATCTAGACCAATTTAAACACACAAATATTATGGGAAATAGGGCCACAAAAGTAGAAAAGAAAACGT-GAATTCCTCTTTATATTTATGCCACTAGAGGGAGTTCCAGAAGAAAATCAC-TGCATGTAAGGGCtaatgactgtatttactgagtggttactgtgtaccattcacagttcacagggactcattcatgtcattctcatgataaccctgatgaagtggatgatattattccctcactcactaaggagaaagccagggtacagtgaagtatacaacttTGTGCAGGGCAATTTATCAATATTTATTGAAATTACCAAAAAACATGCTCTCTGAACAAACTATTCTACCAGTGTAGAAAGcagagtaaacttcatgggtgagtgaccagggcagtcacacaagggccccatgcttagaagggatactgtgtttgggttctaaagctctgtggttcctgtcttgaaattcttaataattttatctttcaatttgtgtcttat-aatgaagtccgatgagaaagcagaacatgggctagagacttttggagcctggctcaagcgaggtcctgctccccatgcctcccagcctccccaggactggttttcagctgccggctccaccaccttctgTGCAGGCTCGCTCCCAGCAGGGG s canFam2.chr35 29270513 740 + 29542582 GAAAGGAACACTCCCGACT----TCACTACAACACACATGCTCACA--GGCCACAG-TGCTTGCTTGCTGGGTTAGCTGTGCCA----GGTTTG---CAGTGTTGCCATTCCTTCCACCTACCTGTGAAACATCTGCTTAAATGGATATGGATTAGACCCTGTTCAGCCAGTGGATAGTCACGGAGTCTCCCGGGACTATTCAGACCAACTTAAACACA--GATGCTATGG-AAAGAGAGCCACAAAAGTGGAAAAGGAAACATCAAATTCCTCTTAATATTCACACTCTGAGAGGCAGTCCCAGAAGAGAAGTGCGTGCAGGTGAGGGTTAAC-ACAGCA----CAGAGTGCACAGTGTGTGT-GGTCACA-TTCACAGGGAGTCACTCCTGTAATTCTCAGCAAAGCCCTCCAGAGGTGGCTGTTAG-------------------------------------------ATATaccttggtgcagggcaatctgtccatgtgtattaagatgacaaaggcacatgctccttgaactagcaacttcaGCA-TGTAGAAGGCAG--TGACCTTCAtgagtactcggccaggacacc---------gctctatacc--agaaggaggccgtgtctggcttctcatgctctgtg-tcatcgcctggagattctcagccatcttatctttccatt-gtgttttgtcagtggagtccaaagagatcaca---------ctgggg--cttggaggccaggctcaagctccatcttgctttccatgcctcccagcgcctgcaggactggttttcagctgcct----------------------cccactcccctCAGGAG a score=7323 s hg19.chr6_ssto_hap7 961598 182 + 4928567 caagaatcttgtctgccttgctgaaagttttataatcagggcctaatataaagtatgacacatagcacttgcttttaaatatgtattgatttaaattaatTGAGTACATTTTTGCTTCATCCTAGTAAAAATAGGTATTTaa-aaaactgaaacagtctaaatgtcttgggatgcta--cttaaa s canFam2.chr35 29271522 179 + 29542582 CAAGAACCT-GTTTGTCTTGCTGAAACTGTTATTATCAGAGCCTAATACAAAGCTTGACACTTAAGATTTTCTATGaaatatttattattttaaattaattaa---catttttatttaaGTC-AGTAAAA-TAGACACTtaacaaaattgaaacaacctaaatgttattggaaactaagtttgag a score=4230 s hg19.chr6_ssto_hap7 961780 111 + 4928567 taactatattatattca-tccaataaaatattgta-agctgtttaaaaataacaaggatgttctttaggtactgataaggaaagagcttcaagataaattgttaCCATTTATG s canFam2.chr35 29271892 112 + 29542582 taatttcgatacattcaagcaaaaaaaatactgtgtagctgtatttaaa-aaggagtatgttctttaggtaccaatattgagaggtctctaagttaaattattaCCATTTATg a score=5381 s hg19.chr6_ssto_hap7 961958 607 + 4928567 CTTTCGTGGAGCGCCCTCTAGTGGTATATATATACAAACGGAAGGATTTAGAGAAAATACAGATCGGCTTTAGCTGGCTGAGATTTAT-TTTCAAAGCATGTTACTTTATAAGAATCAATTTTTATTTAAAAAAtttttttgagatagggtctcactctgtcgcacaggttggagtgcagcagcacgatcagtgctcactgcagcctctctctcttgggctcaaCAGGTGCATGTCACCACGTCCAGCTAACAATCAATTTTCAAAAGTACAAAAAAGCCATATTATGTATTAATGTGGAATTATGA-------------------------------ATTAAGTAGACAACAAGAATCAAAACAGGGTGTCTATTATCACTTCTGATAACATAAATAATGTAAAGATACATATTTTACAGATTATCTGTAAAAGCTTATACAGTACTGTTGCTGGGTATTTATGTAGGaaagctaccatttattgaatgcttactatTTCACATATGGACAGCATAGAGCATGTTAAAAAATTACCACACACATT----TACTGTATTCA--ATGTGTCACTCTGAATATATTACTGTGTACATGGTCTGTCATTGGACATGGTGAGAGATGCAGATTAAGCTGAAATTACTGA s canFam2.chr35 29272147 480 + 29542582 TTCTTCTGGAGCCTCCTCTAGTGGCACATGTGT------GGAAGGAGTCAGAGAAAACACA--TTGACTCTGGATAACTGGGAGGGAGGCTTTCAGGTGCCTTATTTTATA-----CCTTTTGGATTTTGAAA-------------------------------------------------------------------------------------------CAAAACCATATGA------------AAGAACTAATTTTTGGAAGCACAAGA--GCTAAATTATGTGTTAATGTGGAACTATGCTTTTTTTTTTTTTTTTTTTGAACTATGCGTTGTTAAGTGAACAC--AGATGGAGAACAGTGTGTCTGTTGTCCTTTGTG-TAACATACAT--------------------------CATCTGGAGGAGCTCAGACAATGCTCTTATTGCTTAACTA-GCTGCATAGCTACTACTTCCTA-----TTACTATTTTGCAGACGGACACCA--GGTCAC---------TTAGCACACACGGTCGGTTGCTGTGCTGATGATATGCCACTCTGCCGGCCTGACCCCATGCCCTGCCTGGGACCG-ACATGGTGAGAGGCCCAAATAAAGTGGAAATTACTGA a score=3269 s hg19.chr6_ssto_hap7 962879 183 + 4928567 CAACTCAAGAACTCAGGAAT----ACTTGCAGGATCTCATAACATATGCTATACAAAATCAATTAAAATAATATTTAAATGCTGAAAGAAATGAGCAGCTCCCAGGGTGAT----ACAGGGTGGTTTCACTTCTTGGACACATCTACACTGAGCTCTATTCCTGGCA-ATACCTGATGTTCCCATACCCCAG s canFam2.chr35 29272627 174 + 29542582 CAACCCAGGAACGCCTGGGTTCACGCCTGTGAGATCACATAGCAT--GATGCACAAAATCTGTTATAGGAACACTTGATCGCTGAGCAAAGTG-------CCCTGTCTGATGCACACAGGGCAGTGTCACCTG------ACCTCCATCCT---TTCCATGCCCAACAGAAACCTGACACTCCTACACCCAAG a score=19449 s hg19.chr6_ssto_hap7 963372 973 + 4928567 TTTCTGCAAGTGGCAACACCACTGGCTTCATTTT-GCTGGTGGCCCCTCTGGCCTTCCCTTGTATATATCACCTTTGCCCAAAGACCATGTCAGCCAAGGGACTGCTCTCACAGCTCCAGGAATCCTCCCCTTTCAGGAAATTTGAGGCAGTTGAGGGC--ATGAAAGTAAATAAGCTGAGCTCATCAGAGGCCTTGTATTGtggtggttaaaagagccagttctaggactagaaagcctggcttgaaatcccagctctgccactccctagtggtgtgactttagcaagttcctttacctcttttgtacctcccttttctcacctgtaagatatgggtgataatagtttaatatttgttttgttgttgtgaggattaaaggtgttaatgcaagtaaaccacttagaaccacagcacatagaatatctcagtaaggtggttaGTTTTTT---------TTATTG--TTGTTTTCAGAGATGCTGTGATTTCTCCAAAGTGGCTGTGATGGCTCGGCAGGCTCCTGACCCTCTCTGCTCCCACATGCCTCCACCCTCATCCTGATCTCCCATCCAGCTTTTGACAGCTTGCTTGGTGCTGGACAATTGCACACATCTTACCACCCCCAAATCCTGCCCAG--AAGCATCTTGTGCATAACTCTCCTACCTGAATATGCAACAGGGAGAAAGAGCGTCCCAGGACATTTTAGGTTTTTGAAGAAAAAAAAACCC---CTTTGGTAAAAAGCCAGAGATCCACAGCGGCCACTTTTTCCATGGGATTGACCCCTGCAATCTTGACTTTCAACCACACAGCACCAGAGTAGCCAAACATTGCTTGTGTCCAAACGCTGGCTGCCTTGAAGGGTGAAAGAATAAGCAGTTCCCAAACTCAGCTGACCTTAATGTCCTTCTAGCTCCTTACGCCCATCTCGGACAAAAGCAGAAA-TGTATGTCTCAGTTGTGTTTCTACCCCTTG-------CTGCCCAATATAAA s canFam2.chr35 29272801 824 + 29542582 TTTCTGTAAAGGGCCACAGGACTGGCTTCTTTTTTACTGGTGGCCCCTC-------CACTTGTTTTCATCACCTTTGC--AAAGACCGGGTAGTCCTTGGGACAGCTCCCCCAGCTCCAGTGGTCCACCCCT----GGAGACCTGAGGCaggaggaggatgatgacagtgggtg------------cag--------------------taaggggtccagt---gaagataggaaacgtggcttcaaattccagccctgcccatccccctctgt---agttaagccagctactt---------------------------------------------------------------------------aggattaaatgaattaatacatgtaaatcgcttacaacagcaccacatggaagcgttctacaaggtgtttttttttTTGCTGTTTGATTGTTGGTTTGTTTTCAGAGATGCTGTGATTCCTCCAAAGTGGCT----TCAGTTGGCTAGCTCTCTCCCCTCTGCTCTCCC---TACC-CTGCCCCCCACCTGCCCTGACCTCCAGCTTTGACCAGTGGGCT-AGTGCTGGATGATGTCAAGCATCCTTCGGCCCC---AGCCTGATCAGGGAAGTGTGTGGTGCCTGACTCTACCATCTGCATGTACACGGTGGGGAAAGAGTGTCACAGGACACTTCAGGCCCGCAAGGAGAGACCCCCCCACCCCGGGGAAGGCAGTCAGACAGT-ACAGATGCTGCCTCTCCCA--ACCTTGACCT----GACCTTGACGTTCACCCTCACAGCCCCAGGGCAGCC---------------------------TGCGCTGCAGG---AAGGAATGAGCCACTCC-AGGCAAGGCTGACCCATCTGTCCTCCCAGCCCCATGGGCTCATCTCAGACAAAAGCAGAAAATGTACACCAAAGTCGAGTTCCTAGCTCTTGGGCGGTTCTGCCCAATGTCAc a score=22974 s hg19.chr6_ssto_hap7 964658 1164 + 4928567 AGCTGAGCCAAGAGGTGAGAGAAAGGTCAT--TTTCCATTCCAGATCTCACTCTCCCCTGTGACACTGAGGAAACTGGCAAGTGATGTGAAGGCTGGAGAGCGTGTCCTGTATGCTGGCTCTGTCCCTTCTGCCTGTGTTGACTGACATAGTTAGTTGCTGCCCTTGCTGGTCTCCCTTCCTCCAACCTTG------CCTC-------TCTGAGCACACCTGACATTCATCTCATGACTTCCCTAAAAACATTCTTTGGGAACAAGAAACTAACAAATCCCAAGTGACCTATCACATATACAAACATACAGGGCAGAGTTTGGATTCGCGGTAGAAGAAAGGGAGGTTAGACATTAAGAAGAATGGTCTGGTGATGACAGTTGTGAGATAATAGAAACAGGAAAAAGAAATCTAAGTTTTCTTTCTTTTTTTAAGAACCAATAATAATTTCTCTCTTTTGACTAGTCAGTAGGGCTGGGGTGGATTGGAGGAAGCTTACATATTCCATGAACAAGCCTCTTCCTAAGGTCCTGTAAGTGATCCTGCCCCACTGATTAGCCCCTAGAAGACCCTTCAAAGGTTGGATCTCCAGGAGGGAGTGGGGGAGGAAAGCCCTGTACCAGGCAGCCTCTGCTCCATTGCTCTGGGGGGGTGGGGAAGGCAAACCCTGGTCATCCCCTCAGTCTGTAGCCCTTTTGTGTGAGTGCCTGGCAAGGGTGACGTGG-----GGCTGTTTCTGCG---GGCACAGCTGCAGCAATTACCGGAGTGGAGGCAGGGCCCAGGCAGCACTGCCCTCC-AAGATCTTCCCTTGGGCTTT-TCAGCAGTAAGGGGACATGCACCCCAAGGGCCTCCACTTGGCCTGACCTTGCTGCGGGGGC---TCTCTGTCCCCAGGAACAGTAGAGATGGCAAGCTTATCGAGACCCTCTCTGCCCAGCTGCCTCTGCTCCTtcctcctcctcctcctcctccAAGTGTCTTCCAGCTATGCAGGTAAGACATGTTTTTTTTCCTGCCCTGGGGAGACCCTGAAAACAGAAAGGCTAGTTTCCTGGGGCTTAGCTCCTTCAAACATCCTCAAG-----TTGCTATATTATCTTTCTAAAACATAGACCTACTGACATGCCTCCCTTCCTCAGAAACCTTCCGTGGGTGGTTCTTACAGCCTTCAAGATGGAGTCCAGACTC s canFam2.chr35 29274572 953 + 29542582 AGCTGAG------GGCAGGACAAAGGCCTTAATTTCCAGTCTGGGTCTCCCTTTTCCCTGTGACACTGTGGAAATCAGAGCAGGACACCAAGGCTGGGAGGTGTGCCCTGT---------CAGTCCCC---GCCTGC------------------------CCCTCAACAATCTCACCTCCGACCTCCGTGATCGTCCCTCAGATTGGTCTGAGCACTGGCAACA-----CTCATGACTTTCCCCAGCAAATCCTCTGGGAATGGGGAGCTCACTAAGTCCCAGCCATTCAGCAGCTGGA-----ACACAGG---------------------------AGGGGAGCAAGAGGTCAGGGAGCAAGGCCTACC--CCGCAGCTG----------GCACCAGGAA-------------------------------------------------------------------------GAGAGGGGTTGGAGGAACCTCACAAGCCCAGTGAG---GTGTCGTCCCAGA-----------------------------AGCCTCTGGAATAC-----------TGGGCAGCCCAGAGGGGGCAGGGG------GCCCAGTACCAGGCAGCCTCTGCTCCATAGCTC-AAGGGGGTAGGGATAGCAACTGCTGGTCACCCTCTGGGTCAGTAGCCCTTTTGTGTAAGTGCCTGGCAGTGATGACTCAGCCAGTGATGACTTCCAAGCTCAGCACAGCTGTGGC--CCAGCCGAGAGGAGGC----------------TGCCCTCCTCAACCCTCCCCTCAGGCTGTGTCAGAGGTT-GGGGCCATGCACCCTGCAGGCTTCTGCCTGGCCTGACCCTGCTGCAGGGGTGCTCCTCTGTCCACAGTCACAGCTGAGATGGCAAGTCCATGGAGCTCCTCTCTGCCCAGCTGCCTTC------CCCTGCTCCTCTTCCTCCTCCAGCTGTCATGGAGTACTGCAGGTGAGATTTATCTTTACTTCTGCCTTGGGGAGACCCCAGCAACAGAAAGGCCATGTGCCTGGGCTCATGGCCTGCCACTCATCCTCCAGCAGTCTTGCCG-gtgatgggtccagaacacaggtgtgctgacaggattctcctcctcagaaaccttccttgg----ctcccaagggcttcagaatgggaaccaaactc a score=17158 s hg19.chr6_ssto_hap7 966283 843 + 4928567 CTTAATGTGACTAAC--TCAAGGCTTTccttgaactacttcttacttgtctttccagctttgtcttttcacctctcaaattgagataaaataataacaacctcttggag-ttctcatcaggattacatgaaatgagatatgtaacatgcttagcagtgcctgtccatagtaaatctcaataaatgtttgtGGAATTATAATATCTTGTCATGTTTGAGACTTTGCTCTGCATAATCAGGCACCAGTAGGTTTTTATAAAGGAACCCGGCTGTCACGTGCAGAGGAGAAAT-AAACAGAAA---GTTTCCCATCCTCAGGGAGCCACCTGACTGACAGAGGCACAGT---------------GCATCCACTCT-----CCAGGTCTAGGGGAGAAAGCAGCCTTATTTCTTAGTAGCTCAGAATCTGACTTGAGAAACACAT---CCACATAGAAAAAAGGAACTTTTTCGGGTCAGGGTCCGGGAGCCACAGTGAGGTGGAAGATACAGGGGAAGGAAGAGGGAAATAGAGCCATCCCCAGGGTGGAAGATCTCAGAAGAGAATTTGGGAAACAAGGTATGAACAAGGACTGAATAGTGAGAAGTGATGGAGAGACAGTTAAAGTAGATGGAGTGACAAAAGCAAAACCTCTAAGGGTAGAATAGGCAGCAATCTGGCCAAGTCCTAACAGGGAGGCCCATAG---GAGGATTCAACCTCAAGATGCTGTGCCACATTCCAAGAGGGAACCTAAAGGCTGGGCTGAAGAGTCAGAGATGGCTACAGCTGGCAAAAAGATGGGCAGATGCTGAGAGGAGATGATTGCTAAAATGTTCTGTCCAGGACATTCACAGTATCTCTATAACCAGAGTCTTT s canFam2.chr35 29275525 786 + 29542582 cataatgtggctttcagtcaagattccccctgagctcattttt-----tgtttcccgctttgtggtctcaccAAC--AGTGGAGATAGACTAACAACAGCTTCTGGGGGGCTGAGGTCAGGGTTGAACAGGACAGGGTATGTA-TGTGCTGAGCGGTGCCTGCCC-CAATGGGTCCTGCTGAGTGTT----GCATGGCAGCATCTCGTC-TTTTGGGAGCTCTCTTCCACACGACCAAGCACTGACAAGTTTTTGTAGAGGG-TCCTGCTGTCATGTGCTGGGGAGACACCGAGCGGAAAACAGGTTTCCAAGCTCAGGGAGCTGC--AGCCGG--GAGGCCCAGCCCTGCTCGGTCTCAGACATCCTCGCCGGTGCACAGATGTCGTGGAGCAACCAGTCTTACCTTTCCGCAGCTCTGAGTCTGGCT---GACAGACATTCACCACATAGGAAAAG--------TTTGGGCT-------------------------GAAAGCACAGAGGAA--AAGAAGGAAGGAGAGTCAGCTCCAGGGTGGAA-------------CATTTTGGGAATAGGTTTTGAGTGAGGACTAAGGGCTGAGAGGCCA-----GGACAGGTGGTGGTGGAGGAGCGGCCCAAGCAGAGCCACCAGGGG-AAAGTGGGGAGCAGCTTGGTTAAGTCCAAACATGG-GGCCCCCATCCCAAGAATAGAACTGCGAGATGCCAGAGCATGCCCCGTAATGGGACCTAAACGCTGGACTGAGGAGTCAGAGAGGCGACCAGCTGGCAGGAAGGTGAGCACCTGCTGGAATGGCGC-------------TTCGTTCTGGGGCACTTGCGCCACCACCATAACGAGGATCTTT a score=28731 s hg19.chr6_ssto_hap7 967501 504 + 4928567 ATTGCAATCCTCCCTGGCTCTAGAATGTCATTTAAAAGTCGAGTGTC-TTCTTCCTTCCCTGTTTTGAAGCAGCCCTTCTCATGACAGGCTTGCTTGCCAAGGTTCCCTCTGACCTTAAATCTCTTCCTTTTGGTGTCTTGGACAGGGCAGTTCAGAGTGATAGGACCAAGACACCCTATCCGGGCTCTGGTCGGGGATGAAGTGGAATTGCCATGTCGCATATCTCCTGGGAAGAACGCTACAGGCATGGAGGTGGGGTGGTACCGCCCCCCCTTCTCTAGGGTGGTTCATCTCTACAGAAATGGCAAGGACCAAGATGGAGACCAGGCACCTGAATATCGGGGCCGGACAGAGCTGCTGAAAGATGCTATTGGTGAGGGAAAGGTGACTCTCAGGATCCGGAATGTAAGGTTCTCAGATGAAGGAGGTTTCACCTGCTTCTTCCGAGATCATTCTTACCAAGAGGAGGCAGCAATGGAATTGAAAGTAGAAGGTGAGTAGTGC s canFam2.chr35 29276318 483 + 29542582 ATGGAGCTCCTCCTTGGCTCCTGAATTCCGTGGAAAAATCCAGTGCGGTTCTTCCTTCCTTG---------------------GACACACTTGTGCGCCCAGGC-CCCTGTGACACTCTGTTTCTTTTCTTTGGTGTCTTGCACAGGACAGTTCAGAGTAATAGGACCAGGTCACCCACTCCGGGCTCTGGTGGGGGATGAGGCCGAGCTGCCATGTCGCATCTATCCCGGGAAGAACGCCACAGGCATGGAGGTGGGGTGGTACCGACCCCCCTTTTCCAGAGTGGTCCACCTCTACCGCAATGGCAGGGATCAGGACGCAGAGCAAGCACCTGAGTATCGGGGGCGGACCGAGCTGCTGAAGGAAAGTATGGGCGAGGGGAAGGTAACGCTCAGGATCAGCAATGTTCGGTTCTCTGACGAGGGCGGCTTCACCTGCTTCTTCCGGGATCATTCCTACCAGGAGGAGGCAGCCATGGAACTGAAAGTGGAAGGTGAGTAATGC a score=1986 s hg19.chr6_ssto_hap7 968043 50 + 4928567 CAATTATTCTCTCAACTGAGATGAGatccctcaacccaaacatctcagtc s canFam2.chr35 29276821 47 + 29542582 CAATCACTCTCCC-CCTGAGAT--GACCCTGCAACCCCAACACCTCACTC a score=2634 s hg19.chr6_ssto_hap7 968927 65 + 4928567 GGTCCTAGTGAATAAGCAAGTAAATCAAATGTCTAAATATAATTATAGAAAG-GAGATGTCACCTT s canFam2.chr35 29277567 66 + 29542582 GGTCCAGGTAGGTTCACGAAGGAAGCAAATGTCCAAACATAGTTGCAGAAAGAAAGACGCCACCTT a score=3413 s hg19.chr6_ssto_hap7 969607 134 + 4928567 CCAGAAGATGGCATTGTATGTGGAACAACAAAGCACTATTTCTAGAGACTGCCTGCAGGGATATGGAAATAGCTTTATGTGTCTCAGAATGTTCTTCATACAGCTGTTTTTATTGGGGAAATTCTACTTGCCGA s canFam2.chr35 29277726 112 + 29542582 CCAGAAGACA-CATTGTGTGCAAGATAACAAAGCCCCATTTCTGGAGA--GGATGCCGGGGTGTGAAGATGGCTCTGTG-----------------CACGCAGCTGCTCGCGCTGGAG--TTTGTACCTGCAGA a score=10702 s hg19.chr6_ssto_hap7 970168 356 + 4928567 GGAAGACAAAAAGAAAAGCAGCTAAAGACTTTGCCTCAGGGGAGAAAGTTCTCTTTTGGGTTGCTATCCACATTCCAACCTCCTGTTCCCACCTCTTCGTCTGCATGCCTAAG---------AAACTGTTTTACAAGTAAATAAGGGAC-----GCTTTGTCTAGGCTTTGGAGCCAGGAA----GTTGAGACAAATTTAGGAATGAGATGAAGTAATGGTATTATTGCAAGTCTCAGGTGTAACTACCTCTGCTCTTTCTCTGAAGAGTTTCTAATTTCTCTTGTTTACTT-ATTTTTTTCTTGTCATTTTTGTGATTTTATTACTAGTTGTCTCTAATCCTTTCTTTAAATTCTTCATTATGAAACATAAAAA s canFam2.chr35 29278025 344 + 29542582 gagggaaggaaagaaAAGC---CAA-----CTGCCTCAGGGCACGAAGTCCTTCCCTGGGCTAACGCCCACATTCCAACCCTCTCCTCCCTCCTGGGCGTCCGCAAACCAGAGTCTAAAGCAAGAGTGTTTTACAAGCAAACAAGGCACTGCCCACTTTGCCTGGG-----GAGCCAGGAATCCAGCCGAGTCGGAGGCTAGAATGTGG-GGACTATTGCTGCTGCTGC------------TAATTACCTCCCCTCCTTCTCT--AGAGTCTTTTATCTTTCTTTCCAACTTTACTTTTTTCTTGT---TTTCGTGATTTTACTACTTGCTGCCTCTAATCCTTTCTTTAAACTGTTCACGATGAAGCTTAGCAG a score=2341 s hg19.chr6_ssto_hap7 970846 135 + 4928567 tataatgagcctccaagtgcctaccaccttgctgcagcacttgtcaatccagggaccacccacctcaccggctccccactcattaccaccctcccctactcaattactgaggtaaatcctaggcagcatgatcat s canFam2.chr35 29278389 107 + 29542582 TGCAAGGAGCCTCCAGGT-CCCGCCGCCTTTCGGCCAC---TGTCA----------------CCTGACCTGCTCC--------TGTCAGCCTCTCCCCCTTCCCTGCTGAGGCAGATGCTGGGCCATGTTAGCAT a score=6165 s hg19.chr6_ssto_hap7 971625 290 + 4928567 acacacaataatata------------------------aataaataaataaccacaatactattatcacatcttacaaactcaacaaaaatttcttaa---------------------tatcatcaaatacccagtttgtgttcaaattttcctgattgtttcataaatatac---tcttacagttggtttcttt-----tagcgagattcaaatgagacccacctgttgacctttgcccttagggtttcccagggtctgaattttgttgacgacattcccatgttgctatgtaatacggtcctccatgccctgtgtttttctgtaaactgataga----tgtgg s canFam2.chr35 29278630 323 + 29542582 acaaacaaGAatgtatcactcaaatgtaagaagtcttttaaaaaatca-caaccagaatactgtgatcatgtcttttacaattaacaaaagttccttcaaaaaaaaaaaaagttccttcatatcatcag-tgcccactttgtgtcgaaatt--cccgattgtttcacaaatatatactttttacatttgttttgtttagtttgagtgaaatctagacaAGAGTCA--TGTTG-------------GGGTTTGCCATGGCCTGGAATCTGCTGATTCTGTTCCCATTCTGTTCC---ACATGGTGCCCA--GACCTGTTTTTTCTTGTAAAGTAATAGAAAATTGCAA a score=7665 s hg19.chr6_ssto_hap7 971915 523 + 4928567 aggtgcaatgacatttgtgtttgatttactttggcaaatatagttcatcagtgatactctatacttcTTGTTGCTTTACATCCGGAGGCTGATAATGTCTGCTT-TTCTCTCTTTT-------CTAATTATTTGTGAAAGGAAAAATGTGGGGGGTTGGGAGAAAAAAACCCTTAAGTACATACTCGCTAAATCACATTGCTACAGGTAACTTCCATTAAGA-ACTTGAAAGTAAAGGTAGCTGCATTTTCCCCTAGGGAACACAATGATAGACAGGAGCCTTAGTCTACAGCTTGAAGGATTGTAATTATACCTAAGCAACCCTCCTGGACCAGTTTAATGTTATTAGCTGTGATGTATCCCTACCTTTGATGTCATTATCCTTACTTAGctcccttaaagcagagatcaagatgaaaagggcttcagctgcagcatggcacatggagatta---gaGTGGGGCTTTTGGATGCTGAGGAGCAG------ACCTAGAATGGG--AAATAGATGGGAGCCACAGAAGTGAAGGTCCCCCTCCC s canFam2.chr35 29279189 499 + 29542582 aATTGCAACCAGACCCAGGTTTAATTGATTTTCTCAAGCAT---TAATAGGTGATGCCGTAGATTCTGTGTTGCTTT-CACCAGCTGGCC-CCAATGGCTCCTTGTTTTCTCTTTCTGTGATCCTAGTACTTAGTGAAGGTATGCAGGTGTGTG------------AAGCACTGAACTATGCACCC--------ACATTGT---GGGTCACTTCTGAGAAGATGTCCGAGATTAGAATCGCCTGCATTTTCTTCTGGGGAACAAAACTCTAGGCAAGAGCCTTAATCTGCAGCTGGAAAGGCTTTATTCCCACCTAAG-AACCCTG-TAGACCACTTGCTTGCTGACACCTACA------CCCCACCCTTGATGGCAGTATCATGACGTGGCCTTGTTACAG----GACACAGGGGGAAAGTATATGAGCC-CAGCCAGGCGCCCAGGGATGACCCAGGTGGAGCTCACAGGCACTGGAGAGCTGGACTTTACCATGGAGGGGCAGAGCTGACAGGAGCCCTGTCAG---GGGTCCCACTCCC a score=2527 s hg19.chr6_ssto_hap7 973344 74 + 4928567 aaaatagtaatgaacataagtgatagtttgagatttctgtgacttttctaatgtgacgtgaaaatatttgtgat s canFam2.chr35 29280547 63 + 29542582 Aaaatagtgatgaac-taagtgatattttgaggattctgtggcaactctaat------taaagatat----gaa a score=4417 s hg19.chr6_ssto_hap7 973724 133 + 4928567 aatatttgtgatttttattgacgacaaagtcaaaggttctcttcatattattgtggtgtatcgcctacaagcataattaaaataaacactaaatttcagtttaaagtttactgaaaataaatatgtatttttt s canFam2.chr35 29280610 111 + 29542582 aatatctgtgggttttattgatgacggggtcacaggttctgttcatggc-ctgtg---------ctactag------------aaatgctaagtgtcaggttaaagattactgaagatcagcatgtatgcttt a score=1536 s hg19.chr6_ssto_hap7 973906 131 + 4928567 GTCCTAGTTCAGGTTCATGTTGTTTTTTACTTTAATTGTTATCACAGTCTCTTAACATTTCTCCCTATGTTCTCCAGTCCTGTAGGTGCTAAATCTGACGTGGTCACTTCTCAGCTTGGAATCCTTCAGTG s canFam2.chr35 29280781 120 + 29542582 GTCCTGGTTCAGCTTAGGGCA-----TTGTTTTCACCATTACCCTGGCCTCTGAACGGGCCACCCT-----CCTCCCTCCTGCAGGGGGCAG-TCAGGGGTCGGGCCGTCCTCCCCCGGACCCCTCCAGTG a score=3386 s hg19.chr6_ssto_hap7 974158 183 + 4928567 aacctttgactttgtcgtcaataaaaaGTCCCTTGAGGGACTTCAGATGTAAGTCCCTTAGCTGCTCGTTAAAACTCCCCCAGCCTGACCCAATACACAATCTTGACTTTAAACCACTTGTCATTCTAAATCACTAGCATTTCCTGGAAAAAAAAGCCATTTTTCCTTTAGGGCTAAGCTCAG s canFam2.chr35 29280901 137 + 29542582 AGCCCATGACCT------------------------AGGGTGCCAGGTCTAAGTCTCTCAGCTGGTTCTCAGAACTCTGTCAGATGGGCCTAGTACACAGCGTTG---------------------CAAAGAACTAACCCTTCCTGGAAACAAAC-CTACTTTTCCTGAAAGGCTATGCTCAG a score=16715 s hg19.chr6_ssto_hap7 974349 1194 + 4928567 TCTGTGTCACCTTCTTTGAATCCTGATGATATTCACTTCTTTATTTGACCTGatttattgggccccagacaccatgctgagtgttg---------gggattcagctctggacaatgtcaaatgtcagtcctgcctttcagatcctttctactgggTGAGCCCTGGAGTGCTGGTTCTCCTCGCGGTGCTGCCTGTGCTCCTCCTGCAGATCACTGTTGGCCTCGTCTTCCTCTGCCTGCAGTACAGACTGAGAGGTACAGGGCAGAGGGTGGGTGGATCAGGATCCTTTCTTTAAATGAGCTGGCTTCTTGGAGCTACACCACTTAACATGTATTTGTGAGTGACTTCTGGGTTCAGAAGTTCTTCTCACTATTGAGTGATAAAGAAAAAAAATAACTCCATGATGAAAGAGTtttacatcttacggaatgctttcatatgaataatcggacctagcatttccctatgagctaactatgccatatagtaaccccattttacagaggatacaactgaggccaggagtagttcagtgacttactcaaaccgatataacttataagtggtagagctgaggcct-------------cTGTATCATA------CCTAGCAGCTCCATGCAACTTGGGAGAGTGTGAGCTTCGAAGTCAGACAGGTCTAGGCTATTAGGAGTTTTGAATAAAGATACTGAAGTGAAAGTCTCTACCACACAGTAGGCGTTCGAAAATTGTTTCCTCTTTCTC---CATTCAACACTGAGGACTCAGGTTCAGCTGCTGATGAAGCTCCTCTTTTTTGCCTAGAGCTTTCATTCTGAGCCTTCTCCTCCTACCAAGTGTCTCCCCAATGCCAGAGCAGGAAGAGTCTTCACTCCTCCCCATGCCCCACCTCCCATTTGTTACTAAGAGGAGAGGAGAAAGTAGCAAGGAGGGTATGGGGAATGTTCTGGGGGAATGGGTGTTGGTGCGATCAACAACAAAGTCCTTTCTCTCACCTTGAATTCATCCCAGATGCCTGCTTGTTTACTTCTTCCACACAAAAAAAGGCCTTCAGCCCTcatggctgagcagaaagaatctgaatgttagagtcaggcagcctgggtttgaattccatctcaggtactgaactctatagcaaaattcttagattctccaagcttcagttgccttgtctgtcaaatagagaaaacatccttcgtcctaaattgtagggaggatt s canFam2.chr35 29281260 938 + 29542582 CCTGTGTCCTCTTCCCTGAATCCTGCTGATCTTGACT--------------GGTGTGTTGAGCCCCTGGGATGGTGCTAGGCGGTGCCGGCCACTGGGGACCAGCACTGC-----------------TTCTCCCTTTCAGATCCCTTCTACTGGATCAACCCTGGAGTGCTGGTTGTGATCGCTGTCCTCCCTGTGCTCCTCCTGCAGATCGCAGTGGGCCTGGTCTACTTCTGCCTGCAGCACAGACTCAGAGGTA------------TGGGCTGCTCAGGACCTT----------------GCCTCTTGGAACTTGAGGGACTCATATTTAGCTTTGGGTGACTT-TGGGTTCACATATCC--------------------------ACAATGACC------------AGTTTCATGTCTTCCCAAATGCTCTCATTTCTAAGACAGGA------ATTTCCCTGTGAGGTAGGGCTGAC---CAGTGAGCCTA--------------------AGGCCACT-GTGGTTCAAC-ATTCTTGTAAGCGTTTGCACCTTGAACATGGCAGAGCCCGGGCCTGAAGTCCCCATCTCTGGTCCCTGAGCTGCCCCAGCAGCTTCA--CAGCCTGGGATGGTG--AACCTGAAGGCCAGACATGTTGGTGCCTAATGGAGGTTTCCACGAGGACAC-GGAGTGAATGTCCCTGCCACATGGGGGGTGTTCTCAGCTTGTTTCCTGCTTCTCTTCCATGCAACACGGAGGACT-----------GTCCATGAAGCTCCTCTACTGCACCTGAAGATAT-ATTCTGAGCTATGCCCTTGTATTG-------------------------------------TCCTCCCC-TGTCCCAGTCC-----------------AAGGGCATAGAGTCGCGGGGAGGG-ATGGGGA------TGCAAGGGTATGTGGTGG---------------GGTCTCCTCTCTCCCCTTGAATTCATCCTGG-TGCCCACT-----------------------GTGGTTGTCAGTTCCCACAGCTGAGCACAAGGGCCTGTGGTGTCTGTG-------GCCTGG-CTTGAAT-CCAGCTGGGGCAGGG----------------CCTGGCATCCTCCCAGAC---------------ATCCCATGGAGGGAACAGCCTCCCTCCCATACCGGAGGGGATGTT a score=15179 s hg19.chr6_ssto_hap7 975600 932 + 4928567 aatgttcagctcCTCCCT-CCTCATTCAGATGGGAAGTGGCTTTAGATAAACAAAGTGGCAACGCAGTGGGCTGGAG---------------CAGCTC---------------TGTGAACTGAGAATCCAAGAAAAGGGGCGAAGAGCAGCTGGGATGTATTGGATGCTTGTGCTGGCTTGGAGCATTGC---TCACATTCTTTATTCGC-TATTGTATCTAGACTATAGC--TAGAGAAAGAGCCGCAACCATTGGCTTTAAATCCAGTGCTCTTCCTACTCTCCTGAGGTTGTTTCCAGGCTGTAGAGAAATAGCCTGCACAAGGGGCCCAGGCGCTGGGTGTGGGAGGGTCCCCACCGAGAGCCAGAACATGCAGGAACTA-AAATGTTGCCTTTTTCTATTTTAGGAAAACTTCGAGCAGAGATAGGTGAGTTCCAGTCATCGTTTCTCCCAATTCTTGCCTTTTGGTTTTTTGGCATAACGGAAATGGTCCCGTTCTTGGACCGTCTCTCCCTCT----CAATACCCTGTTTTCCCCTC-------------------------------------------------AGTTTCCCTTTCTCT-------------------ACAGTG-----------------------GGTGTGTCGTGCCTAGAACAAGTTTTAAGTAATTAAATAACAAAGACTCAGGATAAAAGATCCTTTTTGAGTGCCCTACTAAATCCATTTCCATTTGTTTCTCTTTCAGAGAATCTCCACCGGACTTTTGGTAAGTTCCGGCATGTCTAGGCCCTCCCAGGTCAACTTGGTATTTCACTCTAGTTCCAGTCACCTGGGGGAACAAGGACCCCTGGCTCCTGGTTGAGTCCCTTCCTCTCTTCTCTTTTCTTTCTTTAAATAAGAAGTCATTTGCATTTAGGATTGGTAAAATCataataaaaatactcatgtactgtttttatgtgccaggcactattctaacta----ctttacaaaaatgttatcttattCTGTTTAACTCCTTATGCACATGATCTCTCTTTTCAGGAAT s canFam2.chr35 29282238 930 + 29542582 AAGGCTGAGCTCCTCCCTTCCTCCTCCAGGTAGGAAGTGGCTTCAGATTCACAAAGTGaaaaaaaattaaaataaaaatattCACAAAGTGACAGCCCCTGGGCAGGGATGGGTGTGAGTGGAGAA--CAAGGAGACCCAAGGCCAGGACCCGGGAGGT---------------TGGTGTGGGGCACTGCCCTTCAAGTCCTCAACTCAAATACTGAGTCCACACTGTAGCAGCAGGGCTAGGGCA------------------------------------CTCCCGAGGATGCTCCTGGGCTCCTGAGAAACTGCCTATACAAATCACA-GGGCATTGGGTGCAGGAG---CCCCATCAAATGCCAG------CGGAAACTCTAAATGTTGCCTTTTTCTATTTTAGGAAAACTTCGAGCTGAGATAGGTGAGTGTTAGTGGCTCTCTCTCCGCCATCTGTCCCTCTGGTGTTTGGGCATCACCAATGTGGTCATTTTCTAGGACTACCTCTGCATCTACCCCCAGACCCTGTGCTTCCTCCCAAAATTCACTAGTATCTCAGACCCCTGCAGCCAGCCCTGAACTGCGGTAGGTCTCCTTCCTCTGCCTGCTGCCTGCTGGGGCACAGAGTCGAGCAGCTCCCTTTCTGCCATGGTCACTCACAACTAGACACAGTTTAAAGTAACTTAATAACAAAGGCTCTGGGGAGGAGAG-------GGATCTGCCACCGAGTCCCTTTTCTGTGTGTTTTCTTTCAGAGAACCTCCACCGGACTTTTGGTAAGTGCCAGAAA--CCAGGTCTTCCCAGGTCAGCT-------------------------------GGAAATAAGAACCCTGGTTCCTCGTT----CCTTTCCACT----GCCTTTTTCTTTGAAAGTCAGCATCCACT-GCCTCCAGGATGGGGGAGATGGCAGCAAA--TACTTGGGGGACACTTCTCTGTGTCAGGCCCTATGCCAGCGGTTCCCTCTACGGGG----------------------TCTTTGTGCACGTG---TCTCTTTCCAAACTt a score=1121 s hg19.chr6_ssto_hap7 976532 60 + 4928567 GGCAAAACAGA-GGTAAATAGAT-CGTTTACACGTAAACCTGATGTCTGGTTGGGGAGGTGA s canFam2.chr35 29283327 62 + 29542582 AACTTTACAGACAGGAGATAAACACCCCTCCAGGCGGGCTTGATGTCTAGTTgtgggggtgg a score=13194 s hg19.chr6_ssto_hap7 976652 596 + 4928567 AGGATGTTTCCATGAGTACAGA-----------ACATGACTAATCAGAGAAGACCTCAT--AGAGGAATAGAAAAGCCACCAAGccccactagga-attgacccctcaaggacatggtttctagcctttttgttcactgcagattgcccaatgcctaaagataatg---gcaacagaagagcacccaaatatttgttagataaatgTTGCAGACACTAGAAGGTGTCATTAGG--GCACAGATGGTACCTTCTCTGAGCAAACTTCCTTCACAGCTCCTCCTCCCGAGGCTGTAGGTGACTCTACTCTTGTCACCTGGCACACAGAGTTCTATCGTACGATTTAGGAAATTAGACCAGTGTGTGGACCACACACACACACATCTTTACACACCCAAAGAGGAGGAATAGTATCTTTGTTTTGGAGGACTTGACTATGAAAGGtcttaactcctttttgtaccatgaatctctctggcactccagtgaag-tctaaaggacccctttgcagaatg---tttttaaatatacacataaaatagaacacataggattgcaaaaacaatcattgtactaaaatacagttatcaaccgataatcacatttgtgatatagtaaca s canFam2.chr35 29283433 560 + 29542582 AGTGAGTTGTCATGAGCACTGACAGGGAACCTCACAGGGCTGACTAGGGAAGAACTGCTTGGGAGAGAGAGAGAAGACACCTCACCCCTTTAGACTGTTGGCCCTTCCAG-ACA-GGTCCCCATCCTGCTCATTCACTGCACGGTGCCCAGTGCGTAAGGATGATGCCTGCAACACGAGGGCACCATGAC-CTTGTTGCATGGATGCAGCAGGAATTCTAGGATGCCACAAGGCAGGGCAGA-GGTCGCTGCTCTGAGCAGCCTTCCTGGACGG-----------------------------------------------GCAGTGCTCCATC-CGCACATTAGGACATCTCATCAGGGTG-----CAGACAAGCACA-GTCTTTGCAACCTACAAAGGGAGGAACCAGAGCTTTGTTTTGTAGGATTCTAATAGCAAAGGtcttatgtc-tttctgcatcgtgaatctcctgggcgtcctgctgtagctctaatggaacctttcccagattaaaatttttaaaccatcacataaaacttaacacataaacttgcaaagaaaaccattaaattgaaacacaggtatcagaatataaacccatctgtaacagagtaaca a score=2718 s hg19.chr6_ssto_hap7 977552 57 + 4928567 aatatttctttagccaa-agtaatacattaagtaa---tgtagcagcaagtctaataacct s canFam2.chr35 29283993 61 + 29542582 aatgtttctttaaataataaaaatgcactaaataacaatgtagcagcaggtccaataactt a score=5832 s hg19.chr6_ssto_hap7 977933 126 + 4928567 tttcaacatactaataaacataaacagtatttcaagatttctgcaataactctaatgggaatgaaaacatctgtggcttccattggtaattaagtcacaggtactgctcatattgtggttagttgT s canFam2.chr35 29284054 116 + 29542582 tgtcaaaatactgacaaacat---------tttgagatttcagcaacagctccaatggcaatgaaagtatctgtgatttctgttggtgataaagtaacaggtactgctgatgac-tggttggttgc a score=45235 s hg19.chr6_ssto_hap7 978402 1917 + 4928567 ttacatttttaatgaaagaaaatgttaaatccagtta-------ttgaaaataaggaggcagtacttttctcatccaagttcatggactttctgaattttgtccccagagtccTTTGGTGTTCTAGGACCCCAGGTTAAGGAACCAAA----AAAGACAGGTGGGTGGGGCATGAGGGGGAACACATGTTAACCCTGTTTGTTCTGGTGAACAATTCAGATCCCCACTTTCTGAGGGTGCCCTGCTGGAAGATAACCCTGTTTGTAATTGTGCCGGTTCTTGGACCCTTGGTTGCCTTGATCATCTGCTACAACTGGCTACATCGAAGACTAGCAGGTGCAGTGGCTGGGCAGCAGGCAAGACCACCAAATAGTGGGGGACCAAGTCAGCTCTGAATGGGAAGCCAAAAGAGAATAGAACCAGGACTCAAGATTAGGGGAGCTGGGATTTCCTTATTCCTCTGTCCCCATGCCCAACC----CCAGGCTCTTCTGAGAAACTGTGAAGAGAACCACTTACTGGATCTGTGGGATCCCCCAGTGGAAAGGGCAGTGTGGGTCACTCCAAATGTCCATAGGGAGGATGTGGGGAAGGTGCTATTCATCTTCCACTAATCACATATTTGTTTCTTTTTGTTTT--CAGGGCAATTCCTTGAAGAGCTACGTAAGTTCTCTTCTCTCTGTTATAAGCAGAGAATAAAA-----AGCCAGGAAAGGGAGA--------------CAGAAGCAACAAGAGGAAGAG------------------------------------------GCGGG-----------------------------------CTATTGAGGGATCACATTCCCAGAG------GAAAGGAGGAGCTGGAGAGCCTGGG--TGGAGGGA---AGACTCCT------------------CCTGGGAGGTAGAGGGCAAAGAAGCC---------AGCTGTTAGAGACACATTTACAGGTGGCAGAGAAGCTGGAGGCACTCCTATCTGCCACCTGATCCATTCCT--------------------CCTTCACTGCCCCTAAGCAGGAATCCAACCCTAGCTGGTCTCATTGCCCATTCCACAGCAACTGCCCAGTGCCTCACCTCTCAGATcaaccattgaggcaggaatggagacaagatgaccc-------caagggcttttcttctccctagttcaatggttttaTGATACAAACTACTGACATACGTTTTTCAAGTTATTTTCTCCTTCTTCTAGGAAATCCCTTCTGAGTGATGTCACATCTTGGCAGGGGTGGAGGAGAGCCTGGTTGCCCAGGGATTTGTCCTTGGGGACATCTCATCCATCAAGTTGCACACTCACTGGCATCTTTGCTATGGGGACATTCCAATTTGCACTTTCAGGAACACTCTGAATTCCAAGTAGAATTGATTTCCCTTCTTCTGTCATCTACCTTTTCTCTTCATTTTCCCATTTTTATTACCCTTCTTTCCATTTCTCTCTCCAGTCTTCCACCTGGAAGCCCTCTCTGGCTAAGGACAGGCAGGTGCCCCTCTCTCCATCAGAGGACACCTGTACTGGAGAGCAACACAGGATGGTCTCTGCCATGAACTGGAGGCCAGGAATCTCCTCAC-------TGAAAATTACAGTATGGTAACTTTGCAAATGGTGGTTGTTTCTTCCAAGACTCCAGCCCTGATTGCGCAAAACTGAAAGGCATGTGAAGGGAAGGAAGAGGAAGAGTGCAAAACATTGAAGAGAGAGCTGAGTGAGCTGAAGAGTGAGGATATGAGTAGCCCCAACCCAAACCTGGAGATGGGGAGAAACCTACAGAATACTAGCCAGAGCTCCTCCTTGTCTTGGCAGCCTACTAGGGACCTGGGGAAGCAAAAACGAAAGCTGGGCAACATGCCTGCTTTAGAATGTTTTCCTTCTACTTACACATCTTCCACAGGTCTCAGAATCTTTCCTTCCTCTCATCCTT-TTCTCCTATCTTCATATCTATCAGAGTATCCACTGTTTATTC-AACAACTACTACTTGATG---GTCAGACACAAACAAACAAGCTAGGTGCTAATTA s canFam2.chr35 29284170 1800 + 29542582 ttacatttatgatagaagaaa-tgctaaattcagtcaaagcttggtgaaaataaagatgca-tgtttttctcatt-gagttcatgagctccctgaactctgtccacagacCGCTGTGGTGTCCTTGGACCCCAGGTTAAGAAAACCAATAACAGAGAAGGGTGGGTGGGGCTCCAGGGGG--TACATGCTAATTCTGTTC--TGTGGCCACCAACCCAGACCCCCACTTCCTGAGGGTGCCCTGCTGGAAGATAACGCTGTTTGTCCTGGTGCCGGTTCTTGGGCCCCTGCTTGCCTTGATCATCTGCTACAACTGGCTTCATCGAAGACTAGCAGGTGCTGTGG---GGTGGGGGGCAGGACCTCCGAGTGG--GGGGACCAGGT----TCTGA----------------------------------------------CAGGTATTTC--TGTCCTCCTGTCCCCAAGGCCAGCCAACATCAGGCTCTTC--AGAGTCCATGATAAGAGCTACTTGCTG-AGATGGGGGGGCCCTCAGCAGAG-GGGAAGGGTGGGT-----------------------ACGTGGGGAGGAACCTAGTCATCTTCCACCAGCCACTTATTCCCTTCTTTTTCTCTTTCCAGGGCAGTTTCTTGAGGAGCTAAGTAAGTTTTCTCTTTT----TATAAGCTGAGAACAAAACAAGAAGGCAGAAGGGGGGCAGGTAGTGGAGGGACCAGAAGCTCTGAGGGGCAGGGAGCTGGAGAGTCTGGGGGTGGAGGAGCTGAAGAGCTTGTGGGGCGGGGGTGCTAGAGTCTGGGGGGAGGGAGGCTGAAGAGTCTGTGGCGGGGGGGCAGCTAGAGAGTCTTAGGTGGGGGGGAGCTGGAGAGTCTGGGGGTGGAGGAGCTGAAGCTTGTGGGGCGGGGGTGCTAGAGTTTGGGGGGAGGGAGGCTGAAGAGTCTGTGGGGGGGGCAGCTAGAGAGTCTT----AGGTGG-GGGGGAGCTGGAGA---GCCTGGCTGGCAGAGGCTCC--TCCTGTAAGGCAGAAGGGGAGGGCACTCCAATGCCC---AGCCTAACCCCCACTTTGGCTGCTTCCCTTCCCACCCATCCAGCAGCTGTGTTGGGCCTCAGCTGTGAGACCAGCCCCTGAGGTGGGTGCAGAGGCAACAACACTCTCCCTGCCCAGGGCTGTTCCTCTCCAAGGATTAATGTCTTGGC----------AGTGACAGATGTTT--CAAGTTACTTTTTCCTCCTT-TAGGAAACCCCTTCTGAGTGATGCTA--TCTTGGCAAGGGTGGAGGACAGCCTGCTCGGTCCAAGGACTGACCTCAGGGCC-TGGCACCCACCAAGTCCTACACTCACAGACCTCCTCACTACGGGG-CAT-CCAATCTGCATTTCCAGGAATGCTCTGAATTCCAAATGGGACTGAGTTCTCTTC------------------------------CCCTTTTTCACAGCCCACACCTCTCTACTCTCTT-ACTCTTCCACCTGGAAGCCCTCCATGGCCATGGCCAGGCAGGCACCCCTCTCTCTGAT---GGATACCTGTGCTGGACAGTGACACAGGCAGG----------------AAGGTCGAGCACCTCCCCACCCCCCATTGCAAATTCCAACATGCCAACTTCAGATATGGTGGTTGTTTACTCTAAGATGTCAGTCCTGA--------------GAGGTGTG---AGGGCTGCAGGAGCAGGAATGGGAAGCAC------GGGAGCTCAGTGAGGATGGTGCTGGAGCACTGTGTGGCCCCG---------------TGGGGAGCATC----AGAACACAGGCCTGA---CCCCCATGTCCTGC--------------------------------ATAGCTGGG------------------------------------------TCCCCCAGGCTCCA---------CCCCCTCTGGTCCTTGCTCGCCCATCT-CATACCTGTCCAAGCATCCACTGTTTCCTCCAGCGATTACTACTTGATGTCTATCAGGCA--AAGAAACAAGTCAGGTGATAATTA a score=63217 s hg19.chr6_ssto_hap7 980672 1438 + 4928567 TAATACAAGTTTTCATAAGCACACTTCTAACCCCTTGTCTTTTATGTATTTCCTTCCTTATCCACGCACCTGTCTCCCT--CTACTCCAGCCTCATTACCCCAGAGGTCAGTCCTCAGGAAAACTAAACACAAAGAAAGAGCTCAGTCAGAAAGGCCATTTATTTATGTTTCAAGATGCTCACTGCCTCCTTTGTTTTGTCTCCTTTGCAGGCCTTCTCTCT----TAGGCCTCTTCTCCTGGGGGTATGGATCCTGGGGGGAGATTGATCACCTCCATGCTTCCATTCCTCCCCAGCCATAGTGGGGACATCATGAGAGAAGCCAAGCCACTGGCCCAGGATCACCCGGCATTTATGGTGGCTGCTCTGGCACAGGTCCTTGCCTTTATAGCCCCTCCAGTGATCCATAAGGCCCTCTTTCTCCCCAAAGGAGAGGTCACAGATAGGGCAAAGGTAGCTCTTCTGCTTCCAGTGGGTCTGCTGGTGTCTGACCAGCCTGGAAAATGAGCTGAAAGACTTGCTGCAATGGAAGCAGTAGTTGGGCGGCTCTGTGAGGTGGGCCTTCTGGTGTCTGGAGAGATAGGATTTCTTGCTAAAAGTCAAAGAACAATGGGGGCAACAGAAGACATTGAGTCTTGAGGGCTTCACTGGATGAGAGTTGGATCTGGCATCCTGACAGAGGGTTCCAGTGATGGGTGCCTGGGTCCTGGT---------------------------------------CACAGG---TGCTTGGTTCTTAAGTACAGATGCCTGGTTCTGGGCCATAGGACCCTCAGTTCTAAATATGGGTTCCTGGGACCTGGCCACTGGTGCATGGTTCACATCCAAAAGCCCCTGGATGGACCTCTGGCTTCTGGCGATGGGTGTCTGGAATTCAGCCTGGGTGCCTGGAATCCTCAAAGTACACTCCTGGTTTCCATCCACTGGCTCCTGGTTTTGGTGTATCTTCTGGTGGCGTTTGAGCTCAGACTGGTCCCGGAAGCTCTTCCCACACACAGAGCATGAATGGGGCCGGTAACCCAGATGGACGCGGCGGTGACGACTTAGTCCAGAAGCATCACAGTAGGTCTTGTCACAGAGCGTGCAACAGAAGGGCCTCTCCCCAAGATGCATGCGTCTGTGATAGCTGAGGGACTTGGGGCTCCGAAACAACTTCCCACACTGACTGCAGCTGTTAGTCAGCTTGGGATTGTGAACAAACTGGTGGCTATAGAGGTAGGAGCGCCTGCTGAAACATTTGCCACAGGTGTAGCAAAAAAAGGGTGGCCCAGCCTGGGATGCTTGAAGCACCCGGGTCCTGTCCATAGTCCCAGCTGGGGCAGATAGGGGGCACTGGCCGGCCCCTCTGCATGCAAGGAAGACCTTGTCATCACTAGTCCCCTCATCTCTCAGACTGGGATGTTGTTCTCGAAGCTCTTTCTTCTTGCCTTCTACAGTGAATGAGGAAGAATA s canFam2.chr35 29285973 1434 + 29542582 TAATACGAATTTCTGTGTGCACGTCTC-ATCCCCTTGTGTTCC-TGTGTCTCCCTGGTGACCC------CTACCTCTCTGCCCACCCC-GTCTCCTGAGCCTGGAGGCCAGTGCGTTGGAGAAGCAAACATGAACAC----CTCCATTGGG-------------TGTGCACTGAGCCCCTCATGGCCTCATTTGCTCTCTCTCCTCTG-GTGCCTCCTCCCCACCCTCCCCACCCTCTCCTGGGAGCCTGGATC-TGGGGGCAGATCCATC----------------TCCTTCCCAGCCCAACTGGCAGCACCATGAAAAAAGCCGAGCCATTGACCCAGGATGGCCCAGCAGGCCTGGAGATTGCCCAGGCACGGGTCCATGGTTTTGGAGCCCCCCCAGTGGCCCATGAGGCCATCTCTATCCCTGAAGCAGACGTCGCAGACAGGGCAACGGTAGACCTTCTGCCTCCAGTGTGTCTGCTGGTGCCTGACCAGCCCTGACAATGAGCTGAAGGACTTGCCACAGCGGAAGCAGCAGCTCGGCTGCTCAGGGATGTGGGCTTTCTGGTGGCTAAAGAGATAGGCTTTCTTGCTAAAAGTCAGAGGGCAGTGAGGGCAAGAGAAGAC-CTGATTCTTGAAGGCTTGGTGGGA-GGCAGTTGGACCTGGTATCCAGGCAGAGGGCTCTCATGCCGGGTGTCTGTGTCCTGGTGCCAGGCCCCAGGGTTGCACCAGCTGGTGCCCGCCATCCCACAGGGATCACCTGCTTCCTATCTATGCCTGGCTGGGTCTGAGCCATAGGACCCTTGTCTGCAATGATGGGTTCTTGGGTCCTGGTCAGCAGGGCATGGTCCACGGCCACAAGCTCCTGGCTGGCCCCCTGGCTCCAGCCAGCATGTGTCTGAGATCCAGCTCGAGGGTCTGGGGCCCTCACAATGCACTTCTGGTCTCTGGCCCCCAGCTCCTGGTCTGGGTGTATCTTCTGGTGGCGTTTCAGCTCTGACCGGTCCCGGAAGCCCTTCCCACAGAAGGGGCACGAGTGGGGCCGGTAGCCCAAGTGGACACGGCGGTGGCGGCTCAGCCCAGATGCATCACAATAGGTCTTGTCACAGAGCGGGCAGCAGAAGGGCCTCTCCCCAAGATGTATGCGCCTGTGATAGCCGAGCTCCTTGGGGTTCCGGAAGGACTTCCCGCAATGGCTGCAGCTGTTGGTCTTGTTGGGAATGTGAACAAACTGGTGGCTATGCAGGTTGGAGTGCTTGCTGAAAGTCCTGCCACAGATGTGGCAGAGAAAGGGCCTGCCAGCGCGGGATGCTGGGATCACAGGGGCCCTGTGTGGGGTCCCTGCTGGAGCAG--AGGCTGCACCTGC---CCCCCATCCAT-CAAGGGAGGCCTGAGCTCTACCAGCCCGGTCATCTCCCAGTGCCTGAGTCTCTTCCTGACATGCCTCCTGCCTGCCGCCTGCAATAGAGGAGGAAAAACC a score=964 s hg19.chr6_ssto_hap7 982467 18 + 4928567 aaggagaagaaggagaag s canFam2.chr35 29287407 18 + 29542582 AAGGGTCAGCAGGAGAAG a score=2876 s hg19.chr6_ssto_hap7 982593 154 + 4928567 CTCCAACACAGCACTCCATTCAGCC---TAACACACTTCTTGTCTCTGCCCTTGCTCTCCCACCCAACACATTCATCCTTACCCTTGGGCCTCATAGGCTAGAAATAAGAAGAAAAAAAGAAAAAATTGGCTTTTCAAATTAGAAGCAAATAAAAAG s canFam2.chr35 29287425 144 + 29542582 CCCCTGC-CAGCTCTCCTTCCATCCAGGCTACGCAACCCCAACTT----TCTCACGCGCCCAACCAACACCGGCTCTCTCACACTCAGACCTCTCAGGCTTGAGACAGG--------AATGGACTTTTGGGTTTTCAAATTAAAAGTGAATAAAAGg a score=10080 s hg19.chr6_ssto_hap7 982749 452 + 4928567 AACTGGAATCTTTCAACACTGTCAGAAATGTAAATTTTAACTTACAACAACACTTCTTGAAATCTATCTTATCTCATTCTCAATATTGCTCAAACTCCCATAGACAATCCACAGACACCCACATAataatgcatcatgaacactgggccacttgagggtgaaaagaggtgttattaataatcaagctgggatgagaagtataaaccaggactgtcctggaaaaccAAAAAGTGTATCAGCCTGGCTTGATATCTCTCTCA-ACTATTTACTACCAGGGACAAGCCTCCCTTACTCCAACCCAGCATGAAACCTGTCTCCTTTGCTTCTCTTTTCTCTTGGAAAGAACATTTTAATCAGAGCACTATCATGGACATAAGCAACTTTCATGTCATCTCTCAATCTCTAGAAACTGAAGACATCTACTTCTCCTGAAAGACTTAGATCTTCAGCCA s canFam2.chr35 29287787 388 + 29542582 AACTGGAATCTTTCAACAAGATCAGAGAAGAGAACTTTAGCCTATACCCACATTTCTTGAAATCCATATCTTCTCACTTCCAATATT--TCACGCTCACACAGACAGCCCCAGGTGACC-------TCATGTGTCATACAAATGGGGACACCTCA--GTGAAGGGCGGTGCCATTCATAATCTGGCTGGACTGGGAAGTACAACCTAGGGC-----------------AGGTGC-TCAGCGCAGCCTGATAGCCCTCCCCTTCTGTTCTGTCACAGGACCAAGTCTCCTTTCCTTGAAGTCAGCACCAAGCTCATGTCCCTACCATTCCTGTCCTCTTGGAAGGGATGT--------GAGCACCCT-ATGTGCAT--GCTGACCCCTTGTCACTTGTC-----CTAGAGAATGCAGGTATCT--------------------ATCTGGAGCCA a score=32754 s hg19.chr6_ssto_hap7 983516 1069 + 4928567 AGACTTGGATCTTCAACTTGAAGTCAAGGGACTTGAGCCTATGATATTAAGCTCTCTTTCAACTCCAAGTCTGACCAGGCTGGACAGAGGTACACTAGGAGAGCATCTATAGAGCATTCATCCTCTTCATCAGCTCTCCATCCTTTCAGGGGTTATCCTGGGCCCTTTTCCCCTTCCTCCCTGCTTGGCAATTCTTACCTGAA---AGGCCTTCTGTGTTTGGGAGATGGA---CAAACT---CTCTCCACTGTTCCTCTTCTTGCTCAAGCTTGGTGATTAGCTCTGGCTTATGCAGAAAGATTCTGGCTGATGTGTGGGAATGA--GAAAGAGTTGAGTTGGTCCCAGGTATGGCCCCTTCACATCTGATGGGGACAACAGGCTACCT---CCTGTAGCCTTTGTTTAAGAACCATAACCTGGGACATGTAGATGCGGAAAGGAGACATTAAAAGGccagctgctagcaaagtacctggttctcaggagtgacttagtaaatatttgtttgatgaatggaAAAATTTGCATATTTTGAGAACACTGTCATCATGTTACAAGTGTTATCTTTGCCTTCATGCAGGCTATCATTTCTTCTCT--TTACCACTGAGCTTAGTGACTCAGATCTTTCACACCTGGAAAGCATAGAACCAGGGGTCAGTGAAACTAATTGTAAGCTGATCTACCTGTCCAGGGAAACCAGATGTTCCAGGGCCCTTAGGACAGGGGGCTTGCTGAGGGAAGCCCAGCCTCTTACCCACAGATGTTAGATTCTTAAAGGTTTCCGACATAACATCCTGGTAAAGGACCCTCTGGCTGGCATCTAGACAGTCCCACTCTTCCTGGGTGAAATTCACTGCCACATCCTCAAAGGTGACTGGCTTCTGGAAGAACAGGAGAGACTCAAGAAGTTTATATAAATATATAtgtgtgtgtgtgtgtgtgtgtgtACAAGATTAACATCCAGTCTCAAGATTCAGAGAATTAAAACCTAAGAGAAAGATAAAACCATGGAAGGAAGAGAGAAATATTAAAAGACAGACACAAGGCCAGCAACTGTGAAGTATAGAAAGGAAAGGAg s canFam2.chr35 29288175 939 + 29542582 AGGCATG-----------------CAAG-----TAAGCAGGTGGCCTCAAGCCCTCTTGCAGCTTCAGGTGGGACCAGGT--------------------GAGGATGTGCGGAGCCCTGGTACCAG--GACAGC-CTCCTCTCCCCCAGGGCGTA-CCTGGGCCCTT---ACCTGCCCCCCCGCCTTTCAATGCTCACCTGAAGGGAGGCCTTCTCCATTCAGGAGACAGAGCTGGAATTCTGCTCTCTGCTGGCTTTCTTCTTGTCCAAGTTTGATGATCAGATCTGGGTT----AGATAGATTCTGAGCTGGGGGTGGATAGGACCGGAAGAGTCAA---GGTCGCAGGCTTGGGCCCCTCATACCCAGTGGGGACAACAGACTACCTTCATCGGTGTCTGTGGTTTAAGAACCACAATCTGGGACATGCAGGGGCAGGGAGGAAACC------------CTCCTAACGAAGTTCCTG----------GCAACTCAGTAAATACTGGCTTGGTGAACAGGAACATTTATGAAT-----------CATTGTCATGTTATACGTATCATCTTTGCCCTCAT----GATTTCATCTCTTCTCCTGTTACC-CTGAGCTGACAGACCTAGATCTCTCCTAGCTGGAGGGTGCAGGA----GGTATAGAGTCTGTACATGTGAGCTGATGCACCTGCCCAGGGAAGCTAGCGGTCTCAGG---CCTGGGAGAGG-----CGCTGAGGAAGCCCCAGCCTCTTACCCACAGACATCAGGTTTCTGAAGGTCTCAGACATAACATCCTGGTACAGAACCCTCTGACTGGCATCTAGACACATCCACTCTTCCTGAGTGAAGTTCACGGCCACATCTTCAAAGGTGATTGGCTTCTGCAAGAGCAAGAGAGACTCGGGGAGTC--------------------------------TGTATACAAGACAGACACCCAAGCACAAGAT--------TTACAAACCGGGAGAGAACTAAAACCATGGAAGGCAGGGAGGAATAGGAAAACACAGGTGCAAAGTCTGCAATGTTATTCCATACAAAGGAAAGGAA a score=17955 s hg19.chr6_ssto_hap7 984908 946 + 4928567 AGAAAGGGAGAAAGATAAGATGTGGGGGAGAGGAAAGAGGATATGCAGATATGCAGAATATAAACAGGAAAGCAAAGCGAAGGAAAAAATGCTGCCACTCTAACAAATTTCAGGAAGTACTCCATGAAGGATGCCA-GGATGGTGCGGGAGATG-----------------GAGAAAGGTCTTGCAGCTCCTTTTTCTGGATGTCGTTCAGTCTGGAACAATCTGAGATTTCATTTGACCTGCAGGCAGGAGTATGTATGAAAGAGCTCCTGGAGTCCAGGACCTGGACCCCACCTCTCTCTAGCTTAGTCTCCTCACCTTCTTCACCCGTGCCTCCCTCCAGCAATCTCTCTTCATGGCTTCCTGCAGGGTGGCAGCTACCTCGCCCACCCATGGGAGCGTCTTCTGTACAGGTTCGATTGGCTTCAGCTGTTCAAACATCTTCTCTTCTGTGGTGTCTCTTTCTAGCTTTATCCACTCCTGGCCTGGTGCCCAGGCCTGACTGGATTCCTTCCTGGGGCTATCTACCTCCCAGTAACTGGGCAGATGGAGAGGCCCAGCAAAGGCCCCAGGGTTTGATGTGGCTTCCTGTGACAAATGTATCTGCTCCAAGAGGCTGTCTTCCTTTTTTGTTCTGCTGTCCAAATTCTCCTCTTCCACAATTGAGAACAATTTTGCTTCCCTCAAAGCTGGGCCACCGAGTTCAGGGCCCTGGTCACCCTTGGCTCACCAGCTGCCATTGTTTAGTAACAACACCAGCCTGGGCTAGG--TGTCTGCCGTCTGTTCTAC---------CCTGCTTCTAGAAACCTGAGGTCAGAGAAAAACAAAACATATCAGCAAGAGGGAGGGTAAGAAACAGCTTCCTTATTTGGTCAGGGAAtgccagcagttactaaacccctacagtgtgccactggatgctctcagca------atgaggtaacaattactggccctgtcttaag-gacctaa s canFam2.chr35 29289118 798 + 29542582 CGAGAGGCAGGAAGAGATGATG------------------------------------------------AGCATGGGG-----------GCTGCCATTGCACCAACTTT-GGGAAGTCCTTCCAGATGG--GCTAGGGGTGGTGTTGGGGGTAGGGGGAGTGTGGAGGCTGAGAAAAG-CCTGCAGCCGCTTATCCCAGGTGTTGTTCAGCTTAGAACAGTTCGGAACTCCATGTGACC-ACAGACTGCAGCA--GACGAAAGGACTC---GGGGTCAGGACTGGTGCTCCC----------------TCTCCTCAC---CTGCACCCATGCCTTCCACCAGCTCTCTCCGTGTTTGGCTTCC----------------CCCTGCC--------GGAGCAGCGCCTGCAGCAGTGCCACGGAATCCCGCTGTGCAAACACCTCCTCCTCCGTGGTGTCTGCCTCTAGCTTCATCCACCCTGGGCCCAGGCCCCAG---TGACT---------------ACAGTCTGTCTCTCGGTCACTGCGCAGGCGCACCAGCTTTGCAGAGGCCTTGGGGTTTGGCATGGTTTCCCTGGACCAATGCCTCTGCTCCAAGGGGCTGCTGT--TTTTCTGCTCTGCGGTCCAAATTTTCCT---------GTATGAGGAGTGCACTTTCCCTCAAAGCCGAGGCCCAGGGCTCAGGGACTTG--TCCCCGTGGCT---CAGCCACCCTGGCCCAGGGATGCCGCCTG--GGGGCTACGAAGATCTGCCTTCCATTCCACTGGCTGCTGCCTGCCTCTAGAGACCTGAGGTCAGAGAGAAACAGAAC------------------------AGCAGCTTTTGTCCTGGCTCAAAGAACAGCAAGAATTACTGACCCCC-------CGTCTCTGGG-----TCAGCAGGGCCCGGGAGGTAATCATTACCGACCCCACCTCATGAGACCTAA a score=3017 s hg19.chr6_ssto_hap7 985956 140 + 4928567 atcatgtagctggggtaaccaggcta-ggatctgtcacagatcacctcgagtgagtctctttattctttctgacttggtttcatcag-aaatgtgagaataaaggagacactctctaagatctcttccatgaccaaaattat s canFam2.chr35 29290014 132 + 29542582 ATTATTCTGCAAAGACAACAGTGCTCTGGACCTGTCACGGACCACGCCGGGCAAGCCTC----TTCCTTCTGATCTGCTGTTGCCAGAAAATGTG-----GAAGGAGA-ACACTCCAAGACCCATCTAGTGCTGACAACTAT a score=10512 s hg19.chr6_ssto_hap7 988566 1156 + 4928567 CCCACCCTTCCAGAATGTAAATCCTCTGAGGGAATGTGTCGTCGCCATCTTTCAGTCCTTTGAGTGCACCCAGTCTCTCTCCAACCCAAA--ACCCT------TTATCCACAGCAATTCTGAGAATGATGAGAATCCCCCTCACCCCTCACACCGCAAACAGTTGCAATGCTTAGTGGGATTCACCCTTGTCGTCACCAACCCTGCTACTCCAGCCACGTGAGTTTTCCGCCTGTCAGCCAAGCAAAATGGCCTTCCTGCAGTCGCACGGCCCTTTGG-TCTCTGCTCAGGGCTTCGGGGACCCTTTCCAGCCATTGCCCTGCACCTACCCACCAGATCGCCGCCCTGGTGGGCGCTCCTGGCCCTGTCCTCCGCGCTTAGTTTGTCATTGGGCGCCCAGATCCGGAACCCCAGCCTCGAAGCTTCCGGTGGCCGGGAACAAAGCCGGTTTTGCTCACTGTCGCCTGGCAAAGCAGGCGCTTGTTAGCACCCACTGAATGCGCTTATGTGCTCAGAAACGGTCCCATTGGTTGGG-ACTACC-----TTCCCCGATGCCCATCCG-CCCAGAATCTTCCTTCTGGGATGCCGACTTTTTCAACACGTGCCAGGAGCCCTTCCTCGGCCCGGAATCCCCAGAGTGCCCACAGTGGACAGGGCACCTGGATACACCCCAGACTAACCCACGT-TTCCCCGGAGGACCCCAGAGGTTGGAAGCCCCTCCAAGATTAGGGGCGCAGTGCTCCCCTGGCCTGCGGAAGAGTCAGAGGAGTGGGGACAACATC-CAACATCAGCCTCTACTACCGCTAGCGCGACTCCCCGCCGCCGCTCTACTCACCTGACGCGCGCAGTGGACCGCGATTTAGGGGCACAGGGTCTCCCGGGGACCAGCGGCTGGAGCGCTCCGGCCGAGCACCCGCAGTcccggcgccgcggccccaccccggccccgcccTCTTCCGCTCCCTCCCAGTCATCAGGCCACCGAGAATGTGCCCCTTGACCCAGATGAGAGGGTGAGCCCGCCAAGGTCAAGC--TTCCCATCCTAAGAATCACAGA-----CAGCCCGGCCATGCACCACCACTTCGAGCCTCCGACCAACTGATAGCTGCTGGTCCCAAGTAGCGCTAGGATTTTCGCTTTCCCAGTCTTAATTGACTC-TAAAAGAAGAAGA s canFam2.chr35 29290699 928 + 29542582 CCCGCCCTCCCAGAGCCTAAATCCCCCCAGGGAATGT---GTCGCCATCTTCCC-TCCCCAGAGAGCACCCACCTCCTCTCCAACCTGAACTACCGTCAGCAGCTTCCCACGGCAATTCTGAAAAAGGCAGAAGGCCCCC--------CACACC---------TGCAGGGCTCTGAGGA------CGCTGCCAGCACACCCCCTCCAGTGCCTGCACTGTG--------GCCT-TCAGCCATGCAAAG-GGCCTT-----AGGCTCTCGGCCCGTCAGCTGTCTGCTC---------GGGTCCCTTTTCAGCCCCTGCCCGGCCAGTGATCA----------------------------GACCCTCTCGTCCTCA--------------GGGTGC------------------------AGCCTCCCACAGCAGGGGGGACA--TGGAATAGCTCGGCGGTGC--AGCGATGCA-------GTTCGCTCCCAGGGGATGAGC---------CGGAGGTGCCCCCGTCCGCCGAACAGCACCAAGGAGGCCCTGAGACCCATCTGCCCCAGAACTTCCCCTCTGCGATCTCTGCTTT-----------------------------CCCGGG--CCCGAGTGTGGCCTGAGCGGA-GGTGCCCCAAGCCACATCCCGA---TACCTAAGTGTTCCTCGGGG---CCTGGGGGTTGGGAGCGTCCCCATGATGACGAGTG-------CCCTCTGCCTGCCTCAGGGTGGAGGAGACCCGGACAAACTCTCTGCATCTGCCTCCATCTGCACAAACTCAATCCCCAGCGGCC---CAACTCACCCAC--CGAGCAGT--------------GAGGACGGGGCCT--------CCAGCCG-TGGGGCGT------------ACAGCAGGCCCGGCGCC----CGCTATCCCAGCC---GGCTTCTGCGCACCCTCCGCATCCCCTG----------------TCCGTGGCTCAGAGAAGACTGCCGACCCGCCAAGGTCAAGAGGTCACCATCAAGGAAGCCAAAAAGGGAGAAACCCCGCCCCTCACCAC-----CTACCCTCCCACC----GGCAGCACCAGGTCCCACCTAGTGCCAGGATCTGGCCTTACTCCCTCTCAATTTACTCTTGAAACAAGAAGA a score=9677 s hg19.chr6_ssto_hap7 994107 286 + 4928567 GTGGGGTCCACTTGTAACCTGGGAACCACTTGTTTTGGCCTGGAAACCTCGCTCTGTCCCGAGGTCAGAATCCACGGTCACTAGGTGGAGAGGAAACATCTATGTCAGCGTGGATTT-GGGAAACACTTCAGATTCCGAGCCTAACACGGGACTGGGGCGCCCCCTTGGGTACGT--TGTCCTGTCCAGTTGCTGAAAGCCAAAGGTGACAATGGGGAGGTCTCAACCTGAGGAGGAGGCCAAAAGAG--TCCGGTCTTCTGTTCTCAGCCCGGTGACCACACACAAGTGC s canFam2.chr12 71542078 282 - 75515492 GTGGTGTTCACTGAGATTCTGGGTACCAACTGTTATGGCCTGGAGACCACTCTCTTCCCTAAGGCCACAGTCCCTGGTTACTCAATGAGGAGGAAACACCAATGTTAGTGTAGATTTGGGGAAACACTTTATAAGCCAAAACTGACTGGAGA--GGCGTGCCCCCTC---TATGTAGAGGCCTATCCTGGTGCAGTAGCCCAGGGGAGACCCTGAGGGGGTCCTGGCT----GAGCAGGCAAAAGGGGAACTCAGGCTTTTGTCCTCAGCCCTGTGGCCACACAGATCTGC a score=14239 s hg19.chr6_ssto_hap7 1010397 774 + 4928567 ACAGGGCTGGGCCCCTTAGCACCTGCCCTTAGCTCTCCTTTCCCCAGGTCCCTAGAAACCCCCTCCTGATCTacacacacacacacacacatgcacacacaACTTCTAACAGGGCCCTTCTCGTTTTTCTCTCCCCCCTGGTTCCTTCCACTCTC-------CCCCTTCTCTTATGATCCATTTCATCTCC---CTTCTGCTCTCTGGACCA-------------AGGCCCCAGGCCC---GGACTCCAGGCTTGGAGCTCACAGGCTGATTCCTGGGA-----TGAGCAGCCTCCACCTGCAGGAGCAGCAGCAGGAACAAGGGAGGGGA---CAGGAGGGCAAGGCCCCAT-TTTGGAGGCTGAGGGACTAGGTCATGTGGTAGCAATGGTTTGGGGGTGGATGAGCCCCAGATATG--ATCCCACTGTTTTGGCCTGGAGGTATCTCTTCCCTAAAGCCAAAATCCAGAGTCACTCAGTGGTGGGAGGAAACGTCAGTGTCAACATGGATTTTGGGAAGCTGGATGGACTCAGAGCCTGACTTGAGATCGGGAACCCCCTTGTATGCAGAGCCCTGTCCAGGTGCTGGGAACAG---GAGAGCCTGGGAGGTCCTGGCTAGG---GAGAAAGGG-GAGCGGGGTCT-CTGTCCTCGGCCCTGTGGCCACACGGGGGCGCCGCTGCGCTGCTCTCGGATTCTGAGTGCTC-TCCGGGACGGGGCTGCGGGCTGAA---TGGGCAGACGGGGCTGAACCTGAG---------GTCAACCACGCTGAGACGGAGGTTCCTCCTGAGCACCTCTGGAATCCACAGGACTCAGG s canFam2.chr12 71487878 772 - 75515492 ATAGGGCTGGTACC----GCATCTGCCCTTCACTCTGGT----CCAGGACCCAGAGAGCCCTCTCC--------------ATGTAAACAGGTGTTC------CTTAGACCAG--CCCTTCCCATGCCCCTCTTCTCCCTGACTCCTTCCCTCCTTGGAAGCTCTTCCCCTCTCATGTTCTTATTTACACCCTAGCCTCACTCCCCAGGAGCATCCTCCCTTTTCTAGACCCAATGCACTGTGGGCTTCTGCCCCTCATCCTTCATGCTATGTTCTCAGACTTACTGAACTGAGTCCAGCCCCAGAGGCAGCAGCAGAAAGAAGTGACAGGAACTTAGGAGTCCTAGGTCCTATCTTTGGAGACCG-GGCACTCAATTTCTTTGT------------GCGGTCCATA----CCAGATCTGGGAACCAGCTGTGATTGCCTGGAG--AACTTGCCCCTGAGGGCGGAATCAGTGATCATGCAA-------AGAAAACATCTATGTTATTGTGGATTTGGGGGAACATTTTGCAACCC-AGCCTGACATGGACAGGGGCAACCTTTTGTGTTCAAAGCCCTGATCTGGTGTTGGGAGCAGAGGGAGACCCTGGGAGGTCCTTGCTGTGCAAGAGAAAGGGAGAACTTGGTCTTCCAACCTCATCCCTGTGACCACACGGGGGCGCCGCTGCGCTGCTCCTGAATTCTGACTGAGCAGCCTGGGAGGGTCT--GGGCTGTAAGTTGCTCAGGGGAGGCTGACCTGGAGCTTGGGAGCATCATCAATACTGCCACAAAGAAG-CTTCTGAACAGCCCTGGACTCCACAGGTGTCAAG a score=30465 s hg19.chr6_ssto_hap7 1015852 569 + 4928567 TTTATAGCCAACAATAAAAAACTTTATTAAAAATGTTGAAAAGCATAAAACGGTAATTATAAATTAGCAAACACCCAACAAGAAAAGCACTTATTTTCTTTTCCTTATACAGTACAAGAAAGAGTAATTGGGA--TCTCATTCACTTTCAGCCACCAT-TTGCCCTAGATGTCCTTCACTCAAAACAAGTTTTTAGCTTGTGTTTTTGGAGTGGAAACTCACATGGCTACTAAGAAACAACTCTAAAAATGTAACTTAGACACTCAAAATTCCATGTGCCATGTTAACATGTAA--TGATGGTTCATATTACAGCATCTCACAATAG-GTAAGCATTATTTCCAAAGTAAAATTAAGTCACATTTGTGGTTGCTAGTGAATGCGGCACAAATGG--ACCCTGAAGATTCAGGCATTGTTCTGCTCTGGAGTAGGACATCTGTGGCTCCAGCAAACTGTACAAAGGCTTTTTTTTTTTTTTAATGTATCTTCCGTGATACTTCAATTATTTCACCTTATTAATCATTTTCTTGCAAACAAAACTGAAAATATCAGTTCATAATGTGTTTCCATACACC s canFam2.chr25 34625068 561 - 54563659 TTTATAGTTAACAATAAAAAACTTTATTATAAATGTTGAAAAGTATAAAACAGTAATTATAAGTTAGCAAACACCCAATTAAAAAAA-AGTTATTTCCTTTTCCTTATACAGTACAAGCAAAAGTAGATGAATATTATTATTCACCTTCAGCCACCTTACCGCCCTACATGTACTTCACATAAGATAACTTTTCAGCTTGT--TTCTGGAGTGAAAATTTATATGGATACTAAGAAACAACTCTAA---TGTCAA----------AAAAATACATATGCCATGTTAACATGTGACTTGATAGCTCATACTGTAGCATCTCATAACAGCAAAAGTGTTATTTCCAAAGTAAAATGAAGTCACTTTTGTAGCAGTAAGTTGATGTAGCACAAATGGGTATATTTAGGATTAAGGCATCTTCCTGCTCTGGAGTAGTGCTCCTGTGGATCTGGCGATCTGCACAAAGGCTTCCTTCTTTAAAAAATATATCTTCTGTCATATTTCAATTATTTCATTCCACTGATCATTTTCTTCCAAATAAAACTGAAAATATCAGTCCATAATACGTTTTTATACACC a score=4086 s hg19.chr6_ssto_hap7 1016421 67 + 4928567 TTGCCCTTATTCAAATG----GTTATGAACAAGTGGTCTTCCATTTTCTATTGCCGCTGTAA-----TTATTTGTT s canFam2.chr25 34627055 76 - 54563659 TTTCTCTTATTCAAATGATTAGTTATGAACAAGTGGTACTCAATTTTCTATTGCCACTGTAACATGGTTATTTGTC a score=7630 s hg19.chr6_ssto_hap7 1016488 117 + 4928567 CCTGATCTGGCAACACCTTCTTCAGCTCCTTTCTCTGGCCACCGAGATTAACAGTCCAACAAGCGGTCTTTTGATTCACTAAGTGGCTTAATAGGACAACGTTGATTTGAGCCAATA s canFam2.chr25 34628438 117 - 54563659 CCTGATCTGACAGTGCTTTCTTCAGATCCATTCTCTATCCACTGAGATTCACTGTCCAATAATCGGTTTTTTGATTCACTAAGCGGTTTGATGGGAAAGGGTTGATTTGAGCCAATA a score=6140 s hg19.chr6_ssto_hap7 1016605 94 + 4928567 CTTCTGGCATGTTCATTTCAATTTGTAAC-----TTTTTTCTGAATTCATCCCCACAAGGTGAGCTGGAAAACTGCAACCATAACCAAAGCTAGAAAAT s canFam2.chr25 34630012 99 - 54563659 CTTCTGGCATATTCATTTTGATTTGTAACAGAAGCTTGTTCTGGATCCATCCCCACAAGGCGAGTTGGAAAACTGCAACCATCACCCAAGCTGCATAAT a score=4674 s hg19.chr6_ssto_hap7 1016699 183 + 4928567 ACTGGAAGTAGCCAATATTTCTCTTCATCACCAAAGACTGGTCTCTAATTTTTACTA-------------------------TTGTTC------------------------------------------TATTTTTTCCAGCCAGCCAACAGTAGTAGCTGAAAAGCGAGAGCACACTGATGAAGAACACTGCGGGCACAAAGAAAAGGAAAAGTATGTGGAGCTTTGC-TGTGTATCTCTTAGTTCATT s canFam2.chr11 14480247 251 + 77416458 ATGGGTAGCAACCAGTACTTCTTTTCATCACCAAAAACTTGTCGCATGTTTTTACTGAAACCCAAGCTGAATCCATTCTTATCTGTTCCATGTCGAAACACGGGACTTCTAAATGCCTCTAATGTAGATTTATTTTTGCTGACTAGCCAACAATGATAGCCAAACAGAGAAGACAAGCTGACAGAAAACATAGCTGCAGCAAAGAATAAAAACATAATATGGAACTTGGCTTGAGTATCGGGTAGGCCATT a score=3049 s hg19.chr6_ssto_hap7 1017013 64 + 4928567 GAGTTGTCCTGCACTTCTGGAATCAT-CTTTTTGGTCATGGTGGCTACTGCTGTACTGTCCTTCt s canFam2.chr3 65097007 65 + 94715083 GAGATGTCCTGCACTTTGGGAATCATTCCTTTTAGTCCTGGTACCTCTTACTCAATTGTCCATCT a score=4239 s hg19.chr6_ssto_hap7 1017628 372 + 4928567 TTTCCTTCCTTTTTTCTTTCTTTCTGTATCTTGTTGCTAGGGATAACTTTGCCCCTGCTGGCAGCATGCCCCTGAGGA--------TGGCACCCTGTGGCT-GGCGTCTTCCTTGGCTTGGCCTCGGGTCACTAAGCATAGCCCATGGTAGGAGGTTCTGAGAATGAGTGGCACTGCCTTGTGCAACGGTCCCCATGGGAG---------------------TGGCCCACAGGTGCTTGCATCTGTGGCATTTTCACAACTGTTTAAAAAGACTCAAGAATGTACTGTGGGAGGAGAGCAGGTCTGGAGACTCACCTGTGTCCCCCACCTGCTCATCTGCATGGCCGTGTGCCTGACATGGTCAGAAATGAGAAATGCTGCTGCCC-------------CTTTGCAAAGCACTAC s canFam2.chr3 65097072 325 + 94715083 TTGCTTCCCTTTCTAGTGTC-------------------------ACTTTGCCCTTGCTGGCATCATGTCCCTGAAGAACTGAAGGTAGCACGTTAAGATTTGGGATCTTCCCATGCCCAGCCTCAGG------------------------------------------ACATTGTCTGGGGCAACTGCCCCCTTAAGAACAGGACATGTTAGGAGTCAAATGGTCCACAGGTG-TTGTGCCTGTGGCATGTCTACAGCCATT-GACAGGAGTTACAAAGGTGCCATGGG--GAGAACAGGCATGGG----TCCCTTTGCCTGCCACT---------------CTGTGCATCTGATGCCACGAGTCACAGGAAATGCTCTAACCCTATGAACACGTTTCTTTGCCAGGTACTAC a score=5533 s hg19.chr6_ssto_hap7 1018001 134 + 4928567 TAGTTTTTCTCTTCTTGAAGGTGGTGGCACGATGCCCAGGTTGAGATGGACGCAGGAGTCAGCATCCTAAAGTAAAAGGAGAGACTTTAACAGAAATACCTGAGCTTTTCAATGAGAATGAACAGGGCCTTTTA s canFam2.chr3 65097551 112 + 94715083 TAGTTTTTCTCTTCTTGAAGGTGGCAGCAGGTTGTCTGTGTTG---TGGATGTAGGAGTCAGCACCTGAAGGTAAAGTGGGAGGCTTTGACAGGAGCGCCTAAGCT-------------------GGCCTTGTA a score=14053 s hg19.chr6_ssto_hap7 1018242 561 + 4928567 AGGAGAAGGTGTATGGGAAGCTGGGACCCTGGCCCTGTGCAGGGGAGATACAAGGTGCTTCTGGGGAGGCTGCCGCCATCTGGGGCACTGGCACATGGGGCACAGCAGGGCTCGCCTTCCTGATGATGCCGCCTATCCCAGTTGCCCACCAGAAGTT-GCAGTGCCCAGATTAGTTTTGTATTGATGGaaattaaaaaaaaattatattacataattttatGCTTTTTGAAAATAGCTAATAAACTTTTATGGCTAAGTTGTTAGTAATGGTAATCTCTCTAATCTGCTTAAAGACGGTCAAATCT-GCAGGGTTCCCATCTCCA-CTGGACA---CCTGTGCTTC-CTGTGGGGTCTATTTTCCAG------TGGCTTTCCCTGTTGGTTGCC-CCTGTGACTGCTGACATCCTGCCTTCTGGTGGAAACCACACTCTTCCTTGCCCAGTGAGGGTTGGAAAATTGGATGACTAAACTCGACGAAGATAGCAAATAACATTTGTTC---TGCGTGGGTGCCATCATCACCTGCACTTGAAAGCAAGGCTGAGGTGCAGAAGACACAAAATGTGGCCA s canFam2.chr3 65097663 493 + 94715083 GGGGTAAGGTGGGTG------TGTGCTTCTCG---------------------GGGGCTTTTGGTGAGG--------------------------TGGGGCAGAGCAGTGC-------------------------CCCAGCTGTCCCTGGGAAGGCAGCAGTGCCCATGTCAGTGGTGTTCTGACGAAGATTTTAAAAACAATAGATTATGTAATTTTATGCTTTTTGAAAATAGCTAA---ATCTTTCTGGCTAGATTGTCAGTAATAATAGTCTCC--AGTATGCATGGAGATAGCCAGATCTTGGAGCATCTCTGGCCCCAGCTGGATAAACCAGGTGTTTTTCTACTCGCTCTGGTTTCATGAGTCTCTGTCTTTGCCTGTTGGTTGTCTCCTGCAACTGCTGACATCATGCCTTCTTGTGGAAGCCACTTGCTTCCTTGATAATTGAGGGTTGGAAAATTGGTTAATTAAGTTTGAGGGAGAGAGGAGGTAATGCTTATTCCCATGTGTGAGCACGGT--TTGCCCATGTTGGGAGGCAAGGCCAGGGCGCCAAGGGCACAGGCTGTGGCCA a score=4776 s hg19.chr6_ssto_hap7 1019045 145 + 4928567 CAGAGTGGAATGATAG-CTGATGACATCATTTTAAAAGTCACAGTACTACAGAGATGTTTGGACACTCATCAGAGGCAGACCTGCTGTGGGAAAGTCAAGGCCTTGGTGCGGAAACCTAAGATTCTGCAAACTGGAACAGGGTTAT s canFam2.chr21 31984390 146 + 54024781 CATAATTGAATGGCGGGCTAGAGACTTAATTATGAGAATAGTTGGACTCCAGGGATGTTGGACCTTTCATCTAAAGCAGGCCTGTTATGTGTAGATCAGGGTCCTGGTAGAAAAACATGGAATTTTGAAAACTAGGACAGAGATAT a score=27078 s hg19.chr6_ssto_hap7 1024861 693 + 4928567 tgtctcaaattttaatcattactttaaaaagagaagtttaaagcattaaagaattataatcagatgaaagcagctttggatttataaaattctgaaacaata----attttaattttgcttttaacatatatgcaaattctttgatact--ctccactttgcagaggtgcaggttcattccctccctgtgagtgtgg-cctggacttaatgattcacttctatctgatggag-----tgac-tgttggtgta---------------gaacaaaaaacttaccgtagcttctacct-----ttgctctctct--------------------------------------gtctctgggatcatgaactctgggggaagccagctgctgtgtcataagcagacctgtggaaaggtccatgtggctagga-ccgaggcctcccgggaccagacaacaaggaactgaggccttttcc-------------------aatagccatgtgagtgagccatttttcatgcaaatccc-cagccc-agttgagccctcagatgatgcagccctggctgacaac---------------tggactgcaaccttgtgagaggccctgagccagaaacactcaggga--aacctctcctggattcctgagcattggaaactgtgggagatgataaatatttgttgctttgagctgttacattttcagtaatttgtaatgtaacagtaaaaaaaaat-acaGC-TTCACAAGAGAGGATGAATAGTTGCACTTTAATTTTCACTTGCTCTAAATT s canFam2.chr12 3982334 802 + 75515492 tatataaacttctcattgttactttccaaagagaaatttgaagcattcaaggaaaataattgggtgaaagaagcatttgatttacaaaattctgaaataatatttagttTTGATTTtggttttaacaggttcacaaattctttgacaacaatcctcctttccagagatggatcttaatgtcctcctcctgagcatggacttgcactgaatgattcacttctaactgatagaaaaggctgatgtgatggtgtgtgacccaggacctaggaacataaaacacattgcagcttctacctggctttttctctctctttttgtctgtctgtctctctgtttctgtatctgtctctgtctctgg--ttacttgcactgggggaaga-agctacctagttattagctacctaatggaaaagtccacacagctaggaactgaggccccttgggaccatctgggaaggaaatgaggcctcttcctcatttcctcatttccctcaacagccatgtgagggagccttatgtcctaggaatccctcagccccagtcaagccatcagatgatgcagtcctgtctgacaacccagtcctgtctgacttgactgcaacccagagagaggccctgagacagaagcactcaggtataagcctctcctggattcctgaccctgggaaactgtgggacacaatatatatttgttgttctgagctgctatgctgtggataatttgttaggcaccagtacataactattataGAgtccaaagaagagaatgaagtattgcactttaatttcgattggctctaaatt a score=10319 s hg19.chr6_ssto_hap7 1025879 311 + 4928567 aattataaaatattaaacat-gtcatttggttttaagaggtaagaggaatttccatggctaa----ataggatgtattttattatcattcacaattattgctttatttgaacttcaatttccaactgtgtcccaattaaactcaaaagaaagaCCCAAGCCAtgctaggctgattctatcatccccc-ccatgatagacgtgtaacct-tggtcattcacctgaccccagttattcaaccaa-cagtaatgtaagtcctgccttgaagggatttttgcatatataattaaggtcctaaatcaattgactttaagacagg s canFam2.chr12 3983136 306 + 75515492 aactatga--tattaaacatcatctattggttttaagatttaagaagaatatctatgtctaagggaacagaatgcatattattaccattcacaacaatctatttatttggagtttgatttctgacggtaaaccaattaaac--aaaaggaagaagcaggctGTCCtaggcagatgctaagatggcctgccataac-------taacctctggttattcatattcttccagttgttggatcaaacactaatccaggtgctagcgtgaaaggacttt-gcatatgcagtgaaggttc-agatcagctgcatttaaaacagg a score=9544 s hg19.chr6_ssto_hap7 1026190 358 + 4928567 gattatccctggtcgggctgtcctcatctggggagcccctgaaaggactgggttcttcctgatcagagagattcacagtgtgagagggattcagtgtgagggggttcctccaatgtggattctaaaaatgaaggggctgtgtggcaaagaatgctggtgggcaccaggaattgagagcagcctctctctaccttgacagtaggcaaggaacaggaacct-tagtcctacaacgggcagaaactgaattctgtcgcc---tctgtataagcctgaaggaggccctcaaaat------gaaaacacagttttgggaaaccctaaacagagaaccctcca--atcatgctcagatttctgac-taaggaactgt s canFam2.chr12 3983701 350 + 75515492 gattatcccaagtagtcctgacctaatcaggtgagcccttaatagcacagggtgcttcctgagtgaagggactggaagagtgagcaggattcattgtgagtgga-------------ggctttatgatggaaggggctcc-cggcaagcaatgctggtggccac-aggagctaagaacagcatcccact-----gacagcgtgccaggaagtggagactgccgacctccaactacaagaactggaattctgctaacagatctgtacaagcttgtagggggacctcaagctctagttgcaaacactgtct-gtgacatgctgaggagaagacccctcagcatcactcctggactgctgacctacagaactgt a score=25761 s hg19.chr6_ssto_hap7 1026884 883 + 4928567 ataaatgggtgttgtttaaagcca--atgtttgtggt-aatttgttatgcagtcatataaaagtcatacaCAGACTCAACAGACAC----------------ATGGAATGAATTTATAAATTGATAAGCACACTACATGAGTAAAATAAAATATTTCCTTTTTCCAGTATTTTTCATTTTATAATATTCCA-TGATGCTATTAAATTTTTATACAATCATATTTCattcaactagtcaacaaaaattaatttagtgcctatgctgaaccaggtTTGCCCTCATATGCTCAAG-----------------------------------------TGCCTGACATTCTAGAAGCTTCACAAgagcgaagtggagccactggagtgttttaggtgaagaaacgacacactttgactcacagtagcaggaccactg-------tggAGAGAACA--CTCAGGTGGCAGGTAATGGAACAGTGCTAGAGCCACTATTCAGGAGTGACAGAGTGGTGGGGACTAAGGGAAGAGGAGGGCCTGAGGGATGAGAGGGACGGAGGGAAGGGCTGGAGAAGCAGGAGGTGAGGAGAAGGAGCAGAGGGACAGAATTTGAAAGCAGCAGAATTCTTA-GCTTTAAACACATTGTTTTATAAATTTGTAATACATCCATCTACAGAGCCTAGCAGGGTGTTCCTTGCATTTGGCCTTTAACACCGTATGTGGGACTGCCTAAAAATTAATTGCTTTTTCTGCTTTTTTTCAGGTTTAAAAAAATACTAAGTGTTCCAATAAAACATGCACACCA-----CTTAGGATGCGGATACTTCCTAAAAACAGGAAGTGCATTAGCACTGGTGAGGGGCATTGTGACTGCGTTGAACACTTGCAACTTTGAGGTGAATGAATGTATTGGCTC-CTGGTTGCAATATAC------AATCACACGTTGTGCTACTTTGTATTGTC s canFam2.chr12 3984057 938 + 75515492 acacatgggtgtggttgtaagtcactatgtttgtggttaatttgttatgcagcaatagaaaaccaccacaTAGCCTCAATGCACATCACATTTTCCCAGTGGAATGAATGAATGTATGAATCGTCGTGCACACTAGTTGCATGAAATAAAAT--CTCATTTTTCATGTATTTTCCATTTTGTGATTTTTAAGTGATGGGATTAAAATCTAATA--GTCATATTTCattcattcattcaacaacaattaatttagtgcctactctgcaccaagaatggctttctacactaggggtacagctttcctcaaagtagcccaaagcacctgtgcttcatgctttacattctagaggCTTCCTAAAagtgagatggagcccctggagcattttcagtgatgaaatgacacattctgactcacattagcaggatcactgaccccagtggagagagtggccctgggtggcaggtgttggggtggcagcagggtg--caatcaggag----AGCG-GGTGGAGACTAAGGGGATGAGAAGGCATGAGGGCTGAGAGAGATGGAGAGAAGGGCTGCAGATGCAGGTG--GAGGGAGAGAAGCAGTGGTAAAGAATTCTAAAGTAGTGGAATTTGAATACATTGAATACATTGTTATATCAATTTTTTATTTAATCTCTATTAGGTCTTAGCAAGATATTGTTTGCATCTAATATTTACTGCACTCTGTGGA-----CTGAATACCTGTGGCCTCCT---TATGTTATCAGGGTTAAGAAGTAACCTAG-ATGCCACTAATACCCAAATAAAATCGTCCTTAGG-TGC---TCATTCATACACACAGGCAACAC-TGAATGCTGATGACGGGCATTTGGACTGCCCTGAATACTTGCAACTATGAGGTG-ATTAATGGTTGGACACTCTGATTGAAATGTACtatattaatgatactttctctttttttgtatcctt a score=4290 s hg19.chr6_ssto_hap7 1027767 197 + 4928567 AGGAGATGTCCTGGACTCCCACAGAAACTCAGGGCTATGGAATGAAGGTAATTTTAGAATACAACAAGAGTCACAGATACATAGTCTGGGAAAGCAAAACTTAGGAGCTCTGAGAGTTGTACAACTGTAATGCATTTAGACATATTTATATATCAAGGGGCCAAAGTAACATTTTTTACACATAAGATTCCTGATCg s canFam2.chr12 3985528 177 + 75515492 AGGCTATGTCTGGAATTC--ACAGA----CGGAGCTATGGAACAGAGGTCATTTTAAAGCACAAAAA----CTTAAAGTCTTGGCTTGGGAAAGTGAAAATGAC-AGCTTTGGTTATTTCAAAGCTGT-------TTAGGCAAATTTATACAGAAAGGA--TAAAATCACTACTTTGACACATGCGAGTCCCGATCT a score=1797 s hg19.chr6_ssto_hap7 1028265 289 + 4928567 TTCAGGGGTTACCAAGATTCTACTACTCACTGCAGCTAATAAAAAAAAAAGAAAGAAAGAAACTGGTCTCTGT-------CCTATTTCATATGCTCAGGTACAACTTTTCCAGAGAAGAAGAGGAGGGGGGCGGggaggagcaggaggaggaggaaagaaggaggagaaggagaaggagaaggagaagaagaagaagaagaagaaAC--TGTCTCTACACCTTCATTCTCAGGACAAGTTCATTGTCTGGCACCAAGCTCCTTGGG-GTGAATTTTCTTCCAAAAGAGTCCGGGGAGTC s canFam2.chr12 3985705 197 + 75515492 CTCAGGGGTTGTCAAGATTATGGTT--------------------AAGAAACAAGAAGAAAACTGGCCTCTGTGAAAATCTCTAGCTAGTGC-CCCAAGCACACCTGCCTCAGGTAC---------------------------------------------------------------------------------AGAAGACACCTTGTTCCTTCACCAATTGTCCCACAGTCAGCTCTCTCTCTGGCATCAAATTCCCTGAGAGTAAGTTTCCTTCTCAGACAGTCCAGGGGGAC a score=116710 s hg19.chr6_ssto_hap7 1028554 3420 + 4928567 CAGGTA------------------TGGAATGGGAG--GCAGAAAGTTCAATCAAGGGACT-------------GGGATTTCGGAATGAATAATGAAGGGAGATGGACTGGGTCCATGCCGAAGGTTTCTCCCTGGTTTCTC-----AGCCCCCGGGCGAAGACTCAGGGAGACATTGAGACACA---CCCTGCACAggagggggagggggagggggagggCAAAGTCCCAGGGCCCCAGGA-----GTGGCTCTCAAGGGCTCAGGCCCCGAGGCGGTGTCTGGGGTTGGGAGGCTCAGTATTGAGAATTCCCCATCTCCCCAGAGTTTCTCTTTC---TCTCCCAACCCGTGTCAGGTCCTTCTTCCTGGTTACTCATAACGCGGCCCCATTTCTCACTCCCATTGGGCGTCGGGTTTCTAGAGAAGCCAATCAGTGTCGCCGCAGTTCCCAGGTTCTAAAGTCCCA-----------CGCACCCC------GCGG-GACTCATATTTTTCCCAGA-CGCGGAGGTTGGGGTCATGGCGCCCCGAAGCCTCCTCCTGCTGCTCTCAGGGGCCCTGGCCCTGACCGATACTTGGGCAGGTGAGTGCGGGGTCCAGAGAGAAACGGCCTCTGTGGGGAGGAGTGAGGGGCCCGCCCGGTGGGGGCGCAGGACTCAGGGA-------------------------------------------------------------GCCGCGCCC---------------------------------GGAGGAGGGTCTGGCGGG-TCTCAGCCCCTCCTCGCCCCC--AGGCTCCCACTCCTTGAGGTATTTCAGCACCGCTGTGTCGCGGCCCGGCCGCGGGGAGCCCCGCTACATCGCCGTGGAGTACGTAGACGACACGCAATTCCTGCGGTTCGACAGCGACGCCGCGATTCCGAGGATGGAGCCGCGGGAGCCGTGGGTGGAGCAAGAGGGGCCGCAGTATTGGGAGTGGACCACAGGGTACGCCAAGGCCAACGCACAGACTGACCGAGTGGCCCTGAGGAACCTGCTCCGCCGCTACAACCAGAGCGAGGCTGGTGAGTGACCCCGGCCGGGGGCGCAGGTCACGACCACCCGCCATCCGCCACGGACCGCCCGGG-TCCCTCAGAGTCTCCGGATCCGAAATCTACCCCGAGGCAGCGGGACCCGCCCAGACCCTCCACCCGGGA-GAGTCC-CAGGCGCCT--------TTACCCAGGTTCATTTTCAGTT--------TAGGCCAAA----------ATCCCCGCGGGTTGGGCGG--GGAGGGGGCGGGGCTAGCTGGGCGGGGCTGACTG---CGGGGACCGG---------CTAGGGTCTCACACCCTCCAGGGAATGAATGGCTGCGACATGGGGCCCGACGGACGCCTCCTCCGCGGGTATCACCAGCACGCGTACGACGGCAAGGATTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACCGTGGCTCAGATCACCCAGCGCTTCTATGAGGCAGAGGAATATGCAGAGGAGTTCAGGACCTACCTGGAGGGCGAGTGCCTGGAGTTGCTCCGCAGATACTTGGAGAATGGGAAGGAGACGCTACAGCGCGCAGGTACCAGGGGCCATGGGCGC--------CTTCCCTATCTCCTG---TAGATCTCTTGGGATGGCCTCGCACAAGGTTGGGAGGAAAGTGGGCCCAATGCTAGGATATC------GCCCTCCCTCT--GGTCCTGAGTAGGAAGAATCTTCCTGGCTTTCGAGATCCGGTACCAGAGAGTGACTGT----GAGAGTCCGCCCTGCTCTCTGGGACAATTAAGGGATGAA------ATGGAGGGAAGACAG-----TCCCTG----------------GTCCCCTTTGAGCCCTCCAACAGCCTTGGGCCCCG-----TGACTTT-TCTCTCAAGTTTTGTTCTCTGCCTCACACTCAATGTGTTTGGGGCTCTGATTCCAGTCCCTCGG-------------CCTCCACTTAGGTCAGGGCCAGAAGTCCCTGCT-CCCCGCTCAGAGACTCGAACTTTCC-------------------------------------AAGGAATAGGAGATTTTCCCAGGTGTCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCCCCACCCCAGGTGTCCTGTCCAGTCTCAGGTTGGTCACATGGGTGCTGCTGGGGTTTCCCATGAGG---AGTGCAAAGTGCCTGAATTTTCTGACTCTTCTC---AGATCCTCCAAAGGCACACGTTGCCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACGCTGACCTGGCAGCGGGATGGGGAGGAACAGACCCAGGACACAGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCCGCTGTGGTGGTGCCTTCTGGAGAGGAACAGAGATACACATGCCATGTGCAGCACGAGGGGCTGCCCCAGCCCCTCATCCTGAGATGGGGTAAGGAGGGAGATGGGTAAAGAGGGGAATGAGGGGTCATGTCTTTTCTCAGGGAAAGCAGGAGCCCTTCTGGAGCTCTTCAGCAGGGTCAGGGCTGAGGCCTGGAGATCAGGGCCCCTCACCTTCCCTTCCTTTCCCAGAGCAGTCTCCCCAGCCCACCATCCCCATCGTGGGCATCGTTGCTGGCCTTGTTGTCCTTGGAGCTGTGGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAGAGCTCAGGTAGGAAG--GGGTGAGGAGTGGAGTCTGAGTTTTCTTGTCCCACTGGGGGTTGCAAGCCCCAAGTAGAAGTGTGCCCTGCCTCATTACTGGGAAGCACCATCCACACTCATGGGTCTACCCAGCCTGGGCCCTGTGTGCCAGCACCTACTCATTTGTAAGGCTCCTGTGAAAATGAAGGACAGATTCTTCACTTCGATGATTATGGTGGTGATGGGACCTGATCCCAGCAGTCACAAATCACAGGGGAAGGTCCCTGCTGATGACAGACCT-CAGGAGGGCAGTTGGTCCAG-GACCCACATCTGCTTTCTTCA-----TATTTCTTGATCCTGCCCTGGATCTACAGTTACACTTTTCTGGAAACTT-CTCTGGGATCAAAGACTAGGGGTTTGCTCTAGGACCTTATGGCCCTGCCTCCTTTCTGGCCTCTCACAGGACATTTTCTTCC--CATAGATAGAAACAGAGGGAGCTACTCTCAGGCTGCAGGTAAG-ATGAAGGAGGCTGATCCCTGAGATTGTTGGGATATTGTGGTCAGGAGCCTATGAGGGAGCTCACCCACCCCACAGTTCCTCTAGCCACA---TCTGTGGGCTCTGACCAGGTCCTGTTTTTGTTCTACCCCAATCACTGACAGTGCCCAGGGCTCTGGGGTGTCTCTCACAGCTAATAAAGGTGACACTCCAGGGCAGGGGCCCTGATGTGAGTGGGGTGTTGGGG----GGGGAACAGAGGGGACTCAGCTGTGCTATTGGGTTTCTTTGACTTGGATGTCTTGAGCATGAAATGGGCTATTTAGAGTGTTACCTCTCACTGTGACTGA--------TAC---GAATTTGTTCATGAATATTTTCTCTATAGTGTGAGA-CAGCTTCCTTGTGTGGGACTGA--GAAGCAAGATAT s canFam2.chr12 3986234 3587 + 75515492 CAAGTAAGTAAGCAAGTCAGTCGGTGGAGGGGGTGTGGTGAGGGGTTCAAGGCAGAGACTCAAGCTCAGCAAGGGGTCTCCGGGAAGGAAGAC--AGGAAAAATGGCTGAGCCCA-GTCTGGTGTCTTCACTTGGTTTCTTCAGAAAGACCCTGGTCCAGGAGTCAGGGGGAAAGTGTAACAAAGAGCGCTGCAC----GCAAGATGAAAAGTGTCAGGTCA---CTCTATGGTCCCGGGGAGGGCGAGGCTCTCAGGCTCTCAGGCCCCAGGGCGG-GTCCGGGGCGGGGACGCTCAG-GCTGGGGAGTCCCCACCTCCCCGG-GTTTCACTTCTCCGTCTCCCAACCTGGCTCAGGGCCCCCTGCCTGGAGACTCGTGACGCAGCCCCAGCGCGCACTCCCATTGGGTGCAGCGTTTCTGGAGGAGCCAATCAGCGGCACCG--GGTCCCGGGCTCGAAAGCCTCCGCCGCCGCCTCCGCCCCCCAGTCCGGCGGCGACGGCCAGTGTCCCCGGAGCCCGGAGATGGAGGTGGTGATGCCGCGAGCCCTCCTCGTGCTGCTGTCGGCGGCCCTGGCCGTGACCCTGACCCGGGCGGGTGAGTGCGGGC--------------------------GGGAGCGAGGGGACCGGCGGGCGGGGACGCGGGACCCCGGGAAGCCGCCTCTccgccgcccccggccccccgcggcctgggctccccggtccctcccgcctccgccccgccccgggcatctcccctgggccccgggccccgcggcgggagggggtcgggcggggTCTCAGCCC----TCGGCTCCGCAGGCTCCCACTCCCTGAGGTTTTTCCACACCGCCGTGTCCCGGCCCGGCCGCGGGGACCCCCTCTACATCTCTGTGGGCTACGTGGACGACACGCAGTTCCTGCGGTTCAACAGCGACGCGGCGAGTCCGAAGGTGGAGCCGCGGGCGCGGTGGATGGAGCAGGAGGGGCCGGAGTTTTGGGAGGAGCAGACGGAGATCGCCAAGGTGCACGCCCAGACCTCCCGATCCAACCTGCAGACGGCCCTCGGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCCGGGCCGGG--TCCAGTTCACGA--GTCCATGAACCCCCTTGCACAGCCTGGGGTCTCCCCGAGTTCCCGGGTCGGAGATTGACCCCCGGGCCAGGAGACC-GTCCTGGCCCCCTACGCGGGACGAGCCTGCAGGGACTTGCGGACAGTTTCCGAGGTCTCTGACCACTCGCCGGCCGTAGGTCCAATGCCAGGGGAGTCTAGGTGGACCGGGCTGACGGCGGGGACCGGGCTACCGGGGCGGGACTGACTGAGACGGGGGCGGGGGGGGTTGCCCAGGGTCTCACACCTTCCAGTGGACTTCGGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGTATGAGCAGTTCGCGTACGACGGCGCCGATTACCTGGCCCTGGACGAGGACCTGCGCTCCTGGACCGCGGCGGACGCGGCGGCGCAGATCACCCGGCGCAAGTGGGAGGCGGCGGGCGCGGCCCAGTACTACCGGGTATACCTGCAGGGGGAGTGCGTGCAGTCGCTCCTTAAGTACCTGGAGAGAGGGAAAGAGACCCTGCAGCGCACAGGTCTGTGGGGCAGCTGGGACTCCGGGATCTCCCCTCCCGCTGGGGCTGTACCTCCTGCTAT--CCCTACAAAA-------AGGAAAATGGAATTGACACCAGAATTCCTCCCCTGCCCCACTTCTTGGATCCTGAAAGTGAAGACT-TTCTTGGTTTTCAG--TTCTGTACTAAAGAGAGACTCGCTCAGAAAACCCATCCTTCTCTCTGG-ACATTTAAGGGATCCAGTCTTTATGGAGAGG-GATAGAGATATCTCTGAAATAATTTAATAGCAGATTTCTTTGACCCTGGCATTCACCTTGGGCACCACTGACTGACTTCCTCCCTCAGGCCTTGCTCCCTGTCCCACACCCCACTTAATTGGAGGTCTGCCTCCAGGTTTTAAGAGGCACTGGACTTCCTCTACCTAGGTCAGGACCAGAAGTCTCTGTTGTCCCACTCAGAGACCTGGAACTTCCTACCTTAGGCTATCTTATCCTGATTCTAGATCTTCCAAAGGGATAGGAAGGTATCCCAGATCCTGGAGTTCAGGCTGGTGTCTGTATTTTGCACTCCCTCTCCC---CCATTTGTCCTCTTCATTCTCAGCATGGTCACAACAGTGCTGCTTAGGTGGCCCACCCGGTATAATGCAAATT-TGTAAATTTTCTGACCCTTCTCCTTAGATCCTCCAAAAATCTACCTGACCCGCCACCCCATCTCTGACCATGAGGTCACCCTGAGGTGCTGGGCGCTGGGCTTCTACCCTGCGGAGATCACCCTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACAGAGGTTGTGGACACCAGGCCTGCAGGAGATGGGACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCCTCTGGACAGGAGCAGAGATACACGTGCCACGTGCAGCATGAGGGGCTGGCGGAGCCTGTCACGCGGAGATGGGGTAAGGAGGG------------------CCTCGGGGTAGAGCTTCTACTCAGGGCAAGT-GGAGCTCTTCTGGAGAATTTCAGCAGAGTCAGGTCTCAAGTCAGAGGCT---GGACCCTCATCCTCCCTCCCCTTTCCAGAGCCTTCCCCTCTGTCCACCATTGTCATCGTCAGCATTGCTGCT---CTGGTTCTCCT------CGTGGTCGCTGGG---GTGATTGGAGCTGTGATCTGGAGGAAGCAGCGCTCGGGTAGGGAACCGACTGA-----ATACTCTGTGTTTTCCTGTCCTGTTGGGGGTT-----TCCTAGGGAGCACGCTGTCCTGCCTTGTTAACGGGAGGTGCCGTCCATACACGGTTACTCTCCCACACTGGA-GCTGTGTACTCACACTCACTGTGCAGCAA-ACACTTGGGAAAATGAAGGCCAGAGT-TTCGCCTTGGTGATTCTGGTGACG--GGGACTGATTCCCAGCCGTCACAGGACAGAGCGGAAGGCCCCTGCTGAGGACAGACCTCCAGCAAGTCAGGTGGTCCAGTGACCC-------CTCACCTCATGGCTTGTCTCCTGACCCTGACCTGGGCGGTCAGTCAGAA--TTCTGCAGACTCACTCTGCA--CCAGGACTGGGAGCTTCCTCGAGGATCTCCTGGCCCAGCCCTGTGCCCGGCCTCTCACATGATGTTTTCTTCCCACACAGGAGGAAAAGGACCAGGCTACTCTCATGCTGCACGTGAGTATGCAGGGAG-TGATCCCTGAGACC-CCGGGGGAGTGTAGACAGGACCCCATG-GGGAGCTCACCCCCACAGCTGCTCCTTTAGTCTCACCTCCTGTGAGCTCTGACCACGTCCTG--TTTATTCTCCTCTAGGTGATGACAGTGCCCAGGGCTCTGATGTGTCTCTGACAGCTCCTAGAGGTGAGACCC-----CAGAGACCCTGAAGTGG--GGAGGGTTGGGGCACTGGGGACCAGA-------------------------------------------TGAGCACGAGG-GGGCTGTTGAGAATGTCAGCACTTA-TGTGACCGACCTCACAGTACCGACAATTTGTACTTG-ATTTTTTCTC-ACAGTGTGAGACCAGCTGCCCTGTG-GGGACTGAGCGATGCAAGATGT a score=36989 s hg19.chr6_ssto_hap7 1032064 615 + 4928567 ATATGTTTTTATAGCATGCACGTAAgtgtgtgtgtgtgtgtgtgtgAAGAGAAAGAGTGAATAGAGAGATTAAGATTCTTTTAATGGTGAAAAGATATACATATATTTGGAATTA--GCCAGCTTGACTCAGTTTAGGTGATCCCAATTTTGGTGGCAACAACCAAAGCATCGTAGTCAGGAGCCAGTCGAACATATGCCTTCCTCTCTCCATCAGACTGAATCAGAGTGTTGACTTTGGCCACATCAATGTCACA-AGCTTCTTCACAGCCTGTTTGATCTGGTGCTTGTTGGCTTTAACATCCACAGTGAACACAAGTAGGCTGTTGTTTTCTATCTTCTTCACAGCCTACTCAGTGGTCAGCGGACTCTTGATGATAACATGGTGGTCAAGCTTATTTCTCCTGGGGGTGCTCTTCCAAGGATATTTGGGCTGCCTCCGGAGTCACAGTGTCTTGGGCCGCCGGAAGGTGGGTGACATGTGGATCTTGTTTTTTTTGTGGCTGTGGACATCTTTCAACACTGCCTTCTTGGCCTTGCAAAGCCTTCGCTTTGGCTTCGGCTTTAGGAGGGGCAGGAGCTTCCTTCTTCGTTCTTGGCACCATCTTATGAAAAGGG s canFam2.chr2 5904811 604 - 88410189 atatattgttcaagactgcatccaactgtgagaaaac-----tataaagaaaaaaggtaaaggaataattT----TTTTTTTTATGGTGAAAAAATTTA----TATTTAGATTTATAGCCGGCTGGACTCAGTTTAGATGATCCCAATTTTGTTGGCAACATCCAAAGCATCATAGTCAGGAGCCAGTCGAACATATGCTTTCTTCTCTCCATCAGGCCTGATCAAGGTGTTGACCTTGGCCACATCAATGTCATAGAGCTTCTTCACAGCCTGTTTGATCTGGTGCTTATTGGCCTTGACATCCACAATGAACACAAGTGTGTTGTTGTCTTCTATTTTCTTCATGGCTGACTCAGTAGTTAAGGGGAACTTGATGATGGCATAGTGATCAAGCTTGTTTCTCCTGGGGGCGCTCTTTCGAGGATATTTCGGCTGCCTTCGGAGACGCAGGGTCTTGGGTGGTCGGAATGTAGGTGACGTGCGGATCTTCTTTTTTTTGTGACTGTGCACGCCTTTCAGCACCGCTTTCTTAGCTTT-CAAAGCCTTTGCTTTGGCTTCGGCTTTGGGAGGGGCAGGGGCTTCCTTCTTCGCCTTCGGCGCCATCTTCGTGAAAGGG a score=1283 s hg19.chr6_ssto_hap7 1032740 141 + 4928567 ccactaaatacttcatcacacacctcctaagaataagaaccaacattatcacaccaaagaaaataaataattcc--ataatattatttaaagtccttttatgttcaaatatctccacttctttcagtac---atttttgtacctat s canFam2.chr37 24398678 116 - 33915115 CTCCTTAATCTTTCAT--------TTCTaaaaaaaaaaa-------------aaaaaaaaaaaaaaaaaaCCCCTAATAACATCAttta---------tacattgatagatttatggttattgttgttcaggatttttgaatctat a score=32888 s hg19.chr6_ssto_hap7 1047323 1316 + 4928567 GCTGTGCACTGCCCTGGTGGTCTCCTGTCCCAACCGGGCGTTGATCCGGGCCTTGCAGGCTCACGTGCTCTGGAGAAAATAGAGAAACCAATAAATGCTCCCCTGGGTGCAGAGTGCTGCTTTTTACTCCCTGAGGATTTCTCCCTCCTCAGTCACTCCAAAATCAGATTCACCCTTTCTCTGAGGGAAGATGATGCTCCCACATTTTTCTCCCTCCTATGGCACTTTTCCCAGCCCCTGCCAGTCCCCTCCCATGACTTCATGAAGATCAGCA-CTTGCCCTGTGCCCACTATGCACTCTGTAGGGAC-TGAAAGGGCCGCAGGACTAAATGACAAGACTCCAGA--AGAAACTCAGTGCCCTCCCCTCCTCTCAAGCCTGGCCAGCTCGGACACAGTGGGAGGCCTCCCCAGAGAGAGGCCCTGGCTCCACGTACTTCCAGGCCTGGGCTGGGTCACACACAAGGCCTTTCTCTCCCTCTTTCCCCAGGCCCTCCTTTCCTGCAGAAGCACCTGCACACCAGGGCAGGCCCTGCCCACTGTGGGTTCCGCCCTCCACCTACAGCT-CAGTGTTCCTCCCCTTCCAGTCCTGAGCAGGCAGCTCCTACCTGGAGAGCCCACCAGGAAGCCCAGCAGGCCTGTCAGGCCCAGGATGGAAACACGTGGCTGCCATGGGGTCTGCACCTGACCTGACCCTGGAGACCCCCTTGCTCA-AGAAGGCTCTGCTT-CCCTTGAC----------ACCCAGGTCCATGACCTGCACTTGGGATGCCCTGCTCCTGCCTGGTCCACTCATCCCTGGAAATCCAGCTCCACCCCAGGGCTGCTGCTTGG-TGAGGCTGC-AAGGCCTTCCTGTCTGGTTCCTAGCAGGGATTCCACCCAGGCCACTGCCCTCACACCCACAGAGGATCT-------TCTTCTTCTCCCTATGGAATAAGGGATTTCTTGAGACCCCTCAGCCTGAGGCTGCCTCCGCCCACTCTGCACCTGGGGATTGCCACAGCCACAGCC-----ACCATCTCCCACATGGA-CCCTTCTAGA-GAGAGAGTTTCAAAT--TTGAATTCCTGTTCCATTCAATATGCTTTACAGCATCGGTATTGGAGGAAATCCTATTAAGAATATCCAGCTGAAATTATGAACATCTTTATTGGACATCAACATTGAAAGCAGGAATTTTGAGAAATTAGCATGTGATTTTCACAACCTTTTTCTGGCCAATGCCCCAGTGACCTACAAGGAAACCTTTACTGCCCACAGGGAACCAGAACTGACAATTCCTCTACGGGAGATGCTGCAGGTGAGAGCAGGAGCAAC--CAGACCTGCACTGCCCCT s canFam2.chr12 71543888 1291 - 75515492 GCTGGTTGCTGCCATCATGGCTTGTTGGTGCTACCTGGTGTTGATCCAGGTCTTGAAGGCTACCAAGATTTTGGGGAAA-AGAGAAACCCATAGAG--CCCAATTTGTGCAAAATATTGTTTTGCACTTGCTCAGAACTTCT------TCAGTTACTCCAAATTCAG-CTCTGACTTTCTCTGAAGGAGGATAA-ACCCTTGCTGTTATCTCTCTCTCA---CCCCTTTACCAGCCCTTGCTGCCCTCCCCACTGTGATGCCTCAGCATCACTAGCTGGCCCTGCCTCCACCATCTACTGGACAGGAGCAGGAAAGGGTCCCAGGACCAAG-GACAACACCCTGGAGCAGAAACTCAATGCCTTCT--TGGTCCCAA--CTGTCCA---CTGACAGAGAACATGGCC-CCTGAGAGACATGTCCCTGTGGCCTGTTCCTCCAGGCCAGACAGTGGTTACAAACACTGCTTCT-TCTCTATCTGTC---AGGCTCTCATTT---GCATAAACACCTGAGCACAGAGAC-----CTCTCAACCACAAGCACTGACCTC-ACCTGCAGCTTCAGCCTCCTTCCTTCCCTAGCCCTAAGCCAGCAGCTCCTAACTGGAAGGCTCATCAGAGTGCTCAGGTGACC-ACCAGTCACAGTCTAGAAGAAGTGGACTACAGTGGGGTCTGTATTTGACCTGACTCAGGAGCACCCCATGCTCACAGAGGCCTGTCCTTGCCCTCCACCCTCACCCTGACCCAGGCGGCCAGGCTGCACTTGGCCTTCGGTGCTCCTTCTTGGCCCACCTGCACCTGGAATCACAGCTCCTCCCCAAG--TGCAGCTTGGCTGAGGCTGCCAGGGCCTTCTGGCCCCAATCCTAGCAGGGA--CTAACCAGGCAATG-----------CAAGGAGAACCTGTTGCAGTCTTCTTCTAAATGAGGTAGAGGGGGTT-CTTGAGACCCC-AAGCCTGAGGCTATCTGTCCATCTTCTGAACCCTGAGACTGCCATTGCCACCACCTCTCTCCCACCTCCCACATGGAACCCTCCCAGACAAGAGCCCTCCCTCTGGTTGAATTCCTGATATATTTCACGCACTAAGCTAGCTCAGGATCTGAAGAAATCCTATTAAAATTCGTTTTCTGAAAT------AATTTGTTTTGGACATCACAATTTAAAGCAGGAATTT-GAGAAATTGACACATGACTTTTGTATTCTTTCTCCAGTAAATGCCTCAATGATATATGAGGCAATCATTTCTACCC-TAAGGAATCAAAACTGGTGTTCCCTCTGGGAGGGCCACCCCAGAGAACAACAGGAACATCTGCAGACCTGCATGGCTCTT a score=9563 s hg19.chr6_ssto_hap7 1048671 354 + 4928567 GACTGTGTTCCTGGGGGCTAGACAAGGTAACACTTGGACATATGATGAAAACAGGGACCACAGCTGCCCTGACAAGGAGCTGGTTCCTGCTTCCCAAATGGCCCAGGGATGTCTGCTTATAT------------------ACTCCTCTATAACATCTGCACAGAAACTCAGGGAGGCA--GGGCCATGTGGTGGGAACC----------------TCCAGTGATGCAGAGGACATGATACCCCCAAGACAGCTCCTGGAGGAGGCCCATGGGGAGCTGCAAAGTGGAC-AGAGATGGCTGTGTGCACTCAGGAC-CCTCCCTG--TTACAAGGGGACCT---CAAAGGGGCTGCACAGGCAGGCCTC-------------------CCAGTCTGGGCTTCGTGGGTCTTTTTCTTG s canFam2.chr12 71545934 413 - 75515492 GACTGTGCCCTGAGGGCCTGGACAGGACACATCAGGGAGGCAGGATAAAAGCAGTGGCCACAGCAGCCCTGAGAATGGACTGACCCTCTCTACCCAAATGATCAAGGGTTATCTGCTCACACCCCCAGAGTCTCCCTGAGACTCTTGCATATGATCCACAAGAAAACTCCAGGAAGCATGGGGGCATATGATGGGAACCAGGAAAGAGCACAGGTGGGAGTGACCCAGTGGA---ACAACTCGGGAGACAGGTCCTGGAGGAGCCATTCGAGGGGCTACAAAGTGGACCAAAGGTGACCATCTATGCTCAGGATGCATCTATGCCTTGTGAGTGGAACTTCCCAAGGGGACGTCACAGGCAGGACTCTGGCATGCTCTCCTGGCTGCCACATGGGGCCTTGTGAGTCCTtttcttt a score=36597 s hg19.chr6_ssto_hap7 1049025 1451 + 4928567 GTG----------------TCCTCCTGATGGCTGGAGAAACAGGAGAGAGGGATGCAGAGAGGAAGAGACTAGGGGCACCGCCTCTCCTC-GGATTCCTCTCCAGTTTCTAGCTCCTCC-CCAGATCACAGCCGCCTTTACTATTTACTCC-CACTGAAGCCATGATCATCCAGGCCCTCAGCAATCAGCACGTGATTCTCAACTCACCCCACCTGGACGCA-----CCGTGGTGAGCCCAAGAAACAAGAGAGACCAGGATGGGGACAGAGCAGGT-GCCACGGCCCTCCCTGCTGCCCACTCCTCACCTGCAGCAGGAGAAGGCCACCGCTGGACATTTGAGGGCCGTGGCCCAGCCCTGGCTTGGGCAGGACTTAGGGGTGTAGATGGAGATGTGGCTCCCATTCCCCTCCCAAATACCCCAATGTCCATCCCCTGTTCCAGGACCTTGTTACCTACATGTCT-ATCTGTGCAG---GAGCTATGAGGGGACCCTGCTGCCCAGAGAGGAGTCCTTCCATCTCCAGCCACTGCCCCGTTTTCTCACCTGGACT----CTGCAGCTGATGTTGTCTTCTTCTTGCACCAAAGGACACAGAGAATACTACTACTACTACTAATACTAATAATAATGACAGTAGCAATAGCAGCATACAGAATGGCTG-CCATTGACTCTGAAGCACCAGGGCCTTCTCTAAAAAAAGGGCCTTGTGACACACTGAGC-ACGCAAAGCCACAG-CCGTCCCTGCTATCCCCACCCTGG--CCTGAC-CTCCCTAGGTCGAAACCCTT---GAGAGTTGCCCCAGGCTCACCAGAGGGCACAGGGTGAGTGCTGTGATTCCCTCTGTGTCCCATGTAGCAGGTGAACCTCTGCTCCTCTCCTCGGGGAATCCTGGTGGCCATGCAGGTCTGGTAGGTCCCATTCCCATTGGGCAGGACACCCGTAGACTGCTGGGCATCCTGGCTCAAAGATGCCTCATCCTGATGCCAGGTCAGAGAGATATTCCAGGGATAGAAGATG-GAGACCAGCACATCATGGTGACATTGCCTTCTAAGGCCCCACTGTGCATCTCATTCACTGTGGGGGTCATTGGAGACAAAAGGGCAGAGCCAGTGAGGCATGTGGCCAAGCCTTTCTCCCCTCTAAGGGAGATGCAGGGAACAGGACTGGTCCTCTCTATTGTTCTGACTCTCGCTGAAACCCACACTGACCCCAGACCTTCTGCAAATCGGTCCTT--ACCTGGGGTCCAATTCCCCTAGGCTTGCTGGAAGATGGGCCTCAGGACTGTGGCCTCACACTCTGGGACTCCGGCTTTGATGCTGAGGAGAGGGTTGTCAGGGGTGGGCTCCTGGGTCGTGGGG---CTAGGAGGTAGCTCTCCAGGATGGGCAGGCTGGGAGGCAGATGAGGCAGCCCTGGCCTTGAGGCCTTCCTTTCCTGCCTAATGCCCAC---CCCAGGTTCAGGCTTCTATAGGGGGACCCACTACT s canFam2.chr12 71546565 1391 - 75515492 GTGAGTCCTTTTCTTTGATTCCTCATGATGGCCGAAGATATTGGA---ACAGGTGTGGACAGGAAGGAAATAGAATCATTACTTCTGGTCTGGATTCTTGCCCAGTGTTAAACTTCCCCACTAGGTCTTGGAC-CCTTTACTGCTTGTGCCTCTCTGGTCCCACGATCACCTGGGCCCTCCCCAGTCAACACATGGTCCCCA---CACATTACCTCCAGACAGAGAGTCCTGCCGAGCCTGAGAGTAGAGAGAGGTAGGGACAAACTCAGAGCAGGGAGCCCCAG---TCCCTACTGCCCAATCCTCACCCAGAGCAAGGAGAGGCCAC-ACTCACCACTCAAGGGCCCTGG---GGACC---------CAGGGCT-AAGGATGTAGATGCAGATGTGGCTCCCAG-CCCCTCTCAGCT-CTCTGACTTCCAGCTCCTGTTACAGAAGCTTTTCATCCCC---TCTGATCTGTGCAGAGGGAGACATAAAGTG-CCCCACGTCCTAGGA--GAGCCCCTCCAACCCTACCCACTGCCCAGAATTCTTATCTGGGCTTCCACAGCTGCTGGTGGTATCTTGTTCTTGGAGAAAAAAACACGTGCAATG---------------ATGACAGTAAGAAAATCAGCAGGAGCAGCAGCAGGCAGG-TAGCTGTCCATCCACTCCGGGGCACTGGGGCCTTTCCTGGAAAA-GGGCCTTATAGTGACCTGGGCTCCTCAAGGATACAGGCCTGCTCTCCTCTCCCGACCCTGGTTCCTAACTCAACCAGGGTCAGAACCCCCTCCACGGATCACCCCAGGCTCACTTGAGGGCACACAGTGTACAGTGTGGTTCCTTGTGTCTTCCATCTGGCAGGTGAACCTTTGCTCCTCTCCTTGAGA---CTTTATGGCCCCTCCTGTCCAGTAGGTCC--GTCCCATT----------CCCG-ACACTACTGGTAATCTTTGCTCAGGGGTTCC-CATCCTGAAGCCAGGTCAGGGAGGTATTCCTGGGAGAGAAACTGAAAGCCCAGCATGTCAGAGGGATCATGCCTTCCAAGGCCTGGCTGCAGAGCATGTTCACTGTTGGGGGCACTGAGGAAGAAGGCACAGAGCTGGTGAGGTCCATGGCTGAGCCCTGCTCACCTCCACAAAAGA--CAGAGAGAAAGGCTGCTTCTCCCACT--TTCCACCTCTGGCTGAAGCCCTCACTGACCCCAGACCTGCTCCAAGTCTGTTCTGCACCCTGGGACCCAGGTCCTTAGCCCGGGCAGGAGGATGGGC--CAGGAATGGGAT------CTCTTGGATGCATGTGTTACTGCTGACGAGGGGG-CATGGAGGGTGGGCTCTTCGGCTGAGGGGACTCTA-AAGGAAACTCTTTGTGACAGGGAGACTGAA------------------------------CTTCCTCTCTTG-CTGACACCTGCCTTCTCTGGTTGAGTTCTACGTAGGAAAGCCCACTGCT a score=38350 s hg19.chr6_ssto_hap7 1050583 1326 + 4928567 TTTCCTCCCAGAAATTTGTGACATTCATAGCCAAAGTCTGAGCTCTGGAGGACCGGGGCACTGTCCATTACTGAGTCTCCAGGTTG-GGAGAGAGGAAGAGCTTCCCATATGTGTAGAAATGCCTAAAGCCCCTGGTGCTGCTGGCTTCCTGATCTCACAAACCGTA-ATCTCCTGGAGGGAATGCAAGGCTGCCTGCCCCTACCCAGCAGTGATTTCTCCA-------------------TTCCAGTCCAAGTGAGGAACTCGGACCAGGAAGGACCCCTCCCTGGCCCTCTTCCAT-CCCTCCCTGTG---------------------TGGGCTGAGCCCCGCTGAGCACCATTCCTCACCCCTACTCACACCCAAATCCAGTGGGAAGAGACAGGTC-CTGCTCTCTGCCCCCAACTCTCCTGGAAAAGGCCTCTCCCATTACTCTTGCCCACTGCCCACTCTCACCTC-------CTTTCTGGCCCTTGATATGAGCCAGGGTCCTCCTGAGCTCCTGCCCATTCTCTGTCAAGTCTTCAGTCTCTGTGTCCCAGGTCTCAGCTCCCAGGACTGCTTCTGCCCACTGTCCCCGGGGCCCTGCCCTGCCTTTCTGCCTGTCACAGAGCAGGAAGAGCTGACCATCCAGATGTTCCTCAGCGAGAAACCCTGACTGCACAGATCCATCCCGGGACAGCACCGTGAGGTTGTAACAAAGACTGTGGGGCTCTGGGGA-AGAGGAAATCACAGATGAAACTTCTTCCTGGAAGTAACTTCACATCAA-----TGTTTAACACACAGGTCTGCTGTCCCGACCTTCC--------TGAGGAGGCAGGAAATGCAAACAGGCAAAGGGACAAGAATGAGGATTTCAGACGCAAGGAAAACTGGGAAGGTGGGAGGATAGAGGAGGGGACTGAGGAACAGAAGAAGGGGGAATGGGGATGG-CAAACTTGTAGGCCAGGTGCCAGGGCAGGGCAGCCACAGGCCCCCTCAG-GGTATAGGGAGGAGGCCAATGGAAGGGGCTGCCCTGC-AGGTTCAAGGGAGGAGCATGAAGGCAGTGGTGGAAGGAAGGTCTTGCCAGAGGGGAGAGCAGAAACTGTAAGGGACCCAGGCTCAGAGGGACCCATGACCACCATGGCTGTGGTGCACAGG--TGAGGGTGAGATGGAGG--CAAGGTCCACTGCCTTTGAGGAAGGCTCAACATGGACAAGGTGGGGGCAAGGG-AGACTTGGCTGTGAGGCAGGAGGG--GCAGGT---AGGCTGTGGTG-CCAGAGACGTTTTC-TACTAGGTCCGTATCCC-AGGGAGAAGCAATGGCAATGCTT------------CAGAGTGGCATGGCAATGCCCCAAGTAGGGAGGTGGATGGACCAGTTGGTGTCCCCTGGG s canFam2.chr12 71548173 1370 - 75515492 TTGCATCCCAGGACTTCTTGATTTCCATGATCGCGGTCC-AGCT---GAGGATGGGGGAACAGTCCATCCACGGGTCTTCAGGTCATAAAGAGAGGAAGAGCTCCCCATCATGGCAGAAATGCCCAAAGCTCCTGGTGCTGTCGTCTT-CTGAGATCTTGAGCCCCATATCTCCTGCAGGGAATGCAA----GCCTGCCTCCAGCCAGCAGTGACTTCTCCCACCCTGTGTCCCTCTGACTTCCCTGCCCCAGTGACAAACTCCAGCCAGAGAGCCCCCCTTCCT----CTCCTCTATGTCTTCTCTGTGCTGGCTCAGTAATGGCCCCCTTAGGCTGAAGTCCACAGACCTTTAGCCCTCACCCCCACCCCCAGCCAAATCCA--GGAAAGAGACAGGGCTCTGCTCTCTACCCTGAACTTCCCTGGGAAAGTC--CTACCATCACTCTTGCTCTGACCCCACTCTCACCTTGCCTGTGCCTACAGGGCCAGGACACCTGTCAGACTCATTCTGAGGCTGTTTCCAGTCTCTCTCAAGTCCTTGGCCTCTGTGTTCTGCGTCTCAGA-CCCGGGACTGCTTCTGCCCACAGTCCCTGTGGCTCTAC------------CATGTCAAGGTGGAGGAAGGCTTGATCATCCAAGTGTCCCTCAGTGAAAAATCTC--CGATACACATCCATCTT-GGACTCCACTGTGAGGTTATAAGAAAGACTGCGGGAATCTGGGGAGGGAGTAGATCACAGATGAAG---TAACCTGGAAGGAACAACATAACAGATCCTTCTCTGA---AAAGCTCTGCTGTCCTGAACTGCCTGAAATATTGAGCATGCAGAAAATGCACCTGTACAAA-GGACAAGAAGGAGGCTTTCC-ATACAA-GAAGAGAGGAAAGGGGGCAGGAAGGAG--AGGGAAGAAGGAATGGC--AAAGAGAAGTGGAGATGGACAGACATGCAGCATGGGAGCCAGGAGAGGAAGGCATGGGGTCCTGTGGGTGGTGTAGGTAAGAGGTCAAGGGGAGATACTGGCCTGCAAGAAGCAGGGGGAGGGCAAGAAGGCCATGGGGAAGGAGAGGCCTTGTGAGCAGGGAG-GCAGGGGCAGTGGGGAGCCCAAGGTT-GAGTGATCCATGGCCAGAGATGCCACGGTGCTCGGGGATTATGGTGGAGTGGAGAGTCAGGGGCTGCTGCCTGTGGTGAAAGTTCATCAGGGAAGAGATGGGGTCAAGGGTAGAAAGGGCAGTGAAGCAGAAGGGCTGTATGTTGGAGGGTATGGTGACCACAGGGGAGCTCAGGGTGTGTCAGTGCCCCTAGGGGTGAGGAAGGTGTAGGCTTAGGCCCAAGTGGAAGAGTGGCAGGCTGTGATCCCAGGTGGGGATG-GGTTGGACCTGCCAGTGTCCTCTGGG a score=7661 s hg19.chr6_ssto_hap7 1053075 306 + 4928567 GGGTGACCCTGGGGGAACTTTGGT--------------------------TAGGGTGAGGACAGGAGGGGAGGGTGCTCTGAGTG--AGGGT---------GGGGCTTGGGAAAGATGAGAACTTGCTGAGGGCCCAAGGCAGCTGGGCAAGAGGTAGGAGCAGCA--CAAGGTCCCAAGGCGGAGAGGGGCGGAGGGACCAGGGAGGGATGG--TCCAGCACCCGTGGGCTGGAGTGGGGGGTCCTCAAGAGGGTGGGGCTGAGGATGAAGGAGTAGGGAAGGGG-----------------CCACCGTGAGGCAGGGCCCAGAGCAGGCACCTGCACTAGA----------GGGGAGGGGGCATCTGCCCTG s canFam2.chr12 71549947 355 - 75515492 GGGTGACCCTGAAAGAACTTAATTACAGGCTGACAAGAGAGGAGCAGGCATGGGCTGAGAGCAGG-GAGGAGGCACTGCTGACTGCAAGGGCCCCATCGGAGGAGCTCCTGAGAGAGGAGAGCTTGGTGAGGGCC--AGGCAGGGGGGCGC----------CAGCAGGCAAGGGGCCCTGGGGGAAGGGTACAGAGGGATCAGGGAGGTCTGGAGTCCAGCCCACAGGGAC---AGTGGAGG--CCACAAGAGGGTGAGGGT-AGGATGAAGGAGTGGGGACAGAGTGGTGCTAGGTGCTGGCCCAGGATGAAGGAGGGCCAAGGGCAGGTGCCTGCACTGGAAGGGAGGGAGGAGGAGGGGGCACCAAAACTG a score=4090 s hg19.chr6_ssto_hap7 1053414 308 + 4928567 GCACTAGGGCTCCCCTTG--GGTGGTCTAGAGGGGAGTGGGACGGAGGGAAGACCCTGAGACAAAAGGCGGCACCAGAGAGTTAGGGTCAGGGAGAGTTGGGAGTGGGAGGCATAGGGGCAGCCCTGGGTTAAGGCTGCTTCTAGGAAAGGCCCATAAGGGAGGCAGGAGGGACCTGCGGTGGCGGGGGCAGGGAATGAGGCAGAGGACATCCTAGAAATGTATCAGAGAACTGCAGATAGGAAGGGGTAACAGGGAGCTGGGAGGGCAACAGGACCCAAGGTGCCCTGAGGGCAGGGGAGGAGGTGGGA s canFam2.chr12 71550335 246 - 75515492 GCTAGAGGGCTCCCCTTGCTGATGGC----AGGAGAGCAG--TGGAAGGGAGACTTCTAGACAAAAGGTCATCTCAGGAAGATAGAGTTGGAAAAGTTGGGGGGAGGGAGATCTAGG------CCAG----AAGCCTCTTTGTGGGCAGTGGCCATGAGATGGAAA-------------GTGGTGAGGACCCAGAAAGGG---------ATCAGAGAAAGGAA--AGAGAATGGCAGACAGAGGGTGGGGGCA------TGGGAG------------------ACTCTGAGGGGAGGCGAAGAGATTGGA a score=3634 s hg19.chr6_ssto_hap7 1054259 295 + 4928567 GAAGCAGGGTTGAGGTG---TGGCGGG-AACGGGCCGCGTCCACTCCCCGCACCCCCGA-CAGCGCACCTGAGCCCCGCCTCGGCCGCACAGCGCTCGCCGCTACCCACCCGGACCCCCAGAAACGCCCCGCCGCTGCCGCTCCGCCGAGGACCGCCAGGAACCCCACTTACCAGCAGCAGCTCC----CTGGGGTGCAAAAAGGGCAGTGCGGATCAGGAACAGCAGGACTAGGCTCATCTCCATGGCCCAGACTTTGCTTTCCTCGCAGTGGCTCAAGCGGCTGCCAACCCAGCGGAGCCGC s canFam2.chr12 71550581 264 - 75515492 GAAGGGGGCTTGAGCTGCAGTGGCAGGCAACAGGT---ACCCCCTTCCTGTGCCACTGGGTGGAAGACATGGTTCTC------------TGACACTCACCGAAACCCACCGGGACCCCTAGGTGCGCCCCG-GGGTCCTGCTGGGCCATTGACCAAGGTGAACCCTAC-CACCAGTGG-AGCTCCCCAGCTGAAAGGCAAAAGGTGCA-TGTGG-CCTGGAGTAG--------------------TGGCTACGACTCTGCCTGCCTCACGGTGGCCGTGGCCGTGGAGGGCTCAGCATAGCAGC a score=1496 s hg19.chr6_ssto_hap7 1056071 124 + 4928567 agtacattttTTTTTTTTAA----------CCAGGAACACCTGCACTTTATTGAATGCCATTGTAGAAAAGTGTGTGAGGATAAAGGGCTGATACAGAACTCAGCTCTGGGGCCAGGACGAGGAATGGAAGTTG s canFam2.chr26 27444335 107 + 42029645 AGTTCTTTTTTTTTTTTTTGTCCCCTTCCCCCCCACACACAAGTACTTTATTGAATTCAATTGCAGACTGATGTGTA--TATAAAATGCTGTGA-------------------------GAGGAGTGACAGCCT a score=18006 s hg19.chr6_ssto_hap7 1056209 487 + 4928567 CAGGTCATGGGCAGAGCTCCTGG---CCTGGATGATGCCTCCTGATCTATCGACAGACTTGGAAGATCAACACTAGG---------ATGATGATGGTGAGCAGAATGGTCATGATGATGCACACAATGAGGGCTCAGATGTTCAGGTACTTGGCAGTGGAGGCATAGGCCTGGGCCCCAGTCAGGTCTCCAACCATCTTCCTGTCCCTAGACTTCAGGGAGTAGGTGAATGCTATGAATCCCAGGCAGTGGGGGTTCATGAAGAGGATGTTGGACAGGGACCAGACAACATAGTCAGACACGGGAGGTCTCGCTGCAGATATGGATCATGGTGGACATTGGGGGAGCAGGGTTGTGGGGCGCCCCCAGCACAGCCACCTCATGCTCCTCCTTGAGCATCTCATAGCTGGGGTTGGGGGGCGGGGGAGGGCAGCCACTGTTGGCAGGAATGAAGAAGGTTTGGGCAGTGTGGTTCATGGTGTCCAGCAAAGACCAGCTGT s canFam2.chrX 24767414 477 - 126883977 CAGGTCACGTG--GGGCTACTAGTAGCCTCTATAACCTTGTATGATCTCTGAAATTGCTTGGAAAATTATCAGTGGGCCAGTGGTGAGAATAATGATGAGCATAATGATCAGAAAGAGGCCTAAAACCAGGGCCCACATGTTCAGACACTTGGTGGTGGAGGCATAGGCCTGGGCTCCAATCATGTCACCCACCATCTTCCAGTCCCTAGATTTCATGGAGTAGGCCAATGCCACAAAGCTCAGGCAGCACAAGTTTATGAGGATTGTGTTGAACAGGGACCAGATAATGTGGTTGGGCACAGCCAA-CTCACTGTGGATATTGATCATGGTGGTTATCCAAGGAGCCCAGTTTTGGAGTGCCCTGAGTACAG-CACCTTGTGCTCCTCTTTGAGCATCTCCTA-----AGTTGGATGATTCAGG-----------TGTGGGCACCAAGAAAGAAGGGCTAGGAATTAGGGTTTATGGTGTGAGGTGGAG--CAGTTGT a score=24890 s hg19.chr6_ssto_hap7 1068370 935 + 4928567 GGCTCAGGGAGTATAACTGGATGCCTTGAACAAAGATATGGGGTCACTGGAAAGAGAGGACCGGCTGTCCCTCCCC--ACTAAGAAATAATTAACTGTTAGATGAGGGGGAATTCCTTTTCAAGGGCTCTGTGGACTGTGCTGCTCTGGAGGGGGTAGGGAGAGGGAGGAGCCCT-GAGGTCTGGGCTGGGGTGTGGTTGGGAAGGAGCTGAG-AGCTGAGAGCTGTAACTACACAAGGAGCTGCAGGGGTGAGGTTGGTG-----------CAGG---------GTGGGATTTAGAGGATTTCCCCCAGACTCCTGTGCTGATCCCCTTCATCTCCTCCACCCCCACCCTTGGTGTCTGTCAACATGCGGGGGTGCCCTCATCTTCCCACTGCCCCTGGAGCTGTTCTACTCTTCCACGCTTGCCTTGGGGTTTTCAGAGCAGCATCTTTGTGAGTCCTGGAGTGCTAGGGACCAGGAGGGGA-GAGGAGGCAATAGCCTCCTTTAATTTGGCAACAGCTTTTCGTTATCATCTCCACTTTCCAAGGCAGGAAAAGTGAAGGCAACAGCTCTGAGAGATCCTGGA-AGAGGAAAAACCATGGCGGGTGAGGCAGGGAGCTGTCTGAGTTTCCTAGCAGACATCAGGAGC-----CCGCCCTTCCAGGCCTGGGCTTTGCTTCAGTGCCTGGCCCTGCATAGGCCCCTGCCCCTGTCCCGTTCTGCTGCCCCCACCTCCCTCTCAGCCTGGCCCCAGACAGAATCCAGACCAACTCCTGTCTGCTGTGAAAAATGTTCCTGCCAGTTTAGGCAGATCTTGCTTTAGAGCACTGGTGCCCAGCCTTCCACAGGTCTTGTGTCTGTTTTTCTTGGCACTATGTTTCTtctcatgtattcttctgaattggcaaggcaggaattacatcactggtttgcagatgaggaaactgactcaTATGGTTTCAT s canFam2.chr12 71480645 770 - 75515492 GGCTCAGGGGTTA-AACTGGACTCCTTGTGCAAGGA----AGGATATGGAGAGGAGAGGACTGGCTGTCCCTCCCCCCACCAAGAAATAATTAACTGTTAGAGGAGGGGAAATTCCTGGTCAAGGACTTCTTGGACTCTGCAG----GGAGGGAGGGCTGTGGGGAGAGAGCCCTCGAGGTGTAGG---GCGTGTGG---GGAAACTGCTGGGGATCTGGGAGTTGGGACTAGTCCAAGGACTG---GGTTGGGGTTGGTATCTATTTGGAACAGGCCTGTGAATATAAGATTAAAGGGATTCCTCCA----------------CCCCTCTGTCTCC-------CTACTTTTGGTGCCACTTACCCT-TGGGGGTGACCTC---TTCCCACTGCTTGTGGAGCTGGTCTGCTCTTTTGTGCTCGCCTTGGGGCTCTGGGAGCAGCACCTCCAGGAGCTCTGGGGGGCCAGGGGCCAGGAAGGCAGGAGCAGGCGACGGC------------AGCAACAG--------------------------------------------------------GAGAGCCAGGGCAGAGGGAGTACCATGGCTGGTGTAGCAGGGAGCTGTCTGAACTGCCCAACAGCCACCAGGAACTGGCTCCTTCCCTCCAGGCCTTGGCCTCGCTTCAGTGACTGGCCCTGCCCAGGGCCCTGCCCCTAACTTA-------------ACCTCCCTCCCAACCTGGCCCTAGACAAGA-----------------CTGATGTGAAAAA-GTTCCTGCCAGTTGAGGCAGAACTTGCTTTATAACAC---------------------TCTAAAAACTGTTCTCCT--------------TTCTCA---GTTCT---------GCAAGGTAAAAGTTACATTGCTGGTGTGC-----TGGAAACTGGCTCAGAAGGGTTTTT a score=5534 s hg19.chr6_ssto_hap7 1069305 162 + 4928567 TCAGCA---CTCATTCACTGTGAAAGTGTCTGTCAGGGCCAATTGTGGGCCAgatgtgcccagggttctatagctagctggtggaaaggcctgaagggttcatattcaggtccacttgacttgaaaactca----tattGACCTTACTTATGTACTAATTCCCACTTTA s canFam2.chr12 71482353 159 - 75515492 TCAGAAGGGCTCATTCA----GCAAGTATCTCTTA-GTCCCTCTCTGGGCCAGATACgctcaagg-tctgcagctggttggtgggaaagcctggagaattcattcccaggtctacctga----aaagctcagatctattgactTGGCTGAAGTAATGATTACCCCTTTA a score=19897 s hg19.chr6_ssto_hap7 1069812 617 + 4928567 TTCCCTTTCCCTCTTCTTGCTGGCCCAGAATGACCTTGTTTCTTGTCCCTGTCTAGCCCTGCCTGTTACAGGGGTTTGCCTTCTCTGGTAGGTCTGGACACTTTGTATTCCCTGTAACCTTGCCTCCTG----GCATATGA-CACTAGTACTAG-CCTCAAGCTCTGTTGGACTAGCGAG-CCTCACTCCACACCTCCTGAACTAGAACCAAAGCTCTGTGCACACACCATTCATGTGAGTC---TGTAGAGATCTCAG-CTTCCTGCAGGGTGTTCTGAAAGGGTGTTCTGTTGTGACTGGAGGGCATAGCCACAGGTCTCTGGGCAGAGGTGGCTCAGAAAAGAGTGGGTGGCCCCAGTTTGGGTCATCTGGGA-AGGGGAAGATTTTCAGATAAAAACCCATGCCTTAGAAGACAAAACTACCCAAGAGCTGGCAGCAGCTAACCAGCTTGCTA--TCTGGGATACCACTTTGCAGTGGGAGGGAAGATAGCCTCTACCATGGTGTAGGGGTCCAGGGACCAGGCAGGGAGGTCTTCCTAGTGGTCAGTGCTTCTCACAGTTGG--------GAGATGAATCACCTTTCGATGAggccaaagacctcatgttcctcactagctgacttgttcccac s canFam2.chr12 71482512 592 - 75515492 TTTCCTGTTTCTCTTTTTGCTGGCCCAGAATGAC---ATTTCTTGT--CTGTTGTGCATTGCATGTTGTAGGGATTTGCATTCTTTAGTAGTTTTGAGCACTGTTGTGTCATTGTACCCTTGGCTTTTGAAAAGAATGTGACCACTAGTAATCGATTTTGAGCTTTGTTGAACTTGTGAGCCCTCACTATAAA---TCTGTAGTAAAAC---AGATGTATG------------ATGTGAGCCTTGTGTACATGTGTTAACCTTTTTGCAGTATATTCTGAAA---TGTCC---TGTGGCTGGAGTGTATAGTTCCGTCCTTATGTGTAGAGGTGGCTCAGAAGGGAGTGGATGGTCCCAGTTTTGATCATCTGGGAGAAAGGTAGGCCCTCAGAAAAA----TGTATCTCAGGAAACAAGATGGCTGGAGAGTGGACAGTTGCTAACCAGCTCACTGTTTTTGTGACATCATGCTGAATTTGGTGGGAAGATGGCCTCTGCCATAGCATGGAGATCCAGGAACTGGGAAGGGTGACCTTCCTGGAGGTCAGTGGCTCTCAAACTTGGGGCAGGGAGAGTTGAACCACC--------------AAGACCTCACATTCTCCATTAGCTGACATGTTATCAC a score=19179 s hg19.chr6_ssto_hap7 1070429 444 + 4928567 tcagtggaaaaagaacccagaacctttgcaaaattttaggagagaaggactttccctcttgtctcttagtgccagggttatgcatgactcatacttgaattgcaatgtgtacacagcttaaagtcttaattattagaacataagaggcccaaaccactgttgttatagatatgtaaaactatgcagtacaaaattaaacaacccccaaccaattaacagtggagataaatt-atcaatatttgtaaatttaaaacaagatcgacagccctttagaaaaacaacaaaaaatgagacttttgcaagacaatctaaatgatacgctaataacaaa----ccttcatgaaaat--gacatttcgaccatctgAG--TTTCTGCTTTAAGTTACAAATTCCAAAAGGTACTAATCCCCAATAATTTACAGTAGGGAGCCCTAAGCCACAAAGAAAGGT s canFam2.chr12 71483287 432 - 75515492 TCAGTGGAAAAAGAACCAAGAACTTTGGTAGGATTTTGGGGGATGAGAA----GCTTCATGTTTCTTAGCGATAGGGTTATGTATGATTCATATTTGACTTG---TATATGTATGGCTTAAAGTATTAGTTATTGGAACATAAGAAGCCCAAACTA------------ATGTGGGAAACTATCCAGTATAAGGTTAAAGAGACTATAAGCAACTAATATTGAAGCTAAACTAACCACCATCTATAAATTAAAAGCAAGATTTGTAGCCTTTAAGAAAA--TACAGCAGATGAGACTACTGTAGGACAATCTAAATGATGCACTAATAATAAAGTATCCTTCCTGAAAAGTAGGGATTTCTACCATCTGAGTTTTTCTATTTTAGGTTATGAGCTCTAAAATGGATTAACCTCCAATAATTTACAGTAGATATTCCTGAACTCTAAAATAGAGT a score=4165 s hg19.chr6_ssto_hap7 1072420 105 + 4928567 CAGGGTAGCCACAGGCTCTGAAGACACTGATGCTATAATTTGATCATATGCTATAATGTAACATCAGTGAACCACTCATTGCATGTGTGCCTGCTTTCCAGGCAT s canFam2.chr23 13034057 105 - 55389570 CAGGGGAGTCATAAAGTCTGGAAATATGCATACTATTATTTTATCATGTATTATAATATAGTAACAATAAACCAGTTATTATGTATTTGTCTGTGTTCCCAGAAT a score=5894 s hg19.chr6_ssto_hap7 1093931 165 + 4928567 AAGGGTTAACGAAAAATAATTAGATAAAAAAAT--TTTGATTTTCAAAATCGTGAAACAAGA----GTTTTAAATTtgcttttaatatatattcaaatccttt---aatactgttctcttccagagatgctgcttaatttcctc-tcttgagtgtgg-ctgggacttaatgatgca s canFam2.chr12 3982374 176 + 75515492 aagcattcaaggaaaataattgggtgaaagaagcatttgatttacaaaattctgaaataatatttagttTTGATTTtggttttaacaggttcacaaattctttgacaacaatcctcctttccagagatggatcttaatgtcctcctcctgagcatggacttgcactgaatgattca a score=18573 s hg19.chr6_ssto_hap7 1094484 532 + 4928567 cttctaactggta----atgctgacataagagtttgtgactctgggtgtag-aacataaaactcactgcagcctccccct-------------------------tctctctcaatgtctctgga----------------atcatgagctctgggggaagccacctgctgtgccataagcagccctgaaggaaggtccatgtggctgagaactggggccttctgggaacagaaaacaaggaactagggcttttcc--------------------aacagccatgtgacccatccatgtttcatgtgaatcc-tcagtcccagtgaagcactcagatgatgcaggcctaggctgacaac---------------tggactgcaaccttgtgagaggccctgagcaagaagcactcaggga--aacctctcctggattcctgaccattggaacctgcgggagatgatgaatatttgccattttgagctgctaagttttacataatttgttatgcaatagtaaataactaacacaT-TTTCACaaaagaggatgtagtattacacattaatttgcatttgctctaaatttatcattattattaatattattgttattg s canFam2.chr12 3982550 613 + 75515492 cttctaactgatagaaaaggctgatgtgatggtgtgtgacccaggacctaggaacataaaacacattgcagcttctacctggctttttctctctctttttgtctgtctgtctctctgtttctgtatctgtctctgtctctggttacttgcactgggggaaga-agctacctagttattagctacctaatggaaaagtccacacagctaggaactgaggccccttgggaccatctgggaaggaaatgaggcctcttcctcatttcctcatttccctcaacagccatgtgagggagccttatgtcctaggaatccctcagccccagtcaagccatcagatgatgcagtcct-gtctgacaacccagtcctgtctgacttgactgcaacccagagagaggccctgagacagaagcactcaggtataagcctctcctggattcctgaccctgggaaactgtgggacacaatatatatttgttgttctgagctgctatgctgtggataatttgttaggcaccagtacataactattataGAgtccaaagaagagaatgaagtattgcactttaatttcgattggctctaaattaactatgatattaaacatcatc--tattg a score=9813 s hg19.chr6_ssto_hap7 1095334 270 + 4928567 gttttaaaaggtaaggagaatgtccatggct----gaagaggatgcattttattaccattcacaatgatcactttacttgaacttcaatttccaactgtgtccaaattaaacacaaaaggaagaTCCAACCCTTGCTGGGCTGattctttgatggcccccaacagccacctcccggtcattcactttcccccagttattcaagcaa-ctctagtgtagatgctgctgtgaagggatttagcagatataactaagggcctcaattagttgacttta s canFam2.chr12 3983163 272 + 75515492 gttttaagatttaagaagaatatctatgtctaagggaacagaatgcatattattaccattcacaacaatctatttatttggagtttgatttctgacggtaaaccaattaaaca--aaaggaagaagcaggctGTCCtaggcagatgctaagatggcctgccataactaacctctggttattcatattcttccagttgttggatcaaacactaatccaggtgctagcgtgaaaggactttgcatatgcag-tgaaggttcagatcagctgcattta a score=27869 s hg19.chr6_ssto_hap7 1095625 1120 + 4928567 actgtcctaataaggtgagtccttgaaaggtctgtgttctttctgagcatagagatttgcagtgtgagagggattcagcatgaggggtttcctctaccgtgggctttgaaaatgaagaggctgtgtaggaaagaacactgttaggcaccaggaattgagcacagccctgcctattctctgtattgacagccagcaaggaa-cagaaacctcagtcttacaactgccagaaactgcattctgccacc---tctgtataagcctgaaggaggat-------tcaaaatgaaaacacagcttttggaagcccagaacagggattctatccacatcttgcccagatttctgacc-aaggaagtataagcagataaatgggtgttgttttGCCAGTC---------GTGGT----------------------------------------AGTGCAC---------------------GAATGAATTGATGAATTGATATGCACACTAATTACATAAAATAAAATATTTCTTAACTTTTTCAGTATTTTACATTTTATAATTTTCT-GTGATG------CAATTTAATAGACTCATATTTCattcattcagtcaagaaaaattaatttaatccctacaatgaaccaggtgTGCCCTCATATGCT-----------------------------------------TACGTGCCTGACATTCCAGAAGCTTCACAAGACCAaggtggagccagtggaatgttttaggtggagaaatgacacactctgactcacaggagcaggaccactg-------tgcagagaacagTCACG--TAGCAGGTAATGGGACAGTGCTAGTGTCACAAATAAGGAGTGACAAGGTGGTGGGGACTAAGGGGAGAGGAGGGCCTGAGGGATGAGAGGAATGGAGGGAAGGGCTGGAGATGCAGGAGGTGAGGAAATGGAGCAGAGGGAAAGAATTCGAAAGCAGCAGAACTCAGGT---TTAAACACATTGTTTTAT--ATATTTTAATACATCAATCTACAGAGCCTT-GCAGGGTGATCTTTGCAGTTGGCCTTTAATACCTTATGTGGGTCTGCCTAAAAAC---TAATTTTTTTATGTTAATCAGGTTTAAAAAATA--CTAAGTGTTCATATAAAATATACACAACACTTAGAAGTGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTGGTGAGGGGCATTGTGACTGCATTGAGTGCTTGCCACTGTGAGATGAATAA s canFam2.chr12 3983717 1216 + 75515492 cctgacctaatcaggtgagcccttaatagcacagggtgcttcctgagtgaagggactggaagagtgagcaggattcattgtgagtgg-------------aggctttatgatggaaggggctcc-cggcaagcaatgctggtggccac-aggagctaagaacagc-------atccc----actgacagcgtgccaggaagtggagactgccgacctccaactacaagaactggaattctgctaacagatctgtacaagcttgtagggggacctcaagctctagttgcaaacactgtctgtgacatgct-gaggagaagacccctcagcatcactcctggactgctgacctacagaactgtgcacatacacatgggtgtggtt--gtaagtcactatgtttgtggttaatttgttatgcagcaatagaaaaccaccacaTAGCCTCAATGCACATCACATTTTCCCAGTGGAATGAATGAATGTATGAATCGTCGTGCACACTAGTTGCATGAAATAAAATCTC-----ATTTTTCATGTATTTTCCATTTTGTGATTTTTAAGTGATGGGATTAAAATCTAATAG--TCATATTTCattcattcattcaacaacaattaatttagtgcctactctgcaccaagaatggctttctacactaggggtacagctttcctcaaagtagcccaaagcacctgtgcttcatgctttacattctagaggCTTCCTAAAagtgagatggagcccctggagcattttcagtgatgaaatgacacattctgactcacattagcaggatcactgaccccagtggagagagtggccctgggtggcaggtgttggggtggcagcagggtgc--aatcaggag-----AGCGGGTGGAGACTAAGGGGATGAGAAGGCATGAGGGCTGAGAGAGATGGAGAGAAGGGCTGCAGATGCAGGTG--GAGGGAGAGAAGCAGTGGTAAAGAATTCTAAAGTAGTGGAATTTGAATACATTGAATACATTGTTATATCAATTTTTTATTTAATC--TCTATTAGGTCTTAGCAAGATATTGTTTGCATCTAATATTTACTGCACTCTGTGGA-----CTGAATACCTGTGGCCTCCTTATGTT-ATCAGGGTTAAGAAGTAACCTAGATGCCACTAATACCCAAATAAAATCGTCCTTAGGTGCTCATTCATACACACAGGCAACAC-TGAATGCTGATGACGGGCATTTGGACTGCCCTGAATACTTGCAACTATGAGGTGATTAA a score=10194 s hg19.chr6_ssto_hap7 1096791 432 + 4928567 CCTTGTATT-AGGAGATGTCCTGGACTCACACAGAAACTCAGGGCTATGGAATGAAGGTAAATTTAAAATACTACAAGCGGGAGTCACAGATACATTGTCTGGGAAAGTGAAACTTAGGAGCTTTGTGATTCCTGTTGTAATGCT-TTTAGACACATTTATATGTCAAGGGACCAAAGTCACATTTTTGGCCGATTAGATTCCTGATC-ATTAGGAGTTACCAAGATTCTGCTACCCACTGTAGTTAATAAACAAAAAGCAAACTGGTCTCTAT-------TCTATCTCATGCACTCAGGCACAACTTTTCCAGATTTAAAAAACAAACAAACAACAACAACAAAAAACCCTGTCTCTACACCTCCATTCCCAGGGCAAGCTCACTCTCTGGCAACAAGCTCCCTGGG-GTGATTTTTCTTCTAGAAGAGTCCACGGGGACAG s canFam2.chr12 3985518 386 + 75515492 CTTTGTATTGAGGCTATGTCTGGAATTCACAGA------CGGAGCTATGGAACAGAGGTCATTTTAAAGCACAAAAACTTAAAGTCTTGGCT--------TGGGAAAGTGAAAATGACAGCTTTGGTTATTTC------AAAGCTGTTTAGGCAAATTTATACAGAAAGGA--TAAAATCACTACTTTGACACATGCGAGTCCCGATCTCTCAGGGGTTGTCAAGATTATG------------GTTAAGAAACAAGAAGAAAACTGGCCTCTGTGAAAATCTCTAGCTAGTGC-CCCAAGCACACCTGCCTCAGGTACAGAAGACA----------------------CCTTGTTCCTTCACCAATTGTCCCACAGTCAGCTCTCTCTCTGGCATCAAATTCCCTGAGAGTAAGTTTCCTTCTCAGACAGTCCAGGGGGACTG a score=1989 s hg19.chr6_ssto_hap7 1097223 102 + 4928567 GTAAGGAGTAGGAGGCAGGGAGTCCAGTTCTGGGACGGGGATTCCGTGATGCAAAGTGAAGAGAGAGGGACGGGGCCCATTCCGAGGGTTTCTCCCTGGTTT s canFam2.chr12 3986271 99 + 75515492 GTGAGGGGTTCAAGGCAGAGACTCAAGCTC-AGCAAGGGGTCTCCGGGAAGGAAGAC--AGGAAAAATGGCTGAGCCCAGTCTGGTGTCTTCACTTGGTTTC a score=51257 s hg19.chr6_ssto_hap7 1097325 1252 + 4928567 CTCAGACAGCTCCTGGGCCAAGACTCAGGGAAACATTGAGACA-GAGCGCTTGGCACAGAAGTAGCGGGGTCAGGGCGAAGTCCCAGGGCCTCAGGCGTGGCTCTCAGGATCTCAGGCCCCAAAGGCGGTGTATGGATTGGGGAGGCCCAGCGCTGGGCATTCCCCATCTTTGCAGGG-TTTCTCTTCTCCCTCTCCCAACCTGTGTCGGGTCCTTCTTCCTGGGTACTCACCGGGCTGCCCCAGTTCTCACTCCCATTGAGTGTCGGGTTTCTAGAGAAGCCAATCAATGTAGCCGCGGTCCCGGTTCTAAAGTTCCCAC-GCACCCACCGGGACTCCGATTCTTCCCAGTCGCCGAGGAT-GGTGTCATGGCGCCCCGAACCCTGCTTCTGCTGCTCTCGGGGGCCCTGGTCCTGACCCAGACCTGGGCAGGTGAGTGCGGG--GTCGGGAGGGAAACGGCGTCTGTGGGGA----GTAGCTAGGG-----GCCTGCCCGGCGG------------------------------GGGCG------CAGGAACCCGGTTGCGGTGCCGGGAGGAGGGTCGGGAGGGTCTCAGCCCCCTCCTTGCTCC-CAGGCTTCCACTCCTTGAGGTATTTCCACACCACCATGTCCCGGCCCGGCCGCGCGGATCCCCGCTTCCTCTCCGTGGGCGACGTGGACGACACGCAGTGCGTGCGGCTCGACAGCGACGCCACGAGTCCCAGGATGGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCGGAATATTGGGAAGAGGAGACAGGGACCGCCAAGGCCAAAGCACAGTTTTACCGAGTGAACCTGCGGACCCTGAGCGGCTACTACAACCAGAGTGAGGCCTGTGAGTGACACCGGCCGGGGGCGCAGGTCACTACCCCTCCACATCCCCCACGGACCGCCCGGGTCTCCCCGAGTCTCTGGGTCCGAGATCCACGCCGAGGCAGCGGGACCT---------GGAGACCCTTGACCCGGGAGAGGCCCAGGAGCCGTTAC--CCGGTTTCATTTTCAGCCAAAA----------------TCCCCGCA------GGTTGGTCCTggcgagggcggggctcgg------tgggcggggctggccgcgggggcggggccagggTCTCACACCCATCTAGAGGATGTCTGTCTGCGACGTGGGGTCGGACGGGCGCCTACTCCGCGGGTATCACCAGCTTGCTTACGATGGCAAGGATTACATCGTCCTGAACGAGGACCTGTGCTCCTTGACAGCCGCAGACACGGCGGCTCAGATCACCCAGCTCAAGTGGGAGGCGGCCCGGg s canFam2.chr12 3936149 1302 + 75515492 CTCACACAGCTCCCTGACCAGGACTCAGGGAGTCAGAGTGACAAGAGCGCTGTG-------------------GGGCAAGGTCTCAGGACCCCGGGC-TGCCTCTCAGGCTCTCATGCCCCAG-GGCGG-GTCCGGGGCGGGGACGCTCAG-GCTCGGGAGTCCCCACCTCCCCGGGGATTTCACTTCT---TCTCCCAACCTGGCTCTGGGCCCCCTGCCTGGAGACTCATGACGCAGCCCCAGCGCGCACTCCCATTGGGTGCAGCCTTTCTGGAGGAGCCAATCAGCGGCACCGGGTCCCGGGCTCTGAAGTCCACACCAGAACCGCCAGGACGCAGCTGCTCCACCGACCCTAAAGGTCTGGGCTATGGTGCCCGGAACCCTAGCCCTGCTGCTGTCGGGGGCCCTGGCCGTGACCCTGACCCGGGCGGGTGAGTGCGGGCGGGAGCGAGGGGACCGGCGG--GCGGGGACGCGGGACCCCGGGAAGccgcctctccgccgcccccggcccctcccgcctccgccccgccccgggcatctcccctgggccccgggccccgcGGCGGGAGGGGGTCGGGCGGGGTCTCAGCCCTCG----GCTCCGCAGGCTCCCACTCCCTGAGGTATTTCTACACCTCCGTGTCCCGGCCCGGCCGCGGGGACCCCCGCTTCATCGCCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCGGCCACTGGGAGGATGGAGCCGCGGGCGCGGTGGATGGAGCAGGAGGGGCCGGAGTATTGGGACCGGCAGACGCGGACCATCAAGGAGACCGCACGGACTTTCCGAGTGGACCTGGACACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTGAGCGGCGCGGGCCCGGGGC-CAGGGCACGACCCC----CATCCCCCC--GACCGGCCGGGTCGCCCCGAGGGTCCGGGTCCGGGCGTCACCCCGAGTCCGAGGCCCCCCACCCTAAACGGGTCCTCAGAGCCAGGAAGAGGCCGTGCGCCCTTTCGAGCGGTTTTCCTTTCGGTTTGAACTTAGAAGTCTTGCGGTCCCGGGACTACTCGGGTGTTCACCGCGGGGCGGGGCCTCGGGGCCTCGGGGCGGAGCTGACCGCGGGGG-GGGGCCAGGGTCTCACACCT-TCCAGTGGATGTTTGGCTGTGACCTGGGGCCCGGCGGGCGCCTCCTCCGCGGGTACAGTCAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACGCGGCGGCGCTGATCACCCGGCGCAAGAGGGAGGCGGCAGGTG a score=7139 s hg19.chr6_ssto_hap7 1105734 169 + 4928567 TTGGGGACAGGGTCTCCCACCT-CCAGTGGATACACAGCTGCGACCTGGACCCGGACCGGAGCCTCTTCGCGCGGGGATGAACATACC--CTACGATGGCGCCAGTTACCTCGTCCTAAACCAGGAACTGCTCTCTTGGACCGCAGCGGAAAAGGCGGCTCAGATGTTTTGG s canFam2.chr12 3937258 171 + 75515492 GGGGGGCCAGGGTCTCACACCTTCCAGTGGATGTTTGGCTGTGACCTGGGGCCCGGCGGGCGCCTCCTC-CGCGGGTACAGTCAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACGCGGCGGCGCTGATCACCCGG a score=61998 s hg19.chr6_ssto_hap7 1105912 2167 + 4928567 ATGCAGAGCTGCTCAAAACCTACCTGCCGGGAAGGTGGGCGGAGTGGCTCAGCAAAGGCCTTAAGAATGAGAAGGAGAGGCTGCAATGCGCAGGTACCAGAGGCCACGGGTCGCCTCCCTGATCTC-------CTGCAGATATCCCTGAGCCACCTTCCAAAAGAAGGGGAGGAAAATGGGACCAACGCTAAAATATC-CCTCTCCCTCTTGTCCTGAGGCAGAAGAGTCCTCCTGGGTTTCTA-AATCCTATACCAGAGAGTGACTGAGGGCCCGCCCTGCACTCTGGGACAATTAACGGATGAAGTCTCTGCGGGAAAGGAGGGGAAGACAATCCCTGGAATACTGATACGCGGTACCCTTTGACCCCCCAGCAGCCTTGGGCACCAGGAATTTTCCTCTCAGGCCTTGTTCTCTGCCTCATACTCAATGTGTGTGGGGGTCTGATTCCAGCTCTTCTGAGTCCCTCGGCCTCCACTCAGGTCAGGACCAGAAATCTCTGTTTCCGCCTCAGACA---------------------------------CTAGAACTTTCCAAGGAATAAGAGATTATCCCAGGTGCCTGTGTCCAGAATGTTGTCTGGGTTCTGTGCTCCCTTCCC-CACCCCAGATGTCCCATCCATTCTCAGGATGGTCACATGGGTGCTGTGTC------TCATG-AGGAATGCAAAGTGCCTGAATTTTCTACCTCTTGCC-CTCAGATCCCCTGAAGGCACAGGTAACCCTCCACCCCATCTCCAACTATGAGGCCACGCTGAGGTGCTGGGCCCTGGGCTTCTACCCTCTGGAGATCACACTGACCCAGGAGCGGGATGGGGAGGACCAAATTCAGGATGCAGAGTTTGTGGAGACCAGACTTGCAGGGTACAGAACCTTCCAGAAGTGGGCAGCTGCAGTGGTGTCTTCTGGAGAGAAGCAGAGGTACACATGCCATGTGCAGCACGAGGGGTTGCCTGAGCCCCTCACACTAAGATGGGGTAAGGAGACGAATGAGGGGTCATGTCTCTTCTCAGGCAAAGCAGAAGTCCTTCTGGAGCCTTTAAGCAGGGTCAGGGCTGAGGCCTGGGGGTCAGGGCCCCTCACGTTCACCTCCTTTCTTAGAGCTGTCTTCCCAGCCCATCATCCCCGTTGTGGGCATCATTGCTGGCCTGGTTCTTCTAGTTGCTGTAATCACTGTAGCTGTAGTCGCTGCTGTGATGTGGAGGAATAAGATCCCAGGTAGGAAA-GGGGTGA--GCTCTGAGTTTCCTTCTTCCATTGGTGGATTTCAAGCCCCAGGTAGGAGTAGGCTCATATCTTGCCTAGTT---GTGAGGCACCATCTCCACACACATTTACCCTGTT-CAGAGGCCCTGTCTATCAACGCTTACTCTTTTGTAAAGCacttgtgaaaatgaaggacaaatttatcacct--tgattgtggtcatggGAACCTGACTCCCAGCAGTCACAGGTCAGG--GGAAGGTCCCTGCTGAGGACAGACCT-CAGGAGGACAATTGGTCCAGCCTCAACACATCCTCTTCCCTTGG---GTTTTCTGATCCTGACCTGGGTCTGTAGTCACAGTTCTGGAAAC-------------------------TCCTCTAGGATCTCAT-GCCCTGCCTCCTCCCTGGCCTCTCACAGTTTGTTTTCTTTCCACAGATGGAAAAGGAGGCAGTTATGCTCAGGCTTCATGTAAGTGTGGTAGGGGTGGGAAGAGTGATCCCTGAGATCCTTGGGATAGTGTAGACAGGAGCCCATGGGGGAGCTCAGCCACCCCAAAATTCCTCCTTTAGTCACATCACCTGTGGGCTCTGACCAGATTTTGTTTTTGTTCCACCCCAAACAGGAACAGTACCCAGGGCTCTGATGTGTCTCTCAAGGCTTGTAAAAGTGACACCTTAGAGGGCCTGAAGTGAAAGAGGAGTTGGGCAGAGGGGACACAACTAAGCTCTGGAGATTCTTTGATTTGGAATTTTTCAAGGTGTGGTGGGCTGTTCAG--TGTCACAACTTACTATGACTGACCTGGATTAGTTTATGACTATGTTTT-TTCTAAGA----TTGCCTTGTGAGGGACTGA--GATGCAAGATTTGTTCATGCCTCCTCTTTGTGACATTAAGAGCCTCTGGCTTCTCTTTCTGCCAAAGGGTCTGAATGTGTCTATGTCTACAGTAAC---AGGTAAGAAA--TGGGAGACCAGCCCATCCTCATGTCCACCATGACC s canFam2.chr12 3937451 2118 + 75515492 ATGCAGGGCACCTGAGGAACTACCTGGAGACGACGTGCGTGGAGTGGCTGCGGAGGTACCTGGAGATGGGGAAGGAGACGCTGCTGCGCGCAGGTACCGG-GGCCCCGGG---CCTCCCCGATCTCGCCTCCACTAGGGA-------GGGCTTCCCACCA------GGAAGGGAATATGGACTCAGGGTCAGAACACGGCCCCTCCCACGGGT--GGGGACAGGGGA-TCCGCCTGGGTGTTGATAGTCCTACTAGGGTGACTCACCCAGAGGCCGCTTTTCTCGA-AGGACAATGGAGCAATCCAGGGTCTCCGGGAG-GCAGGTGGAGGCCATCCTGAGATAACCGCCA-GTGGTGCCCTTTGACCTGGCAGCTGG-GTGGGAACCATGACTTTCCCTC-AAGGCCTTCTTCAATGAA--------AACATATTTGGAGCTTGAACTGGGAGTTTTCTGACTCCTTCAGCCTCCACCACGGTCAGGACCATTAGTGTGC-TCTCCACCTTAGACCTGCAGCCTCCTACCCTGGACTCTCTCCCTGATTCTAGAA-TTTCTAAAGATTAGGA---CATCCCAAAGGCT-------AGGTTGGTGACTGGGCTTTGTGCTTCTTCCAAGTGAACCAACTGCCCTGTCCACCCT-AGGATGGTCACACAAATGCAGTCTCAGTGGACCACGCAGTTAACCAAAGTG--TGGGTTTTCCAATTCTTCCTTCTCAGAACCCCCCAGCACACGTGTGACCCGCCACCCCGTCTCTGACCATGAGGTCACCCTGAGGTGCTGGGCGCTGGGCTTCTACCCTGCGGAGATCACCCTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACAGAGGTTGTGGACACAAGGCCTGCAGGAGATGGGACCTTCCAGAAGTGGGCGGCCGTGGTGGTGCCCTCTGGACAGGAGCAGAGATACACGTGCCACGTGCAGCATGAGGGGCTGGCGGAGCCTGTCACGCGGAGATGGGGTAAGGAG--GGCCTCGGGGTAGAGCTTCTACTCAGGGCAAGT-GGAGCTCTTCTGGAGAATTTCAGCAGAGTCAGGTCTCAAGCCAGAGGCT---GGACCCTCATCCTCCCTCCCCTTTCCAGAGCCTTCCCCTCTGTCCACCATTGTCATCGT---CAGCATTGCTGCTCTGGTTCTCCT------CGTGGTCGCTGGG---GTGATTGGAGCTGTGATCTGGAGGAAGCAGCGCTCAGGTAGGGAACCGACTGAATACTCTGTGTTTTCCTGTCCTGTTGGGGGGTTT-----CCTAG---GGAGCACGC---TGTCCTGCCTTGTTAACGGGAAGTACCG--TCCATATGCGGTTACTCTCCTACACTGGAGCTGTGTACTCACACTCACTGTGCAGCAAA-CACTTGGGAAAATGAAGGCCAGAGTTTTGCCTTGGTGATTCTGGTGACGGGGA-CTGATTCCCAGCCGTCACAGGACAGAGCGGAAGGCCCCTGCTGAGGACAGACCTCCAGCAAGTCAGGTGGTCCAGTGAC------CCCTCACCTCATGGCTTGTCTCCTGACCCTGACCTGGGCGGTCAGTCAGAATTCTGCAGACTCACTCTGCACCAGGACTGGGAGCTTCCTCGAGGATCTCCTGGCCCAGCCCTGTGCCCGGCCTCTCACATGATGTTTTCTTCCCACAGGAGGAAAAGGACCAGGCTACTCTCATGCTGCACGTGAGTAT-GTAGG--------GAGTGATCCCTGAGA-CCCCGGGGGAGTGTAGACAGGACCCCATGGGGAGGT----CACCCCCACAGCTGCTCCTTTAGTCTCACCTCCTGTGAGCTCTGACCACATCCTG--TTTATTCTCCTCTAGGCGATGACAGTGCCCAGGGCTCTGATGTGTCTCTGACAGCTCCTAGAGGTGAGACCCCAGAGACCCTGAAGTG--GGGAGGGTTGGG------------------GCCTTGGGGACCTGATGAGT--------------GCGAGGGGGACTGTTGAGAATGTCAGCACTTA-TGTGACTGACCTCAGTTTGTACTTGATTGTTTTTCAGTGTGAGACCAGCTGCCCTGTG-GGGACTGAGCGATGCAAGATGTGTTCACATCTCA-CGTGATGACATCAACAACC-CTGGCTTGTC--TCTGCAAACA---------GTGCCTGTGTCCCTAGGAGCATAATGTGAGGAGGTGGGGAGATTGGCCCACCC---TGCCCACCATGACC a score=1435 s hg19.chr6_ssto_hap7 1108441 32 + 4928567 GTTTTTGTTTTGTTTTTGTTTT----TTGAAGGaaa s canFam2.chr12 71500152 36 - 75515492 gcttttgtgttgcttttgtgttgcAGCTGAGGGAGA a score=55454 s hg19.chr6_ssto_hap7 1108473 873 + 4928567 atttatattattttaattatttttaCATACAGAAAACTCAACAGCATACATTTCACCCAATTTAGTGGCATGTTCTTTACCCTTTGCCTTTTTGAGCTTGGCAATGCAAACCACATACTTGAGACCCAGGACACTGTCTCCCCAGTGATGGCGGATCTCATCGTATCTGTCATTGTAATTGGTCCTGAGAACTCCCACCAGCTTAGCCAAAGCACCTTTGTCTTCCGAGTTAACCTGTGTGAAGGTGACAGTGGTGCAGGTCTTCCTATGGACTAGATGTCCCAGTCTTGCCTTCCCTTTGATAATGCAGTAAGGGA-CCCCATTTTATGACACAGGACAGGCAAGAAGACAACCAGCTTGATGGGATCTACATCATGTGCAATCACCACCAGCTGAGCTTTCTTGTTCTCCACCAAGGTGGCGATGGTGTTAACTCCTGCTCGAAGGACAGGTGGACTCTTAGTGGGGAATGTCCCCTTTGCCAGCAGCTTTCTTCTTGGCCCGGGCCAACAGCCTCTGCTTCTTCTCTTGGTTTGTCTCTGGTCTGTA-TTGTGGGCCAGCTTAAGCAGCAGAGTAGCTGTTTGGCTGTCTGGTGCCTGGGTGAACTGGTTAATCTCAGGAGGCACTTTCAGCCACTTATAGAGGA-TGGTTCTCTGCTGCTGCAACCTGATATAGCAGGGCCATTTCACAAAGTGGGTGAGGTCTCTTTTGGGCTGGATATCCTGTCCAGTGCCAAAATTCTTAGGCCTTTTCTCAAACAAGGGATTTACCACTTTCTTGGCCTCCTGCTTCTTCACGACAGCAGGGGCTGGAGCCACCTTCTTCTCCTTGGCCTTCTTTCCTTTTGGCATCTTGGATGGTGGGAGGAGAAAG s canFam2.chr27 17374249 866 + 48908698 ACT------ATTT--ATTACTTTTATGTCCAGAAAATTCAACAACATCCACTCAGCCCAGTTTGGTGGCCAGTTCTTTAGCCTTTGCTTTTTT-ACCTTGGCGATACAAGCCACCAACTTTGGACACCGGATGTTGCCTCCCCAGTGGCAGCAGATCTTATCATATCTGTCATTGTAATTGGTCCTGATGGATTTTACTAGCTTAGCCCGAGCTCCCTTGCCTTCAGAGTTAACCTGTGTGAAGGCTACAGTGGTATAGGTCTTTCTGTGGACCAGACACTCCAGCCTGGCCTTCCCCTTGATAATGCAGTAGGAAAACCCCATCTTATGACACAGGGCAGGCAGAAAGACAACCAGCTCAATGGGATCCACATCATGTGTGATCCTTACCAGCTGAGCCTTCTTGTTTTCCACCAAGGTGGTGACAGAGTTAACCCCAGCTCAAAGGACAAGTGGCCTTTTAGTGGGGA-CATCCCCTTTGCCCGCAGCTTTCTTCTCAGCCTGGGCCAACAATCTCTGCTTCTTCTCTTGCTTTGTCTCTGGTCTGTGCTTGTAGGCCAGCTTAAGCAGTTGAGTAGTTCTTTAGCGGTCTAAGGCCTGGGTGAACTGGTTAATTACAGGAGGCACTTTTAGATGTTTATAAGGGAATAGCTCTTTGCCACTGCAGCCGGATGTAGCATGGCCATTTGACAAATTGGGCGAGGTCCCTTTTGGGCTGGATGTCCTGCCCAATGCCAAAATTCTTGGGTCTCTTCCAGAACAGGGGATTGACCACCTTCTTGGCCTCCTGCTTCTTCACAACAGCAGGGGCCAGGGCCACCTTCTTCCCTTTTACCTTTTTTCCTTTTGGCATCTTGGATTGCTGGAGGAGAGAG a score=33977 s hg19.chr6_ssto_hap7 1117956 1380 + 4928567 GCTGTGCACTGCCCTGGTGGTCTCCTGTCCCAACCAGGTGTTGACCCAGGCCTTGCAGGCTCACGCGCTCTGGAAAAAAGAGAGAAACCAATAAATGCTCCCCTGGGTGCAGAGTGCTGCTTTTTATTCCCTGAGGAGTTCTCCCTCCTCAGTCACTCCCAAATCAGATTTACCCTTTCTCTGACGGAAGATGACGTCCCCACTTTTTTCTCCCTCCCATCGCACTTTTCCAGCCCCTGCCAGTCCCCTC-CCGTGACTCCATCAACATCAGCACCTG-CCCTGTGTCCACCATCCATTGTGCAGTG--AGTGAAAGGACCCAGGACTAAGGAACAAGACCCAGGAG--GAAACTCAGTGCCCTTTCCTCCTCCTCTCAAGCCTGACCAGCCCTGACACAGTGAGAGGCCTCCCCAAAGAGAGGCCCTGGCCCTGTCTCCATGTCCTTCCAGGTCTGGGCCAAGTCACACACAGT---CCTTCTCTTCCTGAGACCCCAGGCCCTCTTCACCTGCAGAGGCACCTGCATACCAGGGCAGGCCCTGCACGCTGTGGGTTCTGCCCTCCACCAGCAGCT-CACTGTTCCTCCCCTCCCAGCTCTGAGCAGACAGCTCCTAACTAGAGATCCTATCAGGAAGCCCTGGGGCTCAC-AGGCCCTGCATGGAAATATGTGGCTGCCATGGAGTCTGCACCTGACCTGATGCTGGGGACCCCCTTGCTCAAGGAGGCCCAGCCT--------GCCCTCCCCATAACC-------------TGCATTTGGGCTGTGCTTGCTCCTGCCTG-TCCACTCAACCCTGGAAATGCAGCTCCACCCCAGGGCTGCTGCTTGG-TGAGGCTGC-AAGCCCTTCCTGTCCCATTCCTAACAGGGATTCCACCCAGGCCACTGCCATCGCAGCTCACAGGGGATCT-------TCTTCGCCTG--TGGAGTAG-GGGGTTTCTTCAAACCCCTCATCCTGAGGCTGCCTCTACGCACCCTCTGCACCTGGGGATTGCCACTGCCACAGGCACTGTC-----TCCCACATGGA-CCCTCTGAGAAACGAA---GCCCCAAATTTGACTTCCTGTTCTATTCAACATCCTTTACAACATCAGTATTGGGGGAAATCCTATTAAGATTATCCAGCTGAAATTATGT-TGATGGACACCAATACTTAAAGCAGGAATTTTGAGAAACTAACATGTAATTTTCATGC-CTTTTTCTGGCCAATGTCCCAGTGACCTACGAGAAAACCTTTCCTGCCTACAGGGAACCAGAACTGACAATCCCTCTATAGGAGACACCGCAGGTGAGAGCAGGAGCAACCACAGACCTGCACTGCCCGT-GCTGTGGTTGCCTCCTGGACGGGGCCCTCTTGCTGCAGGGCAGGGGATGAACCGTCCCA-TCTGCCCAGGCCTGAGTG s canFam2.chr12 71543888 1369 - 75515492 GCTGGTTGCTGCCATCATGGCTTGTTGGTGCTACCTGGTGTTGATCCAGGTCTTGAAGGCTACCAAGATTTTGGGGAAA-AGAGAAACCCATAGAG--CCCAATTTGTGCAAAATATTGTTTTGCACTTGCTCAGAACTTCT------TCAGTTACTCCAAATTCAGCTCTGAC-TTTCTCTGAAGGAGGATAA-ACCCTTGCTGTTATCTCTCTCTCACC--CCTTTACCAGCCCTTGCTGCCCTCCCCACTGTGATGCC-TCAGCATCACTAGCTGGCCCTGCCTCCACCATCTACTGGACAGGAGCAGGAAAGGGTCCCAGGACCAAGGA-CAACACCCTGGAGCAGAAACTCAATGCCTT-----CTTGGTCCCAA--CTGTCCA---CTGACAGAGAACATGGCC---CCTGAGAGA---CATGTCCCTGTGGCC-TGTTCCTCCAGGCCAGACAGTGGTTACAAACACTGCTTCTTCTCTATCTG-----TCAGGCTCTC---ATTTGCATAAACACCTGAGCACAG----AGACCTCTCA-ACCACAAGCACTGACCTC-ACCTGCAGCTTCAGCCTCCTTCCTTCCCTAGCCCTAAGCCAGCAGCTCCTAACTGGAAGGCTCATCAGAGTGCTCAGGTGACCACCAGTCACAGTCTAGAAGAAGTGGACTACAGTGGGGTCTGTATTTGACCTGACTCAGGAGCACCCCATGCTCACAGAGGCCTGTCCTTGCCCTCCACCCTCACCCTGACCCAGGCGGCCAGGCTGCACTTGGCCTTCG-GTGCTCCTTCTTGGCCCACCTGCACCTGGAATCACAGCTCCTCCCCAAG--TGCAGCTTGGCTGAGGCTGCCAGGGCCTTCTGGCCCCAATCCTAGCAGGGA--CTAACCAGGC------------AATGCAAGGAGAACCTGTTGCAGTCTTCTTCTAAATGAGGTAGAGGGGGTTCTTGAGACCCC-AAGCCTGAGGCTA--TCTGTCCATCTTCTGAACCCTGAGACTGCCATTGCCACCACCTCTCTCCCACCTCCCACATGGAACCCTCCCAGACAAGAGCCCTCCCTCTGGTTGAATTCCTGATATATTTCACGCACTAAGCTAGCTCAGGATCTGAAGAAATCCTATTAAAATTCGTTTTCTGAAATAATTTGTTTTGGACATCACAATTTAAAGCAGGAATTT-GAGAAATTGACACATGACTTTTGTATTCTTTCTCCAGTAAATGCCTCAATGATATATGAGGCAATCATTTCTACCC-TAAGGAATCAAAACTGGTGTTCCCTCTGGGAGGGCCACCCCAGAGAACAACAGGAACATCTGCAGACCTGCATGGCTCTTTGCTCTAGTTGTGACCTGGTCTCAGCCC-CTCAGTGTGGGGCAGGGGACTAATCATCCCAGTCTGCCTAAGACCAAAGG a score=5301 s hg19.chr6_ssto_hap7 1119336 207 + 4928567 GCCAACTAACTGTGCAATTAGGTTCAAGGATGAGTCA-CCACCACCTCACTGGCCAGACACACGGAAGTGG-AGAAATGGCAGAAAGACTCGGGTTTCCTGGACACCCCAGACTCTCACTGTCCCCTGCACTGCCTCTGTCTTTGCAGAAACTCAAAACTTTCTGCTTGCTCTTTTCCTCTCCCCTCAAACAACCTGACTGTGGGGGAA s canFam2.chr12 71545443 207 - 75515492 GCCAGCTTATAAGTAGATTAGGTTCCAGAGTGAGAAATCCGATGCCTGCCATGATGGTCACCCAGCAGTGGTAGAATCAACTGAAGGACCCCAGGCCCC-ACACACCCCATTCTTTCCCTGTCCCATGCATCACCTTGTTTTTTGCCCAAACACAAAACTCCAT-CTTTCTGTTTTCACCTCCCCTCAACCAGCCTGATTACACAGAAA a score=13369 s hg19.chr6_ssto_hap7 1119543 470 + 4928567 ATGATTCTGACTGTCTCTTATTGTAAACTTACCAGGCAGCGACTACACTAAGAACAAAAACATTGGCTCAGGAAAGGCAAGGTGAGGCCACA-GAGCACAGA-ACAAAGCCCAAA---AAACAGCCCACTGGGTACTATGACCCTCGGGGGCTGGAAAAAGTAACACCTGGACATGGGATGAAAACAGGGACCACAGCTGCCCTGACAGAGGGCTGGTCCCCACTCCCCAAATAGCCCAGGGACATCTGCTTAT------------------CAACTGGTCCATATTATCTGCAAGGAAACACAGGGAGACA-GGGGCCATATGGTGGGAACCCAGAAAAAGCACGGTCTCGAGGGACCCAGAGGACGTGACACCCC-TGAGACAGCTCCCAGATGAGGCATATGGGGAGCTGCAAAGTGGACAGAGGATGGCCATGTGCACTCAGGAC---TCT---CCCTGTTA-----------CAAGGGGACCTCAAAGG----------------------GGCTGTACACATGGGGGC s canFam2.chr12 71545805 524 - 75515492 ATCATTCTGACCATCCCTTCCTCCAAATCTACAGGGCAGTGAGCAGCACAAGAAAGGGAAC--CGGCTCAGGGAGGGCAGAGTGAGGCCACAAGGGTACAGACAGAATGCCCTGCCCTAAGTAGTTTCTTAG--ACTGTG-CCCTGAGGGCCTGGACAGGACACATCAGGGAGGCAGGATAAAAGCAGTGGCCACAGCAGCCCTGAGAATGGACTGACCCTCTCTACCCAAATGATCAAGGGTTATCTGCTCACACCCCCAGAGTCTCCCTGAGACTCTTGCATATGATCCACAAGAAAACTCCAGGAAGCATGGGGGCATATGATGGGAACCAGGAAAGAGCACAGGTGGGAGTGACCCAGTGGA----ACAACTCGGGAGACAGGTCCTGGAGGAGCCATTCGAGGGGCTACAAAGTGGACCAAAGGTGACCATCTATGCTCAGGATGCATCTATGCCTTGTGAGTGGAACTTCCCAAGGGGACGTCACAGGCAGGACTCTGGCATGCTCTCCTGGCTGC-CACATGGGGCC a score=9010 s hg19.chr6_ssto_hap7 1120026 346 + 4928567 CTCGTGGGTCTTTTTCTTGATGTCCTCCTGATGGCTGGAGAAACAGGGGAGGGGGATGCAGAGAGGAAGGGACTAGAGGCACCACCTCTCCT-TGGATTCCTCTCCAGTTTCTAGC--CCTCCCTAGATCACATCTG---CCTTTACTATTTGCTCC-CTCTGAGATAGTGATCATCCAGGCCCTCAGCAATCAGCACGCAATTCCCA-ACTCACCCACCTGGATGCGA--CCTGGTAAGCCTGAG---AGACAGAGACCGGGATGGGGACAAAGCAGGCACCACGGCCCTCCCTGCTGCCCACTCCTCACCTGCAGCAGGAGGAGGCCACAGCTGGATGTTCGAGGGCCTTGG---CCCAG s canFam2.chr12 71546562 352 - 75515492 cCTGTGAGTCCTTTTCTTTGATTCCTCATGATGGCCGAAGATATTGGAACAGG---TGTGGACAGGAAGGAAATAGAATCATTACTTCTGGTCTGGATTCTTGCCCAGTGTTAAACTTCCCCACTAGGTC----TTGGACCCTTTACTGCTTGTGCCTCTCTGGTCCCACGATCACCTGGGCCCTCCCCAGTCAACACATGGTCCCCACACATTACCTCCAGACAGAGAGTCCTGCCGAGCCTGAGAGTAGAGAGAGGTAGGGACAAACTCAGAGCAGGGAGCCC--CAGTCCCTACTGCCCAATCCTCACCCAGAGCAAGGAGAGGCCACA-CTCACCACTCAAGGGCCCTGGGGACCCAG a score=1201 s hg19.chr6_ssto_hap7 1127264 36 + 4928567 AAACTTTTAGTCATTAATTTAAAAAGTGAAGCTTAt s canFam2.chr12 3982339 36 + 75515492 aaacttctcattgttactttccaaagagaaatttga a score=7264 s hg19.chr6_ssto_hap7 1128879 157 + 4928567 ATAATTAGATAAAAGAAGTCTTTGATTTACAAAATCCTGAAACAATA----GTTTTAATTTtgcttttaacatatacgtaagtcctttagta-cagctctcttt--cagaggtgcagcttaat-tccctctcttaagtgtgg-cttggacttaatgatgcacttct s canFam2.chr12 3982389 166 + 75515492 ataattgggtgaaagaagcatttgatttacaaaattctgaaataatatttagttTTGATTTtggttttaacaggttcacaaattctttgacaacaatcctcctttccagagatggatcttaatgtcctcctcctgagcatggacttgcactgaatgattcacttct a score=19559 s hg19.chr6_ssto_hap7 1129650 501 + 4928567 aactgatagagtaatgctgacataacagtttgtgactctgggtgtag-aatgtgaaactcactatggcttccacct-------------------------tctctctctctgtctctgg----------------gatcatgagctcttggggacccagctgctgtgccataagcagccctgcaggaaggtccatgtggctaagaactgaggtcccctgggaccagacagcaaggaactagg--cttttcc-------------------aacagccatgtgactaagccatgtttcatgtgaatcc-tcagccccagtgaagccctcagacgatgcagccctaggctgacaac---------------tggactgcaaccttgtgagaggccctgagccagaagcactcaggaa--aaccgctcccggattcctgaccattagaaactgtgggagatgatgaatatttgctgttttgagctgctaagttttacataatttgttacacaatagtaaataactaatacaT-TTTCACAAGAGAGGATGTATTATTACACGTTAATTTGCATTTGCTCTAAATT s canFam2.chr12 3982555 581 + 75515492 aactgatagaa-aaggctgatgtgatggtgtgtgacccaggacctaggaacataaaacacattgcagcttctacctggctttttctctctctttttgtctgtctgtctctctgtttctgtatctgtctctgtctctggttacttgcactgggggaagaagctacctagttattagctacctaatggaaaagtccacacagctaggaactgaggccccttgggaccatctgggaaggaaatgaggcctcttcctcatttcctcatttccctcaacagccatgtgagggagccttatgtcctaggaatccctcagccccagtcaagccatcagatgatgcagtcct-gtctgacaacccagtcctgtctgacttgactgcaacccagagagaggccctgagacagaagcactcaggtataagcctctcctggattcctgaccctgggaaactgtgggacacaatatatatttgttgttctgagctgctatgctgtggataatttgttaggcaccagtacataactattataGAgtccaaagaagagaatgaagtattgcactttaatttcgattggctctaaatt a score=10273 s hg19.chr6_ssto_hap7 1130462 298 + 4928567 aactataagatattaaacat-gtaacttagttttaaaaggaaaggagaagttccacggct----gaagaggatgtattttattactattcataatgatcactttacttgaacttcagtttccaactgtgtccaaattaaacacaaaaggaagaTCCAGCCCTTCCTGGGCTGattctatcatggctcccaacaaccagctcctggtcattcaccttcccccagttattcaaccaa-ctctaatgtaggtgctgctgtgaagggatttagcagatataattaagggcctcaattagttgacttta s canFam2.chr12 3983136 299 + 75515492 aactat--gatattaaacatcatctattggttttaagatttaagaagaatatctatgtctaagggaacagaatgcatattattaccattcacaacaatctatttatttggagtttgatttctgacggtaaaccaattaaaca--aaaggaagaagcaggctGTCCtaggcagatgctaagatggcctgccataactaacctctggttattcatattcttccagttgttggatcaaacactaatccaggtgctagcgtgaaaggactttgcatatgcagtgaaggttc-agatcagctgcattta a score=7088 s hg19.chr6_ssto_hap7 1130768 367 + 4928567 ttatcctgcttgg-actgtcctaataaggagagtccttgaaaggactgggttcttcctgagcatagagattcacagtgtgagagggattcagcataggggtttcctccactgtgggctttgaaaatgaaggggctgtgtaggaaagaacgctggtgggcaccatgcattaagtgcagccctccctgttctctacagtgacagccagtgaggaa-cagggacctcagtcttacaactgccagaaactgcattctgccacc---tctgtataagcctgaaggaggat-------tcaaaatgaaaacacaggtttaggaagaccggaacagagattccatccacatcatgcccagatttctgat-taagaaactataaacaa s canFam2.chr12 3983703 354 + 75515492 ttatcccaagtagtcctgacctaatcaggtgagcccttaatagcacagggtgcttcctgagtgaagggactggaagagtgagcaggattcattgtgag------------tggaggctttatgatggaaggggctcc-cggcaagcaatgctggtggccac-aggagctaagaacagcatccc-----------actgacagcgtgccaggaagtggagactgccgacctccaactacaagaactggaattctgctaacagatctgtacaagcttgtagggggacctcaagctctagttgcaaacac-tgtctgtgacatgctgaggagaagacccctcagcatcactcctggactgctgacctacagaactgtgcacat a score=23810 s hg19.chr6_ssto_hap7 1131452 864 + 4928567 ataaatgggtgctgtttaaagcca--atgtttgtgac-aatttgttacccagtcttataaaattcatacaCAGACTCAAAAGAC---------TCctgg-------aatgaactgatgaattgatacgcacactagttacataaaataaaatcttttttaactttttcagtgttttacattttataattttct-gtgatgcaatttaaT----ACACTCATAATTCATTCATTCAGCCAAGAAAAAATAATTTAGTCCCTACAATGAACCAGGTATGCCCTCATATGCTCAAG-----------------------------------------TGCCTGACATTCTAGAAGCTTCACAAgaatgaggtggagccactggagtgttttaggtggagaaatgacacactctgactcatagtagcaggaccacta-------tagAGAGAACACTCATG--TAGCAGGTCATGGAACAGTGCTAGAGCCACAATTCAGGAGTGAGAGGGTGGTGGGGATTAAGGGGAGAAGAGGGCCTGAGGGATGAGAGGGACGGAGGGAAGGGCTGGAGGAGCAGGAGGTGAGGAAAAGGAGCAGAGG-AAAGAATTCCAAAGCAGCGGAACTCTTAGGT-TTAAACACATTGTTTTATAGA--TTTTATTACATCCATCTACAGAGCCTCGCTGGGTGTTCTTTGCAGTTGGCCTTTAATATCTTATGTGGGTCTGCCTAGAAACTAATTG-TTTTTTATGTTAATCAGGTTTAAAAAATA--CTAAGTATTCCTAAAAAATATACACTCCACTCACATGTGGATAC---TTCCTAAAAACAGGCAGTGCATGAGCACTAGTGAGGGGCATTGTGACTGCACTGAACACTTACAACTGTGAGGTGAATAAAGTTTGTGCTGGCTCCTGGTTGCAACATATAGTAACATAGTGTGGTA s canFam2.chr12 3984057 916 + 75515492 acacatgggtgtggttgtaagtcactatgtttgtggttaatttgttatgcagcaatagaaaaccaccacaTAGCCTCAATGCACATCACATTTTCCCAGTGGAATGAATGAATGTATGAATCGTCGTGCACACTAGTTGCATGAAATAAAATCTC-----ATTTTTCATGTATTTTCCATTTTGTGATTTTTAAGTGATGGGATTAAAATCTAATAGTCATATTTCattcattcattcaacaacaattaatttagtgcctactctgcaccaagaatggctttctacactaggggtacagctttcctcaaagtagcccaaagcacctgtgcttcatgctttacattctagaggCTTCCTAAAagtgagatggagcccctggagcattttcagtgatgaaatgacacattctgactcacattagcaggatcactgaccccagtggagagagtggccctgggtggcaggtgttggggtggcagcagggt-gcaat-caggagAGCG-----GGTGGAGACTAAGGGGATGAGAAGGCATGAGGGCTGAGAGAGATGGAGAGAAGGGCTGCAGATGCAGGTG--GAGGGAGAGAAGCAGTGGTAAAGAATTCTAAAGTAGTGGAATTTGAATACATTGAATACATTGTTATATCAATTTTTTATTTAATCTCTAT-TAGGTCTTAGCAAGATATTGTTTGCATCTAATATTTACTGCACTCTGTGGA-----CTGAATACCTGTGGCCTCCTTATGTT-ATCAGGGTTAAGAAGTAACCTAGATGCCACTAATACCCAAATA---AAATCGTCCTTAGGTGCTCATTCATACACACAGGCAACAC-TGAATGCTGATGACGGGCATTTGGACTGCCCTGAATACTTGCAACTATGAGGTGATTAATGGTTGGAC---ACTCTGATTGAAATGTACtatatta----atgata a score=11194 s hg19.chr6_ssto_hap7 1132316 417 + 4928567 CTTTGTCTTGAGGAGATGTCCTGGACTCACA--CGGAAACTTAGGGCTACGGAATGAAGGTAAATTTAAAATAAAACAAGCGGGAGTCACAGATACATTGTCTGGGAAAGTGAAACTTAAGAGCTTTGTGAGTCCTGTTGTAAGGCT-TTTAGATGCATTTATATACCAACGGGCCAAAGTCACATTTTTTACCTATTAGATTCCTGATCATTCAGGGGTTACCAAGATTATGCTACCCACTATAGTTAATAAACAAAAAGCAAACTGGTCTCTAT-------TCTATCTCATGCACTCAGGCACAACTTTTCCAGATTTAAGGGGGAAAAAAAACCCTGTCTTTACACCTACAATCCCAGGGCGAGCTCACTCTCTGGCACCAAGCTCCGTGGG-GTGATTTTTCTTCTAGAAGAGTACAGGAGGAC s canFam2.chr12 3985518 384 + 75515492 CTTTGTATTGAGGCTATGTCTGGAATTCACAGACGGA--------GCTATGGAACAGAGGTCATTTTAAAGCACAAAAACTTAAAGTCTTGGCT--------TGGGAAAGTGAAAAT-GACAGCTTTGG-----TTATTTCAAAGCTGTTTAGGCAAATTTATACAGAAA--GGATAAAATCACTACTTTGACACATGCGAGTCCCGATCTCTCAGGGGTTGTCAAGATTATG------------GTTAAGAAACAAGAAGAAAACTGGCCTCTGTGAAAATCTCTAGCTAGTGC-CCCAAGCACACCTGCCTCAGGTACAG-------AAGACACCTTGTTCCTTCACCAATTGTCCCACAGTCAGCTCTCTCTCTGGCATCAAATTCCCTGAGAGTAAGTTTCCTTCTCAGACAGTCCAGGGGGAC a score=1138 s hg19.chr6_ssto_hap7 1132733 104 + 4928567 AGGCAAG----------------------GAGTGGG----------------AGGCAGGGAGTCCAGTTCAGGGACAGGGATTCCGGGATGAAAAGTGAAGGGAGAGGGACAGGGACCTTGCCGAGGGTTTCTCCCTGGTTT s canFam2.chr12 3986231 138 + 75515492 AGGCAAGTAAGTAAGCAAGTCAGTCGGTGGAGGGGGTGTGGTGAGGGGTTCAAGGCAGAGACTCAAGCTCAGCAA-GGGGTCTCCGGGAAGGAAGAC--AGGAAAAATGGCTGAG-CCCAGTCTGGTGTCTTCACTTGGTTT a score=128465 s hg19.chr6_ssto_hap7 1132837 3517 + 4928567 CTCAGACAGCTCCTGGGCCAAGACTCAGGGAGACACTGAGACA-GAACGCTTGGCACAAGAGTAGCGGGGTCAGGGCGAAGTCCCAGGGCCTCAAGCGTGGCTCTCAGGGTCTCAGGCCCCACAGGCGGTGTATGGATTGGGGAGGCCCCGCGTTGGGGATTCTCTCCTCC----------------TTCTCCTAACCTGTGTCGGGTCCTTCTTCCTGGATACTCACCGGGCGGCCCCAGTTCTCACTCCCATTAGGTGACAGGTTTTTAGAGAAGCCAATCAGCGTCGCCGCGGTCCTGGTTCTAAAGTCCTCGCTC-ACCCACCCGGACTCA--TTCTCCCCAGACGCCAAGGATGGTGGTCATGGCACCCCGAACCCTCTTCCTGCTACTCTCGGGGGCCCTGACCCTGACCGAGACCTGGGCGGGTGAGTGCGGGGTCAGGAGGGAAACGGCCCCTGCGCGGAGGAGGGAggggccgg-----------------------------------------cccggcgggggcgc-------aggacccggcagccgcgccgggAGGAGGGTCGGGCGGG-TCTCAACCTCTCCTCGCCCCC--AGGCTCCCACTCCATGAGGTATTTCAGCGCCGCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCCATGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACTCGGCTTGTCCGAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCAGAGTATTGGGAAGAGGAGACACGGAACACCAAGGCCCACGCACAGACTGACAGAATGAACCTGCAGACCCTGCGCGGCTACTACAACCAGAGCGAGGCCAGTGAGTAACCCCGGCCCAGGGCGCAGATCACGACCCCCCACCTCCATGCCCCACGGACGCCCCGGGTACTCCCGAGTCTCCGGGTCTGGGATCCACCCCGAGGCCGCGGGACCCGCCC------AGACCCTC-TACCTGGGAGAACCCCAGGCGCCTTTACCAAAA----TCCCTGCGG------------------GTGGGTCCGGG-------------------CGAGGGCGAGGCTCGGTG------GGCGGGGCTGACCGAAGGGGTGGGGCCAGGTTCTCATACCCTCCAGTGGATGATTGGCTGCGACCTGGGGTCCGACGGACGCCTCCTCCGCGGGTATGAACAGTATGCCTACGATGGCAAGGATTACCTCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCAGCGGACACTGCGGCTCAGATCTCCAAGCGCAAGTGTGAGGCGGCCAATGTGGCTGAACAAAGGAGAGCCTACCTGGAGGGCACGTGCGTGGAGTGGCTCCACAGATACCTGGAGAACGGGAAGGAGATGCTGCAGCGCGCGGGTACCAGGGGCAGTGGGGCGCCTCCCTGATCTCCTGTAGACCTCCCAGCCTGGCCTAGCACAAGGAGAGGAGGAAAATGGGACCAACACCAGAATATCGCCCTCCCTCTGGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTACCAGAGAGTGATTCTGAGGGCCCGTCCTGCTCTCTGGGACAATTAAGGGATGAAGTCTCTGAGGGAGTGGAGGGGAAGACAATCCCTGGAGGACTGATCAGGGGTTCCCTTTGACCCCACAGCAGCCTTGGCACCAGGACTTTTCCCCTCAGGCCTTGTTCTCTGCCTCACACTCAATGTGTGTGGGAGTCTGACTCCAGCTCCTCTGAGTCCCTTGGCCTCCACTCAGGTCAGAACCAGAGGT-------------------------------CCCTGCTCCCCCGCTCAGAGACTAGAACTTTCCAAGGAATAGGAGATTATCCCAGGTGCCCGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCCC-CACCCCAGGTATCTGGTTCATTCTTAGGATGGTCACATCCAGGTGCTGCTGGAGTGTCCCATG-AGAGATGCAAAGTGCTTGAGTTTTCTGACTCTTCCTT-TCAGACCCCCCCAAGACACACGTGACCCACCACCCTGTCTTTGACTATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCATACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACGTGGAGCTCGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCCATGTGCAGCATGAGGGGCTGCCGGAGCCCCTCATGCTGAGATGGAGTAAGGAGGGAGATGGAGGCATCATGTCTGTTAGGGAAAGCAGGAGCCTCTCTGAAGACCTTTAACAGGGTCGGTGGTGAGGCCTGGGGGTCAGAGACCCTCACCTTCACCTCCTTTCCCAGAGCAGTCTTCCCTGCCCACCATCCCCATCATGGGTATCGTTGCTGGCCTGGTTGTCCTTGCAGCTGTAGTCACTGGAGCTGCGGTCGCTGCTGTGCTGTGGAGGAAGAAGAGCTCAGGTAAGGAAGGGGTGACAAGTGGGGTCTGAGTTTTCTTGTCCCACTGGGGGTTTCAAGCCCCAGGTAGAAGTGCGCCCTGCCTGGTTACTGGGAAGCACCATCCACACTCATGGGCCTACCCAGCCTGGGCCCTGTGTGCCAGCACCTTCTCTTTTGTAAAGCACCTGTGACAATGAAGGACAGATTTATCACCTTGATGATTGTAGTGATGGGGACCTGATCCTAGTAATCACAGGTCAGG--GGAAGGTCCCTGGCTAAGGACAGACCT-TAGGAGGGCAGTTGGTCGAG-GACCCACATCTGCTTTCCTTGTTTTTCCTGATCCCGCCCTGAGTCTGCAGTCACACATTTCTGGAAACTTCTCGAGGGTCCAAGACTAGGAGGTTCCTCTAGGACCTCATGGCCCTGCCACCTTTCTGGCCTCTCACAGGACATTTTCTTCCCACAGATTGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATCCCTGAGATCCTTGGGATCTTGTGTTTGGGAGCCCATGGGGGAGCTCACCCACCCCACAATTCCTCCTCTGGCCACATCTCCTGTGGTCTCTGACCAGGTGCTGTTTTTGTTCTACTCTAGGCAGTGACAGTGCCCAGGGCTCTAATGTGTCTCTCACGGCTTGTAAATGTGACACCCCGGGGGGCCTGATGTGTGTGGGTTGTTGAGGGGAACAGTGGACATAGCTGTGCTATGAGGTTTCTTTGACTTGAATGTATTGAGCATGTGATGGGCTGTTTAAAGTGTCACCCCTCACTGTGACTGATATGAATTTGTTCATGAATATTTTTCTGTAGTGTGAAA-CAGCTGCCCTGTGTGGGACTGAGTG--GCAAGATTTGTTCATGCCTTCCCTTTGTGACTTCAAGAACCCTGACTTCTCTTT----------------------------------------CTGCAGAGACCAGCCCACCCCTGTGCCCACCATGACCCTCTTCCTCATGCTGAACTGCATTC-CTTCCCCAATCACCTTTCCTGTTC--CAGAAAAGGGGCTGGGATGTCTCCGTCTCTGTCTCAAATTTGTGGTGCACTGAGCT--ATAACTTACTTCTGTATT-AAAATTAGAATC s canFam2.chr12 3936149 3559 + 75515492 CTCACACAGCTCCCTGACCAGGACTCAGGGAGTCAGAGTGACAAGAGCGCTGTG-------------------GGGCAAGGTCTCAGGACCCCGGGC-TGCCTCTCAGGCTCTCATGCCCCA-GGGCGG-GTCCGGGGCGGGGACGCTCAGGCTCGGGAGTCCCCACCTCCCCGGGGATTTCACTTCTTCTCCCAACCTGGCTCTGGGCCCCCTGCCTGGAGACTCATGACGCAGCCCCAGCGCGCACTCCCATTGGGTGCAGCCTTTCTGGAGGAGCCAATCAGCGGCACCGGGTCCCGGGCTCTGAAGTCCACACCAGAACCGCCAGGACGCAGCTGCTCCACCGACCCTAAAGGTCTGGGCTATGGTGCCCGGAACCCTAGCCCTGCTGCTGTCGGGGGCCCTGGCCGTGACCCTGACCCGGGCGGGTGAGTGCGGG--CGGGAGCGAGGGGACCGGCGGGCGGGGACGCGGGACCCCGGGAAGccgcctctccgccgcccccggcccctcccgcctccgccccgccccgggcatctcccctgggccccgggccccgcGGCGGGAGG-GGGTCGGGCGGGGTCTCAGCC----CTCGGCTCCGCAGGCTCCCACTCCCTGAGGTATTTCTACACCTCCGTGTCCCGGCCCGGCCGCGGGGACCCCCGCTTCATCGCCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCGGCCACTGGGAGGATGGAGCCGCGGGCGCGGTGGATGGAGCAGGAGGGGCCGGAGTATTGGGACCGGCAGACGCGGACCATCAAGGAGACCGCACGGACTTTCCGAGTGGACCTGGACACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTGAGCGGCGCGGGCCCGGGGC-CAGGGCACGACCCCC---------ATCCCCCCGACCGGCCGGGTCGCCCCGAGGGTCCGGGTCCGGGCGTCACCCCGAGTCCGAGGCCCCCCACCCTAAACGGGTCCTCAGAGCCAGGAAGAGGCCGTGCGCCCTTTCGAGCGGTTTTCCTTTCGGTTTGAACTTAGAAGTCTTGCGGTCCCGGGACTACTCGGGTGTTCACCGCGGGGCGGGGCCTCGGGGCCTCGGGGCGGAGCTGACCGCGGGGG-GGGGCCAGGGTCTCACACCTTCCAGTGGATGTTTGGCTGTGACCTGGGGCCCGGCGGGCGCCTCCTCCGCGGGTACAGTCAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACGCGGCGGCGCTGATCACCCGGCGCAAGAGGGAGGCGGCAGGTGATGCAGGGCACCTGAGGAACTACCTGGAGACGACGTGCGTGGAGTGGCTGCGGAGGTACCTGGAGATGGGGAAGGAGACGCTGCTGCGCGCAGGTACC-GGGGCCCCGGG---CCTCCCCGATCTCGCCT---CCACTAGGGAGGGCTTCCCACCAGGAAGGGA---ATATGGACTCAGGGTCAGAACACGGCCCCTCCCACGGG--TGGGGACAGGGGATCCGCCTGGGTGTTGATAGTCC-TACTAGGGTGACTCACCCAGAGGCCGCTTTTCTCGA-AGGACAATGGAGCAATCCAGGGTCTCCGGGAG-GCAGGTGGAGGCCATCCTGAGATAACCG-CCAGTGGTGCCCTTTGACCTGGCAGCTGGGTGGGAACCATGACTTTCCCTC-AAGGCCTTCTTCAATGAA--------AACATATTTGGAGCTTGAACTGGGAGTTTTCTGACTCCTTCAGCCTCCACCACGGTCAGGACCATTAGTGTGCTCTCCACCTTAGACCTGCAGCCTCCTACCCTGGACTCTCTCCCTGATTCTAGAA-TTTCTAAAGATTAGGA---CATCCCAAAGGCT-------AGGTTGGTGACTGGGCTTTGTGCTTCTTCCAAGTGAACCAACTGCCCTGTCCACCCT-AGGATGGTCACA--CAAATGCAGTCTCAGTGGACCACGCAGTTAACCAAAGTG--TGGGTTTTCCAATTCTTCCTTCTCAGAACCCCCCAGCACACGTGTGACCCGCCACCCCGTCTCTGACCATGAGGTCACCCTGAGGTGCTGGGCGCTGGGCTTCTACCCTGCGGAGATCACCCTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACAGAGGTTGTGGACACAAGGCCTGCAGGAGATGGGACCTTCCAGAAGTGGGCGGCCGTGGTGGTGCCCTCTGGACAGGAGCAGAGATACACGTGCCACGTGCAGCATGAGGGGCTGGCGGAGCCTGTCACGCGGAGATGGGGTAAGGAGGGC-CTCGGGGTAGAGCTTCTACTCAGGGCAAGTGGAGCTCTTCTGGAGAATTTCAGCAGAGTCAGGTCTCAAGCCAGAGGCT---GGACCCTCATCCTCCCTCCCCTTTCCAGAGCCTTCCCCTCTGTCCACCATTGTCATCGTCAGCATTGCTGCT---CTGGTTCTCCT------CGTGGTCGCTGGG---GTGATTGGAGCTGTGATCTGGAGGAAGCAGCGCTCAGGTAGGGAACCGACTGAATAC----TCTGTGTTTTCCTGTCCTGTTGGGGGGTT----TCCTAGGGAGCACGCTGTCCTGCCTTGTTAACGGGAAGTACCGTCCATATGCGGTTACTCTCCTACACTGGA-GCTGTGTACTCACACTCACTGTGCAGCAAA-CACTTGGGAAAATGAAGGCCAGAGTT-TTGCCTTGGTGATTCTGGTGACGGGGACTGATTCCCAGCCGTCACAGGACAGAGCGGAAGGCCCCT-GCTGAGGACAGACCTCCAGCAAGTCAGGTGGTCCAGTGACCCCTCACCTCATGGCTTG--TCTCCTGACCCTGACCTGGGCGGTCAGTCAGAA--TTCTGCAGAC-TCACTCTGCACCAGGACTGGGAGCTTCCTCGAGGATCTCCTGGCCCAGCCCTGTGCCCGGCCTCTCACATGATGTTTTCTTCCCACAGGAGGAAAAGGACCAGGCTACTCTCATGCTGCACGTGAGTATGTAGGGAG-TGATCCCTGAGA-CCCCGGGGGAGTGTAGACAGGACCCCAT-GGGGAGGTCAC---CCCCACAGCTGCTCCTTTAGTCTCACCTCCTGTGAGCTCTGACCACATCCTG--TTTATTCTCCTCTAGGCGATGACAGTGCCCAGGGCTCTGATGTGTCTCTGACAGCTCCTAGAGGTGAGACCCCAGAGACCCTGAAGTGGGGAGGGT-------------------------------TGGGGCCTTGGGGACCTGA------TGAGTGCGAGGGGGACTGTTGAGAATGTCAGCACTTA-TGTGACTGACCTCAGTTTGTACTTGATTGTTTTTC---AGTGTGAGACCAGCTGCCCTGTG-GGGACTGAGCGATGCAAGATGTGTTCACATC-TCACGTGATGACATCAACAACCCTGGCTTGTCTCTGCAAACAGTGCCTGTGTCCCTAGGAGCATAATGTGAGGAGGTGGGGAGATTGGCCCACCC---TGCCCACCATGA-CCTGTCCCTAAT-CTGATGTGCGCTCTCTTCTCTGATGTGCTTTCCTGTCCAGCAGAGGGAGGGCTGGACCATCTCCATCCCTGTCTTTGTTTCATGTTGGGCTGAGTGTAGTGCCTTACTTTTCTATTCAAAATGAGAATC a score=1970 s hg19.chr6_ssto_hap7 1136354 96 + 4928567 TGAGTATAAATTTAGTTTTTCAAATTATTTCCAAGAGAGATTGATGGGTTAATTAAAGGAGAAGATTCCTGAAATTTG------AGAGACA-AAATAAATGGA s canFam2.chr12 3939872 92 + 75515492 TGAGAATCCAGATATATTTTCTAATTCATGGCACGTGAGGCTGATGAAGTAATAAAAG-----------TGAAATTTGTAAGGTTGAGACAGAAATgaatgga a score=4375 s hg19.chr6_ssto_hap7 1136450 148 + 4928567 AGACATGAGAACTTTCCACAGTACACGTGTTTCTTGTGCTGA-TTTGTTG---------------------CAGGAGAGGAGAGTAGATGGGG-CTGCGCCCAGTGGGTGCTCAGGCCACCATGAACTTTATGTGGTCACTGCTCAGCTGGGTCATCTTTGCTGCTCCATT s canFam2.chr12 3990176 160 + 75515492 AGCCCTGAGAACCTTCCAGAACTCTCATGTTTGCTGTGTTGAGTCTGTTGAAGTTGGGGGCTGAAAGGTGTCAGGAGCCGAGGGGGGATGGGGCCTGTGCCCAGTAGGTGCTCAGTGCATCCTGG-----GTGTG----CCCCTCAGCTGGGTCATCTCT-CTGCTCCG-T a score=3992 s hg19.chr6_ssto_hap7 1136598 174 + 4928567 GTCCTTGGCCCTTCAGTAGAACCTTGTCCCACCAGGACCTGTGATCACATAGACTTGGATATCACCT------AGGGTGGTCCCTACACTTAGAAGTTCCTGTG-----------TTATCAGAAGAAAAATTTTCAGACC---------------CCTACACCTCTTCCCCTCCTTCCAGGTCTCTTTCAATTGTATTTTCCATCt s canFam2.chr12 3991272 192 + 75515492 GTCCTTGCCCCTTCTATAGAAGCTTGTCTCACCAGGACCTGTGATCACAGGGACTTGGACGTCACCTGTCACCAGGAC--CTTCTGTAGCCAGAGCTTCCTGAGACTGGGTCAGCCTGCTAGA---------CTCAGGTCTGGGTCACAGCATAGCCCCCAttttgtttcttcctttt---tttctttcttttttttttttttttt a score=4393 s hg19.chr6_ssto_hap7 1137106 593 + 4928567 ACTTCCCGAGA---GGAGAGGT----------------------------------CCCAGAGTTTTTC---ATTGTAGTTTACTTTCT------------------GTTGGAACTCCTC----------------------TTCTGCTCTCTCTCCTACTCT------TCTTCCTGCCCTGAGTTGTAGTAATCCTATTGCTGGCTCCAAACCAAACTCATGGATTTGTAAAGCAGAGTCTAATTTAGATTCATATGTGGTTGGATAATTGGAGCCA-TAAGCCTTGGGTTATCTTTCCTGAAGAGACAAATATGGTTGTGTGCTGCAGTGTGCAGGAGGATTGGTGTGGGAGGAGG----GAGGGAGGGAGGACACAAAAGCAGCCCTGGTGAGAAAAGCACTGGTGCATTTATATCCACATGAGATAATATTGTTCCACAGCGGCTACAAAATGACATTTGGCCTGAGTCTACATTAATAAAGATATTGCCTTTAGAATAGGGGGGCGCACTACAGTAATCATCCATTCAAGTGGCATTTGTTGTCTGTTAGGTATTTG--ACTGTTTTTGCATTTAGAAAACATCGTTAAAGTAAAAACAGAAAAATTT-CTGGCCTTGTCGTGTATACATTCTAGATGcaagcttgtccaacctgcagatctcggga---tgcatgtggcccagg s canFam2.chr12 71621346 614 - 75515492 AGTCCCCGAGGTTTGGAGAGATGAACTTCCAGATCCATCCAGTCTCCCCCTCCCTCCCCAGCTGCTTTCTGGATTATTGTTCACATCCTGAGGTAGAGAGGGGAGAAGTCAGAGGTTCTCCTCCTCATAAGCGTCCAGGAGTTTCTGCCTCCCCTGCTGCTCTGCCCTCCCTCCCCGCCCTGGGCC-CCGTGATCCCTGTG---------------------GGATTTATAAAGCAGAGTGTAACGTAGATTTCTCTGTGGCTGGAGAAGAGGACCCAGGAAGCCCAAGGGCACGGTGCCTGAGGAGTGAACTCTG--TGCGTGGT---GTGTGCAGGAGAAACGGTGTGGGGGTGGGAGCTGAGGGAGGGAGG---TGGGGGCAGCCCC-ATGAGGAGAGAGAGGGGGCACTGATGACCA-GTG-GCTGGTGGGGGGCAGGAGCTGCCACAGAACAGC-TGTGCCCCAGG-------------------CGCTTCTAGAAGAGGGAGACCCTCTTCC-TGCGCATTCATTC-AGCTGTAACTGTCCTGTGTCACATGCAGGACACACTGTTTGCATCTGAGCAGCTCAGTGAGACTCAGGTGAGGCAAACCTGCTGGTCTCCTGGAGAGTATGTTCTAG---------------------TGGTCGGGGGAGACTACACCTGACCCAGG a score=15100 s hg19.chr6_ssto_hap7 1137902 798 + 4928567 AGTATAAGCAGAGTAGGAACAGAAAATGCTTGAGTTAGAAGGTGGCAAGTGCTGTGTGGCAGGTGATCCAGagggtg--ggctgtgggtacaggga-ggtggctgttgtgctgggtggtcagcatgggccttgttgcaaatgtgaccttggagtaaagatttgagggatgtgaggagttgtctacacggatgtct-cagaaagttcttttcaggcagggaaaccttcagtgcagatgcactagggcaggaaattgt-ctgtgttcctggaaggaggaagaggccagaagtgtt-gaacagagagaaa----ctgaaatgaagtcagaggtgtgcccagagcaggttgccctggagggtgtgg------gaaggatgttgacctttgctctgaatgacatggggagttagaggacagttttggaaagtgggacatggtaggacttatcctttgaaagcttctct-ctggctgctg--tgctgagaacagaattgagaggtggggg------actagtgaggcagtggggaaaacggtgggaaaggagtgcagtattccaggatggagac-gtcgcttaccttgactggggtgtgagcaggggaaatagtgggaagtgatgggattctggat-------------gaattcacagcacttgctaatggattta-tctgtggtgtgagaaagaagaatcaagga---cacccacagtattggactgagtgagcagaagggtggagctgctgtcagtggagatg-gggagactctggcaggagcaTACAGAGGAGAGGGCATTGCAGGCATCCAGT---GGAGGTGACAT-----CTACGAGGAATGAAGGTGA s canFam2.chr12 3992545 781 + 75515492 tgtgtAAGCACAGTAAGTAAGGGAGGTGTAGACATTGGAAGTAGGTAGGAGCT-TGAGGAAGGTGACCCAGAGAGAACCTGCTCtagg-acagggacggtggccaccttactgcagggattgggggagcctccctgagaaggtgacctgggag---agattggaggac----atgaattgtgtaggaggatgtctgggggaagttctttccaggcagggaa--cctccatgctcaagctccagggcaggagcctgtcccatgtttgagggagggtgaggaggcccctggggctggagcagagagcaaggggatgacatgacatca--------------------cgtcatggagcctgaggacagtagaagggttttgagtttt-ctctgagtgagatgtggagttataaga-------------------atgaacagatcaattcattgaa--tttctttaccagcacctgtttgctgcgtgcagaattgagaggtgaaggggagcaactagt---------agggaacctgtaggacc-cagggcagtgtcccaggagggggatgggggctgaacat--ctggaatgtggggagggaagataataggaaatgagtgggtgctggatatgtttacaggtgaattttgcagcatttcctaaggcattccttctggggggtgagagggagggatcaaggagggcatccggtatttcagact--gcaaggagaagtgtgcag-tgccttccatggagatgaaggagacactggaatcaggacattgggaagc-agcatcacagacatccacttaggaatgtggaatctgggctataagaaatgcagctga a score=10666 s hg19.chr6_ssto_hap7 1154957 456 + 4928567 Tgatggatgtggtgacgtcgcgttctcccgggcggggccggaggc------ggtacagatgagggacacattcatggctaacg--------ggacggcttttctcgttctgcgttccgcttgcggccggtagtctctcctccccgcccatgggcggtggttggaggcaggggtgcggAATCCGGCCGACCTCGCTGTCCTCGCCCTCTACCTTG-TGGCGTCGGTGGGGTTGGGGAGATGAGTTCTCCGACGCAGCAGGCACCCCTGCTCATCTCCTATGGCTGTTGCCTTTTGGGCAGCCCCTCTTCGCGGCGGTGGGGCTGTCCCACCGGTCTGTCACGTTGCCCTTCCCTGGGCTTGTGAGGATTGGCTCCGCTTGGACCTTTGCGGTGCTCCCGGAGCCCTCCAGGTTGTCCCTCCGGTGCCCGAGGCCAAGCGGTGGTGTC-CTTCCTGTTCCCAGCAACCCCTCCT s canFam2.chr7 30167451 399 + 83999179 tgacagacgtggtgac--cttgttctcctgggctgggcctgagctccatcaggcagggatgg-----acatttatggtgaatgagaccatgggaccactcttcttgctctgt------cctg-ggcccctcacctctcctccctgcCCACTGGC------------------------------CTGACCATGCCCTCCTC----TCTGCCTCAATGGCGTCAGCAGGATTGG-------AGTCCCCTGACACAGT-GACAC---------TCTCATCTGCCTTTTGTCTTGTGTGTAGTGCTACC-CATGGCAGGAGGGCTGTTCCCCCA-----CCACACTGCTCATAGCCAGGTGTGTGAGGA--AGTTGTGCCTGGCCCTCCATGGTGTCCCTAGAGCACTCTAGGTTGTCCCTCAGGGGCCTGAGGCTAAGTGATGGCATCATTTCCCATTCCCAGTGACCCTTCTT a score=32569 s hg19.chr6_ssto_hap7 1157240 1403 + 4928567 GCTGTGCACTGCCCTGGTGTTCTGTCTGAGTCA---GGTGTTGATCTGGGCCTTGCAGGCTCATGTG-CTCTGGAGAAAAGAGAAA---AAATAGTAAGTGCTCCCCTGGGTGCACAGTGCTGCTTTTTACTCCCTGACGACTTCTCCCTCCTCAGTCAGTCCCAAATCAGATTCACCCTTTCTCCGAGGGAAGATGATGTCTGCACTTTTTTCTCCCTCCCATGGCACTTTTCCCAGCCCCTGCCAGTCCCCTC-CCGTGACTCCATCAACATCAACCCCTG-CCCTGTGCCCACCAGTCACCATGCAAG-GAGGAAAAGAGCCCCAGGACCAAAGGACAAGACCTGGGAA---AAACCCAGTGCCCTCCCCTCCTCTCAAGCCTGGCCAGCTCTGACAGCAGGAGGACTCCCCAAAGAGAGGCTCTGGCCCTGGCTCCATGTCCTTCCAGGACTGGGCTGGGTCACACGCACAG-TCCTTCTCTTCCT--CAGTCCCCAGTCCCACCTCACCTGTAGAGACACCTGCACACAAGGGCA----GGCCCTAAACACTGTGGTTCTGCCCTCCACCTGCAGCT-CAGTGCTCCTCCACTTCCAGCCCTGAGCAGGCAGCTCCTAACTGGGAAGCCCATTAAGAATCCCATCAGCATGGCAGGCCCAGCATGGAAACATGTAGCTGCTATGGGGTCTGCAGCTGACCTGACCCTGGGAACCCCCTTGCTCAAGGAGGCCCTGCCT--------ACCCTGACC----CCCAGGCCCATGACCTGCACTTGGGCCATGCTTGCTCCAGCCTGGTCCACTCATCCCTGGAAGCACAGCTTCTCCCCAGGGCTGCTGCTTGG-GGAGGCTG-AAAGGCCTTCCTCTCCTGTTCCTAGCAGGGATTCCTAGCAGGGATTCCACCCAAGCCACTGCCCTCACAGCCCATAGGGGATCTTCTTCTCCCTGTGGAGTAGAAAGTTTCTTGAGACCCCTCAGCCTGAGGCTGCCTCTGCCCACCCTTTGCACTTGGGGATTGCCACTGCCACAGCC-----ACCATCTCCCACATGG-ACCGTCCTGGAGAGGGAGCTCCACAT----TTGAGTTCCTGTTTCATTTGATATGCGTTACAACATTAGTATTGGTGGACATCCTTTTAAGACCCAGCTGAAACTACAAACATCTTTATTGGACATCAGCATTTAAAGCAGGAATTTTGAGAAATTAGCACATAACTTTCACACCCCTTTCCTGGCCAATGCCCCAGTAACCTACAAGGCAACCGTTCCCGCCCACGGGGAACCAGAACTGACAATCCCTCTTCAGGAGACACCACAGGTGAGAGCAGGAGCGACCACAGACCTGCACTGC-CCCTGCTGTGGGTGCCTCCTGGACAGGGCCCTCTTGCTGCAGGGCAGGGGATGAACCATCCCA-TCTGCCCAGGCCTGAGG s canFam2.chr12 71543888 1368 - 75515492 GCTGGTTGCTGCCATCATGGCTTGTTGGTGCTACCTGGTGTTGATCCAGGTCTTGAAGGCTACCAAGATTTTGGGGAAAAGAGAAACCCATAGAGC-------CCAATTTGTGCAAAATATTGTTTTGCACTTGCTCAGAACTTCT------TCAGTTACTCCAAATTCAG-CTCTGACTTTCTCTGAAGGAGGATAAACCCT-TGCTGTTATCTCTCTCTCA---CCCCTTTACCAGCCCTTGCTGCCCTCCCCACTGTGATGCC-TCAGCATCACTAGCTGGCCCTGCCTCCACCATCTACTGGACAGGAGCAGGAAAGGGTCCCAGGACCAA-GGACAACACCCTGGAGCAGAAACTCAATGCCTTCT--TGGTCCCAA--CTGTCCA---CTGACAG-AGAACATGGCCCCTGAGAGA---CATGTCCCTGTGGCC-TGTTCCTCCAGGCCAGACAGTGGTTACAAACACTGCTTCTTCTCTATCTGTCAGGCTC----------TCATTTGCATAAACACCTGAGCACAGAGACCTCTCAACCACAAGCACTG---------ACCTCACCTGCAGCTTCAGCCTCCTTCCTTCCCTAGCCCTAAGCCAGCAGCTCCTAACTGGAAGGCTCATCAGAGTGCTCAGGTGACCACCAGTCACAGTCTAGAAGAAGTGGACTACAGTGGGGTCTGTATTTGACCTGACTCAGGAGCACCCCATGCTCACAGAGGCCTGTCCTTGCCCTCCACCCTCACCCTGACCCAGGCGGCCAGGCTGCACTT-GGCCTTCGGTGCTCCTTCTTGGCCCACCTGCACCTGGAATCACAGCTCCTCCCCAAG--TGCAGCTTGGCTGAGGCTGCCAGGGCCTTCTGGCCCCAATCCTAGCAGGGA---CTAACCAGG-------------CAATGCAAGGAGAACCTGTTGCAG-TCTTCTTCTAAATGAGGTAGAGGGGG-TTCTTGAGACCCC-AAGCCTGAGGCTA--TCTGTCCATCTTCTGAACCCTGAGACTGCCATTGCCACCACCTCTCTCCCACCTCCCACATGGAACCCTCCCAGACA-AGAGCCCTCCCTCTGGTTGAATTCCTGATATATTTCACGCACTAAGCTAGCTCAGGATCTGAAGAAATCCTATTAAAATTCGTTTT---CTGAAATAATTTGTTTTGGACATCACAATTTAAAGCAGGAA-TTTGAGAAATTGACACATGACTTTTGTATTCTTTCTCCAGTAAATGCCTCAATGATATATGAGGCAATCATTTCTACCC-TAAGGAATCAAAACTGGTGTTCCCTCTGGGAGGGCCACCCCAGAGAACAACAGGAACATCTGCAGACCTGCATGGCTCTTTGCTCTAGTTGTGACCTGGTCTCAGCCC-CTCAGTGTGGGGCAGGGGACTAATCATCCCAGTCTGCCTAAGACCAAAG a score=5959 s hg19.chr6_ssto_hap7 1158643 205 + 4928567 GGCCAACTGACAGTGCAATTAGGTTCAAGGATGAGAAATCACCACCCCCTGCCA-----GATACACAGAAGTGG-GGAAATGGCAGAAAGACTCGGGTTTCCCGGACACTCCAGGCTCTCAGTGTCTCCTGCACTGTCTCTGTCTTTGCAGAAACACAAAACTTGCTGCTTGCTCTTTTCCCCTCCCTTCAAACAACCTGACTGTGCGGGA s canFam2.chr12 71545442 207 - 75515492 GGCCAGCTTATAAGTAGATTAGGTTCCAGAGTGAGAAAT--CCGATGCCTGCCATGATGGTCACCCAGCAGTGGTAGAATCAACTGAAGGACCCCAG-GCCCCACACACCCCATTCTTTCCCTGTCCCATGCATCACCTTGTTTTTTGCCCAAACACAAAACTC-CATCTTTCTGTTTTCACCTCCCCTCAACCAGCCTGATTACACAGAA a score=2571 s hg19.chr6_ssto_hap7 1158848 42 + 4928567 AATCATCCTGACCATCTCTCACTCCAAACTCATCAGGCAGTG s canFam2.chr12 71545804 42 - 75515492 AATCATTCTGACCATCCCTTCCTCCAAATCTACAGGGCAGTG a score=11775 s hg19.chr6_ssto_hap7 1169122 355 + 4928567 GGAGGCCAGGGGAGAGGGAGGACTGTGGCAGGTGAGGCAAGGAGCTGTCTGAGCCGCTCAGCAGCCTCCAGGAGTCGGC----TCTCTCCAGGCC-TGTCTTCACTCCCGTGCCTGGCCCTACCCAGGCCCCCACTCTTACTCTG------CTCTCAACCTGGCCCCAGACAGGATCCCAAACAACTCCTGTTCCTAATGTGAAAAATGTTTCTGCCGCTTTAGGCAGAACTTGCTTTAGAGCACTGGCGCAGACTTCCGCAGGTCTTGTGTCTGAATTTCTTGGCACTGtgc-cttttttcacttattcttctgcaaggaaggaattatatcactggttggatgagacaattggctcagatgggtt s canFam2.chr12 71481107 305 - 75515492 GAGAGCCAGGGCAGAGGGAGTACCATGGCTGGTGTAGCAGGGAGCTGTCTGAACTGCCCAACAGCCACCAGGAACTGGCTCCTTCCCTCCAGGCCTTGGCCTCGCTTCAGTGACTGGCCCTGCCCAGGGCCCTGCCCCTAACTTAACCTCCCTCCCAACCTGGCCCTAGACAAGA-------------------CTGATGTGAAAAA-GTTCCTGCCAGTTGAGGCAGAACTTGCTTTATAACAC----------------------------------TCTAAAAACTGTTCTCCTTTCTCA------GTTCTGCAAGGTAAAAGTTACATTGCTGGTGTGCTGGA--AACTGGCTCAGAAGGGTT a score=6974 s hg19.chr6_ssto_hap7 1169490 153 + 4928567 cccaCTGGGCAAGTGTCTGCTGGGGCCAGCTCTGGGCCAgatgtgcccaaggctctatagctagctggtggaaaggcctggagggttcatattcaagtccacctgacttgaaaactca----tattGACCTTACTTAAGTACCGATTCCCCCTTTAT s canFam2.chr12 71482362 151 - 75515492 CTCATTCAGCAAGTATCT-CTTAGTCCCTCTCTGGGCCAGATACgctcaagg-tctgcagctggttggtgggaaagcctggagaattcattcccaggtctacctga----aaagctcagatctattgactTGGCTGAAGTAATGATTACCCCTTTAT a score=14422 s hg19.chr6_ssto_hap7 1169995 586 + 4928567 TTTCCCTTTCCCTCTTT--TGAACTTG--------TTCTTGTCCTTGTCTGGTCCTGCAAGCTGTATGAGTTTGCCTTCTCTGGTAGGTCTGGGGAC-ATTGTATCCCTTATAACCTTGGTTCCTG----GCATATGA-CACTGGTA-------CCAAGCTCTGTTGGACTAGTGAG-GCTCCCTACACACCTCCTGAACTAGAGCAAAAGCTC--TGTGCACACACCGTGCATGTGTGAGCCTGTGAGGAGACGGTGCCTTCCTGCAGGCTGTTCTGAAGGGGTGTTCTGTTGTGACTGGAGGAAATAGCAATGGGCCCCTGGGCAGAAGTGGCTCAGAATGGAATGGATGGCCCCAGTTTTGATCATCTGGGA-ACAGGAAGATTCTCAGATAAAAACCCATGTTTTAGAAGACAAAACTGCCCAAGAGTGGACAGCAGCTAACCAGTAAGCTA--TCTGGGATATCACTGTACACTGGGAGGGAAGATGGCCTCTGCCATGGTGTAGGGTGCC-TGACCCAGACAAGGAGGCCTTCCTAGGGGTCAGTGCTTCTGAAGCACCTTTAAATGagg-----------acaaatacctcatgttcatgattagccgacttgtgcccac s canFam2.chr12 71482513 591 - 75515492 TTCCTGTTTCTCTTTTTGCTGGCCCAGAATGACATTTCTTGTC--TGTTGTGCATTGCATGTTGTAGGGATTTGCATTCTTTAGTAGTTTTGAGCACTGTTGTGT-CATTGTACCCTTGGCTTTTGAAAAGAATGTGACCACTAGTAATCGATTTTGAGCTTTGTTGAACTTGTGAGCCCTCACTATAAA---TCTGTAGTAAAACAGATGTATGATGTGAGCCTTGTGTACATGTGTTA-----------------ACCTTTTTGCAGTATATTCTGAA---ATGTCC---TGTGGCTGGAGTGTATAGTTCCGTCCTTATGTGTAGAGGTGGCTCAGAAGGGAGTGGATGGTCCCAGTTTTGATCATCTGGGAGAAAGGTAGGCCCTCAGAAAAA----TGTATCTCAGGAAACAAGATGGCTGGAGAGTGGACAGTTGCTAACCAGCTCACTGTTTTTGTGACATCATGCTGAATTTGGTGGGAAGATGGCCTCTGCCATAGCATGGAGATCCAGGAACTGGGAAGGGTGACCTTCCTGGAGGTCAGTGGCTCTCAAA---CTTGGGGCAGGGAGAGTTGAACCACCAAGACCTCACATTCTCCATTAGCTGACATGTTATCAC a score=18624 s hg19.chr6_ssto_hap7 1170581 429 + 4928567 tcagtggaaaaagaacccagaatttt-gcaaaattttcagagagagggattcccctcttgtctcttagtgctagggttatgcatgactcgtgcttgaattacagtgtgtacacagctgaaagtcttaattattagaatataagaggcccaaactactgctgttacagatatgtaaaactacacagtataagtttaaacaacccacaaccaattaacagtgaagataaattaacaacctttgtaaaatttaaaacaagattggcaaccctttagaaaa-----aaaatgagacttttgcaaaacaatctaaatgatacactaataacaaa----ccttcatgaaaat--gacatttcaaccatctgaa--tTTCTGCTTTAAGTTATAAACTCCAAAATGAACTAACTCCTAATAATTTACAGTAGGGAGCTCTAAGCCACAAA s canFam2.chr12 71483287 425 - 75515492 TCAGTGGAAAAAGAACCAAGAACTTTGGTAGGATTTTGGGGGATGAGAAG---CTTCATGTTTCTTAGCGATAGGGTTATGTATGATTCATATTTGACTT---GTATATGTATGGCTTAAAGTATTAGTTATTGGAACATAAGAAGCCCAAACTA------------ATGTGGGAAACTATCCAGTATAAGGTTAAAGAGACTATAAGCAACTAATATTGAAGCTAAACTAACCACCATCTATAAATTAAAAGCAAGATTTGTAGCCTTTAAGAAAATACAGCAGATGAGACTACTGTAGGACAATCTAAATGATGCACTAATAATAAAGTATCCTTCCTGAAAAGTAGGGATTTCTACCATCTGAGTTTTTCTATTTTAGGTTATGAGCTCTAAAATGGATTAACCTCCAATAATTTACAGTAGATATTCCTGAACTCTAAA a score=6594 s hg19.chr6_ssto_hap7 1180108 325 + 4928567 caggagacatgcacactaatatttatggcaaaaactggaat--cggccacatgtacatcaataggaaactggtgaaattgtggtaaaa---cgatatgtaagcc--ttcagccgtaaaaatgaatgaatgacagcctcccacaccacagataact--cctacacataatgtgtatcatgggaaaatacatgcagtaggaatttgctgtacaggaagcttaaaaaccagcaaaactaactgaggtttgttttggggagatatagatatacttattgcacaaatctttgaaggaatacaaaggaatacgtatcagaagactca-ggatggAGTCTCC s canFam2.chr12 3981321 320 + 75515492 CAGAAGACTCGTGCACTAA-GTTTATGGGGaaaactggaataacccccacataaaaataaataggcaaatagcaaaaatgtgatttaatcccaaaatgtaagacagtacagcagtaaaaatgagtgaactaca--ctaacacatcg-ggataagttacctgcatgtaacaacgat--tcacagaagacatgtagttgtg-tttactgtacaaggaggt--aaaacaggcaaaaagcaataatattggctttggg----cacagaaacacttattgta-aaatcgttagagcact-caaaggagtggttagccacgaattcttggacagaggttac a score=16090 s hg19.chr6_ssto_hap7 1180954 650 + 4928567 CTATGGGGTG----ACTGGGTAGCAGCCCAGGGTAGCTTTACAGGTTTGTGTTTTACACCAGT----GCTGGGCACCCTGGTAGATACTTGATTATAATTCCTTAAAC-AGAGTTTTCCAAATTAAA--------ATATACCTGttt-------tttatagaaatgaaaaagaaaagaatttcaaagttcattgcaaagattctt-------------------------aacaagaactacttacattggaagaaaaccacagagaattgtaaggagccatgtgacagagaggac-caggatgccatgaaaatggcattggctacaaataggtcatttgatccttggctccctggcatc-tctctagATTTTCAATGATACAatgttcaatctgctgtgcaagataatttcatcttccaaag-atttgatgttacatttta-ccacacattaaactgaaataaa--cttttacagattggaaatgcacatcattgatcaaaataaatgaaacatgaaaagagtagggaggaatacccagtgatggaatagcaaatatgaatggaaa--acag--aataggactgctaaaaagaaaaaaaaattcagaagcatgtaatagcagcactatttagaatcatagtggtgtccaaatcacttctatcacatctcattcaataccacaacaaa---agatgttaagtttattataga s canFam2.chr12 3981641 684 + 75515492 acctggggTACGGCACTGGGGAGTGGCCCATGG-GGCTTCA------TGTTTCTTGTCCCAATTGGGGGTGTGTGCCCAGGTGTTTGCTGTTTCAGATCTTCTGAAACTGGCATTTTTCAAACTGGAGTTGTTTTATATTCCAGGTTCATTGTTTTTAAGGAAATTAAAAATGAGATA---CCAAACTTCATTTCAAGGATACTTGGTAATCCATTGCAAATTGGATCAAagcacaaactgttcacattggaatagagccacagtcaattatcctgagccatgt--tagagaggatacagaaagtcataacaagagttttggcta-gaataggtcatttgatctttttctcgctggcaccgtctattgttttctgat-atacaatgttcaatgtggtgtgcaaggcaattctatcttgtgaaggatttgatgtgtcacattaacctcccattcaactggattcaatacattcagagaatgaaaa-gcatattgttgctcaatataaattaaac-tggaaatcattcaatggaataaccactgatgaaatagcaaatacaaatggaaatgacagcaaatagagctgt--------gtaaaaaattttagtgcatt--gtgacagtgcttttttgaaGTATGTTACTGCCTAAATCTCTTCTACTAAATTTCACTGAAAACAACCATAGAGAGAGATGttaaat--attataaa a score=6779 s hg19.chr6_ssto_hap7 1182788 197 + 4928567 TTAAAAGACAAGCTTAAAGAAAAAGACAAGCTGAAAGAGTTAATGAAAAATAATTAGATAAAAGAAGTCTTTGATTTTCAAAAACCTGAAACAATAGTTA----TAATTTtgcttttaacatatattcaaaacatttgatac---tgttcccttccagaggtgcatcttaat-tccctctcctgagtgtgg-cttggacttaatga s canFam2.chr12 3982358 188 + 75515492 tccaaagagaaatttgaagca------------------ttcaaggaaaataattgggtgaaagaagcatttgatttacaaaattctgaaataatatttagttTTGATTTtggttttaacaggttcacaaattctttgacaacaatcctcctttccagagatggatcttaatgtcctcctcctgagcatggacttgcactgaatga a score=18481 s hg19.chr6_ssto_hap7 1183375 505 + 4928567 acttctaacttatagaataatgctgacataatggtttgtaactctgggtgtag-aacctaaaactcactgcggcttccacct-------------------------tctctctctctgtctctgg----------------gatcatgagctctgggggaagccagctgctgtgccacaagcagccctgcaggaaggtccatgtggctgagaactgaggccttccgggaccagacaacaaagaact-aggccttttcc-------------------aacagccatgtgactgatccatgtttcatgtgaatcc-tcagccccagtgaagccctcagatgatgcagcccttggctgacaat---------------tggactgcaaccttgtgagaggccccgagcaagaagcactcaggga--aacctctcctggactcctgaccattggaaactgtggcagatgaggaatatttgttgttttaagct---aagttttacataatttgttatgcaatagtaaataaataacacaT-TTTCACAAGAGAGGATGTATTATTACACATTAAATTGCATTTGCTTTAAAT s canFam2.chr12 3982549 586 + 75515492 acttctaactgatagaa-aaggctgatgtgatggtgtgtgacccaggacctaggaacataaaacacattgcagcttctacctggctttttctctctctttttgtctgtctgtctctctgtttctgtatctgtctctgtctctggttacttgcactgggggaaga-agctacctagttattagctacctaatggaaaagtccacacagctaggaactgaggccccttgggaccatctgggaaggaaatgaggcctcttcctcatttcctcatttccctcaacagccatgtgagggagccttatgtcctaggaatccctcagccccagtcaagccatcagatgatgcagtcct-gtctgacaacccagtcctgtctgacttgactgcaacccagagagaggccctgagacagaagcactcaggtataagcctctcctggattcctgaccctgggaaactgtgggacacaatatatatttgttgttctgagctgctatgctgtggataatttgttaggcaccagtacataactattataGAgtccaaagaagagaatgaagtattgcactttaatttcgattggctctaaat a score=10042 s hg19.chr6_ssto_hap7 1184186 298 + 4928567 taattataagatattaaacat-gtaacttagttttaaaaggtaaggagaatttccatggct----gaagaggatgtattttatgaccattcacaatgatcactttacttgaacttcaatttccaactgtgtccgaagtaaacacaaaaggaagaTCCAACCCTtgctaggctgattctattatgccct-caacaaccagctcctggtcattcaccatcctccagttattcaatcaa-ctctaatgtaggtgctgctgtgaagggagttagtggatataattaagggtctcaattagttgacttta s canFam2.chr12 3983135 300 + 75515492 taactat--gatattaaacatcatctattggttttaagatttaagaagaatatctatgtctaagggaacagaatgcatattattaccattcacaacaatctatttatttggagtttgatttctgacggtaaaccaattaaaca--aaaggaagaagcaggctGTCCtaggcagatgctaagatggcctgccataactaacctctggttattcatattcttccagttgttggatcaaacactaatccaggtgctagcgtgaaaggactttgcatatgcagtgaaggttc-agatcagctgcattta a score=4183 s hg19.chr6_ssto_hap7 1184492 139 + 4928567 ttatcctgcttgg-actgtcctaatcaggtgagaccttgaaaggactgggttcttcctgagcatagagactcacagtgtgagagggactcagcatgaggggtttcctccagcatgggctttgaaaatgaaagggctgtgg s canFam2.chr12 3983703 127 + 75515492 ttatcccaagtagtcctgacctaatcaggtgagcccttaatagcacagggtgcttcctgagtgaagggactggaagagtgagcaggattcattgtgagtgg-------------aggctttatgatggaaggggctcccg a score=23098 s hg19.chr6_ssto_hap7 1184969 1025 + 4928567 ggaaagaatgctggtgaggaccaggaatcgagcacagccctccctgttctctacattgacagccagcaaggaa-cagggacctcagtcttacaactgccagaaactgcattctgccacc---tctgtataagcctgaaggaggat-------tcaaaatgaaaacacagcttttggaagcccagaagagagattccatccacaattttgcccagatttctgatc-aaggaactataagcagataaatgggtgttgtt-----tCGCCAGGC--ATGGT----------------------------------------AGTGCAC---------------------GAATGAATTGATGAATTGATATGCACACTAGTTACATAAAATAAAAATTTTCTGAACTTTTTCCGTGTTTTGCACTTTATAATTATCT-GTAATGCAATTTAAT----ACACTCATATTTCattcattcagtcgacaaaaattaatttagtccctacgataaaccagatAT-------------------------CCCCTCA-----------------TATGCTCACGTGCCTGACACTCCAGAAGTTTCTCAAGACCgaggtggagacactggagtgttttaagtggagagatgacacactccgactCCCAGGAGCAGGACCACTG-------TGAAAAGAACAGTCACG--TAACAGGTCATGGGACAGTGCTAGTGTCACAACTCACAAGTGACAGTGTGGTGGGGACTAAGGGGACAGGAGGGCCTGAAGGATGAAAAGGACGGAGAGAAGGGCTGGAGAAGCAGGAGGTGAAGAAAAGGAGCAGAGG-AAAGAATTCGAAAGCAGCAGAATTCTTAGGT-TTAAATACATTGTTTTATGGA--TTTTAATACATCCATCTACAGAGCCTAGCAGGGTGTCCTTGGCAGTTGGTCTTTAATACCTCATGTGGGTCTGCCTAAAAAC---TAATTTTTTAATGTTAATCAGGTTTAAAAATTA--CTAAGTGTTCCTATAAAATATACACAACACTTAGCAGCGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTAGTGAGGGGCATTGTGACTACACTGAACAGTTGCAACTTTGAGGTGAATAAAGCCTGTACTGACTCCTGGTTGCAACGTAC s canFam2.chr12 3983830 1130 + 75515492 gcaagcaatgctggtggccac-aggagctaagaacagcatccc-----------actgacagcgtgccaggaagtggagactgccgacctccaactacaagaactggaattctgctaacagatctgtacaagcttgtagggggacctcaagctctagttgcaaacactgtctgtgacatgct-gaggagaagacccctcagca-tcactcctggactgctgacctacagaactgtgcacatacacatgggtgtggttgtaagtcactatgtttgtggttaatttgttatgcagcaatagaaaaccaccacaTAGCCTCAATGCACATCACATTTTCCCAGTGGAATGAATGAATGTATGAATCGTCGTGCACACTAGTTGCATGAAATAAAATCTC-----ATTTTTCATGTATTTTCCATTTTGTGATTTTTAAGTGATGGGATTAAAATCTAATAGTCATATTTCattcattcattcaacaacaattaatttagtgcctactctgcaccaagaatggctttctacactaggggtacagctttcctcaaagtagcccaaagcacctgtgctt-catgctttacattctagaggCTTCCTAAAagtgagatggagcccctggagcattttcagtgatgaaatgacacattctgactcacattagcaggatcactgaccccagtggagagagtggccctgggtggcaggtgttggggtggcagcagggt-gcaa-tcaggag----AGCG-GGTGGAGACTAAGGGGATGAGAAGGCATGAGGGCTGAGAGAGATGGAGAGAAGGGCTGCAGATGCAGGTG--GAGGGAGAGAAGCAGTGGTAAAGAATTCTAAAGTAGTGGAATTTGAATACATTGAATACATTGTTATATCAATTTTTTATTTAATCTCTAT-TAGGTCTTAGCAAGATATTGTTTGCATCTAATATTTACTGCACTCTGTGGA-----CTGAATACCTGTGGCCTCCTTATGTT-ATCAGGGTTAAGAAGTAACCTAGATGCCACTAATACCCAAATAAAATCGTCCTTAGGTGCTCATTCATACACACAGGCAACAC-TGAATGCTGATGACGGGCATTTGGACTGCCCTGAATACTTGCAACTATGAGGTGATTAATGGTTGGAC--ACT-CTGATTGAAATGTAC a score=8960 s hg19.chr6_ssto_hap7 1186010 439 + 4928567 CAGTGTGCTACTTTGTATTGAGGAGATATCCTGGACTCACACAGAAACTCAGAGCTATGGAATGATGGCAAATTTAAAATATGACAAGCGGGAGTCACAGGTACACTGCAAAAGTGAAACTTAGAAGCTTTGTGAGTCCTGTTGTAACGCT-TTTGGGCACATTTATACATCATGGGGCCAAAGTCACATTTTTTACCTATTAGATTCCTGATCATTCAGGGGTTACCAAGGTTCTGCTATCCAATGTATTTAATAAACAAATAAATAAATAAACTGGTCTCTAT-------TCTGTCTCATGCACTCAGACACAACTTTTCCCAATaaaaaaaaaaaaaaaaggaaaacaaaaaaCA----GTTTCTACACCTCCATTCCCAAAGCAAGCTCACTCTCTGTCACCAAACTCC--GTGGGTGACTTTTCTTCTAGAAGAGTCCAGATGGACAG s canFam2.chr12 3985508 396 + 75515492 CAACGTGCATCTTTGTATTGAGGCTATGTCTGGAATTCACAGA------CGGAGCTATGGAACAGAGGTCATTTTAAAGCACAAAAACTTAAAGTCTTGGCT----TGGGAAAGTGAAAATGACAGCTTTGGT------TATTTCAAAGCTGTTTAGGCAAATTTATACAGAA--AGGATAAAATCACTACTTTGACACATGCGAGTCCCGATCTCTCAGGGGTTGTCAAGATTATG------------GTTAAGAAACAAGAAGA-----AAACTGGCCTCTGTGAAAATCTCTAGCTAGTGC-CCCAAGCACACCTGCCTCAGGTA---------------------CAGAAGACACCTTGTTCCTTCACCAATTGTCCCACAGTCAGCTCTCTCTCTGGCATCAAATTCCCTGAGAGTAAGTTTCCTTCTCAGACAGTCCAGGGGGACTG a score=132934 s hg19.chr6_ssto_hap7 1186449 3690 + 4928567 GGAGTCCAGTTCAGGGAC-------------GGAGATTCCTGGATGAAAAGTGAAGGGAGAGGGACAGGGCCCATGCCGAGGGTTTCTTCCTGGTTTCT-CAGACAGCTCCTGGGCCAAGACTCAGGGAAACACTGAGACA--GAGCGCTTGGCACAGGAGGAGCGGGGTCAGGGCGA-----AGTCCCAGGGCCCCAGGCGTGGCTCTCAGGGTCTCAGGCCCCGAAGGCGGTGTATGGATTGGGGAGGCCCCGCCTTGGGGATTCGCCACCTCCGCAG-TTTCTCTTCT---TCTCACAACCTGCGACGGGTCCTTTTTCCTGGATACTCACGAAGCGGGCACAGTTCTCATTCCCACTAGGTGTCGGGTTTCTAGAGAAGCCAATCGGTGCCGCCGCGGTCCCGGTTCTAAAGTCCCCAC-GCACCCACCGGGACTCAG----------------ATTCTCCCCAGACGCCGAGGATGGTGCTCATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCAGGGGCCCTG------ACCCAGACCTGGGCGCGTGAGTGCAGGGTCTGCAGGGAAATGGTCGGGAGGAGCGAggggcccgcccggcgggggcgcAGGACCCAGGGAG-----------------------------------------------------------------------------------------------CCGCGCAGGGAGGAGGGTCGGGCGGG-TCTCAGCTCCTCCTCG-CTCC-CAGGCTCCCACTCCATGAGGTATTTCTACACCACCATGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCTCCGTCGGCTACGTGGACGATACGCAGTTCGTGCGGTTCGACAGCGACGACGCGAGTCCGAGAGAGGAGCCGCGGGCGCCGTGGATGGAGCGGGAGGGGCCGGAGTATTGGGACCGGAACACACAGATCTGCAAGGCCCAAGCACGGACTGAACGAGAGAACCTGCGGATCGCGCTCCGCTACTACAACCAGAGCGAGGGCGGTGAGTGACCCCGGCCCGGGACGCAGGTCACGACCCCTCCCCATCCCCCACGGAGGGCC--GGGTCGCCTCGAGTCTCTGGGTCCGAGATCCTCCCCGAAACCGCGGGACC-CCGAGACCCTTGACCTGGGAGAGGCC--CAGGCGCCTTTACCCGGTTT--------------CATTTTCAG--TTTAGGCCAAAATCCCCGCGGGT-----TGGTCGGGGCAG--GGCGGGGCTCGGGGGACCGGG------CTGACCG---CGGGGGCGGGG--------CCAGGTTCTCACACCATGCAGGTGATGTATGGCTGCGACGTGGGGCCCGACGGGCGCTTCCTCCGCGGGTATGAACAGCACGCCTACGACGGCAAGGATTACATCGCTCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACATGGCAGCTCAGATCACCAAGCGCAAGTGGGAGGCGGCCCGTCGGGCGGAGCAGCTGAGAGCCTACCTGGAGGGCGAGTTCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCACAGGGCGCCTCCCGGATCGCCTGTAGATCTCCGGGGCTG-GCCTCCCAC-------AAGAAAGGGAGACAAATGGGACCAACACTATAATATC------GCCCTCCCTCT--GGTCCTGAGGGAGAAGAATCCTCCTGGGTTTCC---------------AGAGAGTGACTCTGAGGGTCCGCCGTGCTCTCTGACACAATTAAGGGATGAAATCTCTGAGGAAATGAAGGGAAGACA-ATCCCTGGAAT-ACTGATGAGTGGTTCTCTTTGACACTGGCAGCAGCCTTGGGCCCCG-----TGACTTTTCCTCTCAGGCCTTGTTCTCTGCTTCACACTCAATGTGTGTGGGGGTCTGAGTCCAGCTCTTCTGAGTCCCT---CAGCCTCCACTCAGGTCAGGACCAGAAGTCGCTGTT-CCCTCCTCAGGGA-------------------------------------CTAGAGTTTTCCACGGAATAGGAGATTATCCCAGGTGCCTGTGTCCAGGCTGTTGTCTGGGTTCTGTGCTCCCTTCCCCACCCCAGGCGTCCTGTCCATTCTCAAGATGGCCACATGCGTGCTGGTGGAGTGTCCCATGACAGATGCA----AAATGCCTGAATTTTCTGACTCTTCCCGTCAGACCCCCCCAAGACACATATGACCCACTACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCA-CACACGGAGCTCGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACCTGCCATGTGCAGCATGAGGGTCTGCCCGAGCCCCTCACCCTGAGATGGGGTAAGGAGGGAGATGGGGGTGTCATGTCCCTTAGGGAAAGCCGGAGCCTCTCTGGAGAGCTTTAGCAGGGTCAG-----------------GGTCCCTCACCTTCCCCCCTTTTCCCAGAGCCATCTTCCCAGCCCACCATCCCCATCGTGGGCATCATTGCTGGCCTGGTTCTACTTGTA---GCTGTGGTCACTGGAGCTGTGGTCACTGCTGTAATGTGGAGGAAGAAGAGCTCAGGTAAGGAAGGGGTGAGGAGTGTGGTCTGAGATTTCTTGTCTCACTGAGAGTTCCAAGCCCCAGGTAGAAGG--GCCCTGCCTGGTTACTGGGAAGCACCATCCACACTCATGGGCCTACCCAGCCTGGGCCCTGTGTGCCAGCACTTACTCTTTTGTAAAGCACCTGTTACAACGAGGGACAGATTTATCACCTTGATGACTGTGGTGATGGGACCTGA-TCCCAGCAGTCACAAGTCACAGGGGAAGGTCC---CCGAGGACAGACCT-CAGAAGGGCGGTTGGTCCAG-GACCCACATCTGCTTTCCTCA-----TGTTTCCTGATCCCGCCCTGGGTCTGCAGTTGCACATTTCTGGAAACTT-CTCTGGGGTCCAAGACTTGGAGGTTCCTCTAGGACCTTATGGCCCTGGCTTCTTTCTGGCATCTCACAGGACATTTTCTTCC--CACAGATTGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATCCCTGAAATCCTTTGGATATTGTGTTTGGGAGCCCATGGGGGAGCTCACCCACCCCACAATTCTTCCTCTAGCCACATCTACTGTGGGATCTGACCAGGTCCTGTTTTTATTCTACTCCAGGCGGCAACAGTGCCCAGGGCTCTGATGTGTCTCTCACGGCG-TGAAAGGTGAGACCTTGGGGGGCCTGATGTGTGGGGGGTGTTGGGGGGGAACAGTGGACACAGCTGTGCTATGGGGTTCTTTGAATTTGATGTTTTGAGCATGCGATGGGCTGCC-AAAGTGTCATCCATTACTGGGACAGATAT-----------GAATTTGTTCATGAATATTTTTTCT-ATAGTGTGAGA-CAGCTGCCTTGTGTGGGACTGAGAG--GCAAGATTTGTTCACACCTTCCCTTTGTGACTTGAAGAACCCTGACTT---TCTGCAAA-GGCACCTGAATGTGTCTGTGTTCCTGTAGGCATAATGTGTGGAGGAGGGGAGACCAACCCACCCTCATGTCCACCATGACCCTCTTCCCCACGCTGATCTGTGTTC-CCTCCCCAATCATCTTTCCTGTTCCAGAGAGGCGGGGCTGAGATGTCTCCATCTTTTTCTCAACTTTATGTGCACTGAGCTGTAACTTCTTACTTCCCTCTT-AAAATTAGAATCTGAGTAAACATTTACTTTTTCAAATTCTTGCCATGAGAGGTTGATGACTTAATTAAAGG s canFam2.chr12 3986275 3868 + 75515492 GGGGTTCAAGGCAGAGACTCAAGCTCAGCAAGGGGTCTCCGGGAAGGAAGAC--AGGAAAAATGGCTGAGCCCA-GTCTGGTGTCTTCACTTGGTTTCTTCAGAAAGACCCTGGTCCAGGAGTCAGGGGGAAAGTGTAACAAAGAGCGCTGCACGCAAGATGAAAAGTGTCAGGTCACTCTATGGTCCCGGGGA---GGGCGAGGCTCTCAGGCTCTCAGGCCCC-AGGGCGG-GTCCGGGGCGGGGACGCTCAGGCT-GGGGAGTCCCCACCTCCCCGGGTTTCACTTCTCCGTCTCCCAACCTGGCTCAGGGCCCCCTGCCTGGAGACTCGTGACGCAGCCCCAGCGCGCACTCCCATTGGGTGCAGCGTTTCTGGAGGAGCCAATCAGCGGCACCGGGTCCCGGGCTCGAAAGCCTCCGCCGCCGCCTCCGCCCCCCAGTCCGGCGGCGACGGCCAGTGTCCCCGGAGCCCGGAGATGGAGGTGGTGATGCCGCGAGCCCTCCTCGTGCTGCTGTCGGCGGCCCTGGCCGTGACCCTGACCCGGGCGGGTGAGTGCGGGC--------------------GGGAGCGAGGGGACCGGCGGGCGGGGACGCGGGACCCCGGGAAGCCGCCTCTccgccgcccccggccccccgcggcctgggctccccggtccctcccgcctccgccccgccccgggcatctcccctgggccccgggccccgcggcgggagg-gggtcgggcggggTCTCAGC----CCTCGGCTCCGCAGGCTCCCACTCCCTGAGGTTTTTCCACACCGCCGTGTCCCGGCCCGGCCGCGGGGACCCCCTCTACATCTCTGTGGGCTACGTGGACGACACGCAGTTCCTGCGGTTCAACAGCGACGCGGCGAGTCCGAAGGTGGAGCCGCGGGCGCGGTGGATGGAGCAGGAGGGGCCGGAGTTTTGGGAGGAGCAGACGGAGATCGCCAAGGTGCACGCCCAGACCTCCCGATCCAACCTGCAGACGGCCCTCGGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCCGGGCC--GGGTCCAGTTCACGAGTC--CATGAACCCCCTTGCACAGCCTGGGGTCTCCCCGAGTTCCCGGGTCGGAGATTGACCCCCGGGCCAGGAGACCGTCCTGGCCCCCTACGCGGGACGAGCCTGCAGGGACTTGCGGACAGTTTCCGAGGTCTCTGACCACTCGCCGGCCGTAGGTCCAATGCCAGGGGAGTCTAGGTGGACCGGGCTGACGGCGGGGACCGGGCTACCGGGGCGGGACTGACTGAGACGGGGGCGGGGGGGGTTGCCCAGGGTCTCACACCTTCCAGTGGACTTCGGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGTATGAGCAGTTCGCGTACGACGGCGCCGATTACCTGGCCCTGGACGAGGACCTGCGCTCCTGGACCGCGGCGGACGCGGCGGCGCAGATCACCCGGCGCAAGTGGGAGGCGGCGGGCGCGGCCCAGTACTACCGGGTATACCTGCAGGGGGAGTGCGTGCAGTCGCTCCTTAAGTACCTGGAGAGAGGGAAAGAGACCCTGCAGCGCACAGGTCTGTGGGGCAGCTGG--GACTCCGGGATCTCCCCT--CCCGCTGGGGCTGTACCTCCTGCTATCCCTACAAAAAGGA---AAATGGAATTGACACCAGAATTCCTCCCCTGCCCCACTTCTTGGATCCTGAAAGTGAAGA--CTTTCTTGGTTTTCAGTTCTGTACTAAAGAGAGACTCGCTCAGAAAACCCATCCTTCTCTCTGG-ACATTTAAGGGATCCAGTCTTTATGGA---GAGGGATAGAGATATCTCTGAAATAATTTAATAGCAGATTTCTTTGACCCTGGCATTCACCTTGGGCACCACTGACTGACTTCCTCCCTCAGGCCTTGCTCCCTGTCCCACACCCCACTTAATTGGAGGTCTGCCTCCAGGTTTTAAGAGGCACTGGACTTCCTCTACCTAGGTCAGGACCAGAAGTCTCTGTTGTCCCACTCAGAGACCTGGAACTTCCTACCTTAGGCTATCTTATCCTGATTCTAGATCTTCCAAAGGGATAGGAAGGTATCCCAGATCCTGGAGTTCAGGCTGGTGTCTGTATTTTGCACTCCCTCTC---CCCCATTTGTCCTCTTCATTCTCAGCATGGTCACAACAGTGCTGCTTAGGTGGCCCAC--CCGGTATAATGCAAATTTGTAAATTTTCTGACCCTTCTCCTTAGATCCTCCAAAAATCTACCTGACCCGCCACCCCATCTCTGACCATGAGGTCACCCTGAGGTGCTGGGCGCTGGGCTTCTACCCTGCGGAGATCACCCTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACAGAGGTTGTGGACACCAGGCCTGCAGGAGATGGGACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCCTCTGGACAGGAGCAGAGATACACGTGCCACGTGCAGCATGAGGGGCTGGCGGAGCCTGTCACGCGGAGATGGGGTAAGGAGGGCCTCGGGGTAGAGCTTCTACTCAGGGCAAG-TGGAGCTCTTCTGGAGAATTTCAGCAGAGTCAGGTCTCAAGTCAGAGGCTGGACCCTCATCCTCCCTCCCCTTTCCAGAGCCTTCCCCTCTGTCCACCATTGTCATCGT---CAGCATTGCTGCTCTGGTTCTCCTCGTGGTCGCTGGGGTGATTGGAGCTGTGATC------------TGGAGGAAGCAGCGCTCGGGTAGGGAACCGACT----GAATACTCTGTGTTTTCCTGTCCTGTTGGGGGTT-----TCCTAGGGAGCACGCTGTCCTGCCTTGTTAACGGGAGGTGCCGTCCATACACGGTTACTCTCCCACACTGGA-GCTGTGTACTCACACTCACTGTGCAGCAAA-CACTTGGGAAAATGAAGGCCAGAGTT-TCGCCTTGGTGATTCTGGTGACGGGGACTGATTCCCAGCCGTCACAGGACAGAGCGGAAGGCCCCTGCTGAGGACAGACCTCCAGCAAGTCAGGTGGTCCAGTGACCC-------CTCACCTCATGGCTTGTCTCCTGACCCTGACCTGGGCGGTCAGT--CAGAATTCTGCAGACTCACTCTGCA--CCAGGACTGGGAGCTTCCTCGAGGATCTCCTGGCCCAGCCCTGTGCCCGGCCTCTCACATGATGTTTTCTTCCCACACAGGAGGAAAAGGACCAGGCTACTCTCATGCTGCACGTGAGTATGCAGGGAG-TGATCCCTGAGA-CCCCGGGGGAGTGTAGACAGGACCCCAT-GGGGAGCTCAC---CCCCACAGCTGCTCCTTTAGTCTCACCTCCTGTGAGCTCTGACCACGTCCTG--TTTATTCTCCTCTAGGTGATGACAGTGCCCAGGGCTCTGATGTGTCTCTGACAGCTCCTAGAGGTGAGACCCCAGAGACCCTGAAGTGGGGAGGGT--------------------------------TGGGGCACTGGGGACCAGA-----TGAGCACGAGG-GGGCTGTTGAGAATGTCAGCACTTA-TGTGACCGACCTCACAGTACCGACAATTTGTACTTG---ATTTTTTCTCACAGTGTGAGACCAGCTGCCCTGTG-GGGACTGAGCGATGCAAGATGTGTTCACATC-TCACGTGATGACATCAACAACCCTGGCTTGTCTCTGCAAACAGTGTCAGGATGTGCCTGTGTCCCTAGGAGCATAATGTGAGGAGGTGGGGAGATTGGCCCACCC---TGCCCACCATGACC--TGTCCCTAATCTGATGTGCGCTCTCTTCTCTGATGTGCTTTCCTGTCCAGGAGAGGGAGGGCTGGACCATCTCCATCCCTGTCTTTGTTTCATGT----TGAGTACTAATGACTTACTACCCGATTGAAAATAAGAATCCCGATATGAGTTTGTGTTTCCTGAGTCTTGGGATGTGGGGCTGATGAGGTAATAAAAGG a score=10496 s hg19.chr6_ssto_hap7 1190139 253 + 4928567 AGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAACACATGAGAACCTTCCAGAGTCCATGTGTTTCTTGTGCTGATTT-GTTGCAG----GGG------------AGGAGAATAGATGGGGCTGTGCC------TAGTGGGTGCTCAGGCCAGTATGGACTTTATGTGGTCACTGCTCAGCTGGGTCATCTTTGCTCCTTCATTCTCCTTGGCCCTTCAGTAGAACCTTGTCCCACCACCACCTGTGATCACAGGGACTTGGATGTCACCTA s canFam2.chr12 3991069 271 + 75515492 AAAAGATTTCTGAAATT-GAGAGAGCAAATAAATGGAAGCCCTGAGAACCTTCCAGAATCCTCATGTTTGCTGTGCTGAATCAGTTGCAGTTGGGGGCTGAAAGCTGTCAGGAGCGTAGGGGGGACGGTGCCAGTGCCCAGTAGGTGCTCAGTACATACTGGGTGAGTCGTGTTCAGGCCTCAGCGGGGTCCTCTCTTCTCCGTG----TCCTTGCCCCTTCTATAGAAGCTTGTCTCACCAGGACCTGTGATCACAGGGACTTGGACGTCACCTG a score=9315 s hg19.chr6_ssto_hap7 1190392 691 + 4928567 CGGTGGT--------------------------------------------------CCCTGCATACAAATCTCATTGTGGTATCAAGAGACTAATTTTCAGACCTGTCCAGCTCTTGCCCTCCTCCCAGGACTCTTTCCTGGATTGTAGTTTTCATCTTGTCTCCAATCTTTTTAAAGGAAGCAGATTCTGAAATTTGCAGAGAGGAGGGGTCCCATAGTTTCTCATCATAGTGAACTTTCTGTTGGAGCT----CCTCTTCTGCTCTCCTACTCT-TCTTCCTGCCCTGAGTTGTAGTAATCCTAGTGCTGGCTCCAATCCAAACTCATGGATTTACAAAGCAGAGTCTAATTTAGATTCATACGTGGTTGGAAAATTGTACCCA-TAAGCCTAGGGTTATCTTTCCTGAAGAGAAAAATATGGTTGTGTGCTGCAGTGTGCAGGAGGGTTGGTGTggggggagggagggagggagggaggACACACAagcagtcctggtgagaaaagcactggcggtatcgatgtccacatgagatgatgttgttctttagctgccacaaaacagcatttgccctgaggctaccttaacaaagatattggctttagaatagagaagTGCTCTACAGTGAtcattcattc------aactgacatttgttgtctgctagggatatgactgcttttgcgtttagaaagcatc-----attaaggtgaaaacagaaaaatttctggtgttgtggtacatatgttctag s canFam2.chr12 3991544 655 + 75515492 CATTGGTTACAGCAGCAGGTGTCCTTTGGGCTCCCGTCTCCACAGGCCTAGGTCGTCCCCTGCACACAGGAGTCCCCGAGGTTTGGAGAGATGAACTTCCAGATCCATCCAG-TCTCCCCCTCCCTCCGCAGCTGCTTTCTGGATTATTGTTCACATCCTG----------------AGGTAG-----------------AGAGGGGAGAAGT--CAGAGGTTCTCCTCCTCATAAGCGTCC---AGGAGTTTCTGCCTCCCCTGCTGCTCTGCCCTCCCTCCCCGCCCTGGGCC-CCGTGATCCCCGTG---------------------GGATTTATAAAGCAGAGTGTAACGTAGATTTCTCTGTGGCTGGAGAAGAGGACCCAGGAAGCCCAAGTGCAGGGTGCCTGAGGAGTGAACTCTG--TGCGTGGT---GTGTGCAGGAGAAACGGTGTGGGGGTGGGAGCTGAGGGAGGGAGG---TGGGGGCAGCCCC-ATGAGGAGAG-AGAGGGGGCACTGATGACCA-GTG-GCTGGTGGGGGGCAGGAGCTGCCACAGAACAGCTGTGCCCCAGGCGCT--------------------TCTAGAAGAGGGAGACCCTCTTCC-TGCGCATTCATTCAGCTGTAACTGTCCTGTGTCACATGC--AGGACAC-ACTG--TTTGCATCTGGGCAGCTCAGTGAGACTCAGGTGA----GGCAAACCTGCTGGTCTCCTGGAGAGTATGTTCTAG a score=20896 s hg19.chr6_ssto_hap7 1195499 456 + 4928567 TTTCCAAGGAATAGGAGATTATCCCAGGTGCCTGTGGCCAGGA-GGTGTCTGGGTTCTGTGCTCCCTTCCC-CACCCCAGATGTCCTATCCATTCTCAGGATGGTCACATGGGTGCTGCTGGAGTGTCCCATG-AGGAATGCAAAGTGCCTCAATTTTCTTACTCTTCCCT-TCAGAATCCCAGAATGCATGTGTGATCCACTACCCCATCTCGGACCATGAGGCCGCCCTGAGGTGCTGGGTCCCGGGCTTCTACCATGTGGAAATCACAGTGACCCAACTGTGGGATGGGGAGGACCAAATTTAGGACGCAGAGCTTGTGGGGACCAGACCTGCAGGGTATAGAACCTTCCAGAAGTGGGCAGCTGTGGTGCTGTCTTCTAGAGACAAGTAGAGATCCACATGCCATGTGCAGCAGGAGGCACTGCCAGAGCCCCTCACACTGAGATGGGCTAAGGAG s canFam2.chr12 3937973 447 + 75515492 TTTCTAAAGATTAGGA---CATCCCAAA-------GGCTAGGTTGGTGACTGGGCTTTGTGCTTCTTCCAAGTGAACCAACTGCCCTGTCCACCCT-AGGATGGTCACACAAATGCAGTCTCAGTGGACCACGCAGTTAACCAAAGTG--TGGGTTTTCCAATTCTTCCTTCTCAGAACCCCCCAGCACACGTGTGACCCGCCACCCCGTCTCTGACCATGAGGTCACCCTGAGGTGCTGGGCGCTGGGCTTCTACCCTGCGGAGATCACCCTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACAGAGGTTGTGGACACAAGGCCTGCAGGAGATGGGACCTTCCAGAAGTGGGCGGCCGTGGTGGTGCCCTCTGGACAGGAGCAGAGATACACGTGCCACGTGCAGCATGAGGGGCTGGCGGAGCCTGTCACGCGGAGATGGGGTAAGGAG a score=6414 s hg19.chr6_ssto_hap7 1195989 156 + 4928567 CAGGAGCCCTTCT-GGAGGCCTTCAGCAGGGTCAGGGCTGAGGCCTGGGGGTCAGGACCCCTCACGTTCCCCTCCTTTCTTAGGGCCATCTTCCCAGCCCACATTCCTCATCATGGGCATCGTTACCGTCCTGGTTGTTCT---------AGGTGCTGTGGTCACT s canFam2.chr12 71498954 165 - 75515492 CAGGAGCCCTTGTGGGAGAACTTCAGTAGAGTTGAGGGTGAGACCTGAGGGGCAAGG-CCCTCACCTCATCCTCTCTTCCCAGAGTCCCCTCCTCGGCTCACCATCCCCATCGTGGGCATCGTTGCTGGTCTGCTTGTCTTTGTGGTCTCTGGTACTATGGTGGCT a score=6594 s hg19.chr6_ssto_hap7 1196301 204 + 4928567 CTGTCAACTCTCACTCTTTTGTAAAGCACCTGTGAAATTGAAGGACAAATTTATCACCTT--GATTGTGATCATGGGAACCTGACTCCCAGCAGTCACAAGTCAGGAGAATGTTCCTGCTGAGGACAGATGT-CAAAAGGACATTTGGTTCAGCTTCAACACATCCTCTTCCCTCGGGTTTTCTGATCCTGACCTGGGTCTGCAGTC s canFam2.chr18 44179151 205 + 58872314 CTGCTAACATTCACTCCTTAGTAAAG-ACTTGTGCAAATGAAGGACAGATTTTTCACCTTTCTATTCTGGCATTGGGGACCTGAGCCCTAGCAGCTGAAGGTAGGGGGAAT-TCCCTGATACAGACAGACCTCCGGGAAGACAGTTGGCCCAGTGCCCCTACATATACTTTCTCTGTGGTCTCCGATACAGCCGTGAGTCTTCAGTT a score=4606 s hg19.chr6_ssto_hap7 1196505 124 + 4928567 ACAGTTCTGGAAAC-------------------------TCCTCTAGGATCTCATGGCCCTGCCTCTTCCCTGGCCTCTCACAGTTTGTTTTCTTTCCTCATATGGAAAAGGAGTCAGCTATGCTCAGGCTTCAAGTAAGTGTGGTAGG s canFam2.chr12 3938965 148 + 75515492 AGAATTCTGCAGACTCACTCTGCACCAGGACTGGGAGCTTCCTCGAGGATCTCCTGGCCCAGCCCTGTGCCCGGCCTCTCACATGATGTTTTCTTCCCACAGGAGGAAAAGGACCAGGCTACTCTCATGCTGCACGTGAGTAT-GTAGG a score=20448 s hg19.chr6_ssto_hap7 1196632 509 + 4928567 GGGAGAGTGATTCCTGAGATCCTTGGAACAGTGTAGACAGGAGCCCATGGGGGAGGTCA-CCACCC--CACAATTCCTCCTTTAGTCACATCACCTGTGGGCTCTGACCAGACTTTGTTTTTGTTCCACCCCAAACAGGAACAGTACCCAGGGCTCTGATGTGTCTCTCAAGTCTTGTAAAAGTGACACCTTAGAGGGCCTGAAGTGAA--GGAGGAGTTGGGGCAGATGGGACACAACTAGGCTCTAGAGAGTCTTTGATTTGGAATTTTTCAATGTGTGGTGGGCTGTTCAGTGTCACCACTTACCATGACTGACTTGAATTTGTTCACGACTATTTTCTTTCCAAGA---------CTGCCTTGTGAGGGACTGA--GATGCAAGATTTGTTCATGGCTCCAC-TTTGAGACTTCAAGGGCCTCTGTTTTCTCTTTCTGCCAA-GGCATCTGAATGTGTCTATGTCCCTGGTAAC---ATGTGAG-AAGTGGAGAGACCAGCCCACCCTCATGTCCACCATGACCCCt s canFam2.chr18 44179496 510 + 58872314 GAGGGAGTGATCCTTGAGA-CCCTGGGATAGTATAGATAGGACCCCATGGGGGAACTCAGCCACCCTATATAGCTCCTCCTTTAGTCTCATCTCTTGTGGGTTTTGACCACATCCTG---TTGTTCTACCGTA------GGCAGTGCTCAGGACTCTCAGATGTCTGTCATGGCTCCTAATGGTGAGACCCTGGAGGGCCTGAAGCCAAGGGGAGTGGTTGGGGCAGAGGGGACATGACTGGGTTATGAGGATTCTTTGAGTGGAACATTATAAGCATGTGGAG---------ATGTCAGCACTTAACATGATTGACCTGAATTTGTTCATGACTATTTTCTTTCACAGAGCAAGCCAGCTGCCTTGTGGGACTCTGAGTGATGCAAGATTTGTTCACACTCCCACTTTTTTGACTTCAAGAGCCCCGGATATCTCCATCTGCTAATGGTGTCTGAAAGTGACTCTGTTCCTATTAGCATAATGTGAGCAGGTGGGGAAATTGGCCCACCTC--TACTCATCATGTCCCTT a score=85953 s hg19.chr6_ssto_hap7 1205571 2435 + 4928567 TGACTACCAACTTATTTGGCTGAGCCATGGACATGGAGCAGATGAGCATTGCCTTTACCTACGACATGCATGAGGATTCTGAGACCTACCTGCAGCAGTTAAGCCCCACACCCAGAGGGACA-CCCACTCTCCCACCTCCTTACTTTCTGTATCTTTTCACACTTTACATCCTCATCCTTCCCTCTGGGAGTCTTCCCTCTTTGGG-TCTTCTAGTCCTATCCTACCCTCTATCCCCTTCCAGGTGGCAC---------------------AGGGCTTGACCATCACATTTGTGTCAGGTGACAATAATGCCAGAATCCTTAGT-ATGGGCAGCATCGCTTTGAGGTGAGTGATAGTGAGCTGCCTGATGAGACAGACATCTCCTC-CACAGTGAGTGCTGATGTCATGAAGC--------CCTTTAGGTCTTCCTAGTTCCTTAATATGTTTGTCTTCAATCCTGTCATGGGCAC---------CTGATGCATAATGGACACTTGGCTGGTTCATGCACCCTGGTCTTTGATG-CTGTGTTGGGATGTTTTTCTGACTGTTATGTGGGGTATCTGTTTTCTTTCATCATATTACATCTCTTTCCCCACTCCCAAGTCTGTCCTGTAAATCCACACAGTACACCAGCATCTGCATGT-GTGCTGTGTG---------TTCCTGCCTCACTTTTTCCTTTTCATGCCTTATTCTCACCATGCCACATTTTCCCCTCAGTTGAACAGACACAGTAGGGGACT----AGCCCATTCTGGCATGTGAC-------CACGCTTCAGGAGGAGACTGCAGGTTGGGGGTGAAGGAGACTCTACTGAC-CCCACCCCTGAC-ATCCTCTTCCCCCACCCCCTGGCTTCCGTCCTCTGCCTCAGCACCACTCCTGAATCCCCATTCCT--GATTGTCAGAA------------TTTTTAACATAACTAAAAATGAAACACAAGTGCCTCTGCATTATGTGTGGGTGCTCTCTCCCTTTATTTTATTTGGGGTGAGGTTATTTTAGGGCATGGCCCAGGGTA----AATTCCTGCAAGGCCTTGGTGCCCTGCTGTG------AGGTCA----------------------AAGAGGGATGGGACTAAGACTGCAGAG--------CCCTGGCTCCCCCACTACCTGCC--------AATTGCCAGCCCTTTGTGGGGTCTTTTCTGCTTTCTCTGGCCTGGGAGATGCTGGGGTGTTTCTGATCCTGGGGTTCCTG-GGGGGTGGTGCACATTAGTTCCAGGCATGGAGGGTGCTGTGGGCACTGCTGGGAAGCTTGGCTGTCCCCTCCCAGGCTCTCTCCTCCCAGGCTCTCTCAGTGCCTCCTCATCTGTTTCTTTAGCTTTTGGATCTTGAGCACCAGGGCCCGGGCCCCC---ACCCACTCCTTCCCTTCCAGGAGGGCCTGGTCCAACTCCAGCTGCTGTGCAAGCAACTCCTCGGCTTGGGCCAGCTCAGCTGTGTGG-GGGGCTCAGGGCCCTGGTCAGAGGGAGTAGA--GGAGGGAGCATCAGCCAGGGTAGAGGGGTTGAGGCCCTTGGAACCTGTGTTGCAAGATCTCATGGTAAGTGAGGAATTCGACGTTGT---TTTCTCTTTTTCCAGCCCATTAGCT--TAAGTCCACCTGTACTGAGAATCCCAGGGAGCAACCTGTCTTGGGCATAGGCCTCTGGAGGGCAGATACAGATCCCTGGCTCAGGGGCTATATCTGGATGCCTTG----AATGAGGATATGGGGTCACTGGAAAGAGACGACCAGGTGT--CTGTCCCCACTAATAAATGATTAACTGTTAGATGAGGGGGAATTCCTGTTCAAGGACT--CTGGACTGTGCTGCTCTGGGCAGAGGGAGGGCTGGAGAGAGGGAGCCCTGAGGGCTGGGTTGGGGTGGGGGTGGAA--------GGAGCTGAGAGTTGGAAATAGGCAAAAAGCTGCAGAGGTGAGGGTA--------GTGCAGG---------GTGGGATTGAGAGAATTTCCCCCGACTACTGTACTGATCCCTTCATCTCCTCCACCCGAGCACTTGGAGCCACATA-----GGGGGTGGCCTCATCTTCCCACTGTCCCAGAAGCTGTTCTGCCCTTCCATACTTGCCTTGGAGTTTTGGGAGCAGCATGTTTATGAGCCCTGGGGTGCCAGGGACCAGGAGGGCAGGAGGAGGTGAAGAAAACAGCACCGAGAGAGCCAGGGGAGTGGGAGGACTGTGGCAGGTGAGGCAAGGAGCTGTCTGAGCCGCTCAGCAGCCTCCAGGA---GGC----TCTCTCCAGGCC-CGTCTTCACTCCAGTGCCTGGCCCTACCCAGGCCCCCACTCCTACTCTG------CTCTCAACCTGGCCCCAGACAGGATCCCAAACAACTCCTGTTCCTAATGTGAAAAATGTTTCTGCCGCTTTAGGCAGAACTTGCTTTAGAGCACTGGCACAGCCTTCCGCAGGTCGTGTGTCTGATTCTCTTGGCACTGtgc-cttttttcacttattcttctgcaaggaaggaattatatcactggttgggtgaggcaactggctcagatgggttcattgaG s canFam2.chr12 71478998 2421 - 75515492 TGGCTACCAACCTATTTGGCCGAGGCATGGACATTGAGCGGGTGAACATTGCCTTCAACTATGACATGCCTGAGGATTCTGACACTTACCTGCATCGGGTAAGCTCCACACCCACACGTGCATTCCAGTGTCCCCTCCCCCTGATTT-TGTATC--TTCATACCTGATAGCCTCTCCCTTCTTTTTGGATGTCTTCCTACTTCGGGATCTCCCAGGACTAT-----CCTCTGTCTCCTTCCAGGTGGCCCGAGCAGGCCGGTTTGGCACCAAGGGCTTGGCCATCACATTTGTATCAGATGAAAATGATGCCAAGATCCTCAATGATGTGCAGGATCGCTTTGAAGTCAATATTAGTGAGCTGCCAGATGAGATAGACATTTCCTCTTACAGTGAGTATGGATCTTAAGAAACTGGCTCAACTCTTCAGTC-TCCTTGTTCCTTAGTGTGTTTGTCTTAAATCCCATCATGTACACAAAGAGCCTCTAGTGTGTAACAGGCACTTAA-----TTATGTCCTTTGGATCTTGATGCCCCTGCTGGGATGTTTAGTTGATCTGTATG-------TCTCTTTTCTT--AACAAGCTAGTTTATTTTTCCCTACCCCCAGTCTATCCTTTGCACCCACAAACTACA--GACATCTGCATGTAGTGGGGGGTGGGGGCATGTTTTCTGCC-AGCCTTGCCTTTTCCATGTCTTG---TAATTGTGCCATGTTTTCTCTCCAGTTGAACAGACGCGGTAGAGGACTTACCCACCCATTTTGGAATGTGACAGTCTGTCCCTCTTCAGGAGACGACAGTAGACATGGGGTGAAGGAGACACTACTGCCACCTACCCGTGACAACCCCCACCCCCCACCCCATGGCTTCCCCCTTTTGCATCACCACCACTCCTGAATCCCTGTTTCCTGAATTGTCGGaaattttttttttttttttaaCAAAACTAAAAA------ACACATGCGTCTGTGGTGTCTGTAAGTGCTCCATGCCTTTATTGGGTTTGGGGTGAGA-----TTAGGTCATGATTCAGTGTATATTCATTCTTATAAGGACTGTGTGCCCTGCTGTGGGGCTCAGGTCAGTTGGGAGGGATCAGAGGGGGGGAGGGGGATGTGACTAAGACTGCAGAAGCCATTGCTCCTTGCTACTTCAATTTCTGCCCTTTGTGAAAGTGTCTTCCCttttttttttttttttttttttCAGTGGCCTAGGAGGGGCTGGGATGTTTCTGACCCAAAGGCCCCAGTGTGGGTGGTGTGTAGTGTTTCCAGTGTTGGAAGGTAAAATGGGAACTGATGGAAAGTTTAGGCGT------------------CTCCTAGGCTCTCCCGGTGTCTCCTCATCTGTTCCTTCAGCTTCTGGATCTTGAGCACCAGGGCCTGGGCTTCCCAAGCCCCTTCTTGCCCTTCCAGAAGAGCCTGGTACAGCTCCAGCTGCTGCTCCAGCAACTCCTCAGCTTGGGCCAGCTCAGCTGTGGGGCGGGGCCTGGGACCCTGAATGAGGGGGGCAGAGGGGAGGGAGCATCAGCCAGGGCAG-GAAGCTGAGGC--------------TTGCTGGA-----------------AGTCCGGTGTTGTGCCTCTCACATTTCCACCCCCTTTTATTAATAAGGTTCTCTGTACTGTGAAGCGAGGGTAGCTTCTGGTCTTAGGCATAGGCCTGTGGGGGGCAG-------TTTGCGGCTCAGGGGTTA-AACTGGACTCCTTGTGCAAGGAAGGATATGGAG--------AGGAGAGGACTGGCTGTCCCTCCCCCCACCAAGAAATAATTAACTGTTAGAGGAGGGGAAATTCCTGGTCAAGGACTTCTTGGACTCTGCAG--------GGAGGGAGGGCTGTGGGGAGAGAGCCCTCGAGGT----GTAGGGCGTGTGGGGAAACTGCTGGGGATCTGGGAGTTGGGACTAGTCCAAGGACTGGGTTGGGGTTGGTATCTATTTGGAACAGGCCTGTGAATATAAGATTAAAGGGATTCCTCC--------------ACCCCTCTGTCTCCCT-------ACTTTTGGTGCCACTTACCCTTGGGGGTGACC---TCTTCCCACTGCTTGTGGAGCTGGTCTGCTCTTTTGTGCTCGCCTTGGGGCTCTGGGAGCAGCACCTCCAGGAGCTCTGGGGGGCCAGGGGCCAGGAAGGCAGGAGCAGGCGACG---GCAGCAACAGGAGAGCCAGGGCAGAGGGAGTACCATGGCTGGTGTAGCAGGGAGCTGTCTGAACTGCCCAACAGCCACCAGGAACTGGCTCCTTCCCTCCAGGCCTTGGCCTCGCTTCAGTGACTGGCCCTGCCCAGGGCCCTGCCCCTAACTTAACCTCCCTCCCAACCTGGCCCTAGACAAGA-------------------CTGATGTGAAAAA-GTTCCTGCCAGTTGAGGCAGAACTTGCTTTATAACA----------------------------------CTCTAAAAACTGTTCTCCTTTCTCA------GTTCTGCAAGGTAAAAGTTACATTGCTGGTGTGCT--GGAAACTGGCTCAGAAGGGTTTTTGGTG a score=5848 s hg19.chr6_ssto_hap7 1208013 151 + 4928567 CCGCTGGGCAAGTGTCTGTCGGGGCCAGCTATGGCCAAgatgtgtccaaggctctatagctagttggtggaaaggcctggagggttcatattcaggtccacctaacttgaaaactta----tattGACCTTACTTAAGTACTGATTCCCCCTTTA s canFam2.chr12 71482363 149 - 75515492 TCATTCAGCAAGTATCTCTT-AGTCCCTCTCTGGGCCAGATACgctcaagg-tctgcagctggttggtgggaaagcctggagaattcattcccaggtctacctga----aaagctcagatctattgactTGGCTGAAGTAATGATTACCCCTTTA a score=17548 s hg19.chr6_ssto_hap7 1208518 602 + 4928567 TTCCCTTTCTCTCTTCCTGCTGGCCCGGAATGACCTTGTTTCTTGCCCCTGTCTAGCCCTGCATGCTGCAGGGGTTTGCCTTCTCTGGTAGGTCTGGGAACT-TTGCATCCTTGTAACCTTGGCTCCTG----GCATACGA-CACTGGTA-------CCAAGCTCTGTTGGACTAGTGAGCCTCCTCCCCACACACCTCCTGAACTAGAACCAAAGCTCTGTGCATGCACCGTG--CATGTGTGAGCCAATGACAAGATGTTGTCTTCCTGCAG-GTGTTCTGAAGGAATGTTCTGTTGTGACTGGAGGACACAGCCACGGGCCCCCCAGGCAGAGGTGGCTCAGAAGGGAGTGGATGGCCCTGGTTTTGATCATCTGGG-GACAAGAAGGTCCTGAGATAAAAACCCATGTTTTGGAAAACAAAACTGCCTGAGACTGAAAAGTGGCTAACCAATTCGCTA--TCTGGGACATCACTGCACACTGGGATGGAAGATGGCTTCTGCCATGGTGTAG-GGTCCTGGACCTAGACAAAGAGGCCTTCCTATGGCTCAGTGCTTCTGAAGCACCTttaaatgaggc----------------caaagacctcatgttcatgattagctgacttgttcccac s canFam2.chr12 71482512 592 - 75515492 TTTCCTGTTTCTCTTTTTGCTGGCCCAGAATGAC---ATTTCTTG--TCTGTTGTGCATTGCATGTTGTAGGGATTTGCATTCTTTAGTAGTTTTGAGCACTGTTGTGTCATTGTACCCTTGGCTTTTGAAAAGAATGTGACCACTAGTAATCGATTTTGAGCTTTGTTGAACTTGTGAGC--CCTCACTATAAA---TCTGTAGTAAAACAGATGTATGATGTGAGCCTTGTGTACATGTGTTAAC-----------------CTTTTTGCAGTATATTCTGA---AATGTCC---TGTGGCTGGAGTGTATAGTTCC-GTCCTTATGTGTAGAGGTGGCTCAGAAGGGAGTGGATGGTCCCAGTTTTGATCATCTGGGAGAAAGGTAGGCCCTCAGAAAAA----TGTATCTCAGGAAACAAGATGGCTGGAGAGTGGACAGTTGCTAACCAGCTCACTGTTTTTGTGACATCATGCTGAATTTGGTGGGAAGATGGCCTCTGCCATAGCATGGAGATCCAGGAACTGGGAAGGGTGACCTTCCTGGAGGTCAGTGGCTCTCAAAC--------TTGGGGCAGGGAGAGTTGAACCACCAAGACCTCACATTCTCCATTAGCTGACATGTTATCAC a score=18097 s hg19.chr6_ssto_hap7 1209120 445 + 4928567 tcagtggaaaaaaaacccagaacttttgcaaaattttaggagagagggatttccctcttgtctcttagtgctacggttatgcatgactcatacttgaattgcaatgtgtacacagcttaaggacttaactattagaatacaagaggcccaaactactgttgttatagatatgtaaaactatatggtataaggttaaacaacccacaactaattaacagtgaagataaattaactaca--ttgcaaatttaaaacaagattagcagccttttagaaaaaaaaacaaaacacatgggaggttgcaaaggcaatctaaatgatactctaataaaa----atccttcatgaaaat--gacatttcaaccatctgAG--TTTCTGCTTTAAGTTATGAACTCCAAAATGGACTAACACCCAATAATTTACAGTAGGGAGGTCTAAGCCACAAAGAAAGGT s canFam2.chr12 71483287 432 - 75515492 TCAGTGGAAAAAGAACCAAGAACTTTGGTAGGATTTTGGGGGATGAGAAG---CTTCATGTTTCTTAGCGATAGGGTTATGTATGATTCATATTTGACTTG---TATATGTATGGCTTAAAGTATTAGTTATTGGAACATAAGAAGCCCAAACTA------------ATGTGGGAAACTATCCAGTATAAGGTTAAAGAGACTATAAGCAACTAATATTGAAGCTAAACTAACCACCATCTATAAATTAAAAGCAAGATTTGTAGCCTTT-----AAGAAAATACAGCAGATGAGACTACTGTAGGACAATCTAAATGATGCACTAATAATAAAGTATCCTTCCTGAAAAGTAGGGATTTCTACCATCTGAGTTTTTCTATTTTAGGTTATGAGCTCTAAAATGGATTAACCTCCAATAATTTACAGTAGATATTCCTGAACTCTAAAATAGAGT a score=23093 s hg19.chr6_ssto_hap7 1211462 842 + 4928567 acatccaaccctccttccccattcttatctcagctgacaaccttggttcctacctcactgagaaaactgaacacattagaagacagattc---------catcaccatctgctcatgcatttgcagctgcaac-acatgtcaggtgttttaccatgttggggactgttgtgggtaaaccattctgctccc--agccagagccaatccctcttctggtgccccaaacgtcatcccttatcatctacttaaaggtgtcagttcatcaattaatacctttttttc-tctttatcatcaacctttttcctctctccccactggatcattgtggcagtcatgagaatgcacatcccagcccctcagctagagtaagcagaattga-tagtggcctcaacttttgaatcctgaaacctattgccacatttgctctgagaccacacctgccccctgtcttttcctgccaatgactgaggaaagcagggcagaaactaaggcaggaacatttcttctctgaaggctgactgaagctctagggcttcctgccacgcttactgaacttctgttagcctgcacagggtctaggatgcttccagctgaccttcctgcactgtttacctcactggggttcagagttgctttgtggtctgatgacactcccagcattttccgtctgtgtcctgaatttctctcataactatttcctctaataaatcc-----ttgcacattg-aatactgtattggggtctgctcctcaggggaccctaactaacacaAGTAGTATGAAGGGTGATCCATGAAAACAGGCA-AAAATGAGAATT----TGAAAAAAGCTTGCCCACTGCCTGGCAGGCCAAGAGGATGCCA s canFam2.chr12 71597881 839 - 75515492 acctccaacacccagccccc--tcttctctctgctaatgatcttgtttcctaagtcactgaacacacggaacacattagaggacaatttcacagatttctcccaccatctactcatgtcctagcacctgtacccacttgatgggccttcttgtcctttag-------cacaggtgacccatccagttgtgtgagccagagccagtccctccactgctgcccaacacctcatcccttcttatcgacttacaagtcctggtccagaagttacttccccgttaacattttcctcatcggtgttggtcctc------aactagatcattgtggtggccgtgacaatacacgaccctgactctcagcttgaggaagtgtaactgagccatggcctcggctgt-gtgctctcaaatctgacgccatctctgcccagagatgacacttcctatggaattcctccagccaatgcttgggaacagcaagg---aaactgaggcaggactcttcctcttctcccggctgacctgggctct-ggactccccgacac-cctggtgagcttgccttactctgcactgggtctagggtgcttccagccaacctcccttctctctctccttccctcagcttcagactggcattaagatctgatgtc--tcctagc-ctttcgggctccttccccatgtcttctcacaaggagttctcctaaccaatcCAATTCTTG-GCATTATCATGCTGTACTTGTGGCTGTTCAT-ATGGGACACCAA--AACACAAGTGGCATCAGGAATGGCCCAAGAATGGGGGCACAAAATGGGATTTGGGACGAGATGAGCTCACGCACTGTCTGGCAGGACAGGAAGACACTA a score=7479 s hg19.chr6_ssto_hap7 1221261 182 + 4928567 aaGGACAAGATTAAAATGTTAAGGAAAAATAATTAGATTAAA--AGCCTTTAACTTA-AAAATCCTGAAACAATA----GTTTGAATTTtgcttttaacatatatgcaaatccttt---aatactgctcccttccagaggtgcagcttaat-tccctctcttgagtgtgg-cttggacttaatgatgcacttct s canFam2.chr12 3982361 194 + 75515492 aaagagaaatttgaagcattcaaggaaaataattgggtgaaagaagcatttgatttacaaaattctgaaataatatttagttTTGATTTtggttttaacaggttcacaaattctttgacaacaatcctcctttccagagatggatcttaatgtcctcctcctgagcatggacttgcactgaatgattcacttct a score=17198 s hg19.chr6_ssto_hap7 1221813 520 + 4928567 actgatagagcaatgccgacataacagcttgtgactctgggtgtag-aacctaaaactccctgtggcttccacct-------------------------tctctctctctgtctctgg----------------gatcatgagctctggggaaagtcagctgctgtgccatgagcagccctgcaggaaggtccatctggctaagaattgaggccttctgggactcaattacaatgaact-aggccttttcc-------------------aacagccatgtgactgatccatgtttcatgtgaatcc-tcagccccagtgaagccctcagatgatgcaggcctagactgacaac---------------tggactgcaaccttgtgaaaggcccttagcaagaagcactcagggaaa-----cttctggattcctgacaattggaaactgtgggagatgatcaatatttgttgttttgaaatggtacattttacataatttgttatgcaatagtaaataactaatacaT-TTTCACAAGACAGGATGTATTATTACATGTTAATTTGCATTTGCTCTAAATTTATCATCATCATTATTATTAt s canFam2.chr12 3982556 601 + 75515492 actgatagaa-aaggctgatgtgatggtgtgtgacccaggacctaggaacataaaacacattgcagcttctacctggctttttctctctctttttgtctgtctgtctctctgtttctgtatctgtctctgtctctggttacttgcactgggggaag-aagctacctagttattagctacctaatggaaaagtccacacagctaggaactgaggccccttgggaccatctgggaaggaaatgaggcctcttcctcatttcctcatttccctcaacagccatgtgagggagccttatgtcctaggaatccctcagccccagtcaagccatcagatgatgcagtcct-gtctgacaacccagtcctgtctgacttgactgcaacccagagagaggccctgagacagaagcactcaggtataagcctctcctggattcctgaccctgggaaactgtgggacacaatatatatttgttgttctgagctgctatgctgtggataatttgttaggcaccagtacataactattataGAgtccaaagaagagaatgaagtattgcactttaatttcgattggctctaaattaactatgatattaaacatcat a score=9199 s hg19.chr6_ssto_hap7 1222650 274 + 4928567 TTAGTTTTAAAAGGTAAGGAGAATTTCCGTGGCT----GAAAAGGATGTATTTTATTACCGTTCACAATGATTACTTTACTTGAACTTCAATTTGCAACTGTGTCCTAAGTGAACACAAAAAGAAGATCCAGCCCTtgctaggctgattctatgatggcct-caacaacaagctcctggtcattcaccttccccccattattcaaccaa-ctctaatgtaggtgctgctgtgaagggatttaacagatataattaagggcctcaattagttgactttagg s canFam2.chr12 3983160 277 + 75515492 ttggttttaagatttaagaagaatatctatgtctaagggaacagaatgcatattattaccattcacaacaatctatttatttggagtttgatttctgacggtaaaccaattaaaca--aaaggaagaagcaggctGTCCtaggcagatgctaagatggcctgccataactaacctctggttattcatattcttccagttgttggatcaaacactaatccaggtgctagcgtgaaaggactttgcatatgcagtgaaggttc-agatcagctgcatttaaa a score=9564 s hg19.chr6_ssto_hap7 1222944 366 + 4928567 ctgtcctaatcaggtgagtccttgaaaggactgggttcttcctgagcatagagattcacagtgtgagagggattcagcatgaggggtttcctccactgtgggctttgaaaatgaaggggctgtacagggaagaacgctggtgggcatcaggaattgagcgcagccctccctgttctctacattgacagccagcaaggaa-cgcggacctcagtcttacaactgcaagaaactgcattctgccacc---tctgtataagcctgaaggaggat-------tcaaaatgaaaacacagctttgggaagcccggaacagagattccatccacatcatgcccagatttctgactca-ggtactataaacagataaatgggtgt s canFam2.chr12 3983718 351 + 75515492 ctgacctaatcaggtgagcccttaatagcacagggtgcttcctgagtgaagggactggaagagtgagcaggattcattgtgagtgg-------------aggctttatgatggaaggggct-cccggcaagcaatgctggtggcca-caggagctaagaacagcatccc-----------actgacagcgtgccaggaagtggagactgccgacctccaactacaagaactggaattctgctaacagatctgtacaagcttgtagggggacctcaagctctagttgcaaacactg-tctgtgacatgctgaggagaagacccctcagcatcactcctggactgctgacctacagaactgtgcacatacacatgggtgt a score=6966 s hg19.chr6_ssto_hap7 1223622 262 + 4928567 gggtgttgtttaaagtca--atgtttgtgat-aatttgttatgcaatcttataaaattcatacaCAGGCTCAACAGAC--------------TCGGAATGAATTGATAT------------GCACACTAGTTACATAAAATAAAATATTTCTTAATTTTTCAGTGTTTTACATTTTATAACTTTCT-GTGATGCAATTTAATACCT-----TCACATTTCattcattcagtcaacaaaaattaatttagtgcctaagatgaaccaggtATGCCCTCATATGCTCA-----------------------------------------CGTGCCTGACAT s canFam2.chr12 3984069 327 + 75515492 ggttgt------aagtcactatgtttgtggttaatttgttatgcagcaatagaaaaccaccacaTAGCCTCAATGCACATCACATTTTCCCAGTGGAATGAATGAATGTATGAATCGTCGTGCACACTAGTTGCATGAAATAAAAT----CTCATTTTTCATGTATTTTCCATTTTGTGATTTTTAAGTGATGGGATTAAA-ATCTAATAGTCATATTTCattcattcattcaacaacaattaatttagtgcctactctgcaccaagaatggctttctacactaggggtacagctttcctcaaagtagcccaaagcacctgtgcttcatgctttacat a score=1303 s hg19.chr6_ssto_hap7 1223884 28 + 4928567 TCTAGAAGCTTCACAAGACCgaggtgga s canFam2.chr12 71489114 26 - 75515492 TCTAGAGGCTTCctaag--tgagatgga a score=18167 s hg19.chr6_ssto_hap7 1223912 706 + 4928567 gccactggagtgttttaggtgaggaaatgacacactctgactcacaggagcaggaccactgt-----------ggagagaacagTCAC---GTAGCAGGTAATGGGACAATGCTAGAGCCACAATTTAGAAGTGACAGGGTGGTGGGGACTAAGGGGAGAGGAGGGCCTGAGGGATGAAAGGGACAGAGGGAAGGGCTGGAGAAGCAGGAGGTTAGGAAAAGGAGCAGAGGGAAGGAATTGGAAAGCAGTAGAATTCTTAGGTTTAAACACATTGTTTTATAGATTTTTATTACAT-------CCATCTACAGAGCCTCGCTCAGTGTTCTTTGCAGTTGGCCTTTAATACCTAATGTAGGACTGCCTAAAAACTAATG--TTTTTTATGTTAATAAGGTTTAAAAAATACTTAGTGTTCCTTCTTTGCAGTTGGCCTTTAATACTATATTTGGGACTGCCTAGAAACTATTTTTTTTTAATTAATCAGGTTTTAAAAATACTAAGTGTTCCTATAAGATATACATACCACTTAGACGTGAATACTTCCTAAAAACAGGCAGCGCATGAGCACTGCTGAGGGGCATTGTGACTGCATTGAACACTTGCAACTGTGAGGTGAATAAAGTCTGTACTGGCTCCCGGTTGCAACATATAGTAACAG--TGTGCTACTTTATATTGAGGAGATGTCTTGGACTCACCCAGTAACTCAGGGCTGTGGAATGAAGGT s canFam2.chr12 71489328 621 - 75515492 gcccctgaagcattttcagtgatgaaatgacacaacctgactcatatcagcaggatcgctgtctgtcccaggtggcgagagtggccttagggtagcaagtgttggagtggcagcagggccccaatc-aggagTGAGAGGG-GGTGGAGACTC--GGGATGAGAGGCCCTAATTGATGA--GAGATGGAGAGAAGGGCTGCAGACCCAGGCGG--AGGGAGAGAAGCAGAGGTGACCAGTTTTACAGCAGTGGAATCCTCACATTTAAATACGTTGTTATACAGCCTTTTTAAAAATGGAATCTCTATTTCCAGGTCTTAGCAAGATATTTTTTGCATCTAGAATTTACTATATTCTGTGGGGCTGCCTGAAAATCAGTTGCCTCCTTATGCAAATCAG-TTTAAAAAATGTCTAG--------------------------------------------------------------------------------------------------ACGAAATATGTGCACTGCTTAGATGTGAATAATGCATAAAAAGAGGCAATGCAGGAGCACTGGCGAAGGGCATTTTGACTGCATGGAACG-TTGCAAATTTGAGGTGCTTCAAGTTTGTACATGCTCCTGATCGAAATGTATAGTATCAAACCATGCTTCCATGTATTGAGGATATGAGGGGAACTCAC--AGAAATTTGGGGCTATGGAATGAAGAT a score=4013 s hg19.chr6_ssto_hap7 1224618 231 + 4928567 AAATGTAAAAATCAAGCGGGAGTCACAGATACATTGTCTGCGAAAGTCAAACTTACTAGCTTTGTGAGTCCTGTTGTAATGCT-TTCAGACACATTTATATATCAAGGGGCCAAAGTTACATTTTTTACCGATTAGATTCCTGATCATTTAGGGGTTGCCAAGATTCTGCTACCCACTGTAGTTAATAAACAAAGAGAAAACTTGTCTCTAT-------TCTATCTCATGTACTCAGGC s canFam2.chr12 3985571 213 + 75515492 CATTTTAAAGCACAA-----AAACTTAAAGTCTTGGCTTGGGAAAGTGAAAATGAC-AGCTTTGG-----TTATTTCAAAGCTGTTTAGGCAAATTTATACAGAAAGGA--TAAAATCACTACTTTGACACATGCGAGTCCCGATCTCTCAGGGGTTGTCAAGATTATG------------GTTAAGAAACAAGAAGAAAACTGGCCTCTGTGAAAATCTCTAGCTAGTGC-CCCAAGC a score=70364 s hg19.chr6_ssto_hap7 1224849 2155 + 4928567 ACAACTTTTCCGGATTTAAAGAAAAAAAAAACCTGTCTCTACGCCTCCATTCCCAGGGCGAGCTGCCTCTCTGGCGGCGAGCTCCCTCTCTGTCACCAAGCTCCCTGG-GGTGAGTTTTTTTCTAGAAGAGTTCAGGGAAATAGGTAAGGAGTGGGAGGCAGGGAGTCCAGTTCTGGGACGGGGATTCCGGGATGAAAAGTGAAGAGGGAAGGGGC----CCATGACGAGGGTTTCTCCCTGGTTTC-TCAGACAGCTCTTGGGCCAAGACTCAGGGAGACATTGAGACAGAGCGCTTGGCACAGGAGGAGCGGGGTCAGGGCGAAGTCCTATGGCCCCAGGCGTGGCTCTCAGGGTTTCAGGCCCCGAAGGCGATGTATTGAT-TGGGGAGGCCCAGGGTTGGGGATTCCCCATCTCCGCAGTTTCTCTTCTCCCTCTCCCAACTTATGTAGGGTCCTTCTTCCTGGACACTCAGGATGTGGACTCAGTTCTCACCCCCATTTGGTGTCGGGTTTCTAGAGAAGCCAATCGGCGTCGCTGGGGTCCCTGTTCCAGAAGTC---CCCGCGAACCCATTGGGACTCAGATTCTCCCCAGACGCCGAGGATG-GGGTCATGGCGTCCCGAACCCTCCTCC---------TGCTGCTCTTGGGGGCCCTGGCCCTGACCGAGACCTGGGCGGGTGAGTGCGGGATCCGGAGGGAAATGGCCTCTGCGGGGAGGAGCTAGGGGCCCG---------------------------------------------CGCACTGGGG-----CGCAGGACCCGGGGAGCAGCGCAAGGAGGAGGGTCGGACGGG-TCTCAGCCCCTCCTCGCCCCCAGGTTCCCACTCCATAAGGTAGTTCAGCACCGCCGTGTCCCGGCCGGGTCGCGGGGAGCCCCGGTACATCGCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCGGCGACTCCGAGGATGTAGCCGCAGGCGCCGTGGTTGGAGCAGGAGGGACCGGAGTATTGGGACCGGAGCACACGGAACATC-AGGCCCGCGCACAGACTGACAAGAGTGAACCTGCCCATGCCGCGCCGCTACTACCACCAGAGCTAGGCCGGTGAATGACCCCGGCCTGGGGCGAAGGTCACGACCCCTCCTCATCCCCCACGGACGTCCCGGGTCCCCCCCGCGAGTCTCCGGCTCCGAGATCCACCCCGAGGCTGCGGGACCCGCCA--------GATCCTCGACCCG-------GGAGAGGCCCAGGCGCCTTTACCAGATTTCATTTTCAGTTTAGGCCAAAATCCCCGCGGGTTGGTCggggcaggggcggggctcggtgggcggggttgacagcgggggcggggcctgggTCTAACAACCTCCAGATAATGTATGGCTGCGACTTGGGGCTGGAAGGGCGCCTCCTCCGCGGGTATGAACAGCACGCCAACGATGGCAAGGATTACATAGCCCGGAACTAGGACCTGCGCTCCTGGACCGCGGCGGACATGGCGGCTCAGATCACCAAGCGCAAGTGGGAGGCAGAAGAATTTGCAGAGCAGATCAGGGCCTACCTGGAGGGCACGTGCGTGGAGAGGCT-CGCAGACACCTGGAGAACGGGAAGGAGATGCTGCAGCTCACGGGTACCAGGGAACACAAGACGTCTCCCTGATCGCCTGTAGATCTCCT-GGGCTGGCTTCCCACAAAGAGAGAAGGA-AAATGGGACCAACACTAGAATGTCGTCCTCTCTCTAGTCCT-GAGGGAGAG---GAATCCTCCTGGGTTTCCAGATCCTGTACAAGAGAGTGACTCTGAGGGTCTGCCCTGCTCTCTGATACAATTAAGGGATGAAATCTCTGAGGAAATGAAGGGAAGACAATCCCTGGAAT-ACTGATGAGGGGTTCCCTTTGAC-----ACCAGCAGCAGCCTTGGGCCCCGTTACTTTTCCTCTCAGGCCTTGTTCTCTGCTTTACACTCAATGTGTGTGGGGGTCTGAGTCCAGCTCTTCTGAGTCCCTCAGCATCCACTCAGGTCAGGACCAGAAGTCACTGTTCCCTCCTCAGGGA----------------------------------CTAGAATTTTCCACG-GATAGGAGATTATCCCAGGTACCTGTGTCCAGGTTGGTGTCTGGGTTCTGTGCTCCCTT-CCCCACCCCAGGTGTCCTGTCCATTCTCAGGATGGCCACATGCGTGCTGCTGGAGTGTCTCATGAGAGATGCA s canFam2.chr12 71490104 2103 - 75515492 ACAACTT---CAGGTTTAAAGAGAAAATC--CCTGTCTCTCCATCTCCGTTCCCAGG--------------------CGAGCTCACTATCTGGCATCCAGTTTCCTGGCGGTGATTTTTCTTTCAGAAGAGTACGGAGAA----GTAAGGAGT-----------AGTTCAGCTCAAGTCGAGGGTTTCCACAAACGTAAGGGACAAA--AAGGGGCTGATCCCTGCCTGGTGTCTGTCCCCGGTTTCCTCAGAAGGACCGCCGGCCAGGCCTCAGGGAGACGGTGAGAGAAAGCGCTCCGTGCAGGTGGAGGGGAATCAGGGCAAAGCCCTGGGTCTCCGGGA-----------------AGACCTAGA--GCGGTGTCTGGGGGCGGGGAAGCCCAG-----------TTCCGTCCCCCGCGCGCCTCCCTCCCCTCTCCCAACCCGCCTCAGGGCCTCCCGCCTGGATACTCGGGACTTGGCCCCAGCGCGCACCCCCATTGGGCGGCGGGGTTCTAGGGGAGCCGATCGGCGTCCCCGGGGTCCGGGCCTGCGGGGCCACCCCTGCCGGCTCTTCGGGTCTCTGG---------AACCTCAAGGATGCGAGTCGTGATGCGCGGCACCCCCCCCCCCCCGCCCCTGCTGCCTTCGGGGGCCCTGGCCGTGACCCTGACCCGGGCGGGTGAGTGCGGG--CGGGAGCGAGGGGACCG--GCGGGCGGGGACGCGGGACCCCGGGAAGccgcctctccgccgcccccggcccctcccgcctccgccccgccccgggcatctcccctgggccccgggccccgcGGCGGGAGG-GGGTCGGGCGGGGTCTCA--CCCGTCGGCTCCGCAGGCTCCCACTCCCTGAGGTTTTTCCACACCGCCGTGTCCCGGCCCGGCCGCGGGGACCCCCTCTACATCTCTGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCGGCCACTGGGAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACGGGGAGACGCGGAACCTCAAGGAGACCGCACAGGTGTAC-CGAGTGGACCTGGACACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTGAgcggcgcgggcccggggccgggg-cACGACCCC----CATCCCCCC--GACCGGCCGGGTCGCCC---CGAGGGTCCGGGTCCGGGCGTCACCCCGAGTCCGAGGCCCCCGCCCCTCCCCCTCGTCCCCGTCCCGAACCCGCGGGAACTCCCGGG----------AGGTTTTACTTTCTCTTTGGAC--------------------------------------TGATTGGCG-----GCCTGTCGGGGCGGGGCCAGGGTCTCACACCATCCAGACCATGTACGGCTGTGACCTGGGGCCCGGCGGGCGCCTCCTCCGCGGGTACAGTCAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACGCGGCGGCGCTGATCACCCGGCGCAAGAGGGAGGCGGCAGGTGATGCAGGGCACCTGAGGAACTACCTGGAGACGACGTGCGTGGAGTGGCTGCGGAGGTACCTGGAGATGGGGAAGGAGACGCTGCTGCGCGCAGGTACCGGGG--CCCCGG--GCCTCCCCGATC---------TCGCCTCAGGCTGAGGCCGTGGGAGAGGATAGGAAGAAATAGAATCCACACCAGTATATGGCCCTCCCATGCGTCATGGATGGAGAGACTAACTCTGCCTAGGTTTTCAGATCCGGTACTAGAGAGTGGCCCTAAGGGTCTGCCTTTCTCCTAGGGACCATTAAGGTCACATTCCCTCCAGGGATGGAGGAGGAGACCATTTCTGAAATAACTGATGAGCAGTTCTTTTTGACTCACTCCCTTTGGGAGCCTTGGG---------GGATTTTCTCAGGCTTTGTTCTCAGCCCTGTACCTCAAGTGT-TTGGAATCAGGCCTCACCTGTT-TGAGTCACTTGGCCTCCAGCCAGGCCAGGACCAGAAATTCCTTTTTACCTCTCAAAAACCTGCCTTCTACACTGGGCCATCTCATCCTAATTCTAGAACTTTCCAAACAAGAAGAGATTA-----------TGTGTTCAGGCTGGTGTCTGGGTTAT-TGCTCCTTTCCCCCACCCCAGTTGTCCTATTCATTCTCAGGATGACCACATGAAAGCTGCTTCAGTGGACCAAGACAGATACA a score=69440 s hg19.chr6_ssto_hap7 1227004 1954 + 4928567 AAGTGCCTGAATTTTCTGACTCTTCCTGTTAGACACCCCCCTCCAAGACACATATGATCCACCATTCCATCTCTGACTATAAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGTGGAGATCACACTGAGCTGGCAGCAAGATGGAGAGGACCAGACTCGGGACATGGAGCTTGTAGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAACAGAGATACATGTGCCATGTGCAGCATGAGGGGTTGCCCGAGCCCCTCACCCTGAGATGGGGTAAGGCAAGAGATTAGTGGAGGGGGGGGTCATGTCTCTTAGGTAAAGCAGGAGCCTCTCT-GGAGAACTTCAGCAGGGTCGGTGCTGGGGGCTGAGGGTCAGGGACGCTCACCTTCCCCTTTTTTCCCAGAGCAGTCTTCTCAGCCCACCATCCCCATCGTGGGCATCGTTACTGGCCTGGTTCTCCTTGGAGCTGTAGTCACTGGAGCTGTGGTTTCT---GCTGTGATGTGCAGGAAGAAGAACTCAGGTAAGGAATGGATGAGGAGTGGGGTCTGAGATTTCTTGTCCCACTGAGGGTTTCAAGCCCCAGTTAGAAGCGTGTCCTGCCTGGTTACTGGGAAGCACCATCCACACTCATGGGCCTACCCAGCC---TGGGCCCTGTGTGCCAGCACTTACTCTTTTGTAAAGCACCTGTGACATTGAAGGACAGATTTATCAC-CTTGATGATTATGATGATGGGGACCTGAT-CCCAGCAGTCACAAGTCACAGGGGAAGGTCCCTGCTGAGGACAGACCTCAGGAGGGCAGTTGGTTCAGGACCCACACCTGCTTTCCTCATGTTTCCTGATCCTGTCCTAGATCAGCAGTTACACTTTCAGGAAACTTCTCTAGGATCAAAGGCTAGGGGGTTTGTTTAGGGCCGTATGGCCCTGACTCCTTTCTGGCCTCTTATAGGACATTTTCTTCCCACAGATAGAGT--GAGCTACTCTGAAGCTGCAAGTAAGTATGAAGTGGGCTGATCCCTGAGATCTTTGGGATATTGTGGTCGGGAGCCCATGGGGGAGCT--CACCCAACCC-CAGATTCCTCCTCTAGCCGCATCTCCTGTGGGCTCTGACCAAGTCCTGTTTTTGTTCTACCCCAGGCAGCGACCATGCGCAGGGTTCTGATGTGTCTCTCACGGCTTGTAAAGGTGAGACGCTGGGGGACCTGATGTGTGGGGGGTGTTGGGGGCAATAGTGGATGCAGCTGTGCTATGGGGTTTCTTTGAATTGGATGTATTGAACATGTGATGGGCTGTTTAAAGTGTCATCCCTCACTGTGACGGATATGAATTTGTTCATGAATATTTTATTTTATAGTGTGAGACAGCTGCCTTGTGTGGGACTGA--GAGGCAAGATTTGTTCACGCCTTCCCTTTGTGACTTCAAAAACCCTGA-CTCTCTTTCTGCAAAGG---CACCTGAATGTGCCTG-----TGTTCCTGTAGGCATAATATGAGGAGGTGGGGAGACCAACCCACCCCCATGTCCACCATGACCCTCTTCCCTCATGCTGACCTGTGTTC--CCTCTCCAATAATTAATCATTCCTGCTCCATAGAGGTGAGGCTGAGATGTCTCCATCTCTGTCTCAACTTTATGTGCACTGAGCTGTAACTTCTTACTTCCCTATTAAA-ATTAGAATCTGAGTATAAATTTACTTTTTCAAATTCTTGCCATGAGAGGTTGATGGGTTAATT------------AAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAAGACATGAGAACCTTCCAGAGTCCACATGTTTCTTATGCTG-ATTTGTTGCATGAGAGGAGAGTAGAT-------GGGGC-----------------TGTGCCCAGTGGGTGCTCAGGCCACCGTGCGCTTTATGTGGTCACTGCTCAGCTGGGTCATCTTTGCTGCTCCGTTGTC s canFam2.chr12 71498678 1864 - 75515492 AAGTTCCTGAATTTTCTGACCCTTCTCTTCAGAT----CCCCCAAAGGCAC-TCTCACCCACCACCCCTTCTCTGACTGTGAGGTCACCCTGA------------------CCTGCCAAATGG-----------------------GATGGGGAGGACCAGACCCAGGACACAGAGCTTGTGGAGACCAGGCCTGCAGGAGATGGGACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCCTCTGGACAGGAGCAGAGATACACGTGCCACGTGCAGCATGAGGGGCTGGCGGAGCCTGTCACCCGGAGATGGGGTAAGG--------------------------------------AAATCAGGAGCCCTTGTGGGAGAACTTCAGTAGAGTTGAGGGTGAGACCTGAGGGGCAAGGCC-CTCACCTCATCCTCTCTTCCCAGAGTCCCCTCCTCGGCTCACCATCCCCATCGTGGGCATCGTTGCTGGTCTGCTTGTCTT------TGTGGTCTCTGGTACTATGGTGGCTGGAGCTGTCCTGTGGAGGAAGTAGATCTCAGGTAGGGAGGGGATGC---------TCTGAGTTTTCTC---------AGCGTTTCAAG-CCCAGGTAGAAGTTTGTCCTATCTCATTTAGGGGAAGTGCTACCCGCACACATGTGCTTGTCCACTCCATTGTGCAGCTCATTGCTACATTCACTGTGTAGTAAAGCACGTGTGAGAGTGAAGGACAAACTCATCCCTCCTGTTGAATGTGGTGAT-GGAATCTGATCCCCAGTGGTCACAGGTCAGAGAGCAAGGTCCTTGCTGAGGACAGACTCCAGGAGAATGGTTGGTCTCATCCTGCTATCTCTTTTCTTCATG-TCCCTGATTCTTCCATAGGTCTGTAGTTAAAGTTTT-GGAAACTTCCGTGTGGTC-CAGGCTATGAGTTTCACCTAGGATC-TCGGGTCATGCCTTCTCCATGGCACCTCATGTGATGTTTTCTTTCCACAGGTGGAAGAAGAATTATGCTGAGGTTGCACATGAGTATGGAGGGGG-TGATCCCTGAAA-CCCCGGGGTGGTACAGACAGGACCCCATGGGGATCTTGGCACCCCCCCCACTAGCTCCTCCTTTGGTCTCATCTCCT-TTGGCTCTGACCACATTCTA--TCTGTTCTGCCCCAGGCAGTGACAGTGCCCAGGGC---------TCTCTCTCTGCTTCTACTGGTGAGACCTTGGAGGGCCTGA--AGGGGGGAGTGGGGAGGGGACTG--GGCCGTGATTGGGTAGTGGGGATTCTTTGAGTAGGATATTTTGAGCATGTGCTGAGCTGTTGAGAAAGTCAGCATGTA-TATGACTGACCCAAATCTGTTCATGATTATTTTATTTCATAGTGTGAACCAGCTGCCTCGTGGGGGACTGAGTGATGCAGGATTTGTTCACTTTCCCACCTTGTGATGTCAACACCCCTGATTTCTCTTTCTGCAAAGGGCATGTCTGAATGTGTCTGAAATATGTTCCTATTAACATAATGTGAGGAGGTGGGCAGACTGGCTCCCTCC-----CCA-CGTGACTCCCCTCCCCCG-ACAGACCTGTGTTCtgcttttgtgttgcttttgtgttgcAGCT-----GAGG-GAGAGCGGGTCATCTCCATCCCTGTCTTTATGTTA----CACCGAGCTACAACTTCTTACTTCCTTATTGAACATAGGACTGTGGATGTGAAATTGTTTTTTCCAGTTCTTGTCATGAGGAGCTGATCAGTTAGTCAGATCTGATCTGAAAGGAGAAGATTCCTAAAGTTTGAGAGAGGAAATAAATGGGAGCACTGAGACTCTTCCAGAACCTGCAGATTTGGTGTACTGTGTCTGCTCTATGTGAGGACAGGAGACGCTGTGAGGAGCCTAGTATGGAGGAGCCTCATGCCCACTTGGTGCTCAGTGCAGCAAGGGTGTGACATGGTCA---CTCAGCTGAGGACTCTCT-CTGCTGTTTTGTC a score=4055 s hg19.chr6_ssto_hap7 1229899 65 + 4928567 CTTGGCCCTTCAGTAGAACCTTGTCCCACCATGACCTGTGATCACAGGGACTTGGATGTCACCTA s canFam2.chr12 71500542 64 - 75515492 CTTGTCCCTCCAGTAGAACC-TGTCCTTCCAGGACCTGTGATCATAGAGACTTGGGCATCACCCA a score=13648 s hg19.chr6_ssto_hap7 1229964 586 + 4928567 CGGCAGTCCCTGCATA----CCAGG---GTCCTTGTA-------------GTATCAAGAGACAAATTTTCAGA-TCTTTCAAGCTCTTGCCCTCTTCCCAGGGCTCTTTCCTCATTGTATTTTCCATCTTTTCTGCAATCTTTTTAAAGGAACCAGATTCTGAAATTTGCCAAGAGGCAGGGTCCCGTAGTTTCTCATCATAGGTAACTTTCTGTTGGAACTCC-TCTTCTGCACTCCTACTCTTCTTCCTGCCCTGAGTTGTAGTAATCCTAGTGCTGGCTCCAATAGAAACTCATCAATTTATAAAGCAAAGTCTAGTTTAGATTCATATGTGGTTGGAAAATTGGACCCATAAGCCTAGGGTTATC-TTTCCTGAAGAGAAAAATATGGTTGTGTGCTGCA----GTGTGCAGGAGAGTTAGTGTggggggagggagggagggagggaggACACACAAGCAGCCCTGGTGAGAAAAGCTCTGGTGGCACTGATGtcagtgtgagatgatgttgttctgtagctgccacaaaaataaagcatttgtcctgaggctacattaataaagatattgcctctagaatagagTGGTTCTCTA---TGAtcattccttca s canFam2.chr12 71500824 560 - 75515492 CGTCAGTATCTCCGCAAGGCCCAGGGCAGCCCCTGTGCACAGGCATCTGTGTATCCAGAGGT-TATTTTCAGACTCATTCAAG-TCTTATCCTCCTTCTAGGGCTCG------ACTGTTCTTTCCATCGTTTCCCCAGTCTTCTCAGAGGAA-CAGATACTG-GATTGGCAGACAGGAAGCATGCTGTAATTTCTCATTTAAAATCAGTTCTTGTTGTGTTTCCATCCCCTGCTTGCCTGTGCT-----CTGCCC-------TAGTGATCCT-GTGCTGGCTCCAATCCAAAGTCAAGGTGTTATGAAGCAGAGTCTCCTT--GGTTTCTCTTCGGTTGGGAGATAGCTGTTGTGAGTCAAGGGTGGTTGTTTTTTGAAAA----------------TGCTGTACGTGGTGTGCAGGA-AGGTGCTGTGAGAGTGGGGAGGGAGGGAGGAGGGATAGG---------ATGGTGAGAGAAG-TATAGAGGCGCTGCTGGCAGCCTGATAGGTCACAGTGCTGGAGCTGCCCCAGAGCAG----ATGTGGTCTGAGGCTGCATTAGCAAAGATACTGACTCTGGAATAGGGAGATGCTCTACACCGGTCACTCCTTCA a score=1001 s hg19.chr6_ssto_hap7 1230550 103 + 4928567 actgacatttgtttctgctaggtatata--acggtttttgcatttagaaagcatcattaaagtaaaaacagaaaaattt-cgggccttgtggtgcatatgttctag s canFam2.chr12 3992093 106 + 75515492 GCTGTAACTGTCCTGTGTCACATGCAGGACACACTGTTTGCATCTGGGCAGCTCAGTGAGACTCAGGTGAGGCAAACCTGCTGGTCTCCTGGAGAGTATGTTCTAG a score=16652 s hg19.chr6_ssto_hap7 1231336 429 + 4928567 GATTACATCGCCCTAAACGAGGACCTGAGCTCTTGGACCGCGGCGGCCATGGCGGCTCAGATTACCCAGCGCAAGTGGGAGGCGGCCCATGAGGCGGAGCAGCAGAGAGCCTACCTAGAGGGCACGTGCGAGGAGTGGCTCCGCAGATACCTGGAGAACAGGAAGGAGACGCTGCAGCGCACTGTACCAGGGGCCACGGGGCGCCTCCCTGA--TCGCCTGTAGATCTCGCAGGCT--GGCCTCCCACAAGGAGAGGAGACAGATGGGACCAACACTAGAATATCACCCTCCCTCTGGTCCTG---AGGGAGAAGAATCCT-CCTGGGTTTCCAGATCCTGTACCAGAGAGTGACTCTGAGGTTCCACCCTGCTCTCTGACACAATTAAGGGATAAAATCTCTGAGGCAATGACGGGAAGACGCAATTAAGGGATAA s canFam2.chr12 71491447 422 - 75515492 GATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACGCGGCGGCGCTGATCACCCGGCGCAAGAGGGAGGCGGCAGGTGATGCAGGGCACCTGAGGAACTACCTGGAGACGACGTGCGTGGAGTGGCTGCGGAGGTACCTGGAGATGGGGAAGGAGACGCTGCTGCGCGCAGGTACCGGGGCCCCGG---GCCTCCCCGATCTCGCCT----------CAGGCTGAGGCCGTGGGAGAGGATAGGA-AGAAATAGAATCCACACCAGTATATGGCCCTCCCATGCGTCATGGATGGAGAGACTAACTCTGCCTAGGTTTTCAGATCCGGTACTAGAGAGTGGCCCTAAGGGTCTGCCTTTCTCCTAGGGACCATTAAGGTCACATTCCCTCCAGGGATGGAGGAGGAGAC-CATTTCTGAAATAA a score=2279 s hg19.chr6_ssto_hap7 1231957 74 + 4928567 TTTCTCAACACCTAttcttttctttattt-tagtttcttttctcctttgttccatcctttttttttcttttttct s canFam2.chr12 71492228 75 - 75515492 tctttcttcctttctttctttctttctttctttcttctttctttctttctttctttctttctttctttctttctt a score=7020 s hg19.chr6_ssto_hap7 1232338 180 + 4928567 tcttccttccctttctccttccttctagccctccctccatctctttcttctctatttccATTCAACCTATCGccttccctccttctttctccctttccttcccc---tccccttccttcttttcttcttttgctttttcctccattcctccttctttctctctcttcctccattttttccttT s canFam2.chr12 71492303 177 - 75515492 tctttctttctttctttctttcttctttctttctttctctttctttctttctttctttctttctttcttt---cttctttctctctttctctctttcttttctctttttctcttctttctttctttctttctttctttctttctt---tctttctttttctttctttctttctttcttccttt a score=5255 s hg19.chr6_ssto_hap7 1232900 381 + 4928567 caggagacatgcacactaatatttatggcaaaaactggaat--cagccacatatacatcaataggaaactagtgaaattgtggtataacc---atatgtaagcc--ttcagcagtaaaaatgaaagaatgacagcctcccacaccacagataact--cctacacataatg-tgcatcatgggaaaataaatgcagtaggaacttgctgtacaggaagcttaaaaaccagcaaaaccaactgatatttgttttggggatatatatatatacatacatacatatatatacacaaatatatatatacaaatatgtatatatatatatatacttattgcacaaatctttgaagaaatacaaaggaataagta-tcacaagattcagcatggAGTCT s canFam2.chr12 3981321 318 + 75515492 CAGAAGACTCGTGCACTAA-GTTTATGGGGaaaactggaataacccccacataaaaataaataggcaaatagcaaaaatgtgatttaatcccaaaatgtaagacagtacagcagtaaaaatgagtgaactaca--ctaacacatcg-ggataagttacctgcatgtaacaacgattcacag---aagacatgtagttgtg-tttactgtacaaggaggt--aaaacaggcaaaaagcaataatattggctttggg--------------------------------------------------------------cacagaaacacttattgta-aaatcgttagagcact-caaaggagtggttagccacgaattcttggacagaggtt a score=16935 s hg19.chr6_ssto_hap7 1233790 654 + 4928567 CCTTCTGGAGGATG--ACTGGGTAGCAGTCCAGGGTAGTTTTACAGTTTCGTGTTTTACACCAGTGCTGGGCACCCTGGTAGTTACTTGATTATAATTCCTTAAAC-AGAGTTTTCCAAATTAAA--------ATATACCTGTTT-------TTTATAGAAATGAAAAAGAAAAGAATTTCAAAGTTCATTGCAAAGATTCTT-------------------------AACAAGAACTACTTACATTGGAAGAAAACCACAGAGAATTGTAAGGAGCTATGTGACAGAGAGGAC-CAGGATGCCATGAAAACGGCCTTGGCTACATATAGGTCATTCGATCCTTGGCTCACTGGCGTC-TCTCTAGATTTTCAATAATACAatgttcaatatgctgtgcaaggtaatttcatcttgcaaag-atttgatgttacatttta-ccacacatacaacggaattaaacttttacagaattggaaatgcacatcattgatcaaaataaatgaaacatgaaaagagtaggaaggaatacccagtgatggaatagcaaatatgaatggaaacag-----aataggactgctaaaaagaaaaaaaaattcagaagcacgtaatagcagtgctatttagaatcatagtggtgtccaaatcacttctatcacatctcattcaataccacaacaaa---agatgttaagtttgttataga s canFam2.chr12 3981639 686 + 75515492 acacctggggTACGGCACTGGGGAGTGGCCCATGG-GGCTTCAT-GTTTCTTGTCCCA-ATTGGGGGTGTGTGCCCAGGTGTTTGCTGTTTCAGATCTTCTGAAACTGGCATTTTTCAAACTGGAGTTGTTTTATATTCCAGGTTCATTGTTTTTAAGGAAATTAAAAATGAGATA---CCAAACTTCATTTCAAGGATACTTGGTAATCCATTGCAAATTGGATCAAagcacaaactgttcacattggaatagagccacagtcaattatcctgagccatgt--tagagaggatacagaaagtcataacaagagttttggctaga-ataggtcatttgatctttttctcgctggcaccgtctattgttttctgata-tacaatgttcaatgtggtgtgcaaggcaattctatcttgtgaaggatttgatgtgtcacattaacctcccattcaactggattcaatacattcagagaatgaaaagcatattgttgctcaatataaattaaac-tggaaatcattcaatggaataaccactgatgaaatagcaaatacaaatggaaatgacagcaaatagagctgt------gtaaaaaatttt----agtgcattgtgacagtgcttttttgaaGTATGTTACTGCCTAAATCTCTTCTACTAAATTTCACTGAAAACAACCATAGAGAGAGATGttaaat--attataaa a score=7501 s hg19.chr6_ssto_hap7 1235615 188 + 4928567 TTAAAAGACAAGCTTAAAGAGTTAATGAAAACTAATTAGATACAAGAAGACTTTGATTTTCAGAAACCTGAAACAATAGTTA----TAATTTtgcttttaacatatattcaaatcctttgatac---tgttcctttctagaggtgcagcttaat-tccctctcttgagtgtgg-cttggacttaatgaggcacttct s canFam2.chr12 3982358 197 + 75515492 tccaaagagaaatttgaagcattcaaggaaaataattgggtgaaagaagcatttgatttacaaaattctgaaataatatttagttTTGATTTtggttttaacaggttcacaaattctttgacaacaatcctcctttccagagatggatcttaatgtcctcctcctgagcatggacttgcactgaatgattcacttct a score=16890 s hg19.chr6_ssto_hap7 1236187 497 + 4928567 aacttatagaatagtgccaacataacagtttgtgactctgggtgtag-aacataaaactaactgcggcttccacct-----------------------------tctctctctctctgaatctgg----------gatcatgagctctgggggaagccagccactgtgccataagcagccctgcaggaaggtccacatgactgagaactgaggccttctgggaacagacaacaaggaacc-aggccttttcc-------------------aacagccatgtgactgatccatgtttcttgtgaattcc-cagccccagagaagccctcagatgctgcagcccctggctgacaac---------------tggagtgcaaccttgtgagcggccctgagcaggaagcactcaggga--aacctctcctggattcctgacgattggaaactgtgggagatgagaaatatttgttgtttcaagct---aagttttacataatttgttatgcaatagtaaataaTACATT------TTCACAAGAGAGGATGTATTATTACACATCAAATTGCATTTGCTCTAAAT s canFam2.chr12 3982555 580 + 75515492 aactgatagaaaag-gctgatgtgatggtgtgtgacccaggacctaggaacataaaacacattgcagcttctacctggctttttctctctctttttgtctgtctgtctctctgtttctgtatctgtctctgtctctggttacttgcactgggggaaga-agctacctagttattagctacctaatggaaaagtccacacagctaggaactgaggccccttgggaccatctgggaaggaaatgaggcctcttcctcatttcctcatttccctcaacagccatgtgagggagccttatgtcctaggaatccctcagccccagtcaagccatcagatgatgcagtcc-tgtctgacaacccagtcctgtctgacttgactgcaacccagagagaggccctgagacagaagcactcaggtataagcctctcctggattcctgaccctgggaaactgtgggacacaatatatatttgttgttctgagctgctatgctgtggataatttgttaggcaccagtacataac-tattataGAgtccaaagaagagaatgaagtattgcactttaatttcgattggctctaaat a score=10359 s hg19.chr6_ssto_hap7 1236990 298 + 4928567 taattataagatattaaacat-gtaacttagttttaaaaggtaaggacaatttccatggct----gaagaggatgtattttatgaccattcacaatgatcactttacttgaacttcactttccaactgtgtcccaattaaacacaaaaggaagaTCCAACCCTtgctaggctgattctatgatggcct-caacaagcagctcctggtcagtcaccttcctccagttattcaaccaa-ctctaatgtaggtgctgctatgaagggatttagcagatataattaagggtctcaattagttgacttta s canFam2.chr12 3983135 300 + 75515492 taactat--gatattaaacatcatctattggttttaagatttaagaagaatatctatgtctaagggaacagaatgcatattattaccattcacaacaatctatttatttggagtttgatttctgacggtaaaccaattaaaca--aaaggaagaagcaggctGTCCtaggcagatgctaagatggcctgccataactaacctctggttattcatattcttccagttgttggatcaaacactaatccaggtgctagcgtgaaaggactttgcatatgcagtgaaggttc-agatcagctgcattta a score=4727 s hg19.chr6_ssto_hap7 1237292 143 + 4928567 gggtttatcctgcttgg-actgtcctaatcaggtgagcccttgaaaggactgggttcttcatgagcacagagacttacagtgtgagagggattcagcatgaggggtttcctccaccaggggctttgaaaaggaaggggctatgg s canFam2.chr12 3983699 131 + 75515492 aggattatcccaagtagtcctgacctaatcaggtgagcccttaatagcacagggtgcttcctgagtgaagggactggaagagtgagcaggattcattgtgagtgg-------------aggctttatgatggaaggggctcccg a score=22637 s hg19.chr6_ssto_hap7 1237759 987 + 4928567 aacgctggtgagcaccaggaattgagcccctcccagttctctacattgacagctagccagaaacaggaacct-cagtcttacaactgcaagaaactgcgttctgccacc---tctgtataaacctgaaggaggat-------tcaaaatgaaaacacagcttttggaagcccagaacagagattctatccacatcttgcccagatttctgacc-aaggaattataagcagataaatgggtgttgtt-------------------------ttGCCAGGC-GTGGTAG---------------------TGTGCA---------------------AATGAACTGATGAATTGATATACACACTAGTTGCATAAAATAAAATCTTTCTGAACTTTTTCCGTGTTTTACAGTTTATAATTATCT-GTGATGCAATTTAAT----ACACTCATATTTCattcattaagtcaacaaaaattaacttagtccctacaatgaaccaggtATCCCCTCATATGCTCAAG-----------------------------------------TGCCTGACACTCCAGAAGCTTCACAAGACCGAGGTGGAGACACTGGAGTGTTTTAAGTGGAGAAATGACAC--TCTGACTCACAGGAGCAGGACCACTG-------TGAAAAGAACAGT--TACGTAGCAGGTCATGGGACAGTGCTAGTGTCACAATTCATGAGTGACAGTGTGGTGGGGACTAAGGGGAGAGGAGGGCCTGAAGGATGAGAAGGATGGAGGGAAGGGCTGGAGAAGCAGGAGGTGAGGAAAAGGAGCAGAGG-AAAGAATTTGAAAGCAGCAGAATTCTTAGGT-TTAAATACATTGTTTTATGGA--TTTTAATACATCCATCTACAGAGCCTAGCAGGGTGTCCTTGGCAGTTGTCTTTTAATACCTCATGTGGGCC---TGCCTAAAACCTAATTTTTTATGTTAATCAGGTTTAAAAATTA--CTAAGTGTTCCTATAAAATATACACAACACTTAGAAGTGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTAGTGAAGGGCATTGTGACTGCATTGAACAGTTGCAAATTTGAGGTGAATAAAGCTTG s canFam2.chr12 3983836 1103 + 75515492 aatgctggtggccac-aggagctaagaac-----agcatcccac--tgacagcgtgccaggaagtggagactgccgacctccaactacaagaactggaattctgctaacagatctgtacaagcttgtagggggacctcaagctctagttgcaaacactgtctgtgacatgct-gaggagaagacccctcagcatcactcctggactgctgacctacagaactgtgcacatacacatgggtgtggttgtaagtcactatgtttgtggttaatttgttatgcagcaatagaaaaccaccacaTAGCCTCAATGCACATCACATTTTCCCAGTGGAATGAATGAATGTATGAATCGTCGTGCACACTAGTTGCATGAAATAAAATCTC-----ATTTTTCATGTATTTTCCATTTTGTGATTTTTAAGTGATGGGATTAAAATCTAATAGTCATATTTCattcattcattcaacaacaattaatttagtgcctactctgcaccaagaatggctttctacactaggggtacagctttcctcaaagtagcccaaagcacctgtgcttcatgctttacattctagaggCTTCCTAAAagtgagatggagcccctggagcattttcagtgatgaaatgacacattctgactcacattagcaggatcactgaccccagtggagagagtggccctgggtggcaggtgttggggtggcagcagggt-gcaat-caggag----AGCG-GGTGGAGACTAAGGGGATGAGAAGGCATGAGGGCTGAGAGAGATGGAGAGAAGGGCTGCAGATGCAGGTG--GAGGGAGAGAAGCAGTGGTAAAGAATTCTAAAGTAGTGGAATTTGAATACATTGAATACATTGTTATATCAATTTTTTATTTAATCTCTAT-TAGGTCTTAGCAAGATATTGTTTGCATCTAATATTTACTGCACTCTGTGGACTGAATACCTGTGGCC----TCCTTATGTT-ATCAGGGTTAAGAAGTAACCTAGATGCCACTAATACCCAAATAAAATCGTCCTTAGGTGCTCATTCATACACACAGGCAACAC-TGAATGCTGATGACGGGCATTTGGACTGCCCTGAATACTTGCAACTATGAGGTGATTAATGGTTG a score=10097 s hg19.chr6_ssto_hap7 1238786 422 + 4928567 CTTTGTATTGAGGAGATGTCCTGGACTCACACAGAAACTCAGAGCTATGGAATGATGGTAAATTTAAAATACTACAAGCAGGAGTCACAGGTACATTGTCTGGGAAAGTGAAACTTAGTAGCTTTGTGAGTCCTGTTGTAAGGCT-TTTGGACACATTTATACATCAAGGGGCCAAAGTCACATTTTTTACCTATTAGATTCCTGATCATTCAGGGGTTACCAATATTCTGCTACCCACTGTAGTTAATAAACAAAGAGCAAATTGGTCTCTAT-------TCTGTCTCATGCACTCAGGCGCAACTTTTCCCGATTAAAAACAAAAACAACAACAACAAAAATCTACACCTCCATTCCCAGAGCAAGCTTACTCTCTGGCACCAAACTCCATGGG-GTGATTTTTCTTCTAGAAGAGTCCAGGTGGACAG s canFam2.chr12 3985518 386 + 75515492 CTTTGTATTGAGGCTATGTCTGGAATTCACAGA------CGGAGCTATGGAACAGAGGTCATTTTAAAGCACAAAAACTTAAAGTCT--------TGGCTTGGGAAAGTGAAAATGA-CAGCTTTGG-----TTATTTCAAAGCTGTTTAGGCAAATTTATACAGAAAGGA--TAAAATCACTACTTTGACACATGCGAGTCCCGATCTCTCAGGGGTTGTCAAGATTATG------------GTTAAGAAACAAGAAGAAAACTGGCCTCTGTGAAAATCTCTAGCTAGTGC-CCCAAGCACACCTGCCTCAGGT-----ACAGAAG-----ACACCTTGTTCCTTCACCAATTGTCCCACAGTCAGCTCTCTCTCTGGCATCAAATTCCCTGAGAGTAAGTTTCCTTCTCAGACAGTCCAGGGGGACTG a score=39225 s hg19.chr6_ssto_hap7 1239208 1083 + 4928567 GTAAGGAGTGGGAGTCAGGGAGTCCAGTTCAGGGACAGAGATTACGGGATGAAAAGTGAAAGGAGAGGGACGGGGCCCATGCCGAGGGTTTCTCCCTTGTTTCT-CAGACAGCTCTTGGGCCAAGACTCAGGGAGACATTGAGACA--GAGCGCTTGGCACAGGAGCAGAGGGGTCAGGGCGA-----AGTCCCAGGGCCCCAGGCGTGGCTCTCAGGGTCTCAGGCCCCGAAGGCGGTGTATGGATTGGGGAGTCCCAGCCTTGGGGATTCCCCAACTCCGCAG-TTTCTTTTCTCCCTCTGCCAACCTATGTAGGGTCCTTCTTCCTGGATACTCACGACGCGGACCCAGTTCTCACTCCCATTGGGTGTCGGGTTTCCAGAGAAGCCAATCAGTGTCGTCGCGGTCGCGGTTCTAAAG--TCCGCACGCACCCACCGGGACTCAG----------------ATTCTCCCCAGACGCCGAGGATGGCCGTCATGGCGCCCCGAACCCTCCTCCTGCTACTCTTGGGGGCCCTGGCCCTGACCCAGACCTGGGCGGGTGAGTGCGGG--GTCGTGGGGAAACCGCCTCTGCGGGGAGAAGCAAggggcccg-----------------------------cccggcgg--------------------------------------gggcg------cAGGACCCGGGTAGCCGCGCCGGGAGGAGGGTCGGGCGGG-TCTCAGCCACTCCTCGCCCCC--AGGCTCCCACTCCATGAGGTATTTCTTCACATCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTTGACAGCGACGCCGCGAGCCAGAGGATGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAATGTGAAGGCCCACTCACAGACTGACCGAGAGAGCCTGCGGATCGCGCTCCGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCCCGGCCCGGGGCGCAGGTCACGA-CCTCTCATCCCCCACGGACGGGCCAGG-TCGCCCACAGTCTCCGGGTCCGAGATCCACCCCGAAGCCGCGGGACC--CCGAGACCCTTGCCCCGGGAGAGGCC-CAGGCGCCTTTACCCGGTTTC s canFam2.chr12 3986271 1170 + 75515492 GTGAGGGGTTCAAGGCAGAGACTCAAGCTCAGCAA-GGGGTCTCCGGGAAGGAAGAC--AGGAAAAATGGCTGAGCCCA-GTCTGGTGTCTTCACTTGGTTTCTTCAGAAAGACCCTGGTCCAGGAGTCAGGGGGAAAGTGTAACAAAGAGCGCTGCACGCAAGATGAAAAGTGTCAGGTCACTCTATGGTCCCGGGGA---GGGCGAGGCTCTCAGGCTCTCAGGCCCC-AGGGCGG-GTCCGGGGCGGGGACGCTCAGGCT-GGGGAGTCCCCACCTCCCCGGGTTTCACTTCTCCGTCTCCCAACCTGGCTCAGGGCCCCCTGCCTGGAGACTCGTGACGCAGCCCCAGCGCGCACTCCCATTGGGTGCAGCGTTTCTGGAGGAGCCAATCAGCGGCACCGGGTCCCGGGCTCGAAAGCCTCCGC-CGCCGCCTCCGCCCCCCAGTCCGGCGGCGACGGCCAGTGTCCCCGGAGCCCGGAGATGGAGGTGGTGATGCCGCGAGCCCTCCTCGTGCTGCTGTCGGCGGCCCTGGCCGTGACCCTGACCCGGGCGGGTGAGTGCGGGCGGGAGCGAGGGGACCG-----GCGGGCGGGGACGCGGGACCCCGGGAAGCCGCCTCTccgccgcccccggccccccgcggcctgggctccccggtccctcccgcctccgccccgccccgggcatctcccctgggccccgggccccgcggcgggagg-gggtcgggcggggTCTCAGCC----CTCGGCTCCGCAGGCTCCCACTCCCTGAGGTTTTTCCACACCGCCGTGTCCCGGCCCGGCCGCGGGGACCCCCTCTACATCTCTGTGGGCTACGTGGACGACACGCAGTTCCTGCGGTTCAACAGCGACGCGGCGAGTCCGAAGGTGGAGCCGCGGGCGCGGTGGATGGAGCAGGAGGGGCCGGAGTTTTGGGAGGAGCAGACGGAGATCGCCAAGGTGCACGCCCAGACCTCCCGATCCAACCTGCAGACGGCCCTCGGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCCGGGCC--GGGTCCAGTTCACGAGTCCATGAACCCCCTTGCACAGCCTGGGGTCTCCCCGAGTTCCCGGGTCGGAGATTGACCCCCGGGCCAGGAGACCGTCCTGGCCCCCTACGCGGGACGAGCCTGCAGGGACTTGCGGACAGTTTC a score=99417 s hg19.chr6_ssto_hap7 1240317 2818 + 4928567 CCGGGTTGGTCGGGGCCGGACGGGGCTCGGGGGACTGGGCTGACCG---TGGGGTCGGGG--------CCAGGTTCTCACACCATCCAGATGATGTATGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGTACCAGCAGGACGCCTACGACGGCAAGGATTACATCGCCTTGAACGAGGACCTGCGCTCTTGGACCGCGGCGGACATGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGTGGCGGAGCAGTTGAGAGCCTACCTGGAGGGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCACGGGTACCAGGGGCCACGGGGCGCCTCCCTGATCGCCTGTAGATCTCCCG----GGCTG-GCCTCCC---------ACAAGGAGGGGAGACAATTGGGACCAACACTAGAATATC------GCCCTCCCTCT--GGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTACCAGAGAGTGACTCT----GAGGTTCCGCCCTGCTCTCTGACACAATTAAGGGATAAAATCTCTGAAGGAATGACGGGAAGACGATCCCTCGAATA-CTGATGAGTGGTTCCCTTTGACACACACCGGCAGCAGCCTTGGGCCCG------TGACTTTTCCTCTCAGGCCTTGTTCTCTGCTTCACACTCAATGTGTGTGGGGGTCTGAGTCCAGCACTTCTGAGTCCCT---CAGCCTCCACTCAGGTCAGGACCAGAAGTCGCTGTT-CCCTCTTCAGGGAC-------------------------------------TAGAATTTTCCACGGAATAGGAGATTATCCCAGGTGCCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCCCCATCCCAGGTGTCCTGTCCATTCTCAAGATAGCCACATGTGTGCTGGAGGAGTGTCCCATGACAGATGCAA----AATGCCTGAATGTTCTGACTCTTCCTGACAGACGCCCCCAAGACGCATATGACTCACCACGCTGTCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGAGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACGGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCGTCTGTGGTGGTGCCTTCTGGACAGGAGCAGAGATACACCTGCCATGTGCAGCATGAGGGTCTGCCCAAGCCCCTCACCCTGAGATGGGGTAAGGAGGGAGATGGGGGTGTCATGTCTTTTACGGAAAGCA---GGAGCCTCTCT---GACCTTTAGCAGGGTCAG-----------------GGCCCCTCACCTTCCCCTCTTTTCCCAGAGCCGTCTTCCCAGCCCACCATCCCCATCGTGGGCATCATTGCTGGCCTAGTTCTCTTTGGAGCTATGTTCGCTGGAGCTGTGGTCGCTGCTGTGAGGTGGAGGAGGAAGAGCTCAGGTGGGGTGAAGGGATGAAGGGTGGGTCTGAGATTTCTTGTCTCACTGAGGGTTCCAAGACCCAGGTAGAAGTGTGCCCTGCCTCGTTACTGGGAAGCACCATCCACAATTATGGGCCTACCCAGCCTGGGCCCTGTGTGCCAGCACTTACTCTTTTGTAAAGCACCTGTTAAAATGAAGGACAGATTTATCACCTTGATTACGGCGGTGATGGGACCTGA-TCCCAGCAGTCACAAGTCACAGGGGAAGGTCCCTG-------AGGACCTTCAGGAGGGCGGTTGGTCCA--GGACCCACACCTGCTTTCTTCATGTTTCCTGATCCCGCCCTGGGTCTGCAGTCACACATTTCTGGAAACTT-CTCTGAGGTCCAAGACTTGGAGGTTCCTCTAGGACCTTAAGGCCCTGGCTCCTTTCTGGTATCTCACAGGACATTTTCTTCC--CACAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATGCCTGAGGTCCTTGGGATATTGTGTTTGGGAGCCCGTGGGGGAGCTCACCCACCCCACAATTCCTCCTCTAGCCACATCTTCTGTGGGATCTGACCAGGTTCTGTTTTTGTCCTACCCCAGGCAGTGACAGTGCCCAGGGCTCTGATATGTCTCTCACAGCTTGTAAAGGTGAGAGCCTGGAGGGCCTGATGTGTGTTGGGTGTTGGGCGGAACAGTGGACGCAGCTGTGCTATGGGGTTTCTTTGCATTGGATGTATTGAGCATGCGATGGGCTGTTTAAAGTGTGACTCCTCACTGTGACAGA--------TAC---GAATTTGTTCATGAATATTTTTTTCTATAGTGTGAGA-CAGCTGCCTTGTGTGGGACTGAGAG--GCAAGATTTGTTCCTGCCCTTCCCTTTGTGACTTGAAGAACCCTGACTTTGTTTCTGCAAA-GGCACCTGCATGTGTCTGTGTTCTTGTAGGCATAATGTGAGGAGGTGGGGAGACCACCCCACCCCCATGTCCACCATGACCCTCTTCCCACGCTGACCTGTGCTC-CCTCCCCAATCATCTTTCCTGTTCCAGAGAGGTGGGGCTGAGGTGTCTCCATCTCTGCCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTCCTTCCCTATT-AAAATTAGAACCTGAGTATAAATTTACTTTCTCAAATTCTTGCCATGAGAGGTTGATGAGTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAACACATGAGAACCTTCCAGAGTCCACGTGTTGCTTATGCTGA-TTTGTTG---------------------CAGGGGAGGAGAGTAGATGGGG-CTGTGCCCAGTTTCTGTTCCGGCCACCATGGGCTTTATGTGGTCACTGCTTGGCTGGGTCATCTTTGCTGCTCCATT s canFam2.chr12 3987497 2839 + 75515492 CCGGGCTGACGGCGG--GGACCGGGCTACCGGGGCGGGACTGACTGAGACGGGGGCGGGGGGGGTTGCCCAGGGTCTCACACCTTCCAGTGGACTTCGGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGTATGAGCAGTTCGCGTACGACGGCGCCGATTACCTGGCCCTGGACGAGGACCTGCGCTCCTGGACCGCGGCGGACGCGGCGGCGCAGATCACCCGGCGCAAGTGGGAGGCGGCGGGCGCGGCCCAGTACTACCGGGTATACCTGCAGGGGGAGTGCGTGCAGTCGCTCCTTAAGTACCTGGAGAGAGGGAAAGAGACCCTGCAGCGCACAGGTCTGTGGGGCAGCTGGGA--CTCCGGGATCTCCC------CTCCCGCTGGGGCTGTACCTCCTGCTATCCCTACAAAAAGGA-----AAATGGAATTGACACCAGAATTCCTCCCCTGCCCCACTTCTTGGATCCTGAAAGTGAAGA--CTTTCTTGGTTTTCAG-TTCTGTACTAAAGAGAGACTCGCTCAGAAAACCCATCCTTCTCTCTGG-ACATTTAAGGGATCCAGTCTTT-ATGGAGAGGGATAGAGAT-ATCTCTGAAATAATTTAATAGCAGATTTCTTTGACCC----TGGCATTCACCTTGGGCACCACTGACTGACTTCCTCCCTCAGGCCTTGCTCCCTGTCCCACACCCCACTTAATTGGAGGTCTGCCTCCAGGTTTTAAGAGGCACTGGACTTCCTCTACCTAGGTCAGGACCAGAAGTCTCTGTTGTCCCACTCAGAGACCTGGAACTTCCTACCTTAGGCTATCTTATCCTGATTCTAGATCTTCCAAAGGGATAGGAAGGTATCCCAGATCCTGGAGTTCAGGCTGGTGTCTGTATTTTGCACTCCCTCTCCC---CCATTTGTCCTCTTCATTCTCAGCATGGTCACAACAGTGCTGCTTAGGTGGCCCAC--CCGGTATAATGCAAATTTGTAAATTTTCTGACCCTTCTCCTTAGATCCTCCAAAAATCTACCTGACCCGCCACCCCATCTCTGACCATGAGGTCACCCTGAGGTGCTGGGCGCTGGGCTTCTACCCTGCGGAGATCACCCTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACAGAGGTTGTGGACACCAGGCCTGCAGGAGATGGGACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCCTCTGGACAGGAGCAGAGATACACGTGCCACGTGCAGCATGAGGGGCTGGCGGAGCCTGTCACGCGGAGATGGGGTAAGGAGGGCCTCGGGG----TAGAGCTTCTACTCAGGGCAAGTGGAGCTCTTCTGGAGAATTTCAGCAGAGTCAGGTCTCAAGTCAGAGGCTGGACCCTCATCCTCCCTCCCCTTTCCAGAGCCTTCCCCTCTGTCCACCATTGTCATCGT---CAGCATTGCTGCTCTGGTTCTCCTCG------TGGTCGCTGGG---GTGATTGGAGCTGTGATCTGGAGGAAGCAGCGCTCGGGTAGGG-AACCGACTGAA----TACTCTGTGTTTTCCTGTCCTGTTGGGGGTTT-----CCTAGGGAGCACGCTGTCCTGCCTTGTTAACGGGAGGTGCCGTCCATACACGGTTACTCTCCCACACTGGA-GCTGTGTACTCACACTCACTGTGCAGCAAA-CACTTGGGAAAATGAAGGCCAGAGTT-TCGCCTTGGTGATTCTGGTGACGGGGACTGATTCCCAGCCGTCACAGGACAGAGCGGAAGGCCCCTGCTGAGGACAGACCTCCAGCAAGTCAGGTGGTCCAGTGACCCCTCACCTCATGGCT---TGTCTCCTGACCCTGACCTGGGCGGTCAGTCAGAA--TTCTGCAGACTCACTCTGCA--CCAGGACTGGGAGCTTCCTCGAGGATCTCCTGGCCCAGCCCTGTGCCCGGCCTCTCACATGATGTTTTCTTCCCACACAGGAGGAAAAGGACCAGGCTACTCTCATGCTGCACGTGAGTATGCAGGGAG-TGATCCCTGAGA-CCCCGGGGGAGTGTAGACAGGACCCCAT-GGGGAGCTCAC---CCCCACAGCTGCTCCTTTAGTCTCACCTCCTGTGAGCTCTGACCACGTCCTG--TTTATTCTCCTCTAGGTGATGACAGTGCCCAGGGCTCTGATGTGTCTCTGACAGCTCCTAGAGGTGAGACCCCAGAGACCCTGAAGTGGG--GAGGGTTGGG---------------------GCACTGGGG---------ACCAGA-----TGAGCACGAGG-GGGCTGTTGAGAATGTCAGCACTTA-TGTGACCGACCTCACAGTACCGACAATTTGTACTTG---ATTTTTTCTCACAGTGTGAGACCAGCTGCCCTGTG-GGGACTGAGCGATGCAAGATGTGTTC--ACATCTCACGTGATGACATCAACAACCCTGGC-TTGTCTCTGCAAACAGTGTCAGGATGTGCCTGTGTCCCTAGGAGCATAATGTGAGGAGGTGGGGAGATTGGCCCACCC---TGCCCACCATGA-CCTGTCCCTAATCTGATGTGCGCTCTCTTCTCTGATGTGCTTTCCTGTCCAGGAGAGGGAGGGCTGGACCATCTCCATCCCTGTCTTTGTTTCATG-----TTGAGTACTAATGACTTACTACCCGATTGAAAATAAGAATCCCGATATGAGTTTGTGTTTCCTGAGTCTTGGGATGTGGGGCTGATGAGGTAATAAAAGG---AGATTTGTGAAG-TTGAGAGAGCAAATAAATGGAAGCCCTGAGAACCTTCCAGAACTCTCATGTTTGCTGTGTTGAGTCTGTTGAAGTTGGGGGCTGAAAGGTGTCAGGAGCCGAGGGGGGATGGGGCCTGTGCCCAGTAGGTGCTCAGTGCATCCTGGG-----TGTG----CCCCTCAGCTGGGTCATCTCT-CTGCTCCG-T a score=5089 s hg19.chr6_ssto_hap7 1243135 68 + 4928567 GTCCTTGGCCCTTCAGTAGAAACTTGTCCCACCAAGACCTGTGATCACAGGGAGTTGGATGTCACCTA s canFam2.chr12 3991272 68 + 75515492 GTCCTTGCCCCTTCTATAGAAGCTTGTCTCACCAGGACCTGTGATCACAGGGACTTGGACGTCACCTG a score=7413 s hg19.chr6_ssto_hap7 1243203 675 + 4928567 CGGTGGT--------------------------------------------------CCCTGCATACAAATCTCCTTGTGGTATCAAGAGACAAATTTTCAGACCTGTCCAGGTCTTGCCTTCCTCCCAGGGCTTTTTCCTCAATTGTATTTTTGATTTTTCTCCAGTCTTTTTAAAGGAACCAGATTGTGACATTTGCAGAGAGGAGGGGTCCCATAGTTTCTCATCATGATTAAC---------TTTCTGTTGGAACTCCTCTTCTGCCCTCCTACTCTTCTTCCTGCTCTGAGTTGTAGTAATCCTAATGCTGGCTCCAATCCAAACTCATAGATTTATAAAGCAGAGTCTAATTTAGATTCATATGTGGTTGGAAAATTGTACCCATAAGGCTAGGGT-TATTGTTCCTGAAGAGAAATATATGGTTTTGTGC-TGAAGTGTGCAGGAGGGTTGGTGTGGGAG--------GAGGGA-GGACACACAAGCAGCCCTGGTGAGAAAAGCACTGGTGGCATGGATGtcca-tgtgaacttatgttctttagctgccacaaaacagcatttgccctgtggctacattaataaaggtatgggctttagaatagggaggtGCTCTACAGTGAtcattcattc------aactgacatttgttgtctgctagggatatgactgcttttgcatttagaaagcatccttaaagtaaaaacagaaaaattt-ctgggattatggtgcatacgttctag s canFam2.chr12 3991544 655 + 75515492 CATTGGTTACAGCAGCAGGTGTCCTTTGGGCTCCCGTCTCCACAGGCCTAGGTCGTCCCCTGCACACAGGAGTCCCCGAGGTTTGGAGAGATGAACTTCCAGATCCATCCA-GTCTCCCCCTCCCTCCGCAGCTGCTTTCTGGATTATTGTT------------------------------CACATCCTGA----GGTAGAGAGGGGAGAAGTCAGAGGTTCTCCTCCTCATAAGCGTCCAGGAGTTTCTGCCTCCCCTGCTGCTCTGCCCTCC-------CTCCCCGCCCTGGGCC-CCGTGATCCCCGTG---------------------GGATTTATAAAGCAGAGTGTAACGTAGATTTCTCTGTGGCTGGAGAAGAGGACCCAGGAAGCCCAAGTGCAGGGTGCCTGAGGAGTGA------ACTCTGTGCGTGGTGTGTGCAGGAGAAACGGTGTGGGGGTGGGAGCTGAGGGAGGGAGGTGGGGGCAGCCCC-ATGAGGAGAG-AGAGGGGGCACTGATGACCAGTGGCTGGTGGGGGGCAGGAGCTGCCACAGAACAGCTGTGCCCCAGGCGCT--------------------TCTAGAAGAGGGAGACCCTCTTCC-TGCGCATTCATTCAGCTGTAACTGTCCTGTGTCACATGC--AGGACAC-ACTG--TTTGCATCTGGGCAGCTCAGTGAGACTCAGGTGAGGCAAACCTGCTGGTCTCCTGGAGAGTATGTTCTAG a score=4240 s hg19.chr6_ssto_hap7 1250381 138 + 4928567 TTaacatgcatataaattctttgatac---tcctccttgc-agaggtgcagcttcattcccttcctgtgagtgtgg-cctgaacttaatgactcgcttacaggctgatacagtaatgctgacataatagtttatgactctggg s canFam2.chr12 3982455 141 + 75515492 ttaacaggttcacaaattctttgacaacaatcctcctttccagagatggatcttaatgtcctcctcctgagcatggacttgcactgaatgattcacttctaa-ctgatagaa-aaggctgatgtgatggtgtgtgacccagga a score=25045 s hg19.chr6_ssto_hap7 1250845 769 + 4928567 cagaaaacaaaaaacaaaaaagctcactgcagcttctactt-----------------------------------tggttctggttttctctttctccgggatcatgagccctgggggaagctggctgctgtgtcataagcaggcctgtggaaagctccaagtgactaggaagtgaggcctcctggggcca---gacaataagaagatgcctcttcc-------------------aacagccacgtgggatattcttgtgacttgtgaatccc-cagccccatttgagccctcagatgataaagccctggatgacaac---------------tacactgcaattttgtgagaggccctgagccagaagaactttg--agaaacctctcctggactcctgaccactagaaactgtgggacatgataaatatttgttgacttgagttgctaagttttaagtgacttgttatgcatcagtagataactaatacaCC-TTCACAAGAGAGGATGAATCATTGAACTTT----TTCATTTGCTCTAAATTGATTATAAGATATTAAACAT-GTCATTTGCTTTTAATATTTAACAAGAATTTTCATGGTTAT----ATAAGATATATTTTATTATCATTAACAATGATCTATTTTTTTTAACTTCAATTTGTA----TGTTCTATTCAAACACAAAAGGAAGATCCAGGCtatgctagactgattctatgatgacaccccaataaccaccgttggttactcacgttaccccagttactctgttga-cactaatgtaggtgctgctgtgaagggattttgcagatgtattccaggtcccctgtcagttggctttaagatggg s canFam2.chr12 3982597 845 + 75515492 ctaggaacataaaaca--------cattgcagcttctacctggctttttctctctctttttgtctgtctgtctctctgtttctgtatctgtctctgtctctggttacttgcactgggggaaga-agctacctagttattagctacctaatggaaaagtccacacagctaggaactgaggccccttgggaccatctgggaaggaaatgaggcctcttcctcatttcctcatttccctcaacagccatgtgagggagccttatgtcctaggaatccctcagccccagtcaagccatcagatgatgcagtcctgtctgacaacccagtcctgtctgacttgactgcaacccagagagaggccctgagacagaagcactcaggtataagcctctcctggattcctgaccctgggaaactgtgggacacaatatatatttgttgttctgagctgctatgctgtggataatttgttaggcaccagtacataactattataGAgtccaaagaagagaatgaagtattgcactttaatttcgattggctctaaattaactat--gatattaaacatcatctattggttttaagatttaagaagaatatctatgtctaagggaacagaatgcatattattaccattcacaacaatctatttatttggagtttgatttctgacggtaaaccaattaaaca--aaaggaagaagcaggctGTCCtaggcagatgctaagatggcctgccataactaacctctggttattcatattcttccagttgttggatcaaacactaatccaggtgctagcgtgaaaggactttgcatatgcagtgaaggttca-gatcagctgcatttaaaacagg a score=37731 s hg19.chr6_ssto_hap7 1251614 1207 + 4928567 gattatcctgcttgg-actggcctaatcaggtaagatctaaaaaggactgggttcttcctgagaatagagactcacagtgtgagagggattcagtgtgaggggcttcctccactgtgggctttgaaaatggagggatcatggggaaaaaatactggtggccaataggaattagaagccctccccactgtctactctgatagcctga-aggaaacggggaccttagtcctacaattaccagaaaccgaattctgccaacgagctctatataagcttgggggagaatcccaatcttaagatgaggatacagctttgcgaaaccctgaacaaagaatctctca-cactaggcctggatttctgat-gaaggaaatgcagacaaataaatgagtgctcttttaagccactacgtttgtcgt-aatttgttatgtactaatagaaaattcataAACAGATTCAACAGCTAAGCATATGACATTTTCTCCACTGGAATGAATT----TATGAACTGATATGCATAGTAGTTGAATAAAACCAAATGTTTCCTCACTTGCTTTGCATTTTTCATTTTGTGATTTTTGTGTGACACAATT----TTTAACACAATCATATttcattcattca-----agaaaattaacttagtgcctaccatgtgccagatacgcttttataggctgcaggaacaactttgatcaaaacaacccaaagcccctgtgctcatgtgccttccattctagaggcttcttgagagtgagatgcagccattggagggttttaagtgaagaaatgacacaatctaactcacattagcaggatttctgaccattgtggggagaacagtcatgggcagcaggtgaggggacagACCTAGGGCCACAATTCAGTAGTGACAGAGTAGTAGAGACTAAGGGGAGAGGAAGGCCTGAGAGATGACAGGGACAGAGAGAAGGGCTGGAGAAGCAGGAGGTGAGGTAAAGGAACAGAGAGAAAGAATTCTAAAGCAATAGAATTCTCAGAC-TTAAACACAGTGTTTTTATAGATTTGTAATGCATTCATCTGCAGAGCCTGGCACAGTGTTACTTGCACCTTGGTCTTTAATACATTCTGTGGGGCTGTCTAATAACTAATTGCCTCCTTATGATAAACAGGTTAGAAAAGA------ATACCA--AGTGTCCTAATAAAATATGCACATAGCTTAGATGTGAATAATTCATAAATATAGGCAG s canFam2.chr12 3983701 1170 + 75515492 gattatcccaagtagtcctgacctaatcaggtgagcccttaatagcacagggtgcttcctgagtgaagggactggaagagtgagcaggattcattgtgagtgg-------------aggctttatgatggaaggggctcccggcaagcaatgctggtggccacaggagctaagaacagcatcccactg---------acagcgtgccaggaagtggagactgccgacctccaactacaagaactggaattctgctaac-agatctgtacaagcttgtagggggacctcaagctctagttgcaaacactg-tctgtgacatgctgaggagaagacccctcagcatcactcctggactgctgacctacagaactgtgcacatacacatgggtgtggttgtaagtcactatgtttgtggttaatttgttatgcagcaatagaaaaccaccacaTAGCCTCAAT------GCACATCACATTTTC-CCAGTGGAATGAATGAATGTATGAATCGTCGTGCACACTAGTTGCATGAAATAAAAT-----CTCATTTTTCATGTATTTTCCATTTTGTGATTTTTAAGTGATGGGATTAAAATCTAATA--GTCATATTTCattcattcattcaacaacaattaatttagtgcctactctgcaccaagaatggctttctacactaggggtacagctttcctcaaagtagcccaaagcacctgtgctt-catgctttacattctagaggCTTCCTAAAagtgagatggagcccctggagcattttcagtgatgaaatgacacattctgactcacattagcaggatcactgaccccagtggagagagtggccctgggtggcaggtgttggggtggcagcaggg------tgcaatcaggagAGCG-GGTGGAGACTAAGGGGATGAGAAGGCATGAGGGCTGAGAGAGATGGAGAGAAGGGCTGCAGATGCAGGTG--GAGGGAGAGAAGCAGTGGTAAAGAATTCTAAAGTAGTGGAATTTGAATACATTGAATACATTG-TTATATCAATTTTTTATTTAATCTCTATTAGGTCTTAGCAAGATATTGTTTGCATC-TAATATTTACTGCACTCTGTGGA-----CTGAATACCTGTGGCCTCCTTATGTTATCAGGGTTAAGAAGTAACCTAGATGCCACTAATACCCAAATAAAATCGTC------CTTAGGTGC---TCATTCATACACACAGGCAA a score=3426 s hg19.chr6_ssto_hap7 1253191 87 + 4928567 CTGGTGAAGGGCACTTTGGCTGCATTGAGCACTTGCAAATTTGAGGTGATTAAATTCTGCCCAGGCTCCTGGTTGCAATATACGGTA s canFam2.chr12 3984880 84 + 75515492 CTGATGACGGGCATTTGGACTGCCCTGAATACTTGCAACTATGAGGTGATTAATGGTTGGACA---CTCTGATTGAAATGTACtata a score=1676 s hg19.chr6_ssto_hap7 1253278 73 + 4928567 ACACAATGTGCTT---TGTATTGAG---ATGTCCTGGACTCGCGCACACAAACTCAGGGCTATAAGATAAAGATAATTT s canFam2.chr12 71489879 75 - 75515492 TCAAACCATGCTTCCATGTATTGAGGATATGAGGGGAACT----CACAGAAATTTGGGGCTATGGAATGAAGATTGTTT a score=11047 s hg19.chr6_ssto_hap7 1253635 355 + 4928567 AGGCCCAAATCCCCGGGGGT-----TGGTCGAGGCTGA-GGCGGGGCTCAGC------GGCCTGGGCTGAC-----CTCGGTCGCTGGGAAT------GGGTCTCACACCCTCCAATGGGTACACAGCTGCGACCTGGACTCGGACTGCAGCCTCCTCAGTGGGTATGAACA--TACCCTATGACGGCGCCAGTTACCTCGTCCGAAACCAGGAACTGCGCTCCTGGACTGCAGCGGACAAGGCGGCTCAGATGCCCTGGCG-----GAGGAACATGCAGAGCTGCTCGAAACC--------TACCTGCAGGGAAGGTGGGCGGAGTGGCTCAGCAAAGTCCTTAAGAATGGGAAGGAGAGGCTGCAGTGCCCAGGTACCAGTGGCCACGGGG s canFam2.chr12 3987468 393 + 75515492 AGGTCCAATGCCAGGGGAGTCTAGGTGGACCGGGCTGACGGCGGGGACCGGGCTACCGGGGCGGGACTGACTGAGACGGGGGCGGGGGGGGTTGCCCAGGGTCTCACACCTTCCAGTGGACTTCGGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGTATGAGCAGTTCGCGTACGACGGCGCCGATTACCTGGCCCTGGACGAGGACCTGCGCTCCTGGACCGCGGCGGACGCGGCGGCGCAGATCACCCGGCGCAAGTGGGAGGCGGCGGGCGCGGCCCAGTACTACCGGGTATACCTGCAGGGGGAGTGCGTGCAGTCGCTCCTTAAGTACCTGGAGAGAGGGAAAGAGACCCTGCAGCGCACAGGTCTGTGGGGCAGCTGGG a score=9900 s hg19.chr6_ssto_hap7 1254097 361 + 4928567 CCTCCCGGGTTTTCAGATCCTATACTAGAGAGTGACT------GAGGGCCTGCCCTGCACTCTGGGACAGTTAAAGGATGAAGTCTCTGAGGGAAAGGAGGGGAAGACAATCCCTGAAATA-CTGATCCGCGGTCCCCTTTGTCCCCA-CAGCAGCCTTGGGCACCA-----GGAATTTTCCTCTCAGGCCTTGTTCTCTGCCTCACACTCAATGTGTATTTGTGGGTCTGATTCCAGCTTTT---------TTGACCTCGGCCTCCGCTCAGGTCAGGACCAGAAATCTCTGTT------------------------CCGGCCTCAGACA--------------CTAAAACTTTCTAAGGAATAGAAGATTGCCCCAGGTGCCTGGGTCTAGACTGGTGTCTGAGTT----GCTCCCTTCCCC s canFam2.chr12 3987978 415 + 75515492 CTTTCTTGGTTTTCAG-TTCTGTACTAAAGAGAGACTCGCTCAGAAAACCCATCCTTCTCTCTGG-ACATTTAAGGGATCCAGTCTTTATGGAGAGGGATAGAGATA---TCTCTGAAATAATTTAATAGCAGATTTCTTTGACCCTGGCATTCACCTTGGGCACCACTGACTGACTTCCTCCCTCAGGCCTTGCTCCCTGTCCCACACCCCACTT--AATTGGAGGTCTGCCTCCAGGTTTTAAGAGGCACTGGACTTC---CTCTACCTAGGTCAGGACCAGAAGTCTCTGTTGTCCCACTCAGAGACCTGGAACTTCCTACCTTAGGCTATCTTATCCTGATTCTAGATCTTCCAAAGGGATAGGAAGGTATCCCAGATCCTGGAGTTCAGGCTGGTGTCTGTATTTTGCACTCCCTCTCCC a score=21264 s hg19.chr6_ssto_hap7 1254461 403 + 4928567 TCAGCTGTCCCGTCAATTTTCAGGATGGTCCCATGAGGTG---GAATGTCCCATGAGG--AATGCAAAGTGCCTGAATTTTCTGACTCTTCCCCT-CAGAACCCCAAAAGACTCACATGACCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCTCTGGGCTTCTACCCTGTGGAGATCACACTGACCCAGTAGTGGGATGGATAGGACCAAATGTAGGATGCAGAGGTTGTGGAGACCACACCTGCAGGGTACAGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGTCTTCTGGAGAGGAGCAGAGATACACATGCCATGTGCAGCACGATGGGCTGCCAGAGCTCCTCACCCTGAGATGGGTAAGGAAGGAGATGAGGGGTCATGT---CTCTTCTCA s canFam2.chr18 44178237 406 + 58872314 CCAATTGTCCTCTCCATCCTCAGCATGGTCACAAGTGCTGCTTTAATGACCCATGAAGGTAACCCAGAGTG--TGGATTTTCTGATTCTTCTTCTTCAGACCCCCCCAAAACATCTGTGACCCGCCGTCCCATCTCTGAGCATGAGGTCACCCTGAAGTGCTGGGCTCTGGGCTTCTACCCTGCGGAGATCACCTTGACCTGGCAGCGTGATGGGGAGGACCAGACCCAGGACACAGAGCTTGTGGAGACCAGGCCTGGAGGAGATGGGACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACATGCCATATTCTGCACAAGAGCCTGCCCAAGCCCATCACCTTGAGATGGGGTAAGGAGGGGTTTGG----CATAGACACTCTTCTCA a score=636 s hg19.chr6_ssto_hap7 1254864 208 + 4928567 CGGGAACTAGG------AGCCCTTCAGCAAGGTCAGGGTT-----TGAGGCCTG----ATGGTGAGGGCCCCTCACGTTCCCCTCCTTTCTTACAGCTGTCTTCCCAGCCCACCATCCCCATCATGGGCATCGTTACTGTCCTGGTTGTTC---TTGGTGCTGTTTTCACCAGAGCTGTGGTCACTGCTGTGATGTGGAAGAGTAAGAGCCCAGGTAGGAAAGGGG s canFam2.chr35 27051827 216 + 29542582 GTGGAACCAGAGGGGTTAGCGTGGCAGTGAGG---GGGTTCTGCATGAGGCTGGGGCCATGGTTACAG---CTTGAACTAGCTTTTGCTCTTTCAGA-GGCCCCGATGTCCGGCACCCTGGTCGTTGGCATCATCAGTGGGATTGCTGTTTGCATCATCGTCCTTTTTACTGGAATTCTGTTCAGAATCTTAA---GAAAGAGGCAGGCTTCAAGTGAGTAGGGAG a score=4197 s hg19.chr6_ssto_hap7 1255160 108 + 4928567 CTGTCTATCAACACTTACTCTTTTGTAAAGAACTTGTGAAAATGAAGGACAAATTTATCACCTT--CATTGGAGTCATGAGAACCTGACTCCCAGCAGTCACAGGTCAGG s canFam2.chr18 44179147 108 + 58872314 CCAGCTGCTAACATTCACTCCTTAGTAAAG-ACTTGTGCAAATGAAGGACAGATTTTTCACCTTTCTATTCTGGCATTGGGGACCTGAGCCCTAGCAGCTGAAGGT-AGG a score=7568 s hg19.chr6_ssto_hap7 1255268 224 + 4928567 GGAAGGTACCCGCAGAGGACAGACCT-CACTAGGACAATTAGTCCAGTTTCAACACATCCTCTTACCTAGGGTTTCCTGATTCTGACCTGGGTCTGCAGTCACAGTTCTGGACAC-------------------------TCCTCTGGGATCTCATGACCCTGCTTCCTTCCTGGCCTTTCACAGTTTATTTTCTTTCCACAGATGGAAAAGGAGTCAGCTATGCTCAGGCTTCATGCAAGTGTGGTAGG s canFam2.chr12 3938867 246 + 75515492 GGAAGGCCCCTGCTGAGGACAGACCTCCAGCAAGTCAGGTGGTCCAGTGACCCCTCACCTCATGGCTT---GTCTCCTGACCCTGACCTGGGCGGTCAGTCAGAATTCTGCAGACTCACTCTGCACCAGGACTGGGAGCTTCCTCGAGGATCTCCTGGCCCAGCCCTGTGCCCGGCCTCTCACATGATGTTTTCTTCCCACAGGAGGAAAAGGACCAGGCTACTCTCATGCTGCACGTGAGTAT-GTAGG a score=20610 s hg19.chr6_ssto_hap7 1255500 504 + 4928567 GAGTGATCCCTGAGATCCTTGGGATAGTGTAGACAGGAGCCCATGGGGGAGCTCA-CCACCC--CACAATTCCTCCTTTAGTCACATCATCTGTGGGCTCTGACCAGATTTTGTTTTTGTTCCACCCCAAACAGGGACAGTACCCAGGGCTCTGATGTGTCTCTCAAGGCTTGTAA-AATGACAACTTAGGGGGCCTGAAGGGAA--GGAGGGGCTGGGGCATAGGGGACACAACTAGGCTCTGGAGATTCTTTGATTTGGAATTTTTCAGGGTGTGGTGGGCTGTTCAGTGTCACCACTTACTATGACTGTTCTGAATTTGCTCATGACTATTTTTTTTCTAAGA---------CTGCCTTGTGAGGGACTGA--GATGCAAGATTTGTTCATGCCTCC-CCTTTGTGACTTCAAGGGCCTCTGTCTTCTCTTTCTGCCAA-GGCGTCTGAATGTGTCTACATCCC---TGGTATCATGTGAG-AAGTGGGGAGACCAGCCCACCTTCATGTCCACCATGACCCCt s canFam2.chr18 44179500 506 + 58872314 GAGTGATCCTTGAGA-CCCTGGGATAGTATAGATAGGACCCCATGGGGGAACTCAGCCACCCTATATAGCTCCTCCTTTAGTCTCATCTCTTGTGGGTTTTGACCACATCCTG---TTGTTCTACCGTA------GGCAGTGCTCAGGACTCTCAGATGTCTGTCATGGCTCCTAATGGTGAGACCCTGGAGGGCCTGAAGCCAAGGGGAGTGGTTGGGGCAGAGGGGACATGACTGGGTTATGAGGATTCTTTGAGTGGAACATTATAAGCATGTGGAG---------ATGTCAGCACTTAACATGATTGACCTGAATTTGTTCATGACTATTTTCTTTCACAGAGCAAGCCAGCTGCCTTGTGGGACTCTGAGTGATGCAAGATTTGTTCACACTCCCACTTTTTTGACTTCAAGAGCCCCGGATATCTCCATCTGCTAATGGTGTCTGAAAGTGACTCTGTTCCTATTAGCATAATGTGAGCAGGTGGGGAAATTGGCCCACCTC--TACTCATCATGTCCCTT a score=4913 s hg19.chr6_ssto_hap7 1258006 127 + 4928567 aaccagggacaaagactaaatgt-ttttgttttaCCTCAGATTACCCGCTTTTCTTTGACCACATATCTTTTATAGGAAAAGGATTATAAAAGTAAAGAGGTATTGGCGTATTATCAG--------AGTCtcattc s canFam2.chr27 20279756 136 + 48908698 aACTATGAACAAACACCAAATATGTTTTATAATACCACAGGCTACCCGCTGGTATTTGACCATGGATCCCATATAGCAAAAGAATCCTGATAGTTAAAAGATGCTGGCAGATTACTAGTTCTTACTAGTCCCATTc a score=32164 s hg19.chr6_ssto_hap7 1262373 1123 + 4928567 GAGAATGCTGAGAGGTTGGCAGGGCTGGGGGAAGTTTCTGGGGACTTAAGCAACAAGGAGGTGCAGGGGAAGGGTGCATGCAGTGCGTGGCCACTGAGGAACGTAAAACCCGGGAACTGGGGGATGGATGCAAGTGAGAAAGGGATGTGGAGGAGAGTTTAGGATCAGGCTGCTTGAGGTGTAACGGGTTGCCTAC---------------AGCAAAAACTAGATGGCTGTTTATCAGGAGGTGGTCAAAAGGATTCAAGTTATGGAAGAGTAAATGAATAAGATAAC-ATTAAGGTTTTGTTGTTGTTTTAGTGAGAGGCTGGAAGGCCACCAGGGGCAGTTAGCTGTCAGTAAGGCAGCAGAAGGGCTGGGGTCGCTACATAAGGAAA-ATCAGTACTAgggttgt------aaactcaaatgactacagggccag-caaataataaaaaggagggctgcag----ggctgggtggg-aact-----gtggcggctgctcagctcttcttacagtgctggcactgtgttgccagattgtctgctt---tgtcagaggacaaaattctgactttttatgtaaaata---taattttaaaatgctgatattctgttcaaataacttaaaaacccaaaacaggcaaaagaggatgccagtttgcaatccctgAAGTAGAGAGAGCTCGTGCTGGGGAAAAGTCTGCCAAAATGCTTTAAGGTGGAATGTGTAAAAGTTC-----TGTTTCCCAGAGTCGGGCTGGGCCAGGGGAGGATCCTTGCAGCCCAGGAGG----AGGAAAAGCCACTAA---------GTCCCCTCCCAGGGCTGGACAAACTGGAGACCCTTTACAGTTGCTGGGTCACCAGTGGGGGTTGCTTGAAACACAAACAGTGCACCTCTAGGCCTGCCACGGAGAGGAACGGTGCCTTTGAAGCACAAAAAAAAAAAAAACAGGAAGGGAGGGCGGAGCCAGA---AATGCCTTTTCTAATGAGAGTACCCATCAGGGAAGGCTCCATAGGCTGGCAGATCTTCAAACCAGCAGCTCTTGGCCCAAAGCCAAACCCAGCAGGGCCCGGCCAAGGGCACTCTGGGATGCCAGCTGATCAGTCCCTTGCCTCCCCAAGTTCCTCCTGGGGTCAATGGGCCCTCGGGAGGTGACTAAACTAACAc s canFam2.chr8 52686536 1069 + 77315194 GAAAGTGGAAAGACGTTGGCAGGGTTGGGGGAAGGTCCTAGAGACTAAAGCAATGGCAAGTGATAGGGCGAGGGCGCA----GCTGGCCACCACGAAGGAGC--AGAGCCTGGGAACTGGGGAGCG----TAAGTGAGAAAAGGATGCAGGGGAGAGGTTAgaaacaggctgcttgggaaatagtgagttccctgttgctggaagtatccaagcaaagcctggatggcaacttgtcgggaagctgtcgagaggattcaggttatggaaggggagccggataaggtgaccggcaaggtttcttt------tcactgagaggctgtgcttcAGCCAGGGGCC--------------AGGCCCCGGA------------------TAAGGAAGGATCAGAACCAGGGTTGGTTCTGAGGGTTCACACGCCCAGAGGGCCAGGCAGGGGATTAACAGGAGGGCTGCAGTGAGGGCCGGGTGGCCAGCTAACGGGCTGCTCCTGCCCAGGTATTCTCAgagtgggggccatgcattgccagattgtatgattgtttctcagaagccagagctctggatttttgtgtgaaatgacctgatttttaaatgttggcaatcagttcggacaatgtaaaaacCCAACATG----AAAGAGAATGCCAATTTGTAATCTCTGAGGTAGAGAGAGCTTGTGCTGGGGAGAAGTCCACTGAGAGGTTTTGAGGTGGAGATCAAGAAAGTTCATCTAGGCTTCCCGGGA--GGGCTGGGCCAGGGCAGGGTCCTCTCTGCTGAAGCTGCCCCAGACAAGGCAGCTGGCCCGTGTTTGTCCTCCTCCCCGTCCTTGCAGACCGGAGGCC---TACCG-----GAGTCACCAGCAGGGGTGGAGTGGAGATTGCCCAGCGCCC-----AGCCTGCCTGGGAGATGGATG-TGCGTGGGAAGCA----------------GGGAGGGGTGGAGGGAGGGAGACACGATGCTTCTGCTGATGCAGGTGCCCATCAGGGAAG-CACCAGGGGCTGGCAGCTCTTCACACCAGCAGCTTCTGGCCCAGAGCCAGGCCCGGCA---------------------GGAGAGTCAGCTGGGCAGTCCCTTG--------AGTTCCTCA-GGGGCCGCCAGGCCCTGGGGAGGACACCTAACTAACCT a score=67334 s hg19.chr6_ssto_hap7 1267460 2590 + 4928567 GGATGTAGATGGCAACGTGGCTCTCATTCCCCTCCCAAATACCCCAACTTTCATCGCCTGTTCCAGAAGCCTT--GTCACCTACAAGCCTATCTGCACAGAAGG---TATGAGGGGACCCTACAGCCCAGACAGGGACCCTCCCATCTCTAGCAACTGTCCCCTTTTCTCACCTGGAC--CCTCTGCACCTGATGTTGTCTTCTTCTTGCATCAAAGGACACAGAGAATAATAATACTACTAATAATACTAATGATGATGAAAGCAGCAACAGCAGCAACATATGGAATGGCTGGTCATCAACTCTGAAGCACCAGGGCCATCCCTGAAAAAAAGGGCCTATTACACACTGGGCACC-CACAGCCACAGCCGTTC-CTGCTGCCCCCACCCTGG--CCTGATCCTCCTTATGTTGGAACCCTC---AAGGGTGGTCCCAGGTTCACTAGAGGACACAGGGTGAGTGCTGTGATTCCTGCTGTATCCCATGGAGCAGATGACCCTCTGCTCCTCTCCTTGGGGAATCCTGCAGGCCACCTCTGTGTGGTAGGTCCCATCCCATTGGACAGAACACCCCAAGACTGCTGGGCATCCTGGCTCAAAGACGCCCCATCCTGTCACCAGGTCAGAGAGATATTCTGGAGATTCAAGCC-AGAGCCCAGCATATCAGGGTGATGTTGCCCTCCAGGGCCTCACTGCAGGCCACACTCATGGTGGAGGAGTGGGGGACTGGAGAAGAAAGGGCAGAGACAATGAGGCACATGGCCAAACCCTGCTCCCCTCTAATGGAGATGCAGGGAATAGGGCTGGTCCGCTCCACTGCTCCGACTCTGGCAGAAGTCCTCACGGACCCCAGACCTTCTGCAAGTCTGTCCT-CACCCTGGGGACCAATTCCTCAAGGCTGGCAGAAGGATGGGCCTCGAGACTGTGTCTTTATGCTCTGGGATCCCTGCATTGATGCTGAGGAGGGGAATGTCAGGGGTGGGCTCCTGGTACATGGGG---CCAGAGGGAACTCTTAGGGATGGGCAGGCTGGGAAGCAGATGGGGCAGCCTTGGCCCTGGGGCCTTCCTCTCCTGCCTGACACCCACC----CAGGTTCAGGCTTCTGTCAAAGGGCCCACTGCTTCCCCAGATTGTGACACTGGA------CCCTTCAATCCCTGACCCACTGTCTTTTTCCAGTGGCTCTAACAGGAGAGAAAAATCAGGATATAACACACCAACAGAAAACACATGCATCC-ATAGCACAAGGAGGGTTTCCCTGGACAGAGTTGGGGGTCGGGGTGACTCTAGTGGAATAGGGGAGAGGAAAGCCCCTACCCAGGCCCAGTACCTGCTCTCCTGACACCCACACAGGATTCCAGATACTGCTGTAGTTTCTGCCTG--CAGTCTA-----CCCATATAGGGTGAGAGTGTGTCTCGGCCGGCATAGCATCTTCCTTCTAGAAATTTGTGATGTTCATAGCAAAGGTCTGAGTTCTGGAGGACTGGGATACTGTCCATTCCTGAGTCTCCAGGTTG-AGAGAGAGGAAGAGCTACCCATAAGAGTAGGAATGCCTAGAGCCCCTGGTGCTGCTGGCTTCCT-GATCTCACAACCCCTAATCTCCTGGAGGGAATGCAAGGCTACCCCCACCCAGCAGT-----------------------------------TCCAAGTGAGGAACTCAGACCAGAGGAGACCCCTCCCTGGCCCTCCTCCATGCCTT-TCTGTGTGGGCTGAGTGCCAGGTTACCTCCCCA--CCGAGCTCTGCTGACCCCTATTCCTCACCCCTGCCCCCAGCCAGATCCAGTGGGGACAGACAGGTCCCTGCTCTCTGCCCCCAGCTCTCCTGGAAAAGGTCTCCCATCACTCTTGC-CTGCTGCCACCTCTCACCTCCCTTCTGTC-------CCTTGATATATGCCAGGGCCCTTCTGAGGTCCTGCCCATTCTCTGTCAAGTCCTCAGTCTCTGTGTCCCAGGTCTCAGCTCCCAGAACTGCTTCTGCCCACTGTCCCCAGGACCCAGCCCTGCCTTTCTGCCTGTTGAAGAGCAGGAAGGGCTGACCATCCAGATGTCCCTCAGCAAGAAACCCTGACTGCACAGATCCATCCCGGGACAGCACCGTGAGGTTGTAATGAAGACTGTGGGGCCCTGGGGAACAAG-AAACCACGGATGAAACTTCTTCCTGGAAGTAACTTCAC-ATTGATGTTTAAC-ACACAGGTCTGCTGTCTCAACCTTTC--------TGAGGAGGCAGGAAATGTACATATGCAAAGGGACAAGAATGAGGATTTCAGATACAAGGAAAACTGGGAGGGCAGGAGGATGGAGGAGCAGACTGAGGAACAGAAGAAGGGGGAATGGAGATGG-CAAACATGTAGGCCAGCTGCCAAGGCAGGGTGGCTACAGGCCACCTAAG-GGTATAGGGAGGAGGCCAAGGAGAGAGGCTGCCCTGC-AGTGGTGAGGGAGGAGCACGAAGGCAGTGGTGGAAGGAAGGTCTTGCCAGAGGGGAGGGTGGAAATGGGAAGGGACCCAGGCTCAGAGGGACCCATGACCAGCATGGCTGTGCTACACAGG--TGAGGGTGAGATG--GAGTCGCGGGCCGCTGCCTTTGAGGAAGGCTCATCATGTACAAGATGGGAGTAAGGGAGGA s canFam2.chr12 71546920 2452 - 75515492 GGATGTAGATGCAGATGTGGCTCCCAG-CCCCTCTCAGCT-CTCTGACTTCCAGCTCCTGTTACAGAAGCTTTTCATCCCCT-----CTGATCTGTGCAGAGGGAGACATAAAGTG-CCCCACGTCCTAGG--AGAGCCCCTCCAACCCTACCCACTGCCCAGAATTCTTATCTGGGCTTCCACAGCTGCTGGTGGTATCTTGTTCTTGGAGAAAAAAACACGTGCAATGATGACAGTA------------------AGAAAATCAGCAGGAGCAGCAGCAGGCAGG-TAGCTGTCCATCCACTCCGGGGCACTGGGGCCTTTCCTGGAAAAG-GGCCTTATAGTGACCTGGGCTCCTCAAGGATACAGGCCTGCTCTCCTCTCCCGACCCTGGTTCCTAACTCAACCAGGGTCAGAACCCCCTCCACGGATCACCCCAGGCTCACTTGAGGGCACACAGTGTACAGTGTGGTTCCTTGTGTCTTCCATCTGGCAGGTGAACCTTTGCTCCTCTCCTTGAGA---CTTTATGGCCCCTCCTGTCCAGTAGGTCC-GTCCCATT-----------CCCGACACTACTGGTAATCTTTGCTCAGGGGT-TCCCATCCTGAAGCCAGGTCAGGGAGGTATTCCTGGGAGAGAAACTGAAAGCCCAGCATGTCAGAGGGATCATGCCTTCCAAGGCCTGGCTGCAGAGCATGTTCACTGTTG------GGGGCACTGAGGAAGAAGGCACAGAGCTGGTGAGGTCCATGGCTGAGCCCTGCTCACCTCCACAAAAGA--CAGAGAGAAAGGCTGCTTCTC-CCACT-TTCCACCTCTGGCTGAAGCCCTCACTGACCCCAGACCTGCTCCAAGTCTGTTCTGCACCCTGGGACCCAGGTCCTTAGCCCGGGCAGGAGGATGGGCC--AGGAATGGGAT------CTCTTGGATGCATGTGTTACTGCTGACGAGGGGG-CATGGAGGGTGGGCTCTTCGGCTGAGGGGACTCTAAAGGAAACTCTTTGTGACAGGGAGACTGAA------------------------------CTTCCTCTCTTGC-TGACACCTGCCTTCTCTGGTTGAGTTCTACGTAGGAAAGCCCACTGCTCCCTGGACTATTAACACTGGAAGATTTCATTTCCATCCC-AACCTGCTCGGTGTCTCTAGAGACTGTAACAGGACAGGCGGATCTCAATACAATGTGCCAACAGAACATGTGCGCATCCCATAGGACA--------------GGACTGCTGGGGGAGGCTCAGTGAGTCTGG--------GGAAGAAGAAGGCTCCTTCCCCGG-------------------------------------------------GGGTCATGCCTGACCTGTCCAAGAAGCCCATTCAGGTTG-----------------------------CATCCCAGGACTTCTTGATTTCCATGATCGCGGTCCAGCT----GAGGATGGGGGAACAGTCCATCCACGGGTCTTCAGGTCATAAAGAGAGGAAGAGCTCCCCATCATGGCAGAAATGCCCAAAGCTCCTGGTGCTGTCGTCTTCTGAGATCTTG-AGCCCCATATCTCCTGCAGGGAATGCAAGCCTGCCTCCAGCCAGCAGTGACTTCTCCCACCCTGTGTCCCTCTGACTTCCCTGCCCCAGTGACAAACTCCAGCCAGAGAGCCCCCCTTCCT----CTCCTCTATGTCTTCTCTGTGCTGGCTCAGTAATGG----CCCCCTTAGGCTGAAGTCCACAGACCTTTAGCCCTCACCCCCACCCCCAGCCAAATCCA--GGAAAGAGACAGGGCTCTGCTCTCTACCCTGAACTTCCCTGGGAAAGTCCTACCATCACTCTTGCTCTGACCCCA-CTCTCACCTTGCCTGTGCCTACAGGGCCAGGACACCTGTCAGACTCATTCTGAGGCTGTTTCCAGTCTCTCTCAAGTCCTTGGCCTCTGTGTTCTGCGTCTCAGA-CCCGGGACTGCTTCTGCCCACAGTCCCTGTGGCTCTACCATGTC------------AAGGTGGAGGAAGGCTTGATCATCCAAGTGTCCCTCAGTGAAAAATCTC--CGATACACATCCATCTT-GGACTCCACTGTGAGGTTATAAGAAAGACTGCGGGAATCTGGGGAGGGAGTAGATCACAGATGAAG---TAACCTGGAAGGAACAACATAACAGATCCTTCTCTGAAAAGCTCTGCTGTCCTGAACTGCCTGAAATATTGAGCATGCAGAAAATGCACCTGTACAAA-GGACAAGAAGGAGGCTTTCC-ATACAA-GAAGAGAGGAAAGGGGGCAGGAAGGAGAGG--GAAGAAGGAATGGC--AAAGAGAAGTGGAGATGGACAGACATGCAGCATGGGAGCCAGGAGAGGAAGGCATGGGGTCCTGTGGGTGGTGTAGGTAAGAGGTCAAGGGGAGATACTGGCCTGCAAGAAGCAGGGGGAGGGCAAGAAGGCCATGGGGAAGGAGAGGCCTTGTGAGCAGGGAGGCAGGGGCAGTGGGGAGCCCAAGGTT--GAGTGATCCATGGCCAGAGATGCCACGGTGCTCGGGGATTATGGTGGAGTGGAGAGTCAGGGGCTGCTGCCTGTGGTGAAAGTTCATCAGGGAAGAGATGGGGTCAAGGGTAGA a score=11538 s hg19.chr6_ssto_hap7 1271149 663 + 4928567 ATTAGAAAGAGGCTGGGGTCCTGGTCAGAGAGAAAAAAAACAAGGC---------------CTGAGGAAGGGCCTTCAGAGAGGAGTGGTGCTGAAGGCGGAGCA----GTCACACTCCAAAAGAGGGTTCAGGTTAGAAAACCCTCACAGGAGGAAGGTGGTGCTGGGAGAAGGCCCAGAGGAGGGGATGACCACAGCCCACTATGTGGTAAGTGAAGATTTTGGATATGAAGTCTAGGAACTGACAGCCCACCGGGGTCAAGGAACCGAAAGAGG-ATGAGGGTCAAGGA---------GCCGTTGGAC-TAGAGCCTGTGTTGGGTCTGGGTGGGGGTGAGGAGATGGGCAGGGCAAGGACTAAAGGGTGGCA----TGAGA----AGGAAGGGGGG-----GTGACCCTGGGAGAACTT--------------------------GGGGTAAAGTGAGAACAGGAAGGGAGGG--GTTGTCTGGGGGAG-------GGTGGGGTTTGGGGAAGGTGAGAACTTGCTGAGGGCCCAAGGCAGCTGGTCAAGAGGTGGGAACAGCA--CAAGGTCCCAAGGCAGAGAGGGGCAGAGGGACCAGGGAGGGATGG--TCCAGCACCTGAGGGTTTCAGGGTGGGGTCCTCAAGAGGGTGAGGCTGAGGATGAAGGAGTGGGGAACGGGTCAC------------------CTGAGGCAGGGCCCAGAGCAGGCATCTGCACTGGAGGGGAGGGAGCATCTGCG s canFam2.chr12 71549582 707 - 75515492 ATTAGAAAGGAGGGGGAGT----GGAAGAGAAAATAGAACCAAGACACCACGATGAACTCCTTGTGGAAGGACTTGCATGTGGGGGTGGTTCTG--GGAGGAACGATAGGCCAGACACCCAAGGAGGGTTAGGGGAAGACATCCAGCACAGA--GCAGGCAG-GCTGGGAGGAGGCTGGCTATAAGGAAAGGCTGGCGCTGACCACATGGCAAG-----------AACAACCAGTTCGAAGACTG------------GGTCAAGAAACCAAAGGGGGGATGAGGGCCGAGGATTAATCTGGGAGGTTGGACCTGGAGTAGCTTTCTGGTCCA--CAGGGGAGAGGGAATGGCAAG----AGGATCAGGGGACACTAGTGCTGAGGCTCTGGGAATGGGGGACTGGGTGACCCTGAAAGAACTTAATTACAGGCTGACAAGAGAGGAGCAGGCATGGGCTGAGAGCAGGGAGGAGGCACTGCTGACTGCAAGGGCCCCATCGGAGGAGCTCCTGAGAGAGGAGAGCTTGGTGAGGGCC--AGGCAG----------GGGGGCGCCAGCAGGCAAGGGGCCCTGGGGGAAGGGTACAGAGGGATCAGGGAGGTCTGGAGTCCAGCCCACAGGG-----ACAGTGGAGGCCACAAGAGGGTGAGGGT-AGGATGAAGGAGTGGGGACAGAGTGGTGCTAGGTGCTGGCCCAGGATGAAGGAGGGCCAAGGGCAGGTGCCTGCACTGGAAGGGAGGGAGGAGGAGGG a score=4109 s hg19.chr6_ssto_hap7 1271853 315 + 4928567 AGGGCTCCCCTTAAGTGGCCTGGAGG--GGAGTGGGATGGAGGGAAGACTCCCCCGACAAAAGGCAGCACCAGAAAGTTAGGGTCAGGGACAGCTGGGAATGGAGAGGCATAGGGGCAGCACTGGGTGAAGGCTGCTTGTAGGAAAGGCCCATAA---GGGAGGCAGGAGGGACCTGCGGTGGTGGGAGCAGGGGATGAGGGCAGAGGACACCCTACAAATGGATCAGAGAACTGCAGATAGAAAGGGGTAGCA-GGGAGC-----AGGGAGGGCAACAGGACCCAGGGGGCCATGAGAAAGGAAGCTGAG--GAAGTAGGAGGGAAC s canFam2.chr12 71550340 272 - 75515492 AGGGCTCCCCTTG------CTGATGGCAGGAGAGCAGTGGAAGGGAGACT-TCTAGACAAAAGGTCATCTCAGGAAGATAGAGTT-GGAAAAGTTGGGGGGAGGGAGATCTA-GGCCA---------GAAGCCTCTTTGTGGGCAGTGGCCATGAGATGGAAAGTGGTGAGGACCC-----------AGAAAGGGATCAGAGAAAGGAA-----------------AGAGAATGGCAGACAGAGGGTGGGGGCATGGGAGACTCTGAGGGGAGGCGAAGAGATT----------GGAGAAGGGGGCTTGAGCTGCAGTGGCAGGCAAC a score=13487 s hg19.chr6_ssto_hap7 1283409 353 + 4928567 aaattcttacacaaatggttggcagaatatgca-acttgctttgcggatgcacatgtagaccatctgctctgaccaaggagtcacagaagcttcataa----gacacaacatttgagctgcgttttgaggtataaataggagtctgacaggcATCCAGGACAGGAGAGCATTGCTCAGAACCCAGGACATGAATTTTTCTCTCCTAGGCCAGGCCAGGACTCAGACTAAGCTGACTGAGGAGCCAGGTGCTTCCTGGCAAGGAAGTGTGTCCCATATATGACTATCCAGAAGTCACAGCTGCTCAATATTGAGTCTTGAGACAGAGAGAGAGAGGCCTGATTTGAAATGCAGAATTCT s canFam2.chr12 71625351 331 - 75515492 aAACATTAACAGGAATGATAAGTGCAAGCTGCACATGGGCTTTTTGGATATATATGTAGCCCATCAGCTCTGACTAAGGAGTCCCAAAA-CCTCATAAAAGAGACA-AACATGTTAACTGCATTT-GAGGTATGAGTAGAAACCCAGTGGACACCCAGGACAAGTGAACATGGCTCAGAATCCAGGACATGAGTGTCTTT-GCCCAGGCCAGGCCTAAATTCAG---------------GTGCCAGGTGCTTCCTGGTAAGAAAGTGT-CCTGACCTCTGACTATCCGGA-GTCACAGCTACTGCATATTGAAACTTGAGA------GAGGAAAGCCTGATTTGAAAAGCAAAATCCT a score=9303 s hg19.chr6_ssto_hap7 1283781 156 + 4928567 gcagtttctgattcagtaggtctgaggcagggcctgaaaattgcatttctaacaagtcctcaggtgatgccaatgctacttgtcccaggaacacactttgagaatcacCACCCTAAGGCAATCCATATTGATTTCTAATATCAGAAGAGGGCTGAC s canFam2.chr12 71626164 156 - 75515492 ggaatttctcattcagtaggttctgggtagagcctgagatttgcatttctaacaagttcccaggtgttgccaatgcagcttgtctcaggtccacactttgagaaccaTAGCCCCAAGTCAGTCTGGTTTGGTTTCTAATATCAGAAGAGGCCTGGA a score=13415 s hg19.chr6_ssto_hap7 1283937 648 + 4928567 AGGCAAAGG----------------------------------TATAGGATAAACTAGACCATGCATGGGCCATCTTGGAGAGC-------ACCCCA-----CCCAAGTCTGCAGCATTTGATTTCCTTGGGATCCCGGGAATGGCAGACACCCAGGAAGGAATCAAATGTGGGGTT---ACAGGGCAATCCAGAGGCTGAGCTT--CACACAGCATCTGGGGTTCCCACTACTTCACA-AGTGGCCCCCACACCCCCAATCCTTCCCACCCCTTATGAA-----ACTG----------------------------------------------ACCTACGAGTC---------------------TTGCTCTGCTGTCC-----TGGGCTGTTTGGGCCTGGGATGT--------GAGCTCTGACTATACCTTCTGATCCAAATACAGGGTGACCTCATATGACA--------CATACT----------TAGAATGGGCTCATAATGAGAACCTTCCAAATTCAGCAAATGGATTCAATCGTGTGTTTTCCAGGAGAATTACCAAGTGTTCTCTTTTCTAAATATCACATACTTGAGCTCACATGGACAGTAGAGGAAGTTCTGAGCCTGCTGAAGCCACAATTGGTACATTGGACC--------CCGTAGAATTCCTTGTAGATTGGGCTTCACCATTTACATCAGGATTTGGTCAAAATTTCCTTCACCAAACCGGTTGCATTTGTTAAGTAACCATGCTCTCATTTTGACTTTTAATGAATGAAAGACAGACACA---------------CACATAAAGAA s canFam2.chr12 71626506 814 - 75515492 aGGATAAGGCGAAGTGGCTTGGAAAAGGACTATAAGGCGGCAGTATAGGACAAACTGAACCACACCTGGCTTATCCTGGAACCCTGCTCCAACCCCAGTGATCCCGTGTTTG-----TCTGATTGCCTTGAGTTCCAGCAATGGGCAGACATCCAGGCAGGCACCAGACATGGAGGTCTGAGAGGGTGATCCAGAAGCAGCACTTTACACACAGCACCTGGGGCAACTGTGCCTCCAAAGATTCGTTCCTGTCCCCTCAGGCCCTTCCACCCCTCACAAATGTTAACTGCATTTGAGGTATGAGTAGAAACCCAATGGACACCCAGGACAAGTGAACTTATAAGTTGACTTAAGTCAACTCACAGCATTGACCTCCAGGCCCTTGCTCAGCCATTGGGACCTATGATGCCACCTGAGGAACTCTGAGCACACTTTCTAATCCAAAGATAGGGTAGCATAGCCTGACAATGACAAGCCAACTAACAGGATAACACAATGGGCGAATAATGATGGTTCTGCTATTTTGGCAAATGGCTACAATAAGATGTCCTAGACTAGAAGCACCA-GTGATTTATTTTTGAATCATTGGAC-TTTGAATCCATATGGACACTAGAGGGCGTCCTGAGACTTCTAAAGCTACAAAGATTGTGTCTAACCATCAACAACCAAAAAGT--CTTGTAGATGGGGCTTTCCTGCTGAAA-CAAGACTTGGTCGA--TGTCCTTGACCAAACGAATTGCATTTGTTGAATAATCGTGCCCTTATTCTACCTCTTAATGAATGAAAAACAAATATATCAAGAAAGATACGGCATTTAAAAAA a score=2070 s hg19.chr6_ssto_hap7 1284585 39 + 4928567 AGATAGTGCAATGAAAAAGAAAACAACATACTGAATTAA s canFam2.chr12 71627483 39 - 75515492 AGATACGGCATTTAAAAAGAAAATAACCTGCTAAGTTAA a score=2036 s hg19.chr6_ssto_hap7 1284625 44 + 4928567 GTGACAGGAAACATCCTTGTTTGAGAAGTGATATAATTTTTAGA s canFam2.chr12 71627717 43 - 75515492 aTGGTAGTAAACATCCTTGTTCAAGAACCAATAC-ATTTTCAGA a score=13323 s hg19.chr6_ssto_hap7 1284669 409 + 4928567 CAGTTTTTTTTTTTAATTAAGGAAG-----------------GTAAGAGAATTAATTCTGTTAGGCTCTTTTTTTAAGTTTTTTATTTTGAAGGATTTGATTTTGTTTGTTTTGTCTGCCTTGGAATTAT-CTTTTATTTTATGTTTTG-------ACTTGGCTCAAAA--CTCAAAAAG-TTAAAAGTCTCTCTCTTA-TGCTACCCCAT-CTTGACaggcagctatttatatcagtttcttgcttattctttcaaaggcattttatgcatatgcaagtcaatctaaatgtatatgtatataatctttctcccatttcacacaaattttagcaaactacatatgctttcctgcaccttgcctttt--cccttcacattgtatcacaaagaccatcacatgaagaaataccaagagcttagctacatctttgtttgaaatt s canFam2.chr12 71627946 425 - 75515492 CAATTTTTTATCTTAATAAGAGTAGAGAAAAAAAAAAAAAGAGTAGAGGAATTATTCCTGTCA---Ctttcttttcatttatttactttgagtttttcaattttat---ttttgtctcctttgaaattatgtttttgttttgttttttgttttatatcttaattCAAAAGCTTCAAAAAGATAAAAAGTCtctttctcacccctatcccatccctaacaggtaaccactaatattagtcccttgcttatttttccaaagacattttatgcttatgcaagcaaa--caagtaataatatataatatatttttttccttttacacaaattttg-------acatatgctttcctacaccttactttcttacacttaaccacataccatggacaccctcccataaagatgtattaagagcttc-ctgtgtcttttttTTTTATT a score=1254 s hg19.chr6_ssto_hap7 1285194 141 + 4928567 tcagagaa---caattttgcatcatgtaaca--------------------------------------------------------------------------tcatatggaaaagctgt--agtgaccccactcctatatgcatattctagggaaactcacatatctctgagagcaggaggcaatgtcccaggatgttcattgcagtga-ggtctaca s canFam2.chr12 71629287 217 - 75515492 TCAAAGAAAACCAGAACTATATAATGTCACAGAAGCTTTAAAAGGGGGGCAATAGGGGGAGGAGTACtataaaacaatgcaatcacttcagagaacaattcagcatcatgtggtagagatgtgcagtaattccactcctataaacatatcctaggggaacttacaca----aggaaccaaagagagaagccctagaacattcactatagaaacaaactaga a score=8826 s hg19.chr6_ssto_hap7 1285335 195 + 4928567 atagagaa--aatctaaaggtcaatgaagagggaaagagaagaattgtagtatattcctcccatggaatactatccaccaatgaaagcaaatgaactatttgtatgaacatagattcatgtcatagaacatgttaactgaaaaagcaagcaaatgaatgataaaattagccagaaacaatttataagaagtctaaaa s canFam2.chr12 71629696 185 - 75515492 agaaagaaacaaactaaaggtcaatggagagag---ggaataaattgtagcatatt---------ggatcccatctcataataaaaataaatgaactatttggataaacatggattcatttcatatataatgttaaccgaaaaagcaagctacagaatgatggattcagagagaaacaatttatacaaagtcttaaa a score=2101 s hg19.chr6_ssto_hap7 1285861 46 + 4928567 CTTAGTAAAAATATAAAGGCATACACTAAATTCAAGTCACACATCC s canFam2.chr12 71630025 43 - 75515492 CTTAGTAAAAA-ACATACCTATACACCAAATTCAA--CACACATCC a score=11030 s hg19.chr6_ssto_hap7 1290285 343 + 4928567 ttctgtacttgtctgagaatgaccccaaaagATTTTTAAAGGCCAATTC-TTTGGCTACCAACCCTATTTTGCCCAGGCATGGACATGGAGCAGGTGAACACTGCCTTTACCTGTGACATGCCTGAAGATTCTGAGACCTACGTGAATCAGGTAAGCTCCATACACAGAGGGACACCCACTCTCCCACCCACTT-ATTTTCTGTATCTTTTCACACTTCACTTCTTCATTCCTCCCTCTGGCTGTCTTCCCTCTTTGGGGTCTT-CTAGTCCTAACCTCTGTCTCCTTCCAGGTGACTAGAGCAGGCTGGTTTGGAAC--AGGGC-------------TTGTGTCGGATGAGAATTGTGCC s canFam2.chr12 71594091 347 - 75515492 TTTTGTCCATATCCGAGTTT-------AAGGAACTTCAAGGACAAGTTCACGTGGCTGCCGACC-TACCTGGCCGAGGCCCGGACGCTGAGCAGGTGAACCCCGCCGTCAC-TACCAGGTGCCCGAGGATTCCCACACCTACCTGCATGGGGTACGCTCCAACCAC---GCGGCACCAGTGACCCCGTCCTCCTGATTTCCTGTGCCTT--CATACCTGACATCTTCACCCCTCCTGTTGGGTGTCCCTCTACTCTGGGGTCTCGCCAGGACTACCCTCTGTCTCCTTCCAGGTGACCCGAGCAGGCCGGTTTGGCACCAAGGGCTTGGCCGTCATATTTGTGTCAGAAGAAGATGATGCC a score=14639 s hg19.chr6_ssto_hap7 1290630 724 + 4928567 GATCCTCAGTGATGGGCAGCATCACTTTAAGTTCAGTGTTAGGAGCTACCTGCTGAGACAGACGTCTCCTCC-ACAGTGAGTGCTGATTTCATGAAA-----CCCTTAGTTCCTC------CCTATTCCTTACTGTGTCT----TCAATCCCATCATGTAGGTCATGGGCACTTAACGCATAATGAACAATTGACTGCTTCATGCCCCCTGGCCGTTGATGCTGTGTTGGGACGTTTTGCTGCCCTCTATGTGGGGTCTGTGCCTTTTCTCAT---ATTACATCTCTTCCACCACGCCCAAGTCCATCCTCTGAACCCAGGCAGTACACCAGCATCTGCATGTGT--GCTGTGTGTTCCTGCC---TTGCTTTGTCCTTTCATGCCTTATTCTCACTGTGCCATGTCTCCTTCTCAGTTGAACAGATGCAGTAGGAGACTCGC---TCATTCTGGAATGTGACCATCTGCCCTTCAGGAGAGGACAGCAGGGTGTGGGTGAAGGAGACCCTGCTGCCCCCACACCT--GACAGCCTCCACCACCCCCTGGCTTTCCTCTT---CTGCATCAGCACCACTCCCGAACCATCA-TTCCTGATCG-TCAGAATTTTTAATGTAAC-TAAACATGAAACACAAGTGCATCTGCATTATGTGTGGGTGCTCTCTCCCTTTATTGTATTTGGGGTAAGATTATTTTAGGGCATGGTCCAGGGTAAATTCCTGTA--------AGGCCTGGATGCCCTGCTGTG------AGGTCAAAGG s canFam2.chr12 71594647 716 - 75515492 GATCGTCACTGAGGTGCAGGGAGGTGCTGAGGGTAGAGCAGTGAGCTGCCCAATGACACAGACACTTCCTCCTACAGTGAGGATGGGCCTCAGGCAACTGGCCCCTCAACTCTTCAGTCGATTTGTTCCTTAGTGTGTTTGTTCTGAACCATATGGTGCCTATACCGGGCACCCGAGGCATGAGGGGC--CTCACAAGTTGCTGCCCCCGATC-------------TTGGGATGTTT-----ATTCCTATGTGGGGTCCCTCTTCTCTCTCATCCAATTATTCCTCTTTCTACAC-CCCGTGTCTCCCCTCTGACCCCACATCCCACACAAACACCCGTGTGTATAGGGTCTGAGTGTCTGCCAATCCACGCGGCCTCTTCACGCCTCATTGTCCCTGTGTCACGTTTCCTCTGTGGATGTGCGGCCACGGGAGAGGGCTCACCCGTCCTTCTGGGATGTGACACTCTG---TTCAAGAGACA------------GGCTGAGGGACACACTGCTGCCACCTGCCCTGGGACCCCCACCCCCGCCCCATGGCTTTCTCCCTGTGGTGCGTCACCACCACTCCTGGAACCTCATTTCCTGATTTCTCAGAATTTTTCAAACAATATTAAAATGAACCGTGCATGCATCTGTGGTACCTGTGAG--------------------TTTGGGGTGAGGTTG-GTTAGGGCATGATTCGGGGTTGATTCCTGTAAGGGCTTTAGGCTTATGTACTGGGCTGTGGAACCCAGGTCAGAGG a score=48218 s hg19.chr6_ssto_hap7 1291354 1423 + 4928567 GGGACG-------GACTGCAG-AGCCCTGGCTCCCCAACTACCTGCCTATTTCCGGCCCTTTGTTGGGGTCTCTTCTGCTTTATC------------------TGGCCTGAGAGAGGCTGGGATGTTTCTGATCCTGGGGCTCCTG-GTGGATGGTGCGCAGTATTTCCAGGGATGGAGGGTGCTGTGGGCACTGGTGGGAAGCTTGAGTGTCTCCACCCAGGCTTTCTTGGTGCCTCCTCATCTATTCCTTCAAATTCTAGACCTTGAGCACCAGGGCCTGGGC--CCCTGACCCCCTCCTGCCCTTCCAGCAGGGCCTGGTCCA------------GCTCCAGCAACTTCTCAGCTTGGGCCAGCTCAGCTGTGTTG-GGGGCTCATGGCCCTG-GTGAGGGGG--AGTGGTGGAGGGAGCATCAGCCAGGGCAGGGGGCTGAGGCCCTTGGAACCTGTATTGCAGGGTCTGGCTGTAAATGAGGAATTCTACCTC--------CCTTTCCCTTTTTCTAGCCCATTAGCTTAAGGCCTCCTGTACTGAGAAGCCCAGGGAGCCCCTTGTCTTGGGCATAGGCCTCTGGGGGGCAAATAGAGATCCCTGGCTCAGGGAGTATAACTGGATACCTTGAACAAGGATATGGGGTCACTGGAAAGAGAGGACCGGCTGTCCCT--CTCCGCTAAGAAATAATTAACTGTTAGATGAGGGGGAATTTCTGTTCAAGGGCTCTGTGGACTGTGCTGCTCTGGAGGGGG---TGGGGAGAGAGAGCCCT-GAGGTCTGAGCTGGGGTGTGGTTGGGAAGGAGCT-GAGAGCTCAGAGCTGGAACTAGGCAAGGAGCTGCAGGGGTGAGGGTGGT-----------GCAGG---------GTGGGATTTAGAGGATTTCCCCTGACTCCTGTGCTGATCCCCTTCACGTCCTCCACCCCCACCCTTGGTGTCCGTCAACATGCTGGGGTGACCTCATCTTCCCACTGTCCCTGGAGCTGTTCTACTCTTCCACGCTTGCCTTGGGGTTTTCAGAGCAGCATCTTTGTGAGTCCTGGAGAGCTAGGGACCAGGAGGGCAGGAGGAGGTGAAGACAACAGCACCGAGAGATCCTGGA-AGAGAAAGGACCATGGTAGCTGAGGCAGGGAGCAGTCTGAGTTGCCTAGAAGACACCAAGA----GTTCGCTCCCTCCAGGCCTTGGCTTTGCTTCAGCACCTGGTGCTGCATAGGCCCCACCCCTGCCCTGCTCTGCTGCCTCCACCTCCCTCTCAGCCTGGTCCCAGACAGAATCCAGACCAATTCCTGTTTCTGATGTGAAAAATGATCCTGCCAGTTTAGGCAGAGCTTGCTTTAGAGCACTGGTGCCCAGCCTTCCACAGGTCTTGTGTCTGTTTTTCTTGGCACTGGGTTTCTtctcacttattcttctgaattggcaaggcaggaattacatcactagtttgcagatgaggaaactgaCTCGTATGGGCT s canFam2.chr12 71480084 1328 - 75515492 GGGATGTGACTAAGACTGCAGAAGCCATTGCTCCTT-GCTACTT---CAATTTCTGCCCTTTGTGAAAGTGTCTTCCCttttttttttttttttttttttCAGTGGCCTAGGAGGGGCTGGGATGTTTCTGACCCAAAGGCCCCAGTGTGGGTGGTGTGTAGTGTTTCCAGTGTTGGAAGGTAAAATGGGAACTGATGGAAAGTTTAGGCGTCT---CCTAGGCTCTCCCGGTGTCTCCTCATCTGTTCCTTCAGCTTCTGGATCTTGAGCACCAGGGCCTGGGCTTCCCAAGCCCCTTCTTGCCCTTCCAGAAGAGCCTGGTACAGCTCCAGCTGCTGCTCCAGCAACTCCTCAGCTTGGGCCAGCTCAGCTGTGGGGCGGGGCCTGGGACCCTGAATGAGGGGGGCAGAGG-GGAGGGAGCATCAGCCAGGGCAGGAAGCTGAGG------------------------CTTGCTGGAAGTCCGGTGTTGTGCCTCTCACATTTCCACCCCCTTTTATTAA----------TAAGGTTCTCTGTACTGTGAAGCGAGGGTAGCTTCTGGTCTTAGGCATAGGCCTGTGGGGGGCAGTTTG-------CGGCTCAGGGGTTA-AACTGGACTCCTTGTGCAAGGA----AGGATATGGAGAGGAGAGGACTGGCTGTCCCTCCCCCCACCAAGAAATAATTAACTGTTAGAGGAGGGGAAATTCCTGGTCAAGGACTTCTTGGACTCTGCAG----GGAGGGAGGGCTGTGGGGAGAGAGCCCTCGAGGT-----GTAGGGCGT-GTGGGGAAACTGCTGGGGATCTGGGAGTTGGGACTAGTCCAAGGACT---GGGTTGGGGTTGGTATCTATTTGGAACAGGCCTGTGAATATAAGATTAAAGGGATTCCTCC--ACCCCTCTGTC--------------------TCCCTACTTTTGGTGCCACTTACCCT-TGGGGGTGACC---TCTTCCCACTGCTTGTGGAGCTGGTCTGCTCTTTTGTGCTCGCCTTGGGGCTCTGGGAGCAGCACCTCCAGGAGCTCTGGGGGGCCAGGGGCCAGGAAGGCAGGAGCAGGC---GACGGCAGCAACAGGAGAGCCAGGGCAGAGGGAGTACCATGGCTGGTGTAGCAGGGAGCTGTCTGAACTGCCCAACAGCCACCAGGAACTGGCTCCTTCCCTCCAGGCCTTGGCCTCGCTTCAGTGACTGGCCCTGCCCAGG----------GCCCTGCCC--CTAACTTAACCTCCCTCCCAACCTGGCCCTAGACAAGA-------------------CTGATGTGAAAAA-GTTCCTGCCAGTTGAGGCAGAACTTGCTTTATAACAC---------------------TCTAAAAACTGTTCTCCT--------------TTCTCAGTTCT------------GCAAGGTAAAAGTTACATTGCTGGTGTGC-----TGGAAACTGGCTCAGAAGGGTT a score=6321 s hg19.chr6_ssto_hap7 1292790 152 + 4928567 CTCACTGGGCAAGTGTCTGTCAGGGCCAACTGTGGGCCAgatgtgcccagggctctatagctagctggtggaagggcctggagggttcatattcaggtccacctgacttgaaaactca----tattGACCTTACTTAAGTACTGATTCCCGATTTA s canFam2.chr12 71482362 150 - 75515492 CTCATTCAGCAAGTATCTCTTA-GTCCCTCTCTGGGCCAGATACgctcaagg-tctgcagctggttggtgggaaagcctggagaattcattcccaggtctacctga----aaagctcagatctattgactTGGCTGAAGTAATGATTACCCCTTTA a score=23737 s hg19.chr6_ssto_hap7 1294735 873 + 4928567 acatccaacccttcttccccattcttacctcagctgacaaccttgcctcctacctcactgagaaaactgaacacattagaagacaacttccccgattcc-accactgtctgctcatgcatttgcagctgcacc-acatgtcaggcatt--------ttaccacgggagggattgctgggggttaacaattctgctccc--agtcagagccagtccctcttctggtgccccaaacatcatcccttctcatctacttaaagttgtcagttcatcaactagtatctttttttatctttatcatcaactttttccctctc---------tccccactggatcattgtggcagtcatgagaatgcacatcccagcccctcagctacaggaagcagaatcga-tgatgaccccagctcttgaagcttgaaatctattgccacatttgctctgatcccacacctgccccctgatcttttccagccaatgattgaggaaagcagggcagaaactaaggcaggaatatttctcctctgaaggctgactgcagccccagggctccctgcctcctttactaaatttcccttagcctgcacagggtctaggatgcttccagctgaacttcctgccctctctccttcactggggctcagagttgcagtgtggtctgatggctctcccagtgttttctgtctctctcctgaatttctctcacaagtatttccctgaataaatcc------ttgcacatttactaccgtattgggctctgctcctcaggggaccctaactaacccaAGCGGTATGAAGGGTGACCCATGAAAACAGGCA-AAAATGGGAATT----TGAAATAATCTTGCCCACTGCCTGGCAGGCCAAGAGGATGCCACCCGGGTTGGTGGGGGACACAG s canFam2.chr12 71597881 853 - 75515492 acctccaacacccagccccc--tcttctctctgctaatgatcttgtttcctaagtcactgaacacacggaacacattagaggacaatttcacagatttctcccaccatctactcatgtcctagcacctgtacccacttgatgggccttcttgtcctttagcacaggtg---------------acccatccagttgtgtgagccagagccagtccctccactgctgcccaacacctcatcccttcttatcgacttacaagtcctggtccagaagtta--------------cttccccgttaacattttcctcatcggtgttggtcctcaactagatcattgtggtggccgtgacaatacacgaccctgactctcagcttgaggaagtgtaactgagccatggcctcggct-gtgtgctctcaaatctgacgccatctctgcccagagatgacactt-cctatggaattcctccagccaatgcttgggaacagcaagg---aaactgaggcaggactcttcctcttctcccggctgacctgggctct-ggactccccgacaccctgg-tgagcttgccttactctgcactgggtctagggtgcttccagccaacctcccttctctctctccttccctcagcttcagactggcattaagatctgatg--tctcctagc-ctttcgggctccttccccatgtcttctcacaaggagttctcctaaccaatcCAATTCTTGGCATTATCA-TGCTGTACTTGTGGCTGTTCAT-ATGGGACACCAA--AACACAAGTGGCATCAGGAATGGCCCAAGAATGGGGGCACAAAATGGGATTTGGGACGAGATGAGCTCACGCACTGTCTGGCAGGACAGGAAGACACTA-------TAGt-ggggatacag a score=12288 s hg19.chr6_ssto_hap7 1300356 256 + 4928567 ctcagtgaagtcctcagatgatgcaggcctaggctgacaac---------------tggactgcaaccttgtgagaggccctgagccagaagcactcaggga--aacctctcctggatttctgatcattggaaactgtgggagatgaggaatatttgttgttctgagctgctaagttttacataatttgttatgcat-agtaaataactaatacaT-TTTCACAAGACAGGATGCATTATTACATGTTAATTTGCATTTGCTCTAAATTTATCAT s canFam2.chr12 3982868 274 + 75515492 cccagtcaagccatcagatgatgcagtcct-gtctgacaacccagtcctgtctgacttgactgcaacccagagagaggccctgagacagaagcactcaggtataagcctctcctggattcctgaccctgggaaactgtgggacacaatatatatttgttgttctgagctgctatgctgtggataatttgttaggcaccagtacataactattataGAgtccaaagaagagaatgaagtattgcactttaatttcgattggctctaaattaactat a score=9641 s hg19.chr6_ssto_hap7 1300928 269 + 4928567 gacattaaacat-gtaacttagttttaaaaggaaaggagaagttccatggct----gaagaggatgtattttattatcgttcacaatgatcactttacttgaacttcaatttccaactgtgtcccaattaaacacaaaaggaagaTTCATCCCTTGCTAGAGTGattctatgatggccc-caacaaccacctcctggtcattcaccttcccccagttattcaaccaa-ctctaatgtaggtgctgctgtgaaggaatttagcagacataataaagg s canFam2.chr12 3983142 274 + 75515492 gatattaaacatcatctattggttttaagatttaagaagaatatctatgtctaagggaacagaatgcatattattaccattcacaacaatctatttatttggagtttgatttctgacggtaaaccaattaaaca--aaaggaagaagcaggctGTCCtaggcagatgctaagatggcctgccataactaacctctggttattcatattcttccagttgttggatcaaacactaatccaggtgctagcgtgaaaggactttgcatatgcagtgaagg a score=8520 s hg19.chr6_ssto_hap7 1301239 366 + 4928567 ctgtcctaatcaggagagtccttgaaaggactgggttcttcctgagcatagagattcacagtgtgagagggattcagcatgaggggtttcctccactgtgggctttgaaaatgaaggggctgtgtaggaaacaacaccggtgggcaccaggaattgagtacagccctccctgttctctacattgacagccagcaaggaa-cagggacctcagtcttaaaactgcaagaaagcacattctgccacc---tctgtataagcctaaaggaggat-tcaaaatgaagactcaga-----tttgggaagcctggaacagagattccatctacatcatgcccagatttctgac-taaggtactataaacagataaatgggtgt s canFam2.chr12 3983718 351 + 75515492 ctgacctaatcaggtgagcccttaatagcacagggtgcttcctgagtgaagggactggaagagtgagcaggattcattgtgagtgg-------------aggctttatgatggaaggggctcc-cggcaagcaatgctggtggccac-aggagctaagaacagcatccc-----------actgacagcgtgccaggaagtggagactgccgacctccaactacaagaactggaattctgctaacagatctgtacaagcttgtagggggacctcaagctctagttgcaaacactgtctgtgacatgctgaggagaagacccctcagcatcactcctggactgctgacctacagaactgtgcacatacacatgggtgt a score=7337 s hg19.chr6_ssto_hap7 1301950 253 + 4928567 gggtgttgtttaaagcca--atgtttgtgat-aattttttacacagtcttataaaattcatacaCAGGCTCAACAGAC------------TAATGGAATGAACTGATG----AATTGATATATACACTAGTTACATAAAATAAAATCTTTCTGAACTTTTTCAGTGTTTTGCATTTTATAATTATCT-GTGATGCAATTTAAT----ATACTCATATTTCattcattcagtcaacaaaaattaatttagtccctacaatgaaccaggtAT-------------------------CCCCTCA s canFam2.chr12 3984069 291 + 75515492 ggttgt------aagtcactatgtttgtggttaatttgttatgcagcaatagaaaaccaccacaTAGCCTCAATGCACATCACATTTTCCCAGTGGAATGAATGAATGTATGAATCGTCGTGCACACTAGTTGCATGAAATAAAATCTC-----ATTTTTCATGTATTTTCCATTTTGTGATTTTTAAGTGATGGGATTAAAATCTAATAGTCATATTTCattcattcattcaacaacaattaatttagtgcctactctgcaccaagaatggctttctacactaggggtacagctttcctca a score=25336 s hg19.chr6_ssto_hap7 1302203 1149 + 4928567 TATGCTCACGTGCCTGACATTCTAGAAGCTTCACAAGACCAaggtggagccactggagtgttttaggtggagaaatgacacactttgactcacattagcaggaccactat-------ggAGAGAACAGTCACG--TAGCAGGTAACGGGAGAGTGCCAGTGTCACAATTCAGGAGTGACAGTGTGATGGGGACTAAGGGGAGAGGAGGGGCTGAGTGATAAGAGGGACGGAGGGAAGGGCTGGAGAAGCAGTAGGTGAGGAAAAGGAGTAGAGGGATAGAATTCAAAAGCAGCACAACTCTTAGGTTTGAACACTTTTTTTAATGGTATTTCAATAGATCC--ATCTACAGAGCCTCGCAGGGTGTTACTTGCAGTTGGCCTTTAATACCTTAAGTGGGTCTGCTTAAAAACTAATTGTTT--TTATGTTAATCAGGTTTTAAAAATACTAAGTGTTCCTAAGAAATATACACACCACTTAGATGTGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTGGTGATGGACATTGTGACTGCATCGAGCGCTTGCAACTTTGAGGTGAATGAAGTCTGTACTGACTCCTGGTTGCAACACATAGGAACACAGTGGCTACTTTGTATTGAGGAGATGTCCTGGAC-TCACAGA-AACTCAGGGCTATGGAATAAAGGTAAATTTAAAACACCACAAGCGGGAGTCACAGATACCTTGTTTGCAAAAGTGAAACTTAGGAGCTTTGTGAGTC------CTGTTGTAATGCTTTTAGACACTTTATATATCAAGGGGCCAAAGTCACATGTTTTTACCGATTAGATTCCTGATCATTCAGGGGTTACCAAGATTCTGCTACCCAC-TGTAGTTAATACACAAAAAGCAAACTGGTCTCTATACTATCTCATG-----CACC-CAGGCACAACTTTTCCAGATTTaaagaaaaagaaaaaagaaataaaagaaaaaaaCCTCTGTCTCTACACCTCCATTCCCAGGGAGAGCTCCCTCTCTGGCACCAAGCTCCCTGGGG-TGAGTTTTCTTTTTGAAGAGTCCAG--GGGAACAGGTAAGCAGTGGGGAAGCAGGGAGTCCATTTCAGGGACAGGAATTCCCGGATGAAAAGTGAAAGGAGAGGGACGGGGCCCAAGCTGAGGGTTTCTTCCTGGT----TTCTCGG s canFam2.chr12 71598760 1087 - 75515492 tatgctcatgtgccttgtgttctagATGCTTCTCAAgagtgagatggagccactggagcattttcagtgaagacatgacacaacctgactcacatcagcagaattgctgttctgggtggtgaaagtggccctgggtggcaggtgttggggtggcagcagggccccaat-caggagTGA------GAGGGGGTGGAGCAGGACAAGAGGCCCTGAAGGAT--GAGAGACAGAGAGAAGGGCTGCAGACATAGGCGG--AAGGAGAGAAGCAGAGGTGAAGG-TTCTACAGCAGTGGAATCCTCACGTTTAAATCCGTAGTTATACAGATTTTTAATAAATTCCTATCTACAGGGCTTAGCAAGACGTTG---GCATCTAGTACGTGCTACCCTGTGTGCGGCTGCCTGAAAACCAATTGCCTCCTTATGATAATCAGAT------AATACCCAGAGC-----GGGAATACATATGCCCTTATCTTGGCGTTCCTTCCCACACGC--GCAATGCGTGGACGC-GGTGA-GGGCCCGGTGACGGCCCAGAACACTTGCCACTTCCAGGTGATCAACGCTTGTCCAGGCTTC-AGCTGAAATA-ACAGCAACAGATGTGCTTCCGTGCCCTGAGGAGACGTCCCGGAGGCCACAGACAACCTGGGGCTCGGGAATGGAGGTAA--TCGGGACGC----------GGTCACTGATCTAGCGTTTGGGACAACGGAA-----GAGCTCTGTGAGTCTGAGCGCTGCTGTATGGTC------CCCTGTCTGCAGGAAGGG-CCAAAGTCAC-----CCCACAGATCAGACTGCC-ACTGTTCAGGGGCTGG-GAGGTTGTGCAGCACGCCTGGGGTCAA----CAGGAAGGACACGGGCCTCAGTGGGACTCCGTGGCTGCCGCCTCAGACACAGCTTCTCCAGGT------------------------AAAGAGAAAAGCC-CTGTCTCTCCATCTCTGCTCCCAGGGC-AGCTGACTGTGTGCTGTCAGAGTCCCTGGGGATGCGTTTCCTCCTAGAAGAGTCCAGAAGGAGACAGGTAGGCGGTGGGAGGTAAGAGAGTCCAGTTCAGCGA---GTATTCTGGAAAGGGCAGTGAG-GACCAGGGGCAGAGTCCAGCCTGAGAGTCTCTCCCTAGTAGTGTCCTCAG a score=16838 s hg19.chr6_ssto_hap7 1303352 454 + 4928567 ACAGCTCCTGGACCAAGACTCAGGGA-ACATTGAGACA-GAGC---GTTTGTCACAGGAGGAGCGGGGTCAGGGCGAAGTCCCAGAGCCCCAGGCATGGCTCTCAGGGTCTCAGGCCCCGAAGGCGGTGCATGGGCTGGGGAGGTGCAGCATTGGGGATTCCCCATCTCCGCAGAGTTTCTCTTCTCCCTCTCCCAGCCTGCGACGGGTCCTTCTTCCTGGACACTCACGACGCGGACCCAGTTCTCACTCCCACTGAGTGTCGGGTTTCTAGGGAAGCCAATCAGCGTCGCGCGGCCCCGG-TTCTAAAGTCCCCAC-GCACCCACCGGGACTCGG----------------AGTCTCCCCAGACGCCGACGATGG-GGTCATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCGGGGACCCTGGCCCTGGCCGAGACCTGGGCGGGTGAGTGCGGGGTCAGGAG----------------------------------GGAAACGGCCTCT s canFam2.chr12 71616264 502 - 75515492 ACAACTCCCGGGCCAGGACTCAGGGAGACAGTGCGACAAGAGCCCTGTGTGCCCTAGGTGA---GGAGTCAGGGCAAGGTGTCGGGACCCCGGAC-TGCCTCTCAGGCTCTCAGGCCCC-AGGGCGG-GTCCGGGGCGGGGACGCTCAG-GCTGGGGAGTCCCCACCTCC-CCGGGTTTCACTTCTGCGTCTCCCAACCTGGCTCAGGGCCCCCTGCCTGGAGACTCGTGACGCAGCCCCAGCGCGCACTCCCATTGGGTGCAGCGTTTCTGGAGGAGCCAATCAGCGGCACCGGGTCCCGGGCTCTAAAGCCTCCGCCGCCGCCTCCGCCCCCCAGTCCAGCGGCGACGGCCAGTGTCCCCGGAGCCCGGAGATGGAGGTGGTGATGCCGCGAGCCCTCCTCGTGCTGCTGTCGGCGGCCCTGGCCGTGACCCTGACCCGGGCGGGTGAGTGCGGG--CGGGAGCGAGGGGACCGGCGGGCGGGGACGCGGGACCCCGGGAAGCCGCCTCT a score=112375 s hg19.chr6_ssto_hap7 1303841 3172 + 4928567 CAGGACCCGGGGAGCCGCGCCGGGAGGAGGGTCGGGCGGG-TCTCAGCCCCTCCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCAGCACCGCCGTTTCCTGGCCGGGCCGCGGGGAGCCCAGCTTCATTGCCGTGGGCTACGTGGACGACACGCAGTTCATGCGGGTCGACAGTGACGCCGTGAGTCTGAGGATGAAGACGCGGGCGCGGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCTACAGACACTGGGCGCCAAGGCCCAGGCACAGACTGACCGAGTGAACCTGCGGACCCTGCTCCGCTACTACAACCAGAGCGAGGCGGGTGAGTGACCCCGGCCCGGGGCGCAGATCACTTACTCCCCGCTCCATGCCTCACGGACGGCCCTGGTC-CCCTGAGTCTCCGGGTCCAAGATCGACCCCGAGGCTGCGGGACCTGCAGAGATCCTC------------------GACCCGGGAGAGC-CCCAGGCGCCTTTACCTGGTTTCATCTTCAGTTGAGGCCAAAATCTCCGCAGGTTGCTAGGGGCCGGGCCAGGGCTCGGTGGGCGGGGCTGACCGCGGGAACTGGGCCAGGGTATCACATCCTCCAGGGAATGTTTGGCTGCGACCTGGGGCCCGACGGGCGTCTCCTCCGCGGGTATGAGCAGTATGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGATACCGCGGCTCAGATTACCCAGCGCAAGTATGAGGCGGCCAATGTGGCTGAGCAAAGGAGAGCCTACCTGGAGGGCACCTGCATGGAGTGGCTCCGCAGACACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCATGGGGAGCCTGCTCGATCTCCTGTAGATCTCCCGGGCTGGCCTCGCACAAGGAGGGGAAGAAAATGGAAACACCACCAGAATATCGCCCTCCCTCCTGTCCTGACGGAGAGGAATCCTCCTGGGTTTCCAGA-TCCTGTATCAGAGATTGACTCTGAGGGCCCACCCTGCTCTTCCTG--GGACAATTAAGGGATGAAGTCTCTGAGGGAGTGGAGGGGAAGACAATCCCTGGAAGACTGATCCGCGGTCCCCTTTCACCCCACAGCAACCT--TGGGCACCAGGACTTTTCCTCCCGGGCCTTGTTCTCTGCCTCACACTCAATGTGTCGGAGTCTG-ACTCCAGCTCCTCTGAGTCCCTTGGCCTCCACTCAGATCAGGACCAGAAGT-----------------------CCCTGCTACCCTG--------CTCAGAGACTAGAACTTTCCAAGGAATAGGAGATTATCCCAGGCGCCTGTGTCCAGGCTGGTGTCTGGGCTCTGTGCTCCCTTCCC-CACCCCAGGTGTCCTATTCATC--AGGATGGTCACATGGGCGCTGCTGGGGTGTCCCATG-AGGAATGCAAAGTGCCTGAGTTTTCCGACTCTTCCTTTCAGACCCCCCCCAAGACACACGTGACCCACCCCCC--TCTCTGAACATGAGG-CATAACGAGGTCCTGGGTTCTGGGCTTCTACCCTGCGGAGATCACATTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACATGGAGCTCGTGGAGACCAGGCCCACAGGGGATGGAACCTTCCAGAAGTGGGCGGTTGTGGTAGTGCCTTCTGGAGAGGAACAGAGATACACATGCCATGTGCAGCACAAGGGGCTGCCCAAGCCCCTCATCCTGAGATGGGGTAAGGAGAGAGATGGGGGCGGCCATGTCTCTTAGGGAAAGCAGGAGCCCCTCTGGAGACCTTTAGCAGGGTCGGGGCTGGGTCCTGGAGGTCAGAACCCTCACATTCCC----CTCCTTTCCCAGAGCCCTCTCCCCAGCCCACCATCCCCATTGTGGGTATCATTGCTGGCCTGGTTCTCCTTGGAGCTGTGGTCACTGGAGCTGTGGTCACTGCTGTGATGTGGAGGAAGAAGAGCTCAGGTGGGGAA-GGGGTGAGGAGTCGGGTTTGAGTTTTCTTGTCCCACTGGGGGTTTCAAGCTCCAGGTAGAAATGTGTTCTGCCTGGTTACCGGGAAGCACCATCCACATTCATGGGCCTACCCAGCCTGGGCCCTGTGTGCCAGCACTTACTCTTTTGTAAGCACCTGTGACAATGAAGGACAGATTTCTCACCTTGATGATTGTAGTGATGGGGATCTGACCCCAGTAATCACAGGTCAGG--GGAAGGTCCCTGCTGAGGACAGACCT-TAGGAGGGCAGTTGGTCCAG-GACCCACATCTGCTTTCCTTGTTTTTCCTGATCCTGCCCTTGGTTTGCAGTCACACATTTCTGGAAACTTCTCGAGGTTCCAAGACTAGGAGGTTCCTCTAGGACCTCATGGCCCTGCTACCTTCCTGGCCTCTCACAGGACGTTTTCTTCCCGCAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATCCCTGAGATCCTTGGGATATTGTGGTTGGGAGCCCATGGGGGAGCTCACCCACCCCACAATTCCTCCTCTAGCCACATCTCCTGTGGGATCTGACCAGGTTCTGTTTTTGTTCTACCCCAGGCAGCCAAAGTGCCCAGGGCTCTGATGTGTCTCTCACGGCTTGTAAAGGTGAGACCCTGGGGAGGCTGATGTGTGTGGGTTGTTGGGGTAACAGTGGATATAGCTGTGCTATGGGGTTTCTTTGACTTGGATGTATTCAGCACATGATGGGCTGTTGAAGGTGTGACCCCTCACTGTGAGTGATATGAATTTGTTCATGAATATTTTTTCT-ATAGTGTGAGA-CAGCTGCCTTGTGTGGGACTGAGAG--GCAAGATTTGTTCATGCCTTCCCTTTGTGACTTCAAGAACCCTGACTTCTCTTTCTGCAAA-GGCATCTGAATGTGTCTGTGTCCCTATAGGCATAATGTGAGGTGGTGGGGAGACCAGCCCACACCCGTGTCCACCATGACCCTGTTCCCCACACTGACCTACATTC-CTTCCCCGATCACCTTTCCTGTTCCAGAGAAGTGGTGCTGGGATGTCTCCATCTCTGTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTACTTCCCTATT-AAAATTAGAATCTGAGTATAAATTTACTTTTTTCAAATTATTTCCATGACGGGTTGATGGGTTAATTAAAGG s canFam2.chr12 71616838 3043 - 75515492 ctgggccccgggccccgcggcgggagg-gggtcgggcggggTCTCA--CCCGTCGGCTCCGCAGGCTCCCACTCCCTGAGGTATTTCTACACCTCCGTGTCCCGGCCCGGCCGCGGGGACCCCCGCTTCATCGCCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCGGCCACTGGGAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACGGGGAGACGCGGAAAGTCAAGGAGACCGCACAGCTGTACCGAGTGGACCTGGACACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTGAgcggcgcgggcccggggc-cggggcAC---------GACCCCCATCCCCCCGACCGGCCGGGTCGCCCCGAGGGTCCGGGTCCGGGCGTCACCCCGAGTCCGAGGCCCCCGC-----CCCTCCCCCTCGTCCCCGTCCCGAACCCGCGGGAACTCCCGGGAGGTTTTACTT--------------------------TCTCTTTGGACTGATTGGCGGCCTGTCGGGGCG---------------------------GGGCCAGGGTCTCACACCATCCAGACCATGTACGGCTGTGACCTGGGGCCCGGCGGGCGCCTCCTCCGCGGGTACAGTCAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACGCGGCGGCGCTGATCACCCGGCGCAAGAGGGAGGCGGCAGGTGATGCAGGGCACCTGAGGAACTACCTGGAGACGACGTGCGTGGAGTGGCTGCGGAGGTACCTGGAGATGGGGAAGGAGACGCTGCTGCGCGCAGGTACCGGGGCCCC----GGGCCTCCCCGATCTCGCCT---CCACTAGGGAGGGCTTCCCTCCAGGAAGGGAAT---ATGGACTCAGGGTCAGAACACCGCCCCTCCCACGGG--TGGGGACAGGGGATCCGCCTGGGTGTTGATAGTCCTACTAGGGTGACTCACCCAGAGG-------CCGCTTTTCTCGAAGGGCAATGGAGCAATCCAGGGTCTCCGGGAG-GCAGGTGGAGGCCATCCTGAGATAACCG-CCAGTGGTGCCCTTTGACC---TGGAAGCCTTGTGAGGACCATGACTTTCCCT-CAAGGCTTTCCTCTCCAATGAAAAC---ATAT-TTGGAGCTTGAACTCGGAGTTTTCTGACTCCTTCAGCCTCCACCATGGTCAGGACCATTAGTGTGCTCTCTACCTTAGACCTGCAGCCTCCTACCCTGGACTCTCTCCCTGATTCTAGAA-TTTCTAAAGATTAGGA---CATCCCAAA-------GGCTAGGTTGGTGACTGGGCTTTGTGCTTCTTCCAAGTGAACCAACTGCCCTGTCCACCCTAGGATGGTCACACAAATGCAGTCTCAGTGGACCACGCAGTTAACCAAAGTG--TGGGTTTTCCAATTCTTCTTCCTCAGAACCCCCCAGCACACGTGTGACCCGCCACCCCGTCTCTGACCGTGAGGTCACCCTGAGGTGCTGGGCGCTGGGGTTCTACCCTGAGGAGATCACCCTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACAGAGGTTGTGGACACAAGGCCTGCAGGAGATGGGACCTTCCAGAAGTGGGCGGCCGTGGTGGTGCCCTCTGGACAGGAGCAGAGATACACGTGCCACGTGCAGCATGAGGGGCTGGCGGAGCCTGTCACGCGGAGATGGGGTAAGGAGGGCCTCGGGGTAGAGCTTCTA-CTCAGGGCAAGT-GGAGCTCTTCTGGAGAATTTCAGCAGAGTCAGGTCTCAAGCCAGAGG--CTGGACCCTCATCCTCCCTCCGTCCCCTTTCCAGAGCCTTCCCCTCTGTCCACCATAGTCATCGT---CAGCATTGCTGCTCTGGTTCTCCT------CGTGGTCGCTGGG---GTGATTGGAGCTGTGATCTGGAGGAAGCAGCGCTCGGGTAGGGAACCGACTGAATACTC-----TGTGTTTTCCTGTCCTGTTGGGGGTTTC-----CTAGGGAGCACGCTGTCCTGCCTTGTTAACGGGAGGTGCCGTCCATACGCGATTACTCTCCCACACTGGA-GCTGTGTACTCACACTCACTGTGCAGCAAACACTTGGGAAAATGAAGGCCAGAGTT-TCGCCTTGGTGATTCTGGTGACGGGGACTGATTCCCAGCCGTCACAGGACAGAGCGGAAGGCCCCTGCTGAGGACAGACCTCCAGCAAGTCAGGTGGTCCAGTGACCCCTCACCTCATGGCTTG--TCTCCTGACCCTGACCTGGGCGGTCAGTCAGAA--TTCTGCAGAC-TCACTCTGCACCAGGACTGGGAGCTTCCTTGAGGATCTCCTGGCCCAGCCCTGTGCCCGGCCTCTCACATGATGTTTTCTTCCCACAGGAGGAAAAGGACCAGGCTACTCTCATGCTGCACGTGAGTATGCAGGGAGC-AATCCCTGAGACCCCAGGGG-AGTGTAGACAGGACCCCAT-GGGGAGCTCAC---CCCCACAGCTCCTCCTTTAGTCTCACCTCCTGTGAGCTCTGACCACGTCCTG--TTTATTCTCCTCTAGGCGATGACAGTGCCCAGGGCTCTGATGTGTCTCTGACAGCTCCTAGAGGTGAGACCCCAGAGACCCTGAAGTGGGGAGG--GTTGGGGCA-----------------------------CTGGGAACCAGATG-----AGCGCGAGG-GGGCTGTTGAGAATGTCAGCACTTA-TGTGACCCACCTCAATTTGTACTTG---ATTTTTTCTCACAGTGTGAGACCAGCTGCCCTGTG-GGGACTGAGCGATGCAAGATGTGTTCACATC-TCACGTGATGACATCAACAACCCTGGCTTGTC--TCTGCAAACAGTGTCAGGATGTGCCTGTGTCCCTAGGAGCATAATGTGAGGAGGTGGGGAGATTGGCCCACCC---TGCCCACCATGACCT--GTCCCTAATCTGATGTGCACTCTCTTCTCTGATGTGCTTTCCTGTCCAGCAGAGGGAGGGCTGGACCATCTCCATCCCTGTCTTTGTTTCATG-----TTGAGTACTAATAACTTACTACCCGATTGAAAATAAGAATCCCGATATGAGTTTGTGTTTCCTGAGTC-TTGGGATGTGGGGCTGATGAGGTAATAAAAGG a score=11021 s hg19.chr6_ssto_hap7 1307013 249 + 4928567 AGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAAGACATGAGAACCTTCCAGAGTCCACGTGTTTCTTGTGCTGATTT-GTTGCAGGGGAGG---------------------AGAGTAGATGGGGCT-GTGCCCAGTGTGTGCTCAGGCCACCATGGGCTTTATGTGGTCACAGCTCACCTGGGTCATCTTTGCTGCTCCACTGTCCTTGGCCCTTCAGTAGAACCTTGTCCCACCAGGACCTGTGATCACAGGGACTTGGATGTCA s canFam2.chr12 71620809 267 - 75515492 AAAAGATTTCTGAAATT-GAGAGAGCAAATAAATGGAAGCCCTGAGAACCTTCCAGAATCCTCATGTTTGCTGTGCTGAATCAGTTGCAGTTGGGGGCTGAAAGCTGTCAGGAGCCTAGGGGGGACGGTGCCAGTGCCCAGTAGGTGCTCAGTACATACTGGGTGAGTCGTGTTCAGGCCTCAGCGGGGTCCTCT---CTTCTCCG-TGTCCTTGCCCCTTCTATAGAAGCTTGTCTCACCAGGACCTGTGATCACAGGGACTTGGACGTCA a score=8683 s hg19.chr6_ssto_hap7 1307262 663 + 4928567 CCTAGGGTGGTCCCTACACATCGAAGTCCTTCCGGTATGAAGAGACAAATTTTCAGTCCCCTGTATCTTTTGCCCTCCTTCCAGGTCTCTTTCCTGGATTGTATTTTCCATCTTTTTCCCCAGCCTTCTTAAAGGAAGCAGATTCTGAAATTTGCAGAGAGGAGGGGTCCCATAGTTTCTCATCGTAGGTAACTTTCTGTTGGAACT-CCTCTTCTGCTTTCCTACTCT-TCTTCCTGCCTGAGTTGTAGTAATCCCAGTGCTGGCTCCAATCCAAACTCATGCATTTATAAAGCAGAGTCTGATTTAGATTTATATGGGGTTGGAAAATTGGACCCA-CAAGGCTAGGATTATCTTTCCTGAACAGAAAAATATGGCTGTGCGCTGCAGTGTGCAGGAGGGTTGGTGTGGGAGGAG-----GTGGGAAGGACACACAAGCAGCCCTGGTGAGAAAAGCACTGGCAGCACTGATG-TTGGTGTGAGATGATGTTGTTCTTTAGCTACGTTAATAAAGATAT--------TGCCTTTAGAATACAGAGGTGCTCTACAGTGAtcattcattcaactgacatttgttgtctgctaggtatatg--actgtttttgcatttagaaaacatcattaaagtaaaaacagaaaaattt-ctggccttgtggtgtatacgttctagatgc s canFam2.chr12 71621322 613 - 75515492 CCTAGGTCGTCCCCTGCACACAGGAGTCCCCGAGGTTTGGAGAGATGAACTTCCAGATCCATCCAG-TCTCCCCCTCCCTCCCCAGCTGCTTTCTGGATTATTGTTCACATCCT--------------------GAGGTAG--------------AGAGGGGAGAAGT--CAGAGGTTCTCCTCCTCATAAGCGTCCAGGAGTTTCTGCCTCCCCTGCTGCTCTGCCCTCCCTCCCCGCCCTGGGCCCCGTGATCCCTGTG---------------------GGATTTATAAAGCAGAGTGTAACGTAGATTTCTCTGTGGCTGGAGAAGAGGACCCAGGAAGCCCAAGGGCACGGTGCCTGAGGAGTGAACT----CTGTGCG-TGGTGTGTGCAGGAGAAACGGTGTGGGGGTGGGAGCTGAGGGAGGGAGGTGGGGGCAGCCCC-ATGAGGAGAG-AGAGGGGGCACTGATGACCAGTG---GCTGGTGGGGGGCAGGAGCTGCCACAGAACAGCTGTGCCCCAGGCGCTTCTAGAAGAGGGAGACCCTCTTCC-TGCGCATTCATTCAGCTG-TAACTGTCCTGTGTCACATGCAGGACACACTGTTTGCATCTGAGCAGCTCAGTGAGACTCAGGTGAGGCAAACCTGCTGGTCTCCTGGAGAGTATGTTCTAGTGGT a score=12499 s hg19.chr6_ssto_hap7 1308178 701 + 4928567 gtataagcagagtaggaacagaaaatgcttgagttagaaggtggcaagtgctgtgtggcaggtgatccagagggtg--ggctgtggggacaggaaggtggctgttgtgctgggtggtcagcatgggccttgttgcaaatgtgaccttggagtaaagatttgagggatgtgaggagttgtctacaaggatgtct-gggaaagttcttttcaggcaggggaaccttcagtgcagatgcactagggcaggaaattgt-ctgtgttcctggaaggaggaagaggccagaagggctgga-cacagagaaactgaagtgaggtcaaaggtgtggctagagcaggtagccctgaagggtgtgggaagggtgttgacctttgctctgaatgacatggggaggacagttttgaaaagtgggacatggtagggctcatcctttgaaagcttcttt-ctggctgctg--tgctgagaacagaattgagaggt---ggggaaccagtgatgcagtggggaaaatggtgggaaaggagtacagtattctaggatggacac-gttgcttaccttgactagggtgtgagcaggggaaatagtgagaagtgaagggattctggatgaatttgaagatggac-tcacagcacttgctaatggat------------gtgaga-agaagaatcaagga---cacccacagtattggactgagtgagcagaagggtggagctgctgtca s canFam2.chr12 71622283 682 - 75515492 gtgtAAGCACAGTAAGTAAGGGAGGTGTAGACATTGGAAGTAGGTAGGAGCCTTGAGGAAGGTGACCCAGAGAGAACCTGCTCTAGGACAGGGACggtggccaccttactgcagggattgggggagcctccctgagaaggtgacctgggagag------tggaggacat---gaattgtgtaggaggatgtctgggggaagttctttccaggca-gggaacctcca-tgctcaagctccagggcaggagcctgtcccatgtttgagggagggtgaggaggcccctggggctggagcagagagcaagggggatg-------acatgacgtcacgtcatggagcct--gaggacagtagaagggttttgagtttt-ctctgagtgagatgtggag-------ttataagaatgaaca------gatcaattcattgaa--tttctttaccagcacctgtttgctgcgtgcagaattgagaggtgaaggggagcaact-----agtagggaacctgtagg--acccagggcagtgtcccaggagggggatgggggctgaacat--ctggagtgtggg-ggggaagataataggaaatgagtgggtgctggatatgtttacaggtgaactttgcagcatttcctaaggcattccttctggggggtgagagggagggatcaaggagggcatccggtatttcagact--gcaaggagaagtgtgcagtGCCTTCCA a score=2383 s hg19.chr6_ssto_hap7 1308879 90 + 4928567 gtggagat-agggagactctggcaggagtaCACAGAGGAGAGGGCATCGCAGGCATTCA---ATGGAGGAGACAT-----CTATGAGGAATGCAGGTGA s canFam2.chr12 3993228 98 + 75515492 atggagatgaaggagacactggaatcaggacattgggaagc-agcatcacagacatccacttaggaatgtggaatctgggctataagaaatgcagctga a score=35723 s hg19.chr6_ssto_hap7 1314300 1889 + 4928567 CAGCATAgggaagcagttcctttagaattttagtcacaattaatggaagggtactgaaacctgctatttcccagttgaataacaggtcctggggatatagaaggtcttgccacaagttgaatccataactgctgctttcctggtaccaggg-agaacaggtttcctatcaaggactgggtagg-agtgtttgccaggcctgtatcagctattgcccaagtttccactttacaaaagtgccatgcatacatgcaacaacatagtgccttctccatgcatcccttaagagatgaactgcatgctatcttagggccagtacattatgagtccagtgctgcccctattgtggagccctcacaggagatgtctccaatggtacatgaaggcatggccctcattcctgataatgcttggtacttagatgcattgagccaaggtaaccct-gtgtatggacagtagtagctgcacaaccacagac----agtatctggtttgagatgggaatgcaacagagcagtcaatgggcagaactccaagctacatggttggtttgtacccgtgagccaccacctatagttctctgtacagacagtctggcagtacttaagggtcttacaatttggcttgcccaaagggcctgagatgattggtatataatttaaaaatccttatggggagctgatatgtggaaagacatTTGGAAAAGTCTACAGGAACCCACTGTGGACCTAATTGCTTCAGCACACTGGTCAGATTCACCTC---CCAGAAACATGGAGGCAGACATCCTAGCAAAAATTAG---AATACTGAGCTAGTTGATTAGGTACATAT-CACAGTGGGGATTTCAGTGCATGAATGGGCTGCCAAatagcaaagggagcaggattggctctctgctatgcagatttagtggtggcggtagcaaactgcttaatttgttcccgtctgtacctctgccacatcccacatacacctggacatatacataagacagccacccctgtgacagactggtagatagactacatcagacccttgccagtaatcttgagacgaaagtatgcactaacatgtgtatacactgccatgggattgttgcaagctttcccttgtaa--gagcaaaccaaacagccaccatcaggggcttggagcaactcagtgtcatgtaaggataccctccacatattgatagcaatcgaggcatgcatttcaccagacacggtgtccaagactggatgcatgaaagggacatagactgggtatttcacttactgtatactcccccaagcaacagggttgattgaaaggaaaaatggtattttgaaggcacagttttgagcactctcaaaatccaatatctttcatagttagacaaaga------------------ttttgcctcaagccattagaaaccttaatttagtTGAGACAAATATGGTGCTGGCACCACACCA-----ATGACTCAGGACCA----CCACAGAGATGGATCCATT---AACCATAATAGTAAAGAAAGTCCAACCAGATGCATCTCTGACCTGAGCAGATAAAAGGCCAATGGCAAAGGTTATTTAGAACTCCTCAAGATCTTGAGCCAGGG--AGGAGACACTTGAATGGGGGTTGGACTAGCAACTTCCCCTATGTTGGATAGAGCATTTCTTTCCAGACAGCAAGGAAT-TCCCTACCAACTAAAGTGGTCTCCATTGATCCTGCTGAAGTCTGGGCCAAAACACTCCACATACCAATAAACTGGAACACAGTCCCTTTTAAGAAGCACCCTGGCTGGCCATTTGACATGGTCCTTTGCTGCCCCTGTAACCTTACACATAATACCAGCGCCTTTGCCCCTCAGGCAACATGTTTGGTGTGTAC--------------TCCCAGCCCACAATCCTATGTTCCTAATCAACAGA-GATGGAGCTACCAG s canFam2.chr3 55146881 1882 - 94715083 caacatggaaaatcaactccattggacttttggtaacagctc-tgggagagagcagaggtacaacattctctgattaaacaacaagtattaggaatcaataaggcctttcaacaagtaaagtcgttgatggccattcttacagtaatagtccagactaggttgcctaaaaagtagtggacagatggtat-----agagcagcatccgccatagtacaagcctccatgtggcaaaaatggtatgcttacttacaac-------tgcaatctctac-tgtccactggggactgaattacatgctgtcctggagcctgtagaacatgggacctttaacatccctcttctagagcctccaatggaggccttcctaaaagtaaaggaagacacataccctattatttaagatgcttggtatgtggatggctctaataagaggaatcctagtcactggactgtgttagcaatacaacctcagactgataatatttgttttgagactacacctaaagaaagaagctaatgggctgaattgagggctgtctggatgatatgcgtccatgaaccttggtccattcccttctgcacagatagttggatcaactctaaggatttgataatttggatgttccag---------gatgactggagagttttacagaaaccattatggggagcagaattatggaaagatatatgtgaaaggatacag-accttattgtctcccttactgtt---gtccatgtctcagTATGTCCTTGCTCCAGGAATACTGAGGCAGACATCTTAACAAAGATCGGGGAAGTTCAGAATTGGCTGGATGGATTTATAGGCACAGTGGGTGTCATTGTGCTGAAGTGGATTGGAACATAGTGAAGGGAACTGGCATGACCCTTTGCTGTACTGCCATCTTAACATCTGTCAGTAACTGC----------CCCACCTGAAACTCAGCAAGAATCAGCATGCCACATGATGCATTCACATGTGATTcaacca-gttttagattggaaaattgataatattgaccctctacccatgaatcaaggggaaatgtatgccctaacttgtgtggacccaggctctgggctcatgtaagcccccttctgcaaaagggccaatcaaa-ggccactgtcaatgttttagaacaatttagtgtcgtgtatggatatccctgaaagatatataataatagaggaacacattttactggacctcacatgcaggactggactaatgaatgggacatacattggcaatttcatttaccctataatccac-aggctaccagactaattggaaggaagaatgatattcttaaagcTCAATTC--AGCCGCCTC------CTACAGATACTACAGTTACACAAAAAAAAATGGATTAAAAAATGTCTTCCCAGGAGCCAT-ATATTACTAAATTCCACAAAGACACAC-----TATGGCATCACTCCCTATGCGTGGTTAGGTACCAAAATCAACACACCTATAATTATTTCCATCCAGAATA------CAAGTCCTG--AGGTGCTTATT---CCTGAGCTAATAGTAGGCCAGCAACAATTATGGTTCCTCGTTCCTCAGCCCATCCTCCCAGGAGAAGGAGATAGTTGAATGGGGATTAGAATATCAACTTTCCCCTGGATAGATAGACCAAGTCTTGCCAGAGTGTGAAAAATGTTTGGGATAGCTAAAGTAATTCACATTAATTCTGCTGGGGTCTGGGCCAAAGCAGTCAGTACATATGTATTCTGGACAGGCACCCATAGCACAAGGTACTATAGTTGATTATGTAACATGGTAATTTGCACCACCTTTAATTTTACATGCACAGGTTGACTCTCTAGCTCCTGGGGAACATGTCTAATATATACCTCTCACTAATGCATCCCAGGTCA----CTTCTGTCTTTA--CAACAAAGGGTGAAGTCACTAG a score=11728 s hg19.chr6_ssto_hap7 1317713 385 + 4928567 GAAATGGTTGCAGGTGGAGGAAGCACTTTCGCCGGAGTCAGGAAAGCATGAATAACACAAAATCTTCAGCTTTTCCTCCCTTCTCTCTCCTGAGCTTTCTGCACCTCTGCTGTAGCAGTGATGGCAGCAGTGTGGAGAACACAG--CCTCAGGGAACAACCAAGGTCCAGGATCACTAGCAAAGGTTATGAGAAACTATGACTTCCTTTAGAAAAAAAAAAAAGGGAAATGAGAGTGCCCAAGGTCTTAGGAGAGGGCTGGTGCAGGCCTGGGGCGTAGTAAATTCTTTAGCTTGTCTAGATTCACCATGCCAAGTGGGGAGGTTGCTTGGGTCAGACTATATTAAAGGACAGCATC-TCCACCCTCCCCTAGAGGTCTCAGAATGTC s canFam2.chr10 32577644 361 - 72488556 GGGATGGTCACAGCTGGAGGAAGCCACCTCATGCAGGTTGGGAAGGCACCAGTCACATGGAATCCCTGGCTTTT--TTCCTTTTGTCTCCCATCCTTCCTGCACTCCTGGTCCAACAGGGAGAGCGACACTGTAGGGCTCATAGGTCTTGAGCAAACAACCGAGGTCCAGCATCACCAGCAAAGGTAATGAGGAATCAGGAATACCTTTTAGATAAAAGGAGA-------GAATGTTCCCAAAACCTTAAGAGGGGGCTG--GCTGGTCCAGGCACCAATA----------------TGACTTCACTGCACGAAGTAGGGCGGAAGCTTGAGGCAGAATATAATAAATAATAGCATTGGGCACTCTACTCCAGAAATCTCAGAATGTC a score=35563 s hg19.chr6_ssto_hap7 1329906 443 + 4928567 aagaaAGTTAACATTGATTTTGAACATTTCAAACCAATTAATACATCATTGTATTTGTGTGACAACAAATTCCATACAGAAGCTCTTACAGCACTACTTTCAGATGAAAGCAAGTCTGGATTCATCGTAATAGATGGTAGTGGTGCACTTTTTGGCACCCTCCAAGGAAACACAAGAGAAGTCCTGCAAAAACTCACTGTGGATCTCCCAAAGAAACACGGTAAAGG---TCAGTCAGCCTTGCGTTTTGCCTGTTTAAGAATGGAAAAGTGACCTAACAATGTTCAGAAAGTAGCAGAGACTGCTGTGCAGCTGTTTATTTCTGGGGACAAAGGGAAGGTGGCTGGTCTAGTTTTAGCTGGATCCGCTGACTTTAAAACTGAACTAAGTCAATCTGATACGTTTGATCAGCGGTTACAATCGAAAGTTTTAAAATTAGTTGATAg s canFam2.chr16 16107195 446 + 62570175 AAGAAAGTCAACATTGACTTTGAACCTTTTAAACCAATTAATACGTCATTGTATTTGTGTGACAACAAATTCCATACAGAGGCTCTTACAGCACTACTTTCAGATGACAGCAAGTTTGGCTTCATTGTAATAGATGGTAGTGGTGCACTTTTTGGCACACTCCAAGGAAACACAAGAGAAGTCTTGCACAAGTTCACTGTGGATCTCCCAAAGAAACATGGTAGAGGAGGTCAATCAGCCTTGCGTTTTGCTCGTTTAAGAATGGAAAAGCGACATAACTATGTTCGGAAAGTAGCTGAGACTGCTGTACAGCTGTTTATTTCTGGGGACAAAGTGAATGTGGCTGGTCTTGTTTTAGCTGGATCAGCGGACTTTAAAACTGAACTAAGTCAATCTGATATGTTTGATCAGAGGTTGCAATCAAAAGTTTTAAAATTAGTTGATAT a score=108009 s hg19.chr6_ssto_hap7 1330658 1413 + 4928567 CCTATGGTGGTGAAAATGGATTCAACCAAGCTGTTGGGCTATCTACTGAAGTCCTCTCCAAAGTGAAATTTATTCAAAAGAAGAAATTAGTAGG--GATACATTGATGAAATCAGCCAGGACACAGGCAGGTACTGTTTTGGTGTTGAAGATACACTAAAGGCTTTGGAAATGGGAGCTGTAGAAATTCTAATAGCCTATGAAAATCTGAATATAATGAGATATGTTCTTCATTGCCAAGGCACAAAAGAGGAGAAAATTCTCTA----ACTCCAGAGCAAGAAAAGGATAAATCTCATTTCACAGACAAAGAGACCAGGCAGGAACATGCGCTTATCAAGAGCATGCCCCTGTTGAAATGGTTTGCTAACAACTATAAAAAAGTCGGAGCTACATTGGAAATTGTCACATATAAATCACAAGAAGGGTCTCAGTTTGTGAAAGGATTTGGTAGAATTGGAGGTCTCTTGTGGTACCAGGTGGATTTCCAAAGAATGGAATACCAAGGAGGAGACGATGAATTTTTTTACCTTGATGACTACTAGGTAGTCGACATGGGTCCGGCAAAACATGCCTCACTCTCCAGCATCCAACCCAAGGAGCATACTCATGATGGAATCCAAACAGATCCCTGCCTTACAATTGGAACATTTCCAGAACTTAATCCATGAGCACTGGATATTGAAAAGAAAACAGAAACAAAACCAGACCCAACCCTACACTTTGGTTTGTCACGGTGTCAGCGTAGCAGCCTACAACTAAGTTCCT-AAATGCCACTTTGGACTAATTTAAAAAAGAATCCCAGTTTTTACTTTTACTCGATGGTGAAATTGGCTGCTCTTGtattttatt--taaaaaatgatttttttaaCCTTTATACAAATAAGCAAAAATACTTTAACTGCTGTAAACCTTCAAAAGTTAATAGAAGTGAGATCGTACTG----CTTTCTTATTTTGATTGGAGAGAAATTAAATTGCTACATTTTGCAGTGACCCATTTACATGGCATTCTCAGCTTAGACTGCATAAGAAGAAATATATGTGGTGAAATGTTGGAACCATTTCTCTCTTGGTCTCTGTTTAATGATGAAAGAGTGAGCTAATAGGAGGCAATTTCAACTTCACTCCCTCACGCTACCCCTTCCCCCTCCAGACTGGCCGTTTCAAGGATGAAAATTGCATTGCAAAATC-AAACTGACTCATGAAGCATTTGGGCC-AGTGCACTGTTTACTTCCATCTG-TTTGCAGACACATTTGTGCCCGGTGTTTGGGAGCTCTTTGTATCAATGTTCCGACAAGGGTCCCAATAACCTTAACCTACTCGAAACCAGTTTGGGATGGATATGATGGGGCTTCTGTGCTATTGCTGGGATTGGGAGAAATAAAACATGCAATTTAAGTGGAAGCAAAACAATTAAAA s canFam2.chr16 16107643 1388 + 62570175 CCTATGGTGGCGAAAATGGATTCAACCAAGCTATTGAGTTATCTACTGAAGTCCTTTCCAACGTGAAATTCATTCAAGAGAAGAAATTAATAGGACGATACTTTGATGAAATCAGCCAGGACACGGGCAAGTACTGTTTTGGAGTTGAAGATACACTAAAGGCTTTAGAAATGGGAGCTGTAGAGATTCTAATAGTCTATGAAAATCTGGATATAATGAGATATGTTCTTCATTGCCAAGGCACAGAAGAAGAGAAAATTCTCTATCTAACTCCAGAACAAGAGAAGGATAAATCTCATTTCACAGACAAAGAGACAGGACAAGAACATGAGCTGATTGAGAGTATGCCCCTGCTGGAGTGGTTTGCTAACAATTATAAAAAATTTGGAGCTACATTGGAAATTGTCACAGATAAGTCACAAGAAGGATCCCAGTTTGTGAAAGGATTTGGTGGAATTGGAGGTATCTTGCGGTACCGAGTAGATTTCCAGGGAATGGAATACCAAGGAGGAGATGATGAATTTTTTGACCTTGATGACTACTAGGTAGTCGACATGGGTCCGGCAAAATGTGCCTCACCCTCCAGCATCCAACCCAAGGAGCATACCCGTGGTGGAATCCAAACAGATCCCTGCCTTACAATTGGAACATTTCCAGAACTTAATCCATGAGCATTGGATATTGAAAAGAAAACCGAAACAAAACGAGACCCAACCCTACACTTTGGTTTGTCATGGTGTCAGCGCAGCAGCCTACAACTAAGTTCCTAAAATCCCACTTTGGACTAATTTAAAAAAGAATCCCAGTTTTTACTTTTACTCGATGGTGAAATTGGTTGCTCTTGTATTTTATGAAAAAAAAATGATTTTTTTAACCTTCATACATAGAATCAAAAATACTTTAACTGCTGTAAACCTTCAAAAGTTAATAGAAATGAGATCATACTGGTTTGTTTCTTATTTTGATTGGAGAAAAATTAAATTGCTGCATTTCGCAGTGACCCATTTACATGGCATTCTCAGCTTAGACTGCATAAGAAGAAATACACGCGGTGAAATGTCGGAACCGTTTCTCTCTTGG--TCTGTTTAATGTTGAAAGGGTGAGCTAATAGGAGGCAATTTCAACTTCACTCCCTCACACTACTCC-TCCCCCTCCAGACTGTCAGTTTCAAGGATGCAAACTGCATTGCAAAGTCAAAACTGACACATGAAGCATTTGGGCCAAGTGCACTGTTTGCTTCCATCTGTTTTGCAGTTGCATT--------------------------------------GACAAGGGTTCCCATAATCTTAGCCTACTAGAAACCAGTTTGGGATGGATATGATGGGGCTTCTGTGCTATTGCTGGGATTGGGAGAAATAAAACATGCAATTTAAGTGGACGCAAAGAAATTTAAA a score=364 s hg19.chr6_ssto_hap7 1332071 75 + 4928567 ATaaaataaataaatccattgcctgattccatgtctccctccaattaccgccccatttctctgacactccttata s canFam2.chr16 14797220 71 + 62570175 AGATTAAAGCAGTATTTACTGACTT-TCTCTTGACTGCCTCCATATACAATCTAGTTTCT---ACTTTTTTTATA a score=6757 s hg19.chr6_ssto_hap7 1332329 382 + 4928567 gttacatctgtgcctccaaatagtgtgtt----atagtgccgttttgtttttcactcttatgtatcatccttagtgtat-agctcc-ctttcatatacccctctcctctcaatatagttattttataattttggttagctgggtgttcactatttatattattatgaccacagaaatgctattcacagctagactaggaaatgctattcacaattagattaggaaatgctgttcacaatta-gattaggaaatgctattcacaaggattattttccttcctggaattgactttttaatttccctggaattaataaatgttttatcccttcatgtgcttaatttctgttgtactcattataaaatctcttccaaatttccctccaaggcc s canFam2.chr12 3923587 321 + 75515492 gTCATTCCTGTGCTTTTAAGTAGCCTGCTTCTCAGACTGGTTCTCTGGTCTTCAGGTTTATGGGACTTCTTCACTGAATTGGCTCTTCTttcacacactcccatcttcctcatataataacttgataattttgatgagctcagtgtgcagtgtttacattattatgaccat-gaaatgttagtcacaactgagc-------------------------------attttgtagac--ttatgattaag----------------------tttcctt--ttgagtcagtttaaaattttcccc-------ataaatattttatcccttaatttgcttagtt-ctgttgtgctccttttaaattgttccccag--ctcccactggggaa a score=42589 s hg19.chr6_ssto_hap7 1333059 1733 + 4928567 gtctccatgaatatattcaaccatgccccgtgttctaccaacctcatctttgtgaagacactt---------cccttggtcctgccacacgtggactgg-tgcatgcacatctggg------ctgatttccaagatcgtcttcacctcatcctgggcatccctctgcctctctcttatgctggctctcctattgcctggatcccatgtg-tccccttttttggttttctccatcgtttttgtttctcatttcatcc----------gtgttcct---aagggaacatggaaagtaaaatctgaaagcctaagcttctgaaaatgtcttcgggctaccctagcacttattccaacctggacttggtatggaattctgtattgaaaacatttttcctaggaattt-------ccatgacattccatcaacattttttagcttctaatgttgt------ttttcttgccttttgatgtttttgggatttcttcttttccacccaccttctaaaatttcattgtgatgtgtcttggtgtgggtctgttttcatctactatagt-aagaacttggttggggccattacaagttaaatttttgtc-tgtaaacttggagaaattttttta--------ttttaaataatttctatctttccattctttt-agaatttgtattattaagttgcaggaaatccttgactgatagcctagtattcgtatagtttttctgtctttcttgacattgtttttccatttttaatatttagtggtagtacaaatttactcttccaagtgatctattgaaatacttatttaaatgatcac-tttttgatttccaagagtgctttttggttctctg------attgtatataattttataaaatcctattcatcatttataaatgccatatcttattatttcttttaggtattaTTGAGAATAGTGGTAGTGGACCTGTTAGATCTCCTGGTTATCTGCTTTCATGGTACCATGAACTTTTCTT-CACCACACTTAGCTCAGCAGTAATTTTATATTTCTCTTTGTAAGTTCTGCTAAATGTGCATCTCCTTCATGACAGTGCAAACATCAAATTG-CCAGCATCTTACTTTTGCTCTTCACTGTA-TCTTCAGGGTCTAGTAGATCACATGATTCATCAGAGGACTTGAAATACATGCTGAATGAGGAAATATAAGTGTGGTTAG-GCAGGGAAATCAGACTTCCTTGATCAATTGCCCCTTGATGTTCTCCTGAGCACTGTATCTCATGACCTCCTGTCATAGAACATTCAGGGACATTGAAAGAGTTCACTGGCATGGGATACAGCGTCATATCCACCACCAGATGGACAGGGAATCAGTGAAAGATGATTC--------CATTAAGAGAAAATTCCCTGGGTCCACTCC-ACCCCCACCACCTGcttaacctctctgagtctccctttccctgtctatacaaagatatcacatatcgggcttctcatgggtttgcattgaagatcaaatttgactctctcagtaaaacacatggtattataccttgaggtatattaagtgttcTGCTACTCATAGCTACTATCCCTAtattgattacagcatttggattgtttcaatcattttgcttttataaaccaaaattcaagaaacatccttgaacatatattttttagaatgtgtgcagttatcttcttaggaaaaattcttgaaagagaaatatatgcattgaaatgtaagtccatttatattgttaacatgtttcgcaaaagtcccctctagaaatttataccCCAGTGTTt s canFam2.chr12 3923908 1709 + 75515492 atcttcaagaacatcttcgagcccacccactctccccctatctttatgtctgtgcagacgcctggtctgcagccctcagccttgtcccatggggacggggtgcctacacacctgaggcagcgctgacacccg-tacccccttcacctccttatgggtgcc----------tctcttgtcctggccc-cctgttgctggggtcccatgtgctccccatgtttccttttctcagtcattatt----cccactttgcctactggcagtggtgtcctgtggaaaggaccatggaaagtagaa-cagaaactataaacatctgtggag--cttcaggctgccttcaccctgattcacacggtga---agtgagagactctgtgctgggcagagttgtccttgggaattgggggcctcatgtcat---------gtctttggggccccagacctgtgatctgtgttgttgactcttggagttttcagggtgtctgctcttccacc----ttctgacttttcat---gacgt-ccctggtgtgggtctcttctcatctacttcagttaagaatttgagtaggtc--tttcaacatgtgtgtatatcctgtcaactctgagaaatattcttgaaatattgtttgcatcaattccta-ctctctattcttttTAAAAATAGTGTTAT-AACTTGTTGGAATCACTTTATTAAGAAACAA--------ACAGGTCTTCTCTGCTGAT-GTCTTCACCTTCCTGATTGTACTGCTTCAGGGAAGGACAACGTTAATTGTCCAGTGCATCAACTAAATAAttcatttctatgctcatattttcaatttcccagagctgttccttgttctatgtataccactgtgtatagttgtgt----ttttgtttTCTATTTATA-------------------TACTGCAGGTATGATTCATACTGGTGTTAGGGGATCTTCTAGGTCTCCCGGTCATCTGCTTTCATGGTATCATGGTATTTTGTCACACACCACTCATCTCAGGCACAACTT-ACATTTACCTCTGTCTATTCTGCTACATGCTCATCTTCCACATGACAGTGCCAGTGTCATATTGACCAGGGGCTCACAATTTTTCTGTGTTGTAGCCTCCAGAGTCCAGTTGATCC--TGAGCCACTGGAAGCTTTGAGATGTACACTGG-TGGATGGGTTTTAGTGTGATTTGAGCAGGAGAGTCACACT-------------GCCCCTCAATGACCTCCTAGGCTCTGAGTCCAGCAGCCTCCTATGGCAGAACATTCTGGAACATTGTAACAGTTCACTTACACAGAGTGCACGGTCGTAACCACTTCCTGATGGACAGGTAA-CAATGAATGATAAATCTTCAAGATCTCTGAGAGCAAATCTGCTGCGTTGAAACCTGGGTCTTCCACCTTCTCATTCTCTTCGAATCTCTGTTTCCATATCTATACAAAGGGATCCCCTATGTGATATTTCATGAGTCTGCTTGGATGATTAACTTTGACCCTCTGTATAAATCACATGGTCCTAATCCTTGAGACAGACtaggtgttccactatttatatatatcattatcatatttattatagcatttagatgagctctgtt-ccttgtttttataaaccacaattcaagaaacatctttgaa-atatattcttgagaatatgtgtgattatctccttaggataaactcctcaaaga-aaatgtctgtgtcacaatataagcaaatttaaattatggagatattttat-gaagcaccctttacaaattt-tatgccagttttc a score=5624 s hg19.chr6_ssto_hap7 1335079 155 + 4928567 TTTTCATCAGCCTTCATGACAGTGTATTTTCCCTAC-CTCTGGATAATATGCTTATCATTTACTTTCACATATGCCAAACTGACAGATTTTAATTTTCATTCGCATTTCTAATGTCATGTTCTCATTTTTCCTCATATTCATTAATCAGAGTATAT s canFam2.chr12 3925618 156 + 75515492 ctctcatcaacttctatgatgttgccttttcccaactctctgatggacactCTCATTCCTTACTTTCACCTTTGACAAGCTTATAGATTCTAAGTTTTATTCCTATTTCTTAGTCCACATTCTCATTTTTGTTTGTGTATCCTTATTAGCATATAt a score=14126 s hg19.chr6_ssto_hap7 1335274 487 + 4928567 ATATTATTATTTTTCTATTGGG-----ATGACTTAAAAATGTTGAATTTGACtaagaaaaaa---agcagctcttgac-----------ttctgacactgacagtaggtt-tcagtactgttagaagctgtcctactgctcaacactaggccatattattcttttcttggacataaaccatattacacaacatcagacaaggacactctgggaacatgataaaacaagacaaaacaggggcactacataatttagtataagcacagacaaaaaccaaggcactgtgtacctcacaaaataccaaacctctccccctgctggctaatatgagtgacggctgtttctttaccagccacaactttatccttgctctgctctgcatttattatgggtaagatttattgaga----cagtcgtagaaatgttcctgctttttgacaacaccccatctacagtcaacccctacctcattagct-ctccccaaaaacatccactaaaagaccaaatcct s canFam2.chr12 3926165 474 + 75515492 ATTTAATTATTTTTGAAATGGGTTATAGTTATTTTAAAATATGGAATTTAAgagagagaaaaaatagcagccttcaacatcaggaactggtctgacactgagagttggctgccagtgtgataagaagctgg-ctaatgccaactacctggccatattattctcctgtaggacataaa-cat------caacatcagacaaggaaattc-----------------------aaatcatgacactatttgtgtcattacaaaca-----aaaaaacaaggcactgtataacccacaaaataccaaacctctccctgtgtcagccaatgtgagcaatcgctgcttctttacca--cgatactttatcctcactctggtctgacctgcccagagatgagattctttgagatgttcaagcatagaattgcccacacctcctgacaacacatagttaggagtgggccccaacttcctcagatcctctccaacaacaccaatcaaaggctcatatctt a score=5369 s hg19.chr6_ssto_hap7 1335761 151 + 4928567 atattgcattttttctaatatcctcacgctaagat-----------------ggtgtgcattctctcttgtgacaatgagtaataaaccccagttgttcagctatagatgttcctggtggtctttggctgaaagacattgaAATATGCTA-CCTTTTGTCTTTCCAATT s canFam2.chr12 3926839 169 + 75515492 atcttttatatgttccaacacctccatcttaacatgtgccatagcccccaaagaggtgtgatctctttcactgcaacaagtaatagatccaacttgaatgcccacaggtgctcctggtggtctttggctgaagaacattgaAGCATGTTACCCTTTTGTCTGTCAAAGt a score=4881 s hg19.chr6_ssto_hap7 1336516 184 + 4928567 TTATAATTTTAAAATATGTCTACAAAGCCTATAAGATATTTTATATG-GCAACTTCAATAAATACTTTCTCTTGGGCTAAGTAATGACTTATATACCTCCTTGTGTTCACCAGGTTATAGAAAACAGTAACACCAAGAGTCTCAATGAAATATTGACAAGGATTAGCTCTGGTGATAAGCATTTT s canFam2.chr12 3927293 181 + 75515492 TTATGACATTTACAAGTATGTACAAGGCCTACAAGGTAACTGATAGATGTATGTCCAATATAT-CTTCTCATTGGGTTCAGCGAAGACTTATGGGCCTGCTTATGTTTTCCCAGTGAATGCAAA---TACCAACAAGACAACCAAAGCAATAGAGACATTAGTTAGCTCCAGTGATGGGCATTTT a score=8561 s hg19.chr6_ssto_hap7 1336701 264 + 4928567 GAAAATGTATGACCTTGAGTTGATAAATCATGTTTTGGTAATCTATACGTACACTCTAATTGTTAAAATACATATTGAACTTTCTTGGGCCTGCTGTATTTTAGGGATATGTCTAAGACCCACATAGCCAAATCCATGGGTTCTATGTGAAGGTAATTTTAATGTATTTCAATCTGGGAGTCACAAGGTATCTTTTTTTGTGGGGGAGATTGAAAACTAAGAGCACTCTAGATAAgcactatcaaaaatggtaactac------tagcta s canFam2.chr12 3927673 254 + 75515492 GAACACTTATGATCTTGATGTGGTACATCATGTGTTA------TGTCAGTACAATTTAACTGTTATAATGTACATTAA--TTAAATATTAATGCTATATTTTAAGGAAATGTCTCAGACCCACATAGACAAATCTATGACTTCCATATGAAGAGAAATTTAATATACAT-AATCTATATGTCACA----GTATTTTTTTGAAGAGGGTCTTGAAAACTAAGAATGTTCTAAATA--TACTATC-TGAATGATAGCTATAGATCATAGCTA a score=3124 s hg19.chr6_ssto_hap7 1337507 38 + 4928567 TGTGGGCCTCAAGTCAAGTGCATTAGACACATCTAAAA s canFam2.chr12 3933056 38 + 75515492 TGTGGGCCTCAAGTCAGATGCATTAGACACATGTAAAA a score=1635 s hg19.chr6_ssto_hap7 1337885 26 + 4928567 TGAAAGGGCCAATATTATTTCTCATA s canFam2.chr12 3933094 26 + 75515492 CGAAAAGACCAATATGATTTCTCTTA a score=11735 s hg19.chr6_ssto_hap7 1337915 487 + 4928567 TTGCAAATTCAAAGTGGGTCAGGAGTGAAATCTCTATTTTGTGCTTTTAGGCGCAAACCATTCCCAGCTCCAAAATGGAAACACATTT---GCCACCTCTGTTCCCAGACTAAGGACACTC-TCTGCATCCAATTTACAGGTGATAGGTTCTCTTCTATAAGAGCCCAGGGCAAGGCAAACTTAGCGCTAGCTAAGTTTTGGGATGCAGGGAGTCCTGCTCGGGGAGAAAAATTTGGGAAAATGAAGAGG----CAAAG--GGGCCAGTCAAGAACTCTCCACA-GCTTACCCAGAACAGGATttctcaaagtgcaatctgtggaacccttgtgggctgctgaaaccccttcatagatccacaaggttaaaa-gtatttttataatacaatgaagacattatttg----------------------tactaaagtaaaacttgacaagaagggaggctatggtaccaaactgaaatagtagttattatattcttaaccacttcttaattatagaagaaaa s canFam2.chr12 3933171 488 + 75515492 TCACAAAATCAAAGAGGGTTATTCATGG-------GTCTGGTGCCTTCAGGCACAAACTGTCCTCAATTACAACAGGAAAATCCCTGTCCCTCCACCTCTCTTCCCTCACTGAGGACCCTCGCCTGCATCACATTCCCAGATGA---GTTCTCTTCTAGATGCACTCAGGGC----TATCCTCAG----AGCTGAGTCTGCAGAGACGGGATGTGCAACTCAAGGAAACGGATTCTGCTAAGTGAGGAGGAGGCCAGGGTAGGACCAGCTGGGAGACTCCCACAGGGTTATTCAGAGcagcagttctccaagtgtgctctgtggaacacctgacgtcacctgacgtcactgt---ggtccatgaggttagaacctattttcgtaac-------agacattattggccttttcacttgttgacattctcactgaggtgaaacttagcaagaatggaggttatggctgcaaacagcaatagc-----tcttcttcttcaccactacctatttccagaaagaaa a score=20685 s hg19.chr6_ssto_hap7 1340241 828 + 4928567 CCAGGCCTTATCCTGTCTCTAGGACTGTGG-CAAGGGCTTTGTGTGACCAGGTCAGCCTAGGCTCAGGCTTAGGTCT-GGCCCTCAGCCCCCAT--------CTTGTTCATTGTTT---TGTTTTGACAGAAGACTATGCCTGTTCTTCTTCTTGTATCTGAGTTCTGGTCTC-CAAGTCTCC---AATCTCCTCTAGGACAGCCGTAGGAGTTACTTTTTCTGTCATTGTCCTCACAAGCCCTGGGGTGGCCCCTGCACACAGGAGTCTCTGTGGTATCAAGAGACCAATTTTTAGACCCACCCAGCTCTTG---TCCTTCCAGGGCTGTTTCCTGGACTATTCTTCGCATCTTTTCCCCAATCTTTTTCAGGAAATCAAATTCTGGAAT------TAGAGATCATATCTCGGTTTCTCACCTTAGATAAACTCCTGTTAGGTTTCTAACAGGAATTTATTTTTGGCTCACCTACCCTCTCTCCCTGCCTTTGGCTGTAATAATCCTAGTGCTGGCTCAAATCCAAACTCATGGATGTC------TAGACTCTAATTTAATTCACAGTTGGTTGGAAAATAGGGTCCATAAGCCTAGGATCATTTTTTTTTTTCTGAAAAGGGAACTATA-ATTGTCTGC-----TGTGGTATATGAGGATTGGTGTGGGAGGGAGGCGAGAACAGCATTTGTGAGAAAAGTACAGGCAGCATTGATGTCAACATGAGTGGTTGTTTCACtgtagctgccacaaaacagcatgtggtctgcagctacattaataaagatactgtttctagaatagggaggtgctgtacactggtcattcatttagccaatatttgttgagtgctggctgtatgaa s canFam2.chr12 71500603 794 - 75515492 CCAGACCTTGTCCTGCCTCCGGGACCATGGGCAGCAATGTTGTGTGGCAGGGTCAGCCTAGGATCGGGCCTGGGTTTGGGCTCTCAGCCCCAGCTCTTGGTGTTTATTTGCTGTTTCTGTGTGTCTGTAGAGGATCAGTCCTTTTCTCATGTTCCTGTGGGAGTTCTGGCCTCATTCATCTTCGGGGGTCTCCTGTCTGACAGCAGCAGGAGGTG-GTTGGCCGTCAGTATCTCCGCAAGGCCCAGGGCAGCCCCTGTGCACAGGCATCTGT---GTATCCAGAGGTT-ATTTTCAGACTCATTCAAGTCTTATCCTCCTTCTAGGG-------CTCGACTGTTCTTTCCATCGTTTCCCCAGTC-TTCTCAGAGGAACAGATACTGGATTGGCAGACAGGAAGCATGCTGTAATTTCTCATTTAAAATCAGTTCTTGTTGTGTTTCCA------------------------TCCCCTGCTTGCCTGTGCTCTGCCCTAGTGATCCT-GTGCTGGCTCCAATCCAAAGTCAAGG-TGTTATGAAGCAGAGTCTCCTTGGTTTCTC-TTCGGTTGGGAGATAGCTGTTGTGAGTCAAGGGTGGTTGTTTTT----TGAAAATG---CTGTACGTGGTGTGCAGGAAGGTGCTGTGAGAG---TGGGGAGGGAGGGAGGAG-GGATAGGA-TGGTGAGAGAAGTATAGA-GGCGCTGCTGGCAGCCTGATAGGTCACAGTGCTGGAGCTGCCCCAGAGCAG-ATGTGGTCTGAGGCTGCATTAGCAAAGATACTGACTCTGGAATAGGGAGATGCTCTACACCGGTCACTCCTTCA------------------CTGGTTGTGTGAA a score=1245 s hg19.chr6_ssto_hap7 1341069 75 + 4928567 atgctagttttacatctg-----------gaaactaaaaacaggcaaaaattgctggccttgaggggcacatgttttagt------gggaaa s canFam2.chr12 3992123 89 + 75515492 ACACTG--TTTGCATCTGGGCAGCTCAGTGAGACTCAGGTGAGGC-AAACCTGCTGGTCTCCTGGAGAGTATGTTCTAGTGGTCGGGGGAGA a score=25056 s hg19.chr6_ssto_hap7 1341144 1148 + 4928567 acacagactatgtac---------------tataagcagagtaaataaggaaagtgtttctgtcaaaaggtgctgaggggtgtgaggcaggtgatccagattgtgggtgtgtggggacagggaagatggctgttttactagggtggtctatg--gtctcactgggaatgtgaccttaagagaaa-------agatgaattatctatgaggacgtctggggcaggttctttccaggcaggggaacccccagtgcaaaggcaccagaacaggagcacatctgggttgtgggaggagttgagggggctcagatagctgcagcagtcattgatataaggtcagagatttggggagatcatgt----aggcttgaggatactggaagggttctgactttgctctgagtgagatgggggagacacaaacagctgtcagcagagtagagacttggcacatcttttaaaaggatcatcctggctgc-----tatgctgagaacagaattgagagatgaggggtgagtgagaa---agtgggaaaactgtaggaaactagtgcagtatttcagattagcaactctggttgctttgc--ctggggtgtgagcagagaaaagagtgggaagtgattggatttcagacacattctcaatatggacttcacagtacttcctaatagattaagtctggggtatgaaaaagaggagtcaaagaggaaccccaaaatttcagactgtgcaagtagaaaaatgaagttgttgtcagcacagatggggaaaattctgaaaggggcatatttgaggagggggcactataggcattcaatttaggaaatgttgaatctcagatgtcagacattcaagtgaggttgttgtgttggcagatggatatgcaagttggaaatgcaggagaaatgtctgggctgggaaaatagatttaggagttaatgccatattaatgatatttaaagcatagagcatgcatgagt-cgccaagggaaagatggctatagaagagaaaaaggacatggactgaaccctggacc-ttcagtgctaagggatTTCATCAGAACACACTCTGAC--AGCAGACTGCACAGTTCTAACACCACATCTAGAAAGTAAGTAAATCTGAGAAtctcaaattttagtgtgcgtaggaatcacctggacaactttctaagattcaggtggtct s canFam2.chr12 3992517 1103 + 75515492 ACATGAACtgtgtgtgtgtgtgtgtgtgtgtgtAAGCACAGTAAGTAAGGGAGGTGTAGACATTGGAAGTAGGT-AGGAGCTTGAGGAAGGTGACCCAGAGAGAACCTGCTCtaggacagggacggtggccaccttactgcagggattgggggagcctccctgagaaggtgacc-tgggagagattggaggacatgaattgtgtaggaggatgtctgggggaagttctttccaggca-gggaacctcca-tgctcaagctccagggcaggagcctgtcccatgtttgagggagggtgaggaggcccctggggctggagcagagagcaa---------ggggatgacatgacatcacgtcatggagcctgaggacagtagaagggttttgagttttctctgagtgagatgtgg-----------agttat----------aagaatgaacagatcaattcattgaatttctttaccagcacctgtttgctgcgtgcagaattgagaggtgaaggg-----gagcaactagtagggaacctgtagg-acccagggcagtgtcccaggaggggga---tgggggctgaacatctggaatgtggggagggaagataataggaaatgagtgggtgctggatatgtttacag-gtgaattttgcagcatttcctaaggcattccttctggggggtgagagggagggatcaaggagggcatccggtatttcagac--tgcaaggagaagtgtgcag-tgccttccatggagatgaaggagacactggaatcaggacatt--gggaagcagcatcacagacatccactt--aggaatgtggaatctgggctataagaaatgcagctga-----------tgtcagttggatac------------------agagatatcaagattggagaattatacttgggaagtggctccacatcaatcagtttcagagccttcagcagagatgaggacaccaagggtgtgatggccatagaagag--aaaggaacaggcccaatccctggactgctcggggcTAAGCAAGCTGATCAGAGCGTACCCCCACAGAGCGTACTGCTCTG-TCTGGTTCTGCATCTAGTAGGTGCATAGAACAGAGAGGCCCAGCCTTCAGTGAGCACAGGGATTTCCTGGAC----TGTGCAgatctagagaggct a score=9164 s hg19.chr6_ssto_hap7 1342292 292 + 4928567 ggagttgagaatgagattctgtgtttataaaaaagttgaggcagac-actgatggtcttcagatcacacttttagtagcaagAATGTAGACCAGGATTCCCAGGTGGCTgtgcatcagcctcacctgt--ggcttgtta---------ttcctgggatccatgttccac-ttctgagatggtgggtatggggaaaggcctgagtatttttgtaaaaaatctacaaggaatcctggtgatcagccagattg-------ggaaccacTGAGGTCAGTGATCAACAGTGCCTAGGGTGGGAAAGGGTCTTAAGTC s canFam2.chr12 71501468 309 - 75515492 GGAAGTATGGGTGAAGTTCTGTGTTTTTCACGAGGT---GCTACTCTGCTGCAGGTCTTCACATCATACTTTTAACAGCAGGAATGTACATTAAGATTCCCATGTGGCTgtgcatcagccttacctgtagggcttattaaacaggcaattccttgatcttgtgcctaatattctgagtctctgagtctggggagaggcctgtgcattttgtgagaagctgcatgagtgatcctagtgcttgatccTAGTGCTCAGCGGGAACCACTGCGATCCGTGATCAGAGCAAGCCTGGGTGGGGAGGGCATTCAAGTT a score=17328 s hg19.chr6_ssto_hap7 1342584 973 + 4928567 CACATTTAAATGCT-------------------------------------------------------ATTTTTTctaatttaaaca-----taaaggacttctatctgtctatctatctatcatctatcttcattaggctggtgtttattttattttgggaaggtctgtgagaataggcttaaagctacatagctagaagcagcatctataatcccatcctaggtggagtctcacataggaatcactgcccctgatgctgggcacagatgtcactgttcataccaatgacactctaaagctaga-cactggaccttgcagatagaactgctatcacgactgctcctggcaactgga-----cattgc--tgctgcaactcacacc-acacttactaaaatgtgtgcacagtaccagcttat----gtcaccaggc--tgagtcagaatccagcaagtggttatctgcctggtggaacctaagcctcatcccatatccagctgccagaatatttggaaaa-gtgagtttttCTTTCGTGGAAGAAGTTGGTGTCTGCTTCCTACAATGACTCTTTAAGTATGAAATTCTTTAAGTATGAAATCATACTCTTTAAGTATGAAATTCTCCCTA-ACATGGAGAGGGTTCAGGTGCTGGGACACAGGAAGATAGAGTGGAAAAAGAATGAAAAAAAAAGTCAATTCCTAGAGCAGTAATCTGAGACTAGAACCTTATCTGGTATA--TCATAGACACTTGGGTTTTGCTGAATGAATCAGTGACTAATTAATTACAACTTTCAATTTATTTCCTTGATAGTCTGTTATGAAGTACAACTTTTTCCTGATCA---GTTTATACTCAGATAAGTAGAGTGGCACTGTGGGATGGTGAAATGATTGCTCAAAACTTATCT--CTTG--TTAGGATTTTT----------TAAAATCTAGATGTCTAAGACTTCAGAGGACCTGTGTATACACTAAGATTTTATACTAATATTTATATTTCTTTGTATATGCACATATTTT-CTGGAAAGAATATCTGTGACATTTAT--GTTTTTGT s canFam2.chr12 71501926 972 - 75515492 CATCTCTGAATGCTTGTTCTCTGCAACTATTCCTCTGATTGATTTCTTGGAGCAAAGAATGGAATCCAACTTTTCTTGAACTTAGACAAAGGATAGGGGATACATACATACTTATCTAT--GTCTTCTATGTATATAAA----------ATATTGTTTGGGGGAAAATCAT-ACCAcaggcttag-gctacacagccaggaacagaatccacaattgcacagtaaaccaggtctcacacaggaaccatggcttctgctgctgggcacagttgtcactgctcacaccactgactcagttaatccagaacactggcccccttggctgggactgccatagctgctgcttgtgg-gactggatgacacactgccatcctgccacctatgcccatgccttct---------gcatagtggcagcttctctctgtccccaggtcgtgagtcaggg-ccagcgtgttgtcacctgtttggtgga------gtctcatgctgtgtgtaactagaaggatgttgggaaaatAGGACTTCCTCCTCTGTGGAGAGAGGCGGTCTCTTCT------AAAGACCCT---------------------------------------AAATTTGGAATTCTCCTCATGTAGGAAGGCAGTTGGGGTG-----------------AGGGATGGAGAGGGATGGAGAAAG----CCATTCTTGGAGCACAGATCTGAGGCTGAAACTTGATCTGGTGTGCTTTGTAGGCACT--GGTTTGACCGAAGGAACAAGTGTCTAATAAATGACACCTGTCTTCTAATTCCCTTGGTACTACATGATTAGATCCAGCTTTTGTCCACTCCAGTGTTCGCTCACAGATACATGCAATGGTGTTGTGGGCTGGTGGCATGATGACTTAGGATGTGTTTGCCCTGCCTTTGGCTCCTTGCAAAGAGGAGAACACCCAGGTCTGTACGACTTCAATGGGTCTGTGTGGGTACCAATGTGTCATGCTGACGTTTATATTTCCTTGTGCCTGGCGACATCCTGGGGGAGAGAATCTCT-TAACATCTATCAGCTTTTAT a score=115 s hg19.chr6_ssto_hap7 1343557 6 + 4928567 AACCCt s canFam2.chr21 9368288 6 + 54024781 GGCCCA a score=3290 s hg19.chr6_ssto_hap7 1344702 80 + 4928567 AAAGTCTAAAAAATTATCCTAGGTTTGTCACCATGCTACTCAAACTCTGATCTATGAATA---GCTGATATCAAAccatttct s canFam2.chr21 9368297 83 + 54024781 AAAGTCTAAAAAACCGTCCTAATTTAGAGACTGTACTACTCAATCTCTGGTCCATGAAGATCCACTGACATAATAAAAATTCT a score=13756 s hg19.chr6_ssto_hap7 1351984 618 + 4928567 aactCAGTACTCTATCAGAACTAAGTCACAGGGTGCTTGAGGGCTCAGAAGC------TTTTGTCCAGCAGACAAGAAGGAACTGTTATTACACAGCCTTTGACC-----CTCTAGGGACTCCAGCAACCTCGTACTGAAAGGAGACTCCTTGTC-TCCTTCTCTGGGGACCCTTTTGTTCAGA----AATAAAACTTTCGTGCTGC-AGGTGCCTTGAGGAGACGACATGTGGGTGATCTTTTCTAGAAGGCAGTGGAGTGAAAGTTTTGGGAAAAGTGACAGAAAGAGAAACAAATCCTGTACTGGAAGCTCACTGAAAACCAACTAAGTAAACAAA--TATTTTAGTACCTCAACTGAAATATAAGCATAAACAGAGGTTGACTATGATTGTACCTGGACAAGATGAGTAAAAAGCTAAAGTGGTCTGTTATCAGCTATTTATGTATTTTGGG-----------------------CCTGTCTCCAGCAGTTAACAAATGTCCT--ttctttcaacaaatatctattaagaggctaacatgtgccagactctACAGAACAGGCTTACAGGCATAATGCCACAAAGGAACAGAAATCTAACAGGCTTCAAGATCAGGCCTGTCAAATAAATGTACCACA--------------------------ATTTATATATCATACATATAT s canFam2.chr35 29297797 618 + 29542582 AGCTCTGAACTCTACTGGGG---GATGCCAGCGTGCCCCAGGGCTGACAAACCCGAACTCTCACTCAGCAGAGAACAGAGAAGCACTACTA---ACTCCTTACCCAGTGTCTCTGAGGATTTCAGC---------------------TCCCTGTCCTCCTCCTTGGGGAACCCTTTCATCCAGACTTCAGTGAAACTATTATGTGGCCAGGTGCCTTGAGAAGAAGGCATG-GGGTGCCCTTGTCTGGAAGACACCAGAG--AAAGTTCTATTAAGGG-AATAAATAAAATTATGAAT--TTTATTGGAGGGTGTTAAAAGAACAAATAAGTAAATAAAGATATGTTAGTATCTCAACTGAAATATAA---CAAAGAGAGCTTGACTATGTTTGTGCATGGACAGGATAG-----------AAGCAGTATATTATCAGCTGTTTTTGTATTTTAGGGCAGGTTCTCTTGGACACACAGCTCTGCTTCTAGCAGGCAACAAATGTCCTCTTTCCTTCAACAAATATTTG-----------------AACGGACCCTACAG-----GCTTGTGGGTATGG-ACTACAGTGCAATGAAAATCTAAGCAGCTCCAGGACTAGGCTCGTCACAGGAAGGTACCGTGCTTAGATGCCCTGGGCAAACTCTTGCACTTGTGCACCAGAAACATGT a score=12108 s hg19.chr6_ssto_hap7 1352743 633 + 4928567 catggaaatgaactaca-gtgtcacacatcaacatggatgaatccaaaaataataatgagcaaaagtagtcagtcatatacagtataattctatttatataaaggctataaataagcaactg--------------ttagggatacaca----gacagtaaaatctataaaagctaggtgacagttatacaaaattcaggatagtggttgcctctggctgcaggggagagagatatgaatgagagcatacgaggctcctgggatgtagta-atgttccatttctcagtctgagcaacgggcacctggacatttattattgttcttctaaatataca------ttttcatttgtgtattgtatattctatttcacattaaaaaGAAAAAA--------GACCAAAAAAAAAACATTAAGTGTGACTCAAGATTTAAGCAGA-------------------CACAGTGCA---AAGAAATGAAAAGGTGGATATAATTTGAGGTAGATGATGGATGCAGGTTTGGACAAACTGAGTTCCTGAAACATAGACTTTTATTCTTAGCCGTATTAGGTGTGAAATTGCCCTGAGAGCACCAGTTGCTTTTATGCTAGATTTGGAGGGGAAAGAGGGCAGTTGAACTCAGCAATTTATGTGTCCAGCACTGAAAACCTTCATGGTAAACAATTACT s canFam2.chr35 29298594 637 + 29542582 aaagaaaatgatctatatgggttgcagctcaacatgg-tgaattaaaaaatattgagtagaggagat--taagttatatgcagtctgttttcatgtccataaat-ccataaatcggcagttgcacaactatgtcacttagggatgcatacatcaatggcaagtgctacagaa---agatgatgatccgcacatggtcaggacagtgac-------gcctggagggatgaggaaCAGGAC-------------GGTTCGCAGGGGTGAGTACATGGCCTTTAGCTCAGCCAG-GTAGCGGG-ACCCATACAA--GTTACTATTCTTCCAACTGTACACAGACATTTTCATTTGTATGTT--------CATTTCACATTGAAGAGAAAAAAATAATACAGGAGCAAAGGAAAGCATTGAGTGAGTCACAATCTCAAGGCTGGGGGTGGTTACAGCATTGCTCACACTCCATGCAGGGGATGGAAGGCTAGTTGTTGGC-AAGGGAGATGATGGAATCAGGTTGGGCCAAACTAAGCCCTT---CTTCAGACTTTTATTCTTAGCCACATGAGCT-TGACACTGCCTTGCCATCACCAGTTGCGTTTATGCTAGATTTGGA---GAAATGGGGCTGCTGACCTCACCA----ATGTGTCCAGC-CTGAAAATCCTTGCAGGAAACATCGGCt a score=5187 s hg19.chr6_ssto_hap7 1353381 160 + 4928567 GTTATATGTTAGGTTACTTTTCAGTCCCACTCAGCTCAAAGGGCTTGTCATTACCCTACTGATTTGCACTTCTAAGTCTTCTGCCTGTTGCATTCTGATGATCCATTTCTATGCAAAACATAGAATCTAAAGCTGAGACATAGCAATAGAGGACCAGAGA s canFam2.chr35 29299332 159 + 29542582 GTTATGTATGAGGCTGCTCTTTGGTCCCAGTCAACTCAAAGGG-GTACCGCTACCCCATCGACCTGGGTTTCCAGGCCTCCTGCCCCTCATGCTCTGACAACACACATGGTTACAGGGCAGGGGATCCACCCCTAGGACATGGAGGTGGGAGGCCAGGGA a score=9540 s hg19.chr6_ssto_hap7 1354099 764 + 4928567 GCATCAGAATTATCACAACTTAAGCATAATATTCCTGAGGGCATCTATTTCCATTTATTTGCTTCTCTGCTTACCAACTCTGAACCCCTGCTTTCCCAACTTTCTGGTATCTGGGAAGAAAATAAACTGACTAGAAAAC--ACAAATTTCATTCTGCTTGACAACTGTAATTCTCACTAAATTTATAAATTTGCTTTCTGATTTATCAATGAGTGCCAAAAACATGAGTTTGAGAAAGGCTGAGTTTGATTATCCCTGAGTGGATCCAAGCATTAGGAAGGTCTTGCTTAAGTGGGTGATAGGAAGTGACAAAAAAAGCTGGAAGAAACATGA-CAGACTATAATACTCCCTTCCCTAACCTTCCTCCTTTTCAccctgctcacctgggccaggttagaatccgtcctttgtaaagcaccctg--------tacctttc----tattgtaacctttatttactacattatctgtttatag------agtgatctatgccattagttgaaaattattcaagggcagagacttctctttattcaccttcagtaactaacataatgcctagcatgtaggaggctctcaaAATTAAGTTTCTCATTCAAATAAATTGTACAGAGCAAGTTACACTTTTAGGGGCTGGCTAGTAGTTATCTGATGAAGGTATGATATTAAAGACCATATACTAAACTATAGCAATCTCATCAAAATAACCTTGGAGGGCTGGGAACAGGGAGAATAAGAGAAGTAGATTAGAACAATTCTTTATTCACCACCATTGCCCA s canFam2.chr35 29299640 643 + 29542582 GCCTCAGGACCAGCACAGCTTGAG------------GAGGGGTCTCATTTCCCTTC--CTGATGCTCCACTCACCGACTCTCAAGCCC-ACCTTCCTTGCGTGTTGGTGTCTGGAGAGACAATGTACTGAAAGTGAAACCAATACATTTCATTCTGCTTGGTGATTACAACTCTCACTCAATGCAGGAATTTGTTTCCTGAGTTAT-------------------GAGTGTGGG--------------------------------------TTGGAAAGATGTTGTTTCCATGGGCGACAGAAAGTGACACATGGAGCTGGAACCAACCTGAGCAGTC---ACTACTTACTGAGACAACAGCCCTTCTT--------GCTCAGCGGGGCCTGGTGGGGCATCCCTCCCCGCACATCACCTAGGCGGTCACTACCCTCCGGCTCAGTGGGACCTGG---TAGGGCGTCACCCTTGCATAGCACCTGAGTG------GCCACCACATGTATGCTACCCAAGGGCAGGGACCTCATACTGGCCAC-----------------ATGGC--GCACACAGGACACTCTCAGG-TGCAGTTGCTCAC----ACAAACTGTGGGTTGCAGCATATGCTG--AGGGCCTGGTCAGTAGTTCCCC-ATAAAGCTGTGACA---------ATAGGCGGACCTACAGAGATCTCA-CGTGATAGC-TTCCAGGGCTGGGAGTAGGGGGAGTGG-----------TGGAGCA-TCCCTTGCTCAGCATCACTGACCA a score=45460 s hg19.chr6_ssto_hap7 1354979 1193 + 4928567 gatgaggacactgaacactagaaaggatatgcaacttgAACAAATGCAAGTCAACTAAAAAA-GTTAAGCTAATTTTCAAGTGCAGAACTATCTATCT-GTATCTGATACAAATGGGAATATTCACTGAACCCTGGAG------AGAACGAGCATTTGAAAAAAAAAAGGGTTCACTTAAGAGATATGATTTTATCATAACAGCATTGAAACTTTA---ATCTCTTATTTTTCCTATTTGACTTCTTAAAAAGGGTGGCATTGCCAAGAATTTTCTTTGATATGGTTTCACAATTGTATTCACCTTCTCTCCATTCTGAGACTTATCCATAAGAATACTCACTTTAATCCGACTTCTACTGCATGGTTGGAAAAGAAGATACGCAATAACTCTTTCAAACTCCTTTATCTCTTTT---ACTCTCTCATGCTTCTCATATGTAAGTAGCTGGCTCTGGCTTCTTCTCAAGATTCTCTCCTTGAGTCTTTGTTCTGCAAGTTCTCTCCCTCGAATCATGCGTTCCTGGTGATCCTTAGTCTGCATCTGTTCCCTCTCATTTACCTGCTTTCTTCTCTGTGCGTTCTGGATGCCATGCCCTTCTGGCATAATTTTTGGTAATTTTGTTTCATTGGGGGGTTGTAGTACTTGTCTAAATGGTTTGTTCTTAAATTCTCCAGCCTTTCCTGTTTGATGTATGTGCCTTTCTATGTGTTTCATCTCTCTCTCAGGTACCAAACAGTACTGTTTTAGTCCTTCTACGCTCTGGGTTGTTTTCTCCTCCATTTTTTTCTAGATTTCATTGCCTGTCTCTT---CTTTCATCATTTCCACTATTATTTTATTATAATAAGACTCTGCTTTGGCAAGCCAGTAGTCAAGAGAAACAGCTTGCTCCCTACAGAGTATTTCACACTCCTCCTGATATTTCTGCATTATCAACTGTCTTGCTGCTGTTGTATGCACACCACCTAGATTCTGTCAAAGTGAAGTC-AGAAATTTATAATGTGATCATCTTTTTCCTTTGAACACATTTAAACAGGAGCCAAGCCCACCCTCCCTAATGACACCAGGAAAAGCTACATGCTCTTTACTTTAGCTTAGTTGTTA-TTTTATTCCCATCACTCCCAGGTGAGCCTGGGAGCTCTGAAAGTATTAAGTACTCACCACCACAAATCAGTAACTAGGTTTAAAAATGTATGGTGTTGGAAGT s canFam2.chr35 29300283 1098 + 29542582 GGTGGGGACCCTGGACGTCA---AGACTCCGCACC---AGCAAACACTAGGTAAGTAAAACCCACTCTGCCCAGCTTCACATCCAGAACTGGTGCTCCAGAATCAGATACAAAC------ATCCA-TGAACTCTGGGAGAGACAAGAAGGAGTACTGCAAACAAAA----GTTCACTTAAGACACGTGATTTTATTACAAACGCACTGAAACTTTACTAGTCTTTTATTTTTCCTATTTGGCTTCGCAGAAAGGGCGGCATCGTTAAGAATTTTCTTTGATGTGGTTTTATAATGGTAATGGCTTCCTCTCTATTCT------TTTCCATGAGAATGTTCACTTTAATCCGACTCTGACTGCATGGTTGGAAGAGAGGGTATACGGTAACACTTTCAAACTCTTTGGTTTCTTTCTCGGCTCTTGCACACCGGTCACGTGTGGGCCTCTGGCTCCGGCCTTGTCTCAGGACTCCTTCCTGGAGCCTCTGCTCCAGGACCTCTCTTCCCTGGAGCATGCGCTGCTGGTGATCTTTGATCTGTATCTGCTCCCGCTCGCTTACCTGCTTCCTCCTCTGTGTGCCCAGGACACCACGCTCTTCTGGCAGGATCCTCGGGAACTTTGTTTCACTAGG---CCGTGGTAGGTGCCGGCCTGCTTTGTTCTTGAGCTCTCTGACCTGCCCCACGCGGTGTATGTGCCTCTCTATGTGCTTCAACTCCCGGTCAGGAACCAAGTAATACCGCTTCAGTTTCTCTAGGTTTTGGGTCATCCTTCCCTCCAATTTCTT------TTCATGGCCTGTGTCTTGTTCTTTCATCATATCCACTATCCTCTTATTGTAATAGGACTCTGCCTTGGCAAGCCAGTAGTCGAGAGACAGAGCCTGCTCCCTGCACAGTGCTTCGTATTCCTCCTGGTACTTCTGGGTTATCAGCTGCCGTGCTGCCGTGCTATGCACACCACCTAGGTTCTGTCAAAGTGGGGCAGAGAATTTTATAATG----------CTTTCTTGG--------------------------------CATAATCAC-------------------------------------TGTGATTTTTACTCCCATCAATCCTATGTGAAACTGTGAGCTCTCAGAGC-TGAATTACTGGTCACCA-AAATCAACCACTAGTTTT-AAAATATGTAGTGTTGGGCAT a score=53648 s hg19.chr6_ssto_hap7 1356172 1849 + 4928567 TTCCAAAAATGATACTTTGTTTTGCAACTGTGGATATAGCTGGGTAACATTTGCCAGTGTAGACATACTACCT--GAATGTGTCACTTGGGCAGAAGGATTTTAAACCTAAGATTCCTTCTCTGTGTAGTTCCAAACTGTATGATGTGAAGATAATTTACTTACCAAGATCTTTTTTTCCAGTGGAGACTGCTGACCTGCAGCAATCCTAGGATCTTTAGATGATGTACCCCAGGCCAATCTGGAAGATAAAAAAGGCAAGGTAGATTCAAATGTAGGAGGTGTCAGAACA---------AATCTG--CTAATAGGGAGGACT-ACAGCAGGGCCATTTCCCCCATGGGAAACCACTGCATTCCTATGGTAGAAAATAATGAATGCTCTTTTAATAAGAGGATCTTTCCTTTCATATGA---ACAAGCATACTTTTCCTGTGGACTCAGCGTGAACCACTGTGAATCTCGTATTGGGGATTGTGAGTGGGAAGAGACAT-----GCTCCTTGGTGAGGTGTTGTCCAAGTACATCTATGTCAGTCTGCTCAGTCCTCAAGCCTCCTTTGTGTTCTGAGACGATTGTAGGTTCTAGTTTTCTAGACGATTCTAGGTTTC-TAGTT--TTCTCTTCCTGCAGTTTCTTGATCCGGGCCCTCTCTGACTCTATCAGCACATACAGCATTTCTGCCCTCTAATCTTTTGTTCTGAAATTCTGTTATTTGACTGCTCAGCC---CTCTGCTTGCCTGACTAACAATGCCAATCATCCTTCACTCTAAATCCATTATGAGACTATTCCCTGTTGAACCCCTCAGGATGGCA---ATTTGTGGTTACTCTGGGTTTATTTATAGAGGAGGCTGATGGCAACACAAATGAAAACTATCA-TCTTTTATGTGTCATCCCTGGTCTAGCCTGAGTTTACTGTGATGTCGTATTTAAGCCACTGAGGATGCCTGGCATTTCCTCTGTATGTCTTTTATACCATTTAGAGTTCaaaggatggtctttacagtctgacagagctagatctgaaatctaattctaccacttcctaggtgtgtgactcagggcaagtaac-ttctgtcagctttctcatctataaaatggagatgtaagacaaaaatctgcctctcagggttataaagaacaaatatgaattagatgtaaagagcttg-----------gtaAGTTCTCAATAAATTCTATCTATCTGTCCTTCACAGGTCAAGCTCCTG--ATTATAAAGTCTTTCCAGTCTACTCTGT----CAGTGATCTTCCCTTCCTCTAAATACTTGACATATTTTAA-----TTCTACAACTCATTTGAAAATTAATCGTGGTTTACACTGTGATATCTGTATTCACATATCACTTTTAACATTTTGATGCTGAAATTTAGGCT-CATAAGGAATGAAAACTGTAATTTATATCTACAAATATGATGCCTCTATATTGTTGGAAAGGATCTGATATCAAATATTTGGTCTCACTGACCTCTTAGGAACATTCTTATTTGTCTACGTAAGCTTATTTTGAGATTGTAAACGTATGATCATCTTACTTTTACTTCTCTGTACATGGCTTCTAGCACAATACTTAACATTAGAGTCTGTGATCC-CAA--GTTCTCAAAATTAATGATTTGCTGATTGCTGATGATCCTTGACACATAATATCTGAGCATCTTTTTTAAATA--TCTGCCATAACATTGTATCTATTTTTATTAAGCCATTTCCCAGTCTTCCTTGAAGTTTACAGATATGTTTGCTTTATATGCATGTTCTGGGCTCTCACATTTTGTACCTACTAGCACAGTTTTATTATATTCTAATTATTCATTCATgttccttgaggtcagagaacacagatttcaactttgcaggctcagcctca s canFam2.chr35 29301579 1753 + 29542582 TTTTGAACAGAATAC--TGTTTTGCAGGTATGGATATAG-------------------GTAAACATACCCACCAGGGAGGGGTCACCTGCAC---AGGGTTTTAAACCCAAGGCTACTTCTCCTAGCAGTTCCCAAGTGCACAACATGAAGATGAT----TTACCAGGAGTTTTTTCTCCAGTGGGGACTGTTGGTCTACGGCAATCCTAGGGTCTGGTGATGCTTTAGCCCAGGCCAAACTGTAAGATAAGAGAGCAGAGGTAGATTAGAGCGTGGGAGGCGTCAGGACATCTTCCCACACACTGACCTAACCAAACTGACTGACAAGAAGTCTGCCTCCTCCATGGGAAAGCACCGCACTACCACGGTGGAGAATCTGGGACCAGCACGTAA------------ACCCTTCACAGAAAGTAGAAGCGCACATCTCCCGAGGACTCAATGTGAACCAGTCTGAGTCCCGAGTCTGGGGCCGGGA--------AGACATAGGCGGCTCCTTGCTACTGTGCTGCCCCAGCACCTCTCCATCAGACCGCTCTGCCTCCCAGGCTC---TGTCTTCGGAGA--------------GGTTTCCT----GACTCCAGGGTTCGCAGTCCATCCTCCTTCTGTAGTTTCTGGGTCCGGACCCTCTCTGCCTCTATCAGCACATATAGCATCTCTGCCTTCCAGCCTTCCGTTCTGAAATTCTCTT-CTTATCTGGTCACCCTGACTCTGTGTCCCTGCCTTACACTGCCAGTCATCCTTCATCCCAAATCC---ATGAGACCATTCCC-ATTGAGTCCCCTGGCTTGGCACTGGTTAGTGGTCCCTC----TTCTCTTGTGGGTCAGGCTGACGGCAACACAAGTGAAGACTGCCAGCCTTTCATATGTCATCCCTAGTGTACTGTGAGTTTACCGTGAGGTCGTGTTGAAGCCCCTGGGGATGCCTGGCATTTCATCTCTGTGCCCTTCAGGCTCTTTAtgg-caagagcgtgggctttgaagcctgacagggct--gtctgaacgctaatcacaccacctctgag--gtgtggctctgggtaagtaacaatgggtcagtctcctggtctataagatggatgtgggagacaaaggtctgcttctcaatcttataaaaaacaaacataaactagat-taaagagcctgggacagacagtgtaagtcctcaataattggcaATGGTCTCTCCTCCACAGATCAAGCCCAAGTCTCTGTAAAGTCTTTCCGGACTATTCTACGTAACAGTGATTTTCCCTTCTTCTGAACAC--AACGTTTTTTAAACATTATTCCTAAGTCACTTGAAAACCAGCCAGGGTTTCCATGGTGATACCTG--------TATCATTTGTAACACTTTCATGCTGAAATTTAGACTGTAAACGGGAGGTAATCTATAATTTAGATTGACAAATACGATGTGTCTCTGTTACTGGAATGAGCCTGGTATCAGTTATTGGATCTCACTGACTTCCTGCCTATGTTCCTATCTGTCCGTGGACACCTATTCTGATATTTAACAAAGGTAACCGTCCTA---TTACTTTTCAGAACACAAC--CCAGCAC---------------GGTTTGTGTTCAGCAACGGTTTTTAGAACTC---ATCTTCTGGTT--------CCCTTGTCGC-TGGTATTTGAGCACCTTTCTCCTTTGCTCCTGAGGTGCCA-TGTCCACGTTTTTACTGAAACATCAGCGAGTCCTCCTGGAGG--TGCAGACACCATAGTCCTAGGC-CCTGTGTGGGTCTCTCG--------------TGGCG-GGTTCCACCGTGTCC----------TTTGTACCCCTTGAGGTCACAGCATCC--TTTCCAACGGTGCCGCCCCAGCTCCA a score=4850 s hg19.chr6_ssto_hap7 1358538 133 + 4928567 AAGCTGCCCCTTCAGGGAAAGTTTCTACTT-----GGAATATAAGTTACAGATTAATGAAAATAGAAAGATTTCCCAAAGATACTTATTCTCATGTTTTATAAAAGATCAGGGAAATGTCAGCTGTCCACTTAACGGA s canFam2.chr32 9838069 138 + 41731424 AAGCTGCATTTACATAACAAGTATTTATTTTTTTAGCTATTTGTGTTACAGAACAATAAAAGTGGAAAACTTTTCTAAAGGTATTTTTATTCACATTTTACAGAAGACTGAGAAAATGTCAGTTATCCCCATAAAAGA a score=26057 s hg19.chr6_ssto_hap7 1359750 1014 + 4928567 GTCATGGACCTCGCCAATACTTGCTCCAGCTTTCAGTCGGACCTGGATTTCTGTTCAGATTGCGGCTCGGTCCTGCCTCTGCCCGGGGCTCAGGATACGGTCACCTGTATTCGCTGTGGCTTCAACATCAACGTTCGGGGTGAGAGGCTTGTACGCAGGGGTCCTGGCGGAGGGCGCAGGGTCGGAAGCTTGGGGAACTCAAGATCGGTTGGGTTGAGGAGGGGATCCTAGAGCAGGACATCAGGCGGTTGTACATTTGGTCTAGCGATGAAAACTGAGGGAAAGGATGTAGGGCCTCCTGGCCTAACCAGCCAGGGGAAAGGGGAGGTTTCCGGTGTCAGCTCTCTCTGGTTGTCTCCATAACCAGTTCTTACTTGCCTGTGCAGACTTTGAGGGGAAGGTTGTGAAGACTTCGGTTGTGTTCCACCAACTGGGGACAGCCATGCCTATGTCGGTGGAGGAAGGGCCTGAGTGCCAGGGACCTGTGGTAAGCTAATGAGATCAAGAACTGGCTCCATAAGGTGGGTAGGAAAGAAATGGAGGAGTGATTGC--------------------------------------------------------------------------------------------AAAGCTCTGGAGAGTTTTGTGCCCAATTCCAAGAGGGAAAAGAGATGTAAACCATCGACGTTTGAGAG-GCGTGATCGCCTGATTCCTGTGGGAAGTAAGGGGATATGACCAGGCCT-CCCTAACCCACCAGTTTCTTC-----CCAGGTTGACAGGCGCTGCCCTCGATGTGGTCATGAAGGAATGGCATACCACACCAGACAGATGCGTTCAGCCGATGAAGGGCAAACTGTCTTCTACACCTGTACCAACTGCAAGTGGGTATTCTTTC---CCCTCCCTCTGCTCAGTCTGTTTGCTAACTAAACAAATCCAGTGATTTATTTTTTTGTAC----GAAATGGCCGTTTCCCTTGGTCCCATCCCTTATTTCTGTGCAGTTCTGGTAATAGGGAGATTTGTAGTTGTTTTTTATTTTTTT-----AAGTTACACTTTT-TTAAACCTTTTTATAACCAGTGAAATAAACCTTTTAGGAt s canFam2.chr35 29304433 944 + 29542582 GCCATGGACCCCGCGCCCTCCGGCTCCAGATTCCAGTCGGACCTGGACTTCTGTCCGGACTGCGGCTCCGTCCTGCCCCTGCCCGGGGCCCAGGACGCGGTCACCTGTGTGCGCTGTGGCTTCGGCGTCCCCGTGCGGGGTGAG-------------------------GAGGGGGCGGG-----------------------AGCGGCCGGGTTGCGGGGGG-------------------------------------------------------------------------------------CGGCGGGGGG----------------------------TCCGGGGGTGCCCGCAGCCAGCGCTTACCG--CTCCGCAGACTTCGAGGGGAAGGTGGTGAGGACCCGCATCGTGTTCAACCAGGTGGGGACGGCGGTGCCCGCGCCGGTGCAGGAGGAGCCGGAGCTCCAGGGACCCGTGGTGAGTGAGTGA-CCCCAGCACTGAC-CCACAAGGAAGGCGGGGA-GACATGCAGGGTTGAGTGCTGAGTCTGGGGTAACGGGTGTGCAGGAGGAGCCCGACCTCCAGCGACCCGTGGTGAGTGAGTGATGCCAACACTGATCCACAGGGAGAGCGGGAAGGGCTGCAGGGTTGAGTGCTGAGGTCTGGGGAAACAGAGGTCTTTGGAGCAGGGGTGCTGGGGAGAGCATG-CAACGAGATTCCTGTAGGAAGCA-GGGGTCAT--CCTGGCTTTCCCTGACCCCCCCCCCCCTTTGGTTGCCAGGTTGACAGGCGCTGCTCCCGATGTGGTCACGAGGGAATGGCCTACCACACCAGACAGATGCGCTCAGCTGACGAGGGGCAGACCGTCTTCTACACCTGCACCAGCTGCAGGTGTGCCCCCTCCCTGGCCCTCTGCCCTCTCCCTCTGGCCCTTAACCACACATGTCCTGTGACTT-CCCTCTTGTACCCAAGAACCGGTTATTTCCTTTGGTCCTGTCCTCT-----------TTTCAGGTAACAGGGACATTTGTGTTTTTTTTTTTTTTATTTTTGAAAAAGAACATTTTTGTTAGTTTTTTTTATAGCCAGTGAAGCGAAGCTTTTAAGCT a score=2635 s hg19.chr6_ssto_hap7 1361100 209 + 4928567 TTTAAAAGGAAATGAAGAAAAAAAAAACAACATAAGAAGCAGGTATTGTTTAGTGGTCAGCATCTT--ATACTGCAGTCTTCAACCGCAGTCAAGGTAGCTTTCTTTGGAGAGAATTAGTCACACATGACTTAGAGAACATGGGCtttctgaatgcttttaagacctcatttttgtctttggtgttctgca--gtcactatagtatatcaaaa s canFam2.chr35 29305377 185 + 29542582 GTTGAAAGG-AATGAGAACAGAGAGA----------AGGCAGGTATTTCTGGGTGCTCTGCGTGTTGAATCCTGCTGCTT--------GTTCCAGTGCTCTTGCTTTTATGAGAA----TCACCTGTGATTTCAGGAACCAGAGAGACCTGAAC-CATTTGAGAACTC---CTTGTCTTCGGTGTTCTGTACTTTCACCAC-GCTTATCAAGA a score=24562 s hg19.chr6_ssto_hap7 1362748 513 + 4928567 TTGGAAGTTTGTTTAGGGGAGCCAGTCCTCAATGATGTCATAAATAAAAGTCCTTCCTTGATTATTTGATTGCATATCTTATCTTATACTACTAGAAACTCATCTTTTGGTGAATATAACAAGTCCTTTCTTTCCTCATAGGTTCCAGGAGAAGGAAGACTCTTGACCTTTTTCCTGGGCAACTCTACAGTCCCTCCCTCCTTTCGGAAGGTGAAGGATACTGGGTTTTTAGATGCCTTGTCCATCCTGTCTGGTTGCAATGTTTTGCTCCCAGAAGAGAATCAGATCATCATGTGGGGATTACCATTGTTCCTGGAGTACTCCTACCCTTAGTTGAATTTCCTTATTAAAGTTATATTTTTCTATAAGACCCTGACATATGTATGTTACTTATAATCTGTCTTATTCCAAAAGGAATTTAAATGAGTTTCCAGAG-ATATATT--------------------------------------------TATATGAAAAAGAAAAGGGGGAA---AAATT----AGGACAAAAAAGTAGAGTCAGGAATGAGGCTAATATAAACAA s canFam2.chr35 29306067 548 + 29542582 TTGAAGGATTGTTTCGGGGAGCTAGTCATCTACAATGTCATAAATAAAACTCCCTCCTTAATTTTTCACGTGAATGT-TTGTCTTATACTGCTAAAACCTC---TGTGCCTAAATATAATGAGTCCTTTCTTTCTCCATAGGTTCCAGGAGAAGGAAGACTCTTGATTTTCTTTCTGGGCACCTTATCAGTTCTCCCTCTTCCTTGAAAGGTGAGGGATATTGGGTTCTTAGATGCTTTGTCTATC----CTGGTTGCAGTGCTTTGCTCCC---ATAGACAGAGATTATCATGTGGGCATTACCATTGTCCCTACAGTACACCTA-CTGTAGTTGAGTTTCTTTATCAAGGTTACGTTTTTCTATATAAGCCAGACATA--CCTGTTATTTATAA--TGTCTTGTTCCAAAAGGAATTTAAATGGATTTACAGAGAATATATTCTTTCAGTAAGTATATCAGCTACAAAAAATATAGTATAAATTAGTGTATGAGAAGGAAAAGGGAAAAAGGAAACTACCAAAGACAAAAAA-TGGAGGCAGGAATGAGACTAATATAAAAAG a score=5482 s hg19.chr6_ssto_hap7 1363261 211 + 4928567 AAAGCAATTGTAAGTATTGCCATACTATTTAAATCTATTTGGTTCCTGAGTTTAGGTTAAGAAAAACTAGGAATTTGGATAGTGAGACATTTAACAGAAATTTTAACCAGATCTCTTTAGCATATAAATTTGGACAACAAAAAATCTGATACTAAGTAATGCCACTAAGTGATCACTATAGGTGA-------------GTA---TTTTATTAGTATTGAGATAAATA s canFam2.chr35 29306791 220 + 29542582 TAAGTAATTACAAGTATTCCATGAC----TAAATGTATTTGGTTCCTGAGTTTAGG--GAAACAAAGCAGGAGCCCAGATGCTGGGAGA-TAAGCAGATAACGTAACCAGATGTGTCTGACGTGTGAGCTGGAACAAGGAGAAGTCTGATACTAAGGTTTACCAGTATATGCTGAACACATTGGACATTTTGAAAATTGTATTTTTTTATTGCTGTTGACATAAATG a score=4103 s hg19.chr6_ssto_hap7 1363887 395 + 4928567 TATATCTATTATAATAGATTCTTATATAGAAAGAAAGAAAAAAGTAAAGTCACAAGGAATCCTACTCCACAGAGATAACCAAATTATACTGTATATCTGTGCTTGTGTATATGTATGTGGCTCTGTATATGTGTGTTGCTATATATGTGTTTGGTTTTTTTAATGGACTAGACATGCTGAACTATATCTTGCTTTTTTCTGTTTGAACTAAAAACTTTCAAGGGGAACAAATGCATACTCAGGTCCCGCATTCCTTGGCTCAAATAGTGATCAAGGGGTTACTGtaataattatcatataattgtgtggccctttatatatattcagagctctcaaac-atagctatcttgtttgaccccc----------acagcaacctggagaatgggcagggcagtcttccc s canFam2.chr35 29307011 322 + 29542582 TATATTCATTGTGATAAATTCATATATGGAAAGGTAGAGTAA---AAAATGACAAGGAATCCTACTTCAGAGAGATACT--------------TTTTTTTTTTTTTTTAAATGGGCTTTACTACGAATACAAGT-----------TGTATCTTGCTTTTT----------ATCACATTGAACGAAATTTTG--TAGTCCGGCC---ACAATAAACATTCAA----ACTTAGTTTGGAGTCAATTTTTGCATTCCTTGGCTTGCACACTGCCC-----------------------------------GGTCCTT--TGTGTGTTCTGAGCTCTGAGACTTTCCCTGAGGTGTCTGAGCCCCGGGCGACGTAGTGGGAACTGATGGGACGGGCAGGGCGGACTTCCC a score=19909 s hg19.chr6_ssto_hap7 1365269 614 + 4928567 CCCGCAGTGACACCCCTTCCGCCAAATTTGTTTCTCTTTCTTTCAGCGCCTGCGCGCTGTCACGTTACGGCGGAACTAATCCAGCGACGCCTGCGCTTTGACGCATTTGGTGCCGTGGAAGGGAAAAAGGGGGACTGCAGTATGCGTCACACCCGGAAGCGGCGAGCCGGAAGTGGGGTTAGCCAGGTTATCCCCAGGGGTGGAGAAGCGGAGGCCCAGGAGGAGGGGGAATAAAGAAGGTGGAGGATCCTGGCTACCACTCTGAATCCGATACCGCTTC------------------------TCTTAGACCTCAGCGACAGAAAAAGGGAAGGGTGTCTCATCCCCCTTCCTCCTCTCCTCCCTGTCCTGAGCCTTAGCCATGGCCGAGGCAGGGGCTGGGCTGAGCGAGACCGTCACTGAGACAACGGTTACCGTGACAACCGAGCCCGTGAGAAAGGCGGGGG--GGCGGTGCTGTTTAGGGGTCTGGGAGATACTGGGAGGGAGGGGACAGGGATTAGAA-GAGTTGTTGGAGAAGCTAGGCCTAGGGATATGGGAGGTGTGGGGTTGAATATCTAGGGCTGGGAGAATCGGAAGGTATTGGAGCTATTTGGAGTGGCAGAGATGGTGCAGGAGGC s canFam2.chr35 29307962 561 + 29542582 CCCGCAGCGTCGCCTTCTCTGCGGG---------------CTGCGGCACCTGCCCACCGTCACGTGACGGGAGAACTAGTCCGGCGGCGCATGCGTCCGGAGACCTTCGGCGCCA-GGAAGGGAC----GGCGACGGCGGAGTGCGTCACACCCGGAAGCGGCGAGCCGGAAGTGGAGCTGGGCAGGTTACCCC-----GGGGGGAAGCGGAGGCCGAGGAGGAGGGG---CCGAGGCGCTGGAGGGTCCTGGCTGCTCCTCCGAATccgatcccgatcccgatcccgatcccggtcccgGTCGTCTTAGAGCTCGGAGACA----CCGGGAAGGCCGCTTCCTGCCCCGCCGCCCTCT--GCCCTCTCCGCAGCCTCAGCCATGGCCGAGGCAGGAGCCGGGCTGAGTGAGACCGTCACGGAGACCACCGTTACCGTGACAACTGAGCCCGTGAGAAAGGCGGGGGACGGTGGCGCC------------------CGCggcggggacggggacggggacgggggcgggccgggggcgggggcggggtcagggctgcggagggggcg---------------ggcgaggggg-------------ggggcgTGCTGGGGACTCTGAGCTGGCGCGGGAGCC a score=148881 s hg19.chr6_ssto_hap7 1366414 4214 + 4928567 GGGGATCTGGAAAAAGGAAGGGAGATCAAAGATTAGGTGCTGGGGACTGA-AAAATAATTTTCATGTATTAATACTACCAAGGATGATTTGGGGAGGAAGACGGAGAAACAGCAAGGATTATATTTTCCTTTGAAGAGTTGCTGGGACCTTTCCTAGGTTAGGAATTGTGTCTTCTCT---TATACTGGTGGTATAAGAACAGGAAATAATACTT----ATTCCTCAAGGGACTATCTGAGGTAAAAGACCTGTTC--TGTTTTATCTTCTGTCAGCTCCTCTGGTGCTATGCCTATGGTACTGATTGAGCTAAAGAAGAAAAGAGAGGAGGT------TCCCTGGGAGGGAGTGGGAAAGGTTAGTAAGAGGGGACTAGATAGGTATGCTCATCCTTA---ACCTTCTAGGAGAACCGGAGCCTTACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTAGAATGGACAAGTGACACTGTGGACAATGAACACATGGGCCGCCGCTCATCCAAATGTGAGTAATTGTTGGCCCGCAGT--------------------AGCCCTGG-------AGTTCTGGCTCC---------CTTCAGCATATCTTGTATCTACTCATATCCACTGGCTTTCCAGAAGCCCCCAGATGTTCATAGTTCTGTCACTTTTTTGGTGGTGCTGTGGTATCAGGGAAAGAGGTAGGG---AAGGGCTAGAACTGGAATTGCCTAGGTCTGACAGCAAGAAGTGTCAGAGGTGGGAGAAGTGGGGCTTTGAATTCGTGGCTCTCTAAGAGGACAAGAGGGGTGGGGCCTGAGTCCCAGAGG--GTGGGCCTGGGGAAGCTGGATCCTGGAAGGTAGGAGAAAATAGGAATTTTCACTGAGTTTGAGTGGGAATGGAACTGACTATATATCTTACCCTTCCTCCTCTTTAACTGGGCTCCTCCCTCTAAATCTAGGCTGCTGTATTTATGAGAAACCTCGGGCCTTTGGCGAGAGCTCCACGGAAAGTGATGAGGAGGAAGAAGAGGGCTGTGGTCATACACACTGTGTACGTGGCCACCGCAAAGGACGGCGTCGTGCAACCCTAGGACCGACCCCCACCACCCCTCCCCAGCCTCCTGACCCTTCCCAGCCCCCTCCAGGGCCAATGCAGCACTAAATCCCTCTCTCCTCCAGCATTCCTGTGTCTGTCTGGCCCTAAATGTATCCATGTGGCTACTT-----------------------------CTCCAGCCCCCTCCTTCCCTCTCTTCTGCCTGATAGAGGGAAGAGGAAGAGGAGGACGAACAGAGATCCTGAAATTCTGACTTGCTGCTATTCCAGAACCCAGCCTCCTGGGTTTCCCCAGTCCTCATTTTTCCTCCCAATACCCACCCTTCTCTCTCGAGGGATCTAGGCACCTTGGTCCCAGTGTCTTCCTTTTGTTCTCACTGCTAAACTGCCTGTCCTGGGATCTAGTTATCTTGG------CCCTGCACTCTCAACATGAGTAGCGAACACTTAAATTGGGTTTTCAACAGTCCCAGCTTTCACTGCCAGGGTCCCAGTCAGATTCCAGGAATTTGCGCCCTAACTTTGCTTGCTAATCCTGGTTTAGAGCTATCCCACTAAAATATTTA----ATCCTAATTCTTAGTCCTTGCCTGTGAGATATGAGGTCTTACAGGAGACCTCAGAGCTCCCAGC-----------CCTTCTCCTC--CTGCTAAACCTTCTCACACCCTCAAGAGGAGTTA--GAAAAGAGGTCCTTGTCATTCTCACCTCTTATGGAAAATGGAATAAGAAATAATCATATCCTTTCTTCCCACCCTTCTCCTGTTATTTAGGATTTCTGACAAAGCTGGCTTGA-GATTGGTCACTTAGAGCCGACTGTCTCCTCTGCCTTTTGTTTTTCAGCTTCAGAGACAGATCCAATATAGTCCCAGGGACCTGGGTCTCTGGGAGAGGAAGGAAGAGGGAGGGAGCAAAGAGATTGGGGTATGTCCCCTGTAGTACACTCTTACCTCTTACTTCCTAGACTTTGATTTCTCCGGCAGCCCAGATGTTCAGTTCTCTTGGCCCCTCTCTACCCCTTACTGGGATCTGGTTTTCATTTTCCGGTCCTTT-TGCCATACACAGTTACAGAGATCAGTCAAATCCATACCACCACTGAGATCTCATTTATTGCCACAGATGCACAAAATAAATAACCCAAAATCACAAAATGTGTTAAATATGGGCCCATTTATACTTATGGGGAAGGGTGTGAGACTATACACAAGGATGAGTTTGGAGATGTCTGAAGTATTCCCAGGTTGAGGAGGAGAGAGGGGAAATAGCACCATTGGTTCCTTTCCGTGAGTATGTGCGGGGAGAAGTTTCAAGAAGGTTCTTATGGAAAAAAGGCTGTGAGCATAGAAAGCAGTCATAGGAGGTTGGGGAACTAGCTTGTCCCTCCCCACCCCCAGATCCTGCAAAAGAGGTACAAAGCTTCCCAGAGGGCCACAGGGCCCAGACCAGAGTCAAGCCTCTTGTTTTAGGAGAAACCTCAGTGGACAGGCAGGGTAGCCCAGTCCTTAGATCTGTGGGGAAGGCCCTGAGCCCTTCTGGAGCTAGGAGTGGCAAGAGTGGGAGTCAAGTATTTGACCAGCAGAGCCTCTATGTAGGAATCATGGTCACTTTACCAATACTGATGGGGAGGGCCTGTTCCCCATTGCAGGCCTAGAATGGTTTGAATGGGAGAAGTCAGGAAGTACTGTAGTAGCTGTAGGGGAGAGAAGATTCTGAGAGCCAGAAGGCAGGAATGGATTTGGTTTTGAGCAGGGACGTGGAAACGTGGAGACCAGGTGAGGTCTCATTATTTTGGGGCGAAAATGTGGGTTGCTATTAATACTCCTGCAATGGGCGTGTGAATGTGTTCCCAGAAATGAGTGGGGAATTCCACCCCCAAAAAGCAGCTGCAGGGCCAGTGGCCGGGCCAAACTTCTAGTTGGAGACGA-------GACTCAGCTTTCCGCTGGTACAATGCGGAGCGGAGCACGAGGGTCGCAGGTGCAGAACAGCGGGAAGATGCGCTCCCCCAGGGGGCCAGGCGCCTGGAAGGCGTAAAGCAGGTCGAGTGAGCGGCCGTCGTAGAAGGCCACGCGGCCCCGCTCCCAGTCCAGGTCCACGCGAATGCGCCGCGGCGGGGGCTCAACACCGCCCAGCAGGGTGGGTTCGGGTGCCGTGAGGGCCCACAGGCGGCCGCCGCGGCCCCCCACGGCCCACACGGCCCCCGCAGGGCACAGCCTTACGCAGCCCTTGCGTTGCACTGATTCCCCGGCCGCGCCCACTGCATAGTGGCTC------TCCTCGTCGTCCGC---ATCCTCCCCAGAAGAGTCTCTGCAGGAGGCGGCGTCCGCAGTCTCCACCTCCCAGCAGTGGCGGCCGGCCCCGAAGCCCTGCGCACCCAGCACAGCTGGGAGCTGATCGAAGCGCTTGGGGCCGTCAGGGGGCGCGGGCGTCCCTGGTGGGGCCAGTTGTACGCTGCGGCGGTCGGCGGAGATGAGCAGGCGGCGGTGTGCGGTCCCAGGGTCCAGGGTCAGGTCGGCTGGAGACGGGGAGGCAGGGAGAGGACCTCATGAGAGAGTTTTCTAA---ATCACAGGCGGGGTAGGGTGGAGAATAGTCAACGAAGATCACGTAAAAGACTGAGAGCTAGTGACCACACAACAGCTCAAAAGGCGACTGCAGGACCAAAAAGAAGGAAGGCATATGAAGAGCAGACCTGGGCAATA-TCAGACCTTGTACTGATGCACCACTTCTGTAGAATTGGACCTGGGGAAGGATCATACTGGCCCAGTGCAGGGAGCACAGCAGGAAGATCAAATGAGAGGTTGTCTCGTTTGTGGGGTTGGGGGAGGAAGAGTGAGGCTGATCTGACTTCGAGGGAGGAGTAAGGACTGATACCTCAATCTGCATCATCT-GGGGTGGGGCATGGGAGCTGGGTCAGCAAAATGGGGAAGGTTCATCTAAAGAGAAAGTCGTACTGATACTGGAACCTCAAGTAATGGGAGGGGCACAGGGAGGAATCCAAGGTATCCTGAGAAACCAGCCCACCCACCCACAGGAATTGGGGGGTG-GGGTGGACAGTCCTATTTCTGTAGGGGTTGTGGGGCAGAGGAGGAGAGCAGGTGGTGATAGCCAGAGACCAGAAAAAGAACCATT---GGCCTTATATGTATGGGGTGCT-TTGAAGAAAAATTTCTGGATTAGGGGTGTCAGAAGCAATCTGGA-CTGGGCAAGATGGTGGATGACCAAGATGGTGGACCACCTT s canFam2.chr35 29308805 3828 + 29542582 GGGGATCCTCACAGTGAGCCGCAGGT-GAAGGTTAGGTCCTGGGCGCTGAGAAAATCCTCCTCGAGCATTAGTCACACCGAGGCCGATGTGGGGAGGAGGATGGAGAGACGGAGAGGGTTGAGCTTTCCCTGGAAGATGTGCGGGGACCCT-CCTAGGTTAG---TTGTGTTTTCTCTGTCCACGAAGCTGGGATGGACACAGAATATGAAGCGGCAGAATTCCCCAGGGACC---CGGAGGTCACACACTTGTGCGCTACCCCACCTGCGCCGGGCCCCTCTGCCACCCTGGGTGGGGC-CTGATGGACTGGGGTGGGGGGTGCTGGGAGACATGACCCCCCAGGGAGGGATGAGGAAGGGACGGCCAGAGGGGACCAGATGGCTATGTCTGTCTTTCCCCACCTTCCAGGAGAACCGGAGCCTGACCATCAAACTGCGGAAACGGAAGCCAGAGAAGAAGGTAGAATGGACGAGTGACACTGTGGACAATGAGCACATGGGGCGCCGCTCATCCAAATGTGAGTGCTCACTGCCCTGCTGCCCATCCCCACCCCACCACCCAGCTCTGGGTGGGGGAGCCCAGGTGCCTCCTCTGTGCCCCCACCCCTCTTGGCCTTCCTTCTCACACCTGACCACCCTGAGGCCCCCAGCTGCTAACAGCCTTGTCACAGCCTGGGTGGTTCTCTGGCTTCGGGGACATGGATTAAGGTTATAGGGGAGACATGGAAGTGCCTGGGATTGGCAG------------------------------------GTTTGTGT--------------------------GCCTGAGCCCCAGGGGCAGCGGGGCTAGAGAAGCTGGACCCTGGAAGG-AGAAGGAGCCAG-------TGCTGACACCCAATAGGAGTACAACTGATTATATGT-TAACTGGTGCTCCTTTC---CTGGGCTCCTCCCTCCGAATCCAGGTTGCTGTATTTACGAGAAACCTCGGGCCTTTGGCGAGAGCTCCACTGAGAGTGATGAGGAGGAAGAGGAAGGCTGTGGTCATACACACTGTGTTCGGGGCCACCGCAAAGGACAGCGTCGTACAACCCCAGGACCAAGCCCCACCAGCCCTCCGCAGCCTCCTGACCCCTCCCAGCCCCCTCCAGGGCCAATGCAGCACTAAATTCCTCTCTCCCCCACCACTCCTGTGTTTGTCTGGCCCTGACTGTATTCATGTGGCTACCTGGGGACTAAACCCACATGGTTTGATCCCTCTCCAGCCC--TTCTCCCTGCTCCTCTGCCTGACGGAGGGAAGAT----AGGAGGGTCCACAGAGATCCTGGAATTCTAACTTGCTGCTATTCCAGAGCCCAGACTTTTGGGTTCCCCCAGCCCTCGTTTCTCCTTCCAGTATTCATCCTCTGCTCTCCAGGGATTCAGGTGTCACGGTCCTCGTCTCTCCCCTTCGTTCTCACTGCCAAACTACCTGTCCTAGGATCCAATTATCGTGTGTGGCCCCTTGCATTCTTTCCTGGAGTCCCAAACGCTGAAATGGGGTTTTCAGCTGCCCCGGCTTTCACTGCCAGGGTCCCTGTCAGATTGGGGGCAGT-GTTCCCCAGCTATGCCTGTTAATCCTGGCTCAGAGTTCTTCCAGTTACATATTTATATCACCCGAAGTCCTCGTCCTTACCTGTGGGATCCAAGGTCTCCCAGGAGACCTGAGGGCTCCCGGCAAGCTCCCGACCCTTCCCCTCTCCTGTCCTCCTCCCTCATGCCCTCCAGAGGAGCTGAGGGAGAGAGGTCTGTG-CTTTCTCATCTTTAATGGGAGATGCAAAAGGAAACAGGTATGGCCT--CTTCTCACCCTTCTCATAAGATAAAGGATTGCCAACA-------CTTGAAGACTGGTCACTTAGAGCCAACAATCTCCTCCGTCTTCTG-------GCATCAGAGACCAATCCTACACAGTCCCAGGGCCCTGGGTCCCTGAGAGAGGAAAGAAAATGCAGGGAGCACAGAGAA-GGGGCATGTCCCAGACAGTACCCTCATCCTCCTGCCTTCCAA------------------AGCCCAGATGTCCAGCTCTCTG---CCCTTCCCACTCCTTACTGGGATCTTGA---CATTTTCTAGGCCTCTGTGCCATGCACAGTTGCAGAGATGAGTCAAATCCATACCACCACTGAGATCTCATTTATTGCCACAGATGCACAAAATAAATAACCCAACATCACAAAACGTGTTTAATATGGGCCCATTTATACATATGTGGAAAGATGTGAAGCTATATACAAGGATGAGTTTGGGG--GTCTGGGCCATTCC-AGGTGGAGGAAAGGAGAGG-----TAGCACCATTTGTTCCTTACTATGAGCATGTGCAGGGGGA-GCCCTAACAAGGTCCCAAAGTGGAAAAGACTATGAGCATAGGAAGCAGTCACCATGGAGTAGGG--CTGGCCTATCCCC------------------------------------TCCTAGAGGAC-ACAAG--CCAGGCCAGA---------------------------------------------AGCCGGAGCCCTATAGCTGTGGAGGAGGACCAG-GCCCATCTGGAG--AGGAG--GCAAG-GTGGGGGCCGGGAGT--------------------------------------------AAACTGCTGCGGG--------TACCCAT--CCTGTCTA----------------------------------------------------------CCTGGTGGCCAG--GGCTGG---------GGTGCTGGGTAGGGAT----------------CAGGTGGG---------------------AAGGAGGG-------------------AGGGGACAGGTGGATGTGCTCCCGGGAGGAAG-GGGGGCTCCCTGGCGCAGGAGGAAGCCTC----CCggtggtggtggtggtggtggtggtggtggtggtggtgTGGACTCAGCCTTCGGCTGGCACAATGCGGAGTGTGGCGTGGGCGTGGCGGGTGCAGAGCAGCGGGAAAACGCGCTCCCCCAGGGGGCCCGGCCCCTGGAAGGCGAAGAGTAGGTCTAGGGAGTGGCCGTCATAGAAGGCTACGCGGCCCCGCTCCCAGTCAAGGTCTACGCGGATGCGCCGTGGCACGGGCCCTGCACCACCCAGTGGGGTGGGGTCAGGGGCGGTGAGGGCCCACAGGCGGCCGCCGCGGCCCTCCACAGCCCACACGGCCCCCGCGGGGCACAGCCCCACGCGGCCCTTGCGGCGCACTGACTCCCCGGCCGCGCCCACGGCGTAGCGGCCCTTGGCTTTATCCTCGTCCGCTTGGTCCTCCCCAGAGGAGTCTGGGCCGCAGGCGGCATCCGCGGTCTCCACCTCCCAGCAGTGCCGGCCAGCCCCAAAGCCCTGTGCGCCCAGCACGGCCGGGAGCTGATCAAAGCGCGCAGGACCATCCGGGGGCGTGGGGGTCCCCGGGGGTGCTAGTTGGACGCTGCGTCGGTCGGCGGAGACAAGTAGGCGGCGGTGTGCAGTGCCCGGGTCCAGGGTCAAATCTGCTGCACGAAGAGAGGC-GGGAGAGAACAGCTTGAGGGGCTGGCCGAAGGGGTTCCTGGCAGGATGAGCCCGATAATGTGCAGCAGAG----------GGCCTCAGGGAT----GCCCCACGACAGCTCCAGAGGCG--TGGAGGGCCAGAGTAGGGGAAGACAGGTGGAGGGCAGGGCTCAGTAGCGCTCAG--CCAGCACTGATCAGCCACTCCAGTGGACCTGGACTGGGAGAAGGACCTCGTTGGT---GGGCAGGGGGCACAGT-GTGAGAGCCAAGGAGAGGTTGCCT-GTGTGTGGGCT----GGGAGAAGAGTGAAGCCGTCC--ACCTAACCGGAGGAGTA--GACTG-TACCCTTACTGGGTGCATCTGGGGGTGGGGGTGGGGAGCTGGCTCAGCAGGATGG------------------GAAGATGGTTCTGA----------------------AGAAGGATGGAGAGGAGACC---------------CCCAGCCC-------------CATGGGGAGGTATGAGTGCACTAGCTTCTTGTTACA------GTGGGGGAGGAAGAAAGGGCAGGTGGTGATAGCTAAAG----GGACCAGGAGTATTCAGAGCCATGTATGTATGGTTTGCTCTTGAGGAGAGGTTTTTCTATT-GGGTTGTTAGAAACAGTCTGGGTTTGGATGGGATGGTGGGTGACGGAGAGGGTGGAGCATCTT a score=116169 s hg19.chr6_ssto_hap7 1370629 4260 + 4928567 TCTAGGCAGTTTAAAGAAGGGTAGAGGCACCCTTCTTCTTGGGAGTGAGTGAGGAAAGAAGGGTCAAGGAGATGCTGGGGTCCCCTTCCAGGGAGGAGTGACGAGAGGTGGTGGAAGCAGAGATTTTTGAGAGGCACCTAACCTTCAGGGATCTGTTGTTTGAATGTATGAAAAAGGAAGAGGGAAAATGGCTGGAATATGAGGAATCGAGGATAGACATtgttataggctgaactgtgccctcccccactccacacacacacacaaagataggttgaagtcctcca-aacctcagaatgttaccttgttttgaaacaggatctttacataggtaatcaagttaaaatgaaggtcattagggtgggctctaatcc----agattgctgac-ttacaaaaagaggaaatttggacacagagacaaat--gcatacaaaagaa--aatgtgcaga-------------------cctatcacccaaagaacatgtgaggctaccagaggctaggagacaggcatggaacagattctgtctcatggccgtcagaaggaaccaacactgctgacaccttgatttcagacttctacctcctgaactttgagat---aaatgtctgttgtttcagccacctactttgcggtgcttcattagagcagtactaggaaactaatgcaGACATCAAAAAGGACCTGATCACTTTTTAGGGCTAAAAGGAAGAAAATCTAACACAGACTTTCATTCAATT---CCCTTCCCTCCCTTCTTCTTTCCTTACCTGTCAGTCTATGAAGCATTTTTTTGACCACTGGATAATCTTCAGGGAGATCATCCTCTGAATTAGATGACTTGGATGTTGGGACTTCAAATCTACACAGATGAGGG-GAAGGGTCAGGAAATCAG------CCCTCTGATCCTAATGCCCCCACGCATACCCCACTCACATCTCTGGAGGAAGAAGGGATGAGACTATACCCCAGAAAACCTGCCTATTAATGGGAA------CAAAGGTGTGGGCCCAGTGAGAACGTGATGGCTATGGCAGCTGGT-GAGAAAAGGAGGGAACAGAAAAGTGGAACTCACCGTCTCCATGTCTTCCTCATATCCTAGGATGGGCAGAAACAAACATGGATGTGAGCTCTGGGCTTCATTCCCTGGGGCATCCTTCCCTATCTCTCCCCTCCTCAGGTGAGTTCTGTCTGAGTTAGCAGTGTCCCT--CCTCACCTTTCAGAGTGATCTCACCTCTTTACACACTGTGCTcctttccctctcattctcctccttcacctttcatgatccctccttcctctcaccccatcacttttccctcatcctcctaactccatccccactgtcct--ccccctttccactccccAAGGGTTCTCAATTCTCTTTTCCCAGGCTCGTCCATGACTGTTTCTTGTCCT---------CAGAGCCCTTGCC-TTCCTTGCTGCCT-CCTCAGTCCCATTCTCTGTCTCTTTCAGCGGCCCCATCCTTATCTACCTTCCCCAGTGCATCCCAGAAAAACATCTGTCCCTTCCTCCCTCCATCACACAGACCAAACACACACCCAGAGCCCTCGGGCTAAGAGTTGGTATATAAAAGCCTTACAATAAAGCTGCTTCCCCTCTTGCAATAAAAGCCCAGTGGCATTTATTGGGCCCTTTGCTTTGTGTCTCTGGACCCTGGCCAGGGAGGCAGCTAGACTTGAATGTGTCCCAAAAGGCCCAGCAGATCCACAGAGTACTATGGGAGCCAGGAGAGGGCACTGGATGCTCCCCTCCAAACACTGGGATACCGA---CCCCTCCACTTCACTGTCTAGTGCTGATGGCTGGAGCAGGCCGATA-TGGTGGAGCGGGGGAGAGAGAAACAATTTGCATAATTGTGCCAATTACTTTCAGACTAATTAGGTCTATGAAGACTTCAAAGGGCAGAAGCAAGACCCAAGACCAGCTTGGCTGCTGGGAAGAAGCCAGTCAGGAGTCCCAGACGCCCAGGGGTCGGTCGGGCAAGGGAATGG-GCTGGTTAGTGGC----------CAAGGAGCCGGGGC--------------CCAGGAGAGGCGCGGGGGGTAGATGGGTGGTAAGACTGGGATGTGGAGAGGAGCCAGAGGCCCCAGCGGCTGT---TCTCCCGCACCTCGCCTCCACCCCTGGCCGCTCCTGCCTGGGGCCTTG---GGAGGAGCCGAAATAACAATAACAAACA--ACACAGGGCTTAGCTTGAGCCAGAGTCCGAGACCAACCCCCACGACGCTACGGGG-----------AGGTTTGGATATGCCCCAACCCCTTGCTCCCTTCCTCCATCCTCTTGTCAGTCCCCTCCTCCCCAGCTTTTTCTCCGCCCCCAACCCACCAGCCCAGCCTCCTGCTCCCGCTCCTCTAAGCAGGTTCTGCCCTCGCCCACCATCCTCCCA-----GGACCCCTCCTCACCCTCAGCTGGGTCGGCTCTCCCTTCCGCCCGCCGCTCCCTCCCCT-CCGCCAGCTCTCCTCCTCCCGGGCG--CCTGCGGCTGCCCTGCCAAAACTTCTGCAGTTCCCATGCCCTTCGCGGCGACTCCAGGGCTCTCCGCGTTCTATCCGGTACCCCTTCTCTGCCTCCCCAGTCTCTTCTCTCCAGCCCCTCTCACAAGGCTCAGGCATCGGTCCAGCCTCCTCCCCTGTGGACCAAGTGTCAACTCCATCCATCGTCCTTCCGGGCGCCTCTCACCTTGAGGACCCAGGGTCCTCGCCCCCTCATCCTTTGCTTTTCTCTCCCCACCCCATCCTTTGCCTAAACTTCCACAGGGCCTCCGGCTCCAGACGTGCCATTCCCGGCTTCCCCGGGAATCTCCCGCTTCCACCAACAACTCCGCGACGCGCGCCCAGCCTCACCTCTCCGGGCAGGTCCAGGCAGCCCATGGTGGGGATGCGCCCCCCTCGGCGTCTCCCCGCACGGGCCCCAGGCTCAGCCAGCTTCTCTCGCAGCTCGCGGCTGATTCGCACCTCCACCGCCAGCCGCACATTAGACCTCAGGCTGCGGCGGGGACACGGCAGGCCGCAGCAGGGACAGGCGGTGGGGGAAGCCTCGGTGCCGGTCGCCGGCGGAGTCCCCCAGCGGCGGGCCAGACACGCGCGGCAGAAGCTGTGCTCGCACGCCAGAAGCACCGGGTCCTCGAAGGAGCCCCCGCACAGAGGACACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTCGGGCGCATCCATGGAAAGCCAGGATCTGGACGCCGCCCCTTCCGCGACCACCGTGACCGCCTTCGAGCGCGCAGATGGCGGGCCGCCCCTGCTGCTTGCTGTGTAGATGCCCTTCTCTCCGACTCCCGCATTAACT-TTTGCCGCTTTCCGCCCCTCTCCTGGGATTGCCTCTCTCTTCAACCAGAGTCTCAGTCTCGTCAAATCTCTCCACCACATCAGGCTTTATAGGGAGGGAGGAGGCTCCCACGGGAGGTAAACACCAGGCCTTGCGTAACGCCTCATCTGGTTCTCCTGCTTCCCGGGTAAGGTTTG--GGGGAGCAGGGAGGGGAGAAT----------------AGCACACCTGGTTCCCAGAGCCTAGGAGGCGGTCACTAGAGGGCGCTCTGGGGCGGGGTAGCCCTGTGTGGGGAGGGTAGCCCCCTGTGACCCCCCGAAGAGCCCCAATTTTACCTTCCCCTCCGCCTGTGGTACGCGCATGGGCCGGGTGCCCAGGCTCACTCTTGGCATGTGCGCCCACATTGCCAAGGTGCGAGTCATTCCAGGTGGCTGGCACACCTACATCTGGGGGCTGGGGGCCGGAAGCACAGATCCTGGTTTGTGTGGCTTTGGCAAGCCTCTGAGTGTTGATGTGTGGTTTTCATTCCTGGTGCCTCTCGCCTTTCCATCTTCCTTCCTTACCTATTAAGGGCTTAAGG----GCATTCTGCAGCTCTGGGGTAAGGGGTGGGGAGCAGGCGCCCACACTTCGGCCTCAGGGAGTCGGGGCAGAGCTCTTTCAGCTCTACCTCTGGCCAGCTCCCAGGGCCTCTCC--TTACTTTCTTCGTAAGTCTCTCTTTCTGGTTCTTTCTCTCTGTTTTTCCCCGTGTGTGATTTTATTACCAGTTTTCTCTTTCCTTCCTTCTTtggaatgtaccc-ggtattatctattt-caactctggtagttcacagaggcccagagaactggaatagccaaggtcacatagcaagggaatgaccagaagtggagccctaccctggtcttctgacttgtgttcttgctgtgactcaaccctgccTTTTTCAGTTGCAGATCCCTGGGACCCCCTCCTGCTTCCTGATTTTTTTC s canFam2.chr35 29312756 3762 + 29542582 TCCAGGCAGTTTAAAGAAGGGACAGGGCAGCTGCAGTCATGGGGATGGGGGTGG------GGGTTGGGCAACTCCTCAGGAGC---TGCAGGGAAG---GCCCAGA-GCCCTAGAAGCAGAGAGATGC-AGAAGCAGCTGACCTCTA-----CGGCTGTTTGTA--------------------AGAGTTGCGGG------------CCGTGGTGGACACTGTTAGAGg------tgttccc------------------ctcaaacagatatgcagcagtctcccagggcctcagaatgtgaactcagctggaaagagg--ctttacagagctcattcagttaaagtg-aggccgttagggcaggccctagtctgataggacttgtgtctttacaaaaagaggaggtttggacccctagacaaatgagcatggaggggaagcaacatgaagacgacacagggagaaggcaccccataggccctggagcatctgcagctcccagacgccagcagacaggc-tccatcagatttgcccccacagccct---aacgatccaatcccgccaacacctgtctttccatcgtctatgtccagaactgtgggactgggatcatctgctgttgcagcc-ctcagcaggtggtgctc--tgagggctgccctaggacgccaacacGGACATGAAAGAAGTCCTGAATGTGTTAGAGGGAGAAGAGAGAGCACACCTGAACTAGACTCTCACTCAGCTGGGCCCCGCCTGCCC--------TCCTTACCTGCCAGTCTGTGGAGCATGTTTTTGACCACTGGATAGTCTTCGGGGAGGTCATCATCTGAGTTAGATGACTTGGGTGTTGGGACATCAAATCTGGACAGATGAGGGAGAAGGTTCAGGAAATCAGGAGACACCGTCCG-CCCTGATG-------------CCCACCCACATCTCTGGAGCAGGAAGGGGTGAGTTCCCA-TCCAGAAGACCTGTCCGTGAATGTGAATGTGGGCAGAGATGTGAGCCCA-TGGGGAGGGGATGGATGCAGTCACTGGTAGTGGAAAGGAAGGGACAGTAAAATGGAACTCACCTCCTCCACGTCTTCCTTACATCCTGGGATGGGCAGAAGAAAACATGGATGTGAGCCCTGAGCATGGTG--CTGGGGGGCTCTCCCCTCT---TCCCTTTCCTTGGGGAGCTGGTTCTCAGTGGCTAAGATCCCTGGCATC--------------TCTGGCCTCTTTG---------------TCCCCCT------------------------GTGCCTCCTTCCTCT----CCATCATTGT------------------------CCACTGCCTTTGTTTCCAGCCCATTTCCCAGGG--------TTCTCCTTCCCCAGCCTTCTCCAGGACTTGTTTCTGCCCTCTTACCTTCCGGAGTTCTCACCTTTCCCTGCTGCCTCCCCCAGCCTCATTCT--------------------ATCTTTATATACCTTTCTGAG-----------------ATTGTCCCTCACCC-----------TAGACCAA----ACACCTGGAGCCCCAGGGCTAAGAGTTGG--TATAAAAGCCTTATAACAAAGCTGCTTCCCTTCTTGCCATAAAAGCCCAGTGGCGTTTATTGGGCCCTTTGCTTTGTGTCTGTCTACACTGGCCAAGG----AGTTGGACCTGGATGTGTCC--------------------TGGGGTGCCATGGGAA-CAAGAATGGATGCTGCCCGCCCCCCTCCAAATA----AATATCAGGCCCCCCTTCCCATCACTGTCTCTCAGGTATGACTGGAGCACACCTGCAGTGGTGAAGGGAGGAGAGGAAAGAGAATTTGCCTAATGATGCCAATTACACCTGGACTAATTAGGTCTGTGTAGACTTCAAAGTGTGGAAGCAAGACTGGAGACTGGCTAGGCTGCTGGGAAGAAGCCAGTGAGAAATCCAGGACGCCT----GCGGGTCTGGCAAGGGACTGGCGCTGGTGGGTAGCTGGTGGGTGGCGGGGAGTTGGGGCGGAGAGGGGTGTGGCAAGGGGGGCCAAGGGGAGTGGAGAGGTGCAGAGAT--GCAGGAAGTGAGGAGTGCGGGGGCGCAGGGTGTGTGGGTCTCCC----------------------------------GGGCCCTGAGAGGGGGAGCCGGAGATCCAGTAACAAGTAGGGCCCAGAGC--GGCTGAGGCCAGTGACCG-GAGGGACCCCTG-GACGCTACGGGGGAAGGAGGGTAGGGTGTGGATCTG---------------CTTTCCCTCCATTCCATATGCA-------------------------CCCCCCCACACCCCCCGCCGAGCCT---------------------AGGTCTGATTCTAGGCCGTCCTCCTCCTGGCCGCGGCCACCTGGGCTCCCTC--------CGGGTGTCCATTCCCCGCGCGTCCCCCGCATCTCCCGCGAGCCCT----------GGCGTTCCCGCGGTCAGC--GCAGGGGCTT----AGGTGCCGCCCCCT-------GACCTCGGGG---------------TCAGTGGCACCTCCTTCCCCCGCTCGACCCTTC---CCGGCGCCTCCCCCGGGA-------------------------CCTGTGG-CCAG---------CCGCCCGCCACCCCCCCA------TCCTGCCTCG-----CCA---CCCCCTCTCCCCCGTCCTTTGCATTCCTCT----GATCCGTTCCTTGCCTAAACTTCCAGAAGAGCCCCGCCGCCGGG------------AGCCCCCGCGCCTAACCCCCG----CGGCGGCAGGTCACCCACCGGGACTCCGCCTCACCTCTCCGCTCGGGTCCAGGCAGCCCATCGTGGGGATgcggccccctcggcgcctccccgcgcgcgccccgggcTCCGCCAGCTTCTCGCGCAGCCCCCGGCTGATGCGCACCTCCACCGCCAGCCGCACGTTGGACCTCAGGCTGCGGCGGGGACACGGCTGGCCGCAGCAGGGGCAggcggggggtggcgcggggaccccggcggcgggcggggcgccccagcggcgggccAGGCACGCGCGGCAGAAGCTGTGCTCGCACGCCAACAGCACCGGGTCCTCGAAGGGACCCCCGCACAGCGGGCACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTCGGGCGCCTCCATGGGGAACGCGCGCCCGGGCGTCCGGCCTTCCGCGGCCTCC---------------CGCGCCCTGGGCGGCCCTCGCCTGCTGCTCGCCGGCTGGACGGCCCTCGCTGCGCCCGGCGCATTCACTGCCTGACGCCCTCCGGCGCCCTCCCGAGAAAGCCTGTGTCTCCCAGCAG---CTCGCTGTCCACCGCCCTCCCGGCCGCATCGGGCTTTATAGG--GGGAGGAGGTCCCTGAGGCAGGTAAACATCAGGTCTTGCGCAACCCCTCACCTGCTTCTCTGGCTTCCCTGCTGAGGTTTGAAGGAGGGCGGCGGGTGGGGAATGGGGTGGAGGAGGGAGAGGACTTCTGGGGCCTGGAACCGAGG-GGTAGTAGGGAGGGGAAGCTCCTGGGGCACTAGGCCTGGTGTGCGGAGGGCAGCCCCCTGT--------------------------CCTCCCCTGGGCCTGCCCTGGGCCGGTGGGCAGGGTGCCCTAGC-CGCTTGTGGTATGTGTGCCTGCATGGCCAGGGCGTGAGTCATCCCCAGCTGCTGGCACACCTATATCTGGAGGC-------------------TCCTG-------------------GCTCCTGTCTGCTGTTGTCGGGGTGACACTCCTG--------------TCCATCGCCCTGCCTTACCTATTAAGGGCTGAGGAGCTCGCTCTCTGAGGCTGT-GGGCAAGGGGC--GGAGCAGGTG----TACTCCTGCCTGGCCCAGTGGGGGC-----------------ACCTCTGGCTGGCTCCCAGAGCCTCTCCTATTACTGTCTTCCCATGTCACTCTTTCTAGTCCTTTCTCTCAGTTTTTCCTGCTGTATGTTCTCATCTCTA-------CTCTCTTTCCTTCTTCTGCCTGTTCCCAAGGGTTATCTCTTTGCAAATCTCTTGGTGAACGGCAGTGCGGAGAGCTGGCATTGCCAAGCTCACACAGCAAGGGAATAAGCAGCAGTGGAGCCCATCCCAGA---TCTGATCTGAGCCCTTGCTGGGACTCTACCCTACCCGTCTCA-TTTCAGGT-CCTGGAACTCCCTTCTGCTTTCTTTCTCTCCTC a score=4443 s hg19.chr6_ssto_hap7 1375431 158 + 4928567 GACACTCAAATATGACACCCTGATAAACAAACCTACACAAACAAACACACGTACAT---TCATCTTGGAACAACCCTCCCGGCTCAGTGCTCATAAAACACACAGATACCCAAGCATAAGACTACAGTTGTGACTGAAATCTATTTTGTAAAAGATGCACT s canFam2.chr35 29316541 140 + 29542582 GACACTCAAACTGGACACCCTGATAAAT----CTACACAAACACGCATGTGTGTGCGTATTATCCTGGGACCAGCTTCCCAGCTTA-TGCTCA----------------CCAAGCAGGAGCCCGCAAACGTGACGGAAACCCAGTACGTAAGACAGGCTTT a score=6187 s hg19.chr6_ssto_hap7 1375778 317 + 4928567 atttttgcccagtaagacccatttcagactctg-aactacagaataataaagtaacaaatgtgtattgtttcaagctccta---agtttgtgg------taatttgttacagtatcaataggaaactaatacaCAAGATTGCCTTTTCTCCTCCAGTCTCTGACTCTCTGAGTCTGTTTGCACTTCTGTGTTGTTGCACCTTCCAGTTTGTCATATTTTCTGGATGTCTCTGCCTCTCTTGACCTTCTTTTCAGTCTCATGTTATCTCTTTTC---------CTTCATTGTCCTGGCTTATCCCCAACTCCAAGGCCTCTCAGGATCTTTTTGGAT s canFam2.chr35 29316980 323 + 29542582 ATTGTTGCCCAGTGGTACCCACGTTGAATTCCGGAACCACGGAGGTGCTAGGTGGTGAGTGC-TGGGGTTGCAACTTCCTATACAGGTTGCAGATCACCTACGCTGTAGCGGCA--AATAGGAAACCACCACACGTGCTTCCCCATTTGCCC---ATCCCTGATCCTGTGGGACTATCTGCACTACTTTTTTCTCCCTCCTCCCG--TTGCCACTGTCTCTGGACATCTGTGCCTCTCCTGGCCTTCCTGTCCATTCTCTGGAGTTCCTTTCCTGTGGATGGCTTCAGTCTCTTGTTCCATTTGAAACCTCAAG-----TCTGGGTCTCCTGGGAT a score=2159 s hg19.chr6_ssto_hap7 1376513 66 + 4928567 ctcctccagagcttcacatggctttctccattttctcactcatgtctcaacccaaaggtaacattc s canFam2.chr35 29317322 64 + 29542582 CCTCTCCAGA-CCCGACATGACTGTGTCCATCTG-TCATTCGAGGCTCAACCCAAACAGAACATAC a score=41190 s hg19.chr6_ssto_hap7 1376579 1984 + 4928567 agagaggacttcttttaccacttgtatctcaagtggtctttctcaaaggtattcactatctctttacccatatttattatcttcatgctatttattactgtctgcagtgatctatttatggacttttgatgtgtctctgtccaatagaaggtgagt------gaacagggacctaaccttcatgtttgctgctgctttccctgcacctagaatagcacctggcacacagtgagccttaataaaCTTAGGTCCAGTTGTTGAATTGCTCATTACACTGATTGGACAACCTGAGAGGGTCATTTGATTGACTCTGCTTAGACCTTCT------------TATCCTT--CTCAACCAATAGTCATGCCTCACTGGCAGATGCCAGGCATAGTGCTGGGAAACGCTCAGGTGTTATAAGACATATGGTGCTCAGTCTGGCTAGGAAGTTCATGA-CTAGTTGTCATTTGCCTTCCATAACCAGATGGTGAGGATTCCTGCTAACAAAGCATCAGCTCAACCTTTACGTCCAGGTTACAATGAGTTCATACCTAATGGTTCCAGGACAC-CAGTAAGGGAAAAGGCATTTGGAGACAGACTCTGCCTGGAAACATCTCACTTCTCAAGACCTTCTCCCTCCCTTTCCAGAATCCCTAACAACTCTATACTTGATGCTCTAATCACCACTGAGTTCATTCTATTTCCAGAGAGCCAGAAGGGTGGATGTGATTTT--ACGTGTGTCAGCTTGGCTTGGCTTGATCCAGTTGACCATGACGGGATCCTGTCTCTCTGCTAGGATCCACATCTTCCTTCCTTAATGTAGGTGTCTCCTAAATAACTGTTCCCACCCCTTTCCAACTCCTTCCAGGATTCCTACTTGTGGTGTTGTGGAGTGTGACAGCTTGATACCCATGCATGGCACTAGGGAATGTCAGAGGTGGGACAGGCCTTGACCCATCCC---TTCTTTTCCTTCTCTTCATTTTTTTCTTCTATCCTTTCATTTATCCTTCAGTCTCTCTCCTCCATATTAGCAACATCCTCATGCTTTTAAAAGCCCCACTAGTCTTTAGAAGCTTTCCAGAGGGAGAGATAAGTATGATAGAGGAGTTTGGGAGACTGATCACAGGACAGTCATGGTCCCTGCCCTTAGGAAGTGTGATAAGGCAGGTAAAGTGTATCCATCATCAACAAAATTTAGCATTACTGAATTAGGGTGTGTAAGAAGGCAGATAAAGTGTATCCATCATCAACCTAAATCTGTCATTACCAAATTTTAAAGGTGCAGTGACGGGGGAAGAGTGAG-GGAGGATTCTGTTGACAGATTGAAGGACAAGTGGGAATCATTTCAGGAAGTCTTCCAGGAGGAGGTGACCTGTAAAAGAAGTGAAGGTTGTGTTGACTGGAAGAGAAGTGAAAAGGCCTGAACAAAGAATGTGAAGCATCTCTGGGGAGAAAACT-GGATTGGGAAAAGAAGGGCTAGGAGGTAAGAAATCAAAATGAAGGAGACCATAATTCTTTCTCAATTCCCACTCACTATGCCCTTCCCA-AAGATTTTCTTCAATCTTGATTGTTTCTATAATGACTCATTTTTTTAAGGACTTGGATGTTTACACTGT-GCTTTAACATAGCTGGAAATTCTATTAGACCAGAGCAGTTTTCCTATGCAACTACTCCAAGGACTCTGAGTAAAACTTGCCCTGATGGGGGAGGCAGTTTTAGGAGGGGTGGCTTGAGGCAGGGATAGAGGAAGAATATCCAGCCAGATTAATCCAATCAATCTTGATACTCAAATACATGA-CTATGTTATAGAAATGTCACcttcatagtccattctctcatttaaccctataacagccgtgaggccaagtccagccatgttacactgaggcccctgggattctggcatggtaagggatttgactaggctcaaacagccggcaggaggcagagccaggactgaaattcaaacctgctggctccaaagtctatattcttttcCTTAAATATTAA s canFam2.chr35 29317580 1709 + 29542582 GGAGAGGATATCACTCAGCACC-ATGTCT-GAGGAGTTCTCCACAAGGGCACTGACTGTCtcctcacccagagttactgtcctcctggcagt-gtcaccacctgaaatgatctagctgtg---ttttgagctgcttctctccaacaaaaggcagttttactggagcagaaggctggccttcaggtt-------gcggtccctgaacttggaatggtgcctggcacacggcaggtctcggcaaacatACATGCAGTCGTGGAATTGGCTGTCACCACG--TGGGTGAAGTGAGAGGGACTTCTGACAGACTCTGCAGAGACCTTCTAGATGCTGGCCATAGTCTTACCCCTACCAGCAGATCTGCTTCCATGGCTGAGGTCAGG--TTGTGCTGGGGG-TGTTCATGTG--GTAGGGCAGGTGGCATTTAGG--GGCTCAAGAGCTCATGGTCCCATTGTCACATGCCTTCTGTCAGCAGATGCTGAGGCTTT-----------------GCTCTGCCCATGAGGTGTGGTTCCGGTGAGCTCACACCTAGCAGTTCTAGGATACATAGCACGGGGAACAGCCTTCGCAGGTGAATGCGGCCAGGA--TGTCTCACTTCCTAGGACTCTCTCCCTCTCA--CCAGAATCCTTGACAACCAGG-----------CTAATCCC--------TCATTCTATCTGCAGAGAGCTGGATGGGTGGACGTGCCTGTTGGTGTGTGTTGGCTTGGCTTGGCTTG---CCGGTGACAGTGACTG---CACGTGCCCTTGTTTGTG-CCACAC----------TAACACCAGTGCCTCCCATGCAGTCGTGCCCACCC-TTCCCAGCTGCT-CCAGCCTGTTCCTGTGCACTCATGTGGAATGTG------CAGTACCCACACACAA-GCCAGGGAGTAC------TGGGA---GGCTCAGCCCATCCACAGTCTGTTTCCTTCTCTTCCTGCCTCTTTCTAGTTTGTTTGTTCCTCAACCGGTCTCT-GCCTCCATTTCAGTGACATCCCTGTCCTTTCTGAGAGTCCACCCATCTGCAGGAGCCTTCTAGGAGGAGAGGTCAGTAC-ACAGCAGTGCTTGGAAGACT----------------------TTGCCTTGAGGGAGTGTGATGAGGGAGA----------ACATCAT----GGAATCCACTATGACGGAATTAGGGAGCGTGATAATGCATG-AAGATGCCTCCAGCACC---CTGAGACCATCATTACTGAAGGT-AGAGGTGCAGTGA-GCCAGGAGAGTGGGTGGAGGGTCATGTTGACAGATTGGGGGATGAGTGGGCCTGATGTCAGGAAGGCTCCCTGGAGGAGGAGACATATAAGTGAAGAGCAGGTTGGGTGGAGTGGGAAAGAAATGGAAAAGCTGAAACAAAAATTGTGAAGCCTCTTTGGGGAGAAAACCAGAATTGGGAAAAGAAAGCCCAGGCAGAAGGAAGCATGAATCAAGGAGGCCATGGTTCTTTCTCCGTTCCCACCTGCTGTGCCCCATTCACAAGGGTTTCTTCAATCCAGGTTGGTTCTCTGAGGACTCATTTTTTCAAGAGAACTGCTGAGTATGGTATGGTTTTAACACAGCTGGCAG-----------------------------------------------------------GCTGTGTTCGAGTGGGCAGCTTCCTG-GGAGCTGCTGCGGGTGGGGAC----GGTGAGGATTCAGCCAGACT-CTCCAAACCACCCTGACGCTCAAGGACATGAGCCTGGTTCTAGGGGCATCA----CACAGTC----------------------ACAGCCGTCAG---------------------------------------------------------------------------GGCTGAGAGCAGCACCGGGGCTGAAATTCAGATCCACGGCCTCCAGACACTGTGCACTTTCCCTGAAACGTTGG a score=4019 s hg19.chr6_ssto_hap7 1378563 81 + 4928567 TTTCTTTCTTTTGAGACTTTACTTTCTCTTTTCTGTCCCTCCTGGAAGGCTCCTTCCTTTCTCTCCCTTTAAATCCCTGCT s canFam2.chr35 29319479 80 + 29542582 TTCCTCTCTTCTGAGACTTGACTTTCCATTTTCTGCCCCTCCTGGGAACATCCCTTGTCCCTGTGCC-TTGAGTCCCTGCT a score=1781 s hg19.chr6_ssto_hap7 1378712 84 + 4928567 TCCTTCCAACAACCCACCTATCAATGTCACTAATATTTCT--ATCCATCATTTAAATTCTCCCCTAAATGTTCACTATTTGTCTTC s canFam2.chr35 29319599 85 + 29542582 TCCCTCTGACTGCTGCCCCCTCAGTGTCACGGATACTTCTCGGTTCACCCTTTCAGCT-GCCCTGAAGCCCTCTCTATCCATCATC a score=13942 s hg19.chr6_ssto_hap7 1385239 404 + 4928567 tcatccattcatttaatcattcaacaactatttactaagcacctactatgtaccatgcgttgttctaggagttaggaagagtggagagcaagccagccatagtcccttgt-cctctggtaatttagattccattgaaaaaggccaacaataagcaagtaaacaaataaattaacaagataattatagattgtgatcagtgctttgaagaatacaaagtgggtaatataagaggaattaactggaggaggtgtgcactacttttaataggatgttagaaaaagctcctctgagaaggtgaag---agagggagccagcaatgagaagagttgggagagagcaacaacagcagatgcaaagaccctgaagtgggaaagatcttgaacgtatgaagtgggatgacaatggt s canFam2.chr35 29319753 371 + 29542582 TTGTCCATTCGGCTCCTGGCtcagcagtgacgtactgagggcctcctatgtgtca------------------gaggacaaaggtggccaagccagccactgtcccttatccctccagcaagttagattctgttgggaaagactaaccataagcaagtaaacaaataaattaacaagataattacaga-catgataagtgctttgcagaatatcaaatgggtgacgtaagaggaattgcctggaggaggtgtgtaccacttctaatagggggttagaaaacgcttctcgggggaggtgatgtttgagcggagccctgggtgccaag---ctggagccagcagcgggaacagatcttg-----ctgaagag----------TACGTGCACCAAGTGTGATGCCGTTGGT a score=593 s hg19.chr6_ssto_hap7 1385666 86 + 4928567 taagagccaagctgtgtaggaccttagggaccaggataaggagttgatcgttgttctaagagcagtggaatgccactgagtagctg s canFam2.chr35 29320351 68 + 29542582 TAGGAGGCAA-------AGGTGCTAAGAG----GGACAAGGCCCTGGGTTCTACTCCACGAGCA-------GCCATCATGTGGCCA a score=3667 s hg19.chr6_ssto_hap7 1385928 292 + 4928567 gatttatgtattttgaagctcattttgTCCTAGTAGTCTTTTCTCTCAGTTTTCTTTTTCTAATTCCTATTCCCCTTCACATTATTTACATTCAAGACGATCATCTCATTTCCATGTCCACTTCCCCATCGGGGAGAATAGGTCTTCCAAACAAGTTATTTATTAACCTGTACAAGGATCGCTAGTAAGTGCACCAAATATAGCTAATTTGATTCTGGCTCCCACCTCTATTAAAGACTTCAAAgaatcatagatttgtagaatgctagagttgtagggaacattaacaatg s canFam2.chr35 29320419 239 + 29542582 GGTCTGTGTGGTCAGAGCCCCACATAGCCCCAGCCACC-------------------------CTCCTCTTC----TTGCATGGTCAACAGCTCA------CATTCACTCTCTGTGCCTGCTTTCCCATCAGG--GGACGAGCCTTCCAGAAAAGTAATTTGTTAACCTGTGC--------------AGCACACCATGTGCAACC-ATTTGGTTCTGG-TCCGGCTCTTACTATGGAGTGTGCAAAACCCCAGATGGGCAGGATGTCACAGGTAAAAGGGACATTTAAAAAa a score=2992 s hg19.chr6_ssto_hap7 1386224 140 + 4928567 gtctagcccttacaatatggataagaaaattga-ttcccagagagatgaTCTTGCTGGTGTGTAAGTAGGGAAAACTTTCGGATCCTCATCTGTCAAGAATGCAG--GAGCAGGTTCCTTCCTGTCTTTTAGGCGCCTGTTTC s canFam2.chr35 29320845 129 + 29542582 AGGTAGCCCTCACACTGCAGGTTAGAAAGCAGAGGTCCCAGG----------TGACAGGGTATGAGTGGGGCAGCCTTTCTGGTCCTCATC---CTCGAGCGCAGCAGAGCAGGTTGCCT-CTGTCTCTTCCACACATATTTC a score=9861 s hg19.chr6_ssto_hap7 1386788 339 + 4928567 GCTGCCCTACCCCCATGCACATTTCATGTTTATTGGGGCTCATCCATGCTC---TTCTATaggaaaatagcctctacctcacttctgcatttcaaatctcatagaaatacatttagttggaaggacttaattcatgtccagaatcctagctccaaaaattctgagaaatagagttttttacttttcaatctcttcaatagaaaggAAATGAGGTCATTCCATATATGtaggtttggcagataaaatgcagaacatccagttaaatttgaatttcagataaacaatgattttttagtataagtatctcccaaatactgcat-ggggcatacttacacaaaatac s canFam2.chr35 29321270 293 + 29542582 GCTACTCTCTCCTCCT-CGGACCCCGTCCTTGTC-GGGCTCAGCTA-GCTCATGTGCTATAGGAAGTTGGCCTCC-CCTCACTTCTGCCTCTCGAATCCCACATACACACATTTAACTGGCAGAACCTGA-----------------------------GCCGAGAAGTTCAG---TTTACTTCTCCA-------AACATAAGGGGAATGAAGTCAACCCGTATGTCtacagctgccagataaaatacaggacatccagttaaacatgaatttcagataaaaaatg-------aatagaaatatctcccaaatattatataggggaatacttgcactaaaaat a score=10236 s hg19.chr6_ssto_hap7 1387127 293 + 4928567 ttgtttattatttatctaaaattcagatttaaatggacatcctgtacttttatttgat-aaatctgacaTTTTGACAAATCTCCagcacagagactgagagcagaagtccttaatttagatgggggacattgaggaaggcccatcttccaaggtgatatttaaggggagacctgagagatgaataagagatcatcatgctcaaagaggagagaagggcattgcaggcacaggtaacagctttgcaacagc-ctagaggcaagaacaatttgggctaatttaagcaaagttgacac s canFam2.chr35 29321761 274 + 29542582 tgatgagttattcttctgggattcagatttaagtagatgtcctgtgtttttgtttgctgaaatctggcagccctaCAAAGATCTGGCACAgtg---------------ctctagttgagat-ggggacactgaggaaggcctctcgg-ggaggcaacatt---gaggagacttgagagatgaatgaaacgtcatcaggaacagagaggaaggaagggtatc-caggcccaggaaacagctttgcaaagatgctgaggacaggaacggttcagggcaatttaaagaaagctgatgc a score=18919 s hg19.chr6_ssto_hap7 1387420 1178 + 4928567 atgatgagttaggagtaaagatggcacaagataataatgaagacgtaggcagagactagaGCAAGTGAAATCT-TAAGTTTTAGTAGTGGAATAAACAAGAGTGGAATGGGGGAGACCCAGGGTCACTACCTGCTAATGGCATTCCCAGAGTTGTATACGGCAGTCATCCCAAAGAGagaaaactatgccagtaatttaggtgagaaaggatgatggcttgagatagtgggatccagtggagctgaaaatgagcaggccaatttgaagtgtattttgtagatagaattgacaaaaacattgaagtggcctttgggtgatgagggaggggaaaatcaatcatgaatttctaatttctggaatggatgactgTGTAATTGCAAGGCTGTTACAGAAATGGGCTACATACTTAATGAGCTTTGGATGTTGAGATGGGATCACAAGAGAGGGGGTAAAGACAAAGTGATGAGATATTTTGTTTCAGTTGGACCACAGTCCACAATAACTGCTTCTCCTCTCTGCAGAATATTCACTAACATGCACGAGACCTGTTTGCTCTGtccttctctccttcctccctgccctccccttcatcattttctcctttttattctctgtcctttctttctGTTCTGTAGTCATCCTATTTCCTTGACAGAATCGAAGCCTCAGCCAGTGAGATAGATGGAGTGTAGGCAGCTAGAAATGGAAAGGATTCCTGTGCTTCTGTGATTCACAGTCTCCCAGTGGGCCTTTAAACCATTTAACCTCTGTTGTCCAGACCCCAGGAAGAGGGGAGGCTGGAAGAGGGAAAAGAACTTGGACTGGAGCAGCAGGGGAGGCCCTGGAGGAAGGAGCAGGTATCATCCTCCAGCAAATGGGCAA----TCCATtagtccaaactcctcattttaaaattgaaaaaactgaagccTTTGCCCATTTTGACTAAACCAGATAAGAAATTATACAGTATGAAGGAACATTGACACCACTTAGAAACAGTAGGGTGTCAAGATTTGACTTGACTCTTGTTAGTTTTGTGACTATAAAGTGAAAAC------AATTATATCAAAAAATTTGTTTTAGGGATGATAAAAGTAATTTATacttattcgttcaaaagtacttattaaggacctactatgtg-cagatacagtgttgaaagctagggactcagtggagat s canFam2.chr35 29322254 962 + 29542582 atggtgagctggaggtcagggtggtgccag-ta--gatgaagactcaggcagagaccaggtcattcagGGTCTCCAGGTAGAAGCAGTGCAATACGACGAGTTGGAATCAGGGC-CCCCAGGGCTTTGAAT--CCAGTGGTATCCCCAGAGTTTTGTGAATTGGTCAT-CTGAAGAAAG-AAACTGCTCCAG-------GATGAGAGAGGACATTAG---------GTGGGAGCTGATGCAGCTAGAAAGGGGCAGGTGGGCTCAAAGCGTGTTTTGTAGATGG---------AAGCAATGCCATGGTCACTGGGGGTCCTGGGGGGGGGGCATCAAGGATGAG-TTCTAGCTCCTGGAAGG---GACCAGGTTCCTGTAAAGCT---------------------CTTGAGGAGAGCTGGGCCTTGGGATGGGGTCACGAGAGAGGGGGTGAGGACAAAG---TGAGACA---------------GCCCCTGTGTGCAAGCACTCCCTC----------------------------CACTGCACTTACCTGCTGGCTCCTTCTCCCCACCCTCCTCATCTGTACCCCCACCACACTTGCTTTGTTATTCTCTCTTC-----------------------------------CAGAGTCAGAG-ATCAGCCAATGGGGTGCATGGAGTATAGGAAGCCAGACAGGAGTGTTTTTTTCCTGGTTGTGGGGTCTGCAGTCTCCTAG-GACCCGGTAAACC---TGCCCTCTCT--TCCTGGTCCTGGGGAGGGCTGAGGCAGG-------------------------------GGGGAGGCTGGAGAAGGAGTGGCAGAT------------------GGCAAAGCTCCTATCAGCCCAGACCCTTCATTTTACA----------------TCTTTGCCTGTTGTGACTGAACT-GGCAACAAGCTGCCCAGAACAAAGGAACAC--ACACC-TTCAGAAAC---TGATTTCCAAGGTTTGACTCAACTCCTGTTAGCTTTGTGGCTTTAGACTGGGAACATTTGTACTTATATC-AAAGACTTGTTTTC---ATGATCAAAGGAAAtcat--ttatcca---acagatatttaggaagcccctactatgtgccagatactgtg-agggggctggggctccaaagaggat a score=4123 s hg19.chr6_ssto_hap7 1388598 125 + 4928567 caacacagacag-gaacc---tggcctcatgggaattctaaactctagcggggagaacagctcattaacaaataaataagtgtaatgtatggtaggtaccacgaagcaacataaagctgggaagaaaga s canFam2.chr35 29323420 119 + 29542582 caacaaagagaatgaagcagatggcctcatgaga--tttacattctaatggggaaaaca-------aagaaataaaaatgtgaaatgtatgacaggtcccat-aagccacaggaagctggaaggatgga a score=5992 s hg19.chr6_ssto_hap7 1390078 314 + 4928567 CCCATGTGCCTCTGTGTCTTGGTCCACATGATAGACTCTCCCTCCCTCCCTTCCTTCCTCTCCTCTGGTGACCAGTAGCTAAAACATCACTGGCACGCTGCTGGCATC-----------CAGCCTGCCAATTAGTTCAGGAGCCACTCCCTCTGACTGCCTCCTGAGCCTCAGATGTTACCTCCCCTGTCTCCCAAACACACCCCTCCAGCTCTGTCCGGCCTGCCCTGAATCTCTGGAAGGAAAACTTGCCCTGGGACCTGCCTTGGACTCTCTGGTTCCCCTCATCCAGCCCCTCCCTGCGCAGAACATGGCATCTCGTGCCC s canFam2.chr35 29324488 248 + 29542582 CCCACGTACCCCTGCGTCGGG------------------CTTTCCCTCCCGTCCCTCTTCTTCCCGGGTGACCTGGCGCCCAAACATCCCCGGCGTGCGGCTGGCATCCGGCGGGCGCACAGCCTGCCCATTAGTGCGGGAgccgcgcc--------------------------------------------------cgcgcccccggcgccctccg------cccgcgTGTCTGAGAGAGAAGCTGGccc--gaccccgacccggactccgtggctgccgcc-ccgagcttccccccgcacccggcctggcctcgtgcgccc a score=5649 s hg19.chr6_ssto_hap7 1391353 363 + 4928567 GTGGCATATTACATAGAAAAATGAGATTAGACATTTAG-AAGTTGAGGattctcatcccgcaaacacttatgggggcactttttatgtgccaggcaacatgctaagcactgaagatactaagacgccctgctttcaaaagactgaccttctggttaaggagTGATATGAGT----GGTGCAAACCAGGTGGGGGGCGGGGCTGCCCATAGGCTGAGGG---CTCCTCTGGGAGAGGGCAGCTTAGGGAAGCTTTTACAGCGGATGTCTGGGAAGAAGGGAACCACTTCCCCAGTGGG-------TGGTGGAAGGGGATAGCAGAGGGCATTTCAGGGAAAAGCAAGCAAGCAGAGTGTGTGGGAGAGCTCCAAGGAGT s canFam2.chr35 29324808 332 + 29542582 GTGGCACGTGAAGTAGAAGAGAGGGATTGTGTTTTTAGGAAGCTGGAGGTTTTTATCCAGCAGACCCGTAGGGGG---------------TAGGCGACGAGCCAAGCCCCGAGGATGCTGAAACGGGAGGACCGCACTCAGCCGGGCTTCCTACTGGGGGGCG-TGTGAGCCCACAGCCCACACTGGCCGGGAGTC--------CCAGAGGGCGGAGGACCCTCTTCCGGGGGAAG-----------------TGACAAGTGTAGTCTTTAGGGAAGGGAAGTATTTCCGCGGTGGAGCAGGCCCGCAGGACAGGGCTTG-AGAGGGTATTG-AGGGGAGAGCCAGCCCACAG---GTGTGGGAGAGCTCCAGGGAGC a score=11234 s hg19.chr6_ssto_hap7 1392038 909 + 4928567 GGGTGTTTCTTCATTATGTTGCGGTGATGGAAACTTAAATGAGATAAGGATATATTTGAGTCTTCCTATATGCCAGATGGCATGCAAAATGTTTTTATAtacattatgtaattgaattcatgtaacagtgaaaaatagtgaagatgacctatttgggttgacatgagaagatctataagatc-gtggttaaaagaaaaagtcagtgcagaa-cattatgtaCTATAAATTATGACCCATAGTAAAGAAACACATACAGGGGAAGGGTTTTGGTCAGAGGGAGTACAGAGCC----AGGGCAGCCAAGAGAAGGAGGTGTGTCTGAGCCTGGTGCAGGCTGCG----TGCCTAGGGCTGGCACTGAGAGGGACATGGAGCTTGTCATACTGAGGGCATAACTCAATCCTGTTACACTAGGCAAGTCTCAGAGAATTTTCAAGTGGAAGTGAAACACACTCTGGTGACACAGGTTGTAGAGATTGTTCTGTCTGCAGGTGGATAGATTGGAGGCAGGAGGAGAGCAGTCAGGTAGGAGAGATCCCGAGGGGTGGACAAGC--CTGGCCCCTGGAAACAGAGTCGGGGGAGAGGAAGCAAGGGTGAGAAACTGGGCTGAGGAAATGAGTGGGTGACAGATCTTCACATGGCTGGTAGGGGGAAAAAAAAGGAACACAGAACACAATTAGATTATTTTCAGGattttcatcgcagttatatatgcaaataaaaagttaaacaagttgatgagttaattttttaaaatggcagccctcacccccatctccactactttcaactcttt-tagctgttttggtg--ttcaccttcacatctgtaaatacaaggattatattattactatttgctcttctaattttaggcattatctattattgatttgctgttatcaaagatatagctttt s canFam2.chr35 29325215 723 + 29542582 GGCGGTTTCACCGTGATGTTGGAATAGTAGGA-TTAAAGTGCAGTCAACAAA---------CTTGCCCCGTGCCCGCCGA-AGGCAAAGTGCTTTTACAGATGTCACCGAGGTTAATTC--------------------------------------------------------TAAGACCCACGTTTAAAAGAAAAAGCAGGTGCAGAAGTATTTTGTGCTATGAGCTGTGATCCATATTAAAGAAACACAT----GGGCAGGGTTTTG-TTAGCGGGAACAAGGGGTGTCTGAAGGCAGCTCAGTGAGCTAGGGATCCCCG-GCCTGGTG-AGGATGGGGTCCTGACTGGGGCTGGGACTGACACCAACGTG-------CCAT---------------CAACCTTGCTCT--CAGGCCAATCCCAGAGAGCTCCTAGTGGGAAG----AAACAGTCTGATTAAACTTGTTCCAGGGGTGGTCCCGACTGTGGG--------------------GGAAGCCAGT-----------------GAGGGCTGGGCCACCGGCTGGGCCATGGGAA---------AGGAGAGGAGG---------------------AGAAAAGGAGTGAGTGGGAAG------CACGGCTGATGGG--------ACAGAAACTCA-AACAGAAGTAATTT---TTCAGGatttgaatc--agttatacatgctcatagaaagtcaaataattag----gttaatgagagaaactagcagctc-cacccccaccctcaccaccttgggtgctccgtggttttgcttgtggctgtgcctgcaaagctgggaacaccaaggtt----tgttactgcatactcctgcgatcgtaggcatcacctgtt---gattaacttttatcaaaaatacagctttt a score=4958 s hg19.chr6_ssto_hap7 1392947 222 + 4928567 tcttgtaaccacaacctcacttgatcccacaaacacatatcctcactattcccaCTGTCCCTGGTTTATAGCTATTTCAAATacacacacacacacacacacacacacacacacacacacaTTTCTATGTGTATAAAACACAGATATGTAAATACACACAAACATGTCCTGAAGGATCAAATCAAACTAGGATTCAGGAAGATCATAGCTAAAGAAGACTTT s canFam2.chr35 29326114 208 + 29542582 ttttttcaccaccatctc--ttggtc--ataaataggccccttcaccctccgcactatactcattttatagctatttca--tgaGTGCTTGTGCACACACATTCACGCACATGTATCTCCCTCCATATGTG-------CACAGCTAGTTGGGTAGATGCAGAGACGTCCTGAGGTACCACGTCAGAGCAGGTTCCCGGG-GACTGTGGCTGAGAGAGACTTT a score=17723 s hg19.chr6_ssto_hap7 1393622 661 + 4928567 TAATGAAGGCAGGAGGCAGCAACT--------TCAGGGCTGTCTGATTTGAAGGAAATATTAAAGCCTTTAT--CAGGAAAG----------GGGAATCACTAACAGTC--AGACAGAAGCACCAGA------------------------------------------------------------------CTGAAGGAAAAAAGATCACAGCCCCATATCCTTAGAGAGTATC--AGAGACCTCAGATGCCAGGCATCTGCCATGCTGTTGATTTACTCTGCAGTGAGTCACTGGATCCTTGAAACTGGGGGCAAGGGTGAGATCATTACCCCAGAAGGCAGGGAGCAGAGACAACAAGGCCCTTGGGGTCCAGGCAGCTGAACCCGTCTGGTCAGAGGCCACTGTCACAAAACCAACAAAGAATTCATATCTAATAGGTTTTCCTCAGGGCTCAGATGAGTAGGTTTGGGAGTTACTGGGAGGCTGTGATACCAGGCAGGATGACAAACAAAAACAGTC-AGCCAAGAAAACAAGCTTCAGAGTGTTTGCCCTGGGAGAACAATGGATGTCCGGGTAG---------------------AGCCAAAGCCACT---GGC------TCCTCCCTCCCCACAACTCAGAGCCACCAGGGACCTGGGCCACGTGTCCCTTTCCATGACCAT--------------GGGGTGTGTGAC-------TGCGGGAGGCTGAAAGTGTCAGCACTGTGA---------------CCTGGAAATATATGCCTGGATTGGGGAGGTGGACACCTTGGAAATAAAC s canFam2.chr35 29326500 779 + 29542582 tcttgaagccagggaagcgcaactggcaaaaaccaggtttgaaTGGGCTGGAAGAGGCAGGAGGGGTTCTGGGGCAGGAAAGCCCGCCCAGGGGGTGGGGTCAGGAGCCCGGGGCGGAAGCAGCAGGGATGTGGCCTCTGGCTGGGAGTATAGTGCTCGGTGAGCGCCCCCCGAGGCAGTCTCCTGAGCTGCTCTGTGGGTGGAAAGGTCATGGCCCAGTATCCTCAG-GAGCATCCAGGAGAACTCAGGTGCCAGGCATCTGC---------------------ACTGAGTCACCGGATCCCAGAAACTGA---------TGAGATCATCACCCGAACAGGCAGGGAGCAGAGACAACAAGGCCCTTGGG-TCCAGGGAGCCAAACCTGTCTGGTCAGAGGCCACTGTCACAGAACCAACCAAGAATACGTATCTAATAGGTTTTCCTCAGGCCTCAAATGAGTAGGTATGGGAGTCACTGGGAGGCTATG-TACCAGGGAGGATGACAGACAAACACAACCTGGCCTGGGCAAGTGGCTGC--AGTTTCTGCCCTGGGAGAATGG-GGGCGTCTGGGCAGCAGAAGCCGCGAAGAGCTTGCAGTCAAGGCCACCCAGGGCAGCCAGCCCTCTCTAATCATGACTCAGCTTCCCCA-AGCCCTGGGTCACCCA-CCCCCTCCAGGGTCACCCGCCCCCTCTATATGGGCACCTGACCCCTCTATGTGGGCATCTGCCCCCTCCAGGACCGTGAGAACTGAGCATGAGGCTGGGGGCTGTATGGCTGGGTCAGGG-GTCGAACACTTGGGACACTGAC a score=2402 s hg19.chr6_ssto_hap7 1394622 187 + 4928567 AGAAAAGTTTTTTGCATTGAACTGGATTCTGCACATATCTATACACATGCTCCAATCCCACTAATTCATCTTTTTTCCCAATGCCCAACCTAAACACTGAgagaaaaaaaaagagcag-------cctctgacattcagaagttgg---------cctaacagagctaaaccatgttattcacctagtaggcataaactatat s canFam2.chr35 29327287 149 + 29542582 GGAAAGG--TTTTACATTGAAC------------------AGACAGTCGCCCCAATTCC----------------------------------CCACTGAGAAAGAACAGAAGAGCAGCCTCTGACCTCTGACATTCAGAAGCTGGCCCTACAACCCTGacaagcccaaatcctgtcaccatgctggggaggaagacctttgt a score=8445 s hg19.chr6_ssto_hap7 1395149 356 + 4928567 gttttttcctaacactcttattaaaatgtcccacactccccatggggtgcattctccattgctgcaaggagtaataaacccagcatgtttaatgacagttatgttcctggggggtctttggctggaaaacacGGGTAAC----AGTGTTCTTTGCTTCCTTCTTAACTCTCTGGGATCTACATTGAAGACCTGGCCCCATGTTGTGTGGGAGAAGCTGGTACAAAGGCAGGAGGTGCTCTTAGA-------AAGGACAAAACCAGTAatgcattcactcaacaaatatttatggagcacccacacatgccacagactgttctaggtaccaaggacaatagacaaataaagcaggatccctgaatttt s canFam2.chr35 29327815 306 + 29542582 gttttttcc---aactcttactgcgatgccacccagttct----gtgtgcactctctcct--tacgaacagtaataaaccccacctg-----------------tCTCTGGGGCTCTGCGGCCAGAGGACACTGGTACCACCTAGTGTTCTTTTCTTCATTCTTATCCCT-----------------------GACCCAGGCTGTGTGGGTAAGGATGGTACCA-------AGGTACTGTCAGAGGAACAGAGGGACAGAACCAGTGACACCttcacccagcaaatattcactggccacccatgtctgccac--actgaaatggatgcagaggaa---aggcaaatgcagtgggATCCCTGATTTCt a score=4956 s hg19.chr6_ssto_hap7 1395506 420 + 4928567 aggaagctctcagtt-ggggtagaggtgagaaacacacataaacagatcgtcttgatt-gtggagattagtgcagtgatcaaagtatgccctggggactgctatgtgcttatagatgtggtgcctaaaccagtgtcg----------gagaggagtgggggatcaagaaaggctttcagggaaggaggcgtttgaggccctggaaggctgaggacaagctaagaagaaggaacaatgaaagcgggtcagggagatgtaaacaatgtgGTGAGTGGGGAATTTTAGG--CAATTTGGCCTTTCTGGAGTGAAAAATGGGAAGCAGG-TGGGGGCAGGGGTTAGGCTGAAGGCAGGCCAACGTGCAGTTCAGGCTTTATCCTTTAGAGAAGGGAGGCATTATTGAAAGTCC------------AACAAGTTCTAACATGACCAGATTAT s canFam2.chr35 29328305 356 + 29542582 GGGAAGCTCTTAGTTGGGGGTGGGAGTGGGAAGGACAC--AAACAGGTGGTTATGATTCCTGGAGGTGAGCATGGGGATTGAGGTGTGC-----GGGCTGCTCTACACCCACGAAGGAAGTGCCT----CTGTGCTGTGCGCTCTGTGACACTGATGGGATGTCAGGAGGGACTTT-------------------------------CTGGGGACAGTCTCACAAGAAGGAAC-------------------------AACAGCATGGGGAGAGGTGATGCTCATGTACAACT-------------GAGAAAAACTGGAAGCTGGCTGGGAGCA---GTTGCGCAGAGAG-------GTATGGAGTTTGTGGTTTATACTATAGCAAATGTA-GCATCACGGAAAGCCCGTTCAAAGTTCAGTTAAGTCCTGATGTGATTGGATTAt a score=2319 s hg19.chr6_ssto_hap7 1395926 46 + 4928567 ATTTTTAGAA------------------ATCATTTGAatatctgcaacttactttaaaatgcat s canFam2.chr35 29329460 64 + 29542582 ATTTTTAAAAGGTTTAAAAAATCAAATGATTTTTTGATTGTCTGCAACTGACTTTAAAATGCAT a score=8981 s hg19.chr6_ssto_hap7 1395972 404 + 4928567 aaaattataagatgga----tagaaggatgaaggaatgggtcgatggaaacatatttgataaagcaagtacagtaaaatgctaatgagaaaatgtaggtggta-atatttggatggtcactgtaaaattcattcaactcttctgtcagaagattttcaaaataaaattttagaaaaGCATAGACTTTGGCCTGGGTAATGGAAGATGGATTGGGCAGAATAAGTCTGGAGGCAGGGAAATGAGAAAGGCAGCT---GTCATAATCCAGGTGAGGG-----CTGATCTAGACAGTGCTAGGAGGAA--------------------------------GATGGGTGGAGTCCTGTGGTAGGCGCTAACATCAAGGAGGTTGGGGCCTCAAGGACTGTAAGAATGAGGAAGAAGAAAGAGTTGAAGATAACACCTAGGT---TGGGTGACTGTG s canFam2.chr35 29329716 420 + 29542582 AAAATCATAAGATGGACTGGTGAATGGAGAAAGGGAAGGACAGGTAGGAACATG--TGATACGGCAATTATGGTCAAATAGAAGTGGTCAAACCCAGGTGATAGGTTTGTGTGTGGTCACTATAAAATCCTGTCTAGTCTTCT----GAGAATTTTCATAAGAAAATGCTGGGGAAAAGT-GATTTTGGCTTCAGTCACAGAGGATGGACTG-----------------GGCCGGGGGATGTGGAAGGCAGCTATGATCCTGACACAGGTGAGAGCAGGCCTGCTATGGGCTGTGGCAGGAGGGATGATGGCCCTGGGCCAGATGTCTGGAGGGTGGGGTGGGTGGAG-CCTGAGGTAGGGGCCCCCTCCC---AGCTTGGGACCCCAA-GCTTGTCACAGTGAGGAGGAAG---GGGCTGAGGACAGCCCCCACACATGGGAGTGACCGTG a score=7652 s hg19.chr6_ssto_hap7 1397524 290 + 4928567 taagaggagggaaattttgacaca--gacacatgggagacggccatgtgaaaatgctgtcagagattggagtgaggcatctacaagccaaagaatgccacggattgccagcaaacaccaggagctagaagaggcaatgaagcattttttcctagagcctttggagagagcatggctctgctgacaccttgacttcagacttcttgcttccaaaactgtaagagaatgtg-----tcattgtttcaagccacacagtctatggtgatgtgttatggaagccctaggaaactaatataG s canFam2.chr35 29330204 280 + 29542582 tatgaggagaccaactcagacacatagacacagagtagaaggctatgtgaaggtgcaggtggagactggcctgatgtaccaaccagcctaggaacacccagaattgc-agtaagcaccaggaaccagaggaggcagggaaaggttcctggccagaccctttggagggagc-----tacgcaaatgtcattgcatccagcttcctccctt-----------gagggtgtgagcttctcctgtctctagcagctggtttgaagcagccttgttgtagcagccctaggaaaccaatacaG a score=2169 s hg19.chr6_ssto_hap7 1397873 79 + 4928567 GAAATACCGTGGAAA-GTTACTATTTGTTATAGCCATTTTATCATATATTTTATGAG-ATTTTATCTTTTCAAGTCAACTT s canFam2.chr35 29330508 81 + 29542582 GCAGCACCACAGAAAAGTTATTAATTTTTATAACTGTTCTGTTGCACATTTCAGGGGGATCTTCTACCTTCAAGATGGCTT a score=12841 s hg19.chr6_ssto_hap7 1397968 867 + 4928567 TGAAAGACCTGAGTTTGAACATTCATAccatatttggaatatgggaatgtaaccatacctaatttaagcagttgtga-gaagcaaatggaataatgtatctgaatccatttaataaactgtTCAACATTGTAAACATGCTGTTAGTAGTATCATAACTGTGTGAAGAGGCAGAAAACACTTTGGACTGGGGGATGGAAATCTTGGCCAGGGTTC--AGTATTCACTTGACTTCCCGGCCATAACATCGAATGAATGGCCAGGACTCTCTTTGAGTAAATGAGCTTCTGAGAGGCTCCTAAAGAGGCGACCCCCATCCCTCACGGCTGAGAAGAGTGTGATCATCGTTTAAGGTTAAGGTCCAGGTTGGAAGACCTCCCCAAATTTAAACCTTGCTACAAAGTATTCTTTCATTTACTTTGAACCCTTCCTTCATTTACATCCCTTTAGGAACCAGGCCCTGTAGTGCTCAAGGAGGGTGGGAGAGTGAAACGAAAAGGAGTGAGATGCTGCTTCTGTTCTCGAGGACT--TCACAGTCAACTTGCGGTAAGTGCTGCAGGGAGATGGCTGTAGTGGCTTTGGGAGTGTGCACACTTTTccaacagaaagtaccaggaaccctgcctggggaaggcttcctggaggaggtgaggtggagctggtccacgaaaattgagtgggatttccaagACATCAGTCTTTCGCGGGAAAAGAGAAATTAGGGCATGGTTTTAATTTAGTAAATATTTAT---TAATCAAGTACCCCATTCTAGGGTCCGTGCTAAGTGTCTGGGGTTGGTAGAGTCAGGAAGTATAAAATCAACTTAAGACATTTGGGAAAGATCTCCCTTTGTAGTAAGGAAGTTGAATCTG s canFam2.chr35 29330781 702 + 29542582 TAAGAGATCTGATTTGGAGCATCAGTGTCCTATCCGGAGTTTCGGAATGCAGCCATTCCTAATTCAAGAGGAGGTGGTGAGGTCAGTAGAAGAGTGTCTAGGAAACTATTTGGGGGA------------------------------------GAGCTG---GGATCTGCAGACACCACCCTGGACTGGAGAGTGTACATGTAGGCCCTTGTTCTTACCAACCACCTGACCTCCCACTCA--------------------GGATCCTCTCCAGATCTGACAGCTTCAGGAAAGCTAATGAGTGGGCCCCGGCGGGTGCTCTGGGTGGAAGAGAGGGTGCTCAGAGTTGTTAGTAGTGGACCAGGGTG-------TCCCCAGATTGAAACTTGACCAC--------------------------------------------------TGGGCCAGGTGCTCTGG------AGGAGGCTAGG-GAGGAAACC--ACAGGAGGAAAGCCCTGCTTCTGCCT----GGGCTAGTCTCAGCCT-CCTGTGGGCAGTGCTCACAGGAGCTGG--------------AGGGTGTGGGCCCTCCTC--ACAGGAGTAGCTGGGAAGCCTGCTTGGGGAAG-CGTCCTGGAGGAGATGTGCTGAAGCCAGCCCACTGAATTTGAGTGAGATCTCTAAGGCATCACTGCTTTGTGGGAAA-GAGACATGCTGGGATGGCTTCAATGTAGTAAATATTTATAGTTGACCA-----CCCATCCTAGAGTCTGTGCCAGGGGTCAGGGGTCAAGAGAG------GGGACACCATCCA--------------GGAACTTCTCCGTCTGCACTGAGGAAACTAAATCTG a score=-872 s hg19.chr6_ssto_hap7 1399065 313 + 4928567 GGATGGGGGAGCCTGGCCAGGGCTGACTGAGCGCCCCTGGAATCCGTGCTCCGGGCGTTGGCTCACTCCCGCCCCGACACCTGGGCCCGCCCTCCCGCTGCGCAGCCACGCGCCGGGCAGCAGCGTGGGCTGGCGGGCGACTCC-----CCACGCCTCCTGCAACACCGCCCTCTCCCTACCGGAGCGAGGAGGCAGGAAAAGCCTAGAGACGCCTGGTCCCATCCGCCTACCCAGTCCCCAGCCGGCCTGAAGGGAGGAAGAGGAAGGAACCCATAATCATCCCAAACTGGCGCAAATGGTGGGTTTTACTGTCCAG s canFam2.chr35 29331573 196 + 29542582 GGGTGGGGGGGCACGTTCTG-----------------CTAAACCTGAGCTCTGGGGGTGGGCTCTC-----------CACAAGGGACCCTCACCCC--TGCGGGACCCC--------CACCAGCCT-------CAGGCCCCTCCAATTCCCGGGTCTCC--------CACCCTCAC--------------------AGGAACCCCCACCTCCGCCAGGTCCC-TCTGCCTCTGCATTTACC-------------------------------------CCACCTCCCACCAG-----------GGTCCTGCTGTCCAG a score=2745 s hg19.chr6_ssto_hap7 1399478 81 + 4928567 CCTCACATGGCAACACTAGGAATGATCAAGACTTTTGTTGCGGGTAGTGGTGATGTGGGTT-TGAGAGGAGGATGCATCTGG s canFam2.chr35 29331821 79 + 29542582 CCTTCCACAGCGCCACAGTGAATGATGAAGATTTTTGCTGTGGGTGGTGGCGA---GGGTTATGACCTGAGATTACTTTTGG a score=3421 s hg19.chr6_ssto_hap7 1399580 295 + 4928567 CTGAGTATTATGAAGAACTAGAA--AAGTTTTGCGTATGTC-GGTTTTCAGGATGGGGTTCAGATGGGTCAAAGCCCTGTGCAGGTCCACGGGGGCTGCAGGAGGTAAAATGGAGGAGGAGACAGGCGGACAAGCTGGGGTCAGTGGTCCACTCCCCTGTGTCTGTC--TTAACCGAGATGCAGCTGGATGCTTGCACGTGGCagctttttcaaccacctgttgatagacgttcgtttccagtcttatc----ctgttaccaactgtgctgcaatgaacagccttgtgtatagcctttt---------------------------------------------------------------agtgt s canFam2.chr35 29335653 320 + 29542582 CTGAGTGGCCTGGAGAGCTGGTGTCCAGGGTCGTGTGTGTCTGATAGGAAGGATGAGATCCGGATGGACCGTGGCTGCATTCTGGGTCCC-------------------ACGGGGGAGGAGACAGG---GCAGGCTGGGCTC-------CAGTCCATCTGATCCATCCATCAAGCAGGATGCAGCCGGATGCTTTGCCAGGGCAGTGTCTTCAACCA------------------TAACCAGTCTGGTCAGTCCTGTTATAAGCTGTGCTGCCATCAACAGCCTCCTGCAGAGTCTTTTCACACATTTCAGGTTTGCTTGCTTGCTTGCTTtatgtatgtatgtatgtatgtGACACCGAGAGGTGT a score=22092 s hg19.chr6_ssto_hap7 1399875 1134 + 4928567 atttgagcctttcttttCGACCCAGGCATATTGTAAGGAGAGAGGAACTGAGATAGAAGGAATATTTAAAGCAGGGTCAGAGAAATCAGGACTGGATCAGGAGGAAGCCCGAAGGGTGTAACCTTCCCATAGGGCTGCTGGAAGCCTAGCTTCAACCCTTCCAGCTGCAGCACATCCCAAACTGGGGCGAGAAGCGAGTGAGGAGGAGATGCAGAGGAAGGCAAAG-AACAACTCTAGCGACCCAGGGTGATCCGGGTGCCGGAAAACAGAAGCTGGAAAAAGGAGATCTGCCCCGGAAAGGAGGCATGGAAAGTGTAGATGTGGGTCCTCGAGGTGGCGTCGTAGAAGACTACCTCTCCGCCCTAGTAATCCAAGCGGACGCCCACTTTGTTCGGACAGATCGGGAGATCCTCCCGGGAACCGCTCTCGATGAGCGCCTGGCACTGGGAGCCGCTGCTGTGCAGCTCCACGAAGCCGGTCAAGGGCTCCACCTCCAGGAAGCCCCGCCTGGGAACCAGCTCCAAGGCCAAGCCCGGCACGCAGGCCCCGCCCCCGGGCCCTTGGAGCTCCGCCTCCCAGGCGCCGCGGCCGGAGCAAAGGCCCAGCGAGCCC--AGCACTCAGCGGAACCTGTA---GAAGCGTCGGGGGTTGCCCCGCTTCTGCGAACCGCCCTGGGATGCGAGGTTCAGCGTCACTATCTCATCCTGGGAAAGGATGAGATCCGGGTGGGCCGAGGCTGCGTCCAGTGTCACAGGGGCTGTGTGAAGATGAGGAGAAAGAGGTGGCCAACCCCGGGTCAAGTTGTCCAAACCCCCTACCTTCCTCTGATACCCCCGTCCCACCACCCGCCCCGCTCGATGCCGCCAGAGAGGCTTTCTCTTCCCAGTCACAGCCTTTGTGGTCCCCAGAGAAGTCTTAGGCCCGGCACCGCCTCCTCCTCCTCAAAGTTAATCCCTAAATTTCAC----AATGTGTTGTTCTGTGGGCGCAG-AGAGAAGTTCTTCATTGGTGGTGGTGGTGAGAT-CATTTCAACACCCGAAGATGAG--ACCATCTCTTCCTTGTCCATTTCCCGTGGCCCCTAATTCCCATGTCTAAGACAAGAATTGAGTCTAGTATAAGAGG-GTCAAGGCTCAGACTTTC s canFam2.chr35 29336085 955 + 29542582 ATTTCAGGCTTTCGTGTGGATACAGGCACACTG----GGGAAAAGGACATTGAAAGAAGGAACATTTAGGGCGGGGTCAGAGATGTCAGGCCTGCCCTGGGCAGCACC----GGAGTGTGATCTTTC-----------TGGAAGCCTAGCTCCAACCCCGCAAGCTGCAGCACACCCCAAAGTGGGGGCGGCACC----GGGGAGGAAGCGGATAGGAAGGTAAAGAAACAGCCCTGGGG--TCAGGACCCTCTGGGGGCTCCAGAAAAAGAGCCCCCAAAA-------------GGGATGGAGGCCCTGACC-CGTGCATGGGGTCGCTCGCGGGGGCGTCGTGGAAGGCCGCCTC-CCGCGCTCGTAGTCC-GGCGGACGCTGGCTCTTCTTGGACGCCCCGGGAGACCCCC-----GACCCCACAAGCTCAG---CCAGCAC------CCACTTCTG----GCT-------GCCCGCCCAGG------CCTCGGGGAGGCCTCG-----------------------AACTCACCA-GCAGCTCCCGCCCCCGGGCCCTCGGAGCCCCGCCTCCCGGGC-TGGAGGCCGGACGAGAGGCAGGGCGAGCCCCGCGCACCTTGCCGGCCCCCCGCGCGCAGCGTCTGCAGGTGC-------CTGTGAGCCGGTCTTGGAG--GGGGTCCGGAGCCGTGTCTTCAGACTGGAGGATGAGGAGGTCCGGGTGAGCCGAGGTCACCTCCAGCGTCCTGGGGGCTGCGGGAGGTTGAGGAG-GAGGGACGGCGACCCCTTG---------------CCTCCCAGCTCCCGCTGG-----------AAGCACCCGCACCGT----------------GTCTTTGTCTTTGCGGTCAC-GCCCTCCTTGTCCCCAGAGAGGTC--AG------------------------------AACCCCTAAAGCTCACCGCGCACGTGCTGTCCTGCGGGTGCAGAAGGGGAG---CTGAGGGGAGGTCCTGGGGAGGTGCATGCTAACA-CCGAAGCCGAGCTGTCTCCTCTTTCTTCCCCTTCTCCTGCAGGCCCTCA--------TCTAAAGCGGGATTTGGGACGAATGTGAGAGATGTCAAGGCTCAGACTTTC a score=11356 s hg19.chr6_ssto_hap7 1404364 682 + 4928567 GGTGGAGCCCCTAGATGGGGAGCTACTTCTGG-CCCCAGCACCCTTCCCCCAGTGTCTTGCAGCCCCAAGACAGCACAAGACAG-CCTGGGGCTAGGTAGTGGGACAAGCGTGGGCAGCTTCCCTGAGAGCCACCAGCCCAGTCATGGGGACTGCTCAGGGGAGACGCGGGGGCCCTCTTAGGAGGGGTCTGCAAACCTAG------AGCATAGGAAACACTGCCTGGGAGCACTTCACCTACAAGGGCCTTTAGCGGCTTCAGGGCCCAGCCACACCCTTCTCCACGTACGTGTTCCAGACCCAGTCACCC-CGAGCAGGGAGAACCAACCCTCATAAT-AAGAACTGTGGAGATTGGACCTGTGGTATAAGTAGACTCCCTACCACCTCCTGTATTTCCTAGGCTTTAATAGGGCCAGGTGGCCATTGTGCCTTCTTCTTTGGGGTAAAAATAAAATAAAAATAAGAGAAAAAAAAAGAAGGAAATAGGGCCAGGTGGGAGTTGGGGGACTGTGTGTGTGTGAGTTTGTGTATGTGAAAGAGGGAAAGAAAAG-----------GGGGATACAGAGTAGAGCACACCAGTC--TCCCCAACTCCAAACCTGATGAAGTGGAAAGGGCTGGG--CTCCTTTATTGAAATTCCAAACTAGAACCAAACTATTCTTGACCTGAAGAGCCTAGAAAGGTGCTGGATCGg s canFam2.chr35 29337491 577 + 29542582 GGTGAGGCCCCTCGATGGAGGGCCTCCTCTGGGCCCCTGCACTCTTCT---AGCACCCTGCTGCTCCAGGAGAGCCCAGGACAGTCCTGGGGAGATGTGGACGGAGAAGCGCAGGCAGGTCGCCTGC-AGCCACCAGCCCTGCCTTGGCAGC------------ACTCAGGAACCCTCCTCTGAGGGGTTCATACATCTGGTGCCTGAACGCAGGAATCATGGCTGGGGAGTACTTTTCCTATGGGGTTCAGTTACCTCCCCA----CCAGCTAC-----CCTCCACTTTTACTCCCCCCCACCTGCAACCCTCCACCAGGCAGCAGCAACCCTCAGACTTGGGAACTGGGGAGATTGGACCAGTGGCATAGATAGACCATTTGGGACCCTATGCATC---------------------------------------------------------------------------------------------ACCAGGTGGGAGGAAGGGGTC-----ATGTTCAAGTGTG-------GAAGGGGAGACAGAACAGCTGAGCCCATCGGCATCACAGGCTACACCACGGTAGTCCCTCTCCCACTCCCAAATCCACCCCATGCTAAAGGCTAGGGACCCCGTTGTTCAAATTCTGAACTGGAACCAGACTATTTTACAGCTGAAGTGACTGTACAGTTGCTGGATCAG a score=26982 s hg19.chr6_ssto_hap7 1405372 1131 + 4928567 GAGATCATGCCCAGTGGGGTGGGAGGAGCTAGACAAAGCAGAGCAGTTAGTGGACAAAAGAAAAGCTCAGACAACAAAATTAAGAATAAAACAAAACATGCTTTCCTGTTTATGTCTGCCGAGTGGAGATTCCCGGCTGAATGGGTGGAGATCTTGGGGCATTGCCCTGGTCCTCCTTTTCTGTAGTCCCAAGGGGAAGTGTTTGTGTATGGGGGGCTGGGGGTTGGGGTGGGGGAGGTGGGTGTGGAACTCCAGGTGATAATTTCAG--AAGATTCCATCTAGCTGTCTTTATGCCCACCTTAGACCAACACAGTCTTCACATTAAGGGGAGTCCTTACAAATACTAACCCTTCTTCCTAGTTGCAAACACAGAAAGGTTTATGAAAAA---TATCTGGCCGAACATCTAAAACCCAAGTCATCCACTACTGTTCTGCT-GATTTCTGTTTCCCTGTAAGGCTGGAAGAGGTTTCTCCCCAGAATGTCACTGATTTTGAATTTATTTTCTCTTCTTCTGTAGGCAGGAGGAGACA-----CCAGTGTGCACCAGAGAAGGAGAAGTCA-------GAGATGACA--GTCCCTGCCTGAGGCCATCTCTGGTCCACCAGACAACTCATCACCAACTTCCCAACAGCCACTGCTCTAGGCCAGGT-GTCCACATGGGGAATAGGTCCAGGCCCTCTATGGCTCTCGCAGGAGTCAGGGAGGCAGATAAATAACATATCACGAAGACAGAATATAAGAAATGCCTGGGAGGAGGCATACTGATGCGTGGAAAGTACTCAGCCAGAAGCCTGGCACTAGAAGGGCCCAGGGATTGT---TGGCATGTATGAGTCACAGTTCCATTTCAGTGGAGTGAGCAGGGAGAGAATCTCCTGGAAGTAGGTGA----ATAGAGAAAATACAGCCTCTTCCTTACCTTTGAATTTTTTCAGGCTCCCTG---TGATGGAGTCGTGTCTTGATTTTGCTTCACTGAGTTTTTTCTCCAGTTCTAGAGGAACAGGGGTTGGGTTGAGAAACT--GAAACTCTTCACTTCTAGGAAGATGTGGTTGAGCTGGTTGGTGAGATCAGGGGATGAGGTGTGGGAGAAGGAGGATCTGAGATATGGGGTTGAGAAATGAGGGGATGAAGACCTGGGGGTAG s canFam2.chr35 29338070 946 + 29542582 GAGATGACACGGAGTGGGATGGTAG-AGCCAGACCAGGCACAGCA-TTGGTG---------------CAAACAACAAAATTGAGAACAGAAGAAAACATCCTTCCCTG-----------------GAGACTCCTGGCTGGATCGGGG--------------------------TCTTCTTCCATAGGCTCGCGGGA----------------------GGGGTGCAGGGAAGGGTACATGGGGGGGGGCATCC-TCTGATATTCCCAGGGAGAAAACCATCCAGCTGACTTG--GCTCCGCTTAGACAAACA--GCTTCTGCAGTGAAGGGAGTCCTCACAAATATGGAACCATCTTCCTGGTTGCAAACCCAGACCCATTTTTCAAAAACAATATCGGACCAAATATCTAAAGCCCAAGATGTCCCCTTCTGTTCTCCTTGATTTCTGCTTTCCTGTGAGGCTGGAAGATGGATTTCCCCGGAATGTCATTGATTTTTAATCTATTTTCCCTTTTTCTGAAGTTAGGAATGGACAGAGCTCCAGTGTGAACCAGGGAAGGAGAAGCCACTTGCTGGAGATGACATGGTCCCTGCCTGAG---------GGCCCCACAGGCA--------------TCTGAGCGTCCACCCCGCTGAGCCACTTGGTCCATTCAGGG----------GTGCCTCTGTGGCTCTTGCAGGGGTCATGCAGGCAGAGA------ACGTGATGGAGAAGGAACATA--------------------------------GGCAAGTCCTCAGCAGAGAACCTGACCTCCACAGGGCCCTGGGGTTGTTACTGGCATGCAGGAATCA---GTCTAGTGCTGTGGGGT--TCCAGAAGAG--TCCCCTGGCGGTAGGTGGTGACCTGGAG-----ACAGTATTTGCCTGACCTTTGG-----TCCAGGTTCTCTGTAATGATGGAGTCAGGTTTTGA--TTGTTTCACTGAG-TTTTTCTCCAGGCTTCAGGGAACAGGGGATGGGCTGTGGAGTGAAAAAACCCTTCGCCTCCAGGAAG--GTGGCTGAGCTGGAGGGTGAGAT----------------GGGGGAGGGGGCGCTGTGCCAGGGAGACG----------------------GGGGGTGG a score=5960 s hg19.chr6_ssto_hap7 1406827 480 + 4928567 GTGAGCTGGGAGTCAGAAAGTCagggctagggatatggggcaggagtgaggtagggcatagggagatatggaaatgaagatgggagatggagacagagaggagggaaaaaaacagggtcagggagacagagtaggggaCCCAGGAGCTATTCAGTTGAGCAAGGGGGCATTCAGGAAATAGTAGAATCTGTGCTGAAGAAGGAGGAAGGCT------GAGAAAACAGCTGGTTTCTTTAACAACCAA-CCACTTGCTAATATGGTCGGCATAGGCATTCCCCGGCTGCAGCCTAAATGTATGAATGCAGAGTTAGAGGTGGGTGGGTATTTCTGAGAGAGGAATGTTGACTGCATTTGGATATACGCTGAGAATTGTGTGTGGATGAATCAGTAGGCAAAATACATTTGGGGTGGCCCATCATACCTGCACAAGACGACTTTGATATCCTAGAAGAGAAAGAGAAACAGCACAGCCTCAGCACTTGG s canFam2.chr35 29339016 373 + 29542582 GTGAGACGG--------------GGGTTGGGGAGATGGGG---------GCCAGGGCCCTGGCAGATGTGGACATGGAAATACAAGATGT-GACAGAGAGGAGAGGAA------------------------AGGGGGCCCTGGAGCTGTCTG--TGGGACAGGGGTCCTGCAGGA---------------GCTGCAACACACGGGAAGCTGGTACAGAGGAGACAACTCTGCTCTTTAGCAATGAACCCACCTGCTTTCATG-------------CTCCCCTGAGCCGACCTGGGTATCTGACTGCAGAGTCA-----GTGTGGGAATTTGTGGGTGAGG-GTATGGAGTGTGTGCACATATGCATTGGGA--------TGAGTGGATCTGGAGGGAAA----------GGATGCTCATCCT-CCTGCCCA-----ACGCTGACTTCCTGGGAGGAAACGGGA------GCACCCTCAGAAGATGG a score=2136 s hg19.chr6_ssto_hap7 1408660 50 + 4928567 GGGACTCACCTCCAGCAGCTGCCTGGGTGGCATGTTCTGCTTGGTCTTCA s canFam2.chr35 29372884 50 + 29542582 GGGGCTCACCGTCAGCAGCTCCCTGGCGGGCCTCCCCAGCTTCTCCTCCA a score=2558 s hg19.chr6_ssto_hap7 1408777 194 + 4928567 TTCCGTTCCCTCATGAC----CCAGCCAGTAAATCCGT----GATAGCAGGAAATTCTTCTCCTCCTCTAGGACTTGATGCAGGAGTTCAAATTCTGTGAGGATCCTTTGCTTCTCATGTTCTACCTGGTCCTAAGAAACAGGGACAGGCAGAGGGTGAGAGGATG----GCCTCGAAGGTCCTTCTAGCCCACTTTATTCAGCCA s canFam2.chr35 29372993 190 + 29542582 TCCCGTTGCTTCAGGATGTCGCCATCCAGCTTCTCCAGCTCAGCTAAAAGGACGCTCTGCTGCTCCTCCAGGAACTGACTCAGATGTGCAAACTCGAAAATCACTTTTTGTCTTTTGGTGGCCACCTGGCACT--------GGGCAGGGTGGAGGCCAGGAGGGAGTTATGCCT--------CCTCCTCCCCCCTTCCTTCTGCCA a score=17606 s hg19.chr6_ssto_hap7 1409867 2189 + 4928567 CCGTGAAGACATCGACCCTGTGTACACCTTGTGCCTTCACTTGTACTGTCTCCTTCTCCTTTTGCTGCAA----------------GACTTGGATCTGCTCTTGAATCTGCCCCTGCGGAAAGAGGGCCGTTTGGACAGGCTGTGCCTGGAGATTT-CTGGCCTCATAAAATCCTCCTGGTCTCTTAGGAGAGCTGGTGACACTCTC-CAGGTGAGTCCTTGTGTAATTATTAAGGACTCGCCTTTCTCAAGCTGGCGGGGAAAGGGGTTGCTGAGAAGGGAGAAATCTGGAGCCTAAGTGACCTAAATGACCAGAACATAGTTATTTATGACTAACTAGGACTAtggatggtgc--tttggaattatcaaagaactacaaacttcccttcatctgtcctaccaacaact-ttaagagagttgttttgtttttgccatttgaaaggtgaggtacctgaggctcagagaggtaaagtgattccttgcaggttgtacagtaaactcacaagactgggcttgagcccaaaccttctgagtcaaattttcacatcctttccattCTCCATTGCA-CCTTGATTTAGAGAGTCAGCAGTTCCCCAGACTCAGCTCTTTGAACCCACTGTGCCTGACTGCGAGCTGCCCACTCAAGCCCAAGGGGTGGGGGCAATGGGGTGCAAACCCTCAGTGGGAAGGTAGCAGTTTCCAGGGCCTCACTGAACTCCTGGGCTGATGGGGGAACAGGGAAGAAACCTCAAATGCCTACCTGATAATTCTGGGCAGCTTCTTCGATCAAGCTGACATTATGGGATTTGTGGTCCTTGGATTCACGACACACAAAACAGAGGAACTTCCCATCATCCTCGCAGAAATAGTGGAACATCTCCTGGTGCCTCGGGCATGTAGCCTCTTTCCTTTTGGACTGCACCTCAGAGGCTTGTAGAGCTTGGATTTTCTCCACCAGATTCCGCAACAGCGAGTTGAACCTGATTGCGTTCTTCCTTACGGAAGTTTTGCAGAGGGGACATTTGAAAAATCCACATGATGTTTCCCCAATCTGAGTGATGCATTTGAGGCAGAAATTGTGCCCACAGTCGATGGTGACAGGTTTCTGCAGAATGTCCAGGCAGATGGGGCAGATCACTTCCTCTTGCAGTTTGTTCA---------CAAACTGCCCACTGGCCATGACAGAACAACAGGGCTGTTTCAAGACTGTAGGAAGCTGTGCCAAGTCTGTAGGAGCCCCGGAGTCCACTGTGGATACTGTTTCTAGGAAGGGAGAAGGGAGTCAGAGAAAGTGGAGGTCAGAGATTCTGCCAATTAGTTAGAAGAGCAGAGAGAGAGGAAAAGAAGAGGGAGAAAAAAATAAAGAAATGATAGAAAAGCGTAAAATTTAGGATCTAGAAAATATTATAAAGAGAGGAAAACAGATGGGCAGTCCTACCTTGCTACCTCTTGAGAACAAATGGATACTTTGAATGTGTAATAGGCTGCTTATAAAGTGAAATAAGTTGTCCTGAACTTTGGACTAA----AGGTATGTTTGTATGG----TGGTTGACTAAGAT-CAGAATGACCGGGGCACCAAACACCACTTATGGGGCATTTCCCAATCAGCTCTGAGTAGGGAGTGGAGGGGTGGGTGGTGATGCCTACTGAAAGGTCACAGCCAGTTCACTGCAATGCTTTGGGCATCTTGTATGCAAAGTTCAAGCCTCGGTAGAGCATCTGGAAAGTAGGGGAAGGGCAATTCTCTACCTCAGGTGCTTTGGCTCCTCAC----AGAATTTTGTGAAAATGTGGAGGTTATCATCACCTACCTTGGGGAATTTCCAGTCACAGGGTCAACCAACCAC------------------TCCCTAGCTCAGTAGGATAGGCAAGGAACTTCCTTTCTAAAGAGTTGTTCTTTGTTTTTGCACTTTGCTCTTGCCCCTGGTG-ATCTTCTGTCTCCCCACAACACCTGTAGTAGTCTGTCCTCTGTTGATTTTTTCTCTGTATGTCTCCAGTATGCTGGTGTCTCCGTGCCCATTCTTTGCTTTGCCAATTCTGTCTATATGTTCTTCTTCTTCCTTCTTGGTGCTTCTCTGATCCCTGACTTGCCTTCTATGGCTTTTGTTATGACTAGGAATATATCAACCAGTGTTACATACATTCCCTTCTGTACA--TTCATGTCCTAACCTTCCCTCCTTGCCTCTTGTCTTAAGGAAAAGGGTGCTTCCTCCCTA s canFam2.chr35 29340178 1774 + 29542582 ctgtggaggtatccccccc-----ccccccgcccccccgcctttgctctcctgctctctctttctctcaaaTCCAAGTGAAAAGAAGACCTCGGTCCA---GTGAAACTGCCCCTGTGTGGAG------GCATTGGCAAGCCTTGCCTACAGGTCTGAGGGCTTCCTGGCAGTGTCTGGATCTCTCAGGA----CGGTGGTAAGCTCGCCCGTAGGTCATGCTCTGATTATTAATGGAGC-------CCACGCTGGAGGT---AGGGTGTGAGGGTCAGGGAGACATCTGCAGCCCAAGGGTCCTACAAGAC-----------------------------------GGTGGTGTCGTCCTAAATTA-----GTACTAAta------cctcatgtatcatcccagcaccccttaagaggtatgtgatgtttgccacgagtgaaagctgag-cactggagcctcagaga-------tgagtcctcaaaggtcatgcagtaaactcaggagtctgaccttgagcccaaacct-------caaaattccacgttccttccactTTCCATTATGGCCTTGATTTCAACAGACATCAGATCTC-AAACACAGACCTTTGTGCCC-TTGGG---------GAACTGCCTGCTAGTGGGCACGGATGAGGGG--ATGGGA-GCAGGGCGAGAGCGAGGAGGTA-CTGCCTCCCAGGCCTCTTGGAACTA-TGATCTGACCAGT---CAGGGCAGG-------------TCCCTGG-------GGGCAATGGCTGCTGTCGGATCTCCGTGGTGGACTCTGTGGTGCTTGGATTCAGCATACACGAG-----GGAACTTCCCATCAGGCCCACGGAG------------------------------------CCCTCTCCCTCTGG----------------CTCTGGGGCTGGGATGTTCTCCAT--GGTTCCCCAGTGACCGGC-GGGCCTAAGCG---TCTTCCTCCCAGAGTTGTTGCCA---GGACACTGGAGAGGACGGGAGGATGCTTCCCTA---TGTGCACTGCCTCTGACAGAGAAAGGGTGCCCAGAGTTGGTGG-GGCAGGGTCCTGCGGAATATCCACGCAG-TGGGGCACATGGCCTCCTCCAGCTGTCAACTCAGAATACTGGTAAACCCTTGATTGGCCATGGCTGGTCAA--GGGCTGCTTCCTG-CTACAGAGAG----------TCTACAGG----------TCTGCTGTGGACCCTGGCTCTGGGAAGGGAGAAGG----------AACCAAAGGACAGAGGCCTCG---------------------------GAGAAGGCACAGGGAGAAAA---CACATGAATGGTACACAGGATTTCACATGATAACCCAGACCATA-------GGGAAGGAACTGGGTGG-CGACACTGGGTCAGCACTTGTCGGGAGTGAGGTGGGGCCCCATGT-TGATACATGTTAGTCACACAGTGGGCTGCACAGTCCAGGGCCTTGTACCAATGGAGGGTACGTTGAGAAGGCAGTTAGTTGGCTGAGCCGCACAGGCCCCGGGGCACCAGAACCCGCTTATAG---------------------------------------------CAATGCCT-------------------------------CTCCTGAATTCCTGAATGCAGAGCCCAGACCCCAGGAGAAC--------------------------CACCACCTCAGGGACGTGGCTCCCACATGTGAAGGGTTTTGTGCAATCGAGGACGATCTGGTCACTGGTCTGGGGAGATTTCCAGT----GCTCCAGACAACCCCGTGGCTGACGTGGTGATATTCCTGGTCCAGCAGGCAGAGCCAGGAGGTCCCTCCAGGCAGG---------TGGTTCTGCA----GGTGCTAGACCTGCTGGATCCCTTATTTCCCCCACAGCTCAGGGACAGTCTGTCTCCT-TTGGGTTCTCTGCTCTAGGGCCCC------------------TGCCCATTCTCTGCT---CCAGG--------------CGTCTTCCTGCTTCTTGGTGCT-----GTTCCCTAGATTGATTTCTG--------GTGGAGGCT-----------------------------------CTGCACAAGTTTGTATCTTAACCT------CTTCCTTCCTGTGTCAAGGGGAGAGGTCAGGTCACCCTG a score=6326 s hg19.chr6_ssto_hap7 1412464 151 + 4928567 CCCTAGAAGCAGAATTTAACTTTTGACAGGTTTTGTTTGACTGGCATGATGATTTAGAAAATAATGATAATGTAGATGCCTTTAGAGAGGGTGGCTATGTTCCCCACCGCTCTGCTACCTCACGTCTCCTTGGCCCTTGAAGGCATTTGAC s canFam2.chr35 29342278 142 + 29542582 CCCTA-----AGAATTGAACTTTTAGATGGTTTTGCTTGACTGCCATGGTGATTTTAAAAATACTAGTCATGCACATGCCTTTCAGGAGGGTGGC----TTGCCCCCAGGACTCCTTCCTCTCGTCTGTCTGGCCCCTGAGGACATCGGAC a score=4372 s hg19.chr6_ssto_hap7 1414437 247 + 4928567 ATAAGTTCTTTCTGGAAGGATAAGAATTTAATAACTAACAATGGTTGTCTCTAAGGAGAGGGACTGACTAGCCAGGGAACAGGGGTGGAAGAGAGGCTTTTCTTTGTATGACATATTACATTTTGTGAATTTTTAATTGTATAAATACATTAAGTTTTTTTCTTTTTTAGTACTTTTTACATTATGTTTTACAACATTAAATAGTAaatcaaaaaatggacagagaatgaaatggacatttgcagag s canFam2.chr11 29188755 207 + 77416458 ATAAATT-TCTCTGGAAGGGTGCACA---AGAAATTAACATTTGTTGTTTATAGGGAAAGAAACTGGAGAGCTAGGAACCAGAGCTGGTAGGGAGGC--TTCTCTGCATATCCTTTTCTATTTTTTCG--TTTAAATT---TAGACTCATTGaa-----------------------tatattatctattcaaaaattaatt------taaaaataCAAAGAGAAAATAAAGTAGGCCCCTGCTGAG a score=28697 s hg19.chr6_ssto_hap7 1416083 984 + 4928567 atgtcc-ctgggggaca-aaacctctgatggaaaaccagtgATCTGTATGTAGTCATATGGCTaggtctcaaaacagtaatgagtatgtggtgatttatatacacttagaaacacacaacacttcatatagtttgcagtt-tccatatatgtgatagaagtttaaacacaaggcctgaaaggatacatactaaatttatggcagtgtttgcttccgggaggagagagagaaagagcgagagaggaatggaactaagaagagaacTAAATGGACAGAGGGATTCTCAAATTTTTTTGAGattaaaatttaaaaaattaaatctgtaatatttaatttttaaaaatCTGAGGCAAACATAGCAAAATGTTTGTATTTGTTAATTCTAGGTTGTGGTTATAAGG-TGCTTGTTATATGATTTTCTATTATTTTCTATATTAAGTTTTTCCAAAGTAAAATATTTTAGTTAAAATAGGAAAAATGTTGAAAATgaacaatggatagaaataaaaatagaaattcagaggaattctaaaataaattctaaaattaagaaaaagttcaactcctttcctactactcaggaaaatacaaataatgcgatacaaatacaaaaatgagataaa-ctttgtactcatcagattggcaaaatttttcaaaaatgtccagagctgatgaggatgtggaaaaatgggactcttcat---atgtggctggtttcagtgtgaatgggcactatctttttcaaaagcCTCAAGGCAAATGACTTAAAATGCATTTGAACGGTGACTACAAAGAATATTATAAGAAAAGTAAAA-----------------------TGCACACAGGATTTCAAAAGGGTTTTTAGGCTTCAAGATAAGTCAGGGACGGTGGGGTCGAAATGAAGTCAAGGGACAGCTTACACAGAGATACCCTATAACCAGTCTCCCAACAAGAGAGCTAGATTTTATTTAGTTAAAAATAGAAATTAGAAACAGGAGGTAGTAAAAACAG s canFam2.chr35 29344171 897 + 29542582 atgtctgCTGGGGGAAACAAACCCATGACAGGAATCCACAGATCTGCATTTGTTCACGTGGCT-GGTTTCAAA-CAGTAGTGAGCATGAGATCGTTTATACACATGTGAAAACACACGAAACTCTGTAGGGTTCGAGGTCCTATGTACACATGGCAGAGGCACAAGCATGTGGCCTTG-----TGCACACTGCATGCGTGATTGCGTTTGCTCCTGG----------AGACACAGGGAGAACAGTATAG--------------------------------CCTCCAATTTGTTT----CTAACATTTAA------------------TTTTATTTGACAAAGACTTGAGCTAATATGGCAAAATGTTTACATTTGTGGATTTGAGGCTATGGTTACCAGGCTGCTTATTATATGATTTTCTATTCTTTTCCATACTAA-TGTTTTCaaaataaaacaatttagttaaaa-aggaaaaacataaaaaatgaataaag------aataaaaataaatattcaaactaattct----taaattctaaaat---aaaaaagttcaaac---tgcctggtactcaggaaaatatagataatgagatacaaaca---gtatgagataaaactctgtagtcaccagattggcattttttttttaa--tttccaaaggcaataaggatgtggaaaaatgagaccctttattatacattgctggtaagaatgtgagtggtcatcaccttgCATCAGAAACTGAAGGCAAATAATGTATAATGCAATCAACTGGTGATGAGAAAGCATGTTATAA---ATGTAAAAGGATTTCTTTTTTTTTTTTTTTTTGTAAA-AGGATTTCTAAAAGGTTTTCAGACTTCAGGACAAGTGAAGAATG-TGGAGGAGCAGCACTGTGAAGGGAGAGC---------------CTGTACCTGGTTTCCCTA----GGAGACAAATTTTGCTTAGTTAAAAATAGGCATCAGAAACTGAAAGAAATAAAAACAG a score=8312 s hg19.chr6_ssto_hap7 1417513 282 + 4928567 AGTTCTGTTTAAAATACCAGAATGATTAAAATGTTT------GCTTTCTGTTTGCATG-------TATATCATCCCATTAAAAATGA-------GTTTAAAGTTTTCTATAGAGA-TATATACATGCAAACAGAAAGAAAAAAAAATAGGAGGGCCATCAAAATAAATGGAGCAACAAAGTTCAGTTTATATATAGCAGTCAATATAACATTGGGCTGAATTGCTCAACCAAAGGATCAGTCATGAGATTAAAAACCCCAACAAAATGTAAAGCTCCCTTTCTTCCTTAGAGAAACCCATTAA s canFam2.chr35 29345270 288 + 29542582 AGCTCTGTTTAAAATACCTTGATGGTTAAAATGTTTGTGGGAGCTGGTAGACTGGGTGAGGTTAACATATGACCCCACTTAGAGGGAGGATAGGGTTTAAAGTCCTTGATAAAAATTAGATACATGCAAACAAGGAGCAAGGAAAA----ACAATCCTAAAAATAAATGTCAT----AAGGTCAGTTACTACATG-----CAATGTAACA-AGGACCAAATTGCTCAAAAATGGGATCTGTAATGGGATTAAAAAACCCAAC-ACCTGTGATGTTCCCTTTTTTCCCTGGAGAGATGCATTAG a score=4860 s hg19.chr6_ssto_hap7 1417795 204 + 4928567 AACATAGA-----AGCATAAATCCAGAGATAGTTTAAGGGCTGCTGTGCCTGTGCAGATG----GGAGAACCTCATGGTGGTCTCACTCCTCTCCCTCTGCCAGGAGAAACTGCAGTc--tcctaacaccgcgactccaacttaggagcaag-ggcagggggaagaagctgaaaaggcctggccttcacttgactcagttatccaga--------ttatttaaa s canFam2.chr35 29345668 218 + 29542582 AAATTAGACAAACAGCATGAGCATA-----AGTCTAGCAGCTGCTGTACCCATGCAGATGGGGTGGATGGTCCCAAGGCAGGCCCACCGGGTTTCCTCTA-TGGGAGAGCCCACAGGCAGCCTCATCGCCCCAGCTCCAACCCAGGTGCTAGCAGGGTGGGGAGGAGGCCCAAAACATCTGGTCCTCACTTGACTTACTTACCTAAAGAGATTAGttatttaaa a score=3561 s hg19.chr6_ssto_hap7 1418146 444 + 4928567 ATATGCTTGGGTTTGAGGATCTAAATGCCCCCATCAGAACACATCAGACTATGTAATATTCTTGTACCACAGAAGTACCGTGTCCAGAGCCTAACACAGAGCTCTTGGTA-ACTCACtctgggaagcgcattttaataaaggtaaccgcaaactggactgccttgagaggaggtcacttggatggcaagcagttttgaaatctcatttcaggaggcatgaggaggatctggttggccctgagagactcaggagtacag---------agtgctgccttc----CAGATGCGGGGAGGTTTGTGGTGGATGTCTGTCTCTCCCATGGTCTCAACACTTCTATGCAGATTTCCGCgggctgaattgtgtccctctcacccactgctccaaacttgtatgatgaagccctaactccaagaacctcaaaatgtgactatatttggaaat--agggcctttgaaa s canFam2.chr35 29347336 317 + 29542582 ACAGGCTTGCCGCTGAGGATGGACACAGACCTGTCAGAGGACGCCAGAGAGTTTGACTTTTCT------CAGG----------CTGGAGCCTAGCACGGAGCCCTTGGTAGAGCCACACTGAGAG--------------------CCACAGACTGGAGTGCCTT--------------------------------------------TGGGAGGCA----GGGGATGCGGT-GGCC---AGAGGGCCAGGGGTGCAGCAGCGCTGGGGAGCTGCCTTCTGAACAGAGGCTGGGGGAC---------GTGTCTGCCCCTCTTGTGGTCTGCAGGCTTCTCTTGAGCCTGTCAGGGGCTAGAGT---------TCACGC------------------GGTGAAGCCCTAACCCCAT-------------------TACTTGGGAATGTAGGGCATTTGGAG a score=5850 s hg19.chr6_ssto_hap7 1419715 546 + 4928567 ctaatctgactggtgtcttcataagaagacgagatttggacacacagaagggcaccagggatgctccacatg-aggaaagaccttgtgaggactcactgagtagacggccatctgtaagccaaggagagcggcctcacaggcaacaaccttgatcttggactttcagcctccagaactttgagaaaataaattgctgttgctagagccacccagcctgtggtactttgttacggaggtcctggcaaaagaatacaCAGATGAACTCCCATATCACCGCAGAGCCCACCTTCCATCCCCACAACCCCAGTTCTGAGTTTCCAGCTCTTCGCAAGGG-----ATCTCCCAACCCTTACACCTCCTACTGGATGGAGCAGTGCTCATCTCCTCTTCTCTCTATTGCAAACTTCAGTGcaggcactccacaatcctgcagctgcaatgtgagccagttt--------agcccctctgga---ctgtgtg-----------tgggcaatatacaccaaaattattttaaaatgcacctaagaccgtttggcccagtagtttcatgtctaaaagttttcc s canFam2.chr35 29347678 472 + 29542582 ccaatctgactggtgtccccaagagtgaa---gatcaagacaca------ggtatcagaagtattcc---tgcagcaaaggctgagtgtggac----------ggtggcca-------gccaaggggagaggccccagag-----cacactgacctgggacttctaagctccagaatcgtgagcag-taagcg-----tgttaaagc-atgcaatctggggcatgtggtcacggtagctccaacaaaGTGACCTGTGGACCGAGTCCCCTGTGGCTCCAGAG-------------------------GTTCTGAGTTCCTAGCTCCTCATAGGGGTGGGGGTCCCTTTTCCCTTGCGCCC-----------------------TGTTCCCTTCTCTCC-----------TGACACAGTCATGACACAGTCACGCTCGTG-ACTGTGGCCAAGTGTCCACTTCAGGCCCTTCTGGTGCTCTGGGTGCGGGGAGCAGGTGGGCAGAGTGCGCCAACCATCTGCACCAACACTCTCAGGAcc-tgtgacccagggattccatgtctgactgtttgcc a score=2089 s hg19.chr6_ssto_hap7 1420880 112 + 4928567 ggaagtaatcaaaAGCATATATAGT-CAGAGAAAAGAAACCAGAAGGATAACTTatttgttcattacaatggatacttattac---tatgtgacaggcataattctaggcactttt s canFam2.chr35 29348150 109 + 29542582 agagggaaatgaaagcacatatGGTTCAGGGAGAAGGAA---GGAGGAT----CCTGCGCTCCTGAGAATGGCTCTTCAGCACCTCTGGGTGCCAGACCCAGGTCTGGGCACTGCT a score=12265 s hg19.chr6_ssto_hap7 1421129 513 + 4928567 gaaaaaataaagcagaaag-ggagtatgaagagcagtcgatatggttccagttttcaatagagctgtcaaaataggcttgagaaggtgaaaactggcatcaacttgcaggcagtTAacagtaaggtgccaat--agttgttactgctggttggtgaaattatgggtaattatattcttttatacttttctgtgctttccaaatgcagcacaattaacatatttgcttttacaattaaaaaaaTCCCACAATAAATGTTACTTAAAAAAAAAAACTGACACCTTCAGTTGTTCCCCATTTTCTACAGAATAAAGTCCAACTCGT----------------CCTCCATTGGCCTCTTCCCTTTCATCTAAACTTATCTTTCATTCCTT--------AACTGTCTTTTCCAGTTGGCCTGATACCCTGTGACCCAGATTTGCCAAACagggttgtcagatttagcaaata-aaagtacaggacacccagttaaatatgaacgtcagataaacaatgaataatgcaata-tttgagacatactaaa s canFam2.chr35 29348324 495 + 29542582 GCACAAGTAAGGCAGGAAGTGGGGGATGGGAGGAGGTAG-----GGTCCAGCTTTTGGGAGGGCT--CCACACCGGC---------------CCCCCCACGCCCTGCAGGCAGATCACCACTCAACGTCAACGCAATTCTTGCTGCTCG--GATGGGATTCTGGCTAATT-----CTT-----CTCTTCTGTGCTTTCTGGATATATTGCAGTTAACACACTCATTTTTACAATTAGAAAAAACCCACAATAAATGCTACATAGAAA-------CCACATCTTCAGTCGACTCCCGATTTCTGTGGGAGAGTGTCTGAACTGCTGCTGGTGTTTACGGGCCTCTAGGGGCCTCCGGCCTC-CACCCAACCTCATTGTTAGTTCCTCTCTGCACACACTGTCTTTCCCAGTCACACAGTTCCTTTGTGACCCACACTGGCCAAGGagggttgccagatttggcaaaaagaaagtgtgagacacc-agttaaacctgaacttcagatga----taaatgatacaataagttaagacatacttat a score=4263 s hg19.chr6_ssto_hap7 1421642 223 + 4928567 aaactacttgttgtac---------atctgaaattcaagtttaactgagcatcgtat----gtttttcctgacaaTGTGACA----AGTGATCTTCCTTCCCC-TGTGCTGGAATAATCTCTTTTCCATCTTTCC-AAATTTTTCCAGCTAATCAGAGGGTGGGGAGGAGGGATGGATGTGGGTGGGAATGAGA-GATAAGCCTGCCTATCAACTCCTGTATTTAATATAGGATATTCCTGGG s canFam2.chr35 29348996 218 + 29542582 aagacacac-ttatactgagaaagtatctgccattcaagttgaactaagcatcctctctctattttatctg-----gtgacactaTAGTGATTCTTCTTCACCATCTGCTGGAATAATCGCTT--CCATCTTCCCTGAATCTTTCCACTTATT-------TGGGGAAGCAGG--TGACGTGAAGGGGCTCAGGAAGACAAGCCTGCTGGCCAA-TCCTGTGTT-------GGCTATGCCCGGG a score=4477 s hg19.chr6_ssto_hap7 1422282 110 + 4928567 GATAAAAATTGCACCTTTAATCAGAGAACAATGGCCCAGGTGTCAGGT--ATAGGTGAAAGTCCAAAG---------TTCTCTTCAGAAAAGAAACTCTATTTTAGTTATACAGAACATTT s canFam2.chr35 29349337 120 + 29542582 gaaaaaAACTTTGGCTTTGATCAGGGGGCCCTGGTCCTGGACTCAAGTGAAAAGGTGAATGTCCAAAGGCTTGGAGGTTCTCCCCAGGAAAGAAACTCTGTTCTAGTT-TATAGAACTTTT a score=659 s hg19.chr6_ssto_hap7 1422392 62 + 4928567 ATTCAAATCTTCCACTATTTAATTTATGTAAAATATCCT-AGTCAAT----GTTTTTAACCCGAGTG s canFam2.chr35 29349635 61 + 29542582 ATTTCAATCTTCTAT------GTTGAGGTAAAATTTTCTTAGTCATTTTTTATTTTTACTTTTATTt a score=16227 s hg19.chr6_ssto_hap7 1422454 1374 + 4928567 TTTTTAAACATTGCtttttaaa---------aaataaaaaacttt-------taaaatattGAACCATTTACGGGGGCTTTAAAAACAGACAGCTTTTGTTCCAAATGAGGATGCCTCTCCTTCCGTTTGTCTGACCTACCCTTTGCCCCC-----ATGGTCCCCTACTCCATTTATTAGCTCCACAGAGACCTGACAGAACCTTAAAGTTGATCCCTGAGTCAGACTGGGCCTGTCTCAAGGTCAGCTCACATCTGAAATCAAGCCTCTGCTGAGTCTGTGGAGTAAAAGGCTGATACTCCCTTCTCTCCTGCAAGACAGCTGTGTGCTCTGGCCCAGAGTGGGCACAGAACTGCTG-GGCCCAGGCTGTCAGAAACTTCTGGGCTGGCATCCAGCTGCTCCAATGCACAAAGCCAGCT---AACGCAGGCC---AACCATGCCAG--TGAGTCCACATTACAGAAGGACGGGAAGCAGTGGGATGCGGTACCCAGG-GGTAGCAGTCTAATCCCTCCCAAAGCCAAATTCTAGAAAAATTTTCCAAATTTAAAAAATGGAAAAGGGAAAAATGGAAAATGGaaaaaattttaaatttaattttccaaatttaaaaaatGGTAAAAGCTCTTAC-CCATGGCCATAGTTTTTCATCTTGACATCCTCAGCACTTACCATGGTACCTGGCACAAAACAGCTAATTTTTCAGTTGCCATACTGAAC--AGCCATTTTATACAGGCTCTCTATATTCCAATGACAACAatctttaggcaacattgttaagtgacagaacagtgtttagtatgcaaaactttgcttaataaaggggagaaataccaatatatatagttgtatttaacttctatttacataaagaaacattgaaaggatacgcagaaaactaataaaagtgtgtaccggtgggccagggacgggggtagtggtaggtggaatgaatgaagaagggcaaggtggtcacagtcctacttaatctataccttttaatatattattttttgagccaagtgtat----gtataaccctttaag------ttacat-----agttaaa----atcaTCTATTTT------------TGGTTATATAATTTTGTAGTAGCAAAAAACTCAACTGAAAAATAGGAAGCTATTCTCTCCATTTCTCTCTGTGGTCACATAGCCGCTCACGTTTAATTCTTTCTAAGCTCACAGATTGACCAACACAGCCACCATACTTGAGTTTCCATGACTTTATAATTCTAGTGCCCATCACTGTCTCAATCTAGATTTCCTTTTCCCCAAAAAAAATCTGCTACGTCACTTGCtataatttctagctctctgccaaatgtttcacacatagcttttatccttttgaagatagcatatacattgtta------------tatagtctatgcccaataaccccagagtctgga s canFam2.chr35 29349998 1182 + 29542582 TCCTTAGTCATT---TTTTAAACCTGGTGTCAAATCTTACATTTTATTGGTTTCAGGTATTGGATAATTCCAGGAGG-----AAGCTGGACAGCTTCTGTTCCAGACAAGAATGCAT----TGCTGTTTGTCTGCCTCCCTCCTTGCCCCCCCCCCATGGTCCCTTAC-CTGTTCTTTAGCTCCACAGGGACCAAAGGGCATCTTCCTGCTGATTC-TGACTTA---------TGT-TCATGGTC--------------------CCTGTCACAGATCTGCAGTGGGCAAGGTGGGCACCCCACCCTGTTTCCCGAGACAGCCCTGAGCTCTGGCT--GGGGAGGCACCAGACAGCTGCTGCACCTGCCTCCAGAAACCC---AGTTCACATCCAGC-ATCGTAAAGTGCAAACCATGCCCAAAACCTAAGCCTGGAGGGATGCCACCCTGAGTCCACGGTACAGATGG---GGACACAGGAGGATGT--CACGCATGCAGTGGCAGTGCAAGCACCACCATTACC------------------------TTTAGGACTGAGAGAG--------------------------------------------------------TAAAGGTCCTCACACCATCACC-CATTTCTTTGTCT------CCTTGTCTCATACCCAGGTCCCTGGAGCAGAACAG------TTTGTGTTGCTGTGTTAAATGAAGCCATTTGGTAGAGG---------------GGATGGAAATCTTCAGGCTGCAGTGTTA------------GTGTCTATGGAGCAAAA-TCTACTTAAGA---GGGAGAAACACAAATCTATAC----TTGATTTACTTCTGCTTCTA-AAAGGGATGCTGAAAGGACACACAGGAAA----TAAAACTGCTTCCCTGTGGGGCAGGGGTGGGG-CCGTGGCAGACGGG-----TGAATAGAGGTGGATTGGTTGCAAATTTTCTTGATGGACATCTTT--ATGTATTATT----GAACCAAGTGAATAAGTGTATTACCCTTTAAAAATAAATTACATCATAAAGTTACAGGATAtattttattttattttattttattGGTTATATCATTTTGTTG-GGAAAGAAGCTGACCTGGAAAATAGAGAGCTACTCGCTCCAAATGGCTATG-----ACATTTCCACT-------------TCCAGGGCTCATGGACT---------------------------------------------TGGTGCCTGACACCATCTCAGCCT----CCTCACCTCCCAACCCCAGATCTGTGGAGCCACTTGTTATAATTCCTACTTTTCTGCCAGGTCTTCCCAGCTCAGCTTTTCTTCCTTCAATG-TGGCATCTACGTTGCTGCCCCCCACCCTCTCCTGTCTGTGACCAGAAACTCCAGTGTCTGAA a score=26482 s hg19.chr6_ssto_hap7 1424176 1934 + 4928567 gtttctgcttttcttgtggc-aatctcgcctctctgggg--cttgattatttttgcttgtttgctagatgc----------------------atttgaggcctaggatgctattatcttcttcccagaatgatt---gtttttgacactagcagTTTAGAGTCACTTTGAACAAGTTCAATGGTTACTTGAGATTCTCTGGGCTGGGACACCATTTCTACTCCCTTTAAGCCTTTAAAGGCTGCCAAAAATGCagcttggattctta--aactctct---tcagcaaatgctcccagaacagaagcgaccccagttgc-aggctcacctccatgtt--cctttcctttcccaaattttggcccagcaattcctcactaacctttgaatatttaagtaagatactt-aaaaatattttacccagcatttttagttgtcttcaaatggaggcttggtctgaattactcagtccattaatggaagcagaagcccTTCTGATGCAGGCCT-TAGTTTTTCAGTAGTTTGCTCTTCTCTGGGCCTTAGCTTTCAGAAAGATTCTCTTGTCTGTAGTAGTAAAGTCTGTATAAAGTCTGCATGGACTTTTCTTGCGTACACACATTGCCGCATCACCTCCAGTCAAGGCTGGAAGAGAATCTTGCATTTTACACATCTAATATTTCAGAAGAGCTGGAGTCACAGCAGTCCTCTTCACTGAGCTCAGAAACAAAAACCCTGCTTGTGCATATATTCAGGCTGGGACCTCTAAAATGCAGACACCTAAGTGCTCCAGCTTTGAGAATTCTAGCTTCAGTGTGACAACGGCATAAGGAGTTGCCCTACGGTGTAAAGGCCCCTGTGAGGTCTCAGTTTGCAGACCAGGATGTGACAAGGAGATTGGAGCTGCAGTCAGCTCTAGAGGCTGAAAGAGGAGCCAAACAGCAAAC----AGAGGTGCCAAATGCTGCCTTAGAAATCTGTAAGCCAGCTAAGAGTTCTGCAGTCTCAAC---TAAACAAAACTTTTTTATTCCATTGGTTTGGGGTGTACTGTTCTTAGGGCTTTTGCCAACTGAATTGGTCTGTGGTGTCTTGAAAGATTGGGGTTCTGCACGGAAAAGGCTCGGAGGCCAGTTCTCTGAGGCTGCCTTTGTTGCAAGAAATAAAATGAATCTTTCCAGAGCCACAGCACTAGCATTTGGAGACCACTCTCAGGGGCTTTGGGGCGTACGACTTTCGGGGCTCTGGTCCTCTGTTTCCCTATCCGTAGAATGGAGACGGCTACTCTGTGAGAAGCCCGAGGTGCGCAGGACCCAAGTGAGGAGCCGGCA-----ACCTGAAGTCCTCAGGATGGGGAGGGATCCGAAGGAGGCGGTGTGAAGACTCAAGAGGACCGCCTTGGGGTGGGAAGAGGACAGCCCGGCACTGGCTGCTGGCCCAGGTGCTGTGATGGGTTTCGTGCGCAGAGAGGCCTGACAGCCTCTGCATCAGTGACCGGGCGAAGAGTGGGGCAGCTCGGACGGCGGTTGGGGAACGTTAGGGAGATTGGCGCGCGGACCAC--------TGGGTGA-GCGCCCAGGAACG--CCGGACGCGCG-CCTTCACGCCCGGGTGCCTGGCGGCGTTTTAGAAAAGCTGTATTTGAAAAGCAACCGACTGGGGTGAAGGCGGGGGAGCGGAATCCTGATTACACTGTCCCAATTTCAGTTGAGGTGGGCTTTTAAAAGAAATCCCAATTCACACATTCGATCAGGTTAGTTACAAGAAAGGCTGGGAGGAGG-----TGGGGCTGGAAACACCAGAGGGCCCAGATGTCCGTTGGCGACGGTCTTCTGCAAACGACAGAGCGCAAGCC-TTGCCCCTGGAATTCTAGAGCC-----GCCGCAAAGATAGGAACTCAAAACGACCCGAGCCCCGGAGCCGCAGCCCCTCGGGACGGTCACGAGCAGAGCTCCCAAGGGGACCGCTGGGGACTGGGCGGGGGCTCTGCTTCTC s canFam2.chr35 29351180 1634 + 29542582 GCATCTGCTTCTCTTATTGCTGGTCTCTTCTCCGTGGGGAGCCTGGCGATCTTTGCTTGCGAACTAGGTGTTTGGTAACGCATCTGTAGGATAATTCAAGGCCTGCAATGATGTTAGTTTCTTCCTGCAAAGATTTTTGTTTTTGACAGTAGCAGTCTAAGAGTTCCTTAAACGAGCTCGGGA------TGAAGTT-TGGGGCCTGGGACTTCATTTCTA--------------------GCTTCTAAAAATACAGCACGGGACCTCAGCAGCCTGCAGAATCAGCACACATCCCCAGA-CAGAAGCAACCCCACGTGCCAGGCTCCCCTCCTCAGCAACCTTTCCTTTCCCAAAATTTGA------ATTTTCTC------------------------GATACTTTAAGAGTATTTTATCCAGATTTTTTAGTTGTCTTCACCTGCAGGA--GGCATGAATTCCTCAGTGCTCCCACAGAGGTGGAAACCCTTCTGATCCAGGTTTCTGGCTTTTCAGGGCTTTGCTCT------------------CAGAAAACCTTGTTTCCTCTGAGATGCATGGTC------------ACATGGAGTTTCCCGGGGCA-GCATGCAGCCCCCTGACC-CCAGGCAGGGCCGGAGTACAGTCTTGCATC-----------------CAGAAGAGCAGAAG-CAGAGTGGTCCTCCTCACCAGGCTT-GAGACAAGAGGCCTTTGGGTGCA------CAGG--GGGGCAACTGAGCTGAAGGCC----AGT----CTGCTTCCCAGACTCTGGCCTCAGGGCAACACCAGCAGTAGG--------------------GCCCATGATAGGTCTCAGTTTGCAGACCAGGATGTGAC-AGGAAATTGGAACTG-GGCCAGCTCTAGAAGCCGCAAAAGGAGCCAAACAGAAAACACTTAGTGGTGCT-AATGATGCATTAAAAACCTGTAAGTGAGCAAAGGTTTCCGCAGGCTTCACCTGCAGACAGAGCTGCTTCA--CCCATGGGTCCGGCTGTCCAGTCC--AGAGTCGTGGCTAGGTGCATCCGTACG-GGTGACTTCAAGGGCTGAGGGTC--CACGGGGAAGGGCCGAGG--CAGGTTTCCGAGACTGCCTGTCTTGTGGGA------------TCTTCCAGGGTCA---------CTTATGGAACCCGCT-TCAGTGACC-------------CATTCAGGGCCCTGGG-GTGTGTCACTCCATCCGCAGGATGGAGGTGGCTGCCCTGC----AGGTCCAGGTTCGCAGGACCCAAATGCGCTGTGGGCGTGGACACTTGG------------GGGGGTGGTCCCCTCAGTGGCGGAGTG---------GAGGGTGGCC------------GAGG-------GGCCCCGGCTGGGTGACTAGCTGTCGT--TGGGTG------------------------------GTCGGTGGCCG------------------------------TTGGGAACGTTGGGGCGGTTGGGGCGCGGGCAGCAGGGGGCGTGGGGGACGCGCTCGGGAAGGATCCGAGCGCGCACCCTCCGCGCTTGGGGGACCGAGGGTGCTTTAGAAAA---------------CAGCCGGTT----TGGAAGC----------AATCTTGGTTATACTGCCCGGCGTTCAGCGGTTGTGGAGCCCTCCTGGAAGCCGGCAGCTGCG----CGGGCAGGATGG-----AGAACAGCCCGGAGCGTGGGCTCCGGGGCGCGAGGCCGCAGAGCGCCCTGAC-----CAGGCG---------TGCATACCACTCCCCACCTGCCGCTGCACCCGG-GTCACGGACCCCAAGTGTCGTGGGGGCACCGACCCCAAATGTCCTTAGGTGTGGACCCCAACTGTCTGGGG----------GCACAGACCCCAAGTGTCC---------CTGGGCGCGGATCCTGACTGTT a score=3930 s hg19.chr6_ssto_hap7 1426664 200 + 4928567 agaaaagaaaaagga--tacagaatttga-----caaaattaagaataaaagcaaata-tgacttacaatgaggaaaaacaatgacagcaaatgataaatgtttaaaaactgacatatcacaaacatcaaaaaatccccccaaaattctaataactgcttgaaccacccctatattttcc---cattt-----atattttttgattccctcttcat s canFam2.chr35 29353046 194 + 29542582 AAAACATTAAAAGGATCTCCCGAGTTAGAAaatgtaaaactaggagccaacgtgaatatttacttgcaatga----------------caaattacaaatattaaaaagctgac----tgcaaacatgaaaacatctacaaaaacattt--tcaaccctctgactgcctctgtatttcccgtatatttttagcatatcttttgattccatctttat a score=4008 s hg19.chr6_ssto_hap7 1426865 69 + 4928567 cgacaacacttttgtaatgtattttcctgggtgagaatgaataatttggtatttcgtctagcatagtta s canFam2.chr35 29353426 68 + 29542582 tggcaacatttttat-acacattttctctggtgagaatgaataatctgatatttcctctagcatggtta a score=21340 s hg19.chr6_ssto_hap7 1426936 578 + 4928567 caaaaaaagttttt--attgaaagtttagaaaagttaatatccatttcacaatcgttattggtaataatatgcaaatttttagtgctattaattttggagaagcctctgtgaagagtttcctatgtaagc-ctgagatttcagggcatttcaagttttcttgggcagtgactaatcttaaatactcttttaagttgctgaaagtcattggcctgtttttcgttaagtccttgttgtgaaggtgtagtatg------aaactgtttgtagatgtcaatattttatgccaaaacaacaat---ttttttaagttttaatgtgtttatgtggtta-attcttcatcaagtgattgtcaaacaatctag--gcatctattctatttaaaatgtatcccttcccttcaataaattgctggttttggctggaaccaaactttttttcttcttcaattccttttctgatgtcagaataacttctattaatttcatGTGCAAATATGCAAGAGATCATTTTATTTCatgatgtatgtataattgtat------atgcatat-ttaataagtatattcctaaagaagagagcttccattttgactagac s canFam2.chr35 29353703 564 + 29542582 aacatagggtttttaaattgaaagtttagaaaagtta------gttttgcagtgattattggtaatgtc------gatttcagtattgttaactttgggaaaacttttgtcaaaaggtccttatgcgagctctatgatttcagggcattttgagttttcctgggcagtcactaactttaaa-------ttaaaatgctaaaagtc--tgatgtgtttatttttcattccttgttgtgaaagtgtattatgagctctagattctttgtagatgccagta--tcatgctaaatcaacaagaaattctaaaaactgcaatgtgcttataggtttatcctttttatcaattggttttcaagaaatccaggagtgtctttctctctaaaaatgtatctccttc---------attgctgatttttgttggatctgaacattttttccctttctattcaccttttgatgtcagaataact--cgttgatttcatATAGAAATATGTGAAATATAATTTTATTTTATGCTGCA--GATAATTGTACATAATAATGCAAATATAAATAAATATATTCTTGAAGAAGAGGACTACCATTTTGAACAGAC a score=7373 s hg19.chr6_ssto_hap7 1431013 133 + 4928567 tttatttttatttttttaaatCAGTAATCTATGTGTCCAAAGCATAAACCAGGCATGGGCATAGACCAGAAGCCAAGCTGGGATAAACAGGGGGTTGCTTTGTTCCTGTCTGATGTGAGATGGGCACCATTAA s canFam2.chr13 33903187 127 + 66182471 tctctctttctttctttTAA------ATCCACATGTCCAGGGCATGAACTAGGCACAGGCACAGACCAAAAGCCAAGCTGGGATAAACAAGGCGTTGCTTTGTCCCTGGCTAATATGAGGCAGGCACTACCAA a score=4637 s hg19.chr6_ssto_hap7 1435278 128 + 4928567 CCCTTTGCAGAAGGACAACCAGGAGGAGGGTGTCTGCCCCATCTGCCAGGAGAGCCTGAAGGAGGCCGTGAGCACCAACTGCGGACATCTCTTCTGTCGAGTGTGCCTGACACAGCATGTGGAGAAGG s canFam2.chr11 3419080 124 + 77416458 CCCTGTGCAGAC---CCTTCAGGAGGAGGCGGTGTGCGCCATCTGCCTCGATTACTTCACGGACCCCGTGTCCATCGGCTGCGGGCACAACTTCTGCCGAGTGTGTGTAACCCAGC-TGTGGGGAGGG a score=29532 s hg19.chr6_ssto_hap7 1440611 861 + 4928567 GGTGAGGCTTTTATCCATGAAGACTCGCTGTCTGCATTTTCCCCTAGAATCAGGGCATAAATTCTACATGATTGCATCAAAATAGTTTATCTTTTGGATAATGAGCTCCATTAGTTGTGTTTGTTTAACCTACATTTTTTTA---TTCTGTTATTTCTTCTTAATT-----ATATTTTTGGGC--AAATTTTTAGAAATTTGCATTTAAATTGGCTCTATTCTTTTTTATAATATAATCTCCATGTCTTAAATACACAGAAATTTGTTTAATATGAGTGTGCTGCTCTGTTTTATTTTTAAAGGTTTATTAATTCCTGGCTTACTTGGAATTTCATATAGTATGTTGTGTGAAGGATGACTCCACGTTAATTTTTCTTTATTCTGGTATCCAGTTGTTCCCAAAATATTTATATAACAGTGAGTCCTTTCCACATTTACGTGTTGTTTCTCGCTTGACATCAATTAAGTTCTCATGATGGGCTGTTTT--TTTTTTACTCTAGTCCATTGATTATTCTTTCTGTT------------ATATAGTTTTGACAACATGTTACTTTATGGTTTATTTTTAAATCTAGCAGCATTTTTGCCATTTAATAATTTT--ATTACCTG----ATATTTTTGCTG----TCTTTTAAGATGAGTGCTTTTTTACAATGTTTCTAAATTTCATAGATCATTCCATAAGATTTTAATGGTTATTGCATTAAATTTGTTGATTAC--TAAGAATCATGACTTTTGGGGATTTAGTTAGTCTTCTCAACCAGTACCAAGATACATCACTAACGGCTTTCCACTATGTATCTGAATCAGATATTAAATTGTCTTTACTTAAACCTCATGTGCCCTGACTCTATTGAGGGTAGCTATGTATTTTATAACACT s canFam2.chr35 29355521 846 + 29542582 GGAGACACTTGCACCCCCAGATCCACTCAGCCTGCACAGCTCCCCTCACACCGGGCGTAAATGAAGTGTGATGGCACCAAAGTTCTTTCTCTGTTAGATGATAAACTATTTTAGTTATGGTT----AACCTCCATTTTTTTAAAGCTCTGTTATTTCTTTTCTGTTTTAGAGTATTTGTGGATCGAGACATTTAGAAATTTGCACTTAAATCAGTTTTATTCTTTCAAAAAATAGAATCACCGTGTCCTA----CTCAGTAATCCATCTAA-ATGATTATACTGTTCTGTTTCatttttaaatattaattaattCCTGGCTTCTCTGGAATCTACTGTGCTGGGTTGTATGAGGGATGATTTCATGTTAATT---CTTTTTTCTGGT--TCAGTTGTCCCCAAATCATTTCTGTAATAGTAAGTCTGTTCCACACCTATGTGCTATTTCTGCTTTGACATAAATTAACTTTTTATAGTAGCACAATATACTTTTTTACTCTAGCCCTTTGAATATTTTTTCTGTTCTTACAGATATTATGTAGTTTTGATGAT-TATTCCTTTTCG------TTAAAAATCTAGCAGTACCTTTGCCATATAATAATTTTTTATAAACTGTAAAATGTTCCTGCTGATTACCTTTTCAGAGGCATCTTCTTATTCAGTGCTTCTGAGTTT-ATAGAGCATTCCTTCAG--TATAATTGC-ACTGCATTAAACTTGTTGGTTACATTAAGAATTATGACTTTTGAGGGCTCACTTA-CCTTCTCAACCAATAGCAGGATATATCACCGA-GGATTTTCTTCGCATTTCTGAATCAGATGTTA-----------TTTAAACCT-------------TGTATTGAGAGTAGATATATATTTTATAAGGTT a score=570 s hg19.chr6_ssto_hap7 1441502 32 + 4928567 CAAATGAGATTCTTTGCTGAGCTCATGTATTT s canFam2.chr35 29359794 32 + 29542582 Caaattttattacttatttatttattttattt a score=593 s hg19.chr6_ssto_hap7 1441534 309 + 4928567 ACCATACATTTTTTAAAATTTTCTGACATTTTCTAGA--------TCATAATTGTGTGAGTGATGTTGTTTTTAATTCATATTTTTGGACACAG-----TTCTGTAAGGAGCATG--CATTTTGAAAGCTGTTAATTTTTCTTTTTTTTTTTTTT-TTCAGTGTCAGGGATAGGTACTTTTTGTCTGTTAACCACTTTTCTT-----------TTGTACATTGTGTTAGCAAGTTGTTTAAGAACAAATTTAATGCCCTTTTTTGTCAGATTTTAAAAATTTAATATGAT-TTAATCTGAATGACAGAAT--TTTAAAA-------TATTCA---TTTAGACAAGACAG s canFam2.chr35 29360020 307 + 29542582 attatattctttataaactttttttaCATTTTCTAAAACAACCATTCATAAT----------------------ATTCAAAGTTAAGGAGAAAAAAGACTTTCAAAACATGCATGTACATATTAAAAACTATTAATGGTACAAATTATGTTTAATAGTGAATGAAGGGAGTAGGGAGAAAGTCTCTG------ATTTTTTTTAAAGGTCAGAACTGAGCATTTTTTCACATAGTCATGAAAAATGAACATTA-----------TATTAACTTTCACATATTTCACATAAAATTGAT---AAGGACAGAGTAATGTAAGAAAAGGTATAATCAATATTTAGGCACAACAG a score=1355 s hg19.chr6_ssto_hap7 1441891 42 + 4928567 ATATTTTGGTAGGTGAAAGTGTATAGAATTTAGCTTTCCAAT s canFam2.chr35 29361936 41 + 29542582 ATATTTTAGGAAA-GCAAGTTTGTACAATTTTGATTTTTAAt a score=2969 s hg19.chr6_ssto_hap7 1441933 92 + 4928567 TCTAGTGAGTGTCTTATTTATATTATATGCACCCATTAAATACTTTT---ATGCAAAAATTGGTGAAAAAGTACTTTTTAGAAACAGAGGACTTT s canFam2.chr35 29362167 89 + 29542582 TCTAATGAGTG-CATACTCATATGACATTCATCCACTAAATATTATTTTAATGCAAAAAG----GGAGGAATCCATTTTAAAAA-AGAGGACTTg a score=6295 s hg19.chr6_ssto_hap7 1442025 142 + 4928567 ACCTTACTCATTTTGAATATTGTAAACAATATGACTGTATTATCTTCAGTCATTCTATGCCTTTATCTTTATTACTGTTATCTTTGCCTTCTTTTTTTCATTTACACAGTGTCTGTAGTTGGCTT---------TATTAAATTTTAAACTG s canFam2.chr35 29362430 142 + 29542582 ACTTTA-----TTTGAATATTATAAATGATATATCTGTATTATCTTTGATTATTTCATGCATTTATATTTATTACT---ATCTTTGCTTTATTTTTT-AGCTTATAGAATGTTTGCAATTGACTTCAAACTCTTTATTAAATTTTAAACTA a score=28989 s hg19.chr6_ssto_hap7 1442167 1440 + 4928567 CCAGATGATAGGACTGTGGCTTTTTGAACTGGACCTT---AATAGGCCTGACTTTGACAGGCAGAAAAATAAAGCACTCCTGACAGAGAGAAGTA----AAAGGCCATGAGGAGGTGTGGCTGCACGG-GTGTGTTTGGGAAGCAGAGAGCAATATTGTGTGCTGGTGAAGAGAGTTCAGAGTGAGCAG-AGAGAGAATCCCGGACAATGTCAGTTGGGGCTGGGTTCTGGGGCACCTTGGATGCTGGGTGAAGGAGTTTGGGCTTATCTTTGTTGCTGAGAAGCCATTTTGAAGGGAGGACTAACATCAA-CAAAGGTGAAATGTGAC--AGATTTCAAGCTGAATGGCAGGCAGAATGGCAGTCCCAATGTCAGAAACATGAAGGTCAAGAGGAGTGGACTGCAGAAGAGCTTGGGGAACTGGGCAGCATG--TTTGATTCTACCATATTGATTTTGAGCTGCCAACAGGGCAGTAGGCAGCACTTAGCTCTCACTTGGAAGCATGAGATGGATTGCTAGGAAAAAAGATTTGGTTTTGGAATT---CTAAGATCTGAAGGCTCCAGAAAGGAAAGCTAAGGACATAGTCT-GAGATAGAAAAGGGTTGAGGAGCCAACTTCAAGG----CTCCTTTTTACAGAAAAAAATGAAGAGGCAAAGAAGCAGTGGCAGAAGGCACAGGTCTAGGAAGGATGGGGTGGAGAGGAGGTGCAG---------------------------------------------------AAAGGCAC-CTGCGGATTTCATGG------------CTGGAGATCTCAGGTGACTTTGGAGAGAGAGGCTTTAAAGGAGTGATGAGAAACAAGGCGGCTGGCTGAGGAATGACGACAGTGA--GGAGGTGAAGACAGCAACACCAAACAACTTGACTGTGAGGGCAGCAAGTGAGTAGAT-----GCAAGC--GGTGAAGGCTGTTTG--TGCTTTTCAGGACATGAACTCTTGTGCTCACACAAACAGTTCCACACCAGCCTGCCACCTTCTTCAGCGAGACTCATGAGCGACATCCATGATGCCCATTTATTACCTCCCACTCCTATGACTTTTTTATTTCGTCTCTGCTGGGAAATGCCTGCAGGAAACACCCAGTGACGTGACACGTTTTTAGTAACTTTGTGGTGACATCACTGTCTTCTCTGCTTACTGCAGCTTTCTGTTCACCAAATGCCCTTGCTGACCCCTCACACACACAGTCCTTTGACCTTGATTTCACCAGGAAATTCTCAGGCCG-GAAAGAACTT-TCAGTTGTCTTCACCATCCCCTGACTTCTACCTGTACATCTC-------------CAAAATCTCCTCAAA--------------------------------AAAGATTTAAAAAAA------------------------------AAAATCTGAA-------------------GTGGGAAAGATTTAG----TGAAACACACACTTTTCAG--CTAATAGCACATCCTGATCTTTAGTTCACAAATCTCTTCTCGTTTTGTTTTCTATTTTATCATTCACCCTCCAACTGCCCCCCGAACCATGGGCAGCCATTTAAAGCATTTGTTGTTATTT s canFam2.chr35 29362816 1484 + 29542582 CCAAGAGGTAAGACTATGGCTTCTCGGCCTGGATCTTGTGAATCGACCTGATTCTGGTAGGCAGAAACAAGTAGCATTCTTGGCAGAGGGAAGTAGGCCATAAGGCTTGAGGGGATGTGGCCACATGGAGTGTGTTCAGGAAGCTACATGTAATTCTTTTGGTTAGTGGGGAG---CCTGAG-GGGCAGTGGGGGGCAGCACTGGGGATGGAGATCGGGGTCAGATCCCTGA-CAGCTTGGACTCAGAGTTAAGGAGTTTGGGCTTATTTTGAGTAATGAGAAGTCATCTTGAAGAAAGGAATAACACAGGTCAAAGATGAAATATGGCTGAGATGTCAAGTGTTATGACAG-CAGG-TGTTGAGTCCAATGACAGAAATGTGGAGGTTGAGAGCAGTGGACTGCACAAAAGTAAGG-----TGGACAGGATGATGTTGGCCTTTCCATATTGATTTTGAGCTGCAGCTAGGGCAATGGGAGAGAATTCGCTCTTGGTTGGAAATATGGGATTGATTGTTAGGGACAAATACCTGGTTTGGGAATTAGGATGATATCTGAAGCCTTCAGAATGGAAAATTAAGGGCAGAGTTTGGAGACAGAGAAGGGTTAAATAAGCAACCCTAAGAAGGCTTCCTTCGTGGAGGGAAAAGTGAAGAAGCAGAGGGGCAGTGTGAGAGGCACCAGGACAAGGAAGGATGGGTGGGGTGGGAAGAACGGAGTGGGGGTAGGATTTGGGGACAGTTACCTCAAGGAGGAGGAAGCCCAAGTAAAGGCCCTCTGGGGCCTTCCCAGAGATCTCCCTTCCCAGAGATCTCTGGTGACCTTGGAGGGAGAGGTCTCCAAA-------GAGAAGCAAGCCCA-TGGCTGAGCAGTG----CAGGGGCCCGAGGAGAGGAC-GTGGGGCCCAGAAGGTGGGTTATGAGGGTGGAGAAAGAAAAGACTGGGGGAACGCCAGGTGAGGGCCATTTGTTTGCTTGTTGGAGCAT------TTGCATTCCCCTGGGCCCCTC--------CCTCCCACCTTCCCTTCCATCTCTGCCGTGGGTCATCCATGGTGCCCAT-------------------------------------TCTACCG---AATG-CTGCCGGTGACACCCA------------------------------GGGGCACCCCTGTGTCCTCTGCCTCCTGTGGCTCTCTCTTC-------GCCTCTGCCAACCTCT----------GGCCCCTGACCTCAATTCATCCAG---ACTCTCAGGGTGAGGAAGAACTTCCCAGGTCCCCTCCCCTGACTCCAGCCTCTGTCTGTATATCTCTTCTTGACCAAAGCAATACATTTTGAGAGTTTACAAGAGGAAATGAGGCAAAAAAATGACAAAAATTAAAGAAAATACTCTTCATAAATAGCTAACAGCAACAACAAAATCTAAAAATATTTTTCTGACCCGCTGTGGGAAGAATCTAGCGAATGAAGCACACAGTCTTCCGTTTTAACTGCATGTCCTTATCTTTGGCTCACAAA-----------CGCACTTCCTA-ATTACCACTC-CCCTCC--CTTCCCT----------GGCAACCTTTTAGAGTCTTTGTTGGGTTTT a score=23475 s hg19.chr6_ssto_hap7 1443607 997 + 4928567 TTGCTTCTCTTATAGGTCATCAAAAACCTGAAAGCAAAATTTTTTTAGAAACTCAAATCATTCTTTAACTCCATAGCTTCAAGGACACAGAGACACATCCAGATGCTGATTTAAGATTGAGAGAGAAGGCACTGCCTACCTGGGCTATGAGTTTGCACCTAGTAAAGGGCTCTATCTTGTCACTCATCCTAGTGAGGACCAGGCAGCAGAGGTAGCAGAGGGTTGCCATTTCCTCTTTAAGGCAATTCCCTCCAGACTGGCTTCATGTGTTAATGTAAAATAGTAAGAAGTGCTAGAAGACTGTCATATAACTTTTATATGTTGAGAGAAAG-CACCCTGAAGTCAAGTAGAAATGGTTCTGTTGCTATCTATTATTTTTTCTGTACTTCTAAGACTGTAAAAAAATTACCCATTACTATTTCCCCCCATCATTATCCAATAAATAAACTCTCAAGTCCCTTACTCCAACCATGATGCTCTAAAAGCATTTCTTTTTAGGCAGAATTTTACATTAGTTGCATTCTGGGATCAGGCCCCCTACCGTGTTCCATTGACTCCTCCCAGTGGGTGCCCCCCTCACTCCCAGTCTGACAAGCAGGTGTGTCTGTCTCTTTAGGAACGACTCAATCGCCGGAGCAGGAAGCTCAGAAAGGACATTGCAGAACTTCAGCGGCTCAAGGCTCAGCAGGAGAAGAAACTGCAGGCTCTGCAGGTGGGTTTTTCGGGTTCCTGGGAAGGACTCCCTGGAGTGTTCTCAGGAGCCCTTACTTAACTATTCTGGACATCTGTCTGTCCCTggagcagcctgatgtgggcagatggtcgtggaggctgaaaacccgggtgttggccttggcgtcaaagtttgctggttgagtgacctacgcaagttaagccctctgatctttatgtgacttacatgttaaatgagaaccagtcctgctctacctggatcacagtagggatcaaaggagaccagtgtctcgtcaactgaaaa s canFam2.chr35 29365191 861 + 29542582 TTGCTTCCCTCATTGTTTATCAAAAACCTGAAAACAGA--TTTTTTAGGATCTGAAATCATTCACTAACTCTATGGAGTTAGGGCCACAGAGACCTGTGGAAACACTGATTTGAGATCTAGAGAGA-GGCCTTGCATCCTCAGGCTATGGGCTTGTGGCCA--CAGAGGCTCT----------------------TGCCCACCCAGCAGGA----CAGGGGCTTTGCCTCTCTGCT---GACTCAGTCCCACTAGGCTGGCTTCAC----TGGCGCAAA-------GAGTTGCAGG--GATCAGCAAACAGCTTTTAGACATAGAGAGAAAAATATCCTGAATTCAGGTGGAATAAATCCTGTTACTGT--GTTATTTTTT-GGTAGTTT--AGACT-TCAAGAAATTACCCATTTCT---TCTCCCAGCCACCATCCACTCAGTGATCTTTAGGGCTGCTTAGCCCAAGCAGGATGTT-TGGAGGACTCTGGTTCTAGGCAGGA---------------ACTCTGG---------------TGTGCCCCGTTGA-------------ACGCCACCCCCACCCCCAGGCTGACA-GAATGTGTGTACGTCTCTCTAGGAAAGGCTCAACCG---------GAAACTCAGAAGAGAGCTGAAGGAGCTTGGATGGCTCAGGGCACAGGAGGAGGAGAAGCTGCAGGTGTTGCAGGTGGATTTG-CGGGTCCGGGGAAGGGCCGCCTTCGAGGGACCTCAGG-GCCCAGACTCC-CTACTCTGGCC-TCCGT-GGTCCCTGGAGGGGCCTGATGCCTGTG--TGTTGGGAGAGGGT-----CCCGAGTGCTGGC-TCAGCCTCAGAGTCTACTGGCTG--TGACCTGGGCCAAGTCCTCCCTCTGATCTTCACATGGTTTAAATATGAGACGAGAGTCAGTCCTGCTCCAAACAGCTCACAGTGATGATTGAAGGGGAT------------GGCTGAAAA a score=1351 s hg19.chr6_ssto_hap7 1444941 22 + 4928567 CCATAGGCCTCCATTTCTGTCT s canFam2.chr35 29366052 22 + 29542582 CCATGGGCTCTCGTCTCTGTCT a score=17436 s hg19.chr6_ssto_hap7 1445073 912 + 4928567 GCAATACCTGTG-ACACACAGAGGCAACACCATGAGGGCAAGAGGAT-TGAGGAATCAGCATTCCTGCTCAGA-CATTCAGAGACTGTGAAGGGCCAGGAGGGAGCCACCTGACACTGAGTCTTAGGGAGCCCCTTTCCTGTAGTTTCAGGTAGACCACGGGAACCACAGGCTGGAGGCTGGGCCGGAGAGCCAGCACCAAACCAGGGAACAGCTGGGTGCCCTCCCCCAGCAGTGGCTGGGCCAGCTGGAGCACATGCCAGCAGAAGCGGCCAGAATCCTTGACATCTCCAGGGCAGTAACACAGCTCAGAAGCCTGGTCATTGATCTGGAAAGGATGGCCAAGGAATTAGACACCAACACACTGAAGGTGCATACCCTGAGGCCTTCCCCAAGGGCTGGGATTCTCCCCGATAGGAGGCAGCCCATCTGCATCACCCTTCTGGAAGGTGTAAGAGGGAGGGGCCTGTGTGATATGTGGTGACTTGTGGTAGATGTGGCTTGTTCCAGGCTACAGAGTGCTGCTGCAGCAGAATGGGCACAGAAGAGGGGTGTTGCTATGTTCCCCCAGTTCTCAAGGTGGCACCCCAGAGTGGCCTCCAAGAGTGAATTGGGAAAGGAATTTGGAGGTGATAGGAACCTGAGAACCAATTATGATTCTCACTTTTT--CTC--TCTCCTAGAATGCTGGTGACTTACTGAACAGGTACGAGCTGTCCCTTCTTCTTTCCCACATGTGCATATAAACCCACACAACACAGACATGCACAGAGGTCAAGGAGACCCACTGCTCCGTTAGCTTTTGTATCTTGATGCTACATGGCCAATGGAAGAGCCAATGGAATATATGAATACATATTAATCTATGAAGGATTTCTTTGTTTCTAGGAGTGCTCCACAGAAATTAGAGGTT-ATTTAT s canFam2.chr35 29366140 682 + 29542582 GTGGCACCTGTGGATGCTCA----CAAGAGCGTGGGGGTGAGGGAGCATGGGGCACCAGCATTCTCGCTGAGAACACTTGGCGGTCC--AATGGCCAGGAGGAAACCA--------TGAGTCTCTGGGAATCCCTTTTCTGGAGCTCTAGGAAGCCTGTGGGACCCACAGGCTGGAGGCCCAGCTGGAGAGCCAGCAGCAAGGTGGGA---------------------------GGCCAGGCCCACTAGAGGACATGCCAGCAGAGGTAGCCACGATCCTTGGCATCTCCAGAGTCATGACACAGTTCAGCAACCTGCTCACAGAGCTGCAAGAGACCATCCAGGGGCTAAGTGTGGACACACTGAAGGTGCAGACCCCGGGGGTCCCCTCAAG---------------TGGTAGGCGGCA---------------CCCACCGGTTGGTGTGAGAGGGA-------------------------------------------TCCGTGGCAACAGCG---------AGCA----GGGCACCA--------------------CCCCTAGCTCT----GGGGGACCCAGGTGGGG---------------------AGGGGTTTAGAGGTGGCAGGAAGCTGGGAACCTATCGTGATTCTTGCTCTCTGGCTCGGTCTCCTAGGATGCCAGTGACTTACTGGATAGGTA-----GGTGCCATCTCATTTCCCACAGGC------------------------------CTGAGTTCAGG------CTCTGCCACATT--CTGGGGGATCATGAGAACGGATCAC------AAGAGTCTGCAGAATCTACCA-----------------AAGGATTTCTTTGTTTCTAGGAGCAATCCACAGAAATTAGAGGCTGATTTAT a score=9256 s hg19.chr6_ssto_hap7 1449421 1255 + 4928567 CCACTgcataatggtcatgagcacagactcgggagccaaaccacaagacttcaaatgctggctctgcgacttac-tatcagctgatttgagaccagctgctcggcctccacatgtctcagttctcttatgta---------------caagatgggcacctacctcctgaggttgttgtgaggattaaatgagttaatatatacaaatatttattatggtgtttggccaaaataagttctatgtgtgtgattgttatCAGCATTTTTGGAATCTCTAGTTCTTCCTACAGGAACGAGTGGTGACCCCACCAACTCACTCACGCCTGACATAGCTTCTCACGGGGCCTGGCTCATGGTGGAAAATCGCATTTTCCTTATTTCTGCTTttataataaacttacctatcatttgaactaacttgagtgggtctcaattctttgcaatagaaagggTTGCTACCATGTAAGCTGTGAAAAA-TGAGGTGTAAACTGTGGATGTTACAAATGTGCAACAGTCCTTCAGAGTC--GGAAAGGGTAGCTGGGACTCTGGGG--CCTCTAGACTTGAGCACTTCCTGGGG---AGGGAACCCAGAGTCCCACTTCCGGCCAGCAGAGCAAGGAGGTTcattaagctg-------ccttatcttgaagttaccaggttttaggatctatccacttcccctgtgctgactccatactccgaaagcaagtaaacttcaagtaaaattaccctaggggagaagcaggtactgacagaccaacatgagtgttttcacttatgagcagttttatttctcagtgtaagacatataaattgTTCTCACTGACATATAACtattaaaagaaaaataaaataaaacaatttaaaaagaagaaatataaattGTATTTCTGAATCCAAGTCACCTGTGGGG-GTGTAGCCAGCATTAAAATAATCGCCAGGACCCATGCAGGCATCTATCTCTGAATGAGGCAGTGCAGCATAGCAGTTAAGAGCTCTTGGGTCAGACATGGATGAACTGGTTGCATGATCTTGGCT-CGTTACC-------------------------------AAGATAAAG------TGACACAAGG--------------TGTGTAAAGCTCC-----CGAGCTGCAAGCCAGGATCTTCATACACATACATTTTAGAGG-------------------ATAATA-GTCCTTTCAAAAGACACAGC----------TAAAGCCAATAAAAATAAACAGAAAAATAGGATCTACCTTTCTGGAATCACAGGTTTGGGTGCTTTGCATATGTTTTATCATTATATAGGCACTTGTGTGTGTCTGTATTTTTTTGAATATACAACATTTTA s canFam2.chr35 29367018 1056 + 29542582 CCACTg-----tggtcgcgagcacagcct--ggagccagaccatcgga-tccaagtgtgtgatatgtctcatgtgtgtctacagatttggggccagctg-tcagcctccacctg-ctggattgtctcatgcatgcagtagggccactcatgatgg-caccaacctcat-aggtt---------------tgaattaatgtgt-caaatatttaatacaGTGACCACCTACCCTGAGTTCTCTGTGTGT-----------------------TTGCTTGCTCGTTCGCTGGGGCCCAGC------------------TTCACGCCT--------TCACCTTGCCGTCTGGCTGATG-CGGAAAATCCCATTTTCTTTATTTACACATCTGTCACAAA-------------------------------------------------GAAAGAGCTGCTACAAGGAAGGGCATGCAAAGCTCAGGTGTGAA--------GGCACAGATAT-CAGGA------CAGGATCCTGGGGAGGAAGACCAGGA----GGGGTACCTCT-GCCGGGAGCACTTCAGGGAGCAGAGGTACCCCAAGG---------------GCAGAGC---GGGGCACCCAACGCTGGGTCCCTCTTCCTCTCACAGATGCCAGGTG---------------------------------------CAGAGTTGGGTAGATTTCAGGCAGAACGAC--------AAGAGCA--------CAGG------TGAGTATCTTCACTCACTCGGACTCGTATTTCTCAGTGTGAGAAGTTCACATTGTCCT---------------------------------------------------------------------TCTGGGTCCAGGTTGCACGTGGGGAGCATGGCCAGCATTAGCTTGTTCTCAAGGACCCA---GCGCACCTGTTTCTGAATGAGGCCATGCCGCATCATGGCTAAGACCTCATAG-TTGCACAAGGGTG-----GCTGCGTAACCTCGGCTGCGTGACCTCAGTTGCCCAGACAACCCTCACTTCCACCAAAGATGAAGACGCTGTGACCACAGGAGGCACCTCCTGCCTGTCTTGGAGTCCGGGAATGACCTCGGTGACAGGATATC--TGCATGTCCTCCTTAGGGGTGGGGGGGCGGGGCCCTGGACACTACATCATTTAAAAAGACCCCCCCCCCCCCCAGTAACGCCAGTAAAAATAAA--GGAACACA------ATCCTTGGAAGAACCCAGGTTTGGGGGCTTCGGATGTGTATCAGCATCATACAGACA--TGTGTCTGTCTGTG--GTTTTGAACATCCAACATTTTA a score=49779 s hg19.chr6_ssto_hap7 1451513 2249 + 4928567 ctacccttttcagaa----agccatcccccactcatcctctccttccaggctgggctatgccccttcccctgaactcccataatgctggggttggacttcccgtaacacccaccacactgtgctataatttcctctttatgtttctctgtcttcccaagagctctttcagatatagagcaggttttttttttctctacattttcaagtcaccagtggccaccacactgcttggttcatagttaacacaaactaaatggttctagagaatgTGATTACATGAACTCTAACATTATTGgaagaaaacaagatgaaaagaggtgagatgccttgtttaaagtcatacaactggttgac---aggctggttcaagaacccaggtcttctgacttcaaatccagtgctctttctatgcagctacttctgtgccaAGCACGGATGGTGGTGAGCAGAACTGGCAGCAGCCTGAGTCCCCAGGTACCCTGGCCATCCACTGGGCATTGGGGAAAGGACTTGATCAGTAGATTGAGAGTCCTCTCTTCTATCCCTCACCACCCGGCCCCATCCCATCTTCTAAAGCAGTC-ATTTCTATTCCAAGTCATCCAGGTGATTCAGCCAGGGATCAAGTCCACATGGTACTTGGGTTGATATGAGTCCTGTACTTAGAGGAGAGTAGGTAACTGCTCCTTCTCAGGAGCTCAGGGAGAAACTGGACCCTCGGCCCCAGAGCCCAAAGAAGGGAATGACCTTCCTAGTGAAGGAGGCAGTGAAGGTGTAGATGGGCTCTCGGGTGACAGCGTTGGTGAAGGTCACCCAGCCCACCTCATAGTCAAGAGACACCCTCACCTGCCGGGGCTGCTCCTTCAGGGTCAGCCGTGTGGGGAAGGAGCCCAGAGCCGAGACGAAGCCCCAAGCCAGCCTCACAGCCCACACCCCCTCCTCTGGCCGCAGCCGAAGCTCCCCCTTCCGCTGCACATCCTCGCTCACCACGCCCACGGTGCAGCTGCCCCCATGGGCCAGGTCTATACTCACCACCCACGTGTGTCTCCCCCCTGTGATGCCAGTGTGGGCCAGAACACAGGTGGCCCGGTCAAAACGCTGGGGGTTGTCTGGTGAGTTCTGCCATTTGTAGGAGAACTGAGCTCGCTGGTGGTCCTCGGACAAGAGGAGCTTGGGGTGGGAAGTCTGAGGGTCTAGAGAAATGTGAGCTGTGGGGATAACCAAAAGGGACA--GATGTCAGCAGACATGCTATTACCTCCAAGGAAGGCATAGAAACTCCCCCTGGGCCCCTCCTGTTAGTGTTATTATTACCAAAAACATGTATAGTGCCTAcgtgggccaacagtgtggaaccacctgggaacttgttagatatacgctctcagaatctgcatccta-----acaagatgcccaggtgatttgcacaca------ggtaaagcctgaaaagcCTGCCTCAGAGGATGTGAAAGCTCTCGTTTAGTTCAGTGTGGTCCTCGGGAAAGCTCTTCTGCTCACCGCAAGTTGGTTGGTTTCCAAAGCTGTGCGTGCCAGCTTGGATCTCCTGGGGCTGATATACCACATTCTCCCCTCCTCCCATCTCTATCCCACAGTGCAGCGACATTTCTCCCTTCAGTCCAAACTTCATGATTCCTCCCTGTTTTCCTCCCAGGGCACTGGT-GACTCATTTACAGTCTTCCCTCCTGGCAGGCTCTCTGGC------TCACCCCTGGGTTATTCACTCTGCCTcagtaattctgaaactgtcagagtctgaggaccactttttaccaccaaaaactgctgcagagccttgcgttttgttacttttagtattcataaattgagaaGCTTCCATAAATTTAGGTCCATCTGTG-----GGTTAGAGAACCCCCTCCAACAACTCCGTGACTCCCA-----GGGTCTTAGGCTGGTTGATTGAGAAATGACAGCCTTGAAGGGGTCCATTCTGTTCATTTTTTTCCCACCCACAGGCCGCCCTCCTTCTGTCATCTGTGAAATGACATCTGAGAGGAAGCAGGGGTTCCTTACGTTCTAAAGAG-GTGATTATAAACCCAGATCAAAGTCCCCTTTATCCAGAAAGCATTCCCAGATGGACTTTATCCCATTCTGCATTAATCTTTCTATCTACTCGACATGCGCA---GATCAGGATGTGAGCTTCATACCACGAATGTAGTATGTGTATGTGCTTGTCCTTTCTTCATGTTTCTCCTGAGAGCCTTACAAACAATGTGACACACACACACACACAACCt s canFam2.chr35 29368576 1945 + 29542582 CTCTCTTACTCAGAACAACACCCCTCCCACCCCCCTACCCCCCCACCCTGCCATACTGGGCCCCTCCTGCTGAGCTCCC-TGACCCCAGGGC--AACCTCT------GCCCAGCACC---TGTTATGCCCCTGTCCGTGACTCCCTCTGGACACCCAACACCCAACACA-------------------TTTCCTTTCCGTTTTCACACCACCAGGAGCTCCCATCCTGCTTGGCTCATGGTCG-CACACAATAAATGTTTCTTGAAGGTACAAGTGAGTGaactctcatttttctggaagaagacataatgaagataggtg-----ccttgcctaaggtcacacagTTGGTGGGCCATAGGCTGGCCC--------------TCTGGCTCCTAACCCAGGACGCTCATCTAGTGGCTGCTCCTGCTCCAC-TGGGGATGGTGGTGAGGATG-CTGGCAG--GCCCGCATCCCTGGAC-CCCCAGCCGTGCCCTGG--------------------TGGGCAGACCAGGGATCACC--------------CCAGCTGGTCCTTGTCAAGTCCTGAGTGTGCTCTGTTTCTGTCCCTG--CCCCCAGGTGGCACAG--GGGGTGTGAGTCTGAGTAGCCCTC------CTCCGAGCCAAGTACCTGCCT-----CAGGTGACTGCACCTTCTCAGGGGCTCAGGGAGAAGCTGGACCCTCGGCCCCAGAGCCCGAAGAAGGGAAAGACCTTTTGGGTGAAGGACGTTGTGAAGGTATAGATGGGCTCCTGGCTGACGGCGTTGACAAAGGTCACCCAGCCCACCTCGTAGTCGAGGGTCACACGCACCTGGCGGGGCTGCTCCTGCAGGGCCAGTCTCATGGGGAAGGAGCCCAGGGCAGAGACAAAGCCCCAGGCCAGCCTCACGGCCCACACGCCTTCCTCAGGCCGCAGCTTCAGCTCCCCCTTGCGCTTCACATCCTCTCGCACCACGCCCACCGTGCAGCTGCCCCCGTGGGCCAGGTCCACCATCACCATCCATGTGTGTCTCCCCTCTGTGAAGCCGCCGTGCGCCAGGACGCAGGTCGCCCGGTCGAAACGCTGGCTGTTGTCTGGTGAGTTCTGCCATTTGTAGGAGAACTGAGCCCGTCGGTGGTCCTCAGACAGGAGGAGCTTGGGGTGTGATGTCTGTGGGTCTAGGGAAATGGGAGCTGTGCAAA-AACCGAGAGGGACATGGATGCC----------------------AGGAAG------------CCCGTGAGC----CCTGT--GTCTCGCACCTGCCAGTGACTGGCAGAGT--CCGGGTGGCACAGCAGGACGGGTTCACCTGGGCACCTGCTAGGCATACCGGAGCTGACTCCACCTCAGACCACCCCAAACAGTCCGGGCCATTTGCGCTCACTGCGGACTGGTGCTCACGCTGCCTGCCAC--GGGATGCCTTAGCTCCCCCATGTCCCACTGTCAGCTCTGGG----------TGGTCAC-----------------CCCAGGCCATACCTGCCTACTCTGG---CTTGTGGCTG-----CCAACACCCGTCTTCCCCCCATGTCCGACCTGAGATG-------------CCCTCCACTCCAAACCCCATGGCTCGTTCACGGTCTGCTCCCTGCCAGCTGTCAGGCTTGTCTGCAGGTTATCCCCATTGC-----CTCTGTCGGttttttttttttttttttttttttttGCCTCTGTCATTTTAAAGCCATCAGGGTC-------------ATACCTCAAGGGGCCTCCATAAACCCCTGCATTGTGTGGCTGTTACTGTCCTAGGGCCAAGA------CACAAA--GAAATCCACACATGCGCCCCGTCAGAGAAGCTCTTACAGCAGCGC--TGGCTCCCAGAGAGGGGTCTTTGGCTGACTG----------------------------------------TACCCTCCCATCC-----------------------CTGAGAAACTCCACCTGAGGGGA--CTGCAGTTCCCTAGGATCCCAACAGTGTGATC-TAATCGcagatcaaagttgcctcc-tccaggaagcccttcctgaTGGACCCTGACTTGTTCTG-ACAACACCTTCGCCCCGCCCATCATGTGCACATGATGGGGAGGAGGGCCTCTTGCCTGGTCAGGTGTGTATGGGTGGGGATG----------------------------------------------------ACACAGAGCCT a score=14536 s hg19.chr6_ssto_hap7 1453872 848 + 4928567 GTCATAGTGCAAATCCTGCAAAATTTTCTCTCCTTTCCGAGGACTTCTCATTCTCTCCCATCCTGACATAGGC-TCCTTACCTGGCTCATAGTCCAACTCAAAGCATAGTTTTTCTGTAAAGAAAAT--AAACCAGGATGAGATTTTATTAGTCTTACAAAACCATCAGACACTTAATGATGAGAAAACTGAGGCCAAGAAGAGGGAAGGGACAAGAAGAAGAATGTAAGCTGGAATCCTCTAGACcagtggttccaagcttgcatcagaatcatctggagctcttgttaaaac-----acatctgtttcagattcaggtgctctggggtggagctgaacatctgtatttctaacaatttcctgggcaatgcagctgctgctgctggtgggagccccactGCCCTAGCCCTGATCAAAcagggaccatgactgccttgctcacctctgtacccgcagagcccaggacatagtaaatgctcaagaaatatctgcttagtgaatagaGAAATGGGTTCATTTATTTATTATTCCACTTGGAAATAATTTTGGGGAGAGTCAAAGGTCAGCCTTTGATTAGAGTGAAATTTCCTTCACTGACAGGTCACTGGAAGTATTTGCAGGAAATGGAATTATGGGAAAAGTCCTTCTAGGGTGACATAACTGTGGGTGGGTCATTTCAAAATTG-GTGTCATCATTCATTCTGTCATGGTTAGTGAGGAGGTGGTTGGCAGAGAGCCA-----TGTCCCATTCCTGACTCTCATCCAAACCCTCCCCCACACCCTACCACCACTCCCTGTTCCGGAAAAGGAAGTGGAGCACAGTCCCCGTAGGACCGTCTAACTCTGAGC--CAGACTAAC s canFam2.chr35 29370521 718 + 29542582 GCCCCAGAGC----CCTGAGAAGTTT--------------GGATTTCTTGCTCCCGCGCACCCTGGCATAGGTAGGCTCACCTGGCTCATAGTCCAGCTCGAAGCAGAGTTTCTCTGTAAAGAGGATACAGAAAAGGATGAGACCTCCTCAGTCTTACAAAACGAAAAAACCTTTACTGATGAGAAAACTGATCCC---TTGAGGGAAGGGACGGAGAGGGCAGAGCCAG-----GCCCTCCAGA-CAGGGGTTCTGGGCTTGAGCTTGTATCA-CTG----TCCTGGGAACACCTGCAACACTCATGTCTGCTTCAGTGGCT----------GCCGTGCATC-----------------CCTGGGGCAGGCAGGTGGTGTCCTTGA--------CCCCTGCTC--GGCCT-------CAGGGA------------TGTGCA-CTCTGTA-ACACGGA------GACAGAACAAATGCTCCAGAAAC-TCTACCAGATGAATAG----------------ATTTCTTATCCTTCTTGGAAATAAGTCTTGGAA----CAAAGGTCAG-CTTGGATGATAGTAAAATGACCTTCCATGCCGGACCGCGGGGGATACTTGCAGG-ACTGGGAGTGCATGGAGGCCTCTTCCGGGGCCACAGTTCTGTGGGTGGGCTCTTTAGAAATGACCCAACGCCATTCATGATGTCACAGTGTGT---------GCTGGCAGAGAGCCACTGCTTGACTCATTTC---CTGGCATTCACAGCCTT-------TCCTACCACCA---GCTGTTCTAGGAAAGTGGGAAGAGC-----CCTTGCAGGGACCTCTCACTTGTAGCAGCAGACAGAT a score=21800 s hg19.chr6_ssto_hap7 1454720 924 + 4928567 AGAAAGAAAGTGAGAAGGAAGGAGGGAC---------------------------------------------------------------------GAGCC--------------------------------------------------------------------------------AGATACCACAGGGTCAAGATAAATACTGTTGTTGGCTATTAATTAACAATGTTCATCATCAAAAACTTATCACATATTACAAATGT------------TGCTGTGGGATTTTTTAACTTATTAAGAATGATA--TATTGTTAATCATTATCTTTCATATTGCTTAATGACCACTAATCAGATTTGT-----TGAATTATTTTAAAATCAGTTTAACTTTTTCACCAGAAATAttcacctttattctctttcttca-ttgtcacaatatcctaataggcagattttataaaaatctgcaaataaggaaatcaaggcacaggaaggaataaggcttgccaaagtcacacctttcagcagtggagcgtggaggccactcctaaacccaggcttcatggccacctgcgctctGTGGAGGCCTGGGGTTCTCTTACCCAGAAACATCTTCATCTCCCTCTGCAGCGGGAGGGCCTGCTGGGGAAAGTCCCGAATCCTCTGGCCCAGCTCTGGCGACACAGCCACCGGTTTCCGGCACTTTCTGGTTTCACATCTAGGGGCACAGAAATGGCTGGGTCTGGGAATTATCATCCTTAATAATGTCTCCAGACTCAGCTGGTCATCTTCTAATAGGGCATGATGGCGCTAGTTCCTGCAGGCAGACGTACTTCCTCTAGGATGAATCCCACTGCCCATTTTTGGGCATCTATGGATATACCTG---AGAAGGCATTTGGGTATATAGAGGTTTATATGTAAATTTGTATCCTTAAGTGAGAATGTTATATACCTGTGTGGCAATAACTAGGCATGCAGTACATGTATGTATATTTATATGGAAAAAGAAAAGAGAGAAACTA----TATTGCTTACCTTATTAGAGTGCTTCTGATGTCCTAGGAGAAA--GAGATACCAGAAATTCA s canFam2.chr35 29371341 979 + 29542582 agagagagagagaggagagagGAGGGGCAAGGGGAGGAGGGAGGATGGGGCTTGGGGCTTGAGCTGTCCCAAGgggagagggggagggagagggagagagccaaggaaagtgagagagggagggggagggagaaggacaaggaggagggggaggggaggggagaaggaggggaagagACATAAGCTGCCACAAGGCCAAGAGAAATGCTGTTCCTGGTT----ATTAACATTGTTCATCATCAGAAA--TGTCATGTATTATAGGTGTATAATAGATAGATTTTGT-AGATTTTGTAAATCGTTGAGAATGGCAAGTTTTGTTAATCATTATTTTTGATGTTGTTCAATGTCAAGGGATCAGATTTATTTGTGTGATTATTTTTCATATCAGTTAAATATTTT---CTGAAATCTTCGTCTTTATTCTC--TCTTCACTTATCGCATGATCCTGACATGCGGATTTTATAAAGATGTA-----AAGGGAAGGAGGGAGTGGGAAGGGAACTAGC---CCAAAGTCCC------------TGCAGCTTGG-----GCTGCTGTGCCCGGG--------------GCACT--------------GGACCTCTTACCCAGAAACGTCGTCACCTCCCTGCGCAGTGGCAGGACCCGCTGGGGGAAGTCCCGAATTCTCTGGCCCAGCTCCTGAGACACAGCCTCTGGCTTTCGGCACTTTCTGGTTTCACTCCTA-GGGTACAGGAAGAGCAGGGTTTGGGAACCCCCCCCCTTCGCGATGTCCCCAGACTCAGCT---------------GGGCACAGAGGTCCCCGCTCCCACAGGCGGACATACTTCCTCTGGGATGGG-CCCACCACCCACACCTGGTCCACTGCTGGCAGATATGGTTGGAGGGCAT---------GAGGGGTTCAGGTGGA---------CCATGAGCCTGGGTGTGACA-----------------------ATGCCATCGGTGTGTGGGCAGCGACATGTGCCAAGGTATGCGTGAGGATAGGCGTGTGGCTCACCTTATCAGAGTGCTTCTGACGCCCTAGGAGAAATGGGGGGAGCAGGAGTTCA a score=83286 s hg19.chr6_ssto_hap7 1455960 3645 + 4928567 GAAAAGACAAAATATATTTCTAGCCCTGGACAGGAAAAGGATACCAGATG----catagagtcacagagcattaggactcacccatctctgtggatca--gagcccaaagcctttattttttagataaagatggtgaagtgaccttcccctgctcactggagg-caaagtaagtctcataccaaggtctcctgtttctcagtccTAAGAG----------------CATCATTCTAAGTCATGCTGCCTTTCCAATACTTTGTGGGGACCCCAATACCTCTCCTCCAGTGTGAGGAAGTGAAATAGACCAGGACAAACTTCCTG--ACTGGTGGTTGGTGACATTTAGGTTATAGAGAATGGTTTGCAACTTACTTAATACTttttcaaagtgctactttcacttccatcttactgttggatcctcacaaaagccctgtgaaatatttaaggaaagtatcttccctatttggcagatggtgggacggagaggtggagaCCAGAGAGCAAAAAGTGACCAGGGAACTCTTGGAAAAGCATGAACTAGAATTGAGACTTTCTGGTCCTCTGACCCACCTCCCATCTGGGATACAGAGATGTGTGAGTCAGGGAGACATGGCTTAGGCAA-GACAAAGATGCAAGAGTCACAGGACAGCACAGGTGGGGCAGGGTTCCGGTTCAGGCCTCACCGTCAGGAGCTCCCTTGCTGGCCTCTCATTCTTCTCCTCCAGTTCTTCAATAAGAGCACTAAACCGGCAGATCTCCCCAGCAACCAGCAAATCAAATTCATCCCGTTGCCTCAAGATGTCCCCATCCTGGCTCTCCAATTGTGCTAAGAGGATGCTCTGCTGTTCCTCTAGAAACTTCCTCAGGTGTGCGAACTCAGAAATCACCTGTTGTCTCTTGGTGGACACCTGAGTCTGAGGGGGCAGGAGGCAAGCCCAAGAGAAAGTT-TGCTTCCTCCTTCTCCC-----TCTGCTCCTCTTCCTCCCCTGTC---CCCAGGT------------------------AGATCTGGAACT-------------GTGTC--------ATGGTTTCCTTTTCACTTGTCATCCCATTTCGAGAAGCAAGACTCACAGTGTTGTCTCAGCACCATCTGCTGCAGCTTCTAAAAG-----GGGTAGGGCTTACAGGAGGTGTAGGAGGAGGTGGTGGGGACACCCTACCTCctgtcttgtatgaaaagcacattatgtgcacagccctgagctactttacagtcacaatctcatttaatgcttacagtaattcaatgaggtcatgatgatttttactctccattttacagataagtaaactgaagttggagagttgcttgaggtcataga----gttagtgtcagagtcaggatttaaactcataataacttcaaagcccTATAATCTATGTTGCCTCAGTTTCAGGAAGACACTGGACCCTGAGGAAGGGGAGGAACCTGGGGAAGGGGTGATGACTTACCAGGAGGACTTGCATCCTTTTATTTTCTCTTGACTGGATTTCTTGAATCTCCTCTCTCTCTTTTCTTAGACATTTAAGACACTTATGGATTTGTTCCTGGGGAGAAGGAACATAAAATACTCAAGATGGAAAATGATTTGTTCAGGTTTGTCTGGTCATCTGACCCTCTGCCTCCAGGAATGAAATGGCCCCAGGAGAGGAGTCCCTTCCTTAGCTGACAATCCCCGAGCCTTCACCACCCTGACAGCTTACTCCCTTTGGGTCTTCTTCCTCTTGATTTG-TCTCTAAGA---------CTTTGGATCAGGACTTTCCCCCTTTATCCTGTGCCATTAGAGGCTGTGACTTGGTTTTCCCACTTGAGTCTT----TCTTCAGGTTTAACATTCTATTGTGTTTTGCTTCAGGTAAGTGGTATCTGGGGTCTGTACTGAGTTTGATATGCCCCGCACTGAAATCATTCTGAGTTTCCGACTCATCCCAAAGGAACATGTGTAAATAACAACCCTCCCTTGTTACTGAAATCAATTATCTGTGTATGACTCCAGAGGGGAGAAGAAACTTGGGTAATGTAAAAATAATTGATAAATTGTTTTCAAAATTATTTGCTCCAGAATAGAGTTAGGAACAGGTACACACACG-------ATAAATATGTGTGTTCAAAGATATATTAGAATTCTCACTATCAACTGCTAATTAACTAATTAAGACATCCACACA---CAGACTTGTACTAAAACATAATTCATAAGCACAATGCATAAACAACTAAAACCAGCACACATTCATTTAATGACAGATAAAATGGCATGCCACATACATTTACCCAGCCTGAATATATGTAAACACGAATTTATTCACAAACAGGAGCTCTCAGTTacacttacacactcaaatatatacatactcagactcccatccaaacacaccagacacacttctaaacatgcaaacattaacacata-tacacacTGTTTGTACAAT-CATTCCCTCAAATG----CAAACTTCAGACACACCTGATCCATGGCACAGACACACACACTCATGTTTGGTCactcattcattcaacaagtacttgttgaactcccgttatctgttggccacAAGTGAACACAGAACACACTCAAAAAAACATAAAACATAAACACAATTTTCCATGCCTGGGTCTATTGCCTGGGTGATCATGTAAGTAAGGAGAAAGAATTTGGCCTCCGGGTGGCCTAAATAATCCACAACTCTGCTGTTTCTCTTAGTCCAGTCCAGTCCACCCTGGGATCCCCCAGTTCCCCTTTCCTACCCTATAGGGAGCCGCTGCATCCTCCAGGAAGCGCATGGTGTGGGTAGCGTGCTCCCCAGCCTCCCGGCACACCACGCACAACTGCATCTCATCATCCTCACAGAAGAAGTAGATCTTCTCTCCGTGCTCTTGGCAGACATCCTCCTCTCCCAAACCCAGTGTGGACACCAGCTGGAGGCGCTCAATGTTCTCCACCACGTTAGCCAGCTGCCAGTTGGGCCGGAAGCTCCCAGGACGGAAGGGTTCTTTGCAGAGTGGGCAAGTAGGGGACTCCTCCAGGTCTGGGCCTGGTATCTCACAGTAGCGGGTAAGGCAGGCCCGGCAGAAGTTGTGGCCGCAGTCGATAGTGACCGGCTCCCTCAGGGTACCCTGACAGATGGGGCAGTTGACTTCATCTGCCAGGCTGGTCACAGAGGCAGCAGAGGCCATGCTGGTCCTGCTGCTATGGCTTCCTCAAGGCCACTCTCTCTGCTTGGCCACGGGGGAAGGGCTGGGTCACACACTCACACACCCACACATGCACATGGCTGGACAC---AGGCACATACTAAATATGCACCAGCACCCAT-ATCGT-CACACACTTGCAT---CTCTGGCA-GCCAGGG---TTCTATTCTCCTGCCAACAGCAGAGATGGGAAATAGCAGAGGAGAGGAAGGAAGAGGGGCTCACAGCATTTCAGAGGTGACCTTAGATGACCATAACCAGG--GGCTGGCCATTCCTTTCTGCCCATCCAG--------AGACACTCACAGTAGAAGGAAAGTGGTGATATGTCAGCTGTCCACTGTCAGAAGAAATA----TTCTTTTGGGGGCAAGTGGGAGACTGGGTCACAGAGTGGAGATGCCATTCCAGCCTTTCTGCCATATGGCCAGCTGTCTCCAAAGAGATTGGAGGTATCAGCCAGCCCAGGGCTTGCCCATCAGCAAGCAGGAGAGTGTGGGGGCTCAGATAAGGTCCTTGTGC s canFam2.chr35 29372320 3335 + 29542582 GAGAACACAAA-------------CCTGG---------GGTTCCCATATGGGGtcctggagtcccagaattgtagggttggcaaggcgtccgggatcatggaggccaagccctttatttcat-ggtccatgcagtgaagtgacttgcac--aCCTGCTGGAGGCCAAGGCGCATCCCATG-CGGGTCCCCCCACACCTCCATCCAGTGAACCACGAGTGGGCGCCCCCCCACCCCATGTCACGCCGCCATTCCCAGGCCTTGCTGGGACCCTCATATCGTCCCTCCAG-GGAAGGAGATGACATGCACCGGGA-GAAGTGCCTGCCACTGGTGGCCCGTGAT------GCAGAATAGCATGCCTTGGAAATAGCTGGCAATGTTTTCAAAGTGCTACTTTGTACTGTATTTTTCCTTTGGACCCTCCCCAAA-CCCTGAGAGGTTGATAAGGACGGTGTCCTCCCTGTTTTATGGATGGTGGGAGGGACAGCCAGAGCCCAGGG---ACAGCGTGGCTGGGGGA------------------------------------------------------CCGTCCAGGAGGCAGGGACATGTGCGTGGAGGGGGCA--GCTGGGACCGTGACGGTGCTGGAAGGG-------------CGGGCAGGGCGGG---------CGGGGCTCACCGTCAGCAGCTCCCTGGCGGGCCTCCCCAGCTTCTCCTCCAGCTCGGCCACCAGGGTGCTAAACCGGCAGATCTCCTCACTGACCAGGGCGTCAAAGACATCCCGTTGCTTCAGGATGTCGCCATCCAGCTTCTCCAGCTCAGCTAAAAGGACGCTCTGCTGCTCCTCCAGGAACTGACTCAGATGTGCAAACTCGAAAATCACTTTTTGTCTTTTGGTGGCCACCTGGCACTGGGCAGGGTGGAGG-----CCAGGAGGGAGTTATGCCTCCTCCTCCCCCCTTCCTTCTGCCACCCCCCCGCCCTTGCCGGGCCCAGGTTCACGTCCTCCACGTTTCAGTGGAAAATCCGAGCCTCCAGCAGCCCCAGGTGCCCGGACAGAATGGCATCCCCTCCACCCACCAAGCTTCTTCTGGGGGCTGACTGCCCGGCGTGGCCCCAGC-CCCTCTGTGGGAGCTTCCAGAAGCCTGTGGCTCAGGC---CGGGAGCTGCC-CAGGAGACAGTGGGGACAGCACACCTCTCGTCTTGCACGA-------------------------GGTTTGTTTAGAGGCACAAACACACTACACA-TTACAGTGACTTGGGGAGG--AGGGAGACTTGTAGTGTCTGCTTCGCTGC----AATACGGAGGCCAGAGACTGGCTTGAGGTCACAAAGCTGGTTACTGTGGGAGCCCAGGCACGACCTCAGAGTGACCTCTCAGCCCCACA--------------TGCTCCGCGGGGACATGG---------------------TCCAGGGAAGGGACAGCGACCTACTAGGAGGACTTGTATCCGCTGGTTTTCTCTCGACTGGATTCTTTGAATCTCCTCTCTCTCTCTTCTCAGACACTCAAGACACTTCTGTATTTGCTCCTGGAGGGACAGAGTAGGAAAC-------------AATGGCTTGTGCATGGGGGT--------------CTCTGCCTCTGGGGTGGACA--GCCCTGAGGACGGGACCCCTGCCCACACTGACTGTGCC--AGTCCT-AACGTCCTGGCAGGCTGCTCTCCCCAGCTCTCTTCCTTCCAGCTTTGCTCTCTGGAAACGCTGATCCCCTGAGCCCTGAGCCGTCCCCTCCGCCCAG-GCCGGCACAAGCTGCTACTCAGTTTCCCCACCCGCGCCCTGCTGTCTTCACGCTGAAGACCCTAATTAGATCTG----------------TTTGGGCCATGTTTGGAGCCTGACACGCCCTTCTCTGAAAGCACCCCAACTTTCTGACATGTCTCAGAAG-GCATGCGTGCA-AACAGTCCTCTCTTGTGACAAGAATC---------TGTCAGGTTCCAGATGGGAGGAGAGGCTTACATAATATTAAAGTGGTCAATACACTGTTTTAAAAACTGTCCACTCTAGA--AGAGTCAGGATCAGGGACAGATGCATGGAGGTCCACATAGGGGCATCCAGAGATACCT----GCCCTCACCGTCAAATGCTAGTGAACTAAC----ATGTCCAGACAGACCCCACTTGTATCA-------------CAGCGCAGTGAGTACATGACTAAGAGGAGCACG----TGGCTGATGATAGACACAATTGCACAT----TATGTTTCCCCTCCGTGA----TTTTGAACGCTGAAGTATCCACAAACACGAGC--------------------------ACACACATGCTC-----CCCACCCCATGACACCAAATGCACG--CAACTGGGTGAACGTCCATGCACACTCCCTGCTGTTTGTGCAGTCCACCCCCAGACATGACTCCAACATCCTCAGACCCCTGACCCACTG----------------------TGGTCACTCAACCATTCCACA---CCCTGCTGAGCTTCTG-TATGTGCTGGCCATCTGTGAGC----AACAC-----AGAGAGCCCTGAGCATACATGCGG-TCCCCACCCCTGGGTCAGCTGCCTGAG-------GAGAGGCAGGAAGGAGGGCGTGCC------------------------------------------------------TGCGCCCAGGGACCCCCAGTGGCCCGTGTCCTACCCTGTAGGGCCCTGCTGCCTCGTCCAGGAAGCGCACGGTGTGGGCCTGGTGCTCCTGGGCCTCCCGGCACACCACACACAACTGCGCCTCATCGTCCTCACAGAAGAAGTAGATCTTCTCCCCATGCTCCTGGCAGACGTCCTCCTGGTCTGAGCCCAGCGTGGACACCAGCGTAAGGCGCTCAATATTCTCCACCACGCTGGCCAGCTGCCAGTTGGGCCGGAAGCCCCCCAGGCGGAAAGGCTCCTTGCATAGGGGGCAGTGGAGGGGCTCGTTGGGGTCAGGGCCCGGGATCTCACAGTAGCGGGTGAGGCAGGCCCGGCAGTAGTTGTGGCCGCAGTCAACGGTTACTGGCTCCCTTAGCGTGCCCTGGCAGATGGGGCAGCTGACTTCGTCGGCCAGGCTGCTCACAGATGC--CATGGTACCACCTGGCCCGG-------GAGGTCCTCACGGCCAGCGTCAGTGCGTGGCTG-AGGGGCAGGGCTGGGGGAGAGGAT-ACACAAACATGTGTGCACACACCCAGACACGAGGAGCACGTCTTAAATGCACA----TGCCTGTGGTCGTGCACACACTCACACTCACGCTTGCACACCAGGGTTCTTCTGTCCTCCTCCCTCAGGAACATGTGCACGCTGTC-------TGGGAGGGAGATGGGGCCACAGCATACCC------ACACGATGTGGCTACTCTCTGGGCGGCTGCGTGTGTCTTCCTGTCCATCCGTCCGTCCGCAGACA--TGCATTGGGAAGGACGGGGCAGTATCTCAGCCGCGCACCGTT-GAGGACATGGACCTTCCTCTGGATG--GGAGGGACAGTGGGTTGGGGAGCAGAGCCGCCACCCTGGCCCCCCTGCA--GCTGCCGGCTG--TGCGGGCAGATTGCAGGTATCAGCAGACCCAGGGCTGGCGGGTCTGCAGGTAGGGCAGCGTGCACTCCCAGATAAGGTGCCTGTGC a score=4045 s hg19.chr6_ssto_hap7 1459930 280 + 4928567 aggcacacaagtaagAAGGTGAGTGACCATAAATAATTTGCTGTCAGATCTG-TCTTCCGAGcaatgctattcaacataaacgcaaagtgagccacatatgcaatttaaaatttcctagtggccatataaaaatagtctaaacaggtgaaagtaattttaatgatgttattttatttagtcctatatttccaaaatattatcatttcaatatgtgatccatataaaaagtcattaataagatattttacattt-ttaaatttgtgaaaagcctttgaaatcc s canFam2.chr35 29375703 229 + 29542582 AGACACAC---------------------------ACTTGCACTCAGGTCTGAGCATCCTAGCCCTGTTGTCAAACAGAAACACAACGTGAGCCCTGGATTCAG-CTGAAGTTTGCTGGTAGCTATA---------TTTTACTaaatgaag------ttcattatcgtagtttatttagccc------cccaa---attatcacatcaccatgtgctcagtctaggaatgcatc-atgaaacattttgcatttgtcctaatggtgctatgtctttgagatcT a score=37222 s hg19.chr6_ssto_hap7 1460576 1809 + 4928567 cagcatgccgccattcagaccggccacatttcagtgctcagtagacacatgtggctggtggctcctgtattggacaAACTAGTTCCTGGGCTGCACTCGTGGCAGGAAGAGCAGAGATTGGATGGGAAGGGGAGGTAATAAAGTGATTAGAGTAAAAAGGGAGCAACCACAAGGGGCTAGGCTGATCACCCAGTGGGAGAATGGGGGAAGGCCTGGTTTTATCCACAGATGTGTGCATGGGTGAAGGACCGTGGCTGCAGATCTTGGTCTTGGCATGAG----GTgtgggaggagcgtagggctttaagccagga---gactggga-----------tcgtccttaacgtgatactttctagctttgtgacctttggaaagtcactttacatttggaaagtcagtttacatttctttctctgtaaaatgaaggtaataatgtttg-cctagagggttatta--aaattgaatgtagtaatataaaaatactaaacCCTAGATAAATGTGGTTG----------AAACTGATTATCTGACTAATCGTTTTCTAATGTGTATCAACATAAATCATTTGCATTATGGTTTCTTGCCTTCTCCCCGCTACAGTAAaaataaataaataaataaataaataaataaataaataaataaataaataaaATAGTCCAGTGTTACCCGAACCCCAAAGGGGACTGTTGTGCCAGGTGGTGGGGGATTTGGGACCGTAGGAGGGGCCACCATGGGCAGATGTGGTGAGGGAGGAAAGGAGAGCAGAAGAGGGGACCCGATGAGCAATCCTTACACCCTACCTGCAGTGTCGAAACAGCGTCCCGCCCACACACTTCCGGCAGAATCTCCCGAAGTCCACACCTCTCACTCCAGCCTGGACTTTGATGCTGTGGG-------CACGCCTCAGAGCCAGAAGTTTATGGCTCCCACCTGCTCAATCTGACAGGAAGCTTCTGCTCCCC-AGTTCTCCCCA-GCCACTGTGGTCTACAG-----ATTCCAGG-AAACCCATCCCCCTGTGACCTCATGGTGTGCTCTGTTC-------TCCACCCTAGGGACCAGAAGGAGCC--AGGAGTAAAGAACTGGCTTACTTGGCCGCCACTGGGAAATTCTGGGTAATTCGAGACGCCCTGGAATTTGGACCCACTCCGCTGATAGGTGGTGGCCAGGGTTC----------TAGGGAACA-CAAGAGGCGGAGCCAGGTGGCTTCCCTGTGCTGGCATTCTTGCctctctctctctttctctctctctgtctctcAGCCTTGCAGCCGTTTCCCTCTGCGATTCATGTAAGTGTGACTCGATTTCAGGGAAAGGGAACTCGCGTGGGCTGAG---GAGACCGGAGTGGACGGGCTGGGGAAGGCACCGTGATGCCCGCAACCCCGTCCCTGAAGGTGGTCCATGAGCTGCCTGCCTGTACCCTCTGTGCGGGGCCGCTGGAGGATGCGGTGACCATTCCCTGTGGACACACCTTCTGCCGGCTCTGCCTCCCCGCGCTCTCCCAGATGGGGGCCCAATCCTCGGGCAAGATCCTGCTCTGCCCGCTCTGCCAAGAGGAGGAGCAGGCAGAGACTCCCATGGCCCCTGTGCCCCTGGGCCCGCTGGGAGAAACTTACTGCGAGGAGCACGGCGAGAAGATCTACTTCTTCTGCGAGAACGATGCCGAGTTCCTCTGTGTGTTCTGCAGGGAGGGTCCCACGCACCAGGCGCACACCGTGGGGTTCCTGGACGAGGCCATTCAGCCCTACCGGGTAAGAAGTGTAGCTTTACCTAGGGCCTGTTTGGGGCAGGATGATGTCCTGTTAT---GAGGGGAGGAAATCGGGCGGGGATCTGGATGAAAGG s canFam2.chr35 29375932 1568 + 29542582 CAGCAGG----------AACCAGCCATG-------------------------------GGCCCTTGT-TTGGCCCATGAAGGTCA--------------GGTGGGGGGGTGGGGGGGTGGGTACAAAGAGGGTACACCGAA-CCACAGAGGTGAAGAGGTGGTGAAACCATGCAGC---ACTGATCGCTGGGTGCAGGACTGGGTG-----TTTGGCTTGTCCACAGATGCAGGGACAGGAATAGGACTGTGGCTGTGGGGCCTTCCGTGGGCATGGGGTCAGTGTGGGGAGAGCACAGGGCATGGGGACAGCATAGGGCTGGGAAGCTCAGAGACTCCTCTCCACCCTAGAGCTAGCTAGCCTCAC--TCTCTGG------------------------CCCTTCACATGCCTTCATCTGGAAAATGAACATCGTCCTAACTGTTCTAAAGGGTTCTTGCCAGATTGGCTGTAATAATATGAAAATACTAAGTTCTC-CTAAATATGCTTATTCTACCCTTGACCTTTTGGGCTGA------GTTTTCTACATTTCATTAACAGAAATCATTTGTATTATAATTTCTTGCCTTCTCCCACCTGAGGT-----------------------------TAAAGACTGAAATTAAAGTGCAGCGTGACCCAGCATCACCC-------------------TGTTTC---TGTTTGGGGTTCAGG------AGGCTGGGCCA-----GGCAGGTGGGGTGAGCCCCATAGGGAG-GCAGAGGAGGGGCCCTGGGG-----------------------------------------------------------------------------CGCCTCCCATGGCTGTCTGGACTTTGCCGCCGCAGGCACAGCTCACACCTCATAATCAG-AGCTCCTGGCTCCCACCTGCTC----------------CTTGCTCTCCGAACGCTCTCCACCCCACGGTGGTC-ACAGGAAGTGTTCCAGGAAAATCCATTTCCCTGTGACTTCATGGCACGCTGGGGGCCATGAAGTCCACCCTAGGGACCAGAAGGACATGGAGGAGTGGCGGATGGGCTGACCAGGCCACTGCTGGGAAGTGCTAGGTAATGGGAGCCATCCTGGAGTTTGAACCTACTCAGCTGAAGTGTGGTGGTCCTGGCTCAGCTCGGGCTCAGGAAATGTTAAGAGGTAGAGCTGGGTGGCATCCC--CACTGGGACT----------------TTCCTGTTGTCTTCTCTCTCAGCTACCCATGATGTTCCCTCCATGACTCACGCCAAAGTGAAT-GAGTTCAGGGAGAGAGGACTTCCATGGCCAGAGGCAGAGGCCTCCCTGGACAGGCTGGGG-AGGTACCATGATGCTTTCCAGCCCTTCCCGCCAGGAGACCCCTCAG-----------------------------------GGATGCAGTAATTGCCCTCTGTGGACATGCCCTCTGCTGGCCGTGCCTCCTCCTGCCCTCCCAGATGGGGGCCCAGCCATCCTGCGAGGTCCTGCTTTGTCCATGCTGCAAGAACCAGGAGCGCCCAAAGACACCCATGGTGCCAGTGCCACTGGGCCTGCTTGGAGACACATACTATGAGGAACATGGAGAGAAGATTTACTTCTTCTGTGAGACCGACACATAGCTCCTCTGTGTGCTCTTTTGGGAGGGTCCTGACCACCAGGGCCACACCAAGGGGGTCCTGGACGCAGCCATTCAGCCCTACTAGGTAAGGAGCAAGGCTTCCCCTTGGGCCTGCATGGGT--GGACTGTGTGCTGTCATCCACAGTGAAGGGAATGGGCCAAGGGTCTGGATGATGGG a score=2904 s hg19.chr6_ssto_hap7 1465369 134 + 4928567 CAGTCACCTCTATCCAC---CCATTCTTC---------TCCCCACAGGATCGTCTCAGGAGTCGACTGGAAGCTCTGAGCACGGAGAGAGATGAGATTGAGGATGTAAAGTGTCAAGAAGACCAGAAGCTTCAAGTGCTGCTGGTA s canFam2.chr35 168809 146 - 29542582 CAGAGACCCCCATGCACAAGCCATTGTTTCCTACTCTGTCCCTCCAGGAGCAAATACAGAAGTGTCTTGAGTGTCTGAGAAGAGAGAGAGAGGAGATTCAAAGAATCCAGTCGAGAGAAAACCAGCGGATACAAGTCCTCCTAGTA a score=4204 s hg19.chr6_ssto_hap7 1465527 263 + 4928567 TCCTTTGAAGGTTTTCTTAAGAGACTCTGGGGAAACCCGTTGGCTGGTATCTGTTTCCTGGCTGAAAAGAACTGACAAACTGTTCTCGTTCACCTTCCTGTGGCTGCACAAAGGCATTTGGG-------------ATCTCAGACCATGAGCAC-----------------------------------------------------TAGAAGTGGTTCTGATGTCTTGCAATCCAagatccatcttgtatatcacattttacagagcagaaaacttaggaccagaaaagcaat-gctcccaaggccacatagcaaagctgaagtt--catga s canFam2.chr35 29377783 311 + 29542582 TCTTTTGGGGGTTTTCTTATCAGACTCCGGGGAAGCTTGTTT-CTGGCA-CTTTTGCCCATTGGGAAAGA----------TATTCTC-TTCACTTCCCTACTTCTGCCCAAGGGCATCTGGGCCAAGGTTGTGGAGTCCCAGTCCCACATCACAGCTGGATGTGGTTCTTtttttatttttatttttattttatttttttatttttTGGATGTGGTTCTGATACACCG---TCCACAA-CCATCTTATCAGCCAC--CTTACAGAGCAGAGAAC--AGGTCTGGGAACGTGACCACTGCCAAGGCCACAGAGCCGAGGTCATGATGACATGG a score=56604 s hg19.chr6_ssto_hap7 1465790 2110 + 4928567 ggaacctggatttcttgacccttaattcattgttctttccatcctagtctgtttgccTGAACACACCACCTTCAGATGGGAAGCTTGGGGTCAAAAACATATGTTAGTGTCGGGATTCTAGTCCTGACTACAGGCTGACCTTGAGGAGAGTAGGCTGATGGTGTGGCTACATCTGGATCCCTCACGCCTCTCTTTTCATGCTATAAAGTTATGGAGGA-----ATCACAGTGTGAGGATTTCTGGTACCTTGACCA-AGGAG-AGAGTGTGGGGACAAAGCAACCTATCCACCATCCCTCAGCTCTCATCAACGTATGCCCTGTAGTTGGTGATTTCCACGGCTAAAACCAAAATTACACACTCTCCCACTAAGTTGTGTTGACTCCAATCACAACTTCCTTTTGCCTCTAAGAAATTATTACAGTCTTCCCCACCTAACTCTAAGAAGGCATAGTAGGGTTATGATGGTATTGTAGTTGTGGAAATATTTTTGAAAAGTTCAACATCATTCTGAGAGCATAATGTAGCATTATTATTAGAGTATCTAGCTAAGACAGTAGCACAGCCCTCATCATTGGTAAGTTCATCCTGAGACCTAACTACTTCTAGGCATATTAGTAAATGGAATGAGTCTTGGACCAGTTGCTCCCTATCCCTGTTAATCAATAATAAGTATATAGATGATCATCCTGGAAGCTATCTCTGA-------GCCCCTTCCTAACCATGTCTGCCT-----TTTATCCCTTGAAGACTCAGATCGAAAGCAAGAAGCATCAGGTGGAAACAGCTTTTGAGAGGCTGCAGCAGGAGCTGGAGCAGCAGCGATGTCTCCTGCTGGCCAGGCTGAGGGAGCTGGAGCAGCAGATTTGGAAGGAGAGGGA--TGAATATATCACAAAGGTCTCTGAGGAAGTCACCCGGCTTGGAGCCCAGGTCAAGGAGCTGGAGGAGAAGTGTCAGCAGCCAGCAAGTGAGCTTCTACAAGTGAGAGACACTTCACCACTTTGTAGGATAAGAGAGGGACTCCACGGGGAAGGGGG------TGGGCACCATGCTTTGGGCTGGAGAGAGGCAGGAAAGGGAAG----------------------------------------------TGG---AGAGAGGTTAACGGGGTGCAGATCCAGAGGGGCTGGAGACTTGCCCAAGTCATACACTGTGGTCATGTTAAggggtttagggtcagacagtcttggatttgaatgttggctcttccaattgtgtgacttgagtgagtctcttagcctctctaaacatggggacagcaatagcacctccctcataaagttattgcaaa-attataagaaacaatccataaaaaatgcttggcatgattcctgatatacagaaagaactcaataactggtgtctgctatGGTTATGAATATGTGATCCTGGCTCACATCAGGTCCAGCTGATAACTGAAGGCAGGCCCCTGCTCTCTACCACCTCCTAATCATTGCAGACACAACCCACCCCCACGATAAGGCTGAAACAGGGAAACCAGCACAAATGAACTGACTACAGAAACCCAAATTAGTAAGAAAA--------------------------CATGATGTAAAAGAACAATCTAATGAGTAGGTAATTAAACAGGACAACTCTCTGCAGAAGGAGAGTTTTGAGTTCATATTTTAAGGGAAAAGTGATGTACAGAATCCCTGACAGGAAGGACTTATGGAAACTAAATGTATGTTCTTGTCTTTCTTTTGCAGGATGTCAGAGTCAACCAGAGCAGGTAGGGCCCACTCCCCGGTCCTGCCTCCTTT---------------------------------------TACTCAACATCAAGACTGAATGGGAAGGGGCAGGGGCACTTACTGCCACCCACTTTGCCAGGAAAGCAAAGGCACTCTGGCAGACACACTGTCTCATTCAACTGTgcacaaacagtccaaactcactaaagatttgcgttctaaaggttcatttttaaattgattggttggtattggggacacatttt----ttcccctagaagtgaagttataaataataatcatgtttttaggttgatccaggaacatttatttaatctatgaAATTATTAGTACTTGAGTCAGTATCTAACACCATTTAAAATGTAATTTAAAGGGGGAATACTTTCTGTAGACTATGATAAGCATGGAAACCAGGAATACCAGCCTGTTCTTTCATT s canFam2.chr35 29378300 2040 + 29542582 AGGACCTGGGTCTCTTGACC--TGGGCCGCTGTTC---CCATCCCAGTCTGTTTGCTGGGAAGCACTGCCTTCAGATGGGAAGTTC-----------------------TCTGG--TCTAGTCCTGATCTGAGGCCGGCCCTGAGCACTGTGGGTGAGTGCTGTGGCTC--TCTGGCTCACTGCCATCTCTATTTCTGAGCCACATGGCTACCCAGGAGAGACATTGCAGTAAGAGAATCCCTGGGGCACTGACCACAGGAGTAGAGTGTGGGACCAGGAAAAGACCTCCAGCGGTC-TCTGCTCCCTTCAAAGTATGCCATGCAGAAGGCAACCTTGGGGGCTGAGAGCAG--TGCCAAGCTCTCC---------GTGACAGCTCTGACCACAGCTTTCTTTTGCTTC------ATGGCTCCCTGATTAGTGACCTGGCTTGAGGGAAG--------------GGTGGCCTTGGAGATGAGGAAG----------------------GCTCTGCAGATGCACGGTGGCATTGTTAC----ATGTCTAGGTCCAATGAGAGCGGAGCCCGCATTACGGGTGAGGTTATTCTGAGACCTGTCTGCCTC----CACCTCAGTATGTGAGA--------GAGCTGGTTACTCCCTGTC--------TGAATAGTGAATATATAGGTGATCTTCCTGACACCAATTTCTTACACTATGACCAGCTTCTGGCCATGTCTGTCTGTCTGTCTACCCCTTACAGACTCAGATTGACGGCAAGAAGCGGCAGGTAGCAGCAATGTTCGAGATGCTGCGGCAGGAGCTGGTGGAGCAGCAGGATGTCCTGGTGGCCCAGCTTAGGGAGCTGGAGCTGCAGATCTGGCAGGAGAGAGAGATGAATACATCTCAGAGGTCTCTGAGGAGGTCACCAGGCTCAGAGCCAAGGCCAAGGAGCTGGAG---AAGTGTCAGCAGCCGGCGAGTGCCCTGCTCCAGGTGAGA--CTGCCTACTGAGTCATGGGCTTGGGGAGGGTTTGCACAGG--AGGGGACACCCCTGAGGGCCAGAAGATG--CTGGGGAAAGGCAGGAGGGGGAAGCACAGGTTGTTTCTGGTGGGAAGAAAGTAGAGCAGTTGGGTTCCTTTGGCCCAGAGAGTTTACAGACACGCAGACCCAGGAAGGATGGA----TGGCCTGCTCACCCACTGTATCCACGTcaaggactttggagtcagagggcctcgggtttgagtgt-ggctctcccagccgtgtgaccttggtgagcctcgtgacccct--acccatgggggtaatcatagcatgtccctcacagagccgttgcagagatgataagaggcaatc-atgccaggtgcatagcgtgctccctggctcacagacagaactctgtaaacagcatctgttgtGATTCTCATCATCTTGTCGTGTTTCACATCAG-TCTGGCTGCTAACT--------------------CACCACCTCTCACACACCAGAGGCAGAACACATTTCCAAGAGGAGGCTAAGACAGAGAAGCCAGCTTATGTGACCTGA--GCAGAGTCCCAAGCTACTGTGGGAGTAGCTCAAGAGTACTCAAGAGTCCCTCACACTGTGA--GGACAGTGTGATGAATAGGAAATTAGGCAG-CCACAGCTCTGCAGGAGGAGC-CTGTGAGTCCCTATGTTAG-----------TGTGCAGAGTGTGCGGTGGGAAGGACAAGTGGATGCTGAGTGCATGTTCTG---TTTCTTTTGTAGGATGTCAGAGTCAACCAGAGCAGGTAGGGCCTTCTCTACAGTCCTGCCTCCTTTATGCCAGGAGTGTGCCCTCTGTCCTTGTCACCTCTGCTCCACTGAACACGGAGCCTCAAGGAGA--------GGGCACCCTCTTCC--CTGCCCCCACAGCAAGGCAAAATCATGTTcacacacacac------------acacacacacacaGCCTCCACT---TAAATGTTTGTGGTCTAGAG-TTCACTTTTAAACGGGTTGTTTGGTGCCAGGGATACATTTCCCCCTGCCCCCAGAGGTGAAGTTATAAACAATACTCATGTTTTTAGGCTGATGCAGGAACATCTGTTTGGTTCCTGAAATTATTGGTACCTGAATCAGTGTTGAACAGCAGGCGACATGTAGCTCCGAAGGGAGGTA--TCCTGCAG--------------------CGGGGAGACCAGCCTGTCCTTCTGGG a score=3984 s hg19.chr6_ssto_hap7 1468167 358 + 4928567 Ttagaggtttagatctagaagggcttggaggtcttccagtctgaggaa----gaaactgagacccag-ggggtgaagagtct--------tcaaggtaatgcagcaagtgtctaatgaggactgagctgggaccagaatcaggAGTTTTTTTCATTGCAATATATATTTTCGTTGATCCTTTTTTTTTCTTCCCTTCTAGCCTCTTTTCCTTTACAAATAGCAGCATAC-ACAAGGGTAGT----------TTAAGGC-----------TGTTTTCAAATGGTACCCTGTTGCCCTCTAGAGACCAAAAGGGGTAATGATCTCTGTCCCT--CAGCCCCTACAGAACCAAACATTCTCCTAAAGGGGCTTACCTCCAATTCTTGAGAAGTGATTA s canFam2.chr35 29380816 343 + 29542582 TTAGAGACATAGATGTGGAGGGCTCTGAGGGTCTTCTGGTTGGATAGATCCAGAAGCTGAGCCTCGGTAGGGGGCTGTGCCTGGTCACAGTCACAGTCATGCTGCAAGAG----AGGGGGGCAGAG----GAGCAGGAACAGAA----------CTGCCACGCGTGTCCTC------TCATCTCTTCTCTCCCCATC------CCCTTCCCTAGTAGTGAACAGCACCCCATTAGAACATTAAAACCTCCATTAAAACACCCCAGGTTGTTTTTTCCAGTGACACTGCACTGTCCTCTAGAGGC-AAGTGGGGTCATGACCTCTGCCCCTTGCGGCCTCCACAAACCCGGAC---------------------TCTAATCCTGAAAATAAGATTA a score=42326 s hg19.chr6_ssto_hap7 1468691 2739 + 4928567 GGAATTTGGACCTAACTGGTTACCAAACCTGTCTGCAGGTGTGAGATGAAGACTTTTGTGAGTCCTGAGGCCATTTCTCCTGACCTTGTCAAGAAGATCCGTGATTTCCACAGGAAAATACTCACCCTCCCAGAGATGATGAGGATGTTCTCAGGTAAAGGGGAAGGCGCCACAGTTTTCCCCAGTCCCATTAGCTGCCCTCCTGTCTTCCACCCATCTCCATCCTTCTCTGCCCTTGAAACCTGGCTCGAGACATCTTCCCTCCCCAGAGCCTTCCCTTAGTGATCTCAATTTATTCAGGGGCACTATTCCCAGAGCATCTCCTCCACTCCCTAAGGACAGGTGCAGGACTGAGAGTCCAGGAGGGTGAGGACCCTTCTCCTCCACTAGACCACA--GCAGAAGCCGAGTCTTCTGTCCTCATTTTCACATTGTACTCAAGTCACCTTGCCCCTGGGGGTGCCTATAAGAAGTAATAAGTCACAGATCTCTCTTTCTATTTCTGCTTCCCTCAGAAAACTTGGCGCATCATCTGGAAATAGATTCAGGTAAACAGCTTGGGATTTGGGGAGTCATTCTTCCATTCATCCATTCAATCCATGGcagcaaacagagcaataaaatgcatgaattctggagcttgattgcttgagttctcgattccagttcttgctagctctgagacactgggcaagttattaagcctctgtcccacaatattttcttcatcagtaaaatgaaaataaaagtact-gtacctgtcccataagtagctgtgaggacaaaataaattaatacatgcaaagagcttagtatattacctgac-tcatagtaagtgctcaattaatgtCATCTACTTGTGTAGATATTACTCGTTGAAAAATACTTAT-CAAGCCCTAGTTTTTTGAG----------AGCATTGTGCTGGGCTCTCTACTGATTTGAACAAAAAATGTGCAATTTTTTAAAAATCACATTTATTTTTAAATTGGTGCTTAATTTAGAAGTTGTTTCCATAAGCATCACCTCACTCACTCTGGTATAGGTAagtgcttttcaaacttaat--------atgcagaaacgtctcctagggatcctgttaaaatgcagattctgatttagtagggtgggatggggcccaatattctgcatttctaacaaa---cacccaggtggtggggatgctgctggtccctcccgctgcactttgagaagcaaATCCTTAACAGCACCACTTGCTGATTAGGTAGAAGGGCGGTTCAGAGAAGTGGCCCAATGGCAGGCTGCCCAAGTCCAGTACTCCTTCTGCCTCCCACGTGCGTTGCCTGCTCTAGGAACATCTGTGGTTGCCGCCCGCTGTTGATGTCTGCGCGCTCCTCCCTCTAGG---GGTCATCACTCTGGACCCTCAGACCGCCAGCCGGAGCCTGGTTCTCT-------CGGAAGACAGGAAGTCAGTGAGGTACACCCGGCAGAAGAAGAACCTGCCAGACAGCCCCCTGCGCTTCGACGGCCTCCCGGCGGTTCTGGGCTTCCCGGGCTTCTCCTCCGGGCGCCACCGCTGGCAGGTTGACCTGCAGCTGGGCGACGGCGGCGGCTGCACGGTGGGGGTG--GCCGGGGAGGGGGTGAGGAGGAAGGGAGAGATGGGACTCAGCGCC--GAGGACGGCGTCTGGGCCGTGATCATCTCGCACCAGCAGTGCTGGGCCAGCACCTCCCCGGGCACCGACCTGCCGCTGAGCGAGATCCCGCGCGGCGTGAGAGTCGCCCTGGACTACGAGGCGGGGCAGGTGACCCTCCACAACGCCCAGACCCAGGAGCCCATCTTCACCTTCACTGCCTCTTTCTCCGGCAAAGTCTTCCCTTTCTTTGCCGTCTGGAAAAAAGGTTCCTGCCTTACGCTGAAAGGCTGAAGTGGGGCGCGCGAAGGGCGGCGAAGCGGAGACGGCGGCTCTCCGGGATCCAGCTCCGCCCCTGGCCAGTGTGCGGCCCGGGGGCTCCCTGTGCCCGCGTGAGGCGAGAGAACAGGGGACTTGAGTCTCGAACAGCGGTTGTTTTTACTTTATTTATCTTAGGCCCTCAGCTCCCTGACGTCCTGAGCCTCCCTGTGACGCTCTGGCCTTCTCTGCACCTCAGAGTGCAGAACCACAGACGGCTTCGGCTGTGCCTAGGGCAACAGCCAACCTAGGAGCCAGCGGGCTTTCGGGGAAAAAAAAGAAAAAG-ACATCTAAAATAAAATGTTTAAACTGTTTC-AAAATAATTATCTTGGGAAAAATCAGGGTTTTGCTGGACTTGCACTAATT-----TGTACAGTTAACTTCGTACTTTGACACACACCTGAAGATGCCTCCACCTTTGTAGGGCTTAGGGCCTTTTTAT-CAGCCCTGGGTGGACCCCAGGGCCCCTTCCTTTCCCTTCCCTTCTGGTCATTTCTCTGGACTTGTAGAGAATGTCCTAAGAAAGTGTG--ACTCAC-AGACCTCTGGATTCCATGTGTCCAATTAGCGCTGATGGGACTGGAGAAAGGCTTAAATCCAATGGGATCTGCCTGTGTTGGCAATTTAGGGCCGAGATGGCTCGAGGGAGTAGATGCAGAGAGGAAGGGTGATGATCCCTCTGTGACCAAGACACAATCCTGTCCCTTCTTTTAGTCAGGATATCCCTGATGACAGACAGTGGGACAATCACCAGGCCCCATTGTTTAATAAAACGAGGCTTTTGCTCAGGTCTAACTAACCTCTCAAATATTTGTTATTACTGCAGTTATTATT s canFam2.chr35 29381159 2116 + 29542582 GGGACCTGG-------------------TTGTCCCTAGGTATGAGACAAAGACTTTTGTGAGTCCAGAGTTCATTTCTTCTGACCTTATCAAGAAAATCCGAGATCTGCACAGGAAGGTACTCCTCCTCCCAGAGATGCTGAGGACCTTCTCAGGTAA-----------CCACCG-----------CCTGCTACTTTCCCTTATGCCTCC-------------CCTCCCCTGCCTTTCCAGCCTG--TCCAGGTGTCTTCCCT-CCTGGAGCC-TCCCTTGGGGATCCGGCTCTGCTGGGAGGACTGGCACCCAGCACAGCTTCTCTACCTC----AGACAATCACTGTACTGAGTGTCCAGGCGGGTCTGG-----------CAACTGTGGCAGAAGGCACAGAGCAGGTGCCCTGTCC------TCACATGGGTCCAGGGCTGCCCT-------GGGGCACCTGTAAGAGATAACAAGTCACACATTGC----TCTGTTTCTGCTTCCCTCAGAAAACCCGGCACATCATCTGGAGACAGACTCAGGTAAATGGCTGGGGGCTCAAGGATCCATTCTGCCTTCCATCTGTTAGTTCCCAGGcagcaaacagagccgttacatacatggggtctgcagcctgactgctggg---ctctgttctagtgctggcaggtgatgagacactgggcaagccaggaaggcttt-ccttccagttctcacctc-----taaaatgga---aaatgcaccagtgccaaccccataagtaggcacgaga--ggaatgcatggatacatg-gaagagcttagtacagtacctggcaccacagtatgtgctGA--TAGTGTTCT-TGCTTGCACGGATATCATTTCCTCAAAGGTATTTATGCAGTTGTTGGTTTTGTGTGTGTTCTGCCCAGCATTGTGCCAGA--CTCTGCGGTCTTGAACAAATATTGTCTAATTTTTAAAAAATAGCATTTACTTTGAAGTTTGTACTTAGTTAAGAAACCATTTCCACAAATAGCAGCTCATTC-----------------tgcttctccgacttaatgacttaacatgcagaacca---cgtggggatcttgttataacgcagat--tgagtcagggggctgcgaagcggtcagacatcctgcgtttccaacacattccagccaagcgcc-----tgccgctgg-cccccgagctgccctttgggaagcaAG--CCTGGCAGCAC-------------AGCAGCAGCGC---CCAATGAA------CAGTGG--GGCT-------CCGAGCACCAGGTGTGCCTTC----------GCCTGC---AGGCACAT---TGCTCCCCTCCCGCT---------------CTCCTCCTCCAGGGGCCGGTCGGTGCTCCGGACCCTCAGGCCGCCAGGACAGGCCTGGGCCTCCCCAAGGACAGAGGACAGGATGTTGGCCAGGTTCACTAGAGACCAGGAGAG---GCCGCACAGCCCCCTGCATTCTGAGCATGCCCTGGAGGCTTGGGGCTTCCCCGGCTGCCCCTTGGGGCACCACCAGGGAcaggt-----------------------gcaggtgca-ggtgcaggtgcagCCAGGGTGGGGG------------------CTGGGCTAGGCGGCTAGGGGGCGGCACCTGAGCTGGGA----CCCACTTCA-CAGGGCCTGAAGGGCCTCGCCCCAG--------CTGCCTC-------ACTCTCGCCCTGCG-----GTGGCCTGGGACTCCG---------------------------------------------------CTGTTGCCGCTCCCTTCCCCG---CAGTC-TCCCCTTCTTTGAGGTCTGGGAAGCAGATTCCTGCC-CAC-CTGAGGGGCAAAAGGGGTATGTGCAAGGGGCGCTACAGCAGAGA-----GCTGCCCAG---------------CTGACC--------------------------------------------ACAGGAGAC--------------------------------------------------------------------------------CCCTGGAC-------------------------------------------TGCCCAGAACACAGGCAAGACCCAGAGCCAGCACGTATTTGAAAAACAGAACAAAACAGCACTGCCAGAAAAA----CTTCTACAGCTTCAAAAATAGTTATCCTGGGGAAGAAGAGGACTTGACTGGGCCCGCACTGATTCCGAATGGACCGCTG-----GTGTGCTGACATGCGCCTGGAGATGCTTCC-TCTTGATGGTGCCT---GCCTCTCCCTCCAGCCCTTTCTGACATGTGGGGCCTGTTTCCTT---------------------------CTTATAGAGAA--TCCTAATAAAGTGGGGAACCCGCTGGACTTCCGCGGGTCTTGTGTCTAGTGAACGCTG--------------------AAAGCTAGTGGGACCT--CTGTGAC------------CCCAGACGGTC-------------------------------------------------ACCCAGTCCTGTCC---CGTTTACTCAGGA-----------------------------ACCAGACTCTACTGTTCAAT-GAATGACATTGGTGTTCAGGTCTAACTATCCCCTCAGAGAGTTACTAATATTACCATTATTATT a score=7486 s hg19.chr6_ssto_hap7 1473046 235 + 4928567 ATGGGGCTATGTTTCATTTGCTACCCATTGAATTCATGTTTTAGACAGGGCA------------------TTTTTGGTTTCATATGAAACAGAAAAAAAAAAAAAGAACCGATAAACCATAAGCACACTGTATTTCCAAGTCTCTGGTACTTCTAATTTTAG----AGTGGTCCAGATAATTTAAAAGTGTGGATATGCACATTTGGAGGCTTTGTGCCTATATTAA--TAAATTGTTCTGCATAAGAAAGGAAAGAGA s canFam2.chr35 29383286 241 + 29542582 ATGGGGTT-TGTTTTGCTTCCTGTGCACTGACTTAGTGTTTTGGACAAGCCAGatttatttattttttatttttGGGTTGAGTATGAAATAGAAAAAACAAAT--GAACCTCT----------TATGCTGTATTTCCAAGCCTCTGGAATGACTAAATTTAGGGTGAGTGGCCCAGGTACTTTAGGGGTGTGGAAATGCAGATATGGAGGCT-----CCTGGACAAAGTTAAATTGCCATGTATAAAAAAGAAAATGGA a score=18775 s hg19.chr6_ssto_hap7 1473281 754 + 4928567 AATTTAGAAGCC---AAAAGAAATTTGGGAGTGGCTAAGACCTCAGGGTGAGGACTGAGAGCTGCCTGAAGGAAAAGCAGAGGAAAATTATTCATTTGGTGGTCCAGCTGGAGCCAC---AGGATGGCTGTGTTCCTGTGTTTGTGATGTAAAACTGTCCTCTATCTCCCCTACAGGATCCTCTGCACAACCTGCCTTGCCCCTAATGCTTT--------TTGTAGGTGTTCCTGAATTCCAA-GTGCTGAGTTCTGTCCACTACTGGGCAGGAGGCAA--AGAGATCCCACAAAATAATTGCTGGGCTGCTGGACTATGTGAGGAGCAGTCAC--ACTGATGTGCCTCGGAGAACCAGAGGGGTTATTGTAAGGACCAAGGTGGGACCTATAAGGGAATCTCTCTGGAGCCCAGGAACCGTGATGACAGTGAGCTGGTTGTAATGGGAACTAGAGCCTAGGCAGATGCATTGTCTCTCTGGTCGGCTTACTTTGCTCTGGATGTGGGGCCCATTCTCCTGTCTATAAGGAAGCTTCCTAGCTCTACTCATGGCCTTTATTTTCTTTTTCATTTTCAGttctttccttctttcagacttccagtgtagagtgttgactcagtcatacctctcagttcttggaacactatcatcatcagtccatgcaaggtcttctggttttatttgtattttctcctctctccccaatttttattcccattctcctcactcccaaaggcagctactccctaatgttt-------ttCTTTTTTAAAAAAt s canFam2.chr35 29383743 719 + 29542582 AATTTAAAAGCTTATGAAGAAGGTTTAGGCATAGCCAATGCCCAAATCTGAGGACTAGAAGCTGTCTG-----------GAGGGAAATAATCCACTTGATGGCACTGCAGGGGCAATGTGAAAATCTTTGTGTTGCAGTGTTTGTGATGTCAAACCAGTCTTTATCTCAAGCATGGGAGCCTCAGCTCCATGTACCTGGGGGTCAA-GCTTTCGTAAGCATAGCTGGTGTTGGGGAATGTGAGCATGCTGAGCTGTGTCTGCCTCAGGCCAG-AGGCAAGAAGAGATTCCACAAAACAGATGCAAGGCTGTTGGCTTACGTGAGGGGTTGTCATCTGCTAAAGGAGCCCCAAGA-TCAGAGGGGTCGCTGTGAGGACCCAGGTGGGGTCTGCAGGTGGAACAGTCCAAAGCCCAGAAC---TGATTACAGCAGGCCACCCATGAAGGG-ACTGTAGCC------ACCGCACTG--GCTCTGGTCTACACGCTTTGCTTTGCATGTGGG--CGGATCTCCCATCTATGGGCAGGCCTCCTGGTTTTATTGGTGCCCTTTATTTTCCCACTC-CTTCCAACTCCTGTCTTTTCCTGGACTTCCAGGGCATGG----------GTCAT--------------------CAGGCAGCAGCAGCCCAGGCAAGGTCTTCTTGTCTTATTCATACTTTCTCCTGTCTTTCCATCTCTCTTTCCCGTCCTCCTCACCTC--ATGGTCACTCCCCTCTAATGTTTCCAGATGCCCTTGGTTAAGACAT a score=2717 s hg19.chr6_ssto_hap7 1481713 172 + 4928567 TTATACAAAATGAAAAACTATGAATATAAAAAATAAAAAGGGAAAATTTACATGAGCCCACAACTTAGAGAACAGAGAGGAAATATGCTCTTTGCCACTAGCGTAATTTTACAGGTAGTTTCGTATAATCCTCCCTTTTCCATCTTTAAGATGGCAATTTAAAAAATCAGAA s canFam2.chr35 29404657 150 + 29542582 TTCTAATAATTGACAAGTTCTGCATATCTGTATTTAGAAAGAAAAGTAGA---AAGAACAAAAGCTAAAGA-CGAAGAAGAA------------TCATAAATGCGATCTTGGAGGGGCTTTC-TGTAATTCTTCCTTTTCTATTTTTAAAATGGCGATT-----AATCAGCG a score=79916 s hg19.chr6_ssto_hap7 1482201 2553 + 4928567 CAGAAAGGA-CAAGAAAAACAGTTGACTGTGTTAGGATGCAAGGCTGAATCTCTGCACATTCTA-TTTCCTCTGAGGCAGT----GCT-TATTTTCCAAGGAAGAATTTTTGGGTGTGCTATACTGGAGGTCTCC-CTTCTCAGGGAGAGTCATCACTTGCTCCA-AAACGCTGGACCTCAGCTCAAGGGCACCACTGCAGGAGGAATAAAAAGGTGGAGCCACGCAACAACTCGTCTGTGTTCCGCAGTAGGCTCTTTTTGAGGGACTTCCAGAAATGACAGCATGTGTGCAGAGAACAGAAAGCAAAGTTACACTGTTACAGAAGGCAGAGAAGGAAAACCTTCGGCTACTGCTATCAGTGGAATTTCTCTGTAGCCAGAC---TGAGGTCTGGTGGCATTTGAGATATAATATAGATATAGACCTACAAATACAGATCTCCAGGCTGttcattcaacaagtctttattgagcacctactctgtgcccagcactgcactaggtgccatg-agaatacaagagtagtataagatgttatccgccctccaggagcttacaaaactagaggcagaaataa---gatgtacgtgtgactcaggcagcatgtgacacacacaaagtgggcagctctgagacaatggtggtcaagtgaccactgaggcccagagccgttggaacagtctcttagaacagggtggaggacttaaaacttggatgaacagggg---ctggcagagcacttggaatgggtaaggacAAGACTGGGAGATCAATTTGGCTGGAGCAG-GGGAGCTTGTGTTAAACTGTGATGATGAGGGGCACCTGGACAGAGGTTGGGTCCGTGGGCAATGAGAAGACATGTTACTCCCTCTCTTGACATGAAGACCTGGTGGGCTTGTGGCCTCCTGCTGCCTTCCTTTCCCTGTCTTCCCATCTCCACTCTCTCCTAGGAAAGTGGAACCTGGATGCTG-GTAGGGCCAGAGACAGAGGCTTAACACCCTGCTGGGGAACCTGGTCAGAACTCCCGAGGCAGGAGAGGTTCTGCTCCACTGGATGTTTGTCTTGGTGTTTTTGGATGTGCTGATCAAGAGCAAGATGTTCTGGATTCTTAAAACT----CCCCTCACAAGGACCAATCTAGAGATAATTTATTGATCAGTGATCACAGCTTGTACCCCAAAGCCGTGTATGTCTGGATCCTTCCCTAAGACCACAGATAGCTCCAGGGAGTCCCACCTCCTTGGCTATGGAA----ATATGCTCAGCCCTGGTTTCAGAGAAGCCTGGACTCCACTCTGGACCCCATGAGATGATATGCGCTGGTACTCCAGGC------TTTAAATGGCCTGGGAAGCCTCAGTGGATTT------TGTTTATTTTCAGCATTGCCATGTATGCTTAACTCTGAGTTGGGGTGGGGTAGGTCTGTTTAAAATGCCAGGGAAGGTGGGCAGCAGAGTGGATTTGTGCAAGAAGGAACCTGGGGGGTTTAAGGACAGCAAAATGATCTT---AGGCGTAATTGACTGGTTTTTCTGAGGTCTTGCCACACTGGGCAAGAAAATGCTGCATCGGGCCCTTATTCCA----GAGAGTGCAGAGCTGGGGCCAAGGTCGTGGTCAAAAAGGAAAGGAGCCCTCATGGACTCCAGGGTCA-GAAGTTCCCTCGGGAAACCAGCAGGAGGTGGGAAAAGAGCCCCA-TTAGGGCAGTAGATGGAGCAACAGCACTGAGTGAGATTTCAGGGGGCCACAGCAATGGGGAGGTGGCTACCAGTGGATATGGGGTCCCCTGCTCCAGGTGCTTAGGCCAGGCATCCCGTCCCCCCATTGAGAGTCCTGGAATTCCAAAGAAGTGAAGCATC--TGAGGGTTGGGGCTGGGGGCAGATGTCAGGGCTCAGGGTCTTAGCAGGAGGCGTGTTCCTGGCCACTTGAGCCACAGGAAGGGGACCAGGCGCCGGGTGAAGGTGGCAGTGAAGGTGTAGATGAGTTCCTGTGACTCTGCGTTGGTGAAAGTCACGGTGCCCCCTTCATAATCCAGGGCGATGCCCACTCTCCGGGGCCGCAGTGCTGGGAAAAGCTCAGCCTCGGGGCTGGTGTTGGCCCAGATGCCGGAGGAGGAGAGGCGCAGCGCCCACACGCCATCCTCTGGCCGCAGGGAGAGGTCTCCCTTCCTCTTCACAGAGTCTCTAGCCACCCCCACCATGCAGCTTTCCAGAACTtcctcctcttcctcc---tcctcttcttcctcttcATCGCCCAACGATTCCTCATCTTCGTCCGTTTCCCAGTCGTCATATCCATCCCCATAGCCGG---cctcctcttcctcctcctcctcttctccctcttcctcctcatccccctcttcttcatcctcAGACCAGCCCTCCCTCTCCACTTCCACTTCCCAGTAGACCTTGCCCCAGGTGAAGCCCTTGCTGCCCAGCACCCCAGGCTCACAGTCAAACTGCTGGGGGTGCAGGTAGGCACTCTTGTACAGGCTGGTGTAGGTCACGCACTTCCAGTCCTCTGACAGCTGCAGGTACCCACTGGCCGACTGTGGGTCCAGGGTGACGCTCACTGTGGGGACA s canFam2.chr35 29404807 2271 + 29542582 CAGCTGGGATCTGGTTGGGTGGCTGACTGTATCAGAGGGCAGAACCATGGCTCTGTGCGGGGGGGTTTCCTTTGGGGTAGCCATGGCTCTGTCTTCGATGGCAGA--TTCTGGGTGTGCCA--CGGGATGCTGCTGCATCTCAG------CTGCCACGCACTGTGCAGATGCTGGG--TTAACTCGGGGCTGCC-CAGCGGGAGGAGGCACA---TGGGGCT---------CTGGCCTG-------------------------GGAGCTACACACAGGACAGCCTGTGTGCATGGGGAGGATGGTGGGCCCGGAGCCTTA--GGAGG-AGTGCAGGGGAGCCCCAGGCT-CTGCTGCCCACAGGACCTCGCTGTAGCCAGACGAGCAGGGTCCGGTGACACATGAGTTACAATAAAACCTGAGGCC------------------AGCTGCtcagtcaacaagtctttattgagcacctatgctgtgcccagcactgccttag-tgccgtggagggtacagg-gcagga-gacacagtgtctgccctcagggaccttacaAAACTAGAGGCAGAAGTGGAGGGGTCTATCTATGGCTTGGGCGGCATGGAGCATCTACAAAGTG-------------CAATG---------------------TCCAGACAC-------------------ACAGGGCAGGGGAC----------GGGGGACAGGGGTGCCTGGC-------CTGGAATGG-TGCGGATGAGGGTGGCAGGT-----------GACCAGTGAGAGCT--------------------GGGAGCCCCTGGGCA----------CAGTGGGC----------CATGCT-CGCGCTGTCCCGGCGGGAAGACCCAGTGAGCTGGGGGCATCCTGCAGGCTTCCATCCC--------------------TCTCCCGGGGATGCCGACCCTGTGCACGAAGTGCAGCCACCG-CACGAGCTTCCCACCCTA---GAGGACCTGACCAGGGCTTCCCAGGCAGG-GAGGTTCCCCTG-ACTGCACATTTGCTCCGGTGTGTTCAGGT-CACCCATCTAGGGCAGGACAGTCTGGATTCCCTTTACTGTCTCCCCTCCCAGGGCCCCACCCTCAGGT----CATTGATCAGCAGTCACAGGTT-TGCTCCGAAGCCACATGCACCCC-ATCCCCCCCCAAGAC--------GCTCCAGGGGCTCCTGCCCCCTTAGATGTGGAATGCTGAATGTTCAACCCTTGTCTGGGAGAAGCTCGTGC-CTACTCTGGACCTGGCAA-------TCCCATGGCACTCCGGGAGGCTTGTTCAAACAGTCTGG-AATCCTCAGTGGATCTCCACTGTGTTCACTTCCA-------CATGTGTG----GCTCTGAGTTAGG---------------------TGCCAGGGAGGGCAGGCAGCACAGAGGACATGGGTA----GGGGCCAGGGG----TGAGGACAGCAAGTGGGCCTTCTCAGGAGCAGCCAG------------------TGGCACAGGTGCCAACACAACGCCA-ACCCGCCTCTTCTTCCACGCAGAGAGTGCCAAGCTGGGCCAAAGGCCATGGGTGGTAGGGACA----TCCTCATGGGCTTTGGGGTCACGAAGGGTGCAGGGGAGCCC--CAGGAGCTGGGGGA-GAGCCCGACTTAGCTGTGCAGGTGGAGTA---GCACTGGGTAAGCCTT-ACGGGGCCGCAGCCACTGGGGG-----------CGGATA------CACCTGCTCTGGGGGCACAG-CCAGATGTCC--TCTCCCCGTCATGA-TCCTGGAGCCCCCCAGAGGGGAAGCGTCACTGCTGGGTGTGGGCCGGGGCAGGTG-CAGGGCTCAGGGTCGCAGTAGGAGGCGTGTCCCTGGCCACTTGAGCCACAGGAAAGGAACCAGACGCCGAGTGAAGGTTGCCGTGAAGGTGTAGATAAGTTCTTGTGACTCCGCATTGGTGAACGTCACAGTGCCCCCTTCGTAATCCAGGGCGATGCCCACCCGCCGGGGCCGTAGTGCGGGGAAGAGTTCAGCCTCGGGTTCCGTGTTGGCCCAGATGCCCGCGGAGGACAGGCGCAGCGCCCACACCCCATCTTCCGGCCGCAGGGAGACATCCCCCTTCCTCTTCACAGAGTCTCTGGCCACCCCCACCATGCAGCTCTCAAGAAcctcctcctcctcctcctcttcctcctcctcctcctcatcccccagcgattcctcatcctcgtctgtctcccagtcgtcatagccatccccgtacccggcttcctcctcctcctcctcctcctcctctccctcttcctcctcatcgccctcctcttcctcctccGACCAGCCCTCCCTGTCCACCTCCACCTCCCAGTACACCTTGCCCCAGGTGAAGCCCTTACTGCCCAGCACACCTGGCTCGCAGTCAAATTGCTGGGGGTACAGATAGGCACTCTGGTACAGGCTGCTGTAGGTCACACACTTCCAGTCCTCGGACAGCTGCAGATACCCGCTGGCTGACTGCGGGTCCAGGGTCACACTCACTGTGGAGACA a score=70508 s hg19.chr6_ssto_hap7 1484794 1025 + 4928567 TTTTTTAAGTCAGAGGGAATAAAATTTATTTTGGCAGATAGCGTTAAACAAAATTAAAGTTGCATACATTAGTAATATAACTCAACATCCTTAATTTGGTATAAGTGTGACACATTTTCTGGCTT--TGTATTCTGCTAAATCACCATAAC-TAAACTGCTTTATAAACATGATATACTGAAATTTAACTTGACTGTTTTCGCTTACGCTCTGATTCCAAACAAAACTTTTCATAAGCTTCCTCTATCTCTGGATCTCTGGGTCCAACTCATCATTAATATCATCCAAGTGTGGATCACCAGTCCCTGAAAAATCTGTTCCATTTTCTTCATAATCCAGAAAAAAAGTCCTCTTTTTCAAGTAACTCTTGATATGCTTCTTGGTAATCCGGATCAGCTGCAGTGAAAGGAACACTATGAAACACAATAACTATGTGAATGACCACTATAAAATGTTGGTTCATTCACATAGTAATTGGGATCTTTTTTGGCTGTTGTATTTCTGTATGATGAAGTTGCATGGACTCTACCCCAATTACTGCACTGGAGTTCTACAAGCTTCAAGAGCATCTGTTTCATGTCTCTGCCACAGCTTGCATCTATAACAACATTTTCAATTTCCTGAATAATTTCTTCCATATCAGTCCTTCCTTT-TCCTTCCAAGCATCTTCCAAAACTGACCCTGTCAACTTCAGCAATTTTATTGCACAAATTAAGCTGTCATCCATGGGATTAGAAAAGAGGGCATTCGGGCATTCGGCAACTCCTGAAGACCAACCTGAAGAATATCTGCCCTTGTAACCTGTCCATTTGTTCCTCTGATCTCCAGGTTATGATAAAGCTCTCCCAGAAAGGGTACAAATGCATGAAATTGTTTTGGAGTAACTTCATCCCCTTTTGCAGCTTGATCTTTAATGTCATATTCAGTCCGATATCTTTGAAGTAGAAATTGGCGGAAGGTGCTACTCTCTGTGCTAACTGTCAGATGATGT--CAGGTAATTACACAGGTGAGCTCCCATGTAAGAGAAA s canFam2.chr15 53800621 991 - 67211953 TTTTTTAAGTTATAGGGAATAAAGTTTATTTTGGCAGATAGTGTTAAACAAAATTAAAGTTGCATACATTAGTAACATAACTCAACATCCTTAATTTGGTATAAGTGCGACAT-TTTCCTGTTTTCCTGTGTTCTGCTAAATCACCATAACCTAAACTGCTTTATAAAACTGATACGCTGAAATTTAGCTATACTGTTTTCGCTTACGCTCTGATTCCAAACAAAACTTTTCATAAGCTTCTTCTATCTCTGG--------GTCCATCTCATCATCAATATCATCCAAGTATGGACCACCAGCCCCTGATAAATCTGTCCCATTTTCTTCATAATCTGGAAAAAA-GTCTTCTCTTTCAAGTAACTCTTGATATTTCTCTTGGTAATCTGGATCAGCCGCGGTGAAAGGAACACCATCAGAGG----------------------TATAAAATGTTGGTTCATTCATAAAATAGTTAGGATCATTTTCCGGTGTTGCTTCTCTGTATGTTGAAGTTGCATGGACTCTACCCCAGTTACTTGACGGGAGTTCTACAAGCTTCAAGAGCATCTGTTTCACATCTCTGCTGCAATTTGCATCTACGACAACATTTTCAATTCTCTGAATAATTTCTTCCATATCATTCTTTCCTTTCTCCTTCCAGGCATCTTCCAAAACTGACCCTGTCAACTTCAGTAATTTTACCACACAAATTAAGTTGTCATCCATAGGATTAGAAAAGAGGGCATTCAG--------CAACTCCTGAAGACCAACCTGAAGAATATCTGCTCTTGTAACCTGTCCATTTGTTCCCTTGATCTCCAGGTTAAGGTAATGTTCTCCCAGGAAGAGGACAAACGCGTGGAATAGTTTCCGAGTCACTTCGTCCCCTTTTGCAGCTTGATCTTTAACTTCATATTCAGTTAGACATCTTTGAAGCAGCAACTGGTGAAAGTTGCCACTCTGTGGGCTAATTGTCAGATGATGGGACAGGTAATTACAGAGGCGAGCTCCCATGTAAGAGAAA a score=7215 s hg19.chr6_ssto_hap7 1486426 95 + 4928567 TTTGGGACAGATGTGGCCT--------CTGAGTTCCACAAGTTCTTGCAAAGCATCATCTGTTGTAACACAAGCATTCAGGGTCTCTGTAAACTGTTCAATTT s canFam2.chr15 53801612 103 - 67211953 TTTGGGATAGATGTGGCCTGTTGATAGATGAGTTCTACAAGTTCTTGCAAAGCATCATCTGTTGTAACCCAGCCATTCAGGGTCTCTGCAAACTGTTCAATTT a score=7062 s hg19.chr6_ssto_hap7 1486521 106 + 4928567 CAGTTTCAAAACTACCAGCCTGCTCTGTAAGATGGTTCAAGAAACCCTGAACAGGTACTGACAGAGTGGGATAATCCTCACCATCATCCTCATAGGATTCTCTATA s canFam2.chr4 21812114 105 - 91483860 CGGTTTCAAAACTGCCAGGCTGCTCTGTAAGATGATTCAAAAAATCCTGAACATACTCTGGTAGAGTGGGATAATCCTCACAACCATCTTCATAGGAATC-CTATA a score=9638 s hg19.chr6_ssto_hap7 1486627 182 + 4928567 ATTAGAA---TAACCTGATAGGTAAAATTTGACGGTATTCACAGACAGCTCAGACATTAATAAAGAAGCTACAACCACCTAAGGTTTAACCACTGCTAACTC--AGTTCTGCTATGGGATTTTATCCTGTGAACTAGATGAAGCTCTC-AGGGCCTCGTTTGCTCCCAGA------CAGGCC--GACCTCCTCAAT s canFam2.chr28 6562103 196 + 44191819 ATTAGAAGAGTAACCTGATGGCTAAAATTCAGGAGCGTTCTCAGACAGCTTAGACATCAATACAGGAGCTACAACCACCTGGGGTTTGGCCATTGCCGACTCCAAGTTCTGCGGCGGGATATTATCCTGTGAACTAGGTGGAGCTCTCTGGGGCCTCGTTTGTTCTGGGAGCGCCCCGGGCCGGGATCTCttccat a score=7591 s hg19.chr6_ssto_hap7 1487109 423 + 4928567 AAGAAAAGCAAACACAGGGCAGAGAAGGATCAGACTAGCAAGCAGAGGCCTCTA------CTGCAGACTAAAGAGTAGGCTGATTAGAAAGTGCAAAGAGGGAGGGGGGCTTCTATTGTGCAGCTGGGAAATTCTTCCTGTTGCA-----AAAGGGGCTACCTGGG-------------------GGAAAA--------------------------------------GTGAGCAGTCA---GAATCTCTGCAGGCGGAGTTTTCTATATTTGATGTACATCTGGGAAACACCCTCTAGACACTCACCTGTCTTATATTCCAAGTCTCTCAGCAGCTTCCCTGGGGAGAAA-AAAGGACAGCAATGACTC--AAGTCCCGAAAATTTATGAGCCCATTTCTTGCTCGGGCAGTATCAATTTCCTGATAGGGATCCATGTCTAAGACAAGAGGCCCTCAGAAGAGTGAG-GATCGACAAGGTGATGGAAAGGAGCTGG s canFam2.chr35 29407134 461 + 29542582 AGGCAGAGGGGACACGGTGCAGAGGGGCATCAGAGCATGAAGCAGAGGCATCTGGGCAACCTGCAGACCCA-----------------------------GTGGAGGGGCCCCAGGTCTGCAGCTGAGAAATCT---CTGCTGCATAAGGGAAGGGTCTCCCTGGGAGCTGTGGGGGGCCATGGGGGACAGTGGCTGGGTCATGGGGGCCTGTGGGGGGCCATAGGGCTGTGGGAAGTCATAGGGGGCTAGGGGGAGGGCGTTCTTCATCACAGGTGGATA---GGGAACAGCCCTCTGCACACTCACCCGTCTTGTATTCCAAGTCTCTCAGCAGCTTCCCTGCGGAGAAGGAAAGGACAGCAATGACCCTTGAACTTGGTAAACCTACAGGCTTATGTCCTGCGTGGTCAGGGGTCATTTCTTGCAAGGCAACCCCCACCCCCGCTGAGGTCCCAGGGAGAAAGGAGAGAACTGCCAGAAGATG--AAGGTGCTGA a score=11258 s hg19.chr6_ssto_hap7 1487592 349 + 4928567 CTTACCCTGGAATTCCCTCAGGCCTCGTTGCAGAGAGAGGAGTTTATCTGAGAATTCTCCGGTCTTTTTTTTAACCACTCGAGCAATGGGTTTCCCAACCCAGAACTTCTTCCGTGGATACCTAAGAAGATGACATACATAACAAGCTGTTACTCAGCTCTTCTTACTTTCCTTcatacttatctctcaatcctcatggcaattatgaaggggagaggaaaggtatgattatccccaaacaagtgacagaaaaacagtggcccaaagacaccagctgaaccagggct---tcagaacatcagtag--actccacatccagggcgctctgtctactaagccaTGTTTCTAACCTC s canFam2.chr35 29407635 318 + 29542582 CTCACCTTGGAACTCCCTTAGGCCTCGCTGCAGGGACAGAAGCTTATCAGAGAACTCGCTGGTCTTCTTTTTAAGCACCCGAGCAATGGGTTTCCCAATCCAGAACTTCTTCCGAGGATACCTGGGAAGATGACACATGGAAC---CCATTACTTAG------------GCCTGTGAGTGTTTCTCTGGGTTCTCACGACAACTATGAAGGTGAACGCA----TCTGATGA-----GAAC-----ACAGAACAAGGCTG------AGACAGTTGACCAGCCAGGACTGGCCAGGGATTTGAGCAGCCACCCCCCA-CCATGGCACTGGGTGTGTTGGGCCATGTGTCCACCCCC a score=5945 s hg19.chr6_ssto_hap7 1488013 234 + 4928567 AGAGCAAGTCTCCAGTTCTCAATGATGTG-TCCTGCTCCTCAGAAAGGCATCAG-----GATGAACCATGGGATGTGAGTACCTCTGGCACCATACCACTCCCCATGAATTCAAATGCACCTGGTCAGAAGCGGGGGAACATAAACAAGGGGGATGAGGTACGCCATGGAGAGGAGACTCT-TTTACCTGTTTAGGAAGTCTCTCGTGTCCTAGAAGGGAAAGAAAAAAGCACAAGTATCA s canFam2.chr35 29407979 221 + 29542582 AGAGCAGGGCTCCAGTTCCCAAGGCTGTGCTGTTGCTTCACAGGAGCGAGGCTGGCTGCGGTGAACCAAAGGATGCGGACACATGTGGTACC--ACTGCTCTGCGTGGGT---------CAGGGTAGGAAGCCAGGG-ACACAGGC-AGGGGACCGAGGTG---CATGCAGAAGGGAAGCCAGTTACCTGTTCAGGAAGTCCCTGGTGTCCTACAGGG----GAAGAAAGGACATGCATCA a score=5168 s hg19.chr6_ssto_hap7 1489950 759 + 4928567 CTGGCCAAG----TCCTCTAACATGCCCCTCAAAACATGTAAGTCCA-AGGCGGCTTCAGAGGACAGG-CAACAAAACAGA-CAGTGTGTCCTGACAGCTCTGCTGACAAAGGTGGCATAAAAGAGCAAATGAATGGAGCAGTAGCTGGAGTGTGGGCCAGAGGCCCATTTGGGCATATTTCCTGACATGGAAGTTCCTAGAACAGTAGAAAGGGAGAGAATCATACAGGAGAAAGAAGAGTCCTCTAAAGGTTAAAGGTTGTGAGCAGCCCAGAGAGGGTGGGTCCCGAGAGCCAGGGCAGGGCTGGCCCTGCGGAGAAGAGGCTG----AAAGACTCAGGAGCCCCCATCCACAGCCACATACAGGGCCTCTGGAGGGAAGTGATCCGCCCAAGTCTCCTGGAGGACTCTTCT---CACCCAAGACATCTGAAGCTGTCATGAAACAGGCAGAGCCGAGCAGTGGGGCTGCGGCAATGAGTCATGGCAAGCTCCCGGAGGGGATGTGCCCGGTTACTAACAGAGAG-CATCAAGAAAGTTCTTCACGGGGGTG---------TACAGCAGGAGAAGCAGGGTACAAGCATGCCACCTGATCCTGCAGGGCCTGCCCGGGTTACCAGGGCAGGATGCAGTGTCTCTCTGGGCCTCTCCTGTCACCCCAATCCCTTTAATGTCTTCTTGATGCTCCCAGCCCATAGGTTTGTCTTTCCTTTCCTATCACCTCTATCAAAAGGTCTCTTCTATTTTACACATTTTGTCCTGCTGCTTCTCCCTC s canFam2.chr35 29409466 583 + 29542582 CTGGCCCAGCACATCCTTCCCTCTGTCCCTGAAAGC-TGTAAACCCACAGGCAGCTTCACAGGGTGGGGCAAGAACTCAGAGCCGTGTCTCCGGG--GGCATGCTGGCAA-------------------------------GCACCTGGGCCGTGGGGCA-AGGGCCAGGAGAGTGTGT--------------GTTGTTGGGACTGTGGAA----------CTGTACTGG-----------CCTTGTGAGGGTTTATGGCTGGGAGGCGCCCAGAGAGGGAGG-----GAGACCCATG-------TGGGACCGGGGGGAGGGGTCCAGTGTGGGAACCCAGAA----TAACCTGCAGTCACATGTATGACCCCAGCA-GGAAGCAGCCTGCCCACAGCTCCT-GAGGACCCCCCTGCACTCCCAGTAC-TATAGGGCTGTCCTCAAACAGCCA-CTCGGAGCAGAGTGGCTATGGCA----------------------AGGGAGCATGCCTGGGTGTGAAAGGAGTGCCCTTGCGCAGGTCCTCCATGGCTGAGCTTGGCCCCCACGGTGGGGGACAC-GGGCACAAG-GTGCCAATCCAGCCAGCCAGGCCTATCCGGG-----GGTGGATGGTGCAG---------------------------------------------CCTGA-GCTCCCAGTCCA---GCTT-CCTCTCCCCTCCGACCACCTC-------------------------------TGTCCTGCTGCCCCTCCCTC a score=1869 s hg19.chr6_ssto_hap7 1490858 137 + 4928567 CACCTGTATTTCTCTATCAGACTTCTGGACCCTAT---TTTAGGTCTT-----------TTTCTTACTATACTTTGACAGCCAAATAATCTCTGGGAAAATATTAATGCTAATTAGGGAGGTAGCTGTCCAGTTCCCACGCAGTACAATCA s canFam2.chr35 29410049 150 + 29542582 CATCTGCCTCCCTGTGCCGTGCTGCAGGTCACTGTAGGTCGGGGTCTCTGTGACCAGGGTGTCCTCCTGCCTGAGGACAGTCACAAGACCTGTGGGAACACATCAGTGACAACGA-AGAGTTCACTGTGTAGTCCCCTTGCAGCAAACCCA a score=24664 s hg19.chr6_ssto_hap7 1493461 2289 + 4928567 GGCAAAAGGAG-------ATGCAGAAAATGACCCAGTCAAAGAGTATGACGAGAGAAATCTGAGAGAACAGAATGACATCTGGAGGAAAAGAGGGGGCCAGAGAGACATTctggacaaa-----ataagaacaagagctcagagcccaggagtcaggacatctgggctcaagctgtgacctgacacccaccccatggcctgggacaaactcctcccactctctggacctcagtgacttcatcagtaggggctgaactggaaggtctaaaatccctgccagtcctcattctgtACATCTGAATTCACAACAATGAGGAGCAGGTGGCCGCCTCCTTCTGCAGTCTGTCCCAGTGCACATA-CTGCAGAGTCTGCCTTGCTATCTCTCCCTCCTAGCTATTGCCCTGCCATTAGCCTGGGACTCCACCTTCCTAG---AGATCCTGGGTGGCTCTGCTGCTGACAGACAGACCCAGCCACCCTAAACAGTGCAAGTGGGGGAATACCATCAGAGAGCCCCTCCCCTCCCAGCCTATGAGAGCAGGAAGGTTGAGCCCTCTACCCCTCCAAAGGGGACTGGGCCCTCTTCAGGGTAAGTGTGATCCCCAGAGGCTCCCGGGGGGGAGGAGATGTGGTGCCATTTCAGCTTCACAGCCAGTTCTTCAGCCCCAAACCCTCCCTTTCTCACTATCAAAGCCCCCTCCTCTAGGAGGTGCCCCGAGGCCCCCTTGTCTGCTTTCCATCTTGTTCTCTGTGTGGTAATCCCATGGGCCAAAGAAAACCTGGCC--ATCTCTGTCTCCCTTCCCCAGTTACCCTATCTCTTCCAGATCCTCTGGGTCTTTGAGAGGAGCTGCTGGTCAGCCCTCCCTCAGCCACCCCCAACCACAACACCATAAAAAGCTTCCACCAGCTGCTAAGTGTCTGCCAATGACTTGTTAAGAGGGCTTGTGATGGCAGTGATGAGGATGGAGGATGGTAAATGATATTAATAATCTTCCCTTCCATTTT--------CTACTATACCATTTAGTTTTTTGAACAGTTTTGTGTAAAAAGTTTATTTTTTGAAGTGACAGCATGCCAGttatttcattttatgctcatgcaatctacagactaattggcagcagtaaggattatcatctccatgtttcagatgacaaaactgagcccccaag---------tcttctaaggtcctgcaagtgaatggc---agggctgggacccaccgtcctggtccctggcgccctgcccagGGACGGCCTCTCACCTGCATGAGCTCTGCAGCTGGCTGCTGCGCCTTGCCCTCCAGTTCGGAGATGACCAGGGCCAGCCGGGCAAGCTCCCCGACGCCCCGGCTCTTGAACTTCTCCCTGCCCTCCGTGAGCTCCTGCTCCAGCTTCGCCAGCTGTTCCAGCAGGTGTTCCTCCCGCTCCCTCAGGAACTGATGACCCTGCTCAAACTCAGCCACAATGTACTGCCTCTGGTCCTGGAGCTTCTTCTGCAGGGGGCAGGAAGGGGAGAAGGGCTGACACCTCTGCTCAGGG---------TGGAGGGCCCAGTGCTGGAGGTGTGCAAGGCTGGCTCGTTCACCTCGCTACCCCCGTTCAGGAATTCTACAGGATCTGGAGTGGGAGGAGCTACAGAGGGTTCCTGGTCCACACTCCGCTTCTCAAAGAAGACTCCAGTAATGAATTAGTTCAGTTCACCCCACCACTATATGGTCAAAACCCTGTCTCCACCTGACTGGTCAGCCACAATCTGTTCTAGCTAAACCAGTACGCTCTGGGGCCCCTAGAGAAACTCTGTGGGTCTCACTCATGAGCCGACGCACTTTTCCCTCCTGGACAAAATCtgtcacctcttccaggaagttttgcttgaTTAATGTCATCTAAGCCTGACCAGCCCTCTCTTCAGCACCCCACTGTTCAGTCTAAAATATCTATATGTACCCCACCCCTGCCATGTAAGACTGCATCCTGTTTCCTCAGCAAAATTGTGTGACGTCTGTGCTTAGGGACTATGTCCTTTCCTGCCTCCAAATCTCCTCCCCAGCTGGGGTTGGG--GGAGTCCTCAGTGGCCCTGT--TGACTGGTGCTGAGCTGGGGGCAGCCATGCACACTGAGGGCCTGGAGG-GGTCCTTGGA-CTTGGCTGTCTCTAGCTTACTGTTTCCCTCTCCCTAGGCCTAATGACTCACCACTGGCCCTGACCCCACTACTCCTCCACTGCCCACTTCCTCAACATACACAGTTCCCCAGAAAATCAGAACCATTTGATCAGTTCCCCCCAACCCCAACTCTAATCAAGTACATAATGTGCTGCCT s canFam2.chr35 29410466 1664 + 29542582 GGCAAAAGGAGGGCGCGGAGGCAGTAAGTGAATGAGTCACAG--TCTGATGCAAGGAA-CTGAGGGCACACAGTGGCATCTGGAGCAAACAGGGGAGCTAGAGGTACATTTTGGGGAAACAAGGATAAGAACAGGAGCCTATAG--------------------------------------------GCCTCACGGCCGGGCG-----------------------------------ATCAGCAATGTCTGAG------GGCCCTCGAACCCTGCCCATCCCAACCC-------CTGAG----CCAGAGTGCAGAGCAGG-GGTCACAGGCCAAGGTGATCCCTTCC------CATAGCTGGACAGCCTGCCCT-----CTGTGCATCCCTGAGGCTGCC--------AGCCTGGGACAGGGGTTTCCTGGTGGGGGCCCTGGG-GGCTGTACTGCTG--------------------------------------------------------------------GCCTGGGAGGG-AGGAAGGTCCAGCAC----------------------AGCCCTC--------------------CAGAAGCTGC-AGGACGGAGGAGACGAGTTGCCTTCT---------------------AGTTCAAGGCTCATCCCGTCTGAGCATCAAAGCTGTCTCCGCCAGGAAGGG----------------------TTCCATCTTTCTCTCTGAG-AGTAACTGCACAGCCCTGAGAACACCCGCCCCCATGGCTGTGGCTGTCCCTCAGCAATCCCCCACCCCACAGCAC------------------AGCTGC-----------------------CCCATCTCCAGAGTCAGGAGGAGCAGCTTCCCGGGGACA-GTGTCTGC-AGTGAC------------CACATGA--GTAGTGATGAGAGC-----------------ATCCACA-CCTTCCCTTCCACTTTGATGGCACTTTCTAAACCCCCCAACTTTTC-------TCTG-GTGGACCATTTGCTTTGTGAAATGACACTGTGAC--------CATCATGGGCTCAGTCAGCC-ACAGAAGGACACAGGGCAGG--------------CCAGGGGTCAGGAGA-GAGACTGAGACCTGTGGGGCACTCTTTCCCCTGAGGTCCTGCACGCAGACAGCTCTGGGACAGACTCCTCCTGTGCTGGCTGCCCACTGCTGGTCCCAGGAAGGCCACTCACCTGCAGGAGCTCTGCAGCTGGCTGCTGTGCCTTGCCCTCCAGCTCAGAGATGACCAGCGCCAGCCGGGCCAGCTCCCCGACGCCCCGGCTCTTGAACTTTTCCCGCCCTTCTGTGAGCTCCTGTTCCAGCTTGGCCAGCTGCTCCAGCAGATGCCGCTCCCGCTCCTGCAGGAACTGGTGGCCTTGCTCGAACTCAGCCACCACGTACTGCCGCTGGTCCTGGAGCTTCTTCTGCAGGGGG-GTGAGGGGGAGG-----TGATGCTCCTTCCCTGGGCCATGGCCCTGCAGGGTCTGCTGTTGGAGGGGCACAAGGCTGGCCC---CACC---CCACCCCTCTTCAGGGGCT------------------AAGGGGTGGTATAGCATGCCTGGGCCA-ACCTGGCCTCACA-----------------------------------------------GGGCGGGATCCTG-----ACCTGAC------------ACGCATCCTACATAAGCCTGGGTGCTGCAGGGTCCCCTGACAAA-----------------------GGACACACGT--------------------------------------------------------------GCCTGACC--CCTGCCCTTGGGGAAACTACCG--------AGAGT-----------CCCCTCCCC------------------------------------------------------------------CCTCTGCGGCTTCTAAACTTCCCT-----GTGGGTATGGGCCAGAGTCC---ATGACCCTGTGCTGACTCACGTTGGGCTGGAGGTATCCACACAGCATGAGGGCTCACAGGCAGTCCTCGAACCCTTGTCGTCTCCTACATGCC-TTTCCCCCTTTCCCAGTCTAATCACTGA----TGGGCCTGACCCCCACATCCCTCTG----ACAGTTCCCTGATGCAGACACTCCCCTGGAAAACTGGACACA-----------CCTTCCTGACCCACCCCTACTCCAGCACATAGCGTGCAGCCT a score=5037 s hg19.chr6_ssto_hap7 1496110 408 + 4928567 GATCCTGGGCCTGGACCTCACTACATACAGTGCCATCAGAAT-TGGCAGACCTGCCTTAGCTGTTTTCTAGCCCTTCCCTCTCAGTTCTTACCCTGGAGCCAGCTCCCTCCTTCTAA-ACCCT----CTCCACTC-----TCAGGCAACCTTGTCTCTCTCTCTCTCTTTGAAAGGAAGAATGAAGCCACACCTTCTTCAGTCCCCTGGCAGAAGAGAACCAGCAGCTGGACATGGGCCCTGCCTTCAAGGTGACAGTCACAGAAAACggaagggactctagctgacatccaggcagcccacttgtctctcagacaagaaa-------caggcccaagactacacggctcagaaagacagcacttgggct------aaaacc--------------------caggtctgctactgc--------------------------cagg----ctgACACCCATCCTCC-----------------------CTGTGAGCAGCGCCT s canFam2.chr35 29412148 454 + 29542582 GGCCCTGGGTGCGGGGCTCAGCAGATACTGCATACCCAGAATGCTGCATGCCCTCATAGGC---------------CTCCCTCGGTTCTCATCCCGGGGCCAGCATCCTCCTTCCACCACCCTGGGGCTCCCCTCCCCAATCAGG-AATCCGGTCTCCCTCTGTCTCT--GACAGGAAGGACTGAGCCAGGACCACCTCAGTTCCCCA-TAGAACAG---CAGCCACTGG----------TGAGTTAGAGACGA---------------GAAGGGACCTTAGCTGACATCTAGGCCACTCACTCACACATCAGATACAGAAGCCAGCCCAGGCTCAGGGCT----GGCTCAGGGCGTCAGGGCTCAGCCTTCTGGCAGGGTCTCCACTGCTCAGCTTTCTGGCAGGGCCTCCACTGCTCAGCCTCTAGTGTTCAGCCTCCCAGCAGGGCCTCTAATACTCAGCCTCCTGGCAGGGCCTCTACTGCTCAGTCTCCCAGCAGGGCCT a score=7124 s hg19.chr6_ssto_hap7 1496524 195 + 4928567 ACCTCCCAGCTG-------------CCGCCTACT--------------TGCCCAGGCTC------ACCCTGCC------------CTACACGGGCGCACCGCCTCAGGGCTTCCTGAAACAGCCTCACTTACCAGCGCGGCCAGGATATCAGCTTCTCCCTTTGCCTGGAAGCCCTGAATTTTGTCTCTGTCCCTCCTTAGGGTACTCAGGTGGTTCAGGATTTTTTCCTGTGGAAAAAC s canFam2.chr35 29412667 240 + 29542582 GCCTCTCAGCAGGGCCTTTATCGCTCAGCCTCCTGGCAGTGCCTCTACCGCTCAGCCTCCAGACCACTCAGCCTCCTAGCTCCTGCTCCATATGCCAACTGCCTCAGGCTTCTTCTCAACAGCCTCACTTACCAGGGCAGACACGATATCCGAATCTCCCTTGGCCGGACATCACTGAATTTCGCCTCTGTCTCTCCCCAGGATGCTCAGGAGGCTCAGGACTTCTTCCTGTAAAAAGAC a score=36457 s hg19.chr6_ssto_hap7 1496805 816 + 4928567 CAGAGAAGGTGGCAAGGCACCCTCGGGGGTGAAGA--GGGCTTACCCTGTGGGGCTGGGCGGCCTTCTCCATGAGGACGGCCGTGTGGGGCCTGTGCTCCCGGGACTCCCGGCACATCACGCACAGCAGCTTCCCGTCGTCCTCACAGTAGTAGTGCAGCTTCTCTCGGTGTCGCTCGCACAACTTTGCATCCTGCTGCTCCCGGGTCACCTCTCCCGGCTGCCTGCCCTTGTCCACCTTCAGCCGCTCAATGTTCTCCACCAGGCTGGCCAGTTGCCACACGGGTCGGATGTTCTCCTTCTTAAAAGGCTTCTTGCAGAGTGGGCAGACGGGGCGGCTCCCTGAGATGGGGCGGACGTCTGTGGTGCAGCTGCGGCAGAAGACGTGGCCACAGTCAATGGTCACAGGGTCCCGCAGGTAATCAAGACAGATGGAGCAGGTCACCTCCTCTTCCAGGCTCCGTAGTGGGGCTGACGTGGCCATGGTATCCTTAGTTCAGAGAGGTCTCCGTTCACTGGTGAGGACTTCTTCTCCTTGGAGACGCGACATAGAGTCAGGAGCAAGCACAGTAAAGGGGCAAAGGTGGCAGCCTGCACAGGGCTGCCAGCTCCAGCACTCAGTCAATCGACAGACACCA-CCAGCTCCTACAAGG-TtcacacaatgtcaacgagaagaggaccttatagatctagtccaacttcctcattgtacagataaggatatggaaacccagaaagatTAGCTTGGTAGAGTGAAGAGcaggacagccactagcctataccttgctgttgggagagcct---caacaccctttccttcta s canFam2.chr35 29413639 758 + 29542582 CAGAGCAGGTGGGGGGACAGAGCAGGCCGTGGAGGTGGGGTTTACCCGGTGGGGCTGGGCGGCCTTGTCCACGAGGACGGCCATGTGGGGCCGGTGCTCCCGAGACTCCCGGCACATGACGCACAGGAGCTTCCCATCATCCTCGCAGTAGTAGTGCAGCTTCTCGTGGTGGCGCTCGCATAGCCTGGCGTCCGGTGGCTCTCGGGCCACGTCTCCTGGTTGCCGGGTCTTGTCTACCTTGAGGCGCTCAATGTTCTCCACTAGGCTGGCCAGCTGCCACACTGGCCGGATGTTCTCCTTCTTGAACGGCTTCTTGCAGAGTGGGCAGACGGGGCGGCCCCCCGACACGGGCCGGACATCTGTGGTGCAGCCACGGCAGAATACGTGGCCACAGTCGATGGTCACTGGGTCCCGCAGGTAATCCAGGCAGATGGAGCATGTCACCTCCTCCTCTAGGCTGCGCAGCGGGGCTGATGTGGCCATGGCGCCC--------------------TCCACCCGTGGGTGCTGCTCCTGCTTGGAGACCAGACACGGAGTCAAGAATGGG---------ATGGCGGGGGTGGCAG--------------------------GTCATTTGAGCCACAGACACAACCCAGTACCTACGAGGCTTGGCCCAAGGCGGACAGG--GAGGACGGGAGCTGGCTAGCC--ACACCTGCACTGTTCAG--AGGCACAGGG---CTCAGAGAGGGTGCTCTGGCTGCCTGAGGAGCACAGCA-CCACCCCCATGGGGGTTGCTGGGGAAGCAGCCTTGCCCAGACCCTGTCCTCCCA a score=1815 s hg19.chr6_ssto_hap7 1497746 56 + 4928567 actgtgcaaagcacaagacacacgagcagtcatgggggtcctgACAGAGTCAAGAG s canFam2.chr35 29414532 56 + 29542582 ACTGAGCACAGCACAGACCACACCACCAGTCATGGTGGGGGCACTATGGGCAACAG a score=1289 s hg19.chr6_ssto_hap7 1498136 32 + 4928567 GCTCCTCAAGGTTTCAGGTTTCAAGAACTAAG s canFam2.chr35 29414588 32 + 29542582 GCTTCTCTGGGTCTTGGGGCTTCAGGACCAAG a score=2611 s hg19.chr6_ssto_hap7 1498510 130 + 4928567 AGCACTGAGGTTCTTTACCAAAACTCGAGAAGCATCAGGAAGCTTCAGGAGTCTGACTGTCAGCATTTCCCTTTGTGAGTATTTCCCTGGGCTGTTCTATAGTTTGGGTT-TAATTTGCTTCCCCTAGAAG s canFam2.chr35 29414620 120 + 29542582 GTCACTGACATCCTTAACCAAGAC-----------CAGGGCACATGGAGAGCCTTAGCTCTGGCATCGCCCCTGAGAGGCGTTTCCTTGGGCTGAGCTGTGGTTTTGGTTGCAGTCCTGTTCCACCAGCAG a score=6014 s hg19.chr6_ssto_hap7 1498756 945 + 4928567 TGCTGTGAGGCCTTGGCTTGTACAGGGAGCGGGGAC------------------ACACAGAAAGGACTCTGCTTCTGTTTACCTTTGTAGTCCTGACCCAGTTCCAGGCTGAGGTTATGAGCCTCAGCACATCTAACCCAAGAGCAGCCTCctgcccctgactctgtgtgacaatacagaagtcacttaagtactgagcctcagtgtatccatctgtaaaatgggaagagtgatacttacctttaagggtttctaagcaggtcatgtgaaaga-------attatgggaaaagtgctaagcacaagcctggtacacagACGGAAATCTAGGAGAGAACCCACAACCCCTGGTTTCCAAATCCAGTGAGTGTCCAAACCACAA-ACAAAGAGTTAAATTCA-AAAGTGGCAGCAAAAGAGGAAGTGAGCAGAACCAGCCACAGTGACACACGTGCTACAGAGTTCAACAACATCGTCACAGGGC--AGTACCTGGAGGACTTGCTCTCCTATAGATCCATGGAAGGCAACTACAGCAGCGCTGGGAAGACAACCAG---CAGGGCACAGAGGTGACTGCGAGGCTGGAATGAAGCAACCTGAATTACAGGCAAATCAATACTATTAATGATTATGTATGGTGAAAGTCCATCACAACAGAGTTCAGTGGCCTCTGTCAGTAGTGACATTAATGGGACAGAAATAAAACCCCCAGTCTATAAGACCCAAGAGTAAACAAAACAGGGA------TATAACGTCCACTCATTGAGGGTCTAGTACAATAATACATAAAAAGTGTTTTATAACGTAAAAGGACTACATAAATATAAGAGATTCTTATAGTGCTGATAATAAATTCCAACTGGAAGCACTAATGGATCTAGGTATGTGTGACTTTAAGAGACATAATGAGGGGAAAATCAAGCACCTTCAAAGCTCAAATGAAGGATTCAAGGAATTTAACTGTCAAGTGAAAGTAATA s canFam2.chr35 29414812 766 + 29542582 CGCTGCGAGGTCCAGTGCCTCAGAGGGAGGGAGGGAAGGAGCACGCATGAGAGGACACAGGATGGACTCTG-GACCATGTCCCTTGGCAG--CAGATCCACCTCCTGCCTGGGGTCAGGAGCCTCCATGCAGCAAATGCCACAGCTG-TGCCTGCC---GAATCTGCAGGACAGCAGAaacctcgttta--------------------tcatccataaaatggggacagcgatactta-cttcatgggttgct---------atgtgactgagtctgagattacgg--caagcgcagtgcatagGGGTGG---------GGAACTCTAGGACAGG--TTGGGACCCTCAGTTTCCAAGTCCCATGAGAGCTCAAACTGGAACACAGCAAGGTGGGAACATACAGTGGCAGCAAGAGAGGGAGTGAGGACAGGTGGCCAC---------CATGCCTCGGGCTCCAGCAAAGCCCTTA-ATGGCTGGGTACTGGGTTGAC----------------------------------------CTGGGAGGGCAGCCCGTGACGGGGTGCATGGGCCAC-ATGCGGCTGGAATGCAGCCCCCAGAGCCACGG----CTCAGCTATACTCCTGACCATACACGGGGTAAGCC-------ATGGAGTCCCTT---CCCTGC---------------TGGGATGCAAGCAAG-----CAGAC-ATGAAGCCCACAGAGAAGCAACACAGGAAATTGAGTGTAACCTCCA---------GATCAAGTGCAGGAGCAGA-GATAACTGTTCAACAAGCTGCAA-CACCAGGCAGAAGCGAGGGGTCACTCCACGGCTGG-----------------------------------------------TTGACAGGCACAA-----------------------ACAGCCCCTATGAGGGAGTGATGGGATTTAGCTGAGATGTGAAGGTACCA a score=1407 s hg19.chr6_ssto_hap7 1500050 22 + 4928567 ATGCTAGGAATTGCCTGGTCCA s canFam2.chr35 29415609 22 + 29542582 ATCCTAGGAGCTGCCTGCTCCA a score=2460 s hg19.chr6_ssto_hap7 1500141 337 + 4928567 GTTTGGAAAGAGGAAAAAGGAGTGGTACTGGGCGTGTCTGTGGGCTTTCAAGCCCTT--------TATCATGCCT--CTTTGCCAAATGGCCTAGAAGTTTAAAAGCTGAG-------GTTTTTCTTTGTTGA-AGGATAGCCTGTGTTATCTTTGGGTTGGGAACTTATTTTGCAATTTACTTGCAAAATAAGAACAATAAAAGGACTATGAAGAGCTCAGCTACAGCTCTTCTTC--------------------CATGCAAAACAGGACACCTCATCacccaggctccatgctggggtttgatggtctc-taaacctcctgaaactgtctaaaaattattgcatatgtacTAGATACCTAAAATTGTCTGGGG s canFam2.chr35 29415662 324 + 29542582 GTGTGGAAAGCAG-----GTGCTGCTGCTGGGGACACCTGCAGGCTTG-GAGCTTGTGGCTACGGTATGTGGCCTCACCTGGCCCAGTGGCTTGCGAGCTCAGAAGCAGAGGCTACGTGTCTGTTCCTGCTGCTGGGACGGCACATGCGATCTTCAGG--------------------------GCCAAGTGTCAGTGA----------GTGAGCAGCTCAGCCTCGGCTCCCATCCACGCCATGCCTGACCACCCTCACATACAGCAGGGGTCCTCA-----CAGGTTCCACAGCAGGCTT--AGGGCATCATGAGCCCCCTGACACTGTGCGAAAACCATCTCATGTGT--TGGATACAT-GAGCTGTCTGGGG a score=10066 s hg19.chr6_ssto_hap7 1500581 453 + 4928567 atcatcaatagatgctaaaactattaggtgaaaagttttgggggatgagatagtacccatggtgccaaagcaccaatgaatggattacttcctgacataccttcataaggaagagatccagtggttatcttaactaagtgaccaaatccagcgtcatcagcagacggggcaaagtggcatgtgctttctggcatggcactatatgaatcacacaacattacctatgaagtgtttgtgccaaaaatgtttgacttgaatgaatctagtcaagactttagatctaacttccagtttataaaaaatataaaggaaaggaataCTCTGAAGTATGTTATAACTGAAAAAGTACCGATGGAGGAAT----TAAACCACaccataaggaaagaaccagataaatccagaatgctggacattgcacatggcaactggcctagtcttttaaaaagtcaatgtcat s canFam2.chr35 29416017 381 + 29542582 ATCACCGACGGACACTACAGC-------AGGAGGGTGTCGGGGGTCAGGGTAAGTCCCAC-GTGCCAGG----------------TACCACCAAGCA------CATAATGGAGACATGCGGGGATCGCCCCAAGC-AGTGACTAAGCAC-GCATCACTAACAGAC-ATACAACCTGGCATCTGCCTCCCCAAACGGCACCACATGGATGACACGACAGT-CAGGAGAAATAATCCTGCCAACGCTGTTTGACCCGAAGGGATCTAACCAAGACTTGAGACTTTACTTCCAAGTTATGGAAAATATG-----------------------------------------ACAGATGGAGAAatgacctgaaccacatcacggggaaacaatcagataaattcagaacgtgggacgttccacg-gacaacaggcctgacctttacagaagtcaatgtcat a score=7521 s hg19.chr6_ssto_hap7 1504038 628 + 4928567 CCCAGAGAGGTGCCCTGGTAGACAGTGAATCCCAAATGTGGACTCTGGGGCCCAAGAAAGTAA----ATGGAGAGGCCTGGGTTTTCATCCTGGCCTCCAGGGTACCAGTTCAGGCCTCTCTTGAGTATCCCAAGCTGCTTCT--CAAGCATATGTCTGGACCTCCAAACAAGAG---CAAAGCACCTGTAATCCCAAAGCACTTAGCCTAGAGCTCCATTCCCTGTGGGTACTCCATTTAAGGGCTCCTGGGTCCCAGATTAATCCCCATATTTTAATCTGAGATAAGCAAACTCTCCATGGGGTAAACTTCCGTGAGACACCTCTAACAAACCTGGAGAGGCCAGAATTCGGGGCAAAAAGCAAGTGATCTGGATGTGCATACTAG--GAGTGACTGCACCCCTACTGGCCAGGCCAAAGGCCTGGATCCCAGGCTGT--CCCAG--GAGATCCCAGTGACTGT-GGATGATGCGTTCTTGTGGTCACACTTGGCTTACTTTCCCCACGGAGCCGAGCATCAGTGGTGCTCTGAAGCACAGTGCAGGCCACAAAAACT------ACCAGG---------GCTCTGAACGCTAGAAATCCCCACAGGGCTCAAAGAGGGGCAGGAGGTAGCAGCCAGCTGGGAGGTGGATGAGACAAG s canFam2.chr35 29418529 559 + 29542582 CCCAGAGAGGGGACCCAGGGCACACGGGGTAC--AGCAGGGACTCCATGGCCCAGAGAGGTGCCAGCATGGAGGGACCTGGAGGTACACTCTGGCCTCCAG---------------------------------ATTGCTTCTCACAACCACATGTGTGG--CTCTGAACAGGAGACCCTTCTTTCTCATCATCAGAAGGCACCTGGCTGAGCACTCTAGTCCCTG-GGGAAACCCACTTAA-------TGGGAAACAGGCCATTCT---------------AGA-AAGAAAGGTCTCT-------------------GACACCACTTACTAACCCAGAAAAGACAAGATG-------------ATGTGATGTGGGACTGGTTAGCAGACGAGGGGCTG-GGGCTTGCTG---ATGCCGCAGGCCTGGGCCCCTGCTTATGGCTTGGCTGGGCACCCAGTGGCTGCAGGGCACTGCATTTGTGGGGTCAGGGGTGGGTGTTGCTCCCC-CAGGGCCAGGCATCTGTGCTGTTCTGAAGGCCAATG-AGGCCACATAAACTGTCGGCACCAGGATGCAACATGCTCTGCACAGTGGACAGCCCCATGGGGCTCTGCAGGGGCACAGGGGCAGT-GACAGCAGACAGGGGGACAGGACAGG a score=30812 s hg19.chr6_ssto_hap7 1505419 1396 + 4928567 gagggtttaagcagcaggaTGTTGAAAGTTATTCAACAGCTagcagatgtttattaggtgccgactatgtgtcaggcaccgaggttacagcagagaacaaaagtggcaaactccctgtcctaccagaacttacatccagtgAC----CTGAGGAATCCTTTAGAAGCTGAAATCAGATCCAACTGT-GGGATCATCAAACCCTCAAGGGTTTCCTGATTTACATAAACCTCCTCTCCCCTTTGCTGCCCCAGTGCTGCAGCCAC----TCTGGCCTTTTGATCCTCAAACACACTCGGTCACGTGTTAAACTGCCAATCTGCCCGGGTGACCAACCAGGTTAAACCCCTCAATGGCTTTCTGGTGCTCCAGGAATAAAGTCAAAACTCCTGTCCTTCCTTTCTTCTGTGAGGAGGCTGTCCCAGGAGATCCTAGCTGGATTCCCAGataatcatggcccagcctgtgtctccaggctcatttcctgccactccccac-----ctcaaactcacagccaaaccaaaccgctctccatgcctcaa--agtgctatgctctttcctggctaagcccttcgacaatgtaattccttctgcctagaacaccatccctttcccacttagcaaatgccttttctagcttgaagtctcagctgaaagccacctcctctggcaattctttcctgacctgtcagattgggtccacatgtagt----ctagttatacagccccaaaacaccccatgctgcaccctgtacttctctgcagttttaagtcctgacttattagtgtaattactcgcttaacaccagctttttccatgaaacaaggagagagattgtgtctgtcttatccccagaatcta-catattacttggcacagagtagacaataaaAACTGACTGAGAAAACAAAGCACA----AGCACAGAGTATCTGACACAAAGAAGATGCTTCCTACACATCTGCTGAAGGAATGCGAACAATCTTAGCCACCTGCCCTTTCTCTCCAGCAAGATGGTAGTAAATTGGTAGAGAGAGAAGCAATTTCTTCATATTCCCTGTAGCAGCAAGAACAGTGGGCTGCACGTCA--CCAGCAAATCATC--------GTATCCAAGGTTTCGCTCCAGCAACTTACAGAAACCAGG--AGAAGAAAAAGCTGTGTCTGAGAAAATGGTTGTTGTGGAGTAAATTGTAATAGTGAGaatcactccttcccttttctttagttttagacctaggta--tacaccccataaacagagtttattttctcaggttttgagcctcaaatgaatggaatttttttccttttttttttttttttgcatgtatttgggtggggggctgtcaacatgtttgtgaggctcatccatgtgattatgagctgattttactta--attgctgctctctaactatacaatttt s canFam2.chr35 29419105 1271 + 29542582 GGGGCTCTGAGCAGCAGG-TGCCAGAGGTAAACCAAAAGGTTAC-GACACAGGCTAGATGCCCACC-TGTGCCCACCACTGAGGATTTGGCAGCAAACAGGTGTGGTCAG-TGCCTACCCTCCCAGAGCTTCTATCAGGTGATGCCACTGAAAGACCCTTTGGAAGCTGAGACCAGAGCTGACTATGGGGGTCACACAGCCCTCAAAGGGGTGCC----------ACTCGCCTCTTCCCCCCACGGCCTAGGTCC--CAGCCACAGAGGTAGGCTCTCAGCTCCCCAAACAC---TAGCCACATGTTCAGATGCAG---TGCCC-GGTGA-----------AAACCCCTCTGATGCCTTGTGAGGCTCCAGGGGTACAGTGGAATCTCTCTCCCACC----------------------CCCAGGA----------------------------GGCCCAGCCCTGGtctgcagcctcatttcctcctgctgtccacttaggcctgaccccacaggcaaactgaagc-ccctccatacctccagcagggccacgctccctcctacctgagccctctgaatatgctactccctctgcactgagcaccattcctcttcc--------------------agctggaaatacctgctgaaggccatgtcctctggcaatgcttccctgagctgataggctgagaccacatgctctgccacctgtgaca----cccaaagtaccccacactgctcc-------tctctgca-ccccgagtcctggctaagtcatgtaatcagctgttgaacaccagctctttctgtcacatttgcacagagactgtgtctgccttatccccagagcccagcacagcatctggcacaGGGGAG-TGATAAACATGGGCTAAAGGAGGTAAAAACAGGACAGGACTGAGCACCTGAAGCACCCAGAGGGCTTCCTACATGTCGGCTG--------------ATCCTCGGCACGTGTCCTATCT-------GACACAGTGGTCAGTTACTAGGGAGAGAAGCGATTTCTCC---TGCCCCCAAGCAGCACCAACGGCTAGCTGCATATCATGTCAGCCACTCTACACCTTCCTGTACCCAGGGTTTGGCCCCAGGCAC--ATGGACGCTGGGGTGGGAGGCAGGGCTGGGTCTCAGGGAGTGGCTGCTGTGG---CAAATGTCACAATGGGGATCGTCCCTGCC---TCCCCTCACTCTAcacccaggtaggtatgccttcaaaaca-agtttcttttccctggttttcagcttcacgtggacggaa--------ccctactgcatttttctgca-------gggatgcacatcaacatcatgcttctgaggttccttcctgtgacgatgagcagattttgttcattcttattgctctctgactatatcattct a score=6740 s hg19.chr6_ssto_hap7 1506824 487 + 4928567 ctactgatagccatatgagttgtttccagtttgggacaattacaaacactgcttcagtgaatatttctgcatacatgttctagcacacacaggcaagatgtaccctcaatttgactaagcaggccaaactgtttccaaagtgactatagtgctatgtagtctgctcagcaggctatgagcactcatgatgccccacagcctcaccaacacctgataatatcagctttaat--ttttgccactctggaggatgGGATATAGAATATCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTAACTCCCCAAAAGGAAACAGCATGAGACAGGCCCAATAACAGGCCAAGGAATCCTATAGCA---GCAGACCAGATA---TTGTGCTCCTCGACCCAACCAGTAAATGTTGTAAATGTTTATCTTTGGGGAGAGAAGGGGAAGGGCCCACCCAGCTTCTGTTCTTCTTTCCCTTGGT s canFam2.chr35 29420817 416 + 29542582 CTTCCGACAGCCACCTGGAGCACTTCCTGTTTGGGACAATCACC----CTGCTCTGG-GAAGGTCTGTGTCTGTGTGCCCTGGTGCGTTCGAGCAGG-----------------TCAGGCCACCCACACTGAACCCAC---------------------------------GCTGAGGGCACtcacactgctccacagccctgctgacacctgctactgtcagcttttatggtattgccagtcaggaggacgagaaacagacgctcatggtTTGTGTGTATTGGTGTTTAATGCTATTAGAGAAGAAGAGGG-ATA-----------GAAGGGAAGAGGCATGACACAGGCAGAGCGA-GCGCCCTGGAGCCTTCCAGCACATAAAGGTAGGAGAGCCCTGTGCTCCCTGACCCAGA-AGCAAGTGCTACAAATGTTTATGCTTGGGGAG----------GGGTGCAACTCCTTTCCATCCCTCTTTCTTTTGCT a score=8548 s hg19.chr6_ssto_hap7 1507311 230 + 4928567 AACTTACCATCTATGAGTTAGTGAGATGGAGACATCCTAACCATTAAT---CCAGGGAAAGGGAGGAATCTAAGCCATCAGCAAGGGAGTTAGTGCTtttcatcaaatttgagacacctgtgacatcacattttagcatctctgaaatgtgatcaattgcatgtcataatttaactggcaaaatatttttttgatgtggagcataaaataagggcacatAAAAGATTTGGTGG s canFam2.chr35 29422276 210 + 29542582 AACTCAACATCGAC-AGTAGGTGGGACAGAGATACTCTTACCATGCATTTCCCAGAGAAAGGGGG--ATCTAAGCAACTAGCAAGGGAGTTAA-ACTttacatcaaatataagaaatccatgtgcttacatttcagcacctctgaaatgtgatcagtatgatatcataactcaactggaaagacatgttttctatgtggagcata---------caca----------gatgg a score=5484 s hg19.chr6_ssto_hap7 1507786 118 + 4928567 ATAGCATCTTAGATTTGGTGAGATGTGGCATATTTCCTAAAAAGTGCTGCCAGGATCATCCTTCTAGCACACAGGATCTCATCCTTGTTATTCTCCTGCTTCAAATCTCCTAGCTGAg s canFam2.chr35 29422486 112 + 29542582 acagcatcttagatttgctggaatgtggCCTATCTCCTACAAAGCACCACCAGTGGTGTCCTTCTAACA-----GTTCTTGTCCT-GTCACTCTCCTGCTTCAAAGCTCCCAGTGGTG a score=6566 s hg19.chr6_ssto_hap7 1508433 268 + 4928567 ATCCGGCTAGCCCCAACTTACCCATCC-AGCCCCAAATCCCTCCTCGTCCTACCTAATTCTCTGGCCATTAGATACACTGAACCAGGAAGACAGCCCCTTCTTCA--CTCCCCACTCTCCACCCATT-CCCTTGTACATGCTCTTCTCTCCAGTCCAGCGCATCCTTGAAGGCTTGAATACAATTTGTCCCCTTATCTGTGAGGTGTTTCCTGTACCCATCCCACCTCTGAGTTGAATGTATCCCTC-------CTCCTGCAGCTTTGCATATACTGTA s canFam2.chr35 29422612 258 + 29542582 ATCTGGC--ACACCGAGTCTCCCAGCCTGGCCCCCACCACAGCCTCACCCTAA----------AGCCG---GCTACACGGAGCCAGGAAAACAGCTCCTTCCTCAGGGCCCCTGCTCCCCACCCCCTGTCCCTGTACACACTCTGTTTTCAGCACCAGCTCATCTCGAAAGGCTAGAATCAGACCTG------TACTGGTGAGGCCCTCCCTGTGTCCATTTCACCCTCCAGCTGACCAGCTCTCCCTGGGTGGCTCCTGCAGCTCTGCATGCATTGCA a score=8026 s hg19.chr6_ssto_hap7 1509167 215 + 4928567 aattgatatttttatctgtcttctctcccaccagaatgtgaacccaaaggtcatgcctcactgacctttttatctccaatatctggcacaaagtagggggtctgcaaatgtttgtgaaatgaatgaCCTCCTCTAATTCCAGAGCCCTGCCATCTCCATTCTTCCCCCTTTCACTACACACCCCCCTTTCCCACATTAAAATTCTGCTTCAGCAG s canFam2.chr35 29422899 210 + 29542582 AGTTGACATGTTTACCCATCT-CTCCCCAAACAGGAGCTGAGCCCAAGGGCCATTCCTCACCAGTCCTCTTATCTCCAGTGTCTGGCACAAAGTAGGTGGTCCTCAG-TGTTTGTGAACC-AGTTACCACCT--GGCTCCAGAGCACCATCCTCTTCTCCATCCCCTCCCCCACTCTATGCTTCCCTTGTCCACTTCACCATCTTGCTTTTGCAG a score=35116 s hg19.chr6_ssto_hap7 1509420 1328 + 4928567 CCACACACATTACCTAGATCTCTCTTGGCCTCCCTCCACACACACACAATTTTGGGGGGAAGAACAAAATTCCATTTCTATAAAGCTGGCAAAATCTAATTCATCCTG-ATGCCAGCCAATTTATGTTTTTGTCTTCTCAAACCAACTTCCCATTCTCCGTGTCTTTTCTATTCTGATCCTGGGGGGGTCCAAGTCTGAAGTCATTCCAAGAAGCCTCAATACAGACCATGGACTCTCTTCGGGGGTTTGCAGTGTCTTCTGTGGTGGTCACACACAATCTGAGTCCAACCTGTTACTCCCCTGCAGGAAG-TGATATCTAAGAAGTCACCCACTGCCTTAGGCCTTCAGTCTCCTTACCTCTTAACAAGGGGAA----AATATTTTGCCAAGTTTACCAGGCTATTTGAGGTTGAGGCAAAGTCACATAAGTACGAGTGTCTCATTAGCAAAAAGCTCTATAAA----AATACtatgaaagagcacaggagccaatgtgaaaagagctcccaacagccaaagccac------agtaatttgagcaacaaaattaagtagtattggattataaaccaaagtataaaataaatgtccctgagtctacactga-aattaatgattgaataaattaataaattggggagaagagagaaacaaatcttccatgcagaataactgcaaacaataatatgtagatacttgccctcaagaagggggaatataactcttggctccctaggtatgggctgcacttagtgacttccttctaaagaggaca-atacacgcaaagagtggaaaag---agactaactgtacagtggagaaacctgaaaaacactatctc-----acccaaatcaatattaagtcataaatcatgtt---agtacatgcccttgatacgatgggatgataatggcaatctacctctgtggtcttcctcccagttacccataagcccagtcttaggagaaaaacatcaaattccaatagaggggcatcctacaacatacacgaccagtattcttcaatgctgtcaaggt-catcaaaacaagtct-----gagaaactcccacagccaagaggagcataaggagacatgacaactaaatgtaatgtggtaacctccatgggatcatgaaacagaaaaagtactgaggtaaaaactaaggaaatctgaacacactatggactttggtca-ataataatgtattgatattggttaactgcaacaaatgtaccacactgaggtaagatgttaataacaggggacccggtttggagcatgtgggaagtttgtactatcttctcaattct-tctgtaaatctaaaagtgttgtaagaaataaagtctacttAAA s canFam2.chr35 29423424 1253 + 29542582 CCACAGACCTTTCCTAGATACCCCCCTGCCTCCCTCCACACACACT--GTTTTGGGTTAAAGTTCAACATTTCATGCCTACCAGTCTGGCGAGTTGTACTTCCTCCTGGATAACAATCAAATTAAGCCTTTACTTTCCAAAGCCATTGTC---------------TTCCTGTTCTGATCCCCAGG---TCTAAGTCTGAAGTCTCCTCAGAAAACT---GTTTGGACTCTGGACT-TCCGCTGTGGTTTGCAATGTTTTCTGGGGTGACCAGCCCTCATCTGAGACCAGCCCATTGCTCCCATGTAGGAAACTGACATGTAAGAAGTCATCCAGTGCTCCTGGGCCTCAGTGTCCTTACCCCTTAAGGACAGAAATAACTATATCTTGTCAGGCTCATCACACTGTGTGAGGTTCATGTGAAGCCCCACAAGTGC-----TTTCAACAGCAAAGAGCTCTACAGACACTCATGCTAGGAAGAAAT---ggagccaacatg-taagagcttccaatcatcaaggctacaacttgagcaa--tgagcaacagcatagagtaatattggattatcacccaaagtatcacatcaatacccacgagtatgtgctgataataaagggctgaataagtcaatcaataaaggacaagagag--actaatc-tccatgca-aagaattccaaataataa-acataaaaacttgtcctcaa----ggagaatctagcc-----ctccttgggtgtgggtttcac--aggcacttctctccaaagggtaggcatgaaaacggggggtggggggggacagagtaactttacagtggagacacctggcaagcactacatcaggtgaccaccaccagtgtccagtcacaggccgtgctgacagtatgtacccttgctgccatgccaggagcagggccacctac--ctggggt-------------------------gggcttaggagaagaaca------tccaggacagaggcatctcacagcccgcatgaccagcattcctccaaactctcaggatcccccagaacaagcctcagcggatgaagtgcca-agccaaggggaccataggagggcatgctgaccccatggaacctggtaacctggccgggatcctgacacggaaccagtgcctagctgaaaactcggtgaatcccaaca-actatcggcaatagtcacacaacagca----ggggttcgttagctgtgacagatgt------ctgaagtaag------gtaacgtgtaatacgggataaggggcttggggaactc-tactgtcctcgcaattctgtccgtaaacccgaa------GTAGAA---ACAGTCTACTCAGA a score=10747 s hg19.chr6_ssto_hap7 1511481 621 + 4928567 CCCCCTACTCACCG----GTCCCGAGCTCCGGGCCGCGAA-TCCCGGCCGGCGCCCCTCCTCTCTCACGGCGGTCTGTTCCGGGTCCCGCTCCTGCACGAGCAACCAGCGCGACAGCTCGTCCCCGCCCCGTAATCTCCCGGCTATTCGGGGCCCTTCGCCGAGATTTCTCCCGGACCAGCCCCGGGATTGGCTCCTGCCGAACTTCGCCGTCCAATGGGAACCTTAGTCTCTT-TTACGTCACTGATCACCGGGCTAATCCCCAGACAGCCGCGGGCGGTGGGGCACCAGGGGCAGCGAAATGGAAACTGAAATCAGGCGGGACCGAGGCTGCGCCAAGAGCCGCAGCCTGAGTTTGGCGCGTAATTGGGGTGGCCTGTTACACGGTCTAAGGGAGTAAATGCTAAGGCTTAGGAGTCACCTACGTAGGACTCTTGAGAGGGCAATAATCCCCTTTCCACCTCTCGAGACCCCTCACTGCCCAACTCTGGCCTTATGCTGGATCAGGGTCCGAGGGCGCTTTGAGGCGAAGGTGGCGCTCGCCAGGTGCTCAACATTAAATACGAAGTCCCCGCCCCTAACGTGGCCTAAATTTGCTTCCAGGACAAAGCAGGATTTTAGCAAGCA s canFam2.chr35 29425027 504 + 29542582 cccgcgACTCACCGCACTGCCC---GCTCTGGGCCGCGAGCTCCCGGCCGGGGGCGCTGCTCCCCCGCGGCAGCCAGCTG-GGGTCGCGTCCC-----------------------CTCGGCTCTGCC--------TCCCGGCTCCCCGAGGTCCG-CTCCGAGATTTCTCCCGGATCCGCGTCCCGATTGGCCGAGTCCGCACGCCACCGCCCAATGGCAGCTCGAGACGGGCACTACGTCACCGATCACCAGGCAAATccgcgggcctccgcagggggcggggcggccggggccg---AACGGA-------------------CGAATccgcg----------------------ggcgggcgggcggggcg----------cgcTCC-----------CGCGAAGGCCTAG------------TTGGGCCCC----GGGGCCA-GACCCCCAGGCTggcgcccccggccccccccggcccgcccccTGCCTG--GATGGGTCCGGGTGGGCGGGGGCCTGCGGCCGACGGGGGCGC--GCCAGAGGCTCCGCATGAAGTA-GGGCTCCCTGCCCCCAACGTGGCCTCATTTTGCTTCCTGAACCCGGAAGGTCTTTCGCAAGCA a score=11876 s hg19.chr6_ssto_hap7 1527390 185 + 4928567 CTCTCAAGATGTGGAACAAAAAAATAGCACACATATTTTTGTACCTGCCTGGCAAAAATTCCCAAAGCTTTGCTTAATTCTATTCAGGTTGTTGAACAAAATTTACATTAGCAACAAATACCAGGGAATGAAAATAATGCACTTTTGTTGATAAAGTAACAGATTTTGCCTGGTTGTCTTTGGAG s canFam2.chr1 48007754 184 - 125616256 CTTTTAACAGGTGGAACAAAAAAATAGCACACATAGTTTTGTATCTGTCTGGCAAAAAT-CCAAGAGCTTTGTATACTTCTGCTCAGTCTGGTGAATAAAATTTACACCACCAACAAGTAGCAGGGAATGAAAATAATCCATTTCTGTTGATAAAGTAATGGGTTTTGTCTGGTTGCCTTTGGGG a score=28720 s hg19.chr6_ssto_hap7 1536396 505 + 4928567 AGAAAGTGATTTCTCACTTTGAGAGTGAACTCTTTGCAGGACTTGAGCATAGTGATCACAACTGCTGCCTCCCCTCTGAGAAATCTGGAGGATGAGGTTCT-----CCATCTGTCTTGACTACTTGAGAGACCCAGTGACCATTGACTGTGGTCATGTCTTTTGCTACCACTGCATCATTCAGGTCT-----GTGAATCTACTAGGCAACCATTACATTGTTCTCTGTGCAAGCCAGCTTTTAAGAAA--AAATATCTGCCATGTGTGGCAGATGGCCAACCTGATGGAGAACATTTGGAGAATGAAGGTAGATGAGGAGAGACAACCCAGAGAGGAAAGACCACCTGAGCAAAAAGCAGAGAAGCTGTGTAGGCGACACCTGGAGAAGCTCCATTAATGCTTCAAAGGATGACCAGCAGATGGTGTATGTGATGCGTT-GGAGTCCCGAGAACACAAGCACCATGCTGCTGTTCTCCTAGAAAAGGCTGCACAGCCTCGTCGGGTAAGAATCGTGTT s canFam2.chr17 24054870 514 - 67347617 AGAAAGTAATTGCTTGCCTTGAGAA-GGACTCTGTCCAGGTCT-GGGCACAGCTATCATGGCTGCTGCCTCCCCTCTGAGAGAGCTGGAGGGTGAGGTGCTGTGCTCTATCTGCCTCAACTACTTGAGAGACCCCATAGCCATCAACTGTGGTTATGTCTTCTGCTACCACTGCATCATTCAGGTCTTCCTAGTGAATCTACTAAGAAGCCATTGCATTATTCTCTTTGTAAGATTGTCTTTAAGAAAGAAAATATTTGCCATGTGTGGCAGATGGCCAGCCTAGTGGAAAACATCTAGAGGATGAAGGTAGATGAGGAGAGACAACCCAAAGACGACGGACCACTTGAGCAAAATGCA-AGAAGCTGTGTGAGGTACATTTGGGATAGTTCCACTATTACTGC-AAGGATGACCAACAAATATTTTGTGTTATGTGTTGGGAGTCCCCACAGCATAGGCATCATACTGCTGTTCTCCTGGAGAAGGATGCACAGACTCATCAGGGTAAAATTTTATT a score=5577 s hg19.chr6_ssto_hap7 1539438 93 + 4928567 TAGGGCAAAATTCTAAACCATCGGAAGATTCTGAAGGGATACAGGGATAGCATTCAGAATTCTCAATCTATGGGAGAAGATGAGATTCAGGCC s canFam2.chr17 24055569 85 - 67347617 CAGGGTAAAATTTTAAACCATCTGAAGATTCTGAAGAAATATA--------ATCCAGAATTATCAGTCCACAGGAGAAGATGAGATTCAGGCC a score=12447 s hg19.chr6_ssto_hap7 1539787 235 + 4928567 CTGGAGACAACATTTCAGAACCACAGGCAAGACATTGTATCAGTGTTTGAATAGGGCCATCGGTTTTTGAGAGAAAG--------GGAACAGTACCTGTTGGAGC-AGCTGGTAGGGCTAGAGCAAGAACTCACCAAAAGGAGGAACAGCCGTGTCATCAAGGGTTCTGAGGAGGTGGTCCAGCTTGGGACCCTGATCACTGAGTTGG----AGAAGTCTCGGCAGCCAGCACTTGAACTTTTGAAGG s canFam2.chr17 24055654 245 - 67347617 CTGCAGACAAAATTGTAG---CATAGGCAGGACATTGTGTCAGTGTTTGAACAGGGCTACCAGTTCTTGAGAGAAAGTACCTATTGGAGCAGTACCTATTGGAGTTAACTGGAAGGGACTGAGCAAGAGCTTGCCAAAGGCAGGAACAGCCATGTCACCAAGGGCTCTGAGGAATTCATCCAATTTCAAACCCATATTTATGAGTTGGAAAAAAAAGCCTCAGCAGCCAGAACTTGGGCTTTTGCAGG a score=15383 s hg19.chr6_ssto_hap7 1556043 554 + 4928567 aaccatTGTAAGTGAAGAAATGACACGACCTGAGTCACATTAGCAGAACTGCTGAGCACT----GTGGGGAGAACAGACAT-GGGCAGGAAGTGAGGGA-CAGTGTTAGTGCCACAATTCAGgggtgagagggtggcagggactaaggggaggggagggtgtgagggatgagaggggcagagagaagggctggagagacaggaagtgaggaaaaggagca-agggaAAGGACTCTAAAGCAGTGGAG----------------------------------------------------------GAGCCTAGCAGGGGGTTCTTGACATGCATTCGGTATTTAATACATTTTGTGGGACTGCC-AAAAACTAATGGCCTCCTCATGATTAAAAACATAAGAGTAAAAAAATACCAAGTATGCAAATAAAATGTGCACACTGCTTAGATGTGCATAATTCATAAAAACAAGCAGTGCTTAAGCATTGATGATAGGCATTTTGACTTCAG-------TGCAATTTTGAGG-------------------CTCCTTGTTACAATATACAGTAACAAATCCTGCTTCTTTGTATTGAG---ATGTCCTGGACTCACACAGGGAAACTCGGGCTATGGAATGAAGATAATTTT s canFam2.chr12 71489335 620 - 75515492 aagcattttcagtgatgaaatgacacaacctgactcatatcagcaggatcgctgtctgtcccaggtggcgagagtggccttagggtagcaagtgttggagtggcagcagggccccaat-caggagTGAGAGGG-GGTGGAGACTC--GGGATGAGAGGCCCTAATTGATGAGAGATG--GAGAGAAGGGCTGCAGACCCAGGCGG--AGGGAGAGAAGCAGAGGTGACCAGTTTTACAGCAGTGGAATCCTCACATTTAAATACGTTGTTATACAGCCTTTTTAAAAATGGAATCTCTATTTCCAGGTCTTAGCAAGATATTTTT----TGCATCTAGAATTTACTATATTCTGTGGGGCTGCCTGAAAATCAGTTGCCTCCTTATGC------AAATCAGTTTAAAAAA--------TGTCTAGACGAAATATGTGCACTGCTTAGATGTGAATAATGCATAAAAAGAGGCAATGCAGGAGCACTGGCGAAGGGCATTTTGACTGCATGGAACGTTGCAAATTTGAGGTGCTTCAAGTTTGTACATGCTCCTGATCGAAATGTATAGTATCAAACCATGCTTCCATGTATTGAGGATATGAGGGGAACTCACA---GAAATTTGGGGCTATGGAATGAAGATTGTTTT a score=5886 s hg19.chr6_ssto_hap7 1556597 234 + 4928567 AAA-TGCAACAACCCAGAGTCATGGATCCACAGTCTGGGAAAGTAAACTTAGAAGCTTTGTGACTCGAATTGCAATGCTGTTTGGATACACTTATATATGAAGCAGGCAAAATCAGGTCTTTTACAGATTAGAATCCTGATCATTCAGGGGTT----AGATTGTGCTAACCACTGTATTAATAAACAAACAAACAAAAAAACCTGGTCACTATGAGAATCTCTATCTTGTGCCTTCAGC s canFam2.chr12 3985577 207 + 75515492 AAAGCACAAAAACTTAAAGTCTTGGCT--------TGGGAAAGTGAAAATGACAGCTTTGGTT-----ATTTCAAAGCTGTTTAGGCAAATTTATACAGAAAG--GATAAAATCACTACTTTGACACATGCGAGTCCCGATCTCTCAGGGGTTGTCAAGATTATG-----------GTTAAGAAACAAG------AAGAAAACTGGCCTCTGTGAAAATCTCTAGCTAGTGCCCCAAGC a score=73807 s hg19.chr6_ssto_hap7 1556831 2118 + 4928567 CACAACTTCACCAGGTTTAAAGAGAAAACCCCTTTCTCTACACCGCCATTCCCAAGGCGAGCTCACTCTCTGGCATCAAAGTTCCCTGGGGTGAGTTTTCTTCTAGGATAGTCCAAGGGGAGAGGTAAGGAGTCGGAAGTCCAGTTCAGGGACGAGGATTCCAGGATGAGCGT---GAATGGGAAGGGGCTGGGCCCAGCCTGGGGGTTCTCTCCCTAGTTTCCACAGACAGATCCTTGACCAGGACTCAGGCAGTCAGTGTGACAAAGAGGCTGGCGTAGGAAAAGAGAGGTCAGGACAAAGTCCCAGGCCCCAGGCGTGGCTCTCTGGGTCTCAGGCCCCAAGAGCGATGACTGCAC-TGGGGAGTCACAGGGTTGGGGATTGCCCACTCCCCTGAGTTTTGGTTCTCCCAACCTTCTTC------------CTGGATACTTGTGACATAATCCCACTTCTCACTCCCATTGGGTGCCGGGTTTTTAGAGAAGCCAATCAGCTTCGCCGCGATCCCGGCACTACGATCCCGGCACTACAGTCCCGGCGCAACCACCCGCACTCAGATTCTCCCCAAACGCCAAGGATGGGGGTCATGG---------CTCCCCGAACCCTCCTCCTGCTGCTCTTGGGGGCCCTGGCCCTGACCGAGACCTGGGCCGGTGAGTGCGGGGTCGGGAGGGAAAGGGCCTCTGCGGGGAGAAGCGAG---------------------------------------------Tggcccgccc---------------ggcccggggagccgcgccgggAGGAGGGTCGGGCGGG-TCTCAGCCTCTCCTCGCCTCC--AGGCTCCCACTCCTTGAGGTATTTCAGCACCGCAGTGTCCCAGCCCGGCCGCGGGGAGCCCCGGTTCATCGCCGTGGGCTACGTGGACGACACAGAGTTCGTGCGGTTCGACAGCGACTCCGTGAGTCCGAGGATGGAGCGGCGGGCGCCGTGGGTGGAGCAGGAGGGGCTGGAGTATTGGGACCAGGAGACACGGAACGCCAAGGGCCACGCGCAGATTTACCGAGTGAACCTGCGGACCCTGCTCCGCTATTACAACCAGAGCGAGGCCGGTGAGTGACCCTGGCCCGGGGCGCAGGTCACGATCCCTCCCCATCCCCCACGGACAGCCCAGGTCCCGGGTCTGAGTCTCC-GGTCTGAGATCCACCCCGAGGCTGCGGGACCTGCCCAG-ACCCTCGACCAGGGAAGAAACTCGGGCGCCTTTACCCGG-----TTTAATTTCAGTTTAGGCCAAAATCCCCGCGGGTTGGTCGGGGCGGGAGCGGGGCTCGGTGTTCGGGGCTGACGGCGGGGGCGAGGCCATGGTTCTCACACCATCCAGAGGAAGCATGGCTGCGACGT-GGGCCCGACAGGCGCCTCCTCCGCAGGTATGAACAGTTCGCCTACGATGGCAAGGATTACATCGCCCTGAACGAGGACCTGCACTCCTGGACCGCCGCGAACACAGCGGCTCAGATCTCCCAGCACAAGTGGGAAGCGGACAAATACTCAGAGCAGGTCAGGGCCTACCTGAGGGCAA-GTGCATGGAGTGGCTCCGCAGACACCTGGAGAACGGGAAGGAGACGCTGCAGCACGCGGGTACCAGGGGCCACGGGGGCGCCTCCCTCATTTCCTGTAGATTTCCCGGGCTGGCCTCCCACCAGGAGAGTAGGA--AAATGGGACCAATGCTAGAATATCGCCCTCCCACTGGTCCTGAATGGGAAGAAT-------CCTGGGTTTCCAGATCCTGTACCAGAGAGTAACTCTGAGAGCCCACCCTGCTCTCTGGGACAATTAAGGGATGAAGTCCCTGAGGAAATGGAGGAGAAGACAGTCCCTGGAAT-ACTGATCCGTGGTCCCCTTTGAC-----CCCTGCAGCAGCCTGGGGCACCAGGAATTTTCCTCTCAGGCCTTGTTCTCTCCCTCACACTCAGTGTGTCCGTGGCTCCGATTCCAGCTCTTCTGAGTGCCTTGGCCTCCACTCAGGTCAGGACCAGAAGTCCCTGCTCCCCCATCAGAGA----------------------------------CTCGAACTTTCCAAGGAATAGGAGATTATCCCAGATTCCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTT-CCCCATCCCAGGTGTCCTGTCCATTCTCAGGATGGTCACATGTATGCTGCTGGAGTGTCCTATGAGGAATGCA s canFam2.chr12 71490103 2104 - 75515492 cACAACTTCA---GGTTTAAAGAGAAAATCCCTGTCTCTCCATCTCCGTTCCCA-GGCGAGCTCACTATCTGGCATCCAGTTTCCTGGCGGTGATTTTTCTTTCAGAAGAGTAC----GGAGAAGTAAGGAGT----AGTTCAGCTCAAGT-CGAGGGTTTCC--ACAAACGTAAGGGACAAAAAGGGGCTGATCCCTGCCTGGTG--TCTGTCCCCGGTTTCCTCAGAAGGACCGCCGGCCAGGCCTCAGGGAGACGGTGAGAGAAAGCGCTCCGTGCAGGTGGAGGGGAATCAGGGCAAAGCCC-------------TGGGTCTCCGGG----AAGACCTA-GAGCGGTGTCTGGGGGCGGGGAAGCCCAGTTCCGTCCCCCGCGCGCCTCCCT------CCCCTCTCCCAACCCGCCTCAGGGCCTCCCGCCTGGATACTCGGGACTTGGCCCCAGCGCGCACCCCCATTGGGCGGCGGGGTTCTAGGGGAGCCGATCGGCGTCCCCGGGGTCCGGGC-CTGCGGGGCCACCCCTGCCG-----------------GCTCTTCGGGTCTCTG-GAACCTCAAGGATGCGAGTCGTGATGCGCGGCACCCCCCCCCCCCCGCCCCTGCTGCCTTCGGGGGCCCTGGCCGTGACCCTGACCCGGGCGGGTGAGTGCGGG--CGGGAGCGAGGGGACCGGCGGGCGGGGACGCGGGACCCCGGGAAGccgcctctccgccgcccccggcccctcccgcctccgccccgccccgggcatctcccctgggccccgggccccgcGGCGGGAGG-GGGTCGGGCGGGGTCTCA----CCCGTCGGCTCCGCAGGCTCCCACTCCCTGAGGTTTTTCCACACCGCCGTGTCCCGGCCCGGCCGCGGGGACCCCCTCTACATCTCTGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCGGCCACTGGGAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACGGGGAGACGCGGAACCTCAAGGAGACCGCACAGGTGTACCGAGTGGACCTGGACACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTGAgcggcgcgggcccggggc-cggggcACGA----CCCCCATCCCCCC--GACCGGCCGGGTC---GCCCCGAGGGTCCGGGTCCGGGCGTCACCCCGAGTCCGAGGCCCCCGCCCCTCCCCCTCGTCCCCGTCCCGAACCCGCGGGAACT--CCCGGGAGGTTTTACTTTCTCTTTGGACTGA-----TTGGCGGCCTGTCGGGGCGGGGCCAGGG---------------------------------------TCTCACACCATCCAGACCATGTACGGCTGTGACCTGGGGCCCGGCGGGCGCCTCCTCCGCGGGTACAGTCAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACGCGGCGGCGCTGATCACCCGGCGCAAGAGGGAGGCGGCAGGTGATGCAGGGCACCTGAGGAACTACCTGGAGACGACGTGCGTGGAGTGGCTGCGGAGGTACCTGGAGATGGGGAAGGAGACGCTGCTGCGCGCAGGTACC-GGGGCCCCGG----GCCTCCCCGATCTC--------GCCTCAGGCTGAGGCCGTGGGA-GAGGATAGGAAGAAATAGAATCCACACCAGTATATGGCCCTCCCATGCGTCATGGATGGAGAGACTAACTCTGCCTAGGTTTTCAGATCCGGTACTAGAGAGTGGCCCTAAGGGTCTGCCTTTCTCCTAGGGACCATTAAGGT-CACATTCCCTCCAGGGATGGAGGAGGAGACCATTTCTGAAATAACTGATGAGCAGTTCTTTTTGACTCACTCCCTTTGGGAGCCTTGG------GGGATTT---TCTCAGGCTTTGTTCTCAGCCCTGTACCTCAAGTGTTTG-GAATCAGGCCTCACCTGTT-TGAGTCACTTGGCCTCCAGCCAGGCCAGGACCAGAAATTCCTTTTTACCTCTCAAAAACCTGCCTTCTACACTGGGCCATCTCATCCTAATTCTAGAACTTTCCAAACAAGAAGAGATTA-----------TGTGTTCAGGCTGGTGTCTGGGTTAT-TGCTCCTTTCCCCCACCCCAGTTGTCCTATTCATTCTCAGGATGACCACATGAAAGCTGCTTCAGTGGACCAAGACAGATACA a score=93264 s hg19.chr6_ssto_hap7 1558949 2882 + 4928567 AAGTGCCTGAATTTTCTGACTCTTCCCCTCAGATCCCCCAAAGGCACATGTGACCCAGCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCCTCTACCCTGCGGAGATCACACTGACCTGGCAGCAGGATGGGGAGGACCAGACCCAGGACACGGAGCTTGTGGAGACCAGGCCTGCAGGGGACGGAACCTTCCAGAAGTGGGTGGCTGTAGTGGTGCCTTCCGGAGAGGAGCAGAGATACATGTGCCATGTGCAGCATGAGGGGCTGCCAGAGCCCCTCACCCTGAGATGGGGTAAGGAGGGGTGTAAGTTGTCTCCTCTCAGGGAAA---GCAGGAGACCTTCAGCAGGGCAG-GGCTGAGGCCTGGGGGTCAGAACCCCTCACCTCCCTCTCCTTTCCCAGAGCCGTCTTCTCAGCCCACCATCCCCATCGTGGGCATCGTTGCTGGCCTGTTTCTCCTTGGAGCTGTGGTCACTGGAGCTGTGGTTGCT---GCTGCGATGTGGAGGAAGAAAAGCTCAGGTAGGGAAGGGGTGAGAGGTGGGGTCTGGGTTTTCTTGTTCCACTGTGGGTTTCAAGCCACAGGTAGAATTGTGACTTGCTTCATCACTGGGAAGCACCGTCGACACACA-------GGCCGACCTAGCCTGGGGCCCTGTGTGCCAACACTTGCTCTTTTGTGAAGCACATGTGAAAACGAAGGACAAATTTATCAC-CTTGATGATTGTGGTGATGGGGAC---CTCCCAGCAGTCACAGGTCACAAGGGAAGATCCCTACTGAGGACAGACCTCAGGAGGGCAGTTGGTCCAGTCACCACACCTGCTTTCCTCATGTTTCCTGATCCTGCCCTGGGTCTGCAGTCACAGTTCTGGAAATTTTCCTGGGGTCCAGGATTTGCTGTTTCCTTAAGGACCTCATGCCCCATGTCCTCCCTGACCTCTCACAGGTTGTTTTTTTCTCACAGATAGAACAAGGAGGAGCTATGCTCGGGCTGCCTGTTAGTATGGGGGATTAGAGGGCTGCTCCCTGAGATCGTTGGGACAGTGTAGACAAGA--------------------------------TTCCTCCTTTAGCCACATCTCCTGTGGGCTCTGACCAGTTCCTATTTTTGTTCTACCCCAGGCAGCAATTGTGCTCAGTACTCTGATGCATCTCATGATACTTGTAAAGGTGAGACATGGGGGGGCCTGAAGTGGGTGGGGGTGAGGCAGAGGGGACATGATTCTGTTGAGGGGTTCTCTGGATTTAGACATCTTGACCATGTGGTAGGCTGTTCAGAGTGTCACCAGGTACAGTGACTGCCCTGGATTTGTTTATGATTATTTTCTCCTGTAGCTTGAGACAACTGCCTTGAGTGGGACTGAGAGATACAAAATTTCTTCAGGTCCTTCCTCTGACACACACCATTGTAATTTCAAGAGCTCCTGACTTCTATATCTGCACTTGACACGTGAATATATCTATGTGTCTG-----TGTTCCAGTTAGCATAATGTGAGGAAATGGGC-TACTGGTCCACCACTGCCACCAGGACCACCACCCCACACTAACCTGTCCTCTCTTCCCCGGTCAAGTTT-TTTTTCAACAGAGGTGAGGCTGGGACATTTCTATTCATGTCTTAACTTTTAAGTTTCACTGAGCTGCCA---CTTACTCCACTATTCAAAATAAGAACCTGGATATGAA-----TTTTTCAAATTCTTGCCATGAGGTTGGGTTGATTGTTCAA------------TGAAAGGAGAGCAAGACTCTTAAAACTTGAGAGAGGAAGTAAA------ACCTGAGAGCCTTCCAGAATC--CATTTTTGCTGTGCTGGGCCTGTTGTAGGTGGAGACAGGAGAGAGAGGGCTGTGAGGAGCTGAGTGTGGA-CAGCCT------------ATGCTCAGTTCATCATGGAATTTGACGTGGTCATTCATTGGGTTGGTCATCTTCACTGCTCCATTGTTTGTGTCCCTTCAGTAGAACCTTGTTTCACCAGGACCTGTGATCACAGGCACACAAACATTGCCTGGGCCTTGTCCTGTCTCTAGGACCGTGGACAGCAAGGGCTTCATG-GGCTGGGTCAGTCTATGGTCTG-------------------GCCCTAATATTTTGTATCATTATTTTTGGTTTCTTTGTTTCTGTAGAGGACTATGCCTGTTCCTGTTCTGGTGTCTGCGTTCTGATCTCTTTCTCCCCTGGGTGTCCCTCATCTCTGACAGCAGCAGGAGTCATTTTTCCTGTCATTAACCCCACAAGGTGGAAGGCAGCCCCTGCACACAGAAGTCTGTGGTATTAAGAGATGAATTTTCAAGCCCGTGCAGCTTTTACCCTATTTCCAGGGCTCTTTCTTGGATTGTATTTTCTATCTTTTCCCCAACCTTTTTAAAGGAACTAGATTCTGAAATTAGCAGAGAAGAGGGATGCCACAAGTTCTCATCTTAGGTAACTTTCTAGTGGAACTCC-TCTTCTGCTCAGCTCTCCTACCCACTCTCCCTTCCCTGAGTTGTAGTAATCCTAGCACTGGCTCTAATGCAAACTCATGGATCTATAAAGCAAAGTCTAACTTAGATTTATATTTGTTTGGAAATTGGGATTCAT-AGTCAAAGATTGTTCTTTCCTAAGAGGGAAATATAATTGCATGCTGCA----GTGTGCAGAGGGTTGGTGTga-aggagggatgcagggaggaagggagggaggACACACAAGCAGCACTGCTGGGAAAAGCACAGGCGGCCTGGATGTCAGTGTGAGGGGACCTTGTGCTGTCGTTGCTGCAAAACCGCATTTGGCCTGAGGCTATGTTAATAAAGATACTGCCTTTAGAATA-GGAGGTGCTCTACAGTGATGattcattca-----------------------------------gccgacatt-tgctgtctgccagacatatgacagaatgt-ttttgcatctggggaaagtcattgaagt s canFam2.chr12 71498678 2807 - 75515492 AAGTTCCTGAATTTTCTGACCCTTCTCTTCAGATCCCCCAAAGGCAC-TCTCACCCACCACCCCTTCTCTGACTGTGAGGTCACCCTGACCTGCCA-----------------------------------------AATGGGATGGGGAGGACCAGACCCAGGACACAGAGCTTGTGGAGACCAGGCCTGCAGGAGATGGGACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCCTCTGGACAGGAGCAGAGATACACGTGCCACGTGCAGCATGAGGGGCTGGCGGAGCCTGTCACCCGGAGATGGGGTAAGGAAA------------------TCAGGAGCCCTTGTGGGAGAACTTCAGTAGAGTTGAGGGTGAGACCTGAGGGGCA-AGGCCCTCACCTCATCCTCTCTTCCCAGAGTCCCCTCCTCGGCTCACCATCCCCATCGTGGGCATCGTTGCTGGTCTGCTTGTCTT------TGTGGTCTCTGGTACTATGGTGGCTGGAGCTGTCCTGTGGAGGAAGTAGATCTCAGGTAGGGAGGGGATGC---------TCTGAGTTTTCTCA---------GCGTTTCAAGCC-CAGGTAGAAGTTTGTCCTATCTCATTTAGGGGAAGTGCTACCCGCACACATGTGCTTGTCCACTCCATTGTGCAGCTCATTG---CTACATTCACTGTGTAGTAAAGCACGTGTGAGAGTGAAGGACAAACTCATCCCTCCTGTTGAATGTGGTGATGGAATCTGATCCCCAGTGGTCACAGGTCAGAGAGCAAGGTCCTTGCTGAGGACAGACTCCAGGAGAATGGTTGGTCTCATCCTGCTATCTCTTTTCTTCATG-TCCCTGATTCTTCCATAGGTCTGTAGTTAAAGTTTTGGAAACTTCCGTGTGGTCCAGGCTATGA-GTTTCACCTAGGATCTCGGGTCATGCCTTCTCCATGGCACCTCATGTGATGTTTTCTTTCCACAGGTGGAA----GAAGAATTATGCTGAGGTTGCACATGAGTATGGAG-------GGGGTGATCCCTGAAACC-CCGGGGTGGTACAGACAGGACCCCATGGGGATCTTGGCACCCCCCCCACTAGCTCCTCCTTTGGTCTCATCTCCT-TTGGCTCTGACCACATTCTA--TCTGTTCTGCCCCAGGCAGTGACAGTGCCCAGGGCTCT-----CTCTC----TGCTTCTACTGGTGAGACCTTGGAGGGCCTGAAGGGGGGAGTGGGGAGGGGACTGGGCCGTGATTGGGTAGTGGGGATTCTTTGAGTAGGATATTTTGAGCATGTGCTGAGCTGTTGAGAAAGTCAGCATGTATA-TGACTGACCCAAATCTGTTCATGATTATTTTATTTCATAGTGTGAACCAGCTGCCTCGTGGGGGACTGAGTGATGCAGGATTTGTTCA---CTTTCC---------CACC-TTGTGATGTCAACA-CCCCTGATTTCTCTTTCTGCA------AAGGGCATGTCTGAATGTGTCTGAAATATGTTCCTATTAACATAATGTGAGGAGGTGGGCAGACTGGCTCCCTCC--CCACGTGACTCCCCTCCCCCGACAGACCTGTGTTCtgcttttgtgttgcttttgtgttgcAGCTGAGG-GAGAGCGGGTCATCTCCATCCCTGTC------TTTATGTTACACCGAGCTACAACTTCTTACTTCCTTATTGAACATAGGACTGTGGATGTGAAATTGTTTTTTCCAGTTCTTGTCATGAG---GAGCTGATCAGTTAGTCAGATCTGATCTGAAAGGAG---AAGATTCCTAAAGTTTGAGAGAGGAAATAAATGGGAGCACTGAGACTCTTCCAGAACCTGCAGATTTGGTGTACTGTGTCTGCTCTATGTGAGGACAGGAGA-----CGCTGTGAGGAGCCTAGTATGGAGGAGCCTCATGCCCACTTGGTGCTCAGTGCAGCAAGG-GTGTGACATGGTCACTCA----GCTGAGGACTCTCTCTGCTGTTTTGTCCTTGTCCCTCCAGTAGAACC-TGTCCTTCCAGGACCTGTGATCATAGAGACTTGGGCATCACCCAGACCTTGTCCTGCCTCCGGGACCATGGGCAGCAATG---TTGTGTGGCAGGGTCAGCCTAGGATCGGGCCTGGGTTTGGGCTCTCAGCCCCAGCTCTTGGTGT--TTATTTGCTGTTTCTGTGTGTCTGTAGAGGATCAGTCCTTTTCTCATGTTCCTGTGGGAGTTCTGGCCTCATTCATCTTCGGGGGT--CTCCTGTCTGACAGCAGCAGGAGGTGGTTGGCC-GTCAGTATCTCCGCAAGGCCCAGGGCAGCCCCTGTGCACAGGCATCTGT-GTATCCAGAGGTT-ATTTTCAGACTCATTCAAGTCTTATCCTCCTTCTAGGGCTC-------GACTGTTCTTTCCATCGTTTCCCCAGTCTTCTCAGAGGAAC-AGATACTG-GATTGGCAGACAGGAAGCATGCTGTAATTTCTCATTTAAAATCAGTTCTTGTTGTGTTTCCATCCCCTGCTTGCCTGTGCT-----------CTGCCC-------TAGTGATCCT-GTGCTGGCTCCAATCCAAAGTCAAGGTGTTATGAAGCAGAGTCT--CCTTGGTTTCTCTTCGGTTGGGAGATAGCTGTTGTGAGTCAAGGGTGGTTGTTTTTTGAAA---------------ATGCTGTACGTGGTGTGCAGGAAGGTGCTGTGAGAGTGGGGAGGGAGGGAGGAGGGATAGGA-----------------TGGTGAGAGAAGTATAGA-GGCGCTGCTGGCAGCCTGATAGGTCACAGTGCTGGAGCTGCCCCAGAGCAG-ATGTGGTCTGAGGCTGCATTAGCAAAGATACTGACTCTGGAATAGGGAGATGCTCTACACCGGTCACTCCTTCACTGGTTGTGTGAAGATACATGACACTTCACTTCACTCCAACACTGTGTTGTGTG--AGATACATGACACGCCACGTTTTGCATCTGGGAAGTATGGGTGAAGT a score=1525 s hg19.chr6_ssto_hap7 1561831 52 + 4928567 aaaatcagaaaaatct-ctagccttgtggagcatgtgttccagtgggaagagg s canFam2.chr12 3992156 53 + 75515492 CAGGTGAGGCAAACCTGCTGGTCTCCTGGAGAGTATGTTCTAGTGGTCGGGGG a score=20580 s hg19.chr6_ssto_hap7 1561903 1169 + 4928567 atatatgcagagtaaatgaggaaagtg------ttagaaggtgataagtgctgtggaacaggtgatc---agagtatgggttgtgggacagagaaggtagcta---ttgtgccggggttgtcagcgtgggccttgttgggaaggtgacctttgatgaaatatttgaaggacataaaggaatttgtcatgagggtatctggaagaagttttttctagggagtaggaaccttcagtgtcagtgtaccagggcaggatcatgtctgtgtgttctgggaagaacacgggatcgggtatggctagagcagagagtcactgagataaggtcaggggtttggtcagatcatgtgggcatagggctcaagtatgtgggaaggattttgattt-----tgaatgagat----agttttaagcagaataaagacatgccacaacttctcttttaaaaggatcactgtagctgc-----tctgctgagaacagaatccaaaggccggcgatgagcaaggcaggtgggaaaactgtaggaaatgagtgcagtatttcaggctggagatgtcggttacttcaactggggtgtgagcagtggaaatagtgggacgtgattggattcctacta--tttccaatcactttataccgcattttctaatggactaaatctggggtatgagaaagaagagtaaagga---taccaaaaatgtcagactgtgactaaaaa---gagttgccatcagctgagaatgagaag--actagcaggagcatatgagaggaggggacgtcgcaggcagtcactatgggagacgtgggatctgagatgccgctgagaaataccagtgaggtagtcgggttggcagttggacagatgaatctggagacatttaggagaaatagacttgggaggtgatgtcatataa--cagttatttaaagccttgagtctgaatgacgtctccaagggagtgattggctgtagaagagaacaggaacaaggactgaacactaggCCTCT-GTTGCTAAAGGATCTGATCAGACAACACACC--TAGATCAGACTGCACAGTCCTGACCCCACATCTAGAAGGTACATAGACCAGGGAGttctagactttcctgtggacaggaatcacctggacatcaccttaagtctaagctgatctggaatcgagaatgagatttcctacttatataatgttgctgttggcgctga s canFam2.chr12 3992546 1118 + 75515492 gtgtAAGCACAGTAAGTAAGGGAGGTGTAGACATTGGAAGTAGGTAGGAGCT-TGAGGAAGGTGACCCAGAGAGAACCTGCTCtaggacagggacggtggccaccttactgcagggattgg----gggagcctccctgagaaggtgacctgggagaga----ttggaggacat----gaattgtgtaggaggatgtctgggggaagttctttccaggcag--ggaacctccatgctcaa-gctccagggcaggagcctgtcc-catgtttgagggagggtgaggaggcccctggggctggagcagagagcaa-------------ggggatgacatgacatcacgt---catggagcctgaggacagtagaagggttttgagttttctctgagtgagatgtggagttata---agaatgaacagat----caattcatt--------gaatttctttaccagcacctgtttgctgcgtgcagaattgagagg-tgaaggggagcaa--ctagtagggaacctgtaggaccc-agggcagtgtcccaggagggggatgggggctga-acatctggaatgtggggagggaagataataggaaatgagtgggtgctggatatgtttacaggtgaattttgcagcatttcctaaggcattccttctggggggtgagagggagggatcaaggagggcatccggtatttcagactgcaaggagaagtgtgcagtgccttccatggagatgaaggagacactggaatcaggacat--tgggaagcagcatcacagacatccact-tagga-atgtggaatctgggcta----taagaaatgcagctga-----------tgtcagttggatacagagatatcaaga----ttggagaattatacttgggaagtggctccacatcaatcagt--ttcagagccttcagcagagatgaggacaccaagggtgtga-tggccatagaagagaa-aggaac-aggcccaatccctggactgctcggggcTAAGCAAGCTGATCAGAGCGTACCCCCACAGAGCGTACTGCTCTGT-CTGGTTCTGCATCTAGTAGGTGCATAGAACAGAGAGGCCCAGCCTTCAGTGAGCACAGGGATTTCCTGGACTGTGC---Agatctagagagg-ctggagcacagtgtgagattcggggtttctacaaggttgct------gctgc a score=14494 s hg19.chr6_ssto_hap7 1563072 593 + 4928567 tgctgctggtcttcagatcccacttttggtagcaagAACACAGACCAGGATTCCTA---GGCTAtgcatcagcctcgcctgtgaggcttgttaa-taagcaattcctgcactccatgcgcaacattctga--cacaggggcatctgtggagaggcctgagtattCTACAACAAGC-------------CCACAGC--AAACCTGGTGCTCAGCCAGATTTGATATCACTGAGATCAGTAGCTGGAGAATGCCCAGGATGGGGAGGGGTCTCAGACCCACATTTAAGTGTTGCTTTATTCTGGGTTTtttatttatttatttatttatttTTAAGGAGGATGTGTTTCTT-TAATTATAAGACAGGATGCTGAGAGATAAATGTCATTTTCTCTATCATGGGGTATAGCCAGATGGAAG-ATTGAGAAGTGGCTCACAGCTCAGCAGAATGAAAAAATATCTGAATGCT-GCTTTCTGAAACTACTCTCCAGAATGATTTCACACTCACTCCTTGGAGCAAACAATGACTTGCAAATTTTTCT-AATTTAAACATAAAGGAGTG------TACATATTGGTATTAGTATTC------------ATTTTATTTTGGGGAAGGGCACTGTATTAGTCCA s canFam2.chr12 71501511 578 - 75515492 TGCTGCAGGTCTTCACATCATACTTTTAACAGCAGGAATGTACATTAAGATTCCCATGTGGCTgtgcatcagccttacctgtagggcttattaaacaggcaattccttgatcttgtgcctaatattctgagtctctgag---tctggggagaggcctgtgcattttgtgagaagctgcatgagtgatcctagtgcttgatccTAGTGCTCAGCGGGA------ACCACTGCGATCCGTGATCAGAGCAAGCCTGGG-TGGGGAGGG------------CATTCAAGTTTCTTTTAAATGTGGACTTTTTCCCC--------------TCATAGAGACAAGGCATTTGTTGTCAGTATGAGACATGCTGTTGTAAGATATGTGGCATTGTTT-TATCATGGGATATGGTCAGGTGGGAGGATTAGGGAGCGGTTCACAGTTCAGTATGAC--AAACATCTCTGAATGCTTGTTCTCTGCAACTATTCCTCTGATTGATTTC-----------TTGGAGCAAAGAATGGAATCCAACTTTTCTTGAACTTAGACAAAGGATAGGGGATACATACATACTTATCTATGTCTTCTATGTATATAAAATATTGTTTGGGGGAAA--------ATCATACCA a score=21264 s hg19.chr6_ssto_hap7 1564024 887 + 4928567 caggtttgaagctacacagccaggaacataatccacagc--caccctaattcagatctctcataggaaccactgtccctgctcctgagcacagatgctactgcatatacctctgataccctgatggcc---gacactgggccctgtggcaaagactgctatcactgctgctcctgagaactgctccactactgctcctcagccatctttaccaaaatgcagtatttactgtcccagcctctctgtgtcatctcatcctgattagaagcccacatgtggttatctaaattgtgcagccaaagcctcttgcagtgtttaactgcaataatgttggggaaagtgaatttttctcctttgtagaaggaggtagtccctgccttctaataagactcttcaacataggaagagaattcagttgctggAGGTAGA-----GGGGTGAGGGATGGAAAAAGAATGACAAATTTCAATTCCTAGAATCATGTTCTGAGACTAGAACTTTATCTAGTA--CATTGCAGGCACCTGGGTTTGGTTGA--------GTGTATAATAAATGACATAGTTCAACTTATTCCCTTGACAGTTTGTTTTGGGGTCCAGCTTTTGTCTACCCCAGTTTTCACACACAGATACGTGGAGAAGCATTGTGTGATGGTAAAATGTTTACTTGAAAGCCTTTTTCCCTATCTTTGTCT-CTTGCTAGGATTAAAA-ACCCGTATCTGTAAGACATCAGAGGATCCATGTATACACTGACattttatataaatttttaatattttGTTCTATCTGCACATGCTCCTAGGGAGAG-TTATCTATACATTCACCAGTTTTAATGTGACTGCTCACAGAAGCCTAAAAAACCA---------------------------------TCCTAATTTAGATGCCATTTTACTCAAACT----ATTGT--------------------------ATGAACA s canFam2.chr12 71502089 942 - 75515492 caggctt-aggctacacagccaggaacagaatccacaattgcacagtaaaccaggtctcacacaggaaccatggcttctgctgctgggcacagttgtcactgctcacaccactga--ctcagttaatccagaacactggcccccttggctgggactgccatagctgctgcttgtgggactggatgacacactgccatcctgccacctatgccca--tgccttctgcatagtggcagcttctctctgtccccaggtcgtgagtcagggccagcgtgttgtcacctgtttggtg------gagtctcatgctgtgtgtaactagaaggatgttgggaaaatAGGACTTC-CTCCTCTGTGGAGAGAGGCGGTCTCT----TCTAA--AGACCCT-------AAATTTGGAATTCTCCTCATGTAGGAAGGCAGTTGGGGTGAGGGATGGAGAGGGATGGAGAAAG--CCATTCTTGGAGCACAGATCTGAGGCTGAAACTTGATCTGGTGTGCTTTGTAGGCACT--GGTTTGACCGAAGGAACAAGTGTCTAATAAATGACACCTGTCTTCTAATTCCCTTGGTACTACATGATTAGATCCAGCTTTTGTCCACTCCAGTGTTCGCTCACAGATACATGCAATGGTGTTGTGGGCTGGTGGCATGATGACTTAGGATGTGTTTGCCCTGCCTTTGGCTCCTTGCAAAGAGGAGAACACCCAGGTCTGTACGACTTCAATGGGTCTGTGTGGGTACCAATGTGTCATGCTGACGTTT-ATATTTCCTTGTGCCTGGCGACATCCTGGGGGAGAGAATCTCTTAACATCTATCAGCTTTTATGTGACTGCTTGCC-AAGGATGAAAAACCAAACAGTGAAAGAACTCAGAGCACCAGCCTGGTTTTCTAGTGTAGCTATAGTGTCCCTCAAAGTCTGAACTGTTCATTCACAACAGTTTGGCTGAGAAAATGAAAA a score=2385 s hg19.chr6_ssto_hap7 1564911 137 + 4928567 GCTGATA--ACCATA-----CTGTTTTTAGAAGACCCAGTGACATGGTATAAATGCTCAT--CTTTTGCTTGACTGTTACTAGTCTGGGATGAGATAAAGTAGAGGTTTACTTGCATAgt-tcactcacaatttctatatgtatagt s canFam2.chr12 71503357 133 - 75515492 gCTAACAGGACCATGAGCATCTGGTT---GCAGACAGAAGGACATGATAGGAATGCTTCTGCCTTATCCTTTGCTCTT-----------GTAAGATGAGGTACAGGTTTACTTGCTTGCTCTTACTCTGAATTTCTCCTTGTGGAGT a score=5681 s hg19.chr6_ssto_hap7 1565048 176 + 4928567 attgtgggctgctaacaaacagtccacagaccagtgctagcccacagactgcactttgagagtagcattgGTCTAGATGTACTTGTATTCCAGCATCTACCTCGGTGTCAGATTAATGGCAGGAATTAATCAGTAGCGAATGGGGAttccatttccggtaatagggtgaactaggt s canFam2.chr12 3941505 166 + 75515492 tttataagctg---agtaacagtttacagaccagtactggctcaCAGGAGACAC----AAATCCCCACTGGTTGAGGTG-ACTTACACTCTGGCACCTACTTTCATGCCATATAAATAGCAGAAAGGAA--AATAGTTGATGGGGATTCCATTTCCAAtaacactgtggactgagt a score=5360 s hg19.chr6_ssto_hap7 1565224 152 + 4928567 tttaaagctgcctcttctaccaaaaacaactaaaaaagagatgaaatgtgaaaatcaccCAAAAGTATAGAAATATAAAAAAGGGAATAATCTTTTTGGTC-AAAATATAAATGTGGGCAGGATTTAGAAAAAGGGAAGTTGCTTTTATCTTG s canFam2.chr21 9368660 146 + 54024781 TTTTAAGTTGCCTCTTCCACTAAAAACAATTGATAA------GATATTAAAAAAAAATCTAAAAGTATAGTACAACAATCAAGAGAATAATCATTTAGTCCAAAAATATAAATGTGGACAATAATCA-AGAGAGATAATTTGGTTTTATCCTT a score=17759 s hg19.chr6_ssto_hap7 1565376 598 + 4928567 AGGGCGTTTGCCAAATCTGGAAAAATCTTAGCTTTGGTTTTC-------TCAGCTTCATATGGTATAGTGCAAAGGAGGTAATTCTCAGAACTTGTTTGTATAGGGAGTATAAGAGGAGACACTTTTGTGTACCCCATGAAATATGGGAAACAAAAGATGTGTTTCCTCAGAGTAAGA------AAAGAAAATCTGTTTCATCCCCCAGCACAAGAGTATTCTAAAGAAATTTGCCTTTGAGTCAGCAAA------------ACCTGTTTTtgagaatttacaaccaccagccagcactcctgcagatttgttgcccaa-actagctttaccgtt-----ttgggccaaaataacctcaaagcatgattttgattaataattgtcctggattagcgatgatccaaaaattggaagaaggaaacaaaaatctttataggaatgcatattt-aacccatatgtcaaagaatttgcccaaataattctacaaggaa--aaagctgctcagagcatgaactgtataaagtacaagtggagaaaagtcagtctgattgagaaccagtggaaacaatagat------aagaggctcataaagcttcaatatttgaattatgaaacaaa--ataacgtaactagtat s canFam2.chr12 3941821 612 + 75515492 agggtacttttcatatctag-aaaatcttagcttggcttctttggctcatgagcttcacagag----------aggaaataatgctcagagcttattcacgtgaggaacagggaaacaaacattcc------ctcctgaaaatctgggaaac-tcagattcatatcctcggaaaagaatggttcaaatcaaatctattctatattcaaatacaagaatattctaaggaaatttgcctttgagtcagcaaaaagtgagtaagcaactattttaaggagtttgcaagcacacaccaacccttctgt-gactcataatccaatattggc----ccattggccattggggcaaaataacttcatgtcactagattagtatgtaattgtcctgtattggtgatgacccaaaaattataagaaagaaacaaatttctccagagaaatctctctttgaaactgtgtgtcaaaaaaatgacacaaataattacacaaagaaataaagcaattcataacaaaa---gtgtaaagttcaaatgggaaaaagactg--tgattgagcaactttagaaagaatcagtagtaaaaaaaagctcaggaaacttcaatattggaatcataagacaaaatataacatgactagggt a score=177 s hg19.chr6_ssto_hap7 1565974 21 + 4928567 tacatttaaaatAATTATGAg s canFam2.chr21 9369402 20 + 54024781 CACa-ataaaaaatttatata a score=979 s hg19.chr6_ssto_hap7 1566277 97 + 4928567 aata-ataataataata-ataata---ataataataatgacaaGCTTGAAAATGCCTACAGAATGTATTAACCTAAAAATGACCTGTTTTTCAAAAGAACTA s canFam2.chr21 9369422 88 + 54024781 gatacataatataaatatatattatatatgataaaaggaaaaaaatttaaaat---taCA-AATGCCCT-GCAGAAAAATGA---------CAAAAGAACTA a score=11644 s hg19.chr6_ssto_hap7 1588429 999 + 4928567 TTTTGGTTCTTATTGTTAGTGTGTTGTTATTCCTGTGGAA---ATCATAATTGTGCAGCGTTTTGATATCTATGAATTCAAAAACTTA-AACAGAATATTAAGAACAA-ACTAATAATAAAG---TGACAAACTTTGGATACCTTT-TTAACATTGTTTCTAAATATTGTAAACATGAATCTTCTGGACCTCAGAGGGAACAAGGAAGCAATGATATTAATAATGAATCATAATCTGGAACA---CCTGATATTGTACACAAACTATAACAACTGGAAATGCCTTTGCAACTGCATAAGAGTTAGTTCAAAGAAAC-AATAATTTGCATTTCTAAAATTTAAAAAATCCCCAATAACTTTTGACAAAACTCACAGATGGCTTATTATTGCTAGCAATGTAAATATTGGATGCAAATCATGCTCAAAAGCTGTGTGAATAG---CCAAAAGTGCTAAG--------------------------------------CACATTCTGTCAGTGCTCATAATTCAAGGAAAACAT----------------------TAGCAAAATTCAAAGAAAAAAAC--TTGAAAAATATTAAGAACAGCTTTGTA--------CAATAAAGTATTTGAAAAAAGCAACAAACAGTGGAAAAATGCCATCAGATGTTAGTATACAGTTTACCCAAATGTGTAATTAAATAGAGCATTTTACATCATTAAGTAGAGGCTTTTAAACAATTATACATAGTGCATATCATTGCAGTATAGATTAATGGTTCTGCTGGTTGCAAACCATATTCTACATAAG---ACAACTTTTGGAAAATTTATTAATCCAAGCAATA-------AATCATTATCAGTGAAGTGTCAACCATTTCACAAAATGTATTTAAGTTTTA-----GTTCCTTAAATACTAAATGTAAGACTTACAGGAAAATGGGTT---TTTGTTGATCTGAGGAACTTATACC--AACCTTACTCA---TCAGTGCCC-------AAGAAAAATAGCTTTAATGTGAGACAGTTGTAT---------------------GATGGTACAGATAGTGCCAGTATATGCAACGAAGAAAGTTCAG-GTTTCACCAAAATTTTGCAAAATTTCGGGGT s canFam2.chr7 47511113 1026 + 83999179 TTTTGGTT----TTATTTTTGTGC-ATAATTTTTATGTAATCAGTCCTAAT-GTGCAGAGTT--GatatttataaatttaataatttataataaaatattaaataGAACATCAAGAATGGAGAGATGACAAAGTTTTAATACATTTCTTAACATTCCTTTTAAACAT---AAACGTGAATCTTCTGAATCTGCAGGAGAACAAAGAAGAAATGATATTAATAATGAACCGCAGCTTGGAACATCTCCTGATACTGTGCAACAATGAATACAA------------------------------------AATAAAACAAATAATTTGTATTTATGGAATGGAAAACAGCTTGATTA--TTTCAAGAAAAAATATGACTGCCTTATTATTTCTAGTGCCAT-ATTGTCAGGTGCGAATGGAGCTCAAAAGTTGTATCATTAAAATTGGGAAGTGCTAAACATTTACATATTTAACCATGTAGCAATCCTGTAGCAATCATGTTTTGTTAAAGTTCATGGCTCAAGGAAAATGTGGTGTTACTAATAAGATATGTAGAGTAGATTTCACATAAAGAAGCAGTTAAAACCTAAAAACTACAATTTTATCATCAGTGTTACTAAAACATTTAGAATGTACGATCAGAATTTTAACACTGCC------TGCT---------TTTAGTTAAAAAT-------AATTGAGCATTTTCAATCATGAAATA------CTTAGGTGGGCATAAAAA---TATATCAGTACAACATGCTGCAATGG-------------AAACTTAAGGTGAAATAAGAAAACAGCATTCTACTAAACTACAAAACAAGGCAGTAACATTTTAATCTGTATTCGTGAAACTCCATCTATTTCA-------TATCAGAGCTTTAATAGTATGCTTAAAATGTAAGATGCAAGACTT---TGATAGTAGTTTAAAGTTTTTTGTCAGAAGGAATAACATCTGAAATCTATTGAATTTCAGTGTTACTGTTAGAGAAAAAATGGTTTCAGTGAGAAATATTTACATTAAAACATTGGATTTTGTATGGAGGGTATATATAATA-------ATGCTAGGGGCATAGTCAGGAGTTTCAGCCAAACCAAGAAACATTTCTAGGT a score=13519 s hg19.chr6_ssto_hap7 1599656 349 + 4928567 AGATTCCTGGCACTTGAACTCTCTACAGGCCCAGGAGAGAACAGCTTTCTTGAGGTCCTAAGGATACCTGAGAATCATTCTCAG-------------------------------AGTTAATGGAATCTTCTATATTTTCTGTGGATTTTGATTATCTACTTTTTTTCTAACTTCTGTGAGATTAGAGAATTGAAAGCCTGTCATATCACTGGAACTCAGTTAAAATGTGGTGTCTTCTCCAATATTGTCCAACTAGAAGATGTGGGAATCCCAACTGATATAAGAACTAAGA--------------------------------------------AATATGACTA----CAAACTAAAGGGA-AAATAAGAGAAGAACTTAA---AGAATATTTGGGAGTTTTAGGGAGGTCATAACTGTAATGAGCTAA s canFam2.chr7 55176562 422 - 83999179 AGTTTCTTGGCACTTGAATTGTCCACAGGCCTAGAGCAGAGGAGCTTTCCTGGGGTCCTAAGGATTTCTGAGAATCATTCTCAGCATCCAGTAGAAAAGGACTCATAGTTCTTGCAGCAAAAGGCATCTTCTTTA-CCTCTGTGGATTTTTATTA-----ATTTTTTCTAACTTCTGAGAGATCAGAGAATTAAAAGTTTGTCATATCGCTGAA----AGTTGGTACATAATATTCTCTCTAATATTTTCCAACCATAAGATATGAGAATCCAATCCAATAGGCTAACAAAGAAACACCTGGAGACAATCAGATCCAGGGACATTTCTAATTATAATAATGTGACCAAGGTCAAACTAAGAGAATCAGTAAAACAAGAAATAAAAGGAGAATATTTAGAGGTTTGGGGGAGATCATAACAGTACCAAACTAG a score=12921 s hg19.chr6_ssto_hap7 1613641 274 + 4928567 AAGGTAGAAGTCTGTTTCTCTGACATGTGATGGCCTTGTTGTAGGTAGTCTTGGACTAAAATGCTGTCAGCAACATAGACTTCCTCAGTGTTCCTGCTCTGGAACTCCCAAGGcagtggttcccaaagtctgctgcacactggaatcactt---gatttttttaaacaatgatgtctggcttccaccctgagacattctcatttgattggtacacatggtgtgacctgggaaccgggatttttaa-----------aagttccccagctaattctaatgtgcagcaaa s canFam2.chr27 23226359 282 - 48908698 AAGCTAAAAGTCTATTTCTCTGACGTGTGATGGCCCTGTTGTATGTAGTCCTGGACTGGCATTCTTTCAGCAATATAGGCAACATCAATGTT----CTCTGATGTCTCTAAGGcagtggttcccaaactttgccacacactggaatcatttggagatttttgaaaacactcgtggccagctcccacccccagaaatttttatctgattgcactgca--gtgcagcctgggcattgggattttttaaaaagctcccgaagctccctaagtaattctaatgtCTATCaaa a score=17546 s hg19.chr6_ssto_hap7 1621898 423 + 4928567 gtttaattaCATCCCATTATTACAGTTCATTTTTGCATATTCCTGTGTTGAAAATCCTTTG----GTATAAATCAACATCAAAACTCGGTGTTATTCCACTTTTCTTGAACTGTAATCCTTTT------TAAACAAGGAATATACCTTTTCTTGTTTAGAGAATATACGTACATTCATAAATCTTGGC-----AACTTTCAAAGGCCATAACAAATTTGTGTTAAGAATTCAGATCCCCTTTATTATTG--TGGTAAACAGACAGATGAAATTAAGAGATTATAGC-TTGTTTTCAC--TCTCTCCCAATTACTATCGCTTGAAAAATACCGGATATTTCATTATTATCC--TGTCCggagtcggcaaactacggtctactatctgtcttcgtatacgtcaaaagctaagaatggtttttacatttttaaatgactggggaggga s canFam2.chr12 3314812 440 + 75515492 ATTTCATTTCATCTCATTACTGTAATTCATTTTTGCATACTCCTGTGGTGGAAATCCCTTGATCTATATAAATCAACATTATAACTCAACATTATTTCATGTCTCCTGAACTAAAATCCCTTTCAATTCTGAACAAGGAATATGA--TTCTTGGTTTAAATATCCTAC-TATACTCATAAATCTCAGCCTATGAAGTTTCACAAGTCATAACAAATGTGGGTTAAGATTTGAGATATCTTTTTTTACTATTTTGTGTATTACCATATAGACAGAAGAGATCATAGCATTGTGTTCACCTTCTTTCCCAACTAC--TCTCTTGAAAAATCCTGGGTACTTCATTATTGTTTTATGTCACAGGTTGGTAAACTATggtttgctacctgtgtttagatggcctgcaagctaagaatggtttttacatttttaaatgattggagattaa a score=1732 s hg19.chr6_ssto_hap7 1622333 89 + 4928567 aaggggagtatttaatgacacttgaaaatgttattaaattcaaattttagcatccata-ataaagtttcattgacacacagccatgctca s canFam2.chr12 3315454 75 + 75515492 aaaataagtattttatgaca-----------tatgagagtcaaattt--gtgcccatacagaaagttttatta--acaaagcaatgtctg a score=26326 s hg19.chr6_ssto_hap7 1622738 736 + 4928567 ttcatttagtactgtctaatgatgttttcatactgcaaggaga-aagctgagtatggaccacaaggccaaaaagatgtcctctctggctctctacagcaaagatttgccaagccctgTTATATGTCATACTACTTGCGCTTCATAATTTTATAGTTTTACCTAGACAGTCTCCCTTTTTTCCTTCCATATTCAGCATAAAATCCCCTTAAT-ATCAGTCTCTAGGCAAGCACATTCTTCACAGTCCTTAGAACTGGACCTCCTCTTGTTAATTTCCTTAGTCTAATCACATTCCTCCTGGTTATCTACAAACAGAAAGCCAGAAAGGAGGGCTATCAACATCTTAAGCGCCACAAATTAACAAATCAA------AACCAAATCTCTC------------TCTCCCTCCGAAGCCACGGCTAAGGAGGCTCACTG---------CCCAGTTAGTGGCTTTCAAACTACC----CTTACAAGTGAGACATCTTGTGAATTAGAACAAGTGCTGCTGCTAAAATCCCTAACGGCTACATAGCAATGTGAAAAAAGGTATCAAATGTAATTTTCTCAAATTTAATCTTCTTCAATTC-TTGGCACAAAAAAAGGAACAGTAAAGGTAGA-CAACTGTAATTAGCATGTGTGATCCCAAATCTTTATACCTTAGATACTGGATTATATTTTCAGCAAGTAAATAGTTTCTGGCTCCCAAGATGAGAGGTTAAATAATGCAGGGTGTTTGTAAACAGCAGCACAATTTACACCGGAA s canFam2.chr12 3315530 691 + 75515492 ttcctttggtattgtctaacactgttttcacattataaatacagaggaagggtatgggcctcaaagaggaaaacgcagcttatccggttctttacaggaaaggttcgccaacccctATTCTATGTCATATT----------------------GTTTTACCTAAACATTCCCCTATCTTTCCTTCCATATTCAACATAAAGTCTTGTTAATAATCAGTCTCCAGGTAAACACATTCTTCATAGACCTTTGAAATGCACTTCCTCCTGGGAA--------------------------TGGTCACCTACAAATCGAAAGCCAGAATGGAATGCTA--------------GTTACAAATGAACAAATCAAAACCAGAACCAAACCTCACCACCATTATTATCCTCCCTCCAAAG-CAAAGCTGAAGAGGCTGGCCACCCCCGGACCCCCGTTAGCGGCTTTCCAACTACCCTATCTTAGAATTGATGCATTTTGTAAACT-----AAATTTTACCCCTAAAATTCCTAAGAGTCAAATAACAATGAGAAAAAAGGT---AAATGTAATTTTCCCAAGTTTAATCGTCTTCAAATCATTGGCTACCAGAAAATAAGAGCAA--GCAGACCGATTTTATTTAGTATGCATGATTCTAAATCCCTGTACCCTGTACACTTG---ATATTTCCTACAAATAAACAATTTCTGGCTCTTAGGATAAAAGGTTAAATACTACACTG----TGTAAACGACATCACAACTTACACAGGAA a score=120770 s hg19.chr6_ssto_hap7 1623970 2308 + 4928567 aaggtgagcagcagagacgcggttccagctctcccccggctcccactccagcgggataggtagataATTTCGGTAAATTTCGCCAAGCAGGGGCAGGACAAAGAGTATTTGAAGTCTACCGCGGGGAGAACTTACCTAATCCTTGAATGTTAAAAGGCTAAAAACTCCACTAGTCGGAAGTGACGTGCCAGCTTAGCCCCGCAGGTCCGCCACGTAATTGGCCGCCGCCACAGCTAGCCACCCTCTCCCCAGACTGGCCCGAAGAGAGGAAAAGTGTGG----AAGTCCACAAGCCGCCCCCGCCCCGCCCTCTTCGTCGACTTTCAGCTGCACCGGGAGGCGGCGGCGCCTGGCCAGAGCCGGGGCCTGGAGCCTG---GACTAGACAGCCTCGCCGGCCGGGGCGCCAGTCCAGCGCCCTGCGGGCAATGGG-CTTCAGCGCTCGAGCACGCGCATGCGCGGGCCTGTATCTCCAGAGGATTCCTCGGGTCACCTGGACGCCAGCATCTCAGCCACCTGCCCCTCTGGGTCCCTTCTTGCCCTTGATTCCCCCTGCTGCTTCTCATCGCCAGCCCT---CCTCCTCCTTCTTCCGCAGGCACCGCTAGAcccggccgcggccgcccgccgACACCCCAGCTTCCACTGACACGAGCCTC--GGCGCGGCTTCCGCTTCCGGCGAGTATTGTGTGTCGCGCCGCGGGGCGGGGGCGAGGGGAGGAGGAAGGAGGGAGGCAGCGCTCCGGCGGCTCCGCGCCCCGCACTCCCGGACCCGAAGCCGGGAAGGTAGGTGCTGTCCCGCCGCCGCGCCCGAGCC-TGGGGCCTGCGCTCGCCGGCCGGCTCCGCAAGCCGCGTCCCAGCGCCCCGCGACTGCGTCACCGGCCCCCCGCACGTAACCACAGCTGCCTCCGCCCGCCTCGGGCCCGGGCGGACGTTTTGCCGCCCCGGCGACGTCAGCGCGTCCGGCGTTGCTTGGCTACCCCGCCGTTCCCCCGTCCCGCTGCTGCTCACCTCCCCGGGTGAAACTCTGACGCAGTCACCGCGGGTCTCGGCAGCGTCATAGCGGCGGGCATCCCATCTGCACGTCACACCTCTTTCTCACCTGGACACGCATCCCTTCCTACCCTGCCAGCCACGACGTTTCCTCTTTCCCCTCTCCAATGCCCCAGCCCCAGATCTGGCGGAAGAAGATGGAGAACGGGGGTGGGACAGAGTTGTGGACAACCTCTCAGGAGAGGGTCGCAAGGTGGGACCCTGAACAGTGGTAGAAACAAAATGAGATTGTCCCTGAAGTTTGCCCTTCAGCTGAGACACAAGGAGTAGAGGAAGAGGAAGGACTAACGCAGAGGCACTCAAGGTCTCACTATGACTGTAGTTGAGAGTCCTCTCCCTTCTTCCCTAACCCTTTCCCCATTTCTCT----CACCACTTCTTTGCCAGTCTAGATCCGTCCTGGTGCCTTACTGTGCATACAGTTCTACTCGTCTCAGGTGAGGAGGCCACTTAATTTGTAAAAGACTGAGGAAGGGGTAGGATCACCACAAGTCAAAGTTGGATTCCC-----ACAGATAGAAATCATCTGACTGAACTTCTCTCCTATTGCTGACAGAAGAAATTCAAATCCAAAGAAGTTATCAGTTCCTACTCCAAATCAAACACATTT---GTGTGTGCCAACAATATATACAGGAACAATTGTTGTTAACCTACCTCATTACATGGCCACTTATCTCTCAGCACATAGATCTA-CCAAATTTCCTTCCTTCCAGTAGGTCCCTGGAGAAGGATGGGGGTCGGGAGGAGAAAAGGTTATGGGGATAGTTAAATCAACTTACCCATGGCTAAAAGTATGGATGTTTTAAGGATGGAGTAGGGGGCCAGCCTTGTGTTTTATAAATCTCTCCTATGCATTTCCAATTCTTCTGAGGCTGCGCTTGAGGGAGATCTCATTGCCTCTTT-TGTGTCTCTTAATTCGCAACCACTCCAGGACCTATAAGTTGGAGACACACTATGCCCAGGGTGTTAGTTATCAATAGCTATATTGAAAGATTCCAGTCACTAC----------AAATAGACTCGTT-GCTCTCTTTTCAAGAAGTCGTTGGCCTGAGCTCAGCAATATTTAATATGGTTGCCATAATTTATCAGTTTTCAGCAGTTCTGAGTGTCCAGATGAACACAAGAGAAATGGAATGTTGCGTGAA--ATGTCATTCCAAGAAGAGAGCAGATTTCCTTTAGGCTAGTCTGATGGATAAAAGGAAGAATAATTTCAGATTTTCCTGAAAAGAGGAGGTTGCC---TTTGCCTCATTCATTCCATTTGTTAGCCTTTAGA s canFam2.chr12 3316272 2244 + 75515492 AAGGCGAGCGGCAGAATGGCAGGACTAG---------GTCTTGCACTCCAGCGGGGCAGGTAAACAATGTCTTTACAGCCCGCCTAGAAAGGGTAGGGCGAGGAGCTGCTGAAGCCCACGGCAGGGA-AACTTAGCTAATCCTGGAATGTTAAAAGGCTAAAA-CTCACCGAGTCGGAAGTGACGTGCCAGCTGAGCCCCGCAGGTCGGCCACGTAACTGGCCGCCGCCTCGG-TCGACACCTGCTTCT-GGACGGGGCTGAACAGAGGAGAAGTGTAGCTCAAAGTCCGCAAGCGGCCTGACCCTATCCCTCG----CGGCTCACGGACCCAC-GCGGGCCAGCAA-GCGTGGCCGCAGCCAGGCCCCGCAGCCCGAGGGGCCAGCCGGCTGCCCCCGC----GC-CCAG--CGGCGCCCTGCGGGCCATGGGGCTTCAGCGCCCAACCAGGCGCATGCGCGGCCCTCTTTCTCCAGAGGATTCCTGCGGTCACCGGGACGCCCACATTCCAGCCACCTGCCCCTCGGGGTCCCTTCTCGCTCTTGCCTCCTCCGGCCGCCTCTCACCTCTGGCCCCGCGCCTCCTCCTTCTCCCGCGAGGACCGCTCGACCTGCCCGCGGCGGCCGGCCGACACCCCGGCTCCCACTGACACGAGCCTCTCGGCGCGGCTTCCGCTTCCGGCGAGTATTGTGTGTcgcgccgcggggcgggggcggggggAGGAGGAAGGAGGGAGGCAGCGCTCCGGCGGCTCCGCGCCCCGCACTCCCGGACCTGAAGCCGGGAAGGTAGGTGCCGTcccgccgccgcgcccgggccctggggcctgcccccgccggccggcTCCGCACGCCGCGTCCCAGCGCCCCGCGACTGCGTCACCGGCCCCCCGCACGTAACCACAGCTGCCTCCGCCCGCCTCGGGCCCGGGCGGACGTTTTGCCGCCCCGGCGACGTCAGCGCGTCCGGCGTTGCTTGGCTACCCCGCCGTTCCCCCGTCCCGCTGCCGCTCGCCTCCCCGGGTGAACCTCTGACGCCGTCACCGCGGGCCCCGGCTGCGTCATAGCGGCGGGCATCCCACCTCCACGTCACACCTCCTCCTCACCTGGACACGCTGTCCTCCCT-CCCTGTCAACCGCGACGCTTCCTCT---CCCCCTCCACTCCCCCTACGCCACATCTGGCGAGAGAAGATGGAGA-CGAGGGTGGGACTGAGCTTTGGACGAC-GCTCAGGAGAGGGTCGCAAGGTGGGACCCCGGACAGTGGTAGAAACAAAACGAGGACGTCCCTGAAGTTTGCCCTTCTACTGAGATGCGAGGAATAGAGAGAACGAAATGACCAACCCAGAGGCGCCTGAGGCCTCACTGTGGCTGTGACTCCAAGTCCTCTCTGTGCTTCCCTGACCTTTTCCCCATTTCTCTTTCACACCACTTCTTTGCCAGTCTAGATCCACCCCGGTCCCTAACT-----------------CACCGCAGGTGAGGAGGCCACCTGATTTCTGGAAGC------AAGGGGCAGGTTCACTA---GTCCAAGTTGGATTCCTTTCGGAAAAGAAAAAGTCATCTGACTGAACTTCTCTCCTG--GTTGAGGGAAGAA-TTCAGGTCCAAATAAGTTATCAGCTACTACGCCAAATTAAA-ACACTTTCAATGTATGTCATTGATATATATA---ATAATCATTGTCA------CTCATTACATGTCCACTTCTCCCTTAGCACTTAGAGTTAACTATATTTCCTTTCTTCTCTTGGGTCACTTGGTATGCAAGGG-------------AAGGGATA-GGGGCTAGAGAAAGCAAATATTTCAGGGATAAAAGTGGTGA-ATTTCAAGGAAGGAGTGGGGGACCAGCCTTCTGCCTTATAAATCTCTTTGATGCATTTCCAAT-ATTTTGAGCCTTCACTTAAGGGAGA---CTTTGTCTCATTATGTTTCTCT-AATTCCCAACCACTCCAGGTCCTATTAATTGGAGGCACAGTACCTCCAAGGAATTAGTTATCAATAGCTGTTTCAAAAGACTCCATTTACTGCTGGATATTTAGAAAAGGCTTGTCAGCCCTCCTTTCAAGAAGT-ATCGACTAATACTC-----TCTTTAGTGTATTTGCACATATTTATCACTTCTCAGCAGTTCCAAATGTCCAAATGCACGCAA-AGAAATGGGGTGTTGAGTGAATCATTTCATTCCAAGAAG---GTGCACTTCCTCTAGACTAGTCTGAT----AAAAGGAAGAATA---TCAATTTTTTCTGAAAAGAAGAGCTTGTCACTCTTGCCTAACTTACTCCTTCTATTACCCTTTGAA a score=15259 s hg19.chr6_ssto_hap7 1626507 385 + 4928567 AGAATGAGAGAACAGTGTCAGAGAATCAAGCTTAGACTCCAGTGGATTA--ATCATAAAGCTCTT--ATAACATTAAACTTTAAAATATGGTTAATTTAAGAAATGTTAATATTTT------TATGACATTTTTTACTT-CTCAGATTCCTTTCTTGTCTGTTAGAA-ACGTATGTCAAACGAGG-ATACAGTGTCTGGAACTATTGGTTCTAAGATATAAGTGGAATGAGCCTGGATCAGGAGAAGTATGCTGAGCTAGAGTTGAAGGAAGCTTCTCTTTCTAACAAGAGAAAGCAGAGGTAAGAGACAAGATAGATCAATTGGGGGTTGTGTGTCAGTTTACTAACAAG--AAAAAAAAGGTTGATGGCTGGGAGTCACAAGTTTTGAAAATGGAGAA s canFam2.chr12 3318516 372 + 75515492 AAAGTGAGAGAACAGTGGCAGAGAA----GGTTATATTCCAAGGGGCTATTGTAATAAAGTTCTTCTGTAATACAAAACTTTAAAATAT-----ACTTAAGAAATCTTAATACTTTGGCTTTTATGGCACTTTTCACTTTCCCAACTTCCTTTCTCATCTATTAGAAGAAATATGTCAAACTAGGGATAC----TTTGGT----CTGTTTTTAAGATACATGTGGGGTAAGTCTGGATCAGGAGAGTTATGCTAGGCCAGAGTTGAAGGAAGCCTCT------AACAAGCAAAAGTAGAGGTAA-AGACAAAAGAGAT----TGGTGATTGGGTGTCAGTGTTCTGAGGAGGGAAAAAAAAAATAGATACCCAGGAGTCACGGGTTTTGAAAACAAAGAG a score=109764 s hg19.chr6_ssto_hap7 1626892 1842 + 4928567 ACAAAGAGGTTGAATTGATTGGAAGAGAAGATGGAGAATAACAAGAAGGGGCAAATCTGGAGTTAGGACTTAACATAGGGATAAATGTCGGGTCAGGGATGCAAAAAAAAAAAAAAGAAAAAACCTCCAATTAATATTTTTATTTTCTCTGTCCTCTTCCCCACTCCCAAGTTAAATTATGGCAGAGACAAGTCTGTTAGAGGCTGGGGCCTCTGCAGCCTCTACAGCTGCGGCTTTGGAGAACTTACAGGTGGAGGCGAGCTGCTCTGTGTGCCTGGAGTATCTGAAGGAACCTGTCATCATTGAGTGTGGGCACAACTTCTGCAAAGCTTGCATCACCCGCTGGTGGGAGGACCTAGAGAGGGACTTCCCTTGTCCTGTCTGTCGAAAGACATCCCGCTACCGCAGTCTCCGACCTAATCGGCAACTAGGCAGTATGGTGGAAATTGCCAAGCAGCTCCAGGCCGTCAAGCGGAAGATCCGGGATGAGAGCCTCTGCCCCCAACACCATGAGGCCCTCAGCCTTTTCTGTTATGAGGACCAGGAGGCTGTATGCTTGATATGTGCAATTTCCCACACCCACCGGGCCCACACCGTTGTGCCACTGGACGATGCTACACAGGAGTACAAGGTGGGGAAGCAGACACACGATGTCAGTGTGGGTAAAAAGGGAGAAGCGGCAGAGGATGAGATACTCCCTAGGTAGA-GATCGTAAGCTCCT---------ACTA--------CTCACTTTGTATTC---TCAGAGCTGCATATGCAG-GGGCACACAGTATGTGTGATCAGTTGTCCTCTAGCCTGAAAAAGAGCAATGGTGAGAAGTGCCCTAAAATTTCTCTCTGACTTTTGCAATACATGTGAGTCTTATGGGTGAATATTGGTATGTGTGGTCATA------TTTTTCATAAATGAATGAAACCACATGGAAAAGATTAAACTTAGGAAGAACTGAAAAGTAGTCTGGTTTCTTCATTCTGCCTGCCTGCTCAGAATGCTCCTTGTTTTCACACTGGTTATTGGGCATAGGTAATATCGCTTGAGACTGATACCTACCGGACTAAGCTGAACCATTCAATTGTTTGCAGCTTCTCTAGGTAATGGGTAACATGGCATATCATTTAACTTACTGCTGAGACAAAGGA-AAATGTTTGAATAAAGGGAAC-AGAGATATGAATGTGTTAGCATTTTATCATATACTTTGCTTAGTTATGTTACTCTTGAAAACAAGATTTCAGGTAACTTACAGTATAA-TAACCATGTTTTTA---TTGTAGGTGGACAGAGGTGGATGGGAGGACAGGTTTAAAGAGAGATATTAGGGTACAGAAGGTTGCTTGGATGGTAATAGGCAGTTGCCTCAGTAAGAAAATGGAAAGAGTTGAGAAAGGACACAGAGTTGATGACAGCTA------TCTCAGATTCAGTAAAAGGACAGTTGGGTGAGCAGAGAAGGTGATGTGGACAGGCTAGTGGCAGGAGGAGGGACTGTAGAAAGTTGACATCCCAAATGACAGGCAAGGAAGGAAGTCAGATCAAGAGGCAGTAAGATGGCTAGGAAGCAAATAAATGGTTTAAAACAAATGGTTTAATCTCTGAATGGTAGGTATACCAGTCAACCCCAAATGTCACCTCTCCCACTTCCTCCCTACCCCTCAGGAAAAACTGCAGAAGTGTCTGGAGCCCCTGGAACAGAAGCTGCAGGAGATCACTCGCTGCAAGTCCTCTGAGGAGAAGAAGCCTGGTGAGCTCAAGGTAAAGGCAGGCAATCCCATGTAGGCTGCTCTGAAGGGTATTTGCCTATGAGGGAATTAACTGTACACTATTTAATCCACCAGTTCCGGTTCATTAGAAAAATGC s canFam2.chr12 3319028 1835 + 75515492 AGAGGGAGGTTGAATCTAGCGGAAAAGAAGATGTAAAATACCAAGATAGGGCCAA-CTGGAGTTAGGATTTATCATGGGAGTAAATGTCAGGCCAGGGATACAAAAA---------TATTAAACCCCCAACTAATATTTTT-CTCTCTCTGCCCCCTTTC--ATCCCTAAGTTAAATAATGGCAGAGACAAGTCTGTTAGAGGCTGGGGCCTCTGCAGCCTCCACAGCTGCAGCTCTGGAGAACTTACAGGTGGAAGCGAGTTGCTCTGTGTGCCTGGAGTATCTGAAGGAGCCTGTCATCATTGAGTGTGGGCACAACTTCTGCAAAGCTTGTATCACTCGCTGGTGGGAGGACCTAGAGAGGGACTTTCCTTGTCCTGTCTGTCGAAAAACATCCCGCTACCGCAGTCTTCGGCCTAATCGACAACTAGGCAGTATGGTGGAAATTGCCAAGCAGCTCCAGGCTGTCAAGCGGAAGATCCGAGATGAGAGCCTCTGCCCCCAGCACCATGAGGCCCTCAGCCTCTTTTGCTATGAGGATCAGGAGGCTGTATGTTTGATATGTGCAATTTCCCACACCCACCGGGCCCACACCGTCGTGCCACTGGATGATGCCACACAGGAGTACAAGGTGGGGAACCAGACACATGATGCCAATGTGGGACAAGAGGGAGGAGC-GCAGAGGATGGGAGACTCCCTGGGTAGAGGATCCTAAGCTCCTGAGGGCAAGACTGCATCTGGCCTTACTCTCTAGTCCCTTCAAAGCTACATACACAGAGGGCACACTGTGCATCTGATCAGCTATCCTCAAGCATGAAGAAGAGCAGTTTTGAGGAGTGCCTCAAAATTGCCTTCTGACTTTT-CATAACATTTGAGTCTTATGGGT--------GTATGCATGGTCTTACGTCATTTTTCTTTAAATGAATGAAACCATTTGGAGATGATCAAACTTAGGAAGAATTG-AAAGTGGTCTGGTTTCTTCATTCTGTCCTCCTGCTCAGAATGTTCCTTATTTTCCCATTGG-TATTGGAAATACATAACATCAGTTTAGACTGATCCTCACCAGACTAAGCTGAATTCATCTGTCATTTACATCTTC-CTAGATAATGGA-AATGTGGCATCTGATTTAA-TTACTGTTGGGACACAGGGTATATATTTGAGTAATAGGAACTAAAGATTTTAA--AACTAGGCACTGAACAAGTATTTTGTTTAATTATGTTAATATTGGAAACAAGATTTAAGGTGATTTACAGTGTAAGTAATAAAGACTTTATATTTGCTGGTGCTTTGAGTTGGATGGGAGGACAAGTATAAAG---GATATCAGAGTTCAAAAAGTCACTTTGACCATAATAGGCAGTCACTTGAGTAAGAAAGT-GATAGGATTGGGGAAGGACATGGAGTTGGTGACAGCTGGACAACTGTGAGATCCAGTGAGAGGGAAGTTTGGTGGGTAAGGAGGATGATGGGGACAGGCTGGTGGCAGGAGGAGAGA--GCAG-AAGTTGACATCCCAAATGACAGGCAAAGAAGGGAGTAGAACCAAGAGGTGGAGAGATGGATAGGAAGCAAATAAATGGTTTAGGATAAATGGGTTAACCTCTGAATGTAGGGTGTTCCAGCCAACCCCAAATGCCACCTCTTCCACTTCCC-----ACCCTCAGGAAAAACTGCAGAAGTGCCTGGAGCCCCTGGAGCAGAAGCTGCAGGAGATTACCCGCTGCAAGTCCTCTGAGGAGAAGAAGCCCGGAGAGCTCAAGGTAAAGGCACAAGATTCCATTTGGGCTGCTCTGCA-GGCGGTTAACTAC----ACATTAACCACACATTATTTAATCTACCAGTCCTGATTCATTAGAAAAATGC a score=91437 s hg19.chr6_ssto_hap7 1629064 2027 + 4928567 AGTTCTCTCAAAAATGATGGCATTTTATTAGGCTTGATTGTCATTAAACATTGTACTTAAATTACTTGTCATGAATTAAGTATT---AAGAGGGATTTAAGAGAT----GAAGAACAGACAGAATATCTTACATCTGGTGAGCTGAGAGAGTTCGTGCCTCTTGGTCTCCTTTTTTTGTTAAAGCAGCAAAGGAGGCTTTCTGCTGAGAAGGCAGGGATGGGAGTTTCTTAGAGGACTTGAAGAGAGGAGAATATGGAAGATTCACTGGGGAGAAAGGGAAAAGGAGCTGACCAAGAG-TCTCAGAAGAACTATCTAATGACATTAGGACCACATTCTTAAAACTCAAGTAAGCTTACATATGctag--aatgt----------------tctccccctccccatcctcca-ccataggatcttattcatctctcaggcgggatgaaagccacttcctatgcagcctttcctgacccttcagaaattaacattcttaattttcatacaattttgcacctcttttatagcattgccttatttgtagcatggtattttggtgtctgtctgtcttccattgaacagtgaacAATTATCATTTGTAGCAAAAATAACTAGA-----ATTGAGTCCTATGCATTAATTCATTAGGTATCCGTAACATTCCAGATTTATAGGGTT--------------------------GTTAGGG-TCTTAGAGTTCAGGCCAAATTGGGATAAGTGAGACATAGAAAAGCTACGAGAAAGAGACAGAAGGAAATCCTG-AGGCCATCTTTAGTAAGATGTAGGGGTAAACCTAGATattctttaaggtaggtattattaccttcagcttacacagaaggaaatggaccttgggtaagtgactagtccaagatcataaagccagtaagtggcaaaaccaggaatactagttcttcgtgaatcagtaaatatttgttaagctcctggtttaggccaaacccggtatttgacactggggaacaatgatgagcaaaaacacagttcctgccctccttgagcttaaagttaagtggagaaaataagta-----atggcacaaaatgcacagctgcaagttcataagaagACAACATAGAAATTTGGCCTCATTAAAGGTTTCCCGAAGAAGTAATGAGTTTTTAAGAGTTGACATGTAGAGATCACCAGAAGCTAAATCCAAGTTTT-GATTCATAGAAACATGAATTTTTAAATGAATGATAACATTTCATCAGAAAGCAAGTATTAT----------------TACCTTAGTGCCTTATACATTTTAGCAAAGTAAGCATTTGAA-ATTTTAAAATTTGAACCAATTTTGGTTAGAAATGTGAACTTT----TAAAGTTTTTTGTTCTTTTAGAGGCCTTCCAAGAAACCTAAAA-ATATGAAAATGGTGCTTATTGCTAGTCATTAACTTTCTTCTTCATGTTGATCACCTTCTTGAAGGTAAAGGATGGAGAGAGAAAT-ATACCTTTTTAAAACCTTCTAAATGCTTGAACAGAACTGTCCTGTTTTTTAAACTGTAAATTGTCATTTCAGTGGTCTCCAAAACTACCACCAACATTCCTCTTGTGACCATTTGAATTCTCCCTCCt---tctccctc---------------atcagactcaatgccccttt-----aaaaaataatttgtaatt----atgctgaactgaaaattacaggtaatataacctatgtgcataatgttaaattttaaagagtctatcatgtccaaat--------ataatataatgaaacataattgatgataaaatgtggtatgt-aatatttgggcatgactaccctgaacgactttacagtgtagctggttatatgcttgcccctatatgtgtcattatcagcaacgccataaatacaaattcagactgagatggatgtgtgccaatatgattgaaataccataagtagcttagctcttggtgatatgatttttcatagt----aataacttttggtaaagttctaagtataacaatat--aatcttgggttttattcagctattgctg-----aaaaattcacgtatagtaaaaccatgtaagaattactctgtgtttatactatataaaatggcattcaagcccaggccta s canFam2.chr12 3320863 2054 + 75515492 TGTTCTCTCAAAAACAATGGCTTCT------------TTGTCACTATATGTTGCACTTAAATTATTTGTCATGAATTAAGTATTGAAGAGAAGGATATTAGAGATGAAGGAAGGATAGACAGGACATCTTACATGTGGAGATTTGAGGGAGTTCATGCCCGTTGGTCTCCTTTTTTCTT-------GTAAAGAAGG---------GAGAGAGTAGGAATAGGAG-TCCTTAGAGGGATTGAGGAGAGGAGAAT-TGGAAGGTCCACTGGGGAGAAAGAAAGAAGAAGCTGGCAAAGAGCTCCCAGAGAGA---------GACTTTAGGCCCACATTCT-----CTTAAGTTAGCCCAGGAATGCTAGATAATGTTAGTCCATTTCTAGACTCTTCCTCTCTGCATCCTACATCTATAAGATCCTATCTATCCTTCAGGCAGGATGAAAGCCACTTCCTATGCAGCCTTCCTTGAAGCTTTAGAAATTAACTTTCTTAATTTGCATATAATTTTGGTTCTCTTTCATAGCATTACCATATTTGTAGCATGATAGTTTGGTATCTGACTTATTT--ATAGGACAGTAAACAGT--TCTTTAGTGGCAGTAATAACTAAATATTTATTGAGTCCCAGGTATTAATTCATTGGGTG-CCATGACATTCCAAACTTACAGGGTTATATTAGGTTTTAAGGTTCTGCCCAGGTTAGAGTTCTAAGAGTTCAGGACAA---TGAACATGTGAGACCTAGAGGAGCTATAAGACAAAG--GAAAGGGAGTCCTGAAGGTCTTCTTTAGCGA-------GGGTGAACTTAGATGccttgtaaagtaggtattattacccccagttatctcaagaggaaacaaaacctgaataagtatctagtccaagatcacacagccaatatgtggcaaaatcagggatactagctctgcatttatcaataaatatatattaaactt----------ccaaattctgtatttgacactggggaacaatgatgaacaaaaacacggtccctgtcctgcttggcttacaaatgaagtggagaaaatagaTAATGACATGGCACAAAAAGCACAGTTGCAAATTCATAAGAAGACAA-ATAGAAATTGGACCTCATTAAAAGCATCCAGAAGAAACAATGAGTTCTT-GGAGTTGAGATTTAGGGATCACCAGAAATTAAACACAAGTTCGAAAATAATAGAAACACTAATTTTTTTAACAATGACAACATTTTGACAGAAAGCAAGTATTATTAAGTATTACTAAGTATACCTTAGTACTTTATATATTTGAATAAAGCAAGCATTTGAATTTTTTAAATTTTTAACTAATTTTGATTGCAAAGGTGAACTTTAAAAAAAAGTTCTTTGTTCTTTTGGAGGGCTCCTGAGAAACTTAAAATATGTGAAAACGAAGCTTATTCCCAGTC-TTAACTTTCCTGTTCCTGTTGATCACCTTCTTAAAGGTAAAGGATAAAGAGGGGAATAAAAATTTTTTAAAACCTTCTAAATGCTTGAGCAGAACTGTGATGATTTAAAAA--------------TTCAGAGGTCTCTAAAACTACCACCAACATTCCTTTTGTGACCATTTGAATTCTCCTTCCTACCTCTCCctcaaccctacttccagaatcagacccagtgcccccttttaaaaataaataattagtaattaaccacactgaagtgaaaact--aggcaaaatagcttatctgcgtaattttaa-----aaacagactgcgccacccaaatacacccacacaacataaaggaaagtgattta-gataaaatctgttatataaatatttgggcacgaataccctgaaagac-ccgcagtgt-----gttttatctttgtatgtatacatgatgtcataaacaatgcaacaaacacagattcagactgaaataattgcatagtaatgttgac-aagcaccacaagcaacttagctcttgatgacataatttttcaaaattataagtaacttttggtaaagttctaagaaaaacaaaatgcagtctt-agttttattcagccgtttctgaaaaaaaaaattcaggtgtattaaaattgggtaaggattactc--tgttta---tgtataaaatgACATTCAAATCCAGGTCTA a score=13358 s hg19.chr6_ssto_hap7 1631426 360 + 4928567 tgtttttgaatatccagcagaacattagaaaatgttgcaggtcagttcactatgccgga-ttgtctcacacattggaggagtgcttgcgtcattgtcaggaacttccccaaccatggaaaac-aagaagatgtgcctatttccaaaatatcctcagagtgtgttaacagcttcatcaagaaccactgCCCTAAA-ATATAGAGTGAAAAAAAGAGAAAAGATTACCGGTTTATAAGAGGAAGGGCCTTTTTGCTTCCTATTTATCACAGTCATGAATGTTAAACTTacacccatacctaaacaaacacacatgcatgcacacacatgtgcaaacacacacacac----aAAGGCTGTGTTTTA-TTGA s canFam2.chr12 3322917 355 + 75515492 TGTTTTTAAATATACAGCAGAACA-TAGAAAATGGTGCAGGACAGTGCATTGTCACAGAGTCATCTCACATATT---GTAGTGCTACCAGCCTTACCA-GAGTACCTCCAGTTAAGGCAAACAAAaaaaacgcccttgttttcaaattatccctagtgggaagtaacacccccattaagaaccattgCCCTACATAGATAGAGTGAAAAAAAGAAAAGGGATTATGGGATTATATGAAAGATAGCCCTTTTGCTTCCTATTTACCACAGTTATGAATCCTGAA-TTCTACCCATACAT-------CACCTGTCAATGTACACTAACACACAGAGACACACACACAGGAAAAAACTGTATTTTACTTGA a score=25813 s hg19.chr6_ssto_hap7 1631786 554 + 4928567 GGGCAAA---TGTGAGAATATATTTTGTTCAGATGTACA-CTGAGAAGGCAGTGGTGGAAAGTGAAGCAGCAAGTGGCCCTAAACTAGAAGAGCTAGTCAGCCTCTGCCAGGAACTAGCTTG-AATCCACAAATGCCACGCTTGTCAGGCCCATCCTGGCTTTGCATCCCCACTCTCTCTCCACCCTCAAG----CCTGCCTTTCATTCCCTATCCACTTC-CTTCTAGAGTCCCAGTCTCTGCTTCTCACTTTGCTTCAT------------------CATCAGTCACATGATGCTTGGGGAATTC-TTTAGGGAGATCACTATTTGTTGTAGTGGAGATGCAGAAGAGAGGATG----TGCTGATAATTCTCAGAAAGTGTTATGGCTGGTGTTTGAGTCCTATATTATCAAATTTCAGGAATGTTAGAGGCTTAAGTCTGTGTGCTGGCTTAAAGAAAGCATGTTTCAAATTTCAAGAAACTAAATTACTAAC---AAACTTCTGTAACCTGTTCCTGGGGTAGGAATTGCCAGTTCTCTGAAGTGACTTGAAACAATTTAACAAGTTCAGCCCTGAAATCTACATA s canFam2.chr12 3323709 553 + 75515492 GGGTAAAAGTTGTAAGAATATATTTTGTTCCAGTGTGCACCTGAAAAGGCAACCATGGAATGAGAAGCAGC-AGCAGCTCTAGAACTG--GAGCTAGCCAGCATCTGCTGAGAACTAGCTTGAAATACAGAAATACCAGGCTTGTAAGGCCCATGCTGGCTTTGCAGCCC--TTCTCTATTCACCCTCACTATTCACTGCCTTTCAGTCCCTCCCTACTTTACTTCCAGAGTCCCAGTCTCTGCTTCTCTTTTCCTTTCCTCTTGGGTTTACTTTTCCCCATCAATCACGTGACACTTGGAGACTCCATCTGGACAGATCAC---TTATTGCAGTGGAGGTACAGAAGGAAGGACATACTTGCTGATAACCCTCAGAAAGTATTATGGCTGGTGTTTCAGTCCTATATTATCAAATTTCAGGAATGTTAGAGGTTTAATTCTGTGTAGTAGCTGAGAGAAAACATGTTTCAAATTTC---------AACTACTAATCAGAAACTTCT-------------------GGAACTGTCAGTTCTCTGAAGTAA-TTAAAACTATTTAACAGATTCTTTCCTGAAATCTATATA a score=6287 s hg19.chr6_ssto_hap7 1632340 130 + 4928567 TGTATATTTTATAATAACCCATAT---AACTCTTACTGATTCTTACACTTTCC---CAGTTCTCTGGTTTTTATCTGGTGCATGTGTTGCAATATGCAAAGGATGACAATCTTATTTTTAACTTTTTATTATTTGT s canFam2.chr12 3325285 136 + 75515492 TATATATTTTATAACAACCCATTACTAAAATCTTACTGATTCTGATATTTTCCAGTTGGTTCTCTGGTTTTTAGTGGGTAGATGTCTGGCAATAAACAAATGATGACCATCTTGTCTCTAACCTTCTAGTACTCAT a score=11371 s hg19.chr6_ssto_hap7 1632779 250 + 4928567 TACTTTCCTTTTCTCGACAGATTGAATTAACTAGAACTTTACAGTTGATAATAACACAGATATCTCTGATATCTGTAATAGTTAATGTCATCATATTATTGAGTTCTT-TATCTTAAATT---------------------AAAACA---------AATATATATATCCGCAGTGGTCTTCACTACCAAGTCATCAGTAGGGG-GGTGATAGTGATGGAGCCATTCTTTACAGAAGGAAATTCCAATGGAATAAAAAATGAGTGTTCTGTTAAACCATTTTC s canFam2.chr12 3325421 280 + 75515492 TACTTTCCTTTCCTTGATAAACTGCATTAGCCAGAACTTCAGAGTTGGGAATAGCA--GATATATCTTGTATCTGAAATAGTAAATGTCATTATATTACCGAGTTCTTATATCTTGCATTTTTTTTTCACTAACTTATAGAAGGACAGGCTTTTTAAAAGTTAATCTCTCTAATGGTCTTCATTCCCGAGCAATCAGTAGGGGTAACAACGGGGATGGAGCCATTATTTACAGAAGGAAATTTCAATGGAGAAAAACATGAATGTCCTATGAAACTATTTCC a score=47840 s hg19.chr6_ssto_hap7 1633394 726 + 4928567 AATGAAACTGGAAGTCTGTGTTAATTCATACATATGGTGGGTGAGAGAAAGGCTTCCTTATACCACACTGACCCTGCTGA-TACAACATCTTCCCTCTCTTCTCAGAGACTAGTGGAAAGTCGCCGACAGCAGATCTTGAGGGAGTTTGAAGAGCTTCATAGGCGGCTGGATGAAGAGCAGCAGGTGTTGCTTTCACGACTGGAAGAAGAGGAACAGGACATTCTGCAGCGACTCCGAGAAAATGCTGCTCACCTTGGGGACAAGCGCCGGGACCTGGCCCACTTGGCTGCCGAGGTGGAGGGCAAGTGCTTACAGTCAGGCTTCGAGATGCTTAAGGTTCGACCTTTGCCCCTGCATAGCCCCTCAGGCTGAGTGCAGCGTAGCTTTGCGTAGCCTGGGATTTGTCAGCCTGGGATACTCATTCTTCTGCTCTCCTTCTCTAAATCCAGTTCTTTCTGCCAGGTGTACTCAAAGGGTCTTTG-CTACGGAAAAG------TGATTTCTCCCATCCCCTTCTAACCATTTTTGTGTTCTTATCTCTGGTCAGCAATTATGTGCTTAATCTGTTCCAAAGAAAAGATTCATTCTTTTGAAAggagggaagtctagcctgagttagtgaaaaa---ctatgcattaaaaattttgtaaatgcagttaccattacttttaagtCCTGAAATTTGATTTATGTACTGCTGAAAAAGGA-----CAGAAACATAGTTTAAAGGATAc s canFam2.chr12 3325701 724 + 75515492 AATGACACTGGAAGTCTGTGTTAATTCATACACATGGTGGGTAGGTAAGGG-----------CCCCACTGGCCCTGCTAAATATAACACTTTTCCTCTTTTCTCAGAGACTAGTGGAGTGTCGCCGACAACAGATCTTAAAGGAATTTGAAGAGCTTCATAGGCGGCTGGATGAAGAGCAACAGATGTTGCTTTCACGACTGGAGGAGGAGGAACAAGACATCCTACAACGCCTCCGAGAAAATGCTGCTCATCTTGGAGACAAGCGCCGGGACCTGGCCCACTTGGCTGCTGAGGTGGAGGGCAAGTGCTTACAGTCGGGCTTCGAGATGCTTAAGGTTCGACCTTTGTCCCTGCATAGCTCCTCAGGTCAAGTGCAGTATAGGtttgcacaggccat--tctgtcaacctgggatgctcactcttctgctctgcttctctaa-tccagttcttccttccagacatactcaaaggatctttttctatagaaaggcttctctgatttctcCCATCCCCTTCTAATCATTT--GTGTTCTTATGTCTTGTGAACAATTATGTACTTAATTTGTACCAAAGAAAAAAAT--TCCCTTTGGAAGGAGGGAAATCGAGTCTGAATTAGTGAAAAAAAACTATACGTTAAAAATTATGTAAATGTAGTTGCCATTACTTTTAGGTCCTGGAACTTGACTTACGTAGTACTAAAAAAAAAAAAAATAGAAACCTAGTTTGAAGGACAC a score=24252 s hg19.chr6_ssto_hap7 1636559 339 + 4928567 TGTTTAAATAATATATTGCTTTTGATATGTATATATTAATAATACCTCTAAAGTGTTTGAAATATTTTGTTCTCTTACGTAAATGAATGGTGTTAGCAAAACT--AGGGAACATATTTTTTATCTTAGAGATTAGATTACCAGCATTTGAAGCAGTGAGGCTTCATTGTACATTTATTTTTATGTTACGTATTGCTTGGTATTTGTTCCTATGGCCTTTCATGTATGTGTGTTCTGCCTTCCATATTAAACTGGGAAATCCTTGTGGGACAGAGATTTGTCTTCTTTGTCTTCTGGACCCCAAGTATTCACAAATCAGTATTAGCACACAGTTATTAATGT s canFam2.chr12 3326434 334 + 75515492 TGTATAAATAATATATTACTTT-GATATGTA------AATAATGCCTCTAAAATGTTTGAAGTAATTTGTTCTTTTATGCCGATGAATGGTGTTAGCAAGGCTGTAGGAAATATGTCTCTTATTTTAGGGATTAGATTACTAGCATTTGAATCAGTGAGGCTTCATTGTACATTTATCTGCATGTTATGTATTGCTTGGTATTTATTCTTGTGTCCCTTCATGTATGTGTGTTCTGCCTTCCATATTAAACTGGGAAATCCTTGGGGGGCAGAGATTTGTCTTCTTTGTCTTCTGAACCCCAAGTATTCACAAATCAAGATTGGCACACGGTTATTAATGT a score=79462 s hg19.chr6_ssto_hap7 1637215 1466 + 4928567 TTATTAACTAATGCAAGACAGGGGATACCAAACCGTAACAGGAATGTGTGATTTGTTCCTATGCCACCAGTCTGGAACTCTCTGTACTTATCCTCAAGGAGAGTGAGAtatgtggttggtacttgggggacagagtaaagaattgatacaatccctgtcccttatagggagctcccagcatccttgaggagcaaagacaagcataaaagaaatcattgggaagtgata-taaATGACCAAGCTTCATGATGACCAGAAGTTGAAAGTAGGGATTAGGTTGGGAGAAGTGCATTCAGGTCCCGCTGGAGCTCTTC---TTGCACTGTGTGACCCTCAGTTTATCCTATCCCTATTTTATAGC-------TGTGGAACTTTGGGGAGGAGGGGGAACCTTTTGCCTTCAGGACCACTGAATACCAGGACCAATATTGCTTTCTTTTCTCCTTCCTTCTAGGATGTCAAAAGTACCCTGGAAAAGTAAGTGATTGTTGTATCTCTCTGAGTGAGTTAGGTCTTGGCTTAGAGAGGAGGGGTACAGTCAGGAGTTTGGGTTGGGGGTGAGGTTGGGAAAGTCATGTAGTGTGTCTGGGCAGGGTATGGGAGAATGTTCATTGTGCCCATGAAGCCAGTTAGAGAACAAATTATTGGGAATAATAA----TCCCTTTTCCCCTTTGAACATCAGGACTT-CTTGAGAAGGAGA----ATGATAAGGTAGAATCAGATTCTACTTGTGCCAGTGGGTGGAATTGTGTCCAAACAAGATGGCAGGAGGAAGGGGTTGGGAGAGCAGGGAGGGCAATCATCCATTTGCATGAAATACAGGAATATTCCTAGAAAGTTCGGAGGCTCACTCTCAAC-----GATCTGTCCACGGGATCATAAGGCTCTCCTTGGATTAGTAAAAGAAATCAACAGGTGAGC-----TTTTCAGGGAGGAGGAAGAAAGTGGGAAGATGGAGAATTTTAATTTCTCCCTAAAAATGTTAACATCTGAATAGTCACTTGGCTGGAGCTTCTCCCTAACCCTGCCCTTTCTTCCCCTATCTCCCTATCCCTCCTAGATGTGAAAAGGTGAAGACCATGGAGGTGACTTCAGTATCCATAGAGCTGGAAAAGAACTTCAGCAATTTTCCCCGACAGTACTTTGCCCTAAGGAAAATCCTTAAACAGCTAATTGGTGAGTTGTTCCCAAAAGGAAACTAGAAGAAACCACTAG-AGAGAAGAAAGTTTTTAGGTCCTACCTTATATGGGTTTCAGTTATCCTATGTCTCACTTTTCTTACTCCCACACACACCTACCCCTTTATCTGGCTTTTAGTCTCACCCTGAGTCACAGAACTTGGAGTGAGAGGAAGCCTTAAGCGTTATCTACTCTTAGGTCCATTCTTTTCTAAATAGAGACCCAGAAAGGTTAAATAATTTGCCAAAGTCATCGGGtagagtggttatataatttaccatgtaaacttgcataaccttcaaag s canFam2.chr12 3326768 1392 + 75515492 TTATTAACCAGTACCAGAC-GGGGATAACAAACAGCAACAGGAAAGTG--ATTCATTCCTATGGCACCAGTCTG----------TACTGATCCTCAAGG-GAGAcaggtgtgtggttggtacttgggggacagagtaaagagcggacacaatccctgtcccttgcattgagctcccagtGTCCTTGAGGAGCAA-GACAAAGACACAAGAAACCATTTGGAAGTGATGGCAAATTACCAAGCTTCATGCTAAACAAAAGTTGAAAATGGGGATCAGGTTGGCAGGGATGTACTCAGATCCCTCTGGAGCTCTTCCATTTGCATTGTG--ACCCACAGCTTGCCCTATTTCTATTTGATAGAAATAAAATCTAGAACTTTGGGGAGGAAGGGGAACCTTTTGCCTTTAGGACCCTTGACTACCAGGACCAATATTGCTTTCTTTTCTCCTTCCCTCTAGGATGTCAAAAGTACCCTGGAAAAGTAAGTGATTCTTGCATCTCTTTGAGTGAGTTAGGTGTTGGCTTAGAGACCAGGAGTACAGTAAAGAG---------GGGAGACAGACAAGAAAGCCAGGCAGCGT--CTGGGTAGGATGTGGGAGAATGTTCATTGCATCCATGAAGCCAGTTAGAGAGCAAATCACTGGGAGTAATAGATGTTACCTTTTCCCCTTGAAGCATCAGGACTAACCTGGTAAGGAAGTACCAAGATAATGTAGAACCAGATTCTCCCTATGCCTGTGGATGGAAATGTATCCAAACAATACAG-ACAAAGGAGGGGTTGGGAGAATGAGGAGAGTGATTACCCACTTGCATGAAATACAGCCATTCCCCCAGAAAGTTCTGAGATTCATTCTTAAAATAAGGCTGTGTCCAGGGGGCCATGTGGCTCTCCATAGATTGGCAAAAGAAAGCAGTAAGTGAGTACTTGTCTTCAGAGAGGAGGGAGAAAGTGGGAGGATGGAGAATTTTAGTTTCTCCCTAAAAATGGCAATATCTGCATACTCACTCCTCTGGAGCTTC-CCTTGACCCTGCCCTTTCTTCCCCTATCTCCCTATCCCTCCTAGATGTGAGAAGGTGAAGACCATGGAGGTGACTTCAGTGTCCATAGAGCTGGAAAAGAACTTCAGCAATTTCCCCCGACAGTACTTTGCCCTAAGGAAAATCCTTAAACAGCTAATTGGTGAGTTGTTCCCAAAAGTAAACTAGTAGGGGGAATCAGCAGAGAAGAAAGTCTTTAGGTCCCACTTTATCTGGGCTTCACTTACCTCATCTGTCACTTTTTGTGCCCATAGCCACATCCATCTCTTTTCTTGGCTTTCAGTCTCACT--------------------------------------GTCATCTACTCTTAGGCCCACACTTTTCTAAATAGGCACCCAGAGAGGTTAAATAATATGCC-------------------------------------TGAACATGTTTCCCCCttgaga a score=175411 s hg19.chr6_ssto_hap7 1638985 2622 + 4928567 ctgaaagggagtgtcatta-tattaatgtgaatatgcagggaaaatagtcataaaccaggccagttcctggaaaacacacatggtcaccctaTCCCTAGACCATA-TGCTGTCTTGCTCGGCATCCTTCTTAACACTTTCCGTTTTTTTCTGCCCCTCAGACTACACCTTGTACTTCTCTACATAGTGAGATAAATGATAATGTCAGAGGGAGATGAAGAGAGGACCAGGCGGGAACCTAGATTACCAGCCACTGCAGACTCAAGAGATTATTATCTGTTTACTTTAGGGTCAGGGTGAGAAGTGA-GCCATTGCTTTCTCCCCTTCCTTAGGTGACACCATGGATTGAGAAAGTTAACCAAACCAGGTTGTTCTGGGGACCTTTAAGGGACCAGGCTCTGTAAAGGCAGGCTGGAAGAGTGAGGCAGGGGCATTTAGCTATTCCCATCCTCATCTAGCTCCCCACTCTGGCTTCTCCCGCCAGCGGATGTGACCCTGGACCCTGAGACAGCTCATCCTAACCTAGTCCTGTCAGAGGATCGTAAGAGCGTCAAGTTCGTGGAGACAAGACTCCGGGATCTCCCTGACACACCAAGGCGTTTCACCTTCTACCCTTGCGTCCTGGCTACTGAGGGTTTCACCTCAGGTCGACACTACTGGGAGGTGGAGGTGGGCGACAAGACCCACTGGGCAGTGGGTGTATGCCGGGACTCCGTGAGCCGAAAGGGCGAGTTGACTCCACTCCCTGAGACTGGCTACTGGCGGGTGCGGCTATGGAATGGGGACAAATATGCAGCCACCACCACACCTTTTACCCCTTTGCACATCAAGGTGAAACCCAAGCGGGTAGGCATATTCCTAGACTATGAGGCCGGCACACTGTCTTTCTACAATGTCACAGACCGCTCTCATATCTACACCTTCACTGATACTTTTACTGAGAAACTTTGGCCCCTCTTCTACCCAGGCATCCGGGCTGGACGGAAGAATGCTGCACCACTTACCATCAGGCCCCCAACAGATTGGGAGTGACAGGTTGGGATGTGGGAATGACTGGGGTGAGGCAGGGTCAAGTGCTACGGGCC-TCCTTCCCGTGTCCTGCTGGAACGTCTTCGTGTCCACCTGGGTCCAGTCCTGAATCATCTTGGAGAAACACCTTGGTTTCTAGGATGGTTTTGTGTGGAGGGGGAGGTAGGACTGGGCTGGATGAGAGAGCACAGCTGTGACTTCCTCCTAACTGTCAGGGTGGGGAGCTGGTTCCCAGAGGATTGTCTACCCTGAAGTCCATCAGGTTTTCTGTTGCACAAGGACGGGTCAGGAAGGAA-GGAGAGGCTTTTCCAGAAACAAAAAATCTGT--GAGGGTCTGACTTGCTC-AAACCAGAGGAGGAAACAGAAACCCCTGCACATCTTTTTAGGGGGTTCTTTGACCCAGGATAGTCTTGCTTCTTGAGGTAGATCACAGGGGTCTGTGTACCTCTGAATTCATG-AGAGATGAATGACAGATGCTCTCATGGGTCTAGATATTGAGGAGTTTTTCTGAGGGCAGAGATTGGACATCAACAAGGCTAGAAGG---GTCAGGGAAGTGGGCTAAAGGAACAGATTCCTAGAGATTAATGAAGAGGAGGGAGGTTTCTTTGGTCTTCTATTCCAAGGGTAAGGTTGCGATTATGGGTAAGATTGGCCAGAGGTAGGAATGTGGGGAGAAGGAGAGGCTGAAAAGAAAGCAGAGGAGAACCCAGGTCCCTGCCTCAGCCTTCAGCAGAGTTGGCTTATTGCCTGCCTCTATA-------------CCAATAA----GTCAGTCACCTTGCTCCTCTCCAGAGGCAAAGTGGAAGAGATCCTGCAAGACACATCTATCCTTTCACAGTGTTCCCAAGGGAACTTGGAAAGGAGAGTCAGGTATTAGAGGAAAGAGAAGGGTATTTGTATACAAAGCCCTGGCCTTAAAGAATGTTACTTAGTAGCTACTCCCAAATTGTCAGCCTTCTTACCTGGCCAAGGTGTCCAAGCCAGAAAGGAAAAAAGGTTATGGAGTCTTTCTCACCCTAAGGACAGGGTGGAAGAGGGTGGTATATAGGGAAGGGCCAGATAGGCAACTTCATTTGGCTTGTGTGCATCTGGCCTGGAACTGGTGTT-----AAGCCAGGCTTTTGCTTGTTTGTTGCCATCCCTCACCCTTTGCCATTTCCCTTTTCAGAGAATGTAAATGATTTTCATGTTAGGCCAAAATAAACAACTTATAGGGTACATATGTTGTCATAAAAGGTAAAAGTGATGCATGCCAAACCAAACTAAACCAATTTGGATTATCTGCTATTCGGGTAATC-----TTCACAGAAATGACTGAGAGAAGAATCTGCAGTTTACTGAGGGCATTTCAGTTCCTCCTACCACCTCAACAGGACTTTGTCCAGACTCTCCTCCTCTTACCTTTGTGCC-TTGACTGTGGTTCTTTGTGGCAAGATACTTTGGTTGGTTAAA-ATAATATGGAACAAAGGATCCACTGAAGTGATCTCTGTGTTGTGTGGTAATTTGGTGACAGCCTTGTACTGAtgtgtaagaatcactgggtgttagacatgcatgttcctgggtctcacccttagtggttag-tcaaggtctggggtgggccgga s canFam2.chr12 3328160 2608 + 75515492 gtaagagggagaatcattaacatt--------tactcagagaaaatagtctcaaaccagaactgttccag------atacatggtcaccctGTCCCTAGACCAAAATGCTATCT-GCTGTGTATCCTT---AACATTTTCTGTTCTTT-CTGGCCCTTAAACTATGACTTGTGTTTCTTCATATAGTGAGATGA-------TGTCACAGGGGGGTGGCCA-AGGGTTAGAGAGGAGCCTAAACCATCAGCCTTTGCTGAATCAAGAGCTCATTACTTGTTTATTTTAGGGCCAGGATGAGAAGGGATGCCATTGTTCCCTCCTCTCCCGTAGGTGACACCATAGATTGAGAAAGTTAACCAAATCATGGTGTTCTGGGGACCTTTAAGGAAGCAGGCTCTGTAAAGGCAGGCTGGAAGAGTGAGGCAGGGGCATTTAGCTATTCCCATCCTCATCTAGCTCCCCACTCTGGCTTCTCCCGCCAGCGGATGTGACCCTGGACCCAGAGACTGCTCACCCTAACCTAGTCCTGTCAGAAGATCGTAAGAGCGTCAAGTTTGTGGAAACAAGACTCCGGGATCTCCCTGACACACCACGGCGGTTCACCTTCTACCCTTGTGTCCTGGCTACTGAGGGCTTCACCTCAGGCCGACACTACTGGGAGGTGGAGGTGGGTGATAAGACCCACTGGGCAGTGGGCGTGTGCCGGGACTCTGTGAGCCGAAAGGGCGAGCTGACTCCACTCCCTGAGACTGGCTACTGGCGGGTGCGGCTGTGGAATGGGGACAAATATGCAGCCACCACTACGCCTTTTACCCCTTTGCACATCAAGGTGAAACCCAAGAGGGTGGGCATATTCCTCGACTATGAGGCTGGCACGCTGTCTTTTTACAATGTCACAGACCGCTCTCATATCTACACTTTTACTGATACTTTTACTGAGAAACTTTGGCCCCTCTTCTATCCAGGCATCCGGGCTGGTCGGAAGAATGCTGCACCACTTACTATCAGGCCCCCAACAGATTGGGAGTGACAGGTAGGGATGTGGGGATACTTGGAGTGAGTCAGGGTCAAGAGCTATGGGCCTTCCTTCTTGTGACCTGCTGGAATGTCTTTGTGTCTACCTGGTTCCAGTCCTTCACTGTCTAGGAGAAGCACCTTGGTTTCTAGAATGG-TTTATATGGAGAAGTAGGTAGGACTGGTCTGGG-ATGAGAGCAGAACTGTGTCTCCCTCCTAAGTGTTAGGGTGGGGAGCTCGTTCCCAG-GGGTTGTCTCCCCTGAAGTCCATCAGGTTTTCTATTGCACATGGATAGGTTAGGAAGGAAGGGAGAGGCTTTTCCAGAAACAAAAAGTCTATGGGAGGGTCTGACTTGCTCAAAACCAGAAGAGGAAACAGAAACCCCTGTACATCCTTTTA-GGGGTTCTTTGACCCAGGATGGTCTTACTTCTTGAAGAAGATCAGAGGGGTCTGTGTACCTCTAGATTAAAATAAAAACGAATGTTAGCTGCCCTTATGGGTCTAGAAGTTAAGGAGTTTTTTTGAGGACAGAGATTGAGCATCAAGAAGATTAGAAAGAAAGTCAGGAAAG-GGGCTAAAGGAACAGATTCCTAGAGACTAATGAAG--------GGTTTCTTTGGTCTTCCATTCCCAGAGTAA-GTTGCCATTATGAGTAGGATTGGCCAGAGGTAGGAATGTGGGG---AAGAGAGAGTGAGAAGAAAAGAGAGGAGAATGCAGGTCCCTACCTCAGCCTTCAGCAAAGCTGGCCTAGTGCCTGCCTCCTTAGAGTTGGTTATCTCCAAGAAGTTGGTCACTCACCTTTCTC--CTGCAGAGATGAGGTACCAGAGACCCTTCAAGACACATCTACCCTTTCATTGCGTTCCCAAGGGAACCTGGAAAAGACAGTCAGGTATTAGAGGAAAGACAAAGGCTTTTCTATCCAAAGCCCTGGCCTTAAAGAATGTTACTAAGCAGCTGCTCCCAAGTTGTCAGCCTTGTTACTTGGCTAAGGTGTTCAAGCCAAAAAGGGAGAAAGGAAATGGAGTCTTTCTCACCCTGAGGACAGGGTAGAAGAGAG-AGTGTAGAGGGGTGGGTCAGATAGGCAACTTTCTGTAGCCTGTGTGCGTATGGCCTGGAACTGTTGTTCACAGGAGCCAGTCTTTT-CTTATTTGTTGCCATCCTTCACCTTTTGCCATTTCCCCTATCAGAGAATGTAAATCATTTTAACATTAGGCCAAAATAAACAACTTATAGGGTACACATGTTGTCAAAAAAGGTTACAGCAATGCATGCCAAACCAAAC--AAATGATATGGAATATCTGCTATTTGGATGATCAGGGGTTCACAGAA--GATTGGGACATGAAACTGTAATTTATTGAGGGTGTTTCAATTCCTCCTACCACCTCAACAGGACTTTGTCCAGACT---CTCCTCTTACCTTTGTGCCTTTGACTGTGGTTCTTTGTGGCAAGATGCTTTGGTTGGTAAAACATAATATGGAACAAAGGATCCACTGAAGTGATCTCTGTGTTGTGTGGTAATTTGATGGTGACCCTGTATTGAtgtgtaagaatcact-ggtgttaagaatgcacattcctggggttcatccttggtgatttgatcaagatctgggatgggtctgg a score=70591 s hg19.chr6_ssto_hap7 1641907 1858 + 4928567 ACATCTACATTTTAAACACACCACTCTCATTTGAGTCCGAAAACCCTTGTGAAACTAGTTCCAGAGGAGGTTTCAGCCATGTCCTTCCTCCCAGCTGGAGCCCTGCTTGTCTGTCCCCGCCTGGC---ACTGGGTCTGAAATTGGAGAGAAGTCATC--CTCTCCTGACTT-ATGCTGCC--CTCCCCATCTCAGGGTTCATTGATCTTCTACCCCTCCAATTCATGTCCCTCTGCTTCTGACTTCAGTAACTGATAGTC----ACTATGAGT----------CACAGGACACCAGACAGAAGAACTGGAAGATAGAAGAGGTCAGAGGGAGGGGTGTGAGGTGAATGT-CAGTGTGGGGA-------GTGGGGTGAAGTTTCAGGGGCAGGGGATGCTGTTGACAGATTTCTGTGCT---GTACCTAAGCCTAGGAGTTAGAAACCATTCACTCAGAAAGTGAGGATCACCTACTGTGTGTCCAGCACTGCATAACAGGAAGTG--------------------TGTTTCTTTGGTAGGTGGAATAG--TAGGAGTAAACTGTGCTTTCTGAGGACCGGGAGTCCTTTTCCCTCCCTCCAGCACCCTCATGATCCTTCCCACTTTCACCCCCACTGGCACCAGTGCTTTTTTTTAATGTATTACCTCTGTGCCTTCCGTCTGTAGATCTTACAGGCATCTGCCTCGGACCTCAGGAGAGTAGGGCAGAAGCTCTAGCTGGGTATAAATTGCACATAACCATCTCCCCAACGTAGCTACATAAAGAGACCAGCCTTCTGTCCTGAAAATGGC---CGATTTAAGATCCTCACCTGCTCCACTAG--GTCTCTAGGTGATATAATTGGTCATGAGCTTGAGGAAGAC--AAAAGCACTGAAAATTCATAAAGGGACCCTGGGCATGGATTGCTGGGGT-----TGTGTTTAGAAACCGAT-GAGTTTGTGAGGCCTCCGGGAGGCTCC---------------------------CGAGGGCGCGGGGACTACGTTTCCCAGGAGGCCTCGCGCGGACGCCC-GGGCGGGGCTGTGCGAGGGGTGGGGC-------------TGCGGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGCCGGTGAAGGACCGCGAGGCCTTCCAGAGGCTCAACTTCCTGTACCAGGTGAGTCTGCGACAAGGGCCCCACGGGGA------CGGTGCTCGGCGTCCCAGAGTGACTGCTCCCCTCCCGCAGGCCGCCCATTGTGTCCTTGCCCAGGACCCCGAGAACCAGGCGCTGGCGAGGTTTTACTGCTACACTGAGAGGACCATTGCGAAGCGGCTCGTCTTGCGGCGGTGAGACAGCCACGGGG--CGGGCGGCGGGCGGGACGCGGGAGGAACGCGAG-AGGGAGCGCGGGCG------CCAGACCACTATCCTCCTCCGCCCCCAGAGATCCCTCGGTGAAGAGGACTCTCTGTCGAGGCTGCTCTTCCCTCCTCGTCCCGGGCCTCACCTGCACCCAGCGCCAGAGACGTGAGTGCT-CCAACGGAGGTGGAAGACTGCGGAGCATTGGGGGCGCGGAGGGGGGCGGGGTGGGGGGCGGGCACTGGAGGCCAACAGCGCCTTTCTCACTGTAGATGGATGTTGGGTGTGGGATTCGCAGGAGTCTTCCTTCTTCGGGTTTGGATTAAGTTCCTAACGCCACTTGCACAAACTAGGGTTTGGGCTCGGCTGTTTTTTTTTTTTTTCTTCCAGTGTGGGCAATAAATAATAACTTT----TAAGAGGCAA-----CCCCACCCATGCACAATAATAGATGTTGTTCGGCTTTGTGGAGGAC--GATTCCCATCACCattcattt----attaagcaaatactt--attttctaaaatgtgtcaggtactgtgctagATTCATTATTCTCATTGAAATTACGGTCTGATGGGACAGACTAAGAAACAA-AATGGTGTAGAAAAAGAT s canFam2.chr12 3330768 1832 + 75515492 atgtctacattttaaacaTAT--ACCTCATTTGAATGTAGGGACCCTTGTGAAATTAATCCCAGAGTAGGTTTCGGCCAT----TTCTTCTGAGCTGAAAA-------GCCTGGCTCCCTCTGGCCTGATGGGATTTGAGAAGGGAGAGAGGCCTTCTTCTCTCCTGACTTAATGCTGCCCTCTCCCTGTCTTGGAGTTCATTCATGTTCTG-CCCTCCAGCTCATATACATCTACTTCTAACTTGAGGAACTGGTGGTCATGAACTATGAGGCAGAGGTAAACAAAGGATGTCAAACAGAACAAACCAGAGACAGAA---GTCAGAGTAAGAGATATGAAGTATATGCATAGAATGGAGAAGGCAGGGGAGGGGAGAGTTTCAGGGGCAGGAGATACTATCAAAAG-TTTCTGTGCTCCAGTACCTAAGACTAGAAGTT-------------------AGCTAAGATCACCTGCTGT-------GCACTGCATAATAGGAAGTGGGGTTTTGTTTTGTTTTGTTTGTTTTTTT-GTAAGTGAAAAAGAATGGTAATAAGCTGTGCT-------------------TCTTCCTTCCCTCGA-CCCCCTGATGATCCTTTCCAATT---------CTAGTACCAGTGCTTTTTTGGAATGCATGACTTCTTTTCCTTCAGTGTGTA-ATCTTTCAGGCATCTGCCTTTAGCTCCAAGGCAGTAGGGCAGAAGTTGTAGCTGGGTATAAATTGCACATAACCATCTCCCCAACCTATCAGCATGAAGAGACCAGTCTTCTGTCCTAAAGATGTTTCGCAGTTTAAGATATGCTCCTG-TTCACTAGCCTTTCCTACCTAGTATAATTGATCATGGGCTCAAGGAAGACTAGAAGGAAGCCAAATCTCCGAAAGGGACCCTGGACTTGGATTGTAGGGGTGGGTAGGGGTTTACAAACAGCTGGGGTCTGTGAGGCCGCAGGGCGGCGCCATAGTATAAGTATGGCGGAGGGAGGCTCGCGGGTCCAGGAACTACACTTCCCAGGAGGCCAT-cgcgggcgcccggggcggggcTATCGGAGGGGCGGGGCCTGCGTACGCTCGTGCGTGAGGGCT---AGCGCGGCGCCGATGGCTGGGCCGGTGAAGGACCGCGAGGCCTTCCAGAGGCTCAGCTTCTTGTACCAGGTGAGTCGGCGTCGGGGG-CGTACGGGGAGGCGGCCGGTGTGGCGGGCCACAGAGCAACGGTTTCCCTCCTCCAGGCCGCACACTGTGTCCTTGCGCAGGACCCTAACAACCAGGCGCTAGCGAGGTTTTACTGCCACACGGAGAGGACCATCGCCAAGCGGCTTGTCTTGCGGCGGTGAGACGGTC-CGGGACCCTGGCGGCGGGCGGGATGCGGGCAGAGTGGGAGCGGGGAGAGCGGGCGGAGCGATCGGACCA----TCCCCTCCGCTCACAGGGACCCCTCGGTGAAGAGGACCCTCTGTAGAGGCTGCTCTTCCCTCCTCGTCCCGGGCCTCACCTGCACCCAGCGCCAGAGACGTGAGTGCTCCCAGTGATGTTGGGTGATTGAGGAGCAC------------------CGGGCTGGGGAGGGGACCCCG------------TCCTTCCT-----TAGGTGGGCGTCTGGCGCGGGATTTACAGCGGCCATAC-ACAGCAGGTGTG--TTCAGTCACTAACTCGGTTTAGACGAACTAAGGTCTGGG--------------------------CAGTAGGGA--------AATGATGTTGCCGTAGGAGGCAACGCACCCCCATCCGTAC-----------CTTTATTTTGCATGGTGGAGCGCAGGATTCACATCACCATTCATTTACTCATTCAGCAAGTTATTTGTTTTTCTAAGATGTCTGAAGTATTGTACAAAATGGATTATTCTCATTGAAATCATAGACCGATAAGATAGACTAAGAAGCAAGAGTAGTGTAGAAAATGCT a score=71724 s hg19.chr6_ssto_hap7 1643765 1810 + 4928567 TAACTGGGGGAGTAGAATGCTCACTTACTCATGCCAGTGGTGGCGAAGTTTATGATAAGCAAAGGGAGTGAGAGATGGAAATTCTAGgcatgtgtgcagactctgagacaagagagcttgtggtgctgtcaaagaaatgagagttcaggaggctggagtttgaggtagg--agggcaaaacatgagactggagggggaaacaggccagttcttga--agTCTTGTTAGGGAGTTTGAACTTTATCTTAAAGAGTTCC-AGGAAATCGATGGAGCTTATGCCGAGGCCTGACACCATCAAATGTGCATTCAAATTGGGGGTGTGGTGGGGGAGCAGGGATACCTACTGAAAAACACTGGAGGCAAAACTGGCAGCAAGAGACCGTTACTT---CTAAACGTGGACAGTCTTTTTCCC--ATGTTCACCCTAGGCTGCAGGGGACAGCGCTGGACCGTACAGACCTGCCTAACATGCCAGCGCAGCCAACGCTTCCTCAATGATCCCGGGCATTTACTCTGGGGAGACAGGCCTGAGGCCCAGCTCGGGAGCCAAGCAGGTGAGAGG--TGAGGGAGAAAATGGAGGACACCCCA-GAGGATAGGGACAATGGAGAACGTAGAG-TGAAGAGGACACATGGACAGGTTCTGGGTTGGTGTGAGAAGTACCACAGTCAGAAAACTAATTCTGTTTCTCTGATTCTGCTCATTTACTCAGATTCCAAACCACTACAACCCTTGCCAAACACAGCCCACTCCATTTCAGACCGCCTTCCTGAGGAGAAAATGCAGACTCAGGGTTCCAGTAACCAGTGATGGATTCACCCCATCTCCCAAATAAAGTTTACTTGTTTTACATTCCATGATTCTGTTCTGTGGGTATTTCAACTCTTAATTCCATTTTCTTCTGTTTCTGTCTGTGTTTCTTGGTCAC----------------CTTTGTAA--------TCCCACCATGCAGGGAGATCGTGATTTCCATAGACCACTTGGCCTCACTCAGCAGCTTGCATTTCCAAGGCCATGGCCCCAGTTCCCTATCA--------------------------------------------------ATGT-----CCTGAGCCACCT-------------------TAGGGCATTCCATGTTTGGGCAGCCATAATTGCTGACTGAAGAGCTGGAGAGAATGATGC--CACTGCTGCTGTTTTTAAACAAGGGGAGAAATATGGGGCAGCGGAGAGTGTTTGTATCCTCTAGGCCCACTCATAGTCAGAAAAGACTCAGGTCTTTTCCCAGTCTCAAAGTTGTCTTTAATAAAATTCAGATAAAGGAAATGGCGCAAACCTGAACTAACAAAGTCAAAGATGCTAAC-AAAGGACACCGACAGACATTTTGCAATTATGTCCCATAGGTAAACTCTCAGAGTTTTCTTAAGAA----TAAACAACTAAAATGTTTTCTTCGATATCCCTAGAAAGCCTACTGAAGTACAGAATTCTTAGACTGACCTTTTTGCTAAATGCCAGCTAATAAGGTTATACCAAAAGCATACAAACAAAATTTACTACTTCCAGAATGCAG---TTTTCTTTTATTTCTCTTATAAACCCTGTGTT-TGCttatcgatagctgtataaaaaaatcacttcatcatgttggagcttaaaacataatgatttattatttcctctggttctgtgaactaggaattctgaaagactttggctgggtggt--tctcctgttacatatgaaatcagcttaaat-----agctgcatttagctgctatc--tcgtaggtggtctggaagacccaagaaatttcactcacgtgtttagcacctcattgcttctccaagtagccttgctccctcgctagctttgatgttcccacagcatggctgactcagggtagttgtatttc s canFam2.chr12 3332727 1803 + 75515492 TACTTAGGGATGTAAAATCCTTAATTACTTACACCAGTAGTGGTGTGGTTCATGATAAGCAAAAGGAGTAAGAGAGGGAAATTCTAGGCATGTGTGAGCATTTTGAGACA----AGTTTGTGG---TGTcaaggagaccagagttcaggagactggagtttgaggtaggcaagggcaaaacatgaggctagagaaggaaatagggcagatcttgaagaggcttgttaaggggtttggactttatcttaagggataccaaagaaattgacagactttaagcaggggTAAGA------TAAATTTGTATTCAAAGTTGGGGAGTGTT---------GGAATTCCTACTATATAACAGTGGAGGCAAAACTGGGTGCGGGAAACCTTTTCTTCTCCTAAACCTGGGCACTCCCCTGCCCCTACTTTTACCTCAGGCTGTAGGGGACAGCGCTGGACAGTACAGACTTGCCTAACATGCGAGCGCAGCCAGCGTTTCCTCAATGATCCTGATCATCTGCTCTGGGCAGACCGGCCTGAGGCCCAGCTGGGGAACCAGGCAGGTGAGAGGTTTGTAGAGAAAAACTGGGGATGCCCCAGGAAGATAGGGGTGATGGAGGGCATAGAGCTGAAGAGGACACATTG---GATTCTGGATTGCTGTGAG-AGTGCTTCAATCTTAAAA--AACTCAAATT-----------CTCATCTACCCAGATCTCAAACCACCACAACCCCTACCAAATGCAGCCCACCCCATTCCAGTCCACCTCCCTGAGGAGAAAGTGCAGCCTCAGAGCTCCAGTCACCATTGATGGATTCACC----CTTTCAAATAAAGTATAATTGTGTTTCACTTTATGTGC---TTCTGAGAGTGTTTCAGCTCTGCATTCTGTTTT-TCCTGTTTCAGTTTGTATTTCTCTATCACTGGCTAACCTCCCTGTCTTTGCCAGTGCTCATTCCTACCATTCA--GAGATCCTGATTTCCATAGACCACTTGACCCCACTAAGCAGCTTCCATTTCCAGGGCCCTGATCCTAGTGCTCCTTCATCCTGCTTTTCAGTACAGTGCCACATTTGGAACTCAGGATCTAGGGTTGTATGTAAGAGCTTGAGCCTTCCTTCATAGAGCAATGCTTCATAGAGCATTTTTTATATAGGGAGCC-TAACTGTTGACTAAGGGGCTAGGCATACTACTGATGCACTGATGTTGTTTTTAAACAAGGGAAAAAGTTCAGGGGATCAGAGTGGTTTCTGATCCTCT-------CTCAGAATTGG-------------TCTCTCCCAATTTCTTGGTTTTCTTCTATAAAATCCTAGTAAGGGAAATTGTGCAAACGTGAACTGACAGGGTCAGAGCTGCTAATGAAAGGACACTGGTGGACACTACACAAGTATGCCCCATAGGTAAACTTGCAGAGTTTTCTTGAGAATGAGTAAACAAC-AAATTGTTTTATTTGATATCTCTAAGGAACTTATTCAAAGACAGGATT-TCAGACTGACCTCTCTGCTAGGTACCAGCTAATCGATTTACCTGAAACATATACAAATAAAACTCACTATTCTCAGAATGCAATGTTTTTCTTCCCTTTTTCTTGCAAATACTGtgttgtacttatatattgctgcat--aaaaatcactgcataatgt--gaattcaaacaacagtga-----------------ttctgtggactaagctgtctgagag--tttggctgggtagtaatctccttctccatatggcatcagctggagtcactcagctgcgtttagctggtggctgtggcacctgatctggatgacccaagaagctttatttgcatt--------------------------------------------gtttggatgtcctcacagcttggctgtctcagagttgttggacctt a score=1581 s hg19.chr6_ssto_hap7 1645575 49 + 4928567 ttacatcccctctggcttctaca-aaagcat---------------cccaatatgtaagtgtttg s canFam2.chr12 3334721 65 + 75515492 ttaaatgctctctgacttccacagagagcatttcaagaggaccagctccaaggtgcaagtgctta a score=6692 s hg19.chr6_ssto_hap7 1645922 146 + 4928567 tcgagcctctgttggggtcacacttgctaatgttcccttggccaaagcaaggcacagtgccaatgccagattcaatgtggaaggggctacactggagtttgaacgct---------------------gggaggttcattagttccctggggatcaccag-tgtaaca s canFam2.chr12 3334988 167 + 75515492 tcaagcctctgttcttatcacacttgctaatatccccttga-caaagcatgtcaggtaaccaagcccagattcaacatgtaaggggctatactggggcatgaacactgcagggggtGGGGGAGAGGAGGGGAGGGTTGTTCATTCCCTGGGGACCACCAGTTGTAGCA a score=12123 s hg19.chr6_ssto_hap7 1646426 336 + 4928567 ATCTACCACATTCTTGTTTTGCCTTTGTCCCTGACTTGGTCTCTCCACTGCCTCCTTCACATGTCAGTAAATTATTTGCGTAGAAAATACTAAACAGTGTACATGTAAGTAAATGTTTCTGAGTCATCCTTTGACATTTTATTTCTGGAAATAGTGCCTACCTGGGTCAACTTTCAGTCCAACAAAAATGTGTAGCCTGAAAGTAACACCTCGTGCATACCTGGGTCCTTTGCATCCTCAGCTCACCTTCCATGGCTCCTCCAGTAAGTTTAATTTGGGATGACTGAGCTCG-------ACTCTTGCACACTTAATCTGATCTTTGGCTAAGTTTGTCTTGAG s canFam2.chr12 3335155 271 + 75515492 ATTTACCACATCTTTATTTTGCCTTCATCCCTGACTCAGTCTCTCCACTGACTCCTTCATATGTCAATAAATTATTTGCATGGAAAATAGTAATTAGTGTGCAAGTAACTAAATGTTCCTGAGT--TCTTTTAA----TCAT----------------TACCTGGGACAACAT-------------------------------------------AGACCTGGACCTTTTTTGTCTTCAGCTCATATTCCTTGGCTGCACCCATGAGTCTCACTT-------CTGAGCTCATTGGCTCGCTCTTGCACACTAGATCTGATTATTGGCTAAATTTGTTTTGAG a score=11053 s hg19.chr6_ssto_hap7 1648945 361 + 4928567 AGACCTGGTGCCTCCAACTATATCCTGCCTCACTCTGCTTT-------------GAAACAGGAAAGTGTTCCCCCTGGACTCTTAGAGTAGATGTGGGTATCTGAGTTT--------CTCTTCCTAAAAT---CCTTTCCTTCTTAGAGCGATCA-ATGAGCCCTG-TTGAATGGCCTA-----TGGAAGGGAAATGAATGTTCTAAATTTCCTCTGACCCTTTTCTTCGGACCC-CCAAAGGCATTCCCCACCAGCACCCACTATGACCCCATCTCTGACTGTAATACCACCCTGAGGTGCTGGGCCCTGGGCTTCCACCCTGAAGAGATCACATTGATCTGGCAGCAGGATGGGGAGGACTATACCTAGGACATGGAGCTTGCAGAGACCA s canFam2.chr12 3988274 372 + 75515492 AGACCTGGAACTTCCTACCTTAGGCTATCTTATCCTGATTCTAGATCTTCCAAAGGGATAGGAAGGTATCCC-----AGATCCTGGAGTTCAGGCTGGTGTCTGTATTTTGCACTCCCTCTCCCCCATTTGTCCTCTTCATTCTCAGCATGGTCACAACAGTGCTGCTTAGGTGGCCCACCCGGTATAATGCAAAT-----TTGTAAATTT--TCTGACCCTTCTCCTTAGATCCTCCAAAAATCTACCTGACCCGCC---------ACCCCATCTCTGACCATGAGGTCACCCTGAGGTGCTGGGCGCTGGGCTTCTACCCTGCGGAGATCACCCTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACAGAGGTTGTGGACACCA a score=4830 s hg19.chr6_ssto_hap7 1656021 444 + 4928567 TCCAGTCTCAACCTTT---ATCTTTT--ACaatttaaaatttatttattatCCATGTA--AGGAGAATAACTGGTACACTCAG----CGCAGTTCTGCATATATATAGGCCATAAAAGGAAATGAAGC-TTGCGTGACACTTTCC-GTGAAAGCAATAGTACCGAACTACAAATCAAACTGCATCTTAGCCGATCTCCT-----GAAGA----AGAGGAAAAGCCT-TGCCAAATGCGTCTTCCCAGCAGGA-TGCAAACCTCCTTCAG------CAAACACTG-----------AGTAAATCTGGGAGTGCTGAGACATAGT-ACAATGCGAGTTTTCAGTGTaattgaaaaaattgaaaaaattgaaaaaaAAATAACTAAATTAAGATTTTCGAC-TGTTTTCAAGGACAGTACTGAGGCAGCACGTTTGCAGAGTGATATTTTTCAAAAATGCTGTAAGAAACTATAAAA-------------------------------------------------TCAGCTGGAGATA s canFam2.chrX 78985145 516 - 126883977 TCCatttttaattttttttatttttttaGCCATTTTTAATGCATTT-TTCCCTGTGCACAAGAGAAATAACTGATAGAGTCAAAAGATACAGTTTCCTTTATACATAGCAGGTAAAAGTAATGCAAACATCACATGACACTTTTCAGTGAAAGTTACATTTCC-AATTACAGATCAAAATGCTTATTAG--GGTCTCTTTATGGGAAAAGCTGAGAAGGAAGTCTTATGTAAAAAGCACTTTCCTGGCATTACTACACTGATCCTTCAGGCTGCACAAAAATTACGGTCATATACAGTTAATTTGAAAATGTTGACACAATGTCACACTGTAAGTTTTCTGTACAATTAAATGTAT------ACTT-----AGAAATACCAGGATAAACATTTCTACTATATTTTAACTGAACTTGCCTAGCCAACATTTTCACTGA-----ATTTATCAAAGATGCTGTAAGATTCTACAAAACTGTGAGACATACCTAGCTCCAGAAATATTTCTTATATTCTTTCTTATTTTGGTTACACATA a score=2483 s hg19.chr6_ssto_hap7 1656483 180 + 4928567 TTCTACAAAGCAGAGTCAAAAAT-CACACGCTATGTAGTACACAAATAAAGTGGAAGCTGTCGATACACGTATAAATATAAAGGATTTTTGCTTACACAAAAAATATTCCAATGTCCCAATATGCAACATTGCTGAACAAATATGGAG----CTAAACAAGTGGCTTCTAATGAATTATTCTAAT s canFam2.chrX 78985686 180 - 126883977 TTCTA-GATGTACAGTTCCAATTGTGCTTACTGTACTGTGTA-AAACATAGCAAAAAGAGCAAATAATGGTATAAATCTTACAGCATTTTGCTAGCA-AAAATACATGCCAAAGTCACAATAAGCAATATTGTACCACAAAT-TGGAGAGCTTCAAATAATTTGCTTGTTTTTAA-TATTTTAAT a score=5072 s hg19.chr6_ssto_hap7 1657115 179 + 4928567 TGTGGATTCACCCTGTCTAGCAGGAGTCTGCAGCACTGGCTGAAAAAACTGT-----------TTCTGTGGTGCCTGATGAGAGACTTATGCTTTTGGCAATTGCATACTTAGATACGTCAC--CCTGTAGAGCCTTCACTGCTTCCCAATCCACCCCTCACTCCCACCTAATCTCTGACCAGGAGTAAACC s canFam2.chr1 46751906 169 - 125616256 TGAGGATTTAC----TCCAGCAAGAGCCTGCAGCATCTGTTGGATAAACTGCTGGTGTCCGGGTTCAGTGGTTCCGGTCGTGGGACTTGGGTTGTCAGTAGGGGCAGAGTTAGACCCGTTGCTTCCTGAAGAGCCTCCAGTGCTTCCTAATGCCCCCA-------------------GGCCAGGAGTAAACC a score=3351 s hg19.chr6_ssto_hap7 1657378 107 + 4928567 CAACTGTGCCCCAAATTCAGGATTCTCTACTT--TCAGTTCATCGTGGCTTTTGTG---GAGCAGGGCTACACATTGTGGGTAATCTGTGGGGTTTCAGTTACCTATTGCAA s canFam2.chr1 46757149 111 - 125616256 CACCTGTGCAGCAAGGTCAGGGTTCT-GACTTAGTGACTGCATCATGCTTCTCATGTAGGGGGCGGACAACATATTTTGCATAAGTTGTGGGTTTTCAGTTATTTGTTGCAA a score=5310 s hg19.chr6_ssto_hap7 1657498 245 + 4928567 CTTCTCACTCCATGTCCTTTATATGGTGCAGTAAAACTCTAGTGGGGGCTGCTGGTG-CTGGGTGTTGGCGGGGGCCTCCTACCCAGCAGCTGCTGCTGCTG----------AGCTCTGGAAGTTTGCTATGGGCCATGGATTGGGTAATGTGTGTCTAGGTTCTATGTAGGAAGGCTGACCACTTCCACCTGGAGCCATA--GCTCAGGAAGGAGGCAGATGAAGCAGATGAATAATCACCAGCGTGTCTGGAAAGA s canFam2.chr1 46762300 249 - 125616256 CCTCCTACTCCAGGCCCCAAATTTGGCGCAGATGAACTCTGCCCAGAAGTGCCACTGGCAGCACTACCACCAGTGCCCCCGACAGCGCTGGTGGTGCTACTGGAAGCTGATGAACTCTGGGAAGCTTGTGGAGCCCATGGATTGGGCAATGGATCTCTATTTTCTGTACGGGAAGGTTGACTACCTTCACCTGAGGATGTATTGCTCACTAGG---------GAAGCAAATGGATTACCACCAAACTGTAATAAAAGA a score=6911 s hg19.chr6_ssto_hap7 1659198 213 + 4928567 TTCTGCTCAGATACTGTTACTGTGTATGTTTCTAGAAAACACAGCCCCAAATGTGCATA--GTCTTGAATACAAAAGAATCAAAAGCCATCAATATGTGGTATAAATCCTTAAAGCATTTTAATTGCTAAAAATACATGCCAAAGTCACAGTAAACAACATTGCTCTGCAAACTATA-AGATATAAATAATTTGCCTCTCTATAATAATTTTACTC s canFam2.chrX 78985661 207 - 126883977 TTCTGCTTAGATTCTGTTGTA----ATAATTCTAGATG-TACAGTTCCAATTGTGCTTACTGTACTGTGTAAAACATAGCAAAAAG--AGCAAATAATGGTATAAATC-TTACAGCATTTTGCTAGC-AAAAATACATGCCAAAGTCACAATAAGCAATATTGTACCACAAATTGGAGAGCTTCAAATAATTTGCTTGTTTTTAATATTTTAATTC a score=14917 s hg19.chr6_ssto_hap7 1660556 1643 + 4928567 ACTATCACAATCTAATGTTTAAAAAGCAATTAA-TTGGATGGTTGTAAGGCAAAATTATGTATCTCAAATTTAAAAGTTGATACCTGTTTGCAAGAAACTCATTAAATGCCAAA------GAAGTACTTGATTCAAACAAGTTCCTTGAATTCAAAATCA---------ATTATTTGTATCTAAAA-------------------------------------------------------GTA--------------------------------------------------------------------------TAAATTGCGTTCTATCTGCATCACCATATGTTAACAAGACAATGCAAAGCTCAAAATGTAATTTTGTATTATTTTAAGTATTTGTGAAACATTATACAAATTAAATAACTTTGTTTTAAAAAAACAGAAAC---------ATCGCTGTG----CTACAGTATTCCAAAACTTCCAAAGATCCTACTACCCACTTATGTTGTTATTAGACATTATAAATTTGCTTTTTGATTCAAAAATTTCACTGTAGTAAACAGAGCTATTTGTTCCTGAAAACTAACTTTTAGGGTTTGTACCGGTG-AGAACTTTCTCCTTCAGGAGCCTGCAGTATGTG-------------TGGGCAAAATCAGATTCTATGATGCCTGGTATGGAACTTCTGTTT--------------------------------CCTTCAGGGT----------------------GACAGAGGGTCATATTGTTCT--------------------------------------------------------------CTGCAGAGCTCCAATGCATCCCCATCTTCAATCCCGCCAGGCCAAAAGCAATCCCTAAGATAAGTCTGGGTCTTT--GTGGCTGATGTTTGTAAACTGTGTTGAACCTGTAATGAGGCCTTCATTTCCCTTTAGGCTT----TGGTTAAAAGTGTGTC--------------------------------------------------------------------------ACA-------------------------------------ATTGTGGATCAATGATTAAGTTAAACTTCTCATGAAGTG-GCAGAT--TATATGCTGTGCCTGGTGGTGAGGTTTCAGGTTTCAGGTTCCTGCTGCTA-AAGCTCTGCATCCCTTC--CACTGCAGGCCCT-------TACTTGG----GGCAACAGTACTT------GTCCTGTGAGGAC--CTGTCAGTGTCACCCCCAGTGCTGGTGGT---GCTCAATGGTTG-------------------TTATGGAAACCAGGGATTAGGTAATGT-TCTCTAGTTTCTACATAGGAAAACTGATCACATTCAACTGAGGAAACATTGCTCACTAAGGAAACGGATGGATCCCCACCAAACT-TTCTTGAACGGCACTCAACATTGGTCCCTCAATGTCAGACTACATGTTCAACAGAGTAAAATATGCCCCTGGGATTCTCTCAAGATTGCTCAAGGCTTTGCTTTGGTATGTCATCATTTTATGCATCATTGTTGGAAGCGAGAAAAGTTTTAACAATTGTCATGTTATATCCAGAGGATAAAGCTGA-ATCTAATATCTAGATTTCTATGTATCAACTGGCAATGTTTGGGAACCGGCAATACTTAAGAACCTTATAAAGTCAGGGCTTTGAAGTGTACTTTA---AAATAGATTTCCCATCCTCTGAA----------------GTACACAA---------ACATCT------------------------------------------------------------TTCCAAAGGCACCTAACCCACAAGGATTCCTCTTGATAGAACCAGATGTGAAGTTGCTACAAAGAAATGATGGTGTATGAGAAACCATGACTTCCCAGGGTCTGCGTTTGCTGAAGTCACTGATTATGAAGTCATTTTCTCTGTGGGTTTGGGTGTTAGGAAGAATCCACTGTGACTCCATTGTGGAT-CCATCCTCACTCAAGA---------------------TTCAGAAAATCAGCAGCAC-ATTTGGTCAACACGGCATCT-----------------TTCCCTTGCACTGCTGGATGGAGCTAGTC-CAGGCGACATGAACTTCT s canFam2.chrX 78985879 2191 - 126883977 ACTATTATAGGCTAATGTTTAAAATGCAAATAAATTGGACATCTGTAGGACAAAACTTATTCACTTAACAGTGAAGGCTGATACCGGTTTCCAAAAATCACAATAAATGCAGAATAAAGAGAAGTGTTTG---CATGCAACACCTTTGAGTGAAACAGCATTGATTACAATTACCACCATTCAAAACAGAgaaggaaggaagaaagtaaggaaggaaggaaggagaaagggatagagggaggtaggaaagaaggaaggaaggcaggcaggcaggaaggatagatacaggaaggagggacagaaggatggaCTCCACCTTAAAATGCATATTAGACTTATAATTAGATTTAAAAGAATCAAAATGAAAGT-AAAGCACGTTTTTGTGTGTGTTTAAAGATTTAAGAGCCATTATCAAAAATAAGATACATTTTTTTCAAGGTACAGAAATGTAATTAGGATGGCTGGGAGCCCAGCAGCCTTTCAATGGCAGCATTGATGTCGCCTCC------TGTTGCTATTAGAGCCTGCAAGTTTGCCTCACGGTTTAAGAACCCCATTGCGTTGAGCTGTTCCAGTTGTTGCTGAAATCTGACTTCTGGATTCGGCAGCTGTGGAGGACTTGCCCCAGCCAGAGCCTGCACCATTTGCTGAATGAACTGCTGGTTGGGTCCAGATTCT--GATGTTGGGCTAGTGGTTTCGGTGGGTGTAGAGCTAGAAACAGTGGGCCCAGGGGGGCCTCCAGAGCCAGTAGAGCCAGGGCCTGCAGGGCCGGtgggtcctatgggcccaatggggcctatgggagtaaatgggactatggggcctatggggcctatgggTGTGACTGGGCCTACAGGGCCTATAGCGGTTCCCAGCACCCCTACCCCCACACCTGGAGTGAAGCTTGGAATGAGGCCAGGAGCTTCAGTGGCTAATGTCTGTAGCCCCTGCTGGATCTGCATTAAAGCCTGCATTGCTCTT-GGGTTTGACATGGCTGATAGTGTGTCTGGATTCTGCATCTGCTGCAGGAAAGCTGGGAGCTGTGGACGCATCTGCTCCTGCAACTGAGGATTTGCAGTAAACACCGGGCTATTCAGCATCATCTGTGCAGCTAAATCTGGATTCTGGCTCAGCGACTGCATCATGCTTCTCATGTAGGGTGCAGACAGCATATTCTGGATCAGTTGAGG--------GTTTTCAGTTATCTGTTGCAGCAAGCTCTGCATTCCTGGGGTACTGAAGATGCTGGCAACATAGTTGGCTGCAGCCACGGTGTTCCCAGTAGCACTGCTGGAGCTACTGCCAGAGCCACTGCCACTGCTGGAGGTTGTGCT-GGTGGTTGCAGAACTCTGGGTAGCCGGTGGTGGTGCCCATGGATTGGGTAGTGGATCTCGATTTTCTGTGCGGGAAGGTTGTGTACCTTCCCCAGAGGTGGAACTGCTTCCCACCGAGGCAAATGGATTACCCCCAAACTGCTCTTGTGCAGCATTCAGCATGGGTTCTTGAATATCAGTGTACATGCGTCGTAGAGCATTGTAGCCACCTGGGATGCTTTCAAGATTGCTGAGAGCCAAATCTTGATTTCTCATCATCTCTTGCATCATGGCTGGATTCCTGGCAATTTCCAGGGTCTGTCTCATTATATCTGGGTTGTTGAGCAGGTGACTGATTTCTGGATTTCTCTGAATCAACT-GCTGCATCTGTGGATTGGCCATAATGAGCTGCCTCATTAGATCGGGATTTGAAAGCATGCTCTGAACAAAGGGATTTTCCATGATTTGAATCATCATCTCAGGGCTGGACAGGAGCTGCTGCTGCATCTGGTTCTGGAGCTCAGAGAAGTTGGTCGAGCTCAAGCCCAGGCTGCTAAGGCCTGCAAGTCCTCCTAAGCTCCCCAGCCCAAACGGGTTGCTATTTGTGGAAACAGATGTGGAGTTACTCCTGGGAGTCGACG----CGGAGGTAGTATTAGTTCCCGCGGCATTACTAGGCTGTGTGGACTGGCCCTGAGGTCGGTTC-----TGGCTTTTAATTACAAGATGA----ACAGTCAGTCCATCATGGATGCCATGCTGAATCAAGGTATCTTGATCTTTTAAGATTTTTCCGGCAAAAATCAACACTAGCTGGTCGGTTTGGGATTTGAAGCGTTTTGAAATCGCTTCCTTAAACTGCTGGACTGAGCTATTCTCGGGCACCGCGAACTCCT a score=2445 s hg19.chr6_ssto_hap7 1662456 44 + 4928567 TTTTCCCTTTTGTAGTCTTCACAGTGTCTTT--TGATCTTGGGCTC s canFam2.chrX 78988070 46 - 126883977 CTTTCTCTTTGGGGGTCTTCACAGTAACTTTGATGATTTTGGGCTC a score=15071 s hg19.chr6_ssto_hap7 1678504 720 + 4928567 TGACATTTCCATTTCTTATG--GAATGTTTTGAACTTGTACTAACTTACCGGATTTTGGTGCAGAGAAATCCCCTCACAAGATAAGAAATCACATTTTTTCTTTG------TTGAAATTATTTATCTTCATTAACGTTTAATAACACCGGTGCAGTTATTTTTCAAAGAGCTTGTACT--CCAATCTTGGAGGAATTCCTTGAGTTGAAAAGCCCAGGGC---CTGAATAATGAGGGAGTCTCATTTCCAACAGCTTCCAATCAGCTGTAGGATTGAATGAAGACACATGTGATTGCATGATTTTAAGAGAGGGTAGGGGAGAGGGGCAGTGCTTGTTTCACACTTAACTGAACTACTTCCTTGGCCTCCACTCAAATTTAACTGCAGCATTGGTGACTTGATTTACAGA--GTCAGAAATTTCCTAGGTATGGAATGTGCTGTC-----TTAAATAGTAATGAGTCCAATCTATGT--AGAGTGTCCTTCTTTATCATTGGGGGTCATATGAAGTCAGCGATTCTTTTAGAAATTTGGGGTTACAAACAGAAGGCCTCAACTTACTTCAATTTGAAAAACCTGAACAAGGAATCTCTGGTGTCTGGATCCTTATTTGTCTCACAAAATTGAATTGTGAGCTGTGACATTTTCTCCCAAAAGTCTCTTTTAGGACAGAACttctggtaatggcaacatgaacaggtagatcagcaagtcttcctctaaatagcaat-atgaga s canFam2.chr12 71608160 705 - 75515492 TGCCATTTCCACTTCCCATGAAGGAAATTCTGCACTTTTCATCCCTCTGATGATGT-------GAGAAGACTCCTGATGAGAGAGAAACCCTAAGTTGTTCTTTGACATGATAGCAAGTGTT---ACTCAGTAGGATCTGATAAC-CTGGTGCACTTGCATCTCCAAGGGCTTGTGCTGCTCAGAATTGAGGAGAAGCCTTCAGTTCAAATGCCCAGAGCACCCCGAGTATTCAGGCA-TCTCATTGATGAAAGCTGC-GAGCATCTGTCAGATTGGGGACAGTCATCTGTCACTTCATGGTTCTGA-CGAGGATGGAGGACTAG---ACAGCTTGTTTCAGATTTAACTCAACTACTTCCCAGTCCTCCA-TCCAATGTAGCCGCTTCTCTGGGGACTTGGTGCAGATAATGTAAGAAAATTCTCACGTGTGGAACATGTTTCCAATACTTAAGAAGCAGTCAGATGGAGGTGTGGTGGGGGCATCCTTCTTGGTCACTGTGGGTTATATCAAGTCAG----------------GTGTGAGTCCAGACCCCAGGCCTCCTTGCATTTCAGTTGGAGAAACCTGCATACAGAATGCCAGGTGCCTGAACCCTCACTGGTCTCACAAGATCACACCATAGGCTCTGACCTCTTCACCCCCAATCCTCTCTCAGGTGAG-ACTTCTAGTAATGGCAGGAGGGA---GTGGTTGAGTCAGTTCTTTCGCAGAAGGCAGTAATGAAA a score=9804 s hg19.chr6_ssto_hap7 1679231 419 + 4928567 aaaatcataaaaataaa---------tatttgaagtcactggaaaacaaacaaaggcgagcagaaaTGTAATAGTGCTTTGATCTTGAGACTATCTAT--TGGGTAAAAGCTGCAAGTTGGTGGCCTTTCCTCCTTACCTATGAGTTTGCTCCAAACTCCCAGCAGGTAACTGCAGCCCTAATGGATCAATAGGGCAGTTTATAGAGTTAAAAGCCCAAATAAGCTAAAAATGTTTACATTTTTACATGTTTACATCAGTCAGGCAATTTTGAA----AGAGATCTGCTGAAGAATTCAGATTcaaaatctgaatacaaactatgctcacatccctggttgaacactaaactccccatgggtgtgggacactcaggggaacctggggaaaaatcagaaagaacctagagtgagGTCTACCCTTGAAAGAGTGAA s canFam2.chr12 71609575 394 - 75515492 ataataataataataaataaaaataGTATTTGAACTCACTGAAAAGTAAATGAAGGCAGGCAGGAACATGAGAGAACTTTAATCCTGAATACCACTATGATGGGCAAGAAGCACTAGTT-----CCCAGCCTTCTCACCTGTGGGGGCTCTCCCTTCCCCCAGCA--TAACTGCAGGCTC---------ATGGGGCCGATGACAGCAGTCACAGC----AGGTGCCAAGGACCTGGACATTT---CATG------------GGGAAAATCTGAAAGTGAGGGAGCAGCAGAGGGTCGC-GATCCAAAATCTGAATACAGGCTCAGTCAAAATCCCTGG--AACCACCACACTCTGCAGGGCTGGGGGACACTCAGGAGACACTGCAGAAAAAGCAGAAAGAACC-AGAGGGAGCTCTAGCTTT-AAAGAGAGAA a score=1684 s hg19.chr6_ssto_hap7 1679650 90 + 4928567 ATAATCCTGGCAATATCTGAAAGTCTGCAGTAACATAGACTGCTTGCATTTGTCAACCTGCATACAACACAGGCAGAAGAAAGCAAAAAT s canFam2.chr12 71610108 85 - 75515492 ATTGTCCTAGCCCAATCTGTGAGTCT---GTGCCTTTGACT-TATGAATTTTACAATCAGCACAAGGCTCAAGCAACAGCAAG-AAAAAT a score=3442 s hg19.chr6_ssto_hap7 1679762 88 + 4928567 AGGCAGGATGCAGGACAATTTAGAGGGGATTCCAGAAGCAAAACAAACACAGAGAAGCTGAATTGCAAAATCTTAGCAGAAATAGCCC s canFam2.chr12 71610342 88 - 75515492 TGGCACGACATTTGGAAATTTAGGGGACATCCCAGGAACAAGACAACCACAGAGAAGGTGAGTGCCAAAATCTGAATACAGACTGCAC a score=5517 s hg19.chr6_ssto_hap7 1680580 356 + 4928567 GATGCAGAGTAGACACCCAGAGCCCCCTGCTGAAAATGCAGCAACTGGATATCGGTAAACAGAGCAGAGACATCAGCTGT-AGCCAACTGCAGGGGTAACAGATTTCACAGTTACCAGTGCAGGGAAAGTTAACCACGTTCACTGAGGGGCAGGGGTGGTGGTGGTGGGAGAATTGCCAtctttagagagattgttgtagattccagactctctaaaacaaaacatataatgtccacttt---atcaaataggatcagacatagaaagaaaagaaagaaatgtgtgactataataaggaggaaattaaaaataaatgggtttcaatgggtccagatattgaaattatcagcaaactcttt s canFam2.chr12 71610459 285 - 75515492 GATGGAGGGCAGCTCTCTCAAGACTGAGGATGGAAATGCAGCCACTGGATGTGGGAAAACAGGGCATAGACAACAGCTGTCAGC--ACTGCAGGG-------------------TCCATGCAAGTGAA---------------------------------ATACTAGGAAaaaagcaatcttca-aaagaagagaatagattccagatctgctaaaacattaaatgcatattccacttttaaaatacttattaccagacatacaaagaa---acagaaatgagtgactctaat--------------gaacgcat---tcccagtgcgcccagatgttggaatcagcaccagaggctcc a score=2674 s hg19.chr6_ssto_hap7 1680936 90 + 4928567 aagacagttttgaa-aaatatgtggaaagaaatgaaggaaatatcatttctaaagagtgaatagaag-------taattgcagcagagaaatgaaaac s canFam2.chr12 71610966 98 - 75515492 aagaaagaaTTGAATAAAAgtgttgaaggaatttaagaaaatcttgttattaaagcatgaacagaaaggaaatctgaatgaaaaagaggaatgtatac a score=3296 s hg19.chr6_ssto_hap7 1681044 115 + 4928567 gaaattctcaaactggatagaaaaa---taatgacagtgctctggatgaggtcaacagaagttttgagatggcagaataaagaatcagtcagtgtccttgaatataaatcaacagaaa s canFam2.chr12 71611292 107 - 75515492 gaagttctagaactgaaaagaaaaaatgtaacggaaattctgtaaaag----ccactgaagctttggaaaggcagattaaagaatcaatgag-------gaaaagaaataaaaaaaaa a score=3364 s hg19.chr6_ssto_hap7 1681167 181 + 4928567 tctaaaaataaaaaagagtgaaataagattaaagaaaagtgaagaaaacttcacaaaccctcagaaaatataaagcaggtaaacaggtgaccaattggagtcccaaaagaagatagacacaggatcagaaaaaaaattcaaaaaaatctatggctgaaagattcccaaatttgatgaagaa s canFam2.chr12 71611586 167 - 75515492 taaaaaaaagaaaagaaaagaaaaaagattggaaagaaactaataaaactcagatatccatgtaagaatgttaaaatggcaaatagatgatca----gagtccaaacatgaaacagg---------aaaaaaaaaatcggtttgaatcca-gtttgaaaattcttctaatttagtgcagga a score=7136 s hg19.chr6_ssto_hap7 1687662 391 + 4928567 CCCAGGGCAGGATCAGGAAAACAAGGACAGGAGACGTGCAGGGGCTGGACCACCTTCCCTCTTGGGTGACTGGAGGTCTGTCCTCAGCAGT--CTTTCCCTTCTGACCTATGACTTCTGGGAATCGGGTCCCCATCTCTAGAATCATCAAGGTGATGACTGGTCCTTTATTTTCACAAGTGCTTTACGTTACAGAAATTTCAGCAAGCAGGGACTATGACTGGGTAAGCATGAgtgtttgtgttttgtgtgtgtgtgtctgtgtgtgtgGTGGGGGGCGGGGTATGTGGGGTACATTTTATTATCAATGCAG---------------------------AATGGAACATGACAATGCAGAT--CCCAGTC-CTTACATACCAGAGCTCTTCTTCCGCTTCATCGCAAGTGTAGCCACCACAGC s canFam2.chr12 71576536 364 - 75515492 CCCAGGTCAGGGTCAGGAGAC--AAGCCATGAGGTGAGGGGTCACTGGACCACCTGACTT--------GCTGGAGGTCTGTCCTCAGCAGGGGCCTTCCGCTCTGTCCTGTGACGGCTGGGAATCAG-TCCCCGTCACCAGAATCACCAAGGCAAAACTCTGGCCTTCATTTTCCCAAGTGTTT---GCTGCACA----------------------------GTGAGTGTGAGTACACAGCTCCAGTGTA-----------------GGAGAGTAACCGCATATGGACGGTACTTCCCGTTAACAAGGCAGGACAGCGTGCTCCCTAGGAAACCCCCCAACAGGACAGGAAAACACAGAGTATTCAGTCGGTTCCCTACCTGAGCGCTGCTTCCTCCAGATCACAGCTCCAATCACCCCAGC a score=8604 s hg19.chr6_ssto_hap7 1688081 238 + 4928567 GATAGTGCATACCAGAGTATCTTAGTTTTTAA---TCTCCCTAAAAGTATACCATGTCACTCATAGATTGAATATATCAAAGTTGTCTTCATATGGAAGCCATGAATTTGTCTATATGGGTCTCAGACATATCATTGAAATATAGCATGCCCAAGAAAGTTTAATTAATGTGTATTTGAACAACTACAGTGTATAGACATCAACCAAAATATGAATTATCAGTTCATAGTATCAAGTCTTC s canFam2.chr12 71587591 228 - 75515492 GATAGTATATTTAGAACATTCTTAGTTTTCAAGACCCTCTTCAAAAAAATAC--TGTGACATATAGATTATGTATATTAAATTTCTCTTCATATGGAAGTCATAGATTTGTCTATGTGGGTCTGAGACATTTCCTTAAAATATAGCAT------TAATATTTAATTAATGTACATTATAACAGTTAAATTGTACTGACAT-----AACACATGATGTACCACATCAAGATCATAAGTGTTC a score=6246 s hg19.chr6_ssto_hap7 1688321 301 + 4928567 AAATGCACATCACTGTTGCCAATCCATGTCTATATTTCACTGGAAATCTGGCATAATATTTTCTTTACTTTGGTGAATGTAAGAAGGCAAATAAGTCTTGAGTACTCATCCTAAGTTG--TATTTATTGGATACCACATATATTAAGTACCCTACAGACCCAGTAGACACATTTCaaaaattataaaat----aattaaaCCTTACAATCCCATCGCATTAGTAATCTT----------------------TACTTTTCCACAACTTGAAACAATTCTATGTCCT---TCAACTCTCGGACCCCTTTCCTCATCGTCTCTTCCTAGGTCAAA s canFam2.chr12 71588019 325 - 75515492 AAATGCCCATCACTGGAGCTAACTAATGTCTCTATTGCTTTGGTTGTCTTGT-TGGTATTTGCATTCACTGGGAAAACATAAGCAGGCCCATAAGTCTT---CGCTGAACCCAATGAGAAGATATATTGGACA-TACATCTATCAGTTACCTTGTAGGCCTTGTACATAC-TTGTAAATGTCATAAAGTGGAAGATGGACATCTGAGATTCCACTACCTTAG-AATCTTTTTTACTTGTTTCTCCTGCCCATACTTTTACCCAAATTCAAACAGTTCTGTTTCCTTTCTTCATCCTTGAAACCCTCTGTTCTTCATTTCTACCAAGGTGAAA a score=9328 s hg19.chr6_ssto_hap7 1689577 401 + 4928567 ctctagatttagtactgtcagtaagcagaggcaattctacaattcggtatttcaataaatcttacctttagggagggtggactagagtgcagataaagcttaatccgtagagaagcatcagccactcatactagccgg----gagagggtttagaca------aaattatgaagtac-------ttttgttt----cgcctcactt--tctcatgggctgagagtgatccagtgtggtgttggtattttgtgatataatttatgtcccagagg-gactaatatggcccagtagtgaagaccagaccagctcctggcaacactgatgcccagct----gtgccagacaagttcccagatattaggggctgct-----ttttcttGATTAAATTCAATATTTAAAAATATCAGCATTACGTTTGAGAAATGATTAA s canFam2.chr12 71588909 416 - 75515492 ctcctaactatgtgttgtcaggaggtgtgggcaattctatgcttgaacatctcaaagaatctcatctctgggcaggtcagaccagagtgaggataaagtatcgtg-gtaaagaagcagcgattgctcacattggctgacacagggagaggtttggtattttgtgggttatacagtgccttgtttttttgtttgtaatgacacaaatagtgtcatgatttgaattt--ccttgtctgatgttgatgttt-------------atgtcctacaggagaataatatggccaggtagttggcattag-ccagcttcttatcacactggcagccaactctcagtgtcagaccagttcct-gatgttgaaggctgctattttttctctctcTTAAATTCCATATTTTAAAATAACTATAACCCATTTCAAAAATAATTAA a score=1044 s hg19.chr6_ssto_hap7 1689978 20 + 4928567 GAAATGTCATATAGTTATAT s canFam2.chr12 71589507 20 - 75515492 GAAATATCAAACAAATATAT a score=8796 s hg19.chr6_ssto_hap7 1689998 215 + 4928567 TAGTAATAAATATGTGCAAA---AAATAAGAATGTAGACTACAAAATGGGAACCAGAATTAAAatccatcagcttggcaaagacagaagtaaatgatggtagtattgatcagagtacagggaaaatgtactgttacgaagactgatggcattgaaaagtggtacaaaacttctaaagggcacttttgcaaaatgtctcaataatttaaatgttctgac s canFam2.chr12 71589723 217 - 75515492 TGCTAATAAGGATACACAAACAAAAATGAGAATGTGGACTAAGAAATAGGAATAAAACTTAGAATCTATAAGCTTGTCAAAGGTGAAAGTAAGGAATGAGagtgtccatcagagagttgggaaaaggcaacatcatagaagttgatgagagtgaaaactggcataaaatttgtaaagggtgcttc-ataaaatatctccataatttaaatttgcttat a score=3439 s hg19.chr6_ssto_hap7 1690514 74 + 4928567 attttgacatgaaaatttctcttttaggaatttatcccaaggaaataattacatatctttctaaaaacgcatat s canFam2.chr12 71589940 73 - 75515492 attgtgacacagacattt-tctttgaggagtttatcctaaggagataatcacacatattctcaagaatatattt a score=25260 s hg19.chr6_ssto_hap7 1690899 1078 + 4928567 taagaatgttccttgaattgtggtttataaaagcaaaataatggaaataacccaaaGATTGTAATGAATATAGTGATGATagttatcaataatggagcatttagtatgactcagaaaataatgccatg-gctttacatagagagtcagatttaatcctcaatgcaaacccatggggaactcaatatgtgatcc-tttgtacagacagggaaggagagaggtaaagA--------AGGTGGTGGGGCTAGGGTTGAACCCTGGAGATTTTCTCTCAGAGGCCTTGTTGACTTGTCTTCCATTGATTCTCTCTTCATC------------------TGCACCTTACACAAGTGAACTGTTTTGATGTCCCAGAATGTTCTATGGACAGGAGGCCACTGG-CTCAGAGCTCAGGAAGACA-AGAAGGGCA--ATGACTTAACTGCCAAATTCACGCAGAAGTCCGTTCATCCAGGGTGTAT--------TTCCAGTGA-TCAGGAGATCTGCTAAGCACTTGAGGATATAATGAAGAGCAAGAGTAAAATCTTGG-AGATGGGGAGTTTTCAATATTGTAAGGAAGATAAATATTTAGCAAA------------AATTGCCCCAAGATTGTGAAATTGCTAATGAGCGTAAGGGAAAAGTTTGTGATATCATGAAAGCAGGTTACAAGGAGACCTAATGGGT-CCCTACCACTATTACCAATTATGTGTgaaagatgtaagaaaacagcagttatgagatttgaacaaatttataaacaatttcatgcagagaactagaaagagctct-ggaattttaaaatatgatcattgaaataaagagtttaaaaaatgaactga--aatgaaagttgt-gtgctgcaaggtagtacaaaataaaaacgtgatgcca--agcatgatagaactttaagaatattatactatcaattaaggaattccagcagtctcataatataagttccaataaccatagaaagt---aatt------aaaagtaattcaagaaaatgttttgaaggctactg-----acaaaaatgtatagtgtgaatggctgcaacaaagttctcaatacaggagatggaaacagacccacaccaagac--tcatgacaacaaaatttcagaGAGTGAAAGA s canFam2.chr12 71590013 1112 - 75515492 caaagatgtttcttgaattgtggtttataaaaacaagg-aacagagctcatctaaatgctataataaatatgataatgatatatataaatagtggaacacctaGTCTGTCTCAAGGATTAGGACCATGTGATTTATACAGAGGGTCAAAGTTAATCATCCAAGCAGACTCATGAAATATCACATAGGGGATCCCTTTGTATAGATATGGAAACAGAGATTCGAAGAGAATGAGAAGGTGGAAGACCCAGGTTTCAACGCAGCAGATTTGCTCTCAGAGATCTTGAAGATTTATCATTCATTG-TTACCTGTCCATCAGGAAGTGGTTACGACCGTGCACTCTGTGTAAGTGAACTGTTACAATGTTCCAGAATGTTCTGC-CATAGGAGGCTGCTGGACTCAGAGCCTAGGAGGTCATTGAGGGGCAGTGTGACTCTCCTGCTCAAATCACACTAAAACCCATCCA-CCAGTGTACATCTCAAAGCTTCCAGTGGCTCAG--GATCAACTGGACTCTGGAGGCTACAACACAGAAAAATTGTGAGCCCCTGGTCAATATGACACTGGCACTGTCATGTGGAAGATGAGCATGTAGCAGAATAGACAGAGGTAAATGT----AAGTTGTGCCTGAGATGAGTGGTGTGTGACAAAATACCATGATACCATGAAAGCAGATGACCGGGAGACCTAGAAGATCCCCTAACACCAGTATGAATCATACCTGCAGTATATAAATAGAaaacaa-----------aaacacaactatacacagtggtatacatagaacaaggaacagctctgggaaattgaaaatatgagcatagaaatgaaTTATTTAGTTGATGCACTGGACAATTAACGTTGTCCTTCCCTGAAGCAGTAC-AATCAGGAAGGTGAAGACATCAGCAGAGAAGACCTGT-------TTGT-TTCTTAATAAAGTGATTCCAACAAG-TTATAACACTATTTTTAaaaagaatagagagtaggaattgatgcaaacaatatttcaagaatatttctcagagttgacaggatatacacacatgt------tgaaagacctactcaaattcttaactgaagtagatgagaagagacccacaccagggacgtcatgaaaa------gtcagaaggtggaaga a score=6734 s hg19.chr6_ssto_hap7 1692141 184 + 4928567 GGGATGGCAGAAGTGCAAGGCCTCGTTTCTGCTGGATGAGCCTTCTGGAGACTGTCTCA--GGGTTTTCTGAGAACTTCTTTAAAACCTGGTCTACGGGCATGCATTACCCCAGTTATTTTTTCCCTAAGTGAAAAATCAACCAGAGGAGATGATTTATTTTAATAGCCTTATTGCAG--GAGAGGAA s canFam2.chr35 21961648 185 + 29542582 GAAGTGACATAAATACA-GGCCTCATTCCCACTGGTACAGTCTCCTGAAGAACATCTCACGAGGCTTCCAGGGAACCTCT--AAGAAGTGGTCCACAGACACCAATTATCCCTGTTATTCCGCCTTGAGTGGAAAGATCAGCAAGAGGAGATGATTTATTATAATAGACTTATTATGGCTGAGGGGAA a score=15878 s hg19.chr6_ssto_hap7 1694675 973 + 4928567 CTGTGGATTCCAGGGCTGCTTAGGAGGAACCTGCATTCCCGC------GTGGATGACCTCAGGCTCC------GCCCCTTCTGCCCCACT--CAGCCCTCACCCAGTGCCTGAGAGCGCTCAATCAGAATGCGAGAGCAGCGCGGCGGCGCCCCCGTGTGGCCACAGGGACGAGGACAGAGGACCGGACCCCGCTCCCCTTTCTCACCAACCAGGACCTCCGAGGCTCTCCCTCTGCTCCCAGCACCTGGACAGGGCTCTGCACTCAAGGAGCCTCCGGGTCTCAAGTCAGGCTCTGAGTCCATTCAGCTTCCCAAAATCCATGTTGACAATGACATTTCCTC----TCACCACTGAGTGACTGGACTTTTG-CCTCAGAGCAGAGAGAGGCCTCCAGGGCAAAACAGTGGGAT--CAGATGTGG---GGATGACACACCCCCAAATCCTTGCTGCCACAGGACCCAGTCCCTCAGCCTCCAGATGGGGCCTTGGCCTCCCG---TCCCCTCCTTTGTTCCTGCTGCTA-----GAGGCTG--CTCATCCCAGGAATCAGCCTGTTAGCCTCCAACCCTGGGGTCCAGGGACAGCAGCTCCTAGTGCCTCGGTCCAGGAAGAAG--GGAACCTCCAGAGAGCAGAAGAGAGAAGAAATGGATCATAAGAGAAGGGGGCAAGGGGGGAGAAAGAGAGTGAAAGGAGCCAGGGAGGAGAGAAAAATGGAAAACA-TCCTGTTAGGAAtgtgtgtgtttgtgttgatgtgtgtgcgtgcaggtgtgtgtAGAGTGGGAGAGAGTTTCTAGGGTTCT------GAGGAGAAGAGAGCTGCTATACAGGTGCTA-AGGGGC--CCAGCCCTGGGAATTTCAGGGTCCCGCTTTCTGAGCTAGGATCTTAAGGCCCTATCAGAGTCCACCCCCAGGAAGCCTGCAGTCATAGCACTGGGCTAGCTGGACGGCTGCCTCTTCTTTGCCTTTGACAGCAGGAGCTGCCATGCCAGGCCCAGGGGCCC s canFam2.chr12 4026850 907 + 75515492 CTGTGGAGTCCAGGGCTGTTCAGAAG----CTTCTTTGTGGCAGTATTGATGATGCTCCCAAGCTCCAGGTCAGCCTCCCCTGAGCAACTTACAGCCCAGACCC----TCCCAGGCTGCTCAGTCAGAATTCAGGAGCAGCGCAGCGGCGCCCCCGTGTGGTCACAGGGATGAGGTTGGAAGACCAAGTTCTCCCTTTCTCTTGCA-CAGCAAGGACCTCCCAGGGTCTCCCTCTGCTCCCAACACCAGATCAGGGCTTTGAACACAAAAGGTTGCCCCTGTCCATGTCAGGCT-GGGTTGCAAAATGTTCCCCCAAATCCACAATAACATAGATGTTTTCTTTGCATGATCACTGA----------TTCCGCCCTCAG----GGGCAAGTTCTCCAGGCAATCACAGCTGGTTCCCAGATCTGGTATGGACCGCACA-----AAGAAATTG-------AGTGCCCGGTCTCCAA------AGATAGGACCTAGGACTCCTAAGTTCCTGTCACTTCTTTCTGCTGCTGCCTCTGGGGCTGGACTCAGTTCAG---TAAGTCTGAGAACAT--AGCATGAAGGATGAGGGGCAGAAGCCCACAGTGCATTGGGTCTAGAAAAGGGAGGATGCTCCTGGGGAGTGAGGCTAG--GGTGTAAATAAGAACATGAGAGGGGAAGAGCTTCCAAGGAG---GGAAGGAGTCAGGGAGAAGAGGGGCATGGGAAGGGCTGGTCTAAGGAACACCTGTTTACAT----------------------------------GGAGAGGGCTCTCTGGGTCCTGGACCAGAGTGAAGGGCAGATGCGGTACCAGCCCTATAGGGACCACCAACCCTGGG-TTTTCAAGGTCCCAC--TCCGTGTTAGTACCTTATGACCATGGCTGAGCACACTTC-----AGTCGTCAGCCTT------------------CAGTTGTTCCTTCCTCCTCTATGGCAAGCAGAGCCTCCCCACCAAGCTGAGGAGCCC a score=3224 s hg19.chr6_ssto_hap7 1695859 152 + 4928567 CGCCCATTTACCTCTTGCCCC-AGACCCTCCCCACTTCGATACCCTGGGACCCAGGCATCTGCCTCTTTCCTTCTCCTCCGGCCTCCCAAGCACCTC--------------CAGGCCCTGCTCTCTGCCAACCTGAACTCCAGGACC------------CTGTAGCCCCACCCCAAAat s canFam2.chr12 4027834 167 + 75515492 CACCCATTTCCCAGCAGTCCCTACACCCTCCATAACTCACTGCCG--------AGGAGTCTGCATGCTTCCT----CTCTGGTAACCCAAGCACCCTGAGAGTGGACCCCTCAGGCCCTGTTCTCTGCTACTCTCAACCCCTGAACTTAGAAACTCATGCTACATCCCCAGTCCCAAAT a score=3269 s hg19.chr6_ssto_hap7 1698461 87 + 4928567 AGAACAGTTGCTTGGAGATTGCATGCTAAGTAGAAATGCCAAAGGCTTCAGAGTATGAGGAGATGTTGGAATTTTAGCCCAGCCAAA s canFam2.chr2 86779303 86 + 88410189 AGAAAACCCGCTCGGAGACTGAAAGCTGAATAGGAATTTCAGAGGTCTTAGTAC-TAAAGTGATATTGGAGTTCTGGGCCATCCAAA a score=3724 s hg19.chr6_ssto_hap7 1698572 99 + 4928567 GAAGCACTAT------GAGTGAGGACCCTTGCCTTGGAGTAAGGACTGCACTGAACTAGACTCATGTTAACAAAAGCTAAAATCAAGCCTAAGCAGAATCAAAGT s canFam2.chr2 86779450 105 + 88410189 GAAGGGCTATACCCTAGAAGTAAGAGCTTCACCTAGGACTAAGGGCAAAACTGAAATAGACTCACATTAACAAAGTCTAATATCAGTTCTCAACAAGATCAAGAT a score=66805 s hg19.chr6_ssto_hap7 1712362 2536 + 4928567 TCAGGAAGGTCGGGGCAGCAGATCTGTGT-GTTAAATATCTATGTCAAGTTATTTCCAGGAAGAAGTTTCATCTGTGGTTT-CTTCTTCCCCAGGT-CCCACAGTCTTCATTACAACCTCACGGTGCTGTCCCAGGATGGATTTGTATAGTCAGGGTTTCTCGCTGAGGGACATCTGGATGGTCAGCCGTTCCTGCTCTATGACA-GACAGAAAGGCAGGGCAGGGGCCCTGTGGACAGTTGGCAGAAGCAGTCCGGGGAGCTGAGACCTGGGACACAGAGACCGAGGACTTGACAGAGAATGGGCAGGACCTCAGGAGGACCCTGACTCATATCAAGGGCCAGAAAG-------GAGGTGAGAGTCGG-CAGGGGCAAGAGTAATGGCAGAGGCCTTCTCCAGGAGAGTTGGAGGCAGAGAGCAGGGACCTGTCTCTTCCCACTGGATCTGGCTGAGGGTGGGC-TGAGAAATAGGGGTCAGTGCGGCTCAGCAGGGAGGTGAGCCGGCACTCAGCCCACACAGGGA-GACATGGAGGAGGGCCAGGGAGGGGTCCCAGCTGGGCTGAGTTCCTCACTTGGGTGGGAAGGT--GAGGGGTTCAGG-------AATGAACTGCTGGGTGGGGGCAGGCTTGCATTCCCTCCAGGAGATTAGGGTCTGTGAGATCCATGAAGACAGCAGCACCAGAGGCTCCCGGCATTTCTACTATGATGGGGAGCTCTTCCTC-CCCCAAAACCTGGAGACTCAGGAATGGACAGTGCCCCAGTCCTCCAGAGCTCAGACCTTAGCTATGAATATCAGAAATTTCTGGGATGAAGATGCCACACAGGCCAAGACACTTTCACCCTGTGATGGCAGACCGTCTGCAGAAACTACAGTAACATCTCGAATCCTAGGAGGGCATCAGGAGAACAGGTACCGACCCT--GGGCAGGGGCTTTCCTCTCCCCCAT-TTCACTAGAGTCACTCCCCTGCCAGCTCTGTCCTGGGAAACCCTCTCTGTGCTATGGATGCAGGCGTTTCCTGTTGGCGTACTGTGTCCTGACTTTCCTCTCTTGTTAGAGCCACTGGATAAAGACAGTGGGTTGGG-----GACTGAACCATCCAGTGTT-GTAATCTGGGAAAGCAATGCTCCACTCCCAACAGAATCCTCACCCTG---GGGTGGGTGTTAGGCAGGAGAGGAAGCCCTCAGGGCTAGGGCTGCCCCCTCTGCCTCCCAGCCTGCCCATCCCAGAGAGTTCCCTCCTGG--CCTCATGACCCAGGAGTCCAACCCTGACATCCCTCCCCTTCAGCATCAATGCGGGGATCTCAGAGCCTGAGGCCATAGTCTGAGGCCCATCCTCCTGCCAGCCCAAAGGAATTGGGCCCCAGGGTA-AGGACAGACTTGCAAAAGGTCCGGGGTCCATGAGGGCTTCAGCCAGAGTAAGAACACTGGAGAGGAGCAGCCCTGTTCCCTGAGTCTCCCTTAGAGG-GAGCGGGGCTTGGCCATGTGCCTCACTGGCTCTGCCCTTTCCTATCCAGTGCCTACCATGGTGAAT----------GCCAGGCCTCAGAGAACAAAGTCACCCCCACATGCTGGGCTTCCGGCTTCTATCCCCAGAATATCTCTCTGGCCTGTTGTCAGGTTGGGGCATTTTCTGAGCCAGGATGCCCATCGGTCTGTGGGTGTCCTGCCCAATGGGAATGGGACCTACCAGACCTGGGTGGCCACTAAGATTCCCCAAGAAGAGGAGCAGAGGGCTACCTGCTATGTGGGACACAGCAGGAATCACAGCACTTACCCTG-GTGTCCTCTGGTGAGCCTGGGGTGACCCTC---AAGTGTTCTGACCTAGAAAGGGTCAGG--CCAAGGTGGGCACAGCAGAG-ATAACTGGAACTCTGAGT-GCCCAGTGTGCAACAAGGCCCTTTTTTTCAGGGAAAGCCCTGATGCTTCAGAGTCTATGGCAACCATTCCGTATGTTGCGGCTGCTGCTTTTTTTGTTATCATTATTATTATTCTCTGTGTCCTTTGGTGCAAGAAGAAAATAT------CAGCTGCAGAGGACCCAGGTGAAAAAAGGGGGCAGTGGCTGGAGATGGGAGGGACCCTGTCTGGGCAGTAGGGTCCCCTCATAGCTC---CTGCACAGACAGGCATGTAGATGACAAGGCTTTGGAACAGGGTTTGGAAGTTGGGGTATTTGGGAGGGGAATAGGAGCTACAATTTCATCTAGACCCCTAAGTCCTGCCCAAGCCAGGGCCGGGCCAAGGCCCTCGAATGTCCATCTGTGGCCTCCTCTTGCTGCAGGTGAGGAGTGGGCAGCAAGGAGGGCCGTGGC-ACCTGCTCTGTCCTCATCCCCATCCCTCTGT-CTCTCAGGCTCACCAG-----CGTGCATCAGGGTGGGGTGAGCTGGGAATCATGTGCTGATTGCTGAGGGCCTGGATGATGATGGCTTCAGAGGGG-GCAAATAGTAAAGACGGCTATGATCTGGGGAGG--GCTAGAAACTGGAGAGGAATAT-GAGGAGAGGTGGTGCCTCTAGTCCCTTCCTCTCTGCATCCCCCTCCCCTATTTCTCCAGCCATCAGGAGGA----------------CAC s canFam2.chr12 3966528 2399 + 75515492 TCAGGCAGTTCAGGACAGCAGAGCTTTTCAGAGAAGGATCT--GTTATGTTGTTCCTTCCAGGTTACTTCATCTGTGATCTACTCCCTCCCCAGATTCCCGCAGTCTTTCTTATAACCTCACAGTGGAGTCC-AAGATGGATGTGTATCG--GAGATTTTTCACTGAGGGACACTTGGATGATCAAGCCTTCCTCCACCTTGACATGGTAGA--------------GCCACAGGGACTGTGGGCAGAAGCAGTCCCGGG-TCTGAGACGCAGAACACAGAGGCCAAGGACTTGAGAGAGACTGGAAACAGCCTCAGAATGAGTCTGACAGGTGTCCTGGCCCTGTAGGCACAGGCAAGGTGAGAGTGGGGTCAGAGCAAGAGTGATGGTAG--GACTTTCCCAGGGAAGTTCAGGGTAGAGAGCAGAGCCCTGTCTCTTTCC--TGGATTTGGCTGGGGGTGGGGGTGAGGGCTAAAGGTCTGTGGACTTCAGCCT--AAGGGGGCCATTACTGAGCCAGCACAGAGAAGACATAGAGGAGAGGAAGGGGGGCTCTCTGGCTGG----AGTTTGTCACTGGGGCAGGGAAGTCAGAGGGACACAGGGTGGGAGAAGTCACTGCTGGCTGGAGGCAGGCTTGCATTCCCTGCAGGAGATATGGGGCT-CAAGATCTCAGAAGACGACAGCACCAGGAGCTTTGGGCATTTCTGCCATGATGGGGAGCTCTTCCTCTCTTTATGACCTGAAGACCCGTGGATGGACTGTTCCCCCATCCTC---AGCT-GGACCGCGATCATGGAAATCAAGAAGTCCTGGGATG---------------------------CAACCTG-AATGG-------------------------GCTTCTTGGAC-----------------AGGTCAGGCA-TGACCCCCGGGGAAGGAGCCTTCTTCTTCCCCAGACTCACT-GAGC--CTCCCCCAGCAGTCCTGTCCTATG------------------GGATGCGCACATGTTCTGTTGGCACATTGTATTGAGATCCGCCTGTCCTGTTACAGTCTCTAGAGACACCGAGCAGGTTGGGATGGAAATGAAATCTTCCAGTGTTAATAGTCCAGG-GAGCAGTGGGC--TTTCCTACGTAGAACTCAACCAGAGAAGGCAGGTGTCA-GCAAGAGAGGAAG------------------------------TTCAGTCTCCCTGTCACAAAGAGTTTCCTTTAGAGTCCCCTCAGCCGAAGAGCCCACCCTC--CATGCCCCCTCGTCAGCAGTAACACATGCATCCAAGA----GATCCCA---TTCCTGGCCCATCCTCCTGCCCGGGCTAAGGACCTGGGTCCCAGGGTGCAGAACAGACTTGGAGCAGGTCTGGGGTCAGTGAGGGCTTCAGCCAGAGGTGGAAAGTGGGAGA--AGCAGCCTTTCTCTCT--GTCTTTTGTGGAGGTGAGCAGGGCTCAGCCATGGACCTCACCAGCTCTGTGCCTTCTTCCTCAGTGCCCCCAACAGTGAACATGCTCTGCAGCCAGGCCTTGGAAGGCATGATCCCTCTGACATGCTGGGCTTTCAGTTTCTCTCCCAGGAATACCTCCCTGACCTGGCTTCAGGATGGG--AACCCCTGAGCAAAGATTACCAGTAGTGTCGGG-----------AATGGGAC--GGACCTACTGGACAGGAGGGGCCATAAAG---TCTCAAGGAGAGGAGCAAAGGTTCACCTGCCAGATGGAAGACACAAGGAACCACACTG--TACACTGTGTGCCCTCAAGTGAGCCTGGGGTGATCCGTGGAGGGGGTTCTGACCCTGGTTGAGTTAGGAACCAGGGTCGGGAGAGGAGAGCAGGCCTGTATCCTTGAGGAGCCCAGGTCACTATAAGGCCC--TTTTCCAGGAAAGGCCCCAGTGCCCCGGAGTGGATGGACAGCTACCTGCCTGCTGCTGCTCCTGCTGATTTTCTTACTGTCATCATTGCAC---GTGTTTTTTTCTCCAAGAACAAGATACCACCAGCAGCTGTGGAAG-CCCAGATAAGAATTCTGGGCAGTGGGTAG-GGTTGGAGGGGCTCT-CCTAGGACGTGGGG-CACTTTATGTCTCCCTCTGCACAGATCAGA--GGGGATGAAAAGCTTCTGTAACAGGAGCTGGAAGTCAGAG-AGCTGAGAGGGG-CTGGGAGCCACATCTGCATCTACATCCTT-AGCCCTG---------GGTCC---CCAGGGCCCTTGAGTGGTGAG-TGTGGCCTCTCCTTGCTCTGGGTGAGGATTGGGCAGTAGGGA---CTGGGGCTCCCTGCTCTGAGTTTGTCCCTACCTCTCTCTACTCTCAGGCTCGGCAGGACTCTCTGTCTGGAGGTAATGTG---TGGGGACCATGTGTTGACTGGGGAGGGCCCAGGTGATCGTGGGACCAGAGAGGCACAAGCAGTAAAGG-GTCCAAGACCTAGTGGGGAAGTTTAACACTGGGCAAGAATCCAGACCAGAAGTAATGATTCTATTTCCTTCCTGTCCACA---CCTGTTCCAATATCTTCGGCCATCATGAGGAATCAAAGAAAAGGACTCAC a score=16096 s hg19.chr6_ssto_hap7 1714898 506 + 4928567 CAAGAAAAAGACCTATGAGGCC--------CAGACTGGGGGG-----------CCTGCCTGTG-CAGCCCCTTGGAGACCCCCTTGTAACAGGGAGGG-----TCCTGAGTGCACACAGCCATCTTT-GTCCACTTTGTAGCTCCCCACGCGCCTCCTCCAGGAGCTGTCTCGGGGGTGTCGTGTCTC-CTGGATCACTCGAGGCCATGCTCTTTCCAGGTTCCCACCACATGGCCC--TGCACCCT-GAGTTCCCTTGCAGATAATATGGATGAGT-------AGA-----------TATGCAGATGTCTCTGGGCCATTTGGGGAGTGGGGACCAGCCCCTTGTCAGGGAAGCTGTCATCCCTGTTTTCATCCTACTTCTA-GGTGTTTCCTTGTCCAGGCCCTGAAGGACACAGTCCCTCAGGGACACAGTGCTCAGGGACCATGTTTTTTGGGCTTTGT-TCTGTGCTC-TGTGGCCTCACCTTGCCCTCCCTGAG-------CCTTTCTCAAGGTGGTCACTTTCCTGTAAATTTGGAGTAAAGGATGGTCAGGATGAT s canFam2.chr12 3969145 542 + 75515492 aaagaaaAGGACTCACAAGGCCCCATGTGGCAGCCAGGAGAGCATGCCAGAGTCCTGCCTGTGACGTCCCCTTGGGAAGTTCCACTCACAAGGCATAGATGCATCCTGAGCATAGATGGTCACCTTTGGTCCACTTTGTAGCCCCTCGAATGGCTCCTCCAGGACCTGTCTCCCGAGT----TGTTCCACTGGGTCACTCCCACCTGTGCTCTTTCCTGGTTCCCATCATATGCCCCCATGCTTCCTGGAGTTTTCTTGTGGATCATATGCAAGAGTCTCAGGGAGACTCTGGGGGTGTGAGCAGATAACCCTTGATCATTTGGGTAGAGAGGGTCAGTCCATTCTCAGGGCTGCTGTGGCCACTGCTTTTATCCTGCCTCCCTGATGTGTCC-TGTCCAGGCCCT-CAGGGCACAGT--CTAAGAAAC----TACTTAGGG----------CAGGGCATTCTGTCTGTACCCTTGTGGCCTCACTCTGCCCTCCCTGAGCCGGTTCCCTTTCTTGTGCTGCTCACTGCCCTGTAGATTTGGAGGAAGGGATGGTCAGAATGAT a score=4534 s hg19.chr6_ssto_hap7 1715404 205 + 4928567 TTCCCCCACAGTCA-GTTGTTTGAGGGGAGAGTAAAAGAGAAAACAGGAAGTTTTGTGTTTCTGCAAAGACAGAGGCAGTGCAGGGGATAGTGAGAGGCTGGGTGTCCAGGAAACTGGAGTCTTTCTGCC-ATTTCCCCACTTTT--TTGCACCTGGTGGTGGGGGTGGGGGTTTTTCATCCTTAAACCTAATTGCACTGTCTGTTGGC s canFam2.chr12 3969842 207 + 75515492 TTTCTGTGTAATCAGGCTGGTTGAGGGGAGGTGAAAACAGAAAG-ATGGAGTTTTGTGTTTGGGCAAAAAACAAGGTGATGCATGGGACAGGGAAAGAATGGGGTGTGTGGGGCCTGGGGTCCTTCAGTTGATTCTACCACTGCTGGGTGACCATCATGGCAGGCAT-CGGATTTCTCACTCTGGAACCTAATCTACTTATAAGCTGGC a score=30795 s hg19.chr6_ssto_hap7 1715609 1408 + 4928567 CCCTCAGTCCTGGGCAGA-TGGGAAGGTTCATCCCCTGCCCTGCAGCAAGAGGGCCCCGTCCAGGAGGCACCCACAGC-AGGGGCAGTGCAGGTTTGTGGTCGCTCCTGCTTTCACCTGCACTGTCTCTTATAGAGGGGTTGTCACTTCTGGGTCCCCGTGGGCAGGAAAGTTTGCCTTGTAGGTCA-CGGGGCATTGGCCAGGGAAAGGGTGTGAAAGTCATGTGCTAATTTCTCAAAAATTCTCCTTTAAATGTTGATGTCCAATAAAGATGTTCACAATTTCCGCTGGATAATCTTAATAGGATTTCCTCTAATATTGATGTTGTAAAGCATGTACAATCAAATGAGAAGTCAAACTTGGAGC---TTCCTCTCCAGGAGGG-TCCATTTTGGAGATGGT-----GGTTGTGGCAGTGGCAATCCTGGAGTGCAGAGGGTGGGTGGAGGCAGCCTCAGGCTGAGGGGTCTCCAGAAACCCCCTGCTCCACAGGGAGAAGAAGA-------AGATTCCCTGTGGGCTGTGAGGGCAGTGGCCTGGGTGGAAGCCCTGCTAGGAACAGGGCAGGAAGGTCTT-GCAGCCTCAGCC-AGCAGCAGCCCTGGGGTGGAGGTGCATTTCCAGGGGTGAGTGGACCAGGCAGGAGCAAGGATGGCCCAAGTGCAGGTCACGGACCTGGGT--GGGTGCTGAGTGTCTGGAAAGGTTGGGTGTCCTCAAGCGTGGAGGGTCCCAGGATCCAGTCAGGTGCAGACCCGGTGGCAG-CCACGTGTTTTTG--------TGCCGAGCCCCCGGGCTTCTTGATGGGCTCTGCAGTTAGGGGCTGGCTGCTCAGGGCTC-GGAGGGTGGAACGCTG-AGCTGCAGGTGGAGCGGGGAGCCCAGTGTGCAGGGT-----GTGCCCTGTTGTGCAAGTGCCTCTGTAGGTGAGGAGGGCCTGGGGACTGAGAGGGAGAAGGACCGCGTGCGTGACCCAGCCCAGGCCTGGTAGGACACGGAGCTAGGACCAGTCCTCTCTTTGGGGAGGTTTCCCACTGTGTCTAGGCTGGTGGGGCTTGGGAGGAGGGGAGGGCCCCGGGTTCC--CTCCTGGATCTGATTCTTGTCCTTTAGTCATGAGGCCCTTTCATTC-CCCACATGGTGGATGGTGGGCACAGGG-CAGGTATCATTGTTGAGGGAATCACAG-GAGGAGACTGGTGGAGGCTGGAGAAACTAGGATGGGAGGGAGGAAAAAGTGGGGGCGTCAGTTCTTCCCTCAGAGAAAGGGTGAATCTGATTTCGGAGTGACTGAGGAGGGAGAAATCCTCAGGGAATGAAAAGCAGCACTCTGCACCCAGTGGAGCATTTACTGTTTCTCTCTTTTCTCCAGAG-CACATGAGCCTACAAAGCCCAGATCAACACCTGGTTGGGACAGGAGACCACCAGGGCACCATACAGC s canFam2.chr12 3970235 1369 + 75515492 CCTTTGGTCTTAGGCAGACTGGGATGATTAGTCCCCTGCCCCACACTGAG-GGGCTGAGACCAGGTCACAACTAGAGCAAAGAGCCATGCAGGTCTGCAGATGTTCCTGTTGTTCTCTGGGGTGGCCCTCCCAGAGGGAACACCAGTTTTGATTCCTTA-GGGTAGAAATGATTGCCTCATATATCATTGAGGCATTTACTGGAGAAAGAATACAAAAGTCATGTGTCAATTTCTC-AAATTCCTGCTTTAAATTGTGATGTCCAAAACAAATT------ATTTCAGAAAACGAATTTTAATAGGATTTCTTCAGATCCTGAGCTAGCTTAGTGCGTGAAATATATCAGGAATTCAACCAGAGGGAGGGCTCTTGTCTGGGAGGGTTCCATGTGGGAGGTGGGAGAGAGGTGGTGGCAATGGCAGTCTCAGGGTTCAGAAGATGGAC--AGATAGCCTCAGGCTT-GGGGTCTCAAG-AACCCCCTCTACCTCATTTAGAAGAAGACTGCAACAGGTTCTCCTTGCATTGCCTGGTTAGT--------------CCCTGCTAGGATTGGGGCCAGAAGGCCCTGGCAGCCTCAGCCAAGCTGCA--CTTGGGGAGGAGCTGTGATTCCAGGTGCAGGTGGGCCAAGAAGGAGCACCGAAGG-CCAAGTGCAGCCTGGCCGCCTGGGTCAGGGTGA-GGGTGGAGGGCAAGGACAGGCCTCTGTGAGCATGGGGTGCTCCTGAGTCAGGTCAAATACAGACCCCACTGTAGTCCACTTCTTCTAGACTGTGACTGGTGGTCACCTGAGCACTCTGATGAGCCTTCCAGTTAGGAGCTGCTGGCTTAGGGCTAGGGAAGGAAGGAGGCTGAAGCTGCAGGT--------GAGGTCAGTGCTTGTGGTTGAGAGGTCTCTG-TGCTCAGGTGTTTATGCAAAT---GAGAGCCT---GACAGATAGAGAAGAAG-CAGTGTTTGTAACCACTGTCTGGCCTGGAGGAACAGGCCACAGGGACATG---TCTCTCAGGGGCCATGTTCT-CTGTCAGTGGACAGTTGGGACC---------AAGAAGGCATTGAGTTTCTGCTCCAGGGTGTTGTCCTTG-------GTCCTGGGACCCTTTCCTGCTCCTGTCCAGTAGATGGTGGAGGCAGGGCCAGCTAGTGATGCTGA-GGCATCACAGTGGGGAGGGCAGCAAGGGCTGGTAAA---GGGGTGAGAGAGAGATAACAGCAAGGGTTTA---TCCTCCTTCAGAGAAAGTCAGAG-CTGAATTTGGAGTAACTGA------AGAAGTTCTGAGCAAGTGCAAAACAATATTTTGCACAAATTGG---GCTCTATGGGTTTCTCTTTTCCCCAAAATCTTGGTAGCCTTCAAGACCTGGATCAACACCAGGTAGCACCAACAAGCCATGATGGCAGCAACCAGC a score=25996 s hg19.chr6_ssto_hap7 1747274 945 + 4928567 GGCCACCTGCCCCCAGGACAAGCCCTTGGCACTGAGTCTACTGAAATGTGGGCAGGGAGAAGAGGAGGCCTTCGGACCTTTTACCTGAGCAGCCTGGTTTACTCTAGGCTCTGTCTTGTTTCCTGTCCAGAGATTAATGTAACAAACTGTCTCCAAATTCATCCAAGGGAGTGGAGTTCCTTCCCGTACTCCCGATC-CCCCTCAACACCATCCTTTC-TGGAAGTGTTATTCTGAACAT-GTTCTCGGATTTGTTTTTATCAGTGGAGAAAGAGAGGATAGAAGAGCA-CTCACCCAGCAGAGCCAGAGGGAGGCAGCTCCAAGGACTCCAGTGGCCACCAGAGCCCACCAGGACCCAGGGCTGG--AGGTGCAT---AGTGAGATCCTCAGTGCAGAGGGAGAAATCTCCTAAGGGTAGGAAGGAATAA-CAGAATTGGGGAGCATTTCCTTACTTCACAGCAAGTGCAAACATGATGGGAAGGCATAGAGAAAAAGGAAGAAATTAT-----------AGGGAAATGTGCTTATT---------TAGGGGGAGGC----AATACTGCGGGAGGGGTACAACAGACCCAGCACTGGTGGGGGCTAGGAGAAACAGGTATAATCCTTGACTAGAGAATGGATACTTGAGG--TCAGAATAGTTACTAAATGAAGAGGATTACATACATTTTAAGGACGTTGATTTACGTTATACTTTGTCATTGGAATTTAAGGGAAAAGAAAGGAAATTAATAAATAAAAACAGGCTGCATGTGGTAAAATCAATAGTCAGCCCTGGGACTTGTGTTTGCAAAATGCTTTATCCAGGTGCGACACCGCTGATGTCC---TGGATTCCCCACCCTCTAGCACCCAGTTCCCTCTCCTGTAATGAGAC-CGGGGTCAGGAGGAGAGATGGACAGGTGAGCCCATG----CTGAAGGCAGTCAGTCATCTGTGCCTGCAGATGAGAAACTGCAGTTTGCA s canFam2.chr12 3348371 923 + 75515492 GGTCACCAACAGTCAGGGCAAGCAAG-GTCACTGAGACTGCTGCAATTCAGAGAGGGGCAAGAGGAG-TTTCCAACTCTTTGACCTGAGCAGGTTGGCATACTCTCGTCTCCCTTGTGGCTCCTTTCCTGGGATTAATATGGCAGGTTGCTTCTAAATTCTTCCACTTGAGTGGAATTCCTTTCCCAACTTCTTAACATTCCTCACCACCACTATCTCATCAAAATTATGTACTACACATTGTTCACGGATT-GTTTTCGCCAGCTGA-AAAGAGAGGCTAGAAGGGGAGTTTACCCAGCACAGCCAGAGGGAAGCAGCTCCAAGCACTCCTGTGGTCACCAGAGCCCACCACAACCCAGGGCTTGCCAGGTACAGTGAAATGAAATTTTCTGCTCCAAGGGAGAAATCCCCTGTGGACAGGAAAGCAAAATCAGAATTGAGAAGCTATTCCTTATTTCACAGAGAGTGCAAACACAACGGAAAAGCATAGAGCAAAGGAAAGCAATTATTACCACAGAAGATGGAACCACGCTCAGCAGCAGGGGATGTGGGGAGGCAAAGAAGATTACCATAGGCGAAGAGCACTCAGAGCTTTACTGCGCGCTGGCTGA---GGTTATAACTCCTGACTAGAAAGTGGGTACTGGAAGATCCAGTATGGTTACTAAATGAA---GATTACATGCATGTT-----CATCTATTTA---TATATCT--------------------------------TTAAAAAACAAACTGAGG-----TGTGGTGGAATGAAAAGTCAGCTCTGAGTCCTGCAGTTTCAAA---TCCTATTCAGCTACTGGCCCTGTGACCACCCAGTGGATGCAGGACCCTCTTACACTTAGTTTCCTCTCCAGTAATGAGACTCAAGGACAAAAAG-GTGGTGGAGAATT---CCCTTGAGCTTTTAAGCC---CAGTCACCTGAACTTAGAGACAAGAAACC-CAGTCTaaa a score=2781 s hg19.chr6_ssto_hap7 1748219 235 + 4928567 CCA--CTAGCCTC-------------------CAGC--ACAGAGATTCCATCCCAGCTCAGTATTTAGTATTTAGAGATGTAGTATTTAGTATTTAGAGATTCCTAAACACTGAGGGCTCTGCCCAGTC---------------TCCTTCCTCACACTGTGGGGCCTTGGCTTT--CCCTCCCAACTCCACACCCCCAAATGCTGGTACAATGCTCAGGTTCATCCTGGACACCGCTCCATCCGACAGGGGAACACTTTTGATCCAGCCGCTTTG s canFam2.chr12 3349535 242 + 75515492 CCAGTCTAGCCTCATAGGGCCTCTAAAAAAAACAGTAAACACAGTTTCCACACCAGCTCAG------GT----------------TTTCACACCTTGAGATCCCCAAATGC-GAGAGCTGAGCCCTATCATAGTCTGGTCATGATCTTCCCCCTGAACTTGCGACCCCAGTTTTCCCCCTCCTTGTTCCAGTTCTCCATG-------ACCAGGTTCAGATTCATCATAGGCACTGCTCCGTCCGACAGTGCTGAATCTGGGGTCCG---GCTTTG a score=9851 s hg19.chr6_ssto_hap7 1748713 782 + 4928567 TGAAACAGCAAAGCGCTGAAACAGCAAACCGCAGGCATAACAGAA--AAACCTCAACTTAAATAGTGCTGAGCTGCAACTTGTTTTCCGCGGCTTGTA-GTCGAGGAGGAGCCCACGAGGCTTTAGCTGCTGCAAGATCCAAGCGCGCTCCCGCCCAGCGGTGGCCCCAGGCTCAGGGAACAAG-----CGCTGCTTCTCTC----------CGAGGCTCGCGGCCTGAGAAACCTTCC--------------------------GCTCCGAATGCGGGCTGGCCTCTCCGGGAAGCCTTGAAACTCAA-CTCCCGGGTGGGCCAGGAAGGTTGTCCGAGTTGGGCAGCGCCGGCCGGAGCCTTCTTCAAAGCCGAGCTGCTCGCCTCCC-TCGAGGCCCAG---------CGCAGCCTGGAGGAG---AGACCGGGTCCT--CTCAGGTGGGGCCCTTGGTGACTGGCGACCCCATGAGCACCCACCCTCCAGCCTGGGGCGGGATAGCCCAATCGGATGCTGGGGGGTCCGTTTGGAAACCACTCTCTGCTTTGAGAACACGCGCGGAGCTTCCCTGGGAG---CAGGAGGCTCTGAAGGAAGAGGGGCAGACGCGAAGCCTCTGGCCAGCCGCGCCTCCGGTCCAGGCCTCCCTGTGTCCACATCAGGTCTCCCGGCTCTTCACAACAGTGACCTTGACAGCGCCGAGAGTCCGCGGCTTCCATCCAGTCC------CCTCTTCCCCTGCGTGGCCGAGAGGGTGCAGAGCTGGTGGCTTCAGGAGGTGGCTGTGAGCGCGGGTCTGGGGC-CAAGAGCAGAGGACAGGAGAAGACTGCCAAGCCACCA s canFam2.chr12 3349891 796 + 75515492 TGGTTCGGCAAACCGCAGCCTCGGCACAAGAAGGCCACAAGAAGGCCGAGCCTCAACTAGGTTAAGGCTAC----CCACTTGGTTTCAGCAGTTAGCAGGGAGAAGGGGGAGAGAAGAGAGGTTAGCC----CAGGGGGCTCGTGAGCT------------TTGCCCTGGGTTCTGGCAACAGGGCTCCTGCTCCTTCTCGCCCCAACAGTGCGAGGCTGCTG--CTGAGCAACCCTTCCTTGGACCCCGAGGTGCTCAATTCTGGCTCCAAATCTGGGCTGACCACTCGGGAAAGCCTGGAAACTAAGTCAACCAGGTTGAAAAGGAAGGCGGTGGGAACT-AGCAGGACTGGCTAGCTGCTCCCGGAGAGCCGAGGCCCTTGCAGCCCGTAGAAGCCCAGGCAGAAGGAGGCGGGCAGTGGGGGGCTGGGCAGGGACGTGGCCAAGGCAGGGGGCGGGGGGG--GGGGATCCTCCACTCCCCCATCCTCTGCCTTGGGGCATGCAGGCCCTTTCAGGGATTGGGAA---------------ACTCCGGGCTTTGGGGATGCACACCAGGCTTCGCCCAGAGATTCAGCA--CCGCGCAGGAAGA--GGCGGACA-GGGGCCTCT---------TATAGCAGGTCCCAACCTCCCAATTTCCATATCTGGTCTCCTGGCTTTTCAAAATAGCGAACTTGAAAGGACCGGGTTTCTGCCACTGGCGTCCAGCCCCTCTTGCCGCTTCACCGGAGTG--TGAGGGCTCACAGAGCTGGCGGCCGCAGGGTGTGGGCAGGGGCTCGGAGGAGGAGCTCGGGCCCAGAGGACAAGAAAATGGTGGCCCGTCTGCA a score=4411 s hg19.chr6_ssto_hap7 1749542 252 + 4928567 CAGATTCGGGTTTGCCCAGCAGGCGCTCGGCGTCCATGCTCGCTCTCCACCTCCCTGCCTCTCTTAAGGAGGACCTGGCCCATTAGGAAGCC---CGGGGCGTTCTGTGGACTGGGTGGTCAAAAA---TGGTGTGTGGAGGAGGGAGTCAATTGAGATTAGACGTGAAAAACGGGGAACCTGGGGACTGCAGGTTGGGGCCCAGGAGAGGACCGAAGCTTCCATCCAAGACTAAGTGAGGAACACTGCGGCAAGAGG s canFam2.chr12 3350860 230 + 75515492 CAGTGTTTGGTACTGCCAGCAGGTGCTC------------TCCTTCCCCCTTTCCTCTCCCTCCT--------CCTGACCAGCCAGGAACCTAGACGACGAGACCTTTAGA--GAGTAGTCAAAAAAAGAAGTGTGTGCGTGTAGGA--CGGCTGAGGTTAGACGTGAAGAGCGGGAAA-CTGGGGAGCACAGGTTGGGGACCAGGTGGGGATGGGAAGTCCGCCCC---CCCACGCGGCCCGCTCTTTGGCAAAGGG a score=12935 s hg19.chr6_ssto_hap7 1749815 750 + 4928567 GACTTGTGGATTTTATCGGTTTTAGTCCCTGTGTGACCGCCAGAAG-TCTGCAGCTTTATCCTTGGTGAGTTCTGAAGGCCCCTGAGG-AGAGCTGAGCCCAAGATACTTTTTAATTCCACGGAGGTA---CTTCGCCTGAGGCAGGTCTCCTCTGTGCCCAGGGAAGGAAGGCTGGGAGTGAGGGTAT--CTGAAAATATTCACAT-GAGAAAAGGTCAAGTCCATTTTTGCTATCCTGTACTGAACACAGATCAATTAACTGGTCCCAGGATTGATAGCAACAGGCCTATAACTGGTCTCCTGG-TTCCTATCCAGCCCTTCCCCCATAAAG-TCAGAATCCTGTCTTCTTGCAACAGTGA---ATCCCCAGCAGAGGACCTCAG--CCTGGGCTGCCTG-----------------GAACCTGCTACCCTGCCCA--GGAGCTGTCAACACCTGGAGTGCAGTGCAGGAAGAATGCAGGGGCGCTTGGTGGGGAGGTGAGTGAGTGCAGAGGGTTTCCGGGAACTCCTTGGGCCTTTGGGGTAGCTCCCTCTCAGGCTGTCCTGCAGGTCCTTACAAGGCCCACTACTGAGCAGGCCGAATGTCCCCAGGAGAGGCAAGGGGTGGGGCAAAGGCGGGTATGGGGTCGCTTGCACTTTGCAGC-AAACTGGAGAGTGAGATGACAGGCAAGGAGTACTGGCCCTCACATGGAAACCTACAGCACACTGCCCAAAGGGAATAGGAAAGGAACCACAGCGAGGTCCACAGGGGAGGGCTGGGGGG s canFam2.chr12 3351137 725 + 75515492 GACGTGGAGGTGCAGTCAGTTTGATCCCGCATCTGATAGGCTGAAGATCCGCAGCTCTGTCCTGGGTGAGTTCTGGCCACTCCGGGGATAGAGACGAGTCCAAGATACTTTTTTATTTCTCTGGAGGAGAGAAACACATGGGGCGGACCGCCTCTGCTCTCAGGCAAGGGAGGCTGGT-GTGAGGATGTCACTGAAAATAGTTCTACGGAGATAAAGTCGAATTCACTTCTGTTGTCCCCTAGTGAGTACA------------GGTCCCAAGGGAGACGGTGCCCGGACTAACACTGGTCTCCTGGATTCCTACCCAGTGCCT-CCCCATAAAGCCCGGGCTCCCGTCCTCTTGGAAAACAAAGCCAACCGCAGCAGAGGATCCCGGTCCCCAGGCTTCCGAGTGGCCCTGGTGTGCGCGCACCCGCCACACCGCGGGGCGGAGGGGCTAGAACCCCAG--CCGGTGCGGGTCGGA-GCTCAGACACCCGAGTTCAGGGCGA-CGGGTGCGCAGGGTACC--GGAGCTGACCCGGCCACCGGG-------------CGGCGGTGTTCCCAGTGTTCCCGGG----------CAGCAAGGCGCAT---CCCAGGGAGGGT--GGGGGAGAGCGCGGGCGGCTGCGAGGTCGCCCCGACTTTGCTGCAAAACCGCGGAGGGAGATGAGGGGCGAGCAACAGTGACGGTCG-ATGGAAACCTAGTCCTCGCTGCC-----------ACAAAGGAACGACTGCGTTGGCGACAACTCGGGGCTTTGGGG a score=27005 s hg19.chr6_ssto_hap7 1759852 946 + 4928567 GGCCACCTGTCCCCAGGACAAGCCCTTGGCACTGAGTCTACTGAAATGTGAGGAGGGAGAAGAGGAGGCCTTCAGATATTTGACCTGAGCAGCCTGGCTTACTCTAGACTCTGTCTTGGCTCCTGGCCAGAGATTAATGTAGCAAATTGTCTCTAAATTCATCCAAGGGAGTGGAGTTCCTTCCCCTACTCCTTA----TCCCCTTCCACACCATCCTTTCTGGAAGTGTTATTGTGAACA-TGTTCTCGGATTTGTTTTTATCAGTGGAGAAACAGAAGACAGAAGAGCA-CTCACCCAGCAGAGCCAGAGGGAGGCAGTTCCAAAGACTCCAGTGGCCACCAGAGCCCACCAGGACCCAGGGCTGG--AGGTGCA---CAGTGAGATCCTCAGCGCAGAGGGAGAAATCTCCTAAGAGTAGGAAGGAATAA-CAGAATTAGGAAGCGTTTCCTTACTTCACAGTGAGTGCAAACATGATGGGAAGGCATAGAGAAAAAGTAAGAAATTAT-----------AGGGAAACGTGCTTATT---------TAGGGGGAGGCGA-------TACTGCGGGAGGGGTACAC-CAGACCCAGCACTGCCGTGGGGTAGGAGAAACAGGTATAACCCTTGACTAGAGAATGGATACTTGAGGAT-CAGTATAGTCACTAGATGAAGAGGACTACATACATTTTAAGGACATTGATGTACATTATAGTGTATCATTGGAAGTTAAGGGAAAAGAAAAGAAACTTCATAAATAAAAACAGGCTGC-ATGTGGTAAAATCAATAATCAGCCCTGGGACTTGTGTTTTCAAAACGCTTTATCCAGGTGTGACACCTCTGACATCC---TGGATTCCCCACCCTCTAGCACCCAGTTCCCTCTCCTGTAATGAGAC-CAGGGTCAGGAGGAGAGATGGACAGATGGGCCCATG----CTGAAGGCAGTCAGTCACCTGTGCCTGCAGATGAGAAACCGCCGCCTAA s canFam2.chr12 3348371 922 + 75515492 GGTCACCAACAGTCAGGGCAAGCAAG-GTCACTGAGACTGCTGCAATTCAGAGAGGGGCAAGAGGAG-TTTCCAACTCTTTGACCTGAGCAGGTTGGCATACTCTCGTCTCCCTTGTGGCTCCTTTCCTGGGATTAATATGGCAGGTTGCTTCTAAATTCTTCCACTTGAGTGGAATTCCTTTCCCAACTTCTTAACATTCCTCACCACCACTATCTCATC--AAAATTATGTACTACACATTGTTCACGGA-TTGTTTTCGCCAGCTGA-AAAGAGAGGCTAGAAGGGGAGTTTACCCAGCACAGCCAGAGGGAAGCAGCTCCAAGCACTCCTGTGGTCACCAGAGCCCACCACAACCCAGGGCTTGCCAGGTACAGTGAAATGAAATTTTCTGCTCCAAGGGAGAAATCCCCTGTGGACAGGAAAGCAAAATCAGAATTGAGAAGCTATTCCTTATTTCACAGAGAGTGCAAACACAACGGAAAAGCATAGAGCAAAGGAAAGCAATTATTACCACAGAAGATGGAACCACGCTCAGCAGCAGGGGATGTGGGGAGGCAAAGAAGATTACCATAGGCGAAGAGCACTCAG----AGCTTTACTGCGCGCTGGCTGA---GGTTATAACTCCTGACTAGAAAGTGGGTACTGGAAGATCCAGTATGGTTACTAAATGAA---GATTACATGCATGTT-----CATCTATTTA--------TATATCTTTA----------------------------------AAAAACAAACTGAGGTGTGGTGGAATGAAAAGTCAGCTCTGAGTCCTGCAGTTTCAAATC---CTATTCAGCTACTGGCCCTGTGACCACCCAGTGGATGCAGGACCCTCTTACACTTAGTTTCCTCTCCAGTAATGAGACTCAAGGACAAAAAG-GTGGTGGAGAATT---CCCTTGAGCTTTTAAGCC---CAGTCACCTGAACTTAGAGACAAGAAACC-CAGTCTaa a score=8820 s hg19.chr6_ssto_hap7 1760798 1412 + 4928567 CCTTTCTGAACCTCATGCGG-----AAAAAATGTTTGCACCAGTAGCCTCCAGCACAGAGATTCCATCCCAGCTCagtatttagtatttagagatttagtatttagtatttagAGATTCCTAAATACCGAGGACTCTGCCCAGTC-TGGTTTGACCATGCTCCTCCTTCCTCACACTGTGGGGCCCCAGCTTT--CCCTCCCAATTCCACACCCCCAGATGCTGGTACCATGCTCAGGTTCATCGTGGACACCACTCCATCCGACATGGCAACACTTTTGATCCAGCCGCTTTGACAACCTCGTTCAGTCTCCTCTGGAGACAGCCACCCAGACCTTTGCTGATGAGCTGGGACTGAGGGGAAAAGGCCTGCGATCTCTGATGGGGTTGGCAATGGACACCAAAGTCGTCTTCTAAAGACCAAGTACGCTCTAACCACGGAAATCGTCTCTAACCACTGACTCCTCCAGAAAAGGAAGAAAGAAGCCTCTCTACACTAAGCTGAAACACTAAATACACTAAGTGTTGATTAAGTAGACTAGGTACACTAAGTGGTAAACTTGGTAAACTTAGAGCACTAAGTACACTAAGTACAATAAATGGTAAACTTGGTAAACTTAGAGCACTAAGTGCACTAAGTTCACTAAGTAATAATATTAGTACTAAGTGGTACACTAAGCTGAAACCGCAAACCGCAGCCATGGCAGAGGAA--CCTCAG-----------CTTAAATAGTGTGGAGCGGCC--ACTGGTTTCCGCGGCTCGTAGT----CGCGCCCGCGAGGAAACG-----CCAGGGAGGCTTCCTGCCCCGCCCAGCGGTGGCCCAGGGCACAGGGAACCACGGCTGCTTCTCTC----------CGAGGTTTGTGGCCTGAGAAACTCTCC--------------------------GCTGCGAATCTGGGCTGGCCTCTCCGGGAAGCCTTGAAACTCAA-CTCCCGGGTGGGCCAGGAAGGCTGCCCGACTTGGGCAGCGCCGGCCGGAGCCTTCTTCAAAGCCGAGCTGTTCGCCGCCC-TCGAGGCCCAGGC-----GAGCCTGGAGGAGGGACCGGGTGCGCTCAGATGGGGCCC---------TTGGTGACTGGCGACCCCATGAGCACCCACCCTCCAGCCTGGGGCGGGATGGCCCAATCGGGCGCTGTGGGGGTCCGTTTGGAAACCGCTCTCTGCTTTGAGGATACGCGGGGAGCTTC-CCTGGAAGCT---------GTGAAGAGGGGCAGACACGAGGCCTCTGGCCAGCCGCGCCTCGGGTCCAGGCCTCCCTGTGTCCACATCTGGTCTCCCGGCTTTTCACAACAGTGACCTTGACAGCGCCCAGAGTCCGCTGCTTCCGTCCAGTCC------GCTCTTCCCCTACGTGGCCAAGAGGACGCAGCACTGGCGGCTTCAGGAGGTGGCTGTGAGCGCGGGGCTGGGGC-CAAGAGCAGAGGACCAGAGAGGAGTCTCCAAGCCAC s canFam2.chr12 3349535 1151 + 75515492 CCAGTCT-AGCCTCATAGGGCCTCTAAAAAA-------AACAGTAA--------ACACAGTTTCCACACCAGCTCAG------GT----------------TTTCACACCTTGAGATCCCCAAATG-CGAGAGCTGAGCCCTATCATAGTCTGGTCATGATCTTCC--CCCTGAACT-TGCGACCCCAGTTTTCCCCCTCCTTGTTCCAGTTCTCCATG-------ACCAGGTTCAGATTCATCATAGGCACTGCTCCGTCCGACAGTGCTGAATCTGGGGTCCG---GCTTTG----------------TCCGCCGGA----------------CTTG-----GAACTTGGACTAGGGGAAGA-----TGCG------GATAGGGCCTGCGTTGG---------------------GAACATGTGTGCTCT--------------------------------TCCAA-------------------CTCTGCAC-------------------------------------------AGGCTCACCTGCCAGTAAACAAGAGAGACCT-----------------------------------------------------------------------------------------------GTGGTTCG-------------GCAAACCGCAGCCTCGGCACAAGAAGGCCACAAGAAGGCCGAGCCTCAACTAGGTTAAGGCTACCCACTTGGTTTCAGCAGTTAGCAGGGAGAAGGGGGAGAGAAGAGAGGTTAGCCCAGGGGGCTCGTGAGCTTTGCCCTG----GGTTCTGGCAACAGGG--CTCCTGCTCCTTCTCGCCCCAACAGTGCGAGGCTGCTG--CTGAGCAACCCTTCCTTGGACCCCGAGGTGCTCAATTCTGGCTCCAAATCTGGGCTGACCACTCGGGAAAGCCTGGAAACTAAGTCAACCAGGTTGAAAAGGAAGGCGGTGGGAACT-AGCAGGACTGGCTAGCTGCTCCCGGAGAGCCGAGGCCCTTGCAGCCCGTAGAAGCCCAGGCAGAAGGAGGCGGGCAGTGGGG--GGCTGGGCAGGGACGTGGCCAAGGCAGGGGGCGGGGGGGGGGGATCCTCCACTCCCCCATCCTCTGCCTTGGGGCATGCAGGCCCTTTCAGG--------------GATTGGGAA--ACTCCGGGCTTTGGGGATGCACACCAGGCTTCGCCCAGAGATTCAGCACCGCGCAGGAAGAGGCGGACA-GGGGCCTCT---------TATAGCAGGTCCCAACCTCCCAATTTCCATATCTGGTCTCCTGGCTTTTCAAAATAGCGAACTTGAAAGGACCGGGTTTCTGCCACTGGCGTCCAGCCCCTCTTGCCGCTTCACCGGAGTG--TGAGGGCTCACAGAGCTGGCGGCCGCAGGGTGTGGGCAGGGGCTCGGAGGAGGAGCTCGGGCCCAGAGGACAAGAAAATGGTGGCCCGTCTGC a score=4305 s hg19.chr6_ssto_hap7 1762245 207 + 4928567 CCCCAGATTCGGGTTTGCCCAGCAGGCGCTCGGCGTCCACGCTCCCTCTCCACCTTCTTGCCTCTCTAAGGAGGACCTGGCCCACTAGGAAGCCCGGGGCGTTCTGTGAACTGGGTGGTCAAACA---CGGTGTGTGGGGAAGGGGCCAATTGAGATTAGACGTGAAAAACCGGGAACCTGGGGACCGCAGGGTTGGGGCCCAGGAGGGG s canFam2.chr12 3350857 189 + 75515492 CTGCAGTGTTTGGTACTGCCAGCAGGTGCTCTCCTTCCCCCTTTCCTCTCCCTCCTCCTGACCAGCCA---GGAACCTAGACGA----------CGAGACCTTTAGAGA-----GTAGTCAAAAAAAGAAGTGTGTGCGTGTAGGA-CGGCTGAGGTTAGACGTGAAGAG-CGGGAAACTGGGGAGCACA-GGTTGGGGACCAGGTGGGG a score=15504 s hg19.chr6_ssto_hap7 1762527 727 + 4928567 GACTTGTAGGTGTAATCGGTTTTAGTCCCTATTTGACC-ACCAGAGGTCTGCAGCTCTATCCTTGGTGAGTTCTGAAGGCCCCTGGGG-AGAGCTGAGCCCAAGAGACTTTTTAATTCCAC---AGAAGAACTTCGCCTGAGGCAGGTCTCCTCTGTGCCCAGGGAAGGAAGGCTGGACGTGATG--GTTTCTGAAAAAAGTTACACAGAGAAAAGGTCAAGTCCGTTTTTGCTATCCTGTACTGAACACAGATCAATTAACTGGTCCCAGGATTGATAGCAACGGGCCTATAACTGGTCTCCTGG-TTCCTATCCAGCCCTTCCCCCATAAAG-GCAGAATCCTGTCCTCTTGGAACAGTGA---ATCCCCAGCAGAGGACCTCAGCTCCCAAGC-TCCATTCAGCCTGGGCTCCCTGGAACCTGCTACCCTGCCCA--GGAGCTGTCAACACCTGGAGTGCAGTGCAGGAAGAATGCAGGGGCGCTTGA---TGGGGAGGTGAGTGAGTGCAGATGGGGTTCCTGGAACTCCTTGGGCCCTTGGGGTAGCTCCCACTCAGGCTGTCCTGCAGGTCCTCACAAGGCCCACTACTGAGCAGGAAGAATGTCCCCAGGAGAGGCAAGAGGTGGGGCAAGGGCGAGTATGGGGTC-CCTTGCATTTGCGGCAAAA-TGGAGAGGGAGATGAGAGGCAAGGAGTACTGGCCCTCACATGGAAACCTATAGCACACTGCCCAAAGGGAATG s canFam2.chr12 3351137 694 + 75515492 GACGTGGAGGTGCAGTCAGTTTGATCCCGCATCTGATAGGCTGAAGATCCGCAGCTCTGTCCTGGGTGAGTTCTGGCCACTCCGGGGATAGAGACGAGTCCAAGATACTTTTTTATTTCTCTGGAGGAGAGAAACACATGGGGCGGACCGCCTCTGCTCTCAGGCAAGGGAGGCTGG-TGTGAGGATGTCACTGAAAATAGTTCTACGGAGATAAAGTCGAATTCACTTCTGTTGTCCCCTAGTGAGTACA------------GGTCCCAAGGGAGACGGTGCCCGGACTAACACTGGTCTCCTGGATTCCTACCCAGTGCCT-CCCCATAAAGCCCGGGCTCCCGTCCTCTTGGAAAACAAAGCCAACCGCAGCAGAGGATCCCGGTCCCCAGGCTTCCGAGTGGCCCTGGTGTGCGCGCACCCGCCACACCGCGGGGCGGAGGGGCTAGAACCCCAG--CCGGTGCGGGTCGGA-GCTCAGACACCCGAGTTCAGGGCGACGGGTGCGC-------AGGGTACCGGAGCTGACCCGGCCACCGGG-------------CGGCGGTGTTCCCAGTGTTC-------------CCGGGCAGCAAGGCGCATCCCAGGGAGGGT--GGGGGAGAGCGCGGGCGGCTGCGAGGTCGCCCCGACTTTGCTGCAAAACCGCGGAGGGAGATGAGGGGCGAGCAACAGTGACGGTCG-ATGGAAACCTAGTCCTCGCTGCCACAAAGGAACG a score=16481 s hg19.chr6_ssto_hap7 1763969 447 + 4928567 GTGTGGGGGCTGGGGTTGGTGCGGGCTTCCGGCTTGGCCGCG-GGTGTCTGCA-TCGTTC---AGCCCCGGGGCTTTTGTGTCGGGTCT-GGCCTGGCTTTCTGTCCGCAAGTTTTTGCCCTGCTCCGCGGCGCTCCTCCGGGGCGGGAGCCGCGAGGCCCGG----------------------------------------------GCGAGCTCG--GGCGGGACCGGAGGCTGCGAAGGCTGCCGGGAGCGGGACTCGCAGCTCCTGGATATGCCAGCGTTCCTGGAAGACTCCTGGGTCCTGACGAAAGACAAGTTGATGAGTGAGTTGGTCGCCATTAAAGTGAGGCTCCCGGCC-CGGAGCAGCGCAGAGACCAGGACGCGCAGCCTCGCCTGCAGCACTCGGCCCTACCTCTACCCCGCCGCTACCTCTACCCCGCCG-CGGCGCCGACAGCGAGGG---CCCCGCCTCCCCCAGCTGGCTCCAGAGCCAGGCCACCC s canFam2.chr15 40942884 493 + 67211953 GTGTGTGGGCTGGGGTTGGCGGAGGCGCCCGTCCTGGCCGCGCTGGGTCCGCACTTGTGCTCGGGCGGGGGGGCTTTTGTGTCCGGCTTCGGCCTGGCTTTGTGTGCGCGAGCGTGTGCGGTGCTCGGCGGCGCTCCTCCCGGGCGGGAGCCGTGAGACTCGGAGGCGGCAGCGCGGTCCCCCCCTCCGGCCCCGAGCGCGGCCGGAGAGCGAGCGCGCCGGCGTGAGCGGCGGCTGGGAGGGCTGCGGGCCAGGGGCTTCGCCGCC----GCGATGCCGGAGTTCCTGGAAGACCCCTCGGTCCTGACGAAAGAGAAGTTGAAGAGTGAGTTGGTGGCCAACAACGTGACGCTCCCTGTCGGGGAGCAGCGCAAGGACGTGTACGTGCAGCTCTACCTGCAGCACCT--CACGGCGCGCAACCGGCCGCCG-------CTCGCCGCCGGCGCCAACAGCAAGGGGCCCCCGGACTTCTCCAGCGACGAGGAGCGCGAGCCCACCC a score=7660 s hg19.chr6_ssto_hap7 1764423 125 + 4928567 GAAAGCCATGAAGAAAACAGTTCAACTCAGACCAAAAGATAAAGCTGATCTCGAGGTAACCGCGCTCACTAATGAAGATCTCGTGGACCCGCTTGCGAGGTATGAAGAGAAACCTAGTCCTACTG s canFam2.chr15 40950272 125 + 67211953 GAAAGCCACAAAGAAAACTGATAAACCCAGACCAGAAGATAAAGATGATCTAGATGTAACAGAGCTCACTAATGAAGATCTTCTGGATCAGCTTGTGAAATATGGAGTAAATCCTGGTCCTATTG a score=3627 s hg19.chr6_ssto_hap7 1764550 53 + 4928567 GAACAACCAGGAAGCGATGTGAGAAAAAAACCTTGAAACCGAAGGAACGAGGA s canFam2.chr15 40953270 53 + 67211953 GAACAACCAGGAAGCTATATGAGAAAAAACTGTTGAAACTGAGGGAACAGGGA a score=4727 s hg19.chr6_ssto_hap7 1764875 81 + 4928567 CAATTTAATCTTCAGCAGAAAATGGAAGGCAGAATTGAAATAAAGGTTCTAATAGATACTGTGACAATGAAGAAGACTAAA s canFam2.chr15 40953354 81 + 67211953 CGATTTCTTCTTCAGCAGAAAATACAAGACAGAATGGAAGTAATGACTCTGACAGATACAGTGACAACGAAGAAGGTAAAA a score=5836 s hg19.chr6_ssto_hap7 1764956 87 + 4928567 GTAAAGATCAAGCTTGAGAAGACAGAACCACTAAAGGGCAGAGCAAAGACTCCAGTAACACTGAAGAAAAGAAGACTTGAG-ATAGTC s canFam2.chr15 40958653 88 + 67211953 ATAGAGCTCAAGCTTGAGAAGAGAGAGCCACTAAAAGGCAGAGCAAAGACTCCAGTAACACTCAAGCAAAGAAGAGTTGAACACAATC a score=10358 s hg19.chr6_ssto_hap7 1765043 216 + 4928567 AGAGCTATTCTCACGCTGGAATAACTGAGGCTGAACGCACAAGTGGAGCTTCAGAAGGCGGAGCTCTGCAGGCCTGGAGTAGGGAGTCTACCAGAGACCGGAGGAGAAGGCCAAGGAAGAG---------------------------------------------------------------------------------------------------GGTGGAAAC--CAGAACATTTTCCAATAGACAGTGCAGTAATTTCAGAGAGTGCTCCCACAGCTGAAACTCTAATGGCTTCAGGACACAAAACCTTC s canFam2.chr15 40965920 317 + 67211953 AGAGCTATTCTCAAGCTGGAGTAACTGAGACTGAATGGACAAGTGGATCTTCAAAAGGCGGACCTCTGCAGGCATTAACTAGGGAATCCACAAGAGGGTCGAGAAGAACTCCAAGGAAAAGGGTGATGCAAGGCTTATTGCTTAGAATTGGGTTTTCAGATTGGTAGGGTTTTAGTGATTATTTTATATTTATTGTTTTTGTTTTGTTTTCAAACTAACAGGTGGAAACTTCACAACATTTTCGTATAGATGGTGCAATAATTTCAGAGAGTACTCCCATAGCTGAAACTATAATGGCTTCAAGCAACGAAACCTTA a score=6531 s hg19.chr6_ssto_hap7 1765259 96 + 4928567 GTTGTCAGTAGGATGACTGGAAATTTCAAGCATGCAGCTCCTATTCTGCAACTCAGTAAATTTTCAAACATACCC---CAAACTCCAAAGAGACCACTG s canFam2.chr15 40966670 99 + 67211953 GTTGTCAATAGGGTGACTGGAAATTTCAAGCATGCAGCTCCTATTCTGCCAATCACTGAATTCTCAGACATACCCAGAAGAACACCAAAGAAACCATTG a score=6136 s hg19.chr6_ssto_hap7 1765360 81 + 4928567 GGGGGGGAACAGAATAAAGAAGAGTAGAAAGGGATATTCTTAAGGAAATGTTGCCCTATGAAGCATCTACACCAACAGGAA s canFam2.chr15 40967804 81 + 67211953 GAGAAAAAACAGAGGAAAGAAGAATAGAAAGGGATATTCTTAAGGAAATGTTTCCCTTTGAAGCATCTACACCAACAGGAA a score=34035 s hg19.chr6_ssto_hap7 1765441 636 + 4928567 TTGCTGCAGACCAGTCAAAGGGGCTACAGGCAGGCCATTAGAACTCACTGAGTTCAGGATGGCAGAATCTTTTTCATCTAAATATGTTCCTAAGTGTGTTCCCTTGGCAGATGTCAAGTCAGAAAAGACAAAAAAAGAATGAGCCATTTCTGTATGGACAAAAATTTTGCTGTTTGTTGTTGTAGTAGGTTTTGTTTGTTTGTTTTTTGGTCTATCAAGCTATAGAAACCAAACAAGGAAATCTTTTCTCTAACGTTCTTCCTGATGACTCTAG-AAACCCAACTGAATGGAATCCATCTGGCACATTCAAGTTGGTCTCCTATTTT---TAATAACTGTATTGAAAAACACTTGTGTACCCTTGTTGACTTAAATAGCTAAAAAAAAAAACAGGTGATTTCACCTCAATAAATGTAGTATTCCATGAAAAGCAAACAAAATATATATAAATGAACTTCATTAGAGTGTTTTTGAACTCTGGACTAGCAGGAGATCACTTCATGCCATATGAA-AATCTTTTATAGCTCTGAAACTTTTTTGTAGGCTTTTTAAAATTTTTTCTTCTCATTGTCCAAACCCATGCAGGGTTTCTTTAAAATGTGGACACCTGGTTTCCTTTTTGAAAAATGAGatatatat s canFam2.chr15 40969097 581 + 67211953 TTGCCGCAGACCAATCAAAGGGGCTGCAGGCCGGCCATTAGAACTCAGTGATTTCAGGATGGAAGAATCTTTTTCAACTAAATATATTCCTAAGTATGTTCCCTTGGCAGATGTCAAGTCAGAAAAGACAAAAAAAGGACGCTCCATTCCCATGTGGATAAAAATTTTGCTGTTTGTTGTTGTGG------CCATTTTTTTG-TTTTTGGTCTATCAAGCTATGGAAACCAACCAAGGAAATCCGTTCAGTAGTTTTCTTTCTAATGACTCTGGTAAATCCATCTGAATGATATCTCTTTGGCACACTCAATTTGGTCTCCTATTTTTTCTAATAACTGTA-TAAAGAAAATTTGTGTACACTTGTTGACTTGAG-AACTAAAAATA-----ATGTGATTTCACCTCAATAAATGTAGATTTCATTGAAAAGCAAACAGG--ATATATAAATGGACTTCATTTAAATG-TTTTGGACTTTGGACGAGTAGGAGATCACTTCGTGCCATATGAATAATCTTTTTTAGCTCTGGAACATTTTTGTAGGCTTT-----ATTTTTTT-----------------------------------AATGTGGACATCTTATTTCACTTTTGAGAA---AAATGTATAT a score=15820 s hg19.chr6_ssto_hap7 1766260 263 + 4928567 tatatacgtatatatatGAAACAAGAAGGGAAAAACATGGTAATATAGTATGAAGTTACACATTTAAATACTTTGAATTCTTACAGAAAAGAGTGGAAGAATTATCTTCTACTGAATAAAAACTTTACAGACATGGAAGACAATGAAATTTGGTAAGAGAAAAAGTAACAT-GGTTGTACTTTTTGTAACTGCAACGAAATTTGATGGTGTTTATGAGGAAAACTACAGCAATAATCTCTTCTGTAACTTTTATTAATAGTAAT s canFam2.chr15 40969678 260 + 67211953 TGTTTTTGTGTATTTGGGAAACAAGAAGGGCAAAATATGGTAGTATAATGTGAAGCTACACATTTAAATACTTTGAATTCTTACAGAAAAGATTTTAAGTATTATTCTCTGCTGTATAAAAACTTTAGAGATACGTGAAAC-ATGAAA-TTGGTAAGAAAACAAGTAACTTGGGTTGTACTTTTTGTAACTGCCAC-AGGTTTGAT-GTGTTTATGGGGGAACATACAGCAATAATCTCTTCTGTAACTTTTATTAATAGTAAT a score=15211 s hg19.chr6_ssto_hap7 1766609 180 + 4928567 AGGTTCTGGGAAGTTCTGGATTGTTTAATAACCATGGACTCCAAGTACAGCAGCAACAGCAAAGGAATCTCTCACTACATGAATACATGAGTATGGAATTATTGCAAGAAACTGGTGTCTCTGTTCCCAAAGGATATGTGGCAAAGTGACCAGATGAAGCTTATGCAATTGCCAAAAAAT s canFam2.chr22 6382598 180 + 64401119 AGGTTCTGGGAAGTTCTGGATTTTTTAACAACCATGGACTCCAAATACAGCAGCAGCAACAAAGGAATCTCTCACTACATGAATACATGAGTATGGAATTGTTGCAAGAAGCTGGTGTCTCCATTCCCAAAGGACATGTGGCAAAATCACCAGATGAAGCTTATGCAGTTGCCAAAAAAT a score=9385 s hg19.chr6_ssto_hap7 1766789 103 + 4928567 TAGGTTCAAAAGATGTTGTGATGAAGGCACAGGTTTTAGCTGGTGGTAGAGGAAAAGGAACATTTGAAAGTGGCCTCAAAGGAGGAGTGAAGATGGTTTTCTC s canFam2.chr22 6394276 103 + 64401119 TAGGTTCAAAAGATGTTGTGATAAAGGCACAGGTTTTAGCTGGTGGTAGAGGAAAAGGAACATTTGAGAGTGGCCTCAAAGGAGGAGTGAAGATAGTTTTCTC a score=12900 s hg19.chr6_ssto_hap7 1766892 163 + 4928567 TCCAGAAGAAGCAAAAGCTGTTCCTTCACAAATGATTAGGAAACAGTTGTTTACCAAGCAAATGGGAGAAAAGGGCAGAATATGCAATCAGGTATTGGTCTGTGAGTGAAAATATCCCAAGAGAGAGTGCTACTTTGCAATAACAATGGAAAGGTCATTTCAA s canFam2.chr22 6394770 163 + 64401119 TCCAGAAGAAGCAAAAGCTGTTTCCTCACAAATGATTGGGAAAAAGTTGTTTACGAAGCAAACGGGAGAAAAGGGGAGAATATGCAATCAAGTGTTGGTTTGTGAGCGAAGATACCCCCGGAGAGAATACTACTTTGCAATAACAATGGAAAGGTCATTTCAA a score=9317 s hg19.chr6_ssto_hap7 1767055 126 + 4928567 GGTCTTGTATTAATAGGAAGTTTACATAGTGGGGCCAACATTGAAGATGTTGCTGCTGAGACTCCTGAAGCAATAATTAAAGTACCTATTGATATTGTAGAAGGTATCAAAGAGGAATAAGCTCTC s canFam2.chr22 6404067 126 + 64401119 GGTCCTGTATTAATAGGAAGTTCTCAAGGTGGAGTCAACATTGAAGATGTTGCTGCTGAGACTCCTGAGGCCATAGTTAAAGAACCTATTGATATTGTAGAAGGCATCAAGAAAGAACAAGCTGTC a score=11258 s hg19.chr6_ssto_hap7 1767181 141 + 4928567 CAGCTTGCACAGAAGATGGGATTTCCATCTAATATTGTGGCTTCAGCAGCAGAAAACATGATCAAGCTTTACAGCCTTTTTCTGAAATACGATGCAACCATGATAGAAATAAATTCAATGGTGGAAGATTCAGATGGAGCT s canFam2.chr22 6407075 141 + 64401119 CAGCTTGCACAGAAGATGGGATTTCCATCTAATATTGTGGACTCTGCGGCAGAAAATATGGTCAAGCTTTACAACCTTTTCCTGAAATATGATGCAACTATGGTAGAAATAAATCCAATGGTAGAGGATTCAGATGGAACT a score=20678 s hg19.chr6_ssto_hap7 1767322 301 + 4928567 GCATTGTGTAAGGATGCAAAGATCAATTTTGACTCTAATTCAGCCTATCGCCAAAAGAAAATGTTTGATCTACAGGACTGGACCCAGGAAGATGAAAGGAACAAAGATGCTGCTAAGGCAGATCTCAACTACACTGGCCTCGATGGAAGTATAGGCTGCCT----------------------------------------------------------------------------------------------AGTAAATGGTGCTGGTTTGGCTATGGCCACAATGGATATAATAAAACTTCATGGAGAGACTCCAGCTAATTTCCT---TGTTGGTGGTGGTGCTACAGTCCATCAAGTAACAGAAGCATTTAAGCCTATCACTTCAGATAAAA s canFam2.chr22 6412044 398 + 64401119 GTGCTGTGCATGGATGCAAAGATCAATTTTGATTCTAATTCAGCTTATCGCCAGAAGAAAATCTTTGACTTACAGGACTGGACCCAAGAAGATGAAAGGGAGAAAGGTGCAGCTAAGGCAAATCTCAACTACATTGGCCTTGATGGAAATATAGGCTGTCTAGGTACCCTGTGTTGCTATGTTAAATTTGGATTGGCTGAGCTTAATTTATTTTCTTCATGTTTGTTGTTTATGTAAATCATTTTCCCTCTTCACAGTAAATGGTGCTGGTTTGGCTATGGCCACAATGGATATAATAAAGCTTCATGGAGGGACTCCAGCAAACTTTCTTGATGTTGGTGGTGGTGCCACAGTCCATCAAGTAACAGAAGCATTTAAACTTATCACTTCAGATAAAA a score=9555 s hg19.chr6_ssto_hap7 1767623 121 + 4928567 AGGTACTGGCTATTCTGGTCAACATTTGTGGAGGAATCATGCACTGTGATATTACAGCAAAGGGTATAGTCATGGCAGTAAAAAGTTTGGAAATTAAAATACCTGTTGTGGTACAGTTACA s canFam2.chr22 6417751 121 + 64401119 AGGTACTGGCTATTCTGGTCAACATTTTTGGAGGAATCATGCGGTGTGATGTTATTGCACAGGGTATAGTTATGGCAGTAAAAGATTTGGAAATTAAAATACCTATTGTGGTACGGTTACA a score=6416 s hg19.chr6_ssto_hap7 1767744 92 + 4928567 AGGTACACAAGTTGATGATGTTAAGGCACTAAAAGCAGACAGTGGACTTAAAATACTTGCTTGTGATGATTTGGTGGAAGCTGCTAGAGTGC s canFam2.chr22 6418328 92 + 64401119 AGGTACAAGAGTTGATGATGCCAAGGCACTGATAACAGACAGTGGACTTAAAATTCTTGCTTGTGATGACTTGGATGAAGCTGCTAAAATGG a score=43590 s hg19.chr6_ssto_hap7 1767836 742 + 4928567 TTGTAAAGCTCTCTGAAATAGTGAA----GCAAAGCAAGCGCATGTGGATGTGAAATTTCAATTGCCAATATGATCTGAAAACCCAGTG-ATGGCTGAAGGTGTTAAATGTGCTACAATCATTAAGGATACTGTGTTCTGTGTTATTGTT---------CTTTTAAGTGTGTGGAGATTGTAGTTGCCATCTAGGCACACAAACATTTAAAAGCATTTGGTTTGCATTTAATTCTACCATTCAGAATGGACTGTTTGTAAGAAGCATGTATAATGCAAATACCTTCTTTATTTCGTCACAGCCAGTCTTTTTTGCTTCTACAAAATGCAACTTGCAATATGACAGTTTATTATTGTTGGATACAAAGTTCTTCATTGATAAGAGACCTACAAATAAAATAAATATGAAGATAAAGCTTTATTCTTCAGTGTTA-ACATACAGTATATCTAATAACTAGCCTCATTAGTAGACCAGTATATTAAAACACTGTTTTATGTAAAAAGTGTTTATCTTCAGCACCAAATACATAATAAATGTAACAATCACTATTTATAAACAGAGCTTTCAAACACTCCTCAGAAAATCAAAATACTTCTAAGTATTTTGATGAAATAACTTTGTAATTATGTGAACATTGTTTTAATCATTAGGAAACGCTGATAACTGCAAGAATTCATGATTCCATGGTATTAAGAAGCACCTGTAGGTTTGTTTCAAATAGAGGCATATTAACCAAGG--------GAAAAAAATAGTAATGTT s canFam2.chr22 6420283 741 + 64401119 TTGTAAAGCTCTCTGAAATAGTGAACTTAGCCAAGCAAGCCCAGGTGGATGTGAAATTTCAGTTGCCAATCTGATCTGAGAACCCAATGGATGGCTGAAGGTGTTAAATGTGCTATAATCGTTAAAAATACTGTGTTCTTTATTATTATTGTTCCTTTTCTCTTTAGTGTGTGGAGATTGTAATTGCCAGCTAGGCACAAAAAC--TTAAAAGCATTTGGTCTGCATTTAATTCTACTGTTCAGAGTGGGCTGTTTGTATAAAGAATGTGTAATGCAGTGATCTAGTTTGTTTTGTTGCAGCT-TTCTTTTTCACTTCTATAGAATGTCATTTGCAATATGCCAGTTTACT---GTTAGTTTCAACATTCTTCATTGAT--GAGTCCTATGAATAAAATAAATATGAAGATAAAGCTTTATTCTTTAGTGTTAGAAATATATTATATCTAA---CTAGGCTCATTAGTAGAGCAATGTATTAAAACAATGTTTTATATAAGAAGTGTTTATCTTCAACACCAAATACCTAA---GTATATCAATTACTATTTATAAACAGAGCTTTCAAACACTCCCCAGAATATT------CTTTTAAGTATGTCAGTGAAGTAACTT----GTTATTTGAACATTGTTTTAATCATTATAAAACACTGATTACTGTAAGTATTCATGATCCTGTGGTATTGATAAGAACCAGTAGGTTTGTATCAAATAAAGGTATATTCACTAAGGACTTGGCAGACAAAATTAGCGATGTC a score=17512 s hg19.chr6_ssto_hap7 1768578 403 + 4928567 ATTATTGTAGCCCTATCATATTCACTTTTTAAACGACTGGCTTTTAAAAGTATCATGAAAGTCCTACTTCAGTAAAACCCATTTAAGTACAGTTGATG-TTTAGCAGGGATCTTTTAGTGCAGCATAAACATGCTTTAGAGAACTGTTGGCTGGCTGTACATGTTTTTAAAAGCTGTTAGCTAGCTATGAGGCTACAGCTGAAAA-TTACACTTTTTA--------------------------------------------------------------------------------TGAGAAATTGTAAACACTGGTCTTATGTTTCATCTGGATTCCTTATTGCATCATCTTCTGTTAACAAAAACAAATTTTCCCAGTTTTTTTGCCTTGTATTTCCCAGCACAATTTCATTTAAAAGTACAAAAAGTGTTTGCTCTCAAATTGCATCATAAGCAAGTGTTAATACTCTGGGCTTTTTTAt s canFam2.chr15 40969938 472 + 67211953 ATTATTGTAGTCCTATTGTACTCACTTTTTAAAAGA-------TTTCTAGCATCATGAATGTCCTACTTCAGTAAGACCCATTTAAATGCTGTTGATATTTTAGCAGGGATC-TTTAGTGCAACATATACATGTTTTAGAGAATTGTTAGCTAGCTGTACATGTTTTTAAAA-CGTTTAGCTAGCTATAAGGCTGTAATTGGAAACTTGTACTTTTTATTTACAACAAAACATTTATTCTGTTAATCCAGTTTGCTACCAAAATATTTTTTAGATATAAGTGTGTGTCTGTTTAGAAGTTAGAAACTTTAAATACTGGTCTGAGGTTCCATTTGGATTCATTATTACATTGTCT--TGTTACCAAAAACAAAATTTGCTA-TTTTTTTCCCCTATATTTTTCAACAGAATTTGATTTAAAAGTCCAAAAAGTGTTTACT-TAAAATTACATAGTAAACttttctttttttttttttttttttttt a score=21856 s hg19.chr6_ssto_hap7 1769643 440 + 4928567 ATACTTAGAGTTGTAAACTGTGAATATGAAGTGGGCATTATGA-TTTTGTGTACTCTTGAAATGG-----TTATCTTTGTGATTGATT-------TTTTTAAGCTGCAATTTACCTCATGAATAATTCGGTTACATAAACTAGTAAGTGATTGAAATTTGAATAGAATTGAGTAAAACATGAAAATTTTAAACTGACTCATTTCAGTTTCAACTTTCCAGTCACTGACCATAAAGCACATTAAAAATGTAAACTAGTCTTCAATATCATCTGAAATGAAAAAACACTTTTAAAAAAG--GAAGCTAAAGATATATATTTAGAACAG-CACACAATTTTGATTTGAATTAGCCCTATTCTGATATTCAGCTTTTAGATATGCTGAAGACA-TTTTCAC-CGACTTTGCAATTGAGACCAGAAGGTCTTGTAGGTCTGGCCCTGCAGAGTGAGTGgcaaa s canFam2.chr15 40970454 448 + 67211953 ATACATAAATTTATAATCTCTGAATATGAAGTGGGCATTATGATTTTTATATACTCTTGAAATGGTTAACTTATCTTTGTGGTTGATTTATTTTATTTTTTAGTTAAAACTTACCTCATGTATAACTTGGTTAAGTAAAGTAGTAGGTAATTGAAATTTCAGTAGAATCAAGTAAAAC---AAAAATTTAAACTTACTCATTTGAATTTAAACTTTACAGTGATTGACCATAAAGCACACTAAAGGTATAAGTTA-TTTTAAATATCATCTGAAATAAAAAGATACTTTTAAAAAAGCAAAAGCTTAATATGTATATTTAGACCAACCACACAATTTTTATTT-CATTAGCTGTATTCTGGTGTTTGGCTTTGAATTATTTTGTAGACATTTTTCACTTAACTTTGCAATTGAT----GAGAAATTTGTAGGTCTGGTCCCATGGAG-GAGTGGGGAA a score=8146 s hg19.chr6_ssto_hap7 1781998 441 + 4928567 GGAAGCAGCAGAACAAATTT-CAGGGACTCAGGAGTCCAAGGCCTCATTCCAAAAACACTGAGAGGCTGCGTACTGGGAGCACAGTATGTCTGTGGGGTCCAC-CCAGACCTGGGAACCAGGTCTTAGGGCCTGCAGACCTCCCTCTGCCTTGAGGTCAGAGTCCACTGCCAC------------------------TAACTGGGAGGAAACA-------------CCTGTCGCGGGACGGGGTCGCCCGCATGTGCACAGAGCCCTGTTCTG---CCGAGATCCGAAGGGGAACCTGGGGAGGTCCCAGATGGGGAAGGGACAGG-AGAGCTGGGTGTCTCT-CCTCAGTCCTTCGGCCACACGGGGCCGCTGCCGCTCTACGCTTGGGTTCTGA-TGAGCTGCTCTGGAGAGGACGGGGCGGTGGTCTGAGTAAGACACAGATTGTTGATCCAGAAAGGATGTATCAATGAGGTGGGGCTGGGG s canFam2.chr12 71488153 436 - 75515492 GGCAGCAGCAGAAAGAAGTGACAGGAACTTAGGAGTCCTAGGTCCTATCT---------TTGGAGACCGGGCACT-------CAATTTCTTTGTGCGGTCCATACCAGATCTGGGAACCAGCTGTGATTGCCTGGAGAACTTGC----CCCTGAGGGCGGAATCAGTGATCATGCAAAGAAAACATCTATGTTATTGTGGATTTGGGGGAACATTTTGCAACCCAGCCTGACATGG-ACAGGGGCAACCTTTTGTGTTCAAAGCCCTGATCTGGTGTTGGGAGCAGAGGGAGACCCTGGG-AGGTCCTTGCTGTGCAAGAGAAAGGGAGAACTTGGTCTTCCAACCTCATCCCTGTGACCACACGGGGGCGCCGCTGCGCTGCTCCTGAATTCTGACTGAGCAGC-CTGGGAGGGTCTGGGCTGTAA-------------------GTTGCTCAGGGGAGG--------CTGACCTGGAGCTTGGG a score=3829 s hg19.chr6_ssto_hap7 1782460 166 + 4928567 CTTCTGAGAAGCCCTGGACTGCGCGGGGTTCCGGCTC-----TGCGG----------AACAGAGG------AGGGCTCTGGAGCTGCCTGTCTCTGAGGTTTCCAACTCCTCCTTGCAAACCCTCCCTCCAGCCTTTTCATGGCAACACTCCAGGAAAATGGAAAGTTGATCATTTTTTTCTTCCAC s canFam2.chr12 71488616 181 - 75515492 CTTCTGAACAGCCCTGGACTCCACAGGTGTCAAGATCAGGAATGCGGCAAGGATTGAAGGAGAGGAGATGTAGGAACCTTGAGTCATCCATC----AGGTTTCTGCTTCTCCACTGTGACCCCTCTCTCCAGCTCCTTGATGACAGCGCCCAGAAAAGCCGAAAAG--AAACATTTTATTTTCCTAT a score=7104 s hg19.chr6_ssto_hap7 1784361 441 + 4928567 AATTAAGGTCCTCTCCTGTGTACGTTTTGAAATCAATGGGTAGAGTACGCCAAAGTTAATTTGGATCTTCAATGGCCATCCTTGGGGCCTTTTGAGTTCCCCAAACTTGTCTTCCTTAAAACAAAACTAGAAGACCATGGTCCTAAAATTAAACAATGTGAATGGGAGGCTTAGTTTACTTGGTACTTCAAAGTTTCATAATGCATTCGGGATTCAAACATTGCCTCCCTCTAAGATTCTATCACAAAATTAACTGAGACCAGCAAACAGTTAAGGAAGGACAACAAGGCTTTAGGGCCCCAGATTCT-----TTCCTCTCCAGAGGAGAGAT-----TTCCTGTTCTCTTTCCTCTGTTCTTCTGTATCCACCTTTGGCTGAATTACCT--TTCCCTCCAAT-TCCTCAGCTTCCACTACCCTTGAACCTGGACTGTTAAAACTTATCCCCTT s canFam2.chr23 52279882 434 + 55389570 AACCATGGTCCTTCCTCTTGTAAATGTTCATCATGGTGGAACAATAACACCAAAGACAATTTACAATTACAGTGGTCACTTCGGGGCTCTTCTGAACTCCCACAACTTGTCTTTGTGCACATTAGGCTTGAGAGCCTTGGATTCAGAACCAAACAAATTGAATAGGCTGCTTATTAAAATCGATATCTGGAAGCTTCAAAACGAACTCAAGTCTCTGAGATTACTTATCTTCAGAATATGGTGTCCAAGTTAG--------AATTCTCAATTAGAAAAGACCCATAAAGACTTATAAATTCATCTCTTCAGTCTCCCTCTGCTGCCTCGGGTTACTCCTTCCTCCTCCACCTCCTCTACTCCTCTTTACCCCTCTCTGGCTGAACATCCTTCTTCCCCCCAAGATCCTGAGGTTT-----CTCATGATCCT--CCTGTT-----TTATCCTCTT a score=74646 s hg19.chr6_ssto_hap7 1785967 1056 + 4928567 GAGTCAGACGGGCATGGAGACGCTTCTGGAAGGAACACCGCAATGGCTGCGCAGGGACAGCCCCAGGTCCAGTTCAAACTTGTATTGGTTGGTGATGGTGGTACTGGAAAAACGCCTTTCGTGAAACATCATTTGACTGGTGAATTTGAGAAGAAGTATGTAGCCACCTTGGGTGTTGAGGTTCATCCCCTAGTGTTCCATACCAACAGAGGACCTGTTAAGTTCAATGTATGGGACACAGCCGGCCTGGAGAAATTCAGTGGACTGAGAGATGGCTATTATATCCAAGCCCAGAGTACCATCATAGTGTTTGATGTAACATCGAGAGTTACTTACAAGAATGTGCCTAACTGGCATAGAGATCTGGTATGAGTGTGTGAAAACACCCCCACTGTGTTGAGTGGCAACAAAGTGGATATTAAGGACAGGAAAGTGAAGGCGAAATCCATTGTCTTCCACCGAAAGAAGAATCTTCAGTACTACGACATTTCTGCCAAAAGTAACTATAACTTTGAAAAGCCCTTCCTCTGGCTTGCTAGGAAGCTCATTGGAGACCCTAACTTGGAATTTGTTGCCATGCCTGCTCTCGCCCCACCAGAAGTTGTCATGGACCCAGCTTTGGCAGCACAGTATGAGCACGACTTAGAGGTTGCTCAGACAACTGCTCTCCCGGACGAGGATGATGACCTGTGAGAA-TGAAGCTGGAGCCCAGCGTCAGAAGTCTAGTTTTATAGGCAGCTGTCCTGTGATGTCAGTTGTGCAGCGTGTGTGCCACCTCATTATTATCTAGCTAAGCGGAACATGTGCTTCATCTGTGGGATGCTGAAGGAGATGAGTGGGCTTCGCAGTGAATGTGGCAGTTCAAAAAATACCTTCA-TTGTTTGGACCTGCATATTTAGCTGTTTTGGAACACAGTTGATTCCT---TGAGTTTCAAATA--TAGACTGCTACAGTCACATCACAATATTCAGCGGTGAAATCTTGTTTGTTACTGTCATTCCCATTCCttttcgtttagaatcagaataaagttgtatttcaaatatctaaaaacaaaaa s canFam2.chr35 474083 1057 - 29542582 GAGTCAGACGGGC-CGGAGACGCTTCTGGAAGCACCAGCGCTGTGGCTGCCCAGGGAGAACCCCAAGTCCAGTTCAAGCTGGTGCTGGTTGGCGACGGCGGCACCGGCAAGACCACGTTCGTGACACGTCACCTGATGGGTGAATTCGAGAAG---TATGTAGCCACTCTGGGCGTGGAGGTCCACCCCCTCGTGTTCCACGCCAACAGGGGCCCCATCAAGTTCCACGTGTGGGACACTGCCGGCCAGGAGAAGTTCAGCGGGCTCTGGGACGGCTACTACATCCAAGCCCAGTGTGCCATTATGATGTTTGATGTAACGTCAAGGGTTACTTACAAGAATGTGCCTAACTGGCATAGAGATCTGGTACGAGTGTGTGAGAACGTCTCCATTGTGCTGTGTGGCAATAAAGTGCATATTAAGGACAGGAAAGTTAAGGCAAAATCTATTGTCTTCCACCGAAAGAAGAACCTTCAGTACTATGACATTTCTGCCAAAAGTAACTACAATTTTGAGAAGCCGTTCCTGTGGCTTGCTAGAAAACTAATTGGAAACCCTAACCTGGAGTTTGTCGCCATGCCTGCTCTTGCCCCCCCAGAGGTGGTCATGGATCCAGCTCTGGCAGCACAGTACCAGCACGATCTAGAGGTTGCTCAGACGACCGCGCTCCCGGATGGGGATGATGACCTGTGAGAAGTGCAGCTGGAGGCCAGCGTCAGAAGTCTAGTTTTACAGGCAACTGCCCTGTGATGTCAGCGGTGCAGCGTGTTTGCCACTT--TTATTATATAGCTGAGCAGAACATGTGCTTAATCTTTGGGATGCTGAAGGAGATGAATGGGCTTCGGAGTGAATGTGGCAGTTTAATCAGTACCTTCATTTTTTTGGACCTGCATACTTAGCTGTTTTGGAACACAGTTGTTTCCTTCCTGAGTTTCAGATAATGAGACTGCTACAGTCCCATCACATTATCCAGTGGTGAAATCTCGTTTGTCACTGTCATTCCCATTCCTTTTCGTTTAGAATCAGAATAAAGTTGTATTTTAAATATCTAAAAAAAAAAA a score=1456 s hg19.chr6_ssto_hap7 1788628 57 + 4928567 ACGttgtttattttggaaaaattaaaaattaagttttttttcattaaagatatgtta s canFam2.chr12 3935683 47 + 75515492 accctgtgtatttggggaaat----------agttatttttcataaaaacaatatta a score=1692 s hg19.chr6_ssto_hap7 1788924 59 + 4928567 ctattaacatgtaatgggttattaatattctcttaa-----------------------------atgaattaata----tttttaatattt s canFam2.chr12 3935730 92 + 75515492 ctgttttcatggcatgggttattaatatgattctaatcatattaattaaatcatatcatttattaatgaattaataaaattttacaatattt a score=2265 s hg19.chr6_ssto_hap7 1788983 85 + 4928567 tgttttaatatcttttaatttatatatgataaaaattgata---caatccacagaaacaaaatttatttgggtcctcactaatttctt s canFam2.chr12 3936015 87 + 75515492 tttttaaacctcttttgttcctactatgataaatattgacagattaacccacagccacaat-tttcctgggatcctcagtaatctgtg a score=91750 s hg19.chr6_ssto_hap7 1789379 2493 + 4928567 aaagtttaagaactgctgATTGCT------------------------------------GGGAAACTCTG-------------CAGTTTCCCG----------TTCCTCTCGTAACCTGGTCATGTGTCCTTCTTCCTGGATACTCATGACGCAGACTCAGTTCTCATTCCCAATGGGTGTCGGGTTTCTAGAGAAGCCAATCAGCGTCGCCACGACTCCCGACTATAAAGTCCCCATCCGGACT--CAAGAAG-------TTCTCAGGACTCAGAGGCTGGGATCATGGTAGATGGAACCCTCCTTTTACTCCTCTCGGAGGCCCTGGCCCTTACCCAGACCTGGGCGGGTGAGTGCGGGGTCGGGATGGAAACGGCCTCTACCGGGAGTAGAGAgggg--------------------------------------------ccggcccggcgggggcgAA------GGACTCGGGGAGCCGCGCCGGGAGGAGGGTCGGGCCGA-TCTCAGCCCCTCCTCGCCCCC--AGGCTCCCACTCCTTGAAGTATTTCCACACTTCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCTCTGTGGGCTACGTGGACGACACCCAGTTCGTGCGCTTCGACAACGACGCCGCGAGTCCGAGGATGGTGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGTCAGAGTATTGGGACCGGGAGACACGGAGCGCCAGGGACACCGCACAGATTTTCCGAGTGAACCTGCGGACGCTGCGCGGCTACTACAATCAGAGCGAGGCCGGTGAGTGACCCCGGCCAGGGGAGCAGGTCACGACCCCTCCCCATCCCCCACGGACGGCGCGGGTCCCCTCGAATCTTCGGGTCCCAGATTCACCCCAAGGCTGCGGAACCCGCCC-------AGACCCTAGA-CCGGGGAGAGTCTCAGGCGCCTTTAC---CCGGTTCTTTTTCAGTTTAGGCCAAAATGCCC----------------ACAGGGTGGTGGCGACGGGGGCGGGGCTTGGTG------GGCGGGACTGACTAAGGGGCGGGGCCAGGGTCTCACACCCTGCAGTGGATGCATGGCTGCGAGCTGGGGCCCGACAGGCGCTTCCTCCGCGGGTATGAACAGTTCGCCTACGACGGCAAGGATTATCTCACCCTGAATGAGGACCTGCGCTCCTGGACCGCGGTGGACACGGCGGCTCAGATCTCCGAGCAAAAGTCAAATGATGCCTCTGAGGCGGAGCACCAGAGAGCCTACCTGGAAGACACATGCGTGGAGTGGCTCCACAAATACCTGGAGAAGGGGAAGGAGACGCTGCTTCACCTGGGTAAGAGGGTCCACAGGGCTACTCTCCCATCTCCTTCTTGGGCTAGGACTGTGCCCACAGCTGACAGACCTCAAACAGTAGAAGAAACAGGGATGGAGGCCAGAATACCACTCCTCCCTTGGATCAGGAGAGGGAGCTGTCACCTGAGGTACAGGAGATCCTATACCACAGAGTGACTCTCTTAAAGGGCCAGACCTCTCTC-AGGGGCAATTAAGGAATCTAGTCTCGCTGGA---------GATTCCATCCTTCAGATGAACTGATGAGCAGTTCTCTTTGACTCCCAGTAT-----TAGGAATCACGGGGGAGTTTCTCTCGTGCCTGATTCTCAGCCCCACACCAAGAGTTTTTGGAGGTCTGACTCCAGCTTTTCTCAGTCACTCAGCATCCACACAGGCCAGGACCAGAAATCC-CTTTTCACCTT--------------CTACCCTGGGCTAGCTCATCCCGATTCTAGAACTTTCCAAGGAATAAGAGGCTATCCCAGATCCCTAAGTCCAGGCTGGTGTCAAGGTTTTGTCCTCTTCTCCTACTA---TAATTGTCCTCTTCCTTCTCAGGATGGTCACATGGGTGCTGCTGGAGTGTCCCATG-AGAGATACAAAGTGCCTGAATTTTCTGACTCTTCCC-CTCAGAGCCCCCAAAGACACACGTGACTCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCAGGATGGGGAGGGCCATACCCAGGACACGGAGCTCGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCCATGTGCAGCATGAGGGGCTACCCGAGCCCGTCACCCTGAGATGGAGTAAGGAGGGGGATGGGAGGTCATGTCTCTTCTCAGGGAAAGCGGGAGCCCTTCTGGAGCCCTTCCGCAGGGTCAGGGCTGAGGCCTGGGGGTCAGGGCCCCTTACGTTCCCCTCTTTTCCCAGAGCCGGCTTCCCAGCCCACCATCCCCATCGTGGGCATCATTGCTGGCCTGGTTCTCCTTGGATCTGTGGTCTCTGGAGCTGTGGTTGCTGCTGTGATATGGAGGAAGAAGAGCTCAGGTGGGGAAGGGA--GAAGGGTGGGGTCTGAGTTTTCTTGTCCCACTGGGTGTTTCAAGCCCTAGGTAAAAGTGTGTCCTGCCTCGTTACTGGGAAGCACCATCCACACACACGAGCCTACCCAGCCTGGGGCCCTGTGTGCCAGCACCTACTCt s canFam2.chr12 3936207 2571 + 75515492 AAGGTCTCAGGACCCCGGGCTGCCTCTCAGGCTCTCATGCCCCAGGGCGGGTCCGGGGCGGGGACGCTCAGGCTCGGGAGTCCCCACCTCCCCGGGGATTTCACTTCTTCTCCCAACCTGGCTCTGGGCCCC-CTGCCTGGAGACTCATGACGCAGCCCCAGCGCGCACTCCCATTGGGTGCAGCCTTTCTGGAGGAGCCAATCAGCGGCACCG-GGTCCCGGGCTCTGAAGTCCACACCAGAACCGCCAGGACGCAGCTGCTCCACCGACCCTAAAGGTCTGGGCTATGGTGCCCGGAACCCTAGCCCTGCTGCTGTCGGGGGCCCTGGCCGTGACCCTGACCCGGGCGGGTGAGTGCGGG--CGGGAGCGAGGGGACC---GGCGGGCGGGGACGCGGGACCCCGGGAAGccgcctctccgccgcccccggcccctcccgcctccgccccgccccgggcatctcccctgggccccgggccccgcGGCGGGAGG-GGGTCGGGCGGGGTCTCAGCCC----TCGGCTCCGCAGGCTCCCACTCCCTGAGGTATTTCTACACCTCCGTGTCCCGGCCCGGCCGCGGGGACCCCCGCTTCATCGCCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCGGCCACTGGGAGGATGGAGCCGCGGGCGCGGTGGATGGAGCAGGAGGGGCCGGAGTATTGGGACCGGCAGACGCGGACCATCAAGGAGACCGCACGGACTTTCCGAGTGGACCTGGACACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTGAGCGGCGCGGGCCCGGGGC-CAGGGCACGACCCC----CATCCCCC-CGACCGGC-CGGGTCGCCCCGAGGGTCCGGGTCCGGGCGTCACCCCGAGTCCGAGGCCCCCCACCCTAAACGGGTCCTCAGAGCCAGGAAGAGGC-CGTGCGCCCTTTCGAGCGGTTTTCCTTTCGGTTTGAACTTAGAAGTCTTGCGGTCCCGGGACTACTCGGGTGTTCACCGCGGGGCGGGGCCTCGGGGCCTCGGGGCGGAGCTGACCGCGGGGGGGGGCCAGGGTCTCACACCTTCCAGTGGATGTTTGGCTGTGACCTGGGGCCCGGCGGGCGCCTCCTCCGCGGGTACAGTCAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACGCGGCGGCGCTGATCACCCGGCGCAAGAGGGAGGCGGCAGGTGATGCAGGGCACCTGAGGAACTACCTGGAGACGACGTGCGTGGAGTGGCTGCGGAGGTACCTGGAGATGGGGAAGGAGACGCTGCTGCGCGCAGGTACCGGGGCCCC--GGGC--CTCCCCGATCTC-----------------GCCTCCACTAGGGAGGGCTTCCCACCAGGAAGGGAATATGGACTCAGGGTCAGAACACGGCCCCTCCCACGGGTGGGGACAGGGGATC--CGCCTG-GGTGTTGATAGTCCTAC----TAGGGTGACTCACCCAGAGGCC---GCTTTTCTCGAAGGACAATGGAGCAATCCAGGGTCTCCGGGAGGCAGGTGGAGGCCATCCTG-AGATAACC--GCCAGTGGTGCCCTTTGAC--CTGGCAGCTGGGTGGGAACCATG----ACTTTCCCTCAAGGCC--TTCTT-----CAATGAAAACATATTTGGAGCTTGAACTGGGAGTTTTCTGACTCCTTCAGCCTCCACCACGGTCAGGACCATTAGTGTGCTCTCCACCTTAGACCTGCAGCCTCCTACCCTGGACT--CTCTCCCTGATTCTAGAA-TTTCTAAAGATTAGGAC----------ATCCCAAAGGCTAGGTTGGTGACTGGGCTTTGTGCTTCT-TCCAAGTGAACCAACTGCCCT-GTCCACCCTAGGATGGTCACACAAATGCAGTCTCAGTGGACCACGCAGTTAACCAAAGTG--TGGGTTTTCCAATTCTTCCTTCTCAGAACCCCCCAGCACACGTGTGACCCGCCACCCCGTCTCTGACCATGAGGTCACCCTGAGGTGCTGGGCGCTGGGCTTCTACCCTGCGGAGATCACCCTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACAGAGGTTGTGGACACAAGGCCTGCAGGAGATGGGACCTTCCAGAAGTGGGCGGCCGTGGTGGTGCCCTCTGGACAGGAGCAGAGATACACGTGCCACGTGCAGCATGAGGGGCTGGCGGAGCCTGTCACGCGGAGATGGGGTAAGGAGGGCCTCGG--GGTAGAGCTTCTACTCAGGGCAAGT-GGAGCTCTTCTGGAGAATTTCAGCAGAGTCAGGTCTCAAGCCAGAGGCT---GGACCCTCATCCTCCCTCCCCTTTCCAGAGCCTTCCCCTCTGTCCACCATTGTCATCGT---CAGCATTGCTGCTCTGGTTCTCCT------CGTGGTCGCTGGG---GTGATTGGAGCTGTGATCTGGAGGAAGCAGCGCTCAGGTAGGGAACCGACTGAA-----TACTCTGTGTTTTCCTGTCCTGTTGGGGGGTT----TCCTAGGGAGCACGCTGTCCTGCCTTGTTAACGGGAAGTACCGTCCATATGCGGTTACTCTCCTACACTGGAG--CTGTGTACTCACACTCACTGT a score=25331 s hg19.chr6_ssto_hap7 1792167 907 + 4928567 GCACCTACTCTTTTGTAAAGCACCTGTGACAATGAAGGACAGATTTATCACCTTGACGATTGTGGTGATGGGGACCTGATCCCAGCAGTCACAGGTCACAGGGGAAGGTCCCTGCTGAAGACAGACCT-CAGAAGGGCAGTTGATCCA--GGACCCACACCTGCTTTCTTCACGTTTCCTGATCCTGCCCTGGGTCTGCAGTCACAGTTCAGGAAACTT-CTCTGGGATCCAAAACTAGGAGGTTCCTCTAGGACCTTATGGCCCTGCCTCCTCCCTGGCCCCTCACAGGACATTTTCTTCCAACAGGTGGAAAAGGAGGGAGCTACTCTAAGGCTGAGTGTAAGTGCGGGG-------------------CGGGAGCGTG---------------GAGGAGCTCGCCCACCCTATAATTCCTCCTGCA-CCACATCTCCTGTGGGCTCTGACCAGGTCTTGTTTTTGTTCTACCCCAGGGAGCGACAGTGCCCAGGGGTCTGA---GTCTC--ACAGCTTGTAAAGGTGAGATTCTGGGGG-TCTGAAGTGGGTGGAGGGTGGGGCAGAGGGGACAGGACTGGGTTGTGGGGATTTTTTGATTCAGAATTTTTGAGTGTGTGGTGGGCTGTTCAGAGTGTCATCACTTACCGTGACTGACCTGAATTTGTTCATGACTATTTTCTTCTGTAGCCTGAGACAGCTGCCTTGTGTGCGACTGAGATGCACAGCTGCCTTGTGTGCGACTGA--GATGCAGGATTTCCTCACGCCTCCCCTATGTGTCTTAGGGGACTCTGGCTTCTCTTTTTGCAAGGGCCTCTGAATCTGTCTGTGTCCCTGTTAGCACAATGTGAGGAGGTAGAGAAA-CAGTCCACCTCTGTGTCTACCATGACCCCCTTCCTCACACTGACCTGTGTTC-CTTCCCTGTTCT-CTTTTCTATTAAAAATAAGAA s canFam2.chr12 3938778 849 + 75515492 GCAGC------------AAACACTTGGGAAAATGAAGGCCAGAGTT-TTGCCTTGGTGATTCTGGTGACGGGGACTGATTCCCAGCCGTCACAGGACAGAGCGGAAGGCCCCTGCTGAGGACAGACCTCCAGCAAGTCAGGTGGTCCAGTGACCCCTCACCTCATGGCTT---GTCTCCTGACCCTGACCTGGGCGGTCAGTCAGAATTCTGCAGACTCACTCTGCA--CCAGGACTGGGAGCTTCCTCGAGGATCTCCTGGCCCAGCCCTGTGCCCGGCCTCTCACATGATGTTTTCTTCCCACAGGAGGAAAAGGACCAGGCTACTCTCATGCTGCACGTGAGTATGTAGGGAGTGATCCCTGAGACCCCGGGGGAGTGTAGACAGGACCCCATGGGGAGGTCAC---CCCCACAGCTGCTCCTTTAGTCTCACCTCCTGTGAGCTCTGACCACATCCTG--TTTATTCTCCTCTAGGCGATGACAGTGCCCAGGGCTCTGATGTGTCTCTGACAGCTCCTAGAGGTGAGACCCCAGAGACCCTGAAGTGGG-GAGGGTTGGGGCCTTGGGGACCTGA---------------------------------TGAGTGCGAGGGGGACTGTTGAGAATGTCAGCACTTA-TGTGACTGACCTCAGTTTGTACTTGATTGTTTTT-----CAGTGTGAGAC---------------------------CAGCTGCCCTGTGGG-GACTGAGCGATGCAAGATGTGTTCACATCTCACGTG-ATGACATCAACAACCCTGGCTTGTCTCTGCAAACAG-----------TGCCTGTGTCCCTAGGAGCATAATGTGAGGAGGTGGGGAGATTGGCCCACCC---TGCCCACCATGA--CCTGTCCCTAATCTGATGTGCGCTCTCTTCTCTGATGTGCTTTCCTGTCCAGCAGAGGGA a score=9058 s hg19.chr6_ssto_hap7 1802631 644 + 4928567 taatttaaaaattttaagttcttaatatattttaCTTTTGTCATCAAACTACAATTGCAATCACATAAATTATTAG----ATAATCTAATTGACTTTTTCTCTTGAAGTTGACATTTTTCTTTCAAATGGTATATCATATTTTTAAACAATACTATCTACTTTTTCCCCTTTGCTTTATGTATTTAATTTTATATATTAACTGATTCTTATTTTTCTACAATTAATCCAGCTTCTGT-AATTTTTAATATTTCCTCTGGAAAGGATAAAGATAACATTGACATCTCTGTTAATATATAAGTTATTAACGTCAAATTTCTGGGAAAAAAAGTTTATGTCCTAAACACTTA-CTACTCCCATTTCACAACTTCTATTAAAGTGAATATAAAAGGTTTGGTACAATTCCCTAATGCTCTTGGCATC-CCACTATTACAGAGTGCCCA----------AATATGCTTTCTAGTTTCATGACTTCAATTCCAGTATCTTTAGAAATATTTTTAATTTTCCCAAATGCTTATTTCATATGTAGTTGTGAATATAAAGTTTAGTGAGGCAAATATTTGAAGTAATT-TTTCATTTAAACATTTTACTGCATCATCCTGACATCACTGAATACAGTAACTTATATAGTACCAATTTAAAATATAAAGAGA s canFam2.chr7 36486451 598 - 83999179 TACCTTTAAAATTTTATATATTCAACAT-------TTCTGTTATTAAGTCACAATT--------ATAGTTTATTGGCATTATCCTTTAACTGACTTAATTTTATTAATTTGG---TTTTGCTTCAAATGGTGT-TAACATTTTTAA-TAATAGCTTCAGCTTTTTA---------TAGCCTACTTAATTTTATATGTTCAATCATTTTTAATGTTTGTTGAATCACTCAGTCCATGTGAATAACTTAAACCTCTTTT-------ATAAAGCTAAAAT----ATCTCTTGCATTGTGTA-----CTGAAGCCAAATCACT---CAAAAATGCTCATTTTCTAAATGTTTAACTATTCCCACTTCTTAACTACAATTTAAATAAATACA---GTCTTGATATAATTTCTAAA----CTGTGCAGCTCCAGCACTGGAAGCTGCTCATCAAGGTGCAAAGATTCTTCACATTTTCATTATTTCAATTCCCAGCTCTTCAGATGTACTAT-AATTCTCTTTGATGATCATCTCATGTGCCA--GTCAATTTA-----TACCGATG-AAAGATTTAAGACATTTACTTGATCTGTATCTTTTGACACCTTATCCAAGGATAACTGAATATGATGATCCATAAAATGCCATGGCACAACACCTAGAAA a score=1277 s hg19.chr6_ssto_hap7 1803629 172 + 4928567 TAGAACCATCTGTAGCATTGTGTAACCATTTCACATCAAAACCACTTTTCTT-------GAGCACTGATGAGTAAGTAAGCTTGATACATCATTTCAGTTCCTCAGATGAGCAAAAATCATTAGTTTTATATCATCAGTTTTATAAGTCTGAAATTTAGTATTTAAGTCA--CTAATAAAA s canFam2.chr7 36487110 161 - 83999179 TACAAAATCCAATGTTTTAATGTAAATATTTCTCACTGAAACCATTTTTTCTCTAACAGTAACACTGA-AATTCAATAGATTTCAGATGTTATTCC-----TTCTGA----CAAAAAACTTTAAACTACTATCA----------AAGTCTTGCATCTTACATTTTAAGCATACTATTAAAG a score=2566 s hg19.chr6_ssto_hap7 1804108 481 + 4928567 TTTTTTTGTTACATAATTGAAGCTTTCTTGGTGATGATTGA-------TTGCCTAGATTTATAAATTTACTAAAAAGTTGTCTCATCATGGTAGATATACGTTTTGTGACCATTGTAACCATTAATGTAGACTGCAATGATATGCACTATTTACAACCTTTTTTAAGACTCTATTTAGCAGTAGA------CTAATTAC---------ACAGTAGGTAATATTAGCATTCTAATGGTACTTTTTCAATGTTTT-GTTCTTTTTATGATACAA----AGTATTTCAGGGGATTTATTATTTCAAAGACTTCATTATGTGAAGCTCATTCATAATATTCTTCAAATTCTTCTTATTACTAGTTTTTCCCTGAATTCTGAGCACCGACAATA------TGCTAGAACATT--CACCTTTTCACACATCCACAAGATGTGTGCTTTGCATATCGTTTTCATTTAATATTTACATTTCA-----------------------AGCAATAATCAGCTACCTGTGAGTTTTGTCAAAATTATCAGG s canFam2.chr7 36487271 495 - 83999179 CTCTGATATGAAATAGATGGAGTTTCACGAATACAGATTAAAATGTTACTGCCTTGTTTTGTAG-TTTAGTAGAATGCTGTTTTCTTAT------TTCACCTTAAGTTTCCATTGCAGC-----ATGT----TGTACTGATAT-----ATTTTTATGCCCACCTAAG----TATTTCATGATTGAAAATGCTCAATTATTTTTAACTAAAAGCAGGCAGTGTTAAAATTCTGATCGTACATTCTAAATGTTTTAGTAACACTGATGATAAAATTGTAGT-TTTTAGG----------TTTTAACTGCTTCTTTATGTGAAATCTACTCTACATATC-------TTATTAGTAACACCACATTTTCCTTGAGCCATGAACTTTAACAAAACATGATTGCTACAGGATTGCTACATGGTTAAATATGTAAATGTTTAGCACTTCCCA-ATTTTAATGATACAACTTTTGAGCTCCATTCGCACCTGACAATATGGCACTAGAAATAATAAGGCAGTCATATTTTTTCTTGAAATAATCAAG a score=4068 s hg19.chr6_ssto_hap7 1804900 203 + 4928567 CAGGTTTTTAATTAAATTTTAGAAATGTGAATTATTG--TTTCCTTTGAACTGAATCTTATGCAATACTGAAAGCATTCCCACCTGCCATAATCTTTGCATATCAGTTGTTCCAGGCTGTGATTCAATATTAATACCATTGGTTTCATGATTTGTCTCAGATTCAGAAGAGTCATGTTTACAGTATCTAAAAGCAATGTTTAAAA s canFam2.chr7 36487766 164 - 83999179 CTGTTTTCCA------TTCCATAAATACAAATTATTTGTTTTATTTTGTATTCATTGTTGCACAGTATCAGGAGA--------------------------------TGTTCCAAGCTGCGGTTCATTATTAATATCATTTCTTCTTTGTTCTCCTGCAGATTCAGAAGATTCACGTTTA---TGTTTAAAAGGAATGTTAAGAA a score=4703 s hg19.chr6_ssto_hap7 1805806 205 + 4928567 ATGTATTTAAACTTTGTCA---CTTCACTCTTACTGTT----------TACTATTCTAAGTTCTTGAATTTATAGATATCAAAACACTGCACAGT-----------------------------------------TATTATTTCCAGATGAATAATAACACAATAACAATAGAAACAAGG-AAAAGCCAAAC-----AAATATACTATTTATAAGTTACAGCATGTGAGGATAACAATTAACTGATGATTTTCCTAAACCACAA s canFam2.chr7 36487930 259 - 83999179 ATGTATTAAAACTTTGTCATCTCTCCATTCTTGATGTTCtatttaatattttattataaattattaaatttataaatatC--AACTCTGCACATTAGGACTGATTACATAAAAATTATGCACAAAAATAAAACCAAAATAATTACTAACTACAAAAGAGCACATTAACAATAAAACCAAAGTAAAAGCTAAACTATTTAGATGTAGTAATT----GCTACATAATTCATACATGATGATAAACTGGTAATTCTTATAAAGTACAA a score=4230 s hg19.chr6_ssto_hap7 1808100 104 + 4928567 TGCAAAGCAGGTCCC-TTGGGGTCACCACCTGTTGTTCACCAGGGCTCAGGATAAAAGCCAGAATATCGCATGCTATGGGTTAAGAAATAGGCTTTTGAGGGAAT s canFam2.chr1 100133083 105 - 125616256 TGCATGACAGGCCCCATCTGGGCCACCACCTGTCAGGCACTAGGGATCAGAATGGATACCACAGCATCACATGGCATGGATTAAGGGATATACTTTAATAGGAGT a score=4910 s hg19.chr6_ssto_hap7 1841123 127 + 4928567 AAAAAAATGGATAAGTAGAcagaaaaatcgattaatacagaagctggcaaaaactagtaaagcaaatatggcaaaatgt-agaatttgttgaatcttt-----cagtatttgggtgtttattgttctttttct s canFam2.chr12 3369028 125 + 75515492 aaaagaatgg-taggtatacaaacagatggataattaa-------gatagagacaattaaggcaaatatggcaaaatattaagatttgttgtatctttggacttagtgtttgggtgtttattatccctttttt a score=42286 s hg19.chr6_ssto_hap7 1841272 894 + 4928567 aaaaGTTGCAAATGATTTCCATATTATTCTGATTTTTACACAGTAACAGAAAACATTCCTGGCTGCAGCTCATTAATATT---TCTTCTTTGTTCTCCTGAGGAATCAAAAGATTCTCATTTATGATATGTCAAAAGG-CACATAAAGAAACATATCCAAACTTTGTTGTCTCTTCATTCAAGTTTGGCtttaatattttattaaaaatttttgtatttgtaaatattaaaaCACTGAAACTTGCTACTGACACAAGAACGACAATGCACTAACAATAAAATCAAAGTAGAAGCTAAACTATTCAGAAGCAGTAGCAACTCCATGATTCCAAGGTAATTTAAACAGGCAATTTCAGAGTGCTTCAAGATGAAGGCGCAAAGCAGCCTCTCAGCCTGCAGTGATGCTACGACACCGGCAGATGGCGCTGCAAAGCTTCTCAAATGCAGCGGGAAGTCCATTTACCAACGGCTGTTGCGATCTCTTAATTAGCTTGAACT---GAGTTTGTATTAGAATTTATAATTTTTACTGCATATTGCAGTTACTCGTATATTACTGAC--ACTGGAACAGACatgttttaacaaactggttgagccgtatcagtgcgaaccagctgaatgtcagcgctgttccctcctgtga---cagaagccacc-ggcgcctgcctgagggcactcccctcactgggactctcagtaccacgcccacctgtccccaaggtttgtttcatcactaagccccaccttccagcattttca-cctttctccttcacttgatccttcttcctaacatcgtgttaacacactccaaact----------------aaaaaagttcctcaactgcatatactctgctccctccatttttttctttcattgcaatcactgccaaacattttgaaaattctctcctca s canFam2.chr12 3369674 856 + 75515492 aaaaGTTGGAAAGAATTTCCATATTATCCTAATTTTTACACAATAATGGAAGACATTCCAGGATGCATCCCATTAATATTATCTTTTCTTTGTTCTCCTAAGCAATCAAGAGATTCTCACTT-TGATATTTCAAAAAGACACACTAACAAACATATCCAAACTTTGTTGTCTCTTTACCCAAGTATGGCtttaatattttattaaaaattcttgaatttataaatattaaaaCACTGCAATTT---ATTGGCACAAGAATGACAATGCACTAGCAATAAAATCAAAATAGAAACTAAACTATTTAGAAGCAGTAGCAACTCCATACTTCAAAGATAATTTAAACAGGCAATTTTAGAGTGCTTCA---TATATATAAAAAGCAGT-TCTCAGCCTGCAGTGATGCTGCCACATGGGCAGATGATGCT---AAGCATCTCAGGTGCAGCAGGAAACCCTTTAACCAATGGCTGCTGCAATTTCTTAATTAGCTTGAATTAATGAGTTCAC-TCAGAATTTATTTTGTTTACTGCTTACTGTAGTTACTCTTACACTACTTACTAACTGGTACAGAAGTGTTTTAACAA-CTGGTTGAGGC--------------------AGTACCGGTACCGTTTCCTTCTATTAACACAGAAGCCACTTGGCTCCTGT----GGGCA--------------------GGGACCACATCATCTGCTTTCCAGGGTTTGTTCCATT-CTAATTCCCACTTTCCTGCATTTCCAACTTTTCGTCCTCACTTGATTCTT------AACAGCATGTTATAACACTCAAAACTTaaaaaaaaaaaaaaaaaaaaaaGTCCTCAATTCTATATA-TCTGCTCTCTCCACTGT---CTTTCATTGCAAATACAGCCAAATTTATTGAAAATAATATCCTTg a score=8266 s hg19.chr6_ssto_hap7 1842166 298 + 4928567 cctccactgcctttacgcttttcctccaaattattccttaaccctctgacatctggggcttctgattccacctctccaa-agaaatgctcccaccaagaccatggaggcccctctcgtt----gctggtggatactcgttcattttccccgccaccacccatcagcagcgttccacgccgcccttccttccttccttcctcccctagctt-catcacaccacgttactaggtttttcctgtctcactggctc--ctttccctgctctcctttttat--atgtttcctgctttcttcctcagccttctc s canFam2.chr12 3370724 281 + 75515492 CCCCCACTGCCTCCACTTCCTTCCTCCAAGTCATTCCTTCA------------------TTCTGATCTCACCTGTCCAATGGAACTTCTCCCAACAGTATCACCAAGGTTCCTTGTGGCCAAATCTAGTGACCACTC-CTCATTCTTGGGGTCCTCACCCCTCAGGGGCATCCCACA------TTTGGCCCTTCCTTCTTACCTGAGCTTTCATTGCAC-ACTTTCCAGGTTTCATCCTGTCT-GCTGGCTTTTCTTCCCCTGCTCTCCCTTTGATTTCTGTTCTCCACTTTCTTCCTTAGCCTTCTT a score=31492 s hg19.chr6_ssto_hap7 1842464 776 + 4928567 tgctccccacacctatatgttgatgatgcccaaatctctgtctccagccacgacctctctttccccaagctccatttgcataaactgtctctgatgagatttagggcgcttacggtggtatggctgtagacaactgtctcaggaaacagacccatgacccacccagttgccaagtcagaaacaggatgtatactcttgacttgtctctctccc----ctacacagcaaaacaat-cccaagacatgtcaattctatctcctgagcaacccataaaacgatttctcttctttccatcttccattaccctaattctggtgttcattctctctccctgggatggctgtaaaagcctctgatttctc--ccctttccaaaccagtctccacactgcaaccatagtgatctaaggcacaattctcaccttttcagtcttaggcttaaagttc---aacatccctctggatacagtctaaatctttaacacggctgaaaaggcccagcaagagctggaccaagcccacctctccagcttcacctttcctcatttctcctttgcaccctctgcct--------ctgaacaagttacagtcttccaaagttgtcatgtttcttgacctttgctgtctcctctgccc---agaatgcaatttccct------gtctggctaactcctgtccagcattt-ggcctcagcatggacatctgttcctctaggacgcttcccctgattcaccaagaccagcttaactgcccctactggctgttcctatagcaattctttaccacagactactgattt s canFam2.chr12 3371182 724 + 75515492 TACTCTCCTTCCCTG-ATGTCGATGCCACCCAAGTCT--GTCTGCAGTCAGGACCCCCTTTCCTCCAAGCTCCACTCAAATAAACC-----------------------------------------------CTGTCACAGAAAATGGCACCATCACTCACCCAGTTGCCAAGTCAGAAACAGGGTATGCAATCTTGACTTGTCCTTCTCCCTCCTCCACACAGCAAAACAATTCCCCAGACAT--TAACCTTATCTCCTAAGCACCCCATAAAACTGTTTCTCTTCTTTCCATCAGCCACTACT-TAATTCTAGTTTCCATTCTCTTCCCCTGACATCACTTCAAAAGCCTTGGATCTCTCTCCCCTTTCCAAACCAGTTTCCATACTGCA------GTGATCTAAGGCACAAATCTCTCCTTGT---TCTTAGGCCTCAAATTCTTCACCATTCCTCTGGATAAAGCCTACATCTTTAGCACAGCTCACAAATTCCAGCAAGAGCTGGCCCAAGCCTCCCTCTCCTGCTTCACCTTTCTTTACCTGTCCCTTGCACTGTAAGCCCGAGTCCTGCTGAATATGTTG--GTCTTCCCAGtttgtcatgt------------gcttcttcctagaccttatggaatgctcttgccctcttaatgcctggctaacccctgctcagtcttcaggcctcagcttggacctccattcctctagA----TTCTTTTGACTCATCAAAACTGGCTTACCTGCTCCTGTTGAGTATTTTCAAACCAATTATTTACAATAGACTACTGATTT a score=-253 s hg19.chr6_ssto_hap7 1843406 53 + 4928567 ttttttgtaattgtgtttccattctccaataaattgtgagcgccacaaagaac s canFam2.chr12 3371906 17 + 75515492 TTTTTTGCAA------------------------------------AAACAAC a score=9423 s hg19.chr6_ssto_hap7 1843568 309 + 4928567 TTAGTTATGACAGTTCAATAGAAACACGTAAAATAATGCTTTTATAGTTTACATA---CTGCTATAGAGCTATTGTATTATATTATTATTATTCTATTCCTACC---CTCTATTGCTTGAGAGT--AGGATATTGCCTTATTCAATTTTGGTTATTGTCCCAGAA--CTCAGGGATATATGTCT-GGCATATATTGTTTTTAACCAATTTTTGTTGACTGTATCAATGATTGTAAGAAGT----GAACAAAGGGCCAGATAATTGAACTATCCTGGACCACACACAGCTACCCTGTTCCAGAAGCAGGACTATAATCCCATCTG s canFam2.chr12 3371923 293 + 75515492 TTCGTTATGA-AGTTCAATGGATACATGTAAT------------TAATTTACATAGAATTATTGTAGAATT----TACTGCATAATTATTGTATTATAAGTATCTAGCTCTTTTACTCGAGGGTTCAGCCTAT-GCTTTATTCAATTTCT----TTGTTTTAGAAAACTCAG-----CATGCCTTGGCACATATTGCTTTCAATTAACTTCTGTTGATT----CAGTGATCATAAGAAATTAAAAAACAGAGGCCCAGATAACTGAACTACCCTAGAGTACACACAGCTATCTTATTCCAGAAGTAAGATCAGAACTCAGTCTG a score=3569 s hg19.chr6_ssto_hap7 1843877 90 + 4928567 GAAAAAGGGAAACTTGGAAG-----TTGACATCTAAATGAAATTCCAGCATGGATGAGAGAAGCCCTGATTTCTCTCCATCAAGAGACTAGCCAG s canFam2.chr12 3372432 80 + 75515492 GAAAAAGGGACGCTTGGAAGGAAGTTCAATGTCTAAATAGAGTGCCAGCA---------------CTGACTTCTCTGCACCAAGAGACCGGCCAG a score=47711 s hg19.chr6_ssto_hap7 1843967 1300 + 4928567 CTATGGAAGCCACCAGAGCCCCAGACCTCCATGGTCAAGTATTCACATAGTAGACATGACCCAGACAAGAGGG-----------------TGCGTATTTCAGCGTGGAGGGGAGACTGGGCCCTTGGTTTCCTGTGTCT-TTGTAGTCAGTTCTAAC-CTCAGCCTCAGGCACTGGT----GTTGGGGCCCTATTCATCCTCATCTGCA---CGTCCCTC--------AGTTCTTTTCCTGTTGCTATTATCCTATAGAGTCAGCAAGTCATGGAAGAGG---------------TTTTACAGTCTAACCCTGTGGGGGTGTCAGGAGTTGCCTCCTGCCAGGTCTTCAGCATAAAAATCCCCCCTCCTCAGCTCCC------AGTCAATTCTTCATCCCCACCCCTAGACTCTCCCAAATACCCCTGATGAAACCCCTGAGGTGGAAAAAGATAAAGACAAGCAAAGATAAACAGCACAGGAAGCAG--AGGTACAAATAGAATTCTGATTTTTCTCCTTTCTCTCCACATTTTGAGGAAATGAATCCAATGTCCTCACCCCACCTCCTGCAGCGGAGAAGTCCCCTGAGCATCTCTGAACATCATGAACCCTCAAAGTAAGCTTAGCTTGGGCCCCTTTTCCTTTTCTATCAG------------TGAGGCCAAAGAGCCCCAGATGGGAGACAGGTGGATTTTTCTCTCAGCTGGGACCTTTTCTCTTTCTTGTCTAGCACATTTTGGGAAACCTTCAAGTACATTCTCATGCTGGTATTATTTAAACTTTGCACTGGAGTG--AATTCCAGGAGTTATGTCCACACTGAGACCAATGGAGA-TGAACCTAAAGCAATATGT------------GGCCAAACACCTTAGCCTCTT-TAAATATACTTT----CCTTTGCTCCTTGGTTAACAGGGTCTGTCTGCTCGCATTAGAGAAACTGCCCAGTGACTCAGATCCTGAAAGGATCTGCTTTAGAGAAAAAAGGAG---TCTGGTACTTC----------TCACTCC---ATCTAGTGG----------GCAACCTGTCCAACTA-CACTTTTT-GCTATCATCCAATACAGACAACACTG--GCAGTCAATAAAA--AAGCTCATTCTCCCATTTCTAAAAGAATTCAATCTAGGAGTCTAGCTGCTGGCTTAACAAAGGGATATACAGCAAAGCCTAAGGTGCCCTGACTCACGAGAGAGCTGATTTCTGCCGAAATGCTGAGGTGAAACCCTAAAATGGTTCTGGCCACCTGCTAGGTTCTAGCTCAGACCCTGCACTGGATCATCTTTGTTCCACCCCCAAACCAGAGTAAATGGAATTCAGGAGGCTGGTTCTGTGCCCGCCCCTATGTACCTCAAATACTCGTAGC---TGCCAAGCTTTTAA s canFam2.chr12 3372840 1375 + 75515492 CAACAGGAACTGCCAGGGCCCCAGACCTCTATGGTCAAGTATCCCCATAGTAGATGTGACCCAGGCCAAGGGGCATGAGGACAAGGGTCTTGGATATTTCAGCATCG----GAGATTGGACCCCTGGTTTCCTTTGTCCCTTTTAGTCAGTTTCAACACCCAACCCCAGGCACTAGTTAGCATTGGGGTATTATCTGTTCTTCTCTGAAATCTGTTTCTTGCTAAGATAGTTCTTTTCC-GTTTCTCTT-TCCTACAGTG--AGTGAGTCACTGACAGGGGCCTGAGAAGAATCACTTAACAGTGCAGCCCACCGGGGCTTT--AGAGTTACTTCCTTCTAGGTATTCAGCATAAACATCTCCCCTCTTCAGCTTCCCTTCCAGGTCTCCTTTTCAGCCCCACAAACAGACTCCC---AATAGCCCTGGTGAAACTCATGGCACAGCCAAAGATAAAGCGCAGAGAGGCAGCACTGCAGAGGAGGCAGGGAGGGACAGGTACAATTCTCATCAC-CTCCCGTCCCTCCACTGTCTGAGAACAC---TCCAATGTTCCTACTCCA------GCAGCATATAAATCCTCTG--CTTCTCTAAACATCATGAACCCTCAGAGGAAGCTGAGCCTGAGCCCCTTTC----TTCCATCAGAAGAGTCAGCCTTGAGGCTAAAGAGCCCAAGATGGGAGACAGGTGGGTTTTTCTCT-AACTGGGACTTTTT-----TCTTTTACCACACATTTTGAGCAACCTTCAAGCACATTCACATGCTGACAGTATTTCATCTTTGTACTGCAATGGAAATTCCAGCACTTAGGTGCTGACTGGAACCAATAAAGAGTGAGTTTGGGGGACTGTGATCAGGCTTCAAAAGCCAAACATGTCAGCCTCTCCTAAATATACTTTATTTCCTTCACTCCTGGATTGACCAGGTTT--CTACTGGAATTTGGAAAACTGCCCAATGACCCAGATCCTGCAGGGG-AGGTTTTAGAGTGAAGAGAAGCAATCTGGTACTCCCATCTTCTCCTTACTCCTGCACCTAAAGGCATAGGTTTCTCAGCCTGTTGGACCAATACTTTTTTGCTACCATTTAACTCAGACAACACTGTGGCAGCCAACAAAACAAATCCCATTCTCCCTTTTCTCCAATAATTAAGTCTAGGAGTCCAGCTGCTTGCTTAACAAAGAAGTACATA--AAGTCTTAAGATGCCCT------CAATAGAGCTGACTGCTGCTGAAATGCACAGA--ACTCCATAAGATCGTTCTGGCTACCTGCTGAGTTCTAGCTCAGATCCTGCACTG-ATCATCTTTGCTCTATCCCCAAACCAAGCTAAATGGGATTCAAAATGCTGGCTCTATGTCTTCCCCTATGAGTCCCATAGACCTTTAGTGCATGTGGGTCTTTCAA a score=139759 s hg19.chr6_ssto_hap7 1845267 2389 + 4928567 ACAATGAAACTTAACACTGTACTTAAAGGGCTGTTCTGCTCAAATCATAAATGTGCACGCTAGTTGTTCACCAGTAATTAAAA--CTACTCGTACACATTTAATCAACATTTTCACAAGCGTTTTGCCTTAACTAAAAATTTGTATCAACATGAAGTCCTAGAATTATACTGCATGAGCCCCCAGGATTTGGAGAACATCATTCACCCTTCTTAATCCAAAAACTTGGGTGCCTGAAGGTGGGGTTTTGATCATGGCCAGGCTTCAAATTTAGGTCAGGCTCTGGTGgtacatccttatatgcttggtgctca---gcacaggtcaagacacacaatagaccctcaataaatatttgctgaatTTGAACAATTCCTGTAAAAATCTCATTAAGAGACATCAGCTTGGGACACAGTTCCTCTCTTACTGTTCCTTCTCCCAGAAGCTCCTGGAATGAGC----------AGGTCTGGCGGCAGGGGGCA-CACAGGGCTGCTGCTCAAATCGGAGA--------ATGGCACAAACTCCAAAAGGGAGCTGGATTTAGACC-----------------------TCCCCTCCCCATGTA-------GATAACGGGATTCCTAAGGTGCAGAGTGGGAGAATGGGTAGAGGAAGCAGGTTTCAGAGACTGAGAACCTACTAAA----CTCCTAAGAGAACTTTCCCTTGC-AAAGAGAATGCATGAAAAAAGAAGGGAGAAGAGGAGAGAAGCCTCCCACAGCTGTTAGCCTGGAACAGCCGCTCTCACCT----------CAGTTCATCTGGGGAAGGGGCTACAAAGCAAACAATCTTTATTCACAATTGGGGTGGCAGAGGGGAGATACCCCCAGGTCAGTCCAAAAGCAAAGATACTGGGAGG-GAAGATGGCGCTGGGCGAGGAACTCAGCACTCATCCTCACCCAGCAGGGCATAAGGGTTTCGGCCAGCCAGGCTGGACCCTGGAGCCGAGGTTGGGGTctcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCCGTGGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAACCAAAACAAGAAAAAAATGGAGGAGAGTTTTGAGCAAGAACTAAAGCCAAGGAAAGATGGGGAAGAGGCAAAGACTAGGaataacaataat-----ctttagagctgctggcattcattcattcatccattcattcaacttcctatgtgcagattgctgaacagaacctttgtgcacatcaacttcaatctttacaatcactatgctaagggtcaattattaccctcagtttgcagatcaggaaaatatcac--agatgttaagtaaca--gagctagccaacaggtacagaatccaggtttgaccctctctctg----gccacaaagcccacacccttttacctacgctataGCAGGGGGCTGGGGAAGAATATCTGGGCTCTGACCTTTCTGTTCACTGTAGCCTGGGGGATGAAAACACAGGCTGAGGCGGCCGTCCACTGCCAGCCGCAAGAGACTGTTGGCTGCTCTGTACACATCATTCCGAGCCGCCTTGGCTGTCTTGTAACCACGTTTCTCTGCCCAGGCTGGAGGAAGAAAAGAATAATGGAAAGGGAAAGCATTAACCAGGTACCAGTTATACTCCCACTCCCATAACACAGTCCTTCCAGTTTTCCCCAAAACATTCCAGGCCAGAGATCTTACTGGCTATGCAACAAAAATCTAGGGGTGAGTGGACAGCAGCTTCATCAATGGCAGAATCTCTGAGGAGAGGAAAGGAGACAGGGAAGGGTAAAAGGCGAGGCAGGTAAGGAAGAGCAGCTGAAACCAGGTGGGGCGAAGCCAGGCACATGGAACTCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCCGCTGAGGGGTCCTCAGCCTCTGGGTGGCGCAGGTGGAGCAGGGCCTGCACGGGAATTCGGGAGGCCAGGTAGCCCACAGCAGTGTAGGGCTCCTGGATCTGGGCGATAGGGTAGATCCCTGCCAGAACCTGAGGGAA---ATGAGCACTCAGTACTTTCCTCAATGTCCCACCTTCTCTCTTTCCCTTACCCACCCTCCCCGTCATACCTGCAACTGCCTAGGCAGAAGAGATGGGAAGATGAGGCCTGGGCAGTCACAGAGCTTCACAGAGGGGGTAAGAAAGTAGGTCTGAAAGTATCGGGTATGGCCCGGGGTTCTGGAGACACTCACGACTTTCCGCCCCACCAGCCCATTGATCAGCGAGGACTTTCCCACATTAGGGAAACCTGAGGAAGGCAAGGAAAATTAACGTTTAACAGGTTTCTACTCTGTGATG--GGACTTGGTGCTATACCTA----------------TAG s canFam2.chr12 3374420 2414 + 75515492 AAAAAGAAGCCTAACAGTGTACTTAAGGGGCTGGTCCACTCAAATAATAAATGTGCACCCTAGCTCTTTGC-AGTATTTAAGAAGTGACTTGTACACATTTAATTATCATTTTCAGAAACATTTT--CTTACCTAAAAATTTCTATCAATAGGAAGTCCTAGAATTATAGTGTATGAGCCCCAAAGATTTGGAGAACATCACACACCCTTCTTAATCCAAAAACTTGGATGCCTGAGAATGGGGTGTTAATCATGGCCAGGCTGCACATTTAGGTCAGACACTGTCCACAcatctttatatgctcagtgtttaaaagcagaaatccagatgcatagtcagccctcagtaagtatttgttgaatttgaataaatCCTATAAAACGCTCATGCAGAGACAATAGCTCATCACAC-------CTCTTACCACTTCTACTCCAAAAAGCTCC---AAAGAGCTAGTAGACTCAGATCTAGCAGCAGGAGGCAACATGAGGCTGCTGCTCAAATCTGAGAGAGAAGGAATGGCACCAGCTGCATGAGGG--CTAGATTTCGACCAGGCCTCAAAGCCTGAAGTGACCTCCCCTCCCCATGTTCCATGATGATAATGGGATTCATAAAGTGCAGAGTGGGAGAATGAGCAGA--AAGTGGACTCTGGGGCCTTAGCACCCAGTGAATTAACCCCTAAGAGAACTCTTCCTTCCCAAAGAGAATGCACAAGGCAAGAAGGGAAAAGAGGAGAAAAGCTTCCCAGAGCTGTTGGCCTAAAGCAGCCGCTCTCACCTGTTCTCACCTCAGTCCATCCGGGGAAGGGGCTACAAAGCAGACAATCTTTATTCACAATTGGGGCGGCAGAGGGGAGGTACCCCCAGGTCAGTCCAAAAGCAGAGATACTGGGTGGAGCAGGTGGCACAGGGT-AGGGACTCAGCACTCGTCCTCACCCAGTAGGGCATAAGGGTTTCGGGCAGCCAGGCTGGCTCCTGCAGCTGAAGTTGGGGTGtcctcatccccttccccctcctcatctgcatcccggtcttcctctccctcctcctcacaggagctgctcagctcttcttcttcttcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCTGTGGTCTCTGGATGGGACTCCCAAGTGCCTGGGGAAC-AAAACAAGAAAAGAATGGAGAAGAGTTTTAAGCAGTAACTAAAGCCAAAGAAAGATGAG-AAGAGGCAAAGACTA--ACTAACACTAACATCGGTTTTGCAGCTGCTGGCATTCATTCACTCATTC-------CAACT-Cctatgtgctaagcaatgaacacaagttctgcatatgttaactctactctctaccaccaccttgccagggggcaactatcatcctggttttgcaggtcaggaaactgtctcggagatgcttagtaacacagagcaagc-ggcaggtacaggatccaggtctgaccctcattctgtgtggccacagagcccacaccctttTGCCCATATTATAGCAT----------AAGAACTCTGGCTCTCTGACCTTTCTGTTCACTGTAGCCCGGGGGATGAAAACATAGGCTGAGGCGGCCATCCAGTGCCAGTCGTAGGAGGCTATTGGCTGCTCTGTACACATCGTTCCGGGCTGCCTTAGCTGTCTTATAACCACGCTTCTCTGCCCAGGCTGGAGAGAGAAAAGAATAGCGGGGAGGGAAACCGTTAAAGCCTTGTCATCACCACTCT-GTTCCCGTAACAAAGTCCTTCCAGTTTTCTCCAGAACATCCCAGGCCACTGATCTTGCTGGCCCCACGACAGAAATCCAGGCACGAGTAGCCAGGTACTTCATCAATGGCAGAACCTCTG--GAGAGGAGAGGAGATAGGGCAGGGTAAAAGG-------------------------------GAAGGGGAGAAGCCAGGCACACGGAGCCCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCTGCTGAGGGATCCTTGGCCTCTGGGTGGCGCAGGTGGAGCAGGACCTGCACAGGGATTCGAGAGGCCAGGTAGCCCACAGCGGTGTACGGCTCCTGGATTTGGGCAATGGGGTAGATCCCTGCCAGAACCTGAGGGGAAACAAGAATACTCAGTCTGTTCCT-GGCCTCCTGCCTTCTCTCCCTCCC-TGCCCCCTCTGCCC-TCATACCTGTAACTGCCTGGGAAGAAGGGATGGGAATATGAGTCCAGGGCAATCACAGAGCTTCACAGAGGGGGTGAGAAAGTAGGTCTGAAAGTATCGGGTGTGGCCGGGGGTTCTGGAGACACTCACAACCTTTCTACCCACCAGCCCGTTGATCAGTGAGGACTTGCCCACATTAGGGAAACCTAAGGAAGGCAA-AAAACTTAATAGCGGACAGATCCCTACTCTGTGAGGCAGGATGCAGTGCTATAGCTATTGATAAAAAGGGAAGTAg a score=12034 s hg19.chr6_ssto_hap7 1847656 278 + 4928567 GTAAAAGGGGAACTAAGGCTCAGAAATTAAGGAAatggta-----ttgcagaatacaaatcacgctctgggctgccagggttaaatcctggcccttccacttaccagctttgtgatgtcagggcaactaact-----ttctgagcctctgtttcttcattttac-agtgtggacacctccctacctcagggtggtcaggattaaatgagataaccaatacaacttgtgtgggtcagtgcctgcagtacagtaagtacccagtaCCAGTGATCCACATCTCATAATTACT s canFam2.chr12 3377018 285 + 75515492 TTAAAAAGGGAAGTAAGGCACAGATGTTACAGAAGTAGTATAACCTTGCAAGTTTCAAATcagactctgggctgccatgattgaatcctggccccttcacttatcaactctataacctcaaggcaatttacttcacgttctgagactctgtttcctcatttcacaagtgcagataccttca-agctcagagtggtccatattaagtgaaa-aacaaatagga-ttgcgtggttcagtgcctgcagtatattaaatgcccaata-TGTAGACATGCAGCTCACAATCATT a score=13836 s hg19.chr6_ssto_hap7 1848253 427 + 4928567 ATGACTTGTCCAAGGAGAAAACTGGAAG-CCTTGGGGCTCACTGCCACTCTGCTCACT-CACCACCACCAGTTTTTGTGTTTctggc-----------tgactt-------------------cagtgccttcatctcccttccacagagcatctcctttaccccacctcagctgcccactcccatggtaatac-ctgcatcttgtcacttcacagctccaaagcctcaattccaagcacccctctctgccctgacaactcatctttccagctcacttactctggttactccatgccagtaagtctttgacc---cctgaccttaacacagtaacactatgcaatacccaactcgtgtcctcaatttccttcttacttgactcagatttcatgatccagctcctcagccagggccgttcacagacctggaactccctggtcccacttctcccctctatcttac s canFam2.chr12 3377303 438 + 75515492 GCAACTTCTCCAGGGAGAAGACTGGAAACCCTTGGggcttactgacattctcttcatgacacctccgtcactctgggggaccttagtatccgcacaggtggcctgttaagcacttgggcctcccagtgccagcatccgtcttccgaaggttattt-----------cctcaactacccactgccttggtcatactctggatcttgtcacttcacacctccaaaatctcaaccacaagcaccactctctgctgtgaca--------tcccagctcactttttct-gttcttcgattctgattactctttgaccctgcctctcgttaggaca-----actactccatactggactcatgtcctcacttcctttctataccaaccaagacaccatgacccagctctacagccaccccctttcacagaccttgaactcccaagtcctgtccgtctcctcaatcttac a score=10841 s hg19.chr6_ssto_hap7 1850823 435 + 4928567 ccccagtactttatcctggctcccatactccaatcccctgggcactcttgctggtcctagaatctccaagcccattccctcctcaaga------------------------------ccctttccccacagttctgaatggctcacttcatctcatcatccagttctctcctcagggaggttttccc-tgagcacc-tctcctctcagtcactctctatcccctttcattgctttattgccttcactgcccctacat-----gatttcggatcacaaaatctatttactcacaagaaaataagctccatgaatctacagacctttttgccatttccacagcagtatgtcccatccctagaa----tatctggcacctggttaagtgttcagtacatatttgttgaatgggtaaatGAATGAGAGCTGGAGGGAAATCCAAACTCAGGGGTGCCTGTGCCACAGCAAACACTCTCC s canFam2.chr12 3377741 411 + 75515492 cccccgc------ccatggctctcatctcccaatgctctga-cactctggcttgtcccacaatcaccaagtttgttcctacattgagatctcatttaccgatcccttggcctggaaggcccttttcccgtatctccaaacggc-aacttcccctcaacattccaggctcttctcagagggggcttcccatgagaaccctcctctctgggtcactctctactccctttcattgc-----------------ccctaaataataggatttcaaattcatgaattagtttacttccaaggcaataaactctgtgagaatagggacttttctgccactttcatggcagcataacctgcccctgtaaacagcacctggcacat------------aacaAATATTTGCCAAT----------------------------ATCTAAACTCAGGACTGCCTGTGCCACAGAAAATGTTCTCC a score=1079 s hg19.chr6_ssto_hap7 1851258 66 + 4928567 CTCTC---ACACCACCTGGAATAGAGATCAGCTAGAGCAGAGGCTGCTAAGAGAGGGAACAGAGGCTCC s canFam2.chr12 3378312 69 + 75515492 CTCTCCCTATATCACTTTGAACATAGAAAGGTTACTACAGAGACCTGAAAGAGTGGATGCCCCATCTCC a score=18943 s hg19.chr6_ssto_hap7 1851354 573 + 4928567 GGGAAGGGACAGCCGGGT-GAAATGACTGGAAAGAGGAGCAATCACTCAGCAGTAAGGCAGGTTCTTCCAAAGACAAAAAGGACAC--AGAGATAAGTCAGGG-CACTTCCAAGGAACCCAACTACCTACTCCACACTCCCAAATTTATTCTGGGTTGGGCCCTTTTTGGTTCCAATATCACCTCGGATACCATAACTT-GTCCA--------------------------------------AGGTCTCTTCTTACCTCTCCCACCCTAAATGAAGACGGGCCCTGGGTCCTAATCATACATTCCTTTTTCCTCCACTGTGAGCTGAGACAAAGCCCTT-------AAGAGGAGATTCTCCTTGGCAACAAACTTAAAGGGTTAAAACCTAGAAGAATACTAATTCTTGCTGAGCTCCTACTATGATTTgataatcactgtactacagactaattactacaattcaaatggtttatat--aaaccacttaaaaca--------------------------------------------gtgcctgttacatagtaagcaccatataaatactgagttttaACaataataattgttattattgttatcactatttgtcaggcattcttacactctcttaacactattcccatcattcctcacatccat s canFam2.chr12 3378411 642 + 75515492 GGCAAGAGAGAACCAGGAAGAAAGGACTGGAAAG-GGCGCCATTTGTCAGCAGTCAGGTAGGTTGTTTCCAGGACAAAAATAAGACTGAAAGGTAAGTCAGGAATGTTTCCCAGGAGCCCAACTAACTACTCTATTCACCTTAATTT---------------------GGTTCCCTTATCACTTCAGATAACACAACTTTGCCCACTTCACTTCTTCTCCTTTTTTTTTTTTTTTTTTTGCCCACTTCACTTCTTAACTCTCCCACCCACAAAGGAAAGGGGCCCTGGGCCCTAATTCTACATTCCTTTCTTCCCCACGAAGAGCAGAGACAAGGCTCTTTTTAATTCAGGGTAGATTCTTCTTGACAACAAACTTATAAGGATAAGACTCAGAAGA-TACTGATGGTAACTAAGCTCCTGCTAGGACTTAACGGTTCCTCTATTACAGATTGATTACCATCAAAGAAACAGTTAAGATTTATGTCATTTaaaaaaaaaaaaaaaaaaaaaaaGATTTATGTCATTTAGAATGATGCCTGGTGCCTAATACCTGGTAAGCACCATGTAAAT-TTCAATTTTAACAATCATGATTATTACTAAT---AACactatttgataagtattattaggccctccctgtgctattgtcttcattccttacgtcctt a score=312300 s hg19.chr6_ssto_hap7 1852229 6141 + 4928567 tcttttactcaggtatcaatgtccttatttttaaaatcaaagtaactaagactcagagtagcaaaatcacttactcaagacctcacagctgagaagaggtggaatttaactca-ggctgtcatgatccttccactgcagcagacgcctcttctgCCTTGCCCACCGCCACTGGCAGAGATCACCCCTCAGACACCCTGGGGCCTAATGAGACCTGATCGCCCTCTCTCTTCTCCGAATATGAAAACTCTGTACCTCCTTGGAGGCCACCACGCACAAGCTGCCACTTCCTTACCCACACAGCCGATGGTCACCACCCCATCCTTGTAGCGCTCTTGGGTTGGGCCAGTTGGCTCCATTGCTGAATCAGTCTGCTGCTCCACCAGGACTGCTGGGCCATCCTCCTCTTCCTCCTCCTCCCCAGAGCCATTACCCCAGGTGGCCCCAGCCACATCCCGAGCAATCTTCTCCCGCCAGCTGCTCAAGTCCACTGCTCAAAGAAGGAGAAGAT--TAAAGAGGTTCTCCCCAGGGCTGCTGTGCATGATGGCACATACTGTGCCCTGCACAGattatgtaactggcaccctctggagttgtacagtgccaacctaaataaGAGCAGGTCAGAGAATCTCCCAAAAGTCATTTGACCCTACCCTCCCTGGAATCACGCACGTTTCTCTGAGCTTCTGAAAAGTACTGGGAAGGCTAAAGGCAGCAAGCCACTGAGGCTCCTGACTACCTGCTGCCTCTCGTCCCACCAAGTCAGTCTGCTCCTTATTCTGTCCCTTCCCCTGGCCTCTTGCACATATCCACCATAGAGGGG-TTGGCTTCAGGAAAGGTGAGCAAAATGATTCTGCATCTTTGG--------TCTCCCCCATGTCCTCCTACAGCCCTCCTCTAAGGGCCACATACCTTTCCCCACAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGGGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAAGACTGAGATCAGAGGGCACAAAAGGATGGGCACACGGGCTTAGGCCTCTCATCTCTCCCACCACCCTTAGGCCCAAGACCAGGTGCCCCCTTGTCAATAAGCCTCTCTGTTCTCCCT--TGTCCCCTGCCAACTCACCTCTCCCAAGTTGCCCTCTCTCATTGCCCACTCACCACTACTAGGATCCTGTGGGGTGCGGGGGTCCCGAGGAAAAGAGGTGAAAAGGACGACGTGGAGCTGGGGATAGTGTTGATGGAAATAATGCTTCCAGGCAACCACAAGAGCTGGCGGGGCCAGATCCACCTTGTTCAAAACCAGCACCAGGGCCAGTCCAAGTTCTCCAGTCACATACTCATAAAGTGCTGGCGGGAAATTCACAACCTAGGACAGAGTTGATAAGAGGATGGAGCAGTGAAAG-TCAACCCAGAGTTCTCTGCCTCCAGCTCCCCACTCAGCAGGTGTAGCTCAGAGACAAGGCCCTGGTGGTAGCAGACTCTGGGCTAAAAACTATAAACCAGACAAACTGAAAAACAAAGACAAAACAGGGGTTAGTAATACTTCTGA----GTCTCAGAGGG-CTTCCTATAGGTCATGATTAGAGATGGAAATGAACCCAAAACAAGACAAGGAAACAGCATCACTTAGCACACTGAGGTAAAGGCTGGGATCGGAAACAGGGATGGGGGTTAGGGTAGAAATTAGTCTGCTTTTTTGTGTGTGCACAACtatgtaagtgtgtacacgtgcatatatgcatgcatgcaagtacgtgcacatgtgtgcatgtttgtg-tgttaa--tgtgactgtgaacatgtgtgcaaacatgcctgtgtatattgatgtgcacatgatgtacgtgtgagtatgtgtgtgtacatatTATTAAGGACCTCCAACCTAAATG---------------------------------------------------------------------------GTCCTCACAGACCTCCCTTTCTCCCACTGGAGGACAAGAGTGaagttgcagagctaggattcacac-agggcagtccagcagc--agtctacagccttaactactactctaGCATTCCAGG------TGGGTTCTGTAGCAACTGATGTGGCAGTGCTAGAGAAATGAGATAAGGAAGAAAGGGCATCTTTGGGCTGGGCAGGAGGAAGTCCCCAGCTGCATTCATAGAATCCC-TGGAGCTCCAACACTTGGATTTTCTATTGGT----CTGTGATGAGCTAAAGGACAGGACATGGCTGTTTT--------GAAG-AGAAGAGTGAGCTGGCCAAGGGAGGAATGACAGGCTATAAGA-----GAATAAAAAACTGAGTTCCTAACTGCGGACATCAGCACTAGGTAGA---GATTAGAAAGACAGGAAGATAGATACCTCTCTGTCTCCCAACTCTTGCCTCTGACCTTTGCCCCTGAAAAACCTTTCTCCCTC---CTCCTTGCCCACCCTTATCCCTAGTACTCACTGGATGTCGGATATCAGTGATAAGCAGGACGATGTCAGACATCTCTAACACCCGCCACAGCTGCCTCCATGTCTAAAAAGACAGGATCA--GGAAGAGAAACTGAAAACAGAGTCCCTCTCCAGCCTGATCCCAAACCAATTTGACC-ATAGGTCACTATGCCCCACTCCTGTCCCTAGAGTACACTGTCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCAGAGGAGTAAGCCCCATGAATCTTCCCAAGATAGTCTTGGAAGCTCCGTTCCTCTTGGCTCATTAGTTGCTCCTTGGACATCTCATAGCTCCAAGGAGGACGTCGAGGAAAGTCCAGAACTGGGAATTCAGGAAAAAGTCC----AAGTGTGAGGAAATCTTCAGGATTCAAGAGT----ACATCCCAGACCCCTCCTTCCTCACAGTCGGCTTTTACCTTTCCAAACTCCTTCCC-CAGCCCAATGCCT---------------GTCTTGCTCTCACTCACCTGAGCCAGGCTGATACACCTCCCGGATGTCCAGCTCCAACAACTCAGCACTGACCGGCTGTAGAACTTGCTCCCGGGCTGCTCTCTTTCTCCTCTCTACCTCCTCCCTGCTGTCTCTCTCAAAATGCAGTCGGTATCTAAGGGAACAGGGACCGAGACATCCAGAGCAATCCTGTGGCCACAAACTCCTATTTTCTCCCCTCTTGTACAATCAACTTCGCAAACCATTCTCTCCAGAGTCGTTCAAGTCTCCTCTCTCAAGTCAGA-CTTCCCCCAAGTCCTTCTTTCAGGCAATACTCAGCCTTCTCCTTCTAAAAGCCC--AACTCTCTCCAGCCCCTCTGGAAAGGAAGACTGTGGCCCGCTGTGGGGAGCCGAGTGGCTAGCGGAGAACTGTGGCATCCCAGGCCCAC-CGTCTTCACCAGTAGCAGCCCGCTTTCCCCCAAAGCTCTGACTTCCGGGTAGGCGGGAAA------GCCGGGACCAG------CGCCCCCTCCCACCCTCACCGATTTGGGTCGTAGCCTCGTGGACCCAGCCCCTGAGAAGGCTGCTGGTTAAGCCTGCGGATATGATGGGTCACAGACTCCCCGTCCGAGGTGTCGGTCTGTTCCTCTCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGCAGCCCATCTTGAAGCCCTGCGGGGAGGGGCCGGTGACGCCAGTGCTGGCCAGCTCTCAGGGGCCATAAGACCCTCTCCCCCATCGGCCTGACTCCCTTTCATCCCACTCAACTTCTTCCGATGTTCAGTCCTCCCAGACACCCTATTTGGGACCCTCCCGGATGTGCGTGGGGGGAGTCACTCCTT---CAGGGAGCAGTGGGGACGGCGCCCCGTGCTAGCTGGAGGGATTCCCCTCCCCCAACTCTCCATCCTTCCCCACCCCTTCCAGATGTAGGGGGGGT--GGGGGATCCCCTCCGCGATAGGCCGCGAGGGTTGACGCG---------------------GTCCCACGACCCCCTCCCACGATCCCCAGAGGTGCAGCGGGCACACCCCTCCTTCCAGATGTGCGGAAGCCCGAGCCCCGCCCCCTCCTCCCGCTCCCGCACTGACCTCTCTTCCGCTCCCGTTTGTCCTGCAACTGCTTCTTCTTCTGCTTCACGCTGAATGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCCGCCCTCCGCCGAGCTCCCGCCGCCTCAACTGACT-------gccccccggggcagcccccgccgcaggggcccgggACCCTAGAGGAGGCGGGGCTAGCAGGTGACGTCAGCGGGCGGGCCCGACAGAATTACCGCCGCGGCGGCGATGGAAGGCGGACGGGGGAGATATAGTCACTTCCCTCCAGGAGCGAGGCGAGAGGATGATGCGGGGTGGGCTACTGGCACGTGAGAGCCAGTGGCACCGAGAGGGCGCCCCGGCGGCGAGGAAGGAGGCGCGCGTGGGAGGACCAGGCTAACTCCGTCACGGACGCTACCAACTCGCGTTCGGAGGAGGGGGGGCGCGTGTCATCACTACCTTGCGCTCCCGGGAGAACCTACCACTCACCTGGAGGGGGCGGCGGAGCGGAGGGCGGGGCCTACTACCTAGGGGAGAGGGGGCGTGGACACGCTGAGGCTATACTACAAAGCC-CCGGGCTTGACCTTAGTGGAAAGCCGAGACTGCG--TCCAGG-------------TTGCTGGACTACACCGGGGGCACGGTCAGAGGTCTTTAGGGGAGGGCGGCGGTCTG-AGAGTCCTGGGTGCCGACCTGTTGGGACCCAAATTCCTTGTGGGAACGATGATAAGGAGCAGGTTTACAGATCATAAGTGCAAAAGCGGGCGAGAAGGGAAACCCAAGCGGGACAAGGACTTTTGGGGGGAGGTCAAAGGGCACGAAGTTGTGCCTGCAGCTGTTACCATAGTAACCGAGGACCGGATGTGGCGATCTTACGGTGCGACAGTCCTCTTCTCAGGCCCTCTGGCCCGAGAGCCTGTTGACTCTGTGACACACTCTGAGGAGCTGGTTGTGG----------TGTTTTCCAGCGAGGGAAGAAAAGAGTAATTTTTTCAAAGCATTTATAGAAACGCAGCAAAGGGAAGGTGTGAGGTTGCCGCCATGCCTGGCAGAGACGGAGGGAGGCAGTTGGCTCCGGAATGCGGCCGCCGCAGATGTTCTCCGCAACCTTCCGGAAGTGGAATGGCGGGAGCCTCAGCATTGCTGCCCACCGACCCCCCGGAAGCGGAAACAGAATCCCCGCGTGCCCCTTCCTCACTACCCTCCAAATCCCGCTGCAGCCATTGCCGCAGACACGATGCCGAAACGAAAGAAGCAGAATCATCACCAGCCACCGACACAGCAGCAGCCCCCGCTGCCCGAGCGGGAAGAGACTGGAGATGAGGAGGATGGGAGTCCCATCGGTGAGGGGTCTGGGAGGGATGTGCACATGCCTGTCAAGCCCGTCCGGGCAAGGGGCTAGGGGCTAATAAGGTGCGAAGGAGGGGGCTGTAACGGAAGGAGGAAGGGCGCACGCGCTGGGGAGGGATGGAAGTGGGGCTCTCCCAAATGGAGCCTTGAACCAGGAGTTCTCTTACTGGAACCATCAACCTCAATACGGCCCCAGACCTTTCTGGAGAAGGCGGGGGTGGAG-----AGAATAAAGAGCTCTTTTGCGCAGCCGCAGAACAGTAGGGGAAAGGGG-TAGTAGAGATGTTGCAGATTGCGATGA-CTGGGATGACAGTTTGTATCCAGACTTTGACTGAA--AAGGTACAGGTGCAGCTTTCTCTAAACTAGTCCT----------------------------CTGGCCAGCAGTTAAGGTGAGGGATTGGTTCATGTCTGGAGACACTTAGGTTGTTTTGGATAGCGACGGTACGGTGAAGAAAAAAAGTTGTCAGTATCTTTTCCTGCATTATCCCCTTTGATTGAATATC-------TACTTTTTGCAAACCCTGAAACAGCTTTGCAGAAAAAAGGGCAGATAGATGGGGTGAGAACTCCCAAGACTGCTGAAAATATACCTGACTTTACTGGTTGAATTAAGAAATAAGTAATACAAGAAAAACACCTAAGAACAGAA--TCATCAGTCCTTTAATCCATTCTGATGACCATATTTTCATGTCTGCTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAACCTGGCGACCCTAAGTCAGGTGAGGAGGAAGGGGCCCTGATCCTTGTATTAGGTCGTAGAGAA-----GACAGCAAGGGAGGGGATAAAACCCAGGAAGGACTTAAAAATAAAAGATCAGGGATTCCAT s canFam2.chr12 3379053 6108 + 75515492 tcttctaattaggtatcagcatcctcactctaaaaatcaaaataactaagactcagggtgggtaaat-------------------aactaggaaaaggtGGAAATTAAGTCAAGGGTGCCAGGAACCTTCCACTA--------------------TTGCC----------------------------AACACTCT-----------------------------CCTTTTCCAAATAGTGAAACTATGTACCTC---AGAGACTGCCATGCATGGGCCACCGCATCCTTACCCACACAGCCGATGGTCACCACCCCGTCTTTGTAGTGCTCCTGGGTCGGGCCGGTTGGCTCCATTGCTGAGTCAGTCTGCTGTTCCACCAGCACTGCAGGCCCATCCTCTTCCTCCTCCTCCTCCCCAGAGCCATTTCCCCAGGTGGCCCCAGCCACATCTCGAGCAATCTTCTCCCGCCAGCTGCTTAAGTCCACTGTTCAAGGAAGGATAAGATGATGAAGATTCTCTCCCcagggccatcacagatgattgcacagactatgcactgcacagctaatgtaactggcaccctctggagttggagagtgccaaccta--------caGGACAGATTCTC-CCCGGCCTTCACTTGACCCCACCTA----GAAATCACGTGAATTTTT--GAGTTTCGGAAAAATACTAGGAAGACTGAAGGCAACAGACCACTGGGGCTCCTGCCTACTTGCTACCTTTGATTCCACCAAGTTAATCTGCTCCCTCTTCTATACCTCCTCCTGGTCGCTCGCCTACAATCATAATAGAAGGGACTGACTTCAGGGAAGGTAAGCAAAATGACTCCAGGCCTTGGGAGTCATGTCCTCCCCCATATCCTCCCACCGCTCCTCTCCAAGAGGTATATACCTTTCCCTGCAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGGGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAACACTGAGAGTATAGAGTACAAAAGTGTCAGCATGTGGGCTTATACACCCCATCTCACCCACCACCCTTAGGCCTGAGATCAGGGACTCCTTTGTCAACAAGCCTCTCTGTTCTCCCTGTTGTCCCTTGTCACCCCACCCTTCCCATGCTGCCTTC-CTCATTGCCTACTCACCGCTACTAGGGTCCTGTGGGGTGCGGGGGTCCCGAGGGAAAGAGGTAAAAAGGACTATGTGGAGTTGAGGATAGTGTTGATGAAAATAATGCTTCCAGGCAACCACGAGAGCTGGTGGGGCTAGATCCACCTTGTTCAGGACCAAGACCAAGGCCAACCCAAGTTCTCCAGTCACGTACTCATAAAGTGCTGGTGGGAAATTCACAACCTGGGGCAGGATTAGTGAGAGGAGGGAGCAATGAGAGATCAACCCAGAGTTCTCTGCTTCCAGCTCCCCACTCACCAGGGACGACTCAGAGACAAGACTCTGGTGGTAGCAGA-TTTGGGGGCAAAACAGTAAATCAGCAAAACTGAACTAGGAAGATAAAGCAGCAGTAAGCAATACCTGTGCATTTGTCTCTGGGGGATTTCTTACAGGTCCTGATTAGGGATGAAAATGAGCCCAAAACAAGACAAGCAAATAGTTGTACCTAGCAAACTAGCATGAAGGTTGGGGTCAGGCAT-GGGGTGGGAGTTGGCATAAAACTTAATACCTGTTTTtgtatgcacacatcta----------------tgcatatacacatgcatgtatgagcgtgcacatgtctgcatgtttgtgatgcttatgtgtggctgtg----tgagtgcacacaagcaaacacatgtttgtgagtac-------gcgcaaaagtgcatgtgtatacatgcTGTTAAGAACTTACAACCTAAATGTCCCCACAagctctgtgcagtggcagtattatagccgatgaggtttatctgaagcatgattatcgctaactaaaTGTCCCCACAGACCTCTCTGTCTCCCAATGGAGGACAGCAGTGAAGTGGTATAGCCA-AATTAACACAAAGGTTGTCCAGTAGCTGAGCCCAGAGCCTTAACCACTGTCCTAGCATTCCAGGTCGGGTTGCGCTCTATAGTGACTATTGTGGTA-------------------------------------------GGGCAGGGAAGAGCCCCCAGCTGCCTTCACAGAATCCCGTGGCACTCC-ACATTGGAACTTCCTATCGGTCTAGCTGTGGTGGAATGAA-AATGAGATATACAGATTTTTATCAAAGGAAGTAAAAGAGTCAGTTAACCAGAGCAGGAGTGACAAGCTGTGACACTGATGAATAAAGGACTGAGTTCCTGATCACAGACGTCAGTATGAGATAGGTATGACTAAAAAG-------GAAAAACACCTTTCCATCTCTCAACTTCTGCCTCTGGCCTTTACCCCAGAAGAATCTTCCTCCTCCATACCCCTTG-TCACCCTCATCCCCAGTACTCACTGGATGTCGGATATCAGTGATAAGCAAGACAATGTCAGACATCTCCAACACGCGCCACAACTGCCTCCACGTCTGAAAAGACAAGTTCAGTGGAAGAGTACCGAAGACCCAAATCCGTCTCCTGCCTGATCCCAGAACAATTTGACCAAGGGGTTGCTATGCCCCACTCCTGGCCCC--ACTCCATTCTCACCTCCAGATTATGTTCAAAGTAGCTGAGTTTCTCAGAGGAGTAAGCTCCATGAATCTTCCCAAGATACTCCTGGAAGCTCCGTTCCTCCTGGCTCATTAGCTGCTCTTTGGACATCTCATAGCTCCAAGGAGGACGACGGGGAAAGTCCAGGACTGGAAGGTTAAGAAAAAGCCCGAGTAAGTCTGAGAATGGTTTCAGGGCTCAACAGTGGCGGCA-CCCAGATCTCTCATTGGTCACAG----------CTCATCCCAGCTCCTTCCCGGAGCACACTGCCTCTCCCAAATATCCAGGTGTTGAGCT--CTTACCTGAGCCAAGCTGATAGACCTCTCGGATATCCAGTTCCAGCAGCTCAGCACTGACAGGCTGTAGCACTTGCTCTCGGGCTGCTCTCTTCCTCCTTTCCACCTCCTCCCGGCTGTCTCGCTCGAAATGCAGCCGGTATCTAATGGGACAGGGACCGCAGCATCTCTTGCAATCCCGTGCCCATAAA-----------GCCCCCTCCGGGCAGACATCTTCGCAGAGCTTTCTCTCCAGAGTTGTTCAAGTCACCTTTCT---GTCGGGCCCTCCCTCGAGTGTCTGTCCCA----------AGCCTCGCCCTTCTGAGGGCCAAGAACTCTCTGCAGCCCCTCCGGAAGGGAGGCCTGTGGCCCGTTCCGTGGGCCCAGCTGCCTCG----GAGCCGCGGCATCCCAGACCCACTCGCC--CACTGGTAGCAGCCACCTTCTCCCCAACACGCTTGTCTCCAGGCGGGCGGGGAACAcccggccggcgccggcgctcccgcccccgcccgcTCTCACCGGTTCGCATCGTAGCCCCGAGGGCCCAGCCCCTGGGAAGGCTGCTGGTTGAGCCTGCGGATATGGTGGGTCATGGACTCTCCGTCCGAGGTGTCGGTCTGCTCCTCCCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAGCTGGATCGCAGCCCATCTTGGAGCCCTGCGGGGAGGAGGCAGTGACGCCGATACCGGCCGGCTCCAAGCAGCT-CGAGACCCCGTCCCCGGTCCAGCTGGCTTCCCCAC-CACCACCCCATTCCTTTCGAGG--CCGTCCTCCCA-CCATCCTTCCCAAGACCCCAGAGGATGCGCGT-CGGGGAGTCATTCCTTCTGCAGGGTTCTGCGGGAACGACGCCCTGTCCGAGCGGGAGGGATTCCCCGCCCCCAA-TCTCCGTCCTCCTCCGTTCCTTC--GGGGGAGGCCGGGCTGAGAGAAGCCCCTCGACTgggccccgcgggcgtgggcgcgcggccaccgccgggcccgcccgccccgcccgccccgcccgccccgccc---ggcccAGGGGGCACACCCCTCCTTCCCGGGGTGGGGAG--TCGGGCTCCGCCCCCTCCCCTCGCGCCCGCACTGACCTCGCTTCCGCTCCCGCTTGTCCTGCAACTGCTTCTTCTTCTGCTTCACGCTGAAGGGCTTCTTTCTCGGCATGGCCTGGACCAGTCACCTGGCCCACCCTCCACCGAGATCCTGCCGCCTCAACTGACTCCCCCCCACCCCCCCGGGCAACCCCCGCCGCAGGGGCCTGGGACCCAGGAGGGGGCGGGGCTAGGCGGTGACGTCA-CGGGCGGGCCGGCCGAGTTCGC--CTGCGGCCTGGGTGGAAGGCGAA----GGAAACACCGCCGCTTCCTTCT-GGAGCGAGGCGAAAAGACGCAGCGGGCCGGACTCTCCGCACGTGAGACTCACTGGCACCAAGAGGGCGCAGCGGCGGCGAGCAAGGAGGCGCGCGTGGGAGGATCGAGCGAACTTCGTCACGGACGCTACCAAGTCGCTCTCGGAGGAGGGGGGGCGTGTGTCATC---ACCTTGCGCG-CTGAGGGAACCTATCACTCACCTGGAGGGGGCGGGGGCGCGGAGGGC-GGGTCTACCATCTGGGACAGA-GGGGCGTGGGCGCGCCGAAGCTAATTTACCCCGCCACAAGGTTGGACCTTAGTGGAAAGACTGGACTGCGCCTCCGGGGAATGAAGTCGACTTGCTGGTCTACACTGAGGGCAGTGCCAGACGTCTTGAGGGGCGGGTAGCGGTCTGAAGAGTTCTGGGCGCCACCTTGCTGGGGCCCAAATTCCTTGTGGGAGCGATGAT---GAGCAGCTTTACAGATCATAAAGGCAAGCGCGGGCGAGGAAGGAAACCCAGGTGGGACAAGGACTTTTGGAGAGAGGTCAGAGGGTGCGAAGTTGTGCCTGCCGCTGCTACCATGGTAACCG-GGACCGGATGTGGCGATCTTAAGGTGCGACAG---CGTTCTCAGGCTTTCTGGCCCGAGAGCCTATCAACTCTATGGCATACTATGAGGAGCCGGTTGTGGGTTTGTTTTTTTTTTTTCAGCGAGCGGAGAAGAGAGGAATTTTTTTTAAGCATTTATAGGAACGCAGCAAA---AAGGCTTGAGACTGTCTCTGTGCCTGGCAGAGACCGACGGAGAC------CTCAAGAATG-AGCCG-CACAAAAGCTCCCCGGAGCCTTCCGGAAGTGAAAGGGCGGGAGTCTCAGC----CTCTCCTTCCACTCCCCGGAAGCGGAAACAGAATCCCAGCGTGCCCCTTCCTCACTGCCCTCCAAATCCCGCTGCAGCCATTGCCGCAACCACGATGCCCAAACGAAAGAAGCAGAATCAGCAGCAGCCGCCGCCTCCGCAACAGCCCCAGCTGCCAGAGCGGGGGGAGACTGGAGACGAGGAGGATGGGAGTCCCATCGGTGAGGAGCCCGGGAGGGCTGTGCACATGCCTGTC-AGCTGGTCTAGCTGAGGGGTTAGGGTCTGAAAAGGTGCGGGGGAGGGGGTTCTAACCGAAGGAGAAGGGGCGCTGGGGCGGGGCTAGGA---------GGCTGTCCCCTGTGGAGCCCTGAGC---GAGTTCTCTTCCTTGATCCCTCAACTTCCATCC-TCCTGTAACCTTTCTGAAGAAGGCGGGGGTGGGGGGGGTAGCATATAAAGCTCATGCGCGCAGCCGCAGAACAGCAAGGGAGAGGGGACCCTACAGAGATCGCAGATTGCAATGATTTAGTATAACAATTTGTGACCAGACTTGGGCCCAAGGAAGGTGGAAGTGCAGCCTTCTCTAAACTACTCTGAGGCGGGGAGTGCGGAGGATCATTCCGATTGGCCAACAGTTAAAGAGAGGGATTGGGTTACCTCTGGAATCACCTGGGATGTTTTGAATGGCAACTATGTAAGGGAAAGAGAAAGCTGTAAAATACCCTTCCCGTAGTATCCTCCTTGCTTGAGTCTCCTTTTTTTTTTTTTTGCGAACTTCAAAAACGCTTTGCAAAGGAAAGAGCAGGCAGATGGGCTGAGAATTTGTAACGCTACTGAGAATATATCTGCCATTACTGATCGGATTAAGGAATGAGTAGT---AGAAAAAC-------AACAGGATTTTACCAGTACCTGAGTCCATTCTGGTGACTATATTTTTATGTCTACTCTTAGGACCACCTAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAGCCTGGTGATCCCAAGTCAGGTGAGGACAAGGGGGCTCTGATTCTTTGATTAGGTCCTGGAGAAGGGGGGGCGGC--GGGAGGGACTAAAACCCAGTAAGAACTTAAAACCAAAAGATCAGGGATTCTGT a score=17227 s hg19.chr6_ssto_hap7 1859696 429 + 4928567 cactTTgaaattagaactcttgtgtactgctgctgggattataaaatggtgaaactactatagaaaacaatatgaagaggttcctcttaattaaaaatagaactaccagatgacaaaaaaattaaaaatagaattacc-------ccagaactcctgcttccaggtatatatcaaaaaaaaaaaaatggaaagcagggtcttga---gatatttgcagactcatgttcatagcagcagtattcacaataacaaagaggtggaagcaacccacatgtccactgatggaaggataaa-tgtggcgtgtacatacaatggaatattattcagccttatgaaggaagaaagtgctgtcacatactacaacatggatgaactttgaggactttatgttaagt-------------------aaagacatagtgtattattccacttatctgaggtgtctaaagt s canFam2.chr12 3385980 422 + 75515492 CACTTCAaagttaagatgcttgtgcactgttggtgagattgtaaaatggt-acatttctatggaaaacactg----gagtttcctc-------aaaa-----------------aaaaaaatttgaaataggactaccacatgatccagcattcccacttctgggtatatatccaaaaaaa-----tggaaagctgggtcttgaagagatatttgcacatgcatattcatagcagcactatttacaagagccaagagctggaagcatcccaaatgtccattgacagatgaataaaattctgtatattcatacaatggaatattattcagcccccaagaggaagggaatcctgtcacatactacaacatggtagaacctgtaggccatctggctaaatgaaacaggccagtcacaaaaaagaca-aatgtatgattctacttgt--gaggtatctaaagt a score=4560 s hg19.chr6_ssto_hap7 1860434 122 + 4928567 gtcaacttcaaagaaacagtagaatgatggttaccagaggctgggggaaggaagctggaggaaggggagttttgtttaatgggtacagagtttcagttttgcaagataaaaaacttttggag s canFam2.chr12 3386403 100 + 75515492 gtcaaattcatagaaacag---aatggtagttactaggagctg-------------------agtggagagttgtttagtagctatagagtttcagttttgtaagatggaaaagttctaaaa a score=2645 s hg19.chr6_ssto_hap7 1860858 45 + 4928567 atctgtttcacatcaatatgaatatatgtaacactactgaactgt s canFam2.chr12 3386503 45 + 75515492 atctgtttcacaacaatgagaatttacttaacactactgaaacat a score=1833 s hg19.chr6_ssto_hap7 1860921 45 + 4928567 gatggtaaattttatgtgttttttaccacaataaaaaCCAAACAA s canFam2.chr12 3386654 43 + 75515492 gacagcaaattttacatgttcc--accacaattaaaaaacaacaa a score=66547 s hg19.chr6_ssto_hap7 1861120 1096 + 4928567 Caccacttttcacactcaccatggcaaaatttaaaaac---ctaacaattccaagtgttgtcaaggctataggacaactgctggtgagagtgcaaattggtataaccactgtgaaaaaaaagtttggcattatgtatgaaacttgagcataacatatactttataagccagtaatacctctactacgtatatattcaacagaaatgcatacgtatgtgtaacaa---catgtataaaaatgtttatagtggcatttctcgttatagccccaaactggataccacccacatgtccatcatcagtagaatggataaataaattgttgtgtatgcatgcaatggga--ctacactgcaacgaaaatgaatgaactgctgctacaggcaacctggatgaatctcacaaacatgatgttgagcgaaaggagccagacataaaagaatgcagactgtatgattccatttttgtgaagttcaaaaacaggcaaaaactaacctatggtg-------tcaggatagtggttacctttggggaggagggtgggtaatgggaaa--aggggcacaag----gggaggatcttttgaggtgctaataaggctttatctcttcac-ctggtggt-ggaaactcaagtgtgtctactttg-tgagaactgggttgtgcacttaaaactggtgtgtcttt----atgtatgctgttcttcaataaaaaAAATTTTTTTAATCACGG------TTTATCAGGATTCAGCTGCCCATTAGACACCTTTCTGTGtctctctctctctctct----ctcCAGCTCTTCACAGAGGTCCTCCAGGATCAAGGGGACCACTGATTCCACCACTGCTGAGTCTCCCACCTCCTCCTTGGGGTAGAGGCCCAATTCGGAGAGGGCTTGGCCCCAGGTCTAGCCCATATGGTCGTGGTTGGTGGGGAGTCAATGCAGAACCTCCTTTTCCGGGGCCAGGCCATGGGGGTCCCACCAGGGGAAGCTTTCACAAGGAACAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCGCCCAAGGATGACCCCCAGGTTATGGAAGGTGAGGTCCATTTTGTT------------------ATGCCCATTACTCCCAGAGTGA s canFam2.chr12 3386697 1133 + 75515492 caacactccccaga------atggcaaaaatgaaaaaaaaattgacaatactaagtgttgtcaaggctgtggaacaattgccagtgggaacttaaattggtacatccactttgaaaaaga-gttggac----ttcattaaactttagcata-catat-ccccaggacccaacaatacttttactaggtttatactcaacagaaatgcatacatatgtgtaacaaagacatgtataaaaatgttcatagcagcatttttcgttatagccccaaactggaatccacccacatgtccaccatcagtagaatggataaataagttgttgtgtgtgcatgcaatgggatactacactgcaatgaaaatgaacgaactcctgctacaggcaacctggatgaatctcacaaacacggtgttgagcgaaaggagccagacagaaaagaatgcagactgtatgattccatttatgcgaagttcaaaaacaggcaaaaactaacctatggtgctagaagtcaggatagtggttactttggggggggggatggaatagtgggggaggaggggcacaagtggggggagga-cttctgat-tgctaagaaggctctatcccttcacacgggtggttaaaaacacaggtgtgtttactttgatggtaatcaagttgcacacttaaaattggtgtatttttctgtatgtataccgtacctcaaaaaagtaaacaa----AAACACAGGGCTTCCTCATGAGGATTAAGCTGGCCACTGATCACCTTTCCATGTCTTTCTTTCTCTTTCTTTCTCTCCAGCTCTTCACAGAGGTCCTCCAGGATCAAGGGGACCAATGATTCCACCACTGCTGAGCCTCCCACCTCCTCCCAGGGGCAGAGGCCCAATCCGGGGAGGCCTGGGTCCCAGGTGCGGCCCATATGGTCGTGGCTGGTGGGGGGCCAATACTGAACCTCCTTTTCCTGGACCAGGCCATGGGGGTCCTTCCAGAGGAGGCTTTCACAAAGAGCAGAGAAATCCCCGAAGGCTCAAAAGTTGGTCTCTTATCAAAAATACCTGCCCACCCAAGGATGGCCCCCAAGTTATGGAAGGTGAGGTTCTTTTTTTTGATGCCTGTACATATTTAATACCCATCACTCCCAGAATGC a score=134566 s hg19.chr6_ssto_hap7 1862259 2499 + 4928567 TTTTTGCTTTTGAAGCAGAAGTAGACCTCAATGT-TATTTCTCCCAGGAGAAAG---ACTACCATTCCAAAATACCTGGAAATGGTAGGGGGTAGAAAA--TCAGTTCTCCTTCTGTCTCTGCGTTTCATTGTATTTGTTTTCTTTGTTGCTCAAATTTTTAACTGTTCCATTTTCACTTGTTCACAGACAAATCCGACCGCCCTGTCTGCCGACATTTTGCCAAAAAGGGCCACTGTCGATATGAGGACCTCTGTGCCTTCTACCACCCAGGCGTCAATGGACCTCCTCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCTCTCTGTGACCTAGCGGCCATTTATTTCTCTGTAGCCCTATGATGGCTACTGTGAGGCTCTT----CTAACACCCTCAGTCAGTGACACACCCA-TCCCATCCACCACTTCCCCCGTGTGGGGTCCAGAGTGGTGTTGCATCACTGGTGCGCGGCATACGCGCTTTCTTCTGATCCAGCCTGTAGAGACTCGCCTTCGGGA-CCCATCTTTGCTTCCTTTCAGTTGCCTCCTGGATCTTCTTTCCCGTCATCAAATGACTGCTGAACAGGAAACCTCTTTGGTGCTGTTTCTTGTGC----ATCTGTCCACCTGTTCCCCAGTATTGCCCTCAATTCCTGAGAGCCCTGGAGCGGTTTCCTACCATTCCCTTCTTTTAGCTGCTTGTTTTAAGTCCTTTTTATGTGACATTCCCTACCCCCAATGTTGTCAGCTGCT-TGTGAAACTCAGCCAGGTTGTCTAACCTGGGGTCAAGTTTGGGTGACTGGTGCAGAGTTACTTCCTAAAAGGCCACTCTCCCTGCCTTTGGATTTCATAGTTTCTCTGTCAGTAGCATGATCCCCACCGCTATGGTCTATCTATGATCACCGTGCTTTGTGAAACTGTGCATCCCCT----TGTAGCCTTTCTCAGTGTCCGTGGCATTTTTGTGACTTCCCAGCACTAGAATAAGTTTTCCTGCCAAAATGAGTGAGGCGCTTGGTGCCCTCTGGACTTTCC-CACTTCCCAACATGGGAGAATTGTG-AACTTTCCATCAGACTGCCTCCCTGGCCCTCCCCATTCTTCTCCTGTTGGTTATTCTGAGTCTGACACAGACCCATGACATGTCTTATAAAGCCTCCAATGGCTTTATCCTACCTAGATCCCTTCCAGCCCATTTTAATTAGACTATGTCATTGTGAGGCCACCAGTCCATTCATTTGAATTCTGTGAATCTCCACCTTGCCTATCTTTGGGTAGAAGCTGGACAGTACTGTTGCCCTCTTCCAATCCTCTTCCCCTACATCCCTGGCACTGGTTGTTTTCTGTGAAAACAGCAGTGAACAGGTTCAGTTTTGAACTGGCCCTGAGGAAATGGGTCAGGAGTTGTATTGGCAAGAGGGAGGGGTGAGAGCTGTTGGAGAACTGAGAATGAGGttttttttttttttttctttttaactttttttATATTAGTAATAAATGCAGTGGAAACCAGCATTTTATTTAATCCCTGTGTTCTAGTCATCTCTGGAGTTGCAGATGAAGCTGTTCTCACCTGGTGGAGTCAGCTTATTCTTTAGTTCATACACACTAGTGATGGGGAATGACAAAGCTTAAGGTTCTTCCAGGCTGAAAAAAACCAATGGAGGTTCCATTAGCCTGTAGGCATCAACCAGAACAAGCTGCCTTATGTTCAAGGGCAAAGTTTTGTAAGAAAAAGGAAAGGCCAGGTGTCCGTGGAGTTATTTTTAAATATTTTAC-----TTTGCAGAGTTTGTGTTTATGGAGTGGTAATGATGAAGGAGTCTTTCAGCAGCAATTTGCAGAATGCCTGTGGGCCAGGCAATATACCAAGCACTAGAGATAACTGACAGCCAAAGCCAATGGATTTAAAATGTACAGGGAAGACAGGTTTCTC--ATAATCACAAATAGCATGTAAAGTTAAACCTGTCAAAAGTGCTGGGAAGAAGACAGGGAAGAAAAGAGGGTGAAAGAGAGTTGTGTAATAAAGGGAGTCAGGGTAGGAGATGCAACTGAGACAAGCTCCAAAGGATAAACAGGAGG-TGGGGTGGGAGAGGGAAGTCAAGGCAAAGGTCTTCGCTAAAAGACCTAGGGGAAGAggagctaagaaacctagggacagtgggagatgatgcagaagaaagaggagttagaccactcagggccttggaaaacatgaagatttggctcttttcttagaacagaagcctttgaagaattttagacag--gagtatcatggcttaggctggcttttcaaaaaaaatcag--cttgtatggagagggcccaccttggacctggaagttaattagaaggctactggctacttcagtagtacaagtgagccatgatggtgacatagacttgggtagtagagttggagaaaagtagACATTTGAAAATTACAGGTCAAAATAAAAGTA--TCAGATTTCTCCAGGTAGTTCTGGCTTATGTAACTGCCATTTAAAAAGAAG s canFam2.chr12 3388054 2385 + 75515492 TTTGTCCTTTTGAAGTAGGAATAGCCCTGAATGTGTTTTTCTCCCAGGAAGAGGACTACTACCATTCTAAAACGTATGGAAATGGTGGGGAGTAGAAAAATTTGACTGCCCTC---TCTCTCCTTTTTGTTACATTTGTTTTCTGTCTTGC----ATTTTAAACTGCTCAATTTTCACTTGTTCACAGACAAATCCAACCGCCCCGTCTGCCGACACTTTGCCAAAAAGGGCCACTGTCGATATGAGGACCTCTGTGCCTTCTACCACCCAGGCGTCAATGGACCTCCTCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCCCTC--TGACCTAGCGGCCATATATTTCCCTGTGGCCCTGTGACGGCTACTGTGAGGCTGTTCCACCCACCACCCTCAG--------ACACCCACCCCCATCTCTCACCTCCCCCATTTGGGGTCCAGAGTTTTGTTTCATCACTGGTGCCCAGCGTGTGGGCTTTCTTCCGATTCAGCCTCCAGAGACTCGCCTTCAGGACCCCACCATTGC-TCTCTTCAACTGCCTCCTGGATCCTCTTCCCCTTCGCCGATTGACTGCTCAACAGGAAACCTCTTTGGTGCTGTTTCTTGTGCATCTATCTGTCCACCCAGCCCTCGGCACTGCCCTCGATTCCTAAGAGCCCTGGAGCAGTTTCCTGCCATTCCCTTCTTCTAGCTGCTTGTTTTAAGTCCTTTTTATGTGACAAACCCTACCCCCAAAGTTGCCAGTTGCTCTGTGAAACTCA-CCAGGTTG----ACCTGGGGTCAAGTACGGATGACTGGTGCAGAGTTATTCCCTGAAAGGCCACTCTCCCTGCTTTTGGATTTTGTAGATCCTGCGTCAGTAGCATGGTCCCCACCACT------CGTCTGTGATCACTGTGCTTTGTGAAACTGTGCATCCCCTCGTACGTAGCCTTTCTCAGTGTCCGTGGCATCATTGTGACTTCCCAACACTAGAGTAAGTTTTTCTGCCAAAATGAGTGAGGCTCTTGATGCCCTCTAGATTTTCCACACCTCCCAACATGGGAGAATTGTGAAACTTTCTGCAAGACTGCCTCCCTGG-TCTCCTTATTCTCCTGGTGTCGGTTTTTTTGGGTTTGACCCAAGCCCATGAGATGTCCTCTAAAGCCTCTTACGG-GCTATCCTATC----TCCTCTCCAGCCCACTTTAGTTAGAGTACGTCATTGTGAGGCCACCAGCCCTTTCGTCTGAATTCTGTGAATCTCCACCTGGCCTACCCTTGGGTGGAACCTGGACGGTACTGTTGCCCTCGTCTAACCTTCTT-CCCTACATCCCTGGCACTGGTTGTTTTCTGTGAAAACGGCAGTGAACAGGTTCGGTTTTGCACTGGCCCTGAGGAAATGGGTCAGGAGTTGTGTGGGCAAGAGGGAAGGATGAGAGCCGTTGGAGAACTGAGAATGAA---------TTTTTTTTCTTTTTAACATTTTTTATATTAGTAATAAATGCAGTGGAAACAAGCATTTTCCTCAATCCCTGTGTTCCAGTCATCTCTGGAGGTGCAGATGAGGCTGTTCTTG---GTTGGAGTCACTTTATTCTTCCATTTGTTCATA----------GGAA----AAAGCTTACGTTTCTTTCAGTCTG-AAGGAACCAGT-GAGGTCCCATTAATCTATAAGCATCAAATATACCAGGCTGCATTACATTCACAGGTAAGGTTTTATAGGAGAAAGGAAAGGCCAAGTATCTGTGGAGTAATCTTTTAATATTTTATCTATGTTTATAGGTTTGATGTTTATAGAGTTGTAATGACAAAACAGTCTTTGAAGAAATAGTTGTAGA----CTGTGGGCCTGACAATATACTAGGCACTAGAAAGAACAG--AGCCAAAGCCAGTGAATTT-AAATCCATAGGAGAGACACGGTTATCAAAAAATCATGAATA-TGCATAAGGCCACACCTGTCAAAAGTG---------------------AGACATAATGAAAAGGGAGTATGTAATAAAGGGAGACTGGGAAGGTGACA----TGAGACAAGCTCTGAAGGACaagcaggaggcctgagtaggagagcaaaagccaagcaaaggtgtttgctaaga----------------------------tgggaaaagtagaacatgaggcagaagaaagaggagctagaccactcatggccttgtagaa-ataaagacttgggtctcttttattaccaaagacc--tgaagggtcttaggccattgactatcatggattagattttgtttttcaagaagatggattctaatttggagctggcc------aggcatggaagtgccttgcaagg-tat------cttcagtagtccaggtgagttatgatggt---atagccgtgggtagtggaatgggagaaaagtagac--ctgaaa-----agatcaaaatgaaaatattttaggtTTCTCAGGGTAATACTGGCCCGCATAACTACCATTTAAAAAGAAA a score=5638 s hg19.chr6_ssto_hap7 1865107 194 + 4928567 AAGATAGAAGTTTATTTCTCTCACAGGTCAAGAGGTGGACAATCAACAATCCAAGATGTGTGACAATGCCACCACTACAAGGTCCCTGAGTATTCAGAACCTCAACCCCCAACTTTCAGATTCACAACCACAAG---------CTTCTATTCACTGTCC--AAAGTGAAGCTCTGGCTTCCTCATCCATGTTCAAAGCCTCAGGA s canFam2.chr12 3391078 185 + 75515492 aaaatagaagtttatt--tctcacaactcaggaggtagacagc--acaaggcataatg-------------ctaccacaaggtcctcaggtattcagaacccctcCCTTCAGATTCCAGCTCCAAAATTACTGGGGTCAGATCCTCCTATTCATGGTTTGGGAAGTGGA---TAAGCTAACTTATCCATGTTCCAATCCTCAGTA a score=5588 s hg19.chr6_ssto_hap7 1865709 151 + 4928567 TTGAGTTTATTAATTCTACAGAGGTTATCTCCCTAAAAGGGGGCTAGGAatgacaggattagggtttgtgtttggtgatttcaaaagaa---------acaggaaattgttctggcttagatgctgtcagaaag-----------atgact--acttcttaatcttatctaga s canFam2.chr12 3391676 165 + 75515492 TCAGATTTATTAATTCT--GAAGGTTAtctcactaa------gttagaaatgacaggtttagggtttctgctaggtgatttgggggaaaggttcaaggaaatgaaattggtctgggttgggtgctctcaggaagtgaaggcaattgtgaatgcacatcttaatctcatctaga a score=11395 s hg19.chr6_ssto_hap7 1865860 368 + 4928567 aggagggagaaatgaaatatggctaaagctgtaa--ggtaaaaaag----ccaacacattttagctgacagggaactgtgtgg------------------------tgtttttgtgcttagacaagattttgaagtttgtctaatttcatcacaaacacaggatgaccttgtttgacactgattttctgtgagatagtttatgttcaacaagagtaccatggcctaactatgggcaacaggccagctcccagcaacaccaaagcctgccagttattgtcaggccagttcccaattctcagggactgtttttctTAAAAGTATGCAAACATATAATTACAGGTTGAGATGAATCATATGAAGGAAATAAAT--GGGGTACTGAATAGA-AACAGTAGTTGG s canFam2.chr12 3392050 347 + 75515492 aggagggaggaatgaaacatggctaaaagtgcagttggtcaaaaagagccctcattcattttagcagagagggggctgtttaatatttatggtttgcatgacgaccttgtctttgtgcttagagaaggttttgaactttgtc----ttcgtgacagtcatagtaacagc-----tgacatttatgttctgtgagg----ttatgtttaagttgagcatcatggcttagct-----------------------------------------ggtaggatcaggccaattcccagttgtcaggggccgtctttctTAAAAGTGAACATGTGAATAATTACAGGTTGTGATTAATGATATTAAGGAAGTAAATGAGGGGTACTCTATAGAGAGTAATGGTTGg a score=5382 s hg19.chr6_ssto_hap7 1866551 244 + 4928567 TGGTGGCTAGGATAGACCTCTCTGAGGAATCTGT------------AGATGA----------------------agggcccagaacttagccttgaggaactctgacattgaattgctaagtgaagaagg---------acaaggat-------------------------------------------------aagccagacaaggagactaaggagggatgac--ggagagg-cagggagagatctcagagtgtggcgtcacctggCTgcttgctcagtgccaggtaccctgctaagctctttatagacattgtctttgtcttatttaagcttca s canFam2.chr12 3392774 319 + 75515492 TGGTGGTTGGGATAGAA--CTCTAAGGAATCTGCtgaaaccacataagaggagaatgtcaagtggaaagaagagagggcccagta--tagccttgaggagggctgacatttagtggccaagtacaaaaggatgaaaccaacaaggagactaaggaggTTGGCAAATCGAACTCCAATAAAAATAACAAAAAATCAAAAGAGAGAGAGAGAGACTGAGGAGGGATGGCCAGAGGAGGTTGGGGGGATATCTCAGAGTGTAAGATCTTTCCA----TTGTTCTGTGCAAGGTACCATGCTAAGTTTT------------TCTATTTGTTATTTAAGTCTCA a score=8792 s hg19.chr6_ssto_hap7 1867037 271 + 4928567 catactttcagtgaacactttagtgcctactgtagggcaagcactgttttaggagctggagctacatcaataaaaaggacaaaatccctgcccatatggagcttacattgctttgaggatgatagacaatatacataggtaatataattttaagtaatagtaaatgcttcaaatgaaaataaagtgaaaaaagaggttagagagtgacaggtggaagagaacaggttgatacaaagagagagctgctttgaggaggtaacacatagagaga s canFam2.chr12 3393093 242 + 75515492 cattcattcaataaatatttt------------------agcacta-tttaggggccagaaatgtaataaagagaaagat-aaatccctgcccctatggtgcttataatctgttgaggataatagacaataagtat--gtactataaacttaagtaa---tacgtgctctaaagaa----aaagagaaggaagaggctggagagtgacaggtggaagacaatagatcagtattacaatatggcttcattgaggaggtaagatatcaataaa a score=5643 s hg19.chr6_ssto_hap7 1867308 124 + 4928567 aaattaaacgagggaacaaaccatatgaacacacagagaaagtgcgttccaggcacagggaacagcaaaggcaaaggccttgatgcaggaatgactctggggtgtttgaagtaaaaatagaagg s canFam2.chr12 3393763 122 + 75515492 aaattaaatgagaaagc-aacgatgtgagtatctggagtaagtgcattccaagcttaaggagcaacaagggcaaaatccctgaggaaagaatgagtttgaagtgtatgaagt-aaaatataagg a score=4431 s hg19.chr6_ssto_hap7 1867721 125 + 4928567 ccagtgtggctagactgtgggagatgggatcaagatgtttaacagagggcatattgtacagagccctataaactatggtaaagcatttggattttattctggattttatacttttttaaatattt s canFam2.chr12 3393885 113 + 75515492 ccagtatagctagactatggagaa--agatcagga--accaacagggggcaggtcatatagaacctggtaagctgtagcaaagcactcagattttattctg--------agtgttttgaagatct a score=11057 s hg19.chr6_ssto_hap7 1868174 270 + 4928567 gatttacattttaaaaccacctctgactgtaggtgtgaaggatagactagagaatgagaatgacagcaggcagaccagttaggaggccagcgcagtgcagtggtccagggagaagagacgatggcttggtc-agggtagaggtggagagaagtggttaaatttgggttatgtttt--AGtctcagttgatggcaattacatctttctagttaactcaggccagaaatattggagtcatcttt------aattctatttgtcaaacatgacctccaatcc s canFam2.chr12 3393998 262 + 75515492 gatttacatctta---------ctga-tgtaggtgtgaagaatagactagagaccgagaatgacaacagaaccaccagttaggaggc-----cactttggtcgtgcaaaggaaagagatggtggtatgctctggggtagaggcggagataa-tggacagatttgggatatgttttaaagtctcagttgatggcaactccatctctctattt-gttcagtctggaaaactcggagccatcgttttaaaaaaatattttggtcacacctgacatccaattc a score=6987 s hg19.chr6_ssto_hap7 1868450 198 + 4928567 aaaacttgttggctcttttccaaaatacattcagaaaccagcccttttc--acacctccactgctgtcaccctagtctgagtcaccatcacctcctaatagatctccctgcttctgtcatttctgcccattctttgctgcctgccccctcccacctcccgcccaggttgttctcagcacagcctccagagtcatcctttt s canFam2.chr12 3394447 172 + 75515492 aagacctgctggttccatctc-aaacatatccagaaaccactcctttttcaccacctccaat------accctggtctgcgtcaccaacacttgctaacgtgtctccctgcttctgccattcctccccgccctgagct---------------------cctcagtttattctcatctcagcatccaaagtcatccttct a score=25365 s hg19.chr6_ssto_hap7 1869489 605 + 4928567 actctgcagtgac-ttccatttaaatcaacagaagaagccaaaatccttaagataatttaaaagacctttcccaatccagaccctgctttacttctcttttcacctttcccacaa-ctctggctcactcatgccactccagcccctcttgcctccttcctgtttgttccccatgtatgtccga--acactcctgtcacagggctttactccagctgtttcttatgctagaaaggcccttctcctggaaatccatgtggccaaaa--ctaatcttctttaatgatttgcttgaatttcactttactgaggcctcat--ttaagactaaaatctgtcctcttgatacttttaaacttgatccatattttcttttatctataggatcatctcccctgctggaaacgtaatcagagatctttattttattcagtagtatcccaagagcgtagaagagtgcctggcacatactatacactcaataaatatatttgttgaacagatgaatGAAAAAATGAGGCAGACTTAGCTGgctgatggattgattaggggaggaggaatggagaaagaggatgatgacctttcagttttggcccaaataactgaatgacctgtgg s canFam2.chr12 3394818 559 + 75515492 Cccttgtaatgactttctattttagtcaagggtagaagcc-aaattcttcagatgacctacaagacccttcccaatccagaccccgctttacttttctgttcacctctccaacaatctctt-----ctcacactggaccatccacactg---tccttgctgtttgttcctcattttataccaagtacacttctgatatagagctttgctctagctattccttctgccagcaaggctcctctcctcgaaacccatgcagccaaaactctcaccttcttcaagg-------tgaatttcacttcactgaggcttcatagtttatactacaacctgccctcttggtactttt-accttgacctgtattttcttttttccatggcattctctctcctactggaaatgtgagcagaggtctttattttattcactg--agcccaagagcctagaagagtgtctggcatataccatgtact---taaacatgttttttg----------------aataaagtagacatggcttgctgat-------------gagggggaatggagagagcg---aatgacctttcagtttgggctcaagtaaataaatgaaaggtgg a score=27871 s hg19.chr6_ssto_hap7 1870094 890 + 4928567 tgcaatttcttgatggggaagcctggaagag--acaggatttaggagtaagaacaagagctccattttgtacgtatga----gagaga-tttattaaagatctcagagaagatgtcccataagcagttgaattcatgagcctggagctcggggcagaagttgggggccagcaagagaagtttgggaatcttcattggttatagatggtatttaaagtcaggaggtgataggtgataagtctagattaaggagagtgtcaaagatttagccctgaggca----------------cttcaacatttagactt----------------------caggagaagcccattagatgcaaaggaaacctatagagagtagtgtccctgaagaaaacaaaggaggga---gggagcgaccaagtctatcaaacattgatgggagagtgag--tagga--------tggccccagatctgttgactttggcaagtgtgaattcagacaatggtggcaacaaaagcatgattgtagtggttt-----------gagagCTGACAGAACTACAGGAGCACcttgctcaagctcccatattaagtggtagagttagaagtgaaccaaagtcttgattgtggtgatagtttactgggtttatgcaggtcaaaactt--atttaagtgatactttgcagtttattttgggtgccattttattttgtgtacagtttattgtatgtcaattatatctcagtaaagctgtta-------ccaaaaaaa-----ATAAATGAACCGAAGCTCCACTGCACCGTGACTTCTGCATGTTGGGCTCCAGTTCCCTGTTTACAATTGTACACTTCGGGATTTTGTGACACATTTCAACACTGGACCGATCAGACCTCTCCCTTAGCCATTGGTCTGCACTGTCTTTTCTGCCCATGACCCAGTCAGTCTCGCGCCCCATGACCCTCTCCTAA s canFam2.chr12 3395551 890 + 75515492 tgtgatttattggt-gggaaatctggaagagacacagggttaaggaataaaaacaagagctcagttttgcaaatattaatttgagatattttattagagatctgagagagcatgttcattaagcagttggatttgtgagcctgaagcttagggcagaaattggtg----tcaagagacatccagagatcttcgtcagttatgaatggtattaaaggtcgtgagac-ataggtgataagtctagatagaaaagaaggtcaaagaatgtgacctaaaaaaaaaaaaagaatgtgacctaaaacatttagacatagagaagccagaaaggagggaaagggagcaaccactgaaatggaaggggaacctgcagaaagcagtgtccctgaaaaaaagaaaagaaagaagtgggagtgagcatctgcatcaaatgccactgggaaaataagataaggacagagaattggcctcctatctgttgaccttgccaaggaaggactcaggcaatggtagggacaagagcatgat--cagtggtttaaggagtgaacgggagctgagagaactatgggagCCTCTTGCTCCCACATC--TATTACGTGGTATAGTTAGACGTGAACCCAAatcttgattgtggtggtggtttaatggctgtatacatgccaagactttgatcaaagt-----------gtacattttGCCTGTCGATTTATTGCAAGTG-AGTTTAGCGTGCAGCAATCATACCTCAGGACCACTGTTAACATTACCCACCACCACCTCCACAAAGGAACCCGAGCTTCACCACAC-------------TGTTGGGCTACAGCTCACCGTTTACAACTCTACGCCGGATCGCCTTGCGACATATCTCAACAC---------CAGGCCCGTTCCTAAGCAGATGGACTGC---GTCTTT------------------------------------CTGCTCCTAA a score=4951 s hg19.chr6_ssto_hap7 1870984 93 + 4928567 AACACGCGCAGTCTCCTCTCTCTTCCCCTTCCTCTCGTGTCTTCCTTGCCTACCAGCCTCACCTGATGGGCTCGTGTTCTCTCCGTCCCCGAT s canFam2.chr12 72118581 91 - 75515492 AATACGCGCACTCTCTTCTCCCCTTTTCT--CTCCCGTTGGCTCCCTGCCTATCAGCCTCACCGGTGGGGCTCGAACTCTCTCCGTCCCCGAT a score=482 s hg19.chr6_ssto_hap7 1871077 5 + 4928567 CCACT s canFam2.chr12 3396441 5 + 75515492 CCACT a score=3961 s hg19.chr6_ssto_hap7 1871082 48 + 4928567 CGGGCTCCGGCAGCTGCTGCTTGGGCGCCTTCGGCATCGCGGTGGCAG s canFam2.chr12 72118677 48 - 75515492 CGGGCTCCGGCGGCTGCTGCCTAGGTCCCTTCGGCATCGCGGTGGCAG a score=44052 s hg19.chr6_ssto_hap7 1871159 1403 + 4928567 GAATATGCTTTTTaaaaaaacaaaaaacaaaacaaacaaaaaaacaGTATGCCTCAACTCCTTCATACTAGTAGGAAATTATTATGTTCATTCCTTGAGTCTCGCGGCGTCGGGAGGTCACGGCGTCAGGCTTCCCAGACAGTCGTAAACGCCATGTGTTTACGCGACTGGAGCAAGCGGACGCCGGCCCCGCTCCGTCATTGCAGGCCACGCCTCCACTGAACCAGGGCCACGCCCCCGAGATGACGGCGAAGCTCGCACGTGCGCAGCCCGGGGGCGGGGTTGGCCGCGCCAGCTTGGAGAGCCAGCCCCATCGGGGTTCCCCGCCGCCGGAAGCGGAAATAGCACCGGGCGCCGCCACAGTAGCTGTAACTGCCACCGCGATGCCGAAGGCGCCCAAGCAGCAGCCGCCGGAGCCCGAGTGGATCGGGGACGGAGAGAGCACGAGCCCATCAGGTGAGGCTGGTAGGCAAGGAAGAAACGAGCAGAGGGGGAAGAGAGAGGAGACTGCGCGTGTTTTAAGAGAGGGTCATGGGGCACGAGACTGACCGGGCCCGTGCGGGAGTTACTGCGCATGCGTGCCGTGG-GCCC--------------GGGAGGAGTTTGCCGGGGAGGAGTGGGTTTGGAA---------------------------------------------TCGGGGTTAAAGGAAAGA---GATCCAG-----------------------------------------ATGTCGCACGTGACCTAAGTGAGACTGGGCGAGATAAAAGAAAGAGCATATGGCACCGAGGGAGAGATGGGGAGAAATGGGAAAA----CCTTGCTTAAAAAATTTGGACATCCGCCCCACCATACACTGTATTC-CAC--CAGGAATATATGAGCCCTGCCTCGACCTCCCCTTCCCCCTGCGCGCGCATACACACACCTT-GGGAGCCTGTGATCCCCCTTGTTTCTCAAGAGAGGGTGACTCCTTCATGGTTTCTTTCTTAAGACACCCCTCTCACTCAACTGGAGCAAG-----AGTGTAGATTTTTGATGTTGGAATGAGGGTTAAGGTTTACTTAAAAAGCAGCGAAAGTTTGTTAAGCGCTTGTTTTTAATTAAGCACTCTATATACTGTGCTTTGAGAGGGGAAGGAAAAAAACATGAAGATATCTTCCCAGGGTTGAAGTCAGTTTTAAGGGGGACATAAATGGACACAACTAACCCCAGTAGGTACACAGTAACTAATtttaaaagcacttattggatgcctactgtataccaggtactgtgtggaggaagtgggaatgtagagataaaagataagactttccctcaagggacaacccagtatggtgaagggtcagagcattaaccagacagacagtggttgtcagagtatgatgaaggtgcttaagaatgttatgggactgtagaagagaggaggagcatctactcagacaggtaag---ggagtgtcagcaaagcctcccaagaatatgtaatagct s canFam2.chr12 3396446 1383 + 75515492 GAAAATGC-------AAAAGC---AAACAAAACA-----------AGCATTCCTCTTCTCCTTCGGCCTAGTCCTAAATTACTCTGTTCGGTACTCG-GTGACGCAACGTCATCGAGTCACGAC-CCAATATTCCCAGAAAGCCCACGGCGCC--GTGCTGACGTCGCTACCGC-GGCGCACGCTGGCCCCGCCCAGTGGCCGCGGG-----------------------CACGCCCCCGAGGTGAC-GCGCCGTGCGCACGTGCACCGCGC-GGGACAGGCCCGGCGGCCGCGGAGTGGAGAGCCCGCCCCGTCCGGACCCCACGCTGCCGGAAGCGGAAATAGCGCCCGGCGTGCCCGGGGTACCTGTAACTGCCACCGCGATGCCGAAGGGACCTAGGCAGCAGCCGCCGGAGCCCGAGTGGATCGGGGACGGAGAGAGTTCGAGCCCCACCGGTGAGGCTGATAGGCAGGGAGCCAACGGG--AGAGAAAAGGGGAGAAGAGAGTGCGCGTATTTTAGAAGTGGGTCACGGGGTGTGAGAAGGACGAG--------GGGGGCGACTGCGCATGCGTGCAATGGTGCCCGAGGGTGGAGGATGGAGAGAAGTTAAAGGTTGAGGAGGTAGCGTGGAATGTTGTAGAGAAGTCATGCAATGGTGCCCGAGGCGGGGGGGGAGGTCGTGATGGGGGGCAAGAGTCGGCCCAGGCTGGAGCGAGTTGGGTGGCAGCGAAAGAAAGCGCCGGGCTATGGCGCACGAG-TTTCAGTGGGACCGGACAAGAGGCGACGAAAAGCATATGGTGCCGCGGGAGA---GGGGAGAATTGAGAAAGACCTCCTCTCTTTG-----TTGGACGTGTTCCCCACC--ACACTGTATCCACACCACAGGAACTTGTCAGCTGTGCCTCG----------------GTGCCCTCACCCACACCCCTTCAGGAGCC-----------------------AGAGGAGGGCTCCCTCTTGAGCTCCTGCGTAATACA--TGTCAGGCTCATCTGCAGCAAGAGCGTAGTGTAGCTACTGGGTGTTGGAATGAAGGTTAAGCTGT---------GTATGGAATGTTTGTTGAGTAGCTGCCTGAAATTAAGCACCATGTATACTGTGGTTAG---GAGAGAGAGAAAAAATATGAAGACATCCTCCCAAATTTGAAGGCACTTCAAGGGGAGAGA-AAAGGGATACAAACAGTTCTAGTGGGTACACAGTGACTAAGTTTacgagcatttattgggtgcctgttgtataactggtgctgtgtaga-gaactgagaacgtagagataaaaaataagacttgccccaaaggggc-atggagtttagtggaaggg-acagcattaat----cagaaagtggttgacag----tgatgaatgtggttgagaatgccatgagactacagcggc---gagaagcatctactcagacagatagggtaggaatgtcaacaaagcctcccagaaatatgtggtagct a score=28434 s hg19.chr6_ssto_hap7 1872859 719 + 4928567 gagtttattcttgaaagatcatcgtgaattagcaaggggaagcgcattccaagccaag---gaagtttgtg-gaaggtagagatgtaggcaagCCTGACTGGTCCCACTAGAGCCTGGTGACTAGTGTgatgaagtcagaaagatgctcaggagacagataatgaaaggctttagatgccattccgaggagtttaatcctaaagacattaagaaggaaggcccattgaagtgcataaggaatgattatgaacagttcacct--gtagcactgagcaatggagaatgaatggccttgaactggtcaaga-tggaggtggggagaccatttagggggctctggccatgatctaggtgagaagtggtaaggggataagccaaggcc-tgaagaataaagagttactaaggaggcggcattgatcggaactgagaactgattaaatgaagggagaag----taaggttgacacttaagtaacccagtgactagtagactattaactgaaagcagtaatggacaggagagtaagaagtggaaagagataaggtgaacttctgaatgctgagttaggcgtttct-gaggatttctaaaaggaaatggcaagaagagagtttgtttagtcactgtggagagacaactatactaggagtaaagacacaggcaagtatagttgaagtgctggatatggaagagtcccctagagagtgtttgcagattgaaccaaaaagaag s canFam2.chr12 3397829 692 + 75515492 gagttgattctggaagagtcagtatgagttagccaagggaggagcattctaagcagaggaagaagtatgtgcaaaggTAAAAAC-TAGGTGATCCTGGCTGGTTCCAATATTG---GGTGACTAATGTGATGAGGTTAGAAAGATGTTCAGGAGACAATTAAT--AAGGCTTTATACACTATTCCAAAGGCTTTAATCCTGAAGACATTAAG--GAAGGACTTTTTTATGTGCTTAATGATTG-----GATCGGCTCATCCTGACAATACTGAGCAGTGGAGAA-----GGGCTTGAATTGGTCAAGATTGGAGACAAGATGACTGTGTAAGAGGCTCTGGCAATGATCTAAGTGAGAAGCAGTAAGAGAGTAAGCCAAGACAGTGGAGACCAAAGAGTTATTGAGGAAATGGCATTGAGCAGGTCTGCTAACTGACTGAATGAAGGAAGAAGAGCTTAAAGATGACACTCGAGTAACTCAGAGGGTAGTAGACTATTGCTTGAAATCAGAAGTGGCCGGTAGGGTGGGGAATGGGAAGTGATAAAGTCAGCTTTTGATTGCCAATTTGGGGATTTCTGGAGAACTTCTAAGAGTAGGTGGGAACAAGAGAGAT--CTTAGGC------------------TACAAAGTAAAAAACCACAAGCA--TGTTGTTGTAACGTTGAGTGTAAAGGAGTCTGCTAGGGAGAGTATGCAGATTAAAGCCAAAGGAGg a score=1195 s hg19.chr6_ssto_hap7 1874573 66 + 4928567 TCTGTGTTGATAAGGTGAGCTGATCAGGTTTTTCCTTCTTAGGTACTTCAGTAGATCCTTCCTCCT s canFam2.chr12 72117403 57 - 75515492 TCAGTATTGTCAGGATGAGCCGATCCAATC-------ATTAAGCACATAAAAAAGTCCTTCCT--T a score=3418 s hg19.chr6_ssto_hap7 1874639 52 + 4928567 AATGCCTTTAGGATTAAACTCCTTGGAATAGCATATAAAGCCTTTTATTATT s canFam2.chr12 3398927 52 + 75515492 AAAGTCTTTAGGATTAAACTCTTTAGAATAGCTTATAGAACTTTTCATTACT a score=14194 s hg19.chr6_ssto_hap7 1874694 395 + 4928567 CCTGCACAATTTTTCAACTC--TCACACTAGTCACCCAATACTGGGCTCAGATTTTTTTTCTTTAACTTTTTTGTTTGTTTTTTGTGGTTTGTTTTTTGGGGAGGAGGAGGGCCCCAAACTTTgaaatgtgttctggatggaggatgcagattaagcaaagacagacataagcgtgcctgggacttcataaaggaacagaaagaagccagtatcgagaccagaggtgtgggtagggaaacaga-------aaagatagggtAGGGCCATTTTAGTCTGTGAAGCCTTTAATTATTGGAATTGTCTCTCGTTAACTCTAGTTTTTTGGAGAAGTAGATGCACCATAAAACTTTCCTGAATAAATGATTACTTTGAAATACATGGAATTCTAGTCTGAGAATATTT s canFam2.chr12 3399167 334 + 75515492 CCAACACTTCTTTTCAGCTCATTCACACTAGTCACCCAATGTGGGAATCAGATTTT-------------------------------------------------------------------GAAATGTGTTCTGGATAGAAGACACAGATTAAGCGAAAACAGAC-CAAGTGTGTCTGGGACTTAATCAGGGAGCAAGGAGAGGTCAGTGTCCAGAACATAGGTGTGGGTAGAGAAACAGATACAGTAGAAAAGAGGATAGGACC-CTTTAGTTTGTGAAGCCTTACATTATAGGGAGTGTCCTTTGATAACTCCAGTTTTC-GGCACAGTAGATGGTCAGTAAAACATGCCTGAATAATTGATTACTATGGACTATATCAAGTTTTAGACTAAAAATACTT a score=931 s hg19.chr6_ssto_hap7 1875089 30 + 4928567 TAATGTAGTAGATGGCGGATACCATTGACt s canFam2.chr12 3399620 30 + 75515492 TAACGTGGCAGGTAGCAGAATTTGTTTATT a score=5968 s hg19.chr6_ssto_hap7 1875422 208 + 4928567 aattttttttttttaatat-------------------------------------------taaataCTGAAATGCTTAAGGGTAGAATTAGATAGCAGTGAATGGAAGGGATGTTTTGGAAGAGAA---GATAATAAATAGGCCTAAGCCTGAAGGGAAATCATGAGGCTG-----------CCTCCAGTAGGGG---------AGGGAGTTGGACATGGTC----CTCTACCTTCAGGGAAACAAGGATGGAGAGGGGGAGAGCTAGAATCTGTT s canFam2.chr12 3399650 277 + 75515492 TGTttattatttttattattttattattatttattaaaattattTGTTTATTTTAAACTAAATGATTATCGGAGTGCTTCTGCATAGAGTTGGATAGCGGTTGGTGGATGGGGTGGTTTAGAGGGGAATATGATGGTACGTAGACCTGTACAGGAAGAGAAGTCGTGAGGCTGCTGGTGCCTCCCTTCTGATGGGGGCAGGGAGAAGAGGAGTTAGACATAGTCCCCTCCCTACCTTCAAGGAATCAGGGTTGGATAGAAAG-GAGCTGGAATTTGTT a score=8127 s hg19.chr6_ssto_hap7 1875630 203 + 4928567 GAATCTGTTTTGGCTTTAC------------TGGGAACACAGGCTAAACAGTCTCTCAGGTTACTCTCTAGAATGAAAG-----CACACAGACAGGTAAATATGACACAATGTGATTTGTGCTATAAT----ATTCAAGCAGAACAAGTAAGGCATagactgaggtgttcatttgcttaccagataactctatttacatggcctataggttttacaaacaacgt s canFam2.chr12 3400106 224 + 75515492 GATTTTATATAAGATTTCCCACTTTGTTCCATGGGAATGCAAGCTAAACAGTATGACAGGTCACTCTCTGGGATGAAAGATGAATGTACCAACAGTTAAGTACAATGCAGTGTGATTTATGCTAGAATGTTAATTTGAGCAGCGCAGGTAGAGCAGAGGTCCAGGTATTCATTTACTTACCAGACCACTCTGATTACACGGTCTGTGCTTTTCACCAATGACAT a score=2568 s hg19.chr6_ssto_hap7 1876238 71 + 4928567 ttctcttccactgcctccttaattaataaatggtaccacttagcccagctaattttgccag-ctaaaaacac s canFam2.chr12 3400396 70 + 75515492 GGCTTTTTTAGTGTATCCTGAGCTGAT-AGTGGTACCAC-TAGCACAGCTAATTTTGCTAACCTAAAAATAC a score=1594 s hg19.chr6_ssto_hap7 1876309 23 + 4928567 aggagtcatctctgagtgctctt s canFam2.chr12 3400612 23 + 75515492 AGGAATCATCTCTGAATACTCTG a score=1720 s hg19.chr6_ssto_hap7 1876661 61 + 4928567 cccacctctagccccatcctatgaattcttctttatgtccgcttgtcaccaccacccagac s canFam2.chr12 3400652 56 + 75515492 CCCACTTTTGTCTTCACCTTGTGAATTCTACT-----TCTCCCTTCCACTGCTACCAGGGC a score=17372 s hg19.chr6_ssto_hap7 1877319 280 + 4928567 TTGTGAGACAGTACAAATATTTAAGGAGTGATAGTTAAGCTAGAAAAATAATAAAATAGGATAGAGGCTACAGAGATCTTTGCAGGGGGGATCAGACTGCTTTGGAATTTGCAGATAAGCATTCACGATGTCCGCTTAACTTTCTAGACAAAGTGGTGAAGAAAGGGAAGAAGGACAAGAAGATCAAAAAAACGGTGAGAAAATGAGGGTTGAGGATAAGAAATGACTATGGATGTTTCCAAGCTAAATAAATAGCCATGTGAAGGAGGTGGGAGGTCCA s canFam2.chr12 3400719 267 + 75515492 TTGTGGGACAGTACAAATGCCTGGGGAATGATAG----------AAAATAGTAAAATAGACTGGAG-CCACTGAGAGCTTTGCAGGGGTGGTCATGCTGTTTTGGGATTTGTAGATAAGCATTCACAATGTCTGTTTAACCTTTTAGACAAAGTGGTGAAGAAGGGGAAGAAGGACAAAAAGACCAAAAAGACGGTGAGAAAATGAGGGTTGTCGGTAAGAAATGACCATGGATATTTCCAACCAAAATA--TGGCCATGTGGAGGAGGTGGGGGCTCTG a score=57088 s hg19.chr6_ssto_hap7 1877759 945 + 4928567 GACAGGAGGTAAGGTGAGGGTGGAGTGGAGGGCCAGTGGGCCAATGTGTGGCAGAGCACAGCCTGCTTGGATTGCTCTTGGAAACATGTTTACCTGTAGCTTAACTCCCTTTATAGTTCTTTGAAGAGCTGGCAGTAGAAGATAAACAGGCTGGGGAAGAAGAGAAAGTGCTCAAGGAGAAGGagcagcagcagcagcaacagcaacagcagGTACAAGTGCCACAGGGCCCACCAATCCTGGGAGGCATCTGGGTTCCACCAACCCCTTTCCAGCCCATGTTGCTCCATTCAGCTGATGGGGAACCCTCTGTGAGGCAGAAATACAGCAGGGGCCTGGGCTTCATTTTCTCACTGTTCTTTTGCTCTCAGCAGCAAAAAAAAAAGCGAGATACCCGAAAAGGCAGGCGGAAGAAGGATGTGGATGATGATGGAGAAGAGAAAGAGCTCATGGAGCGTCTTAAGAAGCTCTCAGTGCCAACCAGTGATGAGGAGGATGAAGGTAAATGACCTGAGGGGGAATGGGTACCTGGAATCCATGAGTCATGGAGAGTGA--TACCTCATACCCTGATCTTCAAGTTGGATTCAATTGGGGGGCCAGACATTGTAATTCTTTCCTATCTCATGTTCTCCCCCTGTCATTTCAGTACCCGCCCCAAAACCCCGCGGAGGGAAGAAAACCAAGGTAAGCCATCTGTGTGGTAAACGGAGACTCCAAGGATGCAACCTTGACCATCCTACTGACTTCTGTGGCCCTTTCATTCTCTAGGGTGGTAATGTTTTTGCAGCCCTGATTCAGGATCAGAGTGAGGAAGAGGAGGAGGAAGAAAAACATCCTCCTAAGCCTGCCAAGCCGGAGAAGAATCGGATCAATAAGGTGACAGTGGTGGCTCGATCAGTCACTCTCACTCCATTTAGCACCTTCTGGCCATGGTGGAGTAATTTC s canFam2.chr12 3400986 888 + 75515492 GAGAGGAAGGAAGGTGAGGGTGGACTGGAGGGTCAGTGGGCCTATGTGTGAGGGGGC---------------TGGTCTCAGAGCCACATTTACCTGTATTTTACCTCCCCCCACAGTTCTTTGAGGAAAAAAAAATAGAAGATAACCAGCCTGGGGA-GAAGAGAAGCTGCTTAAGGAGAAGGAGCA-------CAGCACCA-----AGCAGGTTCAAGTGTCAGGGGGTCCGCCAACCCTG----------------------------TCCAGCTTACATTGTTTCACTCAGCTTATGGGGAACTCTCTG--GGGCAGAGATGCAGCAAGGGCCTGGGCTTCATGGTCTTACT-CTCTTTTCCTTTCAGCAGCAAAAAAAGAAACGAGACACCCGAAAAGGCCGAAGGAAGAAGGATGTGGATGATGATGGAGAAGAAAAGGAGCTCATGGAGCGTCTTAAGAAGCTCTCTGTGCCAGCCAGTGATGAGGAGGATGAGGGTAAATGACCTGAGGGGAAATGGGTTCCCAAAATTCCTGAGTCATGAATAGTAAAGTGCCTTGTTCCTTGATCTTTGAGTTGGATTAGACGGAGGAACCAGACATTATAATCATTTCCAACCTCATCTTCTCCCTTTGTTATTTCAGTCCCTGCCCCCATACCCCGAGGAGGGAAGAAAACTAAGGTAAGCCATCTGTGTGGTAAACAGAGACCCCAGGGTTGCAACCTTGACCATTCCACTGACTTCTCTGGCCATTCTATTCTCTAGGGTGGTAATGTTTTTGCAGCCCTGATTCAGGATCACAGTGAGGATGAGGAGGAAGAAGAAAAACATCCTCCTAAACCTGCCAAGCTGGAGAAGAATCGGATCAATAAGGTGAAAGTGGCAGCCCTGCTGGTCACTCCCATCCCATGTAGCACCTTCTGGCCATGGTGTGGTAATTCC a score=2054 s hg19.chr6_ssto_hap7 1878722 46 + 4928567 TTCTCGGTCTGTCTTACTTATACTGTTAAAATCATCTTTTTAGAAT s canFam2.chr12 3402186 45 + 75515492 TTCTAGATCTGTCTTATTTACACTATC-AAATCAGCTTTGTGATAT a score=4132 s hg19.chr6_ssto_hap7 1879084 130 + 4928567 CCATTTTTATCACTCAGAAATCTACAGTGATTCTGT-TGCTTTAAGCACAGAACCTGAAACAAAGCCCCAGGTCCTTGCTCTTCTACTTGTGACTCTTCTGCGTGTGCATCTTAGTCCATGTCCATTTGAG s canFam2.chr12 3402231 120 + 75515492 CTGTTCTCATCATTCAGAAGTTTGTAATGATTCTGTGGGCTTTAGACTTAAAATCTGAAACAAAG-----GATCTTTGCTCTTCCTCTTGTG-CCCTTCTGCAAGGGAATTCTTGCAGA-----ATTGGAA a score=6982 s hg19.chr6_ssto_hap7 1879214 166 + 4928567 CTCTTGAGAAAGCCTCCAGTGCTAGTGCCACTCACTCTGGTGGCGCACTTGCCTGACTTATAATCCTTAGCCTTGCTGACGTTCCCTAGTTATCTCTTCGCTATCTAGTCTGAAGCTGGAGGGTAGGGTTTTTCTGGGTCTCATTTTTCGTCAGCAGCACTCAATA s canFam2.chr12 3402829 163 + 75515492 CTCTTAGGAAGCCTTGCAGTGCTAGTGCCACCCACCCACATTGCTCACTTTCCTGACTCA-GTCCCTTAGCTTTGCTAACATCATTTACTAATTTCTTCACTGTTTCATTTCAAGCTGGAAGCTAGGATTTTCCTAGATCT--TTTTTCCTGAGTAGGACTTGGTA a score=12068 s hg19.chr6_ssto_hap7 1879890 222 + 4928567 ATGGTTAAC-----ACAGTAGACTCTCTAGAAATGCTTATTACACAGCAAAGTAGCACAATAA-TTTGTATGTATGTGTGTA---ATGTGTATGTGTGTCTCCTCCAGGCCGTATCTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAGGGAAAGGAAGAGAAGTCAAAAGGGAAGGCTAAGGTGAGAG-AGTAACTAGCAGGAGGAGGTATTGGGGCCCAGGAATTAAAA s canFam2.chr12 3402992 232 + 75515492 ATACTTAATTTCTAGTTCTAGTCTCCCTAGAAATGCTTAGTAAACAACAAAGTAGTGAATTAACTTtgtatatgtgtgtgtgtgtatgtttgtgcgtgtgtTCTCCAGGCTGTATCCGAGGAACAGCAGCCTGGGCTGAAGGGCAGAAAGGGAAAGGAAGAGAAATCAAAGGGGAAGGCCAAGGTATTGGCAGGTATTGGCAGGAGGAGGTGCTGGGGCTCAGGAATTAGAA a score=12469 s hg19.chr6_ssto_hap7 1880432 175 + 4928567 CATTTCATCAGACCTG-TCTTTTCCCTATTAGCCTCAAAATAAATTCGCTGCTCTGGACAATGAAGAGGAGGATAAAGAAGAAGAAATTATAAAGGAAAAGGAGCCTCCCAAACAAGGGAAGGAGAAGGCCAAGAAGGCAGAGCAGGTGTGTA-TTTGGTGTTGGGGCAAGGTGGAA s canFam2.chr12 3403224 177 + 75515492 AATTTCATCAGACCTGCTGTCTTCCCTGTTAGCCTCATAATAAATTTGCTGCTCTGGACAATGAAGAGGAGGAGGATGAAGAAGAAATAACAAAAGAAAAGGAGCCACCCAGACAAGGGAAGGAGAAGGCCAAGAAGGCAGAGCAGGTGTATATTTTGGTGTTGGGGGAAGCAGGAG a score=5714 s hg19.chr6_ssto_hap7 1881042 138 + 4928567 ttctataaagggccatatagtaaatgtttttggctttgcaggccacatacaatctctatcacatattcttttttttttttaacaactctttgaaaatacaaaaattatttttataaagttcaggagctatataaaaat s canFam2.chr12 3403401 129 + 75515492 ttctgtaaagggccacagaataa---tttatggttttggggaccacatgcaatctctaatacgta-tccttttattttaaaatgactctttgaaagtat-aaaaccattctt----agctcgtggaccatataaaaat a score=6396 s hg19.chr6_ssto_hap7 1881180 273 + 4928567 aaatgtcaggtcagccttggcccatgggctgtagtttgcAACACCTAATCCAGTGAagaaagggcc-tggaatttatctcagatgatctgggtcctggctctgcc-ttcactggctgtgtgaccttgaatacatcttcccatccccttgggtctcacttgtctcctttgtgtgatagaaggaggagtccggagatctctagggtccctatgcgtctggcacttcctaattctgtgattcTGCTGGATTCCTCTGACTGTGCACTAGAGCTTCCTG s canFam2.chr12 3405589 233 + 75515492 AGGCATCAAGTGAAATCTGGCCCATGGCCCAT-----TCACCTCCTGATTcagagaggaaaggaccctggtgtaagcctcagatgatctgggttctggctctgtcagtcaccagcagtgtgactttt--------------tcacctcgaggctta----------ttatctgtaaga--------tctaatgctctctgaggtccctgcacctctagcactttctaattctg-gattcAGTTAGGTTTCTCAG----TGCTCTGAGTGTTTCTG a score=12827 s hg19.chr6_ssto_hap7 1881761 349 + 4928567 GGCTACCTGATCTTTTCTTTGCATGTTAACAAGGAAACCACAGAAACTCATTT-TATACAAATGAAACTCTTGAAATCCATTTACTCCACCTTCAGTTACATTGTATTGGGAGTTACATTTATAGGGACATAACGCGTTGTCACATTTCATAAATACACATTCATACCATTTGTCTTGTACCATTCCTGGTAGCAGAAATTAATAAAGGACCTCAGGGAGACCAGGGGCTGG-GTATGAGAATGAGAGAGGATCC--CAAGATATTTTAGGACTCTGAGTAGTGAAGGAAAGAGCTGGG-GCAGGGACAGGGGGCAGATGATGTGAAATCTGAGTTCTAGAAGGAGTCCCTAGt s canFam2.chr12 3405822 338 + 75515492 GACTTTTTTTTTTTTTTTTTGCATGTTAGCATATAAGCCACAGAAACTCACTGATACATGAAGAAAACCTGT----TTCATTTATTCCCCCCTCCCCTA-GTGGTATAGGTAGTTA-ATTTGTAGATATGTA--TAATTGTTATATTTTATACATACTTGTTTATACTATTTGTCATATACCATTGCTGGCAGCAGAAGTGGCTGAAGGACTCCAAGGAGCCCAGGGGTTAGTGTGTGAGAGAGAGAGAGGACCCAACAAGATATTTCAGGACTCTGGGTGGAGAAGGGATGAGCTATGTGCCTGGATGA-------ATGACATGAAATCTGAGTTCTAAAGGGA-TCTTTTGT a score=10466 s hg19.chr6_ssto_hap7 1882426 153 + 4928567 TTTTGACCATCCCCGGGTTCTCACAGGGTTCagaggaagaaggagaaggggaagaagaggaggaggaaggaggagaGTCTAAGGCAGATGATCCCTATGCTCATCTTAGCAAAAAGGAGAAGAAAAAGCTGAAAAAACAGGTAAGACCTTGGT s canFam2.chr12 3406160 144 + 75515492 TTTTCATCACCGCCTGGTTCTCACAGTGTTCagaggaagaaggagaagatgaagaggagga---------aggggaGTCTAAGGCTGATGATCCTTATGCTCACCTTAGCAAAAAGGAGAAGAAGAAGCTAAAGAAACAGGTAAGACCTTGGT a score=4082 s hg19.chr6_ssto_hap7 1882612 85 + 4928567 CTTCAACTAGGGGACATGCGA---TTGGGGACACGAAGGAAAGGTTTGGGGGCTACTCCAAGTAAAACAATCGGAGTAAGAAAATAAT s canFam2.chr12 3406715 88 + 75515492 TTTCAGCTAAGGGACATCTGAATTTGGAGGGCAAGAAAGAGAGCTTTGGGGGACACTACAAGAAAAACAATTAAAATAAGGAAAGAAt a score=961 s hg19.chr6_ssto_hap7 1882705 34 + 4928567 GTGAACCTTATCTCAATGTCTGATGACATG-GGCT s canFam2.chr12 3406976 35 + 75515492 GTTAACTTTTTCTTGCTGTCTATTGATAAATGGCT a score=97347 s hg19.chr6_ssto_hap7 1883059 1766 + 4928567 CTGTTTCATGGTGATGGGAAACTGGTAGACTGTGGCTTCAAATGTAGTTTTTCCTACCTTCTCAGATGGAGTATGAGCGCCAAGTGGCTTCATTAAAAGCAGCCAATGCAGCTGAAAATGACTTCTCCGTGTCCCAGGCGGAGATGTCCTCCCGCCAAGCCATGTTAGAAAATGCATCTGACATCAAGGTAAGGTCTCAAGGGGCCCCTTCCAGTCCACTTACCTAGGGAAGAGCCAGTTCTCTCATCTTCCCTGAGTGGCTGTGGTG---------------TGTGAATGGGTTAGTTCAGTGGGAAGAAAGATTGGAGGCATTTTCCACACCTTAGGTTCTGCCAACTTGAGCAAGAAGATAGAAAAACCAGTAGAAGT---GGGGTCCACCCTTGGCAGAAAATAGTGTGGGACAGACTAGACTAGCTGAGGATGCATGGGGCTCCCATTACAGGCAGCGAACAGGGCGGGGACCGGCTGTGGGGAGAGGAAGGGGATTATGCTGGAGGTAGCGGTTTGTCAGGGGCTTCCCTGCAGGGAGAAAGTGGCCGCTCCTGTCCCAAAGGGAGAATTTTCATGTGATCATCCCTTCCCTCTGCCACCTCTTTCCTGATGGCTGCAGCTGGAGAAGTTCAGCATCTCCGCTCATGGCAAGGAGCTGTTCGTCAATGCAGACCTGTACATTGTAGCCGGCCGCCGCTACGGGCTGGTAGGACCCAATGGGTGAGAAGAGGAGGGAGCTGGAGGCAAAAAAGGGC-----CTGGAGGGAAAAGAAGAGATTTCTCAGTGGTGGCCAGGTCCTAATAGCTTTTATTCCCCAGCAAGGGCAAGACCACACTCCTCAAGCACATTGCCAACCGAGCCCTGAGCATCCCTCCCAACATTGATGTGTTGCTGTGTGAGCAGGGTGAGACCACTGGGGAGAAAAG-----GGGCTTGGTGGGGTGGGCAGT-TGGGTAGAAAAGCCAGCCAGCCAAGAATAGAAGAAATTGTGGCTATGGAGTTGGAA------GGGATGTGGAGGGAGACTGGAGACCGGGAAAGGGATGCTAAGGAAAGGAGGGGAGGGTCAATGAGGAACTTGAGAGTGTTTTATTTGGAACAAGTACAAAGAGCTGGGCAGGGTCAGGCAAAACAGAAATGTAATTGAAGGGAAAGAAAGATGAGACTCTTGGCTCTTGAGGCTGCCTGACTGTTCTCCCTCTGCCTCCCAGAGGTGGTAGCAGATGAGACACCAGCAGTCCAGGCTGTTCTTCGAGCTGACACCAAGCGATTGAAGCTGCTGGAAGAGGAGCGGCGGCTTCAGGGACAGCTGGAACAAGGGGATGACACAGCTGCTGAGAGGCTAGAGAAGGTAGAGGAGATGGCGCAGGGGACACGGGCAAAGACTTGGGGGTTCCTGGGACCCTCAGACGTGTGTCCTCTTCTCCCTCCTCCCAGGTGTATGAGGAATTGCGGGCCACTGGGGCGGCAGCTGCAGAGGCCAAAGCACGGCGGATCCTGGCTGGCCTGGGCTTTGACCCTGAAATGCAGAATCGACCCACACAGAAGTTCTCAGGGGGCTGGCGCATGCGTGTCTCCCTGGCCAGGTGGGCCATTCACCTCACTGCCCTC--CCTTCCAGCCTCAGACCACCGGGGCCCTTTTCCTCTTTCCCTTCTCATTCTTCCAAGGCCAATAGGGAGGCTCAAGGCTTACCTCTCCCTCCT-TACTATCTGTGTTGTGAGAACTTAGGGTCTTTCTCTATTTCTCTCCCTACTTGGTGGTGAGTTCTCATCAACATACCCTGCA s canFam2.chr12 3407011 1708 + 75515492 CTGTTT----GTGACAGGTAATTGACAGACAGTGACTTCATATGTGGCTTTTGCTTCCTTCTCAGATGGAGTATGAGCGCCAGGTGGCTTCATTAAAAGCAGCCAATGCTGCTGAAAATGATTTCTCTGTGTCCCAAGCGGAGGTGTCCTCCCGCCAAGCCATGTTAGAAAATGCATCTGACATTAAGGTAAGGTCT-GAGGGGCCCCTCCCAACCATTTTGCTCAGGGAAGCACCA-------CCTTTTCCTGAGGTGGCCGTGGCAGCCAAGAAAGTAAACTGTGAGTGGTTTAGTCCACTGG-AAGACAGCTTGGAGGCGCATTCCATACCTTGAGTTCTGTCAGCTTCAGTGAGAAAGTAGGAAAACCAACAGAAGTAGAGGGATCCACCCTTGGAGGTGAA----GTAAAATGGGCTAGACTGGCTTAGAATTTGGGAGATGCCAATTCAAAGCAGTGAACAGGAAGGAGACCAG-TATGGTAAGAGGAGCG---TCATGCTGGAG----CTGTCTGTCAGAAGCTTCCCAGCACTTAGGAAGTTATGGCTCTTGT--------------------GTACTTGTTCCTTCCCTCTGC------TTCCCTGATGACTGCAGCTGGAGAAGTTCAGCATCTCGGCCCATGGCAAGGAGTTATTTGTCAACGCAGACCTATACATTGTAGCCGGCCGCCGCTACGGACTAGTGGGACCCAATGGGTGAGGAGAGG-----GCTGAAGCTATAAAGGGGAAGGAGCTGGAAGGAAAAGAAGAGATTTCTCAGGGGTGTCCTGGTCCCAATAGTTCTCATTCCCCAGGAAGGGCAAGACCACTCTCCTCAAGCATATCTCCAACCGAGCCTTGAGCATCCCTCCCAACATCGACGTGCTGCTGTGTGAGCAGGGTGAGGCCAGTGGTGGGATGGGTTTGTGGGGTCTGAGGGGTGGGCAGTGGGGGTAGAAGAGTCGACTGAC----AGTAGAAGAAATTGTGGTTATGGAGTGAGAAACGTTTGGGCAGGGGGCAGGGATTGGGGACTGAGAGATGGGTGCCAACGAGAGGA----------------GATATAGAGAATATTTTATGTGAAACAAGTACAAAGAGTTGGGCAAGGCCAGGCAAACCAGAAGTAGAGCTGAAGGAAAGAAGGAATGGGAGTCTTGGCTCTCTAGGCGACCTGTCTGTCCTTGC-CTTCCCCTCAGAGGTGGTAGCAGATGAGACGCCGGCCGTGCAGGCTGTTCTTCGAGCTGATACCAAGCGACTGAAGCTGCTGGAAGAGGAGCGTCGGCTCCAGAGGCAGCTGGAGCAGGGAGATGACACAGCTGCTGAGAGGCTAGAGAAGGTAGAGGAGATGGCGCAGGGGACATGGGCTGAGACTTGGGAGTTCCTAGAACCTCTAGACATGTGTCCTCTTCTCCCTCCT-CCAGGTATATGAAGAATTGCGGGCGACCGGGGCAGCAGCTGCAGAGGCCAAAGCCCGGCGGATCTTGGCCGGTCTGGGCTTCGACCCTGAAATGCAGAATCGGCCCACACAGAAGTTCTCGGGGGGCTGGCGCATGCGTGTCTCCCTGGCCAGGTGGGCAACCCACATCACCACCCTCCTCTTTCCAGCCTCCATCTACTGGGA--------GGCTTTCCCTTCTCCATGTTTTAGGGCCAGTAGGGAGTTGCAAGGCTTCCTGCTTTCTTCTGTATCATCTGCATTGTCA-AACTCAAGATCTTTC---------CTCCCTACACTGTGGTGTATCTTCAGCGACATGTCCTGCA a score=1290 s hg19.chr6_ssto_hap7 1885187 21 + 4928567 CGAGAACTTCTCTGAGGAGAG s canFam2.chr12 3408719 21 + 75515492 TACGAGCTTCTCTGAAGAGAG a score=85264 s hg19.chr6_ssto_hap7 1885287 1760 + 4928567 CTGACCCTGCCCTCTGCTA-CCCACCCTCTAGGGCACTGTTCATGGAGCCCACACTGCTGATGCTGGATGAGCCCACCAACCACCTGGACCTCAACGCTGTCATCTGGCTTAATAAGTGC----------GTTACGGCCTTTGCATCATTGGTTCCCATTCTGCACTTTCTTCCCCTTCCCTCCCTGCCCTGTTTTCCTTTAGCCCTTCTCCACTGTGCCTGTGAGTGGAGCTCTATTCAGACCCCCCTTTCCCTCCCAGCCCCCGTTGTCTGCCTGCTTCCTCTGAATTCTCTCTCACTTGACCACTGTGACACTTACACCCTGTTCTCTGAAACCCAGCTACCTCCAGGGCTGGCGGAAGACCTTGCTGATCGTCTCCCATGACCAGGGCTTCTTGGATGATGTCTGCACTGATATCATCCACCTCGATGCCCAGCGGCTCCACTACTATAGGGGCAATTACAGTAAGTAGGATTGTGTGTGGATGCAGGGAAGAGATAGAACCTCGAAAAGAGGC----CTGAGTGGGAGGGCCTATTTAGATAAACTG------AATCCTGTCAGAATTCCAGACAGTGATGCCTACC-CCATCACCACCAGTCCCTGGTTGTCCCTTTGCTGGGAAGAGGAGCAACCACTGATGCCTGGTCCCCTCTTCTGCCCCAGTGACCTTCAAAAAGATGTACCAGCAGAAGCAGAAAGAACTGCTGAAACAGTATGAGAAGCAAGAGAAAAAGCTGAAGGAGCTGAAGGCAGGCGGGAAGTCCACCAAGCAGGCGGTGAGCACCTGAGGGACTT-CTGGGCTGGGGGCCACTGTTCTCTCCTGGCAGTGGAGGAAGAAGGAGACTCT-------GGAACGCTGGCCTACATTTCAAGGACTGCCGTGCAGGGCTCAGGTTTCTCTTTTTTCCTCTTCCTCTCCAGGAAAAACAAACGAAGGAAGCCCTGACTCGGAAGCAGCAGAAATGCCGACGGAAAAACCAAGATGAGGAATCCCAGGAGGCCCCTGAGCTCCTGAAGCGCCCTAAGGAGTACACTGTGCGCTTCACTTTTCCAGACCCCCCACCACTCAGCCCTCCAGTGCTGGGTCTGCATGGTGAGT-GCCGCGGGCCTCTGCTGCTCCACAGGAAGCACCGGAAGCATGTATGTGCACCCTAAATTCTCCACCAAGGCTGAGAT-TGCTCCTGTTCT-CCAAGGCCAGCACATGAGAGGGACTTTGCAGGGACTGAAAAGAATATAAA-----------TTGCTTCTTTTCGTGGCTTTCAGGTGTGACATTCGGCTACCAGGGACAGAAACCACTCTTTAAGAACTTGGATTTTGGCATCGACATGGATTCAAGGAGTGAGTTGGCGGGGTTGCCTCAGGGATGTGTAGCAGGAGCCACAGGGAGAGTCTCTGGGGACCTCTTTGACCACCTGTCTTCCATCTTGCAGTTTGCATTGTGGGCCCTAATGGTGTGGGGAAGAGTACGCTACTCCTGCTGCTGACTGGCAAGCTGACACCGGTGAGTCCTGGAGCCAAGGAGGGAGAGCATGAGAAATGTGAAGACACAGCTGCTTTTGCCAGAAGCTGGAATCAGGGAGCCTCTCGAGAATGT---AGAGTTAAATACAGAACTCATGATAGATGATTCATTTCCCTAAGAGGGGCAGTAGAGGAGGAAAGAGCT--TAGATCAGTTCAGGGG-GGAGAGCTAAGAGAATTAAGATAGAACTAGGGG------GCACACCCACGTGTTTTGGTTATACAAGAAATATATGTCTTTTATAGAACGATTAAAAATTGCATA s canFam2.chr12 3408778 1710 + 75515492 CTGATCCTATATTTTGCTGCCCCACCCTCTAGGGCGCTGTTCATGTTACCGACGCTGCTGATGTTGGATGAGCCCACTAACCACCTTTACCTCAATGCTGTCATCTGGCTCAATAAGTACATCACCCTTGATTACAGTTTTGACATCATGGGTTCCCATTCTG-----TCTTTACGATC---------------------TAGCCCTTT----------------------CTCTCTT----CCTCCCTTTTTTT--------TTGTTGTCGGTCTGCTT-CTCTGACCTAACCCTAACCTGACCATTGTGATATGTTCACACTCTTTTCTAAAACCCAGCTACCTCCAGGGCTGGCGGAAGACATTGCTCATCGTCTCCCATGACCAGGGCTTCCTGGATGATGTCTGCACCGATATTATCCATCTTGATGCCCAGCGGCTCCATTACTATCGGGGCAATTACAGTAAGTGAGATCATCTGTAGGGGGAAGAAAGCAA-AGGCCTTCGAGAAAAGGCCTTACTTAGAGGGAAGACTGGTAGGGATGCAGTGATGTTAAATC---TCCGGAGTCTAGGCAGTGATGCTCACCTCTGTCCTCACTGGT-CCTGGTTGTCCCTCTGCTGGGGAGAGAGACAACTGTTGATGCCCATCCTCCTCATCTGCTGCAGTGACCTTCAAGAAGATGTATCAGCAGAAGCAGAAAGAACTGCTGAAGCAGTATGAGAAGCAGGAGAAAAAGCTGAAGGAGCTAAAGGCAGGTGGCAAGTCCACCAAGCAGGCGGTGAGCAGCTGGGGGTCTTCCTTTTCTGGAGGGC----TTTTCTCAGTACAG----AGAAAGAGGGGGCTCTTTCTGGAGGGGCACCACCCTCCATTTCAGGGACCGCTGTGAACAGTGAAGATTTCTC-CTTTTCTCCTTTCTCTCCAGGAAAAGCAAACAAAGGAAGCCCTGACACGGAAGCAGCAGAAATGCCGGCGGAAAAACCAGGACGAGGACTCACAAGAGGCTCCTGAGCTGCTGAAGCGCCCCAAGGAGTACACTGTGCGCTTCACTTTCCCTAACCCTCCACCACTCAGCCCTCCTGTGTTGGGTCTGCACGGTGAGTGGCTGCAGATCCCAAC------------AGTGCTGGGTGGAAGCGTGTGCACCCCATGTCCTCCATCCAGCATGGGATCCATTTCTTTTCTCCCAAGGCCGGGAC----------CTTCAGGGTGACTGAAAAGAAAGTGAATCttttttttttttttttttttCCTGCTTCTCAGGTGCGACGTTTGGCTATGAGGGGCAGAAACCACTCTTCAAGAATCTGGATTTTGGCATTGACATGGATTCAAGGAGTGAGTTGGTGTCGAGTGCTTGGGGATGTGAAGCTGGA-CTGCAGGGACAAT-TTTGGGGACTTC--TGATTACCTGTCTTCCTCCTTGCAGTCTGCATTGTGGGCCCTAACGGCGTGGGGAAGAGCACCCTGCTCCTGCTACTGACGGGCAAGCTGACACCAGTAAGTCCTGGAGCCAGGCCAGGAGAGCATGACAGCTGTGAAAAGGCGGCTG--TTCACCAGATGCTAGAGTCAGGCAGCCCCCTTCTAGTGCTGAAGATTTAAATACAGAACTCACCACAGATGACTCATTTCCCTAAGAGGTGTTGTAGAAGAG---AGTGCTTGTAGATCAGGTGAGGGGAGGAAAGCAGGTAGAAGAGGGGTTGGACTGGGGGTATCCCTCCCTCACATGTGCTTTGGTTATACGAGAAACTTAAGTCTGTTATAGAATGCTTAGAAATTGTGTA a score=1109 s hg19.chr6_ssto_hap7 1887928 23 + 4928567 AGAAAAATCTGGAGATAACCAGt s canFam2.chr12 3410488 23 + 75515492 AGAAAATTCTAGAGGTCATTGGT a score=2713 s hg19.chr6_ssto_hap7 1888272 146 + 4928567 ttttagtggatatctttctccttttttctttgcaaatg------------------------------------------tgcatataa--tttttaacaaaaatgggctgtcatatgagttgttgtgtagctagatttttccaa----atatatcaagcatttttccatgc----aatt------------------------------------acttattTCATATGAGTC s canFam2.chr12 3410516 229 + 75515492 TTTTGGTGCATTGCTTTCCCCTTTGGT-TCTGCAAATGTAAAAAAatacatatatatatatatatatatatatatatatatatatataAATTTTTTAACAAAAATGGGCTCTCAGA----TTGTTTTATAGCCAGTTCTTTCAGATAATGTACATTGAGAATTTTTACATGCCAGTAATTATCCATGTACGTTCATGTTTTTGTGAATTTACTATGATTTATTTGATGTCAGTC a score=6776 s hg19.chr6_ssto_hap7 1888723 338 + 4928567 ttatttgaactttt---gtaatatattgccatctagtgtgttagaaagtttgtagccatttctgctctctctag--cagtgttgaga----ggccattttctcatatccAGAGATTAGATCTTTAGAAAGGTATTATTAGATTCTCCCCAAAA----CACTAAACTTGCCACATGAGGC-----CCTTACGATG-TACCATTCGTGAGTCTCGCTGTATGGAGAGCAGGTGTTCTTTGGCTGTGGT-TAGTCCCTCCTGCTTGTCCCTCT--------TGTC------CTCCATTTTGCTTAACTCCCCTTTTGTCCCTTAACTCTTTTACTTTGCTCACCATGCCTTTGTCATATTAGGG-GAACATCCCTG s canFam2.chr12 3410840 353 + 75515492 CTCTTAGGACTTTTACAACAACATATTACCATACAGTGCTTTAGATTGGGTGTAGCCCTCTTTACTCCTTCTAGGAAAGTGTTGAGAATAGAGCCCTTTTC-----TTCAGACACCA--------------CATTGCTAGAGCCTCTCACAAACTGTCTCTTAA-TCCCCATCTGAGGCAGAATCGTGAAAAAGATGCCATTGGTGGGTCTTGTTGGGTGGGAAGGGGGTCGTCTTTGTCTGTGGTCCCTTCCCTCCTGGTTCTCAATCTGTGTTTTGTGTCTCTCCTCTTCATTCGTCTGTCATTCCCCTTTGGCTCTGTACTATTCTCCTTTCCTGGGTGTGCCTTTGTCACATTAGGGAGAACATCTGGG a score=4456 s hg19.chr6_ssto_hap7 1889362 75 + 4928567 TTCCTTTTCTTATGCATACTTGTCCCTGGCCCATTTCTGGTGTTTGTCTCTCCTTCAGAAAAGTTGGTGTATGGa s canFam2.chr12 3411193 75 + 75515492 TTCTTTTTCTTGCATGGACTTATTCCCAGTCCAGTTCTAGTATTTGTCTCCCTTTCAGAAAAGTTGGGGTGTGGA a score=110973 s hg19.chr6_ssto_hap7 1889690 1905 + 4928567 AGCACCTTTTTCCCTTGCCCTCCTCTTAACTACTTTGTCTTCCCTTGCAGACCCATGGGGAAATGAGAAAGAACCACCGGCTGGTAAGTTGGCATTGGGATTTAGGGAAT-GATAATCTGATGGAGGAAGTGTGACTTTAACCGACCACCTCCCTCTCTTCTCGGGCAGAAAATTGGCTTCTTCAACCAGCAGTATGCAGAGCAGCTGCGCATGGAGGAGACGCCCACTGAGTACCTGCAGCGGGGCTTCAACCTGCCCTACCAGGATGCCCGCAAGTGCCTGGGCCGCTTCGGCCTGGAGAGTCACGCCCACACCATCCAGATCTGCAAACTCTCTGGTACCACT-TCAGGGGCCAGGGAGGGTGCCCTTCACCTTATCATTCATGTCTACAAACTGTACCTAGAG--------------GAACCGAGAATGAGGGAGCCTCAGCTCACAAACTGGCACATCTTGAGGGTTTGCCTTCAG-AATGTGAGGT-GCTAGGTGTGACAGCCCTCCCCTTCCTTTGCTACAGGTGGTCAGAAGGCGCGAGTTGTGTTTGCTGAGCTGGCCTGTCGGGAACCTGATGTCCTCATCTTGGTGAGTGAGCTGGGCTGTGGGAAAAGGGATAAGGGTAACAGTAATGGAAGACGGGAGTTGCAGTGCTCAGTCATGGAATTCCTCCTATGTAGGACGAGCCAACCAATAACCTGGACATAGAGTCTATTGATGCTCTAGGGGAGGCCATCAATGAATACAAGGGTGGTAAGTCAGCTGAGAGTGTGCCCTCATCCCTGCTCCATGGGGACCAAGCTGTAGTGTCCTTCACTACAGAAGGGCCTAGGACTCCCTTATTTCATGTTCTGATTCCCCTCTTTCTCCTTTCTTCCTGCCCTCTGTTGTTGCTATCTTTCTTCAAAGCTGTGATCGTTGTCAGCCATGATGCCCGACTCATCACAGAAACCAATTGCCAGCTGTGGGTGGTGGAGGAGCAGAGTGTTAGCCAAATCGATGGTGACTTTGAAGACTACAAGCGGGAGGTGTTGGAGGCCCTGGGTGAAGTCATGGTCAGCCGGCCCCGAGAGTGAAGCTTTCCTTCCCAGAAGTCTCCCGAGAGACATATTTGTGTGGCCTAGAAGTCCTCTGTGGTCTCCCCTCCTCT-----GAAGACTGCCTCTGGCCTGCAGCTGACCTGGCAACCATTCAGGCACATGAAGGTGGAGTGTGACCTTGATGTGACCGGGATCCCACTCTGATTGCATCCATTTCTCTGAAAGACTTGTTTGTTCTGCTTCTCTTCATATAACTGAGCTGGCCTTATCCTTGGCATCCCCCTAAACAAACAAGAGGTGACCACC-TTATTGTGAGGTTCCATCCAGCCAAGTTTATGTGGCCTATTGTCTCAGGACTCTC--ATCACTCAGAAGCCTGCCTCTGATTTACCCTACAGCTTCAGGCCCAGCT-GCCCCCCAGTCTTTGGGTGGTGCTGTTCTTTTCTGGTGGATTTAATGCTGACTCACTGGTACAAACAGCTGTTGAAGCTCAGAGCTGGAGGTGAGCTTCTGAGGCCTTTGCCATTATCCAGCCCAAGATTTGGTGCCTGCAGCCTCTTGTCTGGTTGAGGACTTGGGG-CAGGAAAGGAATGCTGCTGAACTTGAATTTCCCTTTACAAGGGGAAGAAATAAAGGAAAGGAGTTGCTGCCGACCTGTCACTGTTTGGAGATTGATGGGAGTTGGAACTGTTCTCAGTCTTGATTTGCTTTATTCAGTTTTCTAGCAGCTTTTAATAGTCCCCTCTTCCCCACTAA-----ATGGATCTTGTTTGCAGTCTTGCT--------GACAGTGTTTGCTGTTTAAGGATCATAGGATTCCTTTCCCCCAACCCTTCACGCAAGGAAAAAGCAAAGTGATTCATACCTTCTATCTTGGAACATGGGTCT s canFam2.chr12 3411272 1896 + 75515492 GACACTGTCTCCCCTTTCCCTTATCTTATC-ACTTGCTTTTTCCTTACAGACGCGTGGAGAAATGAGAAAGAACCACCGGCTGGTAAGTTAGCTTTGGGAATTAGGGAACAAAGAGTCTGATAGAGGAAGTATGATTTTCACAGACCACCTCCCTCTCTT---GGGCAGAAAATTGGCTTCTTCAACCAGCAGTATGCAGAGCAGCTGCGCATGGAGGAGACACCCACTGAGTACCTGCAGCGGGGCTTCAATCTGCCCTACCAGGATGCCCGGAAGTGCCTGGGCCGCTTTGGCCTTGAGAGTCACGCCCACACCATCCAGATCTGCAAACTCTCTGGTACCACTGTAGGGGGCTAGGGAAGATGTCCTTCTCCTTAATTTTCA--TCTCCAGACTGTACCTAGAGTCAGAAGAGAAGAAGAGCTAGGACTTGGGGAAACTCTGCGCA--------CACATGTTCA--GTTTACCTTCAGAAATCTAAGGCAGTCAAGTGTGATGGCCCTCCTCTTCCTTTGCTACAGGTGGGCAAAAAGCCCGGGTTGTGTTTGCTGAGCTGGCTTGTAGGGAGCCTGATGTCCTCATCTTggtgagtgagctggaccgcaag--aggggctaaaggtgacagtattggaa----ggaattgtaacgcttggtcatggaatGTCTCCTCCATAGGATGAACCCACCAATAACTTGGACATCGAGTCTATTGATGCTCTTGGGGAAGCCATCAATGAATACAAGGGCGGTAAGTTGGCTCAGGATGCAGACTC--CTCTTTTCCTTGGGGACCAGACTGTTGTGTCCCTT-----------GGCCAGGGCTCCCTTCTTTCAGGCTCTGATTGCCCTCTACCTTTTTCCTGCCTGCCCTCCATTCTCTC-ATCTTTTTTCAAAGCTGTGATTGTCGTCAGCCACGATGCCCGACTCATCACAGAAACCAACTGCCAGCTGTGGGTGGTGGAGGAGCAGAGTGTTAGCCAGATCGATGGTGACTTCGAGGACTACAAACGAGAGGTGTTGGAGGCCCTTGGTGAAGTCATGGTCAACAGACCCCGAGAGTG-AGTTTTCCTTCCTGGAAGTCTCCTGAAAAACAAGCTTGTGTGGCCTAGAAGCCCCCTTTTGTCTCCCTTTCTCCTCTTGGAAGCCTTCCTCTGGCCTGCAGCTGACCCAGCAGCTATTCAGGCACAGGAAGGCAGAGCATGGTCTTGACGTGACCAGGGTACCACTTTGATTGGTTCTTTCTCTCTGAAAGAC-TGTGTGTTTCAATTTTCTTCAGGTAACTGAGCTGGCCTTATCCTTGACATCCTGCCATATACAC-AGAGGTGACCTTCATTGTTGTG-GGCTCCAACCAGCCAAGCTTAAGTAGCCAGTTATTTCGAGACTCTCTTATCACTAAGAACCCTGCCTCTGGTCCACCTGAAAGCTTCAGGCCCAGCTGGCCCCCTGGTCTTTGAGTGGTGCTCCTCTTTTCTGGTGGACTTAATGTTGACTTGCTCATACAAATAACTGCTGCATCTCAGTGCTAGAGGCACG-TTCTGAGGCCTGTGCTATCACCCAGCCCAGGGTTTGGTGCCTGCAGTCACTTGTCTAGCTGGGGACTTGGGGACAGGAAAGAATGGACACTCAGCTTGAATCTCCCTTTACAAGGGGAGGAAATAAAGGAAAGGAGTTGTTGCTGCCCTATCACTGTTTGGAGATTTGTGGGAGTTGGGACTGTTCTCAGTGTTGATTTGCTCTGTTCCGTTTGCTAGCAGCATTCAGTA-TCCACTCTTCCCCACTAATACAGATGGCTCCACCTTGTAGTCTTAATGCATTTTAGATGGTGTT---TGTTTAAGGAGTCTC--CCTCCCTTCCTCCAGCCCTTCAGACAGG---AAGGGAAAGGGGTTCATTCCTTTCATCTGGGACTCCTGGGCT a score=28318 s hg19.chr6_ssto_hap7 1892214 858 + 4928567 TCTCATTGTCCAAGTTAATCTCATGAATGAGGAGGTGCTCTGCCCTGTGGCCAGGGACCAGGGTATTGATTCTCTCAAAAATTATTAAATCATCTAGCCAAAATGTACGGTACTGTGGGGTATATAAGAAGGGAAGAGACAAGATCTGCCTTCATTAATAGTCTGGTTAGAGAAGACTTA-AAAGTAAG-CATGAATAGATAATTAATTTGATCAATTGTCTAATATGTCGTACTCTAGATTC--TAAGTTGCCACATACTCAAAAAAGGGAAAGATTATCCAGGGCCTGATTATTTGACAGGGTCACTTGAGGGTAGATCTTGAAAAATGATGATTTGACTAATCAGGGACCAGGGAGCCATTTTTCAGAAGTAGGAAAAGAGCAGATCTCAGGCTTGGGGGGAAGAACAAGCTACTTGGGAGTTAATG---GATGATAGCTGCTGTGGCCATTTTTCTTAAGAGTTAGACTGGGGAGATGGGTTTGGAAAGTAAAATGCAAATGGTGGGTAGTGGTATTAGGTGGTGATGTGCAAGGCGTGCTGTAGAAACCTGCAGGGTGAAGCCCATAACTTTTGTTACGGGAATGGGGTAACTGAATCCTAAACTAG---CTAGGGGAGATAGGGATGGAAAGAGC-----AGATGTGGAGGTTGGGGAGAA--------GGGAGTGACAGGAGATATATCCAGTTCCAGAGGGAATAGGGAGAGCTG-TGTGGCTAAGATTTAACT--GTTTGGACATTTAATTTGGGGAAATTGTTTTCCAGCCAAGTGAATAAATAATACTGGACTTCAAGTACAAGCTTCATACAGGAAGTGAAGTTTTGGTGTGGAGATAGCTGCATAGTCAGGGAACACTCTAAATTAAAAAT s canFam2.chr12 3413168 785 + 75515492 TCTCATTGTCCAA-----------------------GCTCTGCCCTGTGGTCAGGGATCGCAGTACTGATCCTCTCAGAAATTCCTAAATCAACCGTCCTGTACAAACAACACTGGGG----TATAAAAAAGGAAAAGACAAAGTCTACC-TCATCAATAGTCTAGCTACACAAGACTTAGAAAATGAGACATCAGCCTAAGGGTGATTTGGTTAATTG-CCAATTTGTGGTACTCTAGATTCTATAAGTTGCAATTTGCTCATAGAAGGGAAAGATTATCCAGAACTTGATTATTTGACAGGATCACTTCAGGG-GCCTTTTGAAAAGGAAAAATTTGAATAGTGAGAGAACAGGAAGCCATTTTTGGAATCTAGGAAAAGAGCAGATCTAAGTCTT---GGAAAGAACAGACTGTTTGGGAGTTAATGAGAGAGCATAGCTGGTGTGGCCATTCCT----AGAGATAGATTGCAGAGGTAGATTGGGAAAGAAA-----------CCAGTGGTGACTTGAGCTGATGATG--------GGGCTGTGGAAGCATATGGAGTGGACCCCATAACTTC--TTGCAGG--TGAGGTAACTAAATGCTGAACTAGGGTATGGGAGGGAT-GAGAGGGAAAGGTCAAAAGAGGTGTAGGAGTTGGAGAGAATTCTAGAGGAGAATGATCT--GATGTATCCAGTTCTAGAGAGAATACAAGGCACTATTTTGGTTAAGAC---ACTGAGTGTGGACATCTATTTATGGGAAACTAT------------------AAAAATAATGGGCTTGAAGTACAGATTTTCTACTGGAAGTGCAGGTTTGGTGT---------------GTTAGGGAACATCTCAAATTAGGAAC a score=4737 s hg19.chr6_ssto_hap7 1893386 187 + 4928567 TCTT-ATGGAATTTGAGGGGGAAA-AGTCAGGGTCTTG----------------------------------------------------GCAgtgacctt----------------ggacaagccattagcc-------------------tcttgatacctcttttctcatctgtaaaatgaaggtggt---agttacctacttcacaggg---ttattaggggattcaatgtgtaa-taatacgtaaagtgccttaaaTTCTGTTGCTTTTGTTATATGT s canFam2.chr12 3414140 280 + 75515492 TCTTAACGGAATTTGAGGGGGAAATAATCAGGATCTTGAACCAAGCATCTGAGTAAGATGTTCCATGTGAAGTAATTTCCACAGTTGTATGAAGTAACTCTTGTCACAGAGCAATGGGGACCAGGCTTCAGGTCTGCTTACTAATGGCATGGTGTTGgtacct-tttcctcttctgtaaaatgaagatgataaaaaatacctaccttgtagggttattattaagggattagatgtgcaattattttgtgaagtgctttaaaTTT--CTGCTTTTGTTACATGT a score=5986 s hg19.chr6_ssto_hap7 1893898 217 + 4928567 TATACTTTTGCATTTTTAAGTTTTTACTTCGCTAGTCTAGTTGAGATGATACATAAAATATATAGGAATGTTATTTATAAAGTGAATACCAG---CTTGCATTTCAAATATTTGGTCACTAATTTCACTACTTCAAACATAAGTGAGAAAAGTACTTTAAGTACTCCAAAATAACTTTCCGCCACAGGCATAAATTTCATTTCTCTCTCTGTTCTTTTTt s canFam2.chr12 3414484 171 + 75515492 TACAC-TTTACA-CTTAAAATTTTCAGTTCACTAGTCT-----AGAGGATTCGTAAAATATGTAGGAATGTTATTTATAAAAGGAACACCAAAATTTTACAATTTAAGGTTTTGATCACTAATTTCAC---------------------AAGTACTTCAGATGCTCCAAAA-------CCGCTTCTGACACAAAT--------------TGTACTTTTTC a score=3136 s hg19.chr6_ssto_hap7 1894303 89 + 4928567 ATATGTGCTGTTAATGGAATTAATAATTCACCTAAATGTGGGCAAAAGTATGCCCTCC----------AAAAAGCAGCATAGA---AATGGAACACGAAAGG s canFam2.chr12 3414660 101 + 75515492 ATATACATAGTTAAAGGAATTATTAA-TCACTTAAATATGAGCAAAAGGTTGCTCCTTCTCACCCCAAAAAAAGCAGCATAAACACAATTGAATCCAGAAAG a score=8483 s hg19.chr6_ssto_hap7 1894770 492 + 4928567 ATTAAAGCCAAagcctgaaggtaggaaagg-------------------aagagccttc--agggaagggaccaaaatgtgcaaagaccctgaggctgaaaagagctgaacatggtcaaggaatggctggagctgagaacttgagcatGCGCCAATACACACGGGGCCTTATATGCATAGACAGCAGGTTGGGATGTGATGAGGAGAGGctgagcaatgggaggccattggttctgtttagccaggagtgcaaactgattcagttttc--atttttacaaaattgctcctggctgctaggtggcaaatagtgggtgtggggagacagggaaaagagatgccaggagaacagctCAATATTACTTTGGAAAGAAGATTCTCTTCATCTAAGAATGGAATGGAAGGGAGATAATGTAGACTCAGATATTTCCATGTGAAGGGAAGGGAAAATGTTGCTCACAGTGGATGGGACTCACTTTTTCCCAAGCTTTGGTGCCAGAGAATCAAGAAGAGTAg s canFam2.chr12 3415886 414 + 75515492 cttaaagccagagcctgaagatggtgaagggactagatgagtggggaagaagagcccccctagggaagaaaccaccgtgtgcagagaccctgaagctg---------------------gGAAGGGTGGAAGCAGAG-------------GCCAGGACACTCTGAGCCT-GCAAGCCTTGATGGGGAGTTAAGGTACAGTTTGGGGAGA------AATAGGCGGCCACTGATC---TCTACACAGTGGTAAGAATTGA---GGTTTTCTCATTTTTACAAAATT----CTGGTTTCTGGGTGG---------------AGGACACAGGAA-----GATACCGAGAGAAGGGTTGGATACTGCCTTGGAAAGA-GCCACCCTTCTT-------TGG---GAAAGAAAAATTAGGTAGACTCAGAT---------TTAGTTGAAGGCGAAATGGTGTCCCCATTGGATGGGGCTCGCT----CAGGAGTTCTGGTGCTAGA----CAGGAGT--TAG a score=9869 s hg19.chr6_ssto_hap7 1895557 370 + 4928567 GGTTTGCTGAGCAGCAGTAAGTGTAGAATCAATGCTAACATTAATTTGTACTGGGCTAAGATAGTAGGATTTTGTGATTTTTCAACATTAGGTCTACTGCCCAGGAGTAGGAATGAAAGAAATAGGATA------ATGATTCTGAATTGAAGATAGACCCCGTTGCACCTGGGGAAGGATTGACAGAAAGAGAACGTTGAATGTCACAAGGGTATTTTAGAGGGAAAAAATGGAAGCAGAAAGGAAAAACAGACTGAAACGGTAGAGAGAAAAGTGCTTGCAGGGAGGGCTTGGTGAAGAAACA-----------TCATTGTAGTGAAATGAATGAAATGTTCAACCTCTCTCCCCCTGCAAAAAAACAAAAAACAAGGAAAATCTT s canFam2.chr12 3416300 340 + 75515492 CACTTGGCAAGCAGCAGTA------GAGTTGCTGCTAG---TGATTCGTACGGAGCCAAGATGGTAGGATTTTGCGTTTTTGCAACATTAGGTTTGCCGCTCGGGAGTAGGAATGGGAGAACTAGAACACTCCTGATGAGCCAGAATTAGAGATGGAGCC-GGTGTGCCTGGCGAGGGATTGGCAGAGAGGCTACAGCGGG------AAGACTATTTGGGGGTGAGGGAAATGAATGAGAAAGAACAGACCGGCTGACATGG-------AGAGGTGCCTGTAGGGA---CTTGGTGAAGGTATGGATGGAGTGGGTCAGTGCC-TGAAATGGAGAGGATGATCAGCCTCC---------------ACCAAAAAA-----AAAATCTC a score=1356 s hg19.chr6_ssto_hap7 1896569 33 + 4928567 GAATTTTCATAAATGATTTGAAAGAAA----ATGAGC s canFam2.chr12 3416653 37 + 75515492 GGATTTTCGTGGAGAATTTGAAGGAAAGATGATGGGT a score=2622 s hg19.chr6_ssto_hap7 1897197 59 + 4928567 GAGCTTATTCTTAAAATACAGTAAAAACTTTAAGCTCTCTTTTAAGGTTCTTGTGGCTT s canFam2.chr12 3416690 54 + 75515492 GAACTCATTTTTAAAATA--GAAAAAACTTTGAGCCCT--TTCAAGGTTCT-GTGGCCT a score=5369 s hg19.chr6_ssto_hap7 1897401 313 + 4928567 CTTAGATTATGTCTTCTCAGGTCTTCTCCCAGTGCACACAGCAACAACAGACTGACCTGAACA----------CCTCCGCCCACACACACCAAGCCTGGGCAAGGGGAAGGTAAAACTACCCACTTTGGGCCTA--CATGCAG-TGAGGCCTTTCAGATACTGATAAAACATTGTTGCCCCCTCATGTGGCCAATGCTGGAAATA-CAGCTGAGACACGTA-TTCCAGGGCAGTGT-------------agcagcctcagcaactgggaatttgttagaaatgcatatctcgggatccatcct-gacctactaaatcagaaT-TTTGCTGGACCCTACCCCCA s canFam2.chr12 3416744 308 + 75515492 CTTAGTTTGGGTGCTCTCAGATC----CTAAGTGCACAGAGCCACTTAACAGTGGC-TAAGCAGGGAGTGCAGCCTCTG-----------------TGGGCAAAGGCAAAATAAAAATAACCCCATTGGCCTTGTTCATGTAAATGAGGCCCGTGAAATGTAGGT-------TGttgccc--tcctgtggccaattcttgaaacagcagccaAGAAACTCGGTTGTACGGCAGTTTTCAGTGCTTTCCAATGGgcatcagcacctgggaacttgctagaagcaaa---ctcaggatctctcccagaactactga-ccagaatatgtgctggactcattcctca a score=3404 s hg19.chr6_ssto_hap7 1898373 57 + 4928567 tgttttctaataagctcttcagatgatcctgatgaatgctaacagacttgaaaaccg s canFam2.chr12 3417052 56 + 75515492 tgccttctaaaaagcccctcagatgattctgatgaatgttaagag-tttgaaaacTG a score=1536 s hg19.chr6_ssto_hap7 1899116 25 + 4928567 AGAGCCACTTT----GGGAAGAGCAGTCT s canFam2.chr12 3417454 29 + 75515492 AGAGCCACTTTTTGAGGGAATAGCAGCCT a score=3237 s hg19.chr6_ssto_hap7 1899963 166 + 4928567 GAGATCTACTCTGTATCCTAGAGTATTTTATGTACTTTTTGAAGCATTTTTTCACCAGTACTTAATAGCAACTGTTAGATCA------AGCATTAGCTCC--AGAGGAGTAAAAATCAGATTCCACAGA--TTTGTACTAATGTATCTAACACAGGTGGTAATGGC--------TTTAAAAAAA s canFam2.chr12 3417718 163 + 75515492 GGGACTTACTCTGTA-CCTGTGGTTCCTTATAT-----TCAAAATACTTC---------ACTTAATACCCA-TGCTATCTCACAACAGAACTTCAGCTCCTCAAAGGACTAAA-----GATTCCATAGAGGTTTGTACTAATGTACTTAAAATAGAGGACAATGGCCGTTCTTGTTTAAACAGA a score=298822 s hg19.chr6_ssto_hap7 1900437 4878 + 4928567 GTCCAAACACACTAGGGGTTAAATAAGCTGCTTCTCTTTCCACTGTTTATTATTAATGTACAAAATATACAAAACCAAAA--AAAAAAATACTCATCC-TCAAATCCATTTTGGCTCTAACCCAAGACCCTGCACAAAACCCAACCAATCCACTGTTTTCATAGAAAACAACTGATGCCAAAGT----GAAGGAGAGAACTGGGAAAGGGCAAAATCATCTTGTTGAATCCACCCAGGAAGGCGCCTGGTGGGGATTCAGAGGTGGTTGACAGGGTGAAGTACCTGGAAGCCTCCTTCACGCTGGCAAGGTTCCAGGTGGGAGCAGGGAGTGAGCTGACTCCCAAAGGCAGTGCATGTAGTGTGACTT-TCAGGCCCAGCACGCCGGGCCCAAGTTGATGAGAAGCTGGTCTCACTGAAGTATTTTATCAAGTCTCCAGACTG-GCTATAGTTGGCAAAGGCAGACCAGCACCACCGGTCTCACCTCTGCCAGCTAAAACTTGCACCGGATGCAG-ATACGAGTTCGCCATCATCGAACCTAGCAGACCCAGGACGCAGACT-GGGTGTTCACAGAAAGTTG-AAGGTCCCACTTGAGAAAGGACTAAGAATGGTGAGCCCACGCTGGGGGAGGGGTGGGGATGATGTGTGTTCCAGAACTCAAATCCAGC-TGATTGAGCCCTCTCAGTGCAGTGGGATATACAATACCCCTTTC-AGCATCTCCCCACCCCATGAGGAATAATGAACTTAGCTGGGATGATTTCTTAAGTGCAGCTGATCCTGTGTCAGAGTTCTGTGTGCATGTGG-GGACCCGCAATAGAAGGGTAGGGGTGTTCGCCAGGATAACCAGCTTTAGGTTCTCAAGCATTAAGGGTAATACTGGAAAGGGGTTTGGGG-TACAGGGCGAATCTTCTCAAAAAGTGAAGCCAACTGGGTCTCCTCTTCAGCAGTCCAGG------AACGTTTCCAGTCTCTCTCCTCCCCAGACTGGAGGAAAATATGTACATCAATGCGCACCAGTGATCAGAAAACCCCCAGGAACCCAAGCAAGTGGGAACTGAGGGGGCCGGCTCCTCATCAGCTGGGGAAAAGGGAAAATGGGCCTCACAGAAGCCATAACAGGGTGGAAAGAGCGAGGCTGCAGTCCACAGGGGTTGTGTGAACAGGGCAGGCAAATG-----GTCCCTAGGGCAGGGGGGGCCCATTGACACCCGGGTGGTAGAAGGCACAGTTGTTCTCATAGCGGCAGTTGCCCTTCATCATGAAATGTCGGCAGACAGGGCGGTTTGACATGTCTGTGGGAACGATGGCAAAACAGTTAGACAGGAAATAGCT--GAGGGCAATGCCACCCTCACCACCCC---------TTGTCCATGACATCCTGAGAACTGTCTTTCAGAGACA------ATCTTGGGGATTTGGGGGAAGGGCATAGAGTAGGAACTGCTATGCATACTAGGACATCAAAGAGACGGGTACCTCACGTTCTGCCTAGCTACCAACAGTAGTGACTCTCACCCACTCCCCAAAAGCTTGTATGGGACAACCAAAAGGCATATGGGGGACAGGGAGCATCCTCACCTCCTCCATGGCTGTGGCCTCCATCGTGCCCTCGGTGGCCCCCTCCCCCGTGGCCAGGACCATCATGGCCACGGTGCTCATGAGGTGGCGGCCCTCGATGGTCATGGCCTCGGTGACCAGGGACATCATGAGGCCGGTGGCCATGGGGCCCCCCGTGTCCAGGGCCTTCATGGGGACGATGTCCACCACTTCCACCCATGCTTCCGCCAGGGCCTTCGTGGGGGCGATGTCCACCACCGGCACCCATTCCTCCGCCAGGGCCTTCATGGGGACGATGGCCACTGCCACCACTGATGCCACCGCCAGGGCCTTCGTGGGGACGATGTCCTCCACCCCCACCCATGCTACCACCAGGGCCTTCATGGGGGCGATGCCCACTTCCCATGCCACCGCCAGGGCCTTCGTGGGGACGATGTCCACTGCTGTTGCCCATGCCCCCACCAGGGCCTTCGTGAGGACGATGCCCACCACCTCCAACCATGCCCCCACCAGGGCCCCCTCGTCCATTTGGGGGTCCTCCTCCAGAGCGACCTCCTCTGGCGCCTCGGAATggaggaggaggaggaggaggTTCGTTTCCTCCTCGGCCACCTCGGCCTCTATGGTATGGTCCAGGACCTGGTCCTGGACCCCCCCGCATTGGGCCACCCCGCATAGGGTCGCCCGGGCCATCCCAGAAGGGATCACCTCCCCGGGGAGGGGGTGGAGGACCCAGAAGACGTGGACCCACTGGCCCACCAGGGCCTCCATGGGGACCTGTAAGGGGACAAAAAAGAGAGACAGTATCAGCTAC----------CAGGAACTGCCATCTCCCAACCTAAACCACCACCTCCCACCTTCCAGTCAATCCTATACTATTATCAGACTGAAATTAAGCAGATAAGCCCATTCCAACCTTTTACTCACCACCTACCTGGCATAGGTCCCCCAGGTCCAGGGGGAAAGTGCTGCATGCCCTTGGGGCCCCCAGGACCCCCTGGTGGGAAACCATTGGCTATTGGGCCAGGGCCTAGGAGTCCATGTGGCACTGTTAAT--GAAAACAAGAGTAACACAGCATGAGCACTCTAGAAGACTAGCATGATCTCCCATTTAGGTGCAACCAACTGACCCTCTCAAACCAACCTGGCAGAGCAATGCTCTCTCTGTCCAGTCTTCCCCTCCCATTTCTTGCCTAGTGGCCACAGCCCTGTATTCTTCTGCATCTTTGAAACCCTGCTTCCC-----CCAACTCCACTGCAGGCTTCCTCCCCCAGTCCCCTGGGGCTGGCCCTGAAGATTACCCAGCATCTGCTTGATCTTGTCCGAATAGTCTGGTTGTTTCAGTAGTTCCTCTGAAGGATGACTGTTTGGGCTACCCTGTGAG----GATGTAAGAAGGCAAAGTCAACAGACAGAAAGGGTAACAACCATGGCGAAAGATAGCGCCAAAGATTAGGGGTAAGTGGGTAGATGTGGAGAACTGGGGTAAGGCGAATGGGAGACAGTGAGGAGAGCGAGCTTAAGGAGGCTCCACAGAAGGTGGAAAAGGGGAAGGAGGGTGC--GTACCATGATGGAGGTGAGGATCTCTTGGACATTAATGCCTCCTCCTCCAGGGCCTTGGGGGCCCTTTCCAGCACCCATGCTTCCCATAAGATTGGCCAGAACTGGAGGCAACTTGGAGCCTCCTGCCCCATCAGGTGAGCCACCTGACCCCCCAGGTTCCAGAGTCTCAACATACGGAGTCTCATCCATGGAACACTCCTGAAAGA--AGAACAAAAAAAATCAGGACTGACAGAAC--AGAGACATTCTCAT---------------ATGAAAGATGCACCGAATTCAATGACCATCACAACTTCCATCATCACAGAACATTGACTTACCTCATCTAGGGGGATGAGTTTAGGGGGTATGGGCTCGTAGGGCTCAGGATCAGGCTCATGAGGACTATCAGGAACAACACAGGTGAGAG-------AAAAAAGAATGATAGTCAAGTTATTAATTCAGACCCTGAAAGTAATTTCTAACCTCCACCCCGT----AATTACCCCAGCTCATGTTCC-CTCAGGAGTGTCCAAGCACTCAACAT--------------CCCAGGGCACGAACCCCACTCTGCTCACCTCTCCTTGTTCAGGAAGAGCTCCTGAAGGATTCCCTTCTCCCGCTCAGCCTGGATATATCGCTCCTGACTATTGCTTCCAGGGGTGACAAGAGGTGAGGGCAGAACCAGGGGCCGGGGGCACACCCAGGGCACCTTCTCCTCCATGTTATCATGGCTCAGACGCCGCGCTGTCTCAAATGCATGTCGGTCTGACAGTATCTCTCGCTTAGCCGCCTCACCAAAGTCCTTGATCTTATTCACATTTACTGTCGGCAGGGGAAGAAAAGCAAGAGGGAAAGTAAGCA-CAACCAAGTCCTTTCAAAATCCCTTAA---------------------------------------ACACACCTATTACGTAGGAAA--TGACCTCTTACCTCGTTCAGTTTCATCCAATTCAAAATAGAAATATTCTCTCAGTTTGCCTTCCTCAGGCCATGTCACACTTTTCCTCTTCCTGCCTTTCCGGGTCAGTTGGTTAGGATCTCCAGGACTCTCCACTGGCTTGGCATCCAGAGCTCCTGGCTCCAAAGAGGCTGGAAGCAGAAGAGGTTTCAGACCCAGATCCCTCCTTTCAGAAAACCCCCCAAACTGAACCAGTTTCTAGA-TTACCTGTATCCATGAGCTCCGGGACTTCAACAGGGGGAACCGGGGTGCCTGGACGGTCTGCGTCCATTGCCTCAGAAGGTGGTGCTGGTTCTGGGGAAGAAGGTTTGGCTGTGCTTGGTTCTGTGCTCGTTTTCCCTTCAAAGGGGCTTGGCTATTGTGAAAGAAAAGGAAGTTAATGAACTGACTGGAAAGCCAAG-----GGCAAGGCAATTAGTCCAGGGTCCCAGGCACAGTCCCCCAACAGTTCCTATATAAAGGAAGACTCTGTCTCCACAATGTCTCACCTGCACCAGTCTATATCCAAGGCAAAACGCCTCTTGTTGTCCTCCCCGACAACTCCTAGCTGCTGTGCCCTTTCTTCTACTTTACCTTTTATACTCTGTCACTGAAACCTACTTCTGGGAGCCCATACCTTGGCAGCCGTAGGTGACAGTACTTTTTTTTTCTTCTTAATTTTGATGCCTGGAACAGGGGCTGAATTAAGAGCATCCAGAAAGCCCAGGCCCTCCATAGCTACAAAAAGAAAGAGCACCAAATGGCATCATCAGACCTCCTTCATAATCCTACACCTGCAAACACAGTCCAGGCATAAAATGAGCCAGTGAAGACCCTGCCTCAACTTAGGACAC-GATAAGCTCAAGAGGACCAGGAAGCACATGCAGGAGGATTCACACAGGA s canFam2.chr12 3417881 4866 + 75515492 GCCCAAACACACTAGGGGTTAAATAAGCTGCTTCTCTTTCCACTGTTTATTATTAATGTACAAAATATACAAAACCAAAAGAAAAAAAATACTCATCCCTCAAATCCATCATGGCTCTAACACAAGACCCTGCACAAAAGCCAACCAATCCACTGTTTTCATAGAAAACAACTGATGCCAAAACCTCGGAAGGAGAGGGCTGGGGAAGGGTGCG-TCAGCTTGCGGCACCCACCCAGGAAGGCACCTGGTGGG-ACTCAGAGGTGGCTGACAGGGCAAGGGAGCCAGAGGCCTC----ACACTGACAAGGTTCCAGGTGGGGGGCAAGAGTATGCCAACTCCTGAAGGCAGTGCATGTAGTGTGACTTGTCAGGCCCAGCGTGCCGGGC--AAATTGATGAAAAGCTGGTCTCAATGAAGTGTTTTACAAAGTTTCCAGAATGAGCTGCAGGTG---AGGGTGGACCACCACCACCAGTCTCACCTATGCCAGCTGCAACTTCCACTGGCTGCAGGACATGAATTGGCCATCACTGGAACTAGCAGACCCATGGTGCAGACTTGGGTGTTCACAG---GTTGCAAAGTCTGACTTGAGAAAGGACTCAATGTAAAAAGCCTGTGTCCAGGGAGAAGTGGGGATGATGTAT--TCCAGAACTCAAATCCAGCCTGATTGAGCCCTCTCAGTGCAGCGGGATATATAATACCCCTTTTTACCATCTCCCCACCCCATGAAGAATAATGAACTTGGCTGGGAGGATTTCATAAGTGCAGCTGATTCCGTATCAG----TTGTGTGCGTGTGGAGGACCCACAATAGGAGAGTAGAGGTGTTCTCCAGGATAACCAGCTTTAGGTTCTCAGGCATAAAGGGCAATACTGGAAAGGGGTTTGGGGCTATAGGGCCAATCT---CAAAAACTGAAGCCAACCGGGTCTTCTCTTCAGCCATCCAGGGTACAGAATGTATCCAGTCTCTCTCCTCCCCAGACTGGAGGAAAATATGTACATCGATGTGCACCAGTGATCACAAAACCCCCAGAAACCCAAGCAGGTGGGGACTGAGGGG-CCGGCTCCTCATCAGCAGGGGAC--GGGACAGTGGGCCTCACAGAAGCCATAAGAGGGTCGAAGGAGCAAGGCTGCAGTCCATGGGG--TGTG-GGGCAGGGGGGGCAGAGGAGGCAGTCCCTAGGGCAGGGGGGGCCCATTGACACCCGGGTGGTAGAAGGCACAGTTGTTCTCATAGCGGCAATTGCCCTTCATCATGAAATGTCGGCACACAGGGCGGTTGGACATATCTGTGGGAACGATGGCAGAACAGTTAGA----ACACGGCTCAGAGGTCAATGCCACCCTTGCCTCCCCACCCCCACCCTGTCCATAGCACCCTGAAAACTAGCGTGCAGGGAGATACGGAATCTTACGGATTTGAGGGAAGGGCAAAGAATAGCAACTGCCAGGCATGCT--GAAAATAGGGGGACGTGTCT-----GTCCTACCACAC--CCGGGGGGAGTGATGAT-----GCTACCCCAAAACTTAAATGGAACA-CCAAAAGCCATGCAATGAGCAGGAACCATTCTCACCTCCTCCGTGGCTGTGGCCTCCATCGTGCCCTCGGTGGCCCCCTCCTCCGTGGCCAGGGCCATCATGGCCACGGTGCTCATGAGGTGGTGGCCCTCGATGGTCATGGCCTCGGTGACTAGGGACATCATGAGGCCGGTGGCCATGGGGCCCCCCATGTCCAGGACCTTCATGGGGGCGATGTCCACCACCAGCACCCATTCCTCCACCAGGACCTTCATGGGGGCGATGTCCACTGCCTCCACCCATGCCACTGCCAGGGCCTTCATGAGGACGATGGCCACTGCCACTGCCCATGCCACCACCAGGGCCTTCGTGAGGACGATGTCCCCCACCTCCACCCATGCTACTGCCAGGGCCTTCGTGGGGGCGATGCCCACCACCCATACCACCACCAGGGCCTTCATGAGGACGATGTCCACTGCTGCTGTTCATGCCCCCACCAGGGCCTTCATGTGGACGATGACCACCACCTCCAACCATGCCCCCACCAGGGCCCCCTCGTCCATTTGGAGGTCCTCCTCCAGAGCGACCTCCCCTGGCCCCCCGGAAGGGAGGAGGAGGAGGAGGTGGTTCATTTCCTCCTCGGCCACCACGGCCTCTATGGTATGGTCCAGGACCTGGTCCTGGGCCACCCCGCATTGGGCCACCTCGCATGGGGTCACCTGGGCCATCCCAGAAGGGATCACCCCCTCGTGGAGGGGGTGGGGGACCCAAGAGACGCGGACCCACTGACCCACCAGGGCCTCCATGAGGACCTGTTATGGA--AAGAAAGGGAGACCGTATCAGCGACTTGTTACACTCAGGGATGGCC-TCTCCCAGCCTAA---CCTACCTCCCACCTTTTGGTCAATCCTACACTATTACTAAGCCAAAATTAAGCAGATAAACCCATTCCAACCTCTCATTTCCCACCTACCTGGTATAGGTCCTCCAGGTCCAGGGGGGAAGTGCTGCATGGCCTTGGGACCCCCAGGACCTCCTGGTGGGAAACCATTGGCTATTGGACCAGGGCCTAATAATCCATGTGGCACTGTTAATTAAAAAACAAAATATAGTCAGCAAGAGGATTCTAGAAGAGTGGCATGACTTCCTCCTTAGGTATGCCCCTCTGGCCCTCTCAGACCAACTTGTCAGACCAAAG----CTCCAACCAGTCTTCCCT------------CCTAGCAGAAGCA-------ATACCTTTGCTC-------ACCCTGCTCCCCCCACACCAACTCCACAGTAGGCTTCCTCC---------------CTGGCCCTGGTGATTACCGAGCATCTGCTTGATCTTGTCTGAATAGTCTGGTTGCTTTAGCAGTTCCTCTGAGGGATGACTATTTGGGCTACCCTGTGAGGCAAGGTGAATAAAGAGCCAGTCAACAGAATGCAAGGGTAAAAACTAGTAAAGAAAAGAGAGCTAGATG-AAGAGGTAAGTGAGAAGAC---AACTACTGGGGTATACAGAAAGGCAGA--------------------------TTCCAGACAAAGTGGAAAAGAGGAAGGCGGGCTCATATACCATGATGGAGGTGAGGATCTCTTGGACATTGATGCCTCCTCCTCCAGGACCCTGGGGGCTCTTCCCAGCACCCATGCTTCCCATGAGATTGGCCAGGACAGGAGGCAACTTGGAGCCACCTGCTCCATCAGGTGAGCCACCAGCTCCCCCAGGCTCCAGGGTCTCAATATATGGGGTCTCATCCATGGAACATTCCTGCAAGAACAGAACAATCAGGACTAGCTTTGAAAGAATGAAGAGACATTCCATTTGAAACTGAAAAATGCTGAAAGACGTACTAAGATCA------ATCACAAC-TCCACCACCACATAGCATATGCTCACCTCATCTAGGGGGATGAGCTTTGGGGGTACAGGTTCATAGGGTTCAGGATCAGGTTCATGAGGACTATTAGGAATGCCACAGGTGATGGGACAAGAAAAAAAAAAAGATAGTTAAATTATTTATTCAAGCCCTCA---CATTCCCTAGCCCCCACCCCCTTCTGAATTACCCCAGGGCATGTTCCTCTCAGGA--GTCCAAGCACTTAACGTGGACATGGTTCATGCCCAGGGTGTGAACCCGGTTCTGCTCACCTTTCCTTGTTCAGGAAGAGCTCCTGAAGGATTCCTTTCTCCCGCTCAGCCTGGATGTATCGCTCCTGGCTGTTGCTTCCAGGGGTGACAAGAGGTGAGGGCAGAACCAGGGGCCGGGGGCACACCCAGGGCACCTTCTCCTCCATGTTGTCATGGCTCAGACGCCGGGCCGTCTCAAATGCATGTCGGTCTGACAGTATCTCTCGCTTAGCTGCCTCACCAAAGTCCTTGATCTTATTCACATTTACTAGTGGCAAGGAGAGAA----AAGAGAAAATATAAGCACCAAACAAGTCCTTTTTAAACTCTCTAGACCCCAAAATAAGTAAATAAATAAAAATAAACTCTCTATACCCATCTACTACACAAGAACCTTGACGGCTCACCTCGTTCAGTTTCATCCAGTTCAAAATAGAAATATTCTCTCAGTTTGCCCTCCTCAGGCCATGTCACCGTCTTCCTCTTCCTGCCTTTCCGGGTCAGCTGGCTGGGATCTCCGGGACTCTCCACGGGCTTTGCATCCAGCGCTCCTGGCTCTAAAGAGGCTGGAAGCAGGAGAGGTATCAGATCCAGGTCGTTCCTTTTAGAAACCCCCCAAACCTGAACCAATTTCTAGACTTACCTGTATCCATGAGCTCTGGGACTTCAACAGGGGGAACTGGGGTTCCTGGGCGATCTGTGTCCATAGCCTCACAAGTTGGTGCTGGTTCTGGGGAAGAAGGTTTGGCCGTGCTCGGTTCTGTGCTCGTTTTCCCTTCAAACGGGCTTGGCTATTGTGAAAGAAAAAGAAGTTAATGAGTTGACACGAAAGCCAAGGTTAAGGTAAGGCAGTTAGTCCAGCATCCTAGACAGGCTCCCCTGCGGATTC--AGATGAAGGAAGACTTTGCGTCTCCCACTGCCAGCC--CCCCAACCCTCACCCCAGTC----CACATCCTGTGGTCCT-CCCAACCATTCCTGG-------GCCCTTCCTTTCACTTTA-----GATATCCTGTCATTGACATCTACGGCACAGGGCTCATACCTTGGCAGCTGTGGGTGACAACACCTTCTTCTTCTTCTTAATTTTGATGCCTGGAACAGGGGCTGAATTGAGTGCATCCAGGAAGCCCAGGCCCTCCATAGCTACAAGAGGATAAAGCATAAAATGGAACCATCAGACCTCTTTCACAATCCTATTCCTACAA----AGTTTGAGCAGGAAATGGGCCAATGGAGACCCTACCCCAACTTAGGACACAGTTAAGTTCAAGGTGGCCAGGATGCATATGC---TGGATTCATACAAGa a score=5954 s hg19.chr6_ssto_hap7 1905359 263 + 4928567 GCTTTGGATGTGAATTATAGCTCAGGTAGCTGACGAAGTGAGCCCTTGTGAACATGACAGATCACCTT---ACCAGGTG--CCCCTGACCAGTCACAGAATGGCACACGTCCCTATCTTATCTCTAAAATTACTCCTAAGTGACCCC-TGAAACGGGAGTTCCAGAGGTACAAAAAGTAAGGGATACCAAGAAATCAAAGGAAAATGGAGGGAAATAATAAAAGAGAAGGGAAAAAACTTCTCGT-------TCCCAGGGACATTCATTCCCATAA s canFam2.chr12 3423631 235 + 75515492 GCTTTCAGTATTAATTAGAGCTCAGGTGACTTAGGAAAACAACCCTCATGGACAGGACCGACTATCCCGAGACTGGGAGCACCCCGAACCAGTCACCGAATAGCAC----CCCATTCCCATACCCAAGATTACTTCTAAGTAATCCTATGAAAGAGGAGCTCCAGAGGTGCAAAAATTAAGACAAGCACACAAAACTAAG--------------------------------AAATCCATCTTGTACCACCCCCCCA-----ACTCATTTCCATGG a score=67364 s hg19.chr6_ssto_hap7 1905934 1141 + 4928567 GTTTGCTCCTAATTCAAAGTACATCTTCCCCACTTTAGACTCACGCTGTGGCGGGATGATCTTCACTTTGATCTCTTTGGTGGCATTAGGTGTTGTGTTGAGTGGCTTGTATTTCTTCTCTGCAGGGGGAGTGGCATCTCCTGGAGCAGCTACGTTGCTGTCAGAAGAGGAACTGTCATCAACATCTCCG----------ACTCACCCCCTCCTGCTCCCTTGTGTCCACAGATCCACCCCATTCAGAGCCTGAGA-ATATGGTCCATACCTCTGACGTTTGAGGGGGATGGGTTTAAGGTTGTACTTGTCAGAAACCACCACTGTGCTGGCATTCTTCTTCACAGGCACCAAGGATGGTGTCTCCAGCTCTAGTCCTGGGGAAAGAAGCACGGTGTGGGCAGCTGAACTCAAACCCCAGACCCCCGAATTTTCCTCCCGTTCTCACCCGCAAATGTTCTTCTAGCCTTGTAACCAAAGCTTCCTCTGCTAGTCTTCCCTCTTCCTTACGATTAACATACCACACATCAAATGATTCCCCCATAAGGCTCTGGGTGTGCACATGCCCATGAACCCTCCAGAGGCCAGCCGCCAGTCTTACCAGTGGAACGGAACTTGGCATGACTGGGTGCTGTGGTGCGAAGAGACTTGGGCTTCTCCCTCTTCTTCTCTGGGGCCTCCTCAGCCCGGGTCTCAGCCTTCACCTCTGTCAAAGGTCGCTCAGGAAGGGTAGTTCGACTTTTTCCTTCATCTTTACGTTTCTTCTTATCTTTCTCTGTTGTGAAAAAACAAAGCAGAAAAGGATTTTATTT--AGATGAACACTGTC-AGAGGTGAAGCAGACTGGGAGCACCTAAAGGCCACATCCCAATAGGAAAGAAATAAATACAAAGGATAAAGGACTAAGGAGCTTACCAGCAGGCTGGGTACTGCTCTGAGAGCGGATGACAGCCATCCAGTCGCTGACAAGGACTGAGGCCAATTTCCGGAGCTCTGCAGGTGACAG--AAAGGGGAAATGCCTAAATAATGTAAAGTAACATTCTTCCAGGAACAGAAAATG-GGAGGTTTGAGAAAATATTGTGAAAATTTATGTAACGGAGAAAGTAACCCAAAGTTTTAAGAAGAACATGAGATATGCTTAAAAACCAAACCCTTA s canFam2.chr12 3423867 1125 + 75515492 GTTCTCTCCCAATTCAAAGTGTGT-TCCTCTACTTCAGACTCACGCTGTGGTGGGATGATCTTCACTTTGATCTCTTTGGTGGCATTTGGTGTGGTGTTCAGTGGCTTGTATTTCTTCTCTGCAGGGGGAGCACCATCTCCTGGAGCAACTGTGGTGCTGTTGGAAGATGAGCCATCAACATGATCTCTGATGCACCCTAACTTGCCCCCTCTTCCTCCCTCATGTCTACAGACATAACCCACACAGAACCCAGTACACAAGGGCCATACCTCTGACGCTTGAGGGGGATGGGTTTAAGATTGTACTTGTCAGAAACCACCACTGCACTGGCGTTCTTTTTCACAGGCACCAAAGATGGGGTCTCCAGCTCTAGCCCTGAGGGAAGAAACATGCCATTG--CGTTGAACTTATTACC----ACTCTAACTCTTCCTCCCCACTCCAACACTAAATCTTTACCCAGCCC--------AAACCTCACCTACTAGTCTTCCATCTTCTCTCT--TCCCCATGTCATAAATCCACT-ATTCCACCACAAGGCCCTAGGTGTACATCTGCCCACAGACTCTCCCAAGACCAGCCAACCACCCTACCAGTGGAACGAAACTTGGCGTGACTGGGTGCTGTGGTTCGGAGAGACTTGGGCTTCTCTTTCTTCTTCTCTGGGGCCTCCTCAGCCCGGGTCTCAGCCTTCACCTCAGTCAAGGGTCGCTCGGGAGGGGTGGTTCGACTCTTCCCCTCTTCTTTACGTTTTTTCTTATCTTTCTCTGTTGTGAAAAAACAAAGCAGAAAAGGATTTTATTTAAAGAGAAAGACTGTCAAGAGGTGAAGCAGGCTAAAGCCACCGAAGG--------CCAGTGGGAAAGAAATAAATACAAGGGATAAAAGACTAAGGAGCTTACCAGCAGGCTGGGTACTGCTCTGGGAGCGGATGACAGCCATCCAGTCACTGACAAGGACTGAAGCCAATTTCCGGAGCTCTGCAGGTGAGAGTATAAGGGAAAATCCCTAAGTAACTAAAAATATTATTCTTCCAATAATAGAAAATACAGAGGTTTAAAGATATACTGTGAAAATCTATGTAACAGAAAACGTAGCCCAGAGTTTTAAGGAGAAGATGAGACAGGCT-------CAAACTCTTg a score=7171 s hg19.chr6_ssto_hap7 1907400 150 + 4928567 TTATAGATGTGAAAA------------------------------------CAAGAATAAAATTTGTTTCTAAATATATGAAAAAATA--------CTTTGTAACTCTTTCCTTTTGTACTTGGCAAATAACATCTCTGATCTATGGCACCTCTCTTCTGGCCAACATTTCCACTTATAAACTCATTTCATAAT s canFam2.chr12 3426019 194 + 75515492 TTAGAGATGGGGAAGGCAGTGTTTAGAGAAAAAAAGACGGTCAGAGAATTTAAAGGACAAAATGTGTTTCCAAATATACGGAAAAAAAACAAAGACCTTTACAGCTCTTGCTTTTCGTACTTGGCAAATCACATCTCTTATCTATGGCACCTATCCTCTTGCCAGCTTTTCCACTTACAGATTCGTTTAATAAT a score=15652 s hg19.chr6_ssto_hap7 1907577 442 + 4928567 GATGAGACACGCTAGGATGATACTATTTCCCACAGCAAATTTTAAGTGTATGTGTTTTATAAC-AAGCAATTTTAGGAATCAGCTTCCAGTTAAA-GTATG-----GCACCTTATATTCAGCAACAGAGAAATGAACAACTTTGGAATTGAGAACAGGAAAGAGGGTACAGGTTAGAGGAACTTTCTCTTTAAAAGAAGGAAAAAAAGCAAGGTGAGGTAGAAAGAGAAAAGTGAAGGGACAATCCAAGGATGGGAA-AAGATATTAAGGTAATTAAGTGGAAGTAATAGAGAAAAGCCCATGAGAGAGCAGGAGTGGCACCCTACCTTCATCCTCACTTGACTTGCTCAGCTGCTTCACCAGTTTAGCTGTGTTGTTCTATGAGAGATGGGAGCAGCAGAAAGGT-AAATGCCAGGAGGCAAATAATTCCACTTAGAGCTAAAAACGACA s canFam2.chr12 3427184 391 + 75515492 GATGACACTCTCTAGGATGACACTATTTTTTCCAAAGAATTTCAAGTGCATAGCTTTCACAACCAAGAGATATCAAGAACCAGCTTCTTGTTAAAAGTATGCTGTCTTGTCTTACATTCAATGGTAGAGAAATGGACAAATCC------------------------------CATTTGAAATTTTTTTTTCAAGAAAG--AGAAAAGTAAGGTGATGTAGAAAGG----AGTGACAGGACAGTTCAAGGATGGGAGTGAGACATGAAGGTAACGAAGTG-AAGTGATGAGGAA-----------------GGACTGGC-CCCTACCTTCATCCTCACTTGACTTGCTCAGCTGCTTCACCAGTTTGGCTGTGTTGTTCTACAAGAAACGGGG-----AGAAAGGTTAAGTACCAGGAGGAAAAGGAGTCCTCTCGGAGCTTACAACTGCA a score=104946 s hg19.chr6_ssto_hap7 1908656 2422 + 4928567 GCCACACACCTATTAAAGGAGATAAATTCAAACCAAGTCTTCTTCTTCTAAATTCCTATTTTTTTTCTGCTGTTCTACCTCACAGGCCCAAGATTACAGCCACATCAGTCAGTTTGAGTTTTTCATCCATTAGACTAAACCAAAAAAGGAAGAATCAGGGTT-TAAAGACTAAAGGTACCTGCTTGAGATGGTCTACAGTGAGCGGTAGATGCTGCAGGGTCAGTAGAATTTGCTGGAGGAGGGGAATGTTGTTGGTTGTCTTTGAATACGTCAGCCAATTGTTAAGAAGTTTGTAGCCGCCAACGTCAATAAATCTGCAGGCAGGCAGGAGAGTCTATCAGTAATGCCCTTTCTAGGTTTTGACAGTACCACATCCTACAATCCCAGTCTCCCATCAATGACCCAGGAACCCCATGCCTCACCGCCCC-ATCTTTTCGCTACACCTTCCCATTCCAACCATCCAGATCC---CCACTTACTTGACCAATATTTCTGGTGAACGGGTCTGCAGGAGAATGTTCAAGTAAGTGCATCGACTCACCATCTTTCGTGCTTCCTTCATCAAACTGCAGAAGATGAGTTAGGGTTAGAAATGAAGCAGCCAGTATCTCTTCTCTTAGCAAAAGCGCCTCT---CTGTGA-ACTGCCTAGAGATTCCTAATGACTTGGGACTTTGCTCCAGAGAAGGGGAGTCACATATACCTCTAGGAAGATGGGATGGATCCAGTGTGACATGGAAACTTATGGGAGAACAGA-------------GACACCGCAGTCTCTGACCTGGGGAGGAGAGCATCGCTGCCTCCGTAACACACAGGATGAATTCCATTCTGCCTCCAGGTGA-TAAGGCTATCCCTCAACAACTGTCCCTAATAGTCTGTTCAAGACTGGCTTAGTTATTTACTCTCCCCTGAAAAACCTGAGAATCCCTGAAGGAAAATAACATTATGGGTAGGTGGAACACGAACCAAAACA--ATCTAGAATTCTGTTACCAGGCTACCCTGCTCTCATTC---CAAAGCATGACTCCCTTGGGACCGTGGACGTCCAAATCTCCAGTTTCCATTATGGTCAGAAAC-AAGTGATCATCTTTTCCTATCCCTTATCCTAAAATTGTTACATTTTAATCCTATTGCACTGACTATCTTTCCCTTTCCTTTCCAGGA----TCATTCCAGTG-TGCCTCAACTGCAGCCATGTTTTAACACACAATATTCTCTACTCACAGTGAATACAAAAAGGGGTAAAGACTCACCTGAAGATCTTGGAAATCCCATCCACACTTTTGACTTCCCCATCTCGGTTAAGGAAGCTGTCCAGGCCCTTGAGAAGTTCTTTGGGGTCTATGGGACCCGAACCCATGATGGTGGTTTCTATGGTAAGAGGACAAAACAAACAAACCCACAGAATAAATGGGTGGCAAGGACTACCCGAGTAGGCCCTCTAATAAACCACATCTCTATATTTGACAAAGTATAATGACTAATTATTCAA-----------CTATGCT----ATTTTTTAGATATGAAAAA--TCGACACAGACCACTTGCCACTACTGAGAAAATAGCCCTGGCAAGTTAAGCATGGGGAGCATATGTGACTGAACAGGAAAGC---AATTCGATTGGAGGAGTAGGGCAGCAC--ACCTGTCCCTCCCTCCCAGCAGCATCCTTCCTAGGATGGCTGAACTTCACTAGATCGTATTAAAGCTAAGATC--AGTTCCCATAACAAGATGTTCAACTCTCCAGGGCATTTACACCTATCGTTAAGTCCTGTCTTCCCT-AGTTGCTGATAAATTTGGCTTGAAAAACAGCCTATAGCTTGATAGAAATTGGGCCAATCTTGGGTGTTTGAGCTAAATGTCTTATAAGACTTG---AGTCCTTTTTATCTTAGCCCATTAAGAGTCATAATCACTACACATGGCAAGATATGT---------ATCAGCTGAAGTGGTAGATGATGGAGAACAAAACAAAACTTGAAAACAGAATCCCTCTCTAAGGAGATCTGGGAGTAGGTGCC-AGAGATTGAGACAAATGGATGCATGGAAATCAAGCAGGTCCT------CCTAGACCTTGAA-TAGACTGTCACTCATTAGCCAAACACTACACAAGTTTTTACTGTCTCTAAGTTAAAAGGAAGCTAGTGGTTTGTGCTTTCAAAAGCAAAGATGCGAATCTGGTC----CTCTCCTCAAAAATCACGC---TGTACAAGATCCCCTA--GGAAAGCCTAAAACTGAAAACCATGGAACCTAAAAAGGGAACAGATAAAG-CCAAATGCTAGAAAA----ATTCCCTTTTAAGCAGCTGTTTTAGACCAGGTTGGGAAGGGAATTAGTTAAAAGCTAAGCTCCTTTTATGG----AAGGGACAAGCCAGAACTGAAGTTCCAGA---AAGGTAATTTAGGATCAATATGGTTCTGATTGGGATTTTTATCTACACTGCCTCTAAATACTTGCTTCTAAGACCCAAAA s canFam2.chr12 3427858 2370 + 75515492 ACCATACATCTGTTAAAGGG------CTTAAACCAAGCCTTCTGATAGTATACTCCTATTTTTTTCC-ATCACTCTTCTGCACAGGTCCAAGACTGCAACCACATCAG--AGTTGGTGTATTTTATCTGTCAGGCTAAAGCAAAAAGG--AGCACTAGTGTTGTACAGACTTAAGGTACCTGCTTGAGATGGTCCACGGTGAGCGGGAGGTGCTGCAGGGTAAGCAGAATTTGCTGCAAGAGGGGAATGTTGTTGGTTGTCTTTGAATAAGTCAGCCAGTTGTTAAGAAGCTTGTAGCCACCAACATCAATAAACCTGCAGGCAAGTAGTAGAATTT----GTAATGCCCTTCCTGGGTTTTGG-AGTGCCACATCCCACACTCCTACTCCCCTGTCAATGACCTAGGAACCCCATGCCTCACCTCCCCTGCCTTCTAACTACATCTTCCCATCCCAGCCTCCCAGATCCTCCCCACTTACTTGACCAATATTTCTGGTGACTGGGTCTGCAGGAGAATGTTCAAGTAAGTGCATCGACTCACCATCTTTCGTGCTTCCTTCATCAGGCTGTAGGAGGGAAATTAAGCTTAGAAATGGAGCA---AGAGCCTCTTCTTTCAGCAGAAGCATCTCTGATCTGTGGGAGTGCCTAAAAATCCCTGATGACTTGGGACTCTGC--CAGAGTGGGAAGGTCACACAAGCCTCTCGGGGGATGGGATGGATCCAGAGTCCAATGGAATCCCATGAGAGGATGGAAGACAACTGAGGAGACACTGAAGCCTCTG-----GGGAGGTGAACATCACTGCTTCTCTAACCCACAGGACACACTTGATTCTGCTTCCCGGTGAAGAATACTAGCACT-AACAGCTGTTC---ATAGTCTGTTCAGGACTGGCTTAGTCTCTTGCCTTCCCCTGGGAGACTGGCAGAGCCCTGAAGGAAA-CAACAGTTTGGG-ATGTGGAATGTGACCCAAAACAGAACCAAGAA--CTGTCACCTGGCTTCCCTGTTCCCTTCCTCTCAAAGTATGACTCCC------------------AAACC--CAGACTCTATTATGGCTAGGAACCAAGGGATCACTTCTTCCTATCATTTACTCTAAAATTACTGGATTCCAATCTTATTCTA------GAATCTCCCTCTTCCCTCTGAGAACACTCATTCCTGTTCTGCCTTA--TGTAG------TACAACTTACAATATACTCTAACCACAATGAATCCAGAGATAGGCA--GACTCACCTGAAGATTTTGGAAATCCCATCCACACTCTTGACTTCCCCATCTCGGTTAAGGAAGCTATCCAGGCCCTTGAGAAGCTCTTTGGGATCTATGGGACCCGAACCCATGATTGAAGTTTCTAAGACAAG--GACAAAATAAAC----CCACAGAATAAATGGCCGGCAAGGACAATCCCACTATACCCTCTAATAAATTCCACTTCTACAGCAGATGAAATTTTGTGACTAATTATTCAATCTATATTCAACTACACTCATCATTTTCTAGGTAAGAAAAAAATCAACACAGACCAT----CACCAC-----------CCCTGGCAAGTTAAGCATGGTGTTAATACAGGACTGAATGGGAAGACTAAAATTAGACTGGAGAACT-GGGCAGCACGTATTTCTCTCTCCCTCCCAGTTACATCCTTTCTAG-ATAGCTGAACTTCACTAAATCGTATGAGAGCTAAGAGTCAAGTTCCTATACTAAAAC--TCAACAATCCCAGGCTTTTTTGCTCCTTGTTAGGTCCTATTTCCCCTTAGCTGCTGATAAATTTGGCTTGAAAAA-AATGGATAGCTTAATAAGAACTGGGCCAATCCTGGACACTTGGGCTATATGCCTTCTAAGATTAGTCAGTTCCTTTTTATCTCACTCTATTAAGAATCATCATCACCTCAAGCGCCAGAACACGCTCTGAGACAATCAGCTAAACTAGCAGGTGAT----------ACAAAACCAGAAAACATCCTATTTCCCTCAAGAGAGTTGTGGGTACCTTCCTAGAAATGGAGACAAATGGATTTA--------AAGGAAATCCTTTATATCCTAAGTCTTGAAATGAACTGCCACTCGTTAACCAGATACGACACACATTTTTATGGTTTCAAAGTTAAGAGGAAGGC--TGGTTTGTGATTTCAAAAGCAAAGATGAGAATCTGATCACTACTCCTCTTCAAAACCACACCACTTTCCAAGATCCCCAAAAGAAAGGCTTGATATTAGAAACCATGAAGCCAAAAA---GAATAGAAAAAAACTAGAAGCTGAAAAATGCTATTAAATTTTAAGTAGCTACTTTAAACCAGGTTAGAAAAGGAGCTCATTAAAAGCTAAACTGCTGTTATGGGATAAAGTGTGAAGC---AATTCTAGTCCAAAACCCAAGCTAATTTAGAATCAATGTGGCTCTGAGTGGGATT------------------------------CTGAGAACTGAAA a score=352345 s hg19.chr6_ssto_hap7 1911409 6863 + 4928567 GCAATATCTGCCTTTGGGCAATAAGGCCCACACTGAGTAGCAAGGAAGAGGCAAGAACAAAACCTTCCTCATCCTACATCT----AGCACAGAAGTAACAGACACAATCCCAGCAGAAGGGTAGAAAAATCAGTATTTTACAAAGATGAGTAGTTTTGTGCCGGAAAAAACAC-AGGTTTCTTGTAAGATAATGCAAATTAGTTCTACTTGTTCTCAAACAAAAGAAAAAACATAGCA-----------------TAACAATCTCAGCCTTTTTGTCCTCCCAACAAAAACGTCAGTAAGTTTCCAAATGTGTAGGTCCTAACAACCTAGGCGAGCAGCAGCAGAAGCAGGGAGGAGGCAGCCAGGAAGGGTAGGAGTATAATCTTGGCTCTGGAGATCATAACCTGTGGGCTGAACAGAGGGAGAGATGAGGCAAGAAATGTTGAG--------AAGTC-----------------GCTGCTGCCCTGGAACCTCCACAAATACAAGTGGAACCTGAGGTCAGAGAAA-AAACATTCAAGGAGAATACTGGAAAAGATTAGATGTCCGTGGGCCAAATCCACTCAAGTGTGGTGATTCCTACACACACAGAGACAGACACAGAAATAAAGGTATTCTT-CCCATGTAGTGAGATACTATAAAGTGATCTATAGAAACTATA--AAGAGATACG--------ATAAAGGGACACATAAAACAGATATCACATCTGTTGGAGACTGGAAAAGCAATGTATGGGTTCCAATAACAACATATCATAAGCAATCAAGAGACTAAGAAATTTTTAAAACTCCCTCTCTCTATATATACACACATACCTACCATTAGATTCCTAAAGCAAAATATATGCAATTTGACAAAAGGCCTTGAATTAAACATCATTTCAAACCAGT-----------------------TACCCTTGAC-----TGATTCAAACCCAGAGTTGAATATATATAACCCTGGAGAATTCCTTTTTGCATATCCAACTACAAGCTAAGCCAATAAATAGACCTACTACCCCTATTTCCTTCAGACACT---------------AAATAAACTGTCATCTGAGCTCAAGTGTTCCTT-----AAGAGGATGGGAGACAAGAAAGAAGAGCCAGTCTTAGAAAAATGGACCAATGAGTACAAAGCTAAATTCTGTCCAGTGCCCTCTGCTGGAAATGGGATCCAGGGAC---TTTTTTATTCCCACATGTATAAACAAGAATAAAAGACATTAATAGTCAAAGGGAAGCTAAGAGACAAAGCAAAATTAGCGTTAAATATTCATTTTCCACTACT-----------TATATTTTGGAAATATAA--------GTGAAATTTTGTCTCATGAGCACCAATCTTGATAAAATGTAAGTGGGTTTTCTCATGATGGCCTTCCTTCAGGAAGATTAGTTCT----TATTTAAAATTAAGGACCCCAAGTGTCTTATAACCTAGTTTCCTTGCTTTGAAGTCAGTATATTTTGGAAAAAAACCAAACAATTTCCAAGGCGCTCAAGTGGAAAGGAATGTAAAGTCCAACATTTCGGGCACAGGGCTAC----AGCAGAGAAGGCAAACTGAGTTGATGAAGGCAGGCAGGGGCTGTGACT-AAGTGTTGTAACATTACCTACTCAAGATCTGGAGTCTAGAATGAAAGCTTAAGAAAGCTTTCTGGAACCACAAGTAATCCACGGCATGATTATGTCTTCTTTTAATGAGCTGCTATTTTCTTGACTGCAGAACATACAGAAGGTGGGGAGTGAGGTAGCAACCCCCTGGCCTACCTCCACCTCATCCTAAGCTATGCGTTCCTT---ATGGAGAATGTTTCAGG-------------------------------------CAGAGCCATA--CTCTACTGGCACAAGGCATTGGGGAATTTTCTACCATTTTTACCAGAGATAAACGTCT--GTGACACCAACTCCTGCCTTCAAAATGAATTTTACTTGAGGGTTATTCAATTAAATAGGGTGAAAAAATATCCAGCATAGCTAAAGTTATTCCACACCCATCACCAATGAAACAGGACTGAATTGGTTCAGGATAAAAATTCTGTG-CAAGTCAGAGCTCTTTAAAAAATAACTGT-CTTCTAACAAAAGGAGAAAAAAGTCCCAAATTTACCTTAATTTAGA----GGCACTTCTGGAAATGAAAATGATTTGTACCTAACCCCTTATGTTCCCCTTCCTTTCTTCAGTGTTTTAGGCACTTCCTAGTTTGACACAATAGTGGACTGAATTATGTCTCTCAGGTGATTCATCACAAGGTCATAGCTTTCTTCCAAGTAGTAAGCCCCTACCCCTCAG--TCATTTTGCAAACCTGATACATGAGCTCCTCAAAAGCTTATCTGCCTTCCAATAAAGATGCAAAATGATATACCACCCTGACTCATAGAAAAAGACCCCAGACTAGAACTCTGGCCACAAACTACAAGGATCAGGTTTTCCAAGATTTTCTGAATGGATGTGGTTCCCCTAGTAGACCTGGCTTCCC-ATCTCCCATGTTAAGGAAGATCTTCTTTATTAATCCCCTGGCTCACTAGAGATCAGGAACCCCAGTGGGTAGAATGTTCAGCTCCCAAGGAAGATATGCTGCAGAGGCACATGGCAAACTGCTTAAAAGAAAAAAACAAAACAAAACAAAAAAAGCTTGTAGTCAACAGACATGTGAA-GAGTCCCTCCCATCCAATCCAGAAGCTTAAGTAATAATTTGAGAATCTGTACCCAGTAGGAAGTTAGCCCTAA-GTCTCACCCAGGTCACCAGAGGGCAGTTATAC--------TTTCCAATTCTGCCTAGAACCTCCACGCTTCAGTGCAGGACttttaaaaattaaaattatatGGAGAGTCTGATAAAGATTTGACTTTGAAAAATTTGGGGGAAGA-----AAGGAACCAGACACCCAATACCACCCTCAGATAGGGCATGGCTTCTGAACATGCACCAAATGCCACAGCACTGCATGAGTTGAAAAATGAAGAGGACATCATTTTTTCATTAATGCTTTTA-GGAATTTCTTTTAGAAGGGAAGGAAAAAGAAATTCAAAAAAGGTGGCTCTTTGGGGAAAAAAAAAAAATGAAAGTTGTGAAATGTAATACCAGAAAGGTTTTGCTTACCAGAAACCGTAGCTTGATTCCCCCTGCCTTGAGTTTACAACTGCCGCCTCCTTTCCTAAAGATTCACTTCTTA-TCCTAGTACCAATGTACAGGAACTAATCAAGTGCAGAACGTGATACAGCACTGAATACAG----TTTATCCCCAAACTGAGAGGTGGGAATGAGGGCGATTTAGAAGAAAGTCCTAAAAGTACCCACCTTCCCCCGATTCTCATTACACAAAGCGACCAAATGCAGGAGGCCCA----CTGGTTCCTAAGCAGAAATGGCACACTTCAGTGTCATTAGGCCC-GTTTATCTCCAAGTTACTCTTGCAAGCCCTTGTGTCTTTCCCATCTCCCTCTacaca-catatatacatacacacacgctcacacacaTCCTC-------AAAGCTTCCCAGTCTTA---------GGTTTGCCTGTTTTTTCACCCCTGGCAGCTGAAGTGGGGAAAAATTACAAGCAGTTGTGATGAGTGAAGGAAAGTGAAAATAAAA---ACTGGTTC----TATAAAA--ACTAGAACTACACAGAGATGGACAGCCTTGATACTTAATTCCTATAAGCTCCTATCCCTTTAAGATATTTTATATAATGAAAATAAGGAAAATGTCTTCTCC---CTAGCAGCAACGAGCACAGGCAGTGCAAAAGCATCTGCTCAGGGGTGGAGCTTCAAGAGGGTGGAGAGAGGAGGAAGAAAGCTGATTACATCACCTTTCAAGGCTGCTCCTCCCACTTGACCAAGTTTCTAGGGCGGCCCTAAGCTCAGGATGGCAAAAGGGGGAGAAAAA-CAACAAAGACGGAGGGACG---CCATTTTGTAATGGAGAAAGAGGACTTAAACTAAAAAGCCA-CCCGGCTCTGCCGGTAGCTTCAGTTACATTATAAAA---CACCTTTTTAGTaaaaaaaaaaaaaaaaaaaaTCAAAAACCAGTTCCCCATCGTGAATAATCTTTGACCTATTTTGATCAGTAAGAGCGTAGTGAAAATTAAAGCAATTAAAATATTAAAAAGAACAATTTTCTGCAGGGAAGAACTGAATTTGCAACGGAGGTTCAACCGGCTACCATCGACCACCCCCATCCTCCCTATAGAGGGAAAGGGGGAGGAAGGACTTGGACCCCTCTCAACAAATAGGGTTGAGGTGGGAGGACAGGAAAAAAAATGGGTCAAGACACAACCTGCAACGCCGCTTGGAAGACAAAAGGACAAGGAAAGTCGCCATATTGAAGCAGGGAAGAAAAAAATTCCTTTTAACGACACAAATCTTTTAGAAA-GCTAGCATTCAATTGCACTAAATGGCTTTTAAAATTATACTCCTAAATTCCACATTTCCCAACCTTTCCACCCTCTATTTAACTGTACCTCCCCCACCAAAAAATATCAAGTTAAAATGTTAATCACTCTTTTGCTTTTAAAT-ACCTATGCAATCTGCAACAATTATAAGACATTCTTTACCTCCCCAACTATTATCTTGTATGTACTGGCACTAAGATTATATTTTGTCCTAAGT-----GTCTTGCAATCTTTATTCCTAGATTGCCACCTATTTTAACCACACAAATATACCCCAAGCAAATTACATTAAAATTGAGAGGATTTAACAGTCATTTAAAAAGTTATAGCGAGCTATTACTTCTCTCTGCCCATCTCCTTACCCTGCAATCTTTATGTACAGATTGCTTATTAATCTGGCAAATTGAAAGGCACCCTGCTTGTCTCACACACAAAGAAGTGGTACTTCTGGGCCACAAGATCCACCATCTCTTGTATGTGAGCTCATTAACCCTTTTGAAGACTGCTGCTAACCAGAGGAAGGTAACCATTCCTCCTTATA-----TAAACACATATGGCTTTGGCAGTCTGGAAATTGGCTGGATTACCAAGGGTTAACCATCAAAATCCTCACTTGCTGGCCCTCCCTCCACCCTCTCTTTGCCTGCAGCAAGGCAGGGAAGAGATAGGTGGTAGGGGAGAGAGAACAAGACTGTTTAGACCCACAGGCCCTTTTTAATGGAGATTAAGTGACCAGATTGGTCCTTCTCCAGTTCTCTATTT-GTTCTATGGTCTCATTTCTTCCTCTCATTATTTTTGGTTTCACAACGGGAAACGTTGATTTCTTGTTGCAAGGCTGGTTTTTGAAAATTCGACACTTACTATCCAATTTTTTTGCGACGTCAGCACCTCGGGCTCAGGGGGGAGGGGG--TAAAATTTTGGAGGAAAAAAAATAAAACAACCAACCAGGACCCAAAACTCAATTATTTAGGGGGCCTCATTGGATCAAAAAGTCTTTTAAAAAAT-AAAGGCCAACTCAGTATTCATTTCCCCCCCACCCAACTCCATTTAGGGAGGGGGG-TCGCAGAAAAAA--GTTCTGAGTGGATTCAAAAAAGTAAACGCTGGATGAGTGAATTTGGGTGG-TTTGGGAAGGGAGGGTGGTTGATTATTTTTGAAGTTATGTAGTGACGGTCCTTCGGCCACAGATTTCAAGTCCCAAGCAGCGTGGGCTGGTGGGGTGGGCAAGATAGGTGGGAAGGGGCAGAAGACACAAGTGGTTGGGCTGGTGGCTGCTGTTTTCCCTTTCCCCCCTCTCTCAGGATCCTTTCAAGGGCTTAGATGTTGCTGCGGCTTGTTTCTGTTTTCCTCGTGGCCGGCCTGTCTTTCTCCGAGAAAATTCAAACCTGGGATAAAAGGAACACAAGGGAGAAAGATGTAATCAGTACGGGTTGCTTCAAAACACTCACAAATGCCATCTTTGTTGTCCCCAAACAAACCTGTGTCCCATCCTGATCGCAACCGCTTT----AAGCCGTGGCTCTCAAATGAACCCATCCATCCCTATCCCGCTTCCCAGATCCAACGCTCTCCGCAAAATTTTACCCACTAGACGACAAAGTAGGCAAACTTACCTCTAAACGAACCCCAGAATGGCGGCCGCCCGCTCGGGTGGAGTCTTTTATACCCGGACGCCGCCCAACGCGCCCAAACGTGCTAGTGAAACGCCCTTGTCGCGAGACATTATACGCGAGGCGTGAACTCATTGGTCAACCCAAATGACAACTCGCCAACTGATTGGCTACTCTCACTTCACCTTTGCTCCGCCCCTTTCCCT--GGCACTCTCTTCCGCCTCCTTCCTG-CCTCCCTGTCGCGTGCGCGTGACCAGG-AGCCTAGCACCTCCCTTTCCTCTGCTTCCGCCACTTCCGCCCTGGAGAACATTTCTCACCCAGGATTGGTAGAAACCTAAGAGCGCATGCGCACTGAGAGGATACCGCTAAAAATCGCCTTCAAAATTGCTTAAAAGGCAAACTTTAACAATGCGATCTAAGAGTCGTAGTGACTGGCCAAAAAAAACCGCAATTTTGGGGTCTAATTCGATTGTGACGCAGTTGAAATTAGCTTCTCCCCCATGCCTTCCCTTTCACGCTTCCGTCCTGACGCAAACGTGGGGCCGCCTTCCGCACTGCGGGCTTGTCCTTGGCCCTGCCCTACTCAGTTTCCTGAAGCATGCGCAGTTGCCTTTCCGTCAATTCCTGTCCTGGGCGTACGTCAAGATGGCGGCGTCTGTATTAAACACCGTGCTGAGGCGGCTTCCTATGCTATCTCTCTTCCGAGGTTCTCACAGAGTTCAGGTAACTCTTCGAAAGACATTTTGCACAACCTCAAGTTGGTTATACCTTCTCGAGGTTGTCGCTCCACTGTCAGGAATCCACGAGTGGAGACCTTCCCACGTG------TGTCTTAGCTGTCTAGGCAGTACT--TCCTGCAACCCCCCCCCCACACCCCGCGC-------------ATTTTCTAATCCCGAGCCGAGGACTAAACGCCAGGGTTAGGTATCATCCTTTTTCCAAAATGCCATTTCAGTAAAATAACTTAAGTGATGGAATTGACCCCTGTCCACCCTCAGTCAT s canFam2.chr12 3430228 6692 + 75515492 GTAATACTTATGTCTGGGATGTAAGACTAACACTGGGTAGAAAGGA---GACAAGAAGAAAACAATTTCTTGCCTCCAGCTTAATAGTACAGA--TAACAGACATGATCCCAG---AAGGGTGGGAAAATCTGTGTTTTACAAAGATAACTCTATTTGTGCAGGAAAAAAGACCAAGTTTCTTATAAAATAACAGAGAT--GTTCTATTTGTTCTCAAATTAaaaacaaaacaaaacaaaacaaaaACCCAAGCCTAATAATCTCAAC-TTTTAGTCCTCCCAACAACAAGGCCAATGAATTTCTAAATAGAGAAGTCCTAACAACCTAGGA----AGCAGCAGGAGCAGGAAGGGG---------------------------CTGGTTCTTGAGATCATAACCTGCAGGATGAATACAGAGTGAG--GAGGTAAGAAATGCTGAGTGCTGAGCAAATCTGGGTTAACTGTGCATTGCTGCTGTCCTGGAATTTCCACAAGGGCAGGTAGAACCTGAGGTCAGAGAGAGAAACACTGAAGTAGAATACT---ATAGATTAGAAGCCCCCGGGCCAAATCCACAGAAGTGTGCAGATTCTTACA--------GACAGGGAAGGAGAAAAAAGCATTTTTTCCCATGTGGTAAGACAACATAGAGCGAC--ACAGACACCATACCAAGAGATACACAGATACAACAAAGGGA----TAAAACAGGCTTCCCATCTAGGGGCGACTGGAAAAACAAGGAGTCAATCCAAAGCAGTACATATCATCATCAGC---------------------------------------------------------------------AACCACAATGTATACAATTTGACAAAAAGACTTAAATTAA-CAACACTTCAAACCAGTACCGCCACTCCCACCCGGCCAAATACTGCTGACCACACTGATTCAAACCCAGAGT-GAAGATACACCACCTTCGAGAA---CATTTTGCATAACCAAG---GAGCTAAGCCAATA----GGACTGCTACCTCTCCTTCCTTCAGAAACTTTaaaaaaaaaaaaaaaaaaaaGGGTCACTTGAGCCGAAATGTTCCTTCACTTAAGAAGGTAGCAGAGAAGAATTAA---CCATCCCCAGA------GACCAATAAGCACAACGCTAAATTCTGTCCAGTGCCTTATGCTAGGAATGGGACCCAGGGACAACTTTTTCATTCCCATTC------------ATAACAGGCAAAAATACTCAG-GGAAAGCTAGAACATAAAACAGAAATC---TTAAATATTCACTTTCCACTATTACTTTTCCTTTTATGTTTTGGAAATATAATCAACAGAATTAAGTTTCATCTCCTAAGTAGCAATTGTGACAAAATGTAAATGGGTTTTCTCACG---GCTTTCCTACAGGCAAATTAGTTTTGAGTCACTTAAAATGAAGGACTCCAAGTGTCTCACAACCAAATTTCCTTA-----AAGTCAGTACATTCTGAGAGAAGG----------TACAAGGCACTCAAGTGGAAAGGAATGAAGAGCCTAAAATC-CTGGCGCAGGCCTACCTACAGTGGAAAAGGCTAA-TGAGTTGTCCAGGGAAGG-AGGGGCAGTAACCCAAGTGTC--AACATTAGTCTT-----ATTTGGAGCCTCAAATGAATGCTTGAGGAAGCTTCCTGGAA--GCAAACAATCTAGGGCATACTTTTGTTTT-------TAAACTCCT-----------TGAAGACAGTACAGAAGGGGCAGGGGGAGGGGAACAATCCCAGCCTTATCTCTACCTAGTCCTAAACTGTGCATTCCTTCTCATCAAGAATTTTCCAGGGGaaaaaaaaaaaaaaaaaaaaaaaaaaagaaTTTTCCAGGGAGATGAGCACTACGAGCACA-GGCACTGGGGAATCTTCAAA---TCTTACCAGAGAGAAACTTAAAAGTGACACCCACTCCAGCCTCTGAATTGAGTTTTACTTGAGGGTTATTCAATTAA---GAGTGAAAAA-TATCTAACTTGGCTA--GTTATT----ACCCATCACCAAGAAAA--GAACTTAATTGGTTTAGGACAAAACCCCTATGGCAAATCACAGCCCTTTTAAAAACAATCACACTTGTAACACAGAAGGGAA-----TCCAAATTTACCTTAACATAAGTCTTAGCACT-CTGGAAATGAAAACGCTTTGTACCTGACCC-TAACATTCCCCTTCCTTTTCTTGGTGTTTGAGATATGTCCTTATACCACT---TGGTGGACTGAATTAGATCTTT-AGGTGATGCA---CAAGGTCTTACCTCTCCT---------AAGTCCCTAATCCTCAAATTCATTTTGAAAACCA-----------------------TATCTGCCTTTTAGTAAGGATGTAAAATCACCCTCTCCCCCTCCCCA--GCAAAAGATCCAAAA-TAGAACTCTAGTCACAAACTATAAAGATCAGGTTCTCCGAGGTTCTCTGGATAGATGTGGTTTCCCTAGAAGACCCTGTTTCCCCATCTCCCATGTTAAGGAAGATCTTCTTTATTAATACCCTG-TTCACTAGAGGTCAGGAACCCCAATGGGTAGACTATTCAGCTCCCAAGGAAGGTATGCTGCAGAGGCACATGGCAAACTGCTTGAAAGATAAAAA------------------ATTTGTGGTCAATAGACATGTGAAAGAGTCCCTCCCACCCAATCCAGAAGTCTAAGTACTAATTTGAGAATCTGTACCCAGCAGAAAATTAGCCCTAAAGTCTCA----GGTCACCATAGGAGAGCTGTACAAAATGGCTTTCTGATTCTGCCTAGAACTTCCATGCTTCAAAGCAGGACTTTAAAAAATGGAAAGGATATGGAAAATCTGACCAAGATTTGACTTTGAAAAAGTTGGAGGAAGATAGAGAAGGGGCAGGACACCCAATATCACCCTGAGA----GCATGGCTT-TAAACATGCACCCATTGCTAAAGCACTGCATGAGTTGAAAAATGAAGA---CGTTATTATTCCACTAACGTTTTAAAGGAATTTCTTTCTAAAGGGAAGGAAAAA--AATTAAAAAAAGGTGGTTCTTTGG----AAAAAAGAAATGAAGGTTGTGAAATGTAATACCAGAAACGTTTTGCTTACCAGACACCGTAGCTCGCATCCCCCTGCCTTGAGTTTACAACTGCCGCCTCCTTTCCTA----TTCATTTCTCAATCCTAGTACCAAAGTACAGGAGCTACACAACTGGAGAACGTGACACAGCACTAAACACAAAGAATTTATCCCCAAATCCAGAAGTGGGAATAAGGGTGATTTAAAAGGAAGTCCTGAA-GTACCCACCCTCCCCCAGT---CTCTATACAAAGCAACCAAAAGCAGG---CCCAAGGACTGGCTCCTGGGCATAAATGGCACATTTCAGTGTCATTAGGCCCCATGTCTATTCAAGTCACTTTCCCAAGTCCTCCTACCCCAGTATTCCCCCACCACACAGCACGCTCGCGTGCGCTCTCCCTCACACACACACCCCCCACCAGAAGGCTCCCAGCCTTAAGTATAGTTGGTTTGACTGCTTTTCCACCCCTGGCAACTGAAGCGGGGAAAACCTCCAAGCAGTTGTGATGAGTGAAGG----TGGAAATAAAAGCAACAGGCTCAGATTGTTAAATTACAAGAGCTGCCCAGGG---GACAACTTCAAGACCTAATTGCTACAAAGCTTTTTCCTTTTAAGATA-----------------AAAGAAAAGGTTTCTTCCTGTCTAGCCGCAGCGTGCAGAGG--------GAGCATCGGCTCAGGGGTGGAGTTTCAAGAGGGTGGAGAG-----GAAGAAAGCTGATTACATCACCTTTCCAAGCTGCTCCTCCCCCTTGACCAAGTTTCTAGGGCGGCCCTAAGCTCTGGATGGCAAAAGGGGGAGAAAAAACAACAAAGCAGCAGGGACGACGCCATTTTGTAATGGAGAAGAGGAA---AACTTAAAAAGCCATCCCGGCTCTGCCGGCAGC--CAGTTACATTAAAAAAACACCCCTTTTCAGTAAAATA--------------CCCCAAGCCAGC-ACCCATCCTGAATGGTCTTTGACCTAATTG-------AAGAGAGTTGTGAAAATAAAACCAATTAAAATATTTAAAAGAACAATTTTCTGCGGGGAAGAACTGAATTTGCAATTGAGGTTCAACCTGCTACCATCGACCACCCCCATCCTCCCTATAAAGGGAAAAGGGGAGGA----CTTGGACCACTCTCAACAAATAGGATTGAGGTGGGAGGACAAGAGAAAAA-TGGGCCAAGACACAACCTGCAACGCCGCTTGGAAGACAAAAGGACAAGGAAAGTCGCCATATTGAAGCAGGGAAGAAAAAAATTCCTTTTAACGACACAAATCTTTTAGAAAAGCTAGCATTCAATTGCACTAAATGGCTTTTAAAGTTATACTCCTGAATTCCACATTTCCCAACCTTCCCACCC----------------------ACCAAAACGTATCAAGTTAAAATGTTAATCATT--TTTGCTCTTAAATTACCTATGCAACCTGCAACAATTACAAAACATTCTTTACCTCCCCA----TTATCTTGTATGTACTGGCACTAAGAT---ATTTTGTATTGAATTTAGGGTCTTGCAATCTTTATTCCTAGATTGCCACCTATTTTAAGCACACAAATATACCCCAAGCAAATTACATTAAAATTGAGAGGATTTAACAATCATTTAAAAAGTCATAGCCAGCTATTACTTTTCT--GCCCATCTCCTTACCCTGCAATCTTTATGTACAGATTGCTTATTAATCTGGCAAATTGAAAGACGCCCTGCTTGTCTCACACACAAAGAAGTGGGACTTCTGAGCCACAAGATCCACCATCTTTTGTATGTGAGCTCATTAACCCTTTTGAAGACTGCT---AACAAGAGGAAGTTAACCATTCCTCCTTATAAAAAGCAAACACTTATGGCTTTGGCAGTCTGGAAATTGGCTGGATTACCAAGGGTTAACCGTCAAAATCCTCACTTGCTGGCCCTCCCTCCACCCTTTCCTTGCCTGCAGCCGGGCAGGAAGG---TAGGTGGTAGGGGAGAGA--ACAAGACTGTTTAGACCAAAGGCCCCTTTTTAATGGAGATTAAGTGACCGGCTTGGTCCTTCTCCAGTTCTCTATTTTGTTCTATTGGCTCATTTCTTCCTCTCATTATTTTTGGTTTCACAACGGGAAACGTTGAGTTCTTGTTGCAAGGCTGGTTTTGGAAAATTCGACACTTACTATCCAATTTTTTTGCGACGTCAGCACCTCGGGCTCAGGGGGGGAGGGGGTTAAAATTTTGGAG-AAAAAAAACAAAACAACCAACCAGGACCCAAAACTCAATTATTTGGGGGGCCTCATTGGATCAAAAAGTCTCGTAAAAAATTGAAGGCCAACTCAGTATTCATTTTCCCCCCACCCAACTCCATTTAGGGAGGGGGGGTCGTAGAAAAAAAAGTTCTGGGTGGATTCAAAAAAGTAAACGCTGGATGAGTGGATTTGGGTGGGTTTGGGAAGGGTGGGTGGTTGATTATTTTTGAAGTTATGTGGTGACGGTCCTTCGGCCACAGATTTCAAGTCCCATGCAGCGTGGGCTGGTGGGGTGGGCAAGACAGGTGGGAAGGGGCAGAAGACACAAGTGGTTGGGCTGGTGGCTGCTGTTTTCCCTTTCCCCCCTC----AGGATCCTCTCAAGGGCTTAGATGGTGCTGCGGCTTGTTTCTTTTTTCCTCGTGACCGGCCTGTCTTTCTCCGAGAAAATTCAAACCTGGGATAAAAGGAACACAAGGGAGAAAGATACAATCAACACGGGTTGCTTTAAA-CACGCACAAGTACCATGATTGTTGTCGTCAAACACCTCCAGGTCCCAACGAGAACACAGCCGCGTTCCATAAGCCATGGTCCTCAAAACAACCCATGC----CTAACCCCCTCCCCAG-TCCAACAAGCTCAACAATACTTTACCCTCCAACCGACAGGATACCCAAACTTACCTCTAAACGAACCCCAGAATGGCGCCTGTCTGCTCGGGCGGTGTCTTTTATACCCGGACGCCGCCCAACGCGCCCAAACATGCTAGTGAAACGCCCTTGTCGCGAGACATTGTGCGCGAGGCGTGAATTCATTGGCCAACCCGAAAGACAACTCGCTAGCTGATTGGGTAGCCTTCCTTCACCTTCGCTCAGCCCCTTCCCCCTCGGTACTTTCTTCCGCCTCCTTCCTGGCCCCCCCG--ACAAGCGCGTGACCGGGGAGCCTAGCACCTCCCTTTCCTCTGTTTCCACCACTTCCGTCCTCGAGAACAGTTCTCACCCTGG-TTGGTAGAACCGGGCCGGCGCATGCGCAGTGAGAAGATGTCCCTCGAAATCTCCCTCAAAATTGCTTAAAACGCAAGCAGTAAGTATAAGATCTAGAAGTCGTACTGACTGGCTCAGGAAAAACGCAATTTTGAGGCCAAATTCGATTGTGACGCAGTAGAAATTGACTTCTCCAC-ACGGCCCCCCTTTTACGCTTCCGTCCTGACGCAAGTGCGCGGCCGCCTCCCGCACTGCGGGCTCGCCCTCGCCCCTATCCTAGTCAGTGTCTTGGAGCATGCGCAGTCGCCTTTCCG---------GGATTGGGCGTGCGTCAAGATGGCGGCCTCCGCATTGCGTTCGTGGCTGAGGCCCCTTCCTGGCCTTTCGCCCTTCAGAAGTGCCTACGGAGTTCAGGTAACTCCTTGGAGCACATCTTGTACAACCGCATCTTAGTTATACCTTGTCTAGGGCATCGCTCCTTTGCTGGGAATCCAGGAGCGGAATCTTTCCCAAGTGCTATTATGCCTTGGCTGTCTAGGCAGCAGTGCTCCCACCACCCTTCCCCTTCCCCTTGCTCTCAATACTGTGCGAATTTTTAATCGCCAGACGAGGGAAAAGAGCC-TGGTTAGATACCATCCTTTT-CCAGCGTACCAACTCGGCTAAAGCACC-AGGTGAAGGATTGGGCCTCT---------TGGTCGT a score=23037 s hg19.chr6_ssto_hap7 1918375 532 + 4928567 ACAACCAGCTGTTAACTATGCAAGTGGTGACTAAATCTGTGTTGCTCTGGAATGTCCTTGGGGAAATTAGGGATCCCAATTTCTACCAACCTTGCTATTTCTCAATAAGGTCAGGATATATTCTTACGACCTGAGGAC-AGTTTCTCAGCTCTCTTT-----ATTAAATCAGTTT-------------------------------------------CTTATCGGAGT---TATGAGAGCTTAACTCCGTCCTTTGAATTGAGGTTTCCCTCCAGTCTTGTGTACTCACCTCTCTGGAGGTTCTTGGTGGGGCACGGTGAGATAGGAAGGCTTGCCCAGCTGCCACTCCCTAAAGTGGGACTGAAGAGTGGTGACAGAGGTCAACACAGAAATAATAACAGCCTTGGTAGCTTTAAAACTAGCGTTAGGACTCAAGTTTGTTCTGCCCTGTAGAATGTTGACCTTCAGCTTTTATGAAAATGGGCAACTCAGTGACTTC--ATTGGATTGATTTGGAGACTCACCTGTCTTCTGCATCCCCTCCCCACCACACATCTTAGTTCCAAGAACCTAGATATCCTTCCT s canFam2.chr12 3436920 567 + 75515492 ACAGTCAGCTCCTAAGCGTGCATGTGATGTCTAAACTTGTCATTCCCTGGAGTGCCCTTTTTGA-----GAAACACTAGCTTCTTCCTGCGGAGCGATCCGCGGATAAAGCCAGGATACGTTCTCACGACCTGGGGCCTACTTTCTTAGCTCTCTTTCTCTCACTCAATTACTTTGGGAGGGGGGGGTTCTGTTTTAGTTTTTGTTTTTCTTTTCCCTCTTCTCGGAGTATACATGAGGCCTTTACTTAGTCCTTTAGGTTGAGGTTTTCCCGCAGCCTCATGTACTCACCACACTGAAGGTTCTTGGTGGGGCCAGGTGAGATAGGAAAACTTGCAAAGTTGGCACTTCCTAAAGTGGGACTGAAGAATGGTGACAGGGGTCACCACGGAATTAATGACAGGCCTGGTGGCTTTAAAGCTAGCGTTAGGACTCAAGTTTGTTCTGGCCTGTGGAATGTTGACCTTCAACTTCTGTAAAA--GGGCAATTCAGTGATTCAGGATTGGGTTGAGTTGGAGACTCACCAATG------AGCCTCTCCCCACCGGGCATGACTGCTTC------CCAGTCATCTATCCT a score=38670 s hg19.chr6_ssto_hap7 1919287 776 + 4928567 ATTTGTCTTCTGAAATAAGATTGTTTTTTAGGCATATATCCCCTAACTTAGCTTTTCTTTCAGGATCCAATTGTAGAAAAGGAGAGTGGTTGTTGATTTATGTCAATTTAAACCCAACAAAAATACTTAACTTACATATGCATTCCTGTTATATTCCATTAATGCAGTATGTGTGCATTCCTCCTTTCC--AAAGTGTGATAAGCAAAACAATTTAGTCCTTTCCTTAAACTCATTCTTTTATTTTTTTCTT------CTCCTTTGTAGGTTCCCCTCCAGACTCTTTGCACCAAAGCTCCCTCTGAGGAAGATTCTTTGTCCTCAGTTCCCATTTCTCCTTATAAGGATGAGCCCTGGAAATATCTGGAATCAGAAGGTACCTCTAAAGGGGGAAAGGGAGGGTCAGATAGGATTTGAGATAAGTGGACAGAGCCACCCACTACACTCCCACCCAGGAATAACTTGTATGATCTTTCATTTCAGAATACCAGGAGCGATATGGTTCTCGCCCCGTCTGGGCTGACTACCGCCGCAACCACAAGGGTGGTGTACCCCCACAGCGGACTCGGAAGACATGTATTGTGAGTTTCTGAGAGTGGGATGTGGA------------GTGCGGGGAGGCCACAAGTAACAGTAACAGCAGCACTTTTTCTGACGTG--TTTGAACATCCTTAACTGCTGTTTTTTTTCTCTCTACAGCGTCGGAATAAAGTTGTTGGGAATCCCTGCCCCATCTGTCGAGATCACAAGTTGCATGTTGACTTTAGGGTAAGGAGAGTCTTTTCT s canFam2.chr12 3437487 748 + 75515492 AGTTACCTTCTCACGT--------------------------------TAGGTTCTCCTTCAGGATCCAG----AAGACAGAAGAGTGGTTGTTGAT----GTTACTTCTACCCTAACAAAAATTCT-ACTTTGTATATATATTGCCTCTATATTCTGTTAATACAATGAGCATGTATTCCTCTTCTCCCTAACATATGGGCAGTGAAACTATCCAGTCCTTTCCTTGAACTCATTTGCTCATTTTTTTTTTTTTTGCCTTCTTTATAGGTTCCCCTCCAGACTCTTTGCACCAAAGGCCCCCCTGAGGAAGATTCTTTGCCCCCAGTTCCCATAAGTCCTTATAAGAATGAACCGTGGAAATATCTGGACTCAGAAGGTACCTCTAAAATGGAAAGGGGAGAATCA-AGGGGGTCTGAAATAA----ACAGAGACACTT-CTGCTATCCCTACCAGGAATAA--TGTGTGGTCTTTCATTTCAGAATACCAGAATCGTTACAGTACTCGCCCTGTCTGGGCTGACTACCGTAGAAACCACAAAGGTGGAATACCCCCACAGCGGACTCGAAAGACATGTATTGTGAGTTTCTGAAGGTGGTACGTGGATGGGATGTGGAGGAGAGTGGAGGCCATA-GTGACAGTGGCACCAGCACTTTTTCTCATAGGACTTTGAACATCTTTCACCTTCTAGTTTCTTCTCTCCACAGCGTAGAGATAAAGTTGCTGGGAATCCCTGCCCCATCTGCCGTGATCACAAGCTGCATGTCGACTTTAGGGTAAGGAGAATCTTCTCC a score=5063 s hg19.chr6_ssto_hap7 1920410 172 + 4928567 aaaataaaGATTAGGAGCCCCTTTGCAGTGCCAAAGAGATTACTGTAGGTGCCCCACACTTCGTATATCCAGGAGGCCCTACAGTCCGTTTTATAGTAACTGTTTCTGGCATTATAAAAACATCCCTCC-AGCCTTTTACCTTCTACTATGGATTGTACTGA--AAGTTTTATCC s canFam2.chr12 3438235 150 + 75515492 AAGATAAGGACTTGGATTCTCTTTGTAGCGCTAGAGAGATTACCACGGGTGTCCCAC----------------------TACAGTCCATTT-GCATTCATT--TTCTAGTAGTATGAAAACTTCTTTTCTAGTCTTTTATCTTGTACTGTGGTTCATACTAATAAAGCTTTATGt a score=3277 s hg19.chr6_ssto_hap7 1920926 92 + 4928567 GAAATGGCTATTTCTAGTGGGAGAGCCAATATCCAAAGATTCGTTTGTATT-------CATTACAGTTATTACCAAATATATTGGCCCA-------------------CTTTCTTCCT s canFam2.chr12 3438554 117 + 75515492 AAAATGTCTATTTCTAATGGGAGAGC-AGTACTCAAAGGTTCATTTATATCTTCTATCCATCCCAATTTTTAGCAAGTAGTTTGGGCTAGTGTTtttcttttttctttctttctttct a score=5130 s hg19.chr6_ssto_hap7 1921018 152 + 4928567 GAGGTT----------------------------------TTCTTTATTT------------CCTTGTCAATGTTCAGTGCCATGCTGGCACCTGGGGCTGGAGGGCAGGTATATGAAGCAAGATAGAG---TCCATTATTTTTCAAAAAGCCTTCAATATGTGAGAAGGACAGGATTTGCTCCTTAAAGAATTTGAAAAC s canFam2.chr12 3438843 196 + 75515492 GAGGTCGGTTTTGTTGTTTTTTGGGTTTTGTTGTGTTTTGTTTTTTGTTTGGGGTTTTTTGGTCATGTAACTATTTAATGGCATGCCAAGATTTAAGGCTGGAAGGCAGATACATGAAGCAAGATACAGAGTTTAATTGTTTTTCAGAAAGCCTTTATTGC-----aagaacaggacttgctccttaaaaagttcagaaac a score=8862 s hg19.chr6_ssto_hap7 1921509 198 + 4928567 GGGAAAGTGTTCTTCtgagcttgcagcaaaagtattagagcagaagctatatggctgatcatcagggaagtagtagagcatttggataacagtcagaaaatgggggtatttgactgcaataagaacccttctaacACAGGTTATTTAGGAGTCCCATAGATA----ATTTCCCAGTTTCAATTGCATATAATTGGTTATAAA s canFam2.chr12 3439235 198 + 75515492 gggaaaatgttct---gagcctgcagtgaaggtattagagcagaagctgaatgattggtcattaggggagttggaaagaattcacagatcagtcagtagatgggggtgtctgattgttcttaggtcccttctgacccCA-TTGTAAGAGGGTCCTATAGATAGATAACTTCTCAATTTCAACTATGTAGGATTGGTTATAAA a score=9038 s hg19.chr6_ssto_hap7 1922017 320 + 4928567 CAGAGATTATAATTAATTACATAACTGAGAGAGAGAAATGTTACAAATTTAGTAGCATGGGTGATTCTGCTTGC-ATTCTACTCTACAA-TGTACCTGCTTTTTTTTCAAGAGTCTCATTTCCTA--GTTAATTTGCTGAGAGAG-AGTTCTATGTAA-----ATTGTAAAATTATTCTTAGTA---TATAAATTATATTCAGCATACTATTAAATACATTAGTTGTTTATACATACACATTACAATA-------TCATTTTTTGGGTGATTTCTGGGATTTCCAA-TGACCAGCCCCAGTTTTTCACCTAAAGG-CTGACGTTAGAACTTAACCTCTGCAG s canFam2.chr12 3439639 333 + 75515492 TACAGTTTAGAATCAGTTACATGATCAAGGAAGAAAGAA--TATGAATTGAACAGTGCAAATGA--CTGCTTGCTCTTCTACTCCACAAGCATATCTACTTTTTTC-CATGGGTGTCATCTCCTGTGACTAACCCACTGGCTGAGTCATTCTACATAATTAAAACTATGAAATTGGTCTTAGTAGCATATATGTTACATACAGCATGCTATCATATTCATA----TTTTAAACGTGCACATTATAACAGATACTGCTTTTCTTTGGGTGATTTCAGGGATTACCACCTTACTATCCCCAATTTTTTGCATGAAGGGCTGATTTTACAGCTTAACTCCTGCAG a score=20342 s hg19.chr6_ssto_hap7 1922660 469 + 4928567 AAGAGATTTCTATGGGAG-CACAGTGACAGAATATGGGATGTGCA---------------------------------------------------AGGATGGATTCAGTGAATTGATGAAGCCAAA-CTGGGACATGAAGGAGGATGGCATCTGGAGAGCTGTAGAGGGGTGAAGGTGGTCCATGTGGGTGTGTAGGGATTGTGTACTTTCGATGTCCAAAGATCCTGCTGCTCTCCCTGCCTCTTTTCCTCACGTTTCTCTACCACTTTCCCCCACAGAACGTGAAGCTCTTGGAGCAATTTGTCTGCGCCCACACGGGTATCATCTTCTATGCTCCATACACAGGTTAGCCCATCATCCCTG-CACCACCAGAGAGCTTTTCCTTGTGGCATGCCTTGTTTATGTAGTTGGCCAATAGGTATTTGTTCAGTGGCTCCTGCTTATAGCCTAAAAGGTCTGGCTGAACCTTTT---GGAAATCTTGGCTTGCTGGGGGCTAAAGTAATTAAATGTGGACAAAAGA s canFam2.chr12 3439972 509 + 75515492 AAGGGGATTCTATAGGAGTCTCAGTGACAGAATGTAGGGTGAGCATCGGAAATGGTTGGAAAGCCAAGAAAGAGGAAACGTTTACTACAGTTTTCAGGAATGTGTTCAGCAGAGTGATGGGGCTAAAGCTGGGACACGAAGGAGGGTAGCACCTGGAGAG----ACAGGCATTTAGGGTGTCCACACACATGTGTAGGGATTGCGCACTTCCAATTTCTCAAGGTCTTGCTGCTCTCCCTACCCTCT---CTCATGTTTCCCCACCACTTTCCCCCACAGAACGTGAAGCTCCTGGAACAGTTTGTCTGCGCCCACACAGGTGTCATCTTCCATGCCCCATATACAGGTTAGTCTGTCGATCTTGTCACCACCAGAATAGCTTTTCCTGGAGCACTTCTTATTTATTCATTCATACAACAGGTATCTG----GTGGCTCCTACATATGACATAAAAAACGTGAATGAACCTTTTTTTGGAAATCTTGCCTTAAAGGGTAC------ATTTACATGTGGATAAAAGG a score=17125 s hg19.chr6_ssto_hap7 1923421 387 + 4928567 GTACTTCTGTAAGCAAACTATCTAAATGTAGTTTTTAATTGATAAACAGTGATTAATTCCTTTCTATAGGGTCTTTTAACTTTTACAAAAGACTT-CTCACAAATTGTCACATAAGTTATTTTATATCATTGTCAATTGGATTAGATTTTCCAAACT-TGGAATCGTAAATTTAACAATTCAGAATTATATTTATTCCCTAACTACAGTCACAGGGCAAATCTGGCCcactgtcacgtccatttgttttcatattttctgcaattgcttccatgctacaatggcagagttgagtagctgagacagagaccacaggacctgcagagtttaaaatatttactatatgactctagacagaaaaattttgctaacccctgCTCTGAAGCAAGA s canFam2.chr12 3440490 372 + 75515492 GTACCAATGTAACTAAATTATTTAAACATGGCTCTTAAAAGATAAGTGGTGGT-AATTATTTCCTTTTGGGTCTCTCTGCTTTTACAAAAGGTTTTCTAGCAAATTGTCTTATAAGTTCTTTT-TGCCATCGACAATCCAAGTAGATCTTCCAAAATCTGGAATGGTAATCCTAACAATTTAAGATTACGTCTATTCT-TAATGACC---------CAAATCtggcccactgccatgtctgtttatgtccatattgtctacaactgcttgcagtctacaatggcagagctaagcagctgagacagagactgcggggcctgcagagcctaaaat-----ttatgtggccccacacagaaagattttgtcagcctcAGCTCTAAAGCAAAG a score=12634 s hg19.chr6_ssto_hap7 1924451 266 + 4928567 TTGCAGAGAATAATCTGAATTCACCATTGTTGGGGGTGGCAGTACAATCAGTG---TTCAGTTTGTCAAG-AGTTTCT----------------TATAGTCAAGCTGTAAAG-GCTGAAGGGACTATTATTGTTACTCTCTCAGATTGCCTTCCCCAACTCTGAAATCTCTTTTCCCTTTATTGAATCTTT----GTGGATTGTTCAACTCAACCCTCTAATTAACCACACTTGCCCATTAAATTGTGTTCT-CCCTGTCTTGGAGGTTTTACCATTAAATGGCTTCTCTAT s canFam2.chr12 3440867 286 + 75515492 TTGCAAAGAGTAATCTGAAT-CACCATT-TGGGGGATGGCAGTATGATCAGTGGAGTTTGGTTTGTCAGGGAGTCTTTAAAGATGGGCTTTATATAAAGTCAAGCTATAAAAAGCCTAAGGGGCTATT-TTGCTACTCTC--AGATCACCTTCTCTAGATTGGGAGCCCTTTCTTCCTTTAGTGAATCATTCTCGGTGGATTGTCCAACCCAAACTT-TAATTAATCACACTTGCCTTTTGAATTGTGTTCTGCTCTGTCTTGGAGGCTTTACCATTAAATGGCTTTTCTAT a score=56660 s hg19.chr6_ssto_hap7 1924717 1152 + 4928567 AGTGGCTAGACCCTCCTAaa--tctttatcccagctctccaaaagatgggggagattctttcctttgggcagatggggaaactgaggtccatggaggggtcaggggaAAGGGGTCATTAGGTAAAGCCAATCCTTCCCAATCTACCCCTCTGTCACCATATGGAAGCAGTTGTGTTCTATTATTTACTGTGCCTTAAAGAACAAGA-------TATTTTTCTCCCCACAGGAGTCTGTGTGAAGCAGCACAAGCGGTTGACCCAGGCCATCCAGAAAGCCAGGGATCATGGTGAGCATGAGACGGGGCACACAGCAGTTTTGTTTAGGTATAAGGAAGATGACTTAGGGCTAGAAAATGGATATAAATGCTCACACCTGTTCAAGATGGTAGCACCCAGCATGTTCTTCCTGA--------------CGTTACATTGTCCCCTGTCCTTTCTCCTGAGTGTCTTACTTTATCATTGTCCTGTCTCCTTGTTCTTTGTCTTTCCATCCTTTTCCCTCCTATTTTACAACTGCTGGTCTCAATGCCTTAGG----------AAGTTCTTTATATAAATGTCTGGCCctggactacatggcactgctgcataagttagtaaaaagtatacccctctgctagggcagatgcagcttcatagtccttgttcagcactgcacagctttgtaagcaagagccccagcagtatg----tcagcccacacttgccctctgggccggtcacctgtttgcagtatacaacatgcataaatgtacctggtggctctgACTGGTCCTTC----CCTTTATA-ATCCTTTTTCTTACTTCATCTAAACC--ACCCTCCTCA-TTGCCTCTTAAATTTCTTTTCTTTTTTAATCCCTTAGGTCTCCTCATTTACCACATCCCCCAGGTTGAACCACGGGACCTTGACTTCAGTACCTCTCATGGGGCTGTGAGTGCTACTCCGCCAGCCCCCACCCTGGTCTCAGGTGACCCCTGGTACCCATGGTACAACTGGAAACAGCCACCGGAGAGAGAACTGTCTCGCCTTCGCCGGCTTTACCAGGGTCATCTCCAAGAAGAGAGTGGCCCCCCACCTGAGTCAATGCCCAAGATGCCCCCTAGAACACCAGCGGAAGCCTCCTCCACTGGGCAGACAGGCCCTCAGAGTGCTCTGTAGGAGCTGTAGACTGGGA s canFam2.chr12 3441350 1159 + 75515492 AGTGGCTGGACCCCCTTGAAAGTCTCAGCCTCAGCTTTCAGAAAG--GGGGGGGGTTCTTCTGATTGGGTAGATGGGGAAAC--AGGCCCATCAAGGGGTCAGGGAAGTAGGGTTATTAGGTGGAGC-AAGATTTCCAAGCACAGCTCTTTATAATCATATAGAAGCAGTTGTATACT-----CTATCGTGCTTTCTAGAACAAGCACTGAGTTCTCTTTCTCCCTACAGGGGTCTGTATGAAGCAACACAAGAAGTTGACCCAGGCCATCCAGAAAGCCAGAGATCATGGTGAGCGTGAGAATAGACCCAGTGCAGTTTTATTAG----CCAAAAAGGTGATTTAGGGCTGAAGGGTAGATACAAATATTTCAACTTGTCTGAGAAGGTGGCACCTACCATGCTCTTCCCAAGAATCTCCTTTCAGCACTCCACTGTCCCTTTTTCTCTCTCATGAGT---TTATCTTGTCATTGCCCTGTCCCCTTAAT---TCTCTTTCCTTTCTCTTCCCT-----TTTATAAGTATTGGTCCCAGTGCCAGAGATAGATGATAAGAGATCTTTGTATAAATTTCTGGCCCTGGGCTCCatgacacctttgcagaaattaagaaagga---atggctctgcaagtgcagatgcagctctgtagccttgatgcagagatgcacagcttggcagacaagagccccagcagtaagcacatcggttgaca-ttgctcccttggccagttgccttt-----gtgtacaacatgcataaatacaccctctggctctgACTGGTTCCTCGCTCCCTTTTTATGTCATTTTACTTGTCTTAACCTGACCTAGCCTTCCTTGCTTGCCTCCCTCACTTTCTCT-TTTCTTAATCCCCTAGGTCTCCTCAGTTACCACATTCCTCAGGTTGAACCTCGGGACCTTGATTTCAGTACCTCTCACGGAGCTGTGAGTGCTACTCCGCCAGCCCCCACCCTGGTTTCAGGTGACCCCTGGTATCCATGGTACAGTTGGAAACAGCCACCGGAGAGAGAGCTGTCCCGCCTTCGACGGCTCTATCAGGGCCATCTTCGAGAAGAGAGCGGTCCCCCACCTGAGTCAATGCCTGAAGTGCCCCTTAGCAGCCCAACCGAATCTTCCTCCACTGAGGAGA---GCCCTCAGAGTGCTCTGTAGGAGCCATAGACCGGGA a score=121196 s hg19.chr6_ssto_hap7 1926185 2474 + 4928567 AGGGACTAGGAGATAATGTGTATGTAGGTTTATGTGATGGGATATCACCCTGAAGAGTTGTGTCTTT-TGTGGCCAGTGACAAATCCAG------------GAAATGAATGTTGCTGATAGGGATAAAT---CTTGAGGCTGAGGGCGGGTGGTACAGATGTGTATGGGAAACCCCAACCCCTATATATTGTAAATAGATGGGCTGGGCTAAACATTGTTGCCGTTTCATACTTCTACC-AACTCAGCTTTTACACAATAAAGCTCTACTGTCTCTGGTTTGCTTTGGGCT--GTTTCCGATGAATGCCATTAGCGGGGGGTGGGCTGAGTGATGGTCTTTTCATATAAGCAATTGGGTGATGCTGTGGGGAGATAAGTGGTCAGGCTTAAGCCAGCCTTGCC-TGTGACGCCTGGGACTAGAAG---CCGGGGATGGGCAGCTGTGCCACTCTGTCAAGAT--GCCTTGTGGGCCCCCACTCCACAGCATGGCCCAC--------TGTTC-------ACTGAGGGGATAAAAGGTTGGACAGTGAGACACTGGGCCAAGGAAGACTA--------------CGTTGCCATGGCACTCACTGCCGTGGGATGCAGGGATGGAAAGGAGTGGCACTGCTAGGGGCACAGCTGGTTTGGCAAGAAAAACGGGGGCCCTGTCAGTTGCCAGGACGCTAGGGGGCAAGGTCTACAGGCG------GGGCTCCT-------------GGAAATAAAGACTCCGAGAGGCGGT-----------------GCGGCGAGAGGAGGGGCGGAAGTGACGTCGTGTGGGGCGGGTCCGACCGCGCACAATGGGCCATGGAGTTCCCGTTCGATGTGGACGCGCTGTTCCCGGAGCGGATCACGGTGCTGGACCAGCACCTGAGGCCCCCAGCCCGCCGACCCGGAACCACAACGCCGGCCCGGTGACAGCTCAAACCCACCCTCTGGCCCTTTTCTCCCGGTTCCTCTCCAAACCTGGTCCAGGCACCACGCCCCCTTCTCACTGACTAGTGATCGCCCCTTTTGATGTCCAGGCCTGCCTTTTTGGTGACCTCTGACCCTGGGCCTA-GTGGGATTGATCAGCGCTTGGATCTGTGACCTTTCAC-CCCGGGCCCAAAATGTCCCAATCAAAGGATGTGGTTGACCTGGCCTTTCTGCTTCCTCACAATAACCTTAAGGGAGGAGGGAGTGTGCCACCTTGAA-AGGTGTGACAGAAGTTTGGGTTTCAGAA-----GGGTGGGGTGGGAAATCAGATTGGAAGACTCCCAGGCAAAGGCAGGGAGCCTTCAGTGTTAAACCTGGGTTGGAGTTGTGGCCCAGGTTCCCAGGACTGACTGCCTAGGACCCGCTAATTTAG-TGAGTATCTGACTCTTTATTTCTTCTCTTTCTCTAGTGTTGATCTACAGCAGCAAATTATGACCATTATAGATGAACTGGGCAAGGCTTCTGCCAAGGTACTGGAGAGTTTTTAGATGGAGTAAA-GGGAGGACCTCTGTGGGGATGGTATATAAGGGAGGCCTGGGTCCTTCGGAG-AGACTTGCAGAAAGTCTGACTTAATCTTCCCTGCAGGCCCAGAATCTTTCCGCTCCTATCACTAGTGCATCAAGGATGCAGAGTAACCGCCATGTTGTTTATATTCTCAAAGACAGTTCAGCCCGACCGTGAGTGCCACATGCTCTTCCATCCCATACTTAATTCCTTCCTTCCTCAGCCCTTCCCCCATCTTTGACTATCTCTTGCAGATAGATACCACTAGCCTG-TTCATTATTTTCCCTGTCCTACAGGGCTGGAAAAGGAGCCATTATTGGTTTCATCAAAGTTGGATACAAGAAGCTCTTTGTACTGGTGAGTGTTATTGGATGCTAGGAGTTCGTATACCTTGGTTTCTGAGAACAAAAGTGCTGGAGGTTAGGGGGCAGCAGAGATGCCGGGGTTCCTAAAACATTTTTATTGTTTCT---CTCTTAGGATGATCGTGAGGCTCATAATGAGGTAGAACCACTTTGCATCCTGGACTTTTACATCCATGAGTCTGTGCAACGCCATGGCCATGGGCGAGAACTCTTCCAGTATATGTTGCAGGTATCACTGACCTCTTCACTGGTTCATCCAAACTAG-------GGGCTCCTTTGCCCTGAGCCCTTCCAGAAGCCCTGCCTCCCACCCCCCATGTTCCCATGTCATTCTATTCCCTTCCCAGGCTTCTGGCTTCCTGTTGGCATGCTTTCCCCATACTTCCTCCTACCCTGAGTCTCCTTTTCCCTGCAGAAGGAGCGAGTGGAACCGCACCAACTGGCAATTGACCGACCCTCACAGAAGCTGCTGAAATTCCTGAATAAGCACTACAATCTGGAGACCACAGTCCCACAGGTTAGAGGTTTCAGAGAATAGATCCCCACTGAGCATTCCCATTGAATTTATTTGTTATTTATGGCAAAGAAGTAGTGAC-------------TTATTTCCTATCACATAGGTTTCATTTTCTACAACCAGGCTCTTTCTTTCTCT------------------------TGTGGTACCATCTCTCATCCTGTAGTGACTTCTTTCTCATC s canFam2.chr12 3442509 2495 + 75515492 AGGGATTAAGGGATAGTGCCTAGGAA---TTACATGATGGGATTTCACTCTCAAGAGTTGTGTCTGTATGTGGCCAATGGCAGGCCCAGGGCCAGAGGAAAGAAATGATTGCTGTTGAAGGGAATAAATGCATCGGAGGCTTAAGGAGGGCAGGACAGATGTGTATGGGAAACCTCAACCCCTATGTATTGTAAATA---------GGCTAAACATTGTTAC---TTCCAATGTCTGCTAAACTTGGCTTTTCCACAATAAAGCTGTATTTCCTGT------TTCTGGGCTGAGTTTCAGATTAATACCATTTGTGGTGGGGAG-----GGGATG-------------------TGGGTGCTGCTGTGGGGAGAGGAGAGTTCAGGCTTGGGCCAGGCTGGCCAAGGGACTCTGGGGACCCGAAGCCACCAGGAAGGAGCAGTTGGACCATCTTGTCATGCTCAGCTtcctggcctcctggccc---tcctggccctcctggGCCGTGTTCCCACGGTACCGAGCAGCTCACTGGTTGG---GGGCGGGACTGGGGAACGGGAGGCCAGCTTGGGCGAAGAGCGTCGCTGCGG------CTTCCGCGGGCCG------------GTAGCGGCGTGGTGAGGGG----ACCGGCCTGGC--GACGGGCGGG----------------AGGGCGGATGAGGCCGTCCCCCGCGGGCGGCCCCTGAGCCCCTCCTGCCTGGCCCGGGAAACAAAGGCTCCCAGAAGTGCTTCCTCCCTCCTCACCCCGCCCCTCAGGGAGGAGCGGAAGTGACGTGAcgcggggcggggcgggccgcgcACAATGGGCCATGGAGTTCTCGTTCGACGTGGACGCGCTGCTCCCGGAGCGGATCACGGTGCTGGACCAGCACCTGCGACCCCCAGCCCGCCGACCCGGAACCACAACGCCGGCCCGGTGACATCTCAAACCCGCCCCAAAGCCCTTCTCTCCTGGTTCCTTCCGAACCCCGGTCCAGGCACCACGCCCCCTTCTC----ACGAGTGACCTCCCTTTTTGTGGCCCTGGCGCGCCCTTCTGGTGACCTTTGACCTTAGACCTAGGTGGAGTTGATGGGCACTCGTATCTGTGACCTTTCACGCCTCGGCCTGACTTGTGCTAACCGGAGCTTGTGATTGACCCGCCCTTCCGGCTTCCCTACTATAACCCC-AGGGAGGAGGGAGTGTACCGTTTTGAAGAGGTGTGGCAAAAGTTTAGGTTCCCGAAAGGTGGGGTGGGGTGGAAAACCAGACCGGAGGCCTCCAAGGTAAAGTCAGAGAGCCGTAAGTGCTGAGCCTGGGTTGGGGTTGTGGCCAAGGTTCCC--------------AGGACCCTCTAATTCAGTTGAGTATCTGACTCGTTCCT--TTTTTTTTCTATAGTGTTGATCTACAACAGCAAATTATGACCATTGTAGATGAACTGGGCAAGGCTTCTGCCAAGGTATTGGGGAGTCTTTAGATAGAGAAAAGGGGAAGGCTTCTCTGGGGCCAGTAGAT-AGGGATGCCTTGGTCCTTTGAAACAGACTTTCAGAGAGTCGGCCTTTAT-TTTCCTGCAGGCCCAGCATCTTCCTGCTCCCATCACCAGTGCATCAAGGATGCAGAGTAATCGCCATGTTATGTATGTGCTCAAAGACACTTCGGCACGACTGTGAGTGCCAGATGCCCTTCCAT-CCATACTTTATTCCTTCCTTCCCCAACCCTTCTCCCTTTGTTGACTTTCCCTTCCAAATAGTTGCTACTAGCTTGTTTCATTATTTTCCCCATCCTACAGGGCTGGCAAAGGAGCCATAATCGGCTTCCTTAAAGTTGGATACAAGAAACTCTTTGTACTGGTGA--GTTACTGGAAGCTAAGAGTTCACATGCCTTGGCTTCTGAGAATAAAAGTGCTGCATGTCGCAAGATGGTAGAGATGTCTGCG-TCCTAAAAGATACTTGTTTTTCTTTACCTCTTAGGATGATCGCGAGGCTCACAATGAGGTAGAACCACTTTGCATTCTGGACTTTTACATCCATGAATCACTTCAGCGTCATGGCCATGGGCGAGAACTCTTCCACTATATGTTGCAGGTATCACTTACTCTTTCACCAGTCCATCCAAAATAGAGATCAAAGGCCCTTGTGTGCTGACCCCCTCCAGAGACCCAGCCT-------GTGATGTTCCCATATCCTCCTACTCCCTTCCCAGGCTGCTGGGTTCCTGTTGGCATGCTCTCCCCCGACCTTCTCCTACTCTGAGTCTCCTGTTCCCTGCAGAAGGAGCGAGTTGAACCACACCAACTGGCCATTGACCGACCCTCACAGAAGCTGCTTAAGTTCCTGAATAAACATTACAACCTGGAGACCACAGTCCCACAGGTTAGAAGTTTCAGTGGGCAGATCTTCACTGAGCATTCCCATTGAATCTATTTAT--TTGGGGGCAAAGAAGTGACATCTTCGAAACACTTTTTATTCCCCATTGTGTAGGATTCATTTTATATAGCTAAGGTCttctttttttttttttttttttttttttttttGTGTGTGGTACCGTCTCTCATTCTGCAGCTA-TTCACTGTCATC a score=1270 s hg19.chr6_ssto_hap7 1929255 40 + 4928567 TATTTTGATTCTTTACCACAAGTTGTTTCCTACACCTAAt s canFam2.chr12 3445004 39 + 75515492 TATTTTAATTTTTCA-TGTGGTTTGTTCCGTATACCCAGT a score=10961 s hg19.chr6_ssto_hap7 1929911 255 + 4928567 TTTTCAACCCAAACATAGCCAGCTCATTTTCACCTCCTTGTTTTCACATAGTTCATTACTCATCTGGTCAGTCAGTATTTATTAAGGGTCCAGAATAATATGCATTCCCTGTCCTCATGGAGCTTTGGCCTAATATAGGGAAGGAAGTCTTGTTTATAACTAAGTGCAGCAAAATGTTACTAATGCTACCcattcatccaataaa----cattgagtgcctggcagtgttctgggcactaggaatggtttactcaatga s canFam2.chr12 3445049 244 + 75515492 TTTTTGCCCCAAACACAGCCTGCTCA-TTTCACCTTCTTGTTTTTATACAGGCCTTTAC------------TCAGTATTTATTAAGACT-CAGAAAAACATATATTTCTTATCCCTTGGGAGCTTTGGCCTAATACGGAGAA-TATGTTTTATGTATAAGTAAATACAATATAATGTTACTAATGCTatctgttcatttagcaaatatttattgagcccttgactccgttctgggcgctaggaatactttactcgacaa a score=9616 s hg19.chr6_ssto_hap7 1931025 221 + 4928567 aacagacaaaagtccctgtcttagtggtggagcttatattctagctggagagacaaacaaacataataaacaatatggt----taataagtgctctggaaaaatgagagcaagtaag--ggtttgggagtactcaagtaaggtggggatgggagtatgtgggattgcaggttgaaaggggat------------catcactgagaaagtgtcatttgagcaataactgaaaggaagtaa s canFam2.chr12 3445293 230 + 75515492 aacagataaaagtctttg---catttgtggagattatatcctagttggtgagacaaataca-ataaatgactatctagtgtgataataagtgctctgggaggacgagagccactaggaaggcccgcgagtac-----tactgtggggatgggagtgcatggggttgtaagtttaaataggatagtcaggggagacttcactaagaaagtgccatttgagcaataacttagaggaagtaa a score=7482 s hg19.chr6_ssto_hap7 1931854 226 + 4928567 gagtaagagccaagaaatatctggagagagagcatcccagacagaaggtaccaccagtgtatgg-ccgtgaggtgggagtgtgcctgaaagagcaaattggc---tgtgtccagagcagcatgagtcagcggaggagtatggtaggagatgagaccagagaggtaatgcggaggaggggc---------cttataggctactgcaaaga--ctggcttttattttaagtaaaaaataagat s canFam2.chr12 3445523 237 + 75515492 gaataagagccaggtaatatgtggagagagggcatcccaggcagaaggaatggcaagggcaaagtccatgagataggaatgtgcctgagcaagtgaattggctgatgtagctagagcaccaagagtgaa-ggaggagtgtggt---agattagatcagccagcagcagaggaggaataacatttcttatcttacagattatcgtaaaggttttgggttatgctcttagtggaaaaaggagt a score=2489 s hg19.chr6_ssto_hap7 1932661 44 + 4928567 tgattttttcctttttaacaagatcactttggctgttaagaaca s canFam2.chr12 3445787 44 + 75515492 tgatatgatctgatttagccagaccactttggctgttaagaaca a score=18049 s hg19.chr6_ssto_hap7 1933021 479 + 4928567 gcaataagggagccagagtagaagcaagtagactaattaggcagcaacaatcctggcgaaaaatggtggtggctcagaccaaggtggtagcagtagtgatggtaaagagtggtcaaattttaaatattttgaaggtaaagcaagtaagatttcctgacagattgtatgtggagaaagaggactttaggacaatgccaa----agcctgagcagctggaagaatgaagttgctttaactgagatggtaggtagaccagctt-tgggggaaatactaggagtacatttttaatatgttaattggagatgtctgtgatatgtccaggtttgagtagacagttggatacttccctggagatcagggaggaggtttggggaggagagttttcagcatacatctggtatctaaagccaacagacaggatgcgatcaccatagaaagattataga--------tagagaagCTGCCCCTTTGGGCCCTC-TTTAAGAAGT s canFam2.chr12 3445831 462 + 75515492 gcagtagggaaacaaagatagaagcaaatagactagttaggaagcaacaatcctgatgaaaaatggtggtggcttaaaccaagatggtagcactagagaggataaagggtagtcaggttttaaatattttgaagtt-aagtaaataagatttcttgatagattatctatggataaa------ttaaggatcatccaaaactcagcctgagccattggacagatgaggtctacataactgagatgataggtggagcaaattgggggggaaatggtaggagtccatattgattttgttaa--------------------tcctaggttgaatggatagttgggtacttctc--gggtttagagaagagatttggaatagaaacatctctgtatacacagggtatt--gagcagtgaggcaggctgaggtcactaaggggcgagtatagagaaatggttcaaggacttgagaccttgagtactcttttaagaggt a score=14345 s hg19.chr6_ssto_hap7 1933500 230 + 4928567 GAGGACCCCCAACTGGCTGCTCTGAAAAGCCATCTTTGCATTGTTCCTG-GTTCGGTGTCCTGCTCACCACAGCCACCTCCGCCATGCACTTCCTCTGCTGCCTCAGAGTCTGGCAGCTTAATCGACATAGTCCCCAAACTCTCACTTTCTTCTTAATCCCTTGCATCGGATCACCGCTGTGCCCCACCATGTCAGAGGCAGTTGTGGACACAAGCTCCGTGATCACCACC s canFam2.chr25 46560800 231 + 54563659 GTGAGTTCCCCACTGGCTGCTCTGAAAAGCCATCTTTGCATTGTTCCTGTGTCCGGCTCCCCGTTCGCCGCAACCACCTCCGCCGCGCGCCTCCTCCGCCTCCGCGGACTCCGGCAGCTCCCTCGCCAGAGTCCTCGAACTCTTGCTCTCTTTTTAATCCGCTGCATCGGATCACCGGCGTGCCCCATCATGTCAGACGCGGCCGTGGACACCAGCTCCGAGATCACCACC a score=4874 s hg19.chr6_ssto_hap7 1933730 68 + 4928567 AAGGACTTCAAGGAGAAG-------TTGTGGAGGAGGCAGAAAGTGGAAGAGACGCCCATGCTAACGGGAACGCT s canFam2.chr25 46563648 75 + 54563659 AAGGACTTAAAGGAGAAGAAGGAAGTTGTGGAGGAGGCAGAGAATGGAAGAGACGCGCCTGCTAATGGGAACGCT a score=8049 s hg19.chr6_ssto_hap7 1933798 97 + 4928567 AATgaggaaaatggggagcaggaggctgacaacgaggtagatgaagaagaggaacagggtggggagaaagaggagaaggaagaggaaggtgatggtg s canFam2.chr25 46563972 97 + 54563659 aatgaggaaaatggggagcaggaggctgacaatgaggtagatgaagaagaggaggaaggcggggaggaagaagaggaggaggaggaAGGTGATGGTG a score=3883 s hg19.chr6_ssto_hap7 1933895 68 + 4928567 aagaaaagaacggagatgaaaacgaagCAGCTGAGGCGG-TATGGACAAATGGGCAGCTGATGATGATG s canFam2.chr25 46564563 69 + 54563659 AGGAAGAGGATGGAGATGAAGATGAGGAGGCCGAGGCAGCTACGGGCAAACGGGCAGCTGAAGACGATG a score=22925 s hg19.chr6_ssto_hap7 1933963 347 + 4928567 AAGATGACGATGTTGATACCAAGCAGCAGAAGGCCAGTGAGGATGATTAGACAGCAAAAAAA-----GAAAAGTTAAACTTTA---AATTAAGGCCACCGTGACCTATTCACCCTCCACTTCCCATCTCAGAATCTAAACATGGTTGCCCTCGAGAGG---------CCTGCTTGCCCTCCACAGACAGTGCCACT-GCAGATGACAGGCACTCACCACCACCCAACCCAAACCA----GAGAATTTGCAACAGAGGAGGAAAAAAGAACCAAAACTTCCAAGGTCTTGCTCTTTT----AAAAGTACTTTAAAAAGGAAG-TTTGTTTGTATTTTTTATTTACATTTTATATTTTTGTACATATTGTTAGGGT s canFam2.chr25 46564882 374 + 54563659 AGGATGACGACGTCGACACCAAGAAGCAGAAGACTGATGAGGATGACTAGACAGCAAAAAAAAAAAGGAAAAGTTAAACTTAACAAAAAAAAGGCCACCGTGACCTATTCACCCTCCACTTCCCGTCTCAGAATCTAAACGTGGTCACCTTCGAGTAGAGAGTCCCGCCCGCCTGCCCAACGCGGGCAGCGCCACCCGCAGATGACACACGCTCTCCGCCACCCAACCAAAACCACAACGTGAATTTGCAACAGGGGAGGAAAAAAGAACCAAAACTTCCAAGGCCCTGCTTTTTTTCTTAAAAGTACTTTAAAAAGGAAAATTTGTTTGTATTTTTTATTTACATTTTATATTTTTGTACATATTGTTAGGGG a score=10229 s hg19.chr6_ssto_hap7 1934610 156 + 4928567 TCAGTCATTTTTAATGATCTCAGATGACCAAGCCAGCCTTTGGAGGGTTCTCTGTCTTACTTCTGACTTTACTTGTGGTGTGACCATATTCATTATAATCTCAAAGGAGGaaaaaa-------aaaaaaaaaaaaaaCCTTGTTTAAAAAAAAAAAAAAAGCc s canFam2.chr25 46565256 153 + 54563659 TCAGCCATTTTTAATGATCTCGGATGACCAAACCAGCCTTCGGAGCGTTCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACCATGTTCATTATAATCTCAAAGGAGAAAAAAAACCTTGTAAAAAAAGCAAAAAC----------AACAACAAAAAAACA a score=16737 s hg19.chr6_ssto_hap7 1935067 227 + 4928567 GTCTCGTTCTGAGCATTCCAGTAGCTTCTTTAGTGTATGTAGTTAGTTGTACCATAAGTAGTTGGTTTGTGTGAGATGGTTAAAAAGGCCAAAGATAAAATGTTTCATTTATTTGCCTTTTTTGTCTATGAAATGGCTGCTTATTTATTTAGGCCTATTTGATGTATGTGTGAAACAATATTGTGCAACAATAAACCCAAATTTTATTTTGCTGAGTTGTTCTAACA s canFam2.chr25 46565409 225 + 54563659 ATCTTATTCCGAGCATTCCAGTAACTTTTTTTGTGTATGTACTTAGCTGTACTATAAGTAGTTGGTTTGTATGAGATGGTTAAAAAGGCCAAAGATAAAAGGTTTC--TTTTTTTCCTTTTTTGTCTATGAAGTTGCTGTTTATTTTTTTTGGCCTGTTTGATGTATGTGTGAAACAATGTTGTCCAACAATAAACCGGAATTTTATTTTGCTGAGTTGTTCTAACA a score=3375 s hg19.chr6_ssto_hap7 1935307 66 + 4928567 gttaaggaagagaagaagaccagcaaatgcaaccacagagtgactagtgaagtagatgaaaactga s canFam2.chr12 3446293 62 + 75515492 gtcatggaggaggagaa----agcacatgtgaccaaggagtgactggtgaagtagatgagaattta a score=11605 s hg19.chr6_ssto_hap7 1935670 248 + 4928567 ctgaaaagtaaggtgacctcaaaggccactgaagaaagtgtttccaggaggaaggaatggtttacttggtcaaatgctgctgatcaaggag---caaagaggtctgagaagttaccattggatttatctgcgttaggccattggtgatcttaatgagcagttttggtgcagcggtgtttggaagcctggatgcagtgggtctt-gtagactgagaagctaggaac-----acagcaagaataagctactcttttaaa s canFam2.chr12 3446355 256 + 75515492 ctcatttggagggtgacctggaaagccagtgaa-aaggtgtttctagtatgaagaaatggcttaccaagtcagatgctactgatcagtgaggtcagaagaggcctaagaggtgaccattgtatttagttccctgaagccactggtgatcctaacaagccttttcagtgcagtagtggatggaagcctggatggagtgggctttaggagattgagaagctaggaagtggagacaacacaaataggccactctttttaa a score=5032 s hg19.chr6_ssto_hap7 1935918 99 + 4928567 tcctgctttaatgggaata--gaaatagagcaagagctggagagtgaagtggatcaaaagag--ttgatcttttgcagatgggagaacaaatagcattagaat s canFam2.chr12 3447031 102 + 75515492 tgctactttaaggggaacaaagaaatagagcaggaactagaggg-aaagtggattaagagagggttgattgttttcagttgggagaaccaacagcataagaat a score=12796 s hg19.chr6_ssto_hap7 1936017 253 + 4928567 gattcagtagagagaaaatattattatgtcagagaaagtggggagaactgttgaagtgatgtcattgaatgggcggcgggggcgttgagatttggttgacaagttagccttggat-aggaacatggacagttaatccattgtaacatgaTTTGATAGatgtgattacagaggaggcataaggacatggatttgagtgctatcttgggctgggggttgggtaaagaaaga--tgacatg--tctaatcttgaaaggcaa s canFam2.chr12 3447324 247 + 75515492 gacttgctagagagaaaatgtgatgatgtcagagtaagtggggtgaattgctgaagcagtatcattgaatgggcaggagggg--tcgggattgggttgacaagttagccttgaattaggagcatggacacttaatccacagcaatatgatttgattgatgtgcttacagaggaggtatgaagacatggtggtgagTGCTACCCTTGA---------GGGTAAAGGAAGGCTTGATTTAAATTTAATCTTGAAAGTGAA a score=3914 s hg19.chr6_ssto_hap7 1936270 76 + 4928567 gtgtttgtcaggtggacaaaag-------gctaaagtgcatttcatgtagaggaacaggcatgagcaaaggcagaaaggtatt s canFam2.chr12 3447766 83 + 75515492 GTGAATATCATGGGGACAGAAGTGGGCAGACTAAAATGCATTTCATACAGAGGAACTAGCATGAACAAAAACAGATGGGTATT a score=7412 s hg19.chr6_ssto_hap7 1936672 187 + 4928567 ccacctttcaggacactacaagcagtgtggtgtggttggagtgctgggcatgtgcttgttggggggtgggggtgatgaggatgggctggtagacaTTACAACAAGGTCAAGGCAAGGGATAGGCAGGGTCT-------------------TCCTACAGTATATTTTTCCATTAAGAGGCAACAGAGAGCAGTGGAAGGAGCACAGt s canFam2.chr12 3447852 195 + 75515492 CTATCTTTTGGGGTATTGCAGGCAGTTTGGTGTGGCAGGAGTGCTGGGCATCTATCTGCTTGTATCTGGAGGAG--GAGGGTGGGGGGCTA--------AACAGGGTTAAGGCAGGAGATAGGCAGGGTCTATTTATATTTAGAATATCTTCTCCTAGTACATTGTTCGATTAAGAGGCAGTGGAGAACGGTAGA-GGAGCACAGT a score=8993 s hg19.chr6_ssto_hap7 1937197 210 + 4928567 ACATGTAAGGCCAGAGCAGTATAGA-----GTGTAaataataattcacatttcatgggctctatgtggtatctatatgcatcatctcagtggattcttgcacatctttttgaggtaggtactattattaaacctattttgggtttatacaaattaatgacttaaccaaattca-cacagccagtaaatagtagagtccacatttgaacccatagcc s canFam2.chr12 3448296 212 + 75515492 atataAAAGACCAAAGCACTATAAATAATCATGTAAACAATGATTCATGAACTCTGGGTGCCAT----CATCTCcatggatcatctcagttgatccttgtacatctctttgaggtgggtgcttttattgactccatttgaggtttgtacagattagcagcttgtccagactcaacatagctaataagtggtagagcaagaatttaaacccaTTGCC a score=4898 s hg19.chr6_ssto_hap7 1938726 128 + 4928567 AAACTCTTAATGGCTACACTATTTTCCtggctaaaacactgcagctggaatcagaagtctgaaagttgaggcccagccctgccactt-gtagctacttggcattggccaagcgaagccatgtctccaag s canFam2.chr12 3448583 121 + 75515492 CCAGTCTTTATGACTATACTGTATTCCTGACTGCAATGCTACAGCTAgagtcaagagtctggggcttgaggcccagc--tgtcacttcttagctacttgactctggacaggc-----cata-ctccaag a score=1458 s hg19.chr6_ssto_hap7 1938860 36 + 4928567 tttcccccaaccttctttcaaatagtgacttccagg s canFam2.chr12 3448925 36 + 75515492 CTTTTTTGACTCTTCTTTAACATAGTGACTCCAAGg a score=6303 s hg19.chr6_ssto_hap7 1938897 127 + 4928567 ttgtgaaggccaaattaaatgtgaaaatataatgaagTAACTCTAAAATTAATAGTTACTAGTTATCAAAGTAGCATCCTGGCCTCCAGCATGTCTTCCCCTGACTTTCCCCACCCCTTGGAACCCT s canFam2.chr12 3449172 115 + 75515492 TTGTGAAGGCCAAATTGAATGTGATAATATTATAAAATAATTCTAAAAC-----------AGTTATCATAGTGGAACCCTCTCCTCCAGTATGTCTTCCCTTGACAAT-TCCACCCATTTGAACCCT a score=93081 s hg19.chr6_ssto_hap7 1940409 2006 + 4928567 TATTTTGTTTGTTTCATCTTCCAGGTGAACAACTTTGTGATCTTTGAAGGCTTCTTTGCCCATCAACATCGTAAGTTTTTGCATTTTGTT----GGTCACGTAGTCGGGGTGAGGGAAAGGAAAGAGCTGGACTCTTGGTCCTGCCGACCCC-TCACTGAGGGGCCCCGCCGCTTCCTTCCTCACAGGGCCCCCTGCTCCCTCTCTGAGGGCAACTCGACACTCTCGTGCTGCTGCAGTCGATCCCACGCCCGCTGGTAAAGCCTGTATTGAAGGGGTGGAACTGTAGTGCAGTGATGGCTACTTACTCTAGATGCCACGGGG--TACAGTGCCATCTGTGGGCAATTTTGGAAAATTCTAAAGCAACCCAAGTCTCCAGCAGTCATGACT-GTTTGCCTTTGCCCTCATGGGAGCTCAGTGCATTTTATATTTGGCAAGACTTTTAACTAAGCAAGCTCATTGGGAGCCTGTTTGACAGCTGATATCAATGGACCCTCTTGCCAGTTCAGGTCCGTCAACATAGGCCAGAGTCAGGCTCCTTTGTAAACCCC--AGGCTTCTGTTAGCCAGTGAGGGACAGGCTGGTGCAAACAGCCCTTCCATTTGCAGTCACAGAATAGTGACACAAATGGCCCAAAATTTAAATGTTACTTTTAGAAGATAACACTCAGAGTTTATAACATTTCCAACCAGATAATGAAATTGATATGGAGAAACCAAACCTCAGAGGCACTAAAATGCTGTCCAGATTCCCCATCCcatatacacacacacacacacacacacacacacaaacacacTTACTGACAGTCTGAGCCCCACTCCTTCCTCTTCCTCACCACCTCCACCTTACCAACTTCTGACAGCTGTACAGTGCTTGCTTGCACAGAAGAGCCCCCTTCCTGAGCTGGCTCTGTGGC----------------------CAGGAAAGGATGTAACCACCATCCAAACAGCAGTCTGTAACCAGCTATGAGCAT--CACAGTGTCAGGCACTGAGAGGCACCTCA--------ACTCGCTTTGGTTTCCAAGGCTTCTCCCATTTAGCTTGTTCAGAACCACAGGCTGTGAGAGGGACTGAGGGCCAACAAGGATGGTGAGGTCTCAGGCCTGCAGGGGAG-GGTGCTGTGGATAAAGCTTAAGTGA-ATTTGCTGAGAAGTCTTTCATTTGCCACACATACATGATGGAGAATCTCTTGAGAGGGAAA-GCCGGGAGCAAGTAGAGAAGTGAGGAGG-GGGAGGCTGAACTTTGGACATTACATCAGCCTCCTGCTTACTCTGATAGCTCCCTTTCAGATGCCCATATTTATTTTCTTTTTTTTTTTTAACCTAATAAAACTTCAGTCTCTTCCCATTTTCGTATAGGAAGGAGAGATTGTGCCCTCCTTCCAAACCTCCCCTGACCTCTCCAGAGCAATTCCTGATTAACCAAGGGCTTTGTCCATCTCATCCAGAGGAACCCAGGGTCCTCGTTGGCCCGGCTGGGACCATTCCACTGCCCCAGAATACCAGGGGGCCATGACAGCACCCACTGACAGTAAGAGCTCACTTCCCTTGGCTGCCCTTCTCCTGCATCTCCCAGGCCCCCAGAGTCTCCCCTTCGATCTTTCTCCCTAGCTCTGTGTTTGGCCTACTCCTTCTGGCTTTCCTCAACAGTGTTCCA-CATTCCCCTCAAATTCCCTTTTGGTGTGCTGGCATTGCCATGGTGCTGCTCCTGCAAG------------------TTCTCAGGAGGAACTGTGGTGTCAGGGAGCAGAGGTTTGGGGTTGGGGTATAGTGGCTGGGAGGAGGGGTGCAAAGTATGTCTCCTAACGCTTACCCTGCCTATGTCCCCTCCACTGCCAGCTCCAGCAAGGAAGCTGCCACCCAAGAGAGCAGAGGGAGACATCAAGCCATACTCCTCTAGTGACCGAGAATGTAAGAGGGGCAAGGGTCGGGTGTCTG---GGCCTGGGGTACCTTAACACAAGGGAAGAGAATGCTCAGGGGACCCAGGGAAAGGATTCGTTCTCTCTAAAGACTCAGATTTCT s canFam2.chr12 3451937 1934 + 75515492 TATTTCACTTCTTTCATTTTATAGGTCAACAACTTTGTGATCTTCGAAGGCTTCTTTGCCCATCAGCATCGTAAGTTTTGTCACCTTGTGTGTGGGCCAAGTAGCTGGGGTGACGGGAAGGAAAGAGGTGGATTCTTGATGCCACTGGCCCCCTCACTGAGGGGCACCACCACTTCCTTCCTCACAGGGCCCCCTGCTCCCTCCCTGAGGGCATCTCGACACTCTCGTGCTGCTGCGGTTGATCCTACACCCCCTGGTAAAGC-TGCAGTGAGTGGGTGGAATTGTAGGGCCATGGTGGCTAGTTCCTCTGGAGACCACAGGGAGCACAGTGCGAT-TGTGGTCAGTTTAGGAGAATTCT----------------CTGGCAGTCATTACCCATCTGCCTTTGCTCTCATGA---CTTAGTACATCTTAGGCTTGTCAGAACTTTTAACTAAGCAAGCTCATTGGGAGCCTGTTTGATGATCGATATTCATAGAGTCTCTTGTCGCTGCAGGTCCATTACAAGAGACCAGAGTCACATTTCTTGGCGGACCCCTTGGGTTTCCGTCCGTCATTGAGGGACAGACAAGTGCAAGCAGCCCTTCTATTTCTAGTCACAGAATAGTGACACACGTGGTCCAAAGTTGAAAT---AGTTTTAGAAAATA-TGCTCACATTGTACACTATTTCCAACCAAATAATGAAATTGATCTGAAGAAACTAA-CCGAGGAGGTGCTGAGATGTCGTGCAGGCTCCCCATTCCATCCTCATACACACACACTC-------------------CCTA-TGGGAGTCTGAGAGCCACTCCTTCCTC------ACTGCCTCCCACAGATAGA-----GAAAGC---ACAGTG------TGCACAGTTGTGCTCCCTCGCTGAGCTGGCTCTGTGGCTAGCTCTCCCCTCCTCTGTGGCCAGGAAGGGGAGTAGCCACC-CCCAGAGAACAATCTGTTAC-ATCCATTAGCTTTGCCCAGTGCCAGGCACTGGGAGGCAGCTCATGTCCATGACTGGCTTTGCCTGCCAAGGCTGCCCCCATCCAGCTCCTGCTGC-CTACAGGCTATGAGAGGGAGCGAGA-CCCACGAGACCGGTGAGGTCC-------ACAGGGGAGCGGGGACCAGGGGAAAGCTTAAATGGGATTTGCTGAGAAGTCTCTCGTTTGCCACACACAAA----AGAGAACCTCTTGAGCGGGAAAAGGAGGGAACAACTAGAAAAGGGAGGGGACAGGAAGCAGGGCTTTGGATAATATGTTTGCCTTCCATTTACTCTAAC--------TCTAAATGTC----TTTGTTTTGTCAAATGTTTTT--CTTATTAAAACTTCAATCTTGTCCTATTTTTGCACCGAAGGGCGAGGTTCTGCCCTACCCCAGCCCCCTCCCCAATCTCTCCAGAGCAATTCCTAATTAACCAAGGACTTTGTCCATCTCATCCAGAGGGACCTGGGGTCCTCGTTGGCCCGGCAGGGACCATTGCACTGCCCCAGGATCCCAGGGGGGCCTGACAGCACCCACCAACAGTAAGAGCTTGTCTCC-TTAGCCACCCTTCTCCTGCATCTCCCAAGCCCC-AGAGTCTCCCCCTGAACTT----CCCCAACTCTGCATTTGGCCTACTCCTTCTGGCTCCCCTCAA--GTGCTCCAGCATCTCCCCTGAACTCCCTCTTGGTGTGAAGGCATTGCCACAG--CTGCTTCTGTGATAGAGCTGACCTCTGTCCTTCCCCAGGAGGAACTGTGGTGTCAGGAAGCAGAGGTCTGGGGTCAAGGAGGTGGTGGTGGGAGGAAGGGTGCAAAGTATGTCTCCTGATGCTTACC-TGTGTGTGTCCTCTGCACTGCCAGCTCCAGCAAGAAAGCTGCCACCCAAGAGAGCAGAGGGAGACATTAAGCCATATTCCTCTAGTGACCGAGAATGTAAGA----CTGGGGTAGGGTGGCTGTTGGGCTTGGGGGCCGTTA---------------------------CCCAG---AAGGATTGGTTCTCTCTAAAGGCTCTGGTTTCT a score=109876 s hg19.chr6_ssto_hap7 1942737 2531 + 4928567 CTTTTTTTCTACCAAAACCTTTGCTGTCATGACTCTCTTCCTTTTTTCTTCTTTTTCTGTCTTGCTCTTCATTCTCCCTGTCCCCAGTTCTGAAGGTAGCTGTGGAGCCTCCTTGGCCCCTAAACAGGGCCCCTCGCCGCGCCACACCTCCAGCCCACCCACCCCCCCGCTCCAGCAGCCTGGGAAACTCACCAGAACGAGGTCCCCTCCGCCCCTTTGTGCCAGAGCAGGAGCTGCTGCGTTCCTTGCGCCTCTGCCCCCCACACCCTACCGCCCGCCTTCTGTTGGCTGCTGACCCTGGGGGCAGCCCAGCTCAACGTCGTCGCACCAGGTAATAGGAGTTGAAGGGCTAAGGAGCCTCACAGCTATA--AAAGAGGATGTTAGAAATGGCAAAGGGCAATTTGAATCCATCAGAGAGATGGATCAATAAGATGGGTGGCTTGGGGGGGGTCCTGAAACCTTTCAAGAAAAATAT-TTGTGCAAG------TGATCTGGGAAAAAAATGCAGTGAAGGAGCAGAATAGGACCTTATATGGAGCCTAGG---GACCCTGGCTTT-AATGTGAGAGTTATGTGGAATGGTAGGAAGAACACCGAGATCCATCGAGTTGGGGGAACAGAGCCTTCTAAGATTGGGAAAATCTTCGCTTAATACTTGCTGGGGAA-GGGGCAGTGTCTGACAGAGAGTGGGAA-----------GCCACTGGCTTGTGTGCCAAGAGTCCATCGCAGCAGGCAGGGAGTGGGCATTTCCTTTATTTctctccct----ttctcttcacctctgacttctct-----gtttttctctcccccgccccccgccatttcccatctcccttcctcccATCCATAACATCCTTCCACAGCTCCCTTCCCCGCTCTGAGGAGAGTCGATACTAACAGCTA----CCCTCTCCCTGCCCTGGGAGACCTGGGGTGGGCAGGGAACCC-CTCCCTGAGAACCTCAGACCCACTCTTCCATTGCATCCTGTAGGACCCAGTGGAACCTGACAGAGCCCATAGGATTCCCTCTTCTACTTTCTTAGACAGCAGGGATGTCAGGGTCTCAAACTGCCTAACACTTTGTAGCTTTTCTTAACACA-AAAGCACCCCTTCTCTCCTAACTTGGGCTCTGAATACTTTCCCAACAGGAAGTCTGATCTGTTGCCAGACTTCTTGGTTAGATGGCTCATAC-ATTTATCTAGAGAAGCACACTCTTGCTTGCTGTCAAACTTTAGAACACCATGGAAGGTCTAAGGGCATCCTGTGCCAGGGAAACTTTTTAAGGAATTTTATCTATGGGATAAACCCCATATTCCCTCTA--GTGTCTACTGGTGGCTCTAATACTGCTTTGTGCTGCCTGCCACACTTGCCCTTTGAG-CCTGCGAATGGCCGCTAGTGAGCAAGCTCTGCTTCAGAGCAGTCTAGTTAGGTAGAACAGGGACTTACCAGCTTCCCAAAGGGATCTACTCACCATTGCCAAACTCTTCATTTCCACATTTTGTGTAGGTGTCAGGGAACCCC-AAACTGGTGT-TGCTTTGGGGTCTCTAAAGG--------AGATTGGCTGACACCACCATTTCCCCCAGATCCAGATTCTCTGAGGGAGGTTGTTTCTTGAGAGTAGATCCA-----------------------------------------------GAGTGTCAAGGATCTGTTAGATCCTGGAATCCC----TTCTTGCATCCATCCCTCCCTGGTAGCTAGGTCCCGATATACTCCTGTCTTGTGAGATTGTCGAGATGAGATGGGGGACCACTCTTCCTCTGTCCTTCCTCTCTCCTTTCCTCCATAGCAAGGACGACCTTCCCTGCTCCATGCCCAGAGTATAGCTAGATCCCTTCCCCTCCCTACCCTCTGAATGTGTGCTAGATCAGGTGCCCCACTGTGTTTCCTGA----AATCCTTGGGAGCCGGATCTCCCCATCTCCCCTACTCACTCTTCCCTTTTCTTCTCTCAGTGTTGTCTGAATAAAGTGTGAAATCTTTTGTGTTTTCTAAATTGACATTTTCAATGAAAAAAAGAATCACAAAAA----AAAA---AGTTGTCAGCCTCATTTGTGCGTCATCCCTTATTTTCCTGGGATCTCAGGACCTCTGTCCCTCTCATTTCTCACTTCTGAGATCTGCACATCTTTTACCCAGGAGCCTCAGAGCTCCTGAGTCTGGTGTCTGCCTATCCCCATCTTCACTGTTAGTCCTCCTGCAGATTCTGTGTCTCCTTTCATGTAGGTGCTGGATCCCTGTGTGTGGGCTTCCGTATCTACTCCCTCATTCCCTCCAGGAACCTCCAGCTCTCCCC-AGTGACTTCTACCCTTTACTCTGGGCGTGCCTTTGCCAAGATGTCAAAGCTTACCAACATCTCTGG-ATCCACTAATTACCTCCTGCCTCCTGTATTCGTCTTCCCACTCTGATTACCTGACGTCTGCTCCACTAAACCGCTGGATCTCTCTCAAGACAAACCCTTACCTCCATTGAGAGTGCAACACAGTCTGTCACCCTATTTACAGAGGCCCCCTTCCTTTTCCTCCTAAATTCAAAATTCAGCCTTGTCACTTCCTATTTCCCTCTGGTCT s canFam2.chr12 3453871 2416 + 75515492 CTTTTTTTCTACCCAAATCTTTGCTATC-----TCTTCTCTCTCCTTTTCCTTTCTCCGTCTTGCTCTGTATATTCCCTCCTGCCAGTTCTGAAGGTAGCTGTGGAGCCTCCTTGGCCCCTGAACAGAGCCCCTCGCCGAGCTACGCCTCCAGCCCACCCACCCCCTCGCTCCAGCAGCCTGGGAAGCTCCCCAGAGCGGGGTCCCCTCCGCCCCTTTGTGCCAGAGCAGGACTTGCTGCGTTCCCTGCGCCTCTGCCCCCCACACCCTACTGCTCGCCTTCTGCTTGCTACTGATCCTGGGGGCAGCCCAGCCCAACGTCGCCGCACCAGGTAAGAAGAGCTGGAGGGTCAGGGAGCCTCAGAACTGTGTCAAAGAGGGTGTTAGCAATGGCAAAGGGCAGTGTGAGTCTACCATAGAGGAGAAGTGATAGGACAGGCGGATTGGAGAG--TCCCGGAACCTTTTGAGAAGAATATATTGGACCAGATTTTGGGAGCTGGAAATAAAGTACA-TGAAGGAGTAGAATAGTATTTTATATGGAGTGTAGGAGGGACTCTGGTTTTTAAAGCAAGAGATGGGAGGAAGGCTAGGAAGTACA----GATCCATTGGGTGGGGAGAACAG-----TCTCCAATTGGGGAGGTCTTGGTTCAGTACTTACTGGTGAGCTGTGGGGTCTCTGGCAGTTCGGGGAACCCTGGCCTCTTGTCAGTGCTTTGTATAGCAGG-GCCTGTCCTAGC------GGAGTGGGCACCTCCTTGATTTctctccctagctctctcttcacctctgacttctcttttgtgtttttctctctccc----------cttatccctctcccttcc---cgtccataacacccttccccagctcccttccccgctcAGAGGAGAGTCGATACTGACAGTTAGTGGCCCCCTCCCTG------GACACCTGGGCCAGGCAGAGTCCCCTCTCCCTGAGAACCCCAGATTCACTCTTCCATTATAGTCC-CAGGTTCCAGGGGAACCTGACAGAGCTTGTAGGATTCCCTTTTCCTCTTTCTTGGGCAAAGGTGTTGTCAGGGTCCCAGATGGCTTAGTACGTTGTAGCTCTTCTTCCTGTAGAAACCACGCTTCCTTTCCTAA-GTGGGCTCTGCACACTCCCACAGACAGGAGCCTGACTCGCTGCCAGATCCCTTGGTTGGGTGGCTCATACTAATTATCCAGAGAAGCACACTCTTGCTTACTGTTAGACTCCAGAATACACTGGAAGGCCCAAGGGCCTCCTCTTCCAGGGAAACCCAT-AAGGAGTCTTGTCCATGGAA-AAATCCCACGGTCCTTCTACAGTGT-TCCTGCTGGCTCT--CACTGCTTTGTGCTGCCTCCCACACTTAACCTTCGAGGCCTGCAGAAGCCGACCAATGAGC----TTTGCCTCAGAGCTGTTCAGTGATAAAGGACAGGGTCTTACCAGCTCCCCAAAGGGATCCACTCAACATTGCCAAACTCTT-ACTCTCATGTTTTGCATATGTGTCTGGGAACCCCCAAGCTGATGTCTGCTTTGGGG-CTCTAAAGACTCCGCACACTTCTAAAGATACCACTACTTCCCCCAGCTCCAGATTCTGTGAGGGAGTTCGTTTCTTGGCAGTGGACCCACCGAGTACCCTGGGGTCACTCTTAACCATGTTCAGAAGACAAGCCCTGAGTCTCAAGTATCTGTTAGCTCCCAGGAACCCACCCCTCTTGCATACACCTCTCCCCA-TAGCTAGAT---GGTATTTTCCAGTCTTGTGAGATTATCTTGAGGTAATGGGAGA--ATTCTTCCTCTAT----------TCCTTTCCTCTATACCAAGAAC---CTTCCCTGCTCCATACCCAGGGTGTGGA-ATACCCTTCCCCCTCCCTACTCCTTGAATGTGTGGTAGTTCAGGTACCCT-CAGTGTTCCCCCATCCCAGTACTTGGGAGCAGGATCTCCCTCTCTCTCA-ACTC--CTTTTCCTTCTCTTTTTTCAGTGTTGTCTGAATACAGTGTGCATTCTTTTGTGTTTTTTAAATGGACATTTTCAATGAAAAAAA-AATCAAAAAAATCCTAAACTTCAGGTCTCAGCCTCGTTTGTGTGTCACCTGTTCTTTTCCTGGGATCCCTGGACCTGTCTCTATTCTCTTCCTTACCATTGTGATCTGC-----------------------------------------------------------------TGGATGTTCTGCAGATTCTGT--CTCCTATCATATAGTCACTGGATACCTC------AGCTTCTAGATCTACACCCCCATTCCCTCCAGAAACCTCCAGTTCTCCCCCAGTGACTTCTGCCCTTTAGCCTCGGCCAGCCATTGCCAAAATATCAAGATCTACCAACATCCCTGGGATCCACTCATTGCCT----------GAATTCCTCTTCCCGTTCTGATTTCCTGCCCTTTCCCCCAG-----CCTTGGACCTCTCCCAAGACAA---------------------------------------------------------TTCCTTTTCCTCCTGAATTCA-------GCCTGGTCACTCCCTACTTCCCTCTGGTCT a score=5659 s hg19.chr6_ssto_hap7 1945572 132 + 4928567 GTCTAAGGAATCTTATAGTTAAGGTAACCCTGTTTTCCAAACCAAACACCAGAGTACCCGATCCAACACATTTTT--GACCACATGTGAGTCTGTTCTTCTGACATGATTTGGATCACACCTAGCCATAGATTT s canFam2.chr12 3456287 130 + 75515492 GCC----GTGTCCTGTAACTAAAGTCATCAGGTTTTCTAAACCAAACACCAAGGCACCTAGTCCAACAAATTTTTTTGCCTATATAGGAGTCTGGTTTTCTGACATAACTTCGATCACATTTAGCCTTACTTTT a score=111638 s hg19.chr6_ssto_hap7 1945704 2751 + 4928567 AACACATTACCTCAACTAGAAAGAATAGAGCAATAAATCAGAAGCACTCCAGAAAATCTTGGG-TATAAAATGAACTTCCCCCGCCCTTTTCTGGGGCACAGCTTTGATTAAAACCTGTTAGGAATGATAATTACCCCCTTCTCTTTGTTCCTGTGCTATTCCTTTTACTCCTCTCCTCTGATTCCTCCATACCCACCCATCTTTCATCCAGTAGCCTCCTCCCCATCATCTCCCATTTCTTCTACAGGGGGACTCCCCCAGGTCTGGTAGCCCAAAGCTGCTGCTACAGCCGCCATGGGGGGGTGAATTCCTCATCCCCCAATACAGGTAAGTATTCACTCCTCCCTACCCTCAAATCAAGTAGGCCACATTCACTGTCTACTCCTGCCTTCCCATTCACATGCCTGATATTTCCACAGGCAACCAAGACTCCAAGCAGGGAGAACAGGAAACAAAGAATAGGTGAGGTCTAAACCCCTCCCCTAACAGCCTCCCACCACCATCTGACTCCCTT-CCTAACATCATTCTCAGTCACTTCCTACTCTTAAATCTTATTGTATGAACTGGACACCAGCTCCTCCCACAATTCCTTCTACCTTACATCCTGCAAGCCCCTTTCCCCCACAGGTTCAACTCTGGTACTTCCCTTTGGAATACGGATTCTCTGAGAGG-TTTTAAATTTGGACATAGCACTAATGGTTCCAGCTTCATACCCATCATGTGTCCTACATTAAAACCTGGCCCGAGACCTTGAAGAGTCTGTAATCTTAATTTCCTCTTTAGTATTCCTATAACCCACTCTCCATCTCCC---CACCTACCAGGTCTGCCAGTGAGGAGCAGGCCTTGTCACAGGATGGGTCTGGGGAGAAGCCCATGCACACAGCTCCTCCACAGGCCCCGGCCCCGCCAGCCCAGTCCTGGACAGTGGGTGGGGACATACTCAACGCCAGGTTCATTCGAAACCTGCAGGAACGTCGCAGCACCAGGCCTTGGTGACCGCAGCCC------CGTCAA-----ACATCTTCAAAGT-ATTATTTCTCCCTCACTACAGGAAAGAGCCAAAGCCCAACCCTCATAATAGATGGATAcattc---attcattcattcattcaGCAGGCTTATCAGATTCAAGTCATTTGTATCTT--------TTAACCAGACCAATAAAAGTATTTATTTTTATCACAAGAGCTGTTGAAAAATTTGACT--CATTATTTCAGCCGCCTCACCCCTCACTGTCGTTGCACCCATTCAGCCTTCAGCCCTGTTTTTGCTCAGCTTTTTGC-TCAAAGGCCTCAGCTGTGAATACAGCGCTTGGGGGGGCGGGGGAGGCTGTAACTTGCGCAAGCGCACTCAGGCAGTCTCCG-AGCCCGCGGGCGCAGGCGCGCTTACAGCCGACAGAGCGCTTCAGCCGCTTCCCTCGAGCC---TGCAGTGCGCAAGCGCGGGACAtctccgtttccctccct-cagccccttccccccctacccccccgccccggcctcctttcccCTTCACGAAGCCGGCTCTGGGGCGCGCTCACCCCTGTGAGGAGGCCGGAGGTCGGACTCAGGAGGCTCCTTCTCCACTCCCGGAAGATCATGTACCAGCCCAGCCGGGGTGCGGCCCGGCGTCTCGGCCCTTGCCTGCGCGCCTACCAGGCTCGACCCCAGGTGAGCGGAGGAGAAGAGGGAGGGAGGAGAGGGGGCGGGGAGAGACCCTCCTCAAAGCCGGTGCGTGGGGCGGAGCGCGCGCTGGGTTCCGCGCAGGCGCAGAGACACCC-GCCGCCCCTTCCCACCTGTGCCCTGCAGCGCGTGGACAGGCTAGGGGTCGCGGGAGCGG----GAGGGAGGCGCTGCCGGGCCTGTCGCGCA-AGGACGTCGGTCCTCCCAGGTTTGAGGGCGGTCAGGCGGGGTCAAGGCCAGGCAGCGGGGCGCGTCTGCGTTGCGCCCGACTCTCCGCGGTTACCTGTGCCTAGAGGTGATTTGAAGGGCA-GGGGCCGAGAGATTCGTAGCCCTGCTGCGGCGCCGTCCCGGAGTTCCCCGGCCCAGACCAGACCCGCGGGGCGCCCTCAGCAGCCCGCCCGTCTTGCACTCGGAGAGCGGTCCTGGCAGGAAGGCCGGCCAGTGTGCACCCGG---TTCGGGCCC-CTGCGCCCGGGCTGGCAAGATGGCCACGCCCCCAGCAGAGACGGCGCCTCTAGGACACCATCGGGGACCGAGGTACCCGAGCGGTCCGCCCGCCTTCCCTGCAGTGAGACGATCCCCTGGGGGGTTCCTTGGGAGCGGAGGGACTCGGGTGAGGCCTAACTTTGGGTGACCTCCC----CTTGCAGTTTCAACGTCGGTAAACCCAGGAGAGTGAAGGCCAGCCTTTAACTGTCTCCTGAGGTTGTGTCTGTCATTAGAGGGGCCCGAaatgataatagcttccatttatgtactgctttctaggtcgctacgttttgtttacattcattatttcatataggcctc---ataacccagtgaggctttattgttctcattt-ataggacatttgtag------------------gaagcggag----gcatagggaatgagaatgcctaaagttacaTGATAGAAT------TCAGA-------TTCCTAGCTTCAGCTGGATATTCTTTTTTCTCTGTACATTTGCCTCGCACACTTAATCATGGAGATGT-ACAGGCCACAGCATTTAATCCACAGTACAATAAAACCTGTTATTCGTTAACTCATCAAG-TATGTATTACATGATTCTTGCGATAAGAGAGGTGAAACTGCCCCCA----GTGTTGGAAt s canFam2.chr12 3456594 2628 + 75515492 AACACAGTACCTCAACTAGAACTAATAC--CAACAAACCAGGACTGCTCCAGAAAATCTTGGGGTATAAAATGAGCTCCCTCC--CCTTTTCTGAGGCACAGCTTACATTAAAAGTAGTTAT---------TTACCCTTCTCTCTCT---CCTGTACTATTTCTTCCATTCCTCTCCTCTGATTCCTCCATACCCACTCATCTTTGTTCCTATGGCCTCTACCCCATCATCTCCCATTGTTTCTACAGGGGGGCTCCCCCAGGGCTGGTAGCCCAAAGCTGCTGCTACAGCCGCCATGGGGGGTTGAGTTCCTCATCCCCCAATATAGGTAAGTATTCTTCCCTCCTG---CTCAAAAAGGGTACGCCACATTCACTACCTACTCCAGCCTTCCCATGCACATGCCTGGTGTTTCCATAGGCCACCAGGAATCGAAGCAGGGGGAACAGGAAACAGAGAATAGGTGAGGTCCGAGCCCCTCCTCTGCCAGCCTCCCACCATC-TCTGACTCCTTTTCCTAACATC--TCTCAGCTACTTTCCCC--------------------ACTGAACACCAGCTCTTCCCACAAATTGTTCTACCTAACATCCTA-AAACCCTCTTTCCCCGTGGGTTC-------GTGCTTACCTTTAG--CACGA----TCTGAGGGGGTTTCAAATTTGTACCTAGCACTAATGGTTTCAGCCCACAGTCCATCTTAAGCCCTACTCTACATCAGGACC--AGACCTTGAAGAGTCC----TCTGCACTGCTACTCTAGTAGCCCCATTACCCACTGTTCATCTCCCTCCCGCCTACTAGGTCTGCCGGCCAGGAGCAGGGCTTGTCCCAGGCTGGGTCTGGGGAGGAAGCCACGCACCCTGTTCCCCGAGAGACCC---------------AGTCCTGGACAATGGGTGGGGACATACTCAACGCCAGGTTCATTCGAAACTTGCAGGACCGCCGCAGCACCAGGCCTTGGTGACCACAGCCCGCCCCCCCCCAACACACACACCTTCAAAGTCAGTATTT-----TCACTACAGGAGGTAGCCCAAGCC-GTTCCTCCAAATGGATGTATTCCTTCTAACTTCCTTCCTTCCTTCCATGGGCTAATCAATGCCAAGTCATTTGtattttattttatttttaacagaataataaaagtatttatttttatCACGAGAGCTGCTGGAAAAGCGTATTGTCATGATTTCAATCCGGTCACTCGCTTCC--CGGAGTACCCG------CTTCCGGTCCGTTAGGCCCCAGCTTGGTGCGTGAGCGGCGCCAGCGA-------GGCGGCCGTGTGCGCCAGGACGTTGGTCTACTGCGCAAGCGCTGTGAGGCAGCCGCCACAGCCGGCGAGCGCAGGCGCACTCACTGCGGACGGAGGCCCTC-GCCGCCTCTCTGGAGCCCGCTGCAGTGCGCAAGCGCGCACCATCTCCGTTTCCCTCCCTTCAGCCCCTCCACCCCC--------------------CCTTCCCCTTCAAGAAGCCGGCTCCGGGGCGCGGTCAACCCTGTGAGGAGGCCAGAGGCCGGACACCGGAGGCGCAGTCTCCGCTCCCGGAAGATCATGTACCAGCCCACCCGGGGGGCGGCCCGGCGTCTCGGCCCCTGCCTCCGTGCCTACCAGGCTCGACCCCAGGTGAG---GGCAGAGAGGATCgggaggggaggggaggggaggggaCCCTCCTCAGAGCCGGCGCGGGGGGCGGAGCGTGCGCCTCGT-CCGCGCAGGCGCAGCAGCGTCCTGCTGCCGCTTTTCGCCTGTGCTGGGCGGCGCG-GGAGGGGCGCGGGGTCGCTGGCGGGGACCCGAAGGCTGCGCAGCCAGCCGTGGGGTGCACGGGATGTGGGTTTTCCCGGGTCTG--------------------------GGCGGCGGGACGCGACTGCATTTCGCCCGCGTTCCCGCGGTTACCTGGCCCCGGAGGTGACTTGAAGGACAAGGGGCGGAGAGGTTCGCAGCCTGACCGCGGAGCCGCCCCGGAATTCTCAGGGCCGGACCAGACAGACG----------AGTGGGCCGCGAGTCTTCCATTGGGATAGCCGTCGCC-CGGGAAGGCTGGCCTGGGGGTGGCCGAAGATTCGCTCCCGCCGAGGCCCGGCGGGCACAGGGGCCACGCCCCCCGCG-------------TTGGCTGCCCTCGGGCGCCCAGGTGCGCGCGTG-CGGGCCAGCCTCCCCGGAAGTGGGAC---CCCCAGGGG---CCCTTGAGGGAGCAAGGACTCGTCT-AGGCCCGACTGTAGGTGACCTCCCGCGCATCGCACTTCCAACCTTC---------------------CCTGCCTCTAACGGTCTCCTAGG--CGTGTGTGTCGTTAGAGGGGCCCGAAACGATCGTAGCCTGCATGTACGTACCACTTTATAGACGACGAAATTTTATCTACGTTTATCATGTCGTATAGTTCTCGTAATAACTCAGTATGGCTGCATCGTCTTCGTTTTagaagagataagcaaaaaaaaaaaaaagaagaagaagaagagataagCATAGGGCATGAGGGTGCCCAAGATGTCACAGTGGAATCGGAGCTCAGAGAAATGCCTCCTGCGTACAGTTGGATGTT---TTTTCTCTAT----------CGCACACTCCATGCTGAAGTTGTTACAGGCAACGTGATTTCATCCACAGTACACTAAAGCCTGTTGCTTGTTCATTTTTCAAAATACGTATTA--GGATTCTTTCTGTAAGAGAATCGGAACTGCCCCCAAACAGTGTTGGGAT a score=1403 s hg19.chr6_ssto_hap7 1949084 46 + 4928567 TGTCTGCTA--GGTTTTGGGAGGTGCCGGTATTTATGTCACATAAAAC s canFam2.chr12 3459237 48 + 75515492 GGTCTACTAACGTTTTGGGGAACTACTTGAACCTATGTCATAGGAAAC a score=43554 s hg19.chr6_ssto_hap7 1949439 718 + 4928567 TGGTTTCCTCCTGTTTTCAGTAGAGATGGAGATGAATCCATCCCTTTTTTCCTATAGTAATTCCATCCATTCTGTCAGGAGGAATAGGT---ATTGGAAGCCTGTT------GAGCATCCAGGGGATCAAGGGGTGTTAGACAAGTGGATTCTTATCTTTCTCCCTTCTGTTCTTTCTCCTTAGGACCAGCTTTATCCAGGGACTCTACCATTCCCACCCCTTTGGCCCCACTCCACGACAACCACTTCCCCATCTTCTCCTCTATTCTGGTCTCCCCTGCCCCCACGCCTTCCCACCCAGCGTCTTCCCCAGGTTCCCCCACTACCTCTCCCTCAGATCCAGGCCCTCAGCTCAGCATGGGTGGTTCTCCCTCCAGGAAAGGGGGAGGAGGGACCAGGACCTGAGTTGCATAGCGGCTGCCTGGATGGGCTTAGAAGCCTTTTTGAGGGACCTCCCTGCCCCTATCCTGGGGCTTGGATACCTTTCCAAGTCCCTGGAACTGCCCACCCTTCCCCTGCCACCCCGTCAGGAGATCCTAGTATGGAGGAACATCTGTCTGTCATGTATGAGAGACTGAGACAAGAGGTAAGTCAGTGCAAAAGTGGCCTTCGTCTACAGTGGGAA-GGATGTGGGTAATCCTTGGACGTACAGGGATAGTCAACTGGATTCTTTTTTGGAACCATGAGGCAGGCATAGAAATATA--TTATAAACATTTTCCTGAGAAAA s canFam2.chr12 3459285 713 + 75515492 TCTTTTCCTCCTGTTTTCAGTAGAGATGAAGATGAATTCATCCCATTTTCCTC----TAATTTCATC--TCTTGTCAGGAGGAGCAGGTGGGATTAGAAACACATCAATGAAGGGAGTTTAGATGA--GGGGGACATCAGGCAGCTAGATTCTTATCTTTTTTCCTTTTATT-TTTCCCCTTAGGACCAGCTGTCTCCACGGGCTTTACCATTCCCACCCCTCTGGCCCCACTCCACAACAAC---TTCTCCATCTTCTCTT---GTCTGGTCTCTACCGCCCCCACTCTCTCCCATTTGGCTGCTTCCTGGAGCTCCCCCACTACCTCTCCCTCAGATCCAGGCTTTCAGCTCACCATGGGTGGTTCTCCCTCCAGGAAAGGGGGAGGAGGGACCAGGACCTGAAATGCATAGTGGCTGCCTGGATGGGCTTAGGAGCCTATTTGAGGGACCTCCCTGCCCCTGTCCTGGGGCTTTGATACCTTTCCAAGCCCCTGGGACCGCTCGCCCTTCCCCTGCCACTCCATCAGGAGATCCGAGTATGGAGGAGCACCTGGCTGTCATGTATGAGAGACTCAGACAAGAGGTAAGTCAGCTTGAAAGTGGCCTTCATCCACATTGAGAAGGGATGTAGGTAATACTTGGAAATAGAGTGTTAGTCAACTGGGT--TTTCTTGGAATTACGAGGTAAGGATATATATATATGTTATAAACATTTCCTAAGGAAAA a score=5152 s hg19.chr6_ssto_hap7 1950467 93 + 4928567 GATGTTCCTCATTTTGGG-TTAAGGGAGGTTAATCATGGGATGAGAT---CTTTCACTCCAAGATGGGAGTAAGGAGGCCTTAAAAATAGAAAACTG s canFam2.chr12 3459998 95 + 75515492 GATGTTCTTCAGTTTGGATTTAAGGGAAGTTAAACATGGGATGAGATGACCTTTTACTC--AGAGGAGAGTAAAGAAGCATCAAAAAGAGAAAACTG a score=36959 s hg19.chr6_ssto_hap7 1950999 550 + 4928567 TAGGATTATCTTTTCTTTCCCACT-GGGTTGATGCCATCTTCTTCCACCTAGCTTCCCAAGCTCTTCCTTCAGTCCCACGACTACAGTCTGTATTCCTTGGATGTGGAATTCATCAATGAGATCCTCAACATACGTACCAAGTGAGAATTGGGGCACAGGTAGGGCACTGGGGAGGAAAAGCACCCAAAGGTATATACATGACCCTTTTCACTTCCCAGAGAAGTTCCTAGACTGCTTCTCACAGCTGTTCCCCATTCCTTAGAAGCCAGTTTGGTTTTCTAATTCTGCCATCATGAGATTTCTTTCCCATCCCTTCTTCACAGGGGCCGGACATGGTACATTCTTTCACTGACCCTCTGCCGTTTCCTGGCCTGGAATTATTTTGCACACCTTCGTTTGGAGGTTTTACAGCTGACCCGCCACCCTGAGAACTGGACCCTGCAAGCCCGGTGGCGGCTTGTGGGGCTGCCCGTCCACTTGCTCTTTTTGCGGTTCTACAAGCGTGACAAAGACGAGCATTACCGGTAAGAGAGAAATGAGAAAGGACCCA s canFam2.chr12 3460098 544 + 75515492 TAGCATCATCTTTTCTTTCCTACTGGGGCTGATGCCTTCTTCTTCCACCTAGCTTCCCAATCTCTTCCTTCACTCCCACGACTATACTCTCTACTCATCAGATGTGGAATTCATCAATGAGATCCTGAACATCCGTACCAAGTGAGAATCCAGGCACTGGTAGGGCCTCGGGGAGGAAAAGCACCCTGTGTTTTCTACTTGATCTTTTTCATTGACCAGAGAAGGTCCT--GCCACTTCTCACAACTGTTTCCCATTCCCCAGAGGCCAGTTTGGTTTTCAGATTATGCCATCATGAGCAATCTTTCCCATCTCTTTCT---AGGGGCCGGATGTGGTACATTCTGTCACTGACCCTCTGCCGCTTCCTAGCCTGGAACTATTTTGCACAGCTTCGGTTGGAGGTTCTGCAGCTGACCCGCCACCCAGAGAATTGGACCCTGCAAGCCCGCTGGCGGCTTGTGGGGCTGCCCATCCACCTGCTCTTTTTGCGTTTCTACAAGCGGGACAAGGAAGAGCTTTATCGGTA--AGACAAGTGAGAAAAGATCCA a score=3492 s hg19.chr6_ssto_hap7 1951843 111 + 4928567 TCTAGTCTCCCAGACAACCCTTGACCTATCCTCACTT-GACTGTTTAAGGACAGGGATCCTG-TTTAGTTTATGTTAATGTTAAAAAAAAAATAGAGACTGGGTATATTAGAA s canFam2.chr12 3460678 108 + 75515492 TCTGGTCTTCCAGAGAGTCCTTGATCAACCCTGACTTCGGCCTTTTGAGGACAGGGATTTTGTTTTCATATACTTTAATAT---GGGAGAAATCAAGACT--TTGTGTTAGGA a score=2402 s hg19.chr6_ssto_hap7 1951954 62 + 4928567 AAACCTCTGAGCTTCAGTTTCTTCCTATacagtgcctagcacatggtaggtactcaaatact s canFam2.chr12 3461020 61 + 75515492 AAACCTCT-AGACTCAGTTTATTTGTGTACGTTATATGGCACATAGTAATCATTCAAGTATT a score=46241 s hg19.chr6_ssto_hap7 1952336 869 + 4928567 TACTGAACAAATGAAAAGTCCTGTCTCATATGTTGAGCCTTACAACCT--GGT------------AAATTTCCGCCTGGGAGTAGAATCCCAATAAATTGTTAGACTCAGCCACAAACATTGGATATAAGTTTTTAAACcagcagttcccaaac--tgctgcacagtagaaatgcccaaggatcgttaaaaaatattgacgccaaacactctgatttaattgagacagggcacaacctaagcactgagatgtttgtaagttgcccaggtgatctaatatgtagcagaatttagggactactCGTTTAAACAAATGCTTGAATTCAGCTTTGGGACCAGTCACCTTCTCCCTCAGTAAGCCTCCCTCTATTCC-----CCAGGACCTATGATGCCTACTCCACTTTCTACCTGAATTCCAGTGGCCTCATTTGTCGCCATCGTCTAGATAAAGTGAGTCC-TAGGTAGGGCTGGG-TGGGGTAAA--GGGTAGAACATTTGTGTGCCTCCCCCAACTGGCATTAACCTTTCTCCCTGCAGCTGATGCCTTCACACTCACCTCCAACGCCTGTGAAGAAGCTGCTAGTGGGAGCCCTGGTGGCCCTGGGGCTGTCAGAGCCAGAACCTGACTTAAACCTGTGTTCCAAGCCCTGATCCTTGACCTTGGAGTGGAGGCAGCACTGAAGACTGC------TACGCCCaagagaaggaggtggaggcagccaagaatctcaggagccagcttcctctcctcgtttctctccttCCTTCCTTTCCATCTCATGCTGTGTAAAGCTGCTGTGTAATTTAACTTGTAAATAATAAAGT-TTAACTGACTATATGAGATAGAATTTCACATATCACTTTCTCTAGATCCCAAATGTTCCCACAAGCTTTA s canFam2.chr12 3461081 844 + 75515492 TACTGAAAAAATGAAGAATCCCGTCTAATAAGTTGAGCCTCACAACCTTAGGTGAGTATTTCATAAAATTTCTGGCATGGAAGAGAATCCCAGGAAATTGTTAGGCTCAGCC----------------------CAAACcagtggttctcagactttgcagcatgatgatgtcatctaaggatcttcaaaaaatactggtgccagacattctgatttgagtgggatggggtgcagcctggtcatcagga----ttcgagttctccagatgatctaatatgtagcaaaatttaggaagtactgGTTTAAACAGATGCTTGAATTAAACTTTGGAA-------------CCCTCAGTCAGACTCTCTTTTTCCCTTACACCAGGACCTATGATGCCTATTCCACCTTCTACCTGAATTCCAACGGCCTCATTTGTCGCCATCGCTTAGACAAAGTGAGTCCTTAGGCTGGGTAGGGATGGTGTGAAGGGGGCAGAACGT---------TCCATCAGCTGGCATTAACCTTTGTTCCTGCAGCTGATGCCTTCACACTCAGCCCCAACGCCTGTGAAGAAGCTGCTAGTGGGAGCCCTGGTGGCTCTGGGACTGTCAGAGCCAGAACCCAACTTACACCTCTGTTCCAAGACCTGATCCAGGAAC-TGGAGTGGAGGCAGCACTGAAGACTTTGCTATGTATGCACAAGAGGAGGAGGTGGAGGTGGCCTAGAATCTCAGGAGCCAGCTTCCTCCCTTCTTTT---GCTCTCCTTTTTTGCCATCTCATGCTGTGTAAAGCTGCTGTGTAATTTAAGTTGTAAATAATAAAGTCTTAAGTGAATATATG----AGAATTTC-CGTGTCACATTCTCTGTATCTCAAAAGTTCCCATAAGCTTAg a score=16329 s hg19.chr6_ssto_hap7 1953205 256 + 4928567 TTCCAAAAAT-------AATTTTATTT----AATAGGTATTAAATAATGTATAGAAGGAAAAGGAGCTGGTGTCAGGTTCTGTTTACGTCCTTCTC---TTACCCTAGCTCTTCTCGTGTTTTGCCTATTTTTTTGGGCATTTTCTTAGCATGGGGATCTTCTAGCTCCTTGGCCTTATAATAATGGGGAGCCACCTCCAGAAGCCAACTGCTCTCAATCTCCAGTACCT-----AGGAGAGAGAAAAGATCAATGGAGTTCCCTTCTTTCCAAC s canFam2.chr12 3462043 274 + 75515492 TAATAAAAGTTACCCCAAGCTTTATTCCAAAAGTAGATATTAAATAACGTACAGAAGGAAAAGGAGCTGATGTTGAGTTCGGCTTGCCTCCCCTTCTCTTTATCCTAGCTCTTCCCGTGTCTTGCCTATTTTTTTGGGCATTTTCTTAGAATGGGGATCTTCTAGCTCCTTGGCTTTATAATAATGAGGAGCCACCTCCAGAAGCCAACTGCTTTCAATCTCCAATACCTACAAGAGGAGAGA-AAAAAATCAGTAGGGTTCACCTTTTTCCAAC a score=6213 s hg19.chr6_ssto_hap7 1953781 122 + 4928567 TTATCTTTCCTCTTTGACTGCAGGGCTAGGTGTAAAGGTGCCTGGCTCTATTATTATATACCCAAAGGGCAGATACACCTCTGTATGTTATTCAAGATACCAAATAAGCTATTCCCAAGAAA s canFam2.chr12 3462528 121 + 75515492 GTTTCTTCTACCTTCAACTGTAGGACTAGG-GTAAAGGTGCCAGGCTCTAATACTCTATACCTCAAGGTCAGACACACCTCTACAAGTCCTTCAGGATTCCCAATAAACTATCCCTAAAAAA a score=5281 s hg19.chr6_ssto_hap7 1954209 145 + 4928567 CCTAGAACATAAagactata---ctctgtgagaccagaga------ctgctttgtt---cattatagccccagcacct----------atacagtagccattcaaatatttattgaataagtgTCTAGTTCTCAGATCTTGGAAGATGCTGACACACCTGTTAGAAA s canFam2.chr12 3462649 166 + 75515492 CCTA-ATCATAAagactgtaaagtacactcaggacacagaccacttctgctttgttcaccattctcaccccagtatccttaacacttgagacaataggcattcaaatactccctgaatgagtATGCAGTTCTTGGATCTTAGTAGATGCTGACACATCTGACAGAAA a score=75959 s hg19.chr6_ssto_hap7 1954651 1409 + 4928567 GGATGTCTTTCTATTTTACCCTACC-------------TTCCTCTTTCTGTACCAGTCCCAGCAACTTGAACCTGGGTTCTTAGCTTGCCAGGACACCATCTCTCTACATAGTCTCCACCTGCGTGGGCACAGGATGTTCTCCTCACCTGTCTCATGAACTCTTTGGTGGTCAAGACAAGTTCGTGGTAGAGCAGCCAGCGTGGCTGTTGCTCAAAGAGGGAGGAGTTGGGATGAATGAAGACTGTCTGCTGCTGTTTCACTGTGCGGTAGCCACTCCGAGTCAACCGTGCCGTGTGGTAAAAGTAACCAGCAGTGATGGCCTAAGGAGCGGGCAGGAAAGAAAATCAA-TGGAAAAGGCAGACATCTGGGGACCCTAAGAATGCACTA-CCTTTTTAGTTCAGGCTTCAGGAAAACTAGAGAGGTAAGGAATGCATGAAGAACTTCCCAGGAATGAACCTTCAGTGGTCTGGGGAAGAAAGGGCCCTGGGAGGACACGTCATACACAAGGGGAAGAGGGCATGCTCTCACGCTGGAGGAAATGCTGCATGCCCCCAGAGAAGCTTGCTCCTGGGA---AGGTACTGGGGGTGGAAAGCAGGAGGCTGAAGAAATGCTGACCTTGCGTACACGGATATAGTCCCCCTGGCAGGAACTGAGACCAACTTCCACACGTTCCAAGAGCCCTTCCAGCTGTTCCCGCACATCCCGGGCTCGGCGCATCGATCTGAACTGTACAAAGTTCTCATAGCACCACTGGGAAGAGTAACCACTCTCAGCCCACTGGGAAGACAGTTAAAAAGAAAGGAGAGATAATTAAGTATACAGCAGGACTAAAGTCCCCCA-GTGTCTCTCATTCCCACTCACCCAAGCCCAGTGACCTGTGTGTAAACATTTAGCAGAACCAGGTGGTCACCGCCAGGGAGAAAGAAGTTGACACGGGCATTGTCAGCATGGACGACCTTGTCCTTTGGTCGGTAGAAGATGGAGTTGTTGACAGAGAGCATGGCAGCCACTGTCAGGATCTCCTCTGAACAGCTGTACCTGGGACAGGAAGGGGAAAGCATGA-GTTCAAAGCAAGACACATAGGAACAGATATGGTGGAGTGGGGAGTGATCACTGTGTGATGGATGTTTCCTCATGTGGGGAAGGCTGGTTGGCATAATGGCTACAAAGCAGCCAGCAGATAGATTCTGGCAGCAGC--------TTGGGGGTCAAGGAAGTAGGGGCCATAGATGAAACACAGTCACAAAGGAGGGACATCCATGGAGGCAGGAGCAGGA-AACACCGGGGAATTCTGAGG----------CTTCTGCAGAAAGTGTGCATTCACTATGTGCATTTGGAAAA-----------------------GATCTCTGAC---------AGCAGAGGAATGGCATTTAAAGGTCATCCCTCCACAGCTACATCTAAATGTTCTAGTTGGAAACCTTAGGAACAAG s canFam2.chr12 3462815 1440 + 75515492 CCACGCCTTTCTATTTTATCCTACCTTAAATTAATGTTTTCCTGTTTCTCAGCTAGTCTCAGCAAATTGAAT------------CTTGCTAGTATCCTACCTCCCCACACA-TCCTCACTTTCCTGGGCAAAGGAAGGTCCCCTCACCTGTCTCATGAACTCCTTGGTGGTCAAGACAAGTTCATGGTAGAGTAACCAGCGTGGCTGTTCCTCAAAGAGGGAGGAGTTGGGGTGAATGAACACTGTCTGCTGCTGTTTGACTGTGCGATAGCCACTACGAGTCAACCGGGCCGTGTGGTAAAAGTAACCAGCTGTGATGGCCTGAGGGGCAGACAGGAGAGAAAGTCAACCGGAAAAGCCACACATCTGGGGACCCTAAGCACTCACTACCCTTTTTAGGTCAGGCCCTCGGAGAACTAGAAAGGTAAGGAATGCATGAAGAACCCACTGAGAAGGCACCTTCAGTGGTCTGGGGAAGAAAG---CACGGAAGAGCA---CACTCTCCAGAGGAAGAGGCCTAGC-CTCAGGCTGGAGGGACTGCTACAGGCACCCAGAGCAGCTCCCTCTGGAGATTGAGGGCGTGGGAG-GAACAGCAGCAGACTAAAGAAATGCTGACCTTGCGTACACGGATATAGTCCCCCTGGCAAGAGCTGAGACCAACTTCTACGCGTTCCAAGAGCCCCTCCAGCTGTTCTCGCACATCCCGGGCTCGGCGCATTGATCTGAACTGTACGAAGTTCTCATAGCACCACTGAGAAGAGTAGCCACTCTCAGCCCACTGTGAAGATGGTTAAAAAGGGGGGAG-----GTTAAGTACATAGCAAAGCCAGAGTCCCCTGTGCCTCCCTCAGTCCCA-TCACCTAAGCCCAGTGACCTGAGTATAGACGTTCAGCAGAACCAGGTGGTCTCCACCAGGGAGGAAAAAGTTGACACGGGCGTTGTCAGCATGAACTACCTTGTCCTTGGGTCGGTAGAAGATAGAGTTATTAACAGACAGCATGGCAGCCACTGTCAGAATCTCTTCCGAACAGCTATACCTGGGGCAGGAAGACCAAAGCACAAGGTTCAAAGGAAGACACACAGGTAC--ACAGGGTGGGGT---AAGCGACCATTCTATGG-ACATGTGTCTTCACATGGAGACTGCCGGGTGGGGTAAGGGCTACAAGTCAG--AGTGGATGGATT-TGGTGGTGGTGCTGGCCATGGGGTGTTGAGGAGGT--GGGCTGCAGACGTA--ACAGTGGCAGAGGAGGGCCCTCCACGGAACTGGGGGCAGGAGGGCACTGGGGTCCTCTGAGGGTAGGAAGGACTTCTGCGGCAGGAAGGTGTGGAGTAAGGGCGTCAGGGAAGACAGCACTTCAAGTTCATGTAATGACCTCTGACCTCAACCATGGCAGAGGAATGGCATTTAAAGGTGGTCCCTCCATAACCACATCTCAATGTTACAACCCCAAACCTCAGGAATGAG a score=50633 s hg19.chr6_ssto_hap7 1956105 885 + 4928567 AAGTGTCTTA---CCCTTGTGGGCCTCAAAAGGGGGCAATCAGAGTTATCTAATACTTTATTATGTGTTAAGGGATAGTATGATGAACAGAAAAAGACAG------------ACAAAGGGGACCCTGGAGACAGAGGAGGCCTGGCCTGTTTGT------GTGCTGGGGGCCCA------------------------GGTGGAGGCG-AGGGCTTACTTCTCAGAGGCTAAGATCATTTTGGACAGCATGGGGTCCACCGGCAGCTCTGCCATCTTTCGACCAGACTAAGGAGAAGAGAGAGAGAGTTGAGCCCAGTCCTCCCTCAGGTTTCCCGCTACTACTACAGGGGTCCCTGGAGC-CATCCTGACCCCTATCATCCTGCCTCCACCCATGCTGTC-CCCCGACTCACCGTGGTGAGCTCCCCAAGGTGGTTGAGGGCTCCCAGAGCATACAGCTGCTCCAAAGCCAGCAGCAGTGTCTCATATGGTGGAGGGTCCAGGAAATCAAAGTGCATTAGGTCATGGATCCCTAGAAAGAGGTGTGATGGATGGAACAGAGTCCCTTCAAAGGACAGTGACTCCAGCCCCTCCCTCCTCTCTC---------AGGTAGCCCAATCACCTAAGCTCTTGAGCAGCAACACGACATTGCCCAAGCTGGTCCTCTGGATCTCAGGCACTGTGGTTTCCTCAAGCTCGTGCTGATAGGCCCAGGCGGTATACAGGCGGAAGCACTTCCCTGCAGCCACCCGACCTGCCCTGCCAGCTCGCTGATTGGCTGAGGCCTGGAAAGAAAGGGGA-ACAGGCTGGCTGACAATTTGGTCAGGGAAAAGAAAAAG-GCAGTATTTATGCAAGAAATCTGGAAGGATGCAAACTGCTCATCCCGGTTCCCTAGGAAGCCCCCACCCTGCTTCTGAGTTGGACCTTCTCTGTGGG s canFam2.chr12 3464357 927 + 75515492 AAATGTCTTATTGCCCTTGTGAGCCTCCAAAGACGCAGAAAAGAGTTTTCTAATAATTTATT---TGTTAAAGAATACCACAGCAGAGAGAGAAAGGAAAAAGAGCAAGGTCACAAAGATGGCCCAGAGATGGGAGGAGGCACAGCCAGTTCGTGTGCTGGTGCTGGGGGCCTAGCCAGGCTGGCAGGTATGGGGTAGGGTAGGAGCACAGTGCTTACTTCTCAGAGGCCAAGATCATTTTAGATAGCATGGGATCCACCGGTAGCTCTGCCATCTTTCGACCAGACTAAGGAGA--GGAAAAAGAGTTGAGGCCAGTCCTCCCTCTGGTGCCCCTCCAGCA----------CCCAAGAGCTCACCCCAACTGCT-TCATCGTGCCCCAGACCATGCTGCCATCCCACCTCACCGTGGTGAGCTCCCCAAGGTGGTTGAGGGCTCCCAGAGCATACAGCTGCTCCAAAGCCAGCAGCAGGGTCTCATATGGTGGAGGGTCCAGGAAATCAAAGTGCATTAGGTCATGGATCCCTGAAGAAAGATATGAGGGGTAGAAGAGATTCTCTGCAGGGATCTGTGACTCTAGCCCCACCTCCCTCTCTCTCAGGACTGGGCGAACCCAATAACCTAAGCTCTTGAGCAGCAACACAACATTGCCCAGGCTGGTCCTCTGGATCTCAGGCACTGTGGTTTCCTCCAGCTCATGCTGGTAGGCCCAGGCAGTATACAGGCGGAAGCACTTCCCAGCAGCCACCCGACCCGCCCGACCAGCTCGTTGATTGGCTGAGGCCTGGAAAGAAAGGAGAGGTAGGCTGGCTGACAA-CTGGTGAGGAGAAAAAGGAAGCGCAATATTTATGCAAGAAACCTGAGAAGACGTAGGCTGCTTATTCCGGTCCTCTAAGAGGCCCCCCACAGCCTCCTGAGTCGAACCTTCCCCACAGA a score=20603 s hg19.chr6_ssto_hap7 1957022 341 + 4928567 CAGGCTGACCTTGCTGCAGGGTGTGACAGTGAGCGATTCCATGCCTGTGCGGGGGTTGTAGCTCTTCTGCTTACAGAACCCTGGATCCAGCACATAAATGATGCCCTCAATGGTGAGTGATGTCTCAGCAATGTTCGTTGCCACAACCACCTGAGTGATAGGATATGGGGTCACCCAGTGACCCCACCTACCTAGTTACCCAGAAAAAGTAATCTTGGAAAGTTAGGAGTAGTGAAGCAGTTGCAG-TAAGGGGCAGGAGCTGAGGGAATTAGTAGTATCCAAGGTCAGGAGCAGGGGACAAGGCCAGAAGACAGGGGACAGGGAAGTGGGGGCT--------------GGGAGTC s canFam2.chr12 3465304 346 + 75515492 CAGGCTGACCTTGCTGCAGGGTGTGACAGTGAGGGATTCCATGCCTGTGCGAGGGTTGTAGCTCTTCTGCTTACAGAACCCTGGATCCAGCACATAAATGATGCCTTCAATGGTGAGTGACGTCTCAGCGATGTTTGTTGCCACAACCACCTGAGTGAGAGGATGT--AGTCACCCGGAGACCCCACCCACCAAGTTCCCTAGAAAGAGTAATCCTGAAGACTT--GAGTAAAGAAGCAGGCACAGATAAGGGACAGGAGCAAAGAGGAT---TATTGCCTAATGTCAGAAGACAGGGACAAGGCCAGGA---AGGGTTCAAGGAGAGAAGGAATGAAAAGAGACATAAGGGAATC a score=30991 s hg19.chr6_ssto_hap7 1957363 838 + 4928567 AGCAGGGCCAT-AGGAGGAAAGGAAATGGAGAAGAGGATTTAGGGTTTTTTTTTTTTTTCAGAGATGGGAAATGGGGGTGTTCAAGTTCCTGCC-CGATCCTCCCCATCACCGCTTTCG------TCTTCACACAACACttcctgtaagagcctcctaacgtgtatccctgcttctgctcctagcctctgtcacatggcat----------ccaggatggtccttttaaaatacaaacctgtcacatcact--ccccatccttcagtggcttcctatcctactctagaattcaatccaagccccttaaaagcctggatcacctaccccagctgcctttctgacctcatctgctagcactccaccacctccctcactcctcccacacactgctttgctctgcccaag-taagtgcactcctcact-ggatcatttgcatcagctattccctctgtctggcatactcttctcccagatatcagcctggctccctccctcacctggtttgggtctctattccactttccccttactgaagaggccctccctacaccccaaggaaaataccttcatgccagtcctcactccca--ccccacagagtcaagttcc-atcctactatgctgccttgtatctcttcatagcactggccacaaattgacaatatgtatttatgcatccactgcttccccgatagaccacaagtgcaagtt-----------tgttaggctaaggactttgttttgttcatcactgtatcatcaacccc----tgtgtacctgacacacagaaggaactcattaaatatttgttgaatgaaAGTTATATCTCTGCTCAAAATCCTTTGACTGCTACTCAGCTGTCTAAAGTCCAAAC s canFam2.chr12 3465831 815 + 75515492 aaaAGAGACATAAGGCGGAAAGGAAATGG----GAGGAGTTAAA----TTTTTTTTTTTTAGAGATGGGA---GAGGGAGTCCAGGTCCCTGCCTccatctttcccactaccactttcacaatcttcctcagctaggacttccttcaatagcctcctcatgtgtctccctgcctctactccaagtcctgcttacctggcattcttctggcacccagattgtcctttaaaaatgtaaacctgtcacatcactaacaccatccgttgatggcttcccatcctactggagaattatatccaagccccttaagtctccaagtgctcta---------cctttctgatctcatctccaaggact--acaggctccgtcgttccactcctgcacagttgctccctggctggtctgagcacactcctcactcgggtcctttgcatgagtgccttcctttgctggacacactcccttcccagctatcagcctggctccctccctcactgggttcaggcctcagcttccctttcacctt---------------cccataccccaaggaaactaccttcctgacattgctcactcccagcctccctggagtcagtctccttttcccccatgttgggctatatctctccacagcattggtcacaaatcagcatcaggcatctacgcgtccactgtctcct------------aatttaagttagactgtcggctgtgaggctagggactttgttctgttcatcactgtatcttcatgcccaagaagagtatctggcacatggcaggagcttgttatacatttgttggatggaAGTTACGTCTTTGCTCAAA--------------ACCCAATCATCTAAAGTCAAAAT a score=6283 s hg19.chr6_ssto_hap7 1958822 138 + 4928567 CTGTCATCAAAGGCCCTCCCTAATCTTAGCCCCAAATTGTTTTTAGCCTTGTCTCCTACTCCTTCACCACATGAACCTCCCACTAAGCCTACTAGCTCACACTCTGACCTCAAACATACCTTGGGCCTTCCTCTGATG s canFam2.chr12 3466654 116 + 75515492 CTGCTATCAAAGGCCTTCCCTAATCTCAGTCCAGAATTGTT---------------------TTCACCACATGAACCTTCCCCTCAGCCTTTTGGATTACATTCTGA-CTTAAACATACCTTAAGCCTTACTCTGGTA a score=71598 s hg19.chr6_ssto_hap7 1959273 1230 + 4928567 TTTCTCTTAAAGGTCCATATCAAATCCCACCTCTTAGCACATCAAGGACTTCCCTTCTCCACTGAATCTAC-TGTGCATACTTTCCAGATCACATATTTGGCTCTCTCTTGGTTCACACCATATTTCTCCTCTCTTCAGTCCCAGGAACAAGGGACTGGCTGCTCCTCAGCTGTG----TGCAGCAGTGCGCAGGACTCACCTTGCATGGGGCAGGCACACAGCTTTTTCACTACTAGTTGTGGGAAGCATAGGGGTGAAGAGTGTGGGTTTCTCCAACTGACCTTTCGTGCCCCAGGTGGTGTGGGCTGGAAGATACGGGCCTGCATGTCAGAGGGCAGATTGGCATAAATGGGCAGCACCAGGAGCTCCCGGATTTTGGAGCCCAGGCGGCGGCAGCGATCCTGGAGCATCTCACAGGCAGCCTCAATCTCCTCCTGGATAGAGGGTAGGGAGAGCAGCAGGGGTCCCAGAGTCACAGAAGGCCAACATGCCGGCCCTGTCTTCCCCTGGGATACA----TCATCCCCTCTCCCCACCATGTCAGGCACCTGTCCTGTCAGGAACACCAGGATATCCCCAGGGGGCTGGGTCACATGGATCTGCAACACAGATACTACACAAGCTTCCAAGTAGTCAGCCTCTGGAGCCTGGAGAGCAGAAAGAGATGGGGTCACAGGAGGGCCACCTGCTTAGGCAAACCTTTCCTCTCCTCCCAATTCAACATACACTTTATCCTAGTTCCCCTTTGAACCTTCCATTCCATCTTTCCCTCCACAGGATAACCTTCTCCAAAGGCCTCAGCTTTTCTGCCACAGACTTAAGCCCATCCTCCCTGAGGGG-GCACCTTGGTGTAGAAGATGTCCACAGGAAACCTGCGTCCGGGGATTCGAAACACAGGGGCGTCATCAAAGAAGGTGGAAAAACGGGCAGTGTCCATTGTGGCTGAAGCCACCAGGACCTTGAGCTCAGGTCGGAAGCGAGCAACATCCTTGATCAATCCAAAGAGAATGTCTGTGTGTAGGGTCCTTTCGTGTGCCTCATCCACCATCACCACGCTGGGGAGGGAATAGGAGAGCAATGAGGGAAGAGCGCTAGGCAATGCAGTTATCAGACACCAGGGTTAACTGGATGAGAGGGGAGTAATGGACACAAAGAGTTCAAGAATGACTGTTGACGGAGGGGGCTCTAAGGAGAAGTCAGCCATCCCACTT-ATGTAGAGCAACAGAAAGTCAGAGA s canFam2.chr12 3466782 1210 + 75515492 TTTTCCCTAAAGATCCAAATCAAATCCCACCTTTTGGCACCCTGAGGACTTCCCTTCTCCTCTGCATCTCCACATACTTACTAACTGGATCAAATATTTG-------CTGAATTCAC---------CCTCTCTCTCCAGCTCTGGAGGCTAGGGATTGACTACAACTAAGCCTTGCAGCTGCAGCAGTGCCCAGGACATAGCCTGCATAGGGCAGGCACACACCCTCTTTTTCACTATTTGTGTGAACTATAGGGGTGAAGAATGTGGGCGTCTCCAACTGACCTTTCGTGCCCCCGGGGGTGTGGGCTGGAAGATACGGGCCTGCATGTCAGAAGGCAGGTTGGCATAAATGGGTAACACCAAGAGCTCCCGGATTTTGGAGCCCAGGCGGCGGCAGCGATCTTGGAGCATCTCACAGGCAGCCTCAATCTCCTCCTGGATTTGGGATGGGGAGAGCAGTACAGGTCCCAGAGTGACAGAAGGCCCACCTGCCAGCTCTGTTTTCCCCTGGGATACACACCTCATTGTCCCTTGCC-CCATGTCTCACACCTGTCCTGTCAGGAACACCAGGATATCCCCAGGGGGCTGGGTCACATGGATCTGCAGCACAGACACCACACAAGCTTCTAGGTAGTCAGCCTCTGGAGCCTGGGGGTGAGGAGGAGA--GGGTCACAGGAAGGCCATCTGTTCAAGAAA---CTTCCTCTTCTCCCAGCTCAATAATCAGTTTATCCCAGTTCTTCTTCAGACTCTCCATTTC-CCCTTCCCTCCTTGGGACTACCTTCTCCAAAGGCCCAAGCTTTTCAGCCTCGCACTTCAGCCCATCCTCCCTGAGGGGAGCACCTTGGTATAGAAGATGTCAACTGGAAACCTGCGTCCAGGGATTCGGAAGACAGGAGCATCATCAAAGAAGGTGGAGAAACGGGCAGTGTCCAGTGTGGCTGAAGCCACCAAGACTTTCAGCTCAGGCCGGAAACGAGCAACATCCTTGATTAACCCGAAGAGAATGTCTGTGTGTAGGGTTCGTTCATGAGCCTCATCTACCATTACCACACTGGGGAAAGAACAAGAGAGCTGTGAGCCAGGAGAGCTGCCCAGGAGAG------GACAACAGGATCCCCTGGACAAGGGCACAA-AGGGAAAGCAAAGAGCCCAATGGTGAATATGGGAGG-GGGGGTTCCAAAGAGAGGCCAATCACCCCAGTTAAGGAAGACTAATACAATGTTAAAGA a score=5915 s hg19.chr6_ssto_hap7 1960503 174 + 4928567 AGGCCAGGGCCCCATGATCTGCAACCTATCCCAGCCTCAGCAGATAATAGGAGACAAGATGTAGAGGCTGCACACTGAGGCCAGGACAAGTTAGCCATACCCTCTAGTTCAG--TCAAGAGTCTGCTTAGACTCAGCAGCTGCTCTTACTAGAAAAAGTTGAAGGATATGTTTTAg s canFam2.chr12 3468411 159 + 75515492 AAGCCAAGGGCCCGCAGTCTGCAGTTTATCTCAGCCTGGACAGACAACAACGGCCAAGATCTGGAGGCTGAAAGCCAAGGCCAGGACAAGTCACATATGCTCTCTGGATCAGAGTCATGGATCTG-TTAGACTCAACAG----------------AAATAAGAGTTTCTGTTTTAA a score=5518 s hg19.chr6_ssto_hap7 1961482 178 + 4928567 AAAAAGTGGAAGGCAGGGTCCCTTTCAATAAGGGTGGGCCAGCAAGGCTGACTGGGGGTAA-----TAGACCTGAGCTGCTGTGATTCAAATAGCCTAGAAGCTCCTGGTGTCCTGTGGGACAACTGCTGCTGGCATCATTCTTGA--CTGTTTC-TTCTTTTGGAGACAGGAGCAAGTTAAGCCT s canFam2.chr12 3468579 183 + 75515492 AAAAAGTGAGAA-CAGGGCCTTTGGGAGTAAGGCTGGGCTCCCCAGGCTGGCTGAGAATGAACATACAGACCTGAAGCACCAGGATTTGCACAGCCCAGGAGCTCCTAGGCTTCCATGAGACTGCTGTTGT--GCATGTCTCTTGGTCCTGCTGCATCCTTCTGGAGAGAGGAACCAGGTAAGCCT a score=40474 s hg19.chr6_ssto_hap7 1961660 979 + 4928567 TTCTACCTCAACTCTCACAGGACTCTGCATGCTCCTTGGTTTCCTCCTAACTCAGTTATGTGCATGACACCTTCTT--TCTCTTTGTT-----CTTTGGCTTTTCTGGGTGGCAGCCAAGTCC-CAGGAACTCATCCCCATCTTCCCCTACCCACCTCCCTGACCTCAACTCTTTGTGCCTAACCCTAACTGTGATGGTGAAGTCCCCAGCCATTCCACAAAGCAGGCTGGCTCGATGGGCAAAAACATCTGCATCAGACACTCTTGCGCTGGCTGGCTCTCCATGGGTTCTTAGAGATCTTTTGCAAGGGATATGAAGGATAAAATCCTATCTGTCCAATTGCTCCA-CTGTGATCTTCCAAGACCAGaaattcacagcctctgaagagtcaaaaaggcacatattgttcagctggcctgaccccacccccattacattcatgaatcccttttccccctcaacacatgttcaaccaacccctgcttggccatttccagcactaagagctcattattcacagaccaagctac-ccaagacttgtgtggagggccaagacccagagtccaaccac------tctgac-------aggccctgcaatctccaccactctgagggttactcagccattggtattgagttggaatctgtctccc-tgtaacctc-cccatggctcctagctatgtcgtgtagggtcacataaaacaatct-gatccttctttccatgtaacagcc-ttcacatatttagagggaaccaggatgcttcct---gtttctcc-ctctgagctgagcattccaagtgttttcaaatggtcttcacacggtatttcaagtctcggcagcaatgctctgctatcctggttgttttctaaacCCTGGAGATGAATGGGGAAAGAAGAGGCTTTCTCTACAATCTCTTCTGTCCTCCAGCCCCATCTCCGTGGTACCTGGAGGTCAGTTCAAGGACCATTTGAACCACAAAGATTCAAGAACGGGTGGATT s canFam2.chr12 3469010 957 + 75515492 TTCTACCCCAA-TCTTAGAGGCCTCTGCGGGCTTCTTGGTCTCCTCCT----TAGTTATATGTGGGACACATCTTTGATATCTTTGCTAAAGTCTTTGGATTCTC-AGGTGACAGCCATGCCTGCAGGAGCTCACCCC----------------------TGACCTCAATTCTTTGTGCGTATCCCTGACTATGCCAGTGAAGTCCCCAGCTGTTTCACAAAGCAGGCTGGCTTGACAGG-AAAACCGCACACCCTAAACACTCTTGCACTAGCTGGCCTTCCATGGTTTCTGAGA---TTTTTGCAAGGGATGTGAAAGCTCAGATCATATTTGTCCTGTTGCTCCATCTGTGATCTTCTAGGACCagaacttcacagcctcctaagatttgagaaaccacatactgctcagctggcctgatcccaccagcagcccatgcacagatcccttctcctcctaaacacatatttatccaagctctgcttggccaacaccagcactgggaatgtactattcacagaccaagctactccaAGACCTGGGCCAAAGGCCCAAGATGAGGGCCCCAGCACACAATCTCTACCTCAATTGAGGGCCT-CAATCTCTACCACTCT----------CGcttcttagtgttgcactgaaacctctttcccctatagccactcccgtggttgctagttgtgctcgctgcagtcacgtgaaacaagcttgacctctttttccacggagcagcccttcccatatttagaaggaaccgggatgtctccctgagtctcttctctctaagctggacattctaagtttcttcaaagggtcttcacgtggcttttcaagtctctagagcaccattctgccatcctggtgtttttctaaacacTGCAAGC-AATGGGGGGTGGGGGGTCTATCTCTGCA---------GTCCCTCTACCCCATCTCCATGGTGCCTACAGGTCAGTCCTAGGACTGTCCACACCATCAAGCTTCAAGAACTGGTGGGCT a score=33571 s hg19.chr6_ssto_hap7 1962639 749 + 4928567 AATCAGAAGACAATGGCTGAATTGGCTGGGTGGGAAGAAGGGAGAGAAAGGCCAGAGATTAGAGA----------------------------------------------------------------------------------------TACCTGTAACTCGCCAGGTCAGGCTCAGAGAGGAACTCCCGGAGAAGCATCCCATCTGTCATGTAGCGGAGGACAGTTCGCTCTGATGTGCAGTCCTCAAAGCGGATGCTGTAGCCAACCTGGTCAAGGGAACCATTAGCAACCAAGTGTGGGCTGGTGTGCCCTGAAAGGAACTTGGGGAAAGGTGAAGTGGGG-CAGCACCAAGACTTCTGCTGTAGGGACCTGAGGGAACTGTAGACTGAGTCACAGACCCCAGA-----CTCTACCCCCCGGTTCCCTAGAAATCTCACCTCATTCCCAAGCTTCACACCCATCTCCCGGGCCACTCGGGCGGCCACACTCATGGCAGCCACTCTCCGGGGTTGGGTGCAGGCAATCTTCATACCCTTGTTTGTATAACCCTGAATGACAAAGAAAAAAGAAGAAGTTTGCCCTTTACTAAATATGCACCCTGGGACCAGGTACATTTCAGAGAAAGAAGTTGTAAA-----AACCAGGCAGGAGAAAA-GGAGGAAAAGACAGATGCTGAAAACCAGAAAAGAAGGGCAAATAGATAGGATGACAGACCTAGGGCCCTCAAAGGGGGTCCTCACCCAGCTCTGGGTAATTAAGTTCATGACTCTGCTAGACTTGAGCTGGAAAAGAACAGATTAGCTGAGACAGAGCCAGCTAAGGTAAAAAAGCAGGAAg s canFam2.chr12 3470173 786 + 75515492 AATCAGAAGACAAAGGCCAAACTAGCTGGATGACAAGAAAGGAAAAATAGGCTAGAGATTAAAGAAGACACAGGAAGGTGCTGAAGGGTCAGAATGCAGCAGACTGGGCAGGAATGGTGGTGGCTCTCTGGTGGGACGTGGTGACCCCATGTGTACCTGTAACTTGCAAGGTCAGGTTCAGAGAGGAACTCCCGGAGGAGCATCCCATCTGTCATGTAGCGGAGGACAGTTCGTTCTGATGTGCAGTCCTCAAAGCGGATGCTGTAGCCAACCTG-TCAAGGGGACCATTAACGATCGAGATTGGGCTGGTACTCCTGGAAGGGAATGCAGGGCTAGGGAATGAGGGGTCAGTGCCTGGACGTGTGGTGTGAAGCCCTA--TGCAGTGTGGGCTACGTCCCAGACCCTAGAGGCTCCCCTCCCTACCTAGGCCCCACAGATCTCACCTCATTCCCAAGCTTCACACCCATCTCCCGGGCCACTCGGGCAGCCACACTCATGGCTGCCACTCTCCGGGGCTGGGTACAGGCAATCTTCATTCCCTTTTTTGTGTATCCCTGAATGACAAG------AGAAGAGGTTTTCCCTTTGCTAAATATAT-TCCTGAGGCCTAGGATAATTCAGAGAAAAAAGGTGTAAGTGCACGACAGGGCAGGGGGAGATGAAGGAACAGACAGAAACTGAAAACCCGA------------------------------------CCCTCTGAGGG-----TCCCAGACTTTTGGGTGATCACATTCA-GGCTCAGCTAGATCTGAGATGGAAAAGGACAGACCAACTAGGGCAGACCCAG-----------AAGCAAGGGG a score=84026 s hg19.chr6_ssto_hap7 1964587 1574 + 4928567 GCAGGAAAAT-AGTCCTTTAACTCCTTGTTTTTTGGCC-----------ACGTTGG-----------AGCATAGGGAGGTCCACATTTATACACGCCCCACTCCACCTATCCATCTACCCGTCCTTCCAAATGAAATGAATGca--------------------ggaagtgagaacagaaatgtgaaaagggtatggtctttactctcaagaatttcacaatttagtggaaaagat-----------------aggtaagtgactactaaaaatataatgtaaaaggagctctgacaggaatgaggacaTTGATGCCAGGTGCCCTGGCAAGCTGAAGGGTG-AGATGACTGTACCTCCTCAAAGAGATACTGCGGGATCTGGGTGGTCTTCCCTGAGCCTGTCTCGCCTTCAATGATGAGGACTTGGTGATTTGCAATAGCAGCCAGGAGCTCCTCTCGAAATGGGAACACCGGGAGGCTGCGGCGGACGGCCTGGATGGACTCTTTCTGCTGGGCCTGAGTTGAAGTGGGTGGAGCTGACGGCTCCTAAGGAAAGAGAAGGAGGTGTGAGCTAAATAGCTCGCTACGGGTCTTCCTCAGAAAGTCTCCCAGCTCCCCT-CTTACCTCATCACCCTGGAGCTGAGTGGCCCGGACAAACTCAATGGTCTCCTCCTCCTCCAGCACCAGTTGATACTTGGGCTCCTGAGAGGCAGCATCTCGGGCCCCAAACTTCAGGGACGCTGCCCCAAGCCGCGCCTCCTCCCAGCGCCGCTGCTCCTCCCCAGGGGCTCCTGATTCCTCCTCCACTAGATCCACAGCTCGGGCTGGCTACAGAGAGAGGGGATATGTGAAGACTCAAAAACAGGATGTCCTCTCTGCCC---TCTCCCCTCTTCCCATTACTACCCCCGCCCACTGCCCATTGGGAACGGCAAGGCAAGAAAGGGGATGACCCACGTGTTGCCCAATCCCCTGAAGCCTTCCCCACAACTTGTCTTGGGGACCAAGGCTGAAGCAGACGCCGCTTCACCTCACCTGTCCTCGGGTTTCCTTGGGCATGTGGTAGCGATTGGTGGCCTCCAGCTTCTCCTGCTCCCCAGCTGCCCGGTACTCCCGGGCGAGATCCCGCACTCGCCGCTTATATTTGAGCTCCTGCCGCTCGTGCCGGCTCAGCTCCACGTCCCCAAAAAGGAACTCCTCATCAGCCAGCTCCGCCTCCAGGTCCTCAAGCTTCTCTCGCTCCCGCTTAGCCAGGTACTCTCGGCGAGATTTCTTCCGCAGCTCAGGGACCTGAGTTGGGAAAGGACAGTCGAATCCTCATCTTGCTGGAGGAGCAACCCCTTTCTCTACCAATCCCTACAAGGGAAAAATCCCCTGACAGGCAGGCATGAGAACCTCAGGATGCACCCTCTACCTTCCCTCTGCAATGCACAACCAAAACAATGACATACTCAAATCTGGGCCTCTTTGGATGCTACATGCTGACCCCACATCGTATCTTCCTGCAGCAGAATCCAGCTGGAAAGTCCTCttaggcagcattatcatctttgttaatatagatgcactagggagatgtctgcgtagcttatattttactcttgccattttattcaaattagtggaaagggggaaaa s canFam2.chr12 3470979 1564 + 75515492 GCAAGAAAATGAATCCTCTGACTCCTTGTTCTTTGTCCTTTGCAGAGGACCGATGGCTGAATGGGTTGGTATGGGAAGGTCCCAA----------CCCCAC--CATCTACCTGTTTATGCATCTTTCCAACACGAATGCTGGCACTAGACACAGATACTGTGTTAGAAGTGAGAACAGAAACAGGAAACAAGT-TTGCCCTTATTCTTAAA---CTCACAATTTAATGGAGAAGACTATGATTAAAGATGAAAAGGTAAGTGACTGCTCAAAACAACATGTGAAAAGAGCTCTGACAGGACTGTGCTTGTCAAGGGCCGGTGGCC-GGTAACCTGGAGGGTGCGGATGACTGTACCTCCTCAAAGAGATACTGCGGGATCTGGGTGGTCTTCCCGGAGCCCGTCTCACCCTCGATGATGAGGACCTGATGATCAGCAATGGCAGCCAAGAGCTCCTCGCGGAATGGAAACACTGGGAGGCTGCGGCGGACAGCCTGCACGGACTCCTTCTGCTGGGCCTGGGATGGAGGCGATGGGCCTGATGGCTCCTGCAGAGGAGGAGGG--GTGTGAGCTTCAGGGTCGGCTTCCCAACCTCGTTAGAACGTGCCACAGTTCTCCTGCTCACCTCGTTGCCCTGGAGCTGAGTGGCCCGGACAAACTCAATGGTCTCCTCTTCCTCCAGCACCAGCTGATACTTGGGCTCCTGGGAGGCAGCATCTCGGGCCCCAAACTTCAGAGATGCTGCCCCTAGCCGGGCCTCCTCCCAGCGTCGCTGCTCCTCCCCAGGGGCGCCTGATTCCTCCTCCACTAGATCCACAGCTCGTGATGGCTGTGGAGAGAAGG-ACATGTGAAGAC------AGAGGATGCCCTCTT--CCCAGGTCTCTCCTCT-CCAGTCACTATCCCTACCCACTA-------GGAAAGGCAAGACCAAGAAGGGGCCAGTGGAGGCCCTGTCCAAAGCCCTGAAGACTTCCCTCCA-CTCAGCTTGGAGAGCAGGGCTAAAGTGGACTCTGCTTTGCCTCACCTGGCCTCGGGTCTCCTCGGGCATGTGGTAACGATTGGTGGCCTCCAGCTTCTCCTGCTCCCCAGCCGCCCGGTACTCTCGGGCCAGATCCCGCACTCGCCGCTTGTATTTGAGCTCCCGCCGCTCATGTCGGCTCAGCTCTACATCCCCAAAAAGGAACTCCTCATCAGCCAGCTCAGCCTCTAGGTCCTCAAGCTTCTCTCGCTCCCGCTTAGCCAAGTACTCGCGGCGTGATTTCTTCCGCAGCTCGGGAACCTGGGTCAGGACAGGGTAGCCAAATCTTCATCTTGCTGGAACAGCAACCCCCTTCCTTACCTATCTGTAAGAGTGACAAATCCCCCAACAGGCCAGCA-------------GTG------------TCCTTCTGCAATGTCCAACC-------TGACCTGCCCCAAACTGGGCCTCTCTGAAAGCCACACACTGACCCCCAACACTATCTTTCAGCAGCACAATCCAGCTTGAAGGCCCTTCTGgacagcttcgccatcctggtcaatatagatgcattagg--gttatttgaatgttttaggttttattct----attttattcgacttagtggaaaggaggaaaa a score=17790 s hg19.chr6_ssto_hap7 1966161 440 + 4928567 taaaaggctaat-ccagcatttagaagcacaggactcaaaccgaaaacaattcagacaaagatagaaaccagtgagggggccaacaggaggcaatcttcagccccagttagatgttctttggtcttaaacggaatgactgtagttt-------gaggaagggagaaaaacTGATTATA-AAAAGTTAGGACTACAGCATC--AGAGTGTTTCTGTAAGGCaaatgtaatcagggatgt---ttggctttctggtactaacctctcttcac--catgctgtgtctcacttagtttctacacatttacctttgatacaaacttttcaggacacattatggatgacagcagaaaactgG---CAATATCTATAAGGCCCTT------TCCTGCCAGGAGTCCTCCCACTATGACATCA---TCCTCTCTGTGATC---ACAACTTCCTCTACTGCAA-GGTCAAAGCCCCTCTGG s canFam2.chr12 3472757 465 + 75515492 taaagggctaataccagcatttagaagcacaggtctcaatctgaaaacaagtgagacta--ttggtaaccactggatgtgccaacagaaggtaatcttctgccttagttagatgctccctggtcttaaatcaaatgactatagtttggaaaagggggggggggggaatacagtatatacaaaaaatggaagtacagcattagagagtgtttttgcaag----atgtaatcagaaatgcttattagctctctgggactaacctctcctcgcctcatacaatcttgcagctagcttctacatattt-cctttgataggaggttttcaggacacataatggatgacagataaagactggTCACATCATCCTTAAGGCTTGTCTCAGCTCTCACCATGAGCCTGCCCACTGTGGCAACACTGTCTTCCCTGGGATCAAAACAGCCTCCTCCACTGTGGTGGCCAAACTTCATCAAG a score=8236 s hg19.chr6_ssto_hap7 1966901 175 + 4928567 CCCTCTGCTGTTCTACCCTTAAGGGGCCTGGTTCTATTTAGTTGTTTGGCTTTTCTTGTTTGTTCTGTAAAGACTTAAAATGCAGTTTATGATCATGACCTAATCTGGGTACCACAGTCAAATATTCCTTCC-----ATGGAAGAGCCAGATAG-ATTTTTTTTTTAATATGGG---CAAAaaa s canFam2.chr12 3473222 173 + 75515492 CCCTCT----------CCTGGGGGTCCCTGATTCTACTTAATTGTTTGGCTTTTCTTGCTTATTCTGTGAAGACTTAAAAGG-AGTTTATGCTCATGATCTAATCTGAGTACCACAATCAAATACTCTTTCAACCTGATGGGGGAAGCACATGGAAGTTCTTTTAAAATATGGGCCCCAAAAAA a score=9940 s hg19.chr6_ssto_hap7 1967076 192 + 4928567 tcagagccatttgagcattaaaaag-aataatgatgtgagattataaaatactgaaaaataaaaattcatgagtccaatttgacacacacaaacaaaaaacaagggaaaaaaatctgt--caccagtgaaatgactgttacagcaaacgccttactctaaaaattcgtatttaaaaggaaacaaacatttaccct s canFam2.chr12 3473527 185 + 75515492 tcagggcaatttgagtatcaaaaagaaaaaatcatatgcaactgtaaaatattgaaaaataaaaactcatgagtccagtgtgacacacatatacacaacacatgggaaacaagTTTTTACCACCAGTGAGATGACTATTACATCAAACTCCTTACTTTCAAAATTAGTAATT----------AAACATTTGCCCT a score=2047 s hg19.chr6_ssto_hap7 1967268 32 + 4928567 ttttaagaaggaactgtagcttgttcctagtt s canFam2.chr12 3473925 32 + 75515492 TTTGAAGAAAGAATTGCAGCTCATTCCTGGtt a score=2814 s hg19.chr6_ssto_hap7 1967316 60 + 4928567 tctttatagacaaattctagccaatacacgtaacaggaatgacagaatcaaaaaatcacc s canFam2.chr12 3474856 59 + 75515492 tctttatata-aaaggttagccaataaatgtaggaggaatgtcacactccaaaaatcacc a score=14741 s hg19.chr6_ssto_hap7 1967687 358 + 4928567 tttgcaatccccaataaaaataacatgttcaggaaaggattaccagtggc-----ttctaaaagcatttgatgaaaggctattggtagaaaggatattaatactaatatatagatacacaactggatagtatgtcccc-----gtgatatgacataatatgaagtgcacatcaccgcccaagaagtgttcctgccacaactgtttaatctgagtgtcaataagctttagacccaattcctgcttcaaagaaagcacagggcagagaagtacttaacaccacaagataagaatcaggcaaatccagaatgtaggacac--tgcaaggtgagacagacagagagagaaacaaacttaacatctaagacccaa s canFam2.chr12 3474915 358 + 75515492 tttgcaatccccagt-gaaacagcagattcaggaaagcattagtagtgctagttatgctaaaacctttagatgaaaggctgttggcacaaacgctatctgcacta----acaggtacataatct----gtatgtccccctaaagtGAT-TGGTGTCATGTGAAGGGTACATCACCACCTAAGAAGTGTTCCTGTCACAACTTTTTAATCTGAATTGAGGCAATATTTGGTCCCAATTTCCACTCTAAAGGAAGCATAGGGCATAGAAGAACTCAATACCACAAGATAAGAGTTAGATAAATCCAGAATAAGGGACATGGTACCAGATGAGAGAGAGCAAAAG-GAAACAAAC-AAACATAAGAGACTGAA a score=4506 s hg19.chr6_ssto_hap7 1968745 152 + 4928567 AAATTAAATTCAGGCCAAAACAGTAACACCACTACCACCACAACTGCACTGA--GATGTCCCAGAAGCCT--AACCACAGTCAATTT-CAGGAAGAGATATGAGATAAATTGGTCAGGAGAGACCTGGGAACCAGTAGGCCATTCTTAGAACTCCAA s canFam2.chr12 3475490 144 + 75515492 AAATTAAATTCTGG--GAAATAAAAACATTAC---------ATCTATACTGACAGATATCTTAGAAGTCTCTGACAACAGTCATTTTGTGGGTTGGGTCATGAGATGGCTTGATCAGGAGA--TCTGAGTTCCACTAGGCCATTCTTAGGACATCAA a score=10176 s hg19.chr6_ssto_hap7 1969860 215 + 4928567 GTCTCAAAATTCTATTGGGGTATTGGGGAATCTAAGTGTGACTTTACTTGACAAGACCAGGCCTTTGGAAAACAGCTTACCCTACCTAGTTTCACACCATAAAAAGTCCAGTTTATGAATTACAAGGGCTCTGTCCCTGTCCAGTGAGAAGAC-------------ACAGGGAGATCACAAAGCCACATAAGGGGTGCAGGAATTAGGTGGTGGGAAGGTATTTGGAG s canFam2.chr12 3475634 220 + 75515492 GTCTCAAAATTCTTTTTAGAAACTG--------AAATGTGACCTTACTTGAGAAGACCAGACTTTTGGAAAACCGCCAGCTCTACCAAAACTCATATGATAACAAGTTCAGTTCATGAATTGCGAGGGCTGTGTCCCCAGTCAGAGAGAAGACCAACTTGGGGAATAGAGGAGGATCACACGGCCATGTTTGGGATGGAGGAGTTAGATAGTAGGAAGGCATCTGGAg a score=73603 s hg19.chr6_ssto_hap7 1970078 1371 + 4928567 GTGTGCCTAAGCTGAATGGTCAGCACATCCCTGTACAGTGGGACTGCTGCCCTGCCCTTGCCCTCCAGCAAC-CTTCTTGACAACATTCCAGCTGCCT---CATATCTCATTAGGACTCAGGAATAGGGAAAGCTCACAATTTCATTCACTAATAGAGTAT--ATTTGATCCTAAAGTTAAGAGTCAAGGAGGACTTATGGGTAGCCTCCTTCCCCCTACAACTTAAGAAGGATCCTTCCCTCAACAACATAAGTCTATCCTCAGCTGGCTCCTAACAACCAAGCCCCTCTTCTAGAAACCTGACCACCCCATCAGCATCCACACTGTGCTTCCTCTGTATCCTCTCTCCCTATAC------ACTCTATCAGAAAGTC---TTTCCTTTTGTCTTCTGATCTTGGCTCCCTAGGCCCTGGGACTCACCATGGCCTTCCGGTCTTCCTCGGCCATCTTGAGGCGCTTCTGAGCCTCTTCATAAGCCTAGAAGAAAAAACAAGAATGGAGGGGTGTGAGGCCAAAGAGCCCCCACACTGACAGCTGCTCCC-CTCTAGAATCACAAGGATCATTCAGATGCGCCCTAACACA-AAAAATGTCCCCTCTCAGTGAGGAATCTCTCTGATTGCAGGTACAGCAGACAGTTGTCTTAGCCACAGGATGCACAGGGCTTCTCTCACCACAGAGGTGAACATCTCACTAGAGACAGCCCCTTGTCTTCCCAGAGATCACTATCTCTGCACTCACAGCCAACCTCAGATTTCACCCTGGGATCTT---GGGGATTTACAGAACATGCTGCTCCTATTCACCTTCTTGTCTGACCGTTCCAGGACATTTCGAGTCCGATCCTTGTCCCGCTGTCGAACCCGCTCAGCAAAGGCATCACGCTCCTCCAGGTCCTGAAGGCGTTCACGCTCTGTCCGTTCCCACTCATCTTCCGACTCTGGCTTCTCTGTCTGCTGTTTACTCCCCCTGCAGCCCA-TCCAGGGGATTAAATAAGGGCATAGAGAACACTT------------CAGCCTGCCCCATCCTCTCTCACCCTGCTTCTGACTTACCCTGTTTTCTTCTTCCCTTTCTCAGAAGCCTCTTCCTCCTCTTCTTCCTC------ACGCTTCTTCCTGAGGTGTTTCCGCTTTTTACGTTTCTTCTGGAGGCTGCTTCCAGCCCTACTCACAGTCTCCTCACTGCTCTCTTCACTGTCTTCCAGTAACCTATAAGATCGGTTCTTCTCCAGCAGGGCCCGGGCCTCTCGCTCTGCTGCCCGAGCTGGCTTTTCTACCACTGCCTTTCGTGGTACCTGTCAGTAGAGGGGAAGATAAGGAGGTCTGAGCAACTCCTGATCTCTGCCCTCCCACTTAGCTCTGTTCCT-AATTTAAGCAATTACTTAGTCT s canFam2.chr12 3476063 1349 + 75515492 GTGTGCTTAAGCTGAATAAATAGCACATTCCTAGGCAATGGGACAACTCCCCTGCCCCTGTCCTCCAACCACACCCCTTGATG---TTCCAGCTGACTGAGTACGGCTCCTTAAGTCTCAGGAGCAAGCAAAGCTCACA-TCTCCCTGACGAAAACACTCTGGACTCAATCCTAAGG-----AGTCA-GGAGGGTCTGTAGGTAGCTTCTTTCCCTCTACAACTTAAG--------------------------TCTGTCCTTGGCAGGCTCCTGTCAACACAGACCTCACACCCCAGACCTGAC-ACCCCATCAGCACCCTCACTGTACTTCCT-TGTATCCTTTTTCCCTACCCTAAACCACTTCATCACAAAGTTGTTTTTCCTTTTGCCCTCTGATGTTGGCTCCCTGGGCGCTGGGACTCACCATGGCTTTCCGGTCTTCCTCAGCCATCTTGAGGCGCTTCTGAGCCTCTTCATAAGCCTAGAAGAATC--CAAGGGTGCAGGGCTGTGAGGCCAAAATCTCCC-------ACAGCCACTCCCTCTCTAGAATCACAAGGATCATTTGGATATACTATAGCATACAGAAATGTCCCTTCTCAGGGGGGAATCTCTAGGCCTACAGGTTGAGCAGAGGAT---------CAGCAGACCCTTCTGGGTCCTCTTACTACAGAGATGAACACCTC--CAGAGGCCATCC-TGGTCTTCCCAGAGAGCCCTATCTCTGCAATCACACCCAACCTCAGATCTGACCCAGGGATCTTCTTGGGGATTTACAGAACATGCTGCTCCTATGCACCTTCTTGTCTGACCGCTCCAGGACATTGCGAGTCCGATCCTTGTCTCGCTGCCGAACCCGCTCAGCAAAGGCATCACGTTCCTCCAGGTCCTGAAGGCGCTCTCGCTCGGTCCGCTCCCACTCATCCTCAGATTCTGGCTTCTCAGTCTG---TTTACTCCCCCTGCAAACCAGTCCAAAGGATTACATAAGGTCTCCTAGGAAGCTTACTGCCCCCTTATCCCCTGCCTCACCCTCTCTCACTCTGCTTCTAACTTACCCTGTCTTTCTTCTCCCTTTCTCGGAAATCTCTTCCTCCTCTTCTTCCTCCTCCTGACATTTCTTCCTGAGGTGTTTCCGTTTTCTACGCTTCTTTTGGAGACTGCTCCCAGTTCTACCTACGGTCTCCTCACTACTCTCCTCACTGTCTTCCAGCAACTTATAGGATCGGTTCTTTTCCAGCAGGGCTTGGGCCTCTCGCTCGGCCGCCCGAGCTGGCTTTTCTACCACCGCCTTCCGTGGTACCTATCAGTAGAAGGGAAGATAATGGGATGTGAGCAACTCCTGATTTTTACCCATCTACTTTGCCCCATTCTGAAATTTAAAGAATGGCGTGATTt a score=4192 s hg19.chr6_ssto_hap7 1971725 100 + 4928567 ACAATTACTTAGTTTTAAACCAGCTAACCAGCATTCATTCTCTTTCTTCCTCATGGCTTCACCCCATCTTCATCATCCTGAATGGGGTTTTTTATTTTTT s canFam2.chr12 3477589 92 + 75515492 GGAATGGCCTGATCTTAAACTAACC--------TTCATTGTCTCTTTTCCTCATGGCTTCACACCATGTTCATCAGCCTGAACTGGGCCTTTCAGCTTCT a score=45903 s hg19.chr6_ssto_hap7 1972431 1079 + 4928567 TGCAGAAACTAAGATCcc----------tactgaatcgcaatctgcattttaacaagaaccttggatgcatgttaagagttcgagaaacaccgTTCTATTGCGCTTAACCCGACACACCTAAGCCCTCCTCAATCTTCTCCACTGAGCTGGGCGTCCAGCAGCTAGCACAGTACCTACGCGACAACGGACAAAGAATAAGTGCTTGTG-AACTGAGCTTTCTTAACTTCTCGATGGACCGTTAGGCCAGCCTCACCGGGACAAAT----------------------------------------------CACAGGGCCCCTCCCCACCCCTGCCGACACCTTGTTCCAGAGTCTCAGGGCGAAGTCCCGGGCCGGCCCACTGAGATCCAAGGTATCAGTGTCTCGTAGGCGCTGCACGAACTCCTCGGCAGAGGTGCAGCGCTGTGCGGTACCGATCAGAAACTGGGCGACGTGCCGCTCGCTCAGCCCCAACACCGAGTGCAGCTCGTCCTGAACCCAGCGCTCCAGACCCGCCGGCGTCGCCATGGCGACTCACGCT-CCCTGCTCCCGGCCCTGAA--GCGTCGGGCAGCCGCGCTCACTGCTGGGCCGGTCAG--------AGGCCTGGAGCCCTCGGCTGGAGCCTCAGCTTCGCAAGTCAGCTACCTTGGGACCTCTAGGATC---TTCCGACATCCCAAAGCTGTCTTCCCGTACCGCGGAGCCCGGAAGGGGCTGTACTTTTTCGGCC------------TCTAAGCACTACGGTGGCCGAGCGAGTTCAAACCTCGCGGAACCATACCTGAAAACTCGGGGTAATTCTTTTTTCTTCATTTCGCCTCTGTCCAGTTTCTCTGACGCCCCCTGATGGTCAGTCTGTGAGTGCTTCGCTCACGcattcattcaacaagtgaaattaatttaatggatgcctaatgtgtgctcattgctttccgtccct-gggatatagcagaggacaaatcaaaagttccttaccaaatttacattttgcggtgggggagggacaggatacataataaagaaagtatggaaattttatagagccaaaaactatacaaagtaagggaggaat-----gaaatTCTATTTCAGATTGGAAGATCGGGTCCATGCTCATAAAACATATTAGC s canFam2.chr12 3478659 1081 + 75515492 tgcaaaaactaagatcccaccccaaacctatcgaatctggatccacattaaaacaagGGCCT---------ATTAA-AGTTCGTGAAACACTGCTCTACAGCACCTAACGG---------------TCCTTGAACTTCTCCCCAGAGCTGCACGTCCAGCACCTAGTACAGTACCCAGGCGACAACGGATAAAAGCTAGGTGCTGGTGTAACCGAGCTTACTTAATTCCCCCAAGGACAGTTAGCCTAGCCTCACCTGGATAGACAACCTGGGgccccgcccccgctccacctgctctcccgccgcgcccacgccgggccccgccccgccccTGCAGACACCTTGGTCCAGAGTCTCAAGGCGAAGTCGCGAGCCGGTCCGCTGAGGTCCAGAGTATCGGTGTCTCGCAGGCGCTGTACGAAGTCCTCGGCCGAGGCGCATCGCTGCGCGGTACCGATCAAAAACTGGGCTACGTGCCGCTCGCTCAGCCCCAGCACCGAGTGCAGCTCGTCCTGCACCCAGCGCTCCAGCCCAGCCGGCGTCGCCATGGTGACCCACGCTGCCCGGTTCCTGGCCCTGAACTATGTCGAGTAAACACGCTGGCGGCTGGGCTCGTCGGAGGCCTGCAGGCCTGGAGCCCTGGACTGGAGTCCCAGCTCCGCAAAGGACCTGCCTTTGACCCTTGGGTCTCGGTTTCCCACAGCCCCAAACCGTCTTCTCGGACCGCAGAAGCCGGAAACGACTAGTCGTTTCCGGCCAGTCGTTTCCGGCCTGTGCACTACGGCGGCCGAGCGAAGTCAAACCTCGCGGAACCG---CCGAAC-----GGGTGAGACGTTTCGTTTC----CGTTTCCACCAAGTCTTTCTGTCGCCCTCTGATGGTCAGTCTGTGGATACCTCGCTCactcattcattcaacaaatg----------------------ctgtgtgctaagcagttttagttgctggggatgtggcaaattatcagacaaaaatcccttactgaa------------ggagggggagg--caaggtagataataaataaaGTATG-----------GGGCCAAAAATAATGCAAGATTTGTGTGTGGTTTGGGGAGGTTATATTTCAAATTGAAAGGCTAGGTCCCTGCTGATGAAA---ATTAGC a score=3536 s hg19.chr6_ssto_hap7 1973812 83 + 4928567 GTGACCGTTGCTAGGACTGGTTTGCCTGCAGCAGGAGTGAAGACAGGTCAGGTATAAGGGAAGACCTCTAGGCAGGAAGAAAC s canFam2.chr12 3479755 81 + 75515492 GTGACGTTTGCTCGTGCCAG--TACCTGTGGCAAGAACGAATACACGTTAGACACAAGCGAGGACCTCCAAGCAGCAAGAAAC a score=5320 s hg19.chr6_ssto_hap7 1973928 92 + 4928567 CTCCAAACTAAGGAACAGGCAAACTGTGTTCTGCATTTTTGCTTAACAGCTTGAGAAAATCACTGGTGGCTGCTTATTTAAAAGTAAGCAAg s canFam2.chr12 3480044 89 + 75515492 CTCCGATCTCAGGAATGTGTAAACTGTGTTCTGCATTTTG--TTAACAGCTTGAGAAATTCACTGGCGG-TGCTTATTCAAAAATAAGCAGA a score=2031 s hg19.chr6_ssto_hap7 1974635 146 + 4928567 GCTGAATTTGTTACTCGATGCTCTGCTGTCTGATTTGTTTGATCCTGCATCATACTTTTGTGATTAATTGCAGTTACCAGGCACTACTGTTAGGAAATGAAACATTGTTCTTATTAATAGCCACAAGTGGATCTACATCACTGACt s canFam2.chr15 27750731 135 - 67211953 TCATAATTTGTTAGCTGGTGCTCT-CTTTTTAATCT--CTGACACCAGTTCATGCTTCCATG-TTAACTGT------CAGACACAATCTTTGATGCATAAAACCCTATTACT-CTATCAGCCACAGATATAGTCATAGCATTAACT a score=22269 s hg19.chr6_ssto_hap7 1975089 510 + 4928567 TGACCTCTTGAATGCATTGTTTTCTGTTTCTGAGATGGACTGTGAGCACCCCTGGCACCTCGGAGCTTCCTAACTCTGTTTTCCTGGGTCACAACTGGAAACTTTTTAAGACCTTTACCTAACAGGCTACTAATATAATCATTCTGTTTCCTTCCCTACCCAGACCTTCTCTGAACTGGCTGAGTCTTTTGACACCTGGCTTGTTCTCTTGCTAGTAAATTGAAAACCTTTGGCGTATGCTTAAGTTCAATTTGTCTCATATATTTTGTTTTATAGTAAAGGTGTGGGGCCTCCTCTGACCAGTCTGAGAGGAGCAACTTGTAGTGGTAGAAGGACTATAACTATTCAACCATATCTTTGTTAGCCTGGAGAGCTAACAACAAACAAACAAATTTTCCTGATGAGTAAAATATTGATG----TTCCACATTTGTATAAGAT----ATTCTTTGAAATTGGAAAATTCCAAATATCAACTACA--TGGGCACCAAAGCCATGCACTATCAAGATGGTTTTT s canFam2.chr12 3480542 486 + 75515492 TGGCTTCTTAGATGCATTGTTTTCTGTTTCTGAGGTGGACTGTGGGCACCCCTGGCGTCTCAGAGCTTCCTGCCTCTGGTTTCCTGGGTCACAACTA--------TTAGGGTCTTTATTTAATTAGCTACGAGTATAAGCAT--TGTTTCCCTCCATAC--------TCTCTAAACTGGCTTATTGTTTTAACACCTTTGTTGTTCCTTTGCTAGTAAGTTAAAGA-CTTTGGTATTCGTTTAAGGTCGGTTTGTCT----TATTTTGTATT-TAGTAAAAG---GGGGTCTCCTCTGACTAAGCTGAGAAAATT--CCTGTAGTGGT---AGGACTATAACTACTCAAACATGTCTTTACTACCCTAGCAAACTGGAAAAAAAAAAAAAAA-ATACCTGATAAGTAAACTATAGATGTGCCTGCCACATATGTAGAAGATAGAAATTCTTTGAAATGGGAAAATCTCTCA-ATTAACTATACTTGGGCAACAAAGCAATGAAATATCAATGTTTTTTTt a score=2410 s hg19.chr6_ssto_hap7 1975902 37 + 4928567 TAGGCCTTTAACGATATAAAATCCATTGTCTATCAGA s canFam2.chr12 3481415 37 + 75515492 TAAACCTTTAGAGATATAAAACCCATTGTTTAACAGA a score=9998 s hg19.chr6_ssto_hap7 1975968 292 + 4928567 GTACATACTTACTTCATTTTGCAGCAATTTCAGATTTAGTATTCGTAGCCCCAGCTCTTTAAGTAAGTATCCCTGGATTAGCCACATGGGTTGTGTCATACACTACCTAGCTGCCTTCATGGCAGCAGGCTTCTGAATACTAGAACCCTTCAACTCAAAGTGTCCTCTGT--AATATTTTAACCCTTTTCTTCTATTCATTCATTTGTTGtcattcattctagaaataattccgt--gtctactag--------ttgacaggtac-aggatattgcagtgaatccagctgatgtagtcagccctc s canFam2.chr12 3481913 274 + 75515492 GGAAACATACACTATATTTTGCAGCAATTTTAGATTTATTATTTATGGTGCCAAGTCTTGGAGTAAAAGCCCCTAGATTAGCCA--------GTGTTACACACTAGCTAGCT----------------GCTTCTAAATACTGGAGTTCTTCAACTCAGAATGTCCTGTTTCCAATATTTTAGCTCTTTTCATCTATTCAT--GTTTGT--TCAGTCATTCTAGTAATAATTTTGCAAGTGTGCTAGGGATAATTTTGTGAGGTATGGGGATGCTTCATTAAACCCAAC---TACAGTCTGCCCTT a score=61381 s hg19.chr6_ssto_hap7 1976260 1380 + 4928567 atggcacttccagtctagtggACACTTCAACTGCCCTTTCTCA--------TGTCACCTGCTTGTCCTGCGTGAAACCCACGTGCAGCT-TCCCAGACCCCTTTTGACATGTCAGTGCCGAGTTCCTGGTTCATCCCCCATCATTTTCCTCTCCCCC--------AGCCAC--------------------------------------------------CAGAGCCTCCCC--TCACATACCCTTTTTTTTTCCCAAAGAAGGAGA---AGCAGACGAGTTGAAGAGAACTCCATTTTATTATGGAAAG-TTAAAAAACAAACAAAACAAAACAGGCAATTGATAAAGGCGGCACAATGGGGAAGGAGAGGTGAGGTGTCTCCTTAGCCACCCGACACCATCT--CAATTCAGTTCAATTGTGAACCACTAGGAGAAACAGAATTAAATAACTATCAAGGGGTACAGAGTTAAGAGTTCCAGCCTTCCCTCTTGGGGAAAACTAAGGCAAAGTAATACTGAGAAAAAGTGGAGGAAGCCACACCTTCAGGTCACTCCAATGAGGAGACTGGAGG-GGACAGAGGAGAGAATTCCACGCAGACACAGCAAGTAAGCGTGGCTTGTAAACCTGGGACTTTGGCAGGTGGGGCTGGGAGCTGATGGAATTTGTAAACCAGGCT-GTGGTCAAGGGAGGAGGCAGGAGCTGTAAACAAAGGGGCAGTGACCTAGGAAAT--GAAGGAGATGTGCCTATAAATGGAGTGGGGTCTGGGCCTCCCAGAGAGACGAGTGCTTAAATCCCGAGAGTCCCCACGGGATGGTGGGG-----AGGAAGGCTGTGGGGAGAGTGTACCCTGCCATGGGGGGCAGGTGCTCCATCTCCACCCTCCAGGGAGTTCTGTGCCCCTTCTCAGGACTTGGCGCTCACTCTTGGATGACCTAGGATG-CACCAGCACGTTTAACCCCACCCACACCAGGGACTTTGGATTAGGGTAGAAATTGGGCAATTGGCTCTGCCCCCAGAAACAGGGTGGGGAAAGCAAGTTACAAGATGTTGGTTGCCCTTCCCTGCCAGGCTCATTATCAGGGTCTGTCTGCCCTGAATCTTCCGGGCTCCAGGATCTTCAGTTATAAGAAGGAGGGAGGTATAT-----CCCTATGTTGGAAGATGGTCACCGCCGGCAGGACTCATCTGTGGGAGAGGGGGCAATAAT-GTTAGAGAATGAGTGAGAGCCTCTGCCTTCTGCCCACCCTTCCCCCCCACACAAATTGAAGGGCAGTTGGCATGCAGGAAGTCCTATAATATCTTCCATATCTAAAGCATGTTACCACCAGTAACCACATCCATCACTCATTTAGCTCGGACTCTGTGCCAGGCATCCTTATAA-CTGTTTAATCTCACCATAACTCCAGGAGAGATTAAGTAATATGATATCCAGCTGTGGCT-CTTGGTGCTTCACAAA s canFam2.chr12 3482379 1397 + 75515492 ATGGCACTTCCAGTTTAGTGGATTCTTT--CTGTCCTTCCTTAAACTGGTCCTTTTCCTGCCACTCCTTCAAGCAACAGCTACAGGGCTCTCCCAGAGCCCTTTCTTCATGTCAATGCTGAGTTCCTGTTTCAT-CTCCATCA----CCCCACCGCCGCAGCTGTGGCCACTACCTCTTCATGGCCAATAGGAAGATGGGAGCGGCTTGGAATGAGGAACACAGAGCCTCCCCCACCCCATACC------TTTTTCTAAAGAAGGAAAAGCAGCAGGAGAGTTGGAGAGATCTCCGTTTTATTATGGAAAACTTAAAAAAC----------AAACAGGCAGTTGATAAGGAAGGAGAAATGGGGGAGAAGGGTTGAGGGGCCTTGTTAGTCACCCCACACCCACTTGCAATTCAATTAAATTGTGAACCACTGGAAGGAACAGAATTAAATAATGAGGTGGGGGTACAGGGTTAAAATCCCCAGCTCTCCTTCTTGAGGACAACTGAGGTACAGTAATACTGAGCAAAAGTGGAGGAAGCCACACCCCCA-------------AAGAGACAAAGGGCGGGAGGGGGGGGGTGTTCCATATGGACTCAACAGTTAGGTGT-GCTTGTAAACCTGGGACTTCGGCAGGTGGGGCTGGGAGCTAATGGGATTTGTAAACCAGGCTGGTGGTCAGGGGAGGAGGCAGGAGGTATAAGCAAGGGGGCAATGCCCTAAGGAATACGAAGGAGAGGGGCCTGTAAATGGAATGGGG--CAGGCTGTCCAG---GATGAGTGCTTAAATCCTCAGAGCCCCCACGGGGTGGTGGGGAGTCAAGGAAGGCTGAAGGGAGAGTGTG----GAGATGGAGG--AGGTGCTACACCCCAGCC--CCAGTGAGCCCTGTGATCCTCCCCAGGACGTGATGCTCATTCTTAATTCACCTAGGATGCCACCAGCATGTCTGA-CACACTCACACCAGGGATCTTTGGTGAGGGTGGAAATTGGGTGACTAGCTCTGCTCCCATAAACAGGATGAGGAAAGAAGGTTGGAAGATGTTGGTTGCCCCTCACTGCCAAGCTCATTTTCAGGGTCTCTCTGTTCTCAATCTTCTGGGCTCCAGGATCTTCAATTCT--GGAAAAGGGGGGTATAGACAGACCCTCTGTTGAAGGAGGGTCACCTCCGGCAGGACTCATCTGTGGGAGAGGAGGCAGTAATGGTTACAGAGTGAGTGAGGGCCTCTGCCAT----CCACCGTCCCCACTTACTC--------------TCTACACTGAGCAAGTC----AGTGTTTTCCATGCCCAGCACCTGCTCCTA-CAGTACCAGCAGTCATTGTTCACCTAGCTCGCATCCTGTGCCAGGCATTCTTACAACCTGTTTAATCACATAGTAGCACCAGAGGAGATTAAGTAATTTGATGGCCAGCCATAGTTACAGGGTGCCTCGTAAA a score=68711 s hg19.chr6_ssto_hap7 1978894 1724 + 4928567 aggaggtagttattattaacttcatttcataaataataaactaaagcaagagatcagatggtttccctgagatcaca--caattaaagagacaagctggaattccaactcaggcctgtc-gaccc--accctgtgattttgaccaGATTACAGCACTCAGGAAGAGTTCTCGTTTTGAAACCTGAAGACTCAATGTGTacttcactgccggggacctcagtttgcccatctgttaaaggagcatgttg-aaccagaggacccgcc-aagccccttccgagtgcctacatGTAATCCTCCCTCCTCTCTCCTGGACCACAGCGCCCGCTCT-GACAGCAGGGGGCGCCCTCGGGCCGGCGGAGCCTCCGCTTACCCACAATCAGGGCCTTGGTGCGCAGCCCGCCCTGGAGCTCTGGCTGCAGCAGCAGCAGCTCTTCCTCATCCTCTTCGTCGTCG---------------GGTTGGGCTGCTGGAGGGTTGGGGGCACTGGGGACCTCAGGCTCCGGGCCCAGCTCCTCCAGTACCGAACTCTCGGAGGGGTATTGGTACGTGGTCTCCAGGGCTGTCTCGCTGAAGGAGATCTTAAGCTGAAGGAGGGAGAAAAAGGGGGCAGGAGGC--AAGGTCAGCAGGGGAGAAGCCCGCGGGGGTTGAGGGAGAGAAAGCGGGGGCGGGGGGGGCGGAGTCTGCAAGGGAGCAGGTGGGACTGGCGGAACGTGGGGGTGGGGGCTGGACTCAGGTGCCCCACTCACTCTCCCCATCCACTCTG------GGATCCAGTTTTCCTTTCCATACTGGCTCTCCAATTCTAGAGTTTCCCTCTTCGATCATATCATTT-CAAAACATCAGACTTTgccctgtacgttggcaggggcttgggaggcagaagtgaataatataagaccaaggtccctgctatttcgagtgtgggaggcagaggggtaaaaagaaattaaaatacatggcgataagtcttgtgatcagaaccgagtctttgggcacc-ttgggggcaatcgagtgaacttccc--agaggagCCCAGCAGACTGGCCAGTGGGGAAAGAACTGGCTGGGGAGCGAGTCTCAGACAAAAGCAA-------------GGTTTTCATACCCACAGCCCCTTGCTGTCCTATGCAAAACCCAGGACCCTGGGCACCTGTTCCCTCCTACTCTCCTCATTCCTCTCCT-------------ATCCATAGCAAAGGGAGTCTAGGGCCTAGGAAGAGATGGGAGATGAACAGAAAGGCCGAGAGGAACCAAGAGACTCCAGCAACACACAGGGGAAAGATGAGCCGCTGACACCCTGAA------GGCTGGGGGAGATGACAAGGGCAGAAAGGAAAGTCCACACAAACCTGGGGTGGGGGTCCACAGTGTGCCCAAAGGGACAGGCACAGAGACAAA--ATACCAGACAGGGCACAGAAAACCCTTGGTAATCACACTGTCCCAAGAGCAGGCGAGTCCCAGCTGTTCTCACTGCCTTTCTACCCTT-CCCCTTTGCCCTATTAAGAAGCTCAGGG-GGAAGGGGCAGGGTGGGATTAAGTCTAGGAGCCAAAGGGATTAGGGAGAC-AGCAGGAGGATTCCATATGAACTACTTGGAAAGGTCCAAATGATCTACTCAGGCCTTCCCTGGCATCTGTTTGGGAAGACTTGGGGTCAGCCGTACATCCCTGAGTCCCCTAATGAACTGAGGTATGAAAAGAGAGAAGCCAGAAGGGTGGCTGGGCAGGTGGTTGTTAAGAGCTGCATCAA s canFam2.chr12 3483803 1639 + 75515492 aggcggtggttattattaaccccatgtcataattaataaactgaggccagagatcaggtgatttcctggaggttacaccccatgtaagaaacaagacggaaatcaaatgcaggcctgtctgacccaaacccggtgtttttAAGCACACGAGAGTGCTCAGAAGGGGTCCTGGTTCTGAAATCTGGAGACCCCTTGTGCAT-----------GCACTTCCACTTCCCCATCTG-TGAAGGAGAGCGGTGCGCCCGGAGGTCCTGCTGGAGGTCCTGCC---TGCCCAGACTCACGCCGCCC-CTTCCCTCCCAGGGCGCAGTGTCCGCCCTGGACGCCAGGGGGCGCCCTCGGACCGGCGGAGCCTCCGCTCACCCACGATCAGGGCCTTGGTGCGCAGGCCGCCCCGGAGCTCCCGCTGCAGCAGCAGCAGCTCCtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcAGGCTGGGCCGCCGGGGGGCTGGGGGCACCGGGAGCCTCAGGATCCGGGCCCAAGTCCTCCAGCACCGAGCTCTCCGAGGGGTACTGGTACGTGGTCTCCAGTGCTGTCTCGCTGAAGGAGATCTTGAGCT-AGGGTGGGAGAGAAGGG-----GGAGGCCGAAGTTCAGCCCGGGAGGCGCCCGCCCAG---------GGGAACGCG--------------------TGCAAGG-------------CGGAGGGAAGCCGGAGCGGAG------------------------------CATCCACCCGGGGCCGCGGGGCCGGTTTTCCTTCTGATACAGGCCCTCCAATTCCAGATTTTCCCTCTTCTATCATAGCATTTCCAAAACATCAGACTCCGCACTGCCTG-----------------GGCAGAGGGGAGCAATACAGGACTCGGGTTCCTACTCTTTAGACTGTGGGTGGTGGGAGGGTAAAAAGAAATGAAAAAATAT-------ACTCCTGTAATCAGAGCTGAATCCTTAGGCACCGTTGAGGGCAATCAGGAAGGCTTCCCGGAGAGGAG---GGAAGTTTGACCTGGCAGGAAATAGCTGACTGGACA--CAGTCCCAGGCAGAAGCAAAGACAAGCACATTGGTTTCCGCACCGTAGGCCCCCTGGGGTGCC-TGGGAAACCCAGCAGCCTGGATA-CTGTGCCCTCCTGCTCCCCTCACTCTTCTCCTAGAGCCCGAGTGGACTCACAACAAACTGGGGCTAGGGCCTGGGAGGGGAGAAGAGACCTACCGAGAGGCCCAGAGGAAACAAGACTCTACCCTGACACACAGGAG--AGAAGGGCCCTTGAGTCCCTGCAAGGCCCAGCTTGGGGAGGTGGC-AGGGCAGAGAGGAAAGTCCATGCAAACACAGGTTGGGG---TGGAGAATGCATGCACAGACAGGCGAAGAGCCAGAGGGGACCTGAGAGG--ACAGAAAATCCTTCACAAACACGCTGTCCCCAGAGCAGGCCAGCTCCAGCTGTCCTCACTGCCTTTCTACCCTTCCCCCTTTGCCCTTCTAAGAAGCTCAGGGAGGCAGGGGCAGAGTGGGATTAACTCTGGGAGCCAAAGCGATTAAGACGACAAACAGGAGGATTCCATGTGAACTACTTGGAAAGGTCCAGATCATCTACTCGGGCCTTCCCAAGTGCCTGTTGGGGGAGCCAGGGCTTGGGCCCTGCATCCTTGAG------------------------AAGACAGAAGCTGGGAGGGTGGCTGGACAGGTGGATGCTAAAGGCTAGATGGA a score=3541 s hg19.chr6_ssto_hap7 1980767 107 + 4928567 ATATGACACCTGGGTCCCCATGGGAAGGTAGAACTCAGGAACTGTATatgttactccttgttggctctgaaccctgcagtgtctccccatctcacttggagcaaaaa s canFam2.chr12 3485442 92 + 75515492 ATGTGAAACCTGGGTCCTCACAGGAAGCTGGAACTCAGAGGC----------Acc-----ttggctctggagctggcattggctcctcatctcagtggcaggcaaag a score=13421 s hg19.chr6_ssto_hap7 1981210 351 + 4928567 ccagagcctgaccaaagcctacagggtgct---cccagtatgccaccctccccttgcctctctggcctcttcctccactccagccacactggc----------cttggttccctccacgcactcctacctcaggaccagaacagtactagctattccttctgcctggaacactc--ccccaaaatatccccatggctctgaccctcctgatcaccctattttgaagtctccatattcactccccctacctcctgaccctctaagttcca------ctgttctatttttttttc------------------cataatcacttaccaccttctaacttactagataatttactaatatattatactcatgtctgCTGTTGAAAGGAGCTTG s canFam2.chr12 3485534 380 + 75515492 ccagagcctgactgaggcccacagggtactggagcccctgtgccgctcccgcctcacctctcaggcatctgtttccgctccagccaccctggtcagggctccacttggctcaccaggggcactcccatctcagggcc----tttcgctggctattcctcctgcctggaacactcttcccccaaatatccccatggctccctctctcCCAGTCACCTTAGTGAAAG---TTCACATTCACACCCCCAACCTTCTGGCCCTCTAGGTTCCACTTACCCTGTTCTAACCCACCCCCCCCCCCCCCACACACACACACAATTACTTACCACCTTCTAATGTACCAGGGAATTTAC--ATTTGTTATCCT-GGGTCTGCTGTCCATTAGAACGTG a score=69083 s hg19.chr6_ssto_hap7 1981881 1677 + 4928567 GAAGTTGGTACAATGCAAGAGGTTAGGGTTTGTTCAGACCTCACATGAGGTGCCATCAGAGGACCAATGCTGGGGAAACGATCTGCGGGTGGTCCAGCCTGTACACATTTGACCCCCAGTTCATGTCTGTGGAACTGCTGGTAGAATCTAGTGACAGCAGCCAGACTGCTtatatcccaagttctcagaagggaccgcttaggtttctgtaactgacagatttacccacatttctgggaacccatttttgttttcttctcatatcctcttttggaataataacctctgtactttattttctactctg-aaaatgacttattttatttgctctCGGTCTATGTTTATATCTCCCCCCCTACCCTGCCTGTCTCCTCACCCCC---------------CACCAACTTCTGACTGGGCTTCTCAGAAATGCACAGCCTGCATG------------GGAGTGGGGGGGTAGAGA---GGGGGTGACTCACTCGCTCCTCTCCCATCAGCTATATAAGGTCACAATGGGGCTGG----------------TCTCTCAGCCCAACCAAGAGGCCTCTGGGGTAGGGCACCAGCCACAGCCATCCCCTGGGCTCCAGTGGCAGGGCTGGGATTTCTCTCCTGATGGCAGGGATAAATTTGATGGAATTAGCCTGCAAAC--GAGTTATTTAGGGAAG---------GTGAAGCGGGGGTTGGTGGCAGGGTCCTCCTATCTCCTATTCCTGAGCCAGTGTGTTGCAGCAGAGCTGGGACAAGGCAC-CCAGTCCCTGAAGAACAGGTTGCTGACAGGGGGTAG------------AGGGTGGAGGGTGAGGCGTCTGGGTCAGAGGAACTCTGTGCTGCCTCCTCCCCACCCCCACCCAAGCAGCGGCT-GCTTCCTTATTCTCTCACCACATCCTGAGCACAGATCTGGCAGGCCCAGGGCCCAGGGCCCAGGGTTCCCCACTCAGCCCCACCAGCCTTCCGGCCCCCACCCCAGGCTTCCTGTTTGGGCGATCTGCTTCCGGCTCCCCTGCTCTCTGGCCTAGGTATGGTCACCAGCACAGGTCCTGCCCTGCACTTGCTTCCTGGCTCCCCTGGGATGCTCCCTGGGCTTTGGGCCCCAAAGCTTCATGCTTCCCTCTGCTCATTCTTCCCCAGAGGCACAAGCCTCTCTCAGTAGGAAGTGACTTTTCTGAACACCTCACCCGGGTAGCATTTCCGGACTTCTGTTTTTTTCATCTGCCCAGCCCTGAGGGGAACAGGCTGGTAGCAGTCAGAGGGCTGAGGGTAGGTTCCCAAGAACCATGGCTTAGAGGTGGGAGCTTACGCTTCATGTGAAGATGAATTGGGGGATCAAATGAACCCCCCTCCACCCAAGGCTTAACCCGTATCTTTAGTCCCTGTGGTTCCCCACTGACACTGAGGACACAAAAAAATCAAATCTGAGGATGTTAACACATGGGATGAGAATG--AGACT-----GGGCTTCCCAGGCTCTGGGGAGATGTGTGTGACTGGAGGGACTTCCTAAGTCTGAGATGTCTGAGTGTGGGA-CCTCTGTCTCCCTAGAGATTTTCAAGCTGGAAACAGATGGATGTGCACAGGGAAGAAGTGAGGCCAGGGCCAGGGGGAGTCATCCTGGCTGCCCCCACTTTCCTGCA---GGTCTTTGTTGCAAGTCTAACCTCTGACCCTCTGCTGGCCTCAGCCCCAACCCCTGTCCAGAACTCCCACTGTGCTCCCTG s canFam2.chr12 3485914 1583 + 75515492 GAAGTTGCCACAGTGAGTAAGG--AAGGGCTGCTCCAACCTCAGATGTGGTCCC--CAGAGACCCAA---------------CTGTGGGAGGTACA--------------------CAGTC--TGTCTGTGGAACTGCTGGTAGACACGAGGGACAGCAACCAGACCCCTTACGTCCCAGCTTTTCAAAAAGGACCACTTCTGGTTCCGTTACTGACAGATTTACCTAAACTCCTGGGGACCCA--CTTGTTTTCTTTTCACATCCCCTTTTGGGACAACAAGCTCTGTAGTTTATTATCCATTCTGAAAAAAGATTCATTTTATTTGTTCTGAGTC-ATGTTTGTCTCTCTTCCCCAACCCTTTTTCTCTCCTCACCCCCCTCCCCTCACCCCTGCCCCAACTTCTGACTGGGCTCCTCAGGAATGCACAGCCTGCATGGGAGCTGAGGGTGGAGTGGGGCGGGAAACAGAGGGGGGTGATTCACTTGTTCCTCTCCCATCAGCTATATAAAGTCACAAGGGGGCCAGAGAGGGGAGGAGCCCAGCTCTCAGC----TAGAAGGGGCTCTCAGAAAGGACACCAGCCACAG-------------------GGCAGGGCTGGGATTTCTGTCCTG-TGGCAAGGATGTGTTTGATGACATTAGCTTGCAAACAGGAGTAATTTAGGGAAGTGGCGGGGTGGGTAGGGTGGGGTGTGTGTGGGGTCCT--------CTGGTTCCGAGCTAGTGGGTCGGGTCAGAGCTGGGTCAACGCACACCAGTCTGTGCTGAGCAGGGTGCAGAGAGAGGGAAGGCAGCCTGACGTGGGGTGGAGGGGGAGGTGTCTGGGTCTAGAGAACTCTGTGCTG---CTTCCCCACCCCCACTCCCAGAGCAGCTCGCTTCCTTATTCTCTCACCACATCCTGAG--CAGTTCTGGCAGGCCCATGGCCCAGCAT------TTACCCACTCAGCCCTACCAGCCTTCCCGCCCCCACTCCAGGCTTCCTGTTTGGGTGATCTGCTTCCTGCTCCCCTTCTCCCTCACCTAGGTATGGTCACTACCACAGGTTCTGCCCTGCTCTCATAT--------------------------------GGTCCCCAAACTCCAGGCCTCCCTCTGCTT-TTCCTCCCCAAAGGCAGAGGCCAACCTCAATAGGAAGTCACTTGTTTGAACGCCTCATCCAGGCAG---TTCCTGACCTAC-TTCCTCACATCTGCCCAGCCCAGGAAAGAAGGGGCTGGTTGCAGCCAGAGTGCTCAGGATAGA--CTCAGGTACCTTGGCTCAGGGATGGGAGCTTGAGCTTCATGTG-AGATGAACCGGGGGAGCAAGTGACCTGC----------AAGCTTCATCTAGGTCGTTGGTCCCTGTGGTTTCCCACTGACCAGGGACACACAAAAGAACCAAATCTGAGGATGT---CAGAGGAGATGAGGACTGCAGACTAGGAAGGGCTTCCTGGTCTCTGGGGAGATGTGTTTG---------------------------------GTGCAGGAGCCTCTCTCTCCTTAGACATTTTCAAACTGGAAACTG--GGTGGTGTGTGAGGAAGGGACTGGGCTGAAGCCAGGGCAAG-AAGCCTGGCTGATCCCAC-TTCCTGCACTTCGTCCTTTTTCCAGTTTTAACCTCTGATCCTCTGCTGGCTTCAGCCCCCACCCCTGTCCCCAACTTCCATTGTATTCCCTG a score=7972 s hg19.chr6_ssto_hap7 1998872 125 + 4928567 tttttgaggaaccatcaaactgtttaccacagaggctgaaccatttaacattcctaccagcaatgtataa---ggattctaatttctccacatccttgtaatcaaccaacttt--taaaatttAAATCTg s canFam2.chr12 3497519 130 + 75515492 tttttgagaaactgtcaggttgtttaccacagtagctgatccattttatattcctaccaggaatgtataataagggttataatttctccatatcattgTAATCAACCAACTTTCttaaaatttaaattta a score=18219 s hg19.chr6_ssto_hap7 1999873 396 + 4928567 AAAACTACACTACACCATAAGGCACAGAGTGAATATTTATTTATCACagaggtcaagccgaagctctaattttataaatcctggaaaagctggccagaaaagtacagagacttgcccaaagtcaAAGCTAAAGA-TGCTTCCA----GAGGCCAGGAGAGAAGAAAATGTTTTAGTAGCACTCCATAACTGGACCCTCAAATCTACTCACTCCAAGCATCCCTTCAAGTTCCTGACCCCAAA--------------------------GTAAGAATCTCAGTAAGAAAAAAATAGAGATGGTTTCCAAATAGGAGGTAGGACACCATGAGTGGCATCGAGCAATAACTGCAACAGTCTGGCTAAAGATAGCTGCCACTTATGACATCTGAGCATGAAACTAGCTAATTTTAAAATGGCCATTTAATA s canFam2.chr12 3497685 400 + 75515492 AAAACCGCACTACACCATAAGGCACAGAGTGAATATTTATTTATCA--GACGTTAAACCTAAGCT--AATTTTGTAAACACTGGAAAAGCAGGCCAGAAAAGTGCAGAGATTTGCTCAAAGTCAAAGCTAAAGAACGCTTCTAACACGATGG-AGGAGAAAGGAAAATATTCTAG-AGGATTCCATAACTCCAACCTCAAATTTACTCACTCCCAGCATCCCTTCAAGTTCCTGACACTAAAACTGTTCCACTATCTTTCAGAGGAGAGTAAGGATCCCAGTAAGAGGAAAA--GAAGTGGCTTCCAAACAGGAGGTAGGATACTGTGTCTG-CCCAGAACAGTAAGTACATCAGTTCTGCTAA-----------------GATATCTGAGTATGGTACCACCCAACCCTAAG-TGACCACTTAAGA a score=24956 s hg19.chr6_ssto_hap7 2000375 453 + 4928567 aaCCTGTGGCTTCCAAATCCCTTATCTTTTCATTTATTCATAAAGATTTCTGGTCCCACCCATGTTCCAGGACAAGTTGTATCAATATACCCCAATCCTTTCTAACGCCCTGAGTTCTTTCTTCCACATAT----------CTTCTAATTCGTGGTCTGGGAGGGAAAAGGGTAGTGGAGT-----TCTCAGGTGGATGACATCTCCAAAGGGGAGAGGACAAAGGCCTCTGGCTTGGCTTCCTGCTTCAGCACTCCAGTCAGCAGGAACTCAGGCGAGAGGAGGGGCAGCCCAACCCGTAGTGGAATGGAGCAATGAGGGAAGTCCTGAGGGCATGTGATCACAACTCTCTGAGGCTGGGGAAGACAGAGCAAAGGCAAAATCAGG--TGAAAAAGAATCCTAGAAATGGGTTCAGGACCCACTAACCAGTCTTACCATCACTAAAATAATACCTCCTAATATGAAGCC s canFam2.chr12 3498085 448 + 75515492 AATCTGTGGCTCCAGACCTCCCTATCTGTT-GTTTACCCATAA-------------------TATTCCAAGATAAGTCAGGTCAAGTTACCCCAATCCTCTCTAAAGCCCTAGGTTCTTTCTTCCAAATCTTACTCTAACACTTTTATTCACTGGTCTGGGAGGGAAAAGAGTATTGTAGTGACATTTTCAGGAGGATGACATTTCCAAAGTGGAGAAGATGAACGCCTCTGGCTTGGCTTCCTGCTTTAGCACTCCTGTTAGCAGGAACTCAGGTGAGAGGATGGGCAGCCCAATCCGAAAAGGAATAGAGCATCGAGGGAAGTCCTGGGAGCATGTAATCACAACTCTCTGAGGCTGGGGAA-AGACAGCAAAGACAAAGTCAGGGGTGAAAAAGAATTCTAGGAATAGGTTCAGAACCCACGAATCAGTTTCAGCATCACTGAAATAG-ACTCCCTGATATGAAGCA a score=2830 s hg19.chr6_ssto_hap7 2001505 49 + 4928567 aaagatgaacctgaatttattcaagcttttacaattatctgcaatttcc s canFam2.chr12 3498557 49 + 75515492 AAAGCCAAACCTGAATTTATTCAAGCttttatttttatttaaaattttt a score=20096 s hg19.chr6_ssto_hap7 2001554 431 + 4928567 aggaaatatggagtacagaggaacaagataaattatatgacaaggaggcaaacccaaaattccagactgaggaacattctaaaggacaagtgacccagcttctgcaggaaatagatggcataaaaaaag----------ctgggtgggttaag--------ggatgctctagagtaaagataattaagaagata-ataggtgtggcagtatgtggaccttatttgaatcctgatttgaacaactgtatagagacatttttcagacaatgggagaaattttattaatggagtgtgagcaaatgaccaataaactactgttaattttgcttaggatcaataatggcattgtgattatga-aataaaatgtacgta-tttcttagagatatata-tttaagtatgtaggaagaaataatataatattggcagtttgctttaaaatatttcagcaaa s canFam2.chr12 3498812 447 + 75515492 agtttataaggaatgtaaaagaacaagataaatgacacagcatgggggcaaacagtaaaacccagac--gggaacattctaaaaaacagctgacctagtttctgcaggaagtcaatggaataaaaaaaaaaaaaaaagcctgggtgggttgggtggggggaagatcttctagagtgaaagagaataaagagatatgcaattgtggcaatacatagaccttgtttaaatcctgatttgaac---tgtaaggaga-actttttggccaactggagaaatctgactaatggagtatgagaaaatgactaagaagctattgttaattttgttatggatcaataattgcattgtcattacgttaaaaaaaagtacataatttcttagaaaaggatactttaagtatatagggggaaataatatgatgtatgcagtttcctttaaaatagttcagCAAg a score=1622 s hg19.chr6_ssto_hap7 2001999 58 + 4928567 aaaaagaaagaataaagaaaaataaaaagaaatgaaatacttcagcaaagaaaatcaa s canFam2.chr12 3499425 45 + 75515492 AAAAACAACAACTAaa-------------aaataaattagttcagcatagaaaaacaa a score=3180 s hg19.chr6_ssto_hap7 2002387 69 + 4928567 TAGATGGAGCAAATGTAGCATAATCTAAATTAAGCTGCTGCTGAATCTCGGTGATTGTTATATGGGGGT s canFam2.chr12 3499470 66 + 75515492 tacatgaagaaaatgtagcaaaatctaaacta---ccttgttaattctgagtgattgatatatggaggt a score=99322 s hg19.chr6_ssto_hap7 2002531 1710 + 4928567 ATTCCTTTCTGAACCTCCATTTTTTTCCCTCCAATCTTTGCCATTCCAGCCACCTCTTTAACTGCCACTGCCACCTCACCCAGACCCAGAACA-------TCCTAAGCATACCTTATAGGACCGAGGCATGCTGGGTAGGTATGTGCCTCCACAGCAGCTAATAATCTCTCCCATCTGAGGTGGTGGTGGCTGGACTCCAGGGGTCACATAGATCTCATAGCCCTAAGAGAAAGAAA-TGATGGAG-------ATG---GTATTG------------TAGATTGGGAAGCACTGGAGGGAGGGCTGAAGCACAGGTTAAAAGATAGCCTCTCACCTCTAGCAGCCTTCGCTCCCGAGCCCTGCTCAGTGCGTCTTGAAGGCTAAAGCCAAAGTTCTTCTCTTGCTCAGGGTCGGTCACCACATATTCATCCGGGGGTAAGAAGAAACCAGCCTTGCGGGACTAAGGACGGCAGCAGTCAGCATCAAAGCTCAGCCCAGCCCCTCAATCAGCTCTGCTGCCTAGCATTTAGAGAGAGCTCACAAAATGTCTTTTAAATCAATGCAGGCTTCTGGCTCAC-CAATGCCCCTGTCTTCCTGTAACGCCTCTTCCCTTCCACCACTTTCTAGGGCACTATATGAGCAGTCTT--GCCACTATATCGGTCTGTCATCATCCCTTGGCCTCTCACCTGATGCAGCCAGTCCAGGGACAGAATGGGGATTCCCCGCCCCAGGGCACACAGGAACTTGACTGTCCGGCGGATGCGATCAGTGACCAGGTGGGAAGCCTCTGCCGCTGAACCAGCCAGACTTCCCCCCAGTGCCAGCACAGCCCGCTCTCCCCGAGCATCCACCACTCCTGTGAAGAGCACCTGTGGAAGG-GTTGACCTGAGGTGGTTACGGCAACCCATGCCATCAGCACCCATCTCTACAATCCTCTAGGTCTCCTTGCATCCTCCCCTCATCTCTGTCTCCCACAAAGTCCCATGCCT-TTGTCTCTTACTTTGGGGGCTGTTGATTCTTGGTTAAGTTTGGTCCGTCGGAGGCTGCGGCTTGGTATTCTGTTGGGCTCCTCCTCTGCCTGGTCTCTCTTTCTCTTGCCTGGTTTTGGAGTCACGACATCCTGAGATTGAGAAAAATCTTGGTGGGAGTTTCAGAGCCCTGAAGTCATTTTTCCCAGCTTTGTGGTCCCAACCCTCTCCTCACCTCTTCCTTCCCTGGCTTCTCTGCAGTATCTTCTTCCTCTTCCTTGATAATCACTGTCTTCTGGGAGACTTCCCCTCTTTGGGGCTGTTTTTGATGTGGTGGTGAATCCATGGTAGCTAAAGACCTCTTGCGGCTTTGAGAGGCCTTAGGCTGGAGCTCCGGGGTGAACCTAGATCTACCTGCTGGTTCCACCTTTTGGATCTGGGAGGCATGAATTGGTGTCTCAAGAAGCTGGGGAGAGGCAGGCTCAGGAATGGCTGTAAGGGATTCAGCTGCTCTCACTGCTCCCCATCTTTGGTTCCTTGAGGCCTGGGATTTAGGTTCCAAGGGTGCAGAGCAAGGCTTATGGTCAATGGGAGCTGCGAGGGAGCCAGGGTTCCCAGCGGCTCTCTGCCTCTTGATGCAACTGGGTTGAGTAATAGGCTCAGGGGAAATAGGCTGGTCTGTGGTGACAGGAGATTGGAATTCAGGGGTGGTAGGAACCGGCATAGCTCTTACTGTGGAAGACCTCAGTGTTTTGCTCTGACCACCCTGAGC s canFam2.chr12 3499595 1705 + 75515492 AATCCACTTGGAATCAACAGACTTTTCCTTC-----------ATTCC---TATCCCTTTACATACTACAG--GGCTCCCTTATCCCCTCAATACTTGTGTTCCCACCCATACCTTATAAGACCGGGGCATGCTGGGTAGTACAGTGCCTCCACAGCAGCTGATGATCTCTCCCATCTGAGGTGGTGGTGGCTGGACTCCTGGAGTCACATGGATCTCATAGCCCTAAGAGAAAGAAAATGGTAGAGGCCACAGATGTATGCACTGAGAGGCTATGAATAGCTGGGGAACCTCAGGAGGGAGGGTTGGAGCATGGGGCACAAGACAGCCTCCTACCTCCAGCAACCTTTGCTCCCGAGCCCGGCTCAGGGCATCTCGAAGGCTGAAGCCAAAGTTCTTCTCCTGCTCAGGATCAGTCACCACATATTCATCCGGGGGCAAAAAGCAACCAGCCTTGTGGGACTAAGGACAGTAGCAGTCAGCATCAAAGCTCAGCCCAGCTCACCACCCAGCTCTTCTACCTAGCATTTGGAGGGAACTTACAAAATGTTTTTTGAATTAA----GCTTTCTGCTTCACTCACCTCCCTTGTCTTCCTGGGCCCCTCCTTCCC--------CTTTCTAGGGCACCCTAAGAGTAGTTTTCTGCCATGGTACC--TCTTCTGTCATCTTCTAGCCTCTCACCTGGTGGAGCCAATCCAAGGAGAGGATGGGAATCCCCCGCCCCAGAGCACACAGGAACTTGACCGTACGGCGGACTCGATCAGTCACCAAGTGGGAAGCCTCTGCCACTGAGCTGGCCAGACTCCCCCCCAGGGCCAGCACTGCCCGCTCACCACGGGCATCCACCACTCCTGTGAAGAGAACCTGCGGAGGGAGTTAGCCTGAGCTGGACACAGCAACCCATGCCATCAGCGCCTGTTTC--CAAACCCGTTGGTATCCTCCCATCCTCCC---ACATCTGCCTCCCACCAAGCCCCATGCCCCTTCTCTCCTACTTTGGGGACTGTGGACTCTTGGTTAGGTTTGGTTCGTCTAAGACTGCGGCTTGGGATTCTCTTGGGCTCCTCCTCTGCTTGGTCTCTCTTTCTCTTGCCTGGTCCTGGAACCACTACATCCTGGGATTGAGAAAGATCTTGCTAGGAGTTTCGGAGCCTCCAAGCC--CTTTCCTAGCTTCAG---TCAGGCCCTGTCCTCACCTCCTCCTCCCTTGGCCTCTCCATTGGATCTTCTTCCTCCTCCTTGAGGAACACTGTCTCCTGGGTGACTTCTCCTCTTTGGTGCCGTTTTTGAGGTGGGGGTGAATCCACAGTAGCCAAAGGCCTCTTGTGGCTCTGAGAGGCCTTAGGTGGGGGCCCCAGGGTGAACTCCGATCTGCCTGCTGCCTCCAACTTGTGGATCTGGGTAGCATGAGTGGGGGCTTCAGGAAGCTGGGCAAAGGCCGGCTTGGGAATGGTCCTGAGGGACTCAACTGTTCTCACTGCTCTTTGTCTTTGGTTCCTTGAGGACCGAGATTTAGGTTCAGGGAGTGCAGAGTAGGGCTCACAGATAATGGGAGCTATAAGGGACTCATGGTTCCTAGTGGCCCTCAGCCTCCTGCTGCAATTGGCTTGAGAGATGGGCTCAGGGGGAATAGGCTGGTCTGTGGGGACAGAAGGCTGGAATTCAGGAGTGGTAAGAACTGGCACAGCACTTATTGTAGAAGACCTTAGCATCTTACCCTGACTTCCCTGAAC a score=7068 s hg19.chr6_ssto_hap7 2004247 123 + 4928567 CTCAGGGGTGACGGACTGGTCTGTGGGGGTAAAAGGCTCAAGATCAGAGGCTGCTGGTTCAACTGGTTTGGGAGTCTTGACAGAGGACCTATTTGTCTTTCTCCTAGTGGCCCTAGATGTGAG s canFam2.chr12 3501300 123 + 75515492 CTTGGGGGAGAACAGTTGATCTGTAGGGGTGACAGATTCAAGATCAGGGGCTGTGGGTTCAATTGGCTGGGGCATCTTGACAAAGGACCTATGTGTCCTGCCCCGAGTGGCCCGAGATGTGGG a score=55211 s hg19.chr6_ssto_hap7 2004370 969 + 4928567 CTTGGGGGTGACAGGCTGGTCTGTGGAGGTGGTAGGATGGGGCTCAGGGGCTGTGGGGACAACTGGCTCAGGGGTCTTGACAGAGGACCTATTTGTCCTGCACCTAGTGGCCCGAGATGTGGGCTCAGGGGTGACAAGCTGGTTTCTGGAGGTGGAAGGCTGAAGCTCAGGGGCTATAGGGACAATTGATTCAGGGGTCTTGACAGAGGACCTATTTGTCCTGCCCCTAGTGGCCCGAGATGTGGGCTCAGGGGTGACAGGTTGGTCTGTGGAGGTGGAAGGCTGGAGCGCAGGGGCTGCGGGCACAACTGTTTCAGGGGTCTTGACAGAGGACCGATTTTTTCTTCCCCTAGTGGTCCGAGATGTGGGCTCAGAGGTGACAGGCTGGTCTGTGGAGGCGGAAGCCTGTAGCTCAGGGGCTGTGGGGACAACTGTTTCAGGAGTCTTGACAGAGGATCTATCTGTTCTTCCCCTAGTAGCCTGAGACGTAGGCTCAGGGGTAACAGGCTGGTCTGTGGAGGTGGAAGGCTGGAGCTCAGGGGCTGTGGGGACAACTGTTTCAGGGGTCTTCACAGAGGACCTATTTGTCCTGCCCCTGGTGGCCTGAGATGTGGGCTCAGGAGTGACAGGTTGGTCTGTGGAAGTGGAAGGCTCGAGCTTAGGGGCTGTGGGGACAAGTGTTTCAGGGGTCTTGCCAGAGGATCTATTTTTTCTTCCCCTAGTAGCCCGAGATGTGGGCTCAGGGGTGACAGGCTGCTCTGTGGAGGTGGAAGGTGGGAGCTCAGGGGCTATAGGGACAGTTGATTCAGGGTTCTTCACAGAGGACATATTTGTCCTGCTCCTAGTGGTCCGAGATGTGGGCTTAGGGGTGACAGGTTGGTCTGTGGAGGTGGAAATCTGGAGCTCAGGGGCTGTGGGGACAACTGTTTCAGGGGTCTTGACAGAGGACATATTTGTCCTGCTCCTAGT s canFam2.chr12 3501300 960 + 75515492 CTTGGGGGAGAACAGTTGATCTGTAGGGGTGACAGATTCAAGATCAGGGGCTGTGGGTTCAATTGGCTGGGGCATCTTGACAAAGGACCTATGTGTCCTGCCCCGAGTGGCCCGAGATGTGGGCTCAGGAGTGACAGGCTGATCTGTGGAGATGGAAGGCTGGGGTTCAGGCACTGTGGGGGCAACTGGTTCAGGGGTCTCGATAGAGAACCTTTGTGTCCTACCCCGAGTGGCCTGAAATGCAAGTTTGGGGATGACAGGCTGGTCTGTGGGGGTACAAGCCTGGAGCTCAGGGACTGTGGAGACAACTGATGTGTTAGTCTTGCTAGAAGACTTAGGTGTCCTGCCCT---------GAGATATACGTTTGGGGGTGACAGGCTGGCCTTTGTGGGTGGTAGGCTGGAGCTCAGTGGCTGTGGGGACAGTTGGCTTAGGAGTCTTGAGAGAAGACCTGTGTGTCCTGCTGTGAGTGGCTCCTGATGTGGGCTCAGTGATGACAGACTGGTCTTTGGAGGTAGACGGCTGAAGTTCAGGAGCTGTGGGGACAGTTGGTTCAGGGGTCTTGACAGAGGACCTACGTGTCCTGCCCCAAGTGACCTGAGATGTGGGCTCAGGGGTGACAGGCTGGTCTCTGGGGATAGTAGGCTGGAATTCAGGAGCTGTTGGGACAATTGGCTCAGGAGTCTTGACAGAAGACCTACGTGTCCTCCTGTGAGTGCCCCCAGATGTGTGCTCAGTGATGACAGACTGGTCTTCAGAGGTGGAAGGCTGGAGTGCAGGGGCTGTGGGGACAGTTGGTTCAGGGATCTTGACAGAGGACCTACGTGTCCTGCCCCAAGTGACCTGAGATGTGGGCTCAGGGGTGACAGGCTGGTCTTTGGAAGTAGAAGGCTGGAGCGCAGGGGTTGTGGAGATGTCTACTTTGGGAGTCTTGACAGAAGACCTAAGTGCCCTGCTCTGAGT a score=8709 s hg19.chr6_ssto_hap7 2005341 184 + 4928567 TCCGAGATGTGGGCTTGGGGGTGACAGGTCGGTCTGTGGAGGTGGAAGGCCGGAGCTCAGGGGCTGTGGGCACAACTGGTTCAGGGGTCTTGACAGAGGATCTATTTTTTCTTCCCCTAGTAGCCTGATATGTGGGCTCAGAAGTGACAGGCTGGTCTGTGGAGGTGGAAGGCTGGAGCTCAGG s canFam2.chr12 3502310 175 + 75515492 CTTGAGATATGGGCTCAGCAGTGACAGACTGGTCTTTGGAGGTGGAAGGCTGGACTTCAGGG---------ACAAGGAGTTCAGGGGTCTTCAGAGAGGACCTACGTGTCCTGCCCCGAGTGACCCGAGATGTGGGCTCAGGACAGAGGGGCTGGTCTGTGGGGATGGTTGAGTGAGGTTCAAG a score=2890 s hg19.chr6_ssto_hap7 2005525 34 + 4928567 GGCTGTGGGGACAACTGGTTCAGGGGTCTTGACA s canFam2.chr12 3502260 34 + 75515492 GGCTGTGGAGACAACTGGTTCAGGAGCCTTGACA a score=5735 s hg19.chr6_ssto_hap7 2005592 93 + 4928567 GAGGTGGGTTCAGAGGTGACAGGTCGGTCGGTGGAGGTGGAAGGCTGGAGCTCAAGGGCTGTGGGCACAACTGTTTCAGGGGTCTTGACAGAG s canFam2.chr12 3502021 93 + 75515492 GATGTGTGCTCAGTGATGACAGACTGGTCTTCAGAGGTGGAAGGCTGGAGTGCAGGGGCTGTGGGGACAGTTGGTTCAGGGATCTTGACAGAG a score=5336 s hg19.chr6_ssto_hap7 2005685 116 + 4928567 GATCTACTTTTTCTTCCCCTAGTAACCTGAGATGTGGGCTCAGAGGTGACAGGCTGGTCTGTGGAGGTGGAAGGCTGGAGCTCAGGGGCTGTGGGGACAACTGGTTCAGGGGTCTT s canFam2.chr12 3502294 98 + 75515492 GATTTACGTGTCCTGC---------CTTGAGATATGGGCTCAGCAGTGACAGACTGGTCTTTGGAGGTGGAAGGCTGGACTTCA---------GGGACAAGGAGTTCAGGGGTCTT a score=26841 s hg19.chr6_ssto_hap7 2005804 467 + 4928567 AGAGGACCTATTTGTCCTGCTCCTAGTGGCCTGAGATGTGGGCTTGGGAGTGACTGGCTGGGCTGTGGAGGTGGAAGGGTGGGGCTCAGGGGCAGCAGAGGTAGCTGGAAAGGGTGTCATTCTGGAGGACTTCCGAGTTCTAATTTTAGGCTTTGGGTGGAAAGGCTCCAGCTCTGAGGACAAGGGAGCCTCTGGAGCTTCCTGACTCCCATCTTGCCTGGTCTTACGAACGGTTGGCTTGATAGAAGGTAAAAGGGGAGAAAGAAGGGGCGGAGGTGCAAGATGTTTCTGGCTCTGAGAGTTAAGGGGCTTTTGGGGTGGGGCTGGGGCTTCAGGTACTGTAGGAGGCAGACAAGCATCTGGAGATTCCTGATCGCCCTAGGGAGAAACAGAAGCAAGTGAGGG-GGAGGAGGT--GGAGAAAAGAGATAGAACTTGGATACTGTTCTTGATACTTGTTTATGGTTAGA s canFam2.chr12 3502395 467 + 75515492 AGAGGACCTACGTGTCCTGCCCCGAGTGACCCGAGATGTGGGCTCAGGACAGAGGGGCTGGTCTGTGGGGATGGTTGAGTGAGGTTCAAGGGCTAAAGAAGAAATTGCAGAGAGTGTCTTCCTGGAGGACCCTCGGAGCCTGACTTTGGATTTTGGGTACAGAGGCTCCATCTCTGAGGATAAAGGAGTCCCTGGAACTTCCTGATTCCCATTTTGCCTGGTCCTGGGAATG---GGCTCTAAAGAAGATGGAGAGGAAGAAAGGAAGGGCTGAGACACAGGATGTTTTTGACTCTGAGAGAGGAGGGGGTTGTGGTGTGGGGTTGAAGCTTCAGGCACTGCAGCAGGCAGATGAGCATCTGCGGATTCCTGATCACCCTGAGGAGAAATAGAAGTAAGTGAGGGAGGAAGAGGCAGAGAGAAGAGAGACAGTACTTGGATACTATTCTTGATACTTGTTTATTGTTAGA a score=72527 s hg19.chr6_ssto_hap7 2007071 1498 + 4928567 TATGCTCACTGGATTTTCCTTTCTGTCTATGATCTCTCCTCCATTAGACTGGGATCTACCTGGGAAGCTA-----CCTTTTTCCCACAGACCTGTCTCCATAATGCTACTATAGTGTTCTCCACACGTGGATGATGGTAAGGAAAAGGATGGCTGG--------GGCAAAGA---AAGAAGAAACACGAAGGGTCTTTCTTTTGAGTCAGGTA---GGAGATACAACTTAGGAAACAGATATGGAAAACAACGGGTGCCGAGGATAAAGGAATAGAAGCCAATCAAGGCGTGACAAAAATGGAAGAAAACT--GAATAATGAGAAAGGAATAGATTAAAGTGAGGCTAGGTGAAAGAGCATTGGAGAAGATATAGAGATGACTTGTGGAATAGGAGGTAGAAAAAGTAGCTCTCACCCTGGAAACCTTCTCAGCAGCTCTGATCCTGGAAGCCTTCTCAGCAGGTGGCATCTTGCAATTCAGGAGGCCTAGACAGAAAGTAAACACAA----AGGTGGCTGAGTTCCAAGCAGCTGGTTGCCCAGGGGTTGATTATCACGAGGCCTGTGTATCACCTTGGGTTCCCCTCTGCCTTCACTTACCTTTCTGATGCCTCCTGGGGCTCACTGGGGATCCCCTTCCACCTGACTGGCTCCCAGAAGGTACGGGGGCTGAGGTAGGTCCCGGAAGGTCCCCCGCCCCCACCCCAGGCTCTGGTGTTGGGCTGGAGGCCTGCCCTTTCTGGTCCTGGCTCCCTCCCTCTGGCTCCCCTCTCTGTGTATCTCTCTCCAGGATCACTTTGGGCACCTTCTCTTCTAACTCGGCTGGATCGCACTCTCTGTTTGCTACTGGTCTCTCTACTTCTCTCTCAAATGCTTTGCTTGGAAGGGTCTGCTTCTGTACTTGTTTCTCTTGTATTTCCTCAGATGTCTCAATTTCTACCTTCAAACTCTCCCTATCTCTTTCAGGACTTGCACTTTCCCCATTTTTGTCAGATTCTTGTCTCTGGGTGTCTCTAGCTAACAACTGTTTTTGTTCTCTGTCCTGTTTCCCCTTGGTTAATTCTTCCTCTCCTGTCACATCTGTCTGTCTTTCTGGTAGCAGTTTCTCAGTTTCTCTCTCCAATGGCCCTCTCTCAGGGCCCACCCTCTCTGCTGTTTCTTTTGGTATACCCATGACTTTATCCACAGTCTGCCTCCCTCTGCCTTGAATCCCCATTGGCTCTGTGTGAACTGGGCTCTCTGGATGTTGGTCTCCTGGTATTGCCCTAGGTGGAGACAGGCAAGGTCCATAGGCCTCAAGGTGCGTGTCAAAAGGCTGGGTCTCAGAGTCCTCAGACTCTCTCAGACAGAATGGCTGTGTAGCCAGGACCTCCCATGGTTCATCTAGGGTACCTGgaaggggaggaaggaagagagagagagggagagggagaga---aaagagggagaggaag--------------agggaaagggaagtacaggttg---acataataaatatgatgagaaaggatttagataaactcatgaataata s canFam2.chr12 3502863 1458 + 75515492 TGTGTTCCTGGCACTTCACT---TGTCTGTGACCTC-CCTTCATGAGACTTGGAACTTCCTAGGGAGGAAGCAGTCCTCATTCCCACAGACCTATCCTC---ATGCCAGTATAGTGTTCCCCAGAGATGGATGATGGTAA-TAAAAGGATGGCTGGAAAAAGATGGGAAAGACATGAAAAAAAAAAAAAAAGGACATTC---TAAGTCAGGCAGAGGGAGACAGACCTTGGGAAACAGATACAGAAAATGATAGGTG-TGAAGGGAAAGGTACAG-AGCCAACTAAGGAGTGGTGACAATGGAAGACAATTGGGAAGATGGAGAAAGGAAGAGATTAAAGCAAGGTCAGGGGAAGGGGCAACAATGAA---ATAGAG---------------GGAGGTAGAAAAAGCAGTTCTCAC---------------------------CACAGAGGCCTTCTCAGCAGGTGGCGCCTTGCAAGTCAGGTGGCCTAGACAGAAAGTGAAAAAAAGTGTATGTAGCTGGGGTCTAAGCACTCAGCCACTTAGGGGTTGTTTAGCACAAGTGCTGTGTACCACCTTAGGTTCCCCTCTGCCTTCACTTACCTCTCTCCTGCCTGCTGGGGCTCATCGGGG------CTCCACCTGACTGGCTCCCAGAAGCTTCTGGGACTGAAGCAAGTCCCTGCTGGGCCCCCATCCCTGCACTAGGCTCTGGTGTTAGACTGGAGGCCTGCCCTTCCTGGTCTTGGCTCCCTTTCTCTATCTCCCCTCTCTGTGGGCCTCTCTCCAGTTTTACTTCTGGTACCTTCATGCCTAATCCACTTGGCTCACCCTCTCTCTCTACTACTGGTTTCTCTGCTTCTCTTTCAAATATTTCTCTTGCAATAGACTGCTTTTCTGTCTCTTTCTCTTGTGCCTCCCTGGGTATCTCAATTTCTATGTTTAAACTCTCCATGTTCCTTTCAGTACTTGCACTTTTCACCTTTTGGTCAGACTCTTGTCCCTGATTATCTCTAGCTAACA------------------CCCGTATCCCTCTAGTTAACTCT---TCTCCTAACACATCTTCTCTCTCTCCTGCTGGCAGCTTCTTGGTTTCCCTGTCCAATGGGCCTCTCTCAGGGGCCACCTCCTCTGGTGCTTCTCTTGGTGTACCCATGTCTTTCTCCACAGTCTGCATCCCTCTGCCTTGAATCCCCAGTGGCTCTGCATGAACTGGGCTCTCTGGATGTTGGGCTTGTGGTGCTGTCCTAGGTGTAGAGGGGCAAGATCCATGGGCATCAATGTGGGCAGCAATGGGCTGGGGCTCAGAGGCCTCAGACTCTCTTGGACAGAATGGCTGTGTTGCCAAGACTTCCCACGGCTCATCCAGGGCACCTGGAAGTAGAGTCagggagagagagacagagagagacagagagacagagagatagagacagagagacacacacacagagagagagagaTGCAGATTGGGAAAGTAATAAATAGGATGAGAAAAGATTAAGATAAATTCATGAATAATA a score=1613 s hg19.chr6_ssto_hap7 2008569 37 + 4928567 aatc-------tgaacaggttattaaaggtaagctgggaataag s canFam2.chr12 3504544 44 + 75515492 AATCATAATCATAAGCTGGTCATTAAAGGAAAGTTGGGAAGAGG a score=1932 s hg19.chr6_ssto_hap7 2011129 26 + 4928567 AGAGTATGAAAGAAACATGTAGGAAG s canFam2.chr12 3504673 26 + 75515492 AGAATATGAAAGAAACATGTAAAGAG a score=10933 s hg19.chr6_ssto_hap7 2011441 204 + 4928567 AAAAAAAGAGAATGCAGAATTGGGGACACAGAGGAGGGAAGAGTTTCTTATACCTGTTGTCTGGAAGCTGCAATGGGAAGGGCCAAGCTCTTGGGGTGGAGTCAACATGAAGGCCTGGGTAGGTTCATCCTCCATGCTCTGGACTGCTGTACAGGAAAAGATGGCCTAAGTTCATCTCCTCCATACTACTGTAGGGTTCCATTC s canFam2.chr12 3504699 201 + 75515492 AAAAAGCAATGATGCCAAGTTAGGAGCATGAAGGAT---AGAGTTTCTTATACCTGAGGCCTGGAAGCTGTAATAGGAAGGGCCAGACTCTTGGGGTAGAGTAGCCAGGAAGGCCTGAGTGGCTTCATCCTCCATGCTCTGGACTGCTGCAGAAGAAAAGCTGGCTCACGCCTAGCTCTTCCACAGAACTCTGGGGACCCATTC a score=14513 s hg19.chr6_ssto_hap7 2011646 257 + 4928567 TGGTCTCCTACCCTACCCATACTAGCCTTTAC--CCTTCAAGGACCACCAGTCTAATCTCCCAGCTCCCACTGGTAC-AGGATTCAAATAACACAGAAGTCCTCACCTTCCAGGCCCTGATTCTC------CAGAAAGCACTGGGTAGCTTGTAGGTCCAGATCTTCAGAATCTGGTCGGGGAGGAATATAAGACAGTTTAAAACAAAAATCATACCTGACACTAAACTCCTTAAATAATCTCTACCTTTCTCTCCCCAACCCCAG s canFam2.chr12 3504901 258 + 75515492 TGGCCTCCTGCCCCACCTACACCAGCTTTCACAACCTTCAAGGACCACCAGTCTGGGCTCCCAGCTCCCACTTGCACCAACATCCATACAACACAGATGCCCTCACCTTCTGGGCTCTGATTCTCTCTCTCCACAAAGCACTGGGTAGCCTGTAGGTCCAGGTCTTCAGAATCTGATGGGGGAGCAATATAAGATAG--------ATAAGTCATATCTCATGCTTAACTCCTTACTCTTTCTCTACCATTTTCTCCCCAACCCCAA a score=152910 s hg19.chr6_ssto_hap7 2011922 2521 + 4928567 TTTCAGAGGTCAAGGAAGGAAGGCCAGCACTTACCACCATAGTTGTCTTCAGAGTCCTTGGTCCCACCCACATGTTGTTCTCTCTCCCTTCCTGTGGGGACCTGGGCTCCCTCTCTCTGTGGCTGGGTGGATTCCCCTAGAGTGTCTGTGTCCACCACCAGATCTGTGAGGTTCTCTCTTGAGATAGGGAGG---TCCTGCTCCACTTGTGCCACAGGTGGCCCACCCTGGGCCCCCACCTCATGAGCTCTCTCCTGCTTAAGAACAGCTGCAGCCCACTCTGCCCCAGCATCCCCTTCTGCTGGAAGCTGGCTCTTTCTTACATCTGCAACTACTGAGGCTGTTAGGGAGGTGCCCTCCTCTGCATCTGTTTCACAGTCCCCATGCAGAGG---CCAGGCTTCCTCTAGAGATACCACAAGCAGCTTTGCTGGTCCCCCAACTGCTTTCACATCTGTTTGATTTGTCCCCTCCACAGACACCTGATGCTTCTTTATATGTATAATGGCTGACCCTGGCGGGACTTCCTTCTCCACTTGTGTGTTGATGTCCACTGTGGTGGAGGCTTGGCTTCTCTCCAGGTGGATCCCAGGTGAGCTCTTATCTGCTTCCACACTGTCATCACTGTCCCCAAAAGGAGGTTGGTCCTTTTCTGAATGTGCTCTAACAAGGGCTCTAATCTTTGTGTGATCCTTGAGGACAGCTTCTCTATTTTCCACTGGGAGCTCTTCCTCCTCCACGTCTGTGTCACTGTCTCTCTCAGTGGTGGTTTGGCTTCGCTGCAGAAGGACCACACGTTGGGGCATGTCCTCTTCTGCATCT------CTGTTCCATATAGCAGGCTGGCTCTCTTTCAGATGTGCCAAAGTCAGCGCTGCTGAGACTTCTTCCTCGTCATCTGTATCGCTGTTGATAACCATGGAAGCTTGGCTTTTCTCCAGAGGGACAGCCTGTGGGGCCTTGCCTTCTTCCACATCTGTATCACTACCAGCCTGGCTCTCCTGCAGATGGGCCAGGCCTGGTGCTCCAGGACCCCTTGTACCTACTCCATGGAAGATCTTCCTCTTCTTCATAGGAATGACAACTGGGGTTGCTGGGATCCTCTCTTCTTCCGCATCAGTGTCGCTGTCGATGAAGCCAAAAGGCTGAGCCCTTTCCAAATGGACCTCAGCTGGCCTTCCAGGAGGCCTGCTGTCATCATCCACATCTGTGTCACTGTCCTCTCCAGGAGGTTGGCTCCTCTCCAGAATCACCCCAGCTGGAACCACCCCATTCCCTGCACCCCTCTTGACTTTTGTATCATTGTCCCTCTCCTTCACTAAAGGCTGATCCTTTTCAAGCTGGATTTCAGTTACAACTTCAGCTTCAGACTGCTTTGCCTCTACAGTGGCACCTCTTCTGGCAGCTGAGGAGGCCTCCTCTGTGGCTGGTTGCTGACCTTCTTCCACATCTGTGTCACTGTTCAAATTGAAGGCAAAAGGCGGCCCAAGGCCGCCCAGGACCGGGGAATGCCCCTCTTCATCACTGTGAA-GGGAAGAAAAGAGA----GTCTATAGAATTTATTTCCCTGGAAGGGATAccccaactcaactgtgagctccttgaggggagacacaaggtagca--tatttcttcttctgtttc----------------caatttgttttccacttggcacatcagatgtgctccataaaaattcagctgagtgaatgaatATGTATGGTTCCCCAGCCCCAACTCTCATGATAATCATCTCTTTTAGAGATTGATCCTCCAGCCCCTGGTTCTTCCTCATTTTGAAGACTCAGGTGTCTGACTCTTTGGCACTCACCTCTCTGGAACTATCACAGAGGAAGATGTGGTCCTTGATTTTTTTACCATACGCCTTTCAGAAAGAAAATCTGTCAAGAACAGAAAGGAATGA-----GTTGACAATTGTACACTCATTATTCCTGTCTCCTCATTCTCCCTGCCAATATACAAACTTACCTACTTCCTCCTCCGAGTCCTCAGCCAACAGAAGCCTCTGGGGTTGAGTTTCTCCCTGTACTCTGGGTGTCTCTTCTACTGTCAGAGGGCCCCGGGAGACAAAGGGCAGAGAGACATCCAGGCGATGGTACTGGCAGAGCAAGTCAGCAAAGAGAATCAATTCCTGGTCCCTCAGACGGTGACTCACCCCAGGGCTCAAAACCTTAGGAGGTCTCAGGATTTGAGTACCATTAAGGCTCCCACAGTCTCGGAGGATAGGTGCCTTGTCCCAGGCTAAGATTTCAATCTCTGCATGTTGTTTGGAGATAGATGGAAAGGGCAGGGCCACAGAGCAGTCAGGCATTCGGCCTACCACATTCTTCCCGAGGTGTAGTGGGAAATCTAAGAATTAGAGAGGTAGATAAGCTCCAAGATCAGAGTCCTGGCCTGTCATTAGGAAAAAGTGCCTAT----TAGGTACTCTACTACTCACTCAAGGCCTCCATATGCATTAGAAAAATAAAAGGCCCTAGGACATCTAGGCACTGAAAGAGTATATGCGATACCCCATCCATCCACAAT s canFam2.chr12 3505751 2529 + 75515492 TTTTCGGGGTCAAGGAAG-AAGGCCAGCACTTACCACCATGGTTGTCTCCACAGTTCTTGGTCCTGTCCACATGTGGTTCTCTCTTCCTTTCTGTGGGGGTCTGGGCTCCCTCTTTCTGTGGTTGGATGGTTTCTCCTGAAGTGCCTGTGTCCACCACCAGATCTATAAGGTTCTCCTTTGAGACAGGGAGAAGATCTTGCTCCACCTGTGATACAAGTGAAACCCCCTGGGCCCTCGCCTCAAGAACTCTCTCCTGCTCAAGAACTGGTGCAGCCGATTCTGTCCCAGCATCCCCTTCTGCTAGAAGCTGGTGCTTTCCAGTATCTGCCACCAGTGAGGCTGCTAAGGATGTGTCCTCCTCCACATCTGTCCCACAGTCCTCAGATAGAGGAGGCTGGGGTTCCCCTAGGTGCATCACAGGCAGCTTTGCTTGGCCCCCTTCTACTTCCACATATGTTTGATCTGTCCATACCACAGGCACCTGATGCTTCTCCACAAGTATAATAGCTGGTCCTGGTAGGACTTTCTCTTCCACTTGTGTG---ATGTCTATGGTGGCAGAGGCTTGATTTCTCTCCAGGTGGACCTCAAGTAAGCTCTTATCTTCATCTACCTCTAGATCACTGTCTTGGAGAGGAAACTGCCTCTTTTCTGAGCATGCCTTG---------------TCTGTATGACACTTGGGCACAGTTCTTCTGTTTTCCATTGGGAGACCCTCCTCCTCCATGTCTGTCTTACTATCTCTCCCAGCAGAGGTTTGGCTTGGCTCCAGAAGGGCCACAGGTTGGGCCCTGTCCTCTTCCACATCTGTACCTCTGTTCCATGTATCAGATCCGCTCTCTTTCAGACGTGCCAAAGTGAGTGCTGCTAAGACTTCTTCCTCATCATCTGTATTGCTGTCAATCACCATGGAAATTTGGTTTCTCTCCAGAGGGACTGCCAGTTGGATCTCACTTTCCTCCACATCTGTATCATTACCAGCTGGGATCTCCTGTAGATGTACCAAAGCAGGTTCCTGAAGACTCTTTGTACTAACTCTGTGGAAGATTTGCCTCTTCTTCATAGGAACTACAGCTGGTGTTGCAGGGATCCGTTCTTCTTCCACATCAGTATCACTGTCTATGAAATCAGAAGGTTGGGCCCTTTCTAAATGGACTTCAGCAGGCCTTACTGGAGGCCTGCT---CTCATCCACATCTGTGTCACTGTCTTCCCCAGCACTTTGGTTTCTCTCCAGAATCCCCCCAAGTGAGACCACCCCATTCCTTGCATCCCTCTCAACTTTTGTGTTATTGTTCCTCTCCTTCACTGAACACTGATCCTTTCCAAGCTGGGTTGCAGGTGTCAT---AGCTTTCAGCTGTTCTGTTTCTGCAGTGGAGCCTCTTCTGGCAGATAAGGAGGCCTCTCCCGCTGCTGAATGCTGACTTTCTTCCTCATCTGTGTCACTGTCCAGGTTGAAGGCAAAAGGTGGCCCAGGGCCATCTGGGGCAGGAGAAGGCCCCTCTTCATCACTGTAAAAGGGAACAGAAGAGAAAGGGTTGATAGCATCTGTTTCCCAAGAAGAAATActcca-ctcaactatgagcaccttaagggcagacacaaggcagtagctgtttgtttgtttgtttctttcttttctctccagcaattagttctc-acttggcacatcagagatgctcaataaaagttcagctgagcaaaagagtATGTGCAATTCCCCAGCCCCA-CTTTCATAACAATCATCTCttgcagata--gattctacagtccctggttcctcctccttttaaagatgtaagtgtctggccctttggcacttacctctctggaactactgctgccaaaggggaggtccttggttctttcaccacacaCCTTTCAGAAGGAGAATCT---AAGAGTAAAAAGGAATTAAGTTAGTTGACTGTTCTATACTCACCATCCCCATCTTCTCACCCACCCTCCCAATATACAAACATACCTACTTCCTCCTCCGAGTCCTCAGCCAACAGGAGCCCCTGGGGTTGAGTTCCTCCCTGTACCCTGGGTGTCTCTTCTACAGTTAGAGGACCCCGGGAAACAAAGGGCAGGGGGACATTCAGGCGATGGTACTGGCAGGGCAAGTCAGCAAAGAGAATCAACTCCTGGTCCCTCAGCCGATGACTCACCCCTGGGCTTAGGACCTTAGGAGGCCTTAGGACTTGAGTACCATTGAGGCTGCCACAATCTTGGAGGACAGGTGCCTTGTCCCAGGCCAAGATTTCAATGACTGCATGTTGTTTGGAGATGGATGAAAAGGGCAGGGTCACAGAGCAATCAGGCATTCGGCCTACCATATTCTTCCCAAGATACAGGGGAAAATCTAAGAATTAGAGAGATAGATAGGTT--AAGGCCTGAGTCTTGGCCTGCTATCGGGAAAATATTCCTGTTAAGTAAGTACCCCACTACTAACTCAAAGTCCCCACACACATAAGAAAAATAAAAGACGGTAGGACATATAAGTATTG-AAGAATATAAGCAATACATTATTCATTGTCAAT a score=22084 s hg19.chr6_ssto_hap7 2014899 462 + 4928567 CATTTCAATCTCTTAATTTTCTTTTATCAAAGTAAAATCACTTCCAGTGAGTCCAGGGTAGTAGTCTGCAACTATCAACTCAATCGGCCCCATCTCTTCCATTCATGAAAAAAAAAAATTCACATCTCATTGAAACATACATAAGCTTCTTGCAACCCTCCAAATACCTTACCACAAAAATAAAAGATCTATATCAATACTTGAACATCCAATACCCTCTGACCTTTTTCTGGTCCATGGGCACCACTAAAGATATGTAGCCGCCCTACTGGCTCCACGTTACACCTCAAGGATTCACTGGATTGCTCTGTCTCCTCCTCTTCTTCAACATCCCAGTCAATAGCCTGGGTGTCCTCCATGATCTGGGAAGGATACACATTATCAATTATCCTCATTATTGGTTCACACAAACAGCATCAGAGTTATCAGACTGAAAACTAGGGGGTAAACTGGATCATTATG s canFam2.chr12 3508436 442 + 75515492 CATCTGAATCTCTTCTTCTTCTCCTACCAAAGTAAAATTGAGCCCATTGAGTCCAGGGTACTTGCCAGGAGCAATCAACTCAATCAGCCCCTCCTCTG-CATTCCC---AGTGAAAAACTCAGATCTCCTCGAAACATATAAAAGATGCTTACAACCGTCCAACTACCTCCCCATAAAAATAAGAGGCCTATACCAGTACTTTATCATCCAAGAAA--CTGACCTTTTTCTGGTCCATGGGCACTACTGAAGATATGCAACCGCCCTACAGGCTCTAAGCCACGCCCCAAGGCTTCACTGGGTCTCTCTGTCTCCTCCTCTTCTTCAATCTCCCAGTTGATAGCCTGGGTGTCCTCCATGACCTGGGAAGTAAACACATTATCA-----TCTCA-----GGTC--CTCGGGCAGTCTCAGAG--AGGAGGCTGATAACTGGAGATAACCCTGGAGAGTTATA a score=2358 s hg19.chr6_ssto_hap7 2015367 57 + 4928567 GATGCTTCTCTTTCCACCAATCTTTCTGTTGTTAACCTTCTGAAGCACTTAAAACAt s canFam2.chr12 3509169 57 + 75515492 GACATGTCTCCTTCTGACAACCAACCTGTTATTATCCTTCTGAACTATTTAAAAAAC a score=17524 s hg19.chr6_ssto_hap7 2015742 561 + 4928567 CATGCTTTTTATACTTTTACCAGACCACCTCAGTTTGATCAGATGCAACTGCAAAAAATGATaataaaagatgacatatatagaagcttcctatgtgtcaagcactgttctaattactttatatcgactctgactcatttaatcttcacaagaaccttgtaaagtagtattactatcttccatttcttcagataaagaaactgcaacatagctgggttaagATTTTCAGATCTCCTTGAAACATACATAAGCATATATAAGGTTAAGACTTGCCCCAAatcactcagatgt---ctctcctcta---aaatcttgatggtttttcgtgcacacag-----aataaaatctaaactccttagcgagaccctccatgatctgaacttcacatcttgtaacgcctacccctcgcccgcaaaagcctatggttcagccagaca------ttttccccagtcttcgaacacactgttcttgt--cttcccacatcttcatgccttagcccaattccttggctttttcccacctagttttctggtccaacttctacc-atcctttaagattcagttcaaatgtcact s canFam2.chr12 3509859 502 + 75515492 catgctttttatactTT-AGCAGAACATCTCAATGTGATCAACT--AACTGCCGAGAATCCtaacaaccgagg---tacatagaggcttgttctgtatgaagcattactctagtt----tatactgac----actcacttaatcctcataaaaatgttttaaactattattattactcta-------tcagactaagcaactgcaacatagacgggttaagg--------------------------------------------aacttgcccaaggtAAACAAGGTATTTTCTGTCCTCTGTTTAATACTTCATGGCTTTCCATGCCCACAGGATGAAATAAAATCTCAACTCTTTAGCAAGATCCTCCATGATCTGCACCTCAGGGCCTG------CTTCCCTCTGCC----AAAGCCTATGGTTCAGCCACATGGACCTGCTCTCCCCAAACT--GAACACACTGCTCCTGTGGTTCCCCATACCTGCATGCCTTGGTC-AGTTCCTTGGCCCTTAGCT-CCTAGTTTTctggtccaactcctacccatgatttatggttcagtccaaatgtcgcc a score=52647 s hg19.chr6_ssto_hap7 2016595 1482 + 4928567 tcaaatgtcactttctcagcaaaccctttcctggcGTGTTCCCTGCCTTCTCGTGTTCCTGGTGTATCCTGCCTGTTCCACAGTGGTCAATGGATTTGTGCTTACTCTAAGATCTCTCGCTATATTGTAACCATTACTTTCCATTTCTGCCTTCACACTCACCCACCTCCAGGACTGGATTAGGGGAACCGTGTCT-TTCCCCTAGGGTCCATCATATTCATTCAATGGT---TATGGTATACCTG------TTTGAAGTATTTGGTATACATCTGTGAACCAAACATGAAATCGACCCTGCCCTCGGGAAGGCTCATCACCGAGCCTACTGATGAAGGAACAAATGA-----GATGGAAAG--AAAATAGCATAAATGGAATTCACCTGAAAATATGCCACTCTAGAGGGAAACTGTTGACAGGTAGGGAAAGTAGGA--TGCCCCATGGATAAAGTGTCAACTCCGTCTTTATGACAGGCCAACTCAGCGGGTGCCCACCACGCTTGGCTCCAATTCAAAGAGCCACCATCTTTGGTCCCCACCTCAGTGGGTTCCCTTGTGGCCCGACGTCTCCCTGTGTCTTCATACCTAAACTCGGAGCGGGGCGCCAGGTAAGGATGAGTATTACAGTCCGAGAAGCGAACTTCCAAGTCACCTCCGCCCAGTCGCACCCAAGGTACGCCCCTCCCGCCTTCTGGGGGAACCAAGATGGCTCCCGGGGAGCCGTGGGCCAGGCCCCTAGAACTCACCTACTTTAAGTCCCCGCGCGCGCCACCAGTAACGGTCGCGACCCGGGTGGAGCGACTGCGTGTGCCGAAAAAGAGCTTATTTGCTGATTGGCTTCTGCCGCTGTCTTTCACAACCG-------------CAGCCAGTCGAGCGGAGGCACACCCAAAG------------------------------CCCCGCCCCCTTAG-AGTTCAAATAGGTGGTGTCTCCCAGGCTGCTGAGATCAGTTAA-TGAGACGGTAATTGAAGGCCGCCGTGCGCCAACAGAATAATGCACGTCGATTGGGCAGCTCCAAGGGACAACCCACTACCGCTTGCCCGCCCACCACCCACTTCCCGCGCAG--TTCCAAACCGCGACCAGAGAGTCTGGCGCCAGCTGCCGGCAACGGATAGAGGGGCTGTGTCATAGACGTC--CGACGTGTCTGGTAAGGCCAGAGCGCCTTTCCTCGGTCCTCCTAGACATGGTGTCCGCTGACTCATGAGAAATGAAAGTGGGTTGCGCGTTGCAGTCGTGGCTGGAGGCTGCAGTTTGGAGAACAGCCCGTAGGCGTGGCAGTT----CACTCCTGTTGCATTGGAATTTCATTTCCTTTTGATTTGG--TTTGTAGTAGAAGTAATATCTTTC--TTCCTGGGAATACGTCTCTGACGGACATTTTGAGGTCATTTTCTTAAATCCAAGATCCTAAAGATCTGTAGTCGAACAGAGAAAACTGGTTTGCTCTCTGTCTTAAAGGCTGTCCCCA-CCTTTCGAGGGGCGAGGGAAGGATCATAAAATCATTTAt s canFam2.chr12 3510361 1426 + 75515492 tc------------ctcagtaaggcctttcctgGAGGCGTCCTTGCTTTCT---GTTCTTGGTGT-CCCCACATGCCCCCC-GTGGTCGGAGAACTTTTATTTCCCCTAACACTTCTCACCATATTGCAACCATTACTTTCCATTTCTGCCTTCGCA-----------------------------AACTGTGTCTCTTCCCCTAGGTCACATCATattcattcaagaatacctactgagcacctggaactgttcaaggagctcggaatacagtcacaaaacaaaca--aaattaaccccaccgtc-----------------------ctg-cgaaaggacaaatgaaaggtgatgaaaactcaaaacggtgagggtggaaTTC----------------CCTTAGAGACTAACTGCTGACAGG----GAAAGCAGGCGTCGTCCCCGGGG---AGAGCTGACTCCGTCCCGCAGGCAGG--AACTCAACGGGAGCCCAGGCCCCGCGGCTCCA-TCCGGGGCGCCACCATCTTTCATCTCCACCCCAGGGGCTTCCCGCCGGGCCCCACGTCTCCCCAT--CTTCATACCTAACCTCGGGGCGGGGCGTCAAGTAAGGCTGAATACTACAATCCGAGAAACCAACCGGCAAGTGCCGTCCGCCCCGGCGCGGC-AGGGCACGCCCCTCCCGCCCTACGGGAGGATCAAGATGGCTCCCGCG-AGCGGTGGGCGCGGCCCCCAGAACTCACCCACTGCGAGTCCCCGCGCGC--CGCCAGTAACGGCCGCGACCCGGC--GCGCGGGAGCTCGCGCCGAGAGGGCGCCGGCCCTTTGATTGGCTTCTGCTGCTGTCTCTCACGACCGACGACTGAGGAAGCGCCCAACCG---GGGGGCGCCGCCAAGGTcccgccccgccccgccccgccccgccccgccccgccccCTCAGCAGCTCAAAGGGGCAGGTCTTCCTGGGCGCCTGAAATCGGTTAAGTGAGGCGGTCACCCGAGGCTGCCGTGCGCGCACTGAATGGCGCGCCGCGATTGGGCAGCTCCAAGGCACAGCGCGGCACCGCCGCACCACGCACCGCCCACTTCCCGCGCAGATTTCCGAACCGCGACCACAGAGTCTGGCTCC------CGTCGGTGGATAGAGGGGCCG-GCCACAGTCGTCGCCGAGGCGTCGGCCGCGGCCAGAGAGCCTT-CCTCGGTCCTCCCAGACATGGAGTCCGCTGACTCAGGAGAAATGGAAATGAGCTGCGGGTTGCAGTCGTGGCCGGAGGCTGCAGGTTGGAGAACTGCCCGTAGGCGTGCCGCTTGAAGAATCTCCATCACAGTGGGAATTCATTTCCTTTTGAATTGGCTTTTTTAGGGCAAGTCATGTCCTTCCCTTTCTGACACTACGTC-CTGATGGACCTGTGGAGGTCATTTTC--------------CTAAGGATCCCTAGGCAAAGACGGAGAACTG-TTTGTTAACTGTCTTAAAGGTTGACCGAGGTCTTTCAAGAGGTGGAGGACGGATGCTAAAACCATCAGT a score=11332 s hg19.chr6_ssto_hap7 2018699 312 + 4928567 TTATCTCACAATAAGACATGAAGAAAATGGTAACtataacact----tgcataattcataaagtcctttctgttggttatctcaattctgtgcacaacagtcaaataagcagattttacaaacgaggagctggagccctgcaaagttaaaggactttcctaggatcctacagctaatatagag-----acaaattgaaacaagttatctgattgtgtattttgagttatttctactCCCACAAAATGACTGTGTTCATT--------TCCCTAAAACGTAAAGCATTATATTTTAAGTGGGTAGAGAGGG-CTTACACAAGTTGATGTTC s canFam2.chr12 3511791 320 + 75515492 TGATCTCACACTAAGA---GAGGAGAACAGTGACAATACTATTAACGTGTGTACTTGAGGaagtcctttgcgttcattatctgtcctccaaccacaacaatcaaata----gatttcagg---gagggaattgaagtctgcgaagttaagagacctgccgacgttcctacagctaatggaagggaaggacaacttgagacaagtcctctgattctagattctgaactttccccactagcacAAAATGACTGCTTTCATTAGGATCATGCCCTGAAACATAGAACATTCTCTTTTAAGTGGGTAGAGAAGGTCTTGCACAACTTGCTGTTT a score=13324 s hg19.chr6_ssto_hap7 2019178 487 + 4928567 AAAAAAAAGAAATACATTGATCTGTGTGATCGAATGTGAATTAACAATGACGTTGACTTGATACTACATTTCTGA--------------GTGGTTACCACATtttattgattgtatgcttctcaccagactgcaacatcctggaggacagggagctaattcttaatcattttgtaaccatagctcctaatttggtggatacatagtaactatcaaataagtgaataaTAAATCTATGGGAAGAAGCAGATGGACTCCGTCTTGAACCCACTCAATTTTTCCCCCATCAATTACCCCTCTCTCGTTTTTCAATACTGGGTCTCTTGCAGAGTTGCAGTGGC-GGCCACCTGGTCAGTGAAATCAGCGAATTGAAAAACCACTGACTTCATTAACATGTCTAAAGAGGCAGGCTGAAAAA-ACTGAAAATCTATCAGGCATCTCATTCCATAGTTCCCTGTTTGACAAGAAGACCAAGGTGTCTTCAAAGTCTGCCCTAAG-GTCC s canFam2.chr12 3512123 456 + 75515492 GGTGAGAAGAAATGTGTTGAC--------TGGACTGTGAGTGAACAATGATG--ACCTTGATAGCACAAGTCCTATGTCCTATTACAATGTGGT-AACACCCTCCATTGTTTACACATTTCCCATCAAATTGCAG-AGACTGAAGACAGGGGAACTAATTTTTACTCACTTTGTATCCCTAGCTTCTGGCTTGGTGGACACTTAGTATCTATCAAACGA----------ACCCTTAAGGAGCATGCC-----CCTCTGACTTGAGCGCATCCAATTTT-CTCCCATCAG---ACCCCCTCTTTTGTTTCAATCCTGAGGCTTTTGAGAGATTGCAATGGCCAGCTGCCTAGTCAGTGAATTCAGCAAACTGAAAAAC-ACT---TCCACCAAAATGTCTGGAGAGGCATCCTGGAAGACACTGAAATTC----AGGCACCTCACCTCATAATTCTCTA---GACAAAAGCA-----GTGTCTTCAATG-CTGCCCTAAGAGTCC a score=76749 s hg19.chr6_ssto_hap7 2019685 2280 + 4928567 AGACTTCTAGTTTCACAAATCCCCGATGTCGGTTTCTCTAAACTATTTTATTC-TTTGAACATACTCTCCAGACAACATCGCTATCCTGAAAAGCCCTTGCTGCAATTTTGTTTCTCTTTCAAAACA--ATGGCTCGAAAATTTCCAAGGAAATAGCAAGAGGGCGATTCCCTTCTTGAAGTATTTGAGGGAGCAGAAGCTTACTGAAGTTCATGCCTTGGGTCACCAAAGGCCAGG------GGAGGCAGAGCACGGTGCCAGACTTCTCCCCATTTTTCGCTGAACTAAGCAATCCTTTCTCCCCTAGAGGTACTGCAGCTGGGAGCTTTCAGGGCGTGTCTTCCCCACCACCCAACTTCTGGAACCCCAGACTTCTCAATTCCTGTACCCCCAAGAACTG-CTCACTTTTTGTACAAAAACCTCAGGCATAGAGGAAAGGAATCTTGCGCAAGGTCGTTTTTCATTTACAAAACAAAAAC------------------CCCATGAAAACCAAA---CCGGTACCCACCCATTCGTCACTTCATTTTGCAGCATGGACAACAATAGGGGACTACAACTCCCAAAGAGGACTGCGCTCGTCCACTGGCTCAGAGGCCAATGGACGCCTGGTACATGACCGGCATCGACTAATCAGGGCCAGGCTCGATGAGGCTTTGTCTCCCTACCGCGCGCGGGGCCGATTCTCCCGCCTCCCAGCCCCGGCGCACGCGCGCCCCGCCCAGCCTGCTTTCCC----TCCGCGCCCTCCCCTCTCCTTTCTCCCTCTCAGAACCTTCCTGCCGTCGCGTTTGCACCTCGCTGCTCCAGCCTCTGGGGCGCATTCCAACCTTCCAGCCTGCGACCTGCGG----AGAAAAAAAATTACTTATTTTCTTGCCCCATACATACCTT-GAGGCGAGCAAAAA------AATTAAATTTTAACCATGAGGGAAATCGTGCACATCCAGGCTGGTCAGTGTGGCAACCAGATCGGTGCCAAGGTAAGAATTTTACACCT---CTTTTA-----TTTCTTTTTACAAGGAAAA---ATCCAGGTAAGTTATGAAAAAATGGTTGTGGGGCATTTGCACCCGCTATCCTTAATCAAGATTTGCCCCTCTCAAGTTTGTTACATTTATATATATAACA--ATTGTAGCTAGCATTTGCCTTTGGAAAGCTGGGAATCATTTTTCTTGGCAGGCACATTTTGGAGAAACTAGTAAAAGGGCTCTTCGGGTTTGGGGGCGGGAAGACCGAGGACTTATAAGATGTTACTTAAAAGGGCTTCTAACGGTCCGAGAACCGGGCAGGGAGAGAGATGCGGAAACGGTCGCAGACAAAGCGGGGCGAGGTTTTGCCCATGTGCATCCCGCCCAACCCCCCTGCGGGGTACTTAGGGCCAAACCGGAGCGGGAAGGGGTGAGG----CCATCGGGCGGCTGCAGAGAGCTCCAGCGC--------AAGGGTGGGGGGCGATGCGCCAGGGTGGGCTGCGCTGGGCGCTACCTTTCACAAAAGACCAGGGACCCCAACGCGCCCGCGACCCCAGAGGGCCGGTCCTGTATTTGTTCCTGGGTGGAAGGAGAATAAGAACGGGATTAATTTTACTTGCTTTCATGGCCCCTAAGAGAGACTTTTTTAGGGCGTGAACAGATATGTCGAGAAAATGGGGGTGTGTGGTTTTCTTTAATGAGTCCCTCAGGACTTAATGG-GAGAGAA------AGAATCC---TTTAAATCAAGGGGTAGAAATGTAGCGAAGGAATAAAAATTCCGAGGCCAA-----------GGGGGATTTTTTTTTTTTGCGCGCGGTTACAGTGTAGCGGGGGAGGGGC-GGGAGGAAGTGCGGCTGCTACGTTGTAGCAGAAgggcggggccctgcggggcggggccggggcgccgtgggcgcgcggggACAATGCGGCGTTGCCCGCCGGCAGGGGCGCGCTACCTTGGGCCCCGCCCCTCGCGCGCGGAATTTTTGTCCCTGGCCCCGCCCACGCGCGAAGTCT---TTTGTCGGCGGCTCGACCTGCGCGTGCGCCGCAGTCACGTGGAGGGCGGGGGGGGTGGTCGACTGCGGCGGCAGCTCTTTCCTCAGACCCCCAGCCTTTTGTGCGCCG-------------------CGCGGTGGG-----------------GCGGTGCCCA-------GCTTGGGGGAAGGAGAGCGGCGCTTATCGAAGTGTGGTCGACCTCCATCCGCCCACCGAGCACTTGGGACCCGC---TGCACATATCCAGAGCAGGGAAAGCTGTGGCTTTCTCGGGGGAGCGAGTGTCTAGGGGAAGGGTGTGGCAGGCCCACGGGATGCC----ATGCCCTAGAACAACGGCCT----GAGCGCTTGTGGAATTAAAATG s canFam2.chr12 3513357 2269 + 75515492 AGACTTCTGACTTCACAGATTCTACATACCAGCTTTTCTAAACCATTCAATTTATTTGAACACACCCTC--AATTACATCTCTACTCTGAAAACCTATTGCTGCATTTTTGTTTCTCTTTCTAAACATTATCATTAGAAAATTTCCAAGGAAATAACAGGAGGGCCATCCCGTTTTTCC--TATCTGGGGGAGCAGCGGCTTCCTGGATTTCATGCCGTGGGTCACCGAAGGACCCGCTGTTTGCTACCAGAGCAGGGTGCCGCATTTCTCCCCAGTTTTAGCTGAGCTAAGCAGCCCT--CTTACCAAGAGCTACCGCAGCAGGGAACGTTCAGGGCGTGCCCACTTCGCCTTCCAACTCCTGGCACCCCAGGGTTCCCAATGCCTGTATCCCCCCCAAATGACTCCCTTTTAGTACAAAAAACTCAAGTGTAGGGGAAAGAAAT-TTGCCCAAGGTCATTTTTCATT-AAAAAACAACAACAAGGCCAACTCTACCCCCCCCCCCCCAACCAAAAATCCAGTATCCACTCATCCCTCCCTTCATTTTCCAGCGTAGACAACAATGGAGGACTACGACTCCCAGGGAGGCCAGCGTTCATCCACCCGAGCGGAGCCCAATAGACGAGACCTACGTGACCGGCACTGACCAATCGGGGCCCACTCCAGCGAGGCTTTGTCTGCCTGCCGCG-GCGCGGGCG-CTCTCCCGCCTGC-AGCCTCCGCGCACGCGCGCCCCGCCCTGCCCGCCTTTCCGCCTTCTTCGCCCTCCCCGCTTCTTTCTACATCTCA--ACGTTCTTGTCGCTGCGCTCGGACCTCGTTGCTCCAGCCTCTGGA-CGCGTCCCATCCTTCCAGCCTGCGAATTGCAGTATAGGAAAAAACCCCATCTCACTTTCTGCCCCGTACACACCTTTGAGAGAAGCAAAAAGAATTAAAATAAATTTTAACAATGAGGGAAATCGTGCACATCCAGGCCGGTCAGTGTGGTAACCAGATCGGTGCCAAGGTAAGAATTTTAAGCCTTTTCTTTTAACTATTTTTTTTTTAGAAGAAAAACAAATCCAGCTAAATGATGAAGAA-----TGTGGGACATATTTGCGTTCCATCCATTGTCCCGCTTTGCCC-TCAAAAGTTT------TCCATATACAATACACGGTTGCAGCTAGAATTTACTTTTGAAAAATGGGGGA--ATTGTACTTGGCTGGCTAATTTTGGGTGAGCTTTTGA--GGACGTTTCGGGTTTGGAGTCGG-AAGACTG--GCTCTTTAAAATTTTACTTGAAAGTG-TTGTAGTGGTCCGAGGAACGGGGAGAGAG-GAGATGCGGAAACGGTCCGAGATACAGCGCGGAGAGGCTGTCCCCGTGTGCATCCC------CTCCGCGGGGAGGGGCCCGGCTCCA---CGGAAGGGAGGGGGACAGGGAGCGCGGCTGGGCGGCGGCCGCGGGGTCCTGGGCCCACGGTGGGGAGGGGGGCGCGACGCGCCAGGGTGGGCTGCACCGCGCGGTGCCCGCCCCAAA-GATGAGGG---------------CAGTCCGCGAGGGGCGGTCCCGTAGGCCCTTGTGGATGGAAGACTGGTCCCTGCAGTATTAATTTC-----CTTTCATCTCCAGTAA-AGAGACCCTTTTAGGGCGTGCACCGATATGGAGAAAGAGGGCGGGAGGATCCTTTTCTTTCAAGGGTCCCTCAGGGCTAAACGGTGGGAGAAGGGCCGAGAAGCCGTACTTAAAGCCAGGTATAACAAGCTAGCCAAGGAAGAAAA--TCGGAGGCTCAAGCGGGAGGTGGGGGTAGTTTCTTTTTCTGCGCGCGGTTACAGTGTGGCGGGGGCAGGGCAGGGAGGAAGTCCTGCTGCTACGTTGTAGCC------cggggcggggcggggcggggc-ggggcTCCAAGCGC--------------CGGGCTGGCCGGCTGG---GGGCGCGCTA----------------------GCGGCA--------CAGGCCCCCGCCCACGCGCGACGCCTCCCTTTGTCAGCG--CCGAC--GGGCGGGCGCCGCAGTCACGTGGAGGG---------GCGTCCACTGCGGCGGC--TTCTGTCCCTCG--CCCCGGC---TCGTGCGCGGGGGGAGGGACAGAAGCCGCCGCAGTGGACGCCCCTCCACGTGACTGCGGCGCCCGCCCGTCGGCGCTGACAAAGGGAGGCGTCGC--------GCGTGNCGCACCGC-----GTCCACCGGTCGCCGGGCCTCCGCGGCTGCAC-----CCGAGCAGTGGACGCTGCAGCCCTTAGGGGGCTGCGGGTGTCTGGTGGA-GGGCGCGGCAGGCAAGCAGAGCGCCCGGTAGGCGGCGGAGGTGCGCTCTCCGTGTGCGTGTTTGCACTTGAAATG a score=159331 s hg19.chr6_ssto_hap7 2022555 3142 + 4928567 TGGTAGTTGGG--GACATAGTTGGCTGGGACTTGACCTGTTGTGGTCTCGTTGCTCCCCCTCGGCAGTTCTGGGAGGTGATCAGTGATGAACATGGCATCGACCCCACCGGCACCTACCACGGGGACAGCGACCTGCAGCTGGACCGCATCTCTGTGTACTACAATGAAGCCACAGGTAAGGGCAGGAGCCCGGGCAGCTCAGGTTCCCTTCCCTGTCTCCCACTTATCTGGGATCTC-TTTCCATTTCTGGGCACGCCTTATCCCCTTTGGGTGAATCTGTCATTT----------TGTCCCTTTCGTGAACCACCGTCGGGGCCAAAGACG---TCTGCTGCCACCTGGTGGCGGGACCTGGAATGACAAGTCTCTGATCCCTGCTGTCTCCCATTTCCAGTATATCTATAAACCTTCCCTTCTGCCAGATTTCACAGCTCTTAACTTTATTCTCTGTAGGTGGCAAATATGTTCCTCGTGCCATCCTGGTGGATCTAGAACCTGGGACCATGGACTCTGTTCGCTCAGGTCCTTTTGGCCAGATCTTTAGACCAGACAACTTTGTATTTGGTGAGTTATATAGATGATATTAGCAGATGATATACCATCGTGTTCAACTTATTTGGGTGCAAGGACACAGCAAAAGTTAGGAGATGATTGTTG-TATTGGAGTGCTAATACAGAAATGTGTTCTGAAATCT--AACGGAGGGTAGAGGTAGTGCCTACTATTGCTGGTAAATTATGGGGCAGTAGGGGGAGAATATATCACAG-TGAAGGAGAAAGAAGATACATCCGAGGGAATTATTTGAAAAGTTGAAAGATGGAAACA-TCATGTATCTTCCATACCCTGTTAATTGAGC---TTTTCTCCTGACTGCATTCCAGGTCAGTCTGGGGCAGGTAACAACTGGGCCAAAGGCCACTACACAGAGGGCGCCGAGCTGGTTGATTCTGTCCTGGATGTGGTACGGAAGGAGGCAGAGAGCTGTGACTGCCTGCAGGGCTTCCAGCTGACCCACTCACTGGGCGGGGGCACAGGCTCTGGAATGGGCACTCTCCTTATCAGCAAGATCCGAGAAGAATACCCTGATCGCATCATGAATACCTTCAGTGTGGTGCCTTCACCCAAAGTGTCTGACACCGTGGTCGAGCCCTACAATGCCACCCTCTCCGTCCATCAGTTGGTAGAGAATACTGATGAGACCTATTGCATTGACAACGAGGCCCTCTATGATATCTGCTTCCGCACTCTGAAGCTGACCACACCAACCTACGGGGATCTGAACCACCTTGTCTCAGCCACCATGAGTGGTGTCACCACCTGCCTCCGTTTCCCTGGCCAGCTCAATGCTGACCTCCGCAAGTTGGCAGTCAACATGGTCCCCTTCCCACGTCTCCATTTCTTTATGCCTGGCTTTGCCCCTCTCACCAGCCGTGGAAGCCAGCAGTATCGAGCTCTCACAGTGCCGGAACTCACCCAGCAGGTCTTCGATGCCAAGAACATGATGGCTGCCTGTGACCCCCGCCACGGCCGATACCTCACCGTGGCTGCTGTCTTCCGTGGTCGGATGTCCATGAAGGAGGTCGATGAGCAGATGCTTAACGTGCAGAACAAGAACAGCAGCTACTTTGTGGAATGGATCCCCAACAATGTCAAGACAGCCGTCTGTGACATCCCACCTCGTGGCCTCAAGATGGCAGTCACCTTCATTGGCAATAGCACAGCCATCCAGGAGCTCTTCAAGCGCATCTCGGAGCAGTTCACTGCCATGTTCCGCCGGAAGGCCTTCCTCCACTGGTACACAGGCGAGGGCATGGACGAGATGGAGTTCACCGAGGCTGAGAGCAACATGAACGACCTCGTCTCTGAGTATCAGCAGTACCAGGATGCCACCGCAGAAGAGGAGGAGGATTTCGGTGAGGAGGCCGAAGAGGAGGCCTAAGGCAGAGCCCCCATCACCTCAGGCTTCTCAGTTCCCTTAGCCGTCTTACTCAACTGCCCCTTTCCTCTCCCTCAGAATTTGTGTTTGCTGCCtctatcttgttttttgttttttctt---ctggggggggtctagaacagtgcctggcacatagtaggcgctcaataaatac---ttgtttgttgaatgTCTCCTCTCTCTTTCCACTCTGGGAAACCTAGGTTTCTGCCATTCTGGGTGACCCTGTATTTCTTTCTGGTGCCCATT---CCATTTGTCCAGTTAATACTTCC-------TCTTAA---AAATCTCCAAGAAGCTGGGTCTC--CAGATCCCATTTAGAACCAACCAGGTGCTGAAAACACATGTAGATAATGGCCATCATCCTAAGCCCA----------AAGTAGAAAATGGTAGAAGGTAGTGGGTAGAAGTCACTATATA-AGGAAGGGGATGGGATTTTCCATTCTAAA--AGTTTTGGAGAGGGAAATCCAGGCTATTAAAGTCACTAAATTTCTAAGTATGTCCATTTCCCATCTCAGCTTCAAGGGAGGTGTCAGCAGTATTATCTCCACTTTCAATCTCCCTCCAAGCTCTACTCTG-------------GAGGAGTCTGTCCCACTCTGTCAAGTGGAATCCTTCCCTTTCCAACTCTACCTCCCTCAC--------TCAGCTCCTTTCCCCTGATCAGAGAAAGGGATCAAGGGGGTTGGGAGGGGGGAAAGAGACCAGCCTTGGTCCCT-AAGCCTCCAGAAACGTCTTCTTAATCCCCACCTTTTCTTACTCCCAAAAAAGAATGAACACCCCTG---AC-TCTGGAGTGGTGTATACTGCCACATCAGT-GTTTGAGTCAGTCCCC---AGAGGAGAGGGGAACCCTCCTCCATCTTTTTTGCAACATCTCATTTCTTCCTTTTGCTGTTGCTTCCCCCCTCACACACTTGG-TTTTGTTCTATCCTACATTTGAGATTTCTATTTTATGTTGAACTTGCTGCTTTTTTTCATATTGAAAAGATGACATCGCCCCAAGAGCCAAAAATAAATGGGAATTGAAAAAAGCTGCGAGATGTGTGCTTATTTAGGGAAACACGGCTGGCTGATGGA-GGCATGGGGCCTGAGTTCAGTTGCACTGCTCTCCTTAAATTGACACTTAATATTGAGTCCCTGTCCTACggattcaaccaactggatattgggaaaagagttgtactggacatgtatagacttctcattattccctaaacaataa s canFam2.chr12 3515626 2955 + 75515492 TGTCGGTCGGGTGGGCATCACTGGCTGGGACCAGAGCTGTGCAAGTCTCCCTGCTCTTCCTCGGCAGTTCTGGGAGGTCATCAGCGATGAACACGGCATCGATCCCACCGGAACCTACCACGGTGACAGCGACCTGCAGCTGGATCGCATCTCCGTGTATTACAACGAAGCTACAGGTGAGGGCGGGAAC--GGGGAACGCGGGG------------CTCCCACTTCTCCGGGGTCTCCTTTCCAGCCCTGGAGAACCC-----ACCTTGGGATGGGTCTGATTTTTAAAGAAGGTCTTACGCTGATTTGACTTCACGGTGGGGCAAAAGATCAGCTCTGCTGCCCCCTGGTG--------------------TCCTCCAGCTCAGCT-----CCATTT--------------GGTCTTCTGGTCCACCAATTCTTATT--------CTTTCTTCCATATAGGTGGCAAATACGTACCTCGTGCTATCTTGGTGGATCTAGAACCTGGGACCATGGACTCTGTTCGCTCTGGTCCTTTTGGGCAGATATTCAGACCAGACAACTTTGTTTTTGGTGAGTTATGCACAT---ATTAGTAG-----------TGCTATTCAGTGTATTTGAAGG-AAGGAGACTGCAAGAGCTAAGAAGTTATTTTTAATGCTGGAGCGTTTATCTGGGGATATGTTTTGAGATCTCTAACGCAGGGTGTTGGGAATGACCGCCTTAGATGGTAGATACTGAGGCAG--------GGATGTATCACAGGTGAGTGAGAAAAAAGGCACATTCGTGTATGTTATTTTAAAAGCTGAAGAGTGGAAATGGTCCTTTATCTTTGATGCTTTGCTAATAAAGAGAATTTTGTTC--ACCTCATTCCAGGGCAGTCTGGGGCTGGCAACAACTGGGCCAAGGGCCACTACACAGAGGGGGCTGAGCTAGTGGACTCAGTCCTGGATGTGGTGCGGAAGGAAGCTGAGAGCTGTGACTGCCTGCAGGGCTTCCAGCTGACCCACTCACTGGGTGGGGGCACAGGCTCTGGCATGGGCACGCTGCTCATCAGCAAGATCCGAGAAGAGTACCCTGACCGCATCATGAACACCTTCAGTGTGGTGCCCTCCCCCAAAGTGTCTGACACGGTGGTTGAGCCCTACAATGCCACCCTCTCTGTCCATCAGTTGGTAGAGAACACGGATGAGACCTATTGCATTGACAATGAGGCCCTGTACGACATCTGCTTCCGCACCCTCAAGCTGACCACGCCAACCTATGGGGACCTCAACCACCTTGTCTCAGCCACCATGAGTGGTGTCACCACCTGCCTCCGCTTCCCTGGTCAGCTCAATGCTGACCTCCGCAAGCTGGCAGTCAACATGGTGCCCTTCCCACGTCTCCATTTCTTCATGCCTGGCTTTGCACCTCTGACCAGCCGTGGAAGCCAGCAGTATCGGGCCCTCACTGTACCTGAACTCACCCAGCAGGTCTTTGATGCCAAGAACATGATGGCTGCCTGTGACCCCCGCCATGGCCGTTACCTCACTGTGGCTGCTGTCTTCCGTGGGCGGATGTCCATGAAGGAGGTAGATGAGCAGATGCTCAACGTGCAAAACAAGAATAGTAGCTACTTTGTGGAATGGATCCCCAACAATGTCAAGACCGCTGTCTGCGATATCCCGCCCCGTGGCCTCAAGATGGCAGTCACCTTCATTGGAAATAGCACAGCCATCCAGGAGCTTTTCAAGCGCATCTCAGAGCAGTTCACAGCCATGTTCCGGCGCAAAGCCTTCCTCCACTGGTACACAGGTGAAGGCATGGACGAGATGGAGTTCACCGAAGCTGAGAGCAACATGAACGACCTTGTCTCTGAGTATCAGCAGTACCAGGATGCCACCGCAGAAGAAGAAGAGGATTTCGGTGAGGAGGCTGAAGAGGAGGCTTAAGGCAGAG-TACCATCACCTTAGGCTTCTCCATTCCC-------TCTTCCTCAGCTGCCCCTATCCTCTCCCTCAGAATTTGCATTCTCTGCCTCTTATTTTTTTTTCCCTTTTTTTTGGGGCGGGGGGGTcctagaacagtgcctggcacgtaataggcgctcaataaatacttgttgtttgttgaatgTCTCCTCTC---TTCCACTCTGGGAAACCTAGATTTCTGCTGTTCTGGGTCACCCTGTGTTTTCTTTTGGTGTCCATTTTCCCGTTTGTGCAGTTGATATTTCCCTTTGTTTTTTAAGGTGATTCACTGAGAAGCTGGGTCTCATTAGATCCCATTTAGAA-----CATGTGCTGAAAAC-----------ATCGCCACCATCCTAAGCCCATGTGGTAGCCCAGGGGAAAGGAAACCAAGCTACCTCATAGCAGTAGAGGTACATATCGAGAAGGTAGGGTTTTCTATTCTAGAGCAGTTTTAGAGAGGGAAATCCAGGCTCTTGAAGT--CCAAA--TCCAGGAAT----CTTCCTGCTCTCAGCTTCAGGGGAGATGTTGACAGTATTGTCT--ATTTTTAGTCTTCTTCCAAGCTCTGTCCTGAGCTGTTTCTTTTGAGGGGTCTGTGCCACTTTGTTGAGTGGGATCCTTCCC--TCCTACATAAACTGCTTCACGTGTTCGATTTCTTCCTTTTCCC------------------------------AGGGGAAAGAGGGACTGGCCTTGATCCCTAAAGTCTGGAAAGGCCCCCTCCCACTCCCCACTTTTTCTT------AACAAAACTCCAGCTCTACTGTGTACATATAGAAAAGTGTGTATTGCCACCTAAATCATTTGAGTCATTCTTCCAGAGGGGACAAGGAGACCCTCCACC----TTTTGGCAACACCTCAGCTCTTCCTTCTGCTATTCCCTTTCCCCACACACCCTTGATTTTTGTCCTGTCCTACATTTCAAATTTCTACTTTGTGTTGAACT---TGCTTTTTTTCATATTGAAAAGATACCATTGCCCCAAAAGCCAAAAATAAA-AAAACTGAAAAAAAGTTGCGAGATGTGTGCTCATTTAGGGAAA----GATTGCCATTGGACAACCTGAGGCTCAAGTTCAGCTACGCT---------------------------------------------------------------------------------------TATACTCTGCTCTT------------AATAA a score=55 s hg19.chr6_ssto_hap7 2025841 70 + 4928567 actggTAAGGACACTGACTGCTTTATAGACCCTCACATCATTGTTTCTGGTACCCAAACTGCTCTGAGCA s canFam2.chr12 3518581 39 + 75515492 ACTGATGAGAATA-------------------------------TCCTTGTACTTAACCTTATCCTGGTA a score=4983 s hg19.chr6_ssto_hap7 2026022 315 + 4928567 GAGCCAGTGCACCAGGCCCACCAATGAGTCT---TAACTGGGGAAGGCATAGGCTTAGATGCAGGATCCAGGGATGGAAAATGGAAGCTGAGAAGAATGACAAATCACGTGTAACtggtttccagaccagcatccacatcctctgggaacttgcagaaataaatgcaagtttttcatcccacccagatgtactgaaccataaaT-----------------------------------------------------GGTTGAAC------------TGGCCTTGGCCACCCAGC----CCAGGATTCCTTTGGGTTATGTGTACCCATGGCCATTTCCTGTGATCCTGTGG------GCTTAGTCAACCTATG----ACACCAAGATAACTAGTGA s canFam2.chr12 3518620 378 + 75515492 GAACTATTTCACCATCCTCACTACC-AGTCTCAATAACTAGGATAGGCATAGACTC--CTACAGGATTGACAG-----AAATGGGAACTGAGATGAATGTTGAATAGTGCGTAAGTGGCTCCCAGATGAAT-----CGCCTcttgggaacttgtgtag--aaatgcagatcaccaggcctacccagatgtactgaaccagaaaccagctgactagtaatctgtttagcagtactccaggagaatcttgtgaatgcAGAGTTGAACGCTATTATTGCACTACTTTCAGTGCACAGCACATCCAGGATTCATTTGAGTTATGGGT----CTTGCTTTTTTCTCTTACACCTTGGCAATTTTCTCATTTAACTCCAGGGAAAGATAAAGATAACTAGTGA a score=6848 s hg19.chr6_ssto_hap7 2026987 325 + 4928567 GGATTGCTACCTTATGGTCCCATTCTAAAACAATCTGTACCATCTACTACCTCATACTTTTA-AGTTCACAATGCAAGTCTCAAAGCTACCCTGAAAACAATAATTCCTTTTGCCATGTTTTCAG-GAATTCTAGGAACTAGTATTATTCCCAACATTCCTTCTATTTTAGCATGCTTTTCTGACTATAATACACTGTTGGGGGGAAAAATTAACTCTAAAACTCTTGACAGTATATAAG---TAACTTGCTTTTCTCCCATTCTAGAAAGCCTATTGTATGCAAGAAAGCCTATTGTATGCAAGGGAAGAAGCTACATTCTAGCATTCA s canFam2.chr12 3518998 287 + 75515492 GGGATGCTACTCCATGGTCCTATTCTAAAGTA--CTGTTTCACCAAATAAAT-ATACTTTTCTAAGGCACAAAATAAGTC----AGCTACCCTGGAAATTTAAGTCCATGTAATTTTCCTTCCAATTAATAAAGGGAACTAGTGCAGTTCTCCCAATTTCTTCCATTTTAGCATGTTTTGCGTATTACCA---ACTTTTGCCAAAGAAAATTG-----------TATGACGTTAACTACGTGTTAACTTGCTTTTCTCCCATTCTAAAAAG--TGTTGAATG--------------------AAGGGAAGATGCTACGTTCCAGTATTAA a score=29352 s hg19.chr6_ssto_hap7 2027814 735 + 4928567 TTATTAGTACTTACTTACAGCAATTTATTTGGGTAGCAAAGTTGAAAACCTCCAGCCCATCCCTCAGTCTTGGTCAGGAAAATATTCTAGACAACAGGCTCAAACAGTCTGATTTAATTAGGAAGTTAAATAAGTTGAGGTGGGGTGGAGTGGGATCATCAGAAGGCTGACATGGGACCGCTGGAG---TTGGCAATCATAGCAGTGTGAGGTTGGCAAGGGGAGCAACCCC----CTTCAAGACAAGGCACAAACTATTTGGCAAGGAGAGATGAGGGGTGGGACCTCACTGTCAATGGACATGCTCAGGGAGGCCAGTGGGTTACATGCAACAGGAGGATCATTCAGGCAACTTCAGCTATGAGGCTGGGCATCTGTGAGGGCTGAAGGCTCAGGCTGTTCTCAAAGGCTTGTGATTCACCTGGCAAAAAGACAACAGTAGATGACACTTGGGAACATTCGGGAGGCTGAGGCCCCTACTCTCCCGGGCCCCAGTTTAGACGAATGGGCTATAGGCAGAACACACACGGCCAGG----------GTTCTTTCTGGTGCCCTACC---ACCTGTTTCCCCAAACAAAGACATCAGGACCCACATACAA---TAAATCACTG-AAGAGAGGAGAGGGGG-CAGAGCCTTGTT--TGCACACTCTCCTTAGCTCTGAATAT-----------TCTACTGCAGGCCTCCAGGAGGCTCCAAGGAACCCAGCTTGAAGGTCATTGGTATGATCCAGTGCTTTTATTTACATACGCt s canFam2.chr12 3519325 730 + 75515492 GTATCAGTACTTTGTAACAGCAACTCATTTG----ATAAAGTTGAGAACCTCCAGGCGATCCCTCAGTTTTGGTCAGGAAA--ATTCTAGACCATAAATGTATACAGTC-----CAGTTAGAAAGTTAAATTGCAGGGTGCGGGGT-GAGTAGGATAATCAGAAGGCTGGCATGAAACCCGTGGGGGACTGGGTAGTCTTAGCAGTGTGGGGCTCGGAAGAAGAGCAACCCCTCCTCTCCAAGGCAAGGCACAAGCTATTTGGCAAG--GAGATGAGGGGTGGAACCCCATTGTCAA-GGGTGTGCTCAGAGAAGCCAGTTG--TGCATGCAGTATGGGGACCATTCTGGCAA------CCATGAAGCAAGGCATCGGCAAAGGTTGAGGGCTCAAGCTGTTCGCAGAGGCTTGTGGTTAACCTGGTAAAAAGACCACAGT-GATGACAC--GGGAACCAT-----------GTACCCTGTTCTCCCAGCTCCCCATTTGGATGAA--AGCTACAGAAAGGACACGTATTTCCAGGAAGCATCTAAGTTTTTTCTGCCGCCCTACCTTAACCTCTTG--TCAAGC--AGTCATAAGGAGCCATGTACAGCACCAAATCACTGCAAAGGAGTGGAGAGGGCCAAAGCCCTGCTAAAGTAGACTCTCCTTGGCTCCTAATCTCATTCAGTGCATTCAGTGCCAGCCTCAAGAAGGCTCCAAGGAACCCAGCTTGAAGGTCACTGCTACAGTCTATTGTTTTCACTTAAATATCTT a score=11774 s hg19.chr6_ssto_hap7 2029476 245 + 4928567 tacacataatgctt-actatataccaggcactattctaaacactgcaaa---tatttgctcgagcccctcaacaattcaacagggtagtttctaattattaacccaattttaagatgaggaaacaggtatagagaggttgattacttgtccaagattacagctagcaggcattgtagctaggattcgcaacaaaacag--tggttccagagcctgtttgctgacttctaccatgatctacAGGTGAATTAA s canFam2.chr12 3520284 246 + 75515492 catgtatagtacttaactatgtgtcaggcactgtcctaaacactgccaattttactcatttaatccctgtaacaattcgaca--gtaaatcct-attattaacctgattttaaggtgaggaaagagatacagagaagtagctaacttgtgtaaggtcacagctagcatgcactggggccaggattcacaccaaaacagtatgattccagagactgct--ctGACTTTTATCATAATCTATAGGTGAATAAA a score=84675 s hg19.chr6_ssto_hap7 2029729 1556 + 4928567 CTGAGAAAAGCAGTGATATGCCCTAGAATTAATTAACTGTCAATAGGCTGCAACTAGTTCCCTATACtagtggggtgaccacaagcacaggttgcag-agacagtcgacctggattt-cactccagctgcactagcagaatgagtagg------------aacatgctggatgttgagtttctggactttgtaaaatcctatataccctaatggtagtttgatttaaaacaac---------tcatttatgtagaagcttagcactgtgtctggcacacagaaagtgattaataaacatcaatga--ctCCCAGGCCTGGATGCTGGTTAAATGCTAGGCATACTGTGTCACACAACACAGGAACCTAGCAATTC--------TCCTCAGCTCCAACCTGAGA---CCTCACCTGGGAGATGCTCACGCCTGTGAGTCTTTCCACACTCTCTGGCAGGCGAGTTAGAATGTCCAGTACTTCCCCAGTCACTTTGGCTGCCCCCATGGTCCCACTGCCGCTGGACACCAGTGTGATCTTATTGGCTGAAGTCAAGGGACCACTGATCTCCTCTGCCACCTGGCAGGAGAGAGACACCCACTCAGTGCCCATGATCTGACCACATTCCTCATAAAACAACTTACTCTGGGTTTTAAGGTCCTCGTTC-----CACT-------GATCATCCTTCCTCACTTTGGTCACTAA----TAATTCCCACCCCTAATTTAGAGTCCCCCTAGGCTGTTTCTCCCTAAGCCCCTCACTACACCCCACCCCTTAGTCCCTGGTTCTATTTCCTCCTTTCTTGGTGCCCACATGACCTCCAGACCTGGGGCAGCTTCTCTAGCAGCATGTCCAGCTGAGCAGCCTCTTGGTACAGCTGGAAGGCTTCTGCCTTCTTGGCCATCTGCTCAGCCTCGGCTCGGGCTCGGGCCCCTATGGCAAAGGCCTCAGCTTCCCCACGCATCTGAG--GGTTAAGGATGCTTGTGAGATTGACGGAAATCATTAAGAACAAGAAATCCCCGATCAAGCAGCAACCCCCACCCTCTCCACAAGCCAGCATGGAACTGCCTCTTAACTCACCCGCACAGACGCGGCTTCTGCCTCCGCCTGCATAATTAGTTGGGACCTGTGGACAGAAGGGAAGTGGAGGGTGGAGCCCAGCAGCCCTTACTCCCAGGAGAAAGGCCCAGTGCTGCAGAGGCAGACGCTCCTGAAACCTGAAATCCATAGGAGTCCAGGTGGTGAAGGCTTCAGCACTCCATCTTGGGGTGCCTAGGTGGCAAGTGAGCTAGGCAGGGTCAGGGAGGGGACATTTACTTCTCTGCCTCGGCTAGGCGCTCCAGCTTGTAGCGCTCCGCTTCCGCTGGCTTCCGCACCCGGGCCTCCAGCTCCTTCTCCCGCCGGGCGATCTCCTGCTCCTGCACTGCCACCTGCTGGGCCCGCTCCACCACCTGCACCTGCACCCGCTGCTCCTCAATCTGCTGCTTAGTCTTGGCCACCTGGGTAGGAGGGTGAAGTCAGGTTCACGCTCTGAGTCAGAGGTGAAGAGCAAGTGCCCGGGAACC-------------------AGAGCTCCAGAGTGGGATATAAAAATAGGAGCCGG s canFam2.chr12 3520735 1576 + 75515492 GAAAGAAAAGCAGTGATATGCCTTGG----AATTAACTGTTAATAGGCTGCAACCAGTTCTGTGTACTAGTG---------CAACcataggctctagaaggcagtcagcctgggtttgaagtctagctttaccagctgtatgtcaggggcaaaattccttaatatattggaagtt--gtttctctactttgtaaaatactatatacccaaaggatggtttga-ttaaaacaacaacaacataccattggtgtagaggcttagcatggcatctagcatatagaaagcAA-----AACTATCAGTGGCCCCCCCAACCCTCCTTGCTGGCCTAGTGCT-GGCCTGCTGCATCACAT-GCCCAAGAACCCAGAAATTCACAGAAAATCCACACCACCCACCCTAGAGACCCTCACCTGGGAGATGCTGACGCCTGTGAGTCTCTCCACACTCTCTGGCAGGCGGCTCAGGATGTCCAGTACTTCTCCGGTCACTTTGGCCGCCCCCATGGCCCCACCTCCACTGGACACTAGTGTGATCTTATTGGCTGAGGTCAAGGGACCACTGATCTCCTCTGCCACCTGGTAGGTGAAAGATACCCACTCAACACCTGTAGTCTGACCACACCCCTCCTAAATTGCTTTACGCTGGGCTTCAAGATCATTGATCATCTTCACTTTGTAAGGATTATCTTTCTTTACTTTGGTCACTGGGTTCTAATTCCTACCCCTCGTTTATGGT-CCCCTAGTCTG-TTCTCCCCAAGCCCCTCATTTCCCCCCACCCTACACTCCCTGGTTCTGT----TCCTCTCCTGGTGCCCACACAACCTCCAGACCTGGGGCAGCTTCTCCAGCAGCATGTCCAGCTGAGCAGCCTCCTGGTACAGCTGGAATGCTTCTGCCTTCTTGGCCATCTGCTCGGCCTCGGCCCGGGCTCGAGCCCCGATGGCAAAGGCCTCAGCCTCCCCACGCATCTGAGAAGGGAAAGGGAGACTGTGGTGCTGATGGCTGTAGTTAAGGACAAGAAA-CCCAGCTCAAGCAGCAACTTCCATTCCCTCTGCAAGCCAGCA-AGAGCCACCTCTTCACTCACCCTCACCGACTCCGCTTCTGCCTCAGCCTGCATAATTAGCTGGGACCTGTGCACAGAAAGGAAGAGGAGGGAGGGGCTGAGGAA-------GGGCAAAAGGCAGGCCC--TGCTGGAGAGACAGAGGCTTCTGTAACCTGAGTTCCATAGGAGTTCAGGTAGTGAGGGCCTCCACTCTTCACCTGGGGGGAGCCAGATGAGAAAGGAGCAGGATAGGGCCTGGGAGCGGGTGTTTACTTCTCTGCTTCAGCGAGGCGCTCCAGCTTGTAGCGCTCAGCTTCCGCTGGCTTCCGAACTCGGGCCTCCAGCTCCTTCTCTCGCCGGGCGATCTCCTGTTCCTGCACTGCCACCTGCTGGGCCCGCTCCACCACCTGCACCTGTACCCGCTGTTCCTCGATCTGCTGCTTAGTTTTGGCCACCTGGGAAGGAG-------------CAATGCTCAACCTCAGGGCTGAAGAGCAAGTTCCCAGGAACCACAGAGAAAAGCCAGGGCAAGGGCTCCAGGGTGAGATATAAAAACAGAGTAAGg a score=1979 s hg19.chr6_ssto_hap7 2031591 58 + 4928567 GGAGCAGGTGCATGAAGGTGGGTTCCCTCCTGTCTGCTTGGCCAGTCCAGTGGAGTCC s canFam2.chr12 3522532 54 + 75515492 AGAGTAAGGACATGAAGTCAG----TCCCTGGTGGGTTCAGCCAGCCCAGTGGAGTCC a score=12167 s hg19.chr6_ssto_hap7 2031649 403 + 4928567 AGTGTTTCTC-TGATGAGCCCCCGT-TTAATCTATTTTTCCCACGTGTGCCCCCTTCTAGAGTATAAATACCTTGAGGGCACTGAGCACATGTTGGCTTTCTGCTATCTCCAGTCTTGCTCAAATCCCCCCACTGTT----------GCTGCGATAACCTTAGTGCTAGCCTAGGCTA------------CTGCAATAGCTGACT--TATTTTTTGTGGGGGTGGGGACAGGTG---ATCTTTTTTGTCTTTTGCACATGGTGCAGATTTAACAGAAAAAAAAGTGAACCACGAGG----------CTTCTTCCTCATTCTCCAAACCACCTGGGTCCCTTTCCCAGAGA-AACCACCAAGACCAGCTTCTTGT---GTATCCTTCCAGGGATACTCTGAACATCTACAAGAATGTGTGTATTCATAGAATTCCTCTTATTTAGGC s canFam2.chr12 3522718 428 + 75515492 AGTGTCCCTCTTGTTGAGCTCCCGTATTAGTCTATTTCTCCACAGCGT--CCCTCTCTAGAGTCTGAGAACCTGCAGGGCTCTGA-TGTGCGGTGGC-ATCTTCCACCTCCAGTCat--tcaaatccacccacttctctccatatgagctgctgtaaccgtcttgtaagccaccaccaaactcaccctccctgcaatagcttcctactggcttTGGTGGTGGTGGGG-CATGTATATATCTCTTTTATCTTTTGTATATGATACAAACTC------AAAAAAAATGGACAATGAGAATCAAGGTTTCCTCTACTTATTTCCTCAAACTACCTTGTTCCTTTCCCCAGAGGCAAGCATTGTGACCAGCTTCTTGTGTCGTCTTCTTCCAGGGAGATTCTAAGCATTTACAAGACTGTACAT----ATAGGATTCCTCTT-TTTAGGC a score=4446 s hg19.chr6_ssto_hap7 2032354 85 + 4928567 AGATTTCATCTTCTTATTCCTTGCAGTGTGAGGGAATCAGAAGGCTCTTATCAAGATGCTAGTGAGGAGAGGTGCCAGGCAAGGA s canFam2.chr12 3523146 79 + 75515492 AGATTTCATTTTCTTATTCC------TGTACAGAGATCGGAAGGCTCTTGCCAAGATTTTGGTGAGGAGAGGCACCAGTAGAGGA a score=14373 s hg19.chr6_ssto_hap7 2032741 377 + 4928567 ACATGC--CTTCGTTGTCCCATTGCTCAGGCTCAGCCATGCACCATCATCATTGTAGGTCTCATCGATACATGTGATGCTTCCCCTGCCTCCTACCTTCCCCCGGGCCCATCTGTTCACTCCAGAGAGAAGCATAGCTCTGGAGACGGCACTCTGTACTGTCTTTCACCCTAAATTTTCAAACCCGTTCCAAACTGGCCTCGTTGCCCTCTACACCGGTGTGCAGGAtcac-ctctctcctgtgtcccttaggcaaccatttgtctgtttctttttccttcctgtctatgcccaccttttggtgaaactcaacctccagaagcttcctcagaaagaatataaagacaatattttttctgaggtcttgctttctctgag------at s canFam2.chr12 3523225 349 + 75515492 ACATGCTTCTTTCCTGTCCCACTGCTCCAGCTCAGCCATGTACCATCATCCCTGTGGGTCTTATCAATAGCAGATATGATGCCCCTGCC--------TTTACTGCACTCATCTGTTCAC-CCAGAGGAAAG-GTGCTTCTGGATATGGCACCCTGTGCTGTCTTTGACCCTAAATTTGCAAACCAGTTCCAAACTGAGCTACTTGCTCTCTACCCCAGtgtgcaggatctctctctatattggagccc----------------------ctcctgcctt--tgtttaggcatcctttttgatgaaa--taacccccaggagcttccttggaagaagtatatgggcaatacattttttgagatcttgcttt-tctgagattgttat a score=5222 s hg19.chr6_ssto_hap7 2033420 111 + 4928567 tctacccttctattttaataccagttaggctgaaagcaggctgctatgttgggattaactttccatcagaa-ttctgaaggcattcctccatggttttctagctttttaaga s canFam2.chr12 3523574 104 + 75515492 tctacctttctacttgaatgacaatgagattgagtacag--------gttagaattaattttctatcagcatttttgaaggcactgctccatggtcttctagcttcttgaga a score=5953 s hg19.chr6_ssto_hap7 2034159 206 + 4928567 aatctgaagtcattttgaagcctgcctctttgagatc---tctctctctctagaagctttcata----ttttttgtcctcagcattcttaagtttcacagtgttatgtttcaatgtatatatttttcattcattgcattgggcactta-----------gtagaccatttcaatctaaaacctca----------------------------tttttatataatttttctcagaatgt------ttctGCTCCCAAT s canFam2.chr12 3523678 245 + 75515492 aatctgaagtcattttgatgcttggccctgtgcaatctgttctctctctctggaagcttttatatcctttctctgttctccatgttctgaaatttcatagtgtagt-------------tgtttttcattcattgtattgtgcattgaaacagtccaatgtagaaagtatcaatctagaaagtcatacctttcagaacaaacattaaaaaaattttttccattgattttcctaccattttctttgttctgttcatact a score=11304 s hg19.chr6_ssto_hap7 2035031 325 + 4928567 ctgctcagagggaagaaggtct-caacactgaaaggaagctctgagtatgtgggtgaggcttgctgactttgagcttcaccctacggtgatctggataggccatgtacggagaaacatctgattcaggattttaagttatttctttttggattggtcatgttccccagagcagtcttctgatctcttttttggaagatggaagttctgggagctgagtggggttgagggggttggggttggggttggctctcagtatttagcattcatgaaagttatagtcatttcatgcccctgttactggtaaactatctaggtcctcacctgt s canFam2.chr12 3524478 273 + 75515492 ctgctcacagtgaaggaggtctaaaacactgaaa-------cccagcatgtgggtgag---------------gcttcattctagagtgatctggacaagtcatctgctgaagaacctatgattcagga--------------tctttggattggttgtgttccccagcacagtcttctgatgacttctttggaagatggagggtcttgggcccaaatggggtaaa-------ggagttaggggagactgtcagcatttagcatTCA--------ATGGTCACATTGTGCCC--GTCACTGATAAAATGATTATGGCCTTATCGAT a score=3617 s hg19.chr6_ssto_hap7 2035955 94 + 4928567 tacctgcttagtcaattactactgacttccagtttccaaaatgatgctctggtttccgttc---------ctattttctccatctttTTTTTTTTTAAAGCCT s canFam2.chr12 3524751 95 + 75515492 TACTGGCTTCGTCGATTACAATGgctttctggcttccaaaatgataccatgctttctgttcatcctgatgctattctctccatctgttttc--------gcct a score=2966 s hg19.chr6_ssto_hap7 2036499 180 + 4928567 TCTATCTTTACCTTAAAAAAAATCATTTTagatcgcgccactgcactccagcctgggcgacagagcgagactccatctcaaaaaaaaaaaaaaTCATTTTGGCtttagtgaggttttag-gagagagtaaaattagctacatttgtttaatccatcatctctgaAAAAGAGCCCAACTCAt s canFam2.chr12 3524846 109 + 75515492 tcttcctcttttct---gaaaatcactctg---------------------------------------------------------------------tggtttcagtgaggttttagagagggagtgcaatgaactgtatttatttaatccatcatctttgaaaaagcttccaacttat a score=14533 s hg19.chr6_ssto_hap7 2036977 280 + 4928567 TTGcttcctctctt----------tgcccgttctccacaaggcaaccagactgatccctatacaaatataaataagaccatggcacctttctgcttgaagttctccaatagctttccactgtgctttcagttctcttctgtgtctccatcgtgaccacacaaaccctttgtgatctggccctgcctgcctttcctcctcactcacagcacaccagcgcccccagatcagaaacctcctttctg----------------actcc------acctcacagcctttgcacttactggtcccctgcctagCCACA s canFam2.chr12 3524959 310 + 75515492 ctgcatcctctcttgtcttctgaccatcaattctccacacaacagtcagactgatcctcgtaaaaatgtaaattagaccatggcacctccctgcttaaagttctccaatagcattccactgggctctgaattcccttctaagtctccaacaggggcacttgaaccc--tatgacctggccctgcctgccttgccatctcactcacagcataccagccccaccagatcagaatcctcctctctgttcttgggatacatcaacctctttcgtatctcagggcctttgcagacggtggtcctctgTctagccaca a score=13896 s hg19.chr6_ssto_hap7 2037665 282 + 4928567 CTACTTAAAAAGCACAGG-ctagaatattcttggctcagaactgtacatt----gttccttcttatctccaagtctgatctcaaacaccacttcctcatagaaactttctc-taccacccgctaacctaatatactaactcccctcccacagtttttcacatcaccctgtttatttccttcacagcacctaaacaag--aattatagcctgggaaggtcatttacttgc-ttactagctgtttcctgtgtcataatgtaagctgcataagggcaggaatcttttctgcctc s canFam2.chr12 3525417 285 + 75515492 ctatttgaatagcaatggcctagaatgctattggcccacaactctacattgctggctccttctcatcttccagttt-atctcataaatcacttcctcactgaagctttcttagatcagcc-ccaacctaatatagtatctc----tccactgttttttgcatcactctctatatttccttcacagcacttacacaagataattagaacctatgaaagttatttacttgctttattagttatttcctgtgttaaaatgtaagctccatgagggcaggaatcttttctgcttc a score=1226 s hg19.chr6_ssto_hap7 2037947 25 + 4928567 acctccatatttatagcctcacctc s canFam2.chr12 3525901 25 + 75515492 tcattcatgcttatatcctcacttc a score=11112 s hg19.chr6_ssto_hap7 2037972 293 + 4928567 caaaatggtgtctagcacatagaaggcacttaacagatatttgttgaataaatCCTTCTTTCCTGAACACCTAGCACACTGCCTGGTGCATAACGAGAAACTGATAAAAGTTGAAAagagtc-caaccagtccaatcccttaatctgcagacaagtaaggtcatgtttagaaggttaagaaccttatccatagcttcactgcaagctagcagTTTCCATCATGGTAACCCTTTTCAAActcaaactccaatgtgcatacaaatcacctaggaattcaccttgagattttgttaa s canFam2.chr12 3526048 255 + 75515492 taaaacaatgcctggtacatagtaagcacttaatagctatttgttgaatgagtCCTTATTTCCCAAGCAACCAGCACAAAGTCTGGCACAAAATAAAGAACTGGTATAACTGGAACAGAGCCAAAACCAGCCCAATCCTTTAATTTGCAGAGGAGGAAAGCCATATTT---AGGTTAAGGACCACA---------------CAAGCT---AATTTCTGCTATGTTAAtgctt------ctcaaactccaatgtgtacatgaatccccta------------gagattttgttaa a score=47548 s hg19.chr6_ssto_hap7 2038265 1191 + 4928567 aatgcaggttctgattcagctggtcagggccagggcctgcaattttgtatttctaacaagcttcgcagtgatgctgcagctgctgctgggtagaacacagtttgagttgcaaagctgtatgccatgttca---acctgtcaagtcacccaggaatttaacataataacaaaagatgtttttaccttcattatgctttcagcctgtaccaactcttggcaaaaacaaaatgcataatattgctatcctttgggtaaaggtctcaaagtacagttgattttcattgttcttggtagttctgttctataaagtagccatgaatgctgaattagttaatacctaatttgttcctagaagaaataca-ggctaggttcccgtgagcctctggtcaaaacattttcatcaactgatcaaca-tagagccttgctttatatgtgtttctgtttaaagacaccttatgtaaaatatattgttgattcattaacactgaactcacagctaacagcagtataacttatgcatgaacgaagcttacctaacacatgtatttctcccataaggcacatcatagcccgcttgcactaaaggacactagacagcactacagcactgatgcttgggggccattttaaagagtgaattcaccaataaaaagcacaaaaatgc-aaaaaacacggcagtaaatatactgtgaaaa------------------taacacggcttacggtatgagagctgaaacaaggcagcagagcatctccttga---tcaacctcacct-gggta-------------------ctgtgcgtgtctgcaaaagatcctgaaagtgctgcgactttattggtaaccttttgaggttaccaatacattttagtgaataggcaaattctcagatacgaa--taatgaagaatgaagatcaactatacttcctggcaatatcaagggctgcccatatctcactttgcaggattcaatgtccaagtcCATGTTTTCCTTCTTCATACCCTTTTTTAATTAACcag--ggctgccgctagcccatagcatgcctctgtgcaaatcagaaa----------ttcctctgtgtagatgcag--------acccatgtcagaatgcactgcttgattagaggggcatgggccggatctgagctcggatccactttctcagtcagatgcctttgcacgggcacagcctgcTCCAAACATATGAT-CAGCCTTATTGATCATATCCCTTCTTGGCCt s canFam2.chr12 3526416 1190 + 75515492 aatgcagactctgattaagttagt-ataactggagcttcagattttgta--tctaacaagctccacaatgatgctgatgctgttggaaggcagaccaca--ttgag-GAAAAAGTGCTATGCCACACTCAATGACCTGTCAAACCA-CCAGGAATTTAACATCATAACTAGAGATGCTTTGTACTTCATTATCCTTTCAGCCTATACCAACTCTTGGCAAAAACAAATCTCACGCTATTGCTATCCTTTGGGTAAAAGTCTTAACGTATCgttgattctcattattcatggtggatctgctccataaagtagccacaaataccgcactaacaaacacttattctgttgttagggaaaatatacggttaggttcctatgtgcccctgttcacaaca-tttcgtcaacagatcagtattatgtccttgctttatatgtgtttctgattaaagataccttatgcaacatacatggttaattcattaacaatgaagtcattgccaacagtactgtaacccatgcctgaaagaag-----------catgtaatttctttataaggcatatcacagcctctttgcacttaggaacact---taatgctttagcg-ggatgcttgggggtcattttaaacagcaaaatcaccaac--aaagtacaaaaatgcaaaaaaatgtagcagtcactatacggtgaaaatgacagtgtttacagtactgacactgtttacactacgagaactgcaacacgaaggcagaacatctcgttcaccttcaactgcacatcaggcaactcagatttttcaatgctctgtgcatgtccacaaatgatcacaaaggtgccacaa--gtactg-----tttctggggttaccagtaaattttagtgagtaggcaaattctcaaatacagaatctgtaaacaatgaggaCTGTCCATGCCTCCTCGCAATATCAAGGGCTGCCCATATCTTACTTTGCAGGGTTCAAAGCCCAAGTC-------------------CCCATTTCCAAGTCCCCAAATGGCTGCTGTGAGCTCATG------------GGAaatcagaaaaaggtgccccttcccctaggtggatgcggcaccattcacctatgccggaatgcagagcatggtgaacagagcaccagctagaccttagctctgcttt-ccccctcatccaggggccctt------gcccagtCTGC-CCAAACATACGATCCCATCCTACTGACCATGTCCCTTCTTGGCCT a score=48843 s hg19.chr6_ssto_hap7 2040069 871 + 4928567 GCTTTTCAGCTGTAACGTCTGAGTCTTTTAAATCTCTCCTCATATGGGGGAGTTGGTCCAGAGATGGAGAGCCAGAATAA---GACCAAAGTTAAAGTATGAGAAATAGTGTAGTGGTGTCCTGAGATGGACAGCCTGAGAGGAATGGGGAAGGGGCAGAGAGTGGCCTGGCAGTG-----GCTCTGACCTGAAGCTGATAGGCCAGGTCAGCCTGTGCTCGGCGGGTGTTGACCTCGATGTCATAGGCGGCCTTCTTCAGTTCGTAATCTCTCTGTGCCTTGGCCATCTCGATCTCACTCAGGTACTGAGCAGACACCTTTTCCTGCTTGGCTTTAGCTTCCTGTCCAAGCAGAGATCAGGTAGGAAATGTCAGGGCAGGGGGAGAAAGGCCAC---GGTGACAGCCTGCTTCCCACCAAGGTTCTCTTTCT---GCCTCATGTATTTTCCCTGCTCACCCAGCACCCCTGCTTCTT-CTCAGTTGTGCCACTTCTATCCCCTTTCCCACT--------------------------AAGCAACCCCC--------ATCTCTCTCACCCGGATCCCAGCATCTCTCTTGGCCTCTGCTTCTCCAATCCGTGCATCTTTTTGGACTTGAGCTGTTCGAGCCTTCCCCAAAGAGTGCAAATAGTCCTGTGGGAGAGATGTAGAAATTAG--TCCTTTGGAGGGCTTAAGAGATGGGAGCAAGGAAGTGGGGAAGGATCAA--TTGCCTAGTTTTACCTGGTCATCGTGAATGTCCTTCAGAGTGTAGCTAACCACACTGATGCCCATGTTGACCAGGTCTGAGGAGGCCACTTTGAAAACCTGTTCTGAGAATTTCTGCCTGTCCTTATAGATCTCCTGTGATAACAGGATGGTGGGGAGAAGGGATGTAAGttttttttttttt s canFam2.chr12 3527608 898 + 75515492 GCTTTTCAACCGAAATGCTTAGGTCTTTCAAATCT-TCCTCATATGGAGAAGTTGGGTCAGAAATGTAGAGCCAGAATAAAGGGATTAGAGTTAGAACCTGGGAAAGTGTGGAGGG-----CTAAAATGGAGGGCTTGAGAGGAA--------------ATAACTGCC---CAGTGTGAGAGGTCTGACCTGAAGCTGATAGGCCAGGTCAGCCTGGGCTCGGCGGGTGTTGACCTCGATGTCATATGCAGCCTTCTTTAGCTCATAGTCTCTCTGCGCCTTGGCCATCTCAATCTCACTCAGGTACTGAGCAGACACCTTTTCTTGCTTAGCTTTGGCTTCCTGTCCACACAGAGATCAGGGAGGAA--GTTAGAGTAGGGAGAGGAAGGCCCCAAGGCAGAGAGCCAACTCCTCACCAGGCTCCCCTGCCCATGGCCTCATCTCTTTCCTCTGCCAACCCCGCTCTCTGAGTCCTCACTCAGTCGTGCCCCTTCCATCCCCTCTCCCACTGCATGCCCAAGAAGCCCATGGTGACCAAGTGAGCCCTCAAATGGGATCCAGCTCACCCGGATCCCAGCGTCTCTTTTGGCTTCTGCTTCCCCAATGCGAGCATCTTTTTGGACTTGAGCTGTTCTAGCTTTCCCTAAGGAGTGCAAATAGTCCTGAGGAAGAGAAGCAGCAATCAGAATCCTCAGGAGGGCTTAAGAGATAGGAGCAGGGAACTGGAG-AGGATCAGCCCCACCTAAGTTTACCTGATCATCATGAATGTCCTTCAGGGTGTAGCTAACCACACTGATGCCCATGTTGACCAGGTCTGAGGAGGCCACCTTGAAAACTTGCTCTGAGAACTTCTGCCTGTCCTTATAGATTTCCTAGGGTAACAGAATGGTAGGAAGGAGGAACTGAGGCTCTCAGTCTTCT a score=156354 s hg19.chr6_ssto_hap7 2041197 3709 + 4928567 ATCCACTGTCTCTCACAGACTAGTGTGGGCCTTGGGCCCCCCTCATTTTGACATC-CTTCCAGATGGTTCCCTGCCCCTAGGCCAACCTCCACAGTCATGTGGGCCATGATGGCCCTCTGGTGGCCCTCTAACGTCTCCAGGGCAATGTGGGCAATCTCAGCCTCCGTCTTCCCCAGGAACATCTGACAGGCGGCCGCCAACATCTCCTTGTTCTGCCCCTGGATTTTTACCTGTAGCCAGAGTAGGGGTAGGAAAGGTGTGGTGGGGGTCTCATGAAGTCAGAGAAAAAGCAGAGAGAGAAGGGAGAGCCCTCTAAGAAATGCTTCTTCCATTTCAGGGAAAGAAAGGAGGAGGAGGCAAGTGCCTTGGG-GTGCCTGGAAAAGATGAGAC-TAGCAGAGGAACTTCTCTGCAGGCAAGGGTTGAGAAGACTGTGGCCAGAAGATGTCTTAATGTCTGGG---AGAGAGGGTGATGGGGAAGTGGACTGT-GGGGAAAAGGCTCTGAAAGCTTCACCTGGGCAATGCCAGTGACTGAGATGGGGACCCCATGGCGAGTGTAAACCTTTTCACTCTTGACATTGAGGGTCAGTGTGTTGAGAGAGATCCTAGGGGAAAAAGAAGGGACAGACAGTAAGAAGAGGAGGAAAAAGAGAAAACGGAGGTCCCCCTTCCCTGGTTCCCTTCTTGCCTACCTCTGGATCTGTTGGATGCAGGGCAGGACAAAGACACGCCCTCCAGCCACCATGACTGGGGGGCTTCGGCAGAACCCTGCAAGGTG-TGGGGCAGTGAGGAACGGTGGCAGAGCT-------TGAATGTGGAAGACTGAGGAACTGGCGGGGGTGAGGGGACAGCAACCCACAGGAGAGAATCTGGGAGCTGGAGGGGAAGCAGTCTGGGCCTT-----GGAATGGTGGGAAT--CAAACTGGGCAGTTCGTGGCCATCAAG----------------------GGGCAGAAGTCTGGTGCTGGGAAGTTGGTAGGGAGAGGGAGAAGGGGCAGAGGCCAGACTCACAGGGGTTCTGGGGTCACTGGCTGGGAAGGGAACAACAGTACTTACCGGAGACCACCATGGCCTCATTTGGGCCACAAGTGAAAAACATGGTTCAGGCTGGAGCTGGAGG-AGAGGGAGGGAAAGCCTTTGCGGATGGGGAAGGCGCGCTGTGGCGTCCACAGGGGCCCATCCTTTCCCTTTCCCGTCAGGCCCTCCCAGTCTGCATCCGCCACGGCCC-GTCCCTTCTACACCCATGGGTCCGCTAAGGCTTTTCCCTACAAAATCCTTAAGATCCCCAGCTACCTCTTCTCCGCCTGCGTATGGTCCCTCCCTTCCCC---------TCGCCGCTC---CCTTTGATAAAGGTCCCCCGCGCCCAGAGGCCTGCAGACCTTTCCCCTCTCTCCCTGCTTCTCGGCAGCCCCAGGCTCCATCTCCCCTC-CCCCACTCACCTTCCGGGACGCGGGCGGCAGCCCGGCTGGGGTCTCGGGAAGGGCGGGGTCGCGCAGGGACCTGGGAGCCGGGCAGGGGCCGCTCGCAGACCAGCTTTCCTGGGAGCTGGCCC----CGCTCCCGCGTTCCCCACCCTGCCGCACCCCGTTGCTGCGGCAGACGCGACCCCGCCCCCCGCAACGGACTAAGCACCCCCACTTCGCCCCGCCTCGGCCCAGTGCGCTCGGCCCGCCCCTTTCCCGGCAGGCCCCGCTAGAGTCCGCAGCCCGCCCGCCCGCTGGCTCTCGGGCCCAGCCGGGCTGCCTGGTTAGCCCGGGGAGGGCCACATCCCTGCCGCCCCAG--TCACCGCCCTTCTTGAGCCGGGAATCCCGCCCACGCCGCGCCACGCTCCGCCCCCGGGTGAGGGACTTGACCTCC----GCCTGGCACCCTGGCGTAAGGGTGATTGCCACATCTCGGATTCGCCGCGGGGCAACTACCTGGGAAAACCGCAGACTGGGCAATGAAAGACTACATCCGGCAACCGGATGCTGGGTTCTGTGACTCCAGGAAAAGGGGCTCCTGGGCCCAGGGAGGTGCGCGGGCTGGGGACTCGGCCACGGCGCCTCCCGCCGGTCCTTGCCATCTGAAGGCCGGGAGGAGTGGGGAGTCGGCGCTTGCAAAGATACACTC--AAGACTGCAGACAGTAAATCAATTTTATTTGTGTTCACAGAACATACTAGGCGATCTCGACAGTCGCTCCGTGACAGCCCACCAACCCCCAACCCTCTACCTCGCAGCCACC--CTAAAGGCGACTTCAAGAAGATGGAAGGATCTCACGGATCTCATTCCTAATGGTCCGCCGAAGTCTCACACAGTAGACAGACGGAGTTGAGATGCTGGAGGATGCA-GTCACCTCCTAAACTTACGACCCACCACCAGACTTCATCCCAGCCGGGACGTCCTC--CCCCACCCGAGTCCTCCCCATTTCTTCTCCTACTTTGCCGCAGTTCCAGGTGTCCTGCTTCCACCAGTCCCACAAAGCTCAATAAATACCAAGAGACCTGCATTTACAGCA-GGGGGAACATCTCACACCCTTGCATAAGTTAAAATAAATATTACGTACACATCTCCATCACCTAGGAGGACGTACATAAATACATATAAATATTAATTAGGAGCAATAAGAAATAAATTAACGACGCTCTCCTTCCCACCGGGCCTAGCCCCAGCTGGGCTGTGCCTCGGTCTCTATGCGCCTCGGTCTCTGTGCGCCTCGGTCCCGCCTCAAGCACCGGGTGGCGTCTCCGCTGTAGTGTTCTGAGTTCAAGTTGCCTCGGAAGTCCCAGTTGGGGATACGCTCTCGCGCACCAGGTACGCCTGGTGTTTCTTTGTGGTTTTTCGGATTCTTTTTGGGGAGTGCGGGGAGTCACAGTTAGAAGGCGGCCGGGTGTTGCTGGAGGAAAGTGCTGAGGTCCAGAGCGTAGTCCGAGGGCTCCGAAGTCAGATTAAAGGGCTCGAGGACGGGGGACACAGGGGTGGGCGCCAGGGATGCGGCGTTAGGGGCGTCCTCTGGAGGCAGGGGCGCCGGCACACCCTCTTCAGCCATCAGGATCTGGCAGAAGACGATGGTGAGCAGCAGAAAGAGAAGCCTTTTGGCTGGGTTCGGTTCCTCGACTGGCAGCTGGCGCCGGACCTAAGGGGAGACAAAACAGGAGACAGGTCAGGTCGAGGCCTCTGGAGTCGGGTCGTTCCCCAGTGACTCCAGGGCAGCGCACCCCGCGAATGCCCACTTCGGCGATACTCACCACTCGAGGGTAGAGAACCCTGCGGCTGCGCTTTCGGTGCCCGCGAGAGGCGCTGGGGCGCCCGGCAGGGGCCGCTGCGGGCTCCGGGAGAGGGTCGAAGGTGAAGATCTCAGGACCGGAGCCCCGCCGGGGTCCCGGGATGGTGGAGGGGGCCGGGGTCGGGGCCTGCAGGATGGTCATGGTCGGGTGGCAGCTGCGAGAGTGACACATGGTGAGCCGAGCGGAGTGTAAGGCCAAGTGAGGGTCGGCTGCCGGCAGAG-GTAATTTATGTGCTCCTGAAAATTGGGCGGGTCCTTCTAACTCCTCCTCCCGCAGCTGGGGAGCGGTTGGCAGCAGCGGGCTGGAAATTCCGACGATTAAACAAAGGGAGTGGGTGGAGACTTGACATGCACAATCCTAGGCGCCCAA----CTGCACGTTGTGAGTGTGTGAGTCGTGAGTGGGGGTGGGTGAGATCCCGGGCTGCAGGCACATGTCGAGGCATGTGGCACCTGGAGAGGGGCTCAC s canFam2.chr12 3528506 3348 + 75515492 GGCTACTGTTTCCCACAGACTAGCTGGGTTCTTCAG-------------GGCATCTCTCCCAGATCTTTCCCTGCCCTCAAGCCCACCTCCACAGTCATGTGGGCCATGATAGCCCTCTGGTGGCCCTCCAGAGTCTCCAGTGCAATGTGGGCAATCTCAGCCTCCGTTTTCCCCAGGAACATCTGGCAGGCAGCTGCCAACATCTCCTTGTTCTGCCCCTGGATTTTCACCTGTAACCAGAGCAGGGATAGGGAAAGTGTGGTGAAGGCCTCCTGAAGCCAAGTAGCAAGCAGGAAGAGAAT-----------------------------------------------GGAAGAGTTAAGTGCCTTGGGAGTCCCTGGAGAAGGTGAAACTTAGCAGAGAAATTTCTTTGTGGCCAGAGGTTGGGGAGGCCATGGTCAGAAGAT-TCTTAATGTCTGGGGACAAAGAAGGGGATGAAGGAATGGACTTTGGGGGAAAAGGCTCTGAAAGCCTCACCTGGGCAATGCCAGTGACTGAGATGGGGACCCCATGGCGAGTGTAAACCTTTTCACTCTTGACATTGAGGGTCAGTGTGTTGAGAGAGATCCTACGGGAAAAAGAAGGAGTGGACAGTGAGGAAAACAGGAAAGAGAGAAAACTGGGGTTCCCCTT-CCTGGTTCTTTTC-TACCTACCTCTGGATTTGCTGGATGCAGGGCAGGACAAAGACACGTCCTCCGGCCACCATGACTGGGGGGCTTCGGCAGAAACCTGCAAGGTGAGGGGGTAGCAGACTGCAGTGGCAGGAGTAGGGCTAAGAAAACGGAAGACTGAAAACGTGGGGTGGGGGTTG-------ATCCCAAAAGGGA-AATCTGGGAATCGAAGAGGAGGCAGTCCAGGCCTTGTTAGGTAGCGCTGGGAATCACAAGTGGGGTGGCTTGCAGCCATGGGGAGGTCGCGGGAGGGTGGTGTGTGGACAGAAGGCCTGGACCTGGGAGCTGGTGGGGAGAAGGGTACGGGGCAGAGGCCGGAC-CACAGGGCT--TGGGGGCACTGGCTGGGAAGAG---AGCATTACTTACCAGAGACCACCATGGCCTCATTTGGGCCACAGGTGAAAAACATGGCTCAGGCTGAAGCTGGAGGAAAAGGGAGAGAAAGCCTTTGCGGGCGGG----------------GTCTGGGGGAGAGCAAATTCTC---TTTCCGTCAGTCTAGCCCCATCCGCAGCCGCCAGGGCCCGGTCCCTTCCGAACCCATGGGTCCACTAAGGCATTTCCCGGTGAAGTCCCACCGATCGCCAG--GGCTCTCCCCCGCCGGCTCACGGCCACTTCCTGCTTTCGGGGAGGACGGTTTCTCGATCCTCGGGTAAAGCGCTCCTGCGCCTAGAGGCCC-CAGCCCGTGCGCCGCCCTCCCTGGCCCTCCGCAGCCCGA----TTACCTCTCGGCGCCCCACCCGCCTCCCCGCACGCAGGC----------------------------CGGGG-CGAGCAGCGGCcggggaac--ggcggggaacg-gcggggaacggcCTCC-----AGCCAGCGCGGAAGgcgcccgcg--cccctcccggccccacc------ctgcggcagccgcaggcccgcgccc-----------aggcccgcgcccctcccccggcggccgccc------tccgccccgcccccttcccggcaggccgcgc--------------------------------------------------------------------------------ccgccccggccccgccgccctcccccAGCCGGGA---------------------GCTCCGCCCCGGGACGCGGGACGTGACCTCCGCGGGCCCGGCAGCCGGGCCC---GGAGGTTGCCTCATTTCGGGTTTGCCCCGCGGGACCT-----GGGAggccgcccccggg------------tgcacccggcc-------------------------------------------gcccggggcgcagcgcctgctggggacgcggcccccgcccctcccgctcgccgctggcgccgggaggcggggACTAGTGGGGAGTCGCCGCTTGCAAA-ATACACTCGGAGGACTACGGACAAGAAGTCGACTTTATTGGTGTTCACGGAACATACTGGACGGCCGCG-CAGCCGCCCCCTGGCCGCCCGCCGACCTCCGACACCC-------CAGCCACCCACTGGGGGCAACTTTGAGAAGACCGAAGG---CCAAGGACCTCA-CCCCAGTGGTCCGCCGAAGCCTCACACGGCAGATCCAAGGGGCCGAAACCCCGGAGGACGAACACCAGCCCCTAAGCCCACG------------------TGCCAGC---GGCGTCCTCGACTCCGCCTGGGCGCTCCCCGG---CCCTCCGGGTGCGCTTCAGCCCTGCGCG-CCCGCCTCCACCTCTCCCACGAAGCTCAGCAAATACCGAGAGTTCTGCGCTTACAGCACGGGGGCACATCGCGCTCCCCTGCATAAGTTAAAATAAATATTACAGACACCCCTCCATCACCTAGGGGGACATTCATAAATACATATAAATATTAATTAGGATCAGTGAGAAATAAATTAATGACGCTCTTC--CGCACCGGGCCTGGCCCCGGAGGGCCGGTG-CTCGG---------------------------------CTCGTCTCCGGCGCGGGCTGGCGTCTCTGCTGACGTGCTCTCCGCTCAAGTTGCCTCGCAAGTCCCAGTTTGGGATACGCTCTCGCGCACCAGGTACACCTGGTGTCTATTTG-GGTTTTCCGG-TTCTTTCGGGGGGAGGTGGGGAGCTCGCGTTAGAAGGCGGCCGGGTGTTGCTGTAGGAAAGTGCTAAGGTCCAGAGCGTAGTCCGAGGGCGCAGAGGTCAGGTTGAGGGGCTCGAGGACCGGGGGCGCCGGGGAGGGCGCAGGGGGTGCGCCGCTGGGGACGTCCCCCCGGGCCAGGGGCGCCGGCACACCCTCCTCGGCCAGCAGAATCTGGCAGAAGATGACGGCGAGCAGGAGGAACAGGAGCCTTTTGGCCGGGTTCGGATCCTCGGCCGGGAGCGGGCGCCGGACCT---GGGAGACAAGCAAGGGGACAGGTTGG--CGGGAcccc--gcgtc-ggccgccccc---------------------gcccgc---cgccggctcccgcggTACCCACCACTCGCGGGTAGAGGACCCTACGGCTGCGCTTCCGATgcccgcgggacgcgccggggcgcgcggcAGGGGCCACCGCAGGCTCCGGGAGAGGATCGAAGGTGAAGATCTCGGGACCAGAGCCCCGCCGGGGCCCGGGGCTGGTGGACGAGACGGAGGTCGGAGCCCGCGGGACGGTCATGGTGGGGAGGGAGCTGCGGGAGCGACACATCGCGCGGCGAGCGGAGCGGAAGGCCGGATGCGGACCCGC-GCCGGTGCCGAGCGAATTAAGGGCGCCTCAGACCTGGGCGGGTCCTCCT--CGGCTCCTCCCGCCGCCGGGAG--GGATGGCCAGAGCAAGCTGGAAATTCCGACGGTTAAGCAAAGAGAGGGGGTGGAGACTTGGTCTGTGCACCCCTAGGCGCCCAAGTGTGTGTGTGTTGGGAGTGTGGGGGTTGGGAGT-GGGGTGGGTGAGATCCCGGGCTGCAGGCACATGTCAGGGCATGTGGCAACTAGGCAGGGACCACC a score=7030 s hg19.chr6_ssto_hap7 2045373 178 + 4928567 ATCAGGCCATCCTGCTGCAATACTGACC-------------------CAGTTATATGCACGCATTCATGCACTTGTAGGTATCCTTAGA------------ATATAAACTCCCCAAGAAGGAAATTGTTACAGAAATAGTCAAGATTAAGGGAGAAATGAACACACTAGCACACACAGACACAAACCTGCCTGCCTGAGCACACATGAA s canFam2.chr12 3531916 208 + 75515492 ATCTGGCCACGCTGGGACGATAGTCACCCAGCAAAGTCAAGGAATTACAGTTACACACGCACATTTATACACTTGTAGGTACACACAGAAAacacacacacacacacacacCTCAAGAGGAAAGTAGTTACAGAAATAGCCAAGA-AGACAGAGAAATGAACACATTAGTACACGCAGACACCATGCTGCTGACCTCAGCACACATGTt a score=11227 s hg19.chr6_ssto_hap7 2046142 322 + 4928567 AAAACATACCACGTACACCTACCAACACACATGTACAC--AGTAAAGGTGCAAAGACTGTATAGGGACAGTTCAGCAAA---ACTACTCTCTTAGGAGCGTGCAGAAATATTCACATAAAGGCTGGTGCAGAGGGCCACAAATACAAAGGCAATAGGTTAGCAGCCACCCAGATTTGCCCCTTGCTGTAAG------------------TCAAACAACCAAATT-TATGGGACAAACATTCTAAATTGTGAGACATTATACAAATGTTACAGTAATGGTAATTACTCAACTTAAAGCAGATT-CACATTTCCATAACTTCCTTACAGACAGCTGCTCATGGACACAG s canFam2.chr12 3532734 324 + 75515492 TGCACATAACACATGTGCGTGCGGGCACACACATACACAGAGCAAAGGGGCAGAGACTTCACAGGGGCAACACAACAGAGCTACTACCCACATAGATGTATGCAGAAATGCTCACGTAGGG--------AAGGTGCTACAAA-ACAAAGGCAAGAGGTAAGCAACCACCCAGATTTGTCCCTTGCCATCAGATTTGTCCCTTGTTATTTTTTAACA--CAATTTATATGAAAAGAACATTTTAAACTGTGAGATGTTATTTAAGTGTGGTAGTAGT------------ACTAAGAGAGAATTGCATATTTTCATAACTGCCTTAGAGACAGCTCCTCATGGACACAG a score=1610 s hg19.chr6_ssto_hap7 2046774 292 + 4928567 TTTAACATCTTTTGAGCATTCACCTGTTTCAGGCGCCC----------TCTGTTGAGGGTACTACTG-----TTGAGAGTCCTGAGGCTAGTTTCAGTATAAGTGCTGTGCCATGCAGCTGCCTGAGGAAAGCCAGATAAAGCTGATACTCCAGCCATGAGGGCCTTACCCTCCGGCATGAGGAGGGAACCATGGCCAGGAGAGctctctatctgtctgtctctgttgctctctctctctctctttttttGTTATATTGAGTTTCTGCCTGAAGGAAAGGCAAGCTTTCTTGAAGATCCTAAGAAAg s canFam2.chr12 3533058 200 + 75515492 TTTAACATCCTTT--------ACTGGAGCCAGGCACCCCGTTAAAGGTCCTGTTGAAAGTACTGAGGTTGGTTTGAAAGTACTGAGGTTGGTTTCAGTGTATGGGCTGG----------TGAGTAGGGCAAGCCAGATTCAGCAG---------------GCGGCTCACCGTAT-GCATGCAGAGGGGACCCGGACCCCGG-----------------------------------------------------------------ACCTGGAG--------AACTCTCTGGAAGGCCTTTAAAAAA a score=27757 s hg19.chr6_ssto_hap7 2047380 599 + 4928567 aaaacaaaaaAACCTAAGAAAACTGAAGACTAAGTGTTAA-----Gggggggacccaaaagagctagtgttcacatctgtccaatcaatcaggggaggcttcatggaagagtggcactgaaggtgaccttgaacagtgggtgggatatgacaaattcagatgtggaggatgactgt------aagaatggaattagcaaagaccttgagctggaaaagtacaggatgtgtttggggaatcacaagaaaaacaatctcagagtaagtttcctgtaacggagtagtgggaagtaataatggctggaaaggAGTGGAATTGGGCAGAGTGGGGAGAGCAGAGCTGCCAGGTCAGGAGCCTGGGTTTCACTCTAGACTGTAGAGCTTGTGGGTTGCTGGATGAGATAAAGGGAGGAAAATTCAAGCAGGAAACTGATTGGGATGAGGAGTGATGCTCTGGACGGGTAGAGACTAAGGCAGTAGACAGGAGGCTATTGGAGGGGCTCAGGTAGATGATAACAAGAGCCTGAGAAG-----------------------------GTGGCCCTAAGAGACATTCCTAGCATAAGATAATCAGAATTGGGCAATGAGATGGATATCATTAGGGGAAGGGAGCATGG s canFam2.chr12 3533422 614 + 75515492 TCTCTGGAGGGTCTTAAGACAACTGAACACTAAGTGCAAAAAAGGAGGAGGGACCCAAAACAACGAATGTTCACGTCTGTCTAGTCAATAAGGCGAGGGTTCATGGAAGAGTGGCATTTGAGATGACTTTGAACAGTGGGTGGGATACCACAAAATCAGATGTGGAAGATGACTGTGAGGAAGAGAATGGGATCAGCAAAAGCCCTGCACTGGAAAAGTACAGGATGTGTTTGGGGAATTGCTAGAAAAACAATCTTACAGTAAGTTTCCTGTAAAGGAGTAGTGGGAAGTAATGAT-TCTGGAAAGGA--------GGGCAGAGTGTGGAGAGCTGAGCTGCGAGGCCAGA---------------CTAGATCCTGGATTCCGTGGATCATGAGAGATTATAAAAGGAAGGCAGTTCAAGCTGGGAACTAAATCGGATGACAAGT-ATGCCCTGCATGGGGAGACACTGTAATAGGGGATCAGAGGCTACTGGAAATGTTCAGGTGGATGGTAACAAGGGCTGGAGATGGGCCATGGCAGAGGGAGCCAAGAGGAGGAGTGGCAGGAAGCAACTTTCCTAGCCTAAGACCACAGGGATTTAGTAATGAGATGGGAATCATTAGAATCAGGGAGCATGg a score=99519 s hg19.chr6_ssto_hap7 2047979 2236 + 4928567 GAGAG---GGAGAGT------TGCCGACAGCAAGAGGATGAAAAGATCTGAGATGACTCCAGAGATTTGAAATACATCTGGCTCAGATCTTTCTACC--ATCATTTTAAGCCTGGTGCACAAAGTGAATACATAtatgatctcttccactggaggctgtgtcatacacatctttgtgtcctccagagaacccagcatggtaccttgtaggcagcagttgctcaataatcttgttaaatgCCAGGTG-AAATGTACAACTGTAAGTGTGCATGTAGTATTCCCACCTTGGCTGGGTCACACCAAGCTTCTGAGATGTGGCTACACTCCTCCAAACCACTCATACAAATGTACAACATCTTT-------------------------AGAAAAGCTGGGACAATTCTTACACAGACACCAAACAGGAAACACTTTTCTCCCCTCCCACTTAGGAAACACTTAAAAGGATTTTTCAATCAAGAACATGTAGGAACACAAATAAGAGGACAGG-CCACAACCGG----CTAGAAATACACTACTGCTCTGTGTACAA----TTCCTGGGCCTACAAGTCACTTTATTTTATACTCACTACTCTTATCTAAATACACAAGATCCCTTCCACATTACACACTTCTTCCTGGCTGGCATAAAACACACCTCCTCTGTAAACAAAGGCGCATTGCTTTCCCACGCCTGTCTT-CACACCTGCCATCATTCTTACATTTACACCCAAGCACAGGGAGCCCACCACCCCCAACATCCTTATTCCAAGGCAACTCGCACGCTACACAATGACCAACATAAACCCATG-ACTACTTACACATGTGGACAGACCCT---CACACTCACATAAACATAAATTGGGAGTAGGGGGAGATAGTGATGATGGAAGAAAACTAGTGGGTGGGAGAGAGAGAGAAGCACCAAAGGTTAGGAATGCATTACTTGTTTATGATGGAAAATTTCTCTAGGGCATTAGGCAGAGGAGGGGAAATGAAG-GGGATGCCAGGATCTTGTTTTGCCACTACCTCCCACATCTGGAATCTGGGCCTCCAGCTGGGTCTAGTTATCCTCGCTGTCCTCCCGGCACAGAGAGACCTTTCTTTGTGGCAAGACCAGAATGGGACAAAGAGAAGACCTGAGAACCCGGACTGCTCACCATTCC----CAACCAATCCCATCCCCATTCCTGCTACCCTCAGAGCCCTAGGGCTCTGCTCCTGCTCCTTCCTGCCACACAGGAAGCTAGGGAAATGTTGGGGGTGAATCATTAAGCCAATAA---------GGGGGTGGGGGAGTGCAG-GCTGGGGAATGAGTTAAGGCCAGAAAGTGCCAGGGGCTGAGACGAGCAACTGGACTGGCTCCCACTGCCCTGATACTGGAGAAACAGGCCCTTAGCCTC-CTCCATTTC-CAgctctc----ctcctcatttccttcccatcttcccccagatcacc-atgttccttcatttccctcgtttgacctttg-ccttgatccatcaccactgctagcctccttctcagccccttgtttttcttc--atgacacatatcacgttggggaatcattttatgtatt----tgctttttgctgttgtttgtcccgcctactggaatataatctccacgagtgtacagggccacatctgacctttttctcattagatctctgtagtatctccagtacttgg-ctgtcacctagtaggaacttaataaatattcttaaatCTGTCTCCTCCGAGGAGCTAAACCTCATCTGCAGAGAGGTCTGTTTATCTAGCCATGTTCCTTTAGAGGCCCCC------------ATGTTTGCTCTTCAAAGAGGAGGTTGGGGGCACTCAGGTGTGGCTCAG-GTGATCCGCCGCTGAATCAGGAACAATTGTGCA-GTGACGACAGCGACAGCAAAGCCCTGGCCCGCGCCCTTTACAATCCCTGACATAGGAGTGAGTCAGGCCTGCTGCCTCACCTGGGT-ACTGCTGCACTGCTGACCACAGGCCCAGAACGGGGGACGGCAAGAATGGGCACTGGCGGAGGCAGAATGGGCAGGGGAAAGGGAGGCAGAGATTTGGAAATGGGAGCATCTGAGAAAGGAAAGCAGGGTGAAGGGACTGCACCAGGGTCCTGGGGGTAGGGAATGACAAAGAGAAAGCTTTTTAGCTGCACCTGGTATTCAGTAGATCCTCAATAACTACTTGGTGACTTGAGATGGGTTTGAGATagaaaggaaacacggaatagcaaaaagaacatattgtaatctagtggtgttagacgaaattgggtttaagtgccagctctg s canFam2.chr12 3534285 2194 + 75515492 GAGAGCATGGAGAGTTTGgggtgctgactgtgagagcatgaaggcatcaaggctgactccagggatttGAAATGCATCTGGCTCAGGTCTTTACTCCAGATCGTATTATGTCTGGTGTACACA--GAGTACACATATGATCTCTTCCACCacaggctgtgtcacacatgtgtctgtgccctccataaagcccagcacactgccttacatgcagtagttgctCCACAGTCTTGTTAAACCAAGGCTGAAAATACAGAACTATACACACACATATAGTATTCACCCCCTGGCTGTGTCACCCCAAGCTT-TGAGACATGGATATACTCTTTCAAACCCCACATACAAATTTACAGTATCTTTTTAAAATTTAATTTACAGTATATTAAGAACAGCTGTGACAATTCTTACACACACATCAAAC---------------------------AAGGAACACCTAATGGCATTTCTCAACCAAGGATGTGT-GGGATGCAAACA--GGGACATTCCCACGATTGGGCTTCAATTGATACATTATTGCTGTATATACAATCGCTTCCTGGGCCTCTATGTCGCTTGATTTTACACCTATTACTACTGTCTAAACTCATGTGTTAC-----------CACACTTCTTCCTGACCAGCATAAAACACACCTCC-------ACAGAGACATGTCCCTTCCCTATACGTGCCTTCCACACCTGCCATCATTGTT---TTTACACCCAAG--CAGTGAGCCTGCACCTACTTACACCCTTATTCCAGGGCAAGCTGTACACTACACAATGATTAGCATGAATACATGAACTACTTACATGTACTGATGGCCCACATACAGGCTCACACAGATATAAATCAGGGGT-GAGAGAGATGGTGATGATGGGAGAAGA----TGGCTTGGGGGG--------GCACCCAAGGTCAGGAATGCATAACTTGTTTATGATGGAAAATTTCTCTAGGGCACTTGGCAGGGGAGGGGAAATGAAGTGGGATGTCAGGATCTTATTTCACCACTACCTCCCACATCTGGAATCAGGGCCTCCAGCTGGGCCTAGTTATCTTCACTGTCCTCCTGGCACAGAGAGACCTTTCTTTGTGGCAAGACCAGAATGGGACAGAGA-AGAACCAGAAATCTTAGACTGCTCATCATTCCTTCTCAACCAATGTCATCCCTGTTCCTGCTACCCTCAGAGAGCCAAGGCTCTGCATTACCCTCTCCTTGCCATGCAGGAAGCTAGGGAAAAGTTGAGAGTGAATCATTAAGCCAATGAAAGGTTGTGGGGGGGGGGGGAGGGTAGAGCTGGAGGATGAGTTAAGGCCAGGAAGGACCA-GGGCTGAGACCAGCAGCTGGACCAGTTCTCACTGCCCTAATCCTGGGGAGACAGGCCTTTGGCCCCTTTCCATTTCACTGCTCTCACTGTTCCTCATTTCCTCTCCATCTTCCCCAAGATTGCCAATGCTCCTTCCTTTCCCTCATTTGACCTGTGATCTTGACctcccaccaacg------tccttcttagccccttgttcatgttcttagaactcttgctacaatggggcatcattttatgtatttttatgtatgttgttgttttgtgtccc-cccactggaatataatctccataaataaacaggaccacatccactctttttctcatgatatcttggtagtatctccagtacttggcctttcacctagtaggggattaatGTGTATCCTTAGAAACATCCCCTCTGAGGAGCTACCCCTCAGCCTTGGAAGTGTCTGTTTACCCAGCTGTGTCCTTTCAGAGGCCCCCTCCCGGGTTCAAATGCTTCCTCTTCAAAGATGGGATGCGGGATGCTCAACCATGGCACAGAAGGATCTTCCATTAAATTGAGAATAACTGTGCAGGTGATG-----GATGGCAAAGCACTGGCCCTCAC---------TCCTTGGCAAAGAAGTGAATCATGCCTGATGGCCCACCTAGATAACTGCTACATTGCAGACCA-AAGTCTAGAATGGGGGATGAGGGTAATGGGAAC-----------------------------AAGACAGATATTTGGAAGTGAGAACATTTGAAAAGGGGAAACAG-----AGGTCTGGAGTCAGGGTGCT-----CAAGAAATGGAAACTAAAA----CCTCAGCTATACCCGGCATTTGGTAGATACTCAGTAACT--TTGTTGACTTGAGATGGATTTGTGATagaaaggaggcatggtgtaacaaaaaaagcatgttaggatctggtggtgttagaggaaactggctttaaattccagctctg a score=18809 s hg19.chr6_ssto_hap7 2050215 407 + 4928567 ctact--tattaactaggcaatattgggccagttacttaatgttgctgaaaatctgtttcctcaattgataaatgggcaaattgacctctaggtaactgcaaaggttaagcata-taaatttactccttctgggcacatagtaggtgcttcttgcatggAGCAGGGGCATTATTATAATTATGAGAAGAGGGACTGCTTTGGAACAGGGATGGGCAGCAGTGAGCCAACCCAGGAGTAGGGAACTGGAATGAGAAAGTAACCTCTAACTGCTAACATCACCAGGAGATACAAGT--TCTTTCTCTTTTTACTCTGCCCTCCCTCCCTCTCCATATCAGGCAGGTTTTGTGGCTCTT--TATTTTCCAGAGAAGCAAAGACTTCTGCATTCCTAGTTCCTGTTCAACTAATGTGA s canFam2.chr12 3536676 391 + 75515492 ctgctactattaactacgtgatactgggccagctactt--cgtctctgaaaa--tgtctcctctattgaaaagtgggcatattggctttaaggttattgtgaagattaaGGATACCAAGGGGACTGCTCCTAGGCA--------------CTTCCGTG----AGGGCCATTATTATGATTATACGAAGAGGGGCTCCTTTGGAGATGAAATGGGCAGCAGTGAGCTAACCCAGGAGTAGGTGACCAGGATGACAAA-TAGCCTTCAAGTGCTAAGATCATCAGGAGATAGACTTTCTCTTTCTGTTTTCATCCCTCCTTCCTTCCCTCTCCAACTCAGGCAGGTTTTGTGGCTTTTGCTTTTCTCCAAAGAAGCAGAGACTTCTGCATTCCTAGTTCTTGTTGAGCCAAAGTGA a score=57253 s hg19.chr6_ssto_hap7 2051571 1162 + 4928567 GTGATTTTAAACATCCCCTCC-------CACCTACATTTTAGCTGGAACAATTCT--CCAGAGGCATG-GGGGTAGAGTGGGGTGGTGAGTTCTAGGCAGCAAGTTAACAAATGACCCCTAAAGATATTCATCTAGGCTCTAGGAGGCCCAAAATCAGGCCCTGGCAG-TTCCCCTGACGCAAAACCATGGCAAGAGTTCCGGGAGCACCAAGGCAAGGTCACAAAAGTGGCACGATGACCCTACCCTGGGATGcagctcagcctgacccagcccaactcaacccagcTA-----CCCTGGAGGCTGCTATGAGCTGAGCCGGGAGCTGGGAAAGGGCCCAGCATTCCTGTCCTTCTGCCAAAGCCGGCTTCTTAGGACCCCAGTGTTGTGGCTCCT-CCtttggtcttggtttctttcccaccagattataactccaccagagtaggactttatctatcttgtgtactgctctattttcagtgcctagaactgtgcctgtcaATCAATACAGGCTGC-TGAAAAGGCTAGAAATACAGGATCGTTGATGTCATTACTGTTACAGTGCTGTTCCCGTGGGAAGCAGCCTGCATCTCTCTGTAGACAGCTCCAATGTCAGCCATTGGAGAATTTGATGGAGATTGAAGTCAAAACATAATC------ATAGGGgaaaa--atgcacaacaaataaaatatttccccttttgtccagacttttcagacaccccgtaTTTACTGGATGAGTTGatctacaaagtgaaaggcataaattaaaggctctctaatgt-ttctcctcctctgaaaccccatgattcAGCAGCGTCTCCCATGTGTGCTCAAAAGTTGGAC-GTGCCTCCAGCCTACCCTCCAAAGCAGTTGCCATAGGCTCTTTTCTTCCAAGGTTGGGAGGGACAGTTCATTCCCCAAGAGGCCTCTCCAGGGGCGGAGGCGGGTGCT-GGGGCTGGCCTGTCTGCAGCTCCCTGGCCCTACCCAGTGG---------------GGATCGCGTGTCAGTACTGGGGTTTGGTGGGCTGCCAAGGGGTGAGCCCTGAGGTGGTTTTCTGGGAAGGATAGATGCCATGTGTGACTCAGAACCAAGTTAGGGAAAAAACAAGCTCACTCAATCTCTAGCACCCT-CTGCCTGGCCTGGCTTTGCCCATGAGCTCATAAAAGAGGAAGCTGGGCCGG s canFam2.chr12 3537067 1163 + 75515492 CTGATTTTAAACACCCTTCCCTAGAATGCGCACACATTCTAGCTGGAACAATTCTTGCCAGAGGCATGTAGGGTAGGGTGGGGTGGTGAGTTCTTGGCAGCAAGTTAATGAATAACCATCAAAGACACCCATTAGGACCTTAGGAGGGTCAAGATCAGTCCCTGGCAGTTTCCCCTGATGCAAAAGGAAGGCAAGAGTGCCTGGAGCACCAACGCAAGGTCACAAGAA-AACAGTAT-CCCCTGCCCCAGGATGTAGTTTGGCCCGTCCTAGCTCAGCCCAACTCAACCAGAATTCCCTGGAGGCTGCTGGGAG--AGATGGGAAGCTGGGAAAGGATGCGATGTGCCTG---TTTTGCCAACACAGGCTTCCCAGGG-CCTGGTTTTGTAGCTCCTCCCTTTGGCCTC--TCAgtttcctaccagataataactccatgagagcaggattttatcggtcttgttcactgctctatattcagtgcctaaaactgtgcttATCCATCACTACAGGCTACTTGAAAAGGCTAGAAATGTAGGGCCCTTTAATTCATTAATGTTACAGAGCTGTTCATGTGGGAAGCAGCTTGTATCTCACTGTAGAACGCTCCTACATCAG-CATTAGAGGGTATGATTGTGATTTAACTCAAAGCATAATATGGACGGTAGGGGAGGAGCAAGTGAAACAAATAAAGTATTTCCCCCTTTGTCCTGCCTTTTCAGACACCCTGCATTTACTGGATGAGTTGatctgtaaagtcaagtgcttagattaaaggctctttgatgtctttccctcctctgtaaccccatgattcAGCAATGTCTCCCATGGGTTCTCAAAAGTTAAACTAAGCCTTCCTTCTACTTCCAACAGTA-CTGC--------CTTTTCTTTGAAGGTTGG-------------------AAGAGGCCTCT--GGGGGCGG-GATGAGTGTTCCTGACCAGCCTGTCTCCAGCTGCTGGCCCATCTCCAGCTGCTGGCCTGCCTGGTAGTATCGCGTGTTAGCACT-AGGCTTGACTGGCTGCCAGGGGGTGAGCCCTGGAGTGGTTTTCTGGGAAGGGTAGGTGCC-TGTGTGACTCAGAACCAAGTTAGGGAAAAAACATGCTCACTCGATCTCTGGCACCCTCCTGCCTGGCCTGGCTTTGATCATGAGCTCATGAAAGAGGAAGCTGGACCAG a score=4699 s hg19.chr6_ssto_hap7 2087525 86 + 4928567 ATTAAGAGTTTTTGTATAATACTTCAAAGTTTCTGAAAATTTCCTGAGTTACCAAAAGCTCTTTGTCACAAGAAACCATATTTCTC s canFam2.chr12 3572808 81 + 75515492 ATTAAGAGTTTTTGTG-----CTTCCAAGTTTCCAAAACTGTCTCAGGTTATCAAAAGCTCTTTATCACAAGAAATCAGATTTCCT a score=32352 s hg19.chr6_ssto_hap7 2087950 745 + 4928567 CAAAGTTTCATTTGCTGTCTCT-GCTGTATGATCCCAATCATTTCATTGTTTGTGAGCAGCAAAACT---AAAATCTAGGGAGCCTCATGTCCCTTCTGCTTCTGACTCCTCCCCTACTCGAGCCACAGAGTCAAAGATTCCACTTCCTTCTAGGGTAGTTTTATAGTTGGAAAGTTCTTCTAAATCTCTGACCACAACCTCCTGCTGCAAAATTGTGCAATAAATCCCCATGAGTGTTCAGTGTAACCATTGACTATAGGACCTGGTTTGATGTGGGAGGCATTTGGGGCTTGCGGAAAGCTTTATGTGCTCTGCCCCGTACAAAGGGCAGCCTTGGGGCAGCC-GATGCCCTTGCTCTGGCCCTGACATGCTGCTCCCTTTTTGAAGTGTGATTTCTGATTCTGGGTGCAGCTTGCCATATCAGAGGAGAATGAAGCTAGGTGGCATGAACCCCA-----GAAAATTTTGATGAACTCACCTCTT--GGAATGAGGACAAAGGAGAGTCTTGAAGTAGAAAAGAGCTGTGCTCCTTGAAGGGGTCCAAAGTTAAAGCTCACACTGG--GGTGGATTGGGTAGACTTACCTGTCC-CCTCTTTGACAGTGTTGCATTTGAGCTTCTCCTATTGGGTCCTTTGGAAAAGAATTCTTTGAACTACTAGAAAA-TTAGGAC-AGGGTGGGGGCAAAAGAAAATGTAt-attgagagcttgctccatgtatttgttaggcatttaatctaggtatctaattttatc s canFam2.chr12 3572889 742 + 75515492 CAAAATTTTGTTTGATGCCCCTCTCTGTGTCATTCCGATAATTCCAATGTTTGTGAACAGCCACACTTCTCAAAAATAGTGAGCCTCATGTTCCTTCCACCTCC--CTTCCTCTCTCCACCCTTCCCAGCCACAAAGACTCCAAT-CCTTCTATAGTGGTTTTATAGTTAGAAAGCTCTTCTAGATGTCTGACCACAGCCTCCTGATGCACATTTTT---------TACTATGAGAGTTAGGTGTAACCACTTATTATGGGACTTGGTTTGGTGTGGGAAGCATTTTGGCTGTGCAGAAAGCTTTATGTGCTCTGCACTGTGTAAAGTACAGTTTTGGTGAAGCTTGCCGCCCTTGCTCTGGTCCTGACGTGGTGCTCCCTTCATGGACCATGGTTTCTCATTAGGAGTATAGCCTGCCATCTCGGAGGAGAATGAAGGCGAGTGGCATAAATCCCATTCTAAAATATTTTGATGGACTCATTTCTTTTAGGATGAGGACAAGGGAGAGCCTGAAAGAGTAAAAG--CTTTGCTCCTCAAAGCT-TCCCCAGTTAAAACCAAGACTGGTGAGAGAGTTGGGCTGAATTACCAGCCCTCCACCCTGACAGTGTTGAGTTTGGGCTCCCCCTGTTGGACCCTTTGGAAAATAATCATGTGAACTACAGGAAAAATTAAGACCAGGGTGGGTGCAAAACAAAGAACAttatggagagcttgct------atatattaggcattttatttaggcatctcatttcatt a score=20592 s hg19.chr6_ssto_hap7 2088696 455 + 4928567 tcaaagtaatcctgtgggttggttttatcaatcctattttgcagagttggatgctgaaacttgc---agtcacacaaggacttgaacctagagcttt-----tctaaagcccgtactctttccagtacCCTGAGCCAGGGGAGCCAGCGGGCAGAAATGACGTGTGAGGTACCCTCTTTCCCTTCACTTCCATGTGATCTGTTACTCATTTTGTCAAGACATCCT-GGGTCCCAGGTAAGCTCCAGTGATTCCCCTGAACcagtggtgtgctggagccagctcagacctgctagtgagagtgttaaatattcaggaaatt--tgcaagctgtttgttaaactgtcagtggttggaaattggtcatgg---gaggaagtatctacaccacggaataactacacacggataactactacaaatcagggatccccatctcc------------cccacaagctggtttgctaacacatcactgT s canFam2.chr12 3574196 464 + 75515492 ttaaagtaatcccacaggtaggttttatcaatcctcttttgcagagttggaagctaaagcttgcccaagttacacaaggatttgaacccagagctttggctccctaaagtccatactctttccagtacTCTGAGCCAAGAAAGCCAGCAGGTGAAAATGGCACATGAGGGGTCATTCCTTCCTTCACTTCCACTGAATCTATTGCTCATTTTGTTGAGACATTTTAGGGACCCAAGAATGTTCTGGAGCTCCCCTAGAACAagtgatgtgcttcagccacctcagaccaactggtgagaga---aattatt----aaattgttacaagctggtcgttaaaccattgttagttggaaagtggtcatggtgggtgggggtatttacatcatggaa---------attggtaacctttgcaaatcagggatttt-ACCTCCTGGTAGTGAAACCACTCATGCTGGTTTATCAGCACAGCATTGT a score=17969 s hg19.chr6_ssto_hap7 2089449 481 + 4928567 AGAGCACTAACATTGGGGTCCA------------GAGTGAGAGCTGAAGAGAACAGGGCCTGCCCCCAGCAGTCACAGAGTTTCAGCTGCAGACTGAGGGAAGACCGA------TAGTATCT------ATGGGAAAGTGTGTGCACAAAAGAGACAGAAAAGAGGCTGGAGAATATTGATTATTCACACATGAACAAAGTAAGTACCAATGTTATTAATCCCAGGGATTTTGCTGGGAGGAGTTCTGGCTTGTTATT-AGGGTCCTTTTCTTTCAGATCAA------GAAAAGGGAGATCTAATTCATGAAGAAACTAGAAAAGTGCCCTGGATTGGTGGGAGTGTGGTGGGGGTGGTGCTGCACAACACAGAAGAGGGGAACTTTGA-------------------CTTTGAGCCT-GAGGTCTTGGGATGAAAAGCAGTTTGTGGACTGGATTCCTGACCCTGGGGTTACAGTAGGAATCCCTTTGCCTGACAGGTGGTGACCTTCCTCTGGCAAGGTCCCCAGACTCCT s canFam2.chr12 3574696 516 + 75515492 AGAGTATTAACTTTTGAGTTAATTAATGAGCCTTGAGTAAGAGCTGAGGATGATGGGACCTGCCCT-----GTCACAAACCTTCAATTGCAGGCTGAGGAAAGATAGACATACATATTAGTTGGAAAAATGAGAAAGTATGTACATGTGGGAGAGAGAAAAGA------AGGCTATCGGTAATTCACATGTAAACAAAATA----TCAACATTTTTAATAATGGGGATTTGGGAGGGAAGGGTTGTGACTCATCATTCAGAGTTTTTTTCTTTCAGAGCAATGGGAGAGAGAGAGAGATCCAAT-CTTGTGGGAACTAGATAAGTGCCCTGGAACGGGGCGGGGGGGGGGGGGAGGGCTGTGCACAACACAGAAGAGGGGAGATCTTATTTGTGAAATGAAAGGTAGCTTTGAGCCTTGAGGTCTTGAGGTGAGAAGCGGTGGGTAGACCACATTCCTGACTCTGAGAACACAGATGGGATCCTTTTACCTTCTAGGTGGTGACTTTCTTCCATCAAGGCCTCCAGATTACC a score=5554 s hg19.chr6_ssto_hap7 2090069 115 + 4928567 CAGAACAACTCTAAGCCCCAGGGCAA-AAATCTGCAGAGCTGAGTCTCATGCCACTTTGGGGCA--CTCCATCTGAGGCCTGGAATCAGAGGCCTTCCGCAGCTTGTGTAGATGCTGC s canFam2.chr12 3575212 116 + 75515492 CAAAGCAACTCTAAGCATCAGGAGAACAAATCTCCAGAGCCAA--CTTGGGGTGCTTTGGGGTCATCTCCATTTGAGGACTGGAGTCAGGGGCCTTCCTCAGCTGGTCTAGATGCTGC a score=8077 s hg19.chr6_ssto_hap7 2090489 223 + 4928567 AAAGAAACAGCAGCCTCCTGTAACAAAATAAGTGGTACATCTTTTGTGATG---------GGAGCATCTCCCTGGGGAGCGAAGCTGGACGTTGCAGCCCTACCCTGTCCCCAGAGGTTTTTCTGTCCCTTTATGTCTATGAACAAGTATAGCTGAGGCCATCAGCACTGCACACACCTGGAACAGTCTTGTTAAAACAGGACCTCCCTAAAGGCCAAGAGCTAAGGAAAGA s canFam2.chr12 3575328 220 + 75515492 AAAGAAACAGCCATGTCCCATAATAAAGTAAGAGGAACATCCTAGGGGATGCAGTTGGAGGGAGCATCCCTATGGGGAG---AAGGGGACTTCCCAGCTCTGCCATG-CCCCAGAAGTTTCCCTGTCCCTTTATGGTTGCGGGCAACCACAGTTGAAGCCATCAGCAATGCAGAATCTC--AATAATC------AAATAATAATTCCCTAAAGATCTAGAGTTAAGAAAAGG a score=37485 s hg19.chr6_ssto_hap7 2090712 864 + 4928567 GAAAGTGAAGGACTGAGCAGCAGGTAACCAG--AATCGGAGTCATTGAA--------------------------GGCAACTGCAGGAGTTGCCCCTTC---------------CTGGCTCCCTCCCATGGCAACTCCCTGAGTCTGAGTAGAGAAGGTTAGAGACGTATGGAGGTTCCCACCCCT-CCTGTGAAAGGCTCCC-TTCTGAGTTCCAGGTCCCTATCTGATGACCCACCTCACCTATGCCTGCCTAATACCTGAATGGCCATCTCTTTCAGAGACCACTCTTATTCCCAGGTGTGTGACCTCCTCCTACAGAGTACAGTGGGAAAGACACCATCTCCAGGTAACCCCAACACAGTGAGGGGTGGAGCGGGGATGTGGTCATTCGTTCCAGGTATTGTTGATTCTCTTGAGGTTCAATCCAGGGCTAGAGATTGTGATTAAAGAGATACCCAGATTGGGTATGCGTGCAAAGGGCAAGAGCTATGAGACCAATGTGACATTTAGGATTAATTAGTCCCTTCCACAGGGCAGGCTGCCACTCACTGGTACAGCTCCTGGGCTGAGCCTGGCAGAGCTCATTAGCAAGGCAGACACTGGAATGTGTGTGCAAT-GGAGGGAGGCTTAAACTCAGAGGCTGCTGGTTCCTATTAAGCAGAGAGAGGTTAGAACTTAGTGGCACAGAAACTGATATCAGCTAAATATGGGTTAGTCACCAACCCTGCACCATCTTCCCTAACCTTTGAGAAAGTCTTTTCCTACTGCTTGTTCACatccattcattcaacaaacaattatgaattttctcttaggtgccaggtgctacacaagatactggctatagcagcgaacaggacagcccgtctcatcctcatggaggtcacaggacaatgagaagaaagac s canFam2.chr12 3575747 833 + 75515492 GAAATCAAAGAATTGAGTAGCAGGCAACCAGTTAATCTGATTCACAGGACAGAGCTGATTTATCTTCAGCCCACAGGGAATTGCACGA-TTGCTCCTCCTTCACTCCTAGCCTGCTGCCTCCAACTCAAAGAAGCTCCCCGAGTCTAAGGGGAGAAAG--ATAGACCCCTGCACATTCCCACTTATGTCTGTTCAAAGCTCCCATTCTGAGTTCCAGGTCCCTGCCTGAGGACCCACCTGACCTATGCCTACCTGATGCCAGAATGTGGACCTCT--AAGAGATC-----CACTGACAGGCAAGTGACCTTAGCCTACAGGGCACAGCAGGAAAGCCA--GTCTCCAGGTAATCCCCCTACAGTGAGGGGTAGAATGGAGGTATTGTCCTTT-TTCCAGGTGTTGT-GACTCTCTTGAGGTTCAACCTAAGGCTAGAGATTGCGACCAAAGAGACACC-AGATTGGACA-----------GGTCAGAGCTATGACACTGATGTGGCTTTTAGGATTAATTAGCCTTTTTGGCAGGGCAGGTTTCCACCCACTGGTATAGCTCCCAGGCTAAGC-----------------------AGACAACAGAATGTGTTTGCAACAGGAGGGAGGCTTGAACTCAGAGGCTATTGGTTTCTGTTAGGCAGAGA----TTAACATCCTGTGGCAT---------CATCAGCTAACTACTGGCTGGT----------ACAACACCTTCTCTAACCTTTGAGAGAGCCTGCTCCCACTGCTTATTCACatccattcattcaacaaa----tataaaatttctcttaggtgccaggtgttacacaagatactggatatagcagtgaacaggatagcc-atcttgcccccatggaggtcacaggacaatgggatgaaagac a score=722 s hg19.chr6_ssto_hap7 2091895 75 + 4928567 attgaacaagtaattacagggtattgggtgttatgaaagaaaagcatggtactgtataatgaggtcatctaattt s canFam2.chr12 3576580 40 + 75515492 actgaacaaataattaaaGGGTG-----------------------------------ATGAGTTCTTTTTTTTt a score=4745 s hg19.chr6_ssto_hap7 2092364 102 + 4928567 gctgtgagaaagtgaatgagttgcctccctttcctgtgcctctgtttcttgtaaattctatttccaagcatcatgaggataaaagacaatgtatatacattg s canFam2.chr12 3577185 96 + 75515492 ACTATGAGAATCTGAGCAAATTACAT----TTCCTGTGCC-ATGTTTCT-GTAGATTCTATCTCCCAGCATTGTAAGGATAAAAGACAATGTATATAAACTG a score=14263 s hg19.chr6_ssto_hap7 2092818 304 + 4928567 CCACTATTGTTATTTATGTACACCAAATTTATATCCAAAGGGACTTTGATAGTTACAAGAAAAGACATA-------TAAGTCCAGATATCATTGAACAAGAGTAAAATAATAAATCAAGTAGGAATGGAGGGGAGGATATGCATGCAGCACTAGATAATATCTATATATAGAGAGGATGAGGTCTTGGAAGATGAGTCTGAAGACTTTCCTGTTGGAGAGGGGC-TCTATGCTCGGCATGCTGACTGCTTTT--ACAACCCCACCCCCACATCTCATCTTAACCACAAGACAGTCTTGTTCTGGGGAGTTCAGA s canFam2.chr12 3577427 294 + 75515492 TTACTCTTATTATTCATGTACATCAAGCTTATATCCAAAAGGACTTCGGTAGTTAAAAGAAAAGACATAAACACCATAAATCTGGATTTGATAGA-TGAGAGTAGACTAATAAATGAAGTAGAAAGGGAGGAGAGGGTGTGTACACAGT----GATAATATCTATGTAGAGAGAGGATGAGCCTTTGGAAGGTGAATCAGAAGCCTTTCCTTTTGGGGAGGGGCCTATATACTTGGCGTGCTGGCAGCTTTTTACCAACCT---------------TCTTTCCCTCTAGACAATCTTATTCTAGGGAGGTCAGA a score=23870 s hg19.chr6_ssto_hap7 2093745 488 + 4928567 ATCTTTCAACCCCCAAAATCCATTGGTGTGGGGTT--AGATGAGGGATCCTAAAAGGAGAGGGAGGCTGCTGTGCAGTGATCCCACCGGCCTGCTTGCAGGAAGGAGAGCCGACCCTTTcttgacctctaccaaagacactagagagctttgtaaatcttccaattagatgatacataaatacttccccaggtctt-ctaggcctgattcaataatatttacttcgagaggctgctgcttcctgtttgtattctcttaccacaagttatctgctgttcctactttcacttaagctttgtatcgtactctgtgagaaatgtttgagctggctggacacatttcctgaaatcatttctctagtcttttacgaaatgtctgcatttatgctggaatcatagagctgaactatcattgagataaaaattccagtctttaccccaatttacaattcctaaaaactgtcactttcttagatctcttcacattttcat s canFam2.chr12 3577721 484 + 75515492 AATTTTTAACCTTCAAAAGTGGTTTGTAGCAAGTTCTGGATGAGGGCTACTAAAATTAAAGGGGGATTGATGTGCCATCA-CCCAGTGCCATGTTTGCAGAAAGGACAGCAGATCCTTT--TGACCTTTACAAGAGGCACCAGA-ATCTTTGCATATCTCTAAATTATATGATACATAAATACTTATCCAGATTTTTCCAGACCTTTCTTAATTACATTTCTGTTGAGAGGTTGCTGTTTCCTGTTTATACTCTCTTACTAGGAATTAACTGCTGTTCCTACTTTCACTTAAGTTTTGTATCTTGCTCTGTAAGAAACTTTTGAGCTGCCTGAAAATATTTCCTGAAAT---TTCTCAAGTCTCTTTTCAAATATCTGGATTTATTGAGGACTAATAAAGCTGAACTGCCACCAAGATCAAAATGCCTGTCTTTACTTCAATATACAATTCCTAAAAACCATTATTTTCTTGGAACTCTTCACATTTTTAT a score=19420 s hg19.chr6_ssto_hap7 2094549 529 + 4928567 gcttctattacctgtgtaagcaagtggctttattgggaggcgattttcacaaagaaacaaggttttttaaaaaaggtgtttccc----gtaggtttctgcctgtgagaccacctgctgagaaatgcagagccgctttgggaagctgggtagtcagctctcatccatactcactcaaccatgcccagctgggcagtgccacttgtgtctgagcctcagcaaaactgcatgtccctaaatgtcaggggtcttcACAGACAAGTGAAGCAACCAGAAATACTGAATTTTCAGATGGACATGTTTATC-GTACTGAATCTCCATAGCCAGGAGGCACAGACAACTAATAAAGCCCTGTGCCCCATTATTGCTTCATTGATTCACTGAAATAATGCTGGGTATGATT----GTGGCTACAGAGTTAAGCCCCATTGTTAATTATATGGTTTGGTGAGGGAAAGAGTTTTTTTTGT-TTTTGTTTTGGCTAGACTAATGTAAACACAGTTCAAATGTTGCTCCTTCACTGGGGACAGAAAAATCC s canFam2.chr12 3578205 469 + 75515492 ACTTCAATTACCAGTGTCAATGACTGGCTTTCTTTCTGGGCAATTTTTACAAAGAAATAAAGTT----AAAAACATTTTTTCCCTTCCATAGATCTCTGGCTACTGGACTATCTGCTGAGAAACACAAAACTGCTTCCTGAAGCTGAGTGGTCAGCTCTC-------CTCACCCAACCAGACCCAACTGGGCAGCACCATTCTTG-CTATGCCTCAGTA------------------------GGGTCTTCACAGACAATTGAAGCAACCC-AAATGTAAAATTTATAGATG-------TCATCTGTACTGAGTATCCATATCAAGAAGACACAAACAG-TAATGAAGCCGTGTACCCCATCACCGGTTCATTGTTCCACTGCAGTAATTCTTGATATGATTAGTTGTAGCTACAGAGTTAAGCCCCATGGTTGATTAT-------------------------TTTTGTGTTTTGGGGGGGCTAAAGTAATGGACATATAGTTCAAATGTTGTTCTTTTCCTGGGGTCAGACAGATCT a score=36400 s hg19.chr6_ssto_hap7 2095342 793 + 4928567 CACGTAATATAGTTCACATCTTTGCTTCCCATGTAAATTCCTCTTTTTTGTGTGTCACTATCAGTATGTAATTATTGAAACTTCAAGGTATGACTCTTGTTAGGAAATGATAGAGAAAAAACAATTGCTCTATAATCACCCCTTACATTGTGACTTCTTGCAAATAAATACACCCCACTTTCAGCCTCACTCATTTATTATAAAATTGTAAGAGGTGGAACAAGCCTTTGTTTAGAGATGTGATTCATGTGTTGCTTGCTGGAGTTTCTGAaaacaaacaaacaaacaaaaaaacCCAAGATAGCAGATGGCCAGATGAGCCACTGGGAATGGAGCAATGGCTGGTCATGGCTTCTGTCAAACACAAAGCTCTGACTGGAGAAGCTTGGAATCTTCTGGATGTCTTTTGCAAAGATGACAAATTCTTTTAGATAGGCTGCTGCTTGAAGGTAAGATGGAAGAAGCTTTGTTCATTGTATTATGGAGGTCTTTGACCCCCACCTCCTCCCACCCCATGAACTCAGACCTTCCACATTAGACCTGGGCTGTCCCTCAGCATCTTTGCTGCACATTGCATGAAACTTTTCAGTTATTACATATAACTTCCAGGTGTTTGAAATACGAAATGCGTAAGAGACATGTTCCTGAGATGTCGGAGTGAGGTTTCCTTTGAGAGAAGGAAGTGAGGGTTGTTGCCTACAgattgttgagggtaat-aatgggatgaggcataaaaaggacctagcctagcagcaggcatgtagtaagagctcagtaagtattacat-----------ttgttt s canFam2.chr12 3578674 756 + 75515492 CACATGACATAGTTTGCTTCTTTGCCTCATGTGTCAATTCCTCCTCCTTTTCTGTCATTATCATTAGGCCATTATTGAATTTCCGAGGCATGACTCTTGTTAGGAAATGATGGAAAAAATACAGTTGCTCTATAATCACCAATTACATTGTGACTTCTTACAAGTAAATGCACTCAACTTTCACCATTACTCATTCATTATAAAATTGTAAGAGGTCCAACATGCCTTTGTTTAGAGATGTGG-TCATGCTTTGCTTGCTCTACTTCCTGG----------------ACAAGGATCCAAAATCATA-ATGGCCAGATGAGACACTGTGAA-GGAATAATGGCCGGTCATGGGTCATATCACACACATAGCCCTGAGTAGAGAAGCATGGCATCTTCTAGGCATCTTTTGTAAAGATGACAGGTTTCTTTAGATGGGTCTCTGCTCAAACGTTAGGTGGAAGATGTTTTGTTGACTGTGTTATGGAGGTCTTTGGCCC-------------TCCAATGACTATAGACCTCCCAC---AGGTCTAG-----------GCATATCTGCTATAAATAATATGAAAA-CTTCAGATATTATGTATAACTGCTAGGTATTTAAAATAGGAAATAGGTAAGAGATGCATTCTTGAGAAGAGGGAGAGAAGTTGCCTTTGAGAAAAG--ATTGAGGGCATTACTTAATAggttgctgagagtatcaaatgggatgatgcatgaaaaggacctagcccattacctggcaggtaataggagctcaataaatgtgaaattattattAATATTGTTT a score=14998 s hg19.chr6_ssto_hap7 2096135 607 + 4928567 aattagtgTCTGCCTACCAGGTTCAA--CCCTTGGCTTCATATGTCCAGCAACACTTCCTAACTTGCCCA-TTCTTGCCCTTCCTTGGGTCCTGCTGTTT---ATTCTGTTCTCTGAAATAAGGAGTTCCTCCCAGTATTGTAGCTGATAAGGTTAGAGCTCAAAGCAGTTAGGGACCTCAAGAGGTATCCTAGTCTGGTTCCTGGTCTAGATAAAAtattatcccttattgcagaagtagcaactgaatctaggaaaggttgagtgatttgAGAGACTATAGTAGGCATAGGTGGGGATATTGGCTAATTCTTAGTTCTTCTGACTTAGGAGCATCTAGGTCGTGGACACAGAGTGTC-CCTTTTTTCAAAGTGGAGTCCCACAGTGCATCACTTACAGTTATTCTA---------GCTGCTGGT---GGTATTTGGAGGAGTATCCTAAACACTTCTCTTTCCAAATCACAGGCCCAGTTGGGATCAGGAACATCAACTCATATCACATGAGCAGAACTTGTTCATTTGGGGACATCCCCAATAATGCCAAAATCTATGCTCCAGATGAGTAAGAGTATGAACTGGAACCACTTTCAGGGAACCTCTTGTCTGCACCTCATTCT s canFam2.chr12 3579616 508 + 75515492 TATTGTTTTCTGCCTAGCAGCTTCAGCTCCCTTGGCTTCATGTG-CTGGCAACACTTCCTGACTTGTTCATTTCTTGCCCTTCCTTGGGTTCTTTTATCTTAAATTCTTCTCTATCATGAAATAATCATATCTCAGATCTATGGTTGA-------AGAGCTAAGAGCAGTGAG-----------------------------------TAGAT---------------------------------------------------------------------GTAGAAATAGATGGGAATAATGGCTAATTCCCAGGT-TTCTGACTTAAGAATATTCAGGCCCTAGGGGCAGGTTTTTACCTTTTTTTGAGATGGAATCCTATATTCCATAGTTTATAGTTATTCCAGTCCGTGGGGTTGCTGGTAGAGGTA-TTGATGGAGTATGCCAACTACCTCCCTTTCTAAAT--TAGGCTCATATGTGATCAGGGATAACAGCTC-CCTCACACAATCAGACCTTGTTCATCT-GGGACATCCTGAATGATGCCATAACTTGTGGTCCAGATGGGCAAGAAACTGAATGAGAGCCACCTCAAGAAAACCTCCTGCTGGATCCTCATGCT a score=7128 s hg19.chr6_ssto_hap7 2097073 229 + 4928567 GGTGGCTGAATCCTCCACTCTCCTGGTTCTCTCCTCTATGCTGGTAGGAGGGGAGGCTGGG-------AGAGAATGGGAGAGGTGGTCATGAT-------------------CAGTAAAGAGACAATTGGAGGGAGATGGTCCAACCCTGTGGTTCTGGACTCTGAAGTGGTCTTTACTGAAAACAGCAG--ATTCCTAGGCTCAGAACAGTGGCAAAATAGCTTGGAA---TTTAGGGGTCTCTGA--------------TTTTTTTCAGATt s canFam2.chr12 3580124 251 + 75515492 GAAAGTTGAATGTT--------------------TTTATG-TGGGAGGAAGGGAGAATGGGGGGTGAAAGGGAATGAGAGAGGTGGTCTTGCTATTTAGACTCTTCCTCTGATAGTACAGAGCCATTTAGAAGGAGCTGTTCCAACTC--TAGTTCTGGGCTCTCAAGTGGTCTTTGCTTACAACAGCAGCAATGCCTAGGCTCAGACCAGTGGGAAAACAGCCTAGAACTCCTTAGAGGCTCCTTAGAGCCTCAAAGTTTTTTCTTCCAGACT a score=1258 s hg19.chr6_ssto_hap7 2097571 35 + 4928567 TTTCGTAATAAGTTTA----CTTTAAATCAAGATCGAAg s canFam2.chr12 3580391 39 + 75515492 ttttaaaatgagtttatgtttcttgaatcagaattgaaa a score=30666 s hg19.chr6_ssto_hap7 2097861 1041 + 4928567 TGATTATtgttttt-tatatctcctttaatgtacaggttagctctctcatttt-ttccccctcttgaaataggtttgttggagaaaatggattttttttgtactgtacagctttccagtctgggttttgctgattctaccctggaggtgctatgtaagacactcctctgatcgctgacttcttgtgaattgctaatttcatctagaggtctgatcagattgaagttcagtgtttgt----ttttgcagggccccttctcagggaatgttgtgaacattcacccagaggtacatgctgtctgcttgtgtccgtctcttttggtgatgttctaagtcattcgtgatcatcgactaatccattatttcattaggagttgcaaaatagtaatattggaattctattatttctttcttcatttatGTATTTATTCTTTTTTCTCCCCCACACCCACTCTCCTGCCCTGCTCGCTCCtttcttcagttattaggtagactgcttgtgtaagagaaattgcttcatcaaccatggggttcagttatggtttctataggaaaggcagaataaagg-atttctctttattaccagttttcaagttgttgagttggttacgtagagtcctccacaagcgaccaattatttaagataccattatgaaatcatggattgaaacatatttgatgtacttcagttcactatagtccattatagtgattagtcttatgaatgctcaaattgtcccgtctttggcaagtgggagtcttttcacctctttctgacacagtccaaagagactttgatagctttttgagtttctgatt-tgaccagatatcgaagcacatcttgtacatttccgttcccagtctgagagccaagcatttctttaagaagatctg--atttcagttgaagggaaatgatagactgccagagatgcttgttgctgctggattggttcttgtttctagggccttttagtgggaagaaaatataaacatat---tttAAAAATAAACTCATTGTCTGTTTATACTAATACTTTCtttatttttttaa s canFam2.chr12 3580446 881 + 75515492 tggttggtatttttatgttttttttttaatgtataagttctcttaccgattccattttcccccttgaaatatatttgttgaagaaactgtgttgttgttgtttc------tttctttgtttgttttgttttgtttttgtcctgtag-----------------------------------------------aatttccctcag--------------------tctatgtttggcttatcttataggactc---ctcggagaa---tgtgaacttccaacagaaggtgcataatgtcagcttgt----ctctcttttggttatg---------------aggcattgactaatgcatgattttcttaggggatgcaaaatggtgatattggaattctatcattctgttcttcat----------------------------------------------------------------ttactagctggactacttctgtaagagaaatttcctcatcaaccatgtag-tcaggtatggttcctgtaggaaaggcaggaaattttcatttctttttatgaccagttttcaaattagtgagttggctacctacaactctctaaatgtgagcaacta---aaaaaatcattatgaagtcataggtttgaatatatttgatatagctcagtttattacagctcattgcaattattattcttatgaatgcttgaattgtcccatctttggcaagtgggagtctcctcacctccctttgatatattcctaagatactttgatagcttcctgagttttttgttatgacgagacatccaagtacatcttgtacatttccttctccagtctcagaaccaagcatttctttccattgatgggaaattgcaattagagatcacagtcagggtaatagggatattcattgctttaggttgatcttttttttatagggccttctggtggataggAAATACACACATACATGTTTTCACTTAAAGTCATTCTTTGTTTCTACTAACACTTTAAAAA-------Aa a score=3328 s hg19.chr6_ssto_hap7 2098902 130 + 4928567 atttttttttaCCAGCTCTAGGATCAAGGAAAAAGATACTTTCCATTCAAATAGAGGCTCTCAGTGTTTTTATATAACTTCACATACTTGCATCTGTTTTTTTCTCCCGACCAAATATTCTAGTTTCCAA s canFam2.chr12 3581500 104 + 75515492 GATTCTCTCTACTAAC---------------------ACTTTTAATTCAAATAGACACTCCCACTA-TTTTACATGACTTCAT---CTTACATAAG-CTCTTCCTCCCAACCAAATATCTCAGTTCCCAA a score=1855 s hg19.chr6_ssto_hap7 2099032 78 + 4928567 ATCGACCAACGTTTGCTTTATCCCTCAATACTTATACA-CAGTCTTAAAATAACAACATCAATATTATCGCCATTAATA s canFam2.chr4 18411858 74 + 91483860 AAAAACTAA--TTTGCCTTGTTGCACAATATATATACAACAGTTTGGGAATAATAATAACAAGACTATG---ATTAATG a score=4919 s hg19.chr6_ssto_hap7 2099572 175 + 4928567 TTTTTTTTTGTCCTTAGGGTATATCTCACTAGGAATATACAATCAAATTGCAGTGGTCTAAAGTTGTTTGAGACAGTTTTTCTCTCTGTAATTGTATCACTAA-----------CTCACTGTGCGGATAGTCTTTTATTTTTGCTTTTGATTTTTAGAAA------TTTAAATATAT-----ACAtgtatatattct s canFam2.chr4 18411955 195 + 91483860 TGTTCTTCTGTCCTCAGGGTAAAATCCACCAGGCATATACAATCAAATTACTGTGTTTTAAAATCACTTAAAATAG--TTCCTTCCTATAATTATACCACTCAGGCTTCTTTGTTTCATTTTGCTTTCACTTTTTAGattttttttttaaataattaaaaCTCTGTTTTAGAGTTACGTAAAACATTTATATGGTCT a score=13 s hg19.chr6_ssto_hap7 2099747 220 + 4928567 tagatatagagtagcatccagatttccccacttctcttttttttaaatgaacattgggatacaattgacatacagttt---gacctttctttacttaacaataggtgctgtcaatcagcccatggcagtatgtagagatatttattcttt------------tttcaatgctccatagtacttcatatttaatttagtcagtcccttgttgttagacatttgggttatttccagt s canFam2.chr31 20068467 204 + 42263495 GA---ATGGGTTTCCAGCCAAAAAGC------------------AAAGCAAAGTGTGTATAATATGGATGTATTATTTTTCTCCCCTTTTTCACTT-ATGATACATGGGG---AGCAAATCATAGTTATATACAAGAGTACTTGTTCCTTTGTAGAGCTGGATTTCAGAGAT--ATAGCACACTTTATTCAATTGAATC--TTCATTG--GAAAAAAATGTGGCTTATTGCTAGT a score=5550 s hg19.chr6_ssto_hap7 2100120 240 + 4928567 agtcttttgttatgacaaatagagctgcaataaa--tagcc-tacacaaatactttttcatatttttgccagtgatgttttggaatagtttcctagaaacggta-ttgctgg----------aaatgcatatgtaattttgctagatacagccagtcaaattcccttccata-gagattgcctcattttgcattcc--tagtcacaatgtactagaatgcctatttccctatagctttgccaactacatgtattgac s canFam2.chr4 18412676 253 + 91483860 agtcttttgctattataaacagtgctacaatgaatgtagccttgtgcacatgtcattttgtatttatgccaatctatgcttgggatatatgcctaggagtgagatttactagatcaaagagtaaatgaatatttaatttagctagatattgc----ccactttcccaatatatgaggctgtattcctttgtattccaatagataatctgtgaaaaagtgcctatttctccataggctcaccaaatggctatgctgct a score=1769 s hg19.chr6_ssto_hap7 2100380 36 + 4928567 gatctgataggtataatatgctaccttaggatagtt s canFam2.chr4 18412958 36 + 91483860 aatctgacaggtgaaaattattacctcagtatagtt a score=605 s hg19.chr6_ssto_hap7 2100442 28 + 4928567 gtttttgtttttgttttgttttttgttt s canFam2.chr12 3584736 28 + 75515492 GTGCTTGCTTTTAAATTCTTATGTAGTT a score=5363 s hg19.chr6_ssto_hap7 2100672 126 + 4928567 AAATTTATCATTCTTTCTCTTCAACTGCAGCTGAAGATTTAGCCATAGTTATGCAAGTCTTTTCCACTCCCAAGCTGTAGAAGAATT-------TATTTCCCTTTAATA---TTGTGTGGTTTTTGTT--------TTTTAAAG s canFam2.chr12 3584764 141 + 75515492 AAATTTATCAATCTT---CTTCAATTGAAGGTGGATTTTTAGCTATAGTTATGAAAGTCTTTTCTACTCTCAAGTTATACAGAAATTCTGCCATTTTTTTCCTTTGGTACTTTTATAGGGTTTTTTTTAAAGACTTTTTTAAAG a score=21317 s hg19.chr6_ssto_hap7 2100798 463 + 4928567 TCTCATATGGAATTTATCTTTTTGTATGTATGCTATGATAAGTGGACCAACTTTTGTCTTTTTTCATATAGAGTCTCAAATTTGATATTACTAGCTCCTCTCTCCCACCCCCTCCCTTCAGCTTGATTTTTCCTGGACATTTTATTATTTTC----TTGGCCAAAGCTGGACATGGATCAAAATAAACGTCTGTTCAACTCCCTGTGTTTGGTTCCATTTTGCTGCCTGTTTTTCTTTCCTGGATTCTTTGTGATTTCAGCACAGTGTTTTTCCAGCCATTCAA-GGAGTTATGACCTTTAGGGCTTGAGGAAGAGTGCATTAAAGGCCTGTCCAGAGAATGATTCAAGGGGGAGTGGATCCTGTAGACGTCCAGGAGGGCCCAGCTCTACTTGGGCCAGGGGGT---------TGGAGAGCTGCTTCTCAGGAGCAGGAT--GGCCACTCACGCGTGTGGAGCACTCAGGAGCCCAGt s canFam2.chr12 3585128 441 + 75515492 TCCTATGTAGAAGTTATCCTTTTGTATG----ATATGATAAATAGATCAAATTATTATTTTTTT---ATAGAGTCTCAAATTTGATATTATTAGCTC-TCTTCCCAACC---TCCCTTCAGCTTGCCTTCTCCTGGACATTGTATTCTTTTCCAGGTTTGCCAGAACTGGACATGGATCAAAATAAACACCTATTCAACTCTCTGCACTTG-TTCCGTTTTGTTGCCTGTTTTTCTTTCCTGGACTCTTTGTGATTTCTGTGCAGTGTTTATCCAGCAGCTCAAGGGAGTTATGGCCTTTCAGGCTTTAGGAAGAGTGGCCTAA----------AGAGAGTGATTCAAGCTGGAGCAGGTCCTGCAGAGG------------CAGCTCTGCTTGGGGCTGAGGGTAGGGGTGGGTAGAAAGTGGCTTTCTGGGGGCAGGGTGAGGGTGCTCACTC----AGAGCACTGGGGAGCTCAGT a score=17527 s hg19.chr6_ssto_hap7 2114158 576 + 4928567 GAAACAACTCACTCTCTCGGCATCAGCCTTGTGCCTACACCCACAGGAGCAGGAGCACAAGCCATTGCAGGTGCGGGCTCCTCAGATGGAGCA--ACTCCAATGTCACCTGCTCCTCACCTGTACCCAGTGGACTTTTTTGGCAGCCTCCCCCATCTTCTCGTGTGGCTCCATAT-------CTTTATATCTTCTGTGGCAGACGTAGCCTGCTGCCTCCCCAAACTCCATCGTCCTCTTCTCCTTCAACCATGGAAACTTGATTTTGTCTGTGGCATCCATGTGCCTCTTTGAAACACTCAC-CTCCTCAGACTGCCTTGAATCCAGGGGTGGCCACATGAC----TGGGTAATGAGTCACCAGTAGAAGTCGGCTTGATGGGGCTTTTAGGGAAACAACGGCTTTCCTGTTTTTGTTTTTCTTCTTCTTTTTTTTAAATTTTCTCCTGCTACCCCTCCCCTTGTTTGTTTTTAAGATGGATTTGTTCAGAACACAtcttttgctctttccttctcctttctgcctggaatgtagatgtgatgtctgaaggc-------agagcaaccatcttgcacatgtgacatagaaaggtag s canFam2.chr12 3601617 543 + 75515492 gaaacaatccactccctctctatcggcctcaTGCTCACACCAACAGGCACAGGAGGCCAAGCTAT-GCAGGTGCCTGAACCTCTGATGGAGAATTACTCAGATATCCCCTCCCCCTCATCCACTCAGAATGCCCTTTCTCAGCAGCCTCCTCTATCTTGTCATTTGGCTATTTATTGGATGGCTATGTATCTCTGATATCAT-TGCAGCTGATTGCTGCTTCAAATTCCATCATCCTCATCATCCTCTTCAATGGAATCTCAGTCTTGTCTG-GGTGACAATATTCTACTTAAGAACACTTAAGttccccatactcctttgcatctaggggtggccacatgactatatggctaatgagtcatcaacagaagtctgcctggtgtggctttcagcaattcaagtgctttcctg-----------------------attaaa----------------------------aaggaaaagctagattctgttgcaacatgtcttttgctccttcctcttcctttctgcctgaaatgtggatgtgatacctgtaagtggctgtaagaacagccacttagcacccatgaggCAGAAGGATGG a score=2239 s hg19.chr6_ssto_hap7 2117563 46 + 4928567 ACTGGGATAGGTGGGAGGGAGTTACCCATGTGGGCAACATTAGGGA s canFam2.chr12 3602160 42 + 75515492 ACTAGTATAGGTGGGAGGTAGCCACTCA----GGCAACTTTGGGGA a score=10143 s hg19.chr6_ssto_hap7 2117865 240 + 4928567 CATTCTACCAAACCAGAAGTGATGGATCAACTCC-CAGCAA-GCCTTT---AGTGGGCATTGTTCTTTTCAGGGAGCTGGATAGAAGAGGGGTCTCGGAGCCAC-AACACCCGTGCTGCCCATGATGGTAGAAAAGGGAAGTCTAAAAAGAGTTTGGGTCTGAACTGGGGCCTAGGAAAAGTTAATGGGGCAGTGATTTTGGCCTTTTCTACCCACCTCCTTGTAATAATATTATTTTAACAATCT s canFam2.chr12 3602202 240 + 75515492 CATTTTACCAAACTAGAAAAATTGGGTCAATGCGGCATCAACGTCTTTCTTAGTGAGCACTGTCCTTGT---AGTGATGGATAGAGGCGGGGTCTTGGAGCCTTTAACACCCATCCTGCCTGTGATGGTAAGAAAGGAAAATCCAAA--GAGGTTGGGTGTCAGCTGAGGCCTATGAAGGGCTAATAGGACACTGATCTTG-CCTGTCCTACCCAACGTCTTTTAATAATATCATACTAATAATCT a score=34193 s hg19.chr6_ssto_hap7 2118444 619 + 4928567 TACCCCCATGACGTTGCCTCTCTCTAGCCTCCCAGGGTATTTCTGTAGTCTCAATATTTGGCCTTAGCTATAAGAAAATTTCCTTACCATTACTCTTTGTTTATTGTGCAATTCTCTGAAGATATTCTTCTGATGG----------------CATTCTTTCCTCTCCATTCCTTGTGTGTCATCATTATTTCTTGCTTATTCCTGTCTTGTGCTTACTTCCTGAAATCTGATCTATCCTTTA-GGCCTATCTCAGAAGCCTTTATGAAGCCAGCCTGCACGGAGACACTTTCCTTCTCTGGAACCC-ATGGCACTTAGCTGCTATGGCTTTTGTGCTCATCAGCAAACTGGAATGCGCTTCCATTAGACTTATCCTTTCAC----CTTAGATTCCTTAAGGCAGGAACTGTCCTGTACTTAGCCTTGCTCTTGTCATGTTGTATTTACTTGATAATTATTCCTTGAATTTAACTGGAAATTCCAGTTTGGAAGGAGAGGACATATATACACGAAGCATGGTATATTTAAATAAACTGGAGTTAATTTTCCTTCAGAAATACCTCCTATTTAAGCCTTTGCCACACAGGTATAGGCCTGGAAATAAAAGG-----TGTGGCTAAAAGCTACCTGCTCAGAGAACTCt s canFam2.chr12 3602442 635 + 75515492 TTCTCCCATGACCTTGTCTCT-----GTTTCCCAGGCTATTTCTATAGTCTCAGTATTTGGCCATAGCTTTGAGAAAATTCTCTTACCATTATTCTTTGTTTATTTTGCAGTTCTTTGAAGATATTCTTCAGATGGATTTTTTGTCATTTGTCTTTTTTTTTTCTCTATTCCTTGTGTGTCATCATTATTTCTCGCTTATTTC-GTCACATGCTCACTCCCTGAAATTTGATCTACTCTTCAAGGTCCGTCTCAGATGCTTTTATGAAGCCACCCTCGATGGAGACATTTCCTTTCTCTGGAACCCCACAGCACTTATTTTCTGTGGCTTCTGTGATCATCAGCAAACTGGCACGTGCTTG-ATTAGAC--ATTCTTTTACTACCCTGTAGCTCCTTAAGGCAAGGATTGTCTTGTACTGAGCCCTGCCCTTGGAACACTGTACTTGCTTGATAAGTATTCATTGAGTCCAAATGGAAATTCCAATTTGGGAAGAGAGGACAGACA--CACTAAGCATGATGCATTTAAATAAAATGGAGATCATTTTCCTGGAGAAATGCCTCCTATACATGTCTTTGCTACCCAGATATAGGACTAGGAAAAAAAGGGAGGGCATGGCTGAAAACAACCTGCTCAGAGAACTCT a score=30324 s hg19.chr6_ssto_hap7 2119374 709 + 4928567 TCTTCAGATTTTCTTTACAGATTCTTCAAACTGTAAAATAAATGAATACCATCTCTCATCACCTATACCTAGGAAGTGCTGAGTAACTCTTTCCTATGGACCCACTGAGTCAGAGGTTCACATCTGGTTGGGCAAGTAGTGGGTGTGATC--------AGTGATGAATATTCTTTTGGTTTCAGCA-CCAGCATCAGCTATTTATATGTCAGTGATGCAAATCTCCATATGCAGAGTCCTTGATACTGTTCGGAGTGCTTCCATACCCATGCCCAAACTGGACCCAGCGGGGGTGGCTGCCGAGAAAAGAAACTTGACAGAGCAGGTTCAAAGGGTCCCTGGTTTCTTGCACTGGAAGTA---------TTAGGGTGGGAACACAGTGGGAGAAGAGAGGTGGAATGTCACAGTTCTGACAGCCCTTAGCAtggagatagccagcagccaattagatatgggaatcagaagcctagcagagagga---tagctggagagtacatttcaaagtcactgccatataaacaggaattaaaac---cctgatagtgggtgggatcgc-ctgggagagtacggaggaagaggaggatggattcagaatggagtcccagtgcttgggtagtgcatggaggacaggacccctgaacaggccggcaaagtgtgggtagagaggtcaaggagagagaggag---aagttactgtagaaatcgata------acttc---aacaaatgagagagag s canFam2.chr12 3603077 709 + 75515492 TCTTCAGG----------AGAAACG-CAAGCTATAAAAGAAATCACTGTCACCTTTCATCACCTGTAATAAGGAAATTCTGAATAACTCTTTCCTGGGGACCCACTGAGTCAGAGGTTCACATCTAATTAGGTAAGCAGCAGATGTGATCAGGGAAGAAGTGATGAATATTCTTTCGGCTTCATCACCCAGCATCAGCTATTTATATGGCAGTGATGCAGGTTTCCATACGTAGAGTCCTTGCTGTTGTTCAGAGTGCTTTCA----CATGCCCAAACAGGACAGAGCAAGGGTAGCTGCCTAGAAAAGGAACTTGCTGGAGGAGGTTCAAAGGATCCCTCAACTGTTGAACCAGAAGAAGAGCCTTCTTCAGAGTGGGAACATGACAGGAAAGGGAAAGCAGCACTTCTCTTTCTGGACAG-TTTTAACATTGGCatgtctggcaaccaattaaatgtgagaactggaagctcaggagggagggagtgggctgaagagtagatctcagagtcactggcatgtatgtggggattaaaacatacatgacagtgggcaaggtcactctgggagggtatggagaaaggggagg-----------gtggagtcccaaTACTTAGTTGGTGAGTAGAGGACAAGACCCCTGAGAAGGCC----------AGGAAGGGAGGTTAAAACTAGGTAAGAGAGCAAGTTATCATGGAAATTAAGAGTTAAGACTTCTGAGACAagagagagagag a score=12330 s hg19.chr6_ssto_hap7 2120121 561 + 4928567 tttggcgtggagcaaagggatggagtgagtggagtaaaagcgaagatggaaggtggatttcagtggtgccagaggggaatg-gtagtaaggagagCgtagtggacatggagatgtgctgctcagatctcccccaaggaaggacttgttgcccagctatgggag----agcagtcagcagacagcctccagccatcagctccttcagggtcccctggctgcaaagagctgcctggtccctcttcctggtcacaccctttctcctggcagctccatgtggtgactaagcagggctgga--tataaatgcctggctctttcagttcaacttgctttgctttgatagacaatactgccccaagctctctgcagagttatgagaggtgtggttgggcctgcagctcagtttaacttctccctctgcccactcctgcttcct---tgcccttat--tcacaggtgttaatacctaattaacatcttgcatcccaact-ttatctcagtatctgtttccagagaacATGGTCTCCAACAGAATCATGGGAACAAGTCTTCTGAAGAGTTTG--AGAGCAGGAG s canFam2.chr12 3603855 451 + 75515492 TTTCCTGTGGGGCACAGGCAGGGGATGCATGG-GAAAAAGTGGAGACAGAAGGTAGATTTCCAATGTATCAGAAAGAAAGGCAAAGCAAGGAGAATATAGTAGACACAGAA--------------------------------------------TATAGTAGACACAGAATTAGGGTGACCGTCACCAGCTGTCAGCTCCTTCAGGGTCC-----------------------------------------TTCTTTTTCTGAGCAGCTCCA--TGGTGACTGAGCAGGGCTGGGGCTGGAAAGGCCTAGCTGATTCATTCCAATTTGGTTTGCTCTG---------------TGAAGTTCTC--CATAGCTATCTGAGAC---------TCTACAG-----------GCctccctttgccctgccctgcctgcttcctccccttactgttacagaggttgactcctagtcaacatcttgcatcccaaatcccatataagtatctgcttccagagaacccagtctctgacaGAGTGGCAGAAACAAGTCTTTTGAAGAGTTTATTGGGGAAGGAG a score=5043 s hg19.chr6_ssto_hap7 2120823 65 + 4928567 CTTTACAAAACATCTTTCTGTATCTCATTTGAGGGTTTTTGCCTACAGTCATTGCCAAGGCCACT s canFam2.chr12 3605426 65 + 75515492 cttcacaagacacctttttgtatcttatttgaggctttttgcctacggtcattgtcaaggccact a score=19533 s hg19.chr6_ssto_hap7 2121495 693 + 4928567 gatctgtgcttttcaacattcatctttttttccatctttgggaatcagagccacacaatctccaa-cttctaatacctttctgcctctttgtgatttctcagagatcgttgatagtgacttggagatactctcagt-taatttttattttggtacttaggaatgtaatccattcagaccaggaggtttgaacacatttggAGCAGCTACTCTTGCTGTTATTATTATTTTTTTCAGGTGTTATGGT--GATTCCCACTTAGCAGTGGCCGTTCTGCTGTTTCCTAGTCAAATTCCATGCTGCTTACTGATAAGCTGGGGGCACT----GGCTTCTGCTCTTGCTCTTTCTTCTGGAAACATTATTCTGTTCCTTTGGACATGGGCAAGGGTCCTGTCCCTAACTTGTCCTTCTTTTTCTTTTGATCTTAACCAGTTTCACTTG-TACCAAGACCAAACTTTCTTACCTTTC-CATGCAGGGAAACAGGCACCATCAAGATCAATGCCCTGGTACTCCTTATGTAGTGAGTGATAGATGCTCAT--GGAAAATGGGGAGAAAACTAAGGGGTGAAAGGGAATAACTCTAAAAAGGACACGTTCACACTTTCT--GACAGCATAG--------------------TTGCATGTTTTCAATTTATTTTGGCCACCAGATGGCATAAC-TGGGCTCATTAA---GATAAACAAAGAGAATGGCTACTACTCTGAA s canFam2.chr12 3605491 683 + 75515492 gatttgtaattttcaacattcaccttttgt-ccatctttggaagtcaaagcca-----tctctggtcttctaacacctgtctgcctttca-------------------tgatggcgactttggtgtaccacgagtatcaccattttttgggtgctctgacatgtgatcttttcatagtaggaagtttaaacacgtttagtgctgctacagtttttcttactttc--tttttttaggtgttgggttctaatctctgtttaccaatagtcatcctacc-cttcccactcaaaagtcatgcttcccattgagaagctggaagcgctcaaagtcttctgctctttgtctctcatctggaaaca-----CTGTGTGAATGGCCATGAGTGAAGGACGTATCCCT---TTGTCCTT---TTTCCTTTTGTTATAGCCAGTTGCACATAATCCCAAGACTAAACTTGCTTATCTTTTTCCTGTAGGAGTCCGGATACCCTCAA------TGCCCGGGCTCTCCTAATGCAGCGACTCACAGATTCTCATGGGGAAATGGGGGTGGGAATTAAAAAGC-AAGGGCAATAACTCT-AATGGGACCCGCTCACACATTCTGCGACGACAAAGGCCCTGCTCAAGCCGGCTACTTGCACGTGTCCAATTTA-TTTGGCCACCAGGTGGCATGACTTGAGCGCGTTTACTTAAGAAGAAAAGAGGAAGTCGTCGGTTCTAAA a score=2562 s hg19.chr6_ssto_hap7 2122240 45 + 4928567 AAGCTCATTTCTAATTCTTACTCCTAGCTGGCTTTTTATACACAG s canFam2.chr12 71908210 45 - 75515492 AAGCCTGCATCCAGTTCTTACTCCCAGGTGGCTTTCTACACACAA a score=4216 s hg19.chr6_ssto_hap7 2122285 100 + 4928567 GCAGG----------------------------GGAGACCCATCTTTGGAATTTTAAGGTTCAAAAAGGAATTTGTCTGTAC-CTGATGGCCAGAAAACCACACTGAAATCGTCAACTGGCATTTAGAA s canFam2.chr12 71908454 128 - 75515492 GCAGGAGAGGAAAATCCAGACTGAACAGGCTCAGGAGGCCCATATTTATCATTTTAAGGTTAAGAAAGGAATTTGTCTGTACTTTGATGGCAAGAAAAACACATCAAAATAA-CAAGTGTCACTTAGAA a score=23323 s hg19.chr6_ssto_hap7 2122395 633 + 4928567 TAAGAGTTAGAAATGAGCGTGTCTCTACCTGCTTCTAGCACACACCTTCCTTTGAGGTAAACTCCTTACTGTTGAGCCCTTGAATCTCGGAGTGGATGAAGAGGGTGATGAGGGATTGTAGCTAATATTAGCATTGTTGAGCTAAAATAC-CATCATATTTTGTCAGGAGAAGTGCTGACTGTCCTGTGGAATCTGAGGATGAGTGGCATTGGTCCCTAAGGATTAGCTTGTCCCTTTCGGTTACTTTTGAATATGATTTGGAACTTGTGGGGTTTGGGTT--------------------------------------------------------------------ATGACAAGAAGGGAACTGAGAAA-GTAAAAACATTCATTGCTTG-TTTTGTGCTTCTACATATTTTTGACTCTGGGAGATTTTAAAGGTCTATTTCTAATATTTGTTCTAGGTGCATAGatttgtttattcaacaagcattccaggcaccatataggggcttggaagaaagagtaaataaggcagagttccaactttcaaagagctTTCTAATCTTGGTTTTTAGTCCCACAGGGGCAAGATGGGAATGCCATGAGAGGCTCTTTGATTGTGGCCCAAGGGAACACTCAGTGCCTAGATGTGTGAAGTGGGATGCAGCTCCTGGTGAAGGCAGAAGTCCTTTAAAAGTTTATTGA s canFam2.chr12 3607262 670 + 75515492 TAAGAACTGGATGCAGGCTTATCTTTATCTGC----AACATGCACTGCCCTTGGCTATAGACTCCTTGA----------------CACAGAGTGGA---AGACGTTAGGCAGGAATTATTGCTAATATTAGCATTATTGGACTAAAACATGCATCCCATTTTGC-----GAAGTGCTAACTATCCTGCGGTGTCTGAAGATGAGTACAGTTGGCCCCTGCATATCAGCCTGTCTCTTTTGGTTACATCCAGATTGGATTTGGCACTTGTGAGATCTAGAGTCCAAGGTAAGGAGTGCCTGAGAGTCCACCGCAGGTGGTCGCAGCTGAGAAGGTGGGAGCAGGAGGCACAAGGCAAGA-GGGAGCTGAGAAAAGTAAAGGCATTCAGGGGTGACTTTTGTGCTTCTATACATTTT-GACGCTGGAGAATTTTAAAGGACTATTTCTAATATTTATTTTAGATGGATGGATTC----ATTCAATAAATCTACCAGGCCTGCTGTAGGAGCTGGGGTTAAAAGGTAAATAAGGCAAGGTTCTAGGCTTCAGGGCACTTTATAGTTTTGGTCATTAGTCCCACAGGGGCAAGATGGAGATCCTAGGAGAGGCTCTTCCCCTGAGGCCCCAGGACAGTCCCAATGCCCAGATGTGTGGATGGAGACAGAGCTCCCAGTGAAAACAAAATTCCTTTAAAACTTTGTTGA a score=11248 s hg19.chr6_ssto_hap7 2123550 245 + 4928567 GCCCATTTCTTATACAAG---AAACATTGAGGGTTTACTAAAGAAAGAAAGAGACAGTAGAATAATGGGAACCACGTTGCAAAAATGTAAATTGCTCACTGGTGACTGCCAGGATTTTGATGATCTAATAAAATGACTGGCATATGAGGTGGGGAAAATGTACCCTCCTGTGAT-----CAGCCAGAGGTTTCAGCAGCAGT---------GGAAGATGCATACCAGAAGGCGGTGCAAAGGGGGATTAGAGAGGATCTAAA s canFam2.chr12 3608587 259 + 75515492 GCTCATTTCTTATATAAGGGAAGATACTGAGGGTTTCCTGAAGAAGGAAAGAGAGAGCAGCATAATAAGAGCCATGTTGCAATAGTGTAAATTGCTCCCTGATCATTGCCGGGATCTTGATGATCTGATAAAATGGCTGGTGTATAAAGCAGAGCAAACATA--CTCTTGTTATACTGAAAGCCTGAAATTTCACCTACAGGGAAGGGAGAGAAAGGTGCATAGCAACAGGCCGTGTAGGAGTGGATTGGAGAAG-TCCAGA a score=3534 s hg19.chr6_ssto_hap7 2124112 69 + 4928567 CTGGTGTCGGGAAAAGTAGTTGGGAAGCTATGGAAATTGCTCCAGTGAGAGGTGATGAACATCTGAATT s canFam2.chr12 3608846 66 + 75515492 CCGATGTCAGGAAAAATAGTTTGGAGGCTATTGAACCTGTTTCAATG---GGTGATGAAAGTTTGAATT a score=21232 s hg19.chr6_ssto_hap7 2124421 480 + 4928567 GGCAGTGGTTAAGGGACTGAGTGGGGACAGATGGGAGATGGATTTTAGGGTAGGAAGGGTGGATGTAAGTGTGAAGGAGAGGAAGAATGACTCTGGAGAGAACACCAGCTCCAGTGGCCTGACCCTAAGTCCTGTGTGCTTTCTCGCATATTG----TGCTGCCTCGTCATATAACGAAGATTCCACtttagtccaactcttccattttacagtgaaaggagaagattaaaacccagaaaATGGAAACCCTCATTTATGTTAAAGCTG----------------------AGAAATCAAGTGTCCCTTCCCTGATCCAATCCTCTTCCGCAGGTTCATGACAggg--tgcacattagaactacctgcagagccttccaagcggcacgtgcctggcccatccctagatccagtgaaccagaatccctgggctgggaccACTGGCTCATTCCAGAC-AGTGCACAAGCATCTCTTCCTGGTGCAACCTTCCATAGCATGTTCCGCTTGGAT s canFam2.chr12 3608914 494 + 75515492 GACAATCACCAAAGGGCAG-GCGGGGACAGAAGGGAGACAGATTTCAGGGTAGGAAGGGCAGATCGAAGGCTGAGGGAGAGGAAGAATGA--CTGGAGAGAACATCACTGCCAGGGGCCTGACCCCAAGGCCTGTGTTCTTTTCTG-aggttgcccatgttgccctgtc----aacaaggacctcactttagtccagttctttcattttatagcaaaaggaggaaattaaaacccaggaaatggaaacccttgtctatggctgaactgcaagatggtggaagactgtgttagaagccaa--gtctcttcccagatccaacctccttccacaggttcacattAGAACTTGCGTGGTAGAAGCACCTGAGGAGCATTTCCAAACACTTGGGCCTGG-----GCCCAGGCCCAGCCAACTGGAATCCCCGCGCTGGTACCACTGGCTCATTCCAGGCTGGTGCACAAGCTTCTCTTCCTGCCATGGTCTTCCATAGCACATTCTGCCTAAAC a score=10200 s hg19.chr6_ssto_hap7 2124901 297 + 4928567 CACTTTCTCTTTCTCTGTTTTATAATTGCC----------------CATTACATACAGCCACTGATAACTGAAAAGGCTCGCAGTGTTTGGATGAGGAACCATATGCAAACAAATACCACAGTTCTTCCTTATAGACCCACT--------------------------------------TAACTGATTTGCAAACATCTCACTGAAACCGCAGGGGAGAGG---------TTTTAGAAGGCTATGCTCCAGTAAGGAAAAATTAATGGA-AGTAATTGTTCAGTAAGCAGTTACCAATCTAAGTTTTATAAAATTGATACTCTCTTTATGAGTGTATTTTAGTAAAAATAGGGAATAGCt s canFam2.chr12 3610394 346 + 75515492 CACTTTCTTTTT-TCTGTTTCATACTTGCATCACATAAGTGCAATACATTACATAGTCCCACTGATCATTGGAAAGATGCTGAGTGTTTAGATGGAGAACTACATGTGAGCAAACACCAAAATCCTTTGCCATAGGTCCATTAGTGATTAAaacaacaacaacaacaacaaACAAACCTAGAACTAACTTGCAAACATCTTATTGAAACTACACGAGAAGGGAGTCTTCTCCTGTAGAAGG--------AAGGGAGGGAAGATTAATGGATAATCATTGTTCGACAAGCACTTAATAATTT--GTTTTGTAAAACTGATCATTTCTTTATAAG----TTTTAGTAAAAATAAGGAATATTT a score=6893 s hg19.chr6_ssto_hap7 2125510 164 + 4928567 AAAGTTTTAAAAAACATGGGTTTTCTAAAGATTTCGGTATTCCCTATCCCTAACTTTTCATAAAGTCCTGAGTTTCTTAATCACAATGTTTTCATCCAAGGAGGCTTTTAGGAACAGGACCCCAGGGTTAGGGCAGGAATACACTATTGTTATTTTAACAGTCT s canFam2.chr12 3611713 148 + 75515492 AATGTCTTCCAGAACATAGATTGACTGAAGATTGTGA-----CCTACCCTAAACTTTGCATAAAGTCCTAAATTCTTTAATCATAGTGCTTTCATCCAAGCCGATTTTTAGGA-----------TGGTTGTAGAAGGAATACTCTATTGTCATTTTAACAATCT a score=18125 s hg19.chr6_ssto_hap7 2125674 384 + 4928567 ATCAACTAGAAAGGCAAAAAAAAA--ATTA----GATTTTTTTCAATATTAATGAAGTTGAATTGTTCGTTGATAATTGTTAATTAGTTATGGTGTTTCTGTTATAAATTGTCTGTGTCTGAATTTCTCACACAGTACAATataaaatacaaatagctgtggggtattttctaggtgctggttactgttctaagagctttaaatggagtaattcagttaatcctgcctcac---------ggtacaataattagt----ctcgtatgacggaggaaatagaagcctggagaggtcaagtaacttgcccaaagtcatacccagaaaggctggattcagagactgtt--------------gccaacattttccttattTATTTGCATTCCATTTTTTTC-TATTAAATATAAAAATTAg s canFam2.chr12 3612048 406 + 75515492 ATCAACTAAAACAGtaaaaattaattattattttgattttttt---tattGGTGAAGTTGAATTTTCTACTG-TGATTTTTAATTAGTTATGGCTTCTCTGCTGTAAACTGTTTGTGTTTGAATTTCTCACACAATACAATAAAAAATAAAAATag--------tgttttctatgtgctagttactgttctaagagctttacatgtagtaagtcagttaatcctgacccaccaggaggcaggtgcaatgattagttagtctcagtgtatagaggacacagagacatgaagaaatcaagtatcttgccccaggtcatacccaggaagtctggattcaaagccTGTGCAAACTACAAAATAGCCAATATTTATCTGATTTATTTGTTTGCCTTTTTTTCCCTATTAACTATAATCATTAA a score=6116 s hg19.chr6_ssto_hap7 2126640 196 + 4928567 TTTCAGCTAATTTAGAACATCCTACCCTTTTCAGAGATTAAAAAATATTTAGATTTGCTCAGGATATGTTAG-ATGAAGTGAGGATTTACATCTACTATATGTATTTTCCCAAATATTAATAATTATTTCTCCTGAACCATTTATTGCATAATATTTTTCTGTTCCATTGTTATATGACAGCACGTTTCTGCCTGGT s canFam2.chr12 3612719 166 + 75515492 TTTCAGTCAGTTTAGAACATCCTCTTCTCTTCAGAGATTAGAAAATATTTGGATTTTTT---------TTAGCATGA-------------------TATATATTTTTTCCCAAAAAA-ATCAATTATTTCTCCCAAATCATTTATTAAA-GACATTTTTGT-TTCTGTTGCTTTATAATGGAAACTTTCTGCTGAGT a score=2474 s hg19.chr6_ssto_hap7 2126875 90 + 4928567 ATGTTTAACTGCCTCCTTGAGGATACTGAAGACTCTTTCCAATGATTATATTCTTTTCACTTCACCTGTCATGCATCAA--------GTGTTGATGTT s canFam2.chr12 3613100 93 + 75515492 ATGTCCAGTCAGCAATTTGAGGATACTGAAGTCTCCTTCTGGT-----TGCTCTTTTGGCTTCATTTGGTGTGAATCTATCTTTAGCGTGCTGATACT a score=9540 s hg19.chr6_ssto_hap7 2126965 284 + 4928567 GCTGGCTGCCTTTCTCAGTGTTAGTTTTTATGTGTTTTGGAATTTCAGCTTCCAGGTTCATTTCCAGGC--------------------------------TTTCTCTGTCTCCCTTCTCTTGTTCCTCACTCCTCCCTGCCTAGTGGCTGTGCAGTTGCCCTTCCCAGGGGCCAGTGTTCAGGACTAGGTCTTATATGGCAGTCGGGGCTCCTGCCCTGGGATAACCCTGGGAATGACTCACATCCAGCCCCATGGCTGTGGGTGGCTCAGTTAAGCCCAGGTGTGGTGCCGTTT-GGTAACCATGGGCCTCCCTA s canFam2.chr12 3613381 302 + 75515492 TCTGGCTGCCTTTCTC-GTGTGAGTTTTTGTGTAGTTCAGAACA-CAGCCAACAAGTTCAtttcttgttgttttttttttttttttttttttctttttttttCTCTCTGTCTCCCTTCTCT-GCTCCTCAGCCCTTCCTGTCCAGTGACTGAGTGGTTGCCCTCCCTGGGGCC---TGTCCAGAGTGAGGTCTTACA-GGCAGTCTGGGCTCCTGCCCCAGTATGAACTTAGGCATGACCC--------CCTCCAGGCAGGAGGGAGCTGTGTTAGGTCCACATGCAGATCCATTTTGGTATCCAGGGACTTCACTA a score=1494 s hg19.chr6_ssto_hap7 2127286 22 + 4928567 CAGTCTTCTTGAAGAGGGTGGA s canFam2.chr12 3613722 22 + 75515492 CTATTTTCTTGAAGAGGATGGA a score=34465 s hg19.chr6_ssto_hap7 2127333 910 + 4928567 TCCCTAATATTTTCA-CAGTGACCATGACACTGGTCCCCCACCTCA-GTGGGCAATTTAATTCTATCTCACCACTCAGTACTCAACAGGACTTGACTTCCCAGCTGCCTTTAACTGTACCCTGAGTCAGAACCCAACAGGCCACAGCTGTAGCCCTGTTCATCTTTTGCATTTATATTCAGTTTCTGGGAATATCTTTGGGGATATTCTCCCTTTGTGGAGCATTGCTTTTTAATTTTCTCTAATATTATATCTATCATTGCTCTGTATTGAAAGCCCCTGGGCTAGC----CTGTTTCACT--TGTGTCTA----TTTTTTAGAAGCATTTACTGTAGCTTTATACTACATATTTGGGGATCA--CTAACAATTTTTTCCGGTCACACTCTAATCACTTTCTCAAGGCTGGATCAGGTGCGAGACTCTGTAGCAGTAACCTGAAGTTGAGAATTGAGGAAGTAGTGCTGC---------------------TATGAGAGGAGACCTGCGGTGGCATCCCTAGGATGGGGTGCTGGTGGGGGGTGGGTGGCAAGGGGGAAAGGGGGTTTCTGCCTAAGGGAGTTTCTGCTCCATGCCAGCACTTCATCAGAGGTCTTGAGCCAGGGTGGAATCCAGCTCCAGGGAGCATATGAGAGCAAACAATGGAAGCTTGACATGATCACTGGATGAAC-ATCTGAAGTTTCATATGTGATGGGATCTCCCCAGAAAACAATAGTGCACATCACAGCCAGGAGGCACCCAGAGCATTGTGTTGCTGTGTTTTTTGAACCCAGTGAGTTAACTGTCCAGTGTTCCACATC-ATTCTGACCTGGGTCAA---------------------CAGATGGAGGCAGGGCACACTCTTGGCTGTAGCTCGATCCGCCTCTCCTGCTGCAGCAGGACATTTCTCAGTAGCACAGGCAAGGTGCTCCGGGCAGGGGACTGCAT s canFam2.chr12 3616005 892 + 75515492 CTCCTGGAGTTTTGATCAGTGAGCATGACTCTGGTCCCCCACCTCAAGTGGGCAGTTGAATTCTTTCTCATCACTTG-------ACAGGCCTTGGATTCCTAGTTGCCCTTGGCTGTACCTAGACTCAGAGCCCAACAGGCCACTGCTTCAGCCCTATTAATTTTTTGCATTGATATTCCATTTCTGAGAATATCTATGGGGATA-TCCCCCGTTGTTGAACATGGAGTTTTTATTTTCTCCAATATTTTCTCCATCATTGTTCTGCATCAAAAA-CTCTGGGTTATCTGTTCTGTTTCACTCACGTGTCTGTGTCTTTTGTACAAGTACGAACTGTAGCTTTGTGCTACATGGTAGGGGGCTATTCTAACAAGTTCCTCCAATCATATTCTGCTAACTTTCTCAAAGCTGGATCAGGTAGGCGGGGCTATAGCAGTCACCTG-AGATGAGGCTGGGGGAAGCGGTACTGTCCCCCACCCAACACAAGGATGCATGAAAGGAGCCCAGGGATAGCAGCTTTAGGATAGG------------------------------AGGAAGGTTTCTGTATGG----------GTTCCATGACAACATTTCATCAGGGGTCTCAAGTCAGGCTGG-ACCCAGCACCAGGGAGCATATGAGAACAAACACTGGAGGCTGGAGATGGTGCCTGGATGGACAACCAGAAGTGTCATATGTCATGG--------------------GTGTATATGATAG-CAGGATGCATCTAGAGCATTACTTAGCCGTGTCCTTGGGACCCAGTGAGCAAATCATCCAATATTCCAAATCTGTCCTGGTCTGGGTGAGGAGGGGATTCTCAGTTCTTTTCACATGGAGGCAGGGCTCATGCCTGGCTCTAGTTTCTTTCCCTTCTCCTGCTGCACCAGTA---TTCTCCATGGCATC-GCAAGGTGATCTCAACATAGAACTGCAT a score=20736 s hg19.chr6_ssto_hap7 2128253 692 + 4928567 GCCTCCTTTGCAATATAAGCCAAACAAGGCTTCCTGCTGGAGCGCCTCTGGGCT---AATTCAGGGGCA-TGAGAGGCAGCATCTACCCTTGCCCAGGGGCCCTGGCTCCCCTTTACTATGGGGGGTGGCCTGTGATCAGGCCCAGTGGGACTGAGGAGCAAATGTGGAC-AGTCTTCCCCGGCACACATCGGCTGACCTGCATGCCCAGACTGTCTCCTGGGGCGCCTGTACAAGTTGGTCCTAGAATCCAGTTCTTCCTGGAACTGGGTGTCATTTCAGGACAGAGAATACCGGGAGTCATAAATTGGCCCTGAAGCAAACGAAAGTCTTCCAATCCTGCATGACATAGCAGATTGTTTTGCTTGGGGCTTTGGCTTGGTCTGGGGCGTGCAGTTCCATGGGGGAACCTCTGGCAATCCCACCAGGGGGAGCCCTTTCCCCATCTTGGGGCTGTGGATCTCAGCTTTCCAGAATATTTGTGTGCATGTGAGTGAGCACATCTGACTTAATTTTTAT---ATTCAGTATAGAATCATGACTCAGCTTTCCCTGTTAATGTAGTCAACTTAAGCTACTGCCATGGTTCAGGTTCCATCATGCTTCAAA-TATAGT--TTATGACTGTAGTTACGTAGTGTGGCAGCAACACAGGGCAACTTGGGGCTGGGGAGAAGTGAGCGTGTCTT----TCCCTCCCCAAATGC s canFam2.chr12 3617102 654 + 75515492 GCCTCCTTTGCAATATAAAGAGAACCAGGCTCCTGCATGTGTCCCCTCTTGGCTGTGAATTTAAGGACAGTAAGGAGCAGCCTCTGTCCC--ACCAGAAGCCCTGGCTCCTCTT-----------GCCACCAGCCTTCTGGCTCAGTGGGGCTGAGGAGCAGACATGGGCTGGTTTACCACCAGACACACTGGACTACCTGCTTGGCCAGACT--------GAGCACCAGTGCAAGTTTGTCCCAGAGGCCAATTCTTCCCGGAAT----TGTCATTTCAGGACAGAAGATGCCAGGAGCCATGACTTGGCCCTTCGGCCCATGAACGTCTTCCAGTCCTGCCTGAGATGGCAGATTGCATAGCTAGGGCCGTGGGCCTGAGCTGGGATG-GCAGGTGCGTGGGGAA--CTGCGGGAAGCCTGCCA-GGGGCGCCCTGGCCACATCTTGTGGCGGTGGGT-----CCTCCCAGAGTACATGCGTGGGTGCGCG---------CCCATTTAGTTTTTCTGCGATACAGCACTGACCCATGGCTCCACGT--CCTACTCACGTATTCAGCTGGACCTACTGCCGCCGCTCAGGATCTGTGGTGCTTCAGACCAGAGTGGCTACGACT--------GCAGCACTGCAGGCACACGTGGCACAGTGGGGTGAGAGGGAGAGGACAGTGCTGTGTCCTCACTCCCCAAATGC a score=30709 s hg19.chr6_ssto_hap7 2131329 857 + 4928567 CTTCTGC--CTCATAAATTTCAAACATGAGACCTC-ATGGGAACTGAAAGGATTTATGACATAGGCCAGGTATTTAGGAGAAATGGACACTAAGAACAACCATCCCCTCACCTTCCAACAGAAAGGGGTTCCCTTGTGCTGGTGGGGCAGAGGGGCCATAATAACAATGTGCACATTTGTGGGTATTAGAGAAAGGGGTCCCTGGGCTGAGTCCTGGGGAGGTGGCAGAAATGGCAGACAGGTTTGTGGGGTCAGACAGAAAG-CTCTGTCTTGCTTCGTCTTTGAGCCAAAGGGGACCTGGTGCCCCTGAGTTGGGGGCACTGTGTGGTGC--CCAGTCACAC-------------TCTCCG--TGGTGT------CCTCAGTGAG---------------------------------------TGGCACTCATTGAGGGACAGGAGGAGCAGAGCTGCTCCCAATAGAG----AAGCACTGGAGCCCACACT---GCCTaaagtgggaatgacccaaatagccttcagcaggagaaaggg-------gaggaaaattgtggcatatgcatgcagtggaatatttctcagcactgaaaatgaatgttcctataactgcatgtgataa--caggcaaatctgcagacataaagtcgagtgaaagaagccagctgtgaaagagcacat--tgtatgattccatttatataaagctcaggtccaggcaaaatggtagtagtgaggagagaggttgtcctttgggg-agggtagtaactaaaa-ggcacaggaggg-ggcccctggcatcctgggaatgtcct-ttccttaatctaggcactggttgcatgcatatgct--gtttgcgaaagttctttgagctgtacatttaa-aattaatgcacttctctgtatgtatgttttatttatataaaaaCATTTTTTTAAAA s canFam2.chr12 3618646 904 + 75515492 CTTCTGTGGCTCCTGAGTTTTAAATACTAGACCTTTGAGGGAAATGAAAGGATTCACAGCAAAAGCCCAGGATTTAGGAGAAGGGGAGTCTAAGAGCAAC-ATGCCC-----------------------ACCTTGGACTGCAGGGGCAGAGGGGACATGATGAGGCTAGGGACATTTGTGGGCCCTAGAGGAAGGGGTCCTTGGGCTAAGCCCCGGGAAGGTGGTACAAGTGCCAAGAAGGTTTGTGGGACAGGAGGGAGGGCCTCTGTCTTGCTTCG---TTGAGTCTGGGGCAGGCTGGAGCCCTTGGGAAGGAAGTACTCTGTGGTGCTGCCAGCTGCGCCAGGTGTCAAATGCCTCAGATTGGTGCCCTATGCCTCAGTGGGGCGCTGTGTCTCAGCAGGGTCCTGTGTCTCAGGGGGGCTTGGCCCTCAGCGGGAGGCAAGAGGAGCACAGCTGGTTCCAACAGAGTTATGCCCACTAGGGAGCATGCTACAGcctaaaccagaaactgcccaaatatccttccacaagagaatgagaagaaaaaagaaaaattgtagcagtttcatgcaaagagatgcttctcagcgatgaaaatgaatcatctcgcagctccttgcgatggcccaggtgaatctgcagacat--agtctagtaaaagaagctgactatccaagggcacatactgtcaggttccattta-------------tccagacatgaatgtagaagccaggagaatggttaccctttggggaagggtagtgactaaaaggggacatgagggcggcccctggcattctgggaatgttttattccttaatctaggcgctggttgcatg-atatgctcagtgcgtggaggttcattgtgctgtacacttaacaatttgtgtccttttctgtatttatattatattaatg-aaaaTCATTTTTTTAAAA a score=3171 s hg19.chr6_ssto_hap7 2132534 65 + 4928567 CCTTTTTATGGCTTCCTGAATTGATCTCATGGATTTTTTATCTGCATCAAAAATGGAAATGGATT s canFam2.chr12 3619976 65 + 75515492 CCTTTTAATGGCTTCCTGAATTGATCTCATGCATTTTTCAGCTCTTGTAAAGACTTTAATGAGCT a score=16416 s hg19.chr6_ssto_hap7 2133496 446 + 4928567 aGATGGGTTTGTGTTATTGAGAGCCCTATTTGCTGCCTCCTTCACAAGATGCTAGCTGAACTCTTGAGCATGGGCATCAGCATTGGTAAATCTGGCAGTAAGGCCTGTGGGCTGCTCACATCAGCCAGGCAGACATT--TGATTAAGTTTGAGATCTT---GATGTCTTCACCAGAGCCACTAAGTTTTATATATGCCATTGTTGAAGCCAACCCCAACTCACCTGGCAATCAGCTGGAGGAAGGGGACTACTTCTATTCATTgc---agatttaaaagttggctacatatcctttgctacttctcccattgggaggtgggga---------ccccttaaatctgggt-ggctgtgtggctgctcgagcgacacaaattgttggaagtgatgctaaaccagcttccagcacaggattcaatagcaccttccacctcctgtctcctggagcattctctgggagcc s canFam2.chr12 3620041 432 + 75515492 AGATGGGCTTGTGTTATTGAGAGC-------------TCCTTCATCAAATATCAGCGGGACC----AATATGAGCATCAGCATCCGTAAATCCAGCAGTGAGGCCTGTGTGGTGGTCACAGTAGCCAGGCAGACCCTGCTGATCAGGTTTGAGGCCTTCCTGGTATCTTCTCCAGGGCCATCAAGGTTCACAGGCGCTGTTGCTAAAGTAGGACTCAGCTCACCTGG-AATCACCCAGAAGGAGGGGTCTACTTTTATCTAGtgcgggagatt--aaagacggtcacaaatcctttgctgtttgtcccattaaggggggggggggtgggtgttcccttgaacctgggcaggttctatggctttttgatcaataagaattggta-aagggatactgggccattttccagagctag--------gcaacttccacttccc-tctcttggaaca--ctctgggaacc a score=7794 s hg19.chr6_ssto_hap7 2134578 180 + 4928567 aagaagttcaaattccctgccactgcctgctggagtggccgagtatggtactctggccaaccactagcagagcccagctgtccccacaaaggtgacaaaaatgtgaaggaagctgtcttgaacactccagaccag--ccagctgccgaagatggcattgagtgactccagttaacatcaagc s canFam2.chr12 3620487 168 + 75515492 aaggagtccaaattccccaagactgcatg--------------tgcagtactctcgtcaactaccagtggagtccagctgtctccaccaaggagacagaaatgtgaggcaagccgtcttggacactctagaccaagcccatctgcatctgatggtgccaggtgatttcagccaacataaaga a score=34249 s hg19.chr6_ssto_hap7 2134764 1064 + 4928567 gaattgctgaactgacagacacaattttt-tatgtaaggaagtggctgttgttgtaagccactaggtttgggatggcggttgctcagtgatagataactgaaacaGCTGTATCTGCACCTGGACCAGAGCTTTCATGCCCAGGGTGAGTAGCTTCTTGGTTCTGTAAGGCTCTGTCTCCTTCAACTCACTTTGCCGGGTTGCGGCTACAGCATTACCCAGCTCTTCATTCCATTACAGTTCATCAAAGCTCCCATGCCAGGCTTGTGGCAGGGTAATTTACTGTGGA-ATTGTTTTGTT-TTGTTCTTGTTGCTCTGTGTATACTCCCCTCACCAAGAG------AGTTACTGGGCT-----TTTTGTTCCCAATTCTGAGGCTCTTTCTTGAGTATGGAGAAGGTGGGTAGT-GATGGCATTTGGATTATGCGCAAACACCTAGGCTAAGAGAGGCAGAAGTGGACTGTGGGTGTGTCTTGAGCAGAGGTTGAGATTCTCTAGGGTCTGGAAATTTGGTGCTTTCTC-CCCACGAGTGA-GGAGACCC------CCACTTCTGCCCAGAGCATTCCCAGGCTGAAGGATTGCTGGAGAATGCCCAGAGA----AGCCATGATTTCTCCCAGCTAGGGGCACAGAGGCCAGGGT-CCCCAGGGAGATTCTACTATGGGTGATGTGGACATTGCTGATGTGAGGGGAAGTGCTGGGCCTGACCCAGAGGACATCACTCCAGGACTTGACTGTAGCCTCTGAAAGTAGAGGCAGCTAGAGAAACAATAGTGGCTTctatgggctaaatgtctctgtccccccataattaatatgttgaaaacccaacccccagtgtgatgatatttggaggtggggccttttggaggtacttaggtttagctgaggtcataagggtggagcccccatgtgtgattagtgcccttataagacgagttagagaccagagctctctctcggccat----cggta--gtgagaaggctgcagtctgagaatcaggaagagagccctcagcagacatcaaatctgctggtacctggatcttggacttcctagtctccagaactgtgagaaataca s canFam2.chr12 3620809 967 + 75515492 gaattgccaaactgacagacaaaatcatgagatatgaggcagtgttgtttgttttaagctattaagtttggcatagttgttttccagcaataggtcaatggaaAAGTTGAATCTTTCCTTAGACCAGAGCCTTTATGCCCATGATGAGCAGCTCCTTGGCTCTGTAAGAATTCATCTCCTT-AACTCACTTGGCCAAACTCTGGCTAAAAATTTAACTAACTCTTTATTCCATTAGAATCTATCTAAGCT-----GCCAGGCTCATGGCAGGATAATTTATTGTAGATATTGTAGAATTATTTTTCCTGTTGCTCTATGCACATTTTCCG-ACAAAAAGTTATGAAGTTTTTGTTCTCTATTTTTTGTTCTCTATTCTGAATTTCTTT-TTGTGTATGAAGG-TGTGGGTGGTTGTTGGCATCTGGATTGTGTGCTAACACCTAGGTGGACAGAGACAGACGTGAGCTGTGGGTGTGTGCTGAGCTGAGGCTGGGATTCTTCATGATCTGGAGATTTGGGGCTTTCTCTCCTATGAGTGGTGGATACCCAGGCTACTAATTTTGCCCAGAGCATTCCTAGACTAAGGGATCACTGGAGAAGGCCTAGAGAGCCTGGGCACAGTTTCTCCCAA-TAGAAGCACCGAGGCCAGGGTCCCCCAGAGAGACCCTATTGTCAGTGACATGGATGC----------ATGGGAAG-GCCAGGACTG------------------CAGGGCTTGACAACAGTCTCTGAAAGCAGAGGGAGTGACAGAAACGGCCACtgctacagtggactgcatgtgtgtg-ccactgaaaattcctgagttgaagccttcatccccagtg----------------------CTTT------------------------GTAACAagagt---tccccc------------------------------------------ctctctctctgccatgtgaggataccgtgagaagccagccatctgcaggccaggaaaagagctctcatcggacactgagcctgccagcacctccatcttagacttcctggcctacagaactgtgagggaaacg a score=15291 s hg19.chr6_ssto_hap7 2136450 326 + 4928567 ttgtcatttaagtcacctagtctctggtattctgtcacagcagctagagcgaactaagTTGGCTATCCTGAGTACTAAGGACCTGGCCTTGCTCCCAGCTTTTCTGgtactgcctaagcccctggtattttgtaatgtgttggagggaggagacagccccactaatgactagggttgaatttcctcccagtct-tctgggtaggacacagagcagattacatttgattgagtaaaagtaaggaatgtgacatttcatgcacatttTATAGCCCCAAATGACAAAAATAACATGCTTCTCAAGCCACCTGGAACATTTTATAGCTTTC s canFam2.chr12 3621776 314 + 75515492 tcgtggtctaagccacccagtctgtagtatttcattgtagcagcctgag----ctaagacaGTTACC------ACTAAGGGCCTGGGCTTGCTTTAGATTTTTCTGGTATAGCATAAGCCCCTGATATTTTATAGCCTTGTGGAGGGAGGACAGAGCCCCACTGATGACTAAGATTGAATTTATTCCCAGCCTGGCAGGTTGGGGTACAGAGTGGATTCCATTTGGTTGAGAAAAAATAAGGAATATGACATTTGGTGTACATTTTATAATAAAAATTGAT--AAACAACATAATTCTCAAGTCA-TTGGAACATTTTATGGCCTTC a score=9544 s hg19.chr6_ssto_hap7 2136776 229 + 4928567 TGTTTTTTTTGCATTGTAGGCTCCTGTGTCCATCAATTTATCAGCATTTTTCTTGGCAAGGATTCCCTGAAATGTCTCCAAGTTTGGAAATTTTG-----------TCTTTATGAAAAGTGGGGCATGGGACCAGAGGAGGGACTTGGTCAGAAAAACAAAATACGATTATTTTTGATCCATGTCCTTATTTCTTGGTTACTAAATAGCTGCCCTCTGTATTTCTTTGATTTTAATAAAT s canFam2.chr12 3622289 237 + 75515492 TCTCTTTTTTACCCTGC-GGCTCCTCTGTCCATTGAATTCTAGGCTTTTTCCTTGGCAGGTTTTTCCTGAAACCTCTCCAGGCTTGGaatttttattttattttattttttaCAAAAAGAAAGGCATGAAAACAGAAGAGAGACTTTCTTAGAAAAATAAAACCTGAGTATTTTTTATGTACATC--TATTTCTTGCTTACTGAATATTCGCTTTCTATATTTTTTTAATCTTTATTTAt a score=783 s hg19.chr6_ssto_hap7 2137317 25 + 4928567 TAGTTTTTAAAATGATATTTCATTT s canFam2.chr12 3622731 25 + 75515492 GAGTTTTAAAAATTCTAATCTTTTT a score=23803 s hg19.chr6_ssto_hap7 2137617 483 + 4928567 agctgttcctcctgccttt-ttcattttgacagctctatagtattccattggtggatcgaccagagctgtgtgttcg-ccagtctcctattgctgggttgttgggctgtttc------tgatccgttgttattataaataatgccacaatgaataaccttatacctaagcaagtttacctttgtgtaggtgaatctataagatagattcccagaagggggatctctgggtcaaagggtttgtgcatgtatagttctggtagatattgcaggt-ctgctccacagaactgtgccatctgcactgctgccagcaatgcatgggacagtctgtttcctctcagcctccttcacacactgtgatatcatattct-----------------------------ggactcttgccaaccAAGGAAAGATTTATGTATAAGTTCAACATGGATGCACTTAGGCTAATTCTCCTTCCTGCATTTCCTTCAGAACATCCTCAGTCTCCTCACTCATTTCAGATACCTTA s canFam2.chr12 3624770 515 + 75515492 AACTCTTTCTCATACCTTGGtcccttttgatagctgtatagtattccattggttgatatagcag--ttatatgttcaaccagtcacctattgctggacacttcgactatattacaatatagtaagttgttattataaataatgctacaatgactaaccttacacctcagcaagtttccacttatgtgggcaaatctataggatagatacccagaagggagatttctggatgaaagggtaaatgcatttataattttggcatgtaccataggttctgctcctcaggattgtgccatttgcactactgccagcaatgtatgtgacagttggtttcctc--agcatcactcatgcactgtgatatcacacttttgaatttctgctaaCAACAACAAAAAAATGAATTTCTGCTAACCAGTGAAAGATTT--GTATAAGTTTAACATGGATACACTTAGGCTAATTCTCCCTCTGGCAGTTACCTAACAGTATACTCAGACTTTTCTTTCATGTCAGATACCTTA a score=8867 s hg19.chr6_ssto_hap7 2303040 148 + 4928567 AGTAATCCggaagagcaagcgcgaaaaataactcaaacagacacaattatacaggaataaaaatcacccggcaaatataatacatttggaggatagatccaggaagactaacgtgcaagtaataaggctcaaaacagagaaaaagaga s canFam2.chr12 3749489 148 + 75515492 AGAAACCTGGAAGAGCAAGTGGAAAAAACAGCTTAATTATACGCAACAATACAGAGATGAAAATCACCCAGAAAATAGAAGACACTTGCAGAATAGATTTAGGAAGACTAATATACAAGTAATAAGGTTCAAAACAGAAAAAAACAGA a score=3404 s hg19.chr6_ssto_hap7 2303188 120 + 4928567 cgaaatggaagagaagaattagaagggaaaaaagaagagctggaatagagaaaaaagatttgagtctgtcta-tgaaaagcttcaccaagtacaactctgtaaatatactaaaaaacactg s canFam2.chr12 3749830 108 + 75515492 CAAAAAAACAGAGGTGGATGAGAGGAAGTAAAAGAACA------ATAGGGAA----GGTTTGAATCTGCATGGTGAAAGTGTTCACCAACTACAGCTCTGTAAATACA---AAAATCATTG a score=5765 s hg19.chr6_ssto_hap7 2303961 101 + 4928567 atatactttaaacaggtgaactatatggtatgtaaattatagctcaatacagctcttaaa---TTTTTACCAGGCACATTATGTAAATAAAAATTTTTATTTCC s canFam2.chr12 3750147 104 + 75515492 atctattttaaacaagtgaatcatatggtatgtatattctatttcaataaagttattaaaaTATTATTACTAGGCatataatttaaataaaattttttatttCC a score=58656 s hg19.chr6_ssto_hap7 2304366 1450 + 4928567 AAAAATAAACAACAAATGACTCAAATGAATGGGCATTTTGAGCTAGAGGAAGGAGAAAAGGGGGGAGTCCCTGGTGAGCAATTTACCTTGTGATTGATTCACATAGTTGTGCTGTGAGTATCTCATTACTCCCAGCAACTGGGGTGTGCAGGTAGAGTTTGGAAGCATCATTACCCAGCTTTCGTCATGGAATACACCTAC------------TCCTGTAATGTGACAAAGCCCCAGCCCACCAAGCATGCGTGACCCAAGCAAAAGTCCAGGAAGTGGACAGGGTTAAAGGGCTGCCCAT-CTAGACCT-GTGCCTTTGCACTGTGGATTTAGCAcaatgatcttcacgtggcatctgtgcccccacatcttgggcgtacataaagacttcctgaagagtattatgcaggcgtgggttgtttgatgggaaccattttcca-gatcttcaacttccgtatgtgcttgtggcctagaactgatctgtctgagggcacctctgtg-gtcagg---gctacacttttctgactcttctttgatgaacatccaacatttc-ctctgtagctcccatattattattaccacatttccgcagggtgtagaacatttcagggtgtcaaataaagccttttagtgaagggatacctcaaaaaccacctctaatttagggatcatatacccagagtaggacttcctgttttctcctgcctcatataaattcctgtgaagggctacgtggagtgtaaggaac-tggtaattttggcatgtgttaaggtgttatttacgcagatacactgtagaatgaagtaacaggagtaataaaaacttctttttttcctttcttttttttttaacaatctcttctcttccatccactctttaaaaatgcatccctcttgagggagtatctcatgagattggagcaagagcagaatcagca-gaaagaatagaggaggcagtggcttatttaaccaaggagaaaaatcccatggca-gccaacccaccttatctgtctgtctgcctattttagaatattcaagatttgtcaacaacttgctgggacaaagcaatgtgctatgaagcacacttccctgaattgtacaccattttctgtaaggggaaagagctacctgttcactagtttcttggtttaggtaacaattgtgtatttggcatgatttcaaggagaaagatgttgtaagctcc------------aactgattaatgttacaccttaagataaaagacacttagagaggccatacggcatgtcagctaagagcacagattgtggagctcgaatttctggtttcaaatccaatttcattgtgactttccacaaattccttaattcttctgggtctcagtttccatatttgtaaaca-tgagagtgaaaatagtacccacttcatggggttattgtgaagccttagaatagtcctgcatttcgtaagcg---------ctctgtaagttgtgttattttt s canFam2.chr12 3750251 1405 + 75515492 AAAGATAAACAACAAAT-----AAAGCAGTAGGCATTTCAGCACAGAGGAAAATGGAAAGGCAACAAAGTACAGTAAGCAATTTAGCTTATGATTAATTCACATGGTTAAGCTGT----ATCTCACTTCTCCCAGCAACTGGAGCATGCATGTAG--TTTGGAAGCATCATTACTTAACTTTCATCATGGAATACACTTACATGGACTACACATGTTTTAACTTGACAAAGCCACAGCTCACCAAGCATGTTTGATCCAAGTAGA-GTCTAAGAAGTGGAAAAAATTA--GTGCTGCCCCTTCCAGATCTCATGTTTTTGCCCTATTGATCTAACAcaatgatctttgaatggaatctct-cccatacat-ttggaggtacatgaagacttc-taaagaatattatgcacatattgaatattttacagaaatcattttttaagatcctcatctt-------------ttccctaaacctgatctgtctgagaatacctcagggtatcaggccagttagatttttctaactcccattttacaatcatccaccttttttctttctagctcccatattattatggt-gcatttctctggggtgcagaaaattctagggtg-caaatgaag-------gtgcaa--ataactcaaaa----tttctaatttaggcatcatgtacacaaagtagggcttcatgctttcccctaccacatgtaaaatcctgttagggactaaatggaatataacaaacctgggaatttcgatacgtgttaggatgttattcatttagatatattatagagtgag---agggaagtaataagaatttctgtttt-----------------aacagtctcttttcttgaatctcctgtcaaagaatgcatccctcttgagaaagtatctcatggaagcagagcaaagacagtatcagtatgaaataataaaggtggcagtcccttatttaacctaggc--aaaaccctatggcaagtcaacccaccttatctgtgcttctgcctattttaaaacattcaagatttacaaaaaatttgctaggaaacagcaa-attatgtgaagaacatctcccaggcttgtacatcattctctgtcaggggaaaaagcaccctgttcaccaatttcttg-cttaaatcatagctgtatattttgtatgatttcaaggaagaggatgtcacaagttccgtgtttacttccaaatgattcatgttattcctgaagatgaaagaaacaGAGAGAGGCTTtatagtatgtcatctaagaatacatattgtggaactagaatttctgatttttggtttgagctcagtgttaccttgcacaaattccttaactcttctgggtctcagtttgttcatctgtaaaaaatgatggtggta-tagtccccatttcatgaggatg--------------------CATGCATTTCAAGAGTGTATTAGTAGCACTACAAATTTTGTTATTTTT a score=7524 s hg19.chr6_ssto_hap7 2306135 167 + 4928567 tgttaggtaagttaatgattcatattttcttgaaaatatggaaagacgtatcataagagaagcatttttgcttaa--ttcaccaaaaagttactgggggctataaattgaacac---agagtcttacaaggcacaggaaattttttaga-cgtttataaacatatcttttgat s canFam2.chr12 3751659 173 + 75515492 tattgggtaggttaatgtttcatattttcttgaaaatatggaaaataattgcatcagaaaacctttttcatttacattccaccaaaggattattggggactgtgaaattTAAACTTTGGAGTCTTACACACCACAGGAAAATATTTAAAGTGTTTATCAACATATCTTCTGGT a score=33812 s hg19.chr6_ssto_hap7 2307015 860 + 4928567 aaaaaggataatgatgagtattgagatgctgctagtgtttagagtctact------ggaaacattttaaagagtagtaaaaacttttattatttcaatgtctacatttacaatatggtagaaattacattctttgcaataattaaatgtatgataaaaaatttagattaaacatagacagaggagggaaaa--cagcttttcaaaattgtttttgaacgtatacacaacagaaaatttgaagaTGGGCACTCAAGCACATAGGACATTTCTACACAAATGGTGGCTCCAGATAGCTGAAGAAGCTTAAGCAGCTGTAGGAGAGATCTCCA------AATCCAGGGACAGTGGCTGCCATCAGAGTGGTCCGTTTGTGGGAAAATGGGTCACAGACATAGACCATATCAGGCTATATTTCACAGAAAATC---TTCTTCTTTTTGTTACTTTCTGATGAACTATATGCTATATGGAA-GGTACCATTGAGACTCCTTGTGATGAAAATAACTCTACTTGAATTGGGGGTAAACTAAAATTAGAAGGGAAAGCAGACCCCTTGTCCAGCCAGGTTGAAGAAAATCTAAGCCGGTACAGGGTGAGGTTGAGAGAGATGGCAGCGAGAATCTGGAACACAGGCCTTTCCTAAATCAAACTTTCAGCACAGGTCATTCAAGGGCGAATTTCAAATCTATGCTA--TGTTTATAAATTGTGTACTCTACGTAATTGCCGGGTCCCTGGAATTCCCTACTCTGTGCGAAACTAATCTCTTACTCTCTAAAACAAACCCAAGTCCTAAGCCCACAACCCCTGTTTGCTCTTTCCTTCCTAGTCATCAGAACCCTCATGACTCAGACTCTCCAAGGAGGCATTTAAAAA s canFam2.chr12 3755821 818 + 75515492 aaaaagaatattggtgagtattgagaggctgc-agagttgagatgctactcagagctgaaacattttaaaaagtagtgaaa-------ctgtttcaatgtttatatttacaatatggtagaaattatattctttgtaattattaaat-tgtgatttaaacattaaattacacataagcagatgagggaatatacagtttttcaaaattctttttcaaagtat-ctgagtgaaaaacttgaagaccattgCTCAAGCACATAAAAACTTTCTACACAAACAGTGATTCAAGGTACTCGATGAAGTCTAAACAACCCTATGAAAGAGCTTCACTTGCAAATCCGAGGATAACTGCTGCCATCAGGG-GGCCAGTTTGTGGGAAGATGGGTCAGAGACATGGACCATCTAGGTCTGTATTTCACAAAAGATTGTGCTTCTCTTTATGTAATTTTCTGATAAGCAACATGTCATAGGAAAAGGCAGTTTTGTGACTCCTTATACAGACGAGAACTCTCCTGGAATCGAGGATTCA--------GAAAGAGAATGCAGACTC-TTGTCCAGCCAGTTTGGAGAAG---------GGCACAG--TGAGGTTGGGAGA-----CAGGGAG-----TGAACTCAGGAATTTCCTAAATAAAACTTACAGCACAAGAGA----AGGAAGGATTTCACATCTGTACTAGGTGTTTACAAATTGCCTATTTTACATAAGTGCTTGGTTA-TGAAATTCCTTACATTGTGA-----TGATGTCTTACTCTGCAAAACAGACAAAAGTTCTAAGCCTTCAGCCTCTGTATGTTCTTTCCTTCATAGTCCTCAGAACT-----------GACTCTCCAAAAGGCCACTCAAAAA a score=5395 s hg19.chr6_ssto_hap7 2308264 87 + 4928567 atttgtaaaatgaagacaatggtagtactgtgtctcagagtcgttgGATGCCAATGCAGGATCCCAGTGACCAGATGGAACGAGAGG s canFam2.chr12 3756740 87 + 75515492 ATTTATAAAATGGAGACAACAGTAGCACTGTGTATTAGGGTTGTTGGACACCAGCACAGGCTCCAACTGACCAGATGGGATAAGAGG a score=8231 s hg19.chr6_ssto_hap7 2308351 195 + 4928567 GAGCTCAGGAGAGACCAGCTTGAAGGGCCGAAGTCTTGTTCCCACATTGCCAGTAGGAGGCATAAATTCCCCCTCAGAGGACGTGCAGGAAAGAAGTGAAGGGGAGAGCCCTTGAAATGGGGGGAAAACAGTCCTGAGAGGGG-----CATTAAATTTCATAT-GGCCAAGTATTTACCCAAAAGAGACCTGAAACATTGt s canFam2.chr12 3757289 190 + 75515492 GAGCTCAAGAGAGACCTGCTTGAAGGACCTGAGTCCTTTCTCCACATGACCATTAGGAGATATGAATT-CCCCTCAGAGAACAAATGGGAAAGAAGTGGAGGGGAGACTCCTTGAAAT--GAGAAAAATAGCACTGGGGGTGGGGAGCCACTGCACATCATATGGGCTGAATATTAACCTAAAAGAGTC--------TTCT a score=1593 s hg19.chr6_ssto_hap7 2308844 65 + 4928567 AAAATTTTTTTCTTTCTTATTGTTTTTAATTCTCCCCccaagctta------ctgaggtaaaatagacaaa s canFam2.chr12 3757479 71 + 75515492 GAGAGTTTTTCttttttttttttttttaacttttaaattaaGGCTAACATATATGCAGTAAAATGTGCAAA a score=17281 s hg19.chr6_ssto_hap7 2310141 959 + 4928567 TTCTTCCTTCTTTCTTCTACAAAGGCCTCCTGCTTTGAAAATGAGGCATACCCAGGGAAAACAGGTTTCAGGTCAGCTCTGGTTCAAAGGGTGGGTCCCTTCCACTCCGACAAATTTGATCCCCTCATTCTGCCTCCCTCCCTGCCCCTCCTCATGTGTGCGCCCTCTGGTCTTGCCGACTCTGCTCTCTCCTCCGCCTTGATTCCTGTAGGGTACATCTCTCCAAACGGCCCTGC------------------------AGAAAGCACAGCG------CAGAAA-TGCCCCTCCCTGGGGAGGGAGGACCCA-AAGTTCTGGCCTCCCCTACTCAGTATCAGCTATAAATGCCACAGACACGTTTGCGAGGA-AAAAAGAAGA-AAAATA--------AGAAGCCAAACTGTGGAGCAATTTGGGGGCTCCCCCCAACCA-TGCCATCTGCCTACAAGGCTTACCCTGGCACTGGCTGGCCTTTGGGTCTTTTTGTGCAACTTTATTTTCTATCAAGGCCCAGGGGGTTTGCCCCTTGTCTCTCTGCCTCTTTGACCTATCCTTC-CTTTGGAACCCAGGCATCTAAATGACAACTTCTATGTGCATCATTTAGAGATGAGAAGAGGAAATATCTCTCCTGCTTTCTGGTTCCTGTGGCTGCTTCTCTTTGGACTTCTGGGACCCAGTAAGTGACTTAGCAGTTAAGGAGGGAGAGGGGCATGGAGGCCACATAAGCCCTGAAGGAGATGGGGAATCCCCTGC-CCAGGCA----------------TGACTCTTCTTCCAGAAACAATGATGATTCATTTTTTTTTTTTTTTTGCCCATTTCTGCAAAAGCCAGTACTGATCCCAATTCCACTGACCATGATTCTGATGCTA------TCTTAGAAGCAAATCTGTATTAGTCTCCCCCAGCTGTGGTTGTGAGCACATGTGGTGGGGCGGTGGGGCGGTGCTGGGGAAATGGAGTGGGGTGAGATTTTACTTTCCTTTGTATCTTGGATAAAA s canFam2.chr12 3759067 920 + 75515492 TTCTTCCTCCTT-------------CCTACTGCTCTAAAAATGAAACTTACCCAAGAAAACCATGATTCTGCTCCTCTCAGGCTCAGAGGACAGGTCTCCTCATATCTGAAATTTTTGCTGTCCCTGTTTTGCTTTCCTTCTTATCTCCTCCCGAAAGGAAG-----TGG----GCCAACTATCCTCTTTCTTCCCCTAACACCACCACA---TGCCTTCCTCCAAGCAAAACTGCACTCTCCCACCTCTCTCAGTCCTAAATAACCACATTGATCCCCCAAACATTGCTCCTTCAAAGGGAGAAGAAGCCCAGAAACACTGGCCTCCTTTACCTAGTAGCAGCTATAAACGCCACAGCTATACTCAGGTGGAGAAAAAGAAGACAGAATGTGGTTCCTAGGAGTCCAGCTCT--CCCAGCTCCTGGCTTTCCACCACCCACTGCTCTCCTCC--CAAGACTGGCTC-----CTGGCCAGCTTTCACCTCTAACCGAGAAACTTCATTTCCCATTGAGACCTGAAGCATCTGATCCTTAACTGTCCCCATCTGCAGCTCATTTTTTGCTTTGGGCCCCAGA-----AAAT-----CTCCCAGGTG-ATTATTTCAAGATAAGGAGAAGAAAGCGCTCTTCCATCTTCTGGTTCCTTTGACT--------------TCCTGGCATCTAGTAGCTGAATTACTGGTTTATCAAAAAGAACAATATGCAGACCACAGAAAGTCTAAAGGAGTTGGGG--TCCTGTGTATTAGGCATCATGTCCCCAAATTCTTATTCCTTTTCTAGAAGCAATGATGATTA---------CATTTTTTGCCCATTTCTATGAAATTCATTACTGGTTCC-ACTCTTCAGACCACAATACTGATACCACGTTTCTCTT-GAAGCAAATCCAT-TTCATCTCCCCCAG--------------ACAAGTGCTTGATCAGGGGGCAGAGACTGAG-------------------TCTCATCTCCCTGAGTATCCTGGATTGAA a score=1828 s hg19.chr6_ssto_hap7 2311119 74 + 4928567 AACTCTAGTTCCAATAGCATTCTTAATTCCAAATTAAAACCAGGATCTCAGTCTAAAG-----TCAAGTAAAAATCCTT s canFam2.chr12 3760416 77 + 75515492 GATCCTAGTTTTAAT-TCATCCTCAAGTCCAAATCAGTACAAGGCCCAC-GTCTAAAGGTAATGCAAGTGATGATATTT a score=1662 s hg19.chr6_ssto_hap7 2311880 56 + 4928567 CTTCTTCGGATGCTGCCTGATTCCAAATC-----CATGTATAATCCCCTGAGAACTTCCCT s canFam2.chr12 3760493 60 + 75515492 CCTCCACAAATGCTGTCTAATTTCAAATTGTTAGCCTTAATAAT-CCCTGAGGATGCCTCT a score=4494 s hg19.chr6_ssto_hap7 2319443 122 + 4928567 tTTTCTACTTTCTCTTCCCTTCCTGAATGATTAAGCCCCAGATCATTAGGTGAGGCAGAGCAAAGCAGATATCAGGGTTGGACAGGAGGGGAGACAGCAGTGGCCCAGAGAAGGATATAAGA s canFam2.chr36 26542757 121 - 33840356 TCTTCTTTTTTTTCTTCCCTTCCTGAATGATCAGTTCTGAAGCCATTAGAAGGGGCAGAACAAGACTGGTCTCTGTACTAG-CAGAGGAAGGAACGTCAGTGGCTCAGGACATGGCATTGGA a score=1638 s hg19.chr6_ssto_hap7 2325583 28 + 4928567 CCATCACAGGCTCTGAGAccaccatggc s canFam2.chr12 3728935 28 + 75515492 CCAGCACAGCCTCTGAGCCCTCCATGTC a score=662 s hg19.chr6_ssto_hap7 2325628 91 + 4928567 CTACGGCCTTAACTACAGGCTCTAAGATCACCACA------------------GACTCTACCACAGGCTCTGAGACAACCTCAGCCTCCACCATGGCTTCTACTGCAGC s canFam2.chr12 3728989 99 + 75515492 CCAAGACC---ACTGCAGCCCCAGGGGCCACCACACAGTGGGTCTCCATGACGGACTCCTCCGTAGGC-CTCAGAGCAACTCAGCCT--GTCAGG----CCATCGCTGT a score=7504 s hg19.chr6_ssto_hap7 2325719 395 + 4928567 CTTCACCACAGGCTCTGAGACCAACACGGCCTCCACCACAGACTCAGGGACTACTATA------GCCTCCACTAGGACCTTCACCACAGGCTCTGACACAACCACAGGCTCCACTGCAGGCTCTGAAACTATCGTGGCCTCCACCACAGTCTCTGGGACCACAACAACCTTTACTATAGCCTCCACTACAGTCCCTGAGACTACCATGGCCTCCAGCACAACCTCCACTGCAGGCTCTGAGAAAACGATGGCCTCCTCCATAATTTCTGAGACCACCATGGCCTCCACCACAGGCTCTGAGACTGCCACAGTCTCTACCACAGGCTCTGAGACCACCACCACCTCCACTGCAAGCTCTGAGGCCACTAAAGTCTCTACCACAGGCTCTGAAACCACCACAG s canFam2.chr12 3728963 340 + 75515492 CCTTATCACAGCTTCTAGGCACACAACCAAGACCACTGCAGCCCCAGGGGCCACCACACAGTGGGTCTCCATGACGGACTCCTCCGTAGGCCTCAGAGCAACT-------------CAGCCTGTCAGGCCATCGCTGTCTCCACCACAGCCTCTGTACCCAC------------TATGACCTCTAACGCAGCCCCCGATACCACTACCGTTTCCATTAAAACCCTTGTGACAAACACTAAG------------------------TCCGTGCCCTCCTTAGTCACCCCAATA---------ACTGCCAAG---CCCATCACAGGCTCTGAGAGCACCTCTTCCTCCATGATGACATATGTGCCCACCACAGTCTTCACTATGACCTCGGAAATCACCACAA a score=4310 s hg19.chr6_ssto_hap7 2326114 480 + 4928567 CATCT-ACTGCA-----------------GGTTCTGAGACCACCACTACCTCCACCTCCATGGCAGGCTCTGAGGCCACCACAACCTCAACTGCAGACTCCAAGGTGATCACGGCATCCAGCATGAGCTCTGAGACCACTGTGGCCCCCGCTGCAGGCTCTAACACCACCACAGCCTCTACCACAGGCTCTGAGACCACTACAATCCTGATTAAAGCCTCTGAGACCACCACAGCCTCTACAGCAGGTTCTGAGACCACCACCCCCTCCCCCACAGGCTCTCAGACCACCATAGTCTCTATTTCAGGTTCTGAGATCACCACCACCTCTACGGCAGGATCCGAGAACACCACAGTCTCTAGTGCAGGCTCTGGGACCACCACAGCTTCTATGGCAGGCTCTGAGAGCACCATCTCCACTGCAGGCTCTGAGACCACTACAGTCTCTATCACAGGCACTGAGACCACCATGGTCTCTGCCATGGGCTCAGAGACCACCA s canFam2.chr12 3729553 344 + 75515492 CCTCTGAATGCACTGTGCTCTTCATCATGGTCTCTGAGACTACCA-TACCATGTCTTCCATAATAATGCCTGGGCCCA-------------TGGATACCCT-----------------TAAAATAAGCTCTAAGACCACAA------------CAGCCTCTAATACCACCATGGCCTCCACTACCAATGCTGAGAACACGTTGGTTTCCATGGAAGCTTCTGAGAGCACTCTGGCCTCTACCACAGCCTCAGAGATGACTAGGGTCTTCACTAAAGCCTCT------------GTCACAGCTTCAGAGTCTGTGCCTCCCACAA---GTGTGGCAAGACCTG---------------------------CTGAAACCACTACAGCATCCAT---------------------------------------------------------------------GCCCACCACATTCTCTGCCATAGCCTCTGAAACTACCA a score=11727 s hg19.chr6_ssto_hap7 2326609 627 + 4928567 GCTCTGAGACCACCGTCACCTCTACTGCAGGCTCTGAGACCACCACAG----TCTCCACCGTGGGCTCTGAGACCACCACAGCCTATACTGCAGATTCTGAGACCACTGCAGCCTCTACCACAGGCTCTGAGATGACCACAGTCTTCACTGCAGGCTCGGAAACCATCACACCCTCTACTGCAGGCTCAGAGACCACCACAGTCTCTACTGCAGGCTCTGAGACCACTACAGTCTCCACCACAGGCTCTGAGACCACAACAGCCTCT-ACTGCACATTCTGAGACGACTGCAGCCTCCACCATGGGCTCTGAGACCACCAAAGTCTCAACTGCAGGCTCTGAGACCACAGTCTCCACTGCAGGCTCTGAGACCACTGCAGCCTCTACTGAAGATTCTGAAACCAACACAGCATTTACTGAAGATTCTAAGACTACCACAGCCTCTACTACAGGGTTTGAGACAACCGCAGCCTCTACTACAGGCTCTGAGCCTACCATGGCATCCACCATGGGCTCTGAGACCACTATGGCCTCTACCATAGGCCCTGAGACCACCAAGGTCTCCACTGCAAGCTCTGAGGTGACCACAGTCTTTGCTGCAGGCTCTGAGACAATCAGAGCCTCTACCGTAG s canFam2.chr12 3729303 495 + 75515492 GCCCTAGGGCCACCATAGATTCCACTGCAGCTTCAAATGCCACTGCAGAGTCTCTCCAGCATAGGCTCTGAGATCACCATGCCCTCCACATCAATATGTGTGCCCACAATGGCATCCTCCTTCACCTCTGAAATCTCCATAAACTT------------GGATGCCACCATAGCTTCTACTACAGCCCCTGAGATCATCCCACCTTCCACTACCATGTCTGTGTCAACCACTTTCTCCAACACTGCCTTTGAGATCACCTCAGCCTCTGAATGCAC-------------TGTGCTCTTCATCATGGTCTCTGAGACTACCA----------------------TACCATGTCTTCCATAATAATGCCTGGGCCCA-------------TGGATACCCTTAAAATAA-----------------GCTCTAAGACCACAACAGCCTCTAATACC------------ACCATGGCCTCCACTACCAATGCTGAGAACACGTTGGTTTCCATGGAAGCTTCTGAGAGCACTCTGGCCTCTACCACAGCCTCAGAGATGACTAGGGTCTTCACT------------------------------------------------AAAGCCTCTGTCACAG a score=6958 s hg19.chr6_ssto_hap7 2327236 324 + 4928567 GCTCTGAGACCACCACAGTCTCTACCACAGGCTCTGAGACCACCACAGCCTCCATCATGGGCTCTGAGACCAGCACAGATTCT---ACCACAGGCTCTGAGACCACCACAGCCTCTACTGAAGGCTCTGAGACCACCACAGCTTCCACTGAAGGCTCTGAGGCCACTACAGTCTCCACCACAGGCTCTGAGACCACTACAGTTTCTATCACAGACTCAGAGACCACCACCACCTGTACTGAAGGCTCTGAGATGACTG---------------------------------------------CAGTCTCCACCACAGTCTTTGAGACCACTACAGCCTCTACTGAAGGCTCTGAGATCACAATAGCCTCTA s canFam2.chr12 3730420 334 + 75515492 ACTTTGAGGCCTCTGGGGCCTCTACCAAGGTCTCTGAGACCACCATGGCCTCCACAATTATATGTGGGCCCATTACAGGCTCTAAGAACACAGTTTTTGAGATTACCATGGCCTCCACCACCACCACTGAGACCACTAAAGCATCAACTGATCTCTCTGACAACACCGTGGCCTCTACCATAGCCTCTGAGGCCCTGACAGTATC------------------------------CACTAAAATTTTTGTGATGCTTGGAGAGTTTGTGCTCTCCACAACAATTCCGTCTGCAGAGACCCTGACTGTCTCAACCAC--------AGAGCACCACACTTTCTGTCTCAGCATCTGGGCCCATCATATTTTCTT a score=4656 s hg19.chr6_ssto_hap7 2327560 314 + 4928567 CTTCAGACTCTGAGACCACCACAGCTTCTACTGAAGGTTCTGAGACCACTACAGTCACTACCGCAGGCTCTGAGACCAAAACAGCCTATACTACAGGCTCTGAGACCACCACAGCCTCTAATACAGGCTTGGAGACCACCACAGTCTTTACCATAGGCTCTGACACCACCACAGCCTCTACTGAAGGCTCTGAGACCACTGCAGTCTCTGCCACAGGCTCTGAGATGACCACAGTCTCTACTGAAGGCTCTGAGAACACTACAGTCTCCACCACAGGCTCTGAGACCACTACAGTTTCCACCACAGGCTTGGAG s canFam2.chr12 3729798 218 + 75515492 CTTCAGAGTCTGTGCCTCCCACAAGTGTGGCAAGACCTGCTGAAACCACTACAGCATCCAT------------------------------------------------------------------------GCCCACCACATTCTCTGCCATAGCCTCTGAAACTACCACAGCCTCT------------GAGACCAC------------CAAAGATTCTGACTTCACCATGGTCCCTCCCACCACCTTTAATACCACCAGATCCTCCACCATAGCATCTCCAGCCATGATAGTCTCTACTACATGCTAGTAG a score=442 s hg19.chr6_ssto_hap7 2327874 131 + 4928567 ACCACCACCACTTCCACTGAAGGCTCTGAGATGACTACAGTCTCCACCACAGGTGCTGAGACCACCACAGACTCTACTGAAGGCTCTGGGACCACTGCAGCCTCCACTGCAGGCTCTGAGACCACCACAGT s canFam2.chr12 3730261 88 + 75515492 ATAATTACT-CCTCCACCACAAGGTCCATTCTAACCACAGCCTTCAGCATAGCCTCTGAAATCAACATAAGTTCTTC------------------------------------------AACTATCCTAGT a score=4017 s hg19.chr6_ssto_hap7 2328005 150 + 4928567 CTCTACTGCAGATTCTGAGAACACCACAGCATCTACTGCAGATTCTGAGACCACCTCAGCCTCTACTACAGGCTCTGAGACCACCACAGCCTCTACTACAAGCTCTGAGACCACCACAGCCTCTACTGAAGGCTCTGAGACCACTACAGT s canFam2.chr12 3730016 118 + 75515492 CCCTACT--------------------------------AGCTTTTGAGTCCACTGTGGCCTTCAGCATAGTCTCTGAGACCACCACATCTTCCACAATAATATCTCTGCTCCCCATAGCTTCTACTACAGGTGCTAAGAACACAACAGT a score=3846 s hg19.chr6_ssto_hap7 2328155 339 + 4928567 CTCC---ACCACAGACTCTGAGACCACCATGGTCTCTACCACAGGCTCTGAGAGGACCATCACCTCTACTGAAGGCTCTGAGACCACTACAGTATCTGCCACAGGCTCTGAGACC---ACAGTCTCTACTGAAGGCTCTGGGAC-------------------------------------------------------------------CACTACAGTCTCCATCACAGGCTCTGAGACCACTAAAGTTTCTACCACAGGTTCAGAGACCACCACCACTTCTACTGAAGGCTCTGAGATTACTACAGCCTCCATCACAGGCTCTGAGACCACCACAGCCTCTACTGAAGGCTCCGAGACCACCACAGCCTCT---ACTGAAGGCTCCGAGACCACCTCAGCCTCTACTACAGG s canFam2.chr12 3730499 353 + 75515492 CTCTAAGAACACAGTTTTTGAGATTACCATGGCCTCCACCACCACCACTGAGACCACTAAAGCATCAACTGATCTCTCTGACAACACCGTGGCCTCTACCATAGCCTCTGAGGCCCTGACAGTATCCACTAAAATTTTTGTGATGCTTGGAGAGTTTGTGCTCTCCACAACAATTCCGTCTGCAGAGACCCTGACTGTCTCAACCACAGAGCACCACACTTTCTGTCTCAGCATCTGGGCCCATCATATTTTCTTCCACAGATTCTGGGG--------------------------------------------------------------ACCAAAACTTCCATATCACCTTCTGGACCCACCACAACATCTTTCGCTTTGGCCTCATCACCCACCCTAGTCTCTACTTCTGC a score=11668 s hg19.chr6_ssto_hap7 2328494 691 + 4928567 CTCTGAGACCACCACAGCCTCTACTACAAGCTCTGAGACCACCATGGCATCCATCATGGGCTCTGAGACCACTATGGCCTCTACCATAGGCTCTGAGACCACCAAGGTCTCCACTGCAAGCTCTAAAATGACCACAGTCTTCACTGAAAACTCTGAGACCACCATAGCCTCTACCACAGCCTCTGAGACCACCACAGTCTCCACTGCAGGCTCTGAGACCATCCCAGCCTCTACAGCAGGCTCTGAGACCACCACCACCACCTCTACTGAAGGCTCTGAGACCACTACAGCCTCTACTGAAGGCTCTGAGACCACCACAGCCTCTACTGAAAGCTCTGAGACCACTACAGCCACTACCATAGGCTCTGAGACCACCACAGCCTCTACTGAAGGCTCTGAGACTACCACCACCTCTACTGAAGGCTCTGAGACCACCACAGCCTCTACTGAAGGCTCTGAGATCACTACAGTTTCTACCACAGGCTCTGAGACCACCACAGCCTCTACTGAAGGCTCTGAGACCACCACAGCCTCTACTGAAGGCTCTGAGCTCACTACAGTTTCTACCACAGGCTCTGAGACCATCACAGTCTCTGCTGAAGGCTCTGAGACCACTACAGTCACTACTATGGGCTCTGAGACCACCACGGCCTCTACTGCAGGCTCAGAGA-----------CCACCACAGTCTCTACTGCA s canFam2.chr12 3730134 549 + 75515492 CTCTGAGACCACCATGGTCTCCATCATTACTTCTGAGACCACTCTGGGTTCTTCCATAACATCTATGCCCATCATACTTATCACCACAGACTCTGAGACCACCAGTGCTCCCAGCACAGCTTTCAAGATAATTAC-TCCTCCACCACAAGGTCCATTCTAACCACAGCCTTCAGCATAGCCTCTGAAATCAACA------------TAAGTTCTTCAACTATCCTAGTCTCTCAAACAACTTCAGAGGCCCTCAGGTGCAGCATTACAGCA---TCCATGCCAATGACAGCCTCTATCCCAGACTTTGAGGCCTCTGGGGCCTCTACCAAGGTCTCTGAGACCACCATGGCCTCCACAATTATATGTGGGCCCATTACAGGCTCTAAGAA---------------------------------------------------------------------------------------CACAGTTTTTGAGATTACCATGGCCTCCACCACCACCACTGAGACCACTAAAGCATCAACTGATCTCTCTGACAACACCGTGGCCTCTACCATAGCCTCTGAGGCCCTGACAGTATCCACTAAAATTTTTGTGAT--------------------------------------------------GCTTGGAGAGTTTGTGCTCTCCACAACAATTCCGTCTGCA a score=4059 s hg19.chr6_ssto_hap7 2329191 138 + 4928567 GAGACCACCACAGCCTCTATTGAAGGCTCTGAGACCACTACAGTCTCCTCCACAGGCTCTGAGACCACCACAGTCTCTACCACAGGCACTGAGACTACCATCACCTCTACTGAAGGTTCAGAGACCACTACAGTCACT s canFam2.chr12 3730138 132 + 75515492 GAGACCACCATGGTCTCCATCATTACTTCTGAGACCACTCTGGGTTCTTCCATAACATCTATGCCCATCATACTTATCACCACAGACTCTGAGACCACCAGTGCTCCCAGCACAGCTTTCAAG------ATAATTACT a score=5567 s hg19.chr6_ssto_hap7 2329431 252 + 4928567 GAGACCACCACAGCCTCTACCGCAGATTTGGAGACCACCACAGTCTCCACCTCAGGCTCTGGGACCACCACAGCCTCTACCGCAGGCTCT-GAGACCACAACAGTCTATATCACAGGCTCTAAGACTACCACCGCCTCT---ACTGAAGGCTCTGAGGCCACTACAGTTTCTACCACTAGCTCTGAGACCACCACAGCCTCTACCACAGGCTCTGAGATGACTACAGTCTTTACCACAGTCTCTGAGACCACCACA s canFam2.chr12 3730683 224 + 75515492 GAGACCCTGACTGTCTCAACCACAGAG--------CACCACACTTTCTGTCTCAGCATCTGGGCCCATCATATTTTCTTCCACAGATTCTGGGGACCAAAAC-TTCCATATCACC--TTCTGGACCCACCACAACATCTTTCGCTTTGGCCTCATCACCCACCCTAGTCTCTACTTCTGCCTCTGGGGTCCCCACAGTCT---------------------CCACAGTCCCCACCAGTGTCTCTGAACCTTTCACA a score=6514 s hg19.chr6_ssto_hap7 2329683 283 + 4928567 GTCT------CTACCATAGGCTCT------------GAGGCCACCACATCCTCTGCTGCAGGCTCTGAGGCCACCACCACCTCTACTGAAGGCTCTGAGACCACCACAGCCTCCACTGCAGGCTCTGAGACCACCACAGCCTCCACTGCAGGCTCTGAGACCACCACAGCCTCC---ACTTCAGGCTCTGAGACCAACACAGCCTGTACCACAGGTTCTGAGACCTCCACACCCTCCAGTGCAGGCTCTGAGACCAACACTGCCTTCATCATAGGCTCTGAGACCACCATAGCTTCCACTGCAA s canFam2.chr12 3730329 304 + 75515492 AGTTCTTCAACTATCCTAGTCTCTCAAACAACTTCAGAGGCCCTCAGGTGCAGCATTACAGCATCCATGCCAATGACAGCCTCTATCCCAGACTTTGAGGCCTCTGGGGCCTCTACCAAGGTCTCTGAGACCACCATGGCCTCCACAATTATATGTGGGCCCATTACAGGCTCTAAGAACACAGTTTTTGAGATTACCATGGCCTCCACCACCACCACTGAGACCACTAAAGCATCAACTGATCTCTCTGACAACACCGTGGCCTCTACCATAGCCTCTGAGGCCCTGACAGTATCCACTAAAA a score=2096 s hg19.chr6_ssto_hap7 2329966 89 + 4928567 GCTTGGAGCCCACTGCAACTTCCCTCACAGGCTCTGAGACCACCACAGTCTCTATCACAGCTTCTGGGGCCACTGCAGCCTC---------------------CACCACT s canFam2.chr12 3730420 110 + 75515492 ACTTTGAGGCCTCTGGGGCCTCTACCAAGGTCTCTGAGACCACCATGGCCTCCACAATTATATGTGGGCCCATTACAGGCTCTAAGAACACAGTTTTTGAGATTACCATG a score=10743 s hg19.chr6_ssto_hap7 2330055 188 + 4928567 GTCTCTTCCACCACGTTTGTACTCACCAAGGCCACTGACGTTTCTATCCAGCCCATCACCAACACACCTATGTCAGGTACTAACCCCCATGTCTTCTTTGAGCCCACACATTTTAACTCCAGTGGCAACCACCAGCTGTTCACCTGTTTCTATCATCTCTGCCCTGG-TTCAAGTCAAGCCAGCACACA s canFam2.chr12 3730907 188 + 75515492 GACTCTTCCATCACCTCAGTGCTCACCAAAGCCATTGACTTTTCTATTCAGTCCATCACCAACACAGCTATATCAGGTACTGACCACCATCTCTTCTCTAAGCACACACATTT-ACCTCCAGTGTTAACCATCATCTTTTTGCCCGTTTCTGTCATTTCTGCTCTAGACTCTAGTCAAGCTACCACTCC a score=15422 s hg19.chr6_ssto_hap7 2330566 758 + 4928567 TGTCCTCTTCTGGAATCCTAATTGCCTCTACTCTGGTCTCACCTCTTTTTTTTTAAGTGCCCACCACTTCCATTGCAATCAGAACCACAATATAGTAAACC------------------------------------------------------ACAAGTGCATCATAT-CTGTCACA--------------------TCTT-------CCTCCAGCAAGCCCGCCTCAACTCTACTGGCC--CATCACAGTTTTGTGAAATGCTCCCACTTCGGTGCCAAGTA-GATTATCTCTATTCAACCAACCATCTGTGACACTGCCACCTCCTAT-CAATGTATTGA-CTCTAGACcagaggctggcagaccacatttcatgggtcaagtctcacctgttacctggttttgtaaa----gttttactggaacatagtcatgcccattcatttatggtttgtctccagctgcttttctgcttttccgtgtatttgcaacagagacagcctggcccaaaagcctaaattatttgctgtttgg---acctttacagaaaaaatttggcaacctttgCTCCA-----GTCTGAGACCAAACAATTTTGTTCATTCTCTGGCACTTGC---------------------------CATCAGCAAGCCGGTTACATCTGATTCTATCCTCTTGGTTCTAAGCATACTCACTTCTATTCTCATGACTGGTGCTGTTTGTGATCCCATTTTAACCACTTCTGACCTAGGCACACCCATCGCTACCTAAGCCGCCACCACCGCCTCTGCTGTGTTGATTCGTGCTCACACCTGTCTGAGCCCACCCTCTCCTATCCCTGTGAGCAGCCTTCTCCACTTGGGTCAGGTCCTCCTACA s canFam2.chr12 3731105 791 + 75515492 CTCCCTCTTCTTGAATCCTATTCATTTCTACTCTG-TCTCACCTTCTTTTGTTCA----TCGTCCATTTCTAACCCAACCAGAAACACTTCTTTGCAAGTATCCCCCCTacactcacacacacacacacacacacacacacacacacacacacagacaAGCTCATTATATTCCATCACAGAAGTGATGAATGCCTAGGTTCTAGGCAGAACCTAGAGGGAACTCACCTCAACTCTG-TGACAAACATCCCAATTT-GTCAGATGCTGTCACTTCTGTGCCAAGCACAATCAGCTCTGTTCCATCCACCACCTGTGACACTGCCATCTCATCTTCAATATATTGAGCCCTGATCCAgggactg-caaactacacttcatgggccaaatctggc-tgttatctgttttcccaaatgagatgttattggaacacagccacttgtactcctttacg-----tctatagctgctttccagctactttgcatacttgtgacagagactttgtgacccaaacaacttaaaaatttgccatatgatgaccctttacagaaggtgtttgccaacctttgCTCCAAGGTTGATTAAGACCAAAATTATTTTTTCATACTCTGGCACTTGCTCTGAATAAAAGCACCTCTGTGCTTGCCATCCGTACTCATGTTGGATGTGACTCTA-CCACTTTGTTCTGAG-ATACCCACTGCTGTTCCGGTGACTGACA-TGTTCTTG-CATCAACACAACCACTTCCAGTCTAAGCACAGCCCTTGCTGCTGATGCCACC-----------TGCTGTATGTATT----------------------------------------------------------------AGGTCCTCCTGTa a score=6686 s hg19.chr6_ssto_hap7 2331336 188 + 4928567 CACTCACCTCACCTTTGCTGATCACCACAGTGTGGTAGATGATGTCACCTCTG-TCCCAGCCACGGCCACTGGCATGCCCATGAGTGAATCCAATTCTACCATCTCCTCCTCCAGCTCCCTCCTTACACCCAGTGATCACAGTCACAAAAGAAGCAGGGCCTGCCGCTTTGTATACCAGCCCACCCACT s canFam2.chr12 3733945 180 + 75515492 CACTCACCTCACCTTTGTTGACAACCACGATT------GTGGTGTCAGCTGTGCTCCCAGTGATGGCCCCTGTCTCATCC-TGAGTAAATCTGAGTCCATCATTCCTTCCTCTAGCAACATCCTTATGCCCAGAGAGTACA-TCACAAGAATATCAGACCCTCTCCCTTT-TATCCCAGCCCACACTCT a score=29419 s hg19.chr6_ssto_hap7 2331904 741 + 4928567 CTATTTGGGTGGCCACTTCTGAAGTCAAATAGATCTTCCACTTCTGAACCCATCGCGATAACGTTTCCTCAAACTTCTGCCTCCTCCATCACCAACTCCA------------------CCAGGTGACACATTCTACCTCCTTCTCTGTATGACACCCACCTGCATTCTGGGGAC---ATGGCCACAGCAGAATCGCTTTCTACCATCTCTCCTCCCCCACCACACCTCTCCT-GAGCCACCTCCACCATAGGTTTGTTAGATTCACCCTCCTCTGGTCTAAGCACCCCCATTCCCCTTTAATCATCTCTGCTACAAATGCATCATCTTGTGTGACCTGTTTCATAGGCACCAGAACCACTGGAACCAGACTCACTGCCTCCAGCTCTGTCACCATGGCCCCTGGAATGGACTTCACGGCCTCTGCTGCCAGCCATACTGTGCCAGGAATAGTCTTAAACACCTCTGGCCTGGGTACATCCACTATGGGAGCATCATCTACCACCTCAGCCCACGGCGTCAGGACCACCA---CAGGATCCACCCGTGAGCCAACCA---------------GCAGCACCTTCCAGGAAACAGGCCCGGTGTCCATGGGCACAAACACAGTTAGCATGAGCCACACACCCACAAACGTGATCAAACCAAGTGGATATTTACAGCCCTGGGCTATCATCCTCATTTCCCTGGCTGCAGTTGTGGCTGCTGTTGGATTGTCAGTAGGACTGAGTTTTTGTCTGGTGAG-TACCCAGGGTGGGTTCATAGGGGAGC s canFam2.chr12 3734125 745 + 75515492 CTATTTGGATG----------------------------ATTGCTGCATCAATCCCAGTCACATTTCCTCAG-TTTTAGCCTCcaccatcaccagcaccattaccatcaccagcaccaccaGTGGACATAGTATACCTCCTCTTCTGTAAGACACTCACCTCTACTCTGGGGACCTCATGGCTTCAGGTGAACCACTTTCTACCATCTCTTCTCCCACCATGCAGCTCTTCTCAAACAACCAACATGATTAGTGTGTTAGATCAACCCT--TCTGCTCTCAGTACACCTGCCTCCTTTTAATTATTGTCAGTATAAATGCATCATATCATGTGACTTGCTTCCTAGGCACCAGGACCACTGGAACGAGACCAACTGCC-CCATCTCTGTCACCATGGCCCCTGCAATGGACTCCATGTCCCCTGCTACCAGGAATATTGTACTTGAGGAAGCCC-AGATACCTCTGAC-TGGGTACATCCACTGTTG-AGCACCATCTATCAGCTCTGTTCCAGGTACCAGGAACACCAGGATGAGATCTACCCAGGAGCCAACCACCACTCCTGGAAGCAACACCACTTCGCATAAAATAGGCCCACTCACCACGGGCACGGACCCAGTTACTATGAGCCAAATGCCAACACATGGGACTAAGCCAAACGGATATTTGCAGCCCTGGGACAGCGTCCTCATCTCTCTATTTGATGTTGTGGTAGGTGTTGGACCATTATCAGGACTGAGCTTTTGGCTGGTGAGTTACCATGGGTGGGG--ATGGAGGAAC a score=22331 s hg19.chr6_ssto_hap7 2334323 989 + 4928567 TTCTTAGCTGACTAACAAAGAGAAAGACTGTCTGTAAA-GTGAGTCTCTGTGCCTTTCACATAGGGGTATGGATTTACCTTTGTCTTGGAAGTCCAAAAACACATAACCTTATGATC-TGCAGAGCTAGGGCCTGAGTACGCACATAAAGATGATATGTTAATAAGGTAACAAGGAAGCTTATTTTGTCAGACGGAGAAAGAGTAAAAGAACAAGGAAAAAGAGAGACAGAGACAGAGATCATAGTAAGGATGGTGGTAAAGAGAAGAGAACATGGGCAGTTTGGAAAAGTGAAAATCTGACATTGGTGAAA---CAGGCATGTATGGTGATTAGGGAGAGGAGACTTAATTTTCATTTATCAATGTATTTATTTTTTTCTTTTAGAGAGACCTTTTCTTCCCCCTGAGATATTGTGGTATTTATTACCCCCATGGCCACAGCCACAGCCTTGGTCTGGACCTGAACTTGGGCCTGGGCTCTGGGACATTCCACAGCCTGGGAAATGCACTGGTTCATGGAGGAGAACTTGAAATGGGACATGGAGGAACACACGGCTTTGGATATGGAGTGGGCCATGG------------ACTGAGCCACATCCATGGAGATGGCTACGGAGTGAATCATGGCGGGCATTATGGACATGGAGGAGGCCACTGAGGACACCATGGAGTGGATCACAGAGGGAGCCACCAAGGAGGCCACGGCAGGACAAGATGGCTGTGGCCATAGATTGGGTATCAAAACATATTAT----------------GGGTGGGAGGGGGTCATGGAGGAGAAAAAAATAATGATCATGAAAT-AATTAAAATGGAGCATAGGAAGCTTCCCAGGATGTGATCCATGGAGATGGACATGGACTAGGTCAAGAAAAGAACCAGCAAAAGGACCTCAGAGACTTTGACT------------------------------------------------------------GGCTTGGAGGGGACTTCAAGTCAAAGC-TTCTGTGAGTTTTTCCTGAGTCTC-AGCCTCTGTTGTGGGGAGTCACGACAACCACCCTCAGGACATCTTCT s canFam2.chr12 3738169 1020 + 75515492 TTTTTAGTTGAATAGCACAACAAAAGACTCCCTATTTCTGGGAGACTCTACTTCTTAGGTACAGGA-TATGGATTTACCCTTGTCTCGAAAGTTTAGTGGCATATAATCATACCACGGTACAGAGA-AAGATCACAATTTTCATATACAGA--ATATATAAGCACAATAACTAGAAGGCTGTTTTC-----ACAGAGAA---GTAAATAAATAAATAATAAGAAAACCAGTAATATCACACCTACCAAAAAAAAGGATAAA---AACGGAAAATAGACAATATTGAAAAGTGAAAATTTGTGATTTTTCACAATTTAAGAGGGTTTAATGATCTGGAATGGAAAG---AAGTTAACTCTAGTAATATATGT-TTTTTATCTTTTAGAAGGACTTTTCTTTTCCTCTGATAAATAGAGGCATTTGTAACCTCCATGACCACAGAATTGACCTTGGTCCAGACCCGGACTCAGCACTGGGCTCTGGGATGTTCAACGGTCTGGAAAATAAACTGGTTCATGGAGGAG--------------------------CACATCTTTGGACATGAAGTGGGCCATGGTATGGACTGTGAATTGAGCCACAGCCATAAGAGTGGTTATGTCATGAATCATGAGGGGAGTCATGGACATGGAAGAAGCCATAACAAGAGCCATGAAATGGATCAAAGAGGAGGTTGTCAAGGAAGTCATGG-AGGATAAGGAGAGTATAGACAAAGACTGAACAATGGAAGATATTCTAGAAAAGAAAATATTGGGGAAGAAGGGAATCATGGAGGAG---AAGGCAGTGACCATAAAATGGATCAGGATGAACTTCCAAAAGGATTTCAGGGGATTGGCCTTAAAGATAGTCATGCTC-AAGCCAAGAAAA----TAGAGAAAAGATCACTAAGAGTTTGACTAACAGGCCAGCCGGGGGGGGGGGAGGGGGGAGATTCTACAGGAGACTTGCAGATTTATCAGGTTTAGATGTGAGCTCAAGTAAAAATATTCCCTGAGCTTAACCATAGTTGAGAACCTCT----TAGGAAGCCACAA-------TCTCAGAATGGTTTCT a score=4089 s hg19.chr6_ssto_hap7 2335343 203 + 4928567 TTCTCATCCCTGTGTTTCCTCATGGTG---------CTATAAATATTACCAAGACATGTCTA-----AGAAACAAAAGCACATAATGAATGTATTATCAGGGCCACACACGTATTCGTTTTCCTGTTTGTTCTTTCAGGTTTTGTTTTTTTTTTTttttttgagtgcttattatgtaccaatcactatcccaggagcctttaaatacgtcatcattt s canFam2.chr12 3739230 216 + 75515492 TTTCTACTCTTTCGTTTCCTCAGGATGTCCCGTGACCAATAAGAAAAATAAAAGAATTATTACAGCTGAAAAAAATACCTCGTAATATTTGTGGTAGCCAGATCACTTGCTTATTTGTTTATCCATGTGGACATTCC-TTTCTCTTTTTTCCTTTGttattgagtgattagtatgtgctaagcattgtactaagggactttcaatgcactatcATGT a score=726 s hg19.chr6_ssto_hap7 2335848 35 + 4928567 atcatt----------taatcctcagaaaatatcttggtgacctt s canFam2.chr12 3739446 45 + 75515492 ATGATTGTAAAATTGGTAATCTTAAAATAATCTTTTGAAAACTTT a score=2477 s hg19.chr6_ssto_hap7 2341878 139 + 4928567 CTGGAGATCGGAGATGAAAACTAGGAAGAGAAAGCAGACGACCTGTCTAGACGTCTGAAAGCGATCTGAATTAGGACATGCTAAAATTAAAGGACAGGGCAGAGAGAATCTGGAGTTCAGGCAATTCCTAAATAGGACT s canFam2.chr12 3756324 112 + 75515492 CTGGA-ATCGAGGAT-----TCAGAAAGAGAATGCAGACT-CTTGTCCAGCCA----------GTTTGGAGAAGGGCACAGTGAGGTTGGGAGACAGGG---AGTGAAC-------TCAGGAATTTCCTAAATAAAACT a score=5022 s hg19.chr6_ssto_hap7 2342060 199 + 4928567 ACAATTCCAAAATTACTCTGTGTCTTTGTGATTTTTCTGTTTGTATGCAACTGTTTGCATCCTAACATTTCTAATACTGAGGTAAATTAATCTGTCATTCTCTAAACAAGACAGAAGTTCTAAGCTCTTAGCCTCTGCATCCT-GTCCCTTCACGGTTGTCAGCACTGACCCTCCAAACATGTATCAAAATACGATCTCT s canFam2.chr12 3756454 193 + 75515492 AGGATTTCACATCTGTACTAGGTGTTTACAAATTGCCTATTT-TACATAAGTGCTTG-GTTATGAAATTCCTTACATTGTGATGA-----TGTCTTACTCTGCAAAACAGACAAAAGTTCTAAGCCTTCAGCCTCTGTATGTTCTTTCCTTCATAGTCCTCAGAACTGACTCTCCAAAAGGCCACTCAAAAATGACCTCT a score=13518 s hg19.chr6_ssto_hap7 2344027 390 + 4928567 aAAACTCTCATGGAGTCTAGCCCCAGGTTTTTT-TCATGACCTGCGAATGAAGGAACTGG-AAGCCAATTACCCCGTTCCCATCTTTGTTTTCTGCCGCTCCTTCAGTTGTCTTTGGGCTCTCTCTGTTGGCCTCAGCCA-GAGTTGAAGCAAGCTTGGACTGTAAGCTCTCAGTCCCCAGGCAAACTGACAGTGTCC----------------AAAGTGTAGGTACTTCCTTGATCATCTCGCTTGTCTGGCACACAGCACTGATGAGAAGACCTAGCTGAAGCTCCCC--GGTGGAAAAGCTTCTATAAATTCTTCAAAAACAAAAGGGGAGCGCCTCTATCAAGGAGGATTAGAAGCAGGAGCATTCCTCTTTCCAG-TGCCATCACTCTCCTTAGGTCCCCTGcagcg s canFam2.chr12 3765951 403 + 75515492 AAAATTTCCATAGGGTCTACTCCCAATTTGTTTGCCATGAACTGTGGATGAAGTAAGTATCAATCCCCTTAGCTCACTACTGTCTTTGTTTTGTTCTCCTTGTTCAGCTGTCTTTGTGTCATTTCTGTTGGCCTCATCCAAGTGTCTAAACGAAATTGTACCACAAGGTCTCAGTTCTCCAGCATATTGGCAGTGTTTTCCTTTTTTTTTTTTGGCAGTGT-----TTTCCTTGATCATTCAGGTTATCCAGCATATAGCATTGATGGGAAGAAGCAGCTGAAGTTCACTAGGGTGTAAAAGTTCCTATGAGCTCTTCAAAAATAGGGGAGGAA-ATCCCTATGAAGG-GGGTTGGAAACAAGAACATTCTTC--TCCAGTTGTCATTACCCCCTGTAAGTCCTATCCAGTG a score=24300 s hg19.chr6_ssto_hap7 2344786 575 + 4928567 GTTCCATCTCCTCAACAGCTCACACCACCACCCCCAACTCTCCCACCC-CCAGCTCCCACGCTGCGGAGACCCCAGAGTCTATTTCCCTCCCCCGGGTCTCTCTTCCCCACCTCATTCAAGGTATGCTTTGCAGGCTTACTAATTATTCAGCAATGCCCAGAGGTCCAGTCTCCAGTGCCTATTCACA-GGGATCTCACTTCCTGTG--CCCTACCTGCTAAGCTCTGTTTGCAGGGGCTTCCTTCTCACACAC----CTGCTCCTGCCCAGCTATACTGGGTTCTCAGGACTTCTTGTCCAGGAAAGGAGGCCTCCAACTAGAGCAGGTTTTCTGCCCCATCCCTGCCTCAGAGGGTGGAGCCCCTCCACTTTGACAGCCTTGATCCCCTTGAACTATTCCACTTCCCACTCCTCCCCAGGCCCTTCCTAATGGGACTAAGTCATCCTCCACCCTCACCTACCTTCTGGCTGCTG-----TACCCTCCTCTCTAAACTTGGGGATTCTGCCACTGCTCACAGCTGGAAGAACAACAGCCTACATGTCCAGGCCTTGCCCAGTCCAGATGATGCTTTAAAGGCCTTCT s canFam2.chr12 3766717 549 + 75515492 GTCTCATCTCCCCAGCAGCCCACA------------GCCCTTCCACCCACTACCTCCCTTGCCCCAGACTTTCCA-AGTCTAT-------CCTTGAGTCTCTCATCCCC-CGGGATTCAATGAAT--TTTACATGCCTACTATAGGCTCAGCAGCTCTCAGAGGTCCAGTCCCTAGTTTCCATTCACACTAAATCTCACTTTATGTGTCCCCTTCCTGCTAAGTGCTGTTCATGAAGGCTTCCTTCTAACAGCCGGCCTCACTTTTACCCAGCCA---------CTCAGGACTTCTCATCCAGGCAATAAGATCTTGAATTAGGATAGGTTTTCAGCCCCATCTCTGCCTCAGAGGGTGGGTCCCCTCCACTTTGACTAC-TTGATCCTCTTGAACTGTCCTACTTCCTGCTCTTCCCCAGGCCCTGCCTAATGGGATCATGTCATTCTCCACTTTTTTGTACCTCCTGACCTCTGCTTTGTACCCTCCTTTCTGAGTTCAAGTATTCTGCC------TACAGCTGGAAAAACAACAAGCCACATACCCTGCCCTTGCCCAGCCCAGATGATACTATAAAGACTTTCT a score=38670 s hg19.chr6_ssto_hap7 2345700 787 + 4928567 AAGAGGTGGCATTCTGTGAAGGAACATCAAGGACCAGACATCCAGCTTC-CCCTGTAGCCCAGGTCCCCCTAGCGGTGCTTCTCTTCAGATTGAGGACCTATTCTTTGGAGTTCCGAATTCCTAGTAGTCCAGCCCTCAGATCTCCACCTTGAGACTCCACCCTCAAGATTCTCA-----------TTTTCTGCCTTTCCCTTCTAAGGCTTAATCCCATC-GGGACTAAGGGAGGAGCCTTCCCTTCCAGCCTCACACAGGCAGACTATCTCAAAAGAAAGAGAAAGCAATTTTCCCTTGCATGCTGGCTGTT---TCACTTCCTTCTACTTTTAGGAAATGGTGAGTGATTTTGTTTAAAAGAGAATAATCTTGGAGTTTGAGTAGAGTTTGGGGAAAATGTTGACAACTTCTGGGACACACACTCTGTCCTTGTTGCCCCCATTCTCTTCAAGGCAGGAGGGATGATTATTTTGCTTCTTTCTCTCCAATGCAACCCAGCATCTGTCCTCCGTTCTGTTCTCAGTGGCAACTCTTCTGCCCAGAAGATGGACCTATTTACTCTATAATACATCATTCCCAGATATAGGCGCAttagagttggaagagaacttgaa-ttagtgtctgaccacctgtaataggcagggatctatttccagcgtctctgacagcagtcatctagcctctaattaaacacttcatgagacattgctgttccacactcacgcagatttaattctctctagaatctgccccagcgtggctttgactcttgtgttttatgcccctgaccaacacaaaa s canFam2.chr12 3767530 777 + 75515492 AAGAGGCAACATTCTATGGAGGAA-----ACCACCAG-----CAACTCCACTCTGCAACCCAGGTCCTCCTTCCTGTGGTTTTCTTCAGATTAAGGACCCATTCTTTGGAGACTCAAAGTCCCAGCACTCCAGCC-TCAGATCTTCACCTTT--------CTCTCAAGATCCTCCATTGTTTTGTTTTTTTCCCCTTTTCCTTCTAGGTCTTAGTTATATCTGGGACT----TGAGAGCCCTCCTCTCTAGGCTT-CACAGGCAGATTATCTCAAGATGAAGGAAAAGTA--TTTTCCTTGCATGCTGGCTGTTGTTTCACCTTCTTCTACTTTTAGGAAATGGTGAGTGATTTTGTTTAAAAAAGGATATTCTTGGAGTTTGAATAGAATTTGGGGAGAATTTTGACAACTCTTGAGATGCACACTTTGTCTTGTTAGTTCCCATTTTCCAAAAAGGGGTAAAGGCCATTATTTTGCTCTATTCTCTCCAATTCAACTCAACATTTATTCTCTATTCTTTTCCCAGTAGCAGCTCTTCTGCACAGAAGCCTGGCCTATTTCCTCTGTCACAAGTTAATCTCAAATGGAGATACAttagagttggcagagatcttcaagttaatatctgaccactcacagtaggcagggatccatctccaatatctatgacagcagttgccaagcctctaaatgaatatgtcagga-ataatgctgttccacacttgcatagctctaattttttctagaatttgctccaccatagctttggctcatttgttttatgcctttgaataacacaaaa a score=4584 s hg19.chr6_ssto_hap7 2346490 63 + 4928567 gtctattccctctccacaggccagcttttcaTCTCAACTTCTCACTTAGTTTCTCTCTTGGCT s canFam2.chr12 3768519 63 + 75515492 ATCTATTCTCTCTCCACAAGCCAGATTTGCATCTCAATGTCTCACTTAGTTTCTCTCTTAACT a score=607 s hg19.chr6_ssto_hap7 2346553 163 + 4928567 CTGACCCTAACC------TAAGGCAT-----CGACACACAGTTTTGGGATTCTTCCC----TCAAATCTAAATTGGCAATCCTTATGTTAGTCCAGACAACACCAAGGCAAGAA--CATATGTGGAGGGTGAAGGG--CAGCACCTACA-TCCAGGGAGAG---AACAGGGCCATCGATGAGGAGA s canFam2.chr12 3744989 177 + 75515492 CGGATCTTAACCCCAATTTATAGCATGTTGCTGATACA-------GGGGGCCTTCCCAAAATAGAGCCCAAACT--CTAATCCAATGTTAGTTCAATTAAGCCTGAGGAGAAAATTCACATGTGTGGAATGAAGTGATAGGCACCAATGTTCCAGTTAGTGGTAAAATGAGCCACTAATTAATTTT a score=7554 s hg19.chr6_ssto_hap7 2346716 241 + 4928567 GGGTCTATAGGGATCTGGGAGGTCAAGGGCTTGGTTGTTAATGGGATGGAAAATCAGAACAGGGTAGAAAATAGGCAT--GACAGGGAAAGAA-GCTCAGTCTCACCTTAACTCTAACTGATCCAACAAGAAAGCTGAGCCACTTTCCTGAATCCCAGAAGATCTTATTTCTTCAAGCTG-ACATGACTGATTCTTTACTAGTCCATGTGTCAAGACCATCTGGGGTCCCTTAAACCAGTGGCTC s canFam2.chr12 3768582 230 + 75515492 GGACATATAGGCATATGGGAGACCAA-------GTTGTTATTGGGATGGAAAATAAGA----GATAG-AGGTAGGCATGAGATAGGGGGGGAATGCATGGCCTCATACTGACTTTAACTCACTAACCAAGGAGGTTTAGTCCCTTTC--GCATCCTAGGATATCTTATCTATTTGAGCTACACGTGGCTAGTTCTTTGCTAGACTAAGTACTAAGTACATTTGGGAACCCTT-AATGGGTGGGTC a score=12863 s hg19.chr6_ssto_hap7 2347263 322 + 4928567 CCAAACTTTTGTGTTCAGAAGAATTACCCGAT-GTAGTAAAAATGCACATCATGGTCCCCTCCCAAACCGATTCCCCTTGATTATCTGCCCCCTAGAGGAAGGGCACAATACTGTTTGGAGAGGAGCTTGATGGGCC-------TTCAACTTT-TCTCTTACGTTCTTTAGTCGGAGAGTATCATGAATAGTTA---AAAGAATAACACCATCCCCTGTAAACCCTGGTCTTGTAACTCCCCCATACCTGGGATATGGAATAATGCATGGGTTAAGGGCTTTAGGGGCTAGctctggggtcagactgccttgatttaaatcgttgttccactac s canFam2.chr12 3768812 317 + 75515492 CCAAACTGTCATATGCATAAAAATTACCTGATAGTAGTAAAAATGCCCATTACTGTCCCTCCCCAAACTAATTACCTTTGACTATCTTTCTCCTAGAAAAAGGGTACAATTCTTTTTGGAGAGCACCTCAATATGTACACACAGTCCTACTTTCTCTTTTACATTCTTTATCTGGTGAGTATCATGAATAGTCAGAGGAGGAATAATACCAACCTCCTGGGACCCAGGTCACATGACTCCCCAATATCTTGGATGTGTAataatatatgggctaa---------ggactgactct-gcgtcaaactaccttggtt-------ttgttttgtttt a score=13825 s hg19.chr6_ssto_hap7 2347585 359 + 4928567 ctactaactg-tctgacctggaactagctgcttaacttctctaaacctcaatttacctatctataaaatgggggtaatattagtttctatctcaaggaggtattgtaaggatttt-agtactaatttatatgtggcacttagcacagtgcctggaata-------tagtgagcattc-ttaaatgacagccactattATTATCACTAGTATTACTCATAGTAGCGGTAGCGGTGAACAAAACCAA-ATTTCCAGTGGAGCCAACCAGCCACCCTTTCTTAACCAGCTGTAACTTCCAGTGAAATCACCACGATCATCCCCCCAG-ATTAACCCCACCTTCCAGTGGAATCACTGTGACCACCCCTCCAGGA s canFam2.chr12 3769311 357 + 75515492 ctgctagctattttaacctgggactacttgtttaacttctctaaacctcaaattccctatgtat-aaatgtgagtaataacagtccctatctcatggaaatacggtaagaatttgaaatgctaattcatacatggcacctaacacaatgcctggataaaatgcattagtgaccactcaataagtgatagctattatAACTACCATTATTATTAGTTGTAG-------------GTACAGAATAAACGTTTCCAGAGTAACTAACAAGTCATCCTTCCTTAATGTGCTGTAACTTCCAATGCTAACATTATAGTCATCCACACTGTATCAACCATGCCACCCAGTGGGACCATCACAACCACTCTCCCTGGA a score=64636 s hg19.chr6_ssto_hap7 2347944 1762 + 4928567 TCAACCACATTATCCAGCAGAATCACCGTGACCACGCCCCCTGGACCAACCACACCTCCCAGTGGAATCACTACAACCCCCCTGCCCTGGGTCCACTATATCTTCCAGTGGAACTAACACAACAACTGCAACCTCCAGTGTCACCAGCACAAGTGCAGCCCCTCCAGGGAATGAGGGAAGGTCTAATGGATGCCTGAGGCTGTGGGAAGTCATCCTAGTCACTCTGGCCTTGGTTGCAATGGCTGTGATTCTCTTCACAGGGCTC---TTTTATTTCATGAGTGCCTGATGTGTGGGAAATCCTTTTTCTGAGGGAGGGAGTGCAGGGAACTGAGGAGGGAAGCAGGGTAGAGAGAGTAGGGTCATTGTGTGGCTAATAGGGAATGAGAAATCAGGAGAGGGACAAAGCAAGA--CAGAGACAGCAGGTGAGAACCAGCAAGAGAGAGGGCTAGAAAAGCTGGTACATGTTCAGAGGAAATTGATGAGGAGAGAAGGGG----CCAAAGGAGTACTGAGGCTGGGGAGGCCGAATGGGGAGTGGGGACACGTGGGATGGGAGAGCACTGGAAGA-GGGGCATAACTCTGAACGATCCATCCTTTTGTTTTCTAGAGAAACTCTCTGTGCCTAAGAAACCTCTTCACCAAAGATCT-------TCACATCCCAAACCTTGGTCCATGTCCTCAAGGATATCATGGAGTCCAAGATGGGTCAAGTGAGACTGAAACGGATTTTA---GAGACCAGTGTTCTCCCACAGGCATGGAGCTGATGAGGAGACAC-----------AGTGTCCCTAAAGGCAGGCACTTCACTGTCCTCAGGGTGG----------GGAGGACCAGCGGTCTCGGTTTTCCTCACTTGCCCCCAGGGCTGCTCCTCCCAGCTCTGCTCCAGCCCCTGACACTCCTACCTTCTGTTTAGTTCTCCCAGACCTGAAACAGGAGGCTATCGCTAGTGCTGAATGATTAAATAAGTGCATCTGCTCTATGTGACAGCCAGACTGTGGGTGT--GTGCTTGTATATTGCTGTGAAGAGAGGTTTCCTATATCATGAGGACACTCTTTCGCTGTGTACTCCCAGTTCTCAAAT-CCTAGCATGAAATCCAGAGACCTCACATCTGTCCCATTTTCTTCCCCA--CTCCTTCCCTGCTCCCCGAGGCCTCTGGGTCGATGGAAGAATGGAGTCAGGAGAGATGGGGGAAGGCAGGTGCTGGTCTTTACAGACGTGTGTTGCATGGCAGGAAAACAGCCTCTGCGTGAGCCTAGAACATGAACTGGAGGAAAGTGATCCTGTTTTCATGTTGTGAGGTAGGAAAGAGCT----TGCTACTGGGGCCACCCTTAGACATGGCCACTTTTCCTGGCCACTCAAGTCTGCTCTGGGCT-----------------GCAGGTGTGAGTTGCCACCTTTCTCTCCTGTGGGCTCCCA-GCCCAGCAACTGTCCTGGGCAGGGAGAATGTGCTCCCAGTTTTTGCAAGGGCAGGACTGGCTTGCCCTGCTACGGTCTAGATCCTCAGCAGCTCCCCCAAAACCAGGCCTCAGAGGGCACAC-ATGCC--AGTGTCAGCACCATGCTC--------AGGCCTGGTCCCACCCAGGCTTCTGGTGCAACTTGCTCTCGCACACGCACCCCACTGATTCTTCCTCCCTGT-GAATCACTCGCCTCTGCTTTATCAGTTTCACCCTCTGCTAAGTCTCTTCAGCTTCTGGGATTCTC-----CTGGGTCTTTGGGAGAGC---CTTAACAGGACC-AAGCTGTTTCTCTAAGAACATTTTACAATATGATGAACAAAACTGTTTT s canFam2.chr12 3770314 1740 + 75515492 ACAACCCCACCATCCAGCGAGACCATCACAACCA-ACCCCCTGGAACTACCACACTATCCAGTGAGAACATCACAACCACCCAGCC-TGGACCAACCACACTATCCAGTGGAACTAACACAATAGCCATGGCCTCTAATGTCACAAGTGCAAGCACTACCCCTCTGTGGAATGAGGAAAAAAGTAATAGATACTTCAGGCCATGGGAAATTGCTCTAATCATTCTAGTCTCCATCGCAATGGCTGTGATTCTCTTCACTCGGCTCCTTTTCTGTCTTGTGAGTGTCTGGTGTACAGGAAATTATTTTTCTAAGAAAAAGAGAGCAGGAAAGTGATAAAGGAAGTATGGTAGAGAGAGCAGCGTCACTGTAGGGATAATAGAGAATGAGAAATCAG--GAATTACAAAACAAGATCCAGAAATAGCATGTTAGAACCAGCAAGACAAA----CAGAAAAGTCAAGACATATTCAGAGGAAAATGATGAGAGGAAGATAGGATCTTTAAAAAAGCAATGGGAAGGAGGAGTGCTGACAGGGAAAGAGGATGCTTGGGACTGGAGAGCCCTGGAGGAGGGGGCATAACTC-AAACAATTCATCCTTTTGTTTACTAGAGAAACTCTCTGGGCCTAAGAAACCTCTTCATCACATCTCTACCACCCTCATGGCTCCAACCTTAGTCTACA-CTTCACAGCTATTATGGAGTCCATG------CAGAT----CTGTGACTGAGTTCAAAGGAGACTACTCTTCCCCTGCAGTCATGGAACTGACTGGGAGACACCAATGGATCTGAGTAGCCCTGAAGGCAGAAGCATCACCAGGTGGAGGGAGGGAGCTGATCTGGATGTATGGGGGTCTGAGTGTCTCCCATAAGTCCCCA-GGCTACTCCTACCAG------------CCCTGACCATCCTCCCTCCCCCCTGGTTTTTCCTGACCATAAAACAGAGGCTGTAGATGTGACCGAATTATTAAATAAATGTGTCTAATACATGTGAAAGCCAGACTCTATGTGTTAGTGTTTATATGTTGCTGTGAATAGAGGTTCCCTGTATC-TCAGACCCCTCTTTC-CTGTATCCTTTCAGCTCTCAAATCCCTAGAGTGACATCCAGAGATTTT-TATCTGTCCCATTTTCTTCCCTGTCCTACGTCCAT-CCCCTTGAGGCCTCTGGGTTGATGGAAGAATTCAATCAGGGAAAATGGGGGAAGGTAGATATTGGACTTCACAGATTTATGTTGCA---CAATCAAAAAGTGAATG---GAACTTAGAGTGTGAAGGGGTGGGG---------------GTACTGCAAGGCAGAGAAGGACTTAGCTGTTAATGGGGCTATCCTTAGGCATGGCCACTTTCGCTGGTCACTCATGTCTGCCCTGGGCTTGGACTCTACTGAAAAGACAGGTGTGAGTTGCCACCTTTTTCTTCTGTGCGCTTCCACCCCCAAGAGAGGTACCAGGTAAGGAGACCATGCTCCCAGTTTCTGCAA-GGCGGGCCCAGCCTGCCTTG-------CCAGACCTTC------------------------CAGCAGGGACACGATGCCCAGGTGTCAGTGCCATGCTCTTAGTGAAGAACATAGCCTTGTCAAGGCTTCTGGTGCAACTTGCTCCTA-ACATACATTCAACTAACCCTTCCCGGCTACAAAATCACTAGCCTTAA----------------CCCTGCTAACTCTCTTCAGCTTCTACAGTTCTCAATGTCTGGATCTTTGCCAGAGCCTTCTTAACAGAATCAAAGCTGTTCAT----GTACATTTTATAACACTGTTAACAAAACAGTTTT a score=10868 s hg19.chr6_ssto_hap7 2350028 214 + 4928567 CAAAATCTATTTTTAA--cagatgcaagagagtatctactgtacaatt-tatttgcatgaaattcaacaataggcaaaactaatctatggtggcagagatcagatc-------tcctatgagggtgagggtttttaggaagggagcactttctgggtgataggaatgttttctatatcaactggtctgttggttacacaggtaaatacacttgtcaaaactcag s canFam2.chr12 3772054 223 + 75515492 AAAAGGCTATATagaagccaaattcaaaagaatacatactgtatgattccatttgtatgaaattcaagcataaacagaactaatctatagtgacagagattagatcactgagtttccatgggtgtgagaatttttagaaagggaa-aatttctgggtgatagaaatgttttatatcttggctggtcttttgattacacagataaatatatctatcaaaactcat a score=6575 s hg19.chr6_ssto_hap7 2350559 200 + 4928567 ctaactgaattcttaagatctgtgcatttcactttttgtaaattttacctcaaTAGGAAGAAAAAATGTATATTCGGGTTTTT---------TATTTTGGGattttttaattttta---tttttata-------------ttaGGGTTTTA--AAATAATA-------CCTTGAAGATATTTATCAGTGTATCCATTATCTCCTCTTCAGTTTTAAGAGCCCCCAGACCTTTTC s canFam2.chr12 3772277 228 + 75515492 ctaacttaatacttaagatctgtgcatttcacagtctgtaaattttatctaaaCAAAATGATAGGA--TAGAGTTGGTTTTTTGCCACataataatttaatactatataatttttaaatatattataCTACATAAATACTTTAAAGTTTTATCAAATAATAGTTTTATACTTGAAGGTAGTAACTAG----TCAGTTATTTCCTCTTCAGTTTTAATAGTCCCCAGTCTTTTGT a score=29380 s hg19.chr6_ssto_hap7 2350759 651 + 4928567 GTAAAATAATTATCATCTTTTGCACTCATTTTTTCattcattcattcaccatatttactggacacctgcttggcatgaggtctcaaggagctggggcagctaggatgaccctgtaggtcacagttgggtgagggagg------taca-------taagttacaggccaacgcatcaagtagtatgaatggaagcaccacaggaggaaacatctaacttgatgaggggaggagaggctgactcacatagaaggtgac----atttggattttgaggagttagcaggcatttacgaggagcagaagaggaaatgccaggcaagcaagcagcttgtgcaagactgggcatggcacggccagtgaa-ggtcagaagacctgtggggctagagagcacagca-gagggagCTGGGGCT-GGGGGCTAA-TGCGTGGCTTTGAACACCACTCCAAGGAGGCCAGATTTCATCCTTTAACAGCACAAAGCCCACAGATCACTTTAAGGTGTAGTGGGACACAAT-TTTTTCCCCAATAAGAACACTTCAATCAGCTGAGTGAGTAGAAAATAGAGGCTGGAAA-CCAGCAA------------AAATGGTGTTGTAATGCCCCTGCAAAGAAAGAAGCAAATAGACAAATCTAAGACCAC-AAAACATGGAAATGGGA---AAGAAGAAAAGAAGTG s canFam2.chr12 3772737 681 + 75515492 ataaaataattatCACATTTCTCATTCATTTCTTCatttattcattcaccatatttactgagcacctgctgggtgcctggttcagaaaagttggggagatgaggataaatatgtaggtcaccatttagtagaggagaaagacttacagacaggttaagtt-taggccaatgcatcaagtactactaattaaagtagcccaggaaaaaacatataattcaatcaaggggggaggagctgactcacctagaaaatggctatgacttgaatcataaagagttagcaggcatttacaaggaggaaaaggagaaATGTCAAGCATGCAAGCACCTCATGCAAGAAGAGGTGTGGCACTGCCAGTGAATGATCAAAAGAGCTGTGGGCCCAGATAAGACAGCACAAGGGAAATGAAGCCAAAGGGTTAACTGCATGGTTTTAGAGGCCACACCAAGGAGGTGAGATTTCCTTCTATAACAATAGGAATTCAACAGATTGTTTTAAGGTATTGTGAGATGGAATATTTTTTCCAAGCAAGAACGCTCTGC----CTGAGTGAGTAGGAAATAGAGGCTGGGAATCCAGTAAGGATTGGAATTCAAAGGCTCTTGTAATATCCCAGCAAAGAAA----CAAACAAACAGATCCAAGGCCACAAAAACATGGAAATGGGAATCAAGAAGAAAAGAGGTg a score=2239 s hg19.chr6_ssto_hap7 2351724 34 + 4928567 TTTCAAGAGATTTCTGCCTAGCACTTTTTTAAAA s canFam2.chr12 3773592 34 + 75515492 TTTAAAGAGGCTTTTGCCTAGTAGTTTTTTAAAA a score=6801 s hg19.chr6_ssto_hap7 2351758 124 + 4928567 ATCCCCAACTCCAGAATTTATGGTGACTTTTGTTAA-AAGTCCTGTTTTAGGGAGGTCTTCATCTAATGAGCTCTAGGCAATTTTCTTAAAACTAATTCATCAAATGACTAATTCTTTGAATTTT s canFam2.chr12 3773830 119 + 75515492 ATCCCCTTCTCCACAACCCATGGTGACTTTTGTCAAGAAGTCCTGTTTCAAGTAGGTCCTCCTCTAAC-AGCTATAGGCAATTTTCTTAAAA-----TAATCAAATGATTAATTCTCTAAATTTT a score=2457 s hg19.chr6_ssto_hap7 2351894 78 + 4928567 AAATCC--TATTCAGTGTGATTCCCTCCTGCTGCAGGCTGGAGGCTGGGAGACAG-----AGGGAGAATGGGGAATGTCTTCTTG s canFam2.chr12 3774395 84 + 75515492 AAACCCAATAATCAACATGTCTCCCTCCTGCCATA-ACTACAGACTAGGGGAAAGGCAGAGGGGAGACTGAAGAATATCTTGTTG a score=4946 s hg19.chr6_ssto_hap7 2351985 86 + 4928567 TTTCTAGTTAAGAAAATACTCAAGATAAATATATTTATTTATAACAATTTTCACATGAAAGACTTTATTCAAAAATATGTGCAAGA s canFam2.chr12 3774720 85 + 75515492 CTTATAGTCAAGAATATACTCAAGa-aaatatatttatttataaaaactttcatttaaaataCTATATTCAAGAACATATCCAAGA a score=22450 s hg19.chr6_ssto_hap7 2352071 449 + 4928567 AAAAATTATTTATTCTTGACTCTGATGAATAATTGCAAATATGATTCCTATGAATAGTATATAAATTATATCTAAAACTATaaggctacagactatacgattcccttcatatgacattctgaaaatggcaaaattatagggaaagaaacaagatccatgttgccagggtttgggaagtggg-------agaagggttggctctaaaggaacggcatggggggagattgaggaggatgaagggattcggtgcgccgaatacgtgactctaccatttatcaaaatccatagaactgtacactacaaaaagtgatttttagggtatggaaattcagcaaatcaaccaggatgtggagggaaagatggaaagcagactctgacaaatgactcatgtaagcacagtgaaacggatggagaagaaggagctggcctaagtaactttgaaaaactgttttgag s canFam2.chr12 3775101 446 + 75515492 AAAAATATTTTATGCTTGACT------GATAATTGCAAATATTATTTCTATGGATAATATATAGATTATAGTAAAAACAATaaggctacagaccgtgtagttccattcattcaacattctggatatcgcaaaattatagagacagaaaccaggtctattttgccaaaatctgggagtcagggtaatcaggtagggttgactattaaggaacagc-caggaaggggttgggggtgatggaatgtttcagtgtgctgaagacgtgattcaatcatttatcaaaatctatacaactgtaccctacagagagtgaattttactgtgtggaaatttagcaaatcatccagggtatgtggggagaggtagaatgcagactctgacaaatgaatcacatcaccacatcaaatgggat---aaggaaggagttgatctaagtgactttgaaaaacagtgttaca a score=6184 s hg19.chr6_ssto_hap7 2352839 130 + 4928567 agacaaaaaaaaaaaaaaaatacagaaacactgtactgtagttggtaaatgtgtttctggcaagggtatgaattagcagttctgaaaccactatttgtttattagggttgaaaaaataagtaa-aaaaata s canFam2.chr12 3775769 129 + 75515492 aggccgaagataaaaagaactgcacaaacac--tactctcgttgacaaatttgtttctcacatgggtgtggattagcaactctgaaactaccatctgttcaatagggatgaataaataagtactagaaata a score=5707 s hg19.chr6_ssto_hap7 2352981 118 + 4928567 ttcgtagccatgtcagagaaaggagttacaaataaagaaaagggagagactagaatgaaccccatgttgctggattaaagctggaggtgtcaaaatgcacccatgcttgtgtttaaaa s canFam2.chr12 3776024 107 + 75515492 tttgcagccatgtcagaggaagaaattacaaataagagaagaggaaaaactagaatgaattctgtgttgctgaactgcagctgtagg-----------attcatacttacgtttaata a score=14555 s hg19.chr6_ssto_hap7 2353410 294 + 4928567 tatatgcagacaggtcattgcagaaataaatacagacctgtgtttatgcatgagttagtttacatacatacgtttcctagctctaacttccgtgg-gggcaagaagcagtgacatcc-actatgaatgagcacacct-----agtacccaaatcttggtttctaaatattattctctaatacaaagaggagccagagctctgtggagaaatagttgattccagggcctggatggacaaaataaaaaatgagcatgaagcatcttgtaataccagaatgcaagaaagtgttttaaaaaggga s canFam2.chr12 3776131 283 + 75515492 taaatacagatagataa-tacagaaataaatacaggtatgtgtttatgcatgagtgagtatacata------tttcctagctctaacttctatgatggacaagaagtagcaacacccaattaacaatgagcatacctcaatgagtgcccagatcttggtttctaaataccattctctaataaata---gaatcagagttacatggagaaatggttgattctagggcctgggcagagaaaatacaaaatgagcatggaacatcttgt--------gatgtaagaaaataCTTTGAGTATGGA a score=2168 s hg19.chr6_ssto_hap7 2355948 77 + 4928567 GGTCAGAGAAGGAGGAAAAGATGTGGGTATTCTCATT-CAGGCCTGACCTGACC-----ACAAGTGGACTAATTTTGTGCAGt s canFam2.chr12 3776704 78 + 75515492 GGTCAGAGAAGGAGGGAA---TATGGGCATTCCCTCTGCAGGCCTGACGGAACCTGTGGACAGGAG--CTACTTTCATCGAGC a score=20717 s hg19.chr6_ssto_hap7 2356372 868 + 4928567 AATTGAG-AAAGCTCACTGGGGTGAGGGCACTCGAGCAGGGGGAGCAAGGAGAGAGATCCGTGGGCTGGAGAGAAGCCAAGGAAGAGGATTTGGGTGGATGATTGAGCAAAGAGCGAGGTTTTAAGAGACAGAGAGATTGGGTGTTTTAGCCCCCTCGTGAGTGTTCCTCTCCTTCTGTTGGAGGACCTTCTCTTGGTCCTTACCAAATGTCCTCTACCCTCTGACACCCAGCTCTCCTC-----TTGCCAAGCATCATCCCCC-AGGCAGGCCTGGCCTATGCCCTCCTTGGTCATCCTGACTTTACTGTGGCCACCTGTGGGAAGGAAGGCCGAGGCCCTCCCTGAGCACTGAAACACCGGGTGGAGGATGGTTTTCAACT---AGGCTCCACATCAGAAAGCAGTGCACTCACGCTGACAGGCTTGATC-CCCTGTGGCTGCTCGACTCTGGGCTCTGGTCCAAAGCTGAGAGCCCCCCTTCCCCTCATGACAGCC-TCTTCTGCCCTGCC------------CGGCCACT-CCTTTGAGTGACAGGGGGTAATTGAGAAGCTGCTCCTCCCTCCAGGAAGGAAGACCCGGAGCTCTGGCTTCCCTCGGCAAAGCACATATAAACCCACAGCCACTGCGGGTGGAAGGAGAAGGGCAGGGTGGAAAAAGTTTGAGAGAAGGAGGGAGGAAAAGGTGTCCTGGCTAGCA--CCATGTGGATTCTCTTGAGATG---AGAAGAAAATGCCCCGCTACGTCCCCCTTCT-GCTGCTCCTGCTTCTCCTGAGGTGTTCACAACGGGGTGGAGGAGTTAATTTTGGTGAGAAGGATGTAAAAG-TCCCCAGGACCTGGAGAGATGGAG-TCAGGGTCCCTGAAGAAGGAGCCTCTTGGGACTC s canFam2.chr12 3776782 771 + 75515492 AATTGAGGAAATCTTGGTAGGGGGAGGGCACTCAAACAGTAGGAACAGGGAGGTGGGCCTGCGGGCTGCAGATAAGCCAATGAGAAGGATCTGGGTG-ATGATTGAGAGAAGAGAGTGGTTTTAAAA--TAGCGAGATTAGGTGTTGATGTCCCCTCGTG---------------------------------------------------------CCGCCTGACACCTACTTTTCCTAGATAGTCGCCCTGCACCGTCCCCCCAGGCCCACCCGGCTTTCGGCCTCCTCGG------------------------------GAAGGGAGCCCGAGGCCCTCGCTGAGCACCGAGACACCGAGGGGAGAGCGGCCCCCACCCCCCGGGGTCTGCACCGCAGCGCGACCCGCCCAAGCTG-CAAGCTCCACAGCTCTAGGGTTGC---GATCTGGGCTCTG---------------CGCCCCGTTGCGCCTGGACAGGTGTCTTCTCCCCTGCCGCCCGCTGCACCCGGCCTCTTCCCCTGGGTGACAGGGACCAGC----AGGCTGCTCCGCCCT---GAGAGAAGGACGGAGGACTCGGGCTCCCTGGGCCGCAGCACATA--AATCCGCGGCCACCG-GGGCTTAAGAACAGGAGCGACGCGGCG-------GCGGGAAGGAGG-AGGAAAGCGCGCCCTGGCTTCCAGCCCCTGCGGGTTCTCTTGAGATGGAGAGAAGGAATTGCTCCGCGGCATCCCTTCTCTTGCTGCTCCCGCTTCTGCTCGGGGGTTCAGAATTGGGTGAGGAAACGAACTTTGGAGAA---GATGCAAGGGCTGCTCCGGGCTCGCCGAAGTGGGGGTCGGGACCCATGGAGGAAAAGCATCCTGGGACTC a score=9030 s hg19.chr6_ssto_hap7 2357240 211 + 4928567 AGACAGGCCCAGTCCTGAGCGAAGGTACGGAATAGGTGAGTGAACCTTGGG-AACTCCGGACCCTGTTATCTACCCTCAATCACCTGCCACAGGGAAGCAGGGACCCCAGCGTC------------TTTCTCATATCCCCTTTTAAGGAAATGCTCTGCTTTTGATTTTGTGCATTTTATTTAAGTTTCTTTGTTTCAACTTTCCTGGAGAAATGAAAAATTTG s canFam2.chr12 3777761 221 + 75515492 AGGCAAGGCCAGTCGTAAGCAAAGCTATGGAGTAATGGAATGAACCTTGGCCAGCTCCGGACCCTGCTACCTGCCC-CAAACCTCGGTCACAGGTGAGCAGGGCTGCCAGAGTCCCGTTCATTCTCTCCCTCACATCCTCTTTTAAGGAAATTATCTTCTTTTGATCACTTATATTT-ATTTAAGTTTTTCTATCTCAATTTTCCTTAA-AAATAAAGGATTTG a score=37127 s hg19.chr6_ssto_hap7 2358099 942 + 4928567 AACCCTATTAGAAAAATGTGGAGCATCAGCAGTAGGGAGGGATGACTAGATTTGGGCAGA--GTCCCAAAAGTTCAAAATTTATGCCATGTAAGCTACATGTATTCCTAAGAATAAGAATACTCCCAAGTCCTGACGGCTGCCTG-GGGCAGTGAGGGCTGGAGACGAAGAGGACTCATCTCTTCTTTGTACTTA-TACCTGACTCAGTGTTGCCCTCAGTCCAACTAGATCACACCCACACCCCTCATGACTCCTCCCCTAAGCCTGCCCCCATACCACCTTGAATCTTCCCTGCCTCCAAGCCTACCACGTTAGCCCCAGATCTGACCCAGAAGCTGTCTCATGCTTTTTTTTTCCTTTTTTGAGATGGAGCACCTGGCCAGCTGTCTCATTTTAAATCATACACCAAGC-ATGACCTGAGTGTAATCTCTAACATGAATCACAGCTTCTGCCTCATTGGTTTGCCAGAACCGCAGGCACAAATGGATGAGAGGAGACACCTATGAACATGGAGCCAGAATACCCCAATTGCTGAAACACCAGTTCAGA-------------GAGGAGTGAGCTTGAGAAAGAGTCAGGTTTAGTGTCCCACGGAAAGAGACCAGACCTGGAAAAGACAGAGTCAAAGCTGGGTGAGC-AGGCCTTCGAAGGGCGTGGCTCAGCAA-AGATAATCCATATTGTAGTGCAAGAGGATTCTTTGTGGAATATGTTTTACCAGAATTAAACCAAAAATGCCAAATGATCCCTAACTCGAATAAATCTCACCACATTACCTGGGGAGAGGTGTCATTTGGATGTGA-GGATAGTTAT-GAAAATACTGAGCAGAGCAGATGAGGATAGGCCATCAACAATTCACATTAAATGAGATTACTTTTTAGTAGGACTAAGCCAAAGCATTTCCACTAAGCACCCAGAGACCAGCCCTAAAGACTCAAGAATAAGAGAAAA s canFam2.chr12 3777982 891 + 75515492 AGTTTTATTAGAGGAATTTTGGGAATCAGCTGCAGATACAGAGGAATTCCTTTGAACAGAAGGATCCAAAACTCCAAAATTTATGCCACATAGGCTGCATATATTCATAAGAATAAATATTCTC---AGTCTTGATGTC---CTGCGGGTGGGGACAGTGGGAGGCACAGAGGCTTCACATCTTCCTC-TACTTAACACCCAACTCAGTTTTGCTATCA----ACCTCAATCAGAGGTTGATTCCTCACGACTCATGC--------TACCCCCAAACCATCTTAAATTTTACCTGCCTCCGATCTTGCTACTTCAGCTTCAGAACAGAACCAGGAACTGTCTCAT------------------------------------------------TCTAGATCATACACCAAGCCGTGTCCTGAATTTAATCTCCAGTATGAATCACAGCTCCTGCCTCATTTGTTT------ACCCCGGACATAACTAGATGAGAGGTGACATATACAATTATGGAGTAAGAATACCCAATATGCTGAACTACTAACTGGGGATGCGAGTGGGAGGGGCAGTGATGTTTAGAAAGAGTCAGTTTTAGTGTTTCACAGAAAGAGACCAGAACTGCAAAAAGTGGACTCAAAGGCTGGTGAGCCAGACCTCCTAAGGTTATGGCTTAGCTCTAGAGACTCCATATTGTAGTACAAGAGGATTCCTTGTGGAATATGTTTTATCAGAATTAAATCCAAAATACCAGATGATCCTTAACTCGAATAAATCCAACCACATCATATGGGGAGACCAGTCATATAAATGGGAAGGATAACTATTGAAAATATTAAGCAGAGCAGATGATGACAGGCTACCAAAGATCCACATTAATAGAGATTATTTTCGAATAGGAACAAGCCAAAATGTACCCACTAAAAACCCATTGAGCAGCACTGATGACTCACAGACAAAACAAAA a score=10677 s hg19.chr6_ssto_hap7 2359060 251 + 4928567 AGGACCACTGAGGACCACATCACTGCAGACCCAGGGACCACCGAGGACT------CTG------------TCACTGCAGACCCAGGGACCACTGAGGACAATGTGACTGTGGACCCAGGGACCACCGAGGGCTCTGTCACTGCAGACCCAGCGACCACCAAGGACTATGTGTCTGCAGACCCAGGGACCACCAAGGATTCTGTCACTGCAGACCCAGGGACCACTGAGAACTTTGTCACTGCAGACCCAGGGACCACCAAGGACTCCAT s canFam2.chr12 3778892 269 + 75515492 AGGATCACCAAAAATCAAGTAATTGACAACCTAGGCTCCACTGAGGACTACAGTACTGAACACCGGGTAACCTCTGCAGACCCGGCCACCACCGAAGACAACGCCTCTGCAGACCCGGCCACCACCGAGGACAACGCCTCTGGAGACCTGGCCACCACCAAGGACGATGCATCTGCAGACCCGGCCACCTCTGAGGACGATGCCTCTGCAGACCCGGCCACCACCGAGGGCTCTTTTACTGCTGTCCTGGGAACCACCAAGAACTATAT a score=1754 s hg19.chr6_ssto_hap7 2359311 91 + 4928567 CACTGCAGACCCAAGGACCACAGAGGACTCCGTCACTGCAGACCCAAGGAC---CACCAAACACTCCATCACTGTAGACCCAGGGA---CCACTGAG s canFam2.chr12 3779128 97 + 75515492 TACTGCTGTCCTGGGAACCACCAAGAACTATATCACTAAACATCCAGACACTCGCCCTAAGAGAACAATTGCAATAACCTCAGTGAAACCCACTGGG a score=3280 s hg19.chr6_ssto_hap7 2359402 70 + 4928567 GACTCTGTCACTGCAGACCCAGGGACCACCAAACACTCCATCACTGCAGACCCAGGGACCACCGAGGACT s canFam2.chr12 3779087 70 + 75515492 GACGATGCCTCTGCAGACCCGGCCACCACCGAGGGCTCTTTTACTGCTGTCCTGGGAACCACCAAGAACT a score=24129 s hg19.chr6_ssto_hap7 2359509 644 + 4928567 CACTAAACATGGTGACACTCACCTTCTGTGAACTACTTCAGTCACAGCAGTGAAACCCACCAGGCTCCTGACACCCATGGGAAT--TATCCTCATATCCCTGGCTGCAACCACAGTCACTGTTGTGCTCTTTGTTGGACTGGGCTTCATTGTGGTGAGTATTTGGTCTGGGAATATTCAGGGCATCAGGGGAACGAGGCCAACGGAGGATAAGCG-GTGGGCATGGAGAGCTGAGGTACAGAGGCCCAAGAAATCGTCAGGCGTGAGGAAGCCTACATAGAGAGAGCTCTGCAAAGACTCCTGGAAAGACAGAGGTGGA---GAGAAAGGAAAAGAGCACCTGGCACAAAAGATGCAGAAAGCATTG-GGGACAGAGGAAGCTGTGAGAGACAG-------------GAAGGAGAGAAAGGGAAGAGAG----------------GCTGAGAGTGAGAAACATAAGAACACAAACATGGTAAGACACAGCGGGAGTCAGGGCAAAGCATGAACCGTTAGGTACAGATGGATGTAAAAG--AGGAAATTTTCCTAAGAAGACAAGGAACTGGGGACCAGAGGAGTGGATGAATTAGAAACATTCTGGGTGGTCCACTCATATCAGAAATTACATATTCTTGTGTTAATTACTACCTACTCTGAAGTTCTGAAGAAGATTTTTT s canFam2.chr12 3779161 653 + 75515492 CACTAAACATCCAGACACTCGCCCTAAGAGAACAATTGCAATAACCTCAGTGAAACCCACTGGGCAGTTGACACCTACGGTGTTGACATCCTCATTTCCCTGGCTGCCACCACAATGGCAGTTGCACTCCTTGTTGGACTTGGCTTCTTTGTGGTGAGTATTGGCCC--AGAATGTAAAGGACATTATGGGCAAAGGGGTATCTGAGGAGGAGGATGTGGGCATGAAGAGTTAAGCCATG--------ATAAATTGTCAGAGGTGGGGAAACCTACATAGAGAGAGCTTTAGAAAGAC--------AGACAGAAGCAGATGTGGAAAAGGAGAGGAACAAGAAACATAAAAAATGAGGGCAGCACTAAGGGAGAGAGGAAGGTGTTAGAGACAAAAGAGGATGGAGAGAAAGAGGGAAGGGGAAGAAAGTATGGAGAAAGATAAAGCAGACAGAAAGGAACATAAAAACACAAATACAGTAAGGCATGGAGAGTTATGGAGAAAGGCATAAACCATTAAGTACAGATAGATGTAAAAGTTCTGAAATTTTCATAA-AAGACAGGAAATTGGTGGTAAGAGGAAAAGAGGATGTAGAAACATTTTGG----CCCGCTTATGTCAAAAATGATGT---TTTGTATTGATTGCCA---GCTCTGAGATTCTGCAAAAGTTTTTTT a score=7650 s hg19.chr6_ssto_hap7 2360153 155 + 4928567 TAAAACCAAAATTGAGTGGGTTTTTATGAGCCACCACTACCCTGCACCAAAGAGACAGTTTGTACCAGCTCTCAAAGAGGAGCTGTGGGTGTTTTTCTGTCTCTGAGGGTCCCTGTTGTTTCTACAAGAGGAGACAAAAGAATTCCATGCCAGCC s canFam2.chr12 3780035 153 + 75515492 taaaaCCAGGCTTAGGTAGGTTTTTATGAGC-ATGGCTACTCTATATTGGTGAGACAATTGGTAAGAGCTCTCAAAGCAGGGCTCTAGCTATTTTTCTGCCTCTAAGGGAAGC-ATTGTTTCTACAAGAGGAGATAAAGAAACTCCATGCTAGCC a score=40308 s hg19.chr6_ssto_hap7 2360802 783 + 4928567 TTGTGGCTTCCTCTCGCTGACATTTGATCTAAAACCCAAGCCTCCTGCTTCTGGCCTGCTGCTTGAGGGGGAAGGACTGGTCCTTTTTGGCCATCCTGACCTACGGATTAAGTGCATGTCGAAATTTTAACAAGTGGCGGCTTGCAGGATTAGCCAACTTGGGCAGGTCATTAAAGCCTTGTTAATTCTTGC-GGTCATTGATGccattgtgcactgacccctgctccaagatgcaaatccacagctttggatcagtttgtaagtgtgagtaaagccgaaagtaatgcatgatacagatgaggtgttcacatttaattctgctaaaatgacaccatgaaactagagcattctgaaggat-gctgacaagaggaaaatgg-aatgaaagcgtccatatgtacctgactcatgca--tgagtcatgttcagtattcaccagtagagggaggaccttctggacttcgctgttaccataaacaattggatttctgatcatgtggatcaccatgaaaagttggacactcttgcgctagAACAAAAGATGCTTTCCTTCCTCCAAACCAGGC--------ATTGGCCCAGAGAGGTCACTAGCATTAGCACCTTCTTAATTTCGTGTAGAGACTAAAAACAAGAGATGGCTCAAAAGGCTCAGGGTGTGGGAAGTAAGAGGAAAGTCTATGCTCCCAAACTTGCTAAATTTTTGACTTTTAAACCTTTAATTCGAAAAGTTTTAAAAATAAGAA----CTATATTACCATTCCTCCCA--AGTTCCATTTGTCAAAATGCTTTTTTCT s canFam2.chr12 3780188 783 + 75515492 TTGTGGCTTGCCCTTATTGACTTCTGGTCTAAGACCCATACCTTCAAGGTCTGACTT-CTGCTGGATGGGGAAGGGCTGGTTCTTTTTGGTAGTCCTGAC-TAAAGATTAAGTTCTCATTGGAATCTTAACAAGTGACAGCTTACATGACTAGCCAGCTCATGTAGGACATTAAAGCCTCATTAATTCTTGTTGGTCATTGATGCCACTATGCACGGACCTCTGCCCCAGGAGGCAAAGCCACAGCTTGAGATCAGTTTGTAAGTGTGATTTAAGCCAAAAGGAATGTATTATTCAGCTGAGGTGTTCATGTTTAATTC----AAAATCACACTATGAATCTAGAGCATTCTGATGGATAGTTGACAAGAGGAAAGTGGGAACAGTAGCCTCTATATGTACTTGACACACACACATGAGTCACATTCAGTATTCACTGGTAGAGGAAGGACCT-CTTGACGTCAGTGTTAC-ACAGACTAGTGGATTTCTAATTATGTGGATCACGATGAAAAATCGGACACTCTTGCTCCAGGCTGGTGGATACTTTCCTCCCTCCAAACCAGACCTCTAAGTACTGATACAGAGCAGTCACTAGTAATCGCACCTTCTTAATCTTTTATAAAGACTGAAAACAAGAGATGGCTCAAAAG-CTCAGG--------AGTAAGAGGAAAGT-TGTGTTTCCAA-CGTGCTAAATTTTTAACTTTTAAACATTTAACTGAAAATGTTGAAAACATAAGAATTATCTATATTTTCATCTTCCCCACTAATTCCATTTACCAAATAGTTTTCTTTT a score=32729 s hg19.chr6_ssto_hap7 2361965 667 + 4928567 CCCTAAATGTCGTCCACATTTTTGGCAAGTATTGATCTCTAGTAGTCAGTGTCAGGATCTGAAGAAAACAGTGACATCTAGCAGACTCCCAGAGCCAGGGAAACAGGCTGGGCAGA-AGTGATAAATTACAAACCACCAGGGTTAAGAGAAGAACAGAGTGTTAAAACCAAACCATTTTCTTCCTCCCTAGAAAGAGTGTTTCCTGCCTCCATTAAATCCATCCACCAGGGTTATTTATCATCCCCATGTCATGGACTACAGTACACCATAAAGAGGACCCCAGCAGTGA----CTACAGTTGGTTCTAGAAAAAGGAGACCCCTCATCCGCCTCTGCAAGACTATGAAGCATGATGTGTATCCTCAGGCCTCCACTCCTCCGCCCTAGTCTGGAGCCCTGGGACCACCACATGAGGAAGGCAGCTGGCCCCTGGAATAAGCATGTGGAGGACACTCAGAAGGATGCCCATCTGCTCTGAGTGTCTCCTAATTCTGCCTGACCTTGGTTACTTCCTCTGGGCAATCGCCTTTACCTATCTACCAGGTTTTG-----------------AGGAATTACACACAGCTCAGGTATAAGAGATATTCGGTAAGTCTGATCAAATCAATAAAGCAAAT-TTTATCTGTTTTTGTCTGGGACATATCTCTACATTCATTCATTTAACCAAAAAAAA s canFam2.chr12 3780971 674 + 75515492 CCCTACATGACTTCAAGATTTT-GGAAATTTTGTATCTCTAGGGGTAAGTGTCAAGATCTAAAGAAAATGGTGACATAGGAAGGAATCACAAAACTGGGAAGAGGAGCTGGATAGATCTTGATAACTTAC----CACAAGAGTTAAGAGAAGAACTG--TCTTAAAACCAAACCACTTTTTTCTCCTCTAGAAAAGTTGTTTCCTGCAGCCATTAAATCCATCCACCGGGGTTGTTTATTTTCCCCATGCCATGGATTGGAGTGCACCATGAAAAGGATTCCTGCAGTAAGTAACTGTAATGGGTTCTAGAGCCAATCGGTCCACCATCAGGCTCTGCAGGACCATGAATCATGACATGTACCCTAAGACCTCCACTTTTCTCCCCCACTCCAGAGCCCTGGAACCACCAGATGAGAAAGGTAGCTGGCCCTGGGAACAAGCATATCAGGAACACCCAAAAGGATGCCTGCCTGCTCCGAGTATCTCCTAATTCGGTCTGGCCATAGTTACCTCCTCAGGAAAATTGCCTTTACCTATCTACCAGGTTTAGTCGTAAAAACTATTTGAAGGAGACAGACACAATTCAGGTATAAGAGATATTCATTAATTCTGATCAAAGAAATAAAGCTGATGTTCATCTGCTTCTGTCTAG---ATGTC------ttcattcatttaacaaaatggaa a score=11965 s hg19.chr6_ssto_hap7 2362950 273 + 4928567 TGCCTAGCATGAGCTCAACACTCTACGTCTCCCAGTCTGTCTA-TCTCAGTCTACCTGTAAGCTGAAGGATACAACTT----ATCTCTTAAGAGGACTATGCCCGCGTTCTCCTACCACCCAGGCCAAAGGGTCACATTTACAGGATGTAGTCAACTGGTCATTCAGCAAGTATGTA-TGAGCACCTGT-GTGG-GACTGGCCACCGTAGCAAATAAATGAGTCTCATCTTAGTCAATCGCGGTGTGAAATGAGGACACGAAGTCCAGACCTAACCTCTAA s canFam2.chr12 3781645 273 + 75515492 tgcttagcatgggccaaacactCTATGCCTTTCTGTCTGACCAGTCCGAGTCCGTGT---ACCTGAAGGAGATAGCTTTCTCGTCTTTCAAGAACACTACACCCAAGTCCTCTCCACACCCTGGCCAAAGGATTATGTTTACAGGAAGTAGCTAACTGGTCATTCAACAAATATCTAGTGAACATCTACAGTGGAAACAGGCCACTGTAGCAAATAACTGAGTTTCATCTCTGTCA----TGGTGTGAAATGAGGG-ACAAAGTCCTGATCTGACCTCTAA a score=6123 s hg19.chr6_ssto_hap7 2371780 197 + 4928567 GAGATGGGCGCCTCTCTGGAGATTGAGCGCCACTTCTGAGGGCCT--GGAGAAGTTGACTTGTTTTGCATCCCACGGGGTCACCCCCACCTC-CCCCTTTCCTTGCACTCACTGACA--TGAGACACAACGTATGTCCACAAACAACTGCTGCTCCtcattgcatctaaagctccgtt-gccggaaaacataccattatttca s canFam2.chr12 3783457 195 + 75515492 GAGAGGAGCACCTCT-TGAAAACTGC---CTACTTCTGAGTGCCTCTGAGGAAGTTGGCTTGCCTTACAGGTCA-GGTGTCACACCCAGGTCACTTCTCATCTTGTACTTGCTAAGGGCTAAGGTTCA---TATGTCCATAAACAACTACAATTTTTCACTGAATCTAAGACTCCATTAGCTAGTAAACATATCATTATTTCt a score=2002 s hg19.chr6_ssto_hap7 2372264 352 + 4928567 tatatatatacacacacacatatatataAATGACTTTCAGTGATTCATTTAACATTTTCAGATACTTGTTCCCTCACTTACAAACTAAACAACTAAACCATTAATTAATTAattcactcattctactcacatttattaagtgtggattattggacaagcacactgacgtcaacactgaggatacagcagtgagctggtgtcctgtctttagggggcttttgttacagtgACTTGGTTTCTGATTATCTTTGTCACACTGAATCTGTGAGTCAGTGAGTCCGTGACCCTAAGTGAGTTTCAGagtgaaaacagacaccagataagaagccagaaaacctgggttctagtctag s canFam2.chr12 3786805 202 + 75515492 tatatatataaatatatacatatatat-------ttttatatatatatttacagtg---ggatatt-------------------------actcagccattgaaaaaagaatgaaatcttaccatttgcaa-------------------ggacAACTGCACTAACAT--------------------------------------------------------------------------------------------TCTGTGACTCAGTAA-TTTATGACC--AGATGAACTACAGAATGAAAATAGACAACAGAAAAGAAGTCAGGAA-CCTGGGCTCTGATCTAG a score=15810 s hg19.chr6_ssto_hap7 2373237 412 + 4928567 TGTCACTAGATCAAGAAAGCTCCAGAGTTTTTCTTGTTCCCTTCAGGTGTCAAGCAATATCATTTTATGTATATAAACATCTAATTCAGAATAGTTTCACTCTTTTTTCCTATTGTCCTGCATAAAGCTTCCCCCTCCCCAGTGGACAGACTGcaatgggctggcatctgacatttgtctgcagacctcatggtaggagacaggctggttttctgccctgggagtgggagtgtaggaaaggaggaggcactggggacctgtatccc-aggttttcagggcaa-ggctgtgtaagtatttccagcagactag-tgtgaggcatgctaggaagtgagctgatgtggagctgagctaatcctgtctgatgtggccacctacaggcatcaacaggcctcagcagagagaagctgaagtg s canFam2.chr12 3787535 380 + 75515492 TGCCCCTGGGCCAAGAAAGTTCCAG-----TTTTTGTCACCTTCAGGTATTAAGCAGTATAATTTTCTGCATATAAATGTATAATCTGGAACAATATCAGAACTTT--CCTATTGTTCAGTATGGAGCTTCTTGTTCCCCAGTGGACAGCCTACAGTGGACTGGTATCTTGTCTTTGCCTGGTAAATACA-------------GCTG---------CCTGGGGGTGGGAG-----GATAGGAGGCGATGCTGGGGTGCTGGTTCCTGAGTTTTTCAGGGCAAAGGCTAT-TAAGTGTTTCCAGTGGACTAGCTGTAAACCAGGCTAGAAAGAGAGCCAGTGTGGGGCTGAGTTACTCCTGTACAGTCTGGCCACCTACAGGTGTGAGTAAGCCTCAATGTAAAGAAGCTGAAGTT a score=18990 s hg19.chr6_ssto_hap7 2373649 503 + 4928567 attactgcattcctatg-agctgtgggaggaataaATCGTGGAAAGAAATCCTCATTTGCAAC-------------TGTATGGCATT---------------Aggggtgaggggtctcggaagaa---------gcacccaaggaggaggaatcccctgtaagcacctaccagtcccagagaatgcaaagccctcttgcaaaccgtgcctgctccacgccccagaccactccttcccc--------caacccttccccattctactcaaccttggagggttagaaaccaccattagcaagacaggagaagaaggatagatgcataatgttgaa-------gacctgtttccctatttc-tcatcttcccatccttgcaaagcccttgctggaggaaaggagacttacctttggaactaaacgttgagtttctgaattggcattgtgtttggtaatataaaataactacaggac---------ctaagagagatcagaacagtcttagtactgtccatattttcatcttggaatggggaaaactggctccactgagcaagttaagga s canFam2.chr12 3788210 543 + 75515492 ATTGCTGCATGCCCAGGGATCTATGGAAGACATAAATTATAGAAAAAAGGCTTTACCTGCAACAAGGAACTATAGCTGAGTAGTCTTCAGCAATGACTGTGGAAGAATAAGGGATCTCAGAAGAATCTATGAAAGCACTCGAG-------AATCAGCTTTAAGCATCTGCCAGTCCCAGAGCGTACAACACCCTCTCACCATCC-------TGCCAGGCAAGAAAGAACTTGTGCCCCACTATCTGTAATCCTTCCCCATTCTACTCAACCTTGGAGGGTCAGAAATTATCATTAGCAAACTAGGAGAAGG-GGATAGAGACTTAAAGTAGAGAAAAGAGGAACTGTGTGTGCATTTCCTCATCTTCCCACACTCGGAAAACACTAATT-----AAAGAAGATTTAACTTTGGAGCTGGACATCAAATTTCCAAATTGACATTGTATTTGGTAATATAAAATGACCATAGGACTTTCATCACCTAAGAGAGATCAGG---TGTTTAATACTGTTCCTGTTTTCATCTTGGAACAAGGAAAACTGATCCCACTGAGCAAGCTAAGGA a score=2944 s hg19.chr6_ssto_hap7 2374152 51 + 4928567 cGTCATAGACTGATCTGTAGATGTTCAATGAAATCTGTAATTCAAGACTAA s canFam2.chr12 3788874 50 + 75515492 TGTGATAGACTGATCTATAGATGCTCAA-AAAGTCTATTACTCAAGACTAA a score=10528 s hg19.chr6_ssto_hap7 2374538 279 + 4928567 CTTATTCTTGAGACACATGCGATGCAAGACAAGTATTTATTGCTAGGATCTCCTCAGGTAAGCTGTGCAGTAAGTctgtgctgtcctacatggtagccattagc-cacatgtagcaactgagcacatgaagtgtggctagtccaaatacaaatgtgctcttaagtgcaagacacacatgagatttcaaagacttagtacaaaaacagtaaaatatctcactaataatttttatgtttattacttgtcaaaatc--acaatattttggatatgctgtgttaaa s canFam2.chr12 3788924 258 + 75515492 CTTGTTCTTGAGGAATATG--ATTCAAGACAA-CACATGTTGCTATAGTTTCCTCATTAAAGGT----------Tctatgttctccaatatggtagccattagctcacatgtagcaa-taaccacttaaagtgaggccagtccaaattcagatgatttcttaatcatacaacacacaccagatttcaaagtcttagtaccaaaa---------agctcactaataatttttatatttattacactttaagattgtatattattttggat-tactggtttaaa a score=1399 s hg19.chr6_ssto_hap7 2374817 24 + 4928567 taaaatttactattagaattaatt s canFam2.chr12 3789404 24 + 75515492 taaaatatattattaaaattacct a score=25243 s hg19.chr6_ssto_hap7 2374844 791 + 4928567 cctgttgttttttacctttttgatgtgactactagaactttgtaaattacacggagctcgctttctgtggacaTGTAGTCTCTCTCACAGAGAAATACATGTATATTTCTGCTGGACATGTAGTCTCTCTCACAGGTCATAAGGCACTGAGGTCACAGGCCATA---GGTTGGGATGTTTCTCCTCCAGAGAGTAGCTCATTCTCACTTTAAATCATCCTAAAGAACACAGGTACTGGTAGGTAGGTGGGCCGCAAGCTGGATTGAGTGGGGAAACTTCCTGCTGTCTTTGAACCAGAACAAGAACAGAGTTGGGAGCCTGTATTTTGCATAGTGAAGGCACACTCAAGGGAGCCACCTATCTTGGGGAGTTATGCTGGCCCCCAAAACTCAGAGCGTGCTAAAGGTGAGGCAGAGAAGCCTCCTGTAGGA-AGTGCATACAGGGAGGGGCGTGGGCCTCTGAAATCTGAAAGCACCATGTCTCATTTCCAGTTTTAAGTGTACCTGGAATTCTCTTCTGTTATCCCTAGGTCTTTAGTGGAGCCTGATTAAACATGAGGCTGAGGGCAGCTGTGGG-AGCTGAGGGTGGATTCTGTGCCCACTCGTGGCCCCCCCACTGGACATGGCTTCCTCCCCAGCAGGCCTCGACAGCAGTCTCTGGAGCCTCTGGCCCAGCTTGCTGCGGGTCGCTGCTGTTCTCTTTGTGT---CTCTTAGCCTGTGActtcaatgcagtcatctcatttctgggaatctatccaattctcaattgtgtaaaaagcttt-ataaacaaaaaaa s canFam2.chr12 3789655 691 + 75515492 cctgttgtcttctatctt------------attagaaacttttaaattacacataactcacatt--------------------------------------atatttctattgggcaa-----ccctgTCTTAGGCCATAAAGCATTGAGGTCACAGGTCATATAAGACTGGGATATTTCCCATTCAGAG--TGGTTCATTTCCATTTTTAATTATCTTAAAGCAGTCAGATCCTAGTAGAT----GGGCCGGAATCTGGATTAAGGGAAGAAATATCCTCTCCTTTTTGGACCAGCGTAAAGGTGGTGGTGC-AGCTTGTATTTTGGGTTAGGAGAGCACATTCAAGGGTACCTCCAATTGTGGGGAGGTAAACTGGCTCCTGAAACTCAGAGCATGCTGGAGGTAAAGCAGAGAAGCGACCAGTAGGAGAACTCACATAGGAAGGGTCTTGGGTTTGTGAAATCTGATCA-GCTATATCTAATTTCCAGTTCAAACTGTTTCTTTAATTCTCTTCCTTTCTCCCACACTCCTTAGTAAAGACTTCTTAAAAGTGAGCCTGGAGGCAGGGGAGGGAAGCTGAAGGAGGGGTCT-------------------------GGCATTGCCTCCTCCCT--------------GCAGGTCCTGGCATCTGCAGGCCAGCTTGCTGATGA-CGCTGCTGTTCTCCCAGTGTGTCTTCTTAGCCTAAG------AGGCAGTGACCTCACTTCTGAGAATCTATAAAATTCTCAATTGTGGGAAAAGCtttaataaataaaaaaa a score=1212 s hg19.chr6_ssto_hap7 2375635 24 + 4928567 gtgcattacagtttactatcttaa s canFam2.chr12 3790545 24 + 75515492 ATTCATTACTATTTATAATCTTAA a score=9813 s hg19.chr6_ssto_hap7 2375659 161 + 4928567 caaaatattggaagcagcagaaacatttagcaggaaaaactataaattatagactatgtactttgtgcatcattggggagccacttaagtgacttttattaaaa-cttatattaacaaagaagacaatagtgtcataataatttatttaaaaagaATTAAAg s canFam2.chr12 3790692 162 + 75515492 AAAAATATTGTAAGCAGCATAAACACTCAACGGGAAAAACTATAAATTGTGGACCATGCACTTCATACACCATTGTGGAGCTGCTTAAGTGACATTTATTAAAAGTTTGTATTAACAAGGAAGATGAAAATGTCATAATAATCATTTCAAAAAGGAATAAAG a score=11997 s hg19.chr6_ssto_hap7 2376097 557 + 4928567 AAGGAATTAAGGAACACACAATTATATATGTAATTGGTGACAATAAA---ATACAACCCCTCAAAAAGAACAAAAACAAAAACCTAAACAACAACAACCACCTAGGTATAAAGAAAAGACTAGAAAAAAATGTTTT---AAAATGAAACCATAACtgtattagg----gttctccagagaaacagaactaaaacctctctctctctgtctctctctctctctcatatagatgagaagacacactcaaaggagctcatataggtgagagagagattttaaggaattggctcacacgattgtggagattggcaagtccaaaatttgcaggg-aaaactggcaggcttggagac------aaaagttaatgtca--------------------------------cagttcaggcctaaaggcaacctggaggcagaattccctcttcctt--gggggatgtcag------------------------------------acccactcacatacgggagggtaatttgctttattcaaagtccatccatttaaatgttgatttcatct--------------------acaaaataccttagtagaaacatctagaataatgtttgaccaaatatttgggtaccat-ggcttaagcatactgacac s canFam2.chr12 3791214 555 + 75515492 AAAGATTAAAAGAATACACAATTAAATACACAACTGGTGACAATAAATATACTCCTCCCTCCAAAGAAAACCAA---AAAAATCTAGCCA-----------------------TAAAGACTAG-AAAAAATGTTTTTAAAAAATGGAACCATGATtgttttagtcagccttctccacaaaaatggaacca---------------------------------atatag------------------------------------------------agagaactggttcaggcaatcgtggaggttggcatgtctaagatttgcaaggtagttctggcaggc-tggagactcggagaagagttgcttctagtggagaagcagttgagaggcaacattccttctagttctagtggggaagcagttgagaggcagcattccttcttcctccatggggaagtcagcctttttctattaggaccttcaaatgattgaatgaagcacacccgcattacaaagggtaatctgctttagtcgaagtccactgatttaaatgttaatttcatctaaaaactaacttcacacacaaaaaaataacttcacagaaacatctagaa-aatgcttgacaaagtatctgggtactatgggcctagccaagctgacat a score=8332 s hg19.chr6_ssto_hap7 2376996 273 + 4928567 aaaattaaCTTTCACAATGATCTAAGGCTTACTACTTTAGGATTTGTTTTTGAAATACTTTTCTGTGTTTTCCAAAATACATAAAATAATAAAGATGTAC--TTATGATGGAAAAGGCCTGTGTAAACACATTTTAAAACACAGCCTCCTTGGGGTAGCCCCAGAGTCCCA------GGGCTCT------------CCATGGCCCCTTGGACACCTTTCACAGCATTCCTCACCTCTGTCTTCTACCATTATTATGCATGTCTGAATATGTCTTCCTTTGCTAAACATCAAAC s canFam2.chr12 3791769 271 + 75515492 aaaattaaccatcacaATGACCTAGGATTCAAT-CTCTA--ACTTACTTTC-AAATATTTTAC--TGTTTTCCAAAATACAT---ATGGTAATGATGTACCTTTATGATAGAAAAAGACC-TGTAAACA---TTTAAAACACAATTTTCCTGGAGTAGGGCAAGGGTGTCATGTGCTGGGTGCTTTTCTCAACCTGCCAATGCCCCCCCGACACCTTCCATAACTCTTCTCACCTC------CTGTCACTGTTATGC---CCAGGATGTGTCTTCCAATGCTAAATGGTAAAC a score=12404 s hg19.chr6_ssto_hap7 2377269 342 + 4928567 AGAGTTTTAAGA-CTGGGATTCTAGAAAGTGAGAGAAGGCAGGCGCAGAGGAGGCAGTGGGAGCCTGCCTGAGGGCATTAACGTCAGTCCTGGGCTATGTGCTGGCTCCTCAGGAC-CGCCCTTCTGAGGGGCACAGACAC--GTGAGTGGAGGGAGCTCATGTTCCAGTTTCTTTGCAAAAATCAACTTGATAAAGTTTTTCCTG-TTTTGTTAAAATTGCCTAAAATTTTTTAGCAATACTTCATTTGATTTTCTCTAATGGTTTCTGTCATTTCTTTGAGTTTTAATTTATTGCTCATGCTTTAACATCCCAGGTTATGTCTTGCTTAATTTAATGTCCATATa s canFam2.chr12 3792455 327 + 75515492 AGGATTTTAGGACCTGGGATTTTAGTTAATGACAGAAGGAAGATGT---GGAGGCAATGAGAACCTGTCTAACTGCATTCATTTCAGCTGCAGGTAATATGCTGATTCCTAAGGCTGTACCCTTCAGAGAGGCTTAGTTATGGGTGAGCACAGGGAACTTGTGTTCTCG---CTTTGC-AAAGTTAACTTGATAAGATTTTCCCTACCTCTGCTGCAATTGTTTAAAAAGTATTA------------TTGATTTTCTCTAATGTTTTCTGGAATTCCTTTAAGTTTTAATTTATTGCTCATGCTTTAAC-TTCCTTTTTACTTCTTCCTAAATGTAATATTGGTATA a score=3008 s hg19.chr6_ssto_hap7 2378684 88 + 4928567 gaaaatataccaaaatgttaacaatgtcttctatctttatttattggggttagaaattacttttgttttcttatattatgtatatttt s canFam2.chr12 3799991 78 + 75515492 gaaaaaatatccaaatgttagcaatat---------ttatggattgggttgaagattattttttattttcttatat-acgtataattt a score=2210 s hg19.chr6_ssto_hap7 2379411 46 + 4928567 TTATTTTTAAAAGAAGGAGAAAATTATTGAGTAAGAGAGTCTCTCT s canFam2.chr12 3800286 46 + 75515492 tacttttttaatgaaaagggaaGTTATTGAACAAAAGAGTGTCTCT a score=20357 s hg19.chr6_ssto_hap7 2379457 464 + 4928567 GCAGTTcttaagattgctgtcagaaccacctcaatactctttctgcagtctgtgctttgagcagcaatataaaaatgcagcattttat----gagcattaatagcagggaatgtaaattagcctatttgttttggctctgctttgcttctgatcattagaggccagcaaaaatagaatgagaactgcaaactccctcttgttcccggaagatctctccacaGCATGGCATATCAGTCAGATTTCTGGGCTGTCTCATCTCCGTCTCCGTAAGAAAGGATCTTGTTGGAAATACATTGAGGCATACACTGAAGCAGAGGCCCCATTGCCACCTGGGCAGAGGCAAGCCAGAGAAAACAGAGGGAAATGAAAAGAAAGACTTCCTGATATTCACTTCTACATACTGCCAGCTAAGCTGCGCTGGGTACCCAGAGCCCACCCACCACATCTACACCACAAATTCAACTGGG s canFam2.chr12 3800755 433 + 75515492 acagttcttaagatggctgtcaggtccatccaaatagcttttctgcagtccttgcttttggaagcaatataaaaaacaagtattttatttataagcatgaatggcagagaatgtatattagcttatctattttggctcagctttgcttccgatcattagaggcccactaaaataaattgaagattgtaaattcac-attgttcctggaagatctctccacaggatgacaTATAATTCAGAATTCTTGACTGTCTCATC-------ATGTAGCAAAGGATCTTGTTGGAAATGCATCAAATCATACACCACAGCAGGGGACC-----------------AGGT--GCCAAAGAAAAT---GGAAAATAGAAAGAATGGTTTCATGGCATTTGCTTCTACATGGCAA-AGCTGATCCATGCTACGTAGCTTGA----ATCCAACACAACCACCCTACAAACTCAACTGGG a score=15939 s hg19.chr6_ssto_hap7 2380244 521 + 4928567 CCTTCAGGCTTTATGtagctgattgaacacaacca------tctctgctcccagcagaaatcccaccaaaatgtgataaaggggttttaaaaggcaaggactgacaagaacaaaagcgggaggagaggagagagagagagagagagagagagagagagagagagagagaaactgactacacaatctaaataaataga-gaataatgatctggataacaaatagacaaaggtcttagcagataagagaaatttaaaggtaaaatgtcagtgggagaatcccagaagcaggctgatttcacatagcagaaccccag------taaggaatggagaaacgaagtat-cccaaacgtgagtgtgcaagag-gcctggaaccagaggctgatggtctatgtaagaagccactagaa--ccctagatctcctaactcaacgcacatggcagagtgaccccctatattccaccctaatgagtggtttgctcgctggagGCGTTGAACCATGCCACATCCTGGGAACCACAATGAAAATCATTTAA s canFam2.chr12 3801188 453 + 75515492 Tcttctgacttgatgtggctgattgaacacacacacatttgtctctgctcccaccagacatctcactaaaatgtaataaaggttttttaaaaggtaagaacctacaaagaagaaaacaaggaaa---------------------------------------------------ctataaaatctatataagtgaataaatcaagatctggccagtaaacaga--------ttagcagataaaagaaaaacaagagtaagttcacagtgggaaaatccca-aagcagcctgattgcacgaaacagaaccccagaagttgtaaggaatgaagataacaagtttgtctgaacgtagggatgcaagagagcctggaaacatacggtgaacatccgtgtaagaagccaatagaaagccccagatcccccaactcg-cttgcatggcagcatgactccc-acagtccaccctagtgaatgctttacttaccggagg---------------------gggagatgca--gagaactatctga a score=8730 s hg19.chr6_ssto_hap7 2380973 367 + 4928567 aaatagaaaataagtaataataaaagaaataaaataagagaagcaataaaagaaaagaaaaAGTCATTTAggattatgtaaaagcctgcctatcgaacagtaaggcttcctggtcccctccatgaagttggttctgagaactccagcagccagacttgccccaggccgattaatagagaaaccttctctggagaaactgaccagacaaggaaaaaca----------------cctaggaa-cacaggagtaagggggttcTGACGGATATTAAGCTACTGTCACTTGACTTCAAAACC-CTCTTccactctctccttc-ccagctggctccctcttaggtgtagagggaggtgtcagcactggagg---aagaagggatcccttccct s canFam2.chr12 3801641 319 + 75515492 aaatggagaat--------------------------------------------------------------ttaactaaaagtctgcatacaaaatggcaagacctccaggtct--tcctgcaggtcagttctgagaactt--gcagccagacttgctctcagaagaataacagagaaatctcctccagaacaactgatcagaccaaaaaaaaaaaaaaaaaaaaaaaaaCCCTACAAATCACAGCAGTAGGGGGGGT-TGCTGGTTATGAAGCTATTGTCATGTGGCTTCAATCCCACTCATCTAGTCCctcctttgccagctg-ttccctcttaggc--agagagagccctcagggttggaggcagaagaagggacttgctcctt a score=10371 s hg19.chr6_ssto_hap7 2381340 383 + 4928567 tgttggcctcccaatcctgccggcatcaccacagccgaggatcttcagccctgtagcaacagctggt-ccagcagcagtagcaagtcccaaactgtggttcttcctcactcccggcaaaggcctcttcccgtggcctcagtgataccagctcactggccaggctcctccttaggaaactgagttctagctccgtggggcc-atcctcccagattctcccattgaataatactgacctcttccctcagttccccaagactgagggagaggcagttgccccattcctgattcccacgcgttctacctctgcggtatctcagtgctc-tttttgtctttttagatctcaatatgtggttaacaatcctttatataaaattacctctgtc s canFam2.chr12 3802169 323 + 75515492 tgtttgctccccagtcctgtcaaca--------------------cagcacagcagtaacagctggttccagtagcaggcgctgctcccaaggtgtagttcttccacactcccagca--tgacccatcacaccacctcacagacaccaacgctggggctcaggccccactcagaggtctgacttccagctccacctggcctctgctccaagattctactatttcatgatcccaagcttctcccatgattcttcag---------------------------ccTG------------TCTACCCCTGTGGTCCCTCTTTGCTCCTTTTTGTCTTTTTGGATCTCAATATATGGTTACCAGTTCTTTACATAAAATTA--TCTGTT a score=30749 s hg19.chr6_ssto_hap7 2382027 889 + 4928567 cctctgtttaaatatttgga-tttttttctttcacctgactagaccctaaTACAAGGGTCTTCTGGAGAAACAGTTCAGCCCATTTGCACTATGGTGAAGCCCACTGAAACTTCCCCCCATCCCCACCACACACACCTGGAGTTTCCAAACAGCTTAAGATCTAACTAAGCCAAGGATTACTGTATCATTCA-----CAA------------AGCCCAAGCCCCaatttgagcagagaaagtttattattagaaagaattattggct-gtaacagg------ctaaaaagacgtgcagagaactccaaagaatgctgtagggccgcgggagagtacccaaagaaggacacacgtggaag--catc-cccaccccaaagctggattcagaactcaaggcagaaagtgtgcatgtgcccaccaggtaccagattatttccctgggatgcccaggccaaagcctgtgcacagtcatgagcaagcaggaaac-------TGGGG-----------------GGGTCGCGGCATCGGGAGCCCACTCACTGCATGCAAGGCCTGGGGCATGCAgggtccacgtcagggccagctcgctgggggaacgcatgctgtcagcacgcagctaggacagagaccaccggatgttcccacctggc-cactgatgggccctgccgcaggagcaacaagaatcacaaaccatagct-cccggaaccagagataaaagaaattctttcctctggcagtgtccctccggcgccctctactgagaaagcttaatattgtgctggctgcgaaggagaaccgcttaattcaatacagatcagttaagaggatggatttacggttgagaggcaatacattgataaGAAac-tagtcattatgggatgaaaaccactgacatgaaagacaggtattgaaaacacaagaattaaggaatataaag s canFam2.chr12 3802665 882 + 75515492 GATCTATTTAAATATATGGAGTTTTTTTCTTTCACTTGACTGGACCCTGAATGCAGGGCCTTCTGGAGAAAC--------CCAATCACACTATAGTGAAGCCCACTGAAA---------AAACCCACCA---ACACATGTTGTTATCAAACAGCTTAA--CCTA--CGAGCCGAAGATTACCATACCAgtcaaggtccaatcaggaaacagcagtcaaagccctaatttgagcagggtgagtttaatat---aaagaattattgacttgtaaggaggagtaactataaaaacataaagagaac-ctaaagcataCTTTTGGGCTGAGGAAGCGTACCGAAAGGATGACA-ACCAGGAAGGGCATCTCCCACTCCAAAGTTGGATTCAGACCTCCTTGGAGAGGACGTGGTTGAGCCCCTTGTGTGACAGATAATCTCACTGGGATGCCCAGGCCATA--------ACAGTTGTGAGAAGGCAGGAAACACGTCTTCGGGGTGGAACAGAGGCACCTAGAGTTG-GGCATTAGGAGCTCACTGGCTGCATGCAAAGTCTGGGGCATGCACTGTACCTGCCAGGACTAGCTCCTCAAGGAATTGCACACTCTCAGCATGTGGCTGAGCTGGAGCCCAGTGCGTGTCCACACCAGAAACACTGATGGGTTGTGCAGCTGGAGCTGCAAGAATCAAAAactgcagcaactcggaaccaga-atacg--------cttcctcccacaacgtccctcaagtgccccctactgacaaagcttaatcttgagcgggctgcaaagaagaa-----------atcagagctcaggtaagaggatgcattctcagttgagaggaaatacactgataaccagcataGTGACCATTTCGTg----ccactaaaatgaaagagggggattgagcatacagaaattgagaaacttcaaa a score=2869 s hg19.chr6_ssto_hap7 2383215 116 + 4928567 gaggaaatttagagaatgcaaagagccaaacaataaaatccactgcaattaatattttcataaacataagagacgatattttctccatggtaaaa-----------------gaaca--------------------cattattaaataaaaa s canFam2.chr12 3803547 139 + 75515492 gagacag---agacaattcaaagaactaaa-aataaaacccac-------aatattttcataaaaataagaga---tactgtctccatgaaaaaatgaaaggctatgaaaatgaacagttagagatctaaaaagcagcatttttaattaagaa a score=3878 s hg19.chr6_ssto_hap7 2383331 48 + 4928567 ATTtaaagttgaagaaatcttctaaaaagaagcaaaggataaagaaat s canFam2.chr12 3803924 48 + 75515492 atttaaagttgatgaaatctcctaaaaggaagcaaagaataaagaaat a score=12897 s hg19.chr6_ssto_hap7 2383688 304 + 4928567 tagatggtatagaaaatatatgaaaattagatcat----ctggatgaataggaggatttctagaaagaatagacagagggaacagaagggatgaaattatcaaagaaataattcaagaacttttctcagaactgagagatat--ggttccaaagtgagatagacctcaagtgtctaacagaagtgtctaacaaaaggaatgaaatccaaggcatagtaccataa-ttttaaaaatactgaggacaaaaagaaaaatcccaaaa---------ttggacaaaaagaaaaaaacaggtcacataaaaaagatcaaaactcaa s canFam2.chr12 3803972 298 + 75515492 taagtgatacagaaaacatatggaaattagattattaatctggatgaataacaggatttccaaaaagagcaaaggcagagaatagaaggaaggaaattatcaaggaaataattcaagaacattcctcagaactgagagtcatcaaattccaaactcagagagaac------------cttgaatatctagcaaagtgaatgaagtcaaaagcatatcatcatgagtcctaaaaatgttagggacaaagagaaaaactccaaaagtcttccaattgtttacagagaaaaaa----------caaaaaggataaagactcag a score=9432 s hg19.chr6_ssto_hap7 2384359 256 + 4928567 tagctgaggacttttcaaca-gtagcactggaagctgga----agatagtggagcagtgctttcctaatttaggtgtaaattttacaacttggaattttattttcagtaaaactattaatcagatgtaatcataatataaaagacattttcagacaaaatttcaaaaattgccctcccttgc-----ccctttccttaggaagtt---------------ccatcaaagtaagggattagatcaggagagataaagatgtgggatcctccaaagagtgagg s canFam2.chr12 3804270 279 + 75515492 tcaccagtgacaagtcaacaagtgacaaaggaggctatatataagacaacacagcaatgctttcgaaagtcagatgcaaattttgcaactgggaattccatcttcagaacaattattagccaggtatagcagtgaaataaa-gacatttgtagacaaagtcttaaaaacttctctctctctctcttgcccttacctcagggagttattggagtgtgtattccaccaaggtgaggggttagatcaagaaaaa-gacgtggTGGGGTCCTCCATAGAGTGAGG a score=3050 s hg19.chr6_ssto_hap7 2384624 64 + 4928567 atcccaggaggttgctgtgtaggAGAACTAGGGATCCGCAGGTCCAGATTAAAATGGTTTGGAg s canFam2.chr12 3804805 58 + 75515492 attccagaaggcagctatgcaggagacctaggaatcgacaggtccagattgaaacag------g a score=14332 s hg19.chr6_ssto_hap7 2384992 364 + 4928567 GGCTTGGGGCCAAAACCTCAGGGATTAAGAAAATTCCTTTACCTGGTTACAGAAAGAAATTACCAAGAAAAAGAGGGAATTGATTAATTGTAATACATTAGACTGCAGAGAAAAAATAGACTTCTATAGAA---TCTGCTGACAAATTTGTGATAAATTCATAGACAAATGATCAAAAGAAAACCTAGTAGATCTgtatagttctggatatcattccataaagcccagcttagaacctgtgccctcagcccttataaagatttcacaagctcttaataccctttgtaaaatgtcttcctgtta-atttacctagcgtaatctctagttgctgcactgaaccctgactgatataACTTGTTATTAAGAA s canFam2.chr12 3804863 336 + 75515492 attctggggccaaaccctcagaaataaagaggattcctttacttggct----------------------------gaact---caattatcatgcatttgaatagagagaaaaactacaccgttggagaagaatttggtgacaaatcagtgataaaatcctagacacgcgatcaaaggaaaaCCTAGTAGATCAATATTGTCCTGGCTGAC-TACCATAAGGGTCAGCTTAGAACCTGCTCCTTCAGCCCTTCTAAGGTTTTCAAAAGCTCCAAATACCTTTCACAAAATTCCTTCCTGTTTTATATACCTGGATGAATCTCTATAGCCTGTACTGAAACCCAGCTGATGCAACTCATTATTAAAAA a score=6154 s hg19.chr6_ssto_hap7 2385356 261 + 4928567 ACAGGAAGATAAAAACTAATTGAGCATCGAAGTGCTTTTACTTCTAGGAAGAGAGAATTAGGG---GTTGGTAC--CGGACTATAGCTTTTGTTCTGTCTTTGGCTTTTTAAATTACATATCTGTAATTTATATACACACACATATATATTTGGCTTTTAAAATTACATATCTGTATAAATCTGataaaaattttaaatagt----taaataaaaacttatttaGGAGATAATATAT--TAGAATACTAAGATGAGTGCTGAGTTTAAAAAA s canFam2.chr12 3805401 225 + 75515492 ACAGAAAGACAAAAGCCAATTGAGCACTGCACTG--TTTGCATCCAA-AAGAGAGAAGCTGGGAAAGGCTGTACGAAGGACCACAGCTTTT----TGTTGTTG-------------CATAGC------------------------ATTTTTGTCTTTTAAAACTATATA-ATGTTTAAGTTTGGTAAAAATTTAAAATAGTCAAGTAAACAAAAACTCAGGTGGGAGATAACATACGGTGAAGCACTAAGACA--CACTGAGTTTAAAAGA a score=34008 s hg19.chr6_ssto_hap7 2386234 942 + 4928567 AATGTCAATAAAAATAGATAAA------TGAATAAATACAGTTAGTCTTTTTTTTTTAATGGCATCTGGA-CATTCCTACATTCTGGAAGATTTACAAATACATAGTGGGGATACCTCTCATAAATGTATAAGCCTCTCAGTTTTTCCTTCCAATGCATTGCAGATTGTCTTTATTTAGCCCTTTCCCCTGGGAACCTGAGACTGAGAGCAGTGCAAGCTATGCTTTTTTTGTAAACACAGCAC----------------------------------------CTCACATTTCTAGAAGACAACCCTAAGTAAACTTCAGGGCCCTACGTCGGTCACCATTCCATCTGCTCTTCTCTGCTCTGATTCTTCCTATCCCT-CAGAAACCCAAGGC------CTCCTTAGCCAAACGGAGCTGCTGTGGTCGCAAATAGCCTTGTGCCCCTGGGAACCTGTGAGATGCAATATGTCGTCAGTCTCCCTCAATCTTGGCCTGAGTCCAAGAGAAAGGCAGCTGCT-CTGAGGTTCGAGACTCTCCAGTGACTCAGCTCTCTAATTCCCAGTACTCTGTGCATATGCCCTCCTCAATTCCATCTCCTAGACT-TGCCAGATGTAGGTCGAGTCCTCAAAGATGAGATAACCAAGATGCAAAATCCTAAAATCCTCCATTAAGCACCTACTAGCTGCAGAGGCCCTGCTGGGGCCCTGAGGGAGATGTGTGTGGCAGACTGCA-GGCCAAGTAAGTCCTTCTTTAAGGCTGGTGTCATGAGAATTACTCAATGCCGCCTCCTGCTGGGGAAGGACACTTCACCCCTTTTATGGAAGCCCAACGGGA----------AGGACTCATGGGACAGGGCAGG-------CTGCCCTGTCTCTTTTTTAAGCAGTCACTGCAATCACACATGCTCACTAATCCAGTTCACTAAGGTAGGAAGCCACAATAAAGTTTGGAGCCAAAATTGTAGATATAAAGAGAGTTCCTTTATCTGGAATGGCCTC s canFam2.chr12 3806278 943 + 75515492 AATTTTAAAaaaataaaataaaataaaataaataaaaataaaaAAA----------TGATGGCATCTGAAACATTCCTGCAC-CTGGAAAATTTACAAGTATGTAGTAGGGACAC-------------------------------------AGTGGACTTC----TGTCTTCATTTATCCCTTTTCCCTAGTATCTTAAGATTG--------GCATCCTG-ACTTTTTTTGTGAACATGGCACATTgtgctcgctttggcagcatatatactaaacatggcacCTCCTATTTCTTACAAACA--CTCAAGTAAATTTCCAGGCCCCACATTCCCCACCATTCCAACTGCTGTTCTCCTCTCTGATAGCTCATACCCCTGCAGAAACCCAGGGCTCCCTTCTCCTTGTGCCAATGAGGCTGCCATGGTCCCAATTTAGCCTGTGCCCCTGGGAACCAAGGAGATCCAATAGAGTTTCAATCGCCCTCAGCCTTGGCTTGTGCCCAGGAGATAGGCAGCTGCTCCTGAGGTTTCAGACTCTCAAGTGACTCAGCTCTCCAACTTGCAGGGGTCTGTGCATATGCTCTCCTCCACTTCATCTTCCAGACCATGCCAGATGTTGGTCAAGTCTTCAAAGATGAGATAACCGATAC-TGATGTCCTAAAATCCTCCACCAGCTGCTGGCCAGTTGCAACAG-CCTCCTGGGGTTCTGAGGGAGATACTTGTGGCAGACCCTACAGCCA---AAATCACTCCTTAAGGCTGGTGCCACGGGAATCACTTAGCACCAGCCCCTGCTGGTGAAGGACACTTAGCCCTTCTTTCAGAAGCCAGAGGACACGGAGGAGTCAGGGCACATGTGACAGGTCAGGCACCCCACAGGCCTGCCTCCTCTCTAGGCAGTCATCGGGATCACACGTGATCGTTGGTCCAGCTCATTACGGGAGGGAGCCACGACAGAGTTTGGGCCCAAACCT-----CAGGAATAGAGTCCCTTTTCCTGGGTCAGCCCC a score=10316 s hg19.chr6_ssto_hap7 2396958 424 + 4928567 CCAAATACATTTTAACTTCTTTCCTCTTTCCATT-CCTCTTACTGTACCCTTCTAGGATTCCCTGGGTTTTGTTAAAAGCTTCTGGAACTGGAATGTA--GCAAATGAATGTTCCATTTAACAGGCAGAGAAAGAGGAGGTGGGCAAATCACAGAACCAAAGT-GCAGAGTGGTGAAGAGCTCCAGTTGCGTGCAGGGTGGGGTGGCTG-CCAGGGCCCTGGTG--------CCTTCAGTCATTAGTTCTGCAAATGTTC-ATGAGTTCCACCAGTGGTGTCTGCCCAGCAGAGAGCAGGAGCAGGGGTGAGGGTGAGGACAAGAGACAGACAGAGCCTGGAGGGGCAGTCAGCTGCACAGGAACGACCTTCTGTGCAAGCTGCAGGCTCTGCACCCAGCCAGTACCTGAGCAGGGTAGAGGTCTGAT--GAGCTGACTT s canFam2.chr12 3808448 396 + 75515492 CCAAACATACTTTTACTTCCTCCCTCCTCCTATTTCCCCCCACTGGAACCTCCCA--ACTTCCCAAGTTTTGTCAAAATCTTCTGAAACTGGACTCTCCTGTGGTTGAAT---------AGCAGACAGAGGAGGAGGAGGTGGATGTGAAGCAGGAGCAAGGCCTCAGGATGGCCACGGGCTTGAAGGCTGGGCACCATAGGTGGGCTGGACAAGGGGCTGGTGTGTGAGCTCATGAAGTCATTGCTTCTGCAGACCCTCTCTGAGTCCCAC--------TCTGT----------------GAGGAGGTGGGGG-------AAGAGGAAGGCAAAATCCAGAGAGGCAGT-GGCCACACAGAAATGACCTTCAGCGCAAGTTCCAGGCTCTGCAGC-AGCTGATAATTGAGCAAGGAAGTGTTCTGACTAGAACTGACTT a score=11451 s hg19.chr6_ssto_hap7 2397382 275 + 4928567 ATAGGATGGGCTGGAGGACGCAGAGCCTGTGGGTATGAGGCCAATTAGGAGAGTGCTGTCACCACCCAGGCAGGAGGCCATGAACATCCCCATATGAGAAAGAAGGGCATAAACAGGAAACAAATTTAACAATTAAATAAAAGCACCTCCCTCATGCAGGAAACTCGCCCTGTGCCAGGCCCTGCAGAACCATCTGCAGAGTCATTTCCTCTCTTGGCAACTTG-----------GCAGCCCCTAGCAAACACAATGCATCTTGGCTTGCCATCAGTGC-------AACCCTT s canFam2.chr12 3809035 275 + 75515492 AGAGGATGAGCTGGAGAAAAGGGAGCTCGTGCGTATAATATCAATTAGGACATTACTGTAACTACCCAGGCAAGAGGCCATGAGGATCCCCAT--GAGAAACAAG-----AAACAGAAAACAAATTTAATAATTAAACAAAAGCACCTCCCT-GTACATGAGACAGGCAAGATACCAG-CCCTGCAGAG---------GAGTCATTTCCTGTCAGGGTGACTTGCCTGGCTGAAGTCATCCCCTGGCAAATGTAAAGCACCTTAACTTACTGTCAGTGCTCCAAACAGCCCTT a score=19901 s hg19.chr6_ssto_hap7 2397819 499 + 4928567 ctaatgacctcattttaacttgatgacctctataaagaccctatttcctaatcagatcacattctgaggtaccagggattaagatttcagcatatcttttgggggtgggggacaca-------------------------TGGTCACATCCTGAATGACTATAGCTCAAACAGGTCTTTGTTAGGTGAAAATAACAGGTGGAAAAATCACTGAGCACTTCACCTTATCTCAAACTTATGACTTCAAAATCTCTACAGTGGACTGGTTTCCCAG-CTGACCTCACCTTACGTGGAGTGTTGCCCAATTCACACTCTCCAG-CCTTCCCCACACTGACTTTAACTTCCACATGTTCCTTCACTTCATTCCTGCATA-AACCT-----GGGTATGGTCCCTTCATTGTCTCTCAGTGATGTGGAAAGTTTTCATGATGAGTCTACCCTGCTCTC---TCTAATACAAGTAGGATACAACAAACA--GCATGTTAAGTTAGCAAATTTGACATTAACGTCTATCTTAAAAAGTGGCCAAC s canFam2.chr12 3810057 508 + 75515492 ctgatgacctcattttaactcgattgcctctgtaaagatcctctttccaaataagatcatattcttaggtactggcagttaggacttacacatatattttt----tgggagacatagctcaatccataacaGGGTTGAATATGGTCTCACCCCAAATGAGTATAGCTCAAACAGGCCCT--------------ACCAGGTAGAAATATCCCTGAGCACTTCATTCTATCCCAGTCTGATGACTTCAAAATCTCTGCAGTGAATTGGCTCCCAATCCTAGCCTCGGTTTACCT-GAATGTTGCCTAATTCACACCCTCTAACCCTTCCCCCAACCTACATGAGCTTTCACATGTGCCTTCACTTCATTCTTCCACACAACCTGTCCAGAGTATGTTCCCCTCCCTTAGTCTCGGTGATGT-TAAAATCTTCATGGTTAAT------GGCACGCATATCTGATAAAAGTAGGAAACAATAAATATGTCATGTTAAGTTAGCGAACTCAATGT--AAGTCTATC-TAAAAACTGGCCAAC a score=1897 s hg19.chr6_ssto_hap7 2398636 21 + 4928567 GTGGCCAACAGAGGAGGTAGT s canFam2.chr12 3811335 21 + 75515492 GTGGCCAACAGAGGAGGTAGC a score=11291 s hg19.chr6_ssto_hap7 2398657 208 + 4928567 AGT----TTTGTCACTAGCTGTCATGTGGAACcccaggacctagcctttggtttcaaatactgtttttcatttatagaaactaggaccccttagaatgcaaggcttaggtgacaactgattccatgtctcagagaaggaaagaatcaggacaggacttgaatgttctgttgttgccatagagcaaggatgacttcaagaatgtgaaggacag s canFam2.chr12 3811544 209 + 75515492 AGTAACATTTTTAATTGACTCTCGTATGGacacccaacaccttgccttt--cttcaaatactactcttacctgaaagaaactaggaccccttagaatgcaaggcttggatgataacagattccatatcttagggaagagaagaatcaggacagaacttgaatgttctattattaccagaaagcgaggatg-cttcaagaatagcaaggaAAG a score=17520 s hg19.chr6_ssto_hap7 2399240 367 + 4928567 TTAAAAAGACAAAGGAGCCAATTTCAAAGAGCTCCCATTGTTCAA--GTTGACAGTCGGGCATGAAAGAAAGAAGATGGGGGGAGGAATGATAATTATGGTTAATTGAAGTAAATTGAATCTGTGGCAGGCCATGAAA--TCACGATAATAACAGATAAAAATTCACATAAAGGGCACAAAAGATGAC-TGTAATAGAGAAGAATTGAGttttaaaattttattttaataaaaaGGGAACTATTCATTTTGTCTCTTCTATTAATTATGTGTCTGTTTATAAAGCAAAGATAGGTGCTTGCTTTTGTCTGTGTAAGCAGAAAACCCACAGAGAATGCTGAGAAAGCCAAGTAGCCCtgttatagtaggcagc s canFam2.chr12 3812708 358 + 75515492 ttaaaaggacaaaggagtcaacttaaaggagctctcattgttcacctgaagacagttgaacctgaga-agaaaggatgagaagaaaaatgataattggggttcattgaattaaatTAAGGCTGTTGAATGCTGTGAGATTTTACAATACTCAAAGATAAAAGTTAATATAAAGTGCACAAAAGATGGCTTGTAATAGAAAAGAAT---ATTCTGAAAATTGATTTTAATAAAAAGGGAATTGTTCATTTTGTCTCTTGTATCAATTATGTGTCTGTTTATGAAGCAGAGAGATGTGC--ACTTTCATCTAGGTAAGCAGAAA--------AGAATTCTCAGAAAGCCAAGAAGCCCCACTGTAAATATGAGC a score=17183 s hg19.chr6_ssto_hap7 2400645 336 + 4928567 TTAGCAGAAATAAGAACGTCTGACATGAGATGATGTCAGAGGCAATAATGAAAGAGAAGGGAGTTTCAATAGTAGGTACCAAGACAATAAATTAACCAAAAATATCACTAAAAAGAAGAGCTAACCAAGTCAACCCAATT----CTTCATCTTCTAGAATATTGAATATTTAAATTGCCCTACCAGTTATAATAAAATACAAATAAGATATGCATAAGATTTAATACTGCTAACAGATCAAGTCAGTATATCATAATGAGAGAAAAATTCATTATGTAATAATG------GTCAAGAGAGATTATTGAAGTGTGTTATATTAGGGGGAGAAAATATGTTGTGAGAt s canFam2.chr12 3813066 320 + 75515492 TTGGCAGAAATGAGAATGTCTGACAAGGGGTGGGGTCAGACGCAACAATGAAAGAGAAGGTGGTTTCAATAG----------GAAAATAAATCAACCAAAA-CATCACTGAAAAAGAGAGCTAATAAAGTCAAGCCAGTTAGATCCTTATCTTCTAGAAGATT------CTAGATCGCCCTGCTAATTATAACAAAATATAAATAAAGAATGCATCAGATTTAATAATGCTAACAGATCTAGTCAGTATATCATAATGAGAG-GAAATGCATTATGCAACATTGCATAATGTCAAGAGAGATTTGTTAAGCATGTTATATTAAGGAGAGAAAAT--------GGAT a score=7055 s hg19.chr6_ssto_hap7 2401292 220 + 4928567 CGCAAAATTCTAAAATTTATGTAAAAGATGTGTACCTAACTAAAAACAGTTATATTcctcagtgagatataatttcacacccactaggctggctatagtaaaaagagagataataagtgttggcaagggtgtggaaaaattggcattctcatgcacagctgttggaca-gtgaaatggta-cagcactttggaaaatagtctgaccattcctccaaaggttg s canFam2.chr12 3813386 204 + 75515492 TGCAAAATTCTAAAATCCATGCA-----------------TTTTGAAAGTTTTACTCATcactgagatacaatttcacatccatagtcccggctata-taaatagagtaataataagtgctgacaagaacatggaaaacttggaaacttcatacacagctggggggaatgcgaaacggtgccatgggtttgcaggacactcaggcaattcctcTGAAGGGGG a score=-463 s hg19.chr6_ssto_hap7 2401753 148 + 4928567 tgaaaataaaaagaaataaagtactgatatgtgctacaacatggatgaaccttgaacacattgtgctaaatgaaagaagccagtcaaaacgatcccatgttgtattattccatttatatgaaatgtacagaataggtaagtccttaga s canFam2.chr12 3813736 89 + 75515492 GGAAAATAA--------AACATACTG--ATGTCCTAGAA---AGGTAAACCAAGAA-------TGGAAGAGTAAAGAGAAGAATGAAGA---------------------------------------AGTACATTTAAATCCATAGA a score=9 s hg19.chr6_ssto_hap7 2407644 24 + 4928567 TAATAATAATAATTGCATTCGTAg s canFam2.chr12 3813955 24 + 75515492 TAAATATATAAATTAGTCTAGGGA a score=6186 s hg19.chr6_ssto_hap7 2408621 142 + 4928567 atcaata--aTGTGTTTTAATCAGTTTGGATTATTAAATCCATAAATGTCTATGTATTAGTTGTGTACATAGTGTATAAATAGAAGAATATTATTTAATGCTTAAATGCTATTTGTTTAATAAATTCATAAGAGAAACAAAATT s canFam2.chr12 3814249 143 + 75515492 ACCAATATTAAATGTCTGCATAAATTTGGTTTATTAAA-CCATAAGTTTTTACACCGTAGTTGTGTAAACAGCACGTAAGCAGGAGAGTGTGTTTTGATGCTTAAATATGAATTGTTTAATAAATTCATAAGGGTAACAAACTT a score=7287 s hg19.chr6_ssto_hap7 2408767 347 + 4928567 TAAGTAGAAATACCTTAATGACATTTAGACACTGAGAGGGTGTCCCAGGAAAAGAGAGGGGCACCTGAGCTTGAAGGCTGGT-GACAGATGTTTAAGGGGCCACTAACATACCAGATAGATTTTATCTTCCTAGACTCATCATCTTTGCACCTATTAATCATGAACAGAGTTAGTTCTCCTGAATTCATCATATGACAATGTCACAGTGGACAGAGAGACTCAA---------------GAGAAGTGAGTTTTGACTGGGTGAGTCAAG----------------------------AGGGATTA-----------TGGTCCTGAGTAGCCAGGGAGTGATTTAAGTACGGGATTCAGAGAAAGGAGGGACAGAGGAAGAGGTGCTA-AAGAAACAACCCTCT s canFam2.chr12 3814582 364 + 75515492 TAAATAGGAGTGCCTCAA-GTCCTTTAGAC----AAAGGCAGTCCCAGGAGTGGAGA-----CCCTGTAGTTGGAAGCTGGGAGACAGGCAGGTAAGGGTGCACTAACAAACAAGGTTGGTTT--TCTTCCTAAACTC-------------------ATCACGAAC--AGTTAGCTCTTCTGAATTCAGC--ATTACAGTGTCCCAGTGAACAGGGAACCCCAAAGCAATGGGTATAAGGAGAGGTGGGTTTGGGTGGGCAAAGTCCAGTGCATGGGATGGGCAGTCAGACCCAGCCAGAGGTGAGAACTGATGGGTGGTCCTGGGAAGCCA-GGAGCAGTTTGAGCACAGGAGT--GGAGAGGGAGGGGTAGCGGGA-AAATGCTACAGGACACAGCTTCCC a score=6270 s hg19.chr6_ssto_hap7 2409447 133 + 4928567 CTGCATCAGTCACAACTGCCATCCTGAGGCCAAGAAGAACTAAATGGTCTCAAAATTATTTCACAACTTGTTGCTACCACCTTTCCAC-AGTGGGGCTTGTCTAGCCAG---------AGAATCAAACATTAATTCACTTTAg s canFam2.chr12 3814946 143 + 75515492 CTCTGTCAGTCATGAGTGCCATGCTGAGGCCAAGAAGGACGAAATGGCCTGGAAACTCTTTCACAATTTGTTTCTCCCACATTTCCACAAGTGACGCTTGCCTAGGTGGGCACCGCCTGGGATCAAAACTTATTTCACATCAG a score=23068 s hg19.chr6_ssto_hap7 2409730 776 + 4928567 CATACACATCATAGAATTCTAAGAACTGAAGTAACCTTGTAACA--TTTAGTTCATGGTAAATACATAA--AGGAAACTATTATTATTATCACCCAACAGTGTGTGTGTAAGTGAAAAATGTCTTTTTTACTGACAAATGGCTAAGTGAATGCTGTTTGTTTGAGGGATGAAATATTTAAATGAGAAGCCAACTCAACTCTTCCTCTTGATCTTAGAGTCATTCTCTCAAGTGTAACTCCCAGTGCAAAGCATCACATCAACTT-ATCAATCGACTGTGATGTCAACTACAGCCTCTGCACCAGACCAGCCCTCCTCTGTGGGACTAAGAACTATCCT-----GTGGTCCTGCCAGGACTGCCTCACTGGGACAACACACTGCATTAGGATCTatcccttacgatggctcagggttttccagtctctaaggcaccttatcattatcttacctaaact-tcctaataatcctgtgagggaggctggacatctgctttcatcccatgttacagatgagaaaacgaaggtccacagaggtcaatgacttgcctaaggtgacctggcacagaaagttgtgtgg-----cagaaggggaacctctgtttcctaacttcTGGATAAGCGC---------------------CCTCCTAGGATAGGAGAAATGAATGACTCTTGCTACTCCAGCCACCACTTCCACTAATTAACCA--------CTAATAAAAATGTAAAAATCAGTATGCCAGCAGTAGTCCCTGTTGCAAACATTAGGACCTTTCTCATATCACAGATTACTGAAGACATTCCCTCTCTTTttgtt s canFam2.chr12 3815851 766 + 75515492 CAAGCACATCCTACAATTGTTGGAACAGAAATAACCCTGCAACACATTTCGTCTGTGGTAAATACACAATAAAGAGGCTATTCCTATTACCGCCCAACAGTATGTGTGTAAGTCAAGAACATCTGCCT-------------------GAACACCGTTTGT---------GAAATACTTAAATAAAAAGCCAACTCTCCTTT----CTGGATCTTGGAATAATTCTT--GAGTGTAATTCCCATTGGGAAGCACCACGCCAGCCCCAGCCATCAACTGTGAAGTCAGCTGCGGCCACGTCTCCAGACCAGCCTCCTGCTG--GGGCCCAGAGCCGTCCTTCTGTGCGGTCTGGCCAGGACTGCCTCGGAGGGACTGTGGACCGCACTGTAATCAGTGCTTTGCAGTGCTT--GGGTTTCTCAGTCTCTCCTgcactttgtcatgatcttaattctaccagtcaaacaaccctgtgagacagatagcatatctgcttttcgtgctctttagagatgc-aaaactaaggtccacagagttaagtggc------GAGCTCCCATGACAGAG---GCCATGTGGACACACAGA-GGGGAACCTCGACCTCCTGGCCTCTTAACGGGTGCACTTCATGCCACAGCACCTTCCTTCCTAGGAGCAGGGAAATGA----CGCCTGCTACTCCAGCCACCACATCTACCAATCTACCAATGAATGACTACAAGACGCAGAAAACTCATTACACTGGCAGCAACTGCTCCTAAAAACCTTGGGACCTTCATCATGTCACCAATTACTGA--CTTTTCCCTGTTTAGTTGTT a score=74205 s hg19.chr6_ssto_hap7 2461195 1823 + 4928567 GGCCAATCGGGAACGGCACGGGGGCGGGCTCGCTCGGCGCGAAGTTCGGGCCCGGGAATTCCGAAGGAGGGGTAGGCGCTGCCCGCGCGCAGAGGCCGCGCCCCTCCTGGCCCCGGCTTCTTGGCTGTCAAACAGATGCAGCAACGTCGGCTCCTGCCGAGGAGCCCAAGGGGTCCCGGGATCCGCCGCACAGGCT--GGCACTGCTTGAAGAGGAGGCTACTCGGAGACTGCGCCGCGCGGGTAGATCCGAAACGGGGCTGGGGCGGAGTGGGAAAAGGCCGGGTATGCCTTGCATGATCGCGGGGAGCTCCTTCCTGTTTTTATCCCACCTAGAGAAGCCGGGAAGTAGGGGTTTAGGTCCAATTTGTTGGAGTACTTAAGGACTCGTTTGCACTTTCTTTTGGGGGATGACAGTGGATTCATTGCCCTCGGAGGTTCAA-----CCAGTTATGAGTGAGGGATTGGCCAGAAGATCGGGGCG---CAGGCAAGCAGGA---GTGCTCTATTAGGATAAGCAAGTTTGACAGGAAGAAGCTACTCTTCTCCGAATTACACAGAGGTGATGTGTTCGTATTGCACGTAGACGTGTGTATAACAGGACCTCCTTCCCCGCGCCCCGCCAC---CCCGACACACACAGGAGCTGCCTAAAGTATCCTTGCCTTGCA--GATTGGAGGCTCCCCAAATATTTTG--CGATCTGAGGATCCAGCTCAAGTGAGGTGCCATAGGACGTGTTCCTGAGTTTGCATTGCACGGAGACCTTCCTGGAATTTTTCATTTGCAAGTCGGCTTAACCAATTT---TGCATTGAGT-CCTAGGCTGCTTGCACTCTGAATTTGGGCTATTCAGGT----------------------------------------------AG--TGTGCTCAAAGTTGAAACC--GCATACAGCACAACTCAAGTTTGCATCAGACTGGGAAGCGAACTTAAGCCAGCGGTGCGTGGCCCAGGAGTGGGAAAGGAAATGGATGCCTGAAGTGGAAGAGGTGGTGCAGAGGGGGCACCGCCCATGCTGCCCTGCTTCCAACTGCTGCGCATAGGGGGCGGCAGGGGCGGTGATCTCTACACCTTCCACCCCCCCGCCGGGGCTGGCTGCACCTATCGCTTGGGCCACAGGGCCGACCTGTGTGATGTGGCCCTGCGGCCCCAGCAGGAGCCTGGCCTCATCTCTGGGATCCACGCCGAACTGCATGCCGAGCCCCGGGGTGATGACTGGAGGGTCAGCCTGGAAGACCACAGCAGCCAAGGTGAGCATTAAGCAGGGCAGCTTTGCCCCTGGGTGGTTGAAGCGCCAGGCTGGAATGAGTAAGGT-CTCCACAAGACCCTGCTGCCTGCCTCCCATACTCCC-ATCAGATTGGATGGATGGTCGTGGTCCAGACCTTCATCTTCCCACCAGAAGTGTGCACAGTCAGAAGCTCTCTGCCAGACTGACCCTTTTTGGTC-CCGTTTAGCT---------CATACAGGACCTGGGA------------------TATCATCAGAAAGATATCACAGTGGGGATGTTCTGAGGCCACTAGAGGCCAAGTTTAGACTTGATTCAGTTTCCAGCTTTGCTGAGGCACTCTGTTCCTGGGTTAGGGCAGTTCTATGTTGAATAATGTTTTTAATAATCTGGGCAT--GTCTTTCTCCGTGACTTG-AGGCA------GTTAGCCTCAGAAAGCCTAGA---------------TTCACATTTGAGTTTTGCCACTGCCTC------------------TTGGTAAAGTCAGCTGTAGGAGTGTTATGGTTATTAG---ACTatagtagccaacattcatctagtgcttactgttatgagccaggccctattttaagtgtattgaatgtaggtgg-tactaatattatcctcattt-acagtaaaggaaaatgaggcacaaa s canFam2.chr12 3858689 1874 + 75515492 GGCCAACCAGGAGGGCC---GGTGGGGGCTCGTC--GCTCCGAGCTCGGGCCCGGGAACTCGGAAggcgggccaggcgctgcccgcgcgcggaggccacgccccccccccccccggcctccccgctgtca--------------------------------------------ccccgcggccgc-gcgcgAGCTCGGGCACTGCCTGCGGGGGACGGCACGTGGAGGCTGCTCGCGGTAGGTGGGCACCAGGCCGGGCACGGG------AGGGAAGGCCTGGGGCGGCCCTGCCTGACCGCGGG-AGCCCCTTCCCCTTTGCGCCGCGCCCGGAGAAGCCGGGAAGCCGGGGCTTAGCTTCGCTTTGCTGGAGAACCGAGGGAC-CGTCTTCACTGTCTGTTGGGGGA---CAGTGGATTCGCCTCCCGCTGGGGTTAAAGGGAACTGGTTGTGAG--AGGGATTGGCCTGAAGGGCGAGGCGGCGCGGGCGAGCAGGACGGTTACTCGATTTGGATAAGCAAGTCTGATAGGAAG---CTTCTTTTCTACAAATTACA--GAGGTGACAAGGTAGTGTGGTACAGAG------------CAGGAA----TCCCACACACCCATCTACAGACCGCATTTCCCTGGGAGGCGCCTAATGTGTTGTTGCCTTGCACAGATTGA--GTCTCCTGAATACCTGGGGCAGCCTGAGGATCCGGCTCCACCAAAGTGCCACAGGACGTGTTCCTC--TCTGCGCTGCACTGGGACCTTCCCCGAATTCTTCGGTTGCAAAGCTGCTTGACAGTTTTGTTTGTATCCCGTGCCTAGGCGCCCTGCACTCTGAAGTTGCACTACTCAGGCCTGGGTTCTCCTCTGAGTTTTACCACTGATCCCTGGTACAAATTCAAGCCTGTGCTCAAAGTTGAAAAAAAGCACAAAGCACAGCTCAAATTTGCATCAGAC-AGAAAGTGAACTTAGGGCAGCG-TGCATGGCTCTGGTGTGGGACAGGTGATAGACTCCTGAAGTGGAAGAGGTGGTGCAGAGAGGGCACCACCCATGCTGCCCTGCTTCCAGCTCCTGCGCATAGGAGGAGGCAGGGGTGGTGATCTCTACACCTTCCACCCCCCTAACGGGGCTGGCTGCACTTATCGCTTGGGCTGTAGGGCCGACCTGTGTGATGTGGCCCTGCAGCCCCAGAGGGAGCCTGGCCTCATCTCTGGAGTCCATGCGGAGCTGCACGCTGAGCGCCGGGGTGATGACTGGAGGGTCAGCCTGGAGGACCATAGCAGCCAAGGTGAGCAGCAAGCAGGGCAGCCTTGCACCTGGGCAATTGCAGTTCTGGGCTGGAATGATCAAGGGGCTTCACAGGGACC--CTGCCTGCCTCCCAAACGCCCTATCAGATTGGATGGACAGTTGT---CTTGACCTGCATCTTCCCACTCAAGGTGTGCAGTGTCAGAAGCTCTCTGTGGGACTGGCCCCCAATGGTCGCTGCCTAGCTGGAAGCATCTAAACAGGGGCTGGGAGGTAGATGCAGGGCCTGCCATCATCAGGGAAGTATCATAGTGGGGATGATCTGGGGCC-TTGGGAGCCAAACTCAGA--TGACTCAGTTTCCAAATTTGTTGAGGCACCTTGTTTTTGTCTGAAGGCGGTTATATGTTGCATTATGTTTG-AATGATCAGGGCATAGGTCTTGCTCCTTGACTGGCAGGCATTTGTAGTCAACCTCAGAAGGCCTGGGCTTTGCTGCTgtcccttcacgtctctgggtctcgagttcctcataggtataatgtaaggcttTGTAAGGTCGGTTTCAGGAGTGTTGTGGAGATAGGTTAACTATGGGagccaacattcatttagtgcttactgtgg-gcaccaggtactgttctaagcgcatcgaatgtcggtgaacactaatacagtccccattttacagacaacaaacattaagcatagc a score=2132 s hg19.chr6_ssto_hap7 2463501 76 + 4928567 gggtcacataactggtaagtggtagagctaggatctgaac----------------------------------GAGCTGGAGCTGGGGGAGAGTGAGCATGTTTGAAAA s canFam2.chr12 3860572 105 + 75515492 aggtgacatagctggtaag--atagagccaagatctcaacccagacagtcCATGGTATGCCATTAACTGTTTTTGTGTTAGAGCTGGGTGAGA---AACATGTCTGAGGA a score=89978 s hg19.chr6_ssto_hap7 2463915 2123 + 4928567 TTGGACCTTAGGACAGTGAGGGCAGGGATCC---------------TTTGTAGGAAAGCACAAGAAACACAGACTTGTTCCTAGCTGACAAGGAGTGTACTGCCTGGTACCTGTCACCTGCTGAGGGGCTTAGGATGTGAGGGAGAATCTGACTACA-GTTTCATATTCT------------TCCCCAGAAATCATA-------CAGATTTCTCCACTCCTGACTCTGGTCATTTCTGTTTTTGTC---CTCCATATTTGCCTGGTGCCCCACCATCAACAGGTACTTTGGTCAATAATGTCCGACTCCCAAGAGGTCACAGGCTGGAATTGAGTGATGGAGACCTCCTGACCTTTGGCCCTGAAGGGCCCCCAGGAACCAGCCCCTCGGAGTTCTACTTCATGTTCCAACAAGTACGAGTCAAGCCTCAGGACTTTGCTGCCATTACCATCCCACGGTCTAGGGGAGAAGCCCGGGTTGGGGCTGGTTTCCGGCCTATGCTGCCCTCCCAGGGGGCTCCACAGCGGCCTCTCAGCACCTTCTCCCCTGCCCCCAAGGCCACACTGATCCTAAACTCCATAGGCAGCCTCAGCAAGCTCCGGCCCCAGCCCCTCACCTTCTCCCCTAGTTGGGGTGGACCAAAGAGCCTGCCTGTTCCCGCCCCACCTGGGGAAGTGGGGACCACGCCTTCTGCTCCACCCCAACGCAATCGGAGGAAATCTGTTCACCGAGTGTTGGCGGAACTGGATGATGAGAGTGAGCCTCCTGAGAACCCGCCACCGGTCCTTATGGAGCCCAGGAAGAAACTCCGTGTAGACAAAGCCCCACTGACTCCCACTGGGTAAGTGGAGTCCTCACTTGGCCCTCTCAGTGTTTTACTGCTTTTCGATTCCTTGT---ATCCCTAGGCTGTGAGGAGGTCCCCCTGCCTGG----------GGGGATGGGCACGGGAGGTGGA-ATAGATGGAA------------TGGCAAGACCTGGGTTAGCTCTGATAGGAAAAGAAAAATATGTGCAGGAGAACATGAGAGGTGGGGTGGGGCAGTGCTTATAAAACAACCGGAGTGAGCATGTCCTGCTTTTTACGTTCATATGGCTTTAACCCCATTCTTCTAGTGCCTAAGGATGGGGAACTTTCAGGCTCACACTAGAGGTTTTTAGGCCCACCCTATGTGTTTTTAAGGACAGAGTCCAGGCTCACCTTAGTTCTCAGACCACTGTGCCTCTGTGGCCTCACCCTATGACCAGCCATAGGGTGGCAAGGTCTAGGCCTTCTCCTACAGGTTTCCGGTGACCCTTG-TGTCTGTGTCACTTCCTTCAGAAATCGACGTGGCCGTCCTCGGAAGTACCCAGTGAGCGCTCCCATGGCTCCCCCTGCAGTTGGGGGCGGGGAGCCCTGTGCAGCTCCTTGTTGCTGCCTGCCCCAGGAAGAGACAGTGGCCTGGGTTCAGTGTGATGGCTGTGACGTCTGGTTCCATGTGGCCTGTGTTGGCTGCAGCATCCAGGCTGCCAGGGAGGCCGACTTCCGATGCCCAGGGTGCCGGGCTGGCATTCAGACCTAAGGTCCACCGCCAAGGCACCATCGGACA---------CACCT---GCCCATGAGTAGACACAGCAGCGAGCAAATAGGT-CTGATAAATACCCCC--CTTCCCTTCCCTCCCCAGGAGGGAATGACTACAGGGAAGAAGGATGG-----ATTGATGTGGACTC--ATTCAGGGCCTGGAGCAGACCCTGGTGGCCAA---GACAGAAGAGATGGTTTCCTGCCAAAGATATTGCCACCTCCAGGAAATTGCCAGTGAGCTGGAAGTTCCCACTATTACAAGCC----ATAAGGCCATGTTGCCATGGACACCAGAATATCTGTAGTCAGAGCACCTATCAGTTGCAAAAGCCATGCTTGCAACCGATGGAAAATGTAAGAGGGAGTTCTTAAGGTTCTTGG-TGGCATCACCCAAGGCATTCTGGGAAAACCTAGGGCCTGGCCCCAAAACTTCCCTACTCTGTGGCTAGTCCTGCTGCCA-ACAAAATCGTAGCGACCTGGCTTTTCACAGCTTTGCTTTTATTTCCAAGTCAAGGACAAGCCGCTTCATTCACTCCTGGGCATTTACTCTTCTTGTGGGTCTGTGATATTCCTTGCTTTCCA------GGGAGAATGTGCTTGGCAAGGTCTGGAGAACTAATT s canFam2.chr12 3860677 1958 + 75515492 TGGCACCTCAGCAGAGTGAGGGAAGGAGTCCATTCCTTCCATATGCCTTGTGGGACGGCATAAAAAATA--AACTTGTTCTCAACTCACTAGGAGCTTAATATCTGGT----GTCACCTGCCGAGGGACTTCAGGTGTT---GAGAAGTTGATGACAAGTGTCATGTTCTCCTCCCTCATGTTCCCCAGAAAAGCGAAGGAGGCCAGATTTCTCCTCTCCTGACTCTGGTCATTTCTGTTTTTGTCATTCTCTGTATCTGTCTGGTGCCCTGCCATCAACAGGGACTCTGGTCAATAATGTCCGACTCCCAAGGGGTCACAGGCTGGAGTTGAGTGATGGAGACCTTGTGACTTTTGGCCCTGAAGGGCCCCCAGGAACCAGCCCTTCAGAGTTCTACTTCATGTTTCAACAAGTCCGAGTCAAACCTCAAGATTTTGCGGCCATTACCATCCCGAGGTCTAGTGGTGAAGAGGGAACTGGGACTGGCTTCCAGCCTATGCTGCCCCCACAAGGGGCCCCAAAGCGCCCCCTCAGCACCCTTTCCCCTTCCCCGAAAGCCACGTTGATCCTCAATTCCATCGGTAGTCTCAGCAAGCTCAGACCCCTTCCCCTCACCTTTTCCCGGAGTGGGGGTGGGCCACAGAAACTGCCTGTTCCCACTCCTCCTAGGGAGGTGGGGAGTACCCCTTCTGACCCACCCCCAAGAAATCGGAGGAAATCAGCTCACCGAGTGTTGGCAGAGCTGGATGATGAGGGAGAGATTCCTGAGG---CTCCCCCAGTCTTTATGGAGCCCAGAAAGAAACTCCGTGTAGAGACAACCCCACAGACACCTGCTGGGTAAGTGGAG-------AGAACTTTCTCAAT-TTTAATTCCTTTTTTATTCTTTTTTAGTGCCCTGGGCTGGAAGGTGGCCCTCTGCTCTGGGGATAGGAATGGGGATGGGAATAGGAGGTGGACAGAGGTGGAACAGATGTTGAATTGGCAAGACCTGGGTTAGCT------------------------------------------------------------------------------------CTACTGTTGAGGTTCA-------------CCACTGGTCCAGTG----------------------------------------------------------------------------AGTCTATCTAAGTTCC--------------------------CTCTAGGATTACCCA----GGGGAAAGTTCTAGG----CTACTACAGGTTTCTAGTGACCCTGATTTTCTGTGTCACTTTCTTCAGCAATCGACGTGGATGCCCTTGGAAGCACCCAGTGAGCACTCCCAGGGCTCCCCCTGCAGCTGGGGGCGAGGAGCCCTGTGCAGCCACTTGTTGCTACCTACCCCAAGAAGAAACAGTTGCCTGGGTTCAGTGCGACGGTTGTGATGTCTGGTTCCATGTGGCCTGTGTTGGCTACAGCATCCAGGCTGCCAGGGAGGCTGACTTCCGGTGCCCAGGGTGTCATGTAGGCATCCAGACTTAAGGCCCACCACCGGGGTACCAGAGGACAGGGAGCCAGCACCTCCAGGCCAGGGGTAGACAGTGGAGC--ACCGATGGATCCTAAGAAATGCTCCCATCTTCCCTTGCCTCCCTGGGAGGGAATGACTACAGG------GGATCGTGCCCATTGCTATGGACACTGATTCAAGG-CTGGAAGAGGCCCTCATGGCCAAGGTGACAGAAGAGATGGTTTCCTGCCAAAGATATTGTTGCCTCC-GGAAGTTGC----AAGCTGGAAATTCC----ATTACAAGCTGTAGGTAGGTCCTTGTCGTCAGAGGCACTAGAGTGTCTG--GTCAGAGCACCCGTCAATTGCAGAGGCAATGCCTG-----GGCAGACTTGGAAACAAACAGCGCTTAATGTTCTTGGATGGCATCA-CTAAGGCATACTGGGAAAACCCAAGACATGACCTCAAAGCTT--TTACATTGTGGGTAAACC-ACTGACACAGACCATGATCTTGAACTGGCTTTTCAGAGCTTTGCTTCTATTTCCAAATAA---ATAAGCAGCTTCATTCAATCCTAGACATTTATTCTTTTTCTAGGTC--TGACACTCCTGGCTTTCCAGTTCTTGAAAGAA------TGATATGGTCTGGAAAACTAACT a score=4146 s hg19.chr6_ssto_hap7 2466038 118 + 4928567 CAGAATCTTAGGGGAAGGGGAGAG--------ATGGAAATACAAACCTGCTTACTGGAAAGGTGCAAATATATGGGTTGAGCTGGAGGTA-------GGAATACAGGTAATTAAGGTTTCTAGTTTAAGGGAA s canFam2.chr12 3862830 121 + 75515492 CTGACTCTTAGGGGAAGAGATGAGCAAAGCACAGAGAAATGTGAACCTGCTCACTTGAA------------ATAGAATGGGCTGGAGGTGGGAGAATGGAAAAGAGGTACCTAAGGTTCCTATTTTAAAGGAA a score=9905 s hg19.chr6_ssto_hap7 2466156 537 + 4928567 AACAGATCTATTGCCATTTAAATAAGGTAACTGGGATTTGGTTAAGTTCACAAAGATAGCAGAAGATTTATTTACAGGCTTCACCTGTACTGTCAGGGCA-AGAGAAAGCCTGGTAAACCAGCTACAGCAGTTTACCAGTGTGATGGCTGTGACACAGCTCCACTCCACGGGTGGACACAGCAGAGGGCAACTGGGCTGGCCTGGTTCAGTGTGAATCAAACCGCTTAACCCACACATGGTACATGTGATTTTCTTTTGTGAGCCTTACACCAAGCCAAACTATTGTCAAAGCATCATTTCTATAGAAATAAAGCCTTATCTTGACCTGTTCTATTAAAACCTG-CCACATCCGCCCTTTCCTACCTAGATTTAATGAGCCCAAG------------TTTTTTTACATGGA-AGAAATGACTCTGGGGCAAAGACCCCTAATGAACTAGTGGCAGAGCCAGGAATAAAACTTGAGTAACTAATGAGTCACTTATGGGCAGAGTATGCAAAAACCTTAAGTGGAAACCAAATAGACCCTGGTATCAAGAAAGC s canFam2.chr12 3863129 435 + 75515492 AATAGATCCACTGTC------TTAAAGTAGATGAAATTTGGTCAAGTTCTT---GATGGTGGAA----CCTTTACAAATTTCACCAGTACTATTATAGAAGAGAGAAAACCTGGT-ACCCAGGTAGAGCAGAT--------------------------------------------------------------ACTGACTTTATTCAGCATGAATGA----GCCTAACCCA-------------------TCTACAGTTAG-------CCAAGCCAACATATTGTCAATGGTGTAGCTCT-TACTAGGAAAGCTTTATGTTGACCTAT--TAGCAATCTTTGTCCATTTCCTTCTATCCCTACTTA-----AATCAGCCCAAGGTTTGGTTGGTTTTTTCCCACATCAAGAAAAACAGCTCCAGG--CAAGAGCCCCAATTAAGTAATGGCAGAGCCAGGACAAAAACATGGGGGTTTGGGGAGTTGCTCATGGAC-GACTAGGCCAAAACCTCAAGTGGAAACCAAATGGACTTTGGTATTAACAAAGC a score=4146 s hg19.chr6_ssto_hap7 2466707 122 + 4928567 GAAGTTTCTGGTTGGGGTGATCTAGGTTCAACAGAAA----------TAAGATGATTTCTAAGTATAAAGCCATTTAAGAA---TTCCAGAGTAGGGTG-GGAAAGCAAAAAGCCAGCTCTGAACAGGTAAC-AGCT s canFam2.chr12 3864028 128 + 75515492 GGAGTTTCTAGTTGGGGCAAT--------AGCAGAAAAAAGGTATCTAAAGATCATTCCTTAGTATAAAAACA-CTAAGAACACTTCTAGAGTAGAGAGAAGAAAGCAAAAAGCCAGGTCCTAATAGGCAATGAGCT a score=106977 s hg19.chr6_ssto_hap7 2466865 2228 + 4928567 TCACAGGCTTTTGGGAACTAGCCTA-TCACA-gggccctgtacaaataaacttggctgcaatcccagctctccctctgatgttgtgtgaccttaagGAGTGTAAATGGCACCTTAGTTTCAGG------------GTCACTTGGGTATGAGCATTGGATATTCCCATCCCCACCTCAGTAACT---GAAGGACAAACC-AAGATAAGTGTGTCTATCTACTGTGTCCCAGGCTTCTTTATTTAAGAAAAAAGTGATACATGATGT-GGGATTAAAATCAAGAGCATCATTGAACTTCACCTTCCCTCCAACCAGTTGCCCC--------AAACTCCCCTGCCCC--CACCCTTTGTGTTCCCAATTCCTTCCTTAGTGAATGAAGAACTTAATCCCAAAAACCCTGGCACAAACTCCAGGTTTTCTTTCCCTAGCTCCTCCCCTCCCCCTGTCCCCCATTCCT-AGAAGGGCAGGCACCTCAGTTTGAATGCATGGGAGAGCCCAGAGTGGTGACAGAGACAGGGGGAAAGGCTTCCCCCTCAGGGAAAGGGACCGAGGAGTACAGTGCAGTGAAGTGAGGGCTCCCATAGCCTGGGGTACCAAAATGGGGCCCTGGGGCCAGAGGAAAGGACACTGGTCCCCCTGAGAAAGGAGACCCAGCAGCCTCAAAATCCTCTCGTTGTGCATAGTCGCTGCTTGATCGCTTGCCCTTCTGGCGCCGGTTACAGAACCACACTCGGACCACCTGCCAGTGAACGACAGAAAGGAGAATGACATTAGACAATGAGCT--GAGAGACGGGCCTGACTCTGCTTGGACATTCTATCCAAAGCCAACAGCCCTAGAGCAGTTAGAGGAGGACATTAGAGAATGAGCTGAGACAGGCCTGACTGCTTGGACATTCTGTCCAAAGCCAACAGCCCTAGAGCAGTTGGAGGAGCCAGAGCTAGGGAAAGCGAGGTGGTGACAGGGGAAAGAGATGGAGCCTGCAGAGAGACATGGCACTCACATCCTTCTCGAGCCCAAGCTGCTGGGCGATGTGGCTGATCTGCTGCAGTGTGGGTTTCGGGCACTGCAGGAACAAATTCTCCAGGTTGCCTCTCACTCGGTTCTCGATACTGGTTCGCTTTCTCTTTCGGGCCTGCACGAGGGTTTCTGCTTTGCATATCTGTGCAGGTGGGAAGGGGGTGACAAG-----------------GGCAAGCTTTGGACTTGCTGAGTAACA-----------GCATCACAG-----------GGGTCT---GTGACTAGATGTGTCAGCAGAGCCAGGTGGTGGTGTGAAAAGGCAGGATCCTGGAAGGGTTG--------------GCTCTGGA-CCTTATCCCAGCAGAACTGAGGAATTTCACTCCATCCCACTGAGAACCACTGCACCAAAGACGGAGAGCTACGAGCCAGTGATGGAAGCAATGGAAATTAGGCCAAGAAA---GGGAAGGTCCCCGGGTATCCCCCTCCCACCCTTACCTCCTGAAGATTTTCATTGTTGTCAGCTTCCTCCACCCACTTCTGCAGCAAGGGCCGCAGCTTACACATGTTCTTGAAGCTAAGCTGCAGAGCCTCAAAGCGGCAGATGGTCGTTTGGCTGAATACCTTCCCTGGGGGAGGCCAGTCAAAAGAGAAGCAAAATGAGGGAGCAC--------GCAGGGCCCTTGTGACCCTGAGATCCA-------------------------------------AGCTTACCACCTCTTCCCAGAGGGAGCTCAAAGCCCAAGCATCTT-----CTCCCTCTCCCTACTCCTCTTCATGGGTGAGGGTAGAGTCTGCCCCTGCCCC---TCCCCA--------------------------------------CTAGGTTCAGGGATACTCCT-TAGAGGGGAGATGC------------GGTCAGAAT-CTGCAGAGGGGAACCCACCAAATAGAACCCCCAGGGTGAGCCCCACATCGGCCTGTGTATATCCCAGGGTGATCCTCTTCTGCTTCAGGAGCTTGGCAAATTGCTCGAGTTCTTTCTGCAGAGCTTTGATGTCCTGGGACTGGATTT-TAAAAGGCAGAAGACTTGTAAGAACATAAACACACCAGTTATCAATCTCCCCTTTCCATTCGGGATTCAAGAACCTACGTGTGGCCCCAAGGAATAGTCTGTAGAAGTGCATCTGCCTTCCAAGCTGCCCACCTAACTTCTAGAAATAACCTACCCACAAATGTCATTCACCCATTCCCTGTTCACTGACTCATGCATGTAACAAAGGACTACTCTTCCCCCAGAAACTGGCACATCCAAGGGATGCAGAGCATCGTGAAAG----GACAGAAAGAGAGACCCTGGCCTCGAGGAG----AACACCTGTCAGGTTATGAAGG s canFam2.chr12 3864350 2284 + 75515492 CCCCAGGCTCTGAAGAACTAGTTCACTTATAGGGGCACTCTCCAAGTAAG-TGGGTTCCAATACCGGCTCTCCCTCGGACACCCTGTGGC--TAAGCAGTTTGAATGGCACCTTGGTTTCAGGTGGGATCTAAGAGCTATTTATATCTAACTATTGGGTATCCCCAACCCCTCTTCAGTAACCACAGGAGGACAAACCAAAGACAAAAGTATCTACTTACTGTGTCCCAGGCTTCTTTATTTAAG---AAAGTGATGAGTGATGTGGGGATTAAAAACAAGAGCATCCTTGAACTTCACCTTTCCTCCAACCAGCCACCCCCCTCCCCGAAACT-CCCTGCCTCTACACCCTTTGTGTTCCCAGATCCTTTCTTAGTGAATGAAGAACTTAATCCC-AAAGCCCTGCTACAAACCCCAGGTTCTCCTTCCCTAGCGCTCCTTCTTCCTCTGGCCCCCATTCCTGGGAAGGGCCAGCACCTCAATTTGAATGCATGGGAGAGCCCAGAGTGGTGACAGACACAGAGGGAAAGCCTTCACCCTCAGGGAGAGGGACTGAGGAGTAGAGCGTAGTGAAGTGAGGGCCCCCATAGCCTGGGGTACCAAAATGGGGCCCTGGCGCCAGAGGAAAGGATACTGGTGCCCCTGAGAAAGGGGACCCAGCAGCCTCAAAATCCTCTCGTTGCGAATAGTCACTGCTTGATCGTTTGCCCTTCTGCCGACGATTGCAGAACCACACTCGGACCACCTGGGA-TGGAAGACACGAGGTACAGTGACACTTGATCTGAAGCTCAGGGAAATGGGGCTGGCTTTGCTTAGTCATTTGACCCAAAGCCAACAGGTCTAGAGCGGTTGGAGGA----------------------------------------------------------------------------CAAGAGGCAGAGCTAGGGACAGGGAGGTGGTGACGGGGGAGGAGACTGGA----GGACACGGACAAGGCACTCACATCCTTCTCAAGGCCGAGCTGCTGGGCAATGTGGCTGATCTGCTGCAGGGTGGGCTTCGGGCACTGCAGGAACATGTTCTCCAGGTTGCCTCTCACTCGGTTCTCAATACTTGTTCGCTTTCTCTTTCGGGCCTGCACGAGGGTCTCTGCTTTGCATATCTGGGGAGATAGGGAGTGAGTGGCAAGGGAGGAGAAAATGGAATGGCAGGCTTTGGATCTCTTGAGCACCATGAGGGTAGTGACTCCAGAGCTCGTTGCTAAGGGTCCCCACTGACTAGATGGGTCACCAGCAACA---GATGGTATGAAA---TAGAATCCTGGAAATGTGGGTCTAGACAAGGCAGTTCTGGACCCCTTTCCCAACAGAACCAAGGAATTCTATTCCATCCCGCTGAGGATTACTGCCCCCAAGAAGGAAAGTGACAAACCAGGGACAGAAGCATTGAAAACTGGGCCAAGAGACTGGGGCAGTTCACTGAGCCTCCCTC-CCCACCCTCACCTCCTGTAGATTTTCATTGTTGTCAGCTTCCTCCACCCACTTCTGCAGCAGGGGCCGCAGCTTACACATATTCTTGAAACTGAGCTGCAGAGCCTCAAAACGGCAGATGGTTGTTTGGCTGAACACCTTCCCT-GGGGAGACCAGTTGAAAAAAATACAAGGTGAGGCAGGAAGGCAGGAGGCAGTAACTTCCGGACCCCAAGACCCAGGGCCTCCCCATCTTTTCCCTCCCAAGACCTCACACCAGGGTTCTACTTCTTCCCACAGGGAACTCAAGGTCCAGGTATTTTTTTTACCCTCCCTCTCTACCCTATTTCATGTGTGGAGGTAAAGCCTGCCCCTGCCCCCTGCCCCCAAAACACCCTTCCCTTGCTCCCCTGGTGGGAAGAAAAGCCCAAGCCCAGGCGTGTTCTTCCAGAGGTGTGTTCCCTGTGTACTGTGGGTCAGGACAATACTGAGGGAGACCCACCAAAGAGAACCCCCAGGGTGAGCCCCACATCCGCCTGAGTATATCCTAGGGTGATCCTCTTCTGCTTCAGGAGCTTGGCAAATTGCTCCAGGTCTTTCTGCAGGGCTTTGATGTCTTGGGACTGCATCCAAAAAAGGCAGAGGATACATAAGAACATAAGTGTGTAACTTGTCCGTC-CCCCTTCCCACCTGGACCCCAAGAACCTGACTGTGGCCTCAAGGAATGGTCCATGGA---GTATCTGCA-CCCAGATTATCCACCAAAAATCTAGTGATGACCTATCTACAAACGTCATTCA------------------------------------------------CCCCAGAAAACAATGCATCCAGTCCACACAGAGCTCCATGCATGCACAGACGGAAAGGCAGGCCCTGGCCTCCATGAGAGCAAACACCCATCCAGTTATTAAGG a score=9758 s hg19.chr6_ssto_hap7 2469439 382 + 4928567 AAGTATCACCCCCAGTTTAAGGATGTTTTGAGATTAGAGAAATAGATAAGCTGCTAAGTTCTGGGTTAATTAAAAAGGAAGAGCATCATGTCTCAGAAGCTAAATTCAATATATACTCTCCCCAGCTTGCTTTGAGGGTCCCACAAACTATAACATGGCATGCATACACACAAACACAGCAAAAAAGT---------AACAGGTGTCATAAGAATGGATAAAGTGCTTTGTGTGTACTTACTCCTCATTTTTTAAATT-GATTATCCCTCATCTTTACTGTATCTTTTT-CACTATAGAGGCATCCTAATTGATTTTTAAattcaagagatttatcgagcaccttctataagccagcggctatacaaagtggacaaAGAGCCCTGACATCCAG s canFam2.chr12 3866674 331 + 75515492 GAGTATGA-CCCCAACTTGAGGCGGTTTTGAGACTAGA---------------------------------CAAAGTAAAGGGCACCATGTCTCTAATTGTCATTTCAATATATTCTC-CCCCAGTGTGCTT--------CCACAG--TAGGACAGGGTATGCATAGACACAAACACA-CAACAAAATGTATTTCTGAAAAGGTG---------TGAATTAAATGATAGGTAGACAGCTGGTGCTCATTTTTAAAATCAAACTATTCCTTATTTTTACTCTATCTTTTTGCAACATACAGGCATTCTCCTTGA----TGAATTCAACAGATTTA--GTGCTCTTTCTGtaaaccagtggctacacaac-tggacagaaagccctggcctcaag a score=630 s hg19.chr6_ssto_hap7 2469922 40 + 4928567 aaacttccactcctgctctgaaaAATAAAAAAGTAAATAA s canFam2.chr12 3867005 32 + 75515492 gggcttccattct--------aatatggagagacaagtaa a score=687 s hg19.chr6_ssto_hap7 2470093 63 + 4928567 TTCTCCCACCCCTGCTGCCTCtatttaaaaaatatatatatattatGGAAAAAAGTAAAGCAG s canFam2.chr12 3867037 50 + 75515492 ttatccag-------------tatgttactaggttagaagcactatgggaaaaggtacagcag a score=1523 s hg19.chr6_ssto_hap7 2470488 181 + 4928567 AGGAGATTATGGAGGAGGGTGACACTTTTAAAGACAGAGAAGGTGATTGTTTGAGCAA--------------------AGGACAAGAGTCTAATG--TGGCAAGGCCCTGAAGTGGGCCTTCCAGAGCCCAAAGCTGGTCTGGTGGCTAGGTAGATCCTGTTGCAGACATAGTGACT-------------------TTGTTTTAGTCCAAGTGAAATGATCT s canFam2.chr12 3867087 206 + 75515492 ggtagattatgg-gcatggggacaattttaaata-AAAGAAAGTGA-TGCTCGAGCAACCCCATGCGgtgagtggtgcagggtgaaaggctgagggctgggaagggat--gagaggagctcacgaaatccaagg-------gggggtagggtagattctgtggatactgtggtgcgtgaaacggggagctgctgaatggatgtgg----agtaaaatgatct a score=31095 s hg19.chr6_ssto_hap7 2471240 911 + 4928567 CCttttaaaacactgactctagttgacgtgttggccacagacagtagggaggaagcagtataatttgagaagctactgcggta--------atccca--------------gcagagatgatggtggctgaggccagggttaggttgtgattgattcaggat-------------------------gtttcttaaggataggatgtaggacgtgaaagaaactgaggatgactgggtttggccttgagcaactgggtgat---cagggtggagCagttcagggagccatc---acaagagacagaaaacgcggtagtcatctggtgtctaaatggcatttaggccttgagggtgggtgagaggaaggaagggtagatagagcagaggttgaaggactgagccctggggcatgccatatgaggctgccggcggacagaggtgcacagctagtgagaaaaaaacaaggcctttttgtagtcctgaagcctcaaggaagtgtttcaaTGGTGCTTGATCATATCAATTTCAAATAGGCTGTTTTCATCCCCAACTTCTGCTCAGCCAATAACTCAAACTGATAAATGCCCTCTGCTATCC----------------------TGGATT--TTCCAAATTCTGTTTTGGGGTTTTGGAATA----AACACTGGTCCAAATCCTCGCTTCATCATTTAGCAGTTAAAacccgttaaataggataataatacctccccctaggagattttgtgctggttaatgagataatgatgtataaacggagcacacagccaggcacttaggaagtggaccacaattgccagccattatcattCAAGGCTCAGCAGTGACCTCCTGCGAAGAGGTTGGGGCTTCTCGGTCACTCCAG---AAACCAGTCACACCT--TTCTGTGAGGTCTCAAGGCTTAGTATTTAATCTCTAATTGCTTACACTTGTCGCCTTGGAGGACTGGAAGATACATCTTTAATAGTCCTCAG s canFam2.chr12 3867293 924 + 75515492 gattttgaaatgttcactccagttgacatgttgacatcagac--taaggagg--------caaCTTCAGTAAACACCCCCCTGCCTCCCGCATCCCACCCCATCTTACCCCCCATAGAC-AGGGGGGCTGGGACTAGGGC--GGTAGTGATTGCTTCAGGGTGTATTTCCAAGGCAAAGATAGCTTAGTTTCCAAAAGATGGGATGTAGAATGTGAAAGGAA-TGAGGACAACCGGTTGGGGCCTTGAGCCGCTGGGTGTTAGATAGGGTGGAGCAGTTCATGTCGCCATCCCAGCAGGAGACAGAAAATGTGGTTGTCC-----TGTCTACAAGGCATGTGAG-CTTGAAGGTAGATGAGAGGAAACTAAGGTAGACAGAGCAGG---TGATGGAC---------AGGCACTCCA-ATGAGG--GCAGGTGGCCAAAGG-----GACCAGT--AGAGCAGCTAAAACTTCTGTGACGTCCCGGAGGCTTTGAGAAGTATTCCGAGGGTGATCAATCCCATCAAGCTCAAAGAGG------------CCAACTTCGGCTCAGTTCATGCTTCAGACCTTTAAATGTCTTCCGCTCCCCATCATGGCTAGGTGATGGGGAGTGGAGTAGGTCCAAATCCTACTTTGGGGATTTGAAATACAGTAACCTCTGCTCAGATCCTAGCTTCATCATTTAGTAGTTAGGacccgtgaaacaggctaataatgcctcccc--gggagattttgtgccagttaatgaggtaatgatgtaggcactgagcacacagccaggcacttaggaaatgg---acaattggcatccattatCATTCAAGGCCCACTCG---CCTCCTACAAAG-----------TCTAGGACTCGGCTGGCTGAAGCGCTCGCACCTCCTTCTGGGAGGTCTAATGGCTTAGTACTTGATCTCTAATTGCTTACACTGGTCTCTTTGGAGGGCTGGAAGCTACATCCTTAAGAGTCCTTGG a score=66936 s hg19.chr6_ssto_hap7 2472151 1386 + 4928567 CAGGGCTGGATG-------CCTTCAATCCCGCAGCAG-CTCTATATTT-GCAAATGGCCTGGAGAAATCTCTCACCA--------TTTTTCTTGTTTACAACTT-TGGAACTGAGGCTGAAGTCAATCAAAATCCAGCTTTCTAC-AAGGGGTGCCAGGGTGTGCACCTTAACACAGTGGCCAGTCATTGG-CCTGAGGCAGAGATCCGGGGAAGACAAGCCCTATACTTGACTGGAGGTAAACCCAGCTCACAACGCGCACACACACAGCCCAAACAGGAGATCCTATCAGAAACGAGTCACACCCTAGACTTTCAGGAACAATAATCCTGGAATGAGCACTGTTTTTACCCTCAGGCTATGCTTAACCCTAAGGCCAAAATCTTGGGTCTGATAAGGGTCAAATTTTCAAGCAGGACTAAGGGTGGGAAAAGGGGCTCAAACCAACCCCAACCTGGGTCTGGTGCTGGGCCAGTAAT--GAGTGACCAGACCCTGGG-----CAGGCCTAGGAGATGTGAGAGAC--CCTGACAAGGGCTGGGCCAGAGCA--AAGGCCAGCCTGGGCCAGCTTCTGACTCTCCCAGGCCGCTCTGCCCTCACCGGCAGTTGTCTCTTCGAAATCCAGCTTCCAGTTCCCACCTGGCCCCTGCCTGCCAGGGCTGCCTGCAGTTGATACACACCCCTCCCTGGCCAGGGCAGCTGACCCTGCCTGCTCCTCTCCTGGGTGCCAGGTCTGGGCAGCTGCAGGTGACCACTTCCCCATCAGGCTGCCCTGTCATGACCACCTCCCCACACCCCAACCCCGTCGAAGCTCACTTGCCTCCTCCGGGTTTTGCTCCAGCTTCTCCTTCTCCAGCTTCACGGCACCAGGGGTGACGGTGCAGGGCTCCGGGGAGGCCCCATCGGAGTTGCTCTCCACCCCGACTCCTGCTTCGCCCTCAGGCTGAGAGGTCTCCAAGCCGCCTTGGGGCACTAGCCCCACTCCAACCTGGGGCCCACAGTACGCCATCCCCCCACAGAACTCATACGGCGGGGGGCATGGGGGAATCCCCCACACCTCAGAGCCTGGCCCAACCCCCGGCCCGATTCCTGGCCCTCCAGGAGGGCCTTGGAAGCTTAGCCAGGTCCGAGGATCAACCCAGCCCGGCTCCGGCCCCCCTGGCCCATCACCTCCACCACCTGGAGGGGGCGAGAAGGCGAAATCCGAAGCCAGGTGTCCCGCCATGGGGAAGGAAGGCGCCCCAAGCCGGGGGCCTGGTGAAATGAGGGCTTGCGAAGGGACTACTCAACCCCTCTCTCCCTCCCCAGTCCCACCCACTAGCCTTGACCTCTGGCCCCGCCCCCTGGATGGGTGGAGGA-GAGGGAGGTGGG---GGGAGAAACTGAGGCGAAGGATGTTTGCCTAATGGTGGTGG s canFam2.chr12 3868398 1339 + 75515492 CAGGGCTGGACACATAAGTCTTTCAGGCCCTCAGCAGACCCTACGTTTGGGGAATGGCCTGGCGGGGACATCCACCACTTCAGTTTTTGTCTCATTTACAACTTACGGAATTAAGGCCGATATCAGTTAA-----AGTTCTCTACGAGGGGGTGCCAGGGGGTGCACTT--GCGTAATGGTGACTCACTGGCCCCAAGGCAGAGGTCAAGGGAAGGCAAGCCCTAAACTTGACGGCAGGTAAACCCAGCC--CCACGCTTCCACACACAGCCCAAACAGGAGCTTCTGGCAGAAATCAGTCACACCCTACACTTGCAGGAACAATAACCCTAGGATAAGCACGGTTTTTACCCTCAGGCCGTACTTAACCCGAAGGCCAAGGTCCTGAGTCCCGTAGGGATCAAATTTTCAAGAAGGGTTAA-GGTGGGAAGAGGGTCTCA----AACCCCAAGCTGGGTCTGGTACTGGGCTGGTCATCAGAGTGATGCCACCCCAGTCAGCCCAGGCCTGGAAGTGGGAAGGGGCTACTAGACGCGCAGGGGGGTGGGGGAACAAGGCCAGCCTGGGGCAGCTTCCGAC---CCGGGGCTGCCCAGCGCTC-------------------------------------------TGCTTGTGGCTTCTCAGGCCG-------------CACACCCCTCTCT-GCCCGGGTGGCCGCCCCAGCCCGGTCCCCTGTCGCGCTCCGCGCCTAGGAGCCT--AGGCCACCGCCTCCGCCTCCCGCGGCC--GCC----CCCCAACCCGGCGCCCCAGCCCGGCTGCAGCTCACTCGCCTCCTCGGGGTTTTGCTCCAGCTTCTCCTTGTCCGGCTTCACGACCCCGGGCGGGGCGGCGCAGGGCTCGGGGGAGGCCCCCTCGGAGCTGCCCTCCAGGCCGGCTCCCCGCTCGCCCTCCGGCTGGGAGGTGTCCAGGCCGCCTTGGGGCAGCAGCCCCACTCCCACCTGAGGTCCACAGTACGCCATCCCCCCGCAGAACTCATAGGGCGGGGGGCACGGGGGGAGCCCCCACACCTCGGCGCCAGGTCCGAccccgggcccgagggccggcccgcccggaggccccgggAAGCTCAGCCAGGCCCGGGGGTCACCCCAGCCGGGATCCGGCCCTCCCGGCCCGTCGCCTCCACCGCCCGGCGAGGGCGAGAAGGCCAAGTCGGAAGCCAGGTGTCCCGCCATGGGGAACAGAGGCGCCCCAAGCCGGGGGCCTGGAAAAATGAGGGCTCTCCTAAGGGCTGCTCAACACCTCTCTCCCTCCCCAATCCCACCCACTGGCCTTGACCTCTGGCCCCGCCCCCTGGATGGGTGGAGGACCAGGGCGGTGGGGGTGGGAGAAACTGAGGCCAAGGGCGCTGGCCTGAAGGTGGCGG a score=70766 s hg19.chr6_ssto_hap7 2474845 1986 + 4928567 CCAGTCCCAATCCCCTCAC-ACAGAATCCCCTTCAGAGACGCTAAAAGGAGCTCCAGCAACCCCCCTCTGCAATCCCCTCAAAGACTGAGCCTCAGACGGGCACCAAGGGCCCCCCACAGGGA-CCTAGGTATCTAGTTCCTCCTTCCTCTGGGGGACTCAGGCGTCCAGCTTCATCGTGCGTCCCTCCCCGAGCCTGGCAGATTGAGGGATGTGCTTTGTTTAGTGGGGCTGGCTGGCAGAAAGACGCAGAGGAGGTGGAGAGTGATTTGTGGAGGCG-TGCAGGAAGGCTGCCCTAAGCTCCCCT--TCAGGGTCTGTTTTTCTGGGCCTGGCCTGAGTATCCTGAGG-CTCATGCTGCTGGTCTAGTGCTTGATTCTGTTTGCAAGAGAATAGCCAACGGAATGCCTGTCTGTGAGGGATGATGTTTGTCTGTCTGCTCCCAAAACTTGATCTCAGTGGAGGGCCTGGGGTAAGTCTGGGGGCTCCAGAGGGGGCTCTGGGCCAGGGCTCCCCACAGCTTCGAAGGCCAGAAGGCCAGGTCTGGACTGGGCACGCTGACCTCTGTCGACTTAAGTAAGGCTTCTCATTGCAGGCTCCAGGCTCAGCCCTGCCTGGGCTTGTCTGCTGAGGTCAGTGGCTC--TATCTGCCTTCTAAGGGGATGGGTGTCCCG------------------TGGCCAGCTGTCTTCATCTTGGTGGCATCCGTGAGTCTTTTGAGACTTTTCCCCCACTCTTATGTTGCCT-------------CTGTTCGTGTGCCCATCTCCTGTCTGTGTAGACTTTTTGAGC--CTAATTGTATGCGTGCATTTCAATACCTG-CCACAGGTCTGCCGGAAGGTCTACAAGGCAGTGGGGTTGCAGCTGTGTTCACTTCTCGGCCTTTAACTGCCCAAAAGGCAGGTAGATTATGGGGCCTGGTGGGGGTAGGAGGAACATGCTTCGGAACAGGAGGAGGCCCCTCCCCAGCCATCTCAATCCCC-----------------AGGACAGAACCATCACGGCACCTTTGTCATGCATCTCTCTGCTGTCTGCCAAGAAGACGGCCTCTCAGAGGAGGGGGAGGGGCAGGCCTGGGATTTGGCTGGAATCTCC-ACACCAGTGTTTCTCAGCTTGCCATCCTCCAGGTTCCCCAAAAGCGCTCTTCCCAAGCCAGTCCAGAGAGTCCCTGCTGCCCATTTTCCTAGTGGCTCCTAAAACACCTTCCCCAATTTCCCCACTCAACACCACCCTCTTG-TTTTTAGATTATAATTTG----TACTGTAGGTGGTGTATTTCTGGCCTGGGCAAGAGGCCCATTCCCGAGAGGGACGCAGACAAGGGGTGGGTGCCTGGGTCCCTGGCTGCCTTGTGGCTGGATA--TGAGCCCAGTCAGGGGTCAGCCTCCTGCATGCCTAGACTCCTAGCCGGCCCCCT-------------------------------TCTGGGGTGCTC-AGGGCTGATGGGAGGTTGAGGCAGGCTTTCCTTCC--TTCTCACTGTCCTGTTATGCCTGAAGGGTAGGTGGCTTCACTTCAGCCAAGGCCAGCTCTCCCAGGCCCCAACCAGTGCTGGGGGCCACCGTTGGGCCTGGAGGAGAC-TGGAAGCCAGGCTGAGTCATCAGAACTGGTCCCATGATTCCCTGGGTT----TTAGAAAGTCACCATAAAA-------------------------------------AGATACTTCACACACACCTTTAT--TATTACAGTGCAATGTCAAGACCCTTCACAGA--------------------------GCACTGCCAGGGGACC---------CAGGTGAGGCCCACCTCTCCCCACCAGGTGTGGCGGCTGGCATGGCTGGGTGG-GGAGAGGTGAGATGAGCAGCCTTGCTGCTCTCAGCCCAGCCTTCCCTTCCCCTCACTGGGAGAT-GAGGTGCTGTTTGGTTGAAAAACCAGCTGAAAAAACTCAGTTGG-GACCAATAGAGACTTGCTCTCGACCCGGTCTAGGAAACCACTTATTTTGACTTCCGAGGCCTGTCAATCTGAAGGCAAAAGAAAGGGAAGAAATGGAGGGCTGAG-------GGTTCAGGCTTGGCCCACCTTGGGAGATGATC s canFam2.chr12 3870604 2007 + 75515492 CCAGCCCCAATCCCCCCCCCACAGAATCCCCCTCAAAGCAGCTAAAAGAA-CTCCAGCAACACCACCCCCCTTTCCCCTCAAAGCCTGAGCCTCAGACGGG--------GCCCCCCATTGAGAACCTAGGTATCCTGCTCC-CCTTCCTCTGGAGGACTGGGGCGTCCAGCCTCCTCATCCACCCCTCCCCCAGAGCCCCAGGCCAAGGGATGCACTTTGTTTAGTGGGGCTGGTTG----AAAGAAGCTGAAGAGGTGGAGAGCGATTTGGGGAGGGGGTGCAGGAAGCCTGCCCTAAACTCTCCCGCCCAGGGTCTATTTTCCTGGGCCTT-CCTGACAGTCCTGGGGGCCCATACTGTTGGCTTAGTACTTGATTCTGTTTGCAAGAGAATAGCTCTCAGGCATCCTGTCTATGAAGGAGGATGT--------CTGCTCCCCAAACCTGCCTTAAATGGAGGCTCTAGAGTAAATTGGGAGATG--------------GGATCAAAGTTCCCCACAGCTTGAGAGGTGAGAATCCTGAGCTTAG-----GGACACTGACCTCTGCCAACTT---TGAGGCCTGTCTTCA----------GCTGGGCCC-ATCTGTGGTTGTTTGCTGGGGCGAGTGGCTCAGTGTCTGCATTCTGAGGGGCTAGGCATCCTGGTGGGGCCCTCCTGAAAGTGCCCTGCTGTCTGTACCTCAGT---ATCTAGAAGGCTTTTGAGCCTGTTTTTCTTTTTTCTTCTGACCTGTATAACACAGCCCTGTTCATGTGCCCATCTC---------TGAATTTTTTGGACAACTAACTATATGCGTG-ATTTCAATACCTTTCCATAGGTCTGTTGAAAGATCTA------------------ACTGCATTCACCTCTAAGCCACTAACTGCCCAAAAGGCAGATAGATTAAGAGGCCAGGTGGGGGT-GGAGAGACGAGCATTAGAACAGGAGGGGGCCCCTCCCAAGCAATTTTggcccccccccccccccccgccccgggACAGGGCCATCACGGCACCTTTGTCATGCATCTATCTGCTGTCTGCCATGAAGGCAGCCTCCTGGAGGAGGGGGAAGGGCAGCCCTAGGTCTTGGCTGAAATCCCCTACACCATTGCTTCCCAGAAAG-CGTATTCTACGCTCCCAGAACCCTCTCTCCCCATGCCAGTCCAGGGTGCCCCTGCTGCCTAACTTCCCAGCGACTCCTCAAACATCTT-CCCAGCTTCCCTACTCAACACCACCCTCTTATTTTTTAGATTACAGTTTGCAATTGCTCTAGGTGATG--TTTCTGGCCTGGGCAAGAGGCCCATTCCAGAGAGACAACCGGAAGAGAGGTGGGTGCTAGGATCCCTGGTCAGCTTGTAGTGGGACACCTGAGCC-------AGGTCAGCCCCATGCTCCCCTGGAGACCTACTCAGAACCTTAATGACAAGTTAAATTTGTCTAGACCCCAAGCCTGGCGTTCTTGGGGGCTGAC-CCAGGCTGAGACATGCTCCCCTCCCCATCTCCATCCTCCCATTGAGCCTGGGGGAGGGGGGGCTATCCTTGTGCCA--GCCAGCTGTCTGCAGGACAGCCCAAGGTTG-----------TCGGCCTAGAGGAGACTTGGAAATGAGATTGAGTCACCAGACCTGACTCAAC--TTTCCTGGGTCATAATTACAGAATCACTAAAAAACTTCAAGTCCCCCAAACCAATTTAGGGCTGGGCTCACAAACTCTCCACATATACCTTTATTATATGACCTTGCAATGTCAAGGCCCTTCACAGAGACAAATGGGAGTATCTGATTGCAAGGCACTCACAGGAGACTCAGGGAGGGCAGGCAAGGTCCACA-CTCCCCAT---GTGTGGC--------TGGCTGGGTGGCTGCAAAGCGAGGT---CAGCCAAACTG--------------------TCCCCTTGCTGGGGCATCGGGGTG------------AAAACCAGCTGAAAGGGCTCAGATGGAGACCAGTGGAGACCTGCCCTACA-CCAGTGTAGCAGACCACTTATCTTGATTTCTGGGTTCTATCAACCTGTAGGCAAAAGAAAGCAA------GGAGGGCTGAGGTGAGAAGGTTCAGGCTTTGCCTTCTCTGGGAGATTATC a score=16871 s hg19.chr6_ssto_hap7 2476975 462 + 4928567 AGGAGTCAACTCTCTAGCTGTAGCCTGTAGGGAGTCAGAGGTGAGAGCAAAAGgagtgggtgagctgggaggattggtcaggaacaaactaggaggcatggacca-ggttctaagtcctggctctgactccctggctaatggcacctccccctcctgtgcctcagtttcctcacctagtaaagaggatttggactcaatgaactctaaacttccttccaactaagacatAAAATTGCTGCCCCGCTCTCATATGCCCTCCCATCTACCCACCCCCCTTACTTGACATGGGAATGTAGACT--TCTCTGCACACCTGTGAAGAGAAATGGGGGTAGGAAAGCTGGGAGTGGTGTTCAATGAGAAGTTGGCA-TAGGCCTCCCTGTACCCTGCC-ACCTACCTCCAAGCATCCTTCCTGGGGAATCTGGCAGGTTTTCCCCTGAAGTTTGATCAAGAGATATAGGAGGA s canFam2.chr12 3872611 391 + 75515492 AGAAGTCA----------------------GAAGTCAGGAGTAAAA-----------------------------TGTC-----------------CATAGAACAGGGTTCTTGGTCCTGGCTCTGGCTCCC-------TAGcacctcccctatcagtgcctcagtttcctcacttaataaggaggaattggattaaatgaactctacatttccttccagcctcaacatAAAATTGCTGCCCCGTTCCTATATTCCCCTCTATCTACCTTTGTCATGCGTTTGCCATGGGAATATAGATTTCTCTCTGCACACTGGTGAAGAGAAATTGGGGTTGGAGGAGTGGGGG-GGGGCACAGTGAGAGGCTGGCACTGGGCTTTTCTGCACCCCACCTCCCCACCCCCAAGCAACCTTCCTGGGAGATCTGGCAGATATTCCCACCAAGTCTGATCAAATTACATATGAGGA a score=47278 s hg19.chr6_ssto_hap7 2477744 1342 + 4928567 ACCCCAGCTGCTCATCTGAGGTTGCACAGAGACTCAGCATCAGCCTGGTGCATCACCA-GACAGGAGAGCCTATGCTCACGTCAAAGGGATCACAGCAGACTGCTGGCTCTGGGCATCTGAGCAGCGCCAT---GCAAGGGGGCAAGTGGCTTAGGGTTCCAGGGACTCAGGGG-CTGGGGCAGCCCATCCCTCAGCTAAGTTAGCTGGA----CACTGGAGGATAGAAGTCAAGGGCCTAGCATGTTGGGATGG-CTCCTCTCCAGGGGCTTTGCAGAGAGTCCCATGCACCAAGGGGGCTAGCGGGACAGGGAAAAGTGGTGGCAA--AGACC-----TCCCAGAC----AAACTGGCTGCCTCTGGTCCTATCAAGCTGCCGTACAT-CCTCCACACCAGGGCTTTAGGCACCATTCCACTGTGTTCCATGGTGACTGTAGGTGATGCCCCACCTTGAGAGCCCTTGGGTGCTCAGCCCTGGGTCAGAAC--TTGAACACCAAGTGGGAAAAGGGCTGACCAAGCACGGGAGAGGGAAGGAAAGCAGAGTGGCTAGGACGGTCAGCAACAGAGCTGTGTTCATTTAGGACATGGGTATT------GAAATGGAGTTTTGAAGGCTGGCTGAGGGGCCTGCACTCCATCCCTCCCACAGTGCCCTCAGCTCCTCCACCTTCCCC---ACATGAACCAGTCCGCACCTATCACACCTACGGTGGGCCGTGGTCCCACCCCAGCTTTCAGGTGTTTCCGGAGAGGGTAGACGCAGCTCTAGGTCAGGAAGGATTGTTTCCTTCCCTTCTCTCCTTCTGCAGCTATGCTTGGTTCT-GGCTGGCTTTTGCTGGAGTTGAAAGACTCAAGTGTGCTAAGAAGGGAGTCCTGGCCATCACAGTTGTAGTGCCAGTGTCCCCAGCTGCTCCGGTTCCCCAGCAACTCACAGACAACCGTGGTCTGGAGGGTGTGTGACTCTGAAAAGCCAAAACCCCAGAACTCCAAAGTTACAAGAGGTCAAAACAGTGGCTCTCTCCACCTCCACTCCTACCTCCTCCCAAAATGCATGAAATTCCCTTCCTCTGACTGATAAACCCTCACTCATTCTCCAAGACATATCTTCTCTGTCAACCACATCCCCACCAAAGTCACACTGCA-CCCGCTCTCCCTCCCCTGCAGCATGTGGCTCCCTC---CCATGTACCCAGCAT-----GCACT--GTTCAGCCACATATACTCACC-CAC-----CCTCCTGAAGG-----------------CCCAGCAcagacagcattgtgtttaaatccctgatctacacatcagctactggctatat-gcccacggcaaatgtaatggaacctctccaagcct----------tgctttcctcatttggcaactggacacaattatagt s canFam2.chr12 3873549 1303 + 75515492 ACCCTGACTGCTCATCTGAGCTCCTGCAGAGACCCAGCATTGGCCGGGTGCTCCCCCAAGACAGGAGGGCCTCTGCTCACTTCAAAGGG--CATCTCAGGCTG---------------TAAGCAGTCCCATCCCTCAGGGGATCAGGTGGCTTGAGGTCCTGGGGATTCAGGGTTCAGAGGCAGCCTGTCTGTCAGCTAGATTAGTTGCAGTACTGCTGGAGGACAGAGG-CAAGGGCCCCACGTGTTGGGATGGGCTCCTTTCCAGGGGCTTTACAGAGAGTCACACACAC---------TAGTGGGACAGGGAGGAGCAGTGGAAAGGAGACCAAAAGGCCTGGACCAGGGAACTTGCTGCCTCTAGTCTGGCCAAAATGTCATGCATGCATCCATAC------------------------------------------AGGCCATGCCCTACCCTGAGTGCTCTTGAGTGCTAAGCCCTGGTGGAGAGCCCTTGAAGACCAGGTGGAGAAAGGGTTCACCAAATACATGGGAGAGAAGGCAAGCAGAATGGCTAGGCTGGTCAGCCAGGGAAGTATGCTCAGAAAGGGCGCAGGTAATATGGAAGTAATGAAG----GAGTGTTGGCTGAGAGGCCTGC---------TTAGCCGGGTCTCCCCATCCCCCCTCCCCTCCCTCTGACACTGATCAGTCCACACTTGTCACTCCAAC--CGAGTCCGGGCCCCACCCCAGCTCCCAGGTATTTCTGAAGAGAGTAGATGCAGCTCTGGGTCAGGAAGCCTTGCTCTTTCCTCTTCTCCCCACATGCAGTTCTGCTTTTTTCTCGGCTTGCTCTTGCTGGAGTGGAAAAATTCCCACATGCTGAGACGA-AGTCCTGGCCT-----------------GTGTTCTCCGATGCTCTGGTTCCTTAGCGACTCACAAACTACCAGTGTCTGGAGGCCATGTGACTCTGAAATGCCAAAACTCCTGAACACCAAAGTTACAGGAGAGC-AAACAGTGGCTTTCTCCACCTCCACTCCCACCACTTCCCAAAATGCCTGGAATTCCCTT-CTCCAACTGATTAACCTTCGCTCATTCTCCTAGACCTGTCTCCACTCTC--CTGCAT-CCCAGCAAAGTCACGCTGCATCCCATCCTCCATCTCTTGCAGCAAGTGGCTTGCTCATGCCACACTTATGGCACTGATGACACTGGGTCTTGTCAC-----CTCACCACGCTGAGACCTGTTGAGGGTGGAAAGCCATTGTGGTCCCTGC----ACAGCATCCTGCTGACATCCA-GATCTAAACGCTA-TTGCAGACTGTATGGCCCAAGGCTAATGTAAAtgagcctctctgagcctctctgagccctactttcctcatctgggaatccgagataaaaatagt a score=2543 s hg19.chr6_ssto_hap7 2479090 58 + 4928567 accacacaagtaaagataacatgagataatccttgccagtgttaatgtaggacctacc s canFam2.chr12 3875047 58 + 75515492 ACCTTGGAAGTAAAAATCCAATGAAAGAATGTATGCCAGTGTTCATGTAAAACCCACC a score=10912 s hg19.chr6_ssto_hap7 2479148 237 + 4928567 aagaagaattcaagaactagtagctgctattgtAAGGTGTATTATTGGTAACAGCAAAATGAACAGCACTTACTAGG--CTTAAATGTTTGCTAGATGAAAAAAAATGATATTGGTTAGAAATATATTTTGCT-----------CAGGTCACCAGGTTTCTTATTAACTACTGGTGGTGGCGAGAGAGGTGAATGTCAGAAAAAGGCCAGTT-TTTCCCATTTCCTGGATTTGAGAAAGTTGGATAAATTT s canFam2.chr12 3875357 245 + 75515492 aaaaaGAATTCAAGGACTGGTAGCTGCTACTGTCATGTGTATTATTGGTGAT-GCACAATGAACAGCATTTTCATGACCCTCAGATGTTCGCTAGATAAAAAAAGAAGATGTAAGTTAGAAG-GTGCTTCACTTCAGACCCCGACCAGTCTCCAGGGTTCCTGTGAACTACTGGTGGGGGT-AGGGAAGTGACTGTCAGAAAAAGGCCAGTTATTTCCCAGACTCTGGATTTGAAAAAGCTGG---AATTG a score=3375 s hg19.chr6_ssto_hap7 2479677 89 + 4928567 TTTTTTCACCTGAAGGGAAGGCTTGGGAGCTTAAGGACAATGG---CTTCTTTCTTAGAGACCTAGTCCTTGACTGAGGGAAAGGGTGAGGG s canFam2.chr12 3875602 85 + 75515492 TTTTTTCACCTGAAGAGAAGGCTTGGGAGCCCAGAGGCAATGGGGAGTTCTATT-------CCTATTCCTCTGCTGGGCTAAAAGTGGGGAG a score=1959 s hg19.chr6_ssto_hap7 2480088 37 + 4928567 TTATACTTCTGTCCTACTCTTGCTAATACCTAAGACC s canFam2.chr12 3875687 37 + 75515492 TTACACTTACATCCTACATTTGCCAATACTCAACACC a score=40189 s hg19.chr6_ssto_hap7 2480125 1029 + 4928567 CAGTCCTTTTGGCACCACTGGGTACATAAAACAAGGTTTGAG-TCAGGGATGAACTCCCCCAGGC---AGGAGGAGATAGCATCAGGATCTCAGTGAAGTGGGATGGTATCT---GAGTGCCTAGCACA--------GTGCCCCACGCAGAGCTCAATGCATCTTAGCTGAACAATAACGAATGC--AGCTGCACATCTTCAGGCCCATATTGAGCTCTTCTCTCTTTTCTGCCTCCTCCTGAGC------CCCCAAGCCCAATCACCTTGGCTCTGGTTGTTGTGTGCCATGATGCTCCCCGGGATGGTGACAAGGTGCTGGGCTCTGGCCTTCAGTCTGAGAACCAGCTTCTCCCAAGCTCTTGGGTCCCTGGCCTGAGCCCAGGATGCACGGGGCTCTGCCCACCTGCCCTCCTTGCAGCATCATAAGAAAGGGTGGTCATCCAGGTAGCCTGAGACTTCGTAAGGGGCTTGCCCAGGGCTGGGCTGGGAAAGAGTAATGAAGTCATAGCACAGAGAGTGGGTTGCTGAGGAAAAGAGAATGATGGGAAAGGGTTATTTTCCAACAGGAGTCTTACCTGGGAGACACTGC---ACAAGGTGCCTGTGTGGTGAGGCTGTGTGACTATTTTTGAGGGCACCAAAGGAGTGGGTAAGGGGAATGCAGACTGAACAATGGGAAGGGAATCTCTTGTTtccctgcagggcctcatctaggctcattgttttaaatagtaatgactcccaaatctcttcatccctgttcttcacatcggtatatccaactacctacctgttggtcatctggacctaaggttccatatggccttaaatctgacacatccaaaactgagtatttcctc--ttggccctggccatggaacaacctgcctctcatcctatattcctggtgagtggcatcatcctctcacctgcctgcttactcaagccagaaCTGGGTTGAGGTGTGGGCAACTACC-GGATGTCAT-GTAGCCTCCTGGCACAATAGCATGAAGTGAGCTGAGAGGTCATGGAACAAAAAGGCTCACAGACCAA s canFam2.chr12 3875933 995 + 75515492 CAGTCTTTTTGGCATCACTGGGTACAT--AATAGGGTTTGGGTTCAGAGATATAATCCCTTAGGTGGAAGGAAGAGATACTATCC-AATCTCAGTGGA---GGATGCTATGTCTAGAGCACCCGGCATATTTATTTGGTGCCC------AAACTGAATAAA---TAGTTGAATGATAACGAATGCCTGGTTCCGTATCTTTAGGCCTGTAGTGAG-TCTTCCACCAAGACTGCCCCCTCCCCACCCTTCCACCCCACCCCCAGTCACCTTTGTTGTAATTGTTCTGCTTCATCAGG-TCCTTGGCATGATGATAAGGTGCTGAGCTCTGACATTCAGTCTGAGAGTCAGCTTCTCCCAAGCTC-TGGGACCATGGCCTG----------GCATGAGA----AGCCCCATGCTCTCCTTGCAGCACCATAAGAAAGGCTAGTCCTCCAAGTAGTTTGAGA-TTCCTAAGGAGCTTGCCCAGCACTGAGCTGGGAAAGAGCAATGAAGTTCTATCGCAGAGTATACCTGGCTGAGGGAAAATAAATGGTGGTCAGGGTTTATCCCTC-ACAGG---CTTCAACATACGACATGGCCCTACAAGGTTCCTGTA--------------------CTTTTAGGGCACCAAAGGGAT-AGTAAAGGAAATGGAGAGTGAATAGTGGGAAGGAAAACTTTTGTTTCTCAACAGGCtctcacccaagctcattgctttaaatagtaatgaccacc-agtatctaaatccctgtacttcacatcagtatgaacaa----ccacctgttggccctcttgacctagagtcctacactgcctcaaactcaacacatcc-aaactgagtatatccttagcctccccccaccatagaacaaccggaccttcttcctatattcctgataggtgacatcaccatccagtctacccacttactcaagtcagaGCTGGGTTGTGGTGTGGGGAATGACCTTGATGCTATAGTAGCCTGCTGGTGCAGTACCAGGAAGTCATCCCAGAAGTCACAGAATAAAAAGGCTCACAGACTAg a score=8648 s hg19.chr6_ssto_hap7 2481160 312 + 4928567 ATGCTCAAATAACATCGTTTATTAAATAAATGTAAAACACATTCTGAGAAGCAGGAGGCAGGTGCTGGGGTGGGTCAACACACGGGAGAGGGGGCAAGTTGGGTGGAATGATCACACCAGCTGAACTGTGGGTCATGCAGTGTGCATCCATCCTGTCAAATTGAAACCTCCTGCATCCTGAGTGCCTCATGTCTCACGTATTTAGGGTACCGTGAATAT--TTAGTGCCTCCTTGGTCTTTCTGTCCCTTTTGATCTCTGTACACACGAATATGTTGTACTATCTACAGATGACTAATTTAGTTATCTATGTGT s canFam2.chr12 3877497 264 + 75515492 ATGCTTGA--CACATGGTTTATTGGATAAGGGTAAAGCACACAGTGAGGAGCAAGAGGAAAGCAGTGGGGT----------------------ACAAGTTGGATGGAAGGATCATACAGCCTATATTCTAGGTTATTCAATGTGCATCTGTCCTGTCAGACAGACGCCTCCTGAATTTCAAGTGCCTCAGA--TCATATATTTAGGGTATCATGAATATCATGAGCACCTGGTTGG-CCTCCTCTCCCTTT---------------------CTTTTTTCTTTTTAAAGAT--tttatttatttatttatttat a score=2170 s hg19.chr6_ssto_hap7 2481593 140 + 4928567 acagtcagcaagccctgcccatttttaacttcc--tgtttctccaatctggacattcctctacctccaccaaaccagcccatagtatggcttgcttggattatagccagagtctttctaactggtctctctccctccagtct s canFam2.chr24 31950306 126 + 50763139 ACAGTAAACACACGTTACACTTtccaaaccacccacgttcctgcaa-----------ctccaccacctccatcccagtccaagctaccactatctttcacc-cagtcag----cttctaactggtctccctgctgccaccct a score=18111 s hg19.chr6_ssto_hap7 2481742 473 + 4928567 aaaatctgtcctccttgatataatcagagtgatctatccagaaatacatatcagaccgcatacctctctgctcttcctctaaggattccccttttgtcctcgggatggtttccaagctccttagcaagctaaacaaggccccttgaaggctgccgtctccaccctcatctcccaccacaccctgcctTCACCTGACCCACTTGGAACAGGAAGGTTGGAGCACCTCCATACTCCTGCAGTTCCACCTCCCAGTGCCTTCCTGAGATGGTCCCCTG--AAGGGAAGACCCATCCTTCCCTTCTCCAAATACCACTTAAACCACTTAAACCCTTTCATTAAACCCTTACCCTGGCCTCAAACCATCTACCACGCTGCTGTACCCCTTTATTTCAGAGACG-GCTCTGACTTTCACTCAGAGGT-----------------GACACTCACCCTAC-CACTTGTCTATGGCTGTGCATCCCTCTTGGGGCCATCTCTT s canFam2.chr12 3878266 461 + 75515492 GACCCCTGTCCTCC-TGATACAATC--AGTGATCTATCTGGAAACACATATCTTACTGCATACCACTCTGCTGCTCCTTCAAGAATTCCC--TTTGTTCTCGGGATGACTTCCAAGCTCCTTAGCAGGCTAAACAAGGCCTCTCAAAGGCTGACTTCTCTACCCTCATCACCAATTACTCCTTGCCTTCACTGGACCATCTTGGAACAGGAATGTTTGAGAATCTCTATAGTCCTGCTGCTGTTC-------TATGTTCCGGAAACCGTCCACTATCAAAGGGAGTTTCTTTCCTCTGTTCTGCTCCCCCCACC--AGCCA------------CATTAAACTCTGACCCTGGCCTCAAATCATCTACTACAGGGCAGCACCCCTTTATT--AGAGGTGAGCT----CTCCAACTTAGGGGTCAGTGGCTAATCCATAATACACACACCCTCCACACTCCTCTACAGCTGTACTTCCCTA-AGGGGCCATCCTTT a score=15795 s hg19.chr6_ssto_hap7 2482932 742 + 4928567 GGCCAAGTTTAAGCTTC--AAGTGGGAGACATG-----GGACAAT-TACTTACCAGATACAACCAGTTTCAGAGGAAGCCCTACCTACCCTCTAAGCCTGACCTTATCTTGCAACCTCCATCGCCCCAGACCTCCCC----CGGCTCCAAAAAGCACTCCCAAGAGGCCTCATAA---AGGCCACAGTTTGGGGAAGGTTATGGCTCAGGGGAAGGGGAGAGGTGCTAAATAATTAAGCCCCCCTACTACTCAGCACCCGCGTGAGGCATCGTCAGGCATCGTCAGGCCTCCAGTGGTGGTGGTG--GCACCGGGCCTCAACCTCCCCGGAGGGCTGGACTCTCGCTGCCAGGCTGTGGGGATCAGGCGTTGTGGGGGAGGGGGACACTTAACAGGTATGGAGGGCGGAGCAGAGCCCCGCAGTCACTGGCCTGACTTCCGGAACGAACCGTCGCCAGCAAGCACAGCAGTAGGACCAGGGGGATGCAAGAGCGGGGGCGGCCGGGGATCGTGCTTCTCGCTCAGGTCCAGATTCCCGGCAACCAGGCCGGCGGAATCACGTGCCATGCTCCAGGCCAGCGTAGTCCCGCCCATCTTCCAGCTGAGCGTACCGGGAGGCTCCCATTGGACTGGAGCTGCTACGGAGGCGGGACTTTCCCTTTTTCTTGAACCCCATTGGGTTAAGTCCAGTCCGAGACAAGCGTCTCTCCTCAGCAG--TGGGAGGGGTGATTTGGCTCATCCATACTTAGGAATTTGGGG s canFam2.chr12 3880322 645 + 75515492 GGTTAAGCTTAAGGTTCCTATGTGGGGGAGAGGATTCAGGGTAATCTATTAGTTCGAGGCAGCTAGTTTCAGAGGAAACGCTACCCCTATGCCAGGCGTTCCGTCTTCT--CAGACTCCAGCTCCCCAGGCCTCTCCAGCCCGGCTCCAGGAAGTGGTCACAAAGGGCCTCATAATAGAGGCCACAGTTTGGGGGCGGT--GGGTTGGGGTGAAGGGGAGGGGT-CTACACAATCCAGTCTCCTCACTACTCAGCGCCCAAGT------------------GTCAGGCCTCCAGCGGTGGAAGTGCAACACTCGGCCTCAGTCTCCCGGGAGGTCAAGCCGCCGGCTG---GTCTGCGGCGCT-GGGCGTTAGAGGCCGCGG------TCGGCTGGCTCGGAAGGCTCAACAGGGCCCC----CTACCG--CCGGCTCCCGCAGCGCGCCGCCCGCAGCAGGCACTGCAGCCG---CGAAGGGCT--------------------------------CCGTTCAGCCGCAGCTCCCAGGC---------------------CTccgcgccccgggcccccgcggccccACCCC--------------------GAAGGCTCCCATTGGGCGGTGTCTGCCTGGGAGGCGGGACTTGACC-TTTCCTTGTATCCCATTGGGCCAAATCCAATCGGAGGCGGGATTCTGCGCTCCGCAGGTGGGGAGAGGTGCTTAGGGCCACTTGAAATTCGGGATTTTGCG a score=1782 s hg19.chr6_ssto_hap7 2484286 44 + 4928567 TCCTTGGTCGCTGTG--CAGTCGAGTGTTTTTATGTTCAGACCTCT s canFam2.chr12 3880967 46 + 75515492 TCCTTGGTCACTGTGGCCCTATGAGTGTTTTAATTCTCGGATTCCT a score=8242 s hg19.chr6_ssto_hap7 2489944 193 + 4928567 AAAAGAAAATAGTGGAAAGACAGAGACCCTAGAAGAGGG-------AGAAGGCCTAAGGCAATTTCTTCTTCCTCTCTTCCCCATCATTCTTTCAGCCACTGTGGAGAGAGGGAGAGTACGGGGTGCAGGGTAGATGAGAGTAGACAATTCTGATTATTTGAGGAGGGTTT--GTGGTTTAGGAAGTGAGCTTCTCACCGAt s canFam2.chr12 3883524 199 + 75515492 AAAGGTAAATGGTTGAAAGGCTGAGATTCCAGAAGGGGAGGGCCCAAGAAGGACAAAAGCAATTTCTTCTTCCATCCTTCCCTAT---TCCTCCAGTCATTGTGGGGAGAGAGAGAAGAAAGAGTGCTGGGTGGATCAGAGAGGATGATTCCAGTCCTTTGAGGAGGGCTCCAGGGGTACGGAGAGAGAACTTCTCTACGGT a score=5258 s hg19.chr6_ssto_hap7 2490671 130 + 4928567 CTCATTCTGTTTCTCTTTCCTTTGGCCTAGTTTGAGTGCCCAGCAGGTGTTTCAAGTCACTGATTACGTATCTACTCTGCGAAAGTTGTTTGTGCAGCCTGTTTATCCTCTCCTTTGGAACTTCAGTACt s canFam2.chr12 3884407 122 + 75515492 CTCTTTCTGCTTCTCTTTTCTCTGAGCTAATTTGGGTGTCTGGCAGGTGTTTCAGGG---TAGTTATGAATCTACTCAGAAAAAGGTATTTGTGCAGCCTCCTCA-----CTCTGTGGGAttttattttt a score=1207 s hg19.chr6_ssto_hap7 2492405 23 + 4928567 tttaaaatttattaaatttatta s canFam2.chr12 3885134 23 + 75515492 tttatagtttattaatcttttta a score=1483 s hg19.chr6_ssto_hap7 2494387 35 + 4928567 CCTGATAGAATTCTCTTACCTTCATTAAGAGAAAA s canFam2.chr12 3888193 35 + 75515492 CTTGATATATTTGTTTTTCATTCATTAAGAGGTAG a score=4861 s hg19.chr6_ssto_hap7 2495387 139 + 4928567 GGATTCTAATGGTCTAATGCGACAGTTGTGGCTTCAGTGAGCTCAGGGTGCCCTCTGGTGTCCATGTGGGCCCAAGGAT--GTGATATTTAGAAAAAACACTTGTAATTCTGG---GGGACATGTAATTGAAGCCACTTGCCAA s canFam2.chr12 3888324 144 + 75515492 GGTTGTTGATGGTTAGACACAATCTTTGTAGCTTTAGAAGTCTCAGGACGCCCTCTAGTGTCCATATGGATTCAAAGTCCAATGATTCAAAAATAAATCACTGGTGCTTCTAGTCTAGGACATCTTATTGTAGCCATTTGCCAA a score=9503 s hg19.chr6_ssto_hap7 2496007 403 + 4928567 AAGATTCTCATTCTTAGCCCATTCTGTTATCCCTATGAGTCTGCTAATAGTTGTCATACTAGGTCACCCTGTATTTGGATCAGAAGGTACGGTAGGAGCGCCTAGGGTCATATACCAGGCCCAAACAGCTGAGGGCAGTAGAGTAAGGCCTGCAGGTCAATGCTTCGAG-----------------------------------------------------------------------------------GAGGGGTGGGAAGGATTGAGGGTGTGGGGGCCAGACTGTGTAGTGGCAGGAACCCCAGGTGCTGTGTG--AAGCAGAGAGCATGCATCACCCTCTGA----CCCACATTCAGTTTCTTCCTGGGTGTCTGCA-ATTCCCGGGACTCCCAAGGAATTCA----AATGCTGCAGCCTTGGGCTTGCG--AATTCTCCAGGATGGGCAGAGTATGGTCTTATTTATCCTACACTTCTGCCTCATAGTGCT s canFam2.chr12 3888474 487 + 75515492 AGAACCATCATTATTCGCCCATTGTGTTATCC-TGTTAGTTGGCTTGTCATTGTCAGGCTATGCTACCCTATCTTTGGATTAGAAAGTGTGCTCAGAGTTCCTCAGGTGGCATCATAGGTCCCAATGGCTGAGCA---------AGGGCCTGGAGGTCAATGCTGTGAGTTGACTTAAGTCAACTTATAAGTTCACTTGTCCTGGGTGTCCATTGGGTTTCTACTCATACCTCAAATGCAGTTAACATTTGTGAGGGGTGGAAGGGCCTGAGGGGACAGGAACGAATCTTTGGAGGCACAGTTGCCCCAGGTGCTGTGTGTAAAGTGCTGCTTCTGGATCACCCTCTCAGACCTCCATGTCTGGTGCCTGCCTGGATGTCTGCCCATTGCTGGAACTC--AAGGCAATCAGACAAACACGGGATCACTGGGGTTGGAGCAGGGTTCCAGGATAAGCCAGGTGTGGTTCAGTTTGTCCTATACTGCCGCCTTATAGTCCT a score=8223 s hg19.chr6_ssto_hap7 2496412 123 + 4928567 CCCAGTCCTCTTCTGTTATTAGAGATCAAACCAGGTTGCTTTAGGGcagtgattctcaaagtgtagtcctgggacaaacagcactggcatcacctggaaacttgttagaaatgcaattctcag s canFam2.chr12 3889172 123 + 75515492 TCCAGGCCTCTTCTGATATTAGAAACCAAACCAGACTGACTTGGGGCTAtggttctcaaagtgtggacctgagacaagctgcattggcaacacctgggaacttgttagaaatgcaaatctcag a score=832 s hg19.chr6_ssto_hap7 2496860 35 + 4928567 ggcctggcccacacatattatatcagaaactGCAG s canFam2.chr12 3889295 35 + 75515492 gctctacccagaacctactgaatgagaaattccag a score=13740 s hg19.chr6_ssto_hap7 2496917 361 + 4928567 AGAATTCTGCTTTTCGAATCAGGCCTTTCTCTTTTTCTGTCTGTCTTAAGTCTCAACATTGAGTAGCTGTGATTTTGGAATAGTCAGATGT-GGGACACCCTTTCTTGCCAGGAAGCATCTGGCTCCTCAGTCAGCTTAGTCTGATTCTTGGCCTGGCCCAGGGAAAGAAATTCATGTTCTGGATTCTGAGCAATGCTCTCTTGTCCCAGGTgcctgttgggctcctacttacacctcaaaacatagcttgaaca---ttgtctcttttgtgaactttctgtgactcctaggtcagagaagatggtctacttgtgagtttgcaaagcatgtgtacatgtcctgccaaccattagtgttacaattt s canFam2.chr12 3889810 331 + 75515492 AGGATTTTGCTTTTCAAATCAGGCTTTCCTCT------------CTCAAGTTTCAATATGCAGTAGCTGTGACTCCGGA-TAGTCAGAGGTCAGGACAC--TTTCTTACCAGGAAGCACCTGGCACCT---------------GAATTTAGGCCTGGCCTGGGCAAAGACACTCATGTCCTGGATTCTGAGCCATGTTCACTTGTCCTGGGTGTCCACTGGGTTTCTACTCATACCTC-AAATGCAGTT--AACATGTTTGTCTCTTTTATGAGGTTT-TGGGACTCCTTAGTCAGAGCTGATGGGCTACATATATATCCAAAAAGCCCATGTGCAGCTTGCACTTATCATTCCTGTTAATGTTt a score=19382 s hg19.chr6_ssto_hap7 2502197 546 + 4928567 GATATTTCCCACCTTGGATTGCTGGGTCGGGGGGTGGTGGGTATTTTCATTCATAATTGTCAGATTACTTTCATAAACAATGGAAACAGTTTC-AGGCTCCTCAGCTTCTCACCTCCAAAATGGGCCTTTTCCTGTATCATTAACAGTCCTCAATGTTCTGGCTAATCAACTGAGCGACTGTTTATAGATTTGCAGGCCATTTGGATTTACAATTAATCTTATTAATGAGGCTGAAA-TGTGAAGTTTATCTCAGCCTCAAAGAAGTAATTCAGCAAGGATCAGTGGT--TTCA---CTTAACAGTCTGGCTCTGAGGCTGGCTGTGGCCCTGTTATCCATGGTGAGCACCATGGGAATGCAGGCAAGGGCTGTGAGAGGCTTGGAACAAGGCTCC-ACCCAGGAGAGATCTGGGTGGGCGTTGGTGACCAGTAGAACCTAGGTGTCCTGGGCCAGTGCCCTTGGAGACTAGTCTTCTTTACCCCAGGCATCTTCTTTATTCTGGAATGAGCCTGCCCATCCCTCAGGAAGACTGAAAGGAATTCGGTCAGAAG s canFam2.chr12 3882314 473 + 75515492 AACCTTCCCCTCTATGGATTGCTAGGTCAGCA-----TAAGTGTTTTCATTTATACTT-TCAGATTATATTCACAAACCATGGAAGCAGTTTCCAATCTCCATAGTTTCCATTCTTAAAAATG----------------------------------------------------------------------CAGGCCATTTGGATTTGTAATTAAATCTGTAAAGGGGGCTGAAAGTGCCAAGTTTATCTCTGCCTCAAGGAG---ATTGATTTAGGGTCAGTGTTACTTCATTTCTTAACAGTCTGGCTCTGAGGCTCGCTGTGGCCATGATCTCTGGGGTGAGC-CTGGTGGAATACAGTCAAGGGGTATGAGAGGTTTGGAAGAAGGCTGGGACCTGGGTAAAGTCTGCGTAGGCAGTGATGACCAGTGGAACCCAAGTGTCCTGAGTCTATGTTTTTAGGTACTGGTCT-CTTCACTCCACTTGTCTTCCTTGTTCTGGAATGAGTTTACCCATCTCTCCAGAAGACTGAAAGGAATTTAGTCAGAAG a score=7121 s hg19.chr6_ssto_hap7 2502743 187 + 4928567 AATATTATTGACTTTTATCCAGACTTG-ATTTCAGT----AGAGTTCTGGGACCTGCCATATCC-TATGGGTGAGCTCTATCCAGGTCCCCTTCCCTGAATTAC--CTGTCCTCTCCCCACTGACTGGGATGACACCTAATTT-----------------TACAACCTGCTGTAGCATCTTTGCTccca-ctgtgacagtaaactccttgaga s canFam2.chr12 3883003 207 + 75515492 GGCATTATTAACCTGTGTCCAGACTTGAATTCCAGTAAAGAGAGTT------CCAGCCATATCTGGATGTGTCAGCTCTGTCCAGGTCCCCTTCCCTGCATTACTTCTGTCCTCCCTCTAACGCTGGAAGTGACACCTAATTTTTAACACGGGAAATTACTACGATATAGTCTAGTGTCTTTGTTCCCATCTTagaccctaaactccttgaga a score=7854 s hg19.chr6_ssto_hap7 2505099 244 + 4928567 TCCCTGACAAGGAGG--ACCCTGAGGGCAACCACACCTTGCCATGCAGAGCACCTGGCTTCTCATCTGCCAAGCTCACTCTGACCCGGCTGCAGGAAGGGAAGGAGCCAACCCCGGACTCAAGACTCAAGGGGACCAGAACCA-GGGAGATGAGACATACCAGGGCTGGGCAGCTGTGGGGGT-CCTTCCAGAGAGGAGCTGAGATACGCCTACCTGGAGGGGCCCCTGGGCCTGGAGGGGCTCCTCA s canFam2.chr12 3988526 231 + 75515492 TCTCTGACCATGAGGTCACCCTGAGG-----------------TGCTGGGCGCTGGGCTTCTACCCTGCGGAGATCACCCTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACAGAGGTTGTGGACACCAGGCCTGCAGGAGATGGGACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCCTCTGGACAGGAGCAGAGATACACGTGCCACGTGCAGCATGAGGGGCTGGCGGAGCCTGTCA a score=14443 s hg19.chr6_ssto_hap7 2517080 374 + 4928567 aagaaaagtgaaATGAAAAGAGCTCTCTTGAAAGGTTGTTGTGAAGGTCATCTGTGACAGGAACAAAAAGTGCCCAGCAGGGTCTCTGACAGCAAGCTCCTACATTAATCTAATGGCTGGACTTCAATAGCCTTA--GCCCCGTCTCCATAAAACTTTGCTATGAAGGCTACAATGATTCCTGTCAGTCAT-GCAGTCCTACTAACCTGCTGGGTAGGATACAATATCGAAGGGGCCAGTATACTGCCCTCAGGGGGCTCTGTGGCCTCTTGACCTTGTGGATGATGCTGACCATAATGTTCTGCTTGTCCCTGGCTGAAGACAGGCCCCTCCAGCAGAGACCAGGCATGAATGCACATCTGAGTAAGACTCTATTA s canFam2.chr12 4030679 331 + 75515492 AAAAAAAGTGAAATGAGAA-AGCTCTCTTGAAAGGTTACTGTGAAGGTCACCTATGACAAAAACAAAAACTGTCCAGCAG---------------------------ATTCAATGG----ATTTCAATATTCTTAAGGACCCACCTCCACAAG--TTTCATATAGAGGGTACAGTAATTCAGGTCAGTCACCTCAGTCCTGCCAATTCACTGGGTAGGATGCAGTA---------CCAGCACATTGGCCTCAGGGAGCTCTGCAGCCCTTCAACCTTGTGGATGATGTTTCTCATACTCCTGTGCTTCTCTCTGGCTGAAAACAGGCTCCTCCTCCAGAAGCCAGACCC-AACTCTCATTTGAAT--GTCTGTATTA a score=1601 s hg19.chr6_ssto_hap7 2517454 37 + 4928567 TGACTCAAGAATAACAAACATAAATAAATAAACATGA s canFam2.chr12 4031198 37 + 75515492 CACCtttaaaaaaataataataaataaataaaCATAA a score=13123 s hg19.chr6_ssto_hap7 2518692 301 + 4928567 TGGTTTATGTATATTTATCTTTATTCCTACATTTCCATGATTATGAGATTCACAGTTCATCCAATAGActtgaactgacccaa--tgcccagcactttcttaagttcttacagatgaacaaagctaatattcacagattctatttatttatggcttaggactacctactgtaaattactGGGGGCCAGTCCATTTTGGAGTTCATAACCTAAAGCAG--AAACTCAGGTGGCTAATAT-GTTAC-TTTCATGAAGGA----TTGTTGTGAGTGTATCATTTCAATTGTCTTGCAGAAGCCTCATTTGTTCt s canFam2.chr12 4031642 303 + 75515492 TGGCTTACAGATATTTACCTTCATTCCTTCATTTCCATGATTATGAGATCCAAAACTCATTCAATAGAATTGAACTGACTCAAATAGTCTTTCCCTTATACCAATTCTCATAGATGAACA---TCCAAATT--CAGACTCTAT---TTTAGAGTTCAGGAATATCTACTGTAAATTATTGGAGGTTAATCCATTTTAGAGCTCATAACCTAAAATAGAAAAACTCAGATGGTAGAAATCCCTACTTTTCAGGAAGGATACTTTATTATTAGTGCATCATTTAGATTGTCCTACAGTAGTCTCATCTGCTGT a score=2128 s hg19.chr6_ssto_hap7 2520122 37 + 4928567 CCTTGTTTTTAATTTACAAAT-GTAATTAATTTAGCTT s canFam2.chr12 4031965 38 + 75515492 TCTTGCTTTTAATTTATAGATGGTGGTTAGTTTAGCTT a score=21036 s hg19.chr6_ssto_hap7 2525425 534 + 4928567 TCCAGTATAGCTCCTGGGCCAGGGATCTCTATCTGCTCCCCAGAGGCTTGTACCTAAGATACAGAGCTCCCTGGGCTTCTCAGTACAGGTGGACTTAAACTAAT-----GGGCTAGAAACAGAGAAAGGGAGGTAGAATTTCCCACTTACAGCCAGACCCTGCAGCACAGCTTTCCAGAGCCTCAGCCCCCCTGCCCTGGCTGATGCTCCCTCCCTG--ACTCCCCTCAC-CAGGG-CCCTGGCCCCACCACACAGCTGAGCTGGCCCAAGCCAAAGAGTTGCTGGAGCAGCAGCTGGAG-TGGATCAGGCTCTGCTGGAGGGG-----------GTGGGGGGCCCAGGCCCTGATGGTCAAGATCCAGAACCTGAAGAAACAGATAAGGAAGGAGGCACCAAGAGAGCCTGGGAGGAGACACCCAAGCTTCCCACCAGTGCCTGCGGCACCCCTCAGCATTGGAAATACTGTGCACCGCCCCCA--GGAACCCCAGGATCAGAAATATCCCAGCTGCTCCCAGGCAACTGGGAAAATGGAAGAGACCACAAAAGGC s canFam2.chr12 4034827 511 + 75515492 TCCAGTTTAACCCCTGAGCCG-------CAAACTGCCCCCCACAGGCCTATGCCTAAGACCAGAAGCTACCCTCGCTTCACAGTACAGAGAACCTTA--TTAATAAAAGGGGGTGGAAATGT-----GAGAGGCACAACACCGGACTTCCAGC------------------------AAGCCTCAGCTTCC-TGCCCTGGCTGATGCTCCCTCCCCTCTGCCCCCCTCATTCAGGGTCCCAGGCCCCGCCCCACAGCTGAGCTGGCCCAAGCTGAGGAGTTGCTGGAGCAGCAGCTGGAGCTGTACCAGGCTCTTCTGGAAGGGCAAGAAGGGGCTTGGGAAGCCCAGGCCCTGGTGCTCAAGATCCAGAAGCTGAAGGAACAGATGAGGA----GACACCGGGAGAGCCT---AGGAGACGCCTAAACTTTCCATCAGTTCCCATTTTACCTTCCAACACTGGAAACACTACACACCACCCACACTGGGGCCTTTGGGTCAGAAACATCCCAGCCCCTCCTAGGCCACTGaaaaaaaaaaaaaaaaaaaaaaGGGA a score=5843 s hg19.chr6_ssto_hap7 2526410 176 + 4928567 AGGTAGTGGGGAGCCAGGGCT-CTGCAGTCTCAGTCCCATGCCTC-------CTTTGA--------------------CTTCACAGCAGTGCACCTCAGCCTTACAGGAATT----TACCCTGGATCATGTCCTACAATAACCTCTCCCCAAACACAGTAAGAAGATGTAGCA--TGCAGATACCACAGACACACATGTGTTCCATTTTT s canFam2.chr12 4035365 205 + 75515492 AAGTAGCAAGGAGCAATGGCTTCTGCAGTCTTAGTCACATCCCCCTCCCCCCCTCTGATCCCTCCCAACTGACCTGAGCCCCACAGCAGGGCACACAGTCCTTATAAGAATGAATATACACTGAATCATGACCTA-----ATCTCACCCCAAACCCAATAAAGGCATGGAGCACTTACAGACACCACAGACGCATGTGTTTTTTAGTTTT a score=36783 s hg19.chr6_ssto_hap7 2526905 883 + 4928567 AAATTCTGACAATC--AGGAATGGGGGTTCAGGAGTGGTGCTGATGCAGAGGAGGGAAGCCATGGGGTGGGGG-------CTGTTAGGGGT-GGAGGCAGTAGTGTCTCCTTCACCCCCACCCTGGGGTCTTCTCCTGAAG---GACAGACTGTCACATCCCAGAATTGGTG----AGTCCTCTACTGTGTCTGTTCAACTGAAGAGAAAATATGGCACAGTCAGAATAAGGCATGAAAAGGGGAAAGTGAGGCAGGAA---------CACACGGCAC-ACATGCAGACGCTGGTGTACTGTGTGGGTTCAGAGGACGGACGTGGGGGTGAGGGAAGGGATGTAATATGATGAGAGAAGACAGAAACCCCACATAAAGGTCAGGAAAACATCCCAACACAG-CATCAAAGGCCAGGGGGCATGAACCAGTCAAGTGTCCATTATGCATCAGATGCCCATGACCTATGTGATGAGATTGAAGAAAAACATACTAAGGTTCAGGGAG------GAACTAAGT--GTTTCATGAGATCAGCACTCACCGTG-GAGGAGACATCTGTCTCATCAGGCAGCTCACTAACACTGACCTCGAAGCGATGCTGCCCATCACACTGGATCCTTGCATGATTCTCATCTGACACAAACGCTGATGGCCAAGCCCT--GTTCCAAACCAGCCTGCTCTAGTCACCTGAAAGGAGGCAGAGGGTAGAAACAGAAGA-CCCAAAGAGGGAAGACACCCAGAGGGAGGGAAGAGGATGTAAGGTGTGAAAAGATAGAAAACATAAGGAATGGGAAGAGTAGGTGTCCTTCTGGGTGTGGGGCTCACC-------------------------------TGTCATTGATAAAGGCAATGTTCATCCACTTGATGTCTATGACGTGGCCCGGTAGGTTGGTAACCAT-AGAACTGGTCATTGAAAATcttt s canFam2.chr12 4035587 932 + 75515492 aatttCCGACAATTCAGGAAACAGGGATTCAGGAGTGGTGGTGATGCAAAAGGGGGAAGCCATGGGGTGGGGGGTGGGGGTTGTCACGGGTAGGTGGCAGTAGTGTCTCCTTCACCCCATGTCTACTGTCGTCTCCTGAAGAGGGACAGACTGTCACATTCCAAAATGGGTGGGTAAGTCCTCTACCGCGTCTGTTCAACTGGAGAGAAAACATGGCACAATTA---CAAGACATGGAAAAGGCAAGGCT-GGCAGAAAACATGCCCCCACCCCCCACTACATGCAGATGTC--TGTAGTTTGTGGGTGCAAAGGATAGACTGGGGGTAGGGAAAAATAAACTAGCTTGTTAAGAAAAGAGA---------CATACAGATCAACTAAACATCCCAGCAGGGGCATCAAGATCCAAAGGACATAA-----TTAAGTGCCTGTTACACACTAGAGGCTCTTTGTGTACATGATGGGATTTAAGACAAACACACTAAGGAACAAGGAGACTGAAGAGTTGAGCCAGTTTCTTAAGATCCATACTCACTGTAAGAGGAAATGTCTATCTCATCTGGCAGCTCACTAATATTGACTTCAAAGCGATCCTGCACATCATTGAGGATCTTGGCATCATTTTCATCTGATACAAATG-TGATGGCCAAGCCCTTGGTGCCAAACCGGCCTGCTCGGGCCACCTGGAAGGAGACAGAGGATAGTCCTGGGAGATCCCGAAGTAGGAAGACATCCAAAAAGAAGGGAGAGGCTATCAGGTATG--AAGATACAAAATCAGGGGGAGGGGACACTGGAATGCACGTGTGGGTGTGGAGCTTACCCGATGCAGGTAAGTGTCAGAATCCTCAGGCATGTCATAGTTGAAGGCAATGTTCACCCGCTCAATGTCCATGCCTCGGCCAAATAGGTTGGTAGCCACAAGAATTCGTCGTTGAAAATCTTT a score=5936 s hg19.chr6_ssto_hap7 2527845 168 + 4928567 TCCTTGGCTTCCTGTTCAGTTTTCCTTA-GGCCTCAGCTGCTGCTATT-GCTGCTGGCTGCTCTCCACATTCCCCT-------------------------------------------AAATTCCAGATGGGTGTGAGGAGGTAAGGGCGGGAAGAAATAGTGGATTGTGGATTGAGGTGCGA---TTTCCCACCACT--------GGAGGGGACAGATtcat s canFam2.chr12 4039228 223 + 75515492 TCCTCAGCTTCCTGGTCAGGTTTCCCCGCGGCCTCCGCTGCCGCCATCCACCGCTGGGTGCCGTCTGCATTTCCCCCGCCGTTCCATGGTGCTTCTCCGCTGCCGGCTCACATCAGCCGAGATTCCGGATGGGTGCGAGGAGGTATGGAC-GGAAGGAGTAAGGGATCGGGGACTGAGGTGCCAAAGGCCCCCACCCCTGGAGGTGGGGAGGGAGCGGATTCAT a score=4733 s hg19.chr6_ssto_hap7 2528112 73 + 4928567 AGGCCCTTGGGTGGTGTTTAAGACCCCTGGCCACTGTGTCCTGGCTGAATGTATACATGCAGATGGAATCTCt s canFam2.chr1 988874 73 - 125616256 AGGCTCTTAAGTGGCACTTAAGCCCCCTGACCATTGTATCCTGGCTGAATGTATATATGCAGGTTGCATATCT a score=25311 s hg19.chr6_ssto_hap7 2554604 807 + 4928567 agaaagacatccttctcagaggaagagttccataaagaattaaaatattccattgaaacattggttgtataaagcaagagtggggaaacaagcatgaagggtgggcttacacaccttcatgagtgtgcttacactt--------gatatga----------AAGTATCCTCTCT-----------------TTTCCTTGTGGATCAGGGGAAGGTGCTGGTGTGA---------TCTATATACAATCCTTCCCAAGGTGGGAGGACACTGGAATGACGACTGTACTttacctcaacttgcttttctc-----atacctgatgcagtggtctcaggact-agggatgcaaataaaagtccagaaacaggaattattcctaagcaagaaactgtaaatatattttgtgtccattatgtaatgattcctaagggtctagagaagtaggttgtgccttcagtgcatctggcaaagttggggttaacactgaatgcagctgtattgcctggggtcagctagccaaccagttctcta-------ctgcataaccctaccctctatgaactggaatggatgatgcaagacaa--ttgctagaacagtattggtccgtgcagtctaggtcagcacagcagcagaacctcatgtcccttccataactagaaatgtttggtataaatgaagagaaggagaaatagtagctgagggtaaatgaatgaataaatgggtta-----tgcaatgaggaaaatccaatgttacatgaactactcaaaagagatataa-gcaagagatgatattgtctcttaactcaattttaccaaatgcctgaacgggtgcagccttatgttgctgagactacttctgtttttggG s canFam2.chr9 19275385 822 + 64418924 agagagcgatctcccttagactactagtttgatagagaattggaatggacaattaaaacatcagttgtctaaaat----ggggagataaaagctggaagggccgacttacacaacttcatgagtgtgtgttcgcattcagcacaaacatgagggctggctaaaggattgtccctactggatagatcttggttttcctcgtagatctgggaaagg--ctggtggggaggaaggtgtcgatattctttcctcctcatg------------------------------tcatttcaaattttgtttctttccgactacttgacgcagtggtcacaggaccgagggctgtaacttcaaagtcagaa-caaggatgattccta-gcaagaaactg-gaacatgttttgaa-cctttatgccataattccttaggtcctgatggggcaagatatatcttcacc-catctgccaaa-ttgggatcaacagtgaattcagctatattacctgatggtaa------aagtagctctctagttgcagctaggtagcattactccatgtgaacgggagtggatggaggaggaggaacttgctagtgtggcattgctgcctgccatctagattagcacagtgactgaacctaatgtcccttccaaaggtagaaaagtttggtataaatggagaaaaggaaatatcatggctgagggaaagggaataaagagatgggctacgtaatgtaatgagggaaagccagtgttacaataacacctcaagagaggttcagtgtaaaagatgatattgtctcttagctcagttatgccagat-cttcaaaaggtgaagcccc-tcttactgaaactacttctgtttctgga a score=3866 s hg19.chr6_ssto_hap7 2561898 87 + 4928567 TAATTTTTCATGACCAAAAAGGATTCTGGTAATGTGCCAGGATCTTCTCACTGTTATGATTCTTCTGGTATAGGAGATCTGTGATTg s canFam2.chr9 19276278 87 + 64418924 TAGTTATTAATGACTGAATGGGATTTTAATAATGTGCCACTGTCTTTTGACTTTTATGATTGTTTTGCCATAAGAGATCCGCATTCA a score=8266 s hg19.chr6_ssto_hap7 2562282 516 + 4928567 TATAAAAAGAGATAATGTGGTCAAAGACCAGGGTGTGAT-CTGTGGCCCAATCAAA-------atatctggtctttttccctgtttcctgacaagcaggttccaaaacatttgcaatctcctcagtg-----------ataagtatgactttaatatgccaatgagatgactatggggtgagaggctcctaaatagcttcaggatgggggctggttgcc-agaaacacgaagctgtgattagaggattggaaatttcagcactatcccttaactctgaga-agcaaagggggctggaagttgagttcagtcaccagtggccattgatttaattaatcttgcctacacaatgaaacttccatagaaacctctagagattgggttttggagagcttcccaattgctgagcacatccatgtgtccatgtgctgggaggatggtgaacctcatctccatggggacagaggctcctgtgctcagagccctccc--agaccacaccctgtgcacctctt-catctggttgctc--atttgtacccttt s canFam2.chr9 19276551 463 + 64418924 GATCTCAAGAGAT-CCACATTCAAAGACCAATGGGTGATACTGTGATTTATAATAAGGAATGTATATTAGATCTTTATCCC--ATTTCTAGCACAGAGCTCTTAAAACCTTTGGAGTTCCCTAGGTATTACAAGCCACAGAAGTAT-CTTTTGTTATGTTAACAATGTGACCTTTGGACTGCA-------------CTGAAGGCTGGGTGCTGGTTGCCTAGAGACTCAACTCTATGATTAGAAGGTTGAAACTTTC--------------CCTCTGGGACATCgggagaggctgtaggtt-aactcaatctccaatggccaatgatttaatccattgtgcctttgtagtgaagcctcca-aaaaccctgaaaggactggg-ttcagagagcttccaggttggtgaaca----------------tgcaga---------------------catggggagagag----cagtgc----agccctccccagaaccttgcctcatgcatcccttccatctggctgtccagacttacacccttt a score=6301 s hg19.chr6_ssto_hap7 2564123 221 + 4928567 AGCAACttcctgagtt-ctatgagttagtttaagaattcccaaaccttgggaggt---gagaaacccctgactttgcagccatgatagacagaagtgcaggtaacctgga-acccgataacttgtgacttgcatctgaagtgaggacagacttgtgggactgagtccttaaacctgtggagtctgaggctaactccaggtagttagtgtcagaattgagtcaaatt s canFam2.chr12 4011619 213 + 75515492 agaattttcctgagtttctaggagtca---------ttctagaactttgagggttctagagttaccccc-actctgtagccaacttgaagaaaagtgcaggtgacatgaatagctgatag-ttgagacttgctcatgagctgtgggcaatcttgcagga-tgaatccttacacctgtgggttcc-atgctcactccaggtcgacaatgtcagaactgaaatgaact a score=1581 s hg19.chr6_ssto_hap7 2564406 27 + 4928567 CCATCCCACAGAGAGAAACTTACAGTA s canFam2.chr12 4012000 27 + 75515492 CCACTCCACAAGGAGAAATTCAGAGTA a score=3141 s hg19.chr6_ssto_hap7 2565474 109 + 4928567 AGAGTAAGCAAGTAAACCTCTACCTTCTTCGGTCCCAGAGGAAAAGATAAAAAAAAATTAAGCATTTATTTCATGTCCCTAAGTCTGCTAA-----ACACAGGTTTCTACCAGC s canFam2.chr12 4012027 108 + 75515492 AGAGCAAGCAAGTAAACCTGTACCTCATCT--TACAAGAGCAAAGGATAAGGCAGAA----GCATTCCTATCATGTCCTTCTGTCTGCAACCAGATGCTCATGGTCCTGTTAGc a score=12683 s hg19.chr6_ssto_hap7 2565583 513 + 4928567 TGTTCATT----------------------------GTCCAGACATGGAGTGGCCCTACCTCTAATCTAGAA------------------------------GTTAGGATTTTTTAGGCCTTTG-AGGGGGTCACATAAAAACTAATAAGTGTCA-GAGATTCTCTCCCCAGAAATATTTCCACACACAAGaaaatataaatattaatataaaaCATCAGTGTGCAACCAGATCCTCTGAGATCTTATAAACCTGGGTGTTTTAATCCCAGTAAG-AGACAATGCCAAGGGAAG-ATGTG-TGAATAATCATTTCACCATCACACCATGCCACTCCAATAATCTG-GAGTATGAACTGGGATAGACAAAAACTTGATGTAATAACTTATTTTCAAGGGAATGGGTGGAAAGATGTTATTTATTAGTCACCAGTTCATTCAGACACTCTGAATCCCTACCAG--ATACTAGATAAATTTCTTGTCTTGGAGCACTGCTCCAATAATTAAAATTTATCATTCTTTTCCCATCCTTCACACTCCAGCACTTGAACCCTCTTACTACAT---CAGAATTCCACACt s canFam2.chr12 4012461 567 + 75515492 TTTTCATTTTCTCAGCCAAACTGTTGTGAATGAACAGTTCAGACTTTGAGGGACACTATAGCTACACTAGAAAACCAGGCTGGTGCTCTGAGTTCTTTCACTGTTTGG--TTTTTCATCCTTGGCAAGCAGTCACATAAAAGCTGATAGATGTTAAGAGATTCTCTCCCCCAGGATGTCGCCAGGCACAAGGAAATATAAACGTCAGCATGACACATTGGTACCCACACAGACCCATTGAAGTCGTACAGACCTGGGTGTTCTCCTCTTTGCAAGGAGCCAAAGGCAGGGCAAACACATCCTAAGTCATCATGCCACCAGCCCACAACACCATTGCATGTATCTGTGAGCGAACACTGGAGTGGACAAAAGCTGGATCTAATCATGTAGTACCAAGGGAATTAGAAGACAGGTGTCATTTATTAGACACTTGTTCCTTCGGTCAAACC-AGTGCCTACAAAGCACACCAGATCAAGTTTCAGCCTCAGATCTGTGCTCCAAGAATGG------------CTTTCTCCATCCCTCTCCATCCCTCACCCCAACTGCCTTCCTACATGAGGAGAATTCCAAATT a score=1799 s hg19.chr6_ssto_hap7 2566730 112 + 4928567 TAAAGTGTTAAGAGGAGATAGAAACCACCCCCATCCCTAGAAGAGCA----CAACACTCCAGTCACCCCTGCAGTTGATAATGGACATGAGTCTTAAACTCCATCAGTCAGATGAC s canFam2.chr12 4013028 103 + 75515492 TAGGGTCTTTAGAAGAG------ACCGCCTCTCTCCACAGAGGAGGAAGTCCTattttcccaacatccttctagttacacacag-catgag------actccaccaaacaggtgac a score=15485 s hg19.chr6_ssto_hap7 2567199 886 + 4928567 ctcactacctgcctaaataatttcttcttaaatcctatatcaCTGccagactctgagctagaatgaggtgacacagaaaggctgggattgtgcagaatgcattttagtaaacatggctgagtgtcagtagtgatgtccagttgccaggggcagcagtgacatctatcctagccttggggtccagtgtccagcaccag-gatgtcagaggtatgagcagtggtgtctgtgctcagcagcaggggcagttgttcctaggagggacctgatccaggggcgtg-ggctatggattcttttctgggatgtgtagttttcagcctggttctgtggccttcccCACAATAAAATTAACCCCCAATACCAGGTATA--------------------CTACTTTATGTATAAATTACAG-AAATTTGTTTTCCATAGTTTTCTCCAAGAGGTGAGTGAGAAATGAATCTATGGACCAGGGTCAGAGAGC-AGCATTCGGAGGTGTTCCTTGTG------TGACAGCCACATCCTGAATTGTCTACCTGGCCTCTACCTCATGGTGGAGAGAT-CAACAGGGATTATCACATC---TCTTA-ACTGATGATATACATCCTCCCTTTCCTTTCTGCAAG--AAAAATCCTCTTTTAAACAGGGTTTGAAAACCCACCCACCCACCCTGGGCACTCTCTGATCTCTGA-------GGTTCCTGAT-----CT--GGCTGAGCAACAAGATTTCTGGTGGAG--GCTTAGAAAATACTCAGGCCACTCCTCAGAACCCCTGTCTCACAATATTATGCACAAGACCAAGGAATCATTTACATAACAAGCCCTACAGGCGAGGCCGATGCA----GACGTGGG-GTCCTGGTG----TTctggctactccaagtgtgatctggagaccagcaatgtgagctccagccttgtcataaatccaga s canFam2.chr12 4013147 860 + 75515492 ctcacgacct--------------------------------------------------------ggggacagagagaagctgccactatgcagaaggca--tgggcataggtggcaggatggcagt-gtgtcatccagtc-ccacaagcagcagctatggcagtcccagccaagggggccagtgttctggattaactgagtcagtggtgtgagcagtgacaactgtgcccagcagcagaagccatggttcctgtgtgagacctggttta---ctgtgcaattgtggattctgttcctggctgtgtag-cctaagcct-gTGGTATGATTTTCCCCCAAACAATATTTTATATACATAGAAGACATAGATAAGTATGTATGTATCCCCTATCCTTTGTCTAAGTTCAAGAAAAGTTGGATTCCATTCTTTGCTCCA-----------AGAAATCAATCAGAGGAATAGTTGCAGAGAACAAGCATTCAGAGATGTTTGTCATACTGAACTGTGAACCGCTCCCTAATCCTCCCACCTGACC-ATATCCCATGATAAAACAATGCCACATATCTTACAACAGCATGTCTCATACTGACAACAAA-----TGCCTTGTCTCTATGAGGGGAAAAAGTCCACATTTAAAAGAAACTTGAATGCCCTC---CCCACCC-AGGCTTGCTCTGATCACGGATCGCAGTGGTTCCCGCTGAGCACTAggatcaagcactaggatcactcatgcagcttctcacaaaatgcacaggcctctccccagactcagagactcagaatattaggcacaagatcaaggaattgcctgtttaataagccctacaggtaaggctgatgcacAGCCACATGGGAATCTTAATGTACATTCCTGCTGTTAAAAGTATGATGTGAAGACCTGCAGCA-GAGTAGCA-CCTCGTGAAAAACACAGA a score=8417 s hg19.chr6_ssto_hap7 2568085 471 + 4928567 atcccttgctcgactccagacttcctggatctcagcaccacatccaggtgatcctggtgcacaCGGGAG--------TTCCTTGTCTAAGCGTCCTCTAGACGTGGGGCCAGAACTGTGCAGTCTGCTCTGTGG--------TCTGATCAgatcccttagaactg-gaggtccagggttcagtccttgcgctgattcttttccacagtcaatcactcccttggtg-cttcatccatgcttgaggttttaagtattgtttatgtggtgtgagctcctaaatctatttctccagcccagtcctttcccctgaactgtggagttgtctgcccagctgccaccccagctcccccacctgcattcctagtagac--------atctcctccactgagtgcctgtgatgccccctcctcaggatgctcctgccagagtctccc-catctccactgacagcagctccacccttccttctactcactcattttacaactatgggtg s canFam2.chr12 71521855 453 - 75515492 atctcacactgtgctccagcctctctagatcTGCACA----GTCCAGGAAATCCCTGTGCTCACTGAAGGCTGGGCCTCTCTGTTCTATGCACCTACTAGATGCAGAACCAGA-CAGAGCAGTACGCTCTGTGGGGGTACGCTCTGATCAGCTTGCTTAgccccgagcagtccagggattgggcctgttcct--ttctcttctatggcca-tcacacccttggtgtcctcatctctgctgaaggctctgaaactgattgatgtggagccacttcccaagtataattctccaatcttgatatctc------------------tgtatccaactgacatc-----------agctgcatttcttatagcccagattccacattcctaagtggatgtctgtgatgctgcttcc-caatgtcctgattccagtgtctccttcatctccatggaaggca-ctgcacacttctccttgc------agtctgaaataccggatg a score=13710 s hg19.chr6_ssto_hap7 2568556 639 + 4928567 tccttgattcgtctttctcacaccacagatacaatccattggcaaatgctgtga-gtccatcttcaaatgcatccagaatcccctcacgtcccactatttcctgtgctcacaccccaga-----------catctccagcctggaatactgcactcgattcctactgttttcccttctgcctccctcatccctcacctctcaattctgttctcagcacagccatcagagatccttttaagaaagaagtcatatcatggctctcttctgctccaaactgtcctctaactcccccatcccactcagagcagaggtcagacgcaaccccactcccctcaagccc----acctgc--tctggccatacctctgacctcatctagtttctctg-tccagccctcctggcctccttgctcttctgggaacacag-acaccttcctgccctagtgcatttggactggagtttccttgcctagaaagaacttcccc-agacatcctcatgtcc--ctcaaatctttc---ctcaaaggtcatctttgcaacaagccacacattgacaactcctg---tccaacagccaccttccctgtcccca--ctgcccatacccggatcacctgcctcatggcacttaccaccttccat------cactttcttttcttactgtggttata s canFam2.chr12 3892575 633 + 75515492 tccttgatccctccctctcaccccccagaaggaatgccttaggaaatgctgcaaagttcacctgtaaacatatccagcacccactcatttcctattatcttcccc-cccacactccagatgttcagcccccatccccctcctgggacactgccct-gggtcctacaggtt-ccctactagttgctcc--ccttcacctctcaattctgcacgcagcaaac-------aggtgctggtaaagaa--attcaatgaattgatctgttcat----------tcttataactccac-atctcactcagagaaaactcaaaaccc--ttctactgtcctcaggctccatgacgtgacgtcatgtcatcccccttgc-----------tctctgctccagccccaggggcctcctcaccctccctcaaacatgggacaggctcctgccctggagc-ttgagcatggaggttccctgcctggaaagaacttcccccagacatcctcctacacaattcatgtcctccactctcccaggtcaccttctcagggaggctcccc----caatccctgcagtaaggtggccaccGTCCCTGTCCTAGAGCAGGTTCTCTCTGGGTCACCTTCCTCAAGGCTCCTACCTACTTCCAATGTCTACACCTCCCTTACTTACTGTGCTTaca a score=6824 s hg19.chr6_ssto_hap7 2569211 579 + 4928567 cctcttaccactgaagcatatgctc----agat------atttttccgattttacttcaatggtgttccccagATGCAGAACTTTTCTGTCCTGTGTCTGGC---TGACAACAAAGGTCAGTTGAATGATCAGTGTAGAGCACCTCCTATTCTAAAGCCAGTATCTTTATTAACATAGCCTCAGGCCAAGTGCTGTTTTGTGGCAGCTGCAGCACAAGGTCCCCTCA--CACTGA-CACCGAGGCCGCCTGTACTTTTCTCAGCAGGGCTGCTTGTGTGTCCTCCCTCCCCTATCCCTC-CTCCCACACCAACCGCCCCGCACACTGCAGCACACAATCAGGTTTCTCTCTTCAGGAAGGAACAATTCTAGACT--ATGGACCCAATTTTACAAACAAATATAAATCTAAATTAGGCTCTGCTTTAGATTCATGAGTTGGGATTGGAGTCAGCACGAAGATTACTGGAATCAGGGAAGGGAGAGAGGGCAGGAGACCA----AAGCAGAA-------------------GAGGAG---------------CCCT----------------------------------------AGAAGGAGGGCAGGAGCTGAATGGGTCTGAAAATTTGTCTC-AGAAAGCACAGGGACTCCCGTGTGCAGGGGCTGCCCTGGGC s canFam2.chr12 3893551 620 + 75515492 CCCCCGACCACTAGAACATACTCTCCAGGAGACCAGCAGGTTTGCCTCACCTGAGTCTCACTGAGCTGCTCAGATGCAAA--CAGTGTGTCCTGCATGTGACACAGGACAGTTACAGCTGAATGAATGCGCAGGAAGAGGGTCTCCCTCTTCTAGAAGC------------------GCCTGGGGCACAG--CTGTTCTGTGGCAGCTCCTGCCC-----CCCACCAGCCACTGGTCATCAGTGCCCCCTCT-CTCTCCTCA-TGGGGCTGCCCCCA---CCTCCCTCCCTCAGCTCCCACCCCCACACCGTTTCTCCTGCACAC---ACCACGCA--CAGAGTTCACTCCTCAGGCAC-CGTGCCCTTGGGCTTCCTGGGTCCTCTTCTCCAGCCACAGAGAAATCTACGTTACACTCTGCTTTATA------------------AATCC-CACAGGGATCACGGGGCCCAGGGCGGGGAGGGAGGGCAGAGCAGCAGGGGAGGCAGAAACTCCTGGACGCTTATGAGGAGGAGAACCTCTGACTTCTCCCCTCTCTACCTCAGGATGTGAACAATAATCCAGAAAGCAGCTGGGGAGGGAGGGGGAGACTGGATGGATCTGGAAGTTCATCTCTCCAAACCTCGGGGACTCCTGTGTGCAGGGGACGACCTAGGC a score=3333 s hg19.chr6_ssto_hap7 2569790 63 + 4928567 GATGTGTGAGCCTCTGTGGTCACAGCTCCCGCTG-GACAAGTTTCCACTGAAGGGACAAGGACA s canFam2.chr12 3894417 64 + 75515492 GACGTCCAAGTCCCTGTGATCACAGGTCCTGGTGAGACAAGCTTCTATAGAAGGGGCAAGGACA a score=136832 s hg19.chr6_ssto_hap7 2569854 3808 + 4928567 TGGAGCAGTGAAGGTGACCCAGCTGAGGACTGACCACATAAAGCCCATGAAGAACTGAACAGCAACTAGGCACAGGCCCCGTCCACACTCGTCTCCTCACAGCCTTCCCCACCCCCACCTGCAACAGACTCAGCACAGCGAACATGCGGATTCTGGAAGGTTCTCAGGTCTT-----TATTTGCTCTCTCAACTTCCAGGAATTGACTTATTTAATTAATCCATCAACCTCTCATAGCAAATATTTGAGAAAACAAATTTATATTCAGATTCTTATTTTCAGTAGGGAAGTAAGAAGTTGCAGCTCAGTACACGTAAAGTTGAGACAGAGATGGAGACA-TCCAGCCCACTTCTCTG--GAACAGGAAAGATGATCGGGGAGG-GAACACAGGTCAGTGTGGGGACAGGGGTCACGGTGGACACGGGGGTGGGCTG-TCTCTCCACCTCCTCACATTATGCTAACAGGAACGCAGACACATTCAGATGCC-TTTGCAGAAAGAGATGCCAGAGGCTCTTGAAGTCACAAAGGAAAGGTGTGAAGAAATCCTGCATC--TCAGTCCCACACAGG-CAGCTG-TCTCAGGCTACAGAACACAATAGTCATGAACAAATTCAGGTCAGTCATGGTAAGTGATGACACTCTGAACAGCTCACCACACATTCGAAACGTCCCAATCAAAGGATCCCCATTACCTAGGCCTTTTCCCTCTGCCCCACCCCCGACCACTTCAGC-TCCCCAGAATCTCACCTTTACAAGCGATGAGAGACTCATCAGAGCCCTGGGCACTGTTGCTGGCTGGGGTAGAACAAAAAAAAAGACCTGGTCAGAGCCCGCAGGAGATGTGGGAC---AAGAGGAATTATGGGGTGGGTGAGCTCC-------------TCCACACGCCC--------------ACCGCCATC-----ACTTACACGCAGCCTGAGAGCAGCTCCCTCCTTTTCCACCTGTGGGAAGAAAATGCCCTGTGAGGGGACAGGGAGGAGGCAGGGCCATGCGATCTTAGGGGAACCTCCTAGTCTTGGACCCAAGAGAAGTTTCCAGAACTATGACTGCAGACCCAGGGCAGGATCAGGAAACACGGGGAAAGCAGCTGTGGGTTC--TGGAGCAACTGCCCTCCTA-AGGTCTGTCCTTAGCAGGGACCTTCC--CCTGACTCATGAATGCTGG-AATCAAGGACCCCAACACCATAATCATCAAGGTGATACATCTGTCCTTCATTGTC--ATGTGCTTCACAACAGAGTAAGTGCTAGCACACAGGGTCCCAGGCTGGGATGGC--CCATGTGTGGATGGTGCTTCCAGT-AACGAGGTGGGGCACACTTCTACCTGGGGCTTGAAACTCCCAGTGGGACAAGAAAACCCAGACCCCACTCCTCACCCC-TTCCCTACCTGAGCTCTTCCTCCTACACATCACAACAGCCATCACAGCTCCTag-gacagctaggacagccaggacagccaggccagcAACGATGCCCACGATGGGGATGGTGGGCTGGGAAGATGGCCCTGGGAAAGGAG----GGGAAGGTGAGGGGCCCTGACCCCCAAGCCTCAGCCCTGACCCGGCTGAAGGGCTCCAG--GACTTCTGCTTTCCCTGAGAAGACACATGACCCCTCATCCCCCTCCTTACCCCATCTCAGGGTGAGGGGCTCTGGCAGCCCCTCGTGCTGCACATGGCACGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCTGCCCACTTCTGGAAGGTTCCATCTCCTGCTGGCCTGGTCTCCACAAGCTCGGTGTCCTGAGTTTGGTCCTCGCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGGCCCAGCACCTCAGGGTGGCCTCATGGTCAGAGACGGGATGGTGGGTCACGTGTGTCTTTGGGTGTTCTGACG-GGAAGAGTCAGAAAATTCAGACACTTTGTATCTCT-CTTGCGACACTCCAACAGTGCCCATGTGACCATCCTGAGAATGGACAGGACACCTGGGGTG-GGGAAGGGGGCACAGAACCCAGACGCCAGCCTGGACACAGGCACCTGGGATAATCTCCTATTCATTGGAAAGTTCTAGTCTCTGAGGGAGGAAC-------------------------------AGCG-ACTTCTGGTCCTGACCTGAGTGGAGGCCGAAGGACTCAGAAAAGCTGGAATCAAACCTTTAAACACATTGAGCGTGAGGCAGAGAACAAGGCCTGAGAGAAAGGTCAGCAGCCTGACCACAGCTGCTGCAGTGGTCAAAGTGGTCAAAGGGGACCCCTGATCAGTATTCCAGGGACTGTCTTCCCCTCCATTTCCTCAAGGACTTCATCCCTTAATTGTCC-TAGAGAGCAGAGG-----GGGC------CCTCAGAAGAA--------ACTCAGGAAAACTCATCCCATTCTCCATTCAAGGGA-GGGCGATATTCCAGCGCTGATCCCATTTTCCTCCCCTCCTCGTGGGAGGCCATCCCGGGAGATCTACAGGAGATGGGGAAGGCTCCCCACTGCCCCTGGTACCCGCGCGCTGCAGCGTCTTCTTCCCGTTCTCCAGGTATCTGCGGAGCCACTCCACGCACGTGCCCTCCAGGTAGGCTCTCCGCTGCTCCGCCTCACGGGCCGCCTCCCACTTGCGCTGGGTGATCTGAGCCGCCTTGTCCGCGGCGGTCCAGGAGCGCAGGTCCTCATTCAGGGCGATGTAATCCTTGCCGTCGTAGGCGAACTGGTTATACCCGCGGAGGAGGCGCCCGTCGGGCCCCAGGTCGCAGCCATACATCCTCTGGAGGGTGTGAGACCCTGGCCCCGCCCCCGTGGTCAGCCCCGTCCCCCGAGCCCCGCCCCAGCCCCGACCAACCCGCGGGGATTTTGGCCTAAACTGAAAATGAAACCGGGTAAAGGTGACTGGGGCTCTCTCCGGTC-------------GAGGGTCTGGGCGGGTTCCGCAGCCTCGGGGTGGATCTCAGACCGGGAGACTCGGGGCGACCCGGGCCGTCCGTGGGGGATGGGGAGGGGTCGTGACCTGCGCCCCGGGCCGGGGTCACTCACCGGCCTCGCTCTGGTTGTAGTAGCCGCGCAGTTTCCGCAGGTTCACTCGGTCAGTCTGTGCCTGGCGCTTGTACTTCTGTGTCTCCCGGTCCCAATACTCCGGCCCCTCCTGCTCCACCCACGGCGCCCGCGGCTCCCCTCTTGGACTCGCGGCGTCGCTGTCGAACTGCACGAACTGCGTGTCGTCCACGTAGCCCACTGCGATGAAGCGGGGCTCTCCGCGGCCGGGCCGGGACACGGCGGTGTAGAAATACCTCATGGAGTGGGAGCCTGGGGGCGAGGAGGGGCTGAGA-CCCGCCCGACCCTCCTCCCTGCGCGGCTCCCCGGG-----------------------------------------------------------------------------------------------TCCTGCGCCCTCGCCGGGCGGGCCCCTCGCTCCTCTCCGCAGAGGCCGTTTCCCTCCCAACCTCGCACTCACAGGCCCAGGTCTCGGTCAGGGCCAGGGCTCCCGAGAGCAGCAGGATGAGGGTTCGGGGCGCCATGACCCGCATCT-CGGCGTCTGGGGA------------------GAATCCGAGTCCGGGTGGGTGACTGGGGACTTTAGAACCGGGACTGCGGAGACGCTGATTGGCTTCTCTAGAACC-CGACACCCAATGGGAGTGGGAATTGGGGACGCGTCATGAGTATTCAGGAAGAAGGACCCGACGCAGGTTGGAAGA---AGAAGTGAAACTCAGGGGAGTGGAGAATCCTCAACGCGGCGCCTCCCCAGTGCAGACACGGCCCTTGGAGCCTGAGACCCTGAGAGCCCCGCCCGGGACCTGGGACTTCGTCCTGATCCCTCTTCTCCTACACCAAGCATCTTTGTCACACTGTGTGCCTGAGTCCTGGCCAAGGATCTG s canFam2.chr12 3895419 3808 + 75515492 CGGAGCAGAGA-GATGACCCAGCTGAGGGG----CACA-----CCCAGGATGCACTGAGCACCTACTGGGCACAGGCCCCATCCCCCCTCGGCTCCTGACACCTTTCA--GCCCCCAACTTCAACAGACTCAACACAGCAAACATGAGAGTTCTGGAAGGTTCTCAGGGCTTCCATTTATTTGCTCTCTCAACTTC-ACAAAT---CTCCTTTTATTACCTCATCAGCCCCACATCCCAAGACTCAGGAAACACAAACTCATATCGGGATTCTTATTTTCAATCGGGTAGTAAGTTATTAGTACTCA----ACATGAAACAAAGACAGGGATGGAGATGGTCCAGCCCTCC-CTCTGCTGGACAGGAAAGCACATCAGAGAAGAGAGTGCACATCAGATTAGGGACAGG--TCATGGTGGGCA---GGGTGGGCCAATCTCCCCACCTCCTCACATTATGCTCCTAGGGACACAGGCACATCCTGACACTGTTTGCAGA--GACAAGCCAG-GGTTGTTGATGTCATCACGTGA-GATGTGAACACATCTTGCATCGCTCAGTCCC-CACAGGGCAGCTGGTCTCACACTGTGAGA---AAAAATCAAGTACAAATTGAGGTGGGTCACA-TAAGTGCTGACATTCTCAACAGCCC-CCTCGCGCTC----------------------------ATCTGG-----TTCCCAGTGCCCCAACCCTCCCCACTTCAGGGTCTCTGGGGTCTCACCTCTAGGAGCTGTCAGAGACACATCAGAGCCCTGGGCACTGTCATCGCCTAGAGGAGAATAAACAG---GACGTGGTCAGAGCTCACAGGAG--GTGAGACTAAAGGAGGAGCTGTGGGG---GTGAGCTCCCCATGGGGTCCTGTCTACACTCCCCTGGGGTCTCAGGGATTGCTCCCTGCATACTCACGTGCAGCATGAGAGTAGCCTGGTCCTTTTCCTCCTGTGGGAAGAAAACATCATGTGAGAGGCCGGGCACAGGGCTGGGCCAGGAGATCCTCAAGGAAGCTCCCAGTCCTGGTGCAGAGTGA-GTCTGCAGAATTCTGACTGACCGCCCAGGTCAGGGTCAGGAGACA---AGCCATGAGGTGAGGGGTCACTGGACCACCTGACTTGCTGGAGGTCTGTCCTCAGCAGGGGCCTTCCGCTCTGTCCTGTGACGGCTGGGAATCA--GTCCCCGTCACCAGAATCACCAAGGCGAAAC-TCTGGCCTTCATTTTCCCAAGTGTTT-GCTGCACAGTGAGTGTGAGTACACAG--CTCCAGTGTGGGAGAGTAATCGCGTATGGACGGCACCTCCCGTTAACAAGGCAGGACAGCGTGCTCCCTAGG-----AAACCCCCAACAGGACAGGAAAACACAGAG-----TATTCAGTCGGTTCCCTACCCGAGCGCTGCTTCCTCCAGATCACAGCTCCAATCAC----CCCAGCGACCACGAGGAGAACCAG------------AGCAGCAATGCTGACGATGACTATGGTGGACAGAGGGGAAGGCTCTGGAAAGGGGACGGAGGGAGGATGAGGGTCC---AGCCTCTGGCTTGAGACCTGACTCTGCTGAAATTCTCCAGAAGAGCTCCACTTGCCCTGAGTAGAAGCTCTACCCCGAGGCCC--TCCTTACCCCATCTCCGCGTGACAGGCTCCGCCAGCCCCTCATGCTGCACGTGGCACGTGTATCTCTGCTCCTGTCCAGAGGGCACCACCACGGCCGCCCACTTCTGGAAGGTCCCATCTCCTGCAGGCCTTGTGTCCACAACCTCTGTGTCCTGGGTCTGGTCCTCCCCATCCCGCTGCCAGGTCAGGGTGATCTCCTCAGGGTAGAACCCCAGCGCCCAGCACCTCAGGGTGACCTCACGGTCAGAGACGGGGTGGCGGGTCACACGTGTGCTGGGGGGTTCTGAGGAAGAAGAATTGGAAAACCC--ACACTTTGGTTAACTGCGTGGTCCACTGAGACTGCATTTGTGTGACCATCCT-AGGGTGGACAGGGCAGTTGGTTCACTTGGAAGAAGCACAAAGCCCAGTCACCAACCT-------AGCCTTTGGGATG---TCCTAATCTTTAGAAA-TTCTAGAATCAGGGAGAGAGTCCAGGGTAGGAGGCTGCAGGTCTAAGGTAGAGAGCACACTAATGGTCCTGACCATGGTGGAGGCTGAAGGAGTCAGAAAACTCCGAGTTCAAGCTCCAAATATGTT-----TTCATTGGAGAGGAAAGCCTTGAGGGAAAGTCATGGTCCTCA-CAAGGCTTCCA-------------GGTCAAAGGGCACCACTGGCGGTTATCTCAGGA--TGGCCTCCACCTGCCTCCCGGAGACCCTGGATTGCTCCATTGCCCTTCGAGAAAAGCGGCCTCTGGGTGAGTCACCCTAGTAGGACTATCAACACCCAGGCGGAT---CCCCTGTCCCCACCCGTGGGAGGGGCGGTGTTCTGACCCTGAGTCCATAT---TCCCTTCCTGGAGGGAAGCCCTCCCTAGTGG---AGGCGAGATCGGGGAGGCCC----GGGGCCCCGGTACCTGCGCGCAGCAGCGTCTCCTTCCCCATCTCCAGGTACCTCCGCAGCCACTCCACGCACGTCGTCTCCAGGTAGTTCCTCAGGTGCCCTGCATCACCTGCCGCCTCCCTCTTGCGCCGGGTGATCAGCGCCGCCGCGTCCGCCGCGGTCCAGGAGCGCAGGTCCTCGTTCAGGGCGATGTAATCGGCGCCGTCGTAGGCGTCCTGACTGTACCCGCGGAGGAGGCGCCCGCCGGGCCCCAGGTCACAGCCGTACATGGTCTGGATGGTGTGAGACCCTGGCCCCGCCCC----GACAGGCC---------------------------GCCAATC------------AGTCCAAAGAGAAAGTAAAACC---------TCCCGGGAGTTCCCGCGGGTTCGGGACGGGGACGAGGGGGAGGGGCGGGGGCCTCGGACTCGGGGTGACGCCCGGACCCGGACCCTCGGGGCGACCCGGCCGGTC--GGGGGGATG----GGGGTCGTgccccg-gccccgggcccgcgccgcTCACCGGCCTCGCTCTGGTTGTAGTAGCCGCGCAGGGTGTCCAGGTCCACTCGGTACAGCTGTGCGGTCTCCTTGACTTTCCGCGTCTCCCCGTCCCAATACTCCGGCCCCTCCTGCTCCACCCACGGCGCCCGCGGCTCCATCCTCCCAGTGGCCGCGTCGCTGTCGAACCGCACGAACTGCGTGTCGTCCACGTAGCCGACGGCGATGAAGCGGGGGTCCCCGCGGCCGGGCCGGGACACGGAGGTGTAGAAATACCTCAGGGAGTGGGAGCCTGCGGAGCCGACGGG--TGAGAccccgcccgaccc-cctcccgccgcggggcccggggcccaggggagatgcccggggcggggcggaggcgggagggaccggggagcccaggccgcggggggccgggggcggcggAGAGGCGGCTTCCCGGGGTCCCGCGTCCCCGCCCGCCGGTCCCCTCGCTCCCG--------------------------CCCGCACTCACCCGCCCGGGTCAGGGTCACGGCCAGGGCCGCCGACAGCAGCACGAGGAGGGCTCGCGGCATCACCACCTCCATCTCCGGGCTCCGGGGACACTGGCCGTCGCCGCTGGACTGGGGGGCGGAGGCGGCGGC-GGAGGCTTTAGAGCCCGGGACCCGGTGCCGCTGATTGGCTCCTCCAGAAACGCTGCACCCAATGGGAGTGCGCGCTGGGGCTGCGTCACGAGTCTCCAGGCAGGGGGCCCTGAGCCAGGTTGGGAGACGCAGAAGTGAAACCCGGGGAGGTGGGGACTCCCCAGC-CTGAGCGTCCCCGCCCCGGACCCG--CCCTGGGGCCTGAGAGCCTGAGAGGCAGTCCGGGGTCCCGACACCTTGCCCTGACTCCTCACCTAGGGCACACAGGGCTCTTGTCGCACTGTCTCCCTGAGTCCTGGCCCGGGAGTTG a score=20255 s hg19.chr6_ssto_hap7 2573662 1065 + 4928567 TCTGTGGAA---ACCAGGGAGAGACCCCCAGGCTGCGCCCAGCCCCT--TCCCCTTCACTTCTCCTGGAATCCCCGTCCCTGAACTGGACTC-CCTGCCTCCCACTCTTTGCCTTACCTTACCTCAGGTAATATTAAACTACATCCAGCAAAATAAAGGACACTTACCTCTCCCCT--TGGACTCTTGTACAGGGAAACTCA-CCATGGGGAACTTGATGCCAGACAGTGAGCTCGCCCTGGGAATGGACGTGTAGAGTCAGGAGTTTTCTCTTTAAACCTGGTGAAGTTTTGTCTGAAAGCACCAGGTAGAGATTCTCATAGAGACCAGTTTCCTTTTTGTTTATTGATACAGTAGGTAGCACAATATTGGTAATCCCTGAATGATTAGAATTCCAATCTGTGAA--------------------AGACCTGTGTCAAAACTGCATTACAATTAAATTCTCAAAGCTCCTGTTTTACTTTCGCAGACTATGGATCTGTGACTCTGGGTTGTTGCATTTAAAGTTATCCTCATTCTCTAGCCCGAGTTTCCTTGTGTGAGTCCAGAACATCTCCTGAATACAAAGAAGCAGGGTTTGTTACTGTCTATTGCAACCGGGAGCCTGTA------GTCATCACCTCAAAGTTGCGAGGGCTCAATGCAGTCCCAATGCTCTTCACCAGCGCTCCAGCACTGCCCGTTTTCCGGAACTATGCACATCTAAGCAGTGTGCATATTTTATTTGGACACTTGATATTTTTGTAACCCCTTTTTTAAAAAAAATCATAAGGAGGCCATTAGTTTTAAGGCAGTCACACAAAAGGTATTAAATACCGAATGCAAAGAACCCCCTGCCAGGCTC-----------------------------------------------------TTCTACTGCTTTAGAATTCTTTCCTCTGCTCCTTTCCTCACCTCCTGCTTCTCCAGCCCTTCTGTCTGCCCCTCTCATCCCTCACACCCTCTTTCCCCTTTAGTCCCCGCCACCCTGTCACTCCTGAATTGTGGCACTAACACTGTCCC-TCACCTCCTGCCCATGTCTGTTCTCCCCACAGTGCTCAGCAGTCCTGCTAATGTGACTCAGGTCGTGTCATTTCTTCACTTACAatg s canFam2.chr12 3915644 1030 + 75515492 TCTGAGGACACTACTAGGGAGAGACTCTCAGGCTGGACTCTGCCCCTGGTCCTCACTGCCCTTTCCAGAATACTCG---CTGAACTGGACTCTCTTACCTCCCAC-------------------------------------------------------CGCCTACCTGTCTCCTTCTGGACTCTTCTAGGAGGAAACGCATCCCCAGGGACTCTGACAGCACACAGTCAGCT-GCCCTGGGAGCAGAGATGGAGAGACAGGGCTTTTCTCTTT--ACCTGGAGAAGCTGTGTCTG-AGGCGGCAGCCACGGAGTCCCACTGAGGCCCGTGTCCTTCCTGTTGACC--CCAGGCGTGCTGCACAACCTC-CCAGCCCCTGAAC-AGTGGCAGTCTGATCTGTGGGGTGACTTTGGCCCTTCCTGCAGACAGGGGACCATACAGCA--GCGCTCAGACTCACAGAGCTC---TTCCGTTGTCCCAAACGCTAGATCAGTGAC----------CGCGTCCCGA-TTACCTCCATTCCCGAGCCCCAGGTTGTCTGTG-GCCTCCGGGACGTCTCCTCAGGGCACGGAAGCA-CATCTGTTGCTGT-TATTTCAGCT-GAAGCCTGGACAAGCGTTGATCACCTGGAAGTGGCAAGTGTTCTGGGCCGTCACCGGGC-CCTCACC-GCGTCCACGCATTGCGCGTGT---GGGA--AGGAACGCCAAGATAA-GGGCATA-TGTATTCCCGCTCTGGGTATTAT--------CTGATT--------ATCATAAGGAGGCAATTGGTTTTCAGGCAGCCGCACACAGGGTAGCACGTACTAGATGCC---AACGTCTTGCTAAGCCCTGTAGATAGGAATTTATTAAAAATCTGTATAACTACGGATTTAAACGTGAGGATTCCACTGCTGTAGAACCTTCACCTCTGCTTCTCTCCTT-CCGCCTATGTCTGCAGCCCTTCTCTCTG--TCTCTCATCCTTCAGGGCCTCTTGTCCT-----GCTCCACC-CCCTCTCActcctg-attggggccctgctgccaccccaacacctgccacccagggccactttcaccacccagaacagcaattctgctgatgtgagtcaggttgtgtcatgtcttcactgaaaatg a score=2705 s hg19.chr6_ssto_hap7 2576788 45 + 4928567 TATATGAAAC--GTGACTGTTTATAATCCTATCCAAAAAAGAACTGA s canFam2.chr30 19353542 47 + 43206070 TATATGAAATATGTGACCGTTTATAATCTTATCAAAAAAAGGCCCGA a score=6557 s hg19.chr6_ssto_hap7 2576833 100 + 4928567 TTTCAAGCAACAGCAGTATTACTTCCATTCAATACTTGGACCTGCAAACATCAAAAAAGCCACTGGAGAAACTGAACGACTCTCTGAAAGCCTTAAACTA s canFam2.chr30 19358039 100 + 43206070 TTTCTTGTAATTTTAGGACTACTTTCATTCAATACTTGGACTCGCAAACATCAAAAAAGCTATTGAAGAAGCTGAAAGACTCTCTGAAAGCCTTAAACTC a score=11334 s hg19.chr6_ssto_hap7 2576933 165 + 4928567 AGATATGAAGAAGTTGAAATCTGGAAAAAACTTGAGGAAAAGGACAGGCAGGGGGAAGCACAGTGGCTACAACAAAAAAGGCAGGAAACAGGAAGAGAGGATGGCAGCATGTTGGCTAAAGGTTCTTTGGAGATTGTATTGGATTCCAAAGACAAAACCCAAAAG s canFam2.chr30 19359595 165 + 43206070 AGATATGAAGAAGCCGAAGTTCGGAAAAAACTTGAAGAAAAGGACAGACAGGAGGAAGAACAGCTGCAGAAACAGAAAAGGCAAGAAGCAGGAAGAGAGGATGGTGGCACATCAACTAAAAGTTCCTTGGAAAATGTAATGGATTCCAGAGACAAAACCCAAAAG a score=2803 s hg19.chr6_ssto_hap7 2577101 37 + 4928567 AATGGTGAAAAGAATGAAAAATGTGAGACCAAAGAGA s canFam2.chr30 19362194 37 + 43206070 AATGGTGAAAAGAGTGAAAAAAATGAGACCACAGAGA a score=11730 s hg19.chr6_ssto_hap7 2577138 147 + 4928567 AAGGAGCAATCACAGCAAAGGAACTATACACAATGATGATGGATAAAAACATCAGCTTGATTATAATGGATGCTCAAAGAATGCAGGATTATCAGGATTCCTGTATTTTACATTCTCTCAGTGTTCCTGAAAAAGCCATCAGTCCAG s canFam2.chr30 19364877 147 + 43206070 AAGGGACAATCACAGCAAAGGAGCTGTATACAATGATGATGGATGAAAACATCAGCTTGATTATAATGGATGCACGAAGAATGCAGGATTATCAGGATTCTCATATTTCAAATTCTCTCTGTGTTCCTGAAGAAGCCATCAGTCCAG a score=12731 s hg19.chr6_ssto_hap7 2577285 162 + 4928567 GAGTCACTGCTAGCTGGATTGAAGCACACCTCCCAGATGATTCTATAGATACATGGAAGAAGAGGGGGAATGTGGAGTATATGGTACTTCTTGACTGGTTTAGTTCTGCAAAAGATTTACAGATTGGAACAACACTCTGGCATCTGAAAGATGCACTTTTCA s canFam2.chr30 19368800 162 + 43206070 GAGTCACTGCTAGTTGGATTGAAGCAAAACTCCCAGATGATTCTAAAGACACATGGAAGAAGAGGGGGAGTGTGGAATATGTGGTACTTCTTGACTGGTTTAGTTCTACAAAAGATTTACAACTTGGAACAACTCTACGGAGTCTGAAAGATGCACTTTTCA a score=10902 s hg19.chr6_ssto_hap7 2577447 154 + 4928567 AGTGGGAAAGTAAAACTGTCCTGTGCAATGGGCCTTGGGCCTTTGGTTTTAGAGGGAGGCTATAAAAACTGGTTCCTTTGCTATTCCCAGTATACAACAAATGCTAAGGTCACTCCACCCCCACAACACCAGAATGAAGAGTTGTCTATCTCAT s canFam2.chr30 19372550 147 + 43206070 AGTGGGAAAGTAAAACTGTCCTGCGCAATGAGCCTT-------TGGTTTTAGCAGGAGGCTATGAAAACTGGCTCCTTTGTTACCCCCAGTATACTACAAATGCTAAAGTCACTCCACCCCCACGAGGCAAGAATGAAGAGGTGTCTATCTCAT a score=15075 s hg19.chr6_ssto_hap7 2577601 240 + 4928567 TGGATTTTACTTATCCCTCATTGGAAGAATCAATTCCTTCTAAACCTGCTGCCGAGATGCCACCTCCACCTATAAAAGTGGATGAAGACATAGAATTGATAAGTGATCAAATAAGTGATAATGATCAAAATGAGAGGACAGGACCACTGAATATATCAATTCCAGTTGAATCAGTTGCTGCTTCTAAATCTGATGTTTCACCCATCATTCAGCCAGTGCCTAGCATAAAGAATGTTCCAC s canFam2.chr30 19372993 222 + 43206070 TGGATTTTACTTATCCTTCACTGGAAGAATCAGTTCCTTCTAAACCTACTGCCCAGATGCCACTTCCTTCTGTAGAAATAAATGAAAATATAGAATTGATA------------------AATGATCAAGATGAGAGAGTGGCACCACTGAACATATCAGCTCCAGTGGAACCAATTGCTGCTTCTAAATCTGATGTTTTACCTATAATTCAACCAGTGCCTGTTGTAAAGAATGTTCCAC a score=41675 s hg19.chr6_ssto_hap7 2577841 583 + 4928567 AGATTGATCATACTAAAAAACTGGCAGTCAAATTGCCTGAAGAGCATATAATCAAATCTGAAAGTACAAATCATGAGCAACAGTCTCCTCAGAATGAAAAAGTTATTCCTGATTGTTCCACCAAGCCAGTAGTTTCCTCTCCAACTCTCATGTTAACAGATGAAGAAAAGGCTCATATTCATGCAGAAACTGCTCTTCTAATGgagaaaaacaaacaagaaaaagaacttcaggaaagacagcaagggaaacagaa--agaaactgaggagggaagaacacgagcaaaaagccaaaaagaaacaagaagctgaagaaaatgaaattacacagaagcaacaaaaagcaaaagaagaaatggagaagaaagaaCGTGAACAGGCCAAGAAAGAGGATAAAGAAATCTCAGCAAAGAAGGGCAAAGAAATAACAAGAGTAAAAAGACAAAGTAAAAGTGATCATGAAACCTCTGGTGCCGAGAAGTCTGTAGAGGACAGGGGGAGAAGATGTTCAACCCCAGAAGTACAGAAAAAGTCAACAAGAGATGTGTCCCATACATCTGCGACAGGGGATTCAGGTTCAGGCA s canFam2.chr30 19386542 582 + 43206070 AGATTGATCGTACTAAAAAACCAGCAGTCAAATTGCCTGAAGATCATAAAATAAAATCTGAAAATAAAGATCACGAGCAACAGTCTCCTCAGGATGGAAAAGTAGTTCCTGATCGTTCCACAAAGCCAGTATTTCCCCCTCCGACTGCCATGTTAACAGATGAAGAAAAGGCTCGTATTCATGCAGAAACTGCTCTTCTAATGGAGAAAAACAAACAAGAAAAAGAACTTCGAGAAAGGCAGCAagaagaacagaaagagaaactgaggagagaagaacaagaacaaaaagccagaaagaaacaagaagctgaagaaaatcaaatcactgagaagcaacagaaagcaaaagaagaaatggaaaagagagaaagtgaacaggttaagaaagaagataaagaaactt---caaagaggagcagagaaaTAACAGGAGTAAAAAGACAAAGTAAAAGTGAACATGAAACTACTGATGCCAAGAAATCTGCAGAAGATAGGGGCAAAAGGTGTCCCACCCCAGAACTGCAGAAGAAAGCAGTGGGAGATGTGCCCCATGCCTCTGTGGCAGGAGATGCAAATTCAGGCA a score=6324 s hg19.chr6_ssto_hap7 2578424 89 + 4928567 AGCCTTTTAAGATTAAAGGACAACCAGAAACTGGAATTCTAAGGACAGAAACTTTTAGAGAGGATACAGATGATACTTAAAGAAATAAA s canFam2.chr30 19389466 89 + 43206070 AGCCTGTTAAGATTAAAGGACAACCAGAAAGTGGAATTCTAAAGACTGGAACTTTTAGAGAGAATACAGAAGACCTCGAAAGAAATAAA a score=5550 s hg19.chr6_ssto_hap7 2578520 71 + 4928567 GAGAACCTTCGATAATAGCACGAAGTGAAGAAATGGGGAGGATGGTACCAGGACTGCCTTCAGGCTGGGCC s canFam2.chr30 19390544 71 + 43206070 GAGAACCTTTAACAAGAGCACGAAGTGAAGAAATGGGGAGGATCGTACCAGGACTGCCTTCTGGGTGGGCC a score=20714 s hg19.chr6_ssto_hap7 2578591 254 + 4928567 AAGTTTCTTGATCCAATCACTGGAACGTTTCATTATTATCATTCACC-ACTAACACTGTTCATATGTACCCACTGGAAATGGCTCCTTCATCTGCACCTCCTTCCACCCCTCCAACTCATAAAGGCAAGCCACAGATTCCTGCTAAGCAGGATAGGGAACCTTCCAAACTGAAATGCTCTTACTCCTCCCCAGATATAACCCAGGCTATTC-----------AAGAGGAAGCCAGCAGTAACTCCAACAGTTAATCAGGAAGACAA s canFam2.chr30 19391004 266 + 43206070 AAGTTTCTTGACCCAATCACTGGAACTTTTCGTTATTATCATTCACCTACCAACACTGTTCATATGTATCCACCGGAAATGGCTCCTTCATCTGCACCTCCTTCCACCCCTCCAACTCATAAAGCCAAGCCACAGATTCCTGCTGAGCGGGATAGGGAACCGTCCAAACTGAAGCGCTCCTACTCCTCCCCAGATATAACCCAGGCTATTCAAGAGGAAGAGAAGAGGAAGCCAACAGTAACTCCAACAGTTAATCGGGAAAACAA a score=17960 s hg19.chr6_ssto_hap7 2578845 213 + 4928567 GCCAACATGCTACCCTAAAGCTGAGATCTCAAGGCTTTCTGCTTCTCAGATTTGGAAACTCAATCCTGTTTTTGGAGGTTCTGGACCAGCTCTTACTGGACTTCGTAACTTAGGAAATACTTGTTATATGAACTCAATATTGCAGTGCCTATGTAATCCTCCACATTTGGCTGATTATTTCAACCGAAACTGTTATCAGGATGATATTAACAA s canFam2.chr30 19393080 213 + 43206070 GCCAACATGCTACCCTAAAGCTGAGATCACAAGGCTTTCTGCTTCTCAGATTCGGAACCTCAATCCTGTCTTTGGAGGATCTGGACCAGCTCTCACTGGACTTCGTAATTTGGGAAATACTTGTTATATGAACTCCATACTGCAGTGCCTATGTAATGCTCCACATTTGGCTGATTATTTCAACCGAAACTGTTACCAGGATGATATTAATAG a score=16117 s hg19.chr6_ssto_hap7 2579058 209 + 4928567 GTCAAATTTGTTAGGGGCATAAAGGTGAAGTGGCAGAAGAATTTGGTATAATCATGAAAGCCCCGTGGACAGGACAGTATAGATATATCAGTCCAAAAGACCTTAAAGTCACCATTGGGAAGATCAATTACCAGTTTGCAGGATACAGT---CAAGATTCACAAGAATTTCTTCTGTTCCTAATGGATGGTCTCCATGAAGATCTAAATAAA s canFam2.chr30 19393694 211 + 43206070 GTCAAATCTCTT-GGGGCATAAAGGTGAAGTGGCTGAAGAATTTGGCATAATTATGAAAGCCCTGTGGACAGGACAATACAGGTACATCAGTCCAAAGGACTTTAAAATCACCATTGGGAAGATCAATGACCAGTTTGCAGGATATAGCCAGCAAGATTCACAAGAACTGCTTCTGTTCCTAATGGATGGTCTCCATGAAGATCTAAATAAA a score=19097 s hg19.chr6_ssto_hap7 2579267 235 + 4928567 ACTGATAATCGGAAGACATATAAAGAAGAAAATAATGATCATCTCAATGACTTTAAAGCTGCAGAACATGCCTGGCAGAAACACAAGCGGCTCTATGAGTCTATTATTGTTGCACTTTTTCAGGGTCAATTCAAATCTACAGTACAGTGCCTCACCCGTCACAAAAAGTCTAGGACACTTGAGGCCTTCATGTATTTGTCTCTACTGATAGCATCCACAAGTAAATGTACATTAT s canFam2.chr30 19395178 235 + 43206070 GCTGATAATCGGAAGAGACATAAAGAAGAAAACAATGATCACCTTGATGACTTTAAAGCTGCAGAACATGCCTGGCAGAAACACAAGCAGCTCAATGAATCTATTATTGTCGCACTTTTTCAGGGTCAGTTCAAATCCACAGTACAGTGCCTCACCTGTCACAAAAAGTCTAGGACATTTGAGGCCTTCATGTATTTGTCTCTACCCTTAGCTTCTACAAGTAAATGTACATTAC a score=10996 s hg19.chr6_ssto_hap7 2579502 139 + 4928567 AGGATTGCCTTAGATTATTTTCTAAAGAAGAAAAACTCATAGATAATAACAGATTTTACTGCAATCTTTGCAGAGCTCGACGGGATTCTTAAAAA-----AGAAATCTGGAAGTTACCACCTGTGCTTTTAGTGCATCTGAAAC s canFam2.chr30 19396033 144 + 43206070 AGGATTGCCTTAGATTATTTTCCAAAGAAGAGAAGCTCACAGATAACAACAGGTTTTACTGCAGTCATTGCAGAACTCGACGGGATTCTTTAAAAAAGATAGAAATCTGGAAGTTGCCACCTGTGCTTTTAGTGCATCTGAAAC a score=11561 s hg19.chr6_ssto_hap7 2579642 134 + 4928567 TTTTTCCTACAATGGCAGGTGGAAACAAAAATTACAGACATCTGTGGACTTCCCGTTAGAAAATCTTGCCTTGTCACAGTATGTTATTGGTCCAAAGAACAATTTGAAGAAATATAATTTGTTTTCTGTTTCAG s canFam2.chr30 19398475 134 + 43206070 TTTTTCCTATGATGGCAGGTGGAAACAGAAATTACAGACCTCTGTGGACTTCCCATTAGAAAATCTTGACTTGTCACAGTATGTTATTGGCCCAAAGAACAATTTGAAGAAATATAATTTGTTTTCTGTTTCAG a score=60031 s hg19.chr6_ssto_hap7 2579776 855 + 4928567 ATCACTGCGGTGGGCTGGATGGAGGCCATTACACAGCCTACTGTAAAAATGCAGCAAAACAGCGGTGGTTTAAGTTTGATGATCATGAAGTTTCTGATATCTCTGTTTCTTCTGTGAAATCTTCAGCAGCTTATATCCTCTTTTATACTTCTTTGGGACCATGAGTAACTGATGTAGGCACATAAGGAGACATAGGTTATAAACTAGTTATCTTTTAAAAGGCTCAGCAACACAATTCTTGAAATGCTTATCAAGATAATGGTAGCAATAGCTGGCCATTTAGAGGAATTCTAGGACAGTGGGAGCTGTGTTACTAGCACTATATAATTCCTGTCAGTG--------------GTGACAAATAACACTTAACAAGTATTGCAGTAAGCATCACTTACAGGTACCATTTATTTCAAAACAACTTTTTTAGTCTGCTCCAAAGTTAAAATAATTAACTAGCTAAGCATTATTATTCTACTGGTCTAAAAACCTTTGTACCCTTTTTTTCC-TTTTCACTGTTACAGCCTTTTCACATTTCTAAATCCCATCTTCATATACTATGAATACTCTAGAATGATGTGAAGCAGATAGGAATGTATGTGTACATATTTATTGCATACTTACACATCAAATCGATATACATAGTTTAACATGTGGTCCTTTCGTGAAACTTAGAACTCAGAGGATTGCATTTTTTTCTTTGAGCATATTTTGAGTAACTGCAGTGCTTTCTTAGGGAAATGACAGGGCAAAGCTATTTTTCTGTTGGCTTTGGG-GGCATTTGGGTGCGCTAAATCTTTA-TCTTAAAAAATAAATGGAAACTTCCTTTAATTTTTTAAAATGAG---------------ACATTAAAATCTTAATGAGAAAAAT s canFam2.chr30 19398762 872 + 43206070 ATCACTACGGTGGGCTGGATGGAGGCCACTACACTGCCTATTGTAAAAATGCGGCAAGACAGCGGTGGTTTAAATTTGATGATCATGAAGTTTCTGATATCTCTGTTTCTTCTGTGAAGTCTTCGGCAGCTTATATCCTCTTTTATACTTCACTGGGACCACGAGCAGCTGATGTAGCCACATAAGGAGAAGTAGGTTATAAGCTAGTTATCTTTTAAGACGCTGAGCGAAACAA--CTCGACATACTTATACTG-----GATAGCTATAGCTGGCCCTTTAGAGGAATTCTAGGACAGTGGGAGCTATGTTATTATCACCATATATTTTAGGTCAGTGCTATTATCAAAAAACTGACTAATAATATTTAACAACTATTGCAGTAAGCACTCCTTACAGGTACCATTTATTTCAA---AACCTTTATAGTTTGCTCCAAAGTTAAAGTAATTAACTAGCTAAGCATTATTATTCTACCGGTCTAAAAACCATTCTATCCTTTTTTTCCTTTTTCACTGTTATGGCCTTTTCACATTTCTAAATCCCAGCTTGAT---CTATGAATACTCTAGAATGATGTAAAGCAGATAGGAATGTATGTGTATATATTTATTGCACACTTGCACATCAAATCAATGTACATAGTATAATATGTGGTCCTTTTGTGAAGCCTAGAACTCAGAGGATTGTTTGTTTTTCTTTTGGCCTATTCTGAGTAACTGCAGTGCTTTCTTAGGGAAATGACAGGGCAAAGCTATTTTTTTGTTGGCTTTGGGCTGTATTT--GTGCACTAAATCTTTATTCTAAAAAAATAAATGGAAACTTTCTTTAATTTTTTAAAATGAATTTTCATTTACACCTACATTAAAATCTTAATGAGAAAAAT a score=98764 s hg19.chr6_ssto_hap7 2581498 1290 + 4928567 TCTACCGGCAGGATTTGATGGCGTGATGTCTCACAGAAAGTTCTCCACTCCCAGACATGGGTCCCTCGGCTTCCTGCCTTGGAAGCACAGCAGCAGGCATCATGGGAAGGTGAAGAGCTTCCCTAAGGATGACCCATCCAAGCCGGTCCACCTCACAGCCTTCCTGGGATACAAGGCTGGCATGACCCACATCGTGCGGGAAGTCGACAGGCCAGGATCCAAGGTGAACAAGAAGGAGGTGGTGGAGGCTGTGACCATTGTGGAGAGGCCACCA---------GTGGGCATTGTGGGCTGCGTGGAAACCCCTCAAGGCTTCCGGACTTGCAAGACTGTCTTCGCTGAGCACATCAGTGATGAATGCAAGAGGCGTTTCTATAAGAACTGGCATAAATCTAAGAAGAAGGCCTTTACCAAGTACTGCAAGAAATGGCAGGATGAGGATGGCAAGAAGCAGCTGGAGAAGGACTTCAGCAGCATGAAGAAGTACTGCCAAGTCATCTGCGTCATTGCCCACACCCAGATGCACCTGCTTCCTCTGTGCCAGAAGAAGGCCCACCTGATGGAGATCCAGGTGAATGGAGGCACTGTGGCTGAGAAGCTGGACTGGGCTGGCGAGAGGCTCAAGCACCAGGTACCTGTGAACCAAGTGTTTGGGCAGGATGAGATGATCGACGTCATCAGGGTGACCAAGGGCAAAGGCTACAAAAGGGTCACCAGTCATTGGCACACCAAGAAGCTGCCCCGCAAGACCCACCAAGGCCTGTGCAAGGTGGCCTGTATTGGGGCATGGCATCCTGCTCGTGTGGGCTTCTCTGTGGTACGTGGTGGGCAGAAAGGCTACCATCACCGCACTGAGATCAAC---AAGATCTATAGGATTGGCTAGGGCTACCTTATCAAGGATGGCAAGCTGATCAAGAACAATGCCTCCACTGACTATGACCTGTCTGACAAGAGCATCAACCCTTTGGGTGGCTTCGTCCACTATGGTGAAGTGACCAATGACTTTGTCATGCTGAAAGGCTGTGTGGTGGGAACCAAGAAGTGGGTGCTCACCCTCCACAAGTCCTTGCTGGTGCAGACAAAGCAGCGGGCTCTGGAGAAGATTGACCTTAAGTTCATTGACACCTCCTCCAAGTTTGGCCATGGCCGCTTCCAGACCACGGAGGAGAAGAAAGCATTCATGGGACCACTCAAGAAAGACCGAATTGCAAAGGAAGAAGGAGCTTAATGCTGGGAACAGATATTGCAACTGGTGGGATCTCAATAAAAGTTATTTTCCATTAAAAAAAAAAg s canFam2.chr12 13443235 1302 - 75515492 TCTACCGGCTGTACTTGGCGGCACGATGTCCCACAGGAAGTTCTCCGCTCCCAGGCACGGGTCCCTGGGCTTCTTGCCTCGGAAACGCAGCAGCCGCCACCGTGGGAAGGTGAAGAGCTTCCCCAAGGATGACTCTTCCAAGCCTGTCCACCTCACAGCCTTCCTGGGCTACAAGGCCGGCATGACTCACATCGTGCGGGAGGTGGACCGGCCAGGATCCAAGGTGAACAAGAAGGAAGTGGTGGAGGCTGTGACCATTGTGGAGACCCCACCCATGGTGGTTGTGGGCATCGTGGGCTATGTGGAAACCCCTCGAGGCCTCCGTACCTTTAAGACCATCTTTGCTGAGCACATCAGTGACGAATGCAAAAGGCGCTTCTATAAGAACTGGCATAAGTCTAAGAAGAAGGCCTTCACCAAATATTGCAAGAAGTGGCAGGATGACGATGGCAAGAAGCAGCTAGAGAAGGACTTCAACAGCATGAAGAAGTATTGCCAGGTGATCCGTGTCATCGCCCACACCCAGATGCGCCTGCTTCCTCTGCGCCAGAAGAAGGCCCACCTCATGGAGATCCAGGTGAACGGAGGCACAGTGGCTGAGAAGCTCGACTGGGCCCGTGAGAGGCTGGAGCAGCAGGTGCCTGTGAACCAGGTGTTTGGGCAAGATGAGATGATTGATGTCATCGGTGTCACCAAGGGCAAAGGCTACAAAGGGGTCACCAGCCGCTGGCACACCAAGAAGCTACCCCGCAAAACCCACCGGGGCCTGCGCAAGGTTGCCTGTATTGGAGCCTGGCATCCTGCCCGAGTGGCCTTCTCTATGGCTCGGGCTGGGCAGAAAGGCTACCATCACCGCACTGAGATCAACAAGAAGATATACAAGATTGGCCAGGGCTATCTCATCAAGGATGGCAAGCTGATCAAGAACAACGCTTCCACTGATTATGATCTGTCTGACAAGAGCATCAACCCCCTGGGTGGCTTTGTCCACTACGGTGAAGTGACCAATGACTTTGTGATGCTGAAAGGCTGTGTGGTGGGCACCAAGAAGCGAGTGCTGACTCTGCGCAAGTCCTTGCTGGTGCAGACCAAACGGCGTGCCCTAGAGAAGATTGACCTGAAATTCATTGACACCACCTCCAAGTTTGGCCATGGCCGATTCCAGACTGTGGAGGAGAAGAAAGCATTCATGGGACCACTTAAGAAAGATCGAATTGCAAAGGAAGAAGGAGCTTAATGTCAGGACCAGATTGTGCAGCTGGTGGGATCTCAATAAAAATTATTTTCCAGTGAAAAATAAAT a score=40160 s hg19.chr6_ssto_hap7 2586993 1043 + 4928567 aaagATGCCAGCAAAGTAGGCCTCTACATTAAAAAAAAAAGAGAGAGAAAAATTAA--------ACAGAGAAATTTAAAAGTTTATAAATAATGTTTACTTGTATTCAAGAAAATTATAGCGACAGCCGCCAGATAATGATCAGCTCTAA-AAAGAGAAGCTCAAGAAGCTCATGCCACAGCAGCTGGTACAGCTGAGGAGATCAGATAAACCAGCACAAGCATGGTCATGAAAGGGAGCTGCAGACATATGG-TTTCCAGAGTTTCAAAATCCATATGACTAAAATCTATGTGATGCGTATTATATGATGACTGCCT-CAAGACAGACAGGTGTCCACTTAGAG-ACACAGAGCTGTGACTTGCAGGGGCTGGTTGATTTTCTCAGAA---CTCATTAACCTAAATCCATTAGTTACCATCCTGTTTCCACTCCTATCATCACCTCAGACAACCCTGCGTTTAGCTCAAGATTCTTCCCTTCATCGTAACTGAAAGTCACTAATGACTTCAATCAATTTGAAATACTATAAGTAGGTAAGATTTCCTCAGTAAGTAAATGGTCTTAGCATATTTTTGAAGTCATAACTATAATCAAAGCCTGGGA-CATTTATTTGTTCTAAACAAGCAGTTATTCTTCATCCAGAATTACACAATAGAAGCTCTCTTTCTTGCATTTCCCAACAGTTTGCCTTAGCCAGGAAAATAAACCCCATGGGTCTCTAGCATGACCACGGTGCAAGAATAAGGGGAAGGGCAGAGGTGAGAACTAAGTGCTCTTCTACAGCTACGGGTCTATCAAGGTAATCTTGAGAGGTACTTATCAACATGTGATGTGCCAGCAACAACATGAGGGAAGATAACCACGTGTTTCTAGGA-TAAGGCAAAGGCCCTGCTCATG-GATTCATCCGTAATCTGAACACAGCAC-ATGAAGAGTGAACAGCTGTCAATATCTACTTTCACCTCAA-TGTAAACTTTCAAAATTAAGACCAAGTGGAGCACGGTGCCCTCTGAAGCACTGTCTGTCACACACTAAGGAGCTAAGA--ACTCCTGTGGCCT s canFam2.chr25 15792663 1026 + 54563659 AATAATGCCAACACAGTAGGCCTTTATGCTGaaaaaaaaaaaaaaaaaaaaaaGGAGAGAAATCAGAGAGAAATTTAAAAGTTCATTAGTAATTACTGCTTATATTCAACAAAATTATGGTGAC-----------------TAGCTCTAAGAAACAGAAACTCGAGAAGCATGTGCCGAAACAGCTGAAAAGACTCAGATAACCTGATATA-----AGAAGCATGGTCTTGGGAAGGGGATGCAGATATTAGGCTTTTCAGAGTTTCAAAATCTAGGTAATTAAAACCTTATATATGGGCTTTATATGATGACTGCCCACAAGCCCAATAAATGTCCACTTGGGGGACACACGGACATGGTTTAGGGGCGCCG-CTGAAGTCCTCAGGAGGACTCATTAACAAAAATCCATTGGTCATGGTCCTGTTTCGGCAACTACCATGAAC-CAGACAACTCTATCTTGAGCTAAAGACTC----CTTCATCGTGAC--AGAGTCACCAATAACTGCCATCTGTCTGAAATGCTGCACAT-GGTAAGAATCCCT-AGTAAGTAAAGTGTCTTAGTATACCTGTGAAGTCCTATCTATAATCGAAGCCTGGGGGCATTTATTTGTTCTAAACAAGCAGTTACCCTTCATCCAAAATCATAAGAGAAAAGCTGCCATCCGTGAGTTTTCCAGTGGTCTGCTGTCACCAGGAAGATCAACCCTGTGGGGCTCTC-CAGTTCCTTGGAGGTGGAACAGCAGCAAGAGCTAAGGTGAAAGGAAAGTGATCTGGTACAGCTACATGTCTA---ATCTAATCT---GAGGTACTTCTTAAAATTTAATGTGCCAACGACAACATGAGAAAAGAGAACCGTGTGCTTCTAGGAGTAGGGCCAAGGCCCTACTTGGGTGATGGATCCCTAATCTGGCCACAGCACCAGGAGAAGCGAATAGCTGTCAGCATCTACTTTCACCTAAAATCTATGCTTTTAAAATTCAGATCACGTGGATCAAGGTGCCGTGGGAGGCGCTCTCAGGAGCAGGCCAAGGAGCCAGGACCACTCCAAGGGCCT a score=39193 s hg19.chr6_ssto_hap7 2588126 1019 + 4928567 AGCTCCTGGACCACTCACCTC------------------------------------TGCTCCTGCTGGCTGGTGCCCAAG-CTGTAAGGGCTGGCAAATATTTTGAGTATTGGTCCCAAAGGACCCTGAAGGTGAAAGGA-------TCTTGTTCTTCATTTTCATTACTTCTAAGC-ACTGAGACCTCTTACAAGAATCATCCACAAGCATTTACTAAGTGAATGTTCACAGGAAACCCTTCCTGAAAAGGGTCCTTCCAACTTTACATTTGACAAGTGTGTACTAAGGCAATAAAACTATTCAACTGAGCATTCAAATTCACACAGAGGATACCACGCCAAGAAAATGAAAGCAGAAATATTGGATTCTCCTTATTTGTTAAACCTTTCCCTCTAGAACCAACAGCTTTTCAAACTCAT------AAAACACCCCAAAACAGTAAAACAATATCAATTACTCATCTGAAGATATCCACCTGAAACACAGTTATTAATCTT--CAAAGGCCTAGCACCAGGCAGCTTCACACA------GCACATCTGCAGAATTGTAATGATCAATAAGAGTAAACCCAAAGTACACTAAATACTTTCATGGCCTACAGGAAAAAA--AAAACGCTCTTTTCAGGACGATGTAATAGTTACATCCTATTTCTTCATGTGCAGCATGATATT-CTATGCTTAATGGCATTTAAATGTTACACAGTAAATAC-GAGAAAACCCAGAATTTTTGGATGTGCAGAAGCAATATCACATCATTAATACAAAAGGTGCTCAGCTGCGGGATTATAATACCAT----TGAGTGCTGAGACCACTTGAAATCTTAAGTACATTCTTAGCATATGGTCTCCTGGCTGTCACCCAGCCTGGTACCAGCTACCCACCTGTTGCATAGAGCTAGCCCCAGCA--CTGCCTTGGTTGGGCCGGTTGTTTTTGTCAAACTCTAAGTCTCCCTCAGAATCCCTGTACTTCTCCACTGCAATGTATT--GACAGGGTTGTGACCTTGTCCTTCCCAAGGGGCTCACTCTTGGCCTCTTGCTCACACAGATCCTGCACCTTTTCCCGTCAAATC s canFam2.chr25 15793865 1035 + 54563659 AACCCCCGACACACTCCCCCCGCCCTCCCCCCCACCCTGGGCCTGCCATGTCTGCATTGGCCTGGCCGGCTGGCACCCAAAACTCCAAGGGTAGCCAGGTATTTGCAGTGTGGGCCCTGATGGCCCCTGGAGGAAAGGGAACATCTCTTCCTGTTCTTCACTGTCATCACTGCGGAGCTACTGGACTGTCTCGGAGGAATCATCAACCAGCATGGACCAAGTGCACGC-CACAGGGAACCCG-CCTGTAACGGGCCCCTCCGATTCCACATTTTACAAGAGTGCA--GAGGAAGCGAGATCGCC-----------TCCAACTCACACAGGGGCCGCCAAGCCAGGGTG--GAAAGCAGAAACGTTTGACTCTCTGTATGTGTTCCATCTTTCCCTCCAGAACCAACTTCTTGTGCAACACATTTGGAACAAACAAACAAAATGGGTGAAACGCTATCACTGACTGATCGGAAGACATCACTCTGACACACGGTCATTAATCTTGCAGAAGAGCTAACACCAGGCAGCTGCACACACACACAGCAAGTCTGGGGAACAGTAGCGATCAAGAAGGGGAAACCCAAATGGCACGAAGTACTTTCAGGGCCGAGAAAAAGGAAGCAAGATGCT-GTGTCAGGACAATGCAATAGTTACAGCATATCTCCTCAGGTGCAGCACGATTTTGCTATGTTTAGTGGCACTTAAGTATTACACAGTAAATACTGAAAAAACCCAGAATTTTTGGATGTGCAAAAGCAATATCACATTATTAATACAAAAGTTGCTAAGCTACAGGATTATAATACCACTATGTGGGTGCTGAGACCACTGAAAATTTTCAACACGTTTCTGACACATGGTCTCCCGG-TGGCACCCGGCCTCGT---------------------------------CAGCATGCCGCCTCAGTCGGACCAGTCGTTCTCGTCAAACTCTGAGTCATCGTCAGAATCGCTGTA---CTCGACGGCGATGCGTCTGGATAGAATTGTGGCCACATCATTCCCAACTGGCTCACGCTTGGCCTCTTGCTCACGCTGTTCTTGTACCTTTTTCAGCTGAATC a score=14296 s hg19.chr6_ssto_hap7 2589145 360 + 4928567 CTCATTCCAGTAGCAGCAAGGAGATCACTTCTCGTATCACTTTTTGGTGGCTGTGCAGGTTCTTGACGCTTTGCCTCAGCTACTGGTGGTAGTGTGGGGGCGAATGCA-CGGGGAAGACAAAAAAGAAGAA-CTGAGCCAAGA-GGCCTGGTGGGGAAAGT-GTGTGGCTGGAGGAGGGAATGCTG-GACCCAGGGGCCAGTGGAGGGAGGGTGAGGAGGAG-GGTGTGTG--GAGCCAGCTGATATGAGGAA-GGAGGCGGCAGGAGGATTTGCAGAAGGC-AACAAAGGCAGTTTGTACTGTAAAA------------GGGGGAAGAGAAGGAGGTCTTGACGGGTTGTAATATGCAAGCACCTGTGCTGGGAGCATCCT s canFam2.chr25 15797148 371 + 54563659 CCCATTCGAATGGCAGCGAGAAGATCGCTTCGGGCATCACTTATGGGTGGCTGTGCCGTCTCCTGGCGCTTTGCCTCGGCTGCAGG---------GGGGGC--ATGCATTGGAGAGGAGGAGCGAGAAGAGCCTGCACCAGGAGGGCCTGGTGGAGGAGGCGGTGGGCCTGGTGGTGGCGGGGCTGTGACCACGAGCCCAGTGGTGGGAGGGTGAGGAGGAGCCGTGTAGGACGAGCCCGCCGAGGCAGGGAAGGGGGGCTGCATGGGGATCTGTAGGGGGCTGACGAAAGCAGTTTGTGCTGAAGGAATCATGGGGGGTGGTGGAGGAGGAGGAGGTCCTGAGGGGTTGTAATATTCAATTATCTGTGCTGGCAGCATCCT a score=10174 s hg19.chr6_ssto_hap7 2589505 250 + 4928567 GTAGTCTCCTGGAGCCATAAGTGCACAGGATTGGAACACAGCTGGGG--TAAGGCAGGGA-AGTGGGGGCCGCTCTTGAGGTCCATTTAGGGCCATGTGCCTCACTGAGGCAGAGGAGGGGTGGCACTCAAGCTCAGGGGCCTGGTTTGTGGGCCCATGTGGAGATGCATCTTCAGCTGCCTAGGAA-GGGTCGT--------------GAGAATGGTTTGGAGTAGCTCCATAAGAGC-ATCCCTAACATCCATTGTATGGGACCTGC s canFam2.chr25 15799319 269 + 54563659 GTAGTCTGCTGGCGCCATGGGTGCGGAGGCCTGGGACCCCTCTGCGGCCTGTGGTGGGGGTGGCGGCGGTGGCTGCTGGGGTCTGTTTAGGGCCATGTGCCTCGCCGAGGCCGAGGGGGGTCGGTACTCATGCTCTGGGGCCTGGGTTGCCGGCCCATGCGGTGGCGCGTCCCCGGCTGTGTAAGAAGGGGTCACGGGCTGCGGGTGCAGAGAGTGGTTGGGAGTTGCCGGGTAAGAATAATCTGTGACATCCGATGCATGCGACCTGA a score=10595 s hg19.chr6_ssto_hap7 2589755 169 + 4928567 TGTCTAGGGACAGGGGTTCTT-GCAGGATGCTCCATGGTACACACT--GAGACAACCTGTTGCTGGGTCTAAGCTCTTTGTCATATGCCATCATATTCCACTCATGGTGCTTGTTTCTGGCTTTTGTAATCCTTTTCACATCATAAGTGGTGCCATCTATGTGGTTTTGCTA s canFam2.chr25 15803597 172 + 54563659 TGTCTGGGGACAGGGATCCCTCGGAAGATGCTCCGTGGTACACACTCTGAGACAGTCTGTTGTCGGGTCTAAGCTCTTTGTCATATGCCATCATACTCCATTCCTGGCGCCTGTTTCTGGCCTTCCTAACCTTTTTCACCTCCCGGGTTGTGCCATCTATACGCTTTTGCTC a score=7940 s hg19.chr6_ssto_hap7 2589924 112 + 4928567 CTTTTGATGCCTTCTGTCTTTCCTTTTGTCTTCTGTGTCCTGCAGCACTT---CTTTCCAGAGGTCAAATAAATGGGAAGGATCAGTATAGAACTTCAGCCTGTC---TTTATCATCT s canFam2.chr25 15808129 118 + 54563659 CTTTTGACGCCTCTTCTCCTTCCTCTTGTCTTCTGTGTCCTGCAGCATTTTTTCTTTCCAGAGGTCAAAGAAATAGGAAGGATCAGTGTAGAACTTCAGCCCATCCTTTTTATCATCT a score=10389 s hg19.chr6_ssto_hap7 2590036 154 + 4928567 CCATGTGCTCTCATGCTATTCAGGGGAGGTGGTCAATCACTCTGATTGTAAATGTCAGCAGCAGGAGTAGGAATGCTGCTCTTTGAAACTGCTTGCTGGTCTTGGGCTGGGGAACTTTTGAGGGCTTTTTCCATGTTGATGTCCTGTGGTGACA s canFam2.chr25 15811446 154 + 54563659 CTGTATGGTGTAAGAATATTCAGAGGAGGTGGCTTATCACTCTGGTTGTAAATGTCAGCAACAGGATTAGGAATGCTGTTCTTTGAAACCACCTGCTGGTCTTGAACTGTGGAACTTTTGAAAGCTTTTTTCATGTTGATATCCTGTAGTGACA a score=8697 s hg19.chr6_ssto_hap7 2590190 134 + 4928567 CCTCTTCCACTGCTGAATCCAGCTGAGTGACTTTGACCATGAGGCAACAAATTCT------AAGAGAATTTGATCTAATGTGGAAGCAGTTAGCCTCCTTAAATAGCTCACCAAATGTGTCTTCAGCATGTATGTTCAGA s canFam2.chr25 15813729 140 + 54563659 CCTCTTCCACTGTTGAATCCAGCTGGGTAACTTTGACAGCAAGGCGATCAATTCTGTCTTGAAGAGAATTTGCTCTGATGTAGAAGTTGTTAGCCTCATTAAACAGCTCACCAAATATGTCTTCAGCATGTTTGCCTAAA a score=8635 s hg19.chr6_ssto_hap7 2590324 137 + 4928567 TTGCTTAGCTGGTGCGTAATAGTGACAAGATTGTTGTTGGTTACACTTTCAAGT-CACTGGTAATCCCTTCAGGCAGAGTTCCCTGGTGCAAATGCTGGGATTAGATGCTCCTCTTCACGGGAGGCATGGCTTATAAT s canFam2.chr25 15834180 138 + 54563659 CTGCTTAGCTGGCGTATGATAGCAGCAAGAGTACTATTGGTTACACATTCAAGTTCACTGGTAATCCCTTCAGGCAGGGCTCCCCGGCACAAGTGCCGGGGTTCGATGTTCCTCTTCACTAAAGGCATGGCTCACGAT a score=12031 s hg19.chr6_ssto_hap7 2591081 713 + 4928567 ttctgagtgtgtgtcctgcatctgtgtaatttagaggttgaccaagtatttgggtca-tttatactcagattttgtgattcaacttcattgtggttgctttgtttctggaattctctttgaatttccaattgttttgttagcctcaaatcctgccttttcacctctcaagccagtaagatttttgctttcttctact-gaGCTCTGTGCAGGTTGGCAAATGTACTCAGTCCATGTTACTGAAGACTTGCAGATCTCACCAGGATCATTTATCTCTTTGGAGGGTAGACCTCCCTCTAGTTTCTTTCTGGTTTTTCACCAGATTCCCAAGTGGC--CCACACCCATGCAGAGTTTAGTGTTCAACTAGGGATGAGCATAATTTGCATTCACATTGTTGATCTCAACTCTTCTGCAGCTCTCTTTC-------AACATTCTCATTTACATTTCTAGCTGATTTGG-GCTCTGAACTCTATAAACTGCCCATATTGAGCCACTAGGGCTGCAGTTATCT----------------GCTGGGAGGCTGAAGAGCACTCATAGGTAAGAAGGAAAGGCCACCAACTTGCAGTCCTTACCTAAGACA---GGAGTCTTAAACAAGAAAGCTCTTATCACATAT-tgcttgcctttgttaattttccagtgacttcaaatg-----tttgtttttagtatttagtacagttttcatgttgctgt-tggaggAAAACTTGCTGGTCTATCTCTTCATG s canFam2.chr1 93516859 721 + 125616256 ttttaaatatctcccctgtgcctttgtattttgacagt----ccaggatttgaataaatttaaactaagattgggatctcca---tgattctttttgctttgt------ggttccccataaatttccagttacttcttcagctccaagttcttttttctaacatctcaagccaatagg-CTTTCACTTTTTACAACTTGAATTGTATGTAG-TTAGGAGATGCATTTGATCAAAGACATAGGAAATTTGCAAATCTCATCAGGAGCAATAGTAATTTTCAAGTGGAGACCATCCTCTAGTTTCTGCCTGCTtctttgttgagccccctggggtcttctatgtaaatgtatagtttagcaatgaggcaggattttgggcagtttattctcagattttggatgtcagcatttct--aattctctctcacttccaaaaattgcctcttaactttccagctgctttgatgatgtgaattctgttgtctg-ccaccttgagctgacaaagctgcaaattttttttttttttcaccagaactgagagtttggtga-tatctttgggcaa-----caaagctacataatcactgctcttactcagagcactgacaatctatcatgaatttactcctctccagtctctgcctgccattgttcattttccagtgacttctaataaaagctttatttataat-tctatcaagttttaaaaattgttgtatacaggagA-----TAGGTCAACTTCTTCATG a score=6146 s hg19.chr6_ssto_hap7 2609305 266 + 4928567 GGAGGACCCCAGTACCTGCCGGTAGCATCATCTCCTTGCCATGCTCCAGGTGTCTGAGCAGCCACCTAGTGCAGTGACCCATCGGGGCTTCCCTTGTGGCCTCCGCGGTCCAGAACCTCTCCCAGGTGTGATGGATCCTCCAAGCCGCTCTTTGAGCCGCTGTCCAGGTCTGCAGGTCCTCGTTCAGGGACATGAAATCTC-CTTGTCGTAGGCGGACTTAAAGTGTCCTTCGAGGAAGCTCCTGTCCGGAGCCACCACCCAGCCAG s canFam2.chr18 14694557 267 - 58872314 GGAGGCCCCTGGTACCTGCGCGCTGCAGCGTCTCCCTCCCATTCTCCAGGTGTCTGCGGAGCCACTCCAAGCACCTGCCCTCCAGGAAGTTCTTACGGTTCTCAGCTACAGTGGCCGCATCCCACTTGCGCCGAGTGATCTGAGCCACCGGGTCCTCCACGATCCAGGAGCGCAGGTCCTCGCTCAGGGTGATGTAATCCAGGCCGTCATAGGCGTGACGCTGGTACCCGCGCAGGAAGCGCCCATCAGGTCCCACGTCGCAGCCTG a score=3804 s hg19.chr6_ssto_hap7 2609887 255 + 4928567 GTGCGGGCCCAGGAACCTCAGGCCCCTCAGTAACACATTCCCTGCGGTCTTCGAGAATTTTCCTCAGGGCGCCCACAGCCCTGTGCCATCTTCTCCACCCGCGCTTCACGCT-CTGATTCTCGCCGCGGCTGTGGAAGCTCAGGAATCGCGTGTCGCCCACGAAGGCG-CCGCTGAGGAACTCAGGGC-CCACGTGGTGAAGGCGGAGCCCGGCGGCCTTCAAGTACCC---GGGGTGCGGGCCT--GGGCTCCGGGAACCTA s canFam2.chr18 14695116 231 - 58872314 GTGCAGGTCCTGGAG-TTCAG-------------------CGTGCGCTCTTCCCAG----TACTCAGGCCCC------TCCTGCTCCAGCCACCGCACCAGCGGCTCAGGCCGCCGACCCTCGCGTTCGCTGTTGAACCGTTCGAACGGCGTGTCGTCCACGTAGGCGACTGCCCAGTGG--CGGGGCTCCCCGTGGCCAGGCCGGGATACGACCGTGTTCAAGAACCTCAGGGAGTGCGAGCCTGCGGGCGCCAAGAGGCTG a score=3935 s hg19.chr6_ssto_hap7 2643810 88 + 4928567 TGCTTGTAAATTTTTAGAAACAGTTGTTTGCTCCTTGTTTTATTAGATCACAGGCTAATTTCCTCAGAGTATTCTTATATTGAAGAAT s canFam2.chr21 44655706 88 - 54024781 tgattgtaaattcccCCAAAGAGTTGTTTGCTCCTTTTACTGCTATCCCAAATGCAAATTTCCTTAGAAAACTCTTGTATTAGAGGAT a score=27093 s hg19.chr6_ssto_hap7 2647231 922 + 4928567 gctcaaaatgtccaacaatggtcagagagat--atcctcctcagaggaagagttccatagagaattaaaatagtcaattg--------ggtgtgtaaaggcaagagtggggaaacaa--gcacgaagggtgggcttatacaccttcatgagtgtgc--tcacacttg------acatgag----------AGTATCCTCTCt-----------------tttcctggtggatcaggggaaggtgctggtatga---------tctacatatattcctccccaaggtgggaggacactggaatgatgactgtaattcacctcaacttgcttttctc-----atacctgatgcagtggtcccaggact-agggatgcaaatagagttcagaaacaggaattattcctgagcaagaaactgtaaatatattttatgtccattatgtaataattcctaagggcctgtagaggtaggttgtgccttcactgcatctggcaaagttggggctaacactgaatgcagctgtattgcctggggtcagatagcaaaccagttctctacctgca------taaccctaccctctatgaactggaatggaccaacgag-agacacttgctagaacagtattggtccctgcagtctcagccagcacagcagcagaacttaatgttccttccaaaattataaatgtttagtataaatgaagggaaggagaaatagtagctgagggtaaatgaatgaataaatgggtta-----tgtaatgaggaaaatccaatgttacatgaactacttgaaaaaggtataa-gcaagagatgatattgtctcttagctcaattttaccagatgcctgaaagggtgcagccatatgttgctgaaactattcctgtttatgga-------------------------------------------------------TTGCACTGGGATC-----ATTGTTAATGACCAAAGAGGATTCTGGTAATGTGCCAGGATCTTTTCACTGTTATGATTCTTCTGGTGTAGGAGATCTGTGATTg s canFam2.chr9 19275360 1005 + 64418924 gctggtaatgtccaacagagcaaagagagagcgatctcccttagactactagtttgatagagaattggaatggacaattaaaacatcagttgtctaaaa-------tggggagataaaagctggaagggccgacttacacaacttcatgagtgtgtgttcgcattcagcacaaacatgagggctggctaaaggattgtccctactggatagatcttggttttcctcgtagatctgggaaagg--ctggtggggaggaaggtgtcgatattctttcctcctcatg------------------------------tcatttcaaattttgtttctttccgactacttgacgcagtggtcacaggaccgagggctgtaacttcaaagtcagaacaaggatgattcct-agcaagaaactg-gaacatgttttgaa-cctttatgccataattccttaggtcctgatggggcaagatatatcttcacc-catctgccaaa-ttgggatcaacagtgaattcagctatattacctgatggta------aaagtagctctctagttgcagctaggtagcattactccatgtgaacgggagtggatggaggaggaggaacttgctagtgtggcattgctgcctgccatctagattagcacagtgactgaacctaatgtcccttccaaaggtagaaaagtttggtataaatggagaaaaggaaatatcatggctgagggaaagggaataaagagatgggctacgtaatgtaatgagggaaagccagtgttacaataacacctcaagagaggttcagtgtaaaagatgatattgtctcttagctcagttatgccagat-cttcaaaaggtgaagcccc-tcttactgaaactacttctgtttctggaacctgatacaatctatggaagcctccaaatctgagtggccttaccTCTCATGTCCTAGGACTTGGATATAATAGTTATTAATGACTGAATGGGATTTTAATAATGTGCCACTGTCTTTTGACTTTTATGATTGTTTTGCCATAAGAGATCCGCATTCA a score=7202 s hg19.chr6_ssto_hap7 2648478 475 + 4928567 ACCAGGGtgtgat-ctgtggtccagtaaaa-------atatttggtcttttccctgtttcctgacaaccaggttctaaaacatttgcaatctcctcagtgataaacatgac----------ttcaacatggcaatgagatgactatggggtgaggggctcctagatagcttcaggatggggactagttgcc-agaaacacgaagctgtgattagaggattggaactgttagccccatccctaaagtctgggaaggaaagagaggctcgaggttgagttcagtcacacaatggccagtgatttaattaatcatgcttacacaatgaaatatccatagaaacctctggagattgggtttcggagagcacatctgtgtgtccacatgctgggaggatggtgagccccatctccgtggggacagaggctcttgtgctcagagcccttccagg--cctcaccctgtgcacctctt-catctggctgctc--atttgtatccttt s canFam2.chr9 19276576 438 + 64418924 ACCAATGGGTGATACTGTGATTTATAATAAGGAATGTATATTAGATCTTTATCCCATTT-CTAGCACAGAGCTCTTAAAACCTTTGGAGTTCCCTAGGTATTACAAGCCACAGAAGTATCTTTTGTTATGTTAACAATGTGACCTT-------TGGACTGC------ACTGAAGGCTGGGTGCTGGTTGCCTAGAGACTCAACTCTATGATTAGAAGGTTGAAACTTT---CCC-----------TCTGGGACATCgggagaggctgtaggtt-aactcaatctc-caatggccaatgatttaatccattgtgcctttgtagtgaagcctcca-aaaaccctgaaaggactggg-ttcagagagcttccaggttggtgaacatgcaga---------------------catggggagagag----cagtgc----agccctccccagaaccttgcctcatgcatcccttccatctggctgtccagacttacacccttt a score=5844 s hg19.chr6_ssto_hap7 2650260 221 + 4928567 AGCAACttcctgagttctttgagttagtttaagaattctcaatccttgggaggtgagaaacccctgattttgcagccatgttagacagaagtgcaggtaacctggg-acccgatacttgtgacttgcttctgaagtgaggacagacttgtaggactgagctggtaaacctgtagagtctgaggcgaactccaggtagttagtgtcagaattgagtcaaattg s canFam2.chr12 4011619 214 + 75515492 agaattttcctgagtttctaggagtcattctagaactttgagggttctagagtta------cccccactctgtagccaacttgaagaaaagtgcaggtgacatgaatagctgatagttgagacttgctcatgagctgtgggcaatcttgcagga-tgaatccttacacctgtgggttcc-atgctcactccaggtcgacaatgtcagaactgaaatgaactg a score=5048 s hg19.chr6_ssto_hap7 2650542 137 + 4928567 CTGTCCCACAGAGAGAAACTTATAGTAAGAGTAAGCAAGTAAACCTCTACCTTCTTTGGTCCCAGAGGAAAAGATAAACAAATGTAAGCATTTGTTTCATGTCCCTAAACACAGGTTGCTACCAGCTGTTCATTGTC s canFam2.chr12 4012000 127 + 75515492 CCACTCCACAAGGAGAAATTCAGAGTAAGAGCAAGCAAGTAAACCTGTACCTCATCT--TACAAGAGCAAAGGATAAGGCAG---AAGCATTCCTATCATGTCCTT-----CTGTCTGCAACCAGATGCTCATGGTC a score=11377 s hg19.chr6_ssto_hap7 2650679 497 + 4928567 TAGACGTGGAGTGGTCCTACCTTTAATCTAGAA------------------------------GTTAGGATTTTTTAGGCCTTTG-AGGGTGTCACATAAAAACTAATAAATGTT-AGAGATTCTCTCCCCAGAAATATTTCCACACACAAGaaaatataaatattaatataaaaCATCGTGTGGAAC-----CAGAACCTCTAATATCTTACAAACCTGGGAGTTTTAATCCTAGTAAGAGTCATGCTGAGGGAAGAG--------GTTTGAATAATCATTTCATCATTACAGAATGCCACTCCAAAAATCTA-GACTATAAACTGGGATAGACAAAAACTTGATGTAAACCTATCCT--CAAGGGAATGGGTGGAAATATGTTATTTATTAGTCACTGGTTCATTCAGCCACTCTTCGTGCCTACTGGG--TACTAGATAAAGTTCTCGTCCTGGATCACTGCTCCAAGAATTAAAATTTGTCACTTTTCCCCACCCCTCACACTCCAGCACTTGAACCCGCTTACTACAT---CAAAATTCCACACt s canFam2.chr12 4012500 528 + 75515492 CAGACTTTGAGGGACACTATAGCTACACTAGAAAACCAGGCTGGTGCTCTGAGTTCTTTCACTGTTTGG--TTTTTCATCCTTGGCAAGCAGTCACATAAAAGCTGATAGATGTTAAGAGATTCTCTCCCCCAGGATGTCGCCAGGCACAAGGAAATATAAACGTCAGCATGACACAT----TGGTACCCACACAGACCCATTGAAGTCGTACAGACCTGGGTGTTCTCCTCTTTGCAAGGA----GCCAAAGGCAGGGCAAACACATCCTAAGTCATCATGCCACCAGCCCACAACACCATTGCATGTATCTGTGAGCGAACACTGGAGTGGACAAAAGCTGGATCTAATCATGTAGTACCAAGGGAATTAGAAGACAGGTGTCATTTATTAGACACTTGTTCCTTCGGTCAAAC-CAGTGCCTACAAAGCACACCAGATCAAGTTTCAGCCTCAGATCTGTGCTCCAAGAATGG-----------CTTTCTCCATCCCTCTCCATCCCTCACCCCAACTGCCTTCCTACATGAGGAGAATTCCAAATT a score=2279 s hg19.chr6_ssto_hap7 2651844 124 + 4928567 TAAAATGTTGAGAGGAGACAGACACCAcctccctccctggaagaggaca-acaacactccagtcacccctgcagttgatcatggacatgagttttaagctccaccagtctgatgaccacctgctg s canFam2.chr12 4013028 112 + 75515492 TAGGGTCTTTAGAAGAG------ACCGCCTCTCTCCACAGAGGAGGAAGTCCTattttcccaacatccttctagttacacacag-catgag------actccaccaaacaggtgacaacacgctg a score=21731 s hg19.chr6_ssto_hap7 2652607 862 + 4928567 tgaggtgacagagaggctaggactgtgcagaaagcattttagtaaagatggctgagtgacagtagtgatgtccaatttccaggtgcagcagtgacatctgtcctagcctcagggtccagtgtccagcaccag-gatgtcagaggtgtgagcagtgctgtctgtgctcagcagcaggggcagttgttcctaggagagacctgatccagggtg-ggctgtgaattctgttcttggatgtgtagtttccagcctggttctgtggccttcccCACAATAAAACT-------------AGCCCCCAATACCAATATA--------CAACTTTATGTGTACATTACAGAAA-TTTGGTTTCCATAGTTTTCTCCAAGAAGTGAGTGAGAAATGAGTCTGTGGGCGAGTGTCAGAGAGCG-GCATTCAGAGGTGTTCTTTGTGC------GAGAGCCACATCCTGAATTGTCTGCCTGGCCTCTACCCCATGGTGGAGAGA------ACAACAGAGAATATCACCTCTCATAACTGATGATATACAGCCTCCCTTTTCTTTCTGTGAGAAAAA--TCCTCTTTTCAACAGGGTTTGAAAACCCACCCCACCCACCCACCCTGGGCACTCTCTGATCACTGATCTCAGTGGCTCCCATCTGTCTGAGCAATAGGATTGCTGGCGGGGA---------------CTTAGAAAATACACAGGCCACTCCCCAGAACCCTTGTCTCAGAGTATTACGCACAAGACCAAGGAATCATTTATATGACAAGCCCTAGAGGTGAGGCTGATGCTCAGACGTGTGGG-ATCCTGGTG----TTcttgctactccaagtgtgatctggagaccagcaacatgagctccagccttgtcataaatccagaatctcttgctcaactccagacttccaggat s canFam2.chr12 4013156 873 + 75515492 tggggacagagagaagctgccactatgcagaaggcatg--ggcataggtggcaggatggcagt-gtgtcatccagtc-ccacaagcagcagctatggcagtcccagccaagggggccagtgttctggattaactgagtcagtggtgtgagcagtgacaactgtgcccagcagcagaagccatggttcctgtgtgagacctggtttactgtgcaattgtggattctgttcctggctgtgtagccta-agcctg-TGGTATGATTTTCCCCCAAACAATATTTTATATACATAGAAGACATAGATAAGTATGTATGTATCCCCTATCCTTTGTCTAAGTTCAAGAAAAGTTGGATTCCATTCTTTGCTCCAAGAAATCAATCAGA-----------GGAATAGTTGCAGAGAACAAGCATTCAGAGATGTTTGTCATACTGAACTGTGAACCGCTCCCTAATCCTCCCACCTGACC-ATATCCCATGATAAAACAATGCCACATATCTTACAACAGCATGTCTCATA-CTGACAACAAA-----TGCCTTGTCTCTATGAGGGGAAAAAGTCCACATTTAAAAGAAACTTGAATGCCCTCCCCACCCA---------GGCTTGCTCTGATCACGGATCGCAGTGGTTCCCG-----CTGAGCACTAggatcaagcactaggatcactcatgcagcttctcacaaaatgcacaggcctctccccagactcagagactcagaatattaggcacaagatcaaggaattgcctgtttaataagccctacaggtaaggctgatgcacAGCCACATGGGAATCTTAATGTACATTCCTGCTGTTAAAAGTATGATGTGAAGACCTGCAGCA-GAGTAGCA-CCTCGTGAAAAACACAGAACTTC--------ACCCATACTTCCCAGAT a score=20473 s hg19.chr6_ssto_hap7 2653469 1096 + 4928567 ctcagcaccacatccagatgatcctggtgcaca--------tGGGGTTTCCTTGTCTGAGTGTCCTCTAGACGTGGGGCCAGAACTGTGCAGTCTGCTCTG----GGTGTGGTCTGATCACaccccttagaactg-gaggtccagggttcagtccttgtgctcattcttttccatagtcggtcactccctttgtg-cctcatccatgcttgaggttttaagtctcatatatatggtgtgacctcctaaatctatttctccagcccagtcctttcccctaaactctggagttgtctgtccaaattccacccagct-cccccacccgccttcctagtagac--------atctcctccactgagtgcctgtgatgccccctcctcaggacgctcctgccagagtctccc-catctccactgacagcagctccatccttctactcactcattttacaactatgggtg---tccttgattcgtctttctcacaccacagatacaatccattggcaaatgctgtgag-tccatcttcaaatgcatccagaatcccctcacgccccactatttcccctgctcatgccccag----tcaaggaaaccgacatctccagcctggaatactgcactcgattcctactgttttcccttctgcctccctcgtccctcgcctctcaattctgttctcagcaca-----gccgtcagagagatccttttaaaacagaagtcatatcatggctctcttctgctcaaaactgtcctctaactccccatcccactcagagcaaaggccagatccaaccccactcccctcaagcccacctgttctggccacacctctgacctcacctcagtttctctctg-tccagccctcctggcctccttgctcttctgggaacacag-acaccttcctgccatagtgcatttggactggagcttcctctgcctggaaagaacttcccc-agacatcctc-----------atgtctctcaaatctttcctcaaaagtcacctttgcaacaaggcacacactgactacccagcacaacagccaccttccctgtcc-----ccactgcccacatcctggatcacctgcctcacagcacttaccaccttctag------cactttccttccttactctggttata s canFam2.chr12 71521885 1060 - 75515492 cTGCACA----GTCCAGGAAATCCCTGTGCTCACTGAAGGCTGGGCCTCTCTGTTCTATGCACCTACTAGATGCAGAACCAGA-CAGAGCAGTACGCTCTGTGGGGGTACGCTCTGATCAGCTTGCTTAgccccgagcagtccagggattgggcctgttcct--ttctcttctatggcca-tcacacccttggtgtcctcatctctgctgaaggctctgaaactgattgatgtggagccacttcccaagtataattctccaa--------------------tcttgatatctctgt---------atccaactgacatcagctgcatttcttatagcccagattccacattcctaagtggatgtctgtgatgctgcttcccaatgtc-ctgattccagtgtctccttcatctccatggaaggca-ctgcacacttctccttgc--agtctgaaataccggatgccctccttgatccctccctctcaccccccagaaggaatgccttaggaaatgctgcaaaattcacctgtaaacatatccagcacccactcatttcctattatcttccctccccacattccagatgttcag-----cccccatccccctcctgggacactgccct-gggtcctacaggtt-ccctactagttgctcc--ccttcacctctcaattctgcacgcagcaaacaggtgctggtaaagaaattcaatgaa---------------------ttgatctgttca-----ttcttataactccacatctcactcagagaaaactcaaaaccc--ttctactgtcctcaggctc-catgacgtgatgtca----tgtcatcccct----tgctctctgctccagccccaggggcctcctcaccctccctcaaacatgggacaggctcctgccctggagc-ttgagcatggaggttcc-ctgcctggaaagaacttcccccagacatcctcctacacaattcatgtc-ctccaatctctccc---aggtcaccttctcagggaggctcccccaatccctgcagtaaggtggccaccgtccctgtcctaGAGCAGGTTCTC----TCTGGGTCACCTTCCTCA-AGCTCCTACCTACTTCCAATGTCTACACCTCCCTTACTTACTGTGCTTaca a score=2339 s hg19.chr6_ssto_hap7 2654572 127 + 4928567 tatcgtctgcctcttcccactggaacatatgctacaaaaggccag-agatttttctgattttacttcagtggtgttccccagatgcagaaccattctgtcctatgtctggccaatgacaaaggtcagt s canFam2.chr12 71523275 124 - 75515492 TGTAGTCT-CCCCCGACCACTAGAACATACTCTCCAGGAGACCAGCAGGTTTGCCTCACCTGAGTCTCACTGAGCTGCCCAGATGCAAA--CAGTGTGTCCTGCATGTGACACAGGACAGTTA-CAGC a score=9971 s hg19.chr6_ssto_hap7 2654699 493 + 4928567 tgaatgaatgaTCACTGTAGAGCacctccctattttgaaggcagtatctttattaacatagcctcaggccaagtgctgttttgtggcagctacagcacaaggacccctcacactgagatagaggccgcctatgtttttctcagcagtgctgctTGTGTGCCCTCCCTCCCCATCCCTCTTTCTACAGCAACCCCCTCCCCGCACCCCCTGCCCCAGCACACTGCAGCACACAATCAGGTTCTCTCTTCAGGAAAGAACAGTCCTTGA-TGATGGGTCCAATTTCACAGACAAATGTAAGTCTAAATTAGACTCTGCTTTACAGATTCATGAGTTGGGATTGGATTCAGCACCAAGATCACTAG--------------AACCAGGGCAGGGAGAGAGGGCAGAA--------------------------------------------------------------GAGCAGAGCAGAAAAG-----------------GAGCTCTAGAAGCAGGGCAGGAGGTGAATGGCTCTGAAAATTTGTCTCAGAATGCACAGAGACCCCCGCGTGCAGGGGCCGCCCAGGGC s canFam2.chr12 4014108 542 + 75515492 TGAAGGAGTGACCGGTGTAGAGCATCTCCCTATTCCAGAGTCAGTATCTTTGCTAATGCAGCCTCAGACCACAT-CTGCTCTGGGGCAGCTCCAGCACTGTGACCTATCAGGCTGCCAGCAGCGCC-TCTATACTTCTCTCACCA-------TCCTATCCCTCCTCCCTCCCTCCCCACTCTCACAGCA----CCTTCCTGCACACCACG-----------TACAGCA---------------TTTTCAAAAAACAACCACCCTTGACTCACAACAGCTATCTCCCAACCGAAGAGAAACC--AAGGAGACTCTGCTTCATAACACCTTGACTTTGGATTGGAGCCAGCAC-AGGATCACTAGGGCAGAGCACAGGCAAGCAGGGGATGGAAACACAACAAGAACTGATTTTAAATGAGAAATTACAGCATGCTTCCTGTCTGCCAATCCAGTATCTGTTCCTCTGAGAAGACTGGGGAAACGATGGAAAGAACAGTCGAGCCCTAGAAGGAGGATAAGACTTGAATGAGTCTGAAAATA-ACCTCTGGATACACAGATGCCT--GTGCACAGGGGCTGCCCTGGGC a score=70491 s hg19.chr6_ssto_hap7 2655192 1968 + 4928567 GATGTGTGAGCCTCTGTGGTCACAGCTCCCACTGGACAAGTTTCCACTGAAGGGACAAGGACAATGGAGCAGTGAAGGTGACCCAGCTGAAGACTAACCACATAAAGCCCATGATGGACTCAACACCAAATGGGCACAGGCCCCGTCCACACTCGGCCCCCCACAGCCTTCTCCACACCCCACCTGCAACAGACTCAGCACAGCGAACATGCAGATTCTGGAAGGTTCTCAGGTCT-----TTATTTGCTCTCTCAAATTCCAGGAATTGACTT------------ATTTAATTAATCCATCAACCTCTCATAGCAAATATTTGAGAAAACAAATTTATATTCAGATTCTTATTTTCAGTAGGGAAGTAAGAAGTTGCAGCTCAGTGCACATAAAGTTGAGACAGAGATGGAGACATCCAGCCCCACCTC-TCTGGAACAGGAAAGATGACTGGGGAGGAAACACAAGTCAGCATGGGAACAGGGGTCACGGTGGACACGGGGGTGGGCTGTCTCTCCACCTCCTCACATTATGCTAACAGGGACG-----CAGACACATTCAGGTG---CCTTTGCAGAAAGAGATGCCAGAGGCTCTTGAAGTCACAAAGGGGAGGCGTGAAGAAATCCTGCATC--TCAGTCCCTCACAAGACAGCTGTCTCAGGCTACAGAAAACAACAGTCATGAACAAATTCTGGTTAGTCATGGTAAGTGATGACACTCTAAACAGCCCACCACACACGCGAAACATCCCAATCAAAGAATCTCCATTACCCAGGCCTTTCCCCACTGCCCCACCCACCCCCAGACCTGCCACCCCACCCACTCTAGACCCCAAGAATCTCACCTTTTCAAGCTGTGAGAGACACATCAGAGCCCTGGGCACTGTCGCTGCCTGGAGTAGAACAAAAACAGGACCTGGTCAGAGCCCGCAGGAGACGTGGGAC---AGGAGGAATTA-TGGGGTGGGTG---AGCTCCTC------------------CACAC--------------TCCCGCCCCCATCACTTACACGCAGCCTGAGAGTAGCTCCCTCCTTTTCCACCTGTGGGAAGAAAATGCCCTGTGAGGGGACTGGGAGGAAGCAGGGCCATGAGATCTTAGAGGAACCTCCTCGTCTTGGACCCAAAAGGAATTTCCAGAAGTATGACTACAGACCCAAGGCAGGATCAGGAAACACGAGGAAAGCAAGTGTGGGTCCTGGACCAACTGCCCTCCTAAGGTCTGTCCTTAGCAGGGACCTT--CCCCTGACTCATGAATGCTGGAATCAGGACCCCAACACCACAACCACCAAG-GTGATACATCCGTCCTTCATTGTCACATGTGCTGCACAAAAGAGTAAGTGCTGGCACACAGGGTCCCA---GGCTGCGTTAGCCCCTGTGTG--GATGCTGCTTCCCAGTAATGAGGCAGGGAACACTTCTACCTGGGGCTTGAAACCCCCAGTGGGACAAGAAAACCCAGACCCCACCCCTCACCCCTTCCCTACCTGAGCTCTTCCTCCTACACATCACAGC---AGCGACCACAGCTCCGATGACCACAACTGCTAGGACAGCCAGGCCAGCAACAATGCCCACGATGGGGACGGTGGACTGGGAAGACGGCTCTGGGAAAGGAAGGGAAGATGAGGGGC-------------------CCTGACCCTGCTGAAGGGCTCCTGCTTTCCCTGAGAAGAGATATGACCCCTCATCCCCCTCCTTACCCCATCTCAGGGTGAGGGGCTTCGGCAGCCCCTCATGCTGTACATGGCATGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCTGCCCACTTCTGGAAGGTTCTATCTCCTGCTGGTCTGGTCTCCACAAGCTCGGTGTCCTGAGTTTGGTCCTCGCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGGCCCAGCACCTCAGGGTGACCTCATGGTCAGAGATGGGGTGGTGGGTCACATGTGTCTTTGGGGGGTCTGATGGGAAGAGTCAGAAAATTCAGGCGCTT s canFam2.chr12 4014891 1923 + 75515492 GATGCCCAAGTCTCTATGATCACAGGTCCTGGAAGGACAGGTTCTACTGGAGGGACAAGGACAAAACAGCAGAGAGAGT-CCTCAGCTGAG---TGACCATGTCACACCCTTGCTGCACTGAGCACCAAGTGGGCATGAGGCTCCTCCATACTAGGCTCCTCACAGC-GTCTCCTGTCCTCACATAGAGCAGACACAGTACACCAAATCTGCAGGTTCTGGAAGAGTCTCAGTGCTCCCATTTATTTCCTCTCTCAAACTTTAGGAATCTTCTCCTTTCAGATCAGATCTGACTAACTGATCAGCTCCTCATGACAAGAACTGGAAAAAACAATTTCACATCCACAGTCCTATGTTCAATAAGGAAGTAAGAAGTTGTAGCTCGGTG----TAACATAAAGACAGGGATGGAGATGACCCGCTCTCCCTCAGCTgcaacacaaaagcaacacaaaagcaGAACACAGGTCTGTCGGGGGAGGGGAGTCACG-TGG----GGAGGGAGCCAGTCTGCCCACCTCCTCACATTATGTTAATAGGAACATATTTCAGACACATTCAGACATGCCCTTTGCAGAAAGAGAAATCAGGGG-TGTTGACATCACAAGGTGGGAAAGTGAACAAATCCTGCATCACTCAGTCCCCCACGAGGCAGCTGGTTCACACTATGAAATAAAATAATCATGAACAGATTTGGGTCAGTCATA-TACATGCTGACTTTCTCAACAGCTCAGCACATGCTCAAAATATCCTACTCAAAGAATCCCCACTACCCAA--------TCACGGCCCAGTCCCCTCCC--------CACTCCCCCC-TTCAGGCCCTCCAAGGTCTCACCAGTAGAAGCAGAGAGAGA---------GCCCTGGGCACTGTCACTGCCTGGGGCAGAACAGA--TAGAATGTGGTCAGAGCC---AAAGGAGATGAGACCAAAGGAGGAGCTAGTGGGGGGGGTGCCAAGATCCCCATGGGGTCCTGTCTGTACCACCCCGGGGTTTCAGGGATCACCCCCTCCATACTCATGTGCAACCTCAGCATAATTCT----TCTTCCACCTGTGGAAAGAAAACATCACATGAGGTGCCATGGAGAAGGCATGACC-CGAGATCCTAGGTGAAACTCATAGCCT-GGACCACACGGAAGTTTCCAAAACTTTAACTACAGACCTATGGAAGAATCAGGGA-CATGAAGAAAAGAGATAGCAGGATGAGACCAACCATTCTCCTGGAGTCTGTCCTCAGCAAGGACCTTGCTCTCTGACCTGTGACCACTGGGGATCAGATTCCATCACCACATTCAACAGGAGGGATGAGTTTGTCCTTCACTCTCACACGTGCTTTACTACACAGTGAATG-TAGCAATGAGCTGCACAATGGAGTGGACAAGCACATGTGTGCGGGTAGCACTTCCCCTAAATGAGATAGGACAAACTTCTACCTGGG-CTTGAAAC---------GCTGAGAAAACTCAGA---------GCATCCCCTCCCTACCTGAGATCTACTTCCTCCACAGGACAGCTCCAGCCACCATAGTACCAGAGACCACAA------AGACAAGCAGACCAGCAACGATGCCCACGATGGGGATGGTGAGCCGAGGAGGGGACTCTGGGAAGAGAGGATGAGGTGAGGGCCTTGCCCCTCAGGTCTCACCCTCAACTCTACTGAAGTTCTCCCAC----------AAGGG------CTCCTGATT----TCCTTACCCCATCTCCGGGTGACAGGCTCCGCCAGCCCCTCATGCTGCACGTGGCACGTGTATCTCTGCTCCTGTCCAGAGGGCACCACCACAGCCGCCCACTTCTGGAAGGTCCCATCTCCTGCAGGCCTGGTCTCCACAAGCTCTGTGTCCTGGGTCTGGTCCTCCCCATCCCATT-----------------------------------------TGGCAGGTCAGGGTGACCTCACAGTCAGAGAAGGGGTGGTGGGTGAGA-GTGCCTTTGGGGGATCTGAAGAGAAGGGTCAGAAAATTCAGGAACTT a score=76512 s hg19.chr6_ssto_hap7 2657160 2110 + 4928567 TGCATCTCTCATGGGACACCCTAGGACCACCCATGTGACCAGCCTGAGAATGGACAGGACACCTGGGGTGGGGAAGGGGCACAG-AACCCAGACACCAGCCTGGACGCAGGCACCTGGGATAATCTCCTATTCATTGGAAAGTTCGAG----------------------------------TCTCTGAGCGGGGAACAGGGACTTCTGCTCCTGATCTGAGTGGAGGTAAAGTGACTCAGAAGTGCTGGAATCAGAGCCCCAAACACACTGAGTGTGAGGCAGAGAACAAGGCCTGAGAGGAAAAGTCACGGTTCCCAAGGCTGCTGCAGGG-----GTCAAAGGGGACCCCTGATCAGT-ATTCTAGGGACTGTCTTCCCCTCCATTTCCTCAGAGA-CGTCATCCCTTAATTGTCCTAGAGAGAAGAGGGGGCCCTCAGAG----------------------GAAACTCAGGAAAACTCA----TGCCATTCTCCATTCAAGGGAGGGCGACATTCTAGCGCTGATCCCATTTTCCTCCTCTTCTCGTGGGAGGCCATCCCCGGCGACCTATAGGAGATGGGGAAGGCTCCCCACTGCCCCTGGTACCCGCGCGCTGCAGCGTCTCCTTCCCGTTCTCCAGGTATCTGCGGAGCGACTCCACGCACAGGCCCTCCAGGTAGGCTCTGTCCTGCTCCGCCACACGGGCCGCCTCCCACTTGCGCTGGGTGATCTGAGCCGCGGTGTCCGCCGCGGTCCAGGAGCTCAGGTCCTCGTTCAGGGCGATGTAATCCTTGCCGTCGTAGGCGTCCTGGTCATACCCGCGGAGGAGGCGCCCGTCCGGCCCCACGTCGCAGCCGTACATCCTCTGGATGATGTGAGACCCTggccccggccccgcggtcagccccgtcccccgagccccgccccgccccgACCAACCCGCGGGGATTTTGGCCTCAACTGAAAATGAAACCGGGTAAACGCGCCTGGGGCTCTCGCCGGTC-------------GAGGGTCTGGGCGGGTCCCGCGGCCTCGGGGGCGGATCTCGGACCCGGAGACTCGGGGCGACCCGGGCCGTACGTGGGGGATGGGGAGTCGTGACCTGCGCCCCGGGCCGGGGTCACTCACCGGCCTCGCTCTGGTTGTAGTAGCGGAGCGCGGTGCGCAGGTTCTCTCGGTAAGTCTGTGTGTTGGTCTTGGAGATCTGTGTCTCCCGGTCCCAATACTCCGGCCCCTCCTGCTCTATCCATGGCGCCCGCGGCTCCTTCCTCGGACTCGTGGCGTCGCTGTCGAACCTCACGAACAGCGTGTCGTCCACGTAGCCCACGGTGATGAAGCGGGGCTCCCCGCGGCCGGGCCGGGACATGGCGGTGTAGAAATACCTCATGGAGTGGGAGCCTGGGGGCGAGGAGGGGCTGAGA-CCCGCCCGACCCTCCTCCCGGCGCGGCTCCCCGGGTCCTG------CGCCC---------------------------------------------CCGCCTGCGGTCCCCTCTCTCCTCCCCACAGAGGCCATTTCCCTCCCGACCCCGCACTCACCGGCCCAGGTCTCGGTCAGGGCCACTGCCCCCCAGAGCAGCA---------GGAGGAGGGTTCGGGGCGCCGTGACCCGCATCTCGGCGTCTGAGGAGATTCTGAGTCCGGGTGGGTGCGTGGGGACTTTAGAACTGGGACCCCGGCGACACTGATTGGCTTCTCTAGACACCCGACACCCAATGGGAGTGGGAAATGGGGACGCGTCACGAGTATCCTGGAAGAAGGACCCGACATAGGTTGGGAGA-AGAAGTGAAACTCGTGGGAGTGGGGAATCCCCAACGCTGCGCCTCCCCA-TTGCAGACGCGGCCCTCGGAGCCTGAGACCCTGAGAGCCCCGTCCGGGACCTGGGACTTCGTCCTGATCCCTCTTCTCCTACACCAGCCTCTTTGTCACACTGTCTGCCTGAGTCCTGGACAAGGATCTGTCTGTGGAAACCAGGGAGAGACCCCCAGGCTGCGCCCAGCCCCTTCCCCTTCACTTCTCCTCCTGGAATCCCTGTCCCTGAACTGGACTCCCTGCCTCTCACTCCTTACCTCTCCTCTTGGATCTTGTGTAGGGAAACTGATCA-CGGGGAACTTGATGCCAGAGAGTGAGCTCGCCCTGGGAATGGAGGTGTAGAGACAGGGGTTTTCTCTCTAAACCTGGCGAAGTTTTG s canFam2.chr12 4023285 2104 + 75515492 TGTATCTGTCTTGGTCCACTGAAGCAGCTTTCATGTGGTCATCCTGAGAATGAATAGGACAACTGGGGTGGGGGAAAGGAGCAATAACCCAGACACCAGCCTGAACACA-----------TAATCTCTTCTTGTTTGGAAAGTTCTAGAATTAGGATGAGATGGCCCAGTGTAGAAGGCAGGTTTTTGAGAGGTAAAAAGGAATTTCTGGTCCTGGCCTGGCTGGAGGCCAAGTGACTCA-AACAGGTGAGGCCTGA-TTCCAAACACTTGAGGTACAGGGCTGAGAACAAAGCCTGAGA----AAATC-----CCCCAAGGCTCCCAAAGGGAGTGAGTCAAAAAGAACTGCTCATCAGTTATTTCAGAAATGGTCTCCTCCTCCATCCCTGGAGGGAATGTGA--CCTTAATGGTCCCTAGGAGAAAGGCAGACCCTTAGGGCCACTCTCTAGTACCGGATCTGAAAACCTAGGCAGAGTTAGTCTCTCCATCCATGACGCATGGGAGGGCCATATACTGGTGTGGATTCTATTT-CTTCCTATCCTCTCCCACGGCCTCAGCCTGAGGC------GAGATCGGGGAGGCCCG----GGGCCCCGGTACCTGCGCGCAGCAGCGTCTCCTTCCCCATCTCCAGGTACCTCCGCAGCCACTCCACGCACGTCGTCTCCAGGTAGTTCCTCAGGTGCCCTGCATCACCTGCCGCCTCCCTCTTGCGCCGGGTGATCAGCGCCGCCGCGTCCGCCGCGGTCCAGGAGCGCAGGTCCTCGTTCAGGGCGATGTAATCGGCGCCGTCGTAGGCGTCCTGACTGTACCCGCGGAGGAGGCGCCCGCCGGGCCCCAGGTCACAGCCGTACATGGTCTGGATGGTGTGAGACCCTGGCCCCGCCCCGACAGGCCGCC--------------------------AATCAGTCCA----------------AAGAGAAAGTAAAACC---------TCCCGGGAGTTCCCGCGGGTTCGGGACGGGGACGAGGGGGAGGGGCGGGGGCCTCGGACTCGGGG-TGACGCCCGGACCCGGACCCTCGGGGCGACCCGG-CCGGTCG-GGGGGATGGGG-GTCGTgccccg-gccccgggcccgcgccgcTCACCGGCCTCGCTCTGGTTGTAGTAGCCGCGCAGGGTGTCCAGGTCCACTCGGTACACCTGTGCGGTCTCCTTGAGGTTCCGCGTCTCCCCGTCCCAATACTCCGGCCCCTCCTGCTCCACCCACGGCGCCCGCGGCTCCATCCTCCCAGTGGCCGCGTCGCTGTCGAACCGCACGAACTGCGTGTCGTCCACGTAGCCCACAGAGATGTAGAGGGGGTCCCCGCGGCCGGGCCGGGACACGGCGGTGTGGAAAAACCTCAGGGAGTGGGAGCCTGCGGAGCCGACGGG--TGAGACCCCGCCCGACCC-CCTCCCGCCgcggggcccggggcccaggggagatgcccggggcggggcggaggcgggaggggccgggggcggcggagaggcggCTTCCCGGGGTCCCGCGTCCCCGCCCGCC---GGTCCCCTCGCTCCCG--CCCGCACTCACCCGCCCGGGTCAGGGTCACGGCCAGGGCCCCCGAAGGCAGCAGGGGCGGGGGGGGGGGGGTGCCGCGCATCACGACTCGCATCCTTGAGGTTCCAGAGACCCGAAGAGCCGGCAGGGGT----GGCCCCGCAGGCCCGGACCCCGGGGACGCCGATCGGCTCCCCTAGAACCCCGCCGCCCAATGGGGGTGCGCGCTGGGGCCAAGTCCCGAGTATCCAGGCGGGAGGCCCTGAGGCGGGTTGGGAGAGGGGAGGGAGGCGCGCGGGGGACGGAA----------CTGGGCTTCCCCGCCCCCAGACACCGCTCTAG------------------GTCTTCCCGGAGACCCAGGGCTTTGCCCTGATTCCCCTCCACCTGCACGGAGCGCTTTCTCTCACCGTCTCCCTGAGGCCTGGCCGGCGGTCCTTCTGAGGAAACCGGGGACAGA-CACCAGGCAGGGATCAGCCCCTTTTTGTCC-CTTACGTTTGTGGAAACCCTCGACTTGAGCTGAACT-----------ACTCCTTACTTCTCCGT---ACTCTTCTGAAAGAAAAATCACCGCCAGGAAACTGGATGCCAGATAGTGAGCTCG-CCTGGGAACGGAGATGGAGAGACAGGGATTTTCTCTTTAAACCT---GAAGTTGTg a score=4098 s hg19.chr6_ssto_hap7 2659270 208 + 4928567 TCTGAAGCCACCACACAGAGATTCTCATAGAGACCAGTTTCCTTTTTGTTTATTAATACAGTAGGTAGCACAATATTGGTAATCCCTGAATGATTAGAATTCCAATCTGCAAAAG-----------------------ACCTGTGTCAAAACAGCATTACAATTAAACTCTCAAAGCTCCTAAGTTTTACTTTCCCAGACTATGGATCTGTGACTCTGGGTTGTTGCA-TTT s canFam2.chr12 71529709 206 - 75515492 CTTGGGG-CACTAGCTAGAGATTTTCACAGAGGCCAGTTTTCTTCTTGTTTCTTAAC-----------CATAATCTTGACAACCCCTGAGAGATCGGGACTCGCATGTGTCAAAGTAGTGATTTTATCCTTTCTGTATAAATTTGCCTAAACAGCTTTGAAATAA-----CCAAAGCT-GTCATTTTCACTTTCCCAAGCCA--------AGACTTTAAGTTTTTGTGCTTT a score=16376 s hg19.chr6_ssto_hap7 2659478 575 + 4928567 AAAATTATCTTCATTCCCCA-CCCCGAGTTTCCCTATATGAGTCCAGAACATCTCCTGAATATAAAGAAGCGGGGTTTGTTACTGTCTATTGCAACCGGGAACCTGTAGTCAT------CACCTCAAAGTTGGGAGTGCTCCATGCAGTCCCAATGCTCTTCACCGACGCTCAAGCACTGCCTGTTTTCCTGAACTCCGCACATCTAAGCAGTATGCATATTTTATCTGGACACTGGGTATTTTTGTAACTCTTTTTTTTTTAATCATAAGGAGCCAATTAGTTTTTAGGAAGTCTAACAAAATGTATTAAATACCGAATGCAAAGAACCCTCTGCC---------------AGACTC-------------------------------------------TTCCACTGCTTTAAAAttcttt-cccctgctccttttcctcacctcctgcctctccagcccttctctctgcccctctcatccctcacacccccgctccccttagtccccgccaccctttcactcCTGAATTGTGGCACTAACACTG-TCCCTCACCTCCTGCCC-ATGTCTGTTCTCCCCAC----AGTGCTCAGCAGTCCTGCTAATGTGACTCAGGTCATGTCATTTCTTCACTTGCAatggtt s canFam2.chr12 4025537 620 + 75515492 AAAACAATCTTCATTCCATAGCCCCAAATTTC----TGTGAGTTCCCCTCATATCCTCAATACATGGAAGCATGGTTTGATACTATACATTTCGATCAGGAGCATGTACAAACTTGAAGCACCTCAAA-TTTGCAACGTTCCATGCAGTCAAAATGCCCTTCGCCAGTGCTCCTGCATTGCCTCTTTTTATGCATTATTCACATCTAAGCAGTGCACATATTTCGTCTAGAC-------ATTTTTTAAACTGATTT--------GCATAAGGAGGCAACTGATTTTCAGGCAGCCCCACAGAATATAGTAAATTCTAGATGCAAAAAATATCTTGCTAAGACCTGGAAATAGAGATTCCATTTTTAAAAAGGCTGTATAACAACGTATTTAAATGTGAGGATTCCACTGCTGTAAAACTGGTCACCTCTGCTTCTCTCCCT--CCGCCTGGGTCTGCAGCCCTTCTCTC--CATCTCTCATCAATTAGGGCCTCTCATCCC-GAGTCTCCACC-CCCTCTCActcctg-attggggccctgctgccactccaacacttgctaccctaaggccactctcgccacctgggacagacagcgatcctgctgatatgagtcaggttgtgtcatttcatcactgaaaatgctt a score=49343 s hg19.chr6_ssto_hap7 2667674 766 + 4928567 GGTCTTGGAGAGGCA---CTTAATTATAGCAAGAA-TATTTCATAAGTGGTATCTGATATAGTC-----AAGATTAGTGGGGAGTAAAAACATGTTGCTTAGAAATAATTATCCAAAGATCTAAAGTCAACAAAAGTCTTTTTTT----CTAATGTAAAAATATAAACTTTTTTTTCAGAGGGAGGGGGAAC-AACTTAAAATAAACCAGAAAACACCTTCATATTAATCATTCTTCTCATATACTTGAAATTTGTACTTAAT----------------ACATCCGAGAGAACGCCTGGATATTCTGGCAGAATTTTATATTTCTCCAAATCAATTTCTGGAAAAAACGTGTCACTTTCAAAGTCCTGCATGATCCTTGTCACAAATAGTTTAAGATGGCCTGGGCGACTCATGGCTTCCTTATAAACAGAACTGCCACCAACTATCCAAATCATGTCTACTCTATTTGCTAATTCTGGTTGTTAAGTAAGTTTTAAGATCTCATCCAGACTTCTGGCAAGAAAATGAGCTCGTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTTTGAAAGTCGATTCTTCCCAGGAATGGAGAACCAGGTCTTCCTACACAAAATCACCAGATTCTGTTTACCTTCTACTGAAGAGATTGT-GTCATTCTCTGGAAATACCTAAATTCATTCCTGAGCGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGAGACACAGCGACGATGCAGTTTAGCAAACGAACCATGACAGCAGC s canFam2.chr19 37032859 788 - 56771304 GGTCCTTGATGGGCAACACACAGTTATAGCAAGAAATGTTTCACAAATGATGTCTGATATGGTCTAGTTAAGATTAAT-------AAAATCACACTGCTTAGAAAGAATTATCCATTGACTTAGAGTCAACAAAAGtttttttttttttctaatattaaaatataGATAGAATTGTTTGGTCGGGGGGGAACTAACTTGAAATAAATCAAAAAATATCTTCACATTAATCGTTCTTCTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACATCAGAAAGAACACCTGGGTATTCTGGCAGAAGTTTATATTTCTCCAAATCAATTTCTGGGAAAAATGTGTCACCTTCAAATTCATGCATAATCCTTGTCACAAATAGTCTAAGATGGCCTGGTTTGTTCATGGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGCTAATTCTGGTTGCTCAGTAAGTTTTAAAGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGGTCTCTGCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGAATAGAGAACCATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCCACGGAGGAGTTCGTGGTCATTCTTTGGAAACACTTGAATTCATTCCTGAGCGGGGGCCAGGGCAGGTCCCCGTTCCTGCCAATGCCCAGGTTCTGGGACACGGCGACGATGCAGTTCAGC--GTGCACCATGGCTGCGGC a score=11673 s hg19.chr6_ssto_hap7 2672882 328 + 4928567 AAAAGAAATATTTCAGATTCAGAGAATTGTCTTTTTTTAGTACTAACT---AAAACATTTAAAA-AACTACATTTAATGATGTCATTCTAAATTGGCTCAGTAATATTAAATGAGGAATTTATGTTCCAGCAAACA--------------------GTGGA----------TGAATGTGTCTATGGAGAGCATT--------------GTTTCAAAATGTTTTAACAA-ATATATCATTGAAGTTCTTGCTATTTTATTCAATTTCAGCCACTATTCTTTTTAG-------TTGATTTTTTTGTCAATCTTAAATTTTCAAAAGAAAGATTGTTTTCAAATTATTTTATATTTAATGAATAAAGTTATACATTACTGATTATTT s canFam2.chr32 17282358 373 + 41731424 AATAAAAATATTTCTGAACCATTGAATTGTCTTCtt--aatattaattgataaaatatttaaaaGAACTATTTTGCAT--TGTCATTCTAAATTGATTCAGTAATAGTAAATGAGGATCTTATGTTCCAGTGAACATGACAGCGATTATCCTAAAGGCAGAGTTACTTAATTAATTGGGTCCATATACATTCTTCCTCCTCAGAGGTATTTTCAAAATGTTTGGACAGTATGTATGATTAATGTCCTTGCCATTTTATTTAATTT---CTACTGTCATTTTTAAATATACTATGTCTTTTTTGTTAATCTCAAATTTGCAAAGGAAAATATATTTTCAAATTATTTTGTATTTAAGG----AAGTGCTATATCACTAAGTATTT a score=12686 s hg19.chr6_ssto_hap7 2679237 241 + 4928567 CCATCAGGAGCAGTTGTTCTTTGGCCTCCGGGACACCGCAGGGCTGAGTTGCTCCCTGCCTGGAGGTGGTCCCATGGGGCCCACTGTCTGGGTCAAGAATGGTGCAGAGCTGGTGTCCTCAAAATGCATCCTGGTGGAGCCCCAGCAGCTGCAGGTGCTGACTGCCTCTCACGAGGACCCTGGGGGCCTGCAGCT----GCAGCGACTCACCCAGCATGAGCGGTGCCA-CTCAGTGTGCACATGA s canFam2.chr3 29577061 245 - 94715083 CCAGCAGGAGCCACTGGTCTTTGGCAGCGGGGACACTGTGGAGCTGACCTGCCCCTCACCTATAGACAGTCCCACAGGGCCCAGCATCTGGGTCAAGGATGGTGTGGGGCTGGTGCCCTCAGACCGCATCCTGGTGGGGCCTCGGCGGCTGCAGGTACTCAATGCCTCCCATGAGGATGCT-GGGACCTACAGCTGCCGGCAGCGGCTCACCCAGCGCATCCTGTGCCATTTCAGCGTGCGTGTGA a score=4701 s hg19.chr6_ssto_hap7 2679478 60 + 4928567 CAGATGCTCCATCCTCAGGAGATGACAAAGACGTGGAGGACAAGGCTGAAGACACAAGTG s canFam2.chr3 29577412 60 - 94715083 CAGATGCTCCATCCTCTGGAGATGACGAAGACGGGGAGGATGAGGCTGAGGACACAGGTG a score=11295 s hg19.chr6_ssto_hap7 2679538 295 + 4928567 CATAATCTCCTACTCACCTCATCTGGCACATTAGAAAC--CTGTCCTCGGCTCATGCACAAATCCACCTCTGGGTGGCCAAAGGCTCCAGCTTA-CTACAGAGGCCATGTGTACTCTGTGTAATCAACA----CACCCCAGCTTCTTCCCACCTCCAG--TCATCTCACTGTATCTGACATGATGCCAGcag-----------------------attgtctcagctcaaattccagctccattacttactgctgtgtgaccttgaccaagtcacttaacctctctgtgctt-cacgagcttccattgt-aaaTGCGTGTGTTTACATA s canFam2.chr3 29615909 322 - 94715083 CACAATCTTCTATGTATCTCACCCGTCACACTGGAAATGTCTTTCCTTCCTGAGTGCACAAACCCACTTTTGGGAGGCCACAGGCTCCAACTTAACCTCATAGG---TGTGCACT---TATAACCAACATACACACCCCAGCTCCTTCTCATCTGCTGGATCATCTCACTGCACCTGGCCCAACACCAGCAGtgaggatatgagctctacagctgcctgtccctgttcaaattccaa-tccaatacttactgctgtgagaccttgggcaacttaattaacctctctgtgctttcaggagcatcctctattaaatgtatgtgataatata a score=6601 s hg19.chr6_ssto_hap7 2679833 215 + 4928567 TGCCAAGTACCCAGAAAGATGCCTGGAACATGGCAACACCCACCACAGAAGTAGTAGCTGCAATTATTGCCTCATTAAAACAGTGGAGATGTCACCCATCAGGGCTAGAGAGAATTTGGGAAAT-CCTGATCT----GCTTCTGGTTTCAGGTGGGGAAACCTGTAGGACCAGCAGGAACACGGCTGCCTCAGT-----------------------GCAGCTGGCACAGGGCACTGCCAGCC s canFam2.chr3 29616448 241 - 94715083 tatggagtacccagaacagtgtctg-cacacagcaaCAACTACCAGGGAGGTGGCAGCTATGATTACTCCCCCATCAAAGCAGTTGAGACGCTGCCAGTCAGCGCTGAAAGGAAGCTGGAGAATGTCTAGTTTAGCAGCACCTA-TCATGGATGGGGAATACCAAAGCACAAACAGGGACAGACCCACCTCAGTCTGCAACCTGTTATCAAGTGGGTGCAGCGGGTACAGGGCACCACCAGCC a score=13045 s hg19.chr6_ssto_hap7 2680300 778 + 4928567 TGGAGGGGCAGGTGCCCCCTCCTCAGTATGTCTCCCCCAGGTACTGTGAGGACAGGTGGAGGCTGTCTCCAGGCTCTCACCCGGCCACACACCAGCACGTCTCCAGGTTCCTCTCAGCCCCGGTTACCCCCAGCCCTGCAGTTAATCCCTGAGCTGGGAAGGA--GCCCTTGAATCCACCCTGTCCTGTGTCACAGT-------------GTCGTCCACTCGGGCTCA-CATTGCCACTAGGCCACTTGGCAGCCAAGGGATGGGGCCACGTTTTGTACTTCCTGAAACATGGCTTCACCTTCAAGTGCGGGTGATGACAGTGC-CACACA---GAACAAATGTTACTGTCTATCCTCATCGACCGTAATTTTCCAGTTTTCCAACCCTCAGGGAGCAAGGAAGAGCATGGCTTCCACCAAAGGGCGTGAGGTCAGCAGTCTTAGG-GGCAACCAACAGGCAA------AGACCCCTGAAAATAGACCCCGCAGGGAAGCACAAGTATTCACTGACGGTGG-----GAACCCCACAGATCTGGCCGTCTTCAAGCACATCAGAGAGATTGCCATGAGGAGCAACTTAGCCAGAAAGACTTATTTGCCTCCTCAAAAAGCGTAAAATTATGTAACATAATACTTTAAAAATTTCTATCAACACAAAACTAATCTGGGCGCTGTGGCTTCTGGTGAGCCACTGGGACAGACGGCATCGTCAGGAAGGCTGGCTCTGTGGTGCCTCAACCTGCCAGAGCCCAGGATGGTGGTGGCCTCCCCAGAAGCAC-CTGGCAACTCACCTGCACAGGGCC s canFam2.chr3 29616746 683 - 94715083 TTGAAGGGCAG-----------TCAGT----------CCTGTGCTGTGAG--------------------------------------------------CCCTAGACACCCTCCACTCCT------CCCCACCCCCTCGATCAACACCTGAGCTGGTAAGTGATGGACTTGAACCCAACCTG--CTAAGTTACAGTCACCAAGGGACAGGCTGCCCA---GGACACAGCAGCGCTGCTCAGACCCTTGGGTCTGTGAGACTGTGGCCACAGCCTGTGCCCTTGGCGCCCTGGCCTTGCCTCCCAACATGGGCAA--ACCGTGCTCACACATGGGAATAAGCATTACCTCCTCTCTCCCTCAAACTTAATTAACCAATTTTCCAACCCTCAATTATCAAGGAAGCAAGTGGCTTCCACAAGAAGGCATGATGTCAGCAGTTGCAGGAGACAACCAACAGGCAAAGACAGAGACTCATGAAACCAGAGCGAGTAGAAAAACACCTGGTTTATCCAGCTGGGGCCAGAGATGCTCCAAGATCTGGCTATCTCCATGCATACT--GGAGACTATTATTACTGACAATCTAGCCAGAAAGATTTAGCTA--TTTTCAAAAAGCATAAAATTACATAATCTATTGTTTTTAAAATCTTCGTCAGAACACCACTGACATGGGCACTGCTGCCT--------TCCCAGGGACAGCTGG----------------GGCACTGCTCTGCCCCACCTCACCAAAAGCC----------------CCCGAGAAGCACACACCCACCTTACCCCTACAAGGCC a score=4583 s hg19.chr6_ssto_hap7 2681269 106 + 4928567 AGCTCGGGTATTTCTATTAGAATCACATGTTTTACTTTAGGATGCTGACGCCTGTGTCCATCTCAACCTGGGCATTGTGCTGCCACCTTCCAGAAGAGAAAAACTA s canFam2.chr3 29617429 103 - 94715083 AGCTTAGGCGCTCCTGTCAAAGCCTCCCACTTTACCTTCAGGTGCTGACTCCTACATCCA---CAACACAGACAACCTGCTGCCACCTTCAAGAAGAGAAAAACTA a score=8225 s hg19.chr6_ssto_hap7 2681376 455 + 4928567 GTAGTGCCTTGTGAAGGGGC----------------AGCGTTTCTCATTTCTGACAACGTCAGTCCCACAGCCACCCAGATGAGTAGATGGGGGACACAGGGGAGGACCCAGACCTGCTCTCCTCCCACAGCACATTCTTGAGTCTTGGAAAGAGTTGTGAAAATGCCACAGGTACAAACACCTGCAGGCCACTCCCACAGGGACAGCTCCGTGAGGCGGTGCCGCTCATTCCCACAACCTCCTG--CCACAGGCAACACTTAACACTTAGACAGTGACCCAAGGCCGACCA-GGGAGGACGCC-AGCCAGGATGTGTCATCCTCAGCTCTTCA-GGACATGATGCCAGCAGGGGCAAAGTTATCCCTAGCAACAAGACAGAGGAAGAAAGGATAACAGAAGAAAGGACAATGTCACAGTAGCCCCCATGACCAACAGAGACGGTTCCAGAAGTGCAGGACAACTCTATATGCAGA s canFam2.chr3 29617686 400 - 94715083 GTAGTACCTGGCAAAGAAACGTGTTCATAGGGTTAGAGCATTTCCTGTGACTCGTGGCATCAGATGCACAG---------------AGTGGCAGGCAAAG----GGACCCATGCCTGTTCTC--CCCATGGCACCTTTGTAACTCCTGTCAATGGCTGTAGACATGCCACAGGCAC-AACACCTGTGGACCATT--------------------------------TGACTCCTAACATGTCCTGTTCTTAAGGGGGCAGTTGCCCC--AGACAATGTCCTGAGGCTGGGCATGGGAAGATCCCAAATCTTAACGTGCTACCTTCAGTTCTTCAGGGACATGATGCCAGCAAGGGCAAAGTGA-CACTAGAAA--------GGGAAGCAAAGAT-----------GGACAATTGAGTAAGAGGTACCAGGACTAAAAGGAATGATTCCCAAAGTGCAGGACATCTCTGCCTGAGGA a score=3484 s hg19.chr6_ssto_hap7 2681954 181 + 4928567 ATGAACTGACAGATACACA-GCAAAGCTCCACATACTTTTCCTTTTCTTTGTGCCTGCAAAGTTCTTCTTCAG--TGTCTCTCTCTTTTCAGCTACTACTGCTGGTTGGTTTAAAAAAACA------------------------------------------GGACAA-------------------------TAGTAAAAATTAGAGACAAGTGTTTGGCCATAAAGAGAAACACTGGCTACCTCCCGT s canFam2.chr11 62935961 250 - 77416458 ATGGCCTACCCGATACTCAAGCCAAGTTCCATATTATGTTTTTATTCTTTGCTGCAGCTATGTTTTCTGTCAGCTTGTCT-TCTCTGTTTGGCTATCATTGTTGGCTAGTCAGCAAAAATAAATCTACATTAGAGGCATTTAGAAGTCCCGTGTTTCGACATGGAACAGATAAGAATGGATTCAGCTTGGGTTTCAGTAAAAACATGCGACAAGTTTTTGGTGATGAAAAGAAGTACTGGTTGCTACCCAT a score=6852 s hg19.chr6_ssto_hap7 2682135 98 + 4928567 ATTTTCAAGCGTGGGTGATGGTTGTAGTTTTCCATCTCACCTTGTAGGGGATGAATCCAGAAAAAGCTTCTGTTACAAATCAAAATGGACATGCCAGA s canFam2.chr25 19933548 97 + 54563659 ATTATGCAGCTTGGGTGATGGTTGCAGTTTTCCAACTCGCCTTGT-GGGGATGGATCCAGAACAAGCTTCTGTTACAAATCAAAATGAATATGCCAGA a score=5914 s hg19.chr6_ssto_hap7 2682233 112 + 4928567 AGTATTAGCTCAAATCAACCTTGTCCTGTCTAACCACTCAGTGACCCAAAATACCA---CTTGGACTATTAATCTCAGGGGCCAGAGAATGGAGCTGGAGAAGGAGTTGTTAGAT s canFam2.chr25 19935102 115 + 54563659 AGTATTGGCTCAAATCAACCCTTTCCCATCAAACCGCTTAGTGAATCAAAAAACCGATTATTGGACAGTGAATCTCAGTGGATAGAGAATGGATCTGAAGAAAGCACTGTCAGAT a score=4361 s hg19.chr6_ssto_hap7 2682345 74 + 4928567 CGGGGACAAATAACCATGTTATAGTGGCAATAGGAAATGGAAGACCATTTGCTCATAACCA-----CTGAATCACAGCA s canFam2.chr25 19936524 79 + 54563659 CAGGGACAAATAACCATGTTACAGTGGCAATAGAAAATTGAGTACCACTTGTTCATAACTAATCATTTGAATAAGAGAA a score=22676 s hg19.chr6_ssto_hap7 2682419 660 + 4928567 AGGTGTATAAACACACATCATTGACTGATAGTTTCAGTTCTATGCCCAAGAAAATCATCGATGGAGTGAAGTAATTGAACTATCACAGAAGATACATTTGTATTTTTTCTTTTTTCAACTTTTAGTTTCAGGGGGTGTGtatatatataatatttgtgtatataaaataatatatatattattaaaGAAAGCCTTTGTACAGTTTGCTGGAGCCACAGAAGCACCACTCCAGAGCAGAGCAATGCCTTAAATCTTCA-GTGTTCATTTGTAGAACATTCACTAGCAGCTACAAAAGTGACTTAATTTTCTTCTGGAAATAATGCTTGC-CTGTTGTGAGATGTTGGAATATATATGAACCATCA--TTACATGTTAACATGCCATAAGGAGTTTTTGATACCTGATTCACATTATTAGAGTTGCTTCTTAGTATCCATGTGAATTTTCACTCCAAAACACAAGCCAGAAG-----CTTGAGTGAAGGACACCTAGGGCAA-ATGGTGGCTGAAAGTGAGGAAGA--TCCAAATTACTGTTGCTTGTACTGTATTAGGAAAAGAAAACAATTCTTCTCTTCTTTGCCAATTAAATTCTTAATTGCTAATTTATAATTATGCTTATATACATTTCAACATTT-TAATAAAGTATTTTTTATGGTTAGCTATAAAa s canFam2.chr25 19938029 563 + 54563659 AGGTGTATAAAAACGTATTATGGACTGATATTTTCAGTTTTATTTGGAAGAAAATGATCAGTGGAATGAAATAATTGAAATATGACAGAAGATATATTT--------------------------TTTAAAG----------------------------------------------------AAGGAAGCCTTTGTGCAGATCGCCAGATCCACAGGAGCACTACTCCAGAGCAGGAAGATGCCTTAATCCTAAATATACCCATTTGTGCTACATCAACTTACTGCTACAAAAGTGACTTCATTTTACTTTGGAAATAACACTTTTGCTGTTATGAGATGCTACA----GTATGAGCTATCAAGTCACATGTTAACATGGCATATGTATTTTTT------TGA-------CATTAGAGTTGTTTCTTAGTATCCATATAAATTTTCACTCCAGAA-ACAAGCTGAAAAGTTATCTTATGTGAAGTACATGTAGGGCGGTAAGGTGGCTGAAGGTGAATAATAATATTCATCTACTTTTGCTTGTACTGTATAAGGAAAAGGAAATAACTTTTTT------------TTAATTGGGTGTTTGCTAACTTATAATTACTGTTTTATACTTTTCAACATTTATAATAAAG--TTTTTTATTGTTAACTATAAAA a score=22756 s hg19.chr6_ssto_hap7 2683448 693 + 4928567 tCAGCATGGGGAAGGGGGTCATGGTAGACATGGGGGAGGGCTGGTCTCTCCACCTTCTCACATTAGGCTAACAGGGACGCAGACACATTCAGATGCCTTT-GCAGAAAGAGACACCAGAGGCTCTTGAAGTCACAAAGG-GGAGGCATGAAGAAATACTGCATC--TCAGTCCCTCACAAGACAGCTGCCTCAGGCTACAGAAAACAATAGTCATGAACAAATTCAGGTCAGTGGCCATAAAGCGTAACACTCTGAACTCCCCACTACACACTCAAAGTGT----CCCAAAGAATCACCGTAATCCAGTCTTGTCCCCTGTACCCCATCC---CCCTTCCACATAAGGCCCTCCAGGACGCCACCTTTACAAGCTGTGAGAGACACATCACAGCCCTGGTCACTGTCACTGCCTGGGGTAGAACAAAAACAGGACCTGGTCAGAGCCTGCAGGAGATGTGG-GAGAGGAGGAAT--TATGGCATAGGTGAGCTCCTCCA-----------------CATCC----GTCTC--------------CCATAGTTACACACAGCC--TGAGCA----CCTCCTTCTCTGCCTCTGGGAAGAAATCATCCTGTGAGGGGCTAGGGAGGAGACAGGGCCATGAGGTCCTAGAGGAACCCCCTAGTCTTGGACCCCAGAGAAGTTTCCAAAACTG-TGACTGCAGACCCAGGG------CAGGAAACATGAGGAAAGCAGGTGTGAGG--ACTGAACCAACTG s canFam2.chr18 14692297 727 - 58872314 TCAGTTGGGGGAAGGGA--CATGATGAGTA--GAGGTGGGCCAATTTCCCCACCTGCTCACATTATGCTAATAGGAACAGAGTCACTTTCAGACACCATTAGCAGATGGAGATATCCGGGGCTCTTGAAGTCAAAAAAGTGGGAGTGTGAACAAATCTTGCATCACTCAGAGTCCCACAAGGCAGCTGGCTTGCTCTGTGAAAGAAAATAGTCATGAACAAATTCAGGTCAAT---CAT-----GTTAAGTGCTGACATCTCC---ACATGCTTATAATGTTCCACTCAAAGAATCCTCATAACCCAGTCATGTCCCCTCTGCCCCAACCACTCCCCTTGGCTTCAGGCCCTCCAGGGTCTCACCATTAGGAGCCATGACAGACATCTGAGAGTCCTG------AGCACTGCCTACGGTAGAAC---AACAGGATGTGGTCAAAACCCACAAGAGATGAGACTAAAGGAGGAGCTATATAGGGTGGCTGAGTTCCCCCATGGGGTCCTATCTATACTATCCCAGGGTCTCAAGGATCACTCCCTCCATACTTATTTTCAGCCTGTGAGTAGCTCCCTCCTTTTCTGCCTGTGGGAAGAAAATATCATGTCAGAGGCTAAGGAG-----AAGGCTATGGTATCC-AAAGGAATACCCTAGTCCTGTACCAAAATGCAGTTTCCAGGACTGTTAACTGAAGACTCACGGCTGTATCGGAGACCACAGAGAAAGTATATGTAGGGGCACTGGGCCAACTG a score=17662 s hg19.chr6_ssto_hap7 2684145 672 + 4928567 GTATGTAAAGACATACTTGGTACATAGTAGATACAAAGTTAGCTTTGGTCTTTGGTGAATTCATGAA-TATGATTGTATTAAAATGTAATTGCATTGCATAAAAATTATAAAATGAAGAATACCAAAAAATTAGGAAAGATTTTACCTTATACAAGGAGTGTACATTTCAATTCACTAGTTTATTC---CAATAGAGAAAATGTTATATGCTTATCTGTTGGCCTAtgtatgaattttctgttactgcataacatatt-accactaactcactggctctacacagcacccatttatttctctacatttcctta-atgagaaatccaggcctggtg-tgaatgattctcagttcaggatttcacgaagctgtgtcctcatcttgaggctggggtcctccttcaagcttatacagagcttggtggcagaattcagtttcaggcagttgtgagattgtagtccttgttcctgggca-gctgtcaggtggaggtggggtggagctgctctcaattcctggagcccgccatatcctttgccacatggccccttcattttcaaagctcacagcggaggaagcccctcacgttgaatctcgctcacactgtgaatctctttgctgaagaagaaataagttgttttaagagctcacctgattaggacagtccaaggcaggataatcat s canFam2.chr12 71531152 641 - 75515492 gtgtagaaagccattcttggtgcagagtaggcactaaattaa--ttgttgttgaatgaatgaatGAAATATGACT--ATTAGATTTTAATCCCATCACTTAAAAATCACAAAATGGAAAATACATGAAAAAT----GAGATTTTATTTCATGCAACTAGTGTGCACGACGATTCATACATTCATTCATTCCACTGGGAAAATGTGATGTGCAT-----TGAGGCTAtgtggtggttttctattgctgcataacaaattaaccacaaacatagtgacttacaaccacacccatgtgtatgtgcacagttctgtaggtcagcagtccaggagtgatgctgaggggtcttctcctcagcatgtcac-agacagtgtttgcaactagagcttgaggtccccctacaagcttgtacagatc-tgttagcagaattccagttcttgtagttggaggtcggcagtctccacttcctggcacgctgtca-------gtgggat---gctgttcttagctcctgtggccaccagcattgcttgccgggagccccttccatcataaagcct--------------ccactcacaatgaatcctgctcactcttccagtcccttcactcaggaagcaccctgtgctattaagggctcacctgattaggtcaggactacttgggataatcct a score=19442 s hg19.chr6_ssto_hap7 2684817 495 + 4928567 ggccttaaagtcaactgatttgggaccttgcttatatctgcagaatcccttcacagcggcacctacagtagtg-ttgattgagtaactgg-ggaaggtgaatcaccagggg-tggttatgtgggggccatcACTGAATCATCCTCGCATagccaggatcttccttttctgtttaattgggtcacagtaggaaactgaagttcaaataaatagattgttgtgaatgttaataaaatacatcctat----tgatacatggaaa---tactgaaatcttaaaaccaa---ataacactgaatatcttttagttaatttagagtaaataaaaattaaagtgtagtaattcattctctcttttgAAGCGCTA------ttgtctattgttgtataataaataacataaagtttgacaacccaaaacaacaaattcttatcatctcccacagtttccagtggtcaggaatctgggagagatt--tccttgagtgcttctggctcagagcctctcaccaggtt s canFam2.chr12 71532052 509 - 75515492 tgttttaaatgcagctgatct-gaaccttcactgcatatgcaaagtcctttcacgctagcacctggattagtgtttgatccaacaactggaagaatatgaataaccagaggttagttatg-gcaggccatcttagcatctgcctaGGACagcctgcttcttccttt--tgtttaattggtttaccgtcagaaatcaaactccaaataaatagattgttgtgaatggtaataatatgcattctgttcccttagacatagatattcttcttaaatcttaaaaccaatagatgatgtttaatatc--atagttaatttagagccaatcgaaattaaagtgcaatacttcattctcttctttgga-cTCtataatagttatgtactggtgcctaacaaattatccacagcatagcagctcagaacaacaaatatatattgtgtcccacagtttcccagggtcaggaatccaggagaggcttatacctgagtgcttctgtctcagggcctctctctgggtt a score=7206 s hg19.chr6_ssto_hap7 2689067 265 + 4928567 TGGCGGATGTCT--TGAATTTGGTG-------------------AATGCCTTTATATTG----------------------------------------------------------------------------------------------TTACAAAGTTTTT----AAAATCCCTttgttttacatgattttagacttcgtataaattgttttttgttgaatgtatcattctgtggcttgctttatcatttaatatggtttatgaggtgaacccacacccatagaaacagttactttgttttcagttctggatagtattcatgggaggaatatcccacaatttatctcttctgtccgt-gacctttagcttgtttctgtta s canFam2.chr12 3885420 376 + 75515492 TGGCGGATGTGTGTTGAATTTGGTGTATAGGTATGTTTTTTACTAAGACTTTCATTTTattttatttcttgaagttaactctatgcccaaagcagggctcaaactcatgagtctgagatcaagagttgcatgctctacccactAGACACCCCTTTACCAAGACTTTCTAAAAAATCCCtttatttggcatg-tttaagactttgtataaattgtttctctctgaatccatcattctgtagcttgctttttcggttaacattatatatgaaatgaatccatgtttatccaaatagttcatttatttttattatgagatgggatcca--------atatgctacaatttattccctctctccattgacctttagtttgtttctttct a score=8710 s hg19.chr6_ssto_hap7 2689341 297 + 4928567 ccacaatgaacatcctgggtcatctctctctggtcccctgtgtgagttcccc-aagatatggatgtaggaatgggattactgtgc--ttttaccatgtggtgttataggatgtcaaattgttctctgaagaggttgtatcaGct----------------------cccccctttaaaatcttctttgacattttacaggtcaagttctcttcctccccaactggctgctcctcctcagtcccccttcattggctccttttgctgtagatgctggagcactc------------tggggtg------------ttactaccttcctaatcactccggtgtcctcca s canFam2.chr12 3886000 311 + 75515492 ctatagtgaatgttctagggcttctctctttggttccttgtgtaagttcccctaggatatgtttataggagtggaattactgcacatctctaccacatgatgctg----------aattgttctctgaagtgattgcattgttttataGTACTCCTCCCCCTATTGCCCCCCTTTTAAAGCTTCTGTGACATTATATAGTTCTGGTTTTCTTT-------------------------GACGCCCTTTGCTGACTCTCTTTCCTCTAAATACTGGTGTGTTTAAGAACTGTATATGGGCTGCTTGCTCTGTTTTTACTGCCTTCTTAATCACTCTACTTTCATCTA a score=7463 s hg19.chr6_ssto_hap7 2689638 170 + 4928567 ctctcaggattttaaatatcatctagacacagatggctcccaaatatatatctctaCATATTTCTATAATCAAAAAAATAATGGTACCAaaacaggtactctgatatactg--cagatgggcctgcaaactggaaatgttttcaggaaaggcagtatggctatttctgtcca s canFam2.chr12 3886732 164 + 75515492 TTCCCAGGATTTTAAATATCATTTATACACAG------CCCGAA-ATATATATCTACATCTTATCATAGTTTAAGAAATAGCA-CACCCAAATAGGTGCTCAAATATATTGTGCAGATGGAATTGCAAACTGGTCATGTTTTTCTGAAAGGCAAAATGGCAATTTCTATCTA a score=780 s hg19.chr6_ssto_hap7 2689965 17 + 4928567 taatccaaatgtctgtc s canFam2.chr12 3886896 17 + 75515492 TAAATTAAATTTCTATC a score=11634 s hg19.chr6_ssto_hap7 2690130 397 + 4928567 AAACATTTAACACAAAAGAAGAAAGACATAGAAAACTCTTGATATTCCCTCATGAA--------------------------gaaataaagcaaggtgtagaataacatatagagtctgctaaaatttgtgtgaaaagggacaaaggatatatatgtacacatttatatttgcttgcatatgcataaaatatatttggaagaataagcaagaagttaatatccttggttgcctgttggggatgagACAGGG-TAAGAGAGAGACATTTTACCTTTTGAATATTTTGAA--TTTTGAATTTTGAACTATATCAAGAAATAAAAGA------TAATTCCTAAGGAGACCAAACAAACCCCCAAAAAATTCAAAATGAAAAACTTTTTAAAAACTAATGGAA-------------------------TTTTTTAACCTTTATCGaaataaaatttaaaaa s canFam2.chr12 3887111 438 + 75515492 AAATCTTTAAAATAAAAaaa-aaagacacaggaagctcttaatacatctttatgggagggtgtccatggtatgtggttaagtgtaagaaagtaaggtgtaggaaagcatat-------gtcaaaatttgtgt-aaaaggaaaaaaatatat-tatatattattacttgtttgcttgcataagcataaaatgtctttggaaaaataagcaagggactaatattagtggttacctgttagggatgggataggggtgagaaagaGACTTTTTATCTTTT--------TGAAGCTTTTGaattaagatataaaacaaaaaacaaaacaaaaacataatttcaaaggagacaaaaataaaatt-gaaaaactcaaagtaaataaatgaaaagaaaGTGACAGGAATAATTCCTCTACTCTTTTTTTTTTTTTCTCTACTCTTATTAAGATAAAAAATTGGGg a score=2071 s hg19.chr6_ssto_hap7 2690527 47 + 4928567 ttttctaaatattatGTTATTCCTTTAACAAGGAGGTTTACTGCCAT s canFam2.chr12 3887729 46 + 75515492 TTGTCTGAAAAT-GTATTGGTTCTTGAACAAGGATGTTTACTACCAt a score=2039 s hg19.chr6_ssto_hap7 2690575 32 + 4928567 TTAATTCAGTACGTTGTTTTCTTTTTAATTGC s canFam2.chr12 3887970 32 + 75515492 TTAACTTAGCAGGTTATTTTCTTTTTAAATGC a score=13381 s hg19.chr6_ssto_hap7 2690607 638 + 4928567 ATG----ATCTTTCTT--TACATCTGTCTTTTTTCCATTACAAGGTAAAATAACAGCATGATTAATTAA---ATGCAGTTTGTTTGGTGAAGGAAATTTTGTTCAAATCTTGGTCTAAGTGGGAAAG-------------------GGATTCTAGGGGATCCAGTACAGCAGTTATGGGTTTCAGTATGCTCACGACGCCCTCCAGTGTTTGTGTGGGCTCATGG----ATGCCATATCTAGAAAACACTGGAATTC----TCAAGCACACGTGACTGAAGCCATTTGCCAAATGTTCAAGGTCCT-ATTAATGGCCCATCTGAGTAC-------------------TTGTCATACGCGGTCACCCTATCTTTGGATCAGAAGGTACACTCAGAGCTCCTAGTGTCACATCCCAGGCCCAACCTGCTGAGATTAGTCGAGGAAGGTCTGGAGGTCAGTG--------------------------------------------------------------------------------------TCGTGAGGGGTGGGAAGAC-TGAGGGTGTGGGGGCCAGT-TGTGGAGTGGCGGGAGCCCCAGGTGCTGTATG--AAGCCGAGCCTCTGGATCACCCTGTGA---CCCCACATTTGGTCCCTTCCTGGGTGTCT-TCCATTCCCAGGACTCCCAGGAAATA---AAATCCTGCAAGATTGGGGTGGGGAGCTG---TCCAGGGTGGGTCAGGTGTGGTCTCACTGATCCTACACCTCTGCCTCCCAGCCC s canFam2.chr12 3888180 780 + 75515492 ATGCCGTATCTTTCTTGATATATTTGTTTTTCATTCATTAAGAGGTAGAATAAGGGCACGATTATTCAACAAATGCAATTCGTTTGGTCAAGGACATC--GACCAAGTCTTG-TTTCAGCAGGAAAGCCCCATCTACAAGACTTTTTGGTTGTTGATGGTTAGACACAATCTTTGTAGCTTT-AGAAGTCTCAGGACGCCCTCTAGTGTCCATATGGATTCAAAGTCCAATGATTCAAAAATAAATCACTGGTGCTTCTAGTCTAGGACATCTTATTGTAGCCATTTGCCAAAATAGCAGAACCATCATTATTCGCCCATTGTGTTATCCTGTTAGTTGGCTTGTCATTGTCAGGCTATGCTACCCTATCTTTGGATTAGAAAGTGTGCTCAGAGTTCCTCAGGTGGCATCATAGGTCCCAATGGCTGAGC---------AAGGGCCTGGAGGTCAATGCTGTGAGTTGACTTAAGTCAACTTATAAGTTCACTTGTCCTGGGTGTCCATTGGGTTTCTACTCATACCTCAAATGCAGTTAACATTTGTGAGGGGTGGAAGGGCCTGAGGGGACAGGAACGAATCTTTGGAGGCACAGTTGCCCCAGGTGCTGTGTGTAAAGTGCTGCTTCTGGATCACCCTCTCAGACCTCCATGTCTGGTGCCTGCCTGGATGTCTGCCCATTGCTGGAACTCAAGGCAATCAGACAAACACGGGATCACTGGGGTTGG-AGCAGGGTTCCAGGATAAGCCAGGTGTGGTTCAGTTTGTCCTATACTGCCGCCTTATAGTCC a score=8867 s hg19.chr6_ssto_hap7 2691248 153 + 4928567 CCCAGCCCTCTTCTGATATTAGAAACCAACACAGATTGCCTTAGGGTGgtggttctcaaagtgtggtcctgggggaagcagcattggcatcacctgggaactt---agatatgcaatcttcagggcctggcctggacctactgtatcagaaactct s canFam2.chr12 3889172 156 + 75515492 TCCAGGCCTCTTCTGATATTAGAAACCAAACCAGACTGACTTGGGGCTAtggttctcaaagtgtggacctgagacaagctgcattggcaacacctgggaacttgttagaaatgcaaatctcaggctctacccagaacctactgaatgagaaattcc a score=11826 s hg19.chr6_ssto_hap7 2691539 314 + 4928567 ctGTTTCAAGTCTCAATATTGAGTAGCTGTGACTTCTGGATAGTCAGGTGTCAGACACCCTTTCTTGCCAGGAGGCACCAGGCTCCTCAATCAGCTTAGTCTCATTCTTGGCCTGGCCCAGGGAAAGATGTTCACTTCCTGGATTCTGAGCAAAGCTCTCCTACCCTGGGTGCCTGTGGGGCTCCCACTTACACCACAAAACAAAGCTCAAATA--ATATTATTTTCTTTTATGAGATTTTTGGTATTCCTTCATTAGTCAGAGCTGAAGATCTACATATATGTCTACCAAGCAAGTGTGCATGTCCCACTAGCCA s canFam2.chr12 3889838 288 + 75515492 CTCTCTCAAGTTTCAATATGCAGTAGCTGTGACTCC-GGATAGTCAGAGGTCAGG-ACACTTTCTTACCAGGAAGCACCTGGCACCTGAATT---------------TAGGCCTGGCCTGGGCAAAGACACTCATGTCCTGGATTCTGAGCCATGTTCACTTGTCCTGGGTGTCCACTGGGTTTCTACTCATACCTCAAA------TGCAGTTAACATGTTTGTCTCTTTTATGAGG-TTTTGGGACTCC----TTAGTCAGAGCTGATGGGCTACATATATATCCAAAAAGCCCATGTGCAGCTTGCACTTATCA a score=4458 s hg19.chr6_ssto_hap7 2705985 304 + 4928567 ACCTCCTCCCTGCC----CATCTCAGGGCCCGCTG---AGTCCTTTTGCCCTCCC-----AGCTCCC-TGCTACCCCTTCCTGTGTGCTGTTCTCTGATCCATTTCTAGGGTGTCCTCTGCCCTCATCCCCTGTCCCCGCCACCGAAGGTCCCTCCTGCACCCCTTATGGGCCTTTCCTACAAGCAGCCTTCACCCAGTGCTGCCCCTATGCCTCCCCGTTCCCAAATGTCCCTGACTCTAACTTTCTGGTGCTGCCTTTTATCCGGGGGGGTCTTCCCTCCATCCCACTCCCCTCCAGACCCC--CAAGGGGAACCCT s canFam2.chr12 3964876 276 + 75515492 ACCTGTTGCCTGCCACTGCAGCTCAAGCCCCCTTCTCCAATCTCTTCGCCTCCCCTCAGAGTCTCCCATGCCCCCACCCTCTGTCTGCCATTCTCT------TTCCT------TTCTCTGATCCCTTTCTGGGTCCTCACCAC-------------TTTCCATCTCATGGCCACTGCCCACAAAGAGGCTTC---------TGGCC-TAGATCTCCCTCCCCCCAACTTTTCC-AACTCTATCTTCCTGAGATGACCTTTTGTCTAGAAG-------TCTCCCTTCCACTGCTCTCCTGCCATCAGCAAGGGGAGCCCT a score=8730 s hg19.chr6_ssto_hap7 2706327 482 + 4928567 CAGCGCAGATGCCCCCTCCCC----------TCCAGTGCAGATGCCTGTTCTGGACCCTGCCTCATTGTGG-----------------CCCCTTCCCCACTCCTTCATCCTCAGCCTCACCCTCTTGAGGACCCCACCCTCCAGCCCACAGGTGCTGGAC--CATCCCTCCCTGGTCCCTCCGCCCCTCTCCACCTTGGGACCTTG--TGCTGCTCCTATCTCTTGCCCAGCTGCCTTGGGCCCTCAGCACGTTCTCATCTTTCAGTGGGAAAGTGGGAG------TGCTGGAGCATATGACAGT--GCTGAGCATCTTTCCCAAGCCCCACCCTCCCCCAGAGCACCCTCCCCTCCTGTCCTCACCCTAC-CCCAAGTTCTCCCACAGTCACTCC-TGCCCCATGCTCA------------TGCCGCCCTCCAGTTCTTGCTCTGCCCATCTCCCCTCCCCAACCCAGACCTAAAACAGGCTGTTGGGCCAAC---------TGTTCCTTGACCTTCCTTCTTTTCTTTTGGTTCCTTGACCC s canFam2.chr12 3965190 496 + 75515492 CAGTTTTGGTGCCCCCTCCTCCTCCCTCCCTTCCAGTGCAGGCACCTGCCCTTGGCCCTCCTTCATCCTGGGCCAGCACCTAGCACCACTCTGTCCCCACTCCTTCATCCT-ACCCTCACCCTCTTGTGGCCTCCACT-----GTCCCTGTGGGCTGGACTCCAGACCTCCCTGATCCCTCTGTACCCTTCCCCCAGGGCCCCTTGCCTGCTG----------GCGCCCCCCTGCCT--GGCCCTCACCAAGCTCTCCTCTCTCA-----------GGAGCTCCTCCGATGGGGCCCTTG-CAGTCAGCAGTGCCTCCT-------CCCTGCTCTCAGCCCATGCCTGCTCCTCTCTTG---TCAGCCTGTAATTAAGTTCTTTCAGGGTCACCCAGTCCCCCATTCCCAGAGCCTCAGCACTAGTGTCCCCTGATC----CTCTTGCCATTCCCTCTCCCCTG--TGGACCAGAAAGCTACTCCAGGTCCAACCTCCCAGATTAATCCTCGGCCCTCATCC--CCCCTTTGGTTTCTTGACCC a score=77745 s hg19.chr6_ssto_hap7 2711463 3080 + 4928567 CCCAGTGGACACTAGCTGTTCCATCCAATTGCTGTCCTGGGGCCTTGTCATGCTACTCTTCCACTTTGAACCCAAGCCCACACCGTTCGTTGCTCCCCTCT-GGGATACTGACCCCACTATAAACTTCTCTGGGGCTACAA--CCTTCCTAC------CCTTTGTGCCTCATGACCACCCCCTCCCTTGTCCCCGCCATGCCCATGATGAGTCTCTTCTCGAGGCAGCTCCCCTTG--CCTCCATCTCACCCTCAGCCT-ATGCACCACAGCCACACTGGACATGGGTCCCTCTGAGCCTGAGTCCCTTCCCATTCCCACCATCCCCTCTGGCAAGACCTTCCTTCCACCA---CCTTCATGCTCCTCCCTTGCCCCT-GCAGGGCAGCCTCTCCCCTTGGCC-----CCTATTCC-CTTAGGGGGCTTGTGGCCACCCAGTCCTTGCACCTGGCCTACAAGTTTG-CCATCTTCATTCCCCCTTCTTCTGTTCATCAGCCCCCTCCTCTATCCTCCCACCCTCACAGTTTTCTTTGTATATGAAATCCTCGTTCTTGTCCCTTTGCCCGTGTGCATTTCCTGC-----------CCCAGGAAGGTTGGGACAGCAGACCTGTGT-GTTAAACATCAAT-GTGAAGTTACTTCCAGGAAGAAGTTTCACCTGTGATTTCCTCT-TCCCCAGAGCCCCACAGTCTTCGTTATAACCTCACGGTGCTGTCCTGGGATGGATCTGTGCAGTCAGGGTTTCTTGCTGAGGTACATCTGGATGGTCAGCCCTTCCTGCGCTATGACAGGCAGAAATGCAGGGCAAAGCCCCAGGGACAGTGGGCAGAAGATGTCCTGGGAAATAAGACATGGGACAGAGAGACCAGGGACTTGACAGGGAACGGAAAGGACCTCAGGATGACCCTGGCTCATATCAAGGACCAGAAAG-------AAGGTGAGAGTCGG-CAGGGGCAAGAGTGACTGGAGAGGCCTTTTCCAGAAAAGTTAGGGGCAGAGAGCAGGGACCTGTCTCTTCCCACTGGATCTGGCTCAGGCTGGGGGTGAGGAATGGGGGTCAGTGGAACTCAGCAGGGAGGTGAGCCGGCACTCAGCCCACACAGGGAGG-CATGGAGGAGGGCCAGGGAGGCATACCCCCTGGGCTGAGTTCCTCACTTGGGTGGAAAGGT--GATGGGTTCGGGAATGGAGAAGTCACTGCTGGGTGGGGGCAGGCTTGCATTCCCTCCAGGAGATTAGGGTCTGTGAGATCCATGAAGACAACAGCACCAGGAGCTCCCAGCATTTCTACTACGATGGGGAGCTCTTCCTCTCCCAA-AACCTGGAGACTGAGGAATGGACAGTGCCCCAGTCCTCCAGAGCTCAGACCTTGGCCATGAACGTCAGGAATTTCTTGAAGGAAGATGCCATGAAGACCAAGACACACTATCACGCTATGCATGCAGACTGCCTGCAGGAACTACGGCGATATCTAGAATCCGGCGTAGTCCTGAGGAGAACAGGTACCGACGCTGGCCAGGGGCTCTCCTCTCCCTCCAATTCTGCTAGAGTTGCCTCACCTCCCAGATGTGTCCAGGGAAACCCTCCCTGTGCTATGG-ATGAAGGCATTTCCTGTTGGCACATCGTGTCCTGATTTTCCTCTATTGTTAGAGCCACTGGATAAAGACAGAGGGTCAGGG-----ACTGGACCATCCAGTGTTG-TAATCAGGGCAAGTAGAGGACCCTCCGACAGAATCCTGAGCCTGTG---GTGGGTGTCAGGCAGGAGAGGAAGCCTTCAGGGCCAGGGCTGCCCCCTCTGCCTCCCAGCCTGCCCATCCTGGAGAGTTCCCTCCTGG--CCCCACAACCCAGGAGTCCACCCCTGACATCCCCCTCCTCAGCATCAATGTGGGGATCCCAGAGCCTGAGGCCACAGTCCCAAGGCCCATCCTCCTGCCAGCCTGGAAGAACTGGGCCCCAGAGTG-AGGACAGACTTG---CAGGTCAGGGGTCCCGGAGGGCTTCAGCCAGAGTGAGAACAGTGAAGAGAAACAGCCCTGTTCCTCTCCCCTCCTTAGAGGGGAGCAGGGCT------------TCACTGGCTCTGCCCTTTCTTCTCCAGTGCCCCCCATGGTGAATGTCACCCGCAGCGAGGCCTCAGAGGGCAACATCACCGTGACATGCAGGGCTTCCAGCTTCTATCCCCGGAATATCATACTGACCTGGCGTCAGGATGGGGTATCTTTGAGCCACGACACCCAGCAGTGGGGGGATGTCCTGCCTGATGGGAATGGAACCTACCAGACCTGGGTGGCCACCAGGATTTGCCGAGGAGAGGAGCAGAGGTTCACCTGCTACATGGAACACAGCGGGAATCACAGCACTCACCCTGTGCCCTCTGGTGAGCCTAGGGTGACCC-TGGAGAGGGTC-------------------AGGCCAGGGTAGGGACAGCAGGGATGGCTGTGGCTCTCT-----GCCCAGTGTATAACAAGTCCCTTTTTTTCAGGGAAAGTGCTGGTGCTTCAGAGT-CATTGGCAGACATTCCATGTTTCTGCTGTTGCTGCTGGCTGCTGCTATTTTTGTTATTATTATTTTCTATGTCCGTTGTTGTAAGAAGAAAACATCAGCTGCA-----GAGGGTCCAGGTGAGAAAAGCGGGCAGTTTCTGGAGATGGTAAGGCCCCTGTCTGGGCAGTAGGGTCCCCTCATTGCTC---CTGCAAAGATAGGCATGTTGGTGACAAGGCTTCCGTAACAGGGGATGAAAGTTGGGGAATTTGGGAAGGGAATGGGGGCAGCATCTCCATCTACACCCATAAGTGCTGCCCAAG----CAAGGGTC---AAACGCCCAGCTGTGGCATCCTCCTGCTGCAGGTGAGGAGTGGGCAGCAGGGAGGGCTGCGGCG-CCTGCTCTGTCCCCATCCCGGTCTCTGTGT-CTCTTGAACTCACTAGGGC-----GCATCCAGGTGGGGTGAGCTGGGAATCACGTGCTGAATGCTAAGGGCCTGGATGATCACGGCCTCAGAG-GGAGCAAATAGTAAAGGCAGCTGTGATCTGGGGAGG--GCCAGAAACTGGAGAGGAATCT-GAGGAGAGGCGGTGCCCCTATTCCCTTCCTCTCTGCATCCCCCTCCCCTGTTTCTCCAGCCATCGGGGCGGA---------------CACCG s canFam2.chr12 3965949 2980 + 75515492 CCCAGAGGACACTGGCAGGTCCAACCCATCCCCA-CCTGGGATCACAGCCTGCCACTCTTCCACTT-GGGCCTAAGCCTACACC-----TTCCTCACCCCTAGGGGCACTGACAC-ACCCTGAGCTCCCCTGTGGTCACCATACCCTCCAACATACAGCCCTTCTGCTTCACTGCCCTTTCTACCCTTGACCCCATCTCTTCCCTGATGAACTTTCACCACAGGCAGCAGCCCCTGACTCTCCACTCCACCATAATCCCCGAGCACCGTGGCATCTCTGGCCATGGATCACTC--AACCTTGGGCTCCCCACTGCCCCTGCCTCCCTGCTCACAAGGCCTCTCCTTCCCCATGGCCTTCTTGCCCTCCCCCTGCTTCTTGCAGGCCAGTATCTCCCCTTGACCTCTTACCTACACCACCCACAGGACCCCATGCCTTCCTCTCCTGGCTCCCATGCTGCATGTCTGTCCATCTCCACTTCTCTTTGCCAT-TCCTTCTTCCCTCTCCT---TCCTGCCCCCTTTCCTCTCTTCTT-GTATG-GAAAGCCTCCTTCTTGTCC-TTTGTACAGGTGCATTTTCTGCATGCTCAATATTTCAGGCAGTTCAGGACAGCAGAGCTTTTCAGAGAAGGATCTGTTATGTTGTTCCTTCCAGGTTA---CTTCATCTGTGATCTACTCCCTCCCCAGATTCCCGCAGTCTTTCTTATAACCTCACAGTGGAGTCC-AAGATGGATGTGTATCG--GAGATTTTTCACTGAGGGACACTTGGATGATCAAGCCTTCCTCCACCTTGACATG------------GTAGAGCCACAGGGACTGTGGGCAGAAGCAGTCCCGGGTC-TGAGACGCAGAACACAGAGGCCAAGGACTTGAGAGAGACTGGAAACAGCCTCAGAATGAGTCTGACAGGTGTCCTGGCCCTGTAGGCACAGGCAAGGTGAGAGTGGGGTCAGAGCAAGAGTGAT--GGTAGGACTTTCCCAGGGAAGTTCAGGGTAGAGAGCAGAGCCCTGTCTCTTTCC--TGGATTTGGCTGGGGGTGGGGGTGAGGGCTAAAGGTCTGTGGACTTCAGCCT--AAGGGGGCCATTACTGAGCCAGCACAGAGAAGACATAGAGGAGAGGAAGGGGGGC----TCTCTGGCTGGAGTTTGTCACTGGGGCAGGGAAGTCAGAGGGACACAGGGTGGGAGAAGTCACTGCTGGCTGGAGGCAGGCTTGCATTCCCTGCAGGAGATATGGGGCT-CAAGATCTCAGAAGACGACAGCACCAGGAGCTTTGGGCATTTCTGCCATGATGGGGAGCTCTTCCTCTCTTTATGACCTGAAGACCCGTGGATGGACTGTTCCCCCATCCTC---AGCT-GGACCGCGATCATGGAAATCAAGAAGTCCTGG------GATGCAA----------------------------------------CCTGAATGGGCT--------------------------TCTTGGACAGGTCAGGCATGACCCCCGGGGAAGGAGCCTTCTTCTTCCCCAGACTCACTGA----GCCTCCCCCAGCAG-------------------TCCTGTCCTATGGGATGCGCACATGTTCTGTTGGCACATTGTATTGAGATCCGCCTGTCCTGTTACAGTCTCTAGAGACACCGAGCAGGTTGGGATGGAAATGAAATCTTCCAGTGTTAATAGTCCAGG-GAGCAGTGGGCTTTCCTACGTAGAACTCAACCAGAGAAGGCAGGTGTCAG-CAAGAGAGGAAGTT------------------------------CAGTCTCCCTGTCACAAAGAGTTTCCTTTAGAGTCCCCTCAGCCGAAGAGCCCACCCTCCATG-CCCCCTCGTCAGCAGTAACACATGCATCCAAGAG------ATCCCATTCCT--GGCCCATCCTCCTGCCCGGGCTAAGGACCTGGGTCCCAGGGTGCAGAACAGACTTGGAGCAGGTCTGGGGTCAGTGAGGGCTTCAGCCAGAGGTGGAA-AGTGG-GAGAAGCAGCCTT-TCTCTCTGTCTTTTGTGGAGGTGAGCAGGGCTCAGCCATGGACCTCACCAGCTCTGTGCCTTCTTCCTCAGTGCCCCCAACAGTGAACATGCTCTGCAGCCAGGCCTTGGAAGGCATGATCCCTCTGACATGCTGGGCTTTCAGTTTCTCTCCCAGGAATACCTCCCTGACCTGGCTTCAGGATGGGA-ACCCCTGAGCAAAGATTACCAGTAGTGTCGGGA-----------ATGGGAC--GGACCTACTGGACAGGAGGGGCCATAAAGTCT---CAAGGAGAGGAGCAAAGGTTCACCTGCCAGATGGAAGACACAAGGAACCACACTGTACACTGTGTGCCCTCAAGTGAGCCTGGGGTGATCCGTGGAGGGGGTTCTGACCCTGGTTGAGTTAGGAACCAGGGTCGGGAGAGGAGAGCAGGCC-TGTATCCTTGAGGAGCCCAGGTCACTATAAGGCCC--TTTTCCAGGAAAGGCCCCAGTGCCCCGGAGTGGATGGACAG-----CTACCTGCCTGCTGCTGCT----CCTGCTGATTTTCTTACTGTCATCATTGCACGTGTTTTTTTCTCCAAGAACAAGATACCACCAGCAGCTGTGGAAGCCCAGATAAGAATTCTGGGCAGTGGGTAGGGTTGGAGGGGCTCT--CCTAGGACGTGGGG-CACTTTATGTCTCCCTCTGCACAGATCAGAGGG--GATGA-AAAGCTTCTGTAACAGGAGCTGGAAGTCAGAGAGCT--GAGAGGGGCTGGGAGCCACATCTGCATCTACATCCTTA------GCCCTGGGTCCCCAGGGCCCTTGAGTGGTGAG-TGTGGCCTCTCCTTGCTCTGGGTGAGGATTGGGCAGTAGGGA---CTGGGGCTCCCTGCTCTGAGTTTGTCCCTACCTCTCTCTACTCTCAGGCTCGGCAGGACTCTCTGTCTGGAGGTAATGTG---TGGGGACCATGTGTTGACTGGGGAGGGCCCAGGTGATCGTGGGACCAGAGAGGCACAAGCAGTAAAGG-GTCCAAGACCTAGTGGGGAAGTTTAACACTGGGCAAGAATCCAGACCAGAAGTAATGATTCTATTTCCTTCCTGTCCACA---CCTGTTCCAATATCTTCGGCCATCATGAGGAATCAAAGAAAAGGACTCACAG a score=15810 s hg19.chr6_ssto_hap7 2714543 490 + 4928567 AGAAAAAGACCTATGAGGCC--------CAGCCTGG-----------GGGCCCTGCCTGTGTAG-CCCTTTGGAGACCCCTTGTAACAGGGA------GGGTCCTGAGCACACATGGCCATCTCT-GTCCACTTTGCAGCTCCCCATGCACCTCCTCCAGGAGCTTTCT-TGGGGTTGTCGTGTCCTCTGCACCATTCGAGGCCCTACTCTTTCCAGGTTCCCACGGCCTG-------GCCTCCCTGAG-TTTCTTGCAGATGACATGGATGAGT-------AGA-----------TAAGCAGATGTCCCTGGGCCATTTGAGGAGTGGGGCCCAGCCCCTCATCAGGGCAGCTGTGGTCCCTGTTTTCATCCTACCTCCGAGTGTTTTCTTCTCCAGTCCCTGAGGGACACAGTC----------CTCAGGGCCCATGTTTTTGGGGATTTAATCTGTGCTC-TGTGGCCTCACCTTGCCCTCCCTGAGCCAATTTCCCTTTCTAAAGGTGGTCACTGCCTGGTAAGTTTGGAGTAAGGGACGGTCAGAATCAT s canFam2.chr12 3969147 540 + 75515492 agaaaAGGACTCACAAGGCCCCATGTGGCAGCCAGGAGAGCATGCCAGAGTCCTGCCTGTGACGTCCCCTTGGGAAGTTCCACTCACAAGGCATAGATGCATCCTGAGCATAGATGGTCACCTTTGGTCCACTTTGTAGCCCCTCGAATGGCTCCTCCAGGACCTGTCTCCCGAGTTGT----TCCACTGGGTCACTCCCACCTGTGCTCTTTCCTGGTTCCCATCATATGCCCCCATGCTTCCTGGAGTTTTCTTGTGGATCATATGCAAGAGTCTCAGGGAGACTCTGGGGGTGTGAGCAGATAACCCTTGATCATTTGGGTAGAGAGGGTCAGTCCATTCTCAGGGCTGCTGTGGCCACTGCTTTTATCCTGCCTCCCTGATGTGTCCTGTCCAGGCCCTCAGGG-CACAGTCTAAGAAACTACTTAGGGCA---------GGGCATTCTGTCTGTACCCTTGTGGCCTCACTCTGCCCTCCCTGAGCCGG-TTCCCTTTCTTGTGCTGCTCACTGCCCTGTAGATTTGGAGGAAGGGATGGTCAGAATGAT a score=4375 s hg19.chr6_ssto_hap7 2715033 161 + 4928567 TTCCCCTACAGTCAGGTTGTTTGATGGGGGATGAAAAGAGACAGCAGGAAGTTTTGTGTTTCTGCAAAGACAGAAGCAGTTCAGGCGACAGTAAGAGGCTGGGGTGTCCAGGAGGATGTGTCTGGCAGTAGGGTC-------GCTGG------------------------TTTCTCATCCTTGAACCTAAT s canFam2.chr12 3969842 191 + 75515492 TTTCTGTGTAATCAGGCTGGTTGAGGGGAGGTGAAAACAGAAAG-ATGGAGTTTTGTGTTTGGGCAAAAAACAAGGTGATGCATGGGACAGGGAAAGAATGGGGTGTGTGGGGCCTGGGGTCCTTCAGTTGATTCTACCACTGCTGGGTGACCATCATGGCAGGCATCGGATTTCTCACTCTGGAACCTAAT a score=30092 s hg19.chr6_ssto_hap7 2715199 1424 + 4928567 TGTCAATCGGCCCCTCAGGCCTGAGCAGA-TGGGAAGGTTTGTCCCCTGCCCTGCAGCAAGAGGGCCCTGTCCAGGAGGCACCCACAAC-AGGGGCAGTGCAGGTCTGTGGTCACTCCTGCTCTCACCTGTGGCGTCTCCCGTAGAGGGATTGTCAGTTCTGGTTCCCTGTGGGCAGGAATGGTTTCCTCATAGGTCACTGGAGTTTTGGCCAGGAAAAGAGTATGAAGTTCATGTGCCAGTTTCTCAAAATTCCTGCTTTCAATGTTGATGTCCAGTAAAGATATTCGTAATTTCAGCTCTATAATCTTAATAGGATTTCCTCTAATATTGTGA-AGCATATTATATGAAACAGGAACACAAATTTCTCAAAATTCCTGCGATGTCCAATAAAGATTTTCATAATTTCAGCTCTGCAATCTTAATAGGATTTCCTAATACTGTAAAGCATATTAAATGAAACAGGAACTCAAATTTGGAGCCCCCTCTCCAGGA-GGTTCTGTGTG------GAGATGGTGGCTGTGGCAGTGGCAGTTCCCAGGTGCAGAGGGTGGGCAGAGGCAGCCTCAGGCTAAGGG--------GTCTCCCCTACTCCACATGGAGAAAATCCCTTGTAGGTTGCAAGGGCAGTGGCCGGGTGGAATCCCTGCTAGGGACAGAGCAGGAAGG-CCTCGCAGCCTCA-CCAAGCAGCAGCCCTGGGGTGGAGCTGCGTTTCCAGGGTTAAGCGGACCAGGCAGGAGTAGCGGTTACTCAAGAGCAGGTCACAGGCTTGGGTT---GTGAGGGTCAGGAG--AGGCCAGGCCTCCTCGAGCAAGGTGGGGGTCCCAGGGTCAGGTCAGGTGCAGATCCTGTGGCAGCCACGTCTTTCCATGCTGGGCCTGCTGGGCCCCCCAGGCTTCCTGATGGGGTCCCCAGTTAGGAGCTGCCTGCTCAGGGCT-GGGAGGGGAGGAGCACTGAGCTGCAGATAGAGGGCAGAGCCCACAGTGGGCAGGGCCTGCCCTGGTGTGTAGGTGCCTCTGCAGGAGAGGAGGGCCTGG------------------------------------GGACTGAGAGCAAGGGTCA---GGGCCTCTCTTTGGGGAGGCCT-CTCACTGTAACAGGACTGGTCAGGCCTGAGAGGAGGGCACTGGGTTCC--CTCTTGGGTCTTGTCCTTTAGTCTTGGGGCCCTTTCCCTC-CCTGCACGATGAGTGGTGGGCACAGGGCACGGGCTGATGTTGATGGAGT------GATGGGAGGGAACTGGCAGGGGCTGGGAAAAGCAAGGAGGGAGGAAGAAAAAAGTGGGGGCCTCATCTTCCCTCAGAGAAAGGGCAAATCTGGTTTTGGAGCAACTGAAGAGTGAAAAGTCCCCAGGGAAT---AAACACAACACTGCACCCAGTGGAGCATTTACCCATTTCCCTCTTTTCTCCAGAGCTCGTGAGCCTGCAGGTCCTGGATCAACACCCAGT s canFam2.chr12 3970224 1348 + 75515492 TATTAAGCTGGCCTTTGGTCTTAGGCAGACTGGGATGATTAGTCCCCTGCCCCACACTGAG-GGGCTGAGACCAGGTCACAACTAGAGCAAAGAGCCATGCAGGTCTGCAGATGTTCCTGTTGTTCTCTGGGGTGGCCCTCCCAGAGGGAACACCAGTTTTGATTCCTTA-GGGTAGAAATGATTGCCTCATATATCATTGAGGCATTTACTGGAGAAAGAATACAAAAGTCATGTGTCAATTTCTC-AAATTCCTGCTTTAAATTGTGATGTCCA--AAACAAATT----ATTTCAGAAAACGAATTTTAATAGGATTTCTTCAGATCCTGAGCTAGCTTAGTGCGTGAAATA--------------------------------------------------------------------TATCAGGAATTC-------------------------AACCAGAGG---------GAGGGCTCTTGTCTGGGAGGGTTCCATGTGGGAGGTGGGAGAGAGGTGGTGGCAATGGCAGTCTCAGGGTTCAGAAGATGGACAGA--TAGCCTCAGGCTTGGGGTCTCAAGAACCCCCTCTACCTCATTTAGAAGAAGACTGCAACAGGTTCTCCTTGCATTGCCTGGTTAG--TCCCTGCTAGGATTGGGGCCAGAAGGCCCTGGCAGCCTCAGCCAAGCTGCA--CTTGGGGAGGAGCTGTGATTCCAGGTGCAGGTGGGCCAAGAAGGAGCACCGAAGGC-CAAGTGCAGCCTGGCCGCCTGGGTCAGGGTGAGGGTGGAGGGCAAGGACAGGCCTCTGTGAGCATG--GGGTGCTCCTGAGTCAGGTCAAATACAGACCCCACTGTAGTCCACTTCTTCTAGACTGTGACTGGT-GGTCACCTGAGCACTCTGATGAGCCTTCCAGTTAGGAGCTGCTGGCTTAGGGCTAGGGAAGGAAGGAGGCTGAAGCTGCAGGT-GAGGTCAGTGCTTGTGGTTGAGAG-----GTCTCTGTGCTCAGGTGTTTATGC---AAATGAGAGCCTGACAGATAGAGAAGAAGCAGTGTTTGTAACCACTGTCTGGCCTGGAGGAACAGGCCACAGGGACATGTCTCTCAGGGGCCATGTTCTCTGTCAGTGGACAGTTGGGACC----AAGAAGGCATTGAGTTTCTGCTCCAGGGTGTTGTCC-TTGGTCCTGGGACCCTTTCCTGCTCCTGTCCAGTAGATGGTGGAGGCAGGGCC--AGCTAGTGATGCTGAGGCATCACAGTGGGGAGGGCA---GCAAGGGCTGGTAAAGG---GGTGAGAGAGAGATAACAGCAAGGG-TTTATCCTCCTTCAGAGAAA-GTCAGAGCTGAATTTGGAGTAACTGAAG------AAGTTCTGAGCAAGTGCAAAACAATATTTTGCACAAATTGGG--CTCTATGGGTTTCTCT-TTTCCCCAAAATCTTGGTAGCCTTCAAGACCTGGATCAACACCAGGT a score=13174 s hg19.chr6_ssto_hap7 2743171 605 + 4928567 CCTGAGTCCTGTGGATTCCAGGGCTGCTCAGGAGACGCCTCCATCCTGGC------GTGGATGACCTCAGGATC-AGCCCCGTCTGCCCCACTCAGCCCGCAGCCTGGTCCC--CGAAAGCGCTCAGTCAGAATCCGAGAGCAGTGTGGCGGCGCCCCCGTGTGGCCACAGGACTGAAGACAAAGGACCCCGCTC-CCCTTTCTC---CCCAGCCAGGACGTCCCAGGCTCTCCCCCTGTTCCCCGCACCTGGACGGGACTCTGCACAGAAGAGAGTCTCCCGGTCTCGTGTCAGGCTCTGAGTT-CATCCAGCTTCCCAAAATCCATGTTGATATGAACGTTTTCTCCCACAACTGATTGACTG--GACTTTTGTCTCAGGGCAGAGGGAGGCCTCCAGACCAAAACAGCAGGAT--CAGGTCTGGAGCTGACTCAACCCCAAACCCTTGCTAATGCACGACCCAGTCCCCCAGCCTCCAGGATGGGACCTTGGCCTCCTG---TCCCCTCCCTTGTTCCTGCCACTGCTCCTGCAGGTGGAGGCTGCTCATCCCAGGAATCAGTCTGTGAGCTCCAACCTTGGGGCCTCGGTCCAGGAAGGAGGGAGGCTCCAGAGAGCAGAAG s canFam2.chr12 4026842 558 + 75515492 CTTGACACCTGTGGAGTCCAGGGCTGTTCAGAAG----CTTCTTTGTGGCAGTATTGATGATGCTCCCAAGCTCCAGGTCAGCCTCCCCTGAGCAACTTACAGCCCAGACCCTCCCAGGCTGCTCAGTCAGAATTCAGGAGCAGCGCAGCGGCGCCCCCGTGTGGTCACAGGGATGAGGTTGGAAGACCAAGTTCTCCCTTTCTCTTGCACAGCAAGGACCTCCCAGGGTCTCCCTCTGCTCCCAACACCAGATCAGGGCTTTGAACACAAAAGGTTGCCCCTGTC-CATGTCAGG--CTGGGTTGCAAAATGTTCCCCCAAATCCACAATAACATAGATGTTTTCT-------TTGCATGATCACTGATTCCGCCCTCAGGG----GCAAGTTCTCCAGGCAATCACAGCTGGTTCCCAGATCTGGTATGGACCGCACAAAGAA----------------ATTGAGTGCCCGGTCTCCAAAGATAGGACCTAGGACTCCTAAGTTCCTGTCACTTCTTTCTGCTGCTGCCTCTGGGGCTGGA-----CTCAGTTCAG---TAAGTCTGAGAACATAG-----------------CATGAAGGATGAGGG---------GCAGAAG a score=4532 s hg19.chr6_ssto_hap7 2743866 723 + 4928567 aggaagaggaggaggaaaaag-----gaggagggtgaaaggagtcagggaggagAGAAAAGTGGGAAGTGTTTCTTTAGAAGGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggtgtaggtgtgtgtAAAGCAGGAGGGAGTTCCTAGGATCCTGAAGAAAAGAGAGTGAAGGACAGGGGCTA------------AGGGGC--CCAGCCCTGGTAGGTTGAGGGCCCCACTTTCTGTGCTCGGGCCTTACTGTCCTAGCAGAGTCCAGCCCCGGGAAGCCTGGGGTCACAGCACTCGGCTTGCTGGATGGCTGCCTCTTCATTGTCTTTGACAGCAGGAGCTACCTTGCCAGGCCCAGTGGCCACAGGGTCACAGGCAGAGAGCAGGTCCCTCTGCTGGCAGCCAAGGAGATGCTCTTGGAGGATACGTGCACAACTTAGCTGGGAGTCTGAAGATGGTGGTGGGTTACAAAGAGCTCAGCGATGAGCCTGGCCCAAGATTCTGACCCCTTGCCCTGGATCCTGAGGGTTCCACCCTTCCCTATTCCCAACAGGTCTCAAGAATTCTTCTGTTAGTCTCCTGCCCTCTTGGGACAGCCCCGCACTTCCCTCACTTTGATACCCTGGTACCCAGGCATCTGCCTCCTTCATTCTCCTCCAGCTACCCAAGCA--------------CCCCCAGGCCCTGCTCTCTGCCAACCCTGATCCCTGAACTCCAGCACT----TTCCAAACCCACCCCCgaat s canFam2.chr12 4027463 538 + 75515492 AAGAACATGAGAGGGGAAGAGCTTCCAAGGAGGG---AAGGAGTCAGGGAGAAGAGGGGCATGGGAAGGGCTGGTCT--AAGGAACACCTGTTTACAT--------------------------------------GGAGAGGGCTCTCTGGGTCCTG----GACCAGAGTGAAGGGCAGATGCGGTACCAGCCCTATAGGGACCACCAACCCTGG-GTTTTCAAGGTCCCAC--TCCGTGTTAGTACCTTATGACCATGGCTGAGCACA------------------CTTCAGTCGTCAGCCTTC-----AGTTGTTCCTTCCTCCTCTATGGCAAGCAGAGCCTCCCCACCAAGCTGAGGAGC--------------------------CCCTCAGCTGA--------------------------ACATG-------TAGT--GTGGGCTGGACACTGATGTGGACTACAAGGACCTCAGTAACAG----GACCCAGGATGCTGA-------------------------CCACCCAT-----TTCCCAGCAG------------------------------------------TCCCTACACCCTCC--------ATAACTCACTGCCGAGGAGTCTGCATGCTTCCT----CTCTGGTAACCCAAGCACCCTGAGAGTGGACCCCTCAGGCCCTGTTCTCTGCTACTCTCAACCCCTGAACTTAGAAACTCATGCTACATCCCCAGTCCCAAAT a score=7407 s hg19.chr6_ssto_hap7 2758843 237 + 4928567 aatgtccaacaatggtcagagaaatt--tgttcctcagaagaagagtttcagagagaattaaaatagtcatttgaaacattgagtgtataaatcaggagcggggagacataagcatgaagggcgggcctatacaccttcatgagtgtgc--tcgctcttg------acatgagtg-tggacaaaggaatgtccccactagagagtgtcctctttttccctgctggatcagggaaaggtgctggtgtga s canFam2.chr9 19275366 238 + 64418924 aatgtccaacagagcaaagagagagcgatctcccttagactactagtttgatagagaattggaatggacaattaaaacatcagttgtctaaa------atggggagataaaagctggaagggccgacttacacaacttcatgagtgtgtgttcgcattcagcacaaacatgagggctggctaaaggattgtccctactggatag-atcttggttttcctcg-tagatctgggaaagg--ctggtgggg a score=20158 s hg19.chr6_ssto_hap7 2759210 655 + 4928567 ttgcttttctcatacctgatgcagtggtctcaggact-agggatgcaaataaaagtccaggcacaggaattattcctgagcaagaaaccgttaacatatttaaaaaccattatgcaagactgcctaagggcctggagt----agatgtgccttcactgcatctggcaaagttggagctaacattgaatgcagctgtattgcctggaagccaga-tagccaaccagttctctgcctgaataaccctaacctctatgaactggaatggactgatg-ggagacactcgctgttactagcatggtatagctccctgca---taggccagcacagcaggaaaacctaatgtcccttccaaaatgagaaatatttggtataaatgcagaagaggaagaatagtagctgaggtgaaatgaatgaataaatggggta-----tgtaatgaggaaaatccaatataacatgatctcctcaaaagaggtataa-acgaatgatgatattgtcttttatctcatttttaccagatgtctgaaaggttgaagccatatgttgctgagaccattgctatttttgga----------------------CTGCAA---TGGGCG-----------------------------------AATTGATAATGACTAAACAGGACTCTGGTAATGGGCCAGTATCTTTTTACTGCTATGATTCTTCTGCTATAGGAGATCTGTGGTTg s canFam2.chr9 19275650 715 + 64418924 tttctttccgactacttgacgcagtggtcacaggaccgagggctgtaacttcaaagtcaga-acaaggatgattcct-agcaagaaactgg-aacatgttttgaa-cctttatgccataattccttaggtcctgatggggcaagatatatcttcacc-catctgccaaa-ttgggatcaacagtgaattcagctatattacctgatggtaaaagtagctctctagttgc--agctaggtagcattactccatgtgaacgggagtggatggaggaggaggaacttgct------agtgtggcattgctgcctgccatctagattagcacagtgactgaacctaatgtcccttccaaaggtagaaaagtttggtataaatggagaaaaggaaatatcatggctgagggaaagggaataaagagatgggctacgtaatgtaatgagggaaagccagtgttacaataacacctcaagagaggttcagtgtaaaagatgatattgtctcttagctcagttatgccagatcttcaaaaggt-gaagcccc-tcttactgaaactacttctgtttctggaacctgatacaatctatggaagcctccaaatctgagtggccttaccTCTCATGTCCTAGGACTTGGATATAATAGTTATTAATGACTGAATGGGATTTTAATAATGTGCCACTGTCTTTTGACTTTTATGATTGTTTTGCCATAAGAGATCCGCATTCA a score=7848 s hg19.chr6_ssto_hap7 2760195 489 + 4928567 ATGTGGTTAAAGACCAGGAAgtgat-ctgtgatc--caataa-----atatatttggtctttgcccctagtccctgacaggcaggtcctaaaacgcttgcagtccctcagtgat------------aagcatgattttaatatggcaatgagatgactatggggtgaggggctcctagatagtttcaggatggaggctgcttgcc-agaaacacca-gctgtgattagaggattggaactttcactgccatccccatcctctggggaagaaaagggggctggaagttgagctcagtcatcaatggccaatgatttcaccaatcttgcctacacaatgaaacttccatagacacctctagacagtgagttttggagaacttcccagttggtgagcacatccgcatgtccacgtgctgggaggacggcacaccTCATCTCCATAGAGACAGAGGCTTCTGCG---CTTATATCTTTCTGT-AAGGCAGACACCCTTGTTT--CTAGGAGGGACCTAGGG s canFam2.chr9 19276564 472 + 64418924 CCACATTCAAAGACCAATGGGTGATACTGTGATTTATAATAAGGAATGTATATTAGATCTTTATCCC--ATTTCTAGCACAGAGCTCTTAAAACCTTTGGAGTTCCCTAGGTATTACAAGCCACAGAAGTAT-CTTTTGTTATGTTAACAATGTGACCTTTGGAC----TGCACTGA---------AGGCTGGGTGCTGGTTGCCTAGAGACTCAACTCTATGATTAGAAGGTTGAAACTTTC--------------CCTCTGGGACATCgggagaggctgtaggtt-aactcaatctccaatggccaatgatttaatccattgtgcctttgtagtgaagcctccaaaaac-cctgaaaggactggg-ttcagagagcttccaggttggtga--------acatgcagacatggggagagagcagtgcagccc-tccccaga---accttgcctcatgcatcccttccatctggctgtccagacttacacccttttataataaatagtgatctaggg a score=12873 s hg19.chr6_ssto_hap7 2760700 378 + 4928567 TCTCTGGGGCAAATAAAAATGTAGAATCAGAAAATTCAGGCACTTTGCACT---CCTCATGGGACACTCCAGCAGCACTCACGTGACCATCCTGAGAATGGACAGGACACCTGAGGTGGGGAAGGGAGCACAGAACCCAGACACCAGCCTGGACACAGGCACCTGGGATAATCTCCTATTCCTTGGAAAGTTCCAGTAT--------------CTGAGGGAGG------------------------AACAGTGACTTCTGGTCCTGACCTGAGT---GGAGACCGAGGGACTCAGAAGAGCTGGAATCAGACCCCCACACACACTGAGTATGAGTCAGAGAACAAGGCCTGAGAGAAAAAGTCA-----CAGTGCCCAAGACTGCTGCAGGGGTCAAAGGGGACTGCTGATCAG-TGTTCCAGGGAT s canFam2.chr12 71526987 423 - 75515492 TTTTTGGAGGATCTAAGGA-GAAGGGTCAGAAAATTTACAAA-TTTGCATTATACCGGGTGGGCCACCTAAGCAGCACTGTTGTGACCATGCTGAGAATGAAGAGGACAAATGGGG---GAGAGGGAGTGCAAAATACAGACACCAGCCTGAACTCCAGGATCTGGGATACCTTCCTATCCCTTTGGAAGATCTAGAATCAGGATAAGATAGCCTAAGGTAGGAAGTTCCAGGTCTCTGAGTGGGACAACAGAGACTTCTGGTCCTGACCTAGGTAGAGGAAGTCCAGTGCCTCTTAAAACCTGGAGGCAGACCTCCAATTAAGTGGGGTGTGGGACAGGGAGCAAGGCCTGAGGGAGGAAGTCAGTCAGTGGTGCCCAAGGTGAATGCCAGGGTCAAAGAAATCTGCTATTAAATTATTTCAGAGAT a score=20260 s hg19.chr6_ssto_hap7 2761173 707 + 4928567 CACAACTTTTTCAGATTTAAAGAAAAAACAACCCCCGTCTTTCC--CTCCATTCCCAGGAGAAGCTCACTCTGTGGCATCAAGCTGCCTGGG--TGAGCTCTCTTCTAGAAGAGTCCAG--GGGGACAGGCAAGGAATGGGAGGCAGGA-AGTCCAGTTCAGGGAGGGGGATTCTGGGATGAAAAGTGAAGGGAGAGGGACTGAGCCCATGCTGAGGGTTTTTCTCTGGT----TTCTCAGACAGCTCCGGGGCCAAGATTCGGGGAGACATTGAGACAGAGCGTTTG----------ATATAAAAGAAGGGG-GTAAGAGCCAAGTCCCAGGGCCCGGAG----CTTGGCTCTCTGGGCTTCAGGCCCCGAGGGCGGTGCCTGGGATGGGCCGGCTCAGCTTTGGGGTTTCCCGAGCTCCGCTCTCTCTCTTCCACCTTTCCCAACCTGTGTCAGGTCCTTTTACCTGGATACTCATGATGCGGCCTCAGTTCTCACTTCCATTGGGTGTTGGGTTCCTAGATCAGCCAATCAGTGTCGCCGCGGTTCCTGGTTCTAAAGTCCTCGC-CGGCCCACCGGGACTCAGATTCTCCCCAGACGCCAAGGTTGCGGGTCATGGAGTCCCGAACCCTCCTCCTGCTGTTCTCGGGAGCCGTGGCCCTGATCCAGACCTGGGCAGGTGAGTGCGGGGTCGGGAGGGAAAAGGCCTCTGCGGGAAGGAGCGAGGGGCCCG s canFam2.chr12 71599616 709 - 75515492 CACAGCTTCTCCAGGTAAAGAGAAAAG-----CCCTGTCTCTCCATCTCTGCTCCCAGG-GCAGCTGACTGTGTGCTGTCAGAGTCCCTGGGGATGCGTTTCCTCCTAGAAGAGTCCAGAAGGAGACAGGTAGGCGGTGGGAGGTAAGAGAGTCCAGTTCAGCGAGT---ATTCTGGAAAGGGCAGTGA-GGACCAGGGGCAGAGTCCAGCCTGAGAGTCTCTCCCTAGTAGTGTCCTCAGAG---CCCTGGGCCAGGACTCAGGAAGAGGGGGTGACAAAGTGGTCACCTGGTCACCGTGCAGGAGGAGAGGTGTCAGGGCAAAGTCCCGGGTCCCCGGGAAGGCCTGGATCTCAGGGTCCCCGGATG-GAGGGCAG-GTGAGGTGTAGGGAAGCCCAGCGCTGGCGGTCCCCACCTCCCGGGGTTTGACGTCA---TCTCGCGGCCTGGCTCGGGTCCTCCTGCCCGGAGACTCCTGACGCGGTCCCGGCTCGCACTCCCATTGGGTGCGAGGTTTCCGGAGGAGCCAATCAGCGGTCCCG-GGTCCCGGGCTCTAGAGTCCTCCCGAGATCTGCGGGGACGCCGCTACCCCTCCCACCCTGAGGGTCAGGGTCGTGG-GCCCCCAGCGCTCGTCCTGCTGCGGTCGGGGGCCCTGGCCGCGACCCTGACC-GGGCCGGGGAGTgcggg--cgggagcgggggggccgc--ccggcggggACGCGGGACCCG a score=4297 s hg19.chr6_ssto_hap7 2768875 99 + 4928567 GGAAAGCAGGCACATAGGCAATGAGTGGTTCACTGATATTACATCACAGCATATGATAAAATGATAGTATAAGTATCCTCAGAGCCTGTGGCCTCCGTG s canFam2.chr23 42355414 99 + 55389570 GGAACACAGACAAATACATAATAACTGGTTTATTGTTACTATATTATAATACATGATAAAATAATAGTATGCATATTTCCAGACTTTATGACTCCCCTG a score=16800 s hg19.chr6_ssto_hap7 2770664 427 + 4928567 GCTTGGGGCTGCCTGCTATAAACTACTGGGGGTTCGTCCATTTTGGAGTT-ATAACCTAAGGCAGAAA--CTcagatggttcaaatgtc--cttttcatgaag----caatgttattagcgtatcatttagattgtcttgcaagagtctcatttgttgt-ttttctaaatgcctgccaatattgtttgaaaatttacaaatg-tgataaatgtatcttcaaagttaactggttgcaggttgtttaaccttata-tgtacagtttcacatatgtataaaaacagtagtttgggcctcttatattctaataattaagactttaagctgtgtacacattgcaatgcaagtatgcgtcatgcataaccctagcactaagagtcaagagggaaagtacctc-tcccctaacattttacaaagtttctgggttctttttccactga s canFam2.chr12 4031786 419 + 75515492 GTTCAGGAATATCTACTGTAAATTATTGGAGGTTAATCCATTTTAGAGCTCATAACCTAAAATAGAAAAACTCAGATGGTAGAAATCCCTACTTTTCAGGAAGGATACTTTATTATTAGTGCATCATTTAGATTGTCCTACAGTAGTCTCATCTGCTGTATTTTCTTAAAGGCTACAAATCTTGCTTTTAA-TTTATAGATGGTGGTTAGTTTAGCTTCAATATTAGTTGCTTATAGTCTCTTTAACCTTATACTGGATAGTTTCCCACAT------------TAGTTTGGGCTTCTTATGTTCCAATAACTAATACTTTAAGCCATACATATA---CAAGTCAAATATGAATCATACATAACCCTATCGCTAAGAAACATGA-----AGCTTCTCATCCCCCAAAATCCTACCAAAGTTCTTGGTTCTTTTTCCACTGA a score=22089 s hg19.chr6_ssto_hap7 2771091 620 + 4928567 gtgggaacaagtcagctagtgaggaacatgaggcctttg-gcctcatctaaAGATACTTTAGCTACC--AATTGTGAGAAGCACTGACCACCGGGAAGGCCTCCCTGCCTGGTTCCTGGACCTCTATACCATGGCAGAGGCCATCTTCCCTCCTAGTGCAGAGTGATGTCCC--AGATAGTGACCTGGTTAGCCATTGTCCACTCTCGGGCAGTTTTGCCTTCTAAGACATGGGTTTTTCTCTGAGGACCTCCCTGT-TTTCAGATGATCAAAACTGGGGCCATCCACTCCCTTCTGAACCACCTCTGCCCAGTGGCCTGTGGCTGTGC-CCCCAGTCACAACAGGACACGCCTTCAGAACACGCTGCAGGAA-GCCGACATCTCTACAC-AGGCTCACA-CATGCACAGTGTGTGCACGGAGCTTTGGTTCTAGTTCAGGAAGAATGGGAGGAGGCTCACTAGTCCAACAGAGCTTGAGCCCTG-TACCAGT-GTCATATTC----CAGGAGCCAGAGTTACAAGGGATACAA-AGTGCCCAGACCTACCAGAGAAGGCAAACCCCTACAGTATGCAGGGCTAGACAGGGGCAAGAAACAAGGTCATTCTGGGCCAGCAAGAAGAGGGAAAGGGAA s canFam2.chr12 4032388 592 + 75515492 GTGATAACATGTCAGCTAATGGAGAATGTGAGGTCTTGGTGGTTCA---------ACTCTCCCTGCCCCAAGTTTGAGAGCCACTGACCTCCAGGAAGGTCACCCTTCCCAGTTCCTGGATCTCCATGCTATGGCAGAGGCCATCTTCCCACCAAATTCAGCATGATGTCACAAAAACAGTGAGCTGGTTAGCAACTGTCCACTCTCCAGCCATCTTGTTTCCTGAGATACA----TTTTTCTGAGGGCCTACCTTTCTCCCAGATGATCAAAACTGGGACCATCCACTCCCTTCTGAGCCACCTCTACACATAAGGACGGAACTATACACTCCAGCC---ACAGGACA---TTTCAGAATATACTGCAAAAAGGTTAACACATGTACACAAGGCTCACATCATACA------------------TCTGTTTTACTACAGATTTATAGTGAG--GGCTCACAAGTTCAACAAAGCTCAAAATCGATTACTAGTGGTCACATTCTTTTCAAAAGCCAAGGGTACAA-TGACACAACAGTGCTCAAAACTACTAAAGAATGCAAATCCCTACAACATGCAATGCACAACA--GACAAGAAAT---GTCATTCTGGGCCAGCAAAAAGAGAAACAGGAAA a score=5845 s hg19.chr6_ssto_hap7 2772567 158 + 4928567 CAAAGGGGAAATCAGCACTGAAGCAAAGTCAGGAAA----AGCTTTCAAGTCAGATGGGCCTGGACCTGGGCATGAACCCTCCAGGTCCTCCCACCAGCCAGCTGAAGAGGCCTGAGCACATCTGACCCAGAGCTGGCCCCGACAGACACTTGCCCAGTGAG s canFam2.chr12 4032980 150 + 75515492 TAAAGGGGTAATCATTACTTCAGCCAagtcaatagatctgagcttt----tcagg------tagacctgggaatgaattctccaggctttcccaccaaccagctgcaga-ccttgagcGTATCTGGCCCAGAGAGGG-ACTAAGAGATACTTGCTGAATGAG a score=10551 s hg19.chr6_ssto_hap7 2772738 357 + 4928567 AAACCAtctgagccagtttcctcacctgcaaaccagtgacataattcctgccttgcagagtttcagaagaataagtgagaaaagacaCAGTGCCAAGAGAAACAGACACAAGACCTGTGGCGGGCTGGACACCAGGGCTCTAAAGCAAGTTCTGCCTAAACTGGCGAGAACATTTTTCAGGTCAGGAACAGGAGTTGTTCTGGATTCTGTCTGGGGTCAGGCTGGGAGGGAGCTGGGGGTGGCAGAGTAGGATGGGGGCAAGGGCTGTGGCAGGGCCTGGCACTGAAGTGAGGCCAAAGCCTGGAGAGAGTG-----GCTCCTGGTGGCTTTTGGGCAGCTCACGCAACTTCCTGCCTCACC s canFam2.chr12 4034080 275 + 75515492 AACCCTTCTGAGCCAGTTT-----CCAGCACACCAGCAATGTAACTTTTACCTTGCAG--------------AACTGAGAAAGGA--------------GAACAGTTTTTAG---------------------AGTGTTATAAAGCAAGTTCTGCCTCAACTGGCAGGAAC-TTTTTCACATCAG-------------------TCTTGTCTAGGGCCAGGTTGGGAGGGAGGT-------------TAAGTTAGGGGCAGGGCCCTGGGCAGGGCCAGTCACTGAAGCGAGGCCAAGGCCTGGAGGGAAGGAGCCAGTTCCTGGTGGCTGTTGGGCAGTTCAGACAGCTCCCTGCTACACC a score=4114 s hg19.chr6_ssto_hap7 2778649 92 + 4928567 GTTTCCAGGAATTGCTGATTAGGTAATTTAGACCATTCCTTCCACTGAGTACAATGGGAAAAGGAGGAAAACATACATATTTGaaaaatctg s canFam2.chr19 26119858 87 + 56771304 GTTTCTAGCAATGGCTGGCTAGGTAATTTGGACCAGTCCTTCTGCTAAGGGCAACTAGAAAAGTGAGATAAAATG-----TTTAAAAATCTG a score=1507 s hg19.chr6_ssto_hap7 2782691 23 + 4928567 TGGCGGATGTCT--TGAATTTGGTG s canFam2.chr12 3885420 25 + 75515492 TGGCGGATGTGTGTTGAATTTGGTG a score=8780 s hg19.chr6_ssto_hap7 2783049 218 + 4928567 AAATCCtttcgtttgacatgattttagactttgtaaaaattgttttttgttgaatgtatcattctgtggcttgctttatcgtttaatatggtctatgaggtgaacccacacacccatagaaacagttcatttgttttcagtgctggatagtatttatgagacgaatatcccacaatttatctcttctcctgtccgcgacctttagcttgtttctgtta s canFam2.chr12 3885591 205 + 75515492 AAATCCCtttatttggcatg-tttaagactttgtataaattgtttctctctgaatccatcattctgtagcttgctttttcggttaacattatatatgaaatgaatccatgt--ttatccaaatagttcatttatttttattatgagatgggat--------ccaatatgctacaatttattccctctctc--cattgacctttagtttgtttctttct a score=8663 s hg19.chr6_ssto_hap7 2783276 296 + 4928567 ccacaatgaacatcctgggtcatctctctctggtcccctgtgtgagttcccc-aagatacggatgtaggaatgggattactgtgc--ttttaccatatgatgttataggatgtcaaattgttctctgaagaggttgtatcaact----------------------CCCCCCTTTAAAATCTTCTTTGACATTTTACAGGTCAAgttatcttcctccccaactagctgctccgcctcagtcccccttcattggctccttttgctgtagatgctgg--------agcactgtg---ggg-------------ttttactgcctccc-aatcactctagtgtcctcca s canFam2.chr12 3886000 311 + 75515492 ctatagtgaatgttctagggcttctctctttggttccttgtgtaagttcccctaggatatgtttataggagtggaattactgcacatctctaccacatgatgctg----------aattgttctctgaagtgattgcattgttttataGTACTCCTCCCCCTATTGCCCCCCTTTTAAAGCTTCTGTGACATTATATAGTTCTGGTTTTCTTT-------------------------GACGCCCTTTGCTGACTCTCTTTCCTCTAAATACTGGTGTGTTTAAGAACTGTATATGGGCTGCTTGCTCTGTTTTTACTGCCTTCTTAATCACTCTACTTTCATCTA a score=7725 s hg19.chr6_ssto_hap7 2783572 170 + 4928567 ctcccaggattttaaatatcgtctagacacagatggctcccaaatatatatctctaCATATTTCTATAATCAAAAAACTAATGGTACCAaaacaggtactctgatatattg--cagatgggcctgcaaactggaaatgttttcaggaaaggcagtatggcaatttctgtcta s canFam2.chr12 3886732 164 + 75515492 TTCCCAGGATTTTAAATATCATTTATACACAG------CCCGAA-ATATATATCTACATCTTATCATAGTTTAAGAAATAGCA-CACCCAAATAGGTGCTCAAATATATTGTGCAGATGGAATTGCAAACTGGTCATGTTTTTCTGAAAGGCAAAATGGCAATTTCTATCTA a score=780 s hg19.chr6_ssto_hap7 2783900 17 + 4928567 TAATCCAAATGTCTGTC s canFam2.chr12 3886896 17 + 75515492 TAAATTAAATTTCTATC a score=13326 s hg19.chr6_ssto_hap7 2784069 421 + 4928567 AAACATTTAACACAAAAGaagaaagacataggaaactcttgatattccctcatgggatggtctccatgatacatttttaagaagaaataaagcaaggtgtagaataacatatagagtctgctaaaatttgtgtgaaaagggacaaagagatatatatacacatttatatttgcttgcatatgcataaaatatatttggaagaataagcaagaag---atatccctggttgcctgttggggatgagacaggg-taagaaagaGACATTTTACCTTTTGAATATTTTGAA--TTTTGAATTTTGAACTATATCAAGAAATAAAATA------TAATTCCTAGGGCAACCAAACAAACCCCAAAAAAATTCAAAATGAAAAACCTTTTAAAAACTAATAGAA--------------------TTTTTTTAC----Cttttattaaaataaatttttaaaa s canFam2.chr12 3887111 438 + 75515492 AAATCTTTAAAATAAAAaaa-aaagacacaggaagctcttaatacatctttatgggagggtgtccatggtatgtggttaagt-gtaagaaagtaaggtgtaggaaagcatat-------gtcaaaatttgtgtaaaaggaaaaaaatatat-tatatattattacttgtttgcttgcataagcataaaatgtctttggaaaaataagcaagggactaatattagtggttacctgttagggatgggataggggtgagaaagaGACTTTTTATCTTTT--------TGAAGCTTTTGaattaagatataaaacaaaaaacaaaacaaaaacataatttcaaaggagacaaaaataaaattgaaaaa-ctcaaagtaaataaatgaaaagaaaGTGACAGGAATAATTCCTCTACTCTTTTTTTTTTTTTCTCTACTCTTATTAAGATAAAAAATTGGGg a score=2193 s hg19.chr6_ssto_hap7 2784490 47 + 4928567 ttttctaaatattatattattCCTTTAACAAGGAGGTTTACCACCAT s canFam2.chr12 3887729 46 + 75515492 TTGTCTGAAAAT-GTATTGGTTCTTGAACAAGGATGTTTACTACCAt a score=2039 s hg19.chr6_ssto_hap7 2784538 32 + 4928567 TTAATTCAGTACGTTGTTTTCTTTTTAATTGC s canFam2.chr12 3887970 32 + 75515492 TTAACTTAGCAGGTTATTTTCTTTTTAAATGC a score=12816 s hg19.chr6_ssto_hap7 2784570 638 + 4928567 ATG----ATCTTTCTT--TACATCTATCTTTTTTCCATTACAAGGTAAAATAACAGCATGATTAATTAA---ATGCAATTTGTTTGGTGAATGAAACTTTGTTCAAATCTTGGTCTAAGTGGGAAAG-------------------GGATTCTAGGGGATCCAGTGCAGCAGTTATGGGTTTCAGTATGCTCACGACGACCTCCAGTGTTTGTGTGGGCTCATGG----ATGCCATATCTAGAAAACACTGGAATTC----TCAAGCACACGTGACTGAAGCCATTTGCCAAATGTTCAAGGTCCT-ATTAATGGCCCATC-----------TGAGT--ACTTGTCATACGCAGTC------ACCCTATCTTTGGATCAGAAGGTACACTCAGAGCGCCTAGTGTCACATCCCAGGCCCAACCTGCTGAGATTAGTCGAGGAAGGTCTGGAGGTCAGTG--------------------------------------------------------------------------------------TCGTGAGGGGTGGGAAGAC-TGAGGGTGTGGGGGCCAGT-TGTGGAGTGGCGGGAGCCCCAGGTGCTGTATG--AAGCCGAGCCTCTGGATCACCCTGTGA---CCCCACATTTGGTCCCTTCCTGGGTGTCT-TCCATTCCCAGGACTCCCAGGAAATA---AAATGCTGTAAGATTGGGGTGGGGAGCTG---TCCAGGGTGGGTCAGGTGTGGTCTCACTGATCCTACACCTCTGCCTCCCAGCCC s canFam2.chr12 3888180 780 + 75515492 ATGCCGTATCTTTCTTGATATATTTGTTTTTCATTCATTAAGAGGTAGAATAAGGGCACGATTATTCAACAAATGCAATTCGTTTGGTCAAGGACA--TCGACCAAGTCTTG-TTTCAGCAGGAAAGCCCCATCTACAAGACTTTTTGGTTGTTGATGGTTAGACACAATCTTTGTAGCTTT-AGAAGTCTCAGGACGCCCTCTAGTGTCCATATGGATTCAAAGTCCAATGATTCAAAAATAAATCACTGGTGCTTCTAGTCTAGGACATCTTATTGTAGCCATTTGCCAAAATAGCAGAACCATCATTATTCGCCCATTGTGTTATCCTGTTAGTTGGCTTGTCATTGTCAGGCTATGCTACCCTATCTTTGGATTAGAAAGTGTGCTCAGAGTTCCTCAGGTGGCATCATAGGTCCCAATGGCTGAGC---------AAGGGCCTGGAGGTCAATGCTGTGAGTTGACTTAAGTCAACTTATAAGTTCACTTGTCCTGGGTGTCCATTGGGTTTCTACTCATACCTCAAATGCAGTTAACATTTGTGAGGGGTGGAAGGGCCTGAGGGGACAGGAACGAATCTTTGGAGGCACAGTTGCCCCAGGTGCTGTGTGTAAAGTGCTGCTTCTGGATCACCCTCTCAGACCTCCATGTCTGGTGCCTGCCTGGATGTCTGCCCATTGCTGGAACTCAAGGCAATCAGACAAACACGGGATCACTGGGGTTGG-AGCAGGGTTCCAGGATAAGCCAGGTGTGGTTCAGTTTGTCCTATACTGCCGCCTTATAGTCC a score=8867 s hg19.chr6_ssto_hap7 2785211 153 + 4928567 CCCAGCCCTCTTCTGATATTAGAAACCAACACAGATTGCCTTAGGGTGgtggttctcaaagtgtggtcctgggggaagcagcattggcatcacctgggaactt---agatatgcaatcttcagggcctggcctggacctactgtatcagaaactct s canFam2.chr12 3889172 156 + 75515492 TCCAGGCCTCTTCTGATATTAGAAACCAAACCAGACTGACTTGGGGCTAtggttctcaaagtgtggacctgagacaagctgcattggcaacacctgggaacttgttagaaatgcaaatctcaggctctacccagaacctactgaatgagaaattcc a score=12636 s hg19.chr6_ssto_hap7 2785494 311 + 4928567 ctGTTTCAAGTCTCAATATTGAGTAGCTGTGACTTCTGGATAGTCAGGTGTCAGACACCCTTTCTTGCCAGGAGGCACCAGGCTCCTCAATCAGCTTAGTCTCATTCTTGGCCTGGCCCAGGGAAAGATGTTCACTTCCTGGATTCTGAGCAAAGCTCTCCTATCCTGGGTGCCTGTGGGGCTCCCACTTACACCACAAAACAAAGCTCAAATATTTTTTTCTTTTATGAGATTTTTGGTATTCCTTCATTAGTCAGAGCTGAAGATCTACATATATGTCTACCAAGCAAGTGTGCATGTCCCACTAGCCA s canFam2.chr12 3889838 288 + 75515492 CTCTCTCAAGTTTCAATATGCAGTAGCTGTGACTCC-GGATAGTCAGAGGTCAGG-ACACTTTCTTACCAGGAAGCACCTGGCACCTGAATT---------------TAGGCCTGGCCTGGGCAAAGACACTCATGTCCTGGATTCTGAGCCATGTTCACTTGTCCTGGGTGTCCACTGGGTTTCTACTCATACCTC-AAATGCAGTTAACATGTTTGTCTCTTTTATGAGG-TTTTGGGACTCC----TTAGTCAGAGCTGATGGGCTACATATATATCCAAAAAGCCCATGTGCAGCTTGCACTTATCA a score=3089 s hg19.chr6_ssto_hap7 2796784 256 + 4928567 CCATGGGGCTGGGCCGGGTC----CTGCTGTTTCTGGCCGT---CGCCTTCCCTTTTGCACCCCCGGCAGCCGCCGCTGGTGAGTGGGGTTCCTGGCGGTCCCCGGCGGAGCGGGAGCGGCGGGGCGTTTCCGGGGGTCCGGGTGGGTTGCCGCGAGCGCTGTGCGGTCAGGGCGGGGCTCAGGTGTGCTGTCTGG-AGTGCAGGGAGCTGGACGCCGCCTGTTCCCGCCACACCTCAGCCCTGCTTTCCCATCTCCCGTCTCt s canFam2.chr12 3964680 241 + 75515492 CCGTGAGGC-AGGCAGAGTCGTAGCCACTACTCCAGGCCACATGCACCTTTTGCCTTTCAGCT--GGGGAGCTCCACTGGTG-GTAGGGTTCACCTTGGTCAATGGCCCAGCAGGACCC-CGGGGCGCACCTAGGGGTCCCGGTGGGTTTCGGTGAGTGTCA------------GAGAACCATGTCTTCCACCCAGTGGCACAGGAAGGGGGTACCTGTTGCCTGCCACTGCAGCTCAAGCC------CCCTTCTCCAATCTCT a score=492 s hg19.chr6_ssto_hap7 2797346 11 + 4928567 TCCCGTCTCCT s canFam2.chr12 3964921 11 + 75515492 TCGCCTCCCCT a score=3589 s hg19.chr6_ssto_hap7 2797970 212 + 4928567 TAGGGTGTCCTCTGCCTTCATCCCCCGCCCCCGCCACTGAAGGTCCCTCCT--GCCTCCTTTATGGGCCTTTCCTGCAAGCAGCCTTCACTCCGTG----CTGCCC-----------------CTATGCCTCCCCATTCCCAAATGTCCCTGACTCTAACTTTCTGGTGCTGCCTTTTGTCCGGGGGGGGTCTTCCCTCCATCCCACTCCCCTCCAGACCCC--CAAGGAGAGCCCT s canFam2.chr12 3964932 220 + 75515492 CAGAGTCTCCCATGCCCCCACCCTCTGTCT--GCCATTCTCTTTCCTTTCTCTGATCCCTTTCTGGGTCCTCAC------CACTTTCCATCTCATGGCCACTGCCCACAAAGAGGCTTCTGGCCTAGATCTCCCTCCCCCCAACTTTTCC-AACTCTATCTTCCTGAGATGACCTTTTGTCTAGAAG--------TCTCCCTTCCACTGCTCTCCTGCCATCAGCAAGGGGAGCCCT a score=7893 s hg19.chr6_ssto_hap7 2798220 238 + 4928567 CAGCGCAGATGCCCCCTCCCC----------TCCAGTGCAGGTGCCTGCTCTGGGCCCTGCCTCATTGTGG-----------------CCCCTTCCCCACTCCTTCATCCTCAGCCTCACCCTCTTGAGGACCCCACCCTCCAGCCCACAGATGCTGGA--CCATCCCTCCCTGGTCCCTCCGCCCCTCTCCACCTTGGGACCTTGTGCTGCTCCTGTCTCTTGCCCAGCTGCCTGGGGCCCTCAGCAAGTTCTCATCTTTCAGTGG s canFam2.chr12 3965190 251 + 75515492 CAGTTTTGGTGCCCCCTCCTCCTCCCTCCCTTCCAGTGCAGGCACCTGCCCTTGGCCCTCCTTCATCCTGGGCCAGCACCTAGCACCACTCTGTCCCCACTCCTTCATCCT-ACCCTCACCCTCTTGTGGCCTCCACTGTC---CCTGTGG--GCTGGACTCCAGACCTCCCTGATCCCTCTGTACCCTTCCCCCAGGGCCCCTTG-------CCTG-CTGGCGCCCCCCTGCCT--GGCCCTCACCAAGCTCTCCTCTCTCAGGAG a score=2685 s hg19.chr6_ssto_hap7 2798507 363 + 4928567 CCCCACCCTCCCCCAGAGCACCCTCCCCTCCTGTCCTCACCCTAC-CCCAAGTTCTCCCACAGTCACTCC-TGCCCCATGCTCA------------TGCCGCCCTCCAGTTCTTGCTCTGCCCATCTCCCCTCCCCAACCCAGACCTAAAACAGGCTGTTGGGCCAGC---------TGTTCCTTGACCTTCCTTCTTTTCTTTTGGTTCCTTGACCCCAGTGGGCTCTCACTCCCCACACCGCATATCTAAAATCTGTTTTGCCTGCTCTTGGG---GTGCCACTGCTCCCCCTCCAGCATTACTCCTTTTGGCAGGTCCTTCCTCAGGCTGAGAATCTCCCCCT---CCACCTTGGTTTTC-------TCTCTCTGGCCAGCACCCCCACCCCTTGC s canFam2.chr12 3965479 360 + 75515492 CCCTGCTCTCAGCCCATGCCTGCTCCTCTCTTG---TCAGCCTGTAATTAAGTTCTTTCAGGGTCACCCAGTCCCCCATTCCCAGAGCCTCAGCACTAGTGTCCCCTGATC----CTCTTGCCATTCCCTCTCCCCTG--TGGACCAGAAAGCTACTCCAGGTCCAACCTCCCAGATTAATCCTCGGCCCTCATCC--CCCCTTTGGTTTCTTGACC------------CAGTCTTCGAACTG--------------GTTGTTCTTGCCATGTGGTCAGCGCCAGC-CTTTCCTTATAGCCAGCCTCCTCCCAGCCTG-CCTGCTCTGTGCTGGATGTCTTCCCCTAACCCTCCTTGGGTGTCTGGCCTATCGTTCCTCCCAGAACCACCCCCACATGC a score=44301 s hg19.chr6_ssto_hap7 2803541 1365 + 4928567 CCCAGTGGACACTAGCTGTTCCATCCAATTGCTGTCCTGGGGCCTTGTCATGCCACTCTTCCACTTTGGACCCAAGCCCACACCGTTGCTCCCCTCTGGGATACTGACCCCACTATAAACTTCTCTAGGGCTACAA--CCTTCCTAC------CCCTTGTGCCTCATGACCACCCCCTCCCTTGTCCCCACCATGCCCATGATGAGTCTTTTCTCAAGGCAGCTCCCCTTG--CCTCCATCTCACCCTCA--CCTGTGCACCACAGCCACACTGGACATGGGTCCCTCTGAGCCTGAGTCCCTTCCCATTCCCACTG--TCCCCTCTGGCAAGACCTTCCTTCCACCACTGCCTTCATGCTCCTCCCTTGCCCCT-GCAGGGCAGCCTCTCCCCTTGGCC-----CCTATTCC-CTTAGGGGGCTTGTGGCCACCCAGTCCTGGCACCTGACCTACAAGTTTG-CCATCTTCATTCCCCCTTCTTCTGTTCATCAGCCCCCTCCTCTATCCTCCCACCCTCACAGTTTTCCTTGTATATGAAATCTTCGTTCTTGTCCTTTTGCCCATGTGCATTTCCTGCCTCCTCA--------GGGAGGTCGGGACAGCAGACCTGTGT-GTTAAACATCAATGTGAAGTTATTTCCAGGAAGAAGTTTCACCTGTGATTTCCTCT-TCCCCAGAGCCCCACAGTCTTCGTTACAACCTCATGGTGCTGTCCCAGGATGGATCTGTGCAGTCAGGGTTTCTCGCTGAGGGACATCTGGATGGTCAGCCCTTCCTGCGCTATGACAGGCAGAAACGCAGGGCAAAGCCCCAGGGACAGTGGGCAGAAGATGTCCTGGGAGCTAAGACCTGGGACACAGAGACCGAGGACTTGACAGAGAATGGGCAAGACCTCAGGAGGACCCTGACTCATATCAAGGACCAGAAAG-------GAGGTGAGAGTCGG-CAGGGGCAAGAGTAATGGGAGGCCTTCTCCAGGAAAGTTGGAGACAGAGAGCAGGGACCTGTCTCTTCCCGCTGGATCTGGCTGGGGGTGGGGATGAGGAATAG-GGTCAGGGAGGCTCAGC--AGGGTGGTGAGCCGGAACTCAGCCCACACAGGGAGG-CATGGAGGAGGGCCAGGGAGGGGTCGCCGCTGGGCTGAGTTCCTCACTTGGGTGGAAAGGT--GATGGGTTCGGGAATGGAGAAGTCACTGCTGGGTGGGGGCAGGCTTGCATTCCCTCCAGGAGATTAGGGTCTGTGAGATCCATGAAGACAGCAGCACCAGGGGCTCCCGGCATTTCTACTACGATGGGGAGCTCTTCCTCTCCCAA-AACCTGGAGACTCAAGAATCGACAGTGCCCCAGTCCTCCAGAGCTCAGACCTTGGCTATGAACGTCACAAATTTCTGGAA s canFam2.chr12 3965949 1365 + 75515492 CCCAGAGGACACTGGCAGGTCCAACCCATCCCCA-CCTGGGATCACAGCCTGCCACTCTTCCACTT-GGGCCTAAGCCTACACCTTCCTCACCCCTAGGGGCACTGACAC-ACCCTGAGCTCCCCTGTGGTCACCATACCCTCCAACATACAGCCCTTCTGCTTCACTGCCCTTTCTACCCTTGACCCCATCTCTTCCCTGATGAACTTTCACCACAGGCAGCAGCCCCTGACTCTCCACTCCACCATAATCCCCGAGCACCGTGGCATCTCTGGCCATGGATCACTC-AACCTTGGG---CTCCCCACTGCCCCTGCCTCCCTGCTCACAAGGCCTCTCCTTCCCCATGGCCTTCTTGCCCTCCCCCTGCTTCTTGCAGGCCAGTATCTCCCCTTGACCTCTTACCTACACCACCCACAGGACCCCATGCCTTCCTCTCCTGGCTCCCATGCTGCATGTCTGTCCATCTCCACTTCTCTTTGCCAT-TCCTTCTTCCCTCTCCT---TCCTGCC-CCCTTTCCTCTCTTCTTGTATG-GAAAGCCTCCTTCTTGTCCTTT-GTACAGGTGCATTTTCTGCATGCTCAATATTTCAGGCAGTTCAGGACAGCAGAGCTTTTCAGAGAAGGATC--TGTTATGTTGTTCCTTCCAGGTTACTTCATCTGTGATCTACTCCCTCCCCAGATTCCCGCAGTCTTTCTTATAACCTCACAGTGGAGTCC-AAGATGGATGTGTATCG--GAGATTTTTCACTGAGGGACACTTGGATGATCAAGCCTTCCTCCACCTTGACATG------------GTAGAGCCACAGGGACTGTGGGCAGAAGCAGTCCCGGG-TCTGAGACGCAGAACACAGAGGCCAAGGACTTGAGAGAGACTGGAAACAGCCTCAGAATGAGTCTGACAGGTGTCCTGGCCCTGTAGGCACAGGCAAGGTGAGAGTGGGGTCAGAGCAAGAGTGATGGTAGGACTTTCCCAGGGAAGTTCAGGGTAGAGAGCAGAGCCCTGTCTCTTTCC--TGGATTTGGCTGGGGGTGGGGGTGAGGGCTAAAGGTCTGTGGACTTCAGCCTAAGG----GGGCCATTACTGAGCCAGCACAGAGAAGACATAGAGGAG----AGGAAGGGGGGCTCTCTGGCTGGAGTTTGTCACTGGGGCAGGGAAGTCAGAGGGACACAGGGTGGGAGAAGTCACTGCTGGCTGGAGGCAGGCTTGCATTCCCTGCAGGAGATATGGGGCT-CAAGATCTCAGAAGACGACAGCACCAGGAGCTTTGGGCATTTCTGCCATGATGGGGAGCTCTTCCTCTCTTTATGACCTGAAGACCCGTGGATGGACTGTTCCCCCATCCTC---AGCT-GGACCGCGATCATGGAAATCAAGAAGTCCTGGGA a score=39581 s hg19.chr6_ssto_hap7 2805003 1561 + 4928567 AGAACAGGTACCGACCCTGGCCAGGGGCTCTACTGTTCCCGCAATTCTGCTAGAGTTGCCTCGCCTCCCAGCTCTGTCCGGGGAAACCCTCCCTGTGCTATGGATGCAGGCGTTTCCTGTTGGCATATTGTGTCCTGATTTGCCTCTCCTGTTAGAGCCATTGGATAAAGACAGTGGGTCTGGGACTGAACTG------TCCAGTGTTG-TAATCTGGGAAAGCAGTGGGCCCTCTGACAGAAGCCTGAGCCTGGGGTGGGAGTTA--GGCAGGAGAGGAAGCCCTCAGGGCCAGGGCTGCCCCCTCTGCCTCCCGGCCTGCCCATCCCGGAGAGTTCCCTCCTGG--CCCCATGACCCAGGAGTCCACCCTTGACATCCCCCTCCTCAGCATCAATGTGGGGATCCCAGAGCCTGAGGCCACAGTCCCAAGGCCCATCCTCCTGCTAGCCTGGAGGAATTAGGCCCCAGGGTG-AGGACAGACTTACAGAAGGTCCGGGATCTGTGAGGGATTCAGCCAGAGTGAGAACAGTGGAGAGGAGCAGCCCTGTTCCCTGCATCTCCCTTAGAGGGGAGCAGGGCT------------TCACTGGCTCTGCCCTTTCTTCTCCAGTGCCCCCCATGGTGAATGTCACCTGCAGCGAGGTCTCAGAGGGCAACATCACCGTGACATGCAGGGCTTCCAGCTTCTATCCCCGGAATATCACACTGACCTGGCGTCAGGATGGGGTATCTTTGAGCCACAACACCCAGCAGTGGGGGGATGTCCTGCCTGATGGGAATGGAACCTACCAGACCTGGGTGGCCACCAGGATTCGCCAAGGAGAGGAGCAGAGGTTCACCTGCTACATGGAACACAGCGGGAATCACGGCACTCACCCTGTGCCCTCTGGTGAGCCTGGGGTGACCC-TGGAGAGGGTC-------------------AGGCCAGGGTAGGAACAGCAGGGACGGCTGTGGCTCTCT-----GCCCAGTGTATAACAAGTCCCTTTTTTTCAGGGAAGGCGCTGGTGCTTCAGAGTCAACGGACAG--ACTTTCCATATGTTTCTGCTGCTATGCCATGTTTTGTTATTATTATTATTCTCTGTGTCCCTTGTTGCAAGAAGAAAACATCAGCGGCA-----GAGGGTCCAGGTGAGAAAAGGGGACAGTTTCTGGAGATGGGAAAGCTCCTTTCTAGGCAGTAGGGTCTCCTCATTGCTC---CTGCCCAGACAAGACGTAGGTGACAAGGCTGCTGGAACAGGGGATGGAAGCTGGGGTATTTGGGAGGGGAATGGGAGCTGCATCTCCATCTACACCCATAAGTGCTTCTCAAGCCAGGGCTGGGG---CAAGGCCTTCGAATATCCAGCTGTGGCCTCCTCCTGCTGCAAGTGAGGAGTGGGCAGCAGGGAGGGCTGTGGC-ACCTGCTCTGTCCCCATCCCAGCCTCTCTGT-CTCTCGGGCTCACTAGGG-----TGCGTCCAGGTGGGGTGAGTTGGGAATCACGTGCTGATTGCTGAGGGCCTGGATGATCATGGTGTCAGAG-GGAGGAAATAGTAAAGGTGGCTGTGATC---TGGGGA-----------GGGCCAGAAACTGGA-------------------------------------------------------------GAGGAATCCAAGGAGAGG s canFam2.chr12 3967339 1582 + 75515492 AGGTCAGGCATGACCCCCGGGGAAGGAGCCTTCTTCTTCCCCAGACTCACTGA----GCCTCCCCCAGCAGTCCTGTCC--------------TATG----GGATGCGCACATGTTCTGTTGGCACATTGTATTGAGATCCGCCTGTCCTGTTACAGTCTCTAGAGACACCGAGCAGGT-TGGGATGGAAATGAAATCTTCCAGTGTTAATAGTCCAGGGA-GCAGTGGGCTTTCCTACGTAGAACTCAACCAGAGAAGGCAGGTGTCAGCAAGAGAGGAAGTTC------------------------------AGTCTCCCTGTCACAAAGAGTTTCCTTTAGAGTCCCCTCAGCCGAAGAGCCCACCCTCCATG-CCCCCTCGTCAGCAGTAACACATGCATCCAAGAG------ATCCCATTCCT--GGCCCATCCTCCTGCCCGGGCTAAGGACCTGGGTCCCAGGGTGCAGAACAGACTTGGAGCAGGTCTGGGGTCAGTGAGGGCTTCAGCCAGAGGTGGAA-AGTGG-GAGAAGCAGCCTTTCTCTCTG--TCTTTTGTGGAGGTGAGCAGGGCTCAGCCATGGACCTCACCAGCTCTGTGCCTTCTTCCTCAGTGCCCCCAACAGTGAACATGCTCTGCAGCCAGGCCTTGGAAGGCATGATCCCTCTGACATGCTGGGCTTTCAGTTTCTCTCCCAGGAATACCTCCCTGACCTGGCTTCAGGATGGGA-ACCCCTGAGCAAAGATTACCAGTAGTGTCGGGA-----------ATGGGAC--GGACCTACTGGACAGGAGGGGCCATAAAGTCT---CAAGGAGAGGAGCAAAGGTTCACCTGCCAGATGGAAGACACAAGGAACCACACTGTACACTGTGTGCCCTCAAGTGAGCCTGGGGTGATCCGTGGAGGGGGTTCTGACCCTGGTTGAGTTAGGAACCAGGGTCGGGAGAGGAGAGCAGGCC-TGTATCCTTGAGGAGCCCAGGTCACTATAAGGCCC--TTTTCCAGGAAAGGCCCCAGTGCCCCGGAGTGGATGGACAGCTACCTGCCTGCTGCTGCTCCTGCTG------ATTTTCTTACTGTCATCATTGCACGTGTTTTTTTCTCCAAGAACAAGATACCACCAGCAGCTGTGGAAGCCCAGATAAGAATTCTGGGCAGTGGGTAGGGTTGGAGGGGCTC--TCCTAGGACGTGGGG-CACTTTATGTCTCCCTCTGCACAGATCAGA-GGGGATGA-AAAGCTTCTGTAACAGGAGCTGGAAGTCAGAG-AGCTGAGAGGGG-CTGGGAGCCACATCTGCATCTACATCCTT------------AGCC----CTGGGTCCCCAGGGCCCTTGAGTGGTGAG-TGTGGCCTCTCCTTGCTCTGGGTGAGGATTGGGCAGTAGGGA---CTGGGGCTCCCTGCTCTGAGTTTGTCCCTACCTCTCTCTACTCTCAGGCTCGGCAGGACTCTCTGTCTGGAGGTAATGTG---TGGGGACCATGTGTTGACTGGGGAGGGCCCAGGTGATCGTGGGACCAGAGAGGCACAAGCAGTAAAGG-GTCCAAGACCTAGTGGGGAAGTTTAACACTGGGCAAGAATCCAGACCAGAAGTAATGATTCTATTTCCTTCCTGTCCACACCTGTTCCAATATCTTCGGCCATCATGAGGAATCAAAGAAAAGG a score=10099 s hg19.chr6_ssto_hap7 2806564 344 + 4928567 CGGTGCCCACCCGTGTGCCTCCTCCAGGA---------------------------------------GGCACTTTCCAGGTTCCCACCACCTG-------GCCTCCCTGAGTTTCCTTGCAGATGACACAGATGAAT-------AGA-----------TAAGCAGATGTCCCTGGGCCATTTGAGGAGCGGGGCCCAGCCCCTCATCAGGGCAGATGTGGTCCCTGTTTTCATCCTACCTCCAGCGTGTTTTCTTCTGCAGTCCCTGAGGGACACAGTCCCCAGGCGCCATCTCTTTGAGGC------TTTGTTCTGTGCTC-TGTGGCCTTACCTTGCCCTCCCTGAGCCAATTTCCCTTTCTCAAGGTGGTCACTGCCTGGTAAGTTTGGAGTAAGGGACGGTCAGAAGCAT s canFam2.chr12 3969280 407 + 75515492 TTGTAGCCCCTCGAATGGCTCCTCCAGGACCTGTCTCCCGAGTTGTTCCACTGGGTCACTCCCACCTGTGCTCTTTCCTGGTTCCCATCATATGCCCCCATGCTTCCTGGAGTTTTCTTGTGGATCATATGCAAGAGTCTCAGGGAGACTCTGGGGGTGTGAGCAGATAACCCTTGATCATTTGGGTAGAGAGGGTCAGTCCATTCTCAGGGCTGCTGTGGCCACTGCTTTTATCCTGCCTCCCTGATGTGTCCTG-TCCAGGCCCTCAGGG-CACAGTCTAAGA-----AACTACTTAGGGCAGGGCATTCTGTCTGTACCCTTGTGGCCTCACTCTGCCCTCCCTGAGCCGG-TTCCCTTTCTTGTGCTGCTCACTGCCCTGTAGATTTGGAGGAAGGGATGGTCAGAATGAT a score=5244 s hg19.chr6_ssto_hap7 2806908 183 + 4928567 TTCCCCCACAGTCAGGTTGTTTGATGGGGGATGAAAAGAGACAGCAGAAGTTTTGTGTTTCTGCAAAAACAGAGGCAGTGCAGGGGACAGTGAGAGGCTGGGGTGT------CCAGGAGACC------TGAGTCTGGC-------------------GGTAGGGGCGCTGGTTTCTCATCCTTGAACCTAATTGCACTGTCAGTCGGCCCCTCA s canFam2.chr12 3969842 213 + 75515492 TTTCTGTGTAATCAGGCTGGTTGAGGGGAGGTGAAAACAGAAAGATGGAGTTTTGTGTTTGGGCAAAAAACAAGGTGATGCATGGGACAGGGAAAGAATGGGGTGTGTGGGGCCTGGGGTCCTTCAGTTGATTCTACCACTGCTGGGTGACCATCATGGCAGGCAT-CGGATTTCTCACTCTGGAACCTAATCTACTTATAAGCTGGCCTTTAg a score=31011 s hg19.chr6_ssto_hap7 2807093 1333 + 4928567 CCTGAGCAGA-TGGGAAGGTTCGTCCCCTGCCCTGCAGCAAGAGGGCCCTGTCCAGGAGGCACCCACAGC-AGGGGCAGTGCAGGTCTGTGGTCACTCCTGCTCTCACCTGCGGCGTCTCCCGTGGAGGGATTGTCACTTCTGGTTCCCTGTGGGCAGGAATGGTTTCCTCGTAGGTCACTGGGGTTTTGGCCAGGAAAAGGGTATGAAATTCATGTGCCAGTTTATCAAAATTCCTGCTTTCAATGTTGATGTCCAATAAAGATGTTCGTAATTTCAGCTCTATAATCTTAATAGGATTTCCTCTAATACTGCTGTTGTAAAGCATATTAAATAAAACAGGAACTCAAATTTGGAGC---CCCCTCTCCAGAAGGG-TCTGTGTG------GAGATGGTGGCTGTGGCAGCGGCGGTTCCCAGGTGCAGAGGGTGGGCAGAGGCAGCCTCAGGCTAAGGG--------GTCTCCCCTACTCCACGTGGAGAAAAGTCCTTGTAGGTTGCAAGGGCAGTGGCCTGGGTGGAATCCCTGCTAGGGACAGAGCAGGAAGG-CCTCGCAGCCTCA-CCAAGCAGCAGCTCTGGGGTGAAGTAAGTGGACCAGGAGTAAGTGGACCAGGCAGGAGCAGTAGTGACTCAACAGCAGGTCACAGGCCTAGGTGGGTGCTGAAGGTCATGGG--AGGCCAGGCCTCCTCGAGCAAGGTGGGGGGTCCCAGGGTCATGTCAGGTGCAGATCCTGTGGCAGCCATGTCTTTCCATGCTGGGCCTGCTGGGCCCCCCAGGCTTCCTGATGGGGTCCCCAGTTAGGAGCTGCCTGCTCAGGGCTGGGAGGGGAGGAGTGCTG-AGCTGCAGATAGAGGGCAGGGCCCACAGTGGGCAGGGCCTGCCCTGGTGTGCAGGTGCCTCTGCAGGAGAGGAGGGCCTGG------------------------------------GGACTGAGAGCAAGGGTCA---GGGCCTCTCTTTGGGGAGGCCT-CTCACTGTAACAGGACTGGTCAGGCCTGAGAGGAGGGCACTGGGTTCC--CTCTTGGGTCTTGTCCTTTTGTCTTGGGGCCCTTTCACTC-CCTGCACGGTGAGTGGTGGGCACAGGA-CAGGGGCTGATGTTGATGGAGTGATGGGAGAGAACTGACAGGGGCTGGGAAAAGCAAGGAGGGAGGAAGAAAAAAGTGGGGGCCTCATCTTCTCTCAGAGAAAGGGTGAATCTGATTTTGGGGCAACTGAAGAGAGAAAAGTCCTTAGGGAAT---AAACACAACACTGCACCCAGTGGGGCATTTACCCGTTTCCCTCTTCTCCAGAG-CTTGTGAGCCTGCAGGTCCTGGATCAACACCCAGTTGGGACAGGAGACCACAGGGATGCAGCA s canFam2.chr12 3970243 1355 + 75515492 CTTAGGCAGACTGGGATGATTAGTCCCCTGCCCCACACTGAG-GGGCTGAGACCAGGTCACAACTAGAGCAAAGAGCCATGCAGGTCTGCAGATGTTCCTGTTGTTCTCTGGGGTGGCCCTCCCAGAGGGAACACCAGTTTTGATTCCTTA-GGGTAGAAATGATTGCCTCATATATCATTGAGGCATTTACTGGAGAAAGAATACAAAAGTCATGTGTCAATTTCTC-AAATTCCTGCTTTAAATTGTGATGTCCAAAACAAATT------ATTTCAGAAAACGAATTTTAATAGGATTTCTTCAGATCCTGAGCTAGCTTAGTGCGTGAAATATATCAGGAATTCAACCAGAGGGAGGGCTCTTGTCTGGGAGGGTTCCATGTGGGAGGTGGGAGAGAGGTGGTGGCAATGGCAGTCTCAGGGTTCAGAAGATGGACAGA--TAGCCTCAGGCTTGGGGTCTCAAGAACCCCCTCTACCTCATTTAGAAGAAGACTGCAACAGGTTCTCCTTGCA-TTGCCTGGTTAG--TCCCTGCTAGGATTGGGGCCAGAAGGCCCTGGCAGCCTCAGCCAAGCTGCA--CTTGGGGAGGAGCTGTGATTCCAGGTGCAGGTGGGCCAAGAAGGAGCACCGAAGGC-CAAGTGCAGCCTGGCCGCCTGGGTCAGGG-TGAGGGTGGAGGGCAAGGACAGGCCTCTGTGAGCA---TGGGGTGCTCCTGAGTCAGGTCAAATACAGACCCCACTGTAGTCCACTTCTTCTAGACTGTGACTGGT-GGTCACCTGAGCACTCTGATGAGCCTTCCAGTTAGGAGCTGCTGGCTTAGGGCTAGGGAAGGAAGGAGGCTGAAGCTGCAGGT-GAGGTCAGTGCTTGTGGTTGAGAG-----GTCTCTGTGCTCAGGTGTTTATGC---AAATGAGAGCCTGACAGATAGAGAAGAAGCAGTGTTTGTAACCACTGTCTGGCCTGGAGGAACAGGCCACAGGGACATGTCTCTCAGGGGCCATGTTCTCTGTCAGTGGACAGTTGGGACC----AAGAAGGCATTGAGTTTCTGCTCCAGGGTGTTGTCC-TTGGTCCTGGGACCCTTTCCTGCTCCTGTCCAGTAGATGGTGGAGGCAGGGCCAGCTAGTGATGCTGAGGCATCACAGTGGGGAGGGCAGCAAGGGCTGGTAAAGG---GGTGAGAGAGAGATAACAGCAAGGG-TTTATCCTCCTTCAGAGAAAGTCAGAG-CTGAATTTGGAGTAACTGAAG------AAGTTCTGAGCAAGTGCAAAACAATATTTTGCACAAATTGGG--CTCTATGGGTTTCTCTTTTCCCCAAAATCTTGGTAGCCTTCAAGACCTGGATCAACACCAGGTAGCACCAACAAGCCATGATG--GCAGCA a score=8391 s hg19.chr6_ssto_hap7 2814567 381 + 4928567 CCCTGAGGGCAACCACACCTTGCCATGTAGAGCACCTGGCTTCTCACTTGCCAACATCACTCTGACCTGGCTGCAGGAAGGGGAGGAGCCAACTCTGGACTCAAGACTCAAGGGGACCAGACCCAG-GAAGATGAGACATATCAGGGCTGGGCAGCTGTGGGGGGCCCTCCCAGAGAAGGCCTGAGATACACCTGCCTGCAGGTGCTCCTGGGCCTGGAGAAGCCCCTCA--GTGTGACTAGGTGAGGTG-------------------TTGTCAGAG-----------------GACCAGAGGCTGAGGGTGGGGCGTCCCATCCAGATCCTGCCCCCCTCTCTGCCCCAGCACCCAAGGCCCCTTCCTCCCTCCTCTATGGAGATGCTGGG-------GATGTCCTCATTCTCCCTCTGAGCACT s canFam2.chr18 44178368 410 + 58872314 CTCTGAGCATGAGGTCACCCTGAAGTGCTGGGCTCTGGGCTTCTACCCTGCGGAGATCACCTTGACCTGGCAGCGTGATGGGGAGGACCAGACCCAGGACACAGAGCTTGTGGAGACCAGGCCTGGAGGAGATGGGACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACATGCCATATTCTGCACAAGAGCCTGCCCAAGCCCATCACCTTGAGATGGGGTAAGGAGGGGTTTGGCATAGACACTCTTCTCAGAGAACAACTGTGAGGTCATGACTCAAGCCTGAGGTCTGGGCCCCTCG-------CCTTCCCTTCCCTTT----------CCAGAACCACCTCCTCAGTCCACCATCCCCATAGTGAGCATCATTGCTGGCCTGGTTCTCCTTGTGATCACT a score=336 s hg19.chr6_ssto_hap7 2817398 64 + 4928567 atagacatatattaaattaaatcgataattaataacattcagaaacagaaaacatcagccccaa s canFam2.chr2 23303226 58 + 88410189 acatatatataATAGGGTCTATCAATAAATAAGTGGAT--AAAGATGTGatatatca----cat a score=12743 s hg19.chr6_ssto_hap7 2817536 221 + 4928567 acaTACTTTCTTTTGTTGTTGTTGTTATTCAGTGTTAATTTCATAATCATAAACTTAATGCTGCAATCCAGCTAGGCATGGAAGGGAACAAGGAAAACATGAAACCCAAAGGGAACTGCAGTGAGAGCACAAAGATTCTAG-ATACTGCGAGCAGATGGATG---GAGGGTGTTCTCCTGAGCTACAGAAGCAATGGTCTAGTGGTTAAGATAAAACACAAGTCA s canFam2.chr9 47298349 221 + 64418924 ACATGTTTT-TGTTGTTGTTATTGTTGTGTAGTTTTTATTTCATAATCAGAAACTTAACTCTGCAATCCAGCTAGACTTTGAAGGGAGTAAGGAAAATATGGAACCTACTTTG---TGCAGTGAGAACACAAAGATTATAGGATATTTCAAGCAGATGGGGGTGAAGGGGTGCTCTCCTGAGCTACAGAAGGAATGGTCTAGTAGTTAAGATAAAACACAAGTCA a score=11923 s hg19.chr6_ssto_hap7 2818057 176 + 4928567 AACTTAGTCAAGTTGTGTACAGTCAGCGATGGTGATCTTCTTGATGGTCTTGCCATTCCCAGACCCAAAGTGCTCCATGGCCTCCACAATATTCATGCCATCTTTCACCTTGCCAAAGACCATGGGCTTGCCATCCAACCACTCAGTCTTGGCAGTGCAGATGAAAAACTGGGAAT s canFam2.chr9 47298570 176 + 64418924 AATTTATTAGATTTGTCCACAGTAAGCAATACTGATCTTCTTGCTGGTTCTGCCATTCCTGGACCCAAAGCTCTCCATGGCTTCCACGATATTCATGCCCTCTTTCACCTTGCCAAAGACCACATGCTTGCCATCTAATCTTTCAGTCTTGGCAGTGCAGATGAAAAACTGGGCAC a score=22345 s hg19.chr6_ssto_hap7 2818547 366 + 4928567 CATTTGTGTTGGGTCCAGCATTTGCCATGGACAAGATGCCAGGACCTGTATGCTTTAGGATGAAGTTCTCATCATCAAATTTCTCCCCGTAGATGGACTTGCCACCAGTGCCATTATGGCGTGTGAAGTCACCACCCTGACACATAAACCCTGGAATAATTCTGTGAAAGGAGGAACATTTATAATCAAATCCTTTCTCTCCAGTGCTCAGAGCACGAAAGTTTTCTGCTGTCTTTGGAAACTTGTCTGCAAACAGCTTGAAGGAGACACAGCC-------------------CAAGGGCTCACCATTGACAGCGATGTTGAAGGACACGGTGGGGTTGACCATGGCT-GATAGTATGGG--GCTCC-TGATGGTGGCGTCTGCAAAGC s canFam2.chr9 47298746 384 + 64418924 CATTTGTTTAGGGTCCAGCATCTG-----GACAAGATGCCAGGACCTGTGTGCTTAAGGATGAAATTCTCATCATCATATTTCCCCCCATGGATGGATTTGCCACTAGTGCCATAACAGCCTGTGAAGTCACTACCATGGCACATAAATCCCAGAATAATCCTGTGAAAACTGGAAACTTTATAACCAAATCCTTTCTCCTCAGTGCTCAGAGCACAAAAGTTCTCTGCTGTCTTTGGAACTTTGTCTGCAAACAGCTCAAAGGAGGTGCAGCCAATAAAGATGGCAGGTCTTTAGAGACTTGCCATCCATAGCAATGTTGAAGAACATGGTGGAGTTGACCATGGCTGGGTGACATGGGCAGCTCTGGGGTGGTGGCATCTGCAAGGt a score=14453 s hg19.chr6_ssto_hap7 2821456 397 + 4928567 aagaaaaatgaaA----AGAGCTCTCTTAAAAGGTTACTGTGAAAGCCACCTGTGACAGTAACAGAAAGTGCCCAGCAGGGTCTCTGACACTTAGTAATGTAATCTCTCTCACTGTAATGTAATGGCTAAACTTCAACATCCCTCAGCCCCCATCTCCATAAGACTTTCCCATAGAGGCAACAATGATTCCTGTCAGTCACC-CAGTCCTGCCAATCCACTGGGTAGGATACAATATTGAGGGGCCCATCAGCACACTGGCCTTAGGGGGCTCTGCAGCCCCTTGACCTTGTGGATGATGCTGGCCTTAATCTCCT---CTTGTCCGTGGCTAAAGACAGGCCCCTTCTGCGGAGACCAGGCCAGAATGCTCATCTGATTAAGACTCTATATTAAG------AGTCAGGAA s canFam2.chr12 4030679 348 + 75515492 AAAAAAAGTGAAATGAGAAAGCTCTCTTGAAAGGTTACTGTGAAGGTCACCTATGACAAAAACAAAAACTGTCCAGCAGATTC--------------------------------------AATGG----ATTTCAATATTCTTAAGGACCCACCTCCACAAG--TTTCATATAGAGGGTACAGTAATTCAGGTCAGTCACCTCAGTCCTGCCAATTCACTGGGTAGGATGCAGTAC------------CAGCACATTGGCCTCAGGGAGCTCTGCAGCCCTTCAACCTTGTGGATGATGTT--TCTCATACTCCTGTGCTTCTCTCTGGCTGAAAACAGGCTCCTCCTCCAGAAGCCAGACCCAACT-CTCATTTGAATG----TCTGTATTAAACATAAAAGCCGGTAG a score=2014 s hg19.chr6_ssto_hap7 2821853 32 + 4928567 TAACAAAAACAACAATAAATAAATAAACACAG s canFam2.chr12 4031203 32 + 75515492 ttaaaaaaataataataaataaataaaCATAA a score=10991 s hg19.chr6_ssto_hap7 2823237 322 + 4928567 CATCCACTATATTTGAACCGACCCAAAGGCCAGTGCTTTCTTAAT-TAAGTTCCCACAGGTGAACAAAGCCAAAATTCAGATTCTATTTTATTTATGGTTTAGAATTACCTACTGTGAAAAAAAAAAAAAACTAGCTACTATAAATTATTGGGGGTTAGTCCATTTAGTCCATTTTGGAGTTCATAACCTAAAGCAGAAA--CTCACATGGTTGAAATGTCACTTTCCCA--AAGGAT----TGTTATTAGTGTATCATTTAGATTGTCTTGCAAAAGTCTCATTTGTTGTTTTTTCTAAATGGCTGCTAATCTT---TTAAATTAACAGATAG s canFam2.chr12 4031699 289 + 75515492 CATTCAATAGAATTGAACTGACTCAAA---TAGTCTTTCCCTTATACCAATTCTCATAGATGAACA---TCCAAATTCAGACTCTATTTTAG----AGTTCAGGAATATCTACTGT--------------------------AAATTATTGGAGGTTAATCCATTT---------TAGAGCTCATAACCTAAAATAGAAAAACTCAGATGGTAGAAATCCCTACTTTTCAGGAAGGATACTTTATTATTAGTGCATCATTTAGATTGTCCTACAGTAGTCTCATCTGCTGTATTTTCTTAAAGGCTACAAATCTTGCTTTTAATTTATAGATGG a score=9316 s hg19.chr6_ssto_hap7 2824201 227 + 4928567 ACTTtcaatgttaattagttgtggtttgtttaaccatatactgcatagtttcgcttatctataataacagtagtttggggctcttatattctaataattaagacttta-gctgtgtacacattgcaattaaagtatgagtcatgcataaccttatcaccaagatacaagagggaaagcccttctccccttaaacttttacaaaggttctgggttctttttccacttaa s canFam2.chr12 4031998 208 + 75515492 AGCTTCAATATTAGTTGCTTATAGTCTCTTTAACCTTATACTGGATAGTTTCCC------------ACATTAGTTTGGGCTTCTTATGTTCCAATAACTAATACTTTAAGCCATACATATA---CAAGTCAAATATGAATCATACATAACCCTATCGCTAAGAAACATGA-----AGCTTCTCATCCCCCAAAATCCTACCAAAGTTCTTGGTTCTTTTTCCACTGAA a score=22106 s hg19.chr6_ssto_hap7 2824428 620 + 4928567 gtgggaaaaagtcagctaatgaggaacgtaaagtctttg-gcctcatctaaaggtgctttggcccgcaagtgtgagaagcactgACCGCTGGGAAGTCCTCACTGCCTGGTTCCTGGACTCTTACACCATGGCAGAGGCCATCTTCCCTCCCAATGCAGAGTGATATCC---AGATAGCGAGCTGGCTAGCAGCTGTCCACTCTCCAGCAATCCTGCCTTCTGGGGCATGGTTTTCTAAGGACCTTCCTGT-TCCTAGATGATCAAAATTGGGACCAGCCACTCCCTTCTGAGCCACTCCTGCCTCTGGGCCTGTGGCTATGTCACAGTCCAGTCACAACAGGACATCCCTTCAGAACACCCTGCAGGAA-GCTGACATCTCTATGC-AGACTCACA-CATGCACGGTGTGTGCACAGGCCTTTGGTTCTACTTCAGGAGGTGTTGGGGGAGGCTCACTAGTCCAACAGAACTTGAGGCCAGTTGTACCAGT-GTCATATCC----CAGGAGCCAAGGTTACAAGGGATACAA-AGTGCCCAGACCTACCAGAGAAGGCAAACCCCTACAGCATGCAGGGCTAGACAGGGGCAAGAAACAAGGTCATTCTGGGCCAGCAAGAAGAGGGAAAGGG s canFam2.chr12 4032388 590 + 75515492 GTGATAACATGTCAGCTAATGGAGAATGTGAGGTCTTGGTGGTTCAACT-------CTCCCTGCCCCAAGTTTGAGAGCCACTGACCTCCAGGAAGGTCACCCTTCCCAGTTCCTGGATCTCCATGCTATGGCAGAGGCCATCTTCCCACCAAATTCAGCATGATGTCACAAAAACAGTGAGCTGGTTAGCAACTGTCCACTCTCCAGCCATCTTGTTTCCTGAGATACATTTTTCTGAGGGCCTACCTTTCTCCCAGATGATCAAAACTGGGACCATCCACTCCCTTCTGAGCCACCTCTACACATAAGGACGGAACTAT---ACACTCCAGCC---ACAGGACAT---TTCAGAATATACTGCAAAAAGGTTAACACATGTACACAAGGCTCACATCATACA------------------TCTGTTTTACTACAG--ATTTATAGTGAGGGCTCACAAGTTCAACAAAGCTCAAAATCGAT--TACTAGTGGTCACATTCTTTTCAAAAGCCAAGGGTACAA-TGACACAACAGTGCTCAAAACTACTAAAGAATGCAAATCCCTACAACATGCAATGCACAACA--GACAAGAAAT---GTCATTCTGGGCCAGCAAAAAGAGAAACAGGA a score=5360 s hg19.chr6_ssto_hap7 2826081 157 + 4928567 CAAAGGGG-AATCAGCACTTAAGCAAGGTCagga----tgagctttcaagtcaggtggacctagacatgaaccctccaggccctaccaacaaccagctatggaccttcgagcacatcCAGCCTAGAGCTGCCCCCAACAGACACTTCCCCAGTGAA---TGCTGA s canFam2.chr12 4032980 159 + 75515492 TAAAGGGGTAATCATTACTTCAGCCAagtcaatagatctgagcttt----tcaggtagacctgggaatgaattctccaggctttcccaccaaccagctgcagacctt-gagcGTATCTGGCCCAGAGAGG-GACTAAGAGATACTTGCTGAATGAGCCCTTCTGA a score=3157 s hg19.chr6_ssto_hap7 2826238 88 + 4928567 ATGAAACCAtctgagccagtttcctcaggtgcaaaccagtgaggtaattcctaccttgcagagtgaagtgagaaAAGACAGTGTTAAG s canFam2.chr12 4034077 82 + 75515492 AAAAACCCTTCTGAGCCAGTTTCC-----AGCACACCAGCAATGTAACTTTTACCTTGCAGAACTGAGAAAGGAGA-ACAGTTTTTAG a score=40338 s hg19.chr6_ssto_hap7 2826657 665 + 4928567 CCTTTCTGTCTGGCAGCAGCCA-CTGGGTAAACCAAGATGG-TGCATACAAGTACATCCAGAAGCTATGGA---AGAAGCAGTCTGATGTCATGAGCTTTCTTCTGAGGGTCCGCTGCTGGCAGTACCACCAGCTCTCTGCTCTCCACAGGGATCCCCGCCCCACCCAGCCCAATAAAGCACGC-TACTGGGCTACA--GCCAAGCAAGGTTATGTTACATATAAG---------CGCCACGGTGGCTGAAAAT--CTAGTTCCTAAGAAGGCAACTTAACAGCAAGCCTGTCTATCATGGTGTTAACCAGCT--AGTTTGCTTAAAGCCTTCAGTCTGTTACAGAAGAGCAAGCTGGATGCCACTGTGGGGCTCTGAG--TCCTGAATTCTCACTGGGCTGGTTAAAGATTCCACATACAAAGTTTTTGAGGCTATCCTAGTTGATCCATTCCATAACACTATCAGAAGGAAACCTGACACCCAGTGGTCCACAA----------CAAGCATAGGGAGATGCGTAGGCTATC---TGCAGGCCAAGAGAGCCACGGCCTTGGAAAGGGCTGTAAGTTCTACCACACTATTGGTGGTTCTCGCCATGCAGCTTGGAGAAGGTGCAATACTCTCCAGCTCCACAGCTACCGC---------TAATGTTTGTAAAATTCATACCTAATAAACACTAGA------TCAAAAAAAAAAAA s canFam2.chr13 25515844 713 - 66182471 CCTTTCCGTCTGGCGGCAGCCATCAGGGTAGGCCGAGATGGGTGCGTACAAGTACATCCAGGAGCTATGGAGGAAGAAGCAGTCCGATGTCATGCGCTTTCTTCTCAGGGTGTGCTGCTGGCAGTACCGCCAGCTCTCTGCGCTCCACAGGG-CCCCCGCCCAACCCGGCCCAATAAAGCGCGCAGACTGGGCTACAAGGCCAAGCAAAGTTATGTCATGTATTGGATTCGTGTGCATCGTGGTGGCCGCAAACGCCCAGTTCCTAAGGGTGCTACCTA-TGGCAAGCCTGTCCATCATGGTGTTAACCAGCTGAAGTTTGCCCAAAGCCTTCAGTCTGTTGCAGAGGAGCGAGCTGGACGCCACTGTGGAGCTCTGAGAGTCTTGAATTCTTATTGGGTTGGC-GAAGATTCCACATACAAATTCTTTGAGGTTATCCTCATTGATCCATTCCATAAAGCTATCAGAAGAAATCCTGACACCCAGTGGATCACCAAACCAGTCCACAAACACAGGGAGATGCGAGGGCTGACCTATGCAGGCCGCAAGAGTTGTGGCCTTGGGAAGGGTCACAAGTTCCACCACACTATTGGTGGTTCTCACAGTACAGCATGGAGAAGACGCAATACTCTCCAGCTCCACCGTTACCGCTAATATAAGTAATGTTTGTAAAATTCTTACCTAATAAACAATTTAGGACAGTCAAAAAAAAAAAA a score=130485 s hg19.chr6_ssto_hap7 2827349 3062 + 4928567 AGTGCTCTAAAGCAAGTTCTGCCTAAACTGGCAGGGACATTTTTCACATCAGGAACAGGAGTTGTTCCTGGACTCTGTctggggccaggctgggagagacgtggggcagagtggggcaggggcaggggcagggctgggggctggggcctgggcagggccaggCACTCAAGTGAGGCCAAGTCCTGGAGCGAA----CCAGTTCCTGGTGGCCGTTGGACAGCTCACACAGCTCCCTGCCAGGTCACCCGCCATGGTCCTCCCTCTGCCCTGGCTCTCTCGGTACCATTTCCTTCGCCTCCTTCTGCCCTCCTGGTCCTTGGCACCCCAGGGCTCCCATGGGTGCTGCTCCCAAAACCCCAAAGCAAGCATGGAAGAGCAGACCAGCTCCAGAGGAAATGGGAAGATGACGTCCCCTCCCAGGGTAAGTGGCACCACAGGTAGGAACAGAGGGTGTGAGAATTTACACTGGGGTGTGGGAAAAAAAAACCCTCAATCCCACCCTGCACCACCCCACACCA------TGCCTACCCCTGCAGCTCTTTTCTTAGTTCAGCTACCAACTCCTC--TCCCCA-------CCTCCCCCAGCCCAGACCTC-AGGGTTCCCTTCCCTCACCCCACCCCCACCCACAACAGCACAGTCCACAAAGTCCTTGAACAGGATCTATTCCCCCTCACCTAACAGTTAATTATTTCTTAGCGGGG--AGGAGCGGCTGATCCTCTTTCCAGTGACCCCATATCCTT----GTTCAAGGAAGCCAGTTACAGCCCCTGGGCCAGGGAACTCTATTTGCTCCCCCTACTACCACCCAGAGGCCTATGCCCAAGACAGGAAGCTACCTGGCCTTCTCAGTACAGGTGTCCTTAAACGACCGGTTCAAAAACG--------AATAGGGAAGGTGGAATTTCTCACTTCCAGCCACAGCCTGCAACAAAGCTTCCCAGGGCCTCAGCCCCCTGCCCTGGCTGATGCTCCCTCCCTTAATTCCCTGAC---CAGGGCCCTGGGACCCACCGCACAGCTGAGCTGGCCCGAGCTGAAGAGTTGTTGGAGCAGCAGCTGGAGCTGTACCAGGCCCTCCTTGAAGGGCAGGAGGGGGCCTGGGAGGCCCAAGCCCTGGTGCTCAAGATCCAGAAGCTGAAGGAACAGATGAGGAGGCACCAAGAGAGCCTTGGAGGAGGCGCCTAAG-TTTCCCCCAGTGCCCACAGCACCCTCCGGCGCTGAAAATAC-ACGCACCACCCAC-CAGGAGCCTTGGGATCATAAACACCCCAGCGTCTTCCCAGGCCA--GAGAAAGTGGAAGAGACCACAAAGCGCAGGCAATT--------GGCAGGCAGTGGGGGAGCCAGGG--------CTCTGCAGTCTTAGTCCCATTCCCCTT--------TGATC--TCACAGCAG--------------GCAGGGCACCCAGGCCTTATAGGAATT----CACCCTGGACCATGCCCTAAAATAACCTCACCCCAAATACAATAAAGGGACGAAGCACTTATAGATACCACAGACACATGTGTTTCATTTTTAGTTTTGTTAAAAAAAAA--------TTCTGACAAATCAG-AAATGGGGGTTCAGGAGTGGTGGTGATGCAAAAGATGGAAGCCATGGGGTGGGGG-------CTGTCAGGGGTGGG-GGCAGTAGTGTCTCCTTCACCCCCACCCTGGTGTCCTCTCCTGAAG---GACAGACGGTCACATTCCAAAATGGGCG----AGTCTTCTACCGTGTCTGTTCAACTGAGAAGAAAACGTAGCATGGTCAGAATAAGGCATGAAAAGGGGAAAGTGAGGCAGGAA---------CACACGGCAC-ACATGCAGACACTGGTGTACTGCCTGGGTTCAGAGGACGGACGTGGGGGTGAGGGAAGGGATGTAATATGATGAGAGAAGACAAGACACCCCACATAAAGGTCAGAAAAACATCCCAACACAG-CATCAAAGACCAGGGGGCATGAACCAGTCAAGTGTCCATTATGCATCAGATGCCCATGACCTATGTGATGGGATTTCGGACAAACACACTAAGGAACAGGGAGGACCTAAAGGGTT---------TCATGAGATCAGTACTCACTGTAGGAGGAGATGTCTATCTCATCAGGCAGCTCACTAATATTGACCTCAAAGCGATCCTGCACATCATTGAGGATCTTGGCATCATTCTCATCGGACACAAATGTGATAGCCAAGCCCTTGGTGCCAAACCGGCCTGCTCTGGCCACCTGGAGGGAGACAGAGGGTAGCACTGGAAGA--CCGAAGAGGAAAGAGACCCAGAGG---------------CAGGAATGAAGATGTACAAACAGAAA------ACAAGGGAATGGGAGAGTGGGATTTTTTCAGCCTGTGAGGTTTACCCGATGCAGGTAGGTGTCAGAATCCTCAGGCATGTCATAATTAAAAGCAATGTTCACCCGCTCGATGTCCATGCCTCGGCCAAATAGGTTGGTAGCCACAAGAATTCGTCGTTGAAAATCTTTAAACTGCTGATACCGAGAAAGCCTTTGTGAGAAAGGAAATTTAAAACATGTTGAGATTCCCTTCTCT-CAACTGTCTTTTTC---TCCCAAGGACACAAAATATCTTTCCCATCTTCAGCTCACCTCTCCTCCTGGGGCATCCCACGGTGGATGGCAATGGCTGGGAAGTTCTGCTCCACTAGTAGCTGGGCCAAGGCAATGCACCGCTGCACAGACTTCACAAAGATCACCACCTGTTGTGGGGTGGGGTGGGGGGTCGCAAATTGGGGGAATAGGGGTCCATGGTGTGTGAG--AGACATTACGTGGGAGAGGGGAGTTTCTAGTAATTACGTTCTCAGGAATTCCTCTTC-----ATTTCTCTTATTCCCCCACTATATATT----TAGAGCAGAAAAGGAAATATAACTTTACT---TCAGCACTGATTTTTCCCTAAGGAAGCTGGCCTCTGAGGTAGCACAGAGTTCAGAAATCAAAATTGCCAGACATGCTAGG-AGATGAGGATGAGATCACCTCATGA-------AAAAGTGATAAAAAACTAGAATT---------AAGATCTGGAGGGGTAACTGATATTCCTGCTCACCAAAA-CATTAAACCTAAGGGAGCTATCCTAATTCTAGAAAGCAGTTTTAAATGCAAATAGACCACTCACAAGTATATTAATTAAACACt s canFam2.chr12 4034159 3011 + 75515492 AGTGTTATAAAGCAAGTTCTGCCTCAACTGGCAGGAAC-TTTTTCACATCAG--------------------TCTTGTCTAGGGCCAGGTTGGGAGGGA---------------------------GGTTAAGTTAGGGGCAGGGCCCTGGGCAGGGCCAGTCACTGAAGCGAGGCCAAGGCCTGGAGGGAAGGAGCCAGTTCCTGGTGGCTGTTGGGCAGTTCAGACAGCTCCCTGCTA---CACCAGCCATGGTACTCCCTCTGCCCTGGCTCTCCTGTTGC---TGCCGTCGCCTGCTCCTGCCTTCCTGGCCCCTGGCCCCCCAGAGCTCCTGGAGGTGCTGCTCCCAGAGCCCCAAGGCGAGCACAAAAGAGCAGACCAGCTCCACAAGCAGTGGGAAGAGG---TCACCCCCAAGGGTAAGTGGCACCAAAAGTAGGGAGACAGAG-----------------GGGTGGAGGAATC-----CCTTTAATCTTATATT-CACAGGCCTGTTCCAAATAGATACCAACCCC---AACCCAGTCCTTGGACTAG-TCCCAACTCCCAGATCCCCAGCAGTTTCCCCACACGCCCTACACCTCGAGGGCTCTCTCCCCACAGCCCTCCCTCCCT-------GCAGAGTCCAAGAAGTCCTTGACCAGGA---ATTTCCCCTCCTCTAACAGTTAATTATTTCTTGGTGGGGGGAGGGACAGCCAGTCCTCTCCTC------TCCATATCCTTCCTTGCACAAGGAGTCCAGTT-TAACCCCTGAGCCG-------------------CAAACTGCCCCCCACAGGCCTATGCCTAAGACCAGAAGCTACCCTCGCTTCACAGTACAGAGAACCTTA---------TTAATAAAAGGGGGTGGAAATGTGAGAGGCACAACACCGGACTTCCAGCAA------------------------GCCTCAGCTTCCTGCCCTGGCTGATGCTCCCTCCCCTCTGCCCCCCTCATTCAGGGTCCCAGGCCCCGCCCCACAGCTGAGCTGGCCCAAGCTGAGGAGTTGCTGGAGCAGCAGCTGGAGCTGTACCAGGCTCTTCTGGAAGGGCAAGAAGGGGCTTGGGAAGCCCAGGCCCTGGTGCTCAAGATCCAGAAGCTGAAGGAACAGATGAGGAGACACCGGGAGAGCCT---AGGAGACGCCTAAACTTTCCATCAGTTCCCATTTTACCTTCCAACACTGGAAACACTACACACCACCCACACTGGGGCCTTTGGGTCAGAAACATCCCAGC-CCCTCCTAGGCCACTGaaaaaaaaaaaaaaaaaaaaaaGGGAAGACACTTTCACAAAGGGCAGAAATTGAAGTAGCAAGGAGCAATGGCTTCTGCAGTCTTAGTCACATCCCCCTCCCCCCCTCTGATCCCTCCCAACTGACCTGAGCCCCACAGCAGGGCACACAGTCCTTATAAGAATGAATATACACTGAATCATGACCTAA-----TCTCACCCCAAACCCAATAAAGGCATGGAGCACTTACAGACACCACAGACGCATGTGTTT----TTTAGTTTTGttaaaaaaaaaaaaaaaatttCCGACAATTCAGGAAACAGGGATTCAGGAGTGGTGGTGATGCAAAAGGGGGAAGCCATGGGGTGGGGGGTGGGGGTTGTCACGGGTAGGTGGCAGTAGTGTCTCCTTCACCCCATGTCTACTGTCGTCTCCTGAAGAGGGACAGACTGTCACATTCCAAAATGGGTGGGTAAGTCCTCTACCGCGTCTGTTCAACTGGAGAGAAAACATGGCACAATTA---CAAGACATGGAAAAGGCAAGGCT-GGCAGAAAACATGCCCCCACCCCCCACTACATGCAGATGTC--TGTAGTTTGTGGGTGCAAAGGATAGACTGGGGGTAGGGAAAAATAAACTAGCTTGTTAAGAAAAGAGA----------CATACAGATCAACTAAACATCCCAGCAGGGGCATCAAGATCCAAAGGACATAA-----TTAAGTGCCTGTTACACACTAGAGGCTCTTTGTGTACATGATGGGATTTAAGACAAACACACTAAGGAACAAGGAGA--CTGAAGAGTTGAGCCAGTTTCTTAAGATCCATACTCACTGTAAGAGGAAATGTCTATCTCATCTGGCAGCTCACTAATATTGACTTCAAAGCGATCCTGCACATCATTGAGGATCTTGGCATCATTTTCATCTGATACAAATGTGATGGCCAAGCCCTTGGTGCCAAACCGGCCTGCTCGGGCCACCTGGAAGGAGACAGAGGATAGTCCTGGGAGATCCCGAAGTAGGAAGACATCCAAAAAGAAGGGAGAGGCTATCAGGTATGAAGATACAAAATCAGGGGGAGGGGACACTGGAATGCACGTGTGGG------------TGTGGAGCTTACCCGATGCAGGTAAGTGTCAGAATCCTCAGGCATGTCATAGTTGAAGGCAATGTTCACCCGCTCAATGTCCATGCCTCGGCCAAATAGGTTGGTAGCCACAAGAATTCGTCGTTGAAAATCTTTAAACTGCTGATACCGAGAAAGCCTTCGTGAGAAAGGAAATTAGAAAAATACTGAG--TCCCTTCGCTTCAACGGTCTCTTTTCCTTCCCAAGGACACAAAACATCTTTCC-ATTTCTGACTTACCTCTCCTCCTGGGGCATCCCTCGGTGGATGGCAATGGCTGGGAAGTTCTGCTCTACCAGCAGCTGGGCGAGGGCAATGCAACGCTGCACAGACTTCACAAAGATCACCACCTG----GGTGTGTGACAG------------TTGGGGGACATGGGTCCATGTGGGATAAGTGAGAGATTAAGTGTGAGAAG--AGTTTTCAGTAACTACTCTTTTA-------CTCTTCCTGAAACTTCTCCAAT--CCCCATTACATATTCCTCTTCTGTTCTAAATACAACTTAGCCTTTCTCACTCAGTTCTGATTTTTCC-TGAGCAGACATGCTGAAGAGAAGATACAGAGAAAAGTAACTAAAACTACCAGATATGTTAGGGAGACAAGGATGA----AGCTAATGGTAAAAATGAAAGTGGTAAAAATTTAAAGTGTGGAAAAAAAAAATTTAAAGTGTGGAGAGTAGTTTCTGCTCATCAAAAACATCAAACATATGCAATTTACCTTAATTTTAGAAAG---TTTTTGGTGCAAACGAACCAC-AGCAGGTAAAGTAGTGGAACATT a score=1975 s hg19.chr6_ssto_hap7 2830727 105 + 4928567 TCTCTTGAATAAGCAGTTATTAGAGGAATTAAACATTCAAGAACCCTAACATGCCCCCAAACATCGTTTCAAGACTTTTAACAACTTCCTAAAATCCT-TCAAGGA s canFam2.chr12 4037170 98 + 75515492 TCTTCTCAGTAAACAGT-ACAAGAAAAAACAAATTTTAAAAA--CCTAAGAAACCC---AAGAT-ATTTTGGAACTTTTA-CAAGTTTATGAAATCCTCTCAAGGA a score=45872 s hg19.chr6_ssto_hap7 2831133 838 + 4928567 TTTTGAAGTTTATTTTCCTTGAGGTTATTGAGGACATACCCGTGCCAGCCATAGAATAGAAAAGCAGCTCCCACCTTACTCATGCTCAGCCCCTAAGATATTTATACCCTCATT----------------------------------ATTCTCTCCCACATCACACATGTGATTTCCTCAATAAAAGTGTACTTAATATCCAGGTTTCTGCTACAGCTGGAGTGCTCCAATGCTCATCCCCCTACTGGACGTC---TAACTGACCTGGTTGAACTCAAGGACATCCAGAAGGTCAAAGAGCTTCCGGTTCTTCTCGTTGTCCTTCAGTTTCACGTAGTACTGCTGCAACCCATGCAGCGTCAACTTCGTCTCATCATCCACGAAGATCTCCATTGGCTggggg-----ggaggaagggggtggggaacgggaggagggcagagtgggggggTTAAACCTGGGGGGGTGGAGGAAGTTGATCTCCAATACACCCCATGGGGGGATGGGGAGGAAAGAGAAGATTGAAAACCCCACCCCACTCCCAAAAATACCCATATTTTACTGTGGTCTCTCTCACATTACATCTAATTTCCTTCCTATCAGATGAGTTTTAAGACTGCCCAACTAAAAACTATCATGGGAAAGAAACTGCAAATGAAGTC----AAGGAGCAGTGAAACCACCCAATGGCACAGATGCCATTACCTCAAATAGAGGTGGGAGAGGAAAGAAAA---TGGGAGATGATTCTCAAAGGGAGAGCAAGGACCAAACATCTGGGAAATGATGGGAGGCAGTGACTCAAGGTCAGAATAACTCCATCAGAGGTGCTTCTAAGAACATGGGGTGGGGGGAGGACA---ACTGCTCCATTTGA---TTCTCCTACTT s canFam2.chr12 4037268 854 + 75515492 TTTTGAGATTTTTCTT---------TACTCAATACCTGGCTGTGACAGCCAAAGAACAGAACAGCAGCTCCCATCTTGTTCACACTCAGCACCAAAGGCACTTAAATTCTCATTTAAAAGAATTTCATTTGAAGGTAATTTCCCCACTGTTCTCGCTCACATCACCTATGTCATATCCTCAACAAAAAGGTACTTAA---CCAGGTTTCTGCTACAGTTGGAG-----ACGTGCTCATCCCCCTACTGGACTTTGAACAACTGACCTGATTGAACTCAAGGACATCGAGAAGGTCAAAGAGCTTCCGGTTCTTCTCGTTGTCCTTCAGTTTCACGTAGTACTGCTGCAACCCATGCAGCGTCAGCTTCGTCTCATCATCCACGAAGATCTCCATTGGCTgggggagggaggggggagtagggggggaacgggaggagggcagagtgggggggTTAAACCTGGGGGGGTGGAGGAACTTGATCTCCAAAACACCCCATTGGGGGATGGGAA---AAGAGAAGACTGAAAACCCCACCACACCCCCAAAAATATCCTCATTTTAATGTGGTCTCTTCCACGTTAGCTCTAATTTCCTTCCTAGCAGTTG--TTTTAAGATTGCCCAAGTA-------TCACGGGAAGGTAACCTGGCAAGGAGTTTGAAAAGGAGCAGTGAGACCACCCAATGGCA-AGATGCCATGACCTCAAAAGGAGGTAGCAGAGGAAAGAAAACAATGGGAGAGGATCCCCAAAGGGAAAATGTAATCCAAACACCTGGGAATTGGTGG-ACATGGTGACTCGAGGTCAGGA--ATTCCACCACTATTGGTTGTAAAAATA------GAGGGGAAGACAGGGATTGCTCCATTTGAGTATTCTCCCAACT a score=10372 s hg19.chr6_ssto_hap7 2831971 248 + 4928567 CAACTAAGAGAATCTCGTGTGCATTAGCAAAGTGGAT-GTCTTTTAAGATCAGAATGCTGCAATGGACA--GTCAAAA-TGCCACTTAAGGAGAAACAAAAATTACTCAAGATGAGTTAC---TTGCCGTCAGACCACAACAGGATAGTTTTAGATGAGACTGGTCTCTTGACTAAGAATTAAACCATCTACAGGTTTACAGGAAAGGTATCAGTAAGTGGTGTTAAAATACCAAATTCAGAGCAGCAGATACAC s canFam2.chr12 4038326 240 + 75515492 CAACTAAGAGAATCAGATCCACATCAGGAGGGTGGATTATCTGTCAAGATCAGAATGCTAAAATGAACATAGTCAAAAATACCATG-----------AAAAGTTACTCAGGATGAGTAACAACTCGCCCTCAGACCACAAGGGAATAGTTC-AGATGGCACTGGTCTCTGAACTAGGAGTCAAATCAACTA--GTGTTACATGGACAGTACCAATAAATGGTGTTAAGA-AACAAATTCAGAGCAGCAGATATAC a score=7565 s hg19.chr6_ssto_hap7 2832356 232 + 4928567 tacaggcacacaccaTTATACCTCACTGCATTCATCTTTAAAATTAAAAAACCCCCTGAAGGGGAGGAAAGTAACAAAGACAGAAATTACCA-----------CAACTCCAAAGCCCAACTTTCCTAACACTTTTTATACTATCCTGGGGGAAGATAGTTAATATGAAGACCCAGAGGACAAAAT---AGGAAAGGATGCGTGTGTCATGGGAAAAAAACCAGAAGCCCAATCCCAGAAGGCAGGt s canFam2.chr12 4038629 226 + 75515492 tatatacacacac----ataCACACACGCACGCACACATAAAA---------CCCTTTAAGGGGAGGAAGATAGCAAAAAAAAAAACAAACTGACACAAGACTCAACTCCTGAGTCCAAGTTTCCTAGCACTCTTCA--CTAACCTGGGG--ACATAATTAACATGAACACCCAGGGCCCAAGGTTTCAGGAAAGGATGAGTGG--CACGGGAGAGAA-CCAGAAGCCCAATCCCAGAAAGCAGGC a score=143116 s hg19.chr6_ssto_hap7 2832879 2659 + 4928567 AAGGCAGGCTTTCTAAAGAGAAGTTCCATGGCCTCCTTCAAATCTCATTCTAGCCCCAAATACAGCTAAAG---AGTGATCATCCCACGGGAAGGAACACTGCAGGGAGGGGAAGAACACACTCCACTGCTTATGCAATTGGCCCCACCTAGCCCCAAACCCTAACAACCACCCGATTACATCCA--------------CTTTACCTTTCCTATGTCCCTCTCCTCTGAGtattaaaaaaaacaaaaaaatttttttaagaaa---aaaaatCTACCACCCCATTCAGGACACCCCTCCCC--AACACATATTGGGGGAAACGGGG--CACGGCACGCGTTGGGTTCAGGAAAAAAACCGGGAACGGAAAAAGAGGCTGGTTTGGTCCTCAGCTTCCTGGTCAGGTTTCCCCGCGGCCTCCGCTGCCGCCATCCACCGCTGGGTGCCGTCTGCATT-CCCTCGCCGCGCCACGGTGCTTCTCTGTTGCCGGCTCACATCAACCGAGGTTCCAGATGGGTGCAAGGAGATGTGGGTGGGAAGGAGTAGGGTATCGGGGATTGAGGTGCCAAAGGCCCCCACCCCTGGAGGTGGGGAAGGGGAGGATTCATTTGTGCTGAT-GCTCTTCTTTTGGACATGCCCTGCCATCTGTCTGTCCCTCTCTTGCTCTCCTGCCACCGGGAAGTAGGAGTTTTGGTGAGCAGAAGGCTCCAGCTGTACGCTCGATGCCACCTTGAGGGTGCGTGGCTGTAG-GGTGCATGTAAGAGACGATGGATGGGTGGGTGGTAGGGCAGAAAAATCCTGCCCTCCCCCAAA--GGGAGAAGAGGTTCAAAAATGTTGTGATTTATGAAAAA-------------GTCGAACACTACCCGCTCTCACATTAACCCGACCAAGTCTTCCGGAGTTTCCCTGGCACCCGCGCAGGCCCTAACACTAGCTGTCTCTGCTTCTGTATGTCTCTTCAAGGAGTCATTACTCCCAGTTGGGCACAAGCCGCCTTCTTGGCACTTGAATGACAAGGGAGTCTg-aggaagagggcgaggaaggggaggaggcagcgggcggggagtggagggagagaaggtagaagggTATTTACATCTTGCATGAACTTGCGGCAGACTGGACGGATCTCTTTGCTCAAGGTAGCACTGAACATCATGACCTGCTTCTCGTGGGGGGTCATGCGAAAAATTTCCTGGACATCCCGACGCATGTCTACAAGAACAAGGAAAAAAATTGTAGGAGAAAATAAGCAGGTATGATAAACAAAGATTAGAGGTAGACTTCCCAGTGAGGTGAAGATTGCTGGAAATAG-------------------------------------------------------------TAACAACAca---atggaaagagca-atgga---cttggaatcaagaagtgggatcagattccagc--tgtttgttttaaccaagcaagaa-ataaggtaaaaccccaaagttcccaactatgaaatggggataaAGCCCAGTGCAGAGGCTCTCAA------GGCCTTCAAAACATGCTTTATG-GGACCTTCTCCCAACCCTTTCCTGCCCAAGCCCCAGCCAGCCTTCAGCAGACTACAAATATCAAGCACATA-TTATATTCCAGATATCAGAGTCCA-TCTATGACTC-TCTGGATTACTTTTCTATCAAGTCAGGCAAATATGACATCCCTACCTGGAGCCCACCTTTATAGCTCACCATATAGAATTGCCAAAGATCATTTGTAATGACTTAT---GGGGCCTATGTCCAACCCCACTC--TCATTCA-------------CCAAGATTCAATTCTTACAGAAAA----ATCTTCCATTAACCCCACCTGGCACACTAGAATACCACATCACACAAACTGCTACAAACACTCTCTACATTAATCCCAG-ACCTGAGTCTAGACACTTATTCAGCTATAAATTCTGACTGTAAATGCTGTGCTGGAGATGCCAGAAGGGTACTG--TCTTCTCTTTCAGTTTAGAATCTCCGCTATGACT-CCCAGTATATGAATCTATAATG----AAAACGGTGGTGGTGGTGATGACTTATGCCTAAAA--TTATCAAAGTC---CCCTATTCTCAAAGGTTAAAAACAAAA------ATCATAGAAAGATGATAGATGACACCCTTTACTGTGCTTA--------------AAAGCATAATAAAGACCAACCAGGGAACCCAGAGCCATCAGTCATGGGTGATAGAT-AAGAGTCGTCCTTGCACTGAGGTGCTCCTGTTTCAAATAAACATCATTTGGCTCCAAAGAACAACTCCCC-AGCATTAGCCAAGCCCCAGCACTGCCACTCACCGAGCTGTTCAAGCATCTTATCACATTCATCCAAAATAAAGTGTTTAATGTGTTTGAGGTTGAGGCTCTTATTTCGAGCCAGGGCTAGGATACGGCCTGGAGTCCCCACGACGATATGCGGGCAGTTCTTCTTCAGCACCTCTTCATCCTTCTTGATAGACAGACCACCAAAAAAAACAGCAACCTG--CCGAGCCAGAAGCAAAGA--GTCTCAAAACAGAGGAAGGAAAGAGTCCAATCCCCCCAGGGTTCCCACTCT----GTTTGAGCTAAACCAATTTTTAGCATGTTTCCAAACTAAAACTAACTTTAGAGGGCACCTAATTTAAAAATTTTATGTCCCCCCCACCAAACACTGAGGgtga--------------ttgcctaaagttacatggctagtcggagcagtcaggacaataattcagttctactgactTAATCTAACCAACTTCCTT----CATTTATGAGGCCAGGCTTC s canFam2.chr12 4038860 2766 + 75515492 AAAGCAGGCTTTTCAAAATGAAGCTTCATGGCCTCCTTCAAATCT------AGCCCCAAGTATAACTAAAGGTAACTGA-CATCCCACGGGAAGGAGCAGTACAGGATAAGAAAGAATACACTGCACTGTTTATACAATAGGGCCCGTCTAGTGCCAAACCCTAACACCCACCTGGTTACATCCAAGTGGAGCTCCTCACATTACTTTTCCCATATCCCTCTCCTTGGAGTATTAAAAAA----------TTGTTTTAAAAAAGAAAAAAAACTACCCCCCGTTTCAGGACACCCCTCCCCCCAACACATATGGGGAAAAACAGGGAGCACGGCACGCCTTGGATTCAGGAAAAAAACCGGGAACAGAAAAAGAGGCTGGTTTGGTCCTCAGCTTCCTGGTCAGGTTTCCCCGCGGCCTCCGCTGCCGCCATCCACCGCTGGGTGCCGTCTGCATTTCCCCCGCCGTTCCATGGTGCTTCTCCGCTGCCGGCTCACATCAGCCGAGATTCCGGATGGGTGCGAGGAGGTATGGACGG-AAGGAGTAAGGGATCGGGGACTGAGGTGCCAAAGGCCCCCACCCCTGGAGGTGGGGAGGGAGCGGATTCATTTGTGCTGTTTGCTCTTCTTTTGGACATGCCCTGCCATCTGTCTGTCCCTCTCTTGCTCTCCTGCCACCGGGGGGT-TGAGTTTTGGGGAGCAGAAGGCTCCAACTGTCTGCTCCATGCCACCTTGAGGGTGCGTGGCTGTAAAGGGGTATGTAGGAGACGATGG----GTGGGTAGTAGGGCAGAAAA-TCCTGCCCTCCCCCAAAAAGGAAGAAGAGGTTCAAAAATGCTGTGATGaaaaaaaaaaaaaaaaaaaaaGGTCGAACACTACCCGCTCTCAAGTTAACCCGACCAAGTCTTCCGGAGTTTCCCTGGCACCCGCGCAGACCCTAACACTAGCTGTCTCTGCCTCTGTGTGTCTCTTCAAGGAGTCATCACTCCCAGATGGGCACGTGCCCCCTTCTTGGCATTTGAAGGACAAGGGAGTCTGGAGGAAGAGGGCGCAGAAGGGGAGGAGGCAGTGGGCGGGGAGTGGAGGGAGAGAAGGTAGAAGGGTATTTACGTCTTGCATGAACTTGCGGCAGACAGGACGGATCTCTTTGCTCAAGGTAGCACTGAACATCATGACCTGCTTCTCATGGGGGGTCATGCGAAAAATTTCCTGGACATCCCGACGCATGTCTACAAGAAAAAGGAAAAAAATCCTAGAAGGAAAGAAGGAAATGTCATAGACAAAGACCGGAGACAGCCTCCCCAGTGAGGTGAA-ACTGCTGGAAACAGGTAAGCAAGAGCCATTTCCCACAAAGATTTGTCTCAGGTACTCTATTTACACGAACCACCGTAAAATCACATCCATTGCAGTAACACATGGAAAATTTCAAATAAAGACCTAGAACCAAATTTCAGCACTATGTGTTTTAGCCAGGCAAGAAGATAA--TGAAACTCCAAATCTCACAAGTATGATATGGAGATGAAGTCTACTGCAGAGGCTCACAAACCTAAGACCCTTGAGAGATGCTTTACAAGGCCCTTCTCCCTAC---TTTCTCCCCACACCCCAACT-----------GTCTACAAATACTGCACACATAATTATATTCTAGTTGTCAAAGTCTAGTCCATGCTTCCTCTGGATCACTGTCCTATCCAGCCAGGCAAATAAGAC--CTCTACCCAGAGCCCATCTT-ATAGTTCACCATCTAAAATAACCGAAGATCACTTGGAACTACTTATCCCTGGGGCTAAGTCCATCCCCACTCCCTCATTTATTAAATGTGAGTTCCAATTTTCCACTCATTTATTAAATGTGAGTTACAATTTTCCTTTCTTG------TGGAACACTGAATTACAGAAAATCCCATAAAC--TCTCCACATTAATCCTAGCACTTAAGTCTA--------TTCAGTTACAAATTCTGA-TATA-----TGTGCAGGGGATGCCAGAAAGTAAATGGTCTTCCTCCTTCAGTTTATC-TCCCCAGTTTATCTACCCAGCATAAGAATCTATAAAGGCAAAGAACAGTGGTG-------TGACTGATGTCTAAAAAATCAGCAAAGTTAATCCC----CTCAAAG----AAAAAAGAACTCTCCATCACAGAAAGAAAGGACAAAACACCCTTCCCCTTGATCACCAAGGTTGCTTAAAAAGCCTAACAAAAACCAAC-AGGAGAGCCAGAGCCATCAGTCATGGGTGATAGATTAAGAGTCGTCCTGGCACTAAAGTGCTCCTCTATCAAATAAACATCATTTGGCTCTAAAGAGCAACTCCCAGATCACTAGCTTCACCCCAGCACTGTCACTCACCGAGCTGTTCAAGCATCTTATCACATTCATCCAAGATAAAGTGTTTAATGTGTTTGAGATTGAGGCTCTTATTTCGAGCCAGGGCGAGGATGCGGCCAGGGGTCCCCACAACAATATGCGGGCAATTCTTCTTCAGCACCTCTTCATCCTTCTTGATAGACAGACCACCAAAAAACACCGCGACCTGTATTAACCCAGGAGAAAATACGGTCTCAC--------AAGGAAAGAGTCCAATCTCCCCA--GTTCCCACCCTTTAAATTTAATCTAcatgaattcttagaacatttcaaagctaaaaggaacatcaaaggtcagcaaatctaaaattcttattacgtttc--ccaaacactgaagctaagaaacaaaagtgtcttgcctaaagttatgtggctaatcaaggtagttaggactagca-----ttcttctgactTAATCTAATAATCTTCCTTCCCACAGTGCTATGGCCAGACTTC a score=4141 s hg19.chr6_ssto_hap7 2836032 70 + 4928567 GGACAGCAAGAAATCACCAGATTAGTGTAAAGTACCACAAAA-AACACATGGAACATTAAGGTTTCCTAAA s canFam2.chr12 4041751 68 + 75515492 GGACAGCAAGAAATCACCAG---AGTGCAAAGTACCACAAAATGCCTCATAGAACATCAAATTTTCCTAAA a score=3668 s hg19.chr6_ssto_hap7 2836102 92 + 4928567 TAAACCCAGAATCTCAAAC-TCTTTTCACACAAACCCCATGAAATTACTGCTTCGGGCTAAATATTATCATTTCATGTTAAAACCATTAGGTG s canFam2.chr12 4041956 92 + 75515492 TGAACTCAGATTTTCAAATGCCTTTTTGCACAAACCCTATCAAATTATTGATTTAAGCTACACA-TACTACTCCGTATTAAAAACGTTACGGg a score=5563 s hg19.chr6_ssto_hap7 2836198 135 + 4928567 GTTGTTTGGGGATCTGGGCC---TTGGTACAGTATCAAATAACACCAGAAACTACTTTCTGGTTTCAAGGGGGAAAAGAACAACTGTGGAATCAGACTGTCACGACGCTAATCCTATGGTAAATCTAAAATCATTAAT s canFam2.chr12 4042259 124 + 75515492 ATTTGTTGAGAATCTGAGCCTTATTATTATAGTATCGAATAACACCAGAAACTGCTTTCCAGCTTCAAAGAATGAAAAATCAATTACAAGATCAGACTGT--------------TATGATAAAACTAAAAGCACTAAT a score=4149 s hg19.chr6_ssto_hap7 2836652 85 + 4928567 CATAAGTCGACCAGATTTGTGGCATAACAGGAgataca----gtatcacctatgaaggattcttgccaaaaatgcttaacttcaatcAG s canFam2.chr12 4042383 89 + 75515492 TATGGGACAACCAAGTCTGCTGAAGAACAggaaatatacagtgtatcaactctgaacaattcttgccaaaaatgtttaacttaaattag a score=8412 s hg19.chr6_ssto_hap7 2837039 229 + 4928567 AGAATCCTCAATATTCACACACCACT-------GGAGCTGTTTTAAAGTTTCCGGCTTTCTCTGCCACATACCCCAAAATTATTAAACTG-----------------ATATGATTCAAAGTCAGTATAAAGTAGTAAGAAA----AGGGTGGTCTTGTGTTAAGCATCATCCATAGCCCAATT-ACGAATCCTCCTGTTACATAGGAACTCAACAC--TCTGTTACACCACAGCAAACTAAAGCTTCTCCAAAATTAAAG s canFam2.chr12 4044167 256 + 75515492 AGAATCCTCAAAATTCACACACCACACACTTAAAGAGATATTTTGAAGCTTCCAGCTTTCTCTTGCACACATCCTAGAATTCTCAAACTGTCAACCAAAGCACAATGAAATCATTCAAAGTCAGTATAAAAAAGTAGTAAACCCAAGTGTAGTACTGTGGTAAACATCCTCCAGAACCCATTCCATGCAGTCTTCCGCTGCTAGCTATATTAACATGATGTGTTA----AGAACAAACTAAAGCTTCTCCAAAATTGGAA a score=66658 s hg19.chr6_ssto_hap7 2837268 1306 + 4928567 AGACTATTGGCCTACAAGTTTCTTATCCCTCCAACTTGCCACACCCTCACTCTCAGGTCTCTTTACCTTGGCTTACCTTGACATTGGGCATGTATTTAGAGAAGCGCTCATATTCCTTGCTGATCTGAAAAGCCAACTCCCGAGTGTGACACATCACCAGTACAGACACCTTAGGCAG-----GAAGTAGACGGAGACATATGGTAAATGTAGCTCTTCATTATCCCCTCTAGGGAAGTGACTGTCACAAAAACACACCTGGGCCGATAATAAATGACTTCAATTATGTGATCTAAATCATGAACCCCACGCTTGCGACAGAACATCCCCCACAGCTGTCAGGTTGTCAAGGGTAACAGAGGTCATGT-----------GCTCATGGCTCTGCAAGCATCATGTAGCTAGGACAAAAACACCCTTCCCTTATAGTCCTAACCAAAA-TCCCCTCCCCAGCACTCTCCCCAAATATACCTGCCCAGTAACTGGCTCCAGCTGTTGCAGTGTGGCCAAGACAAACACTGCTGTCTTTCCCATGCCCGACTTGGCCTGGCACAGGACATCCATTCCCAGAATGGCCTGAGGGATGCACTCATGCTGGACTAAAAGTTGGGGGGGGAGGAAGATAAATTAGACTTCAGTCTCCAGATAACTCTAC----CTTTTTCACCATGCCAAGCCCATTTCTTACCACTCAATTCTCAAAGTCTAGTATTTACCTGGTTCTTGCCAACTTCCAGACCCATTTTACCTCTCTCTGCTCAATTACATTCACCTCAAAATCAGA----CTCTCCTAATTCCTCCTAGCTTTAGCCTCCTCCAGATCTAG-GCCTTCCC---AGTCC------TAGTAACAAACCCCTTGCATCTACCAACCGCTCACCTTCAATGATCCTAGCTCTGTCCTTATTTTTCTTAATCTGTAACAATTCATGACATTTGAATACCTGCCACAGACCACTTCTCCTGCTTAGGTTGCTATACTTCG-GGTCACGTAACTACTACAACCCTGGACAAAATGAAGGACTTGGTACCTGACCCAGAAGCCAGTCATCTCTAAACCAGTCATAGAGGTTTCCAGAGACCACAGTTGGCCTGGCCCAACAGAGGGAGACTACAGGTCCAAGCAGGACCTTTCTGGAAATTTAAAATTAGAAGTC-AAGTGACAAAATTAAAAATAAGCAGACAAGAAAA---GCCAGTCACAAGAATGAATGGCAGACCTGGAAGTCACTTTTGGATCATTAGCACTTTGGTGCTATCACGAAAGAAAGAATAAGCCTGTATAAGCCTCCTCTAT--CCAAAATTGTTTTTGATACTTATCCCCTGATTT s canFam2.chr12 4044568 1286 + 75515492 AGACTGCTGGTCTACAAGTCTTCAATGTCTCCAACTCCCCACACTCTC----CCAGGT----TTATCTTGGCTTACCTTGACATTGGGCATGTATTTAGAGAAGCGCTCATACTCCTTGCTGATCTGAAATGCCAACTCCCGGGTGTGACACATCACCAGCACAGACACCTTGGGTGGAGGGGGGAGTACATGGAGATAAACAGTATATAC------TTACTATCCCCTCTGGGGAACCAACTGTCACAAAAGCACATCTGA-CAGATCATAAATTACTTCAATTCTGAGATCTAAACCATTAACCCCATGATTACTATGTAATATCCCCCAGGGCCATCAG----TCAAAGGTGACAGAGTTCATCTTAGCCACAAACACTCATGGCTCTAAAAGCATCACACAGCTGAGACAAAA-CACCCTTCTCCAATATTCCTAACCAAAAATGTCTTCCATAGCACTCTCCCCAAGTGTACCTGTCCAGTAACTGGCTCCAACTGTTGTAGTGTGGCCAGCACAAACACTGCTGTCTTTCCCATCCCTGACTTGGCCTGGCATAGGACATCCATTCCCAGAATGGCCTGAGGGATGCACTCATGCTGGACTAGAAGCAGGGGGAGAAAAAAGATAAATTAGACTTCAGTCTCCAGATAACTCCACAACCTTTTTTCACCATGTCAAACCCATTTCCCACCCCT----TCTTAAA--------------TGGTTAT---CAATTTCCAGACCCCTTCTACCTCTCT--GCTCCCTCAGATTTATCTCAAAACCAGATAGACCTTCCTAGTTCCTTCTAGCTTTAGCCTCCTCCAACTCCAGTGCCCTCCCCCCACCCCACAAACTGCAAACAACCCTCTTGCACCTACCAACAGTTCACCTTTGGTGCTTCTGACTCTGTCCCGACTTTCCTTGATCTGTAACAATCCAGGACATGTGACTGCCTGCCCCAAGCCATTTCTCCTACTTAGCTTCCCTTGCTTTAAGGCTACAAAACC-TTGCAACTCTG---------AAGGGGTTGGTAGCTGATCCAGAAGCCACCCATTT-TAGACCAGCTATGAAGATTTCCAGAGACCAGAGGTGGCCTGGCCCAACAGGGAGAGACTAAAGGTCCAACCAGT-CCTCTCAGGAAATTCAAATTTAGAAACCTAAACAACAAAATTAATAACAAGTAGACAAGAATAAATGCTGGTCACAAGCA-------CAAACCTCTAAGTTGCTTTTAGGTCACTAGCCTTTTCATGTTATCGTGAACAAAAAAACCAATCTATATAAATCTTTCCTACTGCTGAAATAGTTTTTGACCTTTATTTCCTAAAGT a score=101112 s hg19.chr6_ssto_hap7 2838797 2467 + 4928567 AGCCTTAAGTATAAACCCTTACCACCACCTGAGCAAC-GACAAACACATCTTTGTATTGTACCCTTAAAGAGCCCAATGAGCACTACATGCCCAAGAGAAAATTTACCTTCTGACGGATGCTCAAAGCCACAGTCGACAATGGCCCGGAGCAACTCTGGCTTGAGCAGGAAGTCACGAAAGCCAGAGCTGTGGATGGAGACATAGGAGCCCTTGACATCCTTCTTGGCAGGGGCCTCAGCCCCATCTCCCCCAGCTGCTGTCTCCACCTCATCATCTTCATAGTCCAAGAGCTCATTGTCCACATCGTTCTCTGCCATAACTGGGCCGGCAGGGGAAGAAGGGAAGGGGGATCTGGATGGGTTCTCGCAAAATAGGTGAAAACAAGGGGTGAAGAGTAGGGGATTGAGGAACAGCAAAGGAAAACAAAGATACT---ATTTCTAACAGAAGAGCTGGAGGGGGGAAAAAAAAAAGCAAGACTTA---ATCACGAGCACAGCCTTCACCACCTCTTTTCCATCCCCAG----TTCCCACTTTCCCTAAACCAGgaaacttttacctggaaagaaaa---acag--atacaaaacataaaaacgaaaagcaaatataacagaacagaaaaagcagtaccagggaaagtggttaggacagaggttcccaacaagattagcaatcacagtagcggaaaccagaaaagttggaaggggaagaccaacttataaattcttgatctgaaagtaacagtgaggaaatagaatagataataaaaGGTAAAATACGACTAATAACTTAGTAAAGTGGAAAATGGAGATGACAAGTAGAGTCCTGAAAAGTCCTCAAAGGAAGACTCCGCTTTCCCTATTATAATCCCACCGTTATGGATGCCTAACTCAGCAGCCATCAGTCAAGGGTGATAGATGAGGGTCATCACTGCGCAAAGCGCTCACCTTTCGAAAAGAAAACATCATATGGCCGCCGTCCACCTCCCATAGCTCTCAGCCTCCCACTTCTCAGTATCCTCCCTTCCGCTGTTTAAGCAAGCCTTGTGTAATTAGCATGGGGGGGAGGGGCGGTGCAAGACAAATGGCTCGGCCACAAAAAAACAAAATTCATGTCTCCACCCTACAATAAGAAAGCTAATAGGTGACAGAGAAAGGCAATCCCCGCCCAGGCTTTAACAGGATCTTTACCAAGTGGTCTCACATCACTGTTACGCTACGAAGGTGAGACTCCTTTTGGAGAAACATACAATGACACCAATCGTATCGTAAACACTTGGAAGGCACTCCAAATTAAGTTGGGCAAGTCAAGGTGAGAAAAATCCAACTGGGCCCAGAAACCAGCTCCTCCTCCCAGTCCCACCGAGGGCCGAGAAAGAGCTCAAGAAAGGACAAGGAAGGTGAGAAGAGCCCCGCCCTCCGCAAATACCA-AGACCAAGGGACGCCGAGCGCCGCCTCTCATTGATGCTGAGGCCTCCAATATGAGAAGAACCCATTGGAAGAAG---GGAGCAAAACGAACACAATGGCGCCGAGGACACCATCTTGGATTGGGTCCCCCCTTAGCTTCCCT--TCCTTCCCCCAGGAGCTCTTT---GCTCTCGAAAGGGATGCAAGCTAAGGAAATAGCGAACCAACTAGGCCCCAGCGACCAGACCATCGCCTGTGAAAAGGGTATCAGGAACCCATGTGACGGGATGGGTGCGGAGAAGCGCAGATGGAAACGGATTGTAGCGAAGGCCAAAGCTTACCTAAACAGGGAGAGCGCGTATGGCGGCAGCAACAGCGACGAAGGAGGGAAATCTGCCTTCACTTCCGGTTGCAGGCTTCCCTCTACTCCAGCCTCCCGCCTTCTTGGCTGCAAGAGCGCAGGCGCAAGGGACCGGAAACAGGGCCTTCCGCGGTTATACAGATCCGTGCGCTCCAGGCTTGCCTTTGGAAAATGCCTGTCTGAAATTTGTTTT----AAAACCGTTTCTAACTTCACTGCTACCGCCAGTAACAAAAGATATAAAGGAAACTAACGTCTCCCCCCCACTGTTATCTTTATTCTCTTATCCTACTCCTCTCCATGCCCCTCATCTCTTCGTTTAGGTTTTTGCCACGCAGGTCTTCTCTGTAGGCACCCCTCCATGGATGC---GCGAGGAACGAGTGTGGCGAAGGCTGCGAGTTCCCACGGGGTCCTTGGCCCGGTAGTGAAGGTGACCTGAGGACTGCTGGGCACGCACTAGGAACCGGCAGGCCCTAGCTGAGGGGAGGGAGGAGGGAAGTCTCAGGGAACTGGATTGCTCGGGGGTGTTTCCCGACTCTTTCCC-AGTCGTGGGGCTGGTGGGCGGTATTTTCCCAAAAGGATGCTGTCCGAGGTAGCTGATGCCCTAGGGCCAG------TGAGTCAGGAAGGTGTTCTGAATCCGAGCGGGAAGACGGGGTCTGGATTCGGCCCCAAGTGTTAA-------TAGTAGGGCTTGAGGGTTATACTACATTCCATTAATA s canFam2.chr12 4045854 2343 + 75515492 AGCCTAAATAAGAA--CGTTATTACA--TTAAGTGACTGTTTAACACACCTTTTTCTTGTATCCTTAGAGAGCCTAATGAACACTA--TGACCTGCAGAAAATTTACCTTCTGATGGATGTTCAAAGCCACAGTCAACAATGGCCCGGAGCAACTCTGGCTTCAGCAGGAAGTCACGAAAGCCAGAGCTGTGGATGGAGACGTAGGAACCCTTGACATCCTTCTTGGCAGGGGCCTCAGACCCGTCTCCCCCAGCTGCTGTCTCTACTTCATCTTCTTCATAGTCCAAGAGTTCATTGTCCACATCATTTTCTGCCATAACTGGGCCGGCAGGGGGAGAAGGAGATGGGTCTCTGGATGGGTTCACGCAGAATAAGTAAAAACA-GAGGAGGAGAGTGGGGGCTGGAGCAACAGTTAAAAAAAA-AAAAATACCCTAGTTTGTGATAGAAGAGCTAG----GAAAAAAATAGATGGAGGACTTATTAGTCAGGAGCAGAGCCTTCGCC-CTTCTTTTCCATCCCCACACTCTTCCCACTTTCCCTAAACTGTGACCCCTTTACCTGGGGATAAAACTAACAGGAACACAAAACATAAAAGC-AACAGCAAACATAACA---------CAGTGGTCCCAAGTGAGGTGGTTGAGACACAACTTTTCAACAAAATTAG-GATCAGAATAGCATTAAGCAGGAA-GTAGGAAGGGGACAACCAGCCCATGAATTCCTCATCTGTAAGCAACAGTAATGAAGAAAAACGGGTAACGAAAAGCAAAGTAGGAC---------AACGGAGTGAAGAATGGAGATGACAAGGTAAGTGCTGAAAA-TCCTCACAGGACCTCTCTGCTTTCC---TGGTAATCTC-------------CCTAACAAAGCAGCCATCAGTTACTGGTGATAGATTAAGGTCATCCTAGCGCAAAGCGCTCACTCCTCGAAAT---AACATCATGTGGCTGCCATCCACCTCCCA-----------------CTCCTCAGGAACCTCCC----GGTGTCTAAGGGGTCCCCGTGTAAC------GTGGGGGAGGGG--ATACAGAAGACGTGGCTGGGACGGGAAAGTAC-----TCGTCTCTTCTCCATAGAACGAGAGAG------------------AGACAGCATTCGCTCCAGCTCTACCAGGAACTATAGCAAAGGGTCTT------CTGTTACTCCTC--AGATCAGACTCCTCTCCGATAACCG-ACA-TGACACCA--CG---CATGAACAAGTGGAAAATGTTCCAAGTGATGGTTGGTGAGCTCAC---AGAAGGGTCCAACCAGGCTCAGTAGTCGGCTCCTCCTCCAGTTCCCACCTTGGGCCATTAAGAGGACCCACAGAAGAGAGGAAAAGTGAAAGGAGCCCCGCCCTCCGCAAATGCCCTGGACTAGAGGACATCTA-CGCCGCCTCTCACCATAGCTAGGGCCTCGGATAAACGAGAAGCCCAAGCGAAGAAGCAGTGAGCGAAGGGAACACAATGGCGCTGGGGCCACCATCTTGGATTGGGCCCCC---TAGCATCGCTACCCCCCCCCCCAGAAACTCTTAAGAGCTCTGAAAAGGGATGCAAGCAATAGAAATAATGACCCAACTAGGCCCCAAGGACCAGACTATAGCCTGTGGAAGGGGTATCAGGAGTCCAGGGAACAGGATGGCCGCAAAGAAACGCAGATGGAGGCGGATGATACCGAAGGCCAAAGCTTACCTGAGCAAGGCGAGCGCATATGGCGGCGGCAGCAGCGACGAAAGAGGGAC-TCTGTCTTCACTTCCTGTTTTCGCCTTCTCTCT-CCCAGGCGCCTCGCCTTCCCGCCTGCCAGCACGCAGGCGCAGGAGACCGGAAGAAGACCCTTTCA-GATTCGAGAGTTCCGCGCGCTCCGGGGTTGCCTTTAGAAAACGCCTGTGTGAGTTTTTTTTTTTTTAAAGGCACTTCTAACTCCTTCGCTACTGCAAGTAACAAAAGCCTTGAAGGAAACTAGCATCGTCTCCC-ACTGTTACCTCTTTTCTCT-GTCCTCGTCCACTCCGCGTCCCTCACCTCTTCCCTCGGGTTCTTGCCG-GCAGGTCTTCTCTCTGGTCACCCCTCCGTGGGCGCCCCGCTCGGCAACAGGCTGGCGG-GGCTGAGAGTTCCCACGGGGTCCTCCGCCCGGTAGTCAAGGTGACCGG--------CGCGTCCTCGCTGGAGCTAGTCTGACCCCAGCTGAGGGGAGGGAGTG----AGCC----GGCGCTG---CGCCCGCGGGTCCTCCCCTACCCCTTCCCCAGCGGTGGAGACGGTGGGCGGTGTCTTCCCAAAATAAT-TTGGCCGGTGTAATTGA---CTGATGGGCAGGAAATTCGAGTCAAGAAGGTGTTCTGCAACCAA---------CGGG--TTGGAT-CGTCTCCAGGTGTTAAAAATAAATGGTAGGACTCGAGGGTTACGCAGTATCCCATAAATA a score=24515 s hg19.chr6_ssto_hap7 2841555 621 + 4928567 TTAATTCGAGCAGAATGTTCTTGGCCCCGCCCCAA------CAGCCCCATTGTTCAACCTGGATTTTTTTCCTGAATGAAACATTTGCTATCCCCGTCTTTGAGATGGGGAGCTACAAAAGTAAGACCTGATGTCCTGCTGTGTAATAAAA----CAACAAACGTTTGGCCCTCTCCCtgttaacatacttaatcatttaatactaaggagtaggtaccgttattctcatcttattgacagaagcgaagcaaagcaacatatctcaagcagta--cggctggtgaggttaca--gccaggatgcaaacATCTCTCATTCTCTATTGTATTCTGCCTCCCTGCTCAAAGAATCTGGTTAGTAAATACACTGCAGGTTACCTTATTGGTTCAAATTCT-----TGGTGAAGTAAGC-TTGTCTTCAGTGACAAA----------TGAAGTAAC--TAATTCAAGAATGGTGTCATAGAAGGT--ATTTTCCCAA------GTATCATttaatttattcaaaagtatttatcaactgcctcccttgtgccacatgttgtcctaggatctggggacacaacggtgaacagccctgttctcacagtgtttacattacaggaaagaaaacacataaacacaaatataatgtcaagtatcgataagtg s canFam2.chr12 4048197 621 + 75515492 TTATTTCAATCAGAATGTCGCCAACCCCGCCTCCAGCAGGCCAGCCCCATTATTCA-CCTTGAATTTTATCCTGAATGAAACCTTCGATACCCCCGTCTTTGATATG-----CTAGATAAGTCAGATGTGATGTCC---------ACAAAAATGACAGCAAACGTTTGGCCCT-------TGACCAcagttaatcatctaacactaaggaataggtaccattagtcccagcctgt---aacaagcaaa-cgaagcagcatgtccaaagtaacaaacagctagtaagctgacaaagccaggatacaaataccttttgttctctattatatcctgcctctctgctGAAGGAGTCTGGTTAATATTTACACTGTGGATTACCTCATTGGTTCAAGTCTTCGGTCTGGTGAAGCAGGCATTGTTTTCTGAGAGAAGACACCGTGTCCAAGAGAACGGTGACCCAAGAATCGTGTGGTAGAAGGGCGGTTTTTCCAACCCTAAGTatccgtcgatt----caacagtatttatccactgcctaccttatgtcgagtgctaacctaggatctggagactca---gtgaacagccctgtcatcacagagtttccactccagggaagaaaacaaataagca-------aatgtcaagtagtaataaatg a score=11150 s hg19.chr6_ssto_hap7 2842466 215 + 4928567 gaagaaaatgcaaggtaaaggggCAAAGAGCACTTGCTCCTACACTCCAGCTTTTCTCTACAGTTGCGATCTATAGTCCTCAGATTCCCAAATGAGGAACCA--TGTTTCTCACTTTAGAGAAATAATAAAGTACTACTTGTTCTTGTTTCTCCAAGAAGTTTCAAAGGATAGCCATTTGGGCTGTTTAGGGAATATGTAAACAAAAAACAAGAAAG s canFam2.chr12 4049013 213 + 75515492 gaaagaaaaataaagataaggggcaaagagcgCTTGTTCGGACACTGTAGCTTTTCACTACAGTTGCCATCTATAGTTCTCAGGTTCCCAA-TGAGTAACCACATGTTTCTCACTTTGGAAAAATAACA---CACCAGTTCCTTCTGTTTTTCCAACAAGTTTTAAAGAACAACCCTTTTGGGTATTTGGGGAATACATAAATAAGACACGAGAGAG a score=208643 s hg19.chr6_ssto_hap7 2842990 4564 + 4928567 GTGACTGAAAATGAGAAATGATGAGGCAAAAGGAGGCTGCTTCAACTCACCAATTTATTTGCCAATAATTATTTTATTGATACTTTTTTTATTGTTACAATGGGAAAGTAAGGTGTCAAGGATATAGAAAGGAAGGGCATGCATATGAGGGAACACAGTATCATTTTAGATCTTAGAAAGCAATGAGCATCTGATAAGTCTTTGGGGAAATAGGAAAGGAGGAAAATCTAATAAAGACAAAGATCAGCAAAAGAAAAACAAAGAGAGGCTACAAAATGCAGTTATCTACCTGGAATTATAAGAGAGGGGCTAAATGTAGTCATCTCCTCTTTTTGGAGATCAGAAGGTCTCTGGGAAAAGAGAAG-------AACCAATTTTTCAGAAAATAACTAGGGTCACAGAATGAACAAGTGGAATTAGAGAGCCAGTGATGGACGTGAGGAAACAGCTGTGT--AGGTTTTGACCAGTGAGCAGGTGGTGGTAATAGTatcacagggttgctacttactgaatcactgctacaacatgcaaggaactgtgctagac------tttacagaatgattcctaatcattgaagcaaccctcacaaggtagg---------------------cattattatcatcccagtttcacagaggaggacatcgaggctaccaagttaagtagcttgtcctggtttcacagccagcaagtgacagggtcaagagagggacccacatcggccagacactgaagtcaggatgttttccacATTCCTACTTCCCCATATTACAAATTTCACAGAGGGTTTAGGTGAGAATGACTTGGAAGTTTACAAAGTCCCAGTGAGGGTTAAAGAACAACAAGGAGATTCAGATGTGAGCAGGATATTT--ATAAGTGTCACAGGAAAATTATTGGATCCTGCCTCCCAGGATTTCTAGGGGATGGAAAGAAGA-----------CAGGGATTATGGTGGGAGGTGATTTTGATTGGAGGATTTCTTTGAGGGAGGGAACTGGCAGA-AGGAGTCAGGCCCTACGGTGG-CCCTAGGCAGAAATCCGGTAGTTGGGGTGGACCTGGGGCCTGACGTCGCAGACCATGCCAAGAAGCTGGGCCAGGACACGCTCTCGGTTTCTCTGCTGGGAGCTCTGCATGCCCTGCACCTGGCGCCTTGTAGCCTGCTCCACCTCAGCAGACAGGTTCCCCTGGGAGCCCATGGCCTGGGGGG-TAGGGAGAGGGGTGGAAGAGAGAAAGGGAAAAGCAGAAAC-----AGACAAGGGTCCAGGCATATGAGGGGAAAGATCCTGAAACAAAGCCTAGAAGAAAGGCCCTCTCAGAAACCACCCCCATCCCACAGAAATATCCCAACACCAAAGAGATCAACACAGTCCCCTTTCCCCTTAGACCTAACATGCAACTTCATCCTAAAACAGACCGTAATATCCCCACCACCTCACCATCCATGACCATAAAACTCTACCCTCCACCACAAATGTTAATCATACTCCACATAGATGTTATACTTTACACAGACTGTGGCATTCCGCCCACAAGCTCTATGTGGCCTTCAAAACTCCCAGACTCTCCTACATATCATCACAAAGTTTCACCAATGTTGTGGTCCCTGCCAGGGTCCCCTCAGCCTCAGCCCTCTGCCACCATATTTTCTTGTTGAGTCACCCT-TACACACCTCACTAGATGCACCCACCAACTTGCA--GTGGGGTCTCAACCCGACTCTGCCTCAACTCACCGCCTGCTGCTTGCTCTGGAATTCGTGCTCTCGCTCTCTGCGGTATTGCTCCACCTCCATCTGTGCCTCCTCCTTTGCCTGCTTCAGTCGCCGGGCCTTCCCTGGAGGCAGAAGAAAGGACAGTGAGTGGGGATGGACCCACACACACACAATGTAATAGCAGGAGTCAGTCCCTTCCAGAAAGTTATACAGCCTTCTCTCAGCCAACCAGGTGCCAGATTCTAATATCCATCCATTTCTTCCCTCCTAACCAGCC-TCCAGACCCTAGCTGTCTGTCTTCCCGCCAGCCTTGGGTTTTCCCA-------AAATGTTTGCTGTCCCCCACC--CCCAATTTTCTTTCCAAACTCCTAAGGGAGGAAAGAGGAGACTCACTCTTTCTGGCATCTGCCACCTTCTCAGCTGCCCGCTTCTCAGCTTGCAGAAGCTGCTGGATACCTTGGGACTGACTGGCCATTTCTGTTGTTATGGCCGATGCTGTTTTGAATGCTGTCAAAGTACCAGATGGCTCCCACCCCCCACCGCT-------------------TACTTCTCCTCCTCCAGCTCGTTGCTGCAGTCCTCCACTACCCCTGGGTCTTAGTGCTCCCCTGCTC-ACTCAGCCTCCTGCACCGAGTGTCTCTCCCAATCTCATCCTCCTATTGATGACTGGTCCTCCTCTCCAGCACTTCTTGCTCAGGCAGTACCCAAAGGGGCCGCCTGGGAGCAGCAGAGACCAGGCCCAAAGCTGCGGGCT-----TACAACAGGTTAGCCA-----TCCCAGTCGGAAAGGTCTAGGGATGAG-GCAGGGGCGGAGACGGGGGAGTACTGAGGTGAGAGAAGGAGAACTTGATTGGTGGTAACAGAGGAAGCATAAAGGG-TTGTGAATGCGGTGAAAAGGTAAGGATGTCATCATGCAACCTGTGTTGGGAAAAGAGCATTCTGGGCTTAATTCTAAACTAACTCTCTACCTTTCTCTCTCTCTCCACCATCCCGCCCCCTCCCCTGCCTCCCGTTGTTAACATCTCCATCTTTTTCTACATATTTCTCAAGTCCAAATTTTTGCATCTCACT---TGCCCCATCCTACGATAGTCTTCTTCCGTCTTTTGTCTGTATTTTTTCTTTTTTTTGATCTGTCCCTGTTGTTGTCC-CACTGTGGTTTTTGTTTTTGTTTTCCATGTTTAATGTGATTTTTATCCTGTCTTTATCTCCTCTATTTTCTCTGTCTTCTCATCTTTTCGTCCATCACTGAACCATCTCCTCTCTCTGCCAAGTTAGAGGAGGCGGGAAAAAACCTCCAAATAACTCTCTTT-TCTCCCTCCCCTCCCCTCGCCTCCTTTTCCTCGCCTCCAGTCCAGTCTTCTGGTTTCAGACGGCCCCTTTAATTTAAGTTCCCTAGTTTCCCCTGGGAGATCTGGCCAAGAA-----------------CTACCCGGTCGGGGCGGAACGACATCCGGTAACGCCCCTCACAGTTCACTTCCGTCCTCCACCTGCGTCTCTGCTTGCGCCATTTCCTCCAGCCTGGAGTGTCTCCGCCCTTCCCGCCTCCCGTCTCCGAGCTTCTTAAACACAGGCCTTGGGCCTACGGCTCTGGGGGTACTTGGGGGGGCGGGGGCAGGTCTGATGAGTAACCCCTCCCCCCAGGTTCCAGAGGAAGAAGCCTCCACATCTGTCTGCCGGGTACATGATATTCAATTTCTAGATCATTATTGGAGATTATCTGTGACTTTTTAAAACTCAGATTTCTGCTGATAAAAATTTTCCCCATCCGGCCCTGTTGGGTTTTTTTAAAGTTCTTTGTTAAAAATTAAAAATTTACCTGGGCTCCTGAGCCTTAAACCAATTATTTACCCTTTTCTCGAATTTTACATTAAAAAAATTAAACCTCTGATCCTATCACCCCCCTCAAAAAAAATTTTTTTTCAAATCTATCATCTGATAAAGGATCAGGGTTAGGTTAGGCCTCATCTCTTGCTGAAGATATTAAAAAAAGACGGAACCAAAGGGAGAAACAACAGGGGATGTCAGAGATGGAGGGAGAAGGACCAGCCAAGGCTGAAGTCCTGACTGCTGCCTTTTTTCCTTC---CCCAGCCCAAGAGTTCCATGGCCTCCACTTCCCGCCGCCAACGCCGAGAACGTCGCTTTCGTCGTTACTTGTCTGCAGGACGGCTGGTCCGGGCCCAGGCCCTCCTCCAGCGACACCCAGGCCTCGATGTAGATGCTGGGCAGCCCCCACCACTGCACCGGGCCTGTGCCCGCCACGATGCCCCTGCCCTGTGCCTGCTGCTTCGGCTCGGGGCTGACCCTGCCCACCAGGACCGCCATGGGGACACGGCACTGCATGCTGCTGCCCGCCAGGGCCCAGATGGTGAGTCTGCTCAGTGGGGAACAAGGTCATAA-------------------------------------------GCAGCTG--------------------------------------------------------------ACCAGACC--------------------------TGAAATGAAAGCCAACCAATAGTTGAGAAATAAGCTGGTTATTTGGTCATCAGGACCTAGGGAAGGAGTTAACCAAGTTGGCATGTGGCTGTCATTTGTCCCTTTACATTACTGAGCTACCATTGTCTGAAGAACCCAACATTCCCCAAAGATCAACTGGTCTTCAAATTTCACATCTGTTTAGATTAGTAGCTACTTTGTTTCTTGACAGATTGTTTGCTCGTAGC-CAAAAAGtagcatagaaggtaggctctggagttagattgcctggattcaaaccccagctccaaatcccagctccacacttcatagctacgtattcttggacaggttact-------tgaggcttagtttgcccatgtgtaaaaattaaaataataacaacctttgc----tatgtgccagacatttcttataaagtaacacatttaatcctcacaacaatcttaggaggtgagtactgatattatcccccatttcccagctgaggaaacag s canFam2.chr12 4049227 4421 + 75515492 GTGTCTGAAAATGAGAAATGATGAAGTAAAAGGAAGCTGCTTCCACACACAAATTGATTTGTCCATAGTT-TTTTATTGACACTTTTTC-AGTGTTACATAGGGGAAG----GTATTGAGGATGTAGAAAGGAAAGCCATGCATACAAGGGAATGCAGCATCACTTTAGATCTCAGGAA--AGTGAGCATCTGGTGGGTCTTTGGGGAAATTGGGAAAGAGGAAA-TCCAATAAAGAGAAAGACCAACTTAGAGACAA--AAGAAAGACTAAGAAATGTAAC-ATCTTCCTGGAACCATAATAGAGAGGCTAAACTAGGTCTTCATTCTTTTTCATGGACCATATAGTCTCTGGGAAAAGAGAGGTGGGAAAAACTAATTCTTCAGAGAATTACTAG---TTCACAATGAACGAGTAGAATTAGAGAGCCATTGACAAACGTGAGGAAATAGCTGTGTTTAGGTTTTGGCAGGTGGGCAGGGAGTGGTAATAATatcatagggctgccatttaatgaatcacaactattacatgccagagaccatgctacgcccgccctttacagagtgattcttaagcattgcagcaaccc-catgaggtaggtatcatcattattgttatcatcatcattagcattccaatcttgtagaggaggacactg-gactac-aggttaagaagcttatcctgtc-------ccagcaagtggcagggttaggaaaaggaccaaagcctgccaggctctgaagcccaagtgctttacatatccctacttctccatgctgcAAATTTCAAAGAGGGGTCGGGTGAGGGTGACTTGGGAGTTTACAAGTTCCCATTGAAGGTTAAAGAACAATAAG---ATTCAGATCTGAGCAAGTTATCTTGCTAAATTTCACAG---AATTATTGGATCTTGCC-CCTAGAATTTCCCGGGAATGGAGAGAAAATGAGAAAGAACCAGTGAAGATGGTGGGAGGTAATTTTGATTGGGGGATTTCTTTGAGGAAGGGACCTGGAAGGGAAGAGTCAGGCCCTGCGGTGGATCCTAGACAGCAATCCGGTAGTTGGGATGGACCTGGGGCCTGACGTCGCAGACCATGCCAAGAAGCTGGGCCAAGACGCGTTCACGGTTTCTCTGCTGGGAGCTCTGCATGCCCTGCACCTGGCGTCTGGTAGCCTGTTCCACCTCAGCCGACAGGTTCCCCTGGGAGCCCATGGCCTGGGGGGATTGGGAAAGAGATGGAAGAGAGAAAGGCAAAAGCAGAAAACAGAGAAAGAAGGGTCCAGGCATGTGGAGGGAAAGATTCTGGAGCAA--CCAGGAAGAAAAGCCCTTGCCAAAACCATCCCCATCCCATCAAAATATCCAGACACCAAAGAAAGCAACACAATTCCCTTTCCTCTGAGACTTGACATGCAACTGCATCCAAAAACAG----TAAAATCCCCTCTACCTTACCACACATAACCGTAAAACTCTGCCTTCCACCCCAAATGACA-TCATATTCCATGTAGA------------------CAGTGGCAATCCTCCCCCAAGTTGTTCAATTCTTTCAAAACTCTCAGATTCTCTTA-------TCACACATCTTTATCAATAATGTGGTCCTTGCTAAGGGTCCCTT----TCAGCCCTTTATCATGTTATTTTCTTGTAGAGCCACCCTGTACACACCTTATCATATACACCCACCACCTTGCACCTTGGGGTCCCATCTCAACTTTCCCACAACTCACCGCCTGTTGCTTGCTCTGGAACTCCTGCTCTCGTTCTCTGCGGTACAGCTCCACTTCCATCTGTGCCTCCTCCTTTGCCTGCTTCAGACGCCGGGCCTTCCCTGGAAGCAGAAGAAAGGAGGGGGGGTGGGGATAGACCCCCTAACAC---------------------------------------------------------------------------------CATCCATTTCTTCCCTCCCAATCAGCCATCCCAGTCCCAGCTTTCT-----CCCACCAGCCTTAGATTTTCCCAGGGACTCATATGTTTGCTGTCCCCCCCCACCCCAATTTTCTTTCCAGACTCCAAAGGGAG-----AGGAGACTCACTCTTTCTGGCATCTGCCACCTTCTCAGCCGCCCGTTTCTCAGCTTGCAGGAGCTGCTGGATACCCTGGGACTGACTGGCCATTTCTGTGGTTATGGCTAATGCTGTTTTGGATGCTACAGAGGTACCAGGTGGCTCCC-CCCACCACCACTACACATGCACCCTCCGAAGTCCTCCCCTTCCACCAGCTCCTTGCTGCAGTCCTCCACTACCCCTGGGTCTTAGTGCTCCCCTGTTCTGCTCAGCCTCCTGCACCAGGTGTCTCCCCCAAATTGATCCTCCCATGGATGGCTGGTG-TCTTCTCC-----CTCTCGCACCGGCAGTACCTAGGAGGACCACCTGGGGGCAGCAGAGGCCAGGCCCAACGCTGCCCGCCGCGGGCACAGCAGGT--GCCGCGTTTTCGCCGTCGAACA--TCCAGGAATGGGAGCAGGGGCAGAGAAGAGTGAG---------------------------------------AAGGGGGCATAGAGGGGTTGAAGATGGGGTGACAAG-TAAGAAAGTG-----------TGTCTTGGGAGAAGAGGATGCTGGCTTT--CTCTGAAtt--cttcctatttgtcttccttttttcgctctccctcccgtttcctt------------------ctctctttttttctACATATTTCCCAAGTCTAA-TTTATGCATCCATTTCAATGCCTTCTCGTACGGTTGT----TTATGTCTTTCACACATG------CCTTTTTTTTATCTGTCCCTGTTCTTGGCTTCGCTGTGGCTTGAGTTTTAGTGTTGCGTTTTCACTGTAATTTTTA----ATCTTT-TCTCCTCCGTTTTCTCT----------CTTTTCGTCTATCGCTGAACCGTCTCCTCTCTT--CCCGGTTGGGGGAGGGGAGGATACAT-------TAAGTCGCTGTGTCCCCCCCTCCCGTGCTCGGCTCCTCTTCCTTGTCTATGGTCCAGTCTTCCGGGTTCAGGCGGACCCTT-ATCTTAAGTTCCCAAGTTTCCCCCCG-AGGCCAGACTGAGGAAACACACACACACACGCCCGCCCCCTCGGAGAGAGAGGACATCCGGTAGCGC--------GTTCCCTTCCGGCCTT-ACCTGCGTCTCGGCTTGCGCCATTTCCGGCCGCCTAGAGCGTC-CCGCCCTTCCCGCCTCCTTCCTCGGAGCATCTTAAACCCAGGCCTCGGGCCTGCTGCTCCGCGGGTACTGAGGGGGCGGGGGGCAGGTCTGATGAATAACCCCTCCCCCCAGGCCCCAGCGGGAGAAGCCTCCACATCTGTCTGCCGGGTACATCGTGTTCCATTTCTAGATCGTTATTTGAAATTATCTGTGACTTT---AAATTCAGGGTTTTGTTGATAACAATTTTCCCCATCATTTTTCATTCGCCTTTTTCAAAGTCTT---------ATTAAATATT-ACCTGGGCTCGTGAGCCTCAAAGCAATTATCTGTCCTTTTCTCAAATTTTACGTTAAAAAA--------TCTGTGCCCCGAGCCCCCTTCAGGA-----TTTTCTTCAGACCCACGGTGTGGTAAAGGGGTGAGAGTGGGAGAGGCCCGAT-TCCTGCCGATG------------GGGAGGGGCGCGGGGAGGGGC----GGGGATGTCAGAGCCGGCGGGA----------------------CCCTGACCACTGCCTTTCGTCCTCCGTGCGCAGCCCAAGACGTCCATGGCCTCCGGGTCCCGCCGCCAACGCCGAGAGCGTCGCTTCCGTCGTTACCTGTCCGCGGGGCGGCTGGTCCGGGCCCAGGCCCTCCTCCAGCGACACCCAGGCCTCGATGTCGACGCCGGGCAGCCCCCACCCCTGCACCGGGCCTGTGCCCGCCACGACGCCCCGGCGCTGTGCTTGCTGCTCCGGCTGGGGGCGGACCCTGCCCACCAGGACCGCCACGGGGACACGGCGCTGCACGCCGCTGCGCGCCAGGGCCCGGACGGTGAGTCTGCCTGCTGGGGAACAAGGTCGTGACCCGGGGACATGACGGGGAGTCTGCCTGCTGGGGAGCAAGGTCGTGGCTGGGGACAGGGCGCTGCACACCACTGCGCGCCAGGGCCCGGACGGTGGGTTTGCCTGCTGGGGAACAAGGCCACGAGCGAGCCCCTAACTGACGGGGAGGAGATGAAGGCCAATC----GTTGAAAAATCGGCTACTTCT------------ATCTAGGAAGGTAGTTGACCCCATTGGCATGTGGCAGTCGTTTCTGACTTTACATCACTGAGCTACCATTGTCCCAAGAGCCCAGCATTCTCAAAACAGCAA-----CTTCAAATTTCCCATCTTTCTAGATGAGTTGCAAATTTGTCACTTGACTGG-TGTTCCCCTacagtgcaaaaagtgagagagagggtaggttctgcagttaggttgcctgggtt-------------cagatcccagtgccacact---tagctgtgtattcttgagcgacttactaaacttctgaggcttagtttgccctcgtAta------ctattaacagcagctcttgctgtgtatgtgcc-ggtacttctcacaaaacagctcatttaatcgtcacaa-------------taagtactaatattatccctggtttctcagatgagaaaacag a score=10906 s hg19.chr6_ssto_hap7 2847554 263 + 4928567 ggcatagagaagtc-----atttgccagagtta--cagttattcactggtagagcagagattataacccagatggactagatagagtgtccatgcttttaacagctacattgtcctgtgttatacattatagcattgtacattgattgtgcccatgttcagagtacccatgttgtgccatatatgttttgagaatcaactgacatagtacataattagagtacctggcacacacgataagcacttggtatatgctggcgattgttGTTCC s canFam2.chr12 4053852 256 + 75515492 Agcacagagaagttaagtaattggccaaagtcacccagtcacaaagtggtagagcagggattagaacccaggcagcctggctagaccatctgtactcttga----------ggactgttgtatacATTATAGGATTATTCAGTCATAGTGCCCACGTTCACAGCGCCCATGCCAT--CACATAtgtttagagaatcacctgacacaacgtgtaattagagcacctg--acatgtgattagcactcagtagatgctggccagtgttGTTCC a score=2360 s hg19.chr6_ssto_hap7 2848145 39 + 4928567 TGTTATCAAcaggtccatactcccttaaccacaattcta s canFam2.chr12 4054108 38 + 75515492 TGTTATCAACAGATCCATAC-CCTTTACCCTCAGTTCTA a score=13671 s hg19.chr6_ssto_hap7 2848184 298 + 4928567 aactcaaaaaca-ctctgagaacc-aacatttt--tcatcaggctgccaccaaaattcatttggtgacagaaacctaatctgaactaaagtaagactattatttattttcatcctactga-tgtcaatattcatacatttccctgcagaaacactcatgtgtttggtt-cttgggctgcctaggccctcctgggctacctaatatagagtgagtgtacttttaggtcagccctatcaagtcccaaaaacatttgaattctgcaaaacctttggcactgaaggattcaaatggggaaCCTGGTGA s canFam2.chr12 4054365 288 + 75515492 AACTAAAaaacagcactaagagccaaacatttttctcatcagtctgccagc-agacccgtgtggtgaga-aaacccaacctgaactaaaatgagactgtgattcatttttatcctactaattgtcgatatccgtacatttctctgcagtgtctttcatgtgtttggttactggagctgcccaggccct-ctaggctacttaatacacagtgtatgtac-tttagatcagctctaccaaatc-----------tgagttctgaaagacctttgacactgagggtttcagatgggg-acctattga a score=4751 s hg19.chr6_ssto_hap7 2848798 199 + 4928567 TGGTGGAAGCAGCTCTTTATGGGTAGAGCCCTGCTTACTAGAATAAAAGCTGAAACCTTCTTTCCCCATCTAGAGA-TTTCCTTCTGGAGTAAGAACATTACAGGAAAACCTCTAGATCCAGATGAACAACCCTA-----------------------ACATCCCCCAGCTCAAGTATAGACAGAAGGCCCCTC---CCCCAAAA--CTCCCCCAAATGGTCAAAAAA s canFam2.chr12 4054653 204 + 75515492 cTGTGGAAGCAGCTCTGTAGAGATAATAGCCT--TTAGGAAAATAAAG-----------------CCTCGTAGAGACTTTTCTTCTAGAATAAGAACATTAGAGGAAGATCCCTGGGTTGGGATGAACAACCTTACCTCAGTATGATTGCTCCTATTGCCATCTTCCAGCTC----CCCAACAGAA-ACCCCTCTTACCCCAAAAACTTCCCTCATAGAGTAAAAAAA a score=2855 s hg19.chr6_ssto_hap7 2849006 46 + 4928567 TAAAAATTTCCTTTAACGTACCTGAGATAGGCTAGCATATTCAGAT s canFam2.chr12 4055097 45 + 75515492 TAATAATTCCCCTTAACATA-GTGAGATAGGCTGGCATATTCAGAt a score=5285 s hg19.chr6_ssto_hap7 2849052 190 + 4928567 TTGTTTCTTGTTGTTTTTACTTAAAACAGAGTAGGTTTACTGAGTGCAGGCATCTAACTTGACAGCTCATATTGTAAGAGGCAGGACCCTGGAAGGCAAAAGAGCGGATTACCCCGaagcagacc---------tgcatccagaccccagctct-----gccat-caacagggacatgcagctt-acctctgtgagcccaatttgc s canFam2.chr12 4055320 189 + 75515492 TCAATTTT--TTTTTTTAAACTTAAACAGAGGAGGTTTGCAAAATGTAAGCATCTAATTTGACAGCTGACATTTTAC---------------ATGGCAAGAGAGCAGAGAACCCTGTGACAAATCTcagtcctgttcattcagcctctaacacttataggctatgtaccagggacatgcaacttaacttccatgaccctaatttgc a score=1434 s hg19.chr6_ssto_hap7 2849566 31 + 4928567 aaaatgcccctgatagtgtggtagggattTC s canFam2.chr12 4055871 31 + 75515492 AAAAGATCTCTCATAGTATGGTAGGATattc a score=11393 s hg19.chr6_ssto_hap7 2849904 270 + 4928567 CTCCATTGTATTGaattttaagaagctggtgagactgata---ttatcccatttacagatgaggaaagcagggcccaaaaggttcgggaacttgtctgaaatctcacagctctcaggtcattgtcttccaaagggggacccaagctcagtgccttcactcccagaccctggtgtcctctctggccttatttactcCTGGTCCTCTGCCAGCCCTGCCACCAGATGGCCTTCTAACTCCTTGGTTGAAAGGCCCATCTCATTCAGCTTCCAGCt s canFam2.chr12 4055902 255 + 75515492 tttcattatattgacatctaagaagcatatgagatcaatactgttatccta-ttacagaagacgaaa-cagtgtctagaaggttcaggaactta-ctgcaatctaatagccaacaggtTGTTGTCTTC----------CCCGTACTTGG----GTCACTCCCAAGCCTTGGGATCCTCTCAGGCCTTACTTCCTCCTGTTCCTCTGACAGCCATGCCACCAGATGGCCTTCTGGCTCTTTGG-TAAATGGCTCATCATAGTCAGCTTCAAACT a score=24430 s hg19.chr6_ssto_hap7 2853137 556 + 4928567 aaaaatacaaatagccaaaagacatga-aaaagaaaaaaacattgttaataaaataat-tttttaatctatccaactggcaaaattaaaagg---gttgatgatattcaattttggtaaaggaagacataggcacac---------------ttgtatattggcacaaacttattgagagcagtttgaccaaattgcgcatgtcctttgactcagaaattccacttatgaaaatctacccccacagaaagactgtaag------------atactcatgaggctgaacattttttgaaacaaagtctatcgatattggggtaaggagat--ttgttttgtacacacagtggaacactaattataaagtcgtcaaaaagtatgaggtagact-gtatatattcctgtggaaaaatataaatgagatgttaaatgaaagaagcaagttgccaagcaatatt-tgtagtatggttacatatctccaaataaa---------------------------------tgtgtcatatgtatgcttttaggtacaccaaggtgggactggaagggatcacagtacactgttaatagtTATCAAATTTGTTCGTCCTTCTTTAAAAAGAAAA s canFam2.chr12 4057032 611 + 75515492 AAAAAAGGAAAAAGCCAAAAAACGTATTAAAAAAAGaaaacttcattaataaagtcatctttttaatctatctgatgagcaaaattacagggttagttggtgata----atcttggtaaaggatgacacatgcactcatattctttgtaggagtgtatgttggcacaaattt---gagagcaaatcggtaaaatcgcacatgttctttgactcagaaattccacttctgagaatctacccc-acagaaatactgtaaggagtctacaaagacacgtaggaggccaaacatttttggaaacaaagtctcttgac-caggggtggtgagatgtttatttcatacatatagcggaacacta----cacagtcataaaaaagaatgaggtagacttgtttatgctcctgtggaaaaatacaaatgagacatcaggtgaaaaaagcaagttgccaaacaAAAACATATAGCTTGGTTACACATCTCTGAAAAAAAAGTCATCCCGTGTATGCATTTTGTTTGTTTGTTTTTTTCTGGGTATGCATTTATATGCACCAAGACAGGACTGAAAGGGACCACAATAAACTGTTACCAAG-ATTAAATTTATTCTTCGTTCTTTAAAAAGAAAA a score=6726 s hg19.chr6_ssto_hap7 2853693 115 + 4928567 TTTCAACTTAATTATATCCCTTTCACATTAAAATGT----CAAATAAAATTGGGGGAAAAGCCACCTACAGCCCCACCACCCATAGGCTAGAATTTTTACATATTTTTTGCCAGTCTAt s canFam2.chr12 4057831 118 + 75515492 TTTCAAATTAGTTAAATCCCTTTCACATTAAAATGTTACCCAGGTAAGATTGGAGGACA-GCcacccatagtcctaccacccagagactaggatttttacacatttccttctagcctat a score=2870 s hg19.chr6_ssto_hap7 2854119 62 + 4928567 TCTTTTTTTCCAACCATAGGATTTGGTCTCTTGTTTTAGACAGTTATTATCTGATCCTCTCT s canFam2.chr12 4057949 61 + 75515492 tttttttttc-agccataggaattagccccttattttacacaattgtgattggatcctatgt a score=50236 s hg19.chr6_ssto_hap7 2854554 1125 + 4928567 ACAGTTTTGTAGCCAGCTTTTTTCAAACACATGCCTCAGTTGTAGTGGCTGTTTAATATTATGT--------------------TTTTATAGTTGGAGGCCCTACTCCTTAAAACCTATGAATGTAAA--CCTCCCATGCAAGCCTGAGCACTCACCATGCTCACCACCTG-----AGCTCAGGTGGGGAACAAGCGAATGAGAGACAGGACCAGGTACTTTCTGGGTGGGACAAGTTGAGAGGGTCTGTGACAGGTCACAGCAGCACTAGGGAGAAGTGCCCCCCCCCACCAACCCTGATGTGATTTGGGT---------------------------------AGGGATGGTGGGCCTTCGCCAGCCACACCTGGGCCATTCTGTCTTCTTGCCTTCCTGGCCTTG---------CCTTCCCCTATTCCAGCTTTCTGCCAGGTAAACAGTACTTTCCAGCACTACCAAATAAAGATTTAAGGACTGCTAGCCCATTTCCTCTTACCCCGGGGAAAGAAAGTAGGTCCACAGGAAGGAAGGCTGCCTCCCTCCCCTTCTTCTATCCCCCAAGTGAAAGAGGTGGTTGGTGGCCACAGCAGGTGGGCCTGGCCAGG-----ATGCCTGGGTTGGCAGTGAAGGAAGTAGCATGGCACTCAGCTAACCTTGGGCCAGATGCAGCAAGGTTGGGACTGAAGAAAAGGGGAGTTCAGGAACGTCGGTTCCTCTCCTGTTTTCTCTC--------------AGCCCATGGGTGAGACCCTCTGTCACACTCCACTCCCTTTCCCCTGCCCTAGGTCAGCAGTCATTTGGAAAGAGCTTGCTCTGCCGCCGGCCATAGTT---------------GTTGCCGGTTC----------ACCTCCCCACCCCTCTCCCATCATCCCCTG-GTAAGGCTGGCTGAGAGAAATTCCCCTGAAAACATTTATTTTACTCAGTTTATTGATAAGTGATAATAAAAGATAAGTATTACATATTTGTGTATTTATTAATGGCCCAGAGTAGAGCATTCAGATATTTTCCCAGTCTGATATATGGTTTCAGGTGAGAAA----ATAAGGGATTTATATAGTGACAATATTTTTAAGTGAAAAGTGGAATACATAGTCAAAGAATTTGGGCACTGCCT-TGGTGGCTGGAGGCAGGTCAGAAAATGTCAGTTGGCATGGTAGAACTTCTA-------GGATGCTGAAATAGTTTGTGGAGACACAA s canFam2.chr12 4058010 1228 + 75515492 ataggtttttagccagctttttccacacacaaacatcatttttagtggctattgaatattctGTACCATATTTTACTTGCCATGTTTTATAGTTGGAAGCCTTACTCCTTAGAGCCTATGAATTTAAAAACCTCCTATGCAAGTCTGAACACCCACCCACCTTCATACCTGCTGTGAACCCTGTCAGGGAATAAGCAGTTGAAAGACAGGACTAGGTATATGTTGGGTGGGACAAGTTGGGAGCG-CTGTGATAGGTCATGTCAGTAGTAAAGAGACATAGCCCCTCCTCTCA-TCCTGATGTGGTTTGAGCTGGGCAGCACTCAAGTACCAAGCGTGATGAGTGAGGGGCAACAGGCCTTGACCAGCCAAGGTGGGCCCATTCTGTCTTCCTACCTCCCTAGCAGTGACAGGACGACCCTTCCCTTGTCCATCCTTTTGCCAGGTGACCAGTATGTTGCAGCACCACAAAGTAAAGATTTAAGGACTGGTGGCCCATTTCCTCCTGCCCTAGGGAGAGAAAGTAGGTCCACAGGAAGGGAGGGTGCCTCACTCACCTTCCTCTATCCCTGCAGTGAAAGAGGTGCTTGGTAGCCATAGTGGGTGGGCTTGGCCAGGGGTAGAGCACTGGGTTGGCAGTAAAGTGAACAGCTTGACCTTCAGCTTACGCTAGAATGGATGCAGTA-GGTCAGGGCTCGGGAAGAGAGGAATTCAGGAATATCAGTCCTGCTTCTGTTTACCCCAGCCTCCTGTCAGCAAGCCCCTGGGCAAGACCCT-----AAATCTCAGCCCCTTTCTCCTGCCCTACATCAGTAGTCATTTGGAAAGAACTTGATTTGCTGCTAGGAACATTTCTATGGCTTGAACTCGTTGCTAGTCTGGACCCTCATACCTCCTCACCCCCCTCCCAGTATGCCCTGTATGAGGTTGGCTGAGAGAAATTCCCCTGAAAACATTTATTTTACTCAGTTTATTGAGCAGCAATATGTAAAGGTCTCTGTTATTTATTCGTATGTTTAT-AATTGTGCAGAGTAAAATATTCAATTATTTTAC-AGTCTGAAGTACAGTTTTGGGTGAGAAACACAATAAGAG--TTGTAAAGTGACAACATTTTCATATGAAA-------TACATAG----AGGTTTTTGACATTGCCCAGGGTGGCTGGAAGCAGGCTGCAAAATGTCACTTAACATAGTAGGACTCCTATATTTGTGGACACTAAAATTGTTTGTAGGGACGCAG a score=223265 s hg19.chr6_ssto_hap7 2855986 3992 + 4928567 GAGAATATTTTAAACTACCACACTTACCATGCATGTGGTAAACTATCAGTCTGTATTTATCAGTGATGGTTATTTCCTAATACCCAGGAGGCATCCATGTGAGCCACCCTT-CCATTGCTTTAAGACCAAGGGAGTGAGTGACCAGCAGGATTCAAGATGGCAGCTCTGCCGAGGAGTGGGAGTCCCAGCTAACTTCTGCTCCCTGCTCTCCCACCAACAGCCTACACCGATTTCTTCCTCCCGCTGCTAAGCCGCTGTCCCTCCGCCATGGGAATAAAGAATAAGGATGGGGAGACCCCTGGCCAAATTTTGGGCTGGGGACCCCCCTGGGATTCTGCTGAAGAGGAGGAAGAAGATGATGCCTCCAAGGAGCGGGAATGGAGACAGAAGCTCCAGGGTGAGCTGGAGGACGAGTGGCAGGAAGTCATGGGGAGGTTTGAAGGTGAGAAGTCCACTGCTATCCACAGCTGCCCTTCCCCACT-GGCTGCTTTCCATCTGCATGAATGCGTCACACTAGGCTCCTCTGCCCCCTCCTCTGTGCTTCCCTGCTTCTTGGGGCCCATCACCTTCTCACAGCCTCTCTCCAACTACCCCCATCCCACCCTCCCAAACAGGTGATGCCTCCCATGAAACCCAGGAACCTGAGTCCTTCTCAGCCTGGTCAGATCGCCTGGCCCGGGAACATGCCCAGAAGTGCCAGCAGCAGCAGCGAGAAGCAGAGGGATCCTGTCGACCCCCACGTGCTGAGGGCTCCAGCCAGAGCTGGCGACAGCAGGAGGAGGAGCAGCGGCTCTTCAGGGAGCGAGCCCGGGCCAAGGAGGAAGAGCTGCGTGAGAGCCGAGCCAGGAGGGCGCAGGAGGCTCTAGGGGACCGAGAACCCAAGCCAACCAGGGCCGGGCCCAGGGAAGAGCACCCCAGAGGAGCGGGGAGGGGCAGCCTCTGGCGATTTGGTGATGTGCCCTGGCCCTGCCCTGGGGGAGGGGACCCAGAGGCCATGGCTGCAGCCCTGGTGGCCAGGGGCCCCCCTTTGGAGGAACAGGGGGCTCTGAGGAGGTACTTGAGGGTCCAGCAGGTCCGCTGGCACCCTGACCGCTTCCTGCAGCGATTCCGAAGCCAGATTGAGACCTGGGAGCTGGGCCGTGTGATGGGAGCAGTGACAGCCCTTTCTCAGGCCCTGAATCGCCATGCAGAGGCCCTCAAGTGACCCTAGGGAAGAAGCAAGAAACTTCGGGGCTGCAGCCTCAG-GATGAGGCAGAAGGAAGGGTAAGGGAAAGGATGGGGACCACAAGGAAGAGCCAGGTGCTGCTCAGCAGAGGATAT-GGGTGGGAGCGAAAGTTGTAACAAGTGGGGGTGGG--GGGTGCGGGCCGCCACCACTGCTCCTTGACTCTGCCGTTTCCTAATAAGACCTGGTTCCACATCTCACTCCCAGTGTCTCCTCTGTCTTTTTCCATTGCTGTGGTTTTCATCACCCATGACATCTCCTTTCCCGCCCCGCCTGCTGAAACCCACAGCTCCCACACACCTGCAACACACACGCACACGCTAACACGGGCTCTGAGCTGGAGGCAAGAAGCCTCTGCATGCCCCCTCA---GTTCAGCCCTAAGAAGGCCCAGTTTGCCATCCAGTCTCACTCCACTCCCTACACTGGGGTCTTGTCCACCCTGCAATCTGTGGCTGGAGAAATAGATGCGAACAGAGGCAAAAAGGGGAACAAAACCAGTTTCCCTCCCCTCCCTGGCTCCCCAAGCTGAACCACATCCTCCTCCCCACTTAACACCCCCTTCCCCCAACACAGGGCTTTCCCTTTGCTGAGTCACTGAATGAGC-GAGTTGGGGGTAGCCGGCGCTGGGGGGCCATGAGGAGGCTGGGGGAGGATGGGGAATACAAGCAGAATGGCTGGAGGAAGAGCCCT--------GTGGGGGAGTGGAATTTCAGTTGCTAAAATTAGGAGCAGGGGAAGGAGGTGGAAAGAGCAAAATTATGTAACATGGGTTGTCTGTTCTTGGGCAACTGGAGCTCCACACCCAAAGCCAGCCAGGCTGCTGGCTCCATCCATCTCTGCCCTCTAGCTTGTCAGTTGTATCTCTCT-TCCTCCAGGGCCCCAATCCTCATCTCCGCCATTCAGCTGCTGC-CCCATCCTAAACCT-GAGTTCATCTCTGGGCAGCCCAGGCATGGCCTTCCCTATAAACATTTCCTTTTCCAAGAACCAGTAGTTGAAGTCCTGAGAGGTGGAGGGAGA--GTCTGG--------------------------GATTCCCACGGAGGAGAGAGGGGGGCTCCCTGGAAACTAAGATAGG--TAGACCCCACTACCATCGCCCAGGACACAACTGGGAACTTGGCAAAAAGAAAGGACAGGGCTGCAAGGAGAGTACAGACATGTGCTGGTGAGTGCACTGTCTGCATAG--TTACACCAGAGCATCTTATCAATCAGAAACTTATCTTTCAGGTTTTGAGCCCAGTTCTCTACAGGAGAATCCCAGGAGTGGAAGTGGAAGGCAGTAGAAGACAGGGAGGGCACGCCTCTGGGAACACGGGAACAT-GGGTGGGCATGAGATCCTTGAATAAGACAGCCTGAAGTTCGGAAGAGACCAAGGCCTCTGAAGGACCAGGCAGATGTTCAGGGTGCAGGAGGGGGAAGGGCTGGTGAGAAAGATCCTGTGAGAGGAAGCTGCTGTGATTCAGAGAAGAGACTTCAAGCTGTGTGTGACCCTGGCGTCCGGTTCCTCTCACAGGCTGGAGCTTTTCGGAAGTGGCATGCAAAGAGTCCAGGTTTGGCCTTGGGGGGAGTTGGG---------GTTAGGATCCCTAAGCT-GGAGGTTGAGAAGTAAATTACAGAAAACTCTGGTGACCAAATTTGCTCCTCCACCCAGGAGATTTCTCACTGGTTTTTAAGCACATCATTTCCCCTTCTGCAAGAGTTACATAAAACCAAAGCAAAATAAGCCCTGAAACCTGGGCCCACCGGACCACAGTCTTTTCAACGTCCCTTCCTGGTGTCTGGCCCCCAGCCCTGGTGGGGGTTCCCCTGAGATAAGGGCTGTTCACTTTCTCTGACCACATGGTTTCCGCTTCTGTGTCTCTTGTTTCCTAGGCTGATAAAAATACTGAGCCCTAGAGGCCCTGGCTTCCTCTGACCCCTTGGGG-CAGGCAGCAGGCATCCTGTCCAGCATGGTGGGGGCAGGGACAGGGG-CCAGGGATTCCCAAGGGGTGACTCAGTGCCTGCCATGAAACAGTGGGTAGGTGGAAGTGTATCTCTGCTCTCTAGAGCTGGCACCAGGAGTTGAGTCTCAGTGGAG---GATGCATTGGGATTCAATTGGAGGAACAGGCCTGGAA---AAGAATAATGAGATTGAAGAGGGTCAGTTTGAGGACTCAGGTTGGGGCAGGTTTGGATTAAGTTAGGAAAAGGATCTGGGAGGGACTCTGTTCAGTGTAGGTCAACTGAGCATTATGTAGCCcaaagataaatttaaaccctgcttcaagcttacaatctagtgg-ggaggc-agacccatacctagttaactgattcaaggcatgat-----------------gagtaaactttaagatgattacagaaagaggggagattaagtccatttgaaagcatccagggagcctctgaggagacagcatttgaacttgctctaatgaatgggttcactaggtggaggtggatggaaaggttccataggcgaataacacgtcttgagcgagcctgacaagtcagaaaatgcagtatgttctgggaaag--gagcgtcctgagggagaagaagcacaggtgtgagggaacatgtgatgaagaaaggaccacagaaagtcaaggtcagaGATTGG------ACTGCATCCTGTGGGCAGTGGTCCAGGTGACG-------ATGAAAAAGAGGGAGAACAGGTGAGTGC----TGCAGTACAGACAAGGAGTAAGAAAACGGCCATCATCTTGTGAATTAATACCTACTGTGTGTTAACCAGCCCTTTTCCTAACACCACAAATCCTCTCAACGTCTGTCCAAAAGGTGGGTGGT s canFam2.chr12 4059240 3902 + 75515492 TAGAATATTTTAAACTACCATGCTTATCACACATGCGGTAAACTATCAGTAAATATTTGTCAGTGATGGTGATTTCCTAATACCCAGGAGGCTACCACGTGGGCAACTCTTTCCATGGCTCTAAGACCAAGGGAGTGAGTGACCCGCAGGATTCAAGATGGCAGTCCTGCCGAGGAGTGGGAGTCCCAGCTAACGTCTGCTTACTGCTCTTCCACCAACAGCCTACACGGACTTCTTCCTGCCACTACTGAGTCGCTGCCCCTCTGCCATGGGAATAAAGAATAAGGATGGGGAGACCCCTGGGCAAATTCTGGGCTGGGGACCCCCCTGGGATTCTGCTGAAGAGGAAGAAGAAGACGAGGCCTCTAAGGAGAGGGAATGGAGGCAGAAGCTGCAGGGAGAGCTGGAGGAGGAGTGGCAGGAGGTGATTGGGAGGTTTGAAGGTAAGGAATCCATCCCCATCTATAGCTGCCCTCCTTCCCTTGACCGCTCT----------------------------TCCTGTACCACCGCCCCTCTCCTGCCCCTCCT------GCCTATCACCTTCTCACAGCATTTTCCTGGCTACCCTCATCCTGCCCTCCCAAACAGATGACGCTTCCCATGAGACCCAGGAACCTGAGTCCTTCTCAGCCTGGTCAGATCGCCTGGCCCAGGAACACGCCCAGAAGCACCAGCAGCAGCA-CGAGA--CACAGGGAGCCTGCCGACCCCCACGGGCCGAGGGTTCCAATCACAGCTGGCAACAGCAGGAGGAGGAGCAGCGGCTCTTCCGAGAGCGAGCCCGGGCCAAGGAGGAAGAACTGCGTGAGAGCCGAGCCCAGAGGGCCCAGGAGGCTCGTGGGGACCGAGGGCCAGAGCCAGCCAGGGCTGGGCCCAGCGCAGAGCACCCACGAGGAGCAGGGAGAGGCAGCCTCTGGCGCTTTGGTGATGTGCCCTGGCCGTGCCCTGGGGGAGGGGACCCAGAGGCCATGGCAGCAGCCCTGGTGGCCAGGGGCCCCCCCTTGGAGGAGCAGGGGGCTCTGAGGAGGTACTTAAGGGTCCAGCAGGTCCGCTGGCACCCTGACCGCTTTCTGCAGCGATTCCGAAGCCAGATTGAGACCTGGGAGCTGGGCCGCGTGATGGGGGCCGTGACGGCCCTTTCTCAAGCCCTGAATCGCCATGCGGAGGCCCTCAAGTGA-TCTAGGGAAAGAGTGAGAACTGCAGGGAACACAGTGTTAGAGGCAGGGCCATAGGAAGGGGAAAGTCAAGTATGGGGATGACGAGGAAGAGGCCAATGCCACAGGATGAAGGATATGGGGTGGGAGCAAAATTTGTATTGAGTGGGAGTGGGGAGGATATGGGCCACCACCACTGCTGCTTGGCACCTCCATTTCCTAATAAGACCTGGTTCCACATCTCACTCCCTGTGTCTCCTCTGCCTTTTTCCATTGCTGTGGTTTTCATCATACATGACATCT-CTTTCCTACCCCGCCTGCCCAAACCCGCAGCTCCTACACACCTGCAACACACACGCACACACTAAGATGTGCTCTCAGCTGGAGCCAGGAAGGCCCTGCATGCCCACCCACAGAGGCAGCCCTTAGGAGACCCAGTATGCCCACCAGTCTCACTCCATTCCCTGCACTGGG--CTCCTCCACTGTGCAGTCAATGACTGGAAAAATAGATGTGAACTGAGGCAGAAAAGGGAACAAAGCCAGTTTCCCTCCTCTCCCCAGTTCCCCAGGCAGAACCACATCCTCCTCCCCATTTAACACCCCC-TCCCCCAACACAGGGCTTTCCCTTTGCTGAGTCACTGAATGCTCTGAATTGGGGGCAGCTGGAGCT-GGGGGCCCTGAGGAGGTTGTGGGAGGAT--GGAATAGAAGCAGAATGGACAGAGGAAGAGCCCTGGGGGGGGGGGGGGGAGTGGAATTTTGGTTGCTAAAATTAGGAGCAGGGGAAGGAGATGGAAAGAGCCAAATTATGTAACCTGGGTTGTCTGTTCTTGGGCAACTAGAGATCCACACCCAAAGCTA------------------------TCTCCCCTGGAGCTCCTCAGT----CCTCTGTATCCTCCAGGGCGCGGGTCCTC----------TCCAGCTTCTGCTCCCATCGCACCCCTGGAATTCATCTCTGGGCAGTTCA-GCTCAGCCTTCCAGATAGACCTCTTGTCCT----GAGGTTGAAGGAAAGGTCCTGAGGAGCAGAGGGAGAGGGTCTGGCGCCATCCCCTTCCCTGTTCACACTCCATTTCCACTCC-----------AGCTCCCCAGACCTGTAGACAGTACCAAACCCCACTGCCATCCCCCAGGACACAACAAGGAACTCCGTGAAAAGA--------------AAGGAAAGTACAGGCATGCGCCGGCCTGTGCA--ATCTGCACGACTCTACATCAGAGCATCTTATGAATCAGGAACTTACTTTCCAGGCTTGGAGCCCTGGTTTACTCAGGAGGATCCCAGGAGTGGAAGCAGAGGGCAATAGAGGATAGGGAGGGGAAGCCCGTGGAAGCAGGGGTATGCAGAGTGGGCAAGGGA-CCTGGGAGAAGACAGCCAGGAG---------ACCCAAAGCCTCCCA--GACCAGGCAGCTGTTCAGGGT-CAGGAGGAGGAAGGGCTGGTGAGAAAGATCCTGTGAGAGGAAGCTGCTGTGATTCAGAGAAGAGTCTTTGAGCTGTGAGCAACCCAGGCGTCCGGTTCCTCTCACAGGCCGGAGA-TTTCGGAAGTGGCATGCAAAGAGCCCACATTGGG-AGTGGGGGGAGTTGGGGTTGCTGGAGTTAGGATCCCTAAGCTGGGGGGTCGAGAGGTAAGCATTAGAAACCTTTGGCAGCCAAATTTGCTCCTCCATCCAG--ATTTTTTTTCTGGCTTTTAAGCACATC-TTTGCCCTTCTACAAAAGTTACATAAAACCAAAGCAAAATAAGCCCTGATACCTGA--CCCCCAAATCTACCTCTTTTCAACGTCCCTTCCTGGTGTCTGGCCCCCAGCCCTGTTGGGGGTTCCCCTGAGATGAGGGCTGTTCACTTTCTCTGACCACAGGGTTTCCGCTTCTGTGTCTCTTGTTTCCTAGTCTGATAAAAATACTGAGCCCTAGAGGCCCTAGCTTCCTCTGACCCCCTGGGGCCAGGCAGCAGGCATCCTGTCCACCGTGGTGGGGGCAGGGAGGGGGGCCCAGGGATCCCCAAGGGATGACTCAGTGCCTACCGTGAAACACTGGAGAGGTGTGAGTG--TTTCTGCTCTCGACAGCTGGAACGAGGAAT----CTTAAGTGAAGGACGATGCATTGGGGTTCAGTTAGAAAAACAAGATTAGAGAACAAGACTAGAGAGATCAAAGAGGGTCAATTAG-GGACTGGGGTTTAGGCAAGTTTGAGTTAAATTGAGAAAAGGATCTGGAAAGGAATCTATTCAGTGTAGTTCAACCAAGCATCAAGTAGCCCATTGGT-AATCCAAA--CTGCTTCAAGTTTTCAGTCCAACAGCGGAGGTGAGGCCCATACCTAATTG--TGATTCAGGGCATGTTGCGGAGTGAATGCCCTAGAGTAAATCCTA--GTGGATCCAGAAA-AGGGGAGGTGAATTCCATCTGAAAGCA------------CTGGGGCGGTGGGGCT--------------------------CTGGGTGTAAGTGAATGGAAAAGCTCCGTAGATCAATGAAATGGCTTCAGCAGAGACCAGGAGTCAGAAAA--CAGCATACTGAGGAAAAGATGAACATCCTGTGGTAGACCAAACACAGGTGTGAGTGAGCACGTGTTGAAGAAGGGACCATAGAATGCCAAGGTAAAGGGTTTAGGACACACTTCATGCTGTGTGCTGTGGTGCTGGTGACAGCTGTGCAGAAGAGGGAGAGAGAACGGGAGAGTGCTATATGTGTTACAGACAAGGAGTCAAGAAaaaactatcattctgtg----aacacctaccatgt------caagccccttcctaacatgagtaatcctgccaacaactgttcagaaggtgggtggt a score=42650 s hg19.chr6_ssto_hap7 2860284 842 + 4928567 ttattaagcacctattaggagcagggcact--gcttgacaataggtataaataa----taaagtcactgccttcat---agaacttgcagtctaatgagacagtatacaaataataactatacattatagttataatgtataggtatgcctgcttagggtaataaagtgctcaatgaagg---------tttgaggtaccagcatgactctcaggtggagatttccagaaagcaggtctggagctcaagagaa--gttgggtctggaggaacagatttgggcatcattcccttcccagtagaggttgagcctttg-agtggacaggatcttcaagggagggggcggagtgaccagaagagccctgagcatgatcaaaggaagagaaccaataaaggag--aggttgggga-gcagtcagagaagcagggcacggggggcgggggatgccaagcagagacagggcagccatgtttgaggcttcaaagaggtctagtaaatgagggttgaaaagattgttgggttcaggaactagacgattacaaattttgagaaaaccgtttccatttaatagaggggcagaaatcactttacataggttgaggaatgagtgggaggtgaggaaaaggaggtggtgggcatGAGGTCA--GAATGGTGAACACAGAA--TAACTGAGAATCATCTCTTAGTTCTACCCACAGATTTTACAGTTGAGGGAAATTTTACCAGTTCCTGAAAAAGTGGTTCGTTAAGGGGGC-TAGTCTTTTGAGACATCACACGAAAACGGAAGGTGAGA--TAGACTGGACATTTGAGGGAGAAATAT--TCCAAGGAAGGATCTTTTTTGTTGTTTATTTTCAAGAAATAAAATTG s canFam2.chr12 4063694 833 + 75515492 ttattaagcacctgagaggagcagggcactctactagacaaaaggtttaaatgaaatataaagtcactgccctcattagagggcttgcagtataacaagttaatataaaagtaacaactaca------agtaataatggg-aggtgcacctgcttagagaaataaagtgttcaaagaaggcttgctgagtttgaggtgttagcataatatgcaagtggagatttccaacaagcaggtccagaactcaagagaaaagtttgaactggaggggtagatttgggcatcattcccttcctagcagagac--agtctctggagtggacaggagccctgagagaggg-------tgaccagaatagcccctaaag------acggtgaggaatcactaagggagggaggtgggggaagcggttagagaagtagggcaagggagg---ggtgtgccaagcagagaccgggcaactacatctaatgcttcaaagaggtctagtaggggaaggttgaaagatcctttgggttcaggaactagacaattacaaattttgagaaaacagtttccacttaccagatgggcagaaatcgctttacagaggttgaggaatgagtgggaggtgaggaaagggaggtggtaggtacaaagtcatagaatggtgaatatataagacaactaagaatcatctct-agttcaacccacgaattctacagatgaggaaaATTTTACCAGTTCCCAAAAAAGTGGGTAGTTAAGGGGGCCTACTCTCTTAAGACATCACACAGAAAAGGAAGGTGAGAGATAGAATGGATATTTGCGAGAAAAACAGAGTCCAGGGAA----------------CTATTTTCAAGAAATAAAACTG a score=754 s hg19.chr6_ssto_hap7 2861126 20 + 4928567 AAGGTAAAATGAAGATGCTT s canFam2.chr12 4064709 20 + 75515492 AAATAAAACTGAACATGTTT a score=5471 s hg19.chr6_ssto_hap7 2861767 121 + 4928567 AACATAAGCAAGAAGTGGGGAGAGAATATAGTAAAGATAGAGGAAGTGGG--ATAGAGTACAGATAAAAGGATCAGTCTTGGAAACAAGAAAAAGTACTGTGAGTCAGTATGTAAGGAAAGAT s canFam2.chr12 4064758 116 + 75515492 AACATACTGAAAATGTGGGGAAAGAATATAGTAAAGACACAGGAAGTGGATTACAGAGTACA-----AAGGATCAGCCTTGGACAGAAGAAAGAGTCTTG-GAGTCAAAA-GAAAAGAAAGAT a score=9384 s hg19.chr6_ssto_hap7 2861888 310 + 4928567 TAAATATA--------ACAAAATTAAGGAAAAAGAGGGAAGTGA---GATCCACACTTGATGGCCTTAAGCTCAATGAAA----------TATTAATAGATGAGAGTGAAGAA------------CATCAGAGGCACGGAGATTTAGAACATCACGCACAGTAGTATAATGGGGAGTCAACAAAGAATGAGTAAAAGTTGTGTCCAAGAACACTGATGACTCTCTGAGATTAGCTGGCCAGGATTAGTTATAGGCCTCTTATGGTGACTCAGCTGTCTACTGCAGCGCTTGGCAGCCTAAGACAAAGCCCCAAGAATGAGACCACTTAGTTTACCCAAGTCAA s canFam2.chr12 4065075 320 + 75515492 TAAAAATAGATGAAATATAAAGTAGAGGAAAAGGGAAGAAGTGAAGAGGTCAGC-TTGGATGGCCGTAAGCTCAATGAAAGAGATGACAGCATCACCAACCGAGAGGAAAGAGGTAAAGTTGAGGTGTAAGAGGCTCAGAGA------ACATTGCGTGCAGAAATGTAAAAGGGAATCAAGAAAGAAGGATTGAA-------CTGAGAAATACTGAGAGCTCTCTGA-------TGGCAAGGGTTAGCAGAAGGCCTCTTTTGGTGACATGACT--CTCCTGCACTATGTGGCAACCTTGGAGAAAGCCTCAAGAATAAGACCACTGAGTTCATCCAAATCAA a score=15663 s hg19.chr6_ssto_hap7 2862514 332 + 4928567 GGAGTTGAAATTGTTGACCATGCAGTACATGTTAAATCA-----ACAAGCAAAACCAGGAAAGCAGAAGCAGCCGGAAGTCTTGGTAAGAATAAAGAACTGATTCAAGGGGAGGCAGAGAGTGGGAGATGTGAAAAGTGAGTGGTTGTGATGAGAAGGGTAATTCAGAGATCAAGATCTTGAAGGCATAATTCTTCCAAGTGATGCTGGGGTTTGAGGTACAACCTTACTCCTGGGTGGCTAAAATGGAGGAGGGAAGAAGAGGCTGTAAAACCAGTAGACTTGAGAAACTTGGAGA-ATTGAGAGGCCAGACTGTAAGACTCATCTGATCTGTGTGG s canFam2.chr12 4065640 324 + 75515492 GTAGTTGAAATTGTTGACCATGCAGTGCAAATTATACCATATGGGCAAGGAAAACAAGGAAAGAAGAGG-AGTTGGAAGCCTTGGTGAGAATGGGGAACTAATTTGTTGGGGA----AGAGTAGGGGGTATGAAA-GTGAGTGGTCATGATGAGAGGGAAAATTCAGAGTTCAAGATCTCAAAGATGTAGCCCTTCCAGGTGATGCTGAGGTCTGAAATACAACCTTGCTCGTGGGTGCCTAAACAGGAGCAGGGAA--AGAGGCTATAAAGTTGTTGTAATTGAGAAATTTTAAGGCACTGAGAGGACAG--TGTGAGACTCAT----TCTGCGTGG a score=1874 s hg19.chr6_ssto_hap7 2863173 28 + 4928567 TTTTAAAGTCACTAAAGATGGTGGTAGG s canFam2.chr12 4065964 28 + 75515492 TTTTGATGTCTCTAAAGATGTTGGTAGG a score=23353 s hg19.chr6_ssto_hap7 2863522 526 + 4928567 GATAAGATGTGGAGAAAGACTGAGCTAGTTATACAAGTTGTTAAGAGCATAATAAATATTTTGATGGATAAGATTGTGCTGTGAAGACAGGAAGAGCATGGCAAATGCAAAAGGCACGTGCTTTGGGAGATGAGGAGGAGTTTATCAGTGGT-CTGGGGGAGAGAAAATAACGACCCCTCTCTTCTGCCTTCATTCCCCTAGTGATGGAGGTC--------------GAAGAAAGAGCAACCTTCACCACAGAGAGGAGTAGCATCATTAGGGGAAAGCCAGGTTTCAAAATGCCCAGAGGAAAATGCTTTCAAACATAGAAGACAGGATTTGAAAATGTGAAGAGTTCCACCAAATATTGTGAAATGGATTGGTAGAAGGGTCCTTGTGGGGTAGGGAATTGAATCCAGGGAGGTTAAATCCCAGTGGGAATTCAG---AAGACTAAGTCTGGAG-AGTTTAGCTTCTAGGAGCAGGAGGTTGTTGCCTCTGGAATTCAGAATGGAAGATGCACTGCATCCATTGTGAGGGGAAA-----CAAGTGCCT s canFam2.chr12 4065992 520 + 75515492 GATGAAATATGAAGAAGAGCTGAGTTAGGTATA-AAATTGTTAAGGGTGTGATAAA------GATGGTGAAGACTGTGCTGTACAGATAGTAAGAGAATGGCAAATGCAAAAGGCATGGGCTTCAAGAGGAGAAAAGGAGGTTGCTAATGGTGCTG----------AATAGTGATC--TCTCCTCTGCC------CCGGTAGGGACAGAGGACCTTGTGATTGGGAGGAAGGAAGAGCAGTGTTCACCAAAGAGAAAAGGAGCATCATTAGGGTAAATCCAGGTTTCGTGGTGCC-AGAGGAAGACTCTTTCAAAAATGAGACAGAGAATTTGAATATATGAGGAGTTCCATCAAATATTGTGAAAT----TGGCTGAAGTGTCCCTGTCAGGTAAGAAGTCTAATCCAGAGAGGTTAGATCCCAGTGAGACTTCAGGAGAAGACAAGGTCTGGAGGAGTTTTGCTTCTGGAGATAGGAGATTGCTGCTTCTGGAATTTAGAATGGAAGGGACATAGCATTTATTACGAGGGAAGAAACATTAAGTACCt a score=7311 s hg19.chr6_ssto_hap7 2864052 147 + 4928567 GGGGTCTTATAGGGATGCACAAGATAa-------------gttccatggctttaaacaccatcctcatgctgaccatgcccaggtttctttctctagcttggaccttgcccctgaaatccagatgtgtatc----tgcccagtggcatctctacttgcatgtct s canFam2.chr12 4066715 164 + 75515492 GAGGTCTCAGGGGGATGCACAAGACAAAATatgtcttccagttgcatggctttaaatgccatcctcatgctgatgacttctaatgttgtctctctagctctgaccttgcctctgaaagccagactcctatccaactggcaagtgaaatctctacttggatgtct a score=9182 s hg19.chr6_ssto_hap7 2864199 257 + 4928567 aatagacttagacttaccacacccaaaatagaattttttagtttttcca-tccatcagaatcctgcttctctcccagtatctacatctcccaccc--------atc------aatccatcatctagtcctgttgtttctacccctggaatgtataatatatcccaaacttgtctacttctctccatctccatggctgccactattttctcttcacc-atcaatgccactgccacctg--------------------------tctcctaccagccagcctaaacacaggagccacagt s canFam2.chr12 4067099 286 + 75515492 aatggatttagacttaacatattcaaaatcaaactttt-ggttcacccacttcatcagaatccg-----tgtcccagtctccctatcttccatccccacacacatccactcaaattgaacatcaagtcctgtcaattctacccctgaaat-------atatcccacatttgtctacttctctccatttccacgtctgccaccatcttctctcttcctatcactgccattgcctcctaacttgtgtccctgctttcatttttttccttctacaatccaatctagacacaggatctttttt a score=1096 s hg19.chr6_ssto_hap7 2864456 14 + 4928567 gatcttttaaaaac s canFam2.chr12 4067584 14 + 75515492 gatcttttaaaacc a score=3220 s hg19.chr6_ssto_hap7 2866155 140 + 4928567 TCCAATCACCTCTGC-TCACctccctctttctctctctctctctc---tctccctccccctctctcCCCTGCAacacacacacacacacacacacacacacacacgcacgcatgcacgcaccacacacTCTGACGAcctttaaa s canFam2.chr12 4067798 129 + 75515492 tccaatcacctctgcctcactccattccatcctccacctcctccccagtcctctttcccctcttcccccttatacacaaggatacatacacactgacaccc---------------tgcttctcatgatttatttacctttgaa a score=62937 s hg19.chr6_ssto_hap7 2866337 1218 + 4928567 tgcatggccctgcatgacctggcccctgccctc-ctctctgacctcatctcccacccgcctcccagtctctctctctgctccagccacac--tggccttctgtttgt-cgtcaacacccccagcttggttccgccttccagcctttgcagtagctgctccctttacctgaaatgctttgctcccaaacttttacctggtcactattttttgtcatttgggtctcagctccagtgccacccaaacactcaaagaggattttgctgactactgtatttaaaagtagctccctgccactcttacaacatcagcctgtcttattttctcatagtaccaattt----cttcttcagtttctttcttttccgtctggcctcactggaatacaagctccacaggtgctggtaccttctctgatccctttgcctccatgtccctcctgccttaggacaatgcccagcatgtgttaggcacgcagata-----ctca---------------------------------------ctaaatggaggaatGGATGAATAATT-CATAAAGCAGGATAAAGTTCAACTTTAGGCTTGTGGCTCAGATTGGACTTAC---------------------------------------------------ATTT------AGAGTCAGATTTAAGTTTAGTGTTAGGAGTGGTGGTAAACTGGTTTCAAGATTAGCCCTAG-AAACAGGGTTGGGTTGGGGTAGAGGAGAAGTTTTATTTAGGGGGTTATTAATTGGGATGTGTttagatttaaggttagggttacagttggggttgagtttgagttgtgatttgggttgaggttaaatttgggttagggttgatgttggtattaAATCCCAATTCAGGTTTTGAGGCTAAGTTCAAGTTTGAAGCTAATGTC---ATTTCAGTCTCATTTGGAGGCTTCAGAGATTTCACTAGTTTCTCCACAAAGACCACTATAAAGACTGTATTTCCCTGAGTCTGGGGCACAAGACTCCAGTCATCAGCTCTCCCACCCAGGGAAAGTCCCAAACCAACTGCTGGCCTGCCCAAGAAAGAAACCAAA-TTCATACAACCTCCGAAACTGAGATTGAAACCAAGATTGGCCCATCTCAAGGAGCATCCTTC-GCATATCTCACATGCACGTGACACTGAGCCTCAGCCCAGTCTTACCCTTCCTTCCTCTGTGTCTCTCATGTCTCCCCATCACCCTTCTTGCCTTCCCTTTTTTGTCTTTCAATGTCCCATTCTTCCTCTTTAATTTAAATTTCTCTCT------GTGTCTCACTGTTAATTGCAATAC s canFam2.chr12 4068136 1278 + 75515492 tgaatgtccctgcatgatctggctcctgccttctctctctgactccatcccctaccccgctccca--ctgtctctctgctccagccacacaccagcttcctttctgttcttcaacaccccctgctcatttctaccttccagcttttgcagtagctgttccctttgcctggaatgcttctcccctaaatcttcacctggtcactcttacctgtcatttgggtcttagcttaaatgccactta----ctcggaaaggacttc-ctgaccactgtgtctaaa-gtagttctctgccactcctcacatgtc---ctctattatttcctcatagcactacttattgacttcatcagggtatttcctttatgctttgctttactaggatg--------------------------tctgatttgcttgccactatatccctattgcct-agaacagtgcccagcacataataggtactcaaaaaaccttcttaaatTGGGGCCAAAAAAAAAATGGGGCCAAAAAGAAATTCTTAAATGGAGGGATGGATGAATAATGGAATAAAACAAGAGAAAGCCCAACTTTAGGTTTGAGGCTTAGATTGGACTTACCTGTAGAATCAGGtttatttatttatttatttgtttattttattttattttattttttttaaGAATCAGGTTTAACTATAGGGTCAGGTGTGGGGATGAGTTAATTTCAAGATTAGCTCTAGGAAACAAGGTTGGGTTAGTTTAGAGGATAAGTTT-ATTTTCAGGTTTATTTATTGGAATGTATttagatttgaggttagggtt------------gagtttgagttgcgatttgggttgaggttaaatttgagttagggtcaa----agtATTAAATCCCAATTTAGGTTTTGAGGCTAAGTTCAAGTTTGAAGCTAATGTTCAAGTTTCAACCTCATTTAAAGGCCTCAGAGATTTCACTAGTT-CTCCATAGAGCCAACTGTAAAGACTGTATGTCCCTGAGTTTGGGGCACAAGACTCCAGTCATCACCCCTCCCACCCAGGGAAAGCCCCAAACCAACTGCTGGCCTCCCCAAGAAAGAAACCAAATTTCACACAACCTCCGAAACTGAGATTGAAACCAAGATTGGTCCATCTCGAGGAGCGTCCTTCAGCACATCACAAACGCCTGTGACACTGAGCCTCAGCCCAGTCTTGCCCTTCCTTCCTCTCTGTCTCTCATGT---CCTATCACTC--CTTGCCTTCCCCTTTTTGTTCCTCAATGCCCTG-TCTTCCTCTCTGACCTAAGTTTCTCCCTTTCTCGGTTTCTCACCATTAATTGCAACAC a score=9697 s hg19.chr6_ssto_hap7 2867896 172 + 4928567 CATTTTATATTTTAATATAGCTCAGCTGGGGTCCC--AGTCCATCAGCTCATACCATTAGAGAAGCAGAAAGAGACAACAGGAAGCAAAAAGGACCCT---GAGAGAAAGGGCAACACAGAGAAAAAGAAAGGAGCAGGGGCTAAAAGGGAAACCCACACTGACACAAGAGATAATA s canFam2.chr12 4069414 172 + 75515492 TGTTTTATATTTTAATAT-----AACTGAGGTCACTTAGTCCATCAGCTCCTACCATTAGAGACGCAGAAAGAGACAACAGGAAGGAAAAGGAACCCCAGAGAGAGACACACACACACAGAGGAAAGGAAAGGAGCAGAGACCAAGAGGGAAACTAACAGTGACATAAGAGACAGTA a score=1504 s hg19.chr6_ssto_hap7 2868068 22 + 4928567 AGGTTAAAAGAA-TGAGAAGAAg s canFam2.chr12 4069775 23 + 75515492 AGGTTAAAAGAATTAAGAAGAAG a score=1884 s hg19.chr6_ssto_hap7 2868811 43 + 4928567 GACTAGTAAAGCATAAAAGGCAAAGGGGCAGGTCCTCAAGTAG s canFam2.chr12 4071245 37 + 75515492 GACCAGGAAGGCATGAAAGACAAAGAG------CCTCAAGAAG a score=5101 s hg19.chr6_ssto_hap7 2868854 166 + 4928567 AGAAGAACAGGAGAAATAGCTCATACACACCCAGAATGTTACTTACATGTCCCTCCATGTTACACCAAGACCCCTCAGGGACCTTGTGCCTGGGGAGAGAAGTGGTCTGCCCCATGCAACAGTGGGCTTTACCCCGGGTCACCACCAGCCCCAGC---TCCAACCCCTC s canFam2.chr12 4071490 166 + 75515492 AGGAAAGCAGGAGAAATGACTGATACAAACCCTGAATGCTACTTATGTGTGCCACAGGG---CACCAAGACCACTCAGAACCTTTGTGCCAGAGGAGAACAGCAATATGCCCAATGCCATAgtgggggtgggggtgggggtgggggGGCTTTAGCCATTTAAAACCCTC a score=3506 s hg19.chr6_ssto_hap7 2869020 103 + 4928567 TAACACTCTCCAAGTAAAATCACATCAGTAGCAGTAA------TAATATTTGAGGTGACAAGTTGGTATTATCTCAAACTTAGGAAAAGTGAATAAAGTCATCTTTAGA s canFam2.chr12 4071823 109 + 75515492 TAAAACCCTCAAGATGAAAGCATAACAACACCAATAAAAATGGTGATACTTGAGAAAGCCAGTTGTGATTTTCTCAGTCTTCTAAAACATGGATAAAATCATACTTAGA a score=22570 s hg19.chr6_ssto_hap7 2869123 511 + 4928567 AACTGCTTTT--------TTTA--AACCTTG-------TAACTTGCAAGCTAAGTGAAAATGGGCTcatgtatgagaatgttcgtgttagacattttttgtgttagacaaaaactagaaacaaaccaaatccccatcaacagaa-----------tatattagaatatattgatacaatagaatattacatcataattttttttaaaaacat--------tactgatacatacaa-ccacgtatatgaatctcacaaacataatgctgactgaaagaagtcaaacagaaatgagtacattctgtgtgatttcatttatatgatgccccaaaccaggaggaaataatctatggtgataaaagtgagagagtggttggttatctttggagggtatcagcagggagggggcatgagggaacctgctggggacctgaaaatacgtggagctgggtggtggctacat--acagatggaaaaattcatcag-ctgtacacttaagaggtgtccacctca---tacctaagttacatatcaataaaaaGGAAAAAAATTTT s canFam2.chr12 4072137 539 + 75515492 aaatgtttttaaattatatttagaaaccttgcttttttttacatacaaattaagtgaaaactggctcatgtatcagaatgttcatatc-gacatctttcagagtaaccaaaaactagaaacaaaccaaatgtctctcaacagaaaaatgggcaaataagttagagtatattcacacaatagattgctgcatcataatgaaaagcaacaacaaaaacaacatactga-acatgcaaatcacatggatggatctcacaaacatcatgttgagtgaaagaagccaaacc-caacaagtacattctgtatgacttcatttatatgacattcaaaagcagagacaactaatctatggtgatagaggtcagaaagtggttggttatctttagaggttatcaactgggagggagcatgagagaaccttttatagacccaaaaatatgttgaactgggtggtgactacatgaacagatggaaaagctcatcaggctgtaaatttaacagatacgtaccttactgtacccaagtta------------AAAGGGGGAAATCTt a score=6806 s hg19.chr6_ssto_hap7 2869938 203 + 4928567 GGAACAATTTTaaaataatgtattggctctgcaaatgcagcttcagaacaagtcccttagctgtccccaccccaccctaagtcaccacccttaagcctcacccatgtggaattctgaaacttcctt---tgTAGAAAACTTTGGAAGGTGTCTGCCACATTGATCCTGGAATGTGTGTTTATTTGGGGTTATATAAATCTGTTCTG s canFam2.chr12 4072866 184 + 75515492 GGGGGAAATCTTAAACATTATACTGGTGCTGCAAATGCAGCTTCCAGACGAGTCTTTCAG--------AGTTGACCCTAGCTCAGTACCCTCAAGCTCCTCCTGC--------------CTTCCCTCCCTGTAGAGAACTTTGGAAGTTGCTACATTCCTTAATCCCAGAGTGTGTGTTTGTTTGCGGTTATATAAATCCGATCTG a score=354547 s hg19.chr6_ssto_hap7 2870141 6865 + 4928567 TGGAAGCCACCTGAAGTCAGGAAGAGATGGAGGGCATCCTTCAGGAGTGAGATGAGACCTCATCATACTTGACTGTCCA--GCATCATCTCTGAGTGaggggaccaaaaaatttatcttccaaactaggacactttcaagagtggaagggggatccattaatattttcacctggacaagaggcaaacaccagaatgtccccgatgaaggggatatataatGGACCTTCTTGATGTGAAACCTGCCAGATGGGCTGGAAAGTCCGTATACTGGGACAAGTATGATTTGAGTTGTTTGGGACAAGGACAGGGGTACAAGAGAAGGAAATGGGCAAAGAGAGAAGCCTGTACTCAGCCAAGGGTGCAGAGATGTTATATATGATTGCTCTTCAGGGAACCGGGCCTCCAGCTCACACCCCAGCTGCTCAACCACCTCCTCTCTGAATTGACTGTCCCTTCTTTGGAACTC-TAGGCCTGACCCCACTC----CCTGGCCCTCCCAGCCCACGATTCCCCTGACCCGACTCCCTTTCCCAGAACTCAGTCGCCTGAACCCCCAGCCTGTGGTTCTCTCCTAGGCCTCAGCCTTTCCTGCCTTTGACTGAAACAGCAGTATCTTCTAAGCCCTGGGGGCTTCCCCGGGCCCCAGCCCCGACCTAGAACCCGCCCGCTGCCTGCCACGCTGCCACTGCCGCTTCCTCTATAAAGGG-ACCTGAGCGTCCGGGCCCAGGGGCTCCGCACAGCAGGTGAGGCTCTCCTGCCC--CATCTCCTTGGGCTGCCCGTGCTTCGTGCTTTGGACTACCGCCCAGCAGTGTCCTGCCCTCTGCCTGGGCCTCGGTCCCTCCTGCACCTGCTGCCTGGATCCCCGGCCTGCCTGGGCCTGGGCCTTGGTGGGTTTGgttttggtttccttctctgtctctgactctccatctgtcagtct-----cattgtctctgtcacacattctctgtttctgccatgattcctctctgttcccttcctgtctctctctgtctccctctgctcaccttg--------gggtttctctgactgcatcttgtccccttctctgtcgatc---tctctctCGGGGGTCGGGGGGTGCTCTCTCCCAGGGCGGGAGGTCTGTCTTCCGCCGCGT-GCCCCGCCCCGCTCACTGtctct-----------ctctctctctctctttctctGCAGGTTCTCCCCATGACACCACCTGAACGTCTCTTCCTCCCAAGGGTGTGTGGCACCACCCTACACCTCCTCCTTCTGGGGCTGCTGCTGGTTCTGCTGCCTGGGGCCCAGGTGAGGCAGCAGGAGAATGGGGGCTGCTGGGGTGGCTCAGCCAAACCTTGAGCCCTAGAGCCCCCCTCAACTCTGTTCTCCCCTAGGGGCTCCCTGGTGTTGGCCTCACACCTTCAGCTGCCCAGACTGCCCGTCAGCACCCCAAGATGCATCTTGCCCACAGCACCCTCAAACCTGCTGCTCACCTCATTGGTAAACATCCACCTGACCTCCCAGACATGTCCCCACCAGCTCTCCTCCTACCCCTGCCTCAGGAACCCAAGCATCCA---CCCCTCTCCCCCAACTTCCCCCACGCTAAAAAAAACAGAGGGAGCCCACTCCTATGCCTCCCCCTGCCATCCCCCAGGAACTCAGTTGTTCAGTGCCCACTTCCTCAGGGATTGAGACCTCTGAT---CCAGACCCCTGATCTCCCACCCCCATCCCCTATGGCTCTTCCTAGGAGACCCCAGCAAGCAGAACTCACTGCTCTGGAGAGCAAACACGGACCGTGCCTTCCTCCAGGATGGTTTCTCCTTGAGCAACAATTCTCTCCTGGTCCCCACCAGTGGCATCTACTTCGTCTACTCCCAGGTGGTCTTCTCTGGGAAAGCCTACTCTCCCAAGGCCACCTCCTCCCCACTCTACCTGGCCCATGAGGTCCAGCTCTTCTCCTCCCAGTACCCCTTCCATGTGCCTCTCCTCAGCTCCCAGAAGATGGTGTATCCAGGGCTGCAGGAACCCTGGCTGCACTCGATGTACCACGGGGCTGCGTTCCAGCTCACCCAGGGAGACCAGCTATCCACCCACACAGATGGCATCCCCCACCTAGTCCTCAGCCCTAGTACTGTCTTCTTTGGAGCCTTCGCTCTGTAGAACTTGGAAAAATCCAGAAAGAAAAAATAATTGATTTCAAGACCTTCTCCCCATTCTGCCTCCATTCTGACCATTTCAGGGGTCGTCACCACCTCTCCTTTGGCCATTCCAACAGC-TCAAGTCTTCCCTGATCAAGTCACC-GGAGCTTTCAAAGAAGGAATTCTA-GGCATCCCAGGGGACCACACCTCCCTGAACCATCCCTGATGTCTGTCTGGCTGAGGATTTCAAGC-CTGCCTAGGAATTCCCAGCCCAAAGCTGTTGGTCTGTCCCACCAG-CTAGGTGGGGCCTAGATCCACACACAGAGGAAGAGCAGGCACATGGAGGAGCTTGGG-GGATGACTAGAGGCAGGGA---GGGGACTATTTATGAAGGCaaaaaaattaaattatttatttatGGAGGATGGAGAGAGGGGAATAATAGAAGAACATCCAAGGAGAAACAGAGACAG------------GCCCAAGAGATGAAGAGTGAGAGGGCATGCGCACAAGGCTGACCAAGAGAGAAAGAA-----GTAGGCATGAGGGATCACAGGGCCCCAGAAGGCAGGGAAAGGCTCTGAAAGCCAGCTGCCG----ACCAGA-GCCCCACACGGAGGCATCTGCACCCTCGATGAAGCCCAATAAACCTCTTTTCTCTGAAATGCTGTCTGCTTGTGTGTGTGTGTCTGGGAGTG-AGAACTTCCCAGTCTATCTAAGGAATGGAGGGAGGGACAGAGGGCTCAAAGGGAGCAAGAGCTGTGGGGAGAACAAAAGGATAA--GGGCTCAGAGAGCTTCAGGGAT--------ATGTGATGGACTCACCAGG-TGAGGCCGCCAGACTGCTGCAGGGGAAGCAAAGGAGAAGCTGAGAAGATGAAGGAAAAGT-------CAGGGTCTGGAGGGGCGGGGGTCAGGGAGCTCCTGGGAGATATGGCCACATGTAGCGGCTCTGAGGAA--TGGGTTACAGGAGACCTCTGGGGAGATGTGACCACAGCAATGGGTAGGAGAATGTCCAGGGCTATGGAAGTCGAGTATGGGGACCCCCCCTTAACGAAGACAGGGCCATGTAGAGGGCCCCAGGGAGTGAAAGAGCCTCCAGGACCTCCAGGTATGGAATACAGGGGACGTTTAAGAAGATATGG-------------------------------------------------------------------------------CCACACACTGGGGCCCTGAGAAGTGAGAGCTTCATGAAAAAAATCAGGGACCCCAGAGTTCCTTGGAAGCCAAGACTGAAACCAGCATTATGAGTCTCCGGGTCAGAATGAAAGAAGAAGGCCTGCCCCAGTGGGGTCTGTGAATTCCCGGGGGTGATTTCACTCCCC--GGGGCTGTCCCAGGCTTGTCCCTGCTA-------CCCCCACCCAGCCTTTC-----------------CTGAGGCCTCAAGC---CTGCCACCAAGCCCCCAGCTCCTTCTCCCCGCAGGGACCCAAACACAGGCCTCAGGACTCAACACAGCTTTTCCCTCCAACCCCGTTTTCTCTCCCTCAAGGACTCAGCTTTCTGAAGCCCCTCCCAGT-------TCTAGTTCTATCTTTTTCCTGCATCCTGTCTGGAAGTTAGAAGGAAACAGACCACAGACCTGGTCCCCA--AAAGAAATGGAGGCAATAGGTTTTGAGGGGCATGGGGA---CGGGGTTCAGCCTCCAGGGTCCTACACA-----CAAATCAGTCAGTGGCCCAGAAGACCCCCCTCGGAATCGGAGCAGGGAGGATGGGGAGTGTGAGGGGTATCCTTGATGCTTGTGTGTCCCCAACTTTCCAAATCCCCGCCCCCGCGATGGAGAAGAAACCGAGACAGAAGGTGCAGGGCCCACTACCGCTTCCTCCAGATGAGCTCATGGGTTTCTCCACCAAGGAAGTTTTCCGCTGGTTGAATGAT--TCTTTCCCCGCCCTCCTCTCGCCCCAGGGACATATAAAGGCAGTTGTTGGCACACCCAGCCAGCAGACGCTCCCTCAGCAAGGACAGCAGAGGACCAGCTAAGAGGGAGAGAAGCAACTACAGACCCCCCCTGAAAACAACCCTCAGACGCCACATCCCCTGACAAGCTGCCAGGCAGGTTCTCTTCCTCTCACATAC--TGACCCACGGCTCCACCCTCTCTCCCCTGGA----------------AAGGACACCATGAGCACTGAAAGCATGATCCGGGACGTGGAGCTGGCCGAGGAGGCGCTCCCCAAGAAGACAGGGGGGCCCCAGGGCTCCAGGCGGTGCTTGTTCCTCAGCCTCTTCTCCTTCCTGATCGTGGCAGGCGCCACCACGCTCTTCTGCCTGCTGCACTTTGGAGTGATCGGCCCCCAGAGGGAAGAGGTGAGTGCCTGGC--CAGCCTTCATCCACTCTCCCACCCAAGGGGAAATGGAGACGCAagagagggagagagatgggatgggtgaaagatgtgcgctgatagggagggatggagagaaaaaaacgtggagaaagacggggatgcagaaagagatgtggcaagagatggggaagagagagagagaaagatggagagacaggatgtctggcacatggaaggtgctcactaagtgtgtatGgagtgaatgaatgaatgaatga-------atgaaCAAGCAGA------TATATAAATA-AGATATGGAGACAGATGTGGGGTGTGAGAAGAGAGATGGGGGAAGAAACAAGTGATATGAATAAAGATGGTGAGACAGAAAGA-GCGGGAAATATGACAGC----TAAGGAGAGAGATGGGG---GAGATAAGGAGAGAAGAAGATAGGGTGTCTGGCACACAGAAGACACTCAGGGAAAGAGCTGTTGAATGCCTGGAAGGTGAATACACA---GATGAATGGAGAGAGAAAACCAGACACCTCAGGGCTAAGAGCGCAGGCCAGACAGGCAGCCAGCTGTTCCTCCTTTAAGGGTGACTCCCTC-GATGTTAACCATTCTCCTTCTCCCCAACAGTTCCCCAGGGACCTCTCTCTAATCAGCCCTCTGGCCCAGGCAGTCAGTAAGTGTCTCCAAA-CCTCTTTCCTAATTCTGGGTTTGGGTTTGGGGGTAGGGTTAGTACCGGTATGGAAGCAGTGGGGGAAATTTAAAGTTTTGGTCTTGGGGGAGGATGGATGGAGGTGAAAGTAGGGGGGTATTTTCTAGGAAGTTTAAGGGTCTCAGCTTTTTCTTTTCTCTCTCCTCTTCAGGATCATCTTCTCGAACCCCGAGTGACAAGCCTGTAGCCCATGTTGTAGGTAAGAGCTCTGAGGATGTGTCTTGG---------------------AACT-TGGAGGGCTAGGATTTGGGGATTGAAGCCCGGCTGATGGTAGGCAGAACTTGGAGACAATGTGAGAAGGACTCGCTGAGCTCAAGGGAAGGGTGGAGGAACAGCACAGGCCTTAGTGGGATACTCAGAACGTCATGGCCAGGTGGGATGTGGGATGACAGACAGAGAGGACAGGAACCGGATGTGGGGTGGG---CAGAGCTCGAGGGCCAGGATGTGGAGAGTG-AACCGACATGG-CCACACTGACTCTCC----TCTCCCTCTCTCCCTCCCTCCAGCAAACCCTCAAGCTGAGGGGCAGCTCCAGTGGCTGAACCGCCGGGCCAATGCCCTCCTGGCCAATGGCGTGGAGCTGAGAGATAACCAGCTGGTGGTGCCATCAGAGGGCCTGTACCTCATCTACTCCCAGGTCCTCTTCAAGGGCCAAGGCTGCCCCTCCACCCATGTGCTCCTCACCCACACCATCAGCCGCATCGCCGTCTCCTACCAGACCAAGGTCAACCTCCTCTCTGCCATCAAGAGCCCCTGCCAGAGGGAGACCCCAGAGGGGGCTGAGGCCAAGCCCTGGTATGAGCCCATCTATCTGGGAGGGGTCTTCCAGCTGGAGAAGGGTGACCGACTCAGCGCTGAGATCAATCGGCCCGACTATCTCGACTTTGCCGAGTCTGGGCAGGTCTACTTTGGGATCATTGCCCTGTGAGGAGGACGAACATCCAACCTT-CCCAAACGCCTCCCCTGCCCCAATCCCTTTATTACCCCCTCCTTCAGACACCCTCAACCTCTTCTGGCTCAAAAAGAGAATTGGGGGCTTAGGGTCGGAACCCAAGCTTAGAACTTTAAGCAACAAGACCACCACTTCGAAACCTGGGATTCAGGAATGTGTGGCCT-----GCACAGTGAAGTGCTGGCAACCACTAAGAATTCAAACTGGGGCCTCCAGAACTCACTGGGGCCTACAGCTTT-GATCCCTG-------------ACATCTGGAATCTGGAGACCAGGGAGCCTTTGGTTCTGGCCAGAATGCTGCAGGA-----CTTGAGAAGACCTCACCTAGAAATTGACACAAGTGGACCTTAGGCCTTCCTCTCTCCAGATGTTTCCAGACT-TCCTTGAGACACGGAGCCCAGC--CCTCCCCATGGAGCCAGCTCCCTCTATTTATGTTTGCACTTGTGAttatttattatttatttattatttatttatttaCAGATGAATGTATTTATTTGGGAGACCGGGGTATCCTGGGGGACCCAATGTAGGAGCTGCCTTGGCTCAGACATGTTTTCCGTGAAAACGGAGCTGAACAATAGGCTGTTCCCATGTAGCCCCCTGGCCTCTGTGCCTTCTTTTGATTATGTTTTTT-AAAATATTTATCTGATTAAGTTGTCTAAACAATGCTGATTTGGTGACCAACTGTCACT-CATTGCTGAGCCTCTGCTCCCCAGGGGAGTTGTGTCTGTAATCGCCCTACTATTCAGTGGCGAGAAATAAAGTTTGCTTAGAAAAGAAACATGGTCTCCTTCTTGGAATTAATTCTGCATCTGCCTCTTCTTGTGGGTGGGAAGAAGCTCCCT-AAGTCCTCTCTCCACAGGCTTTAAGATC s canFam2.chr12 4073488 6855 + 75515492 TGGAGGTCACCTAAGGT-GGGGTGAGGTGAAGGACATTCTTCACGAGTGAGATGAGACTTCATCATATGTGA--GCCCAAGGCAATATCCCTAAGtaggggaaccatgacattcatcttccaaaccaggacacttttgagagcaaaagggagatccatgaacattttcaccaggacaacaggcatcaaccagaatgtcccaggcaaaggg-atatataatGCAACTTCTTGATCTAAAACCTGCCAGACGGCCAGGAAAGTACACACACGGGGACAAGTGTGATTTGAACCATTTGGGACAAGGCTGGGGGTATACGAGGAGGAAATGGGCACAGAGAGTAGCCTGTGATCA----ATGGTGCAGAGGTGTTCTATATAATGGCTCTTCAAGGAACCTGGCCTCCAGCCCACGCCCCAGCTGCTCC-CTTCCTCCTCTCCGAATTGACTGTCCCTTCTCTGGAACTCCTGGGCCTGACCCCGCTCGCTCCCTGGCCCTCCCAGCCCACGGTTCCCCTGACCTG-CTCCCTTTCCCAGAACTCAGTCGTCTGAGCCCCCAGCCTGTGGTTCAGTCCTAGGCCTCAGCCTTTCCTGCCTTCGACTGAAACGGCAGCATCTTCTAAGCCCTGGGGGCTTCCCCGGGCCCAGCCAGGGGCCTAGAACCCGCCCGC---CTGCCACGCTGCCACTGCCGCTTCCTCTATAAAGGGGACCCAGGCGTCCGG-CCCAGGCACCCAGCCTAGCAGGTGAGACTCTCC-GCCCGTCGTCCCCGTGGGTGGC----------------AGACC-CCGCTGGGCACTCTGC--CCCTCTGCCTGCGCCCCAGCCCC-CCAGTACCT-----------------CCTGCCTGGGGCTGGGCCTGGGTGGGTTCACTGTCGGTTTGTTCCCCTCCCTCTGATGCTTCATCAATCAGACTTTCTTCTCTGTCTCTGTCACACGTTCTCTGTTTCTACCAC-ATACCTCTCTGTTCCCCTCTCGTGTCTGTTTCTCTTTCTGTGCCCCCCTTGTTCAGCCGGGCTTTCCCTGACTGCATCCTGTTCCCTTCTCTCGCTGCCCGGTCTCTCCCGGG------------CTCTGTCCGCCGGCGGGAGGCCCGTCCTCCGCCCCCCAGCCCCGCCCCGCTCACGCTCACCGCGCGGCGCACCACTCACCGGCTCTCTCCCTGCAGGTTCTCCCCATGACACCACCTGGAAGGCTCTACCTCCTGAGGGTGCGCAGCGCCCCCGT---CCTCCTCCTCCTGGGGCTGCTGCTGGGACTGCCGCCTGGGGCCCAGGTGAGGCAGCAGGAGAATGGGGGCTGCAGGGGTTGTCCAGCCACACTTTGGGCCTTA-AGCCACCCTCCACCCTTTTGTCCTCTAGGGGTTTCCTGGTGTCGGCATCTCACCCTCGGCTGCCCGGACTGCCTACCAGCACCCTCAGAAGCACTTCATACAAGGCACCCTCAAACCTGCTGCTCATCTTATTGGTAAACAGC-ACCTGGCGCTCTGGACATGTGGCTCCCAACTCTCCTCCCACACCCCCTTCAAGGGACCAAGCATCTAGTGCACTTCTCCCCTAACTTCCCCCACCCTCCCACA--TAGAGGTATCCCACTCCCATCTGTCCTCCCAGCCACCCCCAGGAACTCAGCC---CAGTACCTTCTTCCTCAGGGTTTAAGACTGCTGACACCCCAGGTTCTTGA----CCCCTCCTGTTCCCTCTTTCTCCTCCTAGGAGACCCCAGCATCCAGAACTCGCTGCGCTGGAGAGCAAACACGGATCGTGCCTTCCTCCGCCATGGCTTCTCTCTGAGCAACAATTCCCTCCTGGTCCCCACCAGTGGCCTCTACTTTGTCTACTCCCAGGTGGTCTTCTCAGGGGAAGGCTGCTTCCCCAAGGCCACCCCCACCCCACTCTACCTGGCCCATGAGGTCCAGCTCTTTTCCTCCCAGTACCCCTTCCATGTGCCTCTCCTCAGTGCTCAGAAGTCTGTGTGCCCAGGGCCACAGGGACCTTGGGTGCGCTCTGTGTACCAGGGAGCTGTGTTCCTGCTTACCCAGGGAGACCAGCTATCCACTCACACCGATGGCATCTCCCACCTACTCCTCAGCCCCAGTAGTGTCTTCTTTGGAGCCTTCGCTCTGTAGAA-------AAATCCAGAAAAAAAAAAT---TGGTTTCAAGACCTTTTCCCCATTTTGCCTCCATTCTGACCACTTCAAGGGTCACCGT-GCCTCTCTTTTGACCCTTCCAATAGCCTCAAGTCTCCCCTGCTCGAGTTACCTGGAGCTTCCAAAGAAGGAATTCTAAGGCACTCCAGGGGACCATACCTCCCTTCAGCATACCCCA---ATGCTAGGCTGAGGAGTTCGAGTTCTGCCTAGAAATTCCTGCC----GGTTCTCCAACTGTCCTACCAGTCTAAGGAGGACCTAG--CCATGGACATGGAGGGGGCAGACACCAGGAGGAGCTTGGGTGGATAACAGAAGGCAGGGGAGGGGGGATTATTTATGAAGGGGaaaaaattaaattatttatttatGGAGAATGGAGGGAAGGAAATAATAGAAGTCCACCAGAagagagagagagagagagagagaAATATGCCCAAGAGATGAAGAGCAAGAGAACATCGGCATAAGGATAACCCAGTGAAAGAGAAACCAAGCATGTCTGAGACACCAGGGAGCTCTAGAAGGAAGCAAAGGACTCTTCAGATCAACCACTGCTTGACTAGACATCCCATGAGGAGACATCTGCACCTTCAACGAAGCCCAATAAACCTCTTTTCTCTGAAATGCTGTCTA----TGTCTGTCTGTCTGGGAGGGGAGAATTTTCCTGG-TCTCAAAGAAATGGAAGG-GGGACAGGGGCCTCAGAAGAGACAGTAACTGTGGAGCTG-CAAGGAGATGAAGGGGCCTAAGGAGCTTGGGGGGCGAGGGGGGATGTGGCAGGATCACAGGGGTGAGGCAGCCAGACTGCT-CAGGGAAACTAAAGGATAAGCTGGGAAGAGAAAGGAAAAATAAGAGCCCAAGGTCTGCAGGAGTGGAGGTCAGGGCCCGGTGGGCTCAGACGGCTAAGTGTGGAGGCTCAGAGGAAAAGGGATTACAGGAGTCCTCTGGGGAGAAGCGACCACACC---------------------------GAAGGCTGGGCACAGGGACCCTCT------GGAAGAATGGCTGTGCA-AGGGCCCTAAGGAATGGGAGA-CCCCCAGGTTAGGGGGGTGGGGAACATGGGAGACATTTTAGGAGACATGGTCACGGTCACACAGAGGGGCTCTGACGGCTAGGGCTATCTCCAGAAATCTGGGGGCATGGAGTTCTTTGGGACACAAGGCCACACACAGGAGCTCTGACAGAGGAGAGCT-CATGCAAAAA-TCGGGG--CTCAGAGTCCCTTGGAAGCCAAGACTGAAACCAGCACTGCTCAGTTCCCGGTCAGAATGAAAGGAGAAG-CCTGCCCTCGTGGGGT----GAATTCCCAGGCTTGATTTCGCTCCCACAGGGGCTGCCCCGGGTGGGTCCCTGCCATTTACCGCCCCTCCCCAGCCCATCAGGGATCCCATCCACATCTCCAGCCTCATGCTCCCTTCTCTCAAGCTCCC--TTCCCCCCCCCCCCAGGGACCCAA-CACACGTGTCAGGACCCTGCATAGCTCC-CCCTCCAA----GCTCTCTCCCCACCAAGGACTCAGCTTTCTGAAGCCCCACCCCTTGCACCTTTCTGGCTCTATACCTACCAAG--TCCAGTCTGGAAATCAGAGGAAAACAGGCCGCAGACCTGAACCTCAGGAAAAAAATGGAGGGAATGGGAATTG-GGGGCAGAGGGAAACTGGGGTCCAGTCTCCAGGGTCCTACACAATGTACACAGCAGTGACTGGCCCAGGAAGTCTCCCTCAGAATCCGAGGGGGGCGAGTAGGAAGT---------ATCCTTGATGCCTGGGTGTCCCCAACTTTCCAAACCCCCGCCCCCACGATGGAGAAGAAACCGAGACCGAAGGTGTAGGGCCC--CACCGCTTCCTCCAGATGAGCTCATGGGTTTCTCCACCAAGGAAGTTTTCCGCTGCTTGATTGAGAGCCTTTCCCCGCCCTCCTCTCGCCCCGCGGGTATATAAATGCAGCTGTTTGCACACCCAGCCAGCAGGAGCTCCCTCAGCGAGGACACCAGGGGACCAGCGGGGAGAGAGC-ACGCAACTCCAGAGGCCCCTGGAAATAACTTCTCAGACGACGCCCCCCCAGACAAGCAGCCAGGC-GATTCTCTCCCTCTAATATACAAGGCCCCAGGGCTCTACAGTCTCCCCACTGGACTTGAGCCCCTCTCAGAAGCACACCATGAGCACTGAAAGCATGATCCGGGACGTGGAGCTGGCCGAGGAGCCGCTCCCCAAGAAGGCGGGGGGCCCCCCGGGCTCCAGAAGGTGCTTCTGCCTCAGCCTCTTCTCCTTCCTCCTCGTCGCAGGGGCCACCACACTCTTCTGCCTGCTGCACTTTGGAGTGATCGGCCCCCAGAGGGAAGAGGTGAGTGCCCCACGGAGGACTTGGCTCATTCTCCCGCC------------------------AGGGAGGGTGGTGG-----------------TGCTGGTGGGGACC-ATTgagagaggaaaatgtggagaaagatggggaggcagaaggagatatggggagagatggaagagggagagcgagGA----------------------GCACATGGAAGATGCTCATGGATTGCTTCTtgaatgaatgaatgaatgaatgatgaatgaatgaGCACGCAGACAGACATATGTAAAGAGAGATGTGTGGAGAGATGTGGGGTGTGGGTAGAGAGATGGGGACAGAA-CAAGTGATATGAATAAAGATGGTGAGACAGAAAGATATGGACAATATGAGAGAGAGATAAGGAAAAATGTGAGAAAAGAGATAAGGAAAGATGAAG-----GTGTCTGGCTCATGGAAGCCACTCCGCGAAAGTGTTGTGATATG-------GATGAATGGACAAGGGATGGATGG-GAGAGAAAACTAAAG---TCTGAGCT----GCATA----------------AGCTGTTTCTCCTATAGGGGTGACTTGCTCTGATGCTAAACCTCCTTCTTCTCCCCAACAGCTCCCAAATGGCCTCCAACTAATCAGCCCTCTTGCCCAGACAGTCAGTAAGTATCTCCAAAGCCTCTCTCCTCATTCTGACCTTGTGT--GGGAGTG-----AATCCTGGGAGAGAAGCAG-GAGGGAGATTCAG-GCACTTGTTTGAGGGGAGGAGGCATGGAGGTCAAAGTAGTGGGATCTTTTCCAGGAAGCTTAAGGATCTCACCATTTTCTTTCCTCTTCCCTCCTCAGAATCATCTTCTCGAACCCCAAGTGACAAGCCAGTAGCTCATGTTGTAGGTAAGAGCTCTGCAGAGGCAACTGGGTGGGGGATGGGGAAGCACATCGGCTATTGAGGGATAGGATTTGGGGGCTGACCCCAGGCTGAGGGTAAACAGACCTTAGAGATGGTATGAGAGGGACTCACTGGCCTTGAGGC------------------------------GGATACTCAGAATCTCATGGCCAGATGGTATGTGGGA----AGGCAGAGGGGACAGGAACCGGATGTGGGGGGGGGGGCAGAACCCGAGGGCCAGGATGTGGAGAGTGGAACTGACAGGGGTCACACTGACTCACCCCTCTCTCCTTCTCTTCTTCCCTCCAGCAAACCCCGAAGCTGAGGGGCAGCTCCAGTGGCTGAGCCGACGTGCCAATGCCCTCCTGGCCAACGGCGTGGAGCTGACAGACAACCAGCTGATAGTGCCGTCAGATGGGTTGTACCTCATCTACTCCCAGGTCCTCTTCAAGGGCCAAGGGTGCCCTTCCACCCATGTGCTCCTCACCCACACCATCAGCCGCTTCGCCGTCTCCTACCAGACAAAGGTCAACCTACTCTCTGCCATCAAGAGCCCTTGCCAAAGGGAGACCCCAGAGGGGACCGAGGCCAAGCCCTGGTACGAGCCCATCTACCTGGGAGGGGTCTTCCAACTGGAGAAGGGTGATCGACTCAGCGCTGAGATCAATCTGCCTAACTATCTGGACTTTGCCGAGTCCGGGCAGGTGTACTTTGGAATCATTGCCCTGTAAGGGGGTAGGACGTCCATTCTTGCCCAAA-------------CCGACCCTTTGATCACTCACTTCCTCTGAC-CCCTCACCCCCTTCAGGCTTAGAAAGAGAATTAAGGGCTCAGGGCTGGGCCTCAAGCTTAGAACTTTAAACGA---------CACTTAGAAACCTAAGATCCAGGGATGTGAGACCCCGATGACATGACACAGCACTGGCCACCACCAAGAATTCAAACCAGGGCTTCCAGCACTCACTGGAGACCTCAGGTTTGGATCCCTGAATGCAACTTGGAATTCTTGGAATGTAGGGGTCAGGGAACCTTCAGTTCTGGCTAGAACACTTCAGAACAACCCTTGAGAAGATCTCAACTAGAATCTGACATGAGTGGATCTCACACCTCCCTTTCGTCATATGTTCCCAGACTCTTCCTGAGAAGGAAAGCCCAGTGACTCCCACGTGGAGCCAGCTCTTCCTATTTATGTTTGCACTTGTGAttatttattatttatttattatttatttatttactgatggatgtatttatttGGGAAGTTGGGGTGTCCTGGAAGACCGAACGTAGGGGCTGCCTTGGCTCAGACGTGTTTTCTGTGAAAACGGAGCTGAACTCTAGGCTGTTCCCACCTGGCCTCCTGGCCTCTGTGCCTCCTTTTGCTTATGTTTTTCAAAAATATTTATCTGATAGAGTTATCTAAACAATGCTGATTTGGTGACTGACTGTCGCTACATCGTGGAACCTCTGCTCCCCAGGGGAGTTATGTCTGTAATCGCCCTACTGGTCAGTGGCGAGAAATAAAATGTGCTTGAAAAAGAAACACAGTCTCTTTCTTGGAATTAATTCTGAATCTTCCTCTCCTCCGGGGTGGGAGGCCACTCCCTGAAGTCCTCTCTCTATAAGCCTTCAGATC a score=21043 s hg19.chr6_ssto_hap7 2877006 547 + 4928567 CCTCGGACCCAGTCCC--ATCCTTAGACTCCTAGGGCCCTGGAGACCCTACATA-AACAAAGCCCAACAGAATATTCCCCATCCCCCAGGAAACAAGAGCCTGaacctaattacctctccctcagggcatgggaatttccaactctgggaattccaatccttgctgggaaaatcctgca--------gctCAGGTGAGATTTCCGGCTGTTGCAGCTGGCCAGCAGTCCGGAGAGAGCTGGAGAGGAGCCGCATTCTCAGGTACCTGAATCACACAGCCAAGGGACTTCCAGAGATTCGGGT-------GTctaggcttcaaatcaccctgtcctaactctgcaacctgaaccagccacttaacct-atctatccaatggggataggaatgtccaccacacatagggc----atgtgagagaaggcctgacctccatcagaggacctcactcagcccttggcacagtgggcacttagtgaattctggctTCCTTCAACCAGTTTCCAGCTGTTCTATCCCCTTCCATTCTCTCAGTGGGTGAAATCGAAGAGACTGAGGACAATAAAGAA s canFam2.chr12 4080816 522 + 75515492 CCCTGAACACGGTCCCCACTCACAGGACTACTGAGGCTCAGGAGACCCTCCGTATAACAAAGCCCTGTCAAACAGGCCCC-TCCCCCAGGAAACTGAAGCCTGAACCTAA-TACCTCTCCCTCAGGGCGTGGGAATTTCCAACTCTGGGAATTCCAA-------TGGGGAAGTCCTGCACCTGAAATGCTCAGGTGAGGTTTCCTGCTGTTGCTGCCTGT----------AGGAGAGTCTGGGAAGGGCCACATTCTCAGGCATCTGAAT--CACAGCCAAAGGACTTCCAGATATTCAGATCGCCTGATCCTAGGCTCCCCAGCA----GCCCTAACTGTACAACATGAACCAGTTACTCTGCCTCATCTACCCACCAAAGACAGAAACACATCCCGCAAATGGGTCCACAAAAGAAGAGAAGGCCCAAGCTACATCTGAGCACGTAGCATAGCACTTGGCATAGTAACCACTCAGTGAATTCTGACT----------------------TTCTATCTGCTTTCA-TCTCTCAGTGAGTGGAATTGAAGAGACGAAAGAAAATTCAGAA a score=4959 s hg19.chr6_ssto_hap7 2877705 129 + 4928567 ATAGGAATAAGATGTGGGTGAAGGACTCACATGCCGGCTTGGTCCCACTGGTCTTTGTGGTGAAGGAGGGGAGAGGTGA-GAGGTGGGTAATCCGGAAAGAGAAAAGCACCCCCTCCCTGGATGAAGGCT s canFam2.chr12 4081338 126 + 75515492 ACAGGAATAGGATACGGGTGAAGGACTCACATAGCAGC----TCTCACAGATGTTCTTGGTGAATATGAGGGAGGGTCATGAGGTAGATGGGCTGGAAAGAGAAAAGGGCCCTCTCTCCTCAGGAATTCC a score=140620 s hg19.chr6_ssto_hap7 2878171 3662 + 4928567 TATGGAGACGGAAATTGAGCCCCCCTAGACTGGGAGCCCCCACTGAGTTCGGAAATTAGGCTTTACCTCCAGCCCTGGGGTGCCAGGCAAGAGAAAACCATGTGGTAGGCTGAGGGGGTAGGGTGACCCATTGGGGTGACCTAGATAGGGCCTTGGGTCACCCTCTGCCTCCTCCAGCCTGTGGCTGAAAGTCAGCCATGAAGTA-ATG------GGGGAC-ACTGTTACTCATCCCAGAAGCACCCACACTTACTCAC--TTTTGGGAAGGGGGACCTAAAGTGTGAAAAAAAGGTGAGGATTTTCCGTCTCACCCTAAATGGGACACCCTAAGTGGGGCATCGGTTTTTCCTCCTCCCCAGAACTTCCTGGTGTTTTCAGGCACCACAGGCTCCTTCCTGCCATCCCCATCTCTCTCTAATATTCTCCCCTTCTTTCTCCTTCAGCCTCCTCCCTTCAGACCCCATGAGCCTTGAATTAAGCTCCTTGGAGGAGAAGAGTTGACTGTCGGGTAGGAGACAGAGAGGCCTTCAGGCAGCTCTAGGGGGAGAAGTGCGGGGCCCCTCCAGGCTTCATTCCTCTGTCATGATAGGGGCTTACTCTGCTGCTGGGCCTTTCTGAGTGGTGCTTGCTGGGCTCTGTAATGACCCCTCTCACTGTTGGGGGGTACCCAAGAGAAAAGAGTATGGTGCAGAGTCTGGTTGGGACCATGTGGCCCTGAAAATCAGGATGCCTAGAGAAGCTTCGGAGTTTGAGAAGTCCCCCTTCCTCCCACCCTCCAACTGGGC---TAATGGTGGGGCCTGGCCATTCAGAGGCAGGGAGGGGGTGGGA--CAGGCAGACCATCATCCCTAGGAGCAAAGGCCATACACTGTGTTGTGATGAATTGTTTCAAGCAACCAGAAGAGTACTGAGAATATTTAACCCGCACCCGTGCACCCACCCTGAATTAAGACGTGTGTCGCAACTCAGCATCTTTA-TCGGCAGCACTGAAGCTTTCCATTCTTTATTTTCATCAGGTTCAAAATCAATTTCCAAACAGTCTCCTACATTTTTCCCACTGCCATGGGGTCCTGGGCGTCCGGGCCCCCAATATTCACGCACTCGCACCACGCACTCATATTCCCTCACCCCACCATCACGGCCCCAAAGAAGGTCTTCCCTCTCGCGAAGTCCACCATATCGGGGTGACTGATGTTGACGTACACCCTCTCGCCCCTCCGGAGCTGCACCAGGCCGCCGAACCCCACGCTCGTGTACCAGAGAGGCCCGTACCCTTGTCTCCTGGCCGGGTCCAGCACTGGAGTCACCGTCTCGGCGCCCTCGAGCAGCAGCTCGGGAGTGCCCGGCCCGTAGGCGCCCCCCGCCCGGTACAGAGAGCTGCGCAGCGTGACCGAGCGGCCCTGGGGGTccccgccgccagggggcgcccggccccggTAGCCGACGAGACAGTAGAGGTAATAGAGGCCGTCCTGCGGGAGCGCCAGCCCCTCGGCGTCCGAGAACTGCGTCCCGCTCGTCAGAAACGCCTGTTCCTTCGTCGTCTCCCAGCCTAGCCCCTGCCCCTTCAGCGGAGCGCCTGCGGAGACACGGGC----CGACGCGC-------TCTTGGGAATGCGATCCTAAAGGCTTGGGACTTCTGGG-------GAAGTGGC-----GGCTTTTA-GCCCCTGCGGGAGCCGAGCCGGGCCGGGGGAGGAGGGATGGTGCTGTTTCTGGGATGAGTGCGAGTTGGGGGCCGAGGGAACACGGATGTGGGGTGCAGAACGCTGTAGTGGGGACCTCCAGGCCGGCTTTTGCTTGCACCGGAGGGAAGAAGAAACTACACTGCGGGGACGAGCGTAAGAGTGGGCAC-GAGCGACAAAAGGTCGTGAAGCGGGTGGGAAACCGAGCACTGGAATCATGGAGCCGAAGGACTCTG-----GGCGAGCAGAACTGGAACCTTCGGATTATTTACACTCTTATTCAGGTCTTGGAGGTCCTTACCTATGAGGTGGGCAGCTGGGAGCCCGGGGCTGAGATCTGTTTCTGGCTCCTCCTCTGGCAGCTTCTGAAACCCTGGAAGGGGCAAAGAGTCCACGATTGGGG-GCAGGGCAGCCACCCATGCAGGCTACCCTTGAGAGAACAGGGCGCAGGGATGGGGAGCCTGGATTCCTAGAGGAAGAGGTATCTGGGGACGC----AGCAGGGAGCTGGGAGCCCCTGAGGGTCTGAAGC-GGGGAAGGAGAGACAGTCTGCTCTTACCCAGTCCTTGCTGGGCCTGTGC------CCCGGGGTCGGCCGTCTCCGTTACCTGGTTGGGTGGGGTCACAGTGCCCAGAGTTCAGATTCAGCTCATGTCACCCCTACCCCTCTGAAAGTGGACCCAAGCTGCAGGCCTGGGGTTT-CTCCTACCAGCACCATCCCCAACACACACCTCCTTAGAAGGGAGAACAAGCAAGGCATAGGTACTTGGGCGGAGAAACA--------GATGTACCTCGGGAAGAGGAGAGGAGACA-------------CAAGGGGCTTA----TGTCGGGACACAAGCACAACATCACAGGAACATGGAAAGAGAGTCAGCAAAG----AGACAAGACATCCCCACCAGGGACAGCCGAGCCAGCTGAGCCAGAGGGGGCAAAAGA-CCACAGGCACAACCAGAGGGAGCCAAGCATCCGCAAGATACAACTCTCCACCAGGGCCTGTTGCAGCCACTCACCAGTCCTCCCT---GATCCTGGGGCACTAAGGCCAGCACAGCCAGGACAGTGATAGGCACCGCCAGCAACAAGGTCACCAGAGAAGTGGCTCCTGCCACAGCTAGCAGGAGGGAACCCCTCCCCTGGAGCCTCCCACCCCTGCCCTCCAGCCCCAGTGCCCCCATTGAGACTGAACCAGAGCCAGAGCA-GGGGGCTTTCATACCTCAGGGACGGGCCCACCCCCTCCCTGTAGACCTGCACACCTGGCTGGGACTTTCCGCACACCCCTGCTCCCCTCACCCAGCTTCCTGTTTACCCAGAGCTGGGGTGGGGCAGCTGGATGCCTGGGTTCTCTGAACTGGGGAAGAAGTTGAGGTTAGGGAGACAGGCTCTCAGGGTGgaaccaaaggggtctttagacatcttctggctcagcagagagagaaactgaggcccagggagggaaggtagcttgcaggaagccagtcagcagagctgaa--atgagaacacagatctccaggtttccaatgtggtttgcattcttctataccCTCAAGGTAGGTGCTGGAGGAAGAGCTG-ATCC-CGTCTCTGAGGTCAAGGGCCGGACT---AGGACAAGGACTGGAATCTTGAGGGATGGATGTCTGGGTTCCCTGAGAAGAACTGATTCCCATACTGGGCTGA--CCTCCTCCCGTTCCCTTGCTCATCTCCAGCCCCCTGTGCTGAGTGAGAAAGGGAG-----------------------AGGTAA-----GCCTTAGCCTCACCACTGACTACTGACTCACTAAGGAGGGATGGAAATGGAGCTTTACCTCCCTTGCTACAAAAAGTAAAGACAGATGGACGA----GGCATACTCCCACCCTCAGAGAGCTTCCAAGTCTACAATGAGCCCTATCCATTAGTAGGTGCTTACTAAATGTTTATACATAAATGAATAAAAGGACAAATAAATGCAGGAATAACCAAAACAAAGCAGCAAGGACCACATGAATGGTAGATGTAGGCAGCATGAGTGGTTAAGAGTCAAGGGAGTAg s canFam2.chr12 4081668 3465 + 75515492 TCTGGAGACAG---TCGAAGATCCAGAGGGTGGGAG-CCCCACTGGATTC-------AAGC----CCGACAGCTCTGG-----CAGGAAGGGGAAAACTGTGTGGTATGACGCAGGGGTGGGATGGCTCACTGGAGTGACCTAGATAGG-----------------GCCTCCTCCAGCCGAGAGCTGAAAGTCGGTCATGGGGTGCATGGGGTGAGGGGACTGCTGTTACTCG-CCCTGGGGCCCCCACACTTGCCAATGATATATGGAAAGCAGACCTGAAGTGTGAACGAGGGGTGAGGACTTTCCATCTCACCCT-----GGACA--------GGGCCAGTGGT-----------CCCAGAGTTTC-----------------------CTCCTCCCTTTCCTCTCC-----------AGGCTTACCCAGCCCCTATCTTTCCACCTCCTCCC-TCACACCCAATGAGC------TTAAGTTTTTCTTTGGAGGGCAGTTGACT---GGGTAGTGGCTGAAGGGGCCTTTGGGCAGC----AGGGAAGAAGTGCTAGG-CCCTCAGGGCTTCATTCCTTCTCCC---------CCAGCCCTGTTG------CTCTGGGGAAGCTGCTAACCTTCCCCTGTCACCATCCTGCTCTCTGATGAGAGGGACGCCAGAGAAAAGCCTGCCCTGTGGAGTCTGGGGAGGACCAGGTGGCTCTGAGAAGAAGG-TGCTTGGAGATGCTTCGGGGTTTGAGGAGATGCCCTTCTTCCC-CCTTCCCACTGGGCTAGTAATGCTGGGGCAAGTTCATTCAGAGGCAGGAGGTGGGTGGGAACCGAGCAGATGGGCTTCTCAGAGGGCAGAGGCCAGAGGAAGGGAT---ACGAATTGTTTCAAGCAACCAGAAAAA----GAGAGCCTGTGG-GGACACCTGTGTA-GCGCCCCGA--CAAGACCCG-GGCGCAGCGCGGCACCTGTGTTTGGCAGCACTAGAGCTTTACGGACTTTATTCTCTTGGGGCTCGCCAGCAGATTCCAGACGGGCCCCTACACTTCCCCGG-----------------------------------------------------------------CCTCAGCCCACCATCACCGCCCCGAAGAAGGTCTTCCCCCGGCGGTAGTCCACCATATCGGGGTGACTGATGTTGACGTACACGCGCTCGCCCCTGCGGAGCTGTACCAGGCCGCCGAAGCCCACGCTCGTGTACCAGAGCGGCCCGTACTcgcgcggccgggccgggccgggggccggggTGACGGTCTCCGCGCCCTCCAGCAGCAGCTCGGGAGACCCGGGCCCGTAGGCGCCCCCCGCGCGGAACAGGCGGCTGCGCAGCGTCAccggggggtcgggcgggccccggccggcagggggcgcccggccccggTAGCCGACGTGACAGTAGAGGTAGTAGAGGCCGTCCCGGGGGAGCGCCAGCCCCTCGGCGCCCGAGAACAGCGTCCCGCTCCTCAGAAACGCCTCCTCTTTCTTCGCCTCCCAGCCGAGGCCCTGCCCCTTGGTCCAGGCGCCTGCGGAGAGACGGGCCTGTCGGCGCCCGGGGCCGGCCTGGAGGAGCGGGCC---GGGCCGGGGACGTCGGGGTGCGCCCGGGACAGCACGCGGGCGTTTACGCCCCCGCAGGCAGCG-GCCGGCCCGAGAGCGCGTGGGCGCCCCCGCCGCGGCGACGA---CGGGCAGGGGCT---GGGGCCCCGggggcggggcggggccgggcggggcgCGGAGACCCA-GCCGCGTTTTGCCTGCTCC--AGGACGGGAGAGGCTGGGATGC-GGGAGGAGAGGAAG-GTGGGCGCTGTAGGGCCCAGGGGGGTGATGCAGGTCCCACTCCGAGCCCCGCAACAGCAGAGCAAAGGGAGTCTAACTGTGACGAGCAGAACCGGCCCCCTGGGACCACCTAC------------------GAGGTCCTTACCTATGAGGTGGGCGGCGGGGAGCCTGGAACTGAAATCTGCTTCTGCTTCCTCCTCTGGCAGCTCCTGTGACCCTGGAAGAGGGGAAGAGTCCACTATTGGGGCCCAGGGTGGTCATCCATGCGTGGTGCCCCTGAGAGGACAGGGTGCCCGGGTGGGA---------TTCCAGAGGAAGA-GTACATCGGGGTGCAGATAGATGGGACCTGGGCATCCCTGAAAGGCTGGAGCAGGGGAGGGGAAGATGGTCTGCTCTTACCCAATCGCTGCTGGGCCTGGGCCTGCATCCCCGGGTCAGCGGTCCTGGTTACCTGAGCAGGTGGGGTCACAGTGCCCAAAGTTCAGTTTTAGCTGACGCCAGCCCCACCCCTCCCATCGCAGACTCAAGCTCCAGGCCTGAGGTGGATTCCCACCAGTCCTATCCCCAGCACACATCTCCCTGAGAGCGCCAGCAAGTGAGGCATATGGACTTGGTCAGAGATGGAGGGCTGAGGATGTG--TTGGGGAGAGGAGAGGAGATAGCCACACAAGCAGGAAGGAGCTTGGAGCTAGCAGGACACA---ATAGCGTCACA-GAACATGGAAGGAGGACCAGCAAAGAGACAGACAAGGCATCCCCACCAGGCACAGCCAAGCCAACTGAGCAGGATGACACAAGAGACCCCCAGGCATCGAGAGAGGTAAGTGGGCATTAGC---ATACAGCCCTT--CTAAGGCTGGCTGCATCTACTCACCAGTCCTCCTCCTGGCTCCTGGGGCACCAAGGCCCTCACAGCCAAGACAGTGATAGGCACAGCCAGCAGCAGGGTCACCAGGGAAGTGGCTCCTGCCACAGCCAGCAGGAGGCAGCCCTTCCCCTGGGGCCTCCTACCCCAGCCCTCTAGCCACAGTGCCCCCATTGAGACTGAGCTAGGGCCAGGGCAGGGGGGCTTTCATACCTAAGGGGTGGGGCCACCCCCTCCCCATAGACCCACACACCTGGCTGGGACTTTCCCCACACCCCTGCTCCCCTCACCCAGCTTCCTGTTTACCCAGAGCTGGGGTGGGGCAGCTGGATGTC-AGGTTCTCTGAACTGGGGAAGGAGTTGGGGTGA-AGAGACAGGCCTGCAGGGTagagctggagggggccttagagatcttctggctcag--------------------cGGGGAGAGATGATAGCTTACAGAAAGGCAGGAAGGAAAGCTGCATGAGGAGAACACCCAACTGCA--TTTCTAGGGCAGTCTGCATTCTTCTACACCCCAGTGATGGGTGCTGGAGGGAGGGCTGTATCCACATCCTTGAGGTCAAGCGCTGCAATAGGAGGACAAAAACTGAGGTCTTGAGGGATGGATATCTGGG-TCCCTGAGAAGAACTTATGCTCGCACTGGATTGATGCCCCCTTCCATCCCCTCACTTACCCCTAACGCCCAGAGCTTGCTGAGAAGCAGAGTTAAGCCAATCCACAGAAATAGTAGGTGAAAGGGGCCTCAGCCTCCCCACTGACTATTGACTCACTGAGGAGTGATGGAAAT-GAGTATTACCTCCCTTGCTCCACAGAGTGTAGACAGGAGAGCGATGGGGGCATGGCCCCAACTCCTAAGAGCTTCACTGTCTAAAGTGGGCCCCATCC-------------------ATGTTTATGAATAAATGAA-GGAAGGACAAATGAATGAATGAGGAAGCAAAATAGAGCAGCA--------ATGAATGGTA-----------------TGGTAGACAGTGCAGTGGG-AG a score=5052 s hg19.chr6_ssto_hap7 2882143 75 + 4928567 GTCAAGGGAAGAAAGACCAGGTCCAAGGAAGCTGGAAGTGGCTCCA-ATCATCTCCCCTTCTTGGTAACATCTCTA s canFam2.chr12 4085133 76 + 75515492 TTGAAGGGAGGAAAGACCAGGTCCAAGGAAGTTGGAGGTGGTCCCAGATCATGTCCCCTTCTTAATAACATCTCTG a score=3681 s hg19.chr6_ssto_hap7 2882218 87 + 4928567 TGTGTTTCCGTAATACTAATAATAATATAGCTGACCCACAAAATGCACTTAACATGTTTATGCCACTGATTTACACACTTTA---ATAAt s canFam2.chr12 4085400 90 + 75515492 TGCAATTAGGTAATAGTAATaataatgtagctgttatacaaatagcacgtagcatgtgcttgccaccgatccatgcactttatatatagt a score=8025 s hg19.chr6_ssto_hap7 2882597 156 + 4928567 AATAATTATAATCCTGACAAAAACCCTAAgaggaaactgaggtacagagaggttaagaaacttatggagctcacagagtcagtggcagaaccagaatttgaacccaggca-tctggctccagagccTTGATAACAAGACAGTTTAAAAACTGAATAC s canFam2.chr12 4085490 157 + 75515492 aattcttttaatcctgacaaaaactctacgaagaaactgaggtacagagaggtaaaggaacttatagaaagccacgctgtagtggcagggtcaggatttgaacccaggcagtctggctccacagATTTGACCACAAGACAGTTAAacacacacacac a score=9263 s hg19.chr6_ssto_hap7 2883383 170 + 4928567 tgtatgtaaaatttgccttcctcagg---ccagaaaagaaatggggaaataaatactgaactccagtcaatgttaagc-ttctgaagggtttagatgtaaaa--tgtactgatatttgtaattttaaaagatatt--taaaagtgagatggattgataaatatgtgataaagcaaata s canFam2.chr12 4085677 178 + 75515492 TGTATGTAAATCTTAACTTCCTCAGAACCCCAAAAAAGAAATGAGGAAATAAAAGCTGGATTCGAATCACTGATAAGCATGGtaaaaggtttagaggtaagatgtgtactgatgtctgcaactttgaaaggtatccataaaaatgagatagattgataggtatgtgataaagcaaata a score=101492 s hg19.chr6_ssto_hap7 2883856 2928 + 4928567 tgttaatagtagcatctaggtggtaagaatatgttcactgtacaattattctcatttcaccctatgtttgcactttttaataataaaatgtaaaaaaaacaaAACAAACAAACAAAAAACCCTGAATATTA--------TTCAGCATGGGGAACATGGAGGATGGGGAGAAGGGTGGGGGAGGAAGT---AGAAGGTTCTTGAATTTGGAAGGGGAAACGCAAATTAATATGGACCCACCCA-----GGCACCACATCTCCT-CCTCACCCCTTGCCTTACAGGCGCTCCCC---------------------------------------------------------------------------------AGTCTTCACCCTCCTCAAGGAGTGGGTGTGCAATCCTCCAGCACCCATCTCCTTCTCCATCACAGTGCCACTAAGAAGCCTTCACCCAGGT--CTCTCCAGAGAGCCTCAGGCCGCTGCCTTTACTTAGTTCTGTGTTCAATGCCAGAATGCTGCCTCCTACAGGAAGTCCACCTGTATTGCCCACACCTCCTTTCCTGTCACCAACTTGTCACCAACTTTCTGTCCTTGATCTATCCACAGGGCTCATGTA--------GATCTAGTATGGCTGCCTTTAACTCTCATGTTTGTTAATCAGACAGCCAAGCAGCCTGCTGCATAGAGCTGCAGAACACCAAGTGGGTCACCAGAACACCAAATATGCCAGAGCTCCCAGTCTGAACTGGAGCAGGGTACATGTGTCCACAGACATATGCCAAGATCAAGAGGTCTCAACAGATGCAGTGTAAGAGGTAATAGA-GAAGAGTTAATCAAGGAAGACACCTGAAGGTGGTGGGTGTTTGCTGACTAGTGGCAGGATCAGTGAAATGACTGGAGCTGAGGCAGATTATGGCCCTAGCTACAGGCCCAGAAGTTTGAAAAGAAAGATGTTGTAACCCTAACCCT-GGAGCCGAACTTCCTCTCCTAACAATGCTGGGGAGGAACCCAGGCTGGGGGAGAAGTTAAAGCCAGAGGAGGGGCAGGAATGTCTGAGGTGGCAACACTTCTCTTCAGCCAGACAGCACTGGCCAGTTTGGAGTCTGTCCATCCTGCAGGCCACAAGCTCTGGGTAAGCTGGGAATGGGCAGGGACCTTGGT---------------GGAAGGATGGTCACACCCCAGAGTGGGGTGAAGCTAAGATGAGGGGAGGGAGAGTATGG-GTTTGAGTTTCCCTGGGCCGTCGAGGAATCCTCTG---------AGTCTCTGCTCCCCAAAGAAATTAAAGACAATTCATTTCTGTGCCCACGGCC-CTTATGGC----------------CTCCACCTGCACTTCTGCTC-----------CCCACCCCCCAGAATTCCTCTTAAACCCAGAAGGGTCCCAGTTTCCAGACCCTAGTCAGTATATCTGGCTCTGGGG---TGAAGAGAACGGCCCCCTCTTCACCCTCAAACAGGAACCAGTGGTTGGAGGGGAGGAAGTGCCTGAGGGGAAGTTATGGGGCCCCAGATACTCCTCCATGCCCCACTTCAGCCCTAGCAGCATCTGCCTGTGGGAAGCAGCTCTCCACACCAGCCAAGGGGGCCCCCACACTCCCGCGCTGCTCTGCGGCTCAGGGAGCAGCCCACCTGCTGGGT-GTGCT-GATATCACCCTCCCTTCTTCCCCCCAGTGCCCACACCCACCCAGGCCCAGGCTCCTTCCCCTCCATCATCCCCTTACCAGCACCTAGAACCATCCAGGGCTGAAAAGTCCCCTCCAAACCACGTggtcagcccagggcagaggaa-agggctgggctctggagttgggcagagctggccttaaaccccagctccacc-tttctgggatgggtgacctagt----aaagtccaggcttgaatctcgggtctttacttgggcaac--gggcacc--atgataccctatgttctggggattagcagtgaggaatggaaagtgcccagctcagggttggcacataAGGGAGGCTCCCCAGCCTGGGAACGATTATAACAGAGGGcccctcacttcacagatgaggaacttgaggcaagtcaccagcccctgatcatttcgcctaaaagagcaaggactagagttcctgacctccaggccagtccctgatccctGACCTAATGTTATC---------GCGGAATGATGGTAAGTAAAGTGTCTCTTGCATCTGCATAGAGAGAGTCCTGGGAGCTTAGGAAGTGATGGGGAACAGTG-ATGTATGC---AGCTCATGACTAGGTGAACA---GGCCTCTG------------GGGACAGCTGGTACAG--GAGGGAA---------------------------------------------------AGGGACCTCACGGGAGGCCCAGAAACCTGGTAAGAGGTGAGGTATTAAGGTCTGGGATGGAGAAGCTCTGAGGGTATATTTTTCTGCCTCTAAAACTGTTGGAGAGGG-------------------AATCTGAGAAAGCTGCAACCAACCAGGAGGCTGGGGTACGCTGGA-GAAGGAATGGGCTTCCTAACCTTGAGCCCTCTTCCCTGAAGATATATG----TATCTA-----CGGGGGCCTGGGGCTGGGCGGGCTCCTGCTTCTGGCAGTGGTCCTTCTGTCCGCCTGCCTGTGTTGGCTGCATCGAAGAGGTGAGCGCTG----------CACTCCCTCCCTCCCCCTGCAGCAGTGCCCCCTGTGCCCCCACCCCCACACGCTTTCCCACTGCTTTCCCAGAACACTGCCTGGCCCTGGAGCCACTGGGAAGCCAACAGGGGAGTCCACGCCTGCTGGTGGGGGGAGCCCGGGAGGGCCCGGGAGAAGCACAAAGGGTGGGCTGTGTTGAGCTTCTTCTTTTCTTCCAGTAAAGAGGCTGGAGAGGAGCTGGGTGAGTCTGGGGACAGGGAAGGGGGAGGGCAAGAGAGATCCTGAGTGGGTGAGTGGGGAGAAGCATGGCTGAGCGCTGAGAGGAGGGTTGGGGACGGGAGACA-AGGAGAGAGAAAGTAGGAGCATGAGAGAGGCAGAGAAAATCGAGGCAAAagagaaagagaaaatgagacagaaacca-agagaaaaagtg-agacagaggataggagagacagggagaaaatg-agagtgagagagaca s canFam2.chr12 4085863 3010 + 75515492 tgtcaattttagaatataggtggtagggatatgttcactgtaaaattatttcaattttgttc--tgtttgaacatcttaataataaaaTGTGTGGGGAA--------------ATAAAACCCTGAATCTTATCCTGCTGTCCAACACGGAGGACACTGTGGATGGGGGGA-----GAGGGAAGAAATGCCAGAAAGTTTCTGAATGTGAAGGAGGAAATGTACATGCATATGAACGCAGGCATGGATGGCACCTTACCTCCTCCCTCAACATGAGCTCTCCAGTCTCCACCCTCCttttttttaatttaatttaatttaatttaatttattttattttattttattattttattttattttattttattttTTAGTCTCCACCCTCCTTAAGGA--------------CTCCAGCACCCATCTCCTTCTCTATCTCAGTGCCACTAACAGGCCTTCATCCAGGTTACTGTCCAGAAGTTCTCAGATCACGGCTTTTAT----TTTTGTGCTCAACATCAGAATGCTGCCTCCTACAGGAAATCCACCTAGATTGCCTACTCTTCTTTTCCAACC-CCAACTTGTCATCAGCTTTCTGTCCTAGA-CTCTCAGCAGTACTGAGGTACTCCTATGCATCTAGTCTGGCTGCCTCTGACTC---TGTCCGTCAATCAGTCAGTCAAGT-GCCTGCTAGATACAGCCTCAGAACACCAGGCAAGTTACC------CCCAAACTACCAGTGCTCCCATTCTGGTGTGGGAGCCTGGAGGTGTGTCTACACATATACATTGGGATCATGAGCTCACAGCGGATGCAGTGTGAGGCGTAATTGAGGGAAAGTTAATCAGGAAAGGTACCTAGAGAAGGTATACACTCATGGACTACTAGCAGGCTCAGCAGGCTGGCTGGAGCTGAGGGGGATTATAGGCTTGGTTATGGTCCTAGGAGTCTGAAAGGAAAGATGTCATAACCCCAACCTTCAAAGCCAAATTTCCTCTCCTGACAAAGCTAGGGAGGTATCCAGACTGGGGGAGACGGTAAAGCCAGAGGAGGGGCAAGAATGTCTGAAGTGGCAACAC--CTCTCCACCCAGACAGCTCTGGCCAGTCTGGAGTCT---CTACCCGCAGGCCAC-AGCTTTGGATAAGCTGGGAGAGAGTAGGCACCCTGGTAGGGAAAATGGGGGGGGGCGGGCAGCCACACCCCACA-----GTGAAGCTAAAATGAGGGAA--GAGAGTATGGCTTTTGAGGTTCCCTGAGCCCTGGAGGCACCTGCTGTCCAGCCTCTGTCTCTGCTCCCCAAAG-AATTAAATACAATCTACTTCTGCTCCCACTTCCTCTCATGTCTATCTCAGGCCCTCCTCTCCACCTGTGTTTCTGCTCCACAGTCCACACACACACCCCACAATTCCTCCTGAACCTAGGAGGGTCCTAGTTGCCAGACCCTGGTCAGTGCAGCTGGCTCTGGTGGCATGAAGTCAGCAATCCCCTCTTTGCCCTCAAACAGGAACCAGTGGTTGCAGGGCAGGAAGTGCCTGAGGGGAAGTTATGGGG-CCCACACGCTCCTCCATGCCACACTTCAGCCCTTGCAGGGTCTGCCCGTGGGAAGTGGCTCTCCACACCAGCCAAGTGGGGCCCTGCTCTCCTCAGTGGCTCT--GGCTGAGGGGCGGCCCCAGCTGCCAGGTAGCACTGGATACCACCCTCCCCACTTTTCACTAGTCCACACATATACTGGAAACCCTGTTCCTCCTCTTCCATCAGCCCCTCACCAGAACCTAGAACTACCCAGTGCTGGAGAGGCCCCTAGGAACCACCTCGTCAGTCTAGGGCAGAGGAAGGGGGGTGTGCTCTAGATT---------CTGGGGTTCAAGGCCATTTGTGCCATTTCTGGGCTG---GACCTGCTCCTAAGAGTCTGGACTCAAGTTTGGGttcctca-tcaggcaaaaggggcaccttttgata-cctatgttgtggggattagcagtgacaaatggaaagtgcccagatcagggttggcacattagtggggctcCTCAGCCTTGGGacagttgtaatggagggccccacgtcttacacatgaggaacttgaggcacgtgatgtggcccaggccacttagctgagcagagc-agggttacatttcctgacctccgggtcagtcttcAGTGCTGGACCTAATGACAGTTTGTGAGAAATGGAGAGAGGGTAAGGAAA---------CCCTCTGCCCAGGGAGGGTGGTGGG-----GAGAGAGGATAAAAGGCAGTGTATGTGTACTTTTACACAT-AGTAGGTGGGCAAGGGACCTCTGTGGGGAGACCCAGGGACAGCAGGGATGGCAGTGGGAAGCCTTCGAGGGGTGAGCGGTCGTCATGCGTAGGCCTGAGGTCGTAGGCCTGAGGTAACCCATGAGAGATGGGcacctctggt-agaggtgaggtaacccaatccaggttgaagaatccc----agcatgtttctcTGCCTCT-AAACTGTTGGGGGGGGGGGGTTGCAGAGACACCCAAGGCtgagcaggagg---atgagcaggaggatgGGGGAAGCCAGAGGGACAAACGGGTCT-------------CCCCTTCCCTGCAGGTTTATGCCCTTACCTATATGGCGGGAGCTTGGGGCTGGGGGGGCTCCTGCTCCTGGCTGTGCTCATTCTGTCCGCCTGTCTGTGTCGGCTTCATCGGAAAGGTGAGCCCCACCTTTACCCTCATTCGCCCCCCCCCCCTTCA-CAGAAGTCCCTGT---CCCATCCC---------------------------ATCCCACCCGCCCCGAG----ACGGAGAGTGCAAGTGAGGAA---ACACCCTCTGG--------GCCGGGGCGGGAGTGGGGGC----------GCCGGCC-TGCTGAGCTTCTTCTTTTCTTCCAGTGAGGAGGCTggagaggagctgggtgagtcc--ggaccggaggcggcgagggc------------------------ggcaggacg---ggccgagggccgcgaggcgaggcg-----aggcgacacaggggagggaaagcaggggcatgaaggaggcg---------gaggcgggagaggaagaggcagacagagggacgtaagagagaactggtgtagggaaaggaaaagggggcaagagagaggagacagagtcagagagaCA a score=23454 s hg19.chr6_ssto_hap7 2887060 730 + 4928567 ATCGCCTCCCATCAGCACCTTCTGTCCTGGTCCCAGGCCCAGGGCTCCTCAGAGCAGGAACTCCACTATGCATCTCTGCAGAGGCTGCCAGTGCCCAGCAGTGAGGGACCTGACCTCAGGGGCAGAGACAAGAGAGGCACCAAGGAGGATCCAAGAGCTGACTATGCCTGCATTGCTGAGAACAAACCCACCTGAGC-ACCCCAGACACCTTCCTCAACCCAGGCGGGTGGACAGGGTCCCCCTGTGGTCCAGCCAGTAAAAACCATGGTCCCCCCAC-TTCTGTGTCTCAGTCCTCTCAGTCCATCTCGAGCC--TCCGTTCAAATTG-ATCATCATCAAAACTTATGTGGCTTTTTGACCTTTGAATAGGGaattttttaaattttttaaaaattaaaataaaaaaaaCACATGGCTCACCCTTCCACCCACTCTGGGGTCAAATAGTAATTTATTGGGTGAATGACAGTGTTCAGGGACCCAAGCTCCCCTAACAGCCAGAA-GAGGGTATGTGTGGGCCTGGCAGGAAAGGGCAGTTGCCAAGGAGGAGTCAT---ATCTGATCCTTCCCATTTCTCAGGACAATCAGGCTCAGCCTCCTGGGACTGGGGGAAGCAGATGTGCTGAGCTCCCACATGGTGGTGGGA-GGGGCGCTGGG-ACCACAGCCGG-CAGCTGCCTTCTTGGACCTTTCCAGGTCAGACCTGGTGGAAGGGAAAGTTCAGAGTTGGGGGAATCC s canFam2.chr12 4089105 639 + 75515492 ACCACCTCCCAGCAGCACCTTGT-CCCTGGCCCCAGGCCCAG---CTCTCAGAGCAAGAGCTCCACTACGCATCTCTGC------TGCCCATGCCCTGCCGTGAGGGACCCGACCTCAGCCACAGGGA------AGGCTCCAAGGAGGACCCCGGCACTGAATATGCCTGCATCGCCAAAAACTAAGCCCCCCGAGCTCCCCCAGCCGCCTCCCTGAACCCAGGAGGA------------CCCTGTGGTCCATGCAGTAAACACCATGATCTCGCCACCTTCTGTGTTTCAGTCTTCTCAGTCCAATTCAACTCCATCCCACCAAACAGCACCACCGTCAAAACCTAAGCAACTT-----------------------------------------------------------------ATCTCCCCACCCATTCGGTGGTCCAGGAGTGATTCCTCGGGCAAAGAACGGTGTTGAGGGGCCCAAACTCTCCTGGAGGCCAGAAAGAGTACACATATGGGCCTGGATGGAGTGGG-GGTTGACACATAGGGCTCACCAGATCTGATGCC-CCCATTCCTCAGGA------GACTCAGTCTCC-ATGCCCCAAAGAGGTAGAAGTGTTGAGCCCTGGGATGGTGATGGGAAGGGGCTCCAGGTATGGCTGCTGGGAAGCTTGCTCCTTGGACCTTTCCAGGCCAGGCTTGGTG-AGGGGAGAGTAAAGAGTCGGGGGACCCT a score=58170 s hg19.chr6_ssto_hap7 2887790 1098 + 4928567 GGAGAGAGTAGATTTGGCATCTGGAGAATGGAGAAGAAAACACTTGAGACTCATGAGGAG---TTAGTGGTGGGGCAGA------TTTATTGGGGTCTTTTGAAGAGGACTAGGGACATCTGGGCTCTGGAATCACTCCTCGGGGCCCATCTGAGGAGTGGCAGTGTGTTCCCATGTGACAGTGGCCTGGTCAGAGAGAGGACAGGAGCTGCTCAGTGTTGCAGTCCCGAGGCTCTCCTCTTCCTGGTCTCTGTCCTCCCTCCTCCCACTCTCTTACTGCCCCTCCCATCCCGTCCACTATTGCCCCTGGCTCCATTACTCACATTTGCCCTGGTAATAGACGGTGCTGCCCACGGCCACAGAGAGAAAGCTGACAGCATAGAATCCAGCCCGAAGGAGGAGGACTGTACCAGCCCCTAGCTGAGGATGTTCTGCATGGGGC-----------AATGGAGACGGGGGT--TGGGGAAGAAGTGCACACAGGCTCAGGGAGGGAAGG--------GGCCTCAGAGGAGCATCCCTGCCTCCCAAGGACATTGCCTCTTGGGGCCTCCAGCCAGGAGGAGACACCACCTCCCAGCATCTCACCTTTCTCCACCACCAGCCGAGTCCCATTCCCTGTCCCGACACCAAGGCCCAGCACCTCCACTCTGCACACGTAGATGCTGGCGTCATGGCCTCGCACGTCCCGGATGTGCAGCTCAGCCTGGTGGTCATGGAGGAAACGGGAAGAAGCAAGTGGGGCCAGGCGGCCCCTGAACTCTGGGGTTCCATTCCTCACCTCCTTCCCTGGAACCACCTCATCTCGGAACCACGTGACGGAGCCAATGGCCAGTCTCCCTTGGCTGGCATTGAAGGAGCAGGGCAGGAAGGCAGAGGATCCTTCCAGGGTACGAATCTCAGGGGGCTGGGACACCCAGAGAGCACAGGATCCTGG-GGGCAGAAGGAAGACCCAGAGAAACACCTCCCCAGTTATTCCAAA----GAGAAAAGACAACAGAGCTTGGAGTAGAACATCCCAGC--TTTCTCCAGGCATAGGGTG--CATGGGAATAGATACTTTGGGGCCTCATTAAACCCTTCCCTCTTAACCAATCTGATTTCTTAACATTGCTTATTAAA s canFam2.chr12 4089944 1065 + 75515492 GGGAGGAGCATATTTGG-GTATCAAGAATGGAAAAAGAAGTACAGGAGACTCATAAGAAGGCATTAGTGGTGGGGCAGAGGAGGATTTATTGGGGTCTCTTGAAGAGGGTT--GGATGTCTGGGGTCTGGAATCACTCATCAGAGTCCACCTAAGAAATGGCAGCGTGTTCCCAGGTGACCGTGGCCTG-CAGGAGAGAGGACAGAAGTTGCTGGGCACCGCAGCCC-----------TCTTGCTGGTCTCCGTCC--CCACCCCCAGCTCTCTT-------------------CCACCATTGCCC-TGGCCCCATTCCTTACATTTGCCTTGGTAATAGATGGTGCTGCCCATGGCCACACAGATAAAGCTGAAGGCATAGAATCCAGCCCGAAGGAAGAGGACTGTGCTGGCCCCTAGCCAAGGAGATCCTGCATGGGGACCATAGAAGGAAGGGGAGGAGGGGGCCCTAAGGAAGAAGCACGCACAGGCCCAGGGAGGGACAGAGAGCTAGGGCCTCAGGGAAACACTCCCAACTTCCAGGAAGAGGG-------GGGCCTCC--------------------------CACCTCACCTTTCTCTACCACCAGCAGTGTCCCATTCCCTGTCCCAACACCTAGGCCCAGAACCTCCACTCTGCACACATAGACTCCAGCATCACAGTCTTGGATGTCCCAGATGTGTAGCTCAGCCTGATGGTCACAGAGGAAACGGGAAGAGGGAAGAGGGGCCAGGCGGCCCCTGAACTCGGGGGTCCCATTCCTCACTTCCTTCCCTGGGGCCACCTTGTCCCGGTACCACGTGACAGAGCCAATGGCCAATTTCCTTTCGCTGGCATTGAAGGAACACGGCAAGAAGGCAGCAGTGCCCTCCTGGGTATGAATCTCAGGGGGCTGGAACACCCAGAGAGCACGGGATCCTGGCAGGCAGAGAGAAGACCCAGAGAA--ACCTCCCCGGTTACAATATAGGGTGGGAAAGGACAATAGAGCTTGCAGTAGAACATCCCGACTGTGTCCCCACCCACGGAGTATCCAGAGGAACAAGCACTTTGGTACCTCATAAAACCCTTTTCTCTCTACCAGCCTAGTTTCTTAACACTGCTTATTAAA a score=9407 s hg19.chr6_ssto_hap7 2889198 212 + 4928567 TCATTTTTCAAATTC-TTCCTATACCAACTCTCACTCTCACCCTCTGCCATCATTCTCCAGCCA-GTTCAGTAGTAACTTGTCTAGCTGAAATGTAAACCATCATGGTGAAATT-AAGCTCATTAATGAATGCAGCTGCCTAGTTAACTAATATCACTCATTATATTA-TCCAGGTATTATTTTAGTACAAATGGCAT----TGTACAGTAAGCCATCCt s canFam2.chr12 4091009 215 + 75515492 TAGTTTCTCAAATCCTTTCCTATACCAACTCTCATCCTCACCCCATCCCATCATTCTCCAACTACATTCACTCGTAG--TATCTTGCTGAAACTCAACCTGTTACATTGAAATTGGAGCTCATTAATGAATGTGGCTGTCTAGTTAACTAATA--ATTAACTATATTACTCCAGGTATTCTTTTCATACCAATGGCATACTCTATA-AGTACACCACCCT a score=15334 s hg19.chr6_ssto_hap7 2889726 303 + 4928567 AGCCACTCTTGGTTTTCGTTAAAGAAAGT-AACTAATTAAATCTCCAGGTGAAGACGTGGCCTTAATTGGTTGAGATTCCTATTTAACCCGTCCATGTTGATGAATTAAACCAAATATTAAAATCCCTGATTAAATTATCTACTTAGGGAAATTTACAAGTCA---TTCTATTTcagtggttctcaaacttgagtgtgtatggaaattacctggagcatctgctagaacagattcctggg-cctaccccccgagtttttgactcagtaggtctggagt--ggggcctaagaatttgttctaggttcccag s canFam2.chr12 4091224 306 + 75515492 GGCTACTTTGCTTTTTTGTTAAAGAACATAAACTAATAAAGTCTTCGGGTGAAGACACAGCTATAATTGATTGAAATCCCTGTTTAACTCATCCA----AATTAATTAAGGCAATTAGTAAAATCTCCGATTAGATTCTCTAGTTCATGAATTTTACCTGTCATTCTTCTGTTTcagaggttcttaaacttgagggcctattggaatcacctggagggtctgttaacacaggttcctgggccctacccccagagttttttactcagtagatttagggtggggggcctgagaaattgccctaggttcccag a score=2920 s hg19.chr6_ssto_hap7 2890045 61 + 4928567 aactcctgCATTTAGTTAAT-AATATGCCTGATAGTTAAGGTCTCTCAGTTCATTAAAAACA s canFam2.chr12 4091976 62 + 75515492 GATGTCCACACTAAGTTCATGGATATGGCTGATAGTTAATGTCTCTCAGTTAATTAAAATCA a score=2012 s hg19.chr6_ssto_hap7 2891007 58 + 4928567 GTTTCACCAAGAAATTTATCATAGATTTACTTGGATCTCTCAAAC------------------------TAAAAAGCCTCAC s canFam2.chr12 4092038 82 + 75515492 GTTTCACTAAAAAACTTCCCTTAGAGTTAATTAGGTCTTCCAAACTCCTAATTACATCTAGACTCTAGATAATAAGCCTTGC a score=31962 s hg19.chr6_ssto_hap7 2891065 844 + 4928567 AGTGGGTG---------------------------------------------------ACACAGAGA---------GACTGTGAATTGGGGGAGTCCACTGAGTGTCACCTTT--GGAG--------CAGTCCCACTCCTCCCTCAGAGCCGTGTGTTTCAGCCCCCACCAAGCCCGTTCCCTATAGCATCTAGTCCAGCCTCCTGGAT-CTCCCTCCTCCCA--CCCACACTC-CTTGGGGTCCTGAGCGCACGCCCTGTCACCTGGATGGACCATGATCAAGATGAGCAACAGCATCCAGGCCATGTCGGAAGATGTCCCAGTTGGCGAAGGGGATCTGAGCAGTGAGGTCTGGGTGGAGGAGGAAGGACTCACTACTTGTAGCCAGGCCTTTGGTCACCAGATGGGGATGGGGAGCTTCCTATGACACACGGGACTCACACATCACTTGCCAAGGACCACAACTGCCAGGGACCTCGAGCATCAAATGCTTGCCTCCCTGAGGAGAGAGGACAGATGCTGCTGGAGGAGATGTCAGGGTCTCTAGGAGGCCAAGGGGCCAGCTTGTGGCAGGCTAGCTAAGCGTGTGAGGGGGAGGGTGGGGCTTAGATGGCTGCTAACCCAAGGGTGAGTGGGCGGTTGGGCGGGTGAGACCAGGATGTGGGTTCCCCCACCTTCCGAGGTTCAAGGAGACCAGCTTTTACCCAGAACAAGCCTCCAGGAGCCCTCCTTGGCCCAGAAGCTAACCTACTTAC-CCTCCCTGCTGCTCACCAGTACCCAGACCCATCCCACCCATTCCCTTCCTGGAATCTGGCCTCACTGCACCCCAGGGCTACTCCAAGATTTCTATGA-----GGGATTAGGAGAAGCAAGCTGATTGGTGAAGCT-----------------------------ATATTTAATTTGCATAGCAATCACCTtgtgt s canFam2.chr12 4092230 890 + 75515492 GGTGGCTGGGAAGAAAGGATGTTTGGGATGGAAACTGGGGTGTGACTCTCCCAGTAGCAACATGGAGAAATGGAGGGAATTGTGAACTGGGGGTGTCCACACTGCTTCGACTTCCAGAAGACCCCACCCACTCCCATTCTCCTTTCCCAGCCACCCACCTCAGGCCTCA------------------------ATGTCAGCCTCTTCCATCCTCCCTTTTCCCAGGCCCACACACTCCCAGGGTTCTGGAAGAAAGCTCTCTCACCTGGATGGACCACAATGAAGATGAGCAACAGCATCCAGGTCATGTCAGAGGGTATTCCAATTGGCAAAGGGGACCTGAGAAGTAAGGTCTGGGTGGAGAAAGAGCAACCTACTGCTTGTGGCCAAGCCTTTGGTCACCAGATGGAGGTTAGGAGCTTCCTATGATACACAGGACTCACATATCTCTTATCAAGGACTTCGACTGCCTGGGACCTCAGGCATCAAATGCATGCCTCACTGAGGAGAGAG----GATGCTGCTGAAGACAGTATCTGGGTCACTAAGAGGCGGAAGTAACACATGGTCAAGGGC---CTAAGTGTTTGAGGGAAAGG--GGGGCTTAGATCGCTGTTCACAGTAGGG------------TGGGTCTGTGAGACCAGGATGT-GGTTCCCCTACCTCCTGAGGTTCAAGAAGA-----------CCATAATAAGCTTCCAGAAACCCTCCTGTGCTCAG-AGCTAACATACTTCCACCTCGCCTCAGTTCAGTGGTGCCCAGG-CCACCCCATCTGTTCCCTTCCC----TTTAGTCTGGGCCGTCCCCAGAGCTGCTCTAGAAATTCTATAATTGAGGGGATTAGGAGAAGCAAGCTGATTGGTGATGGTGGCAGGCGGTTGCTAGGGTCTTTGCTTGGAAGCTTCATTTGCATAGCAATCAACCTGTTT a score=1425 s hg19.chr6_ssto_hap7 2895615 20 + 4928567 CTCTACAGGGATTGGTACAA s canFam2.chr12 4093399 20 + 75515492 TTATACAAGGATTGGTACAA a score=4886 s hg19.chr6_ssto_hap7 2895635 105 + 4928567 GAGTATGCCAGACACTCTTGTATGTGTATCACACAGCTACAGGAGATAATACAGCACATAGAAGTGAAGGATGACATGTAATATGC---------CATGTGTCCACCCCTTACC s canFam2.chr12 4093631 114 + 75515492 GAATACACCACACATTGTTGTATATGTATTACACACCTATATGAGATAGCACAGCACCTAGAAGAGGAGGATTATATGCACAATACTAGATGAGGTATGGGCCCAGCCTTTACC a score=1597 s hg19.chr6_ssto_hap7 2896312 23 + 4928567 TGGCTCATTTTATATGAATACAt s canFam2.chr12 4093758 23 + 75515492 TGGCTCTTTTTATATTAATGCAT a score=6975 s hg19.chr6_ssto_hap7 2896658 123 + 4928567 TTTGTATCTGTGTTTCTAGCTCTGTGTCACAGTACTTTTGTAGACTGTCCAGTTCCCACCCATCACTGAAGTAATTCAGAGCTTTCTTTTGGAGAAGCAGTCATCTCATGGTTAAGAATGCTG s canFam2.chr12 4094578 120 + 75515492 TTTGTGTCCCTGTTTCTAGCTCTGTTTCACAATACATCGGTAAAC--TCCAATTCCTATTCTTCACTGTAGTGATT-GGAGTTTTCTTTTGGAGAAGCAGCAGTGTCATGGTTAAGAATGCTG a score=2389 s hg19.chr6_ssto_hap7 2896781 43 + 4928567 GTTTGGAATGAGTCTAGGTTCAAATGTCAGCTCCCCCGCAATC s canFam2.chr12 4094876 43 + 75515492 gcttggaatcaacctgggttcaaataccagcttctctacaaac a score=16403 s hg19.chr6_ssto_hap7 2897156 423 + 4928567 TAATCTTGAACAAATTATTTTACCTCCCTAAGCTACCGGAACAACCACACATGCCACACAACCTGGGAAGGACCAACTCAGCCATTCTCCAGCAGCGAAGTGGCTGCCACCCC----AGGGATATCTAACTAGAGGATGTGGGATGGAGGCGTCATGGCAAGGCAAGGCCTGCCCCCTGGTGGTCAGAGAGCATGGGAGG--------------CCCGAGCTACC-AATGGTGGCTTTTCTCAACTGGGCCTTGATTCCAGCTTC----TGCCCGATCCCCTACCTTG-CTTGCCTCC-----TTCTATCAACACCCCATTCACA-CCCCAAAGGATCAATATAGGAAAAATTGTCTCTACTATCTCAGC----TGTAAGAAGCCCACGGTTTGGGGAGGGAGAAGAGGTCACCACCAG-----TGGGGACG------TGGAATAAGTAACTGG-CTGGGGATAAAACT s canFam2.chr12 4094963 467 + 75515492 tgatcttgaataaattatttaacctctTCAAACCACCTGCTCAAGCACACATGCCTCATCATCTGGGGAGGACTGTCTCAGCCATTCTCCATCTGTAGAGTAGA-GCCATTCCTCTTCTGGGCCTCTAACCCGAGGGTGGGAAATGGACCTGCCATGGTCAGGCAAGGGCTGCCCCCTGGTGGTCATGGAGCAGGGGGAGGTGGTTTTTCTCACTCTGAGACGCAGAAAGGTGGTTTTTCTCGGATGGATCTTAACTCCAGCTTCCTTGCGCCCAGTACGTTACCTTGCCTTGCCCCCTCTCGTCCTATCAACAGCCCATCTCCACCCCCAAAGAGTCAATGTAGAGGCCATTGTCTCTTCTA-CTCACCTATGTATGAGAAGCCTGCAGTTTGAGGAGGGAGTGGAGATCGTCACCAGTAGAATGGGGGTGTGGGGCTGGGATGGGCACCTGGCCTAAAGATATAACT a score=11918 s hg19.chr6_ssto_hap7 2897890 329 + 4928567 TCCACTCTTCCACAGTGTACACTCAATCACATGGTTCTACTCCACGTCCCAAGGCAATGTGGCTTAGAAGACAAATCAGCCTAGGTTGGAGTCCTGGTGCCACTA-------CTGTAAACTGGGGGTACCA-CCTGTAAACTTCCAGACCCCATTGCCCTAGGTGTTCAATGTGTGGTTCTTCTCCAGTGCTTCCCCCGTCCTGTGCAAGGGTGG-CAGTGCCATTGCTACACCTGGACTCAAGGGCATCCTGCTCTC-CCAGCTCTTTTCTATATCTAAGACTTCTAAACATTTGTCATAGCTAAAAATGTTCCAGATTCCAAAGACAGTATGTGGGT s canFam2.chr12 4095430 319 + 75515492 TCCATACTCTCACAGTACACA------CACATGGCACTGCTCCATGTCCTAGGGCAATGTGGCTTAGAAGTAAAGTCAGCCGAAGTTGGAGTCCTGGTTGCACTACTCACACCTGTGCGATGAGAGTAATATCTTGTCAATGTCCAGACTCCACTGTATGGGATGCTCTGTGTATGTTAGCTC-CCAGTTCCTCCTCAGTTTGGGGCTAGGATGACCATTGTTACAGCTGTGTCTGAACTCAAGTGTATCCTGCTCTCTCCACCTCTTGTCTCTACCTAAGATTTCCA---ATTT-------CCAAAAATGT---GGATTCCAAAGATTGTACTTGGGt a score=3210 s hg19.chr6_ssto_hap7 2898220 49 + 4928567 TTTTTTTTCAGTCCATCTAGAATAAATCCTGATATG-TGTGTACATTCAA s canFam2.chr12 4095938 50 + 75515492 TTTTTTTTAAGTCCATCTAGAATAAATCCTAGTATACTGTGTAGATTCAG a score=4335 s hg19.chr6_ssto_hap7 2898269 75 + 4928567 GGGACCCCTTTTAATAACTCTGAGAACCTCTAGGGAAGGCTAACCTGCAAGACAGGAACTGCTGCGCTAATCAGC s canFam2.chr12 4096172 74 + 75515492 GGGGTCCTTTTCAATAGCTCTGAG-ATCTCTAGGGAACTTTAACCTGCAGGATGGTAACTGTTGCACTAATTAGC a score=4633 s hg19.chr6_ssto_hap7 2898672 93 + 4928567 CCAAGGATGGAACTTTTCTAAAGAAATTATTCCCAGGCACTCAAGAGGAAAGGCAACAAATAAAACAGTGTTGAAGTGGATGTGCACTGGTCT s canFam2.chr12 4096246 90 + 75515492 CCAAGGAGGGACTTTTTTCAAAGAAACTTTTACTGGGGACTCAAGAAGAAAGGCAACCAATAA---AGTTGTGAAGTGGATGCACACACATCT a score=9500 s hg19.chr6_ssto_hap7 2899085 370 + 4928567 TCTGGTCTGACTTCTTTAACAACAAGCTGTGGGCTGGC-TGGATGTAGTTGAGGCCAATA-----AACTCCCAACTCAGACCATGAAAACAGGTGAAAACACAAAAG----TCCACAAT-CCAGCACAGGTGATCTCATCTTTCCCCCACCCCCACCAGGGTTCCTCTACGTGCTGGCAGGGGTGAGAT-TGGGTGACTTCTC---TGGCCAAGT-CTTATCAATATTTTTCAACTAATGAATGGCTCCCAGGTGATGATACTTTCAGCTTCTGAGAACAGCTTCTCCTCTGAGGCTCATAGCATCTGACCTCACGACCTTCAATCTCTCCTTGGTGTC---GTCCACTCGCCCTCACATTCATCAAGAGCCCATCCCTGACTCTGCAG s canFam2.chr12 4096470 345 + 75515492 TCTGGTCTAACTTTTTAAACATCTCCCTATGAGCTGCCTTGTGGGTGGTCAGGACCAATAAACACAACTCAGAGTTCAGAGCAGGAACAGAAATGAAGACACAGAAGGAACTCTGGAATCCCAGTACA-GTGATCT---------------------------------TGTGTTAGTAGTGCTGAGATGTGGGTGCCTTCTCCTTTAGCCAAGTCCTTATAAACA-TTTTCAAAGAATTAGCAGCTCCCATG---TTCTACTTTTAACCTCTAACCACAGCTT---CTCTGAGGCTCCT-GCATCAGACCTCACCACCTTCAG--TCTCCTTGCTGACACAGACTAATCTCCTTCCCATTCATCAAGAGCAGGCACCTAACTTCCCAG a score=2967 s hg19.chr6_ssto_hap7 2899786 57 + 4928567 CTTCCTCTCTATTTCAACCTCTGCCAACTCCTTAATGGACTTAATGTCCATATGAAT s canFam2.chr12 4096815 55 + 75515492 CTTCCTATCTATTTCAACCTCTGCCATCTTTCTGGGAGAC--AATATCCATGTAAAT a score=7474 s hg19.chr6_ssto_hap7 2900159 215 + 4928567 TTTTAAACAttgatatataatttcatacagtaaaatgcacagatctt--aatgtacagtttgat------gacctttggc--------caatatgta--cacccatgc-aaccacactgtaatagagatatagataattctcattatcctggaaaattcctccatgc-ccctttttggtaaatccctttcccctcctagatgcaaccattttaccatttttaacctctgtagact s canFam2.chr12 4096874 230 + 75515492 ttttaaacactgagatataaatatatgcagtaaaattcacagatctttaaaaaaaaaatttaagcgcccagaccttaagcgtctagttcaatgtctatgcactcctgtaaacaacattgcaagtgagaaacagatcacttccatcaccccagaaaattctcccatgcttcttttttggtcaatccctctcttctcccagaagcaatc-----actgatttgtacccctatagatt a score=9794 s hg19.chr6_ssto_hap7 2901000 219 + 4928567 tctgttcttgaacatcatattaatggagtcatatagtacatactcttgtatctggctcctttcattctgcttaatgtctgtgagattcgcccacgctgttgtatgtatcagtg-----------------------------tttcattccttttttttgctgagtggtaatcctttatat-gatgtagcacagcttgttgatctattcacctgatgaagtacaattgggttgtttctattttttgttt s canFam2.chr12 4097131 242 + 75515492 tctattcttgaacttcatgtaagtgtaatcatatagtatatactcctgtatctgacttctttcattttgtataatgtctgtgagattcatcta---tttcgcatgtatcagtagtttgctcttttttttatcttttctgttttttttttttttttttttgctgagtggtattctataatatgggtgtactacagttt----atccactcacctgatgatgtacaaatgggtggtatgaacattcccttt a score=2053 s hg19.chr6_ssto_hap7 2901241 43 + 4928567 tatgaaacttcttgtacCCATCTCGCAAATGCCTTTTCAATAC s canFam2.chr12 4097554 43 + 75515492 tatgaacattcttgtacatgtcttGCAAATGATTTTTCTTTTC a score=10369 s hg19.chr6_ssto_hap7 2901284 215 + 4928567 CCTAAGTGTGC-AACTTCACAGTTATTTCACCTTGTCCACTCCAATCATCACCTTGACTCTCCATGACCTACATCTCAGATCCTGTCACCATGGAAGCTGTTTCACTTTGAAATCTCACCTCCTCTTTCCCAAGGACATAAAAGCCATCCAACCTGAGTCCC-CCAGACTCCTGTACCCTAAACGTGTGCTTTTATACCACTGTCCTGTTGGAAAAT s canFam2.chr12 4097944 214 + 75515492 TTTCAATATACTAATGTCCCAGTTGCTT-ACCTTGTCTACTCCAGCCATCACCTTGATTCTACATG-CCTGCACCTTAGATCATGTGACCATGGAATTTGTTTCACTTTGGAATCTTCCCT-CTCTTTCCTAGGAACATAAAAGCAATTAGGCCTGAGTCCCTCCAGACTCCTATACCCTGTATATGTGCTTTCACACAATTCCACTGTTGATGGAt a score=20616 s hg19.chr6_ssto_hap7 2901987 364 + 4928567 TTCCCACTTTCATTCAATAAATTTTGCGCatctaccatggctttcctaggcaatcctgtcatagccacagttgtcactactgcttattctctgtcaagtccccaatctacatctc------------------cccctcaggcctctttcttgagacctaagtccacactatctaactgctctctaggcggcttaccctgaatactccacaggcatttcaaagtcatcagtgtccactcagaccaggtcagcctcctgtcatccct-gtcccagtgaatggaaacacaaagc--cccagtcacttaaggcaaacacctgggattcatcctactctgccttctccctcagttcccccatccaaaagatctccaggccctgtccatt s canFam2.chr12 4098365 380 + 75515492 CTCCCACTTTCATTCAACAAATATTGAGCATCTACCA-GGCTTACCTAGGCAATCCTGTCATAG--acagttttaaccaccacttattctctgtccagtctccaatctatatctccatcacagtctataccttcccctgaggcctctttcttgag--ccaagtccagaatacctagctgttctctagacatctcctccaaagtgttctacaggtgtttcaaaattatcagtgtccacccaaactgggtcagcctcctggtattcctcatctcagtgaatggaaatacaatccatctaaatcacttaaggcaaaaacctgggatttctatttttctgccttctccctcaattgccccatccaaatagtctccaagtcctgtcgatt a score=11097 s hg19.chr6_ssto_hap7 2902352 300 + 4928567 tgcttctgaaagatcgcaggtgtctttcccttgctcttcattc-cactgGTTGCTAAATCCCTCATCAACTCAAGGGGAAACGAGCAGAGTTGCTTCTCTGATGGGTAGTGTGGTTTCTGCACAGCATCCCCTTCATCCCACCACTGCTGGGCATTGAGGTTCATTCATCTATTCAGCATTGCTCTTCACGAGGGCCTTCCATGGGCCAGACACCCTATCTTCATCTCTCTTAATCGCTCTTTTCAGTATCTCTCTCCTTATCTCTCATATTTCCCACAGCTCTGTCCACAACTCTTTCTG s canFam2.chr12 4098939 296 + 75515492 tgcctctgaaatatctcaagcatcttcccac--ctcttaattctcatagctagttaaggcccttgtcatctcaggatgaaattagtacaattgcttctctgacggatAGTGTGGTTTCTTCTCAATATCCATTCCATACCTTCTGTTCCAAGTGTTGAGGCTCATCTATCTATTCAGCAATGCTTTTATTGAGTTCTTTCCACATGCTAGGCTTTCCATCTACCTCTTCTTTTATGTTTTTCTTC---ACCTTTCCCCTTCTTGGTCCTATCTCCCACATCTCTGCACATGACTCTTCTCA a score=5222 s hg19.chr6_ssto_hap7 2902652 160 + 4928567 TCTCACCATGTTATTCATATTACTTGTTTCTTCCCC-CGTGTCCACTCAAACGCCACATCTCTACACACCCCTACCCCTCTGCCTCTCTGTCACATGCATACACACTTCTGCTTattcac--------tcattcaacaaatattcagcgagcaccttcca--cgtgagaca s canFam2.chr12 4099467 159 + 75515492 TCTCACATCTTTATTCATATCACTTGTTTTTTCCTTATGTCTCTATCCACAACCCACGTCTCT------CTCCACATCTTTA---CTCTGTCCC---CCCAGGTACATCTGCTTATTCACTAattctttcattcaacaaatatttggtgaacaccttctatttgtgaggca a score=10566 s hg19.chr6_ssto_hap7 2903083 299 + 4928567 tccgtctttctctctctctgtcttcctccatctctcttcgcatcgctttctgcctccccatcattctccatgttttcccttcccatctctccccatctacataccttattcttttactccatttctcttccttccccatttctctctGGGTGAGAGAATGAAGGAAGGCTAGTGAC-TAGTCACCTCTTCCCTCTAGGGGCCAGAGTTCAGGCCTGCCTCAGCTCTGCCAGGCTGGTTGGCACTACTCTTGTTTGCCCTTGGAGTCTCTGCACAAGGATGCTT--------AAAAAAAAAAAGTTTAg s canFam2.chr12 4099626 295 + 75515492 cctatctctccaaccctctctcttacctcatttctctctacatctttttccacctccccatctttccctacattttcccagcacctctctttccctcagcccatct-----------ctcatttctctttctcccccatttctttctGGGTGGGAGAATGAGTCAGGGCTGGCAAAGCACTTGCATTTTTCCTCTGGGAGCCAAGG--AAAGCCTTCCCAGACTCTATCAGGCTGGCTGGGACCACTCCCAGATGCCCTCAGATTCTCTGTGCCAGGTTCTTTATTCaaaaaaaaaaaaaaaaaaaaa a score=805 s hg19.chr6_ssto_hap7 2903666 47 + 4928567 TTTGTGCAGCAGCGACAGAAAAG-----------------TAACCTACAATATTAGAGGAAGAC s canFam2.chr12 4099921 64 + 75515492 aacaagaaaaagaaaaagaaaagaaaagaaaaaagaaaaTTAACCTACGCTATTAAAAGAAAAC a score=2606 s hg19.chr6_ssto_hap7 2903713 53 + 4928567 TCACATCTCTCAGAAACT-ATATATTAAGCAGGCAAAAAAATTATTAAAGACAA s canFam2.chr12 4100184 53 + 75515492 tcacatccatcagaaactggtaaatcaaacaggt-aaataattactaaagacaa a score=2857 s hg19.chr6_ssto_hap7 2906268 93 + 4928567 TCTTGCATGTCTATTCT-------TTTCCCCTCATCTCTGTTTCCTTCTCAGAAGGCCCTGAGTTTCCTTCTCCACCCGCTTGTCTTCCTATATACCCTT s canFam2.chr12 4104820 88 + 75515492 TCTTGCCTGTTACTTTTCATAGGCTTTCTCCACATTTGTGTTT------------ATGCTGGGTTTTGTTCTCCACCCTTTTGCCCTCCTAGATACTCTT a score=15309 s hg19.chr6_ssto_hap7 2906666 316 + 4928567 AGTCTTCATTTTTGTCCCACAGTCAGAGCAGCTGTCATTCTCTCTATCCCAGGCAGTTTTTCTGAGCATCTAAGCACTGTCTCACCCCAGTAGTCTGTCAAGCCATTCTCAATGGAAAGACCAGTCTGGGAGGCAGtctcactcagaataaaagccagagtctttacaag----------gccctacccaagctgacctc---------------ctcct----cacctggcttcagcagcacaggcctccctgctactccatgaacactccagatatccacac-tgctctcacatcagggcctttgaacttgctgttccctccacctgaaatgttcttctcccAT s canFam2.chr12 4104908 341 + 75515492 ACTTTTCACGTTTGCCCTGT-GTAAGAGCAGCTATTG----CTTTATCTCAGGAAGTTTCTCTGAGCCTCTAAGCTCTATCCCACTATGGTAGTCTGCCAAACCATCCTTGATAGAAAGAAGAGTCCGGGAGGCAGtctcacctcgaatacaggccagagccttcccaaaggcctatcatgccctatacaatctggcctcatatcctgcctgtttcccctcacacacctggctctagctacactggccatcctgctacttcacaaatactccagatagccagacatgttctcacctcaggacctttgcacttgctgtgcccactgcctgaaatgctcctctctcat a score=28301 s hg19.chr6_ssto_hap7 2909473 524 + 4928567 TTTTTTCGTTTTGCAAATCACAGTTCCCTTATTAAGATGGAATTGCTGCCAATTACAGAGAAGCTATTTGCCTAAGCCAAAAATCCATGAGGTTCACATGGACTTATAGTTACACAAATTAGAAACAAATGTTATATTTAAAACCATAGAGAA-----ATGCCCAGGTGATGAAAGCTGGGGTGAAGGAGTCTGCACATTCATTTCAAACTGTTAAAGGATTTGTGGGCCATGCAATGGTCCCTTGCATTAGAGAAGTCAAAGAGCTT---TGTGCAATCCTCTCCTGTCTGTGATCTGGAAGACACGTGCTCATCACAGAGCTCCAGCTGCTCC-GAGACTTTACTCCTTTCTTCAGCTGCACGCACTGCTCTCTCGCTTTTGTTAGGA-ATTGACTAATtcctcctcttcctcttcctcctcctcctTGCCATCTCTAGGCCCAGTCAGCATCTCTTGTTCATCCTCTGATCCCATGTCCAGCTATGGTTCTGGATTCAACACTAGCAGCAACAGTGGCGCTGACTCCACTT s canFam2.chr9 49694695 517 + 64418924 tttttttttttttcAGACCACTGG-ACTTTATTAAGA-GGAATCACTGCTAATTACTTAGAAGCTATT-GCCTAAGCCAAAA-TCCATGAGGTCCACATGAACGTACAGTTA----AATACGAAACAAATGGCATGGTCAAAACCATGAAATATCCTGATGCCCGGGTGATGAAGGCTGGGGTGAAGTA---TGCACATTTATTTCAAACTGT------GTTTGTGGGCCACACAGTGGTCCTTTGCATGCAGGAAGTCAAAGAGCTCCTCTGTGCAATCCTCCTCTGTCTGTGACCTGGAGGATACAGGCTAGTCACAGAGCTCTAGCCGCTCCCGAGCCTTTACACATTTCTCCAACTGCTGGTATTGCTCTCTCACTGTTGTTGGGGGATCCACTAATtcctcctcctcctcctcttcctcctcctTGGGATCTCCGGACCAGGTCAGCATCTTTTGCTCGTCCTCCAGCCCCATGTCCCGCTACGGTTCTGAATTCAACACCAGCAGCAACAGCAGCACCTATTCCACTT a score=12807 s hg19.chr6_ssto_hap7 2910341 250 + 4928567 CCTTACATGGTCCCTCAACTCCCCAAGCCC--ACTCTGCCTGCCCCATCTCCTCCTTCCACATCCTCTCCTCAACCTAGCACTTGGTTGGCAATGCCTTCCTCGATCCTCTGCCA-----------AAGACCCTCTAGCCAGTGCTTACCCTGTCTGTTCTCTCTCTTTACCCAAAGAAATACATAAAGTTTGACCAGAATGGAAACAGAGATATCAGTGA-AAAAAGGTGATTTGGGGAAGTGTGCAGGCCTAGGAAGACAGA s canFam2.chr12 4108265 262 + 75515492 CTTAATAGGGCCCCTCAAGCCATCCAGCACTTACCCTGCCTGCCCTATCTCCCCCTTCCATGTCTTCCCCT--ACCTAGTGCTAGGTCAGCAGCCCCTTTCTCAAGTCCCTGCCCTGCTCCTGCCTGAGACCCTCCAGCCAGCACTTACCCTATCTGCTTTCTCCCCTCACCCAGAGAAGTACATGGAGTTTGACCTAAATGGAGACGGAGATATCGGTGAGAAAAGGGTGTTCCAGGGAAGTGTGCGGACCCAGGAAGAGGGA a score=1121 s hg19.chr6_ssto_hap7 2910591 29 + 4928567 GGCTTGTTCCTTTGCTTGCTTAAAATCTT s canFam2.chr12 4105259 29 + 75515492 ggcttatttccatacttccctgaaatagt a score=1727 s hg19.chr6_ssto_hap7 2910930 39 + 4928567 tctttgctcaaatatcactttttcagagaacgcttctct s canFam2.chr12 4105403 35 + 75515492 tttttgctcaaatat---tttcttagagaa-gtctctct a score=1340 s hg19.chr6_ssto_hap7 2911155 28 + 4928567 gaccaccatatttaaaactggggacaag s canFam2.chr12 4105438 28 + 75515492 gatcaccctctttaaaactgcagtccag a score=3099 s hg19.chr6_ssto_hap7 2911798 50 + 4928567 ctatgtcccctcttccctactttgttttcctccataggcacctggcgcct s canFam2.chr12 4105864 50 + 75515492 ttctatcctcccttccctactttgtttttctgtataggtacctgccacct a score=11042 s hg19.chr6_ssto_hap7 2912168 261 + 4928567 tatacttatttatttgtattgtctgccttccccaattagatcaaccatgaagacaagagttttcatttgttgggttctctgggcctagaggcatgtctggcatatagtaagcattcagtaaatatctgttgagtgaacg----tatGAATAAAGAAGTGAGTTCCTCCCAGCAGGCACTGAGAACATTGGGAGTACAGGGTTGCAGCTCTCTCTGCAGCAGGAGAATGTAGCTGCAATAAAGGGAAGTCAAGAAGCCAGAGTCCA s canFam2.chr12 4106038 247 + 75515492 taaatatgtttatgtttatagtctgtcttctgcagttagattgtccatgaggatgagaattgacatttgtttggatcactgaag-------------tggcatatagtacgcatctgataaatatttgttgaatgaatgaatGTATGAGTAAGGAAATGAATTCTCCTCACCAGGCATTGAGACT----TGAGTGCAGGGTTGCAGCTTTCTCTGAAA-GGGACAAAGCAGTTACAGTAAAGAGAAGTCCAGAAGTCAGAGTTTA a score=10093 s hg19.chr6_ssto_hap7 2912746 158 + 4928567 CTCCAGCATCTCCCCTACCTGGCTTGGGTCAGGGAGAGGGCAGTGAGAAGTGAAAACTCCCAGCTACAGAAAAGGAAATATGTTGCGGGGAAGGGAGAA-GGAAAGGTGTCTTCATCAATGCCGGGGCAGGGTAGATGGAGCCCTGGGCAGGGAGTTTG s canFam2.chr12 4106285 159 + 75515492 CCCCAGCATCTTCCCCCACCTGCATGGGTCAGGGAGAGGGCAGTGAGAAGTGAACACTCCCAGTTGCAGAAGGGGAAGTAAGGTGGGGGGGAGAGGGAAAGGAAAAGTGTTTCCATCTATGCTGGGGGAGGGTAGGTGGAGCTCTGGGTGGGGAGTTTG a score=137384 s hg19.chr6_ssto_hap7 2912904 2940 + 4928567 GACCAGGAAATCTCAA-----TGAGGGAAATGTGCTGTCCTCACCTCTCCAAGAAGCGACTGGCCAAACAGAGTGACAGAGGGGATAAAGGTTATGCCTAGGGAGG-CATGTGTCAGAGGCTA-TCATCCACTCTGTTGAACCCACAGTGACCAGCACCACCATCACACAAACATGCCTGCA----------------------TGTGTGCACGCACGCGCAGTGTGCAAACCTGATGTCAGCCTCACTCCCTGGCTCTTCTGTCCACAAACGCTGTTTCTTTAAGTACCACTTTCAGTTCCTCCAAAGAATCTACTTAAACTCTTAAATTCCTGATCTCTATagattttactaaagatttcaaaggagataagatgagagggttacgttgcacattctaaagcaaacaaattaaaatgttttgttagacatttccatatttttaagggcctccttggAGCTGCCAGGCTGGGAGTGAGGTTTCTCTCCCTTTCTAAACCCTGTGCCCATCTTGTCACCCTCCTGGAGCTGCCAGCAGACTTCAGATTCTTCTCCGATCT-ACAGAGCAGAAAAATTC-AGCCAGCCCTTCCTTGTCTTCCTATCCACAGCTGCCTGCCCAGACTCATGAAACCTGACAAAATGCAAGGTCTTATCATTACCTGAACCTTGGACCTGTTCAAAAAT-----ACTAGTTCCTGAGAATAAATATCCCTGGTGTCTTCCTGCCCTTCCTGCACACCTCCAGTGGCTTATCAAAATATTTGTTTCATGCGCACACTGGGCTCTCATTTAAGAGGAATTTGGGAGAATGTTATTTTCTAATCTGCATTTCACACCAGGCTCCCCCTCCT----------TCCTGGGGTGCTAGTGTCAGCAGAACCTGATGGGGAAGTGAGGTCTGGGAGGCAGAGGAGGAAGGAATGAGGGGAAAGGGGAAGTTTGGGAGGAAGGCTTCTGAGAAGACTGGTGGGAGAGAAGGAGAGCCTGCAGACAGAGGCCTCCAGCTTGGTCT----------GTCTCCCCACCTCT--ACCAGCATCTGCTGAGCTATGAGCCAAACCAGGGATTTACAGGGTAGGGAGG-GTGGGATAGGCAGCGGCATTAGATCGGAGGAATGAGATGGACAGACCTGGGCTGTGGGC-TAGGAGGGCAGTCAGCTGGCCTAGGG---------------TAGCCCGGGCTGGTGTCAGGGTAAGGAGAGGAA---------GGGAGGGATGAGGGCTGATTAATTTTTTTCACCCCACAGGAGGAAAAGCTTTCGGACTGCTGAAGGCCCAGCAGGAAGAGAGGCTGGATGAGATCAACAAGGTAGAAGGAAGAACTAAGGGGGC-AGAGCCAGGGGGATGGGGCGTGGATGGGGAGGGCCTACCCTGGCTCTTATTTTCCCCTCCATAGCAATTCCTAGACGATCCCAAATATAGCAGTGATGAGGATCTGCCCTCCAAACTGGAAGGCTTCAAAGGTGAGGGGGAAACTGTAGGCGGTG-GAGACAGGGCTGGGGGTAGGAGGGTTAGGATTTCCACAAGAACAAGGCAGGAACAGCAGAGATAAAAAGTTTACTTTTGTGGTAGCAAAAGGGGAACCTGCCTTTATTGCCCTCCTGCCACACTGCGGTCCCTTTCCCGGGCCTGCCTCTCTCAGCATCCCCTCTAGCTCCTTACACCCTAGCGGGGCCCCTCAACTCCCCAACCCCACTTCCTCTGCCTGCCCCTCCTCCTCCTTCCACGTTGTCTCCTCCACCTAGCAGTTGGTTGGCAACCCCTTCCTCA-GTCCC----------CTGCTGAAAACCCTCCAGTCAGCGCTTATCCCTTCTGCTCTCTCCCCTCACCCAGAGAAATACATGGAGTTTGACCTTAATGGAAATGGCGATATTGGTGAGAAACGGGTGATTTGCGGGGGCAGGGTGGTGTGCAGGCCTAAGAAGACAGAGGTCTCTCCTACA-TGCTCCATTCCTCATGATTTGGGAGGGGGCCCACCTACCACAGTGGGAGGAAGGAGAATGGGGATGCGGAAGT-----------GGGAGAG-GAGAGAGAGGGTCTCCCCACCTTCTCCCCATCCCCATCCTCTGCCCCCAGATATCATGTCCCTGAAACGAATGCTGGAGAAACTTGGAGTCCCCAAGACTCACCTAGAGCTAAAGAAATTAATTGGAGAGGTGTCCAGTGGCTCCGGGGAGACGTTCAGCTACCCTGACTTTCTCAGGATGATGCTGGGCAAGAGATCTGCCATCCTAAAAATGTGAGTGTCAATTTCCAACCTCCCCTGTACTTACCTGTTTTCTCCTCCCCCATCCCTACCCTTGTCCACAGGCTCAACATTTCTACACGTTGCCCATCATCC-CTTCTTCCATCCTTAGAGGGACCCTTCCAAGGTCCCGACCCCATCCCTATCCATAGTCCTGGTCCCCAGAAACTCCAACCCCTGCCCT------TCCTCTTCCCCCTTCCACCCTCAC----ATCCCCATCCCCTTCTAGCCTTTCCTAGCACCCTATGATTTATTCCCTTGAGAGGAGTGTTCCCTGATCCCTGTGCCTCTTCCCATCTCAACCAGGATCCTGATGTATGAGGAAAAAGCGAGAGAAAAGGAAAAGCCAACAGGCCCCCCAGCCAAGAAAGCTATCTCTGAGTTGCCCTGATTTGAAG-GGAAAAGGGATGATGGGATTGAAGGGGCTTCTAATGACCCAGATATGGAAACAGAAGACAAAATTGTAAGCCAGAGT--CAACAAATTAAATAAATTACCCCCTCCTCCAGATCAAGTCAGCTTAGTTTTTATTTG--GGTGATTTTTTTCCTGGGTTTGGGAAGGAGAGACAGGTC-TTGAGGGAAAGGTGGCAAGGATTTGGCCATATGAACAATCCATCAACAACGCTATAGTGTGTCCACTACAGCAGATGGTTTCACGCACCAAGGGGGATTCCAGCTGTGTAAGACAGCCTTAACCTCAAAGAATGCAGGCAGGACAAAAACACATGTCCAAACAAGG--------TACTCAGGCCCATG s canFam2.chr12 4106646 2951 + 75515492 AACAAAAATGTCTCAAACATTTGAGGGGAACATGCTATCCTCACCTCCCCTGGAAGT-ACTACCCATGCAAC---AAAAAAAGGAAAAATGATATGCGTGGGGAAGACATTTATTAGAGGCTACTTACCCACTCTATTGAACCCAGGGTGACTGGCACCGA-ATCACATACACACACACACACTGCCTCCTCTAAGGCTGGCTTTATacacacacacacaca---------------------cacacacacacacTTTTGTGTCCACAAATGCTGCCTGTCTCAGCACCACTTTCATTTCCTCCAAAGAATCTACTTAAATTCTCTAATTCCTGAGCTCTGTAGATTTCACTAAATATTTCAAGGAATATATGATGAGTGGATTACATTGCACACTCTAAAGCAAACAAATACAACTAATGTGCTAGACATTTCCATATTTCCGAGTGCCTCTGGGGAGCTCCCAGACTGGGAATGAAGCTTGTCTCCCTTTCTGA-TCCTATACC-ATCTTGCCATCCTCCTAGATCTGCCAGTGGACTTCAGATTTTTCTCCTATTTCACGGCATAGAAAAATCCCAGTCAGTCCTTCCTAGGCTGTGTATCCAAACCTGTGTGCCCAGACTCATGACATCCAACAAAATGCAAGCCTTAAGACTTACCTGCCCTCCTGACTTGTTCAAAGATCATTTATTTGTTCCTGAGAGTAA-----------------CTACCCCTCCCCCATACCTCCAGTGGCTTCT--------TCCTCCCCTGCACAGACTGGGCTCTC-CTTAAGAGGAACCAGGGAGAATGCTATTTTCTCATCTCCATC-----CTAGAGCCCCCCTCCCGGCCGCTTGCTCCTGGGGTGCTC-TGTCAGCAGAAGCTGAGGGGGAAGTGAGGCCTAGGACA-GGAGGAGGAGGGAATGAGGAGAAAGGGGAAGTTTAGGGGGAGGGCT-CAAAGCAGGCTGATGGGAGAG---GAAAGCCAGCAGACGGAGAGCACTGGCTTGATCTCTATCCACCTGTCTACCGGCCTCTCCATCAGCATCTGCTGAGCTATGAGCCAAACCAGGGATTTACAGGGTAGGGAAAAGTAGAAGAGGCAGCA-CCTAAAATGAGGGCAAGGAGATGGACAGACCTGGGGGGCGGGGGCAGGAAGGTTGTGAGCAAGCCCAGGAGGGCAGATTTGTGATTACCCTGGGCCAGTGTGTGGCTAAGAAGAGGGATGGGTAATGGGGGGTGGTAAGGAAACATTAACCTTTGTGCCCCCTCAGGAGGAAAAGCCTTCGGGCTCCTGAAGGCCCAGCAGGAAGACAGACTGGATGAAATCAACAAGGTAAAAGGAAGATCTAAGGGGGCCAGAG---GGGGGAGGGAACCAGG-------GGACCTATCCTGGCTCTTGCTTTCTCC--CACAGCAATTCCTGGATGATCCCAAATATAGCAGTGATGAGGATCTGCCCTCCAAACTGGAAGCCTTCAAGAGTGAGGGGAAAACTGCAGGGGCTGAGATGGGGGGTAGGGGGTGAGGAGGGTACAATTTCCTCAAGAACAGAGAAAGGACAGCAGAGACAGA--GTCTACATGTATGGTGGGGAAAAGAGAGGCTGCCTCTCCTGCCTTCCTG----GTTGCAGTCTCTTCCCTTGGGCTGCCCCTCTCAGCACCCTCTCTGGTTCCCTGTATCTTAATAGGGCCCCTCAAGCCATC--CAGCACTTACCCTGCCTGCCCTATCTCCCCCTTCCATGTCTTCCCCT--ACCTAGTGCTAGGTCAGCAGCCCCTTTCTCAAGTCCCTGCCCTGCTCCTGCCTGAGACCCTCCAGCCAGCACTTACCCTATCTGCTTTCTCCCCTCACCCAGAGAAGTACATGGAGTTTGACCTAAATGGAGACGGAGATATCGGTGAGAAAAGGGTGTTC--------CAGGGAAGTGTGCGGACCCAGGAAGAGGGAGGTCTCCCCTGGAGTGCTACATTCCTGGTGGTTTGGGAGAGGGTCCAGCTCCTAGAA---GAGGAACTAGAATGGAAATGTGAGGGTAAagacagagagagagagagagagagagggaCTCCC----TTCTTCCACCCCTCCTTTTGCACTTCTAGATATCATGGCCCTGAAGCGAATGCTGGAGAAACTTGGTGTCCCCAAGACCCATCTGGAGCTCAAGAAATTAATCAGGGAGGTGTCCAGCAGCTCTGGGGAGACCTTCAGCTACTCTGACTTTCTCAAGATGATGTTGGGCAAGAAATCTGCCATCCTAAAAATGTGAGAGTCCAGTTTCAACCTCTACTATGCGTACCTGTTTTCTCCTCCACCCT-----CCCCCATCCCCAGGCTCA-----CCTACACATTACTCAGTGTCCATTTCTTTCCTTCTTTGAGGGACCGTTCCACATTCCTG------TCCCTATCTGTTGTTCTGGTCTCCACACACCCCCAGCACTGCCATCCTTGCTCTTCTTCCCCCTCCCCCTACCATAATGACCACTATCCTCTTCCAGACTTTCACAGCAGCCTGAGATTTATTATCCCGAGAAGACTGACCCCTGATCCCTCTGTCTCTTTCTATCTCAACCAGAATCCTGATGTACGAGGAAAAAGCAAGAGAACAGGAGAAGCCAGCAGGTCCCCCAGCTAAGAAAGATATCTCTGAGTTGCCCTGAATTGTGGTAGGGGAGATGTGGTGGGATTTATGGGGCTTCTAATGACTCCCACATAGAAA-AGGACACAGAATTGTGAGCCGGAGGTACACTAAATTAAATAAACTA--TCCTTCTTCAGATCAAGTTAGCTTGGTCTCCATTTGGCGGGGATAGTTTTCCTGGGTTTGGGAAGAAGTGAAGCACCTTTGACGAAAAAGCAGCAAGGATTTGCCGATATGAGCAATCCATCCACAATTTTGTAACGTGTGAACTACAGTAGATGGTTTTGTACTCCAAGGGAGATTCCAGATATAT--GATAGTCTGGATCTCAAGGAATTTAGATGGGACAAAAGGACATGTACAGACAAAAAAAAATATTGCCCAGACCCATG a score=8392 s hg19.chr6_ssto_hap7 2915858 166 + 4928567 GAGCAAGGAATACCATGAACCAACATTctccaccactataagctttgtcactttgacaaatcactcagcctctgtgaggcttttttctaaaaatggggataaagtgacct-atgctattgtgcctgacaTATCATAAGCCCTCAATAATGTTTAAAACTTGAATGAg s canFam2.chr12 4109948 162 + 75515492 AAAGAAGGATTATCTTGAACCAATATTCTCCAtcac--tagtctttgttac-ctaacaaatcactaagcctctctgagtctttcatcagaaaatagggatgatatgacctCACACCAC--CGACTGACATATCATAAGCCCTCAATAATGTTTAAAACTTGAATAAa a score=3129 s hg19.chr6_ssto_hap7 2916346 52 + 4928567 TGAATGGGTAGATGAATGAAAGAACTGGTGCTATTAAATAAAGCAAAGAATT s canFam2.chr12 4110114 51 + 75515492 tggatgggtggatggatgAAAGAACTAATGTTATTAAA-AAAAAAAAGAACT a score=7646 s hg19.chr6_ssto_hap7 2916872 201 + 4928567 AGCCTCTGACTAAAATTCTCATCTGATTTCTGCAAACTTTTCTGCCTTCACTTTTCATAATGAATAAGCCGCCTCCTTTATTTAGCCATATCAGCCTAGGCACAGGCCCCCAAACTCATGCCTCCACTAATCTGTTCTCTGCACCTGAGATGTACACCTTCTTCTGAAACTTGGGTAAGTTCTAACTCGTTCTTCATATCT s canFam2.chr12 4112621 183 + 75515492 AGCCTCAGA-TAAATTCTTTATCTGATTCTTGTTACCTTTTCTCCTCTCA----------------GGCAGTCTC-TTAATCTAGTCACACCAGCCTAGGCACGGGACCCTAAAACCATGCCTCTCATCACCACTTCACTAGGCCTGAGCTGTGCACTGTCTCCTCAAACTTGGGTAAATCCTAACTAGTTATTCATATAT a score=3425 s hg19.chr6_ssto_hap7 2917577 68 + 4928567 CTTAATAAGAGT-----TTTTCTAGAAACATTTCTCAATCACCCCAGGCATAATCATATTTTATTTCTCTACt s canFam2.chr12 4112804 73 + 75515492 CTTAGTAAGAGTCACGTTTTTCTAGAATCATCTCTGAACCTCTCCAAGCAGGATCTGGTTTTGTTCCTCTACT a score=175786 s hg19.chr6_ssto_hap7 2918243 3575 + 4928567 TCTATAATATCCTGTGCATTATCTCCAGCGCCTTCAAATCATAGTCATTGAATGATCTGTTGAATGGGTA-TAACTCTGATGGGAGCAGAGAGTTCTAGAATCGGGTAGTAAGAGACAAAGGAGGGTAACAGTACTGCATTTCACAAAATGAAACCCATTGTTAAGAAATTACAAATTCCCAATAATTTCAAATATAAAAATTTATTCATGAAAATTATAGGTTATAAAATTAAATGTCCGTCTTAGTCGATGGTTGCCCATATTTTGATGAACGAGTCATTCCTAGCCTATCTTTGTTCAAATGATTTGCATACATTATGCAAATAGGTAGAACTGCCCGAAGAATGCCTACGCTGCGTGGTGCGGACGAAACGCTTCCCGGGGCCTTTGGATTGGTCTGTCTAGCCACCTCATTTGCATGACGTAATATAATAACTGGAAGGCCCCGCCCCTCTGGTGCATTTCCCCGCTCCAACCACCTCCTCAAACTCACGGCAAAGGGATGCGAGAGCTGGAACTCTTACCAGGCCTGCGGAAACTCAGCCCTCCGGCAGCTAATCCCGCCCGCCAGCCCCCGTCCTCTCTCTCTTTCTCCCTAGCTGAAGGCGCCACGGGCCGTGTGTCGTTGCCTTCCACTTTTGGCGTCCCAACGTCTCTCCGCTCCCATCTTTCTACTAACGTCCGACGCACGCTCCGCCTCTTTC--TCCCACATTCGTCGTGTAAATTCTGCGTCCCAACCGCCCAGCCGACCTGCACCGCATTCCCGCCCCCTCAACACGGCTCAACGGCCGACGCTGGGGGCCCGCCTCCTTAGCCAATCGGGGTCCTAGTGCCCTTAAGTCCCTCCTCTTTATGCAAATAACCTCCGCATGCTCCGCGCGCCCGGCCCTTTTTTTTTTTTTTTTTAAA-------------CTAAAGACAGCCCTGGAAGTAGAGG--GTTAGGGTAGAAAGTGCCCCGCCCTTTATGCAAATTAAGGGGCGTGTCTAGGCGCGGAGGGAGGTGGGAGGTGGGAGGGGGTGCTCCCGGGGGCGGCGGTTGCCCGGATGGGCCGTTAGTCGGGGCTCAGCCGCGGAGTGAGCGAGGGAGACGGGAGGAGCCGAACCCGGCGCCATCCGCCGCCATCCTCCCCCGCCCCACCGCCATCCCGTCCCGGGGAGCCCCTAGGCCCGGGTCCCGGATCCCCGCGCACCCGGCCAGGTGAGTCTGGGTGAACCGTGCGCTGACGCCCTTTTCCGGCGCGGGAGAggtggtggcggtggcggtggcggcggcggcggcggtggtggGCCGGGGG-GAGGAGAAGCTGCCATTAGCCGCCGCCATTTTGTCCTCCTGCTGCCGGG-CCTGCTTGCCCCTCCCCCTCCGGTACCTCTACTCCGGGACCCGCACCTCCGGCAGTTCATTCAGGATCCGTAGTCTGCCCCTAACCACCCACCGTCTTGGCTTCAGGGGGTGACCCCTGCGCCTGGGTCCGTAACTCCCTACCCTCCGCTGCGCTCCTGGCTT-TTCACCCCCATTTGTGGGCCCCCTCCCCGGCTGCCGCCCCGTGGTGGGCCGCGCCCGACGGTTCTCTCGGAAGGGCGCTTTTCCTCCATATTGGACC-CCCTCCTATCATCCAGCGCT-GTGTTCCCCCCTCTGGACGCCCCTCTTCGTGTCGAGCCACTCCCACTCTAGAATCCTGCTTTTATCCCAGCATCTTTGCTTTCTATGTTGCTCAGTCGCCCTATGTCTGCTTTTTCATTTTTCCTGTTCCTCGTCTCCTTTCTCCCCC-------AACCCCGTTTTTCTTCTTGGGCCTCT-------GCCCCCTTACTTCGTTGTCTACATCGTTTTTTTTTTTGCCATTCCTGTTTCCATATAT---TTTCCACCTGCTTTCGTATTCATTATTTTCTGTTAGTTTTGGTCTATTCGCTACATGACTCTTGTATTCGTTTTCCCTTCATATATTTATCTTCACAGATTGGCCTCCTCAAACACCTACGAAGCAACATCCATCTTATC-TCTAGCTTGTCATAAAGTTCTT-----TCTCCCCAATTTTA----GCTTTCATTCTGGGCCTGTCTGGATTTCCCTGCTTTCTTCCCCACTATTTCTCATCTCTTT-----ACACTGTTCCCGTCCATAAACGAATGCCTGGTCACTCTGGAATGGACTGAGAGACCTGTCGTCCGGCTTGCTTAGGGAGCTGGAGGTATCGAGTAAAGAAAC-ACTGGTGATGGACATTTTTAATGAGGATAGGAAAACGAAGATGGCTCTGGCCTTGGCCCTCTGTTTTCTGGCCCATGGTTACAGGGTGCT-AAGGTGGCTCCATAATGC----TTTTTCTCAGTTCTTCATATGGTAAAACAG--------------TATTTCATCTGGAGGCGA-----TTTTTTCCAGGAGCCAATACAGGAGCAAGTTTAGGAAAAGATGGG----ATATTTCAAATACTTGAGGTTCCTATAGCCTGGGAGTATGTACAGCCCTAGTTGTTCTATGAGGATTTCTCTGGTACCAACCCCCATTCCGGCTGAGCAAGCTCATAAAATCCTTAAACTCCCAGCATACCTTCCTGCAAACCTTCCCAGATGGACACGAGGCTGCTGGGCTGGGAGCCTGGGGTACAGGGCCCTGGGGGCATGATTAGGGAGCTTGTGTCCAATAAACAGGGAATCTAAAGTGTTGTTTCTTCTTCTCTGATGGAATTG-TATGCTTCTTTTTTAGTTTTCTCTTG--CTTGAATTTGTCCTGTT-----GTAAGTCTCTGAAACGATTTTGGTGGAGAGAGAAGAGATTATTACTTGTAG----------GGAATTACTCTTTGTAGACAGGCACAAAGGGCAGAGTGTTTA-TACTAGGAGGATGCTGGATTTTT-ACTTAGATTTCCTTGACAA-AGGTGTCTGGGGGAAAGGAGGGAACATGGCATTTGAGCTATGAGGGAGCTAAGTAGATCATGGTTGCTTA-AGAAGAGTGGGCAGTTTACAT-AGACTGGAGGAAAAGACACCAGAGGGCCTCATATCTGAGTCCCTAATGATAA-TGCAATGGAGTTTTTAAGTTTCTGTTATGGTCTGTACAGGGGACAGAGACTGAGACACTTGCTGTCTGGCCCACAGGCTCTGGCACGTTTTGGGGGAGGTGCCTGCAGGACCCAACATACTCAATGAGCTTCCAGCGCAATGTCCGATCGCTCGGGGCCGACTGCCAAGGGAAAGGATGGAAAGAAGTATTCCTCGCTCAACCTGTTTGATACGTATAAGGGCAAGTCCTTAGAGATCCAGAAACCCGCTGGTGAGAGTCCTGCAAAGATGCTTCTGATGGTTGAAAGCTAGGCATGCATGGGGCATACGTTTTAGAGCTCTTTAAAGGGAAGTGGCTGTAGTAGAAATACCAAAAGACTAGAGGA--------GATTTCCCAACTTTACACTGGGTCCTTTAAAGGGGGTGTGGGCTCTGGGTGAACACCAGTTATCCTCCTACAAAGGCGTGTCTGTGGTTCCCTGTCTTTGGACACGTAAGAATTGGAGGAAAATAAATGTGGATTTGGGAAACTTTGAGGCCAGCTTGCTTCTTGCAGGCTCATGATCAACCAATCTCACATAAAAGTATTGAATGTTACATATCTCAGCCTTCT s canFam2.chr12 4112877 3493 + 75515492 TCCATAACATATTGCG-GGTATCTCCGGGGCCTTCGAAACATAGTTGCCGAACCATCTGCGGAATGGGTAGCAGGTCTGATTGGGGTACAG---------------TAACAGAAGACAAAGGAGGGAACTAGCAC---ATTTCGTAGAATGAAACCCATTGTGAAGAGAATACGAACTGCCAGCAGTACCAGATATACAAATATATTCAGGAAAACT----GTTATAAAATTAAATGT--GTCTTATTCATGGGCTACCGATTTGTTGATTAAGAGGTCGTTCCAATCCTATCTTTGTTCAAATGATTTGCACGTATTATGCAAATAAATAGAACTAGCAAAAGAAGATCTCCCAAGCCGGGGGCCGACGAC-CACGCCCCTGGGCCCTAGGATTGGCC-GTCTAGCCACCTCATTTGCATGACGTGATTTAATAACTACAAGGTCCCGCCTCTCCG-TGC-TTTCACTTCTC----------------------GCGAAAGGACGCGTGAGTTGGGACTCTTCCTTGGT-TACGTAAGCTCCGCCCCCCAGCTGCTAATCCCTTCCGCCCG-----GTGCTTTCGCTCCGTCTACTCCGCCGAAAGCTCTACTACCCTTGCATCGTTTCCCTCCACTCTCCGCGTCCCTACGTCTCTCAGCTCTCATCTTTCCACGAACACACGACGTATGCCCCGCCCCTTCCCCTCCTCAATTCGTCGTGCAAATCCTGCGCCCTAACCGCCGGGACGACCGGCACTGCATTCCCGCCCCCTCTACGCCTCTTAACGGCTGACGCCGGGGGCTTGTCTCTTTAGCCAACCGGCGTCCTAGCGCCTGAAAGTCCTTCCTTTTTATGCAAATAACCTGTGCCTGCTCCGCACGCCTTGC----------------TTTAAAAAAAAAAAAAAAACTAAGGACAGCCCTCGAAGTAAAGGAGGCTAGGGAAGGTGGTGCCCCGCCCTTTATGCAAATCAGGGGGCGTGCC-ATGCGCCGAGGGAGGCGGGAGGTGGG-GGGGGTGCTCCCGGGGGCGGCGGTTGCCCGGATGGGCCGTTAGTCGGAGCCCAGCCGCGGAGTGAGCGAGGGAGACGGGAGGAGCCGAACCCGGCGCCATCCGCCGCCATCCGCCCCCGCCCCACCGCCATCCCACCTCGGGGAGCCCCTAGGCCCCGGTCCCCGACCCCCGCGCACCCGGCCAGGTGAGTCTGGG-GAGCCGAGTGCTAACCCCCCTTTCCGGCGCGGGAg---------cggtggcggtggcggcggcggcggcggcggcggGCCGGGGGAGAGGAGAAGCTGCCATTAGCCGCCGCCATTTTGTCCTCCTGCTGCCGGGGCCTGCCTGCCCCTCCCCCTCTGATACCCCAGCTT-GGTACCCGCACCTCCAACCCCTCACCCAGAGTCCGTGGCGTGCCCCTAACCACCCGCCTTCCCGGGTTCATGGGGCGACCCCT-CTCCTGGGCCCCTGGCTCCCCTCTCCTAGCTGCACTGTTAGCCTCTTCACCCCAATCTGTGGGTCCCCTTCCTCGCCGCCACTC--TGGTGGGCCGCGCCCGACGATCCTC--GGAGCGTCTCCTTTCCTCCATATTGGGCCACCCTCCCATCACCCAGTGCTCGGGTTCCCCGTTCTTGACGCCCCTCTTCGCCTCGAGTCACTCCCACCCTAAAACCCTGCTTTTATCCTA-CATCGTTGCTTTCTACGTTCTTCAG----CCTTTCTCTGCTTTTGTATTTTCCCTATTTTTATTTTCCTTTCTCTTCTCTATTTGAACCCCCCTTTTTTTCTTGGGTCTCTTGACATTGCCTTCTTACTTTGCTTTGTA------TCTTTTCTTTACCATTTCTGGTTGAGTGTATGATTTCTCACCTGCTTTCGTGTT-GTCATCTTTTATTAGTGTTACTCCACCATTTTCCTAACC-----------TTTTCCATCATGTATTTATCTCCAAAGATTGGAGTCTTTCAGCACCTACACGGCAACCCCCATTCCTTCATCTTACCTATTTTAAAGTTCTTGGTTTTCATCCTGATTTTACCGAGTTTTTATCGTGGGCCTGCCTGGATTTAAC-------------ACCACCTCCCATGTCTTTCCTGTACATCATTCCTTCCTATAAATGAATGCCTGGTCACTCAGGAACCGACTGA-CGATGCAGAGTTCGGCCTGCTTAGGGAGGAAGGGATAGTGGGGAGAGAAATGACTGCTGATGGACATTCTTACTGAGGGTAGGAAAATGAAGTAGTTTCTGGCTTTGGCCC--------------CATGGTTACAATGTGCTTGAGGTGGCTCCATAATGTATTGTTTTTCTCAAATCTGCATAGCGTAAGCCAGAGCCCACCAGTGTTTATTTCGTTTGGAGACCAGATTTTTTTTTCCAAGAGCTGGGATGGGGGCAAGT--GGGAAAAGATGGAGTGAATATTCCAAATACTTGGGGTTC-TGTAGCTTGGAAGTATATAGAGCCCCAATT---CCATGAGGAATTTTCTGGCACTAGCCCCCAGTCTGACTGAGCAAGCTTGTAAAATCGTTAAACTCCTGGCATACCTTCGTGCAAACCTCCCCAGATGGGAGTGAGGCTGCTGGGA------------------------AAGGGCACAGTTAGGGAGCTGGTGTCTGATAAGTCAGAAATTGAAAGCTCTGTTCCTTGC---AGGATGGAGTTCCTATGCCTCTTTCT-GGTTTTCTCTGGGACTGGGACTTGCCATGTTTTATCATACATCTCTGGAATGTTTTTTGTGGAGGGAGAAGGGATTATTACTTGCGATAATGAAGCAGCAGCTACTTTTTATAGGCTGGCACCAAAAA-AGAGTGTATACTACTAGGAGGATATTGGATTTTTTATTTGGATTTCCTTGGCAAGAGGTATCTGGGGGGAAG-AGGAACCATGGCATTTGGGCTCTGTGGGAG---------------TTGCTTTTAAGGGACTGGGGAGTTTGAATTAGGCTAGAGGAAAAGACA---GAGGGCCACATATTTGGGCCCGTAATGAAAAATGAAAAGGAGCATCTGGATTTCTCTTGGAGTCAGTAAAGGAAGCAGAGACTGAAACACCTTGTGTCTGGCCCACAGGCTCCGGCACGTTTTGGGGGAGGTGCCTGCAGGACCCAACATACTCAATGAGCTTCCAGCGCAATGTCCGATCGCTCGGGGCCGACTGCCAAGGGGAAGGATGGAAAGAAGTATTCCTCGCTCAACCTGTTTGATACATATAAGGGCAAGTCCTTAGAGATCCAGAAACCTGCTGGTGAGGGTCCTCCTAAGATGTTCCTAATTCCCAAAGGCTGGGCATGAATGGGGCATACATTTTAAAGTTCTTTGAAGGGAAACGGTTGAGGTACAAGTATCTGAAGACTAGAGGATTACTAAAGACTTTCCAGCTTTATCTTGGGTCCCATAGGGGACAT-TGGGCTTTGGATGGACACCAGTTACCCTCCTACAAAGGCATGTCTGTAGTTCCTTGTCTTTGGACATGTAAGAATTGGAGGCAAAGAAATGTGGACTTGGAGAAGTCTGGGGCCAGCTTGCTCCCTGCAGGCTCAAGATGAACCA-TCCAACAGAGAAGTATCAAGTGTAATGCATCTTAGTGTTTC a score=58811 s hg19.chr6_ssto_hap7 2922140 1231 + 4928567 CAGCGCGATTTCAGAGATTATTAAGGGCAGGGGAAGGAATCCCTTCTAAGAGAAGTTTGGAGGAAGTAGGTAATAAAATATTCAACATGTATAAATGTGTCCCAGGATAGGAGGCCATCAGATCTCCCACATGAGGCATTTTCGACCCTCTCTCCGTCTTGTTCTCCAGTTGCCCCTCGCCATGGCCTGCAGAGTCTCGGGAAAGTTGCCATTGCCCGGCGTATGCCACCTCCAGCCAACCTTCCAAGCCTGAAAGCCGAGAACAAAGGCAATGACCCCAATGTCTCACTAGTGCCAAAAGACGGAACAGGATGGGCAAGCAAACAGGAGCAGTCCGACCCCAAGAGGTAGACAGAGGCTTGGGGGACCTAGAGTGATGGGTATTTTAACTT-GAACTTCAGGGAGCATTGGGGCTTGGTTTAGTCCAGCCACGTCTGAGCCAGAGACGAAGAG--GTCCCTTTCTTACCTGTTGCAGGTTCCTTGTTAAATGACTAAGGAATGGTACTAAACTTTAGCTTTTTGTCTTGGAGAGAGAGCATGAAAAAATAGACAACAGCCTACAAAGGATGACAAAATTAT-----TTTGTCCTTA-TATTTGTAAATGGTAGCA-ATGGGCATGATTTCAGTCCTGAGTCTCCACCAGTTGGAGAAGTCAGGGAGGCATCTCAGGTGTGA-ATAACCTTCCCATTCTG---TCCCCTCAGTTCCGATGCCTCAACCGCTCAGCCGCCGGAATCGCAGCCACTGCCGGCTTCACAGACGCCTGCCTCCAACCAGCCGAAACGACCCCCAGCAGCCCCCGAGGTACCTGGAGAACTGGA---------GGGGTGGGGAGGAAGAATGGTTCATAGCTGCCCCACCCACATCA---TTTATCATCTTTCTGAACACTTCCCCAGAACACTCCTTTGGTTCCAAGCGGGGTAAAGTCCTGGGCACAAGCCAGCGTCACCCATGGAGCACATGGAGATGGTGAGTGCAGCACTTAATTGGGGAGCTGTGTCTGGGCACCATGGGATGCATGAACCCTGCACTGTATTTTCAGCCAAGTGACCTTGGTCCTCTTTGGCTAAATCAAGGACCACCCATATTCAGTTTCATGGAGGCACATGAGCAAGTTTAAGTCTCAGTCTTATATGATGGAGTGTAGTGGTGCCAGAACTGACCTC----CTTGGGGAATAAGCAGTTATTCTGTAGCGGGG--TGAGTTTGAAGGCGGGAAACCTGATGGTCTGGTACCTGTCAG s canFam2.chr12 4116370 1193 + 75515492 CACTGGAATTTCAGAGATTGCTGAGGACAGAGGCAGGAGTGGTTTCTAAGAGAAGTT-----------GGTAACGA--TATTGAG---GTATAAATGGGGCCTAGGGTAGGAAACTGTCAGATCACCCACCTGGGGTGTTTTTA---CCCTCCCCATCTT-TTCTCCAGTTGCCCCTCGCCATGGCCTGCAGAGTCTCGGGAAAGTTGCCATTGCCCGGCGTATGCCACCCCCAGCCAACCTTCCAAGCCTGAAAGCTGAGAACAAAGGCAATGACCCCAACGTCTCACTAGTGCCGAAAGACGGAACAGGATGGGCAAGCAAACAGGAGCAGTCCGACCCCAAGAGGTAGACAGAGGCCTGGGGGACCCAGAGTGATAAGTATTTTAACTTTGAACTTCAGGATGGATCGGAGACTAGTCTAGCCCAGCCACCTAAGCTCCAGAGACTGAGGGAAGCTCCTTTCTTGGCAATGCGAGGGCTCCCATTAGAGGTCTCAGGAATGACACT----TTTAGCTTTGTGTCAGGTTGAAGGAAAAC-AACAAACAGATGACACTGTATGTGGGGTGACTAGGTTATAGTATTTTGTCACAAGTGCTTGCGAATAATAACACATGGGCTTGGGTCTACTTTCTGTCCTCCACCAATTGGAGAAGTAGGGGAGGCATCTCAGGTTCCAGATAATCTTTCTGTTCTACTATCCTCTTAGTTCCGATGCCTCAACCGCTCAGCCGCCGGAATCGCAGCCACTGCCGGCTTCACAGACGCCTGCCTCCAACCAACAGAAACGACCCGCAGCAGCCCCCGAGGTA--TGAGGAACTGGATGGCATCAAAGGGCTGGTGGCTAGAACGGTTTGTAGTTCCAATACCCACATCGCTGTTTATTATTTCTCTG----CTTCCTCAGAACACTCCTTCGGTTCCAAGCGGGGTAAAGTCCTGGGCACAAGCCAGCGTCACCCATGGAGCACATGGAGATGGTGAGTGCAGGGCT-GCTTGGGGAGCTTGCTCTGTGCACTGTGGTAGGCAGGAG---TGTTCACTCACTTTAGCAAAGTGTTTTCAGTCCTCT--GGCTAAATTTTGGTCC--TCATGTTCAGTTTCATGGAT-CACGTAAGCCGA------------------------GGGTGAGGGTATCCCAGGACTGACCTTGTTTCTTGGGGAATGAATA--CACAGTGTAATAGTGCATGAGTTTGAAAA----AAATTTGATGATTTGGTACTGATCAG a score=71721 s hg19.chr6_ssto_hap7 2923680 1166 + 4928567 CTTCCACTTTTATAGCATGTCCTCAGGAAATGT---------CTTCTGTCTCCTGTTCTGCATCCCCATCCTAATAGGTGGAAGGGCATCAAGCCTACTGTCACGATTCTCTCGAGAGGAATTTCCGACCCTGCAGGCGGCTGGCGACCAGGACAAGGCTGCCAAGGAAAGGGAGTCTGCCGAACAGTCGTCTGGGCCCGGACCAAGCCTCCGCCCCCAAAGTGAGTGGCTGCCTTTTGG----------------------------------CCAAGACATTACCT-ATTGCATCTCAGAGCTAGGTGCTGGCTTATTCACCTTCCTCCCCATCACTTTCAGCTGTGTTCACTTGTCCTCCAATCATTGATACCTCTCTCTACCTTTTCCAAAATACAGATTCTACAACTTGGAGGGACGGAGGTGGGCGTGGCCCTGATGAGCTGGAGGGCCCGGACTCCAAACTTCATCATGGTCATGATCCCCGGGGTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGAATGATGCCGCCTTTCGTGAGTCTTGGTGTCTTGTCTTGGAACGATTACACTGGAAGCTGGAGAGCTAGGAATCAGGACTTAGTCTTTGACCTATGAGATAGAAGGGAGGGTGGGAGGATGATTGATAGCAGGCTTAAGGAGCTAGAAGGGTATATGACTGTCCCTCTGAGCAGCTACTGTTGGACCCTTTTACAGATGTATCCCCCATATCTCCCGTTCCCTCCGCCCTATGGACCCCAGGGGCCTTACCGATACCCCACTCCTGATGGGCCCAGGTGAGCAATCCAGGTCTGGGTTTGTGGCTGGGGGCAGGGGAAGCTTATTGGGGGAGGAGATGGTTTTCTAGCCAGGAGGCTCAGTCTAGGATCAGTCTCGCATGTGGTTATACAACATGCCATATTTCATTTTCT-----------TTTTTGTGTACAGCCGTTTTCCCCGTGTGGCGGGCCCCCGAGGCTCAGGGCCACCAATGCGCTTAGTAGAGCCTGTGGGTCGTCCCTCTATTCTCAAAGAGGATAATCTCAAAGAGTTTGATCAGTTGGATCAGGAGAATGATGATGGTTGGGCAGGTAAGTGGATATTAAGGGTCAAGAATTTGGATCTTGAAA-GGCAAAACCTAATGAGGAAAAAAAAATACAGGGTTATGTGGGTGAAAGGCAGACATTGAAGTGTAGG s canFam2.chr12 4117563 1149 + 75515492 CCTTCAGTTTTTTAGTATCTTCTCAGTAAATGTGATTTTTTTTTTTGGTTTGCTGTTCTGCACGCC------AACAGGTGGAAGGGCATCAAGCCTACTGTCACGATTCTCTCGAGAGGAATTTCCGACCCTGCAGGCGGCTGGCGACCAGGACAAGGCTGCCAAGGAAAGGGAGTCTGCCGAACAGTTGTCTGGGCCCGGACCAAGCCTCCGCCCCCAAAGTGAGTGGTTGCCATTTGGGAGTTGAATTGGGGGGTGGGTGGTTATATTTTGCCCAGAACAATACCTTAGTCCATCTCAGAGCTAAGTGTTGGCTTATTCACCTTGTTCCTCATCATTTTTGGCTATGTTC-------------------------TTCTTTGTCTTCTTCAAAATACAGATTCTACAACTTGGAGGGACGGAGGCGGGCGTGGCCCTGATGAGCTGGAGGGCCCAGACTCCAAACTTCATCACAGCCATGATCCCCGGGGGGCGCTACAGCCTTCGGGCCCGCCCCAGTTCCCTCCCTACCGCGGAATGATGCCGCCCTTCGTGAGTGTGCATATCTTATTTTGGAGTGGTTGCACTTGAAGCTGGAGAGTTAGCAGTTAGGACTTAGCCTTTGA------AGGGGACAGGGAGG---------------ATAACAGGTTTAGGGAGCTGGCTGCGTAT----TTGTCCCTCTAAGCAGCTACTGTTGGGCCTTTTTGCAGATGTATCCCCCATATCTCCCGTTTCCTCCGCCCTATGGACCCCAGGGGCCTTACAGATACCCTACTCCTGATGGGCCCAGGTGAGTAATCCAGGTCTGGGCTTGTGGTTGGAGACAAGGGAAGCCTCTTAGGAAGGAAGATGGTCTTCTAGCCTAGAGGCTGAGTCT-----------TGTATGTGGTTCTATAACATGCCATCTTTTACTCTCTCTCCATTTGTCTTTTCACACACAGCCGTTTCCCCCGTGTGGGGGGTCCTCGGGGTTCAGGGCCGCCAATGCGCCTTGTAGAGCCTGTGGGTCGGCCTTCGATTCTCAAAGAGGATAATCTCAAAGAGTTTGACCAGTTGGACCAGGAGAATGATGATGGTTGGGCAGGTTAGTACATATGAAGGATGAAACGTTTTGGTTTGAAAAAGGCAAAATCTGATGAGTAAACAGG------GGATTGTGTGGGAGAAAAAGAGACGCTGAAGGGTAGG a score=46351 s hg19.chr6_ssto_hap7 2925156 893 + 4928567 GAGGATGGATGG-GGAATACCAAGTCCTTGCAAAGTGGTGAGAGGAGTAAGAATGACAAGACTTCATTGGTGGATCTAGACTTCGGAGGGAAGGATATTGGCATTGGTAGTCCATCTTGTTACATAGTTCCAGACTACCTCCC-----------------AAGATTGGAGGGCAGAATGCTTGGGTTACTAATACTCATATTTCCCCT-CAGGGGCCCATGAAGAGGTTGACTACACTGAAAAGCTCAAGTTCAGCGATGAGGAAGATGGGCGAGACTCTGATGAGGAGGGAGCTGAGGGCCAGTGAGTTAGGGCCATCAGGGGAGAAGAGGAGGGGGTCTTGGTTTGTATTTTGGTAATATACTCTTAGAGGAGTATATTAGTTGC-AGCTGATTTTAATTTCACTGTTGATCTGCTCACAGCAGGGATTCCCAATCAGCTTCTGGTGAGGAACGGCCCCCTGAAGCAGATGGCAAAAAGGGCAACTCCCCCAACAGCGAACCGCCCACTCCTAAGACGGCCTGGGCAGAAACCTCTCGGCCTCCAGAGACAGAGCCGGGACCTCCTGCCCCAAAGCCTCCCCTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCCTGGGGACTACCCAGTGAGTGTCTCCAATAAGGGATTGAGA-GGGTCAGCTGTGGGAAATTGGTGTCAGCTGAGTAATTGAAGCGGTTGTGATATAGA-----GGAAGGGGGGTGCTAAAAATGGGCTGTGTGAAGTGCCAGGCTGCAGAACATC-CTGGGAAGCTTTTAAATATCTTTGGTAATAGGGGAGTCTGGGTAAGAAGTGAGAAACTGGGATGCTAATGAGGAAAGAAGAAAAAGGAGCCCTGGGTGTTTGGGTTTCGGAAGGAGAGAGGGAACAGAAAAATAAAAA s canFam2.chr12 4118712 863 + 75515492 GCAGACACATGGCGGAAAGCCAAGTTCTGGTAAAGAACTGAGATA--TGGGAACGCGAAGACCCACACTGTGGCTTCA---TTCAGAGGGGT-----TTGGTGTTGGGAGTGCATCGCACTGTGTAATATTAGACCCCTTCCTGTGTTCCGAAAGTTATGAGAGTTAGAGAACAGAATGCTTGGGTTATCAGTTTTCACTTTCCCCCCACAGGGGCCCACGAAGAGGTTGACTACACTGAAAAGCTCAAGTTCAGCGATGAGGAAGACGGGCGAGACTCTGATGAGGAGGGAGCTGAGGGCCAGTGAGTTAGGG-----------------------GGCTCAGTTTCTCTTGCAGTAATACCCTCTTAAAGGAGC----TGGTTTCTAACTGATTTTAATTCCACTGTTGGTCTCCTCACAGCAAGGAGTCCCAATCAGCTGCTGGTGAGGAACGGCCCCCTGAAGCAGATGGCAAAAAGGGCAACTCCCCCGGCAGCGAACTGCCCCCTCCCAAGACGGCCTGGGCAGAGACCTCTCGGCCTCCAGAGACAGAGCCGGGGCCTCCTGCCCCAAAGCCTCCCCCACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCCTGGGGACTACCCAGTGAGTGTCTACAATGAGGGGTTGAGAAGGGTCAGTTGTGGGAGAGGAGTGTCGGCTGAGAAGTTGAAGCACTAGTAATTGAGAAAGCTGGAGGGAGGGT--CAGGAATGGGCTACAGGAAGTGTAAAGCAGTGGAGCATCTCTGAAAAGGTTTGGAGCCTCTTTGGTGTTAGAGGATTCTGGATTAAAAG----AAATTGGGATGCTAGTGAGGAAA-------AACGAGGCCTGGGTATTTGGGTCTCTGAAAG-------GAGCGAAGAAGTAAGAA a score=46331 s hg19.chr6_ssto_hap7 2926189 833 + 4928567 CAGGATAATGAGTTTGTCACCACCCAGAGAGATCAAC--CCCAAAGCCTGGGTCGTTGCATCCTGCAAGTAGCGACAGTTGATTTGT-TGTAAAAGAGATGATAGAAAGCATAGTAACTGATTCCCCTGGCCCTGCTGGGTCTTGCCAATTGACAGGATCGTGGGGGTCCTCCCTGCAAGCCCCCAGCACCTGAAGATGAGGATGAGGCATGGCGGCAGCGACGAAAGCAGTCGTCATCTGAGATTTCCCTGGCAGTGGAGCGGGCCCGGCGACGGCGAGAAGAAGAGGAGCGGCGCATGCAAGAAGAGCGCCGGGCAGCCTGTGCTGAGAAGCTCAAGCGACTCGATGAAAAGTTTGGGGCACCTGACAAGCGGCTCAAAGCAGAGCCTGCTGCCCCACCTGCTGCCCCT------------------------------TCTACCCCAGCTCCACCACCTGCAGTCCCTAAAGAACTCCCTGCACCTCCAGCTCCACCTCCAGCATCAGCCCCAACACCAGAGAAAGAACCTGAAGAGCCAGCACAGGCCCCTCCTGCCCAATCTACTCCTACTCCAGGTGTGGCTGCGGCTCCCACTCTGGTGAGTGGTGGTGGCAGTACCAGTAGCACCAGCAGTGGCAGCTTCGAAGCCAGCCCAGGTATGGAGATGGGGATAGG-TACTACCAGATGTCAGATCACTGCTTCAAGGTGCTTAAAGGTGCAGGGTGGTAAGGCTGGGGATAAATGAAGTAGAAGGCAGTTGTTTTGGTTTATTGGACTATCAGTGATAGTG------------TTCTATCATTTG----TATATCTGAAGGAGGGAAGGTTTTG---TCTGGAATCTTAG----GTTGTAGTCTAATACCATTTC s canFam2.chr12 4119575 862 + 75515492 TAGGACAA---GTTGGTCCCTACCCAAAAAGGCCACCAACCCAAGGCC--AGTTCCTGC-CCCTACAGCTAGAGACAGTTGATCAGTATGTGACAAAGATAA---GAAACTTGATGACTGATACCTCTGGCCCTGACGGGTCT-GCCCATTGACAGGATCGGGGGGGCCCTCCTTGCAAGCCCCTAGCACCTGAAGATGAGGATGAGGCCTGGCGGCAGCGGCGAAAACAATCTTCATCTGAGATCTCCTTGGCCGTGGAGCGGGCCCGGCGCCGGCGTGAAGAGGAAGAGCGTCGCATGCAGGAGGAGCGCCGGGCAGCCTGCGCTGAAAAGCTCAAGCGACTTGATGAGAAGTTTGGGGCACCTGACAAGCGGCTCAAAGCAGAGCCTGCTGTCCCACctgctgctgctgctgctgctgctgctgctgctgctgctgctcctgcCCCAGCTCAGCCACCTGCAGTCCCCAAAGAAAATTCTGCACCTCCAGCTCCTCCACCCGCACCAGCCCCGACACCAGAGAAAGAACCAGAAGAGCCGACACAGTCCCCCCCTTTCCAGTCCACCCCCACTCCAGGTGTGGCTCCAGCTCCCACCCTGGTGAGTGGTGGTGGCAGTACCAGTAGCGCCAGCAGTGGCAGCTTCGAAGCCAGCCCAGGTATGGTGATGGGGATAGGGTACTACCAGGTGTCACATCTTTTCTCTTGGGG--CTGAGGGTGCAGG-TGGTATGGATGGG---------------AGGCAGTTGTTTCAGTTTATTGGATTATCAGTGGCAGAGAAAAGGAGTCCCTTTGCGCGTGTGGGTATCTATCTAAGGTGGGAAAGGTTTTACTATCTGCATTCCTGGATGAGTAGTGGTCTGAAGCACTTGC a score=44709 s hg19.chr6_ssto_hap7 2927468 1124 + 4928567 TTCCTATAGGCCAAGACTGAAGAAAGTACTGTTGTTCTAATGGTTTCATAGAAAGTTAATGCCACCACCATAGGCTCATGAGAGGCCATGAAGTGCTTTAATGGGTCTTAAATGGGAGGGGCTTCAATAGAATAGATGTTGAATAGAATATTTTAGTCTTAAGGGAGCTAGAGATGAGACGTGAGATTCCTGG-GGTGTTC-ATGGAGTGTCTATTGTTGGACTAGATCACTCTG-TTGTGTTTTTTCCGATGCAGTGGAACCACAACTGCCCTCAAAAGAGGGTCCTGAACCACCAGAAGAGGTTCCTCCTCCTACCACACCCCCAGTTCCAAAGGTGGAACCCAAGGGTGATGGGATTGGTCCCACCCGCCAGCCCCCTAGTCAGGGCTTGGGCTACCCCAAATATCAGAAGTCGTTGCCTCCTCGTTTCCAGCGGCAGCAGCAGGTGAAATCAAGTTGTTTACCCTC--TAAGGGCTGCTTTTCTTCCTGGCTTCGGTCCCTAATTCTCTTCATAAGTTACCTTCTGGGTCCCTTTGCTTCTTTGTCCAGTTGTCTCCATTGTCACGCC---AATTTCCCCTAGTCCAAGTTTTTTCTTTGCTGATTCCTT------------------TGTCCATGTGT--GCTTTGAGCCTCTCTCATCTTGTCTTTCCT--------------------------------------CCTTTCCTAGGAGCAGCTCCTGAagcagcagcagcagcaccagtggcagcagcatcaacagGGCTCTGCCCCTCCTACCCCAGTGCCCCCATCACCACCACAGCCTGTGACCCTGGGGGCTGTGCCAGCTCCACAGGCTCCACCCCCGCCCCCCAAGGCCCTGTACCCAGGTGCTCTGGGCCGGCCCCCACCCATGCCCCCAATGAACTTTGATCCCCGATGGATGATGATTCCTCCTTATGTGGACCCCCGGCTCCTCCAGGGTCGTCCCCCTCTAGACTTCTACCCTCCTGGTGTGCATCCCTCTGGTAAGGGGGCATGGGAGGAGTGAGAAACAGGAAAGTCCCCTCAGTCTTAGGCATTGGATATTAGGGTCTTACTGTGATTCTGGTACGATAGGTTTTGCCCATCATAGTGATGAGGGAAGGGCATATGCTTAGCACTGCTGAGATAGCTCT--GTTGCAAAAATGGGCTTAG s canFam2.chr12 4120444 1071 + 75515492 TTAGCATGGAGTGAGACTGAAGACAGTGTC--TGTTTTGGCGGTTTTTTGGGAAGTTCACTCCATCATCATTGGCTCTTGA------AGTAAGCGCTT------ATCTT------------------TAGAGAGGGTGCT---------------------------CTAGAGTTGAG--------TGCCTGGAGGTGTTTTGTGGCAGGTCTCTCCACAAACTCGTTCACTCTGATTATCTTTTTGTCGATGCAGTTGAACCGCAACAATCCTCAAAAGAGGGTTCTGAACAACCAGAAGAGGTTCCCTCTCCTGCCACGACCCCTGCCCCAAAGGTGGAACCCAAAGGTGATGGGGTCGGTCCCACCCGACAGCCCCCCAGCCAGGGCTTGGGCTACCCCAAATACCAGAAGTCATTGCCACCACGGTTCCAGCGACAGCAGCAGGTGAGAGCA---TTTTTTCCCTTGGTAAGAGCGATTTCCCTCCCTG--CTCCATGTGTACCTGTTCTAAGGTGTCAGCTT--GAATCCCTCTACTATT-------ACTGTCTCCAGTGTGTCATCCTGGCTTTTATTTAGTCCTGATCTTTTATTTTTTATTTTTTTGAGTCCTGATCTTTGTTACGTCTGTGTGTTAGCGTTG----TTTCTGGGCTGGTTTTTTCTGTTAGGGGCGAGGCAAGGGTTTTGATGGCCTCTGTTGTCTTTCCCCAGGAGCAGCTTTTGAagcagcagcaacagcagcagtggcagcagcatcaacagGGTTCTGCTCCACCTGCTCCGGTACCACCATCACCACCGCAACCTGTGACCATGGGGGCTGTGCCAGCTCCACAGGCTCCGCCACCACCCCCCAAGGCCCTGTACCCAGGTGCTTTGGGCCGGCCCCCACCCATGCCCCCGATGAACTTTGATCCCCGCTGGATGATGATACCTCCTTATGTGGATCCCCGGCTCCTCCAGGGCCGGCCCCCTCTGGACTTCTACCCTCCTGGTGTGCATCCCTCTGGTAAGGG--CCTTTGAGGGGTGGG---TAGGGGA--CGCTGCAGTCCCAGGAA--------------ATTGCTGTGG-------ACGAAGGGCC--------CCTGGGTAAGGAGGGAGGGTGTGTGCTTAATGTTGCTGAGATTGCTCTTTGTTTCAGGAATGGCCTTAG a score=26130 s hg19.chr6_ssto_hap7 2928946 530 + 4928567 GAAAGAAGCAGTGGTCCTTCATTTGCCAGGATTTATTTGGGGTGGG----------------------------------------------------------TTGATTCTCTTGTAGGGAATCTGAGTG-----GATAACCTTGTTATATAAGAGCAGGCAAGGCCCGGACCTACTGGGAACAAGAGATGGAAGAGCTGACTTGACCGCGA-------------------GGGGAGATGCTTTTTGGGCTGGAGGGCTTGTGACAT-GAATAGGATTATTTTTCTTTTTC-TTTGGTTTCTTCAGGCCTAGTTCCCCGAGAGCGTTCAGACAGTGGGGGCTCAAGCTCAGAGCCATTTGACCGTCATGCACCTGCTATGTTACGGGAACGGGGCACTCCACCGGTGGATCCAAAGTTGGCCTGGGTGGGAGATGTCTTCACCGCCACACCCGCTGAACCCCGCCCACTTACCTCACCTCTGCGCCAGGCTGCGGATGAGGATGACAAGGGGATGAGGTGAGTCTTGGTCATGAGAAATGGGTGAGTTCACAGTGAAAGGATCTAGGCCTGGGAGAAAGGTACTTTGGGTTAGTGGT--AGGGATAGGGATGAAC s canFam2.chr12 4121515 612 + 75515492 GAAGGAAAAAGGGGGCTTTCATTGGCCAG-ATTTATTGGGGGGGGGGGCAATTCATTGATTCATTCAtacacttgattttagacagaaggccaagaagtgatCATCAATTCATTCATAGGGAAGCTGAGTGTATCAGATAACACTTTCAGG--GGAGCATGTCAGGACCAGACTTGCAGGGAGTAAGAGCTGGAGGAGTAGACGTCGACGTGACTAACAGAAGTAGATGGGGGGAGAGATGCTTTTTGAGCTGGATGGCCTATCACATAGAAGAGGGCTAGCTTTCTCGTCCGTCTTGTTTTCTTAGGCTTAGTTCCCCGAGAGCGCTCAGACAGTGGGGGTTCAAACTCAGAGCCATTTGAGCGTCATGCACCTCCCCTCTTACGGGATCGGGGCACCCCACCAGTGGATCCAAAGTTGGCCTGGGTAGGAGATGTCTTCACCACCACATCCACTGACCCCCGCCCGCTTACCTCCCCACTGCGCCAGGCTGCCGATGAGGATGACAAGGGGATGCGGTGAGTCTGAGCAGTG-GAAGTGGGTGCATTGCCAGTGAAAGGATTTGGGCTAGGAAAAGAGGACCTTGGGATTATTGGTTAGGTGACAGGAATAAAC a score=412518 s hg19.chr6_ssto_hap7 2929619 7083 + 4928567 AGTAAAAGAGAGTCTGCATCATAATAAAGTGTTCTTTTCCCACCTAGTTCTGGTTTTCCT------GAGATACTTA--TTTCCATTCTTTCTGTCTGTCTCTTCAGGAGCGAGACTCCTCCAGTACCTCCCCCACCACCCTATCTGGCCAGTTATCCAGGCTTTCCTGAGAATGGAGCCCCTGGGCCCCCAATCTCTCGCTTTCCTCTGGAGGAACC---------AGGGCCCCGTCCACTCCCCTGGCCCCCAGGCAGTGATGAAGTGGCCAAGATACAAACTCCACCACCCAAGAAGGAGCCCCCTAAGGAGGAGACTGCACAGCTGACGGGGCCAGAAGCAGGCCGAAAGCCTGCCCGCGGAGTCGGGAGTGGAGGCCAGGGCCCCCCACCACCACGCAGAGAGAGTCGCACAGAGACCCGCTGGGGCCCTCGTCCAGGGAGCAGTCGTCGTGGAATCCCTCCAGAGGAGCCAGGGGCCCCACCCCGCCGGGCTGGGCCTATAAAGAAACCTCCACCACCTACAAAAGTAGAAGAGCTGCCTCCCAAGCCCCTCGAACAGGGGGATGAAACCCCCAAACCCCCAAAGCCAGACCCACTCAAGATAACCAAGGGGAAGCTAGGGGGCCCCAAGGAGACCCCACCCAATGGAAATCTTTCCCCTGCCCCAAGGCTTCGGAGGGACTATTCGTATGAAAGAGTGGGTCCTACCTCTTGCCGGGGTCGGGGCCGAGGCGAGTATTTTGCCAGAGGGAGGGGTTTTCGGGGGACCTATGGGGGACGAGGGCGGGGAGCCCGAAGCCGGGAATTCCGCAGTTACCGAGAGTTTCGAGGAGATGATGGGCGTGGAGGTGGGACAGGGGGACCAAACCACCCTCCTGCTCCCCGAGGCCGCACTGCCAGCGAGACACGGAGCGAGGGTTCAGAGTATGAGGAAATCCCCAAGCGGCGCCGGCAGCGGGGCTCAGAAACAGGCAGCGAGACCCATGAGAGTGATCTGGCTCCTTCAGACAAGGAGGCTCCCACACCCAAGGAGGGAACACTCACCCAGGTCCCTCTCGCTCCCCCACCACCAGGAGCCCCACCTTCACCAGCCCCAGCCCGCTTC---ACTGCCCGGGGTGGGCGAGTCTTCACTCCCAGAGGGGTGCCATCTCGCCGGGGCCGAGGAGGAGGGAGGCCCCCTCCTCAAGTTTGCCCAGGCTGGAGCCCTCCAGCCAAGTCTCTGGCTCCCAAGAAACCTCCCACAGGCCCTTTGCCACCAAGTAAGGAGCCTTTGAAAGAGAAGTTGATCCCAGGGCCTCTGTCCCCTGTGGCGCGCGGAGGCAGCAATGGAGGTAGCAA------TGTGGGCATGGAAGATGGGGAGCGACCCCGAAGGAGGCGACATGGGAGGGCTCAGCAGCAGGATAAACCGCCTCGTTTCCGGAGGCTGAAGCAGGAACGGGAGAATGCCGCAAGGGGGTCTGAGGGCAAGCCC---TCCCTAACCCTTCCAGCCTCCGCTCCTGGACCTGAGGAGGCCCTCACAACAGTCACAGTGGCCCCAGCACCTCGCCGGGCAGCTGCCAAGTCTCCTGATCTGTCAAACCAGAACTCAGACCAAGCCAATGAGGAATGGGAGACTGCATCAGAGAGCAGTGACTTCACCAGTGAGCGCCGAGGGGACAAAGAGGCACCCCCACCAGTACTGCTGACACCCAAGGCTGTGGGAACTCCTGGGGGAGGTGGAGGTGGAGCCGTACCAGGTATTTCAGCCATGTCCCGCGGAGATCTGAGCCAGAGAGCCAAGGATTTGAGTAAACGGAGCTTCTCAAGTCAGCGGCCAGGCATGGAACGGCAGAATCGGCGCCCTGGCCCAGGGGGCAAGGCTGGCAGCAGTGGCAGCAGCAGTGGAGGAGGCGGTGGGGGTCCTGGAGGAAGGACCGGGCCAGGACGAGGCGACAAGAGGAGCTGGCCCTCTCCCAAGAACCGAAGGTGGGTAGGAACAAAC----AAATTTATTGTGGTTTAAAAATTGGAGGAGGGGGGAAAAGCCTGAGGGAAAGATAAGTTTGGGTGTAGTGGAGATTG------TGGCCTGAGGGGCCATGGGCTCTAGAATGTCAGTAGGATTTCCATGTCTGGCTAAGGCAACTGGAAAGCGGTTGGTAGGGTGTTAGAGTCAAGAACACCCACCTATGTATTCATTGCTGGTTCTTTGCTTTCCAGTCTGTGCATCTGTACGCATAGGAA--CCCTTAGAAGGACTCAAAAACACCTGGACTTTAATAGGGAAGA-GAATAGGTTGTAAGCAGAAGTTGGGAAACATAACTTGTGGGAAA--AAGTAACGATTTAGTGGATACTGGAGCTAATGCTCT----GTTTTCTCCAGTCGTCCTCCAGAGGAGCGTCCCCCGGGGCTTCCCCTGCCTCCCCCACCTCCCAGCAGTTCTGCTGTCTTCCGCCTGGACCAAGTTATCCACAGCAACCCTGCTGGCATCCAACAGGCTCTGGCCCAGCTTAGTAGCCGTCAAGGGAGTGTAACTGCACCAGGGGGTCATCCAAGGCACAAGCCTGGGCCTCCCCAAGCCCCTCAGGGCCCCTCTCCTAGGCCCCCAACCCGATACGAGCCCCAGAGGGT------CAACAGCGGCCTCAGTTCTGGTAAGCTGGAGGGGTTATGGGTGGGAATATCTCCATCCCCAGAGAAGGTCAAGTGCTGGAGGGAGCGGGTGGAGAACCTGGCCTAGGGGCCCTGCTGCTGGGTGCGTTTCTGCAGGGAGCAAGGGTAGAAGAATTGGGAGGTGGAGTAGAGAGGAAAAGTTAGGGTCAGTGGCAGAGCCAGGCAGATGCTGACCCTT--TTTCTCTTTCCCAGACCCCCACTTTGAGGAGCCGGGGCCAATGGTGAGAGGGGTGGGTGGGACTCCTCGGGACTCTGCCGGGGTTAGTCCCTTTCCCCCTAAACGTCGGGAGCGGCCTCCCAGAAAACCAGAGCTGCTACAGGAGGTAAGGGATG-GGTTTGAGATTGTGCTTCACTGCACTCTTACTCGTGAAAATTCTTCTGGGTTATGTTTTCTCTGTTCTCTTTCCTGTTTCTTTCACTGTGTTTTTACTCCAGAATTCTCAGTATTAGTCTCCCATGTGTCTCCCTTGTTGTCCCCACACCCTGTGTCACCCCACTCTGTCCTGGCTTCCTATAATTCCCAATTCCCACCCAATTCATGTTTTGCTTCTGGCCCTTCTCATCTGTAGGAATCTTTGCCACCTCCTCATAGCTCTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCACAGAGGCCCTGACCCCTCACATCTGGAACCGTTTACATACTGGTGAG-TAAAGCTG----AGTGAAAGGACTATGGTAGAAGGGTTAAGAATGAGAGGGGCTTCTGAACTGTCATCTCCTCACTTCTCTTCTGGTTGGTGCTCCCTTCTCCAGCCACTAGCCGAAAGAGTTACCGGCCCAGCTCCATGGAGCCTTGGATGGAGCCCCTGAGTCCTTTTGAGGATGTGGCTGGCACAGAAGTGAGTGAGGGTGGGAGGGTGTGTCTGAGCTGGGACTTTTTTGAGCACTGGTCATACCCCCCACCTGCTCTGGGTTGAGTCTGGAGCTGTTCTCTCACTTGGCTGTCCCCTTTCTGCAGTTTGTATGTGTGCATCAGTCAGGTATTGGGGTGCTTTCTACCCTGACTTAACTAGCTCCTTCTCCACTCCTCTCAGATGAGTCAGTCTGACAGTGGGGTGGACCTGAGTGGGGATTCTCAGGTGTCATCAGGTCCCTGCAGCCAGCGAAGTTCCCCTGATGGAGGACTCAAGGGGGCAGCAGAGGGACCCCCCAAGAGGCCTGGAGGCTCCTCACCCCTGAATGCTGTTCCTTGTGAGGGTCCACCTGG---------CTCTGAACCTCCTAGGAGACCACCACCTGCCCCCCACGATGGGGACAGAAAGGTAAAAGACCAAAAAAGG------ATAAGGGGAATGTTTCCAGGAATCTGACTTTGGCCCTACCTTTTTCTGCTTTTTCTCTCTGCGTGTGTGTTCTGGGCATTCCAATTTGGATTTCCCTTTCCCTCCCCCAATGCACTTTACTGTGTGCCCAATCCAGGAGCTGCCCCGGGAGCAGCCTCTGCCCCCTGGCCCCATTGGCACAGAACGATCACAGCATACAGACCGAGGCACAGAGCCTGGCCCCATTCGGCCATCCCATCGACCTGGTCCCCCAGTCCAGTTTGGCACTAGTGACAAGGTCTGTGTGGGCTGGATCTGGGTATCCTGAGTTGGGTGGAGAGAAGGGAAGGACTAAAGGTGGGACATAGAGGACACATGTCT---GTCACGGGACAATGTCTCCTGCCTTCTTGTGATCACAGGACTCAGACTTACGCCTAGTGGTAGGAGACAGCTTGAAAGCAGAGAAGGAGCTAACAGCATCAGTCACTGAGGTAAGTGGG--AGTAAGAGTTTGGTGGAAAGGCCCAAGATTTCTGGGGAAGATTGCTGGGAGTGACC----AGGGCGTCCAGGATGCCAGACATCCCTCTCCACGAGGCCTCTCCTTCCCAGGCCATTCCTGTATCACGAGACTGGGAGCTGCTTCCCAGTGCTGCTGCCTCTGCTGAGCCACAATCCAAGAACCTGGATTCTGGGCACTGTGTCCCGGAGCCCAGCTCCTCAGGCCAGCGCCTGTATCCTGAGGTTTTCTATGGCAGTGCTGGGCCTTCCAGTTCTCAGGTAGGC------CCCGCTTCCCATTGCATGACCCCTTCAGTGAATAATAATTTTTTTCTGCCTGGTATGTATTTATAATCAAGCCTTTCTACGTTGCAGAGTTGTGAGATACCACTTTGTCACATCATTTTTCTCCCTACTTTTTGCTTCTATGGGTGGGATGGTGATCTTTTTTCTTGACCACAGATACTAAAGCTGTTTCAACCGTGCTCCTCTCCTGCAGATCTCTGGGGGAGCCATGGACTCTCAGTTACATCCAAACAGTGGAGGCTTCCGCCCTGGGACACCCTCACTGCACCCTTACAGGTAAGACTCGATGCCTGTGGATCACAGAAGTACTTGGAGATGTGTTTCGGGGAGAGGGAAGGGGAAGACACAGTTCTAGGGTACTAGAAGCTAGTGGACTT-------------AAGGCATTGCTAGGACTCTGGCTTCCTAACAGCTTTTCTCCCCAC---AATT-----TATTTTCAGATCACAGCCCCTATACCTACCCCCCGGCCCAGCCCCTCCCTCAGCACTGCTCTCTGGGGTAGCTCTCAAGGGCCAGTTTCTGGATTTCTCCACAATGCAAGCTACAGAGCTGGGGAAGTTGCCGGCTGGAGGAGTTCTCTACCCTCCACCTTCCTTCCTCTACTCTCCGGCTTTCTGCCCCAGTCCTTTGCCTGACACATCGTTGCTTCAGGTAAGAGGGGGGCAGGTATTAGATATT--GGGGGATAGG---GTAGGGAGAATGATTTTGTGGGGGTTGATATATTTCTCCCTGT--TTCCCGACAGGTACGCCAGGATCTGCCATCCCCTTCGGATTTTTATTCTACTCCTCTGCAGCCTGGTGGCCAAAGTGGCTTTCTCCCTTCAGGGGCTCCTGCCCAGCAGGTATATTGTATCTTCACACTTCCCC--TTCATTTGATTTCTCTGTCCAGTTGCTGGCTT-------TGATTT--TCCCTGGTTTTCTGACATTCCTCCCTGCCCCCAACATGCA--------CACCCAAATTTCTTGTTACAGATGCTTCTACCCATGGTAGACTCACAGCTGCCTGTGGTGAACTTTGGCTCCCTGCCGCCAGCACCACCTCCTGCCCCACCTTCCCTTTCTCTGTTACCTGTGGGCCCTGCTCTGCAGCCCCCCAGCCTGGCTGTGCGGCCCCCACCTGCTCCTGCTACTCGGGTGCTGCCTTCACCTGCCAGGCCCTTCCCCGCTAGCTTGGGGCGAGCAGAGGTAAGGTACAGGAACTGAGGGGCTAGGGAGCG-CCAAGACTTGGGAGTAGGGATTCTGTATTTC-----------------AAGGTAGGCAGCTCATGA--TTTTTTTCCCCTCAGCTGCATCCAGTGGAACTAAAGCCGTTCCAGGATTATCAAAAACTGAGCAGCAACCTTGGGGGACCTGGATCATCACGGACTCCCCCAACTGGAAGGTGA---AACGGAATAGGGATGTGGACTTTCCA-----AGTGCTTCCTTACTTTGGAACCAGGGTCTGGATCCTAGGCTTGCCTTAGACGCCCTTCTTCCCTTAGGTCCTTCTCTGGCCTCAATTCCCGTCTCAAGGCCACGCCTTCCACCTACAGTGGAGTCTTCCGCACCCAGCGCGTCGACCTTTACCAGCAGGTGAAGGAGAAACCCTTGTGGCCCCAACTCTAAATTC--GAGTTGCCACCTGATTTCCTGTCCTTCCGTCTCATCGCTGACCTCTCACTGTGACTCACTGTTTAACACATGCCTGTCCCCTAGGCCTCCCCACCAGATGCCCTGCGCTGGATACCTAAGCCTTGGGAGCGGACAGGGCCGCCACCTCGAGAAGGGCCCTCCCGACGGGCAGAGGAGCCTGGGTCCCGAGGGGACAAGGAGCCTGGGTTGCCCCCACCCCGCTGAGGGAGTTCCTCTTGCCCCCTA-CCCCCGGGGCTTGTATATAGATTATAAATATATAAGGGGGAAAGGGGTGGGCGGGGAGGGGTTCTGGGGCTGGGGCCTCACTTCCCCTCC--TCCCCCTTCCCCTGGTCCCCTGTCCCTGGGGCTGTTTGTTAAAAAAGAGTAATAAAAGGATTTAAAAAAAAAAACTTCTACAATGATTTGGGGGATGAGTTG----TTTGCATTGTCTTAAAGCATGGTGCTGAGTGATCTGTAGTTTCAGTCAGGGAAATATTCATTACTTATTCCAGTGAGCTGTTGAAA------ctaaaaacatgaccatcgtattggatctttaaatttttgtgagtctggaatttgggctgagctcagctggataaatctgcttttttgtgccagtgagcgaggtcaactggttatcagtctgcagctgacacctgggctggtcccaatatggcttcctttgcatatctagggccttggtg----------ggacatctgtaacattactgggttatcaaccagtgtcttcacatggactctccagcaGG s canFam2.chr12 4122127 7003 + 75515492 ATTAGAGGAGTGTTGGGGTACTAATAGTGTTCTCTTTCTCTACCTAGTTCTGATTTTTCTCATTCTAAGTTACTTAATTTTCATTTTTTTGCGTGTCCCTTTTTAGGAGTGAGACCCCTCCAGTACCTCCCCCACCACCCTATCTGGCCAGTTATCCAGGCTTTCCTGAGAATGGAGCCACTGGGCCCCCAATCCCTCGCTTCCCTCTGGATGAACCCACTCCCCCAGGGTCCCGTCCACTCCCCTGGCCCCCAGGCAGTGATGAAGCCACTAAGATACAGGCTCCACCACCCAAAAAGGATACCCCCAAGGAGGAGACTCCACAGCTGATGGGGACAGAAGCCAGCCGAAAGCCTGCCCGAGGAGT------TGGAGGCCAAGGCCCCCCCCCACCTCGCAGAGAGAGCCGCACTGAGACCCGCTGGGGCCCTCGCCCAGGCAGCAGTCGTCGTGGGATCCCTCCAGAGGAACCAGGGGCCCCTCCCCGCCGGGCTGGGCCTATAAAGAAACCCCTACCACCTACAAAAGCTGAAGAGCTGTCTCCCAAGCCCCTGGAGCAGAGTGATGAAAGCCCCAAGGTTCCAAAGCCAGAGCTCCTCAAGACGGCAAAGGGGAAGATGGGGGTCCCCAAGGAGACCCCACCTAGTGGGAATCTTTCCCCTGCCCCTAGGCTTCGGAGGGATTACTCCTATGAAAGAGTGGGTCCTGCCTCTTGTCGGGGCCGGGGCCGAGGCGAGTATTTTGCCAGGGGGAGGGGCTTTCGGGGGACTTACGGGGGCCGGGGACGGGGAGCCCGAAGCCGAGAGTTCCGCAGTTACCGAGAGTTCCGGGGAGATGATGGGCGTGGAGGTGGAGCAGGGGGACTGAACCATCCTCCT------CGAGGTCGCACTGCCAGCGAGACGCGAAGCGAGGGTTCAGAGTACGAAGAGATCCCCAAGCGGCGCCGACAGCGGGGTTCAGAAACGGGCAGTGAGACCCACGAGAGCGATCTGGCCCCCTCAGACAAGGAAGCTCCCCCCACCAAGGAAAGAGTGCTCACCCAAGTCTCTCTTGCTCCTCCACCATCAGGAGCCCCTCCTTCACCAGCCCCAGCCCGCTTTTCGACTGCCCGAGGTGGGCGCGTCTTCACTCCCAGAGGAGTGCCATCACGCCGGGGGCGAGGGGGAGGGCGGCCCCCTCCACCCATTTGTCCAGGCTGGAGCCCTCCAACCAAGTCCCTGGCTCCCAAGAAGCCTCCAGCAGCTCCTTTGCCACCAAATAAGGAGCCTTTGAAAGAGAAGCTGATCCCAGGGCGTCTGTCCCCCGTGACCCGGGGAGGCAGCAGTGGAGGCAGCAACATGGGTATGGGTGTGGAAGACGGAGAACGGCCCCGACGGAGGCGGCATGGGAGGGCTCAGCAGCAGGACAAACCGCCTCGGTTCCGGAGGCTGAAACAGGAACGAGAGAATGCTGCCAGAGGGGCAGAGGGCAAGGCCTCTTCCCTAGCCCTTCCAGCCCCCAGCTCTGGAGCAGAGGAGACACACACAACAGTGTCTGTGCCCCCACCCCCTCGCCGGGCAGCTGCCAAATCTCCTGATCTGTCAAACCAGAACTCTGATCAAGCTAATGAGGAATGGGAGACTGCATCAGAGAGCAGCGACTTTGCCGGTGAGCGCCGGGGGGACAAGGAGGCTCCCCCACCAGCACTGCTGACCCCCAAAGGTGTGGGAACTCCTGGGGGCAGCGGAGGTGGAACCGGACCAGGCATTTCAACCGTGTCCCGTGGAGATCTGAGCCAGAGAGCCAAGGATTTGAGCAAGCGGAGCTTCTCAAGTCAGCGGCCAGGCATGGAGAGGCAGAACCGGCGCCCGGGCCCAGGCAACAAAGCTGGCAGTGGTGGCAGCAGCAGTGGAGGAGGTGGTGGGGGACCTGGAGGAAGGACCGGCCCAGGGCGAGGGGATAAGAGGAGCTGGCCCTCTCCCAAGAACCGGAGGTGGGTAGGGACAGGCTGTTCAGTTTATT----TTTAAGG--TGGAAGAGGGGAGAGAA-CCTGAAGGGAAGGTTCAGTTGATTGCGGTGAAGTTTGATATGTGAGGGTGAGGGCACAGGGGCTGCTGGGCACCA----AACACCTGTGTCTAGGGAAAGTAACTGGAAAGCAGTTGA--------TTGAGTCAGGAGCAACC----GTGTCTTTTCT----GTTCTTTGTTTTTCA--CCGTATAGCTCCAGGCACAAGGATTTCATTAGACGTAGTTGGGAACACCTGGGTTTTAACAGGCAAGAGGAAGGGGTTATAAG-----ATTG---------ACTGGTAGGGAAGGAGTTAACAATTCCAGAAATATCCTAGCTAAAGTTCTGTTCGTTTTCTTCAGCCGACCTCCAGAGGAGCGGCCCCCAGGGCTTCCTCTGCCTCCTCCACCCTCCAGCAGTTCTGCTGTCTTCCGCCTGGACCAAGTTATCCACAGCAACCCCGCTGGCATCCAACAGGCTCTGGCCCAACTCAGCAGCCGCCAGGGGAGTGCAGCTGCACCAGTGGGCCACCCAAGGCCCAAGCCTGGGCCTTCCCAGACCCCTCAAGGCCCCTCCACTCGGCCCCCAACCCGATATGACCCTGAGAGGGCCGCTAACAACAACAGCGTTAGTTCAGGTAAGCTGGAGGGGCCGAGGGCAGGAATGTCTCCATCCCCAGGGAAG---AAGATCCGGTGGCAGAGGGGGAAGAGTCTGGCCAGGGGACCTTGACGCTGGGTGC----CTGTACTGGACAAGGGTGGAAAGATTGGGA-GCCAAGTAGC-AGGAAAGGCTAGGCTCAGTGGTAGCGCAGAGTAGAAGCTGACAGATACTGCCTTTTTCCCAGACCCCCACTTCGAGGAGCCAGGGCTGATGGTGAGGGGGGTGAGCGGGACTCCCCGGGACTCTGCCGGGGTTAATCCCTTCCCCCCAAAACGACGGGAGCGGCCTCCCAGAAAACCAGAGCTGCTGCAGGAGGTGAGGGATGAAGCTTGAGCTTGTGCTTTACTGCTCTAT----------AGTCCTTTT---TTGTCTTTTCTCCAT----TGTCCTGTTCTCATCTCTGTGTCCTCACCCCAG-ATTCTCAGTATTAG-------------TCCCTTTCTGCCCCA-----------TACCTCACTCCGGCCCAGGCTCTTCCAGTCCCCGGCCCCCACCTCATTCATGTTTTGTTTCTGGCTTTCCTCACCTTTAGGAATCTTTGCCACCTTCTCATAGCTCTGGTTTCTTGGGCCCCAAGCCTGAGGGCCCAGGCCCTCAGGGAGAGTGCAGAGATACAGGGACAGAGGCCCTGACCCCACACATCTGGAACCGTTTACATACTGGTAAGATGGAGTGGTAGCAGGGGAAGGGCTCTGTCAG-AGGGCCAA----GAGGGCAGCCTCGGGATGGTC----TCTCACTTCTGTC--------TGGTCCTCTTCCCAGCCACTACCCGGAATAGTTACCGGCCTGGCTCCCTGGAACCCTGGATGGAACCCCTGAGCCCTTTCGAGGACGTGGCTGGAACAGAAGTAAGTGACAATGGGAGGGAGTATCAGAGCTGGGATTCTT------------------CTCCACCTGTTCTGGGT---GTCCGG-GCTATGCAGTCACGTAGTTG---------TGTTATTTGT---CAAACATCAGTCAGGTATTAGGGTGCTTTCCACCTTGACTTAACTGATTCCTTCTCCACTCCTCTCAGATGAGTCAGTCTGACAGTGGGGTGGACCTGAGTGGGGATTCTCAGGTGTCATCAGGTCCCTGCAGCCAGCGAAGTTCCCCTGATGGAGGACTCAAGGGGGCAGCAGAGGGGCCTCCCAAGCGGCCTGGAGGCCCCTCATCCCTGAATGCTGTTCCTGGTGAGGGTCCACCTGGCTCTGAACCCTCTGAACCTCCTAGGAGACGGCCACCTGCTCCCCATGATGGGGACAGAAAGGTaaaaaaaaaaaaaaaaaaagataaaaGAGGAATATTCTTGAGACTCTGAATTTGGCCTTATGTTTTTCTCCTCCTTC-CTGTTCTTGTGTGTCCTGGACATT--------------CCTTCATTTGCCCAAATTTCCTTTACT---TCCCCAACCCAGGAGCTGCCCCGGGAGCAGCCTCTGCCCCCCGGCCCCATTGGCACAGAACGATTGCAACGTACAGACCGAGGCCCAGAGACTGGCTCCCTCCGGCCATCCCATCGACCTGGTCCCCCCGTCCAGTTTGGCACCAGTGACAAGGTGTGCATGGGCAGGATCTGAGCACC-----TTGGGTGGAGAGGAGGAAAGGATTGGAGGTGGGATGTGGAGGATATGCATCTTGAACCACAGAATGATCTCCTTTGCATCACT---ACCACAGGACTCAGAGTTGCGCCTAGTGGTAGGAGACAGTTTAAAAGCAGAGAAGGAGCTAGCAGCATCAGTCACCGAGGTGAGTGGGACAATGAGAGCTTGGTGGAAAGGTCTTC-AGTTATGGAGATGATGGCTGGGTGTGACCTCGATGGACGTCAGGGAAGCT-GACTTTGCTTCTGACCAGG---CTTCTTTACAGGCCATCCCCATATCCCGAGACTGGGAGCTGCTCCCCAGTGCTTCTGCCTCGGCTGAGCCACAATCCAAGAACCTGGGCTCTGGGCACTGTGGCCCAGAGCCCAGCTCCTCAGGCCAGCGCTTGTACCCAGAGGTCTTCTATAGCAGTCCCGGGCCTCCCGTTTCCCAGGTAAGTGACCTGCCTGCTTCCTATCCCATGAACCC-------------------CTTCTGCCTGCTGT-CCCTCAAAATCCAATCTTCCAAT-TTGTGTAGTTGTAAAACA----TTTATAGTTTTGTTTTGCTTCTTGC-TTTTACTGTAGTAGGTGGGGTGG-GCAGTCTTTTCTTGACCAGAAAAACTGGAGCTATTCCAGCCTTG--CCCCTCCCGCAGGTCTCGGGAGGAGCCATAGACTCTCAGTTACATCCCAACAATGGAGGTTTTCGTCCTGGGACACCCTCTCTTCACCCTTACAGGTAAGATTGGATGCCTGTGGATCTCAGAAGGAAAT-GAACTGTGTTTCAG----------TGGGGAGGCCTGTTTCAGGGGTACCAGAAGCTGGTAGACTTTTAGCTCAGAACAAAGGAGTAAGT--GATTCGGGCTTCCTGAC-TCCTTCCTCTGCACCTAAATTTTGCCTCCCTTCAGATCACAGCCCCTGTACCTCCCCCCGGGCCCAGCGCCCCCCTCAGCACTGCTTTCTGGGGTAGCTGTCAAGGGCCAGTTTTTGGATTTCTCTGCACTGCAAGCAACAGAGCTGGGGAAGTTGCCAGCTGGAGGAATCCTGTACCCTCCACCTTCCTTCCTGTACTCTCCAGCTTTCTGCCCCAGCCCTTTGCCCGACCCACCTTTGCTTCAGGTGAGAGATGGGCAGGTGCTGGGCTTTTAGGGGGTTAGGGGTGGCGGGGGGATGCTTTTGGGGCAGTTG--ACATTGCTCCCTGTTGTCCCCAGCAGGTGCGCCAGGATCTGCCATCCCCTTCGGATTTTTATTCTACTCCTCTGCAACCCAGTGGCCAAAGTGGCTTCCTCCCCTCAGGGGCCCCTGCCCAGCAGGTAACTTTTGTCCTGCCACTCACCCTTTTCATCTG--TTCTCTATTCAATCTCTGGTTTATTTGTCTGATTGTATTTTTGGTTTTCTGATATTCTTTCCTGCCCTCGACACCCCTCCCTCATCACCTGTATTTCTTATTGTAGATGCTTCTACCCATGGTGGACTCACAGCTGCCTGTGGTGAACTTTGGCTCCCTGCCACCAGCGCCACCTCCTGCCCCACCGCCCCTTTCTCTGTTACCTGTGGGCCCTGCTCTGCAGCCCCCCAGCCTGGCTGTACGACCCCCACCTGCTCCTGCTACTCGGGTGCTGCCTTCACCTGCGAGACCTTTTGCCCCTAGCTTGGGGCGAGCAGAGGTAAGGTACAGGAACTGAAGTGTTAGGGATCTCCCAAGAGCTAGGCGTGGGGATTCAGTATCTCAGGATCAATTGGGTTGAAAGGCAGGAGGCTCATGAATTTTTTTTTCTTTCAGCTGCACCCAGTGGAACTAAAGCCCTTCCAGGATTATCGGAAACTGAGCAGCAACCTTGCAGGACCTGGATCATCACGTACTCCCCCATCTGGAAGGCAAGAGGAGGGTGTGGGGATGCAGATTACCCATCCATATGGCTTTCTTA---GGGGACCAGGGAGCAGGT--TAGGCTTGCCTCAGACACCCTTC-TCCTTTAGGTCCTTCTCTGGCCTGAATTCCCGTCTCAAGGCCCCGCCTTCTACCTACAGTGGAGTCTTCCGCACCCAGCGCATCGACCTCTACCAGCAGGTGAAGAAAAGACCCCTGTGGCCCCAAGTCTGAATCCAAGAGTTACCATCTGAATTCCTGTCTTTC-----CATCCCTGGCATCCCAGTAGGACTTATTTTTGCACATGTGCCTGTTCCCCAGGCCTCTCCACCAGATGCCCTGCGCTGGATGCCGAAGCCCTGGGAGCGGACGGGGCCACCTTCTCGAGAGGGGCCTTCCCGACGGGCAGAGGAGCCTGGGTCCCGAGGGGACAAGGAGCCTGGATTGCCCCCATCCCGCTGAGGGAGTTCCCCTTGCCCCCCACCCCCCGGGGCTTGTATATAGATTATAAATATATAAGGGGGAATGGGGTGGGTGGGGAGGTGTGCTGGGCCTGGGCCCTCGCTTTCCCCTCCACCCCCCCTTCCCTGGTCCCCTATCCCTGGGGCCGTTTGTTAAAAAAGAGTAATAAAAGGATT----AAAAAAAATTTCTGGAATGATTTTGGGGATGGGTTGGTTTTTGATCTCTTCTGGCAGTATAGTGCTCAGGGATCTGTAGAGAGGTTTTAGGGAAT-----TTACTCCCCCCAATGATGTTTTAACAAGCGGTCTCAAATCTGTTCTGTTGTAT------ATTGAAGTCTCACGGGCTGGGAATTAGAGCTGGCCTTCACTGG-TGAAT---GATTCGTATGCCATTGAGTGAGGTCTGCTGGCTACCAGTCTGCAGCTGGTGGCTAGGCTGGTGCC-ACAGGTCTACCGTCGTGTGTCTGGGGCTCTGGTGTTTATCTCAAGGGTAGAAAAAATCCCACTGGGTTGTCAACCAGTGTC------TGGTTTGTCCAGCAAG a score=568 s hg19.chr6_ssto_hap7 2936702 72 + 4928567 CCTGTTAAAT------------------------------------------------------------GTCCGTGAGCTCATGTTCCAAGAGGTCTAGCTGGAATTTTCTAAGCTTATGCCATG--CTTAGT s canFam2.chr12 4129325 132 + 75515492 tttgttaaataaaatatttaaaaaaaaaaaaaaaaaaaaaaaaaGGTGGTAGAGTCCCAGGGCCTGCTACGTCC--gagttagtgttccaagaggtcccagcggaaactgtgaagcctatgacctggccttagt a score=3068 s hg19.chr6_ssto_hap7 2936780 387 + 4928567 AGCACTAAACTAGCCAAGGTAGGGGATGGGGGGGTTTAGAAGGGACTTCAA------CTGCATCTCA-AAGGGACTAGCAAAGAATTTGCAGCCATGGGACTTCAGTTCTTTATGATGAACTAAGGGGAAATCTCTGTTAAGGCCTCAATGTTGGAGCACACTTAAGGGGCTCTTTGAATTGGATAGACCAATTCCAGCATTGTCAAACTAAGTGGGATTTCACATGGTAACGCTGCATGCTAGTTATGCTAAAGACTATACTTAGGTCTGCAGCTGCTCAGAAACTTTTTTTGATGGGTAATTTGAGAGCTCTATGCTAGTGTGCACCTGGAATATGCTCCCAACTCAAAATACAGGTTTTTTATTTATATATAAAGTGCTTTCGCACAAAAA s canFam2.chr12 4129484 281 + 75515492 agcactaagctagcca----acggga-------------acgggactgcaagcaggcgtgtgtctcaggagggagcagcaaagaatttgcagcc-------------TCCTCATGGT----------------TTTGTTCCAGCTGCAA-ATGAGAGGAC-------GTGCCTTTAAAGCTGCTGTGGC----TGCAGCA----------------GAGTTCTACCAGTCACTCTGCA----AGTCATGCC-AAGAGTGTG-TGAAGTCTGCAGCTGCTTAGAAATCGTTTTTCA--------CTGAAACCACTTT-----TGTCCAT----------CTCTGAACTCCA----------TTTCGTTTACATGTAAAACGCTTTTGCATGAAAG a score=223208 s hg19.chr6_ssto_hap7 2937521 4201 + 4928567 ACACAACAGTGTTCCAAGGAAGTATTAATTTA----AAAAAGTTCACACAAGATTAAGGGACACACTACCTAATGGAGACAATGTAGAGAGAAAGCAGCCAGAAAAATCCGACTTTTATTTCTTAAATACTGTGAAGGAAGAGGGGGGAAACGGTCCCCTGATGAGGAAGGGCCATAGAGCAAAGAAAGAGCTAAGGATCATCAGCAAAGGCCCGCTGGGCATTGGGGAAGCGCTGGGGACTGTAGTTGGGGTCTTCCTGCAGTCGTTTTTGTATATCAGACCGGAGCTAAAGAGAAAAAGTAAGCAGGTTGGAGAAACGCTGGCCAAGTCCCTATGATCCCAGCAAGCACACAAGGCCATCCCTCAGAAGCTAACATTTCCCCCCCCCAAGCACACTGTCAAATAGCCCGGGGTGGCACTGTCAAGCCTTCCCAGATGCCAA-AGGGGAAAA-----------CAAATGGTAGCACCAGGCTGACCAGTTCATCGCTGAAGGGATCCAGGGAAGAGGGACCCTAGCCCAACCCCTCCCACTAGACCATCCCTATTCTGCTTCAAGGT---GGCACCTGCTGCCTGTAGCTCTCCTGAACCTCTGGTGCCTCCAGGTCCCGGCTCAGGCTCTCGGGGCTCGTCAGGGGCCGAGCTCCGGCTGCCTTAGCTGCCCGGCTCACAGCCTCTGAGAGAAGCAGCTGGGGGCCCTCACCCTGCATCGTCTGGGGGACAGGGGGTTGGGAGGGAAAAGAGGATCAACGTCAGATCCAGTGCC-ACCATCCGGCTCACCCTTTCCATGAGTCAACCACTCCACTGAGTCTCCATGCTAGTGGAGAGAGGGGAAATTAAGAGTCCAGGATGTGGTTTTTACAGCAGAAATGCCTTCCTAATTCTCTTTGGCACTAGCCAAAACTAAA-----GTGAATGTGCTTGAACGTGCTCTTCAAAAC--GAAAGGCAGAAGGGGTCAAGCCATCCGGGATTCAGAGCTAGGTAATCCACAAGAGGAAACCCACCTTAAAGGAAAATGGGATCTAAGCACATGGGGATTAGGCAGCTGAGCAACTAATACAGGACTGCTAGCAAACAGACTAAGGTCAAGTCCTGTATGGTTATGCAACAACCAAGAGCAAGTCTGAATCCCAGAAAAAGTTTCCTCATTAAACGAGGGGAGGGGAGACTGAATAACAAGAGCTCCCACCATCTCTACATAGTTTGATTCCAGGCATGACGGGGAAACCTGGACAGAGAGAGAGGCTTAGGGAAGAGGAAAACCAACCTTGCGTCTCTTGGCAGGCATACCACTGAGGTAGGCATCACTCAGAGGGGGCTGCGGTTTCACCTTCCGCTGGCTCTGAATGTCCTGCTGGATAATAGGGACCCATTCCTGGGGAGGAAAAGAGAAAATAGTAATGTCCTTGACTTTCAGCTG-CCATGACCCACTGGATTACTTCCTGACACTTACTGGGGGGACTGCAGCTGCCCAAGGTTCTGTCTCAGCTGAAGCTCCATCCTGTTCATCCCGGGA---------GCCCCCCTCAGGAGCAGGAGGTGGACCTCGGGACATGGCCTCTTCTGCTGTTGTTCCAGGGGCTGGGGAAGCATTCTCCCGCTGGGTGTCAGATGGCGGGAAGAGCCAGGCTTCAGAATTTTTAGCCTCCAAACCTTTCTCCCCCAGCCCTCCACTCCACATTATCTGGCCCCTCAACCTCCCCCTCTCTAGAGTACCTGAGGCTCAGGGGAAGCTCTTTCTGCTCCCTGAACTTCCATTGGCTCCTCAGGAAGTGGCTGTGAAATT-------------AAAGAACACCATACTTCCTCTCAGATCTCTCCAGTTCTCTCAAGTACCCTGACCCCATCGCCCAACAGGTCCCTTACCTGGGGGGGATCACCAACCCTGCGAACGTATCTGAGAATGGCATCAGGGCCTACAGGCATGTGCTCCAGTACCACCTGAAGCCTCAGTCCCATCATAGTGGTCAGCCAGCTCACCAAGGAGGGATTCACCCCACGAGACATACGACGCTGAGGGACAGAAAGCAGATTTAGAACACAAAACCCTCAACCACCTTTAGAAATAGATTAGATCCAGGTTACAGAATGTCAGTTTAGAAAAGA-AAAATGAAAACTGCAGAGAATGGAAACCTCAGGAAACAAAAGGCTAAGGATCTGGGGCTAGGTGGTGCTTACAATTCGGCCATTGATAACAGCAGCAAGCTCCATCTGCTGTCCCCCCAAGCAGTGCAGGTTTAGGGCCAGGCATTCAAACAGGCCTTGGTTACACAACTCCAGCAACCGGGCCCCAAATCCACTATCTGTGGGCAAAATACAAGGAGGGAATGCTGGCACGTGGCAGCCCTGCACATGCAACAGGCCCCACTTGCCCC---CGCCTGGCCAGCCCCTGACCTGTGCAATGCAGCACATGCGCAGCAATGCTATTAAACTGCTCTTGGAGAAATTCCAGGTTTGTCCGGATGATGTCCACACCTGGCTGAACCTGCACCAAGGACTGAGAGACAAGATAACACAAAGATCCCAAAATCAAGAATCAT--AAGACT-------------GGGAGTGGAGGA---GGCAGCTGCCTCGACCAGACCCAGGAGAGGAAAGGAATAGAGAAGGGTTACTCACAAAACTCTCCCGCACATACTCTTCTAGCCCCGTGATCAATGTGTGGGTTGCCATCTGTGGAGGAAACAGAACAGGTTTAGTTCAAAGCCTCAGTCCT--CC-------CAAGACTTCCACCTCGACCCCAACAAGTCCAGGGCTTGTGTGGGGGCAATTGGAGCTTTACCTGGCAGAGAAGCAGTCAGAAATAAGGAATAAAATGTGCAAAAGAGGAGAGTTCTGGGGCCCCTGGCCTTCATTTACCCGGATGTTACTGGGTGTGGGCTCCTGACCACCCAGGTAGTGCTGGTGGAAGAAGGATCGCAGCTGGGGCTGGAGCCGTTGTAGTGGCTGGAAATGCCCATGGAGAAGCATCACTACGTCCACCATAGAGAAGTTCTGGCACAGAAGAGAAAGCAAGGCCCCAAAGAATCCTGGGGGACAAGGGCAGATGTTAGCAATGGCCTTTACCACCTGGCCTGCCCACCCACAACCAGATCATCAACCTCATCCCACCTTGGCAACACCCCTAAACCAAGGCCATCTACATTCCTCTGGCTGCCCCTTCCTGGAGCAAGCCAAAGCATCCTTT-TTGCTCACCAAGGGCCCCATCAGCTCCAGGCTCAAAGATGTTGCTGGATCCACTGAGGCGTTGTATGAAGGCAGCAATACTTTCACTGCTGCCAGCCCGAGCCCCCAGGGAGCCCAGCAGGGAGCTGAGCACACCCTGCACCACTGAGGTAAAAAACTCCGGTGACAGGCTCTCAAGACCCAGGCCTCCAGGACTCCCTGCGCCACCAGAAGGGGAGCCTGGTGGGGGCATGGTCTGCTGCTCTGGGGCAGGTGGTGGGGGTGGAGGAGGTGGGGGTGGTGGAGGGGCTGTCTGTGTTGCCTGGCAAATAAAGAAAGAACAAAGAACAGAAAGTGAGGTGAGAATGAAGACACACGGAAATAATACGGCATCAAGAGGGCACAAACCAACGGGTCTGGGAAGAT-----GGGGAGTTACATTCTGATCTTCACTGCTTAAAGCAGAA-------GTATGGTAGGTATTTAACAGAGTCAGGCAGCACAACTTACCTACCTCTTCCTCTGAACAGGTT--GTCAGAAAGCAGTGACACTAATTACTATactttctttttctaaacctcattttcttcatctttaaaat---gaaaggt------tcagagtcaatgaattcctagggccccttcccct-aacatGTCACTAGGGGCTCTTACCCAGTGGTTATATAATGGCAAGAAGGTACCACTGCCTGGCTGGGCCGGGGGACAGGAAGATGAGGTGAATGGCAAGCCAGCCACTCACCTGCAAGAAGTCAGTCATGCCTTGGAGAAAGGCAGGGACACCAGGCATCGCCACAGTGATGGTGGGAGAAGCCACACCAGACCCTCCAGCCCCTGGCCCTGCAGGCCCTAGCAGGTTCCCCAGAAGCTGAGAGAACTGAAGATCAGCCATGGAGGGTTGAGGGGTGGGTGGAGGCTGGGCAGGCCCCCCAGGAGCGGGGCCAGCTGTGGTAGCTGTGTTGGTGGTGCCAGCACTGGCAGAAGCAGTGGCAGGGGCTGGCGGTGGAGCCATACCTGGGGTCCCCTGAGCTGTAAGAAACCAAAAAAAGAAAGCTGg s canFam2.chr12 4129873 4149 + 75515492 ACACAGCTGGGTTTCTAGGGACTATTTATTCATTTTAGACAACTTAGAGAAGACAAGTATTTAGATTACTTA----GGAAAACTCCGAGACAAAAGAGCCAGGAAAATCTGACTTTTATTCCTTAAATACTGTGAAGGAAGATGGGGGAAATGGTCCCCTGATGAGGGAGGGCCAAAGAGC----AAACAGCTAGGGATCATCAGTGAAGGCCCGGTGGGCATTAGGGAAGCGCTGGGGGCTGTAGTTGGGGTCTTCCTGCAGTCGCTTCTGTATATCAGCCCGGAGCTAGAGAGAGAGAACAAGCAGGTTGGAGGGGCACCGGCCAGGGCCCTAGGATCCCAGCAAGCACGCGAGGCCATCCCCTAGGAGCTAGCGCTT---CCCACCAGCCACGCTGTCAGA-AGCCGAATACGGCATCACTGAGCCTTCCCAGATGCCACTAGGGGAAAACTTCAAAATATCACATAGTAGCCCCAGACTGACCAGTTAGTCTCTGAAGAAAT-TAGAAAAGAGAGGCCCTAGCCCGACCCCTCCCACTACACCATCCCTATTCTGCTTCAAGGTGGGGGCACCTGCTGCCTGTAGCTCTCCTGAACCTCTGGTGCCTCCAGGTCCCGGCTCAGGCTCTCGGGGCTCGTCAGGGGCCGAGCTCCGGCTGCCTTAGCTGCCCGGCTCACGGCCTCTGAGAGAAGCAGCTGGGGGCCCTCACCCTGCATCGTCTGGGGGACAGGGGGTCGGGAGGGAAAAGAGGATCGACGTCAGATCCAGTGCCAACCACCCAGCTCACCCTTTCCAGGAGCCAA-----CCACTGAGTTTCTAAGCTAGTGGAGAGAAGGGAACT----AGTTCACGA-GTGGTTCTGCCGGCAAAAACACCTCCCTAATTTTATCTGGCTCTGACCAAAACACGACACTTGCGCAT---CCTGGACTCACTCTTCAATACCAGAAGGACAGGGTAAGTGGAGCCAT-CGGCACTCGGC------TAGTCAGTGAGAGGAAGCCGCCTGTGAGGAAGCAGGCCCTCGCCACACAGGGGAGTCAGGCTGTTGAGGGACGACCAC---ACTGCTGGC--ATATGCTAGCGTGAGGGTGTGC-------CGCAACCACCACGAGCAAATC-AAGTCCCAG-GAAGGTTTCCTCACCCCATAAGTGATAGGACAA--AAGTAGGAAGAAGTCCTTCCAGCTCTAACTAGTCTGATTCTAACCAC-CCGGGGGGAACTGGATGAATCGAGATCCTCAGGGAAGAGGCAGACCAACCTTGCGTCTCTTGGCAGGCATACCACTGAGGTAGGCATCGCTCAAGGGGGGCTGCGGCTTCACTTTCCGCTGGCTCTGAATGTCCTGCTGGATAATCGGGACCCACTCCTGTGGAGGGAAAGAGGACGAGGAGCTGGCGCC-ACGTCCAGCTATCCCTGGTGCTCCAGCTCTCCTCCCGACACTTACTGGGGGGACGGCAGCTGCCCAAGGCTCAGTCTCGGCTGCAGCTCCGTCCTGCTCTTCACGGGAGCCGCCGCCGCCGCCCTCAGGTGCAGGAGGAGGCCCTCGAGACATGGCCTCTTCTGCCGTTGTTCCTGGGGCCGGGGAGGCATTCTCCCGCTGCAAGTTGGA--GCGGGAAAACATGGGCTTCAGCATCCCCAGCCTCCAGCCCTTCCACCCTCAGCCCTCCCCGCCACCTTATCTGGCCCCTCAACCTCTCCCT------GGTACCTGAGGCTCAGGAGAAGTCCTCTCTGATCCCTGAACTTCCATCGGCTCCTCAGGAAGTGGCTAGGAAATTGGACAAAAAAGCAGAAGAGCACAAAAGGCCTTCTCAAGCCTCTCCCGTCCCTGCAAGTCCCCTGACCACACTGCCCATCCAGGCCCTTACCTGGGGTGGGTCGCCAACCCTGCGGACGTATCTGAGGATGGCATCGGGGCCCACAGGCATGTGCTCCAGAACCACCTGAAGCCTCAGCCCCATCATAGTGGTCAGCCAGCTCACCAGGGACGGGTTCACCCCACGAGACATGCGACGCTGAGGG-CAGAAAGCAGCCTTGGAACACAACACCTTCAACCAGCTTTTGAAAAGTATCAA----AAGGTAAAGGACAGCAATTTGGAGAAGGCAAAACAAGAACTGCA------GGACAGCAGAGAGAACA-------AAGGCCCGGGGGCTGCGCGGTGCTTACTATCCGGCCATTGATGACAGCAGCGAGTTCCATCTGCTGGCCCCCCAAGCAGTGCAGGTTGAGGGCCAGGCACTCAAACAGGCCCTGGTTACACAACTCCAACAAACGGGCCCCAAATCCACTATCTGTGGACAAGACAAGAGGTGGGGATGCTGGCAGCTGGCACCCC-------GCGCCTCGCACCCCCAGCCCTGTGCGCCTGGCCG--CCCTCACCTGTGCAGTGCAGCACATGAGCAGCAATGCTGTTGAACTGCTCCTGGAGAAACTCCAGGTTGGTCCGGATGATGTCCACACCAGGCTGAACCTGCACCAAAGACTGAAAACCAAGAC-ACACGGAGACCCCCAAATCAGGGAGCCTGGAAGACTACATTCGCTCCGAGGCGGTGGGAGGAACAGCAGCTACCCCGGCC--CCCCGGGAGATGAGGA---------------ACTCACGAAACTCTCCCGCACGTATTCTTCCAGCCCCGTGATCAATGTGTGGGTCGCCGTCTAAGGGCAAAACAG--CAGG---AGTTCAGATCCCCCACCCTGGCCTGTGAGACATGCCCTCCCCTCCACCTCCAGTAAGTGCAGGGCTCAGGCTGGAGCGATCGGCACTTTAGGTGACAGAGTGG-AGTCAAGAAAGAGAA---------GCTGAAGAGGAGCATGCGGCGGCCCCCGGCCTTCATTTACCCGTATGTTACCGGGTGTGGGCTCTTGGCCACCCAGGTAGTGCTGGTGGAAAAAGGACCGCAGCTGGGGCTGGAGCCGCTGCAGTGGCTGGAAATGGCCGTGAAGAAGCATCACCACGTCTACCATGGAAAAGTTCTGGCACAAAAGAGAAAGCAGGGCCCCGAAGAATCCT-AGGGACAGGGGCTGAAGTCAGCAGTGGCCTTTACCCCCTGCCCTGCCTGTGCACCACCAACCCATCGACCTCATCCAGCTCCAGCAACACTCCTTGACAAAGGTCATCAAc-ctcccctcccctcccctcccTGGAGAAGACCAAGGCACCCTCGATGGCTCACCGAGGGCCCCATCTGCCCCAGGCTCGAAGATGTTACTGGATCCGCTGAGGCGCTGGATGAAAGCAGCGATGCTCTCACTGCTGCCGGCCCGCGCCCCCAGGGAGCCCAGCAGGGAGTTCAGCACACCCTGCACCACAGATGTAAAAAACTCCGGTGAAAGGCTCTCAAGACCCAGGCCTCCAGGACTCCCTGTGCCACCAGAAGGGGACCCTGGTGGGGGCACAGTCTGCTGCTCCGGTGCTgggggcgggggcggcggcggcggcgggggtggaggGGCTGTCTGTGCTGCCTGGCAAAC----AGAGAACACACAACAGAAGACAAGGTGAAAACGGGGAC-------------GAGACACCAGAAAGGCACAGGCTGA-------GAGAAGCCCAACAGGAGAGCCCCACTGTGGTCTTTCCTCCCTGGAGCAGAATGAACACATGTGGTGACATAGCAGCAGACTTAGGTGG---GGCTCCAGCCCCTCTCCCCCTGAACGCATTAGGTTACAAAACAGCAATGCCAAGTACTATGTCCTCAT------AGCCTCAGCTGCTGCTTCTCCCAAATGGGGATAGGTGGGGAATCGGAATCAATGAGGTCCCAGGGCTCCCTCCCATCGACAGGCCACCAGGGACCGTAGCCCAGCAGCAACATCACAGAAACAAGGCACCAGCACCTGGCTGGACCAGCAGGTGTGGGGGGGAGCCAAAGAGCAAGCCAGCAACTCACCTGCAGAAAGTCAGTCATGCCCTGTAGAAAGGCGGGGACGCCGGGCATGGCCACGGTGATGGTGGGAGAAGCCATGCCAGGCCCGCCGGCCCCAGGCCCTGCTGGCCCCAGCAAGTTCCCCAGGAGCTGAGAGAACTGCAGGTCGGCGGCCGAGGGCTGAGG---GGGAGGAGGCTGGGCAGGCCCCCCGGGAGCAGGGCCAGCTGTGGTAGCGGTGTTGGTAGTGCCGGCACTAGCTGAAGCAGTGGCAGGGGCTGGAGGTGGAGCCATTCCTGGGGTCCCCTGAGCTG-GAGAGACCAAAAGAGAAAAGTTGA a score=11235 s hg19.chr6_ssto_hap7 2942337 270 + 4928567 TGAAGACACAAGACACTACAGCAGCCCCATTC------------CAGGAAAGCAGGAACCAAGAAAATATGGAAAGAACTGGAAAGTGCCAGTGAGCAGACTAGGAAA-----------GGAGT------------TTAAACTCTGAGTGGGGAAGAATGAAAACTCACCCACAAGGACTGGCTGCATAAGAAGCTGCCCCACAAGGCCGCTCACCATCTGGGCCAACGAGGCATTGGTACCCAGACCGGCGCCCTGCTGGATAGAGAGCAAGGGAGAACTTCAGACCTGCCCT-TCCATGCACCA s canFam2.chr12 4134028 304 + 75515492 TAGAGAAACGAGACACCACAGCA-TCTCATTCTGGTCTTGTCAACAGGAAGGCAAGGAAAAAGGATCTGTGGAGAAAACTGGGAAGCGCTCGTCAGGAGACTGAGGAGCACCGGCCTCCAGGGTGGTGGACATCCCTTCAGGTTGAGACGGGCAAGAACAAGGACTCACCCACCAGAACAGGCTGCATCAGGAGCTGCCCCACAAGGCCGCTCACCATCTGGGCCAGAGAAGCATTGGTACCTAGCCCGGAGCCCTGCTGGAGGGAGA-CAGAAACAGCTTTCAGTCCTGCCCTGCCCATTCCCCA a score=110240 s hg19.chr6_ssto_hap7 2942607 1950 + 4928567 CCAC-AGGAGTCTCTCCCTAGACTGTTACGCACTAGAACTCCCCGACCCTTGCTCACCAGTGTCCCAGAGACTGGGGGCCCTCCAGGATGGGAAGGCCGAGCCTGTGGAGGAGTGGGCCGGGCAATCACCACCCGGGTTGGAGCTGTTGGGAAGCCTGGCACCTGCTGTCCTGTGGGTGGCAGAAGAGACAGACCGAAGAGGGCTGAGGGCCAGGCCCTTGCCAGCCAG----------CTGCCACCATGGACTGTGCCCTACCTCCCAAGCCTCCCCTTCCAGGTCATTACCTGCGGCCGCGGAGGCAACAGCTGCCACCATGGCCTGATGAGTGATCTGGTGGGCGACGGCGTGCATGAACTCAGGGGGCAGGGAGGGCAGCTGGATGAGGGTGGAGCCTGGGGGGCGGGTCTGATGTAACCTTGAACCTGGA-CCCCTTCAACCCACCCACTCAGCCCTTCCCTTTCTCTACCCAGAGCTCAGCCTGCCCTGATGCCCTCACTCTTACCCAGGGTTTGGCCATGACCAGGGGGTCCCAGGGGGCCAGTGGGAGCACTCGGAACACCACCAGGCTGTGTGCCAGAATCTGGGCAGGGAGACAGAGACAGTGGCCCTGAGGTAGGTAGGGCCAAGGCCTAACTATATCCTTCTGAGATCAGGCATACTTCAGGCCCATAATCCCCCAATCAGAAAGCCTGCCTTTCCCTCCATCTAAACAGGGAGAGGTACTCCCTTCACCACACAAACACACCTCCAAAGACAAACCAACCCCCACACC---CCCCACATCTGTCTACTTAAGCTTCTGCTCTGGTCCCCAGGCTACCACCACCAGCATGTGCCTCTCCCTTCCCCACCCT-GTTCCCTCACACCTCAGCATGA----ACCTCCCTCATCATGCTGATCCTGCTCTTCTC-GCCAGCAACTATTC-----TCACCTTGAATGTTCATGTGCATCATGACCACGGGTTCCACACTCTGGTGGGAAATCCGGATGACCCTCGGGTGGCTGGTGGCTGGCGGGGGAGCTGGACCTGGCGGGGGAGCCCCCTCAGCTGAGGACTCGACATTGGTAGAAGACGGAGCCACGGATGAGGCCTGCCCAGGACCAGGGGGAGGTGCCTCTGCATTGGGAGTTGGGGGGGGCCGAGTCCCATTTCCTGTCATGGTCACAGTGGTTCCCACATTGATCTGAAAAAGACAGATGGACAGG-CAGATGTGAGAAAAATACAAGAGCCTAACCAAGAAAACCTCATGATAAACCTCTAAAGTATCTCCAGCCTTCATCAC--CATGTTTCC--AGTCTCCTCCTTTCCTAACCTCCTTCAGGCCCAGTAGCTACCCTGGGTCACTCTATCAACACCCCTCACTCTCCCTCAGGCCAGACTCCCCCTAACCCACCTGTATGGGAATGGCTGCCTGCTGGAGCACCATGGGGGTGGTGTAGTGAGACATAGGCCGGACCACATGCAGGTGTCGTGGGGGCGTGCAGGCCAGATTGCAGCGCAGGTCAGACAGTGCAACAAAGGTGTTGCCCAGCAGTCGCAGGCTCTCCCCTACCAAGTTGATCAACCGCTGATCCTCCTCCCGGCCCTCGTGCTGCGCACAACCA--GCCAAACACAAAAAGGCAGAAAATATCAAGCTGGAGTCCATCTCACTAATAAAAGCA-ATAATGCCTACTGAGAATACCATGTCCTCCA-----AAACTTTCAGTTATATCCTTGGAAGTTTACATGTAGACCAAATCTTTGCAAATAAATTATATCTTATTCACATAAGGAACATCCTATTAAAACA----CTACTATGAATCAGTAAGTCATCATATACTGATCTCCTGTACTTTACAT----TTTCTA---AATTCATTCAGGGGCACAAGGGGTACGATACGAGGACAGT--GCTTACAGCAAAGATTATCACCTTCTCTGTAAGGGAGGACA---AAATCACTTACAGGTTTAGAGAGAAACTGTTTTGTTGCAA s canFam2.chr12 4134601 1935 + 75515492 CCACGAGGATTCTTTCCCCAGACTCCCCCCAACGAGAGCTCCTCCATCCTTACTCACTAGAGTACCCGAGACGGGGGGCCCCCCAGGATGGGAAGGCCGAGCCTGTGGAGGGGTGGGCCGGGCAATCACCACCCGGGTCGGAGCCGTAGGGAAGCCTGGCACCTGCTGTCCTGTGGGTGGCAGAGGGG--AGACCGAAGAGGGCTGAGGGCCGGGCCCTGGCCTGCTAGCCGACAGCACCCGCCACCATGGACCGTGCCCCACCTCCCAAGCTTCCCCTTCCGGGTTATTACCTGCGGCCGCGGAGGCAACAGCTGCCACCATGGCCTGATGAGTGATCTGGTGGGCGACGGCGTGCATGAACTCAGGGGGCAGGGAGGGCAGCTGGATGAGGGTGGAGCCTGGGGGGCGGGTCTGATGTAACCTTGAACCTGGACCCCCTTCAACCCACCCAGTCGGCCCTACCCCTTCTCTACCCAGAGCTT-GCCTGCTCTGATACCCTCACTCTTACCCAGGGTCTGGCCATGACCAGGGGGTCCTAGGGGGCCAGTGGGAGCACTCGGAACTCCACCAGGCTGTGTGCCGGAATCTGAGCAGGGAGACAGAGAGAGTGGCCCTGAGGCAGGTGGCACCAAGGCTTAACCACATCCTCCTGTGACCA-GCATCCTGCTGGCCCCTACCGTCCCCATGAGAAAGCCCGCTTTTCCCTCCACCTAGAAGGGAGGAAGCACTCCCTTCGCCACGCAAACAAACCTGCAGGGACAAGCAGTCCCTCCTGCCCTTCCCAGCACATGTGCACTCAAGCTTCTGTCCTGGTTCCTCTGCT-----------------------CCATCCCCACCCTCGCTCTCTCACATCTCTGTGCCAACCCACCTCCCACATCGTG------CTGCTCTTCTCTACCGACAACCAACCCTCATTCACCTTGGATATTCATGTGCATCATGACCACGGGTTCCACGCTCTGGTGGGAAATTCGGATGACCCTCGGGTGACTGGTGGTTGGGGGGGGAGCTGGCCCTGGCGGGGGAGCCCCCTCGGTTGAAGACTCGACAGTGGTAGAAGTGGGAGCCAGGGACGAGGCCTGCCCAGGACCAGGGGGAGCTGCCTCCGCATTGGCAGTTGGGGGGGGCCGAGTCCCATTCCCCGTCATGGTCACAGTGGTTCCCACATTGATCTGGAAGAGACAGATACAGAAGTCAGAAATAAGTAAA--ACAAGAGGTTAACCCAGAGCATCCCGAGGTATACTGCTGCAGTCTCCCCGTTCTCCACCACTTTGTGTTTCCGAGGTCTCTACCCCTTCTCA----ATTCAAGCCTGACAGCTACTCTGGGTCAT----GCGCCATCCCT--------------CCAAGGCTCCCTGGACCCACCTGGATGGGAATGGCTGCTTGCTGAAGCACCATGGGGGTAGTGTAGTGAGACATGGGCCGGACCACATGCAGGTGTCGTGGGGGCGCACAGGCCAGATTGCAGCGCAGGTCAGACAGCGCCACGAAAGTGTTACCCAGCAGCCGCAGGCTCTCCCCCACTAAGTTGATCAAGCGCTGGTCCTCTTCTCGGCCCTCCTGCTGTA-ACCCCCAGGGCCGAGGACAAGAAAGCAAGACATATTAGGTTGCAATAAACCTTGACGACAAAAGCAGGTAACACCCTTGAAAAGCCCCATACTCTCTATCTCTATACCTTCAGCTATAGCCTTGGAAGGTTCCAGGTAGACC-GGTCTCGGCAAATAACTTCTATATCGAATACGCAGAAAGTTCCCTATTACAACAGGCCTTACAGAAAATCAGTACAGCATCATCTACTAATCTCCCTCACTCTACCTAAGCTTCCTGAGTAATTGAATCAAGGAATCAAGAG-------ACAGAAACAGTAGATTTAC-GCAAAGATCATCACCTTCCCTATACAAAAGAACACGTCATTTACTCACAAGTCTATAG---AACTGTTTTGTTGCAG a score=20071 s hg19.chr6_ssto_hap7 2944872 367 + 4928567 GCAATGTTTTTCCAGGGAGGGAAAGAGTTATCTGTATTTCAGCCTGTTCTGTTTTGGG-AGTACTGGGGCTGAGGAGAAAGGGCAGGGCCATCAAAGGGCTCACATTGTTATTGTAGTCCGTGGTGGCAGCAGCACCCAGAACCTCGTAGTAGCGCTGCAAGAAGGGCTGGAGGCGACTCTCCAGCCGCTGTAGCTCCTGGAGCACCTCGACATACTCCGCAGGGGAAGGATGGCTGTGGACAAACCCAAGGGGCAATGAGCCAAAGCCTTCCTCAGATTCCCACCCTCACAGTCAACAGGGACCACATGTGCCCTCTTTCTCCCTGGTCTCCCAGAGCCCTGGCCCAATCCTTCTCTGGACCAGCAG s canFam2.chr12 4136536 351 + 75515492 ACAGTATTTTTTT---GGAAGAAAGGGTTAGATGTATTTCTGCCTGTTCCATGTGGGACACAACTGGGGGTGAGGGGGTGGGT------------GGCACTCACGTTATTGTTGTAGTCCGTGGTGGCAGCAGTACCCAGAACCTCGTAGTAGCGCTGCAAGAAGGGCTGAAGGCGGCTCTCAAGCCGCTGTAGCTCCTGAAGCACTTCGACATACTCCGCAGGGGAAGGATGACTGTGGGCAACCCCAAGAGGCAGTGAGCCGAGGCCTTCCTTAGATCCCCAACCTCCAAGCTGACA--GACTACACCTGCCCTGTCCCCCTGCAGCCTCCCAGACCTCTGGCCCCATCCCTTCTAGCACTAGCAG a score=36748 s hg19.chr6_ssto_hap7 2945785 813 + 4928567 AGCTTCTATTCTTTACTCCCACCCATGAGAGGATAGGGAGAAGAAAATGAACTGCTCCCACCCTCCCCAC--CACAATCCTGCACCTACAATGGTGAAAGAC-TAATTCTAAGAAAGAGAGCAGGCCTTCGTGAACTCAGAG--GAGAATTCCGATCAGGCTCAGGAGATACCATTTGGATTTCCTT-GCCATAGGGAGAGCAGCAGTTCT-TCTCAGCTGCCTGTCCTAGCGTCATTTACCTATACCGAGAGAGCCCCTCCTCGCCCCTCAATGCTAACCCTTCAACTAAGACCTCCAAGTAATCCTTTCCCTCCCTTGCCATGGTTCATTTCCTTCTCCCCATACTTCACTTAGGATTCCCCAC----CCACTAAAGATTCCCTCCATCTCTCACTTGGGTGCATTTGTTTCCGGGGCAGGTGTTGGGCCCGCTGGGGCTGGGCC---AGGAGTGAGCTCCGGGTTCTGGGCTGGGGCACGCTCCTCCACTTCTTCTGCCTCCATGGGCTCCCGGGGAGGTGCTTCACTTTCAACTGGTTCTGATGTTTGAGAGCTCAAGGCTACTGGCTCCGGGGTCACAGCCGGTGGCTGCGGGGGCGGCTGACTGTGCTGCGGTTGGGGCCCTCCTCGACACTGAAGGTAGGGGAGAGTCAGGATACCAAAGGCAGGGTAAGACTGCTGCAGAGGATTACTCTACAGG-------AGACTGAACAGAGAAAGTATCCTAACTAGActccctgaaggcatggctctgcaattttatctccgactcgctagcaactagcataagactgacacaaattagatgcataataagcatctgtAAt s canFam2.chr12 4136887 799 + 75515492 AACACCTATCCTTCACCTGCACCCACGGGAAGACA---AGAAGAAAAATAATTGCGTCTGTCTTTCTTGCCGCACAATCCCATCCCTACGATGGCAAGAAACTTAACTCTCAGAAAGGAACATAATCTATGTGAACTCAGGGGAGAGAACCTTGATTGGGCTCAGGAAACAGCATCTGTATTTCCTCAGCCGAGAGAAGAGC-----TTCTGGCTCAACTGCCAGCCCCAACCTCATTCAGCTGGTCCGGAA----CTCTCTCTGCCCTGCCATGCTAACCCCAGAGGTAAGACTGTCCAGCAATTCTCTTC------TCCTATCATCCCCTTCCTGGTTCTCACACTTCACTTAGGACTCCCAACCACTCTCCCAGAGGGTCCCTCTGGTTCTCACTTGGGTGCATTTGTCTCTGGGGCAGGTGCTGGGCCCACTGGGGCTGGGCCAGAAGGGGTGAGTTCCGGGCTCTGGGCTGAGGCACGCTCCTCCACTTCTTCTGCCTCCATAGGCTCCCGAGGAGGCACTTCACTCTCAACTGCTTCTGATGTTTGAGAGCTCAAGGCTACCGGCTCCGAGGCCACAGCTGGTGTCTGGGGGGGCGGCTGACTATGCTGTGCTTGGGGTCCCCCTCGACACTGAAGT--GGAGAGATTCGGGATACCAGAGGAAGAG-GAGACTGCTGCA---GATTACT---CAGGTCAACACAGAACGAGTGGAGAAGGAACTCTAACTAGGCTCCCTGAAGGCAGGGCTTTGCACTGG----TCTGACTCCCTAGCAACCA-TGCAAAACTT---TTAACAAGACACATAATAAAAAGCTGTAAT a score=85975 s hg19.chr6_ssto_hap7 2946921 1478 + 4928567 AAATTTCTAACAAAGAGTAGAGATTGTGGTTTCCT-TTCCTCCACAAGTTG--------GTTTCCCAGCCT----CCACAAGTTAAGAGAGTAGAATC----------------------------------CTTTAATTGAAAAGAGATGCCATGAGACT--------AAGTCTGAAACAAACTCCCCAGATACCAGGCACCAAGAGGATTGGCAGAAATGAGAGAGCCTCACAAAGATACTTTTTCTGCCCAAAAGAATGAATACTGCAGAGA--AGACTAGATTATGAAGGCCAAACCCTGTGAATGTGGCCAGTGAAGCCCTAACTCCCAGGCTGAGAGAA-------AAGGGAGAGGGAGGGTGGAGAGAGACCCTAGCCAGCCTTGCCCACTTACCTCCATCCGGGATAGTAAGGTCTGTATATCCCTGATCATGTGCTGAGCCATCACCAGCCGTACCCGGGGCTCACTCTACAATGAGAGAAGGTTTATCAGGGTAGGTTACAGATGAAGCCATGAGTTCTACCACCTACTAAATCAGGTCCCAGCCATCTCTCAGCCAGGTCCACCCCACCTCCCAGCCTCCTTCTCCCAGATCCCCTTCCCTGACCCTCGGAGGCCCCTCAATACCTGAATCGGGGCCTGTTCCATGTTGATGTGAACATCCACAGCAGAGCCGTCACTCTGGGGAAAGGGTAAGGGAAGTTGTTCTGGGAGAAGCC-AACACTAAGGCCTCCACACCTCCAATTCATTCCCTGGAGCCCTACCTCCTTTTCTCCTTAAAGACTGAGACCAATAGCACACCACAGGGCCCCCTGAACCCAATCTAAAGATGGAAGCATCTATCTTATTAATTCCCTGGTGCTACCACAACCAAA-----GCTACCCACAAAAGCCCTCCCCTGTGGAACATAAGCTTACAGGAAGATTGAAGGTTCCAACCATGACATAGCTGTTGGCATTCCGGTCATGAACAGAGGCCCCAGGCCCCCGAGTACCAGGGGGGGATCCCCCACCATGAGTGGCTGAGGCAGACCCCGTCCCAGAAGATGCCCCAGAAGGGAGGTGAGTCTGAGGAGGAGCCCGTTCCACCAGGTGGATAACCTTTCCCCCAACATCTGCAGAAAA-----------ATAGACACACACCAAAACATAGTATGAACAGGTAAACCCATGGCCTCAGTTCATCCCTCCAGACAGTAGCCC---CAACCTCTGAACTGCCTCCCCAGCCCCCTTACTGTATTCCTGAAGCTTCTTATCATCTTGCAGAACTCGTCCCTGGTAAATGAGCCGTTGTTTTTCAGATGGGATGCTGACAGAGGCAGCAATGTGCTCCTTAAACTCTTTTACATTCATCTGAAAAGAAGAGGCATGCACAGGAATGG-AAAGAATGGAGGAAAGAGGAAGAACAAAGACAGACAACCGAGTTGTGGAGGTGAGGGGTAAAAACC-----ACCACAGAATCACTACCCGTTTGTCTTGACCGTGAGATCATTACTGTGCAAACCCTTAAACTAAAG-----TAACAGCTGTCAAAATACAGACAATAAAT s canFam2.chr12 4137692 1561 + 75515492 GGGTTACTAACAAAATAGAAGAATTATGGTTCCCTAAGCTTCCACAAGAAGAGTAAAAAATGTCACAAGCTACAATCACAACACAAACGAATGGAATTGGGCCATCTCAGCTCAAATATGCTAATTAAGAAACTATAATTGAGAAAAGATGCCATGAGAGTTATCTGACCAATGTGAAATAAACTTCCCAGATACCAGGCACCCAGAGGATTGGCAGGAACAAGATAGCCCAACAAAGATACTTTTTC-ACCCCAAAGAGTGAAGACTGAAGAGAAGAGACCAGATTAGGCAGGAAGAATCCAGCTGATATGGCCAGTCATGCCTTCGCCACCAGGTGGACACAAAACCATTAAGAAAGAATGAAGAAACGGACAGACCCTAGCCAGCCTTGCCCACTGACCTCCATCCGGGATAGTAAGGTTTGTATATCCCTGATCATGTGTTGAGCCATCACCAGCCGTACTCGGGGCTCACTCTACGGTAAAAGAAGTACAATCAGGGTACGTCTGAGATGAAGCCATGCACTCTACCACCCACTGAACCAGGGCCGAGTGGGCTCCTCACCAGGTCCATCCCATCTCATGGCCTCCTTCTCCCAGATCCCCTTCCCTGACCCTCCCAGGCCCGT-GATACCTGAATCGGGGCCTGTTCCATGTTGATGTGAACATCCACAGCAGAGCCGTCACTCTGGGAAAAGGGTAAGGGAAGTTGCTCTGGGAGAAGCCAAATACTAAGGCCCCCACACCTCCAACTCATTCTCTGGAGCCCCACC----CTTTTTCTCAAAGACTGAGGCC-GTATCAGACCGCAGGACCCTGGAAACCCAATCTAAAGACCAAGACACCTTTCTTATGAGCTCTCTGCTATTACCACAACCAAACCACCCCTCCCCACAAAAACTGTACTATGTGGAACACAAGCTTACAGGAAGGTTAAAGGTTCCAACCATGACATAGCTGTTGGCATTCCGGTCATGAACAGAGGCCCCAGGCCCCCGAGTACCAGGCGGGGGTCCTCCACCATGGGTGGCTGAGGCAGATCCTATCCCAGAAGATGCCCCAGAAGGGAGCGGAGTCTGAGGAGGAGCCCGTTCCACCAGGTGAATAACCTTTCCCCCAACATCTGCAGGAAAAacacacacacacacacacacacCAAAGCATTATATAATCAGGTAAGCCCAATGCCTCAATTCATCTCTCTAGACAGCTGCCTCAACAACCTCTGAACTGCCTCCCCCAAACTCTTACTGTATTCCTGGAGCTTCTTATCATCCTGCAGAACTCGTCCCTGATAAATGAGCCGTTGTTTCTCAGAGGGAATACTAACAGAGGCAGCAATGTGCTCTTTAAACTCCTTTACATTCATCTACAAGGAAAAAG-AGACAAAAAACTAGCAGCGATTGGAGGAGAGAAGTACG--GAAGGGGAACAAGTGACTTTTGGGAGTGAGGGGTAAAAACCACTCAACCATAAAACCGCTACCCATTTGTCTTGACTGTGAGGTAATTATTATGCAAAGCCCCAAACTAAGACATTTTAACACCTGTCAAA--AAAGACAATAAAC a score=5458 s hg19.chr6_ssto_hap7 2948701 267 + 4928567 CTTAATGAAGCTCAGGTTATAGATCCAGGAAAAATAACACGGATGAAAAACAAAAAAAAACCACATGGACATTATATTATCTGTCTGGCATCCAAGGGAGTATGTGTCTAGAGACATCAGTGACCCCTTTCCAAACACAAGATGATACCAGTTTATTTACCAGACTCTCCTGTGATTTCCAAGATTAA-AAAATGGCAAAGAAGATGGGGTCTGGTATCAGGTTACTGAAGAAAGACTAAGAAGATAAGAAAGCAAAAAAGGTCCCAg s canFam2.chr12 4139253 235 + 75515492 ATTAACAAAGTTCAGATTATGTGCCCAGAGAAAAATATGTGGCTGAGAAACAGAAATA---CTGAGTGACATATCCTTCTCT-CCCCGCTCCCAAAAGA--ATGTGTCTACAGATACCAATGACCCCTCCCCAAACACAAAATGCTACAACT-----------------CTGCAATCTCAAAGACAAATGCAATGATAAGGAAGCGGGAGTAGAAAATCAAG-----AAAGGAAGGTTCAACAGAGCAGAAAGAAAAGAG-----CAA a score=10607 s hg19.chr6_ssto_hap7 2949276 290 + 4928567 TATTTTTCCTAACTACAA-ACTGACTCTTGGGAAGTACCAGAGTATTTATATACATCTAATCACAAGTCTATATATGGCTTTCT-TATATCCAGGTAATATCACATTTTAGAAAACCATGG-ACCACCCCACATGCAATTTGTCTCCAAGTATTACAGGAG-TAAAGACACAGATAGCTATGTCCAAGGCTTTAAGCTCAAGAGACTCAAGCTATGCCATAAAAATTAGTAATTTCACTCAACAGTCTATCAAGGACCTATCTCCATTATGGGTTCTGATTTCTACCCTTTAAA s canFam2.chr12 4139488 273 + 75515492 ACACTTTCCTAACTGTAGTAGTGATTCTTGGGAAGCACCAG----TTTACATACATCTAATCACAAGGACCTATATGATTTTTTCTATAT--------------GTTTTA-AAAGCTACGGAACAACCCCTCATG-ATTTTGTCTCAAAATATCACAGGAATTAATGGCATA-ACAGCCATGTCTGTGGCGCTAAAAACAAAAGATTCAAATTATGCCACACACACTAGTGATTCCGCTCAGCAGTGTGTTAGAGTTCTACCTGCATTATAGGCTCTGACTTCTAGCCTTTAAA a score=11924 s hg19.chr6_ssto_hap7 2949566 273 + 4928567 AACACAGCATAGACCTGACCAATGTCTATCAGTAAGACACACTT--GCTTAGGGTTCCTGTGCTGTTTCCCTTCCCAAAGGCCAGAGCCATGCCTGTCCCTTTGGGTTGGGGTCCACCCATGATGATGACACACAGATTCTTCCTTCCTCTGTATTTCCCTCTGCATTAAGTTCTATCCATGTGG---AGGACAGAACAAAATCAGCCTCACTC-ACA--------------------------AAACATCAGAAAACGTTCTA-CTGGAATACGAACAAAGGGATCAATAAAAAGAAAATCTGAg s canFam2.chr12 4139962 292 + 75515492 GACATAAAACAGACCTGACCAATTTTTA----------AGACTTGAGTTTTGGATCTCTGTTCTGTTTCCCTTCCCAAAGGCAGGAGCCATGTCTGTCCTCTTGGGCTGGGGTTCACTCATGATGCTGGCATACG---TATTTCTCCCTCCGTATTTTCCTCTGCACTGAATTCTTTCAAGGTGGGAAAAGGCAGAACAAAATCTGCCTCATTCGACAGAATCCATACCTTCTCCCTCAACAACAAACACCAGAAAACGTCCTATCTAGAACGTGAACAAAGGAACCAAT-GAAGTAAGATTTAAG a score=92638 s hg19.chr6_ssto_hap7 2950139 2119 + 4928567 GACCAGAAAATCAAGCTCATCTCTCAGGCTAAGGGGCCTAAACGAGGAAAAGCTAA-AGGTGTCTTCCAGAACTAGTGAGGTGTCTCACCTGGGCCCCCACAATAAAGGTACGAGTTTGAGAGTCCAAGGTCTTCACCAACACCTCCAAGCTGTCAGGCTCCTCCAC------AGCGGTACTGGTACTATCATTAGGCTCCATGGCCGACAGGTCTCTAAAGAAGAACGAAGGAAGGAGGGCCCGCTGTTGCCCAGACCAGA----GTGTACCCGAAAGACTCCCTAGCATTAATCCCTGCCCCAATACCTAAAAAGTTTCTCCTGCAC--ACACACACATTCACACCTGTCCCCATCCCCCTTCTGATTCCGGGGCACAGGGAGAGAAACACAAAGGGCAGGAGATCGACGGCTTAGGGAGCTGGAGGACGAG-AGGTGGGAGGGGCTCCACGACGCCAATCACAATAAGCAGGGAGCCAGTCAGATTAGGAAG-----GAAGCACGAGACCAGAGACTAGTGTCATCACCGGTCACGGCAGGACAAGCGCCCCAGAGGTCGG-AAAATCCTGGGACAACGCGAAAGCGGTG----------GTCGCCCCACACTCTGCGGAGAAAGTGGTTTCGCGCACGCG-----CGCCACGCCCATCGAACCCTCCTAACTCACTATAGACCCGAAAC----GGCACTCACGGGGCGACGGACCTGCTAGCTGACTGCCCGCGTCTACTGCCTTCCCACGGTGTTCCAGCAGAACGGCACAACTAACCCACAGCCAAacacacacacacacacacacacacacacacacacacccacccac-ccacCACCCCGCGGCTCCGCCCCCGACTTCCCCACGG-ACCGTCACTTCCGGTCTCCCCCAAACCTGCCACCGACGGCCACTTCCGTTTCCCCGATAGTATTTGGGGATCTCGAAGCGATACTTCCGGCTCCCCCCAGGTCCCCAAGCTTTACTTTTGTGGGGCACGACGAGAAAGTCCGCAGCCCCAAACAGTGAGTTTCTGAGGGCGAGTCGGGCCGGGGCCGGCCTAGGTGGGAGGGAGCCGAGCACCCCGAGGAGCCGCCACCGCTGTCGCCCGGGGGACCGTACTACGCCTGCGTGCGTCGCACTACGGATGCGTGGACACTTAAGCATCGCCCCACCCCCTCCCCCTCTGGCGGCGTTCACGTCTGTGCGCGCGCTTGAGCGCTAGAAGATTGAGGTGGCTACCGTAAATGCCTGAAAAACAGTCACCAGCTGGGACTCTACCACTGCCTCGAGAGGGGCTATGGACGGTCGTATGGACCTTGGACTTTGGAGATGGGGGATTATGCCACATTCATCTATGTTTAAATCTTGGCAGGCTGATAATTTCAGGCGGCACTGTCCTAGCCAGCTAAAACTCTTCTCCACCCTATTGCCCTCGCTGCGCCCTTTCTTCTGTGCCTCCGGAAGTTACTCTTTCAGTAGGCGTTTGGGGGCGG--CACTGGTCAATTTTGTTCTCGGTTGCTTGGTTGGGCTAGATTTCGGTTCTGCCGGGTGGGCGTTTTAAGGGCTGTGGGCGTCACATTCGTCGGT------GTGTGGCCAAGGGGACATGACACGTTTTAGGAAAAGTAAACGTGCTACTAAGTTGCACGACTTGTCAAGAAAAGAGGCGCTTCCGAGTTTGAGAATTGGGAGCAAATGGAGTCCGAGTGGACAGAAAGACAAGACCCTGACCGTGGGGAATTTAAAGGCCGGCCAGCGTGCTTCCGAAGGCCGGG-------GGTGGA---GGCATTACCGCCTCTCCGTGCCCTCTTCTCTTAACCTGCCCTGGGCCAAGGGCCTCGGCCCCGCGAAA--CTGCGAGTCCTCCAGAAAGACACATCGCTGTTGGGGTGTCCAACCTTTCTGGGATTCGTAGTTTATACCCAGGTCCTGGTTATATTTTAGTTAAGAGTTCTAATAAGCAGCTGTTTAATGAGCAC-----TTGTGCCAGCCCATATACTACGGGTTTTGTGTATTATT---TTAAAAAGCCTTTTAAC----GAGCTTTTAA-------CATTTTTTAAGTGAGTACACTTAGACGAACATAAGTGTCAGAATTGACAAATCCAGGCCTACAGGACTCCAGATCGAGCACTTGTACTTTACTGCCCCAATAAAAAGCTGT-TAACAt s canFam2.chr12 4140254 2082 + 75515492 GACCAAAGAAATTCGGT--TCTCTCAGGATAACAGACCTACAACAGAAAGAGTTAATGGGTGTCTTCCAAAAGTACTGGG--GTCTCACCTGGGCCCCCACAATAAATGTCCGAGTCTGAGAGTCCAAGGTCTTCACCAGCACCTCCAGGCTGTCAGGCTCCTCCATACTGGAAGTGGTACTGGTACTATCAGTGGGCTCCATCGCAGATAGATCTCTAAAGAATA---GAGGGAGGGAAGCCTCCTGTCGCCCAGAGCTGATTTTATATACCCGGAAGCCTCACCGGCTTGAGTCTCCGCCCTAATATCTGAAGAGTTTTTCCCGCACGAGCCTACACACTCACACCCGCCCCCATTCCCCTTCTGATTCCGAGGCACCAGGAGAGAAACACAAAGGGCAGGAGATCGACGGCACAGGGAGCTGGAGGACGGGCAGGTGGGAGGGGCTCCGCAATGCCAATCACAGTAAG-GGAGGGCCAGTCAGGCTGGGAAGCCGGCAAAGTAGGAAGCAGGAGACTCGTGTCATCACCAGTCGCGATACGACAAAGGCCCCAAAGGTCGGCAAACCCCCGGGAGCACACGCGAGCGGGGGGAGGGGGGAGTCGCGCCAGATTTTGCGGAGACAGTGGTTTCGCGCACGCGCGCCACGCCACGCCCACCGAACCCGCCTAAATCACGACAGACCCGAAATGACGGACACGCACGGGGGGCCAGATTGGCTAGCTGACTGCCCCCCTCTTCCGCCTTCCCTCGATGCTCCAGGAGAGCGGCGCAATCAAC----------ACACAC-CACACACACGCACAAAC-----CCCACCGCAACCCACACCACCACCCCG-GGCTCCGCCCCCGACTTCCCCACGGTACCGTCACTTCCGGTCTCCCCC-AACTTGCCACCGATGGTCACTTCCGTTTCCCCGATAGTATTTGGGGATCGCAAGGCGGTACTTCCGGCTCCCCCCAGGTCCCGAAGTTTTACTTTTGTTGGGAACGATGAGGAAGTTCGCGGCCCCAAACAGTGAGTTCCTTGGGGCCAGACGGGCCGGGGCCGGCCTGGATGGGAGGGAGCCGAACACCCCGAGGAGCCACCGCCACCGTCGCCCGGGGGGCCGTCCTGCGCCTGCGCGCGTCGCACTACGCATGCGTACACCTTTAGGCACCGCCCAA------CCCCCGCTAACGCTGTTCTTGTCTGTGTACGGGCTTGAGCTGTAGGTGGTTGAGGTGGCTACTTTAAATGCCTG-AAAATAATTACCAGGTGAAAGACTA----TGTTTCAAGA--GGCTTGGGACAGTTGTGTGCCTCTAGCGGTTTGGCGACTGGGGATTATGCCTCGTGAATCTCTGTTAAAGTCTTGGCCGGCCGAGAATTTGAGGCGGCACTGCGCTGGCCTCCTAAAATT-----------------------------CTGTCTTCGGCGCCTCCGGAAGTCCTCCTTTCTCTAGGCG-TTGGAGGTGGTTCGCGAGCAGCCGGGGCGTGCCGCCGCGTGGTTGCGGCCGACCTCGGCGCTGCGTGGTGGGCGTTTGGCTGGACGCGGGCGCCATGTTCCTCGGTGGCAGCGTGCGGCC-GGTGGACACGCCATGTTGTGGAGCAACTACGGATTC-ACTGCTTCACAGGACTCTCCTCAGAAAG-GGCGCCTCCGAGTTTGGGAATTGGAAGGGAGTGGAGTTGGACTGGGCCGAAACACAGGATTCCGGCCCTGGAGCACTGAAGGGGCCACCGAAGGGCTTCCGCAGGCCGGGGTCCCCCGGCGGACTGGGCAGTG----CTCACCG---------------------CCTGAGCCCCCAACCTCGGCCTCGGGTAGGCCTGCCTGCCTCCC----------------TTCCGGGCCCACGGCCTTTGTGGGGCCTGTCGTTCCTACTCGATTCCCAGTACTGATTCA--TAAGAGCCCtaataaataattgtttagcgagcacttggtttgtaacag-gaatatactcagggctttgcgtactgtcctgtttaaaagcctttcaataccggagatggtcattacatccattttataggtgagtacacttaggcAAAACTAA--GGCAGAACCGACAAACCCCGGCCTACCAGCCCCCGGGTCAAGCACGTCTACTTTACTGCCCCAATAAACTACTGTATTTTAT a score=1223 s hg19.chr6_ssto_hap7 2952525 27 + 4928567 ACATTTTAGCTTTTTATTACAAAAATT s canFam2.chr12 4142336 27 + 75515492 ATATATTTGCTTCTTACTATAAGAAAT a score=2423 s hg19.chr6_ssto_hap7 2952839 126 + 4928567 TTCAAACATTACACCAAAATAGAACA--------------------------GTATTAATAAACTCTAATATACTGGTCACCCAAATTTTGTTTGTTTTTTAACTAAATCGCAAGCCT----CAGCCCTT---------GGCAAATTTTTTGTGGCAGTCCATGG s canFam2.chr12 4142363 153 + 75515492 GGTAAACATTAAACAACAAAAAAAAAAGAAATGGCAAACATTACTCCCAGATGTTATAATGAGCCCTCATATACCCGTTACCCAAATTT------TCTTTTAACTAAATCACAATCCCATAACAAACCCTACCACTCAGAACAAAT------TGGCAGTCTGTGG a score=12210 s hg19.chr6_ssto_hap7 2953227 268 + 4928567 ATAATCTATCGAGGAAGATCCATCTCTCACAGCATTAACTGCTCCAGTCACTTGGTGCTATCCAAGGACAACCTATTTGGCAATTCTTACTGCCTATTATTTGAGAACTTATTACCCACCAGAAACTAAGTG-CTTTGCAAACATTACTATTAATtatagcaaatatatactttggactt-accatgtgcaagtctttgctaagggctttatgtgcattatttcatttaatcctataagattgatgatttgccaattttacagatgaaaa s canFam2.chr12 4142523 260 + 75515492 ATAATCTATT-AGGAAGCCCCATCTTTCATTGCATTAACTGCCCCACCCCCTTGGCACTATCAAATGACTGCTT-CTTGACAACTATT--TTCTTGCTATTTGAGAACCTGGAGCCCACCAGAAACTAAGTGCCTTTACAAAC------ATTaattatagcaaatacttccttcggatttaacaacaggcaggcccttgccaagggctttatgtgcataatctcgtttaatcctgtgagattgacgatttggtcatcaatgaaatgaaaa a score=82470 s hg19.chr6_ssto_hap7 2953814 1626 + 4928567 tgtagttagggtttggacacattctgcctgac-accaacatctatcctctctaacagccagattacatagcctctttgTAGTAATAAATGTTGAGTGAATGTGTCAGTGAACACTGCC--AGGGTATACATA---TTTTTCTAATTGTAAACTAAAGAGAG----CAAtccaccgtgccccagcacctgcatcatacctgttctaaagcatttaccaagt--tgtattgcaatgg-----tttgtctacacagctagttttccctctaacgacttcttcaagatcaggggctatgtcttattcgtttttttatgtcccc-ggggattagctagttcttgggaaacaactgggacttgggattcaaaacagtttgctaagtgaatgaatGAGAGGCCCAGTCAAGCTACTTCCCTTCAGTGCTGCACAGTGCAACAAATAACCAGCTCAGATACAGGTTCAAAGACCACAGGCTTCTCCCTGGACAGCTCAGCTCTCCTCATAACTCCTGAGAAACCCTGGACATGCCAGGGTGTACTATGGAGTGGTTGCATCCGGAAGAGGGGGAGGAAGTCCCAAACAC--TAAGTAATCCAGGTTTGGGTTGGAAAACAAGGTTGAAGTTACTCATTAGCAGGTGAAAGGGTCAAGGGTCGAACGCAAGGGAGCTGAAAGCAGAGTGGACTGAGCAGCCAGTA---GGGGAGAGAGCAGTTAAGG------------CACACAGAGCACCAGCTCCCTCCTGCCTGAAGATGTTCCACCAAATTTGGGCAGCTCTGCTCTACTTCTATGGTATTATCCTTAACTCCATCTACCAGTGCCCTGAGCACAGTCAACTGACAACTCTGGGCGTGGATGGGAAGGAGGTATGGACTGAGATTGGGGGAAGCCTATGGTGGAGGCTCTGAGGGACTTGGGTGGATGGCCTAGGATGACTGGAGACCATCTTGGGAAAGGAAGAGAGGAAGGGGGTGTGAGTGTTGTGATAATGAAAGCAAG-----------------AAGAAAAATATCAGTACTGTGGCCATCAATGCAGAGGCATGGCAGAATTGGGGGGTGGGGTGGTTACCCAGGTTGACTGGGGAGGGGCAAAGAGGAAAAGTCATTTAATGACTCTTTGTCATGGATCCAATCCCCAGTTGGAAAGAGGAAGGCAGC--CAACACCTCTACCCCTAAATCTTGCTGTTTTG-----ACTGATGAAGAGGTTGAACCCATCCTGTGCT-GGAACCCACCCTCTTTTGCTCCCTTCATTGTCTCTCCAGTTCCCAGAGGTCCACTTGGGCCAGTGGTACTTTATCGCAGGGGCAGCTCCCACCAAGGAGGAGTTGGCAACTTTTGACCCTGTGGACAACATTGTCTTCAATATGGCTGCTGGCTCTGCCCCGATGCAGCTCCACCTTCGTGCTACCATCCGCATGTGAGTGGTAAGGAGGCAGAAGCATCACTGGGTTCAGTCTCTGCCCAAAGTGTGAGAATCCACCCACCAAGAGCTGGCCTCTTAGCTGGTATATCTACTATGCTTGGCCCACGGAATTCAGTGGCTGTATTAATTGCCCTCTGGAGAAAGATGTGCCTAACCAA----TGCTTGGTAGCTTGAAACCCAAGGAGAGCTGGGCTTCAATAACAAATACAATGGAGTAAATAGAAGCCGGGACAg s canFam2.chr12 4142841 1600 + 75515492 tggagttagggtttgcacccactctgcctaataaccaatatct------tctaacccttacatcatgtattctcttc-tAATGATAAACATTAAGTG--------AGTGAACTTTTCTCAGGGGTGTACATACTGTTTCCCCAATTACTTCAGAAAGAAGGCCTCCCATCCACTAGGCCCCAGCAcctggttcatacctgttttaaagaacttaccaggctgtgtactgcaatgatttgttttgtttactcagctatttttctttttactg---ctctcaaggccagggactg----tcattca--tttttatgtccctaggggcttagc-------tggcacacagctgggcc-------tcacaacagtctgctaagtgaatcaatGAAAGAATCAGT----CTGCCTCTTTTCAGTGCTATACAACTGAGCAGATATCCAGCTCGGATACAGGTTGAAGGGCCACAGGCTTCTACCTGGAGGGCTCAGCTCCCAT--TAATTCATAAGAGACTCTGGACATGCCAGGGTGTATTATGGAGTGATGGCATTTAGAAGAGGGGGAGGAAGGCCTGAACACTGTAAGTAATCTATGATTGGGTTGGAAAACAAGGTTGAAGTTACTCATTAGCAGGTGAAAGGGTCAAGGGTC-AAGGCAAGGGGGCTGGAAGCAGAGTGGACTAAGTAACAAGGGGGTGGGGGGAGAGCAGTTAAGGCACCAGCCACTTCACGAAGAGCACCAGCTCCCTGCTACCTGAAGATGTTCCACCAAGTATGGGCAGCTCTGCTCTATCTCTTTGGTATTCTCCTTAACTCCATCTACCAGTGCCCTGAGTACAGTCAACTGACAACTCAGGGAGTGGATGGGAAAGAGGTATGGACTGAGAATGGGGAAAGCTGATGGTGGGAGCTCTGAGGGACTTGAGTGGGTGGCCTTGGATGACCAGAAGCCATGCTGGGAACGAAAGGGAGAAA--GGCTGTGAGTATCGTGATAATGAATGCAAGAACAAGTGGAAAAAAAAAAAAAAAAACACAGTACTGTGGCCATCAATGTGGAAACACGGTAGAATTGGGGGCT-GGGTGGTTACTCAGGTTGATT-GAGAGGGCTAAAAAGGAAAAATTGCTTAATGACTCCATGTCAT--AACCCACCCCTAGTCAGAAC----AAAGCAGCTGCCACGCCACT-CCTCTAAGTCTTGCTGTCTTAAGAGTAAAGATGAAGAGGTTGAATGGGCCCTGTGGTGGGGACCCACCCTCTTCTGATCCCCTCAT--TCTCTGCAGTTCCCAGAGCCACACCTGGGCAGGTGGTACTTCATCGCAGGGGCAGCTCCCACCAAGGAGGAGTTGGTGACTTTTGACCCTGTAGACAACATTGTCTTcagcatggctacaggctctgcccccatgcagctccagcttcgtgctaccatccgcatgtgagtgat---gaggcaggggcaccaggaggtgcagtctctgcccaaaatATGAGCACCCACCCACCAAGAGCTAGGCTCTT---TGGGATATCCACTGTTTTTGGCCCACTAAGTTCAACAATTCTGTTAGTTTCCCTCTGAAAAGAGATGAGCCTACCCAACCATCCCTTGGTAGTTTGAAA----------------CTTCAGAGAGAAATAAGATGGGATAAATAG----------AG a score=217291 s hg19.chr6_ssto_hap7 2955737 4262 + 4928567 GCTGGGACACTATGGTTGGGGTGATGCTCATTCTTTCCTCCTTGCCACCACCACCTCTGCAGGAAAGATGGGCTCTGTGTGCCCCGGAAATGGATCTACCACCTGACTGAAGGGAGCACAGATCTCAGAACTGAAGGTTGGTTCTTCCCAGCCCTCACCC--------TCCCTTGA----GTTTGGTTCTGCATCTCTGTTCTCATACTTCTCCCACCTGCCTTGACAGGCCGCCCTGACATGAAGACTGAGCTCTTTTCCAGCTCATGCCCAGGTGGAATCATGCTGAATGAGACAGGCCAGGGTTACCAGCGCTTTCTCCTCTACAGTGAGTAGGGATACAAGGCAGGAAGGGTTGGAGGGAAACAAGGGAGGGCAGGAGAACTCCTCACTCTGGGTCCTATGACACCCTCCCAGGAAGAGCTAGGTGCTTCCA-------------------------GGGGTTTTGACTGGCCTGACCCCACCTTGCCCTTCCAGATCGCTCACCACATCCTCCCGAAAAGTGTGTGGAGGAATTCAAGTCCCTGACTTCCTGCCTGGACTCCAAAGCCTTCTTATTGACTCCTAGGAATCAAGGTAAGGGGTTAAAATCTCATAAAACAGGATTAGGACTCACCAAGTCTTCTGGTGTTACAGGGTGAAAGAGGCTCGTGTGATGTCACCAGAGGG-----------------------ATGTGGCTAAG-----------------------AGCTGTGATGTCACCTGAGGGAGGCAGGATGGGTTCTGGGCTACTCAAAAGAGAGGTTTCTGAGTTTGCACTGGATAAA--GGGGGCAGAGGGTCATACGTGGAGGGAAAAGAGCCTTAGAGACTCC-CCTTTGACACAGGGAAT-GAAAGAACACGTTCTCCCCCACCCCATTACTATCAACTTTGCTTTTCTCCCTGGACTTCCCTTCTGTCC-------TTCTTTTTCCCTCCCCCCATCACAGAGGCCTGTGAGCTGTCCAATAACTGACCTGTAACTTCATCTAAGTCCCCAGATGGGTACAATGGGAGCTG-AGTTGT-----TGGAGGGAGAAGCTGGAGACTTCCAGCTCCAGCTCCCACTCAAGA-TAATAAAGATAATTTTTCAATCCTCATCTCATTCTGGGGTTTGTCTCCAGACGTCATTCCCACTC-CTCCCATTTCAACATTCCCCCTGGATCCTCTACCACCTAAACTCCCAGCTGGACGGTGTCAGTAA---GAACAGAGTGGCAGTAACTCTCACTTTGTAGTGGTATATTTAGGATTTGATGTGACACAGTTATTTATTGCTGAGTGAGCAAACCCCTAGCCCCCAAGTGGGGACTACAGGCTTCAGTGCTTCCCCCACACTGC----CTGAGCTACCAGCCCTTCTGCACTGGCCCTCCTGCCAATACTGCCTGCACTGTCCCCACTCCCTCTGGCTCCCATGATCA-CCAGATCCGCCCTGCAGGCTCCCTGTCACCTGTGGGGCCCTATCCAGACCCCCTAATCCACTTGCCTAGCAGCCCCACTCTTCCCTCGATGGCTCAGATCCTGAGATCCAAGGAACACCCTGGGTTTCCCAACCACTCTCTTACT----GCAGAGGTCTGTCTATCCTGC-CCTGGTCTCCTCCACCCCAGGAGAGTTTTCAAAGGTAGAGAGGACCCTTTGGTCTTTATTCACCACCATCATACTTTTTTTTTTTTTTGCTTTTAAAAAGTGGAGGTGGAAAAAAAAAAAAAACTGAAGGTGGGAGAAAAGTAAAAGCAAA----AATAACAGCTGGTGAATCCAAGAGCAGTGCCCTCACTGTCCATAAACACAAACACCCTAAATAGTTCTGTTCTCTCCTGTGTATGAAGGGGGGCCCTGCACCCTCGTACTC--GGGTTTCTTCCCCATCCCTGAGGTCCCTATGCTTACAATTTGGGTCATGCCTCACACTTTTCTCCTAAAGCCCACACTCTCTTCACCCTTTGC----------------------CCCCACCCCACGGTCACAGCCCCTTTCCCGGGTCTCCCCTCTGCTCCTCACCTTCCCTCTCCAACCCCTCACTCTCCCAGTCAGTGGCCGCCTCATCCCCATTGGGCTCCCGGAGGCTGACAGCCAGCACCAAGGCCTGCAGGAGACCAAAGAGGCAGGCGAAGTGCAAAGGGTGGGCAGTAAGTAGGCTCAGAACAGCATGGAGCCCATGCAGGGCAGCCAGGAAGGACAGTAGGCCATGTAGCCAGAGGCCCAGCGGTCCACGCAGGCCCAGTGTGTCCAAGGCTGCCCGCAGTGGTCGTGAGCACAGGGCCAGCAGGGCAGAGGCCAGCAGCTCCAGAAGATGCAGGGTCAGGTTGGTGGAGATCTGCAGACACTCTTCTGGGCCCCCCAAGTACCGGGAGGGAGCT------------CCTGGTTCCCCCCGCAGCCAGCCCAACAGCTTCTCACGCCTACCAGGTTTCTCCAATGGGGCTCCTGGCCCAGGGACGCTCAGTCCCCCTTCAGGGGACACCCCTGGTCTCCTGGTGCCACCTGAATCCACATGATCCCATCTGAGTTTGGGACTGGCCCCTCCAGCCTCCAGTCTCCCAGACTCTTGAGTGCTAGAGATAGGCTGGTCCCACTTGAGGGAATCCATTCTTTTGCTCCCTAGCTGCTCAACTTGGGGCTCCTCCTTGCTTGGTTCGGAAGCAGCCCTAGAAACCCTCAATGCCCCCGAGTCCTTAGTCTTGGGATGCCCCACATCTTCCATGGTTTCTGGGGCACTATCCCAGTCACTTCCTGAATTCTCCGAGGAGCTGTCCACCCGTCTGGGTTCTGGGTAAGGCGGGTCAGGCCTCATTGGTTTCCGGCGGCCCCAAGGGCGAGGTAGCCAGCCACCAAGCCGTCGCAGGAACATGGCTGGGGTGTGTAATGGGCCCCCAAATTCTGAGGCTGCTTCCTGGCACTACTCAGACTCTCAGG--------------ATCTCCTCAGAAGCCAGAGTCT-TTCTGGCTC---AGAACAGGTATTTGCCTGGTGATGCAGTCCTACTCTGAATTCAGAAGTGGCTCCTCCCTTCTCTGAATAGTCATGCAGCCTCAAGTGTGGCAAGTAGTTTGCTTCCTCTTCAGTTCTGGGGTA---AAGGGGGGCATACCCAAATTCATTCACCATCCACACCCCCAC----AATCTGAGATTC----CAAGAATCTCA-GATCTGACAAGGCCTGGGTCACCACCAGAGAGTCCTCTCTGCGTTTCCGGATTTCCTTCCCAGCAGGCAGCACCCCAAGTTTCACTCACCAAGGCCACACCCCAAGGTGTCCCAGAAACTGGGGAGGCAGTGCTCCATCCAATAAAGCGGGCAGGA----AGGTGGCCCCAGGTCCTAGGTGCTCCTGGATCGTGTAGTCTTTAACTGCTGCCCCAAGGGACCTCAAGGAATAGGAAT---TCTCTTTGTTAGGAGGTGGAATGAAAGTGTCCAGCAAACTCCAGCCAGCAGCGTTCGTCCCTTGATTTAGAGGGCTATGATTTCTACAAAGTGGCCCGACTGGCCCGCGAACACGCAGCAGAGACGCGGCCTCCACAAGGTCAGAACTAAGATGTCCTCAGAGATCCCCAGTTACGAAGCAAAGCGCGGGCCTACTTCGGGACCTACGCGTCCGGGCGCTGTGCGCGGGGACCGCTCCCGGGCCCAGCGTCGGGGCCGCGGCCTTGGGGAGCCGCCGGGAGCCGCGAAGCCCGGAAGCAGCTGCACCAGGACTGGAAGGACCCGCGGGGGCGGTGCC-GCAGCTCATGGGGCGGACCCTGCGAATAGACCGCCCCCG-TATACCCCGCGC-------TGTCTGTGCGCGCCGGACCGC------CAAACCGAGATTAGCAAGGACCAGGACCTTAATATAAACCCAGCTCCCCATTTTCCCGGGTTTCTCATGCTTCCCTAAACTCGGTCGCCCCCTACAGCCCCCTGCCCCTGGGTTCTTTTCCACATCCCCCACCACTCCTCCA---------TTTCGCATCCAAGACTTCATGAAAGGCTTTCCCAGAAAAGAAAAAATGAGGAGTCT-TGCGACTTGAACAGCCCTCCCCTGCCCGTCT--GCAAATTTGAATTCCTGGATTTC-----ACAACAG-TGAGCTCTTCTTGTGCCTACCACCCGGCATGAGCAAGACAAGGGGGTGGGTGGTGGGAGAGTGGGGAAGTGTGGGAAAGAAAAGTGTAGACAAAT--------------------------GGGTGGAACAAAGAAGTTTGACTTAAAGTTTAGATTTGGG-GGCTAGAGTTCTGGTCCCAGTTCAACTA--AGTGTACAAGCTTGATAA-TCGTGGGCCCTCCTATCACACTGGCCTCTTCCAGCAAAACCCTACCCATTCTCATCTCTAGAGGCCTTG-----acttcccttatcaccctgcattataatatttgataacatgg s canFam2.chr12 4144441 4376 + 75515492 GCTGGTACTGTGTGGCTGGGAGGTCACT--GTCTTTTGTCTTTG---CCACCGCTTCTGTAGGAAAAATGGACACTGTGTGCCCCGGAAATGGATCTACCACTTGACTGAGGGGAGCACAGATCTCAGAACTGAAGGTTGGTGTACTCCGGCCTTCACTCTCCCCATGTCCCCTGGGCTTGCTTGGTTTTGCATCTCTGTCCTCACACTTCCCCCCCC------AACAGGCCGCCCTGACATGAGGACCATGCTCTTCTCTAGCTCATGCCCCGGTGGAATCATGCTGAAAGAGTCAGGCCACGGTTACCAGCGCTTCCTCCTTTATAGTGAGTGGGGATGCCAGACAGGAAGGGTTGGAGAGAAACACAGGAGGGCGGAAGAGCCTCTCACTCTGGGCCTTATGAAATCATCCCAGGAAGGACTGGGTGCTTCCCCTCACCAGGGCAGTGCTGAGAAGCTGGGACTTTGATGGGCCTGGCCCTGCCCTGCTCTTCCAGATCGCTCACCACACCCTCATGAGACATGCGTGGAGGAGTTCCAGTCCCTGACCTCCTGCCTGGACTTTAAGGCCTTCTTACGGACTCCCAGGAATCAAGGTAAGGGGGTAAAGTCCCACAGAAGAGGACTAGGACTCACCAAGTCTTCTGCAGGTGCTGGATGAAAGGGACTCAAGTGATGTCACTGGAGGGCAGGCCAAAGGCTGACATTATTAGAGTGGCTGTGCTGACACCTCCATTTGTGTCATAGGCTGTGATGTCACCTGAGGGAGCCAGGCTGGGCTCTGGGCTACTCAAAAGAGAGGTTCCTGAGTTTGTGGTGGATAAAAGGAGGGGGGGGGGTCAGACAC--AGGGAAAAAGACCTCAGAGACCCCTTCTTTGATGTGGGGAAGAGCAGAAATGCATTCTCCTCTACCCCACCATCACCAACCTTGCTTTTTTCCCTGGAGTTCCTTCCTTTCCATTCTCTTCTTTTCTCCCTCCTCCCAC--CAGAGGCCTGTGAGCTGTCCAGTAACTGACCTGTGGCTTCATCTGTG-CCCCAAATGGATATGGTGAGAGCTACAGTTGTGCTGGGGGAAGGAGAAGCTGGAGACT------CCCAACTCCCTTTCAAGAGTAATAAAGATGATTTTTCAGTCCTCATCTCATT-TCGGGTTTGTCTCCAGACATCAGTCTTCCCCACCTCTATCTCAGTACT-TCCTTGCACTTTCTACTACCTAAACCCCCTGCTGGACGGCGTCAGGAAATGACACTGAGTGGTGGTAACTCT--CTTTGTAGTGGTATATTTAGGATTTGATGTGACAC----ATTTATTGCTGACTGTGCAAACACCTAGTCCCAGAGTGGGAACTCCAAGCTCCAGTTCTT-CCCCATACTGCCTGTCTGAACTGCCAACCCCTCTGAATCGGTCCTCCTGCCTATATGACCTGCACCATACCCACTCCCCCTGGCTCCTGGGAAGATCCAGATCCTTCCTGCAGGCTCCTAATCA-CTGTAGGCCCCTATCCACACCCCTTAACCCACCTGCCT--CAGTCCCATTCTTCCCTACATGGCTTAGATCCTAGGATCCAAGGGATCCCTTGGGTCT-CCAACCACCCTCTTACCCTAGTCAGAAGCCTTTCTGTCCTGCTTCTGGT---CTCCACCTCTGGGTAGTTTTGAAAGGTAACGATGACTCTTTAGTCTTTATTTTTCATCACTATGCTTTTTTTTTTTT---CTTTTAAAAAGTAAAGGTGGAAAGAATAAACGAA------ATGGGAGAAATGTAAAAGCAAGAAGTAACAACAGCTGGTGAATTCAAGGGCCATATCCCCATTGTACATAA--ACAGATGCCCTAAATAGCTCTA--CTCTCCTGTGTGTGAAGGAAGGCCATG--CCCTCATACTCTGGGGTTTCTTCCCCATTCCTGAGGTCCCTATGCTTAC-ATCTGGGTCATGGCCCCCACTCTCCTAC----ACCTATCTTTCTCCCACCCCACTCAGGGTTGGGTCACTAGGTCACACCCTATCCTGCAGGCATAACCCCTCTCCTGGGTCT--CCTCTATTCCTTACCCTCCCTCTCCAACTTCTCATCCTCCAAGTCAGTGGCTTCCTCCTCCCCACTGGGCTCCCGGAGGCTGACTGCCAGCACCAGGGCCTGTAGGAGACCAAAGAGGCAGGCAAAGTGCAGAGGGTGAGCAGTAAGTAGGCTCAACACAGCATGGAGCCCATGCAGAGCAGCTAGGAAGGATAGTAGCCCATGCAGCCAGAGGCCCAGCGGTCCACGCAGGCCCAACGCGTCCAAAGCTGCTCTCAGAGGGCGTGAGCACAGCCCCAGCAGGGCTGAGGCAAGCAGCTCCAACAGATGCAGAGTCAGGTTGGTTGATATCTGCAGACTCTCCTCTGGGCTCCCCAGGTACTGCAAGGGAGCCCCTGTTCTTCCACCTGGATCCCCCTGCAGCCAGCCCAGCAGCTTCTGACGCTGCCCTGGCTTCTCCACTGGGGCTTCAGGCACAGGGGGGCTCAGTACCTCTTCAGGGGACACTCCAAGT---CTGGTGCCACTTGAGTCCACAGGATCCCAGCCCAGTTTGGGAATGGTCCCTCCAGTCTCCAGTCTCCCAGACTCTTGAGTGTTAGAAGCAGTCTTGTTCCACTTGAAGGAATCCATTCTGTTGCTCCCCAGTTGCTCATCTCGG---TACTCTCTGCTTGGTTCTGGAGCAGCCCCAGAGCTCCTCCGTGCCCCTGTGTCCTTGGTCTTGGGAGGCCCCACATCTCCCATGGTTTCTGGGGCACTATCCCAGTCACTCCCTGAATTCTCAGAGGAGCTATCCATTCGTCTGAGTTCTGGGGTAGGCAGGTCAGGCTTCGTTGGTTTCCGGTGGCCCCAGGGGCGAGGTAGCCAACCACCGAGGCGTCGCAGGAACATGGTTGGGATGTGTAGTGAGTCCCTAGATTCTGGGGCTGCTTCCTGGCACCGCTTAGATTTTCAGGTTTGGGGCCTGAGTGTCTCCTCTGAAGCC--AGTCTGTTCCAGCTCAGAAGAACTGTTATCTGTTTTGTG----AGTTCTACTCTGAACTCAGAAGTGGCTCTCCACTTCTCGGGAT-GCTGTGCAGCCTCAAGTGTGGAAAGCGGCTTGTTTCCTTTTCAATTTTGAGGTAAAGAAGAGAGGCACATCCAAATTCGTTCACCACCACCACTACCACCCCACACCCAAGATGCAGGACAAGAATCCCAGGACCTGACAAGGCCTGGGTTACCCCCACGGTGTTCTCCCTGGGTTTCTGGGTTTCCTTTCCTGCAGGCAGCACCCCAAGTTTCACTCACCAAGGCCACGCCCCAAGGTGCCCCAGAAACTGGGGAGGCGGTACTCCATCCAAGAGGGAAGGAAGGAAGGCAGGTGGCCCTGGGTCTCAGGTAATCCCAATCTGGAGAGTCCTGAACTGCTGACCTAAGGGAGCTCAACAACAGGCAACCAATCTC-CTATTGGGGGTTAGGAGAGAGGTGTTGAGCAAACTCCAGCCAGCAGCGTTCTTCCCTTGATTCAGAGGGTTATGAATCCTACACAGCGGCCCGACCG------------GCAGCTGAGACGCAGCCTCCACAAGGTCAGGCCAGAGGTGTCTCGGGAAATCGTC-GTCGCGAGGCCAAGCGCGGGCCTGCCGGGGTACCTAGGCGTCCGGGCACTGTGCACTGCGACCCCTCCC-------------GGGCCGCGGCCTCCCCAGGCCGCCTGGAGCCGCAGAGCCCGGAAGCAGCTGCACCAGGGCTGGAGGGACAGACGGGGGCGGAGCCTGCAGCTCGCGGGGCGGGCCCTGCGGATCCAcccccccctcccccccccgcgcccccgcgcgTTTGTACGCGCCACTCTGCAGGGTGCCCGCTGAGATTTGGCCGGGCCCGGGCAGGAGGGGAAACCTGGCAGTGAGTTTTCACTG----CCCGAGGGTCCCTGG--------GCCGCCAGTGTTTCCCTGACCCTTGGTTCTTCCCTGCCTCCCCCCCGCCCCCCCTAACGCCAGCTTTTCATGGCCATGACTTCATGAAAGGCTTTTCCGGAAAAGCAA----GCTGCTTCTCCGGTACCCGTGTTGATCTTCCTGACCCCTCCAGGCCGATTCTACTTCCCGGGGTCAGTCGGACAACAGTTAAGCTCTCCTTCAGCCAGGAACCTGGTATGAGCA-----------------GCAGGAGGGCGGAG----------GAGACAAGTGTAGACAAATAATGTGCTTCCTACCTCTGGAGTTTCAGGTAATAAAGTGAACCTTGATTTAAAGGTTACATTTGGGAGGCCAGAGTTCTGGCTCTAGTTCAGCTAACACCATTGAGGCTGGAGAATTCCTAGGCCCTCCCAGCCCATTGGCCTCTTCCTGCAAGACCCTGCCTACTCTCATCAcctcagagcttgcccaagcttcccc--tcactatgcattgt-gtatttgatcatgtag a score=2814 s hg19.chr6_ssto_hap7 2960317 89 + 4928567 ccctctccagctgtgaactctttgagggttggga--atgtctt-tacctgtattcttggcacatagtatatggacttatgt----ttgtgaatcag s canFam2.chr12 4148820 91 + 75515492 cctcccccagctgtgagcaattagaagtttgggactatgtctCACACC-----TCTTAGCACATAGTATCTGAACTTGTTTAAAATCAGTAATCAG a score=58833 s hg19.chr6_ssto_hap7 2960406 998 + 4928567 tgaatTGGCT---GTAGTCAGGGAACTCCTCCTGGGGGAAGTGAGACTTGCACGAAGC-TGGGCAATTCTTGGTCCAGGGGGGTTGAAAGAATAGGTGGGGGACTCCCAGGA-GGGTCTGGGACCTGAAAGTGAACCCAGATTGGCAGGGAGGTGACCTTATCATGCCACCTGGAGAGGCTGCCCCTTCTGACTCAGGTGGGACTTGCATGTGGCTCCCAGGCTTCTGTTTGG-CTTCCTCAAAATAGCTTCCAGAAAAGTGAATAAACCACAAATGG------TTGATTTATTTCTGA-CTCTCAGCCCGTCTCTCACGAAGACAGAGCCTATTGACCAAAAACTTCAGGATCTGCATCTGGGCAGATCCCAGGAAGGGGAAGTCAAAGGGCCCAGGTCAGAGGCCCAAGTTCAGACTTCAGCAGCAGACTAGGGTCAGACTTTACCAAAGTCAGAACTCGAGGTTCATGTAAGTCCTTAGATCCCGCTCCCAAGCCCTGTCTTTCTCCTCCCTCCTTCTCTCCTCCCTCCAGCTCAGTGTGGCCACCCGAGGGGGTCTCTCCCTCCCAGCCACAGCTCGGGTATCCCAAGCTGGGAAATGTGTCACTCGGGGCTGGGGTGCTGATCTGTAGCCTAGTCCTTCCTGGTCTCTCTTGAGGACAGTGGGGATGGGATTGGCACGGCCCTCACCCCGGGGTCCCAGCCCCATTCCTGGCTCCCAGCCCCCCCTCAGCAGCAGTTTGAAGCCCGGGCTGGAGATGGGCACCCCAAGTGGAAGGTTGGGAGGCTGAGGACCCTGCGACAGTGACAGCAGGTGAGCAGTGGATGTGCGGTGGTTGGAATCTTGGAAGTGGGTGTCACAGTTCTCGCAGTACTGGAGGGAGGGAGTAGGAGACCTGCAGAGAAAGAAGAAAAAGCATTAAGGGCAGGGGAA----GGAAAAGGGGAAGAGTTGAGGCCTCAGAGGGGGCTGGCAGGGTAGAATAGGATCTTTTCAGCTTTTCTGCTAAGGA s canFam2.chr12 4149314 1001 + 75515492 TGAATTGACTGGAGTGGTCAGGGGACACTTACTGGTGCAGGCAAGCCTGGCATAGAGCTTGGGCAATTCCTGGTTCA-GGGGATTGAAAGAATAGCTGGGGGCATTCCAGGCTGGGGCTAGCACCTGGAAGTGAA-CCAGACGGGCGGGTAGGTGACCCTATCCTGCCACCAGAAAGGGCTACCCCTTCTGGCTCAGGTAGGATTTGCATGTGGCCCCCAGACT--TGTTTGGCCTTTCCCACAATAGCTTCCAGAAAAGTGAATAAAACACAAAAGAAGAAATTTGATTTATTTTTCAGCTCTCAGCTTCTCTCTCCCAAAGGCAGAGCCCACTGACTACAATCTGAGTGTTTGGAACCTGGACAGACCCCCAGAAGTAAAAGCTAAAGTGCCTAGGT-------CCAAGTTCAGACTTCAGCAATAGATCAGGATCAGACCTTACCAAGGTCAGAACTCAAGGTTCATGTATGTCCTCAGATCCCACTCCCAGGCCCTGTCTTTCTCCTCCTGCCTTCTCTCCTCTCTCCAGCTCAGTGTGGTCACCCGAGGGGCTCTCTCCCTCCCAGCTATGGCCCGAGTATCTCGGGCCAGAAAGTGTGTGACTCGGGGTTGGGGCACCGATCTGTAGCCTAATCCTTCCTGGTCCCTCTTGAGGACAGTGGGGATGGGGTTGGTGCGGCCCTCACCCCGGGGTCCCAGCCCCATTCCAGGCTCCCAGCCTCCCCTCAGCAGCAGCTTAAAGCCTGGGCTGGAGGCGGGCACCCCAAGGGGCAGGTTGGGGGACCTGAGATCACGAGGCAGTGACAGCAGGTGAGCAGTGGATGTCCAATGATTAGAGTCTTGGAAGTGAGCATTGCAGGTCTCGCAGTACTGGAAGGAAGGGGATTGGGACCTGTAGGGGAAAAAGAGAAAGAGATGAGGGCAGGGGAAGAGTGGAGGGAGTGGAGAGGGAGGCAGGCAGAGCGGGGTGGCAAGGTGGGA---AGTCCTTCTAGCCTTTCTGCTAAGAA a score=1901 s hg19.chr6_ssto_hap7 2961830 31 + 4928567 ACAAATTGCCTTCCTTCCTACTTAACAGTGA s canFam2.chr12 4150315 31 + 75515492 AGAAATTGCCTTCCAACCCACTTAGCAATGA a score=3083 s hg19.chr6_ssto_hap7 2962007 68 + 4928567 GGGATCCAGAGCAGAATAGTTGAAAGAAAAAAATGGTAACCAGACCTAGCAAACTCTTGGGCAAGGGG s canFam2.chr12 4150346 64 + 75515492 GGGACCCAGAGGGGAACAGCTAGAAG----AAATAGCAACCAGGCTTCACAAGATCTTGGGCAAGGCA a score=6738 s hg19.chr6_ssto_hap7 2962075 197 + 4928567 AGGGACATTAGTCATA-ATGACTatagcta-------acattcatgtattgcatac---------tatgcggcatg-cactattctagcattttacatatattaacccattgaatcctaacaacaat-----------tcttacta-cccccatttctaagatgagaaaactggaacatgtagacattaggttgtttgcccaagtaagtggaatcaggctttaaatc s canFam2.chr12 4150606 227 + 75515492 AGGGATCCCCTATATATATGTATATAGTTAATCCCCtatatatatatattaactatatatatatatatatGGTAAACCGTCAtcctaacactttacatatattgacccattaaatcctcacaattctttaacaggtgctcttgttaccccccatttctcagataaggaaaatgaggcacataaaaattaggttgcttgaccaagtaagtagaatcagaatttaaacc a score=167470 s hg19.chr6_ssto_hap7 2962272 3438 + 4928567 cagggagctcatgtttataaccacttgactatactACCCTGTCAACCTACACATGAGGATAAGGAAAGAACTCTTCAGCACTGTGCTGGGGCGTCTGGTGTGGTGTGGCTGGGAGAGGCAGAACACAATGAGACATGGGTCTGAGCTAAAGTTTCCCCTTACCGGTTTTCCGGGCTCCTTGTCTCTCCATGGCTCTCCCTGACCATGCGGGCTACCTCAGGGAAGCCAGCTTCTTCAGCGAGCTGAGCCGCATCCCTGCCACTCAGCTCACAGACCCCCACCCAGGCAGCCCCACGGCCCAGGAGATAGCTCACAGCTGCCCCCTGGCCCGCTCGAGCAGCACACATCAGTGGGGTCCACCAGAAGGCATCCCGGGCGTTGATATTCCCCCCAGCTCCTCCTGCCTCATGCGGTTCCAGCAGTCTCCTAAGTTCTGGCAGGTCCCCCTCCTGGGCTGCCCTCAGTATCCGGTGAGTCATCTTATCCTCAGCCTCAAGGGATCTCCCTTGTCCATGTCTTCCTGATGCTCCTTCTGCCACTGCTTCTGCTGCTGGTGCCTTCATTATTCTTCTTTTCTTTCTCTTTCTTTCTCTGGCAGGTTCAGTCTGAGATCTCTGGGAGTCAGGAGCGCTGCTCTCATCCCCAATCAGGGCCTCATAGAAAGCTAGGGCTGCAGCCCCATCCAGGGTGGACTCTGGCTTCTCGGGCTGTGGCTGCTGCTGCCCATCCTTCCAGAGGTCGCTGGGGTCAGTGGCTGGGGTGAAGGTGATGAGCAAGGGCCGGGACATGGCTTTTGGGAGAACTGAGAAAATGATACCAGGCAAGGGAAGGATGAGACAAGTAAGCCAAGCTCGTGGTGACCCTGTAGCAACCA----CAGCCTCAGAGACCTGCTGGGATGAGAAAAAGT-----------AGTCAAAAACACTTTCCTGCCACTAAAGTAACCCCACAACTTAGGACTCTGCAGGGCCTAAGGGAGAGAGACTTTGCGTAAAAACATGGAACCCTACAATACCGACTTTGCTCCTTAGTAAAGATTAAT------AAAACTCCATGAGACTGTTGTCCAGAGGTCCTGCGTCCGGCCCCCACCCCCATCCTCACCAACAATAAACACCAGCCTCTTTCTGAAACCACTTTCCCACCCCGTAAGACATACCAGTAGGAAAAAAAAATCAGCCTGGCCCTTTAAGTCTTCCGCGATCCCATTTCGGAGTTTCCTCTTCCCAAACAAAAATAGATGGGTCACTCCCT------------AGAAGATCTCGGGGAGAGTCTCCTATACGTGTTG-----CTGTGTAGCTTCCGTACCGCAAAATGGCGCCAT----TCTAATCAGAAGAGTTGACACAATCAAATAGCCACACGGCACGAAGACGCATGCGTGGC-GACAACAACAACAAAAACCACAACCCACATTACTTGAGGGCTCGGGCGTGCGCAAAGCTCCGGGTTCAG-TTTCCCGCGCTGGAACTTTTTCAATAGTAAACGAGCAAAGCTCCGCGCGCCCAGGTGGCGCGAGCAC-TAGGATCTGTCGGTTGGGGTCCTACTTTTACATAACGCCCCCACAATGCCCTTCGCCTTCCTCAACGTGG-CCCCCGCTCCAAGCCCATTTTCTGGAGCCAGGAATCCACTCTGTGGGTTAGGAAAGGCCCTCAGGAGGCGGAGGGAAACCTGTGGAATGCCGAGAAGCCGTGTAATGAAATAACGTCACGCCTGCCCCTCACCATTACTCTGACCAGGGTTCGAAGGTCACACTTAGAGC--------------------------CTAAGGGGAAATGGAGAAGTGCAAAGGGACG---AGCAGAATGGCTGGCACCACCTCAGGTTAGCGCACTGGGACGTTCCAGTTCTCACACCGCCCACCCCACCCCA----------CCCAAGTCCC-TACGCACGGAGCCAAGCCGCACCTCTCCCCTCATGAGGCAGGAGCCCGGAGGAAACAGTATGCCCGTCAAGGGTCTC---TGGCGGGACTGATTCGCACTAGGGGCCCAACAGGCAATAAGGACCCAGCGGATTGGCCGAGGAT-AGGCCAGTCCCCTGGGC-----------------AGCAGCGCCTCGCCGGGACTAGAGGGGAACGTGAGGAGAGCTGCGGAAAGAGATCCAGC---CTGGCTCCCTCCTTTCCCCGCCCTAAGTCAGCCTCTTCACCCAGTGAGCACAAAACTGTATTGCCCAGACTCCCGGGCCCCGAACGCCATACCTGGCTTCCGCTTCCGGTGGCTTCTCGTTGTGCCCCGCCCGCAAGCGCCCTCCTCCGGGCCTTCGTGACAGCCAGGTCGTGCGCGGGTCATCCTGGGATTGGTAGTTCGCTTTCTC-TCATTTAGCCAGTTTCTTTCTCTACCGGGGACTCCGTGTCCCGGCATCCACCGCGGCACCTGACCCTTGGCGCTTGCGTGTTGCCCTCTTCCCCACCCTCCCTAATTTCCA-----------------CTCCCCCCACCCCACTTCGCCTGCCGCGGTCGGGTCCGCGGCCTGCGCTGTAGCGGTCGCCGCCGTTCCCTGGAAGTAGCAACTTCCCTACCCCAC------CCCAGTCCTGGTCCCCGTCCAGCCGGTGAGTCTGAAGTCGTCGCTGCTCCGAGTCCCTTGTCGCTGGGAGCGGCACATGGGGTCTCCGGACTTTGATGTGGGGGCGGGGGAGGAAGCGACCAGGTCCGGCA-CGAAGGAGGGAGAGGTGGCCTGAGGAGCGGAGGGGGGATGTGTGGATTCCGGTGAAAGGGACCTGACAATCGCCCCCAACCCGTGAGAAAAGGAGGAGCCCGGTTCTTGCTTGAGAATGATAAACTTGGAAACCCTTGGGAAAGGCGTGGGGGTCATGCAGAGACTTGTATTGGTAGGGAGCCTGAGTCGAGGTCCCTGC------CGGAGTTGACACAGAGGAGAGAGGGCCCTGGCCTTCGGGAGCTCCAGGGATGTGGGTCGGGCTGGTGGGTCAAAGTATCTGTTGGCTTCTTTCAAGTGGTGGGACCCCAAAGAATGTTTAACTTCAAAGAAAAGGGGCTGAGATGTAAATTAGAGGAGCTGGAGAGGAGTGCTTCAGAGTTTGGGTTGCTTTAAGAAAGGGTGGTTCCGAATTCTCCCGTGGTTGGAGGGCCGAATGT-GGGAGGAGGGAGGATACCAGAGGCAGGGAAGGAGAACTTGCGCTTTACTGACACTGTTCTTTTT-------CTAGCTGACGTGAAGATGAGCAGCTCAGAGGAGGTGTCCTGGATTTCCTGGTTCTGTGGGCTCCGTGGCAATGAATTCTTCTGTGAAGTGAGTTCTCTTCAACCTCCCTACTTGCCAGCTTCACATATCTTCCCACCAGACGTTCCTTCACATATTCCACTTCTACACTGTTCTCTTACATGCTATT-TGAAAAC---TTCCTATCAGCAAAGAGTCCCCCCTATAA--ACCCCGACGAACCTGTGCTAAAGTGGCaaaactggggcccaagtcctgagtctgccaccgtccagcaatataacgttgggctagtcaAt s canFam2.chr12 4151030 3448 + 75515492 CAGGGAGCTCACATTTACTACTACTCGATTCCATTGCCATATCAACCTACAC-TGGGGATCAGGGAGAGAATCTTTGAGTCTGTTCCGGAGCCTCTGGCATGGAGGGACTAGGAAGGGCAGAACACACTGAAAGATGGGCATGGGTTAAGGCTTCCTCTCACCGGTTCTCTGGATTCCTCGTCTCTCCGTGGCTCTCTCGGACCATGCGCGCCACCTCAGGAAAACCCGCTTCTTCAGCCAGCTGAGCAGCATCCTTGCCACCCAGCTCACAGACACCCACCCAGGCAGCTCCACGGCCCAGGAGATAGCGCACAGCAGCCCCCTGGCCTGCTCGAGCAGCACACATCAGGGGGGTCCACCAGAAGGCATCCCGAGCATTGATATTGCCCCCCGCTCCCCCTGCCTCGTGGGGATCCAAGAGCCTTCTTAGTTCTGCTAGGTCACCCTCCTGGGCTGCCCTCAGTATCCAATGGGTCATCTTGTCCTCTGCCTCAAGGGATCTCCTTTGTCCATGTCCTGCTGAGGCTCCTACAGCAGC---------------TTCCCCCATCATTCTTCTCTTCTTCCTCTTTCTTTTCCTGTCAGGTTCAGGCTGAGATCTCTGGGATGCAGGGATGCTGCTCTCTTCTGCAATCAGGGCCTCATAGAAAGCCCGGGCTGCAGCCCCATTCAGGGTGGGCTCCAGCTCTTCAGGCTGTGACTGCTGCTGCCCATCTTTCCAGAGGTCACTGGGGTTGGTGGCCGGGGTGAAGGTGATGAGGGAGGGCCTGGACATGGCTTTTGGGAGAACTGAGACAATGAGACTAATTAAAGGGCGTATGAGACAAGCAAGCCAATCCCTTGGTGGCTCTGCACTGACCAGAACCACCTCCACAGATCTGCTGGGATGAGGAAAAGTAGCCTTTTCCAAGTCAAAAAC-CCGTCTTATACTCTAAGTGACCCCACAACCTAGGACCCTACAGGGCCTAAGGACCATAGGTCATGTGGAAAAACAGGGAGCCATACAATAACAGCCCATATCCCTCGTAAAGGTTAACTTAACAAAGATTTAATGAGA--ATTGCCCAGAGG--------------CCCATCCCTATCCTCACCAATAAGTAAAAACAGCTTCTCTCTCAAACTACTTGATCACCAGGTAAGACGTGCAGTTAAG--AAAACAATCAGCCTAGCCCTTTAAATCTTCCTTGATCCTATGTCAGGGTAGGGTCTTTCCAAACAAAAACAGACTTTTAACCTTCTCCGGATGCAAGAAGAAGATTTGGGGGAGAAACTCCAGTCTCTGTGGAGACCCCACAGGGTCTCTGTACCACAAAA-------ATTTTATCTAAGCAAAGGTGCTG--CCAGTCCAATAGCCACACGACCCAGACACACATGTGTGACTGAAAAAAAAATCAACCACCACAAAGCAGA--ACTTGAGGGTGCGGGCGTGTGCGAAGCGCCAGGCTGAGCCTTCGCACGGTGGGACCCTC---------------CAGGATGCCACGTGCCCAGGCAGCGCGAGGACAGAGGCTCTGTCGGTTGGGGTCCTACTTCTACATAACG-CCCCACAATGCCCTTCGCCTCCCGGAACGTGGCCCCCCACTCTGAGCGCAGTTTTTGGACCTGCGAAACCAC----CGAGTTAAGGAGGGCTCTGAGAAGGCGGGAGGAAACCTGTGGAATGCCCCGAAGCCGTGAAGTGAAATAACGTCACGCC-ACCCCTCACCATTATTCTGAGCAGGGTTCGAAGGTCACACTTAGTGCCCGCAGCAGAAGGCCCCATTCAAGCTCTGAGAGGAGATGGAAAAGTGCAAGGGGACGAGCAGCAGAATGGCTGGCGCCACTTCAGGTTAGCGCAC-AGGCCGTCCCAATTCTCACACCGCTCACCTCAGCCCAGCCCACTCTTCCCACGTCCCGCAAGCAAGGAGCCCGGCCTCACCTCCCGCCTGAGGAGACTAGACCCCGGGGTGAAGCACCGGCCCGGGTGGGGCCTCCAGTGGCGGGCCTGACTCTGGCGAGAGGCTCCGCAGGCAACAAGGACCCGGTGGGGTAGTCGGGGACGAGGTCAGCACCCTGGGCTGCCGGCAAACACCTGGGGCAGAGCCTCGCTG--------------TGTGAGGGGAGTTGC----AGGAATCCAGCCCTCCAGCCCCGTTCCTTCCCCGCCCCCTCCCGGCCCCTCAGTTGCGCGACCCTACGACTCTATTTCCCATACTCCCTGGCCCAGAACGGGGTACTGCGCTTCCGCTTCCGGTGGTATCCCGCTGCTCCCCACCCCCGAGCGTCTTGTTCCTGGGCCTCGCGACGCCAGGGTCGTTCGTGGGTCATCCTGGGATTCGTAGTTCGCCTGTTCTTCGCTTCGCCAGTTTC--TCTTTACCTGGGACTCCATTTCCCGGCGTTCACTGCGGCGCCCGACCCTTGGCGCTTGCGCGTTGCCCTC-TCCCCACCCTCCCCAATTTCCACACACACCGCCCCCCGCCCCCCCCCTCGCTACTTCGCCTGCCGCGGTCGGGTCCGCGGCCTGCGCTGTAGC---CGTCGCGGTTCTTTGGAAGCAGCAACTCCCCTCCCCCACCCAGGTCCCGGTCCCGGTCCCCGCCCAGCCGGTGAGTCTGAGGTCGTTGCCGCATCGAGTCTTCCGTCCTTAGGCGCGGCACATGGGGTCTCCGCGCGTTGGTGTGGGGGTGGGGAAGGAAGTGACCCGGTCCGGCACCGGGGGAGGGAGGGTTGGCCTGA------GAGGCGGGGTGTGGGGACTCCTGTGAGAGGGACCC-AGGGCCACCTCCAGGTCGTGAGGGGA-AAGGGTCCTGGCTTTTGCTTGGAAAGGATAAACTTCGGAACCCTTGGGAAAGGTGTCGGGGACATGCGGAGACCTGCG-GGGTAGGGATCTCGAGCCGAGAGCCCTGCGAGGGAGGGACTTGACGTAAAGAGGAGAGGGTGCTGGTTTTCGGGATTGTTAGGGGTGTGGGTAGGACGGGTGAGCCTAG--ACCTGTCGGTTTTTCAGAAGTGGTGGGACTCCAAAGAGCCTCTA------------------------GTGAATAAGAGGAATTGGAGGCAGGTGCGCCAGGGTCTAGGATCCTTTAAGAAAAGGGGGCTCCAAATTCTTCCATGGTCGGGGAGCAGAGTGTGGGGAGGAGGGAAGGTACCAGAGACAGGGTGGGGGAGCTTGGCCTTTGTTTACCCTCTTTTTTTTTTTTTTCCCAGCTGACGTGAAGATGAGCAGCTCAGAGGAGGTGTCTTGGATATCCTGGTTCTGTGGGCTCCGTGGCAATGAATTCTTTTGTGAAGTGAGTTC---TCAATCTCCC----AGCTATGTCCGCACAAAGTTTGGCTGTATGTTTTTCCACATATTTAGCTTCTAC----TTCTCTTACAGGCTGTCATAGAAACTTTTTCCTGTCAAGGAAGAGTCCCTTCAGTAACTCCCCTCACTAATTTGTG---AAGTGGCAAGACT--TGCCCA--TCCCAAGCCTGTTACTGTCCAGCGGTGTAATATTGGAAAAGTCAAC a score=68008 s hg19.chr6_ssto_hap7 2966013 1330 + 4928567 TGTAT-----------------------------CTTTTGTTACTAAAGTGGCACTGCTAGTACTTGTCTCAGGTGGCCTTTAGGAAAACTGAAATGCTACACATTGAAATGTTTTGT----------------------------------------------TCAGAAACCATGCTGTTCAGCTTCCACCTTCCTTAG----CCAGCT---------GAGAGGACAAAACTGGTTCCTAGAGACGGGATACAGGAGTGGAGTAGGGACAAAGATCTTGAAAAGAATGTC----TAAGAAAAAGATTGCTGTATCTACTTATCCTTAGAAAAGAAAAGCCAAAGCTTTTATGGGAGAG-AGTGTAGGTGAACTAGG--GAGAGACACAAGTACTTCTGCTGAGTTGGGAGTGAGAAACAAGCACAACAGATGCAGTTGTGTTGATGATAAGGCATCACTTAGAGCATTTTGCCCAGGTCAAAGATGAGGATTTTGATATGGGTTCCCTCTTGGCTTCCATGTCCTGACAGGTGGATGAAGACTACATCCAGGACAAATTTAATCTTACTGGACTCAATGAGCAGGTCCCTCACTATCGACAAGCTCTAGACATGATCTTGGACCTGGAGCCTGGTGAGGCACCCTCAGGGTTGTTT-----TGTGTGTGTGCGTGCACTATTTTTCTCTT------CAAATCTCTATTCACTTG---CCTGAATTTTGAAATTTCC-TTTGGTTCTCTGATTTCTTTAACCCCAAATTC-ATGCTTTATTTTGATCCTCCACCTGACTCTTGTCTAGTTTTGTGACGTATATCACTTGTTCTCATGTT---TTCTAAATCCGCAATTCAGACCTATTCCAAAATGC--GTTTCCTCATGGGTCTGGTTTGTTGTCTGTTTCTCCTGCTTTGCACCTTCCAGTCTAGAGTTTCATCTTCTGCATTGACATTGTTGCAGTTATGTATTGAGGAGGGAGTTGGGAGGGAGAGCAAGGAGCAGAGGCTGAAAAGGTGTGAAGGGAAGGCAGAGCTGTCT----TCGTTTGATGCAAGGGTCAGAAGCCCAGGTTTCTGGGTCCCATGCCCAGATGTTGGATGGGGTAAGGCCCAAAAGTAGGTGCTAGGCAAACTGAATAGCCCGCAGCCCCTGGATATGGGCAGGGCACCTAGGAAAGCTGAAAAACAAGTAGTTGCATTTGGCCG-GGCTGTGTTTCAGATGAAGAACTGGAAGACAACCCCAACCAGAGTGACCTGATTGAGCAGGCAGCCGAGATGCTTTATGGATTGATCCACGCCCGCTACATCCTTACCAACCGTGGCATCGCCCAGATGGTGAGGCCTCTCTGCTCCTACCTGCCTCCTTCTGAGCAGTAAGAGACACAGGTTCCTGCAGCAAGAAGTCATGTTTAAGCCCTGTTTAAGGAAGCTAGCTGAGAAGA s canFam2.chr12 4154478 1404 + 75515492 TttattactactactactactactgttattcttattattattGCTAGGCTTGTACTAGTAGTGCTTAATTTGGGAGCCTATTAGG---ATTAAAATGCCGTTTATCAAAATGTTTTGTAACAGGCAAAGTTTTGTGCTAATGATATAATGGATTATAACTGCCCACAGGACCCAAGCTGTTTAGTCGCTGCTTTTCTTAGAGTTCTAGCTGCCGGTAAGGAGAGGACAAAACTGGTCTGTAGAGATGGGATCAA------GAATAGGAACAAGGATTTTAAAAGGAGTGTCTCGTTAAGGAAGAGATTGTTGTAGCTGCTTATCCTTAGGAAAGAAAAGCCAGAGCTTTTATGGGAAGGCAGTGTATGTGAACTGGGGAGAGAGACTCAAGGATTTCTGCTGAGTTGGTGTGGGGAATTAGGGAAAACAGAAGCAGTTGTGTTGGAAACAAGGCACCAATTAGAGCAATGTGCCCAGATCAAAGCTGAGGATTCTGCTATGGGTTTCTTCTTGACTTCCACATCCTGACAGGTGGATGAAGACTACATCCAGGATAAATTCAATCTCACTGGACTCAATGAGCAGGTGCCTCACTATCGACAAGCTCTAGACATGATCTTGGACCTGGAGCCTGGTGAGGCATCCTCGGGGTTATCTTtgtgtgtgtgtgtgtgtgtgtgGTTTTTCTTTTTTCTCCCAAATTCCTGTTGATCTGCTTCTTGAATTTCTAAATTTCCTTTTGGTTCTCTGATTGCTTTTGTCCTAAGTTCTGTACTTTATTTTGCTCTCTCATCTGACTTTTGCCTGGATTTGTGAC-----------AGCCTCATTCTACACTCTGATCCTGTAACTTGGCTCTCTCCCTTAATGTTAGTTTCCTCATGGATCTCATTTCCTGCTTACCTGTCTTGCCTTGCACCTTTCAGTCTAGAGTTCCAGCTTCTATGTTGATCTT-TTTCATTTATGTGTT---GAGAGAGTTGGGAGGGAGAGAAGAGAGTAAAGGCTGAAGAGGTATAGAGAGAAGGCAGAGCTGCCTTGGGTGGGTGGGTGGAAGGGCCAGAGGCCCAGGTTTCTGGGTCAAATGCCCAGGTGATGGGTGGCGCAAAG-----------------------ATGAGTAGCCAGCAGCCCCTGGAGGTGGATGGGGCACCTAAGAAAGCTGTAAGACAAGTGATTGCAATTGGCTGCGGCCATGTTTCAGATGAAGAGCTGGAAGACAACCCCAACCAGAGCGACCTGATTGAGCAGGCAGCCGAGATGCTTTATGGATTGATCCACGCCCGCTATATCCTCACCAACCGTGGCATCGCCCAGATGGTGAGGCCTCTCTGCTCCCACTTGACTCCTCTGAGGTAGTAAGGGAAACAGGTTCTTGCAGCAAGGAGTCACGTTTTCAAACTTGTCACAGATTATAGCTAAGAAGA a score=54943 s hg19.chr6_ssto_hap7 2967343 943 + 4928567 GGGGAAGAACCCCAGAACTTGGGCCTGGGAATTGAATTCTGATTGGGGGTCATCCTGAAGGGATTGTTTTCAGGGAGGGAGACA-GACCTTGAATCAGAGAGTTGTGATAGACTGCCTCTTCCTCAAGGAACAAACAACAAATGGCTCTGATGGTTTGTAGCCTGCCTAATTGGAAGAAAGGCAACACAGAAGTTTGAGAGCCCATCTAGTC--CAGAGAAGGGGCCTCTGGACAG-AGGTGGGAGGAGTGGGGGACAGAGTGGTATGGGTTGGGCTGCGAAGGGAGTTGCCTCTTCTTTACAT--CTACCTGCCAACCCCTTCCATTGTATTCACCTCAGTTGGAAAAGTACCAGCAAGGAGACTTTGGTTACTGTCCTCGTGTGTACTGTGAGAACCAGCCAATGCTTCCCATTGGTGAGTGTTGAAGAAGGGAAAGGAAAGCACCGTG---TGG-CAGTCTTATGGGAAGGAGTTGGGGCTCAACACATTGGAGCCTGAGTCCTGAGGGGAGGTTAGGTAGGAATAGGGGGATACCTGGCCTGCTGAGTCTGGCTGTCTCCCAGGCCTTTCAGACATCCCAGGTGAAGCCATGGTGAAGCTCTACTGCCCCAAGTGCATGGATGTGTACACACCCAAGTCATCAAGACACCATCACACGGATGGCGCCTACTTCGGCACTGGTTTCCCTCACATGCTCTTCATGGTGCATCCCGAGTACCGGCCCAAGAGACCTGCCAACCAGTTTGTGCCCAGGTAGGGAGCAGGG--AGAGTCATTAAGGGTCAAAGGAAAGGCCCAAGATCCCCCAGAGAG--GGGAGGACAGGGCATGGCCCTTTCTTGAGGTCTGCTTCTCCCAGAATCAGGGCATCTCCCTgctgagtgactgtgggaaagttatttgattatctgtgcttgagttaccttatt-----------------------------------------------gtag-------------------------------------------------aatgTTCTTG---------------------------------------AGCTGAGAAG s canFam2.chr12 4156069 1070 + 75515492 GGGGAAGAACCCCAGAACCTGGGCCTGGGGATTAAATCCTAATT-GGGGTTGTGCTGACTGAGGTATTTTCAGGGAGGGAGACGTGACCTTGGA-CAGGAATTTTTTGCAGTCTGCCTCTTCCTCAGGGAACAAACAGCAAATGGCTCTGATGGTCTGTAACTTGCCTACCTGGAGAAAAGGAAGCAGGGGAGTAGGAGGGCCCATCTGGCCAGCTTAAAATGGGCATCTGGACGGAAGGAGGCAGGAGTGGAGGACAGAGCAATGTGGGTTGGACTGAGGAGGGGATTGCCTCTTCTTTTCATACCTACCCACCGGCCCCTTTCATTTTATTCACCTCAGTTGGAAAAGTACCAGCAGGGAGACTTTGGCTACTGTCCCCGTGTGTACTGTGAGAACCAGCCAATGCTTCCCATCGGTGAGTGTTGGAGAAGGGAAAGG-AGGCCTCATGAAATGGCCAGTCCTCTGGGAAGGAAATGGGGCTCAGCAAGTCTGAGCCTGAGTCTGGGAGGGTGGTGGGGCAGGCTC--GGGGGTGCCTGGCCTGCTGAGTCTAGCTGTCTCCCAGGCCTTTCGGACATCCCAGGTGAGGCCATGGTGAAGCTCTACTGCCCCAAGTGCATGGACGTGTACACACCCAAGTCATCGAGGCACCATCACACGGATGGCGCCTACTTCGGCACCGGTTTCCCTCACATGCTCTTCATGGTGCACCCCGAGTACCGGCCCAAGCGGCCCGCGAACCAGTTTGTGCCCAGGTGGGGAGCAGGGATAGAGTTACCCAGGGTCAAAGGAAAGGTTTGGGATTCCCCAGAGAGAAGGGAGGACAGGGCATGGTCCTTTCTTGAGGTTTGCTTCTCCCAGAG-----------------CGAgtaaccttggggaaggtgtttgcctgcctgtgcctcagttcccttatccatgaaatgggggtgatgacagtacttgactgacagggCACATTTAAGTAGTGTGGTGCTTCGAATCATATTGGCACTTGAAGTCACCATTCAAATGATAACTGTTCTTGTCATCATCTTGGGTGCTCAACCTTTTGCCAGGAGAAAGTAGTTTAAAAG a score=89016 s hg19.chr6_ssto_hap7 2968286 1690 + 4928567 TTGGGAACCACGAGGCTTTAGCTCTGAGCAGGTCCATAGAGGAGCTCAGGTGGGGAGGTGGGAATGCAGGTGACTGGCAGGGCCTGGATGGGGCTCATGCTGCTGCCTCTCTGACCTCTGCCCTGGCCTAGGCTCTACGGTTTCAAGATCCATCCGATGGCCTACCAGCTGCAGCTCCAAGCCGCCAGCAACTTCAAGAGCCCAGTCAAGACGATTCGCTGATTCCCTCCCCCACCTGTCCTGCAGTCTTTGACTTTTCCT-TTCTTTTTTGCCACCCTTTCAGGAACCCTGTATGGTTTTTAGTTTAAATTAAAGGAGTCGTTATTGTGGTGGGAATATGAAATAAAGTAGAAGAAAAGGCCATGAGCTAGTCTGCTGGTGCTTGCTGTTGGGGAA-GGGAAGGTGATGGTGTGTTGGACTCCAGGGGCCCTCATGGCCCAGCCCACCCTCCCCAGATTGAAAACCAGGA------CAGATTTGTGCTCAGTGGA-TTGGGTGGTGTTTTTAGTATGGAGCAGAACAGAATTCCTAGGACTGCGTGTGATGAAATGCAAGGTCAAAAGGAAAAGAC--------AAAGCATATTTCAAAGATGAGAAA--TATTTG------TTTGGATATCTATGACTGTCTGTTTATACTGTAAGGGGCTTAATCAGCAGC-TCCATCTTTTAGTTTTAGTTCTAAAGGAAAAGTAGCCTAAAGTCAGTATAA-------CTAAAGGGTGGAACGAGGTGGGACAAGGTCCGGAATTGCTGCTCAGTGATGTGTGTGTGCCTGCCGCTGGTGGAGCTGAGAC-TGCTCATCTCAGAAGGATGGGGATGCTTGATTTCCTGGCCAGGTTGTCCCAGCACAGTGGGGATTGGCCCTGTTGTATGACGAAGACAGCACATGGTGGCAGAGATAGATACTAACCCATGGACTTTCCAAGGGAGGGAATAGGTCTTTGGAGGGTATGCAAGACAAAGGTAGACACTGGATAAAGAACCCGGTAGTGCCCAGGTATTACCCCATCTGGGCCATTACTCCCACACTCAGGAACCAGACG-TTGTGGGTGAGGACATGCTGTCCCTCCTGCCAAG-TAATAACTTCCT-TCCCAGCCAGGATCCTGCCCCAAGTAGGAATATAGCTCTGCATTTACAGCAGCTCCTGCTCAGAC--CTTGTCAAAACCACCCTGCAGCTTAGGATTAAGGAGCATGGTCACAGGAAGGTGGGGTTTCAGGGCATCCCCTCAGGAACTGCCCATCTCCCCAGAATTCCAAAATGAAGGTCCATATGCTTGTAGGTGTGCTGGTCATGGTGGGCTTCACAGTAGGAAAGGGTAAGT-GGGGCCCAGGGGCAGGGAGGGAGGAAGGGGTAACTGAGTCCAG-------GAAGGGGGTGGAG-CGTGGCCATGGATAATCGGGCTTCCTACTGGCCCAGGGTATTTGAGAGTGACCCAGTGCCTCCATCCCTC----CTTCTGCCTCCCCAGTTCCTGTTCCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGACCCTTCTGTAGGATGCATTTCAGGCTCAGAGAAGTGTACCATCAGCAGCTCATCCCTGTGCATGGTGATCACCATCTATTATGGTAAATAAGGTCCCAGGAAGGGGCTGCTGGTGGGGCAGCCAATGGCTTGGTCTTCTCTCCTCTCACAAATCAGGGCTGCTCCGGGCATGGGGTACAAGAAGAGAGGAGGg s canFam2.chr12 4157291 1674 + 75515492 TTGGGAGCCACTGTCCTTAATCACTGAGCAGACTCATGGAGAAGCTGAGGTGGGGAGGTGGAAATACAGGCTGCTGACAAGGCCAGGGTAGGGCTCACCTTGCTGCCTCTCTGACCTCTACCCCTTCCCAGGCTCTACGGTTTCAAGATCCATCCAATGGCCTACCAGCTGCAGCTCCAAGCCGCCAGCAACTTCAAGAGCCCAGTCAAGACGATTCGCTGATTCCCCACCCTACCTGTCCCTCAGTCTTTGACATCTCCGATCCTTTGCTGCCACCCTTTCAGGAACCCTCTATGGTTTTTAGTTTAAATTAAAGGAGTCATTATTGTGGTGGGAATATGAAATAAAGTGGAAGAAAAGGCCATGAGCTGGTCTGCTGGTGCTTGGGGTTGGGGGACGGGAGGGTACTGCTGTGCTTCATTCCAGGGACCCTCATGGCCCAGCCCACCCTCAACG---TGAAAACCAGCACAGATTCAGATTTGTGCCCACTGGATTTGGGTGATATTCTTAGC----AGTAGAGCAGAATTTCTAGTATCAGATGTGGAGATGTGCAAGG-CACAAGGAAAAGACCCAGGGGAAGATCAGATTTCAAAAACTAGAGACCTATTTGTTCTTTTTTGGCCACCTATGGCTGTATATTTGTACTGTAAGGAGTATAGTCAACAACAAAAATCTTCCAGTTTTTATTTTACAGG-------GCCCTGGTTCTGGCAAACAGAACTCTAAGGGGTGGAGAGA----GAATGAGGTTCAGAATTGCTGCTGGGTGGTGTCTGTTCGCCCCCTGCTGGGGGAGCTAAGACATGCCCATCTCTGAAGAATGGAGATCCTAGG-TACCTGGCCAGGTTTTCCCAGCACTGTAGGGACTGGTTTTATTGAATGGGGAGAACAGCAGGTGATACCAGAGGTAGAAGCTGATCCATGGACCCTTGAGGTGTGTGAATAGATATTTTCAGGACATGAGGGACAACAATAG---CTGGATAAAG-----------GCCCAAGTGTC-CTTTGTCTGGGCCACTGTTCCCACGTTCAGGAACCCGACGCTTGTGGGTGAGGACGCACTGT-CCTCCAGCCAAGTTAATAACTTCCTCCCCCAGTCA----------------AGGAATATAGCTCTGCCCCTGCAGCAGCTCCTGCTCAAACTGTCTATCAAAACCACTCTGCAGCTCAGGATCAAGGAGCATGGTCACAGGAAGGTGGGGTTTCAGAATA-CCCCTCAGGGACTGCCCTTCTCCCCAGAATTCCATCATGAAAGCCCATATGCTTGTAGGTGTGCTGGTCATGGTGGGCTTCGCAGTGGGAAAAGGTAAGTGGGGGCCCAGGGGCAAGGAGAG----AAGGGTGAC--AGTCCTGAGAGTCTGAGAGGGGTGGGGTTGTAGCCCTGGTTCAT-GGGTTGCCTGCAAG-GCAGAGAACTTG-GAATGAGCCAACACTCCCGTCTCTCCTGTCTTCTGCTGCTGCAGCTCCTGGTCCTGAAGTCCGGACCTGCCACCTCTGCCTCTTAGAAGACCCTTCTACAGGGTGCATTTCAGGGTCAGAGAAGTGTACCATCAGCAGCACGTCACCGTGCATGGTGATCACCATCTATTATGGTAAGTCAAGCCCCAGGAAGGGGCTGCTGGTGGGATAGCCCATGGCCCAGTCTCCTTTCCTCTCCTAAATGAGGGCTGCTTAGGGCCTGTGGTACAGGAATA------GG a score=36625 s hg19.chr6_ssto_hap7 2970256 761 + 4928567 CCAGAAGAATCTTGGAAGGAGGGGTCTAAGGTTCTAGGGGGCCAGCAGAGCTCACTTTTCTAGCCTCT--TGAAGGACTCTGGGTTAGAAGTAAATTAGGTCTGGGTGAAGGATGGGAAAAGTC-------AGTAGCAGGGGTTCTTGGACTATGGGAAGCTATTGGAAGGGGTTATCAGCTTTCCCCTCTCCCTCAGATGTCAAGGTTCGCTTCATCGTTCGAGGCTGTGGACAGTACATTTCCTACCGCTGCCAAGAAAAACGCAACACCTACTTTGCAGAGTACTGGTATCAGGCCCAGTGCTGTCAGTACGATTATTGCAACTCCTGGTCAAGCCCCCAACTCCAGAGCTCTCTGCCGGAGCCCCATGACAGGCCCCTGGCCCTGCCTCTGTCTGACTCCCAGATTCAGTGGTTCTACCAGGCCCTGAACCTCTCCCTGCCCCTCCCCAATTTCCATGCTGGGACGGAGCCTGATGGCCTGGACCCCATGGTCACACTGTCCCTGAACCTGGGCTTGTCTTTTGCTGAGCTGTGCCGCATGTACTTGTTCCTCAATAGTTCAGGACTTTTGGTTCTTCCCCAGGCTGGACTCTTGACACCTCACCCTTCCTGAATTCCA---CAGTGCAAATATCTTTCTGTAACACCCTCAGCATCCTGCACTGCCCTCTCTGAAAACACCCACATTCTTTGGTCACTGTGATTTCTTAGGCCTCCG-TCTGTTGTACCACTAGCATCTATATGACTTTTGTGTAATTTTCTCTCTTGA s canFam2.chr12 4158965 754 + 75515492 ACAGCAGGATCCCGGAAGGAGGAGTCTGGGGTTTTGGGGGTTCCACTAAGCCAGTTTTTCTGACCCCTTCTGAAGGAGTCTGGGATGGAAG----TCAGGTCTTGGTGAGGGATTGGGAGAGTTTAGGGTGAGTATATCAGGTTTGGGGACTGTGGGAGAC----AGTGGGGGTTATTAGCTGTTCCCTCTTCTCCAGATACCAAGATTCGTTTCTTCATCCGAGGCTGTGGACAGTATAATTCCTACCGCTGCCAAGAAAAACGCAATACCTACTTCCCGGAGTACTGGTACCAGGCCCAGTGCTGCCAGTATGATTACTGCAACTCCTGGTCCAGCCCCCAGCTCCACAGCTCCCCTCTTGACCCCCCTGCTGGGACCTGGGGCCTGCCCCTCTCTGAGTCCCAGATCCAGTGGTTCTACCGGGCCCTGAACCTCTCGCTTCCCCTCCGCAGCTTCCATGCTGGGGGGGAGCCTGAATGCCTGGGTAACCTGGCCACCCTGCCCCTGAATCTGAGCTTATCCATTGCTGACCTGCGTCACATATATTTGTTTCTCAACAGTTCGGGACTTTTGGTTCTTCCCTGGACTAAGC-CCTGATGCCTGAGCCTT-GTGGATTTCACTCCATTACAGCATCTCTCCCCTAACACCA-CAGCTCCCTGTGCTGTCCT-----AGAACACCTACTTTCTCTG--CTCTGTGATTTCTCTGGTCTCCATTCCCCTGTATTTTCAGTGTC--TCTGGCTTTAGTGTCATTTTCTTCCTAGA a score=5461 s hg19.chr6_ssto_hap7 2971326 232 + 4928567 AGCTCTGGTGCTGTTCTTCCCCCTAGAAAAGAATCTCTAGTGTGGATTCTGCCCAGACAGGCTGACCTGAGAAAGGCACAGTGGTTCCTCCATTCCTTCCCCATCATCTGAGTGTTCCAGTATCCCCCATC--------CCTCT--CAATCCAGTCACCTGC-----CTATTGACATCTAGCTCTGTTTCCCCTGTCTTGTCCATGTCTCTAAGACCCAGTACCAGACTGAACTAGCAGCAAGAAGG s canFam2.chr12 4159719 227 + 75515492 AACTGGGATGCTG---CACCTCCTAGAAAATAAT---GAGTTCAGAGTCTGCC----CAGGCTGGCCTGGGGAAGGCACAGTGGCTTCCTGGTCCCCTTCTGGTCACCAGAGTCAGCCA-TGCCCCTCATCTTCCCAGTCCTCTGCCAATCTGGTCCCCTGCTGCCTCTGTTCAGATCTGTTTGTAGATCACATTCTACGCCTA---CCTTGAGAC------CCAGACTGAACTTGCAGTAAGAAGG a score=12765 s hg19.chr6_ssto_hap7 2971865 321 + 4928567 ATAGAATTCTGTGCAGATGTCCTGACTTGGCAATTTTGTGTCCCTGCCTCACTGTCTCCACCAACCCCCGCCTGTCC--TAGTGTTGTTCTGCCTCCTGTCCTCTCTTGCTCTCTTGTCAGTCTCTGGCTTCCTCGGCCCCATTTCACTTCACTGAGTCCTGACACCCATCTCCCTAGGGGCCTGTGAGAGGAGAGGGAAGGGTCTGTTCTGCTCAGCTCCATGTCCCCCATTTTC----------CTCCACAATAAACTGGGACTGGGCTAAAACTGTGTCACATTGTTTGTGGGGTCAGGCTCAGGTGTGGGCAGGTAAACACAGATTAAA s canFam2.chr12 4159946 323 + 75515492 GTAGACTAATGTGCACGTTTCCTTACTAGGCACTGTGGTGTCCCTGCCTCACTGTGTCTACTCCCACCTGCTTCTCTGGTCACCTTGCCCTGGTCACCTGCTTCTCTC-CTCTCGTTGCAGTCCGTGG---TCTCAGTCCCACTCCGCATCACTGAGTCCTGAAACCCGCTTCCATAGATGCC----AGGGGAGAGGAGAGGGTCCCCCCTGCTCTGCTCCACATCTCCTGCTTGTTCTCCACAAACTCCACAATAAAT--GGACTGGGCTAAGTCTGTGTCACACTGTTTATGGGGTCAGGCTCAGGTATGGGCAAGTATAGACCAGTTCAA a score=5043 s hg19.chr6_ssto_hap7 2972500 158 + 4928567 GTTAGTGAGGTTTGGGATCCAAATAGGATTGCAGAGCCCTCTCCATTGCACTTGGCGTTTGTCGCTTCCTCTCGGCCTCCT-GTAAAGGGCACACATCCCTCCCCACCCTCTGCTTAGCTGGAGATC----AAAGCATGGGGACTGTGATTCTTCCCAGCCTT s canFam2.chr12 4160269 159 + 75515492 GTTGATTGGGCATGGGGATCAAACCG---TCTACAGCCTGACCCACTCCACTTGGCCTTTGTGGCTTCCTCATGGCTTGCTCCCAAAGAGCCTATATCCAT-CCCACCTTCCACTTAGCTAGAGGTCTGTTCAGCTATGAGGATTATGACTTCTCTCAGCCTT a score=2487 s hg19.chr6_ssto_hap7 2972658 75 + 4928567 AAACATACCCTACAAAACCTGGAAAGTTAGACCCTGATGATGCCAGGTCTTTTCACCTAAGAAAAGAAACTTTAg s canFam2.chr12 4160792 71 + 75515492 AAATTTGCCCTACAAAACCTAGAAAGTTAAACCCCTTAGAT----GGCTTTTCTATCTAAGAGAGGAGGAAAAAT a score=5792 s hg19.chr6_ssto_hap7 2973335 207 + 4928567 CTTTAAACCAGAAAGACTCAGGAACTCAGAG--------CCACATGCCAGAGTTACCTGCTGCTG-GGGCCCTGGACTCCTGCCATTCCTTAGTTCTTTTCAAGGATTCTGGCATCCAGGATGCCCTCTCGAGGGGCCCAATTTGAGGGGCAAAGTGCTGAGAG---CACTGATGTTGGGCTGCAGTGGTTGGATC-TTCATGCTAATATTTTAATTTTG s canFam2.chr12 4160865 205 + 75515492 TTTTAAATCAGGAAAATTCAGGAG--CAGAGCAAACAGCCCAGGTATCTGAGTTACCTGGTACTGAGGGACCTGGCTTCTTGCC--TGCT--GTTCTTTTT-AGGATCCTGGCACCCAGAACCCCTCAGTAAGGAG------TTAGGGTGGACGTTGTTCGGTGATACACAGATG--GAGCTGCAGTGGTTAGATCTTTCATTTTAATATTTTATTTTTG a score=12172 s hg19.chr6_ssto_hap7 2973542 405 + 4928567 AAATAGTGCAAACGTATAGAAAGCAAGGATGGATA-CAACAGCCTTTtccatacactggataaacatgctggacataacgctgctctgagtcaggcttggtattgagcagcaggactcccagatgagtatagccaggtgtctgcccttccaagtcttgcagcccagtgCTTGGGTTATGAAACCTTTTTCTGAAAAGCAGTGCAGCTTTGTGGCTGGGAGGTCCAATCCCAGCCCCTCTACCACTTGGATATGTCAGTCTCTTCAGCCCCACCTTGGTCACCTGTCAAG-----TAGGGA--TAGTGCCTCAGATGATTGAGAAAACACATGTAAATGTGCATACACAAGTAGAAGTTAAGGCCTTTTCCCCCTCAAAAAAATATATTTGCCCTAGAGTCAAATGCATACACA s canFam2.chr12 4161285 340 + 75515492 AAAAAGCACAAGCATACAGAAAGCAATAATGAATATTCATAAGTTTTTCCATACAGCTGGTAAAC------------ACACTGCTGTGGG---------------------------------------CAGCCAGGTGCCTGCCATTCTGAATCTC-TAACTCAGTGCTGGGGATGTG----CTTTTTATGAAAAGTAATGCAGCTTTGTGGTTGGGAGGCCTAATCCCAGCTCCTCtgacacttgggcaagttggtttct---gcctcactttggtcacctgtcaaggatgacaggtacctggtacctcag--gattgaaagaatgcatgta---gtgtgtgtacaagtgAAAATTAGAG---------CCTCCAAAATAGATACGTGCCTTGGGGGAAAAGGTACATATG a score=15864 s hg19.chr6_ssto_hap7 2974084 554 + 4928567 Ttacttattttcaaacctttttggtaaaacattcagaagcttgcacatatcacaagatggatttttgtaaaccacacatctgtgtaaccagccaccaaatcagcgtgaagacctttacccgcagccaagcctgcctc---tgttcccctctcccaggtgctcttcccagctctg--gggtagccgctgtcctgactggtagtagcttagatgagttctgtctgtgcttgatggaaatggcatcgtacgcatctgcttttacctatatagtgttttgcacACGTGTTAACAAATCTGT-----------GTGGCCTGTACTCTGACGGAAAATACCAAACCAATGATAATTAAGTCATGAGGCAGTTGGCGTACAAAGAGAGGTACAAACCCTTAATGTGCCCCCCAACCCCCACCTTGCTAAGTCCACCCTTCTCCATGACCTCTGACGTCAGTATAAGACAGAGAAAGGCCCAGGTTTA--------TAGCAGGTCAACCTGGAAGACACCCTCAGAGGCTGAAGAACTT--GGCCCAGAATTGAAGAGACCAGGACTCCAATAAGGTCTAACATCTCT s canFam2.chr12 4161947 513 + 75515492 TGGCCGATCTTTAAACCTTTTTGGCAAAacgtacagaagcttccacatactataacttgagtttttgtaaaccacatagctgtgttaccagtcctc--gtcagtataaaggcctttatcaccacccagagcttccttgtgcatcctgtcttcccaggcacttctcccaattcagcctggttgctgttgtcctgagtaatagctgcttagaggaatttggttggcatttgatacaaatggcatcctaca-----gcatacactTACACAACATTCTGTACATATGTTAACAGAGCTTCATGGCTCCTTAATGGCCTGTGCTCTGGCAGGAAGTGCCAATATAATTTGAA--AGGTCAGGAAGAAGTTG-----------GAGGTACAAA-----------------AAC----------CTGGGTGCACCTTTCCTCATCACCTCTGACCTCAGTGT-----AGAAAGAAGTCTGGGTTTACACAACTCTAGCAAGTCAAACTAGAGGACAGTCTC--AGGCTGAGGAGCCCAAGGCCCAAAATT-------------CTGCAGTAATTTCTCACACCGTT a score=30447 s hg19.chr6_ssto_hap7 2974952 823 + 4928567 CCCACCTCCTTCTACCTGGGCCTGGTCCTTTCGCAGCCCCCTTCCCACCAACATAGCCCTCT----------AAACGCCCCT--AGCCCCCACACAGCTCT-GGTCTGACAGCACTGCCGAGGATGCCCACTAACTTTCTGGCATTCACCATA--GGAGGGCTTTCATTTCCTCTTTCTCTTTTTGTGTCTAGAGC-AAATC--ACATACCAAGGCAGGACAAGAGGACAGCTCAGCAGAGCTGGGGGTCCCTTACCTGAC-CCATGGTAGGGCAGTTAGGCAGGTGCACCTCCCTCAGCCTTCACCTCCACCAGAAGAAAGAGACATACCAAACAGTTTACACACAAATTTATTTGGGAGAAACATCCAGGGACT---------------------------AGGGGACAA--------------------GAGAGG---------------AAACCTGGTGGGCAGTAGGG-------------------------------CTGGG---GGTACAGAGTAGCAGTAAGTGTGC-TGAAGGGCGTCAACCAAGAGGAAGAGCCAAGGCTGGGGTCCAGTGGCTGGAGGGAGGCAAGGAGGGCTGGTGTGAGGGACTAGAA---GTCCTGGCCAAGC---CCAGATAGAAGTCAGGAAGGTGGCTGGAAACTGGTGGAATTTTACACCAAAGTTTGCTGCAGTCACACTAAGGAGTATAGAGCCCTCTGTTTTGAGGGTCATTGCAGAAATCCAGGAAGCAGTATTGAGAGAATATCCAGAAGCCAGACACCGGAGAAGTTCGGGTATTTGAACAATCACTCATCTGCTCCTTACTTCGGCAGTCACTCACCATGACGTCAGAACCGCTGCC-----TGGGGAGGGACAGTGGGCACCAGTGAT-ACGGA------AGTCCCCAGGAAGAGCCCCAAATCCTCTCATCCCCACACT s canFam2.chr12 4162527 923 + 75515492 TCCCCTACCCTCTGCCTGGGCCCATGCCTCT--CAGCTCCGCTCCCACCAGCATCCCTCTTTTCCTCCTGTGGACCTCCCCTCCAATCCTCACACAGCTCTGGGTTTCAC----------------CCCACTGCCCTTTTTGCCTTTACTGCGGTGTGGAGCTTCCAGTTCCTTTTCACTGTTTTGTGCCTAGAACTGAATCCAAGATGTGGAGACCAGGCAGGAGCAGAGCTCAGCAGAGC-AGGAGCCCTTTACCTGCTGCCACAGTGGGGCAGTCAGGCAGG-------ACCTCAGCCTCCACCACTACCAGAAG--AGAGACAAGCCATAGAGTTTGTACACCAATTTATTTGGGAGGAACACCTGGGGACTTGAGGCGAGACTGGCTTGTGGTGGGAGATGGGGCAAAGCCGGGCAAAGAAGCAGCTGAGAGGTGGGAGAAGAGGACAAAAGCTGTCAGACCGTGAGGACTTGAAAACTCAGACTTCTGGAGAGGGAGCCTGGGGGAGGGGCAGAGTGGGAGTCGGGGAGCTTGAGGGGTGTCAACTAAGAGA------CAGGGCTGGGGGCCAGTAACTTGAGAGAGGCAGGGAGGGCTGGTAAAAAGGATTGGAAGTTGTCCTGGCTGTGCCAGCCAACTGGAAATCAAGAAGATGGATGGCAACTGGCAGGATTTTATTCCACAAGTCTTTGCAGAAATTCTAAGGAATGTAGAAGACTCTGTTCTGAGGGTTATTGCAGAACTCCCGGAGGCAGCATCGAGAAAATATCCAGAAGCCAAACACTGGAGAAGAGCGGGTATATGAACAATCACTCATCTGCTCCTTGTGGCGGCAGTCACTCACCATGATGTCAGAACCGCTGCTGCCTGTGGGGAAGGATGGCAGCATCCAGTGATAACTGATGTCCCAGTTCCCGGGCACAGCCTCAAACCCCTCCTTCCCCTCACT a score=6367 s hg19.chr6_ssto_hap7 2975794 257 + 4928567 AAAAAGAAAAGATTCCTGTAGTTAGGCATGGGT-GGACATGCCCAGTGTTCACCAGCCATGGAACTCCACTGAAGTTCCCATGCAAGGCTGGAGGAAAAGAGCCATATGA-AATGTAATGGTTGGAGGGG---GAGTTGGGAGTTACTGAGCCAAGTGAGGAGAACTAGCACCATAGGACCATGTGAGAAAAAGCTGGGAAATGTTTT----GGAGATTGGGTGGCAGGAAGGAGGTGTATTGTTATTTATTTTTCAGACCAAAAG s canFam2.chr12 4163495 237 + 75515492 CCAAAAGGCAGATTCCTGAAACTGGGAGGGGGCAGGGAATGCCCGGGAGTCACCAGCAATGGA-------------TTCCGTGGAAGGTCGGTGGGAAAGAGCCATTCAATGGTTGGATGGTTGGAGGGGGCTGAGTAGGGTTTTGCTGAG--------GGAGAACCAGCACTTCAGGACCATCT------AAGTTGGGAGATGTATTTATCAGTGGTCAGATTGCAAAGAAATGGTGT-TTGTCA-TCATTTTATGGATCAAAAG a score=10282 s hg19.chr6_ssto_hap7 2976542 242 + 4928567 CTATGTTAAAAGGGTAGTAAGAGGACTTGAAC--------ACAGGCAGCTGCATGCAGtggttgttgagagcaccatctctggagccatcacaaattctggctcagcatctgtgagactcaggcaaggtta-tgacctttc-tgcacctgtttcctcatctgtaaaatgcacatagtaataatacctgcctcagtggattgcaagtgtttagaacagtgcctagcacatattatgtgttACGTTTTTGCTAA s canFam2.chr12 4163918 248 + 75515492 CTTTTTTTAAAGTATAATAAAAAGATTTGAGTTTTGATTTGAAggcaatttcatgcagtgaaag---agagcaccatctctgggatcaccacacattgtgactcagcttttaagagacttggccaaggtaactgaccttttgtgcttccgtttcctcatctgtaaaatggggataataacaattcctatctcagagggctgtaagtgcttagaacagtgc-tcgcatataatacatgttttgtggttgttAA a score=1635 s hg19.chr6_ssto_hap7 2976784 42 + 4928567 CTTAAGAAAGGTGGGGGG--TCGGTGGAAGAGCAGGCATCGGGA s canFam2.chr12 4164285 44 + 75515492 CAAAAGAAAAAAGGAGGGATTGTGTGGAAGAACAGGCATGGGGg a score=1265 s hg19.chr6_ssto_hap7 2976829 17 + 4928567 AGTCAATTTTCAGCGAG s canFam2.chr12 4164544 17 + 75515492 AGTAAATTTTCAGCAAG a score=12115 s hg19.chr6_ssto_hap7 2976846 433 + 4928567 ggagatgtccagtggtcaacgggatatgaggagagcggtttgacataacattcagattcagaaggaagtggtatgtggctgctggttgaagccagcaaagcagataaaatcctctgcttttgagtatatgaagtgggaagacagctaaggaccaaaccttggtgaacatgaaccactaagggtcagagagaaaacg------ctccatgaaggagactg--aagaagccgtggaggatgcaggagaagagcAACACCAGCAGTAACTG-CAGACAGATGCGGAAGCAGACAGCTTGAGGACAGGCAAGGGCACCTGGAGATCTGGAGGGTCCCC-GTCAAAGCTGCGCACC-TTGATAGGGTAGAAGCTATTCAGCTACAGATTGAGGAGAGAAGGTTAGTGGAAGTGGAGACAGAGTGTG----GCTCTGAAGAAAAGGGAAGAGAg s canFam2.chr12 4164777 395 + 75515492 GGAGCTGTCCAGAGGCCA-TTCGACATGA------CAGTTTGGCCTAACATTCAAATTCAGGAGGAAG---------------------------CAGAGCAAAT-----------CCTgtggggagagcgagcagcaagatagctaaggcccagactctggcgaacatgaaccctgaagggtcaaggagaataaggcgagacccagtgaaagagattgggaaaaagccgtggacgaggcagAG--ATGTCTGTAGCAACGGTGGCTGACAGGCAG-----GGAGAAGGCAGCCTGAGGACAGACTGGGGGACCTGGTCATCACAAGGGTCCCCCACCAAGGCTCCGTGCTGTCAGGAAGGCAGAAGCCAGTCGGTTGCAGGCTGAAGGAACAAGAG-GTTGGAAGCAGAGACAGAGAGTGAGTGGCTCTGAAGGTAAGGAAAGAGAA a score=16775 s hg19.chr6_ssto_hap7 2977565 421 + 4928567 CAGGATCGGAGCAATGTCTTATGGGATTATGGGAAC---AAGACTTGGGGTGCAGCTTAGGAGGCTGAGAGAGTTTCCGTTTGGGAGAGTGCTGGGCCCATGACAGGAGAAGGCCACTTACTGTTCTTTTTGTGGAGAGTGATGCAGCTGCTGCCAGCTGGGGTGAGGCAGATGTCAGATCCCAGAAGGCACCCTAACTCCTTGGTCTCCAAGAGGCATCGGTAGCAGCGCAGGTATTTGGGGAATGGAAGTGGTTGAGGGGGTTCCCAATTGACAGGAACAAACTTACCTAGAACACAGAGAAGTGCTGACCCCACTCACACCCCATTCTACCTCACACCCTACCACTGCCTGATTCCAGGCCACTCAGCCCCACTCCTCCCTC--CCTTCCTGTCTCAGAAAACCATCAAAGCCCCAATTCTCT s canFam2.chr12 4165173 366 + 75515492 CAATGATGGAACAGAGTCTA--GGGGTTGCAGGACCCCCAAGG--TGAGGTGCAGCC-------------GAGATGCAATTTGGTAATGGACTGAGCCAAAGGCAAG------CAGCTCACTGTTCTTTATGAGGAGAGTCATGCAGCTGCTGCCAGGCGGGGCGAGGCAGATGTCAGATCCCAGAAGGCATCCCAACTCCTTGGTCTCCAAGAGGCATCGATAGCAGCGCAGGTATTTGGGGAACTGAACTGGATGAGGGAATT---------CAGGATCAAAATTACCTAGAACACAGAGAAACACTGACTCCAAACCCACTTAGT---------------------------TTCCAGGCTCATC-GCCCCACTGTTCCCTCTATCTTCCCATCTCAGAAAACCATAAAACCACCAATTCTTT a score=16846 s hg19.chr6_ssto_hap7 2977990 359 + 4928567 CCTTCCCCAACTGCATACACATACATCCCCCTTTTCCTCTGGTCCTAAGGCCAGACCACATGTTAACAAATCCCCAGACCCAGCAGAGCACTTGGTGTTAGGCAGAGGAAAGTGCTAAACCAACACTTTGAATCCTGTGTCTCTGTGGCTGGTGCTTTGCAGCCAAGTGGG---GAGCCCAGCAGGCTGGACTCAGTCTTGTTCTATCCTGtggattc-----tggttttctcatccagcacactccct-aaccctccctattctatgttgccctcagatccagagaggattccttcagtatctctattcaggtcactgctgtgaagtgagacagccctggggtggtcactagaaatctccttcAGAg s canFam2.chr12 4166137 352 + 75515492 cccTCCCCAACCACATGTCTGTACACCTCCCTCTTC-TCTGGTTCCAGGCCCAGACCACATGTTACTGAATCCCCAGGCCCAGCGGAGCACTTGGTGCGAGGCAGATAGAG------AACAAACACTTTGAATCCTGTTTCTACATAAGTCCTGTTTTTCAGCCAAGTGAACAAGAGATTATCAGGCTCGATTGAGGCttgttctactctgtggatcccatcctggttctgtcatttagcatgttcccggaaccctccctattctgcactgccc-cacatttgaatggggttccttcagtatctc----caggtcactgctat----tgagacagccctggagtgataccaagaaatctccctcagag a score=60117 s hg19.chr6_ssto_hap7 2978670 1850 + 4928567 GCACATCAGTCCATGAGCAG-------GCATT-CCCTACCAAACCCATCTGTCCCATCTCTCCTCCTGCATGGGTTTACCTGAGCATCCTGGACAGGTGTACCCAGACACTTGGTGTCTGTGGGTTTCTCCATCCAG---GCCAGGAGACCCTTCTGAACCCTTGGAGCCACTTACCAAACACCAAGCTCATCATGACCAGCACTATTAAGAGGACCGTGTAGAGGGCTTGGGGGCTGCTGTGGAAGCACAGG------GGACCCAGACTCTGGCTCCCTGCAGGGCCTGCCATAAAACGCATGACTGCCTGCTGGCCTCCAGTTTGGG-CTTATATTGGTGGAAGAGAGGTTGGCCAAGAGGAAGGAGAGAGGCAACACCAGCTCAGGGTGGAAATCAGTGCCAGACCAGCCAGAGGGGCAGAATGTTCGCACCCACAGCCACTCTGGGGCATAACATCCTG-CTTGAGGGCAGGGGACCAGCAATAGGGGAATGAGAAAAGGAACTGTCTTTCCTattaattggacagatgtttattgaatcactgcatcagatgttggggatacaaccctgcacaaagtctccaccctcacagggcacagtctagtaggggagacaAGTCCACCAGCAATGATGTGGGGAGGGCAGAGTGCTGCCAGGAGCACCTCGACAGTTaaac-cactgaccagagggatttcggcagaggagtaacttgatcggatttctgtttataaaagattgccatggctgcacattgcatttgggtcaagagtggaggccgccgggaag-----taggacgctattcccgagtccggtcacaagatggcggactggtccggcagaagacgagcagggacga---ggaagcggggctaatgaacctgagatac--agttagaagactggacagatttgctgttggactgaacgaggggtgagggaa---caggggTAGGCTTGCACAAGGAAGTG-------GTACCATTTTCCAAGATAGGAAACATGTGGTCTGTCTCAAAAAAAAAAAAAAAAAGCAAATAGGGGGTGCCCAGTCCCACTTCTCATACCCTGGGGACACCTGTCAGACATCCTAAAACAAGGACACCTGGATCCCAAGCGATACGTACTCAGCTCAGTGCTCCCTTGGGGTTCCAGGAACCCAGCGCCTTCCCTCACCTCATCCTTTTTCCTGCCCCGCCTGTGCTCAGCTGCGGCTCAGTGGGCCTGAACTCCGGAGCCCACAGAATCTGGCGCTGGGCGTCCGCTCTCCGCGCCTGACCGCACCTCAGAACTCCGGTAGGACGGGGGGGTGGCCCCCGGCTCAAGCTCTGTTCCCTG----------GGGAAGAAACC-TGGAAAGTGCGAACCGCGCGTCGGGACCCAAGCGTCGGGCCCCAGCGGACATCCGGAGCCCGAAGCGGCTCCCCAGGAAGGCGGCGCCGTAGCGCCACTCTCCCTCCCAGGCGAATTCTGGAGACCGCGGCCCCAGGCGTCTCACCCATTTTCTCCGCTGGGG----ACCCGCTGGGCTCCCCATCCACGCCTACTCGGTCCCCACCCCACCAGCTCAGTCTTGACTCAGAAACTCAGGGTTTTTACTTTTAGGATCGTTGGGCTGTGCGTTAGGGGAGGAGGTGGTCCTCAGCGTCCTGGAACGACACCACCTGCTCCAATTTCCCGTCTGGAGGTTCTGGTCGAGGCTCCGAACTCGGGTTCCCTGCTACCT------CCCAGACTATTCAAGAATTATCCAGTCCCAGGATGATAAGGGGGAAGATGGGAAGAAACAGACGGGAGACGCCCGCCCAGAAAGAC-TGCGGGAAGAAAGAAATTCGAGAGGAAACTGCACGCCACTGAGCGCCTCCCAAAAGCCTTGGAATGAATGAATTTAAAAA s canFam2.chr12 4166490 1686 + 75515492 gaacatcagcccatcaccagtccctaggcattatcccaccaagcccatccatcccacctctcctcctgcctgggtttacctgaccatcctgGGCAGATGTACCCAGACACCTGGTGTCTGTGGGTTTCTCTATCCAGCCGACCAGGAGGTCTTTAC----------AGCCACTTACCAAACACCAAGCTCATCCTGACCAGCACTATTAAGAGGATCACGTACAGGGCTTGAGAGGTGCTGGGAAGGCACCCATACTCCGCGCCCATACTCCGGCTACCTTCAAGGCCTGCGGTAAAATGCATGACTGCCTAACAGCCTTCAGTTGGGGGCTTATATTAGTGGAAGAGAAATTGGTCAAGAGGAAGGAAACAGGTAACACCCATTTGGGGTGGAAATCAGTGCCAAAATAGCCAGAGGGACAGAGTGTCCTCACCCACGGCCACTCTAAGGCCTAACATCCTGGCTTGGGAACAGAACTCTGGCAAGAGGGGAATGGGAGGGAAA-----CTTTCATattcatcctacagaagtgtattgaatcactgtatcaggtgttggg-atacaacattgcacaagatccctgccctcgcagagca--gtctagtggggaagacaa-----caaagaataacgggggaaagg-------------ggagctcctggggcgtccaACGCACTGACCAAAGG--------------AGTGGCAAGATCATTGTTCTGTTGGTCCAAGACTgc-------------------------------ggaggccg--gggaaaccggctaggaagctattgcagggtccagtcacaagacggcagcctggtctagcggaagggaggcagggcccccccagaaatg-----aaggactccggcatccttagaaggaagactggacagatttggagttagactgaa--aatagagagggaaggtcggggataggcttgcacaaggaggtgattggtggtaccattt-ccaagatggggagaacgtgg-----------------------------------------------------------------gaCA---GTCAGAAATCCCAAAGCGAGGCCACCCCGGTGCCCAGCGA--CCTCTTCCGTCCAGGGG--CCTGTGGGCGCCGGGGAGCCCGCACCTCTCTCCTGCCCGCCCCACTCC--GCTCCGCCGAAGCTCA-CTGCAGCTCAGTGGCTCTCATCTCCG-CGCCCACAGG-CCCGGCGCCGAGCGCTCGCCCTCCGAGCTTGACTGCACTCGGGGCCCCCGGGAGGATGCGGGGGCGGCCCCCAGGCCAAGCTGCGGTCCCCGCCGGGTGGCTGGGAAGAAACCCTGGGAAGCACCGGCCG-GCGTCGG-ACCCAGGCGTGCACCCCCGACGGGCGCCCAGAACTC--CGCGGCTCCCTCGGAAGGCGGCGCTGCGGCGCTACGGAGCCCGCCCGGCG------GGAG----CGAGCGCAGGCG--------------------GGGGCGCAGCCGGCCGGGCTCCTCCACC-TGCCGGTTCACCGCCTGCCGCTCCAGGTCAGT---GTCTCGGAGACTCGGGGTTTGCACGTTAAGGGGTGCAGAGCTCTG-------GGAAGAGCTGG------GAGTACAGGAGCGA-ACCGCCTGCTCCCGTTGCCAGTCTGGGGCTTCGGGCTGCGGCCCTGCGGGAGGGAGCGCTGCCTCCTTACAGTCCCGGACCAGCCCAGAGCCCCCCGGCCTCGGGGACCTGATGGGGACGATGGGAAGAGATGGACGG-AGACTCGCGCCAAGGAAGACGCTCGGCAAAGAAGAAACACGGAAGGAAA--GCACACCACTGCGC---TTCCAGGAGCCTTGGGATGTACGAAGGAAGAAA a score=1560 s hg19.chr6_ssto_hap7 2980984 100 + 4928567 GAAAAGCCAGAGTAGTGGAGAACTGCAGAGGAACGCGGGGCACCTACATAAATGTCTTGAATGAATGAGTGCACAGAGTGATAGACAAAAAGAATCAGAG s canFam2.chr12 4168188 84 + 75515492 GAAACTCAAGAGTAATGAAGA--CGGGGAGGAGCGCCTGGCAGCAGCCTAAATGC--GGACTGAACGACTG-GTAGAG-----------GAGAATCCGCG a score=6356 s hg19.chr6_ssto_hap7 2981392 866 + 4928567 CCAGGGCTCCTCTTGAAGCGAAGAGGGCAAAGGGCAAAGGGGAAGCACAGGGGAACTTCGCGGCGCCCTCTGAAGCTCCCTCTCGAATATAATCGCAACGAAAAGGCCAACGACTAGAGGCTTTGCGAGGCTGAGGCTGGGCTTCGGG---AGGGGATTGCCCTGAGAGGTCCGGGAGGACTTGCTGTGGAATTCAAGCGACCGTGGGCCTTGAGGGAACCGGGGGGCAAGACACCCACCCAGCATTCG-CGGAATATTTCCTCGAATTATTTCGGGGAGGGGTGAGGCCGGGGCAGGGTGGGGCCTTCTTCGGAGGGGGCGCGGCCTCCGAGTAATTAATCCCGTCTT----TGTTGCGTTTTGCTCCTCTCCTGTCCACCCAGCAGGGCCAGCCCAGGGCGCGCTAAGAGTCCAGAGAGTTCGTTTCCATGGTGACGGGTTCCGCGAAGGTTTTCCTGGGGTGAAGAGGCAGGGCGTTGAATAATCGCCATGGCGACAGCAGCAGATGACGGTGTCCCTTCTGAGTGCTCCTACCTAGAGTTAAGGGATACCTGAGGGTAAGCAACCGAGTGACGAAACAAAGAAGGCGGGGCCTGAGGACAGAACGCCAAGGTTAGGGGAATGGAGCCAGGCAAACGAGGGGCGGGGCTGTAGATGACCCGGTCGGGAGAGGGCCACGGTTTGTTGGGGGAGCGGCTCGAGATTGCGTTCTAGAGAGGAACCAGAGAGAGGGTCTTTAACCTAAATATAAATGAATGA------------CTGGATTCCTGAAGAATCCGGAATGGCTTGTTGATtggatagatggatggatggatggacggacggacggaccgatggatggaAATCTGGCTATCACTGACGCCTGAGCTCCC s canFam2.chr12 4168272 629 + 75515492 CC--GGCTCCTCTTGGAGCGAAG--------GGGCCCAGGGCAGCCAGGAGGGAGTTTCACAGAGTCCTCGGAACCCCTTTCTGGAACACAATCGCCGCTGAAGGTCCCAGCTCTCGGGAGTTAG---GGATAAG--TGAGCTGCGCGCCCACGGAGTCACCCTGAGGAGTTAGAGA-----------------CCCGAGGCCGAGCGC------GGAGCCGGAGGA----ACACGCGGCTGGTGTTcggcgg-------------------ccgggggggggc----ccggAGCCGTGT--------CCTCCGGCAGCGCGTGGCCTCAGGGCCGTCCGCGCCGCTCCGGCCTGTTCCGTGCTGTTCCCC------CGGCTCCGCGCGCAGAGCCCCGTGTGt-cggtggcctcggtggcctcggtggcctcgTGACCCTTGCGGAGGCGGCCTTCCCGGGGTGCGGAGGCGGGGCGCTG--------CTGTGGC---------------------------CGCGTG-----------------GGGACGCCGGCGGG-----GCCCGAGGGGCCGAGCGAGGGAGGTGGGGCCTGAGGACCGAAGGCCGAGGTCGGGCG-------------------GCGGCGGGACAGCAG-----------------GGGC-------------GGGAGCGGCT----------------GGAGGAGC---------GATCTTTAGCCCGAACGCAAATGAATGAAAAAAGGACGGACTCGGTTCCCGAGGGAGTTGGGATGGCCCGTTGA------------------------GCGGGCGGACGGGGCAGAGG----------------------TGCCCGGCCTCCC a score=21743 s hg19.chr6_ssto_hap7 2982333 667 + 4928567 GGAGCAAACCCTCAACCCAAACAGGCAGCACAGAGCCAG-TCCAGCACCTCACACTGGAGGCACTCAGGGTGGAGCCCAGGTCGATGAGACGGCGTAGGATGAGGCTTTTTGGCCCAGC-TGGGAACCACTTCTTTCCAGATTTCCCGTCCAGAGTCTAACTTTCCTTTCTCCCAGCGCCATCTTTTC-TGCTAGTTTGCCCAGCTCCTCAGGG-TGCCTGGACTTTCAGGCCTCACCTTGTGTC----CAGTATAGCAGGGTCCAGCGCCCCAGCAACTGGGAAGGTCTGCATCTCTGCTGATCATCCCCTGGAACTGCTGGAACTTTGCTATATAGGGTGAGGAGTGGACAGGGGCCTGCTTCCACCCC--TGGGTGGGGATTAGTTCTGAAAACAAACACAGCTGCTCTGAACCTTATTGCATAGGGAGTAATCT---GAAGTAGGCTGAGGCCCCTGGATGG--GGGGGTTCAGAATTCACATGTTGAGCCTACCTTTCTTTCCCTACCCAATTTCAGGTATCTAAGGGCCCCTCAGGTCATCCACTGTTGTCTACAATTACATGCAGTAAGATGGGGGA------AAGTGGCAGTAGGGGCAGTTCAGCAGAGTCC-------CTAATGGCCATGTCCAGGGAGGGGTGTCCTTTGTCCCCAGGGTATGGGAGGTGAGACTGGGCACCCC s canFam2.chr12 4168939 635 + 75515492 ggAGCAAATCCTCGGCCCTGACGCCGAGTCCAGAGCCCGCTCCCGCAGCTCCC--------------GGGGGGACCCTGGCCCTGGGAGACGGGGAGGGATGGGG---GACAGCCCAGCGCGGGGCCCACCATTTCCCAGGTTTCCCG--------CTAATTTTTTTTTGTCCCAGCCCCCCCCCCCCCTTCCAGTGTGCCCAGCTCCTCGGGGACGCCTGGCCGTCTGGGCCTT-CCTTATCCCTCCCCTGTAAGGCAAGGTCCAAAGCCCCAGCAGATGTGC-GGTCTGCATCTCAGCTGTTCTTTTCCGAAATCTG--------------TATAGGGTGAGGAGTGGACAGGCAGCTGGTCCCACTCTGATGGGTG--------TTCTGAAAACAAACAC--CCGATGTGAGATTTATCAGGTGGGGCGTAATTTAAGGAGGTAGACTGAGGCCCATGGGTGGAGGGGGGTCCAGGATTCAAATGTTAA----ACCTCCCCTCTCCTCACCAACTTCCAATATCCAAGGGTTCCTCATGCTATCCACTGTTCTTTATAGT-ATGTGCAGGAAGAAGGGGGGTGGGGGGAGTGGTGGTAGAGGCAGGTCAACAGAGTCCAGAGTCCCTAGTAGCC-TGGTCAGGGAGAG---TCCTTTGTCTCCAGGGTGTGGAAGGTGGGTCCAGGTGCCCC a score=20367 s hg19.chr6_ssto_hap7 2983313 476 + 4928567 CTCTTTGCATTTAAGGAGCTTCCCTTAGCTGAACAAAAATTTAGTTTTCAGGGGATTAACTC----TTCTGTTGGATCTGGGAGGATGGGATTCAGAACTGTGCAGCTGGCTCCAGAGCTTCATGTTCCACACTTCCCATCGTTTGCCCCCCTGGAAT-GGGATAGAGGAGAG-GGCACCAGTATCAGCTATCCACCTGTTTGCTAACGGTGGAGCATTATGGAGCTGTGGTCACCTGCCTCTTCTAACTCCAAATTTCAGGCATCACATCACCTGATTAAGTCTCAGATCTCCACTTCCAGTGGAGACTCAGTATATCTTCCCTTAAGGAGTTGCAGCGCTAATGGGGGCACACACAGCCTCTGCCCTGGGGTTTCAAGAAGAGCTTCATGCACTGGGTTTGGAGAAGACACAGAAATTTAGCCAGAGACTCCATCTAGGACATTAGAACATT----GTCGCCCACGTTAAGTATCTTGCTCAAA s canFam2.chr12 4169574 470 + 75515492 CTATTTGCATTCAAGGAGGTGG--TTAACTGAACAGA--CTTGTTTTCCAAGGGAATAACTAAGTGTTCTGGTGGATCAGGGAGGGTGAGGTTCAGAACCATGCAGCTGGTCCTATAGCTTCATGCTCCACACTTTGCACCCTGTTCACACCAAGGACAGGGACAGAGGAATGCAGTGCCAGTATCAACTCTCCAG-TATTTGCTAAAGGTAGAGCATTCTGGAGCTGTGGCCACCT-CCTCTTTTAACCCCAAGTACCAGGTATCGTATCACCTGAC-AAGTCTCCGATCACT-CTTCCAGTGAAGACTTGGAATGCCCCTGCCTAAGGAGCTGCTGAGCTGGTGTGGGCAGACA--GCCTCTGCCCCAGAGACTGCAGAGAAGCCTCATGCCCTGGGGTTCCAGGAGACACTCAAGTT-AGCCAGAGGC--CATCTAGGACATCAGAGCATTATTAGTGGCCCATGTTAAG---CCTGTTCAAA a score=1590 s hg19.chr6_ssto_hap7 2984368 104 + 4928567 CCCCaacaaaataaaacaaaacaaaacaaaaATGGACTCAGGGCGATAAACTTTGGGGTCTTTCATCTGGAAAAGAGAAGTTTCCAAATGAAGAAAGTGGCCAG s canFam2.chr12 4170044 75 + 75515492 CCCTGGTA--------------------------GACCAAGGGGCACATATGTGGGGGAGTTTCATCTAGAAAAGGG--GTTTTCAAA-GGGGAAGGTGGTCAG a score=2799 s hg19.chr6_ssto_hap7 2984780 101 + 4928567 GCAACAAACCAATGGgtggaagagggatttattcactgtgttccacaaggtccaaag-ttagagatagatggcagttatagggaaccaatttcctcaggtac s canFam2.chr12 4170119 97 + 75515492 GCAACATACAGATGGGTGGAAGTAAGGCCCATTC----TGTTCCATGAAATCCAAGGATCGGCAATCACAGAGAATTAGGGGAAACCGATT-CCTCAGNNNN a score=102653 s hg19.chr6_ssto_hap7 2984967 2144 + 4928567 TCCCTGGCAGGGCCTGTGTTTGTTGAACTGCAAAAAGGCTGTGAGGACAGAGACTTGATGACATGGCAAGGTGGGTGTGCAGGGTTTGCT-GCATAAGACGTGGGGAGCAGGCCCTTCCTCACTCTTCACCAA----------GATAACAAGAGGTGAGCAATGAAAATTGGGGGTACTGCTAGTAACACCATGCAGG-TTGAACCTGGAAACCAGCAGAAG--CACTGGGTAGGTGAAATCGGATCCTAGAA------------------AGCTCATG-AGCCGTAAGCAGGAGGGGGCAACCATGGGCTCCTGGGGTGGTTG------TATGCAGGAAGAACTGAAGAAGGAGGCGGGAGGGGCCAGGGAGGCTGCACAGTTGTGATAACAGTAGGCACATCAGGGACCGGGGAGGTTTGGGGACCTGCTGCCTGAGGAAAGCTCAGGTTAGGGGCTGAAGGCCTAGGGGGACACAGAG-ATGGGAAGGGTTAGATTAGCTAGATTGTCTAGAGTTAGGGTTTCCCAAAGCCCAGCTCTTTGGGGCCTCTGCTCTCCCCACTACCTGCCCCTGGCTCCC-TGGACACTTGAGAAGTTATACAATTAGCCAGATAGTAGAAAAAATACCTTTTTATTAATTATTAGGAATAATCCATTCATGTAATGCAGGATGTATGTTGGAGAAGGTTAAGTACAGCCACATGAATGAGGGGAAACGTGCAAGAGGAACAGTGGTGAGAAGGGGGATGGTCCCCCACTTTCCACAAACTATAAACAGCAACATGAACACAGAGAATCACAAATAAGAGGGTCTTTCCTCATGTCTCCTCTCACCCCATTCTTCCATAATGAGTCCCAGT-TGGTCCCTAGAGGTGCCAGGGCATCTGGAAGTTCTGGGCTGGGAGTGGGGTGCAGTGAGTGGCCTCAAAGTTGTGCAGATGCTTCCGAGCCTGAGGAAAGGAGGTGGGACAGGTG-------GGGTACAGAGCAC-TGTTGGGAGGGGCAGCCACTGGACTCCCTCCCCACCCTCCACTTCCGCATCCACCACCCACTCTACAAAAGCTGCCACTTCCAATGCTTATAGGGTATCCCCAGTCCCCCTATGTGAGCCCTGGCCATTCAAGAACCCTTCCCACTTCCCACTCCTTAGCTCACCAGAAACAAAGCCAGCTGCCGCCGTCCATCTGCACTCATGTCCTCCCCTGCAGAGAGGAGGCGCTCAAA-ATAGGCCACACATCTGGGTATTCATCCCCTTCCTAGGCCCTTCCC--ACCCTCTCTCCTGCCCCAGGAGCTCCTTACCCACGCTCCAGGGGAAGTCAGGCCCGTGTTCTGCCTGGTAGGAGCGGAGGACAGACAGACACCAGTCCTCTTCCACCTCCCATCGGCTATAAATTGAGGCTG-------------GTCAGGGAGAGAGATGACAGCCAGTCAGCAACCTGACCTTGCTGGGCCCCCGCCCCAAG-CCTCACTGGATCCC-TTCTCACCTTCCTCCAGCTGTGAGGAGGCCTCCAACCACTGCCTCACCACTCGAAGACCCTCCTCTGCCATCACCCGGGGATACCTACGGAGGAAGTGCCAGGAC---AGGTCAGGGC----------TGATTTTTTTTCATTCACCATCCCTGAACCTT------CCTCCCTCCTTCC------CTGTGCTGGTATCAGTATCTGTGTGTGTACACTGCCCCCAGCGCGCACACACCCTGGCTCTCACCGATGCTGCAGGAGCTTCAGCAGGAGGTCATTGCCTCGGTTGGACATGATGTCCTCAGGAACCCTGGGGGTGAGAAGAATGTACCCTGGAGGGGCTGGAGGTTAGG-AGGAAGGGTCTAGATACCCAGGTTTCTGGTGGGCAGAGGTAGAAGGGACAAGTTCCTGGCCATCTCTGGGGTTCCTGAGGGCCGAGATTCCCACGCACGCACTCACGTGGTGGTGATGATCTCATCCTTGGTTCTCCGGATCAGCAGTACAGGACCCTGGTATCTTCAGAGAACAGAGCAGTGGGAAGGGAGAGCTCAGAGGGAGACGGGTGACAACTGGCCCACCC--CTATCCCTGCACTGGTAGCATTCTTACCCTCCCCTTGCTATAGCACAGCCCTTGACCTAGCCCTTCACTCAGGGGTGAGAGGGGATTATTTAAGGGGCATGGTTCAG--TCTGGCCCTGCTGggagacccctgccgtgccaggccttaaccctttgg s canFam2.chr12 4170370 2113 + 75515492 TCCCTGGCAGGGCCTGT---TGTTAGACTGCAACC--GATGTGTGAAGAGAGGTTTGATGACACTG------AGGTGTGCAGGGTTTGCTTGCATGAGACGTGGGGAGTGGGCTGATCTTCACCACCCCCCCACGCCCCAGGGAATAGCAAGAGCTGAGCAAGGAACCCTGCGGACACTGATGGTGAAGCCATGTGGGGTTGAATCTGGAAATCTGTAGAAGATTCTCAAGTAGGGGAAACCAGGTACTAGAAGACACTGTGTAAGTGACAAACCCATGGAGTTGTAAGCAA-AGGGGGCAACCGTGAGTTCCTGGGGTGGCAGCAGGGTTACACAGGAAGGACTG----------TGTTGCAGCCTGGGGAGGCTGTAC-GTGGTGATACTACTAGACACACCAGCAAACGGGGAGGCCTGGGGACCCACCACGTGCAGACAGATCGGCTTGGGGGCTGCAGGCCTAGGGGAACAGTGAGGATGAGGAGGGTTACATTGGCTGGTT------GGGGTTGGGTTGCCCAAAGCACGGCCTTCTGTGGCTTCAGCTGTCCCCACTCCCAGCTCCAGGCTCCTGTGGACATCTGGGAAGTCAAACAATTAACCAGCCTGTAGAAAAAATACCTTTTTATTAATTATTAGGAATAATCCATTCATTGAATGCAGGATGTGTATTGGGGAAGGTTAGGTACTGCCAGATGGCTGAGGGGAAACGTGCAAGAGG----GCAGTGAGAAGGGGGACAGTCCCCACCTTTCCACAAACTATAAACAGCAACACGAACACAGAGAATCACAAATACGAGGATCCTTCCTCACATCTCCCTCCATCCCACTCTTTCAAAACAAGTGCCAGTGTGGTCGCTAGAGGTGCCAGGGCATCTGGAAGTTCTGGGCCGGGAGCGGGGTGCAATGTGTGGCCTCGAAGTTGTGCAGATGCTTCTGAGCCTGAAGAAAGAGCGCAGGATGGGGACGGGGGAGGGTGCGTAGAACATGCAGTGAGCAGCAGCCACCAATCGCCCCCGT--------------GAAACCACCACATGTTCTCTACGAGCTGCCACTTCCAACGCT--------GTCCTCAAGCCCCACAGGTGCCCCCTGGCCATCCCAGCACCCC-----CTTCCT--------GCTCACCAGAAACAAGGCCAGCTGCTGTCGTCCATCTGCGTTCATGTCTTCCCCTGCAGAGGGG-GGTGCTCACACATGGGCTGCACATCTGGGTATTGGGCCCCCCC---GGCCCCTCCCCAAAACCCTATCCTGCCCCAGGCCCTCCTTACCCACACTCCAGGGAAAGTCAGGCCCACGCTCTGCCTGGTAGGAGCGGAGGACGGACAGGCACCAGTCCTCCTCCACCTCCCAACGGCTGAAAATCGAGGCTGCTGGGGGAGTGGGGGCAGGGAGGGAAGAGGCA-CTTGTCAGCCACCTGGCCTTGCCAGGGCCCCACCCAAAGGCCTCACCGCATCCTACTCGCACCTTCCTCCAGCTGTGAGGAGGCCTCCAGCCACTGCCTCACCACTCGAAGACCCTCCTCTGCCATCACACAGGGATACCTACAGGGGGAGCACCGGGGTGGGAGGTCAGGACCCCGTTCTCTTCAGTTCTCTTCACTCCTCATCCCTAACCCTCTAACTCCCCACCCCCTGCCGCAAGGCGGTGCTGGTGTCAGCACACATATGTA----------------CACACACACCCTGGCTC--ACCGATACTGCAGGAGCTTCAGCAGGAGGTCGTTGCCTCGGTTGGACATGATGTCCTCTGGAACCCTGGGGGTGGGAGGAATATGCACTGGAAGGGCTGGAGGTTGGGGAGGAAGGGTTTGGATACCTGGGTTTCTGGCGGGCAGAGGTGGGTGGGGCAACTTCCTAGCTCTGTCTGGGATCCAGGAGGGCAGAGGCTCCTAGGCAC----TCACGTGGTAGTGATGATCTCATCCTTGGTTCTTCGGATCAGCAGCACAGGGCCCTGGTACCTTCAGAGGACAGCGTGGTGGGA-GGGAGTGCTCAGAGGGGGACAGGTGACAAGTGGCCACCCCGCCTGTCTTGTCCCTG--------CCTTCCCAGCCCCTACTAAGCAGGGGCCCAGGAGCTAGCCCATCACTCAGGGGAGAGAAAATATTGAAGAATAGGCACTGCCCAAACTCTGATCTTACTGG-------------------------ATCTTCTGG a score=38822 s hg19.chr6_ssto_hap7 2987248 728 + 4928567 agcgcccagcagagc-tgtaTGGGGGGCAGG----------TGTTCAATGCCGGACGCTGGCCGGCCCTCACCTGCACAGCTGCTCCGCGTTGTTTAGATTGAGATGCTGCCTCACGGTCCTGGTCACCAGGCCCCCTAGAGTGGGATAAAGGTGAAGGGATGGCAGAGACAAAGCCCTTGCCCAACATAAAGGTCCTCACTATTCACGGAGAAAGAAAACTGAGGCCCCCAGACAAAGGAGTCCTCCTGCTTC-CAACAATGGGGCGACTTACTCCCCACCCAAGAAAAGGGAGCCATCTCAGAACAGTTCCCAGTTCCAGCCCA-----CCCCTTCCCAGGAAGGGCAGGCCTGGGAGCTGCACTCACTCCAGCTGTCTGGCATGACCTTCAAGGCCAAGGGCACCAGGTCATCAAAGGAGGCATCCAGGATCATGGCACTAACATCTGGGTAGGACATGGCTGCCCACGTGGCTGGTACCAGGGCAGGGAAGAAGAGTAAGAACTGAGAAAGGCTCCTTTCTCCCCACCACCCATGCTCTCATCCCACTGACCCTATAGGCCAACCCCATTCCCC---CTATGTTATCCCTTGTTTTTTTCTTAACCT---ACTTCACTTGGTTAGGGAACTATCTGGAGAGGATGGGGATAGAACACTGGAGATAGTGCACTGAAGATAATGGGCA--GGAAACATTCACTTTCCCTGATCTCCCCACCCAGGACCTGGGTCTGCTTTTCCTTTTAATG s canFam2.chr12 4172483 709 + 75515492 AACACCCGGCAGAGCCTGTACAGTGGGGAGGCGGGAAAGGGTGTTTCATGCTAGAGGCAGGCCTGCCCTCACCTGCACAGCTGTTCTGCGTTGTTTAGATTGAGATGCTGCCTCACAGTCCTGGTCACCAGGCCCCCTGCAGCGAGATAAAAGTGAAGGGATAACAAAGACAAAGCCCTTGCCCAACATAATGGTCCCCACTGTCCACAGAAAGAGAAAACTAAGG-CTCCAGACACGGGAGCCCTCCTGCTTCTCAACAACGGTGTGACCCACTCCCCATCCATCTCCAG---------TCAAGATAGCTCCCAGTTCCAGCCCCCGCCTCCCCTTCCCTGGAA-GGCAGGCCTGGGAGCTTCACTCACTCCAGCTATCTGGCATGACCTTCAAGGCCAAGGGCACCAGGTCATCGAAGGAGGCATCCAGGATCACGGCACTAATGTCTGGGTAGGACATGGCTGCCCACGTGGCTGGGATCAAGACAGGGAAGAAGGGTGACATCCTTGG-------CCTCCTGTCCACTGCCC-CACCCTCATCCCACTGACCCTGCAGGCTGACGCCATGCTCCTGACTAGGTGAGCCCCTG-GTCTCCCTCAACCTCTCACTTCACTTGGCCAGGGCTCTATCTGGAGAGGAT---------------------GTGCATGGGAGACAATGTGCAGGGGAAAGACTCACTTT-CCTGATCCCCC--TCCAGGACCCTGGTTTACTTCTTTTAATAATG a score=124957 s hg19.chr6_ssto_hap7 2987976 2868 + 4928567 ACTGGGCACAAGAGGGGAAGGAAAGGTGAAGTGTATGCAAATAGGATAGCTTCTTCCAGGCCCACTCAGAGATTCTACTTCCTCTCTCTTCTTCCTTGAGCCTCCACCCCAC--------------CCCATTTCCCCACCTCTCCC--GGGTGGGGCTGGGTGGTCATGAATGTGTCTACAGTGGGGGATGGGAGGGAGGCTGGTACCAGTGAAGCCGCCGATGGACCAGGCGTAGATGATGATGTCCTGGGGCTGGAAGCCCAGGCGGTGGATGGCAAACTGGACCACCACATCCATGGCATTAGCCTCATTCTGCGGGAATGGCACCCCCTGCAGGAGAAAGGGCAAAGTCAGGAGTGTGTCAGCAC--------CAAAGGCCAGCTCACCTGTCCCTCCCAACGTGGA--CCCCTCCTGCAG------------------------------------CCACCTATGACAGGCAGAGAAGGTGTAGAAGGAAGGGATGGTAGGAGAGGTTGTTCTCTCCAGAAGACGGATGTGTACAATGAGATCTACCTCCTCCTCTCCTGCTAGCCCCGCACTG-TGGGGATGGGGGCATGGCTCCCAATGCTGCCTTCACAACCTCCTAGACCCCAGCCCTCAGGTGAGTGGGAGGCCTTCAAGAAATCCACAGCCCCTCTCCTCCCTCCAATGGCTGACCAGAG-GGAAACAGA-CATAATTCAGGAAAAGGAAGGGATTCCTGAGATGGTCTCACCGTGCTTCCAGCAAAGCCTGGATGATTCCAGCCCAGGACTGAATATCCAGCTGTAACACAGGGGGAGGAGGGACTGAGACCTTGTGGCCCACA--GCCCTTTCTCCATCCCTGGGGGAAGGAAGAGCAGAAGTACC--------------CCCCAGCTTAGATGCAAATAACTCCAAGCCTTCCCAGAAATAGGAGATGACACCAGAGGTTCTGAGGCAGCA-CAGGGAGCAGCATGTGATTGTGTGGGGTGTGTGGTGGGGGAATGGAACAGAATGAAAAGCATAATAGCTAGGGACACAGGCC-AGGGGAGGGATGTAAGGTTATCAAAGCAAATGGCGAGTGGACTTTTCCCTAAAGCTGAGAGACTCAAAACCTCACCCAGAGAAAGCAG--AGGCCAGGGGAGGTCAGGTCAGTGTGGG-AGGCAGGGACATTCCCTTTCAAAGGGCGGAGATAAGGAGGCTGAGTCACCGTCCTACCTTCCAGGGGCGTGGAGACGCAGCCCACCTCATAAAACCCAGCATTCCCCTCACAGCAGATCACCTA-GGAAGGAGGCAGGAAGGAAGGGCTGG---GGGGCCAAGTTGGGACTGAAAAACTCCCTTTGGGCAGGGAGGGCAGCCCATGAAGAGCTTTGCAGGGAAGAGGAAAGGGCAGGTTTCTGTTTTCTCCAAGGGGAATGGAAGCTTCTCATTCCACAGGGTCCATAAGAGGAGAAGCAAAGGGATTACAAATACT-------------CCTCAGAGGCTG----ACCTGCTCGACCACCCAGCCATGT-----CTTTTCCTTGGAAGATTACCAGCTGGATCTCTTTCAGGAAGGGGACTATGGAGATGTTTTTCCTTTCTCGTTTTCGGGTCTGTTATCTTCTGTGACCATTGCTATTGTGTGGTATGCTGATTGCTCTCCCTATCCCTCTCTGAGCTCCAGTCTTAT--GGTCAGATAAACTGTAATGCCATGGCGCCCCaagctgaaacccacgaatggtgggatttgcatgaactctcataacagatgggcagagccaggactagaacccagctccctagactcctggcttagcgctctttccacggcTGCTTCATGGAGGTAGGAgacttt-gaggccaggctgcctgggtccaaataccagctctaccacttactgtgaggtccaggaaaggttttctgtgccccagtttcatctcctgtaaaatgggctaatat--aagcagtacctatctcacgggattcttttgagaattaaatatatatgcttcatatatatatgagaattaaatatatataagtgtgaagtgctgtcaaagtggtaactat--taatattAGTTTCTCGTCCTTGAACGTC-TCTCCTACTTCATCTGTTTCTCTATCACAGGGTTTCACTACATCACAAGGTCTTTAGCGTGGAGCTAGGACATGAGATTATCCCCAGTAGTGGTTCCTTCAGGGAGGTGCTATAGCATTGGGGTCCCCAGA-CCTCTACTGCCTTCCTCACACTCACCCCACCTCTGGGCTCTCTGCTCCCTCTTACCAGCTTCTGTCCCTGGGGCTCAGCTGTCCCCCGCCGGTCCACAAACATGGTGTCAATCTCATTGCCATCACAGGCCAGCAGCTTTGCCCGGCGCCCATTACACTGAGTACGGAAGACGCAATGGCCAAGATGCAAGGGTCAGGAGGCCACATCACAGGGGTGGGGCGGGGTGGGTGGGGGTGAGAGGGGAGGGCTTTAGGGGATGTGCGGGCAGGGAAGCCTCACCTCTTCCACCAGTCGGGCCTGGCCCTGCAGCAGCACAGGCATGAGGGCCTTCTGCAGCAGGTACACAGAGCCTGGATACAGCATCCGGCGCCCTAGGGTGTGCGCCACCAGGTAGCTGTGGGGAACAC-AGGTTAACAAACCC-CAACCCTGGTGAGGCCTGGGGACTGTGCTGGGGACCATCCCAGCCCTAGCACTCACAGACTGTAAGGCCTGCTTTACCCCTGACCTTCACAGCTTTACTTTCCTCTTTCAAGCCTTAATGAAA-----TATGTACCAGGCTagtgttttgcaaac----ttttcttactgcaacctttgtaagataaacattttatattgtggctcagtgcacacatatcctgtatgtacagaattctgagagttttatgaTGTAACTGTCTATACATAATAAGTAAATGCAAAGTTATCATCAGATTATGATTCTGTTAAAATATAAGTA s canFam2.chr12 4173394 2784 + 75515492 aatGGGCATAAGAGTGGAAGGAAATGC-AAATATGCACAAACAGGATACCATCTTCTAGACCCACATAGATAACCCACCTCTATCATCTCTTCCCTTAAGCCTTGACCCCACTATCAGGCCCCTAGTACATTTCCCTACCTCACCTGGGGGTGGGGTGGGGGTGGCGCAAAT-----TGTGGGGGTGGTTAGGAGGTAGGCTAATACCAGTGAAGCCGCCAATGGACCAGGCATAGATGATGATGTCCTGGGGCTGGAAGCCCAGGCGGTAGATGGCAAACTGCACCACCACATCCATGGCATTGGCCTCATTCTGAGGAAATGGCACCCCCTGCAGGAGGAAGGGCAAAGGCAGGAGTGGTTCAGCACAAAGGGGGCGAGGGCCAG---ACCcccccacccccacctccacccccCTCTTGCAAGCCTGTTGCTTGCTTGCTGTGGTGTGGACTCTTAGCTCCCCTGCAACAGCCAGGGA--GTGCAGAAGAAAAGCATGGTGGGAGGGGCTGCACTCTCCAGAAAGCAG--------------------------CCTGCCTGC-AACTCCCCACTGCCAGAGGAGGGAACCTGGGTCCCTGTCCT---------------TGGCGCCCAGGTGACAGGTGAGTGGGAGACCCCC-AGAAATATATACCCCTTTCTCTAACTCCAGTGACTGACCAGGGAGGAGACACACCATAATTCAGGAAAAGAAAGGGATTTC--AGAGGGTCTCACCGTGCTTCCAGCAAAGCCTGGATGGTTCCAGCCCAGGACTGAATATCCAGCTGCAACAGTGGGGGAGGAG---CTAGGACCTCATGACCCACACCTCCCCTACTCCAGCCCAGGGGGAAAGAGCAACAGAA-CACTGGAGCTCTAAACAACCCAAACTCAGAGGCGAATAACCCCAAGCCTTCCCAGAATGAGGCGAGGACACCAGAGGTTCTGAGGCAGCAGAAGGGAGAGATACGTGACTGTGTAGTG----------------GGGACAGAATGAAGGCCAACAT-GTTAGGGACACAGCCCAAGGGGAGGGATGTAAGGTTAGCAAAGCAAATGGGGAGTACACTCTCCCCCAAATGTGAGG---TTTAAACTTCACACAGACAAGGCGATCAGGCCCAGGGAGGTTATGTCAGTGTGGGAAGGTAGAGGCTTTCCATTCCAAAGGGCAG-GACAAGAGAGCTGAGCC-CAGGCCTACCTTCCAGAGGCGTAGAAATGCAGCCCACCTCATAGAAGCCCGCGTTCCCCTCACAGCAGATCACCTATGGAGGGAGGCAGGA--GGAGGGCTGGGGAGGAGCCAAGCTGGGCCAGAAAATCCCCCATGTGGCTAGAGG----------TAGGAGCTTTGTAGGGTAGAGGAATGGGC------CTGTTCTCTTTAAGGAGAATGGAAATTTCTCTTTTCACAAGGTTCATCAGA-GAGAAGCAAAGTGGATGCAAATGCTTAGCAAACTGAGCCCTCAGAGGAGGGGGAAGTTGGTCAACCACCCAGCACAGTGTCCACTTCTCCTTGGAAGACCAGTGG-GGGCTCGCTTTCAGAAATGGGGTTAGGGATACTTTTTTCCTTTCTAGTTTTTGGCTCTATCTTTGCCCATGAGTGTTTCTTCTGTGTGGTATGCCAACTGCTT------TCCATCTCTGGGCTCCAGACTTATACAGTCAGATAAACACTAATTCTATGGTACCCCaag------cccagagatagggtggcttgcatggactctcacagcagttgggtagagccaagaccagaagccagctccctagactgctggctcagtgctccttccagggctgcttcCTGGAGGCAGGCTGctttggagaccaggctgcccaggttcaaatcccagctct--catttactgtgtcatctgggaaaacgattctgggcctcagttttaatatctgtaaaatgggctgacataaaaatagtacctattctacagggttgtggtgaggattaaatATATGCCTTCTAT---------------------------GTGATAAATGCT----ACGTGGTGACTGTCACAAGATTGTTTTTTGGTCCTTGTATGTTACCTCTTGCTTCCTCCATTTTGCTATGGCAGGGTTTTCTGACACCAAGAGGTCTTGAGGGTGGGGCCAGGAGATGGGCTTTTCTCCAGCTGTCCTTCTTT---GGGGTTGCTGGAGGACTGGGATCCCCAGAGCCTCCACTGCTTCCCTCTC-----CCCGACCTGTGAATTCCTGGCTCCCACTCACCAGCTTCTGTCCCTGGGGCTCTGATGTCTCCCGCCGGTCCACAAACATGGTGTCAATCTCGTTGCCATCGCAGGCCAGCAGCTTCGCCCGGCGCCCATTACACTAAGTGAGG--------------GAGATGTGAGGAGTGGGAAGTCACATCCC--TGGTGGGGGGAGGAGCATCGGGGCGCAA-----------------------GGGCAGGGGCGCCTCACCTCTTCCACCAGCCGGGCCTGGCCCTGCAGCAGCACAGGCATGAGGGCCTTCTGGAGCAGGTACACTGAGCCGGGATACAGCATCCGGCGCCCCAAGGTGTGTGCCACCAAGTAGCTGTGGGGAACTCAAGGTTAACAAACCCTTGACCTCAGGGGGGC------------CCAGGGACCACCCCAGCCCTTGCACCCAGAGGTTCTGGGGCCTGATGCACCCTTGACCTTCACATTTTTGTTTTCTTTTTAGAAGATTTAACAAAATGCTGTATGGACCAGACTGGTGTTTTCCCAACTTTTtttttttactacagcctttctaagatgcacattttatactgtggcccagtacacgcat---ttgtacatat--aatactgaaaatttcaggaaataatatttTCTACGTAA-AAGTAAAAGCAAAGTTATTA----ACTATGATTCTCTTAATGTATAAATA a score=3377 s hg19.chr6_ssto_hap7 2990844 54 + 4928567 CAACATATTAAAGGTCCCCAAATAAATAATGCTTTAAAAAATGATGGTTATAAT s canFam2.chr12 4176631 54 + 75515492 CAACTTATTAAAAGTCCCCAAGTAAATAATACTTAAATAAACAACAGCTATAAT a score=20282 s hg19.chr6_ssto_hap7 2990898 487 + 4928567 TCAAAACCTCAAATATGGCTTGCCTCCCTGACTAATTAGCACACTGTCAACAACCAACCACTAAGTCCACCCTGTTCCTTGGTATTCTAGAAGCTGCCTCCTAACTCCCAGCAAAAGAAAATTCCCA--GTGTCTGTTCCACTATAAGATATAGGTGGTTATTTCCGTTCCTTCTGACATCATCAGTACCCACGACTGAGCtttatttgggatttaccatgtgctctcaagcacccaggcaaggcaggagcccttcagaacatgttaccttacttaatctcctcagcaaccttgcagggcaggttcatcacaggtgcagacactgaggcacacaggggcccggagccaaggtggaataacaacagggcagaggggccacgatgggtacacagatgctaccagagcctgccctagctacaagtgtgtgtcctccccacccccaccccaccccCACTGCTCCTTTTCAGCCTCACTGAAGGAGCTTTTGTT s canFam2.chr12 4177444 467 + 75515492 TCAAAACTGCAAATCTGGCTTGCCCCTCTGACCAATCAGCATTCTGTAGACA-CCGACCACTAAGCCCTCCCCTTTCTTCGGTATTCCAGAAACTGCGTCCCAGGCCACAGCAACAGAAAATTCCCACGACATCTGCACCACGGTAAGATATGGATGATTACTGCTGCTACTTCCAACACCATCCGTGTCCACAACTATGATTTACTTGGGCTTTGCCATATGCTCTCAGGCACCCAGGCAAGGTAGAAGGCTTTGTGAAGATGTTACTACACTTAATCTCGCCA---ATCCTATGAAGTGGGTTAATCATGGACACAGAGATTGCAG-------------GTCGCTAAGGTAGGATAGCCTAGGAGCAGAGGGGCCAAGACAGGGATA--GCTGCCACCAGACCCTGCTCCAGCTAAGGCTATGTGTCTCCACCACACCT---CCAACCTCATTCTTCCCTCCCAGCCTGGTTAACAGAGCTTCTGTg a score=4206 s hg19.chr6_ssto_hap7 2991387 86 + 4928567 TATCCCAGTTCTTTACTTACTACATTTGAGACTCCAGACCTCTCTGAGCCTCTTTTCTTCAAACATAAATATGGAT-AAAAATGACT s canFam2.chr12 4178077 87 + 75515492 catcccagtctttcattcactgtctatgagactctggagctctctgggcctcttttcttcacctataaaTCTAGATTAAAAACCACA a score=46481 s hg19.chr6_ssto_hap7 2991473 1170 + 4928567 TTGCCATAAATGATCTACACAAACCATACAGCACTAGGCCCAATGAGTGACAGCTATTTTACAATGGAGCGCCCACTCCCAGAGCACTC---CTGAAATGGCCCCTCCACCCCAGTGGGCCTCTCCTCGCTGCTGTTTCCCACCTGGTGATCTGACAAGGCAGCTTCTTAACCCGGTTGAGGAGGGTGTCTGCTGTCCCCCGGTGCAGGGGCTCTGGGCGAAGCAGGGCCACACCCCGGCGGGAAGGGCCCCCTCGAGACTCCTTCCTGAGGAAGGGAAAGATGCAGGGAAGGATAGGGTCAGGAGCAGCAAGCTGGATGTCTGAGGTCTGGAGAACAGTGGGG---------TCTAGGAACGACATAATGGCATTGGAAGGCAGGCACTGTGACCTGAGAGGGCATGGAGGTGGGAGGGCAGAGCAGAGATTTTCTGGAATGGTTCTAAGGGGAGAGATACAGCAAAAGAACTGGGGCCTCACCGGCTGCTGGGTTCTTCCCAGTGGAAGTCGACTGGCCAGCTCCGGAAGTCAAAGTTGTAGTTGGCAAGCTGCCTCTGCAGTGGGCACG-AGAGGCAAAGGGGTACTGAGAACTCAGGGGAGGCTCTCCTACCCACCCTCAACAACACCTTCGTTATCCAGGGGTCTGATCCCCACACATCATGGGGAAACCAAGCGGAGGTCAATACCCTC----CCAATTCTCAGATGGAAAATTCTAACAGGACCAGAAAATCAGGGGAGATGGTATGCCCCATCAGGTATCAGGACTGGCCTGTCTGCCCTCTTCCAAGCTAAGAACCTAACACTC--TGCTTTTCTAAAAAACTAAGTCTGACCCACCCCCAGGAGGAGTGGCTGAAGGTGCTAGTGCTTTTGAGTGACGGGTAGTAGGGGTC-GCTGGCTGGTCACGGTCTATTCCCCACCTGGGTCCCTTATAGGGTGCTGTCTTAGAAGCTTAGAAATCTCCCAGCAGATCACACTGACAGACCCAAGGTTGAGTGAGACAGAGAGGAGGGAAGTCACGCCCACAGTGGGCTCCTCTGCCATGTGGGGCCACCCGTTGAAGGAAGCTCTGACT------TCCATCCTCACAACTACATCCCTTCC-TCAACTCCTGCAGCCATGGATCAGTGTTGCCCTACAGCCCATCCGAACCTCGGGCCACCCCACTGAGCCAGTCCACATGC s canFam2.chr12 4178337 1021 + 75515492 CTACCACAAATAAT----ACAAACTACGCAGCACAAGGCCC-------------TATCTTGCAAGGGAGCACCCTGTCCTGGAATCCTCACTCCGAA---TCACCTCCATCCCAGCTGGCCTCTCTTCCCTGTTGCTTCCCACCTGGTGATCTGACAAGGCAGCTTCTTGACCCGGTTGAGGAGGGTGTCTGCTGTCCCCCGGTGCAGGGGCTCTGGGCGGAGCAGGGCCACACCTTGGTAAGAAGGGCCCCCTCGAGACTCCTTCCTGAGGA-TGGAAAGATGCAGGGGAGGACAG--TCAGGAGCAGCAAGCTGAACAGCGGAGGTCTGCAGGAGAGGGGGGAGGATGCTGTCTAGGAACAAGGAGATGGTGCTGGAGAGCAGCCCCTGGGGCCCAAGATGG--------GGACAGGACAGAGCAGGGAT-----GGAATG-----------------------AGAGAACTGGGACCTCACCGGCTGCTGGGCTCTTTCCAGTGGAAGTCGACCGGCCAGCTCTTAAAGTCAAAGTTGTAGTTGGCGAGCTGCCTCTGTGGTGGGCAAGGAGAGGTAAAGAGGAACTGAAAAGTTGGGGCAGGC-CACCTACCCACCCTAATCAGC------------CATGGGACTGGCCCCCACACGTCATGGGGAGAC-AAGGAGAGGTCAACACCCCCATACTCCCTTCTCAGAGTGAAGA-------------AAAAAATCAGCCAAGAGAGGATGCCTT------TATCAG-------CTATCCAGCTGCTTCCAG-----------AACACTCCTTGCTTTCCCAAAATA-TAAAACTGACCCACTCCCAAAAGGGATGGCTGTAGGTACTGGTGCTTCTGAGGGA--GGAAGTGGGGGTCTGTTGGCTGTTCATGCCCCCCTCCCCTACTGGGTCCCTGATACAATGCTGTCCTGGAGG---------------------------------------GCTGAGTGAGATGGAT-GGAGGGAAGTCATGCCTACAGTGG-CTCCTTCGC-AT-TGGGCCCACCTCTTGAATGAGGCCCTCTCTCACTGTTCCATCCTTATGGCCACCTTCCTTCCCTCAACTTCTGCAGCCA--------------------GACCATCTATGCCTCCAGTCACCCCACCGAGCCCATCCACATGC a score=1587 s hg19.chr6_ssto_hap7 2992948 25 + 4928567 TTTTTGACGGCAGTGGGAGCTGTGt s canFam2.chr12 4179358 25 + 75515492 TTTGTGAGGGTGGCGGGAGCTGTGT a score=17300 s hg19.chr6_ssto_hap7 2993315 342 + 4928567 CCCCCACCCCCTGAGCTCCTAGCACTCTATTTTGAG----GGTTTTTATTTTCTG-CACAGAAATTTTTTGACATTT-CAAAAATAATTTGACTAACAGAGAGCAATAGAAAAATTATACAAAAAGGTAAATGGCAAAACAAAACAAGATGACTAAAAGCAAATTTCAGGCAGGCTTTGCTcagacctgctctcaaatctggacttagccactttctt-gctctatgactccgaatgggtcacttaacctctttttgcctctgttttctcacatttacaaataaaggtaataatgccacctcactcagctgttgtgaggatcagaaagggtgtgtgccaaatgcttcag s canFam2.chr12 4179402 327 + 75515492 CCCTCACCCTCGAAGCACCTGGCACTCTATCTTGAGAACTGTTTTTTATTTTCCGTCACAGAAATTTTTTGACATTTTCAAAAATAACTTGACTAAGAGAGAACAATAGAAACACTGTACAAAAATGTAAATGGCAAAACAAGACAAAATGAAGAAAAGCACATTTCAGGCAGCTTCTGCTcagaccctgactcagatccagacccagccacttcctttgctctgt---tcc-------tcacttaatcttcctttg--tctgtttcctcagaggtacaa----------taataccacctcatgcaattgttgtgaagactgggaagggcatatgcaaaatgcctCAG a score=5728 s hg19.chr6_ssto_hap7 2993675 120 + 4928567 gcatcattacgcagctccataG-TGTGG----AGTAGCCAGGAATGTGATGATGGTGGTCATAGCTGTTTGATCCTAGAAACCTCCCA--TAACAGAAAAGAGCTTTATGGGGCCCCAAAGCCCATC s canFam2.chr12 4179934 127 + 75515492 GCATCATCGCATAGCTCTGCAAATGCGGCCAGAGCAGCCAGTAACATGATGATGGCGGTCACAGATCTCTGATCCCAGGAACCCCTTTGTTAACAGGAAAGAGCTATATAGGGCCCTAAAGCCCCTt a score=13821 s hg19.chr6_ssto_hap7 2993796 230 + 4928567 TCAAAGATAATCACAGTCCAGCACCAGCCGGCTTGGCATAATTCCCAAGACACTGAGCCCTAGCTTTTCTCCCTCCTGGCACCATGCTGTACTCCCAGGCATAGGAGTGGACACACCTGTCCACCTTGTCCCATCCACAAACAAGGATAGCATGGTATTCAATGCATACAACAAAATTAAACA---TTTATAGAACTGAGCTGCTGTGATACAGAGAAAACTACCTTCTAAGA s canFam2.chr12 4180192 229 + 75515492 TGAAAGACAATCACACTCCAGCACCAGCTGAGCTGGCACAACTCCAAGGACACTGTGCCCTGGCTTTTCTCCCTCTTGGCACCACATTGTGCTTCCAGGCACAAGAGTGGACATACCTGTCCATCTTGTCCCATCCCTGAACAAAACTAGCATGGTGTGCGATGCACACGGCCAAAATAAACAACATTTACAGAACTGAGCTGCTCGGA----GAGAAGACCCCCTTCTAAAA a score=30927 s hg19.chr6_ssto_hap7 2995323 528 + 4928567 AATATTCCATTAGAAGTGGTAGGGAGGAAAAATTCCTCAGGTGGACAGTTCACTAATGGAGGTGAGAAGGGATACAGCAATGTGCAAGCAAACACCCAGTGTGGTGGGTGGTAAAACACACCTCCTCTTCCTG--CAGAAGCCAGTGTCTGGTGCTCTGAGG-GACAACTGAGAAAGCTGCTATT-GGGTGCCTGTGTGGCACTTTTCCTAGGGCCTCTCACCTTGTTTTCTGAAGACTGGTTCCGATGTGTTGCTTCCAAGATGGTGATGAACTGCCGGTACTGGGGGTTGGTCCAGCGGCCAATGCCTGGTAGAAAAAGGACAGGAAACAGTGCTAGGAAAACTGGGAAGCAGAAAGCC---TAGGTTTTAGGAAAAGAATTGGAGATGGGCTAGAAGAAGGCCCTGTAAGAAAAAGTGAAAGAAAAAGGAACTGAGGGCATAGGATGCGGAGAAATAGATG---TGAGCCAACCCCCTTCCTCCAAATCCAGCAACTGGCTACAGGACGCTTCTTCTCCCTAGCTTCTGCAGTTT s canFam2.chr12 4180429 533 + 75515492 AATATTCTGTTAGAAGTGGTGGGGAGGAAGA-TTCCTTGGGTAGATGGTTTCCTCACACAGAGGAGGAGGGACATAGCAATATGCAAGCAAAAAGCCAGGGTGTTGGATGGCAAAACACACTGCCTCCCCCAGGACAGAAGCTGGTGCCCGGTGCTCTGGGGAGGCAGCTGAGGAAGCTGCTACCAGGGTACCTGTCTGGCACCTTTCCTGGAAACGCTCACCTTGTTTTCTGCAGACTGGTTCCTATGTGTTGCCTCCAAGATAGTGATGAACTGCCGGTACTGGGGGTTGGTCCAGCGGCCAATACCTGGTAGAAAGAGGACAGGAAACAGTGTTAGGAAAAGTGGGAAG-AGCAAGCTGAGTGGGTTTCAGGAAGAGGGTTGGAGATGGGCAAGGAAAAGGCCCTGGAAAGAGAAGCAGGAGGAAAAGGAACAGATGGCCCAGGATCTGGGGAAACAGGAGAGTCGGGCTGACCCCCTTCCTCCATATCTAGCAACTGGCTTCA---TACTTCTCCTATCCAGCTTCTTCAGTTG a score=35553 s hg19.chr6_ssto_hap7 2995851 1217 + 4928567 GTGTCTTTATAGACAATCCTTAACCTACCATCTTCCAGAATGTTCCTCTTCCTCAGTCTTTAAACAC-TGTCATATAACCTATTAAATGACACTATTAAACACTATCATATAATACTATTCTCCCTTGCGAATATCAAATTTCTCTATTTTTCACTGCCACTCTTCTCCAATGTTTGCTTTCTGCCTCTTTTCTGTATATTCTAGCCCCTTGCCATCTGGCTTCAGAGTCTCCGACTCCTGCCC-ATAATTACTTCCTCACTGAATTCCTGA-----CTCTTCTATCCTCATTCTCTTCAACTGTACTACTCAGCATTCTCCCTGTCCCTCAAGATTCTTCCTGCCTCTGCTTCCTGGGCCCATCCTTGACTCCTTCCAGTTCCTGAACAGTTCCTCTCCTGCCTCCTTTCTGCTTTCCTTTCTGAAGCAGAAGCAACTCTCAGTGCTGACTCTCTCTCCTCTCTCTTTTCACTTACACAGTCAGTGATTGCATCCACTCTCCTTTCACTGCTGAGCCACCTCAAACCCTAACTTCTCTCCT--cactgacttggcaggtgtcgtgtgtcagacaggcaccgtactacacacgggagactcagcaggaaatgagatacacagctcctggctctcagagagctggcattctggtt-ggggttaggtacagccaggagaagacaataaacaa-----------catttcagagagggataagtgctacagagaaaatacaacaAgaatgaaccagaa---ctttatgtgtcatcaatggtattcccccaaaacgatatgatga----------gagaatgatgtgtgctgcagaatgatttgtacaacatttatgccaaaaatgtaaaatgtgcaaaataa----tacatactgcttatagataccatatttcatagattctaaaatgtatatttt-ttaacccttgaaaactctgaaattagaattcattttacaattgatggcagcttaGACTTGAGGAACTGAGGTATATGTTTCATAAAAGTATGTGC---CAGAAAAAAAAAAAAACCCacaccaaatgacaattattacttctgaggaaagaggaagatgggactgaa-aggattccaatgggaactccaaccctaactgtggtgctttaGTATTTTGTTGACAGAAAGCATTTAAAGCAAATATCACAAAACTATATATAAAAAAAAAATCACAAAACTATACATCAAAAAATTTAAAAAGGCTTTTATATTTTGTTCTCTGGAC s canFam2.chr12 4181157 1125 + 75515492 GTTTCTTGATAGGCGAT---TGACTTCCCACCCTCCAGAATGTTCACTTTCC-CGGTCTTACTACAAGCGTCATGCAACCT--------------------------------TACTATTCACCCTGGTGAACATGGG-----------TTTCCCTGCCAGCATTCTCTGCTGCTCGCTTCCCAGCTCTTTTCTGTATGGTCTAACTCCCGGCCATCTGGCTCCCTGG-CTCCCCCTCTTGCCCCAGAATCACTTCCTCACTGA--CACTGAGCCCCTTCCTCCATCCCCACTCT-TCCTACGGTGCCTCTCAGCACTCTTCCTCTCCCTCCAGACTCCATCCTCCTCTGCTTCCTGGGTCCATCTTTGCCACCTTCCGAGTCCCAGAC---TTCTCTCCCCCACCCCCCCCACCTCCCTTTT----------ACTTCTCGGAGAGCTACCCTTC---------------------------CGGAAATCACATCTGCTCCCTCTTCACTGTAAAGGAGTCTCAAGCCCTGACTTCTCTGCTTCCACTAATCTGATAGGTATCACTCacatgccaggcaccattctg-acacgaaga---cagtaggaaatgagacacacaggctccagccct--gagagctggtactttggcccggggtggggtggggctggagaaagagaagaagcaagtacacaagaacttttcagggaggggtaagtgctataaagaaaataaaaccagaatgaactagaaggCTAGTATCTATCATCAGGAGTAGAGACCCCAGACAGTACTGCGAACAAAGCAACGAGCAAAATGAATTGTGTGGAATGATGC------CGTTTGTGCCAAAAATGTAAAACTCACAAAGAAAAGGTGATATATTATTTATACTTCccatacttcatagattctaaaatgtctattttatttacatttgaaaact--gaaatcggaatgcattttacaattcataacagcttagatttggtaagatgaggcatatctttcataagagtatacaaaTATGGAACCAGGAAAGAAACTACGCCAAGTGGCACTGGTTAGTTCTGGGAAAAGAGGAACACGGGACTGGGGAAGATTCCAATGGGAATGTCAACTCTGAATGCAATGCTTCAGTATTTTATTGATAAAAGGTATTTGAAGCAA-TATCACAGAAC----------ACAAGCATTTCAGTTCTTTATGATACTGTATTTAA-------------------TTTCTGTAC a score=1767 s hg19.chr6_ssto_hap7 2997266 22 + 4928567 CTAAATTaaaaataaataaaat s canFam2.chr12 4182282 22 + 75515492 CCAAACtaaaaataaataaaat a score=17744 s hg19.chr6_ssto_hap7 2997288 432 + 4928567 aaaaaactaagacaaaactgagcagtgggagctacttttagacagggtggtcagggaaggcctctctgaggagagagcccagccctgcagagatcagggggcAGAACACCTCAGGCAGAAGGTCCTGGACCC----AACTGTGACCATCCAGCCCTGACCCCACCACCCCCATGTTGAAGCATCGCCCATCACCTGGTTGTCATCTTATGTACCCACTAGGGGTAGGTGATCTG--TCCtctttatttttttaaattgcgagatacaacatatgtacataaaacatatattcagtttaaaaaatacaaagcaaacattcatgtgactatcacctaggtcaacaaagagaacacagccacctctcagcagggctctcccccactctgttctcccccaccccaggtaatcactctcctaacttttgagaaaagcatgccc s canFam2.chr12 4182506 418 + 75515492 aaaaaagtaaggcaaaactgaggagtgggagctacttttagaccgggcactcagggaaggcctcgctgagggggGAGCCCAGAGCATGGGGGATCAGGAGGCAGAACACCGCAGGCAGAAGGTCCGCACCCCTGACCACTGCCACCACCCACCC---ACCCGCCCACCCTCTAGAC-AGGCATC--CCCTCGCCCAGTTTTTGTCACGTGCACTCGCCAAGGGGCAATGATTTGAACCATCTCTTCATTTTTAAATCATGAGCTATAACATACACACCTGCAACa------cagtttaaaagatacaaagcaaacattcatgtgaccatcacgcaagtcaaggaagcgaacatggtcacgtcccccca--------cacagccccgaccgtccctctcccaggttatcactcccctgactttcaagatagtcacgcct a score=4160 s hg19.chr6_ssto_hap7 2998052 124 + 4928567 gtgttctacctcaaacatgcacatcccttttgaattttatataaatgaaaacatactgcatacattattttgtggttagcttcttctatttaacacaacatttgagaaattcatctgcattgCt s canFam2.chr12 4182924 121 + 75515492 gtattctgctaccgacatatgcatcccttgtgaactttacgtgagtgggaacaaaccacatacggtttctggaagtctgctccttgcattcaaccttacagttgtgagacccgttc---ttgct a score=2685 s hg19.chr6_ssto_hap7 2998656 60 + 4928567 gttgagcgtagctacagtttgttcatttgcattgctatatagtgttctcttgcatggcta s canFam2.chr12 4183045 59 + 75515492 gctgagcgtagtttaaattcgctcacttgcat-gctgtgttgtgttgtgttgcacaacta a score=4739 s hg19.chr6_ssto_hap7 2999028 186 + 4928567 acatattttatccatcctactatttgtagccactggagttgtttccagcttaggattattacaaacaatgttgtatgctgtattcttgtacatctatattgtttatacatgtgcaggagttttcctagtatgtatacatatatagaattgttgtagggtatatgcatcttttctagataaAAGCAg s canFam2.chr12 4183112 118 + 75515492 acatat-----ccatccta---tttgtggcca-tggacttgtttccagtttcagattatgacaaaca-------------------------tctacatgg----------------------------------acatGTATGGAATTATTGTAGGGTATATGCATCTTCTTCAGATAACAGCAG a score=144928 s hg19.chr6_ssto_hap7 2999352 2930 + 4928567 TTTGTTACTTTTCAGTAATTTTTT-ATATTTATAACCCAAGTCTTTTAAGGAAAAGATCATGCCTTAAACCATTCTCAATGATTCCCTCTCGGAGGCCCATCACTAAAATGTATTTGCACAAGGTACTTAATTTTTAACCAGTGACAGTGACAGATA-AGATTCAAACCAGGTTTCCTCTCCACCTACCTCGGAGGCAGGCCACACCTGCCAGAAGTAGCAGCAATGTCCCAGCATAGTGAGAAAACGGCACCACTTTGGACAAACTCAAGTAACCTGGGAAGGGAGAGGGACAATGTGAGACCCTCTCCGCAATGTCCCTCAGCTCCTCTTCCCAGTTCAGCCCCAACCTCCACCCCACACTCCCTGTTTGGAACAGCCATACCCTAAGAGGAAGAAGATGCCTGATGGAAGAGGGAAGCCAAGCCATCTTCACAGGTCCCCTCTCCTCTTTAGGGAG-CTGGCTCATCTGCCAACAACCTGCCCATTTGCTACCCCACCACCTTTGAAACCACACTGACCTTTCCTGTACAAGTAGAAGAAGGCGAAGGGAGAGGAGTAATAAGAGATGGACCAGAATACTGAAGCCTGCAGCAGAGAGACAGGGACAGGCAATCAATACACACACACACACAC--------------------------------------------CTGCCATT-CCAGGCATATACTATACACTCTGAGCAAGATGGACAACCTGAGGGATATCA----TATCA------TATTTGGTGTATGACACCATGAATACAGTAGGTGCTCAGTATTTGTTGAAAAGTAGTGTGTCAATGTA--ATGGAGGCTGGGAAAATTTGGTACAGGCTCTATTTTCTTCCTCTGGAATTATGGAAGAATTATGTCTTCCATCTCCAGACATAATTCCATCACATTTAAAGGC-AGTCTCTCTGTCTACTCAAGTTAATCAAGCCTTTTCAATTGGCCCTGCTCAGGACAGCCCCTGGCCTGGTCCCCAAGAGATGCGCAAACGTCACCACAGGAACTGTGCCAGAAAGAACAGCTGTCCCTGCAGCCAAAGAGGTTAGTTGCC-------AGGGAGGACAGGTCACTGGGGAACTGCAGGACTTAGCACCTGCAGATGGTCCCAAGAGTAAACATGTTTTCCTTACGGCTCAGGTTGCCCCCAGAGAAAGCAGTGCTACATACCAAAGGGGAGTGCCAAGTATGCACATTT-AGAGTGTGCCTGTGTGTCTGTGTTGGAGAGGTCTGCTGCAGAGCCCAGGGCATCCCCCAACCCCAGGGCACTGT-TGCTCCCAAGTTAGGGAGGGCTAAGTTCAAGAGGACAGGTGGGTCTGAAA-GATGCAG-AGTCCCAGATGCCAGGGTAGACATACCAGTGCCAGGATGCTGTCAGCATGTTTCTCCAGGGCACGGGGCTGATAGTACGTATCCTGCCAAAACAGATGGCCTCCTTAAGGACCCTGCCCACTGGCAGGTCCTTTCCCTTCCCTTTCAGAAGCCCTGCTGT-GTGTCCTCTGGTTCTAGTCTCGTTGACTATCTCTCTTGAAACATCCCTGGCCCCCACAGAAACTCCTCTTCCTCACCCTCACTCTGAACCTAATTTCCCACCCCTGACCATGGGAACAAACACAGGGAGCTGGATTTGGAAGCAAAAGTGAAAGCAGCATTGGACGATTTTTGCTCCTTTTCCACAGCCTAGTTTCAAATGGATTGCAGGCGCGTGCATGTGGGGAGAAGGGTTAGTTTGAGAAGAAAGAAAAGACACCTAGACAA-TCTAAGAAGGAAAGAAAAGCATCAGAAATAAGAGTAGTTGACTAAG-AAGAGAATGTGGGTAGGAGCGGGCAGTTTGTAGGAGACAGTAACACAATGAGACAACTGATAAAAAGGAAGAGAATATTTAGA---ACAGCCTACCACCACCCGCCAGCTCTCCAGAATACAATGACTC--GGGTCTCCAGGCTAGGTTGGGCGGGGGTTGAGGGGAGGACCGACGGATACAGGATCTGTAAAAGTCATTCTGAAATTCAAGGCGAGGGTAAAGGGAAGATAAAAACAGAGCCGGGGGAGGCATGAAGAGGCACTGAAGAAGAGGAAACTGGGAGTCTGACAGCAAAATTCAACGGCTCCCCAGTCCGCGCAGGGTCTCTTCCCGGGACTCAAGACTCAACTGGGACCGGCACGAACCACGACACACAGGGTCGGGGGGACGCGGAGAGGAAAGAACAAAGAGTGGCAGTCGGAATGAGAAAGCGGTA---AAGAGCGAAAAAGAAAGGAGGCGGCCAGTCCGTAGGCGTGACTTTAACTCAGGAAGCACACAGAGCGCAGATTTTGCGGATAACTGGCTTGACAAGCAGGCTCCCCTTATTTCCCATTATGGGCACTTCTGGGGAGCAAAAGGCCGTAAAGGGTTTGGACTGTACCACGTTCTTCGGTGGGGAGGAACTCGACTCACCCAGGAGCTGGAATGGGGGGCAGTGACTGCCGTTGGCGTCTCAGGGACGCTGGCCGGGGCCCTTTCAGAGTCCCTCTCCCGGTAGATTTTGTAGAGCCGGGGGCCTAGGACGCAGCTCAGCAGCTTCGCCATGGCCCCGGCTCGGGCCGCTGCTCTTCCAGCAGCAGGTCCCCCTGCCGGCCCCGCCCT--CCCTGCCTCTGAGGTGTTGTGTGCCCTTGACGTCAGCCCGTACCGGCTCCGCCTCCGGGCGAGTTGCGACATTTTCAGTGCTTCCTGAGAAGAGTTTCGCGCAGTTGGAGCTACGGGTACAGCAGTGGTCCGAAACTAGTGGAAGACCACTAGAACGCGGAGAATCAGAAAATTACCGGGCATGGTTCAATAATTTTTTTCTGTCTCAT--TATTGGCAGACTCTAGAGCGACAGCGGAAACGAGGGGtgagattaggagtacttgataagagtaaccgaaaacataaggtgtctaggaatgtatctagtacaagaaatgcaaggttttatgaagaaaactataaaaagtt s canFam2.chr12 4183230 2841 + 75515492 TTTTCTGCCAATGAGTGTTTTTTTCATACTTACAACC-AAGCCCTTTAAGGAAAAGATCACGTCTTCA-CCATTCCCAATTATTCCCTTTCAGGGCCCAAACC-----ATATATTTGCA-AAATTACTTAAT----AAATATTTACCCCGGGAAATATAGATCCAAGCCAGGCTCCCTCTGGACCTACCTCGGAGACAGGCCACGCCTGCCAAGAGTAGTAGCAATGTCCCCGCATAGTGAGAAAATGGCACCACTTTGGACAAGCTCAAGTAACCTGGGAGGGGAGAGGCATTATGTGAGAAATT-TCCCCACTGCCCCTTGGCATCTCTTCCCAGGTCAGGCCCAATTTCCGCCCCATATTCTCTCTTTGGGACATCCATGCCCTTGGAGGAAGAAGACGCCTGATGGAAGAGGAAAGCCAAGCCATGTCCGTAGGTTCCCTTTCCTCTTTGGAGAGGTTGGCTCATCTGCCAACAACCTGCCCA------------CCACCTTTGAAGCCACACTGACCTTTCCTGTATAAGTAGAAGAAGGCGAAGGGAGAGGAGTAATAAGAGATGGACCAGAAGACTGAAGCCTGCAGCAGAGAGACAGGGACAAGCAATCAGTacacatgcacacacatgcacatatgtgcacacatgtacacgcacgcacccacacacaAGTCTGCCATTTCCAGGCCTAGGCT-------CTGAGCAAAGTGGAGGACCTGAGGGAGATCAATCACATCAAGTACCTATTCTGTGGATGACAC---------AGTAGGTGCTTAATATCTGTTGAAAGGCAATGTATCAGAGCAGAAAGGAGGCTGGGGAAATTAGGTACAGGTTCTGTTTTCTTCCTCT-------------------------TATCTCCAGACATAATCTCATCGCTTTTAAAGGCCAGTTTCTTTTTCTACTCAAGTCAATCAAACCTTTCCAATCAGCCCTGCTCAGCACAGCGCCTGGCCTGGTCTCCAAGAGATGCACAAACGTCACCATAGGAACCCTGCCAGAGAAAACAGCTGTCTTTGCAGCCAAGGAGGTTAGTTGCCTGTAGCCAGGGAGGACAGGTCACTGGGGA-CCACAGGACTCAGCACTTGCAGATGGTCCCAAGGGGAAACGCATTCTCCTCAGGGCTCAGGCTGCCCC-AGAGAAAGCAGTGC-ACACACCAAGGTGGAGTGCCAAGTATGGGTGCTTGAGAGTGGGTCCATGTG-----GTTGGAGAGGTTGGCAGCAGAGGCTGGAGCATTCCCCACCCCAGGGGCGCTGCCTTCTCCCATGCTAGGGAGGAGAAAGTTCC-GAGGGCAACTGGGTGGGAAAAGACACAGTAGTCCCAGATGCGAGGGCAGACATACCAGTGCCAGGATGCTGTCAGCATGCTTCTCCAAGGCACGGGGTTGATAGTACGTATCCTGCCAAAACAGATGGCGGAGTCAAGGACCATGTCCACTGACCAGTCCTTCGCCTTCCCTTTTGAAAGCCCTGACGTTGTGTCCTCTGGTTCTAGCCTCTGAAGCTGTCCCTCCTGCGACATTCCTGGCTCCCAAAGAAATCCCTCTTACTAACCCCTCCTCCAAGCCTGATTTCCTACCCCAGACCATGA----AAACATAGGAGGCCGGACTTGGGAGCAAAATTGAAAGCCTCACCGAAGGATTTGTGTTCCTTTTTCACAACCCAGTTTCAAATGGGCCGTGGGCAGGTGCAAACGGGGAGAGGAGTGAG----AGAAGAAAGGAAAGACACAATGACAACTTTAAGAGGGAAATAAGA---TCAGAAATAACAG--GGTGATTAAGGAAGAGAATGTGGCAGAGGGCGGGCCGTCCCGGGGCGCAATCAACAGCTTGAGACTACCCGTGAAAAGGCAGAGCGCCTACAGGGACACAGCCGCCCACCACCC--CAGCTTTCCCTAATGTGACCACCCTGGGGTCTCCAAGGCTGGCTGGGCGGCGG--GGTGGGAGGCC--GCGCGTACGTGACTTGTCGAAGCCATCT--AACTTCACGGACAGTGTGGAAGGCAGATAAAA-CGGAACTGGGGAAGGCA----------CCGAGTCAGAAGAAAT-----------CACC---------CAGCTCTGGAATTGGCGCAGGGTCTC---------------AGGCAATTGGGAGTAGCACGAACCACGACAGACGGGGT--GGGGGCCGCG-AGAGGGAAAGGCGAGGAGCGCTAGTGGGAACCGGAAAGCGGTGGCGAAGAGCGACAGAG----GAGGCCGGCGATCCGCGGGCGTGACTTTAACCCAGGAGGCGCAGGGAGCGC----TCCGCAGACACCTGGCTCGACAAGCAGGCTCCCCCGATTTCCAATAATGGGCGCTTCCGGGGAGCAGAGGCCGCGAAGGGGACTGGGCCGTACCATGTTTCCGACCCGGGGAGAACTCGACTCACCCAGGAGCTGGAAGGGGGGGCAGTGACTGAAGTTGGAGTCTCGGGGACGCCGGACGGGGCCCTTTCCGAGTCCCTCTCCCGGTAGATTTTGTAGAGCCGGGGGCCTAGGACGCAGCTCAGCAGCTTCGCCATGGCCCCCGCTCCCGCCGCTGCTCTCCCAGCAGCAAGTCCCCCTTCCGACCCCGCCCTTCCCCGGCCTCGAAGGTATTGCGTGCCCTTGACGTCAGCACGTACCGGCTCCGCCTCGAGCCCTGTAGAGACATTTTCCGCGCTGCTTGAGACGGATTTCGCGCAGTTGGACCTACGGGTAGAGCCGTGGTCAGAAATTAGTTGGAGGCGTTTGGAACGCGCCGAGGTAGGGGATTATCAGG----ATTAAGTCACTTTTTCCCATCCCTTAATATTGGCAGGCTCTTGAACGACAATGGGAACGAGGGATAAGAT------------------GCAACAcaaagaa-aaggtgtctaggaacacatctaaccaaagaaatgcacgattttatgaagaaaattacagaagttt a score=7205 s hg19.chr6_ssto_hap7 3002996 298 + 4928567 gaaagaggtaaacgaaaagcttttcaataaatggaaagctacaccatggtcctggatacgaaaattcagcac-agtaagatatGCggaatatttgtaaaaagaaaataaa---------tgaatcattactgttatgcatgaactggatcttaaaaccatgatgctgagtga-aaatagaaagccacagaagaatgtatacgtga---------------tactagtatattagattcaaaaacacataaaatttaatgataAAGCAAGTGGAGAAGAAAGAGAAAATTCAGAATTGTGGTTACACAGCATAGAGGATCTCTGA s canFam2.chr12 4186073 308 + 75515492 gaaagaggtgaccaaagg---cttgaataaatatagagctacatcgcagtcatggataggaggactacgtattatcagggtgtGTAAAATACCGGTTAAAAAAAAAGAAAAAAAAAGGAGGAATTCTTGCTCCTAAGCGTAGAC-AAATCTCAAATGTAT--TGTTTAGTGGGAAAAATAAAGCCACAGATTGAT-TACACGCAACCATCACGATACATATGCATCTGTATAACATTTGAAAA----GAAAATTTAATGAT----CAAGTGAAAGTTGAAGAGCAAATTTAGAATAGTG-TAACACAGCATAGAGGATCTTTGA a score=10447 s hg19.chr6_ssto_hap7 3004555 285 + 4928567 aaataaattaCACATTAAAA-CTGTAATAACTGCATGAAGATCTGCCTTAGGAGTTTTTGCCGTTCAGAAGGA------TGAATCAGCCCG-------TTAGCCTTGTCCCTGAGTAATAATTTAATACACTTATTAGGGTTTCAGGAGAGGTCCGGGGTATGCCAGACAACCACAGGGAAAGtcattccaaatcatttacgggacactgactcgatacacagtcttgtgctgggttctgtggaggaccaacataaaaactcaaactcagtttcttcactcatagctgacatttctttt s canFam2.chr12 4188151 282 + 75515492 AAATAAATAGCACATTAAAAACTATCACAGCTCTATAAAGATCTGCTTTGAGAATCCTGCCTGGAGTAAAGGGATTTGGTGAGTTCTCCAGGCCTCTTTTATCCTTTTCCTTTAGTAGCAAC-----ACACTCACCAGGGGCTCAGAAGAGGTTTGG--TGGGCCAGGCAGCCACAGGGAAAGTCATTCTAAATTATTTATGGAGTATTGACAAAGCGTGCAGTCTTGTGCTGGGTTCTGTGGAG-ACCAACATGAAGACTCA------GCTTCTTCACTT---GTTAGCATCTCTTGT a score=2689 s hg19.chr6_ssto_hap7 3005134 80 + 4928567 GGAGTGAA--AGAGACCTCAGAATGTACTTCCAGACTGACAAGAGCTAGACAGGCAGGACCACTTCTCTGCATGGTTTTTTG s canFam2.chr12 4188433 82 + 75515492 AGGGTGGAGGAGAGAGCACAGAATATACTTCCAGACTGCATATAGGTGGATAGCTGTGCCCTCTTCTGAGCAAGCTTTTTTt a score=86819 s hg19.chr6_ssto_hap7 3005220 1535 + 4928567 AAGTCTTTATT-TGAGCCCCTTAGCTGATGTGGAATCAGAAGAGCAAAAAGGTCATCTTCAGAGTGGCCTGGGCTGGGTCCTTTTCTCTCCAGGATAGAAAAGTGGTGGTCACTTTATCCCTAGTAGACATGCTGCTGGGCTTTATCGCCCCAGCATTCCCATCCCCTCCAGAGCCCCTTGTCACTCCAGACCAGCGAGTGTGGGCCTTTATCTGGACTCTGCTTCCTCCCTGGGGACACCAGGTCTTGGAGCAAGAGAACTTGGCAGGCTCTCCCCATGGCAGTCTTATTCCTCCTCCT---GTTCCTATGTGGAACTCCCCAGGCTGC---AGGTAAGGGGCAAGAGGTACGGGATTCCTTAGCTATTTGCAAGGTTGGGGAGGGACTACTGCTCTTTCTCCT-AGGAGCCTGGCGAAGGCATCTGACTCAAGAAGATAGAATTACCCCAACCAAC----CTCCTCCTGCCTCTGACACTAGGGAAGACCCAGAGGCAACGAGGGTCCAGGTTATGCA-----------------------------------------------------------------------------------GTTTCCTTTATAAAATAAGAAGA-ATGAGTAAATGCTTCCAGAAAAGTAGAAATGAGTAGAAGAGATGTGGGCATTTGCCAAC--TTTCAGCCTTTTC---CCTCTTGCCCTCAGACCCCCTCACTGGCTGGGGGAGAGAGGAGGAAAGCCCTTACCCTCTTCTCTCCACCTGTCTTATTTTTGTAGCTGTCACTTGAGAAATGTGGTCACCAGCCAGGCCTGTGCTGGGGGACCCCAGAAGGGAAGGAAGCCAGGG---------TTGAAGATCAAATGGGGGGTTATTGATCTGATGGAGGTCTCTGGCCTCATACAACCCTCTTCCCACAGACAACATGCAGGCCATCTATGTGGCCTTGGGGGAGGCAGTAGAGCTGCCATGTCCCTCACCACCTACTCTACATGGGGACGAACACCTGTCATGGTTCTGCAGCCCTGCAGCAGGCTCCTTCACCACCCTGGTAGCCCAAGTCCAAGTGGGCAGGCCAGCCCCAGACCCTGGAAAACCAGGAAGGGAATCCAGGCTCAGACTGCTGGGGAACTATTCTTTGTGGTTGGAGGGATCCAAAGAGGAAGATGCCGGGCGGTACTGGTGCACTGTGCTAGGTCAGCACCACAACTACCAGAACTGGAGGGTGTACGACGTCTTGGTGCTCAAAGGTGAGTGGGGGCATGCAGACCAGGGGCT----ACTGTGGCCCAGGAAGTCCAGGTGAAGAACTGAGGAATCCCTCTCTCCCCTACAGGATCCCAGTTATCTGCAAGGGCTGCAGATGGATCCCCCTGCAATGTCCTCCTGTGCTCTGTGGTCCCCAGCAGACGCATGGACTCTGTGACCTGGCAGGAAGGGAAGGGTCCCGTGAGGGGCCGTGTTCAGTCCTTCTGGGGCAGTGAGGCTGCCCTGCTCTTGGTGTGTCCTGGGGAGGGGCTTTCTGAGCCCAGGAGCCGAAGACCAAGAATCATCCGCTGCCTCATGACTCACAACAAAGGGGTCAGCTTTAGCCTGGCAGGTAAACTGAGGAAGGAGACGGAAAGGGATGt s canFam2.chr12 4188743 1628 + 75515492 AAGTCTTTGCTCTGTGTCCTTCAGCTGATATAGAGTCAGAATTGTGAAGAGATAATCTTCAGAACAACCTGGACTGGGTCTTTTCTCCCGTGGGACTGCAAGGTGCTGGTCACTTTTTCCCTAGTAGACATGAAGCTGGGCTTTATCTCTCCAGCATTTCCATCCCCTC-AGAGGCCCATGTCACTCTAGACCAGGGAGCATGGAACTTTATCTGGCTTCTATTTCTTCCGTGGGG-CACCAGGCTCTGGGG-AGGAGAACTTAGCAGGCTCTCCCCATGGCAGTCTTATTCTTCCTCCTTCTGTTCCCATGTGGGCCCCTCTGGGCTGCTGCAGGTAAGAAACAGGAGGTGGGGGAGTCTTCAATGATTTTAAAATT--GTAAGGAACTACTAATGTTTCTCCTTAGGGGCCTGGGGAAGGCATCTGACTCAAGAAAATAGATTTACCCCAGTTGACTCCCCGCCCTCAGACTCTAATTCTGGGGAAGACCCAGAGACCATGAGGGTCCAGGTCATGTACAgtttcttttttgtttgtttgttttatatttaatttgttttgtgttgttttgtAGAGTCTATTTTTTTCCTTTGGTTATATAGTTTTCTTTAGAAAATAAGAATAGATGAGAAAATGTGTCCAGAAAAGGAGAAATGAG----AGAGAAG-GGGCCTTTGCCAACCATTCCAACCTTTTTTGTCCTCTTGTCTTCATATTCCCTCACCCACTGGAGGAGAGAGAGGAATA--CCCTACTGTCTCCTCCCCTCCTCACTT---TTTGTAGCTGTCACTTGAGAAATGTGCTCAT-AGCCAGACCCATGCTGGGAGACCCCAGAAGAGGCAGAAACGGGGGGGGGGGGGGTTAGAGGTCAACTGGGAG-CTGTTGATCTGATGGAGGTTTCTGGCCTCATACAACTCTCTCCCCACAGACAACATCCAAGCCATCTATGTAGCCTTGGGAGAGGCAGTGGAGGTCCCGTGTCCCTTACCACCCCGCCTGAGTGGAGATGAACTCCTGTCCTGGTTCCACAGCCCCGCAGCAGGCTCCTCCACCACCCTGGTAGTTCAAGTCCAAGTGGCCAGGCCAGCCCCAGACCCCGGGAAGCCCATAAGGGCATCCAGGCTGAAACTGCTGGGGAACTATTCGCTGTGGCTGGAAGGATCCAAGGAGGGAGATGCCGGTCGGTACTGGTGTGCCGTGGTGGGTCAGCACTACAACTACCAGAACTGGAGGGTATATGATGTCTCCATACTCAGAGGTGAGCAAAGGCGTGCAGCTCAGGGGCCGGGGGGCGGGGGGCAGGAAGTCCA-GCAAAGAACTAAGG--TCCCTCTCTCCCC-ACAGGATCCCAGCTATCCGCAAGGGCTGCAGATGGATCCCCCTGCTCTGTCCTCTTATGCTCTGTGGTCCCTGCCAGACGCCTAGACTCTGTGACCTGGCTAGAGGGAAGTGGTCCTGTGAGGGGCCATGTACAATCATTTTGGGGTGATGGGGCAACCCTGCTCTTGGTGTGTCCTGGGGAGGGGCTCTCTGAGTCCAGGGAACACAGACCAAGAATCATTCGCTGTCTCATGCCTCATAACAAAGGGGTCAGCTTTAGCCTGGCAGGTAAACTGAGGGAGAATAAGGGAGAAGATAT a score=5311 s hg19.chr6_ssto_hap7 3007075 125 + 4928567 TATTTTTTCTTGAAAGAAAGGGTGAATTACTATAAAGGGTGTGAGGGGAAAGTGTGGTTATGGCTGGTGGTCTGCTCTGTAGTTGGTTGCCCATGCGTGAGCAGGGG-GCATTGCCATTCTCTACT s canFam2.chr12 4191014 122 + 75515492 TAGTTTTTCCTGAAAGTTTGGGTGA----CTGTTAAGGATATGAGGAAAGATTGCAGTTATGGCTGACTGTCTCCTCTGGAGTTAGCTGTCCAGATGTGGGTAGGGGTAGATTGCTATTCCCTGCC a score=133925 s hg19.chr6_ssto_hap7 3008434 3108 + 4928567 GGGTCAGGGTGAGAGGCCTGGAAAGGGGCAGAGTAGGGTGGAGGATATTGTGGGCAGGGAAGCTTACAAAGTCTTCTGTTGG-AAGAGCCCACCAGACTGTGGAGGGGAAGCCTCTCTTTGGGGCACAGGGACAGGGCCCCTCACTACCTCCCTCCCATCCCTCTGGTCTGGCCCTTACTACAGCCTCCATCGATGCTTCTCCTGCCCTCTGTGCCCCTTCCACGGGCTGGGACATGCCTTGGATTCTGATGCTGCTGCTCACAATGGGCCAGGGAGTTGTCATCCTGGCCCTCAGCATCGTGCTCTGGAGGCAGAGGGTCCGTGGGGCTCCAGGCAGAGGTGAGTCCCTCCCTCCCCGGGGAAAGAAGAGGGCACATGGGTGGGAGGCAAAGGGCTAGGCTCACACCCTGCCTCTGTACCCCACCTCCTCTAGGGGAGGGG------GCGAGGAACACGG---------------------CTCTAAGTTGTCTGCTGACTTCTCTTCTGTATCCCTGATGGCTCCTTCTCCCCAGATGCCTCGATTCCTCAGTTCAAACCCGAAATCCAGGTCTATGAGAACATCCATTTGGCCCGTCTTGGGTGAGGAACAGCTAGGGAACAGAGGCTTAAATCCTGGAGGGGACTGGGGATGGAGAGGAAACACGGGTTGGGTTGGGGATGGGCCCT-CGTTCCTGAGGATGTGAAAAGTAGAGGTATCCTTAATCTGTCTCTCTG----GAAAACCCCACAGCCCACCTGCCCACAAGCCCAGGTGATTTTGGTGACATCTGCTGGGAAGTGTGACCTGCTGTCTCGCTGGCCATCTGGCACCTGGAAGATTC-CTCGACAACCTTAGCAAGGGGGGCGGGACTGAGAGTTCGACTTCACCATCCAGCT-GGCCTCCAGCAGCCAC------------------CAAGC-------TGTGTATGGGGAGGGGTGGGGGACTGAAGGAAAGGAGGAGCATTATTCTGTGATGTAACCTACAAAAAGGTTTGGTCTCCTGTCTTGTAGCAGCAGTGGAGGGATGGCCCTGAGC--CCATAGTA-CTGTGGGGTTGAGGGGAGCCTGAGGTTGCTGGTGGGGGCAAGGAGGATGGGTGTGCACAGGGAGGAGACAGGAATCTGGAGACTTGAGCAATGGTGGGGAATCCATTGCAGTGGAGCTGAAGGACAAATGGGGAAAACGGGGGAagagagagaagggaagagactcaagtcagagaaagtggaaagagatggacagagggagaaaaatagaagcacaaagtgggaggatggagggacagagaaaATGGA---AAGCCTCAACCCATCTCTAAATTAAGCCAGACCCC---------CACTACCCCAT---------------------GTCTCATCCTCACAAAGAA------GAGAGGGAACAGGCATATTTAATCA-ACCCCAGACTTCCTCACATGCAAGGGGAGGGAACTGAGTCAGGATAGAGATGCCTGTGCTCAGCTCCCACCCGGGGCCCCCTCCTTATCCTTCCTTATCCTAGGCACACACTCTTCCCTGTGGCGCCTTACCGGGGCATTCAGAGCATGTGAGCAGC-TATCGCCACTCTGGCACTTCCTTCCTGCTGCCCTGAG-GTCACACCCTATTTCTCGGGGGCAGAGGGAGTGTCTACTCAGGCTGGCAGGCCCAGTGGGGGTATGTTATTTATTGGGCCGGGGCCATGCTGGGATGTCTGTGAACCATGGGCGAGTCTGGGCTGGTGAAGCGAGGGAGGATATTGATGCTCCCAACTTGGCCATTCCCTAGTCTCAGGCAGAAATGAGCTGAGCT-CCAGCCACACCCTCACAAGCAGCTCCACTGGGTGCCCTTTTGTGTCTCTGCTCAAGCTTGGGCCTTACTGGAAAAAAGCTTTCTCAGAAGTCTCACCTAAAGGCTTCAGGCTGCAGGGGCTTAAACTAAGCCATTGGCAAGAAAAAGGACGAAAATGACACAGATGGAGAATGAGGGGAGTGCCGTGGTCCAGGTTCCAGCTCCAGCCCAACCCACCAAGCAGCTACAGTTTGCTCTTAGAGcacacacacacagacacacacacacacacacacacacacacacacacacacacTGCAGTATCTGCAGTATTACTGGACTCCTAGATAG-ACCTTTTATTAAAGGTACTCTTCATAG---------------TCCCCCAAG-CCCTCCATCCTGAGTTCCCGACCTACCACATTAGTCTTTCCTAGCAAGACTCTCCTCCTTACCATACCTGATGCTCCTTTGATCCCCTTGCCTGAGATCCACAGTGTCATCAAAATGCCTGCCTTGCCAGTGACCTGG-GCTGACACGGGGCATCAGCAATGGGCATCTAGAAAAGACAAAAGACGCAGAATAGGTGTTCTTTATGAGGTTGGACTCTGGGCAGGTGCCTCC---------------------------CCAGGCCTTGTGAGGG-GTCTGTGAGGG-GTCTGCTGAGAGATCT---GGGGTCTCTGTACAAAATTAGGTTCTCGGGCATGTCTCAAAGTGTCTGTGCAGGTGTTTCCAGGGCCGCAGTGATGGCGGGG--GGTATCCTGGGTTGGGGGCTGCAGATCCAC-GGAAGCTAGTGGAGGAGGTGTCCTCTCCCAGCGAAGC---TGGCCACAAAGAGGGGCAGGGAGGCGAGGAGG---CTGGTGAGCTGCTGTGGGGAAGCGGCTATGTTGCACAGGTCCTGCTCGCAGCAGTGGTGCCACAGAGTGTAGGAGTGCAGCCAGTAGGTGGCATAGCCTGGCAGAGGGCACTGGGCCCTTGAGAGGCAGCTTTTTCACTCAGTGATCTCACTCTGGTCTGTGGGATGAAAGAGGCATGCTGAGGC-------------------------GGGGGCCACAGGAAAGGCCG----GATGGATGGAGGTAGGGAGCCTCCTGGAGAAGGGCCATTGGACCAGAGTCCTACCTGAAGTGCCAATACTGATGCCACAAGCTTCATCGTCCCGACACTCGGTGGGAACAGGGTGGCAGGGTTTGGTGAAGCCACAGATGTAGCAGCGGAGCCTTCCCCGGGCAGGGGAC------ATGGTGAGACCTGTTGAGGCAGCAGAGATTAGGAGAGCAGGAGAGGCAAAC------CCTCCCTGTGGGGCAGGCAGAGGCCAGATCCGGA--GAGGGATCACAGAGAGAGGTGACACATGAAGCAGAGAGAGGAAAGCTGTGGAATAAGGGAGGAAA----GCTGACAGAAGTAGAAAAA s canFam2.chr12 4191150 3093 + 75515492 GGGTCAGCATGAGCGGCTTAAAAATGAGCAACGTGGGTTGGTGGAAATTGGGGACAAAGAAGCTTATGAAATCTTCTGGTGGGAAGAGCCCACCTGACTATGT-GGGGAAGCCTCTCTTTGGGGAACAGGAATAGA-CTCCTTACCACTTCCCTCC-------------TTATCCCTATTCTAGCCTCCACGGATGCCTCTCCTGCCCTCTGTGCCCTTTCCACGGGCTGGGATGTGTCCTGGATCCTGATGCTGTTGCTCGTGGCAGGTCAGGGATTCACCATCCTGGCCCTCAGCATCATGCTCTGCAGACAGAGGGCCCAGGGTGCTCAGTGCAAAGGTAAGTCCCTCTCTGCCAGAGGGAAGAAGAGAACATGTGGGTATGAGGCAGAGGTTTGGGCTCACATCTTGCCTCTATGCCCTATCTTCTCTCGGGGAGGAGGTTAGTGTAAGGACTATAGCTCTGAGTTATCTGGTGATTTCTCTGAGTTATCTGGTGATTTCTCTGCTGCACCCCATATGGCTCCTTCTTCCCAGATGCTTCGATTCCTCAGTTCAAACCTGAAATCCAGGTCTATGAGAATATCCATTTGGCCCAACTCAGGTGAGGAAC-TCAAGGGGGTAAAGATTTAAATCCCAGAGGAAACTG------------------GGGCCAGGGTGGGTATGGGGTCTGGGTTCCTGAGGAGGTGGAGAATGGAAGTACGCTTAGTCTGTCGTTGTGCTTCACAAACCCCACAGCCCACCTGCCCCCAAGATCAGATGATCTCCATGACATCTGCC-GGAAGTGTGACCTGCTGTCTCTCCCACCATCTGGCACCTGAAGGATTCGCCTGAAAACCTTGGCAAAAGGGGAAGGGCTGAGAGTGCTACTTCACAGTGCAGCTCGGTCTCCAGCAGTCAAGCTTGGGGGGGGGGGGTGCGAGCACACATGTGCGCATTGCGGGGGAGGGTGCACTGAAGGAAAGTAGAAGCATTATTCTCTGATATTACCTGCAAGAAGGTGTGGTCTCCTGTTCCATAGCAGCCTGAGAGAGGCGGCTCTGAGCAACCATGGGATTTGGGGGGATGGAGGGGGT---GGATGGCAGGGAGGGAAGAGGAGTAGGAGTGGGCAAAGAGGAGACAGAAGAACCCAGAGACTTGAGCAATTGTGGAGACTCAGTCTTGGAGACACCAAAGGACAAAC---------------------CAATGGGAAGGGACCCGAAGTAGA-------GAAAGAGATGGGCAGAGCTAG-ACAACAGAAGCAC--TGCTGGATGCTGGATGGCT---GAGAATGGAGAGAAGACTCGG-GTGTCTCTAAATTAAGCCCAACCCCCCACCCTTGCCCCCCCCCATCCCCACATCCCTCCCTGCCTAGTCTCATTCCCACAGAGAAGAAATTGAGGGAGAACAAGCACCTTTAATCAGACCTCAGACTTCCTCTCATGGACAGGGAGGGCACTGAGTCAGGATGGGGGTGGCTGTGCTCAGTCCTCACCCTTGAGCCA--------GCATCCTTATCCTA-------ACACTTC-----GG---------GTGGTATCCGGAGCA-GCGAGAGGCTTATCAACATCCTGACA-----TCCTGGGAGCCCCAAGAATCACATGCTATCTCCC-TGGGTAGAGGGAGTGTCCA----------------CAGGGTGGGTGGATTCCCCCCTGGGGTGTG----TGCTAGGCTGTCTTAGAACCATGGACAAGTCTGGGCTGGTCAAGCAGGGGAGGGCACTGATGCTCCTAACTGCTCCATTCCCTGGTCTCAGGCAGGAAGGAGCTGGCTTCCCCACCACACCCTAACAAGCAACTCCACCAGACA-CCTTTTGTGTGTCTGCTCAAGCTTGGGCCTCACTGGAGAAAAGCTTTCTCTGAAGTGTCACCAAAAGCCTTCATGCTACAGTGGCTTAAACTAAGCTATTAGCAAGAAGGAGGACT-CGATGACACAGACAGAGGATGAG---------GTGGGCCAG----CAGC-CCAACCCAACCCACCAAACAGCTCTAGTCTGCTTTTAGAG----------------------------AacacacacacacatacacacacaGTGCAGTGTC----------CTGGACTCCTAGATATCACCTTTT--------TACTGTTCATAGTTTATTGTTCACAGTTCCCCCAAGAACCTCCTTCCCAAGTTCCTGATCTGCCAAATCAATCTTTCCTAGTAAGACTGTCCTCCATACCATATCTGGTGCCCCATCAATCCCCTTGCCTGAAACCC-CAGCTCCATCAACACACCCGCCTTGCCCAAGACCTGGAGCTGAGATAGGGCATCAGCAGTGGGCATCTAGAAAAGATAAAAGACCTAGAACAGCTGTTCTTTATGAGGCAGAACTCTGGGCAGGTGCTTACAGGGGCTTAGAGCAATGCCCGCAGGAACCAGGCCTCCGGAGGGTGTCTGGGAAGGTGTTAGGCCAGGGATCTGTAGAGGTCTC--TACAGAATCAGATTCTTGG----TTCTCAAA-------TGCAAGTGTCTCCATGG--GTGGTGATGATGGGGCCAGAGTTCTCCGTTGAAGGCTGCAGTTAGGCTTGAAGCTAGTGGAGGAGGCGGCCTCCCCAGGTGAAGCTGGTGGCGAGGAGGAGGAGCAGGGTAGTGAGGAGGGTTTTGGGGAGCCGCTGCAGCGTGGTGGCTGTGTTGCACAGGTCCTGCTCACAGCAGTGGTGTCGCAGAGTGTAGGAGCGTGACCAGTAGGTAGCGTGGCCTTGCAGAGGGCACTGGGCCCTTGGGAGGCAGCCTTTCCGTTCGATGATCTCATTCTGCTCTGTGGGAC-AAAGAGA-ATGCTAAGGCCTGGGCAGGAAGGAGGCAAGGGCTGTGGGGCAGCAGGAAAAACAGAATAAATGGATGGAGATGGG------CCTGGAGAAGGGCCATTGGACCAGAGTCCTACCTGAGGTGCCAATACTGATGCCACAAGCTTCATCTTCCTGACACTCGGTGGGAACAGGGAAGCAGGGTTTGGCAAAGCTGCAGGTGTAACAGCGGAGCCCACCCCGGGTAGGGGGCGGGGGTGTGGTGAGACCTGTGGGGTCAGCAGAGAT--------CAGGTGAGGCAAATGGGCTGCTGCGCTGAGAGGC---TCCAGCCCTGATCCAGGATGGGGAGTCATGCAGAGAAGTGACACACAAAGTGGGGAGaaggaag-tggaaagaaaggaagggaaaggggcaaacagaagtagaaaaa a score=12415 s hg19.chr6_ssto_hap7 3011836 327 + 4928567 GGGAGACGATGCAGGAAAAGAAACAGAGATGGAGGCAAGAGGGGTACAGGGAT--TGAGAGATGCGCAGACATGAACAGAAGCCACAAGAATCAGAGACCAACATAAAAAGAGTGAGACAAAAAGCCAGACCCAGCAGCAGGGAAGTTGAGGGGGTCAGTGAAAAAGTTAAGTAAATGGCACCAGAGACAGATAGGAAAATAGAAATTGACATTGACCAAAGGGCCCAGCACAGAAGCAACACGTGAAATAAGGGATAGGGGAGACAGGGGCGGATCAAAGATGCAGCAAGG--GGGAGACAGTTATTCTCAAATGCC-TTGAAAGGAAACT s canFam2.chr12 4194261 304 + 75515492 gggaaacaatgcaggaaaagaaaAAGACCCAGAGGCAA-AGGGATCCAGAGGTTGTGAGAAATGCACAGATG-GGACAGAAGCCATAAGAGTC----------------AGAGTGACACAGAAAGTCAGA--------CAGGGGAAGGCAGGGTGGCAGTGAGGAAATTAAGCAGATGGTGCCACAGACAGAAGAGCAAATAAGAATTGACACTGACCACGGGGACCC-CGGAGAAGCAAGATGTGAGACAGGGGCAATAGAGGACAGAGGCCTGTC-ATGATGCTACCAAGAAGAGAGAGAGTTATTCTCAAATGCCTTTGAAAAGAAACT a score=37821 s hg19.chr6_ssto_hap7 3012231 1077 + 4928567 GCTCTCTTCTTGGCCTCTTCCAGCACCCACACCCCTCTCCTC-----CCCAGCCCTCAGGTTCCTCCACATGCCCTTGTCCCCACCCCCAGCCCCCTGACCACTGAAGGTTCCCCAGCCCACCCTTACCCAGTGCCCCACAGAGGAACAGCACGCAGAGGAAGATGCTGGAGGTGCCCATGGCCAGACACAGG-CTCAGGAATCTGGGAGAG-GTGATCTGCACCCCGAGATCCCGGGATTTGTAGAGTTGGAGCATTTGAGCAAGACAGTGAGGAACCAGTAAACAAACACACCTAGGGAGTGAATCTGGGGGGCGGAACCATGACCAGATTCACCAGCCTGACCCAGCAGGCAGCGGGGGCC----------------------------CCCAGCCTGCCCCTGCAAGGAGTCTGCCCTTGCCTGGAGGGTCTCCTCTGCTCTCTCAGCATGTTGTCTCTGTAACTT--AGCTTCCTCTCCTGCTCCTGAGTTGTGTCTGTCGCCTTCCCTCCTACTCCTCCCCCTCCCTCCCCATGTCTCAAGCTGCTCCCTGGCTCTCTCAGCTT--CTCTCTGTCTTTGTTTTCTCTGTCTTTC-CCCCTCAGTGCTTTCATGTCTCTCAAAGTCACCCTCCTA-AACAGCCCCGGCGTGGATCTGTTTGAGTGTAGAATCAACAATACCCCCACCCACACACCCACATGCACACACAAAGCCCAGCTGTGTAAGGGCGGACCCCACCCAGCTTCAGATCCCTTTGATCCCCCCAAGCTTCAACATTCCTACCCTGTAATTATCCCTGCCAGCTTTACTACCTTGGAGGAAAGAAATAACCACGGGTGGGGCTGGAGGGCCTGCTGATGTGCTTGCACTGGGG---------------AGAAATCACTAGAAAGGAAGGCATGGATGGGATTTGGGGTAGGGGGGTGGTGATACAG--CCTGGAAGGCTGGGGTTGAAGAGACTGGGAAGGAGGAAGGCCCATCTGGGGAATCAGAGCCAGCATGTACCAGGAG--GAGTAAGACTAGGAACAGGGAGTGAAGATAGGGGAGACACAGGTGCCCAGGAGAGcagctcttttcaaaaatattgatctcaggacctctttacacttttcaaa----g s canFam2.chr12 4194820 1034 + 75515492 ACTTTCTCCTGGCCTGAGGCCATTCCCAGGAGCTCTCTTCTCAAAAGCCCAACTCTC----CTCTCTGCA-----TCTTCCCCACCTCT-------------------GCACACCGGCCCACCCTTACCCAGCGCCCCACAGAGGAAGAGGAGGCCCAGGAAGATGCTGGCGGTGCCCATGGCTGGCCCCAGGACTCAGGCGTCTGGAAGAATGGGATCTGCA-CCCGAGATC----------GAGAGCTGGAGCATCTGAGCGAGGCAGGGAGGGACGAGTAAACAAACACACCTAGGGAGTTAATCTGGGGGGTGGAACCGGGACCAGATCCACCAGCCTGACGCAGCAGGGGCCCAGGGCCACCGCTCCTGCGCCCCACATCTCTCACACCCTCCCGCCCCCTGC-TTGAGTCGACTTGAGCCT--CGGGTCTTCTCTGTTC-----------TGTGCTTGTCACTTGCAGCTGTGTCTGCCGCT-CTGGGTTCTGTCTGTCACCTTCCCCCGCACTCCTCTGC--ACCTCCCCTTGTCTCAAGCTGTTCTCT-GCTCTGGCAGCTCAGCATCCTGTCTTTGTTTGCTCCATCTTTCTCCTCTCTGTGCTTTGGAGTCTCTCAAGGTCACCCTCCTAGAACTGGTCCAGCGCAG---CATTTGAACATGGAATCAACAATCCCCTCTCCCACCCGCCCC----TCCACCCAAAGCTCAGCTGCGTGAGCG-GGACCCCACCCAGCTTCACATCCCTTTGATCCCTCCAAGCCTCAACTTTTGTACCCCATAATTATCTCTCCCAGATTTACTATTGTGGAGGAAGGAATTAACCACGGGTGGGGCCAGAGGG---ACAGATGCGTTTCCACTTGGGTGGGTGGGGGCGGTCAGAAAG-ACTAGGAAGGAATGCAGGGAAAAGATTTAGGA---------AGTGATAGAGATTCTGGAAAATTGGGGTTTAAGACATTGAGGAGGAG--AGCCTGATCTGGGGAATCAGAGCAGGGGTGTACCAGGGGTTAAATA------------------GAAGAGAGAGGAGACAGATATCCTT---------TTTTTTTTTTTTTttttaaatctcaggacctctttacactcatagaagaccg a score=47701 s hg19.chr6_ssto_hap7 3013308 1193 + 4928567 ttacttaagactctgaagagcttttctt--tatgaggttatatcaatatttactacattaaaaattaaaacagaaaatttaaagtaggtatt-tattgatttatttaaacaataaaaataataaa-gtattacatgctaacaaaatacagttttgtgaaaaataactattatttctccacagcacagtgagaagctgagcattgctttacatttttgtgaatctagt----gtcaggcttcgtgggagatgcctgggttttcctatctgcttctgcattcagtctgttgggatatgttgttttcgttgaagtccagtatatgaagaaaatctgaccttacacaga----tagttgcaaaaggaggaCcctcaaggaccctgtgaaagggtatcagggatcctcaggggttcttg-----TTGGTCCACAGACTGCTGCTGAGGATAAAGGAGTTTGAGGACTCCAGAGGATGCTGAGAGC----ATGCTGTGGGGCCCCTCCCTGTCCCCACTGGGGCCCTTGGTGCCTGCTGGGGGAGACTCTTTCTTCCTTTTTTATAGCCCTATAAAGCTCAAGGCACGGGGGATATAAGGCAGGCAGAGCCGGGCTGGGGAGGGGGGTGGGCAGGAGGTAGAGGCGGTCCTGACACGGGCAGACTGCGATGAAACCCCAGTTTGTTGGGATCTTGCTCAGCTCCCTGCTAGGGGCTGCCTTGGGTAAGGAGGCGGCCAGCTAGCTTCTCACACAGGCCTTCTGCCAGCCGGCTCCACCGAGGGCCCAGGTCCAGCGCCTCTTTTCTCCTGCCAGGAAACCGAATGCGGTGCTACAACTGTGGTGGAAGCCCCAGCAGTACTTGCAAAGAGGCCGTGACCACCTGTGGCGAGG------------------------GCAGACCCCAGCCAGGCCTGGAACAGATCAAGCTACCTGGAAACCGTGAGTCCTCAGTTTCTCCCTCTTCCAGCAGCCTTTCCCTGCCTCCAGC-CCCATGTCAATCCTTCTGGCTTCCAGAACCCTCCAGGCTCAGTCTGGCTCTGGGCAGATGGTGCAGCTGTTAGAGGAGAGCAGTCTG-TACCCCTTCTGGCTCCTGGCACGGAGCCCCTGAGAGGCCCACAGTCCTTGTGCCCCCACTTCCCCACCTCCTTATTCTCCTAAAAGAATCTCATAGGCCCATTAGCTCACAAATG-----AAGAGCTCTGGCCCTGAAAGGCCAAAGTTAAA s canFam2.chr12 4196015 1183 + 75515492 tcattgaagacccagaagagtttttctttgtgtgagttaatataggcatttactatagtatttactagatttg-aaatccaaagaggattttaaattggtttatttaaa-aataaaaataataaacctattacgtgttaacaaaatatggtt---tgcgaagtcat--ttctctccccacaacaca--gaaaag--gagtatcgctctacactttggggaattacataaaagtcaggcttaatagaagatgactggactttcacatctgcttctcggctcagtctcttgggatatgttgttttggttga-----agtacacggagaaaatc-aaccacgtatagatatgtagttggaaaaggaagACCAGGGAGGACCCTCTGAAAGGGTCTAGGG-----CCAGGAATTCTGGGGCGACAGCTCTATAG-CTGCTGCT---------GGCTGCTGCGGACTTCAGAGGACACTGAAGGCTCTTAATCTCACAGGCCCCTCCCTGTCCCCACTGGGGCCC-AAGTGCCTGCTGGAGGAGATTCTTTCCTCCCTTTTTATTGCCCTATAAAGCCCAAGGCA-AGGGGATATAAAGCTGGCAGTCAGGGCCAGGGGAGGG----GGGCAGGAGAGAGAGATGATACTAAAGCAGGCAGAC-ACAATGAACTCCCTACTCATGGGGGTCCTGCTCAGCACTCTGTTGGGGTCTACCCTGGGTAAGGAGGCAGCCAA--GGCCTGTT------GCCCTCTGCCAACTGGCTCC-CTATCAGTCCAGGTCAAGCACCTCTTCTCTCCTGCCAGGAAAACACATGCGGTGCTATGAATGCAGAGGAGACCCCAGCAGCTCCTGCAAAGAGACAGTGGCCACCTGCGGGGAGGGGAAACGCTGTGGCTTCCTGGAGCGCAAACCCCAACCAGGCCTGGGACAGAGCAAGCTGTCTAGAAACCGTGAGTCCTCAGTTTCTCTGTCTTCTCTTAGCCCTTTCCTGCCTCCAGCTTCTACTTCCATCTTTCTGGTGTCCAGAACCTTCCAGTCCCAGTCTGGCTCTGGACAGATGGTCCCACAG-CAGAGTAAAGAATTCTGAGGCCTCTTCTGGCT-CTGGCA------CTCTTAGCAGCCCATGGTCCTTATACTCCCACCTCCTCTGCTTC--ACTTTCC----AGGGTCTCATAGGGCCATTCACTCATAAGGGGTTGAAAAAGTTCTGTCCCTTGAAGGCAGAGACCAAA a score=7842 s hg19.chr6_ssto_hap7 3014501 216 + 4928567 ACCAAACT------TCAAATTTTC-GGCATTAGTTAAGGACCAGGGAGGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtACATGtttttaatattttattttaacataattttggattgacagaaaagttgcagaaatactcaa-----------------------cttctcctaatgctaacatcttacataaccatagcacaattatcaaaatcacaaaata--actgatacaa s canFam2.chr12 4197386 223 + 75515492 ACCAAAATATTAAACCAAACTTGCAGACATTAGCTAAGAACCAgtgtgttgtgtgtgtgtgtatgtgtgtgtatgcatgtgtg-------------------------attctgaaataatttctgactgacagaaaagttgcaaaaatattagaattcctgtatatctttcacctcccttcctctagcattaacatgtaatataaccatagtatgatcagcagaatcagaaaataacactggtacaa a score=3028 s hg19.chr6_ssto_hap7 3014717 40 + 4928567 tactactaactaatctacagactttatttgatttagcaag s canFam2.chr12 4197833 40 + 75515492 tactactaactaatctacagaccttattcagtttagctag a score=5932 s hg19.chr6_ssto_hap7 3014765 95 + 4928567 ttgcatttagctctcatgtcttcttagtctcctctgatctgtgccagttctgtttttctttgtctttcatgaccctgacacatttgaagagccct s canFam2.chr12 4199304 93 + 75515492 ttgcatttaggtctcatgtcttcttagtctcctccaatctgggacagtcctgcat--ctttgtcttccatgaccttgacatttttcaagagtccc a score=3564 s hg19.chr6_ssto_hap7 3015868 144 + 4928567 cttgaaatactaaaaattattttatagaatgtccctcgatatttatttatctgatatttgc-catgatgagattgaggtcatgca------ttttaagcaagaatactgcagaagtgatgttgcatccttcttgctgcatcacatcaggag s canFam2.chr12 4199397 141 + 75515492 ctt----------aagttattttagagaccatccctcaatttaggtttatctaatattttctcataattatactacagtcatggaattttttttttaaccagaacaccacaaaaggagaggttggttcttttcagtgcattgaatcagagg a score=104483 s hg19.chr6_ssto_hap7 3016029 2082 + 4928567 ttaactttgatcacttggtttcagggaggtg-tttTTTGAGGGG-GCTGAAAATCCCTTTGGGCTCCTTGAAATCACATCTGCTCTGCCCCAGAAGGCAAGTCCTGAAGCCAGGAGTCCAACACCCCAGTTTCATTCTCTCTCTCAGCCCCAGTGACCTTGATTCACCAACATCCAGCCTGCGTCGCAGCCCATCATTGCAATCAAGTGGAGACAGAGTCGGTGGGAGACGTGACTTATCCAGCCCACAGGGACTGCTACCTGGGAGACCTGTGCAACAGCGCCGTGGCAAGCCATGTGGCCCCTGCAGGCATTTTGGCTGCAGCAGCTACCGCCCTGACCTGTCTCTTGCCAGGACTGTGGAGCGGATAGGGGGA-GTAGGAGTAGAGaagggaacaagggagcaagggaacaagggaCATCTGAACATCTAATGTGAGAAGACAAACATCCTTCTGTGAGTCATTAAAATCTATGAACCACTCTACAGCTGACTGGAAAATTACATCTATCTTTGGTTGATGGGAGGGCTAAAAGCGTAATATGGGG-CATCCAGGTTCTAGTTTGGGGGTTACCAAGCAACAGCGGGCTTAATTACAGTGGTGCACTCCTTAACCAACTAAACCCCAAAGGGCAATGGCTTATCTGCCTTCTGTGGCTCCTGGATCCTGTTGCTGGGTTGAATCTTCCTTAGCAATGAGATTCATTGAGTGGGGTTG--CCAGGGTTTTGTGAG------CCTGAGTC------------TGGGTTTGCTCCCCTATTTCCCATTTGCAAGTTGGCTCCCAATAGGACTATTTTGAATTGAGAAAAGAAATGTAAAAACTGTGATAGGTAAAAACTGCTTGATGCCCTACTTACTAACTAGGCTAGGTGAGGCCTTTGACTCTAACCTGAGAGAAACTGAAGAAACAGGGTCTCAGGCCCCATCTCCATGTACCTCTCCTATCCTTTCTGGAGAGC--CCTCAAGCCAGGCCGCACCTTCTTCTTGGCAATACATCAGGGGTGTGGCCTAAATTTAGGATATGAGTTGTTG-------------------TGTGCCACCTGGAGACACT----------GGAAGGGAGGATGAAGACCTGAAAAACCTGTTTCTCCATTTTCCCCAGCCCAGCCTCCCAGGGAACCTCCCTGAAGGATTCCTGTGTAAGGGAGGGAGATTGAGAGTATTATTTCCTGGGAGGTGAC--CTGACCCTTAGGTCTTCTTATAATAAATGTACATTTTATCAGACTCAGACATTTATTACTCAAAATGGAAAGAGGTGAGTATGGGGGATGGGGTACATATGGGAGCCTGGGTTTGGGGAGTCAGCTCTGTACAGTGAGGTCATCAGGTCCTTG-TGGGAGCCTTCACTGGGGACAACACAGAAGCCCCATTTCAGGCCCAGATCCCAATCCCTCCTCAAGTAGGGGACAGCAGAGTATAGGAAGCAAAGTGGGGAGCCCTTCTAGGAGCCAATGG----------AGGTCCTGGAAGGAAGTGGGAAGGGACCCAGAAAAAGGAGAGTGAAGGGTGTGAGGTGGGAAGGATGGATGAGGAGACCACTCGGAACAGTGTTTAATTAAAGAAATG----------------------------------GGAGCTAGGGAGAGACGATTCTGTAAAGCCAGGGGATACAGAGACACAGGGAGAGAGGCTCAGGCCAAGGCAGGTGGGAGGAGGGGCAGCCAATGGAATGAGTCTCAGTGCAGCAGCCAGAGGCCAAGGCCAGCCAAGGAGGTAAGGAAGACAAGGCCCAGGGCTGGAGTGGGCCGGGGTCCTGCGCTGTTGCAGTTGTCCTTGTTGCAGCAGGTGGTGTTATATGTCAGACCCAGCTTGCGGTTGGTTTGGTTGAAGGCCTCCTGACAGGGCTCTTCTGGTGTGCCACAGCGCAGATTGGAGAAAACCCACATCTTACCTAGGGGTGGGAATGGGCAG-GGAATCGGCCAGGATGGGCACCTGGCATGCCTGTGTCCACCTCCCCACCCCATCCACCCACCTAGGCTTCCTTCCTTCCCAACTCTGTCCCTGGCCCTCCCCTTCTCTTTTCTT-------AGTCTGATCTTCCTTCTGCACATCCTTACCCACC-ACTC-CCCCagtcctggttctatcacttgctggccatgga s canFam2.chr12 4199849 2114 + 75515492 ttaatcttggtcacttggtttcatggaggtggtTTTCTGGGGGGTGCAGAGAATCCATGTGGGCTCCTTGAAGT-ACATCTGCTCTGTCCTAGAAGGCAAGTCCTCCAGCCAAGAATCCAACACCCCAGTCTTGTTTTCTCTCTTAGCCTCGATAACCTTGATTCATCACTATCCAGCCTGCATGGCAGCCCATCATTGCAATCAAGTGGAAACCGAGTTGGTGGGAGACGTGACTTACACAACCCACAGGGACCGCTGCGTCGGAGATCTGTGCAACAATGCCATGGCAAGAATGGTGGCCCCACCACGATTTGTGGCTGCAGCAGCCACTGCCCTGGCCTGGCTCCTGCCAGCACTGTGGAGAGGCTAGTAGGCTGTGGGGAGGGCGGGCGGGA----GGAGTAAGGGAACAAAGGAGATCTGAG--------GTGAGAAGACAAACACCCCTCTGTGAGCCATTAAAATCTGTCTGCCACTTTAGCACTGACTGGAAAGTGCCATCTCTCTTTCGTTGATGGGAGAATTGCAGGAGAATTATGGGGACACCCATGCTCTACTT--------ACCAAGTATCCATGGACTTTGTTCCAATAGTGTTCTCCTTGACCAATGAAACCCCAAAGAACAATGGAGAATCTGCCCCAAGTGACTCCTGGATCCTACTGCTAGGGAGAATCTTCCTTAGCAGTGAAGACTACTGAGGGGAGTAGGCTCTGGGCTTAGTGAGGGTCACCAGGAATCAAAGAACCTTGTTGGATCTGTTCCTCCTACTCCCATTTGCAATTCGGTTCCTGAAGTGACCCTATAGGATTGGGAAAGGAAAGGAAAGCACTGAGATAGGCGGG--TTGCTTGGTGCCCTGTTTACCAACCTGGCCAAGAGAGGCCCTTGTCTCAAACATGAAGGA-----------CTGGGACTCAG--------CCCAAGCA-------TATCCTTTTTGGGGGGCACCCTCAAGCCAGGCTGCACCTCCTTCTTGGCAGTACATCAGAGGTGTGGCCTAAATTTGGGATAAGGATTGTTGCTCCAAACACTGGGACCTGTGTGCCATCCCCAGACTCCCCAGACTTCAGGAAGGAAGGATGGAGGCCTGAAAAACCCGTTTCTCCATTTGCCCCAACCCAGCCTCCCAGGGAAACTCCCTGGAGGATTCTTGGGGGTGGGCAGGA-ACCGAGAGTATTATTTCCTGAGAGGGAGCTTCTGACAAC-AGGTCTTTTGACAATAAACACACAATTAATCAGACACAGACATTTATTACTCAAAATGGAAAGAGGTGAGCATGAGG-ATGAGGTATGTACAGGGACCAGGGTTTAGGGAATCAACCCCATACAGTGAGGTCATCGGGTCCTTCCTGGGAGCCTTTGTGGGGGACAGGACAGAAGCCCCATTTCAGGCCCAGATCCCCATCCCTCCCCTAGTCGGC-ATGGTGGAGTGTAGGAGGCAAAGCAAGGAGCTCTTCTGGCGACGAGTGGGAGATTTGGAATGGTCTGGAGGGATATGGGAAGGGATTCAGGAAAAGGTGAGTGGAGTATGGAAGGTGG-AAGGATGGGTGAGGAGCCCACT---------GCTTAATTAAAGAAATGTGAAGAGCCTGGAGAAATGCTTTTCTGAGCAAAGGGAGTTAAGGAGAGACGAGTATGGGGAACCCGGGGACAGGGAGACTC---------GGCTAAGCTCAAGGTAGCCA--AGGAGGGGCAGCCAG-GGAGTGAGTCTTAGTGAAGCAGCCAGAGGCCAAGGCCAGCCAAAGAGGTGAGGAGGACAAGGGTCAGGGCCGGGGTGGGCCGAGGGGCTGGGCTATTGCAGTTGTCCTTGCTGCAACAGGTGGTATTATAGATCAGACCCAGCTTGTGGTTGGTTTGGTTGAAGGTCTCCCGACAAGGCTCTTCTGGTGTGCCACATCGAAGGTTGGAGAAAACCCACATCTTACCTGAGGGCAGGAGGGGGCCGTGGGGTCAGCTGGGACGGGTGCCCGGTGTGCCTGTGTCCACCTCCCCTCCTCAGGCACCCATCCAGGCTTCCTTTC----CGACTTTG-CCAGGGCCCTCCCCTCTTTATCTCTTCTCAGTAAGTCTGACTGTCTGCCTGCACTTCCTTCCCCACCCGCTCGCCCCagtcttggtcctaggactcgctggctgtgag a score=39602 s hg19.chr6_ssto_hap7 3018429 772 + 4928567 tgtgttactgtctctttttgaggccgttttctcagtataataatagcacccacat-cacagggttgtcatgaacattaattgaaaaaaaggcatgcaaagacataggatgttgcctggcacacaaccatctttggccaaatattatcattGCTATAATCCTCTGCTTCTC------CATCTCAGTCTTAGACCCATTTGGGCCTCAGTCCTGGTCATAGAGGCTCCCACCTCCCTGTTCACCCCACTAAGGAAGGGGATGTTACCAAGGTATGCATGTGTTGTCAGGCATTGCTGTCCTGGCTCCAGGCGGCAGGACTGCCGGTCCACACAGCCCAGCACAGGGACCTTGTAGCAGGAGTGACAGCGAATGTCAGCTGGGAAGACACAAGTCAGGCTGAGGTGATGGGGTCTCTGACTTACCTGGGGATAAGCTGAGCTGGGGGCAGGGGTGGAGGGTGGAGAAGAGCCCATCCCGTAGGTGCTCCAACCTGTTTGGCTGTTTGGTCTAGCAAGCACAGAGCAGGTGAGTGATGCAGGGAAAATGGAAAGTGGGCGGCAGGTAAGGGTAGAGCTGTTGCTTTGTGAAAGGCCCACGCCCTACATATCTTCCATCACTCCACCCCGTTTGGAGGTGAGTCAAGAGGGACAGAACTATGAAGAAAAACATGGGGCTGGAGATAGATGGAATGTGAGGAAGATACCATGGGGAAAGAATGTGG-ATGGTGAAGGAGGA--------------------GATGGAAACTTGAAAGAAGGAGAAATAATAAAAATGAAAATCATG s canFam2.chr12 4201971 769 + 75515492 cttgttactgtctctttctgaggctgtatcctcagtataataaaagcacgcacattcacagggttctcgtgagcatgaagtgaagcaa-tccacataaagtcatagaaaggtgcctgatacgtaagaatccttggccaaatgtCATCATTGCTGTGACTGTCATCATTGCAGTGACCATCTCAGTCTGAGCCACAGTTGGGCCCCAGCCCTCGCCATAG--TCTCCCACCAGCCCCCTCTCCCCACTACAGAGGAAGATGTTACCGAGGTACACATTTGTTGTCAGGCACTGTTGTCCCGGTTCCAGGCGACAGGACTGCCGGTCCACGCAGCCCAGCACAGGGACTTTGTAGCAGGAGTGACAGCGAATGTCAGCTGGGAAGACACAAGTCAGGCTGAGGTGATGGGGAATCTGACTCACCTGGAGACCAGCCAAGCTGGGGG--------GTAGGTGGACAAGAGCCAATCAAGTAGGTGTTCTGACCTGGTTGCTTTGCTGGTG--------ACAGAGCAGGTGAGTGCAGCAGAAAAAGTGGAA--------GTAGGTGAGGGTGGAGTCATTACTCTGTGAA-TACCTACACCCTAAATATCATCTTTTACCCCACCCCATTTGGGGATGAGTCAAGAGGGGCAGAGATACCAACAAAAACATGGGGCTAGGGATAGATGGAATGTGGGGA---TACTGTGGGCAAGGAAGGAGGTGTGGGAAAAGATAAAGAATTCAGAAAATGTCACAGATGGAAACTTCAAATTAGAAGAAATACTACAAATAGAAATCATG a score=79392 s hg19.chr6_ssto_hap7 3019204 1965 + 4928567 GTTACAACACTGTCAGAAATGCCTTGGAACTTGAGGCTGGCGAGAAAGCCATCTGTGGCCAGCTTTAGCAATTTACAATTTACTCTTCACCTCCTGGAGCTGGCAAGAGTGTGGCAAGAGGAACCAGACCAGAATA----GAATCCTCTCACCCCAGTAGCTCTTCAGCAGAAAGGAATGATACCTGAGAGACAGATCACCAGATTCCATCTTAGCACCTTATCAAAATGGAGAGGGTGGATACAGAAGGTGGCACCC-CAAGTTTCCTGCTTCAGTTAATTCAAGGTTTGGGCAGGCAAGATTTGGTGACGCAGGG------TCCGAGGGTGGAAGAGCCTGGTAAGTGTACCTCAGTGAAA----TCCACTTCACCCTGGAGGTAAGTGGCCCAGTTGTCCCCTCTTCAGAAGGCTCAAGAAAACGCTCT-GTTTCCATGGAGGCTCTTAGATGTCACTGCAACCATCTAGAAAGTTTGTATCCCCTGTATGGGAGGAGGTATGCAACCCAGGAGGGGAGTAGGGGGTATCTAGGAAAGGCCATGGCT-GAGAGACTGAACATGTGAGTCCCTGATGGAGTAGATGGGGAGGGTAGGTTACAAAAGGAGCCTGGGGCTGGATGCCTAGGTCTTCGAGAGGACACCTTACTGAGCACAGCAGAT-AGAGGAGAAGGCAGGTAAGCTAGACTCTGGAGAGTTGCATATTGAAGTGGGGCTGGTTGGGGAACTGGATACCAGAGTTTCCAAGGAGGAGACACCTTGGAGTGGGGAACAGGGGACCCAGAGCCCTGGCAGGTGAGAGAAATGGGTCTTTCTTGGAGGTGGGGAGGATGGATGGAGACCTGGCTTTTTGAGAAATAGAGCAAGGAGGCTGTCATAGGGAAGCCTGGTCTTGGTGGCACAGGAGAGCTGAGCCAGTTGGGGCTGGGGGTG-TTGGGATCCCGAGTGGTGGGTAGGGCCGGGAAGTGGGTAGAGCAGGGTGTAAAGGTCCTGACCAGGCAAACCAGGTCTTTGGGGCCCCCAGGTGCTCACCTGAGACCCAGCAGAGCAGAACAGACAGGGTGAGCAGCATAAGGGCTTTCATGGCGAGGGTCCTGAGAATGGTGGCAACCACAGCAGCTGATAGAGTAGATTTTCAAGGATCCAGCTCT-----------AGGAGTTGAGTGGCCTTTTTGGAATTTATAAACCCAAAGGCTCCTCCCTTCCCTGCCTCTGGTAGCCCCTCCCTTCTCACTTACTACGCAGCTGACCAGAGAAAAGACAAGGGGTGGGAAGGCACTGAGCAGGACTGAGTG-GGGAGTAGGGATGGGAGA-------GAGGGATGGGGGAAGGCAGGTGCCACTAGTGGCCAATGCCATTGTGGTTCTTGGTTTCAGGCCAAGATGCCCTTCCTGGTCCCCAGCTAAGAGTCCTGCTG-CTCAGTCCTCTGAATGAGCATCATCAAAGGCCTCTGTGAT-TTACAGTGTCCATGGTGGCAGCTTCTGCTGGTTCCTGGAAAATGGACAAAAGGATGTGGCCCAAATTAATTGCTGAATTTGGGTCCCTGGGTCCCTGCTGGGCATTGATAGGGGCATGCTGGTGGAAATTGGGGGAGGAATGGGTCAAATTAATCTCCATTCAGCCCCCACTCGGTCTTTCCAATGCCTGCTCAGCAATAAG-------------------TGAC-TCACTGATGGCTTCTGTGATGCCACAGCAGCAGAGGCAGGGGCTGGGGCTACTCATCCAGGAGAGCCACCACAGGTCTGCTAAGTAGGGCTGCCTCAGGCTCCCATGAAGGTTCTCAGGATGTCACCCGTGCTCCACTTGCGCTTGGTGTGGCCTTGTTGCTCCAGTCCAGCAGCAGCAATTG---TCCTAGGTGTGGCTGTGTGCACCTGCTCCAAAGCACCTCCCCAGTCAAAACCTGCCAACTTGGGCAGGG-TACCA--AGCCAGGAGGAACAGCATGGGCACAGAGAGGTGAGGTAGAAGCTAAAATAAGAATAGAAATAGTAg s canFam2.chr12 4203363 1860 + 75515492 GTTGCAACATTG-CATGAATGGCTTGGAACTTGAGGCTGGCAAGAAAGCCACCTGTAGCAGGCTTTAGCAATTTAC--------TCTCATCACCTGGAACCACCATG-GTGTGGGAAGAGGAACCAGACCTGAGTGAGTGGGATCCTCTCACTCTGGCAGCTCTCAGACAGAAAGGAATAACATCGGGGAAGCAGATCATCAGATGCTGTGTGAGCACCTCACCAGAATGGAGACAGTGGATGCAGAAAGTGTTACCCTCCAAGTTCCCACCTCAGCTTATTCCAGGTTTGAGTGAGCAAAGTTTGTTGAAGGAGGGGTTCAGTCCAAGGGTAGAGCAACCTGGTGACTGCACCTCTGTGAAACAAATCCACTTCATCCTGGGGGCGGGCAGCCCTGGCATTCCCTCCCTAGAAGGCT-GGGATATCTCCCTAGTTCCCCAGGAGGTTCTAGGAGATCACTGGGAACCTCTAGAAAGCTTGTGTCCCT---------GCAGATA------CCTGGGGAAGAGCAGGGGTGAGCTAGTAAAGGCCACTGCTTGAAGGGCTGAGAATA-GAATAC--GGAAGAGTAGATGGGGAGGGTGGGGCGCACAAGAAGCTCCAGGCTGGATGCCTAGGTTTCTGAGAGAGCTC--TGCTGAGCGCAGGTGGTGAGAGGAGAAAGCAG-TAAGCTGGGCCCCAAAGAGTT-----------------TGGTAG--------------------------------------TGGAGTGGGGGACAGGGGATCTGGAGCCCTGGCAGGTTAGAAGAGTGGATCTT----GGAGGTGGGCAGAAGTG--TGAGATATGAGTCCTCGAGAAATGGAGCCAGGACCCTGTCACAAGGAGGTCTGGTTCTGGAGGCACAGGAGAGCTGCCGCATTTGGGGTTAGGGGTGCTTGGGATCCTGAGCAGTAGGCAATGGAGGGCAGTGGAGGGGGCAAGGTGCAGCAGTCCC--------------------TGGGGCCCCCCAGTGCTCACCTGAGACCCGGCAGAGCAGAGCAGACAGGGTGAGCAGCAGAAGACCTTTCATGATGAGGGTCCCGAGAATGGTAGTGAGGGCAGCAGCGGACAGAG---GTTTTCGGGCACCCAGCTCCCGCTCCCAGGCAGGAGTTGTGAGGCCTTTTTAGAATTTATAATCCCAACGGTCCCTCCCTTCCCTGCCCCTGGTGGCCCCTCCTTCCCGATTTAC-ACACAGATGACCAG------------GGATGGGGAGGGACTAAACTGAACTGGGTGAGGGAGTAGGGATAGGAGATAGGAGAGAGAGAGAGTGGAGGGTAGGTAC-ACTCGCGGCCAACTCCATCTTGGTTCTTGGTTTCAGGCCAAGACACCCCTCCCAGTTCCCAGCTGACATCCCTGCTGGCCCAGTCCTCTGAAAAGGCATCACCAA-GGCCCCTGTGATGTTACACTGGCTGTGGGCACAAGGCCTGCTGGACCCTGGGAAATGGACAATGGGGTGAAGCCCACACTAACTGCTAAGTTTGGGT-------TTCCTGGGGGGCATTGGTAGGGGCCCCTGAGCAGAAACTTAGGATAGAAGAGGCCAACTTAATCTGTATTCAGCCCTGACATGGTCTTCCCAACTACTGCTCAGCCACAGGATGAAGGACGAAGGGTTTGTGATATCACCAAGGGCTCCTGTGATATCACAACAGCAGAGGCATAGGCTGGAGCTGCCCACTGAGG--------------------------TGCTGTCTCAGGCCCTTA-GAAGGTTCTTAGAACTTGTCCTG-GCTAAACTAAGGCCTGGCCTGGCCT----GCTTTAGTTCAGTGAGGGCCAATGAAGTCCAGGGTGGGGC-ATATGCACCTGCTCCAGGGCGCTTCCCAAATCAAACCCTGCCAGTCTGGGTGGGGACACCATTGGCCAGGAGGGACAGGATGGGCATAGAGAGATGAAGTAGAAGCTAAAATAAGAATAGAAATTGTAA a score=2523 s hg19.chr6_ssto_hap7 3021468 103 + 4928567 TAGTAATaataatggcaagcacttacatagtgatcctatgtat----------tctaagcagtttacatgtattactttatttcgtta---tcacaatcccctacaaaacaggAGt s canFam2.chr12 4205223 116 + 75515492 TGATCataatagtgatgagcactgagtgagtgctcctgtgtgtcagccattgttctaggcattttaggtgtattccttttttaaaaaaatttctcaatactctgtgacataggtgc a score=44319 s hg19.chr6_ssto_hap7 3021745 884 + 4928567 AAGCATTTGTGTAAATGGCCCGAGCACACATTTTAAGTGAGAACCATTTGAAGACTCCGAGTTTGCCTGCGAGGATTCCCAAAGGGATCTGGGCAGCTGGTGGCCCCGCCCCCTCTCTTATCGGAGCCCCCCAGCCCCTCCGTTCTCCCCACG------CCTAACTTCCCTCCGGTCCCCCCCCAACCGGCCCCACGCCGCTGATTCGCTCGCAGCTTCTCCTCACCACATCCTAACCATGGCTGTGTTTCTGCAGCTGCTACCGCTGCTGCTCTCGAGGGCCCAAGGGAACCCTGGGGGTAAGCGATCC----CTGGGAGAGTTGTGATAGACGCAGAGGGGCTGAAGCAAGATAAGGGCCGCCTAGTAGGGTGG-GTTGTGTGTGGGAAGATCCAGGATGGC------TGGAGTGCAGAACAGAGA------AGAGAAAGAGGAGACGGGATGGAGGGTCGTCTTGCCCTGTGGACGTGCCCTAACCACAGCCTCCGGCCTCTCCTAGCTTCTCTGGACGGCCGCCCTGGGGACCGGGTGAATCTCTCCTGCGGAGGAGTCTCTCATCCCATCCGCTGGGTCTGGGCACCCAGCTTCCCGGCCTGCAAGGGCCTGTCCAAAGGACGCCGACCGATCCTGTGGGCCTCTTCGAGCGGGACCCCCACCGTGCCTCCCCTCCAGCCTTTCGTCGGCCGCCTACGCTCCCTGGACTCTGGTATCCGGCGGCTGGAGCTCCTCTTGAGCGCGGGGGACTCGGGCACTTTTTTCTGCAAGGGCCGCCACGAGGACGAGAGCCGTACAGTGCTTCACGTGCTGGGGGACAGGACCTATTGCAAGGCCCCCGGGCCTACCCATGGTAGGTGCAGGCCTGTGCGCACAAGGGTACTTAACTCCGACACATACCC s canFam2.chr12 4205733 865 + 75515492 AAGTGCTTCTGTAACCAGTCTGAGCACCACTTTCAACTGAGTATGGTTTGAGGGCTGTGAGCGATCCTGCAAGGACTCCCAGAAGGATCCTGGCAGCTGGGAGCCCCGCCCTGT-TGTTATCAGAGCCCCC-AGACCCGCAGGCCTCCCCACAACTCCCCCTAGTTTCCCTCCGGTCTCCTCCT-------------CCACTGATCCACTCACCTTCTCTCACCACCACACCCAGGCCATGGCCTTGGTTCTGCAGCTGCTGCTGTTGCTCCTGTTGAGGGTCCAGGGGGACCCCGGGGGTAAGCCATCCTGCCCCAGGAAAGTTGGGATGGGCTC---------GAGGGAAGACTGGGG-------GGGGGGCGGTGATGAGTGTGGTTAGATCCCGGCTGGCAGAAGTGGAAGTGCAGAGAGGAGATGAGAGAGAGAGAGAGGACGTGGGAGTGGGCTTTGTCC-GCCCTGCAGACTCGCCCTAACTCCTGCCCCCTCCAACTCC-AGCCTCACTGGACGGCCGCCCTGGAGACCGAGTGAATTTCTCCTGCGTAGGCGTCTCGCATCCCATCCGCTGGGTCTGGGCGCCCAGCTTCCCTGCCTGCAAGGGCCTGTCCAAGGGACGCCGCCCAATCCTGTGGGCCTCATCGAGCGGGATCCCCACTGTGTCTCCCGTCCAGCCATTTGCTGGTCGCCTACGTGCCCTGGACCCTGGTATCCGGTGGCTAGAGCTGCTCCTGAGCGCGGGGGACTCAGGCACCTTTTTCTGCAGGGGCCGCCACGAGGAAGAGAGCCGCACGGTGCTTCACGTGCTAGGGGACCGGGCAGATTGCAAGGCTCCAGA------CCACGGTAGGTCCAGGGCTCCGCGCTCC---GAACTTAACTCGGACACACACCC a score=51021 s hg19.chr6_ssto_hap7 3022871 1047 + 4928567 GTGGAAGGGGCAGGACCAGAACCTTCGCAAAAGAAAGAGCTAGACCTAGAGCTCTG--GTCCTGGCTTGGCGAAGAATGGGAGAGGTCAAAGGTGGGAGCGAGGCCGCTGACTGGTGAGTAGAGCC---------------CCACCAGAGCAGATGAGCTGGAAGTGCAGCAGAGTTAGAGCCTGGGCTGGACTGTCGGTGGGG-TAGAGTCTAAGTTGTTTCCGGTCTGAGCCTTCAAGTTGCTGGGCTGTCCTTGGCGTGGCGAGTCCCAGGAGAACCAGTGAGACAAGACTGGTGGTTCTCAAAGACTCATATGTCCCTTACAGGCGCCTGCCCCCGCAACCGATTCGACCACTCCCTAGATTTGGTGAGACTAATTCCACCCCATTTTCTTTCTCCTACATGCCCACTCCCCACCCCTCAATTCCTG-AGTCTGAGCCCTTGCTGGGAGCAGACACGTTGGTCACCTTCTCTCCATCCTTCAGCTCTGTCCCCCCCACATAGCTCCACTTGTGAAAACCGAGCCCCAGAGGCCAGTAAAGGAGGAAGAGCCCAAGATTCCAGGGGACCTGGACCAGGAACCGGTAAGGGCATGGGGATGGGAAGGGGAT-AGCCAGAATCTCTGAGGAAAATGGACCAAAAAAAA-AAAGGCCTGAACCCC-----AAGGAAGACTGTGGAGACCATCTTGTCTTCCTCCCCTTCCTCCTCCAGAGCCTGCTCTATGCGGATCTGGACCATCTAGCCCTCAGCAGGCCCCGCCGGCTGTCCACAGCGGACCCTGCTGATGCCTCCACCATCTATGCAGTTGTAGTTTGAAGGGAAGCCCTTACTCCAAACCTCCCAAGCTAGGGGATCCCAGCTCCCCATAATCCCTCTCCCCTCCTTGGTTCCTCACCTGGAAGAGGAaggcaccatggtatagaaataagtgctagactgggagttgggagacctgggttccaggctgtctct--gccactGGTCTTACTTCTAAACTTACTCCCATCTCTCCTATAACCTCCATGTCTCCCTCACCACCAGTGTCCTCTCTATACCCAATCAAGCCCT s canFam2.chr12 4206850 1026 + 75515492 GCGGGAGGGGCAGGACCAGGGCCTCCGTGG--GCCGCTGCTGGACCGAGAGCCCTGCCGTGC-GGCCTAGAGGGGAATGGGCGAGGTCCGCGCTTGGGCGGAGGCCCGGGGCGGGTAGGTGGAGCCGCGGCTAGGGAGGCGCAGCTGGAGCCG--GAGCCGGAGCCCCAGCCGGGTCAGAGCGTGGGCGGAACTGTCTGTGGGGGTGGAGCCTAAACTGTG-CGGATCGGAGCCTTGGAGTTGCTGGGTTGCTGCTGG----------------AGGAC----GAGACAAAACTGGTGGCCCTCAGAGACTTGTACATCCGTTACAGACGATCACCTCCGCATCCGCCTCGACCACTCCCCAGATTTGGTGAGACTAACTCCACCCCATTTTCCTTCTTCCACA------CCTCCCACCTCCCAATTCATGGAGTCTGAGCCCTTGCTGGGAGCAG---TGTTGGTCACTTTCTCTCAATTCTTCAGCTCTGTCTCCCCCATATAGAGCCACTAGTGAAAGTCGACTCCCAGAGGCCAGTAAAGGAGGAGGAGCCTAAGATGGCAGGGGACCTGGACCAGGAGCCGGTAAGGGCCTGGGGATTGGAAGGGGGCCGGCCAGAATCCCCAAGAGCAGTGGACCAAGAAGGACAGAGTCCTGTATCTCCCAGCAAGTCGGACTTCTGAGACC-CCCTGCCTCCCTCTCC---ACCTTTCAGAGCCTGCTCTACGCAGACCTGGACCATTCGGCCCTCAGAAGGCCACTACGGTTGTCGCCAGTGGTTCCTGCTGATGCCTCCACCATCTATGCAGTTGTAGTTTGAAGGGAAGCCCTTATTGTAAACCTCACAAGCTGGAGG-------TTCTCCACAACTCCCGGCCCCTTCCTGGTCCCTCACCTGGAAAAGGAATGCACCGCGAGATAGAACTgagcactagcttg--agtcaggaaccctgagttccaggctatctctctgccactgatcttgctccttcagttac-ctcatctctcCTATAACCTTCACGTCCCCTTCACCACCAGTGCCCTCTCTAAACCTGATCAAACCCT a score=298112 s hg19.chr6_ssto_hap7 3024223 5466 + 4928567 TTCTTTAAGCTGTTTTTCTTTGTTGCTGGTGTTTTCTTTTTGGA----CTCCTCTTCCTTGCTCCATATCCCTACAGTATTTCCCACCATTCTAGGTTTGTCCCTTTCTCT-------------TCTTCTGGGACACTCTCATCAACAGTCAGTCCTCAGCCCCCTCCTCtgcaaatgacactcagaactctctctggctcagatctcagatt-tgggattaacaaacttccacttagacattc-tgcctgactgacctcaggcatttcgcactctgaatgtcaaacccaactcattgtcatctctgaagctgctcacttaattctcctctgtattctct-ttaacaacccagttgcccaacccagaaactgggagtcacgcagacctcctttctctcttactcccacacaatgagccatgaagtccagtctttctatcttaacatcactgtcaaacccacactgtattccatgcc----cagc--gctgccacgtgaatgtactctgctcacttccttcctggattacccatagccccacctcatcctcctacccttgctttcctccctgaagtcagagagatcctactcaagagataaCTGCTCCTGACAGCCCTTATTACAGAACTGAAGTACTCTCCTTAGCTTCAGCTCTGTGCCCACGTGCCTTGGCTTTGGATACAAGGTACTA-CAGCActttgtccactctccaggcttacctgtgtcattccacatgcacatcttagaaaatgccagccttagag-aattctccctagccccaaaat--gtctttgcc-cagtgcaattccttcttcctgtattacccctttccctccttcacactatctgcctggctaattcttatttatcc-------ttagttcaagtatggccttttctgggaagg------tgaccctccttggccaccccttgcatatactttgatgccctagggcacaccccctttatttccctcatagaaacagccttctgtaaattgttccatgacaacctgtatttcaatttgtaagaaatttgcatgtactgt-gagctccccaacgtcaggagactgACCCTTTTG--ATATCATTGCTAAGCCTCATTAAATGAATGAATGAAAATGAATG-TCCCTGGAAGTGTCATTTCTTTTTCTTTATCAAATAGGGGTGGACTGGTAATCTACCAGTCTCTGAATCATCTAACATTTAGATAAATTCAGTGAGCAATCCACCCATACACTCTTTTCTCTGCCCTGGACACACTTCCCATGATAGAAATTCTGTCTTGTTCATCTTGTGCTCAAGTACCTATGACATGGTTGGGCAATGAGTTGATAAGTACCTAACAAGATTTT--TGAAT--AAGAGGCCTTCTTCCCTG-CACTGACCCCAAACTCAGGTTTCAGCCCTGCCC-TATCCCTTTGCCCCAGTAAGACACCAGTCACAGCCCAGTCTAAAAGGTCAATTCTATTTTATTGGTTCTGAGAGGGAGGATTCACCCAGTGGA------TCCTTTTCCCTACACT----CTCCCCTCCCCCAATATTGAGGCTCTCTCCCAACTACTGCCTATTCAGCATTCTCTATCTAACCCTCCTTCCCCTTCTACTTCCTATACTATCCTACCCCTGGCCAGC-AGTACCCCAAGGCCAGGCCCTCAGCTGTGGGGGCGTGTGCTGAGCACCAAGCAGAGGGAGCTGAGCCCGGCGCCAGCCTTCTCCAGTTCTGAGCAGGACACAGGTACCAGGGTGACATCAGAGAGCTTCTGCAGTGCCTGCACAGGGAAGACATGGAGTGGGGAGAGGGGAGTGA-GACCTCAGGCTG-AGCCAGGCCACTCTTCCAGCCAGCTCAGAGTGGCCCCACCCAGGCTTCTAGAGAAGGTACCCTTCCTTCCTCCCACTAGGAAAGCCTGAAACTCTTTTCTCTGATGGTGCTTGGTGTTGGAGTTCCTGCCCTCTCTCACCTCCTGGCTGTTGGGCAGATCCCCACCTCCACGGTGCAGGAGGAAAGGGGGCACACCAGGCAACCCAGGACGAAGAAAGAGACAGTCAGCAGCTGCGTCATCTGGGAGGGTCAGGGAGGCATATGGGTGATCTGTCAGCACTGCCATTGCCT-----AGAGGAAAGAGGAAGTGTTCGAGTCTCAGAACCTCTCCACAGCTGTGTCTGCCTGCTCAACCACCACTAAGGGCTGGGGACGGACTGACATTTG-TGGAAAATAATGACAGCAAGCACATAGAGCTTACGATATGTCAGACACT------------AAGTACTTTAGTTACCTTTGCTAATTTCCACCTTGGAATCACATGCAGTTATTTTCAACCCCCTA---ccttccccagccc-ctcctatctgtcctacccatccttagagtcacagtttaggtgccacctttggg--gtttcctgaaactccggaagagcaaattaatcacccctgttcccagtc-ctgctgtt-gtaacttcttattttctcctgtgttctttcatgtaagatggacagcccattgagggcaggggttagggctaatttCCTAAGCCTCCCAGCTCCCGGCCTCCC---GGGCCCAGAA-CTGCGCCCACTTTCGTTGGCCCCGC-------------CCCCTCCTCACCCGGACAGCCTTTTGGGCAGCGTCGCTGCTGCCTGCCACAACAGTGCGAGGTCCCCCCATGCCGCAGAGACCGCGCAGGTGGGAGGGACCCGAGACTGGCACAGTGGAGACGGCGAAGTCCTAGGGAGAGCGAAGGGAGGTATTCAGGGGCGCGGGAGGGGTGATGGGGTATCTTCAAACATAGGCTGCTCTCTGCCTCTCATTTCCTCAGCGGGCGCCCAGGCCCTTCCGACCCCCACCTGCACCCCCTC-----CCTCCCTAG------GCTGGTCCCGCTCCGCACCCGGAAC-GTGTCCGCCACGATCTCAGCTCCTCGGTGATTGGTCCATTT-------------------------------------------------------------------------GGAGAGGCCTACGAAAAACTCCCGGCCTGAGTCC-GGGAGGCCGCGGAGGTTTGAGGGCGGGAGTGAGTTAGAAACAAGGCTCCAGACGGCCGAGTCTCCCAAACTCTACTTCCCTGTGCCAAGACC---TATGCC-TCCCCCCAGCCTCACCGGTGAAGAGAACGTCAGTGCCATCCAGCGTCGCGTTCTCGTCTCCTATTTCCACAATTCGGAGCCCCAGGTCTTGCAGGGCTTTGCGGACTCCATCGACCTTAGGATAGGAGAAGAGGGCACGGAGCTGTGACACCCCCATCCTCAATTCTTCCCCAAAGCCCCG-ACATCCAGTTCCTTCTGCCTTTCCCCATACCACACCCGCGCCACGGCGCTCACCTCTGGCCTACGAGCGGGGCTCCAGGGCCGCGTGATTAGGGCCGTGTCCCCTTGGATCACGGCCGTGTCGCCAAGCAGCGGTCCCAGCGGCAATGACTCCTCAGGTGGCAGTTCTAGCAGCTGTAGCCCCAGTCGTTGCCTCAGTTTACCTCCCAGCACCCCGTGCTCCCTTTGAGCTTTGGCCAGATCCAGAGCGGGAAGGCCAGCCCCCGCACCTTCCCCCGACGCCAGGCTCTCTGGGACTCCCCGGATCAGGGCATGGGAGCAGCGGCCCAGCCCCTCCCCCGGCGTCCCCATCCCATCCACACAGACTCCCCCTCCAACCGCTCGGATTTC-TTAGTTTTCTTGTTT-CTTCACCTGTCTGGGAGAAGAAACAGAAA-AGGAGGAGACAGAGAAAAAGACATGCAGACAAGGGCGTTGGGGG-TGGTTAAGAGCGCCCAGGTCTTCCTCCTGCCATCTCTAGGCGTCCCTCCCACTCCGCCCCACCCACTCCAGACCTTCCGCTCCTGTCGACCTCACTCTACCCAGCACCCTCAGGGGTCAGATTCTTTAAGAGGAGCCTGAGGAACAAGGCTAGGGTCTCTAATCTCCAAAACACCTGTTG-CCCCTGCTTGGGGGCTT-GTGAGGTCCCTGTCGGGCGCCCCTCTTGGCAGCCACTAGGATGCGCTCACTCCCCAAAAATGCAGCAGCCCCGCCCCCTTAACCCTCAGCTGCTCGCTACCGCAGGGACTGGAAGTCCAGCCCGCGACCCGCAGGGGTTATGGGACAGAAGGAGAAAGCTG----GAGAGGCAGGGGCTGGGGAATGGAAGTCCTGAATACCCGAACGAGA-AGGGAGAGAGGTGGGTAGGAAGGGAGGAGTTCGAGCCTAAGGAGTTAAGCATCCTCTCTCCGCCCTGGCTGGTCACGCTGCCCCTAGCGCGACCTAGTATAAACCAGACCGAGTCCCGAAGGACTGGGAGAGGTCTAAAACGAAATGCGAGGGGCGGGGTAACAGGGGGCGTGGTTCCGGGGCGCTGGCACTACTCCCGGCTCCAGGACCCGGT-TCCCCGTCTATGT--CCCAAAGTCCACCCCGCCTAGCTCCGCGCCCAAATACCGGCTCCCCATACTCTCTGTCTGGTGCAGGCATGGGCCCGGCACCCCCAAACTCCGGCCC-CCACACGGTTCAGGG-----CCCCCCACGCAAGACTCACCTCCAGCGGCCACCCCCACTCCTGTCGCGCTGTGATCTCGGCTGGGGCCCCACCCCCCGAGGACAGAGTTGG-TGGAGAAGGGAGTCCCCGTCTTCAAGCCTCGGGGACTGGGAGCTCTGGCTTTTAGCGGGGGTCCTTGTGTAGGCGAGCTCATATACTACGATGGGGCAGGGGCGCGACGGTCTGGCGGCTCCGGGGCATTGTCTAAGCGGGACGGGGCGGGGCTTCTTCGGGCCACGCCCATTCCGCCCTGCTAAGCCTCGCCCATTACATCCAGACTGCGCCCCCCTTGCCAGAAATCGGCACCGCCCAGCGAGCGCTGCCCAGGCCCACCCAGATCTGGCCGGCCCTGGCGACGGGGCTGCAAACGCTTCGTAGACCTCAGAACAGCGCAACGGCGGACCGGCGGACCGGCACGAAACATAGCAGCCCCACCACAAACATTTCCCTTCTTAATTCCTGGCTTCTGCCCTGAGCTCAAGATCACTGACCCACCCCTCATTCCATGTCGCCCACACTTTAAACCCCCATTGCGTAAAA--ACACTTGATTTTTATTCTGTATTTTATTACTGAAATATGTTGTCCTACTCATCCCACCCCACAATAAAAATCTGACCCAGGCCCCCCATTTCTTTCCCTCATCCCCTCTTCCACCACA-CCATCCCGGAACAAGTGCTCCAGGATTCCCTGCCCACTGGCCATTTTGGAGTGTGTCCATTGGGTAGCAATGTGGAAACCACCAGG-GCCTTTGTGGAGAAAATGGAGGGGGTTGAGGGAGTCCCAGGAGGGGCTTATTTGAGGGCCTTTGCCACTTGCTCATAGGCGAGCTCGATCTCCTCATCATCTGGACAGGTGGAAGCGAATTCTTCCCGGGCGTAGGCATTGCTCAAGTACCGATGCACTCCCCGGAAGGCCTCGGGGATGGTGAATCCCCGGTACTTCTTACACACCACCTGAGGATGGGGAGAGGAGAGGGACCAAC-----ATGTTAGACCCAGGGAAGCCAC---------------CTTGG-CTTTCCCTTCTCCCCAGGCCGACATGATAAAA--------------CCAG s canFam2.chr12 4208061 5549 + 75515492 TTCTTTAAGCTGTTTTTCTTTAAGGCTGGTGTCTTCCTTTTGGAAAAACTCTTCTTCCTCGCTCCCTACTGCCTTGCTATTCTCCACCATTCTAGGATTGTCCTTTCCTTTATCTGACTTCCTCTCTCCTGGAAACCTGTCATCCACAGCCAGTCCTCAGCCCTTACCTCTGCAAACAACCCTCTGAATTCTCTCCAGCTCAGATCTCGAGTAATGGGATTTCCTATCTATCCCTGGGACATCCCTGCCTAGTCAGCAGTAGGCATTTTGCACACAG----------------CATTGTCA------------CTCACTTAATCTTCCTCTGCATTCTCCCTTAATCAACCAGTTGCCTAAGCCAGAAGCTGGGAGTCATGTAGACCTCCTTCTGCTC--ACTCCCACACAATGAACCA---AGTCCTG------------------------AAATCCATACCCTTCTTCACACCAATTCAGCTGGCTGCCACTTGAATATACTCTCCTCATTTCTTCCCTGGGTTACTCATTGCCTCACCTCATCTTCTTGTCCGTGCCCTCCTCCCTGAAGCCAGAGAGATCCTCCCCAAATGTTAAC--CTTCTCACAGCCTGTATTCCAGAGCTGTGGTATTT-------CTTCAGTTCGGGACCCATGGGCCTTGGCTTTGGGTACAAGGTGCTGGCAGCACTCTCCCTACTCTCCAGGCTTGCTT-TGTCACTCCACATTCACAC-----AACATGCCAACCTTGGAGTgattctccccagcctccaaatatgcctttgacacagtgcaagtccttcttcctggatcaccctttttcctcctccccactaccgtcctggccaattctt---tatccccaggactcagttgaaatatagccgtttctgggaaggcattcctgaTCCTCTTTGCCTACCCCT-GCATATATTTTGATGCTGTAGGA---AGTCTCCTTATTCATCTCATAGCAACACCCT---GTGAATTGTTCTATCACAACCTGTATTTCAATTTC-----------AATGTACTGTTGAGTTCCCTGATATCAAGAGACTGACTCTTTTTTTATATTACTGCTAAGCCTCAGTAAACGAGTGAATGAAAATTCACGAGCCCTGGAAGCAACACTTCTTCCTCTGTATCCACTAGGGGTGGGTCGGTAATCTCGCAGCCTCTGAAACATCTGACATTTAGATAAATTGAGTGA----TCTGCCCATAATCTCTTT-----ACCTTGTATATGCTCCCCACAATAGAAATTCTATCCTGCCCATCTTGTGCCCAAACACCT--GATAGGGCTGGCCAATGAGTCAGGAAGTACTTAATAAGGGTTTGATGAATGAAAGAGACCTCTTTCCCAAACACTAACCTCAACCTCCGATTTCAGCCTTGCCCCTATCCCTCTGCTCCAATAAGACACCAGCCACATCCCAGTCTAAAAGGTCAGTT--GTTTTATTAGTTCTGAGGAAGAGGACTCACCCAGTGGACTCTATTCCTTTTTCCCACACTAAGCCCTCCCTCCCCCAATCCTGGGGCCCTCTCCCCACTACTACCTAGTCCCTGTCCTCTATCTAAGCTTCCTTCCCCTTCTACTCCCTCTGCTGCCCTACCCATGGCCAGCCAGGACCCTGAGGCCAGGCCCTCAGCTGTGGGGGCGTGTGCTGAGCACCAGGCAAAGGGAGCTAAGACCGGCGCCTGCCTTCTCCAGTTCTGAGCAGGACACAGGTACCAGGGTGACGTCAGAGAGCTTCTGCAGTGCCTG--CAGGGAGGACACGAAGTGAGAAGAGGGGAGTAAGGACCTGAGGCCACAGCCAGGCCCTTTTTCTAGCCAGCTGGGAGTGGCACCACCCAAGCTTCTAGAGAAGGTACCCCTTCTTCCTCCCACTAGGAAGGCCTAAGACTTCTTTCTCTGATTGTTGTTGTTGGTGGAGCTCCTGCCTTCCCTCACCTCTTGGCTATTGGGCAGGTCCCCACCTCCACGGTGCAGCAGGAAAGGGGGCACACCGGGCAGTCCTGGACGTAGAAAGAGACAGTCAGCAGCCGCGTCATCTGGGAGGGTCAGGGACGCATAGGGGTGGTCTGTCAACACTGCCATCGCCTGAGGGAGAGGAAGGAGGAAGCAGTCAAGTCTAACAGCCTTTCCACAACCAAGTCTGGTGGCCCTACCACCATTAAGGGCTGGGGACACATTTACATTTGTTGTATAATAATGAGCTCAAGCAC-TTGCCCTCAGTTTGTGTCAGGCACTGCTCTTAGTGACAAAGGTCTTAGTAACCTTTGTTAAGTTCCGACCTGGACTCACATGCAGTTCTTTCTACCCTCTTGTCCCCTTCTCCAGCCCACATGGGTCAATCTCATCTATCCTT--TGTCATAGCTTAGACGCCCCCTTTGGGAAGTTTCTTGAAACTTGGGAAGATGATGGTAATCGACTGTACTCCCTGTCTCTGTCCTTAGTAGCGTCTTGCTTTCTGATGCGT--TTTCACACTAGATGGACGGCTCCGTGAGGGCAAGGGTTGAAGTTAATTCCCCAAACCTCCCAGCTCTCCGCATCCCCCAACCCCCAGAAGCCAAGCCTACTT--GTTGGCCGCGCGCACCCAGCCCCGCCCCTCCTCACCCTGACAGCCTTTTGGGCTGCGTCGCTGCTACCGGCCACCACAGTGCGGGGCCCCCCCATGCCGCAGAGGCTGCGGAGGTGGCAGGGGCTCGAGACCGGCACAGTGGAGACAGCGAAGTCCTAGGGGCAACAAAAGAAAGTATTCGGGGACGCGGGAGAGGTGAGGGGATTCCCGC-------GTTTGCTCGGGGCTTCTC-CCTCTTCGGCGCTGCCCC---CCCTCCCCACCCCC-CCAGAATCCCCACCGCCGCTTCCCCAGCGCGAAGCCTGTCCCGTTCCTCTCCCGGAACAGTGTCTGCCACGATCTCAGCTCCTCGGAGATTGGGCCACTTGGAGAGATCTACGAAGAACTCCAGGCCTGAGCCCNTCTGCCACGATCTCAGCTGCTCGGTGGTTGGTCACTTGGGAGAGGCCTACGAAGAACTCCCGGCCTGAGCCCAGGGAGGCCGTGGAGGTTTGAGAACCACAGTGAGTT--GAACAAGGCCCCACCTGGCTCAGACTCCCCAACTCTGCTTCCCAGCGCCAAGCCCAGGGATGCAGGCACCTAAGCCTCACCGGTAAAGAGAACATCAGTGCCATCCAGAGTCGCGTTCTCATCCCCCATCTCCGCAATCCGGAGCCCAAGGTCCTGAAGGGCTTTGCGGACTCCATCGACCTTAGGGCAGGA-AAGAGGGCGCGGGGCACAGACATTCCCACCCACAATTCGT----AAAGCCCCGCAAGTCCAGCTCCT----CCTTTCCCTTTATCCCGCCC--------CCCCTCACCTCCGGCCTGCGGGCGGGGCTCCAGGGCCGCGTGATTAGGGCCGTGTCCCCTTGGATCACGGCGGTGTCACCAAGCAGCGGTCCCAGCGGCAGCGACTCTTCAGGAGGCAGTTCTAGCAGCTGCAGCCCCAATCGCTGCCTCAGTTTACCCCCCAGCACCCCGTGCTCCCTCTGAGCTTTAGCCAGGTCCAGAGCCGGGAGGCCAGCCCCCGCACCTTCCCCCGAAGCCAGGCTCTCCGGGACCCCCCGGATCAGGGCATGGGAGCAGCGGCCCAGCCCCTCCCCTGGCGTCCCCATCCCATCCACACCGTCTCCCCCTCCGGCCACGCTGATTTCTTTAGTTTTCTCTTTTACTTCACCTGTCTGGGAGAAAAGACAGAAAGGGGAGGAGGCAGAGAAAGAGACATGCACAGAAGGGCATCGGGGGATGGTTAAGAGCGCCTGGGTCTT-CTTCTGCCACCTCCGGGCGCCCCTCCCACTTTACCCCACCCCCTCCAGACCTTCCTTTCCTGCCGACCCCATTCCACCCCGCACCCTTCTGGGTCGGCTTCTTTGGATGTAGTCTGAGGAACAAGATCGGGACCCCTAATCTTCAAAACACCTGTTGCCCCCTGTTCGGGGGCTTCGCGAAGTCCCTGCTAGGCGCCCCTCTTGGCAGCCGCTAGGATGCGCTCACTCCCCAAAAATGCAACGGCCCCGCCCCCTTAACCCTTAGCTGCTCGCTGCTGTAGGGACCTGAAGTGTGGCGAGGGACCCGAAGGGGTTATGGGCCAGGAGGAGACAGCTGCGGAGAGGGTCGGGGTCTGGAAGATGGAAGTCCTGAACGCCCGAACCGGAGAGGCAGAGAGG------GGCAACGAGGAATTAGAATCTAAGGAGTTAAATATCCTCTCTCCACCCCGGCCGGCCGTGCTGCCTCTAGCGCGACCCAGTATAAACCAGACCCAGTCCCGGAGGACCGGGAGAGGTCTAAAACGAAATCCAAGGGGCGGGGAAACCGGGGGCGTGGTCCCAGGGAGCGGGCGCCACTCCCGGCTCCGGGACCCGGTCTCCTGGTTCATCTTCCCCAAAGTCTACCCCGCTCAGCTCCGCATCCAAATTTTGGCCTCCTGCACTCT-TGTCCACTGCGGGCACGGGCTCGGCACCCTCAAACTCCAGCCCTCCACACGGTCCAGGGGACATCTCCAATCCCTAGACTTACCTCCCGCGGCTACCGGGACTCCTG-CGCTCTGTGATCTCGGCTGGGCCCCACCCCCCTGAGGACAGAGTTGGTTGGAGAAGGGAGTCCTAGTCTTCAAGCCTCGGGGACTGGACCTCTCGGCTTTTG--AGGGGTCTCCGGCTAGGCGAGCTCAAGAGCTGCGGTGGGGCGGGGGCGCGACGGTCTGGCGGCTCCCGGGCATTGTCTAAGCGGGACGGGGCGGGGCCCCCG-AGACCACGCCCACTCCGCCCCGCTAGGCCTCGCCGGCTCCGCCCGGACTGCGCTCCCCGCCTCCGAACTCGGCCCCGCCC--CCAGTGCTGTCCAGGCCCATCCAGATCTGGCTGGCTCTGAGGGCTGAGCTGCAAATGCGACACGGACCACGAGACGGCCTTACGGTGGACCGGCG--------CGAAAAATGGAAGTCGGACCACCAATACTCCGCTTCGAAATTCCTGGCTTCTGCCCTGAGCTCAAGGTCACCGACCCACTTCTCATTCCGTGTTACCCACTACTCAAGCCCCCTTTGTCTAAAACGACACTGTATTTCCAATCTGTATTTTATTACTGAAATACACTGCCCTACCCGCACCACCCCACAATAAAAATCTTACCTAGATTCCCCA----------TCATCCCCTCCAGCCCCCCAGCCAGCCCTGTAGAAGCGCTTCAGGATTCTCTGCCCACTGGCCATTTTGAAGTGTGTCCTTTGGGTAGCCACGTGAAAACCAGCTGGTGTCTTTGTGGAGAAAATGGAGAGGAGAGACGGAGCCTCAGGAGGGACTTATTTGAGGGCCTTGGCCACTTGCTCATAAGCCAGCTCGATCTCCTCATCATCTGGACAGGTGGAGGCAAACTCTTCCCGAGCATAGGCATTACGCAAGTACCGATGCACTCCGCGGAACACCTCTGGGATGGAGAATCCCCTGTATTTCTTACACACCACCTGGGTGTGGGGAGAGAAGAAGGACCAACATGTTATGTTAGCCTCGAGGAAGCCACACTAGCTGCTAGGCTCTTGGTCTTTCCCTTCTCCCAAGACTTATGGGATAAAATCTAGCCTTCCTGTCCAG a score=5745 s hg19.chr6_ssto_hap7 3029689 203 + 4928567 CTCAACTCCTCACTGTCTTGTACTGTCGTTAGCCTTCCTTCTCACTTACTGAAATCCTGGCTTTTAATAACCA-----------------------------GCCATTT-----TTCCTGAGTTTTTAAAACTTGAGATATAATTTAC---TTATAAAATTCTCCTCTTGAATTTCCACAGTGACTTTTTCCCCCTATACCACTTCAGGCACTGACACAGGTGACTTTTGTCTCTATATT s canFam2.chr12 4213919 192 + 75515492 CTTAACTCCTCACTATCTTCTCCGGTGTTTGCCCTTCCTTTCCACTTACTTAAATCCTGGCCATTTATAACCAGCTCCTTTTCAGACCACCTGTTCCATGGTGCCATTTCTCTCTTCTTGA--TTTTA----TTGAAATATAATTCATAAATCATAAAATTCTCCACTTGAATTTCCA------------------------------------------GTGACTTTTGTCCCTATTTT a score=53955 s hg19.chr6_ssto_hap7 3030195 950 + 4928567 CATCTGACTTTTCATCATATATT----CTTAACTTTCATGTGAATATTTTATTGTCTC----AGATTTC-AACCCTTTGAGAGCAAGGCCCAGTCACCATACACTTGTGTATCTTTCAATGCTTAGTACACAGATGTTCACTACATAGTTGTGTGGCAGACTGATGTCAGGCCCATGTTGCACAAACTAAACCATAGCTTTGAGACTATGACAAAAACATGGGAACCAGCAGTTTTGATCTT---CCACAAGAGGAAGTGAAGACTGAAGTTATAAAGAAAGTTAAAGCTTTGACTTTAGGAAAAGCCTGCTCTGTCTAATCTGGGAATTTGGCAGTGATACCGAGACAGGAAGAGCATTCTTCAAAAGTAATACTGGGATGTATTCCTCTTTGCTAGTCTGTTTGCACCCATGACT--TACATCATGGAATATAATTATCTCAAGCAGTGGTCTTGTT-----------AGCAATGACTGCTGCAAAGGACTGGGGTGGGGTCTGCCATTGGTAGCAATTTATGAAAACCACCCTAAGAAAGAAATCGTCTTTAGAGTGGTTGTCAGGGGAAGCCCATGTGGGAGCTCCTTAAAGGGCCACTCCAGTGGTCATCCTCTCCTCCCGCAATAACCACACACCTGTACTATGTGTAACTTTGGCAACAGGTTGCAGTCAGCCAGGGTGAGCTCGTTGCCATCCAAAAACTTCCTCTGAGAGACACCTTCATCTTCAGCACTGGTTTCATCCACTTCTTCTGGGAGGGGGGATGTTAAGTAATTGTCTAAAACCTTCAGGGCTTTCAGGAGTCCCTTCTCCAGATCTGTGCAAGAGA-GGGAACTGATTAGAACTTCAGGAAAAGATTGACATAGTCCGAAAAGGCCCG--------------TTGGGGG------------TGGATACTAATGGTGAGT--------------------------CCAAAATaataatagctaacactcatgtagttacttttctatgtgttattctaagcactttacat s canFam2.chr12 4214112 1019 + 75515492 CATTTGGCTTTTAGTCATGCATTATTACTTAACTTTTGTGTGACTGTtttatcttcccagctagatttcaaatcctttgaggacaagggccaatcgtgatacatctctgtatctttcagtgcctagtacacagatgttcagtacagagGTCTGTGGCCAACTGACATTAGGCCAAGGTTTTATAAAGTAAACCATAGTTTTGAGGCTAAGACAAAAACATGGGAACCAGTAGTTTTCATTTTTCATCACGAGACAAAGTAAAGATGGATGCTCGAAAAAGAGTTAAGGCTCTGATTTTAGGAAAAGGCTGCTTTGTCTGATCTGGGGATTTGGCAGTGATA--GAGACAGGAAGCACACTCTT-GACAGCAATGCAGGGGTATGTTACTCCTGGCCAGTCTGTTTGCACCCACAGCCTATATATCACAGAATGTAATTCTCTCAAACACTGGTCTGGTTCAATTCTCTCAAGCAATGACTGGTGAGAAGGAATGGGAT---GTCTGCTATTGGTAGCAATCCCTAGAAACCATCCTAAGAAAGAAACCACCTTTGGAGTGGTTGTCATGGGAAACCAGTGTGGGAGCTTCTGAAGGAGCCATTCCAGTGGCCACTCTCTGCTCCTACAATGACCACCCACCTGTACTATGTGGAGTTTTGGCAAGAGGTTGCAGTCAGCCAGAGTGAGCTCATTGCCATCCAGAAACTTCCTCTGTGAGATGCCCTCATCCTCAGCACTGGTCTCATCCACTTCTTCTGGGAGGGGGGATGTCAAGTAATTGTCTAAAACTTTCAGGGCTTTCAGGAGCCCCTTCTCCAGATCTGTGCAAGAAAGGGGAATTTGTAAGAACATTAGG---GGAGTGACATAGTCCAGGAGGGCCTGGGGAGTGTGTGTGTGTGGGGGGGTGGTGGTGAATGAATACCAATGGTGAGCCAAATGAATACTAATGAATACTAATACCAAACTAATAACATCTGACAAAAACACAGTTAGTTTTccatgagttattctaagcacttcccat a score=173922 s hg19.chr6_ssto_hap7 3031739 3810 + 4928567 atcaacccatgaaat----aggtattgtcatcctaattttgtggatctggaaatggacttacagagaggtgaaatg-attgctcaaaattatacggctagttggatttgtactcaggtagtctggatctagagtgatgactgttcttaagcatgaccctattctgCCAGAAAACAGGCCAGCAGCC-----AACTAACGTCCTCAGTGGGGCAGAAGAGGCTAGGGAACAAATGAGAAAAGCTTAAAAGTCTTGGCCAATGAAAATGCAGGGAAATATAGAGGTAAAGCAAAAATG-------------GGAAGCTGGGGGAAATTTACGAACATCTGCTTCATCTCCCTGATATCTGAACGTCCAGGTGCCCCTAATGTCTCCTACCCGCTGGGTCCTCTCTATTCCTCCCAGGACCCAGGCCTCTGACCCACAAGACTCACTGTCATTGAGTGCTGGGTTTGAATTCTTGATGTAGGCAGAAAATTTGGCAAATATGTCCAGCCCAGCTGTGTTGGACTCAGGGTTCAGAGCTGCCAGCTTGGGGTACCTGAAAGCCAATGGGAAAAATGAGGTAAGATGTCTTCCTGGGAGGAACCTCAGCTAGCTCTCCTGCCCCAGCCCCACCACCATCTCTGTTTTCCATTTCTGCAAACTGTCTGTTTCCCAGAATCTCCCTGCTCCACCTCTCCACTTTCTGAGTGCCCCTATACCTGGGAGGGCACAGCACTGCCTCCAGAAATTCCTCAATCTTGTTGGTGTCTGTGTGCACTTCAGTGCCATACAGCAGGAATGGGAGCTGCCCCCCTGGGCACAGCTTCTGCACTGTCTCGGTCCGCCTGGAGAAAGGATCAGGAATCAGGACTGGAAATGGGGGTCAGGAAGAACCAGAAAGGGGGAATGGA-GGACGTGGGATAAGAAAGGGACTC----CAGGGGGAGGGCAAAAATGTTCATGACAGAAGGACT-------CGGGTGGGTGTGTGTTTGCACACATGTGTACACCAGGGGTGTTTCAAGGAACATAAGCAGGCCTACCTTTTGGTGTCAACGGTGGTAACATTGAAGGTGACTCCCTTGAGCCACAGTACCATGAACAGTCTCTGGGAGAATGGGCAGTTCCCAATCTTGGCCCCATCACTGCCAGCCTGAAAAGTAACCCCAA-CCCAAGGTTATGCCTGATGCACCCCACCCATCCCTAGGCCAGTCCCTGCATT-CCCACTCCCAGACCAGCTGTTTTCTGCCTAGTCATGACACATA-----------------CACTGTCCCCTCACTATGGGCTCTTTGCCCTTGGGCCTGGGTCAAACCTAAGGCAGATCAATGGGAAACTGTTTTGCAAAGGCAGGCTTCTGGTTCCCCAGACA-CTGAGGACAGGTGGGAGGTAGGTAGAGGGAGGAGGTCCTGGAGAACTTGGGAGGATCTGAATCCTAGAGAGGG-----------------------------------------------------------------AAGGGTGTGGA---ACTTCAGTGAGGCCAGAGTTGTAGGCTAGAAGCCTGGATTTCTGGGTTCCTGAAGGGAGTAGAGTCTGAAGACAGGAGAGGTGGGTGGGGTTTGGGAGCCAGAGTTTTGGTTCTCTACACCTCCAATCCAAGGTGTCTT-------TGGGTGGGGAGTCTAGTCAAGGGGCCCTGGGCCTCGCGCTAGAGATGTGGAGGGCCCTACAGAGAGGGGCTGCCCTCTAATTAGCAAGTGGTGACCTCATTGGCCCAAGGGACACCTCCCCCTAAGCTGAGGGTGATTCATCTC--TCTGTCTC-----------------CGGCTTCCTTCCTGTCAAGGATGTGGGGGAAGGGA-CAGTGAGGAT--GAGGCCTGGGCAGCTAAGG-----------CTACCCCTAAC-CTGCTGCCAGGGTCTCCCAGCACAAGTCCTCTGACTGCA-ATAACCATCCTCTCACAGGACACAGGGCCGGAATCTCTGCGGCACAGCCTCACCCACGAGTAAAAATAGCCCCGGAGGCGAATGTGAGAGTGAGGTGGGGACCACACCTAAGG------GGGCGGACCCAAGCAGGCTCCGACTTCCCTGGGCCCAGGGAGAGGGAATGGCTGCCCGAGAAA-CCCAAGCAGAAGGGAGAGGGAGACACAGGCAGAGACACACAAAGATGAGAGAAACAAAAGGGGGGAAGGGGAAAGAAAGGCGGCAGGAAAGTGGAGAGTGGGGAGACGTGCGTGCCAACGGAGAGACACAAACGGAGCGGGGAGAAGAGGACACTGTTAAGGAAGGGAGGGAGGGGCACAGCCAGGAGGTCCCAAGACTGGGAAATGAATGCAGCAGCGGTAGGGAGGGGAGCGGCCGCTGCAATCAGAGAGGGGCTGGGTGACACCGAGAAGCCTGCTGCCTGCAGTTTTGCTACCCAAATGCCATAGGACCATCTCTCCTTACCCACACCCGCAGAGAGAGGAGAGAGTTGGGGCAAGTCTTCTACTTC----TCCAACCCCCAAATCCCAAAATGCCCTAACCGAGCTCTTCTCCTCCGTCTGATCTCTCTCCCACCCATCCTTGTGGTAGCTAC-GTTAAACTCACGTCTTCTTGCCACCTCCCCTTCTGTCCCTTTCCCCAGTCCTGGGGATATTCAATGCCACCCGATCACCTCTCCAGCTCTGCTTTTCAAACTCCGATCCCAGTCTCCTGTTTTGTTCCGCCCCTCCAAAGCTTCCCAATTTACTTGCTCTCACTCTCAGGCCTCCCTCAACACACCGTCTTCCCTGAAGCGTCTCCATCcacacacacacacacacacacacacacacacacacacacacacacacacCTCTC-----CTACTGCACTACTCACCCTCAGATCTTGT---AGGGACACATGTCCTAACTGAGGTTCCCCTCTGTCCCTTCTAAACCCTGCTGGG-------------CCCCCACTGTCCCTTCACCAGCT------CGCCCTCTAACCCCACCCCAGTCTC-ACTTTTGGGAATTCTCCTTTTTCTCCA-CTTCCCTTCCTTTAGTCTGCTAGAAACTTGCACTTTTACAAACTTTTCAGGGTTGATCCTAGAATTCTCATTACTTGCTAACAAGTTAATGTCTTCCCCTCTCAAAACCACCCCT------CA-----ACCAAAGAGTGCACGTGGGATTGGGGGTGGGAGTCAAGGAGGGAAGGGATTGGGGAGTTAAGGCTGGACCGGGGGAAAGGTGAGAGTTGGCTTCCAGGAATTTGGG---TGGCTGAGGAGAGA---AGTGTTCTTACCTTCACGAACAATTCGACCTGCGGTTGTTCTTCAGCCATGGTTGCGTCGGGGACCAGGAAGTGGCCGTCCCTGGGGGAACTGGGAGGGGCTGGGACCGGGGAAGGCGGGTCTCACACTCAGGGACTCTCTCCCCTAGACCCAGGGCTGTCCCTTCAGCACAACACAAGCTCAATCAGACCTACTTGCACCCAAACTAGGCCTCCCCACCAGCCCAACGCACCCCACACCCAGCTCCTCCAGCTCGGTCCTCTCCCGGGCTGGATCAGAGAGCCGCTGACTCACCGACCGGCCCCGCCCTGAACCTGGGGAGGGGACTGGAGGGGGGCGGGACTCGACGATGTAGGGAGTGAGTCCGGAAGGGGAATCCTCGGATCTCCCACAGGAT-GGGGATGGGGGTGTTAAGGA---GGAGTCCTGAAAACCTCCTTGTTTCTCCGACC-TCTCC-TGAACACAGGACTCTTTT----CTGCCTCAGTTTCCCTGCTTCATTAATCTGAGTACAACCCGACT-GACCCTCATATAAAAAACTTGACACTAACAGCTTGGGCACACCCGTGAAGATTCAGGGATGGGGACTTCAAATGGAAAGGTGGTCGTTTAATCATTCTGC---ATTTCTTCCAGACTCCAATCCAAATTCTGGGTTGCTGGGACTGTGGTCTGAGAGAAGAACTCGGAAGTGGAAGGCTGGGACTG s canFam2.chr12 4215146 3812 + 75515492 atcaacccatgaaataaacaggcattgttatcctcattttatagatctagaaatggatttatagagagattaaatgaactgcccaaagttacatagcttgtagtgtttgtactcaggtcgtctggatcaagag---ttactattcttaagcaT---------------GAAAACAGGCCATCAACCAACCTAACTAATGTCCT-AGTGGGGGAGGAGAGGCTAGGTGACAAACGAGAGAAGCTT--AAGTCACAGCCAATGAAAATGCAAGGAAATATGGGGTTAAAGCAAAAATAAGGGGGCTGGGGTGGGAGGCAGGGAGAGTGTGCCAATAGCTGCTCCATCTCCCTGATATTGGGATTTCCAGAT--------------CCAATCCTTGGATCTTCTCCATTCCTCCTAGGACCCTGGCCTCCAACCCTTAAGACTCACTATCATTGAGTGCCGGGTTTGAATTCTTGATGTAAGCAGAAAATTTGGCAAATATGTCCAGCCCAGCCGTGTTGGATTCAGGGTTCAGAGCTGCCAGCTTGGGGTACCTGAAAGCCAGTGGGAGAAACAGGATAAGATATCTT-TTGCTGAGAACCTC----AGCTCCCCTGCTCCA-CCCCACCACCATTTCTGTTTTCCAGTTCTACAACCTCTCTCTTTCCTACAGTCTCCCAGCTACCCACCACTTCCTTTCAAGTGCCCTTGTACCTGGGAGGGCACAGCACTGCCTCCAGAAACTCCTCAATCTTGTTGGTGTCTGTGTGTACTTCAGTGCCATACAGAAGGAATGGGAGCTGCCCTCCTGGGCACAGCTTCTGTACTGTCTCGGTCCGCCTGGAGAAGAGGTCAGGCATCAGGACAGGAAAAGGGGGTCAGGGAGAAGCAGAGAGGGGAAATGGAGGGATGTGGAAAGAAAAAGGAGCTCTGGATGGAGGGAGGGCAAAACAGTGCAGGATGAAAGGACGAGGAGGATGGGTGAGCGTGTGTGTGCATATGTGTGTACATGAGGGGTGTTCAGAGGAACAGAAATTGGCCCACCTCTTGGTGTCAACAGTGGTTACGTTGAAGGTTACTCCTTTGAGCCAGAGTACCATGAACAGTCTCTGGGAGAAGGGGCAGTTCCCAATCTTGGCCCCATCACTGCCGGCCTGAAAAGCAACCCCCATCCCAAGGTTAGGCCTGGTACACCCAACCTA-CCCCAGGCCATTCTCTACACCGCCTACTCCCAGATCTAGCGTTCTCTGCCTAGTCAGGACAAGCAGCTCACTACTAAAAGCTCCCCACCCCCCAGACATGGGCTCTCCACTCTGGAG-GTGGAGCAAACCTAGGGCAG-----------------------AGGTCAGCTTCTGGCTCCCCAGAGAGTTCAGGACAGGTGGGAAGTAGGCAGAGGGACTGGGTTGGGGAGAACTTGGGAGGATCTGGACCCTAGAGAGAGCAGACAAATAGTAATGTAGTTTTACATGCTATTCTAAGCACTTTACCCACAAAAATTTAATCCTAAAGTCTGTAGAGAGACTTTGGTGAGGCCAGGGTTGTAGGCTAGAG----AGAGGCCTGGATTCCTGAATCGAATAGAGCCTGTGAATGGGCAAGGTATGACCGCTTTGGAAGCCAGAGTTCTGGTTCTCTACACCTCCACT-CAAGCTGTTTTTGGCAGCTGGGTGGGG-----AGTCAAGGGGCCCAGAGCCTCACCCTAAAGATGTAGTGGGCTTTGCAGAGGGGGGCTGCCTTCTAATTGGCAGGTGGTGACCTCATC-CCCCAAGGG--ACCTCCCCCTAGGCTGAGGGTGATTCATCTCAGGCTGTCTCGCAGTCTCTGGCCTCAGCAGCTTCCTTCCTGGCAAGGA-GTGGGGGCAGGGACCAGGGAGGCTGAGAGGCCTGGGCAACGGAGGGCCACCTTCCTCTTCCCCACGCACTACTTGTGGGGTCTCCCAGCACACAGCCCCCAGCTCCAGATAACTCTCCTCACACTGGACCCAAGGCCAGAA--TCTGTAGCGCAGCCCCACCCAGGAATAAAAACAGCCCTTGAGGCTGA-GTGTGAGTGAGGTGGGGACCACACCTAAGGGGGGGCGGGTGGACCCAGGCG---CCAGGCAAGGCTGGGCCC-------GGGAAAGGCTTCCCTAGAAGCCCCAAGCAGAAAG--GAGGGAGAAAGTGGCAGGACCGCACAAAGGAG-GACAAACAAAGGGGGGTAAGTGGAAAGAAAGGCGGCAGGAAAGTAAAGGGTGGGGAGA---ATGTGCAAACCAGGAGGCCTACACAGAGAGG--------------------------------GAGGTACAGAGATGAGATCC--AGGCTTGGGGAAGAACGCCCCTGCAGCAGGGAGGGGAGCGG--------AGCAGAAAGAGT--------------GAAGTCCGCTGTCTGC-GCTTTCATCTCCAAGGGCCAAAGGACCACTGTTCCTCATCCACACCCAGAGAGAGAGGACAGAGTTGGGGTGGCTCTCTTTTTCCTGTTTCTAAAACCCCAAGCCCTCAACAACCTAGCCCAGATCTCCTC------CTGATCCCTCCCCCACCTACCCTCATGGTAGCCCCAGCTAAACTCCCA---GCTTGCCACCTCCCAGTCTCTCGCTT--CCCAGTCCCGGGGACCCT---TCCCCACCCACCCCCTCTCCAGCCCCGCTGCTAGAACTCCACTCTCATTCTCCCATCTCCTTCCACCTCACCAGTCCACCCCCGAGGATTTCCTCTC-------GGCCTCTCTCACCACACCCTCTTCCTTGAAA-----CCAGCCCTGC-----------CAAACACACGCGCGTGCACACACACACTCACATTTCTCCAAGTCTCCCCCAAGACACACAATCTGGTCTTCTCCCAGGACCACCTGTCCCAATGTTTCCTTCCCTCTGACCCTCCCAAATCCTGTTGGGTTTCAGTGCCCCCTTCTCTCCGTCTTCCCATCAGCTGGTTCCCACCCACCTCCTCCACAATATTCTCAACTGTTGGGAACCCTCCCTTCTCCCTACCTTCCGGCCCTTTAGGCTGCTGGAAACTTGCACTCGTACAAACTTTTCAGGGTTGTGCACAGAATTCTCATCACCCGCTGGCACA--ATCGCCTTCCCGGCCC--GACCACCCCCGCGATACAGGCACACCCAAGATTGCACCTGAGGCTGGGCA-GGGGGTCTAGGTGGGAAGGGACTGGGGAGTTAAAGCTGGAACTGGGGAGAGGTGAGAGGTGCCTTCCAGGGATCGGGACACTGGCCTAGGAGGGAGACAGTGTTCCTACCTTCACGAACAGTTCAACCTGAGGTTGTTCTTCAGCCATGGTTGCGACGGGGACCAGGAAGCGG-CGGCGCTGGGGGAACTGGGAGGGGCCCGGGCCAAGGAAGGCGGGTCTCACAAGCAGGGAGTCTGTCCCCCAGACCTAGGGCAGTCCCTTCAGCGCCACACGAGCCCGATGAGACCCGCTCACACACCCAC--GGCCTCCCCAACGGCCCAGCGCACCCCACATCCAGCCCCTCCGGCTCTATCCCCTCCCAGGGTAGATCAGGGAGCCGCTGACTCACCGACCGGCTCCGCCCTGAACCTGGGGAGGGGACAGGAGGGGGGCGGGACTCAACGATCTAGGGAGTGGGTCGAGAGGGAGAGCCTCTGGGTCTCCTAGAGAGTAAGAGATGGGGGTGCTAAGGAGAGGGAATCCTG-GAACCTCCGTGTTTCTCCACCAGTCTCCTTGAACACAGGACTTTTTTTTTACTGCCTCAGTTTCCCTGCTGCGTTAATCAGGAGACACTCCCACTCCACCCTCACCCAAGAAACC--ACACCAACAGCTTGGTCAAGCCCGTGAGGGCCCAGGGAGGGAATTTTAGAATATGAAGATGATTGTTTATTCCTTTTTCCATGGTCCTTCCAGACTCCAG------------------------------CAGGACAGGGACTTGGAAGTGG-AGACTGAGATTG a score=73285 s hg19.chr6_ssto_hap7 3036075 1659 + 4928567 GGGATGGGAAGGGAGATGACGAAGTCTTTTGCGAAGGAAACATAAAGCCGAGGCAAGGGGCTTTGTTGCAGGGAGGGGTCTGTTCCT-----GTAGCTTGGTCAGCTTT-GTGCTTCCACTTATGTTTCCTATTGGGGCCCCTTCCTGTGCCCTTTGTCCTCGTCTCACTGACAGGTTGCCTTGGAGATGGGGCAGAGGGG-----------TGGGATTATCATGGCCCGATCCTGAAGTATGTGTATAGGGGGTG----------GGGTAGGGGTGTTGTTAGCTGGTCCTGTCATGGGGATAAAG----AAAGATCAGACAGAATAGTGGGAGTAGAGTCCTTGGGGACACCTAAATAAATAAGCAGGGAGGACATAGGAGGAGCAGCTCTCTCTCCAGTAACCTTG--ATTTCTATTAAACCTTTATGACCTGCTGAAAA------AATAA------ACCCAGA--------ATTCCAGCCTCCATATCCTGAATTTCTCTCCTGTCCAACCATCCCTTCTCTATCCTCCTCATCACCCTCTGTCCAACAAAAGACCTACAGTTCCAG-AAAACCATGGTGGAGTGCAAGAAC--ACAGAACTAAAACAGAGCTTGAAACTTAAAGAAAGGGAGAGACTTGGGGGAGGAGTGGGGTGGAGTGACGTGATGTGCTGCTGGAAACCAGCAGTTGGTGGTTTCCTCTTGTGCTTCCTCTTCTGTGGGTTTTCTCCTGCTTGTGGGAGGGCCTTTTTCTCTCCTCCCGACAGAAAGGCTATCTTTGGTGTTCGTTCCCTTGAACTGTAACATCCTGTAAGG-----GTATGATTCCATGCCTCTGTGT-----------GGGTGTGAATTCCCTCAT-GGTGACCCTCAAAATCTGCACACAGGACCCCTTCCCATTGAGGGGAGGGGATCAAAACAACTCTACTTCTCAGGGTCCTCTCCTGTTCCAACTGGTCTGTGTCCA----------------------------------AGAGAAGCCTTAGGTAAATGGGGCCAGCTTGAAGATCAAACAGG-TTTGGCAGC-CTCTCCCGGCCTCTCTTTTCTCTCCTACAGCTTTATAGCTACAGCTGCCTTGAT-ATCAATATTGACTTTGGCTGGCTGGCATGACTACCCACAGGGTATCGTGCCTTAATTTACCAGGTGACAGGCAACGCTGCCCTCTCCTGGAACCATCCAGCAGAG---CCAGGGCTGTACCCCCAAATCCTGCAACAGAGGTTTCCCTCC---ATCTCACCTCCCTGTCCCTGCATTTCTCCTATCTCAGTAGCTCCTCTTTCCCTCTCTG---GGCTTCTCTTTCCACTCCCTCCCCTTCCTGGGCTTGGTAAACTAGTCCCTAATCTCTTCACACCCCAGATTGGAAGGTGGGTCCCTCCCTGACACTCCCCAGAGCTGTCACCAACCTCCTCCAAGTTTCTATAGCTCCATTGCTCAACAGATTTGCCAGGGGTAACCATTAACCCAGCCCTTAACTCTGTTCCCCCACCTTTCTTGCTGGAGGGGATTTTCCAATTACTGGTTAGCACAGCTAGGTCATCTCACCCCCACCATCTTTCCTAACTTCTTGGGTTGGGGGGCTGGGGAGGAATCTCCCCATCTCAGGGTACTAGGAACAAAGCTGGGGAGGATGGTGCATTTAAAGGGattatatatatatatatattttttttt--tttctttctccctcataacccca-----cccccgcaacacacacacacacacacaca-----cac s canFam2.chr12 4218988 1715 + 75515492 GGGATGGGAAGAGAGACCACCAGGCCTTCTGCTAGGGAAACA--------AGCCAAAGGGCCTCATCGCTGGGGGAGGTCTGCTCCTCCTCACTGGCCTCCTTAGCTTGAACACTTCCACGCTTGCCCCCATTCCAGGCCCCTTCCTGTGACCCTTGCCCTTTTCTCACTGATAGG-----TTGAAGATAGAATGGGGGGGGCGGGGGGAAACAGGGATATTGTAGCCCTA-------------GAATAGGAGCTGCACTGATCCTGGATGGGAA---TGGTAGCTAGTCCTTTCATGAAAGAAAAAAAGCAAAGATCAAACGGAATAATGTAAGTGGAGTCCCCGGAGGCAC--AGACACAGAAGTAGGGAGG-TAGAGGAAGAGTAGCT----------TGATTTTGGAGGTTCTGGCAACTCCTGATGATCTGCTGAAAATGGCTTAATGATATGTCCTCCAAACTGGACATATTCCAGCCTCCATATCTTGAATCTCTCTTCTACCCTACCATACCTTCTCTTCCTTCCTCACCA-CTGCTGTCTAACAAGAGATCTACAGCTCCAGAAAAAACATGGTGGAGTGCAAGGACGGAGAGGAGCAAAACAGGCTTTGACACGTAAAGGAAGG--GAGACCTGGGGCAGGACTTGGGTGGAGTGA-GAGACGTGCTGCTGGAAGCCAGCAGTTAGTGGTTTCCTTTCCTACTTCCTCTTCTGTGGGTTTTCTTCTCCCTGGGAGAAGGCCTATCTCTCTCCTCCCCAGAGAAGAGATATATT--GTATTTGTTCCCTTGAATAGTAAAGTCCTATAAGGTTGTAGAATGATTCCTTGAGTGTGTGTATGCATGGCGGGGGGGGGTTCTCCTCCATGGGTGACCCTCATTTTCTGCACACAGGACCCCTTGTC--TGAGGAAAGGAGGCCAAAGCAGCCCTA-TTCTTAGGGTCCTCTTCTGCTCTAGTTGATCGATGTCCATCAGAGAATCTGCCCCACATAGATCTCCCTTCTGGGAGATGCCTCAGACAAATGGGGCCAGCCCTGAGCTCAAACAGGTTTTGGCAGCTTTTTCTCTGCCGCT-TTTCCTCTCCTACAGCTTTATGGCTAGAGCTGGCTTGATCATCAATATTGACTTTGGCTGGCTGGCATGGCTACCCACAAGGTATTTTGCCTTAATTTCCCAGATGACAGATAATGCTGCCCTCTCTTGGTACTATCCAGCAGTGCCTCCTGGGCTGCACCCCCAAATCCTGCCTCAGAGAATTTTCTCTCTGGTCTCATCTCCTTATCCCTGCTTTTCTCCTATCTCAGTATCTACCCTTTCCTTCGAAGGATGGCTTCTTTTTTCACTCTCTCCCCTTCCTTGTCTTGGTAAACCAGTCCCTAATCTCTTTTCACCCCAGATTGGAAGGTGTGTCCCTCCCTGACACGCCTTAGAGTTGTGA-TGGTCTCTTCCAGGTTTCCATAGCTTCATTGCTCAACAG-TTTGCCAGGGGTAACCATTAACCTAGCCCTTAACTCC-CTCCCCTACTTTTCTTGCTAGAGGGGATTTTCCAATCATTGTTTAGAAGAGCCAGGTTA------CCCCACCATCTTCTCTAACCTCTTGGAT--------------GGGATCTACCCATTTCAGGGTACCTAAGGCAAAGCTAGAGAGGAAGATGCATTTTAAGGGATTTTTTTTTTTTTTTTAGTATATATTGATTTCTGTCCCCCTGACAATCTCCTTGCTTCTCCGCTCCTTACACACACTAAAAAATAAGCTTCAc a score=9601 s hg19.chr6_ssto_hap7 3037734 284 + 4928567 acacacacacagacgcacaaataagctttatggagcagtgacttcattatgttcaccgctttgagtccaacccctggcccaaaataggcactaaatagttgccgaatgcatgaatGATAGATACCTCTCTGTCTTCAGGGGTGTGTAGAAGT---------------GCGAAGGGGTATGGGCATGTCCCAGTAGGGGTGTGAGTGTTCTGATCAGAACTACTTCTCTCTGCCAGAATTTGATGTAATTCGAATGCTTCCACCTCTGCTTGAAGGGTTTAAATAATAAATTAGGCCCTG s canFam2.chr12 4222808 272 + 75515492 taaaaaataaaaaataaaaaataaGCTTCATGAAgtccataattaa--atgttcagtacttagattctgccacctggcccagagtaggcactaaatagttgctgggtgaatgaatgaCA------CCCCTGTCTTTAGGGGTGTGTGTGTGTATGTGTGCACCAGTGGAGAAGAGGTATAGACATGTCTCAGTGGGGGTGTAGGTGTTCTTATCAGGTCTACTTTTCTCCA-----------------TTGAATGCTTCTACCTCCTCTTGGGAGACCAAATCA--AAATTAGGCCCAG a score=6230 s hg19.chr6_ssto_hap7 3038094 267 + 4928567 TTTCCGCTTATTTATTTGaa-acaccgctcatttaggtcttactttgtttgccaggcactgttctaagctctgt-ataaatattaactcaGAGGGTACAAATATTAACTTAAGAGTTGTTG------------------------------------CAGGAAAAAAAATAA-GCGCCTCTGGCTCTTTAAGTTTGGCCTCCCCCTCAAAACCCCCGCAACGGTCCCAAACCCCTTCCAGGGACTGGGACTACGGACCCTGGTCCGACCTTCTCGCGGGCTTCCCACTGCGCCAATCAAATCCCAG s canFam2.chr12 4223314 277 + 75515492 NNTCTGCTTATTTATTTGaacacgtag------tagctcttac-cagtttaccaggtactgtcctaagctgttcaacaaatattaacttaGTGGGTGCAAATATTAATTT-AGAGCTGTTGGCACAGGTTTAATTGATGTAACTTATCTCCACTCTCCAGAAAAAAACGCAACTCCCCTCTGCCGC------TTTGGCCCGCCCCACACAACACC---------CCTACACCAGTTCCCTGTGCTCAAGCTCCG----CT--TCGGACTTTCTAGCGGGCTCTACGTCGTGTCAATCAAAGGCCAG a score=25258 s hg19.chr6_ssto_hap7 3038361 901 + 4928567 AAACAGTGAGTGCTAGAGGC---CCGGCTGCTAAG-------------------------------------------CAACGGCA--GAGGGCGGGAAGTTTGAACGTTCTGGACCCGCCCCGAAGGCAAATAGGCCAATCAGCGTCCAGACTCTTCAGCTACGGCAGTCCGCTTCTCCTCCTCGCCCTGTCGGATCTCTAGGCTGGATCCGGGCCTCTCCAATCAACAGCGGC-TAGGAGGGCGGGGCGCGTGCG------CGCGCACCTCGCTCACGCGCCGGCGCGCTCCTTTTGCAGGCTCGTGGCGGTCGGTCAGCGGGGCGTTCTCCCACCTGTAGCGACTCAGGTTACTGAAAAGGCGGGAAAACGCTGCGATGGCGGCAGCTGGGGGAGGAGGAAGATAAGCGCGTGA-GGCTGGGGTCCTG---GCGCGTGGTTGGCAGAGGCAGAGACATAAGACGTGCACGACTCGCCCCACAGGGCCCTCAGACCCCTTCCTTCCAAAGGGTA--ACCTCCGCGTGACAGGAATGAGGGTGGGGCGCGTGGAGTTTCCCACAATCTGTACTTTAGTT--AAATACCCGAG---AATTCACCTCCTGTGTCCACAGCTCTCCA---CGCCCCT--CAGCCCTGCCCCGCAGCCCTGTAG--------------------CAGAAGTACTTAGT-GCTTTGCATTCTGCGCGCCACCCTACCCCGGCCTCCTCTGTGAATCGTTGCTTCCGAACCGCCCTCACTTTTTGCATCCGCAGAGCCTCCAAGCTCATGGCCTCCTTAGGAGCGAACCCAAGGAGGACACCGCAGGGACCGAGACCTGGGGCGGCCTCCTCCGGCTTCCCCAGCCCGGCCCCAGTGCCGGGCCCCAGGGAGGCCgaggaggaggaagtcgaggaggaggaggagCTGGCCGAGGTCTCTGAGGGGA---GTAGAAACTTGAAT---------GGAGAGTTGAT---------GGGAAGTTAGAATAAA s canFam2.chr12 4224374 959 + 75515492 AAACTATATGTACTAAATAAATGTCAGTCACTGAGAAAGAAAGAAAAAAAAAAATCAAAGGCCAGAACCGGGGAAGGCCAGCGGCACCGGCGGCGGGAAGTTTGAACGTTCTGGCACCGCCCCATATGCGAACGGGCCAATCAGCGTCCCGCCACCCCAGCAA-------CCGCCGCTCTGCCCCG----GTTCCATCTCCAGGCAGAATCCGGATCCCTCGGGCCAATAGCGGCTTAGAGGGGCGGGGCGTGTGCGTGCGCACGCGCACCCCGCCCCCACGCGGAGACGCCCCTCTAGGCCGCGTAAGGCTGT-----GGTGACGAACTCTCGCTCCCGTAGCGACCCAGGTGACTGAAAACGCGGGAAAACGCCGCTA-GTCGGCCACGGCCGGGGTGGGAACGCCACTTGGTGAGGGCTGCGATCGTGGGTGTGTGTGGTTGGCAATGGCGGAGAGAGGAGCCGTGCAGGCCCCGCCCCG---------------TCCTCCAGCCAGAAGCAACCACCCCCACGTGGC-GGACGGGAGGCGGGGCGAGTGGAT----------TCAGTGATGTAGCTCGGAAGTCCCGGGTCAAAACCACCCGGCGTGTTAAAAACAAGCCGGCCCGGCCCTCGCAGCCGTGCGCCTCAGCCCAGAAGTTCTGGGCTCTGCCCGCGCCCAGAAGTCCTGAGTGGATTTGCGTCCC-TGCGCACCCCGACCTCGGCCTCCCC-----------GCCCCTGAACTGACTTCGTCTTCTGCACCCACAGAGCCTCCGAGGCCATGGCCTCCGTCCGAGCGACCCCAGGCAGGACGCCGCAGGGCCCGCGGCCCCAGGCAGCCTTGGCCACCTGTTCCAGCCCAGCCCCCGTGCAGGGCCACGGGGAGGCCgaggaggaggaggaggaggaggagcaggagCCAGCGGAGGTCTCAGGGCGGCCATGCGGGAGCTTGGATCCCAAGAGCGGGGCGCCGGTTTGACCGTCGGGATGCTGGAATAAA a score=1673 s hg19.chr6_ssto_hap7 3039578 67 + 4928567 AGGGTTGGGAAGAGCtgggcaagtctcttacctcctgagtggct--gtttcacattcactaaatggggg s canFam2.chr12 4225333 61 + 75515492 TGGGCTGGAAAGGGCT-AGCTAGTCGC-TGCCTCT------GCTCAGTTACACACTGACTGAATGGGGG a score=4338 s hg19.chr6_ssto_hap7 3056108 141 + 4928567 TCTCTTTCTCCCGACTCTGTACAAACTCCTTTGTTTTAGAGTTTGCACAACcctctatcaaagcacctaccacctcacttttaaatcttctgcatgtatttctgtcttccttcctagactgtgagcacatctgggacaggg s canFam2.chr12 4240244 121 + 75515492 tttttttctccttcctcaacatgaaattctct-------------------cctttattaaggcacctatcactttattttgaaatcctgtgggtttgtttct-tctccctcaacagactatgagctcatgtgggatgggg a score=71648 s hg19.chr6_ssto_hap7 3056563 1366 + 4928567 ccatatcttaattgtctttgtagtttcagtgtttggtacaGTGCCT-------------------------------CTCACTGTTTCTT-TTTGCCTTTGAGATCTTCCCTCTTTGTTACTGTGATCTTCCCTACTGGTCTTTGTTCTTCTGAGTCTGTCCCTATCACC--ACCTCAACCCGAGCTGGATGTGGCCTGTCCTCCTTTTTGTGTTTCTCTCACAGACTGTGTACAGTGCCCTGGGCCTGAGGGATGCCTGCCGCTCCCTGCCGCAGTCCATCCAGCTCTTTCGGGACATTGCCCAAGAGTTCTCTGATGACCTGCACCATATCGCCAGCCTCATTGGGAAAGTAGTGAGTAGAAGGAAAAAGGGAGTGCACCCAGGGAGGTCAGGGAGAGAGAATGCAGTG-----TGCAAGATG----------GGGAAACATGG----------------AAGATATTGAGG-TCAATTGGAT----AAAGAATGGGATGGTGGGAGGAGGCAGCAGAACTTCAGGGAAGTATCTGGAGGGTGAGAGTTAAAGGAGGA-CTGCAGGGAGAATTGGGGCCCAAGGAGAGCTGAGGAACAGGAC---AGAGGGTGCCAGGTCCTAAGAAACAGTACTT---ATCTCCTCAGGTGGACTTTGAGGGCAGCCTTGCTGAAAATCGCTTCACAGTCCTCCCCAACATAGATCCTGAAATTGATGAGAGTGAGTGTTGGGTGTG--GATGGGCCTGTGAGCCCTGCGCAGTGATGGAGTACCATCCTTGGCAGGTGGTCACCACAGCTGGGGATCTTCATAGCAACCAGGGCAGGAGACTCACTTTTGATAACCACGTGTCTTCCACCCTCGTAGAAAAGCGAAGACTGATGGGACTTCCCAGTTTCCTTACTGAGGTTGCCCGCAAGGAGCTGGAGAATCTGGACTCCCGTATTCCTTCATGCAGTGTCATCTACATCCCTCTGGTGAGGGCAGGAGAGTGGGTGTAGCCTTCAGATGTATTTTGGGGGAGATATTAGGCTTATGAAAGACATACTGGTAGATAAG-AAAACTTGTGGGGCAGCCTGAAGAACATGAACACTTTTTTGT---------------------------GGGGATACAGGGATCTTTTAAGCTCCCTCTAGGGTGGGGAGGTGTCCAGTAAGT--CTCCAAGCAGGAGAGTAGAGTATCTCCTCTTTACTCTCCCCAGATTGGCTTCCTTCTTTCTATTCCCCGCCTGCCTTCCATGGTAGAGGCCAGTGACTTTGAGATTAATGGACTGGACTTCATGGTAAGACCCTCAACCTCTGTAAGGTGAGTGATGAGGAAAATGAGTCAGCAGCTGAGGAAGAGCGTTACTCTACAGCAGCACTGCCCAATATGGGATCTCTCCTCTGTAGTTTTACTCTGAGCTTTACCAGCACTGAGACAAA-GGAAAGAGAAGTCAGAGTTA s canFam2.chr12 4240365 1432 + 75515492 ccacattctagtt--ctttgtggcctcactactgtgtggagtgcctgacacagagtTTTACAGATGCCATTTCCTTGCTTACTATTTCTTCTTTGCCCTTGAGACCTTGTGTCTTTCTTATTGT--TCTCCCCTGATGCTGTCTGTTCTCCTCAGTCCGTCCCTGTCCCCTCGCCTCAGCCCACCTT---------CTGTCCAC----------TTCTGCTGTAGACTGTGTATAGTGCCCTGGGCCTGAGGGATGCCTGCCGCTCCCTGCCCCAGTCTATCCAGCTCTTTCAGGACATCGCCCAAGAGTTCTCTGATGACTTGCACCATATTGCCAGCCTCATTGGGAAGGTGGTGAGTGGAAG-AAAGAGGCAGAGCCCCTGGGGACCCAGGGGAGGGAGGTGGGATTGGCAGATGGAGGAAGCCTGGGCTCTGGGGAACATGGCGAGAGCCATATCTGGGAGACGTTAAGGGTCACCTGGATGACCAAAGAATGGGATGGTGAGAGGAGGTGGCAGGATATCAGAGATGCATTTGGAGAGTTAGAGTTAAAGCAGGAGATGCAGGGAGAACAGGGGTGCAAGGAGAGGTGAGGGACTGGACTTCAGATGATTCTGGGCAATGAGCAACTGGATTTTTTATCTCCTCAGGTGGACTTTGAGGGCAGTCTTGCTGAAAATCACTTCACAGTCCTCCCCAACATAGATCCTGACATTGATGAGAGTGAGTGTTGGGTGTGCAGCTGGGCCTGTGAGCCC-----AGTGATTGGGGACCATCATCAGTAGGTGGCCACTACAACTGGGGATAACCATGGCCAACAGGGCAGGAACCTTGCTTTTGATACCCACATGTCTTTTACCCTCCTAGAAAAACGAAGGCTAATGGGACTTCCCAGTTTCCTCACTGAGGTGGCCCGGAAGGAGCTAGAGAATCTGGACTCCCGTATTCCTTCATGCAGTGTCATCTACATCCCTCTGGTGAGGGCAGAAATGTGGGCATAACCCCCATGGATCTTTTATGGGAGATATTAAGCTTATGAAGGACACACTGCTAGATAAGAAAAACTCCTAGAGAAGTCTGAAGAATATGAACACCCTATGATAGCTTTAGGCCCCTGAGGGAAGCCCTGGAGAATACAGGGATCTCT--GGCATCTTCCAAAGAGATAGGGTGCCCAGTACTTTACTCCC----------TGTCTTATCTCCTCTTCACTTTCCTCAGATTGGCTTCCTTCTCTCTATTCCCCGCCTGCCTTCCATGGCAGAGGCCAGTGACTTTGAGATTGAAGGACTGGACTTCATGGTAAGACCCTTGACCTCTGTAGTG-GAGTGCTAATAGAAATAAGTCCGCAGCTGAGAGAGGGCTGTATTCTAT--CAGCACTGCCCAATGAGGGATGTCTCTGCTATAGTTTTACTTTGATCTTTACCAGCTCTAAGATAAATGGGAAAAAAAGTCAGGGTGG a score=170068 s hg19.chr6_ssto_hap7 3057929 3442 + 4928567 GGGGCTGGAGGTGGGGTTAGAAAGATGGGGAAGGAGAGGAGGACCAAGAGATGCAAAGTCCACAGCTTTGAACCCCTGTACCCAGTTTCTCTCAGAGGAGAAGCTGCACTATCGTAGTGCCCGAACCAAGGAGCTGGATGCATTGCTGGGGGACCTGCACTGCGAGATCCGGGGTGAGGAAAAGCCAGAGGTTATATGCATTGTAAGATGTTTAAAAAAAGCAGCAGCCAGGGGAAGGAGGGGAGTGGGCAACTTGGGGATGCTTCCAACAGGCCCCTCCTCTTCCTGCTCTCTGTCTCGCTCACTCTGACTCT--ATCTTTTCCTCTGAATGTCTTGAGGT--CTCAGATTGTATCTGCAA-CCTGTTTCCAGATCCCCCTAGGGGC--CTCTGCCTCTCCTTCACTTTCCCCTGGAACTGACCTCCAGCTCCCTTCCT----CACCCACTCCCAGACCAGGAGACGCTGCTGATGTACCAGCTACAGTGCCAGGTGCTGGCACGAGCAGCTGTCTTAACCCGAGTATTGGACCTTGCCTCCCGCCTGGACGTCCTGCTGGCTCTTGCCAGTGCTGCCCGGGACTATGGCTACTCAAGGCCGCGTTACTCCCCACAAGTCCTTGGGGTACGAATCCAGAATGGCAGGTAAGAATAGAGGCGGGTGGAGGAATAGACATGAGGGGCCCAAAGGCTACATCTTCTGGGGG-TTCATCTATCTTGATCCACAAGCCATGCG--AGGTGCCTCTCCGCCCACTGCAGACATCCTCTGATGGAACTCTGTGCCCGAACCTTTGTGCCCAACTCCACAGAATGTGGTGGGGACAAAGGGAGGGTCAAAGTCATCACTGGACCCAACTCATCAGGGAAGAGCATATACCTCAAACAGGTGAGGAGAAGCCCTGCAGCCTGGGCCTCTGGCGTCTCCTGCATCTACTCCACC-CCTACTTGCCAGCCAACTCAGGCTCCTGCAGCTCTTCTCCCATTTTCTGACCCCGCTCTTCATGAAAGGACCATCACCCACATCCCTGTGCTTCCACCTCACATGTTCTTATTCTCCACT----GGAGAGCCATGCTCTAATGGAACTTTCCGTGGCCCAAATTCCTTCACCTGCCTCTGAGTAGGTACACACCACTCCCAAGTATGTCTCTGCCCACGTCCCGTGCCTCTTCACTGATTCTAAATTAGCCCACAGGGCTATGGTCAGGATTCGGGGAGGAGAGACAGAGTCAGTGTGTCTGTTACCTATTTCTCCTGTTTCACCCTGTCCATTTCTCTTTGATGTGCCATTCATGCCTTGA----GCCTCACTTTCACCTCAGCCCACGGCACCAGGCCCCAGGCCCTGTCTCCTTCCCTATTCAGGTAGGCTTGATCACATTCATGGCCCTGGTAGGCAGCTTTGTGCCAGCAGAGGAGGCCGAAATTGGGGCAGTAGACGCCATCTTCACACGAATTCATAGCTGCGAATCCATCTCCCTTGGCCTCTCCACCTTCATGATCGACCTCAACCAGGTCAAAGGGAACAAAGGGAGGTGGGATTGAGGAAGGG-GATAATGGGAAAGGAAC-----CCCTGAAAA-TGCTCATAACAGGAAAGCATGCCCTCTGCTGCATGCCCTTTATACTAAAAGTGGGGAGCACTAAGGTCAGAGATAAGAAGAatcaataccataaacatttcttgaacccttgtttcatgtgagtcactgttggcaaaga--ggatgaacaaagcgtgcacctcaccattcaagaacttgcagtgcagtagggagggcatgtatacagc---tttattcacaggccaactgtggtcagtgcGTT----ACGGGCTTCCAATACTA-----ACTTTCCCTTGTCCACCTTATACCCAGCAGGTGGCGAAAGCAGTGAACAATGCCACTGCACAGTCGCTGGTCCTTATTGATGAATTTGGAAAGGGAACCAACACGGTGAGGGGAGAAACTGATGAGGGGAGAAACTAAGGAGGGGAAAATGGAGGAGGATGAAGGAGCATGACAGTGAGGCTGGGCCTCTGGAATGGAATAGGGCTGTGTGGGCAGAAAAGAAATAGAACA---CGAGACAGGGAAAGGCAGTGCAAGTGCAGAGGGGCATATGGGG-TCCCCATGGCTCCGAATGCTAACCTCTGCCCTCTTTGCAGGTGGATGGGCTCGCGCTTCTGGCCGCTGTGCTCCGACACTGGCTGGCACGTGGACCCACATGCCCCCACATCTTTGTGGCCACCAACTTTCTGAGCCTTGTTCAGCTACAACTGCTGCCACAAGGGCCCCTGGTGCAGTATTTGGTGAGGAGACCAATCTAGCTCCTCGGGGACCCCCAGGCTGGGCATTTCCCAGAGGTGGGGATTGGCTCCTCTATCAGAACAAGGGCTCCCTCAGCACAGAGACCACATCCCTTCCCTTTTCTCCCTCCCCACAGG-ATTGGCCAAGGGTTTCAGGACAGGAAGGAG-GTGATTGATGATACACTGTCT--TTTATTCTCTTTTAAGACCATGGAGACCTGTGAGGATGGCAACGATCTTGTCTTCTTCTATCAGGTTTGCGAAGGTGTTGCGAAGGCCAGCCATGCCTCCCACACAGCTGCCCAGGCTGGGCTTCCTGACAAGCTTGTGGCTCGTGGCAAGGAGGTGATGAGATCCAAATGTGCAACCACCTCCACATCAGAGCTCCCTTTCATT---CCTAGTCCTACT--GGGCCTGGGT--CTAGGTCCACAGGATTTCTGACCCTTATTTCCCCTTCTCTTCCCCACTCCCCTTACTCCTCCCACCTTCTTGCTTGTTCCTAGGTCTCAGACTTGATCCGCAGTGGAAAACCCATCAAGCCTGTCAAGGATTTGCTAAAGAAGAACCAAATGGAAAAGTGCGTATATGGCCCCAGTGTCTTTACCCTCTCTGCATCTTCTCCTGCAACTCTTCTCCCCTTTTCAGGGACTCAGCCTTCCTCCAGCACTTTGCCCTTCAGAAACCCACCATTTCTTTCTGAAATCCCTAAATCTTCAAGATCCCAGGTTTTCTGTGCCACAGCCTCTCCCCT-CTGCCCAGGGATTTGGTTGTCCATTCTGCCATAAAT----CTTGCGATTTTCTCTCTTCTTCAGTTGCCAGACATTAGTGGATAAGTTTATGAAACTGGATTTGGAAGATCCTAACCTGGACTTGAACGTTTTCATGAGCCAGGAAGTGCTGCCTGCTGCCACCAGCATCCTCTGAGAGTCCTTCCAGTGTCCTCCCCAGCCTCCTGAGACTCCGGTGGGCTGCCATGCCCTCT--TTGTTTCCTTATCTCCCTCAGACGCAGAGTTTTTAGTTTCTCTAGAAATTTTGTTTCATATTAGGAATAAAGTTTATTTTGAAGAAAGATATTGTTTCTTTAGTCT--------CAAAACAAGAGACTAGGAAAGATCCAAAACACAGAGCAGGAGTCCACA----GGGGAACCTGCCCTGCCTCAGTAAAAATACAGTGTTGT s canFam2.chr12 4243182 3288 + 75515492 GGGGCTGAAGGGGGTGTTAGA-----GGAGATGGAGATGAAG-------GATGCAAAGCCCAC----TTGAGCTCTTGTTTCCAGTTTCTGTCAGAGGGGAAGCTGCACTATCGTAGTGCTCGAACCAAGGAGCTGGACGCACTGCTGGGGGACCTGCACTGTGACATCCGGGGTGAGGAGAAGC-------------------AAAGTCTT-------------------------GAGGGGAGTGACCAGCTCAGAGG--------------CTCATTTCTTCCTGCTCTTT--------CACTTGGGCTCTGCACCTTTTCCTCTGAATGTCTCGGGGTGACTCAG----TATCTGCAAGCCTCTTTCCAGGGCTCTCTGCTGGCTTCTCTGCCTCTTCTTCATTTTCCCCTGGAGCTGATGCCTGGCTCCCTCCCCGCCCCCACCACCCCTAGACCAGGAGACCCTGCTGATGCACCAGCTGCAGTGTCAGGTGCTGGCACGGGCTGCTGTCTTCACCCGGGTGTTGGACCTGGCCTCCCGCCTGGACGTCCTGCTGGCTCTTGCCAGTGCTGCCCGCGACTATGGCTACTCAAGACCTCGTTACTCACCCCAACTCCTCGGGGTCCGGATCCAGAATGGCAGGTAAAAGCAGCAGGGGGTGGAAGCAGGGGCACATGGAGCCCAAAGGCCCTATCTTCCGGTGGCTTGGTTCATCTAGATCCACAGGCCATGTGTGAGGGAACTTTCTACCCACTGCAGACATCCTCTGATGGAACTCTGTGCCCGAACCTTCGTGCCCAACTCTGCAGAATGTGGTGGGGACAGAGGGAGAGTCAAAGTCATCACTGGACCCAACTCCTCAGGGAAGAGCATATACCTCAAACAGGTGAGGAGAATCCCGGCACACTAGGCCTCTGGCATCTTCTGCATTGTCTCCATCTCCCACTGGCCTGCAGACACAGGTTCCTGCAACTCCTCCCTGGTGTTCCAACCCGACCCGTCATGGAAAGACGATGGTGCACACCCCC-TGCT----CCTCACATGTCCTCATCCTTTACCTGAGGGAGAGTCGTGCTCTAACGGGTCTCTCTGTGGCCTGAAAGCCTCTCCTCACCTCTCGATAAGTCCATGCTGTCCCCAAGTGTGCCTCTGCCCACGCCCCCACCCTCTCGCCTGATTCTAAA---------------------GAGAGCTGAGGGGG-------------------------CCATCCTCTTCTGTTAAGTGGTGTCCATCCCTCCTTGATCTGTAATTCACCCCTCAGCCTCGCCTCACCTTCACCATGGCCCATACCACCAGGTGCCAGACCCTGTCTCCT-CCATATTTAGGTAGGCTTGATCACATTCATGGCCCTGGTGGGCAGCTTTGTGCCAGCAGAGGAAGCCGAAATTGGAGCTGTAGATGCCATCTTCACGCGAATCCATAGCTGTGAATCCATCTCACTGGGCCTCTCCACCTTCATGATCGACCTCAACCAGGTCAAAGGGAGCAAAGGGGGGTGGGACTGGGGGAGGGTGTTAACGAGGAAGGAACTCTATCCTTGAAAAACGATCAGAACCAAAAAACATTCCCTCTGCTGCATGCT-TCTCCATTAGGGGCAGGGAGCACCGAGTTCAGAGACTGGGAGAATCAATACCAGAAAACTTTACTGAACCTTTGCTCTGCATGAGGCATTGTTGGCAAAGAAGGGATGCACAAAACGAGT--CTCGCCAGTCCAGAC--------------GGGTGGACACACATACAGCGGCTTCCCTCACAGGCAGACTGTGGTCAGCGGGTTCCTTACAGGCCTTGAGTACTACTGAAACTCTCCCTT-TCCACCCGCTGCCCAGCAGGTAGCGAAGGCAGTAAACAATGCCACCAAGCAGTCCCTGGTCCTCATTGATGAATTTGGAAAGGGAACTAACACGGTGAGGAGACAAACTGA-----GGAGAAGCCAAGGAG----------AGGAGGACAAAGGGGCGTGAGGGTGACGCTGGGCCACAGGAGAGGAGTGGGCGTGTGTGGGCAGAAAAGAAACAGAGAAGTGCAAGATGGGGTCGGCTAGGGCAGGTGGACAGGTGAACACGGGGGTGCCTGTGCTTCAGTACCCTGATGCCTGCCCTGTGCGCAGGTGGACGGGTTGGCACTCCTAGCTGCCGTGCTTCGACACTGGCTGGCACTTGGACCCACGTGCCCCCACATCTTTGTGGCCACCAACTTTCTGAGCCTTGTTCAGCTCCAGCTGCTGCCACAGGGACCCCTTGTGCAATATTTGGTAAGGATACCTATCCAGCTCTCTAGGGATCCCTCAGAGGAGCAGTTGCCAGAATCCAAAACAGACTCCTCCATTAGAACGGGGGTGCCCGGAGCACA-ATACTGCATCCTTCCTCT---CTCGCTCTCCACAGGGATTGGCCAAGGGTTTCAGGGCCAGATGCAGAGTGATTGATGATACTCTGTCCCCTTCTGTCTCTTTTAAGACCATGGAGACCTGTGAGGATGGGGACGACCTCGTTTTCTTCTATCAGGTGTGTGACGGTTTGGCCAAGGCCAGCCATGCCTCCCACACAGCTGCCCAGGCTGGACTTCCTGACCAACTCCTTACTCGTGGCAAGGAGGTGA---GATCCAGAGGTCAAACCCTC----CATCAGGGCTCCCTACTATTGTCCCTGCTCCTCTCAGGGGCCTGGGTTTCTGGGTCCATGGGACTTCTGATCCTTATTTCTGGTTCTCTTACCCACCTTCCCCACCCCCACCCCCTTCTTA----TCACTAGGTCTCAGATTTGATCCGCAGTGGGAAACCCATCAAGCCTGTCAAGGAGTTGCTAAAGGAGAAGCAAATGGAAAAGTGAGTGTGTGGCCC-AGTGTCTTGGTTCTTTC--CAGAATGTTCTGCAGCTCTTCTCCCCTTT-CAGGACCCCAGACAGCCTC------TTTGCCCTTCAAACACCCATGATTTGTTCCCAAAATCCCTAAATTGTC-------CTGGGGCCCTGGGCCGCAGCCTCTCTCCTACTGCCTGGGGACTCAGTTTTCTATTCTGCCATAAATAAATCCCACTGTCCTCTTTCC-CATCAGTTGCCAGATGTTAGTGGATAAATTTCTGAAGCTGGATTTGGAAGATCCCAACTTGGACCTGGACCTTTTCATGAGTCAGGAAGTGCTGCCTGCTGGTACTGCCATCCTCTGAGACCCCTTCCTTGGCCCT-------------------------GCTGC-ATACACTCTAGCTGTTTCCTCATCTCCCTCGGACCCACAGTTCT--GTTTTCCTGGAAATTTTGTTCCATGTTGGGAATAAAGTTGACTTCAGAGAATGTTATTGTTTCTTTAACCCAGCTAATACAAAACAAAAGAAGAGAAATGAGATGAAACATCAAGCAGCAGTCTGCATCCAGAGGGTCCTGCCCTGCCTCATTAAAAATACAGGGACAT a score=106151 s hg19.chr6_ssto_hap7 3061371 2051 + 4928567 TGCTGTAGGAAGACTCCCGGATTCTACCCCAGGATACTTCATGAGAACGAACCCC-----TTCAGAGAGGCCCTACAAAA-CAGATTAGAGGGAAGACAGAGGGGTCCAAGGGAGATGGTCTCTCTTCTCAAGTAGGAACACCCCAGCCTCAGACAGACACAGCAGGAAGGGGCCTGAGAGGCTGACAGA---GGCAGGATGGGTGCAAGGCAGGGGTGGAGGGGAGGGACCAGCCCGGGCTGCACCAGTGGGAGTGGCTCCACCCTTCCCACCTCAGAGCCATGGGGAGCCAGGGCTCTGGCGGGGTGCCCTTGGTGCAGGCTCCCTACACAGTCCTGCTGCTGCCGCTGGGGACAAGCCGCCAAGACCCAGGGGCCCAGAGCTTCTTCCTTTGGGTGAGTATCAGCCCAACAAGAGGTCCCAGGGGAACTCTCTCAATAGATCTGCCCTTTATATTTCCATTCAACTTGAGGGCCCACAGTGTTCCCGCCTGCCTCCCCTTGCCCTCCAGGTCCTCAGTGGCCAGTCTGGGTTCACACTCAGTGACCACACAGTGAACCCAACTAGGGGTGGAGAGAAAGGGCCATAACCCAGAGCCCTACTGTGGCGTGAGAGTCAGCCTCTGTGATTGCCTTTCCCAGCTACGCAGGATGCAGGCTCTGGAGAGAGAACAGGATGCCCTGTGGCAGGGTCTGGAGCTGCTACAGCATGGCCAGGCCTGGTTTGAAGACCATCTGAGGGAGGCACAGCGACAGCAGCTGCATCTAGGGGCCCTTGGTGAGGTATGGGGGCTGCCCCTCTGTGTGAATGGGGGGAGGACCAGGGAGGGAGGAACAGGGAATGTGTAGACACAGCCTGAGACCACTCTGGAGAGGGGAGAGTTAATGGTCAGGGATCATGAGTTGGAGGCAGCATCGTAATGACAGGATGCCACCAAGTGTTAAGTTGGTGTTCATTGTTGGGGCTGGAGGAAGCTGGTCTGCATTCCATTCAGAGGGA-----TTTGGATCACTCCATGGAGATGAGGGTGTGGCCTGGATTATTCCAATGGGGCAGGGATGGACAGGGAGGCTCCATGAAGAGTAGTGAAAGGGGGTATTGTGCTATTTGAGGGAGATGGAGGAACTGATGTGCTAAAGAGATGGAGGTGGAGAGTACTGGATTTT-CCCACCTGCCTGGGAGGGTACTGGGACGAGGGGATCCAGATG----AGAGGGATGGCCTGTGGTGACAGGAATAGAGTGGCAGACG-ACCTCAGGTTTTCACCATGTTGTCAGCCTCCAACTCCTCCTCTAGAATTTTCTAACAGATTTACACTCAGAGCCTGGTCGCCCCCCGTTAGCCCAGATTCAAAAGGTGAACATCTGTTTGCAGAATCTGATTCATGAGAAGGTGAGTTTATTGTTTTCAGTTTAGACTTTTGGGAAGTTGGACTAGAGAGGGGAGTTGTTGGGGTCAGTGCTGGCTTAACAGAAAACACAGCGAATT-----------TCCCCTCCAGTTCTCCCCAAGTCCACTGAACAAGGCTAGTTCCTGCACCACCCAGGATTCAAAGGAAAGACGAAGGGAGCAGAACTTGTGGCAGCAACAGGTAAACTTCAAGA------AGGAGGGCAGGAGCCCCACCCTACAGGGCTGGGAGGAGCCCAGAGGCCCCATCTGTTTCTC-------CTCCAGGAGTTGTCAAGGCAGCAGAAAGGAGTCACCCAGCCAAAGGAGGAGATGGCTCAGCGGGGCTGCACCAAGGGGCCAAGAGGCCCTACCCGTGTCTAAACCCTCCTCTCACTCCCCTAAGCCTGGTGAAA----------------------GAGTCAGAAGCCCCAGGCTCCTTTTTCTGTTTCTTAACTCAACAGCTAAAAAATGGCTCCAGGTAGTGAGTCAA-TGAAGTTCAGACATGTTGGTGTAAAGTTTCTCCTCTGCTCCTGAAAACTTCATCTTCTTGGTGTCTCATGTCC--------TCATTCTCCCCTATATG-----ACATGCAAAAACGATCTTTCTTTGAAATCCCTCT---GGGAAGAAGCATGTTTATTGAAACTGTCCTTCAGCCTTAAATACAAAAATAAAACTGAAACTGCTCCAGAA s canFam2.chr12 4247012 2058 + 75515492 TGCTGTAGGGAGACCCTTGGGTTCCACCCAGGGGGACTTCATGAGAACCAGCCACAGCTGTTTTAACAGACCCTACAAAAGCAGATGAGAAGGAAGAGATTACGCCCCAACAGAGATGATCTTTCCCCTTAAGTAGGAACACCCCAGCCTCAGACA----TGGCAGGAAAGGCTCTGAGAGGCTGAAAAACAAGGTAGGATGGGCACA-----GGAGGGAAGGGGAGGGCCCAGCCCTGCATGC--CACTGGGCGTGGCTCCACTCTTCCCACTCCAGAGCCATGGGGAGCCAGGGTCCCAATGGGCTGCCCCTCGTCTGTGCTCCCTACACAGTTATGCTGCTACCACTCAGGACAAGCCGCCAGGACCCAGGGGCCCGGAGCTTCTTCCTCTGGGTGAGTATTAGTCCAGCAAGAGGCCCCAGAGAAACCCACTGCCTAGATCTGTCC-----ATTTCCAGCCAATTTTGAGGGCCCCTGTCTTCCCCCCTGCTTCCCCTTGCCTTCCAGGTGCTCAGTGGTTAGTCTGGGCTCACACTCAGTGACCA----GTGAACCCAACCAAGAGTTGAGAGGAAGTGCCACGGCCCAGAGCCCTGCTGTGGAGCAAG--TCAGCCTCTGCTTCTTGCCTTCCCAGCTGCAGAGGATGCAGGCTCTGGAGAGGGAGCAGGATGCCCTGTGGCAGGGGCTGGAGCTGCTGGAGCATGGCCAGGCCTGGTTTGAGGGCCGTTTGAGGGAGGCACAGCAACAGCAGCTGCATCTAGGGGCTCTTGGTGAGGTACGGGG------CTGATGTGCGGTGTGGGGGAG---CAGGGAGA---------------TGCAGACACGGCA-GACACCACCATGGGAAGGCAAGAGTTAATGGGCAGGGATCATGAATTGGA---AGCACTGTAATGACTGGATGCCACCAAGTATTAGGTTGGTGTTCATTGTCGGGATTGGAGGAGGCTGGTCTGCATTCCATTCAGAGGGACATGGTTAGGATCACTCCATTGAGATGGGGGAGTGGCCTGGATCATTCCAATGGATCAGGACTAGACAGGGAGGATCCATAAAAAATAAGGAAAAGGG-TACTGTGCTGTTTGAGGGGGATGGAGGAACTGGATTGTTAA-GAGATGGGAGTGGAGAGTGGGGGATTTTTCCCACCTGCCTTGAGGGCTACTGAGATAAGGGAATCCCGATGGAGAAGAAATATGACCTGTGGTGTCAGAA---GAGTAGCAGATGGACCTCAAGTTTTCACCATGTTGTCAGCCTCCAACTCCTCCTTTAGAATTTCCTAGCAGATTTACATTCAGAGCCTCATGGCCCCCAGTTAGCCCAGATTCAAAAGATGACCATGTGTTTGCGGAGTCTGGTTCAGGAGAAGGTGAGTTTATTGTTTTT-GCTTAGATTTTTGGGAAGTGGGGGTAGAGAGGGGACCTA---GGATCAACACTGGTTTAAGAGGAAAAA--GTAAATCCCACCCACCCCTCCCTCCCAGTTCTCCTCACATCCCTTAAATAAGGCTGATTTCCATGCTGCCCAGGGCTGGAAGGGAAGGCCAAGGAAGCAGAACCTCTGGCAGCAACAGGTAGGCTGTAGGGGGTGGCAGGAGGGC-GGAGCCTGGCCCCCTAGTGGAGCGGGGAGCACAGATGCCCA--CGGTTTCTCTCCTCTTCTCCAGGAGCTGTCCAGGCAGAAGGCAGG---CATTCAGCCAAAAGGGGAGACCGTCCAGCTTGGCTGCCCCAAGATGCGGGGGGGCCCAACCCGTGTCTAAAGGTTCCTCTGGGTTTCCTCA-TTTGGTGAGGTGGTGGTGGTGGTGGGAGGCCTGGGCCCGAGCCCCCAGTCTCCTTATTCTGCCTCTTGACCTAACAGATAAA---TGGCTCCAGGTGATGGGCCAACTGAAGTCCAAACATCTTGGTATAAAATTTCTTCTCAGCAACTGAAAACTTCCATTTC---ATCTTTCCTCTCCCTGATAGGTTGATCTCCCTGATATGTCCCCATATCCATAAATGATCTCTCTTTGGAATCTCTCTCTAGGGCAGA--TATGTTTACTGAAACTGTCCTTCAAATTTAAATACAAAAATAAAATAGGAGCTTCTTCAGAA a score=4609 s hg19.chr6_ssto_hap7 3063422 94 + 4928567 AGCAGCTTTCTCCAAAAATG--TCTTTGGTTTGTTTCTCAT-AGGGTTAGGAAAAGTGCATTGTGGGAATATCCATTGCCCTCTATCCCAGTCTTGC s canFam2.chr12 4249408 97 + 75515492 ACCAACTTTCTCCAAAAAGGAGTGTTTGCTTTGGTTCCCACCAGAGTTAGAGAAAGTGTACTATGGGAGAATCCATGGCTCTCTATCTCAATCTCAC a score=1839 s hg19.chr6_ssto_hap7 3063703 41 + 4928567 TAAGAAAGGAAAGGG-ATGTGATGGAGAAAGAAAACCTTCAT s canFam2.chr12 4249505 42 + 75515492 TAAGGAAGAGAGGGACAAGTGCATGAGAAGGAAAACCTTCAT a score=112704 s hg19.chr6_ssto_hap7 3064067 2361 + 4928567 CCCAGCTAGGAGAGGTAAGGTCCTAAGACCTATGTGACAAATGTGTCCCAGGTCTTCTTACCAATGGGGCAGG-TTGAAAATAGTGCTGGAGACCCATCCCTTTAGAGCCCGTTGTGTCACCAGGAGGCCAGGCCTAGCAGAAGCAGCACCCCTCCAACTGTGCCCCACCAGGGGCTGCCCGCAGCCAGCCCTGCCCCAGCCCTGCCTTGAGTCACCAATGTGAAGGGGGAAAAGGCAGGGGTGGCCGTGGTGAGGATCGGGTCAGATGAGCCGGTAGGGGTGGTGTGCCGGTCCTGTGGGGAAAAGGA-AGAGAATGACAGGGTGTGCTAGAGCTGTACTCAAATTAAACCTACACCACCCTCCCCG-GCCTTGCCCACCCTGTGATGGAAAGTAGTGGTTCCTCACCTGCGGGGCTGGGGCCGATACCAGGAGCCGGAGGAAAGCATGAGTCGGGGGTACTGGGTTGGCTTCTCGTCCCCCTGCAGTCACAGTCACCATCACCACGGAATCCGGGGCCGCTGAATCTGGGACCTCCAGCCACAGGCGGCCCCAGGCCGACTCATTCAGTTCCAGGTGAGCCCTGGAGAGAGGATATAGGCGTCGCTAAAGCTCCAGGCTGCCCAGAGCCTAGAGTCGGGACGCCTGCAGGGGCACGGGAGCGGAGAGGAGGATTCTGAGGGCCAGTCGGAGGGGGACAGG--GGCAGGGCTTGGGATAAGCATTGGCC--------------GGGCAAGATG--CCAGAGGG-------------AGCTGGAGGGTTCATGAGCCTCACCTGGAGAGGTTGGAGGTGAGGGAGAAGCTGGGGTTGACGAAAGTCCTAAGGTCAAGATCCTGAGGGCCCGAGAAGCTGGCGATGCGGAGACTGAGCGGGACTTTGCTGCCCGGGGCCAAGAAACCCGAGGGGCCACTAAGCTGCAGAGAAGGGTTCTTCAGGGAAGGGGCCGCTCTAACTCTCTCCAGCCCCAGCCGCACTTTCCCCTGGCGTCTCACCTCCAGAAGGACAGGGACTACAGTGCTAGGCTGAGGGGCAGCCCTGTGCAGGCGCCGCCCCGCTGCGTCCTGGCCAATCAGCTCCAGGGAGAAGGGTCTAGGGGTGGACAGCAGCGTGGGCGACAGCGAGGCTGCGAGGAGACCTCGCTCCGGAGGTCCCACGGGCTCCAAGGGCACCTGGCCTAGTTCGGCACCCTCTGGGACCCCTCGAAGGATGACGTGGGAGAAATGCGGCTGAGGATCCCCAGGATTGGCTCTGGAACCCAACCCTGTCACTTCTACCAGCAGCTGGGTCTGAAGACCTGGGACAGGGGCGAGGAGGGGAGAACATTGT-------GAGATTCGGAGACACAGGGAGAAAAGAATTAATGGCCTtcaaaataggggttccctctggggagtatggatgggaaaatag-gttaccttcgaggggtattgatggggagcatcaggagggagttctggggtgctggaaatgttctatatcctgaactg-------------------ggtgtattatatgaaatccatcaaactgtacactttagtg---cacat-----tatgtaaattataactcaatataaaagttatGCATATGCACAGatgtatgtatacatatatacattatatatataatatatatattatatattatatattttatatatatatataAAACTGGGGGTTAGGTGGGTGGGGGCTCAGGGAATAAATGTACCTGCAACTGGCTGAGTCAGGGGGTAGAGGCCAGGGTGGGGTCCATCCTCCATGGGGATCCCAAAGTGGAAGAGGAAGTCCAGGGAGGTCTGGGCTGGGAAAGGGCAAAGGCAGTCAGAGCCCTTCCTGAAAGGAATGTGACTGATCGTGTTCTCTGAGGCCTGCAGTCTCTGCTTCCCCTTCCCAGGAACACCTCCCTCCTTACCTTGCACTCTCACCCCAGGGGTGTCCTCAGCTGTGACCTGGATCTCCCAGGTTCCTGTCTGTGGAGGGTCATCCATGGTCACCATCCAGAACTGCCCAAAGCGGCGAGTGTGACCTAGAGGACCCCCGCCTTCCTCCTGGCCCTGGGAGACCCCTGGGGTCAG-GGAAGAG----ATTGTCACATGAAGCACTTGCTCTCCTTGAGTACATCCCCTCGATTGTCTATTCCCCGGTCCCCTCTCTTCCCTCTACCTTCAG------------AGGTACCTGCAGGGTTCTTGATCCAGAAGCTGCTGATGTCTCCGTGGATCCGGACTGTGATCTTCTGGAGCAGCCCATCCACGCTGAACACAAGTGGCTGCCCAGGCACCACAACAGGAGGGTCCAGGGGAAGAGTCACCTTGAGGGATTGGCAGGACCAGAAAATGGGGAAGAAGATGAGGTATGGGATGAGGAACAAAGAAGAAAGGGGAGATAGAAAGAA s canFam2.chr12 4249547 2304 + 75515492 CCCATCTGGGAGAGGTGGGGGCCAGAGGCCCATGTCAC---------------CTTCTCAGCAATGGGATAAGATTGAAAATAGCACTGGAGACCCGTTCCTCTAGGGGTTGTAGTGTTACCAGGAGGCCAAGCCTAGCAGGAGCAGTACTCCTCCAACTGTGCCCCACCAGCAGTTGCCTAT---CCGCCCTCCTGCAGCCCTTCCCCGAGTCACCAAAGTGGACA---------CAGAGCTGGTCGAGTGGAGGATGGGGCCAGATGAGTGGGCAGTGGCAGCCAGTGGGTCCTGGGGAGAAGGGGAGAGAGGTTGTCAGGCTGT-------CTCTACCCAAATTAAGCCCACAACACCCTCCCCTTACCCTGCCTGGCCTGCAATGGGAAGTGGGGGTACCTCACCTGCGGGGCCGGAGCCAGCACCAGAAGCCAGAGGAAGGCATGGGTCGGGGGCACTAGGCTGCCTTCTCGACCTGTCGCAGTCACAGTCACCATTACCACGGAGTCTGGGGCGGCTGAGTCCGGGACCTCCAACCACAGGTGGCCCCACACAGACTCATTCGGTTCCAGGCGAACCCTGTTGAGTGGACACACAGTGGGCTGAAGGCCCAGGCTCTGAAGAGCTGAGAGCC----------CAGGGTCTCAGGCCAGGTGAGAA----TCTGAATGCCCCTGGGAGGAGGCCGTGTAGGTGGGGCTTA----AAGCACCAGGCCACCATGTGAGGGGGAGCGGGAGGGACCAAAAGGTGGGCCAGAACTGAGCAGGAGGGTTCGGGGGTTGTACCTGGAGAGGTTGAAGGTGAGAGGGAACCTGGGGTTGACAGATGTCCTAAGGTCCAGATCCTGAGGGCCTGAGAAGCTGGCAATATGGAGGCTAAGTGGGGCCTTGCTGCCGGGGGCCAGGGACCCTGGGGAGCTGCTGAGCTGCAGAGGAGGGCGGGTTAGGGGAGAG-CTGCTGCAGCTCCCTCTGGCCCCACCCGCACCTTCCTCTGGCATCTCACCTCCAGAAGGACTGGGACCACGGTGCAGGGCTGGGGGGCCACTCGGTGCAGGCCATGCCCCTCTCCATCCTGGCCGATCAACTCCAGAGAGAAGGGGCCCGTGGTGGACAGAAGTGCGGGTGGCAGTGAGGCGGCCAGGAGACCTCGCTCCCGTGGTCCCATGGGTTCCAGGGGCACCCGGCCCCGCTCAGCCCCTTCTGGAATCCCTCGAAGGACGACATGGGAGAAATGCGACCGAAGATCTCTGGGGTCACCTCTGAAACCCAGCCCTGTCACCTCTACCAGCAGCTGGGTCTGGAGGCCTGGGACAGGGGGTGGGAGGGGAGGATGATGGTCCACAGGAGATTC--AGACATGGGGAGAAAAGGATGAATGGTTTTGGAAACAGGGGTTACCCCTGGG-AGTATGGATGGAGAAAGGGTgctacctctgagtgacattgttgggcagggtgaagacaga-ttctgggatgcctgaaatgttctaaatcttgaactgagagaggaatggttacatgggtgcattat--gaaatcca----gctgtttacttcagttagttacttctgtatatgtaagccgtaactcaata-aaaaGTTA--------------------------------------------AATACAGA---------------ATTTCATAGCTAAATA---GATGGGATAATGGGAAAGTAGGGG-TGGGGGGACAGATGTACCTGCTACTGGCTGAGCCAGGGGGTAGAGGCCAGGGTGGGGGCCTTCATCCATGGGAATTCCAAAGTAGAAGAGGAAGTCCAGGGCTGTCTGGGCTGAGGA-GGGCCAAGGCAATCAGAGACCTTGCCAAAACAAATGTCACTGACAGTGCTCTCTGAGCTCTGCAGCCT-TGTCCTCCCTTCCCAGGAATATCTCCCTCCTTACCTTGCACCCTAACCCGGGGCATGCCCTCCGCTATGACCTGGATCTCCCAGGTCCCTGGCTGTGGGGGGTCATTCATGGTAACTATCCAGAACTGCCCAAAGCGGCGCGTGTGACCTAGAGGCCCTTCGCCTTCCTCCTGGCCCTGGGAGACTCCTGATGGCAGTGGGAGAGCAAGATTGGCACATGAGATGATTCCTGTCCCTTAGTA-------------GTTCACCCTTCACTCTCCATCCTTCCCACTGCCTCAAGTCACACTCGTGGGTGTACCTGCTGGGCTCCTGATCCAGAAGCTGCTGACCTCCCCATGGATCCGAACTGTGACCCTCTGGAGCAGCGCATCCACACTGAAGCCAAATGGCCTCCCAGACACCACAACAGGAGGTTCCAGGGGAAGGGTAACCTTGAGGGATGTGCAGAACCAAAGAATGAAGGAGAAGATAAGGCA-GTGAACACAGATAAGGCAAAAAACAAAGACAGGAGAAA a score=6863 s hg19.chr6_ssto_hap7 3066759 154 + 4928567 aagaaaaaaGAAAGAAACCACGTCAAACAGGCAGAAAGGGATACCA-GTAAGAGAGGGGCACGGGGCCAGGGATGAAGTTATTATGGTCAGAGACAAAGTTGGAGGCAAGGGATTCAGGATGAGACAATCACATCTTGTGCCCCATTAAAAGATG s canFam2.chr12 4251852 147 + 75515492 GTGGAGACAGAAAGAAACGAAGTCACACGTG----AAGGGCTACGGTGAAAGAGAGGGGCACAGGACCAGGGATGAAGTTAC---AGTAAATGACAAAGT-GGAGGCAAGGGATTAAGGGTGAGGCAATCGCTTCTTGTCCCTCCTTACAAGATG a score=2968 s hg19.chr6_ssto_hap7 3067063 83 + 4928567 GTAGGACTTCCTGTGGTAACCCTGGAGGCAGAATACTGGAAGCCAAG--TGGGGAGAGGTT---TACTGATATAAAAGGA-CAATGC---Ag s canFam2.chr12 4251999 92 + 75515492 GCAGGACTTCCTGTGGTAGCCCCGAGGACAGATTCCTGGAGGCCAAGGTTGGGGGACGGGGCAGTACTACTACCGAAGGAGCAATGTGGAAG a score=70594 s hg19.chr6_ssto_hap7 3067446 1390 + 4928567 GTGGCTAGTCATGGATCTAAGAGGAAGAGAAACTTCCTTTCCTGCCCCG-TGACTGGAAGAACAACACAGCAGTGAGAGTGATTCCCCTTTCTCCTATAAGAAGAGAGGTGCAGCCTGACCAC-CCTTCAGTTCCTAAGTGAGGGCCCTGGCCCCC-----------ACTTACCAGGGCAGCCATGCTCTCCCCAACAATGGCTGCCACGTCTCGAATGTGCTGGTCTTTGGTGAAGATCACCTCTCCTCCTGAGGCCAGGGCCACTGCTTTGTATGGCTCAAAACGCAGAGGGGACAAGATCTCACGCCGAGCTCGACCCTGAACCCTTGATGTATCTTCAGTCACCAGGAATGTTACCTGTACCCAGAAGAGAGCTCAGTGATTGGGGTGTCCAAGTGCCATCCACTATTATGAATGAGAATC-CCTGTGCTCAAGCTTTCTCCAGAGCTGATGGTTTGTGATAAGGTCTCTGCCTGCCTTCTGGCTGCTGGGGTGGGGAATCCCAATGACAGAACCCCC-TGCCTTCAGTTAGTAGTTGGCCACCCCCTTGTAACTGTCAC----------------AGTGGATTTTTGGCGACTAGAGCCCCAGTTCTTCACATTGTTTATT--AGGCAGGGTCAAATAAAAATTCAGCGTTATTAAGGGTAGGGCCTCTTACGTATATCATTAAAGGTATCAGGAAATGTTCCACTCATTGTCTGCTTCTCCCACCATATACCAAGGCTTGTTGGGCCACCATAGTGTGGTGCAACCCTCGTTATGAGATTGTCATCACAGGGTCTCTCACATCCCTGGGAGGCTAACACTGGGTCTCCCACTAGCTCTGCTCACCCGGCAGCGCCGCTCCTGAGTCAGGGATTCCACCTGGTTGGTGAGAAAGGCATCCTTGGGGGAGGCATCCGTGAAGACAAAGATATCTGAGAGTGGAGGTGTGTGCAGCAGGGCCAGCTGGCAGGGAAGGCAACGACCAGTGTTAACAATGGCAGTAGG---AGGGGAATGGGTAGAGCCACGGAGGATGAAGCAGAAGGGAATATGGCCCGGGAACCCTACAGTGAAGCTAGTGGATCTAGGTGCTGAAGGTGGTGGGGA--------GCCCCAGGAGGGATCTAGCTCCCCCTGGTGGTGGGGCCAGGAAACG--GGGAAGAAGGGAGGGGC---------------CAGACCTGCAGGGCTGACAGGCACATCTCAGGCTCGTCTCCACCCCCCAAGGCATGGATCTCATTAAGCTGTTGCCAGAAGCTGTCAGGGTCACTGGTTGTAAAGACAGGGCCGAACCCTGGGAAGGG-GAAAGGAGGTTAAGATAAGTGAGGAAAGAGCTCCCCTCATTCTTACCCAGAGCCACCTCCCCAGTTGAGGGGCCTGGTGTGCTTCTGGAGCCGACAGGTATTGAAATAACAATACTCCATTATA s canFam2.chr12 4252091 1407 + 75515492 GTGGGGGGCCATGGATCTCAGAGGGAGAGAAACTTCCTTTCCCACCCTTCTAACTGCTGAGGCAACACAGCTGTG---TTAAACCACTAACCTAGGAGAAAGAGAAAGGC-CATGTCGCCCATGCCCTTAGTTCTCAGCTGGAAGCACTAGTCCCTCTGGCCACCATACTCACCAGGTCTGCCATGCTGTCCCCAACAATGGCCGCCACATCCTGAATGTGCTGGTCTTTGGTGAAGATGACCTCTCCTCCTGAGGCCAGGGCCACGGCTTCATATGGCTCAAAACGCAGAGGGGACAAGACCTCACGCCGAGCTCGGCCCTGAACCCTCAGTGGGTCTTCAGTCACGAAGAATGTCACCTGTGCCCAAAAGAGAGGCCAGTACTTGAGTACTCCCAGTGCCGTCTACTATCAGAATTGGGGGTCTCCTGTGC--AAGTGCACTATGGAGCTGATGACTAATGGTAAGGTCTCTGTCAGCCT-CTGACT-CTACGGCAGGGTCTCCCAGTGACACAGCCCCTAGGCCTTCACTTAGTAGTTG-CTTTTCCCTTGTAACTGTCACCCTATGTCACCCACATAGTGGATTATTAGCAACTAGATCTCCAGTTCTTTGAATGGTTTGTTGGAGACAGATTCAAATATGAATTCAG-----------------------------ATCAGACAAGGGATCTGCAAACGTTATACTCATTGTCTTCTTGTCCCACCCCTTGCCAAAGTTGGTTCAGCCACCAGAGCGTGGCGTGATCCTCATTATGAGGTGGTTGTCATGGGCTTCCCCGTATCCCTGGGCAGGTGATGCTGCGTCTCCCATCAG-TGTGCTCACTCTGCAGCGCCGTTCCTGAGTCAGGGATTCCACCCGGTTGGTGAGGATGGCATCCTTGGGGGAGGCATCAGTGAAGACAAAGATGTCTGAGAGGGGAGGTGTGTGCAGCAGAGCCAGCTGGCAGAAAGGGAAAGCACTGGTATTAAAAATGGCAGCAGCGGCAGGGGGACAGGTAGAACCAGGGGGGACAGAATTGAAGGAAATATGACCCTGGAACCCTGGAGGGAAGCTAGGGGCACTAGGCTCTGAAGGTGGGGAGGGAGGTGCAGGTCCCAGGAAGGCTCCAGTTCCCCTTGGTGGCGGGATCTggaaaggaaggaagaaggggaggggcggagggtgggggaggCAGACCTCTAGGGCTGACAGGCACATCTCAGGCTCATCTCCACCCCCCAAGGCATGGAGCTCATTGAGTTGTTGCCAGAAGCTGTCAGGGTCACTGGTTGTAAAGACAGGGCCAAATCCTGGGGAGGGAGAAAGGAAGC------AAGTGAGGAGAGGGATCCCCTCATCCCCGCCTAGGCCTACCTCCCCAGTCAAGAGGCCTGCTACGCTCCAGGGGTGAATGACTATTGAAACAACAGTATTCCCTTATA a score=3953 s hg19.chr6_ssto_hap7 3069184 148 + 4928567 CTTGTcagtgcagggcggggcagggcggggcagggcagggcagACCTAGGTGTCCCTGGTGGGAAGGTGGCCTCCACTCCCTGAAAAAAATGGTGGCATTTCCTGTAG----------GCCTTTATTGGCTACATGTGCGTATATAAAAAAAAAATGG s canFam2.chr12 4253498 139 + 75515492 CTTATATGCACAGGGCAGGGCAGAGG-------------------CTAGTGACCTTTGGGGGGAAAGTGGACCTCATTTCCAGAGCAAAATGGCAGCATCTCCTGTGGTCCTGAGTGGACCTTTACAGGGTAGGTGTGTAGGTATAAAAAGTACCTGG a score=7242 s hg19.chr6_ssto_hap7 3069635 213 + 4928567 AActgggtttcctcataagaaaag----agaccgaatagcacttacctcagaggtttattgggaggactaaatgagttgattttgcaaatcttaagatagtgctttgacacataag---tgctaagttcttagttatACCTTTATTTATATCTTCATCAAACATAA--TAAGT--CTATTAAATGCCAGCCACTGTAGGATGTATGCAGGCAAATAAGACTCAA s canFam2.chr12 4253637 209 + 75515492 Ggcctcagttcctcaccagaaaagccagaaaaataatagtacttacctcagggtgtcatt---agaactaaatgagttgattttgtgaatcttagaat-gtgcattgatccataagacgtactaaatttttaattat--------tCAAAGCTTCATCAAATATGTGTTAAGCTCCTCTTAAATGCCAGCTATTA---GATTTATACAGGTAAATAGGATGCAA a score=4242 s hg19.chr6_ssto_hap7 3069855 72 + 4928567 CAACTCTCAGTCCAGTAGGCattttatttgatcatcatttcaactctgggagttaggcaggATGAGGGAGGt s canFam2.chr12 4254041 72 + 75515492 TAATTCTCAGTCCTAAAGGtattttatttgatggtcatttcaaccataggagataggcaggataagacaagt a score=9371 s hg19.chr6_ssto_hap7 3070077 223 + 4928567 AACTGatacccattttacagatgatgaaatcgaggcaaagaaagtttacatgaccagcctaaagacacacagtca------gactcaagccagagagtctaacttctaatcAAT--GGAAAAGGAATACAATGTAGCTAGTTATCTCAGATGCTTCCCAGAAGCCTGGCCCCAACAACCCC--ATCTTGATACCAATCTCTGTCTATAGGAAATGGAGAGAATTGAAAATGGC s canFam2.chr12 4254113 218 + 75515492 a-ctga--cccattctatggataatgaaattgaggcaaaaaaaggtgaaatgatcagcctaaggatgcacagtgactggtcgacccaggtcagggcgtctgacttccagcccAACAGGGAAGGGAATAAATTATAACTAG------------CTTCACAGGAGCCTGCACCCACGAACCCCCCATCTTCATCCCAATCTCGGTCTACAGGAAGCGGCGAGAATTGAGAATGGC a score=3341 s hg19.chr6_ssto_hap7 3070615 99 + 4928567 TTATTAGCATGAAAGCCTAAGAAAGCAGAGGCCACGTGCCAAAGCATGAATCATGCATTAAACTCAT--GGAAAGTGCTGCCATTTTAGAAAGAGTGGGAG s canFam2.chr12 4254331 89 + 75515492 TGATTAGCATGGAGGC----------AGAGGACCC-TGCCTAAGCACAAATCATG-ATTAACCTCATAAGAAAAGTGCTACCACTTTGGAAACACCAGAAG a score=2745 s hg19.chr6_ssto_hap7 3071041 102 + 4928567 TGCTGCTAATTTTCTGTATGCACACAG-------TAGAGGCTCACTCGGGACTACAGGAAGTGCCACCCC-----------------------GAGCCCACTTCCTCACCACAGGCCTTTATCCCTTACctt s canFam2.chr12 4254420 126 + 75515492 TGCCGATTGTTTCCGATATGCACACAGGTGCCAGTGAAGACTCA------ACCACAGGAAGTGTCACCATTTTGTTAAAGAAGTGGAACCATGAGGCCCATTTTTCCACCAGTGGCATTCACCCCTCACTCT a score=45594 s hg19.chr6_ssto_hap7 3071501 644 + 4928567 AATTTTCCTCCCCTCTACTGTCCTAGCCAGACCACACTTACCTGGGTCATGAAAAGGCACCAGGACATAGTGGACAGGCTCCATGGGGCTGCCTCTCCGCTGCTCCACAAGGTGGCGAGCCTGGATTTTGGCAGCGTTGATCTCCTCACCCATGCTGCCCGTGGTGTCCAGGACAAAGCTCAGGCTGGAGGCTGGGGTGATGTCCAGCAGCCTGGGGAGCAAGCCAGAGACACAGTGAAGGGCCTGCACGTTTGTCCCCAGCGCCTGGTTTCTCCCTTCCCGCAGGAGCGCCTCCCCATGAAGGGGTCCATCCCCAGGAGGCCACTCACCTGGAGAAATCCCTGTCTCCCAGGCGGCTTCGCAGAAGGCTGAAGGCCTGGATGGAGGCTAGAAGGGCCAGTTTTGCAGCCTGGAGGTGCAGCATGTGGTGAGGGGAGAAGCCTGGGGATGTGCTGTCCTTGTTGATGCCTCCCCTCGGTGGCTGGGAGCTGCTCCGGTCAAAATGGCCCCCGTGGCTACATTTCCCTGGGTTGGGGAAAGGGATCTGGAGAGTGGAGGTCAAAAACCCACTGCCTCCTAAGAAAATGAGGCCC-TTTCAGGCCTGGCCTGACCCTCTCACCCCTCAGCAAGGGTTCAGCAAGAAA s canFam2.chr12 4254546 642 + 75515492 GGACTTCCTTCCTTCTACTCTGCTCACCAGACCAG--TTACCTGGGTCATGGAAAGGTACCAGGATGTAGTGGGCAGGCTCCATGGGGCTGCCCCTTCTTTGTTCCACAATGTGGCGAGCCTGGATTTTGGCAGCACTGATCTCCTCACCCATACTGCCCGTGGTGTCCAGGACAAAGCTCAGGCTGGAGGCTGGGCTGATATCCAGCAGCCTGGGGAGCAAGCTGGAGATATGGTGAAGGGTCTGTCCATTTGCCCCCAAACCCTGTCTTCTCAGCTCCCCCAAGAGCGCCTACCCATTGGGGAGCACATCTCACAGAGGCCACTCACCTAGAGAAACCCCTGTCTCCCAGGCGGCTTCTCAGGAGGCTGAAGGCTTGGATGGAGGCCAGAAGGGCCAGTTTTGCAGCCTGGAGGTGAAGCATGTGGTGGGGAGAGAAGCCCGGGGATGTGCTGTCCTTGTTGATGCCCCCCCGTGGTGGCTGGGAGCTGCTCCGGTCAAAACGGCCCCCATGGCTACATTTCCCTGGGTTGAGGAAAGACAGTTGGAGGGAGGATGTAAAAAAAACACTGCCTCCTAAGAAAACGAGGCCCTTTTTTGAGCTGGCCTGA-CCTTTCACTCTTCAGCAAAGGATCAGCAAGAAA a score=25321 s hg19.chr6_ssto_hap7 3072774 645 + 4928567 GATGGTGCTTTGTGGAGGGGAATTCTGGAGTAAATCTTAGGGCGTGGTGGTCAGTCACCACAGCACATGGTGGATCCCCTGATCCCTCCAGCCAGTCCCCCAAAACTGCC-TATGACAAGGGAGAAATCCTATCAGCGGAGGAAGAAGTTGCTCCCCTACCTCAACCCCACCACAGCCTCCTCAGGGGACTTTCCTCCACCCACCCTGTTCCCAGCATCCT-CTCCTCCTAGGAGGAGATGCCATAGCAAA-GGCATACGGGCCTACAGGACAGAGATCCT------------------GTAAGGGAATGACTTTCTCCCCTTACTTCTGGGGAACTTTCTTGTCTGGTACCTGGAGGTTTCGGGGGATGAGTTCCAAAGTAGCCAGAGGTGAGGAGTGTGAAGCCCAGCCAATTCCTGGGGCAGCTCAACTCCTCGCAATCGGAGCAGGTAGGATCGGCCACTGGGAAGAGAGGGCAGGG--CTAGAACCCAAGATTCTGCCACCCCCAGCCTTTATCCCCACCCACCCAAACCTTTTCAGCTTCTCCTCCCAGCTGGGATGAGGCGAACACCCAGAAGTTCCCTAGCA-------AAGCTTTCTGAACTAAAACCTAGGATCATGGGCCCGCAGTGAGCCTGAATGTTTGAAACTAGGGCTGTGCTGGAAAAC s canFam2.chr12 4255188 630 + 75515492 GATGACATTTTGTGGAGGCCAAATCTGGAGGAAATCTGGAGG------GGTCCATCATCATGGTGTACAATGGATCCCCTCATCTCTCTGGTCAGTCCGCAAAAGCTGCCGTGGGATAATGGGGAAGTCCTCCCAGCTGAGTGAGCAGCT-CTTCCCCACCTGA---CCTTCACGGCCACCTCAGCAGGCCTCCATCCACCCACCCCATTCCTGACATCCTCCTTCTTCCAGGAGCTGATGCCACAGGAAGTGGGACAAGGGCCTGCAGTTCTGAGATCCCTATGGAAATCCCTCAGGGGAAAGGCTGTGACTTTCTCCCCTTACTTC-------------CACCTGGTACCTGGCGGTTTGGAGGGATGAGATCCAAAGTAGCCGGACGTGAGGAGCGTCAAGTCCAGTAAATTCCCGGGGCAGCTCAACTCCTCACAATCAGAGCAGGTAGGATCGCCCACT-GGAAGGGAGGACAGGAACCTAGAGTCCACGGTTCTGCCACCACTGGTCTTTAGCCCCGTCCACCCGAAC----TTGGGCTTACCCCCCAGCTG---------------CCCAAAGCATATGGGCACGCTTCTAGGCTTTCTGAGCAAACACCTGGAG--GTGGTCTGGTGATGAGACCAAGTATTTGGGACGGGGACTGTGCTAGGAAAC a score=126705 s hg19.chr6_ssto_hap7 3073545 3545 + 4928567 TAAGAAAAAAACAAACACAGTACGTGTAGGGACCAATCCTATGGGGATTATGCCCTCTGTGAGTTG----------------------TGGACAGGAGGCAGCTTC-----------CAGGTGAGAGGGTGAGGGGGCTGTGAGAGAAGGCCCCATGGgagtca-------gtgcggggaggaagccacacttaagacgggactgaggtctggagacc-tggtcctagctacttttccctgtgtgaccttggggaagctgcttaactgagccaggcgttgcttggactgggggacctca---gtccttgtggagattaagtaacatcatacCCTCTGGGACTTCAGAATGTGACACAGTGGCTGGGTGGACT-----GAGGTGGCCCTGTGGACTCCTGCCTCACCACCAGGGTCACAGCCATACCTTGTGCCAGGTTCTGGAGCTCCTGCCTTGGCCAGAGGAGGTGAGGGTGTGGCTGCTGCTCGCCCAGCTCCACCCAGTTGCTATGACTGTAGAAATCCTGGTCCGGAGGACAGGAGAAGGGGAGTGAGGCACTAGTCTGGCCTTTCTCACCATCTCCAGCACTAATATGCCACTCCTTTGAGTTCCCCATCCCGAAAGTCCCCTC---CCACCCCT--------ACTGCTCCCACCAGACACCCCAAGTCCCCTCCACTGCCCTCTCTCCATTGCtcagagcagagctttgcccaggtggaaactgtcccagcatctcttccc----agctcagagtctaacccaagg-cctctctcggcctgcagagtcctgctgcgtgtgctgctccctcagctctctgacctcgcagccttcctctctcaccctc--acttctctccagccacagcgccctccttgctgttcctACAGGAAGCACTGCCAGCTTGGAGGTGGGGAACTGGGACACAGCCTCGGGGCACCGCGTGCCAGTG--CCCACCCCTTCCAGAGTGGAGGAGACATGATCAAGAAGGCACCATAGGACGCGCTCCATCCCGGACAGGCACGGAAGTGAAGAC---------------CCCTCTGACCATCAACC---CAACCCTGTTCTCACCTGCAGGGCATGAAGTGCAGCCCCGAGGCGCTGGCGAGCCAGGGTGTGGTCAAGGGCCCTGGCTGCCACCACGGTCTCCCGCAGAGCCCCTACCAGGCGCGCGCGTCCCTGACCCAGTCGCTCAGCATCAAAGTGCAGGTCGGGGTCATTCCTGGAAGTTGGCAGGAAGTCCTGGGCTGCATTGGCACGAGACACCTCACCTAAGGCTGCTCGGAACCGCCGAGAAGAA---CCAGGTCCAAAGTAGGCGGCAAAGAGGTCATCAGCAAGGAGTGTTCGACCCTGGGGAGAATAGCGGGCGACGGGGCTCCAGGGAGGCCCTTTGGATTGACTGTTGCCCACCTTATCTCAGCAACTGACACTCAAGGC---------TGGGTATGAGGGTCCTGAGCCCCACAAAGGAGGGACAGTCCCGGACCTTTCTAAGGAGGGGGACTCCTAATTTCAGGACCAAGACTACTGGGTATTATTGC----TGCAGGGGTGGGGC--CATGGGTGTCTCTTCTCTTGGCAACCAGAGCCCTCAAGGAGTAGAGGCCCCATGGAATTGGGGACTCTGGCAGGGGTGTGACAGGACCCTGGGATGCTCACCAGGAAGTCCTCAAGACGAAGAGGGGGGCGGCCTGGGGGTGGCTGCTCCAGGAAGAGCTGCAGGGTGACGTTGAGCGCTGCCTCCTCAGTTAGGTCTTGGTGGGTGATGGAGCCAGGGGCAGCCAGCAGGCTCCAGATGTTGGGGAAGAAGGCAGATGTGGGGGGCAGCA---ACAGCTGCAGCAGAAGCAACGCTGAGGGGCCCGGGTGGGATTGGGGGACCTCCGTGGGGAGCATGGCTGAGACATGGACCTGGGAGACAGAAGGCTCTCAAGGGAGGAGGAAGCAGCCGCGATTCCAGGGCAGG-CCGGCTCTGCGGGTCTCCATGGGAACCTGCTTTACCTCAAAAGTCGTGTCTGCTCCAGCCTGGCTTCCCCACCCTCTC------GCTGTCACCCAGACAACCTGAGGGCCTCATCGGACCATTAGGGACATACACACCTGCCAGGAGAGGGGTCCAAGGTTCCTCCCCCACGCCCCCCTCCCCAGTCCCTGGCTGCGTCCCCAGCCCTGCCGCAGAAACACTCCCCATGCTCAGGAAGCCTGAGTCCTCTC---AGGCC-CTCCCCTACCTGGTTGCTGGGTCTCCTGGGCAGGGCTGGCCCGGGCTTGACGTCACAGGGCACTTAGGTCAGAGTTATAATTAACCGA-----GGCTCAGCAGAGGGG---GAGGAAGGCCTCAACAG------GGTGGGGGAGGACAGGCAACCCCTGGCCCTTTCGCTCCTGCCTGCCCAAAGCCACAGGCAGCAGCCCACGCCAGGGCGGGCCTCCCTTGGCTGCAGTGCGGAGGTGAGTG----AGAGCTGGGGAGGAGGAAGGGAGTAAGCAGCGTGACTCAGGCCTGGCACAGTGCCAGGGACAGACCCAGATAGACGCACCCCTCTGCCCTCCAGAACCAGGGCCTCACTCCCACCCTGCAGCCCCCAAGGATTCAGGCACCCAGCCCCTCTGCTCCCCTCTCTGCCCCCACCACAGATGACAAGA---GGATTTTGTGGGAAAATATTTTATTGCTGCCATCCCCATGGTGAGCCGCTGGGGGTGAGGGGTGAAGCTGGGTGGTGGATCACAGCATCTTCTGGAATAGGGCGATGGCCTCATCCACCTTCCTGAGCTCTGCTTCTGTCTGTTGGAGCTG-GAGTGGAACCAGGGGGTGGG-----------TGAGGACCCAGGTCCAAGTGAAGAGAC----------------------------------------------------------------------------CCCCAAACACCCAGGACAACA---------AAGTTGGAAAGATGAGCGAGGACCATGGGAGGTCAGTAGCTCAGAGGAGGCGTGAACCTGGCTGGCCTGGCTCCCCACCCATTCCCACCAGC-----------------ACCCCCACTTCCACCACCA----CCTCTTGGGTCTTGCCTTTTTCCACCAAGTGGTGAGTCCCCAAGAACAAAGGAACCTCAGAGCCTACGTGTTCCCCATTCAGT-GTCCCCACCT---------AAGCAGGA------------GAGCACAGtctcccaggccggtcac------ttcatttgtcagatgatgatgatgata-ttgcccccctcccagggctcttgggagaaccaagtgagatTAACCACGTCCACTCAAGGCTCTCTAGCT------CTTGGCCTCCATGACTGGTTTTCTCTGTGTCTGTGCAGTTTACTCCACTGCTTCTCTCTGGCGGAACCCAGGAGGCAGGGGACAAACAAGACTGGCCTTCCAGGGTCAGCCCAGTAGGCTTGAAAGTAAGTGGTGGGAGGCCCAGGGCTCCCCGACTACATG--TGGACCCCAAGCCCAGCCCCAGGCATGCAGGTTTCCACATTTTGggcagctgggtggggtacgaagggtctggctgggagataggatgcctggttctaggtcagcctccgtctcccacctgt-tgtgtgaccctgggttgtgccc-agcccccagctgctccccatgtgtaaggggagggCCTTCTATGGTCCCT----GCTCAAAGCGCCTGGGCTCCATGCTCCCCAGTGGATTCCCCAGGGTTGGGTACAGAGTCCAGCTTCCAGACCAGGATTGG s canFam2.chr12 4255818 3464 + 75515492 CAAGAA-----------------GCATGCGGACCAGTACTGCGGGGACTGAGCCCTCTGTGAGCCGAGGACAGGAGGCGAACTTGTAACGGACAGGAGGCAGCTTCCGGTCATAGTTCAGGTGGAAAGAAGAGACGACTATGACGGATAGTCCTGGTTGCTCCATCCCATGTTGGGGGAAGGAAGCCACATGAAAGA-GAACTTGAGGTCTGTTGACCTTGGTCCTGGCTCTGTCTCCCCGGGTGACCTTGGGGAGGCTATCCAGCTGACCTGGCCTTTGGCTGAGCTGGGTGACCTCACAGGTCATTCCAGAGAAGAAGCAATGGCACATCCTATGTGACCTGAGGATGTGACACAGTGGCTGGGTGGGCTGCCAGGACGTGGCTCTATGGGTTCC--CCCCAAGCCCCGGGTCACGGCCATACCTTGTGCCAGGCTCTGGAGCTCCTGCCTCGGCCAGAGGAGGTGAGGATGCGGCTCCTGCCGCCCCAGTTCCACCCAGTTGCTGTGACTGTAGAAATCCT-GTGGGGAGGAAGGGAGA-------TGAAGCACTG---------TCGTCATGATCTCCAGCCTTTAC-TCCCACTCCTTTGAGTCCCTCATCTGCAAAGCCTCCTCTTACCACCCCTTCCCCCTCCCTGCTGCTGTCAGATAACCCAAGTGCCCTCCAC-ACCCTCTGCCCGTTGCCCAGAACGGAGCTTTCCCCATGTGGGAGAC-TCCTAGTGTTTCCTCTCTTCGCACTCAGAGCCCACCCAAAGGCCCTCCAGTGGCCTACAGGGCCC-----------------------ACCACTGACACCAC-GTCTCCCTCTCACCTCCTCTGGCTTCTCCGCAGCC-----------------------ACAGGAAGTGCTGCCAACTTGGAGGTGGGGAGCTGGGGACCAGCCTCAGGGCATTGGCAAGCAGCACCCCCATCCTTTCTTAAGCAGGGAGGTCTCTACCCGGGGG-----ATGGGA-----------------AGACCCAG-AGTGGAGACACCCACCTGCCCCCACCCCCTTGCCCCCGACCGTTTCATGCTGTTCTCACCTGCAAAGCATGAAGTGCAGCCCCAAGACGCCGGCGGGCCAGGGTGTGGTCCAGGGCCCTGGCTGCCACCAGGGCCTCCCATAGAGCCCCGGCCAGGCGTGTGCGCCCCTGGCCCAGCCGTTCAGCATCAAAGTGCAGGTCAGGGTCGTTCTTGGATGTTGGCAGGAAGTCCTGGGCTGCGTTGGCACGAGACACCTCACCTAAGGCTGCTCGGAACCGCCGGGAAGGAAACCCAGGCCCAAAGTAGGCAGCAAAGAGGTCATCAGCAAGGAGGGTGCGGCCCTGGTGAG---AGCAGGTTAGGGGGC-----AGGGGCCCCTGGATTAGGCCACTGCCCATGTTTCCTCAGCCACCATCACTCGGGGTAAGCGTGCAAGGAATTGAAGGTGTTGGTCCCTATATGAGAGAGGCAG---------------------------------TTCTGGATCAGGACTCTTGGGTATTGTTGCAGGGGGTAGAGGTGGGGAGGCATGGA-------------AGAGAGGATGGCCCTC-AGGAGGAGAAGTCCCAGGGAGTTGGGGAATCCCGCTGGGATGGG--AGGACCCAGGGATGCTCACCAGGAAGTCCTCAAGATGCAGCGGGGGCCGGCCTGGGGGCGGCTGCTCCAGGAATAGCTGCAGGGTGACATTGAGTGCCGCCTCCTCAGTCAGGTCCTGGTGGGTGACGGAGCCAGGGGCAGCCAGGAGGCTCCAGACGTTGGGGAAGAAGGAAGATGCGGGGTgcagcagttgcagcagcagcagcagcagcagGGAGGTGCTCAAATGGGAGAGGGGCACGTCTGTAGGAAGCATGGCTGCCACGTGCACCTGCCGGACAGAAGGCTCTC--GGGAGGAGGAAGCAGCTGCGAGTCCAGGGCAGGCCCAGCT----GTGTCTCCAGGGGCACCTGCTCTGCCTCAGGCCCCAGATGGGTCCCAGCCTGCCTTCCCTGCCCTCTCCCCTCGGGTGTCAACCGGA-------------------GGCCA-TAGAGGTACAGACACCTG-CAGGAGAGGGA-CTGAGGCTCCTCCCCTAGGACACCCCCCC---------------------------------ACACACACCCAA-----GGGAAGGCTGAAACCCCTCTCTAGGCCTCTCCCCTACCTGGTGGCTGGGTCTCC--GGCAGGGCC-ACTGGGGCGCGGTGTCACAGGGCACTTAGGTCAGAGTTATAATTAACCTAAGGAGGATTCAGTGGAGGGGGGTGGGGCAGGCCCAGGCAGGGGCACGGTGGTGCAGGACGGGCAGCCCCTGGCCCCTCTACTCATGTCCACCCAAGGTTGCGAGCGGCAGCTGGCACCAGGGCGGGCCTCCCTCAGCAGCAGCACAAAGGTGAATGGAGAAGAGCT-GGGAGGAGGAAGGGCGTGAGCAACATGACTCAGACCTGGCCCAGTGCCAGAGGCAGATCCAGACAGAAGCACCTCTCTGCCC-----ACCCCGTGCCTCTAGCCTAGCCTGCGGCCCTTGGAGGTGCAGGCACCCA--------------------GCCCCAATCACACAAGACAAGACATGGGTTTTGCGGCAAAATATTTTATTGCTGCCA-CCCCATGGTG-GACACTGGGGGTCATGA--GGAGTCG---GGTGTATCACAGCATCTTCTGGAATAGCGCAATGGCCTCATCCACCTTCTTGAGCTCTGCTTCTATCTGTTGGAGCTGCCGGTTGGACAAGGAGAAGGGGTGGTGGGTGATGAGGACCCAGGCCCAAGAGAGGAGACAAATGTCAGGAATGGGGGCACACAAAAAGAAAAAAAAAAAAAGGAATGGGGGCACAGCCCAGAGTCACACAAGTGACCCACAATGCCCACGATGGCAGGGGGGTCCAGGTTGGAAAGATGGGTGAGGGCCATATACAGTGAGTATTCTGGGGACTGAGAGAGCATGGCCAGCCCATC-CCCCACTCATTCTCATCAGCCTCCCCCATCAGCACCTGCCCTCCCTCCCAGCATCATTGGCCTCTCAGGTCTGGCCTTCTGCC----AGTGTTCAGTCCCCAAACACAAAGGGGCCTCAGAGGC--CTTGTGCCCCAGCCAGTAGCCCCCACCCCCAGGTGGACAGTAGGACACAGGAGTTAGGGACGCAGGCTCCTACGCAGG-CACTGGGTTTTCGTCTGTAAAATGGCAATGGCCATACCCACTGCCCTGAGCGGGCTTCCAGGCGAAT------GGATAGACAGAGCTCTGCTCAGCCACTACGGCTTCACCACTCAGCCTCCAT--TCGTTTCTCTCTGTGTCCATGTGGTTCACCCCACTGCTCCTCCCTGGAGA----------------------------------TCCCAGGTGAGCCCGCTGGGCTTT---------------------------------CTATGTGTCTGGGCCCC-AGACCAGCCCCTGGCATGTG----------------------GGATGGGGAGCAAGGGCTCTGGCGGGGAGGCAGGATACCT-ATTCTAGGTCTGCCTCCGTCCTCACGTTGCGGGTGTGACCCTGGGCTGTGCCCTGGCTCCTAGCTGTTCCT--TGTGTAAGAGGAGGG-ATTACACGGACCCCACCGGTTCAGGAGGTCCGGGCTATCTGCTCCCTGGT-CACTGCCCAGGGCTGGGT--GGAGTGCAGCCACGGGACGGGGTCTGA a score=35277 s hg19.chr6_ssto_hap7 3077507 583 + 4928567 TGATGGAGGAAGGGGATGGTGTGGGAAA-----------TGCCCACCCAGGCCACACACCTTGGCTTCATCTGCCTCCTGGACTTCGAGCGGCACCTTGACAGGATAGCCCGAGGCAGCACGGCGTTCCCGCAGACGCTGGGCCTGCCGCTGGGCCTCAACTCGCTTGGCTTGCAGCTTGCCCAGCTCCCGTGCAGGGTCCACCAGCCCCTGAAGCTGCAGGTGGATGGAGCAGCGATCAGAAGCCAGAGCCACAGCGCAACCCTGGGGGGCGGGAGCCCCCAGGGCCAGAACAGCCACCACACCTGCGCTGGCCAGGGCCTGCACGTAGCCCGACACCGCCGATGCCAGGGCGCCCGTGGCCTCATCCGCCACTTCCAGGAAACCTGCCAGGGAGGGAGAAAGGT--GAGGCCTAGCTCCATGGAGACAGGAAACCAAGCAGTCACTGCCGGACACTGGGTCCCAGAGTAGGCTGAGGGGACAGTGGGATGGGGCGGACATGGGGGCCTGAGGCTCACAGTCAGGCCGGATCCGGGTGAGGTTGTAGTCGGCCCGCAGGGAGCGCACGGCTCGCGTGATGCTTAGCGCCAGCTCA s canFam2.chr12 4259282 593 + 75515492 CGATGGAGGGAGCACATGGTGTGGGAAATGGAGAAGGGGTGCCCGCCCACACCACATACCTTGGCTCTGTCGGCCTCCTGGACTTCAAGGGGCACCTTGACAGGGTAGCCTGAGGCAGCGCGGCGCTCCCGCAGACGCTGTGCCTGCCGCTGTGCCTCGCTGCGCTTGGCCTGCAGCTTGCCCAGTTCCCGGGCCGGGTCCACCAGGCCCTGCAGCTGCAGGTGGACGGAGCAACGGTCAGATGCCAGGGCCACAGCACAGCCCTGTGGTGCAGGAGCCCCCAGGGCCAGGACAGCCACCACACCCGCGCTGGCCAGCGCCTGCACGTAGGCCGACACTGCCGATGCCAGAATGCCTGTGGCTTCATCAGCCACTTCCAGGAAACCTGTGGGGAAGGGAGGAAGGTGAGAGATCTGGCCCCAAGGAGACAGGACATGAGGCAACCGC-ACAGGAC-CATGGTCCCAGAGTGGGCTGAGGAGACAGGGGCAAAAGGCAGGCG-GAGGATACGAGGCTCACACACGGGCCTGATCCGGGTCAGGTTGTAGAAAGCACGCAGGGAGCGCACGGNTAGCACAAAATACGATaaaaaatta a score=189492 s hg19.chr6_ssto_hap7 3078177 3617 + 4928567 TCTCCAGGCCATGCCA--TACCTCTGAGGGCTCCGGGTAGGGGGTAACACAGAGGCTAGGGGGAGCTTGCGGCATCCTCCGGGGCAGCCTCTGGAACAGCTCCTCCGTCACGAAGGGCATGAAGGGTGAGAGCAGCCGCAGGCCAACGTCCAGGCAAGTGTACAGGGTCTGGCGGGCACACTCAGCTGCCACCTGGTCCACCCCATTCAGTACAGGTTTCAGGCACTCCTAGGGGA-CGAGAGGTACAGGGCTCACGGCTGGAGGTCTAGCCTTGAGCCCTCGCTGTGCCTGTGAGGACTGGGAAGGGGATGGGTTGGCTTAGGTCTCAAGGCCAACT-CTGGCAAAACTGAGCCCAGGGCTCTGCTGCCCACCTGCCCCCACCATCCCCTGCCCCGCTGTGCTCCTTCTCACCAAGTAGACATCACAGAGCTCATAGAGCCAGAAGCTGTACTGGGCAGTGGTGACGGCCGGGAAGTCGTAGGCCTGGAAGCCTTGATTGCTGAGCCTCACAGCCTCTGTCAGGCGGCTGCGGATCCAGCGGTCCACCAGGCTCTCATGGCCTCCGGGCTTGGGGAGAGAGGGTGTATCAGCCGGCGGG----------CCAGGGGAGGGTGCCAGAACCCCATGG-------GGGCAGGAGTCATGGGCAAATCTTCATCC--AGAGTCTGATGAGTCCAAAGCAACCACCTATGTGCCAGGATCTGG--GAAGAAGTGACAGGCCCC------------------AGCCCCCAATGCGCTGGGCTTTCCCTTTAACTGTCTGTCTCTGTGTCTATCTGTCCCCCCAGCTACATGGAGGCTGCTCCGGA----------------------CAGGGGT---------------------------------ACAGCCTGTGTGAGTGCTGCCAGCTTTGCTGCCCACCAGGCCCTTACCTGGGAGGTGGGTGAGGGCACAAAACCCTTCCCAAGGCCACGAAGGGCAAACTTGGTGGCATTCCAGAGCTTGTTGCAGAAGTGGCGGTAACCCAGTATCCGGTTCACATCCAGGTTGATGTCACGACCTGGGTCGGGGGTGAGATGTGAGTCCTCATCACCCTCTTCCCAGCCCATGCCCACCAGAGGCTCAGGGTGGAGAAG---AGGGATGGGCCTCACAGAAGGAGGAAGGAGTGGCTGGGAGGGACGCTTTGGGGGCCATACCCTGGGACATGTAGGCACATAATCCAAACCGGAGAGCATCGGTGCCACATTCAGGAATCCCCGCTGGGAAGTCAGCTTTCTACAGGGAAGAGGCAGGGGGAGGAGCGTCCTCAGCCAGCCCCATCCACGCTGTGCTCCTGCTTAGCCC---AGCCCAACCCTCCATACCTGCCCTTCTTTGGCCTTCTCCACCTCGCTGGGATCCAGGTTGCTGTTCAGCAGCTGGTTGTGGAGGCCCTGAGGGTGGAGTGGGAGCAGTCAGGTGGCTGTGACCACAGCCCCACGGCCCTTCCTGG-CTGGCCCAGCACCCAG-CCCACCTGCAGGGAGATTCCATAGATGACGTCCAGGGGATCGATGACATTGCCTAGAGACTTGCTCATCTTCCGGCCGTGAGCATCTCGCACGATGGCATGGAGGTAGACCTGCAGAGCAGG---TGGGGAGGCCCATGAGACTCAGTCCTCTCCTTCCCCGGCCTCAGTGCCCCGACCAGGACTGTGTCTGGTCTACCCCACTGTGAACCTCAGGTCCCACTGAGTGTCCCCAAGagctcgttgagcgcctttatgtgaatcagaagcactccttcctctgggaagatgaagccctgggcacaggaatcactgagcag-ggcccaggctggatttcaaccccacaccagcccccgggtcaggcCTGCCCACAGCTAACCCCATGCCCCAGCCACGCGGGGTCTGCGCTGCAGCACAGGACGGTAGGAGAGGAGGCTGGGGGCGATGGGAGGGTCTCGGCTGTCTCCGCACCTCTCTAAAGGGCAGCCTGCCCGTGAGCTTCAGGCCCAGCATGACCATCCGGGCCACCCAGAAGAAGAGGATGTCATGACCGGTCTCCAGCAGTGTCCCGGGGTAGAACACACTCAGGTCTTCTGACTGAGGGCAGACCAGGGTGTGAAGGGGAGCCAA-CACCCACCCTCCAGTCCCCTGTCCCG--CCAAGCCCCGGCCCCAGGAACACACCTGGTTGGGCCAGCCCAAAATGGATAAGGGGAAGAGGCCAGAGGAGAACCAGGTATCCAATACATCCTCATCTGAGAGAGGCCAAAGGTCAGAGGTCAGAGGGAGTGGAGCTCTGCCCCCCACAACT-CCCTCCAGACCCTCAAAGCCCCGCCTTGCCTTGCTGGAGACTGATCTTGTCAGGGGACACTCCGAACTCCTTGGCTGCCTTCTCCCGGGCCTCCGCCTCATTGCGTCCACTCACCCAGTACCGCCCATCAGGGTCCTGCCACAGGTGCAGTGATTACCCAAGGGGGTGTGTCTGCTTCTGGCTC-ACCCTG-CCCCTCCCCCCACCAAGGACCCAGTAAACCCACCACTCCAGCAGGGTGTCCCAGCAGCTAGCTCTGGCCCTCTGCTCACCTCCCCAGGGGGCACCGCTGGGTCACTGACAGTGACAAAGTAGGCTGGGATGCGATGGCCCCACCACAGCTGCCTGGAAATGCACCACTCCCTGCAAATGTCGGGGAGGAG------AAATCAGGGAGGGCCTGATGGAGCCTGGCCCG------AGTGAGCCCTGCTCAGCC-CTCGGCAAGCCCCTCCCACAC---TGAGGACCCTACACACCGGATGTTGTCCATCCAGGCATGCCATGTGCGCTGATGGGCCTCAGGCAGGATGCGGAGGTCACCCCGAGTCACAGCGGCGCTGGCAGCCTGGGCCATCTCCCCGCAGCGAACGTACCACTGCGGCCGCAGCAGAGGCTCTACCACGTCCTTCGACCGGCTGGGGGTACACGTAGGTGAGAAGGCCAGGCGGTAAAACCCTGAGGAGCC----------CTCCATCTTCCTCCCGT------CCCAGGCCCCCACCCTCACTTGCAAAGTGGCACCACCATGGGGTTGTCCTCAATGCCACGGAACAGTCCCCGCTCCTTCAGCGCCACCAGCACCGCTTTCCTGGCCTCAAACCTGGGCAGGCCCTGGGTAGGAATGAGGCCTCATCATGGCGATGCCCAGCCATCCCTCCATCTCCCTGACCCGGGCACTCTTGCCTCAGGCAGCCTCACCAGGAAAGGCGGAGGCACATTGATGAGGGCCCCCCGGGAGTCCATGATGCTGATGGCCTCCAGCCCGTGCCGCTGCCCAACTTCATAGTCATTTTGGTCATGTGCGGGGGTGATCTTCACAGCACCT-GGGTGTACATCAGGATGCCCAGGTCATGAGGGACTCCACGGAGTTC--CTTCCTACACTCACCTC-TTTTGCTGAAGGATGTAGCTCCGAGACCACTCCTGGCCCCCACTTGTCTAATACAGTCCCTTGAGAACCACCCCAAGCTCTGTCTATTTGGCTGAAGCTTATTTTCTTTTTCTCTGAGA--GAAGATGGACAGCTAGGGTGCAGCTC-CAGTCTTTTCCTCTCCCCACAGGACCAGCCCCTTGCCCACCTGTGCCAAAGTCCATGTCCACAAATTCATCGAAGACAATGGGAAGGCTCCGAGACAGGAATGGGTGGATCACGTTCTTCCCCTTCAGGTGCTGGGGGCGGAAAGATACC s canFam2.chr12 4260026 3560 + 75515492 CCTCCCAGCCATACCCCTTACCTCTGAGGGCTCCGGATAGGGGGTAACACAGAGACTAGGGGGTGCTTGTAGTGTCCGCCGGGGCAGCCTCTGGAACAGCTCCTCTGTCACAAAGGGCATGAAGGGTGACAGCAGCCGCAGGCCAACATCCAGGCAGGTGTAGAGGGTCTGGCGAGCACACTCGGCTACCACGTGGTCCATCCCATTCAGCACGGGCTTCAGGCACTCCTAGGGGACCGGGAAACATAGGCCTCA----GGGACGTCTA-CCTCCAGCCCCCACTGTGCCTGTGA-----------------GGCTGGCTCTGGTCTCAGTGCCAACCACTGGCAAAGTGAGGCTCAGGGCTGTGCCGC---CCCACACCCACC------------------CTGCTTCTCACCAGGTAGACATCACAGAGCTCATAGAGCCAGAAGCTGTACTGAGCAGTGGTGACAGCTGGGAAATCGTAGGCCTGGAAGCCTTGGTTGCTAAGCCTCACCGCCTCAGTCAGCCGGCTGCGGATCCAGCGGTCCACCAGGCTCTCGTGGCCTCCAGGCTTGGGAAGAAAGAGCCTATCAGCTGGGAGGTACCATACGCCTGGGGCAGGGAGGCAAAAGCCCATGGCGGGGGTGGGCAGGAACCATGGGCAGCTCTACATCCCAGGAACCTGCCAGGTCTGAAGCCACC----ATGTGCCAAGTACATGAAAAAGAAAGGACAGCACCCCCCCATCTCCTTGAGGGAGGACCCCAATGCCCCAGGCTTACACTGTAACTGTCTGTACCTGTGTCCATCTGTCCCTTCAGTTACATGAAGGATCCTCCAAAGCAGGGCCTGGGCCACCTGACTCAGTGGTCAGGATCCTGACACAGCACTGGCCATGCTTGTGGCTGCCTGGGCGGGTGCTGCCCACCTCGCCGCCTACCAGGCCCTCACCTCAGAGGTGGCTGAGGGCACAAAACCCTTCCCCAGGCCCCGGAGGGCAAACTTGGTGGCGTTCCAGAGCTTGTTGCAGAAGTGGCGGTACCCCAATATCCGGTTCACATCCAGGTTAATGTCACGACCTGGGT-GGGAGTGAAGGGTGAGTCCTCCCCATCTCCCTCCTGGCACGTGCC-----------CAGGGTGTAGAAGGACAAGGGTGGGCCTCAGGGAAGGAGGAAGGACT---TGGATGAGAGGTTTTGGAGGCCATACCCTGGGACGTGTAGGCACAGAGTCCAAACCGGAGGGCGTCGGTGCCACACTCGGGAATGCCTGCCGGAAAGTCTGCCTTCTGTAGGAAGCAGTCAACGGG-GGGGCGTCGTGAGGTGGCCGCACCCTCCTCGGCCCACCCTCTAGTCCCAGAGCCCAG-CCTCAGTACCTGGCCATCTTTAGCCTTCTCCACCTCACTGGGGTCCAGGTTGCTGTTCAGTAACTGGTCATGGAGGCCCTGAGGAGGAGGTGGGAGTGGTCAGG-AGTCGTGGCCACAGCCCCATAGCCCTGCCAGGCCTGGCCCAGAGCGCGGCCCCACCTGCAGGGAGACTCCATGGATGACGTCCAGGGGGTCGATAACATTGCCTAAAGACTTGCTCATCTTTCGGCCGTGGGCATCTCGCACGATGGCATGAAGGTAGACCTGGCGAGGAAGAGCAGGGAGGGCCCGTGACAATGTATGC---CCTCACCCAGACCCAGTGCCTGCCCAGGGCCTGCATCTAGTCGGCCCCATTCTGAACCTCGGGGC---TTCGGGGTCCCTACCAGCGCACTCAGCACCTTTGTGGGCATCAGAGGCACTCCCTCCTCTGCAAAG-------CCAGTGCACA-GAATCACTGTGAGGAGGCCCTGGCTG-----------------------------AGGCCCACCCACGGCT-------------------GCA--------GCTGTGGCACGGGATGGGA-------------GGGACTGTGGGGCGGGTTCGGCAGTCTTCACACCTCTCTGAAGGGCAGCTTGCCGGTGAGCTTCAGGCCAAGCATGACCATCCTGGCCACCCAGAAGAAAAGGATGTCATGGCCCGTCTCCAGCAGCGTCCCCGGGTAGAACACACTCAGATCTTCTGACTGGGGGCAGAGCAGGGCGTGACAGGGGGCCAAGCCCCCCCCCCCCCGACCCCCACCCCATCCCAGGCTGGGCCTTCAGGAACATACTTGGTTGGGCCAGCCAAAGATGGAGAAGGGGAAGAGGCCAGAGGAGAACCAGGTGTCCAGTACGTCCTCATCTGAGGGAGGCCAGGGGTCAGAGGTCAGAGCGGGTAGGG----ACGCCTCAGCGCTGCCCTCCA----CCCCGAGCCCGCCCTTGCCTTGCTGGAGACTGATCTTGTCAGACGACACTCCAAACTCCTTGGCTGCCTTCTCCCGGGCCTCAGCCTTGCTGCGCCCGCTCACCCAGTACCGCTCGTCGGGGTCCTGCCACAGGTGGAGTGAGTGCCAAGGGGGGC-------CCTCTGCCTCGGCCCTGACCCCTCCCACTGGCGAGGGT-------------------------------------CTAGCTCTGGCCTGGTTCTCACCTCCCCCGGGGGCACAGCCGGGTCGCTGACTGTGACAAAGTAGGCTGGGATGCGGTGACCCCACCACAGCTGCCGGGAGATGCACCAGTCCCTACAAGTGGTGGGGGAGGGGGCCGTGAGTCAAGGGGTG-----TGGGGGGTGGGGGGTGAGGAGGTGTGCCCCGGACAGCCTTTCGGCCAACACCCACCCCACGTGGAAGGGCCTGACGCACCGGATGTTGTCCATCCAGGTGTGCCAAGTCCGCTGATGGGCCTCGGGCAGGATGCGGAGGTCTCCCCGCGTCACAGCGGCACTGGCGGCCTGGGCCATCTCCCCACAGCGCACGTACCACTGCGGCCGCAGCAGAGGCTCTACCACATCCTTGGACCGGCTGCAGG-ACACGTGGGTGGGGACATCAGGTGGCGAGCCCCCAAGGAGCTGTTCCATCCACCCCACCCCACCCCCGCCACCCACCCAGGCCTCCAGCCTCACTTGCAAAGCGGCACTACCATGGGGTTGTCCTCAACACCCCGGAACAGCCCCTGCTCCTTCAGCGCTGCCAGCACCGCCTTCCTGGCCTCAAACCTGGGTAGGCCCTGGGTGGGAGACAGGCTCCATCACGGCGAGGCCCAGACACCCCAAGGTCTCTCAGCCAC---CACCCCAGCCCC-GGCAGTCTTACCAGGAAAGGCGGGGGCACATTGATGAGGGCCCCTTGGGAGTCCATGATGGTGATGGCCTCCAGCCTGTGCCGCCGTCCGACCTCGTAGTCGTTCTGGTCATGGGCAGGGGTGATCTTCACCGCACCTGGGGTGTTCGCAGGGGTGCCTGAGGCACGAGGGACTCAGTGGAGCGCCTCTCTCTACACACACCCCGTTTTGGTGAAAGATGTGGCTCCCTGACCAGCCTTATCTCCCACCTCTTTGGTACCGTCCCCTGAGACCTAGACCAAGTCCTGCTGGTCCAGGAAAGGCTTGTTTTCTTTTTCTTTGGGAAGGAAGATGAATGACTGGAGTGCACCTTGTGGCCTCCCTCTCTCTCC-CAGGA-CAGCCCCTTGCTCACCTGTGCCAAACTCCATGTCCACAAAATCGTCAAAGATGATCGGCAAGCTCCGAGACAAGAATGGGTGGATCACACTCCTCCCCTTCAGGTGCTGGGGACAGAGGGAGACA a score=86113 s hg19.chr6_ssto_hap7 3082560 1856 + 4928567 TTAAAAATGCACGAAGGGCTGGGCCCAAGTCCTTCCTTTCCAGGGCCCTGACTATCCC-AACACTTGAACTCCCCCAAACAGTCCCCAATAGCTCTACCCTCAGAGCTGGGAAAGAAGCTGAAGACCAGTTTCTAACCCAGTTTCCTCTCCTCAGCCAGGGGCCTAAGTCCAACCCCTCCACCC-CATA---AGGATGGGAGCCCTTTTTGGCCAGAACTCCTTCCCTAACTGTGGACAG-----TCCCCCACCTGGTATCTGGTATCTTTGGGGTGCACAGCTACAGCCACATCTCCCAGCATTGTCTCGATCCGAGTTGTTGCCACCACCACCTCCTCGTCGCTATCTGGGGTGACAGAAGGCCTTGTGGTCTTGGCCTTGGCCCCTT-------CCTGCCACTCCCAGCCCAGGA-TCCTGGTGCCCCTGG-CTCCTACCTGAGCCTTGGACCTTATAGGCAAAGGACACGAGGACCCCGAACTCCACCTTCTCCTTGTAGCCAGGCACGGAGAGCAGGGTGCGACCTGTCAGCTCCTTCTTATCCACCTGTAAAATGGGTATTTAGAGGCGTGGCCCAGGGGCCAGGGCCAGGGCCAGGG------------TAGATTGGAGATGGAGACAGGCCAGGTTGGGGGGCGCACCTCAATGTCAGAGATGGCGGAGTTGAGGGTGCAGGACCAGTTAACAAGGCGGGTACTGCGATAGATGATGCCTTCCTCGTGAAGCCGGACAAAGGCCTCTGTCACAGCTGCTGAGAGTTTCTGGGGTGGAGGAGGGAGAAGTCAGAGAGATGGGCCTTG-TGCCTGGAGGCCCAGGCAGACAC-CCAGGGC-------TCCAGTGAGGCCTTGCCCATACAGAGTCCCACTGGCCAGCACAAAGACCCCTCTGAGG---GGAGTACTTTCCTTCTTTCCTTGAGGGGGAGAGAGGACTAAGGGAACACAAGAGCAGGCAAC-AAGCCTTGTAATGCTGCAGATGGCGAGGAAGACAATCAGCTGGGGACAAGTACTGGTGCAGAGGACACTGGGAGTTCAGGCTCCATGGGAGACGGGGTCCTGATCATGTGCCATCTGGAGGAATCTGGAGCTCCCAGAGCCAAGACAGGGAACATGAAGGGCCATGATATGGAAAGGGCCATGGCGAGGGGTGGGAAGTGGCATTTGCAGCTGAGCCCTCCATGGTGTTTTACATGGGCCAG------CTCCTGAGAGAGGGCCACAACACCTCTGCTTTCTCCTGTGGGGGTCCCACCCTGGGGAGACTCCTACTCCTGCCCCAGCTTTGACACTCCTCCCACGCACAGGGTCCATGGTGAAACAGGCTCGATCCCAGTCCAAGGAGCTGCCAAGCTTCTTCAACTGGTGGTAAATCCGGTCACCTTTCCTGGAAG----CAGACAGGCTGAGGTCAGCACTCGTGCCTGGGCTAGAGGGAGACATCAGGTGGCTGACTGGGCAGTGTGGAGATCACCCATCCCCCTGAAATTTACCTGGGCCCTAGAGCCAACTGACTCTGCCTCTGTGGGAGGGTCTGACCCTGTGGCCAAGGGGTTACAGGTGACAGAGG---TCTTCTGGATAGGGGACAGGGAGGCAGGGCTGCGATGCCCACAGGGATGCTGCATACTCACTCCTCCTTCCACTTCCAGACTTCCTGTAGAAAGGCCTCGCGGCCCAGCTGGTGCCGGCTCAGTCCCTGCTCACGCCATAGCTTCTTCTCCACCACCACCTGGGTGGCAATACCTGCATGGTCACAGCCAGGGTTCCACAGGGTGGTCTCCCCACGCATGCGGTGCCTGTTAG-GGGGCATGGAGGACCAGAGGGTGAGCCAGGCCAGTGGGGCCTGGCACCAAAGAAAGCAGAGGCTTCAG-GCAAGGAGTCAGTGGACT s canFam2.chr12 4263586 1772 + 75515492 TCAAACACTCCAGAAGGCCTGGGCCCAGCTCTCTCCTACCTGGGACCCT-ACTGTCCCTAACACAAAAA-------------------------CCATCTTCTGGGCC-AGAAGGCAGTTGCAGAGGAGTTCCTAATCCAGTTTTCTCTCCTCAGCCACAGGGCTCAGT--GTCCGTCCCACCCTCATGCACAGTGTGGGAGCACCCTGCAACCAGCAC-CCCTCCCCAGCTGTGGGGAGCACTCTGCCGCACCTGGTATCTAGGATCTTTGGGGTGCACAGCTACGGCCACGTCTCCCAGCATTGTTTCAATCCGAGTTGTTGCCACCACCACCTCCTCGTCACCGTCTGGAGTGACACGCAGCCTTGTGGTCTCAGCTCCGGCCCCTTCTCACCCCCTACCCCGCCCCACCCAGGACCCCTGGCACCCCTAGCCTCCTACCTGAGCCTTGGATCTTATAGGCAAAGGAGACAAGGACCCCAAACTCCACCTTCTCCTTATAGCCAGGCACGGAGAGCAGAGTGCGACCGGTCAGCTCCTTCTTATCCACCTGTGAGGTGTGGATTAAAAGAGGTGGCCTAggggctggggctggggctggCGACGGAGAGGGCCTggggtgggggtgggggtggg---ggt--gggggCACACCTCGATGTCGGAGATGGCAGAATTGAGGGTGCAGGACCAATTGACAAGGCGGGTACTGCGGTAGATGACTCCCTCCTCATGGAGCCGGACAAAGGCCTCTGTCACAGCTGCTGAGAGTTTCTGG---GGAGCAGGGAG-AGTCAGAGGGA--GGCCTAGATGTCCAGGGATCCAGGCAGACTTGCCAAGGCAGCAGGATCTGGTGAGACCTGGGCTGCCTGGAGTCCCACCACCCATCACACAGACCCCTCTGAGGGCCGGAGGGAGTAAGTACTTTTCCTGAAGAGGAGAGAGAGCTGTGAGAGTGCAAAGGTGCCCAACAAAGCCTAAGGCCTCTGGGGATGGCAGGGAAGCCACCTGGCC-AGGACAGGGGCTGATGAGGAGAATCTTGGGAGTTTGGGCTCCACAGGAGAGTAAGGCCC-ATCATGGGCCACCAGGAAGAGTCT-GAGCTCC--------AGGTAGGTAAC-------------------AAAGGGCCGCGACAAAGGGCGAGAAGTGCTATTTGCAGCTGAGCCCTCCATGGTTCCCCACGGGTGCTGAGCTCCCCTCCTAGGGGAGGGCCACAGCACAGGTACTCTCATCCGTGGGTCAGTGGCTCTGGGGAG---------CTTGCCCCAGGCCCGAGACCCCTCCTACTCACAGGGTCCATGGTGAAACAGGCTCGATTCCAGTCCAAGGAGCTCCCAAGCTTCTTCAGCTGGTGATAAATCCGGTCCCCTTTCCTGGAAGTGGACAGACAAGCCCAGATCAGCACTCAGGCTTGGGCTGGAGGGAGACATGAG--GGCTGACGGGGCAGTATGGGGGTCACTCATCCCTCTGA------------CCCT------------------CTCTCTGTGAGGATCTGGCCCTGCAGCCCA--GGCCAGAAGCCACAGAGGGTCCCCTCTGGGCAGGGGACCGGG--------------------------CGCTGCACACTCACTCCTCTTTCCATTTCCAGACCTCCCGGAGGAAGGCCTCTCGGCCCAGCTGGTGCCGGCTCAGGCCCTGCTCACGCCACAGTTTCTTCTCCACCACCACCTGGGTGGCAATGCCTGCGTGGTCACAGCCAGGGTTCCACAGGGTGGTCTCCCCGCGCATGCGATGCCTGTTGGAAGAGCCAAGAGGATTGGA-GGTGA-CTGGGCCA-TTGGCCCTGACAACAAAGGAAGAAGGGGCTCCTGTGCACAGAGTCAATGGACT a score=2493 s hg19.chr6_ssto_hap7 3084879 94 + 4928567 GCAGGGGTGGAGCTGGAACCCTTGTGATTCTAAAGC--TAGTCAAGGAGAAAAGATTTGAAGGAAGAGCCAAGGCAATATGGAAAAAGAACAAAGA s canFam2.chr12 4265369 92 + 75515492 GAGGAGGTGGGGA-GAGATCCTCCCAGCTCTGAAATTATAGTCAGGGAGAGAAG---CACAAGGACAGCCAAGGAAATTTGACCAAAGAACAGAGA a score=6189 s hg19.chr6_ssto_hap7 3085290 245 + 4928567 AGGAGGCTCCTGCCAAACAGGATAGCAAAAGTTCTAATTGTTAAAATAAGTTACTAAACAGGAA---CAAAATAGTACCTGGAAACAGATACAAGCAAATTTAGTGTTTGTGAAAGTTGGCACTTCCTATCAGTAAAATAAGGATAAACTATTCAAAA----TGTTTGAAACAACTAGCTAATTATTTGGAAAAAATCTCCCCCTTACCAATAGTCACAAAAAGAAACTTTAGATAGATTAAAGAATTCAAg s canFam2.chr12 4265461 234 + 75515492 AGAAGCTCTCATCCAAACA-------ATAAGTTACGACATAAGAACAGAGTTACAGATTAAGAAAACAAAAACAGTGTCTGGAAACATATCTGAGCAAATTCA-TATTTGTTGTAAGTAGCATTTCCTATCAGTAGGGAAAGGACAACCTACTGAATAAATCTGTCTGGGACAATTAGCTAATTAGTT----------CCCTACTTTCCAATATTCATGAAGAAAAATTCTAGTCCAATCCATGAACTCAAC a score=8724 s hg19.chr6_ssto_hap7 3087793 441 + 4928567 acaatatttaacaaaaaaattgatacccagaaca-----------------------------------------ggtaaagaattctcaa-----aaaaaaaattaaaaaga-----aaaagaacgaagaatcaat----------------------------------------agaaaaacgg-------ggaa-----aagatagatacagacaattcacatatgggtaaacctgactggccaaaaaacatgaaaataggcacaacttcaatagcaatcagaaaggtacaaagtaaaacaacagaggta----tttttttgcccatcagattggcaaaactaattaggcaaccctaatgctcaggcttagcaagg--gtggggaaatgaacactctca-cagcaattcctggaggtatcaatcagcaaagccattctgcagggcaacttggcagcttccgtttgtacttaatataggtgtgcccctgccgacctagcagtttcacttcttgatagctacaccagcgaaacccttccacacatgctt s canFam2.chr12 4267457 490 + 75515492 ATTACTTTTTTAAAGAAAATTGTCATCTGGAATATTAGTTTATATACTTGTTAACACTGCTAACACGTCAGGGGGAGGAAcaagtgctagaataggaagaaacatttataatatacataacaaaccaaaacatcaatatccagaatattaaaggatcttccacaagccaattaaagaaaaaaaacagaatcaatagaaaaacaaagataggtacagacgattcatacacaaagaaacctgactggccaagaaacatgaaaa----------------ggtaatca--------------caaataacagaggcatcattttttttgcccttcagtttggcaaa------caaacactgataatatccagggttggaaaggacatggggaaatgaatatcctcacccgcaattcacggaggtataaattactgaagctatttgg--agaca--------------------acttaatataagcatgcccct-ccaacctagcagtttcagttcctggtag-tacaccagagaaa-tcttccacttgcactt a score=3165 s hg19.chr6_ssto_hap7 3088817 90 + 4928567 atatacagggatgtgcattagagtaaggttttcaacagaaaaaaaacaaaaaacaaaaaacagaatgaatcattaattaaaaagtgactc s canFam2.chr12 4267955 76 + 75515492 acatacaggaatgtgcattctagccagatcttcaagagaaaacaatta-------------ggaatg-accattaataggaaagtgactc a score=13733 s hg19.chr6_ssto_hap7 3089229 358 + 4928567 cactatggtacagccacactatgagatattatggaacaatta-----------------------------------------------aaaagaaggaagtcagtatgtgtggtatgtgtgtaaggacaaggaaagatctccaagagaaagtattaagtgtaagaagaaagctagatcataacaagtgtaatatgaa-ccctttatgttaaaaaatagaaaaga------ctcacccaaaaggagaactataaatttctatgggtacgtg---tatatgtaagtaaataggaaagatctgggaagatacacatcaaagtgataacaatggctaaatcttaggaggaagtaggtgtggagggggatggTCAAGGAGATTTGAAACTTTAAATTTCTTACAAGAATATATTCATAT s canFam2.chr12 4268031 414 + 75515492 ctttaaggtatagccacactattgaacgctaaggagcaatgaaacagaatgaaAaaataaataaaaaataaaataagtaaaaaataaataaaaaaaGGAAGAGAATGAAGTCAGTCTATGCATAAGAACAAGGAAGCATCTCCAAAATAAACTACTAAGTGCAA-AAAAAAGTCATGGAGTAACGTGTTTGATGTTAAGTCGTTTATGTTAAAGGACAGAAAAAAGAAAAGCCCATCCAAAATGAAAATTATAAACTACTGTGGATACACAAATTTTAAGTAAACAGACAAAAAAGACCTGGAATGACACACATAAAAGTGGTAGTAATGGCTAAATTTTGCAAGGGAGTAGGTCTACAGGGGCATAGTCAAAGAGACCTGAAGCTTTGCATTTCTTACAAAAGTATATTTACGT a score=2504 s hg19.chr6_ssto_hap7 3089771 46 + 4928567 TAATTAAATTCAAAATAATGTTATTGTTACTAGAAAAAGAAGGGAG s canFam2.chr12 4268445 46 + 75515492 TTGTTTAATTCAAAATAATGTTATTTTTCATAACAAGAGAAAGGAG a score=89221 s hg19.chr6_ssto_hap7 3089984 1879 + 4928567 AGAAGAGAGTCTGCAAGTG-GCGGTGTTGCATGGGAGTACTGGACTAGGAGAGGA---AGCTAAATGATCAGATTGGAATGAC--AGAGAGAAGTGTAGCACCACT-GGGGGCAGAAGTGAGCACCAACCCAGAAGGAGAGAGGCTCGGGGGGCT-GTCAGGGAAAAGGAG---------------AGAGCCAGACTAGGCAGAGGGAACCAGAGGAAGGTGCAGATAGAAGCTCACCATCGAGTCAGGGAGTCCTGGATGGCGTTGGTGAGTGCATGGCCCAGGTGCAGGGAGCCTGTCACATTGGGGGGTGGGATGCACATCATGAAGACACCTCGGGGATTTGCTGCTGACACATTAGGACGCTGATGGTGGAGAAGGATGGCACATGTTTAAGGCCTCAGGTCACCTCTCCCAGCCCCTCCCAGGCAACACATCCTTCAGTCCTGCCCTTCCCCACCC-CACCCACTCTGGGCCTGGGCAGCAGTGCCTACTCACCCCATACTCTGGCTTGAAGAAGCCCTGCTGCTCCCACCAAGGGTACCAGGCAGCCTCCACATACCGAGGGCTGTAGGAGTCGGGCATGGGGCCACTGACATCTGGGGGAGAGGAAGGGAGGGCTCAGTG-CCGTGGCTGGGAGCACTCTGGGAAGGAGACGTGCTGGCAGAGAGGGATCGGGATCTCCGTCACTCACATCATAGGACAGGCATTTGAGGGGCCTAGAGGCAGGGCAGGGGGTCTGCAATTCCTCACCAAACAAAGTGGTGAGAGCAAGAATAGAGCAAGATAGGGTGAAAACTTAGA-AGGGGCTGCTGAGG-GGTGAGCCCCTTCCCACTCCTAGTACCTTTCTTTTCCCCGGGTGGGGTTGGGAGGTCATAGGTAATGACCCCAGGATCCCGTTTCTCCCTCTTCTCTGGTTTTGGTTTCTTCTGCTTGGGAGGGAGAAGACATAGGCCCAGGCATCAGCCAACCCATCACCGCACACATCAACTTTCCTTCCAGCTCCACCC---TCGCCTCACCTCCCCTGGAGGTGGCTGCTGCTGTTGGATCTTCTGCTTCTGTTGGAATTTCTCTAGCTTCTCCCGTTTCTTTGCCTCTTTCTTGAGCTGAGCAGCTGTCTTTGGGAGGGCAGGAGCCTCGGGGCCTAGAGAGAGGTGCAGAAATTCAGACTCAGCCAGCTGGGGACCCTCTTGGACGGCCATACTA-GGTTTCAGATGGGGTATTTTAGATGCCCGAGGTCTTGCCCATGCTGACCTCCCCCCTCTCCCTCCTCTCCCGCAGGACCCTGCCCCAGTGATTCTGCCATTTCTAGGAAAAAAAGAAAGTGAGTTGCATGGAAGGCCCCAGGGAAGCCCCTATCCTCCAACTCCTCGCCCTTCCTCACCTGGCTGATGAGAGAGAGGCCTGGCTCCTGAGTATAGAACCACTTCTCCTAGCACGGCTCGGAATTCTGGCTGCCGGACACACGTGACAAACCAGCGAGTCACATTATTCCAGATCCGGCGGGCAGGTGGGTCTAGGACCTGGAACAG------GAAATAAATGACTCTTCTCAGTCACCCTACAGTGAGGTCTGAGGAGAGCAG-----TCTTGTTCTTCCCCAGG-CCTGGTGACTCACGTATCGGAAAGGCAGCAGCAAGGCTGTGACAGCCGCCAGGTCAGCCAGAGTGGGGGCCTCCCCGGCCAAGTAGGTGTGCAGCCGAAGCCACTCCTCCAAGGGGCTCAGGGCCCTGCCCAGGGCCCCCAGCACAGCCTGGCAGGAAGGGGAAGAAGTGTGAGACAAGGTTTGGCCCACCTCCATCTCCCACCACA------ACCCAATCCATGTGGCCTCCCTCCACCCCACTCTCACAAATCACCACCTCTGAGTCCCATTTCTTCACTCAAATAGTCACAATAAAAATACTTCT s canFam2.chr12 4268491 1764 + 75515492 ACAAGAGCGTCTACTAGTGAGGGGTGCTGGTTG------CTTGACTAGGGGAGGATATGGATGATGGATC---TGGGAAGGACGTGAGGAGAGGAGGAGCACCACCAGGGGGCAGAGCTGAGGTCCCATAAAGAAAAAAAGTG--CCGGAGGGCTGGTCAGGGGACagaagggaggagaggagtgaagaggcaaaggagacagagggaatgggtggaaga---gggcaggagCTCACCATCGGGTCAGGGAGTCCTGGATGGCATTGGTGAGTGCGTGGCCCAGGTGCAGGGAGCCTGTCACATTGGGGGGTGGGATGCACATCATGAAGACTCCCCGGGGATTTGCCGCTGACACGCTGGAACGCTGATGGGGTAGGATG--GGCACGTG-CTAAGGCCTCACATCACCTC-CTGGCCCCCTCCCAGGCAGTGTGTCCTTCGGCCCTGTTGTTGTCCTCCCATATCTCCCCTGGGCCTGGGCAGCAGAGC--ACTCACTCCATACTCGGGCTGGAAGAAGCCCTGCTGCTCCCACCATGGGTACCAGGCAGCTTCCACATACTGAGGGCTGTAGGAGTCGGGCATGGTGCCACTGACATCTGGGGGAGAGACGGGGAGGGGGCAGTGTCTGAGACTGGGAGCA-----------------GCCGG---------------------------------------------------------------------GGGGCTGTGCAAATCCTC-CAAAGCCAAGTGG---AAGCAAGGGCAGTGCAGGAAGGGACAATGCCAAAGACAGCAGCAGCTAAGGAGGGGGGTCCCTTCCCGCCTCTCATACCTTTCTTTTCCCCAGCTGGGGTTGGGAGGTCATATGTAATGACCCCAGGATCCCGTTTTCCCCTCTTCTCTGGTTTTGGTTTCTTCTGCTTGGGAGGGAAAAGATAGAGGCAGGGAGGTCATCC-ACCCACTGGGGCAC----CAA----CCTTCTAGTTTTCCCCGTAGCTTCTCACCTCCGCCGGCGGTGGCTGCTGCTGTTGTGTCTTCTGCTTCTGCTGGAATTTCTCTAGCTTCTCCCGTTTCTTTGCCTCCTTTTTGAGTTGAGAGGCCGTCTTTGGGGGTGCAGGGACCTCGGGGCCTGGACAGAGGCACAGAAACGCCAGCTTAGCCCATTGGGGATCCTCTGTGA--ACCATACTACTGTTTCATTCGGGCCATTCCAGCGGCCCAAGGGCTC-CCCATGCTGGCCTCCCCCC---CACCCCCCACCCTCAGGGTCCTTCCCTAGCGATTCTGTC--------------AGGAACATGAGCCCCACAGAAGG-TCCAGAGGAATGCCTCCCCTTCTCCTCCCTAACCCTCCTCACCTGGCTGTTGAGAGAGGAGTCTGGCCCCTGAGTACAGAACCACCTCTCCCAGCACTGCCCGGAATTCTGGCTGCTGGACACATGTGGTAAACCAGCGAGTCACATTACCCCAGATCCGGCGGGCAGAAGGGTCCAGGACCTGCGACGGTGAAAAGAAATAA---AATATCCTTAATCACCTTAGAGTGAGGTCTGATGGGAGCTGCACGTCCCCATTCTTCTCCAGGCCCCTGTGACTCACGTAACGGAAAGGCAGGAGCAAGGCCGTGACAGCTGCCAGGTCAGCCAGTGTGGGGGCCTCCCCAGCCAGGTAGGTGTGCAGCCGAAGCCACTCTTCCAAGGGGCTCAGGGCCCTGCCCAGGGCCCCCAGGGCAGCCTATGGGGAAAGGGAAGGGGTAAGGGACTAGGCTTGGCCCACCTCATTTCCCCATCCCGTAACCCACTCAATCCACGAGTCCT--------TCCGCTCCCAAAAATCACCACCTCTGAGGC-------------CAAATGGTCATAATAAAAATATTtcc a score=7952 s hg19.chr6_ssto_hap7 3092120 282 + 4928567 ACTCATCCAACAAATCCCTACTCAATACT---TATGTGTTAGATGCAATATGTTAAGCA-TAGAAG-TAAAGATTATATGAGGCATCTCAATAACTGCCAGGTTCAGAA--CATCAATAAAtatgtatt-------aagtacttctccagggaatgagaggaaaacacgaacagatggacagaaccctgacctgg----------tagagttaacattcttgtagggga-acaacaaatgagcaaatataaaatgaagtgccctatttttct---taactcctatgaagaaaaataaagcagaatgaggg s canFam2.chr12 4270255 292 + 75515492 atttgttcaacagattcctgctgcacacttactatgtgtcacatg-aatatgttaagcaccagaagttaaagactgcatgaggcaacacagttattgcc---tccagaggtgtttattaagcacctactacaggccaggcacttctctaaggaatgtggag-----acaagcag---------accctgactcgtgttcacactccagtgtttacacttcagcgggggagacgataaatgcgcaaatatagagtacatcaccctatttttctctgtaagtgctgtgaagaaaaacaaatcaggctgaggg a score=19312 s hg19.chr6_ssto_hap7 3092728 840 + 4928567 AAACAGGGAATTCCAGAAGAGAGGGACTCTATTTTATTTGTTTGTTTGGACAGACATTCTGAATGCAAGGACTCTATTGTAGATAGGGTGATCACAATATGAGGGAGCAAGTCAGGGT-------------------CTGCCA----------------------CATTCATTCATCCATTCAAGAAATACTAATTTTCCATCATGTGCTCAATACCATGCAAGGAGGCAGAG---TTGAAAGTACACCAAGGCACAGGTCTCCTTTGGAAGGACTGATAGTTACAATCTGGCAGGGTTATCTCTCCTCTCACTTACCTTCCTCATTTCATTTCTCTTTTATCTCCTCCCAGCA-ATTGTCATCTCTCCCTCACCCAGTCTTTTCCTACAATTCAAATAACTTCTATCCTCATCAATTTCAGACTCATCAaacttttactaagagactttaaaagtgcctggcactaaactatgtgctctgcgcacatcttttaatcctattaactcagtgaggcaagcattacatcaacttg----cctgcgtgttcatagacataggaagaccaagacacagcgggtctatgaaacgtgcccagggttaccataccagttggcaatctgggatttgaTCACTCTTTTCCCACATCTGATGTACTACCTTCT-TGTCTCATTGTCCATTCCAGTCCTCGCTTCCCTCCTCTGAATTTCTCCCCTCCCCCTCTTCTGTACAACCCCCTCACCTGGGGGTCCTGGGCCGAGCTTCGGAGTCCCAGGGCCGGCAGCGTTGCTCCACAGGCAGCTGGTATTAACTCCGTGTCGGCGTAACTGACCCACTGTTGGACAAGGACAGCCGCCCGGCTGCCCCCTGGGCCCCCCAGGCCTGCTGGCC s canFam2.chr12 4270547 752 + 75515492 agatgaggcatTCC---AGAGAGGGGCC-------------------------------------------CTCTATGGTAGGCGGTGTAAGTAGGACATGAGGGAGCAAGCCAGGGTGTAAACCAGGGattcattgctttcattcattcattcattcattcattcattcattcattcattcaAAGAATACTAACGATCCACCATGTGCTCAAAACTGTGCAAGGAGGTGATGGTTCTGGAAGtgcctcaacctgca---ctc-------------aaccgcctcaacctgcTAGCGCACTCTCTGCTCTC-----CCTGCC---------TTCTCCTCCATC----CCCAGCACCCCGCCACTCCTCCCTCCCTCAA------CCCACTAGGC-AGTAACCTCCACCTCCGCTGCCTTCC-ACTCCTCGA--TTCTCCTCCCAGACTCTAGAA-CCCCGAGCACCAG--TCGGCGCTCCGCACAGCTCTTCTCAT--------CTCAGCGTG--------TTCCTCAACAGGAAAACTTCCACTTTCCAAGAC----GAAGACCAAGGC------TATTTAAGAGACCTGCCGA-GGTTATCACTGCAGATGACCACCGGGGATTTGCTCAGAGTCTCTCCACGCCTGGCCCGCGCCCTTCCGGGGCTCCTTACCCCTT------CTCATCTTCTTCTTCTGCATTT--------CCCCTCCTCCGT----CCCGCTCACCTGGGGGTCCTGGGCAGCGCTCCGGAGTCCCAAGGCGGGCAGCGTTGCTCCGCAGGCGGCCGGTATCAGCTCCGTGTCGGCGTAGCTGACCCACTGTTGGACCAGCAcggcggcccggctccccccggggccccccaggcccgccggcc a score=3538 s hg19.chr6_ssto_hap7 3158074 90 + 4928567 TCTCAAGCCTCCCAGCACTTCTGTTTCTAACAGGTAGTAGTTCATGGGTCAGACATTCATAGTGTCCTTTCCTTTTTGTCTTCCACTATT s canFam2.chr12 4323016 80 + 75515492 TCACAAGCCTTCTGCCACCTCTG--------ACACAGTAGCTCATGAGTCAGACATTCATGGTATAATTTCCTCTT--TTCTCCAGTATT a score=7440 s hg19.chr6_ssto_hap7 3158173 217 + 4928567 TTTTTTTTTTGAGCAAG--------GGCTCTCCCACTTACCTGCAGGCTGAACAGATTCTTTTCATAAGCATCTGCCTGGGGA-----ATATTTTCTTACATAATTTGCCATAGGAAGTGCTCACTTCTCTGTCAGGCTAGC-TGGGACAGGATTCCCATCTGCATTTCACACACTTGCACCCTATTTCATGGAGGATGGTATCCTACCCCATGTTAGAAATATAAAACAG s canFam2.chr12 4325879 203 + 75515492 TTTTCTTTCCAAACAGGAAAGCTACGGCTTTCCCACTCATCTGTAGGCTGCCCA--TCCTCTTCATA-GCATCTGCCTTAGGATAGTGCTATTTGCTCACATA---------------CGCTTATTTTTCTGCCATGTTGGCCTGGGAGAGGCTTCCCATGTGCATTTCACGCACCTGCGCCCTGCATCACAGAGGA----------CTCCATCTCAGCAATACAAAACAG a score=3292 s hg19.chr6_ssto_hap7 3159185 72 + 4928567 CTTATGGCACTCCCTTCATACTCATTACACCTGTGAAGATCAACCTGTTTCTCGGTGATAAGAAGGAATGTA s canFam2.chr12 4326101 71 + 75515492 CTTGGGGCTCCCCCTGC-CACTCATTACATCTATGAAATTGAATCTGTTTTTCTGTGATAAAGAAGAGGGTA a score=102487 s hg19.chr6_ssto_hap7 3159578 2125 + 4928567 AAAAGGAAAAGAGGATTTGATTTGCCAAAGTCAGATTTTCACAGGCAGTACGCACATCAGGTCTCTCCCCAGAACTCACCCAGGCTCAC--AAGGATACATGAGGAAAACAGACACGAAGATGTGCATTGACAGAACCATAGAGACTCTACAAATATTCATTATCCTTCATTAAAAAT-TTTAAGTTACAAACATTTTGATTGATAGTCAGTCA----TGGTGGTGCACCTAGTCCTT-ACTCTGAAACCAAATATCCTGCCATCTGGGGACTTTCACCAGCCCTGTCGGT------TATCTTACCGCAACACCAAAGAGGAGGCTCAGCCTTCCCCAGTTCCCTGAGTTCACATTGATTCAATTCTACAG--CTCACTAGACCTGCCCAAG-ACAGGACCAATCAATGTCCCGGGAGGGCAGAGAGGGTGGTGGGGCCACACTTAGCCAT-ATG-GAAAGACAGTATTCTCAGATGAGGGCAGGACTTTTT-TGTGGGAGAGGACGCCTAGCTTTCAGTCCTAAAGGAAGTGATTTCCCTGGTAAAGGGAAGGTGATTTTGCCA-AGGCTGGAGTCTAAAGGAAGATGGAACTGTCTTTCAGGCGTCTCCAGCAGACCCTCTACAGACCCGTGTTCCTGAAGGCAGAGTCCTGAAGGCAGAATACCCCTGTGGCAGTGGCACAGCTCAGAGTGTCCCATAGACACTGATTTTGGCCACGGAGATGCTCTCTGTGTAGTGGTTCCGGCCTTTCTCATACAGGACGTAGAGCTGGGGGGCCTGCTCCTCTCCATCCATGCTGCCCTCCAGGGTTGCCAGGGATGAATAGCCACTGGGGCCTGGCCATAGCTGGACTGTCTCTTTCCGCCATGAGGTACCATTGCTGAAGCTCCATCGCAGGGTCAGGTTCACTCCTGGGGAGAGCAGGAGAGTCAGGGAGAGAGGGTCTCTGCCCAGGCCTTGTCTAGAC-ACAGGGCTCT---------CCCTGCTGACCCCACCCATGAGGCACTCACGGAACTCTGGATGTGCTGGGTTGGAGAAGAAGACAATGCCGGAGCTGGTGACTACAGCTCCTGCAGCTACCACAGGGTCCACGAGCTCAGGGTCGAAGGTCACATCACGGGGCCTTAGTGTATCACAGGCATCATAGCTGCGGAGGACAATTCGGCAGTGGCAGTGGTAGTTGTTCTGGTTTCGGGCATTGATGACGACTGAGCCATCTGGGAGCTCATAGGGCTGAGGGGAGAGGACAGGACCTCAGGGAGGGAACAGGGA-----------AAATGCCCTGTCCCCGAGGGGAGCAAGGGTGTGTGGCACTGAGTGGAGCAGTCAGACCCTGGGTCTGTGCGTGAAATGATGTTCTGGAGGGCAGGGAGGGTCAAATGGGTAGGGAACATCTCATGGACTCCTGACCTGGCATTCATCAGGATTGAAATCATTTTCCTGCTTGGGCTGACCGTAGGGGATGCCGCTGACCCCACTTCCGTAGCGCCAGGAGGCACCATGATCATCGCTGAGGAGACAGAAGACTCCGTCCCGCTCCAGCGTCCCATGGCCACACACGATGAGGCGGCCCTTCCGTGGCTCCCGCTGTTTCTGTGGGAAAGGGAACTGGGTGTCACAGAAGGAGACTC--TAGGGGCTCAGAGGCAGGGACAGAGAACCCACCACTTCCCAAATGCAATCACATGTATGGTCCCCTTGAGTTCAGCCCTTGCTCACTGAGGGTTCCAGTCAGATCCCATAAATACACACCCTGTTTGAATTAAG------------------------------------AAGCTCTCCCAGGGtgtacag--------ctggaca---tgtgcaccag-----gggcccagccaca-gggtgcatgagagcttaaacccaacctgtgctcactcgccaagctgtgcaccctggcacaggcttgtgtctgtccaaag-aggcagtgcctttttctactttgcatgagggtattgcatggactaacgCAGTCCTGTTGACAATGCCA-AATGGGAAGCCAATGGCAGAGTTCCCTCTTCTCCTGATAATGTGTTCCTACCAGGATG-CCCTGTCTTTCAAGGAATCCCACCCAAGCCAGAAAATCTGACTTCAGAGAATCTTCCCCTTGGAAAGGAGTCCATTTGGGGGTATCCCTCAGACTCTCCACAAGGCAGCCCCCTCCACCTATCT-----------CCTAG s canFam2.chr12 4326172 2150 + 75515492 AAAGGGAAAGGAGGATTCAATTTGCTA------------CATGAGCAATAAATGCACCAGCTTCTTCCTCAAAACTCTTCCCTGGCCACTTAAAAGTGCACACGCAGAACAGACACAAAGATGCACATTAACACAATCACACAGACTGTACAAATGCTCCTCCTCCTTCATTAAAAATGTTTAAGTTACAAATATTTCGATTTATAAATAGTCAAGGTGGGTGGTGCACCTAGTTCTTTACCCTGAATCCAAATAT--TGCCCTTCCAGGACTTTCACCAACCCGCTCCATAGCTAGTATCTTACC------CTGGAGAGGAAGCTCAGCCTTCTCCAACTCCCTGAGTTCACATTTATTCAATTCTACAGGCCTGCCTAGCCCTGCCTAAACAAAGGACCAATCATCACCCCAGGAAGGCAGAAGGGGTAG-GGGGCCAGAGCCAGCAATGATGTGCAGGGAAGCACTCTAGAGTGAGGGCAGGACTTCCTGTGTGC---AGGAAGCCAGAGTTGCAGTCCTAACAGA-GTGA-----------AAGAGAAACTGGCTTTGCAAGAGGCTAGAGTCTCAAGGAAGATGGAACTGTCTTTTAGGGATCTCTAGCAGATCCTCCATGGGCCCAGGGTCCTGAGGACAATGTCC---AGGCCTCCCACTTTGGTGGCAGGTGTACAGCTCAGAGTGTGCCATAGACACTGACTTTGGCCAGGGAAATGCTCTCTGTGTACTGGTTCCGGCCTTTCTCATACAGGACGTAGAGCTGGGGGGCCTGGTCCTTCCCCCCAACACTGCCCTCCAGGGCAGCCAGTGAGGAGTAGCCACTGGGGCCTGGCCACAGCTGGACTGTCTCCTTCCGCCACGAGGTACCATTACTGAAGCTCCAGCGCAGGGTCAGGTTCACTCCTGCAGAGGGT-GGAGAATTGGGGAGGGAGGGGTTCTGGCCAGGCCGGCTCCAGACCACAGGGCCTCACGCCCCACCCCCACCCTCCCCACCCCC-CGACACTCACGGAATTCTGGGTGGGCTGGATTGGAGAAGAAGACAAGGCCGGAGCCGGTGGCTACAGCCCCAGCAGCCACCACAGGATCTACCAGCTCAGGGTCAAAGGTCACGTCTCGAGGCCGGATCGTGTCACAGGCATCGTAGCTGCGGAGGACGATTCGGCAGTGGCAGTGGTAGTTGTTCTGGTTGCGGGCGTTGATGACGACTGAGCCATCTGGGAGCTCATAGGGCTAAGGAGAGAGAACAAGGCTTTAGG-AGGTCCCAGAGAGAGGCAGCGCCAAGGACCCCGCCCCTGAGG--ACGCAGGCTGGACGGCACAGGGTGG-GCAGCCCGATCCTGGGTCCAGGGGTGCGATGGCGC-CTGGGGGGCCGGGCGCGGGGACTGGGTTGGGGCGGCCC--TGGGCTCCTGACCTGGCACTCGTCAGGGTTGAAATCGTTCTCCCGCTTGGGCTGGCCATACGGGATGCCGCTGACGCCGCTACCATACCGCCAGGAGGCGCCGTGGTCATCACTGAGGAGGCAGAAGACCCCGTCCCGCTCCAGCGTCCCATGGCCACACACGATGAGGCGGCCCTTCCGCGGATCGTGCCGCTTCTGGGGGGAAGGAAGCTGGGTGTCACTGAGGGAGATACAGCAGGGGCTCGTGAGCAGGGCAGGGGAGCCTGTCACCTCCTAAGTGTGAGAACACATCTGGCTCCCTTCAGTCCTGTCCTGGCTGA---------------AGATCCCACAAACCCCCAC--TGCCTAAATGAAGGAGCTTATTCATGAAAGCGCTCCCTAAGCGCAGAATAAGCTCCTTCAGGACATGCAGGGTATTCACTGGATaggctgtgcacaagacaaggggtccagccacatgggtgcatgggagcttag--ccaa---------gctcaccaagctgtgccccttggcacgggcttgtgtctgctcagaggaaggggtgcctttttccagcctgcacg--ggtgccacaagaaacagcatggccctACTGACAACCCCCCAATGGGAAGGCAAGGGCAACATTCCACCTTCCCTTGGCA------TCCTCCCAGGATGTCCCTTTCTTCCAAGGGATCCCATCTAAGCAAGAA--CCTGACCTCACAAGACCTTCTCCCTGGGAAGAAGTCCAACTAGGGGCATCTCCCAGACTCTCCAAAAGGCAGCCTCCTCCTCCCTTCTTAGGACAGAGACCTAg a score=26924 s hg19.chr6_ssto_hap7 3161703 400 + 4928567 GACAGAGACCTGAATACCAGAGCCCGGTCCAGGGGCAAACACTTCAGTGCCAATATCCAGGGAGAGATTCCGGGGTGTGCTCCAGGAAACACCATCATCCTTGCTCCATACCAACATGGTAGAGGCCACCTGGCAGCCGGCCTTGTGAGCACAAAGGGAGTAGAAAAGAAATACTACTCCTGTCTCAACATCGCTCACTACTGCCCCAAGGTTCAGCCCATCGGGGACATCCCCATCATTGACAATGAACGCTGTAGGAGACCATGTGCTGCCTGAAAAAAATTGGAGGAAGAAACCCAGAGTGAGCACTCTGCAGGTACCCTTTCTA-CCACTTCCCGTTAATTTCCCACCTTCTGCTAGGGACCTCAGGCCTTCCGATGGTCCCAGGGTGCAATCCAAC s canFam2.chr12 4328537 399 + 75515492 GATAGAGACCTGAATGCCAGAGCCTGGTCCAGGGGCAAACATCTCAGTGCCGATATCCAAGGAGAGATTCCGAGGTGGGCTCCAGGAAACACCATCATCTTTGCTCCACACCAACATGGTGGAGGCCACCTGGCAGCCAGCCTTGTGAGCACAGAGGGAATAGAAAAGGAATACCACTCCCGTCTCCATATCGCTCACCACTGCCCCAAGGTTCAGCCCATCTGGGGTCTCCCCATCATTTACGATGAAGGCTGTTGGAGACCACGTGCTGCCTGAAGAAAAAAAGAG-AAGAAATCCAGGGTGAGTGCTCCAAAGGTGCCCTGTATAACCACTCTTTGTTAATTTCT-ACCTCTTGCtagggacccaaggccttagagtggcctcaaggccctaccagac a score=5934 s hg19.chr6_ssto_hap7 3162103 272 + 4928567 ACTTGcac---------------------------------------tatctatacctctt-------------------------------------------gtcctgttttatttttctccattgcatttatcaccttgcaacagacaaaa-aagtttacttgtttattatgcttg---tctgtctccttccagtacaatttaaatcctg--agggcagaga-tttttgatctgttttgttcgtggctatattcatgaaacctaaaatagtgcctggtataggtatatagtacccaataaatgtttgctaagtgaa----tgTCCAACTCCTTGGTGATCCCAATTTCCAGATCACTGTCCT s canFam2.chr12 4329037 351 + 75515492 acctgcacaggcttgtgacatctgcctgctacattgttcctcagggttattctcacctccttgcctcaaaagtcatctatttaaagttgcagccaatctccagcaccctgttttgtttatctctgttatattgatcactttccaacacaaaaaccaaatttacct----attatgtttactatctgtctccccacag-acaatataagccccacaagggcagggagtttttggtctgccttattcacaactgtagtcacggaatcttgaactatatcatgt---------tagtatataacaagtgttcaaaaaaAAAAAAAGTATTCAACTCCTAGGTGATCACAATTTCTAGATTACTTTCCT a score=42639 s hg19.chr6_ssto_hap7 3162375 1371 + 4928567 AGACACTTGCCCTTCTCGGGTTCCCTCTACCCCTCAGGGACTCAGGCAACCAACCCTCTAAGT-----TCCCCTATCCTCAGGGCCCTTGGGCTCATTGGGCTGCCCACCCATCCAACCTAGCACCGGCT-CTTTCACCCAGACATCTTTATACCCTGGTCCATGGACCTCCGCAGGGCGATGAACTTGGCCCCCTCATCGGATGAGGACATTTTCCTCGCCTCAGCAAAGGCGAGAAGAGTGCCCCGCGGAGTGGCTGTGATGAGCGGGATGCGGAAGGTGTCCACTGAGCCGATCTGTCTCCCGCTCACCCACAGCAGTTGCTCCATGGTCACCAGCGGCTGCACCTGTCAT----GGGAGGAGGAAGGGTCAACAAAGACAAACTTGTCTTGGG------GGTTTTAGGAA-------------CCCACGTTCCGATGGGAGAGGGAGGATCTAATGGGGATCCCGAGTAGGGGATGGGGTC--CCAGAACAAGAAAGAGGAACACGAAGGGGAGTTTGGAGCGAAGCTGGAGGCTCGGAGCAGGGGAGGGTCTACGAAAGGAGAAGGCGCCTTCAGGGAGGGAAGG-----GGACCCCAAAAGAGGAAGGGGCTCGAATGAgg----------------------------------agaaggacggggacccggagagggagaggggctgggagcggtaggaggaaacggggtctgggagaaagaaaaggGTCCTGTCGCGGAAAGTCGGCTCAGCCGCCCGCGTTCCGGGGGACACTAGGTGTCGATCACCTGCGCGGGTCGGGGATGGGGCTATGCAAAGGGTGACTCACCAGACCGAAGTCGTTCTCAGCCTTGGACCAGGAGGCTGCCAGAG---ACAGCAGCAGGAAGATCGCGGCAAACACCCAAACCCTACAGCCTCCCCAGAAGCCCAGAATCCGCGGCCCCCAGCGTCTGTCCGGGAGCGCCGTGCTGGGTCGCTCCCCAGTCATCTCTCCCCGCAGCTGCCGCGACC-----CTGGCAGCTAGACTCCACAGAGTCGGGA---GTCAGCTGACCCGGACCCTTTAAAGCGCAGATGTCACCCT--TAAGCCCGCCCCGGTCTGGAGGCCCC----GCCGCGCTTCCCGGACTCTAATTGGTCTTCAAGTAGCTCATCTCCTCCCACGTGATCACGCAGCATCTCGAAGCTTGCCCTTCCGATTggccctcttggaggccctcttggaggcccGGAGCGCGTGACCCGAACGGGAAGCGGACTGGCTGGGGTGAAGAAGGGACTGGCACCATCCTTATTGGGCTTTTTGATTGGCCGCGGCACCAGGACACGTCACAGGGGCGGGGCCGATTTTAAAGAGCCGGGC-GCGGAAAAAAAAAGGCCGCCTGTCGTCGTGGAGAGAATGA---GTCACAGATTTACTGAGTTAACAAAATATC----TTTAATAA s canFam2.chr12 4329573 1379 + 75515492 AATTACTTGCC-TCCTTAAGTCCCCTCTGCCCCTCAAGGAC-CAGGCCTCCAGCCCTCCCAGTGGTTCTATACCATCCTCAGGGCCCGCGGGCAGATCAAGCTCCCCACTCACACGACCTAACACCAGCCACTGCCACCCAGTTGTCCTTATACCCTCGTCAGTGGATCTCCGGAGAGCGATGAACTTGGCCCCTTCATCCGACGTGGACATTTTCCTCGCCTCGGCGAAGGCAAGGAGCGTACCCCGAGGAGTGGCCGTAATGAGCGGGATTCGGAAGGTGTGCACATTACCGATCTGCCTGCCGCTCACCCACAGCAGCTGCTCCATGGTGACCAGCGGCTGCACCTGCCAACGGAGGAAGGAAGGAGGGTCAGCG--GACGAACGAGGCCGGAGACTTCGGGCTTTAGGAAAAGTAAGGGTGGTTCGGAGTTTCCCTGGGAAGGGCAAGAT---GCGGGGGCTCAGAGCGGGGGTGGGGGGCACCCAGAATAAGGAAGGGCACC--GGAGGAGAGTTGGCTGCCAAGCTGGGGGCTCGGAGCGGGGAGAG--CGACGAGGGGAGGAGGCGCCTCTGGGCGGCGGGGGCTGGCGGCCCACCGACGGGGAAGGAGCTCCAACGGAGGGGGCTCggctggcaggggctggcaggggctggcaggggcACGAAGGCCGGGAGAAGGCG--GGGTTGGCAGTGGACGGAGGG--CGGGGCCCGGGGGCGGGA----GGCTCCCTCG-GGAGAGGGGACTCGGGGGACGCTGTCCCGGGGGTC-CTGCGCCTGAACGACCCGCGTGGGCCGGGGACGGGGACACATGCGGGGCCACTCACCAGACTGAAGTCGTTCTTTATCCCCGCGCCCAACCCGGCCAGCGGCCACAGCAGCAGGAAGGTCGCGGCGCGTGCCCGAACCCGCCAGCCGCCCCAGCAccccggcacccgcgggcccccgggtctgcccgggagcgcggcgccgggccgACCCGCCATCGCCCC-CTCCTCGGCCGCCGGGACCGGGCGCCCACGGCGAGACT----GGGGCTGCGGCGCGTCAGCGGACCAGG--CCCTTGGCTCGcccgccccgccccgccccgctcgccccgccccgAGGCCGCCCGCGGCCCCACTTCCGCGACCCGGATGGGCCCCGCA--CGCTCAGACCC-CGCACGTGATCCTTCCGC--CCTGGAGCGGGGCCTTCCAGTTGGTTCCTTTCGAAGCCCC------------GAGCCCAGGCCCCAGACTGGAAGCTGACTGGGTGGGACCGAG----GGCCGGCGCC-------CTGGGATGTTGTAT--------------------------GGGGCGGGGCCTCTCTTAAAGAGCCAGGCCGCGGAAAAGA----GCTGCAAGTCGTCGTGGAGAAAATCAAAGGTCTCGGACTT-TTGAGAAAACAAAATATCCACCTTTAATAA a score=16035 s hg19.chr6_ssto_hap7 3164056 468 + 4928567 TTTTTTTA---CCACAAAATGGAGACCTGTAAGGCGAAGTGAGGTTGGATGGCTGGACGGTGGGGGTGGGGTGCAGTCCTGGATCAGGGCCGGAGCTGTCACTTCTTCCTCTTCTTGTTGTCCGGGGGCGCCTCGTTCTTCTTGCCCAGAATCTTTAGAAGGCTCTTGGACATGTAGTAGGGCCGGTCCAGGGAGCCGTTGTTCCGCTCCAGGTCTTCCACTGAGCCGCAACAGAGACCGGTTAGAGCGGACCCTGGGG------------CCAGGAAATCGGggactgggaggcaagctgcctgcgggatttggaatccaagctgcaccaccacccttacccccgggcaggttatgtaatctcagtttcctc-ctgtgaagtggggtcgggaatattatgttgcatagagcgatgataagaattagcggaaaaaatgcatgtcagtcgctta-----------ggaggagactggcaAACCCTGAATGGATGCA s canFam2.chr12 4330952 439 + 75515492 TTTTCTTAAAACTACGAAATCGAAATCTAGAGGGCGGGGTGCGGCTCGGAGGC-----GGTGCAGGAGGGGTGCTGCCCTGGGTCGGG--CGCGTCTCTCACTTCTTCCTCTTCTTGTGCCCCGGGAGGGCCTCGTTCTTCTTGCTTAGGATCTTGAGAAGGGTTTTGGACATGTAGTAGGGCCGGTCCGCCGAGCCGTCGTTCCTCTCCAGGTCTTCCACTGAGCCGCAACAG-GACCG-TTAGAGCGGACCCCGGGGAGGGGGGGAGTCCCGGGAGAGTCGGGGAGGCCGGGCAGGCCGCCTG--------------------GCACC-----------CACTGGGCGGGCTGCGCAACCTCAGTGTCTCCTCGGTAAACTGAGGCCAGCA--------TTTCATAGCG---TGATAGGGCTTAATGGAAAC--TGCATGCCGACCGCCTACTGCCGACTGCGGTGCATACT---AAACCCTGCATGCGTGTA a score=3216 s hg19.chr6_ssto_hap7 3164530 49 + 4928567 AGAGTAAGAAAATCCCCTGCCGCTACAGCCACCTGCTGGGAAGTCTCTC s canFam2.chr12 4331660 49 + 75515492 AGGGTGAGACAATCCCCACTCACTACAGCCACCTGCTGGGAAGGCTCTT a score=99986 s hg19.chr6_ssto_hap7 3164904 2130 + 4928567 ATGGCTAACTTCTACCCGAGATTTCTTAGGGAA-GATAGCAGAGACCTCTCCATCAGAATGCTCCTTCTTTGGAGAGCCTACCGGCCTGGGGGCTCACTCTCTTCCTTCTTCCCTAAACGCCTGGCCTCAGGATGTCACAAGAAGCTCCCTCTGGTTCGTTTAGCTCACAAAGGCATTGTTTCTAGAAGCACCAAATCTCCAAAAAAAAAAAAAAATGCTTGAACGGCTCAGTACTTTAAGGTTGGGGACAGGTGGCTGGGGGTGTCACTCACGGAAGCAGAGGAAGAGCGTGTCCACACACATGCCGAAAACGCTGAAGAAGCCGCTGGCGATGACATAGGCCCCCAGGATGGAGGTCTGGAAGACATGACCCGTTGGGGTTATTGGGTTCCTCTGGGGAGTTGGGGGTGGAGCAGCAGAGA-GGGGAGTCACTCACCATGATGGGCAGCCAGTAATAGTTGAGGTGGGGGCTCTTAAAGTCTTTACCCAGCCCCGGGATGCGACCGGAGAAAAAAAAGAAGGACAGGACCCCTGTGGAATAATTCTGGGGGTTAGTG---CTGCACCTCTGAGGCCACCTCTTCAGCTGCCCAGCACCCCTACCCTCTGTCCCCACAGCTTCTGGTCC-----CTTACCCACGCCTCCGACCACCAGCAGCTTCCCAAAGAACAGCAGCAGGTCTGTGACTTTGTCCAGGACGACCACCCTGTGCCAGAAGTTAGGGCAGGTTGAGGGTGAGAGGCCTGGCAATGCTGAGAGTGAAattggcttcgtaatttgtggggactggtgcaaaatgaaaattgttcacgtttcaagatggcaagagcagagcactaaactaagtctagggcccgactgagcacagCACACCCACGAAGCCAGCCTTGGGTGGGAGATCAGAGGAGGGAGCCACAAAGCGGGGGGGGAGCAGCCTAACCTGACAATGTTTCGCATGAGTAGCATGAACGCATTTTTGGCTGAGACACAGAAATTCTTCCCGTAGATGGCGATCTGAGGGAGGTGGAAAGGTCAGAGTTACCAAGGCGAGCTGCCTGGACCAGGATGGGGGTGTCTAGACCAAAGGGCACCAGAACAAAGGGTTGCTTG--CAGTGTAGCTCACCATGATGTATGCATTGCGGTTTAGGAACTTGATAAATTTTTCCAGACACCAGAGGCAGCACTTGAAACAGCACATGATGCAGCGGGCTACAGGGTTCTGCACTCCTGGGAGCGAGGAAGG--CTCATGTTTGGTCACTGCCCCTCCCTAATGGCCTTCCCCAGCTCCTGACTCCTACTCCGACTCCAG--ACTCACCTCTGAGCTTGTGGTCAATATACTCCAAGATGACCCGGGCTATCTGCACAAGGGTCAGGATGAGGGCTCCAAATGCCAATGACCCAGTGTGGTAACTGCAGAGGGTGTTA------------TGCAGTCAGAGACAGCTCCAGGACCCCTGGGGCCCCCGTGCCTACAATGACCAGGCCCCT-GCCCCATCCTTACCGGAGTGTGCGGATGAAGGCAGAGATTAAGGGGAAGGTAGGGATGTCCTGGGGCTTGTGGAAGGCCCAGTAGAAGGAGGCAAAGGCTCCAGCGAGGACGCATTGGCCCAGGGCCAGTACCCAGTTAAGGGTCCAGAAGAGCCCCAGGACCCCATAGATTTGCAGATTGAAGACAGAACGTTGGATTAGGCCTTTGGATGAGTAGCCCTGGAAGACGCACATCAGCCCTGGGCACGAGGAGTTCACAAGGTGGGCCTGGGAGGGTAGACGGGGATAGAGTAGGCTCAGGCATCGGGGGCCTCAGTATGGAGCCTGGGCGTCCCATTCCCAGT-AGCTCCTGCCCCTCCCAGAGTTGACAGGTGGGAAGTAGCTTCTCTGGACTGCGGGAATCAAGTTCTGTCGGAGAGTTCCATCTCCAGGCTCAAACTCAGTTTGGTCTGCCTATAGCATAAGCATAATCAGCTCCCT--------------------------------------------CAGTCTCAAT----CAGAGGGGAA--------------------------GGCACTCACTCAGCATTCCCATTCCAGAGCAGCCTCTGCAACGTCTACCAAAACCCTTTCCggcaaat-tgaacaggctgggtatttgatgatattaaggaattattgttaattttgtgagatgtgataatgatatagtggctatgctttt s canFam2.chr12 4331709 2098 + 75515492 GTGGCTAACTTGTACCTTCTATTTTCTAGGGAAAGGTCCCAGAGGGCTTTGCGCTGAAATGCTCTTTCTTGGGAGATCCTGCCAGTCTGGCACCTCATTTCCTCCTTTCTTCTGTAAATCCCTGGTTTGAGGATGGCAGAGGAGGCTTCCTCTGACT---TTGGCTC----------------------CTTTAACTCCC-----------AAAAACCCCTAAACAATCTGGTACCTTGAAATGTGGGGGAAGTGGTAGGGAGT-TCACTCACAGAAACAGAGGAAGAGTGTGTCCACACACATGCCAAAAACACTGAAGAAGCCGCTGGCGATGACATAGGCCCCCAGGATGGAGACCTGGAAGACACAG------GGCGCCTTAGAGTTCCTTTCTGGGGTTGGC--TTGTGAGGCAGAGCCGGGGAGTCACTCACCATGATGGGCAGCCAGTAGTAGTTGAGGGCGGGGTTTTCAAAGTGTCTACCCAGCCCCTGGATGCGACCGGTGAAAAAAAAAAAGGACAGGACCCCTGTGGGAGAGGCGTCAAGGTCAGTGTCACCACTACTCTGTGGTCACCTCTTCCAATGCCTTGTGCCTCTGCCCTCTGTCCCCGTAACTCCCAGCCCTGGCCCTTACCAACACCTCCAACCACCAGCAGCTTCCCGAAGAGCAGCAACAAGTCTGTAACTTTATCCAGCACAACCACCCTGTATGGGAAGTAGAGGTGGGTCAGGCATGAGGGGCCTGGCAGGGCCAGGAACTggattggcgatatcagctgctgtgacagatgcaaaatgaaaatggttcacacttcaagatggaggcagcagagcaacaagccatgcttgaggcccttcagagcacagcatgcccatgaagctggccttgGGGGGGCGATCAGGGG----------------GGTGGAGGATAGCCCAACCTGACAATGTTCCGCATGAGCAGCATGAAGGCATTTTTGGCGGAGACACAGAAATTCTTCCCGTAGACGGCGATCTGAGTGAGGTTGAAAAGTCAGAATTACCTGTGTGGA--GCTTG--CCAGGGCAGGGGC--CTGGGCCAGGGAACCCCAGAACAAGGGGCTGCTTGTGCAGTGGGGCTCACCATGATGTAGGCATTGCGGTTTAGGAACTTGATAAACTTCTCCAGACACCAGAGGCAGCACTTAAAGCAGCACATGATGCAGCGGGCCATAGGGTTCTGGGATCCTGGGAGTAAAGGGGGAGCTTATGTTTGGTCACTGGCCC---CTGACAGCCCCTCCC------TGA----------GGGGCCAGCTGCTCACCTCTCAGTTTGTTGTCAATGTACTCCAGAATGACTCGGGCCATCTGCACGAGGGTCAGGATGAGAGCTCCAAAGGCCAGCGACCCAGTGTGGTAGCTGCAGGAGG-GTTGGGGGGCGGGGGGCGTGGGCAGAGATGGCTCCAGGACCCCTGAGGCTCCCAGGCTCCCCATTCCCAGCCCCCTTGCCCTGACCTTACCGGAGTGTACGGATGAAGGCAGAGCTCAGGGGGAAGGTGGGGATGTCCTGGGGCTTCTGGAAAGCCCAGTAGAAGGAGGCAAAGGCCCCAGCCAGGACACACTGGCCCAGGGCCAGTACCCAGTTGACAGTCCAGAATAGTGCCAGGACCACATAGATTTGCAAGTTGAAGAGAGAACGCTGAACCAGGCCCGTGGATGAGTAGCTCTGGAAGATACACCTCAGCCCTGGGCACGAGGAGTTCACTGGCTGGGCCTGGG---------GGTGACAGAGTAGGCTCA-------------------------------------CTCCCAGCCAACTCCTGCCACTCCCGGAGTAGAGAGA-GAATAGCAGCCGCCCCCAGCTG-AGGAAGCCACTTCCTTCCAGGAGATCCTTCTCCGGGTTCGTGTTGGGTTCATACTGCCTACTGTGTGACAGTGATTAGTTTTCCTCCAGGCTCCAAGTGGGTACAAGAGCTCCCAGTCTACGCAGGCCCAGCCTTAATGGTGTGGAGGCAAGTGTGACCAGCCCCTAGCTCTCTCCCTGGCACTCAGTCAGCAATCTC-CTCTAAAACAGCACCTGCAACTTCAACCAACATGCTTTCTAGCAAAAATGAATGGACTGGGTATA-GATGGTATAAAGGAGTTACTCTTAATCTTGTTGGGTGTGATAATGGTAGAGTGGTTATGCTTTT a score=3369 s hg19.chr6_ssto_hap7 3167053 86 + 4928567 agatccatctcgatgcatgtacaggtgaaatggca-tgatgtccagaatttgccttaaaagt--ctccagaaaaaaaaatttatgaggc s canFam2.chr12 4334561 88 + 75515492 AGACTCAATCTGATGTGTTTACAGGTGGATTGGCACTTATGTCCAGAATTTGCCTTTAAGGAAACTCC-GAAAAAAAGAATTGTGGGAA a score=4316 s hg19.chr6_ssto_hap7 3167511 99 + 4928567 gctatcatctctacttttgcatatgtttaaaaattcccataataaaaagtaaaaaGT-CACAAATTAAAAAGCAACCCTTTCTAGCAAATATAACCAAAA s canFam2.chr12 4334861 100 + 75515492 GTTGGAAATTGAGGGTTTGTATGTGTTTCAAAATCTCCATAATAAAAAATAAAAAACACAGAAGTAAAAAAACAACCCTTCCCAGCAAATGTGACAAAAA a score=2573 s hg19.chr6_ssto_hap7 3167920 41 + 4928567 TGTCAGTCTTTACTGCTAGATCACAAGCAAGTTGAAAACAA s canFam2.chr12 4335050 41 + 75515492 TGTCAGTCTCTGCTGCTAGATCCTGAGCAAGCTGGAAGGAA a score=4411 s hg19.chr6_ssto_hap7 3168276 74 + 4928567 gaaccacatcattttgggctttgtatacccagtgcctggcacatagtgggtcctctgtacatgtAAATAAACCt s canFam2.chr12 4335091 74 + 75515492 GAACCAGGTCATTTGGAGCTTTGCATAGCTGGTGCCTGGCACAGGGTGGGTCCTCCCTAAATGTAAACCAGCCT a score=14834 s hg19.chr6_ssto_hap7 3168664 355 + 4928567 GGGGCTAATGCCTGCAGCACAGCTCATGTTCCCAGCTCAGACGAGGTGAAGATATGACAGGTTTGAGAAGAGTAAATTCCCAGCAGCCCAGCGCCACTCCCGGGGAACCTCACAGGGGAATTTT---GGAAGCAGCTTCTCTCTCGGGTCCCCCGCAGGGAGTCCCACCTGGCTACTACCTAGGGCTCTGTGTTCCAAGGGAGTAAGACTTAACAATATaatacaat-tcaacctgttgttg--agctcttatcaggtgccaggcattgtactaagcactttatgtgcccaaagtcatttcatcttctcagccacccc-agggatgggtattataattatcctcattttacagaggaatgga s canFam2.chr12 4335181 358 + 75515492 AGTGCGAATGCCCTGAGCAAAGCCGCTGGTCCCTGCCTCCA-GAAGTGGCCGCATGAAGGCTCTGAGAACAGCAAATGCCCTGCAGTCTGGGGCCACTTTCTGGGAACCTTGCAGGGGAGAGTGCGGGGAAGCAGCTTCTTTCTCTGCTCTTCCCCCAGGACTCCTGCCTGCCTATTGCCTCGGGCACTGCGTTCGCAGGGAAAAAGACTTTAAAAAACCAaacaacacccatctacagttatcagctcttatcaggtgccagacattgtacaaagcactttatgtgcctgatgtcgttcaatcttctcagccacccccagaggcaggtat---gattgtctccattttacagatgaatgga a score=37947 s hg19.chr6_ssto_hap7 3169362 863 + 4928567 ctgagactcagagggtgaagtggttgatggtcctcaagtcagagcaatgtcctggggaggggtggagta--agtcctgg---tatccagggctgtct----ctcccagcctcagtttccctccccacATGATggatggctcaacaggagtaccaggtattctggga------actggtttc--ttctagctctgctgggggttgagtgtgtgaccttgcacaagtgtcttgccctctgtggcc-tcagtcttctctgcacaatgaggaatgtgg---------cccctacagcccctcacccctactagtcccgcctccatgtcccctgc-ttcCTCTTACCGTGGGGTTGCATGATGTATTTATTGGCACTTTCTCACAGCCGGGGGAGCTGATGTTGGATGCCCAGAGCACATACTGGGGTTGCCCCGATGTAGCCAGGTACCCAGAGGGGAGTCAAGGAAA---GCATGATCACACGAGGTCTCCACAGGTCACTCGCTCCTTAGGGACCTGTTCCTAGGTGCTTGTGCAGATCGTTTGCTGCACagagagggctgaaattcagcctgtgtgcaccctttcaactctgttcaggcacagtgctggtgtgtctgcccagagaaaggggcacct-cttccagtgacaccaaggcactctaCAAGGCAAGTATTGCTTTGTTTTCCATCA--------------ACCCCCAGGACTCCAAGAGTGGCTGGCTGCGTGGGCAGAGGATACAGAGCAGTCATGGCCCAGTAGGCAATGCAGATGAGGAGGAGGACAAAGGTGACCAGTGGGTAGAACATGGTAGACATCATCTGTCCCACAGCCCTGCAGGGAGACAAA-GCTGTTAACCGGCACCGCCCCAG----------CTGTCCATCTTCTCAAGGGGCTGACCCCg s canFam2.chr12 4335539 904 + 75515492 ctgagact-ggaggctgcagtggctCATAGTCCTCCTGGCAGAGGCAAGTCCAGGGGAGGGTGGAAGTGCTGGTACTGGGCTTTCCCAGGGCCGCATGCTGCCTCCAGCCT--GTTTCCTTCTCTGAGTAACgggtggctgagtgggagcacaaccagctctggagtccctggctagctccctttctggttctgctgggggcctgttgtgtgaccttgagggaagtcctttttttctctggccctcagtctctgccgagcaattagggatttggaccagctggccctcaggtcaccccagccctACTGGTGCCCCCTCCATGTCCATAGCAGTTCCCTCACCATAGGGTTGCATGATGTATTCATTTGCACTTTCCCACAGCTGGGCAAGCTGGCGTTGGGCGCCCAGAGGACGTATTGGGGTTGCCCCGATGTGGCCAGGTACCCAGAGGGTAGTCAAGGAAGAAGGTATAGTCACATGGGGTCTCCACAGGTCCC---CTCCTCAGGGACATCTTCccaggtacttgtacaggttgtttactgcacaaag--tgttggaaatcagcctgggctcagtctttcaactctgtccagggacagggctg---tgtctgcccagaggaaggggcactttctcccaattgcactacagcatcatact-ggcaaatattgcccctTCCCCTACCCCCCATCCCGCCCTCACCCCCG---CCCCAGGAG-GGCTTGCCACGTGGGCAAAGGATACAGGGCGGTCATGGCCCAATAGACAATGCAAATGAGCAGGAGGACAAAGGTGACCAGTGGGTAGAACAGGGTAGACATCATGTGCCCCACAGCCCTGTAGGGAGGTAAAAGCAGTCCATCGCTATGGCCGCAGTCCCTAGCGCCCACCCACCTTCCAGTGGGCCTGATCCTG a score=92562 s hg19.chr6_ssto_hap7 3170516 2214 + 4928567 GGGGGGGGCTGACCCCGCTGCCCTCACTGGGgcctgccccactcccccagggtgggaccaacagggttagtgacattgtctttcatatctgtgtcctcagggcctggtgcagggctaggcatactgtaggtgctcactggataaa----------cagaactgaataaatCAGGCTCACAGGACCCTTAGAGGAAACTAGGGTCACAGAGAAGCCACCTGGGGCAGC--------TTCGGGTGGAGTAAGGGAAGATCACCCCCAA-GCGTGATCCCTTGGCAGGTGTGTGTGGCAGTTCCTGATCGGGAGCAAGCTGCTGCC---CCTCCTGGCCCGGATTCCTGCCGTTCCACTCAGCCACCACCACTCCCACCA----ACCCCT-CTAGAAGGCCTATGTCATATTCCAGGCac-------------tcattgaatcctcaagacaaccctagaaggcaggaattattgttacccccattttacagatggggaagcaaagccacagCAGTGTTCACCACTGTGCTATATTCCTCCCTTCTCCTCTGAGGCTCCCTGCCACCTCTCTAGCACCCCCTAGGTCCCCTAGCACTCCTGGGTCCACGCTGTCCTCAACCCCATCTCCCTCCCAGGCAGGCCCTAACTTGCTGGCCTCCTTCAGGAGGGCGATGGCAATACGAATCCGCTGCCGCAGGAAGATGAGCACCAGCAGCAGGATGGCTTCAAGCACCGCCAACACGATCACTGC-AGAGGATGGG--GCAGACAGACCTAGGTCAGGGCCAGGGCTGGGGCCGGGCATGGCCCAGGGCAGTCCTTGGGCAGCTGGTGGCTTGGGGGTGGGCAGGACACTCACGGGCGGCCAGCCAGGTCTCCTGCACGCTCTGGTAGGCACTGAGGTTGGTGGTGAAACCCAGCTGGGAGATGGAGGCGCCCTTGTCCCGCAGCACTCGGTACTCCTCCCAGCAGTAGTAGATGCCATATGCCAGCACGCCCAGCACTCCCAGGATCAGCACCAGCACCAGGGGCCCAGCCACCAGGCGCAGAAGCAAGATAAACAGTAGGCTCAAGACCAGAGCCACCCCCAGGGCACTGTAGGCAGGGTGAGGACAGTGAGGTTCAGCCCTAGCCCCTCAAATCTTTCCCCTTACAGAGGCCCTC-CCTGCCTTTCCACACACCACCCAATGTCCCCAGATTAGGC-CTCTTTCCCTTATAAATCCTGTTGGTCTTGGAATCCATTCGGAGCTCTGGCTCCTCCTCCTCTGTCCAAAGCCTGTGTTTCAGACATTGGGCGAGGGGGTAGAGGATCAGGGAGGA-AGAAGGCAAGGACACAAGAGGAGGGGAATCTGGTGACTCACACAAGAATCCAATACCAGGACTGGGCAAAATCTTCAAAGATCTTAACACTGATGTCTCGGGCATTGAGGCTGTCAATAAGACCGCTGTTGGGGA--GACAGAGTCAGATGGGGCTGTGG--GTGGAAGGG-GTGTGGCCAGGATGTGGGGGAGGGAGG-TGCCTACCTGATCCCCTGCTGTATGGTGGTGTCATTGGTGATCCCTGGGAGCGCCGGTGGAGTAATGTTGGTCCATGGAAAGCAGCGTCCCAGAGCTGGAAGG-GAGAGC---CGGGCTGCTGGGTTGG-GGGCCAGGAGCTCTGCCTGGAGGGTCTCTGGCCCCCTCCCAG-TCCACAGT-GCCCTTAGGGGAGGGA--AGGGTGATGGGCCTTG--CATCCCTCAGTGGGCTGCTTTTGATTTCACA------AATGGGCTTCTGTCCTGTGGAGCCCAGTCTA------------------------TCCCCTGCCTCCCCTCCCTGTCGTGCCTTGGTTTGGACCCTCCTCTCCGCTGGCCTCAACTCTTAGAACACCCTGTCACCCTTCCAT--CCACCCTCCACCCGAGTGGAGTGCCAGGGAGACCGTGGCACTGCCTGGACTTCATCACTCCAGGGTTCTGGGTCCCTTTGTGACTCAGACATCTCCAGAGGCTCTGCCCCAGAGACAGCATCCACACTCCCTGGCCAGGCTTCCAGGCTCTCCTGTccaaatccagcccatgttcccttctaatctgtacctttgctct-tactgtgcctctctctcagggctctctttccaccagaaatcccatccatgactccctgttcaaatccagctccatctcacctcctccaggaagccttctgaccttatccccACCTCCTTTGGCAACTGTTATGTGCCTACAGAGCCACTTACTGCCatccttgcaacaactttgccaggcagccttgctt s canFam2.chr12 4336443 2141 + 75515492 GACAGGTCCCTGCCTC--TGTCCTTGCCAGGGCCTGCTCTGCCCCCC----------------------------------------------------------------AGGCTGGGTGCACAGTAGGTCCTCATTGAACAAAATGGAATGGACTGAATGGAATAAATCAGGCTCA--------------------AGAATCA--GAGAAGCCACCTGGGGCAGCCTCAGGGCTTCAGGGCAAGTAAGAGAATAGAGTCCTTAAAGTATGATCTTTTGACAGATTTGGCAGGTAGGTCCTGGTTGTGAATAAGCTGCTGCTTCTCCTCCTTGCCTGGGTTCCTGC---TCTGcaccaccaccaccaccaccacAACGCTGCTCCTGATGGAGGGGCTGCTTCATGTTCTGGGAACCCAAGACactaactcatttaatcctc----------tacaaagtaagaactattg---cccccacttcacagacgggtaagctgagtcacagccgtgttaaCCGCAGCGTCTT--TCTGCCCTTCCCCTTCAGGGCCACCGGCCACCTTCCCAGCAC--------TGCCACGCCATGCCTCTGCCC---CTGTCCTCTGCCCCATCTCCCTCCCGGACAGGTTCTGACTTGCTGGCCTCCTCCAGGAGGGCAATGGCGATGCGAATCCGCTGCCGCAGGAAGATGAGCATCAGCAGCAGGATGCCTTCGAGCACGGCCAGCACGATCACTGAGAGTGGACAGGCGGCAGAGAGGCCTGCGTCAGG-------CCGGGGCCCAGCGCGGCCCCAGGCGGCCCTCGGGTGGTTGGTGGTGAGGGGCCGGGCGGGGCACTCACGGGCCGCCAGCCAGGTCTCCTGAACGTTGCGGTAGGCGCTGAGGTTGGTGGTGATGCCCAGCTGGGTGATGGAGGCACCCTCATCCCGCAGCACTCGGTACTCCTCCCAGCAGTGGTAGATGCCATATGCCAGCACGCCCAGCACCCCGAGGATCAGCACTAGCACCAGGGGCCCGGCCACCAGGCGCAGAAGCAGGATAAACAGCAGGCTCAAGACCAGAGCCACACCTAGGGCACTGCAGGCAGGGTGGGGTAGGTGAGG------CCCTCCCCCCTAAATCTTATCCCTTTCAGAAGCTCCCAAATGCCT-----CACACT-CTCAATATCCTCAGGTTAGACTCCCTTTTTCTTATAAATCTCGTTGGGTTTGGGGTCAGTTCTGAGCTCTGG---CTCCTTCTCTGTCC-AAGTCTCTGTTTCAGATGTTGGGCTAGGAGACAGAGGATTGGGGAGGGCAGCAGGGAAGGA---GGGAGTAGGAGAATC-GGTGACTCACGTGAGAATCCAATACCAGGATTGGGCAAAATCTTCAAAGATCTTAACACTGATGTCTCGGGCGTTGAGGATGTCAAAAAGACCACTGTTGGAGAGGGACAGAGTCGGGTGGGGCTGCTGCCGGGGAAGGGTGTGGGACGGAGATGCGGGGACAGGAGGATGCCCACCTGATCCCCTGGGAGATGGAGGTGTTGCTGGAGATCCCTGGGAGTTCAGGTGGAGTGCTATTCAAGAACGGAACACAACGCCCCAGAGCTGGAGGGAGAGAACCAGCGGGCTCCTGGGTGGGAGGGCCCAGAGTTTTACCTTCAAGGCCTCTGGCCTCCACCCAGAGCCCCAGTGGGCCTTAGGGAAGGGAGGAGAGAGATGGGCTTTGACCTCCCCACAGAGAGCTGCTCCTGACTGCACAGCCAAGAGGGCGCTCCTGCCCCACACAGCCCTGTCCAGCTTCCTTCACTGTCTCTCAGGACCCCTCTTCCTCCAGTCCTTGCTGCTTCCGGGTTGAGACCCTCATTTCCTCTGGCCT-GACTCTTACACTCCACCCTTAACCCACCATTATAACCCACCACTC---TCGAGAACCAGGGAGACTATG------------CTTCATCATTCTAAGGCTCTACATCATTCTGCAGCTCAGACACTTCCAGAAGCTCTGCTCTGG----AGTGCCCGTGCTCCCTGGCCAG--TTCAAAGCCCCTGCATTGGGGCTCAGCCCACTTTCCCCTCACCTCTATACCTCTGCTCTCTGGCGACCTTCTCACTGAGCGTTCTCTGT---CAAAAAGTCCCATCCATTACTCCCAGTTGAGCTCCATCTCCATGTCCTGTCCTCCAAGAAGCCTTCTCACCCCTTTCCCATCTTCTAaggcacctattatgtgcctaaagagccatttatctccaccctcccaatgactttactaagcaggctggctt a score=9169 s hg19.chr6_ssto_hap7 3173215 180 + 4928567 tgtcatttacattctaaagatgaggaaacaaggttcagagaggttgcatagttgggtcaagaccatagggctggaaagtgctagaatttatattcagatctacttgactttgaagTATTCACTTGAGATACTCCTTACTGTACTTAAATTGGTAACTGGATATCTCATCTTATGCTATAA s canFam2.chr12 4338584 170 + 75515492 tggcatttacattctaaaggtgaggaaaaaaggctcagagaggttgagttattggtccaagaccacaggattggaaagtgctggaatctagat----------ctgGGTTTGGAGCATTCGTTTGAGCTACTTTGTATTGTACTTATATCGAAAATCGGGTATTGTTTCTCATGCTATAA a score=1256 s hg19.chr6_ssto_hap7 3174001 22 + 4928567 TAAAAATTGTTTTATATTAAAA s canFam2.chr12 4338754 22 + 75515492 TTAAAATTTTCTTCTATTAAAA a score=4244 s hg19.chr6_ssto_hap7 3174166 134 + 4928567 GACATTTGCTACTGGAAGGAAGAGCACACTGTaaaagaaaaaaagttcaactgtgatcct-accacccagccacgttcacttataacatttgaacaaatatccttctagccttttccctgtgcatatatAAAAAT s canFam2.chr12 4338779 129 + 75515492 AACTTTGACTATTGGAAAGAAGAACATATAGGAAAAATTGAAAAG-TCAATTATGATCCCAATCACCCAGCCACGTTTGCTTGTGA-----GTAGGGATGGACATCTAGTCTGTTCCCAGTGCACAGACATTAAC a score=90463 s hg19.chr6_ssto_hap7 3174645 2133 + 4928567 TGTGTGtgtagattcacccatgtatgttttcatgagattttcatacagtctctttgtgaacaactctaatctcttcacctagaatgtagctgaagcagggagcagttgttatccctgcctctgtccccagcacctggcacatagtaggtccccaaAACACTGATGGTCTGACTGCAAGGCCACATAACAAAGAGCAAAATgaagacctgatgctaattccaattttgccaccaacaagctatgtgacttcactctctctgggcctgatttcttcattcaagcaatgaaaacactggactagatgacgtctgaggAAGGAATCTGTGCTTCTCACCTGGAGCAGAGGGGAGGAGGAAACTGGGGCAGAGTTCCTGTTGCAGGCTTGTGATCACCGTCTGTG-GCAGGAGTGAAAGGACAGACACACAGACACAGAGCAGGATGAAGAAGCAGGTCCCCTCACCACCACCATGGGGCTCAGCCTGTCCCACACTCCCCAGGAGAGCCAACCTGGTGATGATCTACCCAACTCCCCCTCCCTCTCGTGCCCACCCTGGCCCTTCTGGGCGACAGTGATGAGGTTAGGGGCAATATTCACCATATTCCAGGGTACCCCTGGCAGACAAAAGTTCCTGTTTTTTGTATAGAAGACTTCCCCAACAGTCTGTGAGAACTCGTTTTTTCCCACAGTCCATGGGTCCTCCGGGCAGGAGGACACACACACCTGGGTGCAGAGAGAACACTAAGGGGCTGGAACCTGAGACCCTGGGTGAGATCTGGGGTAGAGGCAGGTCCCAGGCTCTGACCTGGGGTGTGGGGCACTGTAGGCCGTTCTCAGCAACTGAGATGATGTTGCTGGACAGGATGCAGCTGAAGATGTTGAAGTACAGGAGATACGGCTTATCTCTGTGGGAGGGGAGGGACCATGTGCATCAGGGCCTGGTCAGGTGTTGGGGGAGGGGAGGGACCACTAGGGTGGCTTCTCAAGAATACAGTGGGCCCAGCCCAGCGT-------GGCCCATACC-----AGTCACCTCCCAGCTCCTGGCCCT---------AGCTCAGCTGGGGAGGTAGGGAGATGCCTAGAAGATCTCTCAGAGTAAGTCACCATTGCAGCAGCTGACAAATAGCTCAGAGCATGAACTTGGAgctccacaacttcatatcatctttatgatcttgagcaagtcac----ctgttctcggtcttagttctactccatataaaacagtagtgcctacctcatgagatttcaatgcgcttgtgtgtgtaaagtttactgcctgcctggaacatagtaaatgctatataaatatttgaggttttattatttattggaca---tctgtatgtgaggactgttggcattgcttctggaattccccttgaatttcaaataaggaaatcaaagctcagagagcttgagtaacttgtccaaggccacacaaccaaaactt----ggtccagttggggatccaaacaccaatctctgaactgtaaaactcatacacttaa-cacgactctccactgcctcccATTTCTGGGGGGACTCAAGAAGCTAACTGTCCAGCAATGG----TTCTTAACGTGGCCTGGAGTTGTCAGATTCAGGGAGGCTGAGGTGGGGTGGGGACAGCAGGGAAAGGCTGTGGAAGAGCACGGACAGGTCTGGAGCCTGAGT--TGGGGGGGTGTCTCCTGCCCAC--CCTACCTCGCCTCGCTCCTGCACTCCTCTTCTCGCCTTTGTACTCACTTGTTCTCCCCCATGCCACAGTAGGCCCCAGTAGAGTTCCTGGGGTAGAGGACTTGCCGGGGGTCTCCATACAACCAGGCTGCAGACAGAGGCACAGATGAGTCATTGGAGGGCAGG----------GACTTAGTGGG--GCAGTTATGGGAATGGTCCCTCCCTGGGTTCCTGTCCCTCACCCACTGCCC---TGGCTCTGAGCAGCTGGAAACTCACCCACAATCCCCACCACGATGTAACCTAGAATGAAGAGCAGGAAGAGGACGCAGCAGATGACATCTGTGCAGCTTCTGAGAGAGAAACGAAATGGGAGGCTGAGCTAAGGAGACTTGGGGAGGTAGGGCTTATGGTCTGGAGGGGTTAAGGGTTAGAGAGTTGGGTGATGCTGCAGCATGGGCATCAGTAGGCTTTATTTTTAt s canFam2.chr12 4338909 2015 + 75515492 TGTGTGGGTATATTTTCCCAGGTGTGTTTCCCTGAAACACTCATGCAATGTCTTTGCCAACATCTCTGATCTCTGCCCCTAAAATGTAGCTCAAACAGGAAGCAG-CATCTGCCCTGCGTCTCTCCTGGGTGCCTGGTGCCCAGCACGTGCGCGATAAAcagagcatctgactacaggatcaggctgcggagagtgaaatgaagaccgagtgctaattccagtcctgcca--gacaagctgtatggctttactctttctgggcctggtttcttcatttgagcaataagaaaataggactagatgctgcccgaggagagaatgca-gcttctcacctgGAGTGGAAGGGAGGAGGAAACCGGGGCAGAGCTCCTGCTGCAGACTCTGGATCACTGGCTGGGAGCCGGGGAG--------GACACGTAGACACAGAGCAGGATGAAGGAGGGAGCCCCCACAACACCA----------------GTACCATAGTCCCC-------------------------------TTCCCCCACCCATGTGACTCCTCCTTGACC----------ACAGCAATGACATTACAGGCAGCTCTCACCATATCCCAGGGCACCCCTGGCAGACAAAAGTTCCTGTTTGCCGTGTAGAAGACCTCCCCCACCTTCTCTGAGAGCTGGTTGACCTCCACGGTCCATGCGTTCTCGGGGCAGGAGGACACACACACCTGGGGGCAGAGAGCATGCTGAGGAGCTGGGGCCTG-GACCCTGGG-GCCATCT-GGGTAAAGGCAGGTCCCAGGGTCTGACCTGGGGTGTGGGACACTGCAGGCCATTCTCAGCGACTGTGATGACATTGGCGGTTAGGACGCAGCTGAAGATGTTGAAGTAGAGAAGATATGGTTTATCTCTGCGGGAGGGAAGGAAGTGTGGGTCTCAGGTCCTCGTCAGGTGCGAGGAGAGGGGA-GGACTGCCA-----------------------GGGCCCAGCGGAGGGTGGTGGGGGGCCCACACCCTGATGCACACTGCTCAGCAACTGGCCTTAAGAAGCTCAGGTCAGCTGGGGAGATACAGGAAGCACCGGAAAATTTTCTAGAGTAATTGAGCATCGGAACTGCTAACAAAT-Gttaagaa--------------------------------ttttatgaccttgagcaagtcacttcactgcccactgcctcaattccatcaggtgtaaggcaatagtacctacttcacagggcttgaatgagcttgtgtgtgcaaagtacaccatctgcctggaacgtagtaaaccctgcataattg-ttaaggttttattattTACTGGAAGCGTCCTGCATGCG-GAACTGATGGCATGGCTTCGGGGatcaccccggtgtttcaggtgaagaaatcaaagctcagactggttgaccaccttgcccaaagccatgcgaccagaacctactgagcccagctggggactcaaatgccaaattctgaactttaaaacctatgcacttaaccatggtt-----ctgtCTCCCATTACT-GGGACACTCAA-AAGCCAACTGGCCAGGAATGGAGGCTCTTCAATGTGGCTTAGAGTGGTGAGACTCAGAGAGGAT--AGTGGCAGGTGAGCAACAGAGGAAG--------------------GAGCTGGAGCCTGAGTGCCGGGATCGTGTTCTCTGCCCGCTGTCCACCTCACCTCTCGTCTG--CCCCTCTCCCTGCCTTCATACTCACTTGTTGGCTCCCACCCCACAGTAGGCCCCAGTAGAGTTCCTGGGGTAGAGGACTTGCCGGGGGTCTCCATACACCCAAGCTGGAAGCAGACACAGAGATGAATCACCAGAGGGCCGGACTTCGGGGTGAGGTGGTGGGGAGCAGCCTCAGGGATGGCTCCTGCCCTGGTTCCTG-CCCCCAGCCACTGCCCCCATGCTGCTCCGCTGCTGGAAACTCACCCACGATCCCCACCACGATGTAACCCAGAATGAAGAGAAGGAAGAGGACACAGCAGATGACATCTGTGCAGCTCCTGGGAGAGAAGCGG---GGGAAGC----CTTTGGAG----GGGGAGGCAGGGCATGTGGCCTAGAGGTATCACAAGTTGGAG-TTTGGGGGATGCTGGAGAATGGGCCTCAGTAGGTTTTATTTTATT a score=90429 s hg19.chr6_ssto_hap7 3177212 2600 + 4928567 CTCCAAAACACAAAAAGA---------AAGAAAACCTTTTTCTGGGTGGGtaaactttcttctgaagtaaaagacagaaaagcacacaactcgcaagggctcagctgggtgagttctctcgcttgtgaagccggcacttaagtcaagaaacagaacatcc-----ccccagaactgggaagccctcgatgcctgctccagacacaacaatcccccca-gggcaccacCCATCTGGGGCAGGAGTTTCTCTTTTTCACAAGTTTCCTACTAATATTTTAGC-AAATACAAAGCAAATACTGGATTCCACACTGCACCCACCACCCCCGCCAGCCCCCGGAGCAGTGCCCAGAGCTCACCTGTTCTTGATGGGGCCTCGAAAGGAGGGGTCGTATTTGACTGGCTTCCCTGAGGGACATGAGAAGAGGTGTGGAGGATGAGTCTCT----------CTCTGCATATCTTGT-CCTGCTGAGTCC---TCCTAGCCC----CAGGATCCTACCCAGGCCTCAGGTGTTT------------------------------GGAGGGAGATGGGCTAGGGCAGGACTGGCAGGAGGGGAAAACTGGGGAGCAGG----AAAGGTAGGATCCAGGCCTGGTCAGCAGCTCAGCAGCTCCCTGGGAGCTCCACCCAGGCTGCCATG---GGGAGGGGAAGGAAGGCCTTTATAGT----TTCCGGCTCACATCTCAAGGCAGTCAGTCTGGGAAATGGCCTTGGTCCCCTGCCC-TACCCTGGCACGGTTCTCCTGAGTCTCCCTTTAGCTGGGATGTGGGACTCCCAG------------TGGCTCTCACTCCCTCATTCTCATCCCTGCCTCCTCCCTAATCCCTCCCCAGGGACCACACAGACCCA---CAGCCCCTCAGGGAGGTCATGGCCTCTTCCCCTATCTGCCCCAGGCCCTACCT-TACCCTCTGGTTCAAGGCTATGGGGAAAGAAACTGGAGACAAAGGTGTCAACCCCAGCAGGGCCTGGGGAGGGAAGCGGCCCTGT-----------ACATCCTCACTCTGGT----GGGACCTCAGTCCCCTGGCCACAGTGTGCTCCGGGCTCTGGGCCAGCAGTCAGAGTGACACCTGAGCCCAGCCATAGAGATTGCAGG----------------CACGTTGAGTTCCTGGTCCTCCCTGAGTACACACACAGGGAGGAGGAGGGCTGGGCAGTCAGGGTTCCTTGTGGGCACTGAGGAGG-----GAGAGCCGAGGGCTGGGCAGGAGTCTGGGAAGGAGCGGGTGGGGTCCACTTTCCCCAGGTGCGCTGGACTCTGTCCCTCCATGGCTCATGGA--------CAATGATTGACCTGAAGCCGCTCCAGGAAGTCTACTCGGGAGTCCTCACTGCCTGCTCCCCTATGGCCCTAAGGGACTCAAGCCTCTCCTCGAGAAGGTCCCTC---ATAGGGGTTCCTTCCCCTTCAGACCAGAAGACCAGGGGGGCCTCCGCAGGTGAGTCCCCAG---CCTTCACTGCTCGTGGGGA-TCTGGAGGCCAGT-CCCCAGCTCCCTCTCTCCTCAGAACCCCAGCCCCTTTTCCTTGCAGATTCTGG----------------------------------AAACAGGCTCCCTGCTGTTTCTCCCCTCAGGCCTCACCCTTCACAGGAACCCC----AGGGGCCCTGTCCCTATTCCTCAGAGTACCCCAAGACCAGCTCCTGCTCCTAGCTCCTCACAGAGACCCCTAGGCAGGACCCCAGCCCCCTTTCCACAAAGACCCTCAGCCCCAACTCCTCACAGGGACCCCCAG-CAGAACCCACTCCCTCTGCCACTTCTCCCAGAGACCCTGGCAGGCAGAGGCCAGCCCACTCAGGGTCCCCTCACTCCTCAAGGGAGCCGGCAGGCCACAAGCAGCTTTCGCCCTCAGAGACCCAGACTCC-AGGCTGAACCTCCTCCTCCTTACAGG------GACCCTGGCCTCACTGGTTGCAGGCTCTGCAGCACA-GGACACTCCCAGCATCC-AGCCCTA---TTCTGCTCAGGGCCCCAA-CCTGCCACCTTCCATCTCGGCTTTGTTTCCTAGGGCCCTGCCCTTAGGGACCCAGAGTCCAGGCCTGAAATACCCCCCTCCTCCCAAGGACCTCAGCCCCAACTCTTCAGAGGCACCCAGCTTCACTCCCCATGGGCTCCCCAGCAACAG-CCCCAGCCCCCGGGCCCCATCCTCCTCCCAGGACCCTGACTC--CCTCCCTCCATG-GCTCCCGGTTCCCGGGCCCTCCCCTCAGGGACACAGTACTCTCCTTAGTTCCTCTCCCTGGAGCCAGCCCCAGACACCATTCCCAAAGTAC---------CCGTCCTCCCCTCCCTCCACAGGGTCCCGGGCCTCG--------------CCCCAGTCTCACCGTAGGCCTCGTCATCCTCGTCCCGCTGCTTTCCCCCCATGGCTCAGTCTCCGGAGTGATTGGAGCCCTGGAGACCTGGCGTCTCACCTGCTGCCCGCCCCGCCCTCCCACACGTCACAGCCCCACCCCCGCCTGTGGTCCCCGACACACTCTAGTTCCTTCTTCTC----AACTTT----GTGCCC---AGCGGGCTGGGGAGCTGGAGCCTGGGACGGGGGCTCAGGGCTATTTCCTG-GGGGCACTACGGACCACAGTGAACGACCTGGCATGCTCTGATAAGAAAACGCTTTATAATCTCGCAAACTACCTTAACTGCCGTACACTC---CCAACACGCTCCCGCCAAAGATTAAAGTGTGGA s canFam2.chr12 4341017 2630 + 75515492 CCCCAAAAAACAAAAAAAAACCACACCAAAATAACCATTTTTTGGGT-GACAGAAATACTTCtgaagtatgacacagagaagtgaacacctcataagtgcctggctggatgaat----ttgcccaaagagcacacgcccaggtcaagaaacagaacatcccagcaccccaga------agcccccttgtgcccgctccAGACTCAAACATTCACCCATGGGCATCATTCTCCTGGGGCAGGAG-TTCTCTTTTTTATGACCTTCTTACCAATATTTCAGTAAAATACAAAGCAAAATCAAGATCCCCCAC-----------CCCCTAATTG-----GAGGCAGTGCCCAGAACTTACCTGTTCCTGATGGGACCTCGAAAGGAGGGGTCATATTTGGCCGGTTTCCCTGAGAGGTACGGGCAGGAGTATGGAGAGTGAGGCCCTGAGCAGATGGCTCCCCATCTCCTGTCCCTCCTGCATCTGCATCCTGCCCTGAAGCGGGATCCTACCGGGGCCCAGGATGCCCCTGTCCCTCCAGAGTTCAAGGTGGGAGGAGGTGGGGAGATGGACTGGGGTAGGGCTGACAGGAG-----AATTGGAGAGTAGGAGACAGAGGTGGGATTAGGGCCTGGTCAGCAGCTTGACTGCTCACCACGAATTCTACCAAGTTGGCTTTGGAAGGAGGGGGAAGGGGGGTCTTTTCAGGTTGATTCCAGCTCCTATCTTGAGGCTGGCAGCCAGGGATATAGCCTTCACCTCCTGCTCACTTCCTGCCCCATTTGTCCTGTGTCTCCCTCCC-CTGCGATGTGGGACTCTGAGTCAAGCCACCTCTGGCTCTTACGCCCCAATCCTTATCCCTCTCCGCTCCCTGTACTCCAACCAGGGTGGGCGCAGATCCACAGCAGCACCTGAGGGAGGTCACAGCCCCTCCCCACAGCTGCCCCA-GCCCTACCTCCGCCCTCTGGCCCAAGGCCATGGGGAAAGAGCCTGGAGCCCAAGGCATTAACTCCTACAAGG------------AGGGCCCCTATTTTCCTGCTCCCCACCTCATCTCTGCTAAAGGGGACCCCAGGCTACTG-------------CCAGTCTCTGGGTGAGCAGTCAGGGTGATACCTAAGCCTGGCTGTTGAGACTGTGGGCGGTTTCGATTGTGGCCATGTCCTGTTCCTGGTCCTCCCTGAGT--ACACACGGGGAGGAGGTGGGGCCTGCAGCTAGGGTCCCCTGTTGGCACCGAGGAGAGGAGCGGGGACAGAGGGCTGGGCAAGAGTGTGGGAAG----GGGTGGGATTCATTTTCTTTAGGTGTTCTGGACTCTGTCCCTCCATGGCTCTCAGACGTGAGATCAATGATTGACCCAAAGCTGTTCCAGGAAGTCTACTGGGGAGTCTTT-CTGGCTCCTTCCCC-TGACCTGCTTGGGCCCGACTTCTGCCTCTGAGAGGCCCCTCCCTCTTGAGATTCCCTCCCACGCAGACCTGGGGCTCA----GACCCCC------AAGCCCCAAGGGACCCTCACTGTTCATGGGGATTCCAGAGGCTGCCGCTCCAGTTCCTTCTCCTCT-AGACCCCCCACCCCTAATCTTCAGGGTCTCTGGGACAGGCTCCTGGCCCTGGTTTCTCACAGAGTGCAGATAGGCTCCCTGTTCCTGCTCCCCTCAGGCCTTACCCTTCAC--GAACCCCTTGTGAAGTCCCTACCCCTGTCTCTCACGATATCCTGAGA--AGGCCCCCCTCCTA-------ACAGAGACCCCAGAGGCAGGCCCCGGTCCCCTCTCCACTGAAACCTCCAG-CCTAACACCTCACAGGAACCCCCAGACACACCCCACTCCTGCCATTACTGCTCACACAGACCCTGGCAGG-------------------------CCAACTTCT---------------------AGCACCTTTTCCCTTCAGAGACCCAGGGTCTAAGGCTGAAACCCCACCTCCTGACAGGGGCCCAGACCCCAGCCTCGCCCCTCACCGGCTCTGCAGCACGTAGACCCTCCCAGTCCCCGAGCCCCATCTTCCTGTTCAGGACACTGACCCTGCCTTTTGCCATTCAGGCTTTGCTTTCCAGGGCCCTGCCCTGAGGGACCCAGATTC----------------------------------CAGCCCCAACTCCTCACAAGACCCCAGCCTCACTCCCCAAAAGCTCCCAGGTGAAGGACCTCAGCTCCTGAACCCCATCTTCCTCCCAGGACTCTGACTCTACTTCCTTCCATGAGCTC----TTTCCAGACCCTCCCTTCAGGGATCCAGGACTTCCCTCAGCTTCTCTCCCTGGGGCCAGCCCCAACCATCATTCCCCCAGAGCTGGCCCAGGCTGGCCGCCCCTGCTCCCA-----TCCTGGGCCTCACACCACAGCCTCACCCTCAGACTCACCATAGGCC---TCATTCCTGTC---CTGTTTTCCCCCCATGGTTCGGTCTCCCGAGTGCTCGGAGCCAGGGAGACCTAACGACTCACCTGCTGCCCGCCCCGCCCTCCCACACGTCACAGCCCCACCTCCGCCTGTGGT-CCTGACACA--CTAGTTCCTCCTGCACGCAGAGCCTGGGCAGTGCCCTGGAGAGGACTGGAAGGCC-AAGCCCGTGAC--CGGCTCAGGGCTGCTTGCAGCGGGGTTCCATGGGCCACA------------ACACACTC---TAAGGAAATCCTTCAGGTTTTTGCAAATTACTCTAGCTGTGGTACACTCACACCTATGCTCTCCTCCCAAAGATC-CAGTGTTGA a score=67739 s hg19.chr6_ssto_hap7 3180117 1526 + 4928567 AACTGGATCTT---CATAGTGGCCCCCCACCTCCCTGCCCCGCACTGGGCGGCCAT-CACACCAGCCACACCTGTCCAGCCTGCTTCCCATCCTATTCTGGCCCTTGGACCCACATTCCCTCTAGC--CAAGTATGCTTTCTCCCCA-CCCCAA-------CACAAAAATC------GCAGTTTATTACCAAACCCAACATTTATTGAGAACAAAAGGAACCAGTTGGCATAGAGGCCCGACTTCAATTCATCAAACTTCAACTGAGGATGGGGAACACGGGGGGTGGCCAGCCCTGAAGTTGCCCTCCCAGGGAGGAACCAGCTCTGGGAGGGAGGGGCTGTCAGACCTCCAGGGCCTGGCTGGGATCTCTGGTCAGGAATGTGTGAAAGGGTGGTGGGGAGAGAAGATGGCAGCACCCCCAGGCATGGGCTGC-GAGCAGCTGGTGGCAGAGGAGGCGGCTGAGC-TGTGGCCATCCA-TGCTGGGGA--------------GAGAGGGTGTGGTCCGTTCTCATGTGTTGACAGGGGGCAGGGAGCCGAGCTCGGGCAGCAGCTCAGGGTGTGGGTCCAGGCGGGCCAGACGGCTCTGCTCCAGGGCAATGGCTTCGGCTGAGTGCTTGCACTTCTCAGAGCCACATTGGCAGGTGAAATATTTGCTTTTGATGTCCCAGAAGCGGTCGCCATAGTCAAACCTGTCAGAGGAAAACAGGAGCTTGTGGGACCTGGACCCAGCCACCAAGAGCCCACCCCGAAGACCCTGTGGATCCTGCTCCCTGAGAGGGACCCGACACCCAACCTATCTTCTCCAGATGGGATCTGAGCCCCTTgtatgttctatggactttcagcatcagcattgcctggggacttgttagaaatgcagaatcctgggccccatcccaagcctactgattcaaaatctctctgggaggcacaggactgtttccccaagtcctccaggaaatacttatgtacactgaaatctgagaagctctgCACTACTCCATGCCTGGACACCAGGTACATGCCAGC------CTTCAGGTCCCAGGTTTGCTGCATCTCCCACC---CCCTGGCAGAGCCCCTAGAGACCCCTAGAGTCTCACCCTAGCTCCTCCCCAGTCCGGATGTCTCGGGAACTGAAGAAGGCGATGCGTGGAAATCGCAGGTCTTGGTGCAGCATGAAGACCCGGACGGGAATGATGTTGGGGTCACACAGGTGGTTGATGAAGCGGCTGATGTTGCCATAGTAACGGGCATCTATGCAGTACACCTCTCCATCCTGGGGCAGGGGGATGGCACTCTTCACATCTCCCCCGACCCTGCTTGC--------CCTCCCCACCCACTGACTCCCCAGTCCCTCCTCCCCAGGTTTCCATTTGCTGACTTCCCAGAGGCTCCTGAAAGCCAGCCCTGGGGAGCAGCAGGGTAAGGAGGGTCTCCTGCTCACCTTGTTGTCTAAGTCGAAGAGGTAAGAATCATCCTCTCTCACATCAGCCTCAGCATCAGAGATCAGCTCCCCGACATACCTGTGGGACAGGAATCCATGGTTCTGAAGGT s canFam2.chr12 4343670 1406 + 75515492 AACTGGACCCTGACCACCCTGGTCTCCCCACCTTCTCCCTC-----AGGTGGCTGTCCACACCAGCCACACCTGCCCAGCATGCTTCCTGTCCTGTTTGCTGCTGTGGACCCACATTCCCTCTAGCTGTGGGCCTCCTTTCTGCCCAGCCCCTATTGCCCTCCCAACAATCATCAAGACAGTTTATTACCAAACCCAGTATTTATTGAGAATAAAGGAAACCAGCTGGCATAGAGGCCCAATTTCAATTCATCAAACGTCAGCTGAGGAGGGGGAACA--GGGAGTGGCCAGCCCTGAAGTCACCCTACCAGGGAGGAGCCAGCTCTGGGAGAGAGGGGCTGTCAGACCTCCAGGGCCTGGCTGGG-TCTTGGCAGAGGAATGTGTGAAGGG--GGAGGGGTGAGCTGATGGCAGCACCCTGCAATGTGGGCTCTGGAGCAGCATGTGGCAGGAGA-GCTGCTGTGCAGGTGGTCGTCTAGGGCTGGGGCgtgtgtgtgtgcgtgtgtgtgtgtgGTCCATTGTCAGGGGTTGACGGGGGGCAGCGCACTGAGCTCTGGCAGCAGGTCGGGGTGGGGATCCAGGCGGGCCAGGCGGCTCTGTTCCAGGGCGATGGCCTCGGCCGAGTGCTTGCACTTCTCTGAGCCGCACTGACATGTGAAATACTTGCTCTTGATGTCCCAGAAGCGGTCACCGTAGTCGAAGCTGTTGGAGGGGCATGGGACGCTGTGGGGTGCAGGGCCGG-CAGCACAGGCCCGTCCAGA-----------------------------------GCACCCACCCCATCTCCTCCCGACAGGCTCTA-------------------GGACCTGCAGTACTGGCCCTGCCGGTGGCCTTGTTACACGTGCAGGAGCTTAG-----------------------------CTCT------GGCTCAGGATT--------------------------CCGTTTGCACTG---TCTGGGAGGCTCTGCCCTTATCCACGCCTAGAAGCCAGACCCTCTCCAGCCTTGGGCTTCGGGCCCCAAGTGGCCTGCCTCTCTCACCACACCCCCACACACAGCATGGACAC---------CTCACCCCAGCTCCTCCCCAGTCCGGATGTCTCGGGAGCTGAAGAAGGCAATGCGTGGAAAGCGCAAGTCTTGGTGAAGCATGAAGACCCGGACGGGGATGATGTTGGGGTCACACAGGTGGTTGATGAAGCGGCTGATGTTGCCATAGTAACGGGCATCGATGCAGTACACCTCTCCATCCTGAGG--GGAGGGCGGCACTCTTCATACTCGCCACTGCCCTGCCTGCCTGGCCAGCTGCCCCACCCACGGACCACCCAGGCCCTCCTCCCCAGGCTTCTGTCTGCCCACT------------------------------GGGTGTGAAGGACAGAGGAATTTCTTGCCCACCTTGTTGTCTAAGTCGAAGAGGTAAGAATCATCCTCTCTCACATCAGCCTCAGCATCAGAGATTAGCTCCCCGACATACCTATGGG-CAGGAAG--GGCGTTCCGAAGGT a score=15308 s hg19.chr6_ssto_hap7 3181706 609 + 4928567 AATGGGCAGGGCTGGCAGGTGTGGGGA--------------------AGGGAAGGCCTGGAGCAGCAGTGGTGGGCAAGTGAAAGGGCAGCATTCCAGCCTTGACAGAGGAAGCCTTCAGTCAGCACAGAGACAGACAACAAGCTCTGTGGTTAAGGGGATTAATGTGTAGGGGCAGTTGGCCTGGGTGGGGAAGTTC----GGGTTTGGACACAGAGAGGTTTGTGTTCCAGGAGCCACCCGGCAGGAATGGGCGAT--------ATGGAACAGGAGAGGGGCCAGGACTGCAGGAAGAGCCAGAGGTACAGGAGTGGCAAGGAACTCAAGGCATGATTCGGGG-CAAGAGCACCCACACATATCTGGACACCAGAGGGAGGAGAGGAGCCAGCTATCTAAGGAGGGT-----GAGCAGACATGGG---AGATTC---AGACACACGGAGAGGACGTGGGTG--------GGAAgtgactgtcaagagacagcttcagcagagtgggaagggcaaaggccgattttggcagggacaggcagtgagtggatggtggggaaactgaggcccagcaggaaggggctgcttgccagagaagttgagagatgacatgatggaaagaaactggatggtctgttgaacaggcaagtatggttagagg s canFam2.chr12 4345394 618 + 75515492 AACAGGCAGGACCAGCGAATGTGGGGGAAGCTGGGGGCCAGTAGGCCAGGGATGAGCTGGAGAAGCAGCCA-GGGAAAGGTAAAGGGAAGGGCCAGAGCTGCGCCAGAGGAAGA--TCAGTGAGC------------------CCCTGTGGCTCAG--------TATCTGTGGGCATGTGGTGTGGGTGGGGAAATCCATGTGAGTTTAATCCCTGGCAGGTCTGTGGACTAGGAACCACCCAGCAGGTGGTAGCGATGCCAGGCGACAGGACAGGAGAGGTGTCAGGGCTGCGGGAAGGGATGGAGCCATGGGGGCCATGAGAAATGCCAGGAAGGAGCTGGGGACAGGGACACCCACACTTA----GAAAGCAGAG---GAAAAGAAGCCGGTGA-AGAAGAGGGATGCATGGGACTGACGTGAGGACAGCGTCGTGGGAGCCAAAGCGAGGACCAAGATGCAGGGCAAGGCACGGGTAGTTGGGAGGCAGCACTGGCAGGAGGGTGAGGGCAGAGGCAGATTCTGGCAAGGATGAGCAGTGAGTGGGTGGTGGGGAGCCTGAGGCCCAGGAGGAAGGGGCCATTTG--AACAAAGTTGAGAGATGGTCCAATAAAGAGA---TGGA-GGCCCCTTAAATAGGCAAATGGGGCTGAAGG a score=116685 s hg19.chr6_ssto_hap7 3182663 3040 + 4928567 ggagactaaagtaagattgagggttgtgggatggcagccaagagaaagggggagattacagatgctgggcagagaaagaactgatggagagggac-aggcccctgaggaggtggacagataggtagctgttatcacctccactctacagac---------aagaaaaataaggctcaaagaggttaagtaacttggccaagaacatccagaagcagagaggggctcaaacccaagtctgtttgtctcccaaactggcactttctccaGCTAggaagggcgaggagggggtggaggggaaggtagagggtggaggtggaggggagggaagaCAAGCTCTGTGGTCTGGGCAGAGTGGAGGCAGGTGCCATTCTCAGCTGGGGGGATGGGGGTCAGAGGCGGCTGGCTGCTCAGCTGCAGGAATAGGGGTCAGAGGAGGCTGGCTGGAGAGTGGCCAGATGGAGACATGTGACTCATCAGGGCAGATGGCTGAGAGGGAGGCCTGGCAGTCAGCAGTGGCCATGTATCCCCTTCCCACCAGGTGTTAAGGTGCTCCCGGTGACTTACTCGCAGATGAAGGTCCCCTGTGGGATGGTCTGCAGGGCGCGGACCCCCCAGCCCATCTTGGCTGTTCGGTAGAGCTGTAGCCGCACCCTGGGGGT-AGGAGAGATGGCGCTGTTGGGTGGAGGCCCTGGAAAAGCCCCAGGGGCAGGGAGGAAAGGGTGAGGTGGGGAGAGGGTGGGCTGTGGAGCAGGGCCTCACTTGATGCCACTCTGTACGACCCGGTTCTTGCAGTTTCTCCAGCATGAGCACGCCTGGTTACACTCGAAAATCAGCGGAGGCTCAATCTTGTTAAATTCCTGGAGCAATCGCCCATCCTAGGGT--GCGGAGGGGAGGAT-AGTGGTTTCTCTGTGGGGCCCACCTCAGCTGCCCACCCAGGAACCCCAAGA------CTCTACAG-------------AGACAGGGAAGTTGGGGTTGGGGAGGTCACACAGGCTCTGAGATCCGAGAGCACGAAATGCAGGAGCATCAT-----CCCTGGTTTGCATAGACCTGGGCACACGCCCATCGCTGTCCCAGCCACATCCCAGGATTCCCAGGCCTTGCCCAGTCCTCTCAGTCACTTCCCCCACAGGGTAGGAGGTGAGGGACATGGTCCCAGGGAGCTGGTTTATTGGAGGCTGGCTCCTCTGAAGGAGGGGCCGGGTGTCTGTGGCCAAGGCAAGGGGCACGCACCTTGTCATACCAGCACCGGATGCTGAGCTGGCCGCACAGGCAGTTGGAGCTAGAGCAGTCGTCCACACACGTGCAGTGCTGGGGCGAGGAGGCA-GAGGTCAGCTCAA-CCCCATGATCGGTCTGGGCCCCTCTACTCTTGATGCCCCCTGACCCCCTAACCACTGTCCTTTCTTTGGGGTCCATGTGTTACAACAGTGGGTGGTGATGGTCCTAGGGTGACGGGTAATCAGTATGGT-------GGTGTCCCcagggctactgggagctcatatgataccttgctgtgacctaggaaaaggatccctcccctggtggggatgcgaccccacaccagggatccctttcagccaacccttccttggccaggtgcctttgctggtttgaagcttgtccaactgtacttggcagctctCGGTGTCCTTTTGGGGAGGCCCCGGGCCCCCTACTCACCTGCAGGTGGGTGATGTTGCGATCGATGTTCATGGTGGACGTCTCGCAGTTCTCTGAGATGTACTTGTAATCCTCAGGGCAGGGCTCCCCATCCACACCGTTGACACAGGGAATGGGCACGTTCTCATAGCCCCGAGCCACGTCCCTGCAGAAGACGGGAAGAAGGGGCTGGGAAGCTGGAAAAGGGGGTGAGGAGCTACTCCAGGTATAAGGAA------GAGAGTT---------------------GGGGAGGTTCCTGGGGCT----GGGGGCAGGGGAGtaaggttgccaggtaagatgcaggacagcgagttaacatagaattttagataaacaagaaatagctttttag-----------------------tatgtcccaaaaattacacaggacattctc-acactaaaaaagtatgcatctgtgcatctgaaattccagtttaactgggtgtcttctatttttatttgctgtatctggcaaccctaGTGGGGAGGGGGCCTGTGGGTGGTTCTGGGGATTCAGTGGTGCATGGGGAGGGGTTGGGGAATGTTGTGAGGATGCAATGGAGCCTGGGGAGGGTATGGGTGGGGAGGAGGTGGTCTTGGGTGCAGAGAGGGGCCCAGGGCTCACCGGCAGATGATCTTCTCTGTGCGGATGGCCCGATTTCCCACCCCAAGTCGGAGCTTGCGGTTGAGTTGAAGCGCAAACCACACGTCGGAGCGCTCGGGAGTCAGGTCCCATGCTGTGTCCCCCTCTTTGTTCCGCAGCTCAGGGTTGGCCCCACGTGACAGGAATAACCTGAAGAGGGGACAGGATGCCCAATGCAGGGTCTGAGGCTGCAAGAAGTGGGGGCAG--GGGCATCAAGG-GCGG----GGCAGGGGCTCACAGCACGCAGTCATGGTAGCTCTCCCGAGCTGCGATGTGCAGGGGGGTGTCCCCATGGTAGTTGACAGCATGGAGGTCACAGCGCGCATTCAGAAGGACTTCGGCGATGGCGGCGCTGCCCGTGAAGGAGGCCCAGTGCAGGCAGATGTTCTCCTCCTGTGGAGGTAGGAGGGGAACAGATGAGGTGCAGGCAGCTGGGCCCTTGAATCCAGCCTCCACCTTGCTCAGGGGCCTGGGGCTGCCCTACCTCAACCAAACGCTCACTCACGTTGTCAGTGAGGGTGACGTCGGCGCCCCGCGTCAGTAGCATGCGGATCACCTCGATGTGCTTGTGCTCTGCAGCCCAGATGATGGGCGTCCACCCCCCACTGTCCTGTGGGTGGGAAGGGAG---TGAGGGTGGGG-----------------------------GCAGCTGGCCCTGCTCACCAAAGCAGCAAATGGTCAAGA----------------TTGGCTGtgtgtgtgaatcccagctccaccattcacaagctgtgggaccctgggtaagtcacttaacgtctctgggtcgcagtttcttcatctaaaaaa s canFam2.chr12 4346012 2783 + 75515492 GGGGCCTAGATGAAGACTGA--GCCGTGGAGGAGGAGCCAGGTG-ACGGACGGGGTGACAGATGCTGGGAAAAGAAAGAATTGCTGGACAGAAGCAAGGCCCGTACAGAGGTGGACAGAAAGGCCgc-atcattacctccattttggagacaaaaaaaaaaaaaaaaatgaagctcaagcaggctaag-aacttggccaaggattcccagtggcagagcacagctcaaacctgggtctgtaggtctc-----------------caGGCTTGGAAAGGCAGGGC--------AGGGGAGGGGAGATGTTGCAGTGGTGGCAGGAGGCTATCAGGCTCTGCGGTCTGTGTGGGCTGGGGGCAGGTGCAGT-------------------------------------------------------------GAAGGGGCAGG-----------------------------CCCACCAGGGAGGAGAGCC--AAGGGAGACCTGGGAGTCAGCTGTGGCTAGGCACCGACCCCC---------------TGACCCC---TACTCACTCGCAGATGAAGGTCCCCTGGGGGATGGTCTGCAGGGCGCGGACCCCCCAGCCCATCTTGGCTGTTCGGTAGAGCTGCAGTCGCACTCTGGGGGTGGGGAGGGAGGGTGGTGTTAGGTGGAGGGACCTGGAAAGCCCCCATTTGAGGGGCACAGGGGTGGG--GGGGTGAGGGCAGGCTGCAGGAGGGGTCCTCACTTGATGCCGCTCTGCACCACCCGGTTCTTGCAGTTTCTCCAGCAGGAGCAAGCCTGATTACACTCGAAAATCAGTGGGGGCTCAATCTTGTTAAATTCCTGGAGCAGCCGCCCGTCCTGGGGTTGAGGGTGGGGAGAGTAAGTGGTTTCTATCTGGTGCCCACCTCGACTG----CCAAGGAACCCCCAGAAAAATCCACCACGGATCCCAACCCACCAGAGAGGGAGGAC-AGGCTGGGGAGGCCACACATGT-----------GGAGCTCAGACAACAGGAACCCCATCAAGCCCTTAATTTGCATGCAGCT-GGCACAGGCCCATCTCC-CCCTAGCACCCTCCC------CCCAACCCCTGCTTTGCCCTGCC-----CTCTTTTCATGAGGGAGGAAGAGAGGGACA-----------------------GGCGGCT------------------------------TGGATGGGGCAA-GCACACGCACCTTGTCATACCAGCAGCGGATGCTCAGCTGGCCACAGAGGCAGTTGGAGCTGGAGCAGTCGTCCACACAGGTGCAGTGCTGGCGC-AGGAGGCAGGGGGTTAGCCCGATCCTCAGAAGCAG-------CCCTATCCCCACAGTGCTCCCTGA-CCCCTAACCACTGTCCTTTCTCTAAGATCACTGCTTTAGAACAGTGGGGGCTGATGGTCCCAGGATGAGGGGGATTCAAAATGCTAATTACAGGGGTACCcagggccaacatgagcccgt---agaccttcatgtgtcctaaagaaaggacccctctcccaa-gtggatgcaggcccacccccaaggtcccttccagcc-ccactcccctggccaggtggc-tcgttggcccacaacttgcccagctgtgcttggcag-------------------------------------ctcACTTGCAAGTGGGTGATGTTACGGTCGATGTTCATGGTGGATGTCTCGCAGTTCTCTGAGATGTACTTGTAGTCCTCAGGGCAGGGTTCCCCGTCCACACCGTTGACACAGGGGATGGGCACGTTCTCATAGCCCCGAGCCACATCCCTG--ACACAAGGGGAATGGGGGCT---------------GGGGTGAGGGGGTCCACAAGGTGCAAGGAGAGGCCTGAGAGGTCCCTGGGGCCGTGGGAGGAAGGGGGTGGTTCTGGGGGCTCACCGGGGTGGGGGGAGtaaggtggtcaaataaactagaggacagcccacgaaaactggatttcagat-------aaatagtttttttgtttttttttttttttaccatagataagtccccagtgccatgtgggatgctcttaacactaaaaaaacatgca-ctggtcatctgaaatcctcctttaac---------gctcttttaatttactgtatctgac-atccTAGTTAGG-----------GGTTGGCTCTGGGGATTCAGGGGAGCCTGGGGAGGGG--------------------------------------------------------------------GCAG----------AGGGCTCACCGACAGATAATCTTCTCAGTGCGGATGGCCCGGTTCCCCACTCCAAGCCGAAGCTTGCGATTGAGCTGCAGCGCAAACCACACATCGGAGCGCTCGGGGGTCAGGTCCCACGCTGTGTCCCCCTCCTTGTTCCGCAGCTCCGGGTTCGCCCCACGTGACAGGAACAACCTG-GGAGGGGACGGGAAGCCC---GTGGGGCCTGGGGCCACCAGCCGAGCCGGCGGCAGGGTGTCAGGGTGCGGGGCAGGCAGGGGCTCACAGCACACAGTCGTGGTAGCTCTCCCGTGCTGCGATGTGCAGGGGCGTGTCCCCATGGTAGTTGACGGCGTGGAGGTCGCAGCGGGCGTTGAGGAGGACCTCAGCGATGGCCGCGCTCCCAGTGAAGGAAGCCCAGTGCAGGCAGATGTTTTCCTCCTGTGTGGGTGGGAGGGGTGAGGGTG-GGTCTAAGCCG-TGGGCGCCTGAACCCAGTCTCCTCTCTGCTCAGACCCC---ATCTCCCCTACCCCCACCAGACT----CTCACATTGTCCGTGAGCGTGACGTCAGCACCCCGTGTCAGCAGCATGCGGATCACTTCGATGTGCTTGTGCTCTGCGGCCCAGATAATGGGCGTCCAGCCCCCACTGTCCTGTGGGTCGGGAGAGAGGGAGGAGGGTGAGGGGCTGCCGTCCCCTGCCCGGGGCCACCCAGCAGCTGGCCTAGCTTACCCAAGCAGTGCgtggtctagagcacaggccctagagctggactcggaacaggggtctctgctccacccctcatgtgttacaggaccctggctaagtctctgaacgtctctaggtctcagcttcttgatctacccca a score=1527 s hg19.chr6_ssto_hap7 3186014 55 + 4928567 TGGGACTAGTAGCGTCTACCATCTGATGCCAGAGAGAAAATAAAGTAATTGTTCt s canFam2.chr12 4348795 46 + 75515492 tgtgactaatagcgtctactgctcaaagtt---------gtGGAGTAATTTTTCT a score=3387 s hg19.chr6_ssto_hap7 3186270 104 + 4928567 TTTCC------------------TAagtctgcccactcaaaagtcctagaagcagcgacaacccaataacaataaacactcctaggaacatagattgtattctctaaaaaatgcttctggcc s canFam2.chr12 4348841 119 + 75515492 CTTTCCAAAAAGcacatattttttaggtctttccactcgaaagtcctaggat--atggtaacccaatagcaataaccactgctgaggacacagaccacg-tctctaaaaaacatttcctgtt a score=59353 s hg19.chr6_ssto_hap7 3186630 1115 + 4928567 taaaggaagcagagtttcttagagaaatggtggattctgagttgggggcaggaaatgtgctgaaaggtcaggaggctctcaaaggccactgggccactgggtcatgtcacagccacagaggcc-tcttaaaggggcttcttctggac-aatgatggaataattcaaagactgagaagaatgccaataaatgactaaaacacatccaatgtatgacaacccaagagttaataaaaagcctcactggacactttcagagattaagacaggaactgattattctgaaacttgataaagagaaagaaacgagAAAGAAAAGAATG--AAGAGAAATACAAATGAGGAAGAAGAAAGCAATGAGGACAGACACGAGCAGTGT-------------GAGGTCAGATGTAG--GAAAGGCGGCCCAAAGCCTGAGGCCAAGCCAAGGAACCCAGGCACCAGGGACCCAGAGGGGCTGGGCTGGG--------TGGGCCGCTGACCTGGGCGTTGACGTCCACCTGTCCTGTGCTCAGCAGCAGGCTGACCATCTCCAAGTTCCCGATTTTGGCTGCGTGGTGGAGGCAGGTGGAACCGTCCTCCTCCTGAGGGAGACACGGGCAAATGAGCCTTTGGGCTGGCACCCCAAACCTGGTCCCTGACTCCGGGGGCCA---CGCCCTGCTGCCTGCGCGCACACCTTGCTATAGACACAGCCACCACGCTGCACCATGTAACGGGCTACCTCCAGGTGGTTGTTCACCACGGCCTCCATCAGTGGCGTCCGCTGCTGTTTGTCCACTGCATTTATGTTGGCTCCAGCCTGT---GAGGGGGCAGGAGGGCTGGCACCAGGGAGGCATGGGGCAGGGGA-GGGGCCTAAGGGCCTGGTGAATGAGGCATGGGGCCGGGCCCGTGCTGACCTGCAGCAGCACATGGCAGATCTCCACGGAGCCCTTCTGGGCGGCTGCATGCAGGGGCGTGCGCTTGCTCTGCTGGTCGCTCTGGAAGTTGGGGTCCAGGTTGTCCACTGCGGGGAGAGCCCGCCACACCGGGAGAGGGAGGGACAAGTGGTAAGCAAGCTAGGGGGcaggtggcacttctttcaggaaggcttctcagggccccaagctggatcagggcccctcctggca s canFam2.chr12 4348960 1095 + 75515492 taaaggaaccagagtcccttagagaaatggtagat--caagtctggggcaggaaatgtactaagaggtaaggatgctcttagaagttgctggg----tgggac---caaaagccacaggagccaggctcatggggttcctcctggacaaaccacaggacagttcaaagact--gaaaaatgacagtaatgggctaaaacAGACCCAACATATGACACACTAAGAGGTAATAAGAAGCATCGCCACACATTCCTAGAGATTAAGGCAGCAACTGATCATTCCaaaa------acatagaaagaagcaaacaagaaaaaagtggaaaaaaaaatacaaatgaagaaaaggcaagaaaTAGGGACAGACTGGAACAGAGTGATGGAAGTGTTGGAGATCAGCGGGGGCTGACAGGAGGCACAAAGGCCAGGGCTGAG----------------CCAGGGGCCCGGAGGAAATTGGCTGGGCAGCCAGCCAGGCCACTCACCTGGGCGTTGACGTCCACCTGTCCTGTGCTGAGCAGCAGGCTGACCATCTCCAAGTTCCCGATTTTGGCTGCATGGTGGAGGCAGGTGGAGCCATCTTCCTCCTGAGGGAGATGTGGGCAGATGAGTCCCT-TGCTGGCACCTCAAACCCTGTTTCTGACCCGAGGTCCCAGCTGGCCCGGTCAC-------CACACCTTGCTGTAGACACAGCCGCCACGCTGCACCATGTAGCGAGCTACCTCCAAGTGGTTGTTCACTACAGCCTCCATTAGCGGGGTCCGCTGCTGCTTGTCTACTGCATTGATGTTGGCTCCAGCCTGTAAGGAGGGGGCATGTGGGCTGGCATCACAGAAGGGCTGGGCAAGAGAGGGGGCGCAAGGGCCTGGTCCACGAGACAGAGGGCCTGGTCCGAGCTGACCTGCAGTAGCACGTGACAGATCTCAACAGAGCCCTTCTGGGCGGCCGCGTGCAGGGGCGTGCGCTTGCTCTGCTGATCGCTCTGGAAGTTGGGGTCCAGGTTGTCCACTGTGGGGAGAGCCCGCCATACCGGAAGAAGGAGGGACAAGTGGTAAGTGA-CTAAGGGGCAGGTAGGACCTCCTCTAGGAAGGCT------------ATGTGGGGTGGGGGGCCCTCTGGGCA a score=149165 s hg19.chr6_ssto_hap7 3187893 2591 + 4928567 GTATAAGCACTCAGAACAGGACCCagcacctatg-------agtcaccac-atccccatcgttatgggttacatgtg----tcttttccccaccacactaagtccttcagggcaaggactgtgtccttcacgactgtactcctggccctgtacccagtgcctggtatataca---tgaagcttggtcaaggtctgc--------tgaaggaatgggtGG--CACTCACACAGCATCAGGATCACCTTCTGCAGCTCGCCCTGCTTCACGGACAGGTACAACTGCCGAGGGTGGAAACGGAGCTTCTTCCGCCTGCCAAGGGAGCACGGGAGCGGGGAGAGAAGGGGAGCTCCTCAGATTCCAGCATCAGCCTCGACACCACTCCTCTGGCCTCAGCCCCAGTTGCTGTGCCT--GAGCAACTCCCCACTCACCTCTCTGACTCCTGGATGACCAGGGCCTTTTCCAGGGCCTCCCGGCCTGGCCCCAGTGGCAGCCCCACGGCTGAAAGGCAGCCCCCATTGGGCAGGGTCAGGGAGGGCCCTGAGCTGTCAATGGTGTCAGCCAGGGGATCGCAGGGCGGGCGCCGGGGTTCCCCATGCCCTCGCATCCGGGCACTGTGGAAGAAGGAGCTCATGTCCAGGAGCAATAGGGGTGGGGGAGGGAACAGACAGTACAGAAGGGGGAGGCCAGTACCTGGGCTGAGAAGTGTCTGCTCTCCCGGGGACATCCTGGGACAGGGGTGGGGGTGCAGGAGCTGCAGTGCCGGCCGGTGGGGTCACCCCGTCACCCCGGGGGATGGTCACCTCTTGAGCTTCAGAAGCATCCTCCCCACAGTGGGGACAGAAGACCATCCCATTCAGCTGAGACACACAGGCCTTGTGGAAGCGGTGGGCCACACGGAAGTCAGGGTGGCACTCCAGGAAGGTGCCCTGGGAGCAGGGAAACAACATGGTCAGGTTACTGGGGCCCCCTCTGCCACAGGGCATGCTACCTGTCTGCCCCACTGGTCACTCACCGCCGTGCAGAAGTAGCCGCAGCCCGGGCAGCAGTGGTGTTTGACCATGCGGGCGCGGTGGGTCTCACAGAGCACCATCAGGGCCACACGGCTGGATGGCCTCATGGTCTCCCGCTTGAGGATGGCGGCATTGCAGCCTGACAGCTGTGCGCAGTGAGGATGGGTGAGAAGAGAGCGTGAGGCTGGGGCCGGGGACTGGACGCC--------CTGGCACCTCTCCCACCAGCCCACGGCCCCACCTCTCCGTCCACACTCTCAGTGGCCATGCACTTGTGCCCCGCCCTCTCGCTGATGCGGTCAATCTTGGGTGCCTCCATGCGGCAGCTGCACAGGGGCAACTCCTCAAACCCTCGCTCTGTCTCCAGCGAAGATGTGTCATTGGACACCCCTTGGATGGAGGAAAAGAGGAGCTGAGGGAGGCTCTGCACCTCACCTACTGGGACCCCTGGCGGGTCCTCTCACTCCCTCCCTACCCCACCCCGCCATGCCCCAGAACCCCTAAAGCCTGGCCATG--------GACACCCCGGCTCTGGCGTGGTTCCCCTCCTTCCCT---TTCCCTCCTGCCCTGAGGTCGCCCCCTAGTGGCTCCCTGTCCCGGCAATTGGCAATTACCAGCGTGGTTGGGGGAGAGGGTCCCCTCGCTGGGCAGCTCCAGGGACCCCAGAGGGACCTCCATGTACTCACTGGGGCCTGAGGAGCCCACACCATTCACTCCTGACACAGAGACAGAGAGAGTGAGAGTGCGAGCTCACAGGTGCCTGGACGCGTGGGTACATGCAGGTGGACATGCGAGAGCGTGTGTGTGCGTGCACACACTCTGGGGGGCCGGGCGGGGGCTGGAGG---GCACCCAAAAGCAGCAGAGCCTCCTCACCTCGTGGCTCCTTGGCCCGCGGAGGCTCCCGCTTGCGCCGTTTCCGAGACGGCTTCACCCATGGGCTGTCTTTTCGCCATTTCTTCTTGGCCTTGCGCCGGCCACTGGAACCACTCTGGGAAGGGGGAGGAGGAGGAGTTAGGAACCCTCACCCCCAG----GGGCCCCCCCAACACCTTCAGGAC-CAGACCTCCAGC------CCCATAGTCTCCCACTCCTCTGGAGATATCAGCCTCCGTCTCTTACCCTATCTGACTGATTCCCTGActcctca---tcttcctcttcttcttcctcttcctcctcctcttcctcttcttcttcttcctcctcttcctcctcctcctcttcACTTAGTTGTTCAGTTAGAGCTTCAACTTCAGACTGGGAGAGAGGCAGAACA----------------------------------------------------------------------GACATATCCAACCCCCAGGACTCAGACAATGAGG-TGAGTAAAGAAAACCACCACCACCATTGCCCCCCGCCACTACCCACGGATGGCT-GCTGGGGATAAGTGTGGGTAGCAGAGGAGACAAAGGGCCACATAAAGAGAGGGTGCatggaatattacacagcagtgaaaaagttacagacagcaatgtgcacagatcttggtaatgtgatattaagttaaaaaacaaaaagcaagtaccagaagataa--acatactttgataccccttttatgatgttcataaacaggcaagaccaCCAATGGTTGCTAAAAACACTAGACACAAAGCTCATGAGAAACTTTATA s canFam2.chr12 4350107 2612 + 75515492 GTATAAACA--------------CAGCACCTACGTGTTTGTCGTCACCACTGTccccatcatcctgggttatctgtgagtatgtctccccctccacgctccgtgtttcggggcaaggatgatgaccttcactgttgtacccccagccctgggcccggggtctggcatgtatggtctggtgttccatcaaggtctgcagaatgaatgaatGAATGAGTGGAATACTCACACAGCATCAGGATCACCTTCTGTAGCTCCCCCTGTTTCACTGACAGGTACAGCTGTCGGGGGTGGAAACGGAGTTTCTTCCGCCTGCCATGG------------TGAGGGAGAGGGGTAGGT------------GTCTCAGAAAGGGAACCCACCTTTCAGCCCCAGCCCTCATCGCCATGCCTGAGAGCCACCCCTCATTCACCTCTCTGACTCCTGGATGACCAGGGCCTTCTCCAGGGCCTCGCGGCCTGGACCCGGTGGCAGCCCCACGGCTGAGAGGCAGCCCCCATTGGGAAGGGTCAGGGAGGGCCCTGAGCTGTCGATGGTGTCGGCCAGAGGGTCGCAGGGTGGGCGCCGGGGCTCCCCATGCCCTCGCATCCGGGCACTGTGGGAGAAGGTGCTGATGTGTACCAGCAGT-GGTGTTGGGCAGGGAACAGATAGTTGGGAATGGGAAGGCCAGTACCTGGGCTGGGAAGTGTCTGCTCTCCCAGGGGCATCCTGAGCCAGGGGTGGGGGGGCAGGGGCTGCAGTGCCAGCTGGTGGGGTCACCCCATCCCCCCGGGGGATGGTCACCTCCTGGGCCTCAGATGCATCCTCCCCACAGTGGGGACAGAAGACCATGCCATTCAGCTGGGACACACAGGCCTTGTGGAAGCGGTGGGCCACACGGAAGTCAGGGTGGCACTCCAGGAACGTGCCCTGGAAG-------ACAAGGCATTCAGGCTCCGGGAGACCCCTCCCCCACGGGGCACGCAGCCTGTCCGCCCCACTGGTTACTCACTGCTGTACAGAAGTAGCCACAGCCGGGGCAGCAGTGGTGTTTGACCATGCGGGCACGGTGGGTCTCACAGAGCACCATCAGTGCCACGCGGCTTGATGGCCTCATCGTCTCCCGTTTGAGGATGGCAGCATTGCAGCCCGACAGCTGTG-GCAGTGTGAACGGGCAGGAAGAGG--GTGAGGCTGGGGCCTGGGGCTGGGTCCCCCCCACTGCCGGCACCTCTCCTATCAGCTCACAGGCCCACCTCTCCATCCACACTCTCTGTGGCCATGCACTTGTGCCCAGCTCTCTCGCTGATGCGGTCAATCTTGGGAGCCTCCATGCGGCAGCTGCAGAGGGGCAACTCCTCAAACCCCCGTTCCGTCTCTAGTGAAGACGTGTCATTGGATATCCCTTGGACGGAGGGAAAAGGGCGCTGAGCGAGGCCATCCCCATCACCCATGGGGACCCCTGGTGGGGCCTCTCACCCCCGCCCTGCTTTTCCC--TCATGCTCTAGAACCCCTAAAGCCTGGCCATGGAAGGACAGACACCTGGGCTCCAGTGGGATCCTCCTCCTCCTCCCGGTACCCCCCAGCCCAGAGGCTGCCCCCTAGTGGCTCGCCATCCCAGCAATTGGCAATTACCAGCGTGGTTGGGGGAGAGGGTCCCCTCGCTGGGCAGCTCCAGGGACCCCAGAGGGACCTCCATGTACTCACTAGGGCCTGAGGAGCCCACACCATTCACTCCTGACATAGAGACAGAGAGAGTGAGAGCACGAGCTCATAGGTGCCTGGACAcgtgggtacatgcgtgagtacatgcgtgagCGTGTGTTT--GTGCACGCTCTCTGGGGGCTGGGAGAGGGGCTGGAGGAGCAGACCCAGAAGCTGAGGAGCCTCCTCACCTCGTGGCTCCTTGGCCCGGGGAGGCTCGCGCTTCCGCCGTTTCCTAGACGGCTTTACCCATGGGCTGTCCTTCCGCCACTTCTTCTTGGCTTTGCGCCGGCCACTGGAGCCACTCTGGGA------TGGAGGAAGAGTTAGAGAGCCTGGGCCCCAGCCCACGACCTCTCCTCCCCTCTGAGGACTCAGACCTCTGGCCCCAATCCCAGAGTCCCCCCTGCTCCACAGGATGCCCGCTGCGAGCCCTTACCCGGTCAGACTGATTGCCTGAttcctcatcttcttcttcttcttcttcctcttcctcttcctcctcctcttcttcttcctcctcctcctcttcctcttcttcctcACTCAGTTGTTCAGCCAAAGCTTCAACCTCAGACTGGGAGAGAGGCAAGGCAGGGCTGGGGAGACAGCAACCTCCAGCCCATAGCCCTCTCTTGCAGGTAACTTGAGAAAGAGACAGGGAGGGACTTATCCAACCCCAAAGACTAAGGCAGTGAAGCTGGAGAAAGA-----GCTACTACTACTGTCCC-------------AGGATGGCTCCCTGGAGGTGAGCATGGATGG----------------------GAAAAGGAAGTGAGCTGAATGTTAGACAGCTGTGAAGAACTC----ACAACAATGTGTGTGAATCTTGGGAAC---ATATTAAGCAAAAAAAAAAAAA--AAGT-TCAGAAAACAAGCACATAGTTTAAGTCT-------TGAAGTTCACATGTAAGCAAAACTACCCATGGCCACTCCAAACACTAGATGGAAACCTAATGATAAACTTTATA a score=11834 s hg19.chr6_ssto_hap7 3190499 277 + 4928567 GACATCACCTGAACCCACTGGTCAATCTTATCACTAACAAGAAAAATGACCAGATTAGATGTTCCATGCATCCTGATGTGATGTGGCCAGAAGCACTTGCACCCACTGTCAAGTCTTCTT--------------------------GGCacctgaagctgattccgcctctagatctatcagtttacaagaaatat-gggcagagaggatgtgtcaatctccacccaatcagccaactcctaaatgtgaaaaattctgtaggacaactgagctggtttctttgacaaataaatggcaaaaaaaa s canFam2.chr12 4352925 295 + 75515492 GACATCCCATAAATTCACTGACCAATCTCA-----AACATGACTAATAAAAAGACAAGATGTCCTGTGCCTCCCGATATGACACAACAggaagtatgcacaccagctatcaaatcctctcaccattaaaaaaaataaaaaccccaaatcacccgaagccgatcatgcttctagatct---agtttacatgaaatatcgggcagagaggacat-ttagtcctcacccaatcagtgaattcctaaacatgaggaattctgtatcacaagtgacctggtttcttcaacagataaatggcaaaaaaaa a score=48994 s hg19.chr6_ssto_hap7 3215472 1334 + 4928567 aaTGAACAAGCAGTCA--------TGGTGCAATGTGATAAGACA-------CCCAGGTGTTCTGAGAGTC-AGAGGAGGGCTCAGGGG--CCCCGTGGTCTATGCCTCAACGTTGGTGCTGGCTTTCCCTTCCTCATTTCTGTGCTTGCTTTTAGCCCCTGTTGTCTTGCCAGGACTCTAAATGTCTCTTAACTGGTCTTCCAGC---CCCTACATACTGATTCCAGAATAATATTTCTGAAATGCAAATCAAATCATATCACTTCCTTATCTAAAATTCCATATAGCAAATCGCCTTACAAGCTGTAAATGCTGTTTCTTCCATAAGGCATTCTCTCCTTCCTCCCTGGTCTAGTGTCATTGTGGCCTTC-CTTCCCTCCCCAGCCCTGAAAGGTCCTGA---ACTTgcagttcctttaatgcgctctggggtttca-------------------------ttgctc-acctggatgcttgcatctcttccttgtcaggt----aaacactcatcttttaaggct-atctcaagttcattgatgaaacctttctgatcttctagagagacctaatattcccctgtttgtgtccctgtgaactttatatggactcctatctcagcttgtatcagtcaggatggctacatca-tgctgcagtaacaaacaaccctggaatctcagtagcttaacacaacagttttatttctcactattgctctctgt---tgggtcagta--ggagtgttagag---tctctgatcatcatagtcactcaggcatccagatcaaaggaggctccatcaaaagagggtgctggagtgtcttgtgttacattggcagttaaatacttgtgcctgacagtaacaacacatgtgacttctgctcttatttcactggccaaagcaagccagttaggcctcttgcagtggcctaacttcaggagggctgaggaattccatcctatcatgtgcctggaag---gcagaaaacgggaaaattcatgaagagcctcaatggctgcctcaactcggtgtagcgctgactggctcacatatctctctcccactggacagtgggGGAACCAAACGTGTCACAGCGTTCCTACCCTTTAGCAGTTTGTGCTCCAGGAATGTGGAGAGACCAGTATATGGATGGATTATAA--CTCTGTGTTAATGTTACAGTCTGGGTTT-GCTGGCG-------TGGAAGGAGTTTGTGGAAGAAGGGCAGTAGTTTATAGGGAGAGGAGGATGGAAAGGGATGAtcttaattttggtgaccctgacagcagagcttgagacaggacttggccgtaggtagttaatttaggtgatcccagaaagcagaagcgaggctatagggagtgtgagatcctgaaggaggaaaggccagtttaagagaat s canFam2.chr12 4376866 1369 + 75515492 AATAAGTAAGCAACCAGAGGATGCTGGGGCAA-GTGCTGAGATGTGGGCAGCCCAGGTGTCGGGAGAGCCCAGCGGACAGCACAGAGGGTCTCCGGAGTCTGCCCCTCAACACTTGT-CTGGGCTTTCCTTCCccactgctttgcatccatgtagcccctggtctcttgcaaggattaaaatagtctcctaactggtcttccaattcaccttccacactgtttccaatataatatatttgagatgcagatgaaatcatatcactcccctgcctacaaTGTTGTATACCTAATTGCCTTTTAAACTGCCACC-CTGGCTCCTGAGTAGGGCAGACTC------CTTCCCCGTCTCATCTTTCTGTGGCCTCCTCTTTCCTCTCCCACCCTAACCCTTCCTAACTTACCTGCAGTTCTCTTACCTTCTTCCAGGGTTCCAGACTCCAAGCCTTTCCCTACACAGATTGCTTTGCCTGGGCTGTCCTCTCTCTTCCTTGTCGGGTGCTTAAATATTCATCTTTTAAAGCTTATTTCCGGTTCCCATATGGAGCCTTTCTGAGCCTCT-GAGAGATCTGATACCCTCCTCTCTGTGTGTCTGTGAACTCTAGATGCATCCTTATCTCAGCTtgtatcggtcagagtggctaagcaaatgctgcagtaacaaatagcaccacaatc--agtagttccccatgcctgttt-attactcactgatgctacctgtcagtgagtcagcacggtggtggtgggggcctctctggtcatcagaatcacttggggatccaggttaaagaaggctccaccaaaagagggcaccagaatatctcatgtcgcattggcaattag-cacttctgcctagaaaaaacaacccatgtggcttctgctcacatttcattggtgacagcatgccatgtggctat---------gcctaacttcaagagtgctgagaaattcaat---accaagtgcctggaagaaggcaaaaaataggaaaattggagaacagcctcaatgactacTGTGGCTTGGTGCAGTGCTTACCTGCTTCCAT----CTCTTCCACTGGACACCAGCGATGCCAAGT-CATCACAGGGTCCCTGCCCTTGAGCAGTTTGCGCTCCAGCAATGGGCAGAGACCCATAAACCAATGGATTGTAATTCTCCATGTTCATGTTATAGTCTGGGTTTGGCTGGCATGTTGGTTGGGGAAAACCCATGAAAGAAGAGCAATGGGTCATGGGAGAGGCAAGTATGACAGCGACAGTCTTAATTTGCGTGTCCCTGAAAGCAGAGTCTGAGATG-----TGGGTTTAGGCAGTTAATTTAAATGATTCTAGAATGCAGAAGTAAGGC-------AGTGTGATTTTGGGAAGAAGGAAAAGCCAATTTAGGATGAT a score=6741 s hg19.chr6_ssto_hap7 3217121 179 + 4928567 tcactgttgtgtgcagt-ggagttcgattcccccaggccctcctgaggagag-agctgaatgtctccagacgctttccacctgaaggacaggaggcaggagcatctgtctactgcttcccactctgcaat-aattgcaggttgactctggg-cattagttctcTGCCCTTTTTTTTTTTTTTT s canFam2.chr12 4378235 183 + 75515492 TGGCTATTGTGCTCGATGGGAATGCGACTCCACTGGAATTTTCTGAGGAGGGAAACAGAAGGTCTCCAGAAATTGCCCATTGGAAGGACAGGAGGCAGGAGTATTTAGCCACCAATTTCCGTTCTCTGATGAGTGGCAGGTTGACTCTGGGACATTAGATCCCTGGCCTTTCCCCCTGTGTTT a score=40683 s hg19.chr6_ssto_hap7 3219980 951 + 4928567 TTGAATAGGTATCATATGTACCCAGTGAAAACTACAAGGAGTAATAAAGGGGATTTGGTGAAAATTAAGTTGCCTTCTTTACCTCCCACCTCATTTTCCAGCCCCCAGTTCTCCCCAGAGGCAACTCTCCTATCCAGTTTTTTGTAAACTTTTCCAGTGAAATTATATACAcacagagagcatatgtggctactatcctctttccctcc-tttttttgcataaatggtggcatcccatacatacagttctgaatgtctatctagtttaaaagtgtatattatataacatata-tatctggagacattcagctctgtacacacagataagccttaagcttgcagagactgcgtagtattcagttgtccccataccacaatgtgct--gtgtctgtcccctattaatggacgtggga-gtttccaaacatttcctcttggtaacagtgaatgctaaagcaaatatcctggtac------cttttatacctgtAGGGTAGCCGATCTTCTCCTTTTGATGGTCCTAATT-----CTCAAAGGTAACCTTAAGGGGAGTGTATTTTGCTGTTGGTTCTGTGGATGACAGGTGACAAAACAGGGTGAGTAAGGCTACGAAATAGCTAATGAATTTGCCAAGCCAAACCTGAGGTTCCAGGCTGTCTTAAGTCAAAGCCTGAATTCCTCATACCACACTGGGGCTGGGGCCAGA-GACGGGGCAGGAGGAGCTCTTCTCAGGTATAACCTTTCATTTGTGTTGGGCAGGAAAGCAAGGCATGAACGTATGTC---TTTCTACTGGGCAAGTTCCCTCTTCACCCCTTGGCAGCACTGGAGGAGTGAGGGCAGGAGGATTCTCCCATGTGAGCCCCAGGCTATCCTTTTGTCAA------GAGGGTACTGGTACCCAGAACTGGGAAGGGGATGAAT-ATCTCCCC--------ACTCCCCAGG--ATAAAGGAAAACATTAGAGAGGAATTTTC s canFam2.chr12 4381845 955 + 75515492 TTGAATATGTACCACACATACCCAAC-AAAAGTGTAAAGAGAAATAAAGGGGATTTTGAGAAGAGTAAGTCTCTCTCCTTGCCCCACATCCCATTTTCTAGCCCTCAA----------AGACAACTCTCTTATCCAAATTTT-GTGTGCCTTTCTGGAGAAATTGTATATATATAAGGAGCGTATGTTGCTAC-GTCTTCTTTCTCCCCATTTTTCTGCATAATTGGCAATAGACCACACACATGGTTTCAAATGTCCATTTAGTTACAAAGTATATATTATATTACGGATAGTATCTTGAGACATT--GCACCTCATACATGCATAAGCCTTAAactttcagaggctgcatagcattccactgtcc--aaactataaggtactctgtgttactcctctgctaaatgacttgggttatttccaaacatttgctcacaatagtgatgaatgctgtagtgagtatctttgtacaccactcttCCACACCTGTAAGAGAAAAGAACATTTCGTTCTTATAGTCctaatttaattctcacagataactttaagaggagtgtattttgctgttggctccatgtgtgacaggtgacaaaacaggataagtaaggctgtgaaacagctaataaatttgccaagccaaacctgagattctaggctgtctttagtcaaagcctgaatttcttctgccacactacAGCCGGGGCCAGATGTCTGGGCACAAAGGGTTCTACTGGAGCATGACCTTTCATTTGAGTCTGGTAGAAAAGCAAAGCATGAATGTATGTCCCTTCTATACTGGA-AAGGTCTCTCCCTGCCCCTTGGCAGTGTTGAGGG--TAGGGGCAGGAGACTGCCCTACTTTGAGTTCA-------CCACCTCTCAAAGGTGGGAGGGAGTTAGTA---AGA---GGAAAGGAGATGAATCATCTTCCCCTACACACAATTCCCAGGCCATGGAGGAAAACATTAGAGAGGCattttt a score=30939 s hg19.chr6_ssto_hap7 3220931 785 + 4928567 AATGAAAGGGCAGAGGAGG-CTAGTGAGGCCCCCACTGCCACCAATGCTAAGCCCAGAGCTGGGG--TTGGGGTGGTGAGGACCGGAGCCAGGGCAATTCAGCCATAGGCCACCCCTCCCCCTGGCCCATCCTCAGCTGACCCCTGAGCACCTGAGTTGTGTTTACCACCCTCTTACCTGGGTTACCCAGGGCAGCTTCCCTGATGGGTAGCAAGAAGTGGGTGATAACATGCACCATGCCCCCCACCAGCCCAAGGACAGTGG-AGACCTCAGAGGGCTG---------------AGGTAAGAGCTGCGGTGTGGGCAGATGGACACCCTGGTACACCCCAGGCCTGTGAGTCTTTAGAGGTTGAGTTTTTGTCTGAAAGAGA---TATGGCGCC-TACAGGAGGTCAGGGACAGGCCTTCTGTTTCTTGGG-AGGCCCTACCCCACCCCTTAGTTCCTCGTTCCATTCTCAGGAATTGTTTGTGCAATGGATGGACAAGGACAGGAGGTTCAGTGTC-TAACCCAGTGTCTGGGCCTGCAGGGTGGCCTCTGAGGCCCAGGGCCCTGGAAGAGCCTGGGCATGGGGAGGAGCCCCATGGGGCAGGGCAAAACCCTTTCTGAGGCTCTAAGGGTGATGTATGTGGAGATTCCTCAAGATCATAGTTGGGCAATCACTTCAAAGTTAGTA-GGCAGTGCCTGCTAGGATGGGGGATGGTGTGTGTACCGAGGAACTTAGCAGAGGCCTTTGT--GTGGAAATGGGTGGGGTCTGACCCAATGTAAATATTTTTATTAAAAAAGAAATGGATGA s canFam2.chr12 4383124 777 + 75515492 AATGAAAGGGCAGAGGAGGGATGGTTAGGTCACCCCTCCCACCAAAAGTAAGTCCAGACCTGGAGGATGAAGGTGGTGAGAG--GGATCCAGGGAGGTATAGCCTGAGGCCATCTTGCCTCTTG--CCATTTCCAGGGGACCTCTGAGTACATGAGTCATGGTCACCACCCTCTTACCTGGGCTACACAGGACAGCCTCCCC-ATAGGTGGCAAGAAATAGGGGAGAGGGAATAATATATGCATCACTGGCCACGTAGTACTGGGAGACTTTGGAGGGATGGGATGGACAGAGGTGAGGTAGGAGCTGTGTGGCGAGCAGACAGACACACTGGTATACCTCAAGCTTGGCCGTTTCCGGGGGCTGAGTCC----CAAAAAGGGGATTTATGGCCCCATATGGGAGGTCATAGGCAGGCCTTCAGTTTCTTGGGGAGGTCCT--------------TACTTTGCTTAATTCTCAGGAATTGTTTACGCAATAGATGGGTGAGAAGAGGAGGTTCCATGTCCTGATCCAGAGTCCAGGCTTGCAAGTTGGCCTCTGGGGTTCAGGGGCCTGGAAGAGCCTTGGGATGGGGGAGAGCTA---GGGACTGGGCATAACCCTTTC-------CTCAGGGTGATTTATATAAAGGTTTCTCAAGGTTATAGTTGGGCAATTAGTTCAACATAAGTACGTTAGTGCATGGTAGGATGGGGG-TGGTGTGT--ACCTAGAGCTCTAACAGCGACCTGTTTCAGAGGAAGTGGGTGAGGTCTAACCTTATGTAAACATATTTTTTTAAAAAGAAGTGGAAGg a score=48719 s hg19.chr6_ssto_hap7 3221720 1231 + 4928567 CCAAAGCCAATTCTGTTGCTGACCTGAAAGATGCTATTTACTTGGGGTGGAAATAGGATGGGGGAGGG---------------------CATTGGC-TTGACCTTACTTGGATAGCTCATTGTTTAAAAAAAAAACTCCTGGATCCTTCCTCTGGGGAGCTTGAGACAAGTGCACAAGTAGCTAGAA------GGTGGGAAATGGCGTGGACAGGTCTTGTAGGAGTCTGGAA----------------------GATGAGGGATTTGAGAAGGATGGAAAAGAAGGTGTTATGGGAGAGGGGGTGCCAAGAGGAAAGAGCCTAGGGGAGAGAGGGCTTGGAAA-------TGCAAGGGGCTG---GGGTA-----GACTTCAGGGATGCGCAAGGAGCTCCCAGCAGTCACTAAAGAGAAGACGTGAGGAAGAGGcactaccacttggtggctatgagtgtggacccaggagccatgctgcctgggtttgaatcccggctctgctgcttagtacctgtatgaacctggggcagctcacttaacctttgtgtgcctcagttccctcatctgtaaagtgggagtaacaacagaacctgtgtcataagcttgctgtgaggattaagtgagcacctacatttaa-gacttaaaaatactgtctggcac----TATGTCCTGCTAATATGAAGTCTTCCtcccccagaagcagacctggagacaagggttccagtgcagacagtgcattctggaggtgatcgcaagaaacatgggta-------gtggagtgtgatagagaaggaaggcagtcaatgaagggtgtgttatcaggcaaatttaccattgtgggtgagtggaggtcaatcccactcagga---------accctggagtggtg-----cagagttatcccatggtccagggtgagggagcccag-tatttata---ccaatc-----agtcattggttgaaggc----------------------cttaattctctgtcatttccagctttctgtgcacagatggtgcaggacaccaaaaacaatccttgggta--gagacagagatgctgcagctggaagtcagtggagcaccccagtgataaggcccaagggatatg-gtggggcaaggacagatccactaAAACCACCAAGAGGCTTGCAGAGCAATGCTGAATCCCCATCTAAAGTCACACATTAAGGCTGTGAACCAGGCCAAGCCAGACTAGTTTTCCAATTTGGGGGTTGA-------------------CCTGCAGTTGCCATAGAAGGTTGAGGGGTGGCAGATCCTAGGATGACCGCGAAGTCCATGCCCAAGTGGCCAGACTGGATAAGGAGTAGACTG s canFam2.chr12 4384204 1341 + 75515492 CCAAAGACACTTCTGTTGCTAATCTAAAGGATGCTGTTTAGTTGGAGTGAGAATAAGACTGGGGAGGGGTTCTCCTGTGGTATAATAACCATAAGCCTTGATCTTACTCATGGAGCTCATTGTTTCAACAGAAA-CTCCTGGATCCTTTGTC-AGGGAGGTTGAGATAAGGACACAAAGAACTAGAACTAGAAGGCAGCACAT--CCTGTGTGTGCCCTGTAGGAATCTGGAGAACTGAAGAGAACTTCCTGAAGGATGAGGGATTGGAGAAGAATGGA---GAAGGTGTCACAGGAAAGGGGACAACAAGAGGCCAGGGTCCAGGGGAAGGAGGGCTCAGGAAGGCCCAGTGCAAGGGGGTGAGTGGGGACCTGGGACTGGAGGGGAACTCAGGAAGCTCAGAAAAGCCTCTTCAGAGAAGATGTAAG-AAGATGCACTAATGCATCA-GCCTCTgagtgtggactcaggagccctgctgcctgggtttgaatcctggctctgctacttaacacccgtgtgaatctgaggcaaggcattgaacatttctgtgcctctgcttcccc-tatgtatactgggggcaatgacaaaacctgtgtcataggctttttgtgagggttaagtaagcccttacatataaagggtttagaatagtgtctgtcatgtaacaGTTCCTGTTCATAAGAAGTCttcttcc---agaagcagcctgtgagacaaggattcaaaggcaaatagtgcatttgagaggtggtgccaggaaacatgggtatggactgggaaagtgggatggggaaggaaggtagtccataaaaggtgtgtcatcaagcaaattcaccactgtggatgagtggagattagctccactgaggaccctggagaaccctggggtgcagaacgtcagagttgtcccgtggtggagagtgaataagctgggatatttatatgcccactcctcgcagtcacagattgaagcctgctttcggcgggggggaggggcttaattctctggcattcccaggtttctgtgcgtaggtggagcaggacactagaga-aaccttcagaaaaagagatagagacattgctattggaagtcgATGGCCCTCTCCAGGGGCCAT-CCCAAAGGATGTGAGTGATGCAAGAACAGATTTCCTACAAACATAAAGAAGTGCGTTGAGTAATATTGAATCCATAACTAAAATCACACAGTA------CGAACCAG-----------TTAGTTTCCAAAACCAGGGGATGATCTGAAAATGGGAATCGGCCCTGCAGTTGCCAAGGGAGGTTGAGGG-TGGCAGATTCTAAGACGTTAGTTAGATCCATGCT-AAGTGCTCAGATTGGACAAGGAATAGACTG a score=4219 s hg19.chr6_ssto_hap7 3222990 106 + 4928567 TCCTCAGAAATTTTCAGCTGCAAGGTGCTGAGCTCTCCAGGGGAG-AATAAGGCATCCTGAGAGGCCATCAGAGCATCATTTCTGATTTTTAAACTCTGATTAGGGg s canFam2.chr12 4385803 101 + 75515492 TCATATGAAATTTTCA------AGGAACTGACTTTCCCATGAGAATAGTAAGGCCTCCTGAGAGGCCATCATGTCATCACTTCTTTTTTTTAACGTGTGACTAGGGG a score=20498 s hg19.chr6_ssto_hap7 3223429 570 + 4928567 ATGAAGTACAGAAT-TGGGGTATTGGTTTTTTCTCTTTGGAATTGTACCCTTGGAAGCAGATATTAGAAGCCTAGAATTGATAAGAAGAAATTTGGACAAGATGGAAGAAGCTGGCAGGAGAGGCATGTCTGTT-TTTTAGATATTATTCACCTGCTTCCCTCTACCTGGAGTGAAAACACGGTTACATTTGCTGGGCTTTTGAATGGTACAAGAAATAGAGAAGCCAAGGTCGCCCTCATCTGGTGGG-GTCTACTGAAAAGCTAATCGGGAG--TGCCGAGGGGAATAAAGGTCTGGCATCTTTAGCCCCACAGG---TCAGGTCATGGTCCTTCCACATTCGACTGGGCCTCCTGGAGA-----------------------------------------------------------------------------------GCTGA----------------------------------------------------------------------CAGTGGAC------------------------------TATAACTGACTTTTTGCCAATGGAATATGAATGGAAGAGTGGGGTGGGAGGCAGACTTGATGGAGACCCTGTTTCAACCATGCAGACAAGGACAATTTCCAAAGGCATGAACCACAGATGGAAGGAAGCTGGAGGCCTGAAGGAGGCTGATGAGCA-----GCTCTGCCAGCCAGGGCCACACACGCCATCTCAGCCTTGTCTGCTTA s canFam2.chr12 4385904 752 + 75515492 ACGAGTTGCAAAGTATGGTGTGTTGCTTTTTTCTCTTTAGAATTGATCCCCTGGGAGTATGTATTAGAAGCTTTGAATTGTTGAGAAGAAATT-GGGCAAGAGGAAAGACACTGGCAGGAGTGGAGGGGCTGTCCTTTTAAGCATTATTTACCTCCTTCCTTCCATCTGGAGTGAAAACA---TTGCA----CCAGGCTTTATAATGATGCTAAAAATAGACTAGCCAAGGTCACCTTCACCCAATGGGAGTCTACTAAAAATCAACTTAGGAGCCTAAAGAGGGGAATAAAGATCTGGTGTCTTCAGGCCCAGAGCCTCTCAGGTCATGGTCCTTCCACTCTGGACTGGGCCTGATGGAGACTTGGAACAGTTACCCAACTCCAGTGACCCATGTCTTTGTTCACCTTGATTTGCCATTATGCAATGTAGCATTTCCGTGTGCAGCTGATCTCCTCTCTTTTGTGCATTTTTGTCTCCCAAAACTTTCTAATATGGTATTAGAGTTCTAGCTGTGTATGCGGTAGGCAAACTAGAGACCACATTTCCCAGCCTGTCATATAACAAAGTCTTTGCCAACAGAATATGAGCAAAAGAG-GGACTGGAATGCAGACTTGATGGAGACT-TCTTTCGACCATGCAGACTAGGGTGATTCTCAATGGCACGG----CAGATGGAAGGAGCCTGGGGTCCTCAGTGATGCTGATGAGCAACTGTGCCCGGCCAGCCAGGGCCACCTTTGCCATATTAGCCCTGCCTGCTCA a score=21239 s hg19.chr6_ssto_hap7 3224635 460 + 4928567 TCTGAGGCTCTTATTTGAAAGTGCAGCAAAATTCTATCTTATTTAAGTTACTGTATTTTAGGGTCTCTTTATTACAGAAGTTTAACGTGTATCCTAATAAACACACTTCTCTGAGTGTTGCCTTTGGCTCTCACATTGATTTCTTGCTAGGta----tatcagttagacatg-gtttggctttgttataac-caagctagaataacagcagcttaaatggtctgagcataagtggtccaggtcaatcctattagctctacaggattggagagcagggcctctttaattttgtttctttatcatcatccacatgtgacttccattttgtgatcta-ggtggctgttccagagtccaccattctgtccacattccagctggtgggaagggaagaagTTTTATACATTGAGGAGTAAACACTTCTCCTTAAGAACATACTCTGTGGGCCCA---GAAAACTTGGGAGTTTTAT s canFam2.chr12 4386657 456 + 75515492 GCTGAGGGTCCTATTTGTGAGAGATGCAAACTTCTGCCTTATTTAATTCACTGCATTTGTGATTGTCTTTATCACAGCAACTTACATTAGACCCTGATGAGTATATGTCTGTGGGTGTTGCCTTCGGCTTTCATACTGATTTCTGGCTAACTAAAtgtattagttagatacatgtttggc--tgctaaaactcgggctaaaataacagtggcttaaatgggctgagcttaaaccatccagggcagttatgatagccctgcaggattagggagcggggcttctttaattttg----tttgtcatcatcaacatgtgacttccatcttgtggtctagggtgactattttgtcttccaccagtgtatctgcactccagccagtgggaaggggagaag----aaaaattgaggtgtacac----cccttTAAGAGCATACCCCATGGGCCCAGTGGAAAACTTGGAAGTTTTAT a score=5922 s hg19.chr6_ssto_hap7 3225095 119 + 4928567 TACTTAAGCAGGAAGAGAGAATGAATTCTGCCACACTGTGCCAAGTTGATGTAGCTCAACAAATACTGGGAAAAACTCATGAAAGAAAG--GCCCTTTCTTTTGAAGGCAGCTGTTACATA s canFam2.chr12 4387319 118 + 75515492 TACTTAAGGAAGAAGGGGGAATGGATTCTGACAGAC--TGCTAAGTTT-TCTAACTCGACAAGTGCTGGGAGAAACTCACAAAAGAAAGTCACCCCCTCTTTTAAAGATGGCTTTTACATA a score=23244 s hg19.chr6_ssto_hap7 3225214 608 + 4928567 TTAGTTTG-----ATGGCTTTAA-AAGGCACCCAAAGTTTAGTGATTTGAATGTTCAGTCAGGTTAGGCTTCATTACGTTCTGGTAACCAACAACCTAGAAATATTTGTTGCCATAGGAGGGCttacaaaatatagccatcagtctctcctattctgatgtgcctgcccctttgccgtgtgactttgccattcctcctatcaagaggtaaattctatgcctccagtcttaaatctgggctgaccttgtgatttgctttgaccaatagaatgtggcagaagtgatgttatgtgacttttggggctaggcctcgagagaccttgcagcttatgttttggattcctcagaa-gttgtcctgagactgcc-atgCTATGAGGGCTAGGGAGGAAGGACC-----------------TGCTGTCCTACTGTTA--ACTGAACTCAGCCCCTAGCTGACTGCCGCTGCATGG------------AAGATCAGCAGAAGAACCTTCTGGCCAAT--ATGAGAAAGAATAAATCATTTTT-AAATTTCCTACATATTGGGTGG--GTACTTTTTTTCCTGCATTAGTAGAAATGcaatgaattaaaataacaaa----ggtttatttttt---ggtcatattactta----tccactgagagtcagccgag s canFam2.chr12 4387878 649 + 75515492 ttagtttgtagcaGTGATCTAAAGAAGGGCTTTAAAACTCAGTGGTTTAAGTATTTAGCCAGGCAAAGATTCATTATGTTCTGATGAC----AACTCCCAAATCTTGGTTGCCATAGgtgttttt-caaaatatgggcagaaatctctcctatactagtgtggatgcctctttgcagtatgactttgccagtcttcccatcgtgaggttgggttt---cccccacccttaagtctgggcggccctt-tgatttgctgtcaccaatagaacatgatggaagtgatgttatgtgatttctgaagatagggctcaagagaccatgcagctt-tgctttggatctcttagaatgctttcctgaggctgcttatgc----aaggctagggatgaaagaccatgggacagagAACTCCCGGTGTCTGACTTCTCCTGCTGAACTCagccctcagttgagtgcagctgcctgagtgagcccaggcaagagcagcagaagaaccaccaggctaatgcatgagaaggaataaatcattttttaaatcctctatattttgggTGGCATTTACTTTTTTCCAACAGCAGTGGTGATGTAATAGATTAAAACAAAGATTTCTGGTTCttttttcctcgctcatattacatacatatcctgtgaggatcagcagag a score=11322 s hg19.chr6_ssto_hap7 3226131 229 + 4928567 actgtgctttcgatatcacccagggatcttggctggtggagcagccaccatctcagacgttaccatacagaggggaagagcagggtgaagactacattg--------agcttccatcaggaagtgatacatatcacttgtactcacatcttattggctaaaacaagtggctggggaaatcctatcctaccatgtgattgaaagaagacaaggctacagtatttgtgaacatccttaa s canFam2.chr12 4388527 230 + 75515492 gttctgcttttggtgtctctcaggaatgtaagacgatggagcagccagcatctcaaatgttgccatactg-ggggaagagcatggtgaggactgcattggctcatgaagcttccatctggaaacagtacacgtcactt------acatttcattggccagtgcaagtagataaggaagctcaatcttactatgtgaccaaagggagacaaagccagaatatttgtgaacatccttaa a score=22099 s hg19.chr6_ssto_hap7 3226361 509 + 4928567 TACCCCCCACCTTTACGATagtttatttctctcttgtaacaatctaagtggctgtgcagggctggtatgacatcaacactgtgtcagacacccaggctcctctgtctgtttgctctgtcatccccagcatgttgccctcatcctcctggtggaagacggatctccgctaggtttatattccagcccatgaaaagaaaagg-cacactgcctttttattttagggaca----taacttggaaatgacatacataagttctactaacatcccattagccagaaccaagtcacctggctacctagctgcaagggaagctaggaaatatggtctttagctgggtgactgtatgttcccctaaccatctcttactgt-ggaaggagggagaaaagatacttgaggggcaggggaggcactagcagctctgccacaGCAGCCACTTTGGAGTCCCTAACACCA-GGATGTCCTGATTTTCATGCACT--TAGCCCTGTCCAAGGGGAGTCTCAATTTGTGTACt s canFam2.chr12 4388962 480 + 75515492 TATCCACCACCCTTaagatagttt----ctctctggtaacaatctgagtaggtagacagggctgatatggcatcaaca--gtgtcagggatccaggctcctctgtctgcttgctctgtcatcctcaggatgttgctttt------------------gaattaccatcagatttctattttagcccatggaaaggggaggacaca-------tttaattttggaatacatgtaacttggaagttacatgtatcagttctactcaattcctgttggccagaaccaagtcaccca-ttatttagctgcaagggtagctgggaaatgtagtctttagctgggtgactgtgtgtctcactaaacatcttt--ctgtaggagggagagagcacagatact--atgtgccgggaaggcaccagcaactctgccaca-CAGCACCTCTGGGACCCCCAACACCAAGGGTGTCATGGTCTTCCTGCATTGTCAGTTTCATCCAAGGTGGG-CACACTTTGCATATG a score=2872 s hg19.chr6_ssto_hap7 3227281 49 + 4928567 TAAGGACTCACTTATAAATCAAAAGGGTTTTTACGAACCTAAATGATCA s canFam2.chr12 4389448 49 + 75515492 TAAGAAGTTATTCATAATTTGAAAGAGTTTTCACAAACTTAAATGATCa a score=111609 s hg19.chr6_ssto_hap7 3227491 2483 + 4928567 AAAGGCATATCCCAGCCCCCGCAAAAGTTTTATTCCTTTGAGTAA-CCAACCCCAAATGTATTTACTTTGCCAGTTGGGAATTTCATCTACTAGACTTTCCGTAAAAATGTTGTAAACATTTTTCCTGTCTCCAAAACTAAGTGTTGATTTCATTTTTTCCACCTAGATTATCTCTAGGGAAGGATTGTAGGGAATAAAAAAGTATTGTCAATCTTCCTATTTATCAAGAAGTTCTAAAAAAATTAGTTTCACCCCCCTCGGAAGTTTATCTTCAAGAAGACAGAACTGTTCTAGGCTCTCAGGAAGTAAAACCCACTTGGTACAACCCAAAAGAACACTAAAACTTTACTTAAATGAAATATTTTGCAATATCTTGGATGGTTTGTGGGTTTGTGTGCTTTAGACTATTGACTATTCACACAAGAGCAAGGTGCATGTGTGCACACACGAGCCCAAATATGTGTTTGCCTGCGTGTTTGTGAGCATGCGTGTATGGTGCACATGTGCACGCATGGGTGGGTGGAGCGTGGGGGCAGTACACAAAGCCTGTGGGGGAGATCTATTGACCCTATAGATATATTAGCATCAGGGAGACAGGGCAAAGGTTTCACCCT-TCAGTTCAGTCCCCAATCCCTGCTTATTATTTCCCTAACAGAAGACCATCCCCCTTGCCACTCCCTGGTTTTTCTTCTCTGGCAGCAA-TGAAGCAGCTGCTGACCCAGCTCTAGTTTTCGGGAAGTCAGATGACCTTTTCCCTCCCGCGGCTCTCTACCTCTCGCCGCCCCTAGGGAGGACACCATGGGCCCACTGATGGTTCTTTTTTGCCTGCTGTTCCTGTACCCAGGTAGGAGGCAGGGAAGGGGGAACGTCAGGGTCCTGTGTGTGAGGTTGGTGCT-CCCAGCTTGAATTCCCATGTGTGAA--ACAGTCTCTTTTGCTTTCCTTTTCTCATCTGTGTCTTCCTTCTTTCTCCATTGCTGTCTCCT-TGTTCCCACGGCTCTAGGTCTGGCAGACTCGGCTCCCTCCTGCCCTCAGAACGTGAATATCTCGGGTGGCACCTTCACCCTCAGCCATGGCTGGGCTCCTGGGAGCCTTCTCACCTACTCCTGCCCCCAGGGCCTGTACCCATCCCCAGCATCACGGCTGTGCAAGAGCAGCGGACAGTGGCAGACCCCAGGAGCCACCCGGTCTCTGTCTAAGGCGGTCTGCAAACGTGAGGCTCCCTGTGGGCTTTGCTCAGGGTGCTACACcaggggccaccccagaacttttgtttaggagttgctcagggtgggacttaacctgacta--------------gatggcaaagttgcttttgcagagggcttttcaaaatatccagaaaatgtcaattgccagtagcaaggaattgggaacaggtcttgatggagactgtggggtactaaagccAGGGATGACTTTTTATGTA--------CAATTGACTGCCTAGTAGTGACCATTCAGAACAGATGCTGAATGGTCCTGGAGTC----------CTCTAG--------------ACATCTgaggatcccaaggggagtgtctggggaggccacggccctcaggagactgagggaagtggctatttatcaatcagtTCGCttagactctgtgaaattggcaatattcaatcagttgccaaaaacagcaatt-tcacatgttgcaacctaaTATTTCAGTGTTTTGACAGCCAGTTGACCATTCCCATGCATTCCAGCATAAAATCACCTGCTTAATCCCCAGCCCAGGTGTTATCCATCCAGTCCTATATTCCCCACCCACTTCCTCTCTCTCCAGCTGTGCGCTGTCCAGCCCCTGTCTCCTTTGAGAATGGCATTTATACCCCACGGCTGGGGTCCTATCCCGTGGGTGGCAATGTGAGCTTCGAGTGTGAGGATGGCTTCATATTGCGGGGCTCGCCTGTGCGTCAGTGTCGCCCCAACGGCATGTGGGATGGAGAAACAGCTGTGTGTGATAATGGGGGTGAGTTCTCTGGCTGATGGGCTACACAGGGGGCTGGGGTCTCCTGGGGAACCCTGGGGCCCAATGTGCATCCAGGAAGCCTCTGTGGGGATAGGAGTCTGTTGTTCAGTGTGCCATAATAATATTCCTGGATTTTGGTAAATTGAGGTCTACAGGTCACACATCACAAGTCTGCAAGGGCCAGGCCCCAGGCAGCTGGTGCTAAGCTTCAGATGTAGCATAAAGCCTCCACACACTCTGCCTGGCTTTTCTAAGTGCCTCAAAGCAAGACTTCATATTCAGGCCCCACAGATTGTTGTAGGGAAGATATGCTGGGAGAGagtcaagtactgtgct----ttaatgccttgcctttaaagccaggtttgggttccaagccctactctgactttgacagactttgggaaggctatttaacctttctagccctcagttttcccatctgtaagacaaggatagtgagtgctgacc-------tgagattgccatctggattaaatgagttgacattagtaagcatatacaacag s canFam2.chr12 4390290 2372 + 75515492 AAAGGCACATCCAAAATCCAAAAATACTTTTGTTCCTTTGGGTAAACCAATCCCAGACTTATTTATTTTATGGGCTGGGAATTTT-TCTACCGGACTTTCCACAAAAGTGTTTTAAACATTTT-CCAGACTCCAAAACTAAGTGTTGATTTCGTTTTTGTC-TTTAGATTCTTTCTGGGGAAGGGTTGCAAGGAATAAAAAG--ATTGTGATTCTTCCTATTTAGCAAGAATTCCTAAGAAAATTAGCCCCAATCTCTT-GCAGGTTTATGTTCAAGAAGACAATACTATCCCAGGATCTCAGGAAATAAAGTTCACTTGGCAACACCTAAGAGAAAACTGAAACTTTACTTAAATAAATGATTTTGCAATATCTTGGATGGTTT-TGGGTTTGTGTGCTTTAGACTATA-------CATGCAAGAGCA-----------------------------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-----------------tAGGGGGGTAGAGACTGAGAGCAGTATGGAAAGCCTATGGTACAGAGCAACTGACTA---GGATATGTGGG-GTTAGAGA-ACTGGACAAGGGCTTCATCCTCTCAGCTCAGCCTCCAGTCTCTGATTATTTTTTTCCTGCCAAGAGCACATCCCCCCTGCGGCTCCCTAGTTTTTCTTCTCTGGCAGCAAATGAAGCAGCTGCTGAGTCAGCTCTGGGTTTCGGGAAGTCAGATGACCTTTTCCCTCTGCCGGCTTTCTGCCTCTCTCTGCCCC-AAGGTGGATACCATGGACCCACTGATGGCTCTCCTTTGCCTGTTGCCCTTATACCCAGGTAGGAG-CAGGGGAGAGGGA-TGCTGGAGTCCTGTGGAAAAGGCCTGTACTGCCCACCTTGGGTTCCCTCTTGTAAATGCCAATTTCTCTGGCTTTTCTGTTCTCATCT------------TTTCTCCACTACTGTGTTGTGTGT---CATGCTCACAGGCTTGGCTGCAGCCGCTCCCTCCTGCCCTCAGAACGTGAATATCTCCGGTGGCACTTTTACCCTCAGCCATGGCTGGGCCCCTGGGAGTGTCCTCACCTACTCCTGTCCCCTGGGCCGCTACCCATCCCCAGCATCACGGCTGTGCAAGAGCAATGGACAGTGGCAGACCCTGAGATCCACCCAG---CTCACAAAGGCGGTCTGCAAACGTGAGGCTCTCTGTGGGCTTTGCTCAGGGTG-------------------------------------------------GGGCTGAACCTGACTACATGGTGTGCCAGGGGTGGCCAAGCTGTTTTTCCATAGGGCTTTTCAAAATAATGAGAAAATGTCCATTGTCCATAGCAAGGCATTAGAGAAAGGCCTTAATGGAAATTTAAAAA----AATACACGGGGTGATATTTTTTTTAACATTTAACAATTGACTACAGAATACTGACCATTCAGAATGGGTGCTGGAGTCTCCCGATGCCAAATGTTACCCTTTAGTGTCCATTCAGGGGGTATTTGAGGAACTCA-GGGGAGAGGTTGAGGTGTCCATGGCCCTCAGGGTGCTGAGAGATGTGGTTATTTATCAGTCTGAtaggttgaacagtgtgaaattgccaatattcgaccaattGCCACAAGCAGTGATTGCCACAAGCAGCAACCCAATATTT--------TGACAATCAGTTGGTGACTCCCATGCATCCACGCCAAACCTTACC------------ATCCCAGGTGTTTTCCATCCATCCGTGTAGTCTCATCCC--CTTCTCTCCCTCCAGATGTTCGCTGTCCAGCTCCTGTTTCCTTTGAGAATGGTATGTTCACCCCGAGGCTGGGGTCCCACCCTGTGGGCAGCAACCTGAGCTTCCAGTGTGAGGATGGCTTCACCTTGCGGGGCTCGGCTGTGCGGCAGTGTCGCCCTAATGGCATGTGGGATGGGGAGACGGCCGTGTGTGACAATGGTGGTGAGTGCCCTGCCCTCATAGCTGCA---GGGGCGGGGGTCACCCGGG-AACCTTGGACTCAGATGTGTGCTCATGGGGCCTGTGTGGGGACAGGGGCCTGGTGTTCTG-ATGCCAAAATAATATTCCTGGATTTTGGTTAGTTGAGGTCTACAGGTCCCACATCACCAACCTACAGGAGCTGG--CCGAGGCAGTTGCTGCTAAGTTTCAGATCCAACGTAAGGCCTCCACACAGTCTGTCTAGCTTTTCCCAATGCCTCAAAGCAAGA-TTGGTATTCAGGCCCAATGGGCTATTGTACTGACAACGTCCTGAGAGAGCTCCtagtgctgtgctgaattcagtgccttgcctctggagccag-ttcgggtcc--aacctgggtcggacttggatagcttttgggcaggctctttaagctctctatgcctcgattttcacatct--caaatagggatggtaag-actggccacgatattagggcttctctgtggattaaatgagttgacattaataagcacctagagggg a score=1781 s hg19.chr6_ssto_hap7 3230588 33 + 4928567 AGCCCCTGGAATCTGATAAATGCCATGTACACt s canFam2.chr12 4392851 33 + 75515492 agtccctggagtttagtaaatgACACATATGCT a score=10678 s hg19.chr6_ssto_hap7 3231061 229 + 4928567 TTGTCATAGTTATTGCTGCCCCTGTGAATGGTGAGGGGCTCTGCTTGGCAGAAGTAGGGCTCCTAGGATTCCCTGGAGCTGCATTTGCCTGTGGGTTTGGGAGCTTCTTGGATCATGGTTCTTAGCACATCATACAGAAGACACGGAGTCCACAAGATGGCAGGACCA--CCTTCACCTAGTGGCCCAGACCATGGATCCCCACTCATGCCCTTGGGT-TTTGGCAAATGGC s canFam2.chr12 4392885 214 + 75515492 TTGTCATAGTTATTACTGCTCCTGTCAATGGTAAGGAGCTCTGCTTGATAGGACATGGGTTTCTAGGATTCTCTGG------------------GTTTGGGGAGCTCTGGAATGATAGTTCTAAGCACAGAAGACAGAAGACACAGAGTCCATGAGATGGTAGGACCATCCCATCACCCAGTGGCCCAGCCATTGGGTCCCTATGCATATTCATGACTGTTTGCCAAATAGC a score=7383 s hg19.chr6_ssto_hap7 3231675 124 + 4928567 cttttttattgctgtgtagtattccattatatgggtatattacaatttatccattcccctcctgatggacatttggattatttccagtttggggccattaggagtaaagctctaggaacattct s canFam2.chr12 4393578 122 + 75515492 attttttattactgtgtagtttt--attatacaaataggttacaatttatgtgttctcctcttgatgggcacttgggttctttccagtttgaggctattatgagtaaagccctatgaacatcct a score=3804 s hg19.chr6_ssto_hap7 3233658 85 + 4928567 atgtgattt--tggtacatgtatgcacttgcttctcttgagtaaatgatctaaatgtggaattgtcacatcacaggctggcatatgt s canFam2.chr12 4393703 87 + 75515492 atgtaacttgttggtgcacgtatgaatttgcttctcttgagcatgttgtcttggaagggaattattgggtcacaggttggcataCAT a score=64869 s hg19.chr6_ssto_hap7 3233799 1415 + 4928567 gagtgccagtcgctctgcatcctctccaacacttggaattacctgttgtttcagtgttagccgttttgatgggtgtgtagggatgcctcactgtggtttatgaaatataaatgttctctgaAGGAGTGGAGGGACCATCAGCTGACTTCTTCCCTGGGTCTCTGGG---GGCTCT----GGGACAGACA-TGG--GTGCATCCCTGGGTTGGAACTGGGAAGCTTCTGCTGGCAACTGAGGCC-GCTGAGGAGGCAGAGCCTGA---------TGGGAGGGGG----CTACTCACCTCTGCCTTCCTTTGTTCACTCGCAGCTGGCCACTGCCCCAACCCAGGCATTTCACTGGGCGCAGTGCGGACAGGCTTCCGCTTTGGTCATGGGGACAAGGTCCGCTATCGCTGCTCCTCGAATCTTGTGCTCACGGGGTCTTCGGAGCGGGAGTGCCAGGGCAACGGGGTCTGGAGTGGAACGGAGCCCATCTGCCGCCGTGAGTAGCT----GCCCTG-CCCTCCTGAGATTCCTCGGCACACCCGGCCACTGCCCCGGCTGACTCCTGTGTGGCTCTCCCCACAGAACCCTACTCTTATGACTTCCCTGAGGACGTGGCCCCTGCCCTGGGCACTTCCTTCTCCCACATGCTTGGGGCCACCAATCCCACCCAGAAGACAAAGGGTGAGTGTTTGAGGTGGGGTTTCTGGTTGAGCAGGGTGCTGGATCTGGGCCGGAGCAAGGGAGGATGCAACCTTCCTGGAGGC--CAGGAGCCTTGGTG-GGCTCAGCCA--CTGAAAGG----GAGGGAGGCAGAGAAGCTGGACCTGCTTGGCGAGAGCGCAGGA---------AGG--AGGTGGGGATCTGAATCCTCCCCTTCCACATTTCTCC-AGAAAGCCTGGGCCGTAAAATCCAAATCCAGCGCTCTGGTCATCTGAACCTCTACCTGCTCCTGGACTGTTCGCAGAGTGTGTCGGAAAATGACTTTCTCATCTTCAAGGAGAGCGCCTCCCTCATGGTGGACAGGGTCAGGAATCAGGAGTCTGCCTGCAGCAGAGGCCTTCCTGTGCTCACTATCTCTCTCTGTCTCCTTCCCCTCCTCAGAACCCCACTCACAGCCCACCTCCTCCAAGAAGTCTTCTCAGATTATACTCATGCCATGTAGGAATCATGAattcaatttatacaatcataatttttattccacaagcactgttgggacact---------------------------------------gtgctggg-gctgggcgacagcaaagatggaaaggctgaggtcttactttccaggaattcatcatctagaacagtggtctccacagaaaggta-gtgagataacccacaggagtgaagcagaaaaatactggTGCCCCTGTGGaataattt------aaatcagattaataatttaatatttaataatttCCTTTTAAAACTTCAACATTTTGTGCAGGCTTTAAAATGTGTGTGATA s canFam2.chr12 4394068 1482 + 75515492 gcgttctggctgctc-acatcctctctgacacttggaatgagccatattttcagttttagccatcctggtgggtgtgtagtgatgcctc-ctgtggtttatgaagtgcaAATATTATTTGTGGCGGCAGAGGGCTCCTGGGTCAGCACCTTCCGTGGG-CTCTGGGATGGGCTTTCCTTGGGAAGCACGGTGGTGGTGTCTCCCAAGGGGGAGGCCAGATGGCCCGCAGAGGCTCCACGGGCCTGGGGAGGAGGAAGAGCTAGAGGGACAGGGTGGGTAAGGGTGTCCCGCTCACTGCCATCTTTGTGTGTTCACTCCCAGCTGGCCACTGCCCCAACCCGGGCATCCCGGTGGGTGCCGTGCGGATGGGGTCCCGCTTCGGCCTTGGGGATAAAGTCAGCTACCGCTGCTCCTCAAATCTGGTGTTGACGGGGTCTGCGGAGCGGGAGTGTCAGAGCGATGGGGTCTGGAGTGGGACGGAGCCCATATGCCGCCGTGAGTAGCCAGCCGCCTTGACCCTCCAGGGACTCCCGGGCAC-CCCACCCCTGACCCTGGCCGACCCCAGTGT--CTATTCCCACAGAGACCTACTCTTACGACTTTCCTGAGGATGTGGCTCCCGCCCTGGGTGCTTCGTTGTCTCACCTGCTTGGAGCTACCAACCCCACCCAGAAGAAAAGAGGTAAATGCTTGAAGTAGGGGC--------AGCAGGGTGCTGGGCCTGGGACGG------GGAGGA-GCAGACTCTGCAGAGGATGCTGGGGCTTTGGCAAGGCTCAGTGGGGCTGAACTGCTCGGAGGGGGGCAGGGAGGCCTACCCC---TGGCAAGAGGGAAGGAGTATGGGGAAGGCAAGAGGAAGATGTGAATTTGCCCCTTCTACGTTTCTCCCAGAGAACCTGGGCCGTAAAATCCAAATCCAGCGTTCTGGTCACCTGAACCTCTACCTGCTCCTGGATGCCTCTCAGAGTGTGAAGGAAGAAGACTTTCACGTCTTCAAGGAGAGCGCCATTCTCATGGTGGACAGGGTCAGGGAATAGGGGCCTGTGCACAGGAG-GCCCTTCCTACTCTCGCTGTCTCTCTCTGGTTCCTTCCCTTCCTCAGAACTGCACTCACAGCCCACCTCCTCCAAAAAGTCCTCCCAGATTAAGTGCATGCCATGCAGGAATCATGGATTCCATTTATAAGATCCCATTTttcatcccacaaacagtcctggggcaccttgtatgtgtcaggcaccatgctgggtgctgggtgctgggtgctgggtgctgggGCACACCAAAGATGAACAGGCTGAGGTCCTGTTTCCCAGGCACCCATCATCTAGAGCGGTGGTCTCCACAGGAGAATATACAAAATGATCCACTAGGGTGTGACAGATTACTACTGGCATCCTTGTTGAATAGTTTTAAGTTAAATTAAATCAACAAATTAATATTTAATACTTTCCATTAAAAATTCTAATTTTTTGTG-----TTTAAAAGGTGTATAATA a score=11964 s hg19.chr6_ssto_hap7 3235542 379 + 4928567 GAAGTTTGGAAGCCACTGGTTTAAGTTCCTCGCCAGAACTTTGTTTTGTAATTGTGCTTTTCACAATACTTCATGTAACATTATAGATG-GTTTTCCCTCCCAGCTACATTTTAAAGAGGGCAGTTTCTGTGCTCTCTTGGGACTC----AAAATTAA--GTAACTCATTGCACTGCGAGGCGGCAACACACACCAGTTGgagcagtgattgagaatcatgtg-acacattcagatcccacttccacctcctcctcatggtgtgatgggggaagggggacaaggcaacatacctcagtttccttatccataaaataggggtcatcatgcccc-tcacagggt------------------ggagtgaagaGAGTCTGTCAAAGAGAAAGA-TGTTCAACAAAGGTTT s canFam2.chr12 4395642 370 + 75515492 AGAGTTTGGAAGTCACTAGTTTAGATTCCTTGCCAGCGCTTTGCTCAGTAATTACACTTTTCACAATAGTTCATGTAG----ATATATGTGTTTTTCTTCTCAGTTACATTTTAAAGAAGGCAACTTTTAGGCTCCTTGAAGTCTCTCCTAAGACTAACAGTAAC-CACTAAGCCGTGAGGCTGCACAACACGCCAGCTAGAGATGTGCCTCAGATTCGCGTGGACAGGTTCAAATTTGACCTCCGCCTCGC-------------------------------ACAACAGgcctcagtgtcctcatctataaaacaggggccatctcgccccctcacagaattgatgtgggcatacaatgggagcga-gtgagcctatcaaacagagtgcctggcTAACAAACGTCG a score=34413 s hg19.chr6_ssto_hap7 3236245 725 + 4928567 CCTAGCTTCTTCCTAACAGCCATTTCCTAGTGTCTCCCC-TGGTCCTTGCCTCTGTCGGTCTCACTCCAGTTTCTCTGCCTCCTCCAGGGCCCTTTGTTTGCTCTCTTACCATCTCCCCTTTGGCTTCAGGGCCCTTTACGCTGCCTCTCACTTGCCCCGCACAGATCTTCAGCTTTGAGATCAATGTGAGCGTTGCCATTATCACCTTTGCCTCAGAGCCCAAAGTCCTCATGTCTGTCCTGAACGACAACTCCCGGGATATGACTGAGGTGATCAGCAGCCTGGAAAATGCCAACTATAAAGGTACGGGTGTCATCACGTGATGGTGATGAGAGAGGAGAAGATGGACC-----CTCTCAGGGCCTGCAAACAAATTCTGGATGAGTTAAAAAGAGAG--TGAGGCCTCTTGGTGGCACCTGAGTCCCACGAGTCTGG---------------------GGTAGTTTCAACGTCCAGGGTTATGGTGGGGGAGTCC-AGCTGCCCCCAGCTCATAGCTCATTCTGAGATGCTGCAGGTCCAAAGACACTGTGCAGGTCTTCAATTCCTTCCAGTTGCCAAAACCACACTGTCTGGTTTGCATGGCTGCACACTGCCATCTCCCCATGTCATTAGCCACCCATACACCATGTAAAGTGCCTGGTTGGCACTTAGCAAATGGCTGAAGCCACTCAAGGTTTTGGAAACCTCATCTTTGAATCTTGGGACTTTAGTGTGGTCTTGGATTGGGGTTA s canFam2.chr12 4396016 726 + 75515492 CCTGGCTCCCTGCGAGCAGCAGTCTCTTAGTGACTACTGGTGGCCCTGACCTCTGTAAGTCTTGGCCCAGGCTCTCTGCCTCCTCTGGGACCCTTGGTTTGCTCTCTTATTCTCTCTCCTTCGGTTTCAGGGCCTCTAATGCTGCCTCTCACTTGCCCTTCTCAGATCTTCAGCTTTGAGATCAATGTTAGTGTCGCCATCATCACCTTTGCATCCAAGCCCAAAATCATCATGTCTGTTCTGAATGACAACTCCCGGGATGCGACTGAAGTGATCAACAGCCTGAACAAGGTCAACTATAAAGGTATGGGTGTCATCAAATGAAGGCGATGAGGCAGGGGTCAAGGGACAATGAGCTCCCTGTGCCCGCA--CAGATTTTGGACAAGTTAGAGAGAGAGAGTGAGTCCT-TTGGTGGCATTCTAGTCCCAAGACTCTGGAACTCATGTTCCTCTGGGGGAGGTGGCTTCCA-GTTCAGGTTCATGTCAGGGGAATCCCAGCTCCCACCAGCTCATGGCTTACTCTAAAATGCTACCCACCCAAATGCATTGTGCTGGTCTTTGGTTCTCTCCTGATGCCAGAACCA-----TGTGGCTTTCTTGGCTCAACACCGTAGTCTCTCCATGCCATTGTC----------------AAGGTGCCTGGGTGACAGCTAGCAGGTGGCTGTAACAATTT----CTTTGGGAACCCCATCTTTGAATCTTGAGGCTTTAGAGTGGCCTTCAGTGGGCATTA a score=6948 s hg19.chr6_ssto_hap7 3237297 108 + 4928567 GCAATGAACATTTCTAAGGTGGAAAGGCTTTTAAAGTTTGAACAAGCAATGATGCCACATCTCTATCTGAATGGCAAATGTCTGAGTTTATCAAAACAATCGATAAAT s canFam2.chr12 4396958 107 + 75515492 GCAGTGAACATTTCTAAAG-GAAAAGACTTTTAATGTTTGAACAGGCAATGATGCCAAATCTCTATCTGGATAGAGAAGGTCTGGATTTATCAAGCCAGTTGATAAAT a score=21772 s hg19.chr6_ssto_hap7 3237710 344 + 4928567 GCATTTCCAATAATTGGGGGAATAGAGTGATTCCCTACCCCTAGGTGGTAGGTGGGAAGTTTCTAAGAGAGTCCTTCCTTTTGGCATATTCCAGATCATGAAAATGGAACTGGGACTAACACCTATGCGGCCTTAAACAGTGTCTATCTCATGATGAACAACCAAATGCGACTCCTCGGCATGGAAACGATGGCCTGGCAGGAAATCCGACATGCCATCATCCTTCTGACAGATGGTGGGTATCATGGTCTCTG--AGTGTgtctggaatagtggaaggggcaccaatatggggtcagaagccctgaattctgattctccctctgccTGCCACTTTGGGCCCCAGt s canFam2.chr12 4397065 338 + 75515492 GTATTTCCAATGGTTGGGAGAATAGGGTAATTCCTTTCTCCTAGGTGGTAGGTGGGGGCATTTCTAGAGAATCCTTCCTCTTCACATATTCCAGACCATGAAAATGGAACCGGGACAAACACCTATGCAGCTTTAAATAGTGTCCATATCATGATGAATAACCAGATGGATCGCCTCGGAATGAAGACGGCGGCCTGGCAGGAAATCCGACACGCCATCATCCTTCTGACAGATGGTGGGTATCGTTGCCTCTGCAAGTGagtctggcacagtggaaggaccaccagtgtagggtcggaagacctgcatgttgattctccctctgcc----actctgggcc----t a score=1138 s hg19.chr6_ssto_hap7 3238185 28 + 4928567 CAGTTTCTTATTTATAAAATAGGGCCAg s canFam2.chr12 4397403 24 + 75515492 cagtttctcatttgtaaagtcg----ag a score=17840 s hg19.chr6_ssto_hap7 3238521 398 + 4928567 TTAGTGTTGATGATGATGACCGTAACCACAATGACAGCaatgatgatcatgatggctgtcctcctttccttacacaatttttatggaaagctatttaagttgcctgtgtgaaagtgctctgtG----------TTAGCTCTTGTTACCATCTGGGAGGTAACTTGGAG----ATAGATGAGGAAACGTGGCTCTTGAGCAGGAATGTCGaagggcacggatgcaaggaacagtctgtagtggatctggcct-tgtcatttgcctcttgctattgtccaaattacacagttcctccaggacttagt--------atataaaatgaggatacccactctacctggggtttcatgagaattaaatgagttaaagtataggaagcacctggcctggtgcctggaatgtagaacatttcagtaaaa s canFam2.chr12 4397427 415 + 75515492 atagtGTTGATGATG-TCAATGGGATAACAACAACGATAACGATGATCATAA---CCACCCTCCTTTCCTGACACAATTTTTATGGAGAGCAACCGAGATAGTTTGTGTAGAAGTGCTTTGTGATTACAGATATCAGTTATGGTTACTACC-GCAAGGTTGCCTAGAGTCAGCTAGATGGGGAGGCATGGCTTtggggcagggatgtcaaggcgcatggatggaaaggtggacgtggagtggagctgggctatgtcatttatttctcgattgtgtccaaattacatagcccctc-agaacttggttttcttgcctataaaatgaggatacccacactacctgaggtttcatgagaattaaatgagataaagtttatgaagctcctggcccggtgcctggAATGTCGAGAATTTCGCCAAAT a score=13259 s hg19.chr6_ssto_hap7 3239588 265 + 4928567 AGTATATTTTGAAGCTCTCACAGGCAATG-TAAATGTTGAGGTTCCCAGGCTAAATGCTTTCCTACTCTTCCAGGGCCTGGGGAAATCCTGATAT--TACCTAGAAG---AATTCTTTATTCTCTTTGTTCTAGGAAAGTCCAATATGGGTGGCTCTCCCAAGACAGCTGTTGACCATATCAGAGAGATCCTGAACATCAACCAGAAGAGGAATGACTATCTGGGTGAGCCCCTGCCACTGCCACCAC-ATTTGTTCTGCTCCTGCAGAGGT s canFam2.chr12 4397842 269 + 75515492 AACATATCTTGAAACTCACGTGGGAAGCGATAAATGTTAAGGTTCCCAG-CTGGATGCCTGCCCACTCCTCCGGAGCTGTGGAGAGTCCAGATATATTCCCCAGATGGACAATTCTTT--TCCCTCCATTCTAGGAAAGTCTAACATGGGTGGCTCTCCCAAGCTGGCTGTTGACAATATCAAAGAGATCTTGAACATCAACCAGCAGAGGAGCGACTATCTGGGTGAGCCTCTCCCTCCTCCACCCCCAGATGTGCTGCCCCTGCGGTGGG a score=3350 s hg19.chr6_ssto_hap7 3239917 83 + 4928567 CTGCGTTGTTCTGTACAAAGGCAACT----CATGTTGAAGAGCCTGGGGTCAAACTACTGCCCATGGTCTCAACCTTACCttctttt s canFam2.chr12 4398159 82 + 75515492 CTGTGTCGTTCTGTGTGAAGGCAGCTGAGTCATGCT--CGAGTCTGGTGTCAAACT---GCCTGTGGTTGCAGCCTTGGTTTCTTTT a score=30856 s hg19.chr6_ssto_hap7 3240633 1165 + 4928567 GTGGGCTGTGGCCATGGGcagtttcttcatctgcaaaaggggagtagtactaggacccagctcacaagctgacaggggaagatgctcagacaaacactgcctgcctggcatagaaaaatgcccagcatatgttagccatGACCACGACCGtcgtcgttatcatcatcatcatcatcatAGCATCTCATGTTTCAGGAAACTTTCCAGGAAGAAGGGACCTCGATTCCCTCTG--GGGAATGTCCCTGGTGGTTGCTCTTTCAGCAGCACAGCTGGCTAACTAAGGCTTTGGCAGTTGCAGCCTCTAAAGGAAAAATTCCTCAGG-TTCAGACTAAACACAAATTGCACTGACCTTTGATCAGAAAGTAATTTCAGAGAGAGAGATGCTCAGACAGGGAGGGCAGCTGGTTTTGAGCCCCAACCTTTCATCTTCCCCTTAGCTCCTCTCCTTTCCATTCACACTGCCCCCTCCCCCATCACCTGGCCCTCGGGGGTAAGCTGATTCCTCTTTAAAACTCTGGCCCAAGGAAGACAAAATTTAAAGCCCACTCCCTTCCTCCTTAGCATCACTGGACCAAGGTCAAATGCTACA-------AAAACATTTTATTGAAAATAAGCAGGAAACCAAACGAAAATAGTCAAAGAAAACGCACAAGGCACGATCGTTGTCTAGCTCCAACTGTAACTGTTTCTATCTGGGCCATTGCCAGATTGCCTCCTGGCTGAAGATCTCTTGGTCC-------ACCTAAGCACCTTGCTTTTTACACACAACGCGGGGCTCTCTGAGAACAAAAATGGGCCACAAGGGGTGCAAAGGCTGGGAGAGGAGTAGACTCTGTGGTCTGTCTGAGGGCAGTTCTGACTGGCACCA-----CAGTCGGAGGACAGGCGCGGCCTGTTGTGTGGGTCCAGGGCCTCCAGTGGGAAAACGTGGCTTTAGGCCCTTCTCCCAGATGCTACCTTTTACAGAGGAAGACCAGATCTGAGGTTTAGTTTCCATGTTGTGTTCTGAGTTCTTTCTATTCAttcagtcatttaaaagtacttaccaaactaccacaaacctgggtggcttagaacacagaatttctttttcttacagttctggaggttagaagtctgaaatcaaggtgttggcagggccgtgcttcctcagaaggctcttgggaagaattct s canFam2.chr12 4398241 1020 + 75515492 GTTGGCTGTGGCCGGGGCTGGTTTCTGCCTTTGCTACAGGGGA-CGGTGCTAGGACTCACCTCAGAGGCCCATAGGGGCAAATACTCAGATA--------TCTCCTGGTGCAGAggaa----cagtgtatgg-aacagtgtatgTGAGCG--GCTGCTGCCATCATCATGGCCTT--------------------GAAACT--CCAGGGAGGAAGGGCCTGGACTCTCCTTGTAGGGACCGTCCCTGGCGTTTCCTCCTTTAGCGGTATGGATAACCAACTAAGGCTTTGGCAGTTGCCGCCTTTAAAGGAACAATTCCTCGGGGTTCAGACTAAATGCAAATAGCATTGATCTTTGACCAGAAAAGAATTTTAGAGAAAAGTGCTCTGTGTAAGTAGGGACAGTTGCTCTTGAACCTCCAAGTTTCACTTTCCCCTTGGGCCTTCTCTT---------CATGGCCCCAACTCC----ACCCTCCCCTCAGGAGCAAGTGGATTCCTTTTTAAGACTCTGGCCTAGGGAAGGGGAAGGCCAAACTCTCCCCGCTAACTCCTTAGCATCACTGGGCTAGGGTTAAA----ACACCATTTTAGAATACCTTATTAAAAA-AAGCAGGTA-CTAAAGGGACATAGTCATAGAAAACATGCAGAACCTAAT---TGTCCAACTCCCACTGTGACTGCTTCTGGCCTGCGGGGGGCGACACTGCCACCTGaggaaagcattgtctgccccccatctgcctgagcaTCTCACTCTTTGCACACCACTCAGGGTCCTCCGGGAGCCGGAAGGGGCCACGAGGGGTGCAAAGCACAGGAGAAGCCCGGACGCTGCGGCCACCCCG--GGCAGTTCTGACTGCTACCTGTTCTCTCTTGGAGGCAGGATGTGAATGGTCATGTGGGCCCAGGTTCTCCGGTGGGAAGAGATGGCTCCAGACCCCCCTCTCGGAGCCTGTACCTTACAGAGGAA--CTAGATCTGAAGTATTGCCTCCAAGCTCGCTCATAGGCTCTTT------ATTCAATCAT--AAATGTCCTTA---------------------------AGTACAT-----------------------------TTGGAAGTCT---------------------------------------CTCCTGGGCATCATTCT a score=5413 s hg19.chr6_ssto_hap7 3243055 85 + 4928567 TTGTCTGGGGCATtgcagttttagacaggaagaccagggaaggcctcactgagaaggtgacatttgagccaagacttaaaaaggt s canFam2.chr12 4399624 85 + 75515492 ttggccaaggcatagcagttttagacaaggatcccaggcaaggcctcactgagatagtagcatttgagtcaagatttgaaaaggt a score=95496 s hg19.chr6_ssto_hap7 3243140 1715 + 4928567 acgaaagtgagccatgtgga-agtctgggggggaggagtgaactaggcagaggcacagc-tgggcaaagggcctgaggtgtgaccatgcctatggatttgaggaacttcaaagaggctgtgtgctgcaggagagtgaagggcagggagtggcaggaaatgaaggcagacaggtagcagtggggaggacgcaggggtccagctcatgtaggtcttgattggacacagtgagTTTCAGATGACAGCCTCCTGTCTCATGGGGTAGCCCCAAAGCCACAGGAGTCTGGTGATTTCCCTCTTCCCCACCAGACATCTATGCCATCGGGGTGGGCAAGCTGGATGTGGACTGGAGAGAACTGAATGAGCTAGGGTCCAAGAAGGATGGTGAGAGGCATGCCTTCATTCTGCAGGACACAAAGGCTCTGCACCAGGTCTTTGAACATATGCTGGGTGAGTGAGCTTTGCCCTCCTTGGTGTGGGGAGGATGGTGAGGAGCCCGCCAGAGGCCCGTGTTGGGAACCTGGACACAGTGCCCCTCACTTGCCTCCTTCCCCATCTGATCCTCACACCCACAGATGTCTCCAAGCTCACAGACACCATCTGCGGGGTGGGGAACATGTCAGCAAACGCCTCTGACCAGGAGAGGACACCCTGGCATGTCACTATTAAGGTACCAGGAAGGAGGGGCAGGGCTTGGATTCCAGAGGTAAAAGCGGCCATGGGCCAGACATACTGCAATCTCTGAAAATCACCTGTTCCCCTGCAGCCCAAGAGCCAAGAGACCTGCCGGGGGGCCCTCATCTCCGACCAATGGGTCCTGACAGCAGCTCATTGCTTCCGCGATGGCAACGACCACTCCCTGTGGAGGGTCAA---------------------TGTGGGTAAGGCAGGGGATGCACCAGCCTCCTGATCCTGAAGCCACAGATCCTACCACCTCACCCAGCCTCTGGCCCCTGCAGGAGCCCTGGTCTAGCCTAATCTAGTGTATCATTTCCAGGAGACCCCAAATCCCAGTGGGGCAAAGAATTCCTTATTGAGAAGGCGGTGATCTCCCCAGGGTTTGATGTCTTTGCCAAAAAGAACCAGGGAATCCTGGAGTTCTATGGTGATGACATAGCTCTGCTGAAGCTGGCCCAGAAAGTAAAGATGTCCACCCATGCCAGGTGCCTGGAGTCTGGGATGGGAGGGTGCCCTGCAGGGAAGAGTGCTCTGGAGATCCCT---GGAAGAGATACTGGGGACAGGCTGGTGTGACCCTTGCTCTTCTCCCCAGGCCCATCTGCCTTCCCTGCACGATGGAGGCCAATCTGGCTCTGCGGAGACCTCAAGGCAGCACCTGTAGGGACCATGGTGAGTGCTGGGACTTATGGTGCTTGAGAGCTGGGGCCGGGGTTTGGGGGTGATAACAAGGACTAGGCTGCAGTCCCCAAGCCAGGAACCTGGATTCTGGGTAAAAGGACCAGCACCAACATCCCCTTCTC-TTGACTATAGAGAATGAACTGCTGAACAAACAGAGTGTTCCTGCTCATTTTGTCGCCTTGAATGGGAGCAAACTGAACATTAACCTTAAGATGGGAGTGGAGGTGAGGGTCTCAGGTTGGGGATGCTG-----GGAT---CCCCCTGTGACAGCTCCC-AGAATGTCTCT------CTTCCTTCTCCAGGTCTGGCTGCTTTCTCTCTCTGACGC-GGGTCACCCCTCCTCCCAAGCCTCACAAACCTGCTAGGTGTCCC s canFam2.chr12 4399906 1675 + 75515492 aagaaagtgagccgtgtgggcagtctgggc---aagagtcaaccaggcagaggcaccgcgtgtgcgaaaggcctgggttgggagcacgcctgcaaatttgaggaacttcaaggaggttatatg--gcagg-gagtgaagggtgtagagtgtcgggaattgaggccagacaggtagtagagggt--------ggggtccagctcatttagggctttgtaggacccagtgagTTCCAAATGATAATTCCCTGTCTCGCAGGGTAGCTCCTCAGCCACAAGATTCTGGTGATTTCCTTCT-CCCCATCAGACATCTATGCCATTGGGGTGGGCAAGCTGGATGTGGACTGGAGAGAACTGAATGAATTGGGATCGAAGAAGGATGGTGAGAGACATGCCTTCATTCTGCAAGACACAGAGGCTCTGTACCAGGTCTTTGAGCACATGCTGGGTGAGTGAGCTTTGCCCTCTTCACAATGG--------------AGCCGGCTAGGGGTCCAGGCTGGGAACCTACTCATGGTGCTCCTCACAAACCTCTTTCCCCCTCTGCTCC-CACACCCGCAGATATTTCCCAGCTCACAGACACCATCTGCGGGGTAGGGAACATGTCAGCCAATGCCTCCGTCCAGGAAAGGACACCGTGGCATGTTATTATTAAGGTACCGGGAAGGAGGGAAGGGACTTGGGTCCCAGAAGTAGAAGAGGAAATGGGCCAGAGACATAGCAGTCCCCCAAAAACACCTGTTTGCCTGCAGCCTAGGAGCCAGGAGACCTGCCGGGGGGCCCTCATCTCAGACCAGTGGGTGCTGACGGCTGCTCACTGCTTCCGCCATGCTGAGAACAGCTCTCTGTGGAGGGTCACCGTAGGTAAGGGGGGGGTCACTGTGGGTAAGGCAGGGTCCACACTAGGTTCCTGACCCTGTGGCTGGAGCTCTCAACAGCAGTCCCAGCCTCTGGCCTCCCTGGAAGCCCTGGCCCTGCCTAATCT-GCTTATTTTTCCCAGGGGATCCTAACTCCCAGTGGGGCAAAGAGTTCACTATTGAGAAGGCAGTGATCTCCTCGGAGTTTGATGTCTTTGCCAAGAAGAATCAGGGGATCCTCGAGTTCTATGGTGATGACATTGCCCTATTGAAGCTGGCCCAGAAAGTGAAGATGTCCACTCATGCCAGGTGC-TAGAGTCTGGGATGAGAGGGCGTCCTCTGGGGGAGAGTGCTCTGGGAAGTCCCACAGGAGGGGACACCAAGGATGGGCTCCTGTGACTCTTGTCTGTCTCCCCAGGCCCATTTGCCTTCCCTGCACGGTGGCGGCCAACCTGGCTCTGCGGAGACCCCCAGGCAGCACCTGCCGAGACCATGGTGAGTGCTGGGCCTCA-GGTGCGTGAGGACT---------------------------------------------CCAGTCTGGAGTCTGGATGCTGCATAAAGGGACCAGCATCA-CATCCCTCTCTCCTTAACTGCAGAAAGTGAACTTCTGAACAAACTGAGCATTCCTGCTCATTTTGTGGCCTTGAACGGGGACAAACTGAACATTAACCTCAAGACAGGGACAGAGGTGAGGATCTCAGGTCTGGGATGCTGTGAGGGGATGGGACCCCTGTGGCAGCTCCCCAAAGTCTCTCTTTGTCCCTTCCTCCTCCAGCTCTGGCAGCCTTCTCCCTCTGACCCCATGCCACCTCCCCTCC-AAGGCTAGCAA--CTG-TAGGTAGCCC a score=529009 s hg19.chr6_ssto_hap7 3245165 10755 + 4928567 CCGGGTCTGCTTATTCTACCCTTCTCTCTGGTTCCACCCCTGCTGCAGTGGACAAGCTGTGCCGAGGTTGTCTCCCAAGAAAAAACCATGTTCCCCAACTTGACAGATGTCAGGGAGGTGGTGACAGACCAGTTCCTATGCAGTGGGACCCAGGAGGATGAGAGTCCCTGCAAGGGTGAGTCCCTCAC------------------CATGCCTGGATTCCCAAGGGGAAGGCCACCTGTGTCTCTGTGGCCAGCATGCATGCCAGAACACCAGTCCACTGCCCTAGATGACA------------------------CTGTCTCCTGTCACCCTTTGCTGGCAGGAGAATCTGGGGGAGCAGTTTTCCTTGAGCGGAGATTCAGGTTTTTTCAGGTGAG-----AAGGTAGAAGCTTGCAGGACCCAGGGGTTACAGGATCTCAGCCTTGTTGGGGGGATGAGGGAGGCCTTTGAGGGATCTAGGGAGGTTGGGGCTTACAGTTGGGGCTGTGGCAGCCTCCCAGCC-AGTTCTCTCCTTTTCTCCAGGTGGGTCTGGTGAGCTGGGGTCTTTACAACCCCTGCCTTGGCTCTGCTGACAAAAACTCCCGCAAAAGGGCCCCTCGTAGCAAGGTCCCGCCGCCACGAGACTTTCACATCAATCTCTTCCGCATGCAGCCCTGGCTGAGGCAGCACCTGGGGGATGTCCTGAATTTTTTACCCCTCTAGCCATGGCCACTGAGCCCTCTGCTGCCCTGCCAGAATCTGCCGCCCCTCC-ATCTTCTACCTCTGAATGGCCACCCTTAGACCCTGTGATCCATCCTCTCTCCTAGCTGAGTAAATCCGGGTCTCTAGGATGCCAGAGGCAGCGCACACAAGCTGGGAAATCCTCAGGGCTCCTACCAGCAGGACTGCCTCGCTGCCCCACCTCCCGCTCCTTGGCCTGTCCCCAGATTCCTTCCCTGGTTGACTTGACTCATGCTTGTTTCACTTTCACATGGAATTTCCCAGTTATGAAATTAATAAAAATCAATGGTTTCCACATCTCTCAGTGCCTCTATCTGGAGGCCAGGTAGGGCTGGCCTTGGGGGAGGG-----GGAGGCCAGAATGACTCCAAGAGCTACAGGAAGGCAGGTCAGAGACCCCACTGGACAAACAGTGGCTGGACTCTGCACCATAACACACAATCAACAGGGGAGTGAGCTGGATCCTTATTTCTGGTCCCTAAGTGGGTGGTTTGGGCTTACTGGGG-AGGAGCTAAGGCCGGAGAGGAGGTACTGAAGGGGAGAGTCCTGGACCTTTGGCAGCAAAGGGTGGGACTTCTGCAGTTTCTGTTTCCTTGACTGGCAGCTCAGCGGGGCC-----------CTCCCGCTTGGATGTTCCGGGAAAGTGATGTGGGTAGGACAGGCGGGGCGAGCCGCAGGTGCCAGAACACAGATTGTATAAAAGGCTGGGGGCTGGTGGGGAGCAGGGGAAGGGAATGTGACCAGGTCTAGGTCTGGAGTTTCAGCTTGGACACTGAGCCAAGCAGACAAGCAAAGCAAGCCAGGACACACCATCCTG-CCCCAGGCCCAGCTTCTCTCCTGCCTTCCAACGCCATGGGGAGCAATCTCAGCCCCCAACTCTGCCTGATGCCCTTTATCTTGGGCCTCTTGTCTGGAGGTAAGCGAGGGTAACC---TTCCCTTCCTGCTGTCTCCAGCATCCCTCCTTGGCCTTTTGGGGCCAGGCTTCATCAGCCTTTCTCTTCAGGTGTGACCACCACTCCATGGTCTTTGGCCCGGCCCCAGGGATCCTGCTCTCTGGAGGGGGTAGAGATCAAAGGCGGCTCCTTCCGACTTCTCCAAGAGGGCCAGGCACTGGAGTACGTGTGTCCTTCTGGCTTCTACCCGTACCCTGTGCAGACACGTACCTGCAGATCTACGGGGTCCTGGAGCACCCTGAAGACTCAAGACCAAAAGACTGTCAGGAAGGCAGAGTGCAGAGGTTTGAGGGCAATGAGTGTGGGCAGTGGCCTAAGGCAGAAACAGGGCAGGCGGCAGC-AAGGTCAGGACTAGGATG-----------------AGACTAGGCAGGGTGACAAGGTGGG----CTGACCGGGAGTAGGAGCAGTTTTAGGGTGGCAGGCGGAAAGGGGGCAAGAAAAAGCGGAGTTAACCCTTACTAAGCATTTACCCTGGGCTTCCAGGCAGCCCTGGAAGTCAAGAGAACACTCAGAAATGGGGAGGGAGAAGCAGTGGAAATCCATATGGGTTGAGGAGTAGGTAAGATGCTGCTTCTGCGGGACTGGGAATGCGCTGTTTCTCAGTGACATGGTCTCCGAGACCAGGAGGGATACACCTAAG-GCAGCCTTTCCCTCTTGATGACTTCTACTTGTCCCCCCTT---CTCAAAGCAATCCACTGTCCAAGACCACACGACTTCGAGAACGGGGAATACTGGCCCCGGTCTCCCTACTACAATGTGAGTGATGAGATCTCTTTCCACTGCTATGACGGTTACACTCTCCGGGGCTCTGCCAATCGCACCTGCCAAGTGAATGGCCGGTGGAGTGGGCAGACAGCGATCTGTGACAACGGAGGTGAGAAGCATCCCCTCCCCCTACATTG-------CTGTCTCCCTGACGGCGC---CCAGCCCGAGGAGTGGGCACTCGGCTCCGGACACTGTAACTCTTGCTCTCTACCTTGCTCACGGGGCCTCAGGCTTCAGTGCTTACCTCGATGTCTCATACCTCTGCAGCGGGGTACTGCTCCAACCCGGGCATCCCCATTGGCACAAGGAAGGTGGGCAGCCAGTACCGCCTTGAAGACAGCGTCACCTACCACTGCAGCCGGGGGCTTACCCTGCGTGGCTCCCAGCGGCGAACGTGTCAGGAAGGTGGCTCTTGGAGCGGGACGGAGCCTTCCTGCCAAGGTGACCTTTGACCTGTACCCCCAGGT-CAGATCCTGGTCTTCCATCCTACTGTC-------------------TTCTCTCCCCACCTCAACCCTGCTCTTTCC-TCACTTTGTTTAAACCTCCCTGTACAACTATCTCACTTCTGAGCCTTTTATACCCTGGAAACC-CATGATCCCCCGTCTCTTTGGTCACTGTATCCCTGACACTCCCA-------GACATTTGACCTCATTTCTGACTCTCCCAGACTCCTTCATGTACGACACCCCTCAAGAGGTGGCCGAAGCTTTCCTGTCTTCCCTGACAGAGACCATAGAAGGAGTCGATGCTGAGGATGGGCACGGCCCAGGTTTGAAGACAGAGAAGGGAGGCAGGGCAGGGAACTGGGGGAAAATGGAGAAGGGACAGAACTGTTAATGCTGGAGCCTGAGCCACTCTCCTGGCACCCAGGGGAACAACAGAAGCGGAAGATCGTCCTGGACCCTTCAGGCTCCATGAACATCTACCTGGTGCTAGATGGATCAGACAGCATTGGGGCCAGCAACTTCACAGGAGCCAAAAAGTGTCTAGTCAACTTAATTGAGAAGGTGGAATCCTCCTATCCCTGAACTCGGGGGAATGGAATCTCGCTGATCTTCCAGGACTAGCTCCCTGATCATTCCAGCCCCTCTGAACAACAGGGCCCCAGGAAAATCTCCAGGTCCTATTCTGTCCTCCTTCCCTTTTACTTGAAGCAGTTTCTTGACTGGTAATTCCTCCAT------GAACCTCAG-----CCCTTGAGCCTCT----TACTGAG----AGCCTCCCTGTCCCAGCAAAGTCGCTGAAATCTCCCAATCACAGTATTCTATTTTCAATGCCATGGCGCCTTGTTCTCCTCACCCACAGGTGGCAAGTTATGGTGTGAAGCCAAGATATGGTCTAGTGACATATGCCACATACCCCAAAATTTGGGTCAAAGTGTCTGAAGCAGACAGCAGTAATGCAGACTGGGTCACGAAGCAGCTCAATGAAATCAATTATGAAGGTCAGAGGTTAGGGAA--------TGGTGGGAGGTTCACTTTGGGGTCAGG---------AGGTTCAGGGTGGAGGGGGTCATGAGACTACCTTGAGGGCGA-CAGGGAGGACCACTTTGTAGTCAAAGGTTGAACAGCAGGATCGTTGGGCAATGGAGGTTAGTGGGAACCTGTTGGGGGCTGGAAGGGCCACTTT-GTGGTCAAAGGGAAGTCCGTGTAATGATGATTAACTTAAAAAGTTGAAAGATGTGGGATTTCAGTTGCAGATTGGTCTCTGGGGTTAAAAGATGGCTTGGAAGACCAGGTGAGGTGATGGTCTCTTCCCTCTCCACAGACCACAAGTTGAAGTCAGGGACTAACACCAAGAAGGCCCTCCAGGCAGTGTACAGCATGATGAGCTGGCCAGATGACGTCCCTCCTGAAGGCTGGAACCGCACCCGCCATGTCATCATCCTCATGACTGATGGTCAGAAGGGACCTCTCTCCTGTCCCAGCCTCCCCACCTTCTCAGACCAGCATGTGGCCCTTAAGTCCACTTGTAACACTATACC----CATGGTTGGGGCCCTGAATGTGACTCATAGCT----GGCTGTTCATCTCTCCTGTGACCCTTCATA---------AGGAATTCTTCCTAAGCC-CTGTGATCAACTATCTCTAACCCTTCCTCAACTTGCTCACCCTGCCATGTGTATCCCTGCCTTTAGCCAGTTTATCT-------------TCCTTATCTCCTACCCTCAT-GGTCCTGTCTCTTCTGCAGGATTGCACAACATGGGCGGGGACCCAATTACTGTCATTGATGAGATCCGGGACTTGCTATACATTGGCAAGGATCGCAAAAACCCAAGGGAGGATTATCTGGGTGAGTAAC-CTGCCTAGGACCCAGCACCCCACTTCCTCAG-------------GGCTTGGACCCTCATCCTTCCT-TTTTATCCCTCAGATGTCTATGTGTTTGGGGTCGGGCCTTTGGTGAACCAAGTGAACATCAATGCTTTGGCTTCCAAGAAAGACAATGAGCAACATGTGTTCAAAGTCAAGGATATGGAAAACCTGGAAGATGTTTTCTACCAAATGATCGGTAGGGAGATACAAGGGA---ATAAAGAA--CACAACTCTCCTCAGGTTCCCCTGAAGTAATTCATTCTTCCTCTACACCTGAAGCTCTAGTTGCCTGGAAAGCCTTCTTCATTCCTCCTTCTCTACCTCAGTGTCACTATTCTTGTTTCCTGGCACTGTTCACTT---aaccttagaatcacagagctctgagc-acttcagagatctttctacagtcctacatttgacacg--tggaaacagaagccaaaggaggtcaagggacagcaagttagcaacaagggtgggcttgaaaacagccaggcctctgacagcttgatcccaagttctttcccttttcagtccaccatagcagTTTTCTCCTAACACGAGGAAACAAATACCCGTGGTCTTTCCCTTTCTCCTTTTGGGCCTTTGCTCCCCATAGAC----------TCCTACCC----AAAAGGCTGCTGCCATTTGGGAATGAAGTGTTCCGAGTTTTCAGCA---------------------CATTCTCCTTCTCTGCCAGATGAAAGCCAGTCTCTGAGTCTCTGTGGCATGGTTTGGGAACACAGGAAGGGTACCGATTACCACAAGCAACCATGGCAGGCCAAGATCTCAGTCATTGTAAGCACAGAATCCCAGTAGTGGGGACTTGGGGGAGGTGAGGTCAAGGTGAAATGGGAGTAGGGGAAGGAAAAAATGGCCATAAGAGATGGTGGTTTGTGAAAGTTGAGCTTTCCCTCTCTACTGTTGTGTCCCCAGCGCCCTTCAAAGGGACACGAGAGCTGTATGGGGGCTGTGGTGTCTGAGTACTTTGTGCTGACAGCAGCACATTGTTTCACTGTGGATGACAAGGAACACTCAATCAAGGTCAGCGTAGGTAAGGATGCAACTGA-AGGTCCTGGGCTGCACCTATGCTCTCCAGGCAACACCTCCCACTTTCTACAGATCCTACACTCCACCCATCCTCAATGCAGCCCCATTCCTTGCACCCCAGACCAGTCAGGGATGGGGGAAGACGTGAAGTTAGGAATGACACGGGGCCAGAGGCAGGAAGCTGCCCACAAAGAGGTGGTAC------------CTACTCTCCTACTTCAGGAGGGGAGAAGCGGGACCTGGAGATAGAAGTAGTCCTATTTCACCCCAACTACAACATTAATGGGAAAAAAGAAGCAGGAATTCCTGAATTTTATGACTATGACGTTGCCCTGATCAAGCTCAAGAATAAGCTGAAATATGGCCAGACTATCAGGTGAGAGCGTCCAGATCCCTGAGGAA---AGGCTGGGAAAGGCTGGAGGACTGGGGTGAGGAGCAGGCCTGGTTTGCTGTTCTCCTTG-----------TCCTTTATAGGCCCATTTGTCTCCCCTGCACCGAGGGAACAACTCGAGCTTTGAGGCTTCCTCCAACTACCACTTGCCAGCAACAAAGTAAGACATACTTGG-CAAGAGGATAAGGATGAGATCCCAAGAGACAAGTGGGGCATGAGAGGGAGGTGCAATAGGAAGAGATGATGCCTGGCCCAGAACCTAGCTCT--AGAAGGGCTTAGGGGACATCTACTGAGTGACAAAGGCAATGGGGAGATGACAGTG----GTGGGAGCAG-CTGAAGTGACGCAGTCT----ATTCGTCCAGAGGAAGAGCTGCTCCCTGCACAGGATATCAAAGCTCTGTTTGTGTCTGAG------------GAGGAGAAAAAGCTGACTCGGAAGGAGGTCTACATCAAGAATGGGGATAAGGTGAGAAACG-GGCATCCTAAGGAGGCACTCTAGGCCCCAATCCTTCCTAAGCCACTTCTGTTCA---TTACTTCTCCATGCTTCCCACCTCCCCTACAGAAAGGCAGCTGTGAGAGAGATGCTCAATATGCCCCAGGCTATGACAAAGTCAAGGACATCTCAGAGGTGGTCACCCCTCGGTTCCTTTGTACTGGAGGAGTGAGTCCCTATGCTGACCCCAATACTTGCAGAGGTGAGAGAATGCTCTTTGGTTGTGCTACAAGTGCCCAAGGCCCAACAGTCCTTTTCTCTACAGCTTCTCCTCTCCTTGCAGGTGATTCTGGCGGCCCCTTGATAGTTCACAAGAGAAGTCGTTTCATTCAAGTGAGTCCTCCCTTTCCTATCTG--GGGAGATGCCAAGTGGTCAGCATGGGCCCCAAAGCAGGAAAGCTCAATGCATGTGGCTAGTAATTCGAGGTAGGC--AGAGCCTGCCTCAC-------------------------CTTAGGACCGCATGTCTTGCCTGCGTGTGTCAAGAACGAG-GCTGAGCTGGGTCCCTAGTCTGATTCCTTTAGGTCAGCTAAGACGCAAGCAGGAACAGCCATGCTTCCAG-GATTAGGAA--------TTCTACTGAATGATCCATGGCACCCCACTGCC-TCTGCAGGTTGGTGTAATCAGCTGGGGAGTAGTGGATGTCTGCAAAAACCAGAAGCGGCAAAAGCAGGTACCTGCTCACGCCCGAGACTTTCACATCAACCTCTTTCAAGTGCTGCCCTGGCTGAAGGAGAAACTCCAAGATGAGGATTTGGGTTTTCTATAAGGGGTTTCCTGCTGGACAGGGGCGTGGGATTGAATTAAAACAGCTGCGACAACACCTGTGTTCCAGATCCTTTTGGGGCAAGGGAGTGGGGAACAGGCACTGGCCATGTTGTTACA-CTGAGATCAAACCTGACAGCCGTTTTTAAAGGTTTAACCCCAATCCCAAGTGCTGAAAAACCAGAGGCTGAGGGAGATGTGTAAGCTTCCACCTCAGTGTTTTACTGAGACC-AGCATTGGGGCATATGAGGCACAAGGAATCCAGCTCTGTTCCCTAGAAGCCATCCACAAGGTTTTCCTTGTAGACGTCATCACTGTAGACAATCTGGGTCCTCTTGTCCCGGTGGCAACCCTTAGGGCTGTTCTGGACAGCTAGGGAGGGAGGAGAGGAACAGTTAAGGTCTAAAGGAGATCATAGAACAGACCCTGAGGCT---GACTC-----CTGACCACCTCACTCCTGGCCACTGGCCCCTGGAAGCCCAGTTTCCACGCTGCCCTCTGGTGGCCAGGATGGCCTGTCTTCC-TTAGCTCCTTTG----------TGCCAACCCATGGCCAAG---AAAAGTATAAGTGGACATTTTG------------------ATGAATGTTTTGTTCTTAGAAAAATCCCAAATGTCATTGTTGAGACACGTGAATGATATTAACCCACTAC---TTACAGTCAGTATGTCAGAAGCTAAAAACTAGAAAACCTCTGTAGCCCTTTTTTGACATGCTGGTCAATTCTAGTTCCTTTCTTTTGCCTGAAGGGCCACTGTAG--CTGAGCCCTTCTTTCTGCTCACTCCTTTCCCAGGAAAATCTACTTTCAGGGAAAATGGATTATTC-----ACACTAAGAAATGCTACTAGCTCCACC---AGAACTCATTCAGGGTGTAGCTTTGGCCCTCACCATTCTCTCTCAAGCCTCTAGCTGTTTCTTCCCCTTCCTCTTTCCTCCCTCCACCAGACATGTTACTCTCTTCACCCCA--TCCAATGGTTCCATCCCCACCACCCTTGAGCTACAGAGAATCTCTCTCACCCA-CTCCCATCCTGT--GATCTCTGTGCCTCAACACTGCTGGCTACTCCCTCTTTCTCAAAGTGTGTGTCCTTTTGCTTCAGTGGCCCAGGCCCCTGCGGTGCTGCTCCCAGCCCTCCGACCCCTCCTCCTGTCTCCTTTGCTAACGTTAGGCTCAACGTTAGCCTAACATGTCAGGACAGCTGGGGACATGTGGGGTGTGAGGTGAACAGTCCTGTTTCCTAACATAGTCCCAgagtactcctcaaactgagtcctgggtcgtttttttttctctgaaatcagagtctccctgatgatcctattgtttggcagccaccctgtgatgtggatgact-taatctatgttttccttccttacctcacacctgagttccagatccctgatttcgaatacttatgaaactcactctactccatctcaaaatgaacaagccccatgagacactcatcttcctcaccaatctcactccagctcccactttcttccctgttccagtcactgCTTTGGAAGCTGTTTTCAATCCTTTTCTCTCCTTTCTTT---ACCTCTAACTGACAGAGGATCTGA-AATTTTCCTTCCCATTCCCATAGCCTCCGCACACACTCTGACCTCGATCATCTCTAGGAAACCCAAGGATGTGTGGGGG--AACCAAAAGGAATGGCCTGTGGGGGAAAGGATGGGAAAGGAAGAATCCCATTCTTACCGAGGGAGCCCCAGACAGACTTGCCAGTAGCGGCATCCAGCATGGGCTGTTTTCGGGCTATGTTGACTTTGAGCTGTACAGACTCCACCTGGGTCCCGTTGAGCTGAAGCAGAAGAGG---GGAGGCAGAGGATGGGGAGGAAAACATTACAGATAAACCAAAGAAGTTATTCCAGGAGTTGCTATCCTAGGAGGAGACTGAATAAGGAATCTGAGAATGTGAGTTTTTCTGTGTGAATAGGGAGAGGCTTTCTTTATCAAGAGGAACCAACTTCTTCCTGGCATCTAGTATTTTGAGGAGAACACATGAGAACAGCAGAAGCGATGGGAAGAACAGATTTGGGAAGTTCCAACCTCAGCAACGGCCTGATCTGCTGACTCCATCTTTTCATAGGTGACGAAGGCACAGCTGGGAT-AAGAGAAAACACGGTCAG--TGGAGAGCCAAGGGGCTCTTCTGGACCCAACCAAACCCAGTGATAATAGGCGGCTGCAGGGAGGGCAGCTTCTTCCCTCAGGTCTCACACCCCAGGATTCTCCCAGGACTTCTCATCATGCCCTGTTGTCATCCTTACTTTCTGGGTGGGTCCATGGAGAGGTCAATGATGTTTCCAAAAGGAGAGAAGGCCCCACGGAGAAGGGTGGGTGTCATGTCTTCTCCATATACATAGAGAGTATTCCCTTTCCTAGGGGCTCGCCGTTCAGGGAATGAATCCGACCCTTTGGGAGCACAAATCATAGTCACAAGACATAGCCCATGCCACATTTCACTTAG--------------TAGGACCCACATAAACCTCAGTTAAGGTCACCTTGACCTCCAGCCAAAATCACTCACTGCGGAAAGGACCCtctcggtctcggtctcgatcccgctcccgatccctgtcccgttcccggtctcgatctcgatcccgatcccgatccctgtcccgctctctgtctctgtctcgatcccggtctcgatcccgctcccgatctcggtctctgtcccggttcctctcATGGCTGCGGTCCCGGCTGCGGCTTCGGGGAGGGGAGGCTGAGGAGTGGGCACCACTGCGTTCTTCATAGCCCCAGTCAAAGCTTCGAGGGGGACCATCACCAGCCCCTGGGCCCTCTGCCTCTTCTCCATCTGGTCCTAGTTCTCGAAGTCGATCACTAGAAGACACAAAGCTGGGGAGATGCAGAC--TGAAGATCAAAGGGGGGTTTTACCTTCTCCCCTCAGACCCTGTGGAGACTCAATATTCCCTCTATAG-CCCAGCTC------CTACAGCCCAAACCTCCCAAGGACTCAGGCAATCA----------ACTCCACCAAATGGG-CCCAGCCTTATCTCTA-CTCTCTAACCTCTCATACAGAGATTTCCTCTGGGGACGTCTGGATGACTGTAAAAGAGACCAAGAACAGTTAAGATGATTTCCAGTTGCTGACATGTGGTCCAAAATATATTTGTCTCTCATATTCCTCCATCCCCAACCCCTCAGGGACAGA-AATTAGGAGCCTTTACCTCTTGCAGGTCATCATCAGCAGATATGCTCCTCTGGAACGGCTGGAAAGTGGGGACTGGTCCCTTCTCGGGGTCCTGGAGTGGT--GAGAGACCTACCTCAGTGTG-GAGCAGGAGGTTGCCCAACCATGGACCAG-AGGTGTTCCTCTTCCCTCACCCTCTTCTAGGTTTCCTCTGATCT-TTTCTTCCCTTTTAATTCTA-CATACATTTCTTATTTG s canFam2.chr12 4401581 10721 + 75515492 CTGGGACTGCTCATTCCATCCCTCTGTCCCACTCTGCCCCTGCTGCAGTGGACAAGCTGTATTGAGGCCGTTTCCCAAGACAAAGCTATATTCCCCAACTTGAAGGATGTCCGAGAGGTGGTGACAGACCAGTTCCTATGCAGTGGGACAGGGAAGGATGACAATCCCTGCAAGGGTAAGTCCCTCCCACCCCCCCACCCCCACCCCGAGCCTGGATGGCTGAGGGAGAGACCACCGCCATCCCTGCGGCCAGCATGCATGCCAAGACAGTGGTGCACTGCCCT-GACGACAGGGGCAGGGTGAGAGTCAGAATGACAATTTCTTGTCCCTCCTT-CTGGCAGGAGAATCTGGGGGAGCAGTTTTCCTTGAGCGGAGACACAGGTTTTTTCAGGTGAGGAGAGAAGGGGGATACTTACAGGAAT--GGGGTTACAAGATCATGGCCTTGC-AGGGAGACGAGGGCGGCCTTTGAAGGAACTGGGGAGGTTGAGGCTTGGAGCTGAGGCTGTGACAGCCTCCCACCCCATTTCTCTCCCTCT-TCCAGGTGGGCCTGGTGAGTTGGGGTCTCTACAACCCCTG---TAGCAAGAGTAATAAAAACTCACGCCAGAGGCCCCCCAAGGGCAAGG------AACCACGAGATTTTCACATCAACCTCTTTCGCCTGCAGCCCTGGCTGCGGCAGCACCTGGAGGATATCCTGAACTTCTTACCCCTCTAATTGTGGCCACCCATCCCTCTGTTGTCCTGCCAGCATCTGCCATCTGTCTTGTCTCGCACCCTTGAA--------CTCAGACCC-ATGACCCATCTGTGCTCCCGGC---------------------AACCCCAGAGA-AGCACATCCAGGCTGGGGAATCCCCAGGG-------------------------GCGCACCCTC------------------------TCCTTTCCT--------TGACTCACTCTCCTTTCACT--CATGTGGAATTACCCAGTTATGAAATTAATAAAAATCGACAATGTCCTCATCTGTCTGTGCCTCTACCTGGGGGGTGGCCGGGGGCGGGGGGAGGGGAGAGCGGAGGAAGGCCAGAATGATTCCAGGAACTGCAGGGAGGCAGGTCACGGACCCTGGCGCACAAACAGTGGCTGGACTCTGCTCTGTGACAGA--GTGGACAGGG-AGTGAGCCAG-CCTTTATTTTTGGTCCCTAAGGGGGTGGTCTGGGCTTGTTGGGGGAGGAACTGGGGCTG-AGAGGTGGTGTTGAAGGTGTCAGTCCAGGTTCACCG-CAGCAAAGGGCAGGGCTTAGGCAGTTTCTATTTCCTTGACTGGCAGCTCTGCGGGGTGGGGGTGGAGGGCTCCCTCTTGGACATTCCGG-AAAGTGGTGTGGGTCAGGTGGGCGGGGTGAGCCGCCAGTGCCAGAACA--GATTGCATAAAGGGCCGGAGGTGGTGGGGGGGCAGGGGAAGAGACAGCAACCAGACTCAGGTCTGAAGTTTCGGCTTGGGCGCTGAGCGAAGCAGACAGGCAGCACCAGCCCGCAGAGACCACCCTGTCCCCACCCCCAG--TCTCTCCTGC-TCCCATCACCATGGGGAGCACTCTCATGCCTCAACTCTGCCTTATATCCTTGGTGCTGGGTCTCTTGTCTGGAGGTAAGAGAGGGTCACCACTCCCCCTTCCTGCTGCCCCCAGCTTCTTTCCTTGGCCTTGTGAGGCTGGGCTTCAACAGCCTTTCTCTTCAGGTGGGAGTGCCACGCCATTGTCTGAGGCCAGGCCCCAAGGCCCCTGCCCTCTGGAGGGAGTACAGATCAAAGGTGGCTCCTTCAGACTGCTCAAGGAGGGCCAGGCGCTGGAGTACCTGTGTCCCTCTGGCTTCTACCCATACCCCGTGCAGGCTCGCACCTGCAGATCCACGGGGTCCTGGAGCACCCTGCAGACCCAAGACAAAATGGTTGTCAAGAAGGCAGAATGCAGAGGTTGGAGGGCAGTGAGGGTGGGCA-CGGGGTGATGCAGGGATGGAGCAGGTGGTGGCCGAGGCCCAGCCTAGGACGCTGTGAGAGTTGGGTGGAGACCAAGCAGGTTGA-GGGGTGAGGATGCTGAGCAAGTGCAGCAGCTGTC----GAGGACTGAAGGGAGGGGGGT--GGaagaagggagcgaatcttcactgagcacttatcctgtgc---caggcaGCCCCGGCAGTGAAAGGAACACTGAGAAAGGGGGAGCATGGAGAAGCAGGACTCATCATGGGTC-AGGGGTAGGC-----GTGGTTTCTGAGGGACCAGAAAGACCCTATGTCTTTGTGATAGGGTCCCTGAGGCCCGGAGGGAGACTCTCAAGAGCAGCCCTAACTTCTCAGTAACTTCTGCTTGTCCTCCCCCTCCCCCAAAGCAATTCGGTGCCCAAGACCACAGGAGTTTGAGAATGGGGACTACTGGCCCCGGGCGTCCTACTACAATGTGAGTGATGAGATCTCTTTCCGCTGCTATGATGGTTTTACTCTCCGGGGCTCCGCTAACCGCACCTGCCAGGCCACAGGTCGCTGGGACGGACAGACGGCCATCTGTGATGATGGAGGTGAGCAGCATCCCCTCCCCCGTCGACGGGATCCTCTCCCTCCTGGGGGCCGTGTTCCAGCCTGAGGAAGGGGC-----------GTCAC---AACTCCTGTGCTCTCCTGTGCCATCCGGGCCTCAGGCTTTGGCTCTCACCTCCGCATCTCGTGCTTCTGTAGCGGGCTACTGCCCCAACCCGGGCATCCCCATTGGCACAAGGAAGGTGGGCATCAACTACCGCCTTGAAGACAGAGTCACCTACTACTGCAGCCGAGGCCTCACCCTGCGTGGCTCCCAGCAGCGGACATGCCAGGAAGGCGGCTCTTGGAGTGGAACCGAGCCTTCCTGCCAAGGTGATGCTTGCCCCATGCCCTCAGGTTCAGATCCCGCTCTTTCATCCTCCTGTCCCTACCCCAGAGCCCTGTCTTCTCCCTGTAGTGCAGCCCAGCTCCTCCCCTCGCTTC------ACCTGCCCCTAGAACGTCCTCACTGCGGAGCCCTTCCTGCCCCGAAACCCACCTACTGTCCCGTCCCT---GTCCATGTGTCTCTGGCCCTCCCCCCACCCTGACACGTGACCTGCTTTCTGCCCTCCCCAGACTCCTTTATGTATGACACCCCTGAAGAGGTAGCCGAAGCCTTCCTGTCGTCCCTGACTGAGACCATAGAGGGCGTGGATGCTGAGGATGGCCACATCCCAGGTTTGAGTGCAGACCACGGAGGGAGG-CAGGGAACTAGGGGAGGACGAAGAGGCAGGAGGACCCTGCGTGCCAGAGCCTGAGTTTTTCTGGTGGCACCCAGGGGAGCAGCAAAAGAGGAAGATTGTCCTGGACCCGTCGGGCTCCATGAACATCTACCTGGTGCTGGACGGATCAGACAGCATCGGGGCTGGCAACTTCACAAGAGCCAAGAACTGTCTCCGGGACTTCATTGAGAAGGTGGGGCCC--------------------------------------CTGCTAGAACTAGTTCCCTGGTGTCCCCAGCCCCTCTGGGCTGCAGAACCTCAGAAAA--CCTCTGGTCCTATACTGTCTTTCCTCCTTTTTACTTGAAGTCGTTTCTTGACCTTTCACCCCATCACCCAGGCAAACCTCAGGGTGACCCATGAGCCTTTGGGTTTCTGAGGAAAACCTTCCCTGTCCCAGAGAAGCTGCTGACCTCTCCCAACCCTAGTCTTCT---TTCAACGCCATGACCCTTTGCTCCCCTAACCCACAGGTGGCAAGTTATGGGGTGAAGCCAAAATATGGTCTAGTGACATATGCTACAAACCCCAAAGTCTGGGTCCGAGTGAGGGACAAAAACAGCAGCGATGCCGACTGGGTCACAAAGATACTCAACCAAGTCAGCTATGAAGGTCAGAGGTCAGGGAAGGGACTGGTGGAGGAGGGGTCACTTTGGAATCAGAGAAGTCAAAAGACTCAGGGTGG------TTGTGGGGAGACCACGTGAGAAATCAGGGAAGACCACTTTGC-GTCTGGGGTTAGACGGCAGACTTGTTGGTGAATATGGGTCACCGGGGACCTATCGGGGGCTGAGGAGGTCACTTTTGTGGCCAAAGGAAAGCCAGTGGGGTGGC----AACTCAAGAACCTGAGAGATGTGGGATTTCAGTTGTTGGCGGGCCTCTCAGGGTCATGGATGACTTAGCCAACCAGGCAAGGTGAC---CGCTTCCCTTTCCCCAGATCACATGTTGAAGTCCGGGACCAACACCAAGAAGGCCCTGGAGGCAGTATACAGCATGATGAACTGGCCAGGGGAGACCCCCCCAGCAGACTGGAACCGTACCCGCCACGTTATCATCCTTATGACTGATGGTCAGAAGGAACTCTTCTCCTGCCCCAGATTCCCCAGCCTTTCATATGAGTGGGGGACTGTTCGGTCCACGTGCAACACCAGACTGTCACATGGTTGGGGCTCTGAGTACTGCTCAGGGCCCCAAGCATGCTGATCTCTCCTGTGACCCTTTACAGAGGAAAGGAGGAATCCTT---AAGCTTCTGTTGGGATCTGTCACTTCCATCCCCTCAATCTGCTTCCCCAGCCATGTGT--CAGGACTTCTGGCCAATCTTCCTCGACCCCCTTCTTTACTTGCTTCCCACCTTCACAGGCCCTGTTTCTTCTATAGGCTTGTACAACATGGGCGGGGACCCGGTCTCTGTCATTCACAATATCCGGAACTTCCTGGACATTGGGAGGGATCACAAAAACCCACGGGAGGATTATCTGGGTGAGTTTTATTGCCCAGGAGCCAGTCCCTTACTTTCTCAGCTCTTGCTCCCGGGGCCTGGGCACTCATTCTCCCCATTTCCTCCCACAGATGTCTATGTGTTTGGGGTTGGGCCTCTGGTGAACCAAGAGAACATCAATGCTTTGGCTTCCAAGAAGGATAAGGAACAACACGTATTCAAAGTCAAGGACATGGAAAACCTGGAAGACGTTTTCATCCAAATGCTTGGTAGGAAAAGATCAGGATGTTATAAAGAGGTCAGGAACCTCCCCAGGTCCCCC-AAGGTCACTCATACTTCCTCTTCTCCTTTAGTCCTGGCAGTCTGGAAGGACTTTCTCGCTGCTCCTTCTTTATGTCA-------TATTCTGGTTTCCTGGCACTATCTGCTTCCCGatcttagaatcaccgagctctgaatgacatcagagagctttcttaaattcctcattttacacgcgtggcaagtgaggctgagaACAACCTGGGGACAGCAAGCTAGCAA----GTTTGACCTGCCAACCACCACGTCTCCCATCTCTTACTTTCAAGTTCTTTTCACTATTG-----CCACAGTTCCTTGTCCTCAGTGAAAGGAAACAAACACTCCTG-TCTTTCCTTT---CCTTACAGGCTTCTGCTCCTCACAAACACGTAGATGTCCCTCCCCTTTTAAAAGGCTGCTGCCATGTGGAAATGAAGCAC-CCTACCTTTCAGCATGTAGTCAGAAATTTTAAAGTCATTTTCCTTTCTTGTTAGATGAAACCCGGACTCTGGGGCTCTGTGGAATGGTTTGGGAGCACAAGAAAGGCACTGATTACCACAAGCAGCCATGGCATGCCAAAATCTCCATCACTGTAAGCAAGGCGTCCTGGTGCCAGGGACCTGTGGGAGGCAAAGTCAGGGTGGAATGGGGGCGGGGGAAGGGCAAAATGTTTATACTAGATTGTGGTTTG-GTAAGCTGAGCTTTCCC-CTCTGTCGTTCTGTTCCCAGCGCCCTTCAAAGGGACACGAAACCTGTATGGGGGCTGTGGTGTCTGAGTACTTTGTGTTGACAGCAGCACACTGTTTCACAGAGAATGATCAGAAACACTCAATCAAGGTCAGCGTGGGTAAGGAAGCAGCCAATCAATCCTGAGCTTCAGCTGTGC-----AGGAA------CCCACGCTC---------------CCACCCGTCCTCACAGCAGCCCACTATCTTGCACACTGGGCCACTTGGGAGTGGGGAAGACTTGGGAGTTAGGCACAATGTGGGGCCAGATGTAGGAGGCTGCCCATGGAGAAGTGGGACGTCCCGACATAGCCACTTTCCTACCTTAGGAGGGAAGAAG---GAATTGGAGATAAAGGAAGTCCTAGTTCACCCCAACTACAACATCAATGGGAAAAAAGAAAAAGACATTCTTGAATTTTATGACTATGACGTGGCCCTGATTGAGCTTGAGAAGAAGCTAGAGTATGATCAGACACTCAGGTGAGCCC-TCTGGAGCCCTGAGAAGTTTGGGTGAGGTGGGGCCGCAGGCCCAGGGCA--GAGCCAAC-----------TTCTCCCTGAATCTCATCTCTCCTTCATAGGCCCATTTGCCTCCCATGCACTCAGGCAACAAATCAAGCTTTGAGGCTTCCGCCGTCAACCACGTGCCAGCAGCAGAGTAAGATGTTCAGGGACAACAGCACAAGGGGATGCTACCAGGGGACAAGTGGGGCGTGACAGGGTGCTGCAA---GAGCAGATTGTGGCCAGCCTGGTCCCTAGCTCACAGGAAAGGGTTGGGGGACATTTGCTGAGTGACAAAGCCAATGGGGAGGTGGCTGGGTAGGGTGGGAGAGGGCTAAAATGACCCAGTCTGTCCATTTGCCCAGTGGAAGAGCTGCTCCCTGCAAAGGACATCAAAGCTCTATTTGTGTCAGAGTTATCCAAAGACAGGAGGAAGGTGCTGGTTCGGAAGGAGGTCTACATCAAGAATGGGGACAAGGTAAGGAATGTGGGACTCTAAGCAGGTCCTCCAGGCCCCAGTTCTTCCAGAGCACACTCTATTCACCCTTTCCCCTCCACGCTTTATACCTCATCTATAGAAAGCCAGCTGTGAGAAAGACGCTCAGTATGCCTCCGGCTATGAGAAGATCAAAGACATCTCTGAAGTGGTCACTCCCAGGTTCCTTTGCACTGGAGGGGTGAATCCCTATGCTGACCCCAATACTTGCAAAGGTGAGAAAAGGCTCTTTGGTTGTGCTGCATGTTCCTGAAGCCCAAGAATTGCTCTCCCTACAGCTTTTCCTCTCCT-GTAGGTGATTCTGGTGGTCCTCTGATTATTCACAAGAAGAGTCGCTTCATTCAAGTGAGTTTCCCCTCTCCTGTCTGTGGGGAGATGCCAAGTGGTCAGCATGGACCCTACAGCAGGAAAGCTCCGTGCATGTGGCCTGAAA---GGGGAAGGCGCAGAGCCTGCCTCCTTACAACCATTCCTTGAAATGGCTGGCTTAGGTCCATGTGTCTGGCCCGTGTGCTTGGGAGACCAGTACAGAGCTGGGTCCCCAGTCTAATTCTTCTAGGTCAACTCCAATGTAACTGGGAACAGCTGAGCTTCCTGCGATTAGGAAGGAAGGAATTCTACCAAATGATCCATGGCATCCCCTTGCCCTCTCCAGGTTGGCGTGATCAGCTGGGGTGTAGTGGATGTTTGCAAAGACCGGAGGCGGTGGCAGCAGGTACCTACTCATGCCCGAGACTTTCACGTCAACCTCTTCCAAGTGATGCCCTGGCTCAAGGAGAAACTCAAAAATGAGGATTTGGAATTTCTGTAAGGGGTTCCCTGCTGGGAAGGGGTATGAGATAAAATTAAAACAGCTGCGACAATACCTGTGTTCAAGATCCTTTTGGGAGAAAGAAGAGGGGAACGTGCACTGGCCATGT-GTTACAACTGAGATAAAATCTAACAGCTGTTTTTAAAGGCTCAACCCCAATCCCAAGTGCTGAAAAACCAGAGGCTGAGGGAGATGTGTGAGCTTCCACCTCAGTGTTTTACTGAGACCAAGTGTTGGCGCAGATGAGGCACACGGAATACAGCTCCATTCCCTAGAAGCCATCCACAAGGTTTTCCTTGTAGACATCATCGCTGTAGACAATCTGGGTCCTCTTGTCCCGATGGCAACCCTTAGGGCTATTCTGGACAGCTGGGGAGGGAGGAAAGGATCGGTTAAGGTCTAAAGCATTGCATCTGAGCACTAGTGAGGCCAGAGGCTCAGAGTCTGACCAGCTCACTCCCGGCCTCTGG-CTCTCGAAGCCCAATTTCAATGCTGCCCTCTAGCGGCCAGGATAGCCTGGCTCCCTTTAGCCCCATTAGGTGGGTGGCTGCCAACCCATCCCCGTGGCTAGGAGTGGAGGCTGTTGTTGTGGCCTGCACAGATACCATTAGGGATATTTTGTTCTTAGAACCACCCCAGATGTTATTGTTTACACAAATGAATGATGTTAACCCATTACATTTTAAAGT-------------ATTAAAATTTAAAAAATCTCTGTAGGCCTTTGCTGACATGCTAGTCATTTCTTGTTC----CTTTTGTATGGAGGGCCACTCTTACTCTCAACACCCCTTTCTGCTTACCCCTTTGCCAGGAAAACCAA----CAGGTATAGTGGGCTATTCAGACTAAACTAAGAAATGCTACTAGACCCAACGGGAGAAC-CATTCTGGGTGCAGCTCTGACCCAAAGCATTCTTCCGCCAGCCTCAAGCTATTCTTTCCCCTT-CTTTTTCCTCCCTACACT-GACATGTCCCTCTCTTTACCCCATCTCCAAGGATTCCATGCCTACCATTCTGGGGCTACAGTGACTCACCCCAAACCAGCCTCCATTCTCTTGGATCTCTGTACCCTGACACTGCTGATCACTCCCCTGCTTCCAAAGTTTGTGTCCTTTGGCTTTAATGGCT---GCCCCTTGAATATT-CCCCAAGCC------------------------------------------------------CAGGCCTGGGTAACTG----------------------------CCTGCCTGC-------GCCCC------CTCCCCAAATTCAGTC--------------------------------TCCCTTGAGGATACTACCAATTTGCAGCCACTCTGTAACACAGAGGACTCCAACCCATGTTTTCATTCCTCACTTCGCACCCAAGTTCCAGATCTCTAATTTCAAATGTTTATAAGACCAACTACACTCCATCTCCTAATA---AAGCCACGTGAGATGCCCATTTTCTTCACCAACCTCCCTC--ACTTCTATTTTCTTCTGCATTCCAGTTACTGCTTTGGGAGTTATTCTCAATCTTTTTCTCTCCGTTTTCTCCCACTTCTAACTGACAGAAGGCCTGATAATTCTCATTCCCATTCCCACGGCCTCCACACAGATTCAGGCCTCTATCAACTCCTCAGAATCCTGGGACGAGCAGGGAACAGGCAGGAAGGGTGAGCTGTGGGGCACAGGATGGAGGAGGAAGAAT-CCATTCTTACCGAGAGAGCCCCAGACAGACTTGCCAGTGGCAGCGTCCAGCATGGGCTGCTTGCGGGCAATGCTGACTTTGAGCTGTACAGACTCCACCTGGGTCCCATTGAGCTGGGGCAGAAGAGGGGAGGAGGCAAAGGATGGGGAG--AAACATTGCAGACAAAGCAAAGGAGGAATTCCAACAGTTGCCACCCTAGCAACAGACTGA-----GGACCTGAGATTACA---TTTCTTGTGTGAACAGGAAGAGAC--TCTTTGTCAAGAGGAAATGATTTCCTCCTGGCTCCCAGTATTTTAAAGAGAAAATATGAGGATGGCAGGAGGGATGGGGAGAACAGATCTGGGAAGTCCCAACCTCAGCAACGGCCTGATCTGCTGACTCCATCTTTTCATAGGTGACGAAGGCACAGCTGGGATGAAAAGAAAACAGGGTCAGTATAGAGGGCCTATGGGCTCTTGTGAACCCAACCAAACTCAGTGCTCACAGGCCGTTGGAGATAGGCTGGTGTTCTCCCTCA--------AACCCAGG-TCCTCCCAGGACTTATTATCTTACCCCACTGTCATCCTTACTTTCTGGGTGGGTCCATGGAGAGGTCAATGATGTTTCCAAAGGGAGAGAAGGCCCCACGAAGGAGGGTGGGCGTCATGTCCTCTCCATACACATAGAGAGTATTACCCTTCCGAGGGGCCCTGCGTTCAGGGAATGAATCCGACCCTACGGGACCAGGAGTCATAGTCATAAGACGCAATCCATTTCAGCCTCTACTTTAAGAGGCCACTTTCCTAGGACCTGCCTAAACATT-------TTCACTTTTCCCACTAGCCCAGATCACTCACTGCGGAAAGGGCCCtctcgttctcgatcgcggtccctgtcccgatcacggtcc------------------ctgtcccgatcgcggtccctgtcccgatcgcggtccctgtcccgatcacggtctcgatcccgttctcgatcacggtctctgtcccggtTCCGCTCACGACTGTGGTCCCGGCTGCGGCTTCGTGGGGGGGAGGTTGAGGAGCGGGCACCACCACGTTCTTCATAGCCCCAGTCAAAGCTTCGAGGGGGACCATCACCAGCCCCTGGGCCCTCTGCCTCCTCCCCATCTGGCCCCAGTTCCCGAAGCCGATCACTGGAAGACACAAAACTGGAGAAAGGCAGACAGTGAGGATC-AAGGGGGCCTTTACCTCAATCTTCTAGACCCTGGGAAGACTTAA----CCTACTGCAGCCCCAGTTTCTTCCACTCCAGCCCAAACCTCCCATGGATACAGGCAATCACCCCTTCCCCACTCCCCCAGTTGGGACCCAGTCGTCTCTCTAGTTCTCTAACCTCTCATACAGAGATTTCCTTTGGGGGCGTCTGGACGACTGCAAAAGAAACCAGGGACAGTTAAGATGAGTCCTAGTTGCTGGCATATGGCCCCAAATATGTGTCT-TCTTGCTTTTCTCATTCCCTGGGCCCCCAGGGACAGAGAACTGGGAGCC-ATACCTCCTGCAGATCATCATCGGCAGATATGCTTCTTTGGAACGGCTGGAAAGTGGGAACTGGCCCCTTCTCAGGGTCCTGGGAAGGTCACAGAGATCTACTTTAATGTGAGAGCAGGAGGAGGCCTAACCACGGGGCAGAAGGAGTTCCTCTTCCCTCACCCTCTTCTTGGTTTCCTCTGGCCTCTCTTTTCTCCTTTAATTCCCTTGTGCATTTCTTATTTG a score=292056 s hg19.chr6_ssto_hap7 3256863 5890 + 4928567 GTAttttttataagtgactcgatatattatgtattcagtttatttgaacctctcttgaacctgataacattttcagccctttccatcccttagggcaacatattccaagagctCCAATCCAAGGTGGATtagaaccacagaatttgtaaaatggagaattcaggagtcgtctagttttttcattttatacatgagagg--tgaaactcagaatggtacagcaatttgccAGTGCTTGAGTATGCA-TATTTTTCCCCAA--ACCCATCTACATTCCAACTTGGAGGGATGCCCT-----------------TTAAACAATCTTTCTGCTTGTGCTCACCTTTAACTTCCCCTCAAGGGTTCGAGAACGCTTGAAGCCTGAGTTCTTGGTCTCAGCCTTGATGGCACTGATGGCTCCTGACTTCACCAGCTGCTTTGCCTGCTCTGTTGCTGTGGCTGTGTCCATGACAGGCTGCTCTGATAGTGCTGGAGAGACAAGGGGAAGAGGCATTATGTTGGCCAAGCCATGATGAAGGTCAGCTCCATGCTGCCCACTTCCAGTCCATCCCCATTTCCCCTGTCACTCACAGCGTTTGACACCACCTTGGCTGGTTGTGCTGCTGCTACTTTGCTTCTTCAGAGCCAGCAATGCCTTTTTCTGGGAACAAGGGTGAGAAGAGAGAGGTAAGTGAGGGCCAGCCCCTAGCCGGTTCCTCTCCTAAGGCCCCTGGGCACATCACTCCAGGGACCGTCTTTCT----------------TGATGCCCTCAGAGTGGTACACTGATGT-GCTCTGCCTCTTGCCTCTGGTCCCCTAGATCATGTATGATGCTGGAAATTCCTAATCTAACCAAACCACGGAACCCAGAGGTTTTCCAGAGTGTTACATTTTTGAAGTTGAAGACAAATAACTCAATCATGGACTAGAATCCTAGGATATAAGCTGCAAGTAAGTATAAGTTTATGTGCCTTTCCTGGAAGCTTCatccatctatttcctgcatattgaatgaggcccagccatgacttcgtaacagggatatccaggaggctaatgcattgttcctaccctcaagaagcttacagtctgagaaataaaatacattgagttagcaat-----acaattataagaggtgcagattattcataGCTGAAAGCTAGTAAGATTTTCTGATGTTTAATGGCTATTAAACTAGGCCCTCTCCCGTATCTCTGCACAACACAGAGAGGAGAAGGGTATTTTAGAAAAAGAAAACAGGGTGGCAAAGATGCAGAGATAAGAAGGCTTTGGGAATGCATCTTTTGGAAGTAGTGAATAGTTCTACTTTACTAGACAAGGCTGCCAAACTAAGGTTTTGAGGCTTTTTTATAGACAATGTGAAGCCATTTATGGTTTTTGAGAAACAGAGGGAGCAGAATTTTGTGTTTTCAATGGATCATTTGAACAGGAGTGAA-GAAGTCTGTTCAAAAAAAAAGACTGAGAAATTTGTTGAGAGACCATTACAATGGCCCACATGAATGTCAATAAAGCCCTGCTCGGGGGAATGCACAGTGAAGAATAAACAGGAAAAATTACTTCAAAAGAAGAAACAATAAGACTTGGCAAAGGTTTGACTATGCAAATAGTGGGGAAGTCAGAG------TTTTGAGTCCAAACATGTGGCAGAATTGG-TGTAGTCAATCTTATTTGGAAGATCAAGA---------------------ATAGAAAGATGATAGCTTCAACACTGAGTATCTGAAGTTTTTCAGTATAACACTGGATAgaactggaaaaaacaaacttggggatcatcagctcttaagcggtactaaaagccatgggaaaggaagacaatccatggcaaattgcatagaaaagacagaaggtccacaccaaggcttggga-aagcccaCCTCT-CGAAGCTACACTGTGAGGTGATATGTCTCTAGGTATGGGCCAGAAAAACTTCCCCATTCGCTCACACTCACCCCATATCTTCTCAG-AGTGCAGAGTCTGTGAAAGGTTAGGCCATGTCCACACACAGTCCCTCACCTTTTTCTTGAGCTTGTTGAATTTCTTCTGCAGAGCCTCCTCTTCCTCGCTCAGTCCGGGGGGTATCACCAACATGGTGGCTCCTAGTTCAGGGGCAGGGCCCAAGACATCTTTCTCCACTGTTACCACCCGGGGTTCACACGCCGTCCACACTGTACCCAACCC--CACCCCTTCAGGTCTGCCTACTCTTGTCTTTGG-CTTTCCCTACCCCTTGCTTAAACCAGGCTGCTGTCCAAGCTCCCGCTGGTCGGGATCATCCAGCATTCCCTCCTGTCTCCAGGGATCACAGACACCAGCACCTTTAGGTACCATGTGGTTCAAGGAGGGACAAATATCCACTCCGTCGGAAAGACGATGGCACCCGAC-CCCCCTACCCTCGCTAGGGTAAGGACAACCGCGGGGTTTGAACGGCAGAGAAGGCGGTGGAGCCAGCGTAGCGCCCGCAGAGCAACGCAAAGAGGAAGAACAGAGAAACGGCTATGAGAAAAAGGGCCGAAGAGTGAGAAGCAGAGGGCCTTACCCGAGGGGGCGGCAACCGGGGGCCCCACGGTCTCCGGCCGCGCCCGCGCTGGCCGCTGATAGCGGGCTCACAACGATGACGTAGCGAGGAGCGGAAAACGCGGTAACCAAGGCGGCCCCAGGC-GCGCACTTCCGCCCGGCCTTCCACCGGTCCAGGTCTGCCCCTCCGCAGCGATAGTTCACGCTCTCGGCGGGGCTGTAC--CGGAAGTTGCCTCTACTTCCGCCCGTTCCGGGGCGGGGCTTACTTCGCAGCGACTACTTGCCGCACTTCCGGGCTGCCAGGCAGCTGCTGTGGCTCCAGGATGATGGAGACAGAGCGACTTGGTGAGGGGGAGGGGAGGGAAATGGAACGGAGTAGCCGATATGGAATGAACTTTGACCCCTGACTTTTGACCTTTC-CCCGTAGTGCTACCCCCTCCAGATCCCCTGGACCTACCCCTTCGGGCCGTGGAGCTCGGATGCACGGGGCACTGGGAGCTGCTGAACTTGCCTGGAGCTCCAGAGAGTAGCGTGAGTGACTTTTGACCCTAACCTTTGACCCGCATTG------------AGTCCAAACCTCCTTCACCCTCCTCACAGTAGGATCTAGCTTAACCTTGTTCATCTGTGCCTGTACTCCTGTCCATCCCAGCCTGAAGGGGTGCTGGACAGATTACAGCCCAGTGTACCTGCAGTA-CGTGTGAGGACAGAGCAGAAAGGGCTGGGGATATTTTTGCTTTGAGAGCTGCTCTTTCAAATGTGGCATTTCTCCGTGGAGCTCCCTTCTGTATCCAAGCACCAGGGCACTTGGTGACTGAGATGATAGGCTTTGAGCCTCCAACCTTTCATCCTTAGGTCTGGG---ACCCCTTTTTCTAAAATcagtgagtctccaatttcagtgtgcttcatgatta--------gccagggagctttttaaaaatgcacattcctaggtccagcctccatgtttctgaA------------------ATCCAAAATC--TGCCCCAGGTAATTCAGTAGCAGGTAGTT--------------------TTTGGCCAA----------GCCTGATTGTCCTAGTCTGTTTGACACATCTGCCATTTCTGATCTGAACACAAGTCCCATCATCTCTTTTGTCTGCATTTTATCCTCTTTCCTTACCTAATGCCTCTCATCTTGCCCTTGTTTCAGCTTCCCCATGGCCTCCCTCCTTGTGCCCCAGATCTGCAGCAAGAAGCAGAACAGTTGTTTCTGTCATCCCCAGCCTGGCTGCCTCTGCATGGTGTGGAGCACTCAGCCCGGTGAGGAGTCTGGAGGGGCTTAGACTAGGGTGATGGGTTCCTGAAGGAAGCTGGGACAGAGGAAGAAAGAAGACCCAAAAGTTACTATTTTTCTCTCCAGAAAATGGCAGAGGAAGACGGATCCCTGGTCTCTTTTGGCTGTCCTGGGAGCCCCAGTCCCATCCGACCTACAGGCCCAAAGACACCCAACCACAGGCCAGATACTGGGTTACAAAGAGGTAGGAGGTCAGGGGTCATGAGAAACAGTTGGGGAGAAGGGGAGGTGGTCAGAGACAAGCTCAGCCTCATTGGGGCTCTGATCTCTTGCCTTAGGTCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTCCTTGTCTCTTCGCCGGCCTCCAGGGCCAGCCTCCCAGTCCTTATGGGGAAATCCAACTCAGTATCCCTTCTGGCCAGGTGACTCTTGTGGAGATGGGATGGTAGAAGAGGGTGTCTTTAATCTCCAGGGAAGGGTTCCCCACCTATCTCGTATTACCCTCATCCCATGAATCCCTGTCTGTCCTGTCTCTTCCCAGGGGGGATGGATGAACCCACCATAACAGATCTGAACACACGGGAGGAGGCTGAGGAGGAGATAGACTTTGAGAAAGGTAAGGTG-------------------------GGGCTCTGAGTCTGAGCCTTGAGGAGGA-AGAGCCCAGG-CTATCACTgggctactgc-tagccctcccatgtttttgagaaaattagaaaaagatattctgtccataacaacctttactgtcatctgctgggaaatttctacaacaacctttactgtcatctgttggaaaagtgtcatagcaaacatccctatctacagcatctgtcctgtaaatggtatcttttaggtttatataatgtacacaatttgttcaccagtgtg---caGTGACCTGATTCCATGTCCCTA-----TCCTACAGATCTTCTTACTATTCCACCTGGTTTCAAGAAAGGCATGGACTTTGCACCAAAAGGTTAGTTTTAGTTTTTGAGTGGGGTGTAGGAGAAGTCATGTCCTTCTCCTAAGGAACAGAGATGGACATGACAAGGTTGACCTTGTTGGCTTGCTCCTCAGATTGTCCAACTCCAGCTCCTGGACTACTAAGCCTTAGCTGTCTGTTGGAGCCTCTGGATTTGGGTGGGGGTGACGAGGATGAGAATGAGGCAGTGGGACAGCCAGGAGGTCCCAGAGGGGACACTGTTTCAGCCTCTCCCTGCAGTGCTCCCCTGGCCCGAGCAAGCAGCTTGGAAGACCTAGTGTTGAAGGTTGGTGGTTCTGTGTAGTGGAGGCAAGAAAGAGCCTTGC-----CACCAGGATGTG-------GGCTGGCTAGGATGGGTCTGAGGGGAAGAAAGGGACATCTTTTGGGAGGAGTGCTAATTGAGAGCCCTCTGGTTGTATCTTTATCACTGCTACCCCTGACTCTTCCAGGAAGCGTCCACAGCTGTATCCACCCCAGAGGCCCCAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGACGCCACCTCCCCTGTTGGTGATTTCTATCGCCTCATTCCCCAGCCAGCCTTCCAGGTACTTTGGCCCCATCTTCACACGCTCCTCTACCTCTTTCTGGGTCACACTCCCAGCCGACCCCTT-GTCTCCTCTATTGGCCAGAGGTCAGATCCATCCCAGGCCAGTCTTGGTACTCAGTCCCAGCCTCGGCTGGCTCCGGCCTTCATCCGCCCGCCCTGCGTGCTCCATGAGCAGGAGGCAGCAAGGC-CCCGCTCCTTTCTTCAGCTCCTGTCTATTTCTCTCTCCCATAGTGGGCATTTGAGCCAGATGTGTTTCAGAAACAGGCCATCCTGCACTTGGAACGGCATGACTCTGTCTTTGTCGCAGCTCACACATCTGCAGGAAAAACAGTTGTGGCTGAATATGCCATTGCCCTGGCCCAGAAACACATGACACGGTATGAGTTCCTTTGCCAACCTCCCCCTTCACCAGCCAGCCCCATTTTCTCCTGCATCCTTTGAAAATCTCATCTCTTCCCCCACCTCTCTAGCTCATCCTTTAAGTGAGAGGTTCAGGGCTAAGACTGAGACAAGAGCCCAGAGAGAAATGAAAAGACATGGTGGGGAGAAAGTTTAGAAGAATGACCTGGGTTAGTTTAGGAAGGGGTTG s canFam2.chr12 4412499 5844 + 75515492 GTATTTTTT-TAAATGATCTAACATAAAGAATATTTAGCTTG-TTGAACGCTTCTCAAATCCGCTGACCTCTTCAATCTATTCAGCTTGTCAAAACAACAAAATCTAGAAGCTCGA--CTATGGTAGATCAGACCCAGAAAACATGTAaaat---gaactgagaagtcattcagtgtcttcactctatagatgagaaatctgaagctcagacctataggacaacttgcccGTGATTGAATAAACGCTATTTTCCCCCTATGTTCTACCTCCCTTCTGACTTGGAAGGATGCCCTCTGAAGTCAAGGGTCCCCTGAACAATCTTTTTGCTCATGCTCACCTTTAACTTCCCCTCTAGGGTTCGAGAACGCTTGAAGCCTGAGTTCTTGGTCTCAGCCTTGATGGCACTGATGGCTCCTGACTTCACTAGCTGCTTTGCCTGCTCTGTTGCCGTGGCTGTGTCCACCACAGGCTGTTCCGACAGTGCTGGAGTAGTAAGGGGAGGAGGCATTATTTTGGCCAGGCTGTGAGAAAGCTCAGTCCCACTGTGCCCACTTCCAGTCTATCCCTGTCTCCCCGGTCACTCACAGCGTTTCACACCGCCTTGGCTGGCTGTGCTGCTACTACTTTGCTTCTTCAGAGCCAGCAATGCCTTTTTCTGGGAACAA--GTGAGAGGAGAGGGATTGGTGAGGGCCAGTCCCCGGCCAGGTCTTCTCCCAGGGTCCCTGGGCACCTCACTCCAGGGGATGCCTTTCTCAGAAAACAATGCAAATAGTGTTCCTGGAGTGGTACACTGAGGCAGCCCTGCCTC--ACACACGGTCCACTGGATCATCTATAATACCAGTAATACTTAATCTAGCCAAACCACAGTATTCAAAGGCTTTCCAGAGTCTCAGGTTT------TTGAAGACAAGGAATTCAACCATGGGCCAGAGCCCCAAGATATAAGCTGCAATTAAGTATAAGCCTATATGCCTTTCTTGGGGGCTTCATCCATCCATCCCCTGTACGTTTGGCAAGGACAGACTATGACTTTGTAACAAAGGTatgcaaaaatacgagacacagttccttccctcaagaagcttacagtctATGAAACAAGATGATTAGAAGTAACTATCAAGAATGATTGTAAGAGGTGCAGACTGCTTGCTACTGTGACCAAGTAATATTATCTCATGCCAAATGGGTATTAAACTGGTCCCTGGATAGAATCTACACAAAACAGATTGAAAGAAAGGGCATTTTAGGCAAAG-TAACAGGATGGCAATGATACAGAAATAAGGTGGCTTTGGGAATGCATGTCTTGGGACTAGTGAATAGTTCTATTTGACTAGAAAGGGATGCCAAGGTAAAGGCTT-----TGTTCTATAGACAATGGGAAACCACTTACGGGTTTTGAAAAAAAGAG---------TTTTGTGTTTTTAGTGGTTCATTTTAATAAGAGTGAAGGAAGCCTGTCCAAAAAAAAAAATTGAGAAACTTCTCGAGAAACCATTACAAGTGTCTACATGAA---CAACAAAAACTTGATCTATGAAATACACAGAAAAAAGCAAACAGAAGAAGTTGCTTCAAAGGAAGAATC---AAGACTTGGCAAATGTTTAGCTTTGCAA--AGTAGAGAAGTCAGAGATGAGATTTTGATTCCAAACACCTGGAAGAATTGGCTGTGGTCACCCCTATTTGGAAGGTCAAGAAAAGGAACTAAATTAGAATAGATAGGAAGGTGACAGCTGCAACCCTGGGTATCTGAGGGCGATCGGTAACAGCCTGGATAGAACT-GAAAAAACAAAGTAGGAGGTTAC---ATCCTTGGTGGTGCAAAAAGCCACGAAAAAGGAGACTGCTCCACAGCAGGATGCACAGAAG----AGAAGGTGCACACCGAGACTTGGGAGAAGCCCAGCTCTATGAGGCCACGCTAAGAGGAGCTACATCTCCAGGTATGAGCTAGAAGAACCCCCCCATCCCCTCACACTCACCCCAGGTGTTCTCAACAGTGTAGAGTCTGTGAAAGGTTGGGCCACGCCCCGACACACTCCCTCACCTTTTTCTTGAGTTTGTTGAATTTCTTCTGCAGAGCCTCCTCCTCCTCGCTCAGTCCGGGGGGTATCACCAACATGGTGGCTCCTGGTTCAGGGGCAGGGCCCAAGACATCTT--TCCACTGTCACCGCCCAGGGTTCACACGGGATCC--------CCCTGCCCCGCGCCCCTCCAGGCCTACCTACTCCTGTCTTTTGCCTCTCCCTACCCCTTGCTTCAACGAGGCTGCCGTCCAAACCCCCGCTCGTGCGGACCAACCAGCACTCCCTCTCCTCTCCGGCAATCACGGCCACCAGCGCTCTGAGGAACCAAGTGGCCCAGGCAGGAGGAAGCACCCCTTCCGTCGCCAAGACGATGGCACCAGACACCCCCTACCCCTGCTGGGGGTACGGCAGCCGCACGGTCCAAACGGCACAGGAGGCAGTGGAAGCCGCGCAGCGCTCTCACAGCAACGGAGAGGGGAAGAAGACAGAAG-AGCT-CGGAAAAAAGGGGCGAAGCGTGAGAAGGAGA---CCTTACCTGAGGGGGCGGTAACCGGGGG-CCCACGGTCTCGGGCGGCGCCCGCGCTGGCGGCGGCGAGCGGGCTCACAGCGATGACGTA-CGAGGGGCGGGGAACGCGGTAACCAAGGCGGCCCGAGGCTACACACTTCCGCCCGGCAGTCGCCCGGCTCCAGTGAGCTTCTCCTTGGCGCTCAACGCCGCTCCCGGCAGGGGTGTGTGACGGAAGTCGCCTCCACTTCCGCCCGTTCCGGGGCGGGGCCCGCTCC---TCGGCTCCTCGCTGCGCTTCCGGTCTGC----CTGCTGCCGTGCCTCCGAGATGATGGACACCGAGCGACTCGGTGAGAGGGAGAGG-GTGAGACGAA--GGAGTAGTCG--GAGGGGTGGCCCTTGGCCTCTGACCTCTGACCTTCCTCCCGTAGCGCTCCCTCCTCCAGATCCCCTGGATCTACCCCTTCGGCCGGTGGAGCTGGGATGCACAGGGCGCTGGGAGCTTCTGAATGTGCCTGGGGCTCCAGAGAGCACCGTGAGTGCCTGTAGACCCTGACA-TTGACCCTCCTTAGTGTTGCACCCTAGCACAAGC-----TCATCCTTCTCCCTGGAG------------CCCTG-TCATCTGGGCCTGCCTTC-----------------------TGCTGGACAGACCCCAGCCCGGTGGA----CAACATCTTGTGAAGACAGAGAAGGGAATGCTCCACATACCTTGGCTCTGAGAGCTGCTCTTTCAGATGCGGTTTTCCCCTTTGGAGTCAC---CTGTCTCCAAGCACCAGGGCA-TTGATGGCC----------------AGCCTTCAACA----------AGGCCCTGACTCCCCCCTTTTCCTAAAACTGGTGTTTCTCAAACTTAAGTGTGCCTTGTAATTAGTGTATGTGTGTGTGGGATTTTTAAAAATACAAATTTCTAAACCCAATCACAGAGATGGCGAAAGTATTGTATCGTGACTTATTAGTGATCATTGCTTCAGGTAAACCAGTAGCGGGTACTTTGCCCTGTAAAACGGGACAGTTTGGAAAATATTGCTTCTGCCTGACTCTCCTAGTCGGTCTGGAAAGTCTACCATTTCTCATTT-AACACAAATCCTATCATTTTCTTTTT----------TGCTTTATCCATACCTAATGCCTCTCATCTTGTCCTT-CACCAGCTTCCCCATGGCCTCCCGCCCTGTGCGCCAGATCTGCAGCAGGAAGCAGAGCAGTTGTTTTTGTCATCTCCAGCCTGGTTGCCTCTACATGGTGTGGAGCACTCCGTCCGGTGAGGGGTC----------TAGACTGGTGAGAGAGGCCCCTGAAGGAAACTGAGACAG-GAGAGAAAGCAGACCTGAAAGCTGTTTTCCTTTTCTGCAGAAAATGGCAGAGGAAGATGGATCCTTGGTCTCTCCTGGCCACACTGGGGGCCCCAGTGCCCTCTGACCTTCAGGCCCAAAGGCACCCAAACACAGGCCAGATACTGGGCTACAAAGAGGTCAGAGGTCAGGGGCCACAGGAAGCAG-------GGTCGGGAAAGGGTCAAAGGCAAGCACAGCCTCACTGGGATTGTGGTCCTTTGCCTCAGGTCCTGCTGGAGAATACAAACCTATCAGCTACAACCTCCTTGTCTCTTCGCCGGCCCCCAGGGCCTATCTCCCAGTCCCTTTGGGGGAATCCAACACAGTACCCTTTCTGGCCAGGTGA--CTTGTGGGAATGGGATGGTAGGAGAAGGTGCCCTCAGTCTCCTGGAAAGGGTTCCC--CCTATCCCGTATCA-CCGCACCCCACGAAT-CCTATTTGTCTATCTTCTCCCCAGGTGGAATGGATGAGCCCACCATAACAGATCTGAGTACTCGGGAGGAGGCTGAGGAGGAGATAGACTTTGAGCAAGGTGAGGTGGCGCCAGGATGGACCCTTGGGAGCAGGGCTGTGAGTCTGGACCCCGAGGAAGAGGGAGCCCAGGCCCATCGTTgggctgctgcttagcccttctgtgtctttgagaaaattaggaaaaggcatccttgtcattacagtttttactgtcacctgctagaaagttgtgcagactact-----------------------tgcgactgtaagtagccccatttgcaacatctgtgctgtgaagggcatcttgtaggtttgggtaa--catatgacttgtgtgacACTGTGTCATAGTG--CTGATTCTGTGTCTCTGTTCTTTCCTTTAGATCTTCTTACGGTTCCACCTGGCTTCAAGAAAGGTGTGGACTTTGCACCAAAGGGTGAGTTTTAGTTTTGGGATGGGGTGC---AGAAGTGGTGTTCTTCTTCTGTAGAACAAAGGTAGACATCACCAGGTATCCCTTTTTACCTTGTTCCTCAGATCACTCAACTCCAGCTCCTGGCTTGCTCAGCCTCAGTCATTTGCTGGAACCTCTGGATTTGGGTGGGGGTGATGAGGATGAGACTGAGGCAGTGGGACAGCCAGGAATTCCCAGAGGGGACACTGTTTCAGCCACCCCCTGCAGTGCTTCCCTGGCCCGAGCAAGCAGCTTGGAAGACCTAGTGTTGAAGGTTGGTGGTTCTGGGCAG----AGAAAGAAGGGGCCTTACTGAGGTGCTAGGGTGGGATGGGGTGGCTGGCTTGGTTGGGTCTAAGAGGAAGACTGGAGTATCTTTTGGGAGGGGTAGTAATGAATAGCTCTCTGACTGTATTTCTGTCATCCCTGCCCCTGGCTTTTGCAGGAAACATCCACAGCTATATCTCCTCCAGAGCCCCCCAAACCTGTGCCTCAGGAGCAGTGGGCGATTCCTGTGGATGTCACCTCCCCTGTTGGTGATTTCTACCGCCTCATTCCCCAGCCAGCCTTCCAGGTAGGGTGGCCCAGTCCTCACATGTTCCCCTGTCTC-------------CTCTCCGCTGTTCTCTTCATCTCCTTTCCCCACCC-AGGCCAGATGCCTTCTAGGTCAATCTTGGACCTCAG-CTTGGCCTGGCCTTGCTCTGGTATCCCACAG-CCACCTTGCATGCCCCAAGAGCTGGAGGCAGGAGTGCTCTTTTTCCCTTGTCCGTCCACTATCTATTTCTCTCTCCCACAGTGGTCGTTTGAGCCGGATGTGTTCCAGAAACAAGCCATTCTGCACTTGGAGCGGCACGACTCCGTCTTTGTCGCAGCTCACACATCTGCGGGGAAGACAGTTGTGGCCGAATATGCCATTGCCCTTGCGCAGAAACACATGACGCGGTACAGGTCC---------CCTCTGCCTTCACCAGCTGGTCCTGGGTCCTCCTGCACCCTTTCTGAGTGTCATCTCTT-CCCCACCTCTT--ACCGGTCCTTCAGATGAGAGGTCTGGGGAGAA-ACTGAGAT-AGGGCCAGAAGTGAAGTGGGCAGGTGTGGCAGGGATAGTGGTTAGAAGAA-GACCTGCATTAGCTTTGGAGGGGATTG a score=145529 s hg19.chr6_ssto_hap7 3262753 2572 + 4928567 GGGACAGAATTTTTCTGGGGTTATATCATGCAGGAGAATGTAAGGGCAGTTTGGGTGAAGAAGAGGAGCACCTGAGCTTCTGGGGCATGCTTCCACGAGGGCTCCATGTGGGAGAGGAAGTGCGGGCCATGAGTCTGCGGAGGGACTG----GCTAACTTCATGCTCTCTTCCCAGCACCATCTACACTTCGCCCATCAAGGCCCTGAGCAACCAGAAGTTCCGGGACTTCCGAAACACATTCGGGGATGTGGGGCTGCTCACCGGGGATGTACAGCTGCATCCGGAGGCCTCCTGCCTCATCATGACCACAGAGATCCTTCGGTGAGAGATGGACACTCAATACAGG-GGAGTTTTGGCTGGGAAGATGTGGCCGTTGTGGAGAGTGTGCTGTCTGAGGAGTGGGTGGAGAC--GAGCCACTGGGGAGTCAATCCTTGGCCTCTTCTCCCCAGCTCCATGCTGTACAGTGGCTCAGATGTTATTCGGGACCTGGAGTGGGTCATCTTTGATGAGGTTCACTATATCAACGATGTCGAGGTAAGGGCCATGGGCTCCCCAGAACCCGGCAGTCCTCTCCTTTGGGACCAGTTGAGCGTCTCCCTTATTCCACACACTC-AGGGCCCCTTACTGCTTTCTTTACCCCCATATGGAATCCTGT--GCCTCTTTATGGGCAGAAGGGCGGCCCCTGC----CCTCATGTGACCTCCCTTCCCTCTCTGTGCCCAGCGTGGGGTCGTGTGGGAGGAGGTGCTTATCATGCTACCTGACCACGTTTCTATCATCCTTCTGAGTGCCACCGTCCCCAACGCCCTTGAGTTTGCTGACTGGATTGGGTGAGACGTGTGTCCCGGGTTGCCTGGGTGAAGGGGGCTACAGTACTCCTTGATTCGGGTGGGGGACTAAGTCTACCACAGCAAGGAGAGCGGTCAGGCCTT-----------------AGGGGTGATGCTGGGGAACATGTCCCACCTGGTGGCTGTGGGATCCCCTTTGGGTCCAGATTACTTTGCATGTTGAAATGGGATGAGATGTTGGGGGATAGCCTTCCATTCTGGGTCTCAGAAAAGACTGGGTAAAGTTGGAGGGGTAGGGAAGGGGGTGGGGATGTGGGTTCCTTCCCACGTTCCCACCCCTGACCTGCTTCCCTCTCCTTTCTTCAGGCGGCTGAAGCGTCGTCAGATCTATGTGATTAGCACTGTAACCCGCCCCGTGCCCCTGGAGCACTATCTTTTCACAGGGAACAGCTCCAAGACCCAGGGGGAGCTCTTTTTGTTGCTGGACTCCCGAGGAGCCTTCCATACAAAAGGGTAAGCCTCGAGATGGGGGAAAGAGTTAGGGCTGGGCCCCCAG---CTGGACATTGTGGCTACCCCTCCCTGTGCCCCAGGTACTATGCAGCTGTGGAGGCCAAGAAGGAGAGAATGAGCAAACACGCCCAGACCTTTGGGGCCAAGCAGCCCACACATCAGGGGGGCCCTGCACAGGTGAGAACTGGGAGGGTTTTGTACCTGCCAGCACCTGTTTTTCCTCCTATCTTTTTTTTCCCCTTGTCCCCCAGGGGTTTTGACTTGAGCTTTGAGCACTGCCCCAGTTAACACTAGCTCACCTCTC---------------ATTGGTTCAGGAACTCAACCTCTGCTCCTTCCCCTTCCCCTTCCTTCTCCAGGACCGCGGAGTGTACCTGTCCCTCCTGGCCTCCCTCCGCACACGTGCCCAGTTGCCCGTGGTGGTGTTCACCTTCTCCCGGGGCCGCTGTGATGAGCAGGCCTCAGGCCTCACCTCCCTTGACCTCACCACCAGTTCGGAGAAGAGCGAGATCCACCTCTTCCTGCAGCGCTGCCTTGCTCGCCTCCGTGGCTCTGACCGCCAGCTGCCCCAGgtgcgtctgtgtgcgtctgtgtgcgtGCATGCACACATTTGGCAGACTGGTGGGGATAGGGTGTTCCGAGACTCCATCCCTGACCATGGGCCTCCTCCCACCAAAGGTCCTGCACATGTCAGAGCTCCTGAATCGCGGCCTGGGTGTGCACCATAGCGGCATCCTGCCCATCCTCAAGGAGATCGTGGAGATGCTCTTCAGCCGTGGCCTGGTCAAGGTGCATGTGGTGGTGGAA-AGGGACTCCTCAGGGTGCTTGTTGCCCACTTAGGGGCTGCCCAGAGGGCAGAGGGGcagaggtttaggcaggccagtgctgtggttaagaatctgggctctggattcagactacctgggtttgaatcccaggtacaccatgtattcacagtatcatcctggaccaattatttaaccttcctgaactttaggtttcccatctTaaaatggggatgcataagatatgaatacgtaggtctcagaaaagaaacccaggaagctagcaagcattcgaaaagttattagtaatcagaaatat-acaaattgaagtactcaca-agatacgactttacagctattagactggtaaaatttaggaaactagttcatgccgagtgttgccagagatataggaggttgtagggttctgggaatcctttacgggatgcctagccagtttggaatgcacgctggcactatttagacaaaataactatattg s canFam2.chr12 4418618 2567 + 75515492 GGGTTAGAGTTTCTGTGGGATTGTGTCATGAAGGAGACTGTGAGGGCAGTTTGGGAG-GGAGGGGGGCCACCTGAGCTCT---GGCATGCCTCTGAGAGGGCTCAGGGTAGAAGAGGCGATGTTGCCCAGGAGGCTCTGGGAGAACTGACCAGCTGACTTCATGCCCTCTTCCCAGGACCATCTACACATCACCCATCAAGGCCCTGAGCAACCAGAAGTTCCGAGACTTTCGAAACACATTTGGGGATGTGGGATTGCTCACTGGGGATGTACAGCTGCACCCAGAGGCCTCCTGTCTCATTATGACAACAGAGATCCTTCGGTGAGAGATAGGCACTCAACACGGGTGGATTTTTGGTCAGGAACGTGAGGCTGCTCTGGACAGCATGTTGACTGAGAACAGGGTGGAGTCAGGAGCCACTGGGGAGTCAGCTTCTGGCCTCTTCTCCCCAGTTCCATGCTGTACAGCGGCTCAGATGTCATCCGGGACCTGGAGTGGGTCATCTTTGATGAGGTTCACTACATCAATGATGCTGAGGTGAGAGGCACGGGAGCCCCAGACTCCAGTAGTCCTCTCCTGTGGGCCTGGATCA-CATATCCC-TAGTCCACACACCCTTGGGGACCTTACTGCCTTCTTTGCCCCCAAATGGAACCCTGTGCGCTTCCCTAGGGGCAGAAGAGCAGCCCCCTCTGAGCTGCTGGTGACTGGTCTTCTCTCTCTGTGCCCAGCGTGGGGTTGTGTGGGAGGAGGTGCTCATCATGCTCCCCGACCATGTCTCCATCATCCTACTGAGTGCTACCGTCCCCAACGCCCTCGAGTTTGCTGACTGGATCGGGTGAGATGCGTGCCCTGGGACACATGGGTGAATGGGGCTGCGGCACTCCTTGGTTGGGAGTGGGGGTGAAGACTACCACAGCAAGGAGAGTGGTCAGGTCTGTGGAATAGAGAGGAGGAAGTGGTGGGGCTGGAGTATATGTCTGACTCAGCGGCTGCCGGACCCCACTTGGGTCCAGGTCATTTTGTGT-------TGGGAGAAGAGATGATGGAACAGTCTTCCAGTCTGGCTCCCAGAAAAGTCTGGGTGAAGCCAGACG----GGGAAGGCGGCAGGGATGTGGGGTCCTTCCTACACTGTTGCCCCTGACCTGCTGCCTTCTCCCCAC-ACAGGCGGCTGAAACGTCGCCAGATCTATGTGATCAGCACTGTTGCCCGCCCCGTTCCCTTGGAGCATTATCTTTTCACGGGGAACAGCCCCAAGACCCAGGGGGAGCTCTTTCTGTTGCTGGACTCTCGAGGGGCCTTCCACACAAAGGGGTAAG-CTGGAGATGGGG--CAGAGTCAGGGCTGGGTCCACTGGGTGTGGCTGTGATCACTGACCCCCGCTATGCTTCAGGTACTATGCAGCTGTGGAGGCCAAGAAGGAGCGGATGAGCAAACATGCCCAGACCTTTGGGGCCAAACAGCCCACACATCAGGGGGGACCTGCACAGGTGAGAACTGGCA-GGCTTTGTACCTGCTACCATGTGTTTCAACT-CTATCCATTCTT--CCCTCGTTCCCCAGGGGTTTGGACTTGAGCTTTGAGCACTGTCCGACTTGACACTGCTTTACCTCCCCTCACTTTGGCCCTGACTGGTTCAGGAACTCACCACTTCCCCCTT---CGTGCCCT--CTTCCCCAGGACCGAGGAGTGTACCTATCCCTTCTGGCCTCCCTTCGCACCCGCGCACAGCTGCCCGTAGTGGTGTTCACCTTCTCCCGGGGTCGCTGTGATGAGCAAGCGTCGGGCCTCACCTCTCTTGATCTCACCACGAGCTCAGAGAAGAGTGAGATTCACCTCTTCCTGCAACGCTGCCTTGCTCGCCTCCGGGGCTCTGACCGCCAGCTGCCCCAGGTGTGGATGGGGG------------------------TCTTGGGGACTGATGGGGAGAGAATTCTCCACCACCTTATTCCTGACCCTGGGTCTTGGCTCCTTGCAGGTCCTACACATGTCCGAGCTTTTGCACCGTGGCCTGGGTGTGCACCACAGCGGCATCCTGCCTATTCTTAAAGAGATCGTGGAGATGCTCTTCAGTCGAGGCCTGGTCAAGGTATCCACACTAGTAGAAGAGGAACTCTTTGGAGCACTTGTTGCTCTCTTTGGGGCTGCCCAGAGGGTGGAGGGGCAGGTCTTTAGacaagacagcacagtggctaagaactcgggctttgg-tccagattgcctgcatgtgaatcctggctgcactacttactcaccatgtgacctcaggcaaactccttaactttcctgaactttagctttcccatcttaaaatggggatGTGCCAGATCAGCACAGGCAGTATTCAGAAGAGAAACCCCTCAAATTAGCaagtgtctgaaaagttattagtcatcagaaaaatgagaatttaaaatattcaaagagaaatgactttacagctactaggctgataaaatttaggaaaccagccaatgccaagtgttgccaaagacatcagagaCTATAGGATTATAGGAACCCTGATAAAGGTGTATAGCCAGTCTGGAGTGGACCCTGGCATT-TTGAGGTAAAA-AAAAATAATA a score=9348 s hg19.chr6_ssto_hap7 3265634 262 + 4928567 aactatatcatactctgagcttatatttcattcctgggtatatatcacaaagaaattctcaccctggtctgtgagagaacatgtacacccatcctttgtttg--------tggtggcatggtgttggtagtaccagggtgcccttcactgggagagagggaaggttagtgtgggggatgcacccatagagtgttctgcagcagttggaagcagtgggttagatgtggccacaggaacatggacagatgttg-aaacactaggtggagaaaa s canFam2.chr12 4421185 264 + 75515492 GGTCCAATATACCTTTGATCCTAAATTCCATTTCTGGATATGTAGTAGAAACAAGTT----TCCTGGTCTATGAGTGAAAATGTCCACTCTTCCTTTGTTGGCTCTAATTTTTTGGTAGGGTGCTGGTGACACCAAGGTGCTC-TCACTGGGAAAGTGAGGAGGTAATTGCCCAGGATATGCCC-CACAGTGCTCTGCAGCAGTGGGAAGCAATGAATTAGGTGTAACCATAGGAAGGCTCATGGGTGTTGAAAACACT-GGTGGAAAAGA a score=6941 s hg19.chr6_ssto_hap7 3265909 234 + 4928567 aatcag---atatataaccactttttatatgaattataaactacaagctcacaaaagaagacatgttctataagatcatatttatataaaaagatatttgttggatacattggaatgattgcagtcaggg--atgggaatgggatatgaaggtaaaagttaagaaatagaaataagtagctacataagtaaaatgagGAAAACAATAATACCTGCCCTATAGATTTGCCTGGAGAGTTC s canFam2.chr12 4422861 221 + 75515492 AATCAGGGCGTAACTAACTGCCTTGGACGTGGATTGTAAATT-CATGCACTCAAAAG-----ATAATCTGTGAAAATATATTGACACAAAAAGATACT--CTAAATATATTGGGATGATTAATGGTGGGGACATAGGAGTGAGATATGGGGGTTACA----------CAAAAGAAGTAGATGAATAGAtaaaataaggaaaatgacagcacttgcactctagatttgccatgagagtta a score=23758 s hg19.chr6_ssto_hap7 3266150 420 + 4928567 TCCCATAAGTAACAACTGGGATGGTGCCTTATGCCTACAAAGTAA------------------GGTGGGCT--TGGCCAGGGCTGGGGGTGTGTGTATGTAGAGCCTTTGCTGATCCTTTCTGTTCTCCTCTGTCCCAGGTCTTGTTTGCCACAGAGACCTTTGCCATGGGAGTAAACATGCCTGCTCGTACAGTAGTGTTTGACTCCATGCGCAAACACGATGGCTCCACCTTCCGGGACCTGCTCCCTGGGGAGTATGTGCAGATGGCAGGCCGGGCAGGGCGGAGGGGCCTGGACCCCACAGGCACCGTTATCCTGCTCTGCAAGGGCCGAGTGCCCGAGATGGCAGACCTGCACCGCATGATGATGGTGAGCGGGCCA--------GCAT---GCTCGGCAGGG----CCCCAGCTCCAGGACCTTGCTGGATTCTGTCTTCGATTCTCCT s canFam2.chr12 4423272 438 + 75515492 tgccatgagagttaaatgagat-----------cctgcaagttaaccgtctgggaccacacctggTGGTCCCATGCCCAGGGCTGGGCATCTGTG--TGCAGCCCCTTTGCTGAACCTCTCT----TCCCCCATCCCAGGTCTTATTTGCCACAGAGACCTTTGCCATGGGTGTAAATATGCCTGCCCGAACGGTGGTGTTTGACTCCATGCGGAAGCACGACGGGTCTACCTTCCGGGATCTGCTCCCTGGAGAGTATGTGCAGATGGCAGGCCGTGCAGGCCGGAGGGGCCTGGATCCCACAGGCACTGTCATCCTGCTCTGCAAGGGCCGTGTGCCTGAGATGGCAGACCTGCACCGCATGATGATGGTGAGCCGGCCAAGGTGGTGGCATGAGGCTGAGCTGGGACATCACCAGCTCTGGGGACCTGCTGGATTCTCTCTTCCAGCCCTCT a score=304027 s hg19.chr6_ssto_hap7 3266898 5120 + 4928567 GACTTTTTTGTTTTGCCTGGGAGAAGCTGAGGTAGGAGTGAGTGAATCCAAGGATGAGATTGGAGCCCATCTCTTCCAGTTTTCTCCCA-TGTgaatatggagctagatggggcctttgagtccatttatttcagtttgctcccttatgttacagaagaggtgagcaagtggtttgtccaaggccccatggttgcagagctaggaccggaTCTGACGGGAGTAGGCCCAGT--CCAGAAGACTGGCTGGGGTTCAGTAGGTCCCACC-------CTGATCTCAGTGACTTCTGTGACCTGACTCCAGGGGAAGCCGTCCCAGCTGCAGTCCCAGTTCCGCCTCACGTACACTATGATCCTCAACTTGCTGCGAGTGGATGCCCTCAGGGTGGAGGACATGATGAAGAGGAGCTTCTCTGAGTTTCCCTCCCGCAAAGACAGCAAGGTAAGGAGCCTGGGGTAACCAGTGTGTGGAGCAGGAGGTTGGCC-----AAAGACAGGCTGGGAATAGGTAGGCATCCAGAGGCCAGTGTGTTGAGGGTGGGGAGTGTGACAGATTGGGCCTGGAGACTCCCCTTTCACAGCTTCCCCTGCTCCCACCCAAGGCCCATGAACAGGCCCTGGCTGAACTGACCAAGAGGCTGGGAGCTTTGGAGGAGCCTGACATGACTGGCCAACTGGTCGACCTGCCTGAATATTACAGCTGGGGGGAGGAACTGACAGAGACCCAGCACATGATCCAGGTGAGCAAGTGTGAGTGCTGAGGAGGTGATAGGAGAAGGGAAGAGAAGATCGTGTTACTCTAGGTGCTACTAAACTTAGTCCAAGT---GTC-------TGTCCCTGTGATGCCTCCTCCCATCTGTCCTTTGCTCTTCAGCGACGCATCATGGAGTCTGTGAACGGGCTGAAGTCTCTCTCAGCAGGAAGGGTGGTGGTTGTGAAGAATCAGGAGCATCACAACGCATTGGGAGTGATCCTACAGGTGAGGGTGATGGGAATTTGGACTCCAGAGGGTGGGAGGGAGCAAG-----------------CCCTCTCTCCATTTTCCCCACTTGGCCAGGGCAGGTTGCGTCATCATAGGGCCCTCATTTTCCCCTCTTGCCCTCCTTTTCACCCTCTCCCTTCCCATCACCACATCATGCTCACTCCTTCCTCCCACCACCCCAAGAAGTCTGCTCTGATCGCTTGACTTGGTTGCCCCTCTCTACTGGTGAGCTCTGCATGGTTGCTTCCTGATTCCTGCCCAAGGGTGGGTATCTGGTCTCTGCCTTTGATGTCTACTCATCACACCCCCCTCTCCTGGCCTCTCTGACCACCCCCAGGTCTCCTCGAACTCCACCAGCAGAGTATTCACAACCCTGGTCTTGTGTGATAAGCCCTTGTCCCAGGACCCACAGGACAGGGGGCCAGCCACTGCAGAGGTGCCCTATCCAGATGACCTCGTGGGATTCAAGCTGTTCCTGCCTGAAGGTGAGAGTGTGGCAGATGTCT-GTTTTCTGCCAGCAGTATAAGCAGGATGCCTGGGTCCATGGCAATGTCTG-CCCTGCTCTCCCCTTTTCACAGGGCCTTGTGACCACACCGTGGTCAAGCTCCAGCCAGGAGATATGGCTGCCATCACCACCAAGGTGCTCCGGGTGAATGGGGAGAAGATCTTGGAGGACTTCAGCAAGAGGCAGCAGCCAAAATTCAAGTCAGAGATGCTAGGGAGGCCCTTCTCCTCCAGAGGGGCACGTAGAGGCAGGGAGGGGCAGTGGTCTGGGAGTTTCCTCCAGCCTGAGGGAGACCATGAAGTGGTGGGGTTGTAGTGAGGGGGCTCCCCCAGCCTAAGGGAGACTGTGAAGTGGAGGTTGTAGTAAGAGGGCTTCCACAGCCTGAGGGAGGCTTCTGGGGGAGAGAAGATCTTACCCCAGATCTTAAGA-TCTGCTCCCTCTTCAGGAAGGATCCTCCCCTTGCAGCCGTGACCACTGCTGTCCAGGAACTGCTGCGTCTGGCTCAGGCCCACCCAGCCGGACCTCCCACCCTCGACCCTGTCAATGACCTGCAGCTCAAAGATATGTCAGTTGTAGAGGGTGGGCTCCGGGCCCGGAAGCTGGAGGAGCTGATCCAGGGGGCTCAGTGTGTACACAGCCCCCGTTTTCCTGCCCAGGTAGGACCCTGGGTGGTAACTCCCAAGCTG-GGAGTAGGGGCT---TTTCCTCTGTGGTCCCCTGTAGACTGACCGCCCCCATCTCAGCCCTTGTCCTCAGTGCACCCCTGCTAAGGGGCAAGGAGAAGGCTGACG----------GGTGGCTCTCTGCAGTACCTGAAGCTGCGGGAGCGAATGCAGATACAGAAGGAGATGGAGCGGCTGCGCTTCCTACTGTCGGATCAGTCATTGCTGCTGCTTCCTGAGTACCATCAGCGAGTAGAGGTGGGTGGGGCAGTGGTTGGGGCAGGGGGGCT------------AGGGGACAGCAGTGTGTCCAATGCCCACCCTTTTTCTTGCAGGTGCTCCGAACCCTGGGTTACGTGGACGAGGCGGGCACTGTGAAGCTGGCAGGGCGGGTGGCTTGTGCCATGAGCAGCCATGAGTTGCTCCTCACTGAGCTCATGTTTGACAATGCACTGAGCACCCTGCGGCCTGAGGAGATTGCTGCCTTGCTCTCTGGCCTGGTCTGCCAGAGCCCTGGGGACGCTGGGGATCAGCTCCCAAACACCCTCAAGCAGGTAGGGGACA-CCACCCCTTTCTCCCTGCCAGGGCTGTGGCATTCCTGACCTTCACCTTCAGGTAGTCCCCCAGGTGA-CCCCCTCCAGCCCTGT-AAGTGCCCCAAGGATGGAAAATGGCTGCCTTCTTGATCTGGTCCTTCCCTGTCCTGGAGCAGGAAGGCA-GGCCTTAACCTCTCCTTCTTTC--CTGCAGGGAATAGAACGTGTCCGGGCTGTGGCCAAGCGGATTGGTGAGGTCCAGGTGGCTTGTGGCCTGAACCAGACGGTGGAGGAATTTGTGGGGGAGCTGAATTTTGGGCTGGTTGAGGTTGTATATGAGTGGGCCCGGGGCATGGTGAGTACCTGAGGTTTGGGATTTTGCAGACGGCTGGCTGGGGAGAACCTGCCCAGGCTGAGTGCATCCAGTCCTCA-CCCTACTTTCCCCACAGCCCTTCTCCGAGTTGGCAGGGCTCTCAGGGACCCCTGAGGGCCTGGTGGTCCGCTGCATTCAGCGCCTGGCTGAGATGTGTCGCTCACTGCGGGGGGCAGCCCGCCTGGTAGGAGAGCCTGTGCTGGGTGCCAAGATGGAGACAGCGGCTACCTTGCTACGGCGGGACATCGTATTTGCGGCCAGCCTCTACACCCAGTGAATGC--CCCATGTAAAAACATGATGATAAAACAGCAAAGCACTGTTGTGTGCTTGAGTTGCTGGACAGGGATGACTCAGCT---------------------AAGAAGACAGCGAGAGAACCTCTTAGAAATATGCTTTTATTATCTGCACACAGAGATATGACTGCCTCCCTCTAAAGCATTACTATTTGGGAGAGGGAGTCTTGGGGGGTGATGGGAGGTCCTGAGTCATAGCTTCCACATACCATATGGGCAGGAAGGCGTAAGGTGCATCTTGGTGTACAGACACGGTGACTGGGCCGCCAGGCTCCCAAGAGAAGAGATGAACGAGCCTGGGGGGCAGATGGAGGCATCAGTTGAGGGCCAGAGGCTGGATCCTGGGATCCAGAGGGGAGGGACAGAGCTGAATGCCTCACCTGGGGTCATCCTGGACAACCGTGCTCTGGGCAAAGCTAAGGAAGGCGGCACAGAAGTTCATGCACACAGAGGGATTCCAGCCGTCACGGTCATTCTGGAGCAGGCAGAGGAGGAGGCAGAAGATGGGCAGTGGGGGTGGTGGGAGGA---GAGAAGGCAGGCTGTTGCCCTGGATGCTAGACCTGTGGTCTTGGTGTTTGGGGATACGGGTGGGAGCTGCAACATCGTTCCCTTACCCTGACATATTCAAACATCTTCATGGTAGGAAAGGTCTTGAGGGAAGAGACAAAACCGTCTGGGTTACGGAAGCCAGCAACAACATTCGGGACCCCTGGGAGGAATGACTGAGCCCACCATTTCAGGAGCTTGTGTCTGACAGGAAAAGCAAGGGATCAGTGGGACCCCTCGTGCACCCTCCA--TTCTGCCTTCACCCTCCTCCCCAAGTCCCTTTCCCAGCCTTCAAGCCTAAGCTCTCGCCCTGCCCACCCCGATCCTGAACCTGTAGAAACTCCTCCATTGGCCAGGGCTGTGCATCTCCTTGGAGGTCTTGAGCTCCACATAGCAGGTTGGGGGCTGTGTGGATGGGGCTTGGGGGTCTGTGCAGTCTACCTCCCCTGAGAAGAGCAGAGGGTGGCTTCCCAGGCGGCTGCGTAGCACAGAGCAGAAGGCCACGTTGGTGTTAACCTCCCCAGAGGGGTCTGGGGAGCTTCCAGGTTTGTCTGCACAAGGAGAGAAGCAGCAGCAGGCGTGGGGGGCTCTCAACCTCT-GGGAAGGGGAAGGGGGCTATGAAGCAGGGGCAA--CTCACCTGCACACATGTACTGCTCAAATTTGTATCCCATGTACATAAGCTCCCGGAGGAGCGGTGGCCGAGCAAGCCTCTGGGCCCGAGCGTTCGGTGTCTCCACTTCACTCAGGTATAGTGTTCCCTGGAACCGGGAGGCTGCCAGCTGCCAGCCCTCCTGCCGCTCATACGGTGTCGTCAGCAGTTTTGTCAGGTGCCCCCGCCACGTCACTATGGCCTCTGCCAGCCAGCCTGGACCCCTGAGAGGCAGGAGTTACAGGCTGAAGGTCTGACACAAGCATTAG-TGAGATGCTCCCCTCGAAGAA--TAGTCTTGTTTCTTCTAAGGACTGATTCTCACCCCGGCTTTGGCTCTCCTAATTTTAGAGGGTAGGTACGGGTCTCCAGATATAC-TGCCTACCACGCTTTGCTCACCCCTCCAACCGGCCTCGGTGTTCCAGGAGCCAGCACAGCAGGTGGTCCAGCCTTTCCTGGACCTCCTCGTCCCGGGGCTGGTATCGATCCGGGTATCCGTCTCTGAGGTCAAAGTTGGGGCCTGGACCGTTAGTGGGGGGTGGGCTATAGTAGCGCAGGGCTCGGGCATCTCCATGGTACTGGCGTTGAGCATCCAGGGAGAAGCAGCCCAG s canFam2.chr12 4424044 5016 + 75515492 CATTTTTTTCTTTTGCCTGGGAGAAACCAAGGTCAGAGTGAGCAAATCTGAGGTTTAGACTGAATCTTACCTCCTTTAGTCTTTTGTCACTGTGAAGACAGAGCTAGGTAGAGCCTTTGAGGGC--CTATCAAGTTTTGTTCCTTTATTTTGCAGAGGTGGTGAGGAAGCAATTTGTCTAGGGTTTCATGGTTGCAGGGCAGGGACTGGATCTGCTGGGACTAGAGCTGGTCCCCAGAGGGCTGGCTGGGGGCC------TCCCCCCCCCCCCTCCAGTCTCACTGACTTCTCTGACTTGAC-CCAGGGGAAGCCATCACAGTTGCAGTCCCAGTTCCGACTCACGTACACCATGATCCTGAACCTGCTGCGGGTGGACGCCCTCAGGGTGGAAGACATGATGAAGAGAAGCTTTTCCGAGTTTCCATCCCGCAAGGACAGCAAGGTGAGGAGATTGGGATGACCAGTATACTGGGCAGGCTGTTGGGACGAGGGAAGCCAGGCTGGGAAGGGGCAGGCACCTAGAGACTG--GGGGTGCAGGCAGGGAGGGTGGCACACTAGGCCTGGGGACTGTCCTTTCACACTTCCCCCCACTTCCACCC-AGGCCCATGAACAGGCTCTAGATGAACTGACCAAGAGACTAGGGGCCTTGGAGGAACCTGACACGACTGGCCAACTGGTTGACCTGTCTGAGTATTATGGCTGGGGGGAGGAACTGACAGAGACCCGGAGCTTGATCCAGGTGA------GTGGGTGTTGGAGGCATGAT----GGAGGGAGGAGAGAAT-GAGACACTCTGGGTGCTCCTGAACCTAGGCCCGGCCTAGTCCCTGTGATGTCCGTATGATGCCTCCTCC-----GCTCTCTACTCTTTAGCGACGCATCATGGAGTCTGTGAATGGGCTCAAGTCTCTCTCAGCGGGAAGGGTGGTGGTTGTGAAGAATCAGGAGTATCACAACACATTGGGTGTGATCCTGCAGGTGAGGGCAGTGGAAACTTGGACCCCAGAGGGAAGGAGGGAGAAAGGAGGGAGTGGGGGGAGACCCTATCTCCATCTTCCCCAGTTGGCTGTGGTGGTTATAGTCACAATGGTACACTCA-CATCCCCTGTTGCTCTCCTTT----CCTGTTGCT-------ACCACTTTGTGCCTACCTCCTTGTCC-----TTTCCTGAAGACTGTTCTGA----TGGGCTTGGTTACCAGTCCATCCTGGTGGGCTTTGCA--GTTGCTCTGTG-TCCCTGCCTGAGGGTGGGGACCTGCTCTCCATCTTTGATGTCTACTCCTCACATTGCCCTGGCCTGGCCTCCCC-ACCTGCCCTAGGTCTCCTCGAATTCTGCCAGCAGGGTATTTACAACCCTGGTCCTGTGTGATAAACCGGTGTCTGAGGACCCACAGGAGAGGGCGCCAGCCACCCCTGATGTGCCATACCCGGATGACCTTGTGGGATTCAAGCTGTTCCTGCCTGAAGGTGAGCATGGGGCAGATGTCCAAGTTCCTGACAGCAGTGTGGAAAGGATGCCTGGGTCCAGGGTCTTGTTTGACTCTGCTCTCCCCTTTGCACAGGGCCCTGTGACCACACAGTGGCCAAGCTCCAGCCCGGAGATGTAGCCACTATCACCACCAAGGTGCTCCGAGTGAATGGGGAGAAGATCTTGGAGGACTTCAGCAAGAGGCAGCAACCAAAATTCAAGTCAGAGATTCTGGAGAGATCTTTTTTT------------------------------------------------------CTTGGGAGGGACTATG------------------------------------TAACAGGGTATGGGGAGGTGTGGTTG--------GGGCGTC-----------AGGGGCTTCTGTGGAAGAAAAGACTCTGCCCTAGGTCTCAAGACTTTGCTCCTTCCTCAGGAAGGATCCTCCCATTGCAGCCGTGACCACTGCTGTCCAGGAACTGCTGCGTCTGGCTCAGGCCTACCCAGCAGGACCCCCGACCCTTGACCCTGTCAATGACCTGCAGCTCAAGGATGTGTCTGTGGTAGAGGGGGGGCTCCGGGCCCGGAAGCTGGAGGAGCTGATCTGGGGGGCTCAGTGTGTGCACAGCCCCCGTTTCTCTGCCCAGGTAGG-TCCTGAATGCCAGCTCCCAAGTTGAGAAGTGGGGGCTGTGGTTCCCTTCTGGTCCCCTGTAGACCGGCCAGCCCCATCTCTGCCCTTGTCCTCCATGCCACCTCACCTTGCGGCATGAGGAAGGCTTACGTGCTTCTGCTGGTGGCTGTCTGCAGTACGTGAAGCTGCGAGAGCGAATGCAGATACAGAAGGAGATGGAGCGCCTGCGCTTCCTGCTGTCAGATCAATCACTGCTGCTGCTCCCAGAATATCATCAGCGAGTAGAGGTGGGAGGGGTACTGGGGGCGGGAGGGGGGTTGGCTAGCGAGGGAGAAGATAGCAG-GCTCCCAACACCCACCGTCTTTCTT-CAGGTGCTCCGAACCCTGGGTTACGTAGATGAGGCGGGCACCGTGAAGCTGGCAGGGAGGGTGGCTTGCGCCATGAGCAGCCATGAGCTGCTCCTCACTGAGCTCATGTTTGACAATGCTCTGAGTGCCCTGCGGCCAGAGGAGATTGCAGCCCTACTCTCCGGCCTGGTCTGCCAGAGCCCTGGGGACCCTGGGGAGCAGCTCCCAAGTACCCTCAAACAGGTATGGGACACCCACCCCACTTCCTCTCCTTTGGCTGTGGCATTCCTGAGCCCCACCCCCACA-AGTTCTCCAAGTGACCCCCCTCTAGCCCTGTGAAGTGCCCCTAAGAGCTGGAATGCCT-TCTTCCTTATCTGGGCTACCCTGCTCCTGGAGAAGGAAGGCAGGGCCTGAGCCTCTTATTCTGACATCTGCAGGGAGTGGAACGTGTCCGGGCTGTGGCCAGGCGGATCGGTGAGGTCCAGGTGGCCTGTGGCCTGAACCAGACAGTGGAGGAATTTGTCGGGGAGCTGAATTTTGGGCTGGTTGAGGTTGTGTACGAGTGGGCCCGTGGCATGGTGAGTGAC-------TGGGGTTTTGTGGGTGGCTGGTTGGGGAGAGGCTGCCCAG-----GTCTATCTA--CCACATTCTTGCTTCCCCCACAGCCCTTTTCCGAGTTGGCGGGGCTGTCAGGGACCCCTGAGGGCCTGGTGGTCCGCTGCATCCAGCGCCTGGCTGAGATGTGTCGCTCGCTGAGGGGGGCAGCCCGCCTGGTAGGTGAGCCTGTGCTAGGTGCCAAGATGGAGACGGCAGCTACCCTGCTACGGAGGGACATCGTCTTTGCTGCCAGCCTGTACACTCAGTGAATGCTGTCTGTGTAAAAATGTAGTAATAAAATAGCAAACCCCTGCC-TGTCCTTAAGGTGTTGGGCAGGGATGACTCAGGCAAAAGACACAGCAAGAAAAAAAAGAAGACACAGCAAGAACCACCTAGAAATATGCTTTTATC-TGTGCACATGGAGACAGGACCAGC-CCCTTTGAAGTTTCAGTCCTTGGGGGAAGGTGTCTTGGGGGGTGATGGGAGGTCCTGGGTCATGGCTTCCACATACCACGTGGGCAGGAAGGCATAGGGTGCATCTTGATGTTTAGACACCGTGACTGGGCTGCCAGGCTCCCAGGAGAAGAGATGGACAAGCCTAAGGGGCACATGGGGTCACAGGTTGAGGGCTGGAGGAGAGCTCCGGAGACCCAGAAGGCAGGGGCAGAGATGAATGCCTCACCTGGGGTCATCCTGGACAACTGTGTTCTGGGCAAAGCTAAGGAAGGCAGCACAGAAGTTCATGCACACGGAGGGATTCCAGCCATCACGGTCATTCTGGAG--GGCCGAGGAGGAGGTGGAAGGCAGGTGGTGAGGGGGAAGACAGGAAAGGGGAAGGCGGACTGCTGCCCCGCATAGTGGACCTGTGGTCTGGGTG-CGGGGGACGCTGGTGGGAGCTGCAGCACCACTGCCTTACCCTGACATACTCGAACATTTCCATGGTAGGAAAGGTCTTGAGGGAACAGATGAAACCTTCTGGGTTACGGAAGCCAGCAACGACATTTGGGACCCCCAGAAGGAATGACTGAGCCCACCATTTTAGGAGCTTATGTCTGTCAGGAAAGGCAAGGGGTCAGTAGGGCCCTCCCCCCACTCCCCAGCTTCTCCCTCTTCCCCCCGCCCCCA-TCCCTTTTCCAGCTGTGTGCTCTAGGCTCTCCTCCTACCCACCCCCACCCTGAACCTGTAGAAGCTCCTCCAGTGGCCAGGCCTGTGCATCTCTTTCGCGGTCTTGAGCTCCACATAGCAGGTGGGGGGCTGTGTGGATGGGGCCTGGGGGTCTGTGCAGTCTACCTCCCCTGAGAAGAGCAGAGGGTGGTTTCCCAGGCGGCTTCGTAGCACAGAGCAGAAGGCCACATTGGTGTTAACATCCCCAGACGGGTCTGGGGAGCTTTCAGGTTTGTCTGCACAAG--GAGAAGCAGCAACAAG-GGAGGGGACTTTCAATCTCTGGGGAAGGGGGAGAGGGCTCCAGAGCAGACGCAACTCTCACCTGCACACATGTACTGCTCAAACTTGTACCCCATGTACATGAGCTCCCGGAGGAGGGGTGGCCGGGCGAGCCTCTGGGCCCGAGCTGCTGGTGTCTCTACCTCACTCAGATATAGTGTCCCCTGGAAGCGGGAAGCTGCCAGCTGCCAGCCTTCCTGCTGCTCATACGGTGTCGTCAGCAATTTTGTCAGGTGCCCCCGCCATGTCACTATGGCCCCTGCTAGCCAGCCTGGACCCCTGAGGG--AGGAGTG------------------AGAAGCATTAGCTCAGGTGATTTTCCCAAAGAGCCTAG----GTTCCTTCTAAAGACCGA-ACTCACTCCAGCTTTGGCTCTCCTAATTTTAGAGAGTGGGTGCAGGTCTCCAGATCTACATGTGTGCT-TGCTTTGCTCACCCCTCCAGCTGGCCTCGGTGATCCAGGAGCCAGCGAAGCAGGTGGTCCAGCCCTTCTCGGACCTCCTCATCCCTGGGCTGGTATCGATCAGGGTATCCATCTCTGAGGTCAAATTTGGGGCCTTGGCCATAGGTAGGGGGTGGGCTGTAGTAGCGCAAGGCGTGAGCATCCCCGTGGTACTGGCGTTGTGCATCCAGGGAGAAGCAGCCCAG a score=63563 s hg19.chr6_ssto_hap7 3272148 2333 + 4928567 CCCCTGGGATCCATGAGGTCCTAAGACAAGCAGGGG--TACAGAGTTTCCATTCTACAGAGGAGGCCTGGAGAAGGATGA--CTGGTTTAGGACTAAGCGAGCCACCTGATCGCCAGGCTCTGGCCTTGAAACATTCAGGCCCCTCAGACGCCACCGCGGCCAAGCTCTCATCCTGCCTCTTTCCTTGCCCTTCACCCACCCTCCCTCCAGGTCCTCCAAATGCAGTGAGG--TTAGGAAGGACGTCTGCGCTCAGATCAAGAATCCAGTTACCTCAAAGCTCCCCAACTTCCACCTCCGCAGAGCTATGACGTCATGGCAG-GCACGCCAGAGGCCGAAGG-ATGCAAAAGTGGTTTTC-TGCTTTCGATGATGCAATCATTCAGCGACAGTGGC--GGGCAAACCCCTCCCGGGGCGGGGGAGGTGTGAGCTTCACGAAGGAGGTTGACACCAACGTGGCCACCGGCGCCCCTCCACGCCGCCAACGAGTCCCCGGGCGTGCGTGCCCTTGGAGGGAGCCAATCCGCGGCCGGCGTGGGGCCCGGCCTGGCGGAGGTGATGCTGGTATGTGCGTCGCCACCGCCCCTCCCAGCACTGACGGGCCTGAGGGACGACAAGTTGACGCTCCT-------TTCGTCATCACCTGGTCTAGGAGGGACGCCCGGGGAGACCGTACGTCACTGCTCTGCGCCGGAAGACCCTATTTTCAGGTTCTCTTCCCTCCATTCCTACCCCTTCCCCGGTACCATAAAATCCCGGGATATGAGCTGGAAGAGGCATCACCTGATCCCGGAGACCTTTGGAGTTAAGAGGCGGCGGAAGCGAGGGCCTGTGGAGTCGGATCCTCTTCGGGGTGAGCCAGGTAACCATGGCAACCCCGGGGGTGGGGCCTCGCTTCCGGTAGCCGAGAGTTTTGTTAGAACCGCGTCCCCGCCCCAGTTCCCTGTCCGTG--AGCCGATTTATCTGCCCAGGGTCGGCGCGCGCGGCTGTCTCAGAACTCATGCAGCTGTTCCCGCGAGGCCTGTTTGAGGACGCGCTGCCGCCCATCGTGCTGAGGAGCCAGGTGTACAGCCTTGTGCCTGACAGGACCGTGGCCGACCGGCAGCTGGTGAGGGGCGTCGGTGCGACCGCCGGAAGCC--------CCTTTCCTAACTCCTGGAATTCCCTGTCACTCAGTCACTCCGCCAGCCGTTCAGCAAGCATTAGGCCTTTCAGGCGAGGGCACTGTGCCAGGCACTGGGGTGCCACAGAGACCCTGTTAAAAGTCCCGCAGGTAGTACAGGGCATTTCAAATCATGGAGGTAGAAGAACGAGGCTTTTGGGGAAACCGAGTCATGGGGCATGGTTCGAACA-TACAGCGCTGGGAGTGCAGTCAGACGTCAGATCATGACAGGCCTTGTACATCAGTGTTGTTTCCATCTTACAC-TGAGGCGATGGGCTGGTAGAGAATATCATAG----AGAGAGGGAATGGTGT---------ATTGGAGATAGTGGATGAGGCAGGGAGGTCAGCTAAGAAGATACTGCATCTGAGAAGTGGTGAAGGCCTAAATTAGGTCAGTGCAGTAGGGAGGGAGAggagagtgaggaaga--------gggaggagtccaggacaactcagactttccagatgactg----cgtggctggtggt------attaggagcacatttagttgttggactacagataatgtgtttaattttatacaagttgagttgatggtgcatgtggagcatccaaagacaaaggtat--tagacagttggatatgagag-ttggagagaattctgggccagtgataatagaattacaagtcatggaggtgtgaatagcaagtggttaattctgt-----gatgt-ggtgagatccagtaggaagagtgggtagaGGagtgatttctaacctttttgtaatctttagaaggtgataaaagctatggctatctctctccagaaaaatgcacgtttgccacatatacatagggtgtatgtata---------------gttaggggg-----gaaatattttactaatcctgcgaggtccgtggttaaggactccaggtttagaGTGGAAGTTAATAGGGTCAAATCCACAATGCTGGGAAACACCATCATTTAAGGCAGTGTTACTGAATATATGAGCTGAGTTATTATgcctgtgtcaaaattacgtgggctgcttgttaaaaaaaatacaggttcctgggactcatccaaggttaatgaattacgctctcttggggcgggatttgggactctacatttttga--ACTGCCTCAAGTGCTTTTTAAGTGTGCCTTAAAATTTGAGATCCACTGACATAAAGGGAAAGCAGAAGAAGAGGA-----ATCTGTGACAGAGGCAGAGAGGGACTTGCCTGAGTTAAGAGG s canFam2.chr12 4429226 2122 + 75515492 TCCATGAGGTCC-TGAG-----------AGCTGGGGCCTATTGAGTTATCCTTTTACGGAGGAGGCCCGGGAAAGGGGGACTCTGGGTCTGGACTAAGCGAGCCTCCCGACGGCCAGGCTCTGGCCCCGAG------------CACAAACAAGACAGC-------CGCGCAGCCCACCCCTCCTCTTGCCCTGCGCCC-----CGCTGCCGACGCCTCAAACGCGGTGGGGGCTGGGGAAGGCTGTCCGGGCGCAGATCACCGACCCGCAGGCCCCAAAGC-------CCGCCTCCTCCACGGAGCGGAGACGTCACGCCGGTGCGTCCAGGAGTCGGGAGGCGCGCAAAGGTGGTGTCCGCGCTCCGAGTCGCGC------TCAGCGACAGACGCGGGGGCGCGCTTCCCCCGGG--------AGCTCGCGctccgc--------ccgccgcccacgcgctcccggcccccgctccccg------------ctcccggcccccgcacccgcGCAGGAGGCCAGTC-----CCGGCG-------------GGTGGCAGCGCTGC-----------TCGGGGCCGCGC---------------------GGAGAGGGCCAGCGGAAGCTCTTGGGGCGCGTCATCCTTACCGCGCC--GGGCGGGCCTCCAGGGAG-CCTCGCGTCAATGCCCTGCGCCGGAAGAGCC--GTCTCCGCGCCCCCTCCCTCGGCGCCGGCCTCTTCCCCCGCCT----GAACCCCGGGATATGAGCCGCAAGAGGCAGGGTCTGGTCCCGGACCCCTTTGGGCTGAAGCGGCGGCGGGAGCGAGGGCAGGCCGAGGCGGATCCCCTGAGGGGCGAGTCGGGTAAGCGCGGTGGCCC-------GGGGCCAGGC----------------------TGGGAgcgcgccgccgccc----------gccgcggTGACCGGTCTCTCCGTCCAGGGTCGGCGCGCGCCGCGGTCGCCGAGCTGGTGCAGCTGTTCCCGCGAGGCCTGTTCGAGGACGCGCTGCCGCCCATCGCGCTGCGGAGCCAGGTGTACAGCCTGCTGCCCGACCGGACGGCGGCCGACCGGCAGCTGGTGAGCGGCGTCGGGGCGGCGGACGGAAGCCGCGCCCGGCCTCGCCGGAGGGCCACGGGCCCCTGAC-CCCAGTGGGTCCGC-------------------GGGTCTC-------------------------CCGGGGTGGC-CACGGACCTCGCGGAAAGACCCTCCGGCAGG--AGAGCAGGCCACATCGTGGAGGCGGAGGAGCGA--CTCCTGTGAAAACGGAGTCCTCGGGCGTAGTCGGAGCCTTCCATCGCGGGGAATGCCGGC------------------GGCCGCGTCC--CAGTGTGGTCGCCGTCCTACCCGTGAGGCGA-----CGCTGGAGGATACCGTTAGCCCGGAGAGGGGACGCCGTGCCGCGGGGGTCGGAGGAAGGGAGATAGGCAGGGAGATCGGTTAGGAAGACGTGGCGGCGGCCAACTGGCGAAGGCCTCAAGGAGGGTAGTGCAGTAGGAGGGCGAGGGTGGGTGACGGTGAGGAGCGTGGGGAGCAGTCC-GGGTGATTCAGGTTTTCCAGATGGCAGGACTCAGGGGGGGGAGTGAGTAGAGTAGGGACGCGCTGAGGCGCGGGG--GCAGGCGATACATTT----------TGGAGGACTTGGAGGTGCTTGGGAAGCGTCTGAAGGCAAGTGTGTAGTAGACAGTTGGATGTGAGGGACTGGAGAGAATTCTGAGCCAGTGATACTAGAGTTGT------------------------TCGGTTCATTCAGTCTGCGGAGGTAGGCGAGATCGGGTAGGAAGA----GTAGAAGAGTGGTTTTTAACCTTTTTACAGACTTTAAGAGAT----AAAGCTATGGCCCTTTCTCTCCAGAAAAATGCATATATGCCGCATACATAGAAGGTATATGTGCATTTTTCTTTTTTTTTTTTAGGGGGAGGGTGGGTTGTTTTACAGATCCTCTGAGGTCCAGGGTTAAGGACCTCAAGTTTAGAGTGAA-------AGGGCCAAATCTACAAAGCTAAGAGATACCCACATTTAAGGcagtgtttctcaaagtatgtcccgag---ttccacctgtatcagaattacctgggctgcttgtt--agaaaatacaggttcctgggactcacctaaagctaatagatgcagatctcttgaagtgggacctgggaatctacattctgaattactgtcccaagtgattcttaa-tgttccttaaaatttgggacccattgTTGTAAAGGGAAAGCAGAGGAAGAGGAGTCTCGTCTCTGGaagaggctgggaaggaattgtcagagttaggagg a score=5947 s hg19.chr6_ssto_hap7 3274788 117 + 4928567 AACCCAGGAAGAGGCCTACTGTGAAAGTAAAGAGATTTTTGAGAAAGTGAAGTAGTTGGCAGTATTAGAACCTGTGATTCAAGA-CAGTGGTCTAAGAAGAGGGAAGAGGTAAAGTAA s canFam2.chr12 4431348 105 + 75515492 aacccaggaagaggcctgttgagaaagcaaatagattttcaaggaggtggaatagttggcagtgttagaacctgtgatttaaggccagtaaattaa-------------gtaaggtaa a score=4868 s hg19.chr6_ssto_hap7 3275283 103 + 4928567 AAATCTGTCCATTGGATTTAGCAGGTAGAAGGTTAATAGTGATCTTTCAAG---AAAAGAGGAAAGAAAAGGAAG--GCAGTCTAG---CACTCACTTGAGGTGAGCTAGT s canFam2.chr12 4431459 110 + 75515492 aaatcagtccattggatttagcatgtggaagattaatggtaacctgtcaggaCAAAAAGAGGGAAGAAAAGGAAGTTGGAGACTAGCTCCACTCTCGGGAGG-AAGCAAGT a score=9954 s hg19.chr6_ssto_hap7 3275415 268 + 4928567 ATGCCAGATGGAACCACTCCTTAAGGAGTATTTGTTGATTTTAATGTATTGGTGTTAGCTTTTGTTTTTAAAAACCTTTAAAAGTTGCA-GAATGaaaatataaacatatataatttaaatgatgtttataaagcagatacctatctagccact---ccctaggtcaaactatagaatatgaccagtatcccacatatatccctctctgatcaaaaTGTCTCTGATCAGAATGTCCCTGGGAGGTGACTGC------------TGTGGTCATTGTTGCCTTAGt s canFam2.chr12 4431761 258 + 75515492 ATCCCCCATAGAACCACTCCTTACAGAGTATTTGTTGTTTGTAATTTACTGATGGTAGC-CTAATTTTTAAAAAGCTTTAAAAATTGCACAAAGGaaaatataaac--acacgatttaaagaatgttcataaagcagatacccataaagcaactaccacctaaggcagactatag---------------ccacatacatcactctctgatggaaatgagtt--------gtgtcccttggtgataactatggtcctgacccgtatgataattgttcccttggt a score=27374 s hg19.chr6_ssto_hap7 3279063 596 + 4928567 ACCTTACCCTACCCAGAATTTAGACTGTTAATGTTTTGAAGCCACAGCCTGCATCTTAATCACTATTTTATCTTAGTGCCTGG-----------TCTTA-GAAAT-TATATTGACTCTTTGATAGACCATATATAAGGCAGGTGGATGAGAATGTGGGTAGCTAGTTGGAAAAGGCTGCTTGGTCATTTGCTTGATTATTTTCTCACACAGTTTTTCCTTTACTAAGAGAAAA-TGCCCCCATATTGGCAAACAAAATCTCCCTGCCTGAGAGCACCCAGAGTATAGCAGAGCATCTTACCCTGATACGCCTCTTTTCACTCTCTTCTCTGTGGAGACAGAAGGAGCTTCAAGAGCAGGGGGAGATCAGAATCGTCCAGCTGGGCTTCGACTTGGATGCCCATGGAATTATCTTCACTGAGGACTACAGGACCAGAGTATGTG--ACTGTGTGCGTCAGGGGTGCTGGGGGGAGGGCACAGGTTGGGGGAGACAGGGAAGTTGGGAAACAGAAATAAAAACAAAAGAAAGAATTTCCCTGCCCCCACATCCCATGGAGAGGGCACAGGGCCCTGGTAAATAGTAATATGAGGGAGAGAGACaggagggaaag s canFam2.chr12 4432988 579 + 75515492 ACTTTCCCTCACCCAAAATCTCGACCACTAATTCCTTGAAGGCAGGGCCTATGTGTTAATCACTACTTTATCTTAGTGTCTGGCGTATTATTGGTTTTATGAAATATATGTTGA----TTGATAGGGAACTGATGAGATGGGTGGATAGAAAGGTGGGTAAGTAATTTGAAAAGACTACTTAGTAAACCACCTGATTCTTTCCCCACA--GTTTTTCCTTTGCTTAGAGAAAAACTCCCCAATATTGACAA-TAAAATCTCCCTGCCCAGAAGTTCCCAGAG-ATAGCAGAGTGGCTTACCCTGATGCCCTTCTTTTTATTGCCATCTCTCTGGAAACAGAAGGAGCTTCAAGAGCAGGGGGAGATCAGAATCGTCCAGCTAGGCTTTGACTTGGACGCCCATGGGATCATCTTCACTGAGGACTACAGGACCAGAGTGCGTGTAACTGTGTGTGT-----------GTGGGGGGGC-------GGGGCAGGCTGGGAAGTTGAAGAGTGGAAGGAAAAA-----GAAACATACTCTCTTACTCTGTGTCACA--GAGAGGACATGGGGCTCTGCTGAGCAGTAATATGAACGAGAGGGAAATGAGGGAAAG a score=181769 s hg19.chr6_ssto_hap7 3279781 4084 + 4928567 TATGAGAGGTGGAAGGATCTGAGCAAGAGGTAAGACAGGAAGAGAAATGCTGTCCTGGGGGTGGAGGTTGGTAGAGAGTGAGGGTGGGGATGGACCATGTCTCTCATCTCTGCTTGTAGGTCCTCAAGGCCTGTGATGGCCGACCGTATGCTGGGGCAGTGCAGAAATTTCTAGCTTCAGTACTTCCAGCCTGTGGGGACCTTAGTTTCCAGCAGGACCAAATGACACAGACCTTTGGCTTCAGGGACTCAGAAATCACGTGAGACTTGTGGAACCAACCAAAGTCAGGCATCTGGTGCTTCCCTGCCTCCCTCCAGTTCCATCCAGCCTGTCCTCCTGTTTTTTTGGTGAACCTGCCAGAAAAGCTGCCAAAAAGCTGACTCTTCTTTTTAATAAAATGACCCAAGTTTGTATTCCTCCCCACAAGAGAGGAGGCCTATCTT-ACCTG-GGCCTTAGAAAGAGCCCTGAAATAGAATTCAG---TTCTTGGTGGCTTATCAAAAGCACACAGGGGCCTGGCAGGAAGTGTAAAAGCTTGATGTTAATCATACTGGGACTAAGAGGATAGAGAATGGTAGGAGCT-GGGATACCCCTAAA-CATTCACATTAAAACAAAAAAAACCCAAAGCTAAAAAACAACTGGGCAGGAGCTAAATAAAAATCTAATTTTGAGAGGCTGTATCTGGCTCAGGCCTCCTACTTTGTAACCCATGGAATATGTGAAAGCATTTGAAAAACTATAGCACTGATCTCACATGGGCAGACACACTCTCAGAGAGATGTGGTGGGAGCCATGGCGCAGTCTGCCTAGG--CAGTGGCAGGAGCGCAGAAGA----CTCTGATTCCTCTCCTCGGTCCTAAGACCGAATGTGTGTCAGGACATGTGGTCAGGGAAGAG-----------AAGCTA-TTTAACTGAACCAGTAATAGTAGCAGGAAAAGAAAAAGTGGAGGGAGGGCAGTCCAGGTAGGGGGCCTGGAACAAGCAACTGCACCAACAGAGGCAGTTGGTGCGAGCACAGAACCACCCCAGGCTGGGATTTTGTTATCCAGTCTCTCTTGCATGGTTGCCCGTGTTTCTGGAGAC-TTGTGTAAACATTAATGGATGAGGAGGAGAGATGGTTCTCAGAGCCCAGCCCTCATCTCTGCTGGCTTCCCACTGCCCTCAGGCATCTGGTGAATGCTGGAGTCCTCACCGTCCGAGATGCTGGGAGCTGGTGGCTAGCTGTGCCTGGAGCTGGGAGATTCATCAAGTACTTTGTTAAAGGTATCCCATCTGCAGCTCAAGCCTGCAGCCCCT------CACCTTTTGGTGGCTCCTCAGGCCTCTAGGCCTTATTCACCTTTCCCCTTTCCTGTGCCACTTCTCCTCTAGGGCGCCAGGCTGTCCTTAGCATGGTCCGGAAGGCAAAGTACCGGGAACTGCTCCTATCAGAGCTCCTGGGCCGGCGGGCGCCTGTCGTGGTGCGGCTTGGCCTCACCTACCATGTGCACGACCTCATTGGGGCCCAGCTAGTGGACTGGTGAGTCTTTCCCT-GGCCTCTGGCAGATTATGGAGCAATGACCCAAAGTGGGATTTCCTCCCAGCTCATGCTTAGTTTCCTAGTGAAGGCCAGTGGCTCTCATTCTTCTCTGGAACCCGGGAGCACCCCTTCCCAAGTTCTAAGTTCTCCTCACAGCTTGAGCCTAGGCGTCTGGCTCCAGCCTTGTCTTTCT-----CCTGCACAGCATCTCTACCACTTCAGGAACCCTCCTCCGCCTGCCAGAGACATGAAGATTCTGCTCATCATTGCTCAGCTCCTCAGAGTGGGCCGGGAGGGGACTAGAAGAGCTGCATGATGGTGGCTGAGACAGGGTCACCTTGGGAAGGCTTGGGAGCCAGGATGAGTGTCGGGCTCTCGTGTGTGCAAAAGGTCAGATGTGACTGCTGCTGTTTGCCTGGTTTCTGACCCAGTGGTGGGGTTTGAGCAATGCTTCTCTGCCCTTCCATGGAAAGTGGAACCAGAAATGGTGCCAAGGCTGTGGCTGTTCCCTTTCGTGTAAAATGGTGCTGTTATTACTCTGTCTTGAAATAGGAAGGTGGGATTTCTGGGGAGGCTGGTGAAGGAGGGCAGGGTTCTTTTCTCTACGTGTCATGTTAAAATTGCCAAATAAAGTACCTCTGCCTGTGATATTTTCTGGATGTCCTTTATTTACTGTGACGTGTGTTTGGGTGCCTTGTTTAGGGGTAGAGGTGAAGTC-----------TGAGCTTTGCCTCATTC-----AGAGAGGAAAGGGGTCAGGGGTTCACTCTGACGTTCAGGCCATTCTCCCTGTGGAGTGGTGAGGGTGTACCTAATCTCCTAAACCACGGAATTTCTGTTAGGGCCTAAA-AAAGCAAAAGCCTAGTATAGTTCAATTTGTGTTGGAATGAAAGTAAGAGACAAGTGTCTTAGAAGCCTGTCATTGTTTTGTGAGGGCCTTTAA--------------ATATCC-----TGTACTCGTGGGCCATGTTGGGCCCTTGTACGCCCAGGTATACATGAGCTTGTGTGCACCTATACCCTGATACAGATATACCTGGTAGGGGGAGGTGCTCAGG-CACTGGAATGAGAGGAGTTAACGGGGAAGGACAGGGTTATTTCTGGGCCAAGATT--CAGAGTTTCCCATGGACACCCAGGTGTCCGGGGTGCCCCCAC------------------AACTCTGGGCCTGAGGCCAGTTGCACTTCTTGGCTGTCACGTGGTTTCCCAGCTTAGCTGGGCTGGGGGAGGAGCAAGGTCCAGAGTCAACTCTGCCCCGAGGCCTAGCTTGGCCAGAAGGTAGCAGACAGACAGACGGATCTAACCTCTCTTGGATCCTCCAGCCATGAGGCTGCTCTGGGGGCTGATCTGGGCATCCAGCTTCTTCACCTTATCTCTGCAGAAGCCCAGGTCCTGGAGGCGGGATGCTGGGTGCTTGGATTGGGGCAGGGCTGGCATCGGGACCCGATTCAGGAGTGAGGGA-------GAGCA----GGGGTGGAGGTGTCAGAGCGAAGTCTGACTGCTGATCCTGTCTGTTCTCCCCAGGTTGCTCTTGTTCTCTCCTTCTGTGGTTCATCTGGGGGTCCCCCTATCGGTGGGGGTGCAGCTCCAGGATGTGCCCCGAGGACAGGTAGTGAAAGGATCAGTGTTCCTGAGAAACCCATCTCGTAATAATGTCCCCTGCTCCCCAAAGGTGGACTTCACCCTTAGCTCAGAAAGAGACTTCGCACTCCTCAGTCTCCAGGTAACCAGACCCCATGCCCTCCTGCTGCTTGTGGGGGCCTCCTGCCCTGTTCCCATCTGTCTTGTAAGTGTCATCATCTTCCCACTGGCCTCCTCCCCTCCTGTCTTCCCACCCTGGCATTCTCCTTCCACGTTTCTCCCTTGGTCTCTGTCCTTTTTGGTCAGCTGTCTCTTGCTCTGTGAcccgctccctctccctctccctctccTGACAGGTGCCCTTGAAAGATGCGAAGAGCTGTGGCCTCCATCAACTCCTCAGAGGCCCTGAGGTCCAGCTGGTGGCCCATTCGCCATGGCTAAAGGACTCTCTGTCCAGAACGACAAACATCCAGGGTATCAACCTGCTCTTCTCCTCTCGCCGGGGGCACCTCTTTTTGCAGACGGACCAGCCCATTTACAACCCTGGCCAGCGGGGTGAGTCTCAGCCCCAGGGCCTCAACCTTTAACCCCCTCCGAGCCCTCTCAGGATGAGTTTGGTGCCCCCTAAGTGAGATAACCTGAAAGAAAGTGCCACACAGAAGGGGTGCTTAGGAAACATTTGTC-CCCTGCTCCCTCT-----------GTGGAGTTTGACCCACCCTCCCCTTGCACATGGACCCCTGCTCACCTCTCTCCTCCTCCACTCCCAGTTCGGTACCGGGTCTTTGCTCTGGATCAGAAGATGCGCCCGAGCACTGACACCATCACAGTCATGGTGGAGGTGAGTCCCCGACCTCTGGCCTTCCTGATCCTGGCCACTGATGTGACCTCCTGCCTGTGAGCACTT---CTCCCCTTGCAGAACTCTCACGGCCTCCGCGTGCGGAAGAAGGAGGTGTACATGCCCTCGTCCATCTTCCAGGATGACTTTGTGATCCCAGACATCTCAGAGTGAGCGCTCCC s canFam2.chr12 4433567 3906 + 75515492 TCTGAGAGGTAGAAGGACATGAGTGAAAGGGAAAACCAGAAGAGAAATG---TCCTGAAGG----GGTCAGTGGAGGGTGAGGGTGGGGCCAGACTGCATCTGTCATCTCTGGTTCCAGGTCCTCAGGGCCTGTGATGGCCGACCATATGCTGGGGCAGTGCAGAAGTTTCTGGCTTTGGTACTTCCAGCCTGTGGGGACCTTAGCTTCCAGCAGGACCAAATGACAGAGACCTTCGGCTTCAGGGACCCAGAGATCACGTGAGACTTGGGGGACCAATAGAA---------------CTTCCCTGTTTCCTCCCAGTCCCATCAAGCCTTTTCC----TTCTTCCAGTGCACCTACCA-----------AAAAGATAGACTCTTCTTTTTAGTAAAATGACCTAAATTTGTACTCTTTCAC-CAAGAGAGGAGGCCTGTCTTTACCTGAGGCCTTAGAAAGAATACTGGTCTAAAATCCAGGAGCTCTGGATGGCTAATCCAATG-AC-TAGTTGCCCACCAGGTACCATAAGTGCCTGTTGTGAACCCTGCTGAGACTAAGAGAATAGAGAGGGGTATGAGCTTGGGATGGTCCTAAAGCCTTCTCATTAAAAAGCAGAAA------------------------CTGGGGTGAAGTGAGGATTCCATTTCATGGGCCCTTATCTGGCTCAGGTTCCCTA-TGTGTACCCAAGGGTATATGTGAAAGCATTTTA-------------------------------TATATTTTTAGTGAGACATGGGAGGATCCATGGTGAGGCCTGGGGAAGGCAAGTGGCAGGAGCACAGAAGAAAGGCCCTTGTTTATCACCTGGGG--TTAGGCCAAGAGTATGTGAGGGCATGTGGTCAAGGAGGAGGAAGAGAGGAGAAGCAGCTTTAGTTGAACAGGTAATAGTAAGAGGAAAAGAAAGTGGGGGTGGGAGGCAGTCTAGGAAGAGGAATGGAAGCAAGGGCCTGGGGCGTTAAA--CAGCAAG-GTGAGCAGAGAACCACTCGGGG-TGGGCTACTGTTACCTAGTCCC-CTTGCATGGTTGTGCAGTTTTGGGGAGACAGTGTCCAAGTGTCAGT-------------------------------AGGCCTCCTCTC--CTGGCTTCTCGCCCTCCTTAGGCATCTGGTGAATGCTGGAGTCCTCACTGTCCGAGATGCTGGGAGTTGGTGGCTAGCTGTGCCTGGGGCTGGGAGATTCATCAAATATTTTGTTAAAGGTATTCTATCTGCAGCTCAAGTCCTCAGCCCTTTAAGGACACCTTTGGGTAGCTCCTTGGGGCCC-AAGCCTTAT--GCCTTTCCCCTCTCCTGTGCCACTTCTCC---AGGGCGCCAGGCTGTCCTCAGCATGGTCCGGAAGGCCAAGTACCGAGAGCTACTCCTATCAGAGCTTTTGGGCCGGCGGGCACCTGCCTCGGTGCGACTTGGCCTCACTTACCACGTGCACGACCTCATTGGGGCCCAGCTAGTGGACTGGTGAGTCTCGCCCTCAGCCTCTAGCAGATGATAAGGCAGTGAACCAAGGTTGGACTCCCTCCT--------------------------------------------------------GGGACTATCCCAGGCCAAGCTCTGAGTTTTACCCAGACTTTTGGCCTAGGTATCTGGCTCCAGCCTCGTCTTTTCTTTTGCTTGCACAGTGTCTCCACCACTTCTGGAACTCTCCTCCGCCTGCCGGAGACGTGAGGATTCTGCTCATCATTGCATATCTCTGCAGAGTGGGTTGAGAGGGGTCCAGGAGTA-TGTCCAGTGGTGGATGAGATAGGGTCACCTTGGGAAGACGTAGGAGCCCGGATGAGTGTTGGGCTTGCATCTGCATAAAGGGTCAGACGTGATTGCTGCTGTTTACCTGGGCTCTGACCCAGTGGTGGGGTTTGGGCAATGCTTCTCTGCCCTTCTGTGGGAC-TGGAGCCACAAACCGTGCCAAGGCCATGGCTCTTGCCTTTCACACAGCAAAGTACTGCTGTCGCTCT----TGGGATAGGAAGACGGGATTTCCGGGAAGGCTGGTGAGGGAGGGCAGAGTTCTTTCTT--AAATGTTAAGATCAAGCTGCCAAATAAAGTACAAAC-CATGTGCAATTTCTTGGATGTCTTTTGTTGGATGTAATATGTATCTGGACACCTGGTTTGGGGGCAGAGTTAAAGCCAACCTTGAGCCTGAGCTTTGCCTCATTGTTCCGAGAGAGAAAAGGACACTGGGGT-----------------CCATTCTCCCTGCAGGGTAGTAAGGGTATGCCCTGTGTCCTCAGCCATGGAATTTGTGTTGGGGCCTACACAGAGCGAAGGCCTGGTGTCGTTCAGGTTTTGTGGGGGTTGTAGTTAGAGACAAGTGTCTGGTA-------TTTTGTTTTGTTAGGATTTTTACCAAGGAAGCCATGTATCTCCAACCATGTACT---GAGCCACACTGGACTCCT--ACGCCCA----TGCGTGCGTATGTGTATACCTGTACACC----CAGGTACACCCAATATAGCG-GCTGCCCAGGGCACTGGGATGAGAGG-GTTAACGTGGAAGGACAGGACT----CGGAGCCATGATTTCCTCAGATGCCTTCAGAGACCCAGGTGTCGGGGGTTGTCCCTCCTCCCCCTGACCCTGCTAAACACCGGGCTTGGGGCCAGTTGCATTTCTTGCCTGTCACATGGTTTCCCAGCTTAGCGGGGCCAGGGGAGGAGCAAGGTCCAGAGTCAAATCTGCTCAGAGCCCGGGCTTGACCAGAGAGGAGCAGGCAGACAGACTGGTCTGATCCCTCTTGGGTCCTCCAGCCATGAGGCTCCTCTGGGGACTGGCCTGGATGGCCAGTTTCTTTGCCCTATCCCTGCAGAAGCCCAGGTCGGGAAGGAAGGACACCAG-TGCTTG-AGGAGGACAGGGCTGGTGGCGGGA----GAGCAGGCGTAGGGGACCTAACTGAGGACGGGGGGACAGAGGGGCCTGGGGGATG-CTGAACACCAAACCTTCCTGCTCTCCCTAGGTTGCTCCTGTTTTCGCCTTCTGTGGTTCACCTGGGGGTCCCCCTGTCAGTGGGGGTGCAGCTCCAGGATGTTCCCCGGGGACAGGTGGTGGCAGGATCAGTGTTTCTGAGAAACCCATCCAACCTGAATGCCCTCTGCTCCACAAAGGCTGACTTTACCCTCAGCTCAGAAAAAGACTTCGTGCTCCTTAGCCTCCAGGTAACTAGCCTCCACTCCCCTCTATGGCTTCTTAGCAACTCTCATCCTGCTCCCCTCTG----GTCAGCGTT-TTGTGCTCTCGCTAGGCTCCCCCTGCCACACCTTGCATGGCTG-------CCTTTCCTGTTTCTGTCTCCATCTCTGACTTTTTCCTTCTGCCCTGTCTC------TGACCTGCTCCCTCTCCCTATCAC------GAAAGATCTCCCCAGAAGAAGCAGAGAACTGTGGCCTCTACCGCCTCCTCAGTGGCCCCGAGGTCCAGCTGGTGGCCCAGTCAGCATGGCTGAAGAACTTTCTGTCCAGAAAGATAGATGTTCAGGGCGTCAACCTTCTTTTCTCCTCTCGCCGAGGGCACCTCTTTCTGCAGACTGACCAGCCTGTTTATAACCCTGGCCAGCGGGGTGAG--TCAAGCCCTGGGCCTCTGCCTCTGG--CTCTCCCAGCCTGCCCAGGGCATGTTTGGCA-CCTGTAAGTAAG--AGCCT----GAATGTGCTACACAGGAAGGCTGCTTGGCAAATATTTGTTGTCCTCCTCTCACTGGCTGGGAGCAGTGAGGGCTGA--GGCCCACCCTTTGCCAATGGATTCCTGCTCACCTCCTGC--CCTTCTCTCCCAGTTCGATATCGGATCTTCGCTCTGGATCAAAAGATGCGCCCATCCACTGACACCCTGACGGTCACAGTAGAGGTGAGTTCCTGACTTCTGACCTTGACCAGGAGGGCTGCTGATCTGCCCTCCCACCCGTGACCACTTCTACTCCCACCGCAGAACTCCCATGGCCTCCGTGTGCGAAAGAGGGAAGTGCGCGGTTTC---TCCATCTTCCAGGATGACTTCATGATTCCCGATATCTCAGAGTGAGTGCATCC a score=46712 s hg19.chr6_ssto_hap7 3284071 1106 + 4928567 GCCAGGGACCTGGAAGATCTCAGCCCGATTCTCAGATGGCCTGGAATCC---------AACAGCAGCACCCAG-TTTGAGGTGAAGAAATATGGTGAGAGCTGGAAACTGGAGGGACAGGCAGCTGCTTTCCTGAAGGAAATAAGGGTGGAAGGAGAGGTACTGGGAGCAGCTCAGGGCAGGGAGATATGGGTGCCACAGCCCTGAGCAGAGGGGAGTCTTTGAG-----------CTGGAGTCTGACCTGCCTATCCCTTCACCCTGGGTCAGTCCTTCCCAACTTTGAGGTGAAGATCACCCCTGGAAAGCCCTACATCCTGACGGTGCCAGGCCATCTTGATGAAATGCAGTTAGACATCCAGGCCAGGTAATACCTCCCTCCCCACCTCTGCCCACCAGCACCGGGTCCTGCTCCCTACTCAGTATGAATGGGCT-------CCTGCTTCCC--TGCCCTCGGGCCATTATTCCCCCCAGCC--------------------CTTGGCCCACCCTCTTC------TCTCTGCCACGACAGGTACATCTATGGGAAGCCAGTGCAGGGGGTGGCATATGTGCGCTTTGGGCTCCTAGATGAGGATGGTAAGAAGACTTTCTTTCGGGGGCTGGAGAGTCAGACCAAGGTAGGAAGGAGAATAGGGGCTG---------------GGGAGGGGAAG---GGGCAAGGGAGGTG-----------------------------------------------AGGTGGGAGACTCAGTCTCACCCTATGTCCTGTTTCTTTCTATGCCCCAGCTGGTGAATGGACAGAGCCACATTTCCCTCTCAAAGGCAGAGTTCCAGGACGCCCTGGAGAAGCTGAATATGGGCATTACTGACCTCCAGGGGCTGCGCCTCTACGTTGCTGCAGCCATCATTGAGTATCCAGGTGGGTGACTTTCCCTTATTGTAACCCCAGACCCTTGCCTCTGACCTCTGAGCTAACCCTCTGTCCTCCAGCACCAACACCACCCCA----CTTCTCACATCT--------CATCTCAGACTCAAAACCAGGAAACACCCAGGAGACCTGGTTTCTCTCCAACTCTGTCTCTGTGA---CTCGG---------CCCTTTTCCCTGGCTGAGTTTATTTATTTCTTTGCTCGTTCTGCTCATTCCT-----TCACTCCTCCAGTGGACATGTGTTGTTCAAT-----------GCCCCGTGCTAGGCCTCAGCATGCACAGAC s canFam2.chr12 4438087 1244 + 75515492 GCCAGGGGCCC------TTCCTGTCCTGCTGCCAGTTTGCTGAGGATCTGCGNACTCGAACAGCAGCACCCAGGTTTCCGTCGAGGAAATATGGTGAGAGCTGGAGACGCGAGAGA-AATTTTCTCCTTTCCTCAAGGAGAAACGGAGAGAAGGGGAGGT-CTGGGGACAGGGCAGGGCAGGGAGGTGTGGGTGCCATAGCCCTGAAGGGAGGGAAGTTTTCAGAGGGTCCTTTCACTGGAGTCTGACCTGCC-ACCCCTTCACCCTGAGTCAGTCCTTCCCAACTTCGAGGTGAAGATTGTTCCTGGAAAGCCCTACATCCTGGCAGTGCCTGGCTTTCTTGATGAGATCCAATTAGACGTCCAGGCCAGGTAACTCTCCCATCTCCTGCGTGGGGCAC----GCAGGGT-----TCCCCATCAAGTCTGAAGGAGCTGTGAAGCCCTGGTTCCTCTTGCCCTAGTGCCACCCCCACCCCCACCCTGAGACATGGGTGTTATTTCCTAAACTAACCCTCTTCCCACTCTCTCTGCGGCGGCAGGTACATCTATGGGAAGCCGGTGCAAGGGGTAGCATATGTGCGCTTTGGGCTCCTGAATGAGAATGGTGATAAGACTTTCCTTCGGGGGCTGGAGAGTCAGACTAAGGTAGGAAGGAGGGTGTGGGGAGTGTGGGAGGGTggaggggaggggaggagagggaaagggaagggGGTCTGGGGGGGTGGGCAGGAGGGTCCTGCCCTCTGTGGGGAAGGGCAGGAGGGAGAC-AAATCTCACCCTAGGCCCTGTTTTCTTCTATGCCCCAGCTGGTGGATGGCCAGTGCCACATTTCCCTCTCAAAGGCTGAGGTTCGAGGTGCCCTGGAGAAGCTTAACGTTAATGCTGCTGACCTCCCTGGGCTGCACCTCTATGTTGCAGCTGCCATCATTGAGTCTCCAGGTGAGGGGCTT-CCCTTATTGTAACCCCTGCCCCCAACCCCTGACCTTCGAGCTGACCCTCTGTTCTCCAGCATCGACATGATTCCCTGCTCTTCTTACCCTTGTGTCTTGTGTCTTGTGCCCAAAGCCAGAAAAGACCCAGGAGACT--GTCTCTCCCCAACTGTGTTTCTGGGTGGTTTCAGGAGAAGGTACTCCTGCTTCCATCTCAGTTTTCTTTTTCCCTTCACCCCACCCCCCACCCCCAACCCCcgtccatctggcagacacgttacataccatctgtgtgctgggtcctgtg-tgggcctcagcaaacagagat a score=92351 s hg19.chr6_ssto_hap7 3291546 1887 + 4928567 GAATACGG--CAGCCTGTGCCCTGGG-AGCTCACTGTCTTGTGGGAGGGAACCACTCAAGCCAC-TCCCCACTTGTCCTCCTGTCCCTCTCTTCTTGGGCTCT--GTCCCCCACCTCTCTCTGTCCTTTGTCTTGCAGGTGGGGAGATGGAGGAGGCAGAGCTCACATCCTGGTATTTTGTGTCATCTCCCTTCTCCTTGGATCTTAGCAAGACCAAGCGACACCTTGTGCCTGGGGCCCCCTTCCTGCTGCAGGTTTCTTCCAGAGGGGAAGGATGAGTAGGGAGGATGTGGTAGTTAGGAGGGCTCAGGGTCTGAC----CACTCTCTTTTGCCTG-CCCTCCTTTACCTGCCTAGGCCTTGGTCCGTGAGATGTCAGGCTCCCCAGCTTCTGGCATTCCTGTCAAAGTTTCTGCCACGGTGTCTTCTCCTGGGTCTGTTCCTGAAGTCCAGGACATTCAGCAAAACACAGACGGGAGCGGCCAAGTCAGCATTCCAATAATTATCCCTCAGACCATCTCAGAGCTGCAGCTCTCAGTAGGACTCCTCGGACCCCTGGGAGATGGTGGGGGAAGGGGAGGAGGGTGAGCTGGGGTC-------CCAAGG-------------ATCCATGGCCTGA-CTTGGGGGGAAGGTGGGGTACTTGGCTCTGAGCTACT-ACCCTATTCGCACC-TGACCCCCTCTCCAGGTATCTGCAGGCTCCCCACATCCAGCGATAGCCAGGCTCACTGTGGCAGCCCCACCTTCAGGAGGCCCCGGGTTTCTGTCTATTGAGCGGCCGGATTCTCGACCTCCTCGTGTTGGGGACACTCTGAACCTGAACTTGCGAGCCGTGGG---CAGTGGGGCCACCTTTTCTCATTACTACTACATGGTGTGCATGAGCTGGGGAGTCACGGAGGGCTGGGGTGCAGGGA-------------AGAGCC-CTCTGGGTGGGGCTGGGGGGGTTCAAGG-CTGAGGCTGTCCC----ATGAAGAGGCAACCACTCTTGTCCCTCCCATTCTTGGCCCAGATCCTATCCCGAGGGCAGATCGTGTTCATGAATCGAGAGCCCAAGAGGACCCTGACCTCGGTCTCGGTGTTTGTGGACCATCACCTGGCACCCTCCTTCTACTTTGTGGCCTTCTACTACCATGGAGACCACCCAGTGGCCAACTCCCTGCGAGTGGATGTCCAGGCTGGGGCCTGCGAGGGCAAGGTGACCGGGGTCAGGAGAGATGGCACTTGTGCCGAGGGGGTTGAGGAC------AGGGTGATTGCCAACAGGGCATGGATTTAGCTTGGGGGCAGTGAGGATAC-CGGGACTGAAGGAAGCTCTCCC-ACTCTGACCGCCCCCACCTGCCGCCCCTGCCAGCTGGAGCTCAGCGTGGACGGTGCCAAGCAGTACCGGAACGGGGAGTCCGTGAAGCTCCACTTAGAAACCGACTCCCTAGCCCTGGTGGCGCTGGGAGCCTTGGACACAGCTCTGTATGCTGCAGGCAGCAAGTCCCACAAGCCCCTCAACATGGGCAAGGTTTGTCCAGACCC----TCTCCACAGCTCTCTCACCCCTCCATGGCTCATCCCCCTGCTTCCCTGAGCCTTGGGCGCAGCCCCTGGATCCCACTGAGGCTCCCCACAGTCTCTTCCCCA---CTTGGC-CCTGTGGTCTCCATCTCCTGG--CTCTGTAT-CCTTTCCTATCCCCCCATGTGCTGCCCTCTCACCTGT-GCCGAGTGCTCAGTCCTGCCCCTCAGCCACACTTGGCTCCTAGCATTCCTGCCTTT-CTTGC-AGGTCTTTGAAGCTATGAACAGCTATGACCTCGGCTGTGGTCCTGGGGGTGGGGACAGTGCCCTTCAGGTGTTCCAGGCAGCGGGCCTGGCCTTTTCTGATGGAGACCAGTGGACCTTATCCAGAAAGAGTGAGAACAgagaaggaaggggag s canFam2.chr12 4439331 1906 + 75515492 gaatacaggacggcccatgccctgagcagctcgctgtcttgtgagcaagaaacgcttgAGCTGCATTCCCCCTCACTCTCCTGCTCATC-CTTCTGGGGCTCTCTGTCCTCCACCTCTCTCTGCCCCATCTCTTGCAGGAGGAGAGATGGAGGAAGCAGAGCTCACATCTTGGCGTTTTGTGTCATCTCCCTTCTCCTTGGATCTTAGCAACACCAAGCGACACTTTGTGCCTGGGGCCCCCTTTCTGCTGCAGGTTTCTTCTGGAGGAGA-GGATGGGAGGGTGGGGTGTTGT---CAAAAGGGCACATGGCCTCACTGAGCAGTCTCTTTTATCTGGCCCTCCTCCCTGCCCCCAGGCCCTGGTCCGAGACGTATCTGGTTCCCCAGCCTCTGGTATTCCTGTCAAAGTTTCAGCCACGTTGTCTTCTGCTAGATCTGCTCCTAGAATCCAGGAGCTTGAACAAAACACAGATGGGAGCGGCCAAGTCACCATTCCCATCATTGTCTCTCAGTCCACTTCAGAAGTGCAGCTCTTGGTAGGATATCC---GCTTGCGGGACAGGATTGGAGAAGGAAAGAAAGGCTGGCTGGCTTCTGGAAAGCCAGGGGCTACCCTGGCTAACCCCTGTCTTGGGCTTGGGGAAGAAGCTGGGTCCTGGGGTCTTTGCCACTGACCCTAGCCCTGCCCTGTCCCTCTTTCCAGGTGTCTGCAGGCTCCCCTCACCCTGCTGTAGCCAGGCTCACTGTGAGAGCCCCGCCCTCAGGAAGTTCTAGGTTTCTGTCCATTGAGCGGCCAGATCCTCGACCCCCTCGTGTCGAGGACACTCTCAACCTGAACCTGCGAGCTGTGGGTGTCAGCGGGGACAGCTTCTCTCATTACTACTACATGGTGCGCCTTGACCGGTT-GTTGAGCAGGGC-AGGGTGCAGGGATTGTCTCAGGCGGGAAGCAGCCCTGGGCACGGAGGGAACGGTTTTGGGATTGGGGATGTGCATGCAGTAAAGAGGAAACCA---------------TCCTTGCCCCAGATCCTGTCCCGGGGCCGGATTGTGTCTATGAATCGGGAGCCCAGGAGGGACCTGACCTCAGTCTCCGTGTTTGTGGACCATCAGTTGGCACCCTCCTTCTACTTTGTGGCCTTCTACTATCATGGGGACATTCCAGTGGCCAACTCCCTGCGGGTAGACATCCAGGCAGGGGCCTGTGAGGGCAAGGTAACTGGCATCGGGAGGGGCGG----TGTGTT-AGGGGATCGAGAGAGAAAGAAGAGAGATTGCGAGC------------------GGGTACACTGAGGAGGCGTGGGGCTGAAAGAAGCTCTCCCCACTCTGACTGCC---ACCTCCTGCCTCTGCCAGCTGGAGCTGAATGTGGGCAGCAACAAGGACTATCATCCTGGGGAGACCGTAAAGCTCCACCTGCAAACAGATTCTCCAGCCCTGGTGGCACTAGGAGCCATGGACATGGCTCTGTATGCTGTGGGTGGGAAGTCCCACAAACCCCTCAACATGGACAAGGTTTGTCAAGACCTCAGTTTTCCCCGGCCC-ATCTCCCCTTTTTCGCTCATTGTCCTGCTGTCCTGAGCCCTGGACCCAACCCCGAGATCTCACGCAGGCTCCCCCGAGGC-CTCCCTCATATCTAGACTCCTGTGGTCTATATTTCCCCATTCTCCGTATGTCTTTCAGGATTGCCCAAACCCTGCCTTCTCACCTGGAGCTGAGTGGCCGATCTGGCCCCTCA-----ACTTGTCTGC-AACATGCCGGCCTTTTCTTGCCAGGTCTTCCAAGTTATGAACAGCTATGACCTTGGCTGTGGTCCTGGAGGTGGAGACAATGCTCTTCAGGTGTTTGAGGCAGCTGGTCTGGCCTTTTCTGATGGAGACCTGTTGACCTCGGCCAGAAAGAGTGAGAACAGAGGAGGAAGGGGGG a score=30247 s hg19.chr6_ssto_hap7 3293433 637 + 4928567 tgggtggcgggaagataaggaaggaggaagggcctgaggggaccagctggaagagtccgggcaggaagggctgggcaggggaagggg---aggagggga----ggagGCCGAGTGCCTGACGGCTGGACTGCAGCCTTTCTCTCTACCAGGACTAAGCTGTCCCAAGGAG---AAGACAACCCGGAAAAAGAGAAACGTGAACTTCCAAAAGGCGATTAATGAGAAATGTGAGTTGCGGGTGCCTAGGCAGTAGCTTGGGCTCTCCACCTGGGATCCGGGTTGGGG------GTCTGCCTCTCTGCCCCTCGGCTCCTTGCTGAACCC-ACGTGTGGTATTTGGGGCCAGAGATCCGAATTCCGGGATTACGAGTGGAAGGTGGGCAGCTCTCTCCAGCAGCCTCTCTTATGTTGCTGGTCTCAAGGG----------------------GTCGGGGCGGGGGCTGAGGTGTATGTCCTTTTTGTCCTCTCATGCTCACCCCCACCTGGCCCTGCAGTGGGTCAGTATGCTTCCCCGACAGCCAAGCGCTGCTGCCAGGATGGGGTGACACGTCTGCCCATGATGCGTTCCTGCGAGCAGCGGGCAGCCCGCGTGCAGCAGCCGGACTGCCGGGAGCCCTTCCTGTCCTGCTGCCAATTTGCTGAGAGTCTGCGCA s canFam2.chr12 4437485 650 + 75515492 TGGGTGACGGGAAGATCAGGAAGGAGGAGGGATCTGGGGGCATAAGATGGGAG-----------GAGGGTCAGTGCATAGGAAGGGAGCAAGGAAGGGAAGTGGGAGGCTATGGACCCT-CTGCTTGACTGC-GTCCTGCTTTCCACCAGGTCTGAGCTGTCCCAAAGAAGGAAAGCTCTCCCGGAATAAGAGAAACGTGAACTTCCAAAAGGCGATTCATGAGAAGTGTGAGTTGTGGGTGCCTGTGTAG---------CTCTCCACTAGGCCCAAGGGTTGGGGTGACGGGTCTGCCTCTTGGCAGCTCCACTCCTGGGTGGGCCTTGTAAATGGTATTTGGGGCCAGAAACCCAAGTTCTGGGGTTGGGGATGGATGGAGG----CTCTCTCCACTGGCCTCACCCAAGTTTCTGGTCTCTCAGGATGAGCCGTCGTGTATCTAGACGTCAGGGTAGGAAATGAGATGTGTCTCCATTTGGTTCCCCTGTGCTTACCCTCGCCTCGCCCTGCAGTGGGCCAGTATGCTTCCCCAGTAGCCAGGCGCTGCTGCCAGGATGGGCTGACGAGGCTGCCCATGGTACGCTCCTGCGAGCAGCGGGTGGCTCGAGTGCGGCACCCAGCCTGCCAGGGGCCCTTCCTGTCCTGCTGCCAGTTTGCTGAGGATCTGCGNA a score=293222 s hg19.chr6_ssto_hap7 3294070 6405 + 4928567 AGAAGAGCAGGGACAAGGGCCAGGCGGGCCTCCAACGAGGTGAGGGGCTGGGTGGGGCTAGGGCACAGGT-GGCGGCGCT-TGGAAAGGCAGAACGGTCCCC-TCCTCACTCCCGTCCACCGTGGTCCCCCAGCCCTGGAGATCCTGCAGGAGGAGGACCTGATTGATGAGGATGACATTCCCGTGCGCAGCTTCTTCCCAGAGAACTGGCTCTGGAGAGTGGAAACAGTGGACCGCTTTCAAATGTGAGAGTGTGTGCCGG-CCCGGCCTTTTCTCTGTGCTGTGTCTCGGGGCCAGCC--GGGGTAGACGGGCCTTCTCTGCCTTTCCCTACACAGATTGACACTGTGGCTCCCCGACTCTCTGACCACGTGGGAGATCCATGGCCTGAGCCTGTCCAAAACCAAAGGTGATGTCACCCTGTCTGGGCCTCAGGTGACCCTGCTTCCATTTCCCTGTACCCCAGCTCCCTGTT---CCCTTTGCTCTTAGTGTAGGAAGAGGGTCCAGTGATCTGGGGAGGTCTGTGCCAGCGTGCAGCTGGCGTGGGCCAGAG----------GGCAGAGGCGGACTGAGA------CAGAGCTGGGTCACCCCCACCCCTCCCTCCTGTGGCCCTGAAGCTTTGATGGCCCCTCTGATCTCTGC---CCCTGTGCCCACGCTTCCTTTCCCTCAGGCCTATGTGTGGCCACCCCAGTCCAGCTCCGGGTGTTCCGCGAGTTCCACCTGCACCTCCGCCTGCCCATGTCTGTCCGCCGCTTTGAGCAGCTGGAGCTGCGGCCTGTCCTCTATAACTACCTGGATAAAAACCTGACTGTGAGGCCCCATAGGAGCCTGAGCATACAGGAGTTGGG--GGAGCCAGGGCCCAGTGAGGGGTGGGGAGGCTAACCGGGCCAGGACTCTGGCCATCCTCGTTTTCCTGCCCTCAGGTGAGCGTCCACGTGTCCCCAGTGGAGGGGCTGTGCCTGGCTGGGGGCGGAGGGCTGGCCCAGCAGGTGCTGGTGCCTGCGGGCTCTGCCCGGCCTGTTGCCTTCTCTGTGGTGCCCACGGCAGCCGCCGCTGTGTCTCTGAAGGTGGTGGCTCGAGGGTCCTTCGAATTCCCTGTGGGAGATGCGGTGTCCAAGGTTCTGCAGATTGAGGTGAATGGAGCACCCCTGAATATAAGTCCCCGGGCCCCCAG-------CTTTGTCCTC--------CACCCTCAGCACTCTCTCTGCTGGCCAGGCCAGGGGCCCAACACCCAAACCAATGCCTTGGTCTGTTCCCATCTTCTACAATTCTGATCCAACTCTGTCCCTGGAGTTGAAACTCAAAGTTCTGGGGGAGTCTGTGCTAGCAGGG-CAGGCTGTAGTCCTGTGTGACCTC--ACAACCATGTTTTCCCTGAGACAGAAGGAAGGGGCCATCCATAGAGAGGAGCTGGTCTATGAACTCAACCCCTTGGGTGAGTGACCCTCTACCTCCAGCCATTGGTTTCCTAAGTGGGTACAGGTGGTGGGGGATGTGGACAGCAGGACAGGCTGCCAACTTCCCCCATTTCCCCAGACCACCGAGGCCGGACCTTGGAAATACCTGGCAACTCTGATCCCAATATGATCCCTGATGGGGACTTTAACAGCTACGTCAGGGTTACAGGTGGGAGTGCCCTTTAGTCCCTTCCCAGTGGCCACCTTCGGATTCATGTGGGACCTGTGGATCCCTGCTTGGTCCCACTCCCCGTGAGCCTCTGACACAGAGTCCTCAGACCTCC------ACCCTCTCCC-------TCCCATGTAGCCTCAGATCCATTGGACACTTTAGGCTCTGAGGGGGCCTTGTCACCAGGAGGCGTGGCCTCCCTCTTGAGGCTTCCTCGAGGCTGTGGGGAGCAAACCATGATCTACTTGGCTCCGACACTGGCTGCTTCCCGCTACCTGGACAAGACAGAGCAGTGGAGCACACTGCCTCCCGAGACCAAGGACCACGCCGTGGATCTGATCCAGAAAGGTTCTGGGTGCAAGGGCAAGCAGGAGGGGGGCCAGGAAAGGACAGTTACTGGAAGATGGACAGCCCAGGAGGCTACAGAGGGAAAGAAAGGGGGCCCCTGATGAGGATGGGGAGCATGGCCTTGGGCTCAAACAGCAGAAGGGTGAGTGTCACCTGAGCGGCCACCTCTCCTCTCCAAGGCTACATGCGGATCCAGCAGTTTCGGAAGGCGGATGGTTCCTATGCGGCTTGGTTGTCACGGGGCAGCAGCACCTGGTGAGCTTGGGAGAGTGGTTCCAGGGTTCTGAGGGGGTCAGGGCTGGGGCAGGGGTGGGA--CAGAGCT-GGTATGATGGGAGGGTGGATAACCAGGCACCTGGGGGCGTGGGCATA--------ATGAGAAGCAAGTCCTTATCCCCAACCCTCCTTTCCTGCCCTCCAGGCTCACAGCCTTTGTGTTGAAGGTCCTGAGTTTGGCCCAGGAGCAGGTAGGAGGCTCGCCTGAGAAACTGCAGGAGACATCTAACTGGCTTCTGTCCCAGCAGCAGGCTGACGGCTCGTTCCAGGACCTCTCTCCAGTGATACATAGGAGCATGCAGGTGCGGGCATGCTGGGGCTGGCCCGAGAAGCGCCTGTCGGAGGACTCTCTTTG---------------CCCCTTCCCC-CTCCTGTTTGACATCTTTTCT--CCCCTT--ACTAGGGGGGTTTGGTGGGCAATGATGAGACTGTGGCACTCACAGCCTTTGTGACCATCGCCCTTCATCATGGGCTGGCCGTCTTCCAGGATGAGGGTGCAGAGCCATTGAAGCAGAGAGTGGTAAGTTCAGTGGCGTTTCTGCCCTCTGCTGGCCCCCAGCTCTCTCCCT----------------TTTTCCTCAGGAACCCAGGGGTCCAGGCCCAAGACCCTCCTCCC-GTTTTCTTCCAGGAAGCCTCCATCTCAAAGGCAAGCTCATTTTTGGGGGAGAAAGCAAGTGCTGGGCTCCTGGGTGCCCACGCAGCTGCCATCACGGCCTATGCCCTGACACTGACCAAGGCCCCTGCGGACCTGCGGGGTGTTGCCCACAACAACCTCATGGCAATGGCCCAGGAGACTGGAGGTGAGGGGTGAGGCGCTCCTGGCAGTGAGCCTGAGGCCCAGGGGACCTTAGGATCCCTGAGTGTGCCCAGAGGGAGAGGCTGGATGAAGACTCAGAGGAGGAATGAAGTTATAAGCAGGGGTGGGTTGGGGGAGACTCAGGAGAGCCCAGCAGGGGGTGGCTAAGGGCCAGGGGACCAGGCTCTTCTCCCTGCCTTCCTGTTTACTCGT-GGTCTCCCTTCACTTTCAGATAACCTGTACTGGGGCTCAGTCACTGGTTCTCAGAGCAATGCCGTGTCGCCCACCCCAGCTCCTCGCAACCCATCCGACCCCATGCCCCAGGCCCCAGCCCTGTGGATTGAAACCACAGCCTACGCCCTGCTGCACCTCCTGCTTCACGAGGGCAAAGCAGAGATGGCAGACCAGGCTGCGGCCTGGCTCACCCGTCAGGGCAGCTTCCAAGGGGGATTCCGCAGTACCCAAGTAGGGGCCGTCCCCGGGCTCTGGCGGGGGTGGGTAGTCCTCAGACCAAGGGCTTGCTTGAGTCCTGGCTCAACCTCCCTAGGACACGGTGATTGCCCTGGATGCCCTGTCTGCCTACTGGATTGCCTCCCACACCACTGAGGAGAGGGGTCTCAATGTGACTCTCAGCTCCACAGGCCGGAATGGGTTCAAGTCCCACGCGCTGCAGCTGAACAACCGCCAGATTCGCGGCCTGGAGGAGGAGCTGCAGGTGAACCACTCCCTGGTGAACCACTCCCTCGCCTGGGTAGCCAGGACACCTGGGCCTC----GTGGCCAGGCCAGAAGCCGTCCCCACCCTCCCACCC--------GTGGAATCCCCGCAGCACTTCTTCCTGGGGTCTTCGGGGGAAGACTGacttcctggctgcgtgacctggag-------------ctctgagcttcagttttctcacttgtagagtaacatacacagagttcaccctacagggtcgttagaaggctgaagtgagataattcatgtgctggtataaactttgtggaaatgtgaggtgGGGAGAGGAGGTGGGGCTGTTTTGAGGAAGGAGATAAGTTATTGGAGCCGCAAAAACAGGTTTGCTTGTGCCCTTCTAACATCGCCTTCCCTTTTCTGTTGCTG-AAGTTTTCCTTGGGCAGCAAGATCAATGTGAAGGTGGGAGGAAACAGCAAAGGAACCCTGAAGGTGAGGGCCA------GGGAAGGGGTGGGGCCAGGCACTGGTGGAGGAGAGGGTGTGGAGTGAGAGGCCTGTGGGCAGAGGCACATGGTCCGGGGAAGGAGGCAGACACCTCAGGGTTGGTGTCCCGTGCTTCCGTCCTGGGTGTTTTTCCCCCTGCTTGCTTTCGCTTGCTCTCCCCATCTCTGGGTACCTGTTGTTTCCTTTACCCGCCTCAGTGCTGGTGGCTCCGAATCCCACTCCTCAGCCCAGGCCTCTTCCCTGAACCATGGGCCCCACTCGTCCCACTCCCACAGCACCTCAGACGAGGCATGTCCCAAAGCCCTTCTTCATTCTGTGT-CTCTTGTCTGGCTGGTGGGAGCCCCTCCCAGCCAGGAGCCCAGCCACTACTCTAGAGGCCGTGTTAGTGGCCCCTCTCCCAAGCCTGTCCTTATGTCCCTAGTGACTCCTCCTCTGCTCCCCTGCTGCCTGTGGCCCTTGGTGCTGCATcctagattctgtgctgagacggccttctccctacctggaacttctctctacctcctg-tctcccctgtctgatccactgtccacacggcagtgacactgaccttccaaaagccccagccagatcaGCCTTGGGGAAAAGTCACTCCCCGCTGCCCACGGCTCAGATGGCTGGGCCTCTGCCCACCCCTCCGGCCAGACAGCTCTCCTTGTCTACACAGATCCCCTTGCCTTTCCTGTCCTTCCCTGCTTCTTGGCCCACAGGACAAGCTCTTTCTTCTCCTTCAAGCCTTGGCCAGAAGCCTTTCCTGAGCTTTTCAGTCCAGCCTCTTCCCAGCACAGTCTGGAGTGTTGGCCTCTGGGGGCAGGCCCCTGCTTCTTTACCTCTCTGTCTCGCCTGACGCCTGTGGCGAATGTGGTGCCACTCGTGTGTGTGGACTGTGCAGTGACGGGGAGGAAAAGGGGCTGAAGGCCTCAAATCCTGTAGCCCAGGGAGATGCCCTTAGGTATGGCACCAGAGA-GGTCTGTGGCCTCACATGTCCCACGTCCTCTCCCTGCCCCTTGCTGAGCCAGGTCCTTCGTACCTACAATGTCCTGGACATGAAGAACACGACCTGCCAGGACCTACAGATAGAAGTGACAGTCAAAGGCCACGTCGAGTACACGAGTGAGTGTGGGGGTTGGGAGGCCTTGGGGCCAGGCAGGGGCTGGCGCAGGGAGCCGGGTGGCCATCCCAGCCCTCCTCACAATGCTTCCCTGTGCAGTGGAAGCAAACGAGGACTATGAGGACTATGAGTACGATGAGCTTCCAGCCAAGGATGACCCAGATGCCCCTCTGCAGCCCGTGACACCCCTGCAGCTGTTTGAGGGTCGGAGGAACCGCCGCAGGAGGGAGGCGCCCAAGGTGGTGGAGGAGCAGGAGTCCAGGGTGCACTACACCGTGTGCATCTGGTGGGCGCCGGGAGCTGCCCTGG-----------------GCCAGGGGAGGGAGGGCAGGACCCAG---------GCTGGGGCTGGGCTTCTGGAGCCCGCGCAGGCAGAACCTGGACGACAGCTCACACGTCTCCACAGGCGGAACGGCAAGGTGGGGCTGTCTGGCATGGCCATCGCGGACGTCACCCTCCTGAGTGGATTCCACGCCCTGCGTGCTGACCTGGAGAAGGTGTGGTCAGCCACCCAGGGC----------------------------------AACCCCCTCTGTCCCAGGT-------ACTGAGCCCTGTCATGTGCAGGGC--------------CTGTGACCAACTCCCCTTTTCCACAGCTGACCTCCCTCTCTGACCGTTACGTGAGTCACTTTGAGACCGAGGGGCCCCACGTCCTGCTGTATTTTGACTCGGTGAGTGGGGAGAGATGAGGCAGGAAGGGACTCGATGGCACCGGGTTTACTGAGTATGCGTTAGGAGGTTTCTCAGGAGACAGCTGTGTCAGCGGCTGGTGCTCTTG---AGAACTTGTGATGTCATCAGAGAGA-AGGACAAGAATGTGAGCCCGTGAGACACAG--CAGAGTAAGGGGCAGACCTG----------------CAGGCGGCAGGGACCGATGCCAGTCAGCAGGGACCCTCAGGGTTTGAG--agggagtctttcctaatgctggttttattcagcttgaggggctgcctttgttttt--ttgttgaacttcct-----------atcttttttttaatattaaagcgtattttcctttacaaagtgatggtggccatagatgatagttgtatttgtcttttcacgaccttatttggctaaa----atagttatcaaccctcttacggctctcaaaA s canFam2.chr12 4441888 6286 + 75515492 AGAAGTCCCGCTCCAGAGGCCAGGTGGGCCTTGCCCGAGGTGAGGCCCTGGGTGGTGCTGGGGGGCAGGCAGGCAGCCCTCTGGAAGGGCAGAATGGCCCCCCTCCTCATTGCCCTCCACTATGGTCTCCTAGCTCTGGAGGTCCTGCAGGAGGAGGACCTGATCGATGAAGATGACATTCCCGTGCGCAGCTTCTTCCCAGAGAACTGGCTCTGGACACTGGAAAAAGTGGACCGCATCCGCCAGTGAGGGGGTGTGGTGGGCTTGGCCTTATCTCTGGGCTCTTGTCTGGGGCTAGCCCAGGGTGTGACAGGGCTTCTC-GCCTTTCCCTCCGCAGATTGTCACCGATGCTCCCTGACTCTCTGACCACGTGGGAGATCCATGGTGTGAGCTTGTCTGAAAGCACAGGTGACATGGCCCTGCCTAGACCTCGGTGCTCCCCCGTCTCTCTCCCCTGGACCCAAGCTCCCCATGTAGCCCTCTGCTCTTAGCATGGGGCTGGGGGCAAACT-CCTGGGGACGTCTGTGTCGGTGTGT-GCTGG---GGCCCAGAGACTAGGAAGTGGCAGTGGGGGACGGGGAGTAGGGCAGAACTGGGTCACCTC-------------TGGGACCCTGTGGC-----------CTCTGGTCTCTGCGCCCCCTGCCTCACCGCCCCCCATCTGCCAGGCCTGTGTGTGGCTACACCAGTCCAGATCCAAGTGTTCCGTGAGTTTCACTTGCACCTCCGCCTGCCCGTCTCCATCCGCCGCTTTGAGCAGCTTGAGCTGCGGCCTGTCCTCTACAACTACCTGAAAGACAATCTGACCGTGAGGCCCTGGAGAAGCCTGAGCTTCCAGGGAGTGGGTGGGAGCTAGCGTG-GGTGAAGTGTGGGGAGCCCAGCTGGGTGGGGGCTCTGGCCATCCCCGTCTTCCTGCACCCAGGTGAGCGTCCACGTGTCCCCAGTGGAGGGGCTGTGCCTGGCTGGAGGCGGAGGGCTGGCCCAGAGTGTCCTGGTGCCCGCAGGCTCTGCCCGGCCTGTCAGCTTCTCTGTGGTGCCCACGGCGGCGACAGCTGTATCCCTGAAGGTGGTGGCTCGAGGGTCCTGGGATTTCCCCGTGGGGGATGCAGTGTCTAAGGTTCTACAAATTCAGGTGAATGGAGCAGTCCTGAGTCCAGGTCCCTAAGCTCCCAGATATACATTTTCTCCTCGCCCCTCAAACCCTCTATACCCTCTCTGCCGGCCAGGCCAGAGGCCCC---------TGAATACCTTGGTCTGATT--GTCTTCTACAATTCTAATCCCACTCTGTCCCTGAGATTCAGACTCCCAAGTCCCAGGGGGTGTGCAGTGGGAGGGGCAGGTCATAGTGCTGTGTGACCTCTCATAGCTGCATTTCCCCTGAGACAGAAAGAAGGGGCCATCCACACGGAGGAGATTGTCTATGAACTCAATCCCCTGGGTGAGTGGCCCCCTGCCTCTGGCCACCAGTGTCCTAATTGGG-------------AGATGTGGGCCGCCAAACAGGTTGCCAACTTCCCCCATTCCCCCAGACCACCGAGCCCGGACCTTGGAGATTCCCGGCAGCTCTGACCCCAATATCATCCCAGATGGAGATTTCAGCAGCCTTGTCAGGGTTACAGGTGGGAGTGCCCTCCAGTCTGTCCCCAGGG--CAGCCTCAGATTCATGTGAAGCCCACAGACCCCTGTTAGATCCC---------------------CTGGGTCCCCAGACCTGCTCGCTGACCCTTGCCCCTCCATTTCCCCTCTAGCCTCACATCCCTTGGACACTTGGGGCTCTAAGGGGGTCTTGTCGCCGGGAGGCCTGGCCTCCCTCCTGAGGCTTCCCCAGGGCTGTGGAGAACAAACCATGATCTACTTGGCTCCTACATTGGCTGCTTCCCGCTACCTGGACAAGACGGAGCAGTGGAGCACACTGCCTCCCGAGACAAAGGACCATGCTGTGGATCTGATCCAGAAAGGTGCCAGGCACA-GGGCGAGTAGGCATGGGGCTGGGAGGCGACAGAGGCAGG-----GGGTGGCCCAGCTTGCTG--GAGGGAACAGGAGGGGGCGCCTGTAGGGATTGGGGAGCGTGGCCCCGGGCACCTGTGGTGGG-GAGTGAGTGTCACCTCAGCAGCTGCCTCTTGTCCTCAAGGTTACATGCGGATCCAGCAGTTTCGTAAAACGAATGGTTCCTACGGGGCTTGGTTACATCGAGATAGCAGTACCTGGTGAGGTTGGGAG--TGTTTCCAGGTCTCTGAGAGGG-----GCTGGGGGTAGGGTGGGGTGCAGAGCCAGGTACAGTGGGAGGGTGGGTAACC-GGTGCCTGGGTGAGCAGGGATGTGTCCCCTGTGGGGACCAGGCACT-GTCCCCAGCCATCTTGCTCTCCCCACCAGGCTGACGGCCTTTGTGCTGAAGGTACTGAGTCTGGCTCAGGAGCAGGTGGGCGGCTCACCTGAAAAGCTGCAGGAGACAGCCAAGTGGCTGCTGTCCCAGCAGCAGGCGGACGGTTCATTCCAGGACCCTTGCCCGGTCTTACACAGGGGCATGCAGGTTCGGG---GCTGAGGCCAGTCAGAGGATCCCAGGTGGGAGGGCCCTTCCTGTTCCCACCTGCCTGCCCCCTGCCCCACTCTTGGCTGACATCTTTTCTGCCCCCTTCAACTAGGGGGGCCTGGTGGGAGACGATGAGACTGTAGCACTCACAGCCTTTGTAGTCATCGCCCTTCAGCACGGGCTGGCCATCTTCCAGGATGACGCTGCAGAGCAGTTGAAACAGAAAGTGGTAAGTGTACCCGGGTGTCTGCCCTTTCCTGATCCCCAGCTACCCCCCTCCCCCCTACCCCTGCTTTCTCCCCAGGAAGCTGGGTGTCCAGCTCCCTGACCTTCCTCCCCACTTTGTCCTAGGAAACCTCCATCTTAAGAGCAAACTTGTTCTTGGGGGAGAAGGCAAGTGTTGGGACCCTGGGTGCTCATGCAGCTGCCATCACAGCCTATGCCCTGACTCTCAGCAAGGCTCCTGAGGACCTGCAGGAGGTTGCCCACCGCAACCTCCTGGCCATGGCCCAGAAGGCTGGGGGTGAGAGCCACGGGGATCCTGGCAATGAGCCTGGGCCATGGGGGACCCCAGGACCCCTGAGTGTGCCCAAAGGGAGAAATTGAATGAAGATCTTAAGGAGGAATGGAAGCATGAGCAGAGATAA-TTGGGGGAGCATCAG-----------------------AGGGCCAGGCAACTAGGGCCCGCCCCCCA--------TTCACCCATCGGTCTC--TGCACTTCCAGATAACCTGTACTGGGGCTCAGTCCCTGGTTCTCAGGGCAACGTCATCCCACCTACCCTGGTTCCTCAAGGCCCAACAGACCCTGTGCCCCAGGCCCCAGCTGTGTGGATTGAAACCACTGCCTACGCCCTGCTTGACCTACTGCTTCGGGAGGGCAAGTCAGAGATGGCTGACCACGCTGCAGCCTGGCTTACCCACCAGGGCGGTTTCCAAGGCGGGTTCCGTAGCACCCAGGTAGGAGCTGCCCGGGGGCTC---CGGGGGTGGGTGGTCTTGAGACAGAG----TGCCTGAGCGCTGGCTCA-CCTCCCCAGGACACGGTGATAGCTTTGGATGCTCTGTCTGCATACTGGATTGTTTCCCACACCACCAAAGAGAGGGAGCTCAATGTGACCCTTAGCTCCATAGGCCGCAGTGGGTTCAAGTCCCATGAGCTGCAGCTGAACAACCACCAAGTGCAGGGGCTGGAGGAGGAGCTGCAGGTGAGCCACTCCCT---------------CACCTGGCTTGCCATGCCCCCGCCAACCCTACTGTGGCCAGGCCAGAAGCTGTC---ACCCTCCCACCCCCAGCCCTGTGTAATCCCCATGGGAGCTTGTCCTGATATCCTTGTGGGAAGA------tacttgctgagtgacctagagaaagtcacctaatctctgagcttcatttatcttatctcaagagtaacatatgcagagtctacccaacagggcttttaggaggctgaagtgaggtagtggacgtggagGAGTAAACCTCATG--AGTTTGGGGTCAC-AGAAGAGGAGAGGGTGTGTTCGGGGAGGAGGTG-------------------------TCCTGTGTGCCTTCCTGACATCTCTTTGCCTTCTCTGTTCCTGCAAGTTTTCCTTGGGCAGCAAGATTAATGTGAAAGTGGGAGGCAACAGCAAAGGGATCCTGAAGGTGAGAGCCAACGGCCGTGAACACCTGGGTCCTGGC--CAGGGGTGGCCATGGTCTTGAGAGGGAGGCCTGAGGGCAGAGGT-CATGGTC-AAGGAAGGAGGGAGCCCCCCTGGGGTGGGCA----------------------------------------------------------------------------------GCCCCCATCAAGGCTGATGGT-----------ATACACA-CCCAGGGCTCTCCCCTGAGCCACAGGCCCCGTGTGTCTCCT------GGCACCTCCACCACAGTGCCACCCCAACCCCTTCTTCCTCCTGTGTGCCCTCACCTGGCTGATGGG-GCCCCTTCCCTACGGGATCCCAGGCACCGCTCTAGAGGCCACCTTAGTGTCCCTACCCC--AGCCCTTCCTTATGACCCTGGcatctcctcctctactgccctgctgcccagggccctgtcacttgtttcctggactctgtt---agatggtttt----------ggaacttctccctacccccaaatctctcgcctcttacccattgtgcacatggcaggggtatcaaccttctgaaaacactagtcagactaGCCTTGGAGAAAAGCCAGACTCTTCCACCTGC-------ACGATCAAGCGTCTGCCCACTTCCCTGACCAGACAGATCCGCTCATCTACACAGATCTCCTTGCCTTGAATGTCCTTCCCTCCTTCTT--CCCGAGTGACAGACTTGTTCTTCTCCTGGAAGCTTGGGCCAGAAGCCTTCTTGGAGCTTTCCATCCCAGCCTCTTTTATGCCCCCTGGAGAGCACTTGCCCCTGAGGGCAGGCCCCTGCCTCCT-GTCTCACTGGCTAACCCCAGACCTGGG------------CCATCTGTATTTATAGACTGGTCAG----GAGGGAGGAGAGGGGCCCAAAGCCCGGACTCCCTCAGTCCAGG-AGATGCCCC-AGGTGTGGCCCCGGAAAAGGTCTGTG-CTCCAAACGTGCCCTGTTCTC-----ACCCCTTGTTGAGCTAGATCCTTCGTACCTACAACGTCCTGGACCTGAAGAACACGACCTGTGAGGATCTTCAGATTGAAGTTTCGGTTGTGGGTCATGTTGAATACACAAGTGAGTGTTGGGGTCGG-AGGCCTAGGGCCCTGAGGGGGCCAGG--------GCCGAGTGCCAAGTCATGACATCATCACCAT----CGCTGTGCAGGGGAGGCCAACGAGGACTACGAGGACTACGTGTATGAGGAGGTTCCAGCTAAGGACGACCCGGACGCCAGTTCCCAGACCGTGACACCCCTGGAACTGTTTGAGAGGCGGCGGAACCGCCGCAGGCGGGAGGCCCCCAAGGCGCCTGAGGAGGAGGAATCCAGAGTACAGTACACTGTGTGCATCTGGTGAGCACTGGG-GCTGCACTGGCACAGGGGCATCGCTGGGCCAGGAGGCGGAGGCTGGGAAGCAGAGGCCGGGAGATGGAGGCTGCATCCACCAGCCAGGGCATGTGGGCCCCGG--------TCGTGTTGCTCTGCAGGCGCAACGGCAAGGTGGGGCTGTCAGGCATGGCCATTGCGGACATCACCCTCCTGAGTGGATTCAGCGCCCTGCGTGCCGACCTGGAGAAGGTGTAGTCAGCATCTTGGGGGCAGTGGGGGGTGGTGAAAGCGCTGTGCGCTCGGGAGCCTGCTCTGTCCCTGATCTTAGCCGCTGAGCCCTGTCTGGTGCAGGGCTCAGGGCTACCTCCCAGTGACCATCTGTCCTTCCCCACAGCTGACCTCCCTCTCTGACCGTTATGTGAGTCATTTTGAGACTGAGGGGCCGCATGTCCTGCTGTACTTCGACTCGGTGAGCAGGGAGGGGCAACCCAGGGAAGGA-----GGACACTGGGTTTAGTGAGCATGGGTGACAAGGTTCCCCAGGGGGCAGCTGGATCAGTAGCCAGCACTCTGGGAGAGAGCCTGTGGTGTGAGCAGGGAGACAGGACAGACGAGTGCTGCAGCAGGGTTCCGTGCAGGCTGGGAGGCCACCCTGTCACCCTGTTGGTGGGCAGGCGATGGGGGCCGA-----GTTGGGATGCGGCTTGGGGGCTGGTGCCAGTCAGCATTCAGTAAAGCTGAATTTACTCAACT--GAGGGCTGCCTTGCTTGTTCCTACTTGACTTTCCTCATTTTGGGGGGTTTTGTTTTTGATATTGAAGTGTATTTCCTGTTAGAAAGTGATAACAGTCACGGATGA-----GTTTTTGTCTTTTTGTGCCTTTATTTGGCTAAAGCAAACAATCATCCATCCTCTGATGGCCCTCAAAC a score=185072 s hg19.chr6_ssto_hap7 3300614 5963 + 4928567 TTCAAAAAAAGTTTTGGAACATTTACTGTAACCTCTGGGAGAAAATGTGAGAAAGGTGTGGTGG--CTGT-----CATTA-GCCAGCTGTTTGTAGGTCAGGGAGACCCC---------TACCCAGTGTGTGCAGAGGGGCCAG--CCCCCATCAGCTGGGGAAGCCTGGCTGACACATCTGGGTTGAACACAATAGAAAACACAGAGCCAACAAGATTCCCGGATAGGGAGCTGACGGTGCAGCAGCCTAGCTCAGGAGGGACACTGGCACGGCACCGTGT-GGACTGGGCCCGCGTGGGCACGAGGAG--GGGTC-AGGCCTGGGACCTGAGTCGGGGGGTCA-------GGCAGGATGACAGAACCTGCAGTTAGGTTGTGGCAAATAAAGGAGGACCCAGTTGTATCCATGACAAAGATGAGGCCGCGAGGAGGGCGAGTGGGTTTGGGGGCAGGCAGAGTGCCT-TGGAGAACTTACAGGTCCTGCCACAATCCTAATGCAaggatggagctgcaagttcagtttgggaatcatcagcctggattggtttggtggaagccagggagtggttgagacccccacaggggAGCTCTGAGGAAGGAAG---------------------TTCCGAAGGAGGGAACGTAAGAA---------ATGACCAGGTCAGAA----CCAAGGGTGGTCCAGAAGCTAACCCTTAGCTTAGGGACAGTTTCACAGAGAACACGTCCATGATGCAAGACTCTGCTGAGGGCCTGGAGCAGTGAAGACTGGGGCAAGGTCACCCTCTGGGAAGTGAAGTCACCAGAGACCTTGCGGAGCAGCTTTGAGAGTTCTCTGAGTAGGAAGGTAACAGAATGTGAAGGACACTGGAGAGAAGGCCAATAGGAAGCAAACAAAAACAGGCCAAGGAAACCCAGTACAGGGGGCTGCAGGGCCCAGGGAGTGGGTCCCTCATCTCTCCTCCCCACGCTTGGCCAGGTCCCCACCTCCCGGGAGTGCGTGGGCTTTGAGGCTGTGCAGGAAGTGCCGGTGGGGCTGGTGCAGCCGGCCAGCGCAACCCTGTACGACTACTACAACCCCGGTGAGCACTGCAGGACACCCTGAAATTCAGGAGAACTTTGGCATAGGTGCCCTCCTATGGGACAATGGACACCGGGGTAGTG----AGGGGGCAGAGAGCCCTGGGGCTCCCTGGGACTGAGGAGGCAGA--ATGGAGGGGCCTGTGCCCTAACT--CCTCTCTGTTCTCCAGAGCGCAGATGTTCTGTGTTTTACGGGGCACCAAGTAAGAGCAGACTCTTGGCCACCTTGTGTTCTGCTGAAGTCTGCCAGTGTGCTGAGGGTGAGACTGAGGGCCTGGGGCGGGGCAGTGGAGGCGGGATGGCCGGGGCCCCCCCCACACTGTCTGATGGGTTCCCCAACTTCAGGGAAGTGCCCTCGCCAGCGTCGCGCCCTGGAGCGGGGTCTGCAGGACGAGGATGGCTACAGGATGAAGTTTGCCTGCTACTACCCCCGTGTGGAGTACGGTCAGTCTTCCCACCGAGGCCCTGGCCTGACCCTCCCTCGGGGACCGGCCGTTTTGGTCTCT--CTGGGTGTAGCCTGCTCCTCTTACAGGTCATGCACGCAGCCTGTTTGCTCTGACACCAACTTCCTACCCTCTCAGCCTCAAAGTAACTCACCTTT-CCCCCTTCTCCTCA-CCCCCTCTTAGGCTTCCAGGTTAAGGTTCTCCGAGAAGACAGCAGAGCTGCTTTCCGCCTCTTTGAGACCAAGATCACCCAAGTCCTGCACTTCAGTATGAAGCAAACCGGAGAGGCGGGCAGGGCTGGGG--GGAGACAGGGAGGCTGAGGT---GTGGCCGAGGACCTGACCATCTGGAAGTGTGAAAATCCC---CTTGGGCT--------GTCAGAAGCCTTGGGCTTGGCCATAAATAGGGAGGCAGTGGCACCTCTCCATGGGG-GTGGCGAAGGTGGAATGAGAGGATCTACACAGAGTCCCCAGCCTGG--GCTCACCCTGCACCTTCTCTTCCCCTCTGACCACTTTTGCGCACGTCATCCCCGCAGCCAAGGATGTCAAGGCCGCTGCTAATCAGATGCGCAACTTCCTGGTTCGAGCCTCCTGCCGCCTTCGCTTGGAACCTGGGAAAGAATATTTGATCATGGGTCTAGATGGGGCCACCTATGACCTCGAGGGACAGTGAGTCATCTGGTCCCCTCA-GTCTCTTGTCCTCCCCATGCCTCGC------------------CACCTAGGCCTTGCCCCTCAGAAGCCAGATGCCT-GTGCTCTCCGTTTCCACCTGCCATCCTCCCGAGCCCTGCTGACTGCCCCTTTGCCCCCTGCAGCCCCCAGTACCTGCTGGACTCGAATAGCTGGATCGAGGAGATGCCCTCTGAACGCCTGTGCCGGAGCACCCGCCAGCGGGCAGCCTGTGCCCAGCTCAACGACTTCCTCCAGGAGTATGGCACTCAGGGGTGCCAGGTGTGAGGGCTGCCCTCCCACCTCCGCTGGGAGGAACCTGAACCTGGGAACCATGAAGCTGGAAGCACTGCTGTGTCCGCTTTCATGAACACAGCCTGGGACCAGGGCATATTAAAGGCTTTTGGCAGCAAAGTGTCAGTGTTGGCAGCGAAGTGTCAGTGTGTGTTGCTAGGGCTGAGAGCAGTGCCCCTGCC--CGATGCAG--TTCTGGGCAGGCCAGG-TTGACATAACCTTAGACTCTCTGAGCCCTGATGACCCTTGGGCTGTTCAGCTCTGCTAGAACCTCCCAGATGACCCGCTAGGAGTCTAGTGCTTCACAGGACCACCCCGAGCAGAACTGGGACCCAAGAGCCTGCACCCCAAGGACCAGAGTCCATGCCAAGACCACCCTTCAGCT-----TCCAAGGCCCTCCACTGCCCGGCTGTCGCCAGTcaccacggcctcagacagggcttgtgctcagctgacacctgtgacacagctcttctgcctcat---gagctgttgtccagctacacctccccgactctgtcctcgtgctgctggcggttctgaggtctgcagattttagctgagttccgggctgttgaaagcctgctgacgcttggttctgttatcagtggaatgaggtgactttcccggagttgtgcaatcctcaggtccggcagtgtcttctTCCAGTTACTGGTTTCAAACAAGCCAAAAGTCTGACTT--TGGTGTGTTTGTGAATCCTCTGAGGAAGCCGCTGTTCTCCTGGGGTCTCCCCTTCCCACCGGACCTGCCTAACTTTCCCCCATTTAGTGGCACACCTGGGGTCTTCAGAGATGACTCCGCGT-CTGTCCAAAGAAGTTTGGTGAGATCAGTTTCCGTAGAGGTCATGACAGTTCAGCAGCCTGCCatccagtcattcgacagaaattcgggaatctttcacttcatgccatgccctgtgccaggtgccagagatacagctgctcactccagggctcatcgctggggagacagataagaggacgggcagtccccaccctctgtgaaagatgtgatgtcagggagcagtgtggtcctgtg-------------gggcatctaaccaagtcaggggcattgccaggcagggacagggaaggcttcctggagcaggtggcctccaagtggggctctgaagactgagaaggagccaggcaaagag--caggggtagatgagggcatctggggcagaag---gagaatatacaaaggcccagaggccgggggca------ggacagggta---cctttggggacattgcatgtaattg-accacattcggagtttggatttggaagtgg--tggaagagatggagatggtgagacaagtag-----------------------TAAGCACGTCAGCCTTCCAGGTGC--GCTCCTTTCCGATGAGCACTGTCTTATCCCACGTAACTTTGAGAAGTTTGGGCCTTTCCCACTGTGGCAGAGGTTTCCTGAGGCTCTTGCATACATGGCCCTATGGTTGCTCATCAGATCTTTCTCCCAGTAGCTGCTCAGCATGGTGGTGGCATAAGCCCATTTTCCGGAGCCAGGGATTCAGTTGC------AGCAAGACATGGCCCGG-TCTGGGAGGTCAACCATGAAGAAGGCAGTAGCTGTCATTGCCCA----ACCCCA----GAAATCCCAATCCTGTTTTCTCCCTCTCAGTCCTGATCATGGATTCAGCAGCAGCGAACTCGCCAATG---------------TAGTGGGTGGCACAGCCAGGGTCTTGACTCTGGCTCTGCAGTAGCACAGTCTGGAAAAGCTCTGAGGGGAGAG------------------AGACCCCCACTGGTCCGAGGGTCTGG-CACAGAGCCAGAAATGGGGGGGAAGGTATGGGGCTGGGTCGCCTCTGACCTCTCAGGTACCATCCAGGAGGCCCTGGCCTCTCACTGAACCCGGCCACTCCTCTTTGGCATGGCCTCTTCCCAAATCCCCAAACTGCCTCCTTACTCACAAAAGTGGTCTCTGAGTGTCAGTCCAGTGGGACCCCCACCCCTTATGGCTTCAGTTCCCCAAATAGGGCTGGACCCTTGATCCTGATCCAGCTGTGGCTATCCAGCCCCTTCCTGGGGACTTTGGACTT--------TGAGGGGGGGC-------------ATGCCCAGTTGTGCTGGGAATCCATACTTTCCCTGG--CTGGAGTAG-AACCTGTGGACTGTAGTCCTGAGGGCAGTCATGTTCTGCCTGTGCCTGGAAACACAAGAAACTTGACTGCAGAGAGAAGAAAGAG---------------GAGAGAGGAACAGAGCGAGGAAACTGCCCGTCTCCGGGGCTTTTTCTGTTCCCTATCCTTGGCTTTCTAAGACCAGTGGGGTCCCCTCCTCTGCTTCTTTTTCCTGAGTTCTGTGAAATTCCCCAATCCTTAC-----------TTTTTGTCTCAAACCAGCTCAAGGTGGGCTGTTTTCCTTTCAACCAAAGAAAGGTGCTCCTGGTGGCTAAAGGTACATATTCGACAGCTAGATTTCCAGGCTGGAATCCTGCCCtccacaacatgcgaacaatacccgtgttgcatatagagcatggctgtgaagagttgagtgagtgcccacaaagcacttagagcagtgtctggtacatgctaTTACTCCGCAGCGGGAAACCACTTCCTCCTTTGTCTTCTgggcacttttgtgagtgaaaggaggcactaataacaatcacactggga-tacctgtatatactggaatgccccaggcaaaccaggCTTAAACTGTATTACTCTATCTGTAGCTTAAACTAACAGACAAACCCACACAAATCACATTTTGTTCTTCAGGCGATTCAGGA-AGGCCTATTAGGCAGGGACTGCCATTTTCTCTCTGAGACAAACATCATGCCAGTAAACTGGCCCACGGTGGGGTGGCAGAGGGAGAGGGCCCAGGTC--GGGGCGGACACCCTTGCCTGCACGGGTGATGTGGAACCAGAAAGCTGACTCTGGATGCAGGAAAAAGGTCAGGGTTGCATTTCCCTTCCTTGCTTCTCGATGGGTGATTAA--TTTTTTTTGAAATACGGACGTCCCAAGGCCAATGAGACTGGTGTCATTCCAGAAAAGGGCCACTCTGTGGGTGGGTCGGTGGGAAGGCACCTGAGGGTGGGG-TCAAGGGAGGCCCCAAAACAGTCTACACAGCAGGAGGGATGGCTGGGGCTCTTGAGCTATAAGTGGCACC-TCAGGGCCCTG--ACGGGCGTCTTGCCAtgctgctcctgggcctgctgctgctgctgcccctgctgGCTGGCGCCCGCCTGCTGTGGAACTGGTGGAAGCTCCGGAGCCTCCACCTCCTGCCTCTTGCCCCGGGCTTCTTGCACCTGCTGCAGCCCGACCTCCCCATCTATCTGCTTGGCCTGACTCAGAAATTCGGGCCCATCTACAGGCTCCACCTTGGGCTGCAAGGTGAGAGGCTGATCTCGCTCTGGC-----CCTCACCATAGGAGGGGGCGGAGGTGACGGAGAGGGTCCTCTCTCCGCTGACGCT--GCTTTGGCTGTCTCCCAGATGTGGTGGTGCTGAACTCCAAGAGGACCATTGAGGAAGCCATGGTCAAAAAGTGGGCAGACTTTGCTGGCAGACCTGAGCCACTTACCTGTAAGGGCTGGGG s canFam2.chr12 4448372 5527 + 75515492 CCCTCAAACTTTTTTCGAATGTGAACTGTAATCTCTTGGAGAAAATGTGAAAAAGATGTGTTAATACTGTAACACCATTAAGCCAGGCACTTGGGGATCAAGGAACCCCCCCACTGCCCTGCCCAGTGCCTGCTGACGGGCTGGACCCCCCATTAGCCTGAGAAGCTGGGCAAAGGAGTTTGGTT-----------GAAGATGAGGGGCCAGGAAGATTCCTGGGCGAGGAGTTGAC--TTAAGCAGCCCAGCTCAGGAGGGAAAGTGGCAGGGTACTGGGCAGGACCGAGCCAGTGTGGGCGTGAGGAGACGGGTCTGGGCCTAAGTCAGGAGCTGCAGGGTCACAGAGGTGGGCGAGTGACAGCACCTGCCGTTAGGTTATGACAGATAAATGGAGACCCTGTTGCACTGGTGATGAAG-CAAGGCTGTCGGGAGGG--GGCGGGCTTTGGGGCAGGCAGAGGGAGTCTGGGGAACTTCTAGGTCTCACAGCAATCCTAATGCAAGAATGAGGCTGAATGTTTAATTTGGGACTCATCGGCTGGGAAGGTTTTGGTGAAAGCCAAGGAACAGTTGAGACCTC---AGGGGAATGCAGGGGACGGGAGGAGCCCAGGCCCCAGACTGCGCCTCCAGGGAGGAAGAAGAGGAACGGTCACGCATGATGAGGTCAGAGAGAGCCAGGGACGG-CCAGAAGCTA-CCCTGAGCTTAGAGA--GTTTCATGCACAATGTGTCCACGATGTGAGACT--------GCCCCTGGGCACTGGAGACTGCGAC---GTCACTGACTGC-CAGTGAAGTCAGCAGAGACCTTGCAGAGCAGTTTTTAGAATTCTGGCAGCCAGAAGGTACTAGAATGTGAAAGATACTAAAGATAAGACCAG----------------ATAGGTCAAGGAGATGCAGCACAGTGGCCCGCAGCGCCCAGAGAGCATA-CCCTGACCTCTCCTCCCCAC--TGTGTCAGGTCCCCACGTCTCGGGAGTGTGTGGGCTTTGGAGCAGTGCAGGAGGTACCTGTGGGGCTCGTGCAGCCGGCCAGCGCCGCCCTGTATGATTACTACAACCCTGGTGAGCACCTGGGGACACTCAGCAGGTGGGGAG----------CAGGTGTCCCTGTGTGAGACATCAGGAGCTGGGGCCATGCCGTGGCAGGCAGGATGTCCTGCGGCTCCTTGGGA-TGAGGTGGGGGGTGGGGGAGGGACATGAGCTCTAGCCGCCCTCTCTCTTCCCCAGAGCACAAGTGTTCTGTGTTCTACGGAGCACCCACTAGGAGCAAACTCTTGTCCACGTTGTGCTCTGCTGACGTCTGCCAGTGTGCCGAGGGTGAGACCCAGGGCTGGGAGGGAGGGCAGGGAGCCGGTGAGGCGAGGGCCT-----GCGCTGTCTCACCTGGGCCCCTGATGCAGGGAAGTGCCCCCGGCAGCGTCGTGCCCTGGAGCGGGGGCTGCAGGACGAGGCCGGCTACAGGATGAGGTTCGCCTGCTACTACCCCCGAGTGCAGTACGGTCAGTCTTCC----GCGGCC--------------------------GCCGCCAGGGTCTCTGCCTGGG-----CCTGCTCCT------------GACCACAGCCGG-----------------------------------------AACACACCCGTGCTCCCTTCTCTTAAATTCCCCCACAGGCTTCCAGGTTAAGGTCCTCCGAGAAGATGGCAGAGCTGCCTTCCGCCTCTTCGAGACCAGCATCACCCAAGTCATTCATTTCAGTATGAGGGGAAC-GGATGGGCGGGT--GGCTGGGGTGGGGGATAGGGAG-CCGAGGTCAAGGGTTTGTGGCCCGGGTGCTCTGGAC-TGTGTAAGTTCAGGGCCTGAGCTCAAAGCCTTTTGGAAGCTCCGGGCTTGTCCATAATTCGAAAAGCGGCTGTACCTCCCCGTAAGGAGCGGTGAGGGCCAAATGAGAGGTTCCACGCC-AGCCCTGGGCCCCCCCGCTCACCCCGGACCTTCTGCCCCCCTCTGACTACTCCTGTGTACATCATCCTCTCAGCCAAGGACACCAAGGCCAAGGTCGGTCAGACCCGAAACTTCCTGGTTCGAGACTCTTGCCGCCTTCGCTTGGAACCTGGGAAGGAATATTTGATCATGGGTCTGGATGGGGCTACCTCGGACCTCAAGGGAGAGTGAGTTCTCTGGGCCTCCAATGTCTCCTGCTCTCCTCATGCCTCATGAGGGAATGGATGCCCAGCACCCAGACCTGCCCCGTCAGAAACGAGGTGCCCCGTGCCCTCCTCTCGCACCTCCCCACCCTCCCACCCCTGCTGACTGCCTTTTTGCCTC-TGCAGCCCCCAGTACCTGCTGGACTCGAATAGCTGGATTGAGGAGATGCCCTCCAAACGCCTGTGCCAGAGCACCCGCCACCGGGCAGCCTGCGCCCAGCTCAGTGACTTCCTCCAGGAGTATGGCACTCAGGGGTGCCAGGTGTGAGGGTCACCCTCCCGCCTCCCCCAGCTAATACCTGGATT----------------------GTTGCTGTACCCGGGCCCCTGGACAA--------------------TAAAGGCCTCTGGCAGCAAAGTGTCAGTGT----------------------GTCTCAAGGATTGAGAGCAGTGCCCCTGCCACCTTTGCCAGCTTCTG---AGGCCAGGGTTTGCATCATCTTCAGTTCTCAGAGCCTGGATGACCCTTGAGAGTGTC-------------TCTCTCAGATAATGCACTGGGAG------------------CATCCCTAGTGGACTGGTGACCCAGCAGCCTGTACCCTAAGGCTCTGGCATCACGCCGAAACCTCCCTTCCGCTCTGCGTGTGGGGTGCTCCCCTGCCCCACTGTGGCCAG---CGGGGGCCTCCGGCACAGCTCGTGCTCAGC-----CTCATGCCTTGGCTCTTCTGCTTTAGTTAGAGTGGCTGGT-GGCCACGTGCTTCCCGCTCTGCCCTCGAGCAGCTGTGAGTCCTGGGGTCTCCTGCTTGGAGCCGG--------------------------CCCCTGATCTCCTTA-CAGTG--ATTAGGGGACTTGCCCAGAGTTGTACAAG--------------------------------------------------------GACTTGGTGATGTGTGTATTAATACACTGGGCCAGCC---------------------CTCCCTACCTG-CCAGCCTAGCTCTCCCC-ATGTGGCGGCCCCCCTTGGGTCT-CGGGGCTGACCTAGAACACCAGCGAGAGAAATTGGCCGAGATCAGCTTTGATGGAAGTCT-----GTTCAGCAGCCTGCCACCCGACCGTGCAGCAGGAATTTGTGGCACTTTCACTCCATGCTGTGCCCTGGGCCAGGT----------------------------------------------------------------CCCCGTCCTCTG--AAACATGTAATGAC-TGGAGCTGCCTGGTCCTGTGCGGCACGTAGTTGgggcatctgacccagtctgggaga-------ggggagaaggggaaggcttcccggaggagatgacatctaacttgggttctgaaagct---aaggcatcaggcggagagggtgggggtgggtgagggcacttgaggcagacgatggagaccatg-aaaggcccagaggcCAGGGGCACTGGAGGCACTGGAGAAGCCATTTGGAGGCACTGCTTGTAATCCCATTGTGTCTGAAATTTGGATTTGGAGGTGGGGTGGAAGAGCTGGGGCCAGCAAGGCGATCAGGTCACTTTATGAAGGTTTGTTCCCACTCAGGCCAACTTCCCGGCTCCCTGTTCTTTCCTGTGGAGCCCC-TCCGAAGCCATGCAACCTTGGGAGGTTCTGGCCTCCACCCACGTCTCAGAGGCTCCCCAAGGCTGTTGCTGCCATGGCCCCTTGGCTGCCCATCAGGTCTCTC-CCCAG-AGCTGGTCAGCAGGGGCGCAATAAAG---CATTTACGAGAGCTGGGG-TTCAGCTGCTGCGGTGGCGAGACGCGGCCCGGGTCTGGGGTGTTAACTATGAGGAAGGAAGCAGCTGCCATTGCCCATTTCACCCCACCCCGAGATCCCACCCCTGCTTGTTCCCTCCTAGCCCTGGACCTGAGCTC--CCTCATCAGGACCCCCAATGGCAGCTCCCTCAAGCTGGTCGGTGGCTCGGCCAGCATTTCCATGCAGGGTCTCCAGCCACGTAGCCTGT----GCTCTCTGGGTAGAGCCAAGGGCGAGAAGGTCTAAGTCCTCCTGGGTGCAAGGATCAGTTCACAGAGCCAGGG---------------TGGGACCTGGTCACTTCCGAGCCCTCACTCCCACCCCAGGCAGCCCTGACCTCTCACTGGCCGCTATCACCCCTCCTTTG---------------AGCCTCCCAGCTGCTTCCTCCCCC-CTAAAGTGGTTCCTGCCTGCCCTACCTGC----CTTGCACCCTTTAGGGCAACAGCTCCCAGAATAGGGCTGGGCCT------CCATCCCAGCTGTGGCTGTTGGGTCCCTTCCTGGGGACTTTGGCATCAATGGGGATGGGGGGGGGCGGGGGCAGGGTTCATGACCGAACGTGCCAGGAA-CCTCCCTTGACCTGGGGCCGGACCAGTAACCCGAGGACTCTGACCCGGGAGGCAGTTCCATCCTGCCTGTTGCAGGGAGCACAAGCAGCCC-AGTGCAGGGAGAGGAGAGGGCGGGCAGGCAGACTCGGAGGAGGAGCAAGAGAGGGCAGCTG--------------------TGCTCCCCACCCCCCAGATTCCAAGGTCAGTGAAGTCCCTCTCT-TCCTGCTCGCTCC--GGTTCTCTGAGGTCCCCCTATATCTGCACAGTGAGTTCTTTTTGGCTCAAGCCAGCTTGAGTTGGCGCCTTTCCCCTGCCACCACAGA------------GCATATCAAGG-ACATA-------GTAAGAGCTCCAAACTGGG----------------------------------GGGGCATGTAG---------------------------------------------------------------------------------------TTCTTCA--------------acttttgagactgaaatagggcacgattaataattacactgggactgcaggtgtaacctgga-tgacccaggcagaccaggccgaaa---ggtcaccccaTCTGTAGGTGAAG--AACACGCAGGCT-GCTTGCATCTCCTTTTGTCCTT-GGGCAAGCCAGGACGGGCATGTTAGGCAGGGATGGCCGTGGTCTCTCTGAGATAAAGCTT-TGGCGGGATGGTGGTCCCAGGTGGG-TGGCTCTGGGAGAGGGCGCAGGCCCGAGAGTGGCCACGTTGTCCTGTGTGGTTGGTGTGCAGCCAGAAAATCGATTCCGGCTGCGGGAGAAAGGTCAGGGTCACGTC-CCCTTCCTTTCTTCTTGATGGATGAGGGACCTGTTCTTTGAGATGTGGACTCCCCAAGGCCAGGGAGGCCGATGCCCTTCCAGGAA--------TACGTGGGCGGGACAGTGGGCCGGGACCCGACGGAAGGACTCAAAGGAGGCCGCAGAG--GTCGGAGCA-CAGGATGGATGGTGGGGCCGCAGGAGCTATAAGTGGCCCGGCCAGGGCCCTTGCACGGGTCTCTGGCCATGCTACTCCTCGG---GGTGCTGCTGCTGACTGTGCTGGCTGGTGCCCGCCTGCTGTGGGGCAAGTGGAAGCTCAGGGGTCTGCACCTCCCACCTCTTGTCCCTGGCTGCCTGCACCTGCTGCAGCCCGACCTTCCCCTCCACCTGCTGGGTTTGACGCAGAAACTGGGGCCCATCTACAGGCTCCGCCTGGGGCTGCAAGGTGAG--TCTGCCTCTGCTCCGTCGCCAGCCCCACCGCGTG-------GGAGGT-------AGGGTCCCCTTCCTGCTGACACCCCGCTCTGACTCCTCCCCAGATGTGGTGGTGCTGAATTCTAAGAGGACCATCGAGGAAGCCATGGTCAGGAAATGGGTGGACTTCGCCGGCAGACCGCAGACGCCATCCTGTAAGGGCTGGGG a score=310811 s hg19.chr6_ssto_hap7 3306735 6270 + 4928567 AAGCTCTTGGGGGGCATATCTTCAGGAGAAGAAGCAGGTGTTGAGGAGGCAGAAGAAGGTCAGGCCCTCGGCTTCCTTGGTCAGTTCCCACCCTCCAGCCCCCAGCTCCTCCT-GCAGACAAGCTGGTGTCTAAGAACTACCCGGACCTGTCGTTGG--------TCTCTGCTCTGGAAAGCCCACAAGAAGCTCACCCGCTCAGCCCTGCTGCTGGGCATCCGTGACTCCATGGAGCCAGTGGTGGAGCAGCTGACCCAGGAGTTCTGTGAGGTAAGGCTGGGCTCCTGAGGCCACCTCGGGTCAGCCTCGCCTCTCACAGTAGCCCCCGCCCTGCCCGCTGCACAGCGGCCTGCTGAACTCACACTGTTTCTCCACAGCGCATGAGAGCCCAGCCCGGCACCCCTGTGGCCATTGAGGAGGAATTCTCTCTCCTCACCTGCAGCATCAACTGTTACCTCACCTTCGGAGACAAGATCAAGGT------GCCTCACAGCCCCTCAGGCCCACCCCCAGCCCCTCCCTGAGCCTCTCCTTGTCCTGAACTGAAAGTACTCCATCCTTTCCTGGCAGGAGGACAACTTAATGCCTGCCTATTACAAATGTATCCAGGAGGTGTTAAAAACCTGGAGCCACTGGTCCATCCAAATTGTGGACGTGATTCCCTTTCTCAGGGTGAGGACCTGGAGCCTAGACACCCCTGGGTTGTGGGGGAGAGGCTGGGGTGGAGGGAGAGGCTCCTTCCCA-CAGCTGCATTCTCATGCTTCCTGCCGCAGTTCTTCCCCAATCCAGGTCTCCGGAGGCTGAAGCAGGCCATAGAGAAGAGGGACCACAACGAGGAGAAGCAGCTGAGGCAGCACAAGGTGGG--GACTGTGTGTGGACGGCCTCCCC----TCGGCCCACAGCCAGTGATGCTACCGGCCTCAGCATTGCTATGAGGCGGGTTCTTTTGCATACCCCAGTTATGGGCCTGTTGCCACTCTGTACTCCTCTCCCCAGGCCAGCCGCTCAGCCCGCTCCTTTCACCCTCTGCAGGAGAGCCTGGTGGCAGGCCAGTGGAGGGACATGATGGACTACATGCTCCAAGGGGTGGCGCAGCCGAGCATGGAAGAGGGCTCTGGACAGCTCCTGGAAGGGCACTTGCACATGGCTGCAGTGGACCTCCTGATCGGTGGCACTGAGACCACAGCAAACACCCTCTCCTGGGCCGTGGTTTTTTTTGCTTCACCACCCTGAGGTGCGTCCTGCGGACAAGCAAAAGGCTCCTTCCCAGCAACCTGGCCAGGGCGGTGGGCACCCTCACTCAGCTC---TGAGCACTGTGCGGCTGGGGCTGTGCTTGCCTCACCGG-CACTCAGGCTC----ACTGGGTTGCT-GAGGGAGCGGCT--------GGAGGCTGGGCAGCTGTGGG-CTGCTGGGGCAGGACTCC-ACCCGA----------------TCATTCCCCAGATTCAGCAGCGACTGTAGGAGGAGCTAGACCACGAACTGGGCCCTGGTGCCTCCAGCTCCCGGGTCCCCTACAAGGACCGTGCACGGCTGCCCTTGCTCAATGCCACCATCGCCGAGGTGCTGCGCCTGTGGCCCGTTGTGCCCTTAGCCTTGCCCCACCGCACCACACGGCCCAGCAGGTGACTCCC--GAGGGTTGGGGATGAGTGAGGAAAGCCCGAGCCCAGGGAGGTCCTGGCCAGCCTCTAACTCCAGCCCCCT-TCAGCATCTCCGGCTACGACATCCCTGAGGGCACAGTCATCATTCCGAACCTCCAAGGCGCCCACCTGGATGAGACGGTCTGGGAGAGGCCACATGAGTTCTGGCCTGGTATGTGG-----GGGGCCGGGGGCCTGCCGTGAAA----------ATGTGGTGGAGGCTGGTCCCCGCTGCCGCTGAACGCCTCCCCACCCACCTGTCCACCCGCCCGCAGATCGCTTCCTGGAGCCAGGCAAGAACTCCAGAGCTCTGGCCTTCGGCTGCGGTGCCCGCGTGTGCCTGGGCGAGCCGCTGGCGCGCCTGGAGCTCTTCGTGGTGCTGACCCGACTGCTGCAGGCCTTCACGCTGCTGCCCTCCGGGGACGCCCTGCCCTCCCTGCAGCCCCTGCCCCACTGCAGTGTCATCCTCAAGATGCAGCCTTTCCAAGTGCGGCTGCAGCCCCGGGGGATGGGGGCCCACAGCCCGGGCCAGAGCCAGTGATGGGGCAGGACCGATGCCAGCCGGGTACCTCAGTTTCTCCTTT-ATTGCTCCTGTACGAACCCCTCCCCTCCCCCCTGTAAACACAGTGCTGCGAGATCGCTGGCAGAGAAGGCT---TCCTCCAGCGGCTGGGTGGTGAAGG---ACCCTGGCTCTTCTCTCGGGGCGACCCCTCAGTGCTCGGCAGTCATACTGGGGTGCGAGAGAGGTGGGCAGCAGCTCAGCCTCCCC---CCGCTGGGGAGCGAAAGTTTCTTGGTCTCAGCTTCATTTCCGTGAAGGGCACCGAGAACTCGAAGCCCTTCCAGTGGTACCAGCTCACTCCCTGGGAAAGGGGTTGTCAAGAGAGAGTCAAAGCCGGAT----GTCCCATCTGCTCCTC----------CCGTTCCCC-----TTAAGGAGGTGGCTCCCAGCACTCAACCAACCTCCCCGCAGAGCTCCCTTCCTGACCCTCTGCCGCAGAGGATTGAGGCTTAATCCTGAGCTGGTCCTTTCCAGCCAATAAATCAACTCCAGCTCCCTCT------------GCGAGGCTGGCATGATTGTTCCATTTCAC-------------------CCAGCCGCTCAGTCCCTTG-CCTGTTACACTGTGGGGCTGAAACCTAGGCAGGCCGAGCCCCAGCCACCCCAGCTCTGAGCCGCCTCCCCACCCCTCACCTGATGGTCCACTGTGCTCCCGTAGAGCCCGTTGAGGTTGGCGTAGTGGCAGTTCCTGTACCACCAGGCCCCTCGGTAGGAGACAGCGCAGGAGATGAGCAAGTTGTTGGGGTTCCGATCACGGGCAGAGAAGACACTGCCGCTGTGGTAGCTCATGGAGTCCCCTGGGCAGGGTGGAGGAAGGAGCCATGAGGGCCTCCCCTCCCA-GCCTCACCCTCC-CAGCCTCACAGCCTCTGCTTACCTGCGGTGCCGTGGTAGCCCTCCAAGTGGAGGCGGTAGTACTCCGCAGCCGAGTCTACGTGGAAGGAGTCGTACTGGGCGAACACAGCCTCGTCCCCAGCCCGCAGGTCCACGCGCATGGAGTAGTCACCTGCCTGTGTCAGGCTGTGCAGGGCCTCATTGCCTGGGGGTGGGATACGTGCCCTCATCAGGGTCCT------GGTGTCCACAGGGCC--CCCATCCCCATCCGTAGTTCCCCAGTCCCTGTGAGGCACTGACCCAGCCAGAACTCTCCAGAGATGTTCCCAAAACCATGGGCATAGTCCTCCCAGTCCCTCCAGAAGTCTGTCTGTCCATCCATGTGGCGCTGGAACACCTGGGAAGCAAGTGGGGGCACCATCAGCCTCTGGCTCCCGGGGCAACAGCCCCTTGCCCTGCACAGACCCCTGGGC-TTCCCAATGCCACCCACCAGCCAGCCGCCCCCATCAGTCTCCATGTCCCAAAACACGTTCAGGGGCCGCTCCCGGTTGCCGTTGAGGAAGATGGTGCTGGTCCTGGAGGCACCGGCTCCGTTCTGCATCTCCTCCCCGCAGTCCCTGGGGAAGGGGATCCGCAGCCCACCTGGG-AGAGGAGAGC-AGGGGCCAGTCCT-TTTCCAAGCCTTAGGCCCTGGCTGCCCACCCAGCCCCCGGCCCCGGGCCCGTGCGTCCAGGTACCCGTGGTGAAAGAGGTGGACACGGGCGGCAGGAGGCTCTGGCCCCACATGGCCTGGAGCCGTGCATTGTAGGAGGTGGAGGGAAAGAGGCCAAGGAGCTGGTGAGATGTGATCCCTCCTGGGAGCAGGATCTCCTGTGGGACAGACAAGGGG-GGGTCAGGGGAGAGGGAGGTGGAGACCCTCCGGGAGGGCCAGAGG-----CAGCACCTCCTGGAATCACCCAGGGAGGGGAGTTGGGTCAGTGGGGCCGGGGCACCTGGGTCTGTCCACCAGGGGTGTGGAAGCTGAGCAGGTAGCCTGCGGGCCGGACTGGGGGCTCAGTCCAAGTGAGCAGGGCGGTGCGGGGGGTCACTTCCTTGGCCTCCAAGTCCCGAGGGGCCTCTAGCCCTAGGAGGGAAAGCAGGAAGAG------------------------------GAGATGGGGATGAGGCCCAACCTGGCTCCCTCTACCTCCTCTCCCTGTCCCACACACCCCACAGACCCTACCTGTGGTGAAGGTGATGCTGGCTGGGGAAGTGAGGTTGGGGCCCCGCAGGCCACGCACTGTGGCGGTGTAGTTGGTGTGGAGGACAAGGTCATGCAGGGGGTAGTCCACCGCGCTGCCTGGGGTCTCCGCCTGCAGAGGCGGGGCTGGGAGTGTAGAGAGGGGCATCAAGGCCTGCCCCCTCCATCCTCGGCCAGAGTCCAGCCTCCCCCCTGCAATCCCCACCCTGAACAAGTCCCCTCCAGAGGCCTCAGGCCTGCTCACCCCCAGGGGCTGTGACCTGGACGTCATAGGTGTCCACAGGATTCTGGGGGGGCTTCCAGTGCAGCACGGCGAATCCCTCGGTCAAGTTCAGTGCACGCAACTGTGTGGGACCGTCAGGAACTGGGGGAAGGGGAGGGGCTCAGAAGGGTCCCCGCGGCTCTCTCTACTCCGTGCCTCCCCAGACTCCACTGGCCTCCCGTCCGCAATCGGAGCCTCCACCACCTCCCTTTCACCCTCCTCGTTCTCTC------TCAAC---TCCCACCCATG---------------------CCATTTTCTTGACTCCCAC----------------------------------------------CTGGAGTTTCTGGGTCCGGGCCCGGCCGTCCACCTGCACACTCTGAGGCTCCCCTGAAAACGTTGGGGATCGAGGGTT-ACCCAGGGAACCCCAGGGCGGCTGGAGGGTGGGCAGAGTGCAGGGGG---GAGAGGAAATGCGAGGCGATGAGCACATGGCAAAGGCACCACCTCCGTCCGCCAGCTGGTAGGAGACTTTGAAGCTGTCCGCCCGGGATGGTGGGGGCATCCAGTTGACCTTGGCTGAGGTCTCCCTGATTTCACTGAATTGGAGGTCACGGGGGCTCTCCAGAACTGCAGAGGG------GTCAAGGAA---CAATGACGCAGGCAGGGGCAGGGAGGCTCCTCCCTGCGAGTCCCCCCCTCGCCTCTGCTCCAG----------------CACAGGCTCACCACC--CCTTTTCCTCTAGTCCCCAGGAATGGAAGTCGCTCTGCAGATTCCTC-CAGGCCCACCACCAACTCGCCCACCCCCACCGCTGGCTGAGGCACTAGGTCCC-CCCCGTGAAGTACAAAGACCCC-CACTTTGGGGCAG------AGTGTG-----TGTGGGTCCTTACCTGGGCTGAGGGTGCGGGCGGTTCCCTGGATGCTGTCGGCCTTGTGGGGTCCTCGCAGCCCATACAGTGTCAGGCTGTACAGAGTCCCGGAACGCAGGTCCCGGAGCACGGCCGAGTGCCGCGTCCCCGGCACCATCAGCTCGCGCTGCAGCAGTGGACGCGGATGCGGCTCCAGAGTGCTTGGTGATGGAACCCCAAAGCGGAGCAGGAAGGAGTCGAAGGCCCCCGGTGGGGCCTCCCAGTTGAGCCTCAGTGAACTGGTGGTCACGTCAGTCACAGACAGCTGGGACAGGCGGGGCCTTGACTCCTCTGAGGTCTGACCAGCAGGAGCCAGCCCTGCACGGAGTGGGTGGGGGAGAAGGGATTGGAGACAGAAGCACACCAGCTTGGTGACCCAGAGCACGTCCCTTCCACC-CCCCTCCCTGCCCCC--GTTTCTCTATCTGTAACCAGGGACTTGCAGCCACAGGGGGGTCCTGTGGGGCAG------AGCTAAAGGCCAC--------------------TCGCATCCAGCCCATCCATCCTCTCTCCCTGGTACCCGCCTCACGCTCTTTCCCTGCGACCACCCCTTCTGAGC-CCCCGTTTCTCCCTTCTGAGTCCTAGGCTAGAGGCCGGAGACGCCT-------------------GGTGGTACCTGTGGTGCCCTCAGCTGAGAGGGGCCCCAGGCGCTTCCCTTCATGGAGGCCATAGAGGAGGAACCTGTAGGGGGTGCTGGGCTCCAGGCCTGAGATGAGGATCTTGCTCTGGTCGCCGTCCACGAGCAAGGCCTGGGGCTGCCCGTTCGTGTCCTCATACTGGACCACGAAGGAATCAAAGGGGCCCTGGGCCACGCTCCACGAGAGGCGCATGGAGTCTGGGGTTGTGTCGGTCACGGTCAGCACTCCTAGGCGGGGCTCTTCAGGAGGCTCAGGGGCCTCTGGGGC-TAACTCT--GGGGCTGGTGTGTCCTCTTCTGGGGCTGCGTGGGAGAAGCCCAGGGGAGAATCTGAGTGAGGGGCGCCATG s canFam2.chr12 4453899 6326 + 75515492 CGGTTCTCGAGGGACGTG-----------------GGCTGTCA--GAGGCCGG-GAAGGCCAG-CCTGCGGCTCCCATGGTCCGTCCCTCCCCTCT---CCTATTCTCCTACTCGCAGACAAGCTGGTGTCTCTGCACCACCAGGACCTGTCCCTGGGGGACTACTCCCTGCTGTGGAAGGCTCACAAGAAACTCACCCGCTCAGCCCTGCTGCTGGGCATCCGCAGCTCCATGGAGCCGCTGGTGGAGCAGCTGACCCAGGAGTTCTGTGAGGTGAGGCTGCCGCCCCACAGCCGCCCCAGCTCCGCTGCCCCTTGCCCGGCGGCGCCCG-------------------GCCTGCTTAGCTCCTGTTCCTCCTCCGCAGCGCATGAGAGCCCAGGCTGGCACCCCTGTGGCCATCCAGAAGGAATTCTCTTTGCTCACCTGCGCCATCATCTGTCACCTCACCTTTGGAGACAAGGTCAAGGTTTTCTTGCCCTCCATGTGCTGGGGCCCTTCTTTAGCCTCTCCCTGGCCCTCTC-TGGTCCTGAACTTT--TTTCTTCTTTTTTTTTCGGCAGGAGGACACCTTAGTACATACCTTTCATGACTGTGTTCAAGACCTGATGAGAACCTGGGAGCACTGGTCCATCCAAATGTTGGACATCATTCCCTTTCTCAGGGTGAGGGG-TGCAGCCCAGAC-TCCCTGGGTCCTGGGAGGGGCGGTGCGGGGGGAGCAG-GCCTCCTTGCCAGCGGCTGCACCCTTTTGCCCCCTGCCCCAGTTTTTTCCCAACCCAGGCCTCTGGAGGCTGAAGCGAGCCTTGGAGAACCGGGACCACATCGTAGAGAAGCAGCTGAGGCAGCACAAGGTGGGAAGGCCGCGTGGGCCTGGCTCCCCCGCAGTCTGCCCCCAGGTGGCGCACCTGCTGGAC--------GCGCTCAGGCGGGCTC---------------------------------------CTCCTC---------------------------------CCCACCACAGGAGAGCATGGTGGCAGGCCAGTGGAGGGACATGACCGACTACATGCTCCAGAGGGTGGGGAGGCTGAGAGCAGAAGAGGGCTGTGGACAGCTCCTCGAAGGACACGTGCACATGTCCGTGGTGGACCTTTTCATTGGCGGCACCGAGACCACGGCCACCACCCTCTCCTGGGCCGTGGCGTTCTT-GCTTCACCACCCTGAGGTGCGCCCTGGGGGCAGCCC---GGCTGGGGCCCAGGAACT---------CGGTTCGCTGCCTCCCCCCGCCCCCATGGGATGCGTTCACCCAGGG--GCGCTTCTCCCAGTGGGCACGAAGGCTCCTCCACTGGGTTGTTCTAGGGAGGGGCCCGGGGCCGGGAGGCCAGGCAGGCCTGGGTCAGCTACCTCAGGGTTCCCACCCCAGACACCAGGCTTGCTCCCATTTCCCAGATTCAGCAGCGACTGCAGGAAGAGCTGGATCGGGAGCTGGGTCCTGGAGCTTCAGGCTCCCGAATCCCGTACAGAGACCCCACACGCCTGCCCCTGCTCAGCGCCACCGTTGCCGAGGTGCTGCGCCTGCGGCCCGTCGTGCCCCTGGCCCTGCCGCACTGCACCACGCGGCCCAGCAGGTGACTCTCCTAAGAGCTGGGCACACGGGGGA-----CCAAAGGGTGGGGGATCCTGGTGGGCCTCTGACTCCACCTTCCTCTCAGTATCTCGGGCTACGACATCCCCGAGGGCATGGTTGTCATACCCAACCTGCAAGGCGCCCACTTAGACGAGACGGTCTGGGAGCGGCCACAGGAGTTCCGGCCCGGTGCGTGGTGGCAGGGGAGGGGCGGTGGCTGCGGCACAAGGGCTGGGGGCGGCGGAGGCCAGTCCCCACCGCTACTGGACCCTGGTTC-------TATCCTCCTGCCCGCAGATCGCTTCCTGGTCCCCGGCGCCAGCCCCAGAGTGCTGGCCTTCGGCTGCGGGGCGCGTGTGTGCCTGGGGGAGCCGCTGGCACGCCTTGAGCTCCTGGTGGTGCTGGCGCAGCTGCTCCGGGCCTTCACGCTGATGCCCGCTGCGGGCACCCTGCCCTCTCTGCGACCCCGGGCCCGCTGCGGCGTCAACCTCAGCATGCAGCCTTTCCAGGTGCAGCTGCAGCCCCGGGGGGCAGGAGTCCTGGGACGTGGCCAGCACCCATGACAGG-CAGGACACACGACGGCTGTGTGCTTCAGTTTCTCCTTTTATTTCTCCCGTACAAACCCCGTCCCTCCCCCCTGTAAACATGGTGCTGTGAGATCGCAGATGGAGAAGGCTCCCTCCTCCGGTGGCTGGATAGTGAGGGTGGCCCCTGGCTCTTCTCTCAGCGCGACCCCTCAGTGCTCGGCAGTCATACTGGGGCGCCGGAGATGTGAGCTGTGG-TCAGCCTCCCTGGGCTGCTGGGGGCCGGTAGCTTCTTGGTCTGAGCTTCATTTCCGTGAAGGGCACAGAGAACTCGAAGCCCTTCCAGTAGTACCAGCTCACCCCCTGGGAAAGGA-TTGTTGAGACAGAGTCAGAGCCAGACAGACGTCCCATCTGCTCCCCAGCCTACACCCTGCACCCCGGCATCTGGGGAGATGGTTCCCAGAAATCAATCACCCTCCCC-CCGCACCCACTTCATGATCCTCAACTGCAAAGGCCGGAGGCTTAGTC-TAAGCTGgccctttacatccaataaatcgtgctcatgtctccctcgagatgacctggtgagattagcattattgtttcatttcacagatgacagcccaaggcgccaagcggctctgtcgctcatcccgccaccccgcag--------------caggctgagccc---------------tgagccac-tcccagCCCCTCACCTGGTGGTCCACTGTACTTCCGTAGAGCCCGTTGAGGTTGGCGTAGTGGCAGTTCCTGTACCACCAGGCCCCGCGGTATGACACCGCGCAGGAGATGAGCAGGTTGTTGGGGTCGCGATCACGGGCGGAAAAGACACTGCCACTATGGTAGCTCATGGAGTCCCCTGGACCGGT--GTGAAAGGGGCAGTGAGGGCCTCCCCTCCCCTGCCCCACTGTCCACGGGCCCCAGGTCCACCCTGACCTGCTGTGCCGTGGTAGCCGTCCAGATGAAGGCGGTAGTACTCCGCAGCTGAGTCTACTCGGAAGGAGTCATACTGTGCGAACACGGCCTCGTCCCCAGCCCGCAGGTCCACACGCATGGAGTAGTCGCCCGCTTTTGTCAGGCTGTGCAGGGCCTCGTTGCCTGGGGGTAAGG-AGGTGCTCTCACCAGAGTCCCCCATCCACCGGCCACCGGCCCTTCCCGGCCCCGCCCCTG---CCCCTGTCCCTGCGAGGCACTGACCCAACCAGAACTCCCCAGAGATGTTGCCGAAGCCGTGGGCGTAGTCCTCCCAGTCCCTCCAAAAGTCTGTCTGTCCGTCCATGCGGCGCTGGAACACCTGGCAAGCAGGGGGAGCCACCATCAGCCAC-GGCTCCGGGCACAGCAGCCC-GTGCCCCGCGCGGACCCTTGGGCGTTCTGTCCGCCACCCACCAGCCAGCCGCCCCCGTCGGTCTCCATGTCACAAAACACATTGAGGGGCCGCTCGCGGTTGCCATTGAGGAAGACGGTGGTGGTCCTGGAGGTGCCGGCTCCGTTCTGCATCTCTTCCCCGCAGTCCCGAGGGAAGGGGATTCGAAGTCCACCTGGGGAGAGGAGAATGACGGACCGGTCCTGTCCCCGCGCCCGGCGCCCTG-CTGCCCGCTCGGCCCCCCGCCTTAGGTCCCAGCG-CCAAATACCAGTGGTGAAGGAGGTGGACACCGGCGGCGTGAGGCTCTCGCCCCACACAGCCCGGAGCCACACGCTGTAGGGGGTGGAGGGAAAGAGGCCCAGAAGCTGGTGAGAAGTGGCCCCGCCTGGGAGCACGACCTCCTGTGG-ATAGATGAGGAGCAGGTCAGGGCCGGGCAGGG----GACCCACTGGGGGAGGTGGGGGACGGGCAGCGTCTCCTGGAACC-----GGCGGGGCTGGCCAGTGAGGGAGAGAGGAGCACCTGTGTCTGTCCACCAAGGGCGTTGAAACTGAGCAGGTAGCTAGTCGGCGGGACTTGGGGCTCAGTCCAAGTGAGCAGGGCCATGCGGGGGGTTACTTCCTTGGCCTCCAAGTCCTGGGGGGCTTCCAGCCCTGggaggggaggtgggaagagaagatggagatgcagatggagatggagatagagatggagatggagatagagatgACCTCCCCTGCC-------CCTGTGGCACACACCACCCAGGCCGTACCTGTGGTGAAGGTGATGCTGGCTGGGGAGGTGAGGTTGGGCCCCCGGAGACCACGCACAGTCGCTGTGTAGTTGGTGTGGAGCCTCAGGCCCCCCAGAGGGTACTCCACCGCGCTGCCAGGGGCCGAGGCCTGCAGTGGGGGGTCTGGAGGTGGGGTGAG---CATCAGCCTCTGCCCCCTCGGTGCCCTGCCAGAG----------CCTCTG---TCCCCTCCCTGACCAAGTCCCCTCTGGAGGCCTCAGCCCAGCTCACCCCCTGGGGCTGTGACACGGATGTTATATGTGTCCACGGGGGCCTGAGGAGGCTTCCAGTGCAGCAGAGCTGATCCCTCCGTCAAGTTCAGTGCACGGAGCTGGGTGGGGCCATCAGGAACTGGGAGAAGGGAGGAGGCTCAGAGCTGTCCCCGCTCCCCTCTCCACGCCTCACCTCCCCAAGCTCTACGGGCCTCCTGTCCACAGTCGAATCCTCTCACGCCTCCTT-----CCCCCTCATCCTGTCGGGGACCTAGCCCATCTCACCTGTGGTGAGGTAGCCTGTGAGAGGCTCACTCTCCTCAAAGCCACGGACAGAGACCACGGTCACCTCATAGTGAGAGCCTGGCATCAGCCCCTGGAGTTTCTGGGTCCGGGCTTGGCCATCCACCTGCACACTCTGTGGCTCCCCTGAAAACACACAGGCTTGGGAGTTTGCCCAGGGAAGCAGGCAAGAGCCACAGGGTGAGCAGACTGCAGGGGGCGGGAGGGCAAAGGGGGGGCAA------------AAGGGGGTCACCTCCATCTGCCAGCTGGTAGGAAACTTTGAAACTGTCCACTCTGGATGGTGGAGGCATCCAGCTGACCTGGGCCGATGTTTCCCTGATTTCCCTGAACTGAAGGTCCCGGGGGCTTTCCAGAACTGAGGGGAGAGGTGTGCCGAGGAATGTCAGTGAGGGTGCC--GGGCAGGGAGGCTCCTGCCTCGGGATCCCCTGCCCTGCTCCTTCCCAGGGCCCCAGTGGCTGCACACCTGCTCACCACCAGCCCTTTCCTCCAGACCTCAGAGA-GGAAG--ACTCTGGAGATTCCCCTCAGCCCCACCACACAC-----CAACCTCCCCTCTGGCGGAGGCACTAGGTCCCGCCCCACAAAGTACAAAGACCTCTCACATCAGGGCAGCACACGAATGTGCCCACTGTGGGGCCTTACCTGGGCTGAGGGTACGGGCTGTGCCCTGGATGCTGTCGGCCTTATGGGGCCCACGCAGCCCATACAATGTAAGGCTGTACAGGGTCCCCGGATGCAGGTCCCGGAGCACGGCTGAGCGCTGCGTCCCTGGCACCGTCAACTCCCGCTGCAGCAGGGGACGTGAGTGGGGCTCTAGAGTGCTTGGTGATGGGACCCCAAAACGGAGCAGGAAGGAGTCAAAGGCCTCGGATGGGGCCTCCCAGTTGAGCCGCAGCGAACTGGTGGTCACATCAGTCACTGACAGCTGGGACAGGCGGGGCCCTGGCTCCCCTGGGGTCAGACCGGCAGGAGCAGGCCCTGCACAGAGTGGGTG--------------GGAGACAAAAGCACACCACGTTGGTGGGCTGGAGCAGGTCTCTCCCACCACCCCACCCTGGCCCCAAGTTTCTC-ATATGTGAGGTGG--------------TGGAGCTCATGCGAGGCAGGTACTCAGCTGGGGCCCATGTGAGCATGTGTGTGGAGCACCACAGGCGGCTGCTGCACCCCTTCCTCC---------CTCCACAC---TGCCCTCCAGTCACTGCCTCTGGGCACCCCCTTTAGCCCTTCC-AGTCCCAGACCTGAGGTGGGTGAGGCCTAGATACGGGGCCCTTGCCCGGCGGTACCTGTGGTGCCCTCAGCTGAGATAGGCCCCAGGCGCTTCCCTCCATGGAGGCCATAGAGGAAGAACTGGTAGGAGGTGCTGGGCTCCAGGCCTGACACTAGGACCTTGTTCTGGTTGCCACCCACGAGCAAGGCCTGGGGCTGCCCATCTGTGTCCTGATACTGGACCACGAAAGAGTCAAAGGGGCCCTGGGCCACATTCCACAACAGGTGCAGAGAGTCTGGGGTTATGTCGCTCACTGCCAGTGTCCTTAGGTGGGGCCCTTCAGGGAGCTCAGGGGCCTCTGTGGCGGGGCTCCAGGGGGCTGGTGTGTCCACTTCCGGGGCTGTGTGGGAGAAGCCCAGGGGAGAAGCTGAGCAGGGGTGACCAAG a score=13715 s hg19.chr6_ssto_hap7 3313107 604 + 4928567 CTGCGAGCTCCCGCGCTGT--CTGAGTCAGGTGCTCGCTTCCCCCT-TCCACACCCCGGTGTCCTGCCGAGCCCACCTCGAGATAT---CACAG---GCTCTGGCCCCACCCATGCCGGGATACATTCACT------------------GAGCTTGAGGAGTGTGGTGCTCCCTTCTGAGAGA------------AGCTGAGGGTGGAACTGGCTGGTTGAGGTGACTGGCAAATCCCACCAGCCGTGCCG-----TGG------TCAGGCCTGTCTGAGGTGGGCATCAGCGAGCTCTGGAAGAGGAGCCTGTACCACAAATGCAGCCACTGCTGTTGGTTTCTGTGTCCC-CGCTCATTTTGTTTTCCAGTGATGTTCCTCTTAAG--AAAATGCTCCTGACTCATCCACGGCAGGGAGGTTTGCCACTATCTGGACAAGGCCACCCTTCGGGGAGGCGACAGCAGCCCCAGC-GAGTAATGAGGAGCAGC-GGCAGTGACGGGGCAGAGTCGGGGCTGGGAGATTAGAGAGCCCCTCCCAGGGCCTTTCCCT--------CCCGCCTGGCCTGGCTCCTGCTC----TGGACTCCTT-GATGGATGTTGAAGCCCACAGGGCTGCAGACTCCTCCTCCTTCCTGGGCACAGGCCAGGTCACC--CCACTCC s canFam2.chr12 4460309 649 + 75515492 CCGTGAGCACCAGCACTGTGGCCCCATCAGATACTTGCTTCTCCTTCTCCTCCTCCATGTATTCTGGGTGTCTCATCTTGAGGTGCGTGCACAGCCTGCTCCCTCCCCA-CCATGTCTGGGTGCCTATGCTCCTGGCCCAAGGCAGGAAGAGCTGGGCGGGGCATGTGGTCCAGGGCGGTGGAGTGGGGGTGCATAGCTGAGGACGGAGCTGGCTGGTAAACTGGAAGGGCAGATCGCACCAACCAGGTCGGCCGATGGGCCCCATCCTGCTGACCTCAGCTGGGTGTTAAT-AACTC-----------CCAGCTCCATCACTGTAGCCACTTC---TGGTTGCTACGCCCCTCACCTATTTTCTTTTCCAGTTATTTTCCACTTGGGAAAAAATGCTCCTGACTCATCCACAGGAGGG-GGTTTGCCCCTATCTGG-CAAGGCTG-CCTGCGGGGAGGTAAGAGCTGCCTCAGTAGAGTGA-GGGGAACAGCTGGCAGTG-CTGGGCAGCATGGGGGCTGGGAGA-CAGGGGACCACTGCCAGGGCCTTTCCTTGTGCCTGCCTTGGCTGCCCTGGCTCCTGCTTTGGATGGACTCCTCGGGTTACCATCGGAGCTGGCCCCACTGCA---CCTCCCTTCCTCCCAGGCCCACTCATGCTCACCTGTCACTCC a score=3653 s hg19.chr6_ssto_hap7 3313756 50 + 4928567 CAAGTACTTTGTTAAAGGTATCCCATCTGCAGCTCAAGCCTGCAGCCCCT s canFam2.chr12 4434694 50 + 75515492 CAAATATTTTGTTAAAGGTATTCTATCTGCAGCTCAAGTCCTCAGCCCTT a score=2670 s hg19.chr6_ssto_hap7 3313844 29 + 4928567 ACCTTTCCCCTCTCCTGTGCCACTTCTCC s canFam2.chr12 4434785 29 + 75515492 GCCTTTCCCCTCTCCTGTGCCACTTCTCC a score=12224 s hg19.chr6_ssto_hap7 3313876 149 + 4928567 AGGGCGCCAGGCTGTCCTTGGCATGGTCCGGAAGGCAAAGTACCGGGAGCTGCTCCTATCAGAGCTCCTGGGCCGGCGGGTGCCTGTCGTGGTGCGGCTTGGCCTCACCTACCATGTGCACGACCTCATTGGGGCCCAGCTAGTGGACT s canFam2.chr36 3582090 149 - 33840356 AGGGCGCCAGGCTGTCCTCAGCATGGTCCGGAAGGCCAAGTACCAAGAGCTACTCCTATCAGAGCTTTTGGGCCGGCGGGCACCTGCCTCGGTGCGACTTGGCCTCACTTACCACGTGCACGACCTCATTGGGGCCCAGCTAGTGGACT a score=3384 s hg19.chr6_ssto_hap7 3314025 63 + 4928567 GGTGAGTCTTTCCCT-GGCCTCTGGCAGATTATGGAGCAATGACCCAAAGTGGGATTTCCTCCC s canFam2.chr12 4434963 64 + 75515492 GGTGAGTCTCGCCCTCAGCCTCTAGCAGATGATAAGGCAGTGAACCAAGGTTGGACTCCCTCCT a score=77764 s hg19.chr6_ssto_hap7 3314144 1643 + 4928567 GGGAGCACCCCTTCCCAAGTTCTAAGTTCTCCTCACAGCTTGAGCCTAGGCGTCTGGCTCCAGCCTTGTCTTTCT-----CCTGCACAGCATCTCTACCACTTCAGGAACCCTCCTCCGCCTGCCAGAGACATGAAGATTCTGCTCATCATTGCTCAGCTCCTCAGAGTGGGCCGGGAGGGGACTAGAAGAGCTGCATGATGGTGGCTGAGACAGGGTCACCTTGGGAAGGCTTGGGAGCCAGGATGAGTGTCGGGCTCTCGTGTGTGCAAAAGGTCAGATGTGACTGCTGCTGTTTGCCTGGTTTCTGACCCAGTGGTGGGGTTTGAGCAATGCTTCTCTGCCCTTCCATGGAAAGTGGAACCAGAAATGGTGCCAAGGCTGTGGCTGTTCCCTTTCGTGTAAAATGGTGCTGTTATTACTCTGTCTTGAAATAGGAAGGTGGGATTTCTGGGGAGGCTGGTGAAGGAGGGCAGGGTTCTTTTCTCTACGTGTCATGTTAAAATTGCCAAATAAAGTACCTCTGCCTGTGATATTTTCTGGATGTCCTTTATTTACTGTGACGTGTGTTTGGGTGCCTTGTTTAGGGGTAGAGGTGAAGTC-----------TGAGCTTTGCCTCATTC-----AGAGAGGAAAGGGGTCAGGGGTTCACTCTGACGTTCAGGCCATTCTCCCTGTGGAGTGGTGAGGGTGTACCTAATCTCCTAAACCACGGAATTTCTGTTAGGGCCTAAA-AAAGCAAAAGCCTAGTATAGTTCAATTTGTGTTGGAATGAAAGTAAGAGACAAGTGTCTTAGAAGCCTGTCATTGTTTTGTGAGGGCCTTTAA--------------ATATCC-----TGTACTCGTGGGCCATGTTGGGCCCTTGTACGCCCAGGTATACATGAGCTTGTGTGCACCTATACCCTGATACAGATATACCTGGTAGGGGGAGGTGCTCAGG-CACTGGAATGAGAGGAGTTAACGGGGAAGGACAGGGTTATTTCTGGGCCAAGATT--CAGAGTTTCCCATGGACACCCAGGTGTCCGGGGTGCCCCCAC------------------AACTCTGGGCCTGAGGCCAGTTGCACTTCTTGGCTGTCACGTGGTTTCCCAGCTTAGCTGGGCTGGGGGAGGAGCAAGGTCCAGAGTCAACTCTGCCCCGAGGCCTAGCTTGGCCAGAAGGTAGCAGACAGACAGACGGATCTAACCTCTCTTGGATCCTCCAGCCATGAGGCTGCTCTGGGGGCTGATCTGGGCATCCAGCTTCTTCACCTTATCTCTGCAGAAGCCCAGGTCCTGGAGGCGGGATGCTGGGTGCTTGGATTGGGGCAGGGCTGGCATCGGGACCCGATTCAGGAGTGAGGGA-------GAGCA----GGGGTGGAGGTGTCAGAGCGAAGTCTGACTGCTGATCCTGTCTGTTCTCCCCAGGTTGCTCTTGTTCTCTCCTTCTGTGGTTCATCTGGGGGTCCCCCTATCGGTGGGGGTGCAGCTCCAGGATGTGCCCCGAGGACAGGTAGTCAAAGGATCAGTGTTCCTGAGAAACCCATCTCGTAATAATGTCCCCTGCTCCCCAAAGGTGGACTTCACCCTTAGCTCAGAAAGAGACTTCGCACTCCTCAGTCTCCAGGTAACCAGACCCCATGCCCTCCTGCTGCTTGTGGGGGCCTCCTGCCCTGTTCCCATCTG s canFam2.chr12 4435027 1657 + 75515492 GGGACTATCCCAGGCCAAGCTCTGAGTTTTACCCAGACTTTTGGCCTAGGTATCTGGCTCCAGCCTCGTCTTTTCTTTTGCTTGCACAGTGTCTCCACCACTTCTGGAACTCTCCTCCGCCTGCCGGAGACGTGAGGATTCTGCTCATCATTGCATATCTCTGCAGAGTGGGTTGAGAGGGGTCCAGGAGTA-TGTCCAGTGGTGGATGAGATAGGGTCACCTTGGGAAGACGTAGGAGCCCGGATGAGTGTTGGGCTTGCATCTGCATAAAGGGTCAGACGTGATTGCTGCTGTTTACCTGGGCTCTGACCCAGTGGTGGGGTTTGGGCAATGCTTCTCTGCCCTTCTGTGGGAC-TGGAGCCACAAACCGTGCCAAGGCCATGGCTCTTGCCTTTCACACAGCAAAGTACTGCTGTCGCTCT----TGGGATAGGAAGACGGGATTTCCGGGAAGGCTGGTGAGGGAGGGCAGAGTTCTTTCTT--AAATGTTAAGATCAAGCTGCCAAATAAAGTACAAAC-CATGTGCAATTTCTTGGATGTCTTTTGTTGGATGTAATATGTATCTGGACACCTGGTTTGGGGGCAGAGTTAAAGCCAACCTTGAGCCTGAGCTTTGCCTCATTGTTCCGAGAGAGAAAAGGACACTGGGGT-----------------CCATTCTCCCTGCAGGGTAGTAAGGGTATGCCCTGTGTCCTCAGCCATGGAATTTGTGTTGGGGCCTACACAGAGCGAAGGCCTGGTGTCGTTCAGGTTTTGTGGGGGTTGTAGTTAGAGACAAGTGTCTGGTA-------TTTTGTTTTGTTAGGATTTTTACCAAGGAAGCCATGTATCTCCAACCATGTACT---GAGCCACACTGGACTCCT--ACGCCCA----TGCGTGCGTATGTGTATACCTGTACACC----CAGGTACACCCAATATAGCG-GCTGCCCAGGGCACTGGGATGAGAGG-GTTAACGTGGAAGGACAGGACT----CGGAGCCATGATTTCCTCAGATGCCTTCAGAGACCCAGGTGTCGGGGGTTGTCCCTCCTCCCCCTGACCCTGCTAAACACCGGGCTTGGGGCCAGTTGCATTTCTTGCCTGTCACATGGTTTCCCAGCTTAGCGGGGCCAGGGGAGGAGCAAGGTCCAGAGTCAAATCTGCTCAGAGCCCGGGCTTGACCAGAGAGGAGCAGGCAGACAGACTGGTCTGATCCCTCTTGGGTCCTCCAGCCATGAGGCTCCTCTGGGGACTGGCCTGGATGGCCAGTTTCTTTGCCCTATCCCTGCAGAAGCCCAGGTCGGGAAGGAAGGACACCAG-TGCTTG-AGGAGGACAGGGCTGGTGGCGGGA----GAGCAGGCGTAGGGGACCTAACTGAGGACGGGGGGACAGAGGGGCCTGGGGGATG-CTGAACACCAAACCTTCCTGCTCTCCCTAGGTTGCTCCTGTTTTCGCCTTCTGTGGTTCACCTGGGGGTCCCCCTGTCAGTGGGGGTGCAGCTCCAGGATGTTCCCCGGGGACAGGTGGTGGCAGGATCAGTGTTTCTGAGAAACCCATCCAACCTGAATGCCCTCTGCTCCACAAAGGCTGACTTTACCCTCAGCTCAGAAAAAGACTTCGTGCTCCTTAGCCTCCAGGTAACTAGCCTCCACTCCCCTCTATGGCTTCTTAGCAACTCTCATCCTGCTCCCCTCTG a score=35812 s hg19.chr6_ssto_hap7 3315851 752 + 4928567 CCTTCCACGTTTCTCCCTTGGTCTCTGTCCTTTTTGGTCAGCTGTCTCTTGCTCTGTGAcccgctccctctccctctccctctccTGACAGGTGCCCTTGAAAGATGCGAAGAGCTGTGGCCTCCATCAACTCCTCAGAGGCCCTGAGGTCCAGCTGGTGGCCCATTCGCCATGGCTAAAGGACTCTCTGTCCAGAACGACAAACATCCAGGGTATCAACCTGCTCTTCTCCTCTCGCCGGGGGCACCTCTTTTTGCAGACGGACCAGCCCATTTACAACCCTGGCCAGCGGGGTGAGTCTCAGCCCCAGGGCCTCAACCTTTAACCCCCTCCGAGCCCTCTCAGGATGAGTTTGGTGCCCCCTAAGTGAGATAACCTGAAAGAAAGTGCCACACAGAAGGGGTGCTTAGGAAACATTTGTC-CCCTGCTCCCTCT-----------GTGGAGTTTGACCCACCCTCCCCTTGCACATGGACCCCTGCTCACCTCTCTCCTCCTCCACTCCCAGTTCGGTACCGGGTCTTTGCTCTGGATCAGAAGATGCGCCCGAGCACTGACACCATCACAGTCATGGTGGAGGTGAGTCCCCGACCTCTGGCCTTCCTGATCCTGGCCACTGATGTGACCTCCTGCCTGTGAGCACTT---CTCCCCTTGCAGAACTCTCACGGCCTCCGCGTGCGGAAGAAGGAGGTGTACATGCCCTCGTCCATCTTCCAGGATGACTTTGTGATCCCAGACATCTCAGAGTGAGCGCTCCC s canFam2.chr12 4436736 737 + 75515492 CCTTTCCTGTTTCTGTCTCCATCTCTGACTTTTTCCTTCTGCCCTGTCTC------TGACCTGCTCCCTCTCCCTATCAC------GAAAGATCTCCCCAGAAGAAGCAGAGAACTGTGGCCTCTACCGCCTCCTCAGTGGCCCCGAGGTCCAGCTGGTGGCCCAGTCAGCATGGCTGAAGAACTTTCTGTCCAGAAAGATAGATGTTCAGGGCGTCAACCTTCTTTTCTCCTCTCGCCGAGGGCACCTCTTTCTGCAGACTGACCAGCCTGTTTATAACCCTGGCCAGCGGGGTGAG--TCAAGCCCTGGGCCTCTGCCTCTGG--CTCTCCCAGCCTGCCCAGGGCATGTTTGGCA-CCTGTAAGTAAG--AGCCT----GAATGTGCTACACAGGAAGGCTGCTTGGCAAATATTTGTTGTCCTCCTCTCACTGGCTGGGAGCAGTGAGGGCTGA--GGCCCACCCTTTGCCAATGGATTCCTGCTCACCTCCTGC--CCTTCTCTCCCAGTTCGATATCGGATCTTCGCTCTGGATCAAAAGATGCGCCCATCCACTGACACCCTGACGGTCACAGTAGAGGTGAGTTCCTGACTTCTGACCTTGACCAGGAGGGCTGCTGATCTGCCCTCCCACCCGTGACCACTTCTACTCCCACCGCAGAACTCCCATGGCCTCCGTGTGCGAAAGAGGGAAGTGCGCGGTTTC---TCCATCTTCCAGGATGACTTCATGATTCCCGATATCTCAGAGTGAGTGCATCC a score=46610 s hg19.chr6_ssto_hap7 3316858 1057 + 4928567 AACAGCAGCACCCAG-TTTGAGGTGAAGAAATATGGTGAGAGCTGGAAACTGGAGGGACAGGCAGCTGCTTTCCTGAAGGAAATAAGGGTGGAAGGAGAGGTACTGGGAGCAGCTCAGGGCAGGGAGATATGGGTGCCACAGCCCTGAGCAGAGGGGAGTCTTTGAG-----------CTGGAGTCTGACCTGCCTATCCCTTCACCCTGGGTCAGTCCTTCCCAACTTTGAGGTGAAGATCACCCCTGGAAAGCCCTACATCCTGACGGTGCCAGGCCATCTTGATGAAATGCAGTTAGACATCCAGGCCAGGTAATACCTCCCTCCCCACCTCTGCCCACCAGCACCGGGTCCTGCTCCCTACTCAGTATGAATGGGCT-------CCTGCTTCCC--TGCCCTCGGGCCATTATTCCCCCCAGCC--------------------CTTGGCCCACCCTCTTC------TCTCTGCCACGACAGGTACATCTATGGGAAGCCAGTGCAGGGGGTGGCATATGTGCGCTTTGGGCTCCTAGATGAGGATGGTAAGAAGACTTTCTTTCGGGGGCTGGAGAGTCAGACCAAGGTAGGAAGGAGAATAGGGGCTG---------------GGGAGGGGAAG---GGGCAAGGGAGGTG-----------------------------------------------AGGTGGGAGACTCAGTCTCACCCTATGTCCTGTTTCTTTCTATGCCCCAGCTGGTGAATGGACAGAGCCACATTTCCCTCTCAAAGGCAGAGTTCCAGGACGCCCTGGAGAAGCTGAATATGGGCATTACTGACCTCCAGGGGCTGCGCCTCTACGTTGCTGCAGCCATCATTGAGTATCCAGGTGGGTGACTTTCCCTTATTGTAACCCCAGACCCTTGCCTCTGACCTCTGAGCTAACCCTCTGTCCTCCAGCACCAACACCACCCCA----CTTCTCACATCT--------CATCTCAGACTCAAAACCAGGAAACACCCAGGAGACCTGGTTTCTCTCCAACTCTGTCTCTGTGA---CTCGG---------CCCTTTTCCCTGGCTGAGTTTATTTATTTCTTTGCTCGTTCTGCTCATTCCT-----TCACTCCTCCAGTGGACATGTGTTGTTCAAT-----------GCCCCGTGCTAGGCCTCAGCATGCACAGAC s canFam2.chr12 4438139 1192 + 75515492 AACAGCAGCACCCAGGTTTCCGTCGAGGAAATATGGTGAGAGCTGGAGACGCGAGAGA-AATTTTCTCCTTTCCTCAAGGAGAAACGGAGAGAAGGGGAGGT-CTGGGGACAGGGCAGGGCAGGGAGGTGTGGGTGCCATAGCCCTGAAGGGAGGGAAGTTTTCAGAGGGTCCTTTCACTGGAGTCTGACCTGCC-ACCCCTTCACCCTGAGTCAGTCCTTCCCAACTTCGAGGTGAAGATTGTTCCTGGAAAGCCCTACATCCTGGCAGTGCCTGGCTTTCTTGATGAGATCCAATTAGACGTCCAGGCCAGGTAACTCTCCCATCTCCTGCGTGGGGCAC----GCAGGGT-----TCCCCATCAAGTCTGAAGGAGCTGTGAAGCCCTGGTTCCTCTTGCCCTAGTGCCACCCCCACCCCCACCCTGAGACATGGGTGTTATTTCCTAAACTAACCCTCTTCCCACTCTCTCTGCGGCGGCAGGTACATCTATGGGAAGCCGGTGCAAGGGGTAGCATATGTGCGCTTTGGGCTCCTGAATGAGAATGGTGATAAGACTTTCCTTCGGGGGCTGGAGAGTCAGACTAAGGTAGGAAGGAGGGTGTGGGGAGTGTGGGAGGGTggaggggaggggaggagagggaaagggaagggGGTCTGGGGGGGTGGGCAGGAGGGTCCTGCCCTCTGTGGGGAAGGGCAGGAGGGAGAC-AAATCTCACCCTAGGCCCTGTTTTCTTCTATGCCCCAGCTGGTGGATGGCCAGTGCCACATTTCCCTCTCAAAGGCTGAGGTTCGAGGTGCCCTGGAGAAGCTTAACGTTAATGCTGCTGACCTCCCTGGGCTGCACCTCTATGTTGCAGCTGCCATCATTGAGTCTCCAGGTGAGGGGCTT-CCCTTATTGTAACCCCTGCCCCCAACCCCTGACCTTCGAGCTGACCCTCTGTTCTCCAGCATCGACATGATTCCCTGCTCTTCTTACCCTTGTGTCTTGTGTCTTGTGCCCAAAGCCAGAAAAGACCCAGGAGACT--GTCTCTCCCCAACTGTGTTTCTGGGTGGTTTCAGGAGAAGGTACTCCTGCTTCCATCTCAGTTTTCTTTTTCCCTTCACCCCACCCCCCACCCCCAACCCCcgtccatctggcagacacgttacataccatctgtgtgctgggtcctgtg-tgggcctcagcaaacagagat a score=415315 s hg19.chr6_ssto_hap7 3324284 8929 + 4928567 GAATACGG--CAGCCTGTGCCCTGGG-AGCTCACTGTCTTGTGGGAGGGAACCACTCAAGCCAC-TCCCCACTTGTCCTCCTGTCCCTCTCTTCTTGGGCTCT--GTCCCCCACCTCTCTCTGTCCTTTGTCTTGCAGGTGGGGAGATGGAGGAGGCAGAGCTCACATCCTGGTATTTTGTGTCATCTCCCTTCTCCTTGGATCTTAGCAAGACCAAGCGACACCTTGTGCCTGGGGCCCCCTTCCTGCTGCAGGTTTCTTCCAGAGGGGAAGGATGAGTAGGGAGGATGTGGTAGTTAGGAGGGCTCAGGGTCTGAC----CACTCTCTTTTGCCTG-CCCTCCTTTACCTGCCTAGGCCTTGGTCCGTGAGATGTCAGGCTCCCCAGCTTCTGGCATTCCTGTCAAAGTTTCTGCCACGGTGTCTTCTCCTGGGTCTGTTCCTGAAGTCCAGGACATTCAGCAAAACACAGACGGGAGCGGCCAAGTCAGCATTCCAATAATTATCCCTCAGACCATCTCAGAGCTGCAGCTCTCAGTAGGACTCCTCGGACCCCTGGGAGATGGTGGGGGAAGGGGAGGAGGGTGAGCTGGGGTC-------CCAAGG-------------ATCCATGGCCTGA-CTTGGGGGGAAGGTGGGGTACTTGGCTCTGAGCTACT-ACCCTATTCGCACC-TGACCCCCTCTCCAGGTATCTGCAGGCTCCCCACATCCAGCGATAGCCAGGCTCACTGTGGCAGCCCCACCTTCAGGAGGCCCCGGGTTTCTGTCTATTGAGCGGCCGGATTCTCGACCTCCTCGTGTTGGGGACACTCTGAACCTGAACTTGCGAGCCGTGGG---CAGTGGGGCCACCTTTTCTCATTACTACTACATGGTGTGCATGAGCTGGGGAGTCACGGAGGGCTGGGGTGCAGGGA-------------AGAGCC-CTCTGGGTGGGGCTGGGGGGGTTCAAGG-CTGAGGCTGTCCC----ATGAAGAGGCAACCACTCTTGTCCCTCCCATTCTTGGCCCAGATCCTATCCCGAGGGCAGATCGTGTTCATGAATCGAGAGCCCAAGAGGACCCTGACCTCGGTCTCGGTGTTTGTGGACCATCACCTGGCACCCTCCTTCTACTTTGTGGCCTTCTACTACCATGGAGACCACCCAGTGGCCAACTCCCTGCGAGTGGATGTCCAGGCTGGGGCCTGCGAGGGCAAGGTGACCGGGGTCAGGAGAGATGGCACTTGTGCCGAGGGGGTTGAGGAC------AGGGTGATTGCCAACAGGGCATGGATTTAGCTTGGGGGCAGTGAGGATAC-CGGGACTGAAGGAAGCTCTCCC-ACTCTGACCGCCCCCACCTGCCGCCCCTGCCAGCTGGAGCTCAGCGTGGACGGTGCCAAGCAGTACCGGAACGGGGAGTCCGTGAAGCTCCACTTAGAAACCGACTCCCTAGCCCTGGTGGCGCTGGGAGCCTTGGACACAGCTCTGTATGCTGCAGGCAGCAAGTCCCACAAGCCCCTCAACATGGGCAAGGTTTGTCCAGACCC----TCTCCACAGCTCTCTCACCCCTCCATGGCTCATCCCCCTGCTTCCCTGAGCCTTGGGCGCAGCCCCTGGATCCCACTGAGGCTCCCCACAGTCTCTTCCCCA---CTTGGC-CCTGTGGTCTCCATCTCCTGG--CTCTGTAT-CCTTTCCTATCCCCCCATGTGCTGCCCTCTCACCTGT-GCCGAGTGCTCAGTCCTGCCCCTCAGCCACACTTGGCTCCTAGCATTCCTGCCTTT-CTTGC-AGGTCTTTGAAGCTATGAACAGCTATGACCTCGGCTGTGGTCCTGGGGGTGGGGACAGTGCCCTTCAGGTGTTCCAGGCAGCGGGCCTGGCCTTTTCTGATGGAGACCAGTGGACCTTATCCAGAAAGAGTGAGAACAgagaaggaaggggagt-gggtggcgggaagataaggaaggaggaagggcctgaggggaccagctggaagagtccgggcaggaagggctgggcaggggaagggg---aggagggga----ggagGCCGAGTGCCTGACGGCTGGACTGCAGCCTTTCTCTCTACCAGGACTAAGCTGTCCCAAGGAG---AAGACAACCCGGAAAAAGAGAAACGTGAACTTCCAAAAGGCGATTAATGAGAAATGTGAGTTGCGGGTGCCTAGGCAGTAGCTTGGGCTCTCCACCTGGGATCCGGGTTGGGG------GTCTGCCTCTCTGCCCCTCGGCTCCTTGCTGAACCC-ACGTGTGGTATTTGGGGCCAGAGATCCGAATTCCGGGATTACGAGTGGAAGGTGGGCAGCTCTCTCCAGCAGCCTCTCTTATGTTGCTGGTCTCAAGGG----------------------GTCGGGGCGGGTGCTGAGGTGTATGTCCTTTTTGTCCTCTCATGCTCACCCCCACCTGGCCCTGCAGTGGGTCAGTATGCTTCCCCGACAGCCAAGCGCTGCTGCCAGGATGGGGTGACACGTCTGCCCATGATGCGTTCCTGCGAGCAGCGGGCAGCCCGCGTGCAGCAGCCGGACTGCCGGGAGCCCTTCCTGTCCTGCTGCCAATTTGCTGAGAGTCTGCGCAAGAAGAGCAGGGACAAGGGCCAGGCGGGCCTCCAACGAGGTGAGGGGCTGGGTGGGGCTAGGGCACAGGT-GGCGGCGCT-TGGAAAGGCAGAACGGTCCCC-TCCTCACTCCCGTCCACCGTGGTCCCCCAGCCCTGGAGATCCTGCAGGAGGAGGACCTGATTGATGAGGATGACATTCCCGTGCGCAGCTTCTTCCCAGAGAACTGGCTCTGGAGAGTGGAAACAGTGGACCGCTTTCAAATGTGAGAGTGTGTGCCGG-CCCGGCCTTTTCTCTGTGCTGTGTCTCGGGGCCAGCC--GGGGTAGACGGGCCTTCTCTGCCTTTCCCTACACAGATTGACACTGTGGCTCCCCGACTCTCTGACCACGTGGGAGATCCATGGCCTGAGCCTGTCCAAAACCAAAGGTGATGTCACCCTGTCTGGGCCTCAGGTGACCCTGCTTCCATTTCCCTGTACCCCAGCTCCCTGTT---CCCTTTGCTCTTAGTGTAGGAAGAGGGTCCAGTGATCTGGGGAGGTCTGTGCCAGCGTGCAGCTGGCGTGGGCCAGAG----------GGCAGAGGCGGACTGAGA------CAGAGCTGGGTCACCCCCACCCCTCCCTCCTGTGGCCCTGAAGCTTTGATGGCCCCTCTAATCTCTGC---CCCTGTGCCCACGCTTCCTTTCCCTCAGGCCTATGTGTGGCCACCCCAGTCCAGCTCCGGGTGTTCCGCGAGTTCCACCTGCACCTCCGCCTGCCCATGTCTGTCCGCCGCTTTGAGCAGCTGGAGCTGCGGCCTGTCCTCTATAACTACCTGGATAAAAACCTGACTGTGAGGCCCCATGGGAGCCTGAGCATACAGGAGTTGGG--GGAGCCAGGGCCCAGTGAGGGGTGGGGAGGCTAACCGGGCCAGGACTCTGGCCATCCTCGTTTTCCTGCCCTCAGGTGAGCGTCCACGTGTCCCCAGTGGAGGGGCTGTGCCTGGCTGGGGGCGGAGGGCTGGCCCAGCAGGTGCTGGTGCCTGCGGGCTCTGCCCGGCCTGTTGCCTTCTCTGTGGTGCCCACGGCAGCCGCCGCTGTGTCTCTGAAGGTGGTGGCTCGAGGGTCCTTCGAATTCCCTGTGGGAGATGCGGTGTCCAAGGTTCTGCAGATTGAGGTGAATGGAGCACCCCTGAATATAAGTCCCCGGGCCCCCAG-------CTTTGTCCTC--------CACCCTCAGCACTCTCTCTGCTGGCCAGGCCAGGGGCCCAACACCCGAACCAATGCCTTGGTCTGTTCCCATCTTCTACAATTCTGATCCAACTCTGTCCCTGGAGTTGAAACTCAAAGTTCTGGGGGAGTCTGCGCTAGCAGGG-CAGGCTGTAGTCCTGTGTGACCTC--ACAACCATGTTTTCCCTGAGACAGAAGGAAGGGGCCATCCATAGAGAGGAGCTGGTCTATGAACTCAACCCCTTGGGTGAGTGACCCTCTACCTCCAGCCATTGGTTTCCTAAGTGGGTACAGGTGGTGGGGGATGTGGACAGCAGGACAGGCTGCCAACTTCCCCCATTTCCCCAGACCACCGAGGCCGGACCTTGGAAATACCTGGCAACTCTGATCCCAATATGATCCCTGATGGGGACTTTAACAGCTACGTCAGGGTTACAGGTGGGAGTGCCCTTTAGTCCCTTCCCAGTGGCCACCTTCGGATTCATGTGGGACCTGTGGATCCCTGCTTGGTCCCACTCCCCGTGAGCCTCTGACACAGAGTCCTCAGACCTCC------ACCCTCTCCC-------TCCCATGTAGCCTCAGATCCATTGGACACTTTAGGCTCTGAGGGGGCCTTGTCACCAGGAGGCGTGGCCTCCCTCTTGAGGCTTCCTCGAGGCTGTGGGGAGCAAACCATGATCTACTTGGCTCCGACACTGGCTGCTTCCCGCTACCTGGACAAGACAGAGCAGTGGAGCACACTGCCTCCCGAGACCAAGGACCACGCCGTGGATCTGATCCAGAAAGGTTCTGGGTGCAAGGGCAAGCAGGAGGGGGGCCAGGAAAGGACAGTTACTGGAAGATGGACAGCCCAGGAGGCTACAGAGGGAAAGAAAGGGGGCCCCTGATGAGGATGGGGAGCATGGCCTTGGGCTCAAACAGCAGAAGGGTGAGTGTCACCTGAGCGGCCACCTCTCCTCTCCAAGGCTACATGCGGATCCAGCAGTTTCGGAAGGCGGATGGTTCCTATGCGGCTTGGTTGTCACGGGGCAGCAGCACCTGGTGAGCTTGGGAGAGTGGTTCCAGGGTTCTGAGGGGGTCAGGGCTGGGGCAGGGGTGGGA--CAGAGCT-GGTATGATGGGAGGGTGGATAACCAGGCACCTGGGGGCGTGGGCATA--------ATGAGAAGCAAGTCCTTATCCCCAACCCTCCTTTCCTGCCCTCCAGGCTCACAGCCTTTGTGTTGAAGGTCCTGAGTTTGGCCCAGGAGCAGGTAGGAGGCTCGCCTGAGAAACTGCAGGAGACATCTAACTGGCTTCTGTCCCAGCAGCAGGCTGACGGCTCGTTCCAGGACCTCTCTCCAGTGATACATAGGAGCATGCAGGTGCGGGCATGCTGGGGCTGGCCCGAGAAGCGCCTGTCGGAGGACTCTCTTTG---------------CCCCTTCCCC-CTCCTGTTTGACATCTTTTCT--CCCCTT--ACTAGGGGGGTTTGGTGGGCAATGATGAGACTGTGGCACTCACAGCCTTTGTGACCATCGCCCTTCATCATGGGCTGGCCGTCTTCCAGGATGAGGGTGCAGAGCCATTGAAGCAGAGAGTGGTAAGTTCAGTGGCGTTTCTGCCCTCTGCTGGCCCCCAGCTCTCTCCCT----------------TTTTCCTCAGGAACCCAGGGGTCCAGGCCCAAGACCCTCCTCCC-GTTTTCTTCCAGGAAGCCTCCATCTCAAAGGCAAGCTCATTTTTGGGGGAGAAAGCAAGTGCTGGGCTCCTGGGTGCCCACGCAGCTGCCATCACGGCCTATGCCCTGACACTGACCAAGGCCCCTGCGGACCTGCGGGGTGTTGCCCACAACAACCTCATGGCAATGGCCCAGGAGACTGGAGGTGAGGGGTGAGGCGCTCCTGGCAGTGAGCCTGAGGCCCAGGGGACCTTAGGATCCCTGAGTGTGCCCAGAGGGAGAGGCTGGATGAAGACTCAGAGGAGGAATGAAGTTATAAGCAGGGGTGGGTTGGGGGAGACTCAGGAGAGCCCAGCAGGGGGTGGCTAAGGGCCAGGGGACCAGGCTCTTCTCCCTGCCTTCCTGTTTACTCGT-GGTCTCCCTTCACTTTCAGATAACCTGTACTGGGGCTCAGTCACTGGTTCTCAGAGCAATGCCGTGTCGCCCACCCCAGCTCCTCGCAACCCATCCGACCCCATGCCCCAGGCCCCAGCCCTGTGGATTGAAACCACAGCCTACGCCCTGCTGCACCTCCTGCTTCACGAGGGCAAAGCAGAGATGGCAGACCAGGCTGCGGCCTGGCTCACCCGTCAGGGCAGCTTCCAAGGGGGATTCCGCAGTACCCAAGTAGGGGCCGTCCCCGGGCTCTGGCGGGGGTGGGTAGTCCTCAGACCAAGGGCTTGCTTGAGTCCTGGCTCAACCTCCCTAGGACACGGTGATTGCCCTGGATGCCCTGTCTGCCTACTGGATTGCCTCCCACACCACTGAGGAGAGGGGTCTCAATGTGACTCTCAGCTCCACAGGCCGGAATGGGTTCAAGTCCCACGCGCTGCAGCTGAACAACCGCCAGATTCGCGGCCTGGAGGAGGAGCTGCAGGTGAACCACTCCCTGGTGAACCACTCCCTCGCCTGGGTAGCCAGGACACCTGGGCCTC----GTGGCCAGGCCAGAAGCCGTCCCCACCCTCCCACCC--------GTGGAATCCCCGCAGCACTTCTTCCTGGGGTCTTCGGGGGAAGACTGacttcctggctgcgtgacctggag-------------ctctgagcttcagttttctcacttgtagagtaacatacacagagttcaccctacagggtcgttagaaggctgaagtgagataattcatgtgctggtataaactttgtggaaatgtgaggtgGGGAGAGGAGGTGGGGCTGTTTTGAGGAAGGAGATAAGTTATTGGAGCCGCAAAAACAGGTTTGCTTGTGCCCTTCTAACATCGCCTTCCCTTTTCTGTTGCTG-AAGTTTTCCTTGGGCAGCAAGATCAATGTGAAGGTGGGAGGAAACAGCAAAGGAACCCTGAAGGTGAGGGCCA------GGGAAGGGGTGGGGCCAGGCACTGGTGGAGGAGAGGGTGTGGAGTGAGAGGCCTGTGGGCAGAGGCACATGGTCCGGGGAAGGAGGCAGACACCTCAGGGTTGGTGTCCCGTGCTTCCGTCCTGGGTGTTTTTCCCCCTGCTTGCTTTCGCTTGCTCTCCCCATCTCTGGGTACCTGTTGTTTCCTTTACCCGCCTCAGTGCTGGTGGCTCCGAATCCCACTCCTCAGCCCAGGCCTCTTCCCTGAACCATGGGCCCCACTCGTCCCACTCCCACAGCACCTCAGACGAGGCATGTCCCAAAGCCCTTCTTCATTCTGTGT-CTCTTGTCTGGCTGGTGGGAGCCCCTCCCAGCCAGGAGCCCAGCCACTACTCTAGAGGCCGTGTTAGTGGCCCCTCTCCCAAGCCTGTCCTTATGTCCCTAGTGACTCCTCCTCTGCTCCCCTGCTGCCTGTGGCCCTTGGTGCTGCATcctagattctgtgctgagacggccttctccctacctggaacttctctctacctcctg-tctcccctgtctgatccactgtccacacggcagtgacactgaccttccaaaagccccagccagatcaGCCTTGGGGAAAAGTCACTCCCCGCTGCCCACGGCTCAGATGGCTGGGCCTCTGCCCACCCCTCCGGCCAGACAGCTCTCCTTGTCTACACAGATCCCCTTGCCTTTCCTGTCCTTCCCTGCTTCTTGGCCCACAGGACAAGCTCTTTCTTCTCCTTCAAGCCTTGGCCAGAAGCCTTTCCTGAGCTTTTCAGTCCAGCCTCTTCCCAGCACAGTCTGGAGTGTTGGCCTCTGGGGGCAGGCCCCTGCTTCTTTACCTCTCTGTCTCGCCTGACGCCTGTGGCGAATGTGGTGCCACTCGTGTGTGTGGACTGTGCAGTGACGGGGAGGAAAAGGGGCTGAAGGCCTCAAATCCTGTAGCCCAGGGAGATGCCCTTAGGTATGGCACCAGAGA-GGTCTGTGGCCTCACATGTCCCACGTCCTCTCCCTGCCCCTTGCTGAGCCAGGTCCTTCGTACCTACAATGTCCTGGACATGAAGAACACGACCTGCCAGGACCTACAGATAGAAGTGACAGTCAAAGGCCACGTCGAGTACACGAGTGAGTGTGGGGGTTGGGAGGCCTTGGGGCCAGGCAGGGGCTGGCGCAGGGAGCCGGGTGGCCATCCCAGCCCTCCTCACAATGCTTCCCTGTGCAGTGGAAGCAAACGAGGACTATGAGGACTATGAGTACGATGAGCTTCCAGCCAAGGATGACCCAGATGCCCCTCTGCAGCCCGTGACACCCCTGCAGCTGTTTGAGGGTCGGAGGAACCGCCGCAGGAGGGAGGCGCCCAAGGTGGTGGAGGAGCAGGAGTCCAGGGTGCACTACACCGTGTGCATCTGGTGGGCGCCGGGAGCTGCCCTGG-----------------GCCAGGGGAGGGAGGGCAGGACCCAG---------GCTGGGGCTGGGCTTCTGGAGCCCGCGCAGGCAGAACCTGGACGACAGCTCACACGTCTCCACAGGCGGAACGGCAAGGTGGGGCTGTCTGGCATGGCCATCGCGGACGTCACCCTCCTGAGTGGATTCCACGCCCTGCGTGCTGACCTGGAGAAGGTGTGGTCAGCCACCCAGGGC----------------------------------AACCCCCTCTGTCCCAGGT-------ACTGAGCCCTGTCATGTGCAGGGC--------------CTGTGACCAACTCCCCTTTTCCACAGCTGACCTCCCTCTCTGACCGTTACGTGAGTCACTTTGAGACCGAGGGGCCCCACGTCCTGCTGTATTTTGACTCGGTGAGTGGGGAGAGATGAGGCAGGAAGGGACTCGATGGCACCGGGTTTACTGAGTATGCGTTAGGAGGTTTCTCAGGAGACAGCTGTGTCAGCGGCTGGTGCTCTTG---AGAACTTGTGATGTCATCAGAGAGA-AGGACAAGAATGTGAGCCCGTGAGACACAG--CAGAGTAAGGGGCAGACCTG----------------CAGGCGGCAGGGACCGATGCCAGTCAGCAGGGACCCTCAGGGTTTGAG--agggagtctttcctaatgctggttttattcagcttgaggggctgcctttgttttt--ttgttgaacttcct-----------atcttttttttaatattaaagcgtattttcctttacaaagtgatggtggccatagatgatagttgtatttgtcttttcacgaccttatttggctaaa----atagttatcaaccctcttacggctctcaaaA s canFam2.chr12 4439331 8843 + 75515492 gaatacaggacggcccatgccctgagcagctcgctgtcttgtgagcaagaaacgcttgAGCTGCATTCCCCCTCACTCTCCTGCTCATC-CTTCTGGGGCTCTCTGTCCTCCACCTCTCTCTGCCCCATCTCTTGCAGGAGGAGAGATGGAGGAAGCAGAGCTCACATCTTGGCGTTTTGTGTCATCTCCCTTCTCCTTGGATCTTAGCAACACCAAGCGACACTTTGTGCCTGGGGCCCCCTTTCTGCTGCAGGTTTCTTCTGGAGGAGA-GGATGGGAGGGTGGGGTGTTGT---CAAAAGGGCACATGGCCTCACTGAGCAGTCTCTTTTATCTGGCCCTCCTCCCTGCCCCCAGGCCCTGGTCCGAGACGTATCTGGTTCCCCAGCCTCTGGTATTCCTGTCAAAGTTTCAGCCACGTTGTCTTCTGCTAGATCTGCTCCTAGAATCCAGGAGCTTGAACAAAACACAGATGGGAGCGGCCAAGTCACCATTCCCATCATTGTCTCTCAGTCCACTTCAGAAGTGCAGCTCTTGGTAGGATATCC---GCTTGCGGGACAGGATTGGAGAAGGAAAGAAAGGCTGGCTGGCTTCTGGAAAGCCAGGGGCTACCCTGGCTAACCCCTGTCTTGGGCTTGGGGAAGAAGCTGGGTCCTGGGGTCTTTGCCACTGACCCTAGCCCTGCCCTGTCCCTCTTTCCAGGTGTCTGCAGGCTCCCCTCACCCTGCTGTAGCCAGGCTCACTGTGAGAGCCCCGCCCTCAGGAAGTTCTAGGTTTCTGTCCATTGAGCGGCCAGATCCTCGACCCCCTCGTGTCGAGGACACTCTCAACCTGAACCTGCGAGCTGTGGGTGTCAGCGGGGACAGCTTCTCTCATTACTACTACATGGTGCGCCTTGACCGGTT-GTTGAGCAGGGC-AGGGTGCAGGGATTGTCTCAGGCGGGAAGCAGCCCTGGGCACGGAGGGAACGGTTTTGGGATTGGGGATGTGCATGCAGTAAAGAGGAAACCA---------------TCCTTGCCCCAGATCCTGTCCCGGGGCCGGATTGTGTCTATGAATCGGGAGCCCAGGAGGGACCTGACCTCAGTCTCCGTGTTTGTGGACCATCAGTTGGCACCCTCCTTCTACTTTGTGGCCTTCTACTATCATGGGGACATTCCAGTGGCCAACTCCCTGCGGGTAGACATCCAGGCAGGGGCCTGTGAGGGCAAGGTAACTGGCATCGGGAGGGGCGG----TGTGTT-AGGGGATCGAGAGAGAAAGAAGAGAGATTGCGAGC------------------GGGTACACTGAGGAGGCGTGGGGCTGAAAGAAGCTCTCCCCACTCTGACTGCC---ACCTCCTGCCTCTGCCAGCTGGAGCTGAATGTGGGCAGCAACAAGGACTATCATCCTGGGGAGACCGTAAAGCTCCACCTGCAAACAGATTCTCCAGCCCTGGTGGCACTAGGAGCCATGGACATGGCTCTGTATGCTGTGGGTGGGAAGTCCCACAAACCCCTCAACATGGACAAGGTTTGTCAAGACCTCAGTTTTCCCCGGCCC-ATCTCCCCTTTTTCGCTCATTGTCCTGCTGTCCTGAGCCCTGGACCCAACCCCGAGATCTCACGCAGGCTCCCCCGAGGC-CTCCCTCATATCTAGACTCCTGTGGTCTATATTTCCCCATTCTCCGTATGTCTTTCAGGATTGCCCAAACCCTGCCTTCTCACCTGGAGCTGAGTGGCCGATCTGGCCCCTCA-----ACTTGTCTGC-AACATGCCGGCCTTTTCTTGCCAGGTCTTCCAAGTTATGAACAGCTATGACCTTGGCTGTGGTCCTGGAGGTGGAGACAATGCTCTTCAGGTGTTTGAGGCAGCTGGTCTGGCCTTTTCTGATGGAGACCTGTTGACCTCGGCCAGAAAGAGTGAGAACAGAGGAGGAAGGGGGGTTGGGTGACGGGAAGATCAGGAAGGAGGAGGGATCTGGGGGCATAAGATGGGAG-----------GAGGGTCAGTGCATAGGAAGGGAGCAAGGAAGGGAAGTGGGAGGCTATGGACCCT-CTGCTTGACTGC-GTCCTGCTTTCCACCAGGTCTGAGCTGTCCCAAAGAAGGAAAGCTCTCCCGGAATAAGAGAAACGTGAACTTCCAAAAGGCGATTCATGAGAAGTGTGAGTTGTGGGTGCCTGTGTAG---------CTCTCCACTAGGCCCAAGGGTTGGGGTGACGGGTCTGCCTCTTGGCAGCTCCACTCCTGGGTGGGCCTTGTAAATGGTATTTGGGGCCAGAAACCCAAGTTCTGGGGTTGGGGATGGATGGAGG----CTCTCTCCACTGGCCTCACCCAAGTTTCTGGTCTCTCAGGATGAGCCGTCGTGTATCTAGACGTCAGGGTAGGAAATGAGATGTGTCTCCATTTGGTTCCCCTGTGCTTACCCTCGCCTCGCCCTGCAGTGGGCCAGTATGCTTCCCCAGTAGCCAGGCGCTGCTGCCAGGATGGGCTGACGAGGCTGCCCATGGTACGCTCCTGCGAGCAGCGGGTGGCTCGAGTGCGGCACCCAGCCTGCCAGGGGCCCTTCCTGTCCTGCTGCCAGTTTGCTGAGGATCTGCGCAAGAAGTCCCGCTCCAGAGGCCAGGTGGGCCTTGCCCGAGGTGAGGCCCTGGGTGGTGCTGGGGGGCAGGCAGGCAGCCCTCTGGAAGGGCAGAATGGCCCCCCTCCTCATTGCCCTCCACTATGGTCTCCTAGCTCTGGAGGTCCTGCAGGAGGAGGACCTGATCGATGAAGATGACATTCCCGTGCGCAGCTTCTTCCCAGAGAACTGGCTCTGGACACTGGAAAAAGTGGACCGCATCCGCCAGTGAGGGGGTGTGGTGGGCTTGGCCTTATCTCTGGGCTCTTGTCTGGGGCTAGCCCAGGGTGTGACAGGGCTTCTC-GCCTTTCCCTCCGCAGATTGTCACCGATGCTCCCTGACTCTCTGACCACGTGGGAGATCCATGGTGTGAGCTTGTCTGAAAGCACAGGTGACATGGCCCTGCCTAGACCTCGGTGCTCCCCCGTCTCTCTCCCCTGGACCCAAGCTCCCCATGTAGCCCTCTGCTCTTAGCATGGGGCTGGGGGCAAACT-CCTGGGGACGTCTGTGTCGGTGTGT-GCTGG---GGCCCAGAGACTAGGAAGTGGCAGTGGGGGACGGGGAGTAGGGCAGAACTGGGTCACCTC-------------TGGGACCCTGTGGC-----------CTCTGGTCTCTGCGCCCCCTGCCTCACCGCCCCCCATCTGCCAGGCCTGTGTGTGGCTACACCAGTCCAGATCCAAGTGTTCCGTGAGTTTCACTTGCACCTCCGCCTGCCCGTCTCCATCCGCCGCTTTGAGCAGCTTGAGCTGCGGCCTGTCCTCTACAACTACCTGAAAGACAATCTGACCGTGAGGCCCTGGAGAAGCCTGAGCTTCCAGGGAGTGGGTGGGAGCTAGCGTG-GGTGAAGTGTGGGGAGCCCAGCTGGGTGGGGGCTCTGGCCATCCCCGTCTTCCTGCACCCAGGTGAGCGTCCACGTGTCCCCAGTGGAGGGGCTGTGCCTGGCTGGAGGCGGAGGGCTGGCCCAGAGTGTCCTGGTGCCCGCAGGCTCTGCCCGGCCTGTCAGCTTCTCTGTGGTGCCCACGGCGGCGACAGCTGTATCCCTGAAGGTGGTGGCTCGAGGGTCCTGGGATTTCCCCGTGGGGGATGCAGTGTCTAAGGTTCTACAAATTCAGGTGAATGGAGCAGTCCTGAGTCCAGGTCCCTAAGCTCCCAGATATACATTTTCTCCTCGCCCCTCAAACCCTCTATACCCTCTCTGCCGGCCAGGCCAGAGGCCC-----CTGAA----TACCTTGGTCTGATT--GTCTTCTACAATTCTAATCCCACTCTGTCCCTGAGATTCAGACTCCCAAGTCCCAGGGGGTGTGCAGTGGGAGGGGCAGGTCATAGTGCTGTGTGACCTCTCATAGCTGCATTTCCCCTGAGACAGAAAGAAGGGGCCATCCACACGGAGGAGATTGTCTATGAACTCAATCCCCTGGGTGAGTGGCCCCCTGCCTCTGGCCACCAGTGTCCTAATTGGG-------------AGATGTGGGCCGCCAAACAGGTTGCCAACTTCCCCCATTCCCCCAGACCACCGAGCCCGGACCTTGGAGATTCCCGGCAGCTCTGACCCCAATATCATCCCAGATGGAGATTTCAGCAGCCTTGTCAGGGTTACAGGTGGGAGTGCCCTCCAGTCTGTCCCCAGGG--CAGCCTCAGATTCATGTGAAGCCCACAGACCCCTGTTAGATCCC---------------------CTGGGTCCCCAGACCTGCTCGCTGACCCTTGCCCCTCCATTTCCCCTCTAGCCTCACATCCCTTGGACACTTGGGGCTCTAAGGGGGTCTTGTCGCCGGGAGGCCTGGCCTCCCTCCTGAGGCTTCCCCAGGGCTGTGGAGAACAAACCATGATCTACTTGGCTCCTACATTGGCTGCTTCCCGCTACCTGGACAAGACGGAGCAGTGGAGCACACTGCCTCCCGAGACAAAGGACCATGCTGTGGATCTGATCCAGAAAGGTGCCAGGCACA-GGGCGAGTAGGCATGGGGCTGGGAGGCGACAGAGGCAGG-----GGGTGGCCCAGCTTGCTG--GAGGGAACAGGAGGGGGCGCCTGTAGGGATTGGGGAGCGTGGCCCCGGGCACCTGTGGTGGG-GAGTGAGTGTCACCTCAGCAGCTGCCTCTTGTCCTCAAGGTTACATGCGGATCCAGCAGTTTCGTAAAACGAATGGTTCCTACGGGGCTTGGTTACATCGAGATAGCAGTACCTGGTGAGGTTGGGAG--TGTTTCCAGGTCTCTGAGAGGG-----GCTGGGGGTAGGGTGGGGTGCAGAGCCAGGTACAGTGGGAGGGTGGGTAACC-GGTGCCTGGGTGAGCAGGGATGTGTCCCCTGTGGGGACCAGGCACT-GTCCCCAGCCATCTTGCTCTCCCCACCAGGCTGACGGCCTTTGTGCTGAAGGTACTGAGTCTGGCTCAGGAGCAGGTGGGCGGCTCACCTGAAAAGCTGCAGGAGACAGCCAAGTGGCTGCTGTCCCAGCAGCAGGCGGACGGTTCATTCCAGGACCCTTGCCCGGTCTTACACAGGGGCATGCAGGTTCGGG---GCTGAGGCCAGTCAGAGGATCCCAGGTGGGAGGGCCCTTCCTGTTCCCACCTGCCTGCCCCCTGCCCCACTCTTGGCTGACATCTTTTCTGCCCCCTTCAACTAGGGGGGCCTGGTGGGAGACGATGAGACTGTAGCACTCACAGCCTTTGTAGTCATCGCCCTTCAGCACGGGCTGGCCATCTTCCAGGATGACGCTGCAGAGCAGTTGAAACAGAAAGTGGTAAGTGTACCCGGGTGTCTGCCCTTTCCTGATCCCCAGCTACCCCCCTCCCCCCTACCCCTGCTTTCTCCCCAGGAAGCTGGGTGTCCAGCTCCCTGACCTTCCTCCCCACTTTGTCCTAGGAAACCTCCATCTTAAGAGCAAACTTGTTCTTGGGGGAGAAGGCAAGTGTTGGGACCCTGGGTGCTCATGCAGCTGCCATCACAGCCTATGCCCTGACTCTCAGCAAGGCTCCTGAGGACCTGCAGGAGGTTGCCCACCGCAACCTCCTGGCCATGGCCCAGAAGGCTGGGGGTGAGAGCCACGGGGATCCTGGCAATGAGCCTGGGCCATGGGGGACCCCAGGACCCCTGAGTGTGCCCAAAGGGAGAAATTGAATGAAGATCTTAAGGAGGAATGGAAGCATGAGCAGAGATAA-TTGGGGGAGCATCAG-----------------------AGGGCCAGGCAACTAGGGCCCGCCCCCCA--------TTCACCCATCGGTCTC--TGCACTTCCAGATAACCTGTACTGGGGCTCAGTCCCTGGTTCTCAGGGCAACGTCATCCCACCTACCCTGGTTCCTCAAGGCCCAACAGACCCTGTGCCCCAGGCCCCAGCTGTGTGGATTGAAACCACTGCCTACGCCCTGCTTGACCTACTGCTTCGGGAGGGCAAGTCAGAGATGGCTGACCACGCTGCAGCCTGGCTTACCCACCAGGGCGGTTTCCAAGGCGGGTTCCGTAGCACCCAGGTAGGAGCTGCCCGGGGGCTC---CGGGGGTGGGTGGTCTTGAGACAGAG----TGCCTGAGCGCTGGCTCA-CCTCCCCAGGACACGGTGATAGCTTTGGATGCTCTGTCTGCATACTGGATTGTTTCCCACACCACCAAAGAGAGGGAGCTCAATGTGACCCTTAGCTCCATAGGCCGCAGTGGGTTCAAGTCCCATGAGCTGCAGCTGAACAACCACCAAGTGCAGGGGCTGGAGGAGGAGCTGCAGGTGAGCCACTCCCT---------------CACCTGGCTTGCCATGCCCCCGCCAACCCTACTGTGGCCAGGCCAGAAGCTGTC---ACCCTCCCACCCCCAGCCCTGTGTAATCCCCATGGGAGCTTGTCCTGATATCCTTGTGGGAAGA------tacttgctgagtgacctagagaaagtcacctaatctctgagcttcatttatcttatctcaagagtaacatatgcagagtctacccaacagggcttttaggaggctgaagtgaggtagtggacgtggagGAGTAAACCTCATG--AGTTTGGGGTCAC-AGAAGAGGAGAGGGTGTGTTCGGGGAGGAGGTG-------------------------TCCTGTGTGCCTTCCTGACATCTCTTTGCCTTCTCTGTTCCTGCAAGTTTTCCTTGGGCAGCAAGATTAATGTGAAAGTGGGAGGCAACAGCAAAGGGATCCTGAAGGTGAGAGCCAACGGCCGTGAACACCTGGGTCCTGGC--CAGGGGTGGCCATGGTCTTGAGAGGGAGGCCTGAGGGCAGAGGT-CATGGTC-AAGGAAGGAGGGAGCCCCCCTGGGGTGGGCA----------------------------------------------------------------------------------GCCCCCATCAAGGCTGATGGT-----------ATACACA-CCCAGGGCTCTCCCCTGAGCCACAGGCCCCGTGTGTCTCCT------GGCACCTCCACCACAGTGCCACCCCAACCCCTTCTTCCTCCTGTGTGCCCTCACCTGGCTGATGGG-GCCCCTTCCCTACGGGATCCCAGGCACCGCTCTAGAGGCCACCTTAGTGTCCCTACCCC--AGCCCTTCCTTATGACCCTGGcatctcctcctctactgccctgctgcccagggccctgtcacttgtttcctggactctgtt---agatggtttt----------ggaacttctccctacccccaaatctctcgcctcttacccattgtgcacatggcaggggtatcaaccttctgaaaacactagtcagactaGCCTTGGAGAAAAGCCAGACTCTTCCACCTGC-------ACGATCAAGCGTCTGCCCACTTCCCTGACCAGACAGATCCGCTCATCTACACAGATCTCCTTGCCTTGAATGTCCTTCCCTCCTTCTT--CCCGAGTGACAGACTTGTTCTTCTCCTGGAAGCTTGGGCCAGAAGCCTTCTTGGAGCTTTCCATCCCAGCCTCTTTTATGCCCCCTGGAGAGCACTTGCCCCTGAGGGCAGGCCCCTGCCTCCT-GTCTCACTGGCTAACCCCAGACCTGGG------------CCATCTGTATTTATAGACTGGTCAG----GAGGGAGGAGAGGGGCCCAAAGCCCGGACTCCCTCAGTCCAGG-AGATGCCCC-AGGTGTGGCCCCGGAAAAGGTCTGTG-CTCCAAACGTGCCCTGTTCTC-----ACCCCTTGTTGAGCTAGATCCTTCGTACCTACAACGTCCTGGACCTGAAGAACACGACCTGTGAGGATCTTCAGATTGAAGTTTCGGTTGTGGGTCATGTTGAATACACAAGTGAGTGTTGGGGTCGG-AGGCCTAGGGCCCTGAGGGGGCCAGG--------GCCGAGTGCCAAGTCATGACATCATCACCAT----CGCTGTGCAGGGGAGGCCAACGAGGACTACGAGGACTACGTGTATGAGGAGGTTCCAGCTAAGGACGACCCGGACGCCAGTTCCCAGACCGTGACACCCCTGGAACTGTTTGAGAGGCGGCGGAACCGCCGCAGGCGGGAGGCCCCCAAGGCGCCTGAGGAGGAGGAATCCAGAGTACAGTACACTGTGTGCATCTGGTGAGCACTGGG-GCTGCACTGGCACAGGGGCATCGCTGGGCCAGGAGGCGGAGGCTGGGAAGCAGAGGCCGGGAGATGGAGGCTGCATCCACCAGCCAGGGCATGTGGGCCCCGG--------TCGTGTTGCTCTGCAGGCGCAACGGCAAGGTGGGGCTGTCAGGCATGGCCATTGCGGACATCACCCTCCTGAGTGGATTCAGCGCCCTGCGTGCCGACCTGGAGAAGGTGTAGTCAGCATCTTGGGGGCAGTGGGGGGTGGTGAAAGCGCTGTGCGCTCGGGAGCCTGCTCTGTCCCTGATCTTAGCCGCTGAGCCCTGTCTGGTGCAGGGCTCAGGGCTACCTCCCAGTGACCATCTGTCCTTCCCCACAGCTGACCTCCCTCTCTGACCGTTATGTGAGTCATTTTGAGACTGAGGGGCCGCATGTCCTGCTGTACTTCGACTCGGTGAGCAGGGAGGGGCAACCCAGGGAAGGA-----GGACACTGGGTTTAGTGAGCATGGGTGACAAGGTTCCCCAGGGGGCAGCTGGATCAGTAGCCAGCACTCTGGGAGAGAGCCTGTGGTGTGAGCAGGGAGACAGGACAGACGAGTGCTGCAGCAGGGTTCCGTGCAGGCTGGGAGGCCACCCTGTCACCCTGTTGGTGGGCAGGCGATGGGGGCCGA-----GTTGGGATGCGGCTTGGGGGCTGGTGCCAGTCAGCATTCAGTAAAGCTGAATTTACTCAACT--GAGGGCTGCCTTGCTTGTTCCTACTTGACTTTCCTCATTTTGGGGGGTTTTGTTTTTGATATTGAAGTGTATTTCCTGTTAGAAAGTGATAACAGTCACGGATGA-----GTTTTTGTCTTTTTGTGCCTTTATTTGGCTAAAGCAAACAATCATCCATCCTCTGATGGCCCTCAAAC a score=185266 s hg19.chr6_ssto_hap7 3333352 5957 + 4928567 TTCAAAAAAAGTTTTGGAACATTTACTGTAACCTCTGGGAGAAAATGTGAGAAAGGTGTGGTGG--CTGT-----CATTA-GCCAGCTGTTTGTAGGTCAGGGAGACCCC---------TACCCAGTGTGTGCAGAGGGGCCAG--CCCCCATCAGCTGGGGAAGCCTGGCTGACACATCTGGGTTGAACACAATAGAAAACACAGAGCCAACAAGATTCCCGGATAGGGAGCTGACGGTGCAGCAGCCTAGCTCAGGAGGGACACTGGCACGGCACCGTGT-GGACTGGGCCCGCGTGGGCACGAGGAG--GGGTC-AGGCCTGGGACCTGAGTCGGGGGGTCA-------GGCAGGATGACAGAACCTGCAGTTAGGTTGTGGCAAATAAAGGAGGACCCAGTTGTATCCATGACAAAGATGAGGCCGCGAGGAGGGCGAGTGGGTTTGGGGGCAGGCAGAGTGCCT-TGGAGAACTTACAGGTCCTGCCACAATCCTAATGCAaggatggagctgcaagttcagtttgggaatcatcagcctggattggtttggtggaagccagggagtggttgagacccccacaggggAGCTCTGAGGAAGGAAG---------------------TTCCGAAGGAGGGAACGTAAGAA---------ATGACCAGGTCAGAA----CCAAGGGTGGTCCAGAAGCTAACCCTTAGCTTAGGGACAGTTTCACAGAGAACACGTCCATGATGCAAGACTCTGCTGAGGGCCTGGAGCAGTGAAGACTGGGGCAAGGTCACCCTCTGGGAAGTGAAGTCACCAGAGACCTTGCGGAGCAGCTTTGAGAGTTCTCTGAGTAGGAAGGTAACAGAATGTGAAGGACACTGGAGAGAAGGCCAATAGGAAGCAAACAAAAACAGGCCAAGGAAACCCAGTACAGGGGGCTGCAGGGCCCAGGGAGTGGGTCCCTCATCTCTCCTCCCCACGCTTGGCCAGGTCCCCACCTCCCGGGAGTGCGTGGGCTTTGAGGCTGTGCAGGAAGTGCCGGTGGGGCTGGTGCAGCCGGCCAGCGCAACCCTGTACGACTACTACAACCCCGGTGAGCACTGCAGGACACCCTGAAATTCAGGAGAACTTTGGCATAGGTGCCCTCCTATGGGACAATGGACACCGGGGTAGTG----AGGGGGCAGAGAGCCCTGGGGCTCCCTGGGACTGAGGAGGCAGA--ATGGAGGGGCCTGTGCCCTAACT--CCTCTCTGTTCTCCAGAGCGCAGATGTTCTGTGTTTTACGGGGCACCAAGTAAGAGCAGACTCTTGGCCACCTTGTGTTCTGCTGAAGTCTGCCAGTGTGCTGAGGGTGAGACTGAGGGCCTGGGGCGGGGCAGTGGAGGCGGGATGGCCGGGGCCCCCCCCACACTGTCTGATGGGTTCCCCAACTTCAGGGAAGTGCCCTCGCCAGCGTCGCGCCCTGGAGCGGGGTCTGCAGGACGAGGATGGCTACAGGATGAAGTTTGCCTGCTACTACCCCCGTGTGGAGTACGGTCAGTCTTCCCACCGAGGCCCTGGCCTGACCCTCCCTCGGGGACCGGCCGTTTTGGTCTCT--CTGGGTGTAGCCTGCTCCTCTTACAGGTCATGCACGCAGCCTGTTTGCTCTGACACCAACTTCCTACCCTCTCAGCCTCAAAGTAACTCACCTTT-CCCCCTTCTCCTCA-CCCCCTCTTAGGCTTCCAGGTTAAGGTTCTCCGAGAAGACAGCAGAGCTGCTTTCCGCCTCTTTGAGACCAAGATCACCCAAGTCCTGCACTTCAGTATGAAGCAAACCGGAGAGGCGGGCAGGGCTGGGG--GGAGACAGGGAGGCTGAGGT---GTGGCCGAGGACCTGACCATCTGGAAGTGTGAAAATCCC---CTTGGGCT--------GTCAGAAGCCTTGGGCTTGGCCATAAATAGGGAGGCAGTGGCACCTCTCCATGGGG-GTGGCGAAGGTGGAATGAGAGGATCTACACAGAGTCCCCAGCCTGG--GCTCACCCTGCACCTTCTCTTCCCCTCTGACCACTTTTGCGCACGTCATCCCCGCAGCCAAGGATGTCAAGGCCGCTGCTAATCAGATGCGCAACTTCCTGGTTCGAGCCTCCTGCCGCCTTCGCTTGGAACCTGGGAAAGAATATTTGATCATGGGTCTAGATGGGGCCACCTATGACCTCGAGGGACAGTGAGTCATCTGGTCCCCTCA-GTCTCTTGTCCTCCCCATGCCTCGC------------------CACCTAGGCCTTGCCCCTCAGAAGCCAGATGCCT-GTGCTCTCCGTTTCCACCTGCCATCCTCCCGAGCCCTGCTGACTGCCCCTTTGCCCCCTGCAGCCCCCAGTACCTGCTGGACTCGAATAGCTGGATCGAGGAGATGCCCTCTGAACGCCTGTGCCGGAGCACCCGCCAGCGGGCAGCCTGTGCCCAGCTCAACGACTTCCTCCAGGAGTATGGCACTCAGGGGTGCCAGGTGTGAGGGCTGCCCTCCCACCTCCGCTGGGAGGAACCTGAACCTGGGAACCATGAAGCTGGAAGCACTGCTGTGTCCGCTTTCATGAACACAGCCTGGGACCAGGGCATATTAAAGGCTTTTGGCAGCAAAGTGTCAGTGTTGGCAGCGAAGTGTCAGTGTGTGTTGCTAGGGCTGAGAGCAGTGCCCCTGCC--CGATGCAG--TTCTGGGCAGGCCAGG-TTGACATAACCTTAGACTCTCTGAGCCCTGATGACCCTTGGGCTGTTCAGCTCTGCTAGAACCTCCCAGATGACCCGCTAGGAGTCTAGTGCTTCACAGGACCACCCCGAGCAGAACTGGGACCCAAGAGCCTGCACCCCAAGGACCAGAGTCCATGCCAAGACCACCCTTCAGCT-----TCCAAGGCCCTCCACTGCCCGGCTGTCGCCAGTcaccacggcctcagacagggcttgtgctcagctgacacctgtgacacagctcttctgcctcat---gagctgttgtccagctacacctccccgactctgtcctcgtgctgctggcggttctgaggtctgcagattttagctgagttccgggctgttgaaagcctgctgacgcttggttctgttatcagtggaatgaggtgactttcccggagttgtgcaatcctcaggtccggcagtgtcttctTCCAGTTACTGGTTTCAAACAAGCCAAAAGTCTGACTT--TGGTGTGTTTGTGAATCCTCTGAGGAAGCCGCTGTTCTCCTGGGGTCTCCCCTTCCCACCGGACCTGCCTAACTTTCCCCCATTTAGTGGCACACCTGGGGTCTTCAGAGATGACTCCGCGT-CTGTCCAAAGAAGTTTGGTGAGATCAGTTTCCGTAGAGGTCATGACAGTTCAGCAGCCTGCCatccagtcattcgacagaaattcgggaatctttcacttcatgccatgccctgtgccaggtgccagagatacagctgctcactccagggctcatcgctggggagacagataagaggacgggcagtccccaccctctgtgaaagatgtgatgtcagggagcagtgtggtcctgtg-------------gggcatctaaccaagtcaggggcattgccaggcagggacagggaaggcttcctggagcaggtggcctccaagtggggctctgaagactgagaaggagccaggcaaagag--caggggtagatgagggcatctggggcagaag---gagaatatacaaaggcccagaggccgggggca------ggacagggta---cctttggggacattgcatgtaattg-accacattcggagtttggatttggaagtgg--tggaagagatggagatggtgagacaagtag-----------------------TAAGCACGTCAGCCTTCCAGGTGC--GCTCCTTTCCGATGAGCACTGTCTTATCCCACGTAACTTTGAGAAGTTTGGGCCTTTCCCACTGTGGCAGAGGTTTCCTGAGGCTCTTGCATACATGGCCCTATGGTTGCTCATCAGATCTTTCTCCCAGTAGCTGCTCAGCATGGTGGTGGCATAAGCCCATTTTCCGGAGCCAGGGATTCAGTTGC------AGCAAGACATGGCCCGG-TCTGGGAGGTCAACCATGAAGAAGGCAGTAGCTGTCATTGCCCA----ACCCCA----GAAATCCCAATCCTGTTTTCTCCCTCTCAGTCCTGATCATGGATTCAGCAGCAGCGAACTCGCCAATG---------------TAGTGGGTGGCACAGCCAGGGTCTTGACTCTGGCTCTGCAGTAGCACAGTCTGGAAAAGCTCTGAGGGGAGAG------------------AGACCCCCACTGGTCCGAGGGTCTGG-CACAGAGCCAGAAATGGGGGGGAAGGTATGAGGCTGGGTCGCCTCTGACCTCTCAGGTACCATCCAGGAGGCCCTGGCCTCTCACTGAACCCGGCCACTCCTCTTTGGCATGGCCTCTTCCCAAATCCCCAAACTGCCTCCTTACCCACAAAAGTGGTCTCTGAGTGTCAGTCCAGTGGGACCCCCACCCCTTATGGCTTCAGTTCCCCAAATAGGGCTGGACCCTTGATCCTGATCCAGCTGTGGCTATCCAGCCCCTTCCTGGGGACTTTGGACTT--------TGAGGGGGG--------------CATGCCCAGTTGTGCTGGGAATCCATACTTTCCCTGG--CTGGAGTAG-AACCTGTGGACTGTAGTCCTGAGGGCAGTCATGTTCTGCCTGTGCCTGGAAACACAAGAAACTTGACTGCAGAGAGAAGAAAGAG---------------GAGAGAGGAACAGAGCGAGGAAACCGCCCGTCTCCGGGGCTTTTTCTGTTCCCTATCCTTGACTTTCTAAGACCAGTGGGGTCCCCTCCTCTGCTTCTTTTTCCTGAGTTCTGTGAAATTCCCCAATTCTTAT-----------TTTTTATCTCAAACCAGCTCAAGGTGGGCTGTTTTCCTTTCAACCAAAGAAAGGTGCTCCTGGTGGCTAAAGGTACATATTCGACAGCTAGATTTCCAGGCTGGAATCCTGCCCtccacaacatgcgaacaatacccgtgttgcatatagagcatggctgtgaagagttgagtgagtgcccacaaagcacttagagcagtgtctggtacatgctaTTACTCCGCAGCGGGAAACCACTTCCTCCTTTGTCTTCTgggcacttttgtgagtgaaaggaggcactaataacaatcacactggga-tacctgtatatactggaatgccccaggcaaaccaggCTTAAACTGTATTACTCTATCTGTAGCTTAAACTAACAAACAACCCACACAAATCACATTTTGTTCTTCAGGCGATTCAGGA-AGGCCTATTAGGCAGGGACTGCCATTTTCTCTCTGAGACAAACATCATGCCAGTAAACTGGCCCACGGTGGGGTGGCAGAGGGAGAGGGCCCAGGT--GGGGGCGGACACTATTGCCTGCACAGTTGATGTGGAACCAGAAAGCTGACTCTGGATGCAGGAAAAAGGTCAGGGTTGCATTTCCCTTCCTTGCTTCTTGATGGGTGATCAAT---TTTTTTGAAATACGGACGTCCCAAGGCCAATGAGACTGGTGTCATTCCAGAAAAGGGCCACTCTGTGGGCGGGTCGGTGGGAGGGTACCTGAAGGTGGGG-TCAAGGGAGGCCCCAAAACAGTCTACACAGCAGGAGGGATGGCTGGGGCTCTTGAGCTATAAGTGGCACC-TCAGGGCCCTG--ACGGGCGTCTCGCCATGCTGCTCCTGGGCCTGCTGCTGCTGCCCCTGCTGGCTGGCGCCCGCCTGCTGTGGAACTGGTGGAAGCTCCGGAGCCTCCACCTCCCGCCTCTTGCCCCGGGCTTCTTGCACTTGCTGCAGCCCGACCTCCCAATCTATCTGCTTGGCCTGACTCAGAAATTCGGGCCCATCTACAGGCTCCACCTTGGGCTGCAAGGTGAGAGGCTGATCTCGCTCTGGC-----CCTCACCATAGGAGGGGGCGGAGGTGACGGAGAGGGTCCTCTCTCCGCTGACGCT--GCTTTGGCTGTCTCCCAGATGTGGTGGTGCTGAACTCCAAGAGGACCATTGAGGAAGCCATGGTCAAAAAGTGGGCAGACTTTGCTGGCAGACCTGAGCCACTTACCTGTAAGGGCTGGGG s canFam2.chr12 4448372 5527 + 75515492 CCCTCAAACTTTTTTCGAATGTGAACTGTAATCTCTTGGAGAAAATGTGAAAAAGATGTGTTAATACTGTAACACCATTAAGCCAGGCACTTGGGGATCAAGGAACCCCCCCACTGCCCTGCCCAGTGCCTGCTGACGGGCTGGACCCCCCATTAGCCTGAGAAGCTGGGCAAAGGAGTTTGGTT-----------GAAGATGAGGGGCCAGGAAGATTCCTGGGCGAGGAGTTGAC--TTAAGCAGCCCAGCTCAGGAGGGAAAGTGGCAGGGTACTGGGCAGGACCGAGCCAGTGTGGGCGTGAGGAGACGGGTCTGGGCCTAAGTCAGGAGCTGCAGGGTCACAGAGGTGGGCGAGTGACAGCACCTGCCGTTAGGTTATGACAGATAAATGGAGACCCTGTTGCACTGGTGATGAAG-CAAGGCTGTCGGGAGGG--GGCGGGCTTTGGGGCAGGCAGAGGGAGTCTGGGGAACTTCTAGGTCTCACAGCAATCCTAATGCAAGAATGAGGCTGAATGTTTAATTTGGGACTCATCGGCTGGGAAGGTTTTGGTGAAAGCCAAGGAACAGTTGAGACCTC---AGGGGAATGCAGGGGACGGGAGGAGCCCAGGCCCCAGACTGCGCCTCCAGGGAGGAAGAAGAGGAACGGTCACGCATGATGAGGTCAGAGAGAGCCAGGGACGG-CCAGAAGCTA-CCCTGAGCTTAGAGA--GTTTCATGCACAATGTGTCCACGATGTGAGACT--------GCCCCTGGGCACTGGAGACTGCGAC---GTCACTGACTGC-CAGTGAAGTCAGCAGAGACCTTGCAGAGCAGTTTTTAGAATTCTGGCAGCCAGAAGGTACTAGAATGTGAAAGATACTAAAGATAAGACCAG----------------ATAGGTCAAGGAGATGCAGCACAGTGGCCCGCAGCGCCCAGAGAGCATA-CCCTGACCTCTCCTCCCCAC--TGTGTCAGGTCCCCACGTCTCGGGAGTGTGTGGGCTTTGGAGCAGTGCAGGAGGTACCTGTGGGGCTCGTGCAGCCGGCCAGCGCCGCCCTGTATGATTACTACAACCCTGGTGAGCACCTGGGGACACTCAGCAGGTGGGGAG----------CAGGTGTCCCTGTGTGAGACATCAGGAGCTGGGGCCATGCCGTGGCAGGCAGGATGTCCTGCGGCTCCTTGGGA-TGAGGTGGGGGGTGGGGGAGGGACATGAGCTCTAGCCGCCCTCTCTCTTCCCCAGAGCACAAGTGTTCTGTGTTCTACGGAGCACCCACTAGGAGCAAACTCTTGTCCACGTTGTGCTCTGCTGACGTCTGCCAGTGTGCCGAGGGTGAGACCCAGGGCTGGGAGGGAGGGCAGGGAGCCGGTGAGGCGAGGGCCT-----GCGCTGTCTCACCTGGGCCCCTGATGCAGGGAAGTGCCCCCGGCAGCGTCGTGCCCTGGAGCGGGGGCTGCAGGACGAGGCCGGCTACAGGATGAGGTTCGCCTGCTACTACCCCCGAGTGCAGTACGGTCAGTCTTCC----GCGGCC--------------------------GCCGCCAGGGTCTCTGCCTGGG-----CCTGCTCCT------------GACCACAGCCGG-----------------------------------------AACACACCCGTGCTCCCTTCTCTTAAATTCCCCCACAGGCTTCCAGGTTAAGGTCCTCCGAGAAGATGGCAGAGCTGCCTTCCGCCTCTTCGAGACCAGCATCACCCAAGTCATTCATTTCAGTATGAGGGGAAC-GGATGGGCGGGT--GGCTGGGGTGGGGGATAGGGAG-CCGAGGTCAAGGGTTTGTGGCCCGGGTGCTCTGGAC-TGTGTAAGTTCAGGGCCTGAGCTCAAAGCCTTTTGGAAGCTCCGGGCTTGTCCATAATTCGAAAAGCGGCTGTACCTCCCCGTAAGGAGCGGTGAGGGCCAAATGAGAGGTTCCACGCC-AGCCCTGGGCCCCCCCGCTCACCCCGGACCTTCTGCCCCCCTCTGACTACTCCTGTGTACATCATCCTCTCAGCCAAGGACACCAAGGCCAAGGTCGGTCAGACCCGAAACTTCCTGGTTCGAGACTCTTGCCGCCTTCGCTTGGAACCTGGGAAGGAATATTTGATCATGGGTCTGGATGGGGCTACCTCGGACCTCAAGGGAGAGTGAGTTCTCTGGGCCTCCAATGTCTCCTGCTCTCCTCATGCCTCATGAGGGAATGGATGCCCAGCACCCAGACCTGCCCCGTCAGAAACGAGGTGCCCCGTGCCCTCCTCTCGCACCTCCCCACCCTCCCACCCCTGCTGACTGCCTTTTTGCCTC-TGCAGCCCCCAGTACCTGCTGGACTCGAATAGCTGGATTGAGGAGATGCCCTCCAAACGCCTGTGCCAGAGCACCCGCCACCGGGCAGCCTGCGCCCAGCTCAGTGACTTCCTCCAGGAGTATGGCACTCAGGGGTGCCAGGTGTGAGGGTCACCCTCCCGCCTCCCCCAGCTAATACCTGGATT----------------------GTTGCTGTACCCGGGCCCCTGGACAA--------------------TAAAGGCCTCTGGCAGCAAAGTGTCAGTGT----------------------GTCTCAAGGATTGAGAGCAGTGCCCCTGCCACCTTTGCCAGCTTCTG---AGGCCAGGGTTTGCATCATCTTCAGTTCTCAGAGCCTGGATGACCCTTGAGAGTGTC-------------TCTCTCAGATAATGCACTGGGAG------------------CATCCCTAGTGGACTGGTGACCCAGCAGCCTGTACCCTAAGGCTCTGGCATCACGCCGAAACCTCCCTTCCGCTCTGCGTGTGGGGTGCTCCCCTGCCCCACTGTGGCCAG---CGGGGGCCTCCGGCACAGCTCGTGCTCAGC-----CTCATGCCTTGGCTCTTCTGCTTTAGTTAGAGTGGCTGGT-GGCCACGTGCTTCCCGCTCTGCCCTCGAGCAGCTGTGAGTCCTGGGGTCTCCTGCTTGGAGCCGG--------------------------CCCCTGATCTCCTTA-CAGTG--ATTAGGGGACTTGCCCAGAGTTGTACAAG--------------------------------------------------------GACTTGGTGATGTGTGTATTAATACACTGGGCCAGCC---------------------CTCCCTACCTG-CCAGCCTAGCTCTCCCC-ATGTGGCGGCCCCCCTTGGGTCT-CGGGGCTGACCTAGAACACCAGCGAGAGAAATTGGCCGAGATCAGCTTTGATGGAAGTCT-----GTTCAGCAGCCTGCCACCCGACCGTGCAGCAGGAATTTGTGGCACTTTCACTCCATGCTGTGCCCTGGGCCAGGT----------------------------------------------------------------CCCCGTCCTCTG--AAACATGTAATGAC-TGGAGCTGCCTGGTCCTGTGCGGCACGTAGTTGgggcatctgacccagtctgggaga-------ggggagaaggggaaggcttcccggaggagatgacatctaacttgggttctgaaagct---aaggcatcaggcggagagggtgggggtgggtgagggcacttgaggcagacgatggagaccatg-aaaggcccagaggcCAGGGGCACTGGAGGCACTGGAGAAGCCATTTGGAGGCACTGCTTGTAATCCCATTGTGTCTGAAATTTGGATTTGGAGGTGGGGTGGAAGAGCTGGGGCCAGCAAGGCGATCAGGTCACTTTATGAAGGTTTGTTCCCACTCAGGCCAACTTCCCGGCTCCCTGTTCTTTCCTGTGGAGCCCC-TCCGAAGCCATGCAACCTTGGGAGGTTCTGGCCTCCACCCACGTCTCAGAGGCTCCCCAAGGCTGTTGCTGCCATGGCCCCTTGGCTGCCCATCAGGTCTCTC-CCCAG-AGCTGGTCAGCAGGGGCGCAATAAAG---CATTTACGAGAGCTGGGG-TTCAGCTGCTGCGGTGGCGAGACGCGGCCCGGGTCTGGGGTGTTAACTATGAGGAAGGAAGCAGCTGCCATTGCCCATTTCACCCCACCCCGAGATCCCACCCCTGCTTGTTCCCTCCTAGCCCTGGACCTGAGCTC--CCTCATCAGGACCCCCAATGGCAGCTCCCTCAAGCTGGTCGGTGGCTCGGCCAGCATTTCCATGCAGGGTCTCCAGCCACGTAGCCTGT----GCTCTCTGGGTAGAGCCAAGGGCGAGAAGGTCTAAGTCCTCCTGGGTGCAAGGATCAGTTCACAGAGCCAGGG---------------TGGGACCTGGTCACTTCCGAGCCCTCACTCCCACCCCAGGCAGCCCTGACCTCTCACTGGCCGCTATCACCCCTCCTTTG---------------AGCCTCCCAGCTGCTTCCTCCCCC-CTAAAGTGGTTCCTGCCTGCCCTACCTGC----CTTGCACCCTTTAGGGCAACAGCTCCCAGAATAGGGCTGGGCCT------CCATCCCAGCTGTGGCTGTTGGGTCCCTTCCTGGGGACTTTGGCATCAATGGGGATGGGGGGGGGCGGGGGCAGGGTTCATGACCGAACGTGCCAGGAA-CCTCCCTTGACCTGGGGCCGGACCAGTAACCCGAGGACTCTGACCCGGGAGGCAGTTCCATCCTGCCTGTTGCAGGGAGCACAAGCAGCCC-AGTGCAGGGAGAGGAGAGGGCGGGCAGGCAGACTCGGAGGAGGAGCAAGAGAGGGCAGCTG--------------------TGCTCCCCACCCCCCAGATTCCAAGGTCAGTGAAGTCCCTCTCT-TCCTGCTCGCTCC--GGTTCTCTGAGGTCCCCCTATATCTGCACAGTGAGTTCTTTTTGGCTCAAGCCAGCTTGAGTTGGCGCCTTTCCCCTGCCACCACAGA------------GCATATCAAGG-ACATA-------GTAAGAGCTCCAAACTGGG----------------------------------GGGGCATGTAG---------------------------------------------------------------------------------------TTCTTCA--------------acttttgagactgaaatagggcacgattaataattacactgggactgcaggtgtaacctgga-tgacccaggcagaccaggccgaaa---ggtcaccccaTCTGTAGGTGAAG--AACACGCAGGCTGCTTGCATCTCCTTTTGTCCTT-GGGCAAGCCAGGACGGGCATGTTAGGCAGGGATGGCCGTGGTCTCTCTGAGATAAAGCTT-TGGCGGGATGGTGGTCCCAGGTGGG-TGGCTCTGGGAGAGGGCGCAGGCCCGAGAGTGGCCACGTTGTCCTGTGTGGTTGGTGTGCAGCCAGAAAATCGATTCCGGCTGCGGGAGAAAGGTCAGGGTCACGTC-CCCTTCCTTTCTTCTTGATGGATGAGGGACCTGTTCTTTGAGATGTGGACTCCCCAAGGCCAGGGAGGCCGATGCCCTTCCAGGAA--------TACGTGGGCGGGACAGTGGGCCGGGACCCGACGGAAGGACTCAAAGGAGGCCGCAGAG--GTCGGAGCA-CAGGATGGATGGTGGGGCCGCAGGAGCTATAAGTGGCCCGGCCAGGGCCCTTGCACGGGTCTCTGGCCATGCTACTCCTCGGGGTGCTGCTGCTGACTGTGCTGGCTGGTGCCCGCCTGCTGTGGGGCAAGTGGAAGCTCAGGGGTCTGCACCTCCCACCTCTTGTCCCTGGCTGCCTGCACCTGCTGCAGCCCGACCTTCCCCTCCACCTGCTGGGTTTGACGCAGAAACTGGGGCCCATCTACAGGCTCCGCCTGGGGCTGCAAGGTGAG--TCTGCCTCTGCTCCGTCGCCAGCCCCACCGCGTG-------GGAGGT-------AGGGTCCCCTTCCTGCTGACACCCCGCTCTGACTCCTCCCCAGATGTGGTGGTGCTGAATTCTAAGAGGACCATCGAGGAAGCCATGGTCAGGAAATGGGTGGACTTCGCCGGCAGACCGCAGACGCCATCCTGTAAGGGCTGGGG a score=324020 s hg19.chr6_ssto_hap7 3339460 6397 + 4928567 AAGCTCTTGGGGGGGCATATCTGGTGGGGAGAAAGCAGGGGTTGGGGAGGCCGAAGAAGGTCAGGCCCTCAGCTGCCTTCATCAGTTCCCACCCTCCAGCCCCCAACTCCTCCT-GCAGACAAGCTGGTGTCTAAGAACTACCCGGACCTGTCCTTGGGAGACTACTCCCTGCTCTGGAAAGCCCACAAGAAGCTCACCCGCTCAGCCCTGCTGCTGGGCATCCGTGACTCCATGGAGCCAGTGGTGGAGCAGCTGACCCAGGAGTTCTGTGAGGTAAGGCTGGGCTCCTGAGGCCACCTCGGGTCAGCCTCGCCTCTCACAGTAGCCCCCGCCCTGCCCGCTGCACAGCGGCCTGCTGAACTCACACTGTTTCTCCACAGCGCATGAGAGCCCAGCCCGGCACCCCTGTGGCCATTGAGGAGGAATTCTCTCTCCTCACCTGCAGCATCATCTGTTACCTCACCTTCGGAGACAAGATCAAGGT------GCCTCACAGCCCCTCAGGCCCACCCCCAGCCCCTCCCTGAGCCTCTCCTTGTCCTGAACTGAAAGTACTCCCTCCTTTTCTGGCAGGACGACAACTTAATGCCTGCCTATTACAAATGTATCCAGGAGGTGTTAAAAACCTGGAGCCACTGGTCCATCCAAATTGTGGACGTGATTCCCTTTCTCAGGGTGAGGACCTGGAGCCTAGACACCCCTGGGTTGTAGGGGAGAGGCTGGGGTGGAGGGAGAGG--CTCCTTCCCA-CAGCTGCATTCTCATGCTTCCTGCCGCAGTTCTTCCCCAATCCAGGTCTCCGGAGGCTGAAGCAGGCCATAGAGAAGAGGGATCACATCGTGGAGATGCAGCTGAGGCAGCACAAGGTGGGGACTGTACGTGGAC--GGCCTCCCC----TCGGCCCACAGCCAGTGATGCTACCGGCCTCAGCATTGCTATGAGGCGGGTTCTTTTGCATACCCCAGTTATGGGCCTGTTGCCACTCTGTACTCCTCTCCCCAGGCCAGCCGCTCAGCCCGCTCCTTTCACCCTCTGCAGGAGAGCCTCGTGGCAGGCCAGTGGAGGGACATGATGGACTACATGCTCCAAGGGGTGGCGCAGCCGAGCATGGAAGAGGGCTCTGGACAGCTCCTGGAAGGGCACGTGCACATGGCTGCAGTGGACCTCCTGATCGGTGGCACTGAGACCACAGCAAACACCCTCTCCTGGGCCGTGGTTTTTTTGCTTCACCACCCTGAGGTGCGTCCTGGGGACAAGCAAAAGGCTCCTTCCCAGCAACCTGGCCAGGGCGGTGGGCACCCTCACTCAGCTC---TGAGCACTGTGCGGCTGGGGCTGTGCTTGCCTCACCGG-CACTCAGGCTC----ACTGGGTTGCT-GAGGGAGCGGCT--------GGAGGCTGGGCAGCTGTGGG-CTGCTGGGGCAGGACTCC-ACCCGA----------------TCATTCCCCAGATTCAGCAGCGACTGCAGGAGGAGCTAGACCACGAACTGGGCCCTGGTGCCTCCAGCTCCCGGGTCCCCTACAAGGACCGTGCACGGCTGCCCTTGCTCAATGCCACCATCGCCGAGGTGCTGCGCCTGCGGCCCGTTGTGCCCTTAGCCTTGCCCCACCGCACCACACGGCCCAGCAGGTGACTCCC--GAGGGTTGGGGATGAGTGAGGAAAGCCCGAGCCCAGGGAGGTCCTGGCCAGCCTCTAACTCCAGCCCCCT-TCAGCATCTCCGGCTACGACATCCCTGAGGGCACAGTCATCATTCCGAACCTCCAAGGCGCCCACCTGGATGAGACGGTCTGGGAGAGGCCACATGAGTTCTGGCCTGGTATGTGG-----GGGGCCGGGGGCCTGCCGTGAAA----------ATGTGGTGGAGGCTGGTCCCCGCTGCCGCTGAACGCCTCCCCACCCACCTGTCCACCCGCCCGCAGATCGCTTCCTGGAGCCAGGCAAGAACTCCAGAGCTCTGGCCTTCGGCTGCGGTGCCCGCGTGTGCCTGGGCGAGCCGCTGGCGCGCCTGGAGCTCTTCGTGGTGCTGACCCGACTGCTGCAGGCCTTCACGCTGCTGCCCTCCGGGGACGCCCTGCCCTCCCTGCAGCCCCTGCCCCACTGCAGTGTCATCCTCAAGATGCAGCCTTTCCAAGTGCGGCTGCAGCCCCGGGGGATGGGGGCCCACAGCCCAGGCCAGAACCAGTGATGGGGCAGGACCGATGCCAGCCGGGTACCTCAGTTTCTCCTTT-ATTGCTCCCGTACGAACCCCTCCCCTCCCCCCTGTAAACACAGTGCTGCGAGATCGCTGGCAGAGAAGGCT---TCCTCCAGCGGCTGGGTGGTGAAGG---ACCCTGGCTCTTCTCTCGGGGCGACCCCTCAGTGCTCGGCAGTCATACTGGGGTGCGAGAGAGGTGGGCAGCAGCTCAGCCTCCCC---CCGCTGGGGAGCGAAAGTTTCTTGGTCTCAGCTTCATTTCCGTGAAGGGCACCGAGAACTCGAAGCCCTTCCAGTGGTACCAGCTCACTCCCTGGGAAAGGGGTTGTCAAGAGAGAGTCAAAGCCGGAT----GTCCCATCTGCTCTTC----------CCGTTCCCC-----TTAAGGAGGTAGCTCCCAGCACTCAACCAACCTCCCCGCAGAGCTCCCTTCCTGACCCTCCGCTGCAGAGGATTGAGGCTTAATTCTGAGCTGGCCCTTTCCAGCCAATAAATCAACTCCAGCTCCCTCT------------GCGAGGCTGGCATGATTGTTCCATTTCAC-------------------CCAGCCGCTCAGTCCCTTG-CCTGTTACACTGTGGGGCTGAAACCTAGGCAGGCCGAGCCCCAGCCACCCCAGCTCTGAGCCGCCTCCCCACCCCTCACCTGATGGTCCACTGTGCTCCCGTAGAGCCCGTTGAGGTTGGCGTAGTGGCAGTTCCTGTACCACCAGGCCCCTCGGTAGGAGACAGCGCAGGAGATGAGCAAGCTGTTGGGGTCCCGATCACGGGCAGAGAAGACACTGCCGCTGTGGTAGCTCATGGAGTCCCCTGGGCAGGGTGGAGGAAGGAGCCATGAGGGCCTCCCCTCCCA-GCCTCACCCTCC-CAGCCTCACAGCCTCTGCTTACCTGCGGTGCCGTGGTAGCCCTCCAAGTGGAGGCGGTAGTACTCCGCAGCCGAGTCTACGTGGAAGGAGTCGTACTGGGCGAACACAGCCTCGTCCCCAGCCCGCAGGTCCACGCGCATGGAGTAGTCACCTGCCTGTGTCAGGCTGTGCAGGGCCTCATTGCCTGGGGGTGGGATACGTGCCCTCATCAGGGTCCT------GGTGTCCACAGGGCC--CCCATCCCCATCCGTAGTTCCCCAGTCCCTGTGAGGCACTGACCCAGCCAGAACTCTCCAGAGATGTTCCCAAAACCATGGGCATAGTCCTCCCAGTCCCTCCAGAAGTCTGTCTGTCCATCCATGCGGCGCTGGAACACCTGGGAAGCAAGTGGGGGCACCATCAGCCTCTGGCTCCCGGGGCAACAGACCCTGCCCTGCACAGACCCCTGGGC-TTCCCAATGCCACCCACCAGCCAGCCGCCCCCATCAGTCTCCATGTCGCAAAACACGATCAGGGGCCGCTCGCGGTTGCCGTTGAGGAAGATGGTGCTGGTCCTGGAGGCACCGGCTCCGTTCTGCATCTCCTCCCCGCAGTCCCTGGGGAAGGGGATCCGCAGCCCACCTGGG-AGAGGAGAGC-AGGGGCCAGTCCT-TTTCCAAGCCTTAGGCCCTGGCTGCCCACCCAGCCCCCGGCCCCGGGCCCGTGCGTCCAGGTACCCGTGGTGAAAGAGGTGGACACGGGCGGCAGGAGGCTCTGGCCCCACATGGCCTGGAGCCGTGCATTGTAGGAGGTGGAGGGAAAGAGGCCAAGGAGCTGGTGAGATGTGATCCCTCCTGGGAGCAGGATCTCCTGTGGGACAGACAAGGGG-GGGTCAGGGGAGAGGGAGGTGGAGACCCTCCGGGAGGGCCAGAGG-----CAGCACCTCCTGGAATCACCCAGGGAGGGGAGTTGGGTCAGTGGGGCCGGGGCACCTGGGTCTGTCCACCAGGGGTGTGGAAGCTGAGCAGGTAGCCTGCGGGCCGGACTGGGGGCTCAGTCCAAGTGAGCAGGGCGGTGCGGGGGGTCACTTCCTTGGCCTCCAAGTCCCGAGGGGCCTCTAGCCCTAGGAGGGAAAGCAGGAAGAG------------------------------GAGATGGGGATGAGGCCCAACCTGGCTCCCTCTACCTCCTCTCCCTGTCCCACACACCCCACAGACCCTACCTGTGGTGAAGGTGATGCTGGCTGGGGAAGTGAGGTTGGGGCCCCGCAGGCCACGCACTGTGGCGGTGTAGTTGGTGTGGAGGACAAGGTCATGCAGGGGGTAGTCCACCGCGCTGCCTGGGGTCTCCGCCTGCAGAGGCGGGGCTGGGAGTGTAGAGAGGGGCATCAAGGCCTGCCCCCTCCATCCTCGGCCAGAGTCCAGCCTCCCCCCTGCAATCCCCACCCTGAACAAGTCCCCTCCAGAGGCCTCAGCCCTGCTCACCCCCAGGGGCTGTGACCTGGATGTCATAGGTGTCTACAGGATTCTGGGGGGGCTTCCAGTGCAGCACGGCGAATCCCTCGGTCAAGTTCAGTGCACGCAACTGTGTGGGACCGTCAGGAACTGGGGGAAGGGGAGGGGCTCAGAGGGGTCCCCGCGGCTCTCTCTACTCCGTGCCTCCCCAGACTCCACTGGCCTCCCGTCCGCAATCGGAGCCTCCACCACCTCCCTTTCACCCTCCTCGTTCTCTCTCAACTCCCACCCATGCCGTTTTCTTGGCTCCCACCTCTTGCCCCGGGTCCCAGTCCATCTCACCCGTGGTGAGGAAGCCTGTGAGAGGCTCACTCTCCTCAAAGCCTCGGACCGAGACCACGGTCACCTCATAGCGAGCGCCTGGGATCAGCCCCTGGAGTTTCTGGGTCCGGGCCTGGCCATCCACCTGCACACTCTGAGGCTCCCCTGAAAACATTGGGGATCGAGGGTT-ACCCAGGGAACCCCAGGGCAGCTGGAGGGTGGGCAGAGTGCAGGGGG---GAGAGGAAATGCGAGGCGATGAGCACATGGCAAAGGCACCACCTCCGTCCGCCAGCTGGTAGGAGACTTTGAAGCTGTCCGCCCGGGATGGTGGGGGCATCCAGTTGACCTTGGCTGAGGTCTCCCTGATTTCACTGAATTGGAGGTCACGGGGGCTCTCCAGAACTGCAGAGGG------GTCAAGGAA---CAATGACGCAGGCAGGGGCAGGGAGGCTTCTCCCTACGAGTCCCCCCCTCGCCTCTGCTCCAG----------------CACAGGCTCACCACC--CCTTTTCCTCTAGTCCCCAGGAATGGAAGTCGCTCTGCAGATTCCTC-CAGGCCCACCACCAACTCGCCCACCCCCACCGCTGGCTGAGGCACTAGGTCCC-CCCCGTGAAGTACAAAGACCCC-CACTTTGGGGCAG------AGTGTG-----TGTGGGTCCTTACCTGGGCTGAGGGTGCGGGCGGTTCCCTGGATGCTGTCGGCCTTGTGGGGTCCTCGCAGCCCATACAGTGTCAGGCTGTACAGAGTCCCGGAACGCAGGTCCCGGAGCACGGCCGAGTGCCGCGTCCCCGGCACCATCAGCTCGCGCTGCAGCAGTGGACGCGGATGCGGCTCCAGTGTGCTTGGTGATGGAACCCCAAAGCGGAGCAGGAAGGAGTCGAAGGCCCCCGGTGGGGCCTCCCAGTTGAGCCTCAGTGAACTGGTGGTCACGTCAGTCACAGACAGCTGGGACAGGCGGGGCCTTGACTCCTCTGAGGTCTGACCAGCAGGAGCCAGCCCTGCACGGAGTGGGTGGGGGAGAAGGGATTGGAGACAGAAGCACACCAGCTTGGTGACCCAGAGCACGTCCCTTCCACC-CCCCTCCCTGCCCCC--GTTTCTCTATCTGTAACCAGGGACTTGCAGCCACAGGGGGGTCCTGTGGGGCAG------AGCTAAAGGCCAC--------------------TCGCATCCAGCCCATCCATCCTCTCTCCCTGGTACCCGCCTCACGCTCTTTCCCTGCGACCACCCCTTCTGAGC-CCCCGTTTCTCCCTTCTGAGTCCTAGGCTAGAGGCCGGAGACGCCT-------------------GGTGGTACCTGTGGTGCCCTCAGCTGAGAGGGGCCCCAGGCGCTTCCCTTCATGGAGGCCATAGAGGAGGAACCTGTAGGGGGTGCTGGGCTCCAGGCCTGAGATGAGGATCTTGCTCTGGTCGCCGTCCACGAGCAAGGCCTGGGGCTGCCCGTTCGTGTCCTCATACTGGACCACGAAGGAATCAAAGGGGCCCTGGGCCACGCTCCACGAGAGGCGCATGGAGTCTGGGGTTGTGTCGGTCACGGTCAGCACTCCTAGGCGGGGCTCTTCAGGAGGCTCAGGGGCCTCTGGGGC-TAACTCT--GGGGCTGGTGTGTCCTCTTCTGGGGCTGCGTGGGAGAAGCCCAGGGGAGAATCTGAGTGAGGGGCGCCATG s canFam2.chr12 4453899 6326 + 75515492 CGGTTCTCGAGGGAC--------GTGGGCTG---TCAGAGGCCGGGAAGGCCA-----------GCCTGCGGCTCCCATGGTCCGTCCCTCCCCTCT---CCTATTCTCCTACTCGCAGACAAGCTGGTGTCTCTGCACCACCAGGACCTGTCCCTGGGGGACTACTCCCTGCTGTGGAAGGCTCACAAGAAACTCACCCGCTCAGCCCTGCTGCTGGGCATCCGCAGCTCCATGGAGCCGCTGGTGGAGCAGCTGACCCAGGAGTTCTGTGAGGTGAGGCTGCCGCCCCACAGCCGCCCCAGCTCCGCTGCCCCTTGCCCGGCGGCGCCCG-------------------GCCTGCTTAGCTCCTGTTCCTCCTCCGCAGCGCATGAGAGCCCAGGCTGGCACCCCTGTGGCCATCCAGAAGGAATTCTCTTTGCTCACCTGCGCCATCATCTGTCACCTCACCTTTGGAGACAAGGTCAAGGTTTTCTTGCCCTCCATGTGCTGGGGCCCTTCTTTAGCCTCTCCCTGGCCCTCTC-TGGTCCTGAACTTT--TTTCTTCTTTTTTTTTCGGCAGGAGGACACCTTAGTACATACCTTTCATGACTGTGTTCAAGACCTGATGAGAACCTGGGAGCACTGGTCCATCCAAATGTTGGACATCATTCCCTTTCTCAGGGTGAGGGG-TGCAGCCCAGAC-TCCCTGGGTCCT--GGGAGGGGC-GGTGCGGGGGGAGCAGGCCTCCTTGCCAGCGGCTGCACCCTTTTGCCCCCTGCCCCAGTTTTTTCCCAACCCAGGCCTCTGGAGGCTGAAGCGAGCCTTGGAGAACCGGGACCACATCGTAGAGAAGCAGCTGAGGCAGCACAAGGTGGGAAGGCCGCGTGGGCCTGGCTCCCCCGCAGTCTGCCCCCAGGTGGCGCACCTGCTGGAC--------GCGCTCAGGCGGGCTC---------------------------------------CTCCTC---------------------------------CCCACCACAGGAGAGCATGGTGGCAGGCCAGTGGAGGGACATGACCGACTACATGCTCCAGAGGGTGGGGAGGCTGAGAGCAGAAGAGGGCTGTGGACAGCTCCTCGAAGGACACGTGCACATGTCCGTGGTGGACCTTTTCATTGGCGGCACCGAGACCACGGCCACCACCCTCTCCTGGGCCGTGGCGTTCTTGCTTCACCACCCTGAGGTGCGCCCTGGGGGCAGCCC---GGCTGGGGCCCAGGAACT---------CGGTTCGCTGCCTCCCCCCGCCCCCATGGGATGCGTTCACCCAGGG--GCGCTTCTCCCAGTGGGCACGAAGGCTCCTCCACTGGGTTGTTCTAGGGAGGGGCCCGGGGCCGGGAGGCCAGGCAGGCCTGGGTCAGCTACCTCAGGGTTCCCACCCCAGACACCAGGCTTGCTCCCATTTCCCAGATTCAGCAGCGACTGCAGGAAGAGCTGGATCGGGAGCTGGGTCCTGGAGCTTCAGGCTCCCGAATCCCGTACAGAGACCCCACACGCCTGCCCCTGCTCAGCGCCACCGTTGCCGAGGTGCTGCGCCTGCGGCCCGTCGTGCCCCTGGCCCTGCCGCACTGCACCACGCGGCCCAGCAGGTGACTCTCCTAAGAGCTGGGCACACGGGGGA-----CCAAAGGGTGGGGGATCCTGGTGGGCCTCTGACTCCACCTTCCTCTCAGTATCTCGGGCTACGACATCCCCGAGGGCATGGTTGTCATACCCAACCTGCAAGGCGCCCACTTAGACGAGACGGTCTGGGAGCGGCCACAGGAGTTCCGGCCCGGTGCGTGGTGGCAGGGGAGGGGCGGTGGCTGCGGCACAAGGGCTGGGGGCGGCGGAGGCCAGTCCCCACCGCTACTGGACCCTGGTTC-------TATCCTCCTGCCCGCAGATCGCTTCCTGGTCCCCGGCGCCAGCCCCAGAGTGCTGGCCTTCGGCTGCGGGGCGCGTGTGTGCCTGGGGGAGCCGCTGGCACGCCTTGAGCTCCTGGTGGTGCTGGCGCAGCTGCTCCGGGCCTTCACGCTGATGCCCGCTGCGGGCACCCTGCCCTCTCTGCGACCCCGGGCCCGCTGCGGCGTCAACCTCAGCATGCAGCCTTTCCAGGTGCAGCTGCAGCCCCGGGGGGCAGGAGTCCTGGGACGTGGCCAGCACCCATGACAGG-CAGGACACACGACGGCTGTGTGCTTCAGTTTCTCCTTTTATTTCTCCCGTACAAACCCCGTCCCTCCCCCCTGTAAACATGGTGCTGTGAGATCGCAGATGGAGAAGGCTCCCTCCTCCGGTGGCTGGATAGTGAGGGTGGCCCCTGGCTCTTCTCTCAGCGCGACCCCTCAGTGCTCGGCAGTCATACTGGGGCGCCGGAGATGTGAGCTGTGG-TCAGCCTCCCTGGGCTGCTGGGGGCCGGTAGCTTCTTGGTCTGAGCTTCATTTCCGTGAAGGGCACAGAGAACTCGAAGCCCTTCCAGTAGTACCAGCTCACCCCCTGGGAAAGGA-TTGTTGAGACAGAGTCAGAGCCAGACAGACGTCCCATCTGCTCCCCAGCCTACACCCTGCACCCCGGCATCTGGGGAGATGGTTCCCAGAAATCAATCACCCTCCCC-CCGCACCCACTTCATGATCCTCAACTGCAAAGGCCGGAGGCTTAGT-CTAAGCTGgccctttacatccaataaatcgtgctcatgtctccctcgagatgacctggtgagattagcattattgtttcatttcacagatgacagcccaaggcgccaagcggctctgtcgctcatcccgccaccccgcag--------------caggctgagccc---------------tgagccac-tcccagCCCCTCACCTGGTGGTCCACTGTACTTCCGTAGAGCCCGTTGAGGTTGGCGTAGTGGCAGTTCCTGTACCACCAGGCCCCGCGGTATGACACCGCGCAGGAGATGAGCAGGTTGTTGGGGTCGCGATCACGGGCGGAAAAGACACTGCCACTATGGTAGCTCATGGAGTCCCCTGGACCGGT--GTGAAAGGGGCAGTGAGGGCCTCCCCTCCCCTGCCCCACTGTCCACGGGCCCCAGGTCCACCCTGACCTGCTGTGCCGTGGTAGCCGTCCAGATGAAGGCGGTAGTACTCCGCAGCTGAGTCTACTCGGAAGGAGTCATACTGTGCGAACACGGCCTCGTCCCCAGCCCGCAGGTCCACACGCATGGAGTAGTCGCCCGCTTTTGTCAGGCTGTGCAGGGCCTCGTTGCCTGGGGGTAAGG-AGGTGCTCTCACCAGAGTCCCCCATCCACCGGCCACCGGCCCTTCCCGGCCCCGCCCCTG---CCCCTGTCCCTGCGAGGCACTGACCCAACCAGAACTCCCCAGAGATGTTGCCGAAGCCGTGGGCGTAGTCCTCCCAGTCCCTCCAAAAGTCTGTCTGTCCGTCCATGCGGCGCTGGAACACCTGGCAAGCAGGGGGAGCCACCATCAGCCAC-GGCTCCGGGCACAGCAGCCCGTGCCCCGCGCGGACCCTTGGGCGTTCTGTCCGCCACCCACCAGCCAGCCGCCCCCGTCGGTCTCCATGTCACAAAACACATTGAGGGGCCGCTCGCGGTTGCCATTGAGGAAGACGGTGGTGGTCCTGGAGGTGCCGGCTCCGTTCTGCATCTCTTCCCCGCAGTCCCGAGGGAAGGGGATTCGAAGTCCACCTGGGGAGAGGAGAATGACGGACCGGTCCTGTCCCCGCGCCCGGCGCCCTG-CTGCCCGCTCGGCCCCCCGCCTTAGGTCCCAGCG-CCAAATACCAGTGGTGAAGGAGGTGGACACCGGCGGCGTGAGGCTCTCGCCCCACACAGCCCGGAGCCACACGCTGTAGGGGGTGGAGGGAAAGAGGCCCAGAAGCTGGTGAGAAGTGGCCCCGCCTGGGAGCACGACCTCCTGTGG-ATAGATGAGGAGCAGGTCAGGGCCGGGCAGGG----GACCCACTGGGGGAGGTGGGGGACGGGCAGCGTCTCCTGGAACC-----GGCGGGGCTGGCCAGTGAGGGAGAGAGGAGCACCTGTGTCTGTCCACCAAGGGCGTTGAAACTGAGCAGGTAGCTAGTCGGCGGGACTTGGGGCTCAGTCCAAGTGAGCAGGGCCATGCGGGGGGTTACTTCCTTGGCCTCCAAGTCCTGGGGGGCTTCCAGCCCTGggaggggaggtgggaagagaagatggagatgcagatggagatggagatagagatggagatggagatagagatgACCTCCCCTGCC-------CCTGTGGCACACACCACCCAGGCCGTACCTGTGGTGAAGGTGATGCTGGCTGGGGAGGTGAGGTTGGGCCCCCGGAGACCACGCACAGTCGCTGTGTAGTTGGTGTGGAGCCTCAGGCCCCCCAGAGGGTACTCCACCGCGCTGCCAGGGGCCGAGGCCTGCAGTGGGGGGTCTGGAGGTGGGGTGAG---CATCAGCCTCTGCCCCCTCGGTGCCCTGCCAGAG----------CCTCTG---TCCCCTCCCTGACCAAGTCCCCTCTGGAGGCCTCAGCCCAGCTCACCCCCTGGGGCTGTGACACGGATGTTATATGTGTCCACGGGGGCCTGAGGAGGCTTCCAGTGCAGCAGAGCTGATCCCTCCGTCAAGTTCAGTGCACGGAGCTGGGTGGGGCCATCAGGAACTGGGAGAAGGGAGGAGGCTCAGAGCTGTCCCCGCTCCCCTCTCCACGCCTCACCTCCCCAAGCTCTACGGGCCTCCTGTCCACAGTCGAATCCTCTCACGCCTCCTT-----CCCCCTCATCCTGTCG--------------------------------------------GGGACCTAGCCCATCTCACCTGTGGTGAGGTAGCCTGTGAGAGGCTCACTCTCCTCAAAGCCACGGACAGAGACCACGGTCACCTCATAGTGAGAGCCTGGCATCAGCCCCTGGAGTTTCTGGGTCCGGGCTTGGCCATCCACCTGCACACTCTGTGGCTCCCCTGAAAACACACAGGCTTGGGAGTTTGCCCAGGGAAGCAGGCAAGAGCCACAGGGTGAGCAGACTGCAGGGGGCGGGAGGGCAAAGGGGGGGCAA------------AAGGGGGTCACCTCCATCTGCCAGCTGGTAGGAAACTTTGAAACTGTCCACTCTGGATGGTGGAGGCATCCAGCTGACCTGGGCCGATGTTTCCCTGATTTCCCTGAACTGAAGGTCCCGGGGGCTTTCCAGAACTGAGGGGAGAGGTGTGCCGAGGAATGTCAGTGAGGGTGCC--GGGCAGGGAGGCTCCTGCCTCGGGATCCCCTGCCCTGCTCCTTCCCAGGGCCCCAGTGGCTGCACACCTGCTCACCACCAGCCCTTTCCTCCAGACCTCAGAGA-GGAAG--ACTCTGGAGATTCCCCTCAGCCCCACCACACAC-----CAACCTCCCCTCTGGCGGAGGCACTAGGTCCCGCCCCACAAAGTACAAAGACCTCTCACATCAGGGCAGCACACGAATGTGCCCACTGTGGGGCCTTACCTGGGCTGAGGGTACGGGCTGTGCCCTGGATGCTGTCGGCCTTATGGGGCCCACGCAGCCCATACAATGTAAGGCTGTACAGGGTCCCCGGATGCAGGTCCCGGAGCACGGCTGAGCGCTGCGTCCCTGGCACCGTCAACTCCCGCTGCAGCAGGGGACGTGAGTGGGGCTCTAGAGTGCTTGGTGATGGGACCCCAAAACGGAGCAGGAAGGAGTCAAAGGCCTCGGATGGGGCCTCCCAGTTGAGCCGCAGCGAACTGGTGGTCACATCAGTCACTGACAGCTGGGACAGGCGGGGCCCTGGCTCCCCTGGGGTCAGACCGGCAGGAGCAGGCCCTGCACAGAGTGGGTG--------------GGAGACAAAAGCACACCACGTTGGTGGGCTGGAGCAGGTCTCTCCCACCACCCCACCCTGGCCCCAAGTTTCTC-ATATGTGAGGTGG--------------TGGAGCTCATGCGAGGCAGGTACTCAGCTGGGGCCCATGTGAGCATGTGTGTGGAGCACCACAGGCGGCTGCTGCACCCCTTCCTCC---------CTCCACAC---TGCCCTCCAGTCACTGCCTCTGGGCACCCCCTTTAGCCCTTCC-AGTCCCAGACCTGAGGTGGGTGAGGCCTAGATACGGGGCCCTTGCCCGGCGGTACCTGTGGTGCCCTCAGCTGAGATAGGCCCCAGGCGCTTCCCTCCATGGAGGCCATAGAGGAAGAACTGGTAGGAGGTGCTGGGCTCCAGGCCTGACACTAGGACCTTGTTCTGGTTGCCACCCACGAGCAAGGCCTGGGGCTGCCCATCTGTGTCCTGATACTGGACCACGAAAGAGTCAAAGGGGCCCTGGGCCACATTCCACAACAGGTGCAGAGAGTCTGGGGTTATGTCGCTCACTGCCAGTGTCCTTAGGTGGGGCCCTTCAGGGAGCTCAGGGGCCTCTGTGGCGGGGCTCCAGGGGGCTGGTGTGTCCACTTCCGGGGCTGTGTGGGAGAAGCCCAGGGGAGAAGCTGAGCAGGGGTGACCAAG a score=147963 s hg19.chr6_ssto_hap7 3345959 4130 + 4928567 CTGCGAGCTCCCGCGCTGT--CTGAGTCAGGTGCTCGCTTCCCCCT-TCCACACCCCGGTGTCCTGCCGAGCCCACCTCGAGATAT---CACAG---GCTCTGGCCCCACCCATGCCGGGATACATTCACT------------------GAGCTTGAGGAGTGTGGTGCTCCCTTCTGAGAGA------------AGCTGAGGGTGGAACTGGCTGGTTGAGGTGACTGGCAAATCCCACCAGCCGTGCCG-----TGG------TCAGGCCTGTCTGAGGTGGGCATCAGCGAGCTCTGGAAGAGGAGCCTGTACCACAAATGCAGCCACTGCTGTTGGTTTCTGTGTCCC-CGCTCATTTTGTTTTCCAGTGATGTTCCTCTTAAG--AAAATGCTCCTGACTCATCCACGGCAGGGAGGTTTGCCGCTATCTGGACAAGGCCACCCTTCGGGGAGGCGACAGCAGCCCCAGC-GAGTAATGAGGAGCAGC-GGCAGTGACGGGGCAGAGTCGGGGCTGGGAGATTAGAGAGCCCCTCCCAGGGCCTTTCCCT--------CCCGCCTGGCCTGGCTCCTGCTCTGGACTCCTTGATGGATGTTGAAGCCCACAGGGCTGCAGACTCCTCCTCCTTCCTGGGGACAGGCCAGGGC--GCCCCACTCCGGCCTGCCCACTCCTGCAGTCATCTTTGTCTTCAGCCCAAATGCACAAGGAAACCCACACAAGCTGGCTTGCTATAGCCAGGCACAGCAGCCTCACCTGTCATTCCCAGGGCAGAGACCGGGCCCAGGCGCTTTCCCCCAAGGAGCCCGTAGAGCAGAAACTTGTATTTCTTGCCAGGCTCCAGGTCCTCTACGGTGACTGTGCGCTGGTCTGCGGCCACAGGCACTGCCCTGGGCTGCCCGTCCGTGTCCCTGTACTGGACCACGAAGGAGTCAAAGGGGCCCTGGGCTACCGTCCAGGACAGGCGCAGAGAGCTGGAGGTCTCCTCAGCCACGGTCAGTTCCCCCAGGTGGGGAG------GTAGCTCCTTCTCCAGGGGAGCTGTGCAGAGGGAGGAGGGAAAGCTCTTAGTCACATGCTGCCTTTGCCTAAGCCCTGGCAGCCTCCCGGAGGTGTGAGGTTCTGGGAAATGGTCCCTCCAGTGTAGCCCCAGGGACAGCTCCTTGAGGAGACACACAGGCCTGCTCCCGCCATGCCCCACAGGAATGAGGGAGAACAGCCCCCTCCTCCTCTGGAGGCTGCTGCCCAAACTCCTTCCTGCCCCGC-CCCTTCCCTGCTGTGATCGAGGATGCGCCAAATTCATTACAGATCATCTCCCGAGGGATGGGTGGCTGGGGGTGCAGAG-AGGGCCTTTGTTTA-CCCTGACCCCCAGCCCCT-GAGCAGGAATGAGGCCAGAGCTGAGAGAGACTCCCCGGAGGTCTCTGGGTTGTCACGGAGACACCCC-AAACATCGAGAGCTGGTCTGGGCAGCCGGCCAA---TGCACGGCTCCCATCACTGCCAGGCTGTGATCTCCCCCTTGTCCCCTTGTGGCCATCAGCCTGAACATCCGTGCCTCCTGCTTCCCCAGCCCCACACTGACCCCACTGGGCCGGGGCAGCCAGGGTGGGGCAGGGAGAAGACAGGG--GATTAGCTGGGAGAACAGAGGGCAGAGCAGAGGCTTGCCCGGGTGGGGCTGGG-----GCCGATGG-------GTGGGGATCTGTACCCCGTCCCCACAGTGAGGGTTTGGGAAGAGAATTACGGAGTCCCAGGGACCCAGGCCCAGACTGGCCGGCTGCTCTGTCCTCCTCTGGGCATAGTGACTCATGGTCCTGGGAGTGGGGTGAGGGTCGGTGACCCACC-ACACCCCTTCCTCAGGGAGCTGAGTCATAGGCATAGTGACACCAGGTTTTTCCATCGTCTTTCCATAGCCAAGCCCTCCCTTTTCTTCCACCCCTCGGCTCCGAGTCAGGGAGGAGGGAGGAGGATGGGAACCACTACTGAGTCCAGCGCCATTCCCAGcat---tatgcaggtgaggacactgaggtcc-cggggatgaagcggcttgtccatggtcaccctggcaaaggctaggactggaactggaacacagatctgc-tggccccaaagcccgtgtcccttttatttcctcaGCAGTCAGCgaatgaaaggaagtaatgcatatgc------ttcagaactgtgcctgacacac-agagggactcaCTTTCGGAGTTAAGATGGTTG----------TGTCAGGGCTGATAGAGGGAATCTCACGGGAAGGCTG--CAGGGCCAGCTCTGAGGGCTCGGATGAGAGGCAGCTCTGGAAAAGGTGGAG-GCTGGACTGGGACTCACCTGTGGTGCTGTCAGCAGAGATGGGGCCCAGTCGTTTCCTGCCTGACAGACCATAGAGCAGGAACCTGTATTTCCTACTGGGCTCCAGGCCCTGGACTGTGACCTCCCGCTGGTTGGCTGCCACCGGCACCACCTGGAGCCGACCATCCTTATCCTTGTACTGGACCACGAAGGAGTCGAATTCGCCCTCAGGGACCGTCCACGAGAGGCCCACGGAGTCAGGGGTCGCATCTGTCACAGTCAGCTCCCCCAGGCGGGGAGACGGTTTGGTGTCTGGGGCTGGAAAAGACAGTGAGGTGCATGGAGAGT----GGGATGGAGGCAAAGGGGCCACGGAGCTTCCT-GGGCTGCTATGGCTCTGTGAGCCGGTCCCAGGAAC---GGGAGGGTGACTGGGCC------------------------AGGAGTAGGAATAAAAGAGGAGCCAGACAAGAAAGCAAGTGTCCCCTGGGGTGCAGGGAAAGTAGGGAGAGGGATGAGTGTGAGTGGGA--GAGGAGAGCTCAGGGCCTGGGTTTTCCTGGACCCAATAAATCAGTGGGTGCTGAGGAC-------TGGAGTGTGGGGCACAGAACGTGAAATTCCAACAGGTGCCACAAGGGGGCGAAGGC---TCTGGCCGCG-----------GGAGGCCTCCAGCCCTCACTCACCGGTCCTGGCCTCCACAGGGACTGGGCCGTGGCGTTTCCCATTCTGGAGTCCAAAGAGCAGGAACTTGTACTTGCGGGCCGGGTCCAGCCCCGAGACGGCGACCGCTCGGAGGTCTCCGCTCACAGGCACTGCCTGGGGCTGCCCCTGCGCGTCCCTGTACTGTACCAGGAAGGAGTCAAAGGGGCCCTGGGCCACCGTCCATGAGAGGCCCACTGAGTCCGAGGTCACGGCCGCCACCGCCAGCTCCCCCAGGCGGGGCTCCACCGGCAGTGGTGTGGGCAGGGGCGCTGAAA-AGAGCAGAGCAGGCCCATGGGTCAGGAGGCAGGACCCTGCGCAAGGGAGGCAGTGCTCTCCCAGGAC--TGGAGTGAGCATTTCTTAGCGGCCTCCTCTAAAACGCTTGTTTTAGAATCtgtgccctgcattgctgtaagcagctcacaaacagtggtgcatttaaccctcgcacaacatatgaagtgggtgccattattatcatcaccccaactttgcaggaatctgaagcaca---aggttaggaaacgcctgcaaagtcgcacaatcactacattcgaaggcacatgcagatctgggcagctggatctgaagcactt---------------------------------tctgagccactaAAATACTCCTTAAGGGAGCCTGAAGACTAACAAATGAGCACACGAGCAACATGGAGGTTCCAGATCACAATGGGAGAAGGA-AGCTACAACAAACAGGGCATGGACTACCTGCCCATCTGACTCCACACAGTCTCCATGAATCC----------AAGGATGAGGCAGGATCATTAGCAACATGGGAGAAAAGACAGAAACCTAGAGGCCCAGTCAAAAGAGGTGCCAAGATCCAAAGGAGAAACACAAGGGGGCTGCAGAGGTAAACCTGGGGACGAGGGCCTGTCCCCCCACTCACCCGTGATGCCCACGGTGGACACTGGGCCCACGCGCTGCCCCTCGTGGAGGCCGTACAGATGCATCTTGTATTTGCGCCCGGGCTCCAGGCCCCCCACGGTGACCTCGCTCTCCTCGCCCCTGACACGCACCACCTGGGGCTGCCCGTCCCTGTCCTTGTACTGCACGGTGAAGGAGTCGAAGCGGCCCTGGGGGACGGTCCAGGAGAGGCTCAGCGAGTCAGGGGAGGATCCTGTCACTGTCAACTCCCCCAGGAGCGGCTCCTCAGGGGCCTCCGGGGCCTCAGTGCTGGGTTCTGTGGGGCTGGGGGTCTCTTCC---------------------------TCTGCAGTGGAGAAGGAG s canFam2.chr12 4460309 4078 + 75515492 CCGTGAGCACCAGCACTGTGGCCCCATCAGATACTTGCTTCTCCTTCTCCTCCTCCATGTATTCTGGGTGTCTCATCTTGAGGTGCGTGCACAGCCTGCTCCCTCCCCA-CCATGTCTGGGTGCCTATGCTCCTGGCCCAAGGCAGGAAGAGCTGGGCGGGGCATGTGGTCCAGGGCGGTGGAGTGGGGGTGCATAGCTGAGGACGGAGCTGGCTGGTAAACTGGAAGGGCAGATCGCACCAACCAGGTCGGCCGATGGGCCCCATCCTGCTGACCTCAGCTGGGTGTTAAT-AACTC-----------CCAGCTCCATCACTGTAGCCACTTC---TGGTTGCTACGCCCCTCACCTATTTTCTTTTCCAGTTATTTTCCACTTGGGAAAAAATGCTCCTGACTCATCCACAGGAGGG-GGTTTGCCCCTATCTGG-CAAGGCTG-CCTGCGGGGAGGTAAGAGCTGCCTCAGTAGAGTGA-GGGGAACAGCTGGCAGTG-CTGGGCAGCATGGGGGCTGGGAGA-CAGGGGACCACTGCCAGGGCCTTTCCTTGTGCCTGCCTTGGCTGCCCTGGCTCCTGCTTTGGA--------------------------------TGGACTCCTCGGGTTACC---------ATCGGAGCTGGCCCCACTGCACCTCCCTTCCTCCC-----------------------------------AGGCCCACTCATG----------------------------CTCACCTGTCACTCCCAGGACGGAGATGGGGCCCAAGTGCTGTCTTCCGTGGATCCCATAGAGCAGGAATTTGTATTTCCTGCCAGGCTCCAGGCCCTGTATGGTGACGTCCCGCTGGTCTTTGGCCACAGGCACTGCCCGGGGCTGCCCAGCTGGGTCCCTGTACTGGACCACAAAGGAATCAAAGAGGCCCTGGGCTACCGTCCATGAGAGGCTCAGGGAGTTGGAGGTCTCATCTATCACTGTCAGCTCTCCGAGGCGGGGTGGGTGCTGCTGCTCCTTCTCCAGGGGAGCTGTAAACAGAGTGGGAGGAGAGACCTTAGTTAAGAGCTACCAGC-----AGCCCTGGCAGCTTCTCGGAGACATGAGGGTCTAGGAAAGGGTCCCTGCACTGTGGCTTCAG--------------------------------------TCTGCCTGAAAGGAAGAAAAGCGAGCAGCTTGAT-CTCTGCTGGAGGCCACTGCC----------CCTGCCCCCCTTCCCTCCCTGCTGTGATC-AGGGTGCAGTAAATGCAGAGAAGATCACCTTGTGAGACA-GTGTCCCTGGGGGTGTAGAGAAAGGCCTCAGTTTCTCCCTGGCCCCTGATCCCTCGAGCAGGAG-GTGGCCAGAGCCGAGAAAGGCTCCCAGAGTGTATCTGGGTTGTCAGGGAAACACCCCTAAACACTAAGAGCTGGGCTGGGCAGCCAGCCAAGCTTGTG-GGCTCCCAT---GGCTTGGCCATGACCTCCTCTCTCTT--------GCTATCAGCCTGGGCCATCCTCCCACCCACTT-TCCAGCCCTCCACTAACACCATTGGACCAGGG----CAGGGTTGGCAGGGGGGCAGCCGGGGTAGAACAAAGAGGAGAGCAGAACACAGAG--GAGACCTGCCCTGGCGGGGACAGGCGTTAGCTGATGGGGTCAGAGGAGAAGCCTGTATTCAGTGCCCATAATGAGGGTTT--------------GGAGTCTGAGTGTCCCAG-------CTGACTGTGTGCCCCATCCCCATCTGGCCAGGGTGACTCATGGTCCTGGGAAGGAGGTAAGGGTCAGTGACCCACCTCCACCCTTTCCTCAGGGGGCTGAGTAATAGGCACAATGACTCCAGATTTTTCCATAGTCTTTCTACAGCCAAACCCTTCCATATTTTCCACCTCCTGCCTC--GGCTGGGACAGAGGGA--AGGACTGGAACATTTATTAAGTGCTGATCCATATTTATTATGCATATGCAGGTATAGTAACTGTGGTTCGAGGGAAAGAAGTGGCTTGTCTGTGGCCACAC---CACCGGC---AATTGGAATTTGAACATGGTTCTGCTTAGCTCTAAAGACTGGATTCTTTTTATGACATCAGCAGTCAGTgaatgaagggaa-taatgcacatataaaatacttagaatagagcctggcacgtgatggaggctcagt----------aaatgtttgctcttgctGCCATAAAGGCTGAAGGCAGGGAT---------AGGCCGGTGGGGGGCAGCTCTTGGGGCTTAAGTCAGAGGCAACTCTAGAAAACATGGGGTGCAAGGCTGGGGCTCACCTGTGCTGCTGTCGGCAGAGATGGGGCCCAAGCGCTTCCTGCCCGCCAGCCCGTAGAGCAGGAACCTGTACTTCCTGCTGGGCTCCAGGCCAGGGATGGTGACCTCACGCTGGTCTGCGGACACAGGCACCCCCCGGGGCTGCCCATCCCTGTCCTTGTATTGGACCACGAAGGAGTCGAATTCGCCCTCGGGGACCGTCCACGAGAGGCTAATGGAGTCTGGGGTCACGTCTGTCACTGTCAGCTCCCCAAGGCTGGGA---GGTTTCGTGTCTGGGCCTGGAGTAGAGAGAGAGGTGTATGGAAAGTGACAGAAATGGTGACAGA-AGCTGGCAGAGCTTTGTCAGGATGCTAGGGCTCTGGGAGCTGGTTCTGAGAGCTGGGAGGGGGTGGCTAGGCCACCTGGCAGGAAGCAGGCCAGCAGAGGAACAGGGA-AAAAGATGAACCAGGTTAGCCAGC-AGCATCCCC-AGGATGTAGGACAAGTAGGGAGAAGGATGGGAACGAGAGGGGTCATGGGGAGCTCTGGACCTGGTGTTTACTGGACCCAGTAAATAATCAGGTCAGGAGGCCCCAGCTTTGGAGCTTGGAGCATAGAA-ACAGGACACTAATTGCCACCACAAGGGGGTAAAGGCCTGTCTGGAGGCACAAGCACCCATGAGGGCCTCCAGC-----ATCACGCGTCTTTGTGTCTACAGACACAGGACCATGGCGTTTCTCATCCTGGAGCCCGAAGAGCAGGGACTTGTACTTGCAGG-TGGGTCCAGACCCGAAATGGTGATCTCGCGAAGGCCTCGAGCCACAGGCACCACCTGGGG-TGCCCCTGCACATCCCTGTACTGGACCA-GAAGGAGTGGAAGGGGCCCTGGGCCACCGTCCATGAGAGGCGCACGGTGTCAGAGGTCACGGTGGCCATGGCCAGCTCCCCCAGGCCGGGGGCTGCGGGGGGCTCTGTGGGCAGAGAGGCTGGAACAGAGCGGAGGAGGCTGATGGGTCAAT-GGTGCGACCCTTCGAAAGAGAGAGAGTGCTTTCCCGAGGCTATGAAATAAATGTCTTGtagcaagctcttctaaagtgctt-------agtgcatcccaggcgtggctgtgagcgcttcacacacaggcacgag---gatcctcccacaaaatatgaagtacgtgcctctagtattgtcattgccactatgtgtggatctaaggcgcagagaagttaagatacggtcg-gaattcacacagtcagtg-gttcagagcaggattcaaacccagAGACGTGGTTCTGCAGCCACTAAAGACCAGAGCCACTGCAGACCAGAGACGTGGTCTGAGTCACTAAAATACCCAGTCCGGGAGCCTGAGAGGCCGTATATGAATATTTCAACAAGTTTAATGTTGCTGATAAGAAAGGAAAGTGGACAGGTA-AATTTATGAAGTGAAGGGTACCTGCCAA-CTAAGCCTGAACAGTCTCC-TACATCCTTCATGAGTAAAGGATGAGGAAGGAT-ATTAGTGCCACATGAGAAAAGAGAGGGACCTAAGGGACGATTTGTGAGG-------------AAAGGAGGAAAGCAAGA----CAAAACAGGAGACTTAGGAGACAGGGTGCTCGCTGTCACTCACCGGTCAGGCCCACGGTGGACACGGGGCCCATGCGCCGCCCCCTGTCCAGGCCATACAGGTGCATCTTGTACTTGCGTCCCGGCTCCAGACCCCCAACGGTCACCTCACTCTCGTCGCCCGGGACACGCACCACCTGGGGCCGCCCATCCCTGTCCTTGTACTGGACAGTGAAGGAGTCAAAGTGGCCCTGGGGGACGGTCCAGGAGAGGCTCAGGGAATCTGGGGAGGATCCCGTCACCGTCAGCTCCCCCAGGAGGGGCTCCTTGGGGGGCTCTGGGGCCTCTGTGCTGGGTTCTGTGGGGCTGGGGGTCTCCTCCACCTCGGTGGGGGTTGGCGTCTCTTCTTCTGCAGCTGAGAAAGAG a score=34779 s hg19.chr6_ssto_hap7 3350092 724 + 4928567 GAGAGAGTGA------------GGGGGATGTCCTTGGGTCCTGGGGAAAAGGAGGGAGAAGCCAAGGCTATGACTGGGGGACCTGAGGTCATTTCAGAGAAGTCCATTCTTGGGGCTGGGTGGTCCTGCTCAGCTGACAGCTAACACACGTAACAAG---TTCCAGGGTCAGCTGTGGGGGACCTGGCACAGCCACCAGCACAGC-----AAAACTCCTGATGGCCCCTCCCTGCTCAGGGGGAGCCAGGGGTCAACCACATAGGAAGGCCCAAGGGGAGTCCCAGCCCCAGCCACAAGCAGTTCTGTGGTGCTGACCAGACCCCTGTCCCATTCCCCAC-CAGTCATCACCAAAGAGCAAGAGGTGGCCCTCCCACAGCTCCCACCCTGGGGCTCCCATCATTCACTCACCCGTCACCCCAATGGCAGACACAGGGCCTACGCGCTGGCCACCGTGGAAGCCGTACAGGTTCATCTTGTATTTATGGTCTGGCTCCAGGCCTGAGATGGTGACCCCGTCCTCGTGCCCCGGCACCCGCACCGCCTTGGGCTGCCCATCCCCATTCCTGTACTGGACCAGGAAGTGGTCAAACTGGCCCTCGGGAACCATCCAGGACAGGCTGAGGGAGTCGGGGGTGGCATCTGTCACGGTCAGCTCCCCCAGGCGAGGCTTGATGGGGGGCTCAGGGGTCATGGTAGGCACTGCTTGGGTGGTCTCGGCTTCATCCTTTGGAGCTGGACAGAC s canFam2.chr12 4464394 704 + 75515492 GAGAGGGTGAGGCAGGGTCCCCGGGAGACATCCTCAGGTCTT-AGGAGAAGGATGGAGAAGCTGTGACCGGGTCTGGGGGCTCCCGATTCAGTTCAGTGAAGCCCATCCTCGGGGCTGGGTGGGCTTGCTCAGCCCACATCTCACAAACATGCTGGGAGCCTCCAGGGTCAGCCATGGGGAAGCCTGTCCAGCCACCAGCACAGCTCACGGAGGCCC------GCCCTTCTCTGCATGGGAGGACCC---------CCTC-------GGTCCTCAGGGAGCCCCAGCGGGGG-----AGCACCT---------TGAGCAGAAGGGCCTCCTGCACCCCACTCACCCATTACCTGAGAG---AGGGGGGTCCTGCCACTGGCCCAACCCTGAGGCTTCCACTGGCTACTCACCTGTCACCCCAATGGCAGAGATGGGGCCCATGCGCTGGCCACCGTGGAAGCCATACAGGTTCATCTTGTACTTGTGGTCTGGCTCCAGGCCTGAGATGGTGACCCCGTCTTCATGCCCTGGCACCCTCACCGCCTTGGGCTGCCCATCCCCATTCTTGTACTGGACCAGGAAGTGGTCAAACTGGCCCTCGGGGATGGTCCAGGACAGGTGCAGGGAGTTGGGGGTGGCTTTGGTCACTGCCAGCTCCCCCAGGTGTGGCTTGATGGGAGGCTCAGAGGACATGGTGGATGGGGCTTGGGTGGTCACAGCTTCATATTCTGGAG-GGGACAGAG a score=289 s hg19.chr6_ssto_hap7 3350816 7 + 4928567 ACGTGTG s canFam2.chr12 4464387 7 + 75515492 ACACATG a score=15950 s hg19.chr6_ssto_hap7 3350823 1080 + 4928567 GGGACAG-TGAGGACCCTGGGTTCTCAGTTCAGCATAGAAAGGATGTGTCACAAAACACAAAGTGCCCAAGAACAGGACGATGCTGCCCACAGCGCCTCCAGCACAGCTCTTCATCCTCTCCTCCCCTGCGGCCT----TTCCTATCCCTCACCCTGACCCCCCTGCCCTCGGCCCCCACCTCACCCCCACCTCCCAACACCCAGGCCACCTCTCCCTGTCCCTCCAGCACCGCCTCTCTTTTGAGCACAGCTCCACTTGGCCTCTGCACCCTTACCCTCCCTGCACTGGGGTCTCCTCGCCATCTTTTGTTCACTGGGCTTCTGTCTTTGCTCTG-CAACAAGCTCAGCACACTCCTCCCGAGGCCAGAGCCTGGGGTGTGTTCCTGGACCCAGCC--CCTCACCAGCTGCCAGCAGCCTCAGAGTTACC--------------TCTCCCCCGAGTTTCCCTGGATACCTtcctccccaacctccagtcc-----ccgatcctagtttgagccactgtcacctctcaccagggccaccaactgcctattggcttccctgcctctagg--ctccctg---ccacccCATCCCCATCTTTAGCCCCCACAGATGAG--CTTCA---CACAGGCACAGCTGCTGGGGCCATCTCAGCACAGACCTGGGCAATCA-CATCCTCATCCCTGGGA-GACCCCAGGCCTCCT---CTGCTCCCAC------------ACTTCAGGACTATCTATTCACTGCAAAGGACACCCCACTCAATCCT--CAGTACTTCTCACA---CACCATGCTCTTTCTAGCCTCCTGGCCTTTGCACCACCTGT---GCTGATCTGACACGCTTCACCTTCTCTCTAAAGCTGTCACCAAGCTAAGGCCTGCCTGGCCTCAGATCCTGACTGTCCCCTGAGTATCCACAGGTAGGGTGGTTTAGGTATTCCTGCCTGGCTCT------------GGGCTTCTTGTCACATGCTCACCCGC------------------Ctttgctttcttactggtccacagcctgtc-ccccatg-acgttagccccattaggacaggaacttttCCCATTAGGACAGGAACCCTAACTCTGAGCCTAACCTCTGTGAGGATTCATGAATGCAAGAAAAATTCGCTTCAACAAATTCTAA s canFam2.chr12 4465105 1035 + 75515492 GGGACAGATGAGGA-------TGTGCAGGTCAGCCTCT-AAGTAGGTGTCTAGAAAAATAAGATCATAAGGAGCAGAGCATTGCCACCCACGGCGGCTCTAAC--------TCATCCACTCTTCCCTTAATGTCCCAGGTTCCTGT-------GTTGGCCTTCTGGGCGCATATCCTCATCTTGCCCTGCCCTCCC----------CTGCCCTTCCCCTGCCCACTG-------CTCTCTTCAGTACCCACCTCC-CCTGTATCCTGGGCCCTAGACCTCCCTTCCCTGGGGTCTCCTTGGCATCTCAC-TCCCTTTGGCTCATGTGTTTGCTCAGACCCCAAACAC--CTCACCTTTCCCCAGCCAGGACGCTGGAG---GCTTCCTGGCTCTGTCTGCGTCCCCAGCTGCCATCAGACTCAGAGTGTCCAACCCACTCCTAAGTGCCTCCTGAGCTCCCC---ATACCTGTAGCCCCACCAGCCTGCCTTGGGGCCAATCCCAGT-------GCTGTCGCCTGCCACCTGGGTCACCACCTCCCCCCTGGGCTCCCTGCCTCCCTGTTCTCCTTGTGCCCACCCGTTCCTCACAGGGGGCC----AGGATGAGCCCTTCAGTGCACAAGGGACGGCACTGGGCTCAGCTTAACAT-------TGCAACAACCGTCTCCATCCCCAGGAGGAGTCCCTGCCTTCTGAACTGCTCCTACTGCTCTACCCCTGTCTCAGGACTCTTTCCCCCACTCAGAGGATCTCACACAAAATCCTCCCAGTCCCTCTCAGGGGCCACCATGATC---CTAGTTTCCAGGCCTTGGCACCAGCTGTGACGTGGATCTGA---------------CTCTAACGCTGTCACCAAGCTAACACCTTCCC-ACCTTGGGTCCCAGCTGTCCTGTGGGTACCT---GGCAGGCTGGCTCAAGCGTG-CTGCCCGGTCCTGGCCCGGCCCCAGGACCTCCGGacacacacacacacacagacacacacacacacCTCTTTGCCTGATGGCTGGTTCGCAGCCTGACTCCCCATGCCCGGGAGCCCTAGTATAATAAGAACTTTC----------------------------------TCTCTGCCATGATC--------------AGGTTCACTCCAGTGAACTCCAG a score=24180 s hg19.chr6_ssto_hap7 3353092 379 + 4928567 GGAGAGACAGCAGTGTCTTCCAGGGCCATCTTCCCCACCTCGCCTC-------ACTCACACTTACTCACCTGTCACACCCACAGCGGACACTGGGCCCACGCGCTGCCCCTCGTGGAGGCCGTACAGGTGCATCTTGTATTTGCACCCGGGCTCCAGGCCCCCCACGGTGACCTCGCTCTCCTCGCCCCTGACACGCACCACCTGGGGCCGCCCGTCCCTGTCCTTGTACTGCACAGTGAAGGAGTCGAAGCGGCCCTGGGGGATGGTCCAGGAGAGGCTCAGCGAGTCAGGGGAGGATCCTGTCACTGTCAGCTCCCCCAGGAGCGGCTCCTCAGGGGGCTCCGGGGCCTCCGTGCTGGGTTCTGTGGGGGCGGGAGTTTCTTCC s canFam2.chr12 4466913 386 + 75515492 GGACACTCTGGAGGCTCCACCAATGAGACTTTACCCAGCCCAACCCTGAAGGTCCCCGCCGTCACTCACCGGTCAGGCCCACGGTGGACACGGGGCCCACGCGCCGCCCCCTGTCCAGGCCATACAGGTGCATCTTGTACTTGCGTCCCGGCTCCAGACCCGCAACGGTCACCTCACTCTCGTCGCCCGGGACACGCACCACCTGGGGCCGCCCATCCCTGTCCTTGTACTGGACAGTGAAGGAGTCAAAGTGGCCCTGGGGGACGGTCCAGGAGAGGCTCAGGGAGTCTGGGGAGGATCCCGTCACCGTCAGCTCCCCCAGGAGGGGCTCCTTGGGGGGCTCTGGGGCCTCTGTGCTGGGTTCTGTGGGGCTGGGGGTCTCCTCC a score=1470 s hg19.chr6_ssto_hap7 3353471 23 + 4928567 TCTGCAGCTGAGAAGAGGGGACA s canFam2.chr12 4471423 23 + 75515492 TCTGCAGCTGAGAAAGAGACACA a score=48044 s hg19.chr6_ssto_hap7 3353494 1261 + 4928567 GAGAAGGTGAGGCAGCTTCCCTGGGGGATGTCCTTGGGTCTTGTGAGGAAGGAGAGCGAAGCTGTGGCCATGAGTGGGGGTCCTGGGGTCAGCTTGGAGAGGCCCATCTTTGGAGCTGGGTGGTCTTGCTCAGTTTACAGTCAACACACATGACAAG---CTCTGAGGTCAGTGCTGGGGAACTTGGGACAGCCACCAACAGAGCTCACAGGG-----CCCTTCTCCACCCAGGAAGATCTG-TCAGTCCTCAGGGA-----AGTGGGGAAAGACAAAAAAGTACCATGGCTCAGCCAAGAGCAGAGGGGCTTCCTGGGCCA-GTTCACCCATCACCAGAGAAAGGGAGACCCTCCCACAGGCCCCACTCTGGGGCTCCCATCGTACACTCACCTGTCACCCCAATGACAGAGATGGGGCCCACGCGCTGGCCACCGTGGAAGCCGTACAGGTTCATCTTGTACTTGTGGTCTGGCTCCAGGCCTGAGATGGTGACCCCGTCCTCGTGCCCCGGCACCCGCACCACCTTGGGCTGCCCATCCCCATTCCTGTACTGGACCAGGAAGTGGTCAAACTGGCCCTCGGGGACCATCCAGGACAGGCTGAGGGAGTCAGGGGTGGCATCTGTCACGGTCAGCTCCCCGAGGCGAGGCTTGTTGGGGGGCTCAGGGGTTGTGGTGGGCACTGCTTGGGTGGTCTCTGCTTCATCCTCTGGAGCTGGACAGACACGTGTGGGGAGAG-TGAGGTCCCTGGGTTCTCAGTTCAGCATAGAAAGGATGTGTCACAAAACACAAAGTGCCCAAGAGCAGGACGATGCTGCCCACAGCGCCTCCAGCACAGCTCTTCATCCTCTCCTCTCCTGCGGCCT----TTCCTATCCCTCACCCTGACCCCCCTGCCCTCAGCCCCCACCTCACCCCCACCTCCCAACACCCAGGCCACCTCTCCCTGTCCCTCCAGCACCGCCTCTCTTTTGAGCACAGCCCCACTCGGCCTCTGCACCCTTAGCCTCCCTGCACTGGTGTCTCCTCGCCATCTTTTGTTCACTGGGCTTCTGTCTTTGCTCCG-CTACAAGCTCAGCACACTCCTCCCGAGGCCAGAGCTTGGGGTGTGTTCCTGGACCCAGCC-CCTCACCAGCTGCCAGCAGCCTCAGAGTACC---------------TCTCCCCCGAGTTTCCCTGGATACCTTCCTCCCccacctccagtcc-----ccaatcctagtttgagccactgtcacctctcaccagggccaccaactgcctactggcctccctgcctccaggct s canFam2.chr12 4464394 1224 + 75515492 GAGAGGGTGAGGCAGGGTCCCCGGGAGACATCCTCAGGTCTTAGGAG-AAGGATGGAGAAGCTGTGACCGGGTCTGGGGGCTCCCGATTCAGTTCAGTGAAGCCCATCCTCGGGGCTGGGTGGGCTTGCTCAGCCCACATCTCACAAACATGCTGGGAGCCTCCAGGGTCAGCCATGGGGAAGCCTGTCCAGCCACCAGCACAGCTCACGGAGGCCCGCCCTTCTCTGCATGGGAGGACCCCCTCGGTCCTCAGGGAGCCCCAGCGGGGGA----------GCACCTTG-----------AGCAGAAGGGCCTCCTGCACCCCACTCACCCATTACCTGAGAGAGGGGGGTCCTGCCACTGGCCCAACCCTGAGGCTTCCACTGGCTACTCACCTGTCACCCCAATGGCAGAGATGGGGCCCATGCGCTGGCCACCGTGGAAGCCATACAGGTTCATCTTGTACTTGTGGTCTGGCTCCAGGCCTGAGATGGTGACCCCGTCTTCATGCCCTGGCACCCTCACCGCCTTGGGCTGCCCATCCCCATTCTTGTACTGGACCAGGAAGTGGTCAAACTGGCCCTCGGGGATGGTCCAGGACAGGTGCAGGGAGTTGGGGGTGGCTTTGGTCACTGCCAGCTCCCCCAGGTGTGGCTTGATGGGAGGCTCAGAGGACATGGTGGATGGGGCTTGGGTGGTCACAGCTTCATATTCTGGAG-GGGACAGAGACATACAGGGACAGATGA-------GGATGTGCAGGTCAGCCTCT-AAGTAGGTGTCTAGAAAAATAAGATCATAAGGAGCAGAGCATTGCCACCCACGGCGGCTCTAAC--------TCATCCACTCTTCCCTTAATGTCCCAGGTTCCTGT-------GTTGGCCTTCTGGGCGCATATCCTCATCTTGCCCTGCCCTCCC----------CTGCCCTTCCCCTGCCCACTG-------CTCTCTTCAGTACCCACCTCCCCT-GTATCCTGGGCCCTAGACCTCCCTTCCCTGGGGTCTCCTTGGCATCTCAC-TCCCTTTGGCTCATGTGTTTGCTCAGACCCCAAACACCTCACCTTTCCCC---AGCCAGGACGCTGGAGGC-TTCCTGGCTCTGTCTGCGTCCCCAGCTGCCATCAGACTCAGAGTGTCCAACCCACTCCTAAGTGCCTCCTGAGCTCCCC---ATACCTGTAGCCCCACCAGCCTGCCTTGGGGCCAATCCCAGT-------GCTGTCGCCTGCCACCTGGGTCACCACCTCCCCCCTGGGCTCCCTGCCTCCCTGTT a score=8219 s hg19.chr6_ssto_hap7 3354755 472 + 4928567 ccctgccacccCATCCCCATCTTTAGCTCCCA-------CGGATGAA--CTTCA---CACAGGCACAGCTGCTGGGGCCATCTCAGCACAGACCTGGGCAACCA-CATCCTCATCCCTGGGA-GACCCCAGGCCTGGTGAGTGGTCCCCTCCTCTGCTCCCACACTTCAGGA-TGATCCACCAACTGCAAAGGACACCCCACTCAAtcctcagtgtctctcaca-----caccatgctctttctagcctcctggcctttgcactagctgtgat---gatttgacatgcttcacttcctctccaaagctgtcatcaagctaaggcctgcctggcctcaggtcctggctgtcccctgggtacttgtgggcagagtgacttcactgtcccttcccaatcctggcttggctcctgggctc-----------------------cacatgctcatccttctttgcttactttccggttttctgcttg--tgcccacaattgtgagccccatgaaaacatgaactt s canFam2.chr12 4476850 483 + 75515492 CT------CCTTGTGCCCACCCGTTCCTCACAGGGGGCCAGGATGAGCCCTTCAGTGCACAAGGGACGGCACTGGGCTCAGCTTAACAT-------TGCAACAACCGTCTCCATCCCCAGGAGGAGTCCCTGCCTTCTGAACTGCTCCTACTGCTCTACCCCTGTCTCAGGACTCTTTCCCCCACT-CAGAGGATCTCACACAAAATCCTCCCAGTCCCTCTCAGGGGCCACCATGATC---CTAGTTTCCAGGCCTTGGCACCAGCTGTGACGTGGATCTGA---------------CTCTAACGCTGTCACCAAGCTAACACCTTCCC-ACCTTGGGTCCCAGCTGTCCTGTGGGTACCT---GGCAGGCTGGCTCAAGCGT-GCTGCCCGGTCCTGGCCCGGCCCCAGGACCTCCGGacacacacacacacacagacacacacacacacCTCTTTGCCTGATGGCTGGTTCGCAGCCTGACTCCCCATGCCCGGGAGCCCTAGTATAATAAGAACTT a score=68783 s hg19.chr6_ssto_hap7 3356328 1623 + 4928567 CACTCACCTGTCACACCCACGGTGGACACCGGGCCCACACGCCGCCCCTCGTGGAGGCCGTACAGGTGCATCTTGTATTTGCGCCCGGGCTCCAGGCCCCCCACGGTGACCTCGCTCTCCTCGCCCCTGACACGCATCACCTGGGGCCGCCCGTCCCTGTCCTTGTACTGCACGGTGAAGGAGTCGAAGTGGCCCTGGGGGATGGTCCAGGAGAGGCTCAGCGAGTCAGGGGAGGATCCTGTCACTGTCAGCTCCCCCAGGAGCGGCTCCTCAGGGGGCTCCGGGGCCTCAGTGCTGAGTTCCGTGGGGCTGGGGGTCTCTTCC---------------------------TCTGCAGCTGAGAAAAGGAGATATAGAGAGGATG---CCAGGTGCCTGGGGGATGTGCTCAGGTCTTCAAGGGAAGGAGGGAGAAACCATGGCCACTACTGGGTATGTGAG-------GTCATTTCAGAAAAGCCCATTCTTGGGGCTGGGTGGTCCTGCTCAACTGACAGCTAACACACATGACA--AGTTCCAGGGTCAGCTGTGGGGGACCTGGGACAGTCACCAGCACAGC----AGAACTCCTGATGGCCCCTCCCTGCTCAGGAGGAGCCAGGGGTCAGCCTCAGAGGAAGGCCCAAGGGGAGCCCCAGCCACAAGCAGGTCTGTGGTGCTGACCGGACCCCTGGCCCATTCCCCAC-CAGTCATCACCAAAGAGCAAGAGGGTGACCCTCCCACGGCTCCCACCCTGGGGCTGCCATCATCCACTCACCCGTCACCCCAGTGACAGAGATGGGGCCCACGCGCTGGCCACCGTGGAAGCCGTACAGGTTCATCTTGTATTTATGGTCTGGCTCCAGGCCTGAGATGGTGACCCCGTCCTCGTGCCCCGGCACCCGCACCGCCTTGGGCTGCCCATCCCCATTCCTGTACTGGACCAGGAAGTGGTCAAACTGGCCCTCGGGAACCGTCCAGGACAGGCTGAGGGAGTCAGGGGTGGCATCTGTCATGGTCAGCTCCCCCAGGCGAGGCTTGATGGGGGGCTCAGGGGTCATGGTAGGCACTGCTTGGGTGGTCTCGGCTTCATCCTCTGGAGTTGGACAGACACGTGTGGGGACAG-TGAGGTCCCTGGCTCCTCAGTTCAGCATAGAAAGGATGTGTCACAAAACACAAAGTGCCCAAGAGCAGGACGATGCTGCCCACAGCCCCTCCAGCACAGCTCTTCATCCTCTCCTCTCCTGCGGCCT----TTCCTATCCCTCACCCTGACCCTCCTGCCCTCAGCCCCCACCTCACCCCCACCTCCCAACACCCAGGCCACCTCTCCCTGTCCCTCCAGCACCGCCTCTCTTTTGAGCACAGCCCCACTCGGCCT-CTGCACCCCTGGCCTCCCAGCACTGGGGTCTCTTCGCCATCTTTTGTTCACTGGGCTTCTGTCTTTGCTCCG-CAACAAGCTCAGCACACTCCTCCCGAGGCCAGAGCCTGGGGTGTGTTCCTGGatccagct-cctcaccagctgccagcagcctcagag----catctttaccctgaattcccctggataccttcctaccc----cacctccagtcc---------ccgatcctagtttgagccactgtcacctctcaccagggccaccaactgcctactggcctcgctgcctccagg s canFam2.chr12 4475251 1597 + 75515492 CACTCACCGGTCAGGCCCACGGTGGACACGGGGCCCACGCGCCGCCCCCTGTCCAGGCCATACAGGTGCATCTTGTACTTGCGTCCCGGCTCCAGACCCGCAACGGTCACCTCACTCTCGTCGCCCGGGACACGTACCACCTGGGGCCTCCCATCCCTGTCCTTGTACTGGACAGTGAAGGAGTCAAAGTGGCCCTGGGGGACGGTCCAGGAGAGGCTCAGGGAGTCTGGGGAGGATCCCGTCACCGTCAGCTCCCCCAGGAGGGGCTCCTTGGGGGGCTCTGGGGCCTCTGTGCTGGGTTCTGTGGGGCTGGGGGTCTCTTCCACCTCGGTGGGGGTTGGCATCTCTTCTTCTGCAGCTGAGAAAGAGACACATGGCGAGGGTGAGGCAGGGTCCCCGGGAGACATCCTCAGGTCTT-AGGAGAAGGATGGAGAAGCTGTGACC------GGGTCTGGGGGCTCCCGATTCAGTTCAGTGAAGCCCATCCTCGGGGCTGGGTGGGCTTGCTCAGCCCACATCTCACAAACATGCTGGGAGCCTCAGGGTCAGCCATGGGGAAGCCTGTCCAGCCACCAGCACAGCTCACGGAGGCCC-----GCCCTTCTCTGCATGGGAGGACCC---------CCTC-------GGTCCTCAGGGAGCCCCAGC---GGGGGAGCACCTTGAGCAGAAGGGCCTCCTG-----CACCCCACTCACCCATTACCTGAGAG----AGGGGGGTCCTGCCACTGGCCCAACCCTGAGGCTTCCACTGGCTACTCACCTGTCACCCCAATGGCAGAGATGGGGCCCATGCGCTGGCCACCGTGGAAGCCATACAGGTTCATCTTGTACTTGTGGTCTGGCTCCAGGCCTGAGATGGTGACCCCGTCTTCATGCCCTGGCACCCTCACCGCCTTGGGCTGCCCATCCCCATTCTTGTACTGGACCAGGAAGTGGTCAAACTGGCCCTCGGGGATGGTCCAGGACAGGTGCAGGGAGTTGGGGGTAGCTTTGGTCACTGCCAGCTCCCCCAGGTGTGGCTTGATGGGAGGCTCAGAGGACATGGTGGATGGGGCTTGGGTGGTCACAGCTTCATATTCTGGAG-GGGACAGAGACATACAGAGACAGATGA-------GGATGTGCAGGTCAGCCTCT-AAGTAGGTGTCTAGAAAAATAAGATCATAAGGAGCAGAGCATTGCCACCCACGGCGGCTCTAAC--------TCATCCACTCTTCCCTTAATGTCCCAGGTTCCTGT-------GTTGGCCTTCTGGGCGCATATCCTCATCTTGCCCTGCCCTC---------------CCCTGCCCTTCCCCTGC----CCACTGCTCTCTTCAGTACCCACCTCCCCTGCATCCTGGGCCCTAGACCTCCCTTCCCTGGGGTCTCCTTGGCATCTCAC-TCCCTTTGGCTCATGTGTTTGCTCAGACCCCAAACAC--CTCACCTTTCCCCAGCCAGGACGCTGGA--GGCTTCCTGGCTCTGTCTGCGTCCCCAGCTGCCATCAGACTCAGAGTGTCCAACCCACTCCTAAGTGCCTCCTGAGCTCCCCATACCTGTAGCCCCACCAGCCTGCCTTGGGACCAATCCCAGT-------GCTGTCGCCTGCCACCTGGGTCACCACCTCCCCCCTGGGCTCCCTGCCTCCCTG a score=10440 s hg19.chr6_ssto_hap7 3357951 455 + 4928567 ctccctg---ccacccCATCCCCATCTTCAGCCCCCACGGATGAG--CTTCA---CACAGGCACAGCTGCTGGGGCCATCTCAGCACAGACCTGGGCAACCA-CATCCTCATCCCTGGGA-GACCCCAGGCCTGGTGAGTGGTCCCCTCCTCTGCTCCCACACTTCAGGATGAGATACTCACCGTAAAGGACACCCCACTCAATCCT--CAGTGCCTCTCACGTGCCATGCTCTTTCTAGCCTCCTGGCCTTTGCACCAGCTGTGAT---TATCTGACACACTTCACCTTCTCTCTAAAGCTGTCACCAAGCTAAGGCATGCCTGGCCTCAGGTCCTGGCTGTCCCCTGGGTACCCATGGGCAGGGTGACTTAGGCGTCCCTGTCTGGTCCTGACCTGAGCCCTGGGCCTCC-----------------CTATCACATGCTCACCCGCCTTTGCTTCATTTGCTGGATTGCAGCCTGTCTCTCCATG s canFam2.chr12 4465618 455 + 75515492 CTCCTTGTGCCCACCCGTTCCTCA----CAGGGGGCCAGGATGAGCCCTTCAGTGCACAAGGGACGGCACTGGGCTCAGCTTAACAT-------TGCAACAACCGTCTCCATCCCCAGGAGGAGTCCCTGCCTTCTGAACTGCTCCTACTGCTCTACCCCTGTCTCAGGACTCTTTCCCCCACTCAGAGGATCTCACACAAAATCCTCCCAGTCCCTCTCAGGGGCCACCATGATCCTAGTTTCCAGGCCTTGGCACCAGCTGTGACGTGGATCTGA---------------CTCTAACGCTGTCACCAAGCTAACACCTTCCC-ACCTTGGGTCCCAGCTGTCCTGTGGGTACCT---GGCAGGCTGGCTCAAGCGT-GCTGCCCGGTCCTGGCCCGGCCCCAGGACCTCCGGacacacacacacacacagacacacacacacacCTCTTTGCCTGA-TGGCTGGTTCGCAGCCTGACTCCCCATG a score=44266 s hg19.chr6_ssto_hap7 3358513 1109 + 4928567 CCAACCCTG-----CCCCACCCACACTCACTCACCTGTGACGCCCACGGCAGACACCGGGCCCAGGCGCCGCCCCTCGTGGAGGCCGTACAGGTGCATCTTGTACTTGCGCCCAGGCTCCAGGCCCCTCACAGTGACCTTGCTCTCCTGGCCCCCAACACGCACCGCCTGGGGCCGCCCGTCCCTGTCCTTGTACTGCACGGTGAAGGAGTCAAAGCGGCCCTGGGGGACGGTCCAGGAAAGGCTCAGCGAGTCAGGGGAGGATCCTGTCACTGTCAGCTCCCCCAGGAGAGGCTCCTCGGGGGGCTCTGGGGCCTCTGTGCCTGGTTCTGTAGGGCTGGGGGTCTCGTCCACATCCTCTTGTGGGGCTGAAAGGTAATATAGGGGGATACAGAGTTTAAGGGTTTAAGGGCAACTTGCTTTGCTGGTGCTGTCAACAGAGGTCATACATCAAATGCG-----CCCCTCCAGAGCAGGCTGAGGGCTGGGGCAGCTTTGTGTTCGCCGTTCAGTGACTCTTGGAATAAGAGCCGGTGAGGTATCCCCGAGCCCCCGGC---CTGTactgctggcagagctgcactgttagaaacctccagaaggcaactgagacatagtgtcaggagccaaagtaattctcatttcctttgacccaataatcccagttctgggcatctgtcctaagaaaattattaaa--gcaggaaaaagttatagcatggaagaactcacgatggggttattcatgacagcaga-tgtgtcaggaacacaaatgacccgtagaagatgattaattttgttatagtgctttcaccgcaacgcatcaaataaccattgaaacgatgatgAATGCTGGTTGTGTAGCCGTGAGGTGAATGATTACAATGTAC-TTGTGTACAAAAA---AGGAAGTGCCAAGAACTTTATGAACACTGATTGCAACTTTAAAACACGCTCTGCATGCAAAATACAGGAAGGGAATGTGCACTACACACATTGTTATTAATGCCGGCAGCTGGGGGAGAAAGTAGGACTATG--AGATTCTTGTTTTCTGTTTTTCAAGCTTTCCACATAATGTTGCTGTATTATTTTCACTAGAAAAACGTGGGCTAAAAAAGAAATTCTGg s canFam2.chr12 4466952 1068 + 75515492 CCAACCCTGAAGGTCCCCGCCG----TCACTCACCGGTCAGGCCCACGGTGGACACGGGGCCCACGCGCCGCCCCCTGTCCAGGCCATACAGGTGCATCTTGTACTTGCGTCCCGGCTCCAGACCCGCAACGGTCACCTCACTCTCGTCGCCCGGGACACGCACCACCTGGGGCCGCCCATCCCTGTCCTTGTACTGGACAGTGAAGGAGTCAAAGTGGCCCTGGGGGACGGTCCAGGAGAGGCTCAGGGAGTCTGGGGAGGATCCCGTCACCGTCAGCTCCCCCAGGAGGGGCTCCTTGGGGGGCTCTGGGGCCTCTGTGCTGGGTTCTGTGGGGCTGGGGGTCTCCTCCACCTCATCCTGGGGGCCTGGGAGA----------AGACACAGGGATGGTGGCTTCATTGTCAA------GTACTGCTCATGTCAATAGGGACAACACAGTGCAAGCAGCAGACTCTTCCAGCTTTCAACAGAAGCTGGAGAACCTCGGGGTTAGGCAACTGGTAATTAATTGATGGAGAGT--GCTAGACAGGCCCCAATCCCCTTCATACTGGACTG--GCCAGGACCata-------aacattcaagaaggcaattcagtcatgtggatagaagccaaaatacttctcatgtcctttgacccaa--atccca--tttgggcagccatcctacaaaaattatgaaaaagttggaaaaagttgtgccatgggag--tcccttatgggatcatccataacagcagaatgtgtcagcaatcgaaatgacccagggatgatgattaattttgttatggcacttttaccacatagcatcaaataaccattaagaTGATGATTAATGCAGGTCGTACAGCCACAGAATAGACCCTCACAATGTAAGTTATGTACAAAAACAAAGGAAGAGCCAGGAATTATGCGTACACT--CTGCA-TTTGAAAACA----------------TACAGGGAGAGGATGTGTTTTGGACA--TTATTATTAATGGCAGTTTTTGGGTCAAAAGGTATTCTGATGGCAGATTTTT-CCTCCTATTTTTCAAATATT--GCTTAATGTTG--ATATTCATTTCACTAGAATAATGTGGACTTAGAAAGAAATCCTGG a score=7370 s hg19.chr6_ssto_hap7 3359947 426 + 4928567 TACAACAATTAATAATAGAGTGTGGGGTGGGGGTGGGGCAGCAATACACATAGAACAGGAGGGGCAGGGGTGGGTCCCTCAGCCTGTCCTCTGTCAGTTCTGTG-GTTCCCCACAGTGGAGACAGGAACACAAAACTGAAC-GTGGACCAGGACAGCTTACCCCCGGAATGTGAATTTTTCTAATGTTCATTTTCCAATAATTTCCCTATTCCCCCTGTTTCCCAACACTCAGATGGTCCTCTGAACATGCATATGGAAATGAGGCCTCTCCCCCAGGAATCGGGGATGCCGATTGAGAGTGCTTCCTCTGTCTGGATGGCCTTTGGGAGATGAG-------CTC-----GCACCTCACTTGGTGCCACAGAGGTGGCGA---CCTGCCCTGCAAGAGACCGCCTCTCAGCAGGGCTGATTCTTCCCCATCGGTA------GGAATTCT s canFam2.chr12 4468022 406 + 75515492 TATAAAAATTAATAATTTGGTGGGGGCTGTGGG------------------------GAAGTGCCA----TGCGTTCCTTACACTGCCCTCCTTACTTTGTGTGTGCTTGTGATTTGTGTGACAGGT-CATAAAATTGAACAGTGGAT---AACAGTTTTCCTTCCAGTTGGCAGCTGTTCTAACATCTATTATCTGATCATTCCCCTGTCCTCCTCCTCCTGCCATACTC--------CTGTGAACATATGTAGAAAAAAGAGGCCCATCCCCCAGGAGTCAGAGGGGCTGTGTGAAATTG-GTCCTCTGTGTGAAGTATCTTCAGGAGAGGAGAAGGAACCTCATAGAGCCTCTCACTTGGTCTCGTAGAGGCGGTGAGCCCCACCCCTACAGAAGGCT--CTCTCCAGGGTGCTGGGCTCTCCCTCACGGCACACAGAGAAACTCT a score=5440 s hg19.chr6_ssto_hap7 3360398 138 + 4928567 ACAACCTGGCTGAGGATGACTTAGAAAAGGCAGCCTGACTGAGCATTT-GGAATTCAATTAACCTCATGATCTCCACCCCTCCAATTTCTTATGGACTAGAAATTTTGAACTTCCTCATAATTAGAAATGAAATAAGTC s canFam2.chr12 4470230 137 + 75515492 AGAATCCGGCTGACCCTGACTTAGAAAAACCATCCTGACTCTCCTTTTTAGAATTTAATTCGCCTTGGGATTTT-GCCTCCGTAATTTCTTAGGGACTAGAAATTATGA-CTTTTTCAGAATTAAATATGAAATAAATT a score=13575 s hg19.chr6_ssto_hap7 3360852 272 + 4928567 ACAAGAGCGATAGAGGAGTAGGACAGATGGAGTGTAAAGAAGGAGAAGACATTATATATTTTCTCTTTTCCCtt-----------tccctgattgtaaaagaaatgtttgccatttaagaaaatttgga-ctatgcagaatagaataatacagaaaaaaatgtgctggaatattctattctatctaacaaatcaggcaacccgtgggatgtgtttctttccagtcttcttgccatgcctgttactttcaaatggttgtgattagcatccttacaaaaatttggg s canFam2.chr12 4470367 263 + 75515492 GCAAGAGCAATGGGGGAA-AAGATGGAAGGGGTGCAAGGGAGGAAAAGACATTATAT---------------TTAAAAGAAATAAttcctgattataaaagaaatgttcaccatttaagaaattttggaacaacacagaatagaataaaacaaaaaag-----gctggaacattctatcctgtcctccaaaccatgcatcctgtaagatgtgtttctttccaattttcttgccacgcatgtTATTTTCCAGTGGTTATGATTAGCATCCTTACAAAATTTGGAG a score=42881 s hg19.chr6_ssto_hap7 3361428 1091 + 4928567 tctcttttttcaatgtaacattataaagtaagg-gtcttatgttaaaacatttcagtggcggcataatagctctttttatagatgttgcctaaattatttagtcatcccaacgtggtttgacgttggattgttcct------cttgtgtgcatttgtgtatgtggttataacaaagaatgctgttattaagatGGAAAGAAAGGAAAATTCTCGTAAGTCAGGCTTGGTGTGCGCCTGACATATTTCACTCTTGGAGGTTATCAGTGGTTGACCATTAGAGGGAGGCCACGCCAA-------------------AGTGAACAAG---CAAACCGCTAG-CATAGGCCACAGCCACAGGGCACAGAGGGAG-GGCAGGACACAGGA--GACAAGTCTGGACCCACAGGGCTTGGTGAAAGGGCACAGCAGTAAACCAGGT-ACCCATGAGGGAAAGGTGGTTACCCCGAGA---CTCCAA--------GCACTACTCACCAGTCACGCCCACGGTGGACACCGGGCCCACGCGCCGCCCCTCGTGGAGGCCGTACAGGTGCATCTTGTATTTGCGCCCAGGCTCCAGGCCCCCCACGGTGACCTCGCTCTCCTCGCCCCCAACACGCACCACCTGGGGCCGCCCGTCCCTGTCCTTGTACTGCACGGTGAAGGAGTCGAAGCGGCCCTGGGGGACGGTCCAGGAGAGGCTCAGCGAGTCAGGGGAGGATCCTGTCACTGTCAGCTCCCCCAGGAGCGGCTCCTCAGGGGGCTCCGGGGCCTCCATGCTGGGTTCTGTGGGGCTGGGGGTCTCTTCC---------------------------TCTGCAGCTGAGAAAAAGGGACACAGAGAGGATG--GCAGGGTCCCTGGGGGATGTGCTTACGTCGTGGGGAAAAGGAGGGAGAAGGCTATGACTAGGGGACATATGAAATAGCCAAGGCTATGACTAGGGGACCTGAGGTCAGTTCAGAGAGGCCCATTCTTGGGGT--------CCTGCTCAGCTGACAGCTAACACACATGAC---AAATTCCAGGGTCAGCTGTGGGGGACCTGGCACAGCCACCAGCACAGC-----AAAACTCCCAATGGCCCCTCCCTGCTCAGGGGGAGCCAGGGGTCAACCACACAAAAAGGTACAATGGGAGCCCCAGC s canFam2.chr12 4470630 1082 + 75515492 GCCCCTTTTTGATTGTAATATTATCAAGTAAATTGTCTTATGTTAAAACATTTTGGTGATGGCAAAAAA------CTCATAGATGTTGCTTAAAT-ATTTAATCATCCCAATGTGGTTGGAAGTTGTCCTCTTTCTTTCCTTCTtgtgtgtgtgtgtgtgtgtgtgtgtg----------------------------------------CGCGCGCG-CGCGCTTGGCCAGTGCTTGACACATTTCTCTTGTAGAGACACCTAGTAGCTGATCATCAGAAGGAGGTTATGCTAATATGTATGATGAGGCTTCAGGTTAGCAAATACCAAACTCCTAGGCACAGGCCACAGTTCAGGGCCGTGGAAGAAATGGCATGAAATGGGGAGGGGAGGTGTGGATTCTTAGGGACTAGCAAAAGAACAGAACAGTCATCTGGGTTACCCATGAAA-AAAGGTAGTTCTCCCTGAAGATCTCTGATCCATGTCACCTCACTCACCGGTCAGGCCTATAGTGGACACGGGGCCCACGCGCCGCCTCCTGTCCAGGCCATACAGGTGCATCTTGTACTTGCGTCCCGGCTCCAGACCCCCAACGGTCACCTCACTCTCATCGCCCGGGACACGCACCACCTGGGGCCGCCCATCCCTGTCCTTGTACTGGACAGTGAAGGAGTCAAAGTGGCCCTGGGGGACGGTCCAGGAGAGGCTCAGGGAGTCTGGGGAGGATCCCGTCACCGTCAGCTCCCCCAGGAGGGGCTCCTTGGGGGGCTCTGGGGCCTCTGTGCTGGGTTCTGTGGGGCTGGGGGTCTCCTCCACCTCGGTGGGGGTTGGCGTCTCTTCTTCTGCAGCTGAGAAAGAGACACATGGAGAGGGTGAGGCAGGGTCCCCGGGAGACATCCTCAGGTCTTAGG-AGAAGGATGGAGAAG-CTGTGACTGGGT--------------------------CTGGGGGCTCCCGATTCAGTTCAGTGAAGCCCATTCTCGGGGCTGGGTGGGCTTGCTCAGCCCACATCTCACAAACATGCTGGGAGCCTCCAGGGTCAGCCATGGGGAAGCCTGTCCAGCCACCAGCACAGCTCACGGAGGCCC------GCCCTTCTCTGCATGGGAGGACCC---------CCTC-------GGTCCTCAGGGAGCCCCAGC a score=35065 s hg19.chr6_ssto_hap7 3362557 688 + 4928567 TCCCATTCCCCAC-CAGTCATCACCAAAGAGCAAGAGGGTGACCCTCCCATGGCTCCCACCCTGGGGCTCCCATCGTCCACTCACCTGTCACCCCGATGGCAGACACGGGGCCCACACGCTGGCCACCGTGGAAGCCGTACAGGTTCATCTTGTACTTGTTGTCTGGCTCCAGGCCGGAGATGGTGACCCTGTCCTCATGTCCTGGCACCCGTGTTGCCTTGGGCTGCCCATCCCCATTCTTGTACTGGACCAGGAAGTGGTCAAACTGTCCCTCGGGAACCGTCCAGGACAGGCTGAGGGAGTCAGGGGTCGCATCTGTCACGGTCAGCTCCTCCAGGCGAGGCTTGATGGGGGGTTCAGG------GGTGGGAGGTTCTGTCGAGGCTGGGGCCATTTCTTCATCCTTTCCTGGGGCTGCATCAGAA----AATAGAATGGGTAGGCATGCCTGGTGGGCCTCCTTTTAACCAAGGGACTCTGGGATTCTCTTAGACACACCAAGGGCCCACAGTCTGGATGCTGGTGCCCCAAGCTTAGAATATCATTTTTCTGCTTTGAATGTTCAGTTAACA---------CCACACC--TGTGGTGAAGTCATGATGCTCAGGTGGCATCCCTGTGATGCTCA------GTGTGCAGGCCTGGGACCCTTAGGAGCTGCCAAGCAAATTTGTTTTGCAGGACAGAATTGATGCTTTATAA s canFam2.chr12 4471738 709 + 75515492 TCCTGCACCCCACTCACCCATTACCTGAGAG----AGGGGGGTCCTGCCACTGGCCCAACCCTGAGGCTTCCACTGGCTACTCACCTGTCACCCCAATGGCAGAGATGGGGCCCATGCGCTGGCCACCGTGGAAGCCATACAGGTTCATCTTGTACTTGTGGTCTGGCTCCAGGCCTGAGATGGTGACCCCGTCTTCATGCCCTGGCACCCTCACCGCCTTGGGCTGCCCATCCCCATTCTTGTACTGGACCAGGAAGTGGTCAAACTGGCCCTCGGGGATGGTCCAGGACAGGTGCAGGGAGTTGGGGGTAGCTTTGGTCACTGCCAGCTCCCCCAGGTGTGGCTTGATGGGAGGCTTGGGAGTCGTGGTGGGTGGATCTGTGGGGGCTGG---TATTTCATGGTCCTTTCCTGGGGCTGGATGAGGATACAAAGAGAATTTTTGGATGTGCTTCATGGGCCTCCATCTAATAAAAGATGTTTAGATGTCTCCCAGACACACCAAGGCCCTCCAGCCTGGATGCCAGCTTCCCAGGGTTAAGACGTCATTTCCCTGGTTTGAATGTTCAGTTACCAAAGAACGGACCACACTCTTGTGGTGCCATCATGATGGGAGGCCGGGACTGCCATGATGCTCAATACATGCATTCATGCACTGAGCCCTTGGGAGCCACAGAGCAAATCTGCATAGAGAGACAGAGCTAAGGGTTTCTAA a score=6681 s hg19.chr6_ssto_hap7 3363915 205 + 4928567 CACCAACCAAACACAACAGGCAAGTTGTATCAGGAGGTTCATCCACCTGGGCTTGGAAATTCCACCT---------------------------------------AATCCTGAGCATTTTT--AGAAACCAACTTAGATTTTATAGCTGAGGGTAGAGAGATGAGACCACATGAGGGCATCTTTGCAGCTGAGTTGTCTCTGGACCTGCAGTAGCTCTGC---TAACTTACGGCAGAGAGAGCACCTC s canFam2.chr12 4472447 246 + 75515492 CACCA-CCAAGCATACCAGGCAAGTCACATCAGGAGGTACATCTATTCAGGTTTGGATAGTCTACTTTGTGAATATTTTCCTTTAATACCTCCTTGTGTTTAGAAGGCTTCTGAGCATTTTTTTAGAGACAAATTTAGCTTTCACAGTTGAGGGCAAAGAGATGAGAC-ACAGGAGATCAACTCTGCACCTGGGTGGTTT-GGGGCTTATATTTGCTCTCTCCGTAATTTATGGCATGGATGACTTCTC a score=16971 s hg19.chr6_ssto_hap7 3364172 506 + 4928567 GATTTCTTTAATCTTTTCTGCTCTTCATAGGGTTTTATTCTGCCTTGATAGTGGTATTACAAATTCATCACATTTCATTTGTCTGTTCTTTTTGAGAACTGAGTCTTAAGCATCTAGGGGGTAACAGCTATAAAAGAGCTTA-CAAAAGCATCAAAGAGCCGAGTTACAGGGTAATGAA----AGGAAAATGCCTTATTAAGTTGTGCACATGGCCAATATTTACAATTAAAGTAATAGTATCCATGTTAACAGGATTCAGTGTTGTTTTAAAAATAAATGGGTATTAATTTGGGAGCTTAGAGAACACATACAATTTTTCCCACTGAAATCAGTGATAATTATGAGAATTTGCCCTAAGCGGTTTTCAGGAACTACCTACCTTCCTCAGAAGGGAAAGACTGCAGTTATCTCTCATTGTGTGTGAGAGCCAAGCCACActcccgcccacccttcacgacaggtatggttattccttctttacagatgaggaaaaggatgtacagagaggt s canFam2.chr12 4472700 417 + 75515492 GGTCTCTTTCAGCTTTTCTGTTCTGCTTAGGGTTTCATTCTTCCTTCATAGCTGAATTATGAAATCATTTTGTTTC--CTATCTGCTCTGTTTGGGAAGCAGGTCTTAAGCATC-AGGGGGTAATAGCTCCAAAAGAACTTAACAAAAGCAATGAACAGCCCTGTTAGCATGTAATGAATGAAGGGAAGGTGCCTTAGGAAGTTGCAGATACAACGAATACTAACTGTTGAAGTAACAGCATCCATGGTAGCAGGATTCAGTGCTCATTTAGCA-TAAATAAGGATCAGTTTGGGAG-TTGAAGAACACATACGATTTTACCCATTGAaatca---ataattatgagaattcatcctaagag---ttcagaaattaattttcttcctc-----------------------------------------------------------------------------------tttcttctttacagatgaagaaagggacgcacagagatgt a score=6121 s hg19.chr6_ssto_hap7 3365002 113 + 4928567 tgtgtgagtctcttgaggacacacagctcaaatgggctgaagctatggtcaaccccaggtgtgcctcagtctgtgttattttcctggtcccccacctctttgGGAACCCAAAA s canFam2.chr12 4473117 111 + 75515492 tgagtaactctcctggggtcatacagctcaaatgggctgaggctagggttaactccaggtctgtctgagtctcT--TACTTCTCTGGTTCCCTGCCTCTTCAAGGACCAAAAA a score=48865 s hg19.chr6_ssto_hap7 3365115 958 + 4928567 AGCCCATGTGTAACGGGCAGAAGACCTGGGGCAATACCAAAGTCTCGGAGTGAAGGCACCAGCAGAACCATTCCCAGGAGCTTGGGAGGCTTGGTCTCAGGGAAAGTAAAATAAAGCCACCAGA-TACTGACAATAAAAGGGAAACTGAGTCTAGTTCAGGGCAGGGCCCAGTGCCCTACTGCACACTCACCAGTTAAACCAACAGCAGACACGGGGCCCACGCGCTGGCCACCGTGGAAGCCGTACAGGTTCATCTTGTACTTGTGGTCTGGCTCCAGGCCCGAGATGGTGACCCCATCCTCGTGTCCCGGCACCCGCACCGCCTTGGGCTGCCCATCCCCATTCTTAAACTGGACCAAGAAATGGTCAAACTGGCCCTCGGGGACTGTCCAGGAGAGGCTGAGGGAGTCGGAGGTGATGTCTCTCACTGTCATCTGCCCTAGGCGCAGCTTTGCAAGAGGAGCATCAGGGGACTCCTCTTCGGGGGCTAGGAAGAGATAGAAACAGAATCTTTTCTCTTGCTGCAAGGAGGTGTTGAGGCCCCAGCTGTCTTGAATTCAGGTCAGAAGGTGGGCCCAGTCTG--GCCCTAACTTAAGATCAATTTCTGATTATAATCATAATCAGATTTTGtggcttccttatggtccctcaaccatgccaggcagcctcctacctcagtacttttacaatgactgttccctctacctaaatgttctttccccagatatcttcatggctcatccccacacttcctttaagtctttgttcaaaagccaccttcttctgtgggccttccctgattactctatttaaaatttcaGTTTTCTcaattgcaatgtatcctcc-ttctatagacctgatttcagcaacaaattgggaaacaacaattatgagacactcgggagactgtagcactacctggatact---tgatatcaaggcatgattgttcacttatcaa s canFam2.chr12 4473346 938 + 75515492 AGCCTGTGTGTAAAAGGTAAGATGGCTGGGGCAACACTGAAGGCTTGGGAT--AGACATAAGCAGAACTGTTCTCAGGAACTTGGGAGGCTCAGTCTCAGGGACAGTGGGGCAAAAACACCTGAATACTGACA-TGAAAGAGAAACTGAGTCCAGCT-GGAGCAGGG-----------ACTGCATACTCACCAGTTGAACCAACAGCTGAGACAGGGCCCACACGCTGGCCACCGTGGAAGCCATACAGGTTCATCTTATACTTGTGGCCTAGCTCCAGGCCTGAGATGGTGACTCTGTCCTCATGCCCTGGCACCCTCACTGCCTTGGAATGCCCATCCCCATTCTTATACTGGATCAGGAAGTGGTCAAACTGGCCCTTGGGGACAGTCCAGGACAGGTGCAGGGAGTCAGGGGTGGTGTCCATCACGGTCAGCTCTCCCAGGTGTGGCTTCAGAAGGGTGCTGGTAAGGGGCTCCCCTTCAGGGTCTGGGGATAGATGCAAACAGAACTTTTCCTGTTGCTGGAAGAAGTAGTTGAGGCCTTGGCTCTCCTGGATTCAGACCAGAAGGTGGGCCAGCTCTGTAGACCTAACTTATGATCCATTTCTGCTTATCATCGT-----TTTTTTGtggcctcctca-ggtctgtcaaacttaccaggcagcctcctgcctcagggcctttgcactgattattccctttgcatgaatgtt-tgaccctggatgcctgcatggctcatgtccacacttctttaagttcattgttcaaatgtca---tctcttcagggccaatcttgaccaccctatttaaaattcattttctcccAACTTAaatgtattctcctttttttggacctgaccccagcaacagattgcaaaacaacacttaagagacaatcaggaaac--taacattacctacatacttaatgatactaatgaatgattgttctttttTTAA a score=5650 s hg19.chr6_ssto_hap7 3367666 211 + 4928567 aagaaagaaagaaagaaagaaaACATTCTAGTGATTCTAGTggaggaagtgggtggggcagagatgagccagactggccagaagtcgatatttgattgaaggaggatggcag----------ggtctttgtactattctttctgtttatacatttgaaattttatttaacaaatacttattaatttaattaatttgtATTTCAAAAATGTGTTCCAATCTC s canFam2.chr12 4474707 220 + 75515492 aggaaagctgtGAATGAAGAATACATTCCAGTGGGGGgaaggcaaggggtgggcggggtgcagaggagccagactggccaggagttaatactaggctgcaacagggcaatggacacacgggagctccttatgctcttctttctctttgtgtgtatCCAATCTTACATATTGGGTATTTGTTGAGCGGATGAATTAATATTTCATGG-CATTTCCCAACcac a score=44887 s hg19.chr6_ssto_hap7 3367877 1054 + 4928567 ACAAAAAGAGTTATGTATAGAGTTCCAAGGAAAAGCGGAGAGCCACAAACCAGCCAGTGAATCACCTCCCAAGAGGCCTCAGTCCCTGGGGGCCTTTCCCATATGGCTCCGACACTTCTCCTGGATTTGCTCTCTCTGTCCCCAGATCACACCTGTCCTGAGCCTTTAGTGAACAGGGTGTATTACAGGTT---TGAGGTCTTGGGGTTCTGGGTCCCTAGTGGAGGAGATGCTGGAGGCT---------GTACTTTGCTAAGACCCAACCCAGAGGGCTCTGCAGTGCACACTCACCCGTGACGCCCACAGCAGACACTGGGCCCACGCGCCGCCCCTCGTGGAGGCCGTACAGGTGCATCTTGTACTTGCGCCCAGGCTCCAGGCCCCCCACGGTGACTTCACTCTCCTCGCCCCCAACACGCACCACCTGGGGCCGCCCGTCCCTGTCCTTGTACTGCACGGTGAAGGAGTCGAAGCGGCCCTGGGGGACGGTCCAGGAGAGGCTCAGCGAGTCAGGGGAGGATCCTGTCACTGTTAGCTCCCCCAGGAGCGGCTCCTCAGCGGGCTCCGGGGCCTCCATGCTGGGTTCTGTGGGGCTGGGGGTCTCTTCC---------------------------TCTGCAGCTGAGAAGGAGGAA----GAGAGAGTGA------------GGGGGATGTCCTTGGGTACTGGGGAAAAGGAGGGAGAAGCCAAGGCTATGACTGGGGGACCCGAGGTCAGTTCAGAGAGGCCTACTCTTGGGGCTGGGTGGTCCTGCTCAGCTGACAGCTAACACACATGAC--AAGTTCCAGGGTCAGCTGTGGGGGACCTGGGACAGCCACCAGCACAGCAAAATTCCCGATG----GCCCCTCTCTGTTCAGGAGGAGCCAGTGGTCAACCTCACAGGAAGGCCCAAGGGGAGCCCCAGCCCCAGCCACAAGCAGGTCTGTGGTGCTGACCAGACCCTTGTCCCATTCCCCAC-CAGTCATCACCAAAGAGCAAGAGGGTGACCCTCCCATGGCTCCCACCCTGGGGCTCCCATCATCCACTCACCTGTCACCCCGACGACAGACACAGGGCCCATGCGCTGGCC s canFam2.chr12 4477929 1064 + 75515492 acacacaAAGATCTTTCCAGGGTTCCCAGGCAAAACAGAAAGCCACACATGGGTCAGTGGATCACTGCCTCGAAGGCTTCCACCCC-ACATACCTCTCGGGCACATGCCTGGCACGTCCCTGGCCTTCGGCTTCCA---CCCCACATCACACCTGTCCTGACATGTTA-----CTGGGTGGAGGGCAGGTTAGGTGAGGCTTTAGGTTCCTGGATTTCCAGTGGAGGACACTCTGGAGGCTCCACCAATGAGACTTTACCCAGCCCAACCCTGAAGGTCCCCGCCGT---CACTCACCGGTCAGGCCCACGGTGGACACGGGGCCCACGCGCCGCCCCCTGTCCAGGCCATACAGGTGCATCTTGTACTTGCGTCCCGGCTCCAGACCCCCAACGGTCACCTCACTCTCGTCGCCCGGGACACGTACCACCTGGGGCCGCCCATCCCTGTCCTTGTACTGGACAGTGAAGGAGTCAAAGTGGCCCTGGGGGACGGTCCAGGAGAGGCTCAGGGAGTCTGGGGAGGATCCCGTCACCGTCAGCTCCCCCAGGAGGGGCTCCTTGGGGGGCTCTGGGGCCTCTGTGCTGGGTTCTGTGGGGCTGGGGGTCTCCTCCACCTCGGTGGGGGTTGGCGTCTCTTCTTCTGCAGCTGAGAAAGAGACACATGGAGAGGGTGAGGCAGGGTCCCCGGGAGACATCCTCAGGT-CTTAGGAGAAGGATGGAGAAGCTGTGACCGGGTCTGGGGGCTCCCGATTCAGTTCAGTGAAGCCCATCCTCGGGGCTGGGTGGGCTTGCTCAGCCCACATCTCACAAACATGCTGGGAGCCTCAGGGTCAGCCATGGGGAAGCCTGTCCAGCCACCAGCACAGC-----TCACGGAGGCCCGCCCTTCTCTGCATGGGAGGACCC---------CCTC-------GGTCCTCAGGGAGCCCCAGCGGGGG-----AGCACCT---------TGAGCAGAAGGGCCTCCTGCACCCCACTCACCCATTACCTGAG----AGAGGGGGGTCCTGCCACTGGCCCAACCCTGAGGCTTCCACTGGCTACTCACCTGTCACCCCAATGGCAGAGATGGGGCCCATGCGCTGGCC a score=11952 s hg19.chr6_ssto_hap7 3447157 354 + 4928567 GAGTGGAGAATGGCAGAGGTCGTGGTAAATGATAGTGGCAGCAG------CCTTTTATCTGGAGACTTCAGGCCCTCCTATGCTAACTATCTTT------ATGTTCAGAGCTC---------------------------------ATTCAGTACAGGGTGTTCTCCAGGATAAAACCTCGGGACTCTCTC-TCCAACCGGCCCTGTCCCTTGG-GTGACTACCTGAGGCTTCTCTTTACCTTTCCTTTCACATCCAT-CATTGCCTTTCAAGTCCTCCTTCATCAAGAAATCTTagtgcttttcaaacataagtgtgcatacatatcacctagggaacttgttaagttgcagattatgatttaggaagtctgttgtggggcctgtgattctgcatttcaat s canFam2.chr12 4530189 388 + 75515492 GAGCGAGGGAATGCGGAGCTGGTGGTGAAGGAGAGCGGTAGCAGTCCTTTCCTTTTGTCTG-AGGCCTCAGGCCCACCTGTGCTGTTCTCCTTCCTCCCGGTGTTC-GAGCTCCGAGCCAGAGCCGCGCAGCCCGCTCCTTCGCCGGTTCAGCGCAAGGTG--CTGCAAGAGAAATCCTCAAGCTTCTTTCCTCCAACTGCCTATCTTCCTTTGCGGGGTCACCTGAAGCTTCTCTT--------CCCTCGTACGCATTCATTGCCATTCAAGTCTTTTTCC--TCGGAAATATTAGtgcttttcaaatcttcttgtgcatgcatatcaccgggggaacctgttaaatcccaggatttgatttaggaaggatggggtggggcctatgattctgcatttcAtt a score=16554 s hg19.chr6_ssto_hap7 3447752 324 + 4928567 TCTGTGCCCCTTTAGTTTATCCTACATTTTACATGTATAACTGGTGTGACCTGCTCCACTGGATGTTGCAGG-------------TTCTCCTCCTAATAGAAGATGTAGAGACCTATTGTGATTCAGTCTTGCTTGTCCAGCTACCTACACAGCCTGGGCTACCACAGTTCTCCAGGAAAGAAGGATCCCTCTCTTGAGTACCTCACTTTGGCTCCCTCTTAAGTTTGCTCTC---------ACCATTGTGCCTCAGACTATAAAAACCATGCCAGGACAGCCAGGAAGGGAGACGGTTTCATCATTAGCCAAAGACTTGTGTCAAAACAATTCTCTCCCTGGttt s canFam2.chr12 4531859 342 + 75515492 CCTGTGCCCCTC-AGTTTGTACTATATTTTGCCTCTATAACTGGTTAAACCTGTTCCATTGGGTGTGTCAGTGGAAAACTGGTCCTGCTCCTCCTAATAAAAGATGTAGGTCCCTTTTATTATTCAACCTTGCTTGACCAGCTCTGAGCATGGGCAGGGCCACCACAGCTCTTCAGGGAAGGAGAATTCAGTTCTC-AGTACCTCATTTTGGCTCCTTCCTCAGTTTGCTCTCTAATAACCTGCCATTGTGCCT--GACTATAAGGACCATCCCAGGACAGCCAGAAGGAGAGATAGTTTCATCAGTAGGCACAGAATTGTGTCAAAACACTTCTCTCTCTGTTTT a score=7217 s hg19.chr6_ssto_hap7 3448831 216 + 4928567 TACAAATATAGGCATTGAAACCCCTAAAAAAAACCTAATCCAAATCATCATGTATGAAAATATTTCTCTTTTTAAAA----ATATGGCC--CATCAAGAGGTAAGCACAAACTTAAAGTTTTAGAAGAGT----------TCCCCAGAGAAGATAGCCATGGACCTGTAGATTCCCCCTAGTCTTAACTTGAGAAACACAGGACTAGGAAGGGACCAACAACCTGTGAAGAT s canFam2.chr12 4533298 215 + 75515492 TACAAACATAAGCACATAAACTCCTAAAAAAA------TCCAAATTATCCAAAATGaaaatatttctattttttaaataaaatttGAACTTCATCAAAATGAAAATACAGATTTTAAGTTTTATGAAAGAGGGCTCAGAATCCTCAGAGGAGAAATCCATGAATCTTTTGCTTCCCCCAGATCTCAGCTTGAA--------GAGTAGGAAAGGACCAAGA---TACGAAGAC a score=24748 s hg19.chr6_ssto_hap7 3449412 563 + 4928567 AAAGAAATAAGAAAGAGTATAGGCTCTCCCCCAAAGTGTAGATACTACATGCTTGTTGACTGACTCAC-----ACTATCTTC----------CTC---AAGTCTAATTGTGCCAGAGCTCAGCTCTTTGGAGGCAGTCATCAAGGAATCAAGACGAAAGAGAGCCACAAACCAGGAAGATTATATCCTTAAGCCTGGCTAGAGAACAAGACATTTGAGAAAGATACATAAAGAGGATGACAAGTGAAA-TTTGCTTATCTGTTGGGATAGATGCTTGGACTGGAAAGTGGGGAAACAGCAATGTCTCTCTCCTCTCCCTTTCCCCTAAAGATTTGAGAATGAAATGGAAGATGAGCAGGCATGAGAGGAAGAGATGAAAAGGAATCTTCTTCCCCAAGGGACTGGATCCAGTCTCTTCTTGTCACTACAAATTGTCCTCTGCTCCCTCTCTTCCTTTGGTGTTGCAGGGACCAACATCACCAATACCTCCAGAAATCGTGTGAATGCAAATGGGACATACTTACCCCGTCT-----------------------------------------------TGCTACACAGAAACCTCTCGA---AAAGTGAGAC----------TCTGGGTTAAGAAGGTCAAA s canFam2.chr12 4533513 622 + 75515492 AAAGAAATGGGGAAGAGCATAGGTTCTTCCACAAAATGT---TGCTGCATGAATATTAACTGATTCACCTCTTGCTCTCTTCTGGTTCCTTGCCCTGGAAGCCTCGTTATGCTGGGGCTCAGCTCTCTAGGGATAGTCACCAAGGAGTCAGGAAGAAGCAGAGAAATAAACTGGGAGGATTATATACCCAGGCCTAACTAGGGAACCTGGGATCTGAGAAGGACACAAAAAGAGGATGACAAGTGAAAATTTGCTTACCTATTGGGGTAGAAGCTTGGACTGCAGAGTGAGGAAGGAGCAATGTTTCTCTCCTTTCTCTTTCCCCTAAAGATTTGACAATGAACTGGAAGAAGAGCAGCCTTGAGGGGAAGAGCTGAAAAGGAACATTCTTCTCCAAGTGACTAGATTCAATCCAAACCTACCAC----GAGCGTCCTCTATTCTCTCTCTTCTTTTGGTGTTTCAAGGACTAACCTTACCAACACCT-----AATTGTATGGATGC-TGTGGG----ATTTCCCCTGCCTCAGGTTAGAGGGATGGGGGATGGGGGGTGGGGGGTGTGGGTGGGTAGCAGCACGCAGCAACCTCTGGAAAGAAAGTGAGATTAAGAAAGAGTCTGTGTT---AAAGTCAAA a score=13226 s hg19.chr6_ssto_hap7 3450278 296 + 4928567 GTCAAAGAGACATCTAGGAGAATGCAAGAACTTGGGAGGAGGGCAATAA-TTCTGCTCTCTATGATTGCAGAATGTTAACTCCATTTTGGAACAATTCTCCACT--------------CCTTTAA----GTGAAGAAAATTGGACTGAGGGAAA---CCATATTTGACAAGTTTCTGGGGATTTACCTGCAAATA----TATTTACATCTTACCTGGAGTCACTTCCCTCCTTCCTTTTTTCTGGGTCCTCCCCTTCTAAGATGGCTCAGAGAAACTGGCCATACTCTGTTATTCTCCTTGTTCTATCCCAGAAGGGCATTG s canFam2.chr12 4534135 319 + 75515492 GTCAAAGGGACATCTGGGAGAATGGAAGGACTTCGGGGATGGACTGTCATTTCTGCAATCTGTGATTATGGACAATAAACCCTATTCTGGAACAATTCTCCATCTAAGTCATAGGGTGCATTTAATGCCTTGTTGAAGATTGTTCTCAGGGAAATACCCATATATGACAAATTTCTGAGGATTAACCTATAAATAATTGTTTTTAAATCCTATCTGGAGTCACTTCCATCTGCCCATCTTCTT---TCACGTCCTTCCAAGGTGGCTCAGAGGATCTGGCCATATTCTGCTACTCTCCTTGCCTTATCCCTTAAGGGCATTG a score=1385 s hg19.chr6_ssto_hap7 3450574 21 + 4928567 TTTGCCTTCATTCAAGACCTA s canFam2.chr12 4534997 21 + 75515492 TTTGCCTTCATCAAAGATTTA a score=6164 s hg19.chr6_ssto_hap7 3450821 116 + 4928567 AACCTGAGGCAGAACCCAAGGAGAGGTTCAGGAGCTGGCTTGAGGTAGTTTGCCAGCTAGTGGTTGTTTCATCTTGTTCC--TGCACACAGAGCATATGATGCTTGCCCTCTAAATGG s canFam2.chr12 4535018 118 + 75515492 AACTTATAGTAGAAGCCTAGAAGAGGTTCAGGAGCTGGTGCAAGATAATTTGTGAGCTGGTGGTTGTTTCCTGTTGTCTCCACACACACAAAGCATGTGACATCTGCCCTCCAAATGG a score=9920 s hg19.chr6_ssto_hap7 3450937 258 + 4928567 ATGAAGTAGAATTTTTTTCTTATTCATTCAGTAGCCCTTAT----------------TGAATACCCAGAATTTGCCAGTGAAATATGGAGACAAA----------------------TACGGAGA----------ATCCCCACCAGTAATCTAATGAGAGTGAAAAGTCAGA-TTAGCCAATGCTCCAGATGCAAAGGAAAAAGTGATAAGTGGCAGGGGAGTTATTTTCAACTGGGGTTGATCTGAAAATACCTCATGGATGGCTTCAGAGAGTTGAGACTTGAAAGAGGGCCGCAAATTTGATAT s canFam2.chr12 4538800 294 + 75515492 gtgaagtaagatt-----cttattcattcaataatctttacaggttacttactttactggttactcagaatttgtcaatgaaacatggagataaaaaaaaaaaaaaagaaaaagaaaCATGGAGATAAATATAGGATCCCCACCAGTAGTCTGATAAG-GTAAGGTGTCATAGTTAACAAAAGCTCCAGGTGCAAGGGCAAAAGTGATAAGTGGCAGGGAAGTTACTTCCCACTGGTGCTAATCTGAAAAGTCC-------AGAGTCCAGAGTGTTGAGCCTTGGATCATGGCCATAATTTTGACCT a score=30121 s hg19.chr6_ssto_hap7 3451536 564 + 4928567 AAAGAAATGGAAGAGATTTATTGCAGGTGGAAGAAGCAGCACAAGGTAGGAGAAGTAAG-----GAAAGCCACTTAACACCCAGGATTATTCCTCTCCAGTCTGTGAGTCTCAGTTTTCCCAGGCTATTCCAATACTCCTT-TGTGCTGCCCTGTCACCAGGCATTGAGCTGGTTGGAA--GTTTTTACACTCTCACATTCCCCTGCGTTCTATACTCACCACATGGAACCATATGCTGCACTTATTCTCTTCCATTTATTATCTGCATGAGAGACAAAAATTCTAGCTTTCCAAAAGCTAAATAAATTTCCCCTTCTGTTTAGCTTTGGTGGTTTCTGTGGCTTTTAGTTTTGCTGGGATTTGTGTCAAAATCGTTCCTCCCTCCTTTTTGGTCCCAAAGCATTTTG--CTGTGCTTCCCTTATAGTCAGGGTTTTCAAGCAGGA---------GGGAGGCAGCCTTTTTGGCAGTGAAGTGTTTAATGATAACAGCTTCACCTTACTAAACGCTGGCCATGCATTATGACCGTAATACTCAgcattgttctaaatgtcttgtatatattagctatttttct s canFam2.chr12 4539094 553 + 75515492 AAAGAGATTGAAAGGATTTCTTGCAGGTGAAGGAAG-----CAAGGCAGAAGAGGTAAGGAAATGAAAGCCACTTTACATTCAGTATCATTCATCTCTGACTTGTCAATCTCAGCTTTCTCAGAGTATTTCAATACCGCTTACAGGCTGCCCTGTCACCAGG-ATCAAGCTGGTTAGAATTTTTTTTATACCCTCATATCCCTGTGCATTCCATACTCACCACATGGAACCATATGCTGCACTTACTCTCTGCCATTTATCATCAGAGCGAGAGACAAAAATTCTAGCTTTCC-AAGGCTAAATAAATTTTCCCTTCTGTTTAGTTTTGGTGGTTTCTGTGG-TTTTAGTTCTGCTGGGATGTATGTCAAAATTATTCCTCCCTCCTCTTTGTTCCCAAAGCGTTTTTGCTTATATATCCCTTATAGGCAGGGTTTTCAGGCAGAATGAAGGTGTGAAAGGCAGACTTTTCCACAGTGAAATATTTAATTACAAGAGCCGCTCTTTTCTGAATCTTGACCATGCATTATGACCATAATACCAGGCATTGT----------------------GCTGTTTTTTt a score=22633 s hg19.chr6_ssto_hap7 3453028 437 + 4928567 tatatttaatcaagtgatgagggaaagcctccttgtggaggtgatgtttgtgc--agatataaatgacataaaggagcagtcatgcaagtatctggagggagagtgtccaggaaaagaaaaa-gagagtgcaaaggccctgaggtagaaaggaattggatttttatgttaaattc----------agaaa------ggaggtcagagtgagtggagcagagtgagcaagggaaagagtggtaagggatgaagacagagaggtggggagaaacaaggccaggtaggcttcataggccatgggaaggactttttattttgtccc------acatgtgatcaggaggcatcagagggttttgagcaggtaaatgatatcatctggtaattttaaagatcactctggtttcttcatagagggtaggccacatcagtaaaaaatagaagcagaaaatccaattaagg s canFam2.chr12 4539837 454 + 75515492 tgtttttaatcaagtgatgagggaaagcctccttgtgga-gtgatatttacgcaaagacataaatgatgtaaaggaacaggcgtgcagatgactggaggcaga--gttcaggaagagaaaaacaagagggcaagggccttgaggcag-gagaaattggatttttatgttaaattcatagcagttaagagaacagctggaggccagagtgggtggagcagagtaagcaaggcaaaaggtgggaggagatgaagttgaagagatagggaagaacaagatcaggtaggcttcacaggccaatgtgagtattttggattttgttttaagtagatatatggt----agccatcagaaggcttgagcaaagtgagcaatatcatctagtaatttaacagatcactctagtttctactcagaggaaggactgaatcagtcaaaaatggaagcagaaaatccaattaagg a score=1752 s hg19.chr6_ssto_hap7 3453473 60 + 4928567 aagggacaatggaatcatgggagcttggattagggtagaggagagggcc-------------------aagaatagagt s canFam2.chr12 4540493 79 + 75515492 aaggggcaatgatagaatgggagcttggattacagagaaggaagaggTCCCGAGGCTGTCTTTTTTTAAAAAAGACATT a score=4972 s hg19.chr6_ssto_hap7 3453533 93 + 4928567 ccagaggctctc-taatatttaaaggtctggaaaaggaataggagctgtcagtgaagactgagaaggagcagtaaataaggaactagggaaTGC s canFam2.chr12 4540804 92 + 75515492 CCCCAGGCCGTCTTAATATGGAGGAGTCTGGAAGAGAAGTAGGAGCCGTCAGTGAAGAC--AGAAGGAACAGCAAATAAGGAACTGGGGCATAC a score=2867 s hg19.chr6_ssto_hap7 3456663 63 + 4928567 TATATATGTATTACAAAGAATAATTTTGTGAACATCAGGCAGCTTATGAAGTAAAATCTTCCC s canFam2.chr12 4541809 57 + 75515492 TGCATATATATTACAAAG--TAATATAATGAACATCATGCAGCTTAAG----AAAATCTTCCT a score=7335 s hg19.chr6_ssto_hap7 3457033 217 + 4928567 CAAGAGGTAAAATCTTCCCCAGTATAGTTAAGGCTCCC--TGAATTTCCCTTTCCA-----GATTGCTTTTCTGCCAAAGGGTAAGCACCATTCTCTGAATGTTGTGCTTTTAC----TACCTAGGTGAGTAGCGAAACA-GTTTTTttctttcttttcagagatgaagtataattttatagcatgtttgcataatgatgggagtgttgcagtacagaggggtaaactg s canFam2.chr12 4542058 226 + 75515492 AAAGAAAGAAAATCTTCCTCC-TATTGTTAGAATTCCCTGTGTATATTCTTCTCCAATTGTAACTCCCCTCGTGCCAAGGGATATCCACTAT--TCTGAATGTTGTGCTTTCACTGTATACATGGGTgagtagaaaatgaggtggggttttttcttctgaaaggtgagctatattagtacagcatctttgtatgatgatggggatgtttccgtgaagagggggaaactg a score=30973 s hg19.chr6_ssto_hap7 3457259 747 + 4928567 gagagagagagataggggataatttcaggaataacatctctgagcaggtgagagggaacaggatcccggggtacagatgaggtggcaggtgggtgcatgtcagcttctctgcggtag-----------------------agttgcaggtagactggtgaatttgggg-tgggaacatgaggaagttcccttctgaaagtttctgttttctcactgaaataggaagaaaagtcatcatcttgtgaagttgtggtctcagatttggggaatgtgaactgagtagggaaaggcgagctggcatgccacactgagggcccgcaggaagcaagaccagtcagtatgactgtgtgtttctcccc-------------agctgttgaatgcaggtgtggagcaggcagagtgggatttgaccagggataaaatgtgccagaggaaggggggccaggagtacagggtgagggctgagaggcgattaccatgttgaaccttggaatctaaactgggtaatgaggaaagtgaagaattgag---atcaaa---caatgaaaagtaag----ttagtggatgggaggcccagatggggttgaagaatttttgggataggggtactgg--ggagcaacatgaaaagactgaggatgagattttagaagggcagtaggtattggtggcaaccaagttgaaggtatgacatagggcgagagg-------gaagcagggagaaataaatcactgcaag---agaagggcaggg--tgctagagaatctgcatgaacattgaa---aacaaaaataatAAAACGGg s canFam2.chr12 4542713 769 + 75515492 GAAGGAGAGAGGCAAGGG---------------------Ctgag-aggtgagaagggacaggatcccaatatagggatagggtgggggctgggagcaggtcagcttctctgcagtaacaggaaggcaataaatacagccaagatgcaggtggcctcgtagatttggggatgaagccaggagagagttctcttctgaaaatttctgttttcttactgaa-tagaaaggaaggtcatcatcttgtgaaactgtggtctcagact-ggggaatgtgaactgcctggggaaatgtgagcttgcaggccatactgagggctgaaaggaagtgagaccagtcaatatgactgtgtgttttttttcctcagacacattcagctgttgagtgcgggtgtggaacaggcatagttgggtttaactggggctaacctgtgtctgaaggagagaggc--------------aagggctgagaggtgatgatagtgtggaaccttgggatctacaatgggtaatgaggggagtgaaaaattgaggtgatcaaatatcaaagaagagtgagagatctgatggatgaaaagtgtgtgtgggattgaagaatttttggaat-ggggtgctgaatggaggaggaggtgacaataaaagaatagatttgggaagggtggcaggtattgatggtaaccaagttgaaggtatgacacaggaagaagaatggctaaggagtagggaaaaacc--tcagtggaagtgaggaaggccaggaactgttcaggatgctacaaga-tattgaagccaccaaaaataatgaaatgac a score=6584 s hg19.chr6_ssto_hap7 3459416 212 + 4928567 ATCAGGTGCTGAATCTTCCATTGTAGAGGGGGAATGATGACCCAGAATCTAATCATGGTTTTCCCCCATCTGTATGAGAGCACCCATACAGATGTTATGGGAGGGCAGAGCCTCTCCTAGAGGATGGAGTCTCT--GTCAGTAGAGGTGCCACAGCCAAGGGTATCACCTGCAGAGGGAGGTGAGTCAGA-TAGGAAGAGGATCACATTGTAACt s canFam2.chr12 4543524 194 + 75515492 cctaggtgctaaattttcaact----------aatgatggCCCAGAACCAAATTATGGGG-----------GGATAAGATCTTCCAAGAAGATATTAGAAGGGGCTGGAGCCTCTCCCAGAGAATGGACTCTCTCAGTCCATAGTGGTGCAAAAGCCAAGGGCACCATGCAGGGAGGGAATTGAGGTAAAGTGGGAGGAGAATCAAATTGGAATA a score=16876 s hg19.chr6_ssto_hap7 3459954 461 + 4928567 AGGAGTCTGGGTGAGGTTAAGAGATCTGAGATTAAGAAACAAACATTCCTAAGGAAAAGCAAAAGAAAGCTAAGTCATTTTTTATTCATCTCTCCCTTTGCCTGATTCCTTTCAATTCAATTGAGTTCAAAGATTGGTAGAGGAGGTTTTATCTGATGAGGATCTGAAAAACAGAGATAAGCCAGATTTGACTCTTGCCTTCAAGTAGCTCACAAGGTAAACTGTGTATGTCAAGATATCAGGTGGGAAGAGATGAGAAAATATGCAGATAACATGAA-----------TCTTAGATCTAGATACTTTTCTCCTAAAGAAAATTGCCCGGGTTGAAGTCAT---TTTTTGGCCTTTCCATTCTCCCTGGGTGGTCCTTAAAGTGTCTGTAAACCTgtgattcccaaccttggctgccctttggaatcacctggttatgtcttaaa----tactgatgccagagttccacccccagagat s canFam2.chr12 4543912 414 + 75515492 AGGAGTCTGAGTGA--------------------------------TCTGGAGGAA-----------------GTCACTGTC-ATTCGCTTCTTCCTCTGCCAAATTCTCTTCCATTCAATTGAGTTCAAAGATTGGTACAAGAGATTTTATCTGATGAGGATCTAAAAATCAGACATAAGCCAAAGTTGTCTCCTGCCTTTCAGTA-CTCATAATTATAGTAATGTACGTCAAGATCTCAG-TAGGAA-AGATGGGAAAA-ATGCAGATAAAGTGAACGGTGTATCGGTTTTAGACCTGCATATCTTTTTGTCAAAGAAAGTTGTTCTAGTTGAAGCCATATCCTTTGGGCTCACCTCTTCTATCTTTGTGGTCCCTAAG-----------CCTgtaattcttaaccttagctgccctttggaattacctggggatgtctaaaaaaaatattgatgcctgagttgcatccctagagat a score=5346 s hg19.chr6_ssto_hap7 3461270 101 + 4928567 tgatttaattgttttaggatgcgacatgggctttcagatttttcagtgctccccagtggattctaatgtgtaacctggggtaagaaccgttgCTCCAAGGA s canFam2.chr12 4544328 100 + 75515492 tgatttaattggttcaggatgtgatctaggctttgggatttttaaatgctcccaggtg-actccactgtatagccagggataagaatcagtgCTCCAGGGg a score=11011 s hg19.chr6_ssto_hap7 3461415 300 + 4928567 AGAGGAAAGAGAGACACCTTTTTGCTACAGTGAGGGATGAATTGATCCGGACTTTGAAA----GATATTGTAAATAAAATTTGACCAAGTAGAGAGGCAGATGTCAAGAGGGGGAGAACATCATGAGCAAGAGCCTAGATGTGGTCTAAAGCCTCTGAAATTTGTGACAAGCTGCAAACAATTTGGTTTATAATAGGCAGAGATTTGGGAAGGAGGTCTAAGATTTGGGAACAGCTGGGCAAATACCTGGAG------GTGGGAATGATGAGTA---ATTCagtatggttagaaattagaataaacagagaag s canFam2.chr12 4544797 292 + 75515492 AAAGAAAAGAAAAGAATCAGTCCTCCA-----AGGAATACCTGGAGCTCTGCCTAGAAACCACTGCAGGGTAGGTAAATTTTGGCCAAGTAGAGATGCAGATGTGAAG-GGAAGAGAACATTGTGAGTACAAGCTGAGATGTGGTCTAAAACAC---------ATGACAAGCGTCAAACAATTTGGTTTGTAA------GAGTCTAGAGAAAGAGGTCTAAGATTTGAGGATAGCTGGGCAAGGACCTGGGGACGGGGGTGGGAATGATGAGTAGTAATTCAGTTTGCTTGGAGATTAGGTTGAAAAGAGAAA a score=12386 s hg19.chr6_ssto_hap7 3461715 177 + 4928567 ctggatgattttaaattatggaaggtgttaaaggccagattaaaattttgtaaataattgagtaggcaatagggaaccttgaagggcttttgagcagtggagttatgaaag---tgtgtttagggaggctgatctgacaatagtgtggagggagacttgaggtagggagaagtaggaagt s canFam2.chr12 4545300 180 + 75515492 CTGGATGGTTTTAAATGGTGGAAGGGGTTGAAGGCCAGATTACAATTTTATAAATAATTGAGTAAGCAATAGGGAATCTTGAAGGGTTTTTGAGCAGTGGAGTTATAAAAGAAATGTATTTAGGGAGGATAACCTGACAGCAGTGTTGAGGGAGACCTGGAGCTGTGAGAGATAGGAAGT a score=8580 s hg19.chr6_ssto_hap7 3461892 202 + 4928567 agggagacctgttgggaaagctgatgcaataatccta-atgaggtaatttttccagcaagggctggggaaaaattacagattcaaaagacattgtggtggcagaactgactaggcttgagagcacaccaaaaataa-ggcaggagggagagggaggaggcggcaaatttctagataagg----------------------aagagtgattgggaaaa---------------------------------------------------------------tggtctat s canFam2.chr12 4545681 289 + 75515492 AGGGAGACCTTTTAGAGGAGCTGTTGTGGCAATCCTAGATGAGGTCATTTTTCAGGCAAGGGCTGGGGAAAAGTTACTGGTTCAAAAGATAACATGATGATAGAATTGATTTGGCTTGACAGCACACCAAAAGTAAAGGCAGGAGGGAGATGGAGGAAGCATCAGATTTTCAGATAAGGGTGATGAGGAAATGGTGCCATTAACAGGGACAGGGAAACAGATTTTCAGTGGCATTTCATCATTTTGGTTTGGAACATGCTGAGTTTAGAGGACCAGCAGCTTGGTCCAT a score=13580 s hg19.chr6_ssto_hap7 3462094 541 + 4928567 taacaga-------------------gacagggaag-------------------caggttt------------------tctgtggca------------tttcatcagtttgttttggaatgtgttga----------------------------ttttagaggaccagcaagcatcttccatgtggctatgATCTTCAGG-------------------CACTGGAAA--AAACGTCTGCATGTAAA-----------------------ATACAGGTTGGAAAAGCATTTGATTAG---------CTGAGTT--GAGTGAATGAGCTTTTCAAAGGAAAGTCTCAGAGAAGGAAAAAAAATCAGAGATGGACACTTAGGGGAAGGGAGGAGAAAAAGCAAGGAGGGAAGGCAGAGGCGGAATGGTTAGAGGTCTGTGTGTGTGTCGGGGGAAGGGAGGTAATACGTTCTTGAACCTGGGTATGTGGGGAATTCAGGGTCAAGGGACAAACATGGGAGGGCTTAGAGAGGCAGAATAC-------TGTGAAAATGCCATTGATTTGGGATCTGGGTAA----------TTGGTTGCCATTTGAGAGGGAGGTTTCAGGAGAATAGGGTGTGGATGCATATTCCAAT------------------------AAGTCAAGAAATAGTGGGTATGAAAAAAAGACAGATACAGACATATCTCTGATAGCAAT s canFam2.chr12 4546086 716 + 75515492 taacagaaatttctcacagttttagagattgggaagtccaagatctaagtgctggcagatttggtacaaggtgagagccccctctggtacatagaaagcggtcttctcattgtgtctttg--tgtggtgaaaagggcaaggcaactttctggggtctcttttataaggggactaatc-ccattcatgaaggtctg-tcctcatgacctgattgcctaccatcacactgaggattagacgtcaacatatgaatttggggaggaagctaacatttggtctatggcaGAGAAACATTTAGTTAGAAGTGATATCTGAGTTTGGAGTAGATGAGATTTTCAAGGGAAAGTCTCAGAAAAGGAAAAGATCT-AGAGATAGACACTTAGGG-AAGGGAGGAGAGAGA---AAAAGGGGAGGAAGAGGGGGAATGATTAGAAAAGTGTGTGGAAGTAGAGAGGGGAAAGATAACATGTCCTTGAACCAGCACA-GTGGAGAATCTAGGGTCAAGGGACAAACACAGGAGGGTTCAGAAAGGCAGTGTGCACCTAGCTATGCAAAT---ATTGATTTTGGCTCCTGGTAACTTCTGGTCATTGGGTATTATTTGACAGAGCAGTTTCAGTAGAGTAGGGAGTGGAAGCATATTTTAAAGGGTTAAGAAATAGAGGAAAAAAAAGGTTAAGAAATAGTGGGTATGAAAGAGAGACAAA----GACACATCCCTGACAAAGGG a score=13504 s hg19.chr6_ssto_hap7 3462946 283 + 4928567 GTGAATTCTGTTTTTCAAGAAGTTTGGTAAGGTAGGCACATTAAATGCGAAACATCCAAGGGCGAACCCATGATATTCACACCTCACCCCACCCTCCTCCCACATCTCCTATCACatttcctatctcagtgcatggcttcccttctagattgtaagctccatgaggtcaggggtcacacctgctgtctgggtggatgtctcaccagcatccagcatggagtctgcatgttgcataaatgCATAAATTAGGTTAGGACCCTGTCCTGTGGGTGTACAACCAAAG s canFam2.chr12 4546844 260 + 75515492 GTGAATTCT-TTTTTCAAGTTGTTTGGTGAGCAAAGCACATTAAATCTGAAATGTCCAAAGGAGAACTCACAATGTCCATACACCATCCCATCCTCCTCCTATGTCCCCTGTC------------TTGGTGCAtggcttttctcctagatcataaaccccatgaggtcagtattcacatccattgttttggcagatgtctcgccagcatcctgcatggtgtctgCAAGTTGTACGGATGCATA----------GAACTTTGTCCTACAGATGTACAGCTGAAG a score=4778 s hg19.chr6_ssto_hap7 3463264 112 + 4928567 CACTCCCCTCAGAAAAGAGGCCTATTGGTTGACCTCAGGATAGGAGAGGGCAACTAGTCCCAGGGAGACTT-GAGAGGCCATTGACCTCCTCCCTGGGCTCCCACAGCAATCT s canFam2.chr12 4547117 110 + 75515492 CACCCCGCCCCCACCAGAGGCCTCCTGGTTGACGTCAGGGTAGGAGAAGGCAACTGGCCCCAGCTAGACTTCGAGAGCCTAGTGA---TCTCCCTGGGGGTCtgctgtgatct a score=383432 s hg19.chr6_ssto_hap7 3463376 8230 + 4928567 GCTCTCTTTGCCTTTCCTATACCCCCTACAGTCCAGCATGTGGGGCTCTAATCCAAGTTATCTGCCACCCTCCAGCCCACAGTCAGGAACAGCTATGGGCAGCTGGCATCTCTTCTTGGCCCCCATCACTCTATCCTTGACCAGCTTCTTCACCATGGTCTGCCCTCTCTGTTCTCTTGTCTTCCTGGAGTTCTGGGG-----------------------------------------ATAGTAGGGAATGGAAAAGGGGTACTGGGGAAATAAAGCCTCACTAAGAAAATAAAGCCTCACTGAGAATGGACCCCAAG--GTCTTCCTTGGTGGATTCCCAGGGAGCTCCCCTCCGTCCCCCATATTC--ACGTGTCTCTCTGGCGATCTGGGA-ATCTGTGTCC-CTCACGTTAGTCTCTGTCGGGTTTTCTTTTTTTTT--------------------------CCTTGGAAGAGGAGATGAAGGGAAGTGAAAGGCGGAATCAAAAGTGGGGAGGGTCTTTGCGGGGCCGCAGTCTTTGGAATTGCGGGCGATAAATCAACTAAGTCTCTTTAATATTGTCTTTCAGAAGTTCACACACAC--TCACACACAGATCAGAACAAGGCG-GGGCCGCCGAGGGGAGCGGGGAGCGGG------------GACTTGGG-AGGTCCATAGCCTGGATTCCCTTCTGCC----CGGCTGCCCAGGGGCTGGGATGGGTGGAAGGGAG-TATTTACAGAGCGTTTACAGGCAGGTTTCTTATCCCAGGGAGAAGGGTCCTACACCAGGAACTTCCCAAATGTCCTT--AAAAAAAGCAAAAGGAAAGGTTCTGGGATTAGCAAGAAAATAGGCAGATACCTGGGTGGAGGAGGGACAAAAATGTACTTGCAAAAAACAGGAGTGTGGGGG--CCTTACTACCCCAGGGCTCGGTCCTTTTGCCGGAAGAAAGGGAGGGGTCTGTCCGTCTGTGGGCGAGGCCTGGAGCCACAAACCCAATCACTGGACTGAATCACCCCGCGGAGAAGAAAAGAAGGCGGAGCCTGCCGACCTGGAGGCGGGGTTTTGTCAGAGCTGGGGCGGTGCTTATAGAGGAGGCGGGGTTTTAGGGACC--------------------AAACCGAGGTTGCTCGGTTGGGGGCGCTACACTTTGAGGGTGAGGGGGCCTGGAGCGACTGAGGGTCCGGCGTTTGGCCGGGATCCCGGAAAGCGGCGTCCCTGGGGGTGTGGGTTTTGGAGGGGTTCCTGAGGAACTGGATTCCGAGCTTGCTCGCAAGGCGAGACGTTCCGTGGAGGCGGAGTTTACGATGTATCCAAGTCTGACGGCCCCAGAAACGGGTGTGCAGGGCGCCCATTGGGTCCGCGGTATGACTGCAGAAAGAGCCTGGGAGATCGAGGGGCGCAGAGTGGGGCCGGACCAGGGGCGTTTTTAGGGATCCCAGTAGTTCTCGTGGTGCTGCGCGGCGATGATGATGACTACGGTGAGGATGGTACAGAGCACCATGGCCGCGATGCCCACGGCCAGGGAGATGAAGGAGAAGTTCCGGGCCTCGCGTGAAGCGATCTCGGCCGACACCATGTCTCCGCGGGCCAAGGCCGTGCGCACCTACGGAGGAGGGGTGGGGGAAGGAGGTCAAAGAGCTGCGGCCTCGTTCGAACGCCTCAGCCTTTCTCTAAGATGGTCCCCAGAACGCCCAGAACTCCCT----------------------------------------------------------------GTCCCCGCCCCCAAA-----CCGAGTATGCCCCTGCCCCCTACCTGCACGGCCTTGAAGATGGCAATGATGCCAGTAGGCCAGAAGCAACAGATGGTGGTCAGCACCGCGATGGGCATGTAGTCGTGTGGCGGGCGCCTCGGCTCCAGTAGGGCCAGCCCTGGGCCCTGGGGCGGCGGGGGGAGAGTGGAGGTCACTCCTGTTCCCCCCGGGGTCCCGCCTGCATATGGCTGTGGAAGGAAATTTGGGGGGCAG------GGGCATCACTCTGACCCTCTCCCAGCCTACCAGCGTTGGGCGGCTGGCAGAGTGGCTTTAAAAGCACAATTTTTACCTATGGCTTCTCAAAATAA---AGCACCCATTACCCTTCCAGGACACCCATAAATTCCACCTAAGCCCCTCTCCTCCCTTCCTTGCTTCATTAACCACCATATTCTT-GGGCTTTCTACATTCTCT-CCCGCAAGGTATGGTCCCACTGGGGCTGTCCTGGCCTCAGGTCAGACCTTCTTTCTTCCCTCCAGACACCTACCAGGCCTCCCCTACCCCCTTAGTCCCAGG---CTTCTCCCACATCCCTCTTGGTTCCCAGCTTCCATTCCCCCCGTCCCC---CGCCAGGCGG---TTTCCTACTTTCAGACCTCCTCTGAACCTCTAGGCTCCGATCCCCCTCCCAGGCCCTGACTCTGGGCACCAG----TAGACTCCTACTCCCGTGT-----------------------CTCTCCCTAGTCCTTCCTGTCTCAGGCTCCCTTCTTTCTAGGGCTTGTCCCGGGAACACTACCT-GTTCCCTGCCCTTGTTCCTCTATCCTACCAGCCCCCAGCGTATCCCCAATTTCAAGTCCTGTATCGCGTCCCCCTCTTTCCCATGTCCCTGTCTGCCCGGCACTCACCGTGCCCACCGGGTAGACCGGCACGTAAGCAGTGCAAGGCTGCAGCTGCAGGGGGTATCCGGGCGCTACGTAGCCCCCCAGCGGCAGCGTGCCCACAGTCCCCGCGTGCGTGGGCACCACGAAGCCAGGGGCCTGGGCAGTCTGGGCTggcgccggcgggggcggggcggcggcagcgggcggcggcggGGGAAGTGGGCCCTCGAAGCGAGTCTCCTGCAGGTAAGGGTCGGGTGGCATGCGGGGCAAGGTAGCGCAGCCGGGTGGGGGTGCCCCGGCAGCAGGGCCGGGAGGGGCGTGGTGGGGGGGCCTCGGCAGCGTGGCAGAGGAGGAGGGACCGCGCTGAGCGGTGGCCGCGGAAGAGGCCAGGCCCCCTGCCCCTAAGCGCGGGAGGGTGGCGGTGCCAGACtgatggtagtggtggtggtggtgatggtgTGAGGAAGGGGCTGCCTGTGGCGGTGGGGCTGGGGGTTCGGCTGGAGGCTGAGGGGCATTGTAGGGCGGCGGAGAAGTGTGAGGGACTGAGTCTGGGAGTCCTGGGGGAGGTGAGTGGAGGAGAGTATAAGAGGAAAGATGACACAGTGATGAGTTGAGG-AGGGGGTAAGGGGAAACACAGCCGGTCAGGGATGGAGAAAGATAATGGGAGAGACACATAGAGAGAGACGGGTGAGAAACCATCTCTAATTTGAGGGGCAAGAGAGGGGCTGTATCTAGGCCATCTGCCCCCCTCCTTCTTCCTTCCAATCTAGTTTTGAGGTCACAACTCTGGTCTGCTTCTTTTCTGTCTTTTTCATCACCATGCACCCAGCTCTCACCTGCAGACCTAATCCCCTCTCCTTTGCTATAGCTGCCTTTGGGCTGGCCTATCCGAGCTAGTCCTGTGTGTGCGTATGCGTAGACATGCAACCCTGTGTTAATATGTGCTCAATTCAACAGTTGTATAAACACATGTGGGATGACATGTGTTCCACTCTGCTGTTCCTTCAGTGGGGGGAGGAGTGCCCCAGCCTCTGTGAGAATCTCGGGACCTCTTTTAGGGCAGATTAAGAAGAGCCCTCTGGATTTTGCTCCCTTGACAACCCCCATCTGGTCATGTCTCCATATTTCCTCACAGGATGTCTCCATGCCAGCCAGTG---ATTGTCCATCTGTCACTCCCAATGATGCCATCCCTGCAAAACCTGGCTG--------------TACCTCCTTCACCCTCTCAACCTACCCCCCTGACCATGTTGTTGGCAAGGGGCAGAGGCTGCCACTggaaagaggaaaggaagagaa-agggggaga---cagaaagaggagggggactgggggagtgttgagagctggagagaaggggaatgaaata---gaaccacagctgaggaggggtaagggagggggttggggc--aagggggacggagagtctggagacagtggagggggtggg-----------agGTTTTGTTATTGTTTTTACCTGACTTTTCGGATGACATGCCTGCGGTCTCGCTGGGACAGGGTCCCTGCAGCCGGAGTGGGGGTCCTCGGCCGGTGCTGGAGTCTGGGTGC-TGGATGGCGCAGCCGGCAGCAGCGCAGAGATGGAGAGATGAAGGCAGCGGCggggggggggggcggggggggcgggcggagggagagcggggaggggggg-AGCTTAAAGGGACCGAGGCGAGGGAGGGGGAGCGCTTCAGATGTTTC-CCACTCGGTCTCTCTCTGCTCTCGGACCACCTCTCTCCTCCTCTTACCCCGGCATTCAAGCCCCCAGTTTGGGCTCCTTTGGAGTTGTCATGGAAACACGGAG----GCTAGACCAGGCGAGGCGGGTGGGACTAAGGAAAGGAA----GGAAGGAGAACTCTCTGGAGTCTCCCCCACCAAGACT-----CAGTGATTGTATTGTGGGAGGAAGTGAACAGGTTCTCAGTGGAGTTAATAACCCAGGTGCCTCCAGAGGCAGGTCGTC----------TCCCCCTCTTAGC-----------TCCCTGCAAGGTGCCAGGGTCTTCTCCCAAATCCTTGGCCCCAGTTTCCTCCTCTTTAGAAGAGATAAATACTTGTGTGTGAGAGAGAATTGTGCAGAGTTCAGAACTGCGATGGTCTGAAAAGTTCCCAGGGTTTGGTGAACCTAC--CAACCTAGCAGTAAAGAGGGAGGCCCAGGTCT---GTAAATCAGGGGGAGCTGGGC------CTTGGAGGGAAAAG----------------GGAGAGAGAGTTTGGGCGGTGTGCATAC----------------ATACCTTCTTCGTCCAGGACTAAGGAGCTGAAGCTCTTTTGGAGGGGGTAGGGGGTATGACTTAACTGCTCATTTCTGGCAGCTCTG--TTGGTAATGTGTGCTTGTTCCCCCACTTTCCCTTTGCTTTTGAGGCTGCTTAGAGTCTCTGGGCTGGTCAATGTTCAGATCCATTCCCTAAACCCCCCTACTCCCACCCACCACCTCCCACCAAGACGCATCTCCAGCTCCTGAGTCGAC------------------------------------CTGCAGTACAGC-GTTATT--AGTCTTTTTATTTGCTTATTGCATCTTGGGAGCGCGTGGGTGGGTGAAGGGAGCGAGGATAGGAAGTCTATGGAGATT-------TACACCAGTTTTTTTTTTTTTTTAAACAAAAACACAGCCAGATAATCATTATTCTTCCCTTACGTCC-----------------CCCCAGCCCCCACCTGGGGCAGTCGCTCT-CCCGGCTGCGTCCCTTTTCGTCCATGTCCTAGCAGAGACTACAGAGCAGTACAGAGGCTCTCGCTGAAACCAGTCCCAGGCTCCACAGAGTCAGATCACGGCTTCACACCAGTCGTTCTGGTCACTTAGGCGTTCGCGTGAGCGCTCAACCCCTTACCGCCACCTCATCGTCACTCTACACCATTCTGAGCGCAAAAATGTTTTGATTGAGACAAATTTAGACCAAGCAATGACCTTGTAAACAGAGAGAGGGGCTCA----GACATGCTGAGAAATCCTTATCTCTAGAGAAACGTCTTTAAATGCTAAGTAAAAGCCCTAGCAAGTAAAAGCCCTGAGGCACTAGGGTGTCGGTTAGGGGTCACAGGCGGAGAGGTGGGGCGCCTG------GGGGTTTCGGT--AGGGAGCCACCCACAGA------TAACTCAGACAGCCAGATTCTGGGGGTCGTTCAGGTTGAAAGACTGGTCGAAATTACGCGGGCATGAGTCAGCGCATCCCTACGCGCCCTCCGCCCCTTGAGGGTGGGTCGCTTATAGGGAGGGGAGTAGAGTAGGGCAGGAGAAACTGGGCCAGGCTGCACT--TAGCTCAAGGGGCCTCGAGGACTCTCTGCGTCTCTGGAGACAAGGGCACTACACGCACTTCAGAATGAAGAGTTGTAAGTCGCTGACCTGGGGCGGACTGGAGG--GTGGGGTGGGGTGGGTGTTGAGGGGCACGCCCGGGCTGGC----------------ATCAGCCCTCCAGGCCACCCTGCCACTCAC-------------CCAGCACACGGCAAAATGCAGAGGACTACCTTTCCCTGGT---------------CCGCCCCCTGG--CCGCCCC---TTGGGGAATGCAAACTTCGTGTCCTGCTGCGGAGCCAGACGCCTGTATTGGGAAGTGGGGAGAATCAAGGCGGGGAAATCGGACTTTTGGGTCGCTGGGGGCAACGAAGCCTGGAGAGGCCTTCTTTCCATTCCCAGAATATGTTTGCTGCTTTTTCCTCTCCCCACTGGCCTAAATGGATCGCTCCGCCTGTTTCCTCCCCAGCACCTAGGGCGCAATGGAATATTCCATTGCCCCTCCTGTCCTGGGTCTGTGTTGCGGGGAACGCTCGCGCGGTTGCCAGAGAAAGCCCCGGACGTGACGGATTTGCGCGACCCCAAGCAGCCCGCCCTTCCCCCTCCCATCCGTCATTCCCCTGCGCTCTCTTTCCTCACCCTTCCCCCCGCCACCGTGGGTTCCAGACTTGGGATAAGTAAACAGCGGGTGGAGCGAGGCCTACGGACCCAGGCCAGGTGGGAGTCTGCACTCTTCAAGGGGCCTGGGCTGCTGCTCACGG---GTATTAAAGAACTCCGCGTTGTTCATGGCTGAGGCGATGCATTAGGAAGATCCTGGACCTAGAGAACAAGTCCCCCGAACGCTGAGTTGGAGGCGGGACTTCGGGTGCGCGTTGGTGCGTCAACGTGGTGGGGGGGTGTGTTTGTAGGGAGAGGGCTGGAGTAAGTTAAAAGTAGGCTATTTTGTGACACGGACCTGGTGTGGGAGCGAGAGGAGGTGG----CTTGATTGCCGGGCGTCTGTTCCGAGGGAGGAGGGTGTTGCCATCTCCCTCACATGCCCTTATCACCCCTTTCTCAGGCGGGAGCATGCTGGGGCTCTGGGGGCAGCGGCTCCCCGCGGCGTGGGTCCTGCTTCTGTTGCCTTTCCT---GCCGCTGCTGCTGCTTGCAGCCCCCGCGCCCCACCGCGCGTCCTACAAGCCGGTCATCGTGGTGCATGGGCTCTTCGACAGCTCGTACAGCTTCCGCCACCTGCTGGAATACATCAATGAGGTCTGGCAGGGGACACCTGGGTGCAGGGCGTTAGAGGCGTCTACTGTGGCAGGGGAGGGAGAGCGGGGAACTGAAAGCCACCCCTCTGGGCCTGCCCAGTTCCTCAGGGAGCTGGTGCTGGCGTGGGGGAGAGTTGGGGGACGGGATCCCTGGTTCTAGCAGGGTACAATAGACCTGTGGACGCGGGCCAGGGGG---TGGCGTGTGGGAGCTTCTTAGCCTATCCCCGGTGGCTGCATTGCCCCCTTCCCACAGACACACCCCGGGACTGTGGTGACAGTGCTCGATCTCTTCGATGGGAGAGAGAGCTTGCGACCCCTGTGGGAACAGGTGCAAGGGTTCCGAGAGGCTGTGGTCCCCATCATGGCAAAGGCCCCTCAAGGGGTGCATCTCATCTGCTACTCGCAGGGTAGGCGACTCCCCTGCCCCTAACTCCTAAGCCCTATCTGAGGCTTGATCCTTATCTGAGGGACACTTCCTAGCGTCCCTTTTTCTGAACCACATTGCTCCAGGCACAACCCTGGTACCTGAGCCCTTCCTTTCTGACTTCCCTCAGCACCTGGGTCTCATCTCTG--TCTTGAATGGGAGGGAGGCTCCCTACACTGCTGCCCTTTTGCTTCCTGTTACCCATGGTTCTTGGACATAAGGGCTAAtggggcaggtaaaaacatcctagaactagaggcaggaggcccagcatctaattcgggctcagtcacttatatgatgtgtgaccttttggcacagggtgtgcctgccttctgtaagcctcagtctcctttgtgtacagtgtgtgtctgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgGTGGGGGTGGGGGGTGCTGCTGGCTTTGCTGTCCTTAAGTGCCTGCCCAATGTGGTGTTCTGCTTACAGGGGGCCTTGTGTGCCGGGCTCTGCTTTCTGTCATGGATGATCACAACGTGGATTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTATGGAGGTGAGTGGGCAC--TAGACTCCATAGAATGCCCTGAGTTTTGGGGGAACAGAGGTTT-ATGGTCACTTAGCATTGCCATTCGCTTGCCAGACACGGACTACTTGAAGTGGCTGTTCCCCACCTCCATGCGGTCTAACCTCTATCGGATCTGCTATAGCCCCTGGGGCCAGGAATTCTCCATCTGCAACTACTGGCATGGTGAGT-GGGGATGCTGAACTGGGGCTTCCATGGA---------------TCAGGTCAGTTGCTTCCACCTCTGCTACAACCAATAGCAGTGATGACAATAAAGATAACTTACATTTATTGAGTTATTTGAACAGGCTCTGT s canFam2.chr12 4547573 8266 + 75515492 GCTCCCCTTGCCTTTGTTATACAGG-TACAACATACCACGCAGGGCAGTAATCCAAGTTGTTTTCAGCCCTCTGGCCAGAAGGCAGGAATAGCTGTAGGCAGTTGGCATCTTTTC------CCTGTCATACTGTCTCTGACCAACTTTTTCAGAATAATCAGTCCCTT----TCTCCTGATTTCCTGGAGTTCTGGGGTCTACTTGTAAATCCTCTCTTCTCAAAGCCCTAAACCCAGTCTGGTAGA-AGGGGAAAATGTGTGCTGGGAAAATAAATCCCCACCAAGAA-------------------TGGACCTCAGACCAGATTCCTGCTGGGATTCCTAAGGAGCCCTCC--CAACCCCCATAGTTGTATCTGTCTTTCCGGTGTCTTGGGGGATCTGTCTCCTCCCACTTTTGTCTCTGTCAGttttctttttctttttttctgttttcttttatctttctttCCCTAGGAAGGGAAGGTAAGGGGAAAGAAAAGGGGTTAACAAAAG-----AGGGTCTTTGCAAGGCTGCAGTCTTCGGAATTGAGGGTGATAAATCCACTTGGTTTCTTTAATGTT--CTTTCAGAAATTCATACACACATTCACACAGAAATCAGAACAAGGTGTGGACTGCCGAGGGGAGCGGGGAGCGGGCCGGCTCCTCCCGACGTGGGGAGGTCGGTACCCGGGGTCACTTTCTGCCAGGCTGGCTGCCCACCGGTTGGGATAGGTGGAAAGGAAATATTTACAGAGA----ACGAGGACTTTCATCATCCTAGGGTGAAAGGTCCTAAACTGGGAACCTCCCAAATCTCATTCTAAAAATACCAAAAGTAGAGGTTCTGGGATTAGCAAGAAAATAGGAAGG-----GGGTGGAGGAG--ACAAAACTGTACTAGGAAGAAATGAGCGCGTGGGGGGGCGTGGCTACCCCGGGGCTCGGGCCCAGCGCCGGCAGAAAGGCAGGGGT------GTC---------AGCCTGGCGCC-----------------------------CGCGGGGACCAGAAAAGGGCGGAGCCTGCCGACCTGGAGGCGGGGTCGTGTAGGGGCCGGGGCGGAGCCTACGGAGGAGGCGGAGCTTTGGGGACCTCGCTCTCGCCGCGGAGCGGAGGCGGACGGAGCTCGGCGGGGGGCGCTGCGTGAAGCGGCTGCGGGGGACTGGAGTGGCTGAGGGCCCGGCATCTGGCGGGGATGTCGGGAAGTGGTATTTCTGGGGCTG--GGTTTTTTTGGGGTTCCTGAGGAACTGGATTCGGAGCGTGCCTGCCAGGCGAGAAGTTCCGTGGAGGCAGAGTTTAGGACGTGTCGACATCGGGCGGCCCCCGGGACAGGTGTGCGGGGCGCCTGCTGGATCCGCGGCGTGGCTGCAGAACGCGCTGGAGAGGTTGAGGGGCAAGGGGTGGGGCCGGGCCGGGGGGGTCCTCACGGATCCCAGTAGTTCTCGTGGTGCTGCGCGGCAATGATGATGACTACGGTGAGGATGGTACAGAGCACCATGGCTGCGATGCCCACCGCCAGGGAGATAAAGGAGAAGTTCCGGGCCTCGCGTGATGCGATCTCGGCAGACACCATGTCTCCGCGGGCCAAGGCCGTGCGCACCTGCGGGGGAGGGGCGGAAAAAGAGGATT--GGAGTGGCTGCTCCGTGGG--------------------TGATGCTCCCCAGGACAGCCAGCACCCCTTagaataagaaaaaccaaaagaaaaagaaaaaaaaaaaaagaaagaaaaagaaaaaCCGAGCGAGGCCACCCTTCCCAGACGCCGCCGTCTACTCCCCTTCC----ACCTGCACGGCCTTGAAGATGGCGATGATGCCCGTGGGCCAGAAGCAGCAGATGGTGGTCAGCACCGCGATGGGCATGTAGTCGTGCGGCGGGCGCCTTGGCTCCAGCAGGGCCAGCCCTGGGCCCTGGGGCGGCGGGGGGAGTGTGGAGGTCACTCCTGTGCCCCCCGGGGTCCCGCCTGCGTAGGGCTGTGGAAGGAAGGTTGCGGGAGAGGACAGAGAACGTCATTCGGGTCCTCCCTGAGCCCACCAACATTCTGCGTCTGGCAGAGTAGTTTTTAAAGCA-GATTCTTGCATGTTGCTTCTCAAAGAAACTTGTCATCCACTACCCTTCCAGGACACCCATAAATTCCACCTAGGTCCCTCTCCTTTCTTCATTGCTGCCCTTACC-CTTTATTCTTAGGGGTCGCCACACTCCCTCCCCATAAGGTATGACCGCACCAGTGCTGCCCTGGCCTCA------------CTTCTTCTCTCCAAATATCTGCTTGGCCTTCCCTATTGAGTCAGTTCTAGGTTTCTTCTCCCTTATCCTCCTTGGTCCCCAGGTTTCATTTCTCCTTCCCCCTCTCTCCAGGCTGTTCTTTCCTTCTATCAAGCCTCCTCTGGACTTCCGTGCTCCATTCCCCTTCCCAGACCCTGATCTCTGACCCCAACTGCTAGacacacacacacacacacacacacacacacacacacacacacTCCCAAGGCTTTC----CTTAGTCCCTCCTCTCTGTAGGCCTAGTCCTAGGGAC-CTGCCTGGTTCCCTAGCCCAGTTTCTCTATCCCACCAGCCCCCAGTGCGTCCCCA----------------------CTCCTTCCTCCCAGGCCCTCGTCAGCCCAGTACTCACCGTGCCCACCGGGTAGACCGGCACGTAGGCAGTGCAAGGCTGCAGCTGTAGGGGGTAGCCGGGGGCTACGTAGCCCCCCAGTGGCAGCGTGCCTACCGCACCCGTGTGCGTGGGCACCACGAAGCCGGGAGCCTGGGCAGTATGAGAGggcgccggcgggggcggagcggcggcggctggcggcggcgggggcagcggGCCCTCGAAGCGAGTCTCCTGCAGGTAAGGGTCGGGTGGCATGCGGGGCAAGGTGGCGCAGCCGGGTgggggcgccccggcggccgggccgggcggggcgTGGTGTGGTGGTCGCGGCAGAGTGGCTGAAGATGAGGGGCCGCGCTGAGCAGTGGCCGCGGCGGAAGCCAGGCCGCCTGCCCCTAGGCGCGGGAGGGTGGCCGTCCCGGACtggtggtagtggtggtggtggtgatggtgAGAGGAAGGGGCTGCCTGTGGGGGTGGGGCGGGGGGTTCGGCGGGGGGCTGGGGGGCATTATAGGGTGGCGGAGAGGTGTGAGGGACTGAGTCCGAAAGGCCTGGGGGTGGTAAGCagaggagggggcatggggagaga---------gaagaggtgaggaagggggtagggggagacacagagggccagggatggaagaagataatgtgagagacaga-----ggagatgggtgagAAGCCATCTCTTGGTCTCAGGGCAGGAAAGGGGTTGAATCTAGGCCATCTGTCCCC--CCTCCCTTCTTTCAATCTAGTTTTGAGGTCGCAACTCTCCTCCATTCTTCT----ACCTCTTCAGCAACATGGCCATAGCTTTCACCTGCACACCCAA-------------GCCATGGCTGCC-TTGGGCTTGCCCATCTGAGCTGGTCCTGTATGTGCACGTGTGTAGACATGCAACACTGTGTTAACATGTATTCAAACCAACAGTTGCATAAACACATGTAGGATGACATATT-----CCCTTCTGCCTCCTTGCCCTGGGAAGGGGCACCCTAGCCTCTCTGGGAATCCCAGTACCTCTTCTAGGGCAGATAAAGAAGGCTGTTCTGAATTTTACTCCC-TGCCAACCTCCATCTGATCATATCATTGTATTTCTCCACTGAATGTCTCCATGAGAGCCGGTGTCATCTGTCCATCTGTCACTCCCAATGATGCTATCCTTGCTGTACTTGGCTGATGCTAGGCCACTCTACTTCCCTCACCCTTTCAACCTGTCCCCTTT-CCATGTTGTTGGTAAGGGGACGAAGCTGCGATTGGAAGGAGGAAAAGAAGAGAACAGAGGGATAGATTAAAAAGAGAAGGAGGAT--GGGGGGTTCTGAGAGCTGGACAGAAGGGGAATGAAACAATCAACCCGCCTCC-----------AGGGAGGGGGTTGGGGCCAAGGGTGGGGGGAGAGTCTGGAGATGGTGGAAAGGGCAGGtttttatttttttatttttttatt-tttttaCCTGACTTTTCCGATGACATGCCTGCAGTCTCGCTGGGACAGGGTCCCTGTAGTGGGAGTCGGGGTCCCTAGCTGGCGTCGGAGTCTCGGTGTGCGGATTGCGCAGCCGGCAGCA---CAGAGATGGAGAGATGAAGACAGCGGCGGG-------------------GGGCGGAGGGAGAGCAGGGAGGGGGGATAGCTTAAAGGGACCGAG--GAGGGGGGAGGA--GTTTCCGAGGTACCGTCACTCGG-----------------------TCTCTCCTCCTCTCACCCTGGCATCCAAGCCCCCAGTTTGGGCTCCCTTGGAGTTGTCATGGAAACAGGGAGGCAAGCAAGACCTGGCGAGGCGGTTGGGACTAAGGGAAGGAAGGCGGGAGGGAGAACTCTCTAGAGTCTTCCCCTCTAAGACTGGCTGTAGTGATGACATTGTGGGAGGAAGGGAGCAGGTGCCCAGTGGATTCTGTACCCCAGTCCCCACAGGATCTGGTTCACCCTAGTCAGGACCCCCCCCCCAACTTCCCTCACAGTCCCTGCAAGTTCTCAGGATCTTCTCCCCAGTCTTTAGCTTCTGTTTCTCCCGCTTTAGGAAGGATAA----CTGTATATGACAGAGAAC--TGCAGAGTTGAGAGCTGCGATGGCTTGAAGAGCCCCCAGGGTTATG---GCCTGCGGTGAGCTGCAGGTAAACTGGGGGGCTTGGACCTATAGTAATTTAGCGGGAGTCTGGCTTGTGACTGGGGGGGGAGAGGGCGTGGGAGAAGATTGGAGAGAAGGCTTGGGGGATACGGAGATACGTTCTTCCTGGGAGATATGTTCTTCCTCCGGGGTGCAGGAGCTG-AGCACTTTGGAAGGAGGGGATGGAT---------CAGCTCATTTCTGGCAACTTCGTTTTGGGAATAGGTGATT----TCCCTTTCCCCCTTTGGTAATTAGGCCTCTTAGAGTTCCCCAGTGCATCCATGTTCAGATCTATTTCTTAAAATCCCA-GCACCCACCCACCACC-CCTGCCAAGGCCAGCCGCCACCTCCTGAGTTGGCAGGATGTGTGTGTGTGTGTGAGGAGGGGGGCGGGTGTCGGAACACAGCTGTAATTGCGGTCTTTTCATTTGTTCATTGTATCTTGGGAGCACGTATGCGGG-GATGGAAGGTGCAGTGGGCAGTCTACTGAGACTTAGAGGATAGAGGAG------TTGGACTTTATGCAAAAACACAGTCAGGGATTCTTTAACCCTCTGCTACCTCCGCCTTCAGATTAGTCCTCCCCAACCCCCGCCCGAGGCAGTGGCCGTGCCGGGCTGC----------------GTCCTAGCGGAGCCTACAGAGCTGTGCAGAGGC-CCCGCCTGGCCGGGTCCCAGGGCCCAGACATTTAGGTCA-GGCCCCAAACTGGCCATTCTGGTTTCCGAGGCGTCGGCGTG-GTTCCAGACCCCCTACCGCCACCCCACCCTCACATGACACACCTCAGAGCACAAATCGGGTTT-ATTGAGA-GACTTTAGACCGGCCAA-GACCTTGTGAAGAGAGGGAGGGATTCATTCCGACAAGCTTCGAAATCCTTTCCTCTAGGGAGACGCCTTCAAACGCTAAGTAAAAGCCC------------GCC------------GGTGTCT----GGTGTCTC-GCCAGGGGTGCAGGGCGCCTGGAGCTCGGGGGTCTGGCCGAGGGGGGCGCCCACATGAGTTCCCGGCTCAG---GGCAGGTTGCGGGGGTCCCTCAAGTTGAAAGACTGGCGGGAACCACGCGGGCGTGAGTCAGCGCTGCCCCAGGGGCCCTCCGCCCCTTGGAGGTGGGTCGTGTCCCGGGAGCGGAGGAGAGGAGGCCAGGAGAAACTGGGTCAGGCTGCACTTCTAGCTCCGGGGGCCTCGAGGACTCTTCGCGGCCCTGGAGACGAGGGCAGTACACGCACTTGATAACGAAGAGTTGTAAGACGCTGACCCGGGGCCGGCgggcaggcgcggggcggggcggg----gcggggtcctcccggtcctcccggtcctcccggtcctcccggtcctcccggccctcccggccctcccggtcctcccggCGCCGGCGTGGGACCGACTGCGGA-GACGGTCTTTCTCCGGTCTCGTCCCCAGCGCCCTGCCCCCTCACCCCGCCCCCGGTGGAGGGGGGAGAACTTCGTGTTCCGCGGCGGAGCCAGA-------GTTGGGAAGTGGGACGAAACAGGCC--AGAACTCAGCCCCTCAGGGCGCC-GGTGCAGCGGGGCCCGCGCTCGCCTCCTCTCGGCTCGCAGGCTGGGCCCGCCGCTTCTTCCTCTCCCCACGACTCTAAATGGATTGCTCTGCCTGTCTGCTCCCCCGCCCTCGGGACGCAGTGGAATGTTCCACGGCCCCTCCGGTCCC-GGCCTGCGATACAGGGGACGCGGGCACGGTTGTCAGGGAAAGCCCCGGACGTGACGGCGGAGCGCGACCCCTGGCAG-----CCTCCCCTCTCCCCTCGGTCACTGCCCTGCGCGCGCT-------CCGGACCCCCTCCCCCCGCGGGCTCCGGTCTAGGGGGAAGTAAACAGCAGGCGCAGCGGAGTCCGCGGACCCAGGCCAGGTGGGAGCTTGCG-TCCTCCAGGAGCCTGCGCTGCCGCTCGGGGTCTGCCTTACAACACCCGGGGTCGTGCAGCGCCGGGAC-------------------GGGCCTGGGGA--CAGTCCC-----GGCCGGGCTGGGGGCGGGGCTCCGGGTGCGCGTCGCTGAGTCTGCGTG--TAGGGGGTGTGTTTCC---TACAACCCCCGAGTGCGATCCTAGTAGGCTGCCTGGTGAGCTGGACCTAGTGTGAGCGCGGGCGGGGAGGGGCCTCTCGGTGGCCGGGCGTCTGCTCGGAGG--GGAGCGTGTCGTCCTCTCTCTCACAGGCCCCCATCGCCCC-TTCTCAGGCGGGAGCATGCTGGGGCGCCGGGGCCTGCGGCTCCCCCCGGTGGGGATCCTGCTCCTGCTGCCGTTCCTgccgccgccgctgccgcccgcagcccccgcgccccATCGCGCTGCCTACAAACCGGTCATCGTGGTGCACGGGCTGTTTGACAGCTCGTACAGCTTCCGCCACCTGCTGGAATACATCAACGAGGTCTGGCCGGGGACGCCCGGTTGTGGGGCATTGGAGGCGTCTGTGGTGACTGGGGAAGGAGAATGGGGAACGGAAAGCTGCCCTGCTGGGCTTGCTCCGTTCCTGGAGGAGCTGGTGCTGGCGT-TGGGAGAGGCAAAGGATGAGATCCCCGGTTCTAGCAGGGCGCAGTAGGAGTGCGGACGCTGGCCAGGGGGCGATGAGGTGGGCGGGCTTTGTAGTGCACCCCCTGTTGCAGCATTGCCCCTTTCCCACAGACACATCCCGGGACTGTGGTGACAGTGCTTGATCTCTTCGATGGGAGAGAGAGCTTGCGACCCTTGTGGGAACAGGTGCAAGGGTTTGGAGAGGCTGTGGCCCCCATCATGGCAAAGGCCCCTCAAGGGGTGCATCTCATCTGCTACTCGCAGGGTAGGTGCCCTCCCC-CTCCCAAGTTCTAAGCCCTATCTGAGGCTTGATCCTTATCTGAGGGACACCTGCTAGTGTCCCCTTTTCTGAACAATATTGTCCCAGCCAGAGTCCTACTACCTGAGCCCTACTTTTCTGACTTCCCTCAGTACCTGGATCTTAGCTCTGTATCCTGAGTGGGAGGGAGACTCCCTGCACTGTTGCCCCCTT--TTGCCATTACTCATGGCTCTTGCCCATATGGGATAATGGGGCTGTAAAAAGCACCCTACAAGgagagtcagaagatccagaatccagttctggctctggcactttggagacatataaccttttgccacaggtttt---tgctttctctgggcctcagtgtcc-tcaCAAGCATTgtg-----gtg---------------------------------gtggtggtggtggtgACAAGGAGTGC-----------CTGTCCCTAAGTCCCTGCCTAATGTGCTGGTCTGCCTCCAGGGGGCCTGGTGTGCCGGGCGCTGCTCTCCGTCATGGATGAGCACAATGTGGATTCTTTCATCTCTCTCTCTTCTCCACAAATGGGACAGTATGGAGGTGAGCGGGGATGGTGAGCCCCATAGGGGGCTCTGAGTTTTGGGGACACAAAGGTTTGGGGGCCACTTGACACTGCTGTTCTCTTGTCAGATACGGACTATCTGAAGTGGCTCTTCCCTACCTCCATGAGGTCTAACCTCTACCGGATCTGCTATAGTCCCTGGGGCCAGGAATTCTCCATCTGCAACTACTGGCATGGTGAGTAGGGGATGCCACACTGGGATGTGCATGGAGAGGACACCTGGGCGTAGGGCCTGCGGCTTCCCTCTGTACCATAACCAGCAGCAGCAGTG---GTAAGGATGACTTAC-----------CATCTGAATAGGCACTGT a score=23644 s hg19.chr6_ssto_hap7 3471907 495 + 4928567 CAGAATGTTTTAAGTGTGTCACCTTATTGCCTTAGAAGGTTTAGTCTGATGTGggagtcagcaaaccttgtctataaagggccagagagtaaatatttttgactttgtaggacatatagtctgtttcacaactcctcaattctgctgttgtagtgtgaaagcagccatgtaccatatgtgaatgaatgtgcctgtgttccagtaaaacttcatttacaaaaacaagtagcaggctggatttggtcctttggtcacagtttgccaacctctAG---------------ACcagaccatggggccagaatacttgggtttgaatcttgaccctattgggtgcctttgggcaagttacttaaccattctgttactcagttttccttatctgtaaaatattatagcat-gtact--tcaccaggtggttgtaaggattaaataaataaatgaatgcaatgtactttgaatagtacctggctcatatagtagatactagatagaagtacttgctattg s canFam2.chr12 4555840 500 + 75515492 CAAAATATTTTCTGTCTATTACCTTATTGCTTCAGA--GTATGGTGTGGGGcaggggtcagcaaagtttttctttaaagcaccagatagtaaata--tttggttttgcaggccatgtagtctctgtcacaaata--taattctgccacagtagtgtgaaagcagccatacaccataggtaaatgcgtgtatctgtgttctaataaaactttatttatacagacaagcagtgggctggatttgccccatggttcatagtttgcaaacacctagtatagtttttaagacaacggatgctgggtccagactacttgtgtttgaagcctgaccctattgggtttctccggacaagttacttaacctttctgtgact--gttttctttatctgtaaaata--atgatatagtactaccctctagggggttgtgaagattaaataaattaacaaatgtaatgtactttgaacagtacctggcatagaaggtgg---ctggataaaagtGTTTGCTCTCG a score=1359 s hg19.chr6_ssto_hap7 3472707 20 + 4928567 TGTTTACGGTTGTTATCACT s canFam2.chr12 4556340 20 + 75515492 TGTTTACAATTATTATTACT a score=47215 s hg19.chr6_ssto_hap7 3473024 836 + 4928567 ACTACTATTTTATTACTATCCACCTTGACTATTGCTGCAGCTTCCTTATTGGGCTTTTCACCACCAGTCTTGCCTCCCTTTTCTGCTTCTTT----------TTCTAACTGCTGTTTGTACCCAGATCCCCACCACGATGACTTGTACCTCAATGCCAGCAGCTTCCTGGCCCTGATCAATGGGGAAAGAGACCATCCCAATGCCACAGGTGAGAATTCAGGCTCCTACCTGTGTTGCTTTTTCTGCTTCTTTGACTCCCTATG----TCTCCCTCTCCAACCTGGCCTGACCCCTGTGGCTGACTCAGC-------CTCTCTTCTTCCCATCCTACAGTATGGCGGAAGAACTTTCTGCGTGTGGGCCACCTGGTGCTGATTGGGGGCCCTGATGATGGTGTTATTACTCCCTGGCAGTCCAGGTAATAAGGGATTTTGTGGCCTGAAGATTGGCTAAAGACATCCCCCAACCCCAGTTGGTCTTTATCTCATGCCT-AAACTGGCCTGCTCCTTCCACTGTTCAGTTAGTGCTCCTCCCCCCATTCATCATGTCACCCAAGACCAAAACCTGGGAGTCATATCCCAACCCCTTGTATCAAGCCAGTCACTAAGTCCTGCTGACTCTTC-TCCTCTCCATCCCTATCACCCCCTCCCCCACTTTATAAAaacttttaattttgaaattcttatagattcataggaaattgcaaagatagtatagcgagg-------------cccttcacccagcttcccccagtggttgcatcctatgtaattatagcacagtatcaaaaccaggaaatt---cacattggttcaatGTGTGTGTGTAGTTTTATACCATTTTATCACATTTCCTACCACCTC s canFam2.chr12 4556360 854 + 75515492 GTTACTATTATATTAGTATTCACTTTGTCTATTACCGTAGGCCCCTGATTGGTCCTCTGGCCTCTGGTCTTGCTTCTTTTCCTTGCTTCTCTGACTGTATAGTTCTAACTGCTGTTTATATCTAGACCCCCACCATGATGACTTGTACCTCAATGCCAGCAGTTTCCTGGCCCTGATCAATGGGGAGAGAGATCATCCCAATGCCACTGGTGAG-ACCCAGGCTCCTATC--CGGTCCTGTTTTTGCTTCTCTGACCCGCTATGTTTCTCTCTCTCTCCAACCTGGCCTGACCCCTGTGACTGACTCTTCTTTTCTTTTCTCTTCTTCCCAATTTTCAGCATGGAGGAAGAACTTTCTTCGTGTGGGCCGCCTGGTGCTGATTGGGGGCCCTGATGATGGTGTCATTACCCCCTGGCAGTCCAGGTAATAAGGAACTGTGTGGCCGGAAGATTGACTAAGGACACTCCCCACCCCCAG-CAGTTTTTATCTCATTCCTGAAATTGGCCTGTATCTCCCACTGTTCAGTTCATGCCCTACCCTCTATGTATCCTGT-------GACCAGAACGTGGGAGTCATCCCCCAACTCCTTGTATCCAGCCAGTCATTAAGCCCTACAGACTCTACTTCCTCTCCATCCCTA-------AACCGCTGCtttgtaaaaactcttaacttacagataattacagattcacaggaagtggcaaagatagtttagagaggtcctgggtatgtctccttctcccggttcccccccatgattgcatcctatgtaactacagcacgacatcaaaaccaggaagttgTCCTACTAAGTAGGATATGTGTGTATAGTTCCATGCCATTTTAT---GTTTCCTACCACCTC a score=29383 s hg19.chr6_ssto_hap7 3473860 662 + 4928567 TTTACTTACCTGGACTATTATAACAGCCTCCAGCTTTGTCCCCTCCATCCTATTCCTTAGAAAAAAATCCATGGCTCCATGGTACTATGTGCTTGCCTGTGTTATAGGTCACCATGTGTGATCTGTAATGTCACCTGAGCTACTTGAATTGCtcaacaaatatttattcaacattatggg----cgcaggc-ttgttctgggccctagggatgcagtggtaaataaaagagaagtccctaatgttatgtagcttatattctagtttgtaagatagctgat---------------------acatacatacaaatatatatgtcaggt--------aataaggcaggggaa--aggattagaggatgtccggggcctagtttcaatagtggccgaagaagtcctcctggaaaagtcaccattcaattagagactgaaggaagtgaaggagggagttgtgc-----tctgggtggaagaaccccccagggagaaggtctggcacctgcagaggccctgaagcacgtgtgagcaataaggaggccagcatggctagtgcacaaggagctggggagaggacaggagaggagctaaaagtggtagcaggggaccaggcatgtcaaaccttagcaggtcaaggtaaggcccttgatatttTTTTttcttttttttgtgataaaatatacataacataaaa-ttgccatt s canFam2.chr12 4557434 684 + 75515492 TTTACATACCTGGACTTCTATAATATCCTCCAGCCCCGTCCCCTCCATCCTGTTCCTCAG--GAAAATCCATGGCTCCATCGTGCTATGTGTTGGCCTATGTTGCAGATC-TCATGAGTGGTCTGAAATGTCACCTAAGCTACtttagttgctcagcagatatttattgagcactgtatgtattcccaggcactgtgctaggccactgggatgcagtggtaaatgaaagagaagtccctgctattatgtagcttatgatctcgtgtgggagacagataataaatgtaaatataaaaaaaaaaaataaatgtaaatatatatctcgggtggagataagataaggtaggggaaggggggttggaggatgactgaggcctgtgtcagatcatggccagataag---tcctagacgagatgccatttgagtagaaacttaaggaagtgaaggaaggagctgtgcaacaatctgaggggaa-aacgactcagggaaagag--tagcacgaacaaaggtcatagggcaggcatgagaaatgaagaggccagtgtgtttagagctcagggagcaggggagaaggtgggagaggagatgaaggaggtagcagggagccagtgatgtggagcctttgtggggtaaagtcaggcccttgattccttttttTTC-----------TAAAATATACATGATAAAAAATTTACCAAt a score=2959 s hg19.chr6_ssto_hap7 3476187 45 + 4928567 GGATTTTAAGACCtttctattttgaaataatttcatacttaagaa s canFam2.chr12 4558830 45 + 75515492 aaatcttaaggcctttttattttgaagtaagttcatatttaaaaa a score=6507 s hg19.chr6_ssto_hap7 3476507 277 + 4928567 gttaccaaaatagcaaaaagcagtcatttatactcctcacctagatttcgcaaatgttaacattttgtcatgtttacattaatatcttttttctctaaatatatat-----------------------------------------------acatttatttAT-------------ATACGTTAATGT----------TATA---TTTAAATAT---------------AAAC--ATAGATTCAAATTTTCCTGAAT--ATGCGCTCac-----aga--ttattcaaat-ttttccaactgtccttacagaaaaaaatatacagtggaagatccaaatcaggatcttgagttgcatgatcttgttacgtctcttt s canFam2.chr12 4558875 377 + 75515492 gttaccaaggtattataagacaaccttgtgtgctcttcccctaggttttctaaatgttaacatttcaccatgttaatgtcctcatccattctctgtaaatatatatatggggcataggtgtgtttgtgaaccagttgagaggaggttgtagacatgtctctttatccctaaaacttcagtatgtcagtgtctgtttcctgtatattctttacatatccagtacaattaccaaaaccaagaaattgacattatcctacatggatagggtcactgtatagaccttactcaaatattttccagttgtcctcctggggaaaaaaatccaatgcaaaatccatcctgggatcatgtgttgcatttacttgttatgtctcttt a score=6132 s hg19.chr6_ssto_hap7 3477521 159 + 4928567 Agtaatgcatttttgatggggtttctacagaagtgaggtcgtatcttcagtgtatcacct-catgaagtacattatatcCAGTAAGGTAGTTTTGAGTGTCCTCCCTGCTACCTGTCTCCCCAGTAGGCCTTGGGTTCCTTTGGGACCTTAGCCCACCTT s canFam2.chr12 4559376 154 + 75515492 ggtgacacattttcga-ggggactctgcagaagtcatgctgtggcctcagtgtatcacttccataagctacatgatatccagttAAATA--TTTGAATGTCTTCCTTGCTGCCTGTTT---CAACAGGCTGTGAATTCCCGAAGTCCTCTGGCCTACCTT a score=129932 s hg19.chr6_ssto_hap7 3478024 2360 + 4928567 GATTTTCTCCAGCTCTTCTGATGACCTCC-----------CCCCAAATCTCTTTGTAGCTTCTTTGGTTTCTATGATGCAAATGAGACCGTCCTGGAGATGGAGGAGCAACTGGTGAGCCCCCTGGGATTACTTCCC----CTTCTAGCCGCTGTCCCACCTTATTCCAGAGCCCTCTCTGTGACTCCTGAGCTGAAGGGTTCACCCTGTGGGGAG-----GAGGTCCAGGATCCCAGCAGTAACTCACTTTGTCTCTCCTTGTGTCTCTCTTCCATGCTTCCACGCCCCTTCGACCACCTTGAAGGTTTATCTGCGGGATTCTTTTGGGTTGAAGACTCTATTGGCCCGGGGGGCCATAGTGAGGTGTCCAATGGCCGGTATCTCCCACACAGCCTGGCACTCCAACCGTACCCTTTATGAGACCTGCATTGAACCTTGGCTCTCCTGAGGATATATTCAGGGG-TCCCCAGGAACTCCTCGGTCCAGAGACCAAGTGGTGGCCTTGGAAAGCAGATGTCAGGCTTTGGTGTGCCTGTGACCACCTCATTGCTCCCATATTATCCCCCATTTTTAGTAGAGACGGGGTTTTAGTAGAGACTTGGCCTCCCAGAACCCCCTTCCTCTGCTCCTCCATGAATGACAATTCCAGGCCTCCCCTACCTCATGTCCTCTCATTTGGGGGATTGCTCCGTGCTGTCCCTTTCTCTCAAGGCCGAAGTTGGGAAGTGAGAAACCATGTTTTTAACTTGTGGCTGCTT---TTGCTGCTGCTGCTCCTCCGTATCTGGCTGTATGGGTGGAGAACCCACCCCCTGCCCACCACAGGGGTCTCCTTCCAGGCCACTCAGGACATTTTTAGCTTCTCTCCTCCCCATGTTCCCTTTTTTCTCTAAAGTCCCCTGACATCAGCCCTCCCAACTCCTAAGAGGGACTACCCATGAGAGTGGGGTTCTGAGGCTCCCCTATGGGGACAGTTCCGTTCTTGAAGTGTCAGTGTTGGGGAATATCTGTGGCCTATGAGGCCCATCTCAGGTTTGGGGATCCCCCAGTCCCTATGATCAGTGTTGGAGTACCCCCCTGGGAGAGCCTAGTTTCTTTGAGGCCCCAGGCCCTCTTTTAACTACCTTTGAATAGGTGTTATCCCTGTATTTATGGAAATAAAGTTCCATTTCCTCAGTGTGACTTGGCTCATTTCCAGGTGGAGGGGACCTGGCTCCCCAAGGAGGGTGGGGGCG--GAGCCTGAGGCCTGGGTGCCCAGATGCCTGGTCTAGGGTGGGGACCCCCTTGGTGTTTCCGCTCTCTCTCAATGCCCATTCTTTGTGGGTTCCTGGTTCTCTGCGGGTTCTTTCCTGCTGAAGACAATTCTCTTCCTCTCCCAGTCCCCAAGACTGGGGGGTTAAGCTCAGGGCTCCAGTGGTTTGGGCCTCAGCCTCATGGGTGGAATGCGCCTGCCACCCCCAGGCTAGACGAGGGGGCAGAGGGTCAGGGTGGGCATTCGTTGTGCCGCTTT-TGAGCTTTGTGGGCCAGAGCTGGGTGTAGGGCTGGACAATGAGCCTCCTCTTCCTTGAAAGAAGGAATTTTGGCTGAGACAATAGGGCCCTGTCTGTTCTGGCATGGGGGGTGGTGGCTGACTCAATTCTGTTCC-CCCTAAGCCCTAACAAATGTCATGAAGAGAGGGGGGCAGTTTTCCCCTTGGTGCCCTGGGCTGCCCCCCTGCCCCTTTGTGACGACTTGCCCTTCTAGCTTTCCTCAGCTGATCTTGCTTTTTCTCCCATAACCTGA-ACTGCTTTGTTCCCTGCAG---CTGGTTCTCTCCCTGCCCCCTAACTCTCCCCTAGTCTGTTTTGGGTTCAAG----------------GGGGTACTGGTGGTGTTACAGAGCTCATAGCTTCT---GATCTGGGGAGTCCAGAAAT-AGGGGCCTCAGAGGGTTGGAAAGATACTTCTAGGGAGCCCTTTGCTGGGATGGGGATGAGGGTAGTGGGACTT-GACCCTACTGAGCTGACCCTGCTGGAGCTAAGGAGGAGGCTTGTGGGAGGGGGC-AGGAATGGGAGGACTCTCTGGCCCAGCCCCTCCTCTCCTTCTTAGCCTGCCAGGCCCACCCACCAGTCTGAGCTGCTTCTGCTGAGGCTGGTCTGCTTGAAGCCTCCCAGGAGAAAGAAGCCAGGTGGGAATGGAGAGAGAGAGGAAGGCAAGTGGGGAGAGAATTTCAAATGGGGAAAGAGTGGGGTTTACTCAGAGCCTTAGGGTGGGCATGAGTTGCGGGGTGTTTTGTTGGAGCAAGGGATGTGCATTTAGGGCGTTATGTGACGGTGTGGGTATATGAGGGGAGTAGCAGTGTGTGAAAGGTGTGGAGTTTCCAGGTGCTTGGTTT-GTGTGTACGGTGTGAA s canFam2.chr12 4559530 2207 + 75515492 GATTTTCTCCAGCTCTCTTGATAACTTCCTCCCCTGCCCACCCTCAATCTCTTTGTAGCTTCTTTGGTTTCTATGATGCAAATGAGACCGTCTTGGAGATGGAGGAGCAACTGGTGAGCCCCCTGGGATTTCTTCCCACTTCTTCATGCC-CTGTCCTTCCT----------CCCTGCCACTGAC------ACTGAAAGGTTCACCCTGTGGGGAGGGGACGGGGACAGGGACAGCAGCAGGAGCTCACTTTGTTTCTCCCTGTCTTTCTTT-------------GACCCTTTGCTCACTTTGAAGGTTTATCTGCGGGATTCTTTTGGGTTGAAGACGCTGTTGGCTCGGGGAGCCATAGTGAGGTGTCCGATGGCTGGGATCTCCCATACGGCCTGGCACTCCAACCGGACCCTTTATGAGACCTGCATTGAACCTTGGCTCTCCTGAGGATGTCCTCAGGGACCCCCCAGGAACTCCCCAGCCCAGAGACCAAGCGGTGGCCTTGGAAAGCAGATGTCAGGCTCTGGTGTGCCTCTGATCACC-CATTGCTCCCACACTGCCT---------------------------GCACCAACCAGGGCTCCCAGGA-CCCCTTCCTCTTCTCC----TAAATGACAAATCCTGGTTTCCCCCACATCACGTCT---------GGGGTTTGCTCTGTGCTCTCTCACCGTCCCAAAGCAGAGGTTGGGAAGAGAGAAACCAGGTTTTTAACTTGTGgctgctcctgctgctgctgctgctgctCCGTCTCCGGCCGAACAGGAGGAGAACCCAGTCCCTGCTCACTACGGAGGTCTCCTTCTAGGCCACTCAGGACATTTTTAGCTTCTGTTCTCCCCATATTCCCTTTT------------------CCTCAGCCCTCCCAACTCCCAGGAAGGACTACCCATGAGAGTGGGGTTCTGAGGCTCCCCTATGGGGACGGTTCCGTTCTTGAAATGTCAGTGTTGGGGAATATCTATGGCCCGTGAGGCCCATCTCAGGTTTGGGGATCCCCCAGTCCCTATGTTCAGTGTTGGGGTACCCCCT---GGGAGCCTAGTTTCTTTGAGGCCCCAGCCCCTCTTTTAGCTACCATTGAATGGGTGTTAACCCTGTATTAATGGAAATAAAGTTCCATTTCTTCAGTGTGGCTTGACTCATTTCCAGGTGAAGGGGACCCGGCTCCCCAAGGAGGGTGGAGATGGAGAGCCTGAGGTCTGGGTGCCCGGATGCCTGGTCTGGGGT-GGGACCCCCTTGGTGTTTCCG--CTCTCTAAATGCCCATTCTGTGTGGGTTCCTGATTCTCTGTGGGTTCTTTCCTGCAGAGGACAATTCTCTTCCTGTCCCAG--CCTAAGCTTGGGGGACTGAGCCCAGGGCTCCAGTGGCTTGTGCCTCAGCCTCATGGGTGGAATGTGCCTGCTACCCCCAGGCTAGATGAGGGGGCTAAGGGTCAGGGTGGGCATTTGTTGCACCCCTTTATGACCTTTGTAGGCCAGAGTTGGGTGAGGGGCTGGACAATGAGCCTCCTCTTCCTTGAAAGAAGGAATTTTGGTGGAGACAATAGGGCCCTGTCTGCTCTGGCTTGGGGGGCGGTGGCAGACTCAACTCGCCCCCACCCCAGGTCCTAACAAATGTCATCAAGGAATGGGGGGCAATTTCCCCATAAGGCATTGGGC-ACCTCCCCGCCCCCCT------------CTTCCTTTCTTTCTTCAGCTGATCTTGCCTCTTCTCCCATGACCTGACCCTGCTT--TCCTCTGCCAGCTCTGTCTCTCTCCCTGCCCCC-ACTTCTCCCCCAGCCTGTGTTGGGTTGAGGGGTGTGGCAAGGGCCAGGGGGACCAGTGGTGTCATAGAGCCAGTGGCCTCTGCCGATTTGGGGAGTGTAGGAAGAAGGAGCCTCGGA--GTTGGAAATTTACTTCT-GGGGGCCCTTTGCTGGGGCGGTTGTGAGCGTTGTGGGACTTGGATCCCACTGAGCAGTTAGAGCAGGAGCTATGGAGGACGCTTGTGGGAGGGGGCGGGGAATGGGAGGATTGTCTGGCCCAGCCCCTTCTCTCCTTCCCAGCCTGCCCCACCCACCCACCAGTCTGAGCTGCTGCTGCTGAGGCTGGTCTGC-TGGAGTCTCC-------------------------------GGAGGAAAAGACAGGTGGGGAGAACATGTCACTGGAGGA-----------------TGAGCCTTAGAATGTGC----GTTGGGAAGTGTTGTGT--GAGTGAGGGGTGC-------------------------TGG-----TGAGAGAGGCAGCA----GGGATAGGTGC--AGTTTCCAGGTCCATGGTTTGGGGTGCAGGATATGAG a score=1933 s hg19.chr6_ssto_hap7 3480723 49 + 4928567 TTTTGAAGGTATGAAGTTATAAGAGGGCATGTTAAAGACAGGAGGGTTg s canFam2.chr12 4561755 49 + 75515492 CTGTAGAAGAGTTAAGATAGAAGAGGGTGTGTTACAGATTGGAGTGTTG a score=338761 s hg19.chr6_ssto_hap7 3481335 6200 + 4928567 TAAGGGGAGGGTTGACTGTGTGTCCCTCCAGGTTGTGCAGAGGGGATTAGAAGTAAGTAGGTTAGAGGGGAGGTGGAGGGAGTGTGCTGGGGTGTGAGCTTTTATGATGCTGAAAGGATCATGATATGCTAAGGACAGGATAGTGTTGGGT---------TGTACACACAGGTGTAGGCAATCCTGGTGGCTAG------TATGTAAAAGTGAATGTCCTGACTCCCTTAGAGGGTACCTGCAGAGTGCCCTTGGAGGGACTAGTGCTGGAGAAATTAATAGGAGAGGGGACGGGCATCCATTAACCTTTTCTTGCCTGCAGCCTGTAGGGTCCAGCGTCAAAGCGAATCATGGGGTCCAGGGCTGAGCTGTGCACTCTCTTAGGCGGATTCTCCTTCCTCCTGCTACTGATACCAGGCGAGGGGGCCAAGGGTGGATCCCTCAGAGAGAGGTGACAACAGAGGGGGTAGGGCCCGGGGTGAGCTCTTCTCAGGAGCCTTCTGCTGGGGGTGGGGCTTCACAGGAGGCAAAACATAACTGT-AAGTTTAGAATGGGGGTGAGAGGCTGTCATCTGGAGGGAGAGCGGGGGGCCTCAGTAGCCTCTTGAGGGAAGTGGGACTCCTGGCTCCCCAGGGCCTGGCCTACTCAATCTCTCCCACCTCATCCTCTGGCATGGACGCAGTCAGGGAGTCTGCTCCAAGCAGACACTGGTGGTCCCGCTCCACTACAACGAGTCCTACAGCCAACCAGTGTACAAGCCCTACCTGACCTTGTGCGCTGGGAGGCGCATCTGCAGCACTTACAGGTGAGGGATGGGGAGATGGGACCC----------------------CAAGAACCCCAACTAGGACCCGT-ACTCAGGGTCCTGAGCCGGGCGCTGTGTTCCAGGACCATGTACCGCGTTATGTGGCGGGAGGTGAGGCGGGAGGTTCAGCAGACCCATGCAGTGTGCTGCCAGGGCTGGAAGAAGCGGCACCCGGGGGCGCTCACCTG---TGAAGGTGAGGCTGGGTCTT-CCGGGCCTTGCGGGAGGCGCGCCCCACGGAGCTGGGGAGCTGGGTCGTCGGTTTGAGTCTGAACCCCACTTCCTCTGTCCTCAGCCATCTGCGCCAAGCCTTGCCTGAACGGAGGCGTCTGCGTTAGGCCTGACCAGTGCGAGTGCGCCCCCGGCTGGGGAGGGAAGCACTGTCATGTGGGTGAGTCAGCTTGTCCT----------------CCCCACCTACCCAGGTGC-----TTGCCCCCGCCCCCTCTC---TCAGCCCCTTCCTTTTTTCGGTAACTAGACGTGGATGAATGTAGGACCAGCATCACCCTCTGCTCGCACCATTGTTTTAATACGGCAGGCAGCTTCACCTGCGGCTGCCCCCATGACCTAGTGCTAGGCGTGGACGGGCGCACCTGCATGGAGGGGTCCCCAGAGCCCCCAACCAGTGCCAGCATACTCAGCGTGGCCGGTGAGTGGGCAGGAGTACGGGCCACCCGAGGGACTCGGGACGGGCGTCCGGGCTCG--GGTAGT-GGTCACACTCTTGGTCTCCTTTGTCCCTAGTTCGGGAGGCGGAAAAAGATGAGCGCGCTCTGAAGCAGGAGATTCACGAGCTGCGAGGGCGCCTGGAGCGGCTGGAGCAGG--------------TGAGCCAAGCCTGCTGGGTGGGGCGAGGCCAGACGTCACTGTCAATAC-CCTGAGGCATCTCTTCCTTTCTAGTGGGCCGGTCAGGCTGGGGCCTGGGTCAGAGCGGTGCTGCCCGTGCCGCCTGAAGAGCTGCAGCCAGAACAGGTGGCTGAGCTGTGGGGCCGGGGTGACCGGATCGAATCTCTCAGCGACCAGGTGCTGCTGCTGGAGGAGAGGCTAGGTGCCTGTGAGTCCTCACACTCCTCCCGCCTTGACTTCTAT-------------TCCCCAACTTTCCCCAAGACCCCTCTCCA-TTCAGGCATTCCCTCTTTCCTCCAAGCCCCTCTCCAACATTCACTATCCTCATGCC-TCTCCACTTTACCATCGTTC------TCTTCTGAAATCCTGTCCCCAGCCCAACAGTTTCACTTATTGTTTGGTGAGAGTGGCAGTGTAGTCCACT------CCAGGCTGACCACAGCCACTGTGTCTG-------CCATGTCATTAACCAGGCTCCTGTGAGGACAACAGCCTGGGCCTCGGCGTCAATC----ATCGATAAGAAGCCTCTACAGCACCCCTGCCCCCTAATTTATACAGAAACCGGACCCACTAATCCTCTGGGATTGGCCGACT-GTGAGCTGCAGATAAGGCTATCAGCCACCAAAGAGCAATGAACAATGGAAACTTCAGAGAGCTGAAGAAAGGGGGAGGCCTGTGTTCTTGGCCTGCCCCTGAGTCTTCTGGCTGGGGGCAGGTTGCCTGGGCAAGAACTGCTTCTTCAATTCCTTAACAAATGCAACCACCAA-CACCCAGATCTCTCTCTCTCTTTATTTTCAGT---TTTTTTGCTGTTATCCAGATAATTAATAAAAACCAACCACGCAAAACTGGGTCCCACCCTCTCCTTTTGCTCCCAGCCTACCTCCCCAGTTGTGGGAACAGGTCTGGAGTGAGAGGCAGGGAGTGGCTAATGCCACCAGGAAGAAATGAAAACTGGCTCAGAGAGGGGGAAGCCTCAACAGAAAAAGAAATAAATTAAAAGCCCTCCTATCCCCTCCAGCCAGGGTTC-GTTCCTTTCCCCAACTCCCCAGGGGGCAGAAGTGAGTGCAGCACCTGATGTCTGCTTCTTCCCCTTGTGTCTGGTGA-GATGGTGCAGCAGGGCTGCAGGGGGCTGGG-TGGGGTCATGTCCACTGAAGAACTGTACTATGGGGACA--GAAAACCAGAAATGTGGAGACTGAACTGGTATCCCAGAGAGTGCACGACCCTGGGCATCTGGGCAAGGGCAGGCATGAGACCTCTGAATTAGAAGGGTCCAGCCCCCACTGACAGGAGGCTACACTGGGAGGGAAGGTGAAGGTGCTGAGGAAAGCTCCCAGGATGAGCCTGGGAGTGCTTCAGGTATCAGCTTCCAGCCAGAGGGCGAGAAGTCCTCCTCACAAATGGATGAGTCCATTGAATCCATGGACTTTGGAGTGGGGGGGATTTGTTCCAAAGAATGGATGAGTCCACTGGCCAATGTGGGGTAGAGGGGTAGAGAAGACCACATAGGAAGAGACTCCACTGGGGATGGAATG----TTCCCCTCCCTTGTGTAGGCTGAGTCACTGGAGATGAGGGGGAGGCAACTGTCCCACAGACAAGACAGTA------GGAGGTGGGGGTCAAGAGTGGAAACTGCACCGAGGCA--AGAGTCCATGGATGGGGCCAAGAGGGGGC-AGGAGTGGCGCTGTATCCACATTCACTTCAGAAGTTGAAGATTCCAAAGAGGAGAATAAGTGGGGAGAGGGGAGACAAGGAAGAGGGTTTGGCCCTGCTTCAGGGCCCACTGGGTGGGTAGGTGTGGGGAGGAAGATGGGGACAGATGGGAGGAGAGCTCAGAGCCAGGGTTCACCCACCGCCCCCAGGCTTCTTCAGATAGTCACCACCACCCCGGCCATCAGTGGAGATTTCCCGGAAAACAGTGAGCATGGAGTGCCGGACTCTGTCAGCCAGAGCTGGGACGTCATCTGGTGTCAGCCCTTCCGTGGGCACTGGGGGCAGCACCCGCACCTGACATTGTCCT--GGGGCAAGGGGAGCACCATCATGGCCTGTCCACCCAGGTCTTTGCCCACAGGTGGGGCCCAGCTTCCGAG------TGATACT-CTTCCTCAACCTTTCAGTTCTCTTCCCCCAACCCTGGACAACCATCCCTGGGCTTGCCAGCTGCCACTT---CTGAGGCCCTTCTCCTATACAAAGCCTTCTCCA-ATCCCCAGTTCAGACATCTCCTCAGCACCCCTCCAGCCCCCCTCCTCTGGGTTTGGCATTTACTGCTGAATGAGTGTTATTCATTACAGCTTTGTGCACACAGGCCTTATCTTTCCTGTTAAGATTAGTAACAGCCTCTCTTGGTGGGACCAAGTGCTACCCATCTGGCAGGGTATGGTGGGTGCTTAGTAAAGACTTATTGGCTGATGTggggttagactagatgactgtgtagacatctcatggctctgacactgaatgatccCCCTGCCTCACAGGGATGTCCTCCCAGCCT----------------CTCCGGACACACCCTACCCCAGAACTGCTCAAAGCCCTCACCCGAGGTGAAGCGACGCTCCTTCTTGCAGTAGAAGTCTTGGTAGGAGGACATGACTATGGGGACAATGGGAACCTGGGGAAGGGTTAAAGCAGGTCAGTCCACAGCTCTCTTCAGAGACTCCTACAATAAGCCCCTGCCCAGAGATGAGGGAATGGTGGGGGTTGGCA-----------GCTGAGTAGCAGAACGAAGAGCAGTAGTCACCTGGGCCTGCACTGCAAGATGGAAGGCGCCACGTTTGAAGGGCAGCATGGAGCCATTGTGGTTTCTCGTTCCCTCAGGAAACACCCAGACCCTCACCTGGGGGAGAAAGAGGGTCAAAGAAGACAAATACATATGGAGGAGTCAG-------------AATAGGTGTGATGTTATAATGGGACCTTTGAGGCCCACTGGCCCTGCATATCAGTTTATTTACAACTGTTCTACTCTGTATCCCTCCAATCCCCCATTTCCCCAGGATGACTCACGTCCTGGGTGAGCAGGGTCTGGGCGACCTCAGACATGACACTGATGGCATCCCCCGTGCGCTTCCGGTCGATGAAGATGACTCCTGCCAGCCAGCAGGCCAGCCCGGCAGAGCCAGCCCACAGTAGCTCGCGCTTGGCAATGGGCACACAGCGGCCTGGCAGTACCTCCATCATCCCTTGGGCAGGGTGGGAGTGGGTGAGGATCGGGGTGGAGGCAGAGTGTCACAGAAGGCAACCCACCTCACCCAGCTCATCACCCTCTGGTAGGGACTGGAGGTGAAGGAGGAGACTAGGC--AGGGAGGGGGGC-------CCCAAGTGAAGGAAAGGGTGACCAAAAGTATATGTACCCTGCTTATGAGGGCAGTTCTACCCAGGGAATGAAGGCCTGAGTGGGAGGCAAGGGGGCAATGTCCCAGAGGAAGGGGAATTGAGGATCTCTAGGAGAAGATATTCTAGGGAAGGTTTCAGGAGGGGAGGCATGGCTGGGGGAGGTGTGCCCTGTGGTGGGGTCTCACCAAGCAGATCGAGAGAGCTCTGGTGGTTGGAGACAACAACATAGGGCTGCGAGGGAGGGAAGTGGTGAGCCCCTCGCACCTCCACTCGGATCCCGTACAGGTATTTGATGTGGAGCAGCATTAGACGCAAGATCCTGTGGGGTCATGGCAAGGGGTCCCAGTGGGATCCATTGATGTCCATCT-----GCATGCCTCAGCTCCCCCCACCTTACTGTCTTTCTGACCACCTTTGCAGTCCTCTCCCCATTCCCTGTCTCTGGTCTCTCTCAGTCTTTTCTACACACACCATGCCCCCTTCCCCCAATCCACTACTCACTTTGTACCCTTAGGTTCCCTCATTGCCCAAGACCCCTTGCCCCTCACTTCATGTTCTCGACGTTGCGTCCTCGCACGGCACACACAGGGATGGCGAGCACAGCCAGGAAGAGGATCCAGCCATTGTAGAAGGCCATCTTGAAGAAGTACTTGGCACTGGGGCTGCAGAACCACAGGGTGGgcagcaggaagagcagcagcaggaagagcagcagcagcagcaTCCATGCCCCTGGCCACAAATCCATTCTGGCCACCTGCAGGGGATGGGGCAAGGGACAATCAGCCTGGTTTCTGGAGGAG-AGTGGGGTAGGCAAGGCACAGAAGGCAGGGCTGGGGGCTGGTGCTATGAGGACAAGGGCCTGAGACACAAACTGGGG-CAGGGGTCTCATTGAAACCTTCCCAGGAAGGCTCTCTAGGATGAGGGTGGT-GGAGAAAGAGCTCAGGACTGCTCTCCCACCACTCTTCCCAAAGGCTCCGGATATATTC----AGACAAGAGACACAAGACACAGACATCTACAATTCACAGATACCTGATAA-TAAATGACAACAAGaataatagctaacacttgtagctggtaagggtcttataatggtctatacttgtgctgtccgagaaagtagccaccacctacatgtggct-------acttgaaatgcag-ctagtctgaactgagatgtgctggaaatgt-aaaatacacatcagatttcaaaga--ctgaataaaaaacaaaatgtgagata-tccattactaatcttttatgctgactacattttgaaattataatctt s canFam2.chr12 4561804 6188 + 75515492 TGGAGGAAGAGTTAGCTGTG--------------GTGTAGAGGGGA--------------------------GGGGAGGGAGTGTATGGGGGCGTGCACTTGCAGGATGCTACAGGGACCGTG-TGTGCT-------GGATGAGG--GGGTCCCCTTCCATATACACACAGGTGTAGACAATCCTGGTGGCTAGTGTAAATGTGTACAAATAAGCATGCTGACTTCCTCAGAGCGCACTATCAGACTGCTCTTGGAGGGGCTGGTGCTGTAGCAGTC-ACAGGAGAGGGGAAGGACCTCCGTTAACCTCTTCTTGCCAGCAGCCTGCA--GTTTGGAGTCAAGGAGAATCATGGCGTCCAGGGATGAGCTGTACAATCTCTTAGGTGGACTCTCATCCCTCCTGCTGCTGATGTCAGTCCAGGGGGCCAAGGGTGGATCCCTCAAAGAGAGGTGATAACACAGGGGGCAGGGCCAGGGGTGAGGGCT--TTGGAAACC--CTGCTGGGGGTGGGG----------GGAATGGCAAAACCATGGAGTATAGAATGGGGGT--GAGGCTGTCCCCTCCAGGGAGG--GGGGGGCCTCGGTTG-AGCTTGAGGGTAGTGGGATTCCTCAC-CCCCAGGGCCTGGCCCACTTAGTGTCTCTCCCCTCCTCT----GCATGGGTGCAGTCAGGGGGTCTGCTCCAAGCATATGCTGGTGGTCCCCCTCCATTACAACGAGTCCTACAGCCAACCAGTGTATAAGCCCTACCTGACCATGTGCAATGGAAGGCGCATCTGCAGCACCTACAGGTGAGAGAT-CGGAGCCTGGACTCTGGAGTCTTTCAAGAAGAAGTTCAAGAACCCAGACCAAAGCCCATAAACCACTGTTCAGAACCAGGC-CTATGTTCTAGGACCACATATCGAGTGGCATGGAGGGAGGTGAAGAGGGAGGTGCAGCAGACCCATGTTGTGTGCTGCCAAGGCTGGAAGAAGCGGCATCCAGGGGCGCTCACCTGTGATGAAGGTGAGACTGGGTCTTCCCAGGCCTGGGGACAGGGGTGCGCTGCGGGGCTGGGGAGGCTGGCTGTTGGTCCTGTTTTGAACTGCCCTTCTGC-ACCCACAGCCATCTGCGCCAAGCCCTGTCTGAACCGAGGTGTCTGCGTCAGGCCAGAGCAGTGCCAGTGCGCCCCAGGCTGGGGTGGGAAGCACTGTCACGTGGGTGAGTTCCCTTCCTCCTCCAGTGGTGCCAGGACCTCACTCCCCTTGGGGCACCAGCTCCCCCCCCCCCCTCCCGCTTCAGCCCTCTCCTCTTTCTGTTAACTAGACGTGGATGAATGTAGGACTGGCGTCACCCTCTGCTCACACCATTGCCTCAACACGGCAGGCAGCTTCACCTGTGGTTGTCCCCAAGGTCTGGTGCTGGGCCCAGATGGGCGCACCTGTGCAGAGGGCAACCTGGAGCCCCCAACTGGCACCAGCGTCCTCAGCGTGGCGGGTGAGTGGGTGGCAGTA-----------GGGGTGTCAGTGAGGGC--CCGGGCTCAATGGCAGCGGGTCACGC---TGCTCCCTTTTGTCCC-AGTTCGGGAAGCAGAACATGATGAGCACGCCTTGAGGCGGGAGATTTGGGAGCTGCGGGGGCGCCTGGAGCGACTGGAGCAGGTAAGGGTAGATGCCTGGGCCAAGCCCCCTGGGTGGGGTGTGCCC------CACCTCCAATACTCTTGAGG--TGTCTTCCTTTGTAGTGGGCCCGTCAGGCTGGGGCCTGGGTCCGAGCTGTGCTGCCCATGCCACCTGAAGAGTTACAGCCAGAACAGGTGGCGGAGCTATGGGGCTGGAGCGACAGGATTGAGTCTCTCAGCGACCAGGTGCTGCTGCTGGAGGAGAGGCTAGGTGCCTGTGAGTCCTCAGTCCCTCTCTGCTTGAACCCCCATCCCCCTATGGCTGCCCCCAGCTCTCCCAGACACCTTTCCCTAGTTCA-----CTTTTCTTTCCCCCAAACCCTTTCTCAACACTTAGCTTCCCCATACTGTCCCCAGATAGCTACACTTCATCCCTTTCTCTGGTACCCTGTCCCTAATC---------TATTTATTGCTGGGTAAGAGTCTC--TGCAGTACCCTGGCAGCCCCAAAAGTCCACAGCCAATGTGTCTGCCTGCCTCCTTGTCATTCACCAGGCTCCTGTGAGGACAATAGCCTGGGCCCAGGTCTCAATCGGCAGCCGATAAGGAACCTCTCCAGAACCCTGGCCCTCTAATTTATACAGAAACTGGCCCTGCTAATCCTCTGGGATCAGCCAGCTGGGGAAGTGCAGATAAGGTTATCTGGCACCAAGAAGCAATGAGCGATGGAAACTTCCAAGAGCTGAAGGCAGGGGGGAGGATGGGTGCCTTGGGCCCACCCGAGTCTTCTGGCT-GGGGCAGGTTGCCTGGGCGAGAACCA---CTTCAACGCCTTAACAAATGCAGCCAGAAAGTGCCCAGATCTCTCTCTCTCTCAATCTTTATTCTGTTTCTTGCTGTTATCCAGATAATTAATAAAAACCAACCACACAAAACTGGGTCTCGCCCTCTCCTTTTGCTCCCAGCCCACCTCCCCAGTTGTGGGCACAGGTCTAGGGTGGGAGGCC-AGAGTGGTTAATGCCACAGGGAGGAAATGAAAACTGGCTCAGAGA-GGGGAAGCCTCAAAAGAAAGAGAAATAAATTAAAAGCCCTCCCACCCCCTCCAGCCAGGGTTCAGTTCCTTTCCCCAATTCCCTAGGGAGCAGAAGTGAGTACAGCACCTGATGTCTGCCTCTT-CCCTTGTGTCTAGTTACAATGGTACAGCAGGGCTGCAGGGGACTGGATTGATGCCAGGACCACTGAAGAACTGTACCACAGGGACAGGGGGAAGCAGAAATGTGGAGACCAAATTGGCATCTAGGAGTATGCTCACCCCTGGGCACCTGGGTATGGGCAGG-ACGAGACCTCTGAGTAAGAAGAGTCCAGCCTCCACTGATGGGAGGCTCCA-TGGGAGGGAGGGTGAGGGTGCTGAAGAGTGTTCCCAGGATAAGCC-AGGAATGTTCCAGGCATC-GCTTCCAGCCACAATGTGAGGAG---TCCTCACAAATGGATAAGTCCACTGAATCCATGGACTT----GTGGGAGGGTATTGTTCCATAGCATGGACGAGTCCACTGGCCAATGTGGGGTGGAGAGGGAGAGAAGATCACAAAGGAAGAGGGTCCACTGGGGAAAGGATGGTGTGTTCACTCCCTTGGGTAGG-TGAGCCACTGGAGATGAGGGGGAGGCAACTGTCCCACAGACAAGATGGCACAGGAGGTGGGTGGGGGTC-AGAGTGTAGACTGCACTGAGGCAAGAGAGTCCATGGAGGGAGCTGGGAAGGGGCAAGGAGTGGTGCTGTATCCACATTCACTTCAGAAGTTGAAGATTCCAAAGAGAAGAAC-AGTGGGGAGAAGAGAAACAAGGAAGAGGGCTTGGCCCTGCTTTAGGGCCCACTGGGCTGGGAGGTATGGGT-GGAAGAAGGGGATCATTGGGAGGGGAGCTCAGAGCCGGGCCTCGCCCACC-CCTCCAGACTTCTTCAGATAGTCACCACTGCCCCGGCCATCAGTGGAGATTTCCCGGAAAACGGTGAGCATGGAGTGTCGGACTCTGTCAGCCAGAGCTGGGACGTCATCTGGTGTCAGCCCTTCTGTGGGCACTGGGGGCAGCACCCGTACCTGACATCGTCCTGAGGGGGGTGGTGAGCACCATCATGGCCTGTCTGCCTAGGCCTCTGCCCACAGGTGGGGCACAATTTCCGAGCTCTCCTGCCACTCCCTCCCCAACCTTTCTGTTCGCTTCTCCCTACCCTGGACAACTGCCCCT--GTTTGCCAGCTGCTACCTGAGCTGAGGCC---CTCCTGCACTAAGCCGCCCCCGCCCCCCCCATCCAGACA---CCTCAGCACCCTTTCTGCCCCCGTTGTCTCAATTTCACTTTTACTGCCAAGTG--------TTATCATAGCCTTGCACACACAGGCCTTCCTCCTCCCACT--GGACAGTAATGGCCCCTCTTGCAGGGACTGAGCTTTACCCATATAGCAGGGTATGTTGGGTGCTTAATAAGTATTTATTAGTTGGTGTGGGGTCACACT-GGTGATCCTTTGGACATCTCA--GTCCTGGCACTGACCAATCCTCCC-TCTCATGGGGACATCCCCCCAGCCTTTCTCCCTCATGGCCCTTCTGGCCACCCCCAGCCCCAGGTCTACTCAGAGCCCTCACCCGAAGTGAAGCGGCGCTCCTTCTTGCAATAGAAGTCTTGATAGGAGGACATGACTATGGGGACAATGGGAACCTGGGGAAGGGGAGAAGCAAA-CAGCCCACAGTTCCCTTCCAAGGC-CCCATGACAAGCCTCTGAC-----AGAAAGAGATGGTGGGAGCCGGCAGCACAGGGGATGCTCAGGAGCAGAAGGGGAAGTAGTAATTACCTGGGCCTGAACTGCAAGGTGGAAGGCGCCACGTTTGAAGGGCAGCATGGAGCCATTGTGGTTTCTTGTGCCCTCAGGAAAAACCCAGACCCGCACCTGGGGAAGACAGAGAATCAAGACATACGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAATAGTTGTGACGCTGTAATGGGACCTCTGAGGCCTGCTGGCCCTGCATCTCAGTCTATTTACAAGTGCTCTACTCCACAATGCCCCGACCCTCCTGTTCCACAGGGTGACTCACGTCCTGGGTGAGCAGGGTCTGGGCGACTTCTGACATGACACTGATGGCATCCCCAGTGCGCTTCCGGTCGATGAAGATAACTCCTGCCAGCCAGCAGGCCAGTCCAGCGGAGCCAGCCCACAGCAGCTCACGCTTGGCAATGGGTACACAGCGGCCTGGCAGTACCTCCATCATCCCTAGGGCAAAGGTAGGATGGGTGAAGGCCATAGTGGAGGCAAAGTATTATGGGAAGCAGGTCA--TCACCCA----------CACTACGAAGGACTGGAGATAAAGGAAGAGGC-AGACTGAAGGAGGGGGGTGGGAAGACCTGAGTGGTGGAAGAGGTGATTAAACATATAT-TAGCCTGTATATGAGGGTAAGAAGTCCTGGGG---GAAGG---GATAGGGGAGCCAGGGGGCGACGT-TTAGATGCGAGGTAGGTGAGGACCCCC---AGAGGAGATTCTGGGGA-------AGGAGGAAGGGCATGGCTGGGGGAGGTGTGCCCTATGA-GGGATCTCACCAAGCAGGTCGAGTGAGCTCTGGTGGTTGGAGACCACGACGTAGGGCTGTGAAGGAGGGAAGTGGTGAGCCCCACGCACCTCCACTCGGATCCCGTACAGGTATTTGATGTGGAGCAGCATCAGGCGCAAGATCCTGTGGGGTCATGGCAAGGGGTTCCAGCAGGACCCACTGACGTCCATCTAAATAAAATGCCTTGGTTCCCCCTACTCCACTGT------------CTTTGCAGTCCTCTCCCC-TTCCTTGTCCTTGGGTTCTCTTCACCTTCCCTACAAACCCCA-----CATCCTCCCCGTCCACTGCTCACTTTGGACTCTTAGGTTTTCTCATCACCCAAAACCCTTTGGCCCTCACTTCATGTTCTCAACGTTGCGTCCTCGCACAGCACACACAGGGATGGCGAGCACAGCCAGGAAGAGGATCCAGCCATTGTAGAAGGCCATCTTGAAGAAGTATTTGGCACTGGGGCTGCAGAACCACAGGGCAGgcagcaggagcagcagcagcaggaggagcagcagcagcaCAGTCCATACCCCTGGCCACAACTCCATTCTGGCCACCTGCAGGGGACAGGGCAAGGGACAGTGGGCCAGGTTCCTGGAGGGGAAGTGGAGTGGGCAAGGCACAGCAGGCAGGGTTTGGGGA----GCTATGAGGACAAGGGCCAGAGATACAGGAAGGGGTCAGGGCTCCCATCTAGACCTGCCCAGGAAGCCTCTCTGGGATAGGGGTGGGAGGAAGAGGAGTTCAGGACTGCTTGCCTACCCCTCT----------CCCAGAAATATTCACAAAGACAAGAGACACAAGACATGGACATCTACAACTCACAAATACATGATAAGGGGACAATAATAATAGCAACAGCTAACACTCATAGCTGGTAA-GGTCTTAGGatggtctacacctg-actgtctaatacggtagccaccagccatatatggctcctgagcacctgaaacatggcctagtttgagtggagacgtgctggaagtgtaaaaatacacattagatttcaaagactctgaatg------aaaatgtaaaatattcccttaataatcttctgtattgattacattttgaaatcttaacctt a score=5157 s hg19.chr6_ssto_hap7 3487834 162 + 4928567 ttataatcttttggatgttatcagattcaagaaaatatattactaaaattaatttcactct-----ttttgccttgtaaaaatgtggctaccataa----aaaaattacattgtggcttgcattatatttctg-tagaacagtactggtctatacattaagttaaactctta s canFam2.chr12 4567992 159 + 75515492 tcagaa------------tactgggttcaatagaacatatcattaaaattaatttcaccttgttacttttgaccttttttgacatatctaccagaaaattaaaatttaca-tgtggtttgcattatatttctgttggCTTAGGGCTGGCCtatagactatgttaaaccctta a score=61885 s hg19.chr6_ssto_hap7 3488014 1376 + 4928567 tctagaaagtactattactatttacattttataggaaataggcccagggaggctaaataacttacctgaggtcatacagct--cctaaacagcagtttctaggttaaatctaagccgcctgtgttcctaaccactccattacgctgACACTGGTATGTATTGCATATATATATACGAACACAGCACACAGCATATATGGTGATTGTGACAGAACACTCACAGCCATATACCCAAGGGCCAAATGGCAAGATTAAAAGTTCGTGTCACTAATGC--CAACAGACAC--ACAGTCATACAAAGACTAACATGTTCACACATAGACACAAATTTATAATTACACC-CAGTGACAGATAAAAGAAT---GTAAATGCATAACTAGAAAAATCCCTCTCCACCCAGGCAG------------CTCCCCTATTCCTAGGTAAACTTATGGACATACCTGGAATAGCTACAAAGACCAATCCTACCTC--CAGACAGGCAAACGAATCCTACTACCCTTTCCCTTCCTT-----CTAGTGACACTTTGCGTGGGCAGGTACAGTGTGTGAGGCCTCACCAAGTGAAAAAAGGAGGGAATGGAGTAAAGGTGACCTAACAGCACTTGCCCTGGGAGAGGAAAGGGCTCAAGAGGAAGAGAGGCAGGAACACAGAACCTGTGTTCTAGGTTCTTCCTCCTTCCTCCACTCTGCCCCAGTGTTGGGGGCAGGGTAACAATTCACAAAAAGGGTGTTCAGGCAAATACCTGTCATTCCTACTGAGGCCACAGGCACTGTCTTCCCATGATGGGAAGGGCTATGCTCAAAGGTAAGCCTATTGCCAAGCG--AGAAGGTAACAGGCAATAGAGGAAACAGGAGACCCTGCCAGTTGGAATACCGTAGGCTTTCTGAGCTGCTccatcccactgccccta-caagttcagaacagcatcatttctcccctgaactatgtggagtaggctcccaactc----cctccaatccatcttccacgtagcaaccacagagatttttctgttagcacagatttttctgaaacacagagcatttccctgtcttgcctaaaggctcttcttgataagttgacttctgcttacatcttcgaccacatcctcacaaaactctt---tgttccagtcaaactgattcacttcagttcctcagac--accatgatctttcatgcttccccaccttgaacatgctgttccctttggctggaatgc----ctgtctcttctcctgcctcacacagctcagtgtcaccttttggagggctgcctgaacccctccaggcctgtgctttccttacacttttatCTTGATCAGCGGGTCTCGAAGTAtagaaatgcaaattattagacttcaccccagatctactgaatcagaaattctgggcattaggtcc s canFam2.chr12 4568348 1357 + 75515492 ttaagtatgaacta-cacaatttacattttataggagagaggcccaaagaagttaaataacttacctgaggtgatatggctcccctaagaggcacctcctagtttaaacctaagcggcttgtactcctaaccacg--gtcacgctgctgcCTGTATGTA-TACACACAGGTATACGCA--------ACAGCAGGTACAGTGA-AGGGCCAAAACACCCA----GACATTCTCAAGAA--GACTGGCAAGAATAAAGGGTC-TGTCACTAATGCAAAAACAAACACATACAGTCATGCAGAGACTGACCTGCTCACACCAGAAGGCAAACTTAAAATCACACCTTGGTAACAGCTAAAGGAATGTAGTAAATGCATAACCAGAAAACCCCCTCTCCACCAAGGTAGCTACCTCCACCCCTCTCCTGTTCCCAGATAAACCCATGGACATACCAGAAGCAGCTACATCTATCAATCCTGCCTCCACAGGCAGGCAAACAAATCCTTCTGCTCCCTTTCCCCCTTCTGCACTGGAGGCAACTGGGTCAGGCAGATACAATATGTAAGGCCTGACCGAGGGGGAAAAAAAAAG-GCAGAGTAAAAGAGACATCATACCACCTGCTCTGGGAGAGGAAAGAATTCAGGAGGAAGAGGTACGGGCACACAGAA-CTGC-CTCTAGGTTCTTCCTCCTTCCTCCACTCTGCCCCACTATTGGGGGCAGGGTCAGAAGTCAC-AAAATGGTGTTTAGGCAAATACCTGTCACTCCCAGCAAGGCTACTGGCACTCCCTTCCAATGACAAGAAAGTCTGTGTTCA-----AAGTCCCTTGCCAATCAGTGAAGGGTAATAGGCA--AGAGAAAACAGGAAACTCTGCCAACTCTGAAGCTGTAGGCTT--TGAGCTGTTCTAGCccactgcccctgttaagtctggaccagcatc---tctcccttggactatttgcaatgggctcctaattctgctcttccaattcatcatccatgtagccgccacagagatctttctg-taacacagat------------ccgagcatttccctGTCTTGTCTGCAGGCCCCT-TAGACAAGTTGACTTCTGCTTCCATCTTTGGCCCCGCCCCCACAAAAGCCTTTTGTGCTCCA-------------ACTCCAgttcctcaggcataccaagatctttcatgctactgtgctgcaaacaggctgctccc-ttggctggaatgcccttccgcctcttcACTTGCCTCACACAGCTGAGCGTCACGCTTTGGAAGCCTTCTTGAACCCCTCCTGGCCTGAGTTTTCATTACACTTTTATCTTGATCACTGGTTCTCAAAGTGtagagatgcgtattcttggacctcgcccccgatctcttgaatcagaaattctgggccttgggccc a score=329054 s hg19.chr6_ssto_hap7 3489516 6953 + 4928567 agcaatctgtatttcaacaagccctct-ggtgagtctgatgtgcgcctgaatttaagaaccactgATCTTGACAACACACtatg------tgttgactggcgtttttgtttccctccttaggctgtaagcagcttaaggacagggactctgtcttatctccagtgcc-aggacaataggagatggagtaggtgctcaataaacacttgctgaacagatTCTAAGGCTGTATACCCACCCATAGAGCCACAGTTAATGACAGAGATGGCGGTTCTGATCACAAATTAGATAGTTATCCTCTTGAGTAGAAGTGACTACTAAAAGAAGTCACTGAGAAAGTAACGAACACACCAAGCCTAATGGTAACCGACTCTGAATAGATACATGCAATACATAGCCATAATGAAGGCAGAGTAACAATAATCAGGAAGAGG----TCATCTCAC----AAGAGAAATGTACCGAAT-GGGATCAAGATGCCACA-GGGAAAGATGCTGCTCTCATCAAATGTGTGCCAACAGTGC-AAAGAATGGAGGATAATGTCCATAAATAAATACCAACAATGGGGTTCACAGCAGGATTGACCCTGTGACATGCATTGAGCT-CATGGACACAGACTGTACACAGCCACTGGAAAGATAATGTTTGTGTAGAGAGGTATGGGCCAGGGAGGTCACCAAGGTAAGGCATGCAGGGATGGTTCTTTGCAGACCTGGAGACCCAGTTACCTTCTTCTCTTAACACTTGATATTAAGTGACCCTCTTTGGAGAACAAAAGTCCAAGGATTTAGAAATGCAATGGAGGGCCAAAT---TTAATGAGCATACGGCTCACAAAATATACTGATGACAAATTTAT-------------------------AACACACATTCTATGGTCCTGTTACATCAGTGT----------ATCATGCAAAGGCGCATACACATGTGTTCTGTGAACTGTGACTGGGAAAACA----CAGCAAACAGGCCAATTCAGTCAGACATCAG-AGTGTGGGGTATTCAGCCAAGCCATGGGATCCCACACATGAAGACTACTGCAAATGGTAGGACCATGGACAT---------------GTCAGCCAAAGCAAAATAAGGTATATAACCTTCACATGCTGAAATAAACATGCCAAAACATAAAATGTGCAAGTAACATGAAATTATAGAACAGGTGCAATATATGAAAACTCACACACATGCGGTACTTAAAACATGTCAAAACTGGATGTGAGACATGGACACAAGAAT-GAAGAATGGGCAATTCTGATAGAAAATAACACACCATTTCTACACAGCCTATGGATAGCATTGGGACAACCTAGTTGCACACAAGCCATTAAACATGTCAAAGGCACACAGACTCAATGTAGAAAACATGG-CTCCCATAAGGCATTTGTGTGTCAGTAAGGGTCTAG--CAGTGTGGAAGGCCACTGAGAAACAAGAGGTCCTGTGCCTAGATGGAAACAGAGGCACCTAAGGGTATTCCTAAGAGGCAAATTCTGCTGG---------------------CCTTCTCCCCTC-ATGACCCTTCAAGAGTCATGTGGGGTCAAAGGGCAAGAAAAGGAATTGGGGAAGGTGTAGGGAATTCCCTCTCCAGGATTCCCTGTGCACGCTCCCAGTCCCAAATTCACAAGGGTTTCCATTTCTCCTCCCTCCCAGGTCTCTTCCATccttcctccctctcaggtcccctctcctatccccagcaaccctcttcccagtcggcccctctcctttccccagcaaccctctcccccagtcggccctcccagacccaatctctccccttcccctcatcctagtcgctttcagcaccctcttccctcctcctcccatccctttcccgcccACACCTCAGAGGGGTAGGGGGCCTGGGGGGCTGGCCCCCTCCCCAGCCAGGCTGCGGCAGCGGTGGTGGCGGATGGCTGTGTCTCTGTCTCTGTCGGGGTGTCGGTGCCAAGGGGGCGACGGGATTTGGGGGTGTCCTAGCCCCGGCCGATGGAGGGGAGGTGGGAGTGGGAGGTTGGGCCCATAGCGGTAGGAATGGTGGGGGGCTGTCCCCCCAGCACCCTCCCTCCCTCCCTTTCTGCTGTCTCTCTGAGGGCTGGGGCTGCTGCCGCCGCTATTCCCCCGCCACCCCTCCCCAACGCCTGCTGGTTTCCGGGGCCGGCCAGGAAGTGGAGGGCGGTGATGGGCAGCCTGTTTTGCCAATCGTCTCCCAGAAACTCTGGCATCTCCTCCCCACATCTACCAGTGTCCTCTTGCGAGCCCCGCCCCA-GGGCTCTCCCTCGGTCTTTGCC--------CCCATCTCTGGCTCCAGCTGCATCTTTTTTTTCTCTAACTCCCTTTCAGCTC----------TGGATCCCCTGGTGCTGTATTCCTCCTTCCGCACATTCCTTCCTTTATTCTCCATCAGCTCTCTTTTAACTGCCACTTTTACTTGGTCTCTTTTTTTCTC---AACTCCGGTTATCTGCTGCTTATTCCCCCCAACT-----ATTCTTAAGGACCCCTTTTCCCGTACCCATTCAATTCTAAACATTTATCAAGCATCTACCTACCATATGACAAGCATTAAGTTCACCTCTCTTCTTTTTCTCTCCAGGACTCCATCTCACT---CCATCTCACTCT--CCAGTCCTCTGGTCTGGTTTCCTTTGCCCTTTGTCCCTCACTATCTCCCAGCAGTCCAGCTCCCCCCTCCACCTGCCTTCTCTGGCCTTTAAAGAGAAGAGAT-CTCTTTGGCCTTATCCCTGACCCTTTCCTTTTCCATGCTC----TTTTACCTCTGTACCTTTTCTTTCCTACTTCCTTCGTATCAGTCTCCTTACTTGCCCAAGCTGAGACAACCCCTTCTCACAACATACAATAT----GGGTACATCTTTTCTTCCAATGGAAATTTGGCTTCAGGGGTGCTTTCTAGAAAAATAAAAAGT-----------------------------------------GAGGAAGAATGCC-GATTCCTCTGGAATGCGCGTGCCTCCTTAATTTGGTAGCCATGTATCTAGT---TTTCCACCCCCT---CTTCTCTTCCTCCAC-TCCCATTATCCCTT-TACTAGGATCATTCCATCACTTCACTCTCCTTCATTTCCACCTTTCCCTCTCAATATCTTCCTTCCTAAACCT---CAAGCTTCCTGAATCCTCATCTGCCCCAGTCCTTCTTTACGCAACTGCTAACTTCTCATCTTTCCTTACTCTTGAGTCACATGGGATCTTTTATCAAGGT----------------------------CCCCCCTCTAGCCACACCTTTACCCTGCATTAGTTTACATGCCCTCGGGAAGAGGAT-----------TGGTAGTGGGAGGACTGTTACCTAATTCTGCTCCTTTAGTCACAGTGAGGGTCAGTGATTGTAGGAAAAGCCCAAAC---------------TCCCCGGGGTCCAACCTGGGAAGAAGACCCTATTTCTGATGGGCAAATTATAAAGAGGAAAGGGCGGGTCTAGCCT-------CCGCGGGTCTCCTTAAAAGGGGCGGGCTTTGTCCCTTTTGCACC-ACTCACAAAGGGGTTGAGCCCAGAGCTTTCCTGCTCTGAAGGTTTAAAACGGAGTTGAAGTCAATCCTGTTCTACTCTGTGTACAACATTAAGAAAGGGGTGGGCCTTTAGTTCAGTTTTGCTCTGTAAATCACCTAATATGGGGAGGGCTGAGTCGTCCAGCCGAATGAGTTGGGTTAACACCAGCGCCGCAGATCGATGTTCCCACTATCCAAACGTCGGGCTAATCCCAGTTCTGCTCC---CTTAACTAAAAGGGAGGGGCAGACCCAAGTTCTGCTCTCTACGTCACCAAAGGAGGTTGGAGCCATTTTGAACCCTGCGACCCTAGTGTTTTCCCTCTTTTCCTAGCTCTTCGCCGTCTTTCCCGATGTCGGCCAATCAGGGGAAAAGGAAAAGGCCCAATCAG--CAGAAAGTCCACAGCTGAAGGACCCGGATGAAGCGA-GCCTAGGACTTTGAAGTGCAAGCCTCGCCAATTGTAGAGCAGTCACCATGGCGACAAGATAGGGGTGAAGAGGTGGAACAAGAGAAGGTTAAACCCTCACAGGATTGGCCCACCCCCGTCCCGCCGCGTGCTGCGCAGGCGCGTTTTACCTAACCACCATTTTCCGTCAAGTTTTAGCCAATGAGTTGATTTGGAGCCATACGCTCCAAAGTCCAATAGCAATCCGGACATTCTCTAAAAGAGGAAGCGAAGGAAAGAAAGGGGCTTATAGTGGGCGAGGTCTATAGGTAGTCCCGAGCAAATTGCTTATGG-CTTTGGTTATGACTGACAACTACTCAGACGAATAAAGCCCTCCTTGGCCAGGCGACAGCGTGTAGCGAGTTATTACCAATCCCTTGGCATTGCACATTGACTTAGACCGTATCAGCCAATAGCCATTGTGCGAAGGCAGGACTGCACTAACCTTTTCCCGCCCCTACCCTTTGGGCCAATCCTTTCTTTTGAATTCTTTGTGACTGGCAGGCATTCAGACCAATAGTGATTAGGAAACCTTGAAGCCTGCCCAACGATCGTGGGCAGGAGGTGGTTTCTGGTTTGTTGGGGCGTG--------TGTATGTGTATTTGGGGGGACTGAAGGGTACGTG-GGGCGAAACAAAACCGGCCATGGCAGCAGCGGAGGAGGAGGACGGGGGCCCCGAAGGGCCAAATCGCGAGCGGGGCGGGGCGGGCGCGACCTTCGAATGTAATATATGTTTGGAGACTGCTCGGGAAGCTGTGGTCAGTGTGTGTGGCCACCTGTACTGGTGAGAATCGAGGAGGGGGGCGGGAGGTGGTGGGTCTCGCTTATATACTGGAGAGGCTAGGAGCGAATAATCATACAGTCATACAGATAATCGGAGGGCACGTTCCCATAGGTGAAGCCCGACAGGAGACATAAGACTTTGCTGGTATGTGTGGGTGGGAGTAT--------AACGGTCGAGATCTGTGGAAAGAAAGGTCTTAGGAACCAGGAGCTGAGGCACGTGATGTGCTGAGAAGAGAAGGTGGGGCGGGG-AGTGGCAGGACAAT-------------GTGAGACCCGAGCCACCTTACCCCAGAGAAGTGAGGGGTCTTAGCTGTGCAGGTGGAAACAAGTGAGACACAAAGGTTAAGGGAGGCACGCATCAGTTGAGTCGGGGAGAACCAGGAAATAT-GGATCACATTCAGATGAGATCTGGGAGGGGGCTGGTATAAGGGCACTGTGGA--GAGGCAGACTTGAAAGGTTAAAGGGTCATAAAGATAGGGACATTATTGAGCTT---------GAAAGTGAGTAATGGGGGAATGTGCTAGTAAA-GGGGTTTGGTTT-GGAGTGATG------GGGTTGGGGTTG-----AAAAGAGGAGACCCAGAAAGAGGTGGCTGAAGGAAATTAGAAATTAACTTGAAAGGCAGAAAAGAGAGGGCACGAAAATTTGTATGTGTTTGTTGGGGAGAGGAGAAAGGAGAGGGTTGAGTGTGTTGAGGATGGACAGAGCTTTAGGTGTTGGAAGATCAGACAAGCAGGAAGGCTAACTAAGTTGGCTGGCATGGTAGAGGTTGCAGAAAATCTGAAAAGCAACAGCAGGT--TGCTTGGGAAGAGGGGTTAGATGGGATTCTGCGAAGTCTAGGGTCTGTGTCTCTCTTTTCTGTAGCTAGTTTGACCTTTTTTTTTTTTTCTCCCCCATCCAGTTGGCCATGTCTTCATCAGGTGCGTACTC--AGGAGATGAAGAGGGAAATGGGGAGGTCTGAGGAGCTGTAAGACCCTCTTGTATACTGGAAACCACCT--TTTTTCTCCCCAGTGGCTGGAGACACGGCCAGAACGGCAAGAGTGTCCAGTATGTAAAGCTGGGATCAGCAGAGAGAAGGTTGTCCCGCTTTATGGGCGAGGGAGCCAGAAGCCCCAGGATCCCAGGTGAGAGACTGGAGGTGTTGCTTAGGGAAGATTGAAGGCTTCTGCCCTTGGAAAACGGTGTGGAAGATGGGAGGAGAAAAATCCCTGTTAACTTTCTC---TCTCCACTTCCTCAGATTAAAAACTCCACCCCGCCCCCAGGGCCAGAGACCAGCTCCGGAGAGCAGAGGGGTGAGTCTTCTTGTCC-AGTTGTGTCCCTTCCTTGAC--AGATTTGCCGGCTTCCCGTCTGACTTTTTCTGCCTCCCTAGGGATTCCAGCCATTTGGTGATACCGGGGGCTTCCACTTCTCATTTGGTGTTGGTGCTTTTCCCTTTGGCTTTTTCACCACCGTCTTCAATGCCCATGAGCCTTTCCGCCGGGGTACAGGTAAGAG----TCACACTCAGCTCCCATCAGGGAGCCCTGTGAATCCCCTCAGGCCCCCTCCCAGCCTAGGAGCATATGCTT---CCACAGCTTTCCTCTCTCCCACAGGTGTGGATCTGGGACAGGGTCACCCAGCCTCCAGCTGGCAGGATTCCCTCTTCCTGTTTCTCGCCATCTTCTTCTTTTTTTGGCTGCTCAGTATTTGAGCTATGTCTGCTTCCTGCCCACCTCCAGCCAGAGAAGAATCAGTATTGAGGGTCCCTGCTGACCCTTCCGTACTCCTGGA----CCCCCTTGACCCCTCTATTTCTGTTGGCTAAGGCCAGCCCTGGACATTGTCCAGGAAGGCCTGGGGAGGAGGAGTGAAGTCTGTGCATA-GATGGGAGAGCCTTCTGCTCAGAGGCTCACTCAGTAACGTTGTTTAATTCTCTGCCCTGGGGAAGGAGGATGGATTG-AGAGAATGTCTTTCT----CCTCTCCTAAGTCTTTGCTTTCCCT--GATTTCTTGATTTGATCTTCAAAGGTGGGCAAAGTTCCCTCTGACTCTTCCCCCACTCCCCATCTTACTGATTTAATTTAATTTTTCACTCCCCAGAGTCTAATATGGATTCTGACTCTTAAGTGCTTCCGCCCCCTCACTACCTCCTTTAATACAAATTCAATAAAAAAGGTGAAATATATTGATGGGATCTCTTCCCAAGTTCGCCCCCACCCCC----------GACAGAAGCATCTTCTCCCCAACTTGAGTAGATGTTTGGTATAGTATGGTGAAGTATGGGGGTGAGTCCCTTTCCTTCAGGGCCCTCAAGGGTATAG-GGGTGAGGTTGTGTCTC--------------------ATACACACACACAGACACACA s canFam2.chr12 4569705 6917 + 75515492 aacaatctgtattttaacaagccctccaagtgagtctggtgtgcacacaagtttgagaaccactgATCTTGACACCACAGCGTACataactgctcactggcacttttgtttccttccctagtctgtaagcagcttgagggtagtaacgc----------ccaatacctgggacagaaggaggcagagagggtgctcaataaacatttgctgaacagatTATAAGGCTGGATACACACCCACACAGCCATAATTAATGACAGAAA---------TGATCAGGAATCCGATAGCTACACTCT---------GTGAA----AAGATAAGTCACTGAGAAAGCAATGAACATAACAAGCCTAACAGTAACCTTCTCTGAATATACACATACAATACGCAGTCACGTTGAAGGGGAAGCACCAACAATCAAGATGGCGCATCCCATCTCACACAAAAGAGAAACATACGGAATGGGGATTAACATGCCACAGGGGAGAGATGCTACTGTCATC-AATAAATGCCAACACAGCAAAAGAGTGGGGGA--------ACAGAGGAA-------------GTGCACAGCAGAGCTGACCCTGTGGCATGCACTGACCTCCATGAACACAGGCTGTCCACAGCCACTGGAGAGATCA--------------------GGCCAGGAAGGTCAGCAAGGTAAGGCACATGGGGATGGTTCTCTGGGGAAACAGAGGCCCCGTCACCTTTTTCTC-TAATGTATAACATTAAGTGACCTCCTCTGGAGCAGAAATGTCCAAGGACTTATAAGCGC-ATGGAGTGCCAAATGGGTTAATGTGCAGATGACTCACAAAATACACTGCCAATAAAATTATGAAATAAATAGTATGTGTACCCAGAAGCACAGATGCTGTGGAAGGGCCACATCAGTGTAAACATGATAAATATGTAAAGGAGCATGCATAGGTATGGTGTGAATCCTGACTGGGAAAACACATGCAGCCAATAGGCCAACCCAATC--ACAACAGAAGTGTGCACTAGTCCACTAAACCACAGGATCCCCCACACGAAGACTACCACACATGACAGGATCATGGACATAATAATATATGATACATGAAACAAAACAAATAAGGG---ATAACCTTTACATGCAAAAGTAAACATGCAAAAGCATAAAATGTGCAAAAAACACAAAACCACACAATGGATGCAATATATAAAAACTCAC-----------ATTTGAACAATGTCAAGACTGGACAAGAGACATGGACATAAAGATAGGAGAATGGGCAATTCTGATGGACAATA--ACATCGTTTGTCCACAGTCCACGGAGAGCACAGGGAGAGGCTAGCCGCACATAAGCCACTAAACATGTCAAAGGCACACGGACTCAATGTAGAAAACATGGCCCCCCACAAAGCATC--TGTGTCAGTAAGGATCTAGTCCAGTGTGGATGGCCACTGA-----AGAAGGTCCTGTGCCCAGAT-GAAACAGAGGTGTCTGAGGGCATTTCTAGGAAGCGAATTCTGCTAGGGGAAGGAGGGCAATAAACCACCTTCTCCCGGCTACAACCCCTCAAGAGTCACGTGGGGCCAAAGGGCAGGAAAAGGAACTGGGGAAGGTGTCAGGAATTCCCTCTTCAGGA--CTCTGTCCACACCCCCA-TCCCAAATGCAC-AGGGTTTTCGGATctcctccgtc-----tctcttccatccttcctcc--ctcagggcccctctcctttccccagcaaacctctccccagtccg---------------------------------------cctcccagacccaatctctcccccatccc------------ctctcggcaccctcctcccgcctcctcccatccctttcccgcccccacctcAGTGGGGTGGGGGGCCCGGGGAGCTGGCCCCCTCCCCAGCCAGGCTGCGGCAGCGGTGGTGGCGGGTGGCTGTGTCTCTGCCTCGGTCGGGGTGTCGGTGCCAAGGGGGCGACAGGATTTGGGGGTGTCCTAGCCCCGGCCGATGGAGGGGAGGTGAGAGTGGGAGGCTGGGCCCATTGCGGGAGGAACGGTGGGGGGTTATCCCCCTAGCTCCCTCCCTCCCTCC----CTGCTGTCTCTCTGAGGGCTGGGGCTGCTGCTGCCGCTATCCCC---CTACCCCTCCCCAACGCCTGCGGGCTTCCGGGGCTGGCCAGGAAGTAGGGGGCGGTGATGGGCGGCCCGTCTTGCCAATCG----------------------CCTCCCCGAATCGACCAGTTTCCTC--GGTGGCTCCGCCCCGCGAGAGCTCGGCTGGGCTTTGCCGGTCTCCGGCCTTCTCAGGCTCCAGCTGCATCTTTTTTTCCTCCAACTCCCTTTCAGCACACATGGCTCGTGTGTCCCTTGGTGCTGTATTCCTTCCTTGGCCCATTCC--------TTCTTCGTCAGCTCTCCTCTTCCTGGGAATTTCACTCGGTTTCTTCCTTTCTCCTTAACTCC-CTTATCTGCTGTATATTCCCTCCAACTCCCGACTCCTCCAAAAACCTCTTTCCTGTTCC----CAACTCCGGATATCT-----GCAGGTGTCTACTATATGCCAAGTA---------------CTCGTCTCCTCCCCGTGGCTCCACCTCCCTGGCCCCTCCAGCTCTCGCTGGCTCTCTGA--------CTTTTGCCCT---CCCCGCAC---------GCAGTCCGGCTCCCTGCTTCAACC-CTCTCTCTGGTCTTTAAAGAGAAGAGGTACTCTCGGGCCCTGTCCCTGCCCCTGTCC--TTCCACGGTCTTTATTTAACTTCAGTACTTTCGCTTTTCAATTTCCTTCCTGTCAGTCTC---AATCACTGAAGCTGAGACAGTGCCTCTCCCCAACATAGAATCTGGGCGGGCGCATCTT---TTCCAGTAGAAACTGGGTATTAGGGTTGCTTTAAAAAAAAATGagaaagaaacaaaaaaaaaaaaaaaaaaagagagagagagagagaaagagaaagaaCGCTAGATTACTCTGGGACGAGCATGCCTCCTGAATTTTGTAGGCATGTATCTGTTCCCTGTCCAGCCTCTGACCTCCTCTCGCTCGTCTTTCCACTGTCCCTTAAACCAGGATCATTGCGTTGCTC--CTCTCCTTGGTCTACACCCCTTCCCCT--AGAACTTTTCTCCTAAGCCTTTCCCGGCATCCTGTACCTTCA-CTTCCCCCGCCCT------------------CCTCTCACCTGGCCTCCCT----GGTCACGTGAGA-CCTTTATCTGGGTGCTGACCTGCCCTCGGCCCGAGTCTGTCCCCGCTGCCAGACACACATTCGCCCTGCTAGAATTTACACGCCCTGAGGTCGAGGATGTAAGGAACACTGGTA-TGGGAGGACTGTTACCTAGTTCTGCTCCTTGGGCCACAGTGA-GGTCACTGACTGTAGAGAAGGCCCAAGCTCGGGCCTGCCCAAGTCCCGGGGGTCCTACCCAGGAGGAAGACCCCACTTCTGCGGGACACACTACAGGACGGAAGGGGCGGGCCTAACCCCATTCCGCCGCGGGTCGC--TCAGGAGGGCGGGCCTTGCCCCCTCGGCACCTACTCACGAAGGGGT-------GGAGCTAGTTCGCTTTTCAGGTTTAAAACGGGGCCGGGGTCAACTCTGTCATCCTGTGT---CAACGTT-AGAAAGGTGTGGGCCTTGAGATC-----TGTTCTGCAAGTCACCTAAGGAGGAGCGGGCTGCGTCCCGCAGCCGAGGGAGGTGGGTTAACACCAGCGCCGCAGGTCGATGCTCGCACCACCCACACGTCGAGCTGATGCCAGTTCTGCTCCCTTCTTCACTGAAAGGGAGGGGCGAGCCCCAGTTCTGCCCTCTACGTCACCGAAGGAGGCCGGAGCCATTTTGAGCCCTGCGACCATAGCATTTGCTA-CCTCGCCAAGCTCTCGGCCGTCTTTTCCGATCTCGGCCAATCAGGGCTGCAAGAAACTAGCCAATCAGCCCGGAGAGACCGCAGTCGGAGGGCCCGGATGAGGCGGCGCTGATGCCTTTGAACCCCAAAGCCCGCCAATCGTAGAGCAGTCACCACGGCGACAAGACCGCGGCGAGGGGGTGGGGCCAGAGAAAGCCGAGCACTCTC-GGCCTGGCCCGCCCCT-TCCCGCCGCCTGCTGCGCGCGCGCACTTTGCCGAACCACCATCTTCCGTCGAGTTCCAGCCAATCCAGAGCTTCGGAGCTCTACGCTCCAAAGTCCAATAGGAATCCGGACGTTCTCGGAAAGGGGAAGTGAAGCAAAGAAA-GGGCTCGGAGGAGGCGAGGCCTGT--GTGGTCCCGGACCAATTGCTTCTGGCCCTTGGCCCTGACTGGCAGCTACTCGGACGAATCAAGCTCCCC--GACCAG--------GTCCAACGGA----CACCAATTCTGTCGCATGGCGTCCTGACGGAGA-CGCGCCCGCCCATCGTCGCTG-GCAAGGGCAGGCCTGCGCAGACCTCT------CCCTACCCTTTGGGCCAATCCTGGCTTTTAAA--CTGTGTGATTGTCAGCCACCCAGACCAGTAGTGTTTAGACAACCTCGAAGCCCGCCCAACGGTCGTGGGCTGGAGGCGGTTTCTCG-CTGTTGGGGCGTGTGTGTGTCTGTGTGTGTGTTTGGGGAGACCGAGGGGTACGTGAAGGCGAAAC---ACCGGCCATGGCAGCCGCGGAGGAGGAGGACGGGGGCCCCGAAGGGCCAAACCGCGAGCGGGGCGGGGCGGGCGCGACCTTCGAATGTAATATATGCTTGGAGACTGCTCGGGAGGCTGTGGTCAGCGTGTGTGGCCACCTGTACTGGTGAGGGTC-CGGCCGGGGCTGAAGAGAAATGGGGCTCGCCCCT-TACTGGGGAGGCTGGGGGCGG--GATGGCACG--CATACGGATAGTCGGCGGGCACATCCCCGTGGGCGAGGCCCG-----------AGGTCTCTG--GGAATGTGTGGGTGAGAGGGTCACATCTCCACGGAGGAGAGCCGTGTGGCGGAGAGCCCTAGGAACTGGGCGCTGAGGGGTGTGCAGTG--GTTAAGAGGCAGCAGGGCGGGGTGGTGGTGGGGGAACTACATCTGTCCAGGTGAGACCCCAGCCGCCTTACCCCGGA-AAGTGA-CGGTCTTAGTTGTACAGGTGGAGATAGATTAGACTCCAAGGTTAGAGGAGGCACGCCTTAGTCGGGTACGGGAGACCGAGGGAATGTAGGATCGCATGCAGATGAGATCTTGGTAGGGAGTGGTATGACAGACCTGAGGACCAGGGCA---CTGAGAAATGAAAGGATGGTGGAAATAGGGACTTGATGGAGCCTAGAAGAGAGGAAAAGGAGTAGTGGGGGCAGGTGCTAGTAAAGGGGGTTTGGTTGAGGAGTGATGCGGGCAGGGCTGGGGTTGGGGCTGAAACAGGAGATCTAGAAAGCTCTGGTTGAAGAGACCTGGACACTAAGTTCAGAGGCAGAAAAGGGAGGGGAC--------ATGTGTGTTC----------AAGGAGAGAAGAGCGTTGAACCT-CGGAGGATGAATATTACTTTAGACGTTGTAAGATCAGAGAGGTGGGAAGG----CCAGATTGGCTGGCATGGAATAGGTTGTCAAAAACATGAAAAGAAACAGCAGGTAATACCTGGGAAGAGGGGTGCGATCGGACTCT--GAGGTC--AGGTTCGTGTCTGTCTTTACTGTAGCTAGTTTGACCTTCTTTTTTT----CCCCCCATCTAGTTGGCCCTGTCTTCATCAGGTGCGTACTCAGAGGAGATGAAGAGGGAAATGGGGAGGTCTGAGGAGTTGAAAAACCCTACTGTGAACTGGAAACCACTTCATTTTCTCCCTCAGTGGTTGGAGACCCGGCCAGAGCGGCAAGAGTGCCCAGTGTGTAAAGCTGGGATCAGCAGAGAAAAGGTTGTCCCTCTTTATGGGCGAGGGAGCCAGAAGCCCCAGGATCCCAGGTGAGAGAGAGGGGGTGGTGCTGAGGGAAGATGGACTGCTTCTGGCCTGGGAGTGGGGCGTGGAGGGGGAGAGGACATTCCTTGCTGCTAGCCCTAGCCAGTCTCTCATTCCTCAGATTGAAAACTCCACCCCGCCCCCAGGGCCAGCGACCAGCTTCAGAGAGCAGAGGGGTGAG---TCTTGTCTGATTTGTGTTCCTTCCTTGCCAAAGACCTGCCCAGTTCTCCTCTGACTTTCTCCACCTCCCTAGGGATTCCAGTCATTTGGTGATACCGGGGGCTTTCACTTCTCATTTGGTGTTGGTGCTTTTCCCTTTGGCTTTTTCACCACCGTCTTCAACACCCATGAGCCATTCCGTCGGGGTACAGGTAAGAAGAGCCTTCCCTCAGCTCCAAGCAGGGAGCCCTCTGAGTCCCCTCAGGCCTTTTCCCAACCTAGGAGTGGATGCTTCTCCCACAGCTTTCCTTTCTCCTACAGGTGTGGATCTGGGACAGGGTCACCCGGCCTCCAGCTGGCAGGACTCCCTCTTCCTGTTTCTCGCCATCTTCTTCTTTTTCTGGCTGCTCAGTATTTGAGCTTTGTCTCCTTCCTGCCCACCTCCAGCCAGAGGAGAATCAGTATTGGGGGTCCTTGCTGACCCTTCCTTACTCCTGGCCCCTCCCTCCCAACCCCTCCGTTTCTACTGGCTAAGGCCAACCCTGGCCACTTTGTAGGAGGGTGTGGGGAGGAGGTGTGACATCTGTGCAGAGGATGGGAGAAACTTCTGCCCTGA-ACTCGCTGCGTAGCAT--CCTAACTCCCAGCTCTGGGACAGGAGGACAGACGGAAGAGGATGTCTGTTTCTTCCCTCTCCTGATCTTTTGCTTTCCCCCACATTTGTTGATTTGATGTTGAAAGATGGGCAAGGCTCCCACTGACTC-TCCCCTACTTTACCCCT------GTTGACTTAATTTTTCTCTCCCCAGTGTCTAATATGGGTTCTGATTCTTAAGTCCTTCCTTCCCTTCACTACCTCCTTTATTATAAATTCAATAAACAAGGTGAGATGTACTGATGGGAGCTCTGCCCACCTTTGTCCTTACCCCCTTCCTTCCAGGACAGGAGCA---TCTCCCCAACTTGAGTAAATATTT-GCACGGTGTGGGGAAGTGTGAAGG--------CTTTCTTCAAGGCTCTGAGGGATTCAGAGGGTGAGGGCGtctctctctctctctctctctcacaaacacacacacacaaacacaca a score=4314 s hg19.chr6_ssto_hap7 3496469 73 + 4928567 AGAGCAAGATGTGTCAGGTGTTTAATCATCATTGTGGGGGGCTCTGGTTGTAGAAGAAAGCTTGGCAAGGTGG s canFam2.chr12 4576948 72 + 75515492 AGAACAA-ATGGGTGAGGTGTTTACTTATCACTGTAGGAGGCTCTGGTTGTGGAGGCAAGTTTGGTGAGGTGG a score=36911 s hg19.chr6_ssto_hap7 3496557 660 + 4928567 AGATTATACAGGAGAGAGTTGGTCTGAGGCCAGAACAGTTCAAGGGAAAAAGAAAAGGGAGCTGATGGATGGGATCTGTCTGTGGGCCCCTCAAGGCCCTCCAGTACTACTCTCGCCTGCCTCAGGTTCCTCCGACTGATTCAGTTCTGCACG------CTCCTCCTCTTCCTCCTGGTTTTCTGGGGCCTTCC---TGAGGAGAAAGATTGGGGGGAATG--------------CGGCACGTTGTCGTTCCACCCCCCG-ACCCCTCTTCGCTTGCTGCCTGGAAGCCCTAGGTCTGAGGGGTCTGGCTTTCTCCACTCACCTCTCCTCTCCTCGGCGTTGCCGCCTTTGCCACAAGATGACCCCAATGAGCAGGGCGGCTGTCCCCAGGCCTCCCAGGATCCCCAGGGCCAGGGCTAGAGTTCCCAGCCCTGATCCTCCCACAGAGCCTGTACGGAGACAGGGAAAATTGAGAGCACAGCCACCACCACTCACCATTCCTTTCTTGTTGACCATCCCCCCAGTCACATGTGTTGGGGGCTATCTTCTGCTTCCCTGACTTTATCAAACCCCTCACCTGCAGTTGGCCCCTCCTCGCCTGGTTCTGGAAGACAAAGTTGGATCCAGTCAGAAAGGAAGACTTCGGGTTGAGAGAGGGTTATTTAGTGGGAGCCCCAGTGGAGt s canFam2.chr12 4577025 658 + 75515492 AGGTGATACAGGAGAGAATTGCTCTGGGGACAGAAGAGAGCAAGGG-GGAAGAAAAGGGAGCTGACAGATGGGGTCTGGCTGGGCGCCCCTCATGGCCCTGCTGCACCGCTCTCAGCTGCCTCGGGCTCCTCTGACTGATTCAGCTCTGTGCGctcctcctcctcctcctcctcctGGTTTTCTGGGGCCTTCCTGGTGGGGAGGGGGATTGGGGAGAATTGTGCACATGGTTTCTAGCACTTCATCATTCCTCCCCCCACACCCCTC----CTTGCTGCCTGGAGGTCCCAAGGCTGAGATGTTTGGCTTCTTCCACTCACCTCTCCTGTCTTTGGCGTTGCCGTCTTCGCCACATGATGGCCCCGATGAGCAGGACAGCTATCCCCAGGCCTCCTAGGATCCCCAGGGCCAGGGCGACAGTTCCCAGCCCCTGCCCTTCCACATAGCCTGTGGAGAGATGGGCAGAAGTGAGGGCCCAGCCCCTACCACTCACCATTCCTTTGTTGTCGACCAT-CCCCGGGTCA----TGTTGGGG----CCATCTGTTTCC------------AAGCCCTCACCTGTGGTTGGCCCCTCTTTGTCTGTTTCTGAAAGACAAAGTTAGAGTAGGTTAGAAGGGAGGGTCTCGATTTGAGAGAAGGCTATTTAGTGGGAGCCCTGATGGAGT a score=281946 s hg19.chr6_ssto_hap7 3497546 5415 + 4928567 TTTTTTTAGCTCAGAGGGAAGAAGGGAGAGGCTTGGCTGCTCTCTTGGCAGAATTTGGGTGGGGCAGGGGAGGCTTGGGTGTGGGTGCATGGAGGGAGAGGTGGGGTGGCTGTTAGGGATAAGGCCAGAATGGGGCAGGAAATTAGAGCCTGTGCTGTCCTGCACCCTAGTCCCAGGGTCTGTAGGGCTTGGGGAGAGGTCTCACCGATGATGCTGATGCTGACAGCACGGCTTTCCTGGGGCCCGTGGCTGGAATGGGTGGCCACACAGCTGTAGGTTCCCTGGTCCTGAGGCCCTATCTCAGGGAGGATCAGCACAGGGCTGGGGGGAAGGGGCAAGGGCACACCCTGGTGGG-GGAAGGGGAGAGGAGACTATTT----CAAAACC----------------CTTGTCTTTTTGTCTCCATATCTTCAGATACCCTCTCTTCCTCCTCAGCTCCTAGCCTGCCTTTCCCTCGTTAGCCCTCTGCCCTCCCTGTTGCTAGTTATGGTTCACCCTACCTCCCAGC-------CCCTCTCTCCAGGTCACTCACATCCTTCATCCAGTGGATTTGAGGAGAGGGCTGGGCAGGGACTTCACAGGTCAGGGTTACGGTTCCACCAGGAGCTACTGCTCCACCTTCTGGCTCCACCACCAATTGGACCTCCTCCAGAGGCACAGGCTCTGGGAGTTGGAAGGGTTTTGAGGTGGAGAGTTACACTTGTGAGTGATCCCAGTGGCCATGGGCTTGA-CTCCCTCTTTCCCTAAGGGTCAGACTTCCAGAACGTGCTCACGTGAGCTTGGGGCCCTCCCCACCTATGCTCACCCCAGACACGGGGCTGGATGGGGGCTGTGCGCAAGGCCCGGTGTCGGGGAAGGCCTGGGCTGAAGCTACAGGAGAAGGTGGGACGGGGATCTCCTCCCCGGGCTGGGGTCACCATTAGCTCCGACTGCAGTGTGAAGAGCCCTGTCTCAGGGTGTCTCCTGGTCTGTTCCTTCACAGATACTCCTAT------GATGGGAGGATAAGACAAATTATCCCAGGGTGGGTGTGGGAGTGAGATCAGGGAGAAGGCAGCTTG--GGGGGCACCTTAGGACTCACCCTTCTCATTAGGCACCAGGGGCTTCCCATCCAAGTGCCAGCTAAGAGTCCCTGCAGGGTAGCTTCCCTCTGACACACATGTCCCCACCTGGGGAAAGAGTGGTGACCTCAGAATCCTTTGAAAATGAGAGATGCCACACACCCACACCCACACACACTCGCCTCCTG-TTCACAGGGCCGTTTTCTACTTCT----CCTGCTTTC--TTCCACTACCTTATTGGGAACACCAGCCGTGAGTTCAGAGGCAGAATCTACAATTTCTGGCTTCCCAGGAATCTCTGAAGGAG-GAAAAATCCAGTCAGAGGCTGTAATTGTGAAGGTTCTCAAACTCTGTATGTGGAAATGAGGCCAGTGGAAGTCAGAGGCCCTCATGGGCCAAGGCTGGGGTTGAAGGCTTTTTCTTAGGTAAGAGGGAGGCCTTGGAGAAGACCCTGGAATTCTTACGGTAGACACGGACTCGGTAGTTGGACTTGGTCTCCTTTCCATTCCTGTTCATTGCCTGGCACCGGAAAATCCCCTCATCCTGGATCCCGACAGCCGGAAGGAAGAGGGAGCCGTTGGGAAGGACACGAGCCACACTGTCCCAGGGGCCTCCTCCCTGGGGAGACAGGACCTTCCAAGCTTCTGTCCGGCCTGTGTTCTAGAAGCAGAGAAGCAGGGCCTAAACAGTGCAAGGCCTTTGGGAAAGGAC-TGTGAGGCAGAGTGACGGGGATCCAAATCATTGCTGGTCTCCCTGGAAGTTGGGAG-----GCTGCAACAGGAGCCCCGCTTACCAGTTTCCATTCCAGCCGCTGGGGTGGTTTCTTGGGGGCCCCCTTACACTTCAGCACCAGTGGCTCGCCAATCCGGGCTGTGATGTTTTGAGCACCTACTACTGCCCCTGGGAGATAGCACCATGGTAGAGGGGTAGGAAGGGAAT-GAGGGCTAACAAAATTTGGACAGGGTGGGTGAGGGACCTTGAAAGGCACTTCCTCGGGTTCTGGGAAAAGTTCTAGGACGACTGGGGTGTGGGGTTAAAGTGCTTTCTGCAGGGAGGGTCAGTGGGGTTGAGGG-AGTGGCTCACCCCACAGACTGAGGACCAGCACCCAGGCTC------CAACTGCTGTTCCGGCTGCCATCCTGCTTCCTTCCAGGGTCCTGGCTCTGTCTGCCCCTCTCCCTGCTGTGGCCTCCGCCCTAGGTGGGGCCTGCACCCTCTCTCCAGCCCCCATCTTTCAGTC-------GTCTTGTCACAGGGAATGCTAGGAATTCATGCCTTTGGGACAAGAGTCCTTCAGGTACTA-GAGAAATAATTATCACCCCACCCCTGGGTACTACCAGCCTCTGGGTACAGTCACTTCCCTGGGGGATGGGGAGTGTACCCTCTAGGGTCTCAT-TCCCTCAGAGCCCCCGATCCTATTTATTCCATCAGTCCA-TCAGGGC-TGCCTGGTGACCCACTGGAGCCCCATCTTGATTGCGCAAAGTTGC--ATCAATAGGGTTCAGGCCAGACTGTTGTCTGCAAGGGTGCATTTGGG----------------CCTGCATCATGAAGGCAAGGCTGGGGA---------ACAGGAGAGAAACCTGTTTGGAACTTCGTGAAAGAAAATCATTTTTTTTCTGGGGTTTCTCATGTTTTTTGAAAAAAATTCTCAACTAAACCCAGGGAAAAAAGAAATTTCTTTATTTAAAACTGCATTTTGTTTT---TTTTCTGTGAAACTACACAAGTTTACAAGTGAGGAGAGAACTGCCCCCGGCCCATGCCTCCCACCCCCCCACCCATCACACTTCCAACCTG----TCCCCAGTCCTGCCCGGATCTTTAATGGGAGGGGTTCCCCACTCTGACAGTCTTGTAAAATCCTGAGAATGTCTGAGGGGATCAGATGGTAGCTAGTTCAGGGCTGAGGATGGGACAGTGTTGATGTTACTTTTCCCCCACATCTGGCTTTTTGCAA----CCTCCTCCCTCTCCCTACCC-CTTGATTTTGGTGTGACAAAAA---GATACCTCATTTATGGGGAAATTGAGGAAGATACATATACAAGCACCCCAACCCATATTTAACATATTTGGCAATAACTCCCTTCCCATTCTTCCCCCTCCAATTTTCAAATAGTAGTTTTTTAAAAAA-----TTAAAGACATGTCACTCACAGGGGAAGATGGCATCTTCAATTTCCTCAAAATTACTGAGTCCAGCCCTGCCCAAGGGT------------TGTGGGAAGAAGGGGGATGAGAGGCCAGCAGGGCAAGCCCTTCACTGCCTCCACATCAAATGCGGCAGAAACCTGCCTGCATGAACAAAGAACACCTAAGGGATTTTAGGGGGCA--------AAGCTTGGTGCCCTGTAAAATT-----TACTTCCTGATGGACAGGCCTGGAGCCAGGGGGGCCTCTTTACCAGTTCTGTTTGTCCCCCTTTCTCTTACCAGAACCCCTTTGGCTATCACCCCTAATATGGGAAAGTAAGAAATAAAAAAAAAAGACAAGAAATCAACATATTTATAAAAAAAAAAACAAGCTACTTCCCCAAACTAAATTAAAAATTAAGAaccaccaccaccaccaccaccaccaacaacaaaaacaacaacaacaacaaaaaaaacaGATGGATCCCAGGGTTTCTTTTTCTTTCTT---------------------TAAAAAAAAAAAAAGTTCAACCCCAAAGCCCAGTCAATAATTCCCTAAAGTAGCAGAAACTCCCTCCGAGGTAGATATCTGAGTCAGACACTCTCGTCCACCGAGCGATTCTATTGGTTTAAGATGAGCTGCGTATGAGGTAAGTAAGCCGTCCGGAGGGGC-GGGGGTGGGGATGCATGGGG-GCGTGGCCCATGTCCTCTGTCCAGAAGTCATGTCCCCATTTTTGGCATCTCTGATTGGGCAGGGCTGGCGTCTCCACAGATTCCAGAGCATACAAGTGGGGTGGGGAAGGGAAAGTGGGGGAGCCCAG-GAGAGAAACAGAATAGTTGCAAGTGGGAGTATGTGTGTGTGAGGTGTGGGAGAGGGAGAGAGAAAGACAGAGGAGAAAAAGGGGTCTGAGAAATAGGTTTCTCGGTATGTGTATGTTTCTGTGTAAGAAAGAAAGCGAGAGAGGAAAAAGATGGAAAAAAGGGAGAGACAGACCCCACACTCCCCTTAGAGG-CCCCATTCTTCCTGCCATGTAATTAGCACCCCCAGCACAGAG--AGTCTCGTTAGGGAGGGGATGACCCCATTGGCCCTTCTCTGTCTTGTGCTTCTCCTGTAT-TGGGGTTTGTCCTCTGGAAGCCTGCGTCCTCTTCA--AGTCGCCTTGTGAGAGCCCCCACCCCTGTGACCCTGAGGGGCAAGATCAGTTGGAGGTATCAGAGTGAACACTCCCTGGTCCCTCCGTTGGGGATGTCACTGAAGAGGGGGTCACAGCCTCTTGCCAGCTGCCATTTGCCTGAAAGGAGAGACAGAGTACAGAAAACAGAGAAAGCCCTGGGA-ACCCTGTGTGGGC-ACAACATTACTAGGGAAAATGCCCCTCTGTCC-TGTGAGAACTGGACAGAGAGGAGCTTCAGG-ATCCACTCACCCTCATTTCCCGTGGGCTGTACATCTGGCCTCCCCCGAGGTTATCCCCATAGCCCCCTGGCCCCATCGAGTGTCGGAGTGATTCCACCTGCAGGCAGCAGAGGAAGGTATGACAGTGAAGAGAAGCCTCAGAGGAAAGAGGTCTTGTATCCTAAAGTAGAGGAAATGGAGTTGGGGAAAGCCCTATTCGAGAGGAGATGGG-CATCTGACCTGGGAAGCAGAATAGGAATCTCCGTTGAGCCCAGGCATCCCCAGAAACATGTCTCCAGATCCTGAGAGATTGAAAGAGCCGCCAGAGCCTTGTGGGGGCAGAG--------AGGGAAGAGTGTAATAGAGCCCGTGATGGTAGA-GGATGAACCAC-------------------AACTCTC--AACT-CTTGTGGGGACATGCTACTATACTCCAATTATCCACAAAATAACATTCCAACACACAGAAAGAGCAGGCTGTTCCTTGGCCACCCGTGGGAA----------------GAAAGGCAGAACTAAGATCACTGGAATGGCCTCTGTCCCCTGACATCTCCAGCCTATCTCAGCTCGGTCCCTCTCACCCCAAAAGGCCCCCTCTCTGCTATGATCCTGCCTAGATAGGAAGTGGGAACAAAAGCAGGAAGTGTGCAAAACAGTCAGCCGGGGTGACAGTGGGATCCACCTGCAGAGGAAGGGGGTGTCGGGGAGCTGGTGCGGCTGTGGCCCCCCTGGGTGACTGACACGGCGGTCTTGACAGCATAGATGTTTGCCTCCTCTTGGAACTTTCCGATGTTTTTCTTATAGCGAATCCTCTTGTTGCCAAACCAGTTGGAGACCTGTGGG-------GCAGAAAGGAGGGTCAGGTAGAAACATTTGCCTCTG-AAGTCCTTCACT--GAATAAGA s canFam2.chr12 4577687 5337 + 75515492 TCTTTCAGTTTCAGAAGAGAGAGGAAACAGACTC-GTTGCTCTCTTGGGAGGTTTTGCTTGGGGCAGAGGAG--------GTATGTGTACTGAGGAAG-GGTGGTAAGGTTCT-----------CCAGGGTGGGCCAGGGAACTGGAGTCTGCGTTGTCCTTTAGCCCAGCCTCAGGGGCCCTGGGACTTGGAGAGAGATCTCCTCACCAATGACGACACTGACACCACGGCTTTCCTGGGACCCGTGGCTGGGATGCATGGCCACACAGCTGTAGGTTCCCTGGTCCTCAGGCTTCACCTCAGAGAGGACCAGCATGGGGCTAGGGGGAAGGGGCAGGGGCATGCCCTGGGGGGAGAAAGGGGACAGGAGGCTATTTATTACAACATCTCTCCCCACATCTGTACTTCTGTCTTAGTCTTCATATCCTCACATACTCTGCCATCTTTCCTAGCTCCTGCC-------TCCCCCATGAGCCTCCTGTCCTCCTAATTGCCAGTAATGTGTCTGTCTACTTCCCAGCCTCCCAGCCCCCTCTCCAAGTCACTCACGTCCTTGATCCAGTGGATTTGAACAGAGGATTGGGCAGGAGTTTCACAGGTCAGGGTCACAGTACCACCAGGAGCTAGCATTCCAC---CTGGCTCTACCATCACTTGGA---CTTCCAGAGGCACAGACTCT-GGAGTTG---AGGGCATGAAGTTGAGAGTTATGCCTGTG-TTGGTCCCAGTGGTCATGGGCTTACTCTTCCCTCCTCCCTGAGGG--------------------------------------------CCTCCACTCACCCCAGACGTTGAGCTGGATGGGGGCCGCATGTAGGGCTCGACGCCGGGGAAGGCCAGGGCTGAAGCTACAGGAGAAGGTGGGGTGGGGAGCTCCTCCCTGGGCTGGGGTCACCATCAGCTCCGACTGGAGTGTGAAAAGCCCTGTCTCAGGGTGTCTCCTGGTCTCCTCCTGCACAGAGACTCCTATTGCGGGGAGGGGAGGACAAGGCAAGATATTCCAGGGTGGGTGTGGGAGAGGGGTCAGAGAGAAAGCAGCCAGGAGGGGGAACTTTGGGACTTACCTTTGCCATCAGGTATGAGGGGTTTCCCGTCCCAGTGCCAGCTAAGAGTCCCTGCAGGATAGCCCCCCTCAGACACACATGTCCCCACCTAGGGAAAGA---GTGACCTTCATCGTCTTTGAAAATAAGAGATTCCGCA----CACATACATGCACACCCCCCTCCAGCCTTATA---CCCCCTTCCACTTCTGAGGATGGCTTCCCTTTTCTTTACCTTACTGGGGACACCAGCCATGAGTTCAGAGGCAGGATTGATGATTTCTGGCTTTCCAGGAATCTCTGAAGTAGAGAAAATTTCAGTCAGAGGCTGTAGCTTTACAGACTCTTCCACCCTGGGTGTA-----CAGGTTCTCACACACCAGGG---CCAAGAGTCCAGGGCTAGGGTTGAAGGCTTTTCCTGAGAAGAGAGGTAGGCCATGGAGATGGCCCTGGAACTCTTACGGTAGACTCGGACTTGGTAGGTGGACCTCGTCTCCTTTCCATTTCTGCTCGTTGCCCGGCACCGGAAAGTCCCCTCATCCTGGATCCCTACTGCTGGCAGGAGGAGGGAGCCATTGGGGAGCACACGCGCTACACTATCCCAGGGA---CCTCCCTGGGGAGATAGGACCTTCCAAGCTTCTGTCCGACCTGTGTTCTGGGGACAGAGA---AGAGCCTGAACAGTGCAAGTCCTCTGGGAAAGGACTTGTGAGACAGAGAGGTGGGGCCACCAACCATCACTGG--GCCCTGGCTGTGGGGAGCGGGAGCTGTGGCAGGAGCCCTGCTTACCAGCTTCCATTCCAGCTGCTGCGGTGGCTTCTTGGGGGCCCCCCTACAGTTGAGCACCAGCGGCTTCCCGATCCGGGCTGTGATGTTTCGGTCACCTACTACTGCTCCTGGGAGATGGGACAATGGTGGAGGAGTAGGAGGGGATTGGGGGGCCAACAAAA---------GATGGGTGAGGGAGCTTGGAAAGTA-GCGCTTGGGTTCCAGG-AGAGTTCTGGGCAGATTTGGGGAGGAGGATGAAGTGCTTTCTGCAGGGAGGATTGGTG----TGAGGGTTGTGGCTCACCCCACAGACTGAGGACCAGCACCCAGGCTCCTGCCGCCGCTGCCGCCCCTGCTGCCATC--GTTCCTTCCCAGGCTTCTGGCTCTGTCTGCCCCTTG--CTGCTGTGGCCACCGTCCTAGGTGGGGCTTGCACCCTCTCCCCTACCCCCATCTTTCCATCCTGTCCTATCCGGCCACGGGGAATGCTAGGAATTCATGCTTCTTAGACAAGAGTCCTTCAGGTACTAGGAGAAACAATGATCACCCCACCCTTAGGCAGTGCCAG--TCTGGGCACAGCCATGTCCGTGGGGG-TTGGGAGTGGACCTCCTAAGGTTTCTTAGTATTCAGGACCCCTAACCC-----ATTCCATCAGTCCACTGAGGGCTTGCCTGGTGGACGATGGGAGCCCCATGTTGCTTAGGTAAGGTTGCTGGGCAACAGGGTTCAGGCCTGGC--CTGGCCTTGGGGGAGGGTTGAGGGTGAACCATGGGTGCTCCTGGGTGGTGAGGGTAAGGTTGGGAGTGGGTAGCTGGAAGGGAAAACACCGTTTGGGGTTTTATGAAAGAA------TTTTATTCTGGGGTTTATCATG-TTTTTGAAAATAATGCTCAACTAAACCCAGGGAAAAAAGAAATTTCTTTATTTAAAACTGCATTTTTTTTTTCCTTTTCTGTGAAACT--ACAAGTTTACAAGTGAGGAGAGAACTGCCCCCGGCCCGTGCCTCCCA-CCCTCCACCCATCACCCATCTAACCTGCTCCCCTCCAGTCCTGCCTGGGTCTTTGACAGGAGAGGTTCCCCACTATGACAGTCTTATAAAATCCTGAGGATGTTTGAGGGACTCAGATGGTAG--GGTTC-TGGCCAAGGATGGGACACTGGTGATTTGAC-TTTCCCCCACACCTGGCTTTTTATGACATGCCTCCTCTCTCCCCCCACCCTCTTGATTTTAGACTGAGAAAAAAAGAATGCCTCGTTTCTGGGGAAATTGAGGGAGATACATACACAAGCACCCCAACCCACATTTAACATATTTGGCAATAACCCCCTCCCTGTTCTTCCCTCTCCAATCTGCAAATAG------GTTAAAAAGAAGACTTAAAGATGTGTCACTCACAGGGGAAGGTGGC-------GCTTCCTCAAAATTACTGAATCCAGCCCTGCCCAAGGGTTGTGTGTTTGTGTGTGTGTGGCGGGGGGCGGGGGGGACAGGTCAACAAACCACTGGCTACCTCCATACCAAGAGCAGCAAAGAGCTGCCTGCATAAGCAAAGAACACCTAAGTGATTTGGGGGGGGGCGGGGGGCAGGCTTGGTGCCCTGCTAAGCTAAACATACTTTCTGATGGACAGGACTGGAACCAGGTGGGCCTTTTCACAAGTTCTGTTTGTTCCCCTTTCTCTTAC---GACCCCTTTGGCTATCACCCCTAACATGGAAAAGCaaaaaattaaaaaaa--------aaatcaatatatttataaaaa-------CATCTACTTCCCCAAAC-----TAAAAATTAAGA------------------GCCAATTACAGCaataaaaaaaaaaaaattaaaaaGCACAGATGGATTCCAGGGTTTCGTTTCTTTACTTAACaaaaaaaaaaaaaaagaaaaaagaaaaaaaaaaaTCAAGCCCTAAGCCCAGTCAACAACTCCCTAAAGTAGCAGAAACTCCCTCCGAGGTAGATATCTGAGTCAGACACTCTCGTCCACCGAACGATTCTATTGGTTTAAGATGAGCTGCGTATGAGGTAATAAAGCCATCTGGAGGGGCAGGGGGTAGGGAGGAACAGGGCTCATGGCCCGTGTCCTCTGTCCAGAAGTCATGTCCCCAGTTTTGGCA--TCTGGTCAGGCAGGGCTGGCTTCTCCACAGATCCCAGAGCAGGTAAGTGGGGTGGGGGAG-------GGGGGAGCCCAGAGAAAGAAATGGAATA-----------CAATATG------------GTGGG-------TAGAGCAAG--------GGGAAGGTGATCTGAACAATAGGACTCTGGGC-TGCG---GGGTTTATGTGAGA---------------GAAAAAGACTGAAAAAAGGGA-AGACAGACCCCACTCTCCCCTTAGGGGACCCCATTCTCCCTGCCACGTAGTTAGCACCCCCAGCACTGAGACAGTCTGGTTGGGGACAGGATGACCCCATTCGCCCTTCTCTGTCTTGTGCTTCTCCTGTGTCTGGGGTTTGTCCTCTGGATGCCTGCGTCCTCTTCAAGAGTCGCCTTGT--GAGCCCCCACCCCTCTGGCCCTGAGGGGCAAGATCAGTTGGAAGTGTCAGAGTGAACGCTCCCTGGTCCCTCTGTCGGAGATGTCACTGAGGACGGGGTTACAGCCTCCTGCCAGCCACCGTTGGCCTAAAAAAAGAGAGAGTTGGTTG-----GGGCAGGGCTCTGGGAGATTCAGTGTGGGAGACAAGGCCACCAGGGGAAAGGCCCTCCTGTCTGGGTGAGAGGTAGACAGAG-GGAGCATCGGGTATCCACTCACTCTCATTTCCCGAGGGCTGTACATCTGGCCTCCCGCAAGGTTATCCCCGTAGCCCCCTGGCCCCATTGAGTGTCGCAGTGATTCCACCTGCAGGCAGCAAAGAAGGGTATGACACT-----------------GTGAGGCGTCTTATATTCTGAAGAGCAGGCAA--GAGTTTGGGAAAGCCCCAATGGAGGGGACATGGGCCACCTGACCTGGGAAGCAGAGTAGGAATCTCCGTTGAGCCCCGGCATCCCCAGAAACATGTCTCCGGATCCTGAGAGATTGAAAGAGCCGCCAGAGCCTTGGGAGAACAGAGAGGGAATTAGGGAAGAGTGTAAC--AACCTGTGACAGCAGACAGAAGGCTCACTACAGTGCTGTTTCCAAGAAGCCCTCAGAACTATTTCTAAGGGGGTGCCACTATATGCAATTTATTCCTAA---GGCACTACAACA---AGGAGGAGCAGGCTGTTTCTGAGCCTCTCCTGTGGCTCCCCGGCCACTTGCTGGAGGACAGAAGTAGCTTCGCTGGGATGGCCTTTACCTCCTGACATCTCCACCCCACCTCAGCTAGGTCCCTCTCACCCCAAAAGGCCCCTACTCTGCTGAGATCCTGCCTAGATAGGAAGTGGGAACAAAGGCAGGAAGCGTGCAAGA----TAGCCAGGATGACAGTGGGGTCCACCTGCAGAGGAAGGGGGTGTCGGGGAGCTGGTGCGGCTGTGACCCCCCTGGGTGACTGACACGGCGGTCTTGACGGCATAGATGTTTGCCTCCTCTTGGAACTTTCCAATATTTTTCTTATAGCGAATCCGTTTGTTGCCAAACCAGTTGGAGACCTGTTGGGTGTTGAGCATAAAGGAGGGTCAGGTGCAGACCTTTCCCCCCACCAGCCTCTCAGTTAGAATCAGA a score=130766 s hg19.chr6_ssto_hap7 3503107 2316 + 4928567 GTGCACTTTGCCTGA---CAACTCCTCCCGCAA-CCTCCATAATACCTGAGACACGGTGATGCCACACTTCTTGGCAAGCTCCTCCTTGGCCTCCTCACTAGGATATGGGTTACTCAGGTGGGAGTAGAAATACTCATTTAGGACCTCAGTGGCCTGTTTGCTGAAGTTACGGCGCTTTCGTCTACAGAGGAGGGAGAAGAGCAGTGAGGAGGATGTTGATGTCCTGGCAGGGCTGTCACATGGCATGACCCCAGA-GTCACCATTGTCATGGAGTACCATGTTGTGCAGCATGGCAGCTCAGGGTCTTGGAGAGGAATGGGAAGGAGCCCAGTGCTGGGGGCCAGCCTGGGGTCCCTGGGCCCACCTGGCATCCAGGAAACGGGAGCGCAGGATCATCACAGCCTCGCAGGTGCTCTGCTTCAGCTGCATCTGGATGGCGCTGAACTTTCGATGGATGATGCTCACCATGCGTTCCATCTCTTTGGGGGCCACGGGCCTGGTGCGGCTCTGCTCCCTCAGCAGGTTCATGACATGGGTCGTGAACTCATTACATGCCTGTAGT-GGGGGCCAGTGGGCTGGTGAGGAGGAGCCCTTTGACCATGGGATTCCCCTGCAAGAGCCCTTCCCTCCACCCACCCAAGCCTCCTCTCCTTACCTGCTCATACTTCTCCAGCTCCGAGTGGTATATGTGACGGATCTGGGCAAGTTTGCTGCGATAGTCCGAGTGTTCGATGGAGTTGTCAGGGGACACACCACCACCAGAGGCTGCAGCGGCTGCAGCTGCTGCTGCTGAGCCGCCCCCTTTCTCGGGCCCAGCCACACCCTCTGCCAGAAGCATGTTGTCCAAGCGCATCAGCTGTGGGTCCACCGGCTCCTCCTCCTGGGAGCTCCGAATGCTGAGGCCTAGCATGCAGGCGAGTGGACTTAGGGACCCAGAGACCCCAATACCCAGTGCTCAGTCCTCCTGGTGCTTCCTGGAGAGCCAAGTTCCCAGGCTTTGGTTCCTTCCCCAGTCCC-------------CCTGACTCCTTACTTTCCTCAGGGCCCCAAGTTGTCACACTCTAG-------CCCTATAATGAACAGGGTTCTGTTCCCAGAGTTGAGCAATCCGGGGGGGGCCCACATACCAGTTTTCTCCTTGATTTCACACAGGACGCTAAAGAGAGCAGGCTTCATTCGGTGGCAGTTTAGGGCGTGTTTCCTTGGGAGGAGTGGGAGTGGGGAAAGAGAAAAGTTGAGGAGCTAGAGAAACAGAGCAGG---GGGCCTGAGAA------CAAGGAGGGAGGAGGGTCAGTCTG---------CGGAGGGAGGAAGC-GGATTGGGGGTGGAAT-GAGTTGGGGGTGGAATGAGGAGTTCTTGGGAAAAGATCAGCTCCCAGAGCATGG------GGAAGCTCCTCAGCTTCAGGGAGACACAGGGAAGATGCAGGCAGCAGGTTAAAGGCTGC-------------GGGCTTTGGGAGAT-GGTCTAGAAAGGTAGGAGGAGGAATCTGGGAGTGGATGGAGAAAGGAAAGTGACTTGGTAGGTTTCAGAGGGAGAGAGACAGAGGCTGGGGTTGAGAAGAGTCAGAGTTTGAGGTGGCAGAGTGGGGCTGGGGGTGCCGAGCTAACTGGGGAGATCAGTGTAGG-GTGTGTGAAGGGGTCCTGGGGCTGAGCAGG-TGGGAGGCTTTGATGCACCTAGTGTCTGGCTGAGCA------------------------------------------GTGGAGAGGAGCTTTAGGGGCTCTGGAGAGGGTGTGGAGGTCTCCACATCTGGAGAGAATGAGG-------GGGCTGGGTGGAGAGTTAGGGGAGAAGATAACGTAGCCCAAGAACAGTTTCTTAGTCTGGGAGCCAGAGGGGGCTCCCGGGGATGG---GGCTGTTCCAGGAGACTGCAGGGGTCGGCAAAAGGTTAGGAGTGGGG----AGCCGGGCCACCGGGGGTTCCC-TCTGTGAAGGTTTCAGGGCCTGGGGGTGAAGGGAGGTTTGAGAGGGATCACTTTTCTATGGGCTCCCAGGAATAAGGAGAGAAGAGAGCTGTTGGATCCTGGAGAGGGCCCTGGAGTTGGG---------GGGGGCTCCCAGAAGATTCAGAACATGTGAACGGGG--TTTGCTGGGTCTGTGTGGGGTCCCGGAGTGGGGGCACTCACTTGGCCTGGGCCTCGTCCAGGCTCTGGTCGGTGATGGTCATTATCTGCTGCAGAATGTCCCCGATGTCTTGCTTCCCTCGGCCTCCCGGGACCCCCCCGCTACCCCCACCGGGGTCTCCGCCACCGGGAGGCTCGCCAGGGCCCCCAGGCTCCCCACTCACCAATCCCAggcccccccggcccccgcctggagggggcggccccAGTAGCCGTTCGTCCATAGCTG s canFam2.chr12 4583024 2329 + 75515492 GAGCTTTTGACCTGAACCCCACTGCTCCTGCAAGCCTCCCCAGTACCTGAGAGACAGTGATTCCGCACTTCTTGGCAAGCTCCTCCTTAGCCTCCTCACTAGGATATGGGTTACTCAGGTGGGAGTAGAAATACTCATTGAGGACCTCAGTGGCCTGTTTGCTGAAGTTGCGGCGTTTTCGTCTACAGAGGAGGGAGCATGGTGGTGAGAAGGCCA--GCTGTCCTGGCAGGGCCTCCATCTCGCATCATTCTAGAGGGGGCCATTGCCATGGAGCGCCATGTTGTGTCACATGGTGGCCCAGGGGCTTGG------------GGGAACCCTGGGTCAGGGGCTCGCCTGGGCACCCGAGCCCCACCTGGCATCCAAGAAGCGGGAACGCAGGATCATGACAGCCTCACAGGTGCTCTGCTTGAGCTGCATCTGGATGGCACTGAACTTGCGATGGATGATGCTCACCATGCGCTCCATCTCCTTGGGTGCCACAGGCCGTGTGCGACTCTGCTCCCTCAGCAGGTTCATGACGTGGGTCGTGAACTCGTTACAGGCCTGCAGCAGGGGGCCCGTGGGCT-GTGAGGAG-----------CCTTGGGATTCCCCATTAGGAGCCTCTCCTCTCACCCACTCCAGCCTCATCTCCTAACCTGCTCATACTTCTCCAGCTCTGAGTGGTAGATGTGGCGGATCTGGGCAAGTTTGCTGCGGTAGTCGGAGTGCTCAATGGAGTTGTCAGGGGACACGCCGCCCCCGGAGGCTGCAGCAGCTGCAGCAGCTGCGGCTGAGCCCCCCCCTTTCTCCGGTCCAGCCACACCCTCTGCCAGAAGCATGTTGTCCAGGCGCATGAGCTGTGGGTCCACCGGCTCCTCCTCTTGGGAGCTTCGGATGCTGAGGCCTAGCAGGCAGGTGAGTGAACTCAGGGACCAGGGAGCCC--ATGGCCAGCTCTCAGCCCACCTGGTGGCTCCTGGAGACCCATGTTCCCAGGCTCTGGTTCCCTTCCCAGTTCCTCCTAGCATCTTACCTAAC-CCCTACTGTCCTCAGGGCCCCAAGATGTCAAACTCTTGGCCTGACTCCTATAAAGAACAGGGTTCAGTCCCCAGAGGTGAGGAGTCAGAGGGGGACCCACGTACCGGTTTTCTCCTTGATTTCACACAGAACACTAAAGAGAGCAGGCTTCATGCGGTGGCAGTTGAGGGCGTGTTTCCTTGGGAGGAAGGG-----------GAGAACAGTTGAGGGTCAATAGAAACAGAGATGGGGTGGGGTTGGGGAGACCATGAAGGTGAGAAAGAGGGCAGCCCGGAACGAGAAGGGAGGTAGAAAGTGGGGGTGGGGGCAGGATGGAGTTGGGGGC-----------TTCTTGGAAAGAGGTCAGCTCCTGGAATGTGGAGATGTGGGGGCTGTTTGGCTTTA-----------GGAAGGTGCAGGCAGCAAGATAAAGGCCCCATGGGCTTGAACGGGGCCCTGGGAAATGGGTCTAGAA---------GGGGAGTCTGGGGGTGACTGCCGACATGAGGGTGACTAGGTAGATTTCAGAGGAAAAGAGACAGAGACTGG----GAGAAGAGTCGGAGTTTGAGGTGCCAGAGAGGGGCTG-----------------GAGAAGTTCAACATAGGTGTGAGCGGA-GGGTCCTGGGACTGAGGAAGCCAGGAGGCTCTGATGATCCCA--GTCTGGCTGAGCAGGGGCCACGGGCTGGGTGGGGACACATGGATGCTGGGTCATGGTGGAGAGGAGTGGTAGGAGCTTTGGGGAGG--GCTGAGG--------TCTGGAGAGGATGGGGTGGGGGTGGGCTGGATGGAGAGTTAG----GAAGACAGCATAG--------CAATTTCTTAATCAGAGAGCCAGAACAGGGCTCTGGAGATGGAAAAGATGTTCCAGGGGAGTATGGGGGTCAGTGAGGGGTTGGGGATGGGGTTGCGGTGAGACCACCCTGGGTTCCCTTCTTTGAAGGCTTCAGGGCCTGGTGGTGAAGGGGGGTTTGAGAGGGATGGCTCATCTTGGGGCTCCCAGGAGTAAGGAGAGAAGA-AGCTGTAGGATCCTGGAGGGGGTCCTGGAGTGGGGGGTGGGGGTGGGGACTCCCAGAAGATT-----CTTGTGAATGGGGCTTCTGTTGGGTCTGTGTAGGGTCCCGGGGTGGGGGCACTCACTTGGCCTGGGCCTCGTCCAGGCTCTGGTCGGTGATGGTCATTATCTGCTGCAGAATGTCCCCGATGTCTTGCTTCCCTCGGCCTCCCGGGACCCCCCCGCTACCCCCACCGGGGTCTCCGCCGCCGGGAGGCTCGCCAGGGCCCCCGGGCTCCCCACCCACCAATCCCAGGCCCCCGCGGCCCCCGACCTGAAGGAGTTGCCCCAACATCCATTCAACTCTAATTG a score=156298 s hg19.chr6_ssto_hap7 3505920 2781 + 4928567 CCGCGGCCTAGGAGTGGGGCTGTGTTGGCGGCTGGGGGCGTCTGTCACCTGGGTCCTGAATCAGGGATCTAAGCGATGTGGACTCAGGCCGCTGGAATGCCTGGGTTCACCGGCAGCTCAGTTCATATTTCTTGTTCTAATGACTCCCCTCCCTGTTCTACTTAATTAAAACC-GAAGAGGGGGGCTGGGGGAG-ATAATTAGGGAGGTCTCCAGCCGCTGCTTAATGAGCCAGTAATTAACCAGCCGGGGAGGGGAGCTGGCCTCTGGCCAGACTGGGGAGAGAAAAGGCCTCTGGCCTCACCTTCCTACCTTTC----ACCCCGCCTGGGCC-CCCCAGATACCAGTCTGC----AGTCCAGAGGGGAATTATATTTATTCACACAACCAAAACATCAGACAGACTCAGCAGCAGTGGGGAGGGAGGGTGGGCAGGGCTGAAGGTCCATTCACAGCCCGTAAACCCCTCAGTCTCAGGGATCGGGGGTGCTGGTAGTGGGACTGGGAGAATAGTCTTAATCTCTCA-GGTGCCCACCCACCTTCCCTTCTTACTGGGAGGAAGGGTAGAGCTGTCTCTCAGGTTATAACCTC---------------TC-----AGGTGGAGGCCTGAGCCCTCAGACCCTACTGCCTAGTAGCTTGACAACTGGTGGTGTCCCCACAAGTTAGGGAAAAGACTCCCAGCCACTCCTTGAGAT---------GGGTGCC----------TGGGATCCCCCTTACTGCCTCAAGCTCCCATGGACCTGTGGGCGGGGAGTTAAATCCCTGTTCCATCTCGCCTGTTCCCAGAGTTTGAGGACTTTCACCCTGTCCAGTTCCCAGGGAAGGTGATGTGGGAGATGAATATTGAGATTTGTGCCGTGTCTTTCAGTCTCTGGTACCCCTGCCAAGCAAGAGTTGAGGGCATGCAATGGGCTGCCCAGCTTTGAGACC-AGTGGCAAGGAAGGGCTGGTTGGGG-------CTCAAGTCTCAGCAGGTGTGTGTGGGGGGCCGGGACCTTTGCTCCTCCATTCGACCCCCACCCTGAACTCTCAGCAGCAACTCCAGGAGCTCTTGCCCCCCTGGAGGGAGGGGAGGCTCTGACCGCTGGGCTTCCATCCGCTGGCACTGGAGGAGTGGAGGGAGAGGGAGAGCTTTGGTGAGGGTCTGAGAGGAGGAGGTTCTTGAGAGGATCAAGGGTTGGTATGGGGAGGCATATAGGAAACCTGTGAAGGCGATGGGGTG-------CCTAG----------------GGAGAAAC-AGGAGTAGAGCCCCAAAGAGAACAGGGGCCAAGAGACCAGGAGGCCTGGGT-TTGCCTCCTGGGGGGATGTCTTACCTGGTGACTGAGGATAGTGCTGTAAAGCTGTTCTCTGTCCTCGAGAGGACGGAGTGGGGCAGGGGCTAGGCTTGAGGGGTTTTGGGGGGTGTAGAAGGTGGCCCTCTGCTCCTCCAGGCGGCGGGACTGGGCTTCAGCCACCAGGTCCAGAAGGAGTTCAGTCTGCAGGGAGAGCAGGGAGGCCGAGCGGGGTCCCAGGGCTGGGGAGAGGGGTGTGGAGGGCTCAGAGACCCAGAGAGGTTGGCAGACAGGAGCCGTGGGGGAGTGTGGACAGGGTGACGTGATTAGGGACTTTGGATCAGAGGAGAGGGGGTGCAATGGGGAATCCCAAGGGGAGTCTGGAGGAGGTGGGGAGAGGGCCCACAATGGAGTGGGCCTTGGTAATGGGGTC----AGGATGTGGGCACTAGGGTCGGGGCTCTCCCTGGGTGGGTAGGGGTACCTGTGTGGCGGGTCCCTGGAGGAGGAGGGGATGGAGGAGCAGATCGCCAAGGCCGAGTGGTGGAGTTTGGAGGGGGCCAGCCTTCCTCATCCTGAGGGGGGCCCTGATGCCAAAATATGTCCATTCTAGTCAAGCAGTGGTGGTTGAAGCGGGAGGAGTGGACAGGGGGCTAGGCCAGTGGCCCGTTTCCTCTCTGTGTGTCTCTGTTCCTGCCTCAGTTTGCCCAAG-CCTTTCAAGGCCCCTGTGTCCC-------TACATTTCTGCCCCAGGTCCTCTCACCTCCCTTCTTTCCCAGTGTCAGCCTCCCCAACCCCGTGCCCAGCTCACCTGCTCACCATCCTCTTCTTCCTGGGGTCTCTCAGCCTCCATCCCCTAGAGGG-GAGAAACTGGTGGGGGAGGGGTGGCTGGGATTTGGGAGGAGGGCTGGAACCTTGGGTTCCTGAGGGGAGTGGGGGCTGGAAGGGGTGGGGGTGAGCTGGGGGCTGGATGCCTGGGTACTGAGCAGGAAGCTGGGTTCCTGGTCAGCCCCCCCACGGGCCCCGCCCATCCCTGTCAACTTCCTCCA---TTCTCTTCCCACCCAAACAGCTTGTTCAGTCTCTCTCGCCCCAGGGCAGCACTGAGACTGGGAAAAACTCCTCCAGCTGCAGGAGTGGAGGGGGCTCATGGTGGGGAAGGACTCCTGGCGGTCTCATCTCCAGAGCCTCAGTAG--TCCCCTAATCCCTGGCTCTGCTCCCTCCA--CCCCACCTCCTCTTCTGCTCTTTCTGTCAACACAGGAACTAGCTACACAGGAAGTGGTTTCACTCCTCAGAATCCCCCTCCCCCCAGCCAGGTCCCTTCCCTCCCTAAGATAGACCCTGGTGTAGGATTTGGCCCT--------CCCGATCTTCCCTCTTACTTACCGGGACTGGGAGGGGCATGGTTCCAGTGGGAAGTGGAGGATTCAGATCCAGGGATGTGGAGCTCTCAAATATATACATAAAACcctagcaccgggtccaacacatagtaagtattcaatatatatg----tattgaataaTCATCCCTGACCTCTAGGTATT s canFam2.chr12 4585780 2796 + 75515492 CCGGGACACGAgggcggcgcgg-gtcgg-ggctggggg--gccgccgccggggcTCCGAGTCGGGGTTCCAGGTGCCGTGGACTCCGGCCGCTAGAATGCCCGGGTTCGCAGACAGTTCCGTTCATATTTCTTGTCCTAATGACTCCCCTCCCTGTTATACTTAATTAAAACCAGGAAAGGGGGGCTGGGGGGGTATAATTAGGGAAGTCTCCAGCCGCTGCTTAATGAGCCAGTAATTAACCAGCCAGGGAGGGGAGCTGGCCTCTCGCCAGGCTAGGGAGAGAGGCGGCCTCTGGCCTCACCTTCCTGCCCCCCCCGTACCCCTCCCCCACAGCCCTCAACACCAGTCTTCTTTTAGTCCAGAGGATAATTACGTTTATTCGTACAACCAGAACATCAGAC---TCGAGCAGCAGTGGGGAGGCGGGGTGGGCAGTGCTAAGTGTCGGTTCACAGCCTGTAGGCCCCTCAGTCCTGGGGGCTGGGGGTGCTGGTGGTAGGG-TGGGAGGATGGTCTGTCTCTTTTGCAATGCCCTGTC----TCCCTTCTTAATG----------------TGTCTC-AAGGCCCTAACCTTGGGAGATTTGCCTTTTCTAGGGAGATGGAGGCCTGAGCCCTCAGA---TTCTGCCTTATGGGTGTCTGACTGG-GGTGTCTCCACAGCTCAGGACCAAGACTTCCAGCCACTTCTTGGGATCAGAGGAGGGGGTGTCCCTCAGTGGCTAGGATCCTC-TCACCTCTTCAAACTGCCGTGTACTGGCGAA--GGGAGTCAAATGACCATCCTACCTTGACTATTCCCAGGGTTTGTGGACTTTTACCCCCTCTATTCCCCAGAAAGGTGGATGAGGGTGATGAATATTGAGATTTCTCCCAGGTCCTTCAGTCTCTGGCGCCCCTGCCAAGCAGGAGAAGAGGGCATGCAATGGGCTGCCCAGCTTTGAGCCCCAGGAGTGCGGAGTGCCTGGTGGGGGGGAGGGGCTCAAGTCTCAGCAGGTATGTGTGGGGGGCCGAGACCTTTGCTCCTCCATTCGACCCCCACCCTGAACTCTCAGCAGCAACTCCAGGAGCTCCTGTCCCCCTGGGGGTAGGGGAGGCTCTGACCGCTGGGCTTCCATCCGCTGGCTCTGGAG---TAGAGGGA-AGGGAGGTTGTCGGTAATATTTTAAGAGGAATAGGCCCT-GAAAGGAGCCAAGGCTGATGAAAGGGGTC-TATAGGGCACCTGTGATGGGGATGGAGGGGATCAGGCCTGGCAAAGGGGTGGATGCTGGGGAAATGAGGAGTAGGGCCCAAAAGACAACAAGGGCCAACGAACTGGCAAGCCTGGGTCTTGCCTTCTGGGGAGGCGTCTCACCTGGTGACTGAGGATAGTGCTGTAGAGCTGTTCTCTCTCCTCAAGAGGCCGAAGTGGGGCTGGGGCTATGCTTGGGGGGTTCTGGGGGATGTGGAAGGTGGCTCTTTGCTCCTCTAGGCGGCGGGACTGGGCCTCAGCCACCAAATCCAGAAGGAGCTCAGTCTGTAGGGAGAGCAGGGAGGCGGAGCAGGGCCCCAGGGCTGGGGAAAGGAA-GGGTAGGGCTCAGAGACCCAGAGAAATTGGCAGACAGGAGGGGTGGTGGTGCAAG-----------GTGATTAGGAACTTGTGGTCAGAGCTGAGGGGGAGTAGTGGGGAGTT---------------AGGAGATGGAGAGAGGGCCCACGATGGGAATGGCCTTGGTAATGGGATCAGGAAGGATGTGGGCACCAAGGTCAGGGAGCTCCCTGGCCGGGTGAGGGTACCTGTGTGGCGGGTCCCTGGAGGAGGAGGGGACGGAGGAGCAGATCGCCAAGGCCTAGTGGTGGCATTCACAGGGGGCCAGTCCTGCTCATCCTGATGGGGGCCTTGATGCTGGGAGACATCCGGTCCAGTCAGGC----------------GGGGGAGTGG---------TGGGCCAACAGCCCATTTCCTCTCTCTGTGTCTCTGTTCCTGCCTCAGTTTGCCCAAGCCCTTCCAAGTCCCCTGAATCCCCTGTCAGTACGTCTCTGCCCTATGTCGCATCACCTCCCTT-TCTCCCAGTGTTAGCCTCCCCGACCCAGTGCGCAGCTCACCTGTTCACCATCCTCTTCCTCCTGGGGTCTCTCGGCCTCCATCCCCTGGGGGGAGAGAAACTGATGGGGGAGGGATAGCTGGGATTTGGAAGGAGGGCTGGAACTCTAGGTTCCTGAGGGGAGTGGGGGCTGGAAGGGGTGGGGGTGAGCCAGGGGCTGGATGCCTGGGTACTGAGCAGGAAGCTGGGTTCCTGGTCAGCCCCCCCACTGGCCCCGCCCATCCCTTTCAACTTCCTCCAGTTCTCTTTTCCCACCCAAACTGCTTGCTTGACCGCTCTTGCCCCAGGGGAACACAGAGACTGGGAAAAGCTCCTCCAGATGCAGTAGTGGAGGAGGTTCATGGTGGGGAAGGACTCTTGGCCTCCTCGTCTCCAGAGGCTCAGTAGACCCCCCCAAGGCCAGGCTCTGTTCTCTCCACTCCCCTCCTCCCCTTCAGCTCTTTCTGTCAACACAGGAACTAGCTACACAGGAAGTGGTTTTGCTCTTCAGAGCCCCTCTCCCTTCC-TCAGGTCCCT----TTCCTAAGA-GGACCCCAATGTAGGCTTTGACCCTTCCCTGTATCCCAGTTTCCTGCAGACTTATGGGAACTGGGAGGGGCATGGTTGCATTGGGAAGCAGAGGACTCAGATCCAGGGATATTGGGCCATGAAACATGTACACATACCCCTAGCAGTGGTGCCAACCAACACACACTATTCCATAAATATGGAGTTATCAAATAGTTAtccctgccctctaggtgct a score=3894 s hg19.chr6_ssto_hap7 3509024 132 + 4928567 TACACTCTATTCAGGAGACAAGATGTGTACCAAATAGAGTACGGGAAGGGTTCATTTTGGAAACTTATAGTTTAGTGCAGACAAGGGGCAGGGGAAAGTTTATTTTGG----GCATAAGAGATATAGATATGGAAC s canFam2.chr12 4588576 96 + 75515492 tacagtctattcaggggacaagatatgtaccaaat---------------------------------------gtg-agccaaggggcagggGAAACTTTCCTCTGGCCATGAATAAAAGATGTAGGAATGGAAT a score=20521 s hg19.chr6_ssto_hap7 3509295 504 + 4928567 AGGGAGAGGACTACCTCTCTGGCTTGGTCTTTGATCAATGCTAATCAGGCTGGTTGGCATCAAGGAAGGAGCAGGGCAGACAACCATTTGGTACCTCTAAATGGCAACCTGTCATGTTAGGGAGTTTATAGCTGAGTGATTTGGAATGTGAAATGTGATGAAGAGATctggtcctgccgcttattccttgcaatcttgggcagatc-----tctgtgcctcaatttct--gagtgaaatagggttttaatagcacctactt---catagggttgatgt----attaataatgtaatgaagcacttgatgcatagtgaatacttaataaactgt-agatattattGGCTTTCAAAATGCCTCATGACTCCATGTTTCAAACCTAGCAACAT-----------------ATTGCTGCAAGGTGGACAAAGTTTCAAGATACTCTCTCCATCTACTTGACTTGTGGCCTTAGGAATCTCCTAAGTGGCCATAAGTAAAAGCCCTAGGATGAGGGACAAAGTGTGTGCATCATCTAGTGc s canFam2.chr12 4588672 498 + 75515492 AGGGAGACAACCACCTTTCTGGCTTGGTC-----TCACTGCTGGTCAGGCTGGCTGGCA-CAGGGTGGGAGCAGGATAGA-GATATTTTGGGACCTCTAAATGGCAACCAGCCATATTAT---GTTTGCAGCTGAGTGGCTTGGAGCATGAAATGTAATAAAGAGATctggttctaccacttaatgcttgcagtctctggcaaataaaatgtctgtgcctcagtttctcagagcaaaatggagcttttttagcatctaccttactatagagttgatgtgaggattaaatgtgtaa--aagtatttggcatatagggaatgctcaataaatgataagttactattAGCTTTCAAAATGCCTCATGCCTCCATGTCTCAGGCCTATCACCATTAAAGAGGAGTAACCAGGTTTCTGAAAGGTGGATAATGTTT-GAGATGCTCTCTGCATCTTCAT--CTTGAGGCCTGAGGA---------------ATAATTAAATGCCCTTGGAAGAGGAGGAAGgtgtgtgt--------gtgt a score=38213 s hg19.chr6_ssto_hap7 3510132 822 + 4928567 GTGTGTGCGGTTTCTCCCTTGGCTACTAGATTCTTGCTTTCAGATAATACCCTAAATTATCATAGGGCCCCTAAATATACTTATTCTTGCTTTT-AAACTATACTTACATCCTCCATCCAATCCAA--ATGCTGAGCCAAAAGCACAAAATGCTG---ACATTATGCAGTCACTCCCATCTTTTTTCCCATTCTTCTCCCCAATTCCTCCAAAAAAAGGTAACACTTCAAATCAGCTTTATTAT-GGGTGACAGATTTAGGGTTCTTAAATAGCGATAGCAGTGGCTAGAAGA--AGCGCTTCATCCCCACAGTGGAGTTCTTTGTT------GTGAGGGGAGGGAATGCAAGGAGTCATCAGCGGGGGTGGCCCTTGGCCACt--tttcagcacctacacagtgcctggcacatagtaggtgcccaataaatatttgtCAGCCATTTGTGGGCAGTGGGGACAATGGATCATAGGGGCACCCTTTGGAAACCATATATAGGAAAGAACATCTTACATCCCATATGCCTGCAATTCTTGGTTCCAACTTAGGGGTATTTCC---ACTCCACTCTGCCCTCCTGTGGCCTGT----CTTATTTTCTGGAGGAGGACTGGGCCTGCCTCATCCTAGCATCTTAAACCCTCTTTCCAGAGCTGCAGCTTCTCCACGTGGAAGATGTCTGCTCTGGTGGGCATACATTCATTTTAGGAGAGAAACTAAACTCACAACCCTTCATTTTGGGGGATCC---ATCTTAAAACCAGGAAGGCCTTCCAGCCTGCCTTTTAATGGGTAATCATTTTTGGAATTCCTCCCTACCATGTATTCTTCTATTTTTTACCCTC s canFam2.chr12 4589170 827 + 75515492 gtgtgtgtgGTTTCTCCCTGGGCTACCAGACTCTTGCTTTCAGATGATACCCCAAATTAACACAGTACCCTCAACTCTACTTATTCTTGCTCTTGAAACTGTACTTAAAACCTCCATCCAAAGGGATGACATTGATCTTAGGGCGCAAAATTCTGAAAACACTATGTAGCCATTCCCATATTTTTTCCCATCCCACTCTTAAA---AAAAAAAAAAAGTTAACATTTCAGATAAGCTTTATTATGGGGTGACAGATCTGAGGTTTTTAAATAGTGATAGAGGTGATGAGAAGAGTGGTGCTTCATCCCTGTGATGG-----TTTGTTGAAGAGGGAAGTGGAGAGAGTGCAAGGAGTCATCAGCTGGAGTGGCCTTTGGCCCCCCActtcagcacctacacagtgcctggcatacagtgggcactcaataaatatttgttAGCCGTTTGTGGGTGCTGGGGGTAATGGGTAATAGAGACTTCCGTTGGGTACCATATACAGGAAAGACTGTCTTACATCTTATATGTCTGGAGTTATTGGTTCCAGTTCAGAGGTAATTCCCCAATCCCACTCCACCCTTCGGTAGCCCCTCACCCTTATTTTCTGGGAGAAGGCTGGGCCCTCTTCCTTC-AGCACCCTAAGCCCCTTTTCCAGGGCTATACCTTTTCCGTGTGGAAGA-GAATGC----GTGGGCGTACACTCATTTGGGGAGGGAGATCA----TAGGACCCTTCACTTTTGGGGTTCCAGGATCTTAGAAATCTGGAGTCCTTCCCGACTGTCCCATCATGGATGTTCACTTTTAGAG----TCCCGGGCTCGTAGTGTCCTATTTTTGACCCTC a score=81293 s hg19.chr6_ssto_hap7 3511566 1750 + 4928567 CAGCTCTCGGGCTGCCCCCAGCCCCA-GCAGTAGCTGGGCTACTTCCACCGCTCCTTCCCGCGCCGCCAGGAATAGCGGCGTCTGCTCCTGT---------ACAG-AAGAGCCAGGGC--------CGATATCAGGGA-------AGGCCACGCCCACAGGACTGGGCCTTTCTGC-----------------CTTCACTTGCGCGACCACTGGCCCCTATCCCTTCAGGCTTTGCGGGTTACCGCACTTTCCAT-CTCTCGTGCGCCTGACTGTT----TTGTGGGAAGCCCTCTGTCCCA-TCTAACCCTGTTGTCCTGGGCATCTTTATCGGCTCCGGCCTGGAGAAGCGAGCGGGCGGCTCGGGCGTTGTTCACGGCAGCAGCCCAGTGCAGCGCAGTTTTCCCTAGGGGACGACGTGGGAGGTTGTTACCCCAG--TTGGGGGCCAGACGCCTGGGTTCCGGTTTCCCACGGGTTCTGGCCTTGGGGGAAGGGCTATTCGGGCCGGCTGGTCCCTCAAAGGCGGGAAGCGTTGCCCAGGAGACCA--------CCGGCCTGCAGGAAGTGTTGCCCTGGTGACGTCACCAGTGCGCGGGAGGGACAATGGGGCATTGTTCTGGGGTCGGTGAGACCGGGAGACAGTCTCCCCCCACGAGATTCCCCCCCCTTTCCACAGACACTGTGTTCCATGCCAGTTCCCCAGTAAGCTGGAGCGGAGGGCCAGTGTGGTGTTGAGGGTGGGAGTTGGGGGGGGAAACTCACGCGGCCCGTACTTCCACCGCATCTCAGATTGACCGCCGTAACAGCAGGATGAGAGGGAATGCCCC--------------TCTGCTGCACCTATATTTTGCACGCTATCTCCCACCCCATCTGCTCAACTTCTCTATAGCATAC-ATCACCCCTTCC-TCTACATACCCCATTTATCTCTGGCCCCCACGTCTGCTTGGGCTGCAATCAGTTCTTCAACCAGGTCTTCCACCGCCAGCCTGGCAGCCAGCATCAAGGGTGTGGTCCCGTCCTCTGTGCGAGCGTCCACTGCAGTTTGTCTGCTACGGAGCAGAAGCTGGGGAGACAGAG--GGCCACTGACACCTGGGGTACCTTGGACTGCCAACTCGAGTTCCTTACACTATTAACCCCACTCGCAATCCATATTCAGCCATCCTCCGCAGTTTCCCTGTCAGGTTCCCAATC--ACACCAATTTCCTCCTTGTCAAACTCTAGGGGATGCTTCTGTCCAGCTTTACTTGTAAGCTCGCCCCATTCCCTGTAGGGACCTCAGTGTGTGCTAACCTGGCAGACCTCCCGAGCATCAGCAGCCACAGCAGCATGAAGGGGTGTGCGCCCTGCCCGGTCTGGCTGGTTGGGGTTGGCTCCAGCCTCAAGGAGGCGGCGGGCAGCGGTTGGCCGGGAGAATCGGGCAGCCAGGTGCAGGGGGGTCTCCCCAGTGCCCACGGTGTGAGCCTGGGGACAGGCCCCTCCATCCAGCAGAGGTTCCCAGGGCTCAGGACATCCCAACCATGCCCCTTGGAAGGTCCCGGACTGTACTTCCCCACAGCAAACTGCTGACATCAGGGGTGTCACCCCATCTGTTGGTAAGACA---GAGTAATGGG-------TCAATCTAAAGGACACAACAAGGGGGAAGGGACAACATGTAAGCTCAGAGAGAATCAAAACCTGAGGTGTTGGGAAGCTAAGTTCTGGCTct-------gtgtggctttagccaagtgacttttctgcttttctctg-acttcagtttcttcctctgtaaaaggaACCTGCAG--CTTAATTCTCTGACATTCCAGGACAGTGGt s canFam2.chr12 4590610 1698 + 75515492 CAGTCCTCGGGCCGCTCCCCGCCCCACGTTGTAGCCGGGCGGCCTCCACCGCGCCTTCTCGGGCGGCCAGGAACAGCGGCGTCTGCTCCTgcggcgcgggaacagcggggggcggggcggtcggggcgaggccaggggcggggcgaggGCGCACCCACCGCGCAGGCGCTCCCGGCTccccgcgccccggtcgccccggtcgccccgccccc--ccccccccccTACAAGCTCT--------CCGCGCTCTCCGCGCTCCCTCGCCCTGTTTTGTTGCTCTTGTGGGGACCCC---GTCCCGGTCTGACCCTGCCGTCCTGGGCGTCCTTGTCGGCTCCGGCCTGCAGGAGGCAGCGGGCGGCCCGGGCGTTGTTGACGGCGGCGGCCCAGTGCAGCGCGGTTTTTCCTGGGGGACGACGTGGGGGACTGTCAGCCCGAGCCCGGGGACCAGACGCCTGCGTGTCTGTTTCCCACGGACTCCGGTTTTGGG---------CCTCGGGGCGGC------CTCAAAGGCGG-AAGCGTTGCCCGGGTGACCGGGTGACCGCCGGCCGGCAGGAAG------CCTAGTGACGTCCCCCGCGCGCGGGAGGGACAATGGGACATTGTTCTGGGCTGGGCAGGACCGG-AGAC-----CTCCCCGCCAGACCCCTCCCCC----CACGGACGCTCCTTCCTCTGCC---------------------------------------TGAGGCGAGGAG---GGAGGGGAA------GGGGCCCCTACCACC-----------------------CAAAAGCTAGGTGAGAGGGAAGCCCCCAGTCTCCAGTGGGTCCCTCGGGGGCTTCCTTTTGTGC---ATCTTACACCCCACCTGTGCCACTTTTCCAGAGCACACCACCACCCTCTCCAGATCCGTACCCCATTTATCTCTGGCCCCCACATCTGCTTGCGCTGCAATCAGTTCTTCAACCAGGTCCTCCACCGCCAGCCTGGCGGCCAGCATCAGGGCTGTGGTCCCGTCCTCTGTCCGTGCATCCACCGCAGTCTGTCTGCTGCGGAGTAGGAGCTGGGGGTCCAGAGAGGGCCAGTGATTCC-GGCGTGTCCTGGACTGCTAGCTCAGGCCCG--------------CCACTCCAAATCCATACTCAGCCATCT---GTTGTTTCTCTTTCAGACGCCCAATCTCACATCATCTTCCTCTCTGACAAACCTTAGGGGATGCTTTTGCCCAGCTTTACTTACCAGTT--------TCCCTGTAGCGGCCCCAGGGTGCACTGACCTGGCAAACCTCCTGAGCATCAGCAGCCACAGCGGTGTGAAGAGGGGTGCGCCCTGCTCTGTCTGGCTGGTTGGGGTTGGCTCCAGCCTCAAGGAGGCGGCGGGCAGCGGTTGGCCGGGAGAATCGGGCAGCCAGGTGCAGGGGGGTCTCCCCAGTGCCCACAGTGTGAGCCTGGGGACAGGCCCCTCCACCCAACAGAGGTTCCCAGGGCTCAGGGCTTCCCAACCATGCCCCCTGGAAGGTCCTGGACTCCACTTCCCCACAGCAAACTGCTGACATCAGGGGTGTCACCCCATCTGTGGGTGGGAGACATGAGGAATGGGAGACAAGTCAATCAAAAGGACATAACTGGGGAAGGAGgagaacatggaggctcagggagtatcag--ccccaggtgtcaggaagcccagctctggctcttgcttttgtgtggcttcagtcaaatgactttttt---tgactttgtgcttcggtttccttgtctgtaaaagga-ccagtaggccttaattctttaacattccAAGGcagtggt a score=65308 s hg19.chr6_ssto_hap7 3513644 1136 + 4928567 gagtctggatcagattcacctgaagggcttgttaaaaca--gattgcctaacattttaaattcctgagtcagtagctctgtagtggagcccaataatttgcatttctgacaaattcccaggtgatgctgattttgctgtctgaggaccacactttgagaatcattgTTCTAAGGCACTCAGTCTAAAATTATTTCCTCTAGTTCTGATATTAAAGGACTCTCTGATTCTAATAGGGTCAAAGGACTTTTTTTTTTTTTCTTGGTCTGGGTTGACTCACATACCAGGTCCACGGGTGTCCAGGTCAGGGGCTTCCATCTCAGATTCCTGGGGAGGAGTTAGCATGGCTGCCTGAGGGAGCGCCCCACAGCCACCACTCAGAGACCAGAGCTGGCACGTGGAGGGTGGGCCTGTTTCTTCAGCCTTTGGG-TAACAGCAAGGATCAGTGAAGG---TTGATTTGCCCTTTCATCCCTTCCATCACCTCCAGACCATTCTTGCCCCAGCCCTTTCACCTGGCCCACCTCCTCTCCCTCCTCAGGGCCTGAGCACATCACAACTCCATCCTCATCAACTTCTGCCTTTGGCTTCAGTGCCCTGGAAAGGAATGGGTGGGTAGAGGTTACACGGAATTATGACCATCAGGGTCTCCAAAATTTCCAGCAGGCTTCCCACCCCTCTCTCCTTCCCCTATCTTTGACTTCTGCAATAGTATTTCTTATCTTTTCTGATTGTAAATATCGCCATAGGAGAGACTCCCCTTCCTGAGCCTGGGTTTCTCCTCATTCTCACTTGAGACCAATGCTGTCCTCGCCTAGTGGGGGCCGGCGTCGGTGGGGAGCTGACTGAGTCCGAGGCCGTCGAGTGAAACCAGGGGGCAGCCAGAGAGCTCCATGCTCTCGGCGTCGACGCCGGATGAGCTGGAGGACGAGAAGAGCCCCTAGGGCCAGGAGAATCACCCCGGCCACTGGGGAGCACAGCACAGGCCAGGGAAGCTGGTTGGCAGGGGGTGCTGGTGGGAGAGACAgagtcacaaa-gagaggccactcctggtgagactgattactattgggagacctttggacaagtttagtagcctgtctttgcctcggtttccttatctgcaaaatggggatgataata s canFam2.chr12 4592318 1098 + 75515492 gagtctgtatcagacttacctggggagctggtgaaaacatgaattccccagtatctcagatttctgagccggtagctctggagtggagcctgagaatttatgtttctaacaatttccctggtgatgctcattcgtctgtcctgggaccacactttgagtgtcactATTCTAAGGCAGTAACCCTAATTTTGGTTTTCTCAGTTCTAATATCAAAAGGCTTTGTGATTCTAAAAGAGTCAAAGGGAGCTTTCCTTTG--CTTGGTCTGGGTTGGCTCACATACCAGGTCCACGGGTGTCCACGTCAGGGACATCCATCTCTGATTCCTGGGGAGGAGTCAGCATGGCTGCCTGGGGGAGCTCCTGACAGTCACTGCTCAGAGGCCAGAGCTGGCACTTGGAGGGTGAGGCCATTTCTTCAGCCTTAGGGATCAGAACAAGGATCAGTGAAGGAAGGTGACTTGTCCCTTCAACTCTGCCGTCACCTCAGGATCATTTCTGCCCCAGTGTTTTCAGCAGGCTCACCTCCTCTCCTTCCTCAGGGCCTGAGCACATCACCACTCCATCCTCATCAACTTCTGCCTCTGGCTTCAGGGCTCTGGAAGAGGGTGTTTGGCTAGAGG---------------ACCTTCAGGGTCCCCAGGATTTCCAGCAGCCTGCCTTCCTCTGTCTCCTTCCTCTGCCATCAACTTCTG------------------------ATGATAAATATCTCCACAGGGAAGAGTCCCCTCCCCGAGCCCTT-TTCCTCCTCACTCTTACTTGAGGCGGATGCTGTCTTCACCCAGGGGAGGCCGGCGTCTGCGGGGACCTGGCTGCGTTCGAGGCCTTCGAATGAACCCCGGGGGCAGCCAGAGGGCCCCGTGCTCTCTGCGCCGCCTCCGGATGAGTTGAAGGACGAGAAGAGCCCCAAGGGCCAGGAGAATCACCCCGGCCACTGGTGAGCACAGCAAAGGCCAGGGAAGCTGGTTGGTGGGTGGTACTGGTGGGAGAGACATAGTCACAAAAGAGAGACCATTTCTGGGGAGGCTGGGtactactgtgagacctttgggcaagtgcagtgactt---ctttcatcagtttcctcatctgtaaggtggtaataataata a score=2094 s hg19.chr6_ssto_hap7 3515633 88 + 4928567 gtacgtgcctcatggggttgtgggggaggattaaatgaggtaacaatgtaaaatgcttagagtaaggc---------acaaagtacgatataGCAGt s canFam2.chr12 4593416 84 + 75515492 gtacctgcctcatggcattgtcagg-aggattaaatgagttgataat----------tagagcaaagcctggcatgtagtaagtgctaaatgg--gt a score=142625 s hg19.chr6_ssto_hap7 3516023 2372 + 4928567 TATTATTCTTTCATGTACTATGAATTGTCTGATACAAAGACTATTAG--GTATTCTCAG-TCTGGTAGAGAAGATAAACCATCCCTTTGTTGGAGGGCTATGACAGAGGTTAGGATAATGTGCTTAGGGAAATAAGGAAGGAGACTGTAGAACAAATGGGCCAGTGGGAGATTCAGTTAGA-GAAAGCGGGGTTAGGGAAAGTAAGTCCCCACAAAGAACATTTTCAGTCTCAGCTGTCCTGTTTGATTCAGCCTCCATTGCCTGTTGCTAGCATGAGAGCTGGCCTGGGAACAGAGGTCAGAGAAA-GTGGCAAGGGGTCACCTACCGGTCCCTGCATGAGGGTGGACAGCCAGCAGTGGTCCAGGCAGCAGGGGCTCCAGGGCTCCCACTGCAGCCATCGCAGCAAGGAAGCGGAGTAGAAGCCCAGGGTCCCAGGGACAGCGGGATGCCGGGTGGTCAGGGCCACAGCGGGACAAATCCACACCCATGACCACCACAAACCTGTAGAGGAGGCACCTCAGAGACCTCTGTATTGGTCCCTGGCTCCCTTTCCTCCCTCTGCCCTCTTAAAAAAACTGGTGTCTGGCCCTTCCCTCCACCTAGCTTC-TTACCCAGCACTGAGGGAGTCGGTCTCCTTGCCCAGGGGCTGCGTTTGAGGGGCTGCTCTCTCCTGATAGGTGGGGTCCCGAGTTCCTCCTAGCTTTTCTTCAGCCCGGGCCCCAGGATAGGGGTACACCATGTCCCTGCCATCACGATCCTTCCTTACCCAGAGTCCTACCCTCAGAGTCAGGGACAGCACCCGGGCCAGGGCAAACAGCTGCTGGTCTAGGGCTGGGGGGCTCAGTACCACCAGCAGGGCCAGGGAGGGCCCCCACTCTGGGTCCCCATCTTCAGGCCTGCAGTCACCTCCATCCCAGCCACACTCTGCAGTGTTGCAGCCTTTCTCACAGTGCCCGTTGTGGAAGTGATCATGGCAGTACTGGTCATAGGCTGGACTGTGGGGTAAGGAGAGGGGGACTCAGGACCTCCCTAA-AACCTGACTCTTTTCTTCACCCTAGAAAGAATTCCCCATATTTTGTGC--CCTCTAGGGCTTTGGTTGCTAAGTGGGGGCAGCTGTGGAGCAATGAGCTTAGTCAAGTCCTGGATGG----TAGTCCAGACACCCCAATGTCTGCTAACACCCCTGTCTCCCTAGACTGTCCCCTCTCTGTACCCTCCCAAGCTCTCCTCTGTTTCTAAAGGAGAGTCCCAGGCCCTTTTCCCTCTGTGAGGTGCTGACTGCTAGGGGAAATACCCCATGGCAGCAAGGCTTAGGGAAGGAGGCTTGAGACCTGAGTTCCTACAACTCTTAGAGAGGAGCCC----AAAGGCCACGCCC--------------CACATTAAATACTGATGCCACCCCATTACCCTAGGTTGGAGTCCAGAGTCTTCGACCCCTGTTTAGTGATGGTTATTAGGGTGGAAACTCCCTGGAGCCCAAGGCTGTGGCCACACTGTAACTCAGAGCCATCTACGTCCTTCCTCCTCCTCTCACCCACCCCTCTCCT-TCCCTGGCTCCAGT---GGATTTCAGGCTCACGTGCAGGCTGGAGGGGTCTCACAGTCGTAGCCATCAAACAGACACTCTTCAGAGTCACACTGTGGGTGGCACTGCCCGTCCCGGAAGAGAAGCCAGCACCGAGAGTGGGAGGGGCAGCCCTTCCAGGGGTCTGGGACTCCCAGAGAGCAGTCCCCTCCATCCCAGTTTCCTCCCGGGCCACTGCAGCCAGCATCGCAGGCCCCATCTCCACTTCTGCCCTCACACCCCTTGGCTCCGGGTTTCTGACACCGGGGCCCTGGAGAGCTGTGAGGGCAGGAGCATCGAAAGCCTGGGCCCCCCAAGCCCGTGGTCTCTGAGCAGCTGCCATTGTATAGGCATGGGGAGGGAGGGCCACAGCCTTTAGGAGCTGGTGGGGTCAGGCAGTCAGGACCCCCATAGCCACTGAGGCAGGCACAGCGTGGTGGGAAGCCTGGCTTAGGGGAGGGCAGACACAGGCCTCCGTGGTGGCAGTGATGGAAGCCGCAGGAAGGGGCCCTGTGGCTGCAGGTGGGGCCTTCAAAACCCTGTGGAGGGGAGGGGAGATATTGGAGATGCAACTTGCATTATTC-TTCCCGCTCTCTATCAAGCAAACTCTTGGGTTAAGACGGTGCA-agggtcctagattctcatatctaaaaggcgcctcagagagcatcaagttaatcattttgtggatgttgaaacCATGTCCtgtggtaatttcacacaatgacatattacattctgttgaaaatggatgaagcacagctgtgtgcaacaacctgatggactgtggcattacagtgcaagtcctagaagactaaac s canFam2.chr12 4593500 2361 + 75515492 taggattCTTCTATGTACTGTGAGCGGTTCATCAAACCCTCCATCAGAGGGATGATTGGATTTAGTAGAG--GATAGACCAG-----------------ATAATAAAGGTTAAG------TACTTAGGGAAATAAGGAAGGATATTGAAGAGCAGATGGGCCACGAGGAGATACAATTGGAAGAATGAGAGGTTCCGGGG-GTCAGTCTCCACACAGAATATTTGGGGTCCCTACAGTCCTGTGTCATTTGGCCTCCATTGCTGGTT-CTGCCATGAAAGTGGGTCTGGGAGCAGAGTAAGGGGAAGTGTGTGTGGGGGTCACCTACCCGTGCCAGCACGAGGATGGGCAGCCAGCAGGGGTCCTGGCAGCAGGTGCTCCAGGGTCCCCACCGCAGCCATTGCGGCAAGGAAGCGGAGCAGGAGCCCAGGATCCCAGGGACAGCGGGATGCAGGGTGGTCAGGGCCACAGCGGGACAAATCCACACCCATCACCACCACAAACCTGTGGGGGAGGTGCCTCAGAGACCCCTGTGTTGGTCCCTGGCTCCCTTCCTTCCACCCG------TTAAAAAACTAATGTCCGCCCCATCCCTCTGCCCGGCCTCCTTACCCAGTGCTGAGAGAGTCTGTCTCCTTGCCTACAGGCTGTGTTTGAGGGGTTACTCTCTCCTGATGTGAAGGGTCCGGGGTTCCTCCCAGCTCCTCTTCGGCCTGGGCCCCAGGATAGGGATACACCATGTCTTTGCCATCACTATCCTTCCTTACCCAGAGCCCCACTCTCAGAGTCAGGGATAGCACTCGGGCCAGGGCCAGCAGCTGCTGGTCCAGGGCTGGGGGGCTCAGGACCACCAGCAGGGCCAGGGAGGGCCCCCATTCCGAACCCCCATCTTTAGGCCTGCAGTCACCCCCATCCCAGCCACATTCCGCGGTGTTGCAGCCTTTCTCGCAGTGTCCGTTGTGGAAGTGATCGTGGCAGTACTGGTCATAGGCTGGACTGTGGGGTGAGGAGAGGGGGACTCAGAATCCCCAAAGGAACCTGACTCCCTTCCTCATTCCAGAGAGC-TGCCTGATATATTACACTGCCTCTAGGGCACTGGTTGCTAAATGGggaaagctctcgagcaatgggcttaggcaggccctgggtggcagatagtctagtcactctaatgtctg-tgacacctttgtctccgaagactgttgcctctccctgccttcccaagctttcttatctccctgaaggagagaccaagacccttctccctcag--gggtgctgtTTGCTAGGGGAGATGCTCCGTGGCACCTGGGCTTAGAGAGAGAGGCTTGAGCTCAGAGCTCCCACAACCTTTAGAGAGGAGCTCGGACAGAGGCAATGCCCTTCTTCCTGGTCCCCATGTTAAATATTGATGCTGCCCTATTCCCCAGGGCTGGACCCTAGTGTCTTATACCCCTATTGAGCAACGGTTATTTGGGTAGAAACTCCCCAGAGCTTGAGGCTGTGTTCACACTGAGACCCAGAGGCATCTGTGTTCTTCCCCCTGCCTCCCCCTGCCCTCCACCCACCCCCAACCCCAAGTCAGGGTTTCAGGCTCACGTGCAGGCTGGAGGAGTCTCACAGTCATAGCCATCAAACAAACACTCTGCAGAGTCACACTGCGGGTGGCACTGCCCATCCCGGAAGAGGAGCCAGCATCGGGAGTGGGAGGGGCAGCCTTTCCAGGGGTCCGGGACCCCCAGGGAGCAGTCTCCCCCATCCCAGTTTCCTCCAGGGCCGCTGCAGCCAGCGTCACAGGCCCCATCTCCACCTCTGCCCTCACATCCCCTTGCTCCGGGCCTCTGGCACTGGGGCCCTGGAGAGCTGGGAGGGCAGGAACATCGGAAGCCTGGGGGCCCCAGCCCAGGGATCTCTGAGCAACTGCCATTGTGTAGGCATGGAGAAGGAGGGCCACAGCCATGAGGAGCCGGTGGGTTCAGGCAGTCAGGGCCCCCGTAGCCATCGAGGCAGGCGCAGCGGGGTGGGAAGCCAGGTTTAGGGGAGGGCAGACACAGGCCACCATGGTGGCAGTGATGGAAGCCACAGGAGGGGGCTCTGTGGCTGCAGGTGGGGCCCTCAAAACCCTGTGGAGAGGA-GAGAGATGTTGGGGAAGCTCCTTGTATTCTTCATCCCCTGTCTCGCCCCTGCAAA-----GGGTTAAGATAATtcagagggtcctagagtctcatatctggaaggggcctcagagagcatcagattcatcactttatatatgttgaaaccatggtccgtagtattttcacacaaggacatactacacagtggtgaaaatgggtgagccatagctgtgtgcaacaacttggGAGACTGAGCCCTTACAGAGCAG----TAGTA-ATTAAAC a score=96216 s hg19.chr6_ssto_hap7 3518725 2048 + 4928567 TATTATTATCTTACTCCTTAGAAATAGGATCATATGTCTTCCTCTTCCTCTggagagggaacaggatacaggaggaggacttaagtagatgtaagttattattaatattgaaattcttgggttaggttcatgggtgttacattGTTAGAATaataaaataaaagaagaccaggcataaacca---atgtcagtgtatcagg---------------aaccaaagcttaaga-ttagtctaattccatgcatctgaggtccataaaTACATATACAAACACACACAGAGTTAAAATAACCTATCTGAGGCCACCCACCACGCAGCTTGAGCTTGGGGAGCTCCTGACCTTCCCTTAGGCAACGCCTGTGATTTTTGAAAATTCCATTCATGCTATCAACTGATCCTGCCTT-GCCTTTGACTGCTTCTG-AGAGACACTTCCCACTGTGAGCTTGGCATGGCTTTTTCCAATAATTTCCACATCAGTGCTCACCCACAGTCCCTTCTGGGATTCCAACTGAGGTATTCTTGCCTTG--TCAGCATAGGGGGCAACAGAGAAGGCAGATTTGTGGTCACTTGCCTTGGGGCAGTGGCAGATGAAACCCAGGGGTGATCCTGCTGTGGCCTCACAGGTCCCTCCATGAAAGCAGGGTTGGCTGTGGCAGGGGTCTATCTCCACCTCACACCACTGGCCTGTAATTATGGGGGAGATTAGACGTCACACACTGCATCAGTCACTGCCTCCATCCTAGCTCATTCCTGGATGTTGGCCCAGTGCTAG-ATGTGCAGGTGAAGGGATCCTGGGGCATCTTTTCTGGGCGGGGGTGGGCGTGGAGGCA-GGGGATGGACCAGGTGACGGCTGCCGCATGGGTGGAGACTATCTGGCTCTCCATGGTCTGCTTGGCTGTGCTCCAGACACACTTGTGCCCCTTGTCTTGGGGCCTCACCTGTGTGTCCAGGCAGACACTGGCAGTAGAAGGCATTGGCCAGAGAGTGGCAGGCTGCAGTGCCTGTGGGGTGGCAGGGCTGGTCCAGACACTCGTCCACGTCTCCCTCACAGCGTAGCCCCACAAAGCCTGGAGGGCAGGCACAGTGGAAGCCTCCAGGTTTGGGAGTACAGGTTCCATGGTTGTGACAGGGTTGGGACTGACAAGCATCGAGTTCCTTTGAGCAGTTCTGTCCATCGTAGCCTGGGGCACACTGCAGACAAAGAGGATTAGACAGGGAACCAGTGGATGAGCCCAACCCAGCACTACAAGGGACCCAGCTCAAGATAGTCTGTCCAGT------CCCCCACCTTCCAGCTCAACAGCATCACTCAACTCACCATCCATCATGGCCATGTGTCAC-AATCCTTCTATCTCAACTCCCCATGAGACACAATTGTTGGCGACACACAACTCAAACTTCCC--CAGTCCCAAACAATCTCTATGACACACTGCCACCAAACACAGCACCATTTTTGGTAAAACCTTCCTCCCCT-GCTAAATACCTACCAGGCTCTCTCATACttt----attaattcataagcatctattgagtgcctactttgtgtcaggcaccgttttaggcactaggaatacaaagaaagttagaacccattcctatttcctggaagctctcagtcaaccagaggaaagaaaTGACTAGCATTTATTGCATGAtttatatacataacctaa--aaatccccctaatgacattttatttgggttatctcattcgatttttactttgcacgtaaggaagctgagtctctgaaaggtt-agtgacttgtgcaagtcaaatagctataggtggcagagctgggaatcaatgaaggtctgtgac-tccaaaccaatgctcttaaccattttctgctt-cttcatgccactcagctagTGAGAGAAGGGTCATTGGCAAGATCTGTACCACGTGCTGGCTTCTTGCAAGAGGAAAGAGAGTGTGCAAGAGTACAGTACCAGGAAGGCAGGCTTCAAAGA----GAGAAAAGGGAATTCACAGAGAATCCAAGGAGTGGTCAGAGAGCTGGAAGGAACAGGTGATGGGGGTGTTTTGG----------AGGAGGGAGCTTCATAAAAGAAG s canFam2.chr12 4595861 2005 + 75515492 TGAGATTCTCTTAATCCTTGGACACAGTGTTATATA-CGTTTTCTCTCTCTGGAAGTAGAACAGGAT---GGAGGAACACAGAAGTACACATGAGTTACTGTTACTGTTGTAA---TTAGGTTACGTTTATAGGTGTTATGTTGTAAGGATAATA----TGAAGAAGGACATGAACACACCAATGATGTTAGTGTGTCATGCATCTGAGGTCCATAAACACATGCATAAGACTTAACCCAATATCATGCATCCGAGGTCCATAAACAC----ACACATACACACAGAGGTGAAAGACCTTATTCATTGTCATC-------CAGCCTGACTTTGGGG---------CCTTTCCTTAGGCAGTGCTTATGATTTCTGAAAATTCCATTCATGCTACCACTTGATCCTGCTTTCTCCCTCAACTGCATCTGAAGAGTCACTCACCACCATGAACAGGGGCTAGCTTTCATGGGTAATTCCCACTCCAGTGCTC-CCTGGGCTCACCTCTAGGATCCCAGCTCAGGCATTCTCACCTGGCATCAGTGTTAGGGGCAAAAGAGAAGACAGCTTTGTAGACACTCACCTGGGGGCAGTGGCAGGTGAAACCCAGGGGTGGTCCTGCTGTGGTCTCACAGGACCCTCCATGGGAGCAGGGCTGGCTTTGGCAGGGGTCTGTCTCCACTTCACACCACTGGCCTGTGGT--GGGGTGGGATTAGACCTCACACACTGCTTTGGTCAGTGCTTCCTTCCTAGCTCATTCCTGGGAGTTGACCCAGCATTAACCTGCACAGGTAGAGGGATCCTGGGGCATGTTCTCTGGGGTGGGGT----TTAGAGACAGGGGGATGGACACAATGAC----------TAGGTGGGGATT---------------GTGAGCTTAGCTGTGCCACAAAAGTGCCTGCGCACACCCTCCC-AGGCCTCACCTGTGTATCCAGGCAGACACTGGCAGTAGAAGGCATTGGCCAGAGAATGGCAGGCTGCAGTGCCTGTGGGGTGGCAAGGCCGGTCCAGACACTCATCTACGTCTCCCTCACAGCGCAGCCCCACAAAGCCTGGAGGGCAGGTGCAATAGTAGCCTCCAGGTTTGGGGGTGCAGGTCCCATGGTTGTGACAGGGCTGGGACTGACAAGCGTTGGATTCCTTTGAGCAGTTCTGTCCATTGTAGCCTGGGGCACACTGCCGGCAAAGAGGGTCAGACAGGGAACTAGTCATTTGGGCCGTCCCAACACTACGGGGGACCTAGCTCAAGATCCTTTGCCCTGTGTCCCGTCCCCACCTTCCAGTTCAA-AACATCATTCAACTCACCATCTGTCACAGCCCTGTGTAGCTAACCCTTCCATCTCAACT--CCATGATACACATTCAGTAG---CATGCAACTTAACCCCTCCAGCAGCCCCAAAGCATC-CTATGACACATTGCCACTGAG------GTAATTTTTGGTAAGACCTCCCTCCCCTAGCCACACCTCCGCCAGGTTCTTTCAGGCTTTACTGattaatttggaagcatttattgaatgcctgctttgtgccaggctctgttgtaggcactagggatatgaagaaatttagaactcctccct-----------gctctcaATCAGCCAGAGGCAAGAGACCACTAGCAtgtattatatgattctcatacacaacctcatgaaactctcccccaaaccctgcatgtgtcttatctcatttgattctcactttacagaaaagttgactgattcctggaaagactgagtgacttgcacaagtc------tggtcggtggcagagctgggatgcagcacaagtctgtgacttcctaaccagtaccctGAAGCCTTCTGGGTTTGTTTTATACCACTCTGCCA--GGGGGGAGGGTCATTGATGAGGTCTGTACCATGTGCTGAGTTCTTGCAAGAGCAAAGAGAGTGTGTGAGA-CACACTACCAGGA----AAGCTTCAGAAAAGTGAAGAAAACGGGAATTATGGAGAATCCAAGGAGTGGCCAAAGGGTTGGGAGAAGCAGGCGAGCGGGGTGTTTTGGGGATGTCTGAGGGAAGGAGTCTCAGGAAAGGGG a score=8075 s hg19.chr6_ssto_hap7 3521091 169 + 4928567 AAGTAAAGCTGAGTAATGGGTGCCCAGAGGTTTACTACTGATCAGTATACTGCTTTTGTTTATGTTTGAAAATGTTCATAATAAAAGGTTAAAAAATAAAATAAAAAAGTGAAAAAAGAGGGTAGGTTAGGGTATCTGTCTTGAGC-CTTCTATCAAAAGTTGTGGTTCT s canFam2.chr12 4597866 166 + 75515492 AGATAAAGCTGAGTATTGGGCACAGGGGTGTTTACTACTAATTAGTACCCTTCTTTTGTATATGTTTGAAAATGCTCATGATAAAAAGTTAAAAAATAAAATTGAAAAGTTAAAGAGAAT----GCTTAGGGGATCTGCATCAGGCTTTTTTATCCAGAGTCAGGGtttt a score=42733 s hg19.chr6_ssto_hap7 3525504 983 + 4928567 AAAGTTgtggttctgagcatatgaatcaggctgcttagacttgaatgccagctttgcctctcctggcttagtgacctggaccacaaagaagaggccctaatccagcctggggagaagttagggacaccttcctgaagaagatgcctcctgaacaccagcctgtggaagaggggttgggaaggccattccaggtagtgtcaatagcagggataaaggctgagaggcaagaatcagt--atggggtacgtggcaaagtcagcagcagtttcatgttgctggagcagagagtagaagggt-gggatggggagagctgaggcctgagaggcaggcagggctgggtcatgcaggccttggactttattcagaatgaggcgggcagcctccgaaggttcagcaggggagagacaggtcaactggacattttcagtagagtaccctggccacggggtaaaggctgaacctatagaaggacaagtgtggaggcagagactgtagttaggagg-----------ctgatgcaa--------gtatctatctggaacgcaacaaaggtcaggactcaggcagtgggacaaagggtgaaggtgaaagcacagacttgagaaaacttcaggagataaagtggcatgactttgtggttagttgggtgtgtggggttaaaaaaaataaaaggagGTGAAATGGATACATTGGGTCTTCCCTCAGTCACTACTGTCTCTCCCATCCAGCCCACCCTTGTCTTTCCTCCCC---CTTCTCCTGCAGACCCTCTCACCTGGCAGAGATACCCACTGGGCTGGGCCATGCAGGTGGCCCCGTTCTGGCAAGGCCTGGACTCACATGGGTTCACGTGATCCTGGCACAGGCTGCCTTGGAATCCAGGGGGGCAGTGGCAGAAATAGGAGGGGCCGCTGTCGACACAGAGGCCTCCATTGTGGCAAAGGGAAGAGACGTCTATGCCTGGGGAGAGAGACAAACAGGGATATACAAAGATAAGTGGGGg s canFam2.chr12 4598221 933 + 75515492 AAAGTTGGGGTCCTGAGTATAGGTATCAGGCTACTCAGACTTGAATCCTAGCTTTGCCTCTGTT-GCTCAGTGACCAGAACCACCAAAGAGAAGCCCAAACCCAGTCTGGAGAGAAGCTAGGGACATTCTCCTGAGGAAGGCACCTCTTGGGCACCATCCAATGGAAGAGGTATGGGGAAG---------------------------------GGCTGG-----AAGAGCCAGTAGATGGGGTGTgtagggaagccagtagca----------gctggagcagagagaaggagggtgggggtggggcgagatgagacctgagaggtgggcaaggctgggtcacgtgggttttgaacttcagggttagagaggtgggcagccactgaa----------gggagtgacaggtcaacttaaaattttcaacagagcaccctggtaacagagtaaaggctgagcctacaggccgacaaatatggagctggggacagtaatcctcagggtgaaggattactgaggtaatcctcagggtgcccaggtggtatgaaacaaag--ccgga-tggagcagtgggacaaagggtgaaggaggaaagacagagtggtgaaagatttaggaggcaaag-ggcatgggctggtggtaggttggatgtgtggggt--aaagaaaggaaaggag-----atgactATATCACTGCCCGGCCCAGGTACT----TTTCCCACAGCTGGTCC-CCCCGGTCACCCCTCCCCGTTGTTCTTCTCAAGACCTGCTTACCTGGCAGAGATACCCATTGGGCTGGGCTATGCAGGTGGCCCCATGTTGGCAGGGTCTGGACTCACATGGGTTTACCCTGTCCTGGCAGGTACTGCCTTGGAATCCAGGAGGGCAGTGGCAGAAATAGGAGGAGCCACTGTCAATGCAGAGGCCTCCGTTCTGGCATAGGGAAGAAGCTGCTGTGCCTGAGGAGAAAGGCAAAGAGGGATGGAAAAGGCTCAGTTGAGT a score=18354 s hg19.chr6_ssto_hap7 3527172 550 + 4928567 TATTCAGGGCC-CAATCTCTGGGTGTAGAGGCCTTTACCTTGGGGACCACTAACATTCC-----TGGGTGGAGACTGGTCTGGGCCCAAGGAGTTAATAACTCCTGGCACTGAAGAAATTAGACCATCGAGTTTTACCTCTCTCCTCACCCTTTCTGCCAGAATATTGGAGACATA------CCCCTAAAGCTTATCATAATGTTA-AAGCAACTGTTTTCTTGGCTTAAAGCAAGGCTTGAGCAAGAAATAATTCAAGGTATGCCTCAAGTGAGG-----ACAAGTGGCTTAAGTCTGTCCCCTGAGTTCTGCATTCCTTTAATGTTCTCTCCCTGTGATTCCCATCAGCTATCCCTTAACTCCATCATAATCTCTTTCCCGAGCTCTTCTCATATCAAACCTTATTTT---------AGTGTTCTTTTACAAAGAGGG-TGGCGTGACATCGAAGTGAGTGGGGTGGGGTGAAATGTGTTGAGTGTAGCTGG---ATTAAGTGTGGTCCACTCTGCCTGGGTTATGATGATCAGGACAGAGTTGAGTTGCTCCACGTTGAGTCATGTCCCTCATGGTTG s canFam2.chr12 4599162 556 + 75515492 TCTCAGGGGCCACAGACCCTGAGCTGAGAGGC-----TCTTGGAGATCGCGAACATTCTTGGGGTGGGTGGAGGCTACTTGAAGCCTGAGCCCTCAGTAACTCCTGGTGCT-AAGAAGTTATAATATCAAG----ATCCCCCTCCT-GCTTGTTCTGCCAGAA---TGGAGAGAGAGGATCTCTTGTTAAGCTTATTAGATCATCATAAGCACCCATATCCTTGGTTTAAAACAAGTCTCAAGCAAGAAGGAACTCAAAGGAAACTTCAGGTGGGGGTTTAACTAATGACTTGGGTCTGTCCCCTGAATT-TGCA-TCCTCTGATGTTCTCTTGCTATGATTCCC-------ATCCCCTCACCCCACAGGAGGCTCCTTCCTGAGTTCTGCTCATGGTCAGCCTCATTTGGTTGAGGGAGGTATTCTTTCACAAGGGGAGTTGACATAACATCAGAGTGAGTGGGGAGCAGCT-GTTGAGTTGAGGGCCATTGGGTTATTAAGTATGATCCACTCTGGTTGAGTTATGATGATAGTGACAGAGTTCAGTTGCTTCTCATTGAGTTGTGTCCCT-GTGGTTG a score=26787 s hg19.chr6_ssto_hap7 3527722 556 + 4928567 GGTTAAACTGGAATCCTGTGGAATGGGCTGGTTGGTGTTGCTTGAATTGCGTTAAATGAGGTAACAGGAATTGTGTTAGGCTTCTCTGA---TTGCACAATTCAACACCTCTGCAATCAAGAAC--TGATTTGTCTGTGTGGTTTTGATTCTCAGGTGGTTGTTTTGGCCAAAAGC--TGTGTGGAAGCCCACAGGAACGGGGCAGGTGAGAACACCCATATTTTCTTCATTTGCTCTCCAGTCAGTGCCGGCGTTGGTTACCTTGGCTCAGTGCAGCCTTCTGGCAGGAGGACAGTGGAAGGTTGCAGAGAGGCCCGGTCCATCCCTGGAGGCACAAGCAGTGGAAGGAGGGCCCAGTCTGGAGGCAGTGGGAATTGCGTGGGCAGGGCTTCTGGGCACATAAGTCCATCAGAGTCTGAGGGGTGGGAGGGAGCGTGAGGCAGGACATAGCATCAGATTCTCA-GCCCAGAGATGGTCCTCTGCCCACTCCAGCTCCTCGAAATCCCTTACTTCAAAAACCTTCTCCTGAATGGCCTGGGACCAGGTGA------------CCCTCCCTGGTTTC s canFam2.chr12 4599933 542 + 75515492 GTTTCAACTGGAGTCTTATTGGCTAAACTGGTTGGTGTTGCTAGAGTTGTGTT--------------GAGTTGTGTTAGGCTGCCCTGAGGGTTG-----------AGCTGTAGAATCACTAATAGTGTTTGTTCTGTGTTACTTTGAGTCTTAGTTGGTTGTTTTGGCCAAGTGTTGTGTGTGGATGCCTTTAGGGCTCAGGTAGAGGGGGACACCC-TTCTCTCTTTGTTTGCTCCCCACTTGGTCCTTGGGTTAG-TACCTTGGCTCAGAGCAGCCTTCTGACAGAAGGACAGTGGAAGGTTGCAGAGAGGCCCGGTCCATCCTTGGAGGCACAGGCACTGGAAGGAGGGCCCAGTCTGGAGGCAGTAGGAATTGTGTGGACAGGGCTTCTGGGCACATAAATCCATCAGAGTCTGAGGTTTGGGAAGGAGCATGAGACAGAGCTGAATATTATGTTTTGAGGCCCAGGGATGGTCTTCTA------CCAGCTTCTCAAAAT-CCTAAGCTCTCAGACTCTCTCCTGAATGGTCTGGGGCCAGGTGATAGCCCCCCTACCCCACCCTGGTTTT a score=32309 s hg19.chr6_ssto_hap7 3528278 592 + 4928567 CCTCCCAGCCACTTCCCTCCTCAGCACGCCTGACTTCAATGGC---CCTCACCTGGCAGCTGCCTCCGGTGTAGCCAGTGGGGCAGAGGCAGCGGGGACCCTGAGGGCTGTCCTGGCAGGTTGCCCTATTCCTACAGGGGCT-GAACAAGACAGAGACAGGGCATGATAGGAAGAAGTTCGGGCAA-CAAGGGGAAGGTAGTGTGTGATATTGTCGGGAGGCAACCACAGGGAGGTGGCAAGCCAGGAGGGAAGGCGGAACGA----------GGTGTGGGGTGGGAGGCAGCCTGGAACCCAGGGGGAGATGAGAGGAGGGGTGGGAAGGCTGAGGGGTT---------------TTCTCCCTTCTAGGGGTCTTTGGGCCCTGCTCACCTGTCTGCACAGCTGGGGCGGAGCTTTCCCTCACAGCGCGGGCCCTGGAAGCCCATGGCACAGAGGCAGGAGAAGGTGCCAGGCCTGTTCACACAGGTACCCCCATTGAAGCACGGGGCTGGAGAGAGGAGGCTGTGAGGGTTTGGGTTCCTTGCCTGTAACCTGGCCTGTGACCTCAGTCACACTGTACATAGGACATACACCCCCCAC-------CCCCATCAAAACGACAGCTCAC s canFam2.chr12 4600648 596 + 75515492 CCCTCCAGCCACCACCCTCCTCAGCACACTTGGCTT-AGTGCCCCTCCTCACCTGGCAGGTGCCTCCCGTGTAGCCAGGGGAGCAGAGACAGTGGGGACCCTGAGGGCCATCTTGGCAGGTTGCCCTGTTCCTACAGGGGCTGGAACAAGACAGACACAGAGCACAGTGGGAGGAAGTCCAGGCCATCAAAGGGGAGGGAATGTGACGTGATG----------------GTGAGATGGGGAGCCAGGAAGGGAGGCAGTGTGAAAGGATGTGGGGTATGGAATGTGAGGCAGCCT----CTCCAGAGGAGAT----GGAGAGGCATGGAGGCCAAGGGGCCAAGGGGCCAAGGCCAATCTTCC-TCTAGGGGTCTT-------TGCTCACTTGTCTGCGCAGCTGGGACGGGTCCTTTCCTCACAGTGGGGGCCCTGGAAGCCCGCAGCACAGAGGCAGGAGGAGGTGCCAGGCCTGTTCACACAGGCACCCCCATTGAGGCACGGGGCTGGAGAGAGGAGGCTGTGAGGGGTTGGGTTCCTTGCCCGTAACCTGGCCTGTGACCTCAGTCACACCACACACAGGACGTACATGCCCTCCCTGCTGGCCCCATCAAAAGAGCATCCCAT a score=50764 s hg19.chr6_ssto_hap7 3529095 1038 + 4928567 GTTCAATTAAATTTTAAAAAATATGACACAAGCATACCCTCCTTAGTTCTTCCATTCTCCTGTGGACCCCAGCCCCATGACACAGTGGGCACTCACCAGACACACAGTAGTCAGTGCTGGTTTGGCACTGGGGCCCTGTGTGGCTTGGAGGGCAGGTGCAGTAGTAGCCTCCAGGGCTAGGGTTGCAGGAGCCGCCATTGAGACATGGCCCTGAGTGACAAGCTGTCATCTCCTCACTACAGGTGGGTCCTGAAGGAAACAGGTGGGGGCTGAGAAAGGGTGTcctccttccctccctccgctctccttct-ctttcctcttccttcccttcctcatccccaaccctattattctttcccat-caacctccgttctcaccacctcccACACATCACCCGTGTCCCCTGCAGTC------CAGTTCTCCTTAGTGGTGACTGAGACTCAGGGCCCGTGGTCGCCTGCCT----TACCCTTGACATAGGGGGTGACCAGCACAGGGTGTATATGGTTTAGGGAGGGTCTCACCTGTGTAGCCTGTAGGGCAGGTGCAGTTGTAGCCAGAGGGCTGGGGGTAGCAGGTCCCCCCATGGGCACAGGGTGCAGAGATGCAGCCCCCTAGCTCTGCCTCACACTCTGGCCCCGTCCAACCCACGTCACACACACATGAGGATCTGGTTGTAAAGAGAAAGGGGAGGGTTTTTCTCTTCTCCTACTGCTTATGT---TCCCCTCCCTGCTGCCTGGACCCCTATGACTTCCTCTTCTTTTGGCCCTGAGATTCTGGCCTCTTTCTTCAGTGActttgctctcagcaccgcccccatcctccccaacacctgctcattttctccaactagatatatgcatctatatatctagttggagatatatatatatatatatacacacacatatatattctttctgtaacttacttattttctgtctttct---ttagaatgaaagctctacgagagcagttgctttatctcttttgctttgtgt--ttcccccagggcctggaacagtagccacacaaagtaggtgctcag s canFam2.chr12 4601250 975 + 75515492 GCTCAATTAAGTGTT-TTTCTTATAGCATAGACACACCCTGACCAATTCCTC---TCTCCTCTGTGGCCCAGCTGAAGGACACAGCAGGCACTCACCAGAGGCACAGTGGTCAGTGCTGGTCTGACAGCGGGGCCCAGTGTGGCTTGGAGGGCAGGTGCAGGAATAGCCCCTAGGGCTGGGGCTACAGGAGCCACCGTTGAGACAGGGCCCTGAGTGACAAGCTGTCACCTCCTCGCTGCAGGTAGGGCCTGTAGGAAATGAGGAGGTTCTGAGAAAGGGAACcct-----cttctctcttgtcttcttctacctccctctccttccttttcctcatccccatccc---tgttctccccCATCCAACCTCTTTTCTCACCACCTTCTGCACATCACCTGCATTCCCTGCAGTCTCTGTTCCATTCTCCTTGGTGGTGACCAAGACCCAGAGTCCTTGGACACATGTCTTTACTGCTCTTGGT-TAGAGAGTAGCCAGCCCAGAATGCCTGTGGTTTAGGGAGGGCCTCACCTGTGTGGCCTGGGGGGCAGGTGCAGTTGTAGCCAGAGGGCTGGGGATGGCAGGTCCCCCCATGGGCACAGGGCACGGAGATGCAGCCTCCCAGCTCTGCTTCACATGCTGGTCCTGTCCAGCCCACATCACACACACATGAGGATCTGGTCATAAAGAGAAAGGGGAGAGTTTT----TTCTTCTAGTGTTTTTCTCTATCCCCTCCCCATTGGTCAGCCCCCTAAGACCTCTTGTT-TTTTAGCCCTGACACTCTGGCTCCTTTCTTCATTGGCTCTGCACTCAGCATTGTCCCC------------------------------------------CTTCCATA-----------------------ATATACATGTGAACATGTACATATGTCTCTCATAACttgtttattgtctgtctttcctcattagaatgaaagctccatgagaacagacatgttgtctcttttgttatgtgtggttcccccagtgccttgaaaagtatccacacatagcaggtgcccag a score=40945 s hg19.chr6_ssto_hap7 3530449 826 + 4928567 TATTTTTCTAATGAATGATTAATTCGCCCTGGGATTTAGTGCTCTTCTTTCTGCTCTGACCCCCTGGTCCTCTGTTTCCACCAGTTTTTGTGGACTCTCTTCTCC-TTGGATAACACTTACCAGTTGAGCCCTCCCACTGCCT-TGCCCTAAGAACTTTGCCATCTCCTTCCTTTTCCCCATTGGTCATTTCTCACAGACCTACATCTCACTGGCTGTCTTCTCCTGTCCTAGC-GAAGGGAGCCCAAAGGAGGGGGCAGATGGGGAGGGTCTGGAAGATGTTACCTCTGGCAGTGCCCGTGGTGGCAGGTGCAGTTGTCCTCAGGTGGGGCACAGCCAGGGCTTCCATCAGGACAGAGGCAGTTGGCCTTGTCTTTCTGGTCCTTACATATCTGCTTGGGCTGGCACAGGTTGGGAGCACACAGGGGAACCTCACAGAGCTGGCCTGGGGTGGGAAGATGGGTCAAAAAGAAAACAGCTCCTCCACATCCTTCATTGGGCCAAAGCCACATCCTTCATTGGGCCAAAGCCACTTCTTATGCTTGCCTTACTCACTCCCTATGAACCCATGAACCTGTCCTTCAATGGGTCCCTATTGCCTTTAAGATATTGTTTAACTTTCTCAGAATGATATGCAGAGTCCTGCAGGACATGACATTTGTACAACAGCTGTGTTtctcatctttgccttgctgtacccttaactctgactttcttacagttccttaaatgggg-tgggcttttcttccatctgtgtctttgcacatgcagttatctccagctaaaacacactatctggcactctatttagacagactcctgaccatcc s canFam2.chr12 4602225 775 + 75515492 tgtttgtctaatggatgTTGAGTTGGCCCTGGGATTTGGTGCTTTTCCTTCTGCTCTCACCGCCTACCCCTCTGTTTCTCCCGTGATTTATGAACTCCCTCCTCCATGGGATAGCACTCACTAGTTGCGCCTTCATGTTGGCTGTGACCTCAGCACTTTGCCATCTCCTTCCTCTTCCCTCTTGGTCATTTCCCACCAGCTTGCCCCTCACTGTCTGTCTTCTCCTGCCCTAACTGAGGAGGACCCAGAGGACAGTAAAAATGAGGAGGGGCTGGAAG--GTTACCTCTGGCAATGTCCATGGTGGCAGGTGCAGTTGTCCTCAATGGGGGCACACCCAGGGCTTCCATCAGGGCAGAGGCAGTGGGCCTT---------GTCCTGGCATTTTTGCTTGGGTTGGCACAGGCTGGGAGCACACAGGGGAACCTCACAGAGATGACCTGGGGTGG--AGATGGGTCAAAGAGAAAACAGAGTCCCT---------------------CCATATCCTCAATGGGACCAAAGCCACTTCTTACATATGACTTGCTTACTC--------CCCATGAACCTGTGCTTCAGTGGTTCCCTGCTACCT--------CAGGCTAACTTCCTCAGAATGACACACAGGGCCCTGCATGACACGATtttcctacaactgccgtgctcctcagtttcactctgttgcaccctaaactcaggacgttctgtggttccttaagtggggatgtgcttttcttccgtccacacctttgtgcat-cagttacctgcagctaaaacatgcagt----cattctattttgacaaactcctacccattc a score=41905 s hg19.chr6_ssto_hap7 3531944 865 + 4928567 ttcaagactcatctcagccatcacctcctc-------------catttttagtctgggttggctggtcctctgtgctcttgtaatatcctgcacgtttttctctcagagcacctctgtgggctatgatcaacaggagacttgttggtctctctgtattagacttaaagtcacatgaagatggcaactgtcttactcagatttgcctccgtatctggcatagtaggcagttggtaagtgcttgctaaataagcaagtGAATGCCTTT---TCTTTGAGCCCCGTCCTCTGCTCCCAAGCCGCAATCACACCATTTACACTGGGCCCA-TGTGGGCCCTA-CGGTAACCCCTGCCCTTGTCCCCATGGTtgtacaattgtgcaggttttacactaaataactttaaaggataccattctcattctattctcacaTCCCAACCATCAAACACCCACCAATGAACTCTGCCCCAACCCAAATGGAATAAAATATTCTGCCAGTTCTTTCCAGTGCCTCCCCTGTGAACCTGTGAAACCAGAGGGGCAGAGGCAAAAGAAGGCTCCTGGAAGATCAAGGCAGCTGGCTCCAACGGGACATGGGTCACTCAGGCACTCATCCACCTCTGTTTGACAGCGTGGCCCTTCAAAGCCTGTGGCACAGCAGGAAGGTCAGGGACCTGCACGGATGTCTGCCTCCTGCTCCCGCTGTCCCCCACAGTGTGT--GCCCCAGTTTACCTGGGAGACACTTGCAGTGGAAGGCTCCAGGCTGGTCCTGGCACTGCCCACCATTGGCACAGGGAGAGCTTCTGCACTCATCGATATCCTCCTCACATCGGGTGCCGGAGAATCCTGGTGGGGC-GGAAGTGGGTGGGGAGAGGAGGCCAAG s canFam2.chr12 4603000 833 + 75515492 ttgaagactcagcttagccatcacctcctccatgaagctttctcatctctagtct-ggttggctggtcctttgtgctccTATTGAATCCTATGCAGTCCTCTCTCAGAGCACCTC--TGGGCCATTGCCCAGAAGAGACTTCTTGGTCTCTCTGCACTATATTTAAAGCCAGTTGAG---AGCAGCTTTCTTACTCTG-CTTATATCTGTGTGGGGCA---TAGGATATTAATACGTTCTTGCTAAGTAAGTGCACAGATGGCTTCCAGTTTCTGAACCCTG-------------------GATCACACCATTCCTGTTTGGCCCAGTTTGGGTTCTACCAATGACACCTGCTGTCAGCACTCAGGTTGC------------------------ATAACTTGGAGGAGTTCCAGTCTCATTTTCTTCTCACATCCCAACCCTCAAATGCCCAGCAATAGCCTCTGCTCCACCCCAAATGGGCTCAACTATCCTGCCAGTCCTTTCTAACGCCTCCCCTGCTGACCTGTGAAGCCAGAGGGGCAGAGGCAAGAGAAGGCTCCGGGGAGATCCAGGCAGCTGGCTCCAGTGGGGCAGGGGCCACTCAGGCACTCGTCCACCTCTGCCTGACAGTGTGGGCCTTCAAAGCCTATGGCGCAGCAGGATAGTCAGAGGGCTGCATGCAGGTCTGCCCTTTGCCCCCACTCTCCCCTCCAGTGTGTGAGCTCTGGTTTACCTGGGAGACACTCGCAATGGAAAGATCCAGGCTGGTCCTGGCACTGACCCCCATTGGCACAGGGAGAGCTTGCACACTCATTGATGTCTTCCTCACACTGGGAGCCTGTGAATCCTGGTGGGGCAGGAAGCAAGTGGGGAGAGATTGCAAAG a score=50183 s hg19.chr6_ssto_hap7 3532822 1780 + 4928567 GCACAGCATGGCGCCTTCCCTTGCCAGGAAAGGTGAACTTGCAGAGCTTCCCAGAGAAGACACCTGGGGCAGGTGAGCGTGGGGTGACAGGAGATGATGCAGAAAAGGTGAAgctcagccacctgccagctgtgtgactttgggcaagctggtcaa-ccctctaggccccagtttcctgttctgtgtaaaaggggaataataatggaacctacctcatggtactgttaaaaagattaaatgacataacgcctgaaaagtactcagccaaatg--gctagcc-tggagtaagtggtgaataagtgta-gttattatAATAGCAGGGGACAGAGGAGTGTCCGGTGAGGCTGGAGAAGAAAGGCTTGGGGCAGCTTTTGCTGGGTTTATGATGAG-AGTGCCAAGACCAGCCTGGGACCTCAACATGCATACACAGAGGCTGTGCAGGAGGACTGGAAAGGAGGGATCTTTGGGTGATTTGGTAGGACAGAGATGAGAATGGGCAAGTAAGCAAGGGAAGATTTGGGGATGTAAGAGTAGAGATTTTGGGGAGCAAAGACAGATTTGGAGGACTCCTTGGCTTGGCTAGAGAGAGCTTCAAGTGGCCTTGGGTGATTGCTGAGCCTGAACTCTGCAGGTTCAGAGGCCTGGGGTCTGAGGGTGGCCAGAGAGGCATCTGTACTCACCAGGCAGGCAGATGCACTGGAAGCCGTTGAGCAGGTCATGGCAATCCGCGTGGTTCAGGCAGGGAGCTGAGGCACACTCGTTGGTCTCCACCTCACAGAGCTGCCCTTCTAAGCCTGGGGACATGGGGACC--ATGAGGGCTGTGGCTCAGCCAGGT--------------------------CTGCCTGGGAGACCTGTGTTCTAGAATCGGCCCTGCTCCTGACTTGCCCCACTCAGGCGGTCCTCCCCCGAGGTGCTGTCTGCATGGGGTTGAATAAGATGAACCCTGAGGCCCTGCTGCTTCGCAGTGTGTGGCCCTGC-TCCTTGAGGTGTGAAAGGCCAGGGAACAGGGTGCTTGCTGGGGACCTGCGGGAGGACTACAAGG-----CTTTCTGGTGGCCATTCCTGTGTATACAGAGGGCGGGGCTCACCAGGGCAGGCTGATCAGCCTGGAGGACCTCAAGGTACAAATAGGAACAA-----ATTGGCTTGGAGAATGAGTCCCGCTTCTTGTTCTCCCTGGGTGGGCCTCCATGCTAGGGAGAACAGAGATCCCAAAGTGGAGGAATTTGAAGTGCATCTGGGAAGCTTGTTGCTCCTATATTTGTCCCGTTGCTTTGGGTTCATCCTGGTCTCCACTGTTTCATCCTGAATTGAGGTGGGATCAACCTCTGGACCTTGGCTTCCTTTCTTTTCTTGCCTGAGGAGTCTGCTTCTGAAGCTCCTTGATATCTACAATGTTGTCCCTTGGGTTACCGAACCGTTTTCTCTTATTTCTCTATGATTGTCTGTTGGGTGACCTGAGCCAGTATCTTTGGGTGCCGCTCAGTTTAGAAAGTcaatatggggtagtggttataattgttgaagcccttggtttgaatctcagctctgccacttgctagctgggtgaccttggacaagtcacttaaactctctgtgcctcagtttcttcagttataaaatgggca--------gtgctgacctcatagggttattgtaataagtagatgagacaatgcctgtaagatgctcagacagtacctggcataaagttggcgattaTTTTTCTGATTTCATTCAACTCCTTGATGTTGGCTCTGTTGCTGTCTCCCTGGGGCGA--CTTTTCCCCCTTAAAAC s canFam2.chr12 4604239 1462 + 75515492 GCAAGTCCTGGCCCTTCCCCTCAACAGA----GTGAACCTGGAAGGCTTCCCAGAGCAGACACCTGGAG---------------------------ATGCCAGCAGGATGATgctcagccacctgccagctgtgtgactttgagcaagctactcaagctctctaggctccagttccctct-----gtaaaaggggaataat---gcaacctatcttatggtgtcattgaaaggtttaaacgagggaatgcctgaaaagtacacaaccaagtgtaaatagtaatggagtaaataatcaaggaacatccattatCATCATAGCAGGGAACAGAGGGAT--CTGATGAAGCTG-AGAAGGAAGGCCTGGGGCAGTGTTCGCTGTATCCAGGGTGACCAGTGCCAAGACCAGCCCAGGATCCCTA-------------------------------GGAACAGGGAGAGCCTA---------------------------------------------------CTGAGGAC---------------------------------TCTGGAGGA----------GGGCCAGAAAGGGT--------GGTTTAGGTAA-----------------------------------------------------------ATATGCACTCACCGGGCAGGCAGACACAGAGGAAGCTGTTGAGCCCGTCGTGGCAGTCAGCCTGGTTCAGGCACGGAGCAGAGGCACACTCGTCAGTCTCCACCTCACAGAACTGCCCTTCTAGGCCTGAGGACATGGAGGTGTGGTGTGGGCTGAGGCTCAGCTGGGTTGGACTGACTGGGCCGCTCACCCCTTCTGCCAAGGAGGCCTGGGTTCTAGAACCAGC----------ATGTGCCCTG-TCAGGCAGCCC-CTCCCAGGGTGCTCTCTGACTGCGGGCTGGGGAGATGAGCCC-GCAGTCCTGCTACCCTGCTGTGTGAGGCTCTGCCTTCTTCAGATATAAAGGCTCAGGGAGCACAGCACCTGCTGGGG-CCTGTGGGAG--CCGCAAGGAGGTACCTTTTGGGGCCGTTTGCTGC----ACAGAAGGTGGG-CTCATCCGGTGGGGCTAATGAGCCTGGAGGTCCTCATGGCACAAATGAGACAAATGGGTATCTGCTCGAAGGG-GAGCCAAGCCCCTTGTTCTTCCTGAGCAGGC-------------------------------------------------ATTTGGGAAGCTGGTTGGTCCCAGATCTGTCCTGCATCTTTGGGCTTGTCCTGGTATCA---TTCTCACCCTGACCTGAAACTGGCTCGGCCTCTAGACCTCAGCTGCCTCCCACTTCTTGCCTGGGGCATCT---------------TGGTAACTAT--CCCTGGCCCTTGGATTGCTGGGCAGTTTTCTCCACTTTTTA---------------------------------CTCTGGATGCTGCTCAATTGAGGAAGGCTGTTTTGTGTAGTGGCTAAATCTATggaagccctgggcttgaatccttgccccgttgcttactagctgg----------acagctcacttaatctccctgtgcctcagttccttcatttgtaaaatgggcacagctacaatgctgacctcataggattgttgcag-----agatgacaaaatgcatggaagatgcttaggtggtacctggcactaagtaagcTAGTATTTTTCTGGTTTCATTCAGCTTCCTGATATTGGCTCTGTCTCTGTGTCCCTGGGGAGAACTTTTTCCCTCTTAGAAC a score=155009 s hg19.chr6_ssto_hap7 3534602 2904 + 4928567 TAGCCTGGAGGTGGGTGCTGTCTTGCAGCAATT-TTTTTCTTGTTGTACCAAATTTTCCTGTTGTATCACAGGGCTTTTGGGATTTTAAGGGATTACCTTGAATCTCTACATGGGAGAGTTTCTATAATCAGAGGGAGCATTCTGGGTTGACCTGAGCAAAGGCTGCAGCACAGAAAGTTTATGAACTGCTCTTCTACCCTCTCTTGCTgggctgctgtgtacagtggaccaggttgtgcagcctctatgatgactatgaaatgaatggcagcttcccccc--------aagttgaggaatgcataacctcactaccatctgtggtaacccCTCTCCTAGGGGTCTTGGGTGTCCCTGAGTTTTCGTCTGGGGGTAGAGAGA---GAAGCAT-CTGTGGTAACTTACGCCAATTGGCCTGAAGCTGTCCTTACTCTGGAGGGGGCATTCCTAGTGGGTTCAGGACTAGTTCCCTGTTTTCCCCACCCAAGGCCCCATCCAGCTGATACCTGGCGGGCAGAGGCAGTGGAAGGTGGCAAGTAGGTCCAGACAGGTGCTTCCTGGGTGGCAGGGCTGGGAGAGGCACTCATTGTGATCAGCCTCACAACGGGAGCCTGTGTAGCCAGGTGGACAGAGGCAGTTGAAGGAGCCAGGAGTGTTGAGGCAGGAACCGCCATGTTCACAGGGACTTGGGCCTTGCTGGGCTGGGAGGAGAGAAGAGCTGGGAGTCCACAGGGGTCAGGGCAGGAAGGGCAAGGAGGTGAGACTGTCAGGGAAGGTGTGGGGGCCTGCGTGTGGCAGACGAGACCAAATTGGGGAAGGGGCTTGTGTCTTTAAGATGGAAAGGAAATAAGGGACCAAACTCATGGGGACTGAGGGGCTGAACATTGGAGAGAGGGTCATGTAGGCAAGAGATGCCAAATCTGGGCAAATTCAAGGAAAAAGATGTTTGGTTTTTTAATTGGAAAAGCAATCTGCCCTTTTCTGTCTTCAGTGCAGAGGCCTGTCTGAGG--CTCAGAGAGGCTCTGAAGTGGGAGTGGCCTCACCCATCAGACACTCGTCCAGGTCCTGGTGGCAGGTGGGCCCCGAATAGCCAGGCTGACACAGGCAGAGTGTGGAGCCTGTGAGGGGGTTGGTGCTGCATTGGGCATCCCCATGGCACGGCTGGCTCAGACACATGTCTTCCAAGTGGCACAGGAGTCCTGGAGGGGTAAGAGGGGGTGAGGCTCTCAAAGGCCACTTGAAGCT--CCTAGCAGTCCTCCTGGTGCTTCTCTCACCCTCCTTCTCTACCTCCCACCTCCTGATACCCTCTACCCCCATACCTGTGCGTCCAGGTGGGCAGAGGCAGGAGAAAGAGCCCACCCGGTCAATGCAGGTGGATCCCGGGGCACAGGTGGCAGCAATACAGTCATCCAGGTTCTCCTCACAGCTTGTGCCGCCCCAGCCACTCACACACACGCAGTGAAAGCTACCAGCAGAGTTCTGGCAGGTGCCCCCGTTTCTGCAGTGAGGGGGACCCTGGGTCTCACACTCATCCACATCTTCGGAGCAGTCCCAGCCTGCAGGGGGT----TGGGGAGGGGACGAGGGCTAAGGCTGGGAGCCCTATGAGTAGGGGAGGCCAGGGGCCAACTCTCTGGGCCATGGGTGTCATGGATGTGGCTTAAACAACTCACCTGTCCAGGTTTCTGGGCAGAGGCAGGTGTAGGTGTCCAGCCCATCCTGGCAAGTGCCCCCATTCTGACACTGGTGGCTGACACAGTTGTCTGGATTCACCTCACAGTCTGGGCCTATGAAACCTGACAGGGTCATG-GATCAGCTGTGGGAGGAGGCTCCAACGGAGACATCCTGCCCTGCCCAGAGAGAGGGGCGGCCGGAGAGCCCCTGTGAGGACACACCTGGGGGACAGAGGCAGAGGTGAAAGGTGGAGTCTTTCTCTGGCATCAGCTGGCAGGTGCCCCCATTCGAACAGCCCCTAGGAGGGCAGGGTCCTGCCCGCAGCTCACAACGTGGACCCTCCTGCCCCACAGGGCAGAGGCACTGGAAGGAGCCCAGGGTGTTATGGCAGGAGGTGCCTTTGGGGCAGGGTCCTGGGTCCTGGAAGCACTCGTTGACATCACGTTCACAGGCATGGCCCTCGAAGCCCGGTGGGCAGTGGCACTGGATCTGGGGGTATGTGGCCAGACACACCCCTCCATTAACACATGGGTTGGCTGAACAGAAGTCCCGAAGCTGGCACTGCTCACCTGAGGCAGAGGACAGAGGGAGCCGTTTCTAGCATTGTACGAATTCTAGCCCATCTGAGGTTACCCAGTGCTCACTCTGGATTATCTCTGGGTCTCATTTTCATATTTCCTTCCCTTTATTACCATACTTTCTTTGCTCTGTTCCATCACCCCTGCTCTGAGCGATGTCATGGCTTGGGAGGGTTTATCTGGAG---TGACCATATCTTCTAAAGTGATGATGAGAGTATTGCAAATTGGCCTTGCCTGAGAAAATCTGGGAC------GTGGGTGATCTT-------GGGGGAGgtgaaaagcaccccacgtctgcaggcaggagactcaggtggcaccatgctgtgccacaactggttgtatacccttgggtgagccactttgcctttctgatcctcatttcctaatctttaagtgggTTTAGGCACCT------------GGAGACTCACTTCACAGTCCATGTGCACCAGTGGTAATGGCGGCAGCAGTGGAGgtgccaggtgctgagctgagcaagcatctcctgagcatcggccccttctgtcctctcagcaaccttatgaagtgtgaccattactctccctgtttgtcagctgacaactgaacac-cagaaagctaaaatatcttatatgaggtcatgtagctgatcagtggcagagctagcatttggatccaggggctggtgcagagcccctagaa s canFam2.chr12 4606169 2775 + 75515492 TAGCTTGGAGGTAGGTGCAGCCTTGTGGCATTTATTTTTCCTCTTGCACCAAATT--------GAAGCATATAGGCTTTGGGATTTTAAGGGTCTAC--TCAATTACTACAGGGGAGAGTTCCTCTGATTAGGAGGGACATTCTGAGTTGGCATGAGCAGAGGCTGC--------------------TGCTGTGCTGCCCTTTCTCGACCACCTTCTGTCTACAGCGGACCAGGCTGTGCA--CTTTACT-tgaccatgaaatgaatg----cttccccctcacccccagacttgagcagtgcacaagctcattatcatctgtggcagccctTCTCCTAGGAACCATAGGTTTCCTGGAGATTTTATCTGGGG-CAGGGAGATGAGAAGCATTCTTTGGTAACTGACCCCAACTGGTCTGGGGCCGTTTGTGTTCTGCAGGGGTCATGTCTCGTGGGTTCAGGATGAGTCCCCTGTGTCCTCTACCCAAGGCCCCCTGCATCTAGTACCTGGTGGGCAGAGACAGTGGAAGGTGGCGAGTAGGTCCAGGCAGGTGCTGCCGGGGTGGCAGGGCTGGGACAGGCACTCATTGTGATCAGCCTCACAGCGGGAGCCCGTGTAGCCAGGGGGACAGAGGCAGTTGAAGGAGCCGGGGGTGTTGAGGCAAGAGCCGCCGTGTTCACAGGGACTGGGGCCTTGCTGGGCTGGGAGGAGAGAAGAGTCAGGAATCCACAGGAGCCCCCAGTGGAAGGGCAAAGAGGTCAGACTGCCAGGGAAGGCATGAGGGCCAGAGTGTGGCAGGGGAGAGCAAATCAGAGAAAGAGCCAGTGTCTTTAAGACAGAGATGAACTAA------------CTGGGACCTGGAGGGCTGAGCACTGCTGTGAAGACCGTGCAGGGAAGAGATGCCAGATCCGGACAAAATCA-GAAGAGAGATGGTTATATTTTTTGTTTGAAAGACAATTTGC-------------------AGAGGC-TGCTTGGGGGGCTCAGAGAGGATCTGATGCGGGGATG-CCTCACCCATCTGACACTCATCCAGGTCCTGGTGGCAGGTGGGCCCTGAGTAGCCAGGTTGACAAAGGCAGAGTGTGGAGCCTGTCAGGGGGTTGGTGCTGCACTGGGCTTCCCCGTGGCACGGCTGGCTCAGGCACATGTCCTCCATGTGGCACAGGAGTCCTGGAGGGCAGGGTGGGCGTGAGGCTCTCGG-GGCCGC----AGCTGCCCCAGCTGCCCTGCTGGTGCCTCTCGCGCTCGTCATCTCTACCGCCAACTCCC--ACGCCCTCTGGC---ACACCTGTGCGGCCAGGTGGGCAGAGGCAGGAGAAGGAGCCCACGCGGTCAATGCAGGTGGATCCTGGGGCACAGGTGGCAGCAGCACAGTCATCCAGGTTCTCTTCACAGCCTGTGCCTCCCCAGCCACTCACACACACGCAATGGAAGCTGCCAGCCGAGTTCTGGCAGGTACCCCCGTTTCTGCAGTGAAGGGGACCCTGGGTCTCACATTCGTCCACATCTTCAGAGCAGTCCCAACCTGCGGGGGGCAGGGTAGGAAGGGGACAAAGGCTGGAGCTGGGAGTCCTGTGAGGAGGGGAGGCC-GGGGCTGACCATCTGGGCCGCAGGTGCCATGGGCCTGGCTTGCACGACTCACCTGTCCAGGCCTCTGGGCAGCGGCAGGTGTAGGTGCTCAGCCCATCCTGGCAAGTGCCCCCATTCTGACACTCGTGCCCAGCACAGTCATCTGGGTTCACCTCACAGCCTAGGCCTGTGAGACCTGATGGGGTCATGAGATTAGCTGAGGGAAGGGAACCT---------------CCCTACCCAGAGAGAGAGGCTGCAGG----------TGAGGACACACCTTGGGGGCAGAGGCAGAGATGGAAAGTGGAATCTCTCCCTGGAACCAGCTGACAGGTGCCCCCATTGGGACAGCCACTAGGGGGGCAGGGTCCTGGCTGAAGCTCACAGTGCGGACCCTCCCGCCCAGTAGGGCAGTGACACCAGAAAGATCCCAGGGTGTTATGGCAGGAAGTGCCCTTGGGGCAGGGTCCCGGGTCCAGGAAACACTCGTTGATATCGTGTTCGCAGGCATGGCCCTCGAAGCCAGGTGGGCAGAGGCACTGGATCTGGGGGTGTGTGGCCAGACACACTCCTCCATTGATGCAGGGGTTGGCTGAGCAGAAGTCCTGAAGCTGGCACTGCTCACCTGAGGCAGAGGGCAGAGGGGGCTGCCTGTAGTTCTGCACAAAACCCAGCTCATCTGAGATAACTCAGCTCTCACTCTGGATTATCTCTGTGTCTGATTTTCATGTTTCCTTCCATTTCCTCCCATACCTGCCTTGCCCTGCTTCACCACCCCTCGCCTCGGATTTGCCAT----------------TCTGGAAAATAGAACGTGTCGT------TGATGGTGGGGATATGGCAGATTGGCCCTACCTGAGCAAATCTGGGTCCTTCTAGTGGG-GACCTTTCCTTGGTGGGGAGGTGAAAAGCACCCGGCCACTGCAGGCAGGAGACT----TAGCAC--TGCTGTGCCACAA--GGCTCTGCACCCTCAGACG-GTTGTCTGGCCTCTCTTGTCTGGGTTCCCTAATCTTTAGGTGGCTACAGGGTTCCAGATAGTGATAAGGAGCCGCACCTCTCAG-CCGTTTGCACCAGTGGCAATGGCG------GTGGTGGCCCCTGGCACTGAGCTATGTCAGTGCCTCCTGAGCATCGCTCTCTTTCCTCCTCTCAATGACCTTATGAAGTGTGGACA----------------TCAGCTGACAACCAAGGACGTAGAGAGTTA---------GTGCAAGGGCACAGGTCTCATCCATGGT-GAGCTGGCACCCAGACCTGGGGA-------AGGGCTCCCAGAA a score=121682 s hg19.chr6_ssto_hap7 3537518 2755 + 4928567 ctTGCCCCAGGGTTACACCCCTCCTCCTGGGGC-GGCCCCCAATCCACTCTCTGGGTCACA-TCCTTCCCTTCCCGGTGCCCCTCCCACCACTGCAGTCTTCCCAGGTGATATAATGG-CTCCCTCCACTCAGAATGGGAGCCATTCAGATGCTCAGAATGCAAAAGTCTGGAGGACCCCT-----------------GGTATGCAGAGCAATGACCCTCTTCTAGCTGCTAGGCAATGGGGAGATTAAAGGGGCTAGG---ACAGGCATCAGGATGGTGCACAAAGGGGGCTCATGGCA-----CCCTTA-------ATTTGGAAATATTTTAACATTTTAGCAATCAGTACAACCATGCTGGTGAATGTTGGTTGTGGGTAAGTGGATTGCCAAGAATTGGCATGTTGATTCTCATGGCTTCTGTCTTCA-AAGGGCTTGCAGTTTCTCAGGCTCCAGTTCTATCTTCCCCACCCACAGCCTAGCCCATTGCTCCTGCCTGTCCCCTCCTG----GCTGCCCCCAGCAGCGCTTACCTGTCCATCCAGGCATGCAGGAGCACTGTGGGCGGCCCGAGGCCTGGATGTGGCAGCGGCCCCTTTTGGAACAGAAGGAGGGAGGACAAGGGTCTTCAAGCTTGGCCTGGCATCTCTCACCAGTGAAGCCAGGGAGGCAAGTGCACAAGAAGCTGGGTGTCAATGGAGAGGGAGAGCTGGGGAGCCCTAGGGGAGCGGGAAGCAGGGCTTGGCAGCTGCCTCCATTTTGGCAGAGCTGGGCGTTCTGGCAGGGGTCAGGAAACTGGCACGTCTCACCCAGGAAGCCAGGGGCACACCTGGGCAGGGGAG--GAGAGGAAAACTCACATCACTGGtccctcttcctattcttgcccactccctcctctgccttcatttgtttcccttcatctccttcacttcctctctttcttctttggtctcacttcctcacctctccccccctgctctccctccccctttctctccagtctcccactccTGCAAGGCACACTCACTGGCAGGTCCCTTGTCCCAGAGACAGGCTCAGGCAGGTGCCTCCATTGGCACAGGGTTCTGGGAAACTCCCACACAGCAGCCCTGAGGGTGGAGAGGCAGGCGCAATGGAAGCCCTGG---GTGCTGTGCCTCCACCTTTCCTCTTCTAGGTGCTCCTGAGAGACCTGCCCACAGCAGCTCCCACAGGTACTCTAAACCACCTCTTCTTCACATCTGTCCCCACTCTCCACATGGTAC-CCAGCCCCAG---------CCCCAGTGCCCTCCGTCCCA------------------------GTTACTAATCCCTACCCCCCTTTCCTGTTTATTCTCT---------------GGCCTCCCAAGTCCAGCCTCGGACTCCATCTCTCGGAAGCAA-GACAACAGGGGTCAGAAGAGGGGCGGAGGTGGCTCCCGGGAGGTGAATGGCTGAGACTTCGAAGAGATTTCCTCCCGGAAAGGCCGAGCATTGAGCCATCCGGGGGGTGGGGACAGCTGGACTAAGAAAGGG-------CTTAGTAGGCCTGACCTT-TCATGTCCCCATCTCCTGCTTCCCTCTCATCTCCTCCCCAAGCAGGTGGTCAGTGTGTTCCCTCTTCCCCTCTTCCCTATGGCTGCAAGAGTCCTCCAGTGCCAGTGCTGACGAGGTTCTTCCTGGAGGTGGGCACCCTCTCACCCATCCCCCAG-CAGTCACCACCCCTGGCACCAGGCCCGAA----------GCAGCTCCATGGGCAGAGCCGTCTTTCCCTGGAGGCCGTCTCTATTTGGGCA-----GTGAGAATCTCCTCCATCCAGCATCCCTCACACGGCCTGGGGCTTGGCCCTCTTCCCCCACCCCACTGATCATCCTCCTAAGGGAGCTGGGTCCCCTCACCTCACCCACGCCA-TGCCTCACCTCTGGGTCTGACCACTGAGACACATagcagcagcagcagcagcagcagcagcagcagTGAAGGGGGCTGCATTCCACAGCCCCTTCTCCAAGCCCCGGTCCCTGTC--CCTCTTCAGGCAGGGACCCTCAGAGCTCTCACTGGGGCAGGAGCCACCTCCTCTGCTCCCACTGCCCCTCTTCTTCCTCCTCGGCCTGCTGCAAGCCTCACGTCTGAGCTGTTTCCTGAGTCACACAATGTCCTGGACACCCTAGTAATGGGGGGCGGAGGAAGAGTGGAGGAACACTAGGGGGGATGAAGGAGGGGCCTTCTGTCCCTGACAACCCCTGGGGAAGTAGGGGGAAGTAGGACGGTGTGCCTGGAGGGCAGGTGATAGGAGGGGAGAAGGAATCTCGGAAC------CCCCTGGG--CAGTCCCAGCCCTGCTGTTTGTTGATCTGGTCTCTCCTTTCTAGGGATGAGAATTGCAAGGTGGCTGCCCTGTGCCCCAGGAGGGGCAGGACCTGGAAAC--AGGTATTGGGTGGTTACAGAGTTCTGTATTCCTCCTCCCAGGAGAGGATGCTTAATTTGCCAGGTTATTACAGATGCTTCTCAGAGAACCTGCAACTTGTCATAATTTGAAACCACTCACCTTGGCTAAAGGAACCCAGGG-GCTTCTGGGCCTTATCTTGGCTCTTGCCAGG-ACTTATTTTTCTCCTTCTGGCAAATGGGCAAGATGCT-GGCCGGTTTT-GGGGAAATCTTGGTCTTCCTGTTGTAGGGGAATGTTAAGACTGTCATTATCAGTGATAAATGAACATAGTCTACCCTAAATTTTGCAGTCTGAATTGTCTGTAACAAACACTGAATTTGGGTAGTTTTCACTTCCTCCATCTCTGCCTCCCTCCGCTGTCAAGGTCCTTGGGATGCAGGGAATGCCAG s canFam2.chr12 4609358 2707 + 75515492 CTTGCCCCAGGGCTGCACCCTTCTTCCCAGGATTGACACCCATTCCTCTCTCTGGGTCAGAGCCCTTCCACCCTCATTACACTTCCCACCAGCACA-TCTATCCAGGTGCTGCTCTGGGCTCCCACTCCTCAGAATAGAGACCATCCAGATGACCATAATGCAGAATCCTGGAGGTTCCCCTCCCCGACCTTGTACTGGGTATG--------TTAACACCCTCTGGCTGCTGGACGG------------AGGGGCCAGGGAAACAGGC--CAGGGTGGTGCACCAAAAGGGGCTATGGCAGGAGACATTTACGGACAAGTTTGGAAAGACTTCAACATTT-AACCATCGGTGCAGCCATGCTGGTGAACGTCAGTCTCAGGTAAATCG-TCAGCAAGAGTCAGCTTCTTGATTCGCACAGCCTCTGTCCTCAGAAGGGCTCCCTGTATCTCAGACTCCAGCTCTATCTTTCCCA-----------GCCAGCTGCTCCTGTCCCCCCCCCCCCACCCCGCTTCCCCC-TCAGTGCTCACCTGTCCATCCAGGCAGGCAGGAGCACTGTGGGCGGCCTGAGGCCTGGATGTGGCAGCGGCCCATTTTGGAACAGAAGGA---AGAACAGGGGTCCTTGAGCAGGGTCTGGCACCTCTGGCCGGTGAAGCCAGAGGGGCAGGTGCAGGAGAAGCTGGGGGCCAAGGGAGAGGGAAGGCCAGGGGAGCCTGGGAGGGCAGGAAGCAGGGCTTGGCAGCTGCCCCCATTCTGGCAGAGCTGGGCATCCTGGCAGGGGTCGGGAAACTGGCAAGTCTCACCCAGGAAGCCAGGTGCACACCTGAGCAGGGGAGGAGAGAGGACAGCTTAC-TCACTGGGccctctttgccttctctcccac-----------------------ctccctcagagcctttacttcctctctttctccttccttcccagtc-----ccccctccaccctgctctccttcccCGT-----TCCAGTCTCCCAGTCCCAGGAGGCACACTCACTGGCAGGTCCCTTGTCCAGGAGATAGGCTCAGGCAGGGGCCTCCATGGGCACAGGGTTTGGGGGGGTCCCCCCCCGGCAGCACTAGGGATGATAATGAGGATGGGATG---GCCCTGGGGAGTACTGGG-CTCCCCATTTCCCCCTCTGGGGGCTCTGGAGGGACCTGCCTGTAGCAGCG-GGACGCGTGCTCTCTCGGACCCCT-----GCCTTTGTTCCTGGTCCCCAAGTGGTGCTCTTGCCCCAGTgccccccccccccgcccccccAATCCCAGGCCCAGGCCTCTAGATCCTCTTCGCTATTAATCCCCA-CCCCCTTTCCTGTTTATCCTCTGGCCTCCCAAGCCCAGGCCTCCCAAGCCCAGCCTCAGACTCCA--TCCCGGAAGCCCTGACAACAGGGCTCAGGAG-GGGGCCCTGGGGACTCCAGGAAGGTGAATGGCTGAGACGTTGAAGGGATTTCCTCCCGGAAGAGCCCAGCATTGAGCCATC--GGGGGTGGGGACAGCTGGACCGGGAAAGGGACTTGGTCCTAGAGCCCTTGACCTTCCCATGTCTCCATCTCTTGCTTTCTTGTCATCGCCTCCCCTAGCAGGTGGTCAGTTTTTTCCCTCTTCACCTCCTAAACGCCATCTCAAGAGCCC-------CCTGTCCCAGCTGGGTTCTCTCTGGGAGCGGGCACCCTCCTAGCCATTCCTCTGACAGTTACCGCCCCTGGCTCAGGCCCCAAAGCCTGTTTGTGCAGCTCCGGTGGCAGAGTCTGCTCTCCCTGCA------------TTGGGCAAGGGGGTGAAACTCTCCTCCATCCAGTGTCCC-CTCAAAGCACCAGGCTTGGCCCTCTGCCCCCAACCCACCGA-CACCCTCTTAAGGAAGGTGGGTCCCCTCA-CTCTCCCACCCCATTGCCTCACCTCTGGTCTTGACAACCGAGTGACA---------------CAGCAACAGCAGCAGCAGAGAAGGGGGCTGCATTCCAGAGCCCCTGCCCCAAACCCAGATCCCCTCCCACCTCCTCAGGAAAGGACTCTCAGAGCCCTCACTGGGGCAGGAGCTACCTCCCCTGCTCCCACAGCCC--CTTCCTCCTCCTCTGCCTGAAGCAAGCCTCACGTCTGAGCTGTTTCCTGAGTCACACAATGTCCTGGACACCCTAGTGATGGGAGGGGGAG---GAGTGGAGGAACATTGAGGGGGATGAGGGAGGGGCCTTCTGTCCCCAACAACCCCTGGGGA---CCGGAGGAATGGGACTGTGTGGTGGTAGGGCAGGTGAGAGGAGGGGAGCACAGGGCTTGGAGTGAGGGGGCTCTGGGTTCAGCCCCAGCCCTTCTGTT-----GTGTGGGCTTCCCTTTCTAGAGATGAGAATAGCAGGGTGGCTGCCTCTTGCCCTGGGATGGTCAGGACCTGGAAACAGAGGTGAGGGGTGCTGAGA------------CATCTTC-----------TGCT-------CCAGGTCCGTATCCAGGCTGCTCGGACAATCTGCGACTTTCTGTACATTGAAATCACTAACCTTGGCAGAGGGAGCCCAGGGTACTTCTGGCCCTTACCTTAGCCCTTGCTGGGAACTTAGTTTTCTTCCTTTGGGGAATGGGGAAGATACTAGGCTGATTCTGGGGGAAATCTTGGCCTGCCT-TTGTTGGGGAACATGTAACC--ACATCATCAATGATAAATGAACATTGTCTGTACTAAAATCTGCAGTCCGGATTACCCACAGAAAACACTACATTTGGATATGTTCCCCTTC-----------CCTCCCTCCACCACAGAGAGCCCTAGGATGCAAGAAATGCCAG a score=22780 s hg19.chr6_ssto_hap7 3540286 627 + 4928567 TTGGAGTCAATAAAATCACAAAAGAGAATTCTTTGCCTCAGAATGCTCATCCTACCTTCTTGAGTCAACCCAGGACAACTTTGGGGTCAACCACACACTGAGTTCCTTTAGTAGCACAGGGAACTGAGAGTCCAGGGTGGCAGAAGGTGTCAGTGGCAGCTGTGCTC--TCCCTGGTGTTGAGGCACTCATGGCTGCTG-CTGGTGCACCTGAGAGCCTTCCCCTACCGGGGAATATACTTCACCAGCACCACTTTCTTCCTTTTTTTAG--Ctttttattttaaaatacttttaatctcatgggaaaggggcaaaaatactaaaaagaattccaggatacccttcactcagattcatccactaatatcatttgaccacatttactttatca-ttatttctctataaatacacatttgtatttttttctgaaccatttgagagtaagttgcatacaagataccc------------tttacccttaaatccatcagtgcaaattttctaagaacaaaacattcttttaca-taatatagtacaattatccaaatcaggaaacttagaccgatgtaatactatgatctaattgacagtccaaattcaggtcctgccaattgccccataatgtccttcatgacaattt s canFam2.chr12 4612442 570 + 75515492 TTGGAGTAAATAAAATGACAAAAGAAAATTCATTGCCTTG----ACTCATCCTACCTTTGTGAGTCAACCCAGGATAGTTTTGGCGTCCGTCACACACTGAGTTCCTCTAGTAGCACTTAAAGCTGAGAGTCT-GGGTGACAGGAGGTGTCATCAAAAGCCATGCATAGCCCCCAGCACTGCAGTGCCCAAGGCTGCAGCCTGGTGTGCCTGGGA--------------------------------------TACCTTCCTTTTTAAAAACCtttttatttggaaataa---caagctcacagaaaaggggcaagaatat-------aattccagggtagttttcattcagaatcaccaataggcatca--tgatcacatttgctttatcatttatttctctacatacagtgttttttttttttttctgaaccatttgagagtaagcagtacacaggatattcttttacttataatttacttataaacacatggatgtgaatatctaaagaacaagaacatgtttaacattaccacagtacaactaccaaaatcaggaaactt-----gatgcaatactataatcta---------ccaaatt-------tgccaattgcctcacaatgtcctttataatatttt a score=5181 s hg19.chr6_ssto_hap7 3540913 119 + 4928567 tttcctttggtctaggatctcatttggcatcctgcattgcatttagctgtcgagtctttttagtttcctttaatatgagtacagtaccttaaatgtactttgcctttcattatattgac s canFam2.chr12 4613245 113 + 75515492 tttttttttttcttgg------ttcaggatcatgccttgcatttagttttcatatcttttcatcatcctttactatgggcacagttccttagactgactttacctttcattatattaac a score=3829 s hg19.chr6_ssto_hap7 3541324 75 + 4928567 gcatttttaagcatacaggacagttgttttgtagactgttcctaaatttgagtatgtctggtgtttatgcatttt s canFam2.chr12 4613358 75 + 75515492 attttttgaggaatgcagatcagcttttttgtagattattcctaaatttaggtatgtctaatgtttcttcagttt a score=4318 s hg19.chr6_ssto_hap7 3541412 114 + 4928567 caGTGTATCACATTAGGAAGCCCGTGAGCCagcatcatttataatggtcacccagtattctact--------------agttcatttaaaccaatttcctattatagca-tgtttaggtgggtctcaat s canFam2.chr12 4614571 129 + 75515492 CAATGCAGCACACCAGAAGACACACGGACTagcatcattcttagtggttgaccagtgccccactgtttggtgaaccctagttcattgaaaccagtttcccattgtgggggcattaaggtggatctcaaa a score=680 s hg19.chr6_ssto_hap7 3541690 33 + 4928567 cttcaatttttaaacatataataaactgagctg s canFam2.chr12 4614700 26 + 75515492 cct-------taaaaatactataagctatgctg a score=11203 s hg19.chr6_ssto_hap7 3542050 279 + 4928567 cggtaaatatccttgaacttacatatttgcatggcta-----attattgccttaggctaaattc-tagaagtgaaacccctgagtgaaagggtgaagacatagacttgttttaaa-gctcttggtctctatgtgttgccaagccattctccagaaagcagtgaggcctttctactcca----gttagtagtgtctgcctgtgtccttactctcgccaaccctccacattagaatcctcgccactttgatagatgaaatggtctctt-----attgctcctttaaactgcacattt s canFam2.chr12 4614726 288 + 75515492 caatgaagattctcgaacatgcatatttgcgtggttgtctaggttatttccttagcctgaattcctagaagtgaaatcactgactcaaagggttaaaggatagagttattttaaaagcttttggtatctaagtgttgctgagccactctccaaaaagCAAACAAG-------ACTGCACTGGGGTGGTAGTATCTGTGCATGTCCTTACTCTAGCCAGCCCTGGGGATCTGAATACTTACTGCTTTGATGGGTGAAATAGTGCCTTGttttattactttttttaattttattttt a score=33380 s hg19.chr6_ssto_hap7 3542329 957 + 4928567 gttgtt--aaat----------------gtcaacattctttttaactgtttaatggctattcgtgtttcctgtccatgcttttgtgagtttcctgtccatgcttttgtcccattgtcctattggtgtcattgtcattttcccatCACCTTCCTTAGTCGAGGAGGCAATTGTGGGTATGG-------GGAAGAGGAACCCTAGTGTAAAA-GTCCCTGCTTTTGT-ACTCTCTGGTTTGCTGAC-------TGGGGATTTGGTGCTGGTGAGTAGTGAAAGGAAAATGGGAAGAGACAACAGGTTTCTCATGGAACCGCGAAGACCTTGGTGGAAAGAA-CTGAACTCACCATTTCTGCAATGTTGACAATCTAACACCATTTGTGGAAAGGGAGGctg----gggcactaggctggagcttgagaaaaaggagaaattgcaacggagacagagaag---tggttaggtggaag-ggaaccagaagtgtggt-gggcagaagctgagtttaaagacagtgt-caggaagCTGC-CTGCCCACTTCTTGCTTTATCCTGCTTAAGGTAAGGCAGTGTGCACCTGCTCAGGCATTATGAGCTATGCTTGGGTCCCAGATACTTTTCCTGGCCTCTAAGACCTTACAGCCCAAAGCAGTATTGATGCTCCCCCAAGAGCTTGTTTCTCCTTCCCAATGGTTTCCCAAGGGTTGATACTGACCAGGGTGGTACCATCATCACTACAGTGAACTGCAGCATGCCAGGGATACAGATAGTTCCCTCTGG---GAAATGACCCTTTTTCCTACAGTATTTCATCAAATAGAGATTCATTTTATTAAAGGGATTTTCTTT---CATTGTATACCCCCTGAGAAGGATAAACCTGTCAGTCATTCACACTTCAGTCATAGGGACTTGTGACCTTAAAAGG--TGAACTCCGAGGTTGGCCCTGATAATGTGTCCAAACACAAAGAAGGCAATAGGCCACTGTAGCCATAGAGATAAGCAA s canFam2.chr12 4615219 895 + 75515492 GTTGTTTTAAATTGTGTTTTGTTGTAGGGCTAACATTATTTTCAGCTGTTTAGTGGCTATTCTTGTTT-------ATTCTTCT-TCAGTTGCCTGTCTGTGTTTCTGTCC--------TGTGTATGTCATTGTCAGTTTCCTATCACCTTTCTTAATTG--GTGGCAACTGTGGGGTTGGAGTCCTGGGCAGAAGAAACCTAGTGTGAAATGTCCCTGCTTTTGCCACCTTCTGGTTTGCTGATGAGTGGGTGGGGGTGAGGT-TTGGTGAGAAGGGGAAGGAAAATAGGAAGGGAGACTAGGCTTCTCATGATACTATGAAGACCTGAGTGGAAAAAAACAAAATTCTCTATTTCTTCCATGTTCCTGACCCTACTCTTTTTGTTGAAAAGGAGGTGGTGGGGGGCACTAG-CTACAGGTTGAGAGAAA--AGAAAATGTAATGGAGACAGGGAAGGAGTGGATGGGTGGAAGCGGAGCCAGGGGCATGATTGGGGAGAAGCTGGGTTTTTAGACAGTGTTCAGCAAGGTACACAGCCCACTTCTTA-TACCTTCTCCCTAAGG-AAGGCCTTATATACCTGCTCAGGTGTTATGAGCTGTGTTTGGATCCCAGACACTCTCCCTGGCCTCCGGGGTCTTATGGTCCAAAAGAGGATCAATGCTTCCCTAATAGCTTGTTTCTCCATCCCA-------------------------------------------------------------------GGAGATACAGAAAATTCTTTCTGGTATAAAATGACCTCATTCTTTACAATATCCCATCATATAGAAGTTTGTTTTACTCAACTGACTTTTTTTTAACATTGTATAT------AGGAGGATAAGCTTGCCAATCATTCGCACTTAAGTCCTGTGGACTTTTGACCTTAAGAGGATCCATCTCTGAGCTGGGCCTTGATAATGTGACCAAACACAGAGAAG-------------------ATAGAAATAAATAC a score=20429 s hg19.chr6_ssto_hap7 3543601 499 + 4928567 GCAAGAGTAATCCACTCTTGGAGATTATTTGTAAATATATGGTTCGGGAGATATGGAGCCcc--tcgttgccccaggcccctccctctctgcctccctgttggttactcttcatctctccaacctcttaccattgtagtgtccatggt-tattccctgggcctcttctagtt-ttctgtctccctaggtgatctcatccagtctcctggctccctaccagattcagataccatctatgaagaccacctttgtgctgatgactctcaagatcata--------------cacttcccggaactccagacttgtacttccaagtac----aagtaccacaaacttaacatgtccagaactgacctgatct-tctcccttaaccttctcttccttcctgatagaattgagttttgcagttctattctttccattgtttaggcccaaatccttgaagatattgctgactcctctctttttctcatactccacatccaaactgtcttaaatcctgtggactctacct s canFam2.chr12 4616114 503 + 75515492 ACAGGAGT--CCCACCCTGAGAGATTACTTGCGAATATATAGTTTAGGAGACTTGGAGACCCTTTTGCTCTCTCAGAC----CTCCCTTTGCTTCCCAGCAGATGActtcttacctcccgaatttcttaccactatagtgtccatggtgcaatctctggaccttttctatttgttacctgtccctaggtagtctcatccagtctcatg--ctccggccagatttaagcatcacctgtgaatat--cctttttgttgataactcccaaatttgtgtttctagattagaccacccccttgaactctaaatgtgtacttccagtgactcatgagtacctcaaactgatcatgtccagaactgaggtgatctgcctctccaaaacttc---tccctcccaatggacttgggctttgca-tcctattctttcagttgttcaggcccaaatccttggagacattactgactcctctc----tcttatactctacatccaatctgtcttaaaacctatttggt-tacct a score=14609 s hg19.chr6_ssto_hap7 3544441 270 + 4928567 tctgagcacttctcatctcttctcatccctattgccaatatcctagtccaagcctatgtcatctcttgcatctcctaacttgtcttcctgctgctgtccttgctctccttgtccatatctctacacagcagccaaagtgagtcagttgaaatacaagttagaccacctcactcctctgctcaaaagtctccaatcgcttctccactcactcagagtaaagctaactttcctacagggcctgcaaggc--tctgcacaaggcctttccctctc s canFam2.chr12 4616617 269 + 75515492 tctgaccacttctcatttcttttcatccccactgttaacattctagcccaagctaccatcatctcttgcatctcctaacttct-tccttgctgctgtcattgctc-ccttggcaatttgtctatgcagtggccacagtgagtt-gttaaaatacgagtcagaccatgtcactgctctgctcaaaactccccaattacttctgcacttactcagagtaaagctaaatttcttaccgggcaggcaaggccttatgtattggcctcctccctgtc a score=7674 s hg19.chr6_ssto_hap7 3545014 187 + 4928567 cagccaaggcccttccctctctaacctcatctttgatta------cttctcaccatccagccccattagcttcct-gctgttcttgaaacaggcacattcacaccttagagc-------cttgttctt-ctcactgcctgaactgcttccttccccagctgtcttcgtggctctgtccctcatctcaaaaggcacctaatca s canFam2.chr12 4616886 199 + 75515492 ctgccttg---tttacctctctgacctcatctcctattattacttcttctgcccactgtgccacattggcctcctaaatgttctttcaacaggcacattcacaccttacagcctttgtacttgttcttccccactgcctggactgctttctttcccAGGTATCTGTATGGCTTGCTCCCTAAACTTAAAAGGCCtcttaaca a score=9800 s hg19.chr6_ssto_hap7 3558292 211 + 4928567 ggggctggcgtgggtgaGTGGGTGGGTGCTGGATGAAGAGGGAAGGAGATGGACAGGAGGCACCTGGCGGACTTGGCCAGTGTCAGCTGCCGTCCTAGGAGACTCTGGGCTGGGGC------------GGCATTACTGGTTATCCCTTTCCTGGGGAGGTTGACAATTAA-CCCTGGAAACAGTCTTTAAAATTTTTACTGGACACATATAATTATGGATTGAC s canFam2.chr12 4624820 221 + 75515492 GGGGCTGGTGTGAGGCAGTGAGTGGGTGCTGGATGAGGAATAAGGGAGATGGACAGGGAGACACACAAGTACTTGGCTAGTGTTAGACACTGTTCTAGAAAACCCTATCCTGGAGCTGTGGGAGGTGCAGCATCATGGATTATCCCTTTCCCAGAAAGATTGACAATTAAGCCCTGAAAATAGACTATAA--TTTTTACTG-ACACATATGATCATGGACTGAT a score=31633 s hg19.chr6_ssto_hap7 3558503 1139 + 4928567 AATCTTCCATTTTAAATTTAGAAACTA---------CAGGCAAAAGTTAAAGATATCACAAATGAGTTTTTTATTTTTATTTTTTCATGACAAGGAAATTAGTTGTGTGCTGGGGTCTAGTATGGGGAAAGAATCTATTAAAATATATTTAAAAAGGTAAATCCAAAAATTTATAATTACAAGAGTGAATGACAAGATGATTGTCAATAAAATTAAATAAGCAAAACAACTGCTTGCCCTTTAGAAAATGTAT-------CCAAGCTCCAGGGATCCAAAAtgtttatgaatctgtggatgtctgtgtgtgtgtgtgtgcgtgtatatTTTTTTTTCGTTGTTGTTTCTCTGCCTCTCTCGCCAAACTATATGGAGCCCTGGCTAAGGATAGAGGACTGTCAGATGTGTTTTCAGGGGAATCGC--TGTTTTCTTCACATCAGGGGGAAGTTCTTAGGCAGCTG-------------------------------AAAGCAGGGGCTCAGGTGGGCA----------------------TGGGGGGGTGGGAGGGCTGAGGTTTAGGATGGGAGGGT---GGGT--GAGAGCTAGTAAGGGTGG-GTGGGGCACTGGGG-GTGGGCAGCGGGTACTTGGCTAGGGGTTCAGGACCTGTCTCAGGGCTGCTGTCCAGGG---------GGGTGGAGGAAGGGGTAGTGAAGGGGTCAGAGCACTCAAGATGCGCAGTGTAGGC----AGGGGACAGGCTGCGGTGTGTGAAGAGGGTAGCCTGAGGTGGTGAGACTTGC---TGATCACCCAGCTGGGCTGCCTTGGTCTACTCACAACTGGTCTTCCCTGTGTGTTTGGTAAACACCAAAGGAGGTAAACTCTCCAATCC-TGGCCTGTGCTGATGGTGAGGCGGGAGAAGGCTTCCCTGGGTCCCAGGTCCCCAACCTGGCACAGTCATGGGTCAAGGGCTGCCTGTTCCTCACCTGCCTTCCTCACGGGGCTTCTGAGCCTAGCCTTGCTTCGGGCATT----AGGAGAGTCTGCCTGGAAGGCTCTCTGGCCcccaatgccctgccctccaaggctcccagtctaggtgggagagacatacag-----aacaaataGCATCGTGGGGGTGGTGGGAGGTGGTGTGAACATGTCTCCTGCAAGCTCTGGGAAGAAG--------------------------------------------CTGTGGCCACACAATGGAatgtctccagccctgacctctccttggaactcagacC s canFam2.chr12 4625175 1206 + 75515492 AATCCTTCATTTTAAGTTTGGAAACTATTTCATAAACAGGCCAAAGTTGAAGACAGCACAA-TGAGTTATTTATCTTT------TCCTGACGAGACAA---GCT-CATACTGGGCCCTAATATGAGGAGCAAAATAATTAAAATAT-TAAGGAAATTTAAGTCCAAAAATTTTTATGTGCAAGAACGATGGACAAGA-----------GAAGTAGTAGAAGCAAGACAACTGCTCCACCTTTAGTAAATGTCTACAAGTCCTAAGCCCCAAGGACTCAAAGGGTTTGTGATTCTGT----------------------------ATATTTTCTCCT-------ATTTTTCTTCTTCTT--GCCAAAGTTTACTGAACCCTTGCTAAGGAGAGAGGACTATTGAATATGTTTTCAGGGGAAGGGTAGGGCTTTTTCAGTGGTAGGATGAAGCCCTTAGGCAgtggcctggagtgtggtgggggatttggagtgggaaggggaagtgtctgggtgggcaggggtggaggggtgggggtgagtaggggggtgggaaggctgaaggt-aggatggggagggacagagtTAGGGAGGTAGTAGAGATGGAGAGTGATGCTGGGGTGGGAGCAGCAACTACTTGGATGGGGCTTTAGGGCCTGGTCAGAAG--GCTATTTAGGGATGGATTTGGAGGGGAGGCAGACTCAGTGATGATGCAGAAGGTCCCAAGATACATGGTTTAGGGTTAGGGAGGTCAGAGTGCAGTG-------AAGACAGCCAGTGGTGGTGAGGCCAGCAGCTGGCCATCTGCCTGAGCTGCTCTGGGTTACTCACAACCCACCCTCCCTAAGTGTTTGGGACA-------GGAAGTAAATTCCCTGGTCCACGGCCTGTGTTGATGGCAAGCCTGGGAATGACTCTCTTGGGTCCTGGG-CCCCAGCCTGCCATAGTCACGGGGCAAGGGCTGCCCAGCCATGGTCTACCTTCCTCATCGGTTCTCTGGACCTGATCCAGCTTTAGGTGTTGTGCAGTTATGTCTGCACTGAAGAATCTTTGGCCTCCCATGCTGTGCCCT-CGAGTTTCCCAATGTAGGGGGGAGATCCAGACAGTTATTAACAAGTAGAACTGTGCATGTAAAGGGACGTGGTGTGAACACCCCAAGTGGAATCTCTGGG-AGAAGCCAGCTGTTCtccatccccatagctctgaccaccatcaatggtcctgttgccacacaatgg-atgtttccagcccagagctttccttgggctcaagacc a score=3777 s hg19.chr6_ssto_hap7 3559642 74 + 4928567 TTTCTGCCTCTCTCGCCAAACTATACGGAGCACCTGGTAAGGATAGAGGACTGTCGGATGTGTTTTCAGTGGAA s canFam2.chr12 4625461 74 + 75515492 TTTTTCTTCTTCTTGCCAAAGTTTACTGAACCCTTGCTAAGGAGAGAGGACTATTGAATATGTTTTCAGGGGAA a score=6194 s hg19.chr6_ssto_hap7 3560446 342 + 4928567 TCGTTTTGCTATTCTTCAACTTCGCATGTTTGGATTGCTACAGCTTGAGGTCTTTAGTGTCTGGTTTCCTTCGCTCCCTTCCACGGTTCTAAGATTGTTTTCTGCATCCTCCGTACCCCTCCCTCGGTGTCTTCCTGCTGGGAACTGCTCTTTCTGTCTGCCACGTGGTGGCCACAAGGGGGCAGCAGAGGCTGAGGAAAATCTGGTGAGACCAGGTTGGGGGCCTTTTCCCGGGCCCACGAGTTACTCCCCCCCGCCCACGGAGCACCTTCTGTCCGGGCGCCTCCCAGGCCGCTGCTGCTTCTTGGTTCTGCTTCCTTTTCTGAGACCCGCTGCTTTAGA s canFam2.chr12 4630048 293 + 75515492 TGGTTTTGCATGTCCTCTA--------GTCAGGAATCCTGTAGAGGGCGGTCTTTTGGGTCTGGTTTCCTGTGCTCCA-TCCACATTTCTAGAATCCTTGTCTGCACAACGCAT-TCCCTCCCTC--TGACCTCCCCCAGGGAAGCCCTCCTTCAGAGCTGTGCGCGCCAGCCAGGCGGGGGCGGCAGAGGCCAATAGAA--CCGGGGAGACC--------------CTGCAGGGCCTCAGGGTGACTGTCCCCT-----CACAGCACTCCCTAG-TGGTAGCCTCCCAGGCTGCTGCTTCAGGGTGGTC---------------AGACCCGCGGCTCTAGA a score=26594 s hg19.chr6_ssto_hap7 3561008 664 + 4928567 GAGGACCCCTAGGGCTGGTGCCCCTAATCTGGTGGCCCCCTGTTTAGAGCTCAACTgagctttgatgtagacctggcccctgttagggtttggccacacgacc-tgtgaccctgggcaggtttcctcagatcatcgaggctctgtctctcagctgtaaagtgaggacagtaaggaccatctcatggtattaagctaaaacattcacggaaataa-atatgtaatgctcagagtaagatgccacctagtgaacagtgggcctgagtatttggtggTGGTCATTAGAGAGCAGAGGCGCTGGCCTCAGGGTT-CAGCCCACAGTTCTG--------CCTGTGGAGAGGAGACTCAGTGACAAGAGAGAAAAAAGTGTCCGGCATCCTGGGGACTG--AGAATCTGCCTCTCAGGGTTGGACAGGGCAGGGCCTCTTCTGCCTCCAGCACCCCAGGCCTCTCTCCTCTGATTCTATCAGGGACGGAGGCCAAGGTTGGAGACCCCTAGGCCTTTTCACCTAACTTGGTTTTCAAATTCCTCCCACTAGGACTTGCCTGTTTCAGCCTTAACCATGGTTGGGCCTGACCTACACGGGATTGAGAGGGTCAGTAAATTCGTCCCCACCACTGACTGGGTCACCTACCTG-----------GGCAGTACACATGC-TGCTCTCGGCAACTGTTTC s canFam2.chr12 4630341 660 + 75515492 GAGGATTTCT-GGGCCCATGCCCCCAGTTTGGTG-CCATCTCAttagagcctggctgagctctggggtggacctggctcctgt-agggtttggccacaccaccatatgaccctgggcaggtgcccttctcttgttcagcttctgtctgtcaactttaagatgagga----aaggctttcctctgaggattttg-taaatcatttactgaaataatgtaCCCCATGTTTAGAGTGAAGTGGCCCTTGGTAAATGGTGGGCCTGAGTATTTGGTGAAGGTCAGCAGAGAGCAGGGGC-CTGGCCTCAGGATTTCAGCATACAGCTCAGGAGGCAAGTCTGAGGAGACAAGTCTCCCTGACATGGAGGAACAGGGTGTGGGGCACCCTGGAGACTGTTAGAATCAGCCTTTCAGGGTTGG-----TCAGGGCCTCTCCTGCCTTTTATGCCCCAGGCCTCTCTCCTCTTATTCTTTCATGGTCAGAGGCCAAAATGCCAGGCCTCCAGCCCCTTCCTCATAACTTGGCACTCACATCCCTCCCACCAGGACTTGTCTGCTTTACCCTTGACCACAGATGGGCCTGACCTGCATGGGATTGGGAG----AATAAGTTTTTCCC-----------GGGTCACTTAGCCAGTTGCCCAGGTGACAGTACATGCACTTGCTCCCTGCAAATCATTC a score=38798 s hg19.chr6_ssto_hap7 3589559 562 + 4928567 CTCTGAATCAGGGTTTTTCTA-AAGAAATCTTTCAGAATCAGCAAAAGTGGGGATGACCCAGGCATCTTGATTTGCAAAGTCA------CAAAACTAAGTTGTCAATTATCACTGTAGATGAGCAACTCATCTTTTTAAAGTATAGTTACTGAACTGATTCTGAGAAATCTTTAGAGAGAAAAAA-CTCAACAGTACAAATTAACTAATTGGGAAAGTTAGAATGTCCTTTCTGAATTTTTCATT--AAAAAATTACATTATCTGAAATAACATACAGCTACTAAACTGCTTTGTATTCTATTAAGAAATAGCTCCTAAAGATGTAGTCTTGTTTCATAGTTGT----------------------------AAGCCCAATTCTTCTCTGTATAGAAAGGAAACATTGTGTACTTAATGAATT-ATTTATACAGAGCATTTGTTGCCAACTGTTGTTCCAGCTATCTACACAGGAGTCTGTTCTGAGGTGGCAATAGCACATGGGAAGATGAACTTTCCCTGTTTGTTTACCCGTTTTTCTTTGGCTGTATCTGATGACAGTATAAGATGTTCTTAATAAAGTTTTATGTTCTTTTTGAAA s canFam2.chr7 57167857 593 + 83999179 CTCTGAATCAGGGTTTTTCTATAAGAATTCTTTCAGAATCAGCAAAAGCTTGGATGACCTGGTTATCTTGATTTGCAGAATTAAAAGAACAAAACTAGGTTGTCAGTTGTCACTGTAGATGAGCAGATTCTCTATT-AGAGTATAGTTATTGAACTGGCTCTGAGAAATCTTTAGAAAGAAAAAAATTCAAAAGTACAAATTAA----TTGGGAAAGTTAGAATGTCCTTTCTGAATTTTCCATTCTAAAAATTTGTATTATATGAAATAACATAAAGCTACAAAACTGCTTTGTATTCTATTAAGAAATAGCTCCTAAAGATGTAGTCTTGTTTCATAGTTGTTGCACTATATCAAAGCTTTTTAAAGTGTAAACCCAGTTCTTCTCTGTATAGAAAGGGAGCATTGTGT---TACTGAATTTATTTATACAGAGCATTTGTTGCCATCTGTAATTCCAGCCATTCGCACACGAGTCTGTTCTGAGGTGGCAATAGCACATGGGAAGATGAAGTTTCCCTGTTTATTTACCCCTTTTTCTTTGGCTGTATCTGATGATAATATAAGATGTTCTTAATAAAGTTTTATGTTGTTTTTGAAA a score=16288 s hg19.chr6_ssto_hap7 3600919 587 + 4928567 taaagttcatgtggtggaacatat-tccaaaagagccaagaaaacaa-agaacaaa--gagcagaatgagacatgcttaatagatactcaaactttctatataccctgtataatcaaagcagtatga----------------------------------------------tatgacgtttttatcctaattgcctcactttacaaaattgtaatattaccaatatactgtatatctgcttgtgtattttat---tgt-ctatatatctgcttatgtactttatacataagctgataagcaacttcagcaaagtcttaggatacTGAACATCTGTGATTTATACCTGAAAAGAATAAATCgcaataaatcattggatttcttgatccacccagaactcgtttttgacccttggagggcaatgtggcccctgttgagaatgcatgatttaggggaaaaagaataattgattctacaaatgctactgatataatttgatatctgtcaagaaggaaaaaaagtgaaacctctgtt-cacaccataaacaaaatggattaaatatttaattgaagagaaatagaaaataaaaattataaaagagaaAAAAATTAAGTGACTATAAATATGTGTACCATAGTAGT s canFam2.chr12 4827057 548 + 75515492 TATAGTTTACATGGCATAATGTATGTCCAAAAGAGCCAAGGAAACAATAAGACAAGAGGAGTAGATCAGGATATGCCTAATAGACATTCAGACTTTCC-TACAGCTTGTGTAATCAAAGCAGTATGACACTGACATCGTTTTTTTTTTTTTACTATGACCTCATAAGATTTCTTAAGATGTTTTTATTCTAATCATCTC-CTTTGTAAGATTTCCATATTACAAATATACTATGAATTTGCTTATACATTTCATGAATATATTATACATCTGCCTATGTATTTTAT-----------------------------------------GAATATCTGTAATTTATACATTAATAGAATACA-----------------Attttttgaccc-tcaagaacctatttttgcttcctggagggcatcattactgccattgaaagagtatgattaagtgggaaaagg----tttattttacaaatactgctgaca-aatttgatctccatctggaagagaataagactagacatcaatttcacaccataaacaaaTAGG--------TTTAAT-------AAATATGAAAGAGAAAATTTTTAGGAAAAAAA-------------TGAATATGTGTACCACAGTAGT a score=20335 s hg19.chr6_ssto_hap7 3602179 557 + 4928567 AAAGAGACCCTTTAGAAAGCCCAGAAGTTTCCGAGGATAAGGCAGACATATTTGACTAGATGAAATATATTTTTGTATAGTAAAATGTACCTTCATTTAATCTACttcatgtcagttaacaaatctttgatgagcatctactatgtgcgaggcacttttctaagca-tggagattcagcagtgaacaaagt----------cccttagagtttacattcttgtggggcagaaagtcaataaa------------caaaaataaatatatgatgtcaggtg---ataaatgctggtaataaagatacatcagggcaaagagatagagaatg-gggggtactgttttacttagggtagtcaaatttaagcatatttcttaaaataat-------tgagtagtgcatatgtttgagggggagtgttcaggctgattctgaagcaagaacatgcttggcaggcatgaggagaaatgaggaggccagtgtggctgcatcaatggaagggagatggagagtgggtgatgaggctagaggagaagccagaagctagatactgtaaggccttcaaggccaggataagaactttcatgaa s canFam2.chr12 4827606 541 + 75515492 GAGGAAACCCATTTGAAAGCCTAGAAGCTTTCAGGCTTAAGGCTTACAT--TTGACCAAATGTAATAAATTTTTGTATAGTAAAATATGCCTTTATTT----TATttcatttcagttaacaatttttttt---gcatctactatgtgggagatacttttttaagcactagctattcagcagtgaacaaaatatagtgcttgtcttcagagtttatgttctatgggagcagaaagtcaaaaaaatacatgtgaagtgaaagtgaaaa-ataatgtgaagtagtaataaatgctatgaagaaaaagaaatcaggacaaagggatagagagggtagaaatactgttttagttagggtagtcatattttcgctgacatcttaaagaagtgaggaagtgagttgtgcaaatgttccaggaaga--------------cctgcagtgggaacatgcttggcaggtatggagaacaatgaagccac-agtgtggctgcagcaatg--agggagac----actgggaaatgaggct---ggagaagccagaaactgtgtactatgaggccttgaag----------------tcttgag a score=4243 s hg19.chr6_ssto_hap7 3603044 96 + 4928567 aactttgcaatttttacgctgatggg---ggttggtctttggagagttttgagtagagaagtgacttcatctgatttatattttgaaagcacgattccg s canFam2.chr12 4828147 98 + 75515492 agctttgta-cttttacactaaagtgattggaagacctttggaaagccttgagcagagaagtaatatgatctaatttacattttaaaagtaggattctg a score=11129 s hg19.chr6_ssto_hap7 3603141 281 + 4928567 tgggagtggggagtgggattgggaagctcagtttggaagcaggcacagcaatgcaggtgaggtatggcgatggtttggacttcttgatgaaggagatgagtagtagtcagattcaagatataattttagggtacaggttgatgaattggatgtagagaaagaatgagtagaTTGGGAAAACAT-TTTCAACACAAATGGCAGATAAAAAC--TTAATATGCaaaaac----------acataaaactgagtaagacaaagggcaaaccaccagtttgaaaagcaattaaatcac s canFam2.chr12 4828696 286 + 75515492 tgagagtggggaatgagatcaaga-gctctcttcagaggctatcacagcagtacaggtgacctgtggtgaaggcttggattacctgat-aaggaggtgagaagt-gtcagcttcaggatataattttaggggacaggatgaatgattggatatagagCAACAACAAGCAAATTGAGAAAAAAAATTTGAACACATATGATAGGTGAAAAACATTAATAGACAAAAAGCTTCTACTTGAATTGAAATTGAATAAGA-AAAGGACAAACCACCAGTAT----AGTAAATGAATAAt a score=30901 s hg19.chr6_ssto_hap7 3603505 832 + 4928567 agttagataccacttttctcaatagacaaagattaaaaatagctaccgcttccagcaccagtgcaagtatggggaagataggactctcatatcttcctgtaggaatatgaattattacaaatttggggaaaaggaattaggtaatatctattaacattaaaa----------------------tacacattt-------cttttgatctggcagttctacttctggaaatctatcctagagaaataaaatcctgatcatatatagagatgtgtattgcagtatcatttggca-atggcagaatcatttagccaaaggcaaaaggttggaaacaagctaaat-------------------------gtctatctttaaggaaatggttgaataagcagtaattcattcacactactg-------gatgctgtgctattaaaatg-------ttagattgatgtgttgcccatgatgtattgttaggcaaagaagacaagttgcagaattatgtatatagtttgaccctatttttagaaaaaaaTTCCTACATATACTCATATTTGCATATATTTTTATATAAACATGGATTAAGATGTGGAGAGATTCATAGAAACTTAACACTG---------TGAGTTTTTAATTTTTGAAGAGAGAAACTTAATAAAGATTTGAATAGAAAATTTATTGAGACCTAGCTTACAACGTGTATAATCTGTAGTGTGGCATCTC--AGGTTTGACTTCCCGGTCTTGGCAAGTGCTCAAGCTTCTGGATGATGATAGATAAGAGTGTCTTTATTCCTGAAACACTAAGATTACAGGCTTGTATTTCTTCAAAACCACAATTGGAACTTCTCAAGTAGAGTGTAGGAACACTAGTTGTTTTTTTCCTATTCCTGATTGTTTT s canFam2.chr12 4829106 831 + 75515492 AGTTAGCTACTACACTTCTCATTA--TTATTTTTCTCAGTAGCTGCTGTTTGTAGCACCAGTGAGAGTGTGGGGAAAATAGAGCTCAGACATCCTT-GGTCAGAATGTGAATGGTTAGGGATTTTGGGGAAAGTGATTACATATTTTC-GTTAACATTAAAAATATTTTCATTAGCACTAAAAATATATATTTTCTTTTTCTCttgactttccagtttcacttttggaaatctatcctagagaaataaaatccttaacatgtaccaagatgtttattatagcaccatttggcccatggcaaaa------------------aagctgaaaaacaaacaaagtccattgtttttttttttttttcaaagtccattgttaaagaattggttgaatatacagtaattcatccactctactgtaataataatgct------ttagagtgatgtcctttgacttggagtgatgcatgtgacataatgttaggtgaaaaaatcaagttgcagaatgatgtgtgtagGTTGACTCCATTT--------------------------------GCATATATGTTTATATGAGCATGGATTAAGAT----AGAGATTCATAGGAAGTTAACACTGATAACATCACAAGTTTTTAATTTTTGCAGAGa--aatttaataaagatttaaataaaatattt-ttGAGAACTGGGTTACAATGTATATAATCTGTAGTGTGGTATCTCTTAGATTTTACTTCCTAGCCTTGTCAGATGGTTAAGATTTTGGATGATGATGGATAAG-----------TTCTCAAACACTAGAAAAACAGGCTTCTATTTCTTCAAAACC-TAATTGGGACCCATCAGGTACAGAGTAGCGACATTGGCTGATTCT--CCTATTCTTAATTGTTTT a score=6107 s hg19.chr6_ssto_hap7 3604337 93 + 4928567 TAAGGGGGAGAGTAAAGGAATCTCATCAAATATAAAACTGAATATTTTGATCAATTTTTCAGCTTATTCTTTTATTCCTTTGGATCCTGTTTT s canFam2.chr12 4830137 93 + 75515492 TTAAAACGAGGGTAATGAAATTTCATCCAATGTAAAACTGAATATTCTGATCAATTTTTCAGTTTAACCTTTTATCCCTTTGAATCCTGTTTT a score=4620 s hg19.chr6_ssto_hap7 3604442 81 + 4928567 CTTGTCCCCTTTC-TCGGTTCCCTGTATTCACTTCCTTGATATGTCAGTTATAACCTAGGGTGAGAGATATTTAGGGGAAAA s canFam2.chr12 4830419 82 + 75515492 CTTTTCCTTTTTCACCAGTTCCCTGTATTCATTTCTTAGATATGCTAGTTATAACCTGGGGCAGGAGATATTTGTGAGCAAA a score=11003 s hg19.chr6_ssto_hap7 3604833 187 + 4928567 AGGAAATTGCATTTTTAATGCACTACTAACTCAGGGAGTCTTTAATTGGGATAGGAGCCGCATTAACTGATTTTACATAAATTGTTTGTTTCCTAATATTTTG-TGTTTCTCATTCAGCTTCATTATCTCTAAACTCACCTTTCTGCTTTTCTTTCC------TATGTTCTGCTCCTAAATGAAAAATGACTAA s canFam2.chr12 4830501 194 + 75515492 GGTAAATTGCACTTTTAATGCAGTTCTAACCTAGGAAATCTTTAATTGGGGTAAGAGCCGCATTATCTGATTTTACATAAATTGTTTACTTCCCAATATCTTGGCATTTCCTATTTAGCTTTGTTATCTTAAAACTCAATTTCCTGCTTTTCCTTACATATGTTATGCTCTTTTCCTACACATAAAATGACTAA a score=15869 s hg19.chr6_ssto_hap7 3605043 323 + 4928567 TTGTGAACAGGACATTTGACATTTGTATTAGTTGATTTGCAAAACAAAATTTACTATTGATTTCTTAAGGTAAGTTTCACATTCCTGCTTTTATATTGCCACTATCTTAGAA--GTATATATTTATGTATTTTCTTAAAATTTTCATCATTTTGTTAAACATGGTGTCATTTTGATAGCTTGTCCTTTCTCCCTTCCTTTGTTTGGGGTCCTTTAAGATTTCCACATGTGTATCTTTACAGGAGGGTTAACAATTGCTTTAAATTTGTCAGTTTTTCAGTGGCCTTTAGAAAATGGTCCACAGAATTTTTATAGTTGGAGTATTC s canFam2.chr12 4830971 318 + 75515492 TTGTGAACAGGG-ATTTGACATGTATATTAGCGTATTTGTGAAACAAAATTTACCACTTAATTTTT----TAAGTCCTACTTTACTATCTTTATATCTAAATTATCTTGGAATTGCATGTACTTATTCATTTTCCTAGTATTTGCATCATTTTGCTAAGCATGGTGTTATTTTGATAGCTTACTCCTTTCTCCTTCCTTCTTCTAGGGTCCTTTAAAACTTCCATACCTGTATCTGTAAGGGAAGATTAGCAATTGTTTTTAACTGGCCTGCCTTTTGGTGGCCTTTAGAGAATGG--CAAACAATTTTCATAGTTGTAGTTTCC a score=2278 s hg19.chr6_ssto_hap7 3605366 101 + 4928567 TATTGTATGATTTACTTGCCTTCAAAGACCTAGTGGGAGTGCAAATGTTTTGACCCCAAGTT-AGAAGTTATGGAGAAGATACAGGGAGGTTTCTATAGATC s canFam2.chr12 4831516 93 + 75515492 tattatattaCTTATTTGCCTTC-AAGATCTAGCGGAAATGAAAATGTTTGACTTATTTGTTGACAAATTCTGTGGAATATAC--------TTCTTTAACCA a score=67552 s hg19.chr6_ssto_hap7 3607180 1668 + 4928567 ttttttctcaaaactctcatcttccttaattattggaacattccactatacaggttttccttctatcttcctatcccttagttaaatttcttcaatatattacatataacaaactcagtccttggacttctgctttcgttagtcctgtacttcctcctttgaagaactcactc---ttattgcttcaattgttacctgtaCTCATCTAATTCCAGATATCTCTTGAATGACAAATGTTA--TTGCTTATCCCCTTAAAACAATTTGTTGTTCCCTCCCTGTCCCCCAAATTAGTTCCTAGTTTGTT----------TGTTACCTAGTTTCAAAAGTTTTGAAACCATTGTTTTTTTCACTTTTCCTTACTCCTATGCAGTCAGTCATCATGAAGTAATGATT-CTTCTTTGA---------------TTTTTTTTCCTATTTATTCTCTTTCCATTACTTA---CTCCAAGTACTTCTTAATTAGATTTACTATCTATGATGTTTCTTTTTCT-ATCTTATTTTTCACAATCACATGATACAACCTTATTTTTAAAATGATACAACCTTATTCATTTCACTCTGTGTCTCAAACATTGTAGAATGCTTCC-AGCTGCCTGAAGAGTAAAATATAAATTCCTGGCTTGTTTT---------TCA-AATCCTTTTATA-TTCTCCTTTTCAAAATTATACCCCAGGATGCCTCCCATGAATCTTCCGTAACAGCAAAATTGCCTACTGCACCTGGAGCATGGCACGACAGCCTTTAACCCTTT-ACCTTTCTTTTACTCTTTGTAATTCACTCAGCATATCAACACCTTATCCATCTGCTGTGACATAT-TGTATACCACTACTCCCTTCCCCATGAAGTTACCACCTCTACTTTCTCATCCCA------TGATGGATTATGTTGTCCATCTAAACTTTTTGTAACTT---AGATTTTACTT--AAAAAATTGCCATGTATACA-----TATATCACTATATATGTtataagctacttgattgcaggagctttgacttgtgtttttctgtacaccccttattgctagaccagtgccttgcaaacattaggcTTGCCATGAGGAGTTACTGGTTGATTGGTTGGAAAGGCTATCATAGA--------CATACTTGTCAAAGGAAATTACTATATATTTCTTTAATTAAAATGTTTTACTTCAGAAAGTATCCAGTCTTTCTTGACGGAATC-ATATACGTCTTAACTTATGAAACAAATATTTGGAAACTGAGGTTTGTGGCTGAGAG-ATTAAAAAGGGTGAAACTTCTGAAGAGCAGAAACTGT---GATATGAAGATGAAAGGGATTTTATAATTGTAATCTGTTTAGGCAATGGCTGGGATATGGTTTGTATCTGGAGTATGGGAATCATAATAATCACTTGTCTT-ATGGGCCTTTAAAAAATTTATCCTTACTCTTC-CACTTTTTTGTTGTACTTCCTTCCTGTATTTGCCTTCGC-CCTTTTCGAGCCTTTTGATTTTTCACCATTGAtttctgattctctctttcctttaactttgtcctttcctttgtcaccttttgtgtttttgtcacctttttcttttttatttggatctttctctgcatctctctccttttctttatcattatttcctttATCCTCAAAACTCTCCTTCTTTTCTTGGGCTTCCTGTCCTTTTAGTACACCTGACTCACTCTTCTTTACTTGGGATTCCAGTGTTTCTG s canFam2.chr12 4831609 1664 + 75515492 TTCTTTCTTTAAATTCTCATCTTTC---GTTATCAGAACATTT-ATTGTACAGATTTTCCTTACATCTTCTCATACCTTAATTTT-TTTCTTTGACCTATTATATCTAACAggctcagttcttggacctgtgcttttgctagctctgtactttcttctttggggaactcatttattctatggcttca---gttatctctaCCGGACGGACTTCAGCTTCCTCTCAAATGACAAGTGTTAGTTTGTTTAACTC-----AGCAATTTGTTATTGCCTCCCTGTCCTACAAGTTAGCTCCCAGTTTGTTATGGATTTTCTGTCACCCAGTTTCAAAAGTTATGAAATAATCATTTTTTTC--TTTTCCCTACTTATATGTAGTCA----TCATGAAGTAGTGATTTCTTCTTTGAAAAAATACCTCATATCTATCCCTTCTATTTAGTCTCTTTCCATCACTTATTACCCCAAACATCTCTTCACTAGATTTACTATCTATGATGTTTCTCCTCCTCAGTCTATTTTGTACAATCACAAGGTTGCAC---ACTTT---AGTAATGCAACCTTATTCACCTAACTCTCCTTCCCAAATACCCTAGAAGGCTTCCCAGTTGCCTGATGAATAAAGTATAAATTCCTAGTTTGTTTTCATATTCCTTCAGAATCTTCTTCTAACTCTCCTTTACAGAATTGTATCC-AGAGTGCTTCTTCTGAGCCTGCTGTAACGATAAAATTGCCTACTTCTCCTAGAGCATGGTGTGGCAGCATTGAATTCTTTTGCCTTTCTTGTACTTTTCCTACCTCACTCAGTGTATCAACATCTTATCCATCTTTCAAGACACATATACCAACCACCATTCCCTTCCCCACGAAGCTGTCCCCTTTATCTTCTTGTTCCAAGAGGCTGCTAACTCATACCATCCATCTAAACT----ACAATTTGACAGATTTTACTTTTAAAAGATTATCCTGTGTACACATATTATATCACTATATGTGTTAAAAGCTATTTTATTGCAGAG--TCAGACATATATTTCTGT----AACCCTAATTGCTAGAACGGTGCCTCATGAACATTGAGCTTAGCATGAGGAGC-ATTGATTGGTTGATTGGTTACACTGTCACTGAGTTAATATCATCATTGCCAAAGGAAATTA---TACATTTCTTTAATCAGAATGTTTTATTTCAGAAAGTATCCAGTCTTTCTTGACTAAGCCCATAAAAGTATCAACTTAGAAAACCAAGAATTAAAAGGTGAGATTTGTGGTTAAGAGGACTAAAAATGGTGAAACATCT--ATAGTAGGCACTCTATAGATGTATAAATTAAAGGGATTTTATAATTATGATCCATTTAG-CAATAACTGGGTTGTGACTTGTATCTGGAGGATGGGAATCAGAAAAATCAGTTGACTTTATGAGCCTTCTTTTATTTTACCCTTACTCTTTTCAtctttttgttgtactttcttcccttacttatctttgctccttagtgaaccttctttttttttactcttgacttctgattctttccttcttttaactttgtacttttctacatcccttttt---ttcatagcatcattttcttctgtatctttcttcttccttgcatct---tcctttcctttgtcttgctttatttGATCCTCAGAATTCTCTTCCTTTACTTGAGATTCCTGA------------------------------ACTTG------CAGTATTTCAG a score=5628 s hg19.chr6_ssto_hap7 3608848 144 + 4928567 GTACACTCACCTCAGTGTTCTTTACTTGGGATTCTGGTCCTTTCAGTACACCTGCCTCACTCTTCTTTTCTTGGACCTCTTGTTCCTTTGGCACATCTGCCTCAGTCTTCTCTACTTGGCCTTCTTGTCCTTTTGGTACCTTCA s canFam2.chr12 4833309 144 + 75515492 GTATTCCATCTTCATTATTTTCTACTTGGTAGTCCTGTCCTTCTGGTATTCCAGCTTCATTACTCTCTACTTGGGACTCTTGTCCTTCTGATATTCCAGCTTCATTATTCTCTACTTGGGACTCCTGTCCTTGTGGTATTCTGG a score=69315 s hg19.chr6_ssto_hap7 3608992 1624 + 4928567 ACTCACTCTTCTCTACCTGGGCTTCCTGTCCTTTCAGTACAACTGACTCCCTCTTCTTTACCTGGGCTTCCTGTCCCTTTGAGACACCAGACTGACTCTTCTTTACTTGGGATTCCTGTCTTCTTGGCACACCCATCTCACTCTTCTCTACCTGGGCTTCCTGTCCTTTCAGTACAACCAACCCACTCTTCGTTACTTGGGCTTCTTGTCCTTTTGGGACACCTGACTCACTCTTCTTTACTTGGGACTCCTGTCCTCTTGGTACATCTGACACACTTTTCTTTATTTGGGCTCCCTGTCCTTGTGGTATACTCATCTCACTGATTTTTAGTTGGGTTTCCTGTCTTTTTGGTATTCCAGCGTCACTGTC---TACCTTGACCTCCATTCCTATTTTGTCTTTCTCTAAATCAGTGCCTTTTCCTTCTCTTTCTGGCTCCTTTATGTGTGCTGATTTCAAGGATTCTACAGAATTCGTAAATATGATGTCATTCTTTAGTGCTTCCTTGTTTTCTTCTCGGCTATTCTGAGACCTTGCAGTGCCTCCACATTTTAGAATCTGGATTTTGGAACAAGGTTTTTTTGCAAGTTCTTCATCCATGTAACCTGTTAATATAACTGAGCATACAACAAAAGGGCGTGATTTAGATATCAAGTATTTTCTCTTTATTTCTATTTTTTTCCCCTTGATACTGGTT--CCTTTTTTGTCTTAAAACTGACAAACTAAAATT--TTTCTGAATCTCAAGTTATCTAAAATGATGGTTCTCTGTACATAAAATTATAAAAGTATCGATAAAATTCTGGACTATTTTCAATAATTTGGAAGATTAATGAGAGAAAAGGTAAAATGTACTGTAAATGAACTGACA---TTTGTTCAGTGGATTATGGCTAATGAATAATGCTTAGTGGCTAACAGAGGATGTATTCTGAAAAGAAATAGAATTTGTTTTAAGGAAAAATTGTGGGAGGAAGCAATAATTATATTTCTCAAGACAGAAAAAGGAAACTCAAAA-ATGCTTTCCATATTGAATAAAAGCATATCTTATTATGCAAAAGTAATAACagtactagctgataattattaagtgcttaccacataccaagtactcactgctctaagcactttat-----gtattaaatcatttgatactcacaacaaccaggtaggg---tattattaacctcattttacagatgaagaaactgaggcacagaatgcttaaatgaatatgaataaggttatgtaatcagtaggtggtggagctgggatttgaatctgagtagtcagactccagtgttcagttttgatcattaCTGTAGACTACTTCTTGCAATATCTGCAA----ACTCTGCAAAAATTTCAGGT-CCTTTGATCATGTTCAGGTAAATCAGCTGT--TACGTCTCAATTCCTGTGTGATTTAACAAACCTGAATTTATTGGCTTCTGCTAGGTATTTTTTATTTGCTTTTGTTTTTTTTAAGTAATATGGTTCCCTGAATTAAGTAAAAGAAATATCTGAGCCACCAAG--GAATTGTGTGGGTTCTTGCCGTGGAGCAGAGGGATGTCTTGCTTTGAGAAAATCTAATATTTAATATTTACTATAGTAGAAAGAATACTGAATATAAAAGCTGAATCA s canFam2.chr12 4833273 1498 + 75515492 ACCCACTTTTCTCTACTTGGTACTCCTGCTCTTGTGGTAT-------TCCATCTTCATTA--------------------------------------TTTTCTACTTGGTAGTCCTGTCCTTCTGGTATTCCAGCTTCATTACTCTCTAC---------------------------------------------TTGGGACTCTTGTCCTTCTGATATTCCAGCTTCATTATTCTCTACTTGGGACTCCTGTCCTTGTGGTATTCTGGACTCTCTCCTCTTTACTTGGGTTTCCTCTCCTTTTGGTATTCCCATGTCACTCATTTTTACTTGGTCTTCCTCTCTT---AGTATCCTGGTCTCACTCTCCTTTTCTATGATCTCCATTCCTATCCTTCCATTCTCCAACTCAATGCCTTTTGTTTTCCATTTTGACTCTGTTTTGTGCCTTGATGTCAAGGATTCATCAGAATCTATGACTAAAATTTCCTTCTTTAGTGTTTTCTTGTTTTCTTCTTGGCTGCTCTCAGACTTTGTAGTGGCTCCATTTTTTAGAATCTGGGCCTTGAAATCTGATTTTTTTGCAAGTTCTGCATCCATGCAACCTGGAAATATAACTGAGCACATAACAAAAGTGCACAATTCAGATATCAAGTACTTTCTCTTTATTGCTA--CTTTTCCCCCTGATATTGGTTTATTTTTTTTGTCTTAAAACTGAAAAACTGAAGATAGCTTGAGATTTCCTGAAAATATAAAATGATGGAACTCTACAC-TTAAATTATACAAGTATTGATAATATTCCAGATTCTCTTTAATAAATTGGAAGATTAATGAAAGAAGAGGTAAAATGAACTATAAATGAACTGGCCGCTTTTGTTCAGTATATTATGGCTGATAATTAAAGCTTAATAGCTAAAGGAGGATGTGTTCTGAAAAGAAATGGAATTTATTTTTA-GAAAAATTGTGGAAAGAAGTAATAAT--TGTTTCTTAAAATAGAAA----AAACTCAAAATATGCTTTGAGTATTGAATATAAGAATGTCCTCTCAATCAAAAGTAATAATagtactagctggtaattattgggtacttatcatacatcaggcactccctgttctgagcattttatataaaatattaattcacttaattctcacaactaaaagggcaggtactactattattcccattttacagatgaagaaattgag------------taaatgaatgtgaatatggccatggagttattcagtggtggagctgggatttgaaactgg--agtcagacttcagagttcAGT------------------CTGTTCCTTATGATAACGGCAAACTTACTTTACAAAAATTTCTGGTCCCTTTTTCCATGTACAGGTAAGTCAGCTCTACTATGTCTCAACTTCTGTGTGATCTAATAAA-CTGAATTTTTTAGCTTCCAC---------TTTATTTTTTCTTATTTT-----AGTGATTTGGTTTCCTGGATTAAGAAAAAATAATTTAT--GCTACCAGGAAAAATTCTGCGGGTTCTTGCTATGGAGGAGTGGCACACCTTCCTATAAGAAAACCTA--TTTAAATATTtaatggggtagaaagaatactgaatttaaaagctgaatca a score=4209 s hg19.chr6_ssto_hap7 3610944 85 + 4928567 GAAGACCTAGGTTTATTATTCCTGCTAGCTGGGTTTAATGGGTTTATTAAGGTAAATCAGTTAATCCTCAAAGATTCACTGTTTT s canFam2.chr12 4834771 76 + 75515492 gaacacctgggtatagtattcttgctagc---------tgggtttgtttgggaaaatcagttaatccccaaagattcaccttcct a score=17221 s hg19.chr6_ssto_hap7 3611029 371 + 4928567 TATATTTAGTTTGATCTGCTCACTTTGTAGAGTTACTAAATATTGTAGACAAATgttaaagtaacatagcctttggagacagactggttcaaatcctgcctccgcacctgcctagctgggtgacctttggcaaactttactttc-tgtctgtaaaatgggggcaatagtagtagctacctcaaagaggtgttatga-gattaaataatgttatctaaataaaagcacttggtacagtgcatgggacat-----aagtagtcaataaatattggccattactACTTCCCAATGAGATAGTACAGGAAAAAACTCTCTA-ATTCAATCAAGACAAGGCATTCTTAGTTTCCAACAAATAATTTACAGGAGTGGTTAATTGT s canFam2.chr12 4835135 367 + 75515492 TTTATTTTGTTTCCTCTGCCTACTT--TAGAGT---TAAGGATTCTAAGGAAATATttaagaagcatggcttttactaacagactgtttcaaatcctggcttcatacctaaccagccaggtgagtttgggcaaaccttactttcttatttgtaaaatgggtacaatagttgtaggtacttcacagaagtgttatgaggattaaata-----atctaagt-aaagcactcagtatagtgcatggaacatagtaaaattgtccaacaaatattggctattattAC-TACCAATTAGATCATACAGGCAAAAACTCTCTCTGATCTATTAAGACAAGGCATTCTTAGTTCCAACCAAATACTTTAGAGAAATGGTTAATTGC a score=61208 s hg19.chr6_ssto_hap7 3611718 1634 + 4928567 ATTACAGGAAAATTTCTTGCTTAAAAGTGAATTATTGGACTTTTCGTTTTT-----------------TACATTTAGGGTTTGATGTTTGAAAAATTGGCATACACATAACTTCAGAATTTTATCAATTATAAAAATGAGGCACACCTGTATTAGATAAGAAACTAATTATAAATCAAAAGAGTTGTTGTAGTTCAGTGTTTTCTTTTATTATTTTCAGCTGTTGACATCCAAATAAAAATAACATTAGGAAAATTACAGTAATGTTTTCTGAACCTTTTTGTATATGTCCCCACCTAGAGTTCTTCATTAAAATATGGTTACTGACATTTTATTCTAGAC-AATCAATTTTCAGTTTCCTAATGAAAATCAGTGGTAATATATTTCAAGCATTGCTAAATTGAGAAAAATAGTTCAGAATATTTTGATCTTCGACAGTGCTACCAGTGGACACtgttttgttttgttttgtttAGGGGTATG--GTGGTGTGGAATGGTAAGATCATG---CTCCGCTGAAGTTTCTAACCTTAAGAATTTCATGGAATGTACTCCTCACATAAGCTGATtttcctta--agctatgaatatttttagttttactatcccttgggggtaat-tatttgctactgtgtgtaatacttcatgactca-ttttaacctaaatttaccttctaaattatatagg-ctttgtaaaccaaaattaagtattataggatttcctgaaGCACCCAGTGTTTATTCTAGCTACACCTTTCCTAATTTCACAGAATTAAAAAACTTTTTATTCTTTCTCCCACTACACTGAAAAATACCTCTAGTTACTTCTAATAGAATCTTCATACCCTTATTTTAATATATTTGCTGTCATCTTTTAAATCTTGAATTTAATTAACATAGATTAGATTTACAGGATTTATTTTTGAGTAATCTAGCTATCCCATAAAGTGAGGTTCACTTTTATTTCAACTTTGCATTGCAGAAGTAAGCCACAAATCATTATTCCACCACATTCTAAGTTCTT--TTCTTCCTTCTCCCAGATTTCAAGATAGTTCATACATCTTTTCCTTCTCTTGGACCTCATAATCATCTAACACATACAGTGTAAATCTTCATAATATAAAGACTTGGAAGCCCTGGCTGCAAGTACATTTATTGCAGGCAGTAGCCCATACTACAAAATTTTAA-TACAATCAAAAGATTTAATCAAGACTTTGGGGATCATCATAATATATTCAAGCTGaataaaaagtaattattaaaatttttaaattGGATTAATTTTTGTTAAAGCTAAAAGATATCATGAAATAGCTATCACATTAACAATTCTATCTAAATGATACT------TAACATAGAAAATAGAATGTGGGCTTTATTAGGAAACTAATC---TTAGGTTCTTAATCCAGTGGTTGTCAGGGAGAGCACAATTGGATCTAGACTGTAAAAGATCTATTCAGTATCAGAGGGATAAATCATTATAGTTCTCAGGCTATGAATT-ACATTT----TAAAAGATCATATACTTA-TTAGTTGAATGAGGAGGTGAGAAA-TAAGAGACTCAGTTTGCTGGGATGATGATGTTTGTTGGTTTAATCTATCTTAAACCTTTCTTTGAACATTGACTTAAACCTTAACCTCCTTTTTCTAAAAATATCAACTGGg s canFam2.chr12 4835502 1475 + 75515492 TTTACAGGAGGATTTCTTGCTTAAG--------ATTTGACCTTTTTCTTTTCATAGAAAACCTTTTAATATGTTTAGGGTTTGATGTCTGAAATATTGACATACACATAACCAAAAAA------CAAATAGTAAAACGTGACACACCTGCATTAGATAAGAAGGTAAGTATAAATCAAAAGAGATGTTGT-----AGTGTTTCCTTTTTGATATTTTAGGTTCTGACA-CAAAATGAAAATAACACTAAGAATGTTGCAATAATG---------CTTTACTGTGTTTTTTCCTCCCTAATG-------------------TACTGACATTTTATTCTAGACAAAGCCATTTCCAATTTACTAATAAATATCAATAGTAAAATATCCTAAGCATTTTAGTACTTAGAG----AGTTCAGAATATTTTGATATCTAACAGTACTACCAGTAGACAC---------TTGTTTTTTGGGAGGATGTGGTGTGGTGTGGAA----AAGAGCATGTTTTTCCACTGAAGCTTCCAACCTTACAAATTCTGTGGAATGTACTCCTTA-ACAAGCTAATTTTTCTTAATATTTCTTAATATGCATA--TCTACCATCTCTTGGGAGTTTCATATTTACTACTGTG-----TACTGCA-GACCCATTTTTAAGCTAACTTCACATCCTAAATTATATAGATTTTTGTTAATAAAAA-----TATTCTAGGATTTAATGAAA----CAATGTTTATTCTAGCTACAATTTTCCTAATTTTATAGTATTTTAAAGAATTTTAT--TTTTTCCCACTAAACTAAAAAATACTTATAGTCACTTCTAATAGTATCTTCATATCTTTGTTTTAAT-TCTTTGCTGT-ATATTTTCTATTTTGAACCTAA--------------------------------------------------------------------------------TAGCATAGGAGAAGTAAGCTGCAAATCATTATTCCATCAAATTCTAAGCTCTTCCCTCTCCCTTCTTTCAAATTTCTAGTTAGTGCATACATCTTTTTTTCCCCTTAGATCTCAT-----------------------AATCTACATGATATAAAGATTTGTAAGCCCTAGCTGAAAGTCCATTTACTGCAGGTGGTAGGCTATATGGCAAAATTCTAATTATAAGGGAATATTTCCCCCAAGATCTTGGCAATTGTTATAATGTATTCAGTGTACCTAAAGA--------------TTTTAAGCTGGATTAATTTTTGTTAAAGCTAAAAGATATCATGAATTAGCTATCATAGTAATAATTCTAATTATATAATAACTTTAAATAATGTAGCAACTAAACCAT-GGCTTTATTAGGAAATTATTCCTATTAGGTTATTAATCCAGTGGCTGCCAGAGAGAGTACACTCAGATCTAGAGCAT-AAAGATCTGTTAAGCATTAGGAGGATGACTCATTGTAGATCTCAGTCCATGAATTAACATTTAGAAAAAAAAATCATATACTTAGTTAGCTGAATGTGGAGATGAGAAGTTAAGAGAATCAACTTGAGAGGGTGATGAAGTTTAATGAGCTGATCTGTCTTCAATCTTTCTTTGAACCACAAATTAAACTTTAATCTCTTTTCGCTAAAAATATCAACTGGG a score=8278 s hg19.chr6_ssto_hap7 3613488 372 + 4928567 AACAATCAATTGGGAAAACTGTGTTTGAAAGAGTA-TATCAATAAGAATATGTCTTTTAC----AAAAAATTTTTTAAAAGATTAAACAGATTTTTCTCTGGCAACTTAAAAAATTAGTATTCATTAAAAATTTATT-ACCTCTGGGAAGAGACTTGGCCTGTGATCCCTTCTCAGAGCCCTTGTATTAGTCAGGGTTCTTCTGAGTCAAGTTGACATACAACATCAATCATCAGAGCCCACCTTTTTTTTTTGTAAGAGAAACTCACAAGATCACAGTCCTATCACTTTTTCTATGTGAGGAGAGCATTTGAGGGATGTTGGCGCATTATAATTATTCTGAATGCATACTGTT-----------TCTTGTACCATGAAT-------CAAAAGAAA s canFam2.chr12 4836977 297 + 75515492 AAGAA--------------TATGTTTGAAATATTCTTGTCAACAAAAATATATCTTTTACAAGAAAAAAATTTT---AAAGATTGAACTGATTTTTTTCTGGCAATTTAAAAAA-----ATTCATTAAAAACGAATTCACCTCCAGGGAGGGCCTTGGCCTATGGTCCCTTCTCAAAGCCTT-------------------------------------------------------------TTTTCTCTTTGTAAAGAAAACATACAC--------TCTTATCACCTTCCCCATGT--------CATTTGTGAGCTGCAGATACATCATGACTGCTCTGAATGCTTATTCTTCAGAGCAGTCATGCTGTGTTGTGAATGTGAATGCAAAGAAAA a score=44718 s hg19.chr6_ssto_hap7 3614170 1032 + 4928567 TAATTGCCCCTTTCAACTTCATCTCCCTGCCTTCCTTTCCCTC-CAAACCCACTCTCTTTCTAGTGTGAACTGAGAAAGAAGAATGAGGCTTAAACACGATTAAATATAAGGACATATTTTGTGTTTGTGTCAGTGTTTGGAATGTTTGAAATGCTTGAAACATGTCTCACTAGGTTTAAGTCTTATTTGCTTCTTTTGATCATATGTTTACAGAATTAAACAAAAGTTATTATTCTACTTTGTTTTGTATGGTTTCCTTGCTTGAAGAGCTGAGTCATATATTAAGTAATCCCAATAGAGATAAATCTGAATCCAGAAAACAGTTAAAAAAGTCAAACATTGATTTAAATGCG--GTCTTCTATTTTTA-------------AAA---GGATCCTTTTGTGTACATTTAGTTATCCAGCTTTTCT-GTAGATGTATATTTGTATTTGCAAACATTCC--------ATAAAGTTTCCTGACTAATCACAAAAAATGCATTTGTGATTCAGTATAGgaggcaatgtgttagtatgggaagagtgggaagagtgtgtattttggagataggacatcctgggtttaaatcctgacaccaatgtttaccaactctttaaccttgggtaaatacctgagttagtttcctaatctgtaaaatggggaataataatacctaccaggcaggcatatggtaagaataagagatgttacttttgtaagtgcctagcacagtgcacaaatacatagtcaatgctcaataCCTACTGTCTTTCAAAGGTAG--TTATTTAGAAGGCAATAGAAAGGAGATGGTATTTTGTTTTTAACTAGTTTTTTTCCCCCATTAATATGATTCAGAGGGACTTCACCTATAACTAAAAAAAAGTTCTAAATTCCCAGCAAATAACTAATGGAATTCAGAAACCAATCTTCCTTTCATTATGTTTTCCTGAGAATCAGGGAGGAGA-TTCTTTTTCAGAGCCTAGAAGATGGCCAGAGATTGTGGCACCCTTTCATATGAGCTTCATC---TTCTCTACAGCAATCTCTTAAATTGTAGTTATTTAA s canFam2.chr12 4837274 963 + 75515492 CAATTATACCTTTCAACTTT---------TCCTCCTCCCACTCACAAACCCACTCTA---CTAGTGTGAACTGATAAAGAAGAAT-------------GATTAAATATAAAGACATATTTTGTGTT------AGTGTTTGGAAAGTTTGAGATG----------------CTAAATTTAAGTTTTGCTTGCTTCCTATGGTTGTACCTTTACAGAGTT--TTAAGAATTATTAT-----TGTGTTTCATAGGATTTT----CTTGAAGAGCTGAGGC----ATTAAATAATCCTGATGGG---AAATCTGAATTTAGAAAACAGTT--AAAAGCCAAACATTGATCTAAATGGGATATCttttatttttattttatttttttGATATCTTGATTCTTTTGTGTACATTTAATTATATATCTTCCCTAGTGCATGTCTATTTGTATTTAGAAACATTTTATTTATAGATATGGTTTCAGGACTAATCCCAAAAAAGGCATTTGTGGTTCAGTATAGAAggcaatgtgttggca---------tggaaagagtatgtaattcagagacagg-------------aagtcttggcagtgctgtttaccaattctttaaccttgggcaagtgtctgagcaattttactgatctgtgaagtgtagaataacaatagctagcaggcaggc-tatgataagaataagagataatatttttgaaaatgcctagcatggtgcat-agtatatgg-aggggctcagtaCCTACTATTCCTCAAAAGTAGAATTACTTAGAAGGCAAGATAACG----------TTTTTTTTTAACTAGTTATTTT-TTCTGTTAATCGGATTCACTGGGCCTTCACTTATAACGAAAAAAGAGTTCTAAGTTACTAGCAAAGAACTCACACAATTTAGAAACCAATCTTTCTTTCATTATATTTTGCTGGGAGTTAGAAAGGAGATTTTTTTTTCAGAGCCTAGAAGATGGCCAGAGATTACAGCATCCTTTTGTATGAACTTCATCAAATCCTCTACAGCTGTCTCTCCAAAAATAGTTATTTAA a score=53998 s hg19.chr6_ssto_hap7 3615352 1117 + 4928567 AACCTTGGAAGTTTCTGGAAGATAGGAACATTCAAATTGGCCTTAGAAGCACAGGCCTCTATTTTGGGAGTAGAAACAGACAGGTCACAAAAGAATTAAAAGCAATGTAAAATATCAGAGTTGAGAATAGATATGGAACTTACCCACAGGAGTCAGTGCTAAAAACAAAACACAAAAGAAAGATCAGTGAGGATTTTCTAACTCAAGAGAAACCCACCTTCCAATAGTATCCTTCCTAGGTGAACTTAGAAACAGGACTTGGAGGGAGCACAAAA--CTCTGTTTCATCCTCAGGAGTGTTGCTGGCCAATGCTCCATATCGCACTCCACACAGAGGGTTATCTTTAGGATGCCATTT---AATTAATATAGGCATTTGAAATCTTGGG--------TAGGTAAAATCACTTCTACTGAAATTCAAACTATTGTATTTCCTGCCTTTCTTTGTTCTTTGATAAGTCTTTCATATGTCTTCTGCAAAACAGTTTTTTGCTCACTGTTCT---GGTCCGTTTGAAAAATGTATATTGTTGATCAATTACCAAAATCA-CATCTAG-----TCCTGACACATATTCTTTTTGTCAATCTTAGAGGATTTTC-TTTTTTAGTAAAAATTATTAGTTGCCAGATTATAGCACAGAGGAAATAGGCTCTGTTGTGATAGATTAGCTGGGAATATATGCTACCAATAATCTTTGGTAGTAAATAACTAGAATCA-AACACAAGACCATTATACTTTGTTACAAAAGGAAAATAGATAAGAAGAATTAAAATTGAAATATGAGGAAATCACTTATTGAAGAAATATTGACTGCTGTAAGGTAGAGGAACTCGTAACACAAGAACATTTGGGAAAAAGAACTTAAAGGTCCTAGGCACAGAAATAGGTAAGGCAAGGAAATGATCCAAACTTACTGATTTTTCCAGAACTGTCCACTGAAAGAGATAAAGGCAAACACTTCAGTAGGTACTGGGCATTCCCTTCTTC-CCAGTCCCCAAACCTCTGCATTGAGTGGG-ATCTGTGTCATTAACAACTAAATTTCATTTATTTAAATGTGAAGAAACTTCATTTCCCTTCCCCCTTCTCTTTGCCCAGTGTAGTTTACAAAGACCTTGTGATAAGCTACTTTA s canFam2.chr12 4838237 1089 + 75515492 AATATTAGAAAATTCTGGAGAATAGGAACATTTAAAATGATCTTAGAAACACAAATCTCTAATTTGGGAGTAGAAACAGCAAATCCAGAAAA----TATAAACAATGTAAAATATCATGGTTGAGAATAGATAAAGAACTTACCCATAGGAGATATTGCTAAAAATAAAACACAAAAGGTTAATCAGAGGGAATTTTTTAACTCAAGTAAAGTCTCAC-----------TCCCTTTTAGAGGAATGCAGAAGCAGCACCTTCAGGTCCTATAAAACCCTCTGTTTCATCCTCAGGAGTGCTGCTGACCAAAGCTCCACATCCTACTTCACAGAGCTGGTTTTCTTTAGGATGCCATTTGCCAATCCATAT-GCCATTTGCCATATGGGATTGAATCCTAGGTAATATCTATTCTACCAAATTTCAAACTATTGCATTTTCTACTGTAATTT-TTCTCTCACAAGTCAGT---------------------TTTTTTGCCCACTGTCCTTTAGATCCGTTGAAAAAATGTGTATTGTTGACCAATTTTCAAAATCATCACTTAGTGTCATCCTGACACTTATTTTTTCTGTCAATTTTAGGTGATTTTCTTTTTTTAGTGAAAATTCACCATTGCCAGATGATAGCACAAGGAAAATAGCCTCCCTTGTGGTAAACTAGCTGGGTATACATACTACCAATAATCTTTGGCAGTCGATAACCAGAGTAATGAGACAAGATCATTATCTTTTGTTCCAAAAGAGAAATAGAGAAG--------AAATTGAAGTATAATAACATCATTTCTTTAAGAAATATTGACTACTCTAAAGTAGAAGAATGTGAAATAAAAAAAAATTGGGTAACAAAAACTCAAAGGTCCTAGACACAGAAATAGGTAAGGCCAAGAAATGATCCAAACTTACTTATTTTTCCAGAACTGTCCACTGAAAAAGACAA----AAAAATATCAGTAGGTATTGGGTTTTCCCTTCTTCTCCAACCTGCACTCCTCTGCACTGGATGGATATCTATGTCATGAA----TAAGTTCCTTTTATTTAAATGTAGGGAACCTCCATTTTCTTTCCCTGTCCTCTTGGCCTGTTGTAGTTTAGAAAGATCTTGTGATTAGCTATTTTA a score=11618 s hg19.chr6_ssto_hap7 3617495 260 + 4928567 gaggtaagaatggattttacatatttaaatagttgaaataataataata----ataataataata-ataataataataataataataatattttgtggcacatgaaaattgtatgaaattcaaatttcaatgtcta-aaatagtattttattgggacatacccatgctcatt--cttttatatattgtctatgactgtttttgtgctacaacagcagggttgagtagttgtgacagagactttaaggcttataaaatttaaaatattt s canFam2.chr12 70660334 268 - 75515492 gaagcaagaagggacattacataatgataaaaggaatataccaagaatacCTCAAATCAACAACCCACAACACAAGaaataagaatggtattttatgacatgtgaaaatgatatgcaatctaagtttcattgtctacaagtaatgttttattgggacacatccttttttgttttcttttgcatattgtctatgaatacttttgtgccacaacagcaaagttgagtagttatgacagtgatcttatggcttataaagcttaaaatattt a score=19762 s hg19.chr6_ssto_hap7 3618082 618 + 4928567 AAAACCCAGCAAACAAAAACAAACATAAAACATTAAAAACATTTGTAGAAAAAATTTGCTCACCCCAGCCCTACAAGAAACTAATGTAATAAAAATATATTAGGAACTTACTAGTGTGAACTTGAGGTATTCCTGAAAATCAAAACAAGAAAATAGGTTAATGGCAGCATTTTTGGAACAGAAGTACAGTTCTTTCCTACTCCCAATTCCCTAGTTGT---------------------------TTTTTCTGGGGTACCA-TAAAGACTTCTAGCAGAATACAATGAAATATGATGAGACAACAGATCCCTTAGTGTGTTATAAGAACCTGACAGTTTTTACCACCTTTA----------TGTGGTCCAACTTATTGTTgtctctctaattgagctctctgctttcacccttgcctcccagtcagttcccagtacagcagttagcgggacccttttaaagtgtcagcaagactcctgcttaagagccaccaatggttccccatcttggtttaacaaaagtcaaaatcacaacagtggctttc-aaagatggccctggaagatctgtccctccaaatctctcttatagcttctttttatgtca---cttttcattctgttccagctatatggtacttgctatcttgcttttcctcaaata s canFam2.chr12 70660602 610 - 75515492 attatccagtgctctatagcaaa------------------------------attggccTGCTTTTGCCCTAAAAGAAACTAAAGCACAAGAAATAGATTGGAAACTTACTAGTAGCTACTTGAGGTATTA-TGAAAATTGAAATAAGAAAGTATATTAGTGGTAGTGTTTTGGGATCAGAAACACAGTTCTTCTGTATCCTTATTTCCGTAAttcttctttttttttttttttttttCCGTAATTCTTCTAAGGTACCATTCAAGACTCCTAGCAAGATACAGTG--TTATAGTAGGACAGCAGATCCCTCAGTATTAAATAATaatctggtacttctcactacctttaggattctcactgttatccaagttactttcatatctctaatt----cctctgatttcaccctagccttccagtcaa-tcccaatacagcagccacagggatcattttaagattcaggtcatctttctacctatgatctactaataagtctccatctttctt------gattcaaagtcattacagaacctctcaaaagaaggtcctgaaagatctatgcc-ccataattctctaatagctttccttcatcttatatttttttattatgttccagcca-----cacttgttttcttgctatccctcaaata a score=45467 s hg19.chr6_ssto_hap7 3619127 1229 + 4928567 tacttttattgttaaatttgaggtgactttcttgtagataggatatagttaggtcatgtttttaatgtactctggtaatcttt-tgaaaaaattggtgtatttagaccTACA------------------------CAAAATAAATTTCTGTGATTTGCCTGATTGTTATGAGAGGCAAGTCCCAATT----CTTTCAAGGAGGGGAAGTCAGAAAAGGCTT-------------------AA-------TCTCTG--CAGCACTAGTGGTCCAAGTTTAGATGTAATAAACTTTATGGAGGAAAAGGCAAAGATCAATCTTTCTTTTTTATCTTGAATTCTATTTTAGT----GTTTTCTCTGTTTGCATTTTGCAG--TCTGTCCCTTCTTCTACTCCCATTTGC---TACATCTTCTAGTTTTTATTAT--TTCTACCTTTTATCTTTTGGAGTTTCATCTTGTGACCCTGTGGCTTCAGACTGTGATACAAACTTCTTAGTGTATTATTTCCATAGTCT------------TCCCAGCATATTTTCCCAGCATTATTTCCTCTGGCTTCTCTTTTGCAACTTAACTCTCTAACCAGAAGAACAAATTGATTTTGGTCCTTTCTATGTGGTTTCTTGTTTCTGTGGGCCTTTGACTTAT-------TTAAAAGACaaagacaggaagaagaaagaaagaaaggaaggaagaagaaagaacgagcgaatgaacaaaagaaagaaagaaagaaagaCCCAAACTAAACCAAAATAGAAACCAAAAACAACAAAAGTGTCAGTGCAAATAAAGGAATCGAGATGCTACAAAAGACCAGAGGAAACTGAGAAAAACAGTAGGAGCTTACTGGTTGCTATTGGACCAATTGCTAAAAA-TAAAATAAAACAAATCAGTTTTTTTTTAAATTATGTATTGAGTTCCTATTGAAAATCCACTTGGAACACCAGAAAACAGACCTTTGGGAAACATTAAATCTTCTAGGAATATGCTATCTCTTATTAAGTCAATTTTAACTCCACTTTAATAACTTAAATATCCAGGCCATTTTGAATGGCACGTATGATGGGTTATATAAGTGAAGGCCACTTTTTCTAATGAAATAAAATATTTTTTTAAACATTCTTAA----ACTA--GGTCACATTCTTTCAGGAGACTGGCTAATAGTTAAAGGTTACTAATTTATGTTCTCTCTTCATCGTCTTTTTTGTCTTTTCATGTTTTCTCTTCCTTTCAAATCTCTACCATTATACCAGCTCTCACTGTATTT-TTTTTACAGTACAGAAAGTTTATTTGTAATT s canFam2.chr12 4857233 1266 + 75515492 tattcctattcatgaacatggaatatctttatatttatttggttcctgtttggttttatttatta-gagttttgttagtcttTGTTTTTAAATTGGTGCATTTAGAACAACAGTTTTTTGTTGTTTGTTTTTATGGAAATGCAAATTTTCATAGTTCACTTGAATGGTATGAAAGGCA--TCTCAATTGAGTCTTTCTAGGAG---AAGTCAGAAAAGGCTTTCAAAGTACTGTTCCTCCTAACCCTTTTTCTCTGAACAGCAGTGGTGGTTCAGGTTTAGATGTGATAAATTTTATGAAGGAGAGGACAAAGATCAGCCTTTCTTTTTTGTATTCAACTCTATTTTAGTTAGTGTTTTCTTTGTTTGCATGT-GCAGAATCTGTCC-TTGTAATACTCTCACTAATATTCATATCTTTTCATTATTCATATCTTTCCACCTTTTATCTTTTGGAATTTTGTTTTGTGACTGTAGAGCTTCAGACTGAAATATAAATTTCATAGTGTGTTATTTCCAAGGTTTCCTGTAATCTGATCCTATGATATTTTATCAACATTGTTTTCCTTTGTTTCTCTTCTGTAACTTAATACTGTAACCAAATGAACAATTT--------TTTTTCCTTTGCCCTTACTC--TTCTATGGGCCTCTGATATACAATCTCCTTGCCCCAAAACTATTTGTAAATGAAAGAAGTACTAGAAA-------------------AATGTGGAGGAGAAGAGATGGAAAATAATCTCTCAGTGTTC----AGAGTGGCCAGATA-ATTGAAAGTATCAGTGCAAATAAAGAACCCTGGTTGTTACA--------GAGGAAACTGAGAAACACAAGTGGAACTTACCAGCTGCTACTGGACCAATTACtaaaaaagaaaatagaatatattattatttttaaaaattttGTACTCAGTTCCTATTGAAAATCTACTTGGAACACTGGAAAAGGGACTTTTGGGAAACA---AATCTTATATGAATATGCTATACCTTATTAATTGAATATTAACTACACTTTAATAACCTAAATATCCAGGCGATTTTGGAAAGCCTGTTGGATGGGTTATAGGAGTAAAGCTTACTTTTCCTAATGAAATAA-----TTATTTTAACATTCTTAACCATACCAAGGGTCACAATCTTGCAGGAAACTGGTTACCAGTTAAAGGTTACTAACTTAAGTTCCTTCTTCATTTTCTTTTCTGTCTTTCAGCATTCTATCTCCCTTTCAAACCTCTATCACCATGTCAGTTATCATCATATTTCTTTTTGCAGTACAGAAAGTTTATTTGTAACT a score=8944 s hg19.chr6_ssto_hap7 3620356 201 + 4928567 AAAATGTAGTTGAGTTTAGCACCTTTTCTTTTTCTTTTCAGTTTTTATGAGAATTTAAAACTCTTCAAGAGTTAGTAATACTTATTTTAAGTTTTGCTTCTTTTACTTTTTTTCCTATTTCAGTCTCTAATCTCAAAATATC--TGTTCTCTTCTTCACCATTCATTGTATTCTCCTTCTAGATTTCCATTACTAAGTTTACT s canFam2.chr12 4858767 202 + 75515492 AAAGTGGAATTGAGGTTAGCCCCTCTTCCTTTTCTTATCAATTTTTATGAGAACTTAAAACTCTTCAGGAGCTAGCAATGATTA-TTCAGATTTCACTCATTTTACTTTTCTTCCCACTTCAATCTCTTATCTCATTATGTCTTTGTTCTATTATTCACTTTCCAGGTTTTTTTTGTTTTTTAATATCTGAGCTAAGTTCATT a score=10404 s hg19.chr6_ssto_hap7 3621380 263 + 4928567 AGGTCATATGTTTTTTAAAGGTCTGTATTGTCAATAAAAACTGGAGGCAAATTGGA-ACTGAGAAACATTTTTCTTTTCTTT-TTTAAGTTGCAGTGCTTGCAAGCAAGTCCTGTCTTCAGAAGAACTGGCTCACTTAATAAGAGACATAGCAGGAGTTTAAGGGGCATAATCTATAAAGTTG--GTCAGTTTGCCAATTATTCTCATTGGTGGAAAAAT-AATTCTCCATCATAATTATATATTGGCAAGGGTCATAACACATTTGt s canFam2.chr12 4867297 251 + 75515492 aggtcttATGTTTTTAAAAGGT----ATTGTCAA---GAACTGGAGGCATAGTAAATACTGAGAAACATTTTCTCTTTCTCTCTTTAAGTTGTCATGCTTTCAGG-GAGACATGATTC----AGAACTGGCTCACAGAATAAAAGACATAGTAAT-GTCTATTG----CAATCTACAAAGTTATAGTCAGTTTGCTCATTATTATCATTAGTGAATAAATGAATTCTGCATGATAATTATATATTGACAACAGTCATTATATATCTGT a score=11696 s hg19.chr6_ssto_hap7 3622163 455 + 4928567 TATCAATATTGTAAAAATCAGCACTAAAATTGTTTCCATTAGGAAGCCAGCAATGTAAAGCATATGAACTTAAGCCTTTATTTTAGGTTGCAGTGCTAAATGGAACTATTATTCAATTTAAGAACATATAAAGCAAGTT---------GTCTGtc---cctccctccctccttctctcc----ttcccttcctTCTGGTTTTCTTTCCTTCTTTTTTCACCTCCTGCC------------ATCC----TCAGTTTATCTCATGATACAAGGTTTTTCTGACTGTCATGTTTAATGTCAAGTGCTCAGGCAAAATAGATGATTTGGCTAGGCT---AACAAAGTATTCATTTTGCAGTATTTCCATTTTTTTAGTGCATTTTCTTATGATTTTGAGGAAATTTTGCTTTCTCTCCACATTTCTATT-TTGTTCCTTGTATTGTTAGTGCTTTTCCTTTTCTT-------TAATTTTGTTTCAAAATAA-----TCAAAATTATT s canFam2.chr12 4867551 471 + 75515492 TATCAGCATTGTAAAAGTCGACACTTAAATTATTTCTATTAGGGAGCTGGCAATATAGAGCAAATGGGCTTTGGGTTTTATTTTAGGACCCAGTA-----------TATTGATCAATGTAAGAGTAGACAAGACCATTTAGATGGTTGGCCTGTctttcctccctccttccttcccaccctttcttccttcctccttacttcttctccttTCCTTTCCCCTACCTGCCTCATTTCCCCATATTCTCTTTCAGTTTATTTCAGGATACGAGATTTTTT---CCATCTCCGGTAATATCAAG-ACTCAGGCAAAATTGCTGAACTGGCTAGGTTAAAAACAAGGTGTTCCATTTG----------ACTTCTCAGTTAAATTGTCTT---CCCTAGAAGAAAAtacatttttt----agaggtttattcttatgtttattcttgtaagttttgtttctttcgtgaatagtataattttgttttcacattacattttcaaaattgtt a score=61135 s hg19.chr6_ssto_hap7 3625865 1674 + 4928567 tgttttaaagttatctaatttcagctttcagtggaccattatgatctgaggatttatgtctcttttcttctggaatgttattaattattacat-ttaaaattattacctgacatttattcttttaattctctcttatcaaattcc-attacacctgacctcattctatttaca----------gctcttctttttcatattttcaatatcttctgtgtgttattttgagctgagattttcaatattttccatgtactattttgaactgagatttcctcagttctgtcttccagtttactcttttaaactgtgatta--ataatatttaaatattattta------catatagttacat----taga-atttatatattatctaatcat----tgtttcaATTCTAATAAC--TTTCTTATTTTCAAGGTTTCAGCTTGGTTCTTTTTTAAATCTGCCTGTTCTTTCTTCAAACTATCTCTCAAatatatatacatatatatatatatatatTTTTAATCTTTTTAGAAAGGATAGTCTTTCTTTTATTCCCCAATAGGTAAGCCACAACCTATCAGAACTCCAGCCTTTCGTGGCCTTTTCATGCTATACTAGCT---------GTCATATGCCGTATCAGCTGCCTTACCGTTTAA---------AAtttt--------------attatctccttcacctcctccatttaggcatttcttccctcctatcttatcaaggttacttatgacattcattttgcaaaattccttg-tcagttcttactccaaaaattcattgcttagctgtttttgatgctgttgtttattt--------tttccatattgaaatactatcttctcttgagtgctgcgagaccccccctttactggttctccttctttctccctgct-----------------------cactacttctctatatgcatagttagatttttctc--attctaaacttctaaaactgat-----------taatccttaccccttcatttttacatatacctttgattatctaatttagtccaatcgtcttaaatgttacctatat-gctgattactgtctaatttatttcccacccaatctctccctaaatcttcagactcaaatatttaattgccttttgatatAGAGTATATGCTTGGATGGGGGGcagaatgtttagtgggatt-tttcttgttactcccaaattgacaagtaggatcacaaagctgaggaaaaagagGTTATAACTTCCCATTACCCTCCTCAGCAAACTGAGGTGAGACAAGCCCTCA-GGAGGGATTGCAGCATTGCCA----------GCTCCATAATTAAAAGGGAAAGGATTCTTGAGGCTGTGCAG-TGCAGAGGTGCTGCTCGCCGGCCTTGACA--TGATGGCCAAATTAGCTCTCCTATCTCAAGTGTCACCCTTTTTCCAAGACAACATAAGCAAACAACTGTAAAGGGCAGGAGATTTAAG--AGTCTTTAGAGTTGTGAGTAGTTAACAAAGGAATGGTGTTGtaggggaggaaga-atagcgctttctttttctgaaggcaaatgagtagcacttt--gagatttgcttacagtgattgggggtatctgtgagaaaggatgtgtggcaacccatctcctggttgaat--------agtggatttgttgatttgttttgtgcctatctgaatga-aggaaaataaaattggagagagacagtagtgcagagTG--------------------------------TCCTTGTTCT-gtgataaggattcttgagcctcctgagggttcagtgggcagtg s canFam2.chr12 4869260 1749 + 75515492 TGCTTTAAAGTTATATACTTCTAGTCCTCAGTGGATGCttttgatttgaggatttaaatctcttttctactggaatgttgttaattactatttcttaaaaatattacttggtattaattctctgaattctct------gaattcctattacacacgacct---tctcattacacccaagcattgttcttttctttaatatttttaatctcttca-------------------------------tctttgtgtactcttttga---gagatttcctcagttctatcttccagtttactctttttagatgtgattagtataatacttaactattactgaaacaactatatatttACATACCATAAATATTAAAATATCATTTAATTATCTATTGCTTCAATTTCAGTAACAGTTTTTCATTTCTAAGATTTAAGCTTTGTTGTTTTT---ATCTACCTTTTCTTTTTCCGAAATACCTTAAAAA-------------------ATATATTTTCTTTATCTTTTTT--ATGGATAGTCTTTCCTTTATTTCCCTTTAGAGAAGCCAAGACTTATCAAAACTCTAGCCTTTAGTTCCTCTTTGATGCTATACTAGCTCCACTATATGCTATATGCTGTATTATCTGCCTTATCTTTCAAGAAAATGAAAATTTTCTTTGAGAATAAAAattttctccttaacttc-tccagttaggcttttgttcccatctaccttatcaggattactgatgacttctgtcttataaaatccaatgatcaattcccagtccaaaactttatttctcagcagttcttaatgtaattattcattcattcatcctttctatcttaaaatact--------ctgaattctatgacactctcacctt----gttttttttctttctgcttactttatatgccagatatttttatgccaatattttggcatatactttatcagatatttctcttctttccaacctc-aaaattgatgttcttgagctcaattcttagccatctatctttaa--------ttggtgatctaatttagtctagtggttttaaatgctaactattttgctgatcactgtcaaatttatactttacctgacttctcccagtagcttcagactcaaatatttaattgctttttgatacacagtatatgcttggatgGGGAACAAGATGTTGAGGGGGGCCCTTTCCTATTATCCCCAAATTGACAATTAGTATCAAAAATTTGAG-AAAAAGAGTTTATAACCTCCCATCTCCTTCTTGACCCAGCTGAAGTGAGACAATCCCTCATGAAGAGACTG--GCATAGCTGTGAAGTCTGTGTTCCCAGACACAATGGGGAGGGATTCCTAGAATTGTGCAAATGCATATCTGGTTCTCTCAGGTCTTAACAAATGGTGTCTAAATTAGTTCTCTGGTACCAAATGTGTCTTTCCTTTCAATCTAA-ATAAGAAAACAACTCTAAGGGGAAGGAGACTTAAGGCAATCTTCAGAGTTGTGAGTAGTTGACTAAGGAAAAGCGTTGTGGGGGAGGAAGGCATACTGATATCCTTT-CTGAAAGCAAATGAGAAGGACTTCAAGAGATTTGCTTGCAAAGATTGGGA-TGTTTGTGGGACAGGATGTATAGCAACTTATCACTTGGGTAAATGTCTTCAAAGTAGATTTGCTGATTTGTTT-ATGACTATTTGAGCATTAGGAAAAGAAAATTGGAGAGAAGGAACAGTGCACAATGATGAGGATGCAGTAGAGCAACAGGTCTTCTTTTCTTTTTTCTTGTAGCAAGGAGGCTTGAGCTTCAGAAGGATTGAATGGGCATTG a score=16668 s hg19.chr6_ssto_hap7 3627539 515 + 4928567 caaaata-------------------------------catcctggcttgagccttcttgctagtatgtcactcaagtgggtg-----------gcctacttggtaagggcatctctgcagtacgagcaatgaagtgtattgctcgagagg---gagttgaggggctctggaattggcaagactagagtcagtactcccacatcagggactaggca----------------tggtcgagttcttgtatgttcctccaaagaactggaatatgtattgtacaagacatttgggtgtctgctctagatgacatcaaaggacagtcagtctcaggttctcagagaaaagaacctacaactaacagaggaAGGAGATTGCATGCCCCA--------AATCCATCCTCTCAGCCTCAAC--AGTGGGAATTATAACAACGGTGGGAATTATAGCAACAAGGAGAGTGGACAGGAAGGGGAAGCACATTGTATTTCTCCTCCCCATTCTGAGTCAGTGTGCCTGAGACGGGCCATTAGGAGAGGAGAGGGTTTTAAAGGGGATGGCTTAAGCATTTTAAATAATTTAGCAT s canFam2.chr12 4875261 552 + 75515492 CAAAATAAAGCAAAACAGACATAAAAAAAAAAAGAGGACATCCAACCTTGAACTTTTGAGTTGGTATCTTACTCAACTTCATGCTACTACCGTCACCAAATAGGTGACGGTA-----GTA--ACAGACTATGAGGTATATATACTGTGAGGAGTGAACTGAGGGGCTCCAGAATAGGCTATACTAGAGTTAGTACTCTCACATCAGGGACTGTGCAGTAGAGTCCTCAGAACTGGGCAAGTTCTTGCAGATTCCATCAAAGAACTC-AACATAAATTCTACAAGACATTTGATTGCCTACTCTAAATAACATTGAAAGGCAACCAGTCTCATGTCCTCAGAAAAAAGGAC-TGCAACTAACAGAGAAGGTAATTTGCATGCTTAATGAAGTGAAATTCATCTTTCTAGCCTCAGCTCAGTGGGAACTGTAAT--------------------CAAGGAAGGCGGACAGAAAGGAGAAGGAGACTACACTTCT--TCCCTATTCTGAGTCAGCGGGCTTAAGACTGACTGCTAAAATGG---AGTATTTCAAGAGGAGTGGTTGGAGGatttttaattatttattat a score=1932 s hg19.chr6_ssto_hap7 3628054 50 + 4928567 AACTAGAAAATTATGGGTTCTAAGACATCATTAAATG-----ATAGGAAGGAGAC s canFam2.chr12 4876016 49 + 75515492 GACTAGAGAATTATGGGTTCTA------CCCCAAATGTATATACAGGGAAGAGAC a score=23090 s hg19.chr6_ssto_hap7 3628119 919 + 4928567 TGCTTGAAGCTTGCTAAGGTCAGATTATTTAATTAATTAGTCCTAAATGTTCCaggcatctagaaccaagcatacacaaaactgaactcacaatagcatcctataaatctgctcttctccac---tacctaaatcaataaatagtttcattcgtcaagtttcttagaccccaaatctaggagtaacccttggtgtcttctttttcccttaaaatcacattcagtcgaacagcaggccctgttggctttgcccccaaaataaataaaatctgaagaccttcttcccacttccactctgatcactcttctcattgccacactcacctttagtttcaggcctcttaactggtcttcctacttgccctcttgagccctcactc---tcactccagttaatcctccacaataatagagtgatcttt----taaaattataaagtagaccctatcatttccctgttcaagcccttcagttacttctcatgatgcctagaatgaaatctgcaattttttattaaggactgcagggcccgacataatctggcttttgtcgctctggccctacctcctgctctgcctcct---tctttctagcctggctggctgt--tttgcacctccatagcaggcctgtgcatgttgtacttgttccttttgcctgaagcacact----cccccttctataccatctttctttagtctgtt-----actcttcttatttttctacatgaatttatctgcctgacatttactgtatgtttacttggcattatttgcctgtttt-atctcaacatataaactccttaagtgcaaggactttgtcttgctcatggctatatttccagtgcttaggataatgcctggcctacaataggc---caatatatatttgttgaatacatATATTTTTAAAATGCATTAATATCTTTGAAGACTTTTTCTTTT s canFam2.chr12 4876065 820 + 75515492 TGCCTGTAACCTACTGAGTGCAAACTTTTTAATAAACTAGTCATAAATGT-CCAAGTGTTTTGCacaag-----tgcaaaactgaggtcaagattgcctc---taaatctgtcctttttcccatctatctagattggtagatagccccatttttcttgttgctttggccccaaacctgaaaataacccttagt----tcatttccatttaaactcaca---gacttaacagcagaatctgttggttctaccttaataatacatggaatgtgaagac-ttctccccacctccactctgatcacttctt-------------------------------------------------------ctcttgagctcctgcccatgtcttcccagttaatcctccaca------tagtagcctttgttatgaaattatgaagcagacataac----tccctgtttaaacccattagtggaccttcattataggtagagtaaaatctaccatttta-accaagggctacaagcctcaa-atg-tgtggcccctgtttctctgacctcatctcctatcatccctcttctttctttttatctctctaggctagagtatgcatccttacagcagaccc-tacat-----ccttgttc-ttttgcctggaacactctttttccTCTCTATATGCCATCTTTCTCTAGTCtcttctcttactatgcttatattttttatggcatttatctgaaagatatatattg-------atttg---ttatttgattgtttttatttcaaaatataaacttcttgaatgcagtggctttccccc-cccactattatattctcagtg-------taatacctggcctagaataggcacccaatatatttttgtt-----------------aaatgcatTAGTGTCTTTAAAGATTTAAAATTTT a score=56364 s hg19.chr6_ssto_hap7 3629075 1752 + 4928567 TTTCTTATTTTAGTCTTCTTCAGATTGCTCTAGTTATATTTCTCTGGGTTGGAATTCTCCAATTTGTTGGGACTTGTGAGGTATCACTCATATGGTGCTGGATTTTCTCATAGATTTCATAACTTTT---AGTAGTTTCTTATTCCTTGGGGGCTATCTTTCATGGATATTCTATGATATAAATACCCTGGGTTGTGGATCCCTTCTTG--------------GTGGCTATTGTCCTAACTTCCTGGGTACACTGCCACTGAACCAGATCTCAGCTGTTTTAACTTGGAATATTATGCACACTGCATGGGTAGCACACCTCCAGCAGGGCTCTGCACCCTGGACAGATCTAACTCTGG------ACCTG------------------TGTGGATGGCTTTGTTTTCATGCCTGGGGCAGATGGGTGAAGATATTTTGGCTTCTCCGCGTGGGGAGGCAGCGTGTTTTCTGCTCCTGGCTTTACTCCAAGTGGTGGAATTCCAGTTTTCTACATGTTGTATCTTGAGGCTTTGTCCACCATCTAGGATCAGGTGTTGAAACCCTACCTTTGTTCCTGAGGCAAAGCTGCTACCTCTGTTTCCTCATCCCCTCACCATTCCTCCCAAGAGCTTAACTTTAGCTTTCCTTTCTTTATATGTGTTCCTATATTCCATTTCTGCTCCTTGGAAATCACTCTTACCCTCCTTCTTTATGCTTAGGTATGACTGTGCATTTTTCAT--------TTAAAAATATTTC-CAGCCAAGACTTAGCCAGCCAAAAATGAGGTGTTATAAACCCTAGTTACTTTAGCATTCCTTTTTTCTTTCTCCCTACCCCTCGGGTATTGGATTTTTACATTATTTCCCTGCCCATCCTCTTTGATGACTCCTCTGAAAAGGACACTATGC-ATTCAATTTGGGTTCTGCCTTGTAATTTCTAGCTGTGAGACCAATAATCCCTTCTCCTGAACTTTGGTGGGCCTTGGTCTCTGTTCCCAATTATATGGCCCATGTGCAAACATAGACATCTGGAATTTCCAGCTTCATTTCTGGGTCTCAACCACTG---------AGTATGTATTTTCATCTGTGCAGTGAGAATACTTAGCTGATCAGCCTCTTTGCTCAGGCTTCAGAAAGG-TATGTGGATAGGGATTTTGGAGAGACACTCACTTATAATTCTTTGTTGACAGTTCCATTTCTCTTCACTCAAATACCAATGTCTTTGTCCTAACATTATTGAAATTAATAAAATGTTGTTATTATGAAAACTATATCCAGAGTGTGTTTAGAAGGAACTGGAGGAGGATATATAAGCATATTTGAAATCTGTTAGAATAACATAGATGTCTTTCATGTTT-AAAAATTGGAAAATTTTACCTACTATCTGGATTAAGTGAGATGCtt---------------------cttgcatgaagaggttggctggagctgggcagcagctaccttcttcagactatgcgtgtcctcccagtttaacacagttcccaggagactcacctcaactcgctcatttactgacctgcctgggctcttttggcatctgcgtttttaaccTTGACAGGAACTTTGGGTTTTAATATTAATGTGATTTAATTTCAGGATGAGGAATCTCGGCTGATATTGGGTTTGCTTAAA--TCATTTGTAACTGAGATATGAGAACCAGATTTGCATTTTGGAAAACTAGGACACAGTGTGAAAGGTGCTTTCACGAATTCTATATTAAATATCATCATGGTCAACGCTTGATCTGGTTTAAAAATTGAGTCACTGTTGGTATGTGTTACCTTGGAAGTTGGGTTTA s canFam2.chr12 4877048 1562 + 75515492 TTTATTATTTTAGTCCTCTTCAGATTGCTGCAGCTATATTTCTATGAGTTGAaattctccaatttgttgtggcttatg-----tcattcatgtggtgctgagtttcctcatacatttcataattttttttcgtagtctcttattctttgagaattatcttt-gtggatgttttatcctgtgaatattctgtgctg--gttcccttcttgtggggagttttgtggttgctgttgccttagctatcagggtacagcatcaccaaaccaaatttcagctgttttggcttgggattcc---tgcagtacatggatggCACACTTCCAGCAGGGCTTTGAGCCCTGAGCAGATGTAGGTCTGGTGTCCTACATGCAGATGCATGATGGAGTCTGCATGTGACTCCGTTTTCATGGTTATGACAGGTAGGCGAAGATATTTTGGTTCTTTTCCTTGGACAAACAG-GAAAGTTTTGCTTCTAGCTTTGCTCAGGGAGTCTCAATTCCAGTTCTCACCATGCT--------------------------------AGGTTCTGAAATC-----------------------------------------------------ATTCTACCC--------------------------------------------------TCCTGC-------------------CTCTCTTTATTTATGCTTAAGTTTAGCTGTGTAGttttaatagtaataataaaaaaaatataGCAGCCAAAACCAAGCCAGCCCGAAAGAAGTTAGTGTAT-TCTTATTTCCTTTAG-ATACCTGTTTATCTCCTCCTAATCTCTTGAGTCTTGGATTTTAAAATCTCTTTCAT-CCCACCCTTTCTGGTGTCCCCACTGAAAAGAACACTAAATTCTTCACTTTTAGTTCTGGATTATAGTTTCCATCTGCAAAACCGATAGTGCCTTCTGCTGAACTCAGGTG--------------TTCCCAATTACAGGGCTTGTTCCCAAACATGGACATCTGATGTATCCAGCATCATCCTTGGGTCTACACCATTGGCCCTGTTGACTCAGTATTTTCATCTG-GCAGTGAGACTAGTTAG----TCAGCCTCCTTGTTCAGGATTCAGAAAGAACATGTAGAATG----------------------------TCTATGTTAACAGTTTCAATTCTCCCTCCTCAGATACCAATCTTTGTGTCCTAACATTATTGCAGTTATTCAGAAGT----ATTATAAAAA-TATAATCAGAATGTGTTTAGTTGGAAATAGAGGGG--TGTGTAAGCA--------GTCTGTTAGGGTGATCCAGTTGTATATCATATtttaaaaattgggaaattttatctaacatctggattaagtcagatgctttggcaagtctagatctgcattcttgcatggagaaattggctagaactgagcagcagctaccctttttagactgtacatgatctttc-------caCTGTTCCTAGGTGATGTGCCTTACCT-ACTCAATTA----------------------------------GTAGTCTTGACAAGAACTTTGGGCTTTAATAGTAATGTAATTTACTTTCAATCTGAGGAACCTCAAGGGATATTGATATTACATAAAAATCATTTGTAACACAAGTATGAGGACCAGATTTAAATTATGGAAAATTAGGACATAGTGTGAAAGGTGGTATCATGAATTCTATGTTAAAGATCATTATTGTCAGTACTTGATCTGGCTTAAATACTGAGTTACTGTTGGTCTGTTT--CCTAGGAAATTGAGTTAA a score=19131 s hg19.chr6_ssto_hap7 3631147 328 + 4928567 TAAATAATGGGAAATATTACAGTTATGAATCAAAAAGTTTGTCTTGCAGTCCTAATCTGGAGGACTTTGGGTAATGTAGAAGCAAATGAATATGAGAAATATGAGTCTCAATCTTTTGGATACTT-AGAAGTGGAA-----ACATCTAACATAAATCTCCACATATGACCAGCTGAGAAATAAAGAACTTACTTGCAGTTCTCTGCGAAATTACTAAAAAATAAGCAAAAAGAAATCCATTTAATTTTTCTCAAATGGAGAAAACATAGCATTATCTAACATATTTTGTTGGAGTCTGTGAGGGGAGGACTTGTGTGGGCA-AAGAAGGAAGCAT s canFam2.chr12 4878610 334 + 75515492 TAAGTAATGGGAACTCCTACAGTTATGAATTAAAAAGATTATCTGGCAGTTCTAATCTGGATGACTTTGGGTAATGTGAAAACAAAAAAATATGAGAAACATGAATCTCAATCTTTTGTGCCCTTTAGAAATAGAATATCTGTGCTTGGGAAAAGTCTC-ACATTTGACAGATTGATAAGTAAAGAACTTACTTGAGGTTCTCTGTGAAATCACTAAAAAATAAGCAAAGAGAAATCCATGTAATTTTTCTTAAATAGAAAAAATATAGTATTATCTAATATTTTCCACTGGTGTCTCTGAGGGAAGGACTTGAGTAGACATAAGAAGAAAGCAT a score=21969 s hg19.chr6_ssto_hap7 3631608 771 + 4928567 GCTTTGGGTATAGTCTCGGGTAGAGACTGCCATATCTTTCTGTTTCCTTTGAATAGCATTATAATGTTTGAGAGAACACTGAAAGCCTCTCTCCATTTAAACATCATTATGGATTTC------ATCTCTCAATAATTCTGCTTAC--GTGTTATTTCATAATATTGTTCA--GTTTATTACTGATGAATCCTAGCTTAGTCCC---TCTTTTAATTAGTGTTTAAAAAGATTCTCTGTAATATAGACCATGTAGGGTAATAAGGAAGCAAGGGAATAATGGGAACCACAAATCACTTTGACAGAAGTGAAGTGAAGGGGAC---CAA----AGAGAACCAAAGTAGAAAAAGACATGTAATACTTACTTATAGGTGCTGCCAGCTGACCT-----AAAAAAATTAGATATCAGTGAAGATTTGTTTGAAAGGAGCAAGTTTCCTTCTAGGGAGAGATATTTGTGTTGGGG-AGAATCTTGGTAGTCACACAGCTCTGGATGACAATGGCTAATTCTCTGTTAAAAGCTCCAATTCTTTATGACTGCATTCTTGGGTAAGTATTTGGGTC-AGTTTCTTATCTCTTACAAAGGGGT---------------TAGTGGAGTGATTCTAAGGATTAAATGGG--ATTATGTAATTAAAGCACCTATATAATTC-TAT-----AGGAGGTGCAAAGTACATATGTGTTTGAAATCATGTAAATGTAAGCTTCCTTCTCAGGGAGAAGCTAGATTAGCAGAGGGCAGAGGAAACTGGGAGCTTTGAGTC--AGGTAGCTGCACACAGAGTTAGAAATGAGTAGGGTAg s canFam2.chr12 4878944 709 + 75515492 GCTTTGAGGA-----------------------------------------------------------------------AAGGTCTATCTCCATTTAAACATCATTTTGGAATTCCTGTCTGTCTCTCAAAAATTTTGCCTACCTCTGTTATTT----ATATT-TTCAGGGTTTGTTGTTCATG--TTGCTACTCAACTCCTTTTCTTTTAATCAGTATTTTCTTAAATTATCTATAATGTAGGGGAAGCTGTATAGTAAGGAAGCAAGAGAGCAATGAGAAACTCAAATCACTTTAACAGAA-TGAAGTCACTTAGACTTTCAAGACCAGAAAACCATAGTGGAGAAACAGATATAATACTTACTTATGGGAGGCAGGGGCACACCTTAAAAAAACAAATTAGGTATCAGTGAGTAATTGTTTGAAAGGAACAAGTATCCTTCTAGGGAAGCATATTTGTGTGGGGGAAGAGGCTTGGTAGTAACACAGCTCTTGGTTCAAATTA-TGGTTCAGTG---------------------AACTGTGTTCTTGGACAAGTATGTGCCCCTGGTTTCTTAGCACTTGCAAAGAAGTACAAGGTCCAAGAGGTCTTGGATTTACTCCAAGAATCAAATGGGAAATGATGTAGTTAAATCACCTATATAGTTCTTATCACTGAGGAGATGCAAAGTAAACAAATGTTTGAAATTAAATAAATAT--GTTTACTTCACAG----------GATAAGCAGAAGGCAAAGGAAGGTGACAGCTATGAATCTTAGGCTACTACACA-GGAGTTAGAAATGAGTAGGGCAG a score=23853 s hg19.chr6_ssto_hap7 3634579 917 + 4928567 TGCTTGAAGCCTGCTAAGGTCAGATTATTTAATTAATTAGTCCTAAATATCCCaggcatctagaacctaacatatgcaaaactgaactcacaatagcatcctataaatctgctcttctcc---gctacctaaatgaataaatagtctcattcgtcaagtttcttagaccccaaatctaggagtaacccttggggtcttctttttcccttaaaatcacattcagtcgaacagcaggccctgttggctttgcccccaaaataaataaaatctgaagaccttcttcccacttccactctgatcactctctccttgccacactcaccttaatttcaggcctcttaactggtcttcctacttgccctcttgagccctcactc---tcaccccagttaatcctccacaataatagagtgatcttt----taaaattataaagtgggccctatcatttccctgttcaagcccttcagttgcctctcatgacacctagaatgaaatctgcaattttttattaaggactgcagggcccgacataatctggcttttgtcgctctggccctacctcctgctctgcctcct---tctttctagcctggctggctgt--tttgcacctccatagcaggcctgtgcatgttgtacttgttccttttgcctgaagcacact----cccccttctataccatctttctttagtctgtt-----actcttcttatttttctgcatgaatttatctgcctgacatttagtatatgtttacttggcattatttgcctgtttt-atctcaacatataaactccttaagtgcaaggactttgtcttgctcatggctatattttcagtgcttaggataatgcctggcctacaataggc---caatatatatttgttgaatacatATATTTTTAAAATGCATTAATATCTTTGAAGACTTTTTCTTTT s canFam2.chr12 4876065 820 + 75515492 TGCCTGTAACCTACTGAGTGCAAACTTTTTAATAAACTAGTCATAAATGTCCAAGTGTTTTG------Cacaagtgcaaaactgaggtcaagattgcctc---taaatctgtcctttttcccatctatctagattggtagatagccccatttttcttgttgctttggccccaaacctgaaaataacccttag----ttcatttccatttaaactcaca---gacttaacagcagaatctgttggttctaccttaataatacatggaatgtgaagac-ttctccccacctccactctgatcacttcttc-----------------------------------------------------tcttgagctcctgcccatgtcttcccagttaatcctccaca------tagtagcctttgttatgaaattatgaagcagacataac----tccctgtttaaacccattagtggaccttcattataggtagagtaaaatctaccatttta-accaagggctacaagcctcaa-atg-tgtggcccctgtttctctgacctcatctcctatcatccctcttctttctttttatctctctaggctagagtatgcatccttacagcagaccc-tacat-----ccttgttc-ttttgcctggaacactctttttccTCTCTATATGCCATCTTTCTCTAGTCtcttctcttactatgcttatattttttatggcatttatctgaaaga-------tatatattgatttg---ttatttgattgtttttatttcaaaatataaacttcttgaatgcagtggctttccccc-cccactattatattctcagtg-------taatacctggcctagaataggcacccaatatatttttgtt-----------------aaatgcatTAGTGTCTTTAAAGATTTAAAATTTT a score=18638 s hg19.chr6_ssto_hap7 3635533 698 + 4928567 TTCCTTATTTTAGTCTTCTTCAGATTGCTCTAGTTATATTTCTCTGGGTTGGAATTCTCCAATTTGTTGGGGCTTGTGAGGTATCACTCACCACTCACATGGTGCTGGATTTTCTCATAGATTTCATAACTTTT---AGTAGTTTCTTATTCCTTGGGGGCTATCTTTCATGGATATTCTATGATATAAATACCCTGGGTTGTGGCTCTCTTCTTG--------------GTGGCTATTGTCCTAACTTCCTGGGTACACTGCCACTTAACCAGATCTCAGCTGTTTTGACTTGGAATATTATGCACACTGCATGGGTAGCACACCTCCAGCAGGGCTCTGCACCCTGGACAGATCTAACTCTGG------ACCTG------------------TGTGGGTGGCTCTGTTTTCATGCCTGGGGCAGATGGGTGAAGATATTTTGGCTTCTGTGCATGGGGAGGCAGTATATTTTCTGCTACCGGCTTTACTCAGAGGGGCCTAATTTCAGTTTTCCGCATGTTGTATCTTGAGGCTTTTGCTGTCATTTGGGAGCAGATGTTGAAACCCTACCTTTGTTCCTGAGGCAAAGCTGTCATCTCTATTTTTTCATCCCCTCACTGTTCCCACCAAGAGCTTAACTTTAGCTTCTTCTTGCAATGTGTTCCTATATTCAATTTCTGCTCCTTGGAAATCTTACCCACCTTTTTTATGCTTAAGCTTGGCTGTATATTTTTCAT s canFam2.chr12 4877048 573 + 75515492 TTTATTATTTTAGTCCTCTTCAGATTGCTGCAGCTATATTTCTATGAGTTGAaattctccaatttgttgtggcttatg------------tcattcatgtggtgctgagtttcctcatacatttcataattttttttcgtagtctcttattctttgagaattatcttt-gtggatgttttatcctgtgaatattctgtgctg--gttcccttcttgtggggagttttgtggttgctgttgccttagctatcagggtacagcatcaccaaaccaaatttcagctgttttggcttgggattcc---tgcagtacatggatggCACACTTCCAGCAGGGCTTTGAGCCCTGAGCAGATGTAGGTCTGGTGTCCTACATGCAGATGCATGATGGAGTCTGCATGTGACTCCGTTTTCATGGTTATGACAGGTAGGCGAAGATATTTTGGTTCTTTTCCTTGGACAAACAGGAAAGTTT-TGCTTCTAGCTTTGCTCAGGGAGTCTCAATTCCAGTTCTCACCATGCT--------------------------------AGGTTCTGAAA--------------------------------------------------TCATTCTACCC--------------------------------------------------TCCTGCCTCT---------------CTTTATTTATGCTTAAGTTTAGCTGTGTAGttttaat a score=58444 s hg19.chr6_ssto_hap7 3636774 1414 + 4928567 GCCAGCCAACACTTAGCTATCCAAAAAGCAGGTGGTATAATCCCTAGTTACTTTTGCGTGCTTTTTTTCATCCCCTCTACTAGGATGATATATAGGATCCAAGACCCTATATATCTATTGGGTCTTGGATTTTTACATCTTTTTCCTGCCCATACTCTCTGATGACTTCTCTGAAAAGGACACTATGC-CTTCAATTTGGATTTTGGCTTGTAATTTCTAGCTGTGAGACCAGTAATCCCTTCTCCTGACTTCAGGTGGGCATTGGTCCCTGTGCCCAATTATAGGGCCTATTCCCAAACATGGGCATATGGATTTTGCAGCCTCATCCCTGGGTCGGAACCATTGTCTCTGT---------ATTTTTATCTGTGCCGTGAGAATACTTAGCCGATCAGCCTCTTTGCTCAGGCTTCAGAAAGA-TGTGTGGATGAGGACTTTGGAGAGACACTGGCTAATTCTGTGTTAATAGCTCCAATTCTCCTCTCTCAAATACCAATGCCTTTGTCCTAACATTATTGAAATGAGTAAAATGTTATTATGAAAACTGTATCCAGAGTGTGTTTAGATGGAACTAGAGGGGAGTATGTAAGTATGTTTGCAATCTGTTAGAGTAACCCAGATGTCTGTCATGttt-aaaacttggaaaattttacctactatctggattaagtgagatgctttggcaactctgaatctgaattcttgcatgaagaggttggctggagcag-gcagcagctaccctcttcagactatatgtgtcctcccagttttacacagtttccaggagattcacctcatctcactcatttactgacctgcctgggctcttttggcatctgcatttttaaccTTGACAGGAACTTTGGTTTTTAATATTAGTGTGATTTAATTTCAGGCTGAGGAATCCCA-GCGATGTTAGGTTTGCTTAAA--TCATTTGTAACTGAGATATGAGAACCAAATTTGCATTTTGGAAAGGTAGGACATAGTGTGAAAGGCGGTTTCACGAATTCTATATTAAATATCATCATTGTTAGTGCTTGACCTGGTTTAAATATTGAGTCACTGTTGGTATGTGTTACCTTGGAAGCTGAGTTTAGAACTAAAATAATGGGAAATACTACAGTTACGAATCAAAAAGGTTGACTTGCAGTCCTAATCTTGAAGACTTTGGGTAATGTAGAAGCAAATGAATATGAGAAATATGAGGCAC---------------TTAGAAATAGAAACAACTAAGATAAGAAAAGTCCCCACATATGACCAGCTGAGAAGTAGAGTACTTACTTGCGGTTCTCTGTGAAATTACTGAAAAATAAGCAAACAGAAATCCATTTAATTTTTCTCAAATAGAAAACACATAGTATTATCTAATATATTTTGCTGGAGTCTGTGAGGGGAGGACTTGGGTGGGCA-GTGAAGGAGGTAT s canFam2.chr12 4877641 1303 + 75515492 aGCAGCCAAAACCAAGCCAGCCCGAAAGAAGTTAGTGTATTC--TTATTTCCTTTAGATACCTGTTT--ATCTCCTC-----------------------------CTA---ATCTCTTGAGTCTTGGATTTTAAAATCTCTTTCAT-CCCACCCTTTCTGGTGTCCCCACTGAAAAGAACACTAAATTCTTCACTTTTAGTTCTGGATTATAGTTTCCATCTGCAAAACCGATAGTGCCTTCTGCTGAACTCAGGTG--------------TTCCCAATTACAGGGCTTGTTCCCAAACATGGACATCTGATGTATCCAGCATCATCCTTGGGTCTACACCATTGGCCCTGTTGACTCAGTATTTTCATCTG-GCAGTGAGACTAGTTAG----TCAGCCTCCTTGTTCAGGATTCAGAAAGAACATGTAGA-------------------------ATGTCTATGTTAACAGTTTCAATTCTCCCTCCTCAGATACCAATCTTTGTGTCCTAACATTATTGCAGTTATTCAGAAGT-ATTATAAAAA-TATAATCAGAATGTGTTTAGTTGGAAATAGAGGGG--TGTGTAAG--------CAGTCTGTTAGGGTGATCCAGTTGTATATCATATtttaaaaattgggaaattttatctaacatctggattaagtcagatgctttggcaagtctagatctgcattcttgcatggagaaattggctagaactgagcagcagctaccctttttagactgtacatgatct-------ttccaCTGTTCCTAGGTGATGTGCCTTACCT-ACTCAATTA----------------------------------GTAGTCTTGACAAGAACTTTGGGCTTTAATAGTAATGTAATTTACTTTCAATCTGAGGAACCTCAAGGGATATTGATATTACATAAAAATCATTTGTAACACAAGTATGAGGACCAGATTTAAATTATGGAAAATTAGGACATAGTGTGAAAGGTGGTATCATGAATTCTATGTTAAAGATCATTATTGTCAGTACTTGATCTGGCTTAAATACTGAGTTACTGTTGGTCTGTTT--CCTAGGAAATTGAGTTAATAA-----GTAATGGGAACTCCTACAGTTATGAATTAAAAAGATTATCTGGCAGTTCTAATCTGGATGACTTTGGGTAATGTGAAAACAAAAAAATATGAGAAACATGAATCTCAATCTTTTGTGCCCTTTAGAAATAGAA-TATCTGTGCTTGGGAAAAGTCTCACATTTGACAGATTGATAAGTAAAGAACTTACTTGAGGTTCTCTGTGAAATCACTAAAAAATAAGCAAAGAGAAATCCATGTAATTTTTCTTAAATAGAAAAAATATAGTATTATCTAATATTTTCCACTGGTGTCTCTGAGGGAAGGACTTGAGTAGACATAAGAAGAAAGCAT a score=87501 s hg19.chr6_ssto_hap7 3638329 2390 + 4928567 GCTTTGGGCATAGTGTTGGGAAAAGACCACTGGATCCTTGCACTATAATGTTTGAAAGAACACTGAAGGTTTCTCTCCATTTAGACATCATTTTGGATTTCATCTCTCTCTCTCTTTCTCTCTCCACCCCCCTGAAAATTCCTCCTACTATGAAATAATATTTCATAGTATTGTTCAG--TTTATTGTTGATGAATGCTAGCTTAGTCCCG--Cttttaattagtattttaaaaaaat--------tataGGGCAAGCAGGGTAATAAGGAAGCAAGAGAAGAATGGGAAACTCAAATCACTTTGACAGAAGTGAAATGAAGGGGACCAT-------AGAGAACCAAAGAAGAAAAAGAGATGTTATACTTACTTATGGGTGCCATGGGTGGACCT--AAAAACCAAATTAGATATTGGTGAAGATTTCTTTGAAGGAAACAAGGTTCCCTCTAGGGAGGTATATTTGTGTAGGGGA-GAAACTTGG-----ACACctttctgggtctaaattatgattctatgactatgtattcttgagtaagtatttggctc-agtttcttatctcttacaaagggat---------------tggtggaattattctaaggattaaatgagg--taatgtaattaaagcacttaaatagttcta------gaggagatacaaagtaaatatatgtttgaaattatGTAAATATAACTTCTTTCTCAGGGAGAAGCTGGATGAGCAGAAGGCAGAGGAAACTGGAAGCTTTGAGTC--AGGTAGCTGCACAC-AGTTAGAAATGAGCAGGGTAGAGACAGGTCTCTAAGCCTTGCAGGGAACAACAAGAACAACAACAGAAAAGAGTAGAAAAAG-----AAATGGAACTTACCGCGGGGTGCTGAA---GGTGGACCAGCTGAAAAACAGAGAGGTATCTTAGCAACTGTTTTTTCTCCCA-TGATATTTTCCTTTCTATGTAGAGAGTTTCTTCTTGGTAGGTCATTATAACAATAGGGAAAACTTTCCCTTTGGTATTCATTTATTTTTAATATGAATCAGCAGAATGTGAACTTTCAAAAAATCATTAATAACTTCATGGAATTTTGATGATAGGAAAGTAAGTGGTTAAAGTAGTATGCACCCCAAGCCTGGAAATCTTAGCTGTACCAGGGAAAGGAGAGATTCCAGAATCCTACGGTGGTGAAAACATGGA----CATACTGATGGCAAGTGAAATGAATCCAGCTTGCAACTAGACCAGAAACAATTATCTCCTTTTTCTTTCCCCATTGCTCAAATTGTCTTTCAGTTTGTTAAGTCCCTTGTAATATATCATTTTGACCTGCTGATAAACTTTCTCCCCTTCCCTTTATTTTTTAATA-AAATAGT--AAGTTTGATTTTTTCCATAGAGTTATTTAAAAGGTGAGAGAATGATGTGTCACATGAAAGCAAAACACGGAGGAAATAACAACTTAAAGTTGTTATTTAAAGTTTAGGCTTAAATCCTCTAAAGTCTCTAAAAGGTGATACAAATTTTTCTTAGATGTTTTGGAATTTAAATGTGGAAAAAAGAGACCAGATATGGCAGGAGGTTCAAATGAAAAAGGGTTATAGAAACTTCTTATCTACTCCTTTCTCTCCTACCATTTTTTCCCTTTTTA-AGGTAGTCTCTTGTTGATGGGCTTTGAAATTTTGTAAAATTTTTTTCTCTGCTCTGACTTATCTCTTCCCTTTTTGCAGTGACTGGTAACTGCTTGAAATCCTGCAGGGGATTGTAAATTGATAGTCTTAAAACTTTCCAGTACATCATGAATAATGCAGAGAGGTTTTGATAATGAGACAGCAAGAGGCCAAGATATATCTCAAGCCCTTTGTATCCCAATATGGGCAGATAAAGACTCTTGGACTCCACTAGAGACCAACTGAGTCCTAAAGGAGAGAATTCAATGAACACATAGACTTACTGATTGTGTGAGGATGCGATCTGACTGAAAAACAAGCAAAGATACTTTTTGTTACCCCTTTCTTGTTTCTTTTCCTACTCATTTTTTTTTCTATTGGTAAATTTACTAGTGATATACTTGCTTGAACATTTTTTTTTAAATCAAAGGCACTAGAAATTTCCAGAAAACTAATTATCAGCTGGTTGAATTCTGGATAATGGAAAAACAAAAGGCTGAGAAAATA-GAACTTCAAGTT-CCATGTTGCAACTCAAGTTCCAATAGACATCAGTGGACTTTGATAAATGCACCACAGAGAAACAAATAAATAACTGACTAATTGCCTGTATAGATGACTTATCTAGAAAGCAGAAATG-GATCTATATC----ATTTTTCTG-TCATTTTTTTTCCTTCTGCATGGAAAGTTCCTAACATTCTTTAGAGTCATGTAAAAACTTTTTTCTCAGGTCTTTATTTTTTATGCGAGTCAGTGAATGTTCTAGAAACTTATTAATAATTTA s canFam2.chr12 4878944 2280 + 75515492 GCTTTGAGGA-------------------------------------------------------AAGGTCTATCTCCATTTAAACATCATTTTGGAATTCCTGTCTGTCTCTC-------------------AAAAATTTTGCCTACCTC----TGTTATTT----ATATT-TTCAGGGTTTGTTGTTCATGT-TGCTACTCAACTCCTTTTCTTTTAATCAGTATTTTCTTAAATTATCTATAATGTAGGGGAAGCTGTATAGTAAGGAAGCAAGAGAGCAATGAGAAACTCAAATCACTTTAACAGAA-TGAAGTCACTTAGACTTTCAAGACCAGAAAACCATAGTGGAGAAACAGATATAATACTTACTTATGGGAGGCAGGGGCACACCTTAAAAAAACAAATTAGGTATCAGTGAGTAATTGTTTGAAAGGAACAAGTATCCTTCTAGGGAAGCATATTTGTGTGGGGGAAGAGGCTTGGTAGTAACACAGCTCTTGGTTCAAATTATGGTTCAGTGAAC-TGTGTTCTTGGACAAGTATGTGCCCCTGGTTTCTTAGCACTTGCAAAGAAGTACAAGGTCCAAGAGGTCTTGGATTTACTCCAAGAATCAAATGGGAAATGATGTAGTTAAATCACCTATATAGTTCTTATCACTGAGGAGATGCAAAGTAAACAAATGTTTGAAATTAAATAAATATGTTTACTTC-----------ACAGGATAAGCAGAAGGCAAAGGAAGGTGACAGCTATGAATCTTAGGCTACTACACAGGAGTTAGAAATGAGTAGGGCAGGAACAGGTCCATAGGCCTTATAGAAAACATTAA------CAACAAAAAAGAATTTAAAAAACAAACAAACTGAACTTACCTCTGGGCATTGAAAGTGGTGGGCCAGCTGAAA----GAGAAGTATTTTTGCAAGCCTTTTCTCTCCCACTCTTTTTTTCCTCTTAGTTTGGAGAGTTCTTTTTTATCAAGTCATTATAACAATAGGGAAAATGTTCCCTTTGGTCTTTATTTAGTTTTAATATAAATT-GAAGGATTTTAACTTTTCAAAAAGCATTAGTAAC--CATGAAATTT-GGCCATGGGAAGGCAGGTGGTTAAGGAAATACATACCC-ATGCCCAGAAACCCCAGGACAGCTGGGGAAAGAAG---TTATAGGACCCCACAGTGGAGGAAACATGGAAGGACTTACTGAGGGCAGGTGGAACTGATCCGGCTGAAAAACAGAACAGAGAAAATTATCTCCTTTTCCTTTCTTCTCCATTCATTTTGTTTTTCAATTTGTGAAATATCTTGTAACATGTCATTTTTAACTGCTGGGAAACCCTCCCTTCTGATCTTTATTTTTTTATGCAAATCGTGGAATTTGAATTTTTTCCATAA--TTGTTAAAAAGCTAAGAGAATTATTGGTGGTGTGAATACGAGATGTCTAAGAAACAGGAACTTCAAG--------------------------CCTCTAAAATCCC-AAATGGCTAGGGAAATTTTCCTCAGATATCTTGGAATTCAAATGTAGAAAAA------CAGACTGAGTAGGAAGTCCAAGTGAAAAACTGTTTTAGAAACTTCTGATCCCCCTCTTTCTCTTCCATTGTTTTCCCCTTTTCTGTAGACAGCCTCTTGTTGGTGGTCTTTGAAACTAAGCAAAATTTTTTTCTC------------------CCTTGTTTATATAAATCAGTAG-TGTTAGAACTTTCAAAAAAAAAAAAAAA-----------AGAACTTTCTAGTACATTATTAATAACCCAGAGGGACTTTGATAATGAAATAGCAAGTGGCCAAGAGGTACCTCAAACTCTTTGGATGCCAACATGGCCAAATAGATACTCTTGGACCACACTAAAAACCAATCAGTCCCCATGACAGAGAATGAAATGAACATACAGACTTACTGTTTGTCTGAGGTGTTGATCCTACTGAAAAATAAGCAGAAAGACTTCTTATTGCCCCCTGCTTATTTACTCCCTTATTCA-TTTTTTTTCTATCGGTAACTTTTCTAGTCACATAACTGCTTGAAAAGTTTTTCT--GATCAGGAGTATTTGAACTTTCCAGAAAACTTACAATCATCTGG-TGTGTTCAGGTTGATGGAGAAGCAAAA-GTTAAGAAAATAGGAATTGCAAGTTGTTGTACTGGAAGTCAAATTCCAATAGACATTGCTGGACATTGTTAAATGCACAGCAGAG--ACAAATAAACAACCTACTAATTGCTCATGTAGATAACCCACCTGGAAAACAGATATATTATCTGTATCTTTGTTTTTCCTGTTCATTTTTTCTACTTCTATATGGAAAGTCCCTGACAATCTTTA-AACCATGGAGAAATTTTTTTCTCTGCTCTTTAATTTTTAGGTGACTCAGTAAACACTTTA-AAACTTATTAATAAGCTA a score=104661 s hg19.chr6_ssto_hap7 3640723 1343 + 4928567 TGCCTTTCTGCCCATGGATGCCACGGAAGAAGCATCATTAAAGTCTCTCTTCTCCTGGCCGTCTTATCTAAGTCAGAGTCTCCTAAAGAGCCAGAACAACTGAGGAAGCTCTTCATTGGAGGGTTGAGCTTTGAAACAACTGATGAGAGCCTGAGGAGCCATTTTGAGCAGTGAGGGACACTCCCGGACAGTGTGGTCATGAGAGATCCAAAC-CCAAGCGCTCCAGGGGCTTTGGATTTTTCACATATGCCACTGTGGAGGAGGTGGATGCAGCCGTGAATGCAAGGCCACACAAGGTGGATGGAAGAGCTGTGGAACCAAAGAGAGCTGTCTCAAGAGAAGATTCTCAAATACCAGGTGCCCACTTAACTGTGAAAAAGATATATGCTGGTGGCATTAAAGAAGACACTGAAGAA-ATCACCTAAGAAATTATTTTGAGTAGTATGGAAAAATTGAAGTGATTGAAAACATGACTGACCGAGGCAGTTGCAAGAAAAGGGGCTTTGCCTTTGTAACCTTTGATGACCATGACTCCGTGGATAAGACTGTCATTCAGAAATACCACAGTGTGAATGGCCACAACTGTGAAGTTAGGAAAGCC-TGTCAAAGCAAGAGATGGCTAGTGCTCCATCCAGCCAAAGAGGTGGAAGTGGTTCTGGAAACTTtggtggtggtcatggaggtggtttcggtgggaatgacaactttgatcatggaggaaacttcagtggttgtggtagctttggtggcagctgtggtggtggtggatatggtggcagtgaggatggctataatggatttggtaatgatgggagcaattttggaggtggtggAAGCTACAATGATTTTGGCAATTACAACAATCAGTCTTCAAATTTTGGACCCATGAAGGGAGGAAACTTTGGAGGCAGAAGCTGTGGCCTCTATGGTGGTGGAGGCCAATACTTTGCCAAACCATGAAACCAAAGTGGCTATTGTGGTTCCAGTAGCAGCAGTAGCTATGGCAGTGGCAGAAGATTTTAATT------AGGAAACAAAGCTTAGCAGGAGAGGAGAGCCAGAGAAGTGACAGGGAAGCTACAGGTTACAACAGATTTGTGAACTCAGCCAAGCACAGTGGTGGCAGGGCCTAGCTGGTACAAAGAAGACATGTTTTAGACAAATACTCATGTGTATGGGCAAAAAACTCGAGGACTGTATTTGTGACTAATTGTATAACAGGTTATTTTAGTTTCTGTTCTGTGGAAAGTGTAAAGCATTCCAACAAAGGGTTTTAATGTAGA-TTTTTTTTTGCACCCATGCTGTTTATTGCTAAATGTAATAGTCTGATCGTGACACTGAAAAAA s canFam2.chr25 39986676 1351 + 54563659 TGGCTTTCTGCCCCTGGACGCCGCCGAGTAAGCATCGTTAAAGTCTCCCCTCCCACCGCCGTCATGTCTAAGTCAGAGTCTCCCAAAGAGCCCGAGCAGCTGCGGAAGCTCTTCATCGGAGGTTTGAGCTTCGAAACGACCGATGAGAGTCTGAGGAGCCATTTTGAGCAATGGGGGACGCTTACGGACTGTGTGGTAATGAGAGACCCCAACACCAAGCGCTCCAGAGGCTTTGGGTTCGTCACCTACGCCACCGTGGAGGAGGTGGACGCGGCCATGAACGCCCGGC-GCACAAGGTGGACGGAAGAGTCGTGGAACCAAAGAGGGCTGTCTCCCGAGAAGATTCTCAAAGACCCGGTGCCCACTTAACTGTGAAAAAGATTTTTGTCGGTGGCATTAAAGAAGACACTGAAGAACATCATCTAAGAGATTATTTTGAACAGTATGGGAAAATCGAAGTGATTGAGATCATGACTGGCCGAGGCAGTGGCAAAAAGAGAGGTTTCGCTTTTGTGACCTTTGATGACCACGACTCTGTAGACAAGATTGTCATTCAAAAATACCATACTGTGAATGGCCACAACTGTGAAGTAAGGAAAGCCCTATCGAAGCAAGAGATGGCTAGTGCTTCGTCCAGCCAAAGAGGCCGAAGTGGTTCTGGAAACTTtggtggtggtcgtggaggtggttttggtgggaatgacaactttggtcgtggagggaacttcagtggtcgaggtggcttcggtggcagtcgaggtggtggtggatatggtggcagtggggatggCTATAACGGATTTGGTAATGACGGAAGCAACTTTGGAGGTGGCGGAAGCTATAACGATTTTGGCAATTACAACAATCAATCCTCAAATTTTGGACCCATGAAAGGAGGAAATTTTGGAGGCAGAAGCTCTGGCCCCTATGGTGGTGGAGGCCAATACTTTGCCAAACCACGAAACCAAGGTGGCTATGGCGGTTCCAGCAGCAGCAGCAGCTATGGCAGTGGCAGAAGGTTTTAATTACTGCCAGGAAACAAAGCTTAGCAGGAGAGGAGAGCCAGAGAAGTGACAGGGAAGCTACAGGTTACAACAGATTTGTGAACTCAGCCAAGCACAGTGGTGGCAGGGCCTAGCTGCTACAAAGAAGACATGTTTTAGAC-AATACTCATGTGTATGGGCAAAAAACTCGAGGACTGTATTTGTGACTAATTGTATAACAGGTTATTTTAGTTTCTGTTCTGTGGAAAGTGTAAAGCATTCCAACAAAGGGTTTTAATGTAGATTTTTTTTTTGCACCCATGCTGTTGATTGCTAAATGTAATAGTCTGATCATGACGCTGAATAAA a score=46594 s hg19.chr6_ssto_hap7 3642079 1154 + 4928567 TTCTGAGTAATGGAAAAATAAGGGACCAAGGAAATTGGAACATTA------TCATATCACAATGTGGATGCATACATTTTGGCTTAAG---ATATGTTAGACACTGCTGGAGATAATTGAGTTTCACTCATGAAGGGAAATGGTCAAACTTACAAGAGGATCCTGTAGCTGAAAAACAAAGATAAA--TCAACGTGTACAGCCTGCTGAAAGAGGAGCTAGTTTTCGTACTACTTTCCTGAAAGGAAATATCAGAAATGGCAATGGAAGAAACATC----CTTCTTAGGGCAAGGGCATAGAGCGCTGTGCTGGGGAATATACCTGCCATCATGCCTTGTGGGGATTCTGCCTTCTGCTTAGTATAGGAGGCTGCAGGAAAGGGAGATGATTGATCTCTTCCCTTTTTGCAGTGAGTGGTTACTGCTGGAAATCCTGCGGGGGATTGGTAATTTCTTTAAACTGTGCTGCCTTTACCTTTCTTCTCCCTATTTCTGCCATCCTGTGAAAGCTTTCATTTATTCATACAAATATCCTTCCCTT-CCCTTGTTGACAAGTCACTATAAACTTCGGGTAGTTTCC----GAACTTT-------------------ATCTCTCTATTT----------------------TGGGTTTGGTATTCTCCTTTATTCATTCCTT-ATAGGAGTGGAGCAGCAGCTAAATAGAGGAATAAGCAAAAGAAATGAAGAAATGTGAGTTTCTACACACACAAGACAGAAATGAGCAAAGAGGAAAAGTATGCCAGGCCCTATAGGAAGCCAAAGGCAGCTATCAT---ACAATAGACATGGAACTTAACCAGTCATTTCTGAAGTTTCATCTGGTGGTAAAAAACGGAAGGAACACAAAATGGAGAAATCAACATGTGTAGAACCAAGTGAATTCAGTTCTCCCTTGATAGGCTTAAAGAGGGTAACTGCAGAGAGGATATGGGGGGCCCTAAAATCTG-------------ACAGCTCAGTGCA-TGTCCGGCCTTACGTGCCTTACTTTGTGCTTTGTAGCCTCAGACCTGTTTCTGCTGGTCTGAGGCAGGAGATTGGCTATAAAGTGGTAAAGTGAGGCTTTGTTCTTCCTTCTCATTTCATTTAGGAACAGTAAATGCTTGAAACACTTCTAGAGGTTCATAATGTCTTAA----------------ACTTATATGTACTTTTGTCAGTCTCATTTTCTTTTTCTTTTATTTTCt s canFam2.chr12 4881230 1172 + 75515492 TTCTAAGTAATGGAAAAATAAGGG-TCAGGGAAATAGGAGCTTTAAGCTATTGCTATCCCAATATGGATGGATAAATTTTTGTTTAAGTGGATCCATTGGACACTGCTGGAGATAATTGAGTTCCA-TCATGAAGGGAGATAGTCAAACTTACAAGAGGATCTTGTAGCTGAAAAACAAAGAAAAAAATCAGCATGGAAAGGCTGGTGAAAGAGGAATTCGTTTTC-----------TTGGTAGGGAATATCAAAAATGTTCATGGAGGGTGGATCAAACCCTTATAG----ATATTGTTGTGCACTGTGCTGGAGAACAG--TTGCCATCATGCCTTA-GGGGATTCTGTCTCCTGCTTCCTCTGAGAGCCTTCAGGAAAGAGAGATGATTTATCTCTTCCCTTTTTGCAGTGAGTGGTAACTGCTTAAAGTCCTATAGGAGATTGCTAATTT----AAACTGTGCTGCTTTTACTTTTCTACTCCCTATT----CTATTCTGTGCAAACTT-CATTCATTCATACAAATGTTCTCCCCCCACCCTTGTTGACAAGTCACAATAAGCATCAGATAGTTTCCTCTGGTATTTTCATGtaatattaagtattaatattaatacttaatattaaataGGGTTATCAAGTAGGGTTTGTATTCCACTTCATTCATTCATTCATTGGGATGGAT--GCAGTCAGGTAATGGAATAAGCAAGAGA--CTGAGAAACATGAACATCTATACCCACAGGATAGAA------------GCAAAGGATTCCAGACC-TGGAGGAAGCCAAAGGCAACTACTGTTTAAGAACAAGTATGGAACTTA-CTAGTCATTTCTGAAGTTTCAGCTGGTGG--AAAAATGGTAAAGAAAGAAAAGGGAGAAATCAGGGTGTGTAGAATGAAGAGAACTCAATTCTCCCATGAT-GGTTTGAGAAGAGTAACTACAGAGAAGATGCAGGGAACTCTTGTTTCCCTAGCTCATTGCACATAGCTCAGTGCAATGTCTTGATTTAGGTCCCAT-CTTTGTGTTTCACATTCTCAGACCGGCTTCTACTTGTCTGGGGCAGGAGAGTAGCT-----------------------GTCCTTCCTTTCCAGTCCTTCCAGGGG-AATAAATGCTTGAAAT--TTCTAGAGGTTCATAATATCTTAAGCTtgtacttctatgtacttctatgtacttTTGTCATTCTCATTTTCATTTATTTCTTTTCCCT a score=70564 s hg19.chr6_ssto_hap7 3644689 1563 + 4928567 TAATCAGTTCATTTTGCACTTTCTCCAAATCGCTTATAACTTAGGGGAAAGCTAGAAAGGAATAAAATAGCAATATATTTTTCATTTATACACTATCATATTTTTAAATTGTTTACACATAAGGGAGAGGGAGTCAAGC-GGGGAGAAAAGGGAAAGGGAATTCATGTATCCATGTAGATTCTCTGGCACATGGTGGCTATTAGGGAACTGTGGACCAGATGTGACCCTTCCTTTAGCCCCAGTGAGTTCCTCTGAGGTGAGCTGGCTTATGTTTATCCCCCCTGTAATAATTATGAGAACTTCCAAGGCTATAAGTCTTGGCAAT--CTGTGAGTACTGAGAAAAGCAGTCTTGATTCAGGGGAATAGTCAATAACAAATGGCTCTTATTCATTCACAAA-AAGGATAGTTAGAACCAGAATTCAGGGCAGTAAATATCCAGTTTTAATGGTCATAGTGTGGCTGTATGGGATGCTGCCTGCCCTCTACACATTTTGGGTTTGTTTTCCCAAGTTATCTTATAggactgtaaactccatggcatcagtgaccaaccatatctttctctcccttattcatgactttatcctcagtgctcagcttagtatcagatacatggtaggagctcagctagatgaaggaatgtttgtttgaatatatgTGACTTGCCCTCTGATAAT-TCTTCCTGCTTGACTTAAACTTTCTAATGCTATCCCTTAATTTCTAGATTCAGAATTTCCCGTGTCCTGGGGTTGGTTCGAT-------------GCCCTAGTTTGTCCCTAGCTCGTCACAATATGAACTTTCATTTTATTCTCTTCCATATG-------------TGATGCTTCTGCCAGTTCCTGTAAATTACAGCCCAATTACTGTTATATCCTGTTCCATGAGGTGCTCTGTCCTATCTTTCTTTTCCTCTCTGTCGTGCGTGTGTGTGCGCGCGCGCACGTGTGTTGGGGATGTTTGGAGATAGTGAGCCGGATAGGACATGAGGAAAGAGAAAGGCCTTTGGAGAGAAGACTGGAGAACTCAGGTTAGACTAGACCCTGCATAGTATTTCCTGTTAAATTTTA-----------------------------------------------TTGTCTTTTCTCC--CTTTTGTATTTATTCTTAAAATTTGATTTTC-TTTTCTCATTTCCTC----CTCATTGTCTCCTCCATTATCTTTGAGTAGGCCCTTTAGAAACTACAAAGCACTTCAGAACTGGAAAGCTGCCCTTATTATTCTCTCTCTGCTACTTTAGAAAATTCTTGTATATTGTTATAGAAGACATTATGACTATTTCTGGGGACATTTTCTTACTCTTTTTCTTTTAA---AAAAAATAGCCCTGGAGAATTCTCAGTAGGTTGAAATCAGGAAGCATAAAAACATGTGTAAAATAACTGCTCTTATGGCAGTGAGACACATCTAGGGCATTTGAGACAGGGAACAGGCCCTCTAGACACTGTAGAAGATCAAGGAACCTGGAGGGAGAAGGATAGATAAGGTACTTACCATTGGGTCCAGGATATTGTACTAAAAAATAGAAACAAACAAA--------------TTAAacacacacacacacacacacacacacacacacacacacacacTTC s canFam2.chr12 4882687 1569 + 75515492 TAACTAGTATATTTTGCATTTTCTTCAAATCATCTGTAATTTAGGGGAAAGCTAGGAAGGAATACAT--GTACTACAATTTTCAGTTATACATTACTGTATGTTTTAAGTGTTTACACATA-GGGAGAGGGAATTAAGCAGGGGAGAAAAGGGAAATGGAATCCATGTACCCATATGGATTCTCAAGCACATGGTAGCTAATTGGGGACTTTAAGCCAGATGAGACCCTTCCGTTAGGCCCAGTGAGATCCTCTGAGATGAGCAGACTTATGATT-TCTCCCTTATAAGAATTATAAGAACTTCCAAGGCTGTACGTCTTGGTGATAATTAAGAGTACCTAAAAAGGAGGCTCCAATTTAGGTGGATAGGGGATAAATGATGGATCATGTTTATTCACAAAGGAAGGTATTTAGAACCAGCATTTAGGGCAGGCACCATCCAGTTTTAATGATCATAGTATGATTGTGTGGGAGACTGCCTGCCCTTTCCAGGTTTTGAGTTCCTTTCCCCAAG--ATATTGTAgaactgtaaactccatggcaccagagattaaccaaatctatctct--tttcttcatgactttatccccaagcctcagttcagttcctgatac-----aggagctcagctagttgaaggaa----tgTTTGAGTACATCTGATTTGCTTTCTGATAGTATCCTCTTGTTTGGCTTAAACTTTGGAATGCTGTCACTTAATTTGCACTCTCAGAATTTCCAATGGCCTGAGGTTTGTTTGATATTCTGGAATTTGACACTGGTTTTGCCCTAGCTAATCACAATATGAGCTTACCCTTCACTCTTTCACTTATAGTTTGTAGTTGCCTGATGCACCTGCCAGTTCCTGT-AATTGCAGCCCACCTACCATCATATCCTGTTCCCTGAAGCTCT--------------------------------GTGTGTCTGGGTGTGTGTGAGTGTGTTGGG--TGTTTGGGGTAAGTGGGCAGGATAAGACATGAGGAAAGAG-AAGACTTTGGGAGAGAAAATTGGGGAACTCAGTGT-GACTAGATCCTTAGTAGTATTCCCTGATATACTTTACCCAGGAAACTGGGAAGAAAACTGATAAGACCTCAGTCTATTTAAATTTGATTTTTTTCCTTCTTTTACATTTATCTTTAAAATTTGCTTTCCTTTTTTTCATTTTCTTTACACTCATTAT---CTCTGTTGTCTTTGAGTAGGCTCTTTATGAACTACAAAGTACCTCAGAAGC-GAAAGCTACCCTT-TCTTTCTTTCTCTGTTACTTCAGAAAATTC---TACATTATTACAGAAGGCATTATGACCATTACTGGGGACATTTTCTTACTTTTTTCCTAAAAAAACAAAACACAATCCTGGAGAACTCCCAGCAAATAGGAACTGAGGTGCATGAAAACATGTATAAAACTGTTGTCTTTAT---AGTAATACATA-------CATTTGGGACAGGGGACAGGCCCTCTATACACTGTAGAAGATCAAAGAACACCAGAGGAAAAAGATAGATAAGGGACTTACCACTGGTCCCAGTATATTGCACT-AAAAATAGAAACAAACATAAATTACTCTGGTTGTTGAACATG-----------------------ATAAACACACAAACCAC a score=13735 s hg19.chr6_ssto_hap7 3646555 439 + 4928567 TGATATTTTCCAAAGGCAAGCAGTGAA-----AATGATTTTCTCAGGAATTACTAAATCTCAGTATTCAGGATTAAATATTTTTCACTGCACTGCTGCTGTACTCTAGCCTCTCCATAAGAACCAGATCTTCTTTTAGGAGATTATTAACCCTGTTTTAGC-------ATAACCACTTCATTCTTGCTTTTC---ATTATAGGTGTTGGAGATGAGATCCTTAATTGTATTCCTTT--CCCCATATTCCCCCAGTGTTTTTCCTCAGATCACTCTGTTTCACTCTC--AGCTAT----CTTTATGTTCTTGTTCATTTCTTATATTCTTTTCCAGATTCGATTACACCTTTGCCTTAGGA-AGTTATTCTAATGATTACTGACAAGCCACTATAATCATTATTAGAACAATGC----CTATCTATTATGAATTTTAAGGTAATGGAATTTCCATTTTCTAAAATATA s canFam2.chr12 4884256 430 + 75515492 TGAGGTTTTCCAAAGGAGAGCAGTTAGATAGCAGTTAGCTTCCCA-GAATTACTAAATCCCAATCTTCAGAATTAAATATTT-------------TATTGGACTATATCCTTGCCATAAG-ATCAGACTGTCCTCCAGGAGACTTGTAATCCTGTTTCAGTTGGAAGACAAACCATTTGATGCTCGCCTTTCACTACTACGGGTGTTTGAAGTGAAATCGTT-GTTATATTCCTTTACCTCCGTTTTCCTCATCTTTTTTCTCTTCTGTCACTTTTTTTTACTCTCTTGGCCATCCTCCTTTGTCTTCGTTCTTGTTTCTTATGTCCTTTCCCAGATTCTATTTCATCTTTGCTTTGGAACACTTTGTATAATGTATACCGATAGACCACTATAATTATTATTAGAAAAATGTTACGCTGCCTATTACGAATTTGAG---------------------TAACATATA a score=15361 s hg19.chr6_ssto_hap7 3647577 311 + 4928567 TAGAGATAAGTTGATATATACAGGCAGCTTACCAATAGGTCCTGGAGTTTGCACTAAAAAGAAATTCAAATTGGCATATTAGTACAGTTATTTGT----AGAGTGTATTTTTCACTAATTTTATCCTAGAAGTGAGGCTTTGAGAGGTAGAGCAGGGGAGAGGAAGTGATATCAGTTATGAGATCATTAGGGAGACTTAATCCAACTATATTAACTATAGAAAAAAGGAAAAAGGATATTTAGCATTTACTGCAATATTTCAGCCCAAGGTGAAGGTTTTTATAGGATCCTTGCCAACCTAAGGGATACTAGGGA s canFam2.chr12 4884719 302 + 75515492 tatatatatatatatatatatataCAACTTACCAATAGGTCCTGGAGTTTGCACTAAAAATAAATCAAAATTGGCATGTTAGTATGAGTGTTTGGATGAAAAATAAATTTTTCATTAATTTTATTCTGGGGGTGGGGCTTTGGGAAGTAGAGTAGGGGA---GAAGTGATAACAGTAATAAGAACATTAGGGAGAACTAATCCAG--GTATGATCCATACACCAAAAGA-----GATATTTAGCATATATTGCAA---TTCAGCCTGAGATGAGGGTCTCTCTAGAATCCTTGTCAACCTAGGAGAGGTTAGAGA a score=8422 s hg19.chr6_ssto_hap7 3647966 195 + 4928567 AGATATTTCTTTCTCAAGGGACTGTTCTTTCACTAAAATCTTTATTTCTGATCAACTAATATGTTCCAGAGGTAGACATTAGAATAGGAGGTAAGAATCTAGTTTCTTCTTCTCACAGCTTCCAGCTTATTGGAGAGTGATAGAGCAGTGACTGCTGCTTTGATTAGCTTTAGAGTCtgtgagcaaagagtcaac s canFam2.chr12 4885243 167 + 75515492 AGATACTGCTTTTTAAAGGGACCATCCTTGTACTAAAA----TATTTCTGACCAACTAATATGCTTTAG-GATAGGCATGAAGGTAGGAGCTAAGGATGCAG-----TCTTCTCACAGCTTCCAGCTTAC------------------TGACTACTGCTTTGATCAGCTTGATTGTCTCTGGGCAAAGGGTCAAC a score=4752 s hg19.chr6_ssto_hap7 3648486 56 + 4928567 aaaaccttcagtttttaatgagaatttggccttcagttgattttctagctctgatc s canFam2.chr12 4885410 56 + 75515492 AAAACCTTCAATTTTTAATGAGAATTTGGCCTTCAGTTGATTTTCCAGTTCTGATT a score=2161 s hg19.chr6_ssto_hap7 3648874 49 + 4928567 aagcctgttatgttatttagcaacactgcttacat-aagaatgatccttg s canFam2.chr12 4885466 50 + 75515492 AAACCTGCTTTCTTACTTGGCAACGTTCTTTTTATCAAAAATGATCCTTg a score=42578 s hg19.chr6_ssto_hap7 3648962 1014 + 4928567 tattaagaagccataactttgggcttccctgagtgtagtgacccatgtatttggtcatattccttacgggatccctgcaggtaatgtgtatggggttcttataggagattttagttcctggtggacctgtggggtttctaagctaggtcagctcc-caattcaactgacagaaggccaaacagaataggtcctaggtggctatgtggac-ctagcatagatcatggcgagtactactcccacagcagagggatagctgttaatgcccttgctggcaaactgtgcttcctgccttaggtcctactgagtagactgttcccagatgagagctatggtaatcttctaagtctgcatggttagttgaatctaaaaagaccatatcttcacccagtgggcattgcaG-----------TTAATAATCCTTCACTTCAGTGTCACTCAGAATGAGAAATATCCACATTTTGATCAATAATCCTCGAACTTTTAACTCTGAATTTTTTTTTTCCTGTGTAAAACACCTGGAAGATGGCTTTCCAGATCTGGATACCCTTGGCTATGAGCAGTAAACCAGTTACACATTTAGATATTATGC-----TAACTTAATAGTTGCTTTGCCTGTATCTACAAATATG-TATCTTTGATTCTGAAGTAGAACTCTTATGATACCTGCCCTCTTGACATAAGTTACTAAATCCTTGGATAGGTGATCACTTCAAA----ATTTTGTTTCTTCAGTTTTTCTATATTTTCTTCCTTCCTTTCCGGTTTCAATTTGTGACTTTTTGTACCTTTATTTTTATTCTCTTTCTCAAC-------ATACTCATTTCCCTTCTTTATTCTCTTATGTGCCAATTCACTTACTCTTTCTGCTTCCAATTTTCTTCCTACTTTTGTTCTTTTTCAATTTTCTCCTATTTATCTCTTTCTAAACTGCATCTTCATTCTGTATCTGTTATTATTTGTGTTACTCATTCTCTCACTTTTTCTCCTC-TAGGCCTTTACTACCCTTTAATCTCAATATTAGAACTTCATTTT s canFam2.chr12 4885938 996 + 75515492 TGGTAGAAAGCCATATTTTTGGGCTTCCCTGAATGTAGTGA-CCATGTATTTGGGCATGTTTCTTATAGGATCCCTGAAGGTTATGTATGTAGAGCTCTTATAGGATATTTTGGCTCC-----------TGAGGCTTCTATGTTAAGGCAGCTCCTCTATGCAGCCTGTGCAAGGTCAA--AGACTAGTTCCTAGGTGGCTCTGTAGATACTTGCATAGACCACTTCTAGGACTACTGCCACAGAAGAGAGATGGTTGATGCTACCCTGG-TGGCAAGCTGTGTTTCCTGTCTTAAGTTCCATTGAGTAG-------CATGGTGAAGGCTGGGATCATCTTGTGAGTCTGCCTAGTTAGTTGAATCTAAAAAGACCAGCCTTCCTTCCAGTGGGCATTGCGGTGTCTCTCTTCTCCATAGCTCCTTACTTCA-TGGCACTCATCATGGGAAATACCCCAGTTCTAACCCATAAGCCCCAAAA----AGCTCTGA--TTTTTTTTTCCTGTGTGAAAAAGCTAGAAGGTGGCTTACCAGTTGTGGATATCTTGGGCCATGAGT-GTAGACAAGCTAGAAATTTAGGTATTTTGTAAAAGTAATTTAATGTTTGCTTTTATTGTATCTATAAAAAAATTGCCCTTGATTCTGGAGTAGAACTCCTAGGACATCTGCCCT-TTGGTATAAGCCACTAAATCTTTAGACAGATAATCATTTCAAATATGATTTTGTTTT----GTTTTCCTATATTTT-TTACTCTTTTTCCACTTTTAATATGTGAC-TCCTATAGCCTTCCTTTTCTTCTCTTTCTCAGCTTTATTTATATTCATTTACTCTTTTTCTTCTCCTGCCT-CCA----ACTCAATCTTTCTCCTTCCAATTTTCTTCCTACTTTTGTTCTTTTTAAACTCT---TGATTTTTCTCTTTTCAGCATGTATCTTCATTC----TCTATTACTCTTTGTATTACATTTTCTCTCACTTCCTCTCCTCATAAGGTCTTTTTATCCCCAAATTTTAATATTACAAGTTCATTTC a score=9726 s hg19.chr6_ssto_hap7 3649976 249 + 4928567 ATTCATTGTTAATAACCTGTTATAACACCCAAAAATGATAGTGGAAAGAA-TGAAGAGTTAGTAAAACTTCAGTCTTAATT---TTATTAACTAACC-CATCCTCTTATTTTTTTGAGAAATGActcctgaccctcagtttcctcatctctaaatatggggataataactgccttactcattgccatttgaatgttgtttagatgcaacaaagtaatgtacgcgagggttaaaaaaacagtagtaagacattat s canFam2.chr12 4887128 248 + 75515492 ATTCCTAACTAATAACCTATTAGAACACTC-AAAATGgtagtggaaagagctcaagagtcagcacaacttcagtcctgatttcattattaactatcctccttcccttattttttt-aggaataacttctgaacctcaattt-ttcatctttcaagatgggtataatatctg--ttatccaccaccattgaaatgctg-tgaggcccaacaaaataatgcataggagagttagaaATCCATTATAAGAATCACAT a score=24320 s hg19.chr6_ssto_hap7 3650634 588 + 4928567 AATTTGCATTATTTTACAAAGTGAAGATAATCTAATAATGGAAAAATTATTTGCATGGAAAGCACAGCAGGAAGTTTAGGTGCTGGGTTCTAAGTCTTTATTAAGTATTGGCTCTACAGAGCTAGATTATATGCTGAAGTGGAAACAGCTTAGGA----CCATCTCTAGCAGGAT--ATTTTTCACTTTGCATTTCAGCTTCATAGTTAATATATTTTTATTGCAGAACCTGGATGAATCCAATCT---GGAGTACTGGGTGAGATTATGAGGTGGCAGAAGGACTTGATCCTTGAGTCCTTGGGCATGAA-TAATTGAAATAAAAATAGATTGATGTTCTAA-----GTAAAGTACTAAAAGGCATTATAATTGAGAATCAGATGACTTACCAATGGTTTTTTGAGAGAGCTCTAAAAAA------AAAAGAGAAAAGAAATCAGTAGCtatatatatattttata---tatactttttatttatatactttaatttGTATACTTTCCCTAGTAGGAATCTGCATCACTA---TTGTCAAGTTCAGCTGCAGTTGAGTAGTAGAAATGGTGACTTTCT------TGCTATGGCAAACTAGTACATATAAGGGCCTCCTCA s canFam2.chr12 4887803 572 + 75515492 GATTTGTATTATTT-------TGAACACAATCTAATAACAAAAAAA-TATTTGCAGGGAA-----AGCAAGAAGTTTAGATGCTGTGTACTAAATCTTTATTACATGTTGATGCT--AAAGCTAGATTATAT--------------AACTTAGAAAATGCCATTTCCTAGGGGGTTAAATTATCAATTTGTATTTAAGCTTCATAGTTAATATCTTTTTATTGCAGAACCTGGGTGAATCCAACCTCCAGGAATTCTGAGTGAGATAACGAGGCAGTGGAAACACTTGACCCTGGAGTCTATGGGTGTGAATTATTTGAAATAAAAATCAACTGACATTCTAAACATTGTAAAGGACCAAAATACATTGTAATTGAGAGTTAGGTGACTTACCAATGGTTTTTTGAGATAGCTCTAAAAAAATAAATAAAAGAGAAAAGAAATGAATAGCTGCTCTCAGACTCTGGAGCCCATAGTTCTCATTTA--------------CATGCTTTTCCTGGTAAGAATCTATACCATTAAACTTG----GCTCAGCTACAATGGGGTAGTAGCGATGTT--CTTTCTCATGGATGCTAGGACAATCTGATACATATAAGGCCTTCCTTA a score=32394 s hg19.chr6_ssto_hap7 3651222 785 + 4928567 TCTAAAAATCCCTTGTGTGATGCTGAGAAGCCATTGGAAATCTGCAAGGGTTCATTCTCCACTTTGTAGTTTGTTTTTATTGGTGAAGTGTACATTCACACAGCTAATCATGACTTACTGAAATGCTAGGTTGAAGAAAA-ATAAGGGTTGAAGAAAA--TGTGAACT-CCAAACCCTTGAAATCCCAACATGGAAACCAGGTAGCGATCCCTAAGATACTGCAGGAAAGTAAAATGCTC-ACTGTGGAGAATCAGAGAGCAAACTTACTGATAGGTCCTGTAGCTCCGGCTG--------------TGAGAGAGAAAGAGGGAGAAAGAAAAAGA-----------TATCAGTATGCTTCACCACTGTGAAGGAAATTTCCATTTCCCAACACTCGCTCT--AGGGAGTATCATAAATAGAAACAACGGGAAGATCAAGAGTTGCTTGTATGGCAAGCCTCAGGCAGGCTCCC---TGCACAATATAAGGGACCTACAGGAATGGAGGCCTCCTCCTGCTTTCAGTGATGGTTGAAAATCTTCAGAGGGTTGGGAAAGACTCACTCCATATTAATCTGTTATGCCTCTATTTTTCTTCTTACATTTTCTTGCCCCTTGCCCCTAGTTTCCTTAGAGACATAGT-TTATTTG-------------------------------------------------------AAAGGTGTACCTTCCCTTGCTGATGGATCATTATGACTATTTCTAAGAGGGCTGTTTTGGTTTATATTTTTAAATGTTAGCCTGTGAGATT-----TCTTAACACTTCGTGCATGGCCTCTTTGGAAACTATGTAATAGGAATGCCAGGGGAGTTGAGAAAGACAGTGTTAAAA s canFam2.chr12 4888536 847 + 75515492 TTTAAAAGTCCTTTGTGTGATATTGATAAGCCAATGGACACATTCAAGAGTTCATCTTTCACTTTATAGTTTGTGTTTGGCAATGGAATGTATATTCACACTATTAATAATGACTTACTGAAATGGTAGGTAGAAGAAAACAAAAAGGCCAAAAAAAAACCATGGACTCCCAAGCCCCTGAAATCCCAACATGAAATCCAGGGAAGGGTCCCTAAGATACTGCAGGGAGTTAAAATTCTCTACAGTAGAGAATCAGACAGTAAACTTACTGATAGGTCCCGTAGCTCCTGCTgagaaacagagtgaaagagagaggaagagggggagaggtgaagggagagacagaTTATTACTATGCTTCATCACTATAAGGGAAATAACCATTCTTCAACACTTACTCTAGAGGGAGTGTCATAAGTAGAAACCCTAGGTGCATCAAGGGTTGCTTACATGGCAATCCTCAGACAGATTCCCTATTGGACCATATAGGAGACTTCCAGGAATGGAGGCATCCCCTTGTTTTCAGTGATATTTGCAAA-CTTTAGAGGATT-GGAATAACTCCTTCCATACTAATTCATAATGTCTC----CTTTAAATTATTTTCTCTT---TTTTTCCTCTCATTTCATTAGGGACTTATTGTTATTTGAATAGTGAACCTATTCTATATGTTGGCAAATTGAATTTAAATAAAATATTTCTAAAAAAGTGAACCTTCCTTTGCTGACAGGGCATAATGACTGCT-------------------TTTCTATTTTTTTATGTTAGTTCATGGGCTTTGCAGTCTCTTTATTTCATTTGGAGATTCTTTGGAAACCTTGTAATAGGAATACTAGAGAAATTGAGAAACA------TAAAA a score=13528 s hg19.chr6_ssto_hap7 3652112 291 + 4928567 CAGGGCAGATCAGGCCCCAAGACCTTGTAGGTCAGATATCAAAGGGACCAGAGTGGAAAAACAAACTTGATACTTACGAATAGGGGCTGTGAATTGCACTGAAATACAAAAAGGAGGAA----AGTGTGGTTTGACATTAATAGAATTTTCATTTTACCAGTATTGTTTCTAAAGAAACTATGAAGCAATTCAACCAGA-GGAGAACAACTACTGTGGGACTGCAGATGATCTTAGCCTGGAAGCTGCATAACCCTCCTACCAGATCAAATCATTCAGCATCCATCT-------------------------------TAAATGAGA s canFam2.chr12 4889383 325 + 75515492 CATGGCAGAGTGGTACTTAAGATCTTCT-GGTGAGAAATTAAAGGAACCAGAGTGGAGAAACAAATTTGATACTTACGAATTGGTGCTGTAAATTGCACTGAAATACAAAGAAAAGGAAAATCAGTGTGGTTTGATATGAGCAGAATGCTCATGCCA-CAATATTCTTTTTAAAGAAATTATGAAGCAACTCGACCAGAGGGAGAATTACTACTGCATATCAGTAGATAATTTTAGCAAAGAAGCCCTATAACCCTCCCTCTAGATTACGTCATTTGGCATTCACTCAGCTGTCTCAAGGGATTGACACTCCCAGGGGTAGGTGGGA a score=53754 s hg19.chr6_ssto_hap7 3652403 1367 + 4928567 AATTTAAGTAA---Ctaaaaataataaatataa-----------ataattaaaataaaC-------------------------------TACAGTTTTAAACATGAATTATTTGGCTTTCCCTTGTCCTAAACTCAGTAGCAATTCAGGATA---------------TTGTGTCTGATTGCTTGGGCATCAGAAGGTGTCAGAAATTTGAATACAATTAAGAAGTATGAGTGAGAAATCCTGCAGGGGTAGAAATGGTAACAGTTAGGATGTGGAGAGGACCCTATATCCTACAGAAGGCCAAAGAACATTAG---AGGAAACAGAAAAGGAACTCACTTATAGGTCTAATAGTTCCAGTTAAAATATGGAAAAAACAAAATAGAACTAATGAGAAAA--------------------TACTGTTTGCATTTAAATTCTTCCTGGGAAAACATCACAAATGTAGACACCAGGAGCAAAATTTCCACTTCAGTGGAGGAACAAATAAAGTTTATAAATGCTTCTTTCTTCATCTTGGAGGATCCCGGTTACTGGTGGAATCTGCCAGCTGGAACTGTGGAGACGCACATTTGGTCAGGCAGTGTTCCTTCCCCTTTCCTGACGGGTGTCCTGCTTGTATCTCAGGAGATTACACAGGCCATTGCCTGTCTTCCAGC-TGGCTAATTTGAACTTGCTTAGCTAGAATCTATAGCCTCA---TCTGAAGGAGACAGTGGGAATTGCTGTCTCTG--TAGTGATTTTGG--CCCTTATTCAACAGAGTAACTTGGCCTGCCATGTA-------AAAGGGAATAGAAACTGCTAGGTTGACTTAAGACATTTATAGGTATGAGTGGTGGGCAAAGGAATTGAGACACTAGACCCACATACTTGTTAATAATGCAGTAACAGTCTTCTTCTTTATGACcacacacacacatacacatacacacacacacacCCCACCACACCTCTCTACACctcataggctataagtgattctctcaccttggcctcccaaagtgctgggattacatgtatgagccactgtgcttggccTAATATGTGCTTTTATGATACCTACCCAGTATTTGCTCTCAAAGTTTGAC--TTGATTATTTTAATAATGTTCCATTTGTGTAAATACTCCAAGAGGAGTAGACACAGGATGTGATATAACATGAGCTTTAATTATCAAATCACTTTTTTTCTCCTTCCTTCAGAGTTAGTCCTGTCTCAGGGGCTCAAGCTCTGAACATCCTCAAAAATGAAGGATAGAAATGTGTTAAGAAGTGAATGAAACCCTGATGAGTTTCATCTTTCTTGTCTTTGGCTTTAAGGTCACTCTTGGTGTGGGGAATCTG-CAGGGCTGGAAAAGCTGGTTAAAT-TTGGACCAAGTGCATTCATCTTTTTATTTCCTCTCTCAGGGCAGAGAATTAAAATCCTGTAGAGcaatggttct s canFam2.chr12 4889813 1327 + 75515492 AGTTTAGGAAAAGTCTACGAACAGTTGTTTTAATTATTTTTATCATAAGTAAGAGAATTTTTTCGTGGGttaatatttatttataattcatattattttaaatatgaattatttGGGTTTCCCTTGTCTTAAACTCAGTGACAGTTCAGAGTGTTTTCTTTCTTTTTTTTTTTTCTGATGCCTTGGGCATCAGGAGGTGTCAGTAATTCAAATGCAATCAAGAAGTGTGGGTGAGACATCCTG--------GAAATGGAAAGAGCTTGGGTAAGGAGAGGTCCC-ATATCCCATAGAAGACCAAAGAGTGCAAAATTAGGAAACAGAAAAGGAACTCACTTATGGGTCCAATGGCTCCAGCTAAAATATGGGAAAAGCAAGGCAG-ACTAATTAGAATGGTTCTTTGGCACAGAAAATTTACAGTTTGCATTGAAAGTATTTTTGGGAAAACATCATAAATACAGACA-CAGGAACAAAATTTCTACTTCATCGGAGGAGGAAATAAATTCT----TTTCTTCATTCTCCATCCTGGAAGACCCTTGTAACTACTGGGATCTGACAGCTGGAGCTGCAGGGATGCA---GTAGTCAGG----GTTCCTTC------CCTGGTGGGT-CACTGTTTGTAACT--GCGGATTCCACAGACCATTGCCTTTTTTCCAACAGGGCTAATTTGAACTTGTTTAATCAGAATCTATGGTCTCGTCTTCTGAAGGAGGCAGTGGGAATTTCTGTCTCCAGTGGGTGACTTTGGCTCCCTTAGTCATCATAGTAACTTGGCCTGCAATATCTTAGCATAAAAGGGATAGAAACT-CTCAGATGGCTCAAGACTCTCATAGATGCAGTTAGTGGGTAAAAGGATTGAGGCACTAGACCTACATGTTTA--------GCAATAATAGCCCTTCTCCTT-------------TACAAACACACATACACACAGACACTTCTCTGTACCTCTTGGGGT--------------------------------------------------------------------------------ACATGTGCTTTAGTGACACTTCCCCAGTGTTTACTCTT---GGTTGACTTTTGATTATTTTAATCATGTTTCATGTGTACAAATGCTCCAGGAAGAGTAGATACAGGGTGTGATCTGTCATGAGCCCTAACCCTCAAATCA---TTCTTCTTCTTCCTTTAGTATTGGCCCTGCCCCAGGAGCTCAAGCTCTGAATATCTTCAGCAGTGATGGATAGAAATATGTTAAGAAATGAATGAAACCTTGGTAAATTTCACTTTTCTTGTCATCGGATTTAAGGCTACTCTTCCTGTAGAGAATCTGAAAGGGATGGAGGAGGTGCTTAAATCTTAGAGCTAGTGCACTCAAC---TTATTTCTTCTCTAGGTATGGAGGATAGAAACCCTGTAGAGTAATGGTTCt a score=48126 s hg19.chr6_ssto_hap7 3653922 1143 + 4928567 ggCCATAAAG-GGCTGGCAAAATCTCAGATCATATAAAAGTCATTGTTTCCATTTACCATTTTTTTTCCTTTT-TAAATCAACTTCCTCTCACTTATTCCTTATTCTCTATTCCCAACCAGTGCTTCTTCCAGAGATACATGCTACAGTTTCATTTAAAATTCTATCTGGATACTTATTTCAGATTTATTCTTTGTTCATAACAGGGGATATACATCCCACACAAACATCAGTGACAGTCT-GGGATCCTCGGTCAGTGAGCTGGGACTCACTGCATGTCACTGAAATTTTCTTGGCGGGTCTTAAGTAGAATGGCCACCATCAAGCCTCTTTCTT-TGAGTGTTACTGGGTTTTCTCACAGGGGAATCTTTCTTCCTTTCACTTGACCATTTTTTGTTCTTCACTCTTTTCCCTTTGCTGTTGAATCTCAAGATTTCGGAAAAGTTAAAGGCAATAGTACTTTCTTACAGAGGCACCCCAGTTTATTAAGATAAGAATAGGGAATAAACAAGGGGAAAGGAATGGACAATTTGTGAAAGAAATAAAAAAATCTAGGAATATGAGTGTCTTACATATTCTAACAGTTTAGTAAAGCAAAGCACATGAGAATTAAAGGGCAGAAAAAGAACTTACTCATGGCTCCTGCAGTTCTGGCTAAAATACAAACA-AAAAAGGTGAGTTTGAAGAGAGCATGACTCAAGGGTGTTTATCTCAGGGAGTTTCAGATCAAGCATTTACTACATATTTGATTTACATGGAAAGGCAGCAAGAAGGTAAGTAGGCAT----------TTTCCTTTTTTCCTTAGGAGACTGTTAAAATCATACTCCCTGCAGTTATTTTTCTTATTCTTAATTTTCATTATCTTCCTGCTGTCAAATCCTTCTAAAGGTT--------------ATAGATAATTTTCCCTGGCCCCAGAATCTTTTTCACAATTTCATTAATTAATCTAGTTTTTATTATAAGAATTTCCACTTTGTTAAATGAAAAAATTAATCAGTCACTTAGA-GGATCTTGAAATCAGCCTCAAATTCCTCACACTGGTAAAAGA----GAGAACAGTAAAATTGCAAGTTTTTCTCCTTTCCTCCATCTTTATGTGCTTTCTCACCACCTTCCCCATTCCTCTGGTAGCAGGCACATTATAGAAGATCAAAa s canFam2.chr12 4891265 1056 + 75515492 GGCCATTAAGAGACTGGTAAAATCTCAAAGCATTTATAGGTCACTGTTTCCATTTATCTTTTTTTTTTCTTTTCTGTATCAAGTGACTCTCACTCAGCCCTCATTC-----------CCAGTTTTTCTGCCAGAGATGTTTGTTGTAATATCATTT----TTCTATATGAACACTTCTTCCAGACTTAATCTTTGTTACTAGCAGGGCTTATACATTCCACACAACCATCAACAGCAGTCTGGGGACCCTTAGTCAGTGAGCTAGGACTCACTG-----------------------------------------------------CTCTTCCTTGCAAGTGTGACTGAGATTTCTAGCAAGGG-ATCTTTCTACCCTTC---TAACA--CTTTTATTCTTAATACTTTTCTTTTGGCCATTGAATCTCAAGACTTTGAGAGATTTAAAAGTGATAGTACTTTCTCAGGAAGG--CTCCAGCTTATTAAAATAAGAATAGAGAATAAAGGAGGAGAAAATAATTGACAATTTGT---------------------GAATAGGAGAGTCTTACATATTCTAACAGTGCTGTAAAGCAAAGCACGTGGGAATTAAAGCACAGAAAAGAAACTTACTTATGGGTCCTGCAGTGCCAGCTAAAATATAAACACAAACAGGTAAGTCTGGCAAGAACATGACTGAAGGATGTACATTTCAGGGAGCTTCAGGTCAAGCATTTACTACATATTACATTTACATGGAAA-GCAGTAAGAGGGTAAGTCTGCATCCCCCTCCCCTCCCCTTTTTTCCTTAAGAGACTCATAAGATCTTATTTCCTGAAATTATTTTTCTTGTTCTCAATTTTTACTATCTTCATACTGTGAAATCCTTTTAAAAGTTTCTGTTTGTTTTTGGTAAACAACTTCATCCAACCATAGGATTTTTCC-----TTTCACCTGTTAA------TTTTATTAGCAGAGTTTATACTTTGCTAAATAAAAAAATT-ATCAGTTACTTAGAGGGATCCTGAAATCAGCCTCCAGTTCCTCACACTGATAAAGGAAAAGGAGAACAGTATAATAGTGAG-TTGTCTCCTTCCCTCCTCTTTTATGTGCCTATAAAC--CCTACCCCAGCACT-TGGTAGAAG-------CTaaaaaaacaaaa a score=5960 s hg19.chr6_ssto_hap7 3655134 206 + 4928567 cagtaaaaaaaGGACTGAGTTGTATATATGGGAAACTTACAAGGAAGTTCTTCAGTTGTTTGTAAACATTTTATACTACCTATAAT-----AAAAATTGAAAAG-------------------------------------------------------TGTAACATTACTTAGATTTAGACTTTCAGAAGGCATGGAG-ATAGACAATCCCATTCCCTCCTCCCCCTCCTCAggtgtggtacaaacagtcttgaggttaaagagct s canFam2.chr12 4892360 258 + 75515492 caaaaacaaaaCAGTTGAG----AAATAGGAGAAACTTACATAAAGGTTCTGGAGTTGCTTTGAAGGTTTTTGCATCACCTATAATGAAAAGAAAATTGATAAGAACTATGAGAGACAAATATTGTGTAAGCaaaaaaaaaaaaaaaaaaaaaGACAAATATAATCTCATCTAGATCTAGACTTTCAGAGAGCATGAAGTGTAGGCAATTTCATTCTGTCCACCCA-----TGTGTGCGGTACAAATAGTCTTGAGATTAAAGATCC a score=3727 s hg19.chr6_ssto_hap7 3655340 79 + 4928567 gagtccgacttttgctattctctagctctgtgattttgggcaagtcactaaatgttttgaacattaatttcctcatctc s canFam2.chr12 4892823 76 + 75515492 gagtcctac-tttgctagtctctagttttatgactat--gtaagtcactaaacctttggaacactacttttctcatttt a score=12673 s hg19.chr6_ssto_hap7 3655419 424 + 4928567 taaaacagaagttgtgtcctctgtcttacctatattgtgaagttgcagtgaaaaatcaggagtaataacagaagggaaagATGAA-AAGTTGTATTAGAAATGTTATGGAAAGAAATATTCAGTAACTATAAATGAATGAAACACTTCGGCAAAGTAGTAAG---CTACTTTAT-----------------ATTTTACTTTTTT-----CTGCTTTAATTTTTCCTCTTATTTCTGACTGTCCTTTGGAAAGTTCTGAGTCCTGACAGCAGAGCATTATAATGTGCACTTAATTCTGTTTTTATTTTTGATTTATTAATTTCTGTTATTTTAATCTTTAAAACAACCCTATCTTCTTGTG---------TACCTTAGTACCTTAATTATGTCATTTTAATCT---------------------------CTGTTGCTTCTGTCTTGAGAAATAACCAATCATATTTTAAG--------------------------------------------------------ATGTTGAAAATTTTGC s canFam2.chr12 4893094 528 + 75515492 TAAAATGGACATGATACCTCCTTTCTTGGAGGCAT-----AACGGCAGTGAAAAATCAAGAATGATAATGAATAGGAAAGCTAACTAAGTTCTATCAAAATTGTTATGAAAAGAAATATTTGGTGACTATAAAAGAATGAAACTCTTCTGTAAAGTAGGAAGTTTTTACTGTGTCTAAAGTATTCAGCTTCAGTTTACTTTTTTTCTACCTTCTCTATTTTTCCCTCTTATATCTTTTTGTCATTTGGAAAGTTCTGAGTGCTGGTGACAGGGCATTTTCTTGAGCATTTCATTCTATT----GTCTTGGTTTGCTGATCTGTGTGATTTCACTCTTTTAAAAAAA---ATCTTTTTGTGTTCCTTAGTTACCTCAGTACCTTAGTTATA-CGCATTGCCCTTGCAGTGAGATTGGCAGTGGTGGTGAACCATTGCTCCTTTCTTGAG-AGTAATCAATCTTATTTTAAGACCTGAAAAGCCTCTTTACTGAAACAAGTGTATAGATGAATTAATTTTCACATGGAATTTCAAAAGTTTTGT a score=9895 s hg19.chr6_ssto_hap7 3655843 481 + 4928567 AATTTTTTTTCTTA----------------------------AAGT-----------------------------------------------AATTGAATAATTTGT--TTCCTTCTTTGTGTATAATTATTTTTCCCTTA------------------------TTTGTTACTTTGCTGTTTTGGGGAGGGAAATAGTAGCTTTCCCCAGAAATGACAGGATCTACCCTCAGCATTTGGGAAGAGATGTCTGTTTTTCTATGTGGTATTTTAGGCCGTCAATCACTGAACTGTCAGTTTCTTGAGAAGGTGAA-----GCCACTCCTACCACCAAATAAAGATAATTTTAAAAGGACAGTTTTCATATACTTAATTTTTTAAGATTTAAG-ATATTAACCTATGGT---AGGAGTGACAAGTATACTTGAGTTATGCATAT-TTaattttgatcaattattaatgactatctggagatgacaagaattttaggatacatgtgagctgagcaggaaagagaatcatgatcaattactgatttctgccacaggcaaaggcatgagcagaaatgtaacacaggtcatatatat s canFam2.chr12 4893987 508 + 75515492 GATTTTTTTCCTTATTTAGTTTATTTCTCTGTTGAACACTTTAAGTGTTGAAGTATTGttttttaaaaaattatatttaGTGAGAGTTTAGTGAGTTGAAAAATTTGCTATTGTTTCTCTTAAAATAATTAAATTTAGTTTATACTTGTCTATTTATGACTTGGTGTTTGCTAGTTTGTTGTGTTTTTG-GGGAAATAGCAGCTTTTCACAGAAATGACAAGAT-----CTCAGCACTTGAAAGGAGATAGTTCCTCTTCTATGTGTTA---TAGACT-----------------------------AAGGTAACATACTGCCATTCCCACTACCAAATAAAGATAATTTACAAAACCCAGCTCTCATATAC--------TTAAGATTTAAGAATATTGACCAATATTACcaggaatgatgaatatagtttagtta---atgtgctaattctgatcaattagtagcaactccctggagaggagaagaattttagattgt---------------------------------attactggTATTTGCCACTGGCAAAGG--TGAGCAGAAGAGGAACATATGGTATGTTTTT a score=42247 s hg19.chr6_ssto_hap7 3656677 1067 + 4928567 GGAAATTCTTGAACTGAGTATTTTGTGGCGTTTCCCAGCTGAAGACAAATAAGCAGGGCAGTGGAAGGTATTTACTTGTTGCCTTACAGAGTAAAGAAGAAGATAAAAAA---AACT-TACGATGTACTTATCCTGCCAAAATACTGAATATTGTGTGT-------------------TTTGGATTAAGGACATTGTCTCTGTGGATATTCTTCCTAATGGGAGCATCAGAGTTAGTTCTTTTAGAGAGTACCACATTTTCCA-TACCAGACAGAATTCCTGATTATCTCTGTGGGGATCGATCACAAACTCAGTTGCATTAAGGGGCCCAGCAGGTCTCATG-ATTGTGAATCTGCTAGTTATAAGGGATA-----------GAGATGGTGAAAAGTCCATGCCCTACCCAGAGGCATTCAAATTCAAAATTTAAAATAATACCATCCTGACGAAACAAAACACATCTATAGGTGGCACTGGGCTAGTG-GTGGCTAATTTGGGAGCTCCGTTTTCAGATGAGAAGAGATTTAAGTGAGCACCATCTATACTTCAACAACAGTGCACTTTGAAATCAGTATCAT--ATGGTTGCGGCCTGAGTTGGGATAGGGCAAGTGAATCCCTTCCTTTTCGTTACTTTAAGGATAGGTATTGGTTGGATCACATTTAATTAAAACCTGTGAGTA-ATaaacttgttcagattgtgaagcatctgga--agttttgatac-cttttagaaaaaataatgaaatatgatatatttaattccatctttgaacaagaaacaactttgctagtaggaaatgtgaccctaatatgCAACCACAAATGTAATAGTCAGTATGAAAACTTTTGTAGGAAAAGCACATAGATCAGAA-AAAAAACCCTGTCCAGTCAGGATTATCT--------GTTTTGGATTTTTTGCCG-------------ATTTCCTCACTTCCCTCCTCCTCATTCCTGTCACAGTCTTCCCTTCATTTAGAAAATGTGTTCTTTTTTTTTTCTTTTTGACAATCAATTGAAATCAGTTTCAGAAGGTTTATTTAAACTTTACCTCTTTGGTTTTCCTCCCTTCTCCATTCATTTTTTCCAGCTTCCCTCACTTCTCTGt s canFam2.chr12 4894495 1060 + 75515492 GGAAGTTTTTGAACAGAGAGTTTTGTGGCTTTGCCCAGTTGAAGACAAATAATCATGACAGTGAAAGATTTCCATTTA----CTTTCAAAGTAAAGAAACAGATAAAAAACTTAATTATAAGACTCGAGCATCCTGCCAAAATACTAAGTATTATGTATAAACATAATAAGATTAAGATATAGATTAAGGACATAGCTTCTGTGGATAGTCTGCCTAATGAAAATATCAGAATTAGTTCTCTTAGAGAGTACCAAATTTTCCATTACTAAATGGAAATACTGGTTGTCTTT----------------------ATTGC---------CTCAGCAGGTCTCGTGAATTGTGAACCTGTTGGCTATAGGAGATACTGGGGAAGTTGAGCATTTGAAAAGTGCACACCCTCTCTAGAAGCATTCAAATTCAAAATTTAAAATAACGTGATGTTGGTCTCCTGGAACACATGTGTGGATGGCAATGGGCTAATGAACTGCCAACTTGGGAGCTCTACTCTGAAAAAGGAAGAGATTTAAGTGAGCACCCTACATACTTCAACAGCAGTACAATGTGAGATTTGCATCACCACCAACTGTGGCCTGGCTTGAGATAGACCAAATGAATACCTT--TTTTCATTAATTTAATCATAGGTATTGGCTGGGTCACATTTAATTAAACCCTGTAATTCTACAAACTAGTTCAGGTTGTGAAGCACCTGGAGTAATTTTTAGATACTTTTAGAGAAAATTATGAAATA--ATG-----------ATCTTTGAGCAAGAAGTAATTTTAATCATTGTAAGAATG-------------ACCAAAAATATAATATTCAGTGTGAAAAATTTTATCAGAAA--CACATAGCTCAGAAGAAAAAAATCTGT-CAACTAGAATTACCTCTTCCTAAATTTTTAATTTTTTTTTGTATCACTTTCCGTAATTCCTTACTTTTCTGCCCCTCATTCCTCTTTCAATCTTCCCTTTGTTTAGAAAATGTGGTCATTTTGCTTTC------GCAATAAATGGAAATCAGTTCCAGGAGACAGATTTAAGCTTCTTCACCTCAATTTTTCTTCTTTCTCTATTCATGCTTTCTACAACCCCTCACTTTTCTGT a score=66946 s hg19.chr6_ssto_hap7 3658030 1642 + 4928567 TCTTCTCTGTTCTTTTATTTGATTAATTTTCAACTGGTTGTTGAAATTAGTTATGTAACGGACTTGAAATTTTAATgagagattaaataacttgcctatgttcaaataaatagtaagtagggagctgggatacaactccagttagcctggctctagagtctgcatgcttaactgctaggcaataGTC-CTCTGTAAATTGAAAA-----TAATTAACAAGCAAATTTATTTTAAAAGTGATTTTTTAGTAGGTCTTATTATATTATTCTCAATTCATGGAGAAATAGTGTATAGTTCAGAT-ACGAAGTGAGCAATAACTTTTTCCTAAGCCTACAGTCAGAGTGTACAGCATAATTTCCTCCCTTGAAGGTAggc----------tgtgattagagagggacat--agtcaagggaggatctgtttaagatggaagaaaatcaaacctgttctataccttaaggagaagcaattaaaggaaggaaaatatttaaagatgtagaagag-agaagaaatgacttctgaagaaataagggggtgagaggatgtggtcaaa------ggcaagaataaaataatttgctt--aagcaaggtggaaggtctcattgtcttagagagggggaaatgtgagaaaggtgggcatgatccagttaagatggctaATGAAGGACAAGGTGGAGAATTATGAGTCTTAAGCCCTTTCACCCTGACATAGCAGGAAACAGGAAATAGTTAAGACAGGGAGAAGTCCTCTGCCTAGTATAGGAGCCCAACAACACGAGAGTTTGAAACAAGAAGATAAACTTACTCATGGATCCTTGAGGTAAAGCTAAAGAACAATAACAATTATTCAAGTCAGTCTAAA-------GTTTCAATAATCCATCAATTTCCCAAAAGTCTTCCCAGAAATAGTGTCCTCCCTCAGGTTATTAGACTTTCCATTCGCCTGTAGGTAGGCTCATAAAGTGGCCACACTTGCAAGTGATCCCATGTCTT-TTCCCCCTTAGACACTATGCAGGAGTGAAAGTTTCAGGGGAATATTCAGCTTTACTATATTTCCAATATTCTGATTTCATTCACCACCTTTCTCCTGTCTTTTCCGTTTCTC----CCTCCCTCTTTCTTTCATCTTTTCAGTTTGGAGAGTCTTCTTTCCCTAATGTGATAGCCTCAAGAACCAAAGAAAGGCAATGTTACAAAGGTTCTAGttttataagaaaagaaaaccgagattgaga-aagggaagggctgtgcctgagtatg-caaaaaattaaaggcagttttagcttccagtttgcttgactttaagttcagcacgttttccTTCATATTCTTTACAATTTTCTC------TTCTTTCT-GAATATTCCTTAA-----ACATTTTTTTCTTTAACGTACTGACCATCTTCCCTCTCCAACATTTTGTTTCTGTTCTTTTTGTTCAGCTCTAAAATGTTTCTCTTGTAAAATAACCTAAATTCTAGGGCAAGACTTGTAGAAGGTTTAATGATATTAACTT-TGATAGTA--ATTTGTACA-AGCTACCATAGAATGAACCCTCACTATATTCAGTGGAGAAAGTCTGGGCATTAGTCTTATTTGTCTTACATTGACTGTTAAATGACTATGCAAAGTTT-------GATAATTCTCACCATCTTTTGGAACTGCatttatttaatttaattaa s canFam2.chr12 4895555 1594 + 75515492 TCTGTTCTGT----------------TTTACAACTGGTAGTTGAAATTAGTTA-----------TAAAAGCTTAATgagaaattaaataatttgcttatgttcaaagacgcagtacatagggagctggcatacaactccaggcagcctagctccagagcatgcATCT-----------GCAACAGTCTCTTTGTATATTTATAATACATTAATTAACAAGTAAACTTATTTTTAAAGTGG-TTCTTAATAGTTCTTATTATACCACTCTCAATTCATGGGGACATAATGCTTATTTTCAATAATGAGGTGAACAGTAATTTATTCCCAAGCACACAGCCAAAGTAAACCATATAATTTCTTTCTTTGTGGGTGTGTGTGGGGGTGATGTAGTTAGAGAGGGACACAGAGTCCAAGGAGAAACTG-TTGGGATGGAAGAAAACCAAACCTGCTCTGTACTCGAAGGAGAGGGAGTTAATGGAAGAGGAAAAATCAAAGCTATAGAAGAGAAGAAGCTATGACTGCTGAAGAGAAGGTGGGGCAGGGAGATAAGGTCCCATGACATGACATGAGTGCAGGGATTTGCTTGAAACCAAGAAGGGGTGTTTCATTGTCTTAGGGAG-----AAACTGTGACAGGTGAGCATGTTGTCAGTAAGATAACTAATGAAGGAGAAGGTGAAGAACGATGAGCCTCAAGCGCTGTTACTTTGACATAGCAGGGACCAGA-------CAAGGCAGGGAGACGTCCTCTGCCTAGTGTAGGGGCCCTATAATACCAGATTTTGA---AAGAAGAAAAACTTACCTATGGATCCTTGCAGTAATGCTAAAGAACAATAACAAATATTCAAATAAGTTTAGAGTTGATGGTTTAAGTAATCCACCCATTTCCCAAGAGTCTTTCCTGAAATTGTACCC--------------------TCCATTCCCC----AGAAGGCACAT-GGGTTACCAGACTTGCA---GGTCTCAAATCTTCCTCCCCCTTGGGCACTATCTAGGAGTGAAATTCTCAGGAGAGTCTCAAGGTTTACTGTATTTTCAATATTCTGATTTCATTCAGCACCTCTCT------TTTCCCCTATTTCCAATCTCCCCTCTTTCTTTTCTCTTCTTATTTTGGAGAATCTCCTTTCCATAATGTAACAGCTTCAAGAAACAgagaaaggcaatattagaaagattctaattttataataaaag---actgaggctgagagaggggaaggtctgtgcctgagcatgttaaaaaaatatatgcagttttcaccttcaatttttctgattcaaagttcagtgcactttctcctgtatcCCATACGTTTTTCTCCTTCCGTTCTTTCTGGAATACTCCTTTAGAAGTAAATTTCTTTCCT--ATATATCGACTCTC-TCTCTCTCTG-------------GTTCTTTTTATTAATCTCTGGAATGTTCCTCTT-TAAAGTGTCTTAAGTAATAGGA-AAGGTTTGTGGAACTTTTAGTATTATTAAATCATGACAGGATTATCAGTATGTAGCTACTATAGAATGAACCC-CACTATATTCAGTGGAAGAAAGCTGAGCATTTGTCTTATTTGCCTTATGTTGGAGGTTAAATTCCTGTGTGAAGTCTGATCTTAGATCATTTTCACCATCTTCTGGAACCTTATTTAACTAATCT--CTAA a score=18697 s hg19.chr6_ssto_hap7 3659865 554 + 4928567 AATGACAGGGTTTAATAAT-TTTTCTTCTGCTCAACTTTT-ATGATTCAATGAGGCTAAATTCACAAACTAAAGCCCTGTGTTCTTGGGCCTTTTAGCCTTAG--GGTAAGTTTTGGTA----GGAGAAGCAAAAAGGCTGACTTTCTAGAAATAGGGCCTGCCTAGAAAGAGGTAAATAAGGAGGACAAGGTCCCTAGACAAACAAGCGTTTATGGTACTGAAACAACCAAGAACTTGCTCAATTCCCTTGTAAATTGTGCTAGATACCCACATCTCTAAGTGCAC---GTCAATTGCTTAAAAGCATCAGCGTTAATCCCCCTTTGAAAAGAAGATCAGAAAAAAAATCCCTCACACTACCCTCACCAGGGAGCATCAAATCCTCTATGCCAGCTGTAGTGTGATTTT-TTCATGGATTGTTTAGGCATCTTATATTTTGGTGGTGTGGCCGAGGCCCAGAATGACATGTAGGACTGATGATGAGCAGAGAAGGTGATTCCCTTTTCCTTTTCTTCTCAGCCTTTGTAAAGACTGAAACT-GTTAAGGGAACTTGGAAGACCTTA s canFam2.chr12 4897149 501 + 75515492 AAGAACAGGGTTTAACAATGCTCTGTTCAGCTCAACTTTTAATAATTCATTTAGTCTAAATCCACAAACTGAAGTCCTGTATTCCTCTGCCTTTCATCCTTAGCTGATAGAATGTAGGATAACAGAAAAGCAAAAAGGCTGACATTCTAAATTTAGGGCCTGCCCAGGAAAGGTCAGACAGGGAAAACAAGGTCCC-AGAT-ATCAAGGATTCATGGCAGAGAAACAACTAGAAATATGCTCAATTCCCTTATAAACTGTGTTAGTTGAACACACAGATAAATTCATGAGGTCGATTGCTTAAATGCATCAGAGTTAATCCCCTTTGAAGAAAAGCTTCAGGAAGAAG--CTTTCACACTGCCCTCCTC--------------------------------TGTGATTTTGGTCACAGATAGTGTACGGATACAGTACATTTGTGCTGCGACAGAGG---------------AGGACTGGTGATGAGCAGGGAAG-------CCATTTACTTTT--------TCTTTGTAAAGGTTGAAACTCTTTAAGGGAACTTTGAAGACAATA a score=48928 s hg19.chr6_ssto_hap7 3660767 1017 + 4928567 AGTCTTGATTAAACTTTCTGTAGTTTCCCTATGTGCTCCCTTCTTATTA---TCTGTTTGCTCTCATTTCTCTTTCCTAAATTGAGAAATAGAAAATAAACTGAAATACGGTTCCTGGAATTGGCACTGAGGAATAATAATAAAAATTCACATCCGTCTGAGTTAATTGGTTTATAAAGTATATAATTCTCACCGAAATCATTTTAGAAAGGGGACCCTTGATTAGGTCTCATTAAGTACAATGGGCCATCAACTActagaatgcttgggtttgaattctggttcctctacttactagctgtgttactctgcct-----gtttttttttttatgcctaagtttattcattttaaaaataggattt---ataatatctactttctaggattattatgaaga--aaaaatgtttaggacagagcctggagcataatgctcaacacatattattatATCATCATTTCAGATTGCAGTCCTTATCTTTTTATACATGTAT------------GGGTAATGGACCATAGTCTCCTCTATCTTGGGCACTACGCTAGTTCAAGATTTTCAAGGAAATAATAGGATCAAGTCCTTTGAGGTCCTGGTTTGAGAGGCCCTTTCTCGAGTTATCACAGTCCAGTGAATTGCCTATGAGAATTATCTCTCAAGAGGGCCTCATCCATTCTGTAGGACCACACGTCATCTTGAGCTTCAGGGATGAATAGCTTCCTGTGGCCCTATGCATCTTTCAGCTAAATACTCTACAT---AACTAATTACTCATCATcctttgagattaatcccaaaatgtgtcatatcctcatttaatttactcaccatccaaagacaattcctcatcttaaggatgcttattatcataatgctttttataattcctaatcggacgttccttccacctctccttactccctaa-----aacacaccatgctgtctgaaattcatatcagcaaattttcctgtatctttaacttctccaaacgttttcttcaccgtcttgctttaaTATTCC----TGTCTTTTAAAATACTGTATCTCA s canFam2.chr12 4897650 1002 + 75515492 AGTCTTGGTTAAACTTTCGTTAGTTGTCCTATGTACTTCTTTCTTTTTACCTCCTGCTTACTC-----TCTTTTTCCTGAATTGAGAAATAGAAAAGAGACTTAAATACTGTTCCTGGAGTTGACACTGAGGAATAATGGCAAAAATCCACAGGAATCTGGATTAATTGGTTTAAAAAGCATATAATTCTCACGGAA------CTAGAAAGGAGGTCC-TGATTA-GTCTTCTGAAGTACAGTGGGTGACCAGATA--------------tttgaatcccagttcctctgattaatagctatgttaccttgcataagtcatttaattttttgtgcctgagattattcattttaaatacaagatttataataatatctatttcataggatttctgtgaagatgtaaagtgcttaggacagagcctgga--aacatactccatacatattattatAACATTGTTTCAAATTGCAATCCTTATCTATGTATACCTGTGTATACCTGCATGGGGGAGATGGACCATAACCTCCTTTGCCTCAGACACTGTGTTGGTTTAAGATTTTTAAAGAAATAATAGAATCAAGCCCTTCGTTCTCCTGGTGTGAGA-GCCCTTCCCCAAGTTACCATAGTCCACTGAGATGCTTCTGAGAATGGCCTCTCAAGAGAGCCTCATTCATCCTCTAGGACCACACAGGATATTAAACTTC-GGAGTGAA----------TGGCCCCATACATCTCTCACCTAAACATTATGTATAACAACTAATTACTCACCTTCCTCTGAGATTAATTTCAGTATGTGTCACATATCCATTTACCTTATTCACCATTAGGGGATAAAT-CTCATCTTAAGGA-GCATATTATcataatgattagcatagctcctagtctgattttcttt---------cttaccctctaatatccagcacaccatgctgtctggaattcatatcagcaaattctcccatatctttaagttctccacatgttctcttcattattttgttttagtaagcccaattgtcctttaaagtactatgtctct a score=43758 s hg19.chr6_ssto_hap7 3663374 1203 + 4928567 TGCAGTGCTCTAAATGATTTCCCCTTTGGAGGGTTTTTATGGCAAGCCTGTCTCACATGGGTCCTCTGCAGATTTTGCTGAAGAAACTGAAGATTTGAGTTTATTGTTTAGCATGTTTCAACTCCCAAATATTTTACCCT--------------------TTCCATAAGTTAGATG---CAAACAAAGTAAAACTAGATAAAACATGTTTTAATTATAAAAGTAATAAAATATTGAGCTTGATAGCTTTCTAAGGGCACCTGTTCACAGTTGTATATACA-------------------------------------ACAAAACAGCCTTATTCATGGGATAAGGTTATGGCACAGTATTGGATTAGCACACTAATTCTGatattttatattaatttacatttta--agattttcaaattacattttaaaaattgaagtaatatatttttaaCATATGCATGATTTTCTAAATTCCTTGGAACAAACATTTTATTTCCAAAGAATACTTTGGATTGGAAGAGTAAATACATTTAATGATGTCCTGggggtagttggacaacctcaggacttggagtccaaaggccagtgtttagaa-cctcagttttactcttttgctagctatatgccttgggtcaagttaaataatatctttaaatttcattttttcctcatgtgtaatatCTGTAAATAG----TCAAGAAAGATGACTTGCTTTAATTACAAACCTCTCCTTGTCCCCTACTCCCATTCCCTGATCTCTTCACAAGCCTCTCTCTTCTTCCCTCCTATTCCTAAGTTAATGAATTTATTACTGTTTTGCTGAAACTATGATTGCCAGCTAAAACCATTTTAATCCTCTCTTTATTCTTTAATCGGTGGACTTCTCATTCTTCGAAGTTCTCATTAATTTTAGACAAAATGCTCAATGATGGGGAAGGAAAAGGAGGTGAGGGACAAAATCTCAGCAGGGTTAGGGAATGTTCCTTAGTTCTGTGACACACTAAAGAGACTTAGAATTTGGAAATATGAAA----TTTCCCTCCTTGCTCTCCTAAAAGTAAATATAAACAAAAAATTCATGTGGTTGTCTGGCTCAAAAACTATCCAtttctttcttttttttttttt---ttttGCAGGGGACAGGGCAGGAATGAGTATCAGAACCAGGAACGCCTGGGAGCACCAAACCCTTAGTGTCAGTTGCAGCTCAGGGGGATAGGGAATTAGCCATCTCTTCCATTGCTGCCAGCCTGACTTGGGGATGCCTCAA s canFam2.chr12 4898652 1165 + 75515492 tgcagccctctgaggaatggctatttt------tttttatctcatactcatgtaccacagggcct--gcaaatattgcaggAGAAATTAAAGATCTGAGTTTATTATTTAGCACATGTCAACCTGAAGATATTTTACTCTGTTCCTATCATAAATTATCCTTCTGTAACTTAATTGAATTAAAAAAAGCAAAACAAAATAAAAACTCTGTTGATTATAACAGTAATAAAATATTGAGCCTGATAGTTTTCCAAGGTTATCT--TCA-AGATGTATATATATATTTTTTCTTACATATACATATTATGTATCTATGTAATAAAACAGCCT-ATTCATCAGATGCAGTTTTGACACAGTATCAGACTGGCAAAATAATTTTGAGATTT-ATATTAATTCACATTTTTTTGCATTTTTGAATTTCATATTAAAAATTGAAGTAATATCTTTT--GCATATGCATAATGTCCTAAATTTCTTGAAAC------TTTTTTTCAGGAAGATACtttaaattgaaaaattaaatatttttaatGGTGTCCTGgggatagttggacaagcacaggat----actcaaaagctcggtgtttagaaacctcagtttttc-attctatgaactatgtgcctttgggtaagttagacaatatcctcaa-tgtcactttt--cttacctgtaaTAACTGTAAATATGGACTCAACAAACATGGCTT-CTTTAATTACAG--------TTCTCCTTTACTCTTATTCCCTGCCCTTTTCACAAACTTCTTCCTTCCTTCCTCCTGCTTCTGAGTCAAAGAAGATATT-TGGTTTTGCTGAAACTATCATAGCCAGCTAAAACCATTTGAATCTTATCTTCATT-TGTAATCAGTGGACTTTTCATT----------------AACTTCAGATAAAATGTTCGATGATGAG-AAGGAAGAAAAGATGAAGGACAAGG-CTAGGCAGAGTTAAGGCAC-----------------------AAAGGGAATCAGATTTGAGAAAGAGAAAAAAAACTTACCTCTTTGTTCTCCTGAAAAGAAACACAAA---AAAGGTTATGTGGTTGTCTGGC---------ATTTTTTTGTTGCTTTTTTTTTTTTTCATTTTTG-------------------GAGTATCAGAACAGGGTATCCCTGGAAGCACTAACCCCTGAGTGTCAGTCAAGGCTCAGGGAGGTAGAGCATTAAACACCTCCTCCATTGTTACCATTCAAACCCTGGAACACCTTGA a score=25794 s hg19.chr6_ssto_hap7 3664939 716 + 4928567 GAATTGAAGAAAAGTAAAGGAACTTACCAATACTTGATCGAGACAGTGCTAAAATAAAACACATCAAAAGAAGAATGAGTTCTGTTTGTCCCAGGGAGAACTTAGA-TGCCATAGACACTATATTGCAGAAAGGTTGTGGAAAAGAGGATAGAAATGAGTCACAACTTATTTCCTGGTATCAATTGCAATGCAATGTGGTGAGCAGCTGGATATCTACATATGGATTCCAATA-----------CTTTTGT------------------------GGTAAGGTGGGACTACAAGATCTATGCAACCTGTCTTTCAA----TTTTGGTAAGAGAATAAAAATATTTTTGGAGATTGCTAGTTTCTCAATCTGAGGACATTTTTCTGTCCCTATAAGTCTTCTTTCATTGGTGATTCTGCTGC-TCTGTTC-------TTTCCTTCTCTACCTTTCCTCCACCTCTTCCTCTCTCTC---CTTAATTTTCTGTTTTCCCTTTGTTCGAAAAGATTTTTTGTTACACCAAACAATTACCACCTAACTGCTTCAACA-GGGGTTTCCACTTTCCAAAATTCACTTGTGCCCTATGGAGGTGAAGAATAGCAAG-AGACCAAATCAGGAAGTTCTTGAATAATATTAGAAGCTAAAGAGTCAAAGTAGTGAAAGTATTTAGAACCTCGGGGCTTACTGAAAGGGTGCTTGCTATTGAGGGGAATATTTCATCCTCTCCTTTAAGTGATT----ACTTTGAACATGGTATTTTTTAAAG s canFam2.chr12 4899820 729 + 75515492 GAATTGGGGGAAACTAAAGGAACTTACCAATACTTGATCGAGACAGTGCTAAAAGAAAACA------AACAAAAATGAGATTTTTGTGCTTCAGGGAGAACCTAAAATTCCATAGCTACTATATGAGGAAAAGGTTGTGGGAAAGAGGACAGCAATGGGTCACATTCCATTTTCTATTATCAGGTGCAATGCAATGTGGAGGGCTGATGGATATCCAGTTACAGATTGGGGTATAAATTTTAGGTTTTTGTATAATTCTACAGTAATTCTGATAGGGCAGGGTAGGATTACAAAACCTATGCAATTTATTTTTTAAGATCTCTTAGTAAGATAATAACAATGTTTATGAGAATTGCTAGTTTCTTAGTCCATGGAAACTTTTCT-TCCTCCTGTGACttttgtctttccttatcctgctgcttttgttctttttgttttctttctctacttaccttcctcctcttcttctctctctattttgtttctcttttttcccctttgtttGAAAGATCTTTTGTCCCA--AAAGATCTACTACATAAGAGCTTCAACAGGGGGTTTCTACTTCTCAAAAGTCA-TTGGGTCCTATAAGGATACTCAATAACAAGAAAACAAAATCAGGATGCTCCTA---GATATTAAAAGAT--AGAGTCAAGGCAG---------------------------ATAAAAGGG-GCTTGTTGTCAAGATGGATA-TTCACCCTCTCCTCTATTTACTTGGAAAAGTTGGGCttaataatttttaaag a score=8532 s hg19.chr6_ssto_hap7 3665655 216 + 4928567 TTTATAAAGTAGAGCTGAGCTTGAAAACTAAAAAGAGAAGTAATATATTCAAGAAAAATATATCAAGAAGGAACCCATATTCTTGGTAATGAATGAGAAGTTTTACCACCCATGTGATACCTTATTGGGGGACTGAGGCTTAAACACCTGATCACCAGCAGAAATCAAGGCCATAGGCCTCATGCATTGTAAGAACCTGGGATT-ATCTTcctgttt s canFam2.chr12 4900743 209 + 75515492 tttaaaaCATAAAACTGAACTTGAGACCTAGGAAGGGAAG-----TCTCCAAGGACCATCTATCAAGAAGGAAGCCATCATCTATATATCTTAAAGGAAGGTTCATCACCCAT---ATATCTTAATGGGAGGTTGGCTTTTCAACACATGATCAGGAGCAAAAATTAAGGCCATAGGTCTCATGCAATGGAAGAACCTGGAACTAATTGTTCTGTAT a score=6983 s hg19.chr6_ssto_hap7 3665871 139 + 4928567 aatatgttaggttacatggaaaaagggaattaatattgcagatgaagttaaagttgctaatcagctgaccttaaaataggatgatgattttggtatatctgagtgggcctaatataatcacaaagatttttaagagtgg s canFam2.chr12 4901680 138 + 75515492 aatatgttaggctacatggcaaaagggatctaaggttgcagatggaactaaggttgctaactagctgaacttaaatagagatt-ttatcctggattatctgtgtggactcagtggaatcataagggtctttaaaaatgg a score=10151 s hg19.chr6_ssto_hap7 3666018 232 + 4928567 gataaaagagagtaagagaaagaggtactacagtggaagaagggcagaatggtgtg-atgtgaggacttgattcatttttgttcactttgaagatagaagaagggag-ccatgaaccaaggaatgtggccagcctctagaagctgaaaaagcaaggaagcagatttgttcctagaacctccagaaagaatgcagtcttgctgacaacctgattgttgtccagggagacatatat s canFam2.chr12 4902820 224 + 75515492 gattgaaaggagtcacagaaaaagatgtgaccatggaagaaggccagagtgatgtgtatgggaag-cttagtcaatttttgttagttttgaagatggaggatgggggaccatgtgccaaggaatat---------ccagaaactgaaaaagcaaggagactgctttgttttcagaatttccaaaagaaacacagtcctgctgccactttgattttagcccagagagacatgtgt a score=31124 s hg19.chr6_ssto_hap7 3666255 1070 + 4928567 atttataacctatggaactgatagataataaatttgtgttgttttaagccattaagtttgtggtaatttgttagagcagctatagaaaactaatacaACGTGGTT-gactatttccccaaaattcccttgtagttaggtgtggctatatgcttgagttctagccaatctaatgttgttagaagtgatatgaaa-gtcatccaggcttgtttgtaaa-gtcatccactcatgatcttcaagcttttttctttctgttcacttaaggtggactaacatgatgaacttaggagccattatttgaagatggtggagtcattagttaagatgaatttgagtgcctaagacactgctgagagaagggccatccgccaatctggaattcctgttttggacttctcataagtaagaaataaaattctattagggaaaaccactgagattttaagatCCG----------------GGGCTAACTTAATCAGTGCAGATAAGAAATATAAAAGAGAAGTCACAAGATCTGAAAGATGGAAGGAAAATCTTTACATACAT-----AGTAATTTTAGAAGTAGAGACTACAGTTTGTT-----GTTAGATATAGA------TATAAATATGGGCAAAATTCATAGCAATTAAAGTTAA-ATTTTTCTGTAATTAGAAAGATTGAGTCCACAGAATGGAAACTCTTGAATGTTTATGAGTGTGAGATTAACTTCATTTATCCTGCTCAGAGTAAATGGAAGCATTCAGGATTTTCCATTGTGGGTGTGAGATTCACTTCATTTATCCTGCTCAGGATAACCTCACACTcataaaaagttaatctcacacctataaacattataatta-aatgcagaacacaaaaataaagagaatcttgaaaatatatttacttaggaacaaacatcaaactagtgatagattcttatcaacaataataaataataaacaacaagcaaatggaataaatcttcaaagtacagagggaaaataatgttcaattctatacctagctaaattttcatttaaggctgaaggtgaagtaaagctattttcagccatatgaaggcttagaaaatttttcacatacatgtagagtt s canFam2.chr12 4903230 907 + 75515492 atttctaacctatgaaattaa--aataatatatttgtatcattttaagccattaggtttttggtatttggttacagtagcaatagaaaactaatgcaATATGGTTTGACTgtttcctc----------tgcagttagggg-aactatatgagcgagttctagcaaatctaatcttgaaaga-gctatgtgaaataacacccaggcttccccataaaagccttgaactcatgatcttc------------TCCTGAACTCTGCCTGTG----------------TCAGAAGCCATTAGTTGAAGTTGGTGGAGACATAGGACAAGATGAACTTACGTGCTTAAGTCATTGCTGAGAGGAAGGCCAACTACCAATCAGGCATCCCTG------ATTTCACATAAT-----AATATAATTTTGTGAAT-AGAACCACAGAGATTTTAAGATTTATCGATTATAGGGTCACAGACTGATGTAATTAATAAAAATGAGATAGACAAAGGAAAAATTATTAGTCTTGGAAGATGAGAGGGGAACCTTTACATATATTTGATAGTTATCTTAGAAGGAGAGACTATGACTTGTTAGGTGGATAGATATAGACATAAGTATAAAAATGGAATATATTCATAGCAGTTAATGTCAAGAATTTTCTGTAAACAAAGACAG-GAGTCCACAGAATGGAAAATCTTGA------------------------------GTCCTGAGCAAGATAAATG-----------------------------------------------------------------------------AAGTTAACCTCATACCCAGTTACATCATAATTACAATGAAGAATGCAAGAA-AAAGGGA---------------------------AAATATTAA---AATCATAGAtcattatcaacaataaaaagtgccagaaaa-----aaatgaaataaatcttcaaaatcttgagagaaaaaaatgtt-aactat-tactcagctaaactctcatttaaggctgagggtgaagtaaagctattttcagtcagacaagggcttagaaaAACGTTCACATGCACGTGGAGCC a score=10816 s hg19.chr6_ssto_hap7 3667325 304 + 4928567 taaagaaccagtaaaggattgtatttgggcaagaaatagaagagaaaagacacaggatgtagcaaataatgttaagcaaaaacaatgctgaaatattgttgtaagtctaagtaataattaattgtgaaaataaataatta-ttttgtctttaaaaagaataccac-aaacaagatggagaatttggaaagagtagtttggagggaagatggtcaaataaaagttattatctagtcttggaagaag------ataccgatta-------tctttaatttttaaagaaaaattaaatagtacacatgttacaaatatcagg s canFam2.chr12 4910330 296 + 75515492 AAAAGAATAACAAAAGGACTATACTTGGGTAAGA---AGAGAGAAAAGGACACAGGATATAGCAAACAATCATAAGAAGACAAAATGCTGATACATTTTTATAAATCTA--TTACTATAAAT-----AAGTAAACAATTATTTTTGTTCTTGAAAGTCATACTATGAAACAACATGGAAGATGTTGAA------------AGGGAAGATAGTCAAA-AGAGGTTATTGTCTAGTCTTAGAGGAAGAATAATATACTGATTAGGTTTTGTTTTTTTTTTTTTTAGAAAAATCAAGTGGTATGAATGTTATAAATGTTAAG a score=36812 s hg19.chr6_ssto_hap7 3668336 925 + 4928567 TATGACAAGAAAATGGTTTtaagaattggaaaaggaaactcaagattatcagattttgcagatgacatgattttttacatatagaattcaaaagaatctgaaaattattagaactctaagagcacagcagggtggctagatacaaaatctactctcaaatatacaacatataacttatattccaacaataattatttgtaaaatcca-tgtagagagatagtattaacatccgaaacaaaaaacaagtatgtgtataagaattaatgcagcaaaagacatgcaagacctttctgaagaaaattatattacattattgaagggtatatgagaaaatttgaatagtaggca----accatgttaatgcatgggaataattgattttacaaattaatctacaggctcaatgaaatttcaatgaaatcctaatatgactcata--gattttgagaa---attatgaaattcttgtgtaagagaaaaggtcaaagaatagccaacacatttctgaaaa--agaacaaagataa--------tgtgctattttttgt----aatgttataaagttttagtagtgaaagcaatggagtattggttcagtaaaagacaaaagatcactggaa-cagaaaataaaatccacggaaaaacgaaatatataagatgaagatggcattacaaatcagcagagaaagaatgcaccagtcaataaatctagttggaacaagatgagacgaaatccctctagttggttttccagatgaaaggaaaattagatctcac-ctgtattattactaaaatcactcaccaaaaccaaaaaacaattaac----aaagccccatttggattaaagttctat--atgtagaaagggaaatttcaaaactattaagagaaagtattagataaaatctttgtgatacccagataaggccaaagaaactaaaaagcagaaac s canFam2.chr12 4913924 892 + 75515492 tatggacagaaaaag--tttgagagctggaaa-gaagactcaaaattgttagtttttgcagat---aggactttctgcatacaaaatccaagagaatct--aaattattggaagtcttagagctcaacagggtggctagatacaaaatctactctcaacaataaaacatacaatttatacagcagcaatcattgtctgtaaaatccaacagaaaaaaacaccattcacaacagaaataaaaa-caagtatgtgcataggaattaatctaacagaagatgctctagaccctt-tagagaaaattatagaacattattgaggagcatataagaagatttgaataatagatacattatcattttaatgcataggaagaattgattttataaat----ctacagacttggtgaaattctaaagaaatcttactgtgactcatacagatttaacaaatgaattgtaaaatttt---gtaagaatagaagcctaagaataggcaaagcatttctgaaaagaacaacaaagATAAAAAAAAAATGTGCCATTCCTCATGATAAAtgtcataaagctttagtaatggaagcaattttatatctgttgagcaaaagacaacagtttcctgaaaacagaagagaaaatccaggggaaaactaagtata--agataaaagaggtattacaaatcaatgggtaaagaatgcataagtcaat----------gggacaa---------------------ttagttttccaaa------gagaattaaacccctctctatattatttataaa----caagcaaaaaaaaaaaaatcccaaacgcaaaaacctccatttggattaacatcctgtctatatggacggagaaactttataactattaagagaaagtgtaggataacatttttgtaatatccagacaag-----aaaggccaaaaaacaaaacc a score=100674 s hg19.chr6_ssto_hap7 3669261 2405 + 4928567 tctaaaagaaaacaagagattgacaaattttattacaataaattgtgtggtgctgggggagagtgagta-gaggccttctaaaagtcaagagacagcataaaaatttaaagctaagagacagaattgga------tgagataattgca------gatatttaacataacatataaaagttgatctttcataataataaagaattactacagatcaataac-taatagataaatgggtaaagtaaatgaacaagcaatttatatagggtgaagcctcactagctagtaagcctatgagaagatactcaatttcaggagtgagcagggaa-tgcagattttaaaaattgtatacgtattcaagtggcaataatagaaaaatatgacaaaatctgggattgttactaatgcagagaaattggaaatatttatttatttttgtatgcctc-tatgtaactaccaaggagcttaattaa----tagctactaaaatttaaaatatgcataaattacataaatgctcatatacaatgtgaacactaatcctacttcagggtatgtaccccggataaactcttttc-catctacttaaggattgtctttgcagcattatttgtgatagcagaaattggaaacattgagaatgcatcggtagtagaaataatagaaaaatattgtatattcataaggtggaatattattcaacaaagtgtataacctgg-----------atttcaaaactaca---ttttgagagaaaaatgcaaatcgtaatgatactatcagacagatgccattttagtaaaatt---------aaacattaaaaaaagatactatattTTGTTCAGTGATAGGTAGAGACTATA--AATATATGTAAATAGACtta-aatatttaaaatatattaataaGCCTTTGGGAAGAAGGGA--GTGGAATATGT-------------------------CTATGATA------ACTTGAGAAATATGACAAGAATATTATCAATTTGTCACATCTAAGGTGTGA-TATACAAGTGttaattatttttatacttaattttaaaaaCTTTCTTAAAAGAGA-------AAAAATACAGAAAAAATAGGGCTTGCAAACCAGATGACAGTAGAATTGAAAGAAAACCACAAAGCACTTACCTAGAGAGTTGGTTGATGGTGCTAAAATACACACACAGAAAACATGAGGTGAATCATGAGAGTTTGGATCCCTAATCTTTACATATCAGCTTCAGTTGCTGTCACCCCCTTCTCAGGAGTTAAAGTCTAGGCCCCGGGAGTCATCACTGATCTGGTGATGGGTACTGACAGCCACTCCCACCAGCTACTGCATATGCTTTCCATCTCTAAAAATGGGTTTAA-TTTTTAGTAGGCAGATGCCATTCCTAC--------------------------TGCCCTAATTCCTCCCtcccttttttccctctctattttcttctctctctcccttttatctttattactttccttttctcttgctcatcacttctattgttttcctttTCTC-------------------------------------CCAGC--------------------------------CAGATCATTCTAAACCAGCACTAGAAAACTTTATCTATTGCTTAGTATTCATATGACTTGACATATGACAGGATTTCTCTTTCCTCCAAAGCATTTACAATCTAGGGAAATGTTACTAATAGGAAGCAAATTTTTGTTAAGAAGCAAGATAATACTTACTGTAATCTCTTTTGGATCTCTCTGAAAACATAAACAAAAGAAAGAAAAATCAATTTGGATATTCTATTTCTGTAGTTTTGGTATCACTACAGAGGATTACCCAGTCAACACCCTCAAATATCCAGTTAGGCAAGAAACTGGAGACAAAATCTCCTCATGGCTTAATTTATAAGTTTAATGACATTAAAAAAACAGGCAGAGTTTAATTAAGGTAAATACATGTAGTGAGAAGAAATAATAAACTATACATG----CAAACATTGAAACAGAAGAATGTA-TAGTTATAAGGTAAGTTGAGGTCAAATAAAAGAAGGAATGGCAAAATATTTACTCAGCTGACTGAGAATTCAAGTTCAGTGACAATATGGCAAATTATAATGAATGCAAATGTGTATATTGATTGCGAT-----------------TGAATGTGCATCCTATGATCTAAAACTTGTTTCTTAGTGATGTCATGGAAACAGACTTTCTAAAAGATCTG----GAGACAAAGCAAATTACATGGAAAACTAGTCATGTTATCACTGTTGTTTTCATAAAAGTGTAAAAGTAAATAGTAATATTGATACTTTGTAGTTGATTTAAATTATGTTGAATCATAATATCATTTGCTATTTCACTAAAGTATAGTTAAAGATCTACTCAGAAATGTGAAGACAATAGTATTTTTTTTTCAGCTTCTTTTCTGAAAATGAGTGCTCTCCTTCCATACTTGG-----------CAGTCATTGTGATGGGAATTAAGTACAAAACAC---ATTCTCTGTTTTATAATAATGTTTCTTGTTTCTCATGGTTCTATGGGGATTTTAAAAAc s canFam2.chr12 4915091 2497 + 75515492 tctaaatgaaaataaaagattggcaaat---actacaactaattgtgggtgggtggggaggaggaagaatggggacttctaaatgtcaagagacaccataaaaatgtaaaagtaagagatagaattgcaaatatttgcaatatatgcaagagaagatatttg-ca-aatatataaaagactagctttcataattataaagaatttctaaaattcaataacctaatagataaatgggtaaaCTAAATgaa----------------------gcctaagtaggtagtaaacatatgagaagatactcagtttcagtagtaagtgggaaagtgcaaatt--aaaaattttacac-----taagtggcaataatgtgaaaatatgacaaaatcaggg-ttgttaataatgcaaggaaatgggaaacttttacacattTTGATGTGCCTCCTATGTGAATACCATGGAATTCAATTAAATGACAACTAGTAAAATA-AAAATGTGTTTAAGTTACATAAATGTTCATACGCATTGAGA---TTAATCCCATTTCAGTCTGTGTACCTTGGATAAACTATTTTAGAAACTACATAAGGACA--TTTTGTAGCATTATTTATGATAGCAGAAATTAGAAATATTGAGAACATGTCAGTAGGAGAAAGAATAGAAAAA----ATATGTTCACAAACTGAAAT-TTAACAATTAAAATATGTAACCTGGTTTTCTGTATACTTTCAATACTACAATATTTTTTTTGGAAAAAGCAAGTTGTAATGATGC----AGAATAGTGTCATTTTAGTACAATTTTTACATGAATACAT-ACAAAACAATACTATATATTGTTCAGTGATGCTTAGCAATTATACAAATAGATGAAAATAAACTTACAAGATTTATGGTACATTTTTAAGGGCTTGGGCAGTGGGGAAAGTGGAATGTGTGGAGGGATGAGGACGAAAGGGATTTCTATATTATCTGTCACTTGAGAAATATGACAAAAA--------ATCTATCAAATATAAGATGTGAATTTACAAGTGTC---TATTTTTGTACTT-----TAAAAACTTCTTTGAGAGAAAGAAAAAGAAAAATACAGAAACCACAGAGTGTGCAAACCAGATA-----------GGGGAAAAACCATAAGGAACTTACCTAGGGAGTTGGTTGATGGTGCTAAAACACACACAGAGAAA-CATGAGGTAAATTGTCAGGATTTGGATCCTTGAC--TTGCATATCAG--TCAGTCACTGTGACCTCCT-CTCAGGAGTTGCAGCCCAGGCCCAGGGCGAC-CCACTGACCTGGTGGTGGGCACCAGAGGCCACTCCCA------ACTCCATC--CTTTCCATCTATCTAAAAGGTTTCAGCTTTTTAGTAGACAGATGCTATTCCTATGAAACTCCGTGGCTTACATTTTTCTTTGTCCTCATCCCTTCC-CCCtcctttcctttcttttcctctccttttctcctcctttatttctatcacttcctttctctgtcacttatcattttcttttcttttcttttcttttttttttttttGCATTCCTCTCAGTCAGTTTGGAAACCAGCAGACCAAGTTTGGAAACTGAGTTTGCTAATGGCAGACTATCCTAAACCAGTGCTAGGAGACTTT--CTATTACCTAGTTTTCATATGAACTGAT--------GGTATGCTCTTTCCTC-AGAGCATTTACAATCTAGGGAAATGTTACCAATGGGAAGTAAATTTTCATTGAAAAACAAGAGAATACTTACTGTAATCTCCTTTTGATCCCTCT-AAAACACAAATAAA-TCAAGAAAAATCAGTTTAGATTTTCTATTTCTGTAGTTTTGATATCATTACAGAGGATTACCCAATTAACACCCTCAAATATCCAAGTAGGCAAGAAGCTGCAGGCAAAATCTTCTGATGGACTACTTTATGAGTCAAATGACA-TGAAAAAGTAAGCAAAGGTTAACAAAGGGAAAT--ATCTAGGGAGAAAAAATAATAAACTATGCCTGGAAAGAAACACTGAAGTGGAAGAACATGTTAGTTATAA--TAAGTTGAGGCTAAGTAAGAGGAAAAAAAGGCAAATATTTAATCAGCTGATTGAGAATTCAAGTTTAATGAAGAGATGGCAAATTATAATGAATACACACACCtatatacatatacatacatacatatatagatatagatatGCATCCTATAACCTAAAACTTATTTTTTAGTGATGCCATGGAAAC--ATTTTCTAAAAGATCTGGAGAGAGACAAAGGAAATTATAT-GAAAACTCATCATGCTATCATTTTTATTTTCATGAAAGTGTAAAA------------ACCAACACTCTGGAAATGA--CAAATTATGTTGCATGATGGTCTAATTTGATATTTTACTAAAGTATAAGTAAAAATCTACCCAGAAATGTAAAGACAATATTGTTTTCTCTC--ATCCCCTTTCTGAAAATGAGTTCTTTCCTTCTATACCTGAGTATAGAAATCTTATCACTGTGATAAG-ATTAAGTCCAAGACACAAAATCTTCTGGTTTACGCTAATGTTACTTGTTTCTCCAGGCTCTGTCAGTATTTTAAAAAC a score=15345 s hg19.chr6_ssto_hap7 3671993 499 + 4928567 GGAAAATACCACTGAAATGCCGAACATTTTAATATGCTGCACTTGAAATTTGTTATAAAAACTTTCATGCGCTGCACTTAACATTTGCTAGAAAAATACTAAGAATAAATTTA----ATTTCAAAAAAATTTTGGAATAACCATGGCAGCTTTTAT-------ATGTGATATATTTAAGTTAAACTAAACTTTGAGTACTAAATTTCATGTACCTAAACTAACATAATGACCTTACCTAATATTAATATCTTCCTGCCAGAAGATTTCTATAGTCTCAAGTTGACCAG--------------------------------------------------------TACATTTATATTCCTATGTCTAGAAATAATGGAGGGAAGACTAGCAGGGCGTGGGAACCTAGAAACTTAGGATGACTGAGATTTATA-GGTTATGTTAGGGGGACTGGAAAGTCAGAGAAATA----GTCATTTGGGTTTATGAATTTTAAAGTATGACTTATTGAAACAACAATAAAATGTTTACTGATTCAAGTTTTTCCTTAAGAATGCAAGGG-AGCCCAGATT s canFam2.chr12 4917588 515 + 75515492 AGAAAATACCGA-AAGGCGCTGAACACTTTCATGTGCTGTAATT-ATATTTGCTGTAAA----------------ACTTAAT------------AACATTAAAAATAAATTCAGTGCATTTC---AAAATTTGTGAATTATCATGGCAACTTTAATCTATAACATGTGATATATTTAAAT---ACTAAAACTTAAGTACTAAATTTTATACACCTAAACAGAC---ATGACTTTGCTCAATAT-----TTTTCCTGTCAGAAGAT---TGTAGTCTCCAGTTGatttatatttatatttatttatatttatatttatatttatatttatatttatatttatatttatatttatatttatatATCCTG-AATGATAGAAGACAGCCTGGT-GAGTTTGGGAACTTAGCAAC--AAGATGACTGAGATTCATAGGGCCACCTTAGAG----TGGGAAATCAAAGAAATGAGTTGTCATTTGGCTTTATGAATTTTAGATTATGGCTTATTTAGATCACAA-AAAATGCCTACTAATCCAAG-TTTTCCCTAAGAATGCAAGGGTAGCCTAGAAt a score=46403 s hg19.chr6_ssto_hap7 3672493 1129 + 4928567 GAAAGATACTAAGATTGTAGGCTTGTACACTAAAGATCTGTAAACAGGAAATTAAAAATTAAGATATTACTAAATTACATAAGAATAAACTCTCTGACTGCCTAAAAtttggaattagacaattctaaattcctatccaggtt--gtcacttccaagtcctgtggccttgggc--aagtcattaatgtttttt----------------------aagcataagtttctcttctgtaaattagggataacaata-GTAAATTACTTT-CTTCATTTAAGAGGTACTTATTaaggatctccctcgctgtggtgaggtgaatagactataagaaggcaagaggagtatcaaggaaacaaggtagg------------------aggcaagagatattggtgtttgggcaaggattgtcatggtggtggaaggtggtttgatttggagtataatttgaaagcatcagagatgggatttgatggtggattggatgaagagagt--aggaaaggagttaaatatcattccaaggtagatagtctgagcaattaggtgaatacaggtgctagcaccagtgtgtagaagggattagggcttgggttttagacatgctaagagtgagatgcctttcatatatcTTCAGGACACGTGTGCtatgattatataggttggctcactgcacaaagggttaagggaactgaaatccacaacagtgtctctggggtggggctgcattcacttgcaggaaggaacaccttttcctaatatgcaccaaagcaacctgtaggcta----ctggaggccttgGACAGCCAGGGAGGGATTTTTGGGTAGCTCATCTTTGTGTGGTTGAcagggttgtttgtagatattcaatattaataaaatgaaaaaatgctcaccagaatgactaacatatagtaggtgctgagtacatgttaattctCCTCCCTTCTTATAGTGTGTAGTTTTATTTTGCTTATCCGTGTACCCTTAAATTCCTAACACTGAGGTAGCTTCTTGCACTGGTTAAATCTGGTATTCTGGTAGACTGTTACT-GGAGAGGTT---TTTTCCCAAGAAATATGAGATGTAAATGACAACAGTAGACAACAGCAGTATTTCTTTGCACCCTTGGAATTTTATTGCACAAGTCATATCTTA----ATGTGATGAACTTTTAAGAATTT s canFam2.chr12 4918445 1137 + 75515492 GAAAGAAACTAAGATTGCAGACTC-TACACTAAAGTTCCAT-AGCTGGAAATTAG----TAAGGTATTACTAAATCGTGTAAGAATAAATTATATG---------AAATTAGAGTAAGATAATTCTAAACTTCTAT-CAGGTTGAGTCACTTGCAAGCCCTGTGGCTTTGGGCttttttcatttttcttttttttttttttttttttcatttttCATGCTTACATTTCTCTTCTGTAAATTAGGGATAATAATGTATATAGTACGTTAATTGATTTAAGAACTGCTTATTaaggatcatccttac--tgataacaaaaataaactataagaaggca-----agtat-aaagaaaccagttaggggtcaggtgaagtacttcaggcaagagatgttaatgcttgggctaagattgtcatcatggttaaaagtgatctaatttggaatataatttggaagtagtgggtatgggatttgatggtggattgtatgaggagagtgagagaaagaagttaaa---------ggaatagatggcatgagcagttgggggaattcagatactactaccggtatgcagca-ggattaggacttgggcttcggatgtgttaagagtgagataccCCTCCTCTATCTTCAGGACCACTGTATTATGTTTGTGTAGGTTGG-TTGTTGCACAGAGAGATTTGGGGACTGAAATCC-CAGCAATCTTT---GAGTAGGGCTGCATCTGCCTAGAGAGAGGAATAC---TCTCTAATTTGCACGAGAGCAACCTGTAGGCTAACCTATAGAGGCCTTGAATAACCACAGGGGCTTTTGGGGGTAATTCAT-TCTATGTGGTTCACAGGGTCATTTGTAGATGTTAA-----AATAAAATG---AAATGTCCCCAAGAGTGGCTAGTACATAAGAGATATTGGGTGCAT-TTAATTATCTCCCTTTCCTGTCGTGTATAATTGCATTTTACTTATCTGTGTATCCTTACATTTCTCACATTCCGATAGCTTCTTGCACTTGTTTAATGTAATGTTGTAATGATGAATTATTCTGAGAAGTTTTGTTTTCCCAAGAAACATAAGATGTAAATGACAACAGTAGAGGAAAGCAGCCCTTGTTTGTGCTCTTGGAATTTCAGTACATGGGTCGAATTTCAGTACATGTGATGAATTTTCAGGGATTT a score=17503 s hg19.chr6_ssto_hap7 3681384 319 + 4928567 TACTTACCTCGGTTATCACATGAAGTGTCTAGAGAATTGAAGAAAAATTATAAGATTCTTAATTTCTCATAAACAGACTCCTATATTAATTTCTTAGCAATACAATA--------ATTTACCACTTTGTGTTGAATATGCATGTCGGGATCCTAAAAGAGAAGATAAAAACATAATGAGATTTTACTTCAACAAGTGAGTCTATATTATTT-TTTGTTAGATAGAAATCTGTTTACCTCTTCCTCTTTTAGATCTCTGAGAAGAAAAATCTTTTAGGAAAGAAAAAAACATATTAAGTTTACCAACAGTTCATTAAAAAATAAGTTTA s canFam2.chr12 4919582 320 + 75515492 TACTTACCTTGATCATCATAGGAAGCATCTAGAGGATTGAAGGAAAAACATAAGATTCTTAATTTCTCATAAATAGATTTCTGTATTAATTTCTTAAAAATTCAACATCTAATTTATTTACCACTTTCTGTTGAATACAAATGCCGGAATCCTAAAAGACAAGATTAAAACATAATGAGATTCTATCTTGACAAGTATGCCTACGATATTTACTTTTTGGGTGAAAATCTGTTTACCTCTTC-----TTAGATCTCTGAGAGGGACAATTTTTTGGGGGGGAAAAAC-CAGATAAAGTTTATTAACAGCTCATCAAGCAAT--GTTTA a score=14236 s hg19.chr6_ssto_hap7 3682019 330 + 4928567 ATCATTAGTCTCAATCCAACTACTAAAAGATTTGCTAGTTTCCCAGATATTCCCATTTTCTTTAGGTTCCATTTCAGAAAATAAAGAGGGAATGCCATGGCACTGTGCTCTTCACTCTTGTTGTTCATGATAGATGAATCATAGAGGTAAGAAGGAGAAGGATGGACCAAGAGTCCAAGTGTGGGGCATGGACAGCAAGCGAAGTGACTGAGTTACTTTCTCTTTTCTTTCCTCAACTCTCAGGGATCTATATGCTTGTAGCgtgtgtgtgtgtgtgtgtgtgtgtgtA-----------------ATTATTTCCACATCCACAATCTCATAACCTTATAGTTCTGG s canFam2.chr12 4919902 333 + 75515492 ATCGTATGTCTAAGGCCAACTAGCAGGAT-TTTTCTATTTTCCCAGATGTTCCCATTTTCTTTGGATTCCATTTCAGAAAA----GAGAGGATGCCACAGCTCTTTGCTCCTCACTCT-GTTGGTCATGACAGATGAATTATAGAAGTAAGAAGAGGAGGTATACATGAAGAGGCCAAGTGTGGGGCATG-ACAGCAAGCAAAGTGACCAAGCTGCTTCCTCTCTCCTTTTAGAAATAC----AAATCTTTATGCTTGTAAAGTGTGTGTGTATGTGTGTATCTGTGTGTCCCTACAAAAGAGGAGAGTGCTTTGGAATCTAC---TTAGAAACATTAGATTTCTGG a score=3297 s hg19.chr6_ssto_hap7 3682683 71 + 4928567 aacctgaatttg---atatccagctccctcctcagctaggtgaacttgagtaagtctc--aatcttttgagcataa s canFam2.chr12 4920432 76 + 75515492 aacctggatatggatatatccaactcctttttttgctaggtgaatttggttaagtctcttaaacttttgcatacaa a score=84102 s hg19.chr6_ssto_hap7 3682754 1848 + 4928567 atttcatcttcttaaatggggataa--------gctttgtttacctcTTCTACTGTATGGCTTTCAAAGTGTATTTTCACATATACTATTCCATTTCA----------------TATTCATTTTATCCACATTTTAAACATCCAGGAAATTGTTTCGGAGCGGTTCCTTAACCTTTCTAATATCTTGGAAGTAGACAGAAGATGGAAATGAATTCTTTTGATGGTCTTAAGAAGGAGAATTATTTACCTTTTCTGAGAAAAATGCACAA--------------------TTTTTCTTGAGAAAGAGAGA-------------------GAGGAGTGATAAGCATTTGAATATTATAAAAACGAAAGATATGCTGACTCAACAAATCATGCTCAAATGGAGATGAGTTGATTCACACTCTAAAGAGTATATTCCTTCATTAACTGTCTAGTAGTTCCTAATCTATTTACCTCTACCATCCTCATAGTCCAGAAGTCTAGCACCTAGAAAAAAAGGGAGAGCA-----CATGATTTTGCTTCTTGATTATTAATGAGGCTTTATTTAAGACTCTGAGAACTAATG-TAAACATGAACTCCTAATGGTGAATAATGATGTGAATTAATTTACTTTGCAGGAACTAGGAATTGTGCATAAGCTACAAGAGCTGACGATGATAAGTGACTGTGTCAATCACCAATTTTATAATATTAGCCAGGCTAAATGATAG-TCAGAAGGAGTTTCAGAGTTTCTTTTACCTCTTGATACTTCAGCAGCTAGTCTCCTGGTTTTTGCCTCATACCAATCCTGTGCTATCTTTCTTAACAACTTTGGCATCTCTCCAGATCTTTCCATGGAAAGTCTTCTTCAATTCTTCACATCCTGAAGTTGGTACTCTTCTCAATCATAATTACCCTAACTGTGTTCACTCTCGTTATTCTAGGATACATTATATTTTTCGGTCCGGCCACTTCACTAAGGCCGTCTTCATGAATGGATTTAGGCTTTTTACT------------GAACCATCTGTTCCAGTGCCTGAACTGGAACAGTTCTCTGTTGCTGCTCTCAGACCACAGGAAGCATCTGAAGGGAGCCTCAGAATTATGCAGGCCTACCCAGTATTA-ATTAATTCTCCCCAACTCCAGTTTGGCATTCAGTACTGCTCAGAAATCTCTGGTAGATTTCTCCCACTCACTTAGAAGCAGTTCAGTTCATGCAATGGTgcactatgcaaggttctggaaacacaactgtaaacaagacagatttcattcctgacttGTGAAAATTCTATAATACT----ATATTTATTTTTCTCATGAGTATAAGTACTTACTTTGTTCTGAACTGTATCTGGAGATATGCATTTCTGTGGAAGAATTAGGCAAAA-TGTTTTTATTAGTTACTTAGGAGAAGTGTTCTTCCTC-TGATCAAACTCTTCTCACTCTAAGCTATGCTTCTTGCTTACCAAGGTGGTCCTCCTGATATAATGCATTGTTG-TTCTCACCCATTTTCCACATCTCCCATCAGCCCTGTTTTACCTATCTTTTCACACTACTTATGCTTTGAGGGCTCACAGGCATTGAGGATGGGAAACAGGGAGGGAATACAGCTGATTAGAAAGTTGTGGGAGAGAAAC--AGAAAAATCCAGGAAAGAGAGACCTTATGGCATAGAAATAGGTCTTAGCTTTTATGAGCTCCATCTCTATTTCATCGACAAGTACTACTCTGTATTTGTCTCTTCTTATCATCTCCCCAA-ATTAAGTCACTAAAAGTCTCCAATTCTTTTTATATAATACTAGATACTGGTGTTTAGCAACATACTGTCTTCTCACTTCTATTTTTTTTTTTTTAAACTCAGGTAATTTCCCTTGGAGCTCAGGTAATTTTCTTTTAAAATATTCTTATTACTTTTGCTAAACTC s canFam2.chr12 4920695 1869 + 75515492 atttcatcttctagaatgaagataataataTAAGTTATGCTCACCTATTGTGCTTTATAGCTTACA--GTGTcttttcatgtatactattcagtcttgatgacgacccatgaattatatactttatctctattttatatatctaggaaattgtttcagagaagtttcttagcctttccaagatcTTGGAAATAGG----AGCTGTAAA---ATTTTTTTTAATGTCTTAGGATGGGGACATATTTGCCTTTTCTGAGAAAAatacacaaatctatcatctatctatccatttatctatacacacacatatatacacatacacacataGAAAGATGGATTGACAGTTGGATATGATCACAGCAAAAGATATGCTGACTTAACAAATCATGCTCAAAGGGAGATGAGTTTCTTTGTTCTCTAAGGAACACATTCCTCCATTAATTCTGTGGTAGCTCCTAATCCCCTTACCTCTACCATCCTCATAGTCCAGAAGACCAGCACCTGGAGAAAAAAGGAGAGTGTGCTTCATGGTTTTGCTTCTTGAAAAGGAGAGAGGCTTTA----AGACT--GAGAGCTAATAATAGAAATGAACTCTCAGTAATGAATAATGATGGGAATTATTTTACTTTGCAAGAACGAGGGACTGTGCACA----------GTGGGAGCAGATAAGTGACTGTGCCAGTCACCAGTTTCA---------CTAGACTTAATAGTAGGTCAGAAGAGGCCTCAAA--TTGATTTCCTTCTTGGTACTCCAGGATTTAG-CTCCTGTTTTTCTTTTCTTACTAATCCTGGACTATCTTTC--AGCAACTTTGATGTCTCACTAGACATTGCCATAGAAAATCTGCATC---TCTTAACATCTTGAACTCAGTG---TTCTCAGTCATAATCATTTTAGTTGTTTTCACTCTTATTATTCCTGGCTATCTTTGATTCTTCTACCTAGCCACCTTGCTGAGGCCTTCTTCACTACCAGATTTAGACCTTGTATTCCATTGCTTGTGGTATCTGCTGTTTTTGTGACT----TGGTA----TTTCTGTTGCTGCTCTTGGACCACAGGCAGCATCTGAAGAGAGCCTCAGAATCATGCAGACCTATCCCCTATTAGATTTTTTCTGCCCAATTTCGGTTTGGTACTCAGTATTGCATAGAACCCTTTGGTGGATTTCTCTCAGTAAATTAGAAG---TTCAGTTCATGGGATGATgcattatgcaaattgctggggatacaatggtaaacaagacagatttcaatcctggcttatggaaattccattATGCTTTCTATCTTTGCTTTTTTCATGAGTCTTAATACGTACTTTGTTCTGAACTGTATCTTGAGACATCAATTTCTGTGGAAGAATGAAGCAAAAATATTGCTATTAGCTACTTGTGAGAGTTGTTCTTCCTCCTCACCCAACTCTTCTCACTATAAACTCTGCTTCTTTGCTCCCAAGGTGGCCCTCTTGATATGATATGTTACAGATTCCTACCTCTTTTCAGCACCTCCAGCTAGTCCTGTTCTACGGGTACCTCCACACTAATT---CTCTGAGGGCTCATAGGTACTGAG-ATGAGAAATAGGGAGGGGATGCAGCTGACTAGAAGGGAGTGGGGAAGATACTGAGGAAAATCCTGGAAAGAGAGATCTTGTGGCATAGAAATATGCCATTGTCTACATGGGCCCCATCTCTGTTTGATTGACAAATACTTCTCTGTGTTTGTCTCTTCTTATCATCTCTGCAGTATTAAGTCACTAAAAATCTTGAATTCTTTTGGTTTAATACTAGCTAACAGTGTCTACTAGCACAGTGTCTTGTCTTTTCCATTTTTATT-------GCTCAGATCATTTCCCTTGGAGCTCAAGTGATTTT-----AGAATATTCTTATTACTATTGCTAAATTC a score=103739 s hg19.chr6_ssto_hap7 3684917 2469 + 4928567 TTGACATTATTGATAATGTAAACCTTGGGAGTT-AAAAGTGCAGGGACAATCACTAATAGGTCAGAGATTCTTTGACTCAAGTATTGAAACAGATTCCCAGAATATTGGCAAAGTCTCTAGCTGTTTGATGAGT-GAGATGAACTCAGACTGAATCTTGGCATCCCTCCCTCCATGGTTTTCACAGGAAATCTTCATTTTGACTCATTATTACTCACCACTTTGCTTACGTCGTGCCCATCTTGTTAACAAAATAGCCAGGATGGCAAGTCCCAGTAGAGTCAGGATGACAGCCAAAGTTATTTCTGAAAACAAAAACTCACCTGTAAACATGCTTATTTAGACCAGGAAATTACCAGAAACAACTTCTGATCACCTCTTAC---TATCCACCAGATAGACTTTTTTTTCTTTCCCC--TTTCTGCTACTTCAACTCCTTTATTCTTTTATTTGCCGCATATTACTGTCCTCACATTCCCGCCCCTGCCCATTTTTAGCTCTTACATTGGT-TCTTTGGTCGTATACTAAGAACCTCAGATGCTGTGTACCCTTGGTTTAGAGTTGGAAATCTGACAGATTTCCTCCTCAGTTGAACCCTTTACTCCCCAGGCAGGAAGAATGTTAAAGGGAATCAGTggtctacgaagctatccactggggtatggggaaaatattagaacttctattttctgtgtaattttaactcatacctttaaagttgcaagattttctgtgtgtgtGTGtatatatatatatatatatatatatatatatatatGGCTATAAATAAGATTTATAAATATACTTTTATAGGCAATGCATACTCAAA-ACATTTTTATGAGTGAGTGATCAAAAAACTTTCAGCACCTTGACTGAAGGGTGCTGACTGAAGGTGGTTTTATTAATGAAAGCCACAGCAAAGGACAGAAATTTCTTGTCAC--ACAAAAACCTTTCAGTCATCACTTGCCAACCTCCTGATGATAAGATGGATATTTGCGAGGTTTGTTATTGTGGTTAGTAGGATAAAATATGCTGGGATTGCTTAACTTGTGTTTGTTTATGTGTCATTG---------ATCTGCATTCAAT------------TGATGTAAGATAGAGTCTTGCAGTCATAGGAGAGAAAAATCTTAGACAATATCATATGGTTATAAAGG------------------GCAGTGGCTATGAAGGATCGGGGgagaaaaaaaaagaa---------aacagagagagagagagaaaggaaagaa-----gaaaaaaacaaCCATAAAACTGCCTGTGAAAGTAAAAACTC-TGAAGAATATTGAGCTCTGAAAGACTAGGAAAGTAGATTACACCCACATTAAGACTACTTCAAACGAACAATAGGTGAATCCATCTCAAGATATAATAACACACCTCCAACCAGGGCAGATTAGGCATTTGTCTACTGAGTCTTCTAGGTGTTTGGTCCTGTGAGAAAATTCTCCTGCCAAATCAACTTTTGGAGATTTTCTTCTAATGTACCTCTAAAATGAACAGCAAGTAGTCAATATGCCCTCTATTATGTGAAT-----TTTTTTTTCTAGTGTTAAATAACTCATTGGGGAGGAAAGGATAACTAGATGGTGTACTCAGTACTACTGTATATTCCTTTTCTTCCTTT----AGTGTCTGAAATGCCCTGTCTATAGGGCAGTTAGAAGATGGTCCACCCTATTAATAGGGAAAATGAGAGGAAATCATTATTTCTGAGTTGAGGCAGATTATATAGAGTGACCATGCTACAGGAAGTGAGATAATGGGCTAAGGAATTTTTCCTAGTGCTACGGAGGATGGTTATTTTCTTTGTTCAGTTTAAACTCTAGAAACCAAAGGAGAAACCAGCACTATCAGCCTAGAGCTTAGTTAACTGTGGGTTGTTTCCCCCAGGCTTCCAGAGGAATCAATAAGAGTGAAAGAAAAAATATTGAATTTGAAAAGGAAGCAGGCAAGGAAGATAAAGCAGTTGTGTTAAAGTCCCTAAGTCCCTAAGAGGAGACTCCTGAACTACTAGAGTTGAGGAAGCCTCAAAGAGGGAGTTAGTCCATACCCAAGACTGTCATTTTCCATGTATTGTCTTCATCAGGTCTCGCATCATCTGGATTTCTTTGTCAGAGAGAGATCAAGATAAAACGAAAAACTCAAGTTCACTGTTTCTGAGCAATATGAACTTGGGTGTCAGGGAGGCCCTTGTAGGCAGAGATGCAGAGGATCACTGAGAAATTGTGTGGAGCAGATTGATCAGACCTAAGCAAATGATGGGAGTGTGGCCTGTGAAGGTTCTAGAATCTGTGTCATAACAGAGACTTAGAACATTAGTGAGGCAGGAGAAAAGGCA---GAGGATCAAAAGGCTAGGAAGATTTAATAATGCTTTGGAGGACCTTGAACTTGTATAGGATACTGGAAGGGAACTCACTCTTTCTGGGCTTTAGAATTATTTCTAGTTTTTCAgagatttttaaggccagagattgtatatcattaatctttgtaact s canFam2.chr12 4922583 2405 + 75515492 TTGACATTGTTGGTAATG--AGATTTGGGAGTTCAAAAGTGCAAGAGGAATCACTAGTAAGTCAAAGATTCTTTGATTCATGTATTGAAATAGATTCCCATAATATTGACAAAGTCTCTAGATATCTAGTAAGTAGAAACAAACTGTGACTGGATCTTA-TATCCCTTCCATTGTGGCTTTCACAGAAAATTTCCATCTTGACG---TGTTACTCACCATTTTGCTTGCGTCGTGTCCATCTTGTTAATAAAATAGCCAGAATGGCAAGTCCCAATAGAGTCAGGATGACAGCCAAAGTTATTTCTGCAA-CAAAACTTCACCTGTAGGCCTGCTTATTTAGACCTGGTCATTATCAGAGACAACTTCTGGTTGCCTCTTAACTGTTTTCACCAAATAGACATTTCTCCTCTACCCCCTTTTCTGCTACCTGAACTCCTTTCTTC---------CCTCATCTTATTGTCC-------------CCTACCCATTTTT-----TTATGTTGTTCTTTTTGGTCAGATACTAAGAATCTCAACTGCTGTATATCCTTGATTTAGAGTGGAAAATGTGGCAGATTTCCTCCTCAATTGGATCCTTTACTCTCT--GCAGGCAGAAGATTAGAGGAAAACAGTAATACACAAAACAAGCCACTGAGA------AAAAAAATTAG---TTCTA--------ACAATATCAAA-CATATATT----------AGTATACTAGTATGTA-atatatataca-atatata-atatatatacaaacatatg-------------tttatatatatatgtatatatGGAATGTGTGTGCAAATATAGTTACATGAGTGAGTGACCAAAAATTTTAGAGGCTCCTGACTGAA----------TGAAGTTGGTCATAATAATGAAAACCATAGCAGAAGACAGAAATTTCTTACCATTGGGAAAGACCTTTTAGTCATCATGCACAAAGCCATTCATGATAAGA--GTTATTTGTGATGACTGTTATTTTGGTTAATAGAAGAAAGCATGCTGGAACTGCCTGAATGATATCTGTGTATGTGTAATTGGAGAGACAAATCTTAATTAGATACCTTGCAAAGGTTATGAAGAACTGAGACTAAGGAGCCTTTAGAAGAAGAAaggcagacagg--cagacaggcaggcaggagggagaaaaggaggaaggaagtggggaagaagg---gagggaaagagaaagagaagtaggaaggaaggaggaggaagggaggaatgaatgaatgaatgaaCAAAGCTATCACAAATCTTCCCATGACAGTGAAAAATGGTGAAGACAATTGAACTATGAAGGGCTAAGAAAATTAATTACACCAAGATTAAGACTGCTGTCAGTAAGTGATAGATGAATTCACCTCAGGATGTAATGACACACCTCCAATTGGGGAAAATTGGGCAAATGTCTATCAAATCTTTCAGGCGTTAGATCATGTGAGAAAATTTCCTCAACAAGTCAGCCTTCTGGGATTTTCTCCTAATGAATCACTAAAATTAATAGTAAATAGTCGGTTTGGCTTCTTTCATGCAAGTCAGAATTTCATCATTGATGTGAAATAATTCTTAGGGGA--AAGGGATAACCAGGTTGTGTACTTGGATCAA------GCTCTGGTACTCCCTTTGAGTAGTGTCTGAAATGCAGTAGCTATTGGACAG----AAGATGATCCACTCCATTTATAAGGAAAATAAGAGGAA------------GAATTGAAGCAGATTATAAAGTGAGGA-GTATTACCAGAAGTGAGATAGCAAGTTAAGGAATTTT-CCTATTATTCCAGAGGATGGTTATTTTCTTTTACTAATTCAAATTCCTGAAACCAAAGGGAAAATCAGTGTTCTCACTCTTGAGTTGAGTTGACTGTGGATTGTTTTCCCCAGACTTCCAGAAGGATCAGTGAGAGTGAAAGAAAGGATATTGAATTTGAAA-GAAAGCAG-CAAGTAAGGTAAAGCAGT---GTTTCAGTCTCTGAG-------GATAAGACATCTGAGTCAGTAGTGTCCAGAAAGCCTTAGAGAGGGAGTCAGTCCATACCCAAGACTGCCATTTTCCAGGTATCGTCTTCAGTGGGTTCTGTGTCATCTGGATTTCTTTGTCAGAGGGAGATCAAGATAAACGGAACACTCCAAGCTCACTGTTTCTGAGCAGTATGAACTTGGATGTGGGGGAGGCCCTTGTAGATAAGCATGCAGAGGGTTGCAGAGGAACTATATGGCTCAGGTTGATCAGACCAAAGCAGACTACAGGAGTGTGGTCTATGAGGGTTCCAGAATCTGTGTCATAACAAAGAACTAGAACTTCAGAGGGGCAAGAAGAAAGGAAGAGGAGGACCAAGTGGCTGGGAAGATCCAG-AATATTTTGGAGGACTTTAATCTTAT----GATTTTGGAAGGGAATCTACTCTATCTAAGCTCTGGAATAAGTTCTAACTTTCCAGACA-TTTTGAGGCCAGAGATTGCGTTTCCATCATCTTTTACACT a score=27833 s hg19.chr6_ssto_hap7 3696599 964 + 4928567 atggaatgaaaagtataaaagaaatgaaatatgtgtccacaatagacttgaaagagaatgttcatagcaattttattaataatagcccaaacctagaaacatcc-aggtatccatcagcagaaaaatgagtggaaaaaactgaagcatattcataaaatgaaattcaacttaaaa-tattaaaagaa-----------catacacagca---------atatacatgatctcaaca---ttatattgaatgaaaaaaattagatacaacagagcaaatagtgtattattaccatatg-aagttaatgaaaaggcaaaactaaa-ctttgatgatgggaatcagacta---------------------ctggttgcctgtga-aaaattaatgttctttgtttggattgaggtatgaattacttgggtgtattcaattgttaa----------------tacttataatctgtgcttgtaaaaatacatgtctgtaaattacacttcaaTCATTTAAAAAAGAGAGATTACAA-AATTTTGAGTTTGAGAGTAGAAATTCAAGCCTAATCTTCTTGAGCCTTTTAAGACTACTGGGTTGAAAGGGAGACAGACCCTAGCTTACTTTATAACACTGATGATATGGATTTGAGGTGAGAGAAAAAAAATATTTTTCATCATCCTAATGAAATTTATGTCTTCTCATATCCACAATTTTTTTCAATCTCATGTCTTTGGAAAATCCTGCTTCGCAAATATGGAAGAGAAAGCTATACCCTCCCCTCTAGGAATCAGAGGTTGTCCTAACGTCCTCTTTCACATCATTCTCTTCTATAAACCCAGTGTCCTTAAAATTAGTTAGGCCTATAGTCAAGTAAGACT------GTAATAATAAATATAGTAAGTGGAACTGCCAACCCTGTCTTTCCTAATCTTTTGAATTAGCAAAATATCCTTTATCCAAAGGGAAGAGAAGAAATCCTGTGTCAGGAGGACATAATTGCTATCTCTCCAGAAAAGAATGCCAATCCATGT s canFam2.chr12 5038145 927 + 75515492 ATGAAAATAAAATTATaaaataaatgaaat--gtgtccacaatagactttaaagtgcatgtttttggcaactttattcataatagcccaaacctagaaacatcccaaatgcccatcagcaggaaaataagtgggaaaa-ttgtagcatattcatgcaatagaactcaactgaaaaatataaaaggaataaactattgacatatacaatagtttataccatatacatggtctcaacaacattatgttgagtgacagaaattaaatacag---------tagtgtattattacagtttataagttcttgaaaaggcaaaactaaaacgttggtgatagaaattagatctgaaaaaaaaaagaaattagatccgattgcctgggggaaaattgatattctatatcttgattggaatatggattatttgggtgtgtacatttgtcaacatatgtcaaagtttatacttgaaagctgggcttataaaaatatatgtctgcaaattatacctcaatcattacaaaaAGAGGTATTTCAACAATTTTTAGTATGAGGGAAGTAACCCCAGACAATCCTACT--AGACGTTTAAGACTATTGAATTGTAAGGAAGATACATTT---ATCATTTTATGACATTAATG-TATGAGTTGGAAGAGAGAGAAGAAAATTATTTTTCATCCTTTCATTGTAACC-ATGCCTTCATATATCCACAATGTCTT-CAGTATCATATCTTTG-AATATTTTGCT-CACAAATATGGAACAAAA--------------------------------GCCCTAAA---------------ATTCTCTCCTAGGAATATCATGTTTTCAAAAGAAGAAAATCCTATTTTACTACAATATTCCTATAGCAGTAGGAAATATGGAAAATATGATGGTC---CCTCTATTTTATG------TGAGATAG--AAATAT---------AGAAACAGGGAGAAAAAGGTTGATTTAAGAGAA--------------------AAAAAAAAGCAAAGCACTGT a score=44178 s hg19.chr6_ssto_hap7 3697900 1532 + 4928567 CAGAATAAAGGTGAGGGGGTAGGTAGGCAGGATTAAACAAACAAAAAACACTGTCCTCTGTGAATGATCGATTCAACCAAATT----AAAGACC----ATGTATCAAAACCCTGCACCATTCTCTctactgacaatcacactcttgcatagtcc---ctcacactatagcaggagtggtctg--------tatgaccagttgacaacagcagaaattatggtatgttacttcctatattaggtcatgaaa-acattaaagtcttccttcttctcccccacttccctcccctcttctctctctctcatcatctgttctgggggaagtcagctgccaaatcttaaagacactcaggtggctcagtggagaggcctattggtgaggaactgaagccttcagtcaacagccatgt-aatgagccttcttgtaaagagaccc-ccaaccccagtcaaggcttcagatggctgcagccccagccaatggcttcactgcaacctatgagagactgagccagagctacccagctaagctgctccaaaattcctgacctgtaagataatatgcaattgttgttttaagccactaagtttccaggtaatttgttac-cagtaataaataattaattcaCTAAGAATCTGTCATAAGTGTGGCTTCTCTCTGGATTATGATTACTCACTTACTACAGTGGTTCCCAAAATGCAAGCCTAAG--CTGAATCCTAGTAGTTCTTCTTTGAATGCAGCAGCTTTGCCCTTGATACATGACTTTCTCTCAGTTCAATTGTATTAAATATTTGAA-ACACAGAAATGCCTGCCTGGACCCTCACCATGAATCCCCATCCCTTCTGATACCGGAATCTGGTTGCTATTTCCAGAACATTTCTCATCAAGACATTATCCTAACTTATGGTTTCATTGCTAATTCATAGACACTTGTCCCATTATAGAGATCTAGTGATTTCCATGTGAGATTTTTGCCCTCACACATGCCAATTCCCCTTGTTCTACCTGTTTACCTAACATCAATCAGATGTCAATAATGGAAAAGAAAAAAATCAAGAAGTAGGAGCTTAAGACACTGTGTACTGGCAGGGCTATTGCTTATTTCTGCCGTACCCCTCTTTCTTGTCATCTCTTAGTTCAGATGCCTTGGCCCTGTGCATAG-----------------------TGTGCTCTATCTCATGAATCTGAAGTAAA--GAGAATCAAAAGGAT--GAAGAGCTTTAAATCTTTTGACAACATTTAAGAGAGAACAGGAAATTTTCCTCCCTTTTCCTGGAAGTCTTTGCTGATGAATGAAAAATTGGGTTTCCTTTATGTAACCTGTCGATGGGGAGGCAAAACTTGTCCAGAAAAAATAAAAATGTTCTCACT-GTGCTATGTTACTAGAATTGTGATCTGAAGCCTGGAGCAGAACTTACCTATGCTACTCATCTCAATCCTTTTAGGCAGTGGCACTAGGAGCCTTACTCTGTTCAAA-TTTGGTGCCTTCCTACAGTTATGGAAGGAAGCTCTGTATTCTCCTTACTTTCTCAACCTT----------------TGATCCTAACAGAGGCAGTTTCt s canFam2.chr12 5039072 1408 + 75515492 CAGTAC-----TGGGGGAGCA--------------AATAATGAAAATGTTTTGCTTTCTAGGAGGAtatgat--aaccagtctccacaaggatccccaatgtctctcaacct----------------ccagtaatta-actcttgtacagtcctctcccacattttatcagaattggcctagacatcactatgatcaactga-aacagcagaagtgatggtatatcaatcccaggaacaggctatggaagacattgcag-------------------ctcccatccctt----tctttctctcatcacttgttc-----------agctgca-----------------------------------------tgatgaggaactgagttctccagtcaacagccatatgaatgaattttcttgcaagtagatccaccagccccagtcaagccttcagatgactgcagctttagccaa-accttgactgcaacattatgcagactaagccaaa-ctactcagctaaactgctccccactttctgacctaagaaataatatacatttattgctttaagccactgaattttggggtaattttttatacagtactaaatagctaattcaCTGGGACTCTATCAGAAA----------ATGTGGATTACAGTTACTCACTTACTACCATGGCCTCAGAAATGCATGCTGATTTCCAGAATTCATCCAGTTTTTCTTTAAATGTAGCAGTTTTTCACTTTATATGTCG-TGTCTTTAAGGTTGGTTACATTACATATTTGAAGATGCAGAATAGCCTGCCTTGACCCTCAAAATTAGTCCCTGTCTCCTCTAA-----GAATCTGGCTGCTGTTCTCAAAATGCTGCTCAGCATGGTATTATCCTAGCTCGAAGTTTAATTGATAATTCATAGACATTTACTCTATTATAGAGAACTAGTAATTTCCATGTGAGA-TTTTGCATCCACAAATGCCAGTTACCCTTGTTCTACCTGACTGTCCAA----AAGCATAAGTCAATAATG-----GGAATAAAGTGAGAAGGAGAAACTGAAGACACCAACTTCTTATAGAACTATTATGTATTTCTGCTCTGAACCTTCTTCT----ATC-CTGGGTCTAGATGCCTTGGGTCTAGGCACAGGGTAATTTTGAATAGCATAATCATGTACTTTACCCCAT---------GTAAACTGGCAATCAAAAGTATGGGAGAGGTTTTAAGTCTCTTGACAATACCTGAAAGAAAA-AGGGAATTTTACCCTTTTCCTTTTAAGGT-----------------------------CTCTATTTAGCCCATTGATGGGGAGAGAAAACTTGCCCAGG------GGAAATGTCCTTACCAGTGTTATTTTCCAAAAATGTTCACCCAAAGCCTAAAGCAGAACTTATCTATGCTACTTGCCTCAATC---TTAGGTAGTAACAACTGGAGCCTTAACTTCTTCGAACTTTCTCACCTGTCCAGATTTATGAAAAGAAGCTTTATTTTCTCCTCTTTTCCCCAGTCTCATGGAAAGACCAGGAATAATCCTAATACAGGAAGTCCCT a score=61853 s hg19.chr6_ssto_hap7 3702075 1466 + 4928567 AGGACGGAACACA----GTTTTACCTAACCTTCCAGTTTTCTCCCTCTTGTTTTTCTCCATTCTGCCTTCCCAGTATTTGCAGCTTTCCT-----CCttttttttttttttttttttCCAACTATACATGCAGTGGCTGTTTCTCTGGATCCAGATGCAGCTCATCCCAACCTCATCCGATCTGAGGGTAGAAGATACACTTCTTCAACGGAGAATGTTCCCC-GAACTGGGATGCCCCCACACACCAAGGACAAGGGGAATCCAAAACCATCTTCAGTGTTCTGGGTTTACCACAGGGGAGACATTACTTTACCACAGGGGAGACAGACATTACTGGGAGGTAGAAGTAAATAATGGGGACAGAAGTTGGACCAGGAACGAGATGAGCTCTGGGTGTTTGTTCAG-CACAATGAAGAGAGAGTGGTGGTTTGTAGAAAGTCCAGAGAAGAATTTCTGCATGGTGACATGTGAAGAAGGAAGGGTCATGGCTCTCACTTCCTGCCCAGAGACTCTGTCA--GGAGCCTCCCTGTCCCCC-----TAGAAGGTTTCCAGGACAGCAAGGCTGGAGACGTGTCTTTTCACAACGAGGTCGATTAGTCCCACATCTATTCTCTTACTGGAATCACCTTCTGTGGGATTTTCCATCCTTATTCTAGCCTTCAGAGTGCTGGCACATCTGTGACCTTCTGCT------TAGATCATCATGAAAATTGTCCTGATTCTTTTCCAGTTACCCCTGTAACTTCTTTAACGAGTTGTGATAGAGATGTTGCCCAGGAAGCTAATGTTCTATTAGCATAATAAGCAGCGAAGTGTTGGCACCTCTGCTGTCTCCACTGGAGCATCTTCTAG--GTACATTCACCAGGAAAGCTGTCCTTGGATGGTGAGTAGGTCAGTTTCACTAGGTGTGATTTCACTTTCTGTCAAAGAGGAAGAGGCAGAAAGTGAAGTGAGAGAACTGGAAAATGTCCAGGGAGATTTCCTCCAGTGCTGCTATTGGGGAAATACAGTCTCTTTGTGGGCAGCAACTATTTCTCACAAGAAAACTCCAAACAAGTTCATGGGTTTCTCATCTGTTTTCATGCTGAGTGTGTG----------------TTGAAGTATATAATTTTAAAGCTACATTTACAGGGAAA----TCTCTTCTTACTATTTTTGTTATCAAATATGGAGGAGGGGAGGCGTTTGAAGGGAAGTATTGCAGTAGAGTGAATTCTCACTTC-CATTACCACTGTTGGAGATGCATAGGAATCTGTCCAAGTCCT-------TTAATAGCTCAGCGTGTTTGCTCTTCAGGCTCTAGTGTACAATCAACTGCTAATCTTGGACTTTGACAAGGGACGGAGAAGGCTCATGAATAATTGTAAATAATTGGAGGAGGAGCCCAAGCCTTCTGGAAGGAAA---------------------GAGCCCTTTTCTTTAATAAGTTCTCACTGGTCAGCAAGTCCAGAATTGTGTCCTATGTGAGAATGTGAATGAAAGAGGAGTCAATG s canFam2.chr12 5086063 1485 + 75515492 AAGACAGAACATAAATTGTTTTACCTCCTCCTCTGTGGCTCTCCCTCCTATTTTCTTTCATTCTCCTTTCCCTATATTTGCATCTTTCCTAAGGCCACTGAGATATGACCTGTATTCCCCCCTACACCTGCAGCTGCTATTACTCTGGATCCAGACAGCGCTCATCCCAATCTCATCCTATCTGAGAATAGAAAACAAGTTTCTTTAATGGAAAATGTTCCTCAGAACTGTGATGCCTCAGTATGCCAAGGACAAGAGGAATGTGAAGCTGTCTTCAGTGTTCTGGGTC------------GGAATTGCTTTAATACAGGA-----AGACATTACTGGGAGGTACAAGTCAATA-TGGGGACAGTAGCTGGACCTGTAAATAAATGGGCTGTGGGTGTTTGCTCAAATACAGTAAGAAGAGAGGGGTGGTTTGTAGAAGGTCCAGAGAAGAATATCTGGGTGGTAGCATATGAGAAAGGAGAAGTCAAGTTTCCTACCTCC---CCAGAGTCTCTGTCACTGAAGCAGC---ATCCTCAAAGGATAGGAGTTTTCTTGGACTGGGAAGATGGAGATGTGTCATTTTACAACATGGCTGATGGGTCCCACATCTGTTCCTTTACTGGACTTACCTTCTATGAGACCCTCTGTCCTTATTTTAGCCTTCGGGGCACTGGCACATCTGTGACCATCTGCTCAGGTTTAGATTACACTGAAAATTGTCCTGATTCTTCTCCAAATACCTCTGTAACTCATTTAAGGAGTTGTGATACAGGTGCCCCCCAAGAAGCTAAGCCTCTATTACTTCCATAAG-----AAGTGTCAGCACACGTGCT-------CAGG-----CTTCTAGTGGTATGTTCTCCAAGAAAGCTGTCCCTGTGTGGAGAGTAGGTCAGCTTCACTAAGTATGATTTCAACCCCTTCCAGAGAGGAAGAGGCAGAAAGAGGAATGGGACAACTGCAAAATGTCTGAAGGAATGTCCTCTCCCGTTATTTTTGGGGAAAGACAGCGTCTTTTTGAGTAGCAACAATTTGTCCCAAGAAAATTCCAAACAAATGCAT-GATCTCTCTTCTGTTCTAGCACTCAATGTGTATTGAAATAAACATTTTTTGAAATAAATATTTTTAACGGTACATTTTAAGAGAAATATCTCTCTTCTTACTATTTTC--------ATATGAAGGAGGGATGGTGTTTGAAGGGAAGAATCATAGTTGAGAGAATTCTTAATACATGTTACTAATGTTGGAGATACACA--AATTTGCTCAAGTCTTGTGAAAATTAATAGTTCAGTTTGCCT-TTCTTCAGGTCCATGC---CCATCAACCTCTAAACCTAGAGTTTGCCATGGAGTGGGCAGGATGGATGTAGAACTATAAACCATTTAATCAGAATCCCAGGCCTTCTGTGAGGGAAATcacacacacacacacacacaacacaTATTTTTAAACAAAATCTCATTGGTTAGTAAGTACTGAATTGTGTTCTATATGAATATATGAATGAAAAATGAATTGATg a score=6888 s hg19.chr6_ssto_hap7 3703541 193 + 4928567 TTGCAGTTTATACTTTAGGAGAGAAAGCAGTAAAGTAGAAATAAAGAAACATCTGTA----CCA-----AGAGTCATTGCTAACATTAACA---TTCTTTTTCTTCCTGACC-TGTTCTGCCCACTGTTGAGGGTTTCCCTTGTCCTTGCTGCATGTAAGACTTCTCCAGCTGTTTATCATCAAGTTGTCTTCAAGGATATAGAAT s canFam2.chr12 5087744 193 + 75515492 TTGTGGTTTATATTTTCAGGGA-AAAACAGTCAAATATGTATGAAGAAATATTTACAGACTTCATGGAGAAAGTCATTGCTAACACTGGCATATTTTTTTTTCTTTCTGACCATCTTCTTCTCACTATTGAGAGTTT-CTTTGCCTTTAATGCAACTAAGGCTTCACTAA--GTTTA---------TGTCTTCAAGGATATAAAAT a score=24970 s hg19.chr6_ssto_hap7 3704368 556 + 4928567 GAGCTTCTTCTGTTAAATGAACCCTTTCTTCCTGATGATGGAAGAGATCCCCTTAGTTTTTCTTCTACAGTATTTGCAGATCTGTAAACCACAAGTGCCTCTAACAATCTGTCCTGT-AGATGTATCTCCTTGGTGAAATTTCACgtcacacactaagtggcaaagacagtattcgaagccaggAAGAATCAAGCCAGAGCCTAG--TCCTAATTTCACTGACCCTAAAGGGAGGC-TTACACATTTCATCAAGAAATAATCAAGGCAGGACAGAGGTAAATAAATGGTGATAAAATATTAATAGTTATAATCAAATGGACATGGTGGATGAGAAGGGATTTCTGGACATGCGAGCCCTAAACATGGGGGTAACAACAAAACAGGAACAAATGGGGTGGAACTGTGGTATAGAACACGAAATGTAACAGGTTCAGCCTTAGACATTTTACTTTT-TTATACACTTAGGACATTCAGCATGAGGTT--CAAGAGGAGTTTTTACTATCTCTTTTTCAGAGTCTAAATTCATATTTT-TTCTACAACAAGATTCTTAAACTTGTCA s canFam2.chr12 5087939 555 + 75515492 AAGCTTCTTTTGTTAAATGAGCCCCCTCTTCGTGGAGCTAGAAGGA--CCACTTAGATT---TTCTACACTTTTAACAGATCTTCAAACCACAACTCCCATTATCAATCTCTCTGGGAAAATATATCTCCTTCGCAAAATTTCAT-TGACAAACTTAGAGGTAAAACCAGTATTGGAACCTAGGAAGAATGAAACCAGAGCCCAGAATATTAACTTTACAGACAGTAAAGGGAGGAGTTATATA-ACAAGTAAGCAAAAATGAAGGCAAGACAGAGGTAAATGAATAGTGGACAAATGTTAATAGCTATAATCAAATGGATTTAGTGAATGAGAAGGGATTTCTGGACATGAGAACCCTTTACATGGAGATAACCACAAAATAGGAACAAATGGGATTGGA--ATGATATAGAACAGAAAGGATAATGGGTTCCATTTTGGATATTTTACTTTTGTTACATATTCAGAACAATCAGCATGAGGTTTCCAAATGAGCTTTTAAATATCTCACCTGAAGAAACTAAATCCATATTTTGTTCTACAATGAGATTCCTTCACCTGTCA a score=34054 s hg19.chr6_ssto_hap7 3704924 826 + 4928567 CTTCTTTACTCATTTTAATGGGTGTTTGTCCTTCTAAGCTTAGAGATTGGGGAGCAGTGGCTGCAGGTGGACA-TGGTAGAAAACGTGAAGGTGGATGGTTGATTGGACTCAGAGCTTTAGACCTGTCAGGGATAACAGTGTCCATCTTATTTTCATTTGTAGCTTTGAGTAAATCAATAAGTAGTGCAGGGTCTCCAAGTAGCCTATCCTTTCTGGAAAAGT---------GAATTCACCACCTGGCTACATCAATTAATTCTTTATTGCTGGACTACTCTGGCACTCCCATTTTTAGTAAAGTTTATGAAGGTATAATAAGACATTCCAAAAACAGAGTGA----ctccactgcaaaaaagaaagacctgagggcaggaattatgtcttattaaggattgtatctctaggccttagcatagtacattcaacaggtaagatattcaataaatatCAC-TTTATGAGACAattcatgcattttacaaatgtttattgat-aatcaatgtatgtcatttttacaggttgtggggctagacaagaaggaaaaaaatcactgtcctcatggaagttaaattgtactgacaaaggaggaaaa----tgtcagggagttaacaa-TTCAGTCTCTGTGGCTTCCTCCTGTCCTCTCCCTGAAACTGAGATCCAGCCAATCTGCACATTTATTCTGAGAGTGGCCCCACTTTA-ATGACTACACCCAGCTGTCTACACACCAGGAGGGG-AGGGAACTGTATCCT-GAGGCACCAACCTGATTACCCACCCAACAGCCACAGGGACTTC--CAGTGACTGGGGCATCATCCTCAACGCCACCAACCCCTCTCCTTCCT s canFam2.chr12 5090148 846 + 75515492 CTCCTCCATTCATTTTAATGGAT-TTTGTTCTTCTAAGCTTCGAGACTGGAGATCAAAAGCTAGAGGTGGGCAATGAAATAAAATGTTAAGGTTGATGTTATATTGGAATCATAGTTGTAGAAATACCAGGGATAACATCATCCATCATATCCTTATCTCTAAGGATGGGTAAATCAACAAGCAATGAAGGGTCTCCAAGTAGCCCACAGTTCCTGACAAAGTAGTGACCATGAACTCACCACTTGACTCCATTAATTAAATATTTACTGCTGGACTGCTCTGGCAATCCCATTCTGAGTAAGCTCTATAAGGTAATAATAAGACATTCAAAAAACAAAGAGAAAGACTTAACTAGAATAAAGAACTATATTAGAGCAGGAATTATGCCTTGCTATGCATTTGATCTCTACAGTCCAGCACAGGGTATTCTAAAGATAAAATATTAAATAAATATCCTATTTATGAATCTattcctctatttcataaatgtttattgatcaactaatatatgtcactcttctactttgtgatgatacacacacac-aaaaatatcactgccctaaaggaacttaATGTCTACTAACAATGAGGAAAAAGTTCTGCAGAGAGGTTAACAAATTTGGTCTCTG--GTTTCCTCTAGTCCTTTCCTTTAAACTGAGCTGCATCCAATCTATACATCTCTTCTGAGAGTCACCATGCTTTGCATGACTGCAACCAGCTCCCTATGCATTAGGAGTGACAGGGAGCTGGATCTTTGATGGGCCAATCCAGTCACTCATCCATCAGGCATAGTGACTGCATCAGTGATTAGAGTGTCTTGATCAA-GCCACCAACAT-TCTCCTTCCT a score=47895 s hg19.chr6_ssto_hap7 3705750 1476 + 4928567 GTGGCTTTTCTAACTGGAACTGGAACTCAGAAAGTACATTAATCACCAATTTGGGAAGCTATAGGAAAGTATGTTTTCTAATATACAGTGAGAGAATGTGACTGATAAAAACCAATTTTCTTGAGACTTTCTCCCTGGAAAGTGAATATATGTATTCATAGGGCCTTCACAAGCACA---GACTAACAAGCAAAGAGCTACATTCACTAGGAAGGAAGACTCAAAAGTAAGTGAAAAATAATAGTTAACCTTTAGATGTTGTGCaataaattatttttaattacattaaatcaaaatag--------------tgtt--------aaaatattttCAGGTAAACCTAGTATATTTACTAATAAATTTAAGTCTTCATAAATATAAAGA-----------TAGATCAATGTA---AATGTAA-AAATcatttgttaaactccagagattatataaacaaaaggtgaacct-aatgtaaaac-----tgtggactttagttgaaaataatgtgtcactattctttcatgggttgtaacaaatgtgccacactaatgtaagatgttaataatagcagaaata--ggggggagagaggagggatctaggagctctctggattttccattttattttgttataaatctaaaactgttcttaaaaa-taatgtctgttaattttttTTTAaaaaaggaaagaagcactgatacatgctatgacatggaagaactctaaaaatattaggctaagggaaagaagccacatacacatacacatacacagatagtttatggttccatttatataaaatattcagaatagaaaagttcatagggacagaaag-tagatta-------cctggg--gagtagggagtgaaaaatgggtagtaactgcttaatgggtatgaagtttcgtttagggcgatgaaaatattctggaactagaaagtgatgatgatggtcacacagcaatgtcac-atatacaataccacagaactgtacactttaaaatggttaaagggttttattttatgttatgtattttaccacaattgaaaaaaATGTTTATTAAAATTAATGTGTAAACATTTGTGGAAGAATAATGTGTAGTTTCTAACATTTATGTGTTTAAATTTATGAGTTTAAAAA-TAGAAAAAAAAATGA-TGGCCCAGAAGAGCAAGTTCAGAGTGCTGTTCATGAGTGATCCGCATGGGACCGCGATGCCTCTGACGTCTGCCATCCTGGAGAGCAGCAGAGCGTCACTAGCAGGTCCTCGTC-TTCTCACTTCATAACATT------CTTTCCAAAAG---TCTTGTTGACATTCTTCTGTCTTCCACATATAGTTTATCTTCTTGAACTCATTATAACTTTAAAATATTTTTACT--GTGTTACATGTACTGCttatatttgtttattttataattattaattttaaattGTGCACTTTATTTTGCTCTAACAATAAAATTGACATGTTCGTATAGATGATACATAATTTT-----------------------------------------------------------------------TCGCTTGGATCGGAAA-------------------------------------------------------------------------------------GTCTAAAATTT--TTTTCCTGACTC s canFam2.chr12 5091171 1624 + 75515492 AAGGTTTTTCTAATTGACATTGGAACTGAGAAATTAAATTAATCCCCTATTTGGTGAGCTAAAGAAAAACATATTTCTTAATACATAGTGAAAGGATTTTACTGATAAACAGAATTTTTTTTGAGACCTTC-CTAGGGAAAACCTATATATTTACATATTGGGCCTACACAAGCACATAAAACTAACATGCAAAAAGTTAGACTGATCATGAAGGAAGACAAAAAAG------AGGGGAGGTAGTTAACCTTCAGATTTTATCAAATAAAACATTTTTAGTT-CATTAAATCAAAATAGAATAACattaaaaatattttaagaaaaaaatattttaaGGCAAAGTCAACACATTTACTAATAAATTTGA--CTTCAAAAATATAAAGGACATATAAGGGTATATTAATGTACCAAAAGTGGTAAATcatttgtcaaacctcacagaatgtacacacaaaaagtgaaccttaatatggaccctatatagagattatagttgaaaataatgcatcagtattggttcatctgttggaataaatgtaccataccaaggcaaggcgtaaatag-----gaaattatggggagagagaggagggatatggaaatgctctggatttttcactaaatttttcaataaacccaaaacagctcctaaaaaataaaaattgttaattt-------aaaaaggaataaagtacag-tacatggtacaacatggatgaaccttaaaaatattaagttaaaagaaa--agccagacacagaaa-----atccatatattttatg-ttctatttatatgaaataactggtataagtaaattcatagagacaaaaaaatagattaatggttgccagggtcaggggagaagagaaaaatgggtagtgactgcttaatagtttggagttttcttctggagt------aatatcctggaactgga---tgttgatgatggttgcacactattgtgaagatatata-taccactgaattgtatactttaaaatgat----gggttttatgttat---atatatttcacTAC---TGAAAAAATT------TAAAACTAA-GT-CAAAGAAACGTAGGAGAATA-----TAGTTTCAAACAT----------AAACATATGAGTTTAAAAAATAGGAAAAAAATTCAGTGAACCAAAAGAGACACTACAGGATGTGATAGATGAGTGATTTTCGAAGGACAGTAATGACTATCATGGCTACC-TCCTAGAAAGCAGCAG--TGTCATTAATAGGAATTCCTAATTCTCACTTCAGAAGATTTCAAGACTTTTCCAAGTCTTTCTTTTCCATATTCTTTCTTCTTCTACA----GTTTCTCTCCTTTAATTTATTATGGCTTTAAAATATTTTTACTATGTGTTGTATTTATTGCTTATGCttatttattttataattattaattttaa-ttGTGCACTTT--TTTGCTCTAAAAATAAAATTGGCATCTTCATATACACAATACAAAATTTTCTCTTtttttccagttttattgcaaaataattgacatatatcactatataaatttaaggtgtgctgcatgatggctcaagttgcaaatattgtgaattgattaccacaacagatttagttaacatctatcatctcatatagatacaatGAAAAGAAATTAATTTTCTTCTTGGACTAGAATTTCTTTTTCCTTAATT a score=8290 s hg19.chr6_ssto_hap7 3707226 214 + 4928567 AATTTCCT------GTATCAACTTTCTCAAAAAGTCTGGAGGAGGGATTTTACAACACTTCATAAGATTTTCAAGATTATATTTTAGTGATCAGATTTTTCTCCCCCTTATGCAGCTGTATTTTCTTTCACTTTTTTTTAACTGtatatatatattttttattttCTCAGTTCCACCTATGTGGACAATTAATTGTCACCATCTTAAATAAACTGATCAg s canFam2.chr12 5093183 199 + 75515492 AATTTCCACTCCAAGTCTCCACTTTCTGAAAAAATCTGGCATAGGAATTCTACA---TTTCATATGATATTCAAGATTATATCTCAGTGATCAGATTT--CCTCCTTCTATTCAGCTTTATTTTCTTTTACTCTTTTTTACCTGTAT--------TTTTCACTTCCTCA----TACCCACTTGGAAAATT----GTCAGCTTCATAAAGAAACCTATCAA a score=175818 s hg19.chr6_ssto_hap7 3707809 4107 + 4928567 TGTAGGCTAAATTGTATTTCCCATGGGATTTTCTAAGGGTCCTTGATTATCAGATGTCAGATTGTGATTGATAGGCCGGATCTCAGAGAACCTGGAACAGGATAGGTCTCTGAAAAGATCAGTCTCCAG--CAGATTTT---CCTGAGTAGAATTAAAACACCTTGAGTTAGTACTTCAATGATCATGGCAGCCCCCTTCAAGCAGTTAGAGAAATGAGAAATGATCAGGACTCAGAATATCATTCTGGTTTCCAGAATCCCAGATTGTTATTTTCCTGATACGTTGGAGATGTT-------CTTGTGGGTACAGAAAAAATGTCCAGAGAACCTACATTAGGGAACCAAAGAATGAAGCGGGGTGCAGAGTCCCAGAGAAGGAAGTTTTGGGGAAGGTGTAGATAGGGCACTTGCCAATCATGTTATAAGAGGAGAGGTATTCAGAGGCACGGTCAGGGGGATTCTGACTTGTTCAGGGGCCACCTTCAAGGGGATGGGGCTTGGAAGAGAGGGGATGGCCCAGAACTCATTTCTTTTGCAATCCATTGCCTAAAACTCACTGTCAGGTGACACAGAGATGACTCTTTCTTTGCA-ACAT-GTGCTTGGCAACCTCCGGGACCCATCGCGCCCTGTTCCCAGTCTCCACCTCTCAGTACCAGCTCCCTGACAGGAGTTCCCTCTGGCC-----CATAGAGCAGATAGTCAGATCTCTGTGGGATATCTGGCTGCCTGAATGTCCATGGATCACACGCTTGTTTTGTTCAGAAGAAATCAGTCTCAGGTGAGCTGTGTTTGAAGCCAATGTCACATTCACTGTAAAGAAAGAGAATCCATTCTGATAATTAATCAATATA-----------------ATTTCATTCTATTAACAGCCAAACAGGAAGACAAGTGTTTCACGGACATAAGAAATTTAAAGTGGAAGCACTTTCTAGAGCACACAAAACAGCCTCCCTAACACATGAGAAGTCACCAGCAACA---CAGAAATCACCAACAAGTAGGTCACCACATTTTTAAAGATCATAGGAAATTGTTCACGCCAACA-AATCTCAGT-GAACCTCAGCTCTCAGCCTTGAAAACAAGGATGGCTGTACTACTCACTTTTTTCTTCTTCTTCCCTAACCAGATCACTGGGGAATGGGCAGCAGGAAATCAAATCATTATCTTTTAATCATTTTGCTTCTATTACAAGTGGAAACACTGACCTCATGCATCACTGAGCCTGGATTGCATGATAAGCCCTGGGCTTTCCTGTTTCTCATGTTTCCTTAGTTACTGGATATTCACTGACTGCCTCCCATAGGTGACTTGTGAAAAGGGAGGCTCGGGGAAGTACGCAGTACGGTTCCCACTGCAG--TGTGCTCCGCTGTTT-CTGTTTCCCTGACTTACCTCTTTT-CAGCTCCTCTTCCTGGGCAGGCCTACAGCCACAGCAAGAAGCAATCCCCAAACAAGCAGTGTTTTCCACAAAAACGTCATCCTGGACTCTAAAATGGAAACCCAAGAATCCCTTGAAACTGTGAAACTGGGACAATATTAAGATTGTACTTTTCATCTGAGCAGCTTCTAGGCTGGAGAGAAGGGAGAGAATTTGGCCTCCCAGGAAG-CAGTTGGCCTGCTCCTCCCTGCTCTGGAGATGCAGAGGAGAGA----------ATGCAAGTATTTCATGTTTGCTCGTCTCAGAAATGTACACATGCACAGACAAGT---------TTTCCCTTCTCTCTTCCAACTATATCAC-ACAATCACTGGAATGACTTGAGGAG-GAAAGGATAAAATTACTCAAGCCGCAACCATGAAGATGGTATTAATAAAAATCAGTTTCTAATCCAGAAGAAAATCCTCCATGAGGGGGAAAA--CACAAAGTTCTGTAATTTAATTGTTTTCACATCAGAAGAAGAGAATTTAAAGAGAGAGAGTGAAAACAGGGTCAATTACGAGAATTTAGTGTGTATCCAATGATAAAAATAATTGCAGGGCGCTAGTTGAGGGTGTCAGAGAGAAACTCAGAGGAGTAGAATCCCTGGGTGTCCTGAAAACCAGCTTTGCAGAGGATAGCAGGAGACCTCGTCAGAGAGCAGCAAATAAAAATCACAAAGGAAGAAGAGCAATACAATGAGTAAGTCTGAGTTGGTCTTCATATTTATTTTCCAAACCTGA-AGGAACATAAGGAATCACCAACCTGAGAGAGAAAAAGTTGCGATTTTCTCCTCGCCCAAAAAGGGGATGCTGATGGAACAAGTGACGTCCACAGCGGAGATGTTTGTGACCCTTAGCAATGTCTGCACGTGGAACAGCCCGTGGCTGCCTTGAGTCAGGGCCTGGGAAGATGATGGTATCGTCTTTCCTTCCATGTCCCTCCATGGCACGTGGGGCTGTGGGAACCACCCATCTGAAGAGCACATCGGCTGCATTTCTCCATCTTCTTGCCCCTCCACAGTGATCAGTGGGGAAGAACCCAGACCTGGGGCAGAGAAAGCAA---CCAAAGCCTGGGGT-CCTTTCAAGTGGATGAGTGGGCAGCAATTTCACTGGGAGGAAAGAAGGGGATGTGGAGGGCTTGGGGAAGGGAGAAAAGCTTA-AGGGGGATTGCACTCCACTTAGGGATGAGGCTGGCTGGAGCATTTTCTTATTTTGTT-TGTTTGCTTATTTTTATTCTT---------TGTATTCCTAAA-TCATTCTGGGATGATTAAGAGGTAAGGTAAATGTTCAAATCCAACATTTA---TTCTGTCCCTGAGAACAAAATAACTTCGGCCAGGGCATGGGTCACATGGACAGGATTAACATACG-GAGTAGGAGGATATTCTCAAAAATCGAAACCTTATAAATATCTACGTCCAATGGCAGAAAAT-ACGAGGCTCATGAAACTTCTCAACATGCGCTCCCATGGCTA-------AACGTGTTTATTAATTTAGAATCAAAATCCGTGGGAGAAACACGTAGCATATCCAAGACTTGGGCCTATATGTACTCAATGGCATCTGCTAACCTTGGACGTTTCAATTCTCACACACACGGACA---GTGGGAAATGATGCTGCAGGGAGTGATTTCATCTTTTCTCCCCTGTCCCTGCCAAAACTGTCAATATTTATAATTTTGGTTTACACAGTGGATCCAGTTTAGTCTTCAGATGATTA--------------------CAGTTTCTAGAATTTTATTGCATTTCTCAGAATTCTAATAACACACTGTGAAACAATGAGTCTTTTGTAAAATATGT-AGTAAGATACTCAGATTTCCTTAAAGATATGGTCAATTTTTGAAGATACTGGAAAAG-ATACAAGTTATATGCCCAAATAATTAAATTTCATCCATTTGAGTTTGT--------GGATTTTAAGTAACTATGACAGTTTCACACACTGGAGGATTTG-ATATAAATTTGATGA-TGAATAAGCATTAAGAAAATTTCAAATGTCAGAGAAATTGTCCAGGAACTAGCATATTAAAGTGGCAGGAGCAGGTATTGAATACAAAATATCTATCTAGAATTCTTACCTACCACCTTCAGATCCAAACTGGCCTCTTGGTAGACATCATCTTTTTCAAAAAGGCAGCGGTACTGCCCGTCGTCCGAAGGTCTGGCACTGAGTATCTGCAGGGTCAGTCTGCCCTCGTCAATGGCGTCACTCACCAGCACAGTCCTCCCTCTGTACTCTGCCATCTGCTCTCCAGCCACATGGTCCCCATCCATATACACATGCACAGCAGGGTAACGGTGGGATCGGTCCCACCTCACCTCCATGCTCTGTGCATTCGCCTTGGGGGACAGGTAACAGGTTAGCTGTATATCTTCTCCCACTCTGACGAGGATGGGCTGGGAAGGTCCATTCACTTTTAAAGAAGCTGTTAAATAGAGTGGACAAAACACAATGAAAGAATCAAAATGGAACCAATAATGTCATCTCTAAGAACAGCTCCATTGGAGTTTAGAAACCATGAGCATCCCAGGGTTGCTGTGAGGCTCAGGGTCATCCTTAGGTGAGGTGGGGGTTTCATGG-ACTCAGAATAGAGGTTGCTCTTCTTTAAGGAGGAATCGTTCCATGATGTGTGTCAGTCTGAGTAAAACAGTAATTGAATCCCTACCTGCTTCTACCTGTATTTTTTTCAGTTTACAGACCAATAATAAAATAATTTTGCAATTAAAACTCCCAGA s canFam2.chr12 5093386 4067 + 75515492 TCTAGGCCTAATTACATTTCCCATTGGATTTTCTAA----CC-----------ATATCAGGTTGTGATTAGT-GGCAGGCTATCAGAGAGCTTGGGATAGGGTATTTCTCTGAAGGGATCAGTCTCTAGATCAGATTTGAAGCCAGAGTAACATTAAAGCATCTTGATTTGATAGCTGGATGATGGTGTGAGCCCA-TTCAAGCAGCTGGTAAAAGAAGAA--GACTGGGACTTGGAATACAAGCTTTGTTTCCAGAATCCAAGGTTATTTTTTTCCC------TTGGAGATGTTGCAAAATCTTCTGGGTGTAGGAAAGTTGTCAGGAGAACCTACATTAAGGA-TCAAAAAATGAAG--ATGTATAGAGTTTCAGAAAAGAAAA-----------GTGTATACAGAACACTTGTTGGTCATGTTATAAAAGGAAAAGTGTCCAGAGACTAGTCAAGGAAGATTTTGACCCTTCTTAGAGCCATTTTTATGGAGAGGATGCATGGAGGAAAGGTAATGGCCCAGTACTGGTTTCTATAACAACTCATTGTCTGAA-TACATTCTCATATGACACAGGGATGACTCCCTCCCTCCTTATATAGTCCTTGGCAATGCCTGAGACCCATACAGTCTTGTCCCCAACCTCTATTTCTCAGTACCATCTCCCTGACATGAACCCTTCTTGGCCTGGCACATTGAGCAAGCTGTCAAATCTCTGTAGGATGTATGGCTACATGAATGTTCATGGGTCACATGCTTGTATCCCTCAGAAAAGATCAGTCCTGAGTGAGTGGTATTTAGATACAATGTCATATTTGCTGTAGAGAAAGAAAATCCATTCTGATAAT-AACCAATGTGGCGAGTATTTTAAATATATTCCATGATACCAACATCCAAACAAGCAAACCAAAGTTACAGTGACATAAGAAATTTGAAGTGAAGGAACTTTATAGGGCACACAAAACAACCTATC--ACACATAGAAGTTCTTCATCCACAGAGCAAGAATCCTCAATAAGCAAGTTACCATATTTTTAAAGATCTTAGTGAAATATTGATACCAACAGAATCTCAGTCGAGTCTCAACTCTCAGCCTTTAAAGAATGGATGGCTATGCTA-------TTTTTTTCTTCTCCCTTAACTAGGTAACTTGGAAATGTTAACTGAGGGATCAAATTATTGTCTTTTAATCCTTTTGCTTCTATTATCACTGTAAATTCTGATATCATTCAGCACTGATCCTC-CTTGAACG-TAAGCCATGGACT---------CTCATGTTTCATTAATTGTTGAATGTTCACTGAATTCCTCTCCTATGTGACTGCTGAAAAGAGAAGTTAGGGAAAGTGCACAGCAAGGCTGCTCCTACAAAAGGTACTCCATACTTGACTATTTACCTAACTTACCTTTTTCACAGCTTTTTCTCTTGACCAGGCCCACAAGTGCAGCAAGAAGTAATACCAAAATAAGCACTATCTTCCATGAAAAATTCATCATGGGCTCTAAAATGGAAAACCCAGAATCCCATTAAGTCATGAAACTGGAAAAATTCCAAGATCGTTCTTTTTATCTAAGCAGCTCCTCAGTTAGAGAGGAGGGTGAGAAGTGGATCTCTCAAGAAGGAAGCTGATCTGTCCCTCCCTACTCTGCAAAAGCTGAGGAAAGACACAAGGTTTATGCTAGCTTTACCC-TTTGCTCCTGTAAGAAATACACACACATACAAATACACACACATTTCTTTCCCTTCTCTTTTCCAATTATATCACCACCATCACTGGAATGACAAGAATAGCAAAAGGATAAAATTATTTAATCCACAAGCATGAAGATGGTATTAAGAAAAACAAGTTTCTAATCCTGAAGACAATTCACAATAAAGAAAAAAAAACCCAAAGTGAT--------ATTGGCTTCATATCAGAAGAAGAGAGTTTA--TCCTTACAGTGATGATAGAGTCAATTCTTAGAAGTTAGTGTATGTGCAACAATAAAACCTG----AGGGCTTTAGTCAAG----TCAAAGG-------AGGTCAGTAGGATCTCCAGGTGTCCTGATGATCAGTTTTGTAAGAGATAGCAGATGATTTTATCAGAGAGAAGAAAATAAAAATT-TAAAAATAGTAGAGCAATAAAAT----AAGTTTGGGTTTGTCTTCATATATATTTCCCAAAGTTGAGAGAAACACATGGAATCACCAACCTGAGAGAGAAAAATTTGCCATTTTCTCCTCGTCAAGATGGGGGTTGCTAATGGTACAAGTTACATTCACAATAGAGCTATTCGTGACCAATAGAGATGTCTCCACATGGAATAGCCCATGGCTGCCTTCAGTCATAACCTCTGAAAATGCTGGTATTATCTTTCCTTCCATGTCCTTCCACTTTACATGGGGCTCTGGGAACCACCCTTCTGAACTGCATATCAGCTCTATTTCTCCATCCTTTTGTTCTTTTATGGTGATCTGCGGAGAAGAACCCAGACCTGCGGAGTGGAGATCAAGGAACAAAACCTAGAGTGTCTAATAAGTGGTTATATAGTCAGTAACTTCACTGAGAAGAAAGAGGGGGAT-TCAAAGGCTTGGTTGAGAGAACAAAGCTTATAGGGGAATTAAACTCCACTTAGGGATGAGACTAGCTGGAGTTGTTTCTAGGTTTGTTATGCTCAtttatttttatttttatttttTTGTGTGTTCCTAAAGTCATCCTCAGAG---TCAGAGGAACAATAAAT-TTTAAATCCAGTCTTTTCTTTTCTGTATCTGAAAACAAAATAGTTTTGACCAAGACATGAATCACATGGATAGGATGAAAGAAAGTGAGTAAAAGAATATTCTCAAATATCCAGATTTTATAAATATGTGCATCCAGTGGCAAAAAATGATAGAGTCCATTTAACTTCTCAACATGTGCCCCTCTGGATATTTCATGAATATGTTTAT-GATTGAGACCCAAAATCAGTGGGAGAAACAAATCAATTATGCAAGATGTTGGCCT---------------TATTTGCTAACCTTGAAAAGT-CAACTCTTATTCACAAATATAAACGGGGGGGATTATGATGCAGGGAGCAATTTAGTCTTTCTTCTTCCATCC-TGCCACTTCTGTTGATACTTATTATTTTTGCTTGTAT-GTGAATGCAGTCTAGTCTTCACATAACTATTCTACCTAGTAACTATATACATTGTCCAGAATTTTTTTTCATTGTCCAGAATTTTAAGAACACCCTGTGAAATAATGAGTTCTGTGTAAAGTTCGGGAGTAAAATTCTCAAATTTCACTAATTGTATGGTCATTTTACAGAGATCTGGGGGGAGTGTACAAGTTCTACACCCAGAGAATTAAATCTGGCCCATTTAAGCCCATTAAGTACTGAACTTTAAGTATGTACTACAGTTCC-------------TATGCATATAAATTTGACAAGCGAATGGATATTCCAAAAATTTCAAGTGCCAGGGGAAATTTCCAAGAACTAGCATGTTAAAGCAGTAGGAAGAGAGGTTGAATCCAAAATATCTG----GAATCCTTACCTACTACCTTTAGATCGAAACTGGCCTCCTGATAGACACCATCTTTTTCAAAAAGGCACCGGTACTGCCCATCATCTGACACTGTAGCATTGTGTATCTGCAGAGTCAGTCTCCCTTCCTCAGCGGCATCATTCACCAACACTGTCCTTCCTCTATATTCTGACATCTGCTCTTCAGTCACATGTTCCCCATCCGCATACACATAAACAGCAGGATAACGGTGTGATTGGATCCACCTCACCTCCATGCTTTGTGCATTAGTCTCAGGGGACAGATAACAGGTTAATTGTATGTCTTCTCCCACTCTGACAAGGATGGGCTGGGAAGGTCCAATCACTTTTAAGGAAGCTATGAGATACAATAGACAAAACACAAT-AAAGACACAACATGGAGTAAATAGTGTCATCAGTAAGAACATCTCCAGTGGGATTTAGAC-TCATGGGCATCCCGGGGA-GCTGTGAGGCACCAGGTCATCTTGCAGAGAGAGGGAGGTTTCAGGGGAATCAGGATAGACCTTGTCC--CTGAAAAAAGGAACTATT-------------------------------AATAGAACCCACACCTGCCTCTACCT--ATTTTATTCAGATTACAACCCAATAA---AATAattttgcagttaatactcctaga a score=664 s hg19.chr6_ssto_hap7 3712382 20 + 4928567 aTAAATTGCTCATTTTATTC s canFam2.chr12 5097453 20 + 75515492 ataaaattaacattttatca a score=44695 s hg19.chr6_ssto_hap7 3712771 1072 + 4928567 CTTCAATTCTGTATGATT---TTAAACTACTTCTTAATCTGTCTTAAACTACTTCTTAATGCCTCAGTTTCTTAAACTGTAAATTTGCTATACAACTACCAAAATCATAATGTT--TCAGAGTTGAACAAAATAGTTTGCATTAAGTGCCTGGAAGACCCTGCAGCGTGAGCAGAGGTGCACAGACCTGTGAGACTTGAAGGCGTTGGAGCCATCCCCACCCTCTGACGTGGTAATAGGGAGGGGTTTAAAAACGTGTCTCATGTGGACTTTTGGTAATGATATTTGAAGAAGCTTTCCTCTAGGTGGACTTTATAGTACCTTGTAAGTCTGGTCCAGCCGCTATATTTTATTTCCCCAATGCTCCACATAGGTGGAGTTATAGACACACACCAG-TTGAATGTCCTCAAATAATTTTGAAAATTAAAATTAACATTTTAAGATCAATAATTGGGGAAGTCGGCAAAGTACAAATTGTGAAACAATGATGAATGTAAAAAAGGGGTCTAATTCTCCCACTGTGCAAAGTGGGGAAAGATGTTCTCTGAGGGCTTTCCTGGGCCC-AAGCTATATTACATTTTCCATTCTCATCAGGCCCTGCCCGTGCCATTTTTTCTCTATTCTAAATTAAGTGTCGTCCTTTTCTGTTAAATGATAAGAATGGTTTTGCATAAGGTGTGATCATTTATAATAGAAACACAAGCATAAAATTGTTGGTTCTCTGCATAG-AGTCACTGGCCAAAGGCGTTAACATCCCATTATGTCATTGGCCGAAAACTGCCAGCTACCTTTGTAGAGAGGAAAGTCCCTGTCAACACAATTTGAATTTTCAGATTATTACCTTCCATTCCAGGTAACAGTTGACTCCCAGTTATTTCCAGCATTTTGTTTGCTTTGTCCTGTAATTTTACCTAAAACAATATTATTTTCCTCTCCTATGTATCTATTAAAGTCTGAAGACAA------GAATCAGAAAAAATG-GACTAGGGATTAGTTTGGGGCTGTTTCTGCATCCACATGGCTTACGGTAAATTACTTAATAAAACAGACTGTTTCCTCATCTCCTTTATCCATATGAGGA s canFam2.chr12 5097473 1025 + 75515492 cttcatatctgtacgaccaccttaaactacttctcaatctgtgt--------------atacctcaatttcttaaactgtgaaataaatatattaccatcaaaatcataagattgttctgagttaaacaaaataatctatataaaacttttgggtgactatacagtGTGAGTGAAGGCATGCAGACC-ATGAGACGTGAAGGCACAGAATCCAATCCCAT----TGCCTTGATAAAGAGAAGGGAT--GATGATGAGTTTCAGGTGGATTTTTAGTAATGAAATATGAAGAAACCTTCCCCTGGTTTGATTTTT--ATACCTTATAAGTCAGACCCAACTACCATATTTTAGTTCCCTGAAGTCCCACGTATGTGGAGCTCTCAACATACACCAGGTTCAATGTGCTTAGATTATTTTGAGAA---------ACATTGTAAGAGCAAGAACTGGGGATGTTGCCAAAATACAAAACACAAAACAATAATGAATACATAAAAAG--TCTAATACTCCCATTGTGAAAATTGG----AGATTTTCCCTGATGTCTTTCCTGGACCCCAAACTATGTTACGCTTCCAGTTC--ATCAGTCTCTGGCCATGCTAGTTTTTCTCTGTTCTAAATTGAGAGTCATCCTTATCTATCAAATGATAAAAATGCTTTCACATAGGTTATGATAATTTCTAATAGGTATATGGGCATAAATTTGTATATTGT-TACATGGGAGTCAATGACCAAAGAG-----------AAAATGTAATTAGATAAAATCTGCTAGGTACTTCTTTAGAAAGAAAACTT-------ACACAATATTAATTTTCAGATTATTCCCTTCTATTCTAGCTAAAATTTGACTCCCAACTATTTCCAGCATTTTGTTTGCTTTATCTTTCAATTTTACATAAAACAATATC---TCCATTGCAAATGTATCCATTAAAATCTGAAGATGAAAGTAGGATTCAGAAAAAATTCAACTAGGGATTAGTCTGCTGCTATTTCTCCTTCCATATATTTTACAGTAAATTACTTAGTAAAATAGACAATTTCCTAATCTCCATCACCCATATAAGTA a score=7249 s hg19.chr6_ssto_hap7 3713987 152 + 4928567 GATGCATTACAGATACAGACAAAACTCCTTTTGTC-CAGAATCCAAGTA-AAACTAAAGTTTAAAGTGC--TAAAAAAATCATGCAGCCCTGTTTGTTAATAATTGATGTTCTACTAGAATACAAGCTCCTTGGGAGCCACTATGCCTAACCCACt s canFam2.chr12 5098498 154 + 75515492 GATGCATTATAGATATA--TGAAACTTCTGTTATTTCAGAATTCAAGTAGAAAATAAAGTTTAAGGTACAGGAAAAAAATCATGCAACTCAATCTGCTAAAAATTGATATTCTACTAGAATACAAGCTCCTTGAGATAAGCTCTGAATAATCTTCT a score=13788 s hg19.chr6_ssto_hap7 3714415 305 + 4928567 ATACGGTTTTGTACACAGCCTTCCAGACAATTTTGTGCTGAAATATATTGCTTTGTTTTGTTTTGGT--TATTGTTTGTATGTT-----------CTGAATGCCTTCTGAATATCCACTGAAAAATTAATTCCCTTCTGGAGCGTGAAGTACACTGAATTATACACTGATTCCTTGAAACCTGATAATCTCATCATCATACCACATAATCCTCTTTCAATCAGCATATTCAATTAATGCACTATCTCATTTCTCAAATATGCTA------------------------AGTTATATCTAATC---------------TCttagaactggacactacattagagattaaattcaacct s canFam2.chr12 5098654 354 + 75515492 AGATACTTTTATCCATAGCCTTCCACACAGTTT-GTGCTCACATTTATTGTTTTGTTTTATTTGGGGGGTATTATATGTATGTTACTGAAGTGCCCTGAATGTTACTGAAATATTCACTGAAAA-TTAAATCCTTTCTGGAGTGTGCAGTTTGCTGAATAATATACCAATTCTTTGAAACCTGATAATCTCATCATCATGTCATATAATCCACTTTCAAACAGCATATTCAATTAAGATGGC-TCTCATTTCCTCAATATGCtatatttttatattatataatatattaattatatcatatcatatcatatcCAGAGTTTTAGAGCCTGACACTACATCAGAGATTAAATTAAACAt a score=5436 s hg19.chr6_ssto_hap7 3714900 131 + 4928567 ataaagcaattaaactttataattattgtaagaaaaaatgaaataattcccataacatattcagcatcgtgcctggcatacaattaatatttttaaa--aactattatttttataaatGAAAAACATTATTTG s canFam2.chr12 5099624 124 + 75515492 ACaaaaaaattaaaaa--ataattattGTTAGAAAAA--GAAATAATCTCTGAAAAGCATTTAGCATCACACCAGGCatataattaatatttttaaattagtcattatttttataat-----aagattatttG a score=30134 s hg19.chr6_ssto_hap7 3715052 787 + 4928567 CAGTCTTAGGACTTCCATAGAGAGCTGGGTGTCCCATCA-----------------------TTAGAGCTC------------------------ACCTG--------------------------------CAAAGCTTCCGTGCCCAGAGCCCT-CCTCTCCCACCTGACAGGAAGCAAAGGGAAGCTCCGTCTTTCCGTGTTGGTTAATTGTGGCCCCGGA-GGTTACCATGACTTAGGAACAACTGGACATGGGGTCGTATTTTGTGTGCTGGGTCTCCAGTGGGTCT------------CAGAGAACTCAGAGGAGTGACTCTTCCCCTAAAACCTTCTTGAGAGACAGA--CTTGTGTCAACCTGCCCCAAACACTGGCTTTACTTCCTGATCT---------------------------------------------CAGA-------------------------------AGGGTAAGATACACAGGTGTGTGTCTCTCCTCAGATTGTGGAGTTACTTTGCGCCTTCCAGGGACCCTTCCCTTTATGATTATGGCCTAATGGGGTTGAAGGTGCCATAGTAGA-CTCTGGTAGAGATTGGGTTGTGTTTGTTACCCTGATTTTCCTCAAAAACTCTTTCGTGGGCTGAAAGGTGTGCTTAAGCTCACCTAAAGCACACACATGGATA----------CACATTCCTGGAGCAGGTGACTTGATGGAGAGCAAGGAATTGATGGAAAGAGCACATAAGGGATCCACGTTC-TATGCACCTAGGCAGGGAGGCAGGCTGGTTGCCTTGGGCTGGGAGAAGAGGCCATAAAAAGGAGGGAGCTAGTAAGGAGGTAAAGGGGAAACTCAAAGGGGCTCAGACATCGGCTGGTTATGTTTTAAACCACTTATCTC------AGGTGCAGCAAAATAATACCCTCAGTCCAACTCCGAGATTTA-----------AAAAACA s canFam2.chr12 5099920 974 + 75515492 CCATAGTGGGACTTCTACAGCAAGCTTAGTCTGCCAGCAGCCACCTGCAGTGGGACCTTGTGTTTGAGTTCTAATTCATGGATTAACACAGTGGTATCTGTGAAGCTCCTGGTGTCCTCAATCAACAGCACTCAAAGCTCCTGAGGGCGCAGCCCTGTATCCCCCACCCAACAGGGAGCCAGGGGGAGCTCCATATTTTCATCATGTTTTACTGTGGTCCCAGAAGGTCAGCACAACT-AGGAACAACACAACATCAGATTGTACTTAGCATGCTGGGTCTCCAATGGACCTGTCAAATTGGTTCAAATAACTCAGAG---TGACTCTTCACCTAAAGTCTTCCTGAGGGACAGAGCCATGTGTCCACCTGCCCCAAACACTGGCTCGACATTCTGGTCTGTAACTAACAAGTTCTTCTGGTCAAGGTTTCTGTCTTATTATAAGCAGATGCTGCCCAGGCAACAGGGGATCTGACTTGGAAGGTACAGCTTACCAGGGTGCAGCTGTCCATGGATTGTGGAATTACCTTTGACCCTCCTGAGGCCCTTCTCTTTATCTTTATGGCCTAATGAGGTCGAAAGTGTCACACTAGAACTCTGGCAGAGATTGGGGTGTGTTTGCCATCCTGATTTTCCTCAAAACTTCCTACTTGGGCTGAAGAGTATGCTCAAGCTCACCTAATGTGCACATAGGTATATGCGCACACACACATTTCTGTAACCAGTGAGTGGAGGGAGAGCAGGAGATTAGTGGAAA------ACAAGTGATACAAGGTCATATGTATCTGGGCAGGAAA-CAGGCTGGTTATCATGGGCTGGGAGAAGAGGTCACAGAAAGGAGGAAG-TGGTAAGGAGGCAAAGGAGAAACTGAAAGAGGCTCAGATATCAGTTGGTTACTTTTTAAACCACTTATCTTTACCTTAGGTACAGTAAAGTAATACT-GCAGTCCAACTGTTAAGTGAAGAAAGAAAAAGAAAAACA a score=23883 s hg19.chr6_ssto_hap7 3716479 671 + 4928567 ACAGTATCCCAGGTTGCA-CTCAGAAAGTAACAGCTCCCTCCCAATAGTGATTAGCTTAGGGGTGTACTGGGGTGAGGAGCAGGTGCAGGACCCCATAGCAGAGTT-GAGCAGGGAGGTGCTGGGTGC--AACCCAGGTTGTCATAATGATGCTGCCCTTGTTCACACTTGAAATGTTTTCAAAGGGCCTCCAGGCCCCGGCCAGCTGTCTGCTGTCATCCCCCACACATTCTGAGGCAGCTCCCTTTCCCCTCAACACATAGAACAGAGATGATGCC-ATGCTTCCTATAGGTGTCCATCTGATGCTCACTGGAATCTCCATGAGCCCCCAAAGTGTCAGGTAACACAGCTGCAACCTCCTTGAATGAG---------GCCATTACTTTGCTGGTCTCCTCTGGTATTTAATGAACATAGGACCTGGTAAAATCGTGCCTCAGTTTTTCCTCTGGGTCACATGGTCTCATGGTAGCTCCC-----CTCCCTCTG----------------CTGGGGAGGGCAGAGGCTCCCTCCACAGGTGTGTGCCAGCACCTCG------TACTTACCCAGCTCAGTCTGGAGTTTCTCTGGAAAAAGAA--CAAGAATAACATATTAAGGAATTTGGTGTAAGGGAAAGGAGAGAAACTATTTTTTAAAAAAGAAAGCAATTTATACATTATATAGGGAAGCTCAATTCATTAAAAAAAT s canFam2.chr12 5100916 673 + 75515492 GCAGTGTTCCAGGCTACATCTGGGAAAGTTATGGCTCCCTCCCAGTAGTGATGAGGTT-TGGATCCACTGGGGTG---------TGCAGAAACC-ACAGCAGGGCCAGAGGGTTGAGGTGACAGGTGGGGAACTCTAGTTACCATGATGACACTGCC----TTCACACTAGAAAGATTTTAAAAGGGTTCCCAGAGTCCCACAGTCTGTTCTATACCATCCCTTACACACAC--AGGTAGCACCCTTTCCTCCAGCCAAATAAAGCAATGATTATGTCTGTGCCCTTTATAGGTGTCCATCTGAGGCTTACTGGGGTCCCCGTGAACACTTA----GTCATGAAGTGCA-----AAGGTACCTGAgggagcctgtggaggcctgtgttttgtcaatcccctctgatactaactgaactt--gacttggtaaagtcatgcctcagtttctcttctgGATCACGAGTTGTCATGGTAGCTCCCACTGGCTTTGTCTGAGGTTATTGCTTCCCTTTGGGGCAAGCAGGGTCTCC---------TCTATACTAGCACATCCAATATCTACTTACCTAGCTCATTCTGGAATTTCTCTGGAAAAAAAAAACAAGAATAATATATTAAGGAATTTGATCTAAGGGAAAGGAGAGAAAATATTT----AAAAAGAAAAAAAGTTCTAAATTTTATTGATAAGCTCAGTTCATAAAAAAAAt a score=168975 s hg19.chr6_ssto_hap7 3717150 3902 + 4928567 GAAATGCAGAAAAATACTGATTCTTTCCCACAGATTACCCAATGATACAGCTTTTTTTCCTTTTCTCTGCACAACAAAAATGCTGTCACTTCTATCTCCCCATGATTCTGTTGGTTTCTTCTGATATTTACAGCATAAATACTTAGCTATCAGCATGAAAATAACATATGTTCCTTTTATAGATACACAGAAAGTACAAAATTATATGGACATAAACAGT-ATCACCTAAATTACAAAGTAGAGAGACGAATTA-------------TATGTAATATACAATCAGCTTCATTTAAAATTAAAATGTAACATTAACTTTAAAGTTTTTTTAATCTATCCATTTATAT------GAATAACTGTATACTTATATCCAAATGTGGAGGGTATCCTGAAAGTTTTAGTGCAGTTATAAGTTATTTAAGGCCAGTAACTTTTATGTGATTGGAAATGTCAAT---------------------------TTATAGGTAGATGTCATGTTTATCATTGAATAGTGCATCATGAGGATTTTTTTCAACCattaaaattatttaaaaatatc--tttttattaatGCTATAATGTATAGTAAGACAAGATTCC--ACACTGTACTGTTGTATTGGG--GGGTTggttgtt--tttgctgctatttataaataaggccataattaatattctattatgcaaatagttgtctacatctctgattatcttcatatgatagatttctagaagtAATCAGCACAAGACAGCATAGGAAAACATTTCAGTTGAAGAAATATAGCTTTATTTTCTTTACAATGCAATGAATACTTGTGAGTAAAAACAATCAATGCAGAA-GAAGGAAAGGTAGAACTCAAAAATAACGCAGGCG---CCATAACAGCTATTCAAGTAAAATGTAGTGCGTATATTTCCAGTCATAAATGTTTTATGGCTTTCAATACATATTGCTATATGATAGACAATGTCTCTTGATAAAAA--TACGAGGTGCTATGGTGCAGTCCCTGGGACCTCTCCTGCTGATCTGAGCGTGTGGGTCCTAGAGGCAGAGCACTGACCTGGGAGGCTGATGACCGACCCCTTCTCCTCAGTGAGGACGGGGTTGTGGACCAAGCAGGACACAGACTCTGCAGAGGCGTTCCTGACCACCAGGGTGGCTTCCGCATAGAACAGGCCATCTTCATCTTGGATGCGATGCTCAGACACGGCCAGCAGCTTCTCTCCCCGGATGTCTTCCCAATACACCTGGGGCTCTGGGAACCAGCCCCTTGCAGTGCACACAAGCTGGACTCCACTCTCCCCAGGTCCCTCCATGTGGATGCTAGGGGCAGACCCCAGACCTGCAGAGGGAAGCCACAGCTCTGACACCCAGAGCCCACAGAGGCAGAAATCACAGAGGCTGAGATCCCAGTGACGTTGCTCACAGGGAGGTGGCCGGAGTTCAGGAGTCTGAGGAGCAGAAAGTCGACCTCAG----TCTCCCCATTCAAATGTGAGTTCAGATACACTTTATTTGTTCCCCAGTCTGCGTCTTTACATTTTAGCATCTGACCAGTACTTTTCTCCAGATCCAGA---AAGGGGAATCGGAGAAGGGGGACATCATGACATTTTGC-AACGCTTCTAGCACTGCAAACAGAGATGAGCTGT-AATTTATTCATT-AATTCCTCTGTGCCATGAACTCTGCCTTTTTCATCTTAAAATTATCTGTATTGGGCACATTGTCTGGTATTTTAGATGATGTCTTGAACTCCAATTTGATTGAAGATTTAACACAAAGTCAGAAATCACTCCCCAGGGGCCTGTTCTTCCTGCATCTTTTGCTGGTGGCTGTGATCTTCGGAAGCAAGTGGATAAACGGGAGCATGTGAAATGCGAATCTCCACGAGGCGTTATTTGTAGCTAAATATTC----TATTCAATGGGTAAGATGGTTTTGAGAAATCCTAGTTTACAACAGTTTATGAAATCATGGATTTTTTTTCTCTATTTAACGTGAAACTCCCACACCCAAACTAAGGGGACTATATTTTCCATAAATGGGAATTCTGTCTTAATCACTTGCTGGTAAAAGAGAGATCCACTCCCTTCCCTTGGACCCTTAGAAAATGTGTGACTTATTTGTAAATGTTCCTGATATTGAAATACATCAGTACGTTCCCTGTCCCCCCATGTCAGAAATATATGTATTCCTCCATCCATTTTGAATCACCTTGAAC---ACAGTAACAGTAATGGATGTTAAGAAAAAAAAAGGTATTAGGAAACAGCCTTCCAGGGAAGTAAAGAAGGAAGCAGTATCAGCTGGAGACGTTAACATCTCCAGAGAACTATTTTCCCCATTTGCCTTAGTAATTGGATTTACTTGATTTTCTCTTTAGAGCATGGAGAAGTTAGCCCTGTCAGGGAAT---------CATATGATAGTTTACTTTTCA-----------------TAAGACAGATCCATTCTTCAGTTGTCCCCTTCTTCCCTACTCCTTCCTGCTTAGCTAATACAACAGCAATATGAAGAACCTTCCCATTCACAGAGGGTGTGTCCAAAAGCATCTGTGAGTCCCCAATTCATTGAACACTAGTATATAACAATCTCCAAAGCACGACATTCTTAGCCTTTTCAGTCTTGTTGAtagctttctaactgagggcatttcacaaggaaagaacattttcacgtctcagtttctgcatagatgggattgggtagagaaaaaccaatgcc-ctgagatacagatgccggac-gtcagctgggctcattcatgcagcaattggtttgctcttgcgcaccagccttaggtagcacaaatgtgtgtctcagcaaaattgctaaagactgcatgtcatggattccaaataatcctcaagaacagtcaaa---------actgtgcaaattaaatttgggaaAATATTTTAACACTAAGC-----TTGAAGACTCCAGAACCACTTATTTTTAAATCAATCAGGGTAGAGGACTAAGCATTAGGAATTACCTTGATGATTCAAAAGGATTTCCTCAAC----------------TGTCACAAAGCTTACCACAAATTAATATATCTCTGCCTCTTGAGACCCTGTGTCTTTCCCCAGATATTCACCTGCTACTTTGAGCAGCAAGCTTGTTTCTCCACAGTAGTTCCCATCCTGGAAATGGCACCAGTATTGTCCATTGTCGGAGGGCTGGATGTTGTGTATCTTCAGTGCCACATTTCCCTTTGCAATGCCATTCTCTATCCACTCTACCCAGCCTCTGTACTCCTCCATCTGCATCTCAGTCACCTCCACTCCATCCCTGTGCACAAACACAGGTGTGCTGGGCTCTGAGCGGTACCACCTCACCTCCACGTGCATTGTGGTCCTCTTGGGGAGTAGCTGGCAGGTTAACAGGGCATCTTCCCCAACCCCGGCCAGGATAGGATGAGCAGGGCCAATGACTCTAAAGTCTTCTATAAAATA-AGTGAAAAAGAGGAACGAGGAAATGCCAATCAGAAAATC-ATATGCATGCTTTGGGGTGTCCAGCCTGTCAAAATGGAGGCAACTAGAAGAGGGAGAGATATATGTTTAATGTTTTAGAGAAATCCAGCATGATGATTTGCACATCTGTTTGTTACAgagtcaattttgtgtactgaaaacaa-atgcagttcaaaaatgtgggtgaggttgct--gtctgtcacctaccagctatgtgattcggtgg--caaatctattactcttggtaagattttgagatttgaagtcctaatttcttcatcttcaagatattaataccagcatacctgggttgttTTTATTCTCAAGTAAATTATTTATTCCTTGAGTCATTTATTCTCATGTAAATTGA-CTTTTTAAATTGGAAACCTTATTCTTGTTATTAACATTTTATTTTCCTGAAGTTTAGA--TAATAAATCCATTTATTAGCTTTTTTAGCC--TTTCAGGATTCCTCTTCTCTTAGATATAAAAACTGttttttttgtttttttgttttt s canFam2.chr12 5101770 3837 + 75515492 TAAACACAGAAAAATA----TTCCTTCCCATGGATCACCTAGTGATCCAGCTGTTTTTCCTTTTATTT--CCAATAAAAGC-CTCTCAGTTCTATTACCCCACCATA--GTTTATTTCTGCTGATATTGAACATATTGATATTTAA-TATC-TTGTCAAACTGATACATATTC---TTATAAGTGCATAAAAGCTATAAAAATATATGGACATAGGTAATTATCACCTATAATTCCAAATTGAAAGATAAAACACATATAAAGCATTTATATAATATATATTCAGCTGCTTTTAACATTCACATGTGATGTTTTCTTTAAA--TTATTTAATATATCCATTTATATAAGTAAGAATAACTAAATCTCTATATCTAAATATAGAAGATATACCAAAAGTCTTAGTGCAGTTTTAAGTTATTTAAAGCCATTATTCCTTATGTGATTGGAAATGTTTatagatagatacataggtgggtagataggtaatagatagatGTAATCTTTATA--TAAATAGTCCGtcatgaggatttttt-caaccattaaaatcatttgaaaatagcatgtttcatcaatgctataatttatagtcacataagatacttaacactccactattgtattgtgcctttttaactgttgttttattgctatttataaatgaggctataagtaagatactattatttaa-tagctgtctccatctctgattatcttcacatgacaggttcttaaaagtaattgGCACAATGTGGTACAGGAAAGCATTTTGATTGAAAGAATATAGTTTTATTCTCTTTATCATGTAATGTATA--TGTGAGTAAAGAAAATTAATTCAGAAAGAAGAAAAGGTGGAATTTGAAAATAAC-TAAACAAATTAATAATCACTATTTAATAAAAATATAGTA--TATATTTCCAGTCATAAATAGTTTATACTTTTTAATACATATTACTAAATTTTAGATATTTTC-CTTGATAAAAACATATTAGGTGCTATGGAACTGTCCTTTGAGACTTTCCTGCTAATCTGAATACACTGGTCCTAGAGACAGAGCTCTGACCTGGAATGGAGATGACTGAGCTCTTCTTCTCATTGAGGATGGGGTTGTGGATGAGACAGGACACATTCTCCACAGAGTCATTCCTGACCACAAGAGTGGCTTCCACATAGAACAGGCCATTTTCATATTGGATTAAATGCTCAGAAGCAGCCAGCAACTTCTCTCCTGTGATATCTTCCCAATAAACCTGAGGTTCTGGGAACCAGCCTTTTGCAGTGCACACAAGTTGGATTCTACTTTCAACAGGTGCCTCCATGTGGATGTAAGGGGCAGACCCCAGACCTGTATAGGAAAGACACAGCCCTGAGGCCTGGAGACCATGGAAGCACAAATCACGGAAACCAAGATCCCAGTAAAATCGCTCATAGGGAGAGGGTAGGAGTTCATGGGTCCAGGGAAC---AAGTCATCCAAAAGTCTTCTTCCCATTCAAATTGGATTTCATATACACTTTGCTTGTTCCCCATTCTGGATCTTTAAACTTTAGCATATGAGCAGTATTTTTCTTCAGATCCAGACAGGAGGAGAATAAGAGAA-AGGGACATAATGACATTTTGCTTATGTCACTAGAACTGCCAACAAAGATGTGTTATAAATTTATTCATTGAACTTTCCCATGCTACAAACTC--------------------------------------TGTGTGGCATTTTAGATGATATCTTG-ACTCTGATTAATTAGAATGTTTACTATAAAGCTAGAAATCATCTCAATGGGGATTACTCTTCACTT-TTTTCTGTTGGTGGTTGTGATCTTAGGGAGCAAGCAGATAACCTGG-GCATGT-AGATGC------CCTTGAGGAGCC-TTGGTTTCTAAGTATTCCTTACAATCAATGGG-AAAATGTTCTTGAGAAATCCTAGT---------TTTATGTAATCATGAAATTCTTTCCT-TATTCAAAAT--CGCTCTCAAACCCAAAC-AAAGGGACTATATTTCCCATAGATGATAACTCT------ATCACTTGCTGAGGGAA-AGAGACTCACTCCCTTCATCTACAGCCTTAGAAAATGTGTGGTTTATTTTCAAAGGTTCCTGATAGTGAA------CAGCTGCTTTCCTCTCTCCACACCTCAGAAATACATAGATTCTTCCATCCATCTTCAATCACCTAGAACATAACAATAATAATCATGGGTGTTAAG--AAAAAATGGTGTTAGGAAGCAGCCTT----------------------AGTCTGAGTCAGAGATGGTAATATCTCTAGAGAACTATTTCCC-----TGAGAAGATAAATAGATTTGCCTGTTTTTCTCTTTAGCATGTGGGGGAATTATTCTTGCCAGGGAATTATTCTTGCCATATAATTATTTACTTTTCAGATACGTGTTTTTCCCCTAGGACAAATAGTTTTGTAAGTCATCCCCTTTTTCTTAACTGTTTCCCACTTTGCTAATACAAAAACATCAGACGAAAGCCCGTCATTCACAGTGGGGATGTCCAATTGCATCT---------CAAT----------------------------AAAAACATAAAGTTCTTAACCTCTTTGTTCCCAGCATTAGCTTTCTAACCGGGAGCATTCCACAAAGAAAGACAATTTTCCCAT-TTAGTTACTGCATATTGGAGGGTGGGTAGATAACAATGCATTCCATTGAGATATGGTTGCTGGGCAGTTAGCTAGACTCACTCACTCTATGATTGACCTGCCCTAACACACCAGCCTGATACAGCACAAATTTGTGCCTCAGTAAAATTGCTAATGACCAGATGTCATGGATTGCAATTAGTGGTCAAGAATAGTCAGAATAGTCAATACTGTGTAAGTTAAATTCGAGAAGATTGTTTATAAGTGAGCTTGCTTTGAAGACTTCAGAATCACTTGCCTTCAAAGGAATCAGGACAGAGGACTGGTCATTAGGAATTACCTGGAGGATTGAAAGGGAATTTTTCAACTTATTTTTCAGTTCATTGCCAT-AAGCTTACCATAAATTAATATACTTCTCCCTC-CAAGACTCTATGTCTTTTCCAAGATATTCACCTGTAACTTTAAGCTGCAAGCTTGTTTCTTGACAATAGTTATTCTCTTGGATACAGCACCAGTATTCCCCATTATCGGATGGCTGGATATTGTTTATCTTCAGAGTCACTTTTCCCTCAAGAATGCCATCCTTTATCACCTCTACCCGGCCTCTGTACTCCTCCATCTGCATCTCGGTCACATCAGCTCCATCCCAGTGTGCAAACACAGGTGTGCTGGGCTCTGAGCGGTACCAGGTCACCTTCATGTGCATTGCGGTCCTCTTGGGGAGGAGCTGACAGGTTAGTAGGGCATCTTCCCCAATCCTGGCCAGGATAGGATGTGTAGGACCAATCACTCTCCAGTTTTCTACAAAACAGAGTGAAAAAGAGGTACCAGAAAATGCCAATTGGAAGATTAATATGCTTGCTTTGGGATGTCCAATCTATCAAAATGGAGGCATCTGGAGGAGGGAGGGCTTTATTTTCAGTGATTTAGAGAAATCTAGCACAATGCTTTGCACATTTGGCTGTTaaaaagacaatttcgtgtgctgaaaatagcatgcagttcaaaaatttgagtgttagtgctaaatctgtc----accagctgtgtgatttggggggacaaacccattattttcagtgagg-tctgagatttggaatctcaatttcttcatctttaaggtaccaaagccaccatctctgggttgtttttattttcaaagaagttaat-----------------------gtgtaaaTTGATTTTTTTACATTGAGAACTTTGTTCGTGt--tttatattttatagtaatttattttataattaatGATTTCACTTTATATTGTTAGTGACTGATTTCATAATCATTTTTCC--------TAAAATAAATTTGTTCGATTTTTCAGCTTTT a score=47885 s hg19.chr6_ssto_hap7 3721063 1469 + 4928567 tttCCCGTCTGGAGTTGGCAGGAGGCCAATTACTGGGACT----ATGTACAATGCAGTTTTCACAAGGACATTTT-GTGCTGGATTAATGACACTGGTTTGTCTAGAGATTTTTGGGTCTTCCAAACAAATTCTAAGACATGTCTGATCTCTTCCTTGTTATCTGCAAATTGAAGAGATGTTTAACAGTTAGGTATGTTATTATGTTTGATCATTTTAT--GTCATGTATGATATGTTCTTTCTCATTCTAAA-TGCTCCGGGGCCATTTGCTCTTTCTCTGTGCAGATCCAATCCTGCTAGGAAG-AACCTCACCCTACTTAGCTGCTGCTGGGTATCAAATAGATGCTGCTCAAAAGGTGGCTAAAGAGCCTAAGTGGAGATCTGCTTGTATTCTTCATTGATGAAGTCTAAATATGAAGCTAGAACTGAAGACATTCCATCAGATTGACTG---TTACAGGGTAGGGAGCTGCAGCACAAGCACAGAGAAGCCAGCAGCTTCAT--CACATCACACCAGCTCTGCAGGGCCAAGGCAGACACACCAGCTCTGCGGCACCGAGGCAGACACACCAGCTCTGCGGTGCCGAGGCAGAGCCTGCGCCCTCTGATGCTCTGTGTCGTGTTTTTTCCCACTTCGCCATGCTGCATTTTCCTTAGGGCTCTGACATCTCCTTCTGACACTGATTTTTTTTTTTGACACTGaatttttaaataattatttttCAAGGTGCAACATTTTGACGTCAAAATTCAGCTAGTGAGATTTCCAA--------AGTCCCTTTCTTCTAATTTCTTATTTCCAAGTATTTTTTTTAATTGCAGCTTAATTTATGATAAGAAGCAGCTGCATTTCTTGACCCCAAAGTACT------------------AGAGTGAATTAATAATTTAACGTGgtgcaaccactgattcaagtgcttttaatgtctcatttaatcctaaagcctgtgctggcctctgagatgtagttactgctgttattctcattaaaaagatgaaagaactaaggtatgaggtgctctagtaactttccaaaggtgactcagctaggagtggaggagcTCCTGGGAGTGGAGGAGCTCCTCAAAAGTGAGGAGTTCCTTTTTGGATACAGGTGGCTTGGCCCCAGA----CTTACACTCTTAGATGTTGTTCTCGACCTTTGGACCCAGACTAGCTCACTGGGACATTAGACTATACAGTAAAGGGA-GAAGGGAATCCTACCTGACTGCTTCATTGTCAGCAGGATGAATAGGAAGGAGGCGACTGCACCAGACAGATTGTAGCCTGGAAAATCCACCATCCTCCCTGGAACAAAGACAAGGAAACGCTGTG------CCTAAGTGAGGCTGTGACACACCCGGCACACTCCATGGCTTCCATTGGTTATGCAGTCTTAGCAGAGAAT---CCACATCAACCCCTGCACAGTCA---GTGAAATGGGCTTGGCTCCATTTCTCTGCAATTACTGATCACATCCAACCCTTTACCTA s canFam2.chr12 5106124 1376 + 75515492 TTTTTGGTCTGGAACAGGCAAGACTCCAGTTACTGGAGCTTTATATGTACAATGCTGTTTTTGCGAAGATTTTTTTGTGATGGATTAAAGACAGCATTTTGTCTAGAGAATCT-GTGCCTTTTAATAAAATTTTTGGTCATGTTTGACCTTTTTGTCATTATCTGCAAATCGAAAGGATATTTAATAATCCAG-GTGTTATGATGTTTAATAATCTCATAAGTCATATATATTATATTCTTTCTCTTCCTAAAATGCTCCAGGGCCACTTGCACTTGCTCTGC-CACATCCAATCATCCCAAGAAGGAACTTCAACTTGCTCCCTTGCTGATAA-TATCAAACTGATGTTGGTCAACAGCTCAGTATAGAACTTACG-GGAGGCCCGCTTGCATTCTTCATttatagaatctaaatacgaagctaaatctgaagctaatccatctgattaacttcttttacaggttaggaaattg----atttatacagagggctggacagcctcctgccacattacatagcttctg---------------------------gcagccctcag--------------tctg-------------gagcctgcgct-tctggtcccctgtccactgttttttccacttctgctttgcTGTACTTTTCTGGGGACTCTGATATTTCCCTCTGACACTGAATTTTC---------------------ATAATCTTTTTATAAGGTACAA----------------TTCAGCCAGTGAGATTTCCAAGAAATGGAAAT-------TTCTAATTTCTTGTTTCCAAGTATTTTTAT-----GCTGCTTAATTGATGGTAAGAAGCAGCCATTTTTCTTGTTCCCAAAGTGCTGTCCTGCATGGAGACAGAAAAATAGATGAATAACTTAATGtgttctaaatactacttcatgtgca------gcctcatttaattctaaagcctgtcctagcctataagacataggta-tgttgttattcttattgcaaagatgaggaaactaaggcagaaggcactcaagtaacttttcaaaggtaacacagctggaagttgaggaccctctgg-----------------aacacagatgctttggttcttggacac-------tcagtccaataTTGTCCTATCCCTTTTGAT------CTGGAACTCTGCATGTGGACTGTATTGCTGGGGCATCGGGGTATACAGTAAAGAGAAGACCGGCATTCTACCTGGCTGTCTCATGGTGAGCAGCACAAGGAAGAAAGAGGCAACTGCACCTGACAGACTGTATCCTGGAAAATCCACCATTCTCCCTGCAAAAAACACAAGAGAAAAATATGAGTACACCCAAATGAGGCTATAATGGAGCAAGCTCACTTTGTGGTTTTCAACAGCTACATAACCACAATGAGGAATCAACAACATCAGCGCCTCCACAGTCAAACAAGGAATGGATTTGGTTCAATTTCTCTATGGTTACGGATCATTTCTGACTGCTTACTTA a score=29606 s hg19.chr6_ssto_hap7 3723216 902 + 4928567 TTTAAGCAATTTTTTAGGTGTAAGG-AAGTCTTGTGACTGAAATGAAAAAACA-CTTGAGGTAAAGGAACAATAATATTAAAAAAACCCCAAACCAAACCAAAGCAAACAAAACTCCTTAGGTTCATCTGTTGTGAGCTTGCAAAACTTATAGAGCAAGATTCAAATATTTTTTCCTGTCCTCCTCCCAACTCCTCCTGCAAAGACTTTCTTTACCACTGTTTTCTACACATGGAGGAAAGGGCAGGAAGGCTCTGCGTCTCCACACTGCAGCCAGAAAGCCAACATTCAGTGCTAGCGC--TCAGAGAACCCGGGACACAGAGAT-GCCGTGGAAAGTGAAAGAAAGAGTAGTAGAAA-GATAGT-CGGGAAAATATCTGTAAG--------------TGGCCTTTTAGAATAGACTTAAAAACATGAATGAATTAAAAAAACAAAAAGCCCAACTGGCAGAAACTGGCAAACCCAGCAACCCCACTGTCCCAGCTGAACAAAAATACTT-CACACAGCTAAAAACTTTAAAACTTACCAGGACAAGGATAGAAGGCTAGTTTTACCATTGAAAAATACAAACTTCAGAGTGAAAGAAATCTAAGACTTATTATATGTGATGTGTCAAGTATTTTATTGAAAGAAAACTTGCTTCACACAAAGTAGAGAAACCAGCTCAGGAGCAATGTCAAGTCAATTACAGTTTCCCCCTTTCCAAGAAACTACTGCTAGTAAGATTTTATGGGACAGGGGTAAAAATCAACATT--TTGAAATGGAGATTTAACAATCAAATGAGTCAGGAGATTGTTGTTACACAAATATTGCCCATTTGCTTTATAAAAAATATGTACTTTCATATAAGATATCTTTAAGGAAACTTATATGAGCCCATTCACAATACCTAGATCGAAAAGG-----------GCAGTATG s canFam2.chr12 5107567 864 + 75515492 TTTAAACTATTTTTTAGGCCTGAGGGAAGATTTCTGACTGAAATGAAAAGCCCTCCTGAGTTAAAGTGACAACAATATTTATTTGTTTTTAAA-----------------AACTTTCTAAGGTCCATTTATTCTGAGCAGGCAGAAATTATAGGGTAGGATTCAGATATTTTTTCTTGCCCTCCTCCCAGCCCCTCCTGCAAAGTTCTTCATCACTACCCTCTCCTAGATGTACAGGAAAGAGCAAGAAGGCTCTGCATCCTCACTCTTCCGCCAGGAAGCCATC-------GCTAGTGCCTTGGGAGAGGCCAAGGTCTGGGGTTCACCTTGGAAAGGGAAAGAAAGAGTGATGGAAATGGTACTACAGTAAGATACCTCCAAGGAGACCACCCTCAATGGCCTTTCAGTGTCGTCTT-GAAACACATAGGAATGAGTAAAAGAAATAGCCCAACT-GCAGAGATTGGCAAACCCAACATGTTCATTACATCAGCATTATAAAAATATTTCCACACAGCTAAAAAGTTTTAAGACTACCAGGACAAAAATCACATGCCAGCTTTAATTTCGAAAACTGAGAAATGCAGAGTGAAAGAAGCCTAAGACTCAATCCATCTGA-GTGTCGAGTATCTTA------------CTGTCTCTCACCAACTAGAAGGACTTGTTCAGGAGC-------TGATGATTGC----TTCTCTTTTCCCAGAAGCTAATGCCAGTAAGATTCCAGAGGGCAGGGG--AAAAGCAACAGTCACTGAAATAGAG---TATAAACCAAGTGATTCAGGAGATTATT----TATAACTGTT-----TTT---------AAAATGCATGTTTTCATCTAAAATAGCTCTAGGGAAACTGATACAAGCCCAGTCACAACACCTAGATCTCAAAGGCCGTTCAAATATCATTATG a score=151095 s hg19.chr6_ssto_hap7 3724118 4434 + 4928567 ATATTTATGTGAAAATGGGGTTGGGTGTTAGAAGACAGTGCAGACCATGAGCACCTTGCCACCTGAAACTTACTAGTCACCTCCCCTTAGACTGAAGGGTGTTGCTGATGCCTCCTTGACTCCTTTTGTGAAAAGCAGGAACATTTTTTTCCACCAAGTAAGAGTAAAGAAAGCCCCACAACATCCATACCAAGCATGATTTCTCAGCCGTGTGAACTAAAATGAACTCACACTTGCTACAGACCACTTCAGAGGC--TTGTGTTCCTGTAGGTCTTTCATGTCAAAGCGGTGGGAGGGAAAATCTACAAGTGAACTCT--CAAAAAAATTGCTCAAATCAATGAAGCTTTCGAAGAATGTTGGGAGAATCCATCTCCA---------GTGCTCAGATAGA---TTGTGAG--AGAATATATCAGGGAGGATAACCACCTTGGACCAGggttcttaatggggaaagaggctgttttgcccttagaggacatttggcaatgtctgggaacattttcagttgtcacgactgggggaggggacatatattgagtagaaaccaggggtgttgctaaacattctatgaggcacgtggcagcccccacaacaaagagtcatccagcccagaaggccggtggtgccgaggAAATGCCCTGCCACAGGGTTTGCTGTCAGG-----ATGCTGAAAAGCTTTGGCACATTTTTTGAAAATAGATAACTAGACTTAAATTGCCATCTTTAAGTAAAAACCTTTTAAAAAGATAAGCTTTTGACCCCTCCGTTTTACTATTTGGATGTAATGCAAGAATCTTCTGAAACTGTTGTTCCTATTAAATATAGTAAATTTTGGTGTTGTCAAGATATATGATCTAATATGCAAATGTATCATCGAATTCTCAAAAACCCATGTTTAATTTAATTTAATTTTCTGGATAAAGTATAAGTGTTAAATTGTAA-------TAATAAGTGGTAGCTTATGTTTAGGCATTAGATGATGAACAATTCTGAATTTCAAGGCCTATCCTGCACTGCTAAAACTCATATCAAAGAAAATTGCAAATTACTACGTATCATGGGTCATTAGAA--------CTTTTTTCAGT-AAAAGCCTCAAATGTT-GCTCCTCAAAATGCCAAGCAGCCATAGTAACTGACTGGTAAGAATAAATTAACTTAGTTCACGAAGTCGAAAGCTTATGTATCTATGTAGACATTAAAAACAGCTATAGTTTATCATATGTTAATACATTTTTATAGAGA------AAGCTAAAATAAGATTTCTAGGAGACAAAGTGAATTGGGTTTTtgtgtgtgtgtgtgtgtgtgACCTTGGACATCTTTCTTTACTTTCTTGAGCCTGTATTTTCTCTGCTGTGTGGTGGAGACAATCAT-CCTAACGTTTTCCAAGCTGTGTCATGACCATGTGACAGAAGAAGACGTTAAGGCTCAGGGACACATGCCCCACATCATCCATGACAAATGAA-AATGTGATCCTGGTTTTCTTGTTTATAATTTCGTGCTTCTTCCTCActcagcctgcttcacgagaacactgtgagggtcaaatgggctacgatcgcactttgaagactgcacagtgggatataaatat--------aagtggGAGGCAGTGTAACAGGTGGCAGCATTTCCCTAAAGGACATTGATTCCGTCCGTATGTCCTACTCTGTAATCTGAGACAATGTCCCCAGCTTCCCGTGGCCATCCTTCACCAGGGAATC--CAAACCACTCACGTGTCTCCCTCTCTCCTTTGGGGCGAAACCTGGTGCTACTGGGTCTTCTCACTTGGCCCCAGATGTA-TCTTCATCCACATAGCAGGTGGTCAGAAACAGGTCAGAGCCCTCGGGTGTGCTGATCAAAGACACACCAGAGAGCCAGAGAGTGTGGGAGAGCCAGAGAGTGTGGAGGCCTCCTCCAG--------GACTTTGGGTGAAGGAGGATTTAAGCCGTCTCACCCCAGTTGAAGGCAGAGCCAAATCCCGGAGGCC--CTGTGAAAATGAGATTGCATTCCGAAAATCAGAATAGCACATTCACCTCCTAACAGCTATAATCCTTTCAACAGTGAAACTCCGGGGACAAGTGGACTTTGGCTGGGTTCAGTTGTGAATTCTGCAGACGTGCACACAAAATCATGACACTGGCAATTCTCACCTTCCCCAGAAAGCCAAGGCCTTCATGGAGGCCTCA-------------TCTGCAACCCCCCAGTTAGGTCCTCACACAGACCCCACCGTCCCACACATCAGCGGGTGCC---ATCCACCCTTCCCTCCACCTTGCCACACATCAAAGAT--TCCCAACTAGTGCCAAGTCTCCACCAGAGCATGGCACTCATCGGGCTGGAGTTGGAAGCAAAACTGAATATCAAACGTGCCATccctcattccactgatgagaaaacagagacccagagaaaggaactgccctctccaggatcagagctctgggccaaggtcccttgtgggctactttattgctctttttactcaggtactttatcTCCCTTTGCTGAGTAATAAAAGGTTTAATTACTCTCAGATGTTTACCAAAGAAATGTAATAACCTTCTCAGCATAATATTTGGGCATGAAGAGTATAATGAT---------AGGCATATTTT----------------------GTGTGTGTTTTTGTTTCTGCCAGATTTTCCTTTACGTTCCCCTTAAGTCTGTGTTCCTTGAGCTAGAG-------------GGGGTCT-CAGATATAGTCTCAGGATTTCAAGAGTTCTCCAGAACAATTTTTAATTTAATTGCAGATTTTCATGTCAATGTAATAATAAAAGCATATGCAGCATTATGATGTTACAAGGTTTGAGCCGA--TTTTTTCCTTAAGTTTCTTTCCCTCCCGTT----ATGAGCAGCCCATAATTGGGTCCCCTGACTTACGGTTACGATTCTTAATGTAAGG-GTTTCCCcctccatccttcagtctagacaaagaccctcccctcactgtagaggatgagagatttggagagaagag--aaacaattaaacATGGACGAGGATAGGAGGGTCTCTTTACCCTGGTTCTCTCTCAATTGGAGTAGAGGGGAATGAACCCCACTTCACCTCCGGTTCCCAGAATGGTAGCGATGCCCACAGATGTCC-CTCTCAGAGT--------GGCAGCAAAGGAAAAGTTCTCCAAGGCAAGAAGTGGCAGACTCTGGAAGGCTCCAACAGTGGGATGAAAGTTTGCTGCCTAAAATGCTGGGATGGAATGTTCCAGCAAGAGGAGAGTGGCATCAAGGACATAACAGTGATCGTCACCACTGTGGGAAGGACAGTGACGACCAGGAAACACGATGGGATAGTGACATATTGTGGGAGCTGATGATGCAAATGTGAGGAGAGACTTCTACACCAGCCCTGCACCACCTCCCACCTCAGAACTTAGAAATCACACGGCGGGTGAAGAAGAGGCTGCTATTAA---ATTAATTG-TGTGAAAGCCactgaatttatctggaaattaccagatgaactcctctgtcagaagacataataatgcttggcatacaaattaaaatccgtaataggaaaatatagaaatttactttatacacctgaat-----gtgtgAAAAGATGCCGCTCATTGCATGCATTCTGTAGTATCATCTCTATGGTACCAAATGCTGGAATT------------------------ATTTGAATTT--TTTATGGTCAGTCACATCAGCGCCAACTCACCGCGTAAAGAAGCTCCGTTTACACTCGCGTGTGTGTGTTCTCACAAATCATCTGCATACACTTTCTCAGAGGTCTGCCTGT-----GCTGAGAACTGTGTCCTAAATTATGCTACATATTATGGGAGGCC-ATTTTGTGCAGGAAGATGTTGGTGTGTGGGAGAGAAAAAAAGGAGTCACAATCTCTGCCATTCTGACTAGAGTCCACCTCCAGGAGAAGCGG-GAAAACAAGGCATAAGCTGCTAGAACTGAGGAGAGGGAAAAACAAGCATCCGGCGAGGGCAGGAGGAACAGCAG---AGGGGAGTCATGGATCTGCC-------TGGCCACCAGAGGGCAGCAGAGACGGGCTCACTGTCGG--CTTCAA-GGTTGTTCCGCAAG--TCGATTCACTTACAGACTCTTCTTCAAATGCGGCGGTCACCTGTGACCCACATTCATAACTCCCTCAGCCACTAGACGACAAAAGAAgccctgagtttaggctgactgagattttcattctagctttgctatacatttgggcaagctttactttgggtaagtctgttctttccaggggtctcaattttcttagtttttacacaggga------tagtatgtgggtggctcacattaaagtatcgttgtaaggataaagtaagaatataatcatgatacaaaatc-------------------------------------------cctatatag------ctat-------taggtgtcattactgggaatggaaggTCTTGGAAAGAAGGTGGATAGAAAAATAGAGGAGATTAGAAATGAAGATAAGAAATCAAGGTCAATCCAAGAAATGTCAGGAAAGTGTTGCTATGAATATGGAGAAGTTCAGGCGAC-GCCATC s canFam2.chr12 5108636 4375 + 75515492 ATATCAATATGAAAATAGGACTGAGCGTTAGGAGACAGCATAGACAGCCTGTAGCTCACCACTGGATACATATCAGTCACTTCCCCTCCGAATGAAGGGGATTGCCAATGC--------CTCCTCTTGTGAAAAGCAGAAACCTTTCGTTCCACCAGGTAAGAGCAAATAAAG-CCTGCAAACTTCATCCCAAGCACCACTACTCAGTCGTGTGAACTAAGAAGGACGCACATTTGCTACAAACTGGTTTATAGATAAATGTGTTCCTTTAGGTCTTTCAAGTTAAAACAG-----GGGGAAACCTACAAATGTAACTTGGAAAAAAAATTGCTCAAATTAGCAAAGCATTTGAAGAAAGTTGTGAAAATGCATCTTAACCTTCATTGGTGCTCAGAGACAAATTCATGAGCAAGCGTAAACGGGGGGGAATAACTGCCTTCGACTAGGGTTCTGAATGGGAAAATTGATAGTCTTGcccttggaggatctttagcaatttctgcagaagtttttggtggtcataactggggtaagagg---gcattcagt-----------gtgctgctaaatatcctacaattcacagaaaagcccttagatcaaagaattatccagcccaaagtgtcaataatgccaaggAATAACACTGCCATAG--------ATCATAAATCTATGATGAAAACTTTTGGCAGATTTTTTGTAAATAAACAACTGGACTTACACTGCAAACTTTAAATTAAAACATTTTCATTACA-AGGCTTTTGACATTTCTATTTTACTATTTGAATATAGGCTGAGAATC---------------------AGAATATGGTAAAGTTGGGTATTGTCAAGAAATGTGATCTAATATGTATATATATCATTGAATGTTCAAAAACCCATG-----TTTCATTTAATTTTCTGAATAAAGTCTAA-TGTTAAGATGGAATGGTGAGTGATAAGTGGTAGCATGTGTTGAGG-------TGAATAACAATTCTGAATTCCAAGGT--------CACTGTTACAATTACTACCAAATAAACTTACAAATTACTATATGTCATGGGTCATTAGAGGTGGGGTTTTTTTTCCAGTAAAAAACCTCAAATGTTAAATACTCAAAATGCCAAGTGACCACAGTAATAACCTGGTGAGAATAAATTTATTAAGTTCACAAAATTTGAAGTTTATATATCTGTATTAATTTTAAAAATAGATATAATTGATTATATGTTAACACATTTTTATAGAGAGAAAGCAAAGTAAAATAAGAATTCTGGAAGAC-AGGTGACTT-----------TGTGTTTACTTCTGTGACCTGAGA-ATCTCCTTTTATTTTCTTGAAACTCTCCTTTCCCTCCT--------------CTCATCCCTAACATTTTCTCAGCTGTATCATCACCACATGACACACAAG-----TGAGGCCCAGAGACACAAGCACAACAACATGCATGACAAATGAATAACATGAGCCTACTTTTCTGAGTTGTAATCTAGTGC-----CCTCACCCCTCCCACTGCACAGCAATACTATAAGGATCACATAAGCTATGGCAG-ACTTTGAAAAACATGGAGTGGGGTACAAGTATCTGATGAAAGTTGGAAGGTATAATGGCAAGTAGCAGAGTTTCCTGTGGGGGC--TGA--CTGTCCACATGCTCCACTTCCTCATCTTAGTCGACTTCCCCAATTTCCCATGGTCATCAGCTGCCAGGGACTCATCAAGCCACTCACGTGTCT-CTTCTCTCCTTCAGGATGAAACCAGAAGCTGCTGGGTCTTCTCAGTGGGTCTCAGGTGTACCCTTCATCCATGCAGAAGGTGTCCAAAAGGAGGTCAGGGTCCT-GAGGGTGCTGACTGGCGTGAGAACTGAGAGAC--------------AGCCAGATGGTGTGGAGGTAGCCCCCAGTGACCCCTGGCTTTGGGTGAAGGGAGA-CTGTGCTGTGTCACCTAAACT--AGCACAAACCTAGTCCTGGAGGCCCACCCTGAACATGAG-----ATTCCAAAA---AGAATAGCGTGTTCACCTCCTACTGGCTGTAATCCTCAGAAAAGTGAAACTCC---GACAAGTGGACTTTGACTGGGTTTCGTTATGAGTTCTTCAGGCTTGCAGATGAAATTGTGACATTAACACTCCTCACCAGGCCCAGAAAGCCAGGGCACTAACACTGGGCCCAATTTGACAACTAGTCTGTGCCATCTCCAACTGGCCCTCACACAG------------CACCTAGTAGTGGTGGTCTGTCCTCAACCTTTTCTCCACCTC-CCACACATCAAGGGTCCCCCCACCTACT-----GTTTGCTTCTGAATGCAGTTTGCTAGGGATTAGAGTTAAAAGCAAGACTGAAAAGCAAATGCCCCATCTCTGCTTTTACTGGTGAGAAAACAGG---CTAAAGAAAGGAATTACCCTCCCCAACATCATGGCACCCAGCTAAGGTCTCATATGTGCAAGTTTATTGCTCTTTTTATCTTGATTCTCTATTCCTCTTTGCTGAGTCAGA-------TATTGACTCTGAGA----TACTAAGAAAACTTAATAAGCTTATCAACCAGATGTTTGGGCACAAAAATAATAATGATTAAAACTACAGGCACACtttcttttttttttttttttttttGGCATGTGTCTTTGTTTAGGTTAGATTTTCCCTTAAATTTCCCTTAAGTCAAT-TTTCTTGAATCAGAGTGCAAGTCTCCCTGGGTTCCGCAGAGATGTTCTCAGGGATTCAAGAGTTCTCCAGAATAATTTAAAATTTAACGTTAGATGTTCATTTCAATATAA-AATATAAGCATTTGTGATATTATGATGTGATATGGTTTGAGTTTATTTTTTTTCCTGAAGTGTCTTCACTTCACAATCTGAATGATAAGCCCATATTTGGG-CACCTAACTTGAAGTTGCTATTCTTAATGTAAGATTTTTTTCCCTTCATCTTTCAATGTAGGTGAAGACCCTTCC--CACTGTGGAGAAAGAGGATTTTGAAGAGGAGAGAAAAATAATTAAACATTGTTGAGCA--------TCTCCTGACTC----TCTCTCTCAGGTAGAT----GGGGCAAGTGCTCCACTTTACTTCTGATTCCTAGACCGGCTGCAGTG-CCACATACTTCCTCTCCCACAATAACATGAAGGCAGCAAAGG-AAAGTCACCCAACGTAAGAAGAGGTGGACCTTGTAAGGCTCAAATGCTGGAGGGAAAGTTTGCAACCCAAAATGCTGGTGTGGAATGATACAGCAAGAGGAT-GTTGTGAAAAGAAC---------ATCAGCACCAATGTGGGAAGGACAGTGACCACTAGGAGGCAAGATGTTACCAAGGCATATAGTGGGAGTCAGTGGTGGAAATATGAGGACAGCCTTCCACAGCAACCCTGCATCATCCCT--------ACCTTAGAAATAACCC------TAGGCAGAGGGATGTTTTTAAATTATTAATTGTTATGAATGCCACTGACTTTCCTCAGCAATTACTAGCTTAATTCCTCTGCCAAAAGGCATTATAGCGCTTGACATAAAAATTAGGATCAGTAATAGGAAAATACAGAAA---ATTTTTTACACTTAACTTTGTGGTGTGAAACTATTCTACCCATTGCACATATTCC---ATATCATTTCAATTATATAGGATGCTGGAATTCTCCCAGAAATCTTTAGTACCTACCTTTGCATTTTATTTATGGTcagtcacagtagtagcaactgcccacttaaggaagct-catttaaatttttgtacatctcttctcaaaaagcccttacatatactTTCTCA-AGGTCTTCCAGTTTGGAAATAAGAACTCTGTCCTGAATTATGCTATGAATTACAGGTGTCCGGTTTTTTGTAGGGACATGTTGACACGTGGGAGAAAAAGG-----------------------------------------CAGGAGATGCTGCGGAGACCAGGCA-----------------------GGCCGAACAAGGATC---TGAGAGAAGACAGAACAGAAGGGAAGAAGAATCATGTATCTACTAGATACATGGTCACTAGAGGGCAGCAGAGACACGCTCACCATTTGGCCTTCACTGGCTTTTCCCCAAGACTTGATTCACT---ATTTCCTCCTCCAAATACTGCTATCATGCATGA--CACATTCATGACTCCCTCAGACAGT--ATGACAAAAGGAATCTTgagcttaggatatctgagattttaattctagttttgctatgaatttaggtaaactttactttgaataagtttatttgt----agggctttaatttccttagctttaaaataaggATAAGGCTAATATATGCACTATTCATATTAAAATGTTCCTAAAAGG-TAGTGTGAGAATATAATCATGACACAAAATTTATTTTGGTAAACCTAAATTTTAGGTTATTTGGTAAACCTATACCTAAATAGGTAAATCTATTTAGGTATAGGTTTCAGTAATGGGAGTGACA--TTGTGGAGAGAAGGGTGAC--TAAAATAGAGTAGATAGGAAAT---GGCAAGAA---AAGACTAATGCAAGAGGAGTCAGG--AGCCCTGCTAATAATTTGGAGAAATTCAGGTGATGGCCAAc a score=5278 s hg19.chr6_ssto_hap7 3729050 179 + 4928567 AGGCAGTAGAACTTCTGAATAGGA-------AAATGCCCAAACATTTAGGGATGGAGGACTGAGGTAT-TCTTAGTTCTGGCTGACCTACAGTCTAA---GTTGAGCTCTTTACATACATGGCTGTCATATACTT------------TACAAAAAGTGTCTGACAAACCAGTTCCTCTAAAACT-----------------TTTAATTTTAAAA---AATTT s canFam2.chr12 5115838 215 + 75515492 AGGCAATAGAACTTCTGCAGAGTGGTACTTGAAATACCCAAACATCTAGGCATGGGGAACTGAGCTATATCCTGGTTCTGACAGACCTACAGTCTGAAAGGAAGAGGTCTTTGTA-------CTATCAGATCCACACTGTCTCAGAATCCAAAACCTATGTGACAATCCCATTCCTCTCaaattaaaaaaaaaaaaaatagtgtatttttaaaattaaattt a score=23462 s hg19.chr6_ssto_hap7 3729548 861 + 4928567 TTTACTTTTAAATTTACTTTTATGAAAGAGTTACAGAAGTTTAAGA-CAATCACAATGATCATCTATTATTTTTTGAAAATGATGAAATTACCTAAAATTGATTCTACTGCAGGTGGGAGCCTATAAGACTAAAGTTCCCAGGAAGAGATGTAAGCTTCGGTGAAGCCCACCTCAGTTGACTCCAAAACTAATGCAGATGCCCC-CTTGGGGAATTGCGGGGAGGGGGTGTACAGAATGTGTTAATACCATCACACTCCTCCCAGGACCCCAAAGAAGCTGCACTCACAGAGATATCCGGGCATGTCTCACACTGGAAATAGGGGACCCTTCCAAATATTGGGAGAAAGAAGGCAAAGAAAATCATACCGATCTACTAAGCCTCCTGCATTTGCACCCATCCAGCCTGCCATTCATCCTGGGTTCTTTTACTTGGTCCTCTTGGGGCCTCTGAGAGGATCTCCATCTCTGCGAAGTGCATTCCCCACCGGGCTGTTGCAGTTCCACACATGGCCAGTAGATGACAGGTTTGTTCAAGAACCGCCTCCAAGATTTTACTACTGCACCGCGATTTCAGAGTGGCGGGAAGGACTGAGAGTCCCATTTAGAAACTTCCCAAATCTTAACTGCCAATATCTTTCTTTCTAAAATTGTGTTTTTGTATTTCGTGGTAAACTCAGTTCAAAGCCGCGGATGGGGGCAGGAATAGGAAAACTGCTGCTGCTGCTGAATATGCTTCTCTCTCTTAAAGGTCCCAGCAGAATTCTGCCACTGAACCACCCTGGGAGAATGCGGGGgaaagagaggag----------gagagaaggacagagagagagagagagccagagaggatatgagggagatagggag s canFam2.chr12 5116061 783 + 75515492 tttacttttaaatttacttttatgaaaaaactataaaagtttaaaaaCAATCACTAATATCAACCATGATTTTTTGAAAATGGCAAAATTAAAATAAATGAATTCCACTG----TGGGTGCCTGTAGGAGTCAAAT-CCTGAGAAGAGATATAAGCACCAATGAAGCTCGCACTAGTTGACTAGCAAACCAGCATTGATGCCTCACTTGGGGAATT------AGAAAAATTGCAAATGCTGTTAATGCCTTTCCATTCTTCCTAGGACCCGAGAGAG--TGCACTCACAGAGATAGTTAGGCATGTCTTGCACTGGAAAGAGGAGAATCTTCTGAATGCTAAGAGAAAGAGTGTTAAGAGAAGCACATCATCCTACCGAACCCCTTGCATTTGCACCTGCTTGCCCTGCCAAAC-TTCTAGGTTCTT-------GCCCTGCC-AAACTTCTATACTCATTTTCCACTCTCTACACCACAT--CCAAGAGGGTTACTGTAGTTCCTCATGTGGCCAGTAGATGACAGGCTTGTCCA----------CTGAGTTTTAAGTA-GGCACCATGCCTTCAGACT---------------GAGTTGTATCCTAAAACGTCCCAGATTTTAACTTTCAACCTCTTCTTTTCATAAATTGTG----------------------------------GAGAAT-GGGGCAAGTATAGGAAAA---TTACTGCGGTCCAGTATGCTTCGGTCTCCTCAGGACCTTAGCAGAA-TAGGTGACTGAACCACTTGGAGATGAGGATGGGAATCATGAAGAAACATCTCTGTAAGCAAAGATTAGCAATGGAGGGAAATCCA-AGAATAGTTGGAGAAATTAGACAG a score=2217 s hg19.chr6_ssto_hap7 3744550 52 + 4928567 tggcaggggtg-ccttgtggctgcaGgctgggtatagaaactcaggctcccca s canFam2.chr12 5123632 53 + 75515492 tggtaggagtgactttgtgacatcatggttggtgtaaaaattcagactctccg a score=65524 s hg19.chr6_ssto_hap7 3744645 1779 + 4928567 tcatcagcgctcccacatggcctctactgacacca---------ggaagggagaagtgcctccttacacctggacagtggtgaaagtcccagctttctacttggcctcctctgacaacaccttggcaaagtgggtgaggagtgcttccttgcaacagggc-aggtggaagtccaggctcttcacatgggcttcactaacaccacagtgtggaggtggctgattactgata-agcaggggcaaaagtcctaggtccccagttggcttcctctgacataagcctgatgggtctaggtagtgtctcattatcgccaggcaatgggataagacaaagctcctcactcagtgtttgctgactgaggcggga-tggaag------cccctgatttttctgtatttgactggagtagtgcggttactgtca-gttatctgcctgg-taggctgctctttcttgttcccttg-gatagagaaacatgctttccttaggatatttttgtctgtgactactgatgtttcctgttttccagtttctccagcactcattcctggatatattaggcagaaa--gaagacctatgaaactcaccactctgtcattcccaaatcccatggtctgaggccaacctgc-ttctcctctccatcattcaagggctttttatgtctgtctgtagctgtacttagcaggaggaataggaagaattgt-acctacttcaacttgtcttagaaccagaaatctctcaccata---------tttttTAAAATATGTTTTTGTCATATATTAAAATATTATACATCTATCCTTAGATCCTTAAATAAACATATAATCTATCC--TTAGAGTTAATTTGGTAACAAAAATAAAACAAGACTAAAAC-----------TATTAATTATGTTA----AAGCCATAAAAAATATGCAAATTTTTTCCCAAAATAT----GGGAAATGTGCGTGTGTGTGTGTGTATCTCC--------------------------TATGTATACACAT---------ATACCATATGACATATACACATAAAAAAAAGACATAAAATGAAAATTGCCGATGTATCAATACCCGGGGGcagggagtattctcaggtttaactaaatactcatattcaagtttttaccataggccacacctggctctcagattcacttagaaggatattagacagaagtcaaagtatgccaaagtg-ctgaatcaggtctttttcttcagtgggagaagttcttgaaacagtccataatttattccaggtgctagtttcatactctgccc--ccatcccccaagtgacaactcaggtacaaggagctgaatttacacctgtagaagttgtgtccaccctagcttagaatcctcatgtcatctacgagctagtacctcttataacaaacccatgggcacagcttccagagtccctgtaaag----ggcatgctcagttacaagggtcactgcatttggaaatacccaaactatgggtccccgtcatttgttacggttcatgaaatattcttcccagtaaagatacaaaatgccaaccagaagccatttgtgccataagcaatgttgtctaaaaatccagctgacattcttcctccatcaggtttccagaaaacagctagaaaattagcctaagattaaatacatcatggagaagtagaaagggtgttataaagcatttatccacaAGATTCAAAATGAAATACAGTTAATTTTGTCCGTTTTAAGACATTATTTCAACCTTCAAATTATTTAAAAGAAGTACATCCTATATTTTGTGTGCTTATTCA--AAAAAGGCATGGTAATACTTA---TAAAAAGACtttaaatatttttataagttttaaatat s canFam2.chr12 5123897 1779 + 75515492 aattcagactccccatgaggcctctgcttatactacccagactggcagatgaggagcatcttgtaa-----gggtagtggtaaaagtatgagatttccacttggcttcttgtgacaataacctggcagagaaggcaagggctgcctcgttaccactgggttgggtagaagtccaggccccctatagagacttcactaatgccacagtgtggaggtggcctattactgatagagcagtggtgaaagtcctggatcctgagtaggcttcctctggaacagtcctaatgggtttagagggtgcctttctatggccagggtgggtggta-gtctaggctccccactcagcctttgctacctgaaatgggagtggagggaggggacacagatttttctgtagt-----agagtagtatgattatgcctacatgttctgccttgctaggctgccctttcctgtgtttttgaggtagaaaaagatcatttccttaggatatttttgtctgtgcctactggtgtttcttagtttccagtttctccaacacttcttcctgaatacattaggcaaaaaaggaaaatccaaggaactcacca-tatgtcattcctcagtcccagggactggagtgaatctgccttcttttctccacctttcagagtctccttttgcttgtctttacctgtacttaat-ttaaaaatgggaagaattgttatctactccatcttgtcctaaaaccaaaaatccctcacCATAAAATTTTGATATCTTAAAA-----------CATAGATCAAAATTCTGTGCACTTATACCTAGAT-----AATTATGATATG-TTTATTTAATTTGAATTG-TTTAGTAACAAAAATAAAGCTAAAATAAAATAGCAGGTGTGAGATTAATTATGTAATAGCAAACTATGAAAA-TATGCATATTTTTTCA-AAAAGATCACAGGAAATtatatatatatttatttatatttatatatatttataacacaacttatatattatatatatacatTTTCCATGGATGCCATGTCACATACACACATGTGTATAAAAAATAAACTCAAAACTATCTAT-TATCAAGACTCAGGGA-------TCTTCTTA-----CACTGACTATTCAGATCTCA-TTATTATCCTAGACTATGCTTGGCTCTCAGATTCACTCAGTAGAAT----GACAGGAATCAAAGCATGCTAAGGGGACAGCATCAGATGTTTCTCTTCAGTGGGA-AATTTATTGAAAAAGTCCATAATACAGTCCAGGTGCTAGT------CTCTGCCCAACCCACCCCGAAGTTACAGTTTAGGTGCAAGGAGACGAATTTACACCTATGAGAGTGGAGTCTGCCCTGGCTGAGCATCTTCATCT-GCCTTGGAGCCAGTACTTCTAATAACACCTCCATGGACATAACTTTCAGTCCCCCTGCAAGGACATGGCATGCCCAAT-ACAAGGGTCTCTGCATTCAGTGATGCTCAAATTGTGAGCTCCCACCATTTGCTATAATTAACCACATTTTCCTCCCAGGCAAGA-----------------------------CCATAGGCAAGTTTGTCTATAAATTCAGCTGACATTCATTCTTTATCAGATTTCCAGAAAATAGCTACAAAACTAGCCTGAGATTAAATTTGTCATGGAGAAGT----------TTTTAA--CATATACCCACAAGAATCAATGTGATTTACAGTTAACTTTTTCTTTTTTA-GACATCATTTCATTTTTCAAATTATTTAAAAGAAGCACATTCCATATTTTGTATGCTTATTTTTTAAAAAGACATGGTAAAAATTAGTATAAACAGattttaaatgtttttattttttatttttat a score=27567 s hg19.chr6_ssto_hap7 3746428 1079 + 4928567 taagtaattttataaataaaattaCAAACCATTTAAGTGACCTAATTAAATCAAACACACTTTGAATATGCACATAAGAAAAAAATTAGTTGAAGCATCCTGACTTAAGAAATCCTTGATCTTTCATAAGGTGTCTGAATACTCAATGTCAAAAACACTTATGAAGAATTAAACACTGTTGACCACAAGAGGGAAACCTAGTCCCAGTTATACTATAAATTAGAAAATCAAGGGAAAAATA----TGTGTCCTGAG-AACTTTTGAAATAGTCACATATAAACATAGTATACAAGAAAAAACCAACCATCATCCCTACCCAAGGATATGTTTGTGGTATGAGTGGTTTTAGTGTTTTGAGTGGACTGGTTCTTGGACTCCACATATTATTggctacagagatagagacttga---------------------------------------------tttagaaa----atcacagttgc-----cactt----tctaagtaagcccttgaccaaa-------------------------agactagatttcttta-aacccagttttctcag-gtaaaatggaaatacaactattatctaATAAATATA--AGTAAGCTTTAGTGTCATAGTCA-TAGCAGTAGTATTTTCAATTGGTAAAAAGAAACTGGACCCCAAAAAAGAATTTCAGTGAAAGCAGTAACAGTCTTCTGGCATATTTCTCACCTTTCTTTCTACCTTAAAGG-TTCAAAGTTCCTAAGTAATCTCAGAAACCTAAA--ATAGTTTATTCTCTATCCTCACTATTGGTTTTTAAAAAACATTTTGCAGCATGGACCACTGCTCGTGTAcagatgctctccagcttaacaatagggttatgtcccaataaacccattataacttgaaaatatcttaagctgaaaatgcatttaatacaccaataaacccatcataaagttgaacaatcataagccaaattataagtcagagaccatctgTATTAGCTTAAGTCTTGGAATGGTTTATTTTTTAGATGCCATTTAGCCACTTATATTCTCTTCTATTTTATTGTGAGAACTAAT-TCCCCTCTTACATTCTGTGCTTGACCCATGCTATACTTAGTGTGAACAAGAGCCACCTTCTTCTCATGACTTCTATTTTT-TGTGAAAA s canFam2.chr12 5132270 980 + 75515492 TAAATGTTTTTA-------AATTGTA-----TTTAAGCAATCTAATTAGATTAAACACACTCGGGAAGTGTACATGAGGAATAAACTA----AAGCATCCC--------AAATCTTTGACCTTTCAAAAACTGCCTGAATACTCAATGCCAA---CATTTATGAAGAATTACATGCTATTGACCACAAGAGGGAAGCCTTGTACCATTTTTACCAGGGATTAGAAAAGCGGGGGAAAGAGAAACTTTTTTCCTGAGAAACTTTTAAAATATTCATCCGTAAGTACAGTGTACAGGAGAAAA-CAATAGTCATCCCCTTTCGAGACTGCATTGGTGGTTGAAGTGGCTTTAGTATTTTGAATACACTTGTTCTTGG-CTCCACATGTTACTGGCTACACAATTAGAGACTTGATATATTTTTTTTGCACATTTAATTTTTATCTTTAATTAATCCATTTTTAGGAGACATATCACTGTGGAATGTGTACTTTGGATCCAACCAAATCCTGGGTTCAATACCACTGTGTTTACTTCCTAAGTGGGACT---TTTCTTTAGAACCCAGGTTTCTCAGAGTAAATTGGAAATAAAATTATTATCTAGTGAATAAAATAGTAAGGTTTAACATGATAGCTATTTTTAGTAGTATTTTCAATTAATAAGGAAATACTT--------------ATTTCAGTAAAATCATGAAGAATCCTCTGGCCTGGATCTCTCCTTTCTTT-TACCTTAAAAATTTCAAAGTTCAAAAGTAATCTCAGAAATACAAAATATAAGTTCTTCACTATCATCCCTCTTAGTTTTTCTAAAAGCTTATTCAGCATTAACCACCTCTCATGTAT-----------------------------------------------------------TACCCTA-----------------------------------------------------------------------------------------TTTAACTCTTAAAATGATATGTTCTTGAGATGCCATTCATCCACTCTAG--CTCTCCCATCCTATTATGTTCACTAACATTTCCCATTGTTCTCCATGCTGGACCCGTGGCACATTCAGCGCAAACAGAAGCCACCTCCTTCGCATGACATCTATTTTTGTATAAAAA a score=2434 s hg19.chr6_ssto_hap7 3747507 45 + 4928567 TTTCCTTCACTCATTCATGACATTTGGATTTGAAATCTTACCTAC s canFam2.chr12 5133449 45 + 75515492 TTTCCTTCATTCATTCACAATATTTAGACTTGAAACTTTTGTTCC a score=8020 s hg19.chr6_ssto_hap7 3747571 176 + 4928567 ATTTTCTACCATCTTTC-----------TTATCAGGAGGCTCTAGTGATTCCTTCTCCACACTTC-TAACTTCTCATCTTCACACTCCTTGTCTTCCTAACTTCACTACAGTAAGTGTTTTACATGTTTAGAACTCAGCTCCTTTACTATGATTGCTAACCATGTACCTTAAATAAACCGTCTTCTAG s canFam2.chr12 5133577 183 + 75515492 TTTTTCTATCACCTTCCCCTAAACCAGTCCATCAAGGGGC-CTAATGATTCACTCTTCATATTTCTTAACATCTCATCTTCACACTCTCTGCCCTCTTAAATTCTCT---GTGAGTGTTTTGCATGTTTAGAACCCAGCTCCTTGGCTACAATTGCTGACCAAATTCATT-AATAAAACATCTTCAAG a score=28084 s hg19.chr6_ssto_hap7 3749978 732 + 4928567 AAAAATTATATGAATTAGATTGATTGAAA-TTGATACTTTCCTAATTCTCCTCCTTCAacacacagacacacacacacacacacacacacacacacacacgtatgcatacaaacacaTCTGAATTCTATAAAATCATTCTGACCTTGATGAGATTCCATAGTTTAC---TCATGCAACAGAACATAATGTCTAA--ATGAAGTTTCTGGTCTCTGTTTTACATGGATGATTGAGTAAAATCATTCCCTATTCCTGGAAGAATAGCTAAGAA-AGGATTCACAGGTGAGGACATGCGTTTTTTCAG---AAGATGAGAACAAAGATG-------AGAAGATG----AGAGCA-----------ACAGAATGTCCTATATCCTAATTCTCTGTGCTGACTTCGGAGTGGCCAATATGATA----GAGATGGAAGGAACTCTGAAAACAAATTGCCAGAATTTCTAAGGAACAGGAGATG---TTGAGTGAGTGAATCAAGCCATGGACTGGCTGTATGGGGGCAGCTATTAGAGACAACTACCCTTAGACTTCTTTGGTGATTGGTCAAGCTAATCTTTTCCTTCAGAGTCTCTCAATTATAAGACTTAGCTTGTGCCATTTAGAACAGACAAGAACAC-AGAGAATTATAGAACAATCTGACTACAGGTTCTCAAGTTATAGCAATGAAACTTGTAGTTGGCCGGCAGGAAAATATTCTGAGATGTGGATTCAAAGTTTCTAAGT-------------GTGCACACGTACACACACACACACCCCT s canFam2.chr12 5133775 736 + 75515492 AAAAATTATATAAATGTGATTGAATGAAAATGGAGACTTTTCCAGCTCTCCTTACCCCAAACACA------------------------------------------------CACATCTACATTCTATAAAATCATTCAGACCTAGATGAGATTCTACATTTTCAATGTCATGCAATAGAGCATAATATTTAAGAATACCATTTCTTGACTCTCTCTTACATGGACAGTGGAGTCAGGTCACTTCCTATTCCCAGGAGAATAGCTGAAAAGAGGATTCACAGGTGAGGGCG-GCACATTTTCAGGACAAAATGGAAACAACCTTGCGTTGCAAAACAATGCAAAACAGCATTTCATTGCAAATAGAATGCCCTGTATTTCTGGGATTTGTGCTGGATTTGTAACAGCACAGATGATATGTGGAGTTGTAGGTGACTCTGAAAACAAGCTGCCAGAATGTGTAAAATACAGGAGCTGGTACTAAGTGAGTGAGTCAAACGATTTATTGGCAATATGGGGGCAGCTTTTGGAGGCAACCAGTCTTAGGCTTCTGTAGTGATTTTTCAACCTAATCTGTCCCTTCACAATCTCTCAGTTATTGAATTCAGCTTGTGCCTTTTAGAACCCACAAAAAAACTTGGGAATTATAAAACAACCTGACTATAGATGTTCAAATCATAACAACAGAACCTGTGGTTGGCTTTCAGGGAAATATTCTGAAATGTGGATTCCAAATTACTAATTTCCCCCCGCCCCAACACACACATATACACACATGTACACTT a score=56549 s hg19.chr6_ssto_hap7 3751307 1292 + 4928567 AAGCCCTAACTTATTTCTCCAGAAGAATATGTCCTCTGGTTTTAGACTTGGCACTGTGGGGAGAACCAGAGTGATCTATGGTGGATATACACACAAACATAGACACACATATTTGCATTTAGTAATTTTTGTAAAatttccatttgcttctctgatcctgtctgtatctttgggaatagatgtaagaatattacatctctcaggcttgctctgccccaggtttctgaacgtggaatacatttctccagtgaaactcagtattatgagatttgggaggtggaagttaggccacagccatct----CAG-GGACA----GGTTTCACAGACATGAGTTTTGGCAGCAGCCTTGTGTTCTAAAGACATTTACT-CCTAGGGGCTCTAGAGGATCTGCAAcatcagcagaagcttcctgtgggttcctgatcttttaaaattaggggtctgcagtgacttgtgctcctccagaccccctaa-cagttttaagggctaattccctgtaatata------tt--------cagttctgcttagactg-attacagggattcctatttcttgactgaattctCATGGCTATAGTGGCTCGTC--ACCATTTGACATCACCAAGAAGTCCTCATTCAGGTGCCTTTGGAAATTCCCTCAAACACACAGGAAATTAGAGT-TTGAAAGAAAACGGAGAACCATGAGCACTGTCCAAATAGGAACTTCTCTCCTATCACAGAGAAAGGGAACTGAAAGTCATTTCTCAAGTCTCCCAAATTTAGTAATCTCACAAGAAGAACCAATCAGTGTTCTAGGACTAAACAGTGTCATAAGTTGCTGAGCAACAACTTGGATTGAAGATGCTATTATAATA---------------TATGAAATGTCTTTGAATTTACCATGTTTTTCTCAAGCACCATTTAAGAACAAGGCATTATGGCAGCCAGCAAAGGGCAGACATAGAAA-ATTATACATGGTTTTGCCTCTAAAAGAGGAGATGACAAGCTTAAATCATAGGATCAGACTCTTAGCACAGACTGATACCATAG-GCTCTCATCTGGCCCATTCTCCTGACTCTTTACCTTTCAGGAAAGGTATTCCTGAA-AATTGCAGGA-GAGACCATGCTGTAGGTCTCTTTCTAGCGATCTAGGAGTTAATGCCACAGTGTGTTCAAAGCCCTTTGATGCGATCAGATAATCAGTAATGTAT--GGAATATTTGTGTTCATAACTCGTGAGAACGGCTGCATGGCAGGACAAGACCCCAGCACAACAGTATGGAAAATCCACCCTAAGCAGACATGTCATGACTGATGTTGAACAATGGACTCACCA s canFam2.chr12 5134548 1287 + 75515492 AAGCCATAACCTATTACCCCTAAA-----TACCCTCTGGTTCTAGGTTTGGTACTGTGGGAGGAACAAGAGAGA---------------------------GGTATACATATTTGCATTTAATAATTTCA--AAAATTCCCATTAGCTTTTATG-TGTCATCTGTATCACAGGAAATAAAAGTAAGAGTATTACATTTCCCAGGCT--CTCTTGCCCAGGAT-CTGGATGTGGCCAACAGGCTGTCAGTGAAAGTTAGTATTATGAGATTTGGAAGGTGACAAGTAGGTTGAAGCCATCTGATGCAGTGGACACAAGGGCTTCACGGACAGGACTCTTGGGAACAGCCTTGTATTGCCAAGACTTTCCTTTCCCTGGAGCTGTAGAGGAGCTGTGATGTCCGCAGCAGCTTCCCATAGGTTCCTGATCTT--GGAGTTAGGAGTCTGCACTGACCTTTGCTCTTTCAGGCTTCCTAAACACTTTAAAGTTATAATTCCCTCTAATACAGAAGAATTGTAACAAACAATTCTATTTAGAGTGTCTTACAAGGCCTTCTATTTTCAGACTGAACTATGACTAGTACAGTAGCTCCTCCCACCATTTGATGTCACTTTTCATACCTCACTGAGGTGCCTTCAGAAATCCCCTCAGACATA--GGAAGCTAGAATATGGGAAAAGAACAGGAGACCATGGGTAGTGTCCAGATAGAAACTTCTCTCCTAGCATGGAGAAAGGGAACTGAAAGTATTTTCTAAAGTCTCCCAAATTTGGTAATCTCATGAGAAGAACCAATCAGTATTTTAA-ATTAAGCCATATCATAAGTTGCTGAGCAACACCTTAGGTTGAAGTTGCTGTTATGACAAGTAAAACATTTTTCTGTAAAGTGTCTCTGAGTTTACCATATACTCATTGAGCTGCTTATAAGAACCAGTCAGTATGATAGCTAGCAAAGGGCAGGCATACAGACATTATACTTGTTTTTTCCTCTGAGAGAGGAGATGACAAGCCTAAATCATAGGACCAGACTCTCAGCGGAGATTGATACTATAAAGCTCTCATCTGGCCCATTCCTTTG---------CATCCAGAAAGTGTATTCCTTAACAATCTTAGGGCAAAACTGTGCTGTGAGTCTCTTCCACATGATCTAGAAGTCAATGTGAGAGGGTGTTCAAAGTCCTTAGATCCGATCAAATAATCGGTAATGTGTAGGGAAAAAAC---CTCATGATTTGTGACGGTGGCTGTGGAGCAGGATAATATCTCAGCACAACAGTATAGAAAATCCACCAGGAGCATATGTGTCATGACTGATATTAAACAGCAAACTCACCA a score=12028 s hg19.chr6_ssto_hap7 3752935 302 + 4928567 TCCGATGGGCTCCCTCACTGCCAGG----TCACTCTTCAT-GGAAGTATTTGTATTCCAGTCCTTTCT----GTGGAAAGAACTTAACATTCTCCTTTTCATAACACTGTATCTTCAGAAACAAGAGAGTCGAAGTCTCCTAATTTTCAGGACTGTCTATGTTGAACATCAAAATATATTCTTTAGAGCAGATCTTTAATAATCATATGACAAGAGAAAAACTTTCATAATCTTATGACATGAGGGAAGGAATATTAAAGCCGTTCTGTGAGTTATTATCTCTAACGTTCCCAATAGAATAGGCTTTGCCA s canFam2.chr12 5135835 302 + 75515492 TCTGAGGAGCTGCCTCACTGTCAGGGCTCTCTCCCTTCATTGGAAGTATTCAGATTCCAAGCCTTTCTACATGTGG------TTTAA--TTTTCCTTTATATTGTACTGTATGGTCAGAAACATGAAGGTCAGAATGATTTAACTTTCAGTTTTTTCAGTGGTGAATATCAAAACAAATTCTTGGGATCAGAACTTCAATAATT-TATGACATGAAGAGAGCTTTCAGAATGTTATTACCTGAGGGACGTTACGGGAAAGCTCTCCTGCAGGTTATTATCTCTATTTCTCCCAGTAGAATAAGCTCTGCCA a score=69396 s hg19.chr6_ssto_hap7 3753551 1876 + 4928567 TATACTCTCTCATATTCATTGACCTGAAT-CCTCAAATGAGGTGTGTCC--ATTAGTCAACTCCAATCTCTTGTCATATATAAGATGGTAGAGATGAGAAGAAGGTAGCTCCTTTACAGCCCACTATTTCCACTAACTACTACCTGTGTTTCAAGATACAGCCTTTCATCCTTCTCCAGTGTTGAGAGTGTTGAACCTCAGAGTTTCTCCTCTCATTTTCTCTAAATGAGATACAATGCCAGCCATCCCAAGCTC--TTGGCCTGAGTTGATCATCTTGAAGTCTAGGACTCCAA-----------GAAGCATGAAA------GAGCTTCTTTAGTGAAGCTATGTC-CTCAGTACTGCCAAAATTCAGACAATCTCCATGGCCTGACAATTTACCTTCTATTT-GGGTAATTTATTGTCCCTTACGCAAACTCTCCAACTGTCATTGCACAGACATATGATCTGTATTTAGCTCTCACTTTAGGTGTTTCCATTGATTCTATTCTCACTAATGTGCTTCAGGTATATCCCTGTCTAGAAGTCAGATTGGGGTTAAAGAGTCTGTCCGTGATTGACTAACAGTCTTAAATACTTGATT----TGTTGTTGTTGTTGTCCTGTTTGTTTAAGAA-------------------------------------------------------------CTTTACTTCTTTATCCAATGAACGGAGTATCTTGTGTCCTGGACCCTTTG-CAAGAACCCTTCCCCTAGCAACAGATGCGTCATCTCAAAATATTTTTCTGATTGGCCAAAGAGTAATTGATTTGCATTTTAAT-GGTCAGACTCTATTACACCCCACATTCTCTTTTCTTTT----ATTCTTGTCTGTTCTGCCTCACTCCCGAGCTCTACTGAC-TCCCAAAAGAGCGCCCAAGAAGAAAATGGCCATAAGTGGAGTCCCTGTGCTAGGATTTTTCATCATAGCTGTGCTGATGAGCGCTCAGGAATCATGGGCTATCAAAGGTAGGTGCTGAGGGAATGAAATCTGGGACGATAGACTACGA-AGCATTGGAGAAAAGACCTATGGACATTTGGAAGATAATGTGTGGAGTGAAAGAATAGTGTGACAGGTATTATGTGGTCTCGA-CAGAAAGTAT-AACAAATTGTGGTTTGGTGGAGTTCTTCCCTCACCACAAACTGAAGTAAGTCAAATTTGGTTTAGAGGGTCAAAACTGAGTTGTGTATTGATGAATAGCAC-GGTCCTGCTACAAGCCAAACtgggggtgggggtgggggtgggggAGGAAGAATATTTTCTGGCAAGCATTAACAAGTTATATTTCTGGGCTTTAATTATTCTTTCTGGAAAATTAGTAAAATTAAAAACTAAAAACCACACATAGTTTTGCTAGAATTAAATGAAAAAAAA-------AGTTATTAGCCCTGTT-CTTATCTGAATACATGATACAGTAGTTATTTTTTGGAGTGTAAATCCTGTCGGTATATATTGAGCACATATATTGTGTTGAAGATTACTAGAAGGAAAAGTCATCAAAAAGCAACAATTTACCCCAGGAAAAGGGGAGGGAAGGCATGCTGATATGAGTTGC--------------CTCATGGGACAGTGATAGCCATTCCCTGCCTTCCCATCTCCATGGTACAGCAGATCTTATATCATGTTAACTTAGTAATATTTCCAAGAGAGTAGAAAAATAAGTAAGGAAATGGGGAATCTGATATTATTGTCTCTCATCTCCAGAGCAACATTGGTGCTGTTGTAAAGATGTACTGTAGAAAAGTATTCTTCACCCAGCGTGACCCCCACAGAAGGTGTCAGGTAGACTTGAAATAAGCAAAGTAATAACCCAGCTCCCATACCCATAGTGGCAATTGTAGATTTCTATTGCCCCAAAAGAGCCATACATAGGGATACTTACCTAGAAAGACAGAGGATCTTCCCTTGGTTTGTGAAGAGGCAGCTAG s canFam2.chr12 5136139 1907 + 75515492 TTTATTCCACCCTATTCATTGATCTAAGTTCCTCAAATGAGGAGTGTCCCCAGCAGTCTACCGCAATGTTTGATCATATTTAAGATGGTAGAGAT-------------------TACAGTCCACTGTTTCTTATAGCCACTATCTATGGTGT--------GTCTACCATCCCTCTCTAGCTAGGGGAATGTTGACACTCAGAGTTTCTCTTCTGATATTCTCTCAATATCGTACAGTGCCAGGGATGCCTAGCTGAGTTGGGCTGAGTTGGCCATCTGGGAGTCTAGAGTACTGAAGGAGAATCCTGAAGCAAAAAGCTCCTGAAGTTACTTAAGTGAAGCTCTGTCACCCACTACTGCCAAGAATCAGGCATTCTCCATAGCATGACAACCTACCTTCTTTCTCAGATGCTTTGTTGTCCCTTAAACAAACTCCCCAGCTGTCACAGCACAGAAGAATAATCTTTCACTAACTGCCATGTAGGGTGTTTCCATTGATTTTATTCTCACTAATGTGCTTCAAGTACATCCCTTTCTAGAACTTGGATTAGG----AAGAAACAGTCTATGGGTGAATGTGATTCTTGAACATTTGTTTATTTTGCTATTTTTATTTGATTATATGTATGAGGTGttttttctttttcttttcttttcttttcttttcttttctttttctttctttttttttttttttttttttttttttttATTAAGAGCTTTACTTGTTTACCTGACCCTTTGACAAGAGCTCTTCCCTTAGCAACAGATGTATCATCTCAAAA-GTTTTTCTGATTGGCTTCAGCTCAACTTATTTAAATTTCAATCAGTCAAACTCTATCATACCATACATTCTCTCTTTTTTTTTAAATCCGTGTCAGTTATACCCTACTCTTTAGCTCTACTGACCTCCCAACAAATCAC---AGAAGAAAATGACCATAAGTGGAGTCCCAGTGCTAGGATTTTTCATCATGGCTTTCCTGATGGGTCCTCAGGAATCATGGGCTGTCAAAGGTAAGTGCTGAGAGAAACAAAACTTGGGATAGAAATTCTGAGAGCATTGGAGAGATAAATTGTAAATATTTGCAAGACTGTCTTTGAAGTGAAGGAAAAGTGTGGCAGGCATCGTGTGGTCTAAATCTGAAAGTATTAAAAAATTGTAGTTTGGAGGAGTTCTGATCTTAT---AAATTGAAGTCAGTCACATTTAGTTGAGAGGAACAAAA----AATG-GTATGGATTAGTACCATTGACTTTGAGATAAGGCTGACTTGAAGTG--------------------AAAATCTTTTCTGAGAGGTATTAACAAGCTAT-Cctctgggctttaatttctttttctggaaaattagtagattttgaaat-------ctcacatcattttgtggggattaaatgagaaaaaatatgagaagttcttgcaactgtttcttagacaaataTATGATA-------TTTTTTTTGGCAAGTGAATCCTGTCAGAATATTTTAAGCACAGATATTGCATTGAAGATCACCAGAAAAGGAAGTTACCAAAA-GCAACAATCTACCCAAGGAAGAGCA-AGGGCAGGTATGCTTATACCAATTGCTCTTAATTTACTTCCTCTTAGGAGAAGGATGGC--------GCCTTCACCACTTCAGTGGATCTATGATCTATGATCACAGCTACTTAGTGATTTTCTCAAAAGAGTAGAACAATGAAAAAAGATATGGAAATTCTTTTATTATTCTCTGCCATCTGCAAAGCAA-ATGTTTACTGCTATGAAGATGTATTGTGAAAAAGTAACCTTTACCCAGACTAAACCCCAGAAAGGATGGCAG-TACGCTGGAAATAAGTAATATAATCATCCAGTTCCAAGACCCATGATAGAAACTGTATGTTTCTATTGCCTTGAAAGGGCCACAAATGGAGATGCATATGTGATAAAATAGAGGCTCTTCCCTTGGGATG-GAAGAGGAAGCTAG a score=6665 s hg19.chr6_ssto_hap7 3756262 171 + 4928567 cttatctcatttaatcttaaaaacaaacccctgacaggatcaaaaccacagcaggactacataataggaaaactatacataaataggtagaataatctgctcaggatcactaggtaagttg----ctgaataagaattcaagatgtttttgatcccagagtttaAAACCCAACCT s canFam2.chr12 5138352 171 + 75515492 cgcctcTCATTTAATTCTAAGGACAAATTCAAGTTAGAAGCAAAACCATAAGAGAAT---ATAATAGGAAAACTGCAAAGAAGTAGATAAAATAATCCATTTAA-ACCACTAGATAAGTAAATACCTGAATAAGAATTAAAGATTTAATTAGATCCAGAGTTCAGAACCTAGACT a score=146079 s hg19.chr6_ssto_hap7 3756433 3192 + 4928567 TTCAAACAGTGTTTCCTTCTTCTTAG-AGTACAATGTTCTGAGAAAGAGATCCTCTGGAATTCTGGCCTAAGTGTATTTAATGCCCGGGTAAAGAAAGTGAGAGAACATTTCTCTTTAGGGGCTGCTGCTGGATTTCTAAAAAGAAAATAATTTCTCAGCTAGTAACATGGAGCCAAACAACAGCTTCACAAGACTCTGGGTTCTTTAGCCCTCATCTCCTTCAATCCACCCTCTTTATAACCAGTCCTTCTTGTTTTTCCCCTCCCAGCTTTGTTCAGCA-GCATGCCCTTCACCCAGACCTTGTCTTGTCACTCATCCCTACTCGCCATCATTCTTTCATTCCTCTTGGCCCAATCTCTCTCCACCACTTCCTGCCTACATGTATGT----------AGGTTAT---TCATTTCCCTCTCTTGATTCCCCCCACCCAACTCTCTTTCTCCATTTCTTGCCTTTCAGAAGAACATGTGATCATCCAGGCCGAGTTCTATCTGAATCCTGACCAATCAGGCGAGTTTATGTTTGACTTTGATGGTGATGAGATTTTCCATGTGGATATGGCAAAGAAGGAGACGGTCTGGCGGCTTGAAGAATTTGGACGATTTGCCAGCTTTGAGGCTCAAGGTGCATTGGCCAACATAGCTGTGGACAAAGCCAACCTGGAAATCATGACAAAGCGCTCCAACTATACTCCGATCACCAATGGTACCTCCCTCTCTGCTGCACTCCTGGACATGGGAATCCATAGTTTGAAAGTAGTTGCTTCAGCTCTTTGTGTTAGATTATTGTAACTGATTTTCCCTCC-AAGGGCCTAACCTTGCCATTAACAAGCCCCAAATTCTCATGCCAGAGGTCTGAGAACTT--TATGGGTTTGATCCTATCTTGTTGTGCTCAAGTCTTGTCTCTGTCATCCATGGTCTCCTACGAAGTCATTGCCCTAAGTTCATGCTAGGG-----GAGCCAGAAGGGAAGT-------------------CCTTGGATATCTTATACCTCAATATTGGCTCAATTTCTTGGGGAGGGGGTGCTGTCAGAGATTGTTATCTGAGGATGTGACATAGATTTCTCAGGGCACAATTTCAACTACTTTTTCAGCTTTAGGGTTTTTAGATACGTTTGTACCACAATTGAGCATGGGAGGGAGAGGGGTGAGCCTAAGCAGTGATGGCTGATTTCTGTCACGTCTGTCATGTGTCCCCCAGTACCTCCAGAGGTAACTGTGCTCACGAACAGCCCTGTGGAACTGAGAGAGCCCAACGTCCTCATCTGTTTCATCGACAAGTTCACCCCACCAGTGGTCAATGTCACGTGGCTTCGAAATGGAAAACCTGTCACCACAGGAGTGTCAGAGACAGTCTTCCTGCCCAGGGAAGACCACCTTTTCCGCAAGTTCCACTATCTCCCCTTCCTGCCCTCAACTGAGGACGTTTACGACTGCAGGGTGGAGCACTGGGGCTTGGATGAGCCTCTTCTCAAGCACTGGGGTATGGACCAACACTCAATCTCCTTTATTTCAAGGTTTCCTCCTATGATGCTTGTG--TGAAACTC---GGTGTT--CTAACTGTTTCATAATATCTGCTACAATTAATATAAC-TGTCTTCTCCTACTATCCAGCTTCCTCCTTTTTTTAATCTGTAATTCTCTCAATACATCATTCTGTCTTCCTCTTCTTTAATCTATGAATAACTTTTCTCTTTATTAAGAACCCTACATTTGATTCTGAGTGTTACTTCTTCCCACACTCATTACC------ATGTACTCTGCCTTATCTCCCCCCAGAGTTTGATGCTCCAAGCCCTCTCCCAGAGACTACAGAGAACGTGGTGTGTGCCCTGGGCCTGACTGTGGGTCTGGTGGGCATCATTATTGGGACCATCTTCATCATCAAGGGAGTGCGCAAAAGCAATGCAGCAGAACGCAGGGGGCCTCTGTAAGGCACATGGAGGTGAGTTAGGTGTGGTCAGAGGAAGACATATATGGAGA------TATCTGAGGGAGGAAAACAGGGTGGGGA-AAGGAAATGTAATGCATTTAAGAGACAA-GGTAGGAACAGATGTGGCTCTTGATTTCTCTTTGCTAGAAT-GAATCAGACATTGGTATCATCTGGTATCCCAAAGCTTCAGGGTCTGTCATCCCTTTCTATAGACGGGCACCTTGATCACGGCTCCAGTCTTAGAAATCATCTCCAGTACCTAAAACCATTGTTTCACATTAGAATACTGAGTCTAGGGATCTAGAAAATACATTAGAATATGGAGTCTAGGGATCTAGAAAATACTGAGTCTAGGGATCTAGAAAAATAAGCCTCAAGATTTGGGCACATCCTAGCTTGTATTTCCTGGGGCAGGTCATCAGTTCAGAAGCATTTCCAGATCCTGGCTCCTTTCAGGTTAGGGTCAATTCATTGCATGAAATGGGAATCTCTTAGAGGCCAATGCCTGCTTTTGCTTCTTTAGTCTCAAATGTAGTATGAGAAACTCTAAAAAAAGGTAAAGCATGG----------TTGCTTA-TTATGTTCAGTTGGAGAGTAGGAACTAACTGTATACAGTTAGTTCATGTTGGAA--------------------AGGTTAGATGAACATTGAAAGAATTTTGCAAAGTCAAAGGA---------------------------------------------TTAAGAGAGAAGAGGAAGGAATCTGAAGCAAGGAGCTCAAAACG--GATCTTAAATTCCTTGGTAACTATGTGTGTCTTGCTATAGGTGATGGTGTTTCTTAGAGAGAAGATCACTGAAGAAACTTCTGCTTTAATGACTTTACAAAGCTGGCAATATTACAATCCTTGACCTCAGTGAAAGCAGTCA-TCTTCAGCGTTTTCCAGCCCTATAGCCACCCCAAGTGTGGTTATGCCTCCTCGATTGCTCCGTACTCTAACATCTAGCTGGCTTCCCTGTCTATTGCCTTTTCCTGTATCTATTTTCCTCTATTTCCT---ATCATTTTATTATCACCATGCAATGCCTCTGGAATAAAACATACAGGAGTCTGTCTCTGCTATGGAATGCCCCATG------------GGGCATCTCTTGTGTACTTATTGTTTAAGGTTTCCTCAAACTGTGA-------TTTTTCTGAACACAATAAACTATTTTGATGATCTTGGGTGGAATTTTTGGTGTTTAAGCCAGTTCTTTGGGTGGCGGTGGGGGGTGGGGAGTCGGTCCTGGGGAATATATGTGATCCTTTCCCGGTAAAATATCTGAATGTTGAATTTATCTTATAAATTCTAGAATTCATCAGA s canFam2.chr12 5138710 3142 + 75515492 TTTAAACAGTGTTTCCCTCTTCTTAATAATCCAGTGCTCTGAGAGAGG----CCCTAGAACTCTTGTTTAATTGTATTTAATGCCTGGGAAAATACAGTGAGTGA---TTCTATTTTAGGAATTGCTGCTAGATTTCCAAAAAGGGAATCATTTCTCAGCTACTAGCATGGAACCTAACAGCAGCTTCACAAGAATCTAGGATTTTCAGCCTTCATTTCCTTCAATGCACCCT-------ACCTCTGCCCTTCATTTCTCCCCTCCTAGTTCTGTTCAACATGGATGTCCTGCACCTGAGCCTCATCTTCCAGCTCATTTCTGCTCTCTATCATTCCTCCATTCCACATGGCC-AATCCCT-TCCACTGCCCAC-ACCCACATGTTTGTCTCACATCCTGGGTTCTACTTCTTCTCCTGCTCCTGGTTTCCACC--CTAACTCTCTTCC-------CTGCCTTTTCAGAGGAGCACGTAATCATCCAGGCTGAGTTCTATCTGACCCCTGACCCATCAGGCGAGTTCATGTTTGACTTCGATGGTGATGAGATTTTCCACGTGGATATGGAAAAGAAGGAGACGGTGTGGCGCCTTGAAGAATTTGGACGTTTTGCCAGCTTTGAGGCCCAGGGTGCCTTGGCCAACATAGCTGTGGACAAAGCTAACCTTGACACAATGATAAAGCGCTCCAACCACACCCCGAACACCAATGGTACGT--------GCTGCACTCCTAGACATGGGGATC-ATAACTTTGAAATAGATGCTTCAGCT-TATGTGTTACATTATTGTGACTGACTTTCCCTCCCAGGGGCCTAGTGTGGCCATAAACAAGTCCCTACTTCTCATGCCACAGGCCCAAGAATTTCATATGAGTTTGTTCCTTTCCTGATGTGCTCATATCTCATCCTTACCATCCACAGTCACTTATAGAGCCATTGCCCCAAATCTATGCTGGGGAGGGTGGGCAGGAATGAAATTATCTCCAGTGCCTAAAATATCCTGTATATCTTACACCACAGCACTGGTTCCAGTTCATGGAGGAGAG----TATCAGAGATAGGTATCTGAGACTGTAGTACAGATC-CTCAGGGCAGAGTTTCAACTGCTTATTCTGTTTCAG---------------------------------TGGGAGGGAGAAGGACTAGCCCAAGCAGGGAAGGCTAATTTCTGTCCTGTGT----------CCTCAGTACCTCCAGAGGTGACTGTGCTCTCAAACACCCCTGTGGAACTGGGAGAGCCCAACATCCTCATCTGTTTCATCGACAAGTTCTCCCCACCAGTGATCAATGTCACGTGGCTTCGAAATGGAAACCCTGTCACCACAGGAGTGTCAGAGACAATCTTTTTGCCCAGAGAAGACCACCTTTTCCGCAAATTCCACTATCTCCCCTTCCTGCCCTCAGCCGAGGACGTTTATGACTGCAAGGTGGAGCACTGGGGTTTGGATGAACCTCTTCTCAAGCACTGGGGTATGGACCATCCTTCCATCTCCTTTCTTTTATGATTTTCCCCGGTGATGCATATGTCTGGTGCTTTGGGATGTTCCCTAACTCATCCATAACAATTGCTATGACTCCTATTCCTTGTCTTCTCCCATTATTCAGTTTCACCCACCTTTTAATATGCATTTCCTTC-ATACATCATTCTGTCTTCCTCTTATTTAATTGATTGATAATTATTTTTTTGACTGAATACCCTACCTTTGATTCTAATTGCTACGCCAT-ACACAGTCATTACCTCTGTACTGTACTCTGTTTTAT-TTTCCCCAGAGTTTGAACCACCAACCCCCCTCCCAGAGACAACAGAGAATGTGGTGTGTGCCCTGGGCCTGATCGTGGGTCTGGTGGGCATCATTACTGGGACCATTTTCATCATCAAGGGCATGCGCAAGGTCAAAGCTGGTGAACGCCGAGGGCCTCTTTGAGGCACTTTCAGGTGGGTTTGATGT----AGAGGAAGGCATATATATAGAAAGAATTATCCAAAAGAAGGAAACAGAGTGGGGAGAAGGATATGTGATATCTTTAAAGGAAAATGATAGGAA-AGTCATGACTCTTAATTTATCTTTGCGAGAACAGAATCAGACATTGACACCATCTGGTATCCCAAAACTTTAAGACCCCATATTCTCTCCGATACATGTGCACCTATACCACAATCTCAGTCTTAGAAATTATCTCCACTACCCAATACTATTGTTTCACATAATACTAATGAATC-AATGATCTAGGA---------------------------------------------------------------------AAGCTTTGAGTACTTTCTGGTATATATTTTCTGAAACAGTACCTCAGCTCAGAAATATTTCCAGAGCTTGGCTCTTTGGGGGTTAGGATAAATTCACTGCAT-AAATAAAAATCTCCTTAAGGCCAATGTCTGTTTTTTCTTCTCCAATCTGAAAAGTGGTGTTGAAACTTCTAAGAAAGCGTAAGCTCTGGAAGCTCTGGTCTGCTCATTTATGTTCACTTGGAGAGTGGGAGATG------------CAATTCATGCTAGAAAGTTTCTATTTACTAGATAGAGGTCAAGTGAATATTTAGAGACACTTCCAAAGTCAAAGGATTTTTCTTTTTCTTTTTTTTCTAAAGGGGTTCCAAAGTCAAAGGTTTAAGGGAGAAGACGAATGAATCTGAAA-AAAGAGCTTAAAATAATAATCTT-AACTCTTTAGTAACTATGCGTGTCCTGCTACAGGCAATGGAGTTTCCTAGAGAGAAGATCAGTGAAGAAATTTATGCTTCAATAGCTTTATAAACCTGGCAATACTCCAACTGTTCACCTCACTGAGGACAACCATTTTTTTGCATTTTCCAGACTTTTAGATATTCTAAGAAAAATGATGTCTTCCTGA-----------TCTGATATCTAGTTA--TTCTCTCTTTGCTGACCCTTCTTGGATCCGTTTTCCTCCATTTTCTACCATCATTTTAATATCACCATGCAATGCCTCTGGAATAGACCCCATAGGATCTTTTCTCTACTACGGAA--CCTTGTGAATGTTCGAAACAGATATCTCTTCTACACTTAGTGCTT-TGGTTTCTTCAAATTGTGATTGTGATTTTTTTTTAACACAATAAACTATTTGATGGATCTGAGATGAAGTTTTT-ATGTCTAAGCCAGTTCTTC---------------ACAGGGA-------CAAAGGAATATATGTGATCCTTTCATTCTGAAATTTGTGAATGTTGAATGTATGTGATAAGTTCTATAAGCAGTCAGA a score=28397 s hg19.chr6_ssto_hap7 3759625 769 + 4928567 CATATCCCGGTTCATTTGGGCTTGGTCTCATTTTGTGCATCTGCAGGCAACCCTCTTGTTGTGGTCTAGTCCTCATCAGGAAAAC-CTAAAGTGGGGTTGGTTTGTTGGGAGATCTCTACTGAGCAATG--------ATATAACTCTG---------------------------------TCTTCAGTAGAGTGAATCTGAAACCCCAAGGTATGGATCTCAG--AATGCATGGGATAGA----GGGGAGCAGATGGGGTTAGAGTGGGGAGAAGGAAGACAGAAGAATCCATAAACATTGCAGGATTTACATATCAACATCGTTCATTCCAGATTTAATGAGCAAAGAGGTTGGACACTGAAGACTGGCCTTACCCATTCTGTTAGACATAGTCTCAGATGCCTATTTTATTACCGAGAGAGTAGTCTGACTGATTCTTGAAACCACCTTATATTTGAAGATGTGTCTTTGAGTGGAAAAGCTGAGTGAAATTTGGGGTTGGGGAGAAAGATATGACATTAAGATGAGAGGAAGGAATATTTGAAACACAATGAACTGTTGCTCATTTGTCTATAAAACTATGACTTGATATTTATCTCTAAAATAGTTTCTAGAACCTGCCATAAACCACTAAGATAAACTATTCATgatagtgtggtagact-gcaaataaatgctgttgaaatgagttaggcttgggtttcatcttggctgtatcatttactagctatgttttcactggtatcttacttaacttagcctc----acattactcatgaaaatactggtgttaatttttactacattgaattaatatca s canFam2.chr12 5142051 802 + 75515492 AATATCCAGGTTCATTATGACCATGTCTCATTCACAGCATCTGCAAGTAATCCAGTTGCTATGGTCCAGTCCCTCTATGGAAAACTCTAGAGTAGAGTTTGTTTGTTGAGAGATCTCTGCTTAGGAATGATTTCAGAATCTAGTTTTGGTTCCTGATTTCCAAGTCAGTGATACATGTGGATCTTTAGTAGAATGAATGTTAAAGCATAGGGTTTAG-CCGCAGCTAATAGGCAAGACTGATGATGGGGAGCAGATGAGAGTGGAGT--------GGAAAACAGAGGAGGATTTACATGTTACAGGATTTACATATCAATG----ACACTCCAGATTTAACGGAAAATAGGATAGGACACTGTGGATCAGCATTACCCATTTTATTA-ACATGGTCTTTGATGCCTGTGTCATTACTAGATAAATGGTCTGACTTATTCCTGAAACAATCTTGTA-TTGGATATGTATCCCCGTGCAGAAAAATCAAGTAAAAAGTGGAAAGTTGGGGGAAAACATGACATTAAAATAGAGTGAAAAAATGTTTGAGATACAGTGAGCTCTTGCTTACTTCTCTGTGAAACTATTACTTGAAATTTATTTCT-AACTAGTTACCAGAGCCTACCCCAAACCATAAAGATCAATTATCC-Tgatagtttgatagagtagcaaataccagatgttgaattgacgtcaacttgggcttcatctt-actctat-atttactagctgtgtattcactgataccttgcttaactcaacttacttgatttgtttcatgaaaatactgatggcaatttttac-acactgagttattataa a score=6504 s hg19.chr6_ssto_hap7 3760394 142 + 4928567 gaattaaaaggaaaacgcaagcaaagtaattagata-catgcttagtgataataaaatattgcaaaaaattatacattctgttg-ttTTTCTCAAAATTTCTATAGACTGATGATAAAAATCTAAGAGAAGCTAAACAAAACAA s canFam2.chr12 5143044 131 + 75515492 GAATTAAAGGACAAATGCAAGAAAAGTAATTATGTCTCATGCTTAGTG----------ATTGCAAAAAATTATAAATTCCATTATTTTTTCTCAAAATGTTTATAACCTGATGATAAAAATCccagaaatgc---acaaatcaa a score=1292 s hg19.chr6_ssto_hap7 3760556 37 + 4928567 ACATTCTAAGCCTTACTAATAAATAAGAAGTTTCTCg s canFam2.chr12 5144099 37 + 75515492 ACCTTAAAGGACTTACTAAAAACTAGCAAGTTTCTGT a score=4918 s hg19.chr6_ssto_hap7 3760889 205 + 4928567 GTTTCTCTACTGTTGGTTCAGAGAATCAAAGCAGAATCTTGAGACTACTGATGGTAGAATAGGTACGAGTGTCTTTCTTACATGACTACAAACTTTATTATAAAATAAATAGCTTAACACAGAGAATACACTAAAACTTAGACAAGCATGGATTAAGAAAGCAAAAAGTAAACCCATATACTACCATGTAAGAAAACCATTTTTg s canFam2.chr12 5144136 183 + 75515492 ATT------CTGT-GGCTTAAAGAATCAAGGCA-CATCTTTAGA-----AATTTGAAAATAGTCATAGGTGTTTCTTTTATGTAACTCCCATTTTT----TACCATAAATAGGTGGCAATAGAGAATACACTAAAACTCAGACATATGTGGCATAAAAAAGAAA-----ACATCTACAACCTCCCATATAAAAAGACATTTTTTG a score=3622 s hg19.chr6_ssto_hap7 3761422 249 + 4928567 aatagacttttattttta--gagctgttttaagctaacagaaaaattg-----------cagaaatt-----gtatacagagctcccccacccc----------cagtttctacaatgcttaacatcctgtattaatgtggtacacttg---ttac--aattgatgaaccaatactaata-attattattaactaaaattcatag-ttatacgagggttcactctgtattacacagttatatgggttctgacaaatacataatatcatatatccaccattacag s canFam2.chr12 5144319 245 + 75515492 AATa---ctttacctttaatgagcagttttaggttcacagaaaaattgggcacaaaatacaagagttcctgaatatccccatctttccccctccctgctccatacagtttctcccattattgacacttggcagcagggtggtacatttgatcttaccacactgatgaatcaacattgatacattattatttacagatgtctatagtttagaatagggttcgttct-----------ttgtatg-------------------------atataaatctctatag a score=42635 s hg19.chr6_ssto_hap7 3761778 1201 + 4928567 tttgcctttttcagaatgtcacatacttgtaatcatacagcatagagctttt---tcagatgagattcttttgcttagccatatgcatacaggtttcctgcgtatattgtcatagcttgatagcttatttttctttaatgttaaataatactccattgtataaatgtactatggtttatttacccattaatctattgaaggacatcttggttgcttctaatttttggcaattatgaataaagctgctataaacatccatgaacagatgtttgtgcaaacacaagttttccact--ttggataaatacatagaagtgcaattgctggatcatatggtaagagtatgtttaactttgttagaaacaactagaata--tcttccaaaatggctgtatcattttgcattcctaccagcaatgaatgagagtccctgtttttctatatc----cttgccagcatttggtattctg-gggtttgggatttaagcaagaaagccatttt--aataTTtttttattttaaaataattatagattcaggggaaattgcaaagacagtatagagacattctgcatacgccttcacccagtttctccaaatgtttatattttaagtaattatagcacagtagcaaaaccaagaaaataccttgatacaatgtgtatgtatagttttatgcatatgtcttatcacatttgtagattcatgtaaccaccaccacaatcaagcacagagctattcca-tatcacagagatcttcatcatgcttccctttatagccaaattccccccacacaatcaccttaacaacttaaaaccactaatttctttgctattaatctctagaatagtgtcattttgaaaatactagttaaatggaatcatgcagtatgtgac----------tggtgtttttcacttagcataatacccatgagatccatccaagctgctgcatatatcaacaatcttttttttttttttattgctaagtagtattccatggtctaaatgcagcacagtttgcttaactatttgcctattgaaggacattttggctgtttctagtttggggtcactataaataaggctgttttgaacatgtgtttaaggtttttctatgagcatgagttcatgagttttcatttctctggtataaatgtc-tgggatataattcatggg-catatgg-aaatatatgtttagtttttcaagaaactg--ccaaact s canFam2.chr12 5144564 1144 + 75515492 tttgccttttccagaatgtcatatagttgaaatcatacagtg-agagctttttagtctaacatgattctttcatgtagcaatatgcatttaaggtcac--catgtcttttcaaagcttaatagc---ttttttcaaattgctgaataatacttcattgtatggacgttccacagtttatcaatcc----acctgtcaaaggacatcttggttgtttccaagtttc-----------acaaagatgctataaacattcctgtgccagtttttgtggggacatatattttcaactcattgagtaaataccaaggaaaac-attgctggactgtaatataggagcatgtttagctttgtaagaaatcaccacagtgtttcttccaaaataattgtaacattttgcattaccatcagcaaggaatgagatgccctattgtactgcattctggcttgctagcatttggtgttgtgagggttcttgattttacccaGAAGTCCACCTTAAAAAATTtttttaatttgaaataattatagattcaccagaacttgcaaagacagtatagatagaccctatgtacgtctt-atctagtttctccaaatgattatatattaaa-aattataataccatatcaaaaccaggaa--------------------acatattggtaaatgtgcctgtttcctcccatgagtacatctgtgtgaccaccaccatagtcaggcacagaactattccattaccagagagttctccctcatgctgccctttgtattcacaatcacttctcttcag-accccatcacctaacaactgctaa----tttgctctccatctctataat-ttgttattttgagaatgtcaaatagatggaatcattgagtatgtggctttctgagcttggcctctttcaattagcataatgccctttagatctatctaagttgttgaatgtacccacaa----tttttcctttttattgctgag-aggcttccatgatatggacaca----------------------cttgttgcagggccttttggttgttcctagtttagggcaacgacatttaaagctgctatgcaaattagtgtacagtttt---------gtgtgaacatgagttttcatttttctgacataaaggccatgaaatgtgactcctgggacaggaggtaagtgtatgtttagttttt-aagagattgccccaaact a score=5856 s hg19.chr6_ssto_hap7 3774394 181 + 4928567 GCTCACCTCGCCTGTGCATGGAGAAGCTCTCAAAAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCAACAGACCCCGCAAGCAGCCCAAGAGGTTCTTCTGGCTGTTTGCATTCCTGGACTCTTCT-----CCGCTCCAGCTCCGCCACCGCCCGGAACTTTCTGACGTCCCTATGGAAGCGCGCAT s canFam2.chr12 5252264 180 + 75515492 GCTCACCTCGCCGCTGCAACGTGTAGAGCTCTTCCACCCCGTAGTTGTGTCTGCACACCGTGTCCACCGTTGCCCGCTCCTGCTCCAAGATCTCCTTCTGCCCGTT------CCAGTACTCAGCCGAGGGCCGCCCGAGCTCCGTGACCGCCCGGAACTCCCCCACGTCGCTGTCGAAGCGCACGA a score=14263 s hg19.chr6_ssto_hap7 3774575 769 + 4928567 ACTCCTTCCGGT-GTGGACGAGTCTCTGCACAAACCGCATCCGCTCTGTCCCATTGCAGAAATAGCACTCGTGTTTAATCTGCTCCAAGAAATGTGCCGCAGGGACATGAAGAACCGGTTTCTTGGGCGGCATCCTAGGAAAAGAGTGATGGCTATGCCCACAATCAGCAGGGCGAGGGGCGGAACACCTTGACTGGCCCCCACCAGCCACCCCCGACCACCTAGGGGTTCCTCTTCCATCTGCCTGAGGCGGA-GGGAGGCTGCGAGGGGCG-TGGAATACCATTT---GGGATCT------GCTACCCATTTCCGAGATGAGCTG----GACGCCTCTTTGCAAGGCTCTGGATCAGAATCACCTTCCTCATCACTGTCTCCTGCGCTTCCTCCTCCTGGGAGCCTCCATCCAAAAGACA--------CTTCT--------------GCTCCCTCCTATCATGCCACACT------------CTACTCATTCCTTAAACAAGA--CCCACTGCCTCCATTCTGT----AAATGCTTCCTTAGTGCTTACCTTgtgtctcatctgtgctgtctcctgggaatcca-aacgggaaaaatagacctcatccctccgctggaggagcttaaagagaagtgaaattgatggcaaaaaaccaaacacgcaacaccttatacaggaacgaaaaatgttaagagaagtgtggagttctagaagaaagaata---ggatgatctaaattacattagggtgccagagaaggactctgagagtgacagctcaaatgtgaccttacaggtttagtgggtgtgagccagggggcagagtg s canFam2.chr12 5160649 769 + 75515492 ACTCCTCCCGGTTATGGATGTGTCTTTCCACGAACCGCACCCGCTCCGTCCCGTTGGTGAAATGGCACTCGGGCTTAAACTGGTACACGAAATGTGCTGTGGGGACGGGGGGATCCGGTCACCAGAG----GCTCCTGGAAGACACCGACGGCGGCACCC---------------CGCGGCGG-----TTCCACCCGCACC--CCAACCACCAGCACCCAC-----GGTTCGTGTTTCCTCCGCTGGCGGGGGAGGGGAGGCGGCCCGGGGGGACGAGACCCCGCTCAGGGGGGCCTTTGGCGGCCACTCGGCTCCCGGCTCGGGTGACCCGACGCCCGCCAGCGCGA---------GCAGCCGCGGCCTTCACCCCT--------CCCCGCCGCCTCCCGGACGCCTCCCCGGGACAGACAgcccctggctcctcgccctcgcccctggctcctccccctcacccctcgcccctcgcccctggctcctcgctcctcgccctcgcctccCGCAGCCCTTTACCTGTCCTCAAACACGTCCCTGCTGCTTCCCCCTGGTTTGGGCTGAGCCG-CCCCTGTGAATCCAGAGAAGGGAAGACACACGTC--CCCTCCGCTCGGGGAGCTCAAAATGGAGGGAAAGTGACGGACCAAACCCAAAGTGGCAAGACTTTGTACAGAGGTGAGGAATGTT---AGAGGGATGAAGTTCTAGAACTGAGAATAGTTGGGTGGTCTGAATTACCT--GGGTGCCAGAGAAGTAGTTCAAGGGTGACG--TGAGATGTGACATGAAGGATGAAGTAGATGC--GCCgagagagagagag a score=15806 s hg19.chr6_ssto_hap7 3775359 532 + 4928567 tctggacaaaaagggaggcacatttcaggt-aagcataatatca-tgtacaaaagcttgaaagaattgatgaacttcttcaagaaaccaga--aaaaagttcactaaagcacag--catgaaggaaaggaggggaaaagattaaactggagaaatcacaagaaggaaacaattaaaatcattgtcatgtta-ggatttcga--tttatactaaatgtaatgggaagcagttgaag--------------agtCCATGACCCCAACAcaggtccacaaacttttttttttggactttctaaatccagaaaactcacgaattcacttgctgttgtttttaa----tttgttgccgaaactcatttggcaaatctgatctgaaGAGGTAAGGACTCAAAAGTGTCA--CAGAGCTCTTACTG----GTGACATGTGCATCTGTAGTTTCAatatatataaacatacaaacatacgtatgcatgtgtaaatatacacagatttcaaatactgtgcatgtatatatTTTTGATGTTTTTGTATTTATGTTTAAATGAACTATGAAAAATA s canFam2.chr12 5161453 530 + 75515492 TTTGGGGACAAAGGGAGGCACCATTCAGGTCAAGGTAAATGTGACTGTGCAAGAGCCTGAAAGAACTGATGAATTTCCTCAAGAACCCAGAGGAAACAGTTGATGGAAACACAGACAGTGAGAGGAAGGAGAGG-GCAGTTTCGACTGGAGTCATCAAATGGAGCCCACAAGAAAAGCCCGTGGGTGGTGACAGCTTTTGACTTTTATACTAAATTCAATGGGATGTGACTGAAGTTTTAACGAGATTAAAACCATGATCGCAATACAGTTCT-CAATCCTTTACCTACG---TTTCCAAATTCAGAAATCTCAGAAAACCA------GATCTTTCTAAGAATTTTGATGCAGAA--CCCGTTGGCAAATCTAATCTGATGAGGTAAGG----------GTCGGTCAGAGCTCTTACTGGTCAGTCACGTGTGCTTCTGTAGTTTCAatatatgtaaacacacacacatcataattcatgtatatatatatgcaaa----------catgtatgtatata-ttttgatatttatgt-TTTACGTTTAATTAAATTAAGACAAGTG a score=15464 s hg19.chr6_ssto_hap7 3776341 414 + 4928567 agaaagcatcttacattatcagtagtataaaatgtagaattactgcagaaatctgaggcattttact-gaaaaatatttgggatagtcgtcaccatttatgacttacaattaccagttgttgaaagttaatagagatagtaattatcaagaacacatcaaaattttgaaataaactgcataacgcaaaaaagtaaaaatgaaaatcttgaacctgcattgactgaatggattcatcaagaaagcagtgaatttatgcaactgtctagttttttttttttttttggtaatgaaacaagcaaaactaagccatgaagagctgaactaagagataaatgtgttttaaaagtgtgagtctagaatttttagaagaaacacA--ATGTAAACCAGTGttctcagccttggcactattgacat s canFam2.chr12 5162058 376 + 75515492 AGAGAGCATCTCACATTATTAATAGAGTAGATTGTAGAATTAGTACAAAAGTTTGACATATTTTACTAAAAAAATATTTG---TGGCAGTCACAATTTATGACT----------------------------GAGATGGGGCTGATCAAGAAATCAT-GAAATACTGAAAAACGTTGCATAAGGCAAAAAATAAAAAACAAAAATCTTG-GCTTGCATTGATTGAATTGGCTCAACAAGAAATTGGTGAATTTACACAATTTTATACTTTATTACTTCT-----GTATTTAAACAAACTAAAATAAACCACAAAGGCCTGAATTGGAAGGTGAATGTGTGTATAAAGTGTGAGTCAAGAATTTTTAGAAGCCCCACAGTATATAAATCAGTGTTTTTGATCTCAGC---ATTAACAT a score=8845 s hg19.chr6_ssto_hap7 3776755 305 + 4928567 tttggactagataatatt----------ttcttggtgagaggagctgtctactagggtccctagcttctacttgttacatgtcagaagaaactcctggtgtgacaaccaaa-aatggctccagacattgccaaatgttccctagggagTTGGGAGAGGGAAGGGAGGGACAGAGGGGTGGTGAACTATCCCTGGGTGAGACCCACTAGTGTAACCATCTGAAAAATCTATGGTTAAAAAGCCGCTATTAATTATGGAATATTTGAGATTTACACTGAAAACTCTGCCAATATTCTATCTATTTAAAATCTTGGTCC s canFam2.chr12 5164119 289 + 75515492 tttggacaagataatgttgggaagcctgttctgtacattgtaggatgtctatcagcatcactagcctctacccactcaatgtcagatgaaacctcagcttaaaaaaccaaacaggggctccagacattgcta--tattctctggggag---------------ggggtaccaa---------aacaattcctgcataagaaccactgTTATA-TTAACTGAAATATATGCGGTGAAAAAACTGATGCTAATTATGGAACAGCTGAGTATTACATTGAAAAATTTGCCAATATCATATCTGATAAAAAGCTTATCCC a score=23392 s hg19.chr6_ssto_hap7 3781294 625 + 4928567 tctaaccttctttctgtctcttcaacacagcacacgccttcccattccttggcctttccccttttctgtctgtctggaacacttgtcccttagat-cttcacatggctgtctt------attgttcttgtctcagctaaatgtgagctctcctcagggagggctcccaaactacctgtgaatccaatgtgaagttgggtgaatccaattctctctgtcctatcaccctgatgtctttttttaaaggcatt-attgctctctgaatttttcttttttgttaaatatttattgggatattgtctgtctcctctggtattgagttcc-----atgagagtagggatcttttttatcctattcaagtagaaatctctcagcctagaacagagaccagaacaaaacttttgctcagaaacatacctgtggtctaaatgaataaaC-CGAAGTTCTGGGAACTGATCACTCTGGGTATTCTAGAAAGCAGAAAAGGGCTC-AAGCTCCTGCACCCTTTCATTCTAATGACATGCTATATCCCTTCTCCTCCCTGTGAGAAATTAAGGCAAACTTCCTTTCTCTCCTCTTTCTAGTTGGAAGAAGGATTCACAGATAAGGAAACAGTGATTGTAAGAAAGAAAAAAA s canFam2.chr12 5165796 598 + 75515492 Tctagccttcct-ctgtcttttaaactcagcaaacatcttcccacactttggcctctgtcctgttctctct--------------tccctcaaattcttcacatggtggacttttcttcatcagtcatgtctcaactaaatgtca--ctttctcagggggagctccctagccacttg------caatgt--agtcaggtgaatccagttctctctatttcacaaacctggtgtgtttttctcagagcactgattgctctctgaaattttttcttct-ttaaatgttttttggg-------ctttctactctgtcagtacactaccacttatgatggtagtgat----tttatcttattcaaatagagttcactgagcctagaacagaacccattacaaaataggtgctcagaaaaatatctgtgatttaaacaaataaaCTCAGTGTTCTGAGAATCAGTCACTGTAAGGATCCTGGGAAGTAAAAAGAGGCTTTAAGCTTCAACACTCCTTTATTTTTATGATATATTATTTCCCTTCTACTTCCTGGGTGAAAATCAAACAAACTTCCTCTCTCTCCTACT----GTTCTAAAAAATA-TCACGGATAAAGAAAAGTTGGCTTTAAGAAAAAAAAAAA a score=6720 s hg19.chr6_ssto_hap7 3786277 141 + 4928567 CAGGGATCTGGGAACTGATCACTGTTTGGATCCTGGAAAGCAAGAAGGGGCTC-AAACTCCAGCACTCTTTCATTTTGATGTCACACTAGACCCCTTCTCCTCCCGGTGTGAAATACAGGCAAAGTTCTTCTTTCTCCTCCT s canFam2.chr12 5166200 142 + 75515492 CAGTGTTCTGAGAATCAGTCACTGTAAGGATCCTGGGAAGTAAAAAGAGGCTTTAAGCTTCAACACTCCTTTATTTTTATGATATATTATTTCCCTTCTACTTCCTGGGTGAAAATCAAACAAACTTCCTCTCTCTCCTACT a score=666 s hg19.chr6_ssto_hap7 3786472 31 + 4928567 tttttaaattaaGA----TTCATCTATTTTTTGCc s canFam2.chr12 5166602 35 + 75515492 TTTTTAAAAAAGGAAAATTTCATTAGGTTTCAGCT a score=79050 s hg19.chr6_ssto_hap7 3786795 2066 + 4928567 TCTCTTTCAATGGATCTCATAGTGCTCTGGGTCTGTGCAAGCTTTAGGAATTTCTGGAAATGATGACAACATAGCTGGGGAAAAATAA----AAACTGGAGGAAGAGGTAAGCAGACATGGCTAATTAAGGAAAGCTGAGGGCATGACGGGTGAACCTAGGAAATTTAAGAC-AAGACCCCAGTAAGACAATGAGTTCCCAGGACTTGCTCATTGACTTTCAGCCCTATGAGATGTGAACAATGTCCGCATTGTCTCTGTAACCT-CACACAGTATAtagtttgaacattattaaatttctgatatttgactgtttttgacttacaaaaatagaatttcatataatttatcttaCGTTAGTTGAATATCTTCTTGTTATGTCTAGTTAGAGCATGTAGGACATGTAGGAGAAATT---TCTATAGAAAGGTTAGAAG-AGATTCATAATAAACACTAAGCCGGGCCAGGTTTTCCGAGGATGCCTTAAGTTCTTTAGG-CACCAAAGAACACCCCAGAGATGCTCTTTATCTGTAGGGTGACTCCAAGTACTAAAGATCTTAGCTTCAGTTCCAGGGATTTTTCCCCATAAGAAAGACAGA---GCACTAAGTATAACTTCTGTCAGAGAACCTACA-TACACTACAGGGATATAGGCTTTATAAACATTGGAGTTCAGAAAGAAAAAGAAAGGAGATAATGGGG--AGGCCATTGGTACATCCTCACATTTGAGGAAGAGGGGCCAACACCAAAGTTCCTGTGGAGGACATAACCCAGGATCCTCTAGAAGAGACCCTTTGAATTATCTTG-ACTC-CCACAAAATTTTCAGTAAAAACGTCATTTTGTCTGACGTAAGTCAACATAATAAAGGGAAGTGCTGTATGGGGAAATTATTTTAGCATCCTTATTGCCAAATCCTCTAAACACCCTGAGGACATGTGATGCAA--------AGGTTTTATTGGTGGAGATTTAAAAAGAAATGATCTGTACG-----AAGGCCCCTTACACAG-TCTTATGGACTGTGTCATGAGCAAGTAGTCAAGCTCCTTTCGTGGAGGAGATAATTTGGGATCCA---ATAATACAGATGCACAATCTCTGACCAAAACGTCACAAAGTCTTAAGGGACATGGCCTGGGCACAATGTTAACA--AAACTCTCTATTTTCCCCACCCCATAGTAGCTCAGCACCCACAATGTGCGCTTATGTCGGGTGTCCCCAGCCAAAGCCAGTGGGAAGCTCAGCACCATCAGTGTCACTGTCAGCGCTGCCATGCAGGAGCCTTCAGGGAGCTTCAGACACACCATGCTGGAGAACAGGAAAGGACCAGGGGCCAGAGGAGGAGGCAAGTCTTACTCAGGAAGAACTATGAACCC-CTCCACCCACATTCCAAATTATGGGGTTGGAAGTTACTGACTTTCTTGCTCCTGGGTCGGGTAATCTCGTGTTGGAGAACCAATCAGCATCTGAGTTCAATAGCATCATCAGTTGCTGGTCAGAGATGCTGTATGAAGGTCCTCTTCTGAAAC--AGAATTTCCTTCTTTAAAGGATTGTTTTTAAATTAGTGCTTGAAAGATTTGATCCAGTTGCATGTAAAACACTTTAATTGGGTCCGATTGTGAGCCAGCTCTGTGCTGGTCAGTGATGTGTTCGTAAGTTTGAGCCTTGTAAGAGCATTCATTTCCCACTTGACAAGACAACTGTTTGCAGAAGTGAG-TGTGTGA-GTGTGTTTAGGAGTAAAGGAGATGGAAGGAACATGGTTGTAAATCCGGAGACATTTAAACTGGTCCTTATTGCACCATATCTTAATGTTGTAGATTTGGGAAAATTATTTCGTGTCTCACAGTTGAAATGAAGGCACTGTGATCTTTCAGGTCTTTCGATACTGGAAAATGCTGTGATTCTGTGGACGCCTGAAGGAGCAGCAGCCCCGGGTATCTGATAATATGACAGAATGACAGCTATTGACTAGAGAGCTTAATCCGTACCTGTTTACAGGTAGGGATGTCTTTAATAAGTTAAAGGAAATTGAAAGTTTGTTAATAATTTAATCTGAGTAAGAATATCTTTTTCAAGTGTGTCTCCTGATG s canFam2.chr12 5166637 2042 + 75515492 CATCCT-----GTTTGTGATAATGCTGAAGGTCTGTGCGAACACTGGGCATTCTCAGTAATGGTGATGACAGAGTTAGGAAAGAATAGTGACAAACTGGAAGTGGAAGCAACCAAATACGGCTATTTAAGGAAAAA-GAAAACATGATGAATGAATCTATGCAATTTGAGACCAAGACCTCAGTAAGGTAGTAAGTTC--AGTTTTTGCTC-TTGGCTTTCAGTCCTATAAAATGTAAATAAC--CTTCACTCTTTCTGTACCTTGCTCAGGGTTTGCAGTTCGAATAC-ATGAAATTCCTGATATTTGACTAATTTTGGCTTTCAAAAACATAATTTCATATAATTTCTCCAATACTAGTTGAACCCCTTCCTGTGGGCTCAGGGCAAAATG---GGAATATGCAGGAGAAAGTGACTCTATAGAAAGGTTCGAAATAGATTCATAATGAAAATTAACCTGTGCCAAGTTCTTGGAAGAGATATTAAGTTCTTTAAGACACCAAAGAACACCCAATATGTGCTTCTTATTTACTGTATTATTTCAAGTACTAAAGATCACTGCTGTAGCTCCAGGG-----------TGAGATATAGAGATAAAAATTAACCCCAACTTTTTTCAGAGAACCTCCAGTATA------GGATAAAGGCCTTATAAACTTTGGGGCTCAGGAG--AAAGGAAAGGAGATCATGGGAGAAACCTCTTGATACATTCTCACATATTAGAAAGAGACACCAACATAACTGATCCAATGAAG-ACATAAAACAGGGTCTTCTCAGAGAGAACTTTCTAATTCTTTTTCATTCACCATAAAATTTTCAGAGAAGCTTTCCTACTTTCTAGCATAACTCAACATAATAAAGGGAACTACTTGATGGG--AATTAATTTGGAGTCATTATTTCTAAGTCTTCTCAAGACCCTGATGGAATGAGATGCAAGCCTGAAAAGCTTTTATTGGAGGAGAGTTGAGAAGAAATGGCCTATATATATGAAAGACCCCTTAAGCAACTCTTGTAGA---------GGGCAAGCCGGTGAACTCCTTTTGTTCTCAATAGAATTGGGGGTCTATATATAATAAAAATTGGTGGTTATTGAAGAAAATATCACAATTTTCTAAGGGACATAGCCTGGACACAGTGGCAAAACTAATTTCTTTCTTCCCTCCAACCCATAATATCTTACCACCCAAAGTGTGCACTTACGTGGGGTGTCCCTGGCCCAAGCCAAGGGAGGGTTCAGCACCATCAGTATCAGCATCAGAGCTGTCATCCAGGAGCCTCCAAGAAAACACAGACACACCATGCTGGAAAACAGAAAGGA--CAGGGTGCAGGGGAGCAGTCAGGTGTCACTCAGTGAAGACTGGGACCCTACTTTGGCCACATCCTAAATAACACTAACCAAAG-AATTCATTTCATTGTCCCTGGATTGGGTAATCTTGGTGATAAGAACCAATCAGCAACAGCAATATATTGCATCATCAGTTGCTGGTCAGAGATTCAGTATGAAGAGCCTCTTCTGAAACTTTGATTTTGTTCATTGAAAGGATTG-TTTTAACTTAATACTTTAAAGATTTGATCCAGGTGTATATGAAACATTTTATTGGACCCCTATTGTGAGCCAGTTCTGTGCTGGGCAGTGATGTGCACGAAAGTTCGAGCCTTCTAAGAGTATTCATGTCTCTCTTGAAGACAGAATTGTTT-------TGATCCATGTAATGTGTTTTTaggagctgaggacatggagag----tgattgcaagtcaagaaccctttgctctggaccttgctgcaccatcacttagtgttgtagatttgaggaaaatattta--acctTAACCTTGAAATGAAGGCACTGCAATCTTTCTGGTACTTCGATA-TGGAAAGTGATGTGATTCTCTGGACAGCCCAAGGAGCAGCATCTCCTGGTAACTGATGATATAAAAGAATTATGGCTATTGATTGGAGAGTATAGTAT-TACCTCCTTATATGTAGGGAAGTCTCTGGTAAAGCTAAAGGAATTGAAATTCAGTCATTAAATTAACCTGAGTTAAAAGGTC--CTTCAAGTTTATTTCCTGATA a score=7574 s hg19.chr6_ssto_hap7 3788861 203 + 4928567 CTGCCCCCAGGTTTAGTGGCCCCTCCAGAACACACACAGGCAAGGGGCT---AACAGGGGCCACCTATGTGCAATGGAGGGTC-TGAAGGTGCCTTTGTATGGCACTTACCCTAACAATGTGATAAGGTCAACTGTGC-AATCCAAGTATTCATGGGTCTGAGAGATCGATCGAAGACTGTGAAAGTTAGCTGTTCATAGAACAACTC s canFam2.chr12 5169273 202 + 75515492 CTATCATTGAGTTTGGAGGCATCTCCAGAATATGCATAAGGAAAGGGCTTAGAACATG----ATCTATGTGGAATAGAGGGTCTTGAAAGTTCCTTCATATAGCACTTAACCTAACAAAGTGATAAGGCCAACTGCCCAAATCTACACTTACAGGGAGCTAAGAGATTGATAAAGGAC--TCAAAGTCAGCTTCTAGCGTAACAGCTC a score=13828 s hg19.chr6_ssto_hap7 3789359 311 + 4928567 TGTTTTAAAATAATGAATATTTTATGTG--AAGAGTGTTCAATCCCTCATTCTTGGTTCCCATTATGATTTCCTCATTTGATTGAGGCTATAGCACTTTATATTATG---TTTCTCTTGTTTTATCATAAGGGAAGATAAAAGACGACTTTGCTAACTAATACATTTCAGAATATTCAGGAAAGAGAACACTAGGGAAA-ACTATGAATTACATCAGTTGATGTAACTATGTAATATTAAACATATTATTATACATTTAGATAATGACTATGCtttttattaatataaatataaCATCTAAGATTCAGAATGGACTT s canFam2.chr12 5169475 311 + 75515492 TGCTTTCGGATAATTAATA-TATATGTGGCAAATATGTTCAATCCAT-ACTCCTGGATCCCATTCTGTTTTCCTCATTTTACTGGATATATG----TTTTTAGTGTGCATCTTCTCTTGCTTTGTTTTAAGGAGACATATAAGAAGCTGGTGCTAATGAATACATTATAGAATGTTCAGGAAATAGAACACAATGGAAATATTATGAATTATATCCTTTGATATAACCATATAATTTTAAACATATATTTCCACTTTTAGaaaattattatacattatattaatataaatGTAATATCTCAGATTCAGAATGGACTT a score=2820 s hg19.chr6_ssto_hap7 3789670 51 + 4928567 CAGAAT------------ACAACTATGCTTATAAAGTTCTGCATTAATTCACATGCTACCACA s canFam2.chr12 5169983 63 + 75515492 CAGAATGGACTTTAAAGGACAACTATCTATCTAAACTTCTGCATTAATTCACATTCTACCACA a score=11961 s hg19.chr6_ssto_hap7 3798085 335 + 4928567 aatgactctctgaaattttcttctttgttaaatgattattgggttattgtctatctcctctatgattgtgtaatttcc-atga--gtaggggcCAATCCACTGTATCTTACTCAAATAGAATGATTTGAACCTAGAAGGGAGGCCAGTACACAGTAGCTGCTGATAAAAATAAGTGTGGTTTATATGAATAAAC-CAGGGTTCTGGGAACTGATCACTGTTTGGATCCTGAAAAGCAAGAAGGGGCTC-AAGCTCCAGCACTCTTTCATTTTGATGTCATACTAGACCCCTTCTCTTCCCTGTGAGAAATACAGGCACACTACTTCTTTCTCCTCCTTCT s canFam2.chr12 5166021 324 + 75515492 gattgctctctgaaatttt-ttcttctttaaatgttttttggg-------ctttctactctgtcagtacactaccacttatgatggtagtg--------attttatcttattcaaatagagttcactgagcctagaacagaacccattacaaaataggtgctcagaaaaatatctgtgatttaaacaaataaaCTCAGTGTTCTGAGAATCAGTCACTGTAAGGATCCTGGGAAGTAAAAAGAGGCTTTAAGCTTCAACACTCCTTTATTTTTATGATATATTATTTCCCTTCTACTTCCTGGGTGAAAATCAAACAAACTTCCTCTCTCTCCTACTGTT a score=875 s hg19.chr6_ssto_hap7 3798798 20 + 4928567 TTAAGATTCATCTCTTTCCg s canFam2.chr12 5166624 20 + 75515492 TTAGGTTTCAGCTCATCCTG a score=8436 s hg19.chr6_ssto_hap7 3799103 258 + 4928567 TTATCTCTTGTGATGAACCTCATAGTGCTCTAGGTCTGTGCAAGATTTAAGGATTTTGGGAAATAATGACAACATAGCTGGGGAAAAATAGAGAGAAACTGGAGGAAGAGGTAAGCGGACATGGCTAATTAAGAAAAGCGGAGGGTATGATGGGTGAACCTATAAAATTTAGGAC-AAGACCCAAGTAGGACAATGAGTTTCCAAGACTTGCTCATTGACTTTCAGCCCTATGAGATGTGAACAATGTCCACATTGTCT s canFam2.chr12 5166644 240 + 75515492 TT------TGTGATAA---------TGCTGAAGGTCTGTGCGAACACTGGGCATTCTCAGTAATGGTGATGACAGAGTTAGGAAAGAATAGTGACAAACTGGAAGTGGAAGCAACCAAATACGGCTATTTAAGGAAAA-AGAAAACATGATGAATGAATCTATGCAATTTGAGACCAAGACCTCAGTAAGGTAGTAAGTT--CAGTTTTTGCTC-TTGGCTTTCAGTCCTATAAAATGTAAATAACCTTCACTCTTTCT a score=14719 s hg19.chr6_ssto_hap7 3799371 407 + 4928567 ACTCAGAGTATAtagtttgaaccttagcaaatttctgatatttcactatttttgacttacaaaaatataatttcatataatttatcctaCATTCATTGAATCTCTTCTTGTGGAGTCTAGTTAGAGCATATAGGAG-ATGTAGGAGAAGCTAG---TATAGAAAGGTT-AAAAGAGATTCATAATAAACACTATCCTGGGCCAGGTTTTCAGAGGATGCCTTAAGTTCTTTAGG-CACCAAAGAACACCCCACAGATGTTCTCTGTCTGTAGGGTGATACCAAGTACTAAAGATCTCGGCTTCAGCTCCAGGGATTTTTCCCCATAAGAAAGAAAGA---GCACTAAGTATAACTTTTGTCAGAGAACCT---ATGTAAGCTACAGGGATACAGGCTTTATAAAGACTGGACTTCAGAA s canFam2.chr12 5166891 395 + 75515492 GCTCAGGGTTTGCAGTTCGAATACATG-AAATTCCTGATATTTGACTAATTTTGGCTTTCAAAAACATAATTTCATATAATTTCTCCAATACTAGTTGAACCCCTTCCTGTGGGCTCAGGGCAAA----ATGGGAATATGCAGGAGAAAGTGACTCTATAGAAAGGTTCGAAATAGATTCATAATGAAAATTAACCTGTGCCAAGTTCTTGGAAGAGATATTAAGTTCTTTAAGACACCAAAGAACACCCAATATGTGCTTCTTATTTACTGTATTATTTCAAGTACTAAAGATCACTGCTGTAGCTCCAGGG-----------TGAGATATAGAGATAAAAATTAACCCCAACTTTTTTCAGAGAACCTCCAGTATA--------GGATAAAGGCCTTATAAACTTTGGGGCTCAGGA a score=56647 s hg19.chr6_ssto_hap7 3799779 1392 + 4928567 GAAAAGAAAGTAGATAATGGG-GAGGCCACTGGGTACATCTTCACATATGAGGAAGAGGGGCCAATACCACATGTCCTGTGGAGGACATAACACAGGATCATCTAGGAGAGACCCTTTGAATTCCCTTG-ACTC-TCACAAAATTTTGAGAAAAAAACCTCCTTTTGTCTGACTTAAGTCAACATAATAAAGGGAAGTGCTGTATGGGGAATTTATTTTAGCATCCTT-TTTCTAAATCCTCTAAAGACCCTGAGGACATGTGATGCAAAG---------TTTTATTGGTAGAGATTTGAGAAGAAATGACCTGTATG-----GAGGCCCCTTACACAAGTCTCATGGAGAGGGCAAGTAGCCAAGCTCCTTTTGTGGAGGAAGTAATTTGGGATCCATGTG--ATAAAGATGGGCAATCCCTGTTGAAAACACCACAAATTCTTAAGGGACATGGCCTGGGCACAGTGACAAATTTAGGTCCCTACTTTAACCCC-CTTATAGTAGCTCAGCAACCACAGGGTGCACTTAGGTCCGGTGTCCCCAGCCAAAGCCAGTGGGGAGCTCAGCACCATCAGTGTCACTGTCAGCGCTGCCATGCAGGAGCCTCCAGGGAGCCTCAGACACACCATGCTGGAGAACAGGACAGGACCAGGTGCCAGGGTAGCAGGCAAGTCTCACATTCACGGAGAACTATGACCTCCCTCTACTCACATCCCCAAC-ACAGGGAGTAAGGTACTAATTTCTTTGCTCCTGGGTTGGGTAATCTCGTGTTGGAGAACCAATCAGCATCTGAGTTCAATAGCATCATCAGTTGCTGCTCAGAGATGCAGTATGAAGGTCAGCTTCTGAAAC----AATTTCCTCCTTTAAATGATTGTTTTAATTTAGTACTTGGAAGGTTTGATCCAGTTGCATGTAGAACACTTTAACTGGGTCCTTATTGTGAGCCAGCTCTGTGCTGGTCAGTGATGTGTTCACAAGTTTGAGACTTGTAAGAGCATTCATTTCCCACTTGACAAGACAACTGTTTGCAGAAGTGAG-TGTGTGA-GTGTGTTTAGGAGTAAAGGAGATGgagggaacatggttgtaaatctggagacctgtaatctagtccttattgcaccatatcttaatgtcatagatttgggaaaattacttcatgtctcacagttgaaatgaaggcactgcgatctttcaggtctttcaatactggaaaatgctgtgattctgtgGACGCCTCAAGTAGCAACAGCCCCTGGGTATCTGATGATAGGACAGAATGACAGCTGTTAACTGGAGAGGGTATTCTGTACCTATTTCCAGGTAGGGATGTCTTTAATAAGTTAAAGGAAATGGAAAGTTTGTTAATAATTTAATCTGAGATTAAATTGTTTTCAAGTGTGTCTCCTGATG s canFam2.chr12 5167286 1393 + 75515492 GAAAGGAAAGGAGATCATGGGAGAAACCTCTTGATACATTCTCACATATTAGAAAGAGACACCAACATAACTGATCCAATGAAG-ACATAAAACAGGGTCTTCTCAGAGAGAACTTTCTAATTCTTTTTCATTCACCATAAAATTTTCAGAGAAGC-TTTCCTACTTTCTAGCATAACTCAACATAATAAAGGGAACTACTTGATGGGAA--TTAATTTGGAGTCATTATTTCTAAGTCTTCTCAAGACCCTGATGGAATGAGATGCAAGCCTGAAAAGCTTTTATTGGAGGAGAGTTGAGAAGAAATGGCCTATATATATGAAAGACCCCTTAAGCAA--CTCTTGTAGAGGGCAAGCCGGTGAACTCCTTTTGTTCTCAATAGAATTGGGGGTCTATATATAATAAAAATTGGTGGTTATTGAAGAAAATATCACAATTTTCTAAGGGACATAGCCTGGACACAGTGGCAAAACTAATTTCTTTCTTCCCTCCAACCCATAATATCTTACCACCCAAAGTGTGCACTTACGTGGGGTGTCCCTGGCCCAAGCCAAGGGAGGGTTCAGCACCATCAGTATCAGCATCAGAGCTGTCATCCAGGAGCCTCCAAGAAAACACAGACACACCATGCTGGAAAACAGAA-AGGACAGGGTG-CAGGGGAGCAGTCAGGTGTCAC--TCAGTGAAGACTGGGACCCTACTTTGGCCACATCCTAAATAACACTAACCAAAGAATTCATTTCATTGTCCCTGGATTGGGTAATCTTGGTGATAAGAACCAATCAGCAACAGCAATATATTGCATCATCAGTTGCTGGTCAGAGATTCAGTATGAAGAGCCTCTTCTGAAACTTTGATTTTGTTCATTGAAAGGATTGTTTTAACTTAATACTTTAAAGATTTGATCCAGGTGTATATGAAACATTTT-ATTGGACCCCTATTGTGAGCCAGTTCTGTGCTGGGCAGTGATGTGCACGAAAGTTCGAGCCTTCTAAGAGTATTCATGTCTCTCTTGAAGACAGAATTGTTT-------TGATCCATGTAATGTGTTTTTaggagctgaggacatggagag----tgattgcaagtcaagaaccctttgctctggaccttgctgcaccatcacttagtgttgtagatttgaggaaaatatttaa--cctTAACCTTGAAATGAAGGCACTGCAATCTTTCTGGTACTTCGATA-TGGAAAGTGATGTGATTCTCTGGACAGCCCAAGGAGCAGCATCTCCT-GGTAACTGATGATATAAAAGAATTATGGCTATTGATTGGAGAGTATAGTAT-TACCTCCTTATATGTAGGGAAGTCTCTGGTAAAGCTAAAGGAATTGAAATTCAGTCATTAAATTAACCTGAGTTAAAAGGTCCTTCAAGTTTATTTCCTGATA a score=23834 s hg19.chr6_ssto_hap7 3801171 501 + 4928567 CTGCCCCCAAGTTTagtggcacctccagaacacacac-aggaaggggcttgcagggaccacctatgtgcaatggagggtc-tgaaggtgcctttgtatagcacttaccctaacaatgtgataaggtcaactgtgc-aatcgaagtattcaggggtctgagagattGATCAAGGACTCAAAGTCAGCTGTTGACAGAACAACACTGCTGTAAAATAATTAATATTTTATGTG--AAGAGTGTTCAATCCCTCATTCCTGGTTCCCATTAGGATTTCCTCATTTGATTGAGGTTATGGCCCTTTACTATTATGCTTCTTTTGATTTATCATAAGGGAAGATATAAGAAGACTGTGCTAACTAATACGTTACAGAATGTTCAGGAAAGAGAACCCTAGGGAAAAACTATGAATTACATCAGCTGATGTAATCATGTAATTTTAAACATATAATTCTACATTTAGATAATTATTATGCTTTATACTAATATAAATGTGACATCTAAGATT s canFam2.chr12 5169273 501 + 75515492 CTATCATTGAGTTTGGAGGCATCTCCAGAATATGCATAAGGAAAGGGCTTAGA-ACATGATCTATGTGGAATAGAGGGTCTTGAAAGTTCCTTCATATAGCACTTAACCTAACAAAGTGATAAGGCCAACTGCCCAAATCTACACTTACAGGGAGCTAAGAGATTGATAAAGGACTCAAAGTCAGCTTCTAGCGTAACAGCTCTGCTTTCGGATAATTAATA-TATATGTGGCAAATATGTTCAATCCAT-ACTCCTGGATCCCATTCTGTTTTCCTCATTTTACTGGATATATG--TTTTTAGTGTGCATCTTCTCTTGCTTTGTTTTAAGGAGACATATAAGAAGCTGGTGCTAATGAATACATTATAGAATGTTCAGGAAATAGAACACAATGGAAATATTATGAATTATATCCTTTGATATAACCATATAATTTTAAACATATATTTCCACTTTTAGaaaattattatacattatattaatataaatGTAATATCTCAGATT a score=9973 s hg19.chr6_ssto_hap7 3801672 266 + 4928567 CAGAATGGACTTCAAAGTACGGCTATACATATAAAGCTCTGCATTAATTCACACTGTACCACAGTTCTGATAGGCACTCCTTCCTTATGTGCCTTAGTGTTTCCAGGAGCAGGATTCTCACCATGCTGCGATAA---------------------AAA---tgagcatttgactttgtactcagaattgtactaaaaactttctatgcttcatatttttatttaattctcacatcagctcagtaaaataaacaccgttttcatgcttacaggtggagagactaaaatgat s canFam2.chr12 5169983 275 + 75515492 CAGAATGGACTTTAAAGGACAACTATCTATCTAAACTTCTGCATTAATTCACATTCTACCACAG-TCTGATAAACAGTCCTT-----TATGGACTAGTG---ACAAACTATGGAT----ACCATGTTGCAATAACATGACTAATATTTACTAAGCAAATTttgagcattttgctttgcacccag-attataa-aagggctatttatacatcatatttatatttaattctcacatcacctcagtgatttgagtaccctttgcatccttatggatggaaagaataaaatgat a score=3315 s hg19.chr6_ssto_hap7 3801943 98 + 4928567 taaaacaaattttgccaagataca---ctagtaaacggtaCACTATAGATTGAGCCAAATTATAT----------ACCTCTCAAGCTCAGTCATTAGATCATACTCCTTCA s canFam2.chr12 5170466 111 + 75515492 taaaaaagctttggcaaggacacaaggcaagtaaatggtgtattccagattgagccaagttatatgtgagtctaaatcccacacgtccaaccattacaccTTACCATCTCA a score=7328 s hg19.chr6_ssto_hap7 3808073 190 + 4928567 ACTTGTTCCCATGATTTTATTATCTCCATGAAATGCTTCTGGAATATACCACATAGAATTCTTTCTCTACTGTGCAATTTTCTGAACATTCTATGGGGACGTTTTTCATTTACTTATTGCTTCAAGTTTCTTCAAATAGTAA--------TTCTTCCGAAATACTATACTATTTTGATGGTTCCTGGATGAATTTTCT s canFam2.chr12 5141552 196 + 75515492 ATTTTCTACCATCATTTTAATATCACCATGCAATGCCTCTGGAATAGACCCCATAGGATCTTTTCTCTACTACGGAACCTTGTGAATGTTCGAAACAGATATCTCTTCTACACTTAGTGCTTT-GGTTTCTTCAAATTGTGATTGTGATTTTTTTTTAACACAATAAACTA-TTTGATGGATCTGAGATGAAGTTTTT a score=3535 s hg19.chr6_ssto_hap7 3808296 69 + 4928567 CTAGAGGATTTATGTGATCCCTTCATCCTGAATTGTCTGAATGTCGAATGTATCATATAAGCTCTGGAA s canFam2.chr12 5141774 69 + 75515492 CAAAGGAATATATGTGATCCTTTCATTCTGAAATTTGTGAATGTTGAATGTATGTGATAAGTTCTATAA a score=26939 s hg19.chr6_ssto_hap7 3809091 746 + 4928567 AGAAATATCCAGGCTCATTGGGTT--GGTCTCTTTCTGAGCATGTGCAGGCAATTCTATTGCTGTGGTCTAGTCCTCAGCAGGACAACGCTAAAGTAGGGTTTGTTTGTTGGGAGATCTCTGCTGGGCGATTGGTTCAGCAACAGTTTTTGGTTCTTGAGCCTGCAGGTCAATGACATGTCTGTATCTTCAGTAGAGTGAATCTGAAACCCCGGGATTTGGCCTCTGAGAATGGGTGAGACAGATGGAGAGGAGGAGATAGAGGGTAGACTGGAGCAGAATGAGAAGAAGACCCACAAATATTACAAGATTTACATATCAGCATTGCTCATTCTAGACTTCAAGAGGAATGAGATTAGACACTGCAGATTGACATTGCCTGTTCCTTTAGAAAAAGCCTTGGATGCCTGTTTTATTACCAGGAGAACAGTCTGACTTATTACTGAAACCATTATATATTTGGACATGTGTATTTGGGTGGAAAAACTGAGTAA-----TGGGAGCAGTGGCAGGACACGTCATTAAGGTGAG--AAGAAAATATTAGAAAAACAGTGAGCTATTGCTCATTTGTCTATAAAAGTATGA--TGATACTTATTTCTAAAATGGTTACTAGAACCTACCACAAACCATAAAGGTGAATTATCAATGACAGTGTGATAGACT-GCAAAT---AAATATTGagtta-----gatttggatttcatctgggctgtatcatgtactaggtatgttttcacttgtatcctacttatcttagcct s canFam2.chr12 5142048 748 + 75515492 AGGAATATCCAGGTTCATTATGACCATGTCTCATTCACAGCATCTGCAAGTAATCCAGTTGCTATGGTCCAGTCCCTCTATGGAAAACTCTAGAGTAGAGTTTGTTTGTTGAGAGATCTCTGCTTAGGAATGATTTCAGAATCTAGTTTTGGTTCCTGA-TTTCCAAGTCAGTGATACATGTGGATCTTTAGTAGAATGAATGTTAAAGCATAGGGTTTAGCCGCAGCTAATAGGCAAGACTGATGATGGGGAGCAGAT-GAGAGTGGAGTGGA----AAACAGAGGAGGATTTAC--ATGTTACAGGATTTACATATCAATG----ACACTCCAGATTTAACGGAAAATAGGATAGGACACTGTGGATCAGCATTACCCATTTTATTA-ACATGGTCTTTGATGCCTGTGTCATTACTAGATAAATGGTCTGACTTATTCCTGAAACAATCTTGTA-TTGGATATGTATCCCCGTGCAGAAAAATCAAGTAAAAAGTGGAAAGTTGGGGGAAAACATGACATTAAAATAGAGTGAAAAAATGTTTGAGATACAGTGAGCTCTTGCTTACTTCTCTGTGAAACTATTACTTGAAATTTATTTCT-AACTAGTTACCAGAGCCTACCCCAAACCATAAAGATCAATTATC-CTgatagtttgatagagtagcaaataccagatgttgaattgacgtcaacttgggcttcatct-tactctat-atttactagctgtgtattcactgataccttgcttaactcaactt a score=663 s hg19.chr6_ssto_hap7 3810019 18 + 4928567 CACACACCAAGGAGGCAC s canFam2.chr12 5143165 18 + 75515492 cacaaatcaaaagatcac a score=12019 s hg19.chr6_ssto_hap7 3810038 446 + 4928567 ACCTTGTAACACTTACTAATAAATAACAAGTTTCTCTA-CCTATGGTTTATAGAATCCAAGCAGAATTTTGAGAATATTACAGATAG-AATAGGCGTACATATTTTGTAACATATCTATAATTTCAATATAAGATAAGTAGATGAGCAATATAGAATGCAGT-AAATGCAGACAAATATGGAATAAAAAAGCAAAAATAAATCCATATCATTCCACGTAACAAAACCattttttaa----------------agtagttttaggtgtaaagaaaaattgtggagaaatttcaggtagttcccacat---cccttctttcctaaaacagccctctgct-----cagtttctcctattactaacatcctgcatcagtgtggtacacttg---ttac--aaatgatgaaccaatactgatac-tta-cgttaactgaggtccatagttga-attagggttcattc-----atattatacagttctatgg s canFam2.chr12 5144099 465 + 75515492 ACCTTAAAGGACTTACTAAAAACTAGCAAGTTTCTGTATTCTGTGGCTTAAAGAATCAAGGCACATCTTTAGAAAT-TTGAAAATAGTCATAGGTGTTTCTTTTATGTAA-----CTCCCATTT---TTTACCATAAATAGGTG-GCAATAGAGAATACACTAAAACTCAGACATATGTGGCATAAAAAAGAAA----ACATCTACAACCTCCCATATAAAAAGACATTTTTTGAATactttacctttaatgagcagttttaggttcacagaaaaattgggcacaaaatacaag-agttcctgaatatccccatctttcccc------ctccctgctccatacagtttctcccattattgacacttggcagcagggtggtacatttgatcttaccacactgatgaatcaacattgatacattattatttacagatgtctatagtttagaatagggttcgttctttgtatgatataaatctctatag a score=12873 s hg19.chr6_ssto_hap7 3811117 372 + 4928567 tttgccttttccagaatgttatatagttgtaatcatatgggatatagtttttt--tttagctggcttctttcacttaacaatatgcatataggttttctccatgtctgttcatagcttgatagcttatttctctttaattttaaatgataacccatgatatagatataccacaatttgttcacccactcacttactggaggacattttggttgctttgaatttttggcaattatgaataaagcttctataaacattcgtatacacttgtttgtatggacaga-attttccactcatttgggtaatactcaggattgaaattgctgaa-tcttatggcagagtatgtttagctttgtaagaaacagctagagtgtct s canFam2.chr12 5144564 354 + 75515492 tttgccttttccagaatgtcatatagttgaaatcatacagtg-agagctttttagtctaacatgattctttcatgtagcaatatgcatttaag--gtcaccatgtcttttcaaagcttaatagcttttttcaaattg---ctgaataatacttcattgtatggacgttccaca----gtttatcaatccacctgtcaaaggacatcttggttgtttccaagtttc-----------acaaagatgctataaacattcctgtgccagtttttgtggggacatatattttcaactcattgagtaaataccaagga-aaacattgctggactgtaatataggagcatgtttagctttgtaagaaatcaccacagtgttt a score=1093 s hg19.chr6_ssto_hap7 3826537 27 + 4928567 CAAAAAATAAAGAATCAGTAACAAATA s canFam2.chr12 5152623 27 + 75515492 TAACCAATAAGGAATCAATCCCAAAGA a score=35261 s hg19.chr6_ssto_hap7 3826855 1322 + 4928567 GTGTTTTTTAAAATAAATGTATAGTATGTTTTAGCACCTTATAGAGCTAGTCATTCCTTATTCT----ACCTTTTTCAAAAAT-----TCCCCCGTTAAAACAACATGTCAGCATACTTAATTGAGTTCTAAAATCAA----TCCTTTTTCCT----GCTTTTTTGTTTTATTCTAATTGAGTTAATGGCAGACATTTAATGCTCGATACATATGTATTAAAAAAGA---CCTGAAACGCTGAATGGAGGATGCCTATCAGGAATCTCTAGGCCTTCATGTGGAATTTAACTGCAAATTCTAGCAACCTAAGAGTACCACAATCTATCATTTCCCTACCCTGAAATCAACCTCTCCTACTCCATCCACCATTTCTTTATTTTT-----AAAAATATATGATTTTGCTCCTTTTCTCCCCATGTGC---ATCAGGCCCACTCTACAAGGGTTGAATCCTGGCTTGTCTGAG----CCCGTGTGATCCCACGGTCATTCCAATG-----AGAAAGTGGGT--ACTGTGAATACtctggaaacggtgtagttgctccttataaaggcacacaggaaaaagtagtatctttttcctttctttggtagttttgtgaaagaataagaaacctaaagcggctgcagggatcctccgaccattgcaggaaagctgacatgctgtgtatgatagagagatgagttatgaagttccaggatcgctgttgatgccactggcttgctgagttgagcaaccctggagacgcccacccttgtatctattgcctatgtgagatcatGGGTTAAAGAAAAATAAAGCCCACTAGATGGGATTTCCTGCTGTTCACAGCAGAA-GCATCTTCATTCAAATATTCATCCCACACATTTTAGTTC-------------CATACCACAAGTCTCATATAAAATAAGACAAATCATCTCCTCAACTTAGGGAACAAGGCCTATTT---GTTGCAACTCTGGGATCAAACAGAAC------------------------AGACATAATTATTAGCTTAATATATTCCTATAGGATTTATGTTCTTATAGGATTTATAAGTACTTGTACTGATGTGTATGTACAAGTAACATATAACTAATAATAAAATATGCATAAATAAATATTGAATTTGAAAATAAGTTGTCTCTGACAGTAGAGAAATTATGCTCAAATGATTATTACTTTGAAATAGACTTCTGCATTGATTATGTACTTTTTAGTTTTGACATA--TTTGATACTGACTCT----CAGAACACAATGG-AGAACCCTCCATCTTCTAAATTTGTCT-------TTCTCTGAAATCTGTACAAGTCCTTTGGTAATACTATATTACTGAAGTCTCTGGAATGAAAAACCATATACTAATTTACAGTAATAGATACACAATATT s canFam2.chr12 5152650 1339 + 75515492 GTGTCAAGCAAAATTGATATATAACAGGTTTAAGCATTTTATCAAACTTAACACTTATTGTCTTTGAAAATTTTCTGGGAAATATATTTTTCCTTATAAAATTAAGTATTAACATG-----TTAACTTCTAAGAACAAATAGTCCTTTTGCTTAGTTGCTGTTTTTTTTCATTATAATTGGGTTTATAACTGCATTTTAATACTC--------CGTGTTAAAAACAAACCCTCAAAACCTTTATTGATGCACCCCTC-----AACCTATCATCCTTCATGATGAAAT-AATTAAAAATACTAACACTCTAATAGTTCCAGATACTATAGTTTCCTTACC-TAAAATTGTTCTCTTCTACCCGCTCTCACATTTCTTTCTTTCTTTCTGAAGATTAT------TTGCTCCCATCTTTCCAATGCATCAAATGAGGCAGGCCCCACAAAGCATGAAGCATAGTTTGTCTGAGACTACCACTGTCATTCTGTGGTCCTCTCAATGTGTGGAGGAAGTAGgtctactgagaacact-tgaagaaggtttagttctcccttataaaaatgtatgaggagaaactgttcccttttcctgtctttggaagttatg---aagaaaatgaagcctaaagctactgcagccatcctactaccatTTCAGGAATACTGACTTGTGGTGTATGATAAAGAGAAGAGATACAAAGTCCCAGGATCACTAGCAACACCATTGGCCTGATGAACTCACCAGCTTGGAGGTTAACTACCCAGG-GTCTATCTGCTACGTGAGACAAGGAGTTAAAGTCAAATAAAGCCAATTAAATTGATTTTTCT--CACTAGCAATAGAAAGCATCGCCACTGAAATATTCCTGCCATACTTTTAAATTCTACATTATAATGTCACACCATAGATCTCAGATAAAATGAGACAACTCATTTCTGCATCTTAAAGAACACAACAAAAGTAAAGTTGCAACCCTGGGATCAAACAGCATCTGATTAAACCATATAAATATTGAACACATGACTGTTAGCTTATTAAATTCCCACAGGA--------------GGATAACCTGTTTCACACATTAATGCATA------------ATAGAACTA----TAATATTTGTA-AAATAAACTTTGAATTGG----TCTGTTGTCTCTTATAGTGGAGAAATTGTGCTGAAATAGCTATTAACTTGAATTGAACTTCTGAATCTATTGTCTACTCTTTAGATTTGATTTACTTTTCAAAATGACTTGTCGACAGATTATGATAGCAGAACTCATCATCTCCTTAACCAATTTAGGTGTATTCTCTGAAACCTTTCCAACTTTTT---------TATATTATTGAAGTCTATGGAATCTAGAACTATATACTGATTTACAATTATAGTTCCACAGTGTC a score=2388 s hg19.chr6_ssto_hap7 3828514 106 + 4928567 TGTTGGCCAAGTTTCTTTCAGTTGTTACAGTCTCTTCTCAGTTTTTATGCATTGCCTTTGTAAATGTTAGGTTTACttttttaaccgacaagtaaaaaatttatag s canFam2.chr12 5154040 94 + 75515492 TTTTTGTCACATTTTCTTCA-TCACTACAGTTTGGTTTTAATTTTTACATATTGACtttttaaat-----------tttttaagttattatataaaatGTTTTTAG a score=3938 s hg19.chr6_ssto_hap7 3830594 90 + 4928567 AAGTCCTTTAGGCAGCAAAGAATACCTCATAGATGCTCTTTAACTGTAGGGTGACTCCAAGTACTAAAGATCTCAGCTTCAGCTCCAAGG s canFam2.chr12 5167109 90 + 75515492 AGTTCTTTAAGACACCAAAGAACACCCAATATGTGCTTCTTATTTACTGTATTATTTCAAGTACTAAAGATCACTGCTGTAGCTCCAGGG a score=59055 s hg19.chr6_ssto_hap7 3830773 1389 + 4928567 GAAAAGAAAGGAGGTAATGGG-GAGGCCACTGGGTCCATTCTCACATATGAGGAAGAGGGGACAATATCACAGGTTCTGTCAAGGGCATAACACAGGATTGTCTAGGAGAGACCCTTTGAATTCCCTTG-ACTC-CCAGAAAATTTTCAGAAAAAAACTCCTTTTGTCTAACATAGGTCAACATAATAAAGGGAAGTGCTGTATGGGGAATTTATTTTAGCATCCTTATTTCTAAATCCTCTGAGGACCCTGAGGACATGTGATGCAA--------AGGTTTCATTGGTGAAGATTTGAGAAGAAATGACCTGTATG-----GAGGCCCCTTACACAGTCTCATGGAGAGGGCAAGTAGTCAAGATCCTTTTGTGGAGGAAATAATTTGGGATCC---CATGATAAAGATGGGCAATCTCTGAAGAAAATGTCACAATTTCTTAAGGCACCTGGCCTGGGCACAATGTTAACACAACTCCCTATTTTCCG--CACCCCATAGTAGCTCAGCACCCACAATGTGCACTTATGTCAGGTGTCCCTAGCCAAAGCCAGTGGGGAGCTCAGCACCGTCAGTGTCACTGTCAGCGCTGCCATGTAGGAACCTCCAGGGAGCTTCAGACACACCATGCTGGAGAACAGGACAGGACCAGGGGCCAGAAGAGCAGGCAAGTCTCACTCAGGGAGAACTATGACCCCCCTCCACCCACATTCCAAATTATAGGGAGGAAGTTACTGATTTCCTTCCTCCTGGGTTGGGTAATCTCGTGTTGGAGAACCAATCAGCATCTGAGTTCAATAGTATCATCAGTTGCTGGTCAGAGATGCTGTATTTATGTCCTCTTCTGAAAC--AGAATTTCCTTCTTTAAAGGATTGTTTTAAATTAGTACTTGAAAGATTTGATCCAGTTGCATGTAAAACA-CTAACTGGGTCCCTATTGTTAGCCAGCTCTGTGCTGGTCAGTGATGTGTTCACAAGTTTGAGCCTTGTAAGAGCATTCATTTCCCACCTGACAAGACAACTGTTTGCAGAAGTGAG-TGTGTGA-GTGTGTTTAGGAGTAAAGGAGATGGAGGGAACATGGTTGTAAATC-GGAGACCTTTAATCTGGTCCTTATTGCACTGTATCTTAATGTTGTAGATTTGGGAAAATTATTTCATGTCTCACAGTTGAAATGAAGACACTGTGATCTTTCAGGTCTTTCAATACTGGAAAATGCTGTGATTCTGCAGACACCTCAAGGAGCAGCAGCCCCGGGTATCTGATAATATGACAGGATGACAGCTATTGACTAGAGAGCTTAATCCATACCTATTTACAGGTAGGGATGTCTTTAATAAGTTAAAGGAAATTGACAGTTTGTTAATAATTTAATCTGAGTAAAAATATCTTTTTCAAGTATGTCTCCTGATG s canFam2.chr12 5167286 1393 + 75515492 GAAAGGAAAGGAGATCATGGGAGAAACCTCTTGATACATTCTCACATATTAGAAAGAGACACCAACATAACTGATCCAATGAAGA-CATAAAACAGGGTCTTCTCAGAGAGAACTTTCTAATTCTTTTTCATTCACCATAAAATTTTCAGAGAAGCTTTCCTACTTTCTAGCATAACTCAACATAATAAAGGGAACTACTTGATGGGAA--TTAATTTGGAGTCATTATTTCTAAGTCTTCTCAAGACCCTGATGGAATGAGATGCAAGCCTGAAAAGCTTTTATTGGAGGAGAGTTGAGAAGAAATGGCCTATATATATGAAAGACCCCTTAAGCAA-CTCTTGTAGAGGGCAAGCCGGTGAACTCCTTTTGTTCTCAATAGAATTGGGGGTCTATATATAATAAAAATTGGTGGTTATTGAAGAAAATATCACAATTTTCTAAGGGACATAGCCTGGACACAGTGGCAAAACTAATTTCTTTCTTCCCTCCAACCCATAATATCTTACCACCCAAAGTGTGCACTTACGTGGGGTGTCCCTGGCCCAAGCCAAGGGAGGGTTCAGCACCATCAGTATCAGCATCAGAGCTGTCATCCAGGAGCCTCCAAGAAAACACAGACACACCATGCTGGAAAACAGAA-AGGA-CAGGGTGCAGGGGAGCAGTCAGGTGTCACTCAGTGAAGACTGGGACCCTACTTTGGCCACATCCTAAATAACACTAACCAAAGAATTCATTTCATTGTCCCTGGATTGGGTAATCTTGGTGATAAGAACCAATCAGCAACAGCAATATATTGCATCATCAGTTGCTGGTCAGAGATTCAGTATGAAGAGCCTCTTCTGAAACTTTGATTTTGTTCATTGAAAGGATTGTTTTAACTTAATACTTTAAAGATTTGATCCAGGTGTATATGAAACATTTTATTGGACCCCTATTGTGAGCCAGTTCTGTGCTGGGCAGTGATGTGCACGAAAGTTCGAGCCTTCTAAGAGTATTCATGTCTCTCTTGAAGACAGAATTGTTT-------TGATCCATGTAATGTGTTTTTaggagctgaggacatggagag----tgattgcaagtcaagaaccctttgctctggaccttgctgcaccatcacttagtgttgtagatttgaggaaaatatttaa--cctTAACCTTGAAATGAAGGCACTGCAATCTTTCTGGTACTTCGATA-TGGAAAGTGATGTGATTCTCTGGACAGCCCAAGGAGCAGCATCTCCTGGTAACTGATGATATAAAAGAATTATGGCTATTGATTGGAGAGTATAGTAT-TACCTCCTTATATGTAGGGAAGTCTCTGGTAAAGCTAAAGGAATTGAAATTCAGTCATTAAATTAACCTGAGTTAAAAGGTC--CTTCAAGTTTATTTCCTGATA a score=6713 s hg19.chr6_ssto_hap7 3832162 201 + 4928567 CTGCCCCCAAGTTTAGTGGCACCTCCAGAACACACACAGGCAAGGGGCT---AACAGGGGCCACATGTGTGCAATGGAGGGTC-TGAACGTGCCTTTGTACAGCACTTACCCTAAAAATATGATAAGGTCAACTTTGC-AATCCAAGTATTTGTGGGTTTGAGAGATCAATCGAAGACTCTCAAAGTCAGCTGTTCACAGAACAAC s canFam2.chr12 5169273 200 + 75515492 CTATCATTGAGTTTGGAGGCATCTCCAGAATATGCATAAGGAAAGGGCTTAGAACATGATC----TATGTGGAATAGAGGGTCTTGAAAGTTCCTTCATATAGCACTTAACCTAACAAAGTGATAAGGCCAACTGCCCAAATCTACACTTACAGGGAGCTAAGAGATTGATAAAGGA--CTCAAAGTCAGCTTCTAGCGTAACAGC a score=13458 s hg19.chr6_ssto_hap7 3832668 295 + 4928567 TCTGttttaaaataattaatattttatGTG--AAGAGTGTTCAATCCCTCATTCCTGGTTCCATTATGATTTCCTCATTTGATTGAGGCTATAGCACTTTACTATTATGTTTCTCTTGTTTTATCATAAGGGAAGATAGAAGATGACTTTGCTAACTAATACATTTTAGAATGTTCAGGAAAGAGAACACTAGGGAAA-ACTATGAATTACATCAGTTGATGTAACCatataatattaaacatat------acatttagataattattatgctttttattaatataaatGTAACATCTAAGATT s canFam2.chr12 5169473 301 + 75515492 TCTGCTTTCGGATAATTAATA-TATATGTGGCAAATATGTTCAATCCATACTCCTGGATCCCATTCTGTTTTCCTCATTTTACT--GGATATATGTTTTTAGTGTGCATCTTCTCTTGCTTTGTTTTAAGGAGACATATAAGAAGCTGGTGCTAATGAATACATTATAGAATGTTCAGGAAATAGAACACAATGGAAATATTATGAATTATATCCTTTGATATAACCATATAATTTTAAACATATATTTCCACTTTTAGaaaattattatacattatattaatataaatGTAATATCTCAGATT a score=9123 s hg19.chr6_ssto_hap7 3832963 259 + 4928567 CAGAATGGACTTCAAAGTACAACTATACTTATAGCGTTCTGCATTAATTCACACGCTACCAC------ATAGGCACTCATTCCTTATGGGCCTTAGTGTTTCCAGGGGCAGGATTCTCACCATGCTGCCATAA---------------------AAA---tgagcattttactttatactcagaattgtactaagcgctttttatacttcatgtttttattccattctcacatcagctcagtaaaataaacacccttttcatgcttacaggtagagagaataaaacaat s canFam2.chr12 5169983 275 + 75515492 CAGAATGGACTTTAAAGGACAACTATCTATCTAAACTTCTGCATTAATTCACATTCTACCACAGTCTGATAAACAGTC---CTTTATGGAC--TAGTG---ACAAACTATGGAT----ACCATGTTGCAATAACATGACTAATATTTACTAAGCAAATTttgagcattttgctttgcacccag-attataa-aagggctatttatacatcatatttatatttaattctcacatcacctcagtgatttgagtaccctttgcatccttatggatggaaagaataaaatgat a score=26867 s hg19.chr6_ssto_hap7 3833227 672 + 4928567 tgaaacaacttttgcaaagatacacagctagtaaatggtacactatagattgaaccaaattacat----------acccctcaggctcagccactatatcaTAATCCTTCACATTCTATTT---CTGAGAATAATGTCCTATGTATTAAAATTATTTATATTCCTATAATTTATGGATGCACATAGCAATATGGCTACTCATGTTAATGAATG-GCAGCAGTATACAATTTGAGGAAGATACTGTGTAGCAATTCTAGTTCCTTCAAAAGAACCCCCTCATTATCATCCTTACCCTCCCCTGGAAATGACAACATTTGCATTTGTCTTATGTGATGACACCCATAGCTCCTGAGAAGTCTCCTTCTTATTAAAGGTAATAGTGACCTCAAAATTCTTAAATAAAAACTATTGCTCAGAATTATTATTTCAGATTTCTCATGATAAAGTAGT--AAATTTGATCATCTCAA-AATAGAAGAAAAAAGTGCCTCACTTACTTTGGAAAAACATACTTCTATTAATATAGAAAGTTCAAAATTTCAC---------GGGTGAAAGTCACTATTGTCCCTGGATTTGAGAATAAACTATGTCTCTATACCCCAATAATAATTCAATACTATTGGAAGTTGTGAAATTGCAACC---AGAATATCACATTTAATTTGGTCAACAGAAAATAATAATTTACTTAGAA s canFam2.chr12 5170466 698 + 75515492 taaaaaagctttggcaaggacacaaggcaagtaaatggtgtattccagattgagccaagttatatgtgagtctaaatcccacacgtccaaccattacaccTTACCATCTCACATTTAATTTATGATGAGAATAGTGACCATTATGTTAAAACTATTATTGTCACTTTAATTCATGGTTATGGATGTCTATGTGACTACTCTTTTTAATGAATACAGAACTTTATATAAATTGAGGCAATTCCTCTGTGGTAATTGTAGTTCCTCCCAAAGATTCCTCTCATCACTATCATAAACATCTTGTGAAAATGACAAACCATGCATTTATCTTATGCAATGGCTCCCAAAGCTCCTGC-AAATGTCCTTCTTATTAAAAATAACAGTGG-CTCCAAATTACTAAATAAAATCTATTGTTCTCAATCATAATTTCAAATTTCTCAGCATGATTTATTACAAATTTAAATAAGTCAAGAATAGATAGAAATTTTATCTCATATAGTTTGGAAAAATGTATTTCTGCTAATGAGGAAACTTCAAAGTATCTTGTACAAGTGGGATAAAAGTCATTGTTGTCCCTGGATTTCAGAAGAAAGTATGTTCCTAGACCCCAGTTTTAATTCAGTTCTATTGTAAGTTGTACAATTGCAACCAGGAGAATGCCatatttaattttagaaat-taaaataataatttaCTCCAAA a score=40966 s hg19.chr6_ssto_hap7 3848667 1588 + 4928567 AAAATAAATGTATAGTGTGTTTTAAAACAGCACCTTATAGAGCTAGTCATTCCTTATTCTGCTTTTTTTCAAAAATTTCCCTAGAAAATATATTTA-CCTCATAAAATAACATGTCAGCATACTTGAGTTCTAAAAACAA----TCCTTTT---TACTTGCTTTTTTGTTTTATTGTAATTGAGTTAATGGCTGACATTTAATACTCAatgtatgtatattatatatatttatgtttttaaaatatatatatttaaatatatgtataataaatagatatgtatTTAAAAAGACCCAGAAACCCTGAATTGAGGATGCCTATTGGGAATCTCTAGGCCTTCATGTGGAATTTAACTACAAATACTAACAACCTAATAATACCACAATCTTTCATTTCCCTACCCTGAAATCAATCTCTCCTACTCCATCCACCATTTCTTTATTTT------AAAAATATATGATTTTGCTCCTTTTCTTCCCATGTGC---ATCAGGCCCACTCTACAAAGGTTGAATCCTGGCTTGTCTGAGCCCA----TGTGATCCCACGGTCATTCCATTGTTTG-AGTAAGTGGGt--actgggaacactctagaaactgtttagttgattcttataaagacacacaggaaaaagtcatatccttttcctgcctttgggagttgtgaaagaataagaaacctaaagctgctgcaggggtcctcctaccatctcaggaaagctgacgtgctgtgtgtgatagagagatgagctatgaagttccaggatcgctggtgatgacactggcctgctgagttgagcaaccctggagacgcccagcctcggatctatcggctatgtgagataatgggttaaagaaaagaaaagcccactagatgggatttcctgctatttgcagcagaaggcatcttCATTCAAATATTCATCCCACACATTTTAGTTCTACCTTAGAATTCCACACCACAAGTCTCATATAAAATGAGACAAATCATTTCCTCAACTTAAGCAACAAAGCGTATTT---GTTGCAACTCTGGGATCAAACAGAAT------------------------AGACATAATTATCAGCTTAATATAATCCTATAGGATTTATATTCTTATAGGATATATACATACATGTACTGCTATGTATGTACAATAATACATAACTAAAAACAAAATATGCATAAAATAAACATTGAATTTGATTGAAAATAAAATAACAGTTGTCTCTGACA---GATAAATTACGTTCAAATGATTATTACTTTGAAGTAAACTTTTGAATTCATTATGTACT-TTCAGATTTGACATA--TTTGATGCTGACTCT----CAGAACACAATGG-AGAACCCTCTATCTTCTAAATTTGTCT-------TTCTCTGAAATCTGTACAGGTCCTTTGGTAATACTATATAATTGAAGTCTCTGGAATGAAAAACTATATACTAATTTAAAGGTACAGATTCACAATATTGTAGATGGGGTTAAGAAAAAGTTCTGATTGACTTGCTGGCTGGTTTC--TCATCTCATGTTTGCCAAGTTTGTTTCAGTTGTTATAGTCTGTTCTCAATTTTTATACATTGCCTTTTTGAATGTTAGGTTTACttttttaattgacaagtaaaaattgtatagtatattta s canFam2.chr12 5152659 1483 + 75515492 AAAATTGATATATAACAGGTTT-----AAGCATTTTATCAAACTTAACACTTATTGTC---------TTTGAAAATTTTC-TGGGAAATATATTTTTCCTTATAAAATTAAGTATTAACATG-TTAACTTCTAAGAACAAATAGTCCTTTTGCTTAGTTGCTGTTTTTTTTCATTATAATTGGGTTTATAACTGCATTTTAATACTCCGTGT--------------------------------------------------------TAAA--------------AACAAACCCTCAAAACCTTTATTGATGCACCCCTC----AACCTATCATCCTTCATGATGAAAT-AATTAAAAATACTAACACTCTAATAGTTCCAGATACTATAGTTTCCTTACC-TAAAATTGTTCTCTTCTACCCGCTCTCACATTTCTTTCTTTCTTTCTGAAGATTAT------TTGCTCCCATCTTTCCAATGCATCAAATGAGGCAGGCCCCACAAAGCATGAAGCATAGTTTGTCTGAGACTACCACTGTCATTCTGTGGTCCTCTCAATGTGTGGAGGAAGTAGgtctactgagaacacttgaagaa-ggtttagttctcccttataaaaatgtatgaggagaaactgttcccttttcctgtctttggaagttatgaa-gaaaatgaagcctaaagctactgcagccatcctactaccatTTCAGGAATACTGACTTGTGGTGTATGATAAAGAGAAGAGATACAAAGTCCCAGGATCACTAGCAACACCATTGGCCTGATGAACTCACCAGCT-TGGAGGTTAACTACCCAGGGTCTATCTGCTACGTGAGACAAGGAGTTAAAGTCAAATAAAGCCAATTAAATTGATTTTTCT--CACTAGCAATAGAAAGCATCGCCACTGAAATATTCCTGCCATACTTTTAAATTCTACATTATAATGTCACACCATAGATCTCAGATAAAATGAGACAACTCATTTCTGCATCTTAAAGAACACAACAAAAGTAAAGTTGCAACCCTGGGATCAAACAGCATCTGATTAAACCATATAAATATTGAACACATGACTGTTAGCTTATTAAATTCCCACAGG--------------AGGATA-------ACCTGTTTCAC---------ACATTAATGCATAA-TAGAACTATAATATTTGTAAAATAAACTTTGAATTGGTCT---------------GTTGTCTCTTATAGTGGAGAAATTGTGCTGAAATAGCTATTAACTTGAATTGAACTTCTGAATCTATTGTCTACTCTTTAGATTTGATTTACTTTTCAAAATGACTTGTCGACAGATTATGATAGCAGAACTCATCATCTCCTTAACCAATTTAGGTGTATTCTCTGAAACCTTTCCAACTTTTT---------TATATTATTGAAGTCTATGGAATCTAGAACTATATACTGATTTACAATTATAGTTCCACAGTGTCCAA------GCTCCAAAAATACTTGGTTTACTTTTCTAATTTGTTTCCATTATGTACTTTTTGTCACATTTTCTTCA-TCACTACAGTTTGGTTTTAATTTTTACATATTGACtttttaaat-----------tttttaagttattatataaaatGTTTTTAGGATCCTCA a score=22264 s hg19.chr6_ssto_hap7 3850346 638 + 4928567 ATATACATGAAAACCATTATTCTATTGGGAAATAATCTTCCC--------------------TTTTTCTTATTTTTTGTCCTTGCAGCCAAATGGACCAGATAATTTTTAACTCCA----TGTTTGAGAAACATTTAATAATGCAATGTGTGGCACAAGGGGAGTACAGATGCACGGGAGGCA---GGACAGTTTAGGTAAAGGGAAGCACAAAAGTTGAAGATGAGGCACTGCCATCAAAGCTGTGAGGCTTCAGGCCAAGAACAGGAGCTAAGGAAGCCACAAGGGAGGACATTTTCTGCAGAGTTGCTGAA-CCAGTAACAACCTGGTCCTGACAAAGCTCT-----TGTGGAAGAATAAGAGCCAAGTGGGAAAGCTTTTCATCTTGCAAAG---CTGGGGCAGAAGGTTCTTCCTTGAATGTGGTCATCTGCACTTCAGCTCAAGAGTCCTGCAGA-GACAGAGGAAATTGTT--TTCAGACCTGGCTTTACTAA-AACTTCTTTTCCCCGCTTTCAACGACTCAGATGAGAGCACTGCAGGGAGAAGAAAAACAAGTTCCTAAGTCTCCCTGAGCCAATGATCCTGCAAAGCACAGGCCTTTT-CTAAGTGGAGAGGAGGAGTTCTGGGGTAAATTGCCTGATCAGAAATCTGGATCCAAAGTCTTTCCTATT s canFam2.chr12 5155218 663 + 75515492 ATATCAATAAAAACCATTATTTTTTTGTGATG-AATCCTCCCATTCTCCCTCTTTTTTTTTTTTTTTTTTACTTCTCTTCCTTGAAAACACATGAAGCAGATGATTTTCAA-TCCACATTTATTTGAGAAAAGTTTA-TAAAGAAACATG-AGCAGAAGGTGAGTTCCCATGCAAGGGAAACATAAGGGCTGCATAGGAAGAGGAAGG---AGAGAATGCAGATAAGGTACTGCAGTCAGCACTG-GGGGTTCCAGGTCAAGGACAGG-GCAGAGGGAGCCATTGGGGAACACAAGCTGTGCAGGGTCACTGAAGCCAGGGCAAACCAGATCCTGAGAAAGCGCTGTATTTGTAGAAGAATAAGAGCCAAGCTGGAAACCTTTGGACTCTGAGAAGAAGCTGGAAAGGAAGGTTTTTTCTTGAGGGTCACCATCTCCACTTCAGCTCAGGAGTCCTGCAGAAGACAGAGCAGAGTATTGTTCCAGACCCACCTCTATAAGCAGCTTCTTCTCCTCTCTCTCAAGGCCTCATGTCAAAGCGCTGCAGT------AATTACATATTTTTAGGTCTCCTTGGGCCAGAGCTATTTTACAGCGCAGGCCTTTCACTAAGTGGAGAGAGGTAGCGTCAGTATAAACTGCCAGATCAGAAGTC-AGATCCAAAGTCTTTCCCACT a score=80807 s hg19.chr6_ssto_hap7 3850984 1826 + 4928567 ATTTCTGTCTCAT-------GCCTTATCACCTCTGCCATC-ATTCTAGGGAAACTGAATCTCTTTCTGAAAGAGGATTAAAAGGTATTACCTGTTGGCTGAAGTCCAGAGTGTCCTGGGAAAAAGAGGAAAAGATATACACTTAAAAGATATGGAAGCAAATCTGTCTTCTAACACAATGTCCCAGCCCCAGATCTCCCACCTGAGATTTCTCTAACACCACAACCCACACCA------ACCAGGGCAGAGAGGAACAGAAACAGACCATGTGACCCATGAAGCATGAGGTGTCTGTCACA-GGATCCAGCGTAATTGCATTAGCCTTAGTGGCTCTTCCTTAATTTGCTCCAGGATCTCCAACCAAAGAATCCCTACTTGTTAACCTTTCTCTTATCTCTGCAGGCCACAAG--CTATTATGCTTTGACATAGTAACCATGCACTGATGATTTCTGGATTATCAGGACATTGGAGGTCATTTGGGGAAAGAAAGGCTTTATCCAGGGCCACTGATATACTGAGAACTAACCCTAGCAAAGTCATAGTTCCTCCTCCAGAAAAGC-CTATGGAGATTCAGCTCCCAAAAGCT-CCTCACCTTTCTGATTCCTGAAGTAGATGAACAGCCCTGTCCCAAGGAAGAGCAGGCCCAGCACAAAGCCCCCGACTCCACTCAGCATCTTGCTCTGTGCAGATTCAGACCGTGCACCTGAGAGAGGAAGCCAGGTTTAGTGTTTATT---CCAAATTGA--ACCTCTGTAATTGAGA------------------------------------CCCTAAGATTCAGAGCTTTCAAAATG-GGAAAGAAGGCTGCCCTGTAAGAACTAAAATAACTAGCCATTTCTGGGGGAAAAAACGGTTTTCAAATCACACTGTAACAGTTACAAGGTCCAGGCATCAAACTCATTTCAAATATTACAGCCTTGATGTAAGGCGCAACTTCAAAATCTGATCAACAgaaagcctgagtctcagtgaggt-taagtagtttgtctagagtgacagagctaataaaaggcagagttgagattggactcccctcatgtcaggaaggcccctagagttc------tcctcttCTCACAACAAACAACTCAGATCAACAGCACCAGAAACGCAGTCTCAGACCCAGAGGCAG-GGCCTGGAGCCTGGGGAGAGTGGGTGACCCTGAACTGGGACATCATGGGGAGGTTCAAAAGAGGGACAGCCTC--TCCCGCCTGGCAGGCGTGACTGATTCCCCAGGGGGTACAGGTGTTTCTAGAAACACCTACAGG------------------------------GCTACCCCCAGTAGCCCAGTGACCTGTGCTGATGGAGATGAGAACATGGAGCAAATGAAAATAGGATGTGGGAGAGGAGAAACCTGACACTCAGGGATTAGCACAGTCCCCTTCTTGGTGGGTGAGAAATTTAGGAAGTCAGAAAGCTGCTAACTCCATTGCACCGTGAGAGGGCTCATCATGCTTGGATGCTCCACTTGGCAGGTGTAAACCTCTCCACTCCGAGGAACTGTTTCCAGCATCACCAGGGTCTGGAAGGTCCAGTCTCCATTCTGGATCAGGCCTGTGGACACCACCCCAGCCTTCTCTTCCTGGCCGTTCCGGAACCACCTGACTTCAATGCTGCCTGGATAGAAACCATTCACAGAGCAGACCAGGAGGTTGTGGTGCTGCAGGGGCTGGGTCTTTGAAGGATACACAGTCACCTTAGGTTGGACTAGGAGAAAAAAAAGGTAGTGGGAATGAGTCATGAAGACAG----AGTAAGTCTCCTTGTTTGGCTGTTTGTCTGCTTC---TCTGCAAACCCAGGCTCTGACCTTGACCAGGCCTCCAGCACAGCTGGCCATGTGGCCTTA-------CAGTGTCATCAGC s canFam2.chr12 5156076 1887 + 75515492 AAGTCTTTCCCATTATTTCTGTCTTTTCACCTTTACTATCTGCTCCAGGATAACCAAATCTATCTGT-AAAGGGGATGAAGGAGCATTACCTGTTGGCTGAAGTCCAGAGTGTCCTGGAAAAGAGAAGGGAAGACATAGACTTAACAGATATGGAGGTAAATCTGGCCCCATAGACAAGATTCCAGCCCCAGACCTGCCTCCTTAGATTTCTCTAACAGCCCAACCCATATTGCATGATGCCAGGGGAGAGTGGAA----AGTGAAAGATATGACCCATGAAG-------TCTCTGTCACACAAATCCAG-----TTTCATTAGCTTTAGCGTCTCTTCCTGCATTTGGCCCAGGATCTCAACCCAAGATCCTCATGCTTGTTAATCTCCTTCTTAGCTCTACAGAACACATGACCTCTTAGGCTGTGACACAGTAACCATGGACTGCTGACTTCTGGATTTCTAGGGAATCTGAGGTCAAATTGGGAAAGAATGGCTTTATACAGGGCCATCGGTACACAGAGAGCT--TTTGATCAAAGCTGTATTTCT--CTCCACATAGTCTCTGGGGAGTCTCAGTTACCAACAGGTGCCTTACCCTTCTGATTTCTGAAGTAGATGAACAGCCCCACTGCAAGGAAGAGCAGACCCAGGACAAAGCCCCCGATTCCACTCAGCATCTTGCTCTGTGCAGAATCAGACTGTGCCCCTGAAAGAAGAAGC-AGTTTTAGTGCTTTTTACACCAAACTGATGGACACTGGGATTGAGAATGTCACTTTAGTGATTTTTACACCAAACTGATGGACACTCAGTTTGAGAACTTTGAGAATGAGGAAGGAAGGCTGCCTTGGAAGAAGTAGAATAATTAGCAATTTCTGGAAAAGAAA-----TCTAAAATCACATTG-AGTAGATACGAAGTCTATGCATTGACCT--TTTTAAATATCACAATTCTGACA-AATCCACTACTTCAACAtct-atggatgaggagcctgggactccgtgaagtacaagtagcttgtgcagggtgacagagctaataaaagg--aatccaagattggattccCCTCAAGTCAGAAAGGTCCCTACAATGTAAAGGATTCTCAGATGACAATGAAGAACTCAGAGCAACAGTGCCAGAAGCACAAGCCCAG--CCAAAGGCAGTGGACTGGTGCCCAGTGTCAAGATGGAACTCTGACCTGTGA-ACCATGGAAAATCTGAAAACATGGATAACCTCCTTTCTGCCTGCCACATCTAACTGCCTCCCCAAAGACTGCAGG-ATCTGTAGAAATAATCACAGGATATCTTAAATTATCAGAGGACATCACTCAGCTACCCCCAGG--------GACCTGTGCTAA-ACAGAAGAGAATACGGAGGAAAAGAAAATATGGTATAAGGAGAGAGAACCCTGACACTCAGAAATAAGCA-AATCCCCTCTTTGGTAGTTGAGGAACTTATG---TCAGGAAGCTTCTCACTCCATTCCACGGTGACAGGGCTTGTCAAACTTGGGTGCTCCACTTGGCAGGTGTAGACCTCTCCGCTCTGAGGAACTATCTCCAGCATCACCAGGATCTGGAAGGTCCAGTCTCCATTACGGATTAGGCCTGTGGACACAACCCCAGCTTCCTCTTCCTGGCCATTCCGGAGCCACCTGACTTCAATGTGGCCTGGATAGAAACCATTCACAGAGCAGACCAGGAGGTTGTGATGCTGCAAGGTCTGAGTCTTCGTAGGATACACAGTCACTGTAGGCTCGACTAGAAG--AGAAGTGGTAGAGGGACTCAGTGAGGAAGACAGACAAAGCAAGTCTCCCTGGTTGGCTGCCTTGCTGCCTCCAGTCTCTGGTCACAGGCTGC-ATTTCAAGCAGGCTTCCCTCAAAACTGACCATGTGGCCCAATAAGGGCCAGTGTCATGAGC a score=11170 s hg19.chr6_ssto_hap7 3852810 364 + 4928567 CTGGAATTTAATCTTGATAGTGAGGACCCATTAGATTTGAGAGATGTTGTGAAAAATTGT---GTTTGTTTCTTCATAGCTTGAAATTGGCATGCATTG--TCAAAGTGTTTACAAATCTTTGacag--tagagtgta-gtaattaaaa--ctgatatctgagccatgttgcctggttgaa-----atccaaggtctgcc-ttttactggttgatgctggaagagttttttgattcttctgtgtctcaactttgtcacctacaatgaaggataattatactaatttacctcttggggttatatgaggattaatgcacgtaaaatatataaaacaatgact-gAAGATAGCCTTCAATTTATGAGGTTAGAAAGCTTGTCAC s canFam2.chr12 5158189 360 + 75515492 CTTGAATTTAATCCTGACTGCATGAGTCCATTAGATTTAAGTGATGTTGCAGAAATTTGTGGGGTTTGTTT-TTCATAGAGTGAAACAGTTTCTTGTTGAATTGAGGTGTTTACAAATTTTGCAAGGCATATAATGTATTTAAGtaaaagcatgatttctaga----gaagcctgactaaattcacgtccagactctattactttactgattcatcctgggagaatttttacattcttctgtgccccagctttttaacctatcaaggaggatagtaatactaacttagctctcaaggttacatga-tactaatgcacccgaggtatataaaacaataactggaatttagctttcaatata---------------tgttac a score=3552 s hg19.chr6_ssto_hap7 3853174 49 + 4928567 TCCATTCCACTGTGAGGGGGCTCATCACACTTGGGTGCTCCACTTGGCA s canFam2.chr12 70151623 49 - 75515492 TCCATTCCATGGTGACAGGGCTTATCGAACTTGGGTGCTCCACTTGGCA a score=28615 s hg19.chr6_ssto_hap7 3853227 1037 + 4928567 TTTATCATCCTTGTACACCGTGACAGAAAAATATGACTTAAAGCAATGTGGGTAGATAAAGGGACAGAGTTGGGTACATGAGGAAACCGAGTATGAATTTTTGGGAATACTACCACCATGCACTCACACCTTAGAACACCACAGAAATGGTTCTGCCCCTGGGAAGGTGGGACAGACAGAAATGATTCTCAAATTTT------TACGTTCCTAGAAAAGCATGAGTCCTAACGCAGAGAGAATGATTAAGGAATGTCATTTTAGTTTTGAAAGTTCTTACGTTTACATTTAGCTGATCAATGTATCTCCTGTGCAACACAAGCTTAATTATTATTAGGCCTATCATTGTAAAATGATTTTTCT--TTCCAGAATGACATTTGGATT-AAGGCAGTGTCTGGGACTCGTCACTTGGGGTGCTTAT-GCCCAGGAAAATCCCTGACACTAGCATACTCTCAATAAATACAGTTTTTTTTTAGAAGTAAGGAGAAACCTGGAGACAAT------AATACCACAAAATGGTGGATTTAAGA-TGATTGTAAATCATTAATACAAATTTCGCaatatattttattaaataaaaatGTTCAAATTCTTAACATGGAAAATACTTTTCAAAATCCACATACAAACCACAAACTGGAGAAAATGCTGAATCAAATATCAATAAAGTGTTAATAATCTTACAGTACAAAGAACCCACAAAGTCACTGAGAAAAATACTA-AGCCCTTAAGATATTAGACAGTAGATCATTGTACATTCCCTACCAAATGAAATAGGGAATTCTTACAGCAGTAATTATAATTGGCCAATAAATAGGTCAAAATAATTCAAAAGAAT--TACAAATGAA--AAATATAAAGTAAAAATTAACCAGAAACATACATTTTCAACTTTTGGTGAAAGTCATAATAAAGGTCAACAAAAAGGGGAAAGTGAGGTAAGTTGTGTCACAACTATTA-TATACAAAAGAATAAGATGTAACTACTAGAAAACTATTAGCATTATAATAAAATAGTAAC-----TGTGTT-------AAAACTTTAATTCAAAAAGTTAG s canFam2.chr12 5158549 996 + 75515492 cttattatCCTTTTTAATTGGG--GAGAAAATATGATTTGAAGAAGTGTTGCTAAAGTGGGGAACACCCTAAGATAGATGGGGGAAGAGAGTAGGACATCCTGGGAAAGCCA--------CACTCACACCTTAGAACACCATGGAAATGGATCTACCCT--GGGAAGCAGGAAAGACAGAGGTGCTTCTCTAGGTCTGGGAGCTGAGTCCCAAGGACAGTATGAGTCCTGA---AAGGGAAAGGAGCAAAGGAACTCA-TTTATTTAAAAAAGTTCTTATAATTGCATTTGCCTGATTACTCCTTCTTCTTTGCAATATGAAAATATCCATTATTATAATTGTCATCATTTCATTAATTTATTAATTATAAACGGACATTTGAATTCAGGGGAGTGTCTGAGACTCATTAAAAGGTATCCTTAGAGCCTAAGATAATCCCTGACACT---ACAGCCTCCATAAATACAATTTCCGTTTTTGTAAAAGGAGAAATACGAGGAAAACCTTTTACAAACCATAGAATTATAGATCTAAGATTGATGACAAATCATTGCCAACTATTTTGTAGCAAATTTCATTCAATAAAAATGTTTACATTCCTAGCATGAAAAGTAATAAACAGAATCAAAATATAAACCACAAACTAGGGAAAATGTTGAATCAAATATCAGGAAAGCTTTAATAATCTTAT-GCATGGAGA---CACAAAATCACTGAGGAAAAAATGAGAACTCTACAGATAATAGACAGGAGAT-------------------------------AATGTTTACAGTAGCAACAACAATTAGCCAATAAATATGTGAAATAAATGTTCGAGAACTATATAAATCAAACaaatataaattaaaaataaaaaaGA-----------TAAATGTTTGGCAATATGGATAA-AAAGGTTCTAACAAAGAGGAATGCGAGGTGAATTGT--------TATGACTATGTAAAGAAATCACATGCAACTCCTTAAATACTTTCATCATCATA--AAAATAGGAACATCAGTATGTTAAGTAAGAAAGTTATAATTAAAAAATCTGA a score=3654 s hg19.chr6_ssto_hap7 3854264 115 + 4928567 TTTCACAGTCACTTCTGCTATGTAAAAATATACACCCTAAAAAA-ACAAAAACTAGCAAGAAATTTAGACCTA-AAGAAGCTTCAGAGGTGCCTCAGAGGTCTCCTCAATTCCCCTA s canFam2.chr12 5159748 108 + 75515492 TTTCACAATCATTTC----ATGTAAGAATACATACACTAGGAAATACAA-----ATCAAGTAGCTGAGACCCAGAGGAAGCCTCAGAAAGATCAGAGAGGCCTCCGAGGTTCCCTTA a score=10406 s hg19.chr6_ssto_hap7 3855392 177 + 4928567 GCTCACCTCGCCGCTGCACTGTGAAGCTCTCCACAACCCCGTAGTTGTATCTGCAGTAGGTGTCCACCTCGGCCCGCCTCCGCTCCAGGAGGTCCTTCTGGCTGTTCCAGTACTCAGCGTCAGGCCGCCCCAGCTCCGTCACCGCCTGGTACTCCCCCAGGTCACTGTTGTAGCGCG s canFam2.chr12 5252264 177 + 75515492 GCTCACCTCGCCGCTGCAACGTGTAGAGCTCTTCCACCCCGTAGTTGTGTCTGCACACCGTGTCCACCGTTGCCCGCTCCTGCTCCAAGATCTCCTTCTGCCCGTTCCAGTACTCAGCCGAGGGCCGCCCGAGCTCCGTGACCGCCCGGAACTCCCCCACGTCGCTGTCGAAGCGCA a score=43635 s hg19.chr6_ssto_hap7 3855569 1829 + 4928567 CGTACTCCTCTTGGTTATAGATGTATCTGATCAGGTTCCACACTCGCTCCGTCCCATTGAGGAAATGACACTCACACTTAGCCTGCTCCAAGAAACGTGCTGTGGGGACACGAACGATCCGGTCACACGGGCGGCCTCCTGAGAAGACACTGACAGCGACGCCACCAACCCGGACTCCCTGGGCGGGGTGCGGGCGCTGGGAACCTTAACCGGCCCCACCCGCAACGCCCACCACCAGCAGCCCAGGGGCTCGTCCTCAGTCTTCCTGAGGCGAACCGGGGTCTGGGGGACCAGGCGGGA--AAACCCCTTCTGATCCTCA----GGCTTTTGGGGACCCCCTCCCTGCCTCCAGCCTGTTCTGGAGAACTCCAAGCAGG--AGCTGGAGGAGGATCCGCCCAGCACCGCGG-------CCCACGCGGCCTCCTTCTGGGAGTCTTCACCTGAAAGACACTCTCTG-------------------------CTCCTCTCATCCCACACGCTTTACC---GGTTCCT------TCAACAGCACCCACCGTG----ttcatc---ccgtgaacccttccttagtgctgaccttgtgcctggtctgcgctgcctctaggaatccaaacaaaggaaaacagacctctccactccgctgggggagcttaaagagcagtgaacgtgatggccaaaaaccaaacacacaagagcttagacaggaatgagaaacgtcagaagtgtggagttctggaacagagaataaaaggatgatctcaattacattagggtgccagagaaggaccctctgaagagtgacagttcagatgtgacttgacaggttaagcaggt-------------gagagccagggggcagagtggatggagcctgtgtgtct-gtctggacaaaacgggaggcacattttcaggtttagg-aaatccca-tgtacaaaaggtt----gaattgatgagcttcttcaaaaaactagaacaa--agttcactaaagcagagaggctgaggggaaggaaggtaaaagattaggctggagaaatcacaagaaggcaggtattgaaaagcctcgtgggtggtgttaggattttggattta-actaaagacaatggtaaagtattgaagagttttaaggagaataaaaccatgatcCCGGTAAATGTCCACAAACTTTCCTTTGAATTTCTAAATCCACAAAGCTCTGAAATTCAG---TTAAAAAAAACTTGTTTCCACAACTCATTTGGCAAATATCATCTGATAAGGGTAAGTGGTCAAAGGTGTCTCAGAGCTCTTATTG----GTGACATGTGCTTCTGTAGTTTCAatacatataaacacacataca----gatatatgtgaaaatata--cacatatgtaAAACACTGTATATATTTTTGATGTTTTTGTCTTTATGTTTG-------------AAGT-----------Gtgaaaatgacaaaaaataacttaaaat-------aatcctgtgggtaaaagtgaaatgaataaatagtagcattttacattgtgaataatataaaatgtagaatcactacacaaatctgaggcctgttagt-gagaaacagtttcagcagcatcactatttgtgacttacaagagcaagttgttgaaagttaatagagatagtgatgaccaacaactcatgaaaatgttgaaaaatattgcataaggcaaaaaataaatatgaaaatattaagcttgcattgactaaatggattcaacaagaaaatggttgaatttatgtaactgtctaatttttta------taatgaaacaaccaaaaataaaccataaaaaactgaaCTGTGTGGTGA--GTGTATACCAGATGTGAGCCTAGAATTTTCAGAAAGAGCACAG--TGTGAACCAGTGCtcttagcctcagcacta----------ttgacattttgga----ccagataattccttgtt s canFam2.chr12 5160646 1828 + 75515492 CGAACTCCTCCCGGTTATGGATGTGTCTTTCCACGAACCGCACCCGCTCCGTCCCGTTGGTGAAATGGCACTCGGGCTTAAACTGGTACACGAAATGTGCTGTGGGGACG-GGGGGATCCGGTCACCAG---AGGCTCCTG-GAAGACACCGACGGCGGCACCCC-----------------GCGG------------------------CGGTTCCACCCGCACC-CCAACCACCAGCA--CCCACGGTTCGTGTTTCCTCCGCTGGCGGGGGA--GGGG---AGGCGGCCCGGGGGGACGAGACCCCG-------CTCAGGGGGGCCTTTGGCGGCCA---CTCGGCTCCCGGC-----TCGGGTGACCCGACGCCCGCCAGCGCGAGCAG-------------CCGCGGCCTTCACCCCTCCCCGCCGCCTCCCGGACGCCTCCCCGGGACAGACAgcccctggctcctcgccctcgcccctggctcctccccctcacccctcgcccctcgcccctggctcctcgctcctcgccctcgcctccCGCAGCCCTTTACCTGTCCTCAAACACGTCCCTGCTGCTTCCCCCTGGTTTGGGCTGAGCCGCCCCTGTGAATCCAGAGAAGGGAAGACACACGTCCC--CTCCGCTCGGGGAGCTCAAAATGGAGGGAAAGTGACGGACCAAACCCAAAGTGGCAAGACTTTGTACAGAGGTGAGGAATGTTAGAGGGATGAAGTTCTAGAACTGAGAATAGTTGGGTGGTCTGAATTACCT--GGGTGCCAGAGAAGTA---GTTCAAGGGTGACG--TGAGATGTGACATGAAGGATGAAGTAGATGCGCCgagagagagagagagagagagagagagagagagagagagagagaagagTTTGGGGACAAAGGGAGGCAC-CATTCAGGTCAAGGTAAATGTGACTGTGCAAGAGCCTGAAAGAACTGATGAATTTCCTCAAGAACCCAGAGGAAACAGTTGATGGAAACACAGACAGTGAGAGGAAGGAGAG-GGCAGTTTCGACTGGAGTCATCAAATGGAGCCCACAA--GAAAAGCC-CGTGGGTGGTGACAGCTTTTGACTTTTATACTAAATTCAATGGGATGTGACTGA--AGTTTTAACGAGATTAAAACCATGATCGCAATACA-GTTCTCAATCCTTTACCTACGTTTCCAAATTCAGAAATCTCAGAAAACCAGATCTTTCTAAGAATTTTGATGCAGAACCCG-TTGGCAAATCTAATCTGATGAGG---------TAAGGGTCGGTCAGAGCTCTTACTGGTCAGTCACGTGTGCTTCTGTAGTTTCAatatatgtaaacacacacacatcataattcatgtatatatatatgcaaacatgta------tgtatata-ttttgatatttatgt-TTTACGTTTAATTAAATTAAGACAAGTGTTTTATTCAAGTATAATTAACATGAAAATTTTTAAAATATGGAAAAAATAACTGTTTAAAAGGGAGACAAATAAAAGAGAGCATCTCACATTATTAATAGAGTAGATTGTAGAATTAGTACAAAAGTTTGACATATTTTACTAAAAAAATATTTGTGGCAG--TCACAATTTATGACT----------------------------GAGATGGGGCTGATCAAGAAATCATG-AAATACTGAAAAACGTTGCATAAGGCAAAAAATAAAAAACAAAAATCTTGGCTTGCATTGATTGAATTGGCTCAACAAGAAATTGG-TGAATTTACACAATTTTATACTTTATTACTTCTGTATTTAAACAAACTAAAATAAACCACAAAGGCCTGAATTGGAAGGTGAATGTGTGTATAAAGTGTGAGTCAAGAATTTTTAGAAGCCCCACAGTATATAAATCAGTGTTTTTGATCTCAGCATTAACATTTAGAGTTAACATTTTAGAGTTTTTGTCTGATTCTTTGTt a score=19704 s hg19.chr6_ssto_hap7 3863119 607 + 4928567 tctagccttctt---tctct----ccctccacataatttcccacaccagggctttccctcgattcagtctccctggaacttttgtccat--tagatcttcacaactgtctacttactttgt--tgtctcagctgaatgtcactttctcaggtagggctccctaaacatatgaactaaagt-aggtgaatccatttctatctttccgacaaacctgttgtcttttcttcagtgcact-atgactctctaacattttcttttttgttaaatgcttattgggttagtgtctgtctcctctattgttgtgtaatttcct-tgagagtcgggaccctctctatcttactcaaatagaatgatttgaacctagaatggagcccagtacacagtagctgctgagaaaaataAGTGTGGTTTACACGAATAAAC-CAGGGT-ATGAGAACTGATCACTGTGGGGATCCCGGAAAGCAAGAAGGGGCTC-AAGCTCCAGCACCCTTTCATTTTGATGTCACACTAGACCCCTTCTCCTCCCGGTGAGAAATACAGGCAAACTTCTTCTTTCTCCTCCTTCTACTTGGAAGAAGAATTCACAGATAAAGAAACAGTGA-TTTAAGAAAAAGGAAA s canFam2.chr12 5165796 597 + 75515492 Tctagccttcctctgtcttttaaactcagcaaacatcttcccacactttggcctctgtcctgttctctcttccctcaaattcttcacatggtggactttt-----------cttcatcagtcatgtctcaactaaatgtcactttctcagggggagctccctagccacttgcaatgtagtcaggtgaatccagttctctctatttcacaaacctggtgtgtttttctcagagcactgattgctctctgaaattttttcttct-ttaaatgttttttggg-------ctttctactctgtcagtacactaccacttatgatggtagtgat----tttatcttattcaaatagagttcactgagcctagaacagaacccattacaaaataggtgctcagaaaaatatctgtgatttaaacaaataaaCTCAGTGTTCTGAGAATCAGTCACTGTAAGGATCCTGGGAAGTAAAAAGAGGCTTTAAGCTTCAACACTCCTTTATTTTTATGATATATTATTTCCCTTCTACTTCCTGGGTGAAAATCAAACAAACTTCCTCTCTCTCCTACTGTTCT-----AAAAAATATCACGGATAAAGAAAAGTTGGCTTTAAGAAAAAAAAAA a score=79930 s hg19.chr6_ssto_hap7 3864058 2041 + 4928567 TGGATCTCATAGTGCTAAGGATCTGTGCAAGCTTTAGAGATTTTTGGAAATGATGACAACATAGCTGGG---GAAAAGAGAGAAAGTGGAGGAAGAGGTAAGCAGACATGGCTAATTAAGGAAAGCTGAGGGCATGATGGGTGAACCTATGAAATTTAGGAC-AAGACCCCAGTAAGACAATGAGTTTCCAGGACTTGCTCATTGACTTTCAGCCTTATGAGACATGAACAATGTCCACATTGTCTCAAAAACCCCACACAGAGTATAtagtttgaacattattaaatttctgatatttgattatttttgacttacaaaaatagaatttcatacaatttaTACTACATTAGTTAAATCTCTTCTGTCATGTCTAGTTAGAGCACGTAAG--AGATGTAGGAGAAACAAG---TATAGAACGGTTAAAAA-AGATTCATAATAAACACTAACCTGGGCCGGTTTTCCAGAGGATGCCTAAAGTTCTTTAGG-CACCAATGAATACCGCATAAATGCTCTATATCTGTAAGGTGACTCCACGTACTAAAGATCTCAGCTTCAGTTCCACGGATTTTTCCCCATAAGAAAGAAAGA---GCACTAAGTATAACTTTTGTCAGAGAACCTACATAGGCAACAGGGGTACAGGCTTTATAAACATTGGAGTTCAGAAAGAAAAGAAAGGAGATAATGGG-GAGGCCACTGGATCCATCCTCACATATGAGGAAGAGGGGCCAACACCAAAGGTCCTGTGGAGGACATAACACTGGATCGTCTAGGAGAGACCCTTTGAATTCCCTTG-ACTC-CCACAAAATTTTCAGTAAAAACCTCCTTTTGTCTGACATAAGTCAACATAATAAAGGGAAGTGCTGTATGGGGAAATTATTTTAGCATACTTATTTCTAAATCCTCTAAAGACCCTGAGGACATGTGATGCAT--------AGGTTTTATTGGTGGAGATTTGAGAAGAAATGACCTGTGTGTA-----GGCCCTTTACACAAATCTCATGGACAGGACAAGTAGCCAAGCGCCTTTTGTGGTGGAAATAATTTGGGATCCATCTG--ATAAAGATGGGCAATCTCTGAAGAAAGTGTCACAATTTCATAAGAGACATAGCCTGGGCACAATGTTAACAAAACTTCCTATTTTTGCCCCCACCCCATAGTAGCTCTGCAGTCACAATGTGCACTTACGTTGGGTGTCCCCAGCCAAAGCCAGTGGGGAGCTCAGCACCGTCAATGTCACTGTCAGCGCTGCCATACAGGAGCCTCCAGGGAGCTTCAGACACACCATGCTGGAGAAGAGGACAAGACCAGTGGTCACAGCAGCAGGCAAGTCTCAATCAGGGAGAACTATGGCCCCCCTCCACCCACATTCCAAATTATAGGAAGGAAGTTACTGATTTCCTTGCTCCTTGATTGGGTAATCTCGTGTTGGAGAACCAGTCAGCACCTGAGTTCACTAGCATCATCAGTTGCTGGTCAGAGATGCTGTATGAAGGTCCTCCTCTGAAAC---AATTGTCTTC-TTTAAAGGATTGTTTTAATTTAGTACTCAAAAGGTTTGATCCAGTTGCATGTAaaacattttaattgggtccctattgtgagccagctctgagctggTCAGTGATGTGTTCACAAGTTTGAGCCTTGTAAGAGCATTCATTTCCCACTTGACAAGAGAAGTATTTGCAGCAGTG-ACCGTG--TTTAGgagtaaatgagatggagggaacatggttgcaaatgtgcagacctttaatctggtccttattgcaccatatcttaatgtcgtagatttgggaaaattatttcatgtctcacagttgaaatgaaggcaccgtgatcttttaggtctttcaatactggaaaatgctgtgattctgtgGATGCCTCAAGAAGCAGCAGCCCCGGGTATCTGATGATATGACAGAATGACAGCTGTTGACTAGAGAGCTTAATCTGCACCTGTTTACAGGTGGGGATGTCTTTAAT-AAGTTAAAGGAAATGGAA---AGTTAATAATTTAATCTGAGTAAAAGGTTGTTTTCAAGTGTGTCTCCTGATG s canFam2.chr12 5166642 2037 + 75515492 TGTTTGTGATAATGCTGAAGGTCTGTGCGAACACTGGGCATTCTCAGTAATGGTGATGACAGAGTTAGGAAAGAATAGTGACAAACTGGAAGTGGAAGCAACCAAATACGGCTATTTAAGGAAAAA-GAAAACATGATGAATGAATCTATGCAATTTGAGACCAAGACCTCAGTAAGGTAGTAAGTT--CAGTTTTTGCTC-TTGGCTTTCAGTCCTATAAAATGTAAATAACCTTCACTCTTTCT---GTACCTTGCTCAGGGTTTGCAGTTCGAATAC-ATGAAATTCCTGATATTTGACTAATTTTGGCTTTCAAAAACATAATTTCATATAATTTCTCCAATACTAGTTGAACCCCTTCC----TGTGGGCTCAGGGCAAAATGGGAATATGCAGGAGAAAGTGACTCTATAGAAAGGTTCGAAATAGATTCATAATGAAAATTAACCTGTGCCAAGTTCTTGGAAGAGATATTAAGTTCTTTAAGACACCAAAGAACACCCAATATGTGCTTCTTATTTACTGTATTATTTCAAGTACTAAAGATCACTGCTGTAGCTCCAGGG-----------TGAGATATAGAGATAAAAATTAACCCCAACTTTTTTCAGAGAACCTCCA---GTAT--AGGATAAAGGCCTTATAAACTTTGGGGCTCAGGA-GAAAGGAAAGGAGATCATGGGAGAAACCTCTTGATACATTCTCACATATTAGAAAGAGACACCAACATAACTGATCCAATGAAG-ACATAAAACAGGGTCTTCTCAGAGAGAACTTTCTAATTCTTTTTCATTCACCATAAAATTTTCAGAGAAGCTTTCCTACTTTCTAGCATAACTCAACATAATAAAGGGAACTACTTGATGGG--AATTAATTTGGAGTCATTATTTCTAAGTCTTCTCAAGACCCTGATGGAATGAGATGCAAGCCTGAAAAGCTTTTATTGGAGGAGAGTTGAGAAGAAATGGCCTATATATATGAAAGACCCCTTAAGCAACTCTTGTAGA--GGGCAAGCCGGTGAACTCCTTTTGTTCTCAATAGAATTGGGGGTCTATATATAATAAAAATTGGTGGTTATTGAAGAAAATATCACAATTTTCTAAGGGACATAGCCTGGACACAGTGGCAAAACTAATTTCT-TTCTTCCCTCCAACCCATAATATCTTACCACCCAAAGTGTGCACTTACGTGGGGTGTCCCTGGCCCAAGCCAAGGGAGGGTTCAGCACCATCAGTATCAGCATCAGAGCTGTCATCCAGGAGCCTCCAAGAAAACACAGACACACCATGCTGGAAAACAGA--AAGGACAGGGTGCAGGGGAGCAGTCAGGTGTCACTCAGTGAAGACTGGGACCCTACTTTGGCCACATCCTAAATAACACTAACCAAAGAATTCATTTCATTGTCCCTGGATTGGGTAATCTTGGTGATAAGAACCAATCAGCAACAGCAATATATTGCATCATCAGTTGCTGGTCAGAGATTCAGTATGAAGAGCCTCTTCTGAAACTTTGATTTTGTTCATTGAAAGGATTGTTTTAACTTAATACTTTAAAGATTTGATCCAGGTGTATATGAAACATTTT-ATTGGACCCCTATTGTGAGCCAGTTCTGTGCTGGGCAGTGATGTGCACGAAAGTTCGAGCCTTCTAAGAGTATTCATGTCTCTCTTGAAGACAGAATTGTTTTGATCCATGTAATGTGTTTTTaggagctgaggacatggagag----tgattgcaagtcaagaaccctttgctctggaccttgctgcaccatcacttagtgttgtagatttgaggaaaatatttaa--cctTAACCTTGAAATGAAGGCACTGCAATCTTTCTGGTACTTCGATA-TGGAAAGTGATGTGATTCTCTGGACAGCCCAAGGAGCAGCATCTCCTGGTAACTGATGATATAAAAGAATTATGGCTATTGATTGGAGAGTATAGTAT-TACCTCCTTATATGTAGGGAAGTCTCTGGTAAAGCTAAAGGAATTGAAATTCAGTCATTAAATTAACCTGAGTTAAAAGGT-CCTTCAAGTTTATTTCCTGATA a score=22811 s hg19.chr6_ssto_hap7 3866099 502 + 4928567 CTGCCCTCAAGTTTagtggcagctccagaacacacacaggcaaggggcttgcaggggccacctatgtgcaatggaggctc-tgaaggtgcctttgtccagcacttaccctaaaaatgtgataaggtcaactgtgc-aatccaagtattcagggggctgagagatCGATCAAAGACTCAACGTGAGCTGTTGACAGAACAACTCTGttttaaaataattaatattttaCATG----AAGAGTGTTTAATCCCTCATTCCTGGTACCCATTAGGATTTCCTCATTTGACTGAGGCTATGGCCCTTTACTACTGTG---CTTCTCTTGTTTTATCGTAAGGGAAGATATAAGAAGACTGTGCTAACTAATACGTTATAGAATGTTCAGGAAAGAGAGTCCTAGGGAAAAACTATGAATTATATCAGTTGATGTACTCATGTAATTTTAAACATATAATTCTACATTTAGATAATTATTATGCTTTATATTAATATAAATGTGAAATCTGAGATT s canFam2.chr12 5169273 501 + 75515492 CTATCATTGAGTTTGGAGGCATCTCCAGAATATGCATAAGGAAAGGGCTTAGA-ACATGATCTATGTGGAATAGAGGGTCTTGAAAGTTCCTTCATATAGCACTTAACCTAACAAAGTGATAAGGCCAACTGCCCAAATCTACACTTACAGGGAGCTAAGAGATTGATAAAGGACTCAAAGTCAGCTTCTAGCGTAACAGCTCTGCTTTCGGATAATTAATA---TATATGTGGCAAATATGTTCAATCCAT-ACTCCTGGATCCCATTCTGTTTTCCTCATTTTACTGGATATATG-----TTTTTAGTGTGCATCTTCTCTTGCTTTGTTTTAAGGAGACATATAAGAAGCTGGTGCTAATGAATACATTATAGAATGTTCAGGAAATAGAACACAATGGAAATATTATGAATTATATCCTTTGATATAACCATATAATTTTAAACATATATTTCCACTTTTAGaaaattattatacattatattaatataaatGTAATATCTCAGATT a score=10357 s hg19.chr6_ssto_hap7 3866601 266 + 4928567 CAGAATGGACTTCATAGTACAACTATACATGTAAAGTTCTGCATTAATTCACACTCTACCACAGTTCTGATAGGCACTCCTTCCTTATGTGCCTTAGTGTTTCCAGGGGCAGGATTCTCACCATGCTGCAGCAG---------------------AAA---taagcattttactttgtactcagaattgtactaagggctttctatacttcatatgtttatttcattctcacatcagctcagtaaaataaacacccttttcatgcttacaggtggagagaataaagagat s canFam2.chr12 5169983 275 + 75515492 CAGAATGGACTTTAAAGGACAACTATCTATCTAAACTTCTGCATTAATTCACATTCTACCACAG-TCTGATAAACAGTCCTT-----TATGGACTAGTG---ACAAACTATGGAT----ACCATGTTGCAATAACATGACTAATATTTACTAAGCAAATTttgagcattttgctttgcacccag-attataa-aagggctatttatacatcatatttatatttaattctcacatcacctcagtgatttgagtaccctttgcatccttatggatggaaagaataaaatgat a score=10805 s hg19.chr6_ssto_hap7 3866872 304 + 4928567 taaaacaacttttccaaaggtacaaagctagtaaaaggtacactatggagtgagccaaattatct----------acccctcaagctcagccactatatcatactccttcACATTCTATTT---CTGAGAATAATGTTCCTTGTATTAAAATTATTTATATCCCTATAATTTATGGGTGTGCATAGCAATAAGACTACTTCTTTTAATGAATG-GTATCATTACATAATTTGAGAAAGCCACTATGTAGCAATTCTGGTTCCTTCAAAAGAATCCCCTCATCATCATCGACAAGAGGAAGATCCCGTcaaaa--acaaac s canFam2.chr12 5170466 314 + 75515492 taaaaaagctttggcaaggacacaaggcaagtaaatggtgtattccagattgagccaagttatatgtgagtctaaatcccacacgtccaaccattacaccTTACCATCTCACATTTAATTTATGATGAGAATAGTGACCATTATGTTAAAACTATTATTGTCACTTTAATTCATGGTTATGGATGTCTATGTGACTACTCTTTTTAATGAATACAGAACTTTATATAAATTGAGGCAATTCCTCTGTGGTAATTGTAGTTCCTCCCAAAGATTCCTCTCATCACTATC------ATAAACATCTTGTGAAAATGACAAAC a score=7514 s hg19.chr6_ssto_hap7 3870744 191 + 4928567 ACTTGTTCCCATGATTTTATTGTCTCCATGAAATGCTTCTGGAATATACCACATAGAATTCTTTTTCTACTGTGGAATTTTCTGAACATTCTATGGGGACATTTTTCATGTACTTATCGCTTCAAGTTTCTTCAAATAGTAA--------TTTTTCCAAAATACTATACTATTTTTGATGGTTCTTTGGTGAATTTTCT s canFam2.chr12 5141552 196 + 75515492 ATTTTCTACCATCATTTTAATATCACCATGCAATGCCTCTGGAATAGACCCCATAGGATCTTTTCTCTACTACGGAACCTTGTGAATGTTCGAAACAGATATCTCTTCTACACTTAGTGCTTT-GGTTTCTTCAAATTGTGATTGTGATTTTTTTTTAACACAATAAACTA--TTTGATGGATCTGAGATGAAGTTTTT a score=3056 s hg19.chr6_ssto_hap7 3870968 67 + 4928567 CTGCAGGATTTGTGTGATCCCTTCATCCTGAATAGTCTGAATGTTGAATGTATCATATAAGGTCTGT s canFam2.chr12 5141774 67 + 75515492 CAAAGGAATATATGTGATCCTTTCATTCTGAAATTTGTGAATGTTGAATGTATGTGATAAGTTCTAT a score=935 s hg19.chr6_ssto_hap7 3871051 14 + 4928567 AGATAGTCAGAAAT s canFam2.chr12 5141841 14 + 75515492 AAGCAGTCAGAAAT a score=26174 s hg19.chr6_ssto_hap7 3871745 749 + 4928567 AGAAATATCCAGGCTCATTG-GGCTTGGTCTATTTCTGAGCAAGTGCAGGCAATTCTGTTGCTGTGGTCTAGTCCTCAGCAGGACAATGCTAAAGTAAGGTTTGTTTGTTGGGAGATCTCTATTGGGCAATCGGTTCAGAATCAGTTTTTAGTTCTTCAGCCTGCAAGTCAAAGACATGTCTGTATCTTCAGTGTAGTGAATCTGAAACCCTGGGATTTGGCCTCTGAGAATGGGTGAGACAGATGGAGAGGAGGAGATAGGGGGTAGACTGTGGAGCAGAATG-AGAAGAAGACCCACAAATATTACAAGATTTACATATCAGCATTTCTCATTCCAGACTTAAAGAGGAATGAGATTAGACACTGCAGACTGACATTGCCTGTTCCTTTAGAAAAAGCCTTGGATGCCTGTTTTATTACCAGGAGAACAGTCTGACTTATTACTGAAACCATCATATATTTGGACATATGTATTTGGGTGGAAAAACTGAGTAA-----TGGGAGCAGTGGCAGGATACGGCATTAAGATGAG--AAGAAAATATTAGAAAAACAGTGAGCTATTGCTCATTTGTCTGTAAAAGTATGA--TGATACTTATTTCTAAAATGGTTACTAGAACCTACCACAAACCATAAAGGTGAATTATCAATGACAGTGAGATAGACT-GCAAAT---AAACGTTGagtta-----gatttggatttcatctgggctgtatcatatactaggtatgttttcacttgtatcctacttatcttagcct s canFam2.chr12 5142048 748 + 75515492 AGGAATATCCAGGTTCATTATGACCATGTCTCATTCACAGCATCTGCAAGTAATCCAGTTGCTATGGTCCAGTCCCTCTATGGAAAACTCTAGAGTAGAGTTTGTTTGTTGAGAGATCTCTGCTTAGGAATGATTTCAGAATCTAGTTTTGGTTCCTGA-TTTCCAAGTCAGTGATACATGTGGATCTTTAGTAGAATGAATGTTAAAGCATAGGGTTTAGCCGCAGCTAATAGGCAAGACTGATGATGGGGAGCAGATGAGA--------GTGGAGTGGAAAACAGAGGAGGATTTAC--ATGTTACAGGATTTACATATCAA----TGACACTCCAGATTTAACGGAAAATAGGATAGGACACTGTGGATCAGCATTACCCATTTTATTA-ACATGGTCTTTGATGCCTGTGTCATTACTAGATAAATGGTCTGACTTATTCCTGAAACAATCTTGTA-TTGGATATGTATCCCCGTGCAGAAAAATCAAGTAAAAAGTGGAAAGTTGGGGGAAAACATGACATTAAAATAGAGTGAAAAAATGTTTGAGATACAGTGAGCTCTTGCTTACTTCTCTGTGAAACTATTACTTGAAATTTATTTCT-AACTAGTTACCAGAGCCTACCCCAAACCATAAAGATCAATTATC-CTgatagtttgatagagtagcaaataccagatgttgaattgacgtcaacttgggcttcatct-tactctat-atttactagctgtgtattcactgataccttgcttaactcaactt a score=11546 s hg19.chr6_ssto_hap7 3872695 427 + 4928567 ACCTTGTAAGACTTACTAATAAATAACACGTTTCTCTAC-CTATGGTTTATAGAATCCAAGCAGAATTTTGAGAATGTTAGAGATAGAATCGGCATACATATTT-TGTAACATATCtataattttaatataaaataaGTAGATGAGCAATACAGAATGCAGTCAAATGCAGACAAATATGGAATAAAAAAGCAAAAATAAATCTATATCATTCCATGTAACAAGACCAtttttaa-----------------agtagtttaaagtgtagagaaaaattgcggagaaatttcagggac---------ttcccacatcccttcttccctaaaacagccctctgctcaatttctcctattattaacatcctgcatcagtgtggtacgcttg---ttac--aaatgatgaaccaatactgatac-tta-cgttaactgaggtccatagttga-attagggttcattc s canFam2.chr12 5144099 441 + 75515492 ACCTTAAAGGACTTACTAAAAACTAGCAAGTTTCTGTATTCTGTGGCTTAAAGAATCAAGGCACATCTTTAGAAATTTGAAA------ATAGTCATAGGTGTTTCTTTTATGTAACTCCCATTTTT---TACCATAAATAGGTG-GCAATAGAGAATACACTAAAACTCAGACATATGTGGCATAAAAAAGAAA----ACATCTACAACCTCCCATATAAAAAGACATTTTTTGAATactttacctttaatgagcagttttaggttcacagaaaaattgggcacaaaatacaagagttcctgaatatccccatctttccccctccctg--------ctccatacagtttctcccattattgacacttggcagcagggtggtacatttgatcttaccacactgatgaatcaacattgatacattattatttacagatgtctatagtttagaatagggttcgttc a score=11073 s hg19.chr6_ssto_hap7 3873683 468 + 4928567 ttttgctgacctaaaattgtcccaggctccacctactcattcatttctcttcctcctgaacccctggaaaccactatttactgtctctgtatttttgccttttccagaatgttatatagttgtaatcatatgggatatagttttttttagactggc----ttctttcacttaacgatatgcgtataggttttcttcatgtctgttcatagcttgatagcttatttctctgtaattttaaataataacccatgatatggatctaccacaatttgtttatccactcacttactggaggacatcttggttgctttgaatttttggcaattatgaataaagctgctataaacatcggtgtacacttgtttgtgtggacaga-attttccactaatttgggtaatacttaggattgcaattgctgaa-tcttatggcagagtatgtttagctttgtaagaaacagccagagtgtcttTc s canFam2.chr12 5144540 381 + 75515492 tttgtatgatataaa--------------------------------------------------------------------tctctata-gtttgccttttccagaatgtcatatagttgaaatcatacagtg---agagctttttagtctaacatgattctttcatgtagcaatatgcatttaag--gtcaccatgtcttttcaaagcttaatagcttttttc---aaattgctgaataatacttcattgtatggacgttccaca----gtttatcaatccacctgtcaaaggacatcttggttgtttccaagtttc-----------acaaagatgctataaacattcctgtgccagtttttgtggggacatatattttcaactcattgagtaaataccaaggaaaac-attgctggactgtaatataggagcatgtttagctttgtaagaaatcaccacagtgtttctt a score=1742 s hg19.chr6_ssto_hap7 3879731 109 + 4928567 tttatagtagagctcttatagttgattatactttctagat-------------------aatgtattcttggtaatatatgtggt-tttaaatattttctccatatttctagcttacttttc---------------atttttt s canFam2.chr12 5145980 144 + 75515492 tttactgtggagacttgggagttctttattgattctagaCAtatttgttatgtttgttaaatttgctctttgttatattttggatgtttagatattttgtctttgtctatatctaaccttttcagtctctcaaaaggatttttt a score=2821 s hg19.chr6_ssto_hap7 3879840 57 + 4928567 agcaggataccttacagaaaaacagttttaaattttgataaagctccatctattgat s canFam2.chr12 5146362 57 + 75515492 aataggatatttttcagaataaaagtatttaatttttataaggcccaattcattgat a score=1290 s hg19.chr6_ssto_hap7 3880118 112 + 4928567 ttttgttttttacacatagcgcttttggtgtcatgtctatgaactcagaacacagacaccaggccctagctcctgatgattttctcatatgttttttctaaatctttaacat s canFam2.chr12 5146419 95 + 75515492 gtttctcctttatggatcatgcctttgatgttctgtctaagtagtc--------ttcaccag---------cccaaaaatttcctgctgttttcttctgaaaattttaCACt a score=3187 s hg19.chr6_ssto_hap7 3880254 194 + 4928567 aatgttttcataagatgtgagaatttgttaagtctctttcttgtgtctttttccttttgcttc--cttttttattttgtttggttttggtttgtctatggatttccacttt--------------------ctcctggaccatattttgaaaagactacagactatattacctccattgaattattatgattctttgtgaa-aatgagttggcatag s canFam2.chr12 5146641 178 + 75515492 AATTTTTTCCT-----------------------TTCCTTTTGTTTTCTTTTCCCTTTGATTTTGCTTGTTTGCTTTGTT---------TTTGTCTATGGATATCTAttttgtctatggatatgaaatgtgttccaacaccattgtttgaaaagattatg---cata----ctccattgatttgcactgcacccttgtcaatagtgagttggtgtgg a score=1093 s hg19.chr6_ssto_hap7 3887758 27 + 4928567 TAAAAAATAAAGAATCAGTAACAAATG s canFam2.chr12 5152623 27 + 75515492 TAACCAATAAGGAATCAATCCCAAAGA a score=27382 s hg19.chr6_ssto_hap7 3888094 975 + 4928567 GTATTTTTAAAAATAAATGTATAGTATGTTTTAGCACCTTATAGAGCTAGTCATTCCTTATTCT----ACTTTTTTCAAAAAT------TTCCCTGTAAAAACAACATGTCAGCATACCTAATTGAGTTCTAAAATCAA----TCCTTTCTCCT---TGCTTTTTTGTTTTATTCTAATTGAGTTAATGGCAGACATTTAATGCTCAATACATATGTATTAAAAAAGA---CCCAAAACGCTGAATGGAGGGTGCCTATCAGGAATCTCTAGGCCTTCATG-TGAAATTTAACTACAAATACTAACAACCTAAGAGTACCACAATCTATCATTTCCCTACTCTGAAATCAACCTCTCCTACTCCATCCACCATTTCTTTATTTTT-----AAAAATATATGATTTTGCTCCTTTTCTCCCCATGTGCT---TCAGGCCCACTCTACAAAGCCAGGTTGAATCCTGGCTTGTCTGAGTCTG----TGTGATCCCACGGTCATTCCAGTG-----AGAAAGTGG--TTACTGAGAACACTCTGAAACAGTGTAGttgctccttataaaggcacacaggaaagaaggagtatccttttctcgcctttgggagttgttgttagagaataagaaacctaaagctgctgcagggatcctccgaccatctcaggaaagctgac--gtgctgtgtgatagagagatgagctatgaagttccaggatcgctggtgatgccaccagcatgatgagttgagcaaccctggagatgcccagccttggatgtattggctatgtgagataatGGGTTAAAG-AAAATAAAGCCCACTACATGGGATTTCTTGTTATTCGCAGCAGAA-GCATCTTCATTCAAATATTCATCCCACACATTTTAGTTCTACA-------------CCACAAGTCTCATATAAAATGAGACAAATCATGTCCTCAACTTAGGGAACAAGGCCTATTT---GTTGCAACTCTGGGATCAAACAGAAC------------------------AGACATAATTATCAGCTTAATATATTCCTATAGGA s canFam2.chr12 5152650 1019 + 75515492 GTGTCAAGCAAAATTGATATATAACAGGTTTAAGCATTTTATCAAACTTAACACTTATTGTCTTTGAAAATTTTCTGGGAAATATATTTTTCCTTATAAAATTAA-GTATTAACATG-----TTAACTTCTAAGAACAAATAGTCCTTTTGCTTAGTTGCTGTTTTTTTTCATTATAATTGGGTTTATAACTGCATTTTAATACTC--------CGTGTTAAAAACAAACCCTCAAAACCTTTATTGATGCACCCCTC-----AACCTATCATCCTTCATGATGAAAT--AATTAAAAATACTAACACTCTAATAGTTCCAGATACTATAGTTTCCTTAC-CTAAAATTGTTCTCTTCTACCCGCTCTCACATTTCTTTCTTTCTTTCTGAAGATTAT------TTGCTCCCATCTTTCCAATGCATCAAATGAGGCAGGCCCCACAAAGCA----TGAAGCATAGTTTGTCTGAGACTACCACTGTCATTCTGTGGTCCTCTCAATGTGTGGAGGAAGTAGgtctactgagaacacttgaagaaggtttagttctcccttataaaaatgtatgagga-gaaactgttcccttttcctgtctttggaagttat----gaagaaaatgaagcctaaagctactgcagccatcctactaccatTTCAGGAATACTGACTTGTGGTGTATGATAAAGAGAAGAGATACAAAGTCCCAGGATCACTAGCAACACCATTGGCCTGATGAACTCACCAGCT-TGGAGGTTAACTACCCAGGGTCTATCTGCTACGTGAGACAAGGAGTTAAAGTCAAATAAAGCCAATTAAATTGA--TTTTTCTCACTAGCAATAGAAAGCATCGCCACTGAAATATTCCTGCCATACTTTTAAATTCTACATTATAATGTCACACCATAGATCTCAGATAAAATGAGACAACTCATTTCTGCATCTTAAAGAACACAACAAAAGTAAAGTTGCAACCCTGGGATCAAACAGCATCTGATTAAACCATATAAATATTGAACACATGACTGTTAGCTTATTAAATTCCCACAGGA a score=9686 s hg19.chr6_ssto_hap7 3889120 298 + 4928567 TAACATATAACTTAAAATAAAATATGCATAAAATAAATATTGAATTTGATTGAAAATAAGTTGTCTCTGACAGTAGAGAAATTGTGCTGAAATGGTTATTACTTTGAAATAGACTTCTGCATTGATTATGTACTTTTTAGATTTGACATA--TATGAGACTGACTCT----CAGAACACAATGG-AGAACCCTCCATCTTCTAAATTTGTCT-------TTCTCTGAAATCTGTACAAGTCCTTCGGTAATACTATATTACTGAAGTCTCTGGAATGAAAAACCATATACTAATAGATACACAATATTGTAG s canFam2.chr12 5153689 288 + 75515492 TAATGCATAA-TAGAACTATAATATTTGTAAAATAAACTTTGAATTGGTCTG--------TTGTCTCTTATAGTGGAGAAATTGTGCTGAAATAGCTATTAACTTGAATTGAACTTCTGAATCTATTGTCTACTCTTTAGATTTGATTTACTTTTCAAAATGACTTGTCGACAGATTATGATAGCAGAACTCATCATCTCCTTAACCAATTTAGGTGTATTCTCTGAAACCTTTCCAACTTTTT---------TATATTATTGAAGTCTATGGAATCTAGAACTATATACTGATTTACA------ATTATAG a score=2572 s hg19.chr6_ssto_hap7 3889763 130 + 4928567 TTGCTAGCTGGTTTC--TCATCTCAGGTTGGCCACGTTTTTTTTCGGTTGTTACAGTCTCTTCTCAGTTTTTAAGCATTGCCTTTGTAAATGTTAGGTTTACttttttaattgacaagtaaaaattttatag s canFam2.chr12 5154015 119 + 75515492 TTTCTAATTTGTTTCCATTATGTACTTTTTGTCACATTTTCTTC--ATCACTACAGTTTGGTTTTAATTTTTACATATTGACtttttaaat-----------tttttaagttattatataaaatGTTTTTAG a score=3702 s hg19.chr6_ssto_hap7 3889948 166 + 4928567 aaatcaagctatttaacatatgcattacctcacttacttatgacttATACACGAAAACCATTATTCTACTGGGAAATAAtcttc---tctttttcttttctttttttttctttG-------TCCTTGGAGCCAAATGGAACAGATGATTTTTT-TCCACTTTCTTTttattattatt s canFam2.chr12 5155174 177 + 75515492 AAGCAAGGATATCTTTCAGATGCATATCTGAACAAAATTTAGGAATATCAATAAAAACCATTATTTTTTTGTGATGAATCCTCCCATTCTCCCTCTTTTTTTTTTTTTTTTTTACTTCTCTTCCTTGAAAACACATGAAGCAGATGATTTTCAATCCACATTTATTTGAGAAAAGTT a score=868 s hg19.chr6_ssto_hap7 3896767 49 + 4928567 agagaatcctaaaagcagccaaagaaaagcgtacattgcctgcagggaa s canFam2.chr12 5155388 49 + 75515492 AGGGAAACATAAGGGCTGCATAGGAAGAGGAAGGAGAGAATGCAGATAA a score=10255 s hg19.chr6_ssto_hap7 3896966 249 + 4928567 aAAAAAAAGAGCCAAGCGGAAAAGCTTTTCCTCCTGCAAAG---CTGGGGCAGAAGTTTCCTCCTTGAATGTGGTCATCTTCACTTCAGTTCAGGAGTCCTGCAGAAGACACAGGAGAGTGTTGTTTTCAGACATGGCTCTACTAACAGCTTCTTTCCCCCTCTTTCAGGGACTCAGATGAAAGCAGTACAGGAAGAAGAAAAACAAGTTGCTAAGTCTCCCTGAGCCAATACTACTGCAGAGCACTGGCCt s canFam2.chr12 5155564 245 + 75515492 AAGAATAAGAGCCAAGCTGGAAACCTTTGGACTCTGAGAAGAAGCTGGAAAGGAAGGTTTTTTCTTGAGGGTCACCATCTCCACTTCAGCTCAGGAGTCCTGCAGAAGACAGAGCAGAGTATTGTTC-CAGACCCACCTCTATAAGCAGCTTCTTCTCCTCTCTCTCAAGGCCTCATGTCAAAGCGCTGCAGTAATTA------CATATTTTTAGGTCTCCTTGGGCCAGAGCTATTTTACAGCGCAGGCCT a score=1912 s hg19.chr6_ssto_hap7 3897530 54 + 4928567 TTTTCTAAGTAGAGAGGAGT---TTTGGCGTAAATTGCCTGATCAGAAATTTGGATC s canFam2.chr12 5155809 57 + 75515492 TTCACTAAGTGGAGAGAGGTAGCGTCAGTATAAACTGCCAGATCAGAAGTCAGATCC a score=8653 s hg19.chr6_ssto_hap7 3897584 166 + 4928567 CAAAGTCTTTCCTATTATTTCTGTCTCATCCCTTATCACCTCTACCATC-ATTCTAGGA-AAGCGAATCTGTTTCTAAAAGAGAATGAAAAGGTATTACCTGTTGGCTGAAGTCCAGAGTGTCCTGGGAAAAAGGGGAAAAGATACACATTTAAAAGATATGGAAGCA s canFam2.chr12 5156074 160 + 75515492 CAAAGTCTTTCCCATTATTTCTGTCT-------TTTCACCTTTACTATCTGCTCCAGGATAACCAAATCTATCTGTAAAGGGGA-TGAAGGAGCATTACCTGTTGGCTGAAGTCCAGAGTGTCCTGGAAAAGAGAAGGGAAGACATAGACTTAACAGATATGGAGGTA a score=71533 s hg19.chr6_ssto_hap7 3898063 1674 + 4928567 AATCTGTCCTCCAACACAATATCCCAGCCCCAGATCTCCCACCTGAGATTTCTCTAACACCACAAC-----TTACATGA-ACCAGGGCAGAGAGGAGCAGAAACTCACCACGTGACCCCTGAAGCGTGAAGTGTCTGTCATA-GGATCCAGTGTAATTGTATTAACCTTAGTGGCTCTTCCTTAATTTGCTCCAGGATCTCCAACCAAAGGATCCCTACTTGTTAGCCTTTCTTTTCTCTCTGCAGGCCATAAG--CTATTATGCTTTGACATAGTAACCATGCACTGATGATTTCTGGATTAGCGGGACATTGGAGGTCGTTTTGGGAAAGAAAGGCTTTATCCAGGGCCACTCATATACTGAGAACTAACCTCTG--CAAAGCCATATTTCCTCCTCCAGAAAAGTCTATGGAGAGAGCCAGCTACGAA-AGGTTCCTCACCTTTCTGATTCCTGAAGTAGAGAAACAGCCCGGCCCCAAGGAAGAGCAGGCCCAGCACAAAGCCCCCGACTCCACTCAGCATCTTGCTCTGTGCAGATTCAGACCATGCTCCTGAGAGTGGAAGCCAGGTTTAGTGATTTTTATCCCAAATTGA--ACCTCTGTAATTGAGA------------------------------------TACTGAGATTCAGAGCTTTGAAAATGGGGAAG-AAGGCTGCCCTGCAAGAACTAAAATAACTAGCTATTTCTGGGGAAAAAAGGTTTTCAGATCACACTGAACAGTTACAAGGT-TAGGCCTCAAACTCATTCAAATATTACAGCCTTGATGTAAGGCATGACTTTGACATCTGATCCACAgaaatcctgagactcaaagaggttta-gtagtttgtctagagtgacagagctaataaaaggcagagctgggattggactccCCTCATGCCAGGAAGACCCCTACAGT-TCTCCTCTTCTCAGATCACAACAAACAACCCAGAGCAACAGCAGCAGAAATACAATCTCAGACCCAGAGGCAG-GGCCTGGAGCC-AGGGAGAGTGGGTGACCCTGACCTGTGCCATCATGGGGAGGTTCAAAAGAGAGACAGCCTC--TCCCGCCTGGCAGGCATGACTGCTTTACCATGGGGTACAGGTGCTTTTAGAAATGATTACAGG------------------------------GCTATCCCCAGTGACCTGTGCTGATGGAGATGAGAATATGGAGCAAATGAAAATAGGATGTGGGAGAGGAGAAACCTGACACTCAGGGATTAGCACAGTCCTGTACTTACTGGGTGAAAAATTTATGAAGTCAGAAAGCTGCTAACTCCATTGCACCGTGAGAGGGCTCATCATGCTTGGATGCTCCACTTGGCAGGTGTAAACCTCTCCACTCTGAGGAACTGTTTCCAGCATCATCAGTGTCTGGAAGGTCCAGTCTCCATTCTGGATCAGGCCTGTGGACACCACCCCAGCCTTCTCTTCCTGGCCGTTCCGGAACCACCTGACTTCAATGCTGGCTGGACAGAAACCACTCACAGAGCAGACCAGGAGGTTGTGGTGCTGCAGGGGCTGGGTCTTTAAAGGATACACAGTCACCTTAGGATGGACTAGAAGAAAAAATGTAGAGGGAATGAGTCATGAAGACAG----AGTAAGTCTCCTTGTTTGGCTGTTTTGTTTGTCTGCTTC---TCTGTAAACCTAGGCTCTGGCCTTGACCAGGCCTCCAGCACAGCTGGCCATGTGGCCTCA-------CAGTGTCATCAGC s canFam2.chr12 5156234 1729 + 75515492 AATCTGGCCCCATAGACAAGATTCCAGCCCCAGACCTGCCTCCTTAGATTTCTCTAACAGCCCAACCCATATTGCATGATGCCAGGGGAGAGTGGA----AAGTGAAAGATATGACCC-------ATGAAGTCTCTGTCACACAAATCCAGTTT-----CATTAGCTTTAGCGTCTCTTCCTGCATTTGGCCCAGGATCTCAACCCAAGATCCTCATGCTTGTTAATCTCCTTCTTAGCTCTACAGAACACATGACCTCTTAGGCTGTGACACAGTAACCATGGACTGCTGACTTCTGGATTTCTAGGGAATCTGAGGTCAAATTGGGAAAGAATGGCTTTATACAGGGCCATCGGTACACAGAGAGCT----TTTGATCAAAGCTGTATTTCTCTCCACATA---GTCTCTGGGGAGTCTCAGTTACCAACAGGTGCCTTACCCTTCTGATTTCTGAAGTAGATGAACAGCCCCACTGCAAGGAAGAGCAGACCCAGGACAAAGCCCCCGATTCCACTCAGCATCTTGCTCTGTGCAGAATCAGACTGTGCCCCTGAAAGAAGAAGC-AGTTTTAGTGCTTTTTACACCAAACTGATGGACACTGGGATTGAGAATGTCACTTTAGTGATTTTTACACCAAACTGATGGACACTCAGTTTGAGAACTTTGAGAATGAGGAAGGAAGGCTGCCTTGGAAGAAGTAGAATAATTAGCAATTTCTGGAAAAGAAA---TCTAAAATCACATTGAGTAGATACGAAGTCTATGCATTGACCTT-TTTAAATATCACAATTCTGACA-AATCCACTACTTCAACAtct-atggatgaggagcctgggactccgtgaagtacaagtagcttgtgcagggtgacagagctaataaaagg--aatccaagattggattccCCTCAAGTCAGAAAGGTCCCTACAATGTAAAGGATTCTCAGATGACAATGAAGAACTCAGAGCAACAGTGCCAGAAGCACAAGCCCAG--CCAAAGGCAGTGGACTGGTGCCCAGTGTCAAGATGGAACTCTGACCTGTGA-ACCATGGAAAATCTGAAAACATGGATAACCTCCTTTCTGCCTGCCACATCTAACTGCCTCCCCAAAGACTGCAGG-ATCTGTAGAAATAATCACAGGATATCTTAAATTATCAGAGGACATCACTCAGCTACCCCCAGGGACCTGTGCTAA-ACAGAAGAGAATACGGAGGAAAAGAAAATATGGTATAAGGAGAGAGAACCCTGACACTCAGAAATAAGCA-AATCCCCTCTTTGGTAGTTGAGGAACTTATG---TCAGGAAGCTTCTCACTCCATTCCACGGTGACAGGGCTTGTCAAACTTGGGTGCTCCACTTGGCAGGTGTAGACCTCTCCGCTCTGAGGAACTATCTCCAGCATCACCAGGATCTGGAAGGTCCAGTCTCCATTACGGATTAGGCCTGTGGACACAACCCCAGCTTCCTCTTCCTGGCCATTCCGGAGCCACCTGACTTCAATGTGGCCTGGATAGAAACCATTCACAGAGCAGACCAGGAGGTTGTGATGCTGCAAGGTCTGAGTCTTCGTAGGATACACAGTCACTGTAGGCTCGACTAGAAGAGAAGTGGTAGAGGGACTCAGTGAGGAAGACAGACAAAGCAAGTCTCCCTGGTTGGCTGCCTTG-----CTGCCTCCAGTCTCTGGTCACAGGCTGC-ATTTCAAGCAGGCTTCCCTCAAAACTGACCATGTGGCCCAATAAGGGCCAGTGTCATGAGC a score=12480 s hg19.chr6_ssto_hap7 3899737 347 + 4928567 CTGGAGTTTAATCTTTATAGTGGGGACCCATTAGATTTGAGAGATGTTGTGATAAATTAT---GTTTGTTTCTTCATAGCTTGAAATTGGCATGCATTG--TCAAAGTGTTTACAAATCTTTGAAAGTACacagtgta-ttaattaaaa--ctgatttctaagccaggttgcct-ggttcacatccaagttctgcc-ttttactggttgatcctggaagagtttttccattcttctgtgtctcaacattcttacctataatggaggataattatactaatttacctcttgagattatgtgaggattaatgcacgtacaatatataaaacaatgact-TAAGATAGTCTTCCTTTTATG s canFam2.chr12 5158189 356 + 75515492 CTTGAATTTAATCCTGACTGCATGAGTCCATTAGATTTAAGTGATGTTGCAGAAATTTGTGGGGTTTGTTT-TTCATAGAGTGAAACAGTTTCTTGTTGAATTGAGGTGTTTACAAATTTTGCAAGGCATATAATGTATTTAAGtaaaagcatgatttctagagaagcctgactaaattcacgtccagactctattactttactgattcatcctgggagaatttttacattcttctgtgccccagctttttaacctatcaaggaggatagtaatactaacttagctctcaaggttacatga-tactaatgcacccgaggtatataaaacaataactggaatttagctttcaatatatg a score=4927 s hg19.chr6_ssto_hap7 3900084 66 + 4928567 AGGTCAGAAAGCTTCTCACTCCATTCCACTGTG--AGGGCTCATCACACTTGGGTACTCCACTTGGCA s canFam2.chr12 70151604 68 - 75515492 AGGTCAGAAAGCTTCTCACTCCATTCCATGGTGACAGGGCTTATCGAACTTGGGTGCTCCACTTGGCA a score=29403 s hg19.chr6_ssto_hap7 3900681 674 + 4928567 taaaacaatttttgcaaagatacaaatctagtaaatggtacactatagattgaaccAAATTATAT----------ACCCCTCAAGCTCAGTCACTATATCATACTCCTTCACATTCTATTTCTGA---GAATAATGTCCCTTGTATTAAAATTATTTATATCCCTTTAATTTATGGATATGCATAGCAATAAGACTACTTCTTTTAATGAATG-GCAGCATTATACAATTTGAGGAAGATGCTGTGTAGCAATTGTAGTTCCTTCAAAAGATTCCCCTCATCATCATTATTAGCCTCCTCTGGAAAATGACAAGATTTGCATTTGTCTTATGTGATGACACCCATAGCTCCTGAGAAGTCTCCTTCTTATTAAAGGTAACAGTGGCCTCAAAATTCCTAAATATAAACTATTGCTCAGAATTATTATTGCAGATTTCTCATCATAAAGTAGTA--AATTTGACCATCTCAAAACAGAAGAAAAAACATGCCTTATTTACTTTGGAAAAATACACTTCTATTAGTACAGAAAGTTCAAAATTTCTTG---------GGTAAAAGTAACTATTGTCCCTGGATTTGAGAATAAACTATGTCTCTGTACCCCAATAATAATTCAGTACTATTGGAAGTTGTGCAGTTGCAACCAGAAGA---TCACATTTAATTTGGTCAACAGAAAATAATAATTTACTTAGAA s canFam2.chr12 5170466 698 + 75515492 taaaaaagctttggcaaggacacaaggcaagtaaatggtgtattccagattgagccaagttatatgtgagtctaaatcccacacgtccaaccattacaccTTACCATCTCACATTTAATTTATGATGAGAATAGTGACCATTATGTTAAAACTATTATTGTCACTTTAATTCATGGTTATGGATGTCTATGTGACTACTCTTTTTAATGAATACAGAACTTTATATAAATTGAGGCAATTCCTCTGTGGTAATTGTAGTTCCTCCCAAAGATTCCTCTCATCACTATCATAAACATCTTGTG-AAAATGACAAACCATGCATTTATCTTATGCAATGGCTCCCAAAGCTCCTGCAAA-TGTCCTTCTTATTAAAAATAACAGTGGC-TCCAAATTACTAAATAAAATCTATTGTTCTCAATCATAATTTCAAATTTCTCAGCATGATTTATTACAAATTTAAATAAGTCAAGAATAGATAGAAATTTTATCTCATATAGTTTGGAAAAATGTATTTCTGCTAATGAGGAAACTTCAAAGTATCTTGTACAAGTGGGATAAAAGTCATTGTTGTCCCTGGATTTCAGAAGAAAGTATGTTCCTAGACCCCAGTTTTAATTCAGTTCTATTGTAAGTTGTACAATTGCAACCAGGAGAATGCCatatttaattttagaaat-taaaataataatttaCTCCAAA a score=26651 s hg19.chr6_ssto_hap7 3905259 744 + 4928567 AGAAATATCCAGGCTTATTG-GGCTTGGTCTATTTCTGAGCATGTGCAGGCAATTCTGTTGCTGTGGTCTAGTCCTCAGCAGGACAACGCTAAAGTAGGGTTTGTTTGTTGGGAGATCTCTACTGGGCAAGGGGCTCAGAATCAGTTTTTGGTTCTTGAGGCTGCAAGTCAATGACATGTCTGTATCTTCAGTAGAGTGAATCTGAAACCCCGGGGTTTGGCCTCTGAGAATTGGTGAGACAGATGGAGAGGAGGAGATAGGGGTTAGACTGGGGAGCAGAATGAGAAGAGGACCCACAAATGTTACAATATTTACATATCAGCATTTCTCACTCCAAACTTAATGAGGACTGAGATCAGACACTGAATATTAACACTGTCTGTTCTTTAAGAAAAAGCCTTGGATGCCTGTTTTATTACCAG---AATAGTCTGACTCATTATTGAAACCATCATATATTTGGATGTGTAT--TTGGGTAGAAAACCTGAGTAA-----TGGGAGCAGTGGCAGGACACAGCATTAAGATGAG--AAGAAAATATTAGAAACACAGTGAGCCCTTGCTAATTTGTCTGTAAATGTATGA--TGATATTTATTTCTAAAATGGTTATGAAAATCTACCACAAACCATAAAGATGAATTATCCATgacagtgtgatagact-gcaaat---aaatattgagtta-----gatttggattccatctgggctgtataatttactagctatgtttccaatggtatcttgcctaccttagcct s canFam2.chr12 5142048 748 + 75515492 AGGAATATCCAGGTTCATTATGACCATGTCTCATTCACAGCATCTGCAAGTAATCCAGTTGCTATGGTCCAGTCCCTCTATGGAAAACTCTAGAGTAGAGTTTGTTTGTTGAGAGATCTCTGCTTAGGAATGATTTCAGAATCTAGTTTTGGTTCCTGA-TTTCCAAGTCAGTGATACATGTGGATCTTTAGTAGAATGAATGTTAAAGCATAGGGTTTAGCCGCAGCTAATAGGCAAGACTGATGATGGGGAGCAGATGAGAG-TGGAGTGGAAAAC------AGAGGAGGATTTAC--ATGTTACAGGATTTACATATCAA----TGACACTCCAGATTTAACGGAAAATAGGATAGGACACTGTGGATCAGCATTACCCATTTTATTA-ACATGGTCTTTGATGCCTGTGTCATTACTAGATAAATGGTCTGACTTATTCCTGAAACAATCTTGTA-TTGGATATGTATCCCCGTGCAGAAAAATCAAGTAAAAAGTGGAAAGTTGGGGGAAAACATGACATTAAAATAGAGTGAAAAAATGTTTGAGATACAGTGAGCTCTTGCTTACTTCTCTGTGAAACTATTACTTGAAATTTATTTCT-AACTAGTTACCAGAGCCTACCCCAAACCATAAAGATCAATTATCC-Tgatagtttgatagagtagcaaataccagatgttgaattgacgtcaacttgggcttcatct-tactctat-atttactagctgtgtattcactgataccttgcttaactcaactt a score=22557 s hg19.chr6_ssto_hap7 3929085 510 + 4928567 ATTTCTTTAATTTTTTTTTTTCAGGGGGAGAAAATTAAACCTCATTTATTTTT-AAAACCAAACCACTAGGAAAATATATCACAGCCTGGA-----CCAGTAAATTGAAAGGCTATGTTATCATTTCAAGTAATAAGTTGGTGAAAATACAATGAGGTTGCTATCAAAACAATAAGTTGCCAT-GCCAGGGCAGGAACAGTGCAAGTTGTGAAAGCCCCAGGCAAA--ATGGTATTTGGTAAT------CAGGGCT-CCTCTCCTTTGCTCTAAGGGAGT--CAGCTCATACTAGCCCAAATTACTTACTTTTTCTCCCTTGAATTTCCTTTTGCCAGGGGTTTGTCTCAATTGAGCTCTGTTAATTCAGAAGGCTAAGTAGGCAATGCTAGATTTAGGCTTTTATTCCA-TCTGTTCTATAAAAACCAGATTTTTCCAAAGCTAGTACTTCATAACTCTGTTATAATCAAGTAGCCAACTGCTCCTCTTTTACTGTTCATTCCTAGATACTAGTATATATCACAATTA s canFam2.chr4 90964851 514 + 91483860 atttttttattttttattttt--GGAGGAAAAAACTAAACCTTATTTATTTTTTAAAACTGAACCACTAGGAAAATAGATCACAGCCTTGAGACACCCAACGCA------GACTATATCATCATTTCAAGTAGTAAGTTGGTAAAAAGACAGTAAGGTCTTTATCAAAATGAAAAGGTGCTAGAGCTGGGGCAGGAACACGGCTTGCTGCAAAGGTCCTGGGGCAAGGGTGGCATTTGGTAATGGGGTGGGGGGTTGCCCCTCTTCTGCTTTAAAGGGATCACAGCCCACCCTTG----AGTTGCCTACTTTTTCTCCTTTGACCTCCCTGTCACCAAGTGATTGTCTGAATAGGATTCTGTT-ATTTTGGGGGCAAAATAAGCAATACTGAGTTTAGGTTTTCATCCCATTCTGTTCCATAAAAACCAGGTTTTTCCAAAGCCAGTACTTAATAACTCTCT--TAATTAAGAAGACAAGAGCTCCTCCTTCAGTGTTCATTCCTGGATGCTGGTAAATGGTGCAATCA a score=2886 s hg19.chr6_ssto_hap7 3929595 80 + 4928567 AAACCCCCTTCTCGGCCTGCGCCCTCGCTGGAGGAACGCAAGCAGGAGGCGGGGGAGTCGGAGGAGGTGGCGGCGCTGGA s canFam2.chr36 8732978 75 - 33840356 aggctccgcccccgcccggccccgccgcccgAGGGACGCACGCCGG-----GAGGAGAGGGAGGCGGCGGCGGCGCTGGG a score=91851 s hg19.chr6_ssto_hap7 3929675 1336 + 4928567 GCTCCTCCCGGGGACCAGCGACC---CGGGGAGCGAGCACGTCGCTCCGCACCGCTCTTCCTCCAACCGCTGAGCCGTCCCTTCTCGCCCTGTCCCAGAGCAGG---CACCGCCGAGGCCCCGCCGCTGGAGCGCGAGGACAGTGGGACCTTCAGTTTGGGGAAGATGATAACAGCTAAGCCAGGGAAAACACCGATTCAGGTATTACACGAATACGGCATGAAGACCAAGAACATCCCAGTTTATGAATGTGAAAGATCTGATGTGCAAATACACGTGCCCACTTTCACCTTCAGAGTAACCGTTGGTGACATAACCTGCACAGGTGAAGGTACAAGTAAGAAGCTGGCGAAACATAGAGCTGCAGAGGCTGCCATAAACATTTTGAAAGCCAATGCAAGTACTTGCTTTGCAGTTCCTGACCCCTTAATGCCTGACCCTTCCAAGCAACCAAAGAACCAGCTTAATCTTATTGGTTCATTACAGGAATTGGCTATTCATCATGGCTGGAGACTTCCTGAATATACCCTTTCCCAGGAGGGAGGACCTGCTCATAAGAGAGAATATACTACAATTTGCAGGCTAGAGTCATTTATGG----------AAACTGGAAAGGGGGCATC-------------------------------------AAAAAAGCAAGCCAAAAGGAATGCTGCTGAGAAATTTCTTGCCAAATTTAGTAATATTTCTCCAGAGAACCACATTTCTTTAACAAATGTAGTAGGACATTCTTTAGGATGTACTTGGCATTCCTTGAGGAATTCTCCTGGTGAAAAGAACAACTTATTGAAAAGAAGCCTCCTTAGTATTCCAAATACAGATTACATCCAGCTGCTTAGTGAAATTGCCAAGGAACAAGGTTTTAATATAACATATTTGGATATAGATGAACTGAGCGCCAATGGACAATATCAATGTCTTGCTGAACTGTCCACCAGCCCCATCACAGTCTGTCATGGCTCCGGTATCTCCTGTGGCAATGCACAAAGTGATGCAGCTCACAATGCTTTGCAGTATTTAAAGATAATAGCAGAAAGAAAGTAAATTTGGAGCAACTTAAAAAATCTTTCAGTAGCACATAAAAAGTTCCCCTCTGGCCCCTTCCCAAGTAAAACTTTTACCG-TAGTGTTTATGTCTTGTTTCTAAATCTCTTCATAGATTCCATCAACACTCCAGATTTAATTATCTCCTCATAGTTGTTGTTAAGCTCTTTTTAATGGCTTCAACTTTGTATCAGTATATTGTATTTATAAACTTTGTACCACAAGAGAGAGTGTAGCACCCATTTTACAGTGCCATGCACATCAGAGAAAGAAACTGCATGTTTGTTGTTGATGAT---------------GAAATAAAAATGCTA s canFam2.chr10 33071596 1384 - 72488556 GCTCCTCTCGGG-ACGGCCGACCGGGCAGGGAGTGGGAAGGCAGCTCCGCAGGGCTCCTCCGCAGGCCGCCAAGCCTTCCCTTCCCGCTAAGTCCCAGAGCAGGTGGCGGCGCCCTGGCCCC--CGCTGGAGCGCGAG-ACAGCGGGACCTCCAGCTTGGGGAAGATGATTGCAGCTAAGCCAGGGAAAACGCCAGTTCAGGTATTACACGAATACGGCACGAAGACCAAGAACATCCTGGCTTATTACTGTGAAAGGTCGGATGTGCAAATACACGTGCCCACTTTCA------GAGTAACCGTTGGGGACATAACCTGCACAGGTGAAGGTACAAGTAAGAAGCTGGAGAAACACAGAGCTGCGGC-----CCATAAACATTTTGAAAGCCAATGCAAGTATTTGCTTTGCAGTTCCTGACCCCTTAATGCCTGACCCTTCTAAGCAACCAAAGAACCAGCTTAATCCTATTGGTTCATTACAGGAGTTGGCTATTCATCATGGCTGGAGACTTCCTGAATATACCCTTTCCCAAGAGGGAGGACCTGCTCATAAGAGAGAATATACCACAATTTGCAGGCTAGGGTCATTTATGGAAACTGGAAAAAACTGGAAAGGGGGCATTaaaataaaaatttaaaaaataaaaattaaaaaaaaaaaaaaaaACAAGCCAAGAGAGACACTGCTGAGAAATTTCTTTCCAAATTCAGTAATATTTCTCCAGAAAACCACATTTCTTTAACAAATGTAGTAGGACATTCTTTGGGATATACTTGGCCTTTCTTGAGGAATTCTCCTGGTGAAAAGATCAACTTATTGAAAAGAAGCCTCCTCAGTATTCCTAATACAGA-TACATCCAACTGCTTAGTGAAATAACCAAGAAACAAAGTTTTAATATAACATATTTGGATATAGAAGAGCTGAGTGCCAATGGACAGTATCAGTGTCTCGCTTAACTATCCACCAGCCCCATCACAGTCTGTCATGGCTCCGGGATGTCCTGTGGCAATGCACAGAGTGATGCACCTCACAACACTCTGAAGTATTTGAAGATATTTGCAGAAAGAAGGTGAGCCTGAAGCAACTCCAAAAG-CCCTCAGTAGGACATAAGAAGTCCTCCTTTCACCCCTTCCCAAGTACAATGTTTACTGTTTGAGTTTGTGTGTTGTTTCTAAATCTCTTCCTAGATTCCATCAACACTCCAGATTTAAGGATCTCC---CAGTAGTTATTAAGCTCTTTTTAATGGCTTCGACTTTGTACTGGTATATCGTATTTATAAACTTTGTACCATAGGC-AGAGCGTAACACCCATGCTACAATGCCATGTACATAAAAGGAAGAAATTGCATGTTTGTTGATGAGGAGGAGGAAGATGGCAAAGAAACAAAACTACTG a score=13771 s hg19.chr6_ssto_hap7 3931011 192 + 4928567 GCAACAGTCTTTCTTACTGGTGCTTAAGCTCTTCTTTGCACAAAGCTTTATAAAGGGAATTCAAAGGAAGCCCTTTAGAATTAGAGTCTTGAGGGACAGCACTAACAGGCCTTTATTAAGTATGATTGTTAAATTTCAGGGAACATGATTGGTCTGCTGTGTATTTGAATTCATGTAACAAAGAACTGTTAC s canFam2.chr10 33073199 191 - 72488556 ACAACAGTTGTTCTTACTGGTGTTTAACCTCTTCTTTGCGCAAGTCTTTGTAAGGGGAATTCAAAGGAAGCCCCTTAGAATTAGAGTTTTGAGGAAT-GCACGAACAGGCATTCATTGAATGTGATTGTTGAATTTCAGGGAACATGATTGGTCTGCTGTGCATTTGAATCCATGTAATAAAGAGCTGCTGC a score=5369 s hg19.chr6_ssto_hap7 3931203 244 + 4928567 GATG--GGATTCTGCTCATTTTATTAAAAAGCTACTGACTTGACTGTCGTCCTGTTCTTGTTAGCCATTGTTGTGAATAAGAT--TTTAATGTTGATAATTCTGTTATTTACATATCTCTAATTTACTT-TGAAATTCAAAGGTG----AAAATAAAAAACGATGGCCTA-AGTAAAATTTACAA--ACATAAAAAAAAACAAACCC---TTCTCTCCAAGAGGAAAGTGTTACTGCAAGATTGTCCTGTCATTTTGCT s canFam2.chr36 8752083 245 - 33840356 TGTAACGGGTTCTGCTCGTTTAATTGAAGTGTTACTGACCTGAC--TCGCCCC-TTCTTTTTAGCCATT-CTGGGAGTGACATGATGTGATACGGGT-GCTCTGTGACTTCCCTATCTCTAGTGTACTTCTGAAAGTCAGAGTTGGGGAAAAAAAAAAAACCACGGCCTACACAAAAATCTACCAATACATGGGATGAATCACTTCCATATTTTCTCTAAGCAAA---------TGCAGTGTTGTCTTTTTCTTTTTCT a score=63367 s hg19.chr6_ssto_hap7 3931447 1200 + 4928567 ACACACAGCCTCGGGGCCCATCA-GCCAGT------------AATTCTGCTTCCCATAATTAATGTGTCATC--CTCTCATGTTTTTGCATG----CTCTCCAGGCTCAAAGATGCAGCATGTAATAATTTTAAGAAATGTACATCCACATCTTGATGACTAGAAATGGGGATCCACAAGGAATCTTTCGAAGTTCTTATCCAAACTAGTCTCCCTCCCAATTCCACATCTTAAAATCAACTTGTATGCCCTTGAACAAATTACACAAAACGAGGAAAACAAAGACCCAGAAAACTTTTTTCCCC-----AAGTTAGTGACCTCATGAATTTTGTTTCACAGCTTATGGAAAATGGTAAGGTGACACTTCTGGTAAATAGGATGTTGGCAACAAAGAGAAAATATCTCTCCTCAAACTCCACCA---------------ACTCTAACCTGCCAGCCCGTTGTTACCTGTGTAGTAAGAAGAGTCTGGTACCTTGGAGAGCTCTGGCTTGTTACAGGAGAGATCCTTACTGCCAGGATAAACACTGGCCACAGGAAATATAAGTT--CTAAAACTCTCCTGTAATATTTCTGATCCAA--TTTAGCACGACTTCTTTTCATTTTATTTTTTAGAACTGAAACATTTTAAAAGAACCAGTGTCCAGAGGCAAGTGACATATGCCTTACACGTGTGGCCATCCTTAATTTCTTCATTCATAAACTTTGCTTAAAAGTCTAAAATCCCCAATTCTCTATAAAAAATATATTCTTGCCCTCAGTCCTGATGGCCACTGGCAAAGACTTTTATTTCCCAATGGATGAGAGAGGCTCCTTTGTCTTCTTGGTCATAGTTGGGATGACATGCATGTGGTCATCCACACACTTGGTCACACAGCCAACCAGCTGCTGCTTCACCTGAAGCTCCTTACTCCCAGCATCTATTGAATCTTTGGCTTTGTGGTTGCAATGCATGGTGCACCGGGCCAGGCAGTCCTGGAACT---------CACTGGTGACCAAAGCCTGGGATTAAGCCAGAGGAACATGGCAGAGTTTGACACACTGGTGCACCTGCTGCATGGAAGCCTGCCTGTCCTCACGACAGCTGGCACTTCAACGGAACATGAGACCCTGCATATTCCGGATGTTCTCTCTCTCCAGATTGTTCAGGATGGAGTCCACTGCCTCCTGCACCAGCAGCGGCTGCAGCTCCTCCATGGCGACCCCGTGCTGCCCCGTGTGGCGCCGCC s canFam2.chr4 90965424 1217 + 91483860 GCTGATAGCCTCGGGGCCCGTCATGGCAGCTGGCGAGAGGGAAGATCTGCTTCCCATACCCAATGGAGCATCACCTGTCATGTCTTTGCAGGGTCTCTCTCCTAGCTGAAAGATGGGATGTGTA----TTTCAAGAAATGCACACCCACACCTTGATGGCCAGAAACAGATAACCACAAG-ACCTGTTCAAAGTTCTTATGCAAACTG---CCTCTCCCAACTCCATATCTTAAATACA--TTTCATGCCCTTCTATATA----AAAAACCAAGCAAACCAAAGACCCAGAAACCCTTTTTTTCCCTTCTAGATTAGTGACCTTGTGGATTTTGTTTGACAGCTTATGGAAAACGATTTGGTGATCCTTCTGGTAAACAGGAGGTTGGCAACAAACAGAAA-CACCTCTGCGCACAC--CACCAGATTGCAGGCAGGTTACAGGAACCTGCCAGCCTGTTGGTACCTGTGTAGGAAGAAGAATCTGGTACTTTGCAGGGCTCTGGCTTGGTACAAGGGAGATCCCTACTGCCAGGACAAGCAC-------ATGAAATTTAGGCTAACAAAAACTCTCCTGTGCCATCTCCGACCCCAATTTTAGCACCAGTTTTTTCCACTTCACTTTCTAGGATTGAAACGT---AAAGGAACCAGTGTCCAGAGGCAAGTGACACAAGCCTCAAATTTGCTGCCAACCTTAATTTCTTCAT----AAACGTCGCTTAAAAGACAAAAAGTCTTGTTTCTTTTTAAA---TAGATTCCCGCTGTCAGTTCCGATGGCCAATTGCAAAGACTTCT-TTTCCCAATGGACAAGAGACACTCCTTCATCTTCTTGGTCATGGTTGGGATGAGGTGCATGTGGTCATCCACACACTTGGTCACACAACTCTCCAGCTGCCTCTTCACCTGAAGCTCTTTACTTCCTGCATCTATTGAATCTTTGGCTTTGTCATTGCAATGCATGGTGCACCGGGCCAGGCGGTCCTGGAACTTCTCCAGCTCACTGGTCACCAGGGCCTGGGCTTGAGCCAGAAGCGCATGGCAGCGTTCAATGCACTGGTGCACCTGCTGCATGGACACCTGGCTGTCCTCGCAGCAGCTGGCGCTGCACCGGAACGTGAGGCCCTGCATCTTCCTGATGTTCTCCCTCTCCAGACTCTTCACCACGGAGTCCACCACCTCCTGCACCTGCAGCTGCTGCAACTCCGCCATGGCGACCCCGCGCTGCAGCCCTCGCCACCGCC a score=27301 s hg19.chr6_ssto_hap7 3932649 1096 + 4928567 TTTCTTTATTTTTAAAAATATATGATTTTGCTCTTTTTCTTCCCATGTGC---ATTAGGCCCACTTTACAAAGGTTGAATCCTGGCTTGTCTGAG----CCCGTGTGATCCCACGGTCATTCCAATGTGTG-AGAAAGTGGGT--ACTGGGAATACCCTg-gaaagtgtagttgctcctcataaaggcacacaggaaagagtagtatccttttcctgcctttgggacttgttgtgaaagaataagaaacctaaagctgctgcgagggtcctcccaccatctcag-----ctgatgtgctgcttgtgatggagagatgagctatgaagttccaggatcactggtgatgccaccggcctgctgagttgagcaaacctggagatgcccagccttggatctgttaggctatgcg-gataatGGGTTAAAGAAAAATAAAG--------GTCGGATTTCCTGCTATTCGCAGCAGAAGTCATCTTCATTGAAATATTCATCCCACACATTTTAGTTCTACCTTATAATTCCACACAACAAGTCTGA---------AGACAAATCATTTCCTCAGCTTAGGGAACAAAGCCTATAT---GTTGCAAAGCTGGAATCAAACAGA------------------------GCAGACATAATTATCAGGTTAATATATTCCTATAGGATTTACATTCTTATAGGATTTATATGTACTTGTACTGCTATGTATGTACA-AGTAACATATAATTAAAA-ATAAAATGCATAAAACAAGCATTGAATTTGAAAACAAAATAACAGTTGTTTCTGACAGTAGAGAAATTATGCTCAAATGATTATTACTTTGAAATAAACTTTTGAATTGATTATGTACT-TTTAGATTTCA--CATGTTTGATACTGACTCA--GATAGAACACAATGG-AGAACCCTCCATCTTCTAAATTTGTCT-------TTCTCTGAAATGTGTAAAAGTCCTTTGATAATACTATATTACTTACATCTCTGGAATGAAAAATTATGTACTAATTTACAGTTATGGATACACAATACTGTAGATGGGGTTAAGAAAGAGTCTGATGAACTTGCTAGCTGGTTTC--TCATCTCATGTTGGCCAAGTTTGTTTTAGTTGTTATAGTCTGTTCTCAGGTTTTATGCATTGGCTTTTTAAACATT s canFam2.chr12 5153004 1103 + 75515492 TTTCTTTCTTTCTGAAGAT-TAT----TTGCTCCCATCTTTCCAATGCATCAAATGAGGCAGGCCCCACAAAGCATGAAGCATAGTTTGTCTGAGACTACCACTGTCATTCTGTGGTCCTCTCAATGTGTGGAGGAAGTAGgtctactgagaacacttgaagaaggtttagttctcccttataaaaatgtatgaggagaaactgttcccttttcctgtctttggaagttat----gaagaaaatgaagcctaaagctactgcagccatcctactaccatTTCAGGAATACTGACTTGTGGTGTATGATAAAGAGAAGAGATACAAAGTCCCAGGATCACTAGCAACACCATTGGCCTGATGAACTCA-CCAGCTTGGAGGTTAACTACCCAGGGTCTATC-TGCTACGTGAGACAAGGAGTTAAAGTCAAATAAAGCCAATTAAATTGATTTTTCT--CACTAGCAATAGAAAGCATCGCCACTGAAATATTCCTGCCATACTTTTAAATTCTACATTATAATGTCACACCATAGATCTCAGATAAAATGAGACAACTCATTTCTGCATCTTAAAGAACACAACAAAAGTAAAGTTGCAACCCTGGGATCAAACAGCATCTGATTAAACCATATAAATATTGAACACATGACTGTTAGCTTATTAAATTCCCACAGGA--------------GGATA-------ACCTGT-----------TTCACACATTAATGCATAATAGAACTATAATATTTGTAAAATAAACTTTGAATTGGT-----------CTGTTGTCTCTTATAGTGGAGAAATTGTGCTGAAATAGCTATTAACTTGAATTGAACTTCTGAATCTATTGTCTACTCTTTAGATTTGATTTACTTTTCAAAATGACTTGTCGACAGATTATGATAGCAGAACTCATCATCTCCTTAACCAATTTAGGTGTATTCTCTGAAACCTTTCCAACTTTTT---------TATATTATTGAAGTCTATGGAATCTAGAACTATATACTGATTTACAATTATAGTTCCACAGTGTC-----CAAGCTCCAAAAATACTTGGTTTACTTTTCTAATTTGTTTCCATTATGTACTTTTTGTCACATTT-TCTTCATCACTACAGTTTGGTTTTAATTTTTACATATTGACtttttaaatttt a score=3042 s hg19.chr6_ssto_hap7 3933881 88 + 4928567 ATGAAAACCATCATTCTTTTGGGAAATA-------ATTTTCTTTCTTTCTTTTTTTTTGT------------CCTTGGAGCCAAATGGTCCAGATGATTTTTTGTTT s canFam2.chr12 5155224 107 + 75515492 ATAAAAACCATTATTTTTTTGTGATGAATCCTCCCATTCTCCCTCTTTTTTTTTTTTTTTTTTACTTCTCTTCCTTGAAAACACATGAAGCAGATGATTTTCAATCC a score=20483 s hg19.chr6_ssto_hap7 3934287 564 + 4928567 ATTTTTATCTCCGTGTGTGAGAAACATTTAATAATGTAATGTGTTTGTGGCACAAGGGGGGAGTACAGATGCACGGGAGGCAGGAAGGGT---TAGGTAAAGGGGAGCACAAAAGTTGAAGATGAGGTGCTGCCATCAATGCCAGGACTTC-AGGCCAAAGGCAGGGGCTGAGGAAGCCACAAGGGAGGACATTTTCTGCAGAGTTGCTGAA-CCAGTAGCAACCAGATCCTGAGAAAGCCCTCT-CTTATGGAAGAATAACAGCCAGGTGGGAAAGCTTTTCATCCTGCAAAG---CTGGGGAAGAAGGTTCCTCCTTGAATGTGGTCATCTTCACTTCAGCTCAGGAGTCCTGCAAAAGACAGAGGAGAGTGTTGTTTTCAGATCTGGCTCTACTAACAGCTTCCTTTCCCCTCTTTCAAGGACTCAGATGAGAGCACTGCAGGAAGAAGAAAAACAAGTTCTTAAGTCTCCATGAGCCAGTACTCCTGCAGAGCACAGGCCTTTT-CTATGTGGAGAGAAGGAGTTTTGGTGTAAATTGCCTGATCAGAAATTTGAATCCAAAGTCTTTTT s canFam2.chr12 5155331 546 + 75515492 ACATTTATTT--------GAGAAAAGTTTA-TAAAGAAACATG-------AGCAGAAGGTGAGTTCCCATGCAAGGGAAACATAAGGGCTGCATAGGAAGAGGAAGG---AGAGAATGCAGATAAGGTACTGCAGTCAGCACTGGGGGTTCCAGGTCAAGGACAGGG-CAGAGGGAGCCATTGGGGAACACAAGCTGTGCAGGGTCACTGAAGCCAGGGCAAACCAGATCCTGAGAAAGCGCTGTATTTGTAGAAGAATAAGAGCCAAGCTGGAAACCTTTGGACTCTGAGAAGAAGCTGGAAAGGAAGGTTTTTTCTTGAGGGTCACCATCTCCACTTCAGCTCAGGAGTCCTGCAGAAGACAGAGCAGAGTATTGTTC-CAGACCCACCTCTATAAGCAGCTTCTTCTCCTCTCTCTCAAGGCCTCATGTCAAAGCGCTGCAGTAATTA------CATATTTTTAGGTCTCCTTGGGCCAGAGCTATTTTACAGCGCAGGCCTTTCACTAAGTGGAGAGAGGTAGCGTCAGTATAAACTGCCAGATCAGAAGTCAGA-TCCAAAGTCTTTCC a score=14689 s hg19.chr6_ssto_hap7 3934851 355 + 4928567 ATTATTTCTGTCTCATGCCTTATCACCTCCACTATC-ATTCTAGGGAAATTGAATCTGTTTCTAAAAGAGAATTAAAAGGTATTACCTGTTGGTTGAAGTCCAGAGTGTCCCAGGAGAAAGAGGAAAAGATATACACTTAAAAGATATGGAAGCAAATCTGTCCTCCAACACAATGTCCCAGCCCCAGATCTCCCACCTGAGATTTGTCTAACACCACAACCCACA--GCA----ACCAGGGCAGAGAGGAGCAGAAACAGACCATGTGACCCATGAAGCGTGATATGTCTGTCACACGA-TCCAGTGTAATTGCATTAGTCTTAGTGGCTCTTCCTTAATTTGCTCCAGGATGTCAAACGAA s canFam2.chr12 5156087 339 + 75515492 ATTATTTCTGTCT-------TTTCACCTTTACTATCTGCTCCAGGATAACCAAATCTATCTGTAAAGGGGA-TGAAGGAGCATTACCTGTTGGCTGAAGTCCAGAGTGTCCTGGAAAAGAGAAGGGAAGACATAGACTTAACAGATATGGAGGTAAATCTGGCCCCATAGACAAGATTCCAGCCCCAGACCTGCCTCCTTAGATTTCTCTAACAGCCCAACCCATATTGCATGATGCCAGGGGAGAGTGGA----AAGTGAAAGATATGACCCATGAAG-------TCTCTGTCACACAAATCCAGTTT-----CATTAGCTTTAGCGTCTCTTCCTGCATTTGGCCCAGGATCTCAACCCAA a score=63563 s hg19.chr6_ssto_hap7 3935514 1463 + 4928567 CTTATTAACCTTTCTCTTATCACTGCAGGCCATAAG--CTATTATGCTTTGACATAGTAACCATGCACTGATGATTTCTGGATTATCAGGACATTGGAGGTCATTTGCGGAAAGAAAGGCTTTATCTAGGGCCACTCATATACTGAGAACTAACCTCAGCAAAGCCATATTTCCTCCTCCAGATAAGTCTATGGAGAGAGCCGAT--ACAAAAGACTCCTCAGCTTTCTGATTCCTGAAGTAGATGAACAGCCCGGCCCCAAGGAAGAGCAGGCCCAGCACGAAGCCCCCGACTCCACTCAGCATCTTGCTCTGTGCAGATTCAGACCATGCTCCTGAGAGAGGAAGCAAGGATTAGTGATTTTTATCCTAAATGGA--------------------ACCTCTTTAAT----------------TGA--GACCCTGAGATTCAGAGCTTTGAAAATAAGAGAG-AAGGCTTCCCTGCAAGAATGAAAATAACTGATCATTTCTGGAGAAAAAAATGATTTTCAAATCACACTGCACAGTTACAAGGTTCAGGCATCAaactcattcaaatattacagccttgatgtaaggcacaacttcaacatctgatcaacagaaagtctgagactcaatgaggt-taagtagtttggctagagtgacagagctaataaaaggcaaagctgagactggattccCCTCATGTCAGGAGGGCCCCTACATTACTTCT-CTTCTCAGGTCAAAA-AAACAACTCAGAGCAACAGCACCAGAAACACAGTCTCACACCCAGAGGCAG-GGCCTGGAGCCCAGGGAGAGCAGGTGAGCCTGATCTGTGACATCATGGGGAGGTTCAAAACAGGGACAGCCTC--TCCTGCTTGGCAGGCATGACTGCTTCCCCAGGGGGTACAGGTGTTTCTAGAAAGTATTACAGG------------------------------GCTACCCCCCAGTGACCTGTGCTAATGGAGATGAGAACATGGAGCAAATGAAAACATGATGTGGGAGAGAAGAAACCTGACACTCAGGGATTACCAAAGACCCCTTCATGGTTGGTGAGAAATGTATGAAGTCAGAAAGCTGCTCACTCCATTCCACTGCATGAGAAGGCTCATCATGCTTGGGTGCTCCAGTTGACAGGTGTAAACCTCTGCATTCTGAGGAACTGTTTCCAGCATCACCAGGGTCTGGAAGGTCCAGTCTCCATTCTGGATCAGGCCTGTGGACACCACCCCAGCCTTCTCTTCCTGGCCATTCTGGAACCACCTGACTTCAATGCTGCCTGGATAGAAACCACTCACAGAGCAGACCAGGAGGTTGTGGTGCTGCAGGGGCTGGTCTTTTGAAGGATACACAGTCACCTTAGGTTGGACTAGGAGAAGAACAAGTAGAGGGAATGAGTCAGGAAGA-----AGAGTAAGTCTCCATGTTTTGCTGTTTGTCTGCTTC---TCTGTAAACCCAGGCTCTGGCCTTGACCAGGCCTCCAACACAGCTGGCCATGTGGCCTCA-------CAGTGTCATCAGC s canFam2.chr12 5156436 1527 + 75515492 CTTGTTAATCTCCTTCTTAGCTCTACAGAACACATGACCTCTTAGGCTGTGACACAGTAACCATGGACTGCTGACTTCTGGATTTCTAGGGAATCTGAGGTCAAATTGGGAAAGAATGGCTTTATACAGGGCCATCGGTACACAGAGAGCT--TTTGATCAAAGCTGTATTTCT--CTCCACATA-GTCTCTGGGGAGTCTCAGTTACCAACAGGTGCCTTACCCTTCTGATTTCTGAAGTAGATGAACAGCCCCACTGCAAGGAAGAGCAGACCCAGGACAAAGCCCCCGATTCCACTCAGCATCTTGCTCTGTGCAGAATCAGACTGTGCCCCTGAAAGAAGAAGCA-GTTTTAGTGCTTTTTACACCAAACTGATGGACACTGGGATTGAGAATGTCACTTTAGTGATTTTTACACCAAACTGATGGACACTCAGTTTGAGAACTTTGAGAATGAGGAAGGAAGGCTGCCTTGGAAGAAGTAGAATAATTAGCAATTTCTGGAAAAGAAA-----TCTAAAATCACATTGAGTAGATACGAAGTCTATGCATTGACCTT-TTTAAATATCACAATTCTGACA-AATCCACTACTTCAACAtct-atggatgaggagcctgggactccgtgaagtacaagtagcttgtgcagggtgacagagctaataaaagg--aatccaagattggattccCCTCAAGTCAGAAAGGTCCCTACAATGTAAAGGATTCTCAGATGACAATGAAGAACTCAGAGCAACAGTGCCAGAAGCACAAGCCCAG--CCAAAGGCAGTGGACTGGTGCCCAGTGTCAAGATGGAACTCTGACCTGTGA-ACCATGGAAAATCTGAAAACATGGATAACCTCCTTTCTGCCTGCCACATCTAACTGCCTCCCCAAAGACTGCAGG-ATCTGTAGAAATAATCACAGGATATCTTAAATTATCAGAGGACATCACTCAGCTACCCCC-AGGGACCTGTGCTAA-ACAGAAGAGAATACGGAGGAAAAGAAAATATGGTATAAGGAGAGAGAACCCTGACACTCAGAAATAAGCAAAT-CCCCTCTTTGGTAGTTGAGGAACTTATG---TCAGGAAGCTTCTCACTCCATTCCACGG--TGACAGGGCTTGTCAAACTTGGGTGCTCCACTTGGCAGGTGTAGACCTCTCCGCTCTGAGGAACTATCTCCAGCATCACCAGGATCTGGAAGGTCCAGTCTCCATTACGGATTAGGCCTGTGGACACAACCCCAGCTTCCTCTTCCTGGCCATTCCGGAGCCACCTGACTTCAATGTGGCCTGGATAGAAACCATTCACAGAGCAGACCAGGAGGTTGTGATGCTGCAAGGTCTGAGTCTTCGTAGGATACACAGTCACTGTAGGCTCGACTAGAAG-AGAAGTGGTAGAGGGACTCAGTGAGGAAGACAGACAAAGCAAGTCTCCCTGGTTGGCTGCCTTGCTGCCTCCAGTCTCTGGTCACAGGCTGC-ATTTCAAGCAGGCTTCCCTCAAAACTGACCATGTGGCCCAATAAGGGCCAGTGTCATGAGC a score=2639 s hg19.chr6_ssto_hap7 3936977 61 + 4928567 CTGGAATTGAATCTTTATAAGGAGGACCCATTAGATTTGAGAGATGTTGTGAAAAATTGTG s canFam2.chr12 5158189 61 + 75515492 CTTGAATTTAATCCTGACTGCATGAGTCCATTAGATTTAAGTGATGTTGCAGAAATTTGTG a score=10085 s hg19.chr6_ssto_hap7 3938378 122 + 4928567 CAGGCAGATAATATGTTATTCTATCCTTGGCCCACAGATTTATGGTAGAGATGGTGGATTTCTTTATTCTCTTCTTTGTAAAAGCAACCATTATCTTAAGCATTATGCACCTCAGTGGGATA s canFam2.chr35 19521164 122 + 29542582 CAGGCAGAGAGTACATTATTCCTTCCTTGGCCCACAGATTTATGGCAGAGATGGTGGATTTCTTTATTCTCTTCTTTATAAAAGCAACCATTGTCTTAAGCATTATGCACCTCAGTGGAATA a score=10064 s hg19.chr6_ssto_hap7 3938500 124 + 4928567 AAGGATATTTCTAAGTTTGCTATGCATTATACAATAGAAGAAATGAATGAAGACACATCACTGGAAGACTTGCAGAAAATGATGGTTGTGGCTCTTTTATACAGATTATTAATTTGTTTCTATG s canFam2.chr35 19528586 124 + 29542582 AGGGATATCTCTAAGTTTGCTATGCATTATATAATAGAAGAAATAGATGAAGACACATCAATGGAAGATTTGCAGAAAATGATGATTGTGGCTCTTATATACAGATTGTTAGTTTGTTTCTATG a score=11821 s hg19.chr6_ssto_hap7 3938624 140 + 4928567 AGATAATTTGCATTTGGGGAGCAGGTGGAGCTACCCCAGGGAAGTTCCTGCTGGGCATTTGAGTTGAGACATGTGATACATTAGTGCTTATTGCACCAAGTCAGGTTTTAGTGATGCCTTCCTCAAATGTTAGCATTACA s canFam2.chr35 19529222 140 + 29542582 AGATAATTTGCATTTGGGGAGCAGGTGGAGCTACCCCAGGGAAGTTCCTGCTAGGGCTTCGAGTTGTGACGTGTGATACATCAGTGCTTATTGCACCAAGTCGGGTTTTAGTGATTCCTTCCTCAAATGTTAGCATTACA a score=37347 s hg19.chr6_ssto_hap7 3938764 535 + 4928567 ACGAGCTTTGATCAAGAATTTTTTGATTGCTTCTTTTTTTCCCTGCTTATATCACACTGCTGTTTTTTCAGCATAATTGAACAGCCTATGACACTGTAGCAGGAACCATTGTGGTAAAAAGAAATGGGGTCAGATGATGCCCCCCAAAGCCCTGATTTCCACATG--CTATAATAACGAGACTAAATTATGTATCAAGGCTATCAGTATCTCTAGGTTACACTAATTGATGATTTAGAAATTAAAGCAGTCACTCTAGTGTGATGCAGGTGACTACTCTGAAAGTATCGTTTTTACTTGAATGCCAAAGAATTTTTCCAGAAGAAAAACCTATTAAATTCAAGTATT-AAAATTTTTAGATCAAAA---AGGCAAATGATTATATA---AACAATGGACAATATATACTTTCTTAAGATCTA-------AGAATTTGCTGAAAGCATTTTCAGCTTTGAAATCTCCAAATGAAACTTT--AAAATTTATTTTGGTTTATCCCAAAATAATGGAAAATATCCAGTTGTGTTTTGTAAACACCTATGTAACTCAT s canFam2.chr35 19530809 548 + 29542582 ACGAGCTTTGATCAAGAATTTTTCTATTGCTTCTTTTTT-CCCTGCTTTCATCACACTGCTGTTTTTTCAGCATAATCGAACAGCCTATGACATTGTAGCAGGAACCATTGTGGTAAAGAGAAACGGGGTCAGATGATGCCCCAAACAACCCTGAATTCCATACTGCCTGGAATAACAAGACTACATTATGTGTCAAGGCCATCAGTGTCCCT-GGTTACACTAACTGATGATTTAGAGATTAAAGCAGGCGCTTCAGTGTGATGCAGGTGACTGCTCTGAAAGTATTGATTTTACTTGAATGCCAAAGAACTTTTCCAGAAGAAAAGCCTGTTAAATTCAAGTGTTAAAAATTTTTAGATCAAAAAGGAGGCAAGTGGTTTTATAATCAACAATGGACAATATATACTTTCTTAAGATCTAAGGCTTTAGAATTTGCTGAAAGCATTTTCAGCTGTTATATCTGCAGATGAAACTTTGAAAAATTTATTTTGGTTTACCCCAAAATGATGGAGAAAGTCCACTTGTGTTTTGTAAACACAT---TAACTCAT a score=7723 s hg19.chr6_ssto_hap7 3942278 229 + 4928567 GTTTGTTTCTTCATAGCTTGAAATTGGTATGCATTG--TCAAAATGTTTACAAATCTTTGAAAGTACAGagtgtagtca--ttaaaac-tgatttctgaggcaggttgcctga-ttcaaatccaatgtctacc-ttttactggttgatcctgtaagagtttttcgattct---gtgtctcaattttctcacctataatggaggataattatactaatttacctctttgggttatatgat s canFam2.chr12 5158252 238 + 75515492 GTTTGTTT-TTCATAGAGTGAAACAGTTTCTTGTTGAATTGAGGTGTTTACAAATTTTGCAAGGCATATAATGTATTTAAGtaaaagcatgatttctagagaagcctgactaaattcacgtccagactctattactttactgattcatcctgggagaatttttacattcttctgtgccccagctttttaacctatcaaggaggatagtaatactaacttagctctcaaggttacatgat a score=2047 s hg19.chr6_ssto_hap7 3942609 35 + 4928567 ATTAATGCATGTAAAATACATAAAACAATAACCGg s canFam2.chr12 5158490 35 + 75515492 actaatgcacccgaggtatataaaacaataactgg a score=5140 s hg19.chr6_ssto_hap7 3942957 75 + 4928567 ATTGATGAGGTCAGAAAGCTGCTCACTCCACTCCACTGTGATAGGGCTCATCACACTTGGGTGCTCCACTGCGCA s canFam2.chr12 70151597 75 - 75515492 ACTTATGAGGTCAGAAAGCTTCTCACTCCATTCCATGGTGACAGGGCTTATCGAACTTGGGTGCTCCACTTGGCA a score=15372 s hg19.chr6_ssto_hap7 3943032 577 + 4928567 CCTATTTATCATCCTTGAGAGATAAATATATTTTAAAGCAATGTGTATAGATAAAGGGACAGAGTAGAGTACATGAGGAAACTGAGTATGAATGTTTAGGAATATTACTGCCATGGACTCACACCTTAGAACACCACAGAGATGGTTTTGCCCCTGGGAAGGTGGGACAGACAGAAATCATTCTCCAAATCT-----TTAAGTTCCTAGAAAAGCATGAGTCCTAAGGCAGAGAGAAGGATTAAGGAACGTCATTTTAGTTTTGAAAGTTCTTATATTTACATTTAGCTGATCAATGCATCTCCCATGCAAAACAAGCATAACTATTATTAGGCCTGTCATGGTAAAATGATTTTTCT--TTCCAGAATGAAATTTGGAT-CAAGGAAGGATCTGGGACTCACTACTTGGGATGCTTAT-GCCTATGCAAACCTCTGACACTAGGATACTCTTAATAAATACTATTTTTTTTAAGAAGGAAGGAGAAACCTGGAGACAACAAT------ACCACAAAATGGTAGATTTAAGATGGATTGTAAATCATTAATATAAATTTCACAATATATTTGATTAAATAAAAATGTTCAAA s canFam2.chr12 5158557 570 + 75515492 CCTTTTTA-----ATTGGGGAGAAAATATGATTTGAAGAAGTGTTGCTAAAGTGGGGAACACCCTAAGATAGATGGGGGAAGAGAGTAGGACATCCTGGGAAAGCCAC--------ACTCACACCTTAGAACACCATGGAAATGGATCTACCCT--GGGAAGCAGGAAAGACAGAGGTGCTTCTCTAGGTCTGGGAGCTGAGTCCCAAGGACAGTATGAGTCCTGAAAGGGAAAGGAGCA--AAGGAAC-TCATTT-ATTTAAAAAAGTTCTTATAATTGCATTTGCCTGATTACTCCTTCTTCTTTGCAATATGAAAATATCCATTATTATAATTGTCATCATTTCATTAATTTATTAATTATAAACGGACATTTGAATTCAGGGGAGTGTCTGAGACTCATTAAAAGGTATCCTTAGAGCCTAAGATAATCCCTGACACTA---CAGCCTCCATAAATACAATTTCCGTTTTTGTAAAAGGAGAAATACGAGGAAAACCTTTTACAAACCATAGAATTATAGATCTAAGATTGATGACAAATCATTGCCAACTATTTTGTAGCAAATTTCATTCAATAAAAATGTTTACA a score=12501 s hg19.chr6_ssto_hap7 3943922 455 + 4928567 TTCTTAACATGGAAAAGAATTTTCAAAATCAACATACAAACCACAAACTGGAGAAAATGTTGACTCAAATATCAATAAAGTGTTAATAATCTTAC-CATACAAAAAACTCACAAAATCACTGAGGAAAGTAC-AAAGCCCTAAAGATAATAGATAGTAGATCATTGTCCATTACCTACCAAATGCAATAGGGAATTCTTAGAACAGTAATTATAATTGGCCAACAAATAGGTCAAAATAATTCAAAAGAACTATAT--GTCaaa-aaatataaattaaaaattaaCCATAAACATACATTTTAAACTTTTGGTGAATGTCATAATAAAGGTC-AACAAAGGGGAAAGTGAGGTAATTTGTGTCACAGCTATTA-TATATAAAAGAATAATACGTAAGTAGTAGAAAACTATTGGCATTATAATAAAATAACAAC-----TGTGTT-------AAAACTTTAATTCAAAAGTTAG s canFam2.chr12 5159127 417 + 75515492 TTCCTAGCATGAAAAGTAATAAACAGAATCAAAATATAAACCACAAACTAGGGAAAATGTTGAATCAAATATCAGGAAAGCTTTAATAATCTTATGCATGGAGA-----CACAAAATCACTGAGGAAAAAATGAGAACTCTACAGATAATAGACAGGAGAT-------------------------------AATGTTTACAGTAGCAACAACAATTAGCCAATAAATATGTGAAATAAATGTTCGAGAACTATATAAATCAAACaaatataaattaaaaataaaaaaGA-----------TAAATGTTTGGCAATATGGATAAAAAGGTTCTAACAAAGAGGAATGCGAGGTGAATTGT--------TATGACTATGTAAAGAAATCACATGCAACTCCTTAAATACTTTCATCATCATA--AAAATAGGAACATCAGTATGTTAAGTAAGAAAGTTATAATTAAAAAATCTG a score=4213 s hg19.chr6_ssto_hap7 3944377 116 + 4928567 TTTCACAGTCACTTCAACTATGTAAAAATACGCACACTAAGAAA-ACAAAAAAGTGGCAAGAAATTTAGACCTA-AAGAAGCTTCAGAGGTATCTCAGAGGTCTCCTCAATTCCCCTA s canFam2.chr12 5159748 108 + 75515492 TTTCACAATCATTTC----ATGTAAGAATACATACACTAGGAAATACAAA------TCAAGTAGCTGAGACCCAGAGGAAGCCTCAGAAAGATCAGAGAGGCCTCCGAGGTTCCCTTA a score=10889 s hg19.chr6_ssto_hap7 3944916 179 + 4928567 GTGCTCATTTCGCCGCTGCACTGTGAATCTCTCCACAACCCCATAGTTGTGTCTGCATTAGTTGTCCACTTCGGCCCGCTTCTGCTCCAGGATGTCCTTCTGGCTGTTCCAGTACTCAGCGTCAGGCCGCCCCAGCTCAGTCACCGCCCGGAACTCCCCCATGTCGCTGTTGAAGCGCA s canFam2.chr12 5252262 179 + 75515492 GCGCTCACCTCGCCGCTGCAACGTGTAGAGCTCTTCCACCCCGTAGTTGTGTCTGCACACCGTGTCCACCGTTGCCCGCTCCTGCTCCAAGATCTCCTTCTGCCCGTTCCAGTACTCAGCCGAGGGCCGCCCGAGCTCCGTGACCGCCCGGAACTCCCCCACGTCGCTGTCGAAGCGCA a score=22258 s hg19.chr6_ssto_hap7 3945095 1044 + 4928567 CGTACTCCTCTTGGTTATAGAAGTATCTTTACAGGTACCGC------TCCGTCCCATTGAAGAAATGACACTCAGACTTAGCCTGCTCCAAGAAACGTGCTGTGGGGACACGAACGATCCGGTTACAGAAGCGGACTCCGGGGAAGACACTGAC---------------TGGCCCCACCCGCAACCTCGACTACGCGCAGCCCAGGGGCTCATCCTCTGTCTTTCTGAGGCGGACGGGGGTACGGGG--GACCAGGTGGGAAAACTACCTCTGATCCC-------AAGGCTTTTGGGACCCCCTCCCTGCCTCCAGCCTGTTCTGGAGAAC---------TCAGTGCAGGAGCTGGAGGAGGATCCACCTACCACCGCAGCCCACGCTGCCTCCTCCTGGGA------------GCCTCCACCCCCAAAACACTCTCTGCTCCT-TCTCTCATCCCACACGCTTTACC---GGTTCCT------TCAGCAGTACCCACCGTGttcat---cctgt----gaacacttccttagtgatgaccttgtgcctgccctgcgctgcctctaggaatccaaacaagggaaaacagacctctccactccactgggggagcttaaagagcagtgaaagcgatggccaaaaaccaaacacgcaagagcttagacagggatgagaaatgtcagaagtgtggacttctagaacagaggataataggatgatctcaattacactagggtgccacagaaggaccctctgaagagtgtcagttcagatgtgacttgacaggttaagcaggtgtgagccagggggcagagtg---------------------gagcctgtgttgtctgttgggacaaaacgggaggcacttttcaggtttagg-aaatccca-tgtacaaaagctt----gaattgatgaacttcttcaggaaactagaacaa--agctcactaaagcagagaggctgaggggaaggagggtaaaatattagattggagaaatcaca-ggagccaggtatttaaaagcctcactgatggtgttaggattttggattta-actaaagacaatgggaaagtattgaagagttttaaggagaataaaaccatgatcCCCATAAATGAAATGTCCACAAGC s canFam2.chr12 5160646 1084 + 75515492 CGAACTCCTCCCGGTTATGGATGTGTCTTTCCACGAACCGCACCCGCTCCGTCCCGTTGGTGAAATGGCACTCGGGCTTAAACTGGTACACGAAATGTGCTGTGGGGACG-GGGGGATCCGGTCACCAGA---GGCTCC-TGGAAGACACCGACGGCGGCACCCCGCGGCGGTTCCACCCGC-ACCCCAACCACCAGCA-CCCACGG--------TTCGTGTTTCCTCCGCTGGCGGGGGAGGGGAGGCGGCCCGGGGGGACGA--------GACCCCGCTCAGGGGGGCCTTTGGCGGCCACTC---GGCTC---CCGGCTCGGGTGACCCGACGCCCGCCAGCGC--GAGCAGCCGCGGCCTTCACCCCTCCCCGCCGCCTCCCGGACGCCTCCCCGGGACAGACAgcccctggctcctcgccc---tcgcccctggctcctccccctcacccctcgcccctcgcccctggctcctcgctcctcgccctcgcctccCGCAGCCCTTTACCTGTCCTCAAACACGTCCCTGCTGCTTCCCCCTGGTTTGGGCTGAGCCGCCCCTGTGAATCCAGAGAAGGGAAGACACACGTCCC--CTCCGCTCGGGGAGCTCAAAATGGAGGGAAAGTGACGGACCAAACCCAAAGTGGCAAGACTTTGTACAGAGGTGAGGAATGTTAGAGGGATGAAGTTCTAGAACTGAGAATAGTTGGGTGGTCTGAATTACCT--GGGTGCCAGAGAAGTA---GTTCAAGGGTGACG--TGAGATGTGACATGAAGGATGAAGTAGATGC--GCCgagagagagagagagagagagagagagagagagagagagagagaagagTTTGGGGACAAA--GGGAGGCACCATTCAGGTCAAGGTAAATGTGACTGTGCAAGAGCCTGAAAGAACTGATGAATTTCCTCAAGAACCCAGAGGAAACAGTTGATGGAAACACAGACAGTGAGAGGAAGGAGAGGGCAGT-TTCGACTGGAGTCATCAAATGGAGCC---CACAAGAAAAGCCCGTGGGTGGTGACAGCTTTTGACTTTTATACTAAATTCAATGGGATGTGACTGA--AGTTTTAACGAGATTAAAACCATGATCGCAATACA------GTTCTCAATC a score=1462 s hg19.chr6_ssto_hap7 3946456 56 + 4928567 CTTCTTTTGCATTTCTAAGTCAACAAAGCTCAGAAATTAAG----TTAAAAGAAATTTGc s canFam2.chr12 5161730 60 + 75515492 CTTTACCTACGTTTCCAAATTCAGAAATCTCAGAAAACCAGATCTTTCTAAGAATTTTGA a score=20174 s hg19.chr6_ssto_hap7 3946781 643 + 4928567 CAAAACTCATTTGGTAAATCTTATAAGGGAAAATGGTCAAAGGTGTCTCAGAGCTCTTATTG----GTGACATGTGCTTCTGTAGTTTCAatacatatgaacatacatacata------tatgtgtgtaaatatacacatatgtaAAACACTATGTATATTTTTTGATGTTTTTGTCTTTATGTTTGACTGAAGT-------------------------------GTGAAAATGACTAAAATAACTTAAAAATAATCTTGTGGTTAAAAGTGAAATGAATACATAGAAGCATTTTACATTGTGAATAATATCAAATGTAGAATTACTACAGAAATCTGAGGTATGTTACT-GAAAAACAATTGCAGCAGCATCACTATTTGTGACTTATACAGACAGGCTGTTGAAAGTTAATAGAAATAGTGATGACTCATGAAAATGTTGAAAAATATTGCATAAGGCAAAAAATAAATATGAAGGTATTGAACTTGCATTGACTAAATGGATTCAACAACAAAGGTTGTTGAATTTATGCAACTGTCAAGTTTTTTAC------AATAAAACAAGCAAAAATAAACCATAAAGAGCTGAAGTGGATGGTGA--GTGTATAAAAGATCTGAGTGTAGAATTTTCAGAAAGAGAACAG--TGTGAACTGGTGCtctcagcctcagcacta----------ttaacattttgga s canFam2.chr12 5161792 661 + 75515492 CAGAACCCG-TTGGCAAATCTAATCTGATGAGGT----AAGGGTCGGTCAGAGCTCTTACTGGTCAGTCACGTGTGCTTCTGTAGTTTCAatatatgtaaacacacacacatcataattcatgtatatatatatgcaaacatg--------tatgtatatattttgatatttatgt-TTTACGTTTAATTAAATTAAGACAAGTGTTTTATTCAAGTATAATTAACATGAAAATTTTTAAAATATGGAAAAAATAAC----TGTTTAAAAGGGAGACAAATAAAAGAGAGCATCTCACATTATTAATAGAGTAGATTGTAGAATTAGTACAAAAGTTTGACATATTTTACTAAAAAAATATTTGTGGCAG--TCACAATTTATGACTGAGATGG---GGCTGATCA--------AGAAATCATG-----------AAATACTGAAAAACGTTGCATAAGGCAAAAAATAAAAAACAAAAATCTTGGCTTGCATTGATTGAATTGGCTCAACAAGAAA--TTGGTGAATTTACACAATTTTATACTTTATTACTTCTGTATTTAAACAAACTAAAATAAACCACAAAGGCCTGAATTGGAAGGTGAATGTGTGTATAAAGTGTGAGTCAAGAATTTTTAGAAGCCCCACAGTATATAAATCAGTGTTTTTGATCTCAGCATTAACATTTAGAGTTAACATTTTAGA a score=6457 s hg19.chr6_ssto_hap7 3947776 277 + 4928567 aggccgttctgtacattgtaggttctctagcggtgtccctggctcctactcattaaatatccgaagaaaaccctgttgtgacaatcaaa-aattgttataaacattgccacacgttcccCAAAGGTGATGGGAGGGAAGGCATAGGTGGTGAACTTTCCCTTGGTAAACACCACAG------------GGAAATCTGTGTTGAACAAGCCACTATTAGTTATGGAGCAGCTGAGAATTACATTGAAAA-------------ATATCTGTTGAACATCTTGGTCCTACATAAAATAAATGTTTT s canFam2.chr12 5164141 280 + 75515492 agcctgttctgtacattgtaggatgtctatcagcatcactagcctctacccactcaatgtcagatgaaacctcagcttaaaaaaccaaacaggggctccagacattgctata--ttctctg--------gggagggggtaccaa-------aacaattcctgcataagaaccactgTTATATTAACTGAAATATATGCGGTGAAAAAACTGATGCTAATTATGGAACAGCTGAGTATTACATTGAAAAATTTGCCAATATCATATCTGATAAAAAGCTTATCCC------AAGGAAATGTATT a score=21402 s hg19.chr6_ssto_hap7 3951619 610 + 4928567 tctagccttctttctgtccct--------ggacataatttctcacaccagggcttccccccatgctgtctccctggaactttcgttccttagat-cgtcacatgactg--tctacttattttgt--tgtctcatctgaatgtcactttctcaggtagagctgcctaaacacatgaactaaagtttggtgaatccatttctctcttttccacaaacctgatgtcttttctttagtgcact-attactatctgaaattttcttttttgataaatgattattgggttattttttatctc----ctctactcttgtgtaacttccatgagagtagcgaccctctctatcttaatcaaatagaatgatttgaacctagaatagagcccagtacacagtagctgctgagaaaaataagtgtgctttacatgaataaaC-CAGGGTTCTGGGAACTGATCACTGCAGGGATCCTGGAAAGCAAGAAGGGGCTC-AAGCTCAAGCACTCTTTCATTTTGATGTCATACTACACCCCTTCTCTTCCCAGTGTGAAATACAGGCAAACTTCTTCTTTCTCCTCCTTCTAGGTGGAAGAAGAATTCACAGATAAAGAAACAGTGA-TTTAAGCAAAAAGAAA s canFam2.chr12 5165796 597 + 75515492 Tctagccttcct-ctgtcttttaaactcagcaaacatcttcccacactttggcctctgtcc----tgtt---------ctctcttccctcaaattcttcacatggtggacttttcttcatcagtcatgtctcaactaaatgtcactttctcagggggagctccctagccacttgcaatgtagtcaggtgaatccagttctctctatttcacaaacctggtgtgtttttctcagagcactgattgctctctgaaattttttcttctt-taaatgttttttgggctttctactctgtcagtacactacc--------actt--atgatggtagtgat----tttatcttattcaaatagagttcactgagcctagaacagaacccattacaaaataggtgctcagaaaaatatctgtgatttaaacaaataaaCTCAGTGTTCTGAGAATCAGTCACTGTAAGGATCCTGGGAAGTAAAAAGAGGCTTTAAGCTTCAACACTCCTTTATTTTTATGATATATTATTTCCCTTCTACTTCCTGGGTGAAAATCAAACAAACTTCCTCTCTCTCCTACT-----GTTCTAAAAAATATCACGGATAAAGAAAAGTTGGCTTTAAGAAAAAAAAAA a score=15266 s hg19.chr6_ssto_hap7 3952555 444 + 4928567 TGGATCTCATAGTGCCCTGGCTCTGTGCAAACTTTAGGGATTTCTGGAAATGATGACAACATAGCTGAAGAAAAATAGAGAGAAACTGGAGGAAGAGGCAAGTGAACATGGCTAATTAAGGAAAGCTGAGGGCATGATGAATGAAACTATGAAATTTAGGAA-AAGACCACAGTAAGACAATGAGTTCCCAGGACTTGCTCATTGACTTTCAGCCCTATGAGATGCGGACAATGTCCACATCGTCTCTGCAACCCCACACAGAGTATAtagtttgaacattattaaatttcagatattttactatttttgacgtacaaaaatagaattttatataatttatcctaTGTTAGTTGAATCTTTTCTTGTCATGTCTAGTTAGAACATGTAGGAGT-TGTAGGAGAAACTAGC---ATAGAACAGTTAAAAA-GGATTCAAAATTAACACTAG s canFam2.chr12 5166642 438 + 75515492 TGTTTGTGATAATGCTGAAGGTCTGTGCGAACACTGGGCATTCTCAGTAATGGTGATGACAGAGTTAGGAAAGAATAGTGACAAACTGGAAGTGGAAGCAACCAAATACGGCTATTTAAGGAAAAA-GAAAACATGATGAATGAATCTATGCAATTTGAGACCAAGACCTCAGTAAGGTAGTAAGTTC--AGTTTTTGCTC-TTGGCTTTCAGTCCTATAAAATGTAAATAACCTTCACTCTTTCTGT---ACCTTGCTCAGGGTTTGCAGTTCGAATAC-ATGAAATTCCTGATATTTGACTAATTTTGGCTTTCAAAAACATAATTTCATATAATTTCTCCAATACTAGTTGAACCCCTTCCTGTGGGCTCAGGGCAAAA----TGGGAATATGCAGGAGAAAGTGACTCTATAGAAAGGTTCGAAATAGATTCATAATGAAAATTAA a score=39772 s hg19.chr6_ssto_hap7 3953312 1059 + 4928567 AGATGCCTTAAGTTCTTTAGG-TACCGAAGAATACCTCATAAATACTCTTTATCTGATCTA--------AGTACTAAAGATCTCAGCTTCCGCTCCAGGGATTTTTTCCCCCTAAGAAAGAAAGA---GCACTTAGTATAACTTCTGTCAGAGAATCTACATACATGTACAGGGATACAGGCTTTATAAACATTGGAGTTCAGAAAGAAAAGAAAGGAGATAATGGG-GAGGTCACTGGGTACATCCTCACATATGAGGAAGAAGGGCCAACACCACAGGTCCTTTGGAGGACATAACACAGGATCATCTAGGAGAGACCTTTTGAATTCCCTTG-ACTC-CCACAAAGTTTTCAGAAAATCCT-CGTTTTGTCTGGCATAAGTCAACATGATAAAGGGAAGTGCTGTATGGGGAATTTATTTTAGCATCCTTATTTCTAAATCCTCTAAAGACCCTGAGGAAATGTGATGCAA--------AGGTTTTATTGGTGGAGATTTGAAAAGAAATGGCCTGTATG-----GAAGTTCCTTACACAAACCTCATGGAGAGGGCAAGT-ACCAAGCTCCTTTTGTGGTGGAAATAACTTAGGATCC---CGTGATAAAGATGGGCAATCTCTGAAGAAAACGTCACAATCTCTTAAGGGGCATTGCCTGGGCACGGTGTTAACA--AAACTCCCTATTTTCCTGACCTCGTAGTAGCTCAGCACCCACAATGTGCACTTGCGTCGGGTGTCCCCAGCCAAAGCCAGTGGGGAGCTCAGCACCATCAGTGTCACTGTCAGAGCTGCCATGCAGGAGCCTCCAGGGGGCTTCAGACACACCATGCTAAGGAGCATGACAGGTCCAGGGCCCAGAGGGGCAGTCAAGTCTCACTCAGCGAGAACTATGACCCTGCTCCACCCATATTCCAAATTATAGGGAGGAAGTTACTGATTTCCTTGCTCCTGGATTGGGTAATCTAGTGTTGGAGAATGAATCAGCGTCTGAGTTCAATAGCATCATCAGTTGCTGGTCAGAGATGCTGTATGAAGGTCCTTTTCTGAAACAGAATTTACTTCTTTAAAGAATTTTTTTTACGAAt s canFam2.chr12 5167099 1052 + 75515492 AGAGATATTAAGTTCTTTAAGACACCAAAGAACACCCAATATGTGCTTCTTATTTACTGTATTATTTCAAGTACTAAAGATCACTGCTGTAGCTCCAGGG------------TGAGATATAGAGATAAAAATTAACCCCAACTTTTTTCAGAGAACCTCCA-----GTATAGG-ATAAAGGCCTTATAAACTTTGGGGCTCAGGA-GAAAGGAAAGGAGATCATGGGAGAAACCTCTTGATACATTCTCACATATTAGAAAGAGACACCAACATAACTGATCCAATGAAG-ACATAAAACAGGGTCTTCTCAGAGAGAACTTTCTAATTCTTTTTCATTCACCATAAAATTTTCAGAGAAGCTTTCCTACTTTCTAGCATAACTCAACATAATAAAGGGAACTACTTGATGGGAA--TTAATTTGGAGTCATTATTTCTAAGTCTTCTCAAGACCCTGATGGAATGAGATGCAAGCCTGAAAAGCTTTTATTGGAGGAGAGTTGAGAAGAAATGGCCTATATATATGAAAGACCCCTTAAGCAA--CTCTTGTAGAGGGCAAGCCGGTGAACTCCTTTTGTTCTCAATAGAATTGGGGGTCTATATATAATAAAAATTGGTGGTTATTGAAGAAAATATCACAATTTTCTAAGGGACATAGCCTGGACACAGTGGCAAAACTAATTTCTTTCTTCCCTCCAACCCATAATATCTTACCACCCAAAGTGTGCACTTACGTGGGGTGTCCCTGGCCCAAGCCAAGGGAGGGTTCAGCACCATCAGTATCAGCATCAGAGCTGTCATCCAGGAGCCTCCAAGAAAACACAGACACACCATGCTGGAAAACAGAAAGGA--CAGGGTGCAGGGGAGCAGTCAGGTGTCACTCAGTGAAGACTGGGACCCTACTTTGGCCACATCCTAAATAACACTAACCAAAGAATTCATTTCATTGTCCCTGGATTGGGTAATCTTGGTGATAAGAACCAATCAGCAACAGCAATATATTGCATCATCAGTTGCTGGTCAGAGATTCAGTATGAAGAGCCTCTTCTGAAAC----TTT------------GATTTTGTTCATTGAA a score=21789 s hg19.chr6_ssto_hap7 3957881 526 + 4928567 AGGATTGTTTTAATTTAATACTTCATTGGTTTGATCCACTTACAAGTAAGATACTTTAATTGAGCCCCTATTGTTAGCCGGCTCTGTGCTGGTCAGTAATGTGTTCACAAGTTTGAGCCTTGTAAGAGCATTCATTTCTCACTTGACAAGACAACTGTTTGCAGGAGTGAG-TGTGTGA-GTGTGTTTAGGAATAAAGGAGATGGAGGGAACATGGTTGCAAATTTGGAG-ACTTTAATCTGATCCTTATTGTACCATATGTTAATGTTGTAGATTTCAGAAAATTATTTCATGTTTCACAGTTGAAATAAAGACACTATGTTCTTTCAGGTCTTTCAATACTGGAAAATGCTGTGATTCTCTGGACGCCTCAAGGAGCAGCAGCCCCGGGTATCTGATGATATGACAGAATGACAGCTGTTGACTAGAGAGTTTAATCTCTACCTATTTACAGGTAGGGATGCCTTCAATAAGTTAAAGTAAACTGAAAGTTTGTGAATAATTTAATCTGAGTAAAAACATTTTTCAg s canFam2.chr12 5168151 513 + 75515492 AGGATTGTTTTAACTTAATACTTTAAAGATTTGATCCAGGTGTATATGAAACATTTT-ATTGGACCCCTATTGTGAGCCAGTTCTGTGCTGGGCAGTGATGTGCACGAAAGTTCGAGCCTTCTAAGAGTATTCATGTCTCTCTTGAAGACAGAATTGTTT-------TGATCCATGTAATGTGTTTTTaggagctgaggacatggagag----tgattgcaagtcaagaaccctttgctctggaccttgctgcaccatcacttagtgttgtagatttgaggaaaatatttaacctTAACC--TTGAAATGAAGGCACTGCAATCTTTCTGGTACTTCGATA-TGGAAAGTGATGTGATTCTCTGGACAGCCCAAGGAGCAGCATCTCCTGGTAACTGATGATATAAAAGAATTATGGCTATTGATTGGAGAGTATAGTAT-TACCTCCTTATATGTAGGGAAGTCTCTGGTAAAGCTAAAGGAATTGAAATTCAGTCATTAAATTAACCTGAGTTAAAAGGTCCTTCAA a score=365 s hg19.chr6_ssto_hap7 3958703 25 + 4928567 GTTTTTTCAAGCGTGTCTCCTGATG s canFam2.chr12 5168664 15 + 75515492 GTTTATT----------TCCTGATA a score=22145 s hg19.chr6_ssto_hap7 3958728 497 + 4928567 CTGCCCCCAAGTTTaatggcacctccagaacatacacaggcaaggggcttgcaggggccacctgtgtgcaatggaggttc-tgaaggtgcctttgtatagcacttactctaacaatgtgacaaggtcaactgtgc-aatcaaagaatttaggggTTCGAGAGATCGATCAAGGACTCAAAGTTAGCTGTTGACAGAACAACTCTGttttaaaataattaatattttatGTG--AAGAGTGTTCAATCCCTCATTCCTGGTTCCCACTGTGATTTTCTCATTTGATTGAGGCTATGGCCCGTTACTATTATG----TTCTTTTGTTTTATCATAAGGGAAGATATAAGAAGACTGTGCT----AATACGTTACAGAATGTTCAGGAAAGAGAGCCCTAGGGAAAAACTATGAATTACATCAGTTGATGTAATCATGTAATTTTAAACATATAATTCTACATTTAGATAATTATTATCCCTTATATTAATATAAATGTGACATCTAAGATT s canFam2.chr12 5169273 501 + 75515492 CTATCATTGAGTTTGGAGGCATCTCCAGAATATGCATAAGGAAAGGGCTTAGA-ACATGATCTATGTGGAATAGAGGGTCTTGAAAGTTCCTTCATATAGCACTTAACCTAACAAAGTGATAAGGCCAACTGCCCAAATCTACACTTACAGGGAGCTAAGAGATTGATAAAGGACTCAAAGTCAGCTTCTAGCGTAACAGCTCTGCTTTCGGATAATTAATA-TATATGTGGCAAATATGTTCAATCCAT-ACTCCTGGATCCCATTCTGTTTTCCTCATTTTACTGGATATAT-----GTTTTTAGTGTGCATCTTCTCTTGCTTTGTTTTAAGGAGACATATAAGAAGCTGGTGCTAATGAATACATTATAGAATGTTCAGGAAATAGAACACAATGGAAATATTATGAATTATATCCTTTGATATAACCATATAATTTTAAACATATATTTCCACTTTTAGaaaattattatacattatattaatataaatGTAATATCTCAGATT a score=6516 s hg19.chr6_ssto_hap7 3959225 191 + 4928567 CAGAATGGACCTCAAAGTGCAACTATACATATAAATTTCTGCATT------------------------TAA-------------------------------------ATGCTACAATGA---------------------AAA---tgagcattttactttgttctcagaattgtactaagggatttctatacttcatattt-tttttaattcccacatcagctcagtaaaataaacacccttttcatgcttacaggtggaaagagtaaaatgat s canFam2.chr12 5169983 275 + 75515492 CAGAATGGACTTTAAAGGACAACTATCTATCTAAACTTCTGCATTAATTCACATTCTACCACAGTCTGATAAACAGTCCTTTATGGACTAGTGACAAACTATGGATACCATGTTGCAATAACATGACTAATATTTACTAAGCAAATTttgagcattttgctttgcacccag-attataa-aagggctatttatacatcatatttatatttaattctcacatcacctcagtgatttgagtaccctttgcatccttatggatggaaagaataaaatgat a score=3677 s hg19.chr6_ssto_hap7 3959421 67 + 4928567 taaaacaacttttgcaaagatataaagctagtaaatggtacactataggttgaaccAAATTATATAC s canFam2.chr12 5170466 67 + 75515492 taaaaaagctttggcaaggacacaaggcaagtaaatggtgtattccagattgagccaagttatatgt a score=17947 s hg19.chr6_ssto_hap7 3959976 531 + 4928567 CCCCCTCAAGCTCAGCCACTATATCATACTCCTTCACATTCTATTT---CTGAGAACAATGTCCCTTGTATTAAAATTATTTGCATCCCTTTAATTTATGGATGTGCATAGCAATAAGACTACTTCTTTTAATGAACG-GCAGCATTATACAATTGGAGGAAGATACTGTGTAGCAATTCTATTTCTTTAAAAGGATTCCTCTCATCATCATCCTTACCCTCCTCTTGAAATGGCAACATTTGCATTTATCTTATGTGATGACACCCATAGCTTCTGAAAA--GTCTCCTTATTAAAGGTAACAGTGACCTCAAAATTCCCAAATAGAAACTATTTCTCAGAATTATTATTT-AGATTTCTCATCATAAAGTAGT--AAATTTGATCA--TCATAAAGTAGAAGAAAAAAATGCCTCATTTACTTTGGAAAAACACACTTCTATTAATATACAAAGTTCAAAATCTCTT---------GGGTAAAA-TCACTATTTTCCCTGGATTTGAGAATAAA--------CTAAGTCCTACTTTAGATTTCTTACTACTTTAGATT s canFam2.chr12 5170541 558 + 75515492 atcccacacgtccaaccattacaccTTACCATCTCACATTTAATTTATGATGAGAATAGTGACCATTATGTTAAAACTATTATTGTCACTTTAATTCATGGTTATGGATGTCTATGTGACTACTCTTTTTAATGAATACAGAACTTTATATAAATTGAGGCAATTCCTCTGTGGTAATTGTAGTTCCTCCCAAAGATTCCTCTCATCACTATCATAAACATCTTGTGAAAATGACAAACCATGCATTTATCTTATGCAATGGCTCCCAAAGCTCCTGCAAATGTCCTTCTTATTAAAAATAACAGTGG-CTCCAAATTACTAAATAAAATCTATTGTTCTCAATCATAATTTCAAATTTCTCAGCATGATTTATTACAAATTTAAATAAGTCA-AGAATAGATAGAAATTTTATCTCATATAGTTTGGAAAAATGTATTTCTGCTAATGAGGAAACTTCAAAGTATCTTGTACAAGTGGGATAAAAGTCATTGTTGTCCCTGGATTTCAGAAGAAAGTATGTTCCTAGACCCCAGTTTTAATTCAGTTCTATTGTAAGTT a score=10576 s hg19.chr6_ssto_hap7 3960644 252 + 4928567 GAATAAACTAAAGGATTATTAAAAAA----TAATCCATATGATACCAGTACACTCAGCCCAGTGCAATACAAATTAGTGTATTTTGGTAAGAAAGACTTGTTAATAGACATAGCAATTTTTGGTTATA-----GACTCTTCTGGTACTTGGTAGTATGGGCTTGTACATACATAAAGCTAGGCCCCTAAGATTTTTGGGTAATTACATGTCTCCAGTTTGTTGGAACTGTCATGCTGTCTTTATCAGTTTCCAAAGGAACT s canFam2.chr25 47376956 257 + 54563659 GAGGAAATTGAAAGATCATTAAATAAAAATTAATCCAGTTGATACCAATAGGTTCATCTCAATGTGTTACCAATTAGTGGATTTTGGTGTGAAATACTTTAAAGTAGACATAAGAGCCTTTGATTATAAGGCTGCTTCTAGCAGTAGTAGGTATTATGGGCTTATACATATATAAAACCAGA-CCTTATGATATTT-AGTAACTACTTGTCT--AATTTGTTGGGATTGTCATGCTGTCTATATTAGCTTCCTAAAGCACT a score=2907 s hg19.chr6_ssto_hap7 3963267 65 + 4928567 TGGCAAAGAAAAGTAATTCTTTATCAATAGCATAC-------------TGAAATAGGGTTAAAGGGAGCACTTTCAAA s canFam2.chr12 5171235 75 + 75515492 TGGCAAAGAAAAGTAATTGTGTGTCAAGAACATACATATTGAATATATTGAAATA---TCAAAGAGAATACTATCAAA a score=6843 s hg19.chr6_ssto_hap7 3963332 166 + 4928567 ACTTGTTCCAATCCTTTTATTATCACTATGCAATGCTTCTGGAATATACTGCATAGGATTCTTTCTGTACTATGGAATTTTCTAAACATTCTGTGGGGACCTTTTCCATGTACTTACTGCTTCAAGTTTCTTCAAATAGTGA-------TTTTTCTGAATATACTATACTATT s canFam2.chr12 5141552 172 + 75515492 ATTTTCTACCATCATTTTAATATCACCATGCAATGCCTCTGGAATAGACCCCATAGGATCTTTTCTCTACTACGGAACCTTGTGAATGTTCGAAACAGATATCTCTTCTACACTTAGTGCTTT-GGTTTCTTCAAATTGTGATTGTGATTTTTTTTTAACACAATAAACTATT a score=3223 s hg19.chr6_ssto_hap7 3963536 74 + 4928567 GGGAGCTAGAGGATTTATGTGATCCCTGCATCCTGAATAGTCTGAATGTCGAATGTATCATATAAGCTCTGGAA s canFam2.chr12 5141769 74 + 75515492 AGGGACAAAGGAATATATGTGATCCTTTCATTCTGAAATTTGTGAATGTTGAATGTATGTGATAAGTTCTATAA a score=9489 s hg19.chr6_ssto_hap7 3964438 274 + 4928567 TGTTGGGAGACATCTACTGGGCAATGGGTTCAGAATAGGTTTTTGGTTCTTGAGTCTACAAGTCAACAACATATCTGTATCTTCAGTAGAGTGAATCTGAAACCCCAGGGTTTGGCCTCTGAGAATGGGTGAGACGGAGAGGAGAAATAAGGGGTAGACTGGGGAGTAGAATG------AGAAGAGGACCCACAAATATGACAAGATTTACATATCATCATTGCTCACTCCAGACTTAGTGAGGAATGAGATCAGACACTGAAGATTGACATTGCCTGTT s canFam2.chr12 5142154 265 + 75515492 TGTTGAGAGATCTCTGCTTAGGAATGATTTCAGAATCTAGTTTTGGTTCCTGA-TTTCCAAGTCAGTGATACATGTGGATCTTTAGTAGAATGAATGTTAAAGCATAGGGTTTAGCCGCAGCTAATAGGCAAGACTGATG------ATGGGGAGCAGAT--GAGAGTGGAGTGGAAAACAGAGGAGGATTTACA--TGTTACAGGATTTACATATCAATGA----CACTCCAGATTTAACGGAAAATAGGATAGGACACTGTGGATCAGCATTACCCATT a score=11677 s hg19.chr6_ssto_hap7 3965167 299 + 4928567 GCCTTGGATGCCTGTTTTATTACCAGGAAAACAGTCTGACTTGTTACTGAAACCATCATATATTTGGACATGTATATTTAAGTAGAAAAACTGAGTAA----TGGGAA-CAGGGGCAGGATACAGCATTAAGATGAG--AAGAGAATATTAGAAACACAGTGAGCTATTGCTCATTTATCTGTAAAAGTATGA--TGATACTTATTTCTAAAACTGTTATTAGAACCTACCACAAACCATAAAGATGAATTATCCATAACAGTGTGATAGACT-GCAAGT---AAATATTgagtta-----gatttggatttcatct s canFam2.chr12 5142430 314 + 75515492 GTCTTTGATGCCTGTGTCATTACTAGATAAATGGTCTGACTTATTCCTGAAACAATCTTGTA-TTGGATATGTATCCCCGTGCAGAAAAATCAAGTAAAAAGTGGAAAGTTGGGGGAAAACATGACATTAAAATAGAGTGAAAAAATGTTTGAGATACAGTGAGCTCTTGCTTACTTCTCTGTGAAACTATTACTTGAAATTTATTTCT-AACTAGTTACCAGAGCCTACCCCAAACCATAAAGATCAATTATCC-Tgatagtttgatagagtagcaaataccagatgttgaattgacgtcaacttgggcttcatct a score=12521 s hg19.chr6_ssto_hap7 3965721 444 + 4928567 ACCTTGTAAGACTTACCAACAAATAACAAGTTTCTCTA-TCTATGGTTTAGAGAATCCAAGCAGAATTTTGAAAATATTATGGATAGAATAGGCATGAATGTTT-TGTAACATATCTACAATTTTAATATAAAGTAAGTAGATGAGCAGTAGAAAATGCAGTCAAATGTAGAAAAATATGGAATGAAAAAGCAAAAATAAATCCATATCATTTCATGTAACAagacctttttttaa----------------agtagatttaagtgtacacaaaaattg---------cagaggaatttcagggagttcccatatcccctcctccctaaaacagccctctgctcattttctcctattattaacatcctatttgagtgtggtacacttg---ttac--aactgatgaaccaatactggtac-ttattgttaactgaggtccatag-ttaaattagggttaattct---tattatatagttct s canFam2.chr12 5144099 459 + 75515492 ACCTTAAAGGACTTACTAAAAACTAGCAAGTTTCTGTATTCTGTGGCTTAAAGAATCAAGGCACATCTTTAGAAATTT------GAAAATAGTCATAGGTGTTTCTTTTATGTAACTCCCATTT---TTTACCATAAATAGGTG-GCAATAGAGAATACACTAAAACTCAGACATATGTGGCATAAAAAAGAAA----ACATCTACAACCTCCCATATAAAAAGACATTTTTTGAATactttacctttaatgagcagttttaggttcacagaaaaattgggcacaaaatacaagagttcctgaatatccccatctttccccctccctg--------ctccatacagtttctcccattattgacacttggcagcagggtggtacatttgatcttaccacactgatgaatcaacattgatacattattatttacagatgtctatagtttagaatagggttcgttctttgtatgatataaatct a score=311 s hg19.chr6_ssto_hap7 3967023 6 + 4928567 ctatga s canFam2.chr12 5144558 6 + 75515492 ctatag a score=4830 s hg19.chr6_ssto_hap7 3967967 178 + 4928567 taaaataaataGATGAACAATAGAGAATAAACTCAAACTCAGACAAGCATAGAATGAAAAGCAAAACTAAATCCATATCCTCCCATGTAACAAGACCAtttttaa-----------------agcagttttaaggt-ataaaaaattttcagagaaaatttagggagttccccatacctccttccctaaaacagcc s canFam2.chr12 5144219 192 + 75515492 TACCATAAATAGGTGG-CAATAGAGAATACACTAAAACTCAGACATATGTGGCATAAAAAAGAAAAC---ATCTACAACCTCCCATATAAAAAGACATTTTTTGAATactttacctttaatgagcagttttaggttcacagaaaaattgggcacaaaatacaagagttcctgaatatccccatctttccccctccc a score=52277 s hg19.chr6_ssto_hap7 3968867 1606 + 4928567 tttgccttttccacagtgtcatatagttgtaattatacagtatagagctttttcaggctggc----tccttccacttagcaatatccctataggtttcctccatgtgttttcataacttgatagcttatttctctttactgttgaataatactccacggtatggatatatcacaatttctttatccactcacctgtt-gaggacatcttgggggcttccaatttttggcaattatgaataaaactgccataaacatccatgtacaggtatttgtgtggacataagtttttcagtcatttgagtaaatactcagaggtgccattgctggattatatggtaagagtatgtttagctttgtaagaaacagccagagtg--tcttccaaagtggctgtactgttttgcattcccaccatcaatgaatctgagtccctgttgttctacatc----cttgccagcattcggttttgtgagagttttggatttcagccaAAAAGAAAAATGCtttttaaaaactttttacttggaaatcattatagagtcacaggaaattgcaaagatggtacagatgacacgtgtgccc-tttcacccagtttttccaaatgtttatatcttaagtagctctagcacagtagcaaaaccagg----actttggtagaatatgtgtccatagttctatgcctgtgtcttatcatatttgcagatttatgtaaccacca-tgcaatc-----tagagctattccatc-ccacagagatctcccctcatgctgcccttcagagtcaca--ccctactccctacacaccatcaccctgacaactaaaaaccactaatctcttctccaccaatctctataatagtgtccttttgaaaatgttacgtaaatagaatcacacagtatgtgacttt-tgtgacgggcattttcccctcggcgtaatgtccttgagattcatccaagttgttacatgtattaacaatttgctcttttttattgctaaggaatactccatcagaggaaggcactgcagtttaactctttgcctgttgagggatattttggctgtttctagttgtggggctattacaaataaagctgttatgaacatttgtgtaagatttttgtgtgaacatgtgtttttgtttctctgatataaatgtgtcagaatgtaattcctgactcatatggcaaatatatgtctagttcttcaagacattgactc--actatttttagaaggactgtaccattttacattctcaccatcagtgtatgagaaatccagtttttctgcattctcaccagcatttaccattgtcagttgttttaaaattttagctgtagtaagaagtgtgtagcactattacattaagtccttaatttgcatttccctgatggctagtgat-ttgcatgtcattcattgtgcttatttgccatgtatatatatcctctttgataaaatgtctcttcatatcttttgcccattttgaaattaaattttatagtttgcattctactatagattttatattagagcttttatagttgatcgtatgttctagatac-------------------tgtattcttggtaatgtatgtggt-tttaaatattttctccataactctagcttgcttttc---------------atttctt s canFam2.chr12 5144564 1560 + 75515492 tttgccttttccagaatgtcatatagttgaaatcatacagtg-agagcttttt-agtctaacatgattctttcatgtagcaatatgcatttaaggt--caccatgtcttttcaaagcttaatagcttttttcaa---attgctgaataatacttcattgtatggacgttccacag----tttatcaatccacctgtcaaaggacatcttggttgtttccaagtttc-----------acaaagatgctataaacattcctgtgccagtttttgtggggacatatattttcaactca-ttgagtaaatac-caaggaaaacattgctggactgtaatataggagcatgtttagctttgtaagaaatcaccacagtgtttcttccaaaataattgtaacattttgcattaccatcagcaaggaatgagatgccctattgtactgcattctggcttgctagcatttggtgttgtgagggttcttgattttaccc----aGAAGTCCACCTTAAAAAATTtttttaatttgaaataattatagattcaccagaacttgcaaagacagtatagatagaccctatgtacgtcttatctagtttctccaaatgattatatattaaa-aattataataccatatcaaaaccaggaaacatattggtaaa-----------------tgtgcctgtttcctcccatgagtac--atctgtgtgaccaccaccatagtcaggcacagaactattccattaccagagagttct-ccctcatgctgccctttgtattcacaatcacttctcttcagaccccatcac--------ctaacaactgctaatttgctctcc----atctctataat-ttgttattttgagaatgtcaaatagatggaatcattgagtatgtggctttctgagcttggcctctttcaattagcataatgccctttagatctatctaagttgttgaatgtacccacaattt-ttcctttttattgctgagaggc-ttccatgatatggacacact------------------tgttgcagggccttttggttgttcctagtt-tagggcaacgacatttaaagctgctatgcaaattagtgtac-agttttgtgtgaacatgagttttcatttttctgacataaaggccatgaaatgtgactcctgggacaggaggtaagtgtatgtttagtt-tttaagagattgccccaaactatctt-------------ccatttcacatcc---ccatcagtgcaggagacatccagcttctctgcattctcatcatcatttgaccttgtca--ttatttcatattttaagtgcttcaataggtgtatagcgatgtatcagcatggtcttaatttgcattttcctaatagctagtgatgttaaacatcattcaatgagcttattttcca--tatgaatattctttctgat-aaatgtctctttgtgtctttctcccattttgtaattagagtaggt-gtgtgtgtgtgtgtat---ctttactgtggagacttgggagttctttattgattctagaCAtatttgttatgtttgttaaatttgctctttgttatattttggatgtttagatattttgtctttgtctatatctaaccttttcagtctctcaaaaggatttttt a score=5019 s hg19.chr6_ssto_hap7 3970473 189 + 4928567 agcaggacaccttacagaacaaaagttttcaattttgataaagcccaatttattgattttgtttgtttatttgtttgttttttgttttttacacatagcacttttggtgtcatgtctaagaactcagaactcagacccccggccctagctcctgatgattttctcatgttttcttcgaaaagttttaca s canFam2.chr12 5146362 150 + 75515492 aataggatatttttcagaataaaagtatttaatttttataaggcccaattcattga----------------------tgtttctcctttatggatcatgcctttgatgttctgtctaagtagtc----ttca-----ccagccc--------aaaaatttcctgctgttttcttctgaaaattttaCA a score=18797 s hg19.chr6_ssto_hap7 3970718 677 + 4928567 tttgtttcttgcttctttttcctttgagttcttttttgtttttgtttggttttgtttggttttgtttttgtctatggatttccacttt--------------------ctcctagactattgtttgaaaagactatagactatattatctccattgaattattttgcatcttcatcga-aatgagttggcataagtgtttttctggattctccatactgctccaccaatctatgt--ctatccctgtactaatgtcaatcaatattattatagt---------tataaaaattctgaaatttggtt---acagtt----aattctcca--tctctttttccctatgaaattc-gtttgaccta--tactagttcccttgcttctccataaacattttagaacaact-----------------------------------ttgtctacaactattacaaatcttgctg------gaatttagagagaaattgtgttaaacctgaatatcaaattgggt-agaattgacatctttcttatatttagttttctagttgatgaacacagtaaatctctcaatttctttagattttttaatttctttatcagcatttcagcatatcgactgtgtacatgttctgttggcatacttatgagg-----------------------------ttttttgagtgaagctaattcatgttgtatttttaatatttgttttgatttgtttattactgtatattccaataaaattgatttttt-ggttgatcttgaattctg s canFam2.chr12 5146651 762 + 75515492 TTTCCTTTTGTTTTCTTTTCCCTTTGA------------TTTTGCTTG-------TTTGCTTTGTTTTTGTCTATGGATATCTAttttgtctatggatatgaaatgtgttccaacaccattgtttgaaaagattatg---cata----ctccattgatttgcactgcacccttgtcaatagtgagttggtgtgggtctatttctggactgcctatactcttccatcagtctatgtgcctgtccctcca-taatacccattagtcttgatatcataagtatgtatataaaggtttt-aaatctggctggcacaattattcaattattcaactttatttttctttatcaaatttagcttcatctcattcctaatttcattgctttttcatatatattttaagatatttaagatatttaagataactattagaatttagaataattatctacaaccattaaaaatttagccgagatacggatattaatattaattgcattaaatggggatatcaatttgagtgagaattgacatctttactctgttcagtttttcaactgatgaatatggtaaatatcttcatttatttagaccttcgatttctttcatcagcatttcag-atagaagtcctgtgcacactctgttggaattcttctttagtttttctgtgcttttccttacttttttttttttttgagtgattttaa-tagtattgtatttttaatttttgtttt-acatcttccttactatatatagaaaaacaatagtttttttctgctgatctttaatcctg a score=5667 s hg19.chr6_ssto_hap7 3976896 192 + 4928567 AAAATAAATGTATAGTACGTTTTGGGACCTTAAAGAGCTAGTCATTCTTTATTCTACCTTTTTTCAAAAATTTCCTGGAAAATATATTTAT-CTCATAAAATAACATGTCAGCATGCTTAATTGAGTTCTAAAAACAA----TCGTTT---TTGCTTGCTTTTTTGTTTTATTGTAATTGAGTTAATGGCTGACATTTta s canFam2.chr12 5152659 185 + 75515492 AAAATTGATATATAACAGGTTTAAGCATTTTA---------TCAAACTTAACACTTATTGTCTTTGAAAATTTTCTGGGAAATATATTTTTCCTTATAAAATTAAGTATTAACATG-----TTAACTTCTAAGAACAAATAGTCCTTTTGCTTAGTTGCTGTTTTTTTTCATTATAATTGGGTTTATAACTG-CATTTTA a score=28171 s hg19.chr6_ssto_hap7 3977180 1050 + 4928567 TCATTCCAatatgtg-agaaagtgggt--actgggaaaactctggaaacagtttagttgctgcttataaacgcacacaggaaaatgtagtatctttttcctgcatttgaagttgttgtgaaagaataagaaacctaaagctgctgcgggggtcctcctaccatctcaggaaagctgacatgctgtgtgtgatagagagatgagctatgaagtcccaggatcactggtgatgccactggcctgctgagttgagcaaacctggagatgcccagccttggatctattggctatgtgagataatGGGTGAAAGAAAAATACACCCCACTAGATCAGATTTCCTGCTGTTCACAGCAGAAGGCATCTTCATTATAATATTCAACCCACACATTTTAGTTCTACCTTATAATTCCACACCACAAGTCTCATAT-GAATGAGACAAATCATTTTCTCAACTTAGGGAACAAAGTCTTATT--TGTTGCAACTCTGGGATCAAACAGA------------------------GCAGACATAATTATCAGCTTAATATATTCTTATAGGTTTTATATTCTTATAGAATTTATATGTACCT-TTACACACCTGGTATGTATGTACAAGTAACATGTAATATAACTAAAAATGAAATATGCACAAAATATACACTGAATTTGATTGAAAATAAAATAACAGTTGTCTCTGACGGTAGAAAAATTATGCTCAAATG---ATTATGTTGAAATAAAATT-TGAATTGATTATGTACT-TTTAGATTTGACATA--TTTGATACTGACTCT----CAGAATACAATGG-AGAACCCTCCATCTTCTAAATTTGTCT-------TTCTCTGAAATCTGTACAAGTCCTTTGATAATACCATATAATTGAAATCTCTGGAATGAAAAACTATATACTAATTTACAGTTATAGACACACAATATTGTAGACGGGGTTGAGAAAGAGTTCTGATTGACTTGCTAGCTGGTTT--ATCATCTCATGTTTGCCAAGTTTGTTTCAGTTCTTATAGTCTGTTCTCAGTTTTTATGCATCACCTTTTTAAACGTTAGGTTTACtttttaaattgacaagtaaaa s canFam2.chr12 5153115 1010 + 75515492 TCCTCTCAATGTGTGGAGGAAGTAGgtctactgagaacact-tgaagaaggtttagttctcccttataaaaatgtatgaggagaaactgttcccttttcctgtctttggaa--gttatgaa-gaaaatgaagcctaaagctactgcagccatcctactaccatTTCAGGAATACTGACTTGTGGTGTATGATAAAGAGAAGAGATACAAAGTCCCAGGATCACTAGCAACACCATTGGCCTGATGAACTCA-CCAGCTTGGAGGTTAACTACCCAGGGTCTATCTGCTACGTGAGACAAGGAGTTAAAGTCAAATAAAGCCAATTAAATTGATTTTTCT--CACTAGCAATAGAAAGCATCGCCACTGAAATATTCCTGCCATACTTTTAAATTCTACATTATAATGTCACACCATAGATCTCAGATAAAATGAGACAACTCATTTCTGCATCTTAAAGAACACAACAAAAGTAAAGTTGCAACCCTGGGATCAAACAGCATCTGATTAAACCATATAAATATTGAACACATGACTGTTAGCTTATTAAATTCCCACAGG--------------AGGAT-------AACCTGTTTCACAC----------------ATTAATGCATAATAGAACTA------TAATATTTGTAAAATAAACTTTGAATTGGTCT---------------GTTGTCTCTTATAGTGGAGAAATTGTGCTGAAATAGCTATTAACTTGAATTGAACTTCTGAATCTATTGTCTACTCTTTAGATTTGATTTACTTTTCAAAATGACTTGTCGACAGATTATGATAGCAGAACTCATCATCTCCTTAACCAATTTAGGTGTATTCTCTGAAACCTTTCCAACTTTTTT---------ATATTATTGAAGTCTATGGAATCTAGAACTATATACTGATTTACAATTATAGTTCCACAGTGT------CCAAGCTCCAAAAATACTTGGTTTACTTTTCTAATTTGTTTCCATTATGTACTTTTTGTCACATTTTCTTCA-TCACTACAGTTTGGTTTTAATTTTTACATATTGACtttttaa-----------attttttaagttattatataaaa a score=20685 s hg19.chr6_ssto_hap7 3978299 692 + 4928567 tatttaacatatgcactatct-cacatacttatGACATATCCATGAAAACCATTATTCTATCGGGAAATAATCTTCAC------------TTTTTCTTTTCTTTTTATTTTTTGTCCTTGGGGCCAAATGAC-CAGACGATTTTTAACTCCA----TGTTTGAGAAACATTTAATAATGTAATGTGTTTGTGGCACAGCAGGAGTACAGATGCATGGGAGGCAGGAAGCAT---TAGGTAAAGGGGAGCACAAAACTTGGAAGATGAGGGGCTGCCATTAATGCTGGGACTTC-AGGCCAAAGGTACGAGCTGAGGCAGCCACAAGGGAGGACATTTTCTGCAGAGCTGCTGAA-CCAGTAGCAACCAGGTCCGGAGAAAGGTCTCT-CTTGTGGAAGAATGAGAGCCAAGCGGGGAAGTGTTTCATCCTGCAAAG---CTGGGGCAGAAGGTTCTTCCTTGAATGTGGTCATCTTCACTTCAGCTCAGGAATCCTGCAGA-GACGCAAGAAAGTGTTGTTTTCAGACCTGGCTCTACTAACAGTTTATTTTGCCCTCTTTCAAGGACTCAGATGAGAGCACTGCAGGAAGAAGAAAAACAAGTTCTGAAGTCTCCATGAGTCAATACTCCTGCAGAGCACAGGCCTTTT-CTAAGTGGAGAGGAGGAGTTCTGGTGTAAATTGCCTGATCAGAAATTTGGATCCAATGTCTTTGCTATTA s canFam2.chr12 5155183 699 + 75515492 TATCTTTCAGATGCA-TATCTGAACAAAATTTAGGAATATCAATAAAAACCATTATTTTTTTGTGATG-AATCCTCCCATTCTCCCTCTTTTTTTTTTTTTTTTTTACTTCTCTTCCTTGAAAACACATGAAGCAGATGATTTTCAA-TCCACATTTATTTGAGAAAAGTTTA-TAAAGAAACATG-----AGCAGAAGGTGAGTTCCCATGCAAGGGAAACATAAGGGCTGCATAGG-AAGAGGAAGGAGAGAAT---GCAGATAAGGTACTGCAGTCAGCACTGGGGGTTCCAGGTCAAGGACA-GGGCAGAGGGAGCCATTGGGGAACACAAGCTGTGCAGGGTCACTGAAGCCAGGGCAAACCAGATCCTGAGAAAGCGCTGTATTTGTAGAAGAATAAGAGCCAAGCTGGAAACCTTTGGACTCTGAGAAGAAGCTGGAAAGGAAGGTTTTTTCTTGAGGGTCACCATCTCCACTTCAGCTCAGGAGTCCTGCAGAAGACAGAGCAGAGTATTGTTC-CAGACCCACCTCTATAAGCAGCTTCTTCTCCTCTCTCTCAAGGCCTCATGTCAAAGCGCTGCAGTAATTA------CATATTTTTAGGTCTCCTTGGGCCAGAGCTATTTTACAGCGCAGGCCTTTCACTAAGTGGAGAGAGGTAGCGTCAGTATAAACTGCCAGATCAGAAGTC-AGATCCAAAGTCTTTCCCACTg a score=1350 s hg19.chr6_ssto_hap7 3978992 51 + 4928567 TTCTGTCTCAT-------GCCTTATTACCTCTACCATC-ATTCTAGGGAAAGGAAATCT s canFam2.chr12 5156078 59 + 75515492 GTCTTTCCCATTATTTCTGTCTTTTCACCTTTACTATCTGCTCCAGGATAACCAAATCT a score=79277 s hg19.chr6_ssto_hap7 3979361 1767 + 4928567 ATCTGTTTCTTAAAGAGGATGAAAAGGTATTACCTGTTGGCTGAAGTCCAGAGTGTCCTAGGAAAAAGA---GAAGATATACACTTAAAGGATATGGAAGCAAATCTGTCCTCCAACACAATGTCCCAGCTCCAGATCTCCCACCTGAGAGTTCTCTGACACCACAACCCACACCA------GCCAGGGCAGAGAGGAGCAGAAACAGACCATGTGACCCATGAAGTGTGAAGTGTCTGTCACA-GGATCCAGTGTAATTGTATTAGCTTTAGTTGCTCTTCCTTAATTTGCTCCACGATCTCAACCAAAGCACCT-ATACCTGTTAATCTTTCTGTTATCTCTGTAGGCCACAAG--CTATTATGCTTTGACATAGCAACCATGCACTGATGATTTCTGGATTTGCAGAACATTGGAGGTCATTTGGGAGTAGAGAGGCTTTATCCAGGGCCATTCATATGCTGAGAACCAACTTCAGCAAAGCCATAGTTCCTCCTCCAGAAAAGCGTATGGAGACAGCCAGCTACCAA-AGGCTCCTCACCTTTCTGATTCCTGAAGTAGATGAACAGCCCGGCCCCAAGGAAGAGCAGGCCCAGCACGAAGCCCCCGACTCCACTCAGCATCTTGCTCTGTGCAGATTCAGACCGTGCTCCTGAGAGAGGAAGCCAGGTTTAGTGATTTTTATCCCAAATGGA--------------------ACCTCTTTAAT-----TGACACC-------------TTGAGATTCAGAGCTTTGAAAATGAGAAAG-AAGGCTGCTCTGCAAGAACTAAAATAACTGACCATTTCTTGAGAAAGGTTTTCAAATCACACTGAACAGTTACAAGGTTCAGTCATCAAACTCATTCAAATATTACAGCCTTGATGTAAGACAGGACTTCAACATCTgatgaacagaaagcctgagacccaatgaggt-taagtag-ttgcctagagtgacagatctaataaaaggcggagctgagattggactccCCTCATGTCAGGAAGGTCCCTATACT-TCTCCTCTTCTCAGATTACAACAAACGACTCAGAGCAACAGTACCAGAAACTCAGTCTCAGACCCAGAGGCAG-GGCCTGGAGCCCACAGACAGCAGGTGACCCCGACTTGTGACATCATGGGGAGGTTCAAAAGAGGGACAGCCTC--TCCTGCCTGGCAGGCATGACTGCTTCCCCAGGGGGTACAGGTGTTTCTAGAAAGTATTACAGG------------------------------GCTACCCCCCAGTGACCTGTGCTGATGGAGATGAGAACGTGGAGCAAATGAAAATAGGATGTGGGATAGGAGAAGCCTGATACTCAGGGATTAGTAAAGTTCGCGTCTTGGTGGGTGAGAAATTTATGAAGTCAGAAAGCTGCTCACTCCATTCCACTGTGAGAGGGCTCGTCAGGCTTGGGTGCTCCACTTGGCAGGTGTAAACCTCTCCACTCCGAGGAACTGTTTCCAGCATCACCAGGGTCTGGAAGGTCCAGTCTCCATTCTGGATCAGGCCTGTGGACACCACCCCAGTCTTCTCTTCCTGGCCGTTCCGGAACCACCTGACTTCAATGCTGCCTGGATAGAAACCATTCACAGAGCAGACCAGGAGGTTGTGGTGCTGCAGGGGCTGGGTCTTTGCAGGATACACAGTCACCTCAGGATAGACTAGGAGAAAACAAGGTAGAGGGAATAAGTCATG----CAGACAGAGTAAGTCTCCTTGTTTAGCTTTTTGTCTGCTTC---TCTGTAAACCTAGGCTCTGGCCTTGAGCAGGCCTCCAGCACAGCTGGCCATGTGGCCTCA-------CAGTGTCATCAGC s canFam2.chr12 5156137 1826 + 75515492 ATCTGT-----AAAGGGGATGAAGGAGCATTACCTGTTGGCTGAAGTCCAGAGTGTCCTGGAAAAGAGAAGGGAAGACATAGACTTAACAGATATGGAGGTAAATCTGGCCCCATAGACAAGATTCCAGCCCCAGACCTGCCTCCTTAGATTTCTCTAACAGCCCAACCCATATTGCATGATGCCAGGGGAGAGTGGA----AAGTGAAAGATATGACCCATGAAGTCT-------CTGTCACACAAATCCAGTTT-----CATTAGCTTTAGCGTCTCTTCCTGCATTTGGCCCAGGATCTCAACCCAAGATCCTCATGCTTGTTAATCTCCTTCTTAGCTCTACAGAACACATGACCTCTTAGGCTGTGACACAGTAACCATGGACTGCTGACTTCTGGATTTCTAGGGAATCTGAGGTCAAATTGGGAAAGAATGGCTTTATACAGGGCCATCGGTACACAGAGAGCT--TTTGATCAAAGCTGTATTTCTCTCCACATA---GTCTCTGGGGAGTCTCAGTTACCAACAGGTGCCTTACCCTTCTGATTTCTGAAGTAGATGAACAGCCCCACTGCAAGGAAGAGCAGACCCAGGACAAAGCCCCCGATTCCACTCAGCATCTTGCTCTGTGCAGAATCAGACTGTGCCCCTGAAAGAAGAAGC-AGTTTTAGTGCTTTTTACACCAAACTGATGGACACTGGGATTGAGAATGTCACTTTAGTGATTTTTACACCAAACTGATGGACACTCAGTTTGAGAACTTTGAGAATGAGGAAGGAAGGCTGCCTTGGAAGAAGTAGAATAATTAGCAATTTCTGGAAAAGAAATCTAAAATCACATTGAGTAGATACGAAGTCTATGCATTGACCTT-TTTAAATATCACAATTCTGACA-AATCCACTACTTCAACAtct-atggatgaggagcctgggactccgtgaagtacaagtagcttgtgcagggtgacagagctaataaaagg--aatccaagattggattccCCTCAAGTCAGAAAGGTCCCTACAATGTAAAGGATTCTCAGATGACAATGAAGAACTCAGAGCAACAGTGCCAGAAGCACAAGCCCAG--CCAAAGGCAGTGGACTGGTGCCCAGTGTCAAGATGGAACTCTGACCTGTGA-ACCATGGAAAATCTGAAAACATGGATAACCTCCTTTCTGCCTGCCACATCTAACTGCCTCCCCAAAGACTGCAGG-ATCTGTAGAAATAATCACAGGATATCTTAAATTATCAGAGGACATCACTCAGCTACCCCC-AGGGACCTGTGCTAA-ACAGAAGAGAATACGGAGGAAAAGAAAATATGGTATAAGGAGAGAGAACCCTGACACTCAGAAATAAGCAAA-TCCCCTCTTTGGTAGTTGAGGAACTTATG---TCAGGAAGCTTCTCACTCCATTCCACGGTGACAGGGCTTGTCAAACTTGGGTGCTCCACTTGGCAGGTGTAGACCTCTCCGCTCTGAGGAACTATCTCCAGCATCACCAGGATCTGGAAGGTCCAGTCTCCATTACGGATTAGGCCTGTGGACACAACCCCAGCTTCCTCTTCCTGGCCATTCCGGAGCCACCTGACTTCAATGTGGCCTGGATAGAAACCATTCACAGAGCAGACCAGGAGGTTGTGATGCTGCAAGGTCTGAGTCTTCGTAGGATACACAGTCACTGTAGGCTCGACTAGAAGAGAA-GTGGTAGAGGGACTCAGTGAGGAAGACAGACAAAGCAAGTCTCCCTGGTTGGCTGCCTTGCTGCCTCCAGTCTCTGGTCACAGGCTGC-ATTTCAAGCAGGCTTCCCTCAAAACTGACCATGTGGCCCAATAAGGGCCAGTGTCATGAGC a score=10287 s hg19.chr6_ssto_hap7 3981128 365 + 4928567 CTGGAATTTAATCTTTATAGTGGGGACCCATTAGATTTGAGAGATATTGTGAAAAATTAT--GTTTGGCTCTTCATAGCTTGAAATTGACATGCATTG--TCAAAGCGTTTACAAATCTTTGAAAGTACAGagtgtg-gtaattaaaa--ctgacttctgagccaggttgcct-ggttcaaatccaaggtctgcc-ttttactggttgatcctggaagagtttttg-attcttttgtgtctcaactttctctccaataatggaggataattatattaatttacctcttgaggttatatgaggattaatgcaagtaaaatatataaaAGAAT-----GAATTACGATAGCCTTCAATTTATGAGGTCAGAAAGCTTCTCAC s canFam2.chr12 5158189 360 + 75515492 CTTGAATTTAATCCTGACTGCATGAGTCCATTAGATTTAAGTGATGTTGCAGAAATTTGTGGGGTTTGTTTTTCATAGAGTGAAACAGTTTCTTGTTGAATTGAGGTGTTTACAAATTTTGCAAGGCATATAATGTATTTAAGtaaaagcatgatttctagagaagcctgactaaattcacgtccagactctattactttactgattcatcctgggagaatttttacattcttctgtgccccagctttttaacctatcaaggaggatagtaatactaacttagctctcaaggttacatga-tactaatgcacccgaggtatataaaacaataactggaatt----tagctttcaatatatg---------------ttac a score=3207 s hg19.chr6_ssto_hap7 3981493 49 + 4928567 TCCATTCTACTGTGAGAGGGCTCGTCACACTTGGGTTCTCCACTTGGCA s canFam2.chr12 70151623 49 - 75515492 TCCATTCCATGGTGACAGGGCTTATCGAACTTGGGTGCTCCACTTGGCA a score=25951 s hg19.chr6_ssto_hap7 3981546 938 + 4928567 TTTATCATCCTTGTACACCTTGAGAGAAAAATATGATTTAAAGCAATGTGGATAGAGAAAGGGACGGAGTAGGGCACATGAGGAAACTGAATATGGATTTTTAGGAATACTACTGCCATGCACTCACACCTTAGAACACCACAGAAATGGTTATGCTCCTGGGAAGGTGGGACAGACAGAAATGATTCTCCAAATCT-----TTAAGTTCCTAAGAAAGCATGATTCCTAAAGCAGAGAGAAAGATTAAGGAACGTCATTTTAGTTTTGAAAGTTCTTATATTTACATTTAGCTGATCAATGCATCTCCCAGGCAAAACAAGTATAACTATTATTAGGCTTATCACTGTAAAATGATTTTTCT--TTCCAGAATGACATTTGGA-TCAAGGCAGTGTCTGGGACTCATTACTTGGAGTGCTTAT-GCCTAGGGAAATCCCTGACACTAGCATACTCTCAATAAATACATTTTTTTTTAAGAAGGAAGGAGAAACCTGGAGACA------TCAATACCACAAAATGGTAGACTTGAGCTAGTTTGTGAATCATTAATTAACATTTTGCaatatattttattaaataaaaatGTTCAAATTCTTAACATGGAAAAGAATTTTCAAAAT----ATACATACCACAAACTGGAGAAAATACTGAATCAAATATCAATAAAGTGTTAATAATCTTACAGTACAACAAACCCACAAAGTCACTGAGAAAAATACTA-AGCCCTAAAGATAAGAGACAATAGATCATTGTCCATTACCTACCAAATACaacaggtaattcgtagagcagagcagtaattacaactggccaataaataggtcaaaataa--ttcaaaataattacaaatcaaaaaaatataaatcaaaaattaaccagaaacatacattttcaactat-TGGTGAATGTCATAATAAAGGTC-ATCAATGGGGAAAGTGACGTAATTTGc s canFam2.chr12 5158549 891 + 75515492 cttattatCCTTTTTAA--TTGGGGAGAAAATATGATTTGAAGAAGTGTTGCTAAAGTGGGGAACACCCTAAGATAGATGGGGGAAGAGAGTAGGACATCCTGGGAAAGCCA--------CACTCACACCTTAGAACACCATGGAAATGGATCTAC-CCTGGGAA-GCAGGAAAGACAGAGGTGCTTCTCTAGGTCTGGGAGCTGAGTCCCAAGGACAGTATGAGTCCTGAAAGGGAAAGGAGCA--AAGGAAC-TCA-TTTATTTAAAAAAGTTCTTATAATTGCATTTGCCTGATTACTCCTTCTTCTTTGCAATATGAAAATATCCATTATTATAATTGTCATCATTTCATTAATTTATTAATTATAAACGGACATTTGAATTCAGGGGAGTGTCTGAGACTCATTAAAAGGTATCCTTAGAGCCTAAGATAATCCCTGACACT---ACAGCCTCCATAAATACAATTTCCGTTTTTGTAAAAGGAGAAATACGAGGAAAACCTTTTACAAACCATAGAATTATAGATCTAAGATTGATGACAAATCATTGCCAACTATTTTGTAGCAAATTTCATTCAATAAAAATGTTTACATTCCTAGCATGAAAAGTAATAAACAGAATCAAAATATAAACCACAAACTAGGGAAAATGTTGAATCAAATATCAGGAAAGCTTTAATAATCTTATG----CATGGAGACACAAAATCACTGAGGAAAAAATGAGAACTCTACAGATAATAGACAGGAGATAAT------------------------------------GTTTACAGTAGCAACAACAATTAGCCAATAAATATGTGAAATAAATGTTCGAGAACTATATAAATCAAACaaatataaattaaaaataaa----aaaGATAAATGTTTGGCAATATGG--------ATAAAAAGGTTCTAACAAAGAGGAATGCGAGGTGAATTGT a score=3173 s hg19.chr6_ssto_hap7 3983770 125 + 4928567 AAAAAGTTAG-TTTCACAGTCATTTCAACTATGTAAAAATATA-ACACTAAGAAA-ACAAAAAACTAGCAAGAAATTTATACCTA-AAGAAGCTTCAGAGGTGCCTCAGAGGTCTACTCAATTCCCCTA s canFam2.chr12 5159737 119 + 75515492 AAAACACCAGCTTTCACAATCATTTC----ATGTAAGAATACATACACTAGGAAATACAA------ATCAAGTAGCTGAGACCCAGAGGAAGCCTCAGAAAGATCAGAGAGGCCTCCGAGGTTCCCTTA a score=11702 s hg19.chr6_ssto_hap7 3984436 179 + 4928567 GCGCTCACCTCGCCGCTGCACTGTGAAGCTCTCCACAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCACCTCGGCCCGCCTCTGCTCCAGGAGGTCCTTCTGGCTGTTCCAGTACTCGGCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGTACTCCCCCACGTCGCTGTCGAAGCGCA s canFam2.chr12 5252262 179 + 75515492 GCGCTCACCTCGCCGCTGCAACGTGTAGAGCTCTTCCACCCCGTAGTTGTGTCTGCACACCGTGTCCACCGTTGCCCGCTCCTGCTCCAAGATCTCCTTCTGCCCGTTCCAGTACTCAGCCGAGGGCCGCCCGAGCTCCGTGACCGCCCGGAACTCCCCCACGTCGCTGTCGAAGCGCA a score=42517 s hg19.chr6_ssto_hap7 3984615 1692 + 4928567 CGTACTCCTCTTGGTGATAGAAGTATCTGTCCAGGAACCGCACCCGCTCCGTCCCGTTGAAGAAATGACACTCATGTTTAACCTGCTCCAAGAAACGTGCTGGGGGGACAAGAACGATCCGGTTACAGAAGCGGCCTCCGGGGAAGACACTATC---------------TGGCCCCACCCGCAACCCCGACAACACGCAGCCCAGGGGCTCATCCTCTGTCTTTCTGAGGCGGACGGGGGTCTGGGGGACCAGGTGGAAAAACTACCTCTGATCCCAAGGCTTTTGGGACCCCCTCCCTGCCTCCAGCCTGTTCTGGAGACCTCCAGGCAGGAGCTGGAG-GAGGATCCGTCCAGCACCGCAGCCCGCGCCGCCTCCTCCTGGGAGCCTCCACCCCAAAGGCA-----------------------CTTTGCTCCTTCTCTCAACCCTTTACCATTTAAA---GGCTTTACCCTTTCCTTAAACAGCACGCACCGCTTTCATCCTGT----GAACACTTCCTTAGTGATGACCTTGTGCCAGGCCTGCGCTGCCTCTAGGAATCCAAACACGGGAAAACAGACCTCTCCACTCCGCTGGGGGAGCTTTAAGAGCAGTGAAAGTGATGGCCAAAAACCAAACACACAAGAGCTTAGACAGGAATGAGAAATTTCAGAAGTGTGGAGTTCTAGAACAGAGAATAATAGGATGATCTCAATTCCTTTAGGGTGCCAGAGAAG-AGT--GACAGTTAC---AGATGTGACTTAACAAGTTAAGCAGGTGT-----------------------------GAGCCAGGGGGCAGAGTGGAGCCTGTGTGTCTGTTTGGACAAAACCggaggcacatttcaggtttagg-aaatccca-tgtacaaaagcttgaattga-tgatgaa---cttcaaaaaactagaacaa--agttcactaaagcagagaggctgaggggaaggagggtaaaaggttagattggagaaatcacaagaagtcaggtgttgaaaagcctcgtgagtggtgttaggattttggatt---tactaaagacaatgggaaagtattgaagagttttaaggagaataaaactatgatcCTCGTAAATGTCCACAAACTTTCAGTTGCATTTCTAAATCCACAAAGCTCAGAAATTCAG----TTAAAAGAAATTTGTTCCCAAAACTCATTTGGCAAATCTCATCTGATAAGGGTAAGTGGTCAAAGGTGTCTCAGAGCTCTTATTG----GTGACATGTGCTTCTGTAGTTTCAATACATATAAACATATGTGCATA------TATGTGTGTAAATATACacctatgtataacactatgtacatatttttgatgtttttgtctttatgtttggttgaagt-------------------------------gtgaaaatgacaaaaataacttaaaaataatcctgtgggtaaaagtgaaatgaataaatagaagcattttacattgtgaataatatcaaatgtagaatcactacagaaatctgaggcatgttagt-gaaaaataattgcagcagcatcactatttgtgacttagaagggcaaactgttgaaagttaatagagatagtgctgaccaacaacttatgaaaatgttgaacaatattgcataaggcaaaaaataaatatgaaaatgttgagcttgcattgactaaatggattcaacaagtaagtggttgaatttatgcaactgtctagtttttta------taatgaaacaagcaaaaataaaccataaagaactgaaTTGGGCAGTAA--GTGTATAAAAGATGTGAGTCTAg s canFam2.chr12 5160646 1732 + 75515492 CGAACTCCTCCCGGTTATGGATGTGTCTTTCCACGAACCGCACCCGCTCCGTCCCGTTGGTGAAATGGCACTCGGGCTTAAACTGGTACACGAAATGTGCTGTGGGGACGGGGG-GATCCGGTCACCAGAGGCTCCT----GGAAGACACCGACGGCGGCACCCCGCGGCGGTTCCACCCGC-ACCCCAACCACCAGCA--CCCACGGTTCGTGTTTCCTCCGCTGGCGGGGGAGGGGAGGC----GGCCCGGGGGGACGAGACCCCGCTCAG--GGGGGCCTTTGGCGGCCACTC---GGCTC---CCGGCTCGGGTGACCC---GACGCCCGCCAGCGCGAGCAGCCG--CGGC-CTTCACCCCTCCCCGCCGCCTCCCGGACGCCTCCCCGGGACAGACAgcccctggctcctcgccctcgcccctggctcctccccctcacccctcgcccctcgcccctggctcctcgctcctcgccctcgcctccCGCAGCCCTTTACCTGTCCTCAAACACGTCCCTGCTGCTTCCCCCTGGTTTGGGCTGAGCCGCCCCTGTGAATCCAGAGAAGGGAAGACACACGTCCC--CTCCGCTCGGGGAGCTCAAAATGGAGGGAAAGTGACGGACCAAACCCAAAGTGGCAAGACTTTGTACAGAGGTGAGGAATGTTAGAGGGATGAAGTTCTAGAACTGAGAATAGTTGGGTGGTCTGAATTACCT--GGGTGCCAGAGAAGTAGTTCAAGGGTGACGTGAGATGTGACATGAAGGATGAAGTAGATGCGCCgagagagagagagagagagagagagagagagagagag-agagagaaga----------gTTTGGGGACAAAGGGAGGCACCATTCAGGTCAAGGTAAATGTGACTGTGCAAGAGCCTGAAAGAACTGATGAATTTCCTCAAGAACCCAGAGGAAACAGTTGATGGAAACACAGACAGTGAGAGGAAGGAGAG-GGCAGTTTCGACTGGAGTCATCAAATGGAGCCCACAA--GAAAAGCC-CGTGGGTGGTGACA-GCTTTTGACTTTTATACTAAATTCAATGGGATGTGACTGA--AGTTTTAACGAGATTAAAACCATGATCGCAATACA-GTTCTCAATCCTTTACCTACGTTTCCAAATTCAGAAATCTCAGAAAACCAGATCTTTCTAAGAATTTTGAT-GCAGAACCCG-TTGGCAAATCTAATCTGATGAGG---------TAAGGGTCGGTCAGAGCTCTTACTGGTCAGTCACGTGTGCTTCTGTAGTTTCAatatatgtaaacacacacacatcataattcatgtatatatatatgcaaacatg--------tatgtatata-ttttgatatttatgt-TTTACGTTTAATTAAATTAAGACAAGTGTTTTATTCAAGTATAATTAACATGAAAATTTTTAAAATATGGAAAAAATAAC----TGTTTAAAAGGGAGACAAATAAAAGAGAGCATCTCACATTATTAATAGAGTAGATTGTAGAATTAGTACAAAAGTTTGACATATTTTACTAAAAAAATATTTGTGGCAG--TCACAATTTATGACT----------------------------GAGATGGGGCTGATCAAGAAATCATG-AAATACTGAAAAACGTTGCATAAGGCAAAAAATAAAAAACAAAAATCTTGGCTTGCATTGATTGAATTGGCTCAACAAGAAATTGG-TGAATTTACACAATTTTATACTTTATTACTTCTGTATTTAAACAAACTAAAATAAACCACAAAGGCCTGAATTGGAAGGTGAATGTGTGTATAAAGTGTGAGTCAAG a score=1909 s hg19.chr6_ssto_hap7 3986617 62 + 4928567 ATTTTTCAGAAAGAGCACAG--TGTGAACCAATGCTTCcagcctcagcacta----------ttgacattttgg s canFam2.chr12 5162378 74 + 75515492 AATTTTTAGAAGCCCCACAGTATATAAATCAGTGTTTTTGATCTCAGCATTAACATTTAGAGTTAACATTTTAG a score=7500 s hg19.chr6_ssto_hap7 3986679 294 + 4928567 acgagataaatcttggttggtgatggagtctattctgaacattgtgggttctctagcagtgtccctggcttctgctcattaaatatcagaagaaacccctgttgtgacaaccaaaaatta--ttctaacattgccacatgttccTCAAGAGTGATGGGAGGGAAGGGGAGGGGTGGT--GAACTGTCCCTGGGTAAGAAACATGGGTGTGAACCATCTGAAAATATCTGTGTTGAATAAGTCACTATTAGTTATGGAGCAGCTGAGAACTGCATTGAAAA-------------ATATTTGTTGAAAATCTT s canFam2.chr12 5164124 279 + 75515492 acaagataa-----tgttgg----gaagcctgttctgtacattgtaggatgtctatcagcatcactagcctctacccactcaatgtcagatgaaacctcagcttaaaaaaccaaacaggggctccagacattgctatattctct--------------------ggggagggggtaccaaaacaattcctgcataagaaccactgTTAT--ATTAACTGAAA-TATATGCGGTGAAAAAACTGATGCTAATTATGGAACAGCTGAGTATTACATTGAAAAATTTGCCAATATCATATCTGATAAAAAGCTT a score=18145 s hg19.chr6_ssto_hap7 3990824 604 + 4928567 tctagccttctttctgtccttc--------cacataatttcccacaccagagcttcccccccattcattctccctggaactttcgtcctttagatcttcacgactgtctatttatttt-----gt--tgtctcagctgaatgtcactttctcagttatagctgcctaagcatatgaaccaaagt-aagtgaatccatgtctctctttttcacaaacctgatgtcttttcttcagtgcact-atgtctctctaacattttcttctttgttaaatgcttattgggttagtgtctgtctcctctactcttgtgtaacttcc-atgagagtcgggaccctctctatcttactcaaatagaatgatttgaacttagaatggagcccagtaaagagtagctgctgaaaaaaataagtgtgctttacatgaataaaC-CAGGGTG-TGGGAACTGATCACTGCAGGGATCCTGGAAAGCAAGAAGGGGATC-AAGCTCCAGCACTCTTTCATTTTGATATCACACTAGACTCCTCCT----CCTGGTGAGAAATACAGGCAAACTTCTTCTTTCTCCTCCTTCTAGTTGGAAGAAGAATTCACAGATAGAGAAACAGTGA-TTTAAGAAAAAGGAAA s canFam2.chr12 5165796 597 + 75515492 Tctagccttcct-ctgtcttttaaactcagcaaacatcttcccacactttggcctctgtcctgttctctcttcc-------------ctcaaattcttcac-atggtggacttttcttcatcagtcatgtctcaactaaatgtcactttctcagggggagctccctagccacttgcaatgtagtcaggtgaatccagttctctctatttcacaaacctggtgtgtttttctcagagcactgattgctctctgaaatttt-ttcttctttaaatgttttttggg-------ctttctactctgtcagtacactaccacttatgatggtagtgat----tttatcttattcaaatagagttcactgagcctagaacagaacccattacaaaataggtgctcagaaaaatatctgtgatttaaacaaataaaCTCAGTGTTCTGAGAATCAGTCACTGTAAGGATCCTGGGAAGTAAAAAGAGGCTTTAAGCTTCAACACTCCTTTATTTTTATGATATATTATTTCCCTTCTACTTCCTGG-GTGAAAATCAAACAAACTTCCTCTCTCTCCTACT----GTTCTAAAAAATAT-CACGGATAAAGAAAAGTTGGCTTTAAGAAAAAAAAAA a score=492 s hg19.chr6_ssto_hap7 3991428 30 + 4928567 TTTTTAAATTAAGGTTCATCTCTTTTTGCc s canFam2.chr12 5166601 30 + 75515492 TTTTTTAAAAAAGGAAAATTTCATTAGGTT a score=79044 s hg19.chr6_ssto_hap7 3991748 2101 + 4928567 TTATCTCTTTCAATGGATCTCATAGTGCTAAGGATCTTTGCAAGTTTTAGAGATTTCTGGAAATGATGACAACATAGCTGGGGAAAAATAGAGAGAAACTGGAGGTAGAGATAAGCAGACATGGCTAATTAAGGAAAGCTGAGGGCATGATGGGTGAACCTATGAAATTTAGGAC-AAGACCCCAGTAAGACAAGGAGTTTCCAGGACTTCTTCATTGACTTTCAGCCCTATTAGATGTGAACAATGTCCATGTCGTCTCGGTAACCCCACACAGAGTATAtagtttgaacattattaattttctggtatttgactatttttgacttacaaaaatagaatttcatataatttatcctaTGTTAGTTGAATCTCTTCTGTCATGTCTAG-------TTAGAGCATGCAGGAGAAACAAG---TATAGAAAGGTTATAAA-AGATTAATAATAAGCACTAATCTGGGCCAGTTTTTCAGAGGATGCCTTAAGTTCTTGAGGAGTATCCAAGTATTCAGGGGTCTGAGAGACCGATCAAGAGGAGGCACCAATGAATACCTCATAAATGGTCTTTACCTGTAGGGTGACTCCAAGTACTAAAGATGTCAGTTTCAGATCCAGGGATTTTTCCCCATAAGAAAGAAAGA---GCACTAAGTATAACTTCTGTCAGAGAACCTACA-TATGCTACAGGGATACAGGCTTTATAAACACTGGAGTTCAGAAAAAAAAGAAAGGAAACAATGGGGAGGCCACTGGGTACATCCTCACATATGAGGAAGAGGGGCCAACACCACAGGTCCTGTGGAGG-ACAACACAGGATCGTCTAGGAGAGACCCTTTGAATTCCTTTG-ACTC-CCACAAAATTTTCAAAACAAAACCTTGTTTCGT-CTGACATAAGTCAACATGATAAAGGGAAGTGCTGTATGAGGAATTTATTTTAGCATCCTTATTTCTAAATCCTCTAAAGACCCTGAGGACATGTGATGCAA--------AGGTTTTATTGGTAGAGATTTAAAGTAAAACATGGCCTGTACA-----AAGGCCCTTTACACAGTCTCATGAATAGGGCAAGTAGCCAAGTTCCATTTGTGGTGGAAATAATTTGGGATCCATATG--ATAAAGATGGGCAATCCCTGAAGAAAATGTCACACTTTCTTAAGGGACATGGCCTGGGCACAATGTTAACACAACTCCCTTTTTTCCC--CACCCCATAGTAGGTCAGCACCCACAATGTGCACTTACGTCGGGTGTCCCCAGCCAAAGCCAGTGGGGAGCTCAGCACCATCAGTGTCACTGTCAGAGCTGCCATGCAGGAGCCTCCAGGGAACTTCAGACACACCATGCTGGAGAACAGGACAGGACCAGGGGCCAGAGGAGCAGGTGAGTCTCACTCAGGGAGAACTATGACCCCTCTCCACCCACATTCCAAATTATAGGGAAGAAGTTACTGATTTCCTTGCTCGTGGATTGGGTAATCTAGTGTTGGAGAACGAATCAGCATCTGAGTACAATAGCATCATCAGTCGCTGGTCAGAGATGCTGTATGAAGGTCCTTTTCTGAAAC---AATTTCCTTC-TTTAAAGGATTGTTTTAATTTAGTACTTGAAAGGTTTGAACCAGTTGCGTGTAAAACACCTTAATTGTGTCCCTATTGTTAGCCAGCTCTGTGCTGGTCAGTGATGTGTTCACAAATTTGAGCCTTGTAAGAGCATTCATTTCCCACTTGACAAGAGAATTGTTTGCAGGAGTGAG-TGTGTGA-GTGTGCTTAGGAGTAAAGGAGATGgagggaacatggttgcaaatcaggagacttttaatctggtccttattgcaccatatcttactgttgtagacttgggaaaattacttcatgtctcacagttaaaatgaaggcaccgtgatctttcaggtctttcaatactggaaaatgctgtgattctgtgGATGCCTCAAGGAGCAGCAGCCACGAGTATCTGTTGATATGACAGAATGATAGCTGTTGACTAGCGAGTTTAATCTGTACCTATTTACAGGTAGAG-ATTCTTTAGTAAGTTAAAGGAAATGGAAAGTTTGTTAATAATTTAATCTGAGTAAAAAGGGTTTTTTCAAGTGTATCTCCTGATG s canFam2.chr12 5166631 2048 + 75515492 TCAGCTCATCC--TGTTTGTGATAATGCTGAAGGTCTGTGCGAACACTGGGCATTCTCAGTAATGGTGATGACAGAGTTAGGAAAGAATAGTGACAAACTGGAAGTGGAAGCAACCAAATACGGCTATTTAAGGAAAAA-GAAAACATGATGAATGAATCTATGCAATTTGAGACCAAGACCTCAGTAAGGTAGTAAGTT--CAGTTTTTGCTC-TTGGCTTTCAGTCCTATAAAATGTAAATAACCTTCACTCTTTCT--GTA-CCTTGCTCAGGGTTTGCAGTTCGAATAC-ATGAAATTCCTGATATTTGACTAATTTTGGCTTTCAAAAACATAATTTCATATAATTTCTCCAATACTAGTTGAACCCCTTCCTGTGGGCTCAGGGCAAAATGGGAATATGCAGGAGAAAGTGACTCTATAGAAAGGTTCGAAATAGATTCATAATGAAAATTAACCTGTGCCAAGTTCTTGGAAGAGATATTAAGTTCTTTAAGA-------------------------------------------CACCAAAGAACACCCAATATGTGCTTCTTATTTACTGTATTATTTCAAGTACTAAAGATCACTGCTGTAGCTCCAGGG-----------TGAGATATAGAGATAAAAATTAACCCCAACTTTTTTCAGAGAACCTCCAGTATA------GGATAAAGGCCTTATAAACTTTGGGGCTCAGGAGAAAGGAAAGGAGATCATGGGAGAAACCTCTTGATACATTCTCACATATTAGAAAGAGACACCAACATAACTGATCCAATGAAGACATAAAACAGGGTCTTCTCAGAGAGAACTTTCTAATTCTTTTTCATTCACCATAAAATTTTCAGAG--AAGCTTTCCTACTTTCTAGCATAACTCAACATAATAAAGGGAACTACTTGATGGGAA--TTAATTTGGAGTCATTATTTCTAAGTCTTCTCAAGACCCTGATGGAATGAGATGCAAGCCTGAAAAGCTTTTATTGGAGGAGAGTTGAG--AAGAAATGGCCTATATATATGAAAGACCCCTTAAGCAA-CTCTTGTAGAGGGCAAGCCGGTGAACTCCTTTTGTTCTCAATAGAATTGGGGGTCTATATATAATAAAAATTGGTGGTTATTGAAGAAAATATCACAATTTTCTAAGGGACATAGCCTGGACACAGTGGCAAAACTAATTTCTTTCTTCCCTCCAACCCATAATATCTTACCACCCAAAGTGTGCACTTACGTGGGGTGTCCCTGGCCCAAGCCAAGGGAGGGTTCAGCACCATCAGTATCAGCATCAGAGCTGTCATCCAGGAGCCTCCAAGAAAACACAGACACACCATGCTGGAAAACAGAA-AGGA-CAGGGTGCAGGGGAGCAGTCAGGTGTCACTCAGTGAAGACTGGGACCCTACTTTGGCCACATCCTAAATAACACTAACCAAAGAATTCATTTCATTGTCCCTGGATTGGGTAATCTTGGTGATAAGAACCAATCAGCAACAGCAATATATTGCATCATCAGTTGCTGGTCAGAGATTCAGTATGAAGAGCCTCTTCTGAAACTTTGATTTTGTTCATTGAAAGGATTGTTTTAACTTAATACTTTAAAGATTTGATCCAGGTGTATATGAAACATTTT-ATTGGACCCCTATTGTGAGCCAGTTCTGTGCTGGGCAGTGATGTGCACGAAAGTTCGAGCCTTCTAAGAGTATTCATGTCTCTCTTGAAGACAGAATTGTTT-------TGATCCATGTAATGTGTTTTTaggagctgaggacatggagag----tgattgcaagtcaagaaccctttgctctggaccttgctgcaccatcacttagtgttgtagatttgaggaaaatatttaa--cctTAACCTTGAAATGAAGGCACTGCAATCTTTCTGGTACTTCGATA-TGGAAAGTGATGTGATTCTCTGGACAGCCCAAGGAGCAGCATCTCCTGGTAACTGATGATATAAAAGAATTATGGCTATTGATTGGAGAGTATAGTAT-TACCTCCTTATATGTAGGGAAGTCTCTGGTAAAGCTAAAGGAATTGAAATTCAGTCATTAAATTAACCTGAGTTAAAAGG--TCCTTCAAGTTTATTTCCTGATA a score=8783 s hg19.chr6_ssto_hap7 3993849 207 + 4928567 CTGTCCCCAAGTTTAGTGGCAGCTCCAGAACACACACAGGCAAGCGGCTTGCAGGGGCCACCTATGTGCAATGGAGGGTC-TGAAGTTGCCTTTGTAT-GCACTTACCCTAACAATGTGATAAGGTCAACTGTGC-AATCCAAGTATTCAGGGGTCTGAGAGACCGATCAAGGACTCAAAGTCAGCTGTTGACAGAACAACTCTGTTTTt s canFam2.chr12 5169273 209 + 75515492 CTATCATTGAGTTTGGAGGCATCTCCAGAATATGCATAAGGAAAGGGCTTAGA-ACATGATCTATGTGGAATAGAGGGTCTTGAAAGTTCCTTCATATAGCACTTAACCTAACAAAGTGATAAGGCCAACTGCCCAAATCTACACTTACAGGGAGCTAAGAGATTGATAAAGGACTCAAAGTCAGCTTCTAGCGTAACAGCTCTGCTTTC a score=5241 s hg19.chr6_ssto_hap7 3995173 133 + 4928567 aataattaatattttatGTG--AAGAGTGTTCAATCCCTCATTCCTGGTTCCCATTAGGATTTCCTCATTTGATTGAGGCTATGGCCCTTTACTGTTCCACTTCTCTTGTTTTATCATAAGGGAATATATAAGAA s canFam2.chr12 5169483 131 + 75515492 GATAATTAATA-TATATGTGGCAAATATGTTCAATCCAT-ACTCCTGGATCCCATTCTGTTTTCCTCATTTTACTGGATATATG--TTTTTAGTGTGCATCTTCTCTTGCTTTGTTTTAAGGAGACATATAAGAA a score=9588 s hg19.chr6_ssto_hap7 3995620 155 + 4928567 TGCTAACTAATACGTTACAGAATGTTCAGGAAACAGAACCCTAGGGAAAATCTATGAATTACATCAGTTAATGTAATCATATAATTTTAAACATATAATTCTACATTTAGATACTTATTATGCTTTATATTTATATAAATGTAGCATCTAAGATT s canFam2.chr12 5169619 155 + 75515492 TGCTAATGAATACATTATAGAATGTTCAGGAAATAGAACACAATGGAAATATTATGAATTATATCCTTTGATATAACCATATAATTTTAAACATATATTTCCACTTTTAGaaaattattatacattatattaatataaatGTAATATCTCAGATT a score=8208 s hg19.chr6_ssto_hap7 3995775 185 + 4928567 CAGAATGGACTTCAAAGTACAACTATACAGATAAAGTTCTGCATTAATTCACACCCTACCACAGTTCTGATACACACTCCTTCCTTGTGTGCCTTAGTGTTTCTAGGGTTGGGATACTCACCATGCTGCAATAAAAATGACTAAAATTTCTTCAGCAATTTTTGAGCATTTTGCTTTGTACTCAG s canFam2.chr12 5169983 171 + 75515492 CAGAATGGACTTTAAAGGACAACTATCTATCTAAACTTCTGCATTAATTCACATTCTACCACAG-TCTGATAAACAGTCCTT-----TATGGACTAGTG---ACAAACTATGGAT----ACCATGTTGCAAT-AACATGACTAATATTTACTAAGCAAATTttgagcattttgctttgcacccag a score=38146 s hg19.chr6_ssto_hap7 3996206 908 + 4928567 ATTGAACCAAGGTATTATATATGTGATTCCAAACCCCTCAGGCTCTACTGTTGTATTATACTACCTCACATTCAATTTCTAAAGAGAATTATGTCCCTTATACTAAAATTATTTTTATCCCTTTAATTCATGGCTGTGCAAATCAGTAAGACTACTTCTTTTAGTGAATGGCAACATTTTATAGACTTTGGGGTAGATACTGTGTAGCAATGCTAGTTCCTTCAAAAGATTcccctcatcatcatggttactctcctctggaaatgacacagtttgCGTTTATGTTACATAAGGACACCCATAGCTCCTGCACAAATCTCCTTCTTATTAAAGATAACAACAGCCTCAACATTCCTAACTCCGGTTTATTACTCTCAATCATCATTTCTAATTTCTCAGCACGAAGTAGTGCAAGTTTGATCATTTCAGAATAGAATAAAAATAGTGTCTCGTTTACTTTGGAAAAATATATTTCTGTTAATGTGGAAAGTTGAAGATTTCTTGGAGAGGTTGGGTAGAA---------GTCCCTGGATTTGAGAACAAACTGTGTTCCTACACTACAGTGATAATTCAGTACTATTGACAATTGTGCAATTGCAACCAGGAGAATATCACATTTCATTTGATAATAGGAAATCGTAATTTACT---AATTAACTAATTGTGGTGTGGTAATCTAGGAAAGG-AAGCTAAGGTTCACCTTATTATTACAGGATAAATGCAGAGGCAAAAATAAGTAATTCTACATCAAGAATGTAC---TAAAATATA-------GTTAAAGAGAA-ATTTTCAAAATTTGTTTATATAAATTTGACACGCTATTCATAAATCATACAAATTTATATTTAAAAAA---TGGCCAATGGCAATGAACTAAATTCTGTATGTTTTATACATTTATGAGTAACAAAG-ATGTtgtctta s canFam2.chr12 5170514 921 + 75515492 attgagccaagt-----tatatgtgagtctaaatcccacacgtccaaccattacaccTTACCATCTCACATTTAATTTATGATGAGAATAGTGACCATTATGTTAAAACTATTATTGTCACTTTAATTCATGGTTATGGATGTCTATGTGACTACTCTTTTTAATGAAT-ACAGAACTTTATATAAATTGAGGCAATTCCTCTGTGGTAATTGTAGTTCCTCCCAAAGATTCCTCTCATCACTATCATAAACATCTTGTGAAAATGACAAACCATGCATTTATCTTATGCAATGGCTCCCAAAGCTCCTG--CAAATGTCCTTCTTATTAAAAATAACAGTGGCTCCAA-ATTACTAAATAAAATCTATTGTTCTCAATCATAATTTCAAATTTCTCAGCATGATTTATTACAAATTTAAATAAGTCAAGAATAGATAGAAATTTTATCTCATATAGTTTGGAAAAATGTATTTCTGCTAATGAGGAAACTTCAAAGTATCTTGTACAAGTGGGATAAAAGTCATTGTTGTCCCTGGATTTCAGAAGAAAGTATGTTCCTAGACCCCAGTTTTAATTCAGTTCTATTGTAAGTTGTACAATTGCAACCAGGAGAATGCCatatttaattttagaaattaaaataataatttaCTCCAAATTAACTGCTGTACCAGTGACAATCTGGGAGAGTCAAGCTTAAATTCACCATA-AATTATAGGATAAAAGGAATGGCAAAGAAAAGTAATTGTGTGTCAAGAACATACATATTGAATATATTGAAATATCAAAGAGAATACTATCAAAACTTGCCCATATAAGTTTGACA----ATTTACAAATCATACAAATTTATTTTTGAAAAAAGTAGGCCAGCAACTATGACCTAAATTCTGTA-GTTGCATACATTTATGAGTAACAAAATGTGTTGCTTTA a score=67251 s hg19.chr6_ssto_hap7 3997420 1960 + 4928567 TTCTTTAA-ATTATATATCTCACACTTTCCTTCAATATTCAATATAAGCATAGTTCAGGCTAAACAATGTAGCAACTGTCACCAAACCATCAATCGTACAGGTGATCTCTAGGCTGAACTTTTGCACTGAAAACAAGAGAAGAATCCTCTCAAC-TCTGCTGTGTGTGAGAGGTGTCAAATACGAGAGCTTATTTCCTGAGGAAATGGCAATTAAATTGGTTTCTGGAAGAAAGTGGTTTTCCGTACGGAAGTTGCATGGTCTCTGGTCTTGATGAATGAAACCATAGGCTTGGTTTTACAGGAAATAAATCCCAGCATTCTCAGGACTAAACAGGTAAAATCAGAAGCACAGACTTTTGCTGAACAACAGGCAGGTTGACATTGGTAGGATTACAGAATGTCTTGAGTCCTACCGATTGTCACAGAATGGGGCTCACTTGCAGTAAGGCTGAAAGCTTGCAACACATTTTGGAAAAATAGGCTTTTTTGGCTATCAGCAAGCCCTG----GTTATCATAGAATGTCTGTCACTTGTCCAAGCAGTCACAAAATGTTCTCAGGAGTTTTCAGAAAGCAACCACTGCT-ATCTGGAATTTA-AAGTAAAAAGCAGATTACTAATCCTTATATCTAAAGAAAAAATGACAATAACAATAAATGGATAAACAGAACCAGTTTCTTCTCAGCATGGAAGATATGTATCCTGAACAGAAAACTGTGCCATTTAGAGGCCTTATTAGTATTCATCACACTTGATAGGACCCTTTCCAGTAAAATCTCAGCA---ATGTCCTCCATTAAGAAACTTTGG-TAGCGCCAATCATTACACCATGACACTATCTAGGTCAGTTGACAGGACTTCTTTAACTTCCAAATGTCATTCTTTGGCTCAACTTAGC--TGTTTTATAA---------------------------CAGAATGCTTGCCATTGCAT----ATAGAGAAAACAACTAGAATTCCCATAGGCCTTTC--------------------------------------------------------------------------------TACTAATATTGTAAGTACAAAGAATTTTCTTTTGATTTATCT---TTCTAGCTCTTATGTTAATTGTGCTGTGGTAAGTATCCAACTATCTATCCAGTCCAAA-ATAGGCCAGGTTATTTTTCAAAATTTCATTTTGGTGCTCCACTAGCCCACTCCCCAGTGACTGCAGTGTGGACAGTGAAGACATTGATGAACCTGTTGAGCTGTACCAACCTCTTTGCAATCTGTCCTGTGAAGTGTGTGCCTGGTTTGTTGCttattttatttaaaataaataataaaatCTTTTACCAGTTATTTTTCTAATAGCTCA----------TCCTT----GCAGACAATTTATTATCTTGAAAAAGTAAACTTACTAGTACTTATTTATGTTAACAACATTTTACCTAAATAAAATCAACTTATGTGTGTGCAAAAGAATTAGCTAATCCTTTTGTCATGACATCTCTTCCTACCCTGTGTGCCTGTCAAACAAAG---CAACTC--TCAGTATCATACAGCAATTCTGAGAAAAATGAAGCATAAGAACCACACTAACTATTGCTAGCATCCCTGTGTTGGTCATGTGGTCATTCAAGGGGTTACACCAGCAAGATAAAGGTGTAAAACTTGGTACTATTAAGTATCCATCTAGAGATGCTAAAGATGATTTGGGTGCAAACAAAACCCTGTCAGTGTCCATAGTTCACAATTTTGGATTTGACCTTAAAG-----------AGATG--TCTAGTCAACTGTTAGAATAAGAAAAAAGG------------------------TACCAGCTAG------------TAAAAAA--------------------------------------TAATCTAAGCCATAGCTATATTATTAACCAGAGGAAAATACTTTATAATAACCACAGCAGAAGATAATATAAGGATTATTAGAAATTTTTGAGTTTTTCCAGAAGTGAGGAATCTTTATTGCTATTACAAGTTCTAAAGCTATGAAAAACAAAAAAGCA-TAACAAGAATCAGTTCTAAAAGCAACTGGTTCTGCCACTGAGGCAAAATACATAGGCATGGGTTTATTTTCTCTCCAGAACAGGATTTAAACA s canFam2.chr12 5171456 1988 + 75515492 TTCTTCAACATTAT-----------------------TTCAGTATAAGGAAAATTCAGGTAAAAGAATATAACAACTTTTACCAAACCACCAATCCTACAGGTG---TCTAAGCTGAACTTCTTCCCGTGAAGCAAAAGGAGCAG-TTCTCAACTTCTGCTGTGTATAAGGAGTGTCAAGTA--AGACTTTATTTCCTGAAGAAGAGATGGTTAAATCGGTTTCTAGAAG--AGTGGTTATCAATACACAAGTTCTACAGTTTCTGTTCTTGATACATGAAGTGATAGGTTTGTTTTCATTGATAATAAATCAAAACACTTTTGGGAACTAACAAAAGACATCAGAAGCACAAGCTTTTGTTGAAC-ACAGGCAGGTGGAAATTTGCAGCATCACAAAATGTCTTGAGTCCTACCAGTTATCACAGAATGGGACTCATTTGTGGTAAGCCTGAAAAGTTGCAATATATCTGGGAA------------------ATCAGCAATCCACAGAATGTTAGCACAGAATGTCCATCATTTATCCAAGTAGTCTCAAAATATTCTCTGCAGTTCTCAGACAGCTATGACCATGAATATGGAACTGAGAAGTGAGAAGCAGGTCAGAAGTCCCTTTATCT-AAGAAAAAATAGTAACAATAAGAAGTGGATAAATGCGGCCAATTTCTTCT-ACCATGGAAGACATGTATCTTTGGCAGAAGACTGTCCCATTTACAGGTCATATTAGCACTTAGCAGACTTGATAGGACCCTCTCCAGTGAGATCTCATCAATGATGTCTTCTATTGGGGAACTTTGGATGAAGCCAGTCTTTATACTGTGGCATTACCTAAGTCAATAGACAGGGCTTCTCCAACTTCTGAATGTCATTTTTTGACTCAATTTTTCTGTGTTTTGTAATACTTAACATGCACTCTTTTTTAGAACCAGAATGTTTGCTATTGACTAGTCACAGAAAGAACAACTAGAATTCTCATAGGCCTGTCATTAATATCATATGTAGGAAGAATTTTAGTTTACTTTCTTTTTGTTCTAGGCCATGTTTTAATTGTACTCATAGGCCTGTCATTAATATCATATGTAGGAAGAATTTTAGTTTACTTTCTTTTTGTTCTAGGCCATGTTTTAATTGTACTATGGCAAAATACTTATCTCTTATCTGGTACAAATACTGGCCATATTATTTTTCAAAATTCTGCTTTGTTGTTTCATTAGTCAACTGCCCATTGATT-----------------------------CTTGT--------------------------------------TGTGTGCCTGGAATGTTGTCTGTTTTGTTCAAAAC---TAATAAAATCTTTT---AGCTATTTGACTAATAGTTCAGCAGCCTATCTCCTTATAAACAAGCAAGTTTCCACCCTGAGAAAGTAAATTTATTAGTAATTAT----------------------------------------------------------------------------AATTTCTTCCTACATGGTATGCCTGTAAAAAAAAACCCCAACTCTTTCAATACTGGAGAGCAATTTTGAGAACATTAAAACATAAGACTCTCACTAATTATCGCTGGCATCTATATTTTGGTCATATGTTCATTCCATAGTTTATACAAGCAAGA-AAAGGAGCATAACTTGGTGCTATTACACTTCCACCTAAAGATGCTAAAGCTGATTTGGGTGCAATGACAA-CCTCTCAGTTTTTAGAGTTCAGAATTTAGTACCTGACCTTAAAGAAAAAGTTTTCAGATGAATTATGTCAGTTGTTAAAATAGGATCCAAGGGGaatttaatttaaaaaatatatatattaaccaaggaatttaattttaaaaaatatattaatatatatattaattcaaatttaatttaatttaatttaaaatatatatata-tattaaCCAAGGAAAAATGTTTCCTAATAACCACAACAGAAGATAACATAAAGACACTTAGAAA-GTTTAAGCTTCTTCAGAAGTGAGG-ATCCTTATTGCTTTTACAATTTTT-AAGCTATGAAAACCACAAAAGGATTAATAAGGATCAATCCTATAGGCAATCGATTCTGACA-TGCAGCAAAATACATAGCTGTTGGTTTATTTTCCATATAGAACAGCAGTTAAACA a score=6545 s hg19.chr6_ssto_hap7 3999686 106 + 4928567 CTAAATTATTTTAACTGTCAACGTTTCCTTCAGTGGTATTGCTGATACTAATTGCAATATCATTAATATTGACCATGGT-TTTTTCACTTGTAGACTTACAGCCATG s canFam2.chr12 5173444 106 + 75515492 CAAAATTATTTTAACTGTCAACATATCCTTTAGTGCTATTGCTGGT-TTAATTGCAATATCATTAATATTAACCATGGTCTTTTTAATCTGAAGTTTTATAGCCATG a score=11952 s hg19.chr6_ssto_hap7 3999792 213 + 4928567 ACCTAGATAGTGCCATGGTGCAAAGACTGGCTCCACCCAAAGTTCCTCGATGGATGACAT---TGCTGAAATCTTACAGGAAAGGGTCCTATCAACTCTGATGAATACTAATATGGCCTTTAAATGGCACAGTCTTCTGTTGAGGATACATATCCTCCCTCCATGGTAAGAAGAAATTGATCCTGTTTATCCA---TTTATTGTTATTATTTTTCCTTA s canFam2.chr12 70343240 214 - 75515492 ACTTAGGTAATGCCACAGTATAAAGACTGGCTTCATCCAAAGTTCCCCAATAGAAGACATCATTGATGAGATCTCACTGGAGAGGGTCCTATCAAGTCTGCTAAGTGCTAATATGACCTGTAAATGGGACAGTCTTCTGCCAAAGATACATGT----CTTCCATGGT-AGAAGAAATTGGCCGCATTTATCCACTTCTTATTGTTACTATTTTTTCTTA a score=2731 s hg19.chr6_ssto_hap7 4000006 90 + 4928567 TAACTTTACACCATCAGAAACCAATTTGTGTTCCCATATGGGCAATTAATTGGAGTGTTTATCTAGATAGACTCTAgacctaattccttc s canFam2.chr12 5173550 83 + 75515492 TGACTTCAAACTATCAGAAACAAGCT-------CCTTGTGGACAATTCCCTGGAGTGTTTACATAGATAGGTTTCTTTCTTTCTTTTTTt a score=14776 s hg19.chr6_ssto_hap7 4003712 547 + 4928567 aaaaatacaaTAATTTAAAAAATCA--TAGGATAGAACAAGGTTCTTATATTTATGGGAGGATCAGGATAAATCTTCAAATACCTTCTAGAGGTATAGTTGAGGTGAGATATGTACTGAAAGCAAAAATGGAGGCTGGGAACTAAACACCAGGCATTTCCTGTGCATGTGTCTATTCAACAATCATGCCAATCGACACTTCTTTCACTGCCTCCCACCCAAATGCAGAGAGTGCATCTGTATTGTGACCAAACAGAGAAGTGGTTGTAAAAAGTAGGGCTACCCTGACATTTATTCACCAatatccatgaataaataaatatgtacacgtaaatttatagatatatacatccatacttacataaataATTTTAAA--AGTGTCCATTTTTACTTCAAGAGAACTAAGGATACTTTTGTAGACATTAGGGCAGATAAAAGATGGTAGATAAAGAAAAGGGAAATGAGAAGGAAACATTTCTGTAAGTGCAAGTGTGGGGGAGAAGGAGTGGGAGCTGGGGG-GAAGCTGAGAATTGTGTTTTGTGACAAAGAG s canFam2.chr12 5176532 467 + 75515492 AAAAATTCAAAGTTATTAGAAATCAAGCAGGGAAGAA----ACTCTCAAATGTATGG-AGAATGAAGACAAACTCTCAAATAACTTCTAGAGGCACAGCTCAGGTGAGACATGTACAGAA--------------------------------------------CATATATCTGTTCA-CAGCTGTGCCA-TCAATACTCTGTTCACTGC-TGCCACCCTGTTTCAGA-------------CTGTCACCAAATTGAGAACTGGCATTCAAAAGTGGCACCAACCTGACATTTTCTCA--ATTATGTATAAAGTACTAAACatatataaaaaattttaaatgcataaaaat--------aaaacagtatttttaaataaaaGGCCTT----------GGAGAACTGGGAATATTTTTGTGGATATTGGAGCAGATAAAAGAAGGTAAGTGTGGAAAAGGGAGGTAGGAAAGAAATATTTCCTTGCGTATAAATGTTGGAGAGAGGGGGTGGGAGCTGGGGGAGAAGCTGAGCATGGTGTTCTATGATAAAGAA a score=10528 s hg19.chr6_ssto_hap7 4004259 204 + 4928567 CATGGTTCATGGACAGTAGCACATGTGAGTCACAGAAGGACAATAAGATCGGGAGAATCAGCCAAGATGGCGCTCCA-GCCAGGGTTACCAGTGTCTAGACAGAAAGCAAAGTAATAGCTCAGCAGCCGCATTGAATGGGAACAGTGAATAGTGTGAAAATGAGAAAATATTGGGGCAAGGCCACTGATTCCCACAGGATGCTTT s canFam2.chr12 5177205 203 + 75515492 CATGGTTCATGGGAAGTAGCATGCGTGAATCATAGAAGTACCATAATATATGGAGAATAAACCAAAATGGTGCCCTAGGCCA--GTTATCAAAGTCTAGTCAAAAAATAAAGTAATAATTCAGTAGCAATATTGAATAAAGTTAGTGAATAATGTAAAAATGAGAAAGTATTGAAATAAGATTACTGATTACTACAGGACTCTCT a score=2862 s hg19.chr6_ssto_hap7 4005054 654 + 4928567 GGGGATattcaatcacaaaaagtgtgttcagtgcttcctttgtgcaaaagattcttctaa-tgctggggatacaaagattcacatgaatta--gatcctacttttaag-----tagatcCTACACAGACAAAAGAGCGCATTGTAATGACAGACATATAAAATTCATATAAAAATGTCACAAGATCTACAACAGACATATCTATAAAAAATAATCAAACACAATTTGGTGTTATTAATTTTTAAGACAAAAATTTTAAAACAAAAATGGTTAAAATTAAGTATAAACTTATATTTACAACAAGAAGGAAGCATTTGTATAGATGTAAGTTCCAGAGGAAGTGAAACTCAGAACACAGAGAAAGGGTTACGTTTCAGGTTGGCTAGAGACTC-GCTGGGGAACAGGAACTATCATGAA-TAACATGTGTGCAGGAAGCAGGAGGAGTCGGGAAACGGAAATAGAGATAGAGGGGAGTCTGTTAGACTAGAATTG----AAAGGCTCCCTTAAATAACGCTGGGAGATCAGAGTGGATGTGCAGAGCTGAA--GTTCTAAGAAAGGCATTGAAAATTTGGCAAAGAAGTTACATCTTTTAGAAATATGTGGATGGACGCAGGAAAAAATATCAAGCAGTAAAAC---TTTTACAATCCAAGGTTAGTTATGAAGG s canFam2.chr12 5183840 562 + 75515492 GGAAATATAAATTTAGTACAACTGTATT-AGTACTGCAATCATGCAAAGCATTTTTCAAGGTGCTGGCATTACAAGGATGAATGGGATCTGTCGAACTTGTTTCCTAGGAGTTCAGAACCTACATAATC-----------TTGCTAT---------------TTTATAC-----TGCAACAAGAACTGCAATAAATTTGTTTATGACATACAGTGAGTAAATGGGTAGGGCTATGAGTTTTTAATAGTGGGC----------AAAATTGTTTAAGTGTTTTACAAACCTATAAGAACCTTAAAAATTAA----------AGACTAAGCTCTCTCTGTACATGAAAT----AATAAGGGAAAGAGACTATATCTCAGATTGATTAAAGAAGCAGAAGGGGCAAAGAAAATATAATGAAATAATATGCA------GAACAACAAAAGATAAAAGATGCAGGCAGGGA----GAAGAGTCCT---GCCTGGTATTAGAGAAAAGTCTTCCTTAAGGAATG----------AGAGCAGATATACAGAGTGGGACCACCCCAACAAAG---------------CAAAG---------------GAATTGTGCAACTGCAGATAGAAAAGGAAA-CAAACCGAAAAGTCGTTTTGGCAATTCCAGTGTAGTTAC-AAGG a score=2382 s hg19.chr6_ssto_hap7 4005708 45 + 4928567 ATTGGACACAGAGATCAGTGTGGTGACAACAGAAATGGAT-------GATGG s canFam2.chr12 5177541 52 + 75515492 ATTGGGCATAGAGATTAGCATGATAACAATAGGAATGGATCTATAGGAATGG a score=2527 s hg19.chr6_ssto_hap7 4005753 41 + 4928567 GAATACCATGCTCCTTTTGCATTTCCAGATGTGCATTAGAA s canFam2.chr12 5177801 41 + 75515492 GGATACCGTGCTTTTTTTTTATTCCCAGGCATGCATTAGAA a score=12414 s hg19.chr6_ssto_hap7 4005794 288 + 4928567 TTGGTATTTGATGAATAAGGGAGGAACGGAAGGTCTTTTA--GAAGGAATATATTTT-CTTTCCTTTTGTAGGTAACACCCAAAGGGATCAATCTTCCTATCCATCTGTGTGCTGGTTCTTTCTTTCTGGTTGAGACATTTTGTAGAAA-----------AAAGAGAGAAATTTACTGGAAA-TCCCCATCCCTTCACAAACAGTTGTTGCTGTTTTTTTCTATAACCAATAGGGATAAAGACTGAAGCAACATCACTTATCTCCGGCAGATACATCTGACCAGAAGGTCTTATATAAAGTCT s canFam2.chr12 5178043 289 + 75515492 CTGGTAATTGATGAATAAGGAAAGAACCTGAGTTTTTTTCCCTAAAGAATGTATTTTGCTTTCCTTTTGGAAATAACACCCAAAGG-ATCAGACTTTGTATTGGTGTAGGTGTTAGCT-------TGTGGGTAAGACACATTGGAGAAAGGGAAAGATAGAGAGAGAGAAGTATGCTGAAAAATCTCCATCCTTTCTCAGATAATTGTT------TTTCTCTGTATCCAATGGGGATAAAGAGTAAGGCAACATCACTTATTTCTAGCAGATCCACCTGACTAGAAGGTCTTCTTTAAAGTCT a score=13196 s hg19.chr6_ssto_hap7 4006082 281 + 4928567 TGGAG-AGAAGCTGCAGGAGAACAGGATGACTAAATTAGGTGTT-------GATAAGAAAGGCTGATAACTTCCTTTG-TGGAATAAATTAGGACATAA----GTAGTTAGCAAATAAAGAATATTTGCAGAGTAAAGCAAAATGTGCAGTGAGGATTGGAGGAGCTGGGCATTTAGAGTGATAGAGACATAATGCCTGGTTTTCCATTCCT---------GTCCCTGGGTAGTATTAAAAGCACAAATAAAAAGCTATCCTGCTGCTATCTGCCTGCTATTCTTGTTATACAAGAGATGGAG s canFam2.chr12 5179704 302 + 75515492 TGAGGTAGAAGTCAAGGGAGGGCAGAATGACTAAGTTAGATGACTATTAAGGATAAGACAAGCTGAACATTTCCTTGGATGGAATTATTTAGGACATAATTAGGTGGTTAGCTAGGAAAAGATATT-GTGGAGTAAAGCAAAATGTGGAGTGAGGATTGGAGGAACTAGGCATTTAGAATGGCAGAGACACGATGCCTGTTTTTTTGTGCCTATGTAGGAAGTCCCTGCTATGATTAAAAAGCACAATTAAAAAGCTCTGATGTTGGCATCTCCCTGCTATTCCTGTTGTAAAAGAGATGGGG a score=9047 s hg19.chr6_ssto_hap7 4006363 256 + 4928567 ACTGTCAGAGAGATCTATTATGCCAACTCTGATTGCCATAGGTTTATGCACAGACAAATGAAGGGAAaataaaatgatgagttattgtttattttacaccaggcactgaattttctacttccagacactttgtatcatt--tgattctcatcataaccctgcagtggatgtat-gtatcaCACTAtgttttcacttaactgctatatccccaacacattcaataatgtccatcacttatagtatttaataaatattGAT s canFam2.chr12 5180233 242 + 75515492 ACTATGAAAGAAATCCATAACCCCAACTACAGTTGC-------------ACAGATAGACAAAGGGGGAAGCAAATAGGGAATTATT---TATTTTCTACCAGGCACTTAGTTATGGCCTTCCAGACACCTGATTTCATTAATTATCCCCATAATTAATTTGCAATAGGTGTATCATATCACCTTATACCATCAgtttactgctacatcaccagcacatttaagaatg-ctaccactcatagtactcaataaataGTGAC a score=34901 s hg19.chr6_ssto_hap7 4006938 896 + 4928567 TACTGGGATATGATTAGGAAACCAAATGTGTTACATTTTTAACATTGTATAgtgacatagagcacacatatagtaagacatgtaaagcataaatgtacaacttaatcaatcattacaatgccaacatccatgaacccaccacccaaatcaagaaacag--catgaggccagcacc-agaagctc-tcccgtgcttcctcctgtctacattgccctcccttcccatcaagacaactcaccatc-agacttccatagcaatcccttcattgcttttcaatacaccttcaaaatctaatatttattcctaaacaTGCTTAGTAACATTATACAAATTAAACTATACAGTATGTTCTCTTTTGTGCCTATTTTGTGATCTAATAATTGTcaatttagtgacccggaaagaatcagcctgtcaataaatgctgctggatcagttgtatatccttactgaaaaaaaa----------------------------aagaaagaaagaaatttgacacctatctcactttatacacaaaattaattccagtagaaa-acatatctatccataaaaatcaatacaataaaacttctagaagacgatattagagaatatcttcctgatcttgaaatagaaaaagatttttaaaatagaatccaaaactca-gaatcataa-gaaaaaGGTTCATCAGTGGTCACAAATATAATGTATCTAAAACAGGGACAGTAAGAAATTACTGGGCATAACTAGCAGGTGCCATGGGATGTGCCTGGAAAGCTTCTCATGACGACCTACCATGAGCCTATCACACTCGTGCCAGGAGCCTCTCACCAG--GGGCTTCAGTGTTTGTGGTTAGGAAAA-GAGAAATAAGAACAACAGCAGAATGCACCCTTAGGTACTTTGGAAGTCACAGAAGGGAAAAGGGCAGGAAAATC s canFam2.chr12 5180475 880 + 75515492 TACTAGAA---GGTCAGGAAATTAAATGTTTTACATttttcatactttttagtgaaatagaccaca-atataaaaaagcgcataaagcaaaaatgtacaactcatttgattattataatgcaaacatccatggaacctcc--ctagatcaagaaacagaacattgggccaacacccagaagcccatcatatgcctcttcacatc----------------cccactgagataactcactatccaaactGGTACAGCAATCACTTCCTGGCTTTTTGATATGCCTTCACCCTGCGTTATTTATCTCTAAACATGTTTAGTAGCAGTATACAAATTAA---------------CTTCTGTGTGCTCATT-------------GTTTTCAACTGAGcagccaggaaaggatagtcttgtcaataaatgctgctgagccagttggaaatctttattaaaaaaaTATATGAGGGGAGTCGGCGCGCGGCCAATAAAaaaaaaatgaaatttcacacctctttcacaccatacacaaa-ttaattccaattaagatatatttgtatatacaaaaagcaatgcaataaaaccttcagaagataatattagaggctctctttataaccttgaagttggaaataatgcctaacataggatccaaagctcactagccataaagaaaacaattAGCCAGCAGTCACAAGTATAACATTT---AAATGAAGACAGTAGGAAATTATTGCACACTACTAGAGAGTGTCATGGGATACACTAGGAAAACTCCTGATGTAGATCTTCAACGAGCAGATGACACCGATGCCAGAAGCCTCTCACTAGCTGGGTTTCAATATTTTTGGTTAAGAAAAAGAGAAATAAGT-CGACAGGGGAGCACACCCTCAGATACTTTGGAAATCACTGAAGGGAAAGGGGTGGTTAAATC a score=13646 s hg19.chr6_ssto_hap7 4008143 304 + 4928567 AAGCACAGAGTATAACTGATGATattcaaagagcaaatgcttattgaacgtctcccatgtttcaaagagtgcagtaggagctaaggttccagggtgaaGATCTCATGAAGATCAATATATACCAGGAAAAAAAGACACATATACAGCAtacactccatacaccaggaactttct---------gcactattctctcctcagttcctagaaaaatgcctggatcaaaatag----ttattaatagttgttgaattaataaaCAATGTATTAAGTATAAATATAAACATTTATAAATTGCAATGAAAATACAAATGGGg s canFam2.chr12 5181791 314 + 75515492 aagcATGGAATACAATTGGTGAAattcaaagagcaaatatttattgaccacttcctatgttcaaaggactgtgagaagggttaggaatacCAGATAAAGATCTCAATAAGGTCAATATCTACCAGAATAGAAA--CAcacatagaacagaaactccatgagttggagactttatattctttgtgtaccatttcctcctcagt-cttacagaaagtcctggttcaaagcaggtaatcataagtagttgccaaattaataagtAATATATTAAGGATAAATATAGGCATTTATAAATCACAATAAAGATACAAATGGGT a score=1844 s hg19.chr6_ssto_hap7 4008789 74 + 4928567 aaaaagaaagaaagaaaaaagaaagaaggaaggaaagaaagaaagaGTGGGTATAATTTAAAAGTAACAAAATT s canFam2.chr12 5182282 40 + 75515492 AAAAAGATACAAA----------------------------------TGGGtataatttaaaagtaacaaaatt a score=64979 s hg19.chr6_ssto_hap7 4008863 1536 + 4928567 CAAGA-------ATAGCAGATAAA--GGATATATTCATACAGACTGGAGTATTTGGAGAAAACTTGAAAATATAGTTCATTTGCAGAAGTAAGACTTGAAGCAGAGAAG-AGGAGGAAATGATTCCGAGGAACAGCAGTGGGAAAGGAACCATCATGAACTGCATGAGTGAGAGCAGTACTGGCAGCGGGGGTGGGACAGGGAGTGGGTTGATTTAGGGAAAAGCCCAGATTGACTGGAGTGAACATCTAGATTAAAGAATAGTATAGGATAAGAGAAGATGCACAGAGAGGACCTGTTTTTATGAGAGGCCTTAGAAGCTGAGCAG-----TCACTTCTTA-GGAAGGTGATGAA----------CTGAAGTGTGC---------AAATGTAAAACAGCAAAATCATCTGTTGGTAAGGCAAGTGTCATATAGGTAGAGGAGGAGCATCAAGGCTGGGGAGGT-GACAGTGAGACTAGGGTACTGGTTTTACTGAGTGCCTTGTGTCCTTCCAAACTTGTGCAAAGTATTACTATCTAATGGGTAGAAAGAGAAAATGTGGAATTTTTTTAGACCTCTTTTCTTCTTTCAGAGATAGCATCCAAAGACTGAGTTCTCAAACCCCCAGGTTGGTTATCTATCCTGGTTCCCAGACTCTGTGCTTTAAGATGAAGCAGGTCAGTTTTCTGGACAAAGGGTCTTTATAAAAATCTCCATTACTTATCAGTTTTCTTCCTATGCAACCACTGAGTGAAGTAACATCATTTGTCTCCAGCAAATAACACTACTGCAATAGTCCCAGCATTAGTCTGGTTTCGAGACCCTGTGAAAACGTGGAGTAGGGCCAAATTATTAGTTATGTGGTGCGAGAAAGATATAATACCTGAAATTTGTAGAAAGAAACAGGTGA-TAGCTGTGTGGATTGACAAGAACTCTCCCC------TTTTCAAGTAAGATCCAGCATGCTTAATGAATGTAGAGCG---TGAATCAGGATACTTGTTCTTTTTCAGACATAGGTGGAAAGTCCCTGCCCAGGACTAAATGAAAAGAAAATTGCTTTAATGCTAGGATCTCATCACTGGT------------AGAAAACTAAAATCTGTGGTAGGGACAAAATTGAAAGGAAAGAAGAAACAG---------------------ATTGATTAAGGGTCATCTCCCCACCTGCTGGTTAT---AAGAACATGCAGGGACAATGATGGAAAAGAGAATCAATGgttccagggtctggttagccatttttcaattatctcatttaatctttataacaactctgaaaataatcttttgtaccccttttggaggtgaTGGTAGAAACATGGGAATTATACCCTGACTTGAAAAAGATAACATTTATTCCTTTGGGGGAACATTAAAAAGTTCATAC-----------TGCTGCATTTGTGCAAATCATTCTTCAAGATTAT-GCATTATTAGGATAAATAGGATCTGCAGATCTTGTTTCCTAGGAGTTCAAAGCCAACATAAACTTGCTATAATACACTGCAACAAGCGCTGCAATCGATTGGTTTATAAAATACAATAAGAGCACAAAT----TTGTGGGTTTTCAAACATGAGCCAAATTGTTAAA s canFam2.chr12 5182496 1576 + 75515492 CAAAATTTTAACATAGTAGAGAGATAGGATATATTCACAGATTTTGGAATATTTAGAGGAAACTTGAAAAT---------TTGCAGAAGTGAGACTTGAGGCAGAAAAGGAAGAGGTTGTGATTCAGAAGAACAGCAGGGGAAAAGGAACAATCATGAGCCACAGGAGCAAAAGCAGTACCAA--------GTGGG-------GTGACTTAATGTAAGGAGCAACTCTGATTGGCTGGAGTGAACATTCAGATTAAAGAACAGTATGCCATAAGAGAAGATAGGCAGAGAGGACCTGCTGT-AGAAGAGGCCTTGGAGGCTGGGCAGAGCATTTACTTCTTTTGAAAGGTGATGAAATGACTCATACTGAAATATATTACATTTATAAATGCAAAGCAACAGAATCAACTGTTGGTAACCCACGTGTCTTGTAGGCATAGGAAGACCATCAAAACTAGGAAGATTAACAGTGAGACTAGGGGGCTGGCATTACTGAAAGTCTTGTGTCTTCACAAACGTGTACAAGGTACTCCTATCAGATGAGTAGGGAAAGAAAATGTAAAGCTTTTTAGAACTGTCTCTTTTCTTTCAGGAGTAGCATCCAGAGACTCAGTCCTTGAA-CTTCAAGCTGCTTCTCTACTCTGTACCCCCAATTTTTTCTTTT----------AGGTCAGTTTTCTGTACAAA--GCACTACTTAAAGTTCCTACTACTAATCAATTTTTTTCCTA--CAACTGTTGGGTGGAATAACATGACTTGTCTTCACCAAATAATGCTACTTCAATAGCTCTAGCACTAGTCCAGTTTCAAGATCTTGTGAGAAAGTGGAGTAGGGGCAG---GTGAGTTACACAAGGAGAGGAAGGTCCAACACCTGAAGTTTGTGGTAAGAAACAGGACATTGGCAGTATGGATTGTCAGAGACTCTCCATATTTGGTTTTCAAGCACAATTTAG--------ATGGGTGTACAGTGCTATTAATCAGGATACTTGTTCTTTTTCAGGCATAGTTGGAAAGCCCCTGGCCAGAGTTAAATGGAAAGGAAATTGCTGTGGTGCTAGTGTGTCTTTGCTGGTAAAAAAAAAAAAAAAAAACAAAACTCTGTAGTAAAAAGAAGATTAAAAGGAGAGAGTAAGGAGGGAGTGAGGATGGGGGGAGAAAGAGATTAAGGGCCATCACTTCATTTGCTGATCATCAAGAGAAAGTGCAGGGGTGATGATGGAAAAGGCAATCAATAGTTTTGGGCCTTGATTAGGCATTTTAAAATTATCGCATTTAATCTT--TAAAAACTCTGCAAATAAAAATTTATACCATTTGCAGAAATGTTAGTAGGAATGTGGGAATTACAGCTTGATTTCAAAAAGAAAAAA--TGTTCTTTTTGGGAAATAT---AAATTTAGTACAACTGTATTAGTACTGCAATCATGCAAAGCATTTTTCAAGGTGCTGGCATTACAAGGATGAATGGGATCTGTCGAACTTGTTTCCTAGGAGTTCAGAACCTACATAATCTTGCTATTTTATACTGCAACAAGAACTGCAATAAATTTGTTTATGACATACAGTGAGTAAATGGGTAGGGCTATGAGTTTTTAATAGTGGGCAAAATTGTTTAA a score=68917 s hg19.chr6_ssto_hap7 4010715 1713 + 4928567 TGTTTTACACACCTACATGAACCTTAAAAATTAAAGATTGGAGCTCTCTATGTGCATGAGATAGTAACACTCATTAAAAAGGGCAAGTTT--GGTTAATTAAGACAGTAGAAAGGGTAGAGAAAATATAATGAAACGATATGTAAGGGAAACGAAGGATGAAAGATGCAGGCCGGGAGAGGAGTACTGTCTGATGGGAGTGAAGATTCTTCCTTCAGGAATGGAAGGGGATGCACAGAGTGAAGCCACCCAACAAAAACAA--GACTTGTATGGCTACAGAT-GGAAGGGAAATCAACCAGGAAATTATTTTGGAAATCCCAGTGTAGTTACAAGACTAGGAAGTAATGGTTAGAATGAAGAGGTCGGATTTACTGAGCACTAATATTCTTATAATCATGCTAGGAAATATCACTTGATAAAGAGAGAAAGATGAGTCGTTTTAGAAGGAATACATCTCTTTTCAGAGGCAGTACCCACAGA--CAGTTCTCAAACCTAGAATCTGCCTCATC--------AGTCTCAGTTCAGGTTACTTCGTTTTGGGGAAGGCATTCCAGCTTCTTGCACT-AGGCATTTCAAGAAAGAAAAGCATTCCTGGAAATCCCCAACCTGTCACAGGCATGTTTCTTCAACCAATAGGAATAGAGAATGAGGCAGCATCACTTGTCTCCAGCAGATATGTCTGCTAAGAAGGTCTGATCTGATCTCACGTCTTGGGGAGGAGGCAGGGAAGGAGCAGGATGACTCATAAGTGGTGAGAAGAATGGCT-ACGATGTAGTTTCACGGAAAGAAATAAGATACTCCATGT---GGAGACAAGATACCATATTTTGTAGTTGTGAAGCAGAGTAAAGACTGAGACTCTTAGGATTTAGTGTT-GGTGGGGGAGAAGAGGTTACCTGATATTTTTCATGCCTCTGTGGGAAGTCCCTGGTGAGTTTTAAAAGAGAAGGGCATGACTATGACGCTGGATTCTCCCTGCTAGTGATGCATGAGCACCTGTGGTGAACGAGATGGAAATGGTG-AAGAAGCCCATGATCCCACCTGCTGATTGTCATAGGACAATTTGAGGGAAAGTCACATTATTATGTACTGATTATTTTGTTCTAGCAAAGTAGTACTTCCGGGTGTATTA--TCTCAATTAATCAT-------------TATTTTTGTTAACTGCTGAATGTTC----------------------------AGTTCCCAGCACTCAATAGATATTTGTAAAATTAATAAATACATGAGTAAGTTACTAAGAATTAGCAATTTTAAGAGATCACTAAGAATTCGTGATTTTAAAGAGTGATTTTAAGAAATTGTAGTGATTTAAGAGATAATTATGAGGATTAAAATCCCGTTCTGCCTAAACTCAAAGCCCAGGAATTAAAATTATTAGTTTACTTGAGATCAGCAGGGTATCTAAAGTAAAA--------------------------------------------------TTCCAATACCCCTCTCATAAAAAGTCATATTTTACTTTATCAGAGCTCCT-TGGGGCTCAGTTAGTGAATATAGTTACAtggtagaatgggaataaaaacacggtattcatggtcatgaggttggaattctggcacccaacccacaccttggtcaagtaattttctcttttgagtgtctgtttcttcatcactaaaattaaagggttgaattgca--taatctctcaggtTAATACTTAACTCATTCCTGGACCATGATAAATAATAAAAAACATTTCATTTTTATTTCACTGTCATTAGTCATTTCAGTAACTGAAAATAC s canFam2.chr12 5184073 1714 + 75515492 TGTTTTACAAACCTATAAGAACCTTAAAAATTAAAGACT-AAGCTCTCTCTGTACATGAAATAATAA-----GGGAAAGAGACTATATCTCAGATTGATTAAAGAAGCAGAAGGGGCAAAGAAAATATAATGAAATAATATGC-AGAACAACAAAAGATAAAAGATGCAGGCAGGGAGAAGAGTCCTGCCTGGTATTAGAGAAAAGTCTTCCTTAAGGAATGAGAGCAGATATACAGAGTGGGACCACCCCAACAAAGCAAAGGAATTGTGCAACTGCAGATAGAAAAGGAAACAAACCGAAAAGTCGTTTTGGCAATTCCAGTGTAGTTACAAGGCTAGAAAGTGA----CAGAATGGAGTTTCTGGATTTGTAGAACACTAAAATTCTCATAGTCATGCTAGCAAATAACATTTGCTTAAGAGAGGA-----ATTCATCTT-----------CTCTCTTTTTA-AAGCAGCACCTACAGACTCAGCCCTCAAACCTAGAATCTGAGTCATCAGCTAGCTAGTCCAGGTTCAGGTTAATGCCTTCTTGGGAAGGTATTCCAAC-TCTTGCACTGAGGCATTTTAAGAAAGGAAAGTCATCCTGGAAATCCCCATCCCTTTA-------------TTGACCAATAAGGATAGAAAGTGAAACAGCATCACTTGTCTCCAGCAGACGTATCTGCTTCACAGGTCTGATCTGATTCTAGGTTCTAGAGAGAAAATCAATAGGAAGCAGGATGACTGATATGTGGTGAGAGGATTGGCTGACCACCTAGTTTCAAGGAAAGAAAT--GATATGTCATGTTGGAGAGCCAAGAAACTACATTTTATAATTGTGAAGCAGAGTAGAGAGTGAGGATCTAACTATTTAGTGTTGGGTGGTGGAGGGGAGGGTACCTGATATTTTTCATGCATCTGTTAAAAGTCCCTGTTCAG-TTTAAAATAGAAGGAAATGGGTATGACATTGAGCATTCCCTGCTAGTGATATGTGAGTACCTGTGGTGGACAAGTAGAAAATTGTGAAAAAAATCCATGAT--CACCTGCTGATTTTCATATGACAATTTGAGGGAAAGTCACAATATCATATACTAAT--ATTTGTTCCAGCAAGGCAGGACTTCCAGATATGTTATTTCTCAATTAACTATCATAACAGACTTGCATTTATATTAACTGCTCAGTCTCCAGAATAGTCCTTTTTTTTTTCTTAGAATAGTTCTTTATATTCAATATATGGTGGGTCAATTAAttaataaatggg---gatactaagaattagtgaatttaagag---acataggatc---------------------------------------------ataattattaggatccaatcccagttctgcctacgtctaaaacccatgAATTAAAA-----AGATTATCTGAGGTCAA-AGTGTATCTGGAATAAAACTTGCATCTTCATTCTATGAATTTTACACACTTCAATTTAATATTTCTTCTTCCAGTATCCCTCCAATACAAAGCAATATTTCGCTTTGTCAGACTTACTCTGGAATTCAGTTAGGAAATA----TATATTGCAAATTAG----AAAAGAATTGTGTTCATTGTCATGAGATTAGAATTCTGGCAATTGATCTATATCTTCATCCA-TGATCTACTCTTTTAAGCTTCCATTTCTTCATCACTAAAATTAAAAGACGGAATTACATTTAATTCCCCGTGTTAACACCTACCTGGTTCCTGGACTACGATACCTATTAATAAATATTTAATTTCTATTTCACTTACATTCATCATTTCAGTAAC--AAAATAA a score=1979 s hg19.chr6_ssto_hap7 4014638 30 + 4928567 GAAACTGACTTTAACa-aaaataaagataaa s canFam2.chr12 5185834 31 + 75515492 AAAACTGACTTCAACAGAAAATAAGGATAAA a score=16057 s hg19.chr6_ssto_hap7 4014672 504 + 4928567 tttaattttCCTAAAGAAAAATAATTCCCCAATATGACTAAACAATGTTAACTAATAAAAA---CAGTCCTTTGTGGATTCTTTTTCAAGTACT----------------------------CCTTAGAGGCAAGATAAAAACATTATTTGTTGAAACCATTTTGGGGGTAATTATGCTTAGTGAAATTC---AATTAGCCAATACATTAATAGTACCATTTGCACT-TAACATAGAATTATGGAATGGGATCTTCACTCTTTGACTAAGAAATATAAGTCTCACGAATTAGGCAAGAA-ATATTGTAGCTTAGTTTTTCATCATTATATACTCATGAACTTTCCAACTCACTTCCTGAAAAACTGGCCACATAGCTACAATTATTTGTCACCCCCTTGGTAACTCCATGGGAATACTTTGCTGAAAGCCTGGCAT-GGTCCCCGTGCTTCCA------ATGCACAACTTCCTAATATTCTGTGCTTGCCAATTCGTAAGTAAGGGTGAAAAAGTTGAAACTCCTTGTCTTTTGTATGAACCAGTAG s canFam2.chr12 5194528 512 + 75515492 TTTAATTATCTCAGAAGAAAATAATTTCTCAATATGGCCAAACAAT----ACTAATAAAAATATTAGTCCTTTTTGGATTCTTCTTAAAGTattaagagattaagagattaagattaagagatCTTAATGGCAGGAATAGGATGTTA-TTGTT-AAACTATTCTTGGGGTAACTGTGCTCATTGTAATTCAGGAGTTAGTGAGTACACTGCTAGCACTCTTTGCCTTCTAACATAGAACTGTGGGACAGGATCTTCACTCTTTTGGTGGAAAAAATATATTTTCTAAATTAGACAAAAATCTATGTTAGCATAA-TTTTCATCACTATGTATTAACTAACTTTCCAATCCATTCCCTGATTTACTG-----ATAGCT-------------ACCCCCTTTGTAACATCATATAAATACTTCTCTGAAAACCTGGCATGGGTACTTGGGTTTCTATAACAGGTGGAGATCTGTATACTATTCTAGGCTTGCCAGTTCCAAGGCTATGGAGGAAA---------TCCTTGT-TTACATATGAACCACAAG a score=3732 s hg19.chr6_ssto_hap7 4015188 102 + 4928567 GTCACACCTCATGCAGGAAGTTATAGACCTAAGTAGGGTTTATTGAAGCGTCCTATAAATCTCCCTAGAATATAGAAATTCACGTCAAGGGAGGAGAGGAAT s canFam2.chr12 5195231 102 + 75515492 ATCATTCTTAATGGAGACAGGAATATCCTTAAGTGGGATTTATTGAAGTTTCCTATAGGTAACCGTAGATTATTGGACTATCTGTCAAGAAAGGAGAAAAGT a score=7862 s hg19.chr6_ssto_hap7 4021628 363 + 4928567 aaatgtgaacaggaaccatgatgaactatcatcttatcccagttggaatgcctactatcaaaaaggcaaaaaaaaaaaaaaaatgctggtaagga---ggagggtaaaagggaacttttatacaccattagtaggaatgtaaattagtacagccattatgggaaactgtatggaggtttctcaaaaaactaaaaatagagctatcatatcatccagcaatcccattacagaatatttagccaaaggaaaggtaatTTTtaaattttttaaatagaaaatttagattattttatgaactgaagtagggaagtatttcttaacaaggatgaaataacaaaaaaagtaaaaatttt----------------------aataaatatactt s canFam2.chr12 5268488 360 + 75515492 agatgcaaatcaaaatcacaatgagatatcacctcacacctgttataataactgttactaaaaagaccagagataaa------tgttggtgaggatatggagg----aaaggaacccttctacactattggttggaaagcaagatggtagcaccattatggaaaacagtatggtggttctttaaaaaattaaaattc-acctaccatatgattcagcaatcctactcttgggtacatatctgaagtaattgaaatc----agtatccctaagagatattgtacactcattcat-------cgcagga------ctattcatgaaagcaggatagcaaacaacataaatgtccttcaactgatggatggataaagaaatgtatatactg a score=752 s hg19.chr6_ssto_hap7 4022550 13 + 4928567 agaaagaaaaaca s canFam2.chr12 5269809 13 + 75515492 agaaagagcaata a score=12806 s hg19.chr6_ssto_hap7 4022563 290 + 4928567 gaaataactagaattctatcatgggaaaGTTTCTCAGAAGC------AAAATTCCTGCACCCTTGGTTATGGATCCACAGAGGCTTCATGTGAAGGGGGCATTCAGATCAAA-TGCTCAAAGTGGAGTAAGATATCATTGTCTTTCACAGAATCACTTAATAGACTGCAGCAGATCTCCCTTGACCAACCCCCCGAAACCAGTCAAATTCTTCATTTTCCCC-------AAAGTGAGGACTCCCACATTAAGAAGCCCTCAGT-ACTGAGATAACTAGCAGATACATTTTTCCATTGCAAGGGTG s canFam2.chr12 5203236 304 + 75515492 GAAATAACCA-AATTCTATCATGGAAAAGGTTTTTAGAAACTTTCTCAGAATCTCTTCACCATTTGCCAGGAATGCATGGAGGCTTCCTAGGAAGGAGATGTTCACATCAAAATGCTCAGAATAGGAAAAGACAACAGTGCCTTTCACCGAATTACTGGACACAGTGCAGCAGATCGCCCCAAAGCAACCCAGCAAGCTCAGTCATGTCCTTCATTTTCCCCATGTGATATAGTAAGAACTCTCATATTAAGGAACCCTCAATAACTGAGGTAATTAGTAGAGAAATTTATCCTTGGCTAGGGTG a score=57902 s hg19.chr6_ssto_hap7 4023364 1375 + 4928567 CAGATTCCCCAGTTGATAAGAAGAT--GCGTGAGTAAAGGAGGAAATTGAGAGATGCTTCCTTTCAGTGTCCAAGTGTCAAAAAGGATTCCTAGTCTTA-ATTAAAATTTAGATATAAGAAATCTACTGAAAGAAAGTGATTACAGAATTTACAAGTTGACTTGGTGATGCCTCAGCAAGAGCGAGAAAGATACAACAAACTACAAGACAGAAAATCCACGAGAGCTAAAAATGAGCATTTTGTGGTACCAATCTTGCTGTAAAAGCCTTAATATTTTGTGTATCTTTC-TCAGCACTAGACTAGAACATATATGCCAATGGGTAG-GAGACACA-TCTGTCACTGGTAAAGTTGCATAACAATTCACAATCCTATTCTCATACCCAAGTTACCACTAAACATTGCTCTTGAGTCAGTAGCTGCATTTGCCACCCTGGCTCAAAATATCAGCCATCACATTTAGTAAATTCTATCATACAAAGCAAACTAGCACTGATTTATCAGATTTACCATTGG-------------GTGGGGTGAGGAGGAGGGCGCTGGCTGACTTAGCCCGGGCCCTGAAGAGCCCTGT--TCCAGAGAATATACTTGTGCTCTTCCTCATGGCCCAGCATATGCTCAGGGCTCCAGGCATTTGCCTCCAGCAGGGGGCTCTT------CCACACTC---ACTCACAGTTGGCTGGGTTCCAATCTCTGTTCAAGTATGAGCAATGCAGATCCAGCTCCCTGGTTAATGTAGTCCTCACTGTTCAAGCCCAGTCTCT--TTCAGATGTTGAGACAGTGGCCCTAACTCTGTGTGGCTGGCCCAGAGCTGTGCACCTACCCTCACTGTCATACCACACAATTTCAGACCCT---TATTGTCATGGGTTTCCCATCAACTGTTTTTTCTTCAGGGGAAACCTCCACAATGTAGTTTCTAATATGTTGAATTCATACTCCAGAAAG-TGTCCTGTAGAATA--ATGTCTTACTGAAAACGGCCATCACAGCCAGGAGTCCTTAACTATGTTCTTTGACACCCTCAGTTACAGACAGTTTGTTGTCATGTTCTTCACATCTTGTGTGAAGATTGTTCAAGTGTTGGCCAAAGGATATGTCACTATCTAAAATTCACATCGAGAACCTAAGAGTAACTAATAATAAGTTTGATGCTTGTAGGAAAGGAAGAGCTGTTTGGTCACAGGATGTGGTTATTAGAACAGGGTTGTGGTTGAAGGGGAAGGATGATGACATAAATCTTTGCATAAACCACATTAACATGAAACCTTGATATTATCATTACATACTTTTCTTTTTATCTAATAAGGCAAAGTAGAGAAGTCAGCATCATTTGTCTCTGG--------CAGACTAAACTGTCAAGAAGGCATACCCAAGGT--TAGTGGCAGGGAGAAC s canFam2.chr12 5203542 1383 + 75515492 CAGAGTCTCCAGTTGATCAGAAGGCCGGTTTTAGTAAACAAGGGAATAGAGAGATGCTTCTTCTCAGTGTCCAAGGGTCAGAAAGGATTCATAATACTACATTTAAATTTAAAGAGAGGAACTGGACCAGAGCAAAGAGATTACAGAACTTGCAAGCTTACTGGATGATGCCTCAGCAAGAGTGAGAAAGATACAATAAACTGTAATAGAGAAAATCCAGGACAGCTGCAAGTGAACCTTTCATGGTACCAATCTCGTTTAAAGCTCCTTAATGTC--ATGTATCTTTAGTCAGTACCAGCAAAGAACAGGTATATGAATGGGTAGTGAGATATACTACCTCACTGATAAATGTGCATAGCAATACAAAATCCTATTCTTAGACTTCAGTTCCCAC-----ATTGTTCTTGAGTCAGTAGCAATGGAAACCAGCTTGGCTCAAATTACCAGCTCATGCATTTAGAAAAT-CTATAATACAGGGCAAATGAGGGCTGATTTATCAGATTTGCCATTGGCTAAATAGTAAGAGTGGAGGGAG-AGGAGGGTGCTGGATAATTTAGCCCAGGCCCTAAAGAGCTATGTGTTCTAGAAAACACACAGGTGCCCTTACTGATGGCC-AGCATGTATTCATA--------TGCTCACCTCCAGCAGGGAATCCTTTACTGCCCAGACCCTGAGTTGACAGTCAACAGGGTTCCCATCTCTGTTCAGGGGTGGGCTCTACAGGCCCAGCCTCCTGGTTAATGTAGTCTTTACCTTTCCAGCACAGTCTCTCATGTTGATGTTGAGACAGTGGCCCTAAGGCTGT----CTGGCCCAGAGCTGAACAC--ACTCTCACTATTGGGCCAAACAATCCCAGATTCTACTTATTGTAATGGGCATCCCC---AGTGCGTTT--------AGAAAATTTTGCAGTGTGGTTATTAATACGTTGGATTCAGAGGCCTGGAAGCTGTTCTGTAAAGTACAGTGTTTAACTGAAAATTGCCTTCACAGTTGGGAGTAGTAGCCTACACTCCTTGGATGTCT---TTACTTACAGTTTGCCCTGATGGTCCTCACCTCTTTTGTGAAACCT-TTGGAGAATCGACCAAAGACTACGTTATTGTCTAAAATTTACATTGAAAACATCAGAAAAAACAGTAACACCCTGGATGGTTGTTGGAAGGGAGAAGCTGTCTGGGCATAGGAAGTAGTTATTAGACCAGGGTTGAGGTAGAAGAGGAAGGATGATGACATCAATCTTTGCAGAACCCACATTTACATGAAACCATGATA-CGCTATTAAATACATTTCCTCCCAGCTCACAAGGCAAATGAGGGAAGCCAGCGTCATTTGTCTCTGGTTTAGTCTCCCACTAAACCGTCAAGAAGGCACACCCAAACCTGTGGTGGCAGACAGAGC a score=19766 s hg19.chr6_ssto_hap7 4026312 798 + 4928567 AAAACCTCTGCTCAGGGAAATT--TGTATGGAACATTTTAA------TATGGAGCATTGTGTAGAACTTC----------GCCTGTACTGTCCCTGTAGTGTCT--------TTTTTCCTCTCCTGCAGGTCTTCATGG-CCCCCTGGGATCATAGCCACAAAGTTTCTGTTCTCAATTGCGCTCTCAGGTCTACTTTTCAATTCTTTTACATAACTTTACTCATCTCTACCTCTCCCTTCCCTCCAAAGGGTTCTTTTTT-ATCCACTGTCCTCATGGAAGTAAAACAATGACCTCACCATACCTCACAAATAAACAGAAGAAGAAAGATGTGAATCTTCCCTAAATCTAAT---GTCTTAAACTTGAAACCCATGAACCCTGTGGTACTCAGGTGAGCAGAGATAGAAGAGCACTACGCAGGTTCACACTCTTTTCCCTGAAGAAGGAAAAACTCAGAAAAAAACTCCAGTCTGTAGTTTTAG---AGCAACTTTTGTGTGGGACCCTCCCAGACTGGAAATTTCTGGTCCCCCTCTTCTGGGGTTGGGAGCAAGCCCTGACTCTTCGGTGCCATGTAGCC-TGGTCTAAGCTCAGGAACATTTCTATGGTTTTTGACAAAGCTGCAAAATTTTATTAGCCTTAACATGTTTGAATCTGTAAGATTTCTAAGTAAGTCTGAC--AGTAAAATTTCAGATTGTTCAGCTGACCATGAA-GACTTCAAAGTGCATTCACTATTTAAAGCACCTGTAGATGAATTATGCTGGACTTGACCAAGAGTGTTTATCTGTGCATAAATCAAATAcagtcgactttacctatccaaagttcc s canFam2.chr12 5204944 719 + 75515492 AACATCTCAGTTCAGAAAAATCGGTGTATGCATCGGTGTATGCTGTTTATGGAGCATCGTGCAGAATTTCTGAAGTTACTGCCCATGCCGTCCCCACTGGAACTCCCCTGCCTTTCTTCTCTCCCACGGGATGTCATGGTCCCCCAGGGATCATGGCCACAAAGTTTCTGAACTTGGTTGGGCTCCC--GCCCACTTTGCAATCCTTGTATA-GATCTTAGTCATTTCTATCTCTCATTTCCCTTCACCGTGTGCCTTTTTGATCCACTCACTTCAGAGAACTAAAAGAATTACTCCTTTGTACCTCCCAGATACA---AAGAAGAAAAACATGAACACTCCTCAAATCCAATAAAGCCTTAAATTCAGAACCCATGGACACTGCTGT-------------------------------------------TCCTTTCCTTGCAAAAGGAAACTTTCAGAAGAAACGCCCGGTCTGTAGTGAAGGCACAGCAACTTTTGT-----------------TGAAA---------------CTTTTGTGATCGGCGGGAAGCCTTGACTCT--GGCTGCAGTTAGCAATGGTCTCAGCACAGGAACACTTGTTGGGATTTTGATGAAGCTGGAGAGTGGT-TTGGCCTCCAAGAGTTTGAACCT-----------AGTCTAGTCTGACTGAATACAACTTCAGAATCTTCAGCTGAGCATGGATGTCTCCAAAACGTATCATCTCTTTAAAGAACCCTTAG-TAAATGACACTAGAACTGACCAGGAGTGTTCATCCATGCACGCATGAA---------------------CAAAATGCT a score=24205 s hg19.chr6_ssto_hap7 4027563 705 + 4928567 GTCAAGTATGAGAAACAAAGAGAAGAGGAAGGGCCCATTTCTGTCCATAAAGCATCTGCAGAGGAGGTCTTAATCAGCTTCATTAATGCAAATTTCCACCTCAGGGCTTGCCCTGGAGAAACACCTCTAGATGAAGACAATTGGATGTGTAA----GTGGCCAGATCCACATGCAATTACTTCTTTAGAAGAATTAAGTCGTGGCTTGACAAATGGTCCCTTGTCTGTGATAGGAGCTGTGGCATAAATTCCCTTCTGGGCTACAGTGTAGCACAATTGCCCTCTCTCTATGGTATCattctgaagttagactgcatgggtttgaattctggctccgtttcttactattggtatagctttagtcaggtatccaacccttccatgctacaatttcctaattggtaaaatgggggagggagat-ataataatatacctacttaatggtatcattctaaaagttaagtcagttaatacgagtatggtaaaagcaattagaagaacatctggcatgtggtaagtactcaatacatatcaggcactattATCATCATTACTATCA-----ATTATTATCATCA--------------------TCATGACTGGGAGGTAACATGGCAATTTGTCGA----CATTTTCTTACCAGCCTGGCTGATAAACATCCAGTATATCTGAAGAGAAAGTTTCAGAGTCAAAAGCAAAAAGAGGCCTGGCTTTCTTTATATTGGGTGGGAAT s canFam2.chr12 5205663 652 + 75515492 GTCAGGTATGAGAAACAGAGAGAGGAGGAAGAGCTCTTTTCTACCCCCAAGGTGCCCA----------------------------------------------GGCTTATCGTGGTAAAACACTGCCAGGTGGAGGCACTGGAAGGTGTACATATGTGGCCCGAGGTCTAAGCAATTCGTTCTTTAGGAGAATT----TGTGGCCTAG------------TGCCTGTGAGGGGAAGTGTG-CACAAATGTCCTTCTGGTTCACAGTGCAGCACAGCTGCCC---CTCTagcacatcaccctgaggttagattgcctgagtttgaattctggcaccactccttcctgatggtacagccttaggcaa----------tgtccatgctacaatttccttgctggtataatgggaaagggagatgataataatatgcctacctcgtggtatcat---gaagatgaagacagtta------gtataggaaaagcacttacaagagtgtctggcatatagaaagcactctgcaaacattatacattattatgattatgattatgattatgattattatcatcactatttttCTCAATTAATTATCAGGCCTCGAGGGTAACCTGGCAATCTGTCTTTATTCACTCTCTCACTAGCCTGGTTGATTGGGATCCAATACCTCAGGGAGGAAAGTCTCCGTGTCAAAACTAAAATA--GCCTGGCTTTCTTTACATTAGGTGggaag a score=10761 s hg19.chr6_ssto_hap7 4028268 479 + 4928567 AAGGATGATGGAAGGAATATGAGAGGAACAGG------CAATTTGTCCTTTTGGTTTTATTTTAACT------ACCTCCAGGAAATTAACCTATTCTCACACATCTGGGGAAACAACCAAGTCCAT----TCCTTCACTTTAATTCTGATTTTTTTCCCACAATGTACACATCCCAGGA-TTTTTGGCTGACTTT-AAAACTACAAACATCAGGTTCATACCAG-------TAAGCCAAACTCATAGTTGATTTGGAGGTTCATTGTCAATTTAGTAAACAGTGCCTAGATCATAAGATTCAACTGGCACATCATGAAACTCACTGGAGACTGTGTGGACTAAAGAAATGAAGCATCCTCTACCTTTTCACAAGTGCAAACACATTAAGATGCTGCTATTTACAGTTACTCTTTCCCTGTAGACCTGTGGGCATGAGCC-ATCCTTGGTTTAAGTC---ACTTGATAGTGACTCAAAGCACAAAGCACAGGGTAATGCCTGTTCTTTC s canFam2.chr12 5206490 469 + 75515492 aggaagaaaggaaggagtagggaaggagtagggaaCAGCTATTCATGCTTTAGGTCTTGCCATTGCCCTGCTCACCTCCAGGAAACTAACCAGCAATAGGAAAGGAAGGCAAAAGGCTGGATCCACCTCCTCCCTCCCTCCCTCCCTGATTTCCTTTGCACCACTTACATGTCCCAGAAATTGTTGGTTGACGCTGAAAACTGCAAGAATCAGGCTTACACCTGATTGATTCAGGTCAAATGTGTAGTTGATTTGGGGGTTTATTGGCAGATCGGTGAGCAG-----------------------AGGGTATCCTGAAACTGAGCAGACA----------TAATTAAATAAAACTTCCTCTGCGTTTCGAGAAGTGGAAACACTTTAAGATGTCAGTATTAATAGCTGTCATTACCCTACCAACCTATGATTGTGAGCCCACCCTTGGTTTAAGGGCAGACGTGGTTGTGACCTAGATCAGAG------GGGTAATATGTATTCCCTC a score=15908 s hg19.chr6_ssto_hap7 4029088 486 + 4928567 ATCTGACTGTTGAACCCTTCACTTCTCTGGTTAGTTA------ATTTTCC---------AGACAGAGGGCGCTGAAAGG-ACACCCATGTATCATGTGTTATTTACAATTCCT-CACCCCAATCCCCAATCTCCACAGCCTCACTCCCTTCTAGTCAGGTTTTGGTGACCATTGGCCCTTGCAGAAGCTGGGTTTAAGTGAAAGCAAAATAAGACATTAAATATTTTCCTCTTCAGCAAATCAGAACCCGGTGGGAAGCAGCATCATCTGTCTCTGGCAGACTAAGCCATGAA-GACTGTAAG-AAAAAATATTTAGTGATGGAGGA-AGGAAAAAAGTATCCATTAGCAAGAGCAAAATAATATGAAAA------------GTATTTAACAAGGAATATAAAGAATCATCAAAGAAAATGTTATAAAACTTCTTTGAGACCACAAGAGATGAGTAAGTGGAGAAGAACATGGTGTTCACAGAGAGAGAAATATAGTAGATAGA--AT--TAATACAGTTTC s canFam2.chr12 5206959 502 + 75515492 ATCTAATTGCTGAGCCCTTTGCTTCTCT--TTGCATATGGAACATTTTTATCAATAGAGAAGCAGAGCATTTTGAAAGGCACACCCATATTCTACGTGCTATCACCTTTTTTTTCACCCAAATCTGCAAT-TCTATAACC-CAGTTCTCCCTAGCCAGGCTCTGCTGACAAT----CTTTGTGGAAATTGGGTTTAAGTGAAACCAAAATAAGACATTGGGTGCGTTCCTCTCAGACAAATGAAAACCGCATGGGAGGCAGCATCATTGGTCTCTGGCAGACTAAGCCACGAAGGAGCATAAGAAAAAAATGTTTA--GATGTATGAGAAGAAAAACGTATCCATTAAAAAGAAAACAGTAAAAAAAAAAATACTAAGCCATATATTTAACAACG-ATGTAAAGAGTCATCAGAGAAAACATTACAAA---------AGTACACCAAAGTTGGAAAAGTACTGCAGAATACAATATTCACAGTGAGaaatataatataaatatatgattataatGCAGTTTC a score=1566 s hg19.chr6_ssto_hap7 4032449 77 + 4928567 ACTTGCTTTTAAAGCTTTTATTAAAAATTATTTGTCATTTGTTTAATGATTAATGCTAAGGAAAGGTATCTGTATAg s canFam2.chr12 5217963 71 + 75515492 aattatatttaaaatttCATTTGAG--TCATTTGCATTTGATTTGCTGAGTAATGATAAGTA----TTTCTGTATAA a score=7798 s hg19.chr6_ssto_hap7 4032670 269 + 4928567 TTACAATATGTACATTAGGACTGGGGAGTTCCTGGGAGGAGAATCAATCACTGCTGGACATGAGGAATATCA---GTCTCCAGACAGTCAGCTCTGTAAACTGATTCAGATGATTAAGAATTTCAGTCCAAGTCAACAAGTATTTATTGATTACATACCATAGTCTCTGCAAA--GTCTTCATGAAATAACCTCTTAGGTTTAGCTGTAGAATACTCTGGAGCTATGGAGAAGGTAGATCTGGACATGGAGGTAATTTTGCATGTTTTTCAGTA s canFam2.chr12 5218701 246 + 75515492 TTACAATA--------------GGAGAGTTCTTGGAAAGAGAACCAATCACCGCTGGACCTGAAGAACGTCATCTGTCTCTAGGCAATCAGTT-TCTAGCCT---CCTGA--ATTAAGAGCTTCCAT-----TCAAAAGGCACTTGTGGATTATAGACCCTAGCCCTAGCACACAGGCCTCATCAAATGACCTATTCAGCTGAACTGAAGAGTTCCCTTGAGCAATAGTGAA---ATCTCTGCCCTTGGAAGCAATGTTTCAGGTTTTTCAGCA a score=5331 s hg19.chr6_ssto_hap7 4033309 119 + 4928567 ATTCAAGTGAGTTATTTAAAACAACTAGTTCACACACATAGGAGTTGTTGCTGATAAAGAATTGGTGGAAATGATATTAAAT---------AACAATTGTTTTTATAAGTTTCCTCTGCTTCATTAAT s canFam2.chr12 5218947 122 + 75515492 AGTAAAGAGAG------AAAGTAATTAGTTCATACATACAGGAGTTGTTGGTGGCAAAGGATAGGTGGCAGTGATATTAAATGAAAAACAGAAAAATTATCTTTGCAATGTCCATCTGCTTCATTAAT a score=14930 s hg19.chr6_ssto_hap7 4033428 415 + 4928567 TTTATGATTGTGAGAGGCCACGTGACTGGATATCAGCATACAGGACTTTGTATCAGAATATGAGCTTGGCAGTCATAAGAGA-TTACTTACAATTCTTCACAATTCTGTATTTTCATTTCTAAAACTCCATAAAGTTTTTATAAGAATAAATTGTAGCACCTTATTCATACTGGAATTCAACAGTTCTTAGTTCAAGTCTCCCTTGAGAAAGCTTCACTGTGTTTTTAGTGCAGATTAGTAAAGATAAGATCTTGACTGGTAGGTGAGTGGGTGGAATTTATTTCAAATATGGGGGCTCTCCAATGCTTGCACACCAAATTCATTTACAT---ATTGTCAAAAGCCAGAGGATATTtatgataagttgcaaaaa-tagctacaaattctttgtagcccattctgtcaagaaatgcaatct s canFam2.chr12 5219463 393 + 75515492 TCTGTCATT-tgagaggccatgtgactggataatagtacacaggtctttgcatcagactgtg--cttggtgaccataaggaagtcacttataattctcaaagtttctgtgctttcatctgtaaaTCCTAAAAGGTTTTTGGTGAGAAAATATCATAGCATCTAGTGCATGTTGGAATTCAACAGTTCTTAGTTCCCATCTCCTTTGAGAAAGGT--------------ATGGGGA-----GAAACTAAAATTT-----AGTGGGTAAATGGGTGGGATTCATTTCATATGTGGAAGCACAAGAACTCTCACATGCAAAATGTATTGATGTTTTATTCTCCAACACCAGAGAACATTTGTGCTAAGTTGAAAAAAATGATCCTAAATTctttgcagctcattctattaagaagtgtaacat a score=48884 s hg19.chr6_ssto_hap7 4033843 1376 + 4928567 attaatccacctcttgatgtgagctagtactatgacttgctttgaataacagaatgtaatggaagtgatgttgtgagttttaagtttcagctcaagacacc-tactgtttctatcttgcacaggagagctttccagcacct-gtga-taagcctcagcccgcctgccggataatgagcccacatggaTTGAGAGAGGCCTCCTATCCCTG-CCAAACCTATTGATGCTACAGAGATGTGAGGGAGCCCACCTGAGAAAAGCtgaacctgcccagtatataaaaaccactcaggtgggttgagcacaatttcctgtcttacagaatcatgaggagacactaaacaattatttgaagtcattaagttttggagtactttgttacataaaaaaatctgacagatacaAGAGTCTTCAAA-AAAATTTTGTTTTTCAGCAATGTCTTAGTGCTTCTGTGGCTCACAGGCTCCCACATGCCTGGAGTGCTACAGGGAGAAGGTTAAATGAATGAGGAAAAATTGATAGGCTTTC-CCAGCCCAAAGCATGATGTTATTATCATTATCATTATTAATATTTGTCTTTATATAGgagttaccacttgggaatagttgctatgtgtcagacactggattgtatttaa-ctttataatt-gtacttatctatcatttcattttaccatattaactatcatccaataattttccttctgttttatagaaaataaccttaaggctcaggtgttttgagtagcttgcccaaggtgatgcagctgataaaatgaaaagcagcatggaataca------tatttatcttattacaaaatctgtattctttttacttt-gctactctagactctctT-ATTATTGTGAAGCAGCTTTAACTACTGCAAGAC---AGAAGTCTTGGCCTTCAGAGTAAAACTTCACCAGTGCATAA---------------------------------AGTCAGACTAAAGCAATTTGAAAATATACAG--TCTTAGAGAATGTTATAACTGTTTATTAGAACTAACATAAATTCTACCTAA----TTTCTTAGAGGGCTCTTAATGATGTCAATTATAATGGCACATCCCATTGTT------ATTTTAGTCATGGAATCAATGGCATGTCAATAAGTGCTTTCTGAGAAAATTGTTGGACAAAGTACTATTTTGAACTCCAAATTTTATTCCCACTATTAATTTATGAAGAGGGCCTTTTCTCTTTCTACTAGACAAAGGTAACAAATTAGCTCTTGTTAAAA-TGGTATGCTGTTCTTCTGAGTCTCATTTACTTATTACTTTACCTTACATTAAAATTATGACCTGAAGACAGAAGCAACTGGAACAACGTTCACTGTGTTATGGCCGGATGAAGCAGGAAGAGGAAAGAGACAAAACTAGGTTAAAGATAGAAATGGCATCT s canFam2.chr12 5220046 1364 + 75515492 attaactcacctcttga-atgacatagctctgtgacttgttttgactactagaatgtaggggaagtggtgttgtgagtct-aaatttaggctgaagaagccctgcagcttctctcttggactagggagtcttcccataccttgtgggtaagtgtaagccactctgctggatgatgagcccaaatggagtg------gcccagtagactgggctgaagcAGTTGATGCCACAGACATGTAAA------CACCTGAAGACAAGGGAGCTCACCCAGGACACAGAGTGCCCT---GTGGGCGTGACACAATTTTCTGTCTTACAGAATCCTGAGAAAATACTAAAACATTATCTGAAATCGTTGCATTTTGGAGTAGGGTATTATATAGAAAAAGCTGACTGATACAATATCCTTCAAAGAAAATTCTATATCCTAGTGATCTCTTGGTGCTCCCTTGCTTAACAGGCTCTCACAAACCTACACTGCCATAGGGGGAAGATGGGATGA-TGAGGGAAAAGCTATAAGCCATCGCTGGCCTAGAACG----------------------ATTAATCTCTGTCAGTATACAGTTGTCATCATTTGGGAGTATTTTCCATGTG-CACATACTAGAGTGTATTTAAACCTTATAATTTGTACTTCTTTataatttcatttcatcatat-aactatcacataatggttttcatcgcattttatagaaaagtacactaaagcttgtatattctgagtgacttacccaaggtgatacagctgataaAGTCAAAAGTAGTTTACAATAAAAGTAAACATTTATTTGATGACCAAGTCCACCTTCTTCTTACTTTTGCTTCACTGGACTTGGTTGATTGCTGTGAGGCATCTCTAATTACTGCAAGACGGGAGAGGCTTTGGCCTTTGTAGTACAA-TTAACCGATGCATAATGATTGACATTGTAGCAGGGCAAAAGAGTTGAAAGTCAGAACTAAAGAATTTGAAAATACACAAGTCCTTAGAAAATGTTATATATATTAATGAGAACTAACCTACATTTTGTCTAAATAATTTCTTAGAGGGCACCCAATGATGTAAGTTATAATGACTCTTCCATTTATCTTGACAATTTTAA--GTTAAATCAATG-CAGG--AAATAGTGATTTTTGAGGAAATTATGAGACAAAGTAATATTTTAAACTCCATATTTTATTTCTACCATGAATTAAT------------TTGTCTTTC----AGACAGAGCTAAGAAGTTAGTTTGTGTCAAAAATGACACATCATTCTTCTGAATCTAATTCTCGAATAATTTTACCTGATGTCAAAATTATGACCTGAAGACAGAAGTGACTGGAACAG-GTTCATTGTGTGACT----------GCAGGAGGAAATGAGACACAGAGTCTGGTTACAGGCAGAGCT--CATCT a score=8467 s hg19.chr6_ssto_hap7 4035482 277 + 4928567 TTATCTCTTCAATGACTTTGCCTTGCTTGGACTTTCCCTTCACCCCACAGGATGTGAGGTCTGAAACGGCACCCT-CAACTTCCCATCCAAGATACAATTGTAATCCTACAT--TTAACACCCTAACTTCTTAACTGGAGTTGAGTTAT-TTAAACTGTAATTTTAATAGGTGAAATTCTGGACTACCATCCCAAAACATTTTGCTCATTTGCCAAAGTCCTAAGGAATTTCCATGAGATACAAAGCAGGTAAGTCTGGATACAGGAAAAAAGATAAAAAC s canFam2.chr12 5221410 270 + 75515492 TCGCCTAGTTAACGACATGGGCTTGCCTGAACTT---CTCCATCCCACAGGATTTGAGATCTGCAGCTAGACCTTGGAACTTCCCGTCCAAGATGCAATTCTGATCC-ACATGATTAGCACCCTAACTTCCTAATCTGAGTTAAATTTTCTTTAAAGATGATACTAGTAGGTAATATTCTGGAGCCTTGTCAAGAATGGTTTTGTCCATCTGTCACAGTCTTAAGTAATTTTGGCAAA----GAAATAGCAAAGTTTCAAGACAGCGAAA---GTAAAACC a score=19201 s hg19.chr6_ssto_hap7 4035759 531 + 4928567 ATGTTATTTGCTACACAGCCAGAAGGATATTGAGTGGCAAAGGGAGCACATCTCAAAGGGGACCTCAAAAACCCTCTTCATCCACAATGGCAGGAGCTAGAAAGAATAAAGCCACCTATAGGGTCAAATATCTCTCCTAATCATGTTAAGGCACTGGATTCTGAATTCGCACAGAAGGAGACTCTCACCCATCACTCCTCACAAGGACTCATGGCTTGCCCCATAGCatc--acatctgtgctgcttatcagctgcgtgaccctgggaaaagtccttcaactctctgggctttaatgtcctcctcggaaaatgagaacgatattaAAATATGACAAGTATATGTAAAGAGTCCAGGAATTTTTCATTCCAAGTGCAG------TGTATGTACATTTCTCACAACTGCCTAATGAGGTACC-tcaatgcctccagccaaagaccagcaggagcatacaagc-aatgaacaagtcagctttattgtttattgcaatgatggataaaactcaccatgagaatcatgcagcccctcagtaagaga s canFam2.chr12 5222163 523 + 75515492 ATGGTATCTCCTGCACAGAAAGAAGGAGGCTGCATAGTAAATGAAGCATGCCTCAG-TGAAACCTCAAAT-CCCGAATGATCCATAAAGGCACAGACTTGAAAGAATAAATCCACC-GTAGGGTCAAATATCTATCCTAATTATGTTAGGAC-CTGTATTCTGAATCCACACAG---GAAACTCCCTCCCCT--------ACAAAGACTCATGA-GTGACCCTTGTCattctgcagctctgc-actcactagctgtgggaccgtgagcaaattccttcacctttctgaaactcaatatccttcttgtaacttgggggtgataTTCATGTACTACAGGTATA-GTGGGAAACCCAGGAATTTTTCATTCCAAGTACAGTATATATATATATATATTCCTCACAGCGCTCAGATGAGATGCtgtcaatgcctccagccaaagaccatcaggagcacacctgagaatgaacaagttggtttaattgttcattgtcatgagggagaaaattcaccatggagaaaaacggggctctcagGCTCATC a score=10906 s hg19.chr6_ssto_hap7 4036470 272 + 4928567 ctgtttcctcagagaaacctcagctctgctcttaaggcttttcaacagcttagattaagctcacccagttttcctaggataaatt------cttaaagtcaactgattatgaacttcaatgacatctacaaaatatcttcacagcaacatctagattattagtgtttgactgaataactggggatcacagtctagctgacacataaaattgaccattaATCAGttgtaaggtttgtgcttgttttaggtgattttggggaggatttaagaaagaggga s canFam2.chr12 5222816 270 + 75515492 ctgagccatctgggtgcccACATCTCtgttcttaagactttacaactggttggtttggagtcatccagattatctaggaagacctcccttgctttacatcaactatttat----tttaatcacatctacaaaatattttcagagcaa---ttacaacattaatgtgtgattgaataactgaggactatagcttatc-aacacatgaaaccaacaatTTGACTGCTGtaaggtttgggtttgtgttaggtgattttgaggagaatataagatagaggga a score=4669 s hg19.chr6_ssto_hap7 4036742 268 + 4928567 ttttgcttttaattggattctgacagaaagtggagggttggggtggcaatgttatgattgggtagcttcataaatcctacctagagggacagaagactatcctgaggctacagacgtggttggtaaagaagcagtaatcactc-------ccaagagagagatgtgcctggtcatttttgtggtttggacaatattcatgttttgtctgggttcagacatgatgactgagcattcaggtgttctgtctc-------------------------aatccactgtg---ctcacagagtacctg s canFam2.chr12 5288364 255 + 75515492 ctct-ctcttagttg--ctttgtcagaaagtagtgg--tgggatggaag----------------------------------gaaggaaggaagactagattgaggctaaagctctaacttgtaaggaagcggcagccagtcatgtcatctagggaagaggattgcttggtcacacac---------acaatgtttgtgttttgtctgtgttcagacgtggttactaagtggccttgttttctctctctctctctctctctctttttcCTCTTGATCCATTATGGTCATCACAGAGTGGCTG a score=2587 s hg19.chr6_ssto_hap7 4037012 146 + 4928567 tgattctgatgttctatgaaatcctttatctccaacaggagaac--caaaaccacctgggagtgccagg-----ctagctgctagcaaccccaagccttcgttaattccatccagacagctctcaggtgtcaggacattttttttttgtttcA s canFam2.chr12 5288820 121 + 75515492 tgatactgctgttctatgacatt-tttatgttcacctggaaaacaccagaacc---tggctgtgcgtagtacacctggttactagta------------------------ccaggtggctcccagatgccagagc----ttttcctgtctca a score=28525 s hg19.chr6_ssto_hap7 4037161 876 + 4928567 TTTTTTTTACAGTCTCTGCCAGTGGGAGGTAAAACATAGTGCTGAGAATCTCAGAAGGCCATTTATCAAGGACAGAGTGTTT----CTAAATAGAAGCTCC-ATTAACTTATGGTTTCTATCACATACAGAA-AATAGATGCATC-----------------TGAAAAAATATAATAAGTTTCCCT-------------CTAAGGACTAACTTT------AGCTCAATCTCTAGTCCCTTGCAAATATTTGGAATTTTAATGGGGTAGGATAACAAGTTTTAAAAGATCTGGTAGTTTAAGAAAAGAAAACCATTTTTCTAAGTCAGTGCAATTCTTCTTATTCTACCCTCAACTTTTGACTTCATATTCTTAATTTTTTTAAAAAAAGT--------------TCTTAGAGTAAT----TGAGCCAGCCAAA----TTTTAAATGTAATCAATGTCCCCAAATTTCCTTTAAACATACTCAAGAAGCACCAAAACACAGAATGTAAGGATTACTCAATGCAAAGAAA----AACTGTATAAAGTCTCATACAGTTACTATAGACAGCACCATCTGACATTATAACCCCTTTTTATTGCCCTGGCCAAAACCACTTGGATCTTTTGAGTGCTTGAGAAGAACTTACCCAGCTGGATTTATACAAGTAGAAAAGGCAAAGGTATTGCTTGGCTACCACCAGCAGAGATCCCTAGGTAGGTGGGGTCAACTTAACATTTGGAGAATTCCACACGCACTATGGAAGCAAAAAGAAAAACAGCTAACCCACATACAGAAGCCAGAGAAAGGGCACGGGATGGGGACTGCCAGGGAGGGAAATCAACTCAGGGAAAAATTCCTGGAGGTTGTAACCCAGAAAATCCTGAAGGATGCCATATAACTGATGACCTCATCTATCCATGAGGCTGCTCAGAAATGCCCTCCCC s canFam2.chr12 5223348 910 + 75515492 GTCTTCCTATCATGTCTGTCAATACAGGGTATGATAGAGTACTGAGCAAT--AGAAGGCCATCCAACAGGCACAAAGTGATTGATTCTAAGTGGAAGCCCCTAGTATCTTGTAGCTTCCATACCTCTCAGAAGAAGAGAGGTATTCCTCTCTATTCCATATTTCTCAGAAGAAAATCGGTTCTTCTGGAAAAAGAAGGACTAAGGACTGCCTTTGTCTTCAGCTCAATTCCTAGTCCCTCACAATTATCTGGAAT----ACGTAGCAGGATAAAGAATATGAAAACTTCCAGGATGTCAGGGAAGGAAATCAATTT--CTAAATCACAGCAGTTCCCCTCATTCTACCCTCAACATTTGACTT-ACATTCTTAAATGtaaaaaaaaaaaaaaaaaaattgaaaacttaaaaataataCAGTGAAGCAGCTGAAGCAGTCTTTAATGCAATCAATGTCCCCAACTTGCCTTTAAATGTAGGCAGGCAACACTGAAACACAGAGCACAAAGAACGCTCAGGGTAGGGAAACCATGACAGTGAAAAATG--ATGCAATTACTGTAGGCAGCATTA-ATGACCTTATGAGTTCTTTT-ATCGTCCCAGATGCAAATACT-GGAGCTTTTGAGACCATAAGAGGAATTTA----ACAGGAATTACATATGTAGTAAAG-CAAAGGTAATCCTTGGTTACCATCAGAAGAAATATCCTGGTAGAT------AAATCAAAATTTGGAAAATTTTATATGCACTATGGAAGCAAAAAAAAAA---------TTACATGTGGAGGCCAGGAAAAGGGAAGGAGTTAAGGATTGCCAAGGAGGGGAATCAATTTATAGGAGAATTTTTGGAGGCTGTAACCCAGAAGAGCCTGAAGAAAACCATGTAAGTGATTATGTTATCTATACATGAGGCTACTCAGAAATTCCGCCCCT a score=39437 s hg19.chr6_ssto_hap7 4038369 1078 + 4928567 CCTCTTGCGAATGGCAGACATGCACACACCAGAGAAGATTCCAATTTAGTGTCCTCCCTCTGTTCATAGAACAATTCCTCAAGTCCACTCTGAGTAGAGGCTGCATCACAACAAGGGGATTGCCCTGTCTCCTTCCAGGGCTCTTAATACAAACTCTTCAGCTAGTAACTGAGATGTCACCATGGGGGATTTTTCTAATTGGCCAAAACCTGACCTGGCAGGGTTTGGTTTGGGTGTCTTCAGATTTCCTTGTCT-TGAGGCCCTCACAATTGCTCTACAGCTCAGAACAGCAACTGCTGAGGCTGCCTTGGGAAGAGGATGATCCTAAACAAAGCTCTGATGCTGGGGGCCCTCGCCCTGACCACCGTGATGAGCCCTTGTGGAGGTGAAGACATTGTGGGTGAGTGCATGAGTGAGGAATGTTCTCTGGAG------CTGAAAAACAGTAAATTGAAGG---AAAAGAGAGAAAGCGATTTGCAGAGAAATTGTAGAGATTTCCTAAGACCCCTTTCAGTATTAAGAGAAT-TAAAAATTATAGCTGTTCCTCCTTCAGGAAACCAGAGCCCCAACCTACTCTTTTTGTTATGTATGCTTTTGT---GTTCACTAAGGATGCTATTCTGTTTATA---TTATATTCAGTGACAACAGCCTGGAGGTCTCTATGTCGTTCCGTCATGATTGCCTCAAAAATTAGTGAAGTTTCCATCAGTGGat---------------aattt--tttattattaaaaatGTATGAAGtgtcattctcaaatttccctgaacaacttttgaagcttttcgtatgtctc--ctgtagtagatcttggggtc----gttccatcaattat--atactctatagatattaaaaaagttgcccgtttctttctctcagacttactcacATTTCCACA-TGGGAACTGGCACAGGTGGGGAGTGGGTAAAGGAGTCCAGCAGGCTGAATGCCTTCA-ACAA-TCATTTTACCACATGGTCCTCACTTACTCTCAGCTGCCTCATATGTGTCACCTCACAA--ATAATCAAATAAAATGGGCATGTAGCTAAGCTTTGTAAATAGTGAAAACATGG--ATGTCAATTGTTTTTACATATTT s canFam2.chr12 5224258 1080 + 75515492 CTTGTTGCCACCAACAAGCATACACATCCATAGAAAGATT--GATTGAGTGAGCCTCCTCCTGTCCTAGGTAATTCCCCCAGGTCCACTCTCCATGCAGGCTACCTCAGAACAAGGGGATTTCCCAGTATCTT--CTGGCTTCTTAGTACAAACTCTTCAACTGGCAACAGCAGTGTCACCATAAGGCATTTTTCTGATTGGCCAGAACCTGACCTGGCAGGTTTTGGTTTGGGTGTCTTTAGATTCCCCTTTCTGTTGGGTCCTCACCCTAGTTCTACAATTCAGAACAGCAAGTGTGGAGACCGCACGGAGAAGAGGATGATCCTAAACAGAGTTCTGATTCTGGGGACCCTCATCCTGACTATTATGATGAGCCCCTCTGGAGGTGAAGAGATTGTGGGTGAGTGCACACCTGAGGGATAT-----GGGGACTAGACTAGGGAAAAGGAATTGGAAGGGGAAAAAGAGAGAATGGCAT-------AAAATAGTGGAGACTCCTCAAAGGTGTTCTCAATATTAAGCAATTCTAAAATTTTTAATCATTCTTCCTTCAGGAAACTAGAGACCCAACCCACTGTCTTTGCTCCCTGTGATGTTGCAGAGTTCATCAAGGATATTATTCCATTTCTAATCTCAGATCCAGTGAATATAGGCTAGAGAGCTTGATGGCATTCATTCATGATTACCTTAAAGTATAGGGATGTTTCCATGTTTTGTTTTGTTACTAAAACCAAATTTGTTTTGTTACTAAAAAGTCATGAACTATTGCTCCCAAATGTTTCTGAAAACATTTTGAAACTTTCTACATGTTTTTTCTATAGTCTTACTTGGGGTAAAAAGTTTCATGAATTATGTATACTATGTAGATATAAGGAAGGGTATCCTCTTCTTTGACTCAAATTTACACACATTTTCATGCTGGGAACTGGCAT--GAGGGGAGTGGGTATACAAGCCCAGC----TGAATACCTTTAGACAAGTCATTCAACCACATGA--------------------CCTCATATATGTCATTCAGGAATAATAATTAAATCAAATATGTATTTAGAAATATTTTTCCAATAATGTAAACATATCCATGTCAATGAT-----CATACTT a score=1226 s hg19.chr6_ssto_hap7 4039447 17 + 4928567 CTATTACAGGTATAGCT s canFam2.chr12 5291107 17 + 75515492 CTATTACAAGTGCAGCt a score=3745 s hg19.chr6_ssto_hap7 4039467 149 + 4928567 CATTTTTCTTTAGCAAAATAAGGGA------TCCTTTTAGTTTAAAATTGAGAA------GTAGAAAAAATTGGTAAATTAAATCATTTTATTCTCAAATTATCAACCCAAATTACCTGTTCTTCACCTCATCT----AATAAAGTCCTATAAAAAGAAAAGTGg s canFam2.chr12 5291573 148 + 75515492 TTTTTTTCTTTAACAAAGTAGAGAATATCTTTATTTTTATTTTACAATTGAGAATTTTATGATGGAAGACTTGCTTAATTAAGTTATATTGTATTCAAATTAT--------ATGACCT---------CTCATCTATAAAATCGAGACCCTTAAAAGAAAAACTGG a score=5703 s hg19.chr6_ssto_hap7 4040015 141 + 4928567 ggaagCACAGATTAATTATTTGGTCTCTTTGTCTCCTCTGCCTTTGTCGTCCATCTCTTCCCAC-CTCTCTTCATGCATTCCTTTCTCCCTCTTCCCTTTCAGGATCCATCTCTGA-----CTCCCTGCTCCTTTATAGAGATGGAC s canFam2.chr12 5291721 147 + 75515492 GGAAGCATACACTAATTACTTAATCCCTAAGGCCCATCTCTCTTCATTGCCCACCTCTTCCCACTTTCTTTTCAGGTATTCTTTTATCATCCTTTCCTTCCAGGATCTATCTCTGGTCTTTTTTATTGTTGTTTTATTGACATGAAG a score=51772 s hg19.chr6_ssto_hap7 4040156 1682 + 4928567 AGTGAGTTTGTAA-AACAAAAGTTGAAAAGTCAGATAG--TTAAAAGGGGAAGTGAACTGGAAGGTACTCTAAACTTTCACAACCTTATTAACCATGGCTGCTCCCATTCTGATTTTGTTCAGCAGTGGAAGTTTCACCCGCTCCTCCAGAGCGCTTGGCTTCTTTGTTCCAAATTTCCTTTCTTCAACCTCACACCAGAGTGCCCTGGTcaggctcagctcatccattaggcacaatgtgggcagtgcaggggaccctccagactgtaaagccacatgagaatgttttaactccttttaaaattataaaaaaatgaaattgtagagcctaagaaaatgttttaacttttaattcagcctagattatatt-gtctttataccaattcagtcataaaatatagttttccatatttttatggaggaaggcgtccacacaagcaagagtgcttggggctcacatgtcagaacgcaaccctgATCATGGCTGATCCTGGCCTTCGTGTGGTTCTGCTAACTATGTGCCTGTCAGTCT----TCCCCAAAATCTATGTGGTCCTCAAATATAACAACTGtcattcaatacacatgtttgagcacccagtgagctaagttttaaggattcaaagatgaaaagtcatgctgtctcctctgcaaagggtgctcagactagtgatggaaacagTATGGGATGAAAGAAAGCAGAAGGC-CATTGCTGAGCAGG-CAGTGGACTCAGCAGAGGCTGAAACTATACAAGTGACTTGGTTCCAGCTGGGCCAGCAGGATAA--------------------------------CCAGATGAAAAGAAGGATTGCATATATTCCATATATATTTATGTTTGAACAAAGAGTCAAGGTTTATTGCAAGGATAAGG--------------AGGTTTTGTTGGTGGCCTGTTAAG--ACCATCCAGGGTGG-------TCATACTGGATAGGGAAGAAGGTGAGCTGGAAGAGGAACAGACAAACTTGGATGGCCAGATGTTGAGATGGAGGAGATGGAGGTCATAACGTGGTCAAAAACATGTT-GATGAGAGGACTTAGCTACAAAGTTGTTAACTTAAGCAGAAACCTCAAGGATTGATTTTATGATTTCTCCAGGAAGTCCTAAAAGTTAATTTCATTTCAGGGAGAAAAACAACAGACCACTGCAAAGACCA-GGAACATGAAAGGATAATGTAGTTTGGTTTGCTTGGCAGAT-----ACTTGTGAAAGATGTTGGACTGTAAGGctgtcaatatcctcctcgcagaacttactacagtacattgtatctgctcccttacctacctgactctcccactattcagtttgttccttaatggtaga--ccatgcctgatcggtgttttacacatcccctgct-------atgtctgata-cttgtggatgctcagaaagtgGGGAAGGAAGGAAAGATACGATGGTAAAAG-GCTTACACATGTCTTGAGCAGAATGTTCAGTTTGGCTCATTTGGCTGGAGTCATACTGCATGGCTGCCATTCTGCTCTGGCATCCTCAGAGAAGCACACTGCCCATTAAAGGAAAAAGG------------GTGAATACAAATGTTGAGTCAGAACACTGCAGACATTTAGTAACCTCCTTCAGAGGAAAAAAAA-------AGGTGGGGGGAATGACAGAAATCCAAAAACTAGTAGAGCTTCCACTTTTTCATTTCAGAAGAAATCAGTTACTCTCCTCTAAGGACCATTACTATTAACAAAA s canFam2.chr12 5225974 1640 + 75515492 AGTAGGTTTGTAACAATCAAAGTAGAAAAACCAAGCAGCCTTAAGAGGGGAAGTGAAATGGAGCATACTCTAATTTTCAACATCTTTGTTAGCCATGAGTGTTCCCATCCTAATTTAATTTGGTCAGGGAAGTTTGCCTCACTTTGCCAGAGAACTT-------------CTAATTTCCTT-CTTCAACATCATGCCAGAACATCTTGGTcaggctcaacttatccagtaagcaca---------gtgccaagggcctatgatgcttctagggcaccataaaatgttttagtttcttctaaaatta-gaagaaatgaacttatgaggtagaggaaaatgttttaatttttaattcaacctggattatatttatctttataccaatgcagtcacaaagtgtgatttctaatatttt-atgaggaaagggaccca--------atagtgattagg-ctcacgagtcatacgacagccttgACCACTGCTGAT--TAAGTTCCGTATGGTTTGACTAGCTCTGTGTCTATCAACCTCCACTCACCCAAATGTCTGTGATCTTTGAGAATAGCAATTGATATTCAATACACACTTTTGAGCAAACAGTGAGATTAATTTTGGGGATTCAAAGATGAAG--------------------------------------------------------------GAAAGCAGAAGGAATATCGCTGAGCAGAACTATGGACCCAGCTGAGGCTGAAAATACAGAAGTGAATCAGTTCCAGTCAGCCATGTAGTGTGATGTTCATCAACAAATGGTGCCTTGGACAAGCACCAAATGGAAAGAATAATTGCATATACTC-----------ATGTTTGAAAAAGGAACCAAGG---GAACCAAGGATAAAGGCTAGAGGATGCAGAGGGTTTGATGGAGGGCCTTTAAGTAATCACCAAGGAGGGGGGCGGGTCATGCTGGGCAAGGAAGA----GAGTTGGATGAGGCATAGATAAATCTGGAAAGCAAGACATTGGGATGGAGGCGTTGGAGGTTATAGTGAAGCCAAAAAAATGTTCAATGAGACTAATTAACTGAAATGTTGCTAACC-AAACAGAAACTTCCAAAAGGAATTGGAGG---TACCCAGGAAGTCTGAAAAGATAGCTTTGTTTCAAGGAGA-------CACACCCCTAAAAAGGCCAAGGAACATACAAGAAGAATGTGCTTTGGTTTGACTGGCAGATGAGATATTTGCAGAGGAAGTGGGAGCATAAGACTGCTGCTGT--TCCCTGCAGGACTCACCACAGCGTACTGTATttgttcctgtactcacttgactctcccaccacgcaataaactccttgaagacagaaaccatgc-tgatgggtgtttgac----tccctgctcctcatgatgtctgacatcttgctgatgttcagtaaatgAGGAAGAGCATAAGGAGGAAATGATAAAAAAGCTCACATATCTCTTTACAAAATTTTCTAGTTAGGCTCACCGGG-TGGAGTCATACTGC-----TGCCATTCTACTTTGGCATCCTT-GCAAAATGTACTGTCCATTTGAAGAGAAGGGCCACAGTTTACCAGGAGTCCTAAAGTGATAGAAATGCAACTCAGA-ATTAGGTTAGGGGGTTACAAGGGAAAAAAACCCCACGAGGGATGGGGAGTGACAGAAATCTAAAATCTAATGAATGTTCCATTTTGT-ACTTCTGATGAA-TCAAGTGCTCCCCTCTGAGGATTACCATTGTTAACAAGA a score=77847 s hg19.chr6_ssto_hap7 4041838 1688 + 4928567 CAGAGACCTTAGAAGGAAGCATTATTTACTTATCATATATTTTGTAATGTTATTACCCTTCTTGTTATACTCTTTCTTATACCCTACCATTGTTAGCAGAAATTATTTTAAATTAATAAGATCCTGCATGCTTTTCCTTTTTCTAAAAAAAGAAAGA--------------------------------------------------TCTCTGTGTAGAATGTCCTGTTCTGAGCCAGTCCTGAGAGGAAAGGAAGTATAATCAATTTGTTATTAACTGATGAAAGAATTAAGTGAAAGATAAACCTTAGGAAGCAGAGGGAAGTTAA-----TCTATGACTAAGAAAGTTAAGTACTCTGATAACTCATTCATTCCTTCTTTTGTTCATTTACATTATTTAATCACAAGTCTATGAtgtgccaggcactcag-----------gaaatagtgaaaattggacacgcgatattctgcccttgtgtagcacacaccgtagtgggaaag-aaagtgcacttttaaccggacaactatcaacacgaagaggggaggaagcaggggctggaaa---tgtccacagACTTTGCCAAAGACAAAGCCCATAATATCTGAAAGTC---AGTTTCTTCCATCATTTTGTGTATTAAGGTTCTTTATTCCC-CTGTTCTCTGCCTTCCTGCTTGTCATCTTCACTCATCAGCTGACCATGTTGCCTCTTACGGTGTAAACTTGTACCAGTCTTATGGTCCCTCTGGGCAGTACAGCCATGAATTTGATGGAGACGAGGAGTTCTATGTGGACCTGGAGAGGAAGGAGACTGTCTGGCAGTTGCCTCTGTTCCGCAGATTTAGAAGATTTGACCCGCAATTTGCACTGACAAACATCGCTGTGCTAAAACATAACTTGAACATCGTGATTAAACGCTCCAACTCTACCGCTGCTACCAATGGTATGTGTCCACCATTCTGCCTTTCTTTACTGA-TTTATCCCTTTATACCAAGTTTCATTATTTTC---------------------------TTTCCAAG---AGGTCCCCAGATCTTCTCATGGCAATTGCTGAAATTTTATCATTTCTCATCTCTAAAATCACATATTCCAATGTAATACAAGGGTCTTT----CCATTATGCATTCATTAAATCCTTCTAGGAGAGGTCTCATCAACCTTCTACTTTATTAAACATGCCCACAGAGAGAAGGGCACAGGAGTAAAGCAGAGGCAATGTGT---CGTTGCTCCCAAATGTGTCGTTACAATGTGTCGTTGCTTACCCAAAGAGGTAAATAAGGCCTCTTTGACCAGCAGGAGAGGAAATGCTGGTAGGAAGACTCTTCCAGGATGTAATGCAGAAGAAGCTCAGGGCAGAGCTATTCACACTTTACACCAGTGCTGTTTCCTCACCATAGAGGTTCCTGAGGTCACAGTGTTTTCCAAGTCTCCCGTGACACTGGGTCAGCCCAACACCCTCATCTGTCTTGTGGACAACATCTTTCCTCCTGTGGTCAACATCACCTGGCTGAGCAATGGGCACTCAGTCACAGAAGGTGTTTCTGAGACCAGCTTCCTCTCCAAGAGTGATCATTCCTTCTTCAAGATCAGTTACCTCACCTTCCTCCCTTCTGCTGATGAGATTTATGACTGCAAGGTGGAGCACTGGGGCCTGGATGAGCCTCTTCTGAAACACTGGGGTAAGGATGAGTTTCACCATTTTTTGATGCTTTCTTGTC--TGTCAAGTTCAGAACTTCCTGCCTTTTA--CTCTATATCCCAAAACT s canFam2.chr12 5227811 1749 + 75515492 CAGAGACCTTAGGAG----TATTGTTTATTTTTTATAAACTTTTTAACACCGTTGCTGTCCTTGTCATACTCTTTCTTATACCCTAAAATAGTTA--AGAAACTCTTTTAGAAGAATACAATCCTTCGTGCTTTT---TTTGACaaaataagaagaagcagaagaaggcgcaggagagaggaggaagaaggaaggaaggaagCATTACCTCTGCAGAAAATATTCTGCTCTGAACCAGTCCTGGGGGGAGAGCAATCA--ATGTATGTGTTATTAACTGATGAAGGAATTAAG----AGATAAAACTGATGAAGCAGAGAGAAGTTAAGTGAATTTCTGATAAAGGAAGCTATA-GCCATGATAATTTATTCATTCCttctttcatttcattgtaatattta-tcataagtctactgcgtaccaggtgctgagctacacacacgggaagagcagcagcaagactgttgtaattgtgctctcacggagcatacacgatagtggaaaagcagagcgta-ttctgactggacaactaccaacacggagagag-agggggcaggtgctgggaaacgtgcctaaagACTGTGCCAAGGATGAAGCTCGTAATATTTGTTTGCCCACAGTTTGTTCTGTCACTTGGTTGAATAAGGTTCTTTTCTCCCTCTGTTTTCTGC-TTCCTGCTCCTCACCCCTGCTGCTCAGCTGACCATGTTGCCTACTACGGCATAAATGTCTACCAGTCTTACGGTCCCTCTGGCCAGTACACCCATGAATTTGATGGCGATGAGGAGTTCTACGTGGACCTGGAGAAGAAGGAAACTGTCTGGCGGCTGCCTGTGTTTAGCACATTTACAAGTTTTGACCCACAGGGTGCACTGAGAAACTTGGCTATAACAAAACAAAACTTGAACATCATGACTAAAAGGTCCAACAAAACTGCTGCTACCAATGGTATGTGTCTACCATTCTGCCTCTCTTCACTGAATCTGTCCCCACATCCCAGCTCTCTTTCCCTTCCTCCCTAGCATAGATACTCTTCACTGTTTTCCAAGGATATTTCCCCAGATCTTCTCATAGTAATTACTGAACCCTCATCCTCCCCCATCTGAAAACTGAAATATTGCCATGTAATGCAAGAATCCTTACTCCCATACCATGTTCCTTGAATCCCTCAAGGAGACGCCCTGTGGATATGCTACTTTAATAAGCACACCTGCATAGAGAAGGGCTCGGGGGTAAAGTATAGGCAGTGCATATACAGCATTCCCAAGC------------------------------AGAAGGTAAGCAAGAACCCTTCCACCACAGCATGGAGAACTGTTGCTGCGAGGGCTCCTCTAGGACACAATGCAGAGC---CTCAAGGCAGAGTTATT-GCAATTCATGTCAGTGCTGCTTCCTCACCGCAGAGGTTCCTGAGGTGACTGTGTTTTCCAAGTCTCCTGTGATGCTGGGTCAGCCCAACACCCTCATCTGTCTCGTGGACAACATCTTTCCTCCTGTGATCAATGTCACGTGGTTGAAGAATAGGCACTCCGTCACAGAAGGGGTTTCTGAAACCAGCTTCCTTGCCAAAGGGGATCATTCCTTCTCAAAGATCAGTTACCTCACCTTCCTACCTTCTGCTGAGGATATTTATGACTGCAAAGTGGAGCACTGGGGCCTGGATGAGCCACTTCTGAAACACTGGGGTATGTATGAATTCCACC-TCCTGTGGTGCCTTCTTTTCTTTGTCAAGTCCAAAATATCCTGCCTTTCAGCCCCGGAGTCTCAAGGCT a score=104247 s hg19.chr6_ssto_hap7 4043637 2810 + 4928567 CCACTTCATGGGTTTCTAATAACAGACTTCACTCTCCTCCCTAAGCTGGGGGCCTTGAGTCTTTGCAGAGCCAAC--------------CCTCTA--CCCCATCCCATCCCACACACATGCACATGAGCAAACTCTGCATTCTGACCTCAACAACTTCACTTCCACAGAGCCTGAGATTCCAACACCTATGTCAGAGCTCACAGAGACTGTGGTCTGCGCCCTGGGGTTGTCTGTGGGCCTCGTGGGCATTGTGGTGGGGACCGTCTTGATCATCCGAGGCCTGCGTTCAGTTGGTGCTTCCAGACACCAAGGGCCCTTGTGAATCCCATCCTGAAAAGGAAGGTAA-GATTGAGATTTGTTAGAGCTGAAG---------------CTGCAGGAAGGAAAGTGGGAGGAGGCTGTGGACATGAATGTGGTT-GAAAGTTGTAGGGGAATTGGGAAGTGGCATGATGATGACACAGGAGCCCCCTTGGACCCATCGATCTCATGTCTGTCCTGTTGCAGGTGCATCA-----CCATCTACAGCAGCGGAAGAGTGGACTTGCTACATGACCTAGCACTATTCTCTGGCCCGATTTATCATACCCTTTTTCTCCTGCAAATGTTTCTCCTCTTACCTTTTCTCTGCTTTTTTTTTCTTAAGCTTCTGTATCCCCTCAGAGCTCACAAATGCCTTTGAATTCT-----TTCCCTGACCTCCTG-------------ATTTTTTTTTCTTTTCTCAGGTGTTACCTACTAAGAGATGCCTGGGGTAAGCCGCCCAGCTACCTAATTCCTCAGTAACATCGATCTAAAATCTCCATGGAAGCAATAA-ATTCCCTTTAAGAGATC---TATGTCAAATTTTTCTATCTTTCATC-CGGGGCTGACTGAACCTATGGCTAAGAATTGTGACACTCTCATGTTTCAAGCCAATTTCATCTCATTTCCCAGATCATATTTCATATCCAGTAACACAGAAGCAACCAAGTACAATATAGCCTGATAATATGTTGATTTCTTAGCTGACATTAATATTTCTTTCTTCTTTGTGTTCTCACCCTT-GGCACTGCCGCCCATCCCTCAATTCAGGCAACAATGAAGTTAATGGATACTCTCTGCCCTTTGCTCAGAATTGTTATAGCAAAAATTTTAAAACCAAAAAATAAGTTTGTACTAATTTCAATATGGCTTTTAAAAG-TATGATGGAGAAATAAATTAGGATAAAGGAACTTTGAATCACAAAAATATCAAAAGTAAAAATTTATTCTCAAAACTTTG-------CATTTGTAAA----GAATGATGACAGTAGAAGCCTTCCTCTCCCCTCCTCGCCT-TTAGGGAATAAAAATTCTTTAGGTAGGAAAAGAAATGGAAGTCAG----AAAAACATTAGAAAAAGACAGTAATGTGGGTATCTGAAAAGGAACAAATACTTATTCCTCACATAGGGTTAGTGACAATGGGAAAAGGGATAGGAGTAGAAGCCACAGACATATCTAGGAGCCCT-GAATAGAGGCGCAGTCTGCCTCACCTCCTGAATGAAGCTTTGCTAGATAACCACGTAGCTTTCCCTGTGCCACCCTTGCATGAAGCAGACAGTATAGTGGATATG---GCAGGATGTTTCTAGG----------------AAACATGCCGA------------------------------------------TACAAAACAATGCCAGTATCTTCAGAAATCCCCAGCCCTTTCCCCTCACCCCTCCTGGCTAAGGAAAGCACTAGCTTAT--GAGAGAAACCCTAGGAGGAACAACACAGTTGAGACAATGTAGCAGCAGCTGTGGGTGCTGTGTCCTCCACTGGATTGGCCATTTCCTAGCAGAAACTCTCCCAGAGGAAATGG-TCAGCAG-----------------------------------------------------------TGACCC-----------------------------------------------------------------------------CATGGC-TCTA--------------AACAGCTATGAAATCTGTGAGGGTATTTCTATCCATGCTACCTGCATCAGTGAGTTTAAATTTTAATT-GGAGAAAAAAGACAAAATATTAACACATTAATTgatacagtatagtttggtgcaaagaaccctaaatccaaatcaaggattcagtactttgaagctagtattttaaac--tttataaatgggtaaagtatctaacatttctg-gccttatttttctcttccacaatggaggagtaataatactttccttgcagagctattgatggaatttgaataatcttgatatatagtcaatgccttacatatagtaCATAAATACACAAGAAAACATTGTGGttatatttataattaatttatttaaaaGAATGGATCACGTTATATGAAAAGTACTTTTGTTTTTCTCAGCCCCTTAATGATTTAGGAGATTCAAATGTATGTAGAACTATGGGTGAATTTCTTTTCATATGATCATTGCAGGATATTGTTTTCTCCA--AAATGAGAGAGGCTGAGATC-------------------------------------------------------AATTGCTAAGAGAACTCTTAGGATGAGAAATCGTAATATTTCACTTTGGTTTTCAACTCTTTAAGAAGGGATATATTCCCTCCTTGTGGCCTATAAGTCTTTATTCAAAG-TATTTCATA-TGCAACAGATGTTTATGCATGTTTACTTTGGGGAGGA------GGTGAAGA----------AAGTTCAAG-GAGAAAATAATTTAAAATGCAGACTAGGAATCAGTAAG-CAAGGGAGTCTGAACAAGTGATCATCAAAAAAATGTCCATCACAgagcacagagcatttttagggcaatgaaactactctatttgataccacaatgtt-gaaaaatgtcattatgcatttgcccaaatccacagaatgtacaacaccaagagtgagac--aatgtaaaccatggactttgggtgataatgatgtgccaatgtaagttcataaattatagcaaatgtaccactctggagggaaatgttgctaatgggggaggctatgcatgtgtgggagca-gaatgtat s canFam2.chr12 5229575 3042 + 75515492 ACACTTCA-GGGTTTCTAATAACAGAGTTCACTCTCTTCCCTAAGCCTGGTGCCCTGAGACTTCATAGACCCAACAGCACCATCACCCTCCTCAACCCCCCACTCCATCT--CACACCTGTACTTGAACCAACACTGTATTCTGACTTTCACAACCTCATTTTCACAGAACCTGAGGTTCCAACCCCTATGTCAGAGCTGACAGAGACTGTGGTCTGTGCCCTGGGGTTGGCTGTGGGCCTTGTGGGCATCGTGATGGGCACCGTCTTCATTATCCAAGGCCTGCGCTCAGGTGGTACTTCCAGACATCAAGGACCTTTGTGAGCTGCACCCTAGAAAGGAAGGTAAGGATTCAGATTTGTCAGAGCTGAGAGTTGGAGACACAGTCCAGGAGGATGGAAAGTGGGAGGAGTTTGTGGACCCAAATGTGGTTGGAAGGTTATAGGAGAATTGGGAGAGGGGATGATGACAGCACAGCAGCCCCCTAAAATCCAACCATCT-ATGTCTGTCCTATTGCAGGTGCACTGCATGCCCACCTCCCAGAGCAGAAGAGTGGACCTGATAGGCCACCTAGCACTATTTCCTTGCCCAGTTCATCATACTCCTACTCT-CTACCAATGCTTCT-CTGTCACCTCTTCTCTG-------GGACTCAAGA-ACTATATCCTCTGAGCGCTAAC-----CCTTTAAATTCTACCCCTTCCTTGACTGCCTGTTTTTGTTTGTTTGTTTTCTTTTCTTTTCTCAATTGTCAACTACAATGAGATCTCTGGGATATCCCAACCAGTTACCTGATCCCTCATT-ACTCTGATCTAGCATTCCCATGGAAATAATAATTTTCTCTTTAAGAGATCCTTTAGATCAATTTTTCCTGTCTTTCATCTCAGGGCTGATT-------------AGGACTTTGGTCCCCGCTTTTATTATACCTTCCTAATCTCACTTTCCATATTATGTTTCATGCCCAGCAACACCAGAAAATGCAGG-----TATAGGCTGATAATATTTTGATATCTTAGGTAAGGATAATGGTTCTCTCTTCCTGTTATTCTCATGTTTGGGTACTGTCACAC-TCCCCCAATTCAGACACCAAGAAAAGTAATATAAGCCCTCTGACCTTGGTGTAAATTTGGTATAGAAGAAA-TACAAAGCCAAGAAATAAGTTCATACTTCTTTTAACATAATTTTAGAAAGCTATGACAGAGAAATAAGTTAAGATAAAGAAATTTTGAATTTCAAAAGTACCAAAAG-ACAAATTGTTTTCCAAAACTTTAAAATTTCAATTTGTGAAGAATGAATGATGATAGGAGAAGCTTTCCTCTCCCATCCTCACCCATGAGAAGATAAGAATTCTTTAGGCAGGAAAATAAATGGAAGTCGGGTAAGAGAGCATTAGAATAAGACCATAAAGTAAGTACCTGA----GGACAGGTACT-----------TAGGGACAGCAACAACAGGATGAGAAA-GGGAGTAGAAATCATAGACATGGTTAAGTTTCTTAGAACACAGGTGTAGTTTGCCTCACCTCTTACATGAATCTCTTCTAGATAAGCACGTAGACTTTCCTGTGCCGTGGTGGCATATCAGGGATAGTAGAGTGAGTATATCTGCAGGATGTTTCTAGGCAGATCATCTTAGGTCAAGCTCACTGAATCCCTGTGTATCCCTGTGCATCCCTGGGCACCCAAGGAAACTGCACAACACC-CCAATAACTCCAG----TCCCGTGCCCTACCCCTCATCCCTCTTGTATTTGGAAAGAATGAATCTATGAGAGAGAAAGGCCAGCAGGGACAACATAGTGGAGATAATGTACTGGCAGCTATGGATGCTGTATTCTCTTCTAGATTCATTGTCTTCTAGTGGAAACTTG--CAGAGGAAATGGATCAACAGATGGAATTTTCTGGTGTTCTTGAGTTGTCTAAAGCTTCACTCGGAAAGTGTATGTGACTTGACTCGGAGTCATTTTCCCTTTGAAATTATTTTAGGCACATATTGGCCTTAGTCTTTTCACTCTGCAAGTACTGTGTCCATACATGGTGTCTAAGGCAATATTATGGAACAGCTGTAAAATGTATGAGGCTGTCCCTGGCCACACCACCTGTATCAGTGAATTTAAAGTGTAATTGGGAGAAAAAAAAGACAATTTTAACACAATAGTTGACATAGTAGAGTTTGATGAAAAGAAACTTAAATCCAAATTCAGGATTCAGCACTTTATAGCTAATATTTTAAACATTTTAACACTGCGCA---TATGTA----Ttctgagactcatctttctcatccattctctggaagtaataatactttccttgc--agttattgacagaatttgaataatCTTGA---------------TTACACATAATATGGAAATACATAAGAAAACATTGC-----TATTTGTATCTGTATTATTAAAAAGAATTGATTATATCATATTAAAAGCACTTCTCTTTTTCTGAGTCCATTAATGATTTAGAAGATTCAA----AAATGGAGCTGTGAATGAATTTCTTTTCATAAGTTAAAGAGAGGATTTTGTTTTCCCCAGCAACTTAGAGACTCTGAGATTGGCTTAGGCTAAGAGAATATAGGGTATAGCAGTCAGCGACATGTCACTAGTGGAAGATTGCTAAGAGAATTCTTAGAACAGTAAGTCGTAAGAATTTGACTTG------AGGTTTTTAAGA--------------------------------------CCAAAGATATGCTATATTGTAACAGAC-CTTATGCATATTTACTTTGGGGATAATTCAAGGATCAAGAGTTACCTGTGAGGTAGAAGTAAGAGAATAATTAACAATGGAGACTAGGAACTAGTAAATTTAGGGAATCTGACCCAGAAGTTATCAAGAAAATGTAGGTAACAgaacacagagga-ggtcaggccagtgaaactactctgcattgtattataatggtaggtacatgccattacacgtttgttcaaacccacaaaatgt---acaccaagagtgaaccctaatggaaactatggacttt-ggtgataataatctatcaaaatagtgtcatcaattgtaataaatgtaccactctggtaagggatgctgatagtaggggaggctgtacctg-gtggggacacggatatat a score=3604 s hg19.chr6_ssto_hap7 4046793 67 + 4928567 ggatatctctgcagcttctgctcagtttttctgtgaactagcaactgctttaaaataaagtctattt s canFam2.chr12 5232618 67 + 75515492 ggaaatctctgtaccttccactcaattttgctgtgaaccttaaattgctttaaaataaactgtattg a score=25692 s hg19.chr6_ssto_hap7 4048748 602 + 4928567 ACAAAAAGGTAACCAATTATGATCCCAAATATATAAAATAAAACTTTTAGTATGAAAA----AGTCACATTAAAATGCGCAAATGTGCTAAG---AAATTTTTAGCAATAGGGTTTCAAATAAATTTCATATAAATTTCAATGATTCATAAGGCAAGAATCCAGCATATTGG----AGTtgtgtgcatttgtgtgcttgtgtgtgtgtgtgtgtat--gtgtAATATAAGGGGTATACTGAATGGCAAAATGACTAGTCATACAGAAATCTACAAATGCTGCCCAACTCAGACTCATTCCTCAAGAAGTACTGTGGAAAGCAAATTTAATGATAG-TGCATTTTATTAAAAGGTTGTATTCA---AAAAGTATTTATGTAATGTTAAAATAGCAGAATTAAAACTAATTCTAAAAAATAAGAGTAAATTTTTTTA-ATCAGCTAA-----AAAAGTAGGGTCATTAT-TGACATTACTATAAATGGGGTTACAGATCAACCTGCATGATTTTAAATCATGCGATACTTAAAAATTATTTCAGTTATTTGAATTATTTCAGATTATATACATAAAGTGTGACTTCATTAATATTTAATATCACATTATTTAAAATTTACAAAATTAG s canFam2.chr12 5232896 614 + 75515492 AAAAGAATGTCAGCAATTATGATGTCAAAGGtataaaataaaaattttagtataaaaaatGTAATCATCTGAAAATGCACTAATGTACTCAGGGAGAGTTTTTGGCAATAGGCTGTCAAATAAATGTTATATAAATCTCAAGGAATCGTGAGATGGGAACTCAGGAATTTGGGTAAAGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCATTATTGTACTATAAGGTGTATACTGAATCCCATTATGACCAGTGCCCTAGGAATACACAAATACTGACTTACTCAGACTCCTTCTCAATGAAATACTGAGGAAAACAAATTTAATGGAAGATGCATTTTATTAAGGGACTTGCTTCATTTGTAAGACTTCatataattttaaaat---agaatttatattaattCT-AACAACAAGCACAATCATTTCGATATTAGCTAAAAGTTAAAAGTGAGATCATCACATGACATTACTGTAAACAAAG----ATATCAATCTTCATGATACTAAATTATGTGAT-TTTAAAAATTATTTGAGTTATTTTAATTATTTCTGATTGTGTGCATAAATTGTGACT--ATTAATATTTAATATCATACTATTTAAAA-ATACATAATTAG a score=37343 s hg19.chr6_ssto_hap7 4050026 888 + 4928567 ATTGATATGAGGCAATCAGAAAAATTG-ACACCGACTGtattaaggaaat----agctaatttt-agtgtggtaatagcattgctgttatgtttctaaaaagtcattatactttagattttcataataaaataattatgaatgaa---gtatggtatctgaaagtatcttcagaataacccagtgtgcatgtatgattaattgggtgggtttacaaaattgcccatgaattgatcattgttaaagcttggCTGTTAAAACATGGCACTCTTCTCTCTAACAC-------TGTTGAAGTTTTCTGTAATACAAAG----TTTTTTAAAAAATGCATTCCAGGAAAGTCCCATAAACA--TAGGCAGAGAAACATTCTGTTTGAAGTT-ATGTTAGTTTTT-AGGCTTTTCTCATTTTTATCACAGTTGGGAAATCCTAAGTATCCAAATCCTGCCTAAGACTATAGGAACCTCTCAAAAATGCAACTCTAAAGAATGTGTATGCAAGAACTAATAATAGCAAAGGAAAGCAAAGTACTTTTTCCTTTATTATTGGCTGTACTAAGCCCCCAGACTTGTTTATATATTCCTTAATTC-ATCAAAACTGC------AAAAATGGTCTTTGAGTACCATTATAGCAATAAGTACCATACTTTGTTATACGTATCATTAAAATAATGTGaaaagagatacattcattgtcttcatagaacttacactctagtgggaagaaatatacatatattacataattccacaaacatataattacaaactctgaataatttataaaggaaaagagaacaaggtaaagtgagagagtgttgCACAGGAACCAGGTATAATTTGGGGGAGATTAGAGGTGACTCGAAGAAGTGTATCTTGAGATGAAATAAGATGGTATACAGTAGGTAAGG s canFam2.chr12 5233647 892 + 75515492 attcttgtgaaacaatcacaaaaattgaactctgactctattaagaaatttttaatctaattttgggtgtgataatggca---atgttatgtttccaaaaagtcattaaattttaga-tttcataataacatattcatcgataaaatgatatgatttataagaatatcatcaaactaatcgagtatatgtgtaaaattaagtgggtaggtttacaaaattatccatgaattaataattattaaaggtagactgttgatacttggcactattctctctaccactacatattgttgaaattttccatgataaaaaGGGTTTCTTTTAA-----GTATCCCAGGAAAGACAAAGAAAAAACTAGGTTGAAAAGCATTCTGTTTGAAGTTAACATTCGTTTTTAAGGTTTTCCTCATTTTTTATCCG--TAGGAAGCCATGAGTATCCAAAACTTGCTCCACACCAT--GAACCTCTCAGAAATGTAACCCTAAAGAATACATATGTCACAA-GGATAATATTGAAGGAAAGCAAAGTAATACTCTCTTTATC-TTGACTGGACTAAGCCCCAAACATGGCTAATATATACACTAATTTAATTAATAATGCAAAAATAAaaatggttattgaataccagtgttgtgacacataccatactacattctgagtgt-attaaattgatatgaaaacagatatgttcatcgtcttcacagactttacattctagtaggaagaaaaatgcatatacaaaatagttccacaaatatataataacaaactctgaagaatttataaaggaaa--tgaacaaggtaa--CACATAACCATTGCACAGGAATTAAGC---AGTTGGTGGAGATTAGAGGTGGCTTGAACAAATGTA---TGAGATGAAAT-AGATATTGTATAGTATGTAAAG a score=7951 s hg19.chr6_ssto_hap7 4054355 268 + 4928567 tctatgaaaCTGTCAATGGAAGAAAGAGAAGACGAT--TTTGACCCTCTCGTTAATAAAGAATCTTCCAGCATGTGTGCTCAGTGTGACAATGTTGAACTGTAAGAATGTCCTAGAATATAATCTATCACCCACCCCGATTATAGGGCTTATGCTTCAACTAGAAAAATCAGATCTCGATGT-TCCCCTAAACT--TTGAGTCTTGTTCAATCCCTAGCCCTGCCTCTTCCCTTTGCAGGGTCAAAAGCCAGGAGCTACACACAGAGACTGAG s canFam2.chr12 5249310 265 + 75515492 TCAATGACACTGTCACTAGAAGGAAGGGAAGCAGATGCTCTGACCCTCTTAC--AGAAAGAAACTTTCAGAAAG-GAGC-CAGGGAGCCAATGATGAACTATAAGGAAGCCCTAGAATATGCTCCACCTGTTACCTCTGTGGTAGGGCTCCT-TTTCAACCA-ATAAATCAGATTCCAGAGTCTCCCCCTAGGTGGTTCCCTCTCTTTCCACCACCAGCCCAGCCTCTTTCCTTT-CAGAGTCAGAAGGAAAGAGCTA-ATCTAGAGACAGAG a score=20516 s hg19.chr6_ssto_hap7 4054649 814 + 4928567 CTTCCCCATTTCCCCAAAAGTGTTACTCCCTTTTGATCCCTATGGTGAATGACAGTGCCCACCCTGAGGAAGAGGACAAAATCGGCACAAAACTTTTGACTCCATTCAGCATTCTACTTGGGGAAAATTCAGACCATAACCCTGGGGAGCAGAATCTCAAGTGTTGGTGCC-TCTTTGTGCGCCAGTGTCCCTGTCTGAGGACCTGCATGACAGCCTGGAGTACAGGAGATGAACGTCCCAAGGAGACCTAGTTCTCCACTCTGACCTCATCCATAAGAAGGAAGAGCCTGCCAAAGACTCCTCACGCCCAGTGTGTGGGTGAGGG--AGAAAGGAAGATGGGATGCCTGCTTTCAGGGTCATGGCCTTACATAACCTCGCAGAAGCTCCCAGACTCTGGCTTCATGATGAAACTCAGAGACTGAGATGTAGACC------AGCTTCAGGGCTGGGCCCACATCAAAGGGGCCACAGTGTGTAG--TTACCTCCCTCATAACCGGGAAAAGAGTGTCATCAGGAATCAACAGGTTACAACGTC-TATGACAAAGGGAGCTCAGACA------------------AGGAGTGGAATGACTATGAACAGGTACCCCCAATGAGGGACCCTAGAACCAGAGGGAGCTCTGCCATTTGTCCTGTGGGCTCC-----ACAAGAAACAAACTGCCCCTTACACCCCTCCACTGTGAGGAGGCTGTGGAGGCTGAGGTGCTCCACATGGCTGGTGTAGACATCTGCACACT-GGAAGTCATTTCCAGGACCACAAGGATCTGGAAAATCCAGTCCTCCTTCCTAATAAGAGCGATGGACACAATGCTGGCTGTCAGC s canFam2.chr12 5249892 794 + 75515492 CTCCCTCATTTCCCCCAGAATGCCTTACCTTTCTGGCTCCTGTGACGGATGATAAGGCCAAGCCCAAGGAAGAT--CAGCCCCAGCACGAAGCCACCAATGCCACTCAGCATCTTGCTCTGGGCAGATTCAGACTGTGCCCCTGGGGAGCAGAGACT-GAGAGTCAGAGTTGTCTCCACACCCCCAGGCTCCCTTTGGGAAGCCTGAAGTCCAGTCTGAGGTACAGGAGGTGGAGGTACTGGGTGAACCT-------------GACCACCCCTAGGAGAGGGAAGGACCCACCATTAGATCCTTGCACACAGTGGGTATGTGGGGGGAAGGAGGGAGGCTGAAA--CCTGCTCCTCCAGACA----CATCCATAACCTC----AAACACCAAGGCCCCAGTCACC-------------AGCCAGGGCAGTAAACCCTTCAGAGCTACAGGGCTGCGTT-------GTGGGGCCAAGGTATGGAGAATGATCTCTCTAGTATCTAGAAAGACCACGAGATCAAGATTCTCCTGATGCCCCTGCCGTGGGACAAGAGGTACTCTAATCTCCTGTGATTTCCACCTCAGTAGTGACATCAAGGATAACAAATAG----AATGGGAT------GGGCTAGAGGAAGCTCTGCCCTCTGTCTGTGGGGCTCATCATGACAGGAAACAAACTTCTCCTTACGCCACTGCACTGTGATGGGGCTCTGGAGGCTGGCGTGCTCCACATGGCAAGTGTAGACATCTCCTCGCTGGGGAGTCATCTCCAGCATCACAAGGATCTGGAAGGTCCAGTCCCCATTCCTAATAAGTGGAGTGGACACGACACCAGCTGTCTGC a score=4235 s hg19.chr6_ssto_hap7 4055520 158 + 4928567 tcagaATCTTTCCTAAAGTTGTTAAAACTCTGGTAGACATTCTAGAAACATATATTAACAGAGacagacaaacagacacacacacacacacacacacacacacacaGCAAGAGAGAGAGATGAGATAAGATATGAAGTGATAAGGAAGA---GAAATGCAG s canFam2.chr12 5306981 131 + 75515492 TCAGAATCTTTCCTAAAATTGTTCAAATTTCAGTAGATACTGTAGAAACACACAACAAAAAAGA----------GACACATGCACACAGAAA-------------AGCAA-------AGATAAGGTAAGATGagagacaatgagagagatgcagacagtag a score=3594 s hg19.chr6_ssto_hap7 4055678 117 + 4928567 AAAAATAGATGCAAAAAGAAACACGGAGACAGAAAAAATGCAGATAAACAGTGACAATGG-------ATTAGAAAAATAGAAAGAAAGGCAACAATGTAGTGAAAGACA--------ACAAGGGGGCACGGA s canFam2.chr12 5246862 123 + 75515492 AAAGAGTGATGCAAAAAGAAACA---------AAGAGATCCAAATAAATAATGGCAAAGGTGTAGTTAGTAGagagacaggcagagacgcaatgaaagagtgagagacacaacagagacagagaggcaaaga a score=79407 s hg19.chr6_ssto_hap7 4055795 2040 + 4928567 AAAAAATGCAGAGAGACACGCAGAAAGAACTATACAGGGACAA--AGAGATACAGAGAAAGAGAGGCAGATTCACAGATAGAGATGTAACAGAAA---GAGAGAGGTGAAGATCTCGTTGAGTATCTGGAACTAGTCACTTCTGAAATCAACTTGACTCTAGGCTTCCTTTGCACCATGAACGAAATATATTTG-----GGTTTCTATCATTTAGAATCAAAAATAGTACTTTTATTGCTGGTTATGCTTTCTTAAAAGTAAAAATTATTCTTGATTGATGTGACTTGCCAGAAT--GTTTGAAACACCAGTG--------------ACCAAGGGTCACTAT-ATCTGCCCCCAAACAATTCCACCAT--GCTTACTTATATAGCACTCACCAAACCAGAAGAGAGGCTGGGATATTCTCAGGCCACTGCACTGAGCATCAATATGAAAGAACCATGAATGATGCAACAACTGAGTTGATCTTCTACCTCC-TCTGCCCACCCTG------ACTTTGCACCCC-AAATTCTTTCAGTGTCTTTTCAAGGTACAACCCTCCTTCTGGGCACAGGTTGGCTGGGTCACCTCAAGGTATGTTCCTT-CATTCTGCAGTGATTTCCTGCCTCTGCTCAATTAAGGAAGTTGAGAATACAGATAACTCAGGATCATGTTTAATTATGTAAAAAAGCTCTAAAGTCAGGTAA-TGGTTTTCATGTGCTTCTCTTGAGCAGTCTGAGGAG--AGAATAGAAACAG--AAACCCCTTGGGGCCTCAGTAGACGCAGCTGGCCGTGCACAGGCAGAGGCTCTGGGTAAGTGCAGGAAGCAGGGTCACAGCCATCAGCCTCGAGGTGGGGATGAAAGGAGATGACCTGGTGGCTGCGTGACAGCCACTGTAGGACTCTGATCTCAG--GGGGACAGGCTGACACAGGCAGCTGGGAATTCTGGGCAGGGACAAGCAGGCGTTACAGAAAAGTGATAACCAATCCCAGTTAAAATAGTCTCAGGAGTCAGTGCAGGAGCCCTGAAGAAGAGAGAAGAGGGATGATCAGCACAGGGTACGCTGGTGGGCCTGCAATCTCCCCCACCCCTCAGGGGCCCCCTGCAGCTTCAGACAGAGAAAGCTGAGGTCCAGAATGTATTATTGTCACCTCCCGCAAGATCTGTGCAAAGGTGAAATCAGCTCGTGAGGACACAGAACTTCAGCTTGATGCAGATATGTGGGAAGTGGCGGAACAGCTGTTACTCTTCTGGGGAATATGAAG--GGTTCAATCTTTTTAGAAAATTGGATGATACCTCATCCCT--ACCACTAGCAGCCTCTTTCAGTCACTGGAAAATGCCTACAGGCAGTAGCCACCAACATGTGGCACAAAGTGGGCATCATCCTCTTGTCTAACATTTAAGCTGTGGTTCTGGCTTCACATTTCACAAGAAGATACCACCAAAGTTAAGGCTTGGTTCTGGGGAACAACCTCTGGAGATTCCTAGA--AACTGG-CAAACTTCGACCCTAAGTCTTGATCCTCATAGCAGCAAATATACCATGAACAGAGACCATTGTGGTCAGGTGCATTCAGCTCATGCTCTTCCCTCTTACACCTGTGCCCCC--CCACACTGGCTCATGGCTGAAATATCACCTGCTGGTGGAGGCCCTTGAGGTCTTACAAAAGGAAGTTATGCAGAGAAA----GGTCTCATTACACAAACAGCCAC----TCTTTCACCCCAAAGGAAAATGACACATGTGACTTAATTAGAGTTATATTCTCTTACCACTCATGTTCTTCAAGGCCTTAAGTACCCTAATTTAAAATCCCCTAAAACAAAGAAAATTGTCACTAGAAGGCAAGGAGGCCAAGGCTCTGACCCTCTTAATGGAGGAAGCTTTTGGAAAGGAGCCAATGAG---ATGATGAATGGTAAGTATATCCTGGAATAAGCTCTATCAGTCACCTGTGTGACAGGGCTACCTTTCAACTAGTAAAATCAGATTCCAATGCCTCCTCCAATCTTGTCCTGTCTCCTCCCACCTCCAGCTCAGTTTTCTTCCTCTCAGGGTCAGGAGGAAAGAGCCACATCTAGAGACAGGACC s canFam2.chr12 5247610 1967 + 75515492 aaAATATGTAGAGAGGCACACTGAAATATAT-TAAAGGGACAAGGAGAGACACATAGAAAAATAGG----TGCACACATGGAAATATAATGAAAAAGAGAGAGAGATGAACATCTCATCAAATGTCTGGATCTAGTAACTTCTGAAATCAACTTGACCTCAGACTTCCTT-GTAACATGAACAGAGTACACTTGACTTGGGTATCTATCATGTGAAACCAAAAATAGTACTTATATTACTAGTTATACTTTTTCAAAAATAAAAATGGACCTTGATCAGTG-------CCAAGATCTATTTGAAATGTCACTGTGGTTTTCAGAGACACCGCGGGCCACTATTACCCACGCCAGGATACTTCCACTGTAAGCTTACACGCG-AATACTCCGCAAACCTAAAGAAAGGCCAGCACCTCCTTAGGCCATTGCACTGAACA---ATACTCAATATCCAGAAAGGACGTGACTATTGAATTGATTTTCCATCTCCATCTCCCCCGCCTGCTCTTCATTTGGCACCCCCAGATGCCTCCGGTCTCCCTTCAAGGAGCAA---------------------------------------TATGACCCTTTCATTCTGCACTGGTTTCCTGCCTCCACCCAGTTAAGAAGACTCAGGGTACAGAGAACTCATAATCACATTTAATTATG-ATAAAATCTCTATCTTCAGGTAAATGGCTTCAATGTGCTTCTCTTGCACAATCTGTGAAGGAAGAATGGAAACAGGAAAATCCCTTGGGGCCTGAGTAGATCCTG-TAGCAGGGAACACACAG---------GTCAATGCAGGAAGCAGAATCACACCCAG-ATCCTCAAGA-----------------GTCCTC-----------AGAGTCA-TGTAGGACTCTGATCTATGTGGGGGACAGTCTGTCA--GGCAGCTGGGAATTCTGGGCAGGGACAGACGGACACTACAAAGGATGGA------ATCTCCG-----GTATCCTCAGGCATCAGTGCAGGAGCCCTGTAGAAAAGAGAG------TGATCAGCAGAGGAGACCCTGACAGATGAGCCCTCTCCCCT-CCTCTCAGGG--CCACTGCAGC----ACCAGAGAAAACTGAGGGCCAGGGCAGGCAGTCATCACCTCCCCCAATATTTCTGTAAAGGTGAAACCAACTAAAGAGAACATGGCACTCCAGCTGCACACAGATGTGTGGGAGGCAGTGGAGCAGCTCTTGTCCTTTAAGGGGATATAAAAACGTGTCAATCTTTTTAGTAAACATAATAACTCACCATCTTTGAACCACTAGTGGCCTTT------CACATGTAAATTCACACAGGCAGCAGCCAGCAACACATAACACAAAGTGGGCATCATCCTGGTGTCTAACACCCAAGATGTGGCTCTGGTTCCGAGTTTCACAGACAGATAGCACCAACGTTATGGCTTGATTCCAGGGAACAAC-TCTGGATCTGCCTACACAAACTGGGCAATCTTCCCCCCTAACTCTTGATCTCTGTAGCAGGGAATAGGCCATGAACTGAGACCATTGTGCCCAGGTACACTCACCTCATGCTCTTCCCCCTTTCACCCGTCCCTGCAACCCCACTGAATCAGAGCAGAAATAGTACCTGCCGGTGGAGACCCCCGAGATCCTGCAAAAGGAAGTGATACAGAAAAAAAAAGGTCTCAT-----AAATAGCCACCTTCTCCCTCACCCCAAATGGAGGTGAGATAAGCAACTTAATT-GAATTTTACTTTCTCCCCACTCATCCACTCCAAGACCTTAACTGCCCTAAGCTAAAATCCCCCAAAATCAATGACACTGTCACTAGAAGGAAGGGAAGCAGATGCTCTGACCCTCTTACAGAAAGAAACTTTCAGAAAGGAGCCAGGGAGCCAATGATGAACTATAAGGAAGCCCTAGAATATGCTCCACCTGTTACCTCTGTGGTAGGGCTCCTTTTCAACCAATAAA-TCAGATTCCAGAGTCTCCCCCTAGGTGGTTCCCTCTCTTTCCACCACCAGCCCAGCCTCTTTCCTTTCAGAGTCAGAAGGAAAGAGCTA-ATCTAGAGACAGAGCC a score=66931 s hg19.chr6_ssto_hap7 4057835 1098 + 4928567 TCCCTGAACAGAGGGTCTGGGTCACAGCCCATCTTCCCCTTTTCCCTTGGGGTTCCTCACCTTTCTGACTCCTGTGATGGATAATAAGGCCCAGCCCGAGGAAGATCAGCCCCAGCACGAAGCCTCCAATGCCACTCAGCATCTTGCTCTGGGCAGATTCAGACTGAGCCCCTAAGAAGCAGAGCCTGAGTGTCAGCGTTTGTCCCTACACCCCATAGCATCCCTGCTGAGGAGCTGAAGTCCAGTCTGAGATGCAGGAGGTGAAAGTGTCAAAGGAACCTAGTCCTCCATTCAGACCACCCCTAAGGGAGGGGAAAGCCAGCCAATAGGTCCTTCGGTATAGTGAGTAGGTGAGAG--AGCGGGGAAGCAGATCTCCACTCCTCAGGAACTCATCCATA-CCTTAAACCCTAAGATCCCAGTCACCAGCCCTAATAATAAGTCCCTCCGAGCTATCAGGACTGGGATCTGGAGAAACAGTACGTAGAATAATTTCCCTAGCATCTGGAAAGGTGATGAGATCAGGATTCTTCTGATGCACTTGCCATGGAGCAAGAGGTGCTCTAGTCTCCTGTGATCCCCAGCTCAGTAGTGACATCAGGGATAAGAGATGGGAAGGAATGGGTCAGAAGGAGCTCTGCCCTTTGTCTTGTGGGGCCCATAGTAACAGAAACTCAATATCCCCTTACGCCACTCCACGATGATGGGGTTCTGGAGGCTGGGGTGCTCCACGTGGCAGGTGTAGACGTCTCCACGCTGGGGAGTCATTTCCAGCATCACCAGGATCTGGAAGGTCCAGTCACCGTTCCTAATAAGGGGGGTGGACACAACGCCAGTTGTCTCCTCCTGGTCATTCCGAAACCACCGGACTTTGATCTGGGCTGGATAGAAATCTGTCACTGAGCAGACCAGCAGGTTGTGGTGGTTGAGGGCCTCTGTCCTGGATGGGGAGATGGTCACTGTGGGCTCCACTGAGGGCAGTAACAGACAGGAAAAGACAGGAGTGAGATGTGAGACCACACAGCACGTCT-ACCATTGGGAATGGTCCCTCCTTGGAACCAGAGTGGAAAGATACCTGGAGTCCAAGTCTTGGATTAAGat s canFam2.chr12 5249860 1081 + 75515492 CCCCCGAACAAAAGGTCTCAGGCATAGCCCATCTCCCTCATTTCCCCCAGAATGCCTTACCTTTCTGGCTCCTGTGACGGATGATAAGGCCAAGCCCAAGGAAGATCAGCCCCAGCACGAAGCCACCAATGCCACTCAGCATCTTGCTCTGGGCAGATTCAGACTGTGCCCCTGGGGAGCAGAGACTGAGAGTCAGAGTT-GTCTCCACACCCCCAGGC-TCCCTTTGGGAAGCCTGAAGTCCAGTCTGAGGTACAGGAGGTGGAGGTACTGGGTGAACCT-------------GACCACCCCTAGGAGAGGGAAGGACCCACCATTAGATCCTTGCACACAGTGGGTATGTGGGGGGAAGGAGGGAGGCTGAAACCTGCTCCTCCAGA-CACATCCATAACCTCAAACACCAAGGCCCCAGTCACCAGCCAGGGCAGTAAACCCTTCAGAGCTA-CAGGGCTGCGTTGTGGGGCCAAGGTATGGAGAATGATCTCTCTAGTATCTAGAAAGACCACGAGATCAAGATTCTCCTGATGCCCCTGCCGTGGGACAAGAGGTACTCTAATCTCCTGTGATTTCCACCTCAGTAGTGACATCAAGGATAACAAATAGAATGGGATGGGCTAGAGGAAGCTCTGCCCTCTGTCT-GTGGGGCTCATCATGACAGGAAACAAACTTCTCCTTACGCCACTGCACTGTGATGGGGCTCTGGAGGCTGGCGTGCTCCACATGGCAAGTGTAGACATCTCCTCGCTGGGGAGTCATCTCCAGCATCACAAGGATCTGGAAGGTCCAGTCCCCATTCCTAATAAGTGGAGTGGACACGACACCAGCTGTCTGCTCCTGGTCATTCCGAAACCACCGGACTTTGATCTGGCCTGGATAGAAATCTGTCACTGAGCAGACCAGCAGATTGTGGTGGTTCAGAACCTCTGTCCTGGACGGGGAGATGGTCACTGTCGGTTCCACTGAGGGGAGTAACAGACAAGAAAAGAC---AATGAGATGTGAGACTACACAGCAAGTCTCCCCATGGAGAAAAGTCCTCCCTtggtaccagcatggaaagatccctggattccaagtcttggattcggat a score=134707 s hg19.chr6_ssto_hap7 4060141 3774 + 4928567 Gatatataaagtggtgatgctaatctctaatgcacagg-----caactgtgagattaaatgacgtaacatagacggtatttgataaggtaactgtctagaaataagtgctcactaaatggGTAAAATTGACTTTCAGAA----TGTTTATTCCTGAAGTGGATAGTGATG-------------------GGGGGAGGGGA------GAACCTAAGCCAAAAGCAACCTGAAACTATTTTTATCCAATAATTTAATTGCTTCAATCTATTTATTCCAAAACTTCTGCTCTTTGCATTGTGCCATTTGTTCAGCTTTTCTAAGAAATTAAAA--CTGCCTTACAAACATCATTCAAGTGTTGTTTTTATTTTTAGCAAACACTTTTTTCCTCAGACTTTGTATTCACAAACTCTAT---------TAAGATCCAAGTCAATAAGAGTTTACTTTAAAGAATTAAGCAAAATGACAGAAAATAATTAATAAAAGTCCATTTTTAAGGCTCTATTTATCCTCTGCTTTCCCTTGAGCCTAAGTGGATTGGCAGCTGAGCACATTTattcattaatttaacagaagatcattgagctcataccacatgccagtcaatgtgtcagataccaggcatgcaatgattaaaacac--tctcatctcaaagagctccgccatgaatgagagccatttaagaaaacaGAATTACGATGAATAATAATTTGAAGTCAAAAGTCAAAATATCTTATTTGACAACTGTAATTGCTGGATGCCCTGCGCGC-AGTTGTGGG---GCAGCCCTAACTCCATCAGGCCAAGTCTGAAGCTTCCCACTGCATGAGCTGTGTAGGTGGACCTTGCCGGGTGCGGCAGTGCTAGCCGGGCGGGCGG--GCAGGGGAAGAGGGCGGAAATTGGGGGCAGAGAGAACT--GCTTAGTAAAGGTAAGGCACGAGGAGGCAAACG--CATAAGGCACGAGGCAAGAACGTGCAGAGCAGAGGGCGAGGCCGACGGACGGGGAGGATGGGGCGAAACTAGGCAGCTTGACCAACTCTGCCTGTCCCCCTGCTCTGCCCTAGGTCCCTGCCCCTCCGATGCACCAGCCCCCAGCACCCCCACCGCCTCCTCCTGTCAGCCGGGGTGG-AACGAACAAGGCTCAGGTTCCA-----------------GAGGCCGCGCCCCCTTCGCCCCTCCTGGCGCAGAGACTCTGGGCC----CCTGCCAAGGA---TGGGC------CTCGCAGACGGGCGACGA-----CGCTCACCTCGCCGCTGCAAGGTCGTGCGGAGCTC---CAACTGGTAGTTGTGTCTGCACACCGTGTCCAACTCCGCCCGGGTCCTCTCCAGGACTTCCTTCTGGCTGTTCCAGTACTCGGCGGCAGGCGGCCCCAGCGGCGTCACCGCCCGATACACCCCCACGTCGCTGTCGAAGCGCGCGTACTCCTCTCGGTTATAGATGTATCTGGTCACACCCCGCACGCGCTCGGTCCCGTTGGTGAAGTAGCACATGCCCTTAAACTGGTACACGAAATCCTCTGCGGGGAATCACCGGCCGGTCAGTCAggccccggcccggccccagcccggccgcccccgcagccgccgcccTGACCCGGC-CCGGAGCTGTGGAACCGCCCGCGCGACCTCCAGTTCCCGCCCGCCC--GTGCCTGGCGCTCCAGACTTGTGATCCGCCCGGCGGCTCTGCCCAGCCCTGCCCGCCCT-CTCTGGGGGCTTCGGGAATCCGCCTTCCTGCAGGCAGGAAAGGGCGGAAAGCCCTGT----------------------------CCCTGCCGGAGCCTGTGAACCGAGGGAA--GAGGCAGTCGGGCTGATTTTACATAGACCTCTGCACTTAGA-GGGAATCAGGGCGCTCTCGCATGAAATCCCATTTTCCATTGAGCTCCTGGAAACCTCAGAGATAA--AATTATCCACATAAACCTGTGAGTTCAAGGGAATGATGAGACGGGTCCAGAAATTAAGCCTGTCCTCGTTCTGATATGCGTATTCTCTTGGTCCCTCGGTAAAATACCTCCCTTCCCATGCCTGGATT--------------------TACCCTTCCGAATGCCATGTGAGGTTCACTCACTTTTAT---GTTAGAAAGGACCTACACC-TCCGAGTCCTAGAAAGAAACA-TTTATTCAtggaaagagcacaagcttttgaatttgataaactagattccaattaagctgtggcagtcaccagctagggcagg-tatgtaacagaata-tccatatcacaagtataattgtgtaaaa-gaaaatcatgatatctacacaca-ggatgttagaaggagtgagagagaatttat-gtaaagtatt-gtgctgtgtctgaaatgagtggtttcacaatatatgttatttcCCTTCTTTACATCCTCCTTTCTGCTAAATTCAGTCCAC---CAACTCGGGTCTCTGAATCCCACTCAAGTCACCATTTGCCCATAAATCAGTGAAACCTG-----AAGACTCCCTGTCTGTGGTCATCCAGTCAGCTTCCTTCA-GTACCAAGATTTTGCCTCCACAAACGCTCCAGTCAG---TCAG--GAATACAGACAACTTTTCCTCAAATACGGAGACTACAGACACCATTGCTGCCTTACATTT-CCCAATGCAGGATCCCATAATATTTAGTCCAGGCAAAGTCTTGGGGCACGCCTAAATGACAAATCCTGCTGTG---TCTCTGGAGAAATTCGTATCTTCAAAAATAACCCCATGCTCACTTTGTCCTGTCACTGGTAGTAAATGTACACTTTGTCTCCTCTTTCCTCTCCTCTCTCCTTCTCTTCCAGGCTTAAGCCTGTAGGATGGGGATCCGACTGTGCTCACCTCATCACTAAAAG-ATAAATGGGAATGCAACATCGTTCTCTTTCCCCAAAGAGAGGAAATGTTGATGAAAGATTGTG-TCCGAGATCATGGAGATCACCATCCCCCTACCCCAGCCCAAGG-------AGAGCCTGTT-CCCAGAGTGGCGGCTCTGGAGAGCAGTGGCCCTGCACTTACCGGGAGAGTCTCTGCCCTCAGCCACCGGGGTGCTCAGCATCGCCAGCATCAAGGTCACAGTTGCTACCCGAAGGCCTCCAGGGATCCGCAAAGCCTTCTTCCAAGACATAATTGAG-ACGAAGGGAAAAGTAGTGGTAGTCAACACAGCTTGGACCTGATGGATCTGATGTACCTGGCAGAAAGAATAAAAACCTGTGGATGTTTCCCTGCGTGGCAGGATTGGATGGTCCTTTGGAAAGGAACCAATCAGCACTGGAGCTGAAGGACCTAATCTGTCTCTAGGCAGACATTTTTTTTTGTGAAGGTTCTCAATCCAGTCCCTGGCACTGTGACGTCTTCAAATTGCACTGGATGAACATTTGAGGTGAAAACTTCCTCTCAATTATAGAAGAGCTGAAGATTGAATGCCTAAGGGATTTTAAGAAGCCAAAGAAAAATGCGATTCAACAGTAAACATCTTTGTAATATT---GATTAAAAACTGGTTGTTTTTATACTTGGGATTCTTTCAGTAGGGCAAATTAAGTGGGGATCATATTTCAGGGGAGAGAAAATTGCTGTCATAGACATTTTTACTGCTGTTGTCTTAGACACACCCTGAGGAGCCTTAAGTTTTGGTGAGAAGAGCAAAGTTCTTAGAAGGAAATAATGGTGAGTTGCAGTTCCACCACTAATGTGCTTTAGGAGAGTCAACAAATAACTGAATTTATTTTTGCCCCAGGATTCTCTTtgtaaaatatgggtcatgtttcatgcattttacagctagatcttcacatatacaaatttaagattaatatgacttgtttaatattacaaaaggctcctcaactgttatgtgt----------aactatcagattaatatgtggaacaagaa s canFam2.chr12 5251164 3696 + 75515492 GACAGATAAAGTGGC--TGCTAATCCCTAACATGCAAGGTGGTTAGTTGTGAAATTAAATGGCGCAATATAGACGGTGGGTGGTAAGGTACTTTTCTAGAA-TAGGTATGTATGAAATGGCTACAATTAACTTCCAGAAAGGGTGTCTACCCCTGAAGTGGATTGCGATGCCCTGAGGACGTGACCCAGGGGGAACAGGATATGCAGGGCTTAGGCCAAAGGAAACCTGAGACAAATCTTATTCAATAACTTAGTAGCATCGATTGATTGACTCCAAAACTTCAGCTCCTTTTATACTGGCATGTGTTGAGAATTTCTAAGAAATTAAAATTCTGCCTCACAC-CGCCTTTCACAAATAGTTTATATTTTTAGTTAACACTTTCTTC-------TTTGCATTCACAAATCCTAGGCTATTAAGTAAGATTCAAGTCACTAAG--TTTACTTTAAAGCATTAAACAAAGCAGAAAAGAATAAT-AATAGG-GTCCATTTTTAAGTCT-TATTTACTCTGCTATTTTTCTTGAGCCTAAGTGGATGTGCAGCTGAGTGCACTTACTCATTAATTTCAC-GAAGGT--TTGCACTCACACGGCTTGCCAGTCCCTGTGTCACACACTAGGCAGGCAAGGAT-AAGGCAGGGCCTCGCCTCAGAAATGTCCAGGCCCAGTGACAGCCATTAGGGAAAACAGAATTAAGATGAATAATAATTTGAA--CCAGAGTCAAAATTCGGCGTGTGACGACT-----------CTGCCTTGCTTACCAGGTGTGTGCATGCAGCTC--ACT-----------------GAGCTTCCCAC---------------------------------CTGCAGCCCCAG--GGACAGGTCACTGCAGGAGCCCGGGGCGGGGCTGGGGTGCTCAGGGGGCTCGGCTTAGGAAAGGTGGGGAGGGAGCAAGCAAGGGGTCTCAGGGCGCGACATGGGGGTGCGTGGAGT---------------------GGGGGCATGAG------------------------------------------------------------CCTCGGAAGCGCTGCTCCCCCCTCCCCGAACGGACCCCCCATCTCTGCTGAGAAGGCAGAGGGCCGGGCTCAGTCCCCCAGCTCTGGCCCCTCGCTGGGGACGCGCCCT----GCCTCCCTGTGCGCA-----CCTGGGCCGGGTCCCGCGAGGGGACCTGGGTGGGGAGCCCGCGG--GGGCGAGGAGGGTGCGCTCACCTCGCCGCTGCAA---CGTGTAGAGCTCTTCCACCCCGTAGTTGTGTCTGCACACCGTGTCCACCGTTGCCCGCTCCTGCTCCAAGATCTCCTTCTGCCCGTTCCAGTACTCAGCCGAGGGCCGCCCGAGCTCCGTGACCGCCCGGAACTCCCCCACGTCGCTGTCGAAGCGCACGAACTCCTCCCGGTTATAGATGTATTTAGCCAGAAACCGCACCCGCTCCGTCCCGTTGGTGAAATAGCACTCGGCCTTACACTGGTACACGAAATCCTCTGCGGGGAG--ACAGCCGGGCCAGTGAGGCCTCCACC--------GCTCAGCCCAAGCAGCGGCCACCGCCCTGGCAGGCCTCTGGGGCAGCGCCAGGGCCCGAGAAACCTGAAGGCCTC-CCGGCTCTGATGCCCGTCAACCCGGCCCCGAG---CACCC----TCTCT-CCCAGGCCTGCCCGCCCTCCTCGGAGAGCTTCCAGAG-CTGCCTTCATCCAGGGAAGGGAGGGAGGAAAGCCCCTCTGGAAGGGCAAGCCCTGGCACCCCTGAACCCGGCCTGAGCCTGACAACTGAGCTAAACAGGGCAGTCGGGTGGATTCTACA------TCCCGACTTGGACTGGGATCAGGACGTGCCCACAAGATACCCCATTTTCTTGTGGACTCCAGG-AACCTCAGAGGCAAATAAGTGTCCCCATTAGCACAAG------AGGGAATGTGCAGAAAGGTCCAG-AATTGAGCTCAACTTCCTCCTGACAAGCATATTCTACCGG-CCCCCAGCAAAAGGCCTTTCTTCTAAGGCCTGGGTTAACTCTGAGTTTCTGTCGCCCACCCACCCCCCTGCAGTGTGAGGTTTGCTCACTCCTGCAGGGCTAGAAGGAACCCACACCTTCCAAGTCCTAGAAAGAAACATTTTATTCACAGAAAGA--ACAGGCTTTTCAAAAAGATAAAATAGATTCCAATTAACCTGTGCCAATGACCAGCTTGAGTAGGTTACTAAACAGAGTATTTCCTATCATAAGTATAATT-TGTAAAACGGAAGTCATAAAACCTACACATAGGGGTGTTAGGAAGA-TCCAAGAGAACTTATAGTAAGATCCTAACCCTATCGCTGAAA----CGGTTCCTCAGTATGTGCTATTTCCCTTCTTTACTTTCTCCTTCCTCCTACATTCAGTCCACCATCATCTCAAGTCTCCGAATGCCACACAAGTTACTCTCTGACCATAAACTAGTGAGACTTGAAGTTAAGACTCCCTGTCTGTGGCCACCCAGTCAGCGTCACTCATACACCAAGAGTTCATGCCCATGTGCACTCCACTCAGAATCCAGTAGAACATAGAGTCCTTTGTACCAAAGACTAAGATGACAGAGACCGTTGCTGCCCTACATTTCCCCAACATACAATCCCACAGTGCATAGCCTAGACAAAGTCTTGGGGGACCCAGAAATAAAAAATCCTACTGTGTCTTCTTTGGACAAATTGTTACTTTCAAAAATAACTCCAATGTCACTTTGTCCTGTCAGTGGTTGCAGATGCACACTTTGTTTCCTCTACCC--------------CATTAGGAGGATTGAGCCCACAGGATGGGGA------TGTCCTCATCTCATCCTTAGAGGTGGACATGAGAATGTCACAGAGCTCTC-TTCCCCAAAGAGAGGAAACTGTGATAAAAGTCTATATTCTGAGATCATAGA----ACCTTCCAC--ACTCCCACCAAAAGGTCCTTCAGAGCCTGTTCCCCAGAGCAGTGGCCCTGGGGAGCAGGTGTCCTGCACTTACGTGGAGAGTCTCTGCCCTCAGCCACTGGGATGCTCAGCACCACCAGGATCATCATCACAGCTGCTGTCCAGAAGCCTCGGGGGATGCACAGAGTCATCTTCCCAGACATAACTGAGAACAAAGGAAAAAGT--TGGTAGTCAACACAGCTCCTACCTGGTGGCTCTGAAGTACTCACTTCAAAGAATAAAAATCTGTAAAAGCTTCCATCCATAGTAGGATTGGAGAGTTCCTAGGGAGGGAACCAATCAGCACCGGAGCTGAAGTACCTCACCTGTCTCCGGGCAGACA---TTCGTTATGAAGGTTCTCAGTCCAGTGCCTGGCGCTGTGTCTTCATCAGATTACACTAGATGAACACTTGAGGTGACGATTTTCTC----CTATAGAAGACCTAAAGATTGAATGCCTTAGGGG-TTTAAGAAACTGAACAAAAA-ATGACTCGAGAGTAGACATCTTTGTGCAATTTTGGATTA------TTTAGTTCTTATACCTTTGGT--TTTTAGT------AAATAAGT-GGGATCCTATTTCAGGGAAGAGAAAATTATTGTCACAGAGTTGTTCACTTCTATTGTCTTAG--ACACTCTGAGGAGCCTTCAGTCACGCtgggaagagcatagttcttaggaggaaatggttttgaattgcaattttaccactaataggctttatgagag----caaattactgagcctctttttgcctcaggcttctcttggtaaaatgtggatcacgttgcctgcattgtatatccaggtcattatatatacgaacttaagagtaataggacttgtttaatattgcaaagtgttcctcagctgccacatgttaactgttgggaataccaggttaatatgcggagcaagag a score=17011 s hg19.chr6_ssto_hap7 4063915 521 + 4928567 aacaagccaaaaaaa-attgatacccacctctgctggtaaatgattcttcattatgcaagaatatattgtatttatgctcttcgagtaaaagtatttgaaaagtttattaagttgacatttctgttttaagttcttcagctgtttaaatcgtccctgaaccatgaaatgggtgcatctgatatcagcaaaggcacagtacacaaacctttacagtattcagacacagtcatgtttagttttgaagagagagagcaaaagctgtagagaagcatttcctaggtcctgaatagtattaatgatggagaaaatgtt-tagtcacagattg-----------------tactgtgccagccctaaa-tatcaaatcccaaatggcagaggtatcaatgtggtttttTTTCCATTTTTAAAAATTTATTTAACAGTTCCTTATGGACATATCCACATCAATGTGCTTTTATAAATAAACGAAATCAGGTTCCTCTTGCCAGTGACTAGGGGCAGTACT-AATGGTTATAAAGCAATTAGAACAATGC s canFam2.chr12 5255052 440 + 75515492 aacaaggaaaaaaagtggtgacacccagccctgtgggcaagtgattcttcattatgcaaggatcttttacatttgtgct-tttgactgaaagtatttgaaaag----tcgagttcacttttatg-------------------------------------------caggttcctctgatatcagcaaagatgcaatccatgaacattcccagcattcacacaaaatcacctttcatttcaaggacagagagcaaaagatgtggagaagcattttctgggtcctgaatgatgttaatgaaggagcagatgttagagtcacacactgtgtatagatgtggcacttactgtgccagcccaaagttatcaaacctcgaatggcagaagtatcgatatgtttttatagcaaatct--atTATTTATTT----------------------------------------------------ATCAGGCTCCTCTTGCCCATGACTAGCGTCAGTGCTAAATGGTTATAGAGCAATTAGAACAACGT a score=36486 s hg19.chr6_ssto_hap7 4065442 1152 + 4928567 CTGGCAAACATTACTTCTGACCTCAACCAAGACAATAAATAtctccacctctcttcttctctccctttctctctttctctTCCCGAAATTTTAGGTTCTGCTTTTAAAGTAGAGAATACAATCTAAAATCAGAATATA---AGTTTACCAGGTAAAAAGAAGCAGGCAAGAGGCAACAGCAAGAGGTTTGCAATAGTGGCACATGAAAGCGTTGAGCCACTCCAATATTCTGTATTATTCAATGCATAATTCTAGAGCACCTGAGACTGGGAAAGTTGCCACTGGGCATCCAACAGCAGTGGTGTACTCAGGGTCAGGGTAAACCCAGTCTAAGGAGGGTCTCCACTGCTGTGATGGACGCATAAAGGAGGAAC--CATACGCACACCTGGAATGGAGTT--GGCACAAGGAATAATA--GGCAGAGAGACCTGAAGGTGCCCTCAATGTCCTTCCTCAGCCCCCACATCAGTGTCCCTCAG----GATAGAGGCCTCTAATGCATCCTATCCTTCCTGTTTAAGGGAAAAATTTCCCGCAGGTTTATTCTGA--------GGCAAAGGCTGCATCAGACCTGGGGATTCCCCAGTCTCACAGGCCTCTTTGCACAGACTTTTCAGCTAGCAAC--AATTGTCACTTCAGAGC-CTTTTTCTGATTGGCTAAAACCTCACTGGAAAGGTTTTGCTTTGGGCTTCTGCCAGCTGTGTCTGCCTGACCCAGCC-------------TTCTCTACAGTTGTCTACCCTGGCCCTATCCCTGCTGCATTATTCAGGGCATTCAGGCAGAAGAAGGCCAGCGAAGAAAGAAACTAGGTCAAGCAT---------CCTTATTCCGAGTGTCTCA-CCTGAATCGCCTGCCCAGCCTCTGTGGAGGC--AGAACAATTAAAGCATTTACTCCATATGGGTAAATG----GGCTAAAAAGTCACTGCCATTAGTAGGGAGGGTCAGGGTTACAGTAGGGAGACTGTCTTTAGGGGACATCCTCTCTTCCTTCAGGCTGGAAGA-AAAAGTCGTGGACTCCTTCTTTGTGAAAATCAAGGGAGAAATCATCTTCTCTGGTCAACATCTCTTGGAATCTGTGCTTGGTCAGTGGAGTGAA-TGTGAACATAGG------AGCCATCCTGTCACCAGAAGGACCATCCAAGACCTTACCCTGCATTTACTTCAGGAATCAAGAA s canFam2.chr12 5255492 1153 + 75515492 GTGGCAAATATTAAT---------AAACAAAACAATAAGTATCTCCCTCCCTTTTCT------CCCTCCTCCCGTCTTTTTCCTGTA--TTTAGGTTTT-CATTCATAAGAGAGGCCATTATCTGAAAGCCGAATAGAAGGAGTTTACCAGGTAAAAAGAAGTACAGCAAAGACA----CAAGAAGTTTCCACTAGTGGCACATGAAAGCAATGAGTCATTCCAATATTTTAGATTA---GGTGGGTGGTTCCA-ATCTCCTGAGACT-------TAGTCTCTGGGCTTTCACTAGCAGCGGTGTACTTAGGATCAGGGTAATGCTGGAATAAGGAGGGTTTCTA-TGGTGGCATAGAAGCAGAAAGAAGGAGCATCAAAATCAGAACTGGAATAGGGTTGAGGGGCAAGGAAGAATGGTGGAAAGGGGACCTGGAAGGTACATTA--GTCCCTC--CAACCCTCACCTCAG-GTCCCTCAGAATAAATAGAGAACTCTCTCTCCTCTTGTCC--------TAAGGGGAAA--TTCTCTCCACTCTATTGTGGTGCTGTGTGGTAGAGGCCATGTCAGACCTGGGGATTGCCCAGTCTCACAGGCATCTTCACCCAAGCTTTTCAACAAGCAACAAAAGTGTCAGCTTAGAATGCTTTTTCTGATTGGCTAAAACCTCATTTGAAATGCTCTGGCTCAGGCTTCTGTCAGCTGCTTCCCCCTGAGCCAGTCAACATTCTCTACATTCTCTAGAGCTCTCTGTGCTACTCATAG-CTTACCCCATTACCCAGGGTAGCCATTGCCCAACTGCCCTGAGAGGAAGGCAACTCAGACA--CATGATTCAGGGCCTTATCTGAGGTACCCCACCCTGGGTACCACATCAGGTGGATGTGGGCACTTAGGATGAAGGCAGTGTGTATCCCATGTGGTTAGAAGATGAGATCAAGAAAT-------AGTCATGAAACAGGTCAAGGTTCCAGTAAAGAGACTCTCCCTAGGGGACATCCTCTGTTCCCTCAGGATGGAAGATAAAAGGTATGGACTCTTTCTTTGTGGACCATCAGAGAGAAATCATCGTCCCTGATCAGCATCTCTTGGAATCTATGCTTTGTCAGTGGAGTTAATTGTGAACATAATAATAACAATCACCTTGTGACCAGAAGGGCCATCTGGGATCCTA-GATACATTTAATTCAGGAATTAAAAA a score=13184 s hg19.chr6_ssto_hap7 4066595 295 + 4928567 CACTGTATATTCTGAAAGGTTCTGTGGCCTCCTTAATGCCAATGGTAATATAACTAGAAATGCTGCTCCCAGAATATTGTTT-TCTTTTAATTAAAatttatcaagcaattatccctaaatttttcaaaatctttgtgaagccac---ttacat-atttcttttatatcaacttctaggttaccagttatat---------ataacaatttttcgtggcacatataaactaggtcctttctcttggcacaaagttatctctttaaaatctcaGTCTAGAGAATCTGAAGAAAGCACCAAATCAGTAGCA s canFam2.chr12 5256833 305 + 75515492 TAATGTATATTCTGAAATATTCTGTGACTTCCTTAATGCCAGTAGTAATATAATTAGAAATACTGC-CCCACAATATTATTTCCCTTTTAATAAAAATTTATCTAGCAATTATCCCTAAGTTTTTCCAAATCTTTGTAAAGGTACTCTTTACATCAACCCTTACATCCCAGAATATGGGATGTCCCTTACATCAACCCAAAATATGAATTTTCCATCACACATATGCAGTAGACCCCTGTTCTTAGCAT--AGTTATCTCTTTAAAATCACATCCTAG-TAATCTGGTCAAGGAATGAAATCAGTAGCA a score=19121 s hg19.chr6_ssto_hap7 4080002 409 + 4928567 tatgtcacatttattaaAGAGAAAATTGAAGACATGATACAGAAGAGTAATAGGAACATGTTTGTCCATATAGTTGCCATTCAACTACATTAATTGATTTTTGTAATGTGCCATTTGGGGCAAAAACAATAACATTGTAGAATCTTTCCAAGAGATTCACTT---TCTATCTTCAAAGACCAACAATTCCACCCAAGtgaattactgcaaaagcatcctgactggtctccttgcctctactttacaatgtagacattgctcataaatccaagttaatctctctgagtgttagttccttcaactgcaaaatgag---aatatctattccatggagtaatgctggggattaaatgaaatggcaaatataaagcaccaaaaatagtgttgaacacatagtaGat----aataataataattt s canFam2.chr4 76992918 405 - 91483860 TAAATCACTTTTATTAAAAGAAAAGTATAAGATATGATCCAAAAGACTCCTGTGAACATGTTTGCATATTCAGTTGCAATTTAACTGAATTAATTGATTTTTGTAATGTGCTATTTGGAGCAAAAATATAAACACTGTAGAATCTTTCCAAGAGACTTACTTCTCTCCATTCCTACAGACCAACAATGTTTCTCAACTAGAGTTTTGCTAGTG----CTAACTAGATTCCTCACCCCTACTTTACATCATAGACATTGCTTATGAATCCAGGttaatttctctg-------gttatctcaagtgcaaaatgagggtagtatcttttctacaggataatggtgagaaacaa---aaatgacatacataaagcatctaaaacagtgttgaacacatagtggatgctcagtaaGAAGAATTT a score=4192 s hg19.chr6_ssto_hap7 4082570 104 + 4928567 CTAGGTGGTTGTTCTGGT------TTGGTGATAGAGACTACAATCCCAGAAGGGTTTATGCTCTTGTTTATGTTCTCCTTGATGGAGTATAATTGTTTTAGTGTCTACtg s canFam2.chr12 70190225 110 - 75515492 CTAGATTGCTTTTCCAGTAATCTTTTGGTTATAGCAAATATTATTTCAGGAGTCTCTATGCTCTTATATATTCCACCTTTGTTGGATCATGATTGTTTTAGTGTCTATTG a score=4628 s hg19.chr6_ssto_hap7 4083365 86 + 4928567 CCTAGAGGGCAGTGTCTTCCAGCCAGCACCATTCAATTATTCTTTTGGACTGATTACATCTAGGTAAT-GGGTATATATCATTATCC s canFam2.chr12 70190701 87 - 75515492 CTTAGAGGGCAGTGTCCTTCAGCCAACAATATTCAATCATAATCCTGGACTGGCTTCATCTTGCTGATGGGGTATATATCATGAGCC a score=19858 s hg19.chr6_ssto_hap7 4083886 536 + 4928567 ATCTTTTAGTACTTTTATGCATGGTAATGACTATCAGTAGACACTAAAACAATCA--ATCCAGCAAGGACAGGGTAAATAACAGCATAGACCTTTCTGGAATAGTTGTCTCTGTCACTCAAACA------GAAAAACAAACTATACTAAATTCAGAAGATGAGGGGAA--TCAGGAGCGGCTTGTGACAGAGGGA---GATGAATATTAGTTACAGTCATAATGACAAC----ATAGTGGACACTGTTGCAAATTTCACT-----------------AACCGTCTTGCCTTAATCTTCT---AGATCACAATTGGCCACTCTTCCTGACCTCCCTATTTGAAGAAAAATTAAAGTATGTTAATTTTCACAGGAAAAAAAATGAGAGGCACCATATTAGAGTATGGCagcttggatccctgaatcaccagcttgagaagagctactcacaaatcatcagtatcttcctactgttacattagtgagttataaaattctactgtatttcagccttcctacactttcaagtctagtta--------ttgtagcagtctggcctattctaattaacataAAAAGAA s canFam2.chr12 5325124 555 + 75515492 ATCTTTTATTA-TTTTATGCATGGCAATAACTATCAATAGACACTAAAACAATCATGATCCAACAAAGGTGGAATATATAAGAGCATAGAGACTCCTGAAATAATATTTGCTATAACCAAAAGATTACTGGAAAAGCAATCTAGACCAAATTTAGAGGGTGTGGGGAGACTTGACAATGACTTATGAAGGAGAAAGATGATGAATATTAGTTACAATCACAAGGCCAGCTACAACAGTGGACACTA--GCAAATTCCATTGCAATATAAAGCATTGCAACCATCATGCTTTAGTCTTCTAGGAGATCACACTTGATCAACTTCTTGAACCTC-----TTGCGGAAAAATTTAGGAA---AAAATTTCACAGAAA--------------ACTATACTGAAGTTGagaagcctgggtccctgaattagcacctggaggagagttacccactagtcatcaacacctg-ctcttgttacactagtgagatatgaacttctactgtatttgagccattatacatctttgggtctatacatctttgggttacagcagtttggcctttcctaactaatataTGAAGAA a score=35339 s hg19.chr6_ssto_hap7 4084427 854 + 4928567 AATAATTGTAGGAAAAATCAAACAGAGAATATAACAATTTTAATGGTTTCTCCTGAGCTAGACTTACTTGAAATGGTCCTCATTTTTT--GTTTTAGTATTACCA-GAGATGTAAGACAGAATCTCACAAAAATATTCAAGCTGGTGGATGAGGCCAAATTAGGCAACTAGGTTGTGTGTCTGGAATTCAAACCATATTAAGTACTCCCTGCCCGCCTTTC-TCCTATCCTTTAGAGCAGA---------------------------------------------------GCCTGATTCTCAC--ATATTGTCCCATAAGTCTATATCAATCAAATCAATTTTTATTATCCTGAAAGCACCT-ATGGAAATACTGCCTTTTTTGAAGTTA------AATATGAGCACTCTGCTCCATGCTGTTTTACTGATATT----TAGAACTGTACAAACTTATATTCTTTACATTTGTGGGAAATTATTATATTGTAGATGAGCCTAAAATAGTCTGTGAATCAAAACTTACTATAACAAGTTGTAAAGAACAGCTTTAGTCAAAAGTGTGTACATGAAACTAGCAACCCAAACACTCAAAGCAAGAAGAATAATAACTAAGTGACCACAAAGGAAATTTTTTTAATCACATGCCTGGCTCTTGCAGGTGGAGAAGGTTGTCTTGCCCAAAGGAAGTGGTTACTAGACCAGAGTGTAACCAAATACGGGATGCTGCTTTaaaaaaaaaaaaaaaaaaaaaaaaGATTCACAGAAGTTGTGCTTGAGTTAAACCACTAAGTACTTTCCTCGCCAGCCAATGAG---AAGAAGTGAAGCAGCATCATTTGTCTCTGGCAGACTAAGCCAGTAAGTCTGTTACAGAAAAAAAAAATCACTTAAAAGagcaataaacatagaaaatatcaaag s canFam2.chr12 5259292 879 + 75515492 AAAAATGATGGGGAAAATTTAAATTAGAATATAACCCTTTTAGTGGTTTCTAATGGACCAGTCTCACGTGAAATGATCCTCATTTTTTTTGCCTTAGAATTATCATAAGCTGTAAGACAGGATCTTGTGAAAACATTCAAGCTGATG-ATGATGCTAAATTAG-CAGCTAGGGTATGTGTCTCAACTTTAGACCATATTAAT--CCTCCTGTCCACCCTTCACCCCATTCTTCAAAGCAGGTTCCTTTTTCCCTGGCCTCTGTTTCTTTCTTGTTCTAAATCCAGAACATGGGCTTTCCTTTCACTGACATACTACCTTAATTTTATATTGATCACATCAATTGTGATTATTTTGAAAGCATCTTATAAAAAGACTACCTTGTTGGATGTCATGTTCAATTCTGGGTACTCTGTCCTATGCC-TTGTATTGATATTACTTCAAAATTATATATACCTATATTCTTCATACTTGTGGCAAATTATTATGTTGTAGATCAGCCTAAAAATGT-TGCAAATCAAAACTTACTATAAGAAGTTGGGAAGAAAGGCTTCAGTTGGAAGTGAATACATAAAACTAGCAGCCTGGACACTTAGCACAAGAGGAACAAAGACTGCGTGAC------------TTTTTTTATCGCAAGCCTGGCTCATAGAGGGGGGGAGGGTTGCATTGGCTGAAGGAAGTGGTTACTAGAACAAGGCATAACCAAAGATGGAATGTTGCTTAAAAAAACA-------------------TCACTGAGGCTGTGTTTGAGTTAAATCATTAAATACTCT-----CCAGACAATGGGCCAGTGATGTGAGATAGCATCACTTGTCTCTGGCAGACCAAGCCACTAAGTCTGTTAGAG---AAAAAAATTACTTATAAGAGCAAAAAACATACAAAAC-TCAAAG a score=5355 s hg19.chr6_ssto_hap7 4086354 89 + 4928567 AAGAGAATTTTAAATCATTTTCCTTGGTATTAGAAACACAATTCTAATTCAATGTTTTTCAAGAGATTGCAATAATGGTTTGGAGTGTT s canFam2.chr7 76068147 89 - 83999179 AAAAGAATTTTAAATCATTTTTCTTGGTGTTAGAAATATAATACAAATTTCATATTTCTTAAGAGAATGCAAAAAAAGTTTAAAATGTT a score=10738 s hg19.chr6_ssto_hap7 4087221 276 + 4928567 catagcAACTATAAATATAGGTGCATCTAATAAAATATCCTCAAAGACATGAATCAAAATTGATATAATATTTAGGTAGAAAGCAAAAAATCTA-CCATT----TATGGTATATTTTAATATATGTTTCTAGGTTCTTTATAAGTCAAGAAGGCAAAAGTaggatataaaagatctaaataacacaattagtaagcttaacctaatagacTCAAATATATG----ATAAAGTTATTGTCTATGTTCTCATCTATGTGCCAGGTGGTAGATTCACCAGTGCCTATT s canFam2.chr12 70178762 266 - 75515492 catagcaactataagcatatgtgcatctaaTACAATAGCCTCCAAGATAAGAATAAAAA---ATACAACATACAGGTAGAAGATGACAAACCAAACCATTGTACTAGGATAT---TTAATATATGGCTCATAATTCCTCATA------GAGAATTGAGATAGGATATA---GATTTAAATAACACAAT----AAGAATGGCCTAATGGACTTAGATATATTTATTATAAAGTTATTGTCAAGGTTCTCATACATGTGCTGGGTGTTGGATTCACCACAGCTTATT a score=12175 s hg19.chr6_ssto_hap7 4087876 286 + 4928567 taatGTAATAGGCACTGGTGAATCTACCACCTAGCACATAGATGAGAACATAGACAATAACTTTATAATA----TATTCAAgtctattaggtcaagcttactaattgtgttgtttagatcttttatatcctacttttgccttcttgacttataaagaacccagaaacatatattaaaatatcatactataaatggtagatttattgctttctacctaaatattatatcaattttgattcatgtctttgaggatattttattagatgcacctatatttatagttgctatgt s canFam2.chr12 5336458 273 + 75515492 TAACATAATAAGCTGTGGTGAATCCAACACCCAGCACATGTATGAGAACCTTGACAATAACTTTATAATAAATATATCTAAGTCCATTAGGCCATTCTTA----TTGTGTTATTTAAATCT---ATATCCTATCTCAATTCTCT------ATGAGGAATTATGAGCCATATATTAAA-TATCCTAGTACAATGGTTTGGTTTGTCATCTTCTACCTGTATGTTGTAT---TTTTTATTCTTATCTTGGAGGCTATTGTAttagatgcacatatgcttatagttgctatgt a score=2303 s hg19.chr6_ssto_hap7 4088467 63 + 4928567 tttgttttccttgactaggtgaatgtttatcattatatcagtctttctgtcctacgatatctt s canFam2.chr12 5336731 57 + 75515492 ttt-----tcttgatacagtgaatgtttatcatcccatgagtccttctttcctacaatg-ctt a score=27481 s hg19.chr6_ssto_hap7 4088530 737 + 4928567 tttccttaaaatttgttttt-gacattaataaataaacacc--atttcttagaattagtttttgcataatatgtcctttctatgttttacacttaatctctgaaatgacttttatgctttaggtatgtgtcttgtaaacagtataacctgaatttatgattttgcattcaatttgtcagtctctgtcttctggtcacaagtttagtctatttgcagttactaaaattaatgagatgtgtggac--tttatatTA--TAATATTTTTCACTTTAATCTTTCCCATGATTTTACTGACTTTTTTATCCTGTTGTCACATGTCTAGAACCCATTCTAAC--GTGTATCAGGCCTGGGTATGCTGCCTGGAAGGTGGATGTATTTTGCCTCCTACTTTGGGATGTGTTTTCAGTCTCTGTTAAGGTTTTGGTTGCTCATTTCTGGCATCCC-CTTCACACAGGAAATAC----CCAGATTCAGCCATTTGCAGATTTTGAAACATTGTTCTGGTTCTCTGCATATGGCCTGTCCCTGGGCTCAACTCAACACCCCATGTCCTCGCTCAGACTATATAACTCTAGACCCAGCCTGTTAATATGGACTGCCTGCCTGCTTGTATTTT--TTCAGAGAAACCTCTAAAAGA--AATTATCAATTTCTTCAAAACATTAACTTGA---------------------------TAGGTTCTTTTTAAGTCAAGTAATCTATTGGAAATTATATGGGTGCTCTAAACTATATCCCCTGGATAATCTAACCTG s canFam2.chr12 5336898 769 + 75515492 tttccttaaaatttattttttgactgtaatatatccataaccgattttatttacttagtacttgcataatagatgtttttcattttttgcactcaatctctgaaatagcctttatgtttttaatcatagtctcataaataatatcacccaaatttatgtttttgtgatcaatctgtcaatctct----tttaatcacaggtttagtccatttgcacttactgaaattaatgagatatccagaccttttataccaCCTCATGTTTCTCA-TTTCATTTTCTGCATGATTTTAATGGCTTGTTTTCACTATTCACTCATGTCTGGAATCCATGCTAGCATGTGTAGCAAGTCCCAGGCTACTGTCTGGGGGGTGGTTCTTTTTTGGTCTCTGCCCTGAGACATGTTTTCAGAATCTGTTTAAGTTTACATCGCTCATTTCTAGCTTTTTGCTTCATGTAGGAATTATTATTCTATACCCAGCCTTTTACAGATATTAAGATTCTGTCCTGCTTTCAT---TATAGCTTGTCTCTGGGCCCTAA-----ACCCCTTGTTTGCATGAAGACTGCATGTCCTTAGATACCACATATTAATAGAGATTCTCTGATTGCTTTTATTTTCTTTTAAGAAAACTTCTAAAAAAGCAATTATCAATGTCCTTGAAACATTAACTTGAAAAAAAAAAAAAGAAACATTAACTTGATGTGTTGTTTTCAAATTAAGTAATCTACTGAAAACTATATGGGCTTTCCAAAATATACCTCCCTGATAATCCTGTTTG a score=6306 s hg19.chr6_ssto_hap7 4089468 164 + 4928567 AGAAAAGTGAACTAGGTAACAAATGAGAAGACTTACATACGCTTAGTTCTTGCAGGAGGAAAGGAACTATCTGGGTATGGAAAAGGTTACTAGGCAAGATTGTGATTGAAGAGAAAGGATAATGATAAAGGGGCTTTGCAGAAGCTCTGGTTAGAAGAAATAAC s canFam2.chr12 5337667 141 + 75515492 AGGAAAGTAAACTAGGTTATGGGAGAGGA------------CTTAGCTCTTGCAGGAGGAAAGGAACTGTCTGACATTGGAAAAAGTTGAAAGACAAAATTTGTGGTGAAAAGAAAGGATGATGGTAAATAGCCTTTGCAGAAGCTC-----------ATTAAt a score=7496 s hg19.chr6_ssto_hap7 4089632 173 + 4928567 TAATAGTAATGAATATGTATCTCTCCAACCAATGAGAAGCATATGATGAGGCAGAGTCACTTGTCTCTGGCAGTCCAAGCTACTAAGAAGCACAAATAAAATATATAGTAGCAGGGGGAGATGGGAAGGGTGAGAGAATGTAGGATAAATTACCATTCAAACTGCCGGTAGAA s canFam2.chr12 5338275 167 + 75515492 TTAATACCACGAATACATTTTTCTCCAACCAGTGAAGAGCATAAGGGGAGGCAGCATCACTTGTCTCTGTCAGTCCAAGCTACTAATAACCACAAAT-AATTATAAAGTAGCAGTAG-----AGGGAGGCAGAGAGAAGGTGGAGTGAATTTCCATTCAAATTAGGAACAGAg a score=5215 s hg19.chr6_ssto_hap7 4089805 132 + 4928567 ATATAAAATTTTAAGGAACAAATTCCACAAAAAAATACAGTG--------TTTTAATTACAAAAATTTACCATGCAGCATAAAGACATAAATGATTTAAGAAACATGACATGTTCAGAGATGGGAGTGTAATTTTGGGCT s canFam2.chr12 5338645 140 + 75515492 ATATAACATTGCAAGGCATTAATTTGACAAAGaaatataaaaattaaaatttttaattacaaaaatttaCCCAGAAGCCTAAAACCAAGAGTAATTGAAGACATATACCATATACACAAATGGGAATATGGTGTTGGATT a score=7666 s hg19.chr6_ssto_hap7 4089937 312 + 4928567 TGTATTTTCAAACAAAATTCATATGACAATGAGAATTCAAACAGT---TTAGATtattaaaattaaatttaatgaagttggtagctatattctggttatgtacaagaatgtatccttttcttaggaaatacacactgaagtacttaaggataaagagttctgatgagtgcaatttcagaaaaa-------aaaatatataagtacaaaATACTATTCTTATTGCAAATTTTCTTTAAGCTTACTTTTTTTTTTTTTTTTTGAGCAGAATAGTTGCCCAGGTGCAGTGGCTGACttatttatttattttttatttttttaata s canFam2.chr12 5341129 271 + 75515492 TGTATTTTCAAACGAAACCCATATGAGAATGAGAATACAAACAGTAGATTGGATAA--AGTACTAAATTTAGTGAAATTGATAGCTATACTCTGG-TACATATAAAAAAG--TCATTTTTTAAGGAAATAAACAGTGCAGTGTTTAAAGGTAAAGGGCCAT-ATGTATACATTTTCAAAAAAATATTGTGtatatatatatatatatatatatatatataCAGTACATATTTACTATTCTTATTCTTTCAGTTTT---------------------------------------------TCTGTTTTACATTTTTACAATA a score=3225 s hg19.chr6_ssto_hap7 4090479 73 + 4928567 AAAATGAAAAAATCTACATGAGGCTATAAAAATATTACCTCTATAAAATAAAAACAAAATGGAATGTAAAAAG s canFam2.chr12 5341604 70 + 75515492 AAACAGAAAAAAATTGCA--AGGTTAT-AAAATATTACCCCTGTAAAATAAAAATAAAATTCTATGAAAAGAG a score=-248 s hg19.chr6_ssto_hap7 4090552 2 + 4928567 AG s canFam2.chr12 5342300 2 + 75515492 tc a score=3511 s hg19.chr6_ssto_hap7 4090554 165 + 4928567 ACTGGACATACCATAATGCGAAGATTCTCCCTTTTTGTGTACTCATATATCCAAAAAGGAAACTTTCCATTTTGTAGTTG-GGAAGTAGAACCAAGATGTAG-GAGTAGGAGG----------------GGAGTTGAGAACCAACAATTCAGTAAAAATGCT---------TTCAGTCAATTCCCATCTGTA s canFam2.chr12 5260411 189 + 75515492 ACTGACAATATCATAATATGGAATTTCTCTCTTGAGGTG-ACTCATAT--CCAAAAAGCAAATTTCTGGTGTCTCAGTTGTGGGGGCAGAGCAAGTGTATGGTAAATAAATGGCTGCCCATGTTCCATTGTAGGGGAAGGCCAGGGGTTCAATAAAGATGCTAATGGTACTTTCAATTAATTCCCACCAGTG a score=14583 s hg19.chr6_ssto_hap7 4091027 330 + 4928567 TCAAAATTTAAATAATTAGGTAA-CAAACTATGACACAATTATATACA--GTCCTTCAAAACAATGTTTTAGAAAGATATTTAATGACAAAATAGAGTTGTTTACCATATGTTAAATTTAAAAGGAGTTACAAATTAGCACATTCACTGTGATCTAAAACCTCTAAATCTGTTTATGTTTTTATTTATATCTACATTTAT-ACCTTTGAAGCCCTCCCAATATCAACTGTCACCCAAGGTTCTAAAATACAATAAAAGTGATCTTGTTTTCTTCTGTTCTTGGTTATAATTCTAAGACAGTCTGACAAGTCTATTGTGATTGACTTTAAAAATA s canFam2.chr12 5260601 316 + 75515492 ACACAATTTAAAGGACTAAATAAATGAATCATAGCACGATTATAtatatagactttcaaaacaatgttttagaaggacatttagtgaca-----gaattgtttatcatatgttaaatttaaaagtagttacaaattagcctattcaatatgatcttaGGCCTCTAAAC------ATGTTTCTATTTATATCTCTATTTATTATCTTCAAAGCCTAGAAGGAAAAAAATGTCACTCAAGGACCTAGAATACAGTAAAGATAATCTCATTTTCTCTTCTCCT-------GCTTCAAATATTGACTGACAAATCTATTCTGGTTGGCTTTAAAAACA a score=6228 s hg19.chr6_ssto_hap7 4091357 174 + 4928567 CAGGTGTTAAATGAAATCTGTATGTGGAACTATTGGTCTCAATGATATATGCAACTCTGGAAGTTGGGTACTCAGCTTTATCTAATCTCTCCCTTTGCTCACCTCCACCAGGCTTGCAATGCCCTCTACAGTCCAGGCAACAGGTACACGGTTTTCAATCCCATTTGAACTGCT s canFam2.chr12 5261167 167 + 75515492 CAAAAGTTAAATGAGATCTGCATGTGGAGCTATTAGTTAAAATAATAGGCTGAA-TCTTAAAGTTAAGTAAACAACTAT------TCTGTACCTTTGTTCATCTCCACCAAGCTTGTGGTACCACGTATCATCAGGGCAACACAACTACAGCTCTCAGTTTTATTTGACCTGCT a score=24148 s hg19.chr6_ssto_hap7 4100081 653 + 4928567 TGGAGGAAAGGAATGGTGTGAAGGGCTCTTGTTTTCATTAAAATACATCTCTATTGTTTAATCTTCAAACTATATACTGATATCCCGATAAATTTAAAATAGTAATTGTAAAGTAAAATATCATTCTTACTGAAATATCAAGAATGC-------------TGCAGATGGTGGCAGAATGTtcaatgtgaaaaaggataatggcttgcactagaatgacagcagtgaagtttgtTTT----AAGCATGTCATTTTATAGTGGCAATCTCTTACCTGTGAGAGCAT-----GTAAAAGACTGAGCTCCTCAGTTCTCAAACAAAAGCAGACTTTAACTCTTGTTCCAGC-CATGCTTCTTTGCTTCTCAAACATCCAAAACCGCATCTCAGATTGCATCATATTCTGAACACATGGAAGGACGAGTACGGGAAATAAGAG-TGGCTGTGTTACCACCCTC----AAGGAATCC--TGACCTCTCAAATCCAGACCTGCCAAGGAGCAAGGAAAAAAGGGAAAGCGGCAGGCTCCCTTGAATTTC-TAAAGTGCAATGTCCCCACCTACTGGTGAACATGACCCAGTTAACATCCCTACAGCTGTCCATGTCCTCCTAAAAT-------AAGAACCTTGAACTTCTTCCAGTAGTAGAATCCGTGTCCTTTAGCACAGTTCTACACCAA---------AAGAT s canFam2.chr12 5350246 670 + 75515492 TGAAGAAAAAGGGAGACAAGAAGGGCTCCTGTTTT-ATTAAAATACATTGCTATTGTTTAATTTTAAAA---TGTACT---CTTCTGataatttttaaatataaatt-taaaataaaaGATCACTCTTTATAAAGCATCAGGAATGAATGCATTAGATTACGCAGAAGATAAT-GAAAGCTCAATGTGAAAAAGAATAGCATCTTGCCCTGGA-----------GAGGTTTCTTTTTTTAAAGCATGCAATTTTATGGTAGTGATCTCTTACCTGTTAGAACGTAACGTGTAAAAGACTGAGCTCCTCAGTCTTCAGGCAAAAGCAAGCTTTAAGTTCCGCTCCATTTCATGCTTCCTTGTTTCTCAAATATCCAAAACCACATCTCAGGTTGCATCATATTTTGGAAACATAGAAGGAATGATCAGGGAAATAAGTGCTGGCTAGGCAGCCACCCTCTTGGAAAGAATGCATGGGCTTTCCGGGTCCAAATCTATGCAGCTGAGAGG-GAGAAGGGAAAGCCACAGCTTGCCTTGGATTTCTTAAAGTGCAGAGTCTCCACCTGCTGGTATATGTGACCCAAATAATATACTTCTGGCTATC---ACTCTTCTAGGATGGTTTAGAGGGATCTTGAATTTC------CAGTACAATCAATATGCTTCAGCATCTTTTTACATCAAAAGAAAAACAAGAg a score=32013 s hg19.chr6_ssto_hap7 4100734 838 + 4928567 AAACAAAATATTAATC-CAAAATTTTTACAATGCAA----------TGAATGTGTGGGAATGATAATTTTAAAACATGCCGCACGAGGTTAGTTTTAAAATAACGCCATCGTTAGCATTCCCTTTCCCTAGTATCTATCTACTCCTGACAGCTTCTGCTCAGATTGTCTTCTCTCCAT----TGTCTCTTCCATCTCCCTGT-ACAAACCTCCTCTCTTACACTGCTTTTCCTGCCCACACCCTGCTTCCCCACGTGTTAAGTTGGCAT--CCTTTTTTCCCTCTcattgttttctggcttctgatatttcagataagaaatctgattccagtctggttcttgtccttttatgtgtaaac----------------tgtttatttccttcttggaagccattagatca--tttttattaccaTTTTATT--------TTCTGATTGTGTAGT-AAAAATTTTCACCCCTACAGCTACAGAACTATTTGTATATTTTCATGATTCC-ACTTGATTCCTTTAAATTGCATGAATCTTACCTAGCCAGAGACTAAAGTCTTCCTTTCCTTCAGAAAAAAAAAATCTTTGATTTTTTATTGTATC-----CTATATTCTT-TCTATTTTTCTGGCACACCTATTATACAGCAGTTGGAGATGGCTGTATAGAACTTTCTCAACATATTTTCACAATTTTATGTGTTCCAAGGTAGTTAAAA--CAGGAATCTGATTTC-TTTTGTACTTTCTTTCCCACCCTCCTATTTTTTTTAAGACTCAGAACCACTACTTGAACACTCTAATTGATAACTGCTTAGTTATTTCTCACCTGCCTTAAAGAGTGTTTCTTCATTATGCTCAAGAATGAGAGCAATTTAAAATGATATCATTTTAA s canFam2.chr12 5351081 819 + 75515492 AAACAAGATATAAACCTCAACATTTTTGAAATGTTATTTAGTTCTCTGAGGGTATGGCAATGAGAGTTTCAAATCATGCCACAGAAGGCAAATTTTAAAGTAACACCCTTAATAGCAATCCCTTTCCCCAATATCCAT----TCCTCTTAGCTTCTGCTCAGATTTTCTTCTCTCTCCTTTGTGTCTCTTCCATCTCCCTATCCCAAACCAGCTCTCTTACACTGCCTTTTCTG-CAGCACCCAGCTTCCT--------------GCATAACCTCCTTTTCTCTTAATTGCTTTCTGCCTTCTGATATTTCAGGTAAGAAATTTGCTTCCTGCCTGGTTCCTCTTCTTTTATGTATAAACTATCTGTTAGTTAGCTTATTTATTTCTTTTCTAAAAGCTATGAGATCAATCTTTAATCATCATTGTTTTTCTTTCACTTCTGATCTTGTAATCAAACAATTTCATCTCTACA--TATGTAAC----TGTGTATTTTCATTATTCCTGCTTGATGCCTTTAAGTTGCACGAATCTTACCCATTCAAGA------------CTTTACCTCAGGAAAA----------GGTTTTCTATTATTTCTTTAATTATATTCTCGTCTAT-----------ATCTATTACACAGCGATTGGAGGTTGTTGTACTGAACTTCCTTAACATATTTTCTCAATTTTGTGTGACTCAAGGTAGCTGGGACTCAGGGGTCCAGTTTTGTCTTGTTCTCTCTCTCCCACCCATCTATAT---------CTTATGACCATTACCTGAGCAGTC-------TAACTACTTAGTCCTTTTGCATCTGCCTTAAAGAATGCTCCCTCATTAACTTCAAGACTGAAAGCAGTTTAAAATGAGACCATTTGAA a score=23412 s hg19.chr6_ssto_hap7 4101644 552 + 4928567 tttctttgcatgtcttgtaaatt-----------ttgtttaatattgatattttagataatgtaatgtattaa---------------ctgaatgctgattccccaatccctaggagtaagtgctcttgctgtttgttg----tttgtgttagtgacttgcttgggctagttcttccaagtctgtttccccctagtatgcagcctatggtgtctctgctaagTTTGTTTAATAATTTTTGTTTTCATTATTGAGCCTGATTTCCTACAATCACCCCTGG-TCATCAtagcttaatgtcagcgtatgattgatgaaagattctgcttaaacacattgagtcagtaaggcttccacactttgccattgaag-tgagtgggacttgggaaatgctttcaaagttccgggactttacaggtatgccccagtttttactttctgccttcacatgtccttatattcagccagG------------------------------TCTCTCCTGAGCAGGCTTAACCAAGCTGATTCAGACAGCTTTCCACACCACTGgggataaatgagattttagcaaggctatttttgactatctcattctctggatctccctgttaaa s canFam2.chr12 5360433 603 + 75515492 tttccttgtattccttgcattttgtatttttttgttgttgaaaatcaaaattttagataatatgctgtattaatacagaatattaattctgcattctgattccccaccctccaggagtgagcgttcttgctatttgtttattttctgttttagtgacatgcttgggctaattctgt--agtctatttccccacaatgtacagactatcatctccctgctcagtttcttttataattcttgtttttatttttatgcccaccttactaggatcacttttgggtcattataacttaataggaaca-acagtttatcagaggttctgcttaaataccttcagccagtaaggcatatacactttggtattggatctgagtgtgacttggggaatgttttcaaagttcaaggagtttacaaatatgtcctagtttttactttctgcattcccaaggcctcatattcagtcagggttgagttagcttcctaggacactatctggttcctccttagcatgcataacctagcttatgtg--cagactttcagatcatcaggcataagtgggattttagcaagattctctttggctatctT------TGGAACCCCCTGTAAAA a score=17323 s hg19.chr6_ssto_hap7 4102196 536 + 4928567 attcctgactggcctgccatcaTG------ACTTCAA-----------GCTAGTTGAGATGTTAGCCTTCCATAATTATTTGCCCC-GAGGTCTATGCTGTT-TTCTACAAAACGCCAAGACATTATTTTGAGGTtgtgtgtgtgtgtgcgcatgcacgtgtgtgcacgtgcatgtgtgtgAGCTCTTTTCCAAACAATGTGTGTGAGCTCCCTCTGGCAGGTTAGGAAGAGCTGTCTAATCCCATGGCCTGTCCTcccacacaggtagaaattctgcaccataagttggggt--gaaggaagt--tggtgaaagcatactctggccaaaataatactgattttgctgtttttattaggattcagtttagattctcttaactaaatgcttctcaatgttcgtatcctttggtcaatttccagagtctttaaatgattgtttttggcaactttgtccaatgttatcactgcttttTAGATTCGTT----------GAAATGTTTTGA-TGTCAATATATGTGGTATATTTTTATGTATTTTCTACATGAATTTGAAAATAATCTGTATATA s canFam2.chr12 5361248 499 + 75515492 ATTTCTGACTGCTCTGCCATTTTATTGCTTGTTCCAACCAGTATTGTGACTAGTTGATATGTTCATCTTCCCTAATTATTTGCTCCTAAGGTCTTGGCTGTTATTCTACAACATCCCAAGACATTGATTT----TTCTTCATG----------------------------------------CTCTTTCCCAAATAATGTC----AGCTCCCTCCAGtgaagcag-aggagttgccacattccatggcctagc-tgcctccctagtagaaattctgcaccatcaattggagttgggaggaggtgctgtttaaagaagcctctagctaaaatactacagactt--ctactgttgttaggattcagtttaaattcccttg-ttaagtgtttcccaatttttgt--cctttggtaaatttccagagtct----------------gataactttgttcagttttatcattgttttttaaatttatttaaagttattgaagtgttttcagtgtcaatatatgtgatatattttggtgtgttttccatgtgaaattggaaacaatgtgtaAATA a score=38009 s hg19.chr6_ssto_hap7 4102732 1141 + 4928567 GCGTTTggtacatacacacttaggattatatgtctttttgatgtattgactctttttcattatgaaaaat------ttatctccagtaatattccttatttgtaaagttttctttgtctgatattaatgtagccactccagctttct---------tgcccagtgtatattttttcatccttatatttttaacctgtgtcttcatacttaaaatgcatttcttatggacagtgtatggtcaaa----------------agtcttgcttatttatccagtttagaaat------------------------------atgcatttaatgtaattactgaagta-ctggatttaagtctaccaccttgctgc---tttttgtttttggcccatctgttcttttccttttattcctctttacttgcctttcttAGTATATT---TTTCTCCCTCCTAATGGTAACTGAGTAGAGAGATGTCAGAACTTAGGTCTTTAAGATTTGTGGAACTTTAAAACAAtttttattttattttatttgaggcagagtcttactctgttgcccaaactggagtgcagtggtgcACTATTTGTAGAACTTGAGTGGAAAATCCTAAATAAGA---ATACCACAGA---GGAAAGCCCAAAATTCTGCatttgaaagaaatttgcatgcagaataggtgcccctctttgagttttcatcttttttggggatttttctcctcaatagcaactaattcttttggcaccaaactccaacctccgtcttctcttcctggtaagactgcatctttctgcttgagctttgttctaccatctactgctttacactgaaaagcactctcaggggaaactcacagtaaacgttgaactcacctag-------ttactttccttttctgaatatttatctcttgatgtattctgcatgcttcaaaagatctccaatgattgcaaat---ttttaag--tcatttttatag----atttcataatttttgtttctagaaaggctagATGTAGACATATGGCTTTTAATATAAGTAAGTAGCTATAGAAATAAATGTATAGATGTTTATGTGTAtgtccacaaataggatcttagatttttgacattcccatagcaatgagcacacttaacacacagatcttgatctagcttttta---accagactcttctaaaagaaaccagagc----------tatgacagattctagagcttgagaaaaaaaa s canFam2.chr12 5361987 1113 + 75515492 GTTGTTggtctatatacactt-gaattatatgtctttt-gatgtattggctcttt--cattacgaagtatctctctttatctctggtaatatcc-----ttataaagttttctttgactaatattaatgtaaccattccattttcttattagtagatgcgca----atatttttccatcctt-tacttttagtctgt--ctttatacttaaaatcccttttttgtgggcaacatatatttaaatgttcttcttgtgagaagccttgctttttaatccaatatagcaatctctgcctcttgattagagtacttgatgatatttgtttgatgtaattaatgatatggttggatttcagtctaccactgtgctgcatgttttattttttcccatttctactctttttcttttattcttttttgtctgcctttgttgacatattcattttatCTCTTTTAATAGCAGTTGAATAGAAA--TGTCAGAGCTTGAGTCTTTAACATTTGTGAAACTT----------------------------------------------------------------------------------------AACTGGAAAATCCCAGAAAGGAGAAATACAACAAATTCAACAAGTTCAAA-TTCTGC-TTTGAAAGGAATGTGGCT-------------TCCTCTTTGAGTCTTCGTCCATTTTGA--AATTCTCTTCTGAGTTTCAATCAACT-TTTCAGCACCAAACTCTGACCTATGTCTTCTCATTCTGATAAGACTGTATGTTTTTGTTTAAGCTATATTCCCCCAGCTTCTCTTTCAAACCAAGAAGCATCCTCCAGGGAAGATCTGAGTAAATGTTGAGCTCACCTAACTTTATCTTATGTCCCTTTGCTGAAAAATTATCTCCTCATTTATTCCACCTACATTGAATGATCTTCAGTTCTTTCAAGTAGCTTTTAAGAATCATTCTTTTAGTTAGACTTTATAATTTTTATATGTAAAACAGCTAGATGTAGATGTATGGTTTTCAATATAAGTAGGTAACTGTTAAAATAAGAgtagatatatttctgtgtatgtctacaaatagagtctgagatttttgacatctcaatagcaatgagtacacctaacacagaaatatt------gctttctagataccattctc-tccaaaatgaaccagagttccttggaaatataactgattctagtgctgaggaaaggaaa a score=38318 s hg19.chr6_ssto_hap7 4106071 800 + 4928567 GAGAAGGCAGGTGGTGAGAATTGTTGATCCAATAATAACATGAAGTCCATGAAAGCCTGTGGCTATAAAGAATGTTGAGCCATAGATTCCATCAGAGATAATAAAGGGGGCCTCGAAATATTCTGAA-CTTGTAGAAGGGTGAAATAGACTCCTAAGAGGATCATGGTAAGTACTGCTTGAATTATTTGTTTTTGGTTACCTTCTATTAGACTGTGATGGGCTCAAGTAATTGAAACTCGTGATGCAAGTAATACAGACGTATTTAGGAGAGATACTTCTAAAGGGTTCAGGGGAAGAATACCTGTTGGGGGTCAATGTCCTCCTAATTCTTGGGTCGGTGCTAAACTGGAGTGATAGAATGCCCAGGAAAAAACCAGCGAAGAAGAATACTTCTGAGGTAATAAATAGAAGCATCCCGTATCGGAGGTCTTTTAGGACAATTGTTGTGTGGTGGCCTTGGAATATACTTTCTCGGGCAATATCACGTCATCACTGATGTATAGTCAGTGTGTTGGTTAGTAGGCCTAAAGTTAAAAGAGTGGTAGAATTAAAGTGAAATCATATGGCCAGGCCAGATGTTATTAGGAGAGCCGAGAGAGCTCCTGTTAGTGGTCAAGGGCTAGGTACAGCTATATGGTAGGCATGAGTTTGGCGGGTCATTATGTATTATCATGCAAATAAAGACTTACTAATAGTGTGAAGACATAAGCTTGAATAAGAGCGACAGCGAACTCGAGAATAGTTAGTAGAATTAGAATAATAAGAGATACTGAAGTTGCAGAGACACTAATAATTGATAA s canFam2.chrM 7424 799 - 16727 GAGGAAGCACACGATGAGGAATGTAGAGCCAATAATTACGTGTAATCCGTGAAATCCAGTGGCTATAAAAAAGGTAGATCCGTATACCCCATCGGAGATTGTAAAAGATGTCTCATAGTATTCGGAGGCCTGTAATAGCGTAAAATATACGCCTAAGGAGATTGTAATGAATAAGGCTTGAAGTATATGTTTGCGATTACCTTCTATTAAACTATGATGGGCTCAAGTAATAGATACTCCGGAGGCTAGGAGGACTGAGGTGTTGAGTAGAGGCACTTCTAATGGGTTAAGAGGAATAATGCCGGTAGGAGGTCAGCAACCCCCAAGTTCAGGAGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAG-AAGAAGCCTGCAAAGAAAAATACTTCTGATACGATAAAAAGAACTATTCCGTATCGTAGTCCTTTTTGTACAATAGGGGTATGATGTCCTTGGAATGTGCCTTCTCGGATCACATCTCGTCATCACTGGCATATGGTTAACAGGTTGGTTGTGAATCCTAATGTAAGTAGGGCTATTGAGTTATAGTGAAATCATATGATAAGACCCGATGTTATAAGGAGGGCAGAAAGGGCCCCTGTCAGCGGTCATGGGCTTGGGTTGACTATGTGGTAAGCGTGAGTTTGGTGGGTCATTAGGTGTTGTCATGTAAGTATAGACTCACTAGTAAGGTAAAAACATAGGCTTGAATTAAGGCAACAGCAAATTCTAGGATCGTAAGTAGGATTAGAATAATAAAAGTGATAAAAGCTGTGGTCGCGCTAAT-ATTGATAA a score=29992 s hg19.chr6_ssto_hap7 4130119 1192 + 4928567 GCCTCGGTCGCAGCACCAGTCTCTCCATCTTCTTCAAAGGTGCCTTACCTTTCTTATTCCAAAAATGGCTGGGCCACAAGGCCCAAACCAAGAGAGATCAGCCCCAGCACAAGACCCCGAAGGCCACTCAGCATCTTCCTCTGGGCAGATTCAGACAGTGTCCCTGGGAAGTGAAAGCCTGTGTGTCAGAGCCTGTCCCCACACCCCACAGTGTCCTCATCTGGAAGCCTGGAGACCTATC-----CAGGATGTAAGAG-ACAGAGGTAGTCTGTCACCAAGCAAAGGAGATGACAGG---CAGGCAAAGACCCCAAGGGGCAGCATGGATGGATGAGGAGGAGGGGAAAAAGGAGACGACAACTCCTCAAGGATATGTCCTTCTATAACCCCACAGACCA-TCTCCAAGACATCAGCCCTAAGGTCAAAACCTAGAACTATAACACCTCAGAAGGCGCACCGACAAGGCTGACCTATAGTCTGGGAGTCAGGTGATGCAAAGGGGCCACCATAATAACCTGGGAGAAAAGGAGTTCAGTTCTCAGCAAGTGCATTTTGACTTGAGACAATGGGATCTC-AGTCTTCCATGACTACTAGTCCAGAAATTATATGGGGATACTGTTGTGTAGGAGAGAAGATATGAAAATGTATAACAAGCAGAGGTTAGTAGTGATCTCACCCCGACAAGACCCAGACCCCCCGCCACCCTTCCTTTTTTCCATTGAATCTATGATA----TAAATAAAGTGCTCCTTACGTCATTCTACCGTGATGGGGCTCTGGAGGCTGGGGTGCTCCAGATGGTAGGTGTAGACATCTCCATGCTCGGGTATTATTTCTAGCATTACAAGAATCTGGTAGGTCTAATCCCTATTCTGAATAGGT---GTGGATACAACTCCAGCAGTCTGCTCCTGTTTTTTCTGGAACCATCTGAGTTTCACTTGGCAAGGAAAGAAATTTGTCACCAAACAGACCAGCAAATTGTGATGGCT---GACCTCTGTCTTAGCTGGGGAGATGGTCACTGCAGGCTCCACTAGGAGGAATGACA-ACAGGAAAAGAAACTTAGAGGGTAAGGCAGCAAAGAAATCCTCATCATGGGCTTACATCCTTCCTTTGATACTAAAGTGGAGAAGATAGCAGATATTAATTAGTCTTCTACTCCAA-TCCCAGATCTAGGTTTTAA-TTAGCTAACTTGTTAGCCTAC s canFam2.chr12 5310158 1092 + 75515492 GTCTCAGGCATAGCCC--ATCTCCCTCATTTCCCCAGAA-TGCCTTACCTTTCTGGCTCCTGTGACGGATG----ATAAGGCCAAGCCCAAGGAAGATCAGCCCCAGCACGAAGCCACCAATGCCACTCAGCATCTTGCTCTGGGCAGATTCAGACTGTGGCCCTGGGGAGC-AGAGCCTGAGAGTCAGAGT-TGTCCCCACACCCCACAG-GCTCCCTTTGGGAAGCCTGAAGTCCAGTCAGGTACAGGACGTGGAAGTACTGGGTGAACCTG--ACCACCCCTAGGAGAGGGAAGGACCCACCATTAGATCCTTGCACACAGTGGGTATGTGGGGGGAAGGAGGGAGGCTGAAACCTGCTCCTCC----AGACACATCC----ATAACCTCAAACACCAAGGTCCCAGTCACCAGCC---AGGGCAGTA-----------AACCCTTCAGAG-------CTACAGGGCTGCGTTGT------GGGGCCAAGGTATGGAGAATGATCTCTCTAGTATCTAGAAAGACCACGAGATCAAGATTCTCCTGATGC-CCCTGCCGTGGGACAAGAGGTACTCTAATCTCCTGTGATTTCCACCTCAGTAGTGACATCAAGG---------------------------------ATAACAAATAGAA-------------------TGGGATGGGCTAGAG-----GAAGCTCTGCCCTCTGTCTGTGGGGCTCATCATGACAGGAAACAAACTTCTCCTTACGCCACTGCACTGTGATGGGGCTCTGGAGGCTGGCGTGCTCCACATGGCAAGTGTAGACATCTCCTCGCTGGGGAGTCATCTCCAGCATCACAAGGATCTGGAAGGTCCAGTCCCCATTCCTAATAAGTGGAGTGGACACGACACCAGCTGTCTGCTCCTGGTCATTCCGAAACCACCGGACTTTGATCTGGCCTGGATAGAAATCTGTCACTGAGCAGACCAGCAGATTGTGGTGGTTCAGAACCTCTGTCCTGGACGGGGAGATGGTCACTGTCGGTTCCACTGAGGGGAGTAACAGACAAGAAAAGACAATGAGA-TGTGAGACTACACAGCAAGTCTCCCCATGGAGAAAAGTCC-TCCCTtggtaccagcatgga-aagat----------------ccctggattccaagtcttggatttggatctcagcttggccaccttattagtttgc a score=11079 s hg19.chr6_ssto_hap7 4131642 196 + 4928567 TTTTGACTTTtctatttctcctttcatttctatcggcttttgtctcatgtatttcgaagctctgtttttaggtgcatacacacttaagattgttttgtgtctttggagaaataacccctt-atcattaaataatatccctctttatccctggtaatattccttgttctgacatctactttgtctaga--tgacataatt s canFam2.chr12 5280859 194 + 75515492 ttttggattttct--ttctctttt---ttctatcagcttttgtctcatatattttgaaactgtgtcattaagtatatacacacttagaattgttatgtctttgtggagaaataacccctttatcattaagggatatctcccttaatccctcataatattccttgttctgatatctactttttctagtattcacataatt a score=13049 s hg19.chr6_ssto_hap7 4134015 360 + 4928567 catggtatacagtttcattcattttacttttaatgtaagtatgactttatatttaaaatgggtttcttgtagatggattatagttcaattgtgccatttttactgtctgatcttctttatcacttaattggtgtgtctaggccaattataccta-tgaaattatcaacatggttggattacttttgctagatattttttgttaattctattaaacatttgttcattttcaaaattgtttttctgccttcttttggattagttTTTGCCCTAGGATTT--TACATATATGTATAATATACTTTCAAAT---------ATACCTTAGCTCAGTATGCTCCAAATTTCTCTCTCTCTCATTCATTGTGCAATTGT s canFam2.chr12 5281080 360 + 75515492 catggtatacctttc---tccatttacttttactgtggctatg--tttatatttaagatgggttatttataaacagatgatagtttgatcgtgccatttttattcattcccataacctatcattgaat--atatgtttatacgaagaacatttaatacaattattaaaatgattggattatttttgctaaatattttctattaattatattagatatgtgctcacttttta---ttctttcctgcttacttttgggttATCAGTTGCCCTACAATTTACTGCATATAAATATAGTCTATGTTCAAATTCTAATGCAAGAACTTAA-TCAGTGTACTCTAAATTTCCCTCTCCCACTTTT-TTGTGCAACTAT a score=4211 s hg19.chr6_ssto_hap7 4134379 75 + 4928567 ATATATTATACTTTTTTATATTCCATAAACACAAAATATATTGCTACTAATTTTGCTGTAGACCCTCTGTTACCT s canFam2.chr12 5281679 75 + 75515492 ATATACTTTACTTTTTCAAATCCCATAAAGACACAATGCATTGCTACTATTTTTGCTTTACAGAGTCTGTTACCT a score=12248 s hg19.chr6_ssto_hap7 4134462 428 + 4928567 ACCTTGCAAAGACAATT---CTGTTTGTTATTTAATATCATCCCCACCAATTCTTTGTCAGTAACAACTCCTATATCAATGAATTAGTTGCTTTAAACAACTCTCTTAAATAAACTACACAATAACAAAAAAATAGTACGGGGAAAATACTGCTGCCTAATAGTCTTCTGTGGGAAAACACGCAAAATTACTCCCATGTGCAGATCTGCTTTCACCATAGCCCCAGGTTGCTCTTCAGCTAAACAGAATAGGTTATTTGATAAAGACTTTGTGCAGAGACTATAGTATGTAATCAATAAATACTTGTTGAGTTGAACTGAAATTCTTAATTCATCTGAATCAGGTTGTAGAACTGACTACTGGGAAACAGATAATATTCCTCACGCCTAATAGCAATTGATTCTTTTCCTAGGAACTCTCCAATCCTAATG s canFam2.chr12 70296440 353 - 75515492 ACATTGCAAAGATAATTTTTCTGTTTTTCATTTAATATCACTGCCACCTATCCTTTGCCACCAACAACTCCTGTATGTATGAACTAATTACTTT------CTCTCTT----------------------------------------TACT-----------------TGCTGAAAAACCTGAAACATTGCTTCCAAGGGCAGA---GATTTCACTATTGCTCAAGGGAACTCTTCAGTTCAGCTGAATAGGTCATTTGATGAGGCCTGTGTGCTAGGGCTAGGGTCTATAATCCACAAGTGCCTTTTGAATGGAA-----GCTCTTAATTCAGG------AGGCTAGA-AACTGATTGCCTAGAGACAGATGACGTTCTTCAGGTCCAGCGGTGATTGGTTCTCTTTCCAAGAACTCTCCTATTGTAATA a score=965 s hg19.chr6_ssto_hap7 4134890 29 + 4928567 TACATATTGTGAACATTCTTTGAATAGAT s canFam2.chr12 70297439 29 - 75515492 CATTTATCATGAGCATTCATTATACAGAA a score=12056 s hg19.chr6_ssto_hap7 4135419 366 + 4928567 ACAGTTATTTTTACTTAGCATTAGTGATTTTAAAATGACAAATAATTTTAAATGGAAACTTTAAAAGCAAGTGTTTATATGAAATTATTCATATGTATTTACCAAAGGTCATCATGTATATGTAAAGCATTTTACCTAGAAA-TTTTAAGTTGTGATTTTGCCAGAACATTAAAAACAGAAATAATAACACAAGAATAATTCAAATGTTTTAATAACTGACAACTTTAGGGAAAAATGAATCCAGATATGTGTGATGTTTGGGGATTTTGAAAAATACCTCAAACAAAAGaaatattttataaa---ttatttaCAATGATACAAGTTGAGTAAAAATTATTCTTGCTATAGTATTTCTCTAAAAGTATC s canFam2.chr12 70297468 347 - 75515492 ATACTTATCATTACTCAGCA--AATCAAATGCAAATGAC--------TCAAATG-aaattttaaatataattatttattttaaatga--catttaaaaaaatCAGATGTCAGCACATATATTTAAAACATTTTGCCTCGAAAGTTTTAAATTGGGATTGAACCAGAAT-TTAAAAATATAGATGATAGCACAAGTAGAATTCTACTGTTCTAATAATCGACAATATTGAGGAAAAGT-AATCCCTATGAGTGTAA-ATTTTGGAATTTTGAAAAATACTTC-----AAAGTGGTATCTTATAAAATCGTATTTACAACAATGGAA-TTGGTTACAAA-TATTTTTACTAGAGTATTTCTCTAAAACTATC a score=10201 s hg19.chr6_ssto_hap7 4135815 368 + 4928567 TCTTGCACCTGAGAGATGGTGGAGCTTGAAAGGCTT---ACAATGGGCACTAAAGAGAGAAGATGGGGGCAGGGGAATGCTTCCACTCTCATTTGTCCTCCTCTCCGCGCCTATGCACTTGAGATAGTCATGCATTCATTATTATCTTTGAGTCGTGGGAATATTGGTGTCCATGGGATTTAtgca-----ccataagaaatgtaaaaggaagaccttcacacggtagccatatgatatcacatagaaacctggatctatacaaagaaat---aaacgctggaaatgaaacatttTTTCACATTTA-----AAAAATGGTC------------------TAAAATGAggcttctcaacctcagaactgttggcattttgtttcaggtgattattttcttgta s canFam2.chr12 70298386 386 - 75515492 TCATGCATCTGAGAGATGATAGATTTGAGAGGGCTTTAAGGAGTGTGCTCTGAAGAGAGAGAGAAGGTGGAGAGAATGAACCCAAAACCCATTCAGTCTCTTCTTTCACCCTGTGCACTTCAGA--GTCATGCATTCCTTCTTACCTTTGAGATGCAGGAAGATTGAAGTCCACAGAATTTTTGCAAACCTCTATAACA----------GAAGGCCTTCATGTGTTAGAAATTTAATATCAGACAGAAACCTGGTTC-ATACAAAGAAGTGAAAAGCATTGGAAAAGGCATA---AATCAAGGTTAGGTAGAAAAATCATCTTTTCTTTCTTTTCTCATTAAAAAAAAGTTTCTCAACCATAGAACTATTGTTATCTTGAGCAGGATTATTATTTTTTttta a score=10280 s hg19.chr6_ssto_hap7 4136339 225 + 4928567 tctgtcttacaaaatcatacgaagatactaaatcgttgttggaagtcattaagttttggaatagtttgttacatagaaaaatctgacagatacaACAGTCTTCAAAGAAA-TTCTGTTTCCTAGAAATCTCTTAGTGTTTCTGTGGCTCACAGGCTCCTATATGCCTGGAGTGCCACAGGGAGAAGCTTAAATGAATGAAGAAAAAGTAATAGTCTGTCCCAGCCC s canFam2.chr12 5220339 225 + 75515492 TCTGTCTTACAGAATCCTGAGAAAATACTAAAACATTATCTGAAATCGTTGCATTTTGGAGTAGGGTATTATATAGAAAAAGCTGACTGATACAATATCCTTCAAAGAAAATTCTATATCCTAGTGATCTCTTGGTGCTCCCTTGCTTAACAGGCTCTCACAAACCTACACTGCCATAGGGGGAAGATGGGATGA-TGAGGGAAAAGCTATAAGCCATCGCTGGCC a score=10302 s hg19.chr6_ssto_hap7 4136703 260 + 4928567 aattatcttctaatagttttcatcccacattatagaaaataaccctaaggctcaggtattctgagtggcttgcccagggtgatggagctgataaaatcaaaagcagcatggaata--------cgtttattttattacaaaatctataatattttta-ttTTGCTATTCTAGACTCTGTT-ATTGTTGTGAAGCACCTTTAACTACTGCAAGAT---AGAAGTCTTGGCCTTCAGAGTAAAATTTCATCAATGCATAA---------------------------------AATTAGACCTAAAGT s canFam2.chr12 5220686 305 + 75515492 aactatcacataatggttttcatcgcattttatagaaaagtacactaaagcttgtatattctgagtgacttacccaaggtgatacagctgataaAGTCAAAAGTAGTTTACAATAAAAGTAAACATTTATTTGATGACCAAGTCCACCTTCTTCTTACTTTTGCTTCACTGGACTTGGTTGATTGCTGTGAGGCATCTCTAATTACTGCAAGACGGGAGAGGCTTTGGCCTTTGTAGTACAATT-AACCGATGCATAATGATTGACATTGTAGCAGGGCAAAAGAGTTGAAAGTCAGAACTAAAGA a score=17324 s hg19.chr6_ssto_hap7 4137522 433 + 4928567 AGACAAAAGTAAGAAATTGGTTTCTGTTAAAA-TGGTATACTGTTCTTCTGAGTCTAATTTACTGATTATTCTATCTTGCATTAAAATTATGACCTGAAAACAGAAGCAAATAGAACAAGGTTCGCTGTATTCTGGCTGGATGAAGCAGGAGGAGGAGAGGGACACAAAA-CCAGTTAAAGATAGAAAGAGCATCTATTATCTTTTAGTCAATGACCTGGCCTTGCTTGGACTTTCCCTCCATCCCACAGGATGTGAGATCTGAGACTGAACCCACG-ACTTCCCTTCTAAGATACAATTCTGATCC-CACATTTAACACCCTAACTTCCTAATTAGAGTTGAGTTTT-TTAAACTGTGATATTAATAGGGGAAATTCTGGAGTGCTATCAGGAAAGATTTAGTTCATTTGCCAAAATCTTAAGGAATTTCTGTCAGA s canFam2.chr12 5286528 412 + 75515492 AGACAGAGGTAACAAGTTAGTTTTTGTCAAAAATGGCACATCATTCCTCTGAATCTAATTCACGAATAATTTTACCTGATGTCAAAATTATGACCTGAAGACAGAAGTGACTGGAAC-AGGTTCATTGTG---TGACT-------GCAGGAG-----ATGAGACACAGAGTCTGGTTACAGGCAG--AGCTCATCT----TCGCCTAGTTAACGACATGGGCTTGCCTGAACTT---CTCCATCCCACAGGATTTGAGATCTGCAGCTGGACCTTGGAACTTCCCATCCAAGATGCAATTCTGATCCACATGATTAGCACCCTAACTTCCTAATCTGAGTTAAATTTTCTTTAAAGATGATATTAGTAGGCAATATTCTGGAGCCTCATCAAGAATGGTTTTGTCCATCTGTCACAGTCTTAAGTAATTT-TGGCAAA a score=20624 s hg19.chr6_ssto_hap7 4137955 555 + 4928567 TACAAAGCAGGTAAGTCTGGATACAGGGGAAAAAAGATAGAAATGTATTATTTACTACACAGCAAAGAGGATGCTGCACGGTGAAGGGAGCAGAGCTCAACTGCAACCTCAAAAACCCTCTTAGTTCACAATGGCAGTGGCTAGAAAGAGTAAAAAGGCCACGTACAGTGTCATATATCTCTCCTAATCGCACTAGGGCACTTACTCTGAATCCACACAGAAGGAGACACCCCTCACCCCTCATGAGGAATCATGGCTTGCCCCTGTAGCatcccatctctactacttacgagccatgtgaccctgggaaaagtcctttacctctctgagttttaatgtcctccttgaaaaatgtggatgatactaAAGTATGACAAGTAT-------TTATAAAGAGTAATTCATTCCAAGTGCAGTATATGTACAT--------TCCTCACAACTGCCTAATGAGGTACCAtcagtgcctccggccaaagaccacgaagagcatacccttgaatgaacaagttggctttattgttcattgcaatgatggagaaaagtcaccatggggaatcatgcagc s canFam2.chr12 5287415 541 + 75515492 TACAGGGCAGGTAAGTCTGGATCCAAG---AAGAGCCCAGAAACATGGTATCTCCTGCACAG-AAAGAAGA------------AATGAAGCATGCCTCAG-TGAAACCTCAAAATCCCTCGTGATCCATAAAGGCACAGACTTGAAAGAATAAA---TCCAC-CGTAGGGTCAAATATCTATCCTAATTATGTTAGGACCTGTATTCTGAATCCACACAG---GAAACTCCCT----CCCCTACAAAGACTCATGAGTGACCCTTGTCattctgcagctctgc-actcaccagctgtgggaccctgagcaaagtccttcacctttctgaaactcaatatcttccttgtaacgtgggggtgatCTTCACATACTGCAGGTATAGTGGGAGCCCCAGGAATTTTTCATTCCAAGTACAGTATATATATATATATATATTCCTCACAACGTTCAGATGAGATGCtgtcaatgcctccagccaacgaccatcaggagcacacctgtgaatgaacaagttggtttaactgttcattgtcatgagggagaaaattcaccatggagaaaaatggggc a score=15929 s hg19.chr6_ssto_hap7 4138601 642 + 4928567 gtgggggtggactaggcaagtctaagaccca---ctgggaggtggtcatcaggaaaggcaggttgaaattcttagcactggctgacgtgctgtccacagtggaatttccgtttcctcagagaagcctcagctctgctcttaagacttttcaactgcttagactaagctcacccaatttatctcagataaattct--tacttaaagttaactgattatgaactttaatgacatctacaaaatatctt-cacagcaacacctagattattagtgtgtgaataactggggaccacagtccagtcaacacataaaattgaccattaATCAattgtaagatttgtgcttgtgttaggtaattttgaggaggagttaagaaagagggacttcatttttaactggattctgacagaaagcagggagtggggatggcaatgctatgattgggtagcttcataaatactacctagagggacggaagactatcctgaggctacggctgtgattggtaaagaagcagcaatcactctt----tcgagagatg-----tgcctggttatttttgtagtttggacaatattcatgttttgtctgggtgcagacgtgatgactgagtggccttattttctgtctcaatccatcgcactc----------------------------acagagtacctg s canFam2.chr12 5288024 595 + 75515492 acggggcttgatttcacaaccctgagatcaagacctgagctgagatca-----agagccag-----------------------acgtttaatccactgag-----------ccatctgggtgcccACATCTCtgctcttaagactttacaactagttcgttcag--tcatccagattacctaggaagatctctcttacttaacgtcaactctttatgtattttaatcacatctacaaaatatttttcagagcaatacccacattaacattgattgaataactgaggactataacctagccaccacataaaagtgacaatTTAACTACCataaggtttgggttggtttt-ggtgattttgaggaggatttaagaaagagagact-ctctcttagttg--ctttgtcagaaagtagtggt--gggatggaag----------------------------------gaaggaaggaagactagattgaggctaaagctctaacttgtaaggaagcggcagccagtcatgtcatctagggaagaggattgcttggtcacacac---------acaatgtttgtgttttgtctgtgttcagacgtggttactaagtggccttgttttctctctctctctctctctctctttttcCTCTTGATCCATTATGGTCATCACAGAGTGGCTG a score=13701 s hg19.chr6_ssto_hap7 4139245 494 + 4928567 tgattctgatgttctatgaaattgattatcttcaacaggagaat--caaaacc-agctgtgc-----acaccaggctagctcctagcaaccccaaggccttgttaattgcatccaggcagcccccaggtatcaggACACTTTTTATTTTACCTTTTTT-TAGTCTCTGCCATTGGGAGGCAAGACAACATGCTGAGAATCTCAGAAGGCCATTCAACAAGGACAGAGTGATT----CTAAATGAAACCTCCATTACTAACTTGTTGTTTCTATAACATACAGAAAATAGATTCATCTGAAAAAAGGTAAG-----TTTCCCTGTGATTACTACATT-----TTAGCTCATTCCCTAGTCCCTTGCAA-TATCTGAAATCTTAATGTGGTTGGATAACAAATATGAAAAGATCCAGTAGTTTAAGAAAAGTAAACCTATTTTCTAAGTTAAAGCAATTCTCCTT-ATTCTACTCTCAATATTTGACTTGACATTCttaaattaaaaaaaaaaaattaCTg s canFam2.chr12 5288820 472 + 75515492 tgatactgctgttctatgacattt-ttatgttcacctggaaaacaccagaacctggctgtgcgtagtacacctggtta----ctagta------------------------ccaggtggctcccagatgccagagcttttcctgtctcaGATTTCCTACCATCTCTGTCAGTATAGGGTATGATAGAATGTTGAGCAAT--AGAAGGTCATCTAACAGGCACAGAGTGATTGATTCTAAGTGGAAACCCC--TAGTAACTTATAGCTTCCATAACA--CAGAAAATCGATTCTTCTGGAAAAAAAAAAAAAAGATTTCCCTCTAAGCACTGCCTTCATCTTCAGCTCAATTCCTAGTCCCTCACAAATATCTGGAGT----ATGTAGCAGGTTAAAGAATATGAAAAGTTCCAGAATGTTCTGAGAA-------CATTTTCTAAGTCACATAAATTCCCCCTCATTCTACCTTCAACATTTGATTT-ACATTCTTAAATGTAAAAAAAATTTTCAAAA a score=53846 s hg19.chr6_ssto_hap7 4140057 1618 + 4928567 TTAGAGTAAT----TGAGCCAGCCAAAGCT-TTTTTAATGTAATCAATGTCCCTAAATTTCCTTTAAATATATTCAAGCAGCTCCGAAACACAGAGCATAAAGATTACTAG----AAGCAAAACAAAAAACTGTGTAAAAGAT-CGGTTACTGTAGGCAGCACCGCATGACAGTCTAACCCCTTTAATTGCCCTGGT-CAAAAACACCTGGAGCTTTTGAGAACTT------------ACCCAACTGGATTTATACAAGTAGAAAAGGCAAAGGTATTGCTTGGCTACCACCAGCAGAGAT-CCCTAGGAAGGTGGGGTCAAGTCAAAATTTGGGGAATACCATATACACTATGGAAGCAAAAA-GAAAAATAGCTAACCCACATACAGAAGCCAGAGAAAGGGGAGGGAATGGGGACTGCCAGGGAGGAAAATCACTtcagggaagaattcctggagaatgtaacccagaaaaccctgaaggatgCCATATTATTGATGACCTTACCTATCCAAGCGGCTGCTCAGAAATTCCCGCCCCTCTTGACACTAGCAGACATGCACACATGACAGAAGATTCAGATTTAGTATCTTCCCTTTATTTATAGAAAATTTCCTCAAGACCATGCTGTGTGGAGGATGTGTCAGAACCA-GAGGATGTCCCTGTCTTCTTCCAGGGCTCTTAATATAAACTCTGCAACTGGCAAACAATATGTCACCATAGGGGATTTTTCTGATTGGCCAAAACCTGACCTGGCAGGGTTTGGTTTGGGTGTCTTCAGATTTGCTTGTCTCGA---GGTCCTCACAATTGCTCTACAGCTCAGAGCAGCAACTGCTGAGGCTGCCTTGGGAAGAAGATGATCCTAAACAAAGCTCTGCTGCTGGGGGCCCTCGCCCTGACTGCCGTGATGAGCCCCTGTGGAGGTGAAGACATTGTGGGTGAGTACATGAGTGAGGAATGTTCTCTGGAGCTGAAAAACAGTAAATTAAAGGAAAAGAGAGAGTGTAATTTGCTAAGAAATAGTAGAAATTTCCCAAGGGTCTTTTCAATATTAAG-AAATTTTAAAATTATGGCAGTTCCTCCTTTAGGAAACCAGAGCTCCAACCGACTCTCTTTGCTACCTGTGCTATTG--GAGTTTACCAAGGACGTTGTTCTGTTT---ATATTATATCCAGAGACTATAGCCTGGAGGTCTGTGTGGCATTCCATCATGATTGCCtcaaagactagggatgtttccatgaatggagtatttttttgttattaaaaatttctgaactgttactcccaaatttctctgaacaac-ttttgaagcttttcatatgcctc-ctatagcatatgttggggtagatagttccatgaagtatgtacactctatagatataaagaaagaggttcttttctttctctcagactta----catttCCACA-TGGGAATTGGCACAGGTGGGGAGTAGGTGAAAGAGCCCAGCAGGCTGAATGCCTTCA-ACAA-TCATTTTACCACGTGGTAAATGTGGTACTTACTCTCTGCTACCTCATATATGTCACCTCGCTTATGATCAAATAAAATGGGCATGTAGATATGCTTTATGAATAGTAAAAACA---------------------------TGAATGTCAAC---------TTTTTTTAACTTATTCCTATTACAGGTATAACT s canFam2.chr12 5289526 1598 + 75515492 TAAAAATAATAGAATGAGGCAGCCCAAGTGGTCTTTAATGTAATCAATGTCCC-AAATTGCCTTTAAATGTAGGCAGGCAGCACTGAAACA--GAGCGTGAAGAATACTCAGGGTAGGGAAAACATGAAGTTG-ACAGATGATGCAATTACTGTAGGCACCATTA-ATAACATTATCACTTCTTTTATTGTCCCAGTGCAAATAC---TGGAGCTTTTGAGAACATGAGAAGAGCTTAATTCAACTGGATTTACGTAAGTAGAAA-GGCAAAGGTGTTCCTTGGCTATCGTCACAAGAAATACTCTAGG-------TGATAAATCAAAATTTGGACAATTTTATATACAGTATGGAATCAAAAAAGAAAGATAATTAACCCACATGTGGACGCCAGGAAAAGAGAGGGAGTTAGGGATTTTTAGGGAGAGGAATCCTTTTATGGGAGAATTTTTGGAGGCTGTAACCCAGAAAAGCCTGAAGAAAACCATGTAAGTGATAATGTTATCTATACATGAGGCTACTCAGTAATTCCCACCCC-CTTACCACCAGCAAGCTATCATACC---CATAGGAATGTGTTTTAATACCCTTCCTCCTTTCCTAGATAATTCCCCCAAG-TCACTCAGAATGGAGGCTACCTGAGAAACAAGGGGATTTCCCAATCACCTTCC-TGCTTCCTAGTACATCCTCTAAAAGTGGCTACTGAAGTGTCATCATAGGGATTGTGTCTGATTGGAGGGAACCTGACCTGGCAGGGTTTGGTTTAGATGTCTTTAGATT--CCTTTCTCAGTTGGGTCCTCACCATCGCTCTGCAACTCAGAACAGCAACTGCGGAGACCACACCGAGAAAAAGATGACCCTAAACAGAGTTCTGATTTTGGGGACCCTCATC---------ATGATGAGCCTCTCTGGTGGTGAAGATATTGTGGGTGAGTGCACACCCGAGGGATGTGGGGACTAGTCTAGGGAAAAGAAATTAAAGGGGAAATGAGAGAAT-----GGTATAATATAGTGGAGACTCCTCAAAGGTGTTCTCAATACTAAGCAGATCTAAAAATTATGGTCATTCTTCTTTCACAAAACTA----------------------CTGCCCATGCAGTTGCAGAGTTCATCAAAAATATTATTCCATTTGGAATATCAGATCCAGTAAATATAGCCTGGAGGGCACAATGGCATTCATTTATGATTATCTCTAAGGTTAGGGATGTTTCCAC-AGTGGA----TGTTTTGTTACTAAAT-TTCATGAACTTTTGTTCCCAAATATCTCTGAACAACATTTTGAAGCTCTTTATAAGTTTTTCTGTAGTCTCACTTGGTATAAAGAATCCCATGAATTATGTATGTTATGTAGACATAAAGAA---GAGTATCCTCTTTGTCTTATATTTATATCCATTTTTATGCTGGGAACTGGCAT--GAGGATAGTGGGTATACAAGTCCAGT----TGAATACCTTTAGACAAGTCATTCTACCACAAGATG-------------------------TCATATATGTCACATCAGAAATAATCAAATCAAATATTCATTTAGAAATATGTTTCCAAAAAAAAAAAAAAGAAATGTTTCCAATTGTGATGACGTGTAAATGCCAATGATTATTTTTGTTTCTTAATTGTTACTATTACAAGTGCAGCt a score=17024 s hg19.chr6_ssto_hap7 4141677 500 + 4928567 GTATTTTTTCTTTAGCAAAGTAAGGAATAT----------ATTTTAAAACTGAGAACTTTATGATAAAATGCTTGGTAAATTAAATTATTTTATTCTCAAATTGTCAACCCAAATTACTAGTTCTTCACCTTATCTAATGAAGTCTTATAAAGAGAAAAATGGGCAGGCACAGA-TAATTATTTGGTCCCTTAGTCCCCTCTGCCTTTGTCGTCCATCTCTTCCCACCT-CTCTTCATGCATCCCTTTCTCCCTCTTCCCTTTCAGGATCCATCTCTGAC-----TCCCTGCTCCTTTACAGACATGGGCAGTGGGTTTGTAAAA-CAAAAGTTGGAAA--GTCAAATAGTTAAAAGGGGAAGTGAACTGGAAGCTACTCTAAACTTTCACAACCTTATTAACCATGGCTGCTCCCATTCTGATTTTGTTTGGCAGTGGAAGTTTCACCTGCTTCTCCAGAGCACTTGGCTTTTTTGTTTCAAATTTCCTTTCTTCAACCTCACACCAGAGTGCCCCGGT s canFam2.chr12 5291571 474 + 75515492 ATTTTTTTTCTTTAACAAAGTAGAGAATATCTTTATTTTTATTTTACAATTGAGAATTTTATGATGGAAGACTTGCTTAATTAAGTTATATTGTATTCAAATTATA------------TGACCTCTCATCT-ATAAAATCGAGACCCTTAAAAGAAAAACTGGGGAAGCATACACTAATTACTTAATCCCTAAGGCCCATCTCTCTTCATTGCCCACCTCTTCCCACTTTCTTTTCAGGTATTCTTTTATCATCCTTTCCTTCCAGGATCTATCTCTGGTCTTTTTTATTGTTGTTTTATTGACATGAAGAGTGGGTTTCTAAAAATCAAAGTAGAAAAAAGTCAAG-AGTTAAGAGGGGAGGTAAAATGGAGCATACTCTAATACTCACCAACTTTGTTAACCATGACTTCTCCTATTCTAATTTCACTTGGTGGT------TTCTCTTGCTTCTCCAGAGAA-------------TTTCCATTTTCCTTTCTTCA-------------GTGTCTTGGT a score=4130 s hg19.chr6_ssto_hap7 4142177 132 + 4928567 caggctcgacttatccattaggaacagtgtgggcagtgaaggggaccctccaaactgtaaagctacaagagaacgttttaactccttttaaaattagaagaaaaatgaagttttacagtctatgaaaatgtt s canFam2.chr12 5226170 121 + 75515492 caggctcaacttatccagtaagcacagtgc---------caagggcctatgatgcttctagggcaccataaaatgttttagtttcttctaaaattagaag--aaatgaacttatgaggtagaggaaaatgtt a score=5672 s hg19.chr6_ssto_hap7 4142609 155 + 4928567 ttaacttttaatgtagcctggattgtatttgtctttataccaatacaatcagaagctgtaattttccgtatttttatggaggaaggcgcccacaaaagcaacagtgctcggggctcacaagtcagaattcagccctgGGCATCCCTGATCCTGGG s canFam2.chr12 5226291 143 + 75515492 ttaatttttaattcaacctggattatatttatctttataccaatgcagtcacaaagtgtgatttctaata-ttttatgaggaaagggacc--------caatagtgattagg-ctcacgagtcatacgacagccttgACCACTGCTGAT--TAAG a score=-474 s hg19.chr6_ssto_hap7 4142764 250 + 4928567 CTTTGCGTGGTTC-TGCTACCTGGGTGCCTGTCAGTCTT----CCCCAAAATCTATGTAATTGT-----CAAAAAT-TGCAAT---TGtcattcaatacacatgtttgagcacacaatgagctaacttttgggaattcaaagataaaaaatcatgctgtctgccttgcagagggtgcacaaac-cagtgatgg--aaacagTATGGGGCACAGGAAAGCAGAAGGCCCTGCTGAGCAGGACACTGGCCCAGCAGAGGCTGAAACTAT s canFam2.chr12 5292182 187 + 75515492 CTTAGTGAGGTTCCTTCTACTT-----TCCTTCATCTTTGAATCCCCAAAATTTATCTCACTGTTTGCTCAAAAGTGTGTAATGAATGTCAATT--------------------------GCTATTCTCCAGGA--TCACAGATA-------------TTTGGGTTAGTGGAAGTTGATAGACACAGTGATAGCCAAACCATATGGA----------------------------------AGTGAATCAACAGTGATCAAGGCTGT a score=1778 s hg19.chr6_ssto_hap7 4143014 51 + 4928567 AAAAATGACTTGGTTCCAGCTGGGCCAGTAGAGTGATGTCCTCCAGCAACA s canFam2.chr12 5226629 48 + 75515492 AGAAGTGAATCAGTTCCAGTCAGCCATGTAGTGTGATG---TTCATCAACA a score=1019 s hg19.chr6_ssto_hap7 4143065 25 + 4928567 CTTAGCACCCAGGACAAGTACCAGA s canFam2.chr12 5292369 25 + 75515492 CTTATGACCAAGGATAAAGGCTAGA a score=1262 s hg19.chr6_ssto_hap7 4143090 67 + 4928567 TGAAAAGAAGGATTGCATGTATTCCACATATATTCATGTTTGAACAAGGAGTCAA---------------AGTTTATTGTAA s canFam2.chr12 5226702 67 + 75515492 TGGAAAGAATAATTG-----------CATATACTCATGTTTGAAAAAGGAACCAAGGGAACCAAGGATAAAGGCTA----GA a score=43530 s hg19.chr6_ssto_hap7 4143157 1367 + 4928567 GGATAAGGAGTCTTTGTTGG-TGGCCTGTTAAGTAACCAACCAGG--GCAGTCATGCTGGGTAGGGAAGAAGGTGAGCTGGAGGAGGAAAAGACAAACTTGGAGAGCCAGACATTGAGATTCCATTGAGGCGTTGGAGGTCACAACGCGGTCAAAAACATGTT----GAGAGGACTTAGCTGCAAAGTTGTTAACTAAGTAGAAACCTCAAGGATGAATTTTAGGATTTCTCCAGGAAATCCTAAAAGATAACTTC-TTTCAGGGAGAAAA------AACAGACCCTTGCAAAGACATGAAAGGAAATGTAGTTTGGTTTGATTGGCAGAT-----AGTTGTGAAGAATGTCGGACTGTAAGGCTGTCGATATCCTCCTCACAGAATTCCCCAAAGTACATTGTATTTGCTCCCTTACCGACCTGATTCTCCCACTATTCAGTTCATTCCTTGA------------TGCTGTTTTAAGC---AACCCCTGCTC-------TGTCTGACA-CTTTTGGATGCTCAGTAAATGAGGAAGGAAGGAAGGAAAGATAAAATGGTAAAGGGCTCACACATGTCTTAACAAAAATGTCCAGTTCGGCTCATTTGGCTATACTTCATGGCTGCTGCTCTGCCCTGGCATCCTCGGATAAGCTCGCTGCCCATTAGAGGAAAAAGGGTTTAATTTACC-TGAGTCCTCGAGTGAATGTAAT----TGTTGAATCAGAACACTATAGATATTTAGTAACCTCCTTCAGAGGAAAAAAAAAAGTGGGG---GCAATGACAGAAATTAAAAAACCAGTTGAGCTTCCACTTTTCATTTCAGAAGAAATCAGGTGCTCTCCTCTAAGGACCACTACTATTAACAAAACAGAGACCTTAGAA---GAATTGTTTATTTGTTATAAATGT----ATAATGTTGCTATTCTTGTAATAGTCTTTCTTGTACCCTATAATTGTTAGAAGAAATTATTTTAAGTTAATACGTTCCTACATGCTTTTCTTTGGTTTAAAAAAAAA------------------------------------AAAAAAGGAAAC----TCTGTGTAGAAAGTGTCCTGTTCTGATCTAGTCCTGACAGGAAACGAAGTATAATCAACTTGTTATTAACTG------------AGAGAGAAAACTTAGGAAGCAGAGGGAAATAAACTGAATCTCTGAGTAAGAAAACTAAATCCTATGATAACTCATTCATTCCTTCCtttgttt-attgcaatattcatcataagcttatgatg--tgccaggcactaag-taggcactcaggaaataacagacgtgtgac-------gttctgcctttgtggagcatatgttatagtgagaaagacagaatcagttctaacctgatgactaccaacgttaggcaaggaggaAGCAGGTGTTAGGAAGATTGTTCAGGGACTGTGCCAAAGATGAAGCCCATAATATTTGAAAGT s canFam2.chr12 5292394 1433 + 75515492 GGATTAAGAGGGTTTGATGGAGGGCCCTTTAAGTAATCAACCAAGAGGGGGTCGTGCTGGGAAAGGAAGAGAGTGAGTTGGATGAGGCATAGATAAATCTGGAAAGCAAGACATTGGGAT--------------GGAGACTATAATGTGGTCAAAA-CATGTTCGATGAGACTAATTAACTAAAATGTTGCTAACCAA--ACAAACTTCGGAAAGGAATTGGAGG---TACCCAGGAAATC-TGAAAGATAACTTTGTTTTAAGGAGACAACCTCTAAAAAGACCAAGGAACATACAAGAAG---AATGTGTTTTGGTTTGACTGGCAGATGAGATATTTGCAGAGGAAGTGGGAGCATAAGACTGCTGCTGT--TCCCTGCAGGACTCACCACAGCGTACTGTATttgttcctgtactcacttgactctcccaccacgcaataaactccttgaagacagaaaccatgctgatgggtgtttgactccctgctcctcatgatgtctgacatcttgctgatgttcagtaaatgAGGAAGAGCATAAGGAGG----AAATGATAAAAACCTCACATATCTCTTTACAAAATTTTCTAGTTAGGCTCACCGGGTGGAGTCATACTGCTGCCATTCTACTTTGGCATCCTTGCA-AAATGCACTGTCCATTTGAAGAGAAGGGCCATTCTTTACCAGGAGTTCTAAACAGATAGAAATGCAATGCAGAATAAGGA-----GAGAAGTTTACAAGG-------AAAAAAAAAAAAAAAGAGGGATGAGGAGTGACAGAAATCTAAAATCTAATGAATCTTCCATTTTGTACTTCTGAGGAAATCAAGTGCTCTCCTCTGAGGATTACTATTGTTAACAAAACAGAGACCAAGGaatattatttatttatttattatataCTTTGTAATGCTGTTGCTGTCCTTGTCATACTCTTTCTTATACCCTAAAATAGTT---AAAAATTCTTTTAAAACAATACAATCCTTTGTGCTTTTCTTTGACAAAATAAGAAATAGAAGAGGGCACAGGAGAGAGGAGGAGGAAGAAGGAAGGAAGGAAGCGTTACCTCTGCAGAAAATATTCTGCTCTGAACCAGTCCTGGGGGGAGAGCAATCAAAGTGTATGTGTTATTAACTGATGAAAGAATTAAGAGATAAAACTGATGAAGCAGAGAGAAGTTAAGTGAATTTCTGATAAAGGAAGCTATAGCC-ATGATAATTTATTCATTCCttctttcatttcattgtaatatttatcataagtctactgcgcataccaggtgctgagctacacacacgggaag-agcagcagcaagactgttgtaattgtgctctcacggagcatacacgatagtg-gaaaagcagagcgtattctgactggacaactaccaacacggag-agagagggggcaggtgctgggaaacgtgcctaaagACTGTGCCAAGAATGAAGCGCATA----TTTAAAGT a score=113080 s hg19.chr6_ssto_hap7 4144524 2367 + 4928567 G---AGTTTCTTCAATCACTTTCTGTATTAAGGTTCTTT-CTCCCTGTGTTC-CACCCTCCTGCTTGTCACCTTCACTCGTCAGCTGACCATGTTGCCTCCTATGGTGTGAACTTCTACCAGTCTCACGGTCCCTCTGGCCAGTACACCCATGAATTTGATGGAGACGAGGAGTTCTATGTGGACCTGGAGACGAAAGAGACTGTCTGGCAGTTGCCTATGTTTAGCAAATTTATAAGTTTTGACCCGCAGAGTGCACTGAGAAATATGGCTGTGGGAAAACACACCTTGGAATTCATGATGGGACAGTCCAACTCTACCGCTGCCACCAATGGTACGTGTCCACCATTCCGCCTCTCTTTACTGAAACTAATCTTTCATACCAAGTTTTACTCCCTTCTTCTC----------------------------AAGAGATTTCC--AGATCTTCTCATGGTAATTGCTGAAATTTTATCATCTCCCATCTCTAAAATCACATATTCCCATGTAATACAAGGGTCTTT---------CCATTATGTATTAATTCCT-------------------------ACTTTATTAAACATGCCCACAGAGAGAAGGGCACAGGAATAAAGCAGAGGCAATGTGT---CGTTGCTCCCAAGCAGAAGGTAAATAAGACCTCTTTGACTATCAGGTGGTGAAATGCTGGTAGGAGGGCTCTTCCAGGATGTAATGCAGAAGCTCATGGCAGAGCTATTCACACTTCACATCAGTGCTGTTTCCTCACCACAGAGGTTCCTGAGGTCACAGTGTTTTCCAAGTTTCCTGTGACGCTGGGTCAGCCCAACACCCTCATCTGTCTTGTGGACAACATCTTTCCTCCTGTGGTCAACATCACCTGGCTGAGCAATGGGCACTCAGTCACAGAAGGTGTTTCTGAGACCAGCTTCCTCTCCAAGAGTGATCATTCCTTCTTCAAGATCAGTTACCTCACCTTCCTCCCTTCTGCTGATGAGATTTATGACTGCAAGGTGGAGCACTGGGGCCTGGACGAGCCTCTTCTGAAACACTGGGGTAAGGATGAGTTCCAC--------------------------------------------------------------------------------------CACTTCATGGGTTTCTAATAATAGACTTCACTCTTCTCCCTAAGCCTGGGGCCTTGAGTCTT----------GCAGAGCCA--GCCCTCCACCCCATCCCATCCCA---CACACATGCACATGAGCACACTGCACATTCTGACCTCAACAGCTCCACTTTCACAGAGCCTGAGATTCCAGCCCCTATGTCAGAGCTCACAGAGACTTTGGTCTGCGCCCTGGGGTTGTCTGTGGGCCTCATGGGCATTGTGGTGGGCACTGTCTTCATCATCCAAGGCCTGCGTTCAGTTGGTGCTTCCAGACACCAAGGGCTCTTATGAATCCCATCCTGAAAAGGAAGGTAA-GATTGAGATTTGTTGGAGCTGAAACCT-------CAGTATGAGAGGGAGGAAAGTGGGAGGGGGTTGTGGACATGAATGTGGTT-GAAAGTTGTAGGCGAATTGGGAAGTGGCATGATGATCACACAGGAGGCCCCTCAGACCCATCGATCTCATGTCTGTCCTGTTGCAGGTGCATCA-----CCATCTACAGGAGAAGAAGAATGGACTTGCTAAATGACCTAGCACTATTCTCTGGCCTGATTTATCATATCCCTTTTCTCCTCCAAATGTTTCTTCTCTCACCTCTTCTCTGGGACTTAAGGTGCTATATTCCCTCAGAGCTCACAAATGCCTTTCAATTCT-----TTCCCTGACCTCC---------TTTCCTGAATTTTTTTATTTTCTCAAATGTTACCTACTAAGGGATGCCTGGG-TAAGCCACTCAGCTACCTAATTCCTCAATGACCTTTATCTAAAATCTCCATGGAAGCAATAAATTCCCTTTT----GATGCCTCTATTGAATTTTTCCCATCTTTCATCTCAGGGCTGACTGAGAGCATAACTTAGAATGGGCGACTCTTATGTTTTAGGCCAATTTCATATCATTCCCCAGATCATATTTCAAGTCCAGTAACACAGGAGCAACCAAGTACAGTGTATCCTGATAATTTGTTGATTTCTTAACTGGTGTTAATATTTCTTTCTTCCTTTTGTTCCTACCCTTGGCCACTGCCAGCCACCCCTCAATTCAGGTACCAACGAA-----------CCCTCTGCCCTTGGCTCAGAATGGTTATAGCAGAAATACAAAAAAAAAAAAAAAAGTCTGTACTAATTTCAATATGGCTCTTAAAAGGAATGACAGAGAAA-----TAGGATACAAGAATTTTGAATCTCAAAAGTTATCAAAAGTAAAAAATTTTGTTACCAAAAGTCAAACTGCATTCTCAAAACTTTA-------AATTTGTGAA----GAATGACAACAGTAGAAGCTTTCCTCTCCCCTTCTCACCT-TGAGGAGATAAAAATTCTCTAGGCAGGAAAAGAAATGGAAGCCAGTTAGAAAAACATTGAAATAAg s canFam2.chr12 5228409 2546 + 75515492 CCACAGTTTGTTCTGTCACTTGGTTGAATAAGGTTCTTTTCTCCCTCTGTTTTCTGCTTCCTGCTCCTCACCCCTGCTGCTCAGCTGACCATGTTGCCTACTACGGCATAAATGTCTACCAGTCTTACGGTCCCTCTGGCCAGTACACCCATGAATTTGATGGCGATGAGGAGTTCTACGTGGACCTGGAGAAGAAGGAAACTGTCTGGCGGCTGCCTGTGTTTAGCACATTTACAAGTTTTGACCCACAGGGTGCACTGAGAAACTTGGCTATAACAAAACAAAACTTGAACATCATGACTAAAAGGTCCAACAAAACTGCTGCTACCAATGGTATGTGTCTACCATTCTGCCTCTCTTCACTGAATCTGTCCCCACATCCCAGCTCTCTTTCCCTTCCTCCCTAGCATAGATACTCTTCACTGTTTTCCAAGGATATTTCCCCAGATCTTCTCATAGTAATTACTGAACCCTCATCCTCCCCCATCTGAAAACTGAAATATTGCCATGTAATGCAAGAATCCTTACTCCCATACCATGTTCCTTGAATCCCTCAAGGAGACGCCCTGTGGATATGCTACTTTAATAAGCACACCTGCATAGAGAAGGGCTCGGGGGTAAAGTATAGGCAGTGCATATACAGCATTCCCAAGCAGAAGGTAAGCAAGAACCCTTCCACCACAGCATGGAGAACTGTTGCTGCGAGGGCTCCTCTAGGACACAATGCAGAGCCTCAAGGCAGAGTTATT-GCAATTCATGTCAGTGCTGCTTCCTCACCGCAGAGGTTCCTGAGGTGACTGTGTTTTCCAAGTCTCCTGTGATGCTGGGTCAGCCCAACACCCTCATCTGTCTCGTGGACAACATCTTTCCTCCTGTGATCAATGTCACGTGGTTGAAGAATAGGCACTCCGTCACAGAAGGGGTTTCTGAAACCAGCTTCCTTGCCAAAGGGGATCATTCCTTCTCAAAGATCAGTTACCTCACCTTCCTACCTTCTGCTGAGGATATTTATGACTGCAAAGTGGAGCACTGGGGCCTGGATGAGCCACTTCTGAAACACTGGGGTATGTATGAATTCCACCTCCTGTGGTGCCTTCTTTTCTTTGTCAAGTCCAAAATATCCTGCCTTTCAGCCCCGGAGTCTCAAGGCTCAAAGCATGTTTATGACACTTCA-GGGTTTCTAATAACAGAGTTCACTCTCTTCCCTAAGCCTGGTGCCCTGAGACTTCATAGACCCAACAGCACCATCACCCTCCTCAACCCCCCACTCCATCTCACACCTGTACTTGAACCAACACTGTATTCTGACTTTCACAACCTCATTTTCACAGAACCTGAGGTTCCAACCCCTATGTCAGAGCTGACAGAGACTGTGGTCTGTGCCCTGGGGTTGGCTGTGGGCCTTGTGGGCATCGTGATGGGCACCGTCTTCATTATCCAAGGCCTGCGCTCAGGTGGTACTTCCAGACATCAAGGACCTTTGTGAGCTGCACCCTAGAAAGGAAGGTAAGGATTCAGATTTGTCAGAGCTGAGAGTTGGAGACACAGTCCAGGAGGATGGAAAGTGGGAGGAGTTTGTGGACCCAAATGTGGTTGGAAGGTTATAGGAGAATTGGGAGAGGGGATGATGACAGCACAGCAGCCCCCTAAAATCCAACCATCT-ATGTCTGTCCTATTGCAGGTGCACTGCATGCCCACCTCCCAGAGCAGAAGAGTGGACCTGATAGGCCACCTAGCACTATTTCCTTGCCCAGTTCATCATACTCCTACTCTCTACC-AATGCTTC-TCTGTCACCTCTTCTCTGGGACTCAAGA-ACTATATCCTCTGAGCGCTAAC-----CCTTTAAATTCTACCCCTTCCTTGACTGCCTGTTTTTGTTTGTTTGTTTTCTTTTCTTTTCTCAATTGTCAACTACAATGAGATCTCTGGGATATCCCAACCAGTTACCTGATCCCTC-ATTACTCTGATCTAGCATTCCCATGGAAATAATAATTTTCTCTTTAAGAGATCCTTTAGATCAATTTTTCCTGTCTTTCATCTCAGGGCTGATTAGG------ACTT----TGGTCCCCGCTTTTATTATA--CCTTCCTAATCTCACTTTCCATATTATGTTTCATGCCCAGCAACACCAGAAAATGCAGGTATAGG-----CTGATAATATTTTGATATCTTAGGTAAGGATAATGGTTCTCTCTTCCTGTTATTCTCATGTTTGGGTACTGTCACACTCCCC-CAATTCAGACACCAAGAAAAGTAATATAAGCCCTCTGACCTTGGTGTAAATTTGGTATAGAAGAAATAC-AAAGCCAAGAAATAAGTTCATACTTCTTTTAACATAATTTTAGAAAGCTATGACAGAGAAATAAGTTAAGATAAAGAAATTTTGAATTTCAAAAG-----------------------TACCAAAAGACAAATTGTTTTC-CAAAACTTTAAAATTTCAATTTGTGAAGAATGAATGATGATAGGAGAAGCTTTCCTCTCCCATCCTCACCCATGAGAAGATAAGAATTCTTTAGGCAGGAAAATAAATGGAAGTCGGGTAAGAGAGCATTAGAATAAG a score=7951 s hg19.chr6_ssto_hap7 4147308 198 + 4928567 GAAGCTACAGACCCATTTAGGGGCCCCAGCC-----CCCTGCTCCTCCCCCTTCCTGGCTAAGGAAAGCATGAGCCTATGAGAGAGAAATCCTAGGAAGAACAAGACAGTTGAGACAATGTAGCAGCAGTAGTGGGTGCTGTGTCCTACACTGGATTCGTGGTCTCCTAATAGAAAATCTCTCAGAGGAAATGGGTCCACAGG s canFam2.chr12 5231236 201 + 75515492 GAAACTGCACAACACCCCAATAACTCCAGTCCCGTGCCCTACCCCTCATCCCTCTTGTATTTGGAAAGAATGAATCTATGAGAGAGAAAGGCCAGCAGGGACAACATAGTGGAGATAATGTACTGGCAGCTATGGATGCTGTATTCTCTTCTAGATTCATTGTCTTCTAGTGGAAA--CTTGCAGAGGAAATGGATCAACAGA a score=4364 s hg19.chr6_ssto_hap7 4147520 86 + 4928567 AAACAGCTATGAAATCTGCCAGGATATTTCTGTCCATGCTATCTGCATCAGTGAGTTTAAAATGTAATAGGAGAAAAAAAAGAGAC s canFam2.chr12 5231602 85 + 75515492 GAACAGCTGTAAAATGTATGAGGCTGTCCCTGGCCACACCACCTGTATCAGTGAATTTAAAGTGTAATTGG-GAGAAAAAAAAGAC a score=32407 s hg19.chr6_ssto_hap7 4147729 872 + 4928567 ttctgaaccttatttttctcatccacaatgtgggagtgataatattttccttgcagagttattgacagaatttgaataatcttggtatatagacagtgccttacacgtagtaTATAAATATATAAGAAAACACTGCAGTTATGTTTATAATGGATTTATTAAAAAGAATGGATCATATTATATGAAAAGTACATTTGTTTTCCTTAGCCCTTTAGTGATTTAGGAGATTCAAGCGTAGACGTAAAAGTGAGTTTCTTTTCATATGTTAACTGGAGGATTTTTTTCTTTC--------TTGAGAGGCTGAGATTG------------------------------------------------------GGTTGCTAAGAGAACTCTTAGGACAAGAAGTTGTAAT-ATTTGACTTCGGTTTTTAACTCTCTAAGGGGTATATTCCCTCCTTATGTCCCATAAATTTTAAGTC--AAGGTGAATTATA-TGCAACAGCAGTTTATCCATATTTACTTTGGGGAGGA------GGTGGGGAGACTCC------------GGGAGAAAATAATTATAAATGCAGACTGGGAATTAGTAAGTGCAGGGAATCTGAACCAGTGGTGATCATGAAAACGTCCATCACAgaacacagaggatttttagggcaatgaaactactctatttgataccacaatggtgaataaatatcattatgcgcttgcccaaatccatagaatgtacaacaccaagaatgaaccttaatataaactatggactttgggtgataatgatgtgtcagtgtaagttcataagttgtagcaaatgtacctctgtcatgaaggatgttactagtgggggaggctatgcatgtgtgggaacagagagcatatgggatacatctatctgtactctacaatttttctgggaacctaaaacttctctaaaataaactctatta s canFam2.chr12 5231802 883 + 75515492 Ttctgagactcatctttctcatccattctctggaagtaataatactttccttgc--agttattgacagaatttgaataatCTTGA---------------TTACACATAATATGGAAATACATAAGAAAACATTGC-----TATTTGTATCTGTATTATTAAAAAGAATTGATTATATCATATTAAAAGCACTTCTCTTTTTCTGAGTCCATTAATGATTTAGAAGATTCAAAAATGGAGCTGTGAATGAATTTCTTTTCATAAGTTAAAGAGAGGATTTTGTTTTCCCCAGCAACTTAGAGACTCTGAGATTGGCTTAGGCTAAGAGAATATAGGGTATAGCAGTCAGCGACATGTCACTAGTGGAAGATTGCTAAGAGAATTCTTAGAACAGTAAGTCGTAAGAATTTGACTT------------------GAGGT-------------------------TTTTAAGACCAAAGATATGCTATATTGTAACAG-ACCTTATGCATATTTACTTTGGGGATAATTCAAGGATCAAGAGTTACCTGTGAGGTAGAAGTAAGAGAATAATTAACAATGGAGACTAGGAACTAGTAAATTTAGGGAATCTGACCCAGAAGTTATCAAGAAAATGTAGGTAACAgaacacagagga-ggtcaggccagtgaaactactctgcattgtattataatggtaggtacatgccattacacgtttgttcaaacccacaaaatgt---acaccaagagtgaaccctaatggaaactatggacttt-ggtgataataatctatcaaaatagtgtcatcaattgtaataaatgtaccactctggtaagggatgctgatagtaggggaggctgtacctg-gtggggacacgga-tatatgggaaatctctgtaccttccactcaattttgctgtgaaccttaaattgctttaaaataaactgtattg a score=23212 s hg19.chr6_ssto_hap7 4148601 614 + 4928567 aaaaaAAAGAAAAGAAAAGGTCAACAATAATGATCCCAAATATATAAAATTAAAACTGTAGTATAAAAA---TGGTCACATGAAAATGCATGAATGTGCTAAG---AACTTTTCTGCAATAGGatttaaaataaattttatataaatttCAATGATTCATGAGCCAAGAACCCAGCATTCTGG----AGgtgtgtgcatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAAGGCTTACATTGAATGGCATTATAACCAGAGTCATACAGAAATACACAAATGCTCCCCTATTTAGAATCCTTCCCCAAGAAATACTGAGGAAAGCAAATATAATGGTAGTTGGATTTTACTGAAAGAATGTATTCA---AAAAGTATTTATATAATGTTAAAATAGCATAGCTAAAATTAGTTTTATAAAATAGAGCAAATATATCTTTTTATCAGCTAAAAGTTCAAAGTGAAATCATCattattatattattatattattattataaaCAGTTATAAATCAGGCTGCATGATTTTAAATTAAATGATTCTTAAAAATT------GTTATCTGAATTATTTCAGATTACATACATAAAGTATGACTTCATTAATAGGTAATATCACATTGTT s canFam2.chr12 5232885 608 + 75515492 TAAACTGTATTAAAAGAATGTCAGCAATTATGATGTCAAAGGtataaaataaaaattttagtataaaaaatGTAATCATCTGAAAATGCACTAATGTACTCAGGGAGAGTTTTTGGCAATAGGCTGTCAAATAAATGTTATATAAATCTCAAGGAATCGTGAGATGGGAACTCAGGAATTTGGGTAAAGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCATTATTGTAC-TATAAGGTGTATACTGAATCCCATTATGACCAGTGCCCT--AGGAATACACAAATACTGACTTACTCAGACTCCTTCTCAATGAAATACTGAGGAAAACAAATTTAATGGAAGATGCATTTTATTAAGGGACTTGCTTCATTTGTAAGACTTCatataattttaaaatagaat---ttatattaattCTAACAACAAGCACAATCATTTC--GATATTAGCTAAAAGTTAAAAGTGAGATCATCA------------CATGACATTACTGTAAACAA--AGATATCAATCTTCATGATACTAAATTATGTGATT-TTAAAAATTATTTGAGTTATTTTAATTATTTCTGATTGTGTGCATAAATTGTGACT--ATTAATATTTAATATCATACTATT a score=39659 s hg19.chr6_ssto_hap7 4149654 1113 + 4928567 AAAATCCcatgatgaatgacaccacaaggatgtaagcaacaaaattcagaatatgagaagttctactagattaaataaaaagatttctccagcaaacaatttgcaaaaaaagttaaaaatagagaaaagaaaagctatacacttgaaaaagactgaagaaatatagtaaccaaacgctgagctttgtctagattcatattcaaacaaaacatctgttaaaaaatttatatgaggcaatcagaaaaattg-acactgagtgtattaaggaattatttatctcgttttaaatgtgttagtggcattgctgttatgtttctaaaaagccattatattttagattttcataataaaa-atgtataaatgaa---atatgatacctaaaaatatcttcaaaataatccagtatgtgcctgtatga-taactgggtgggtttacaaaattgctcatgaattgattattgttaaagcaaggctgttgatacatggaattcttctctgtactattgcacacagttgaaattttCTGTAATACAAAGGTTTTTTTTTTAAATGTAT-TCAGGAAAGTCCCATAAACA--TAGGCAGACAAGCATTCTGTTTGAAGTT-ATGTTAGTTTTTCA-GTTTTTCTCATTTTTATCACATTTAGGAAACCCTG----TCCAAGGCCTGCCCAAGACTGTAAGAACCTCTCAGGAATGCAACTATAAAGAATGTGTATGCAGGAACTAATAATAACAAAGGAAAGCAAAGTAATGCTTGCTTTATTATTGGCTGGACTAAGCCCCCAGACTTGTTTATATATTCACTAATTC-ATCAAAAATGC------AAAAATGGTCATTGAGTACCAGTGCTACAATAAGTACTCATAGTTTGT--TGAATGTTATTAAAATAATGTGaaaacaattacattcattatcttcatagaacttacactccagt-gggaggaaaatacatatattacataattccacaa--acatagttacaaggtCTGAAACATTTATAAAGAAAAAGAATGAGGTAAAATGAGAGAGTGTTGCACAGGGACCAGGTATGGTTTGGGGCAGTTTAGAAGTGGCTTGAAGAAATGTATCTTGAGATGAAATAAGGTGGTATACAGTAGGTAAAG s canFam2.chr12 5233510 1029 + 75515492 AAAATCct---------------------------------------------------------------------------tttattcagcaaatcatttgcagggaaaataaagaacagataaa---------attcatattaaaaaaatt-aagatacatatcaaccaaatgttaggttttgtttggatgcatattcaaataaaagaactgttaaaaaattcttgtgaaacaatcacaaaaattgaactctgactctattaagaaatttttaatctaattttgggtgtgataatggca---atgttatgtttccaaaaagtcattaaattttaga-tttcataataacatattcatcgataaaatgatatgatttataagaatatcatcaaactaatcgagtatatg--tgtaaaattaagtgggtaggtttacaaaattatccatgaattaataattattaaaggtagactgttgatacttggcactattctctctaccactacatattgttgaaattttccatgataaaaaGGGTTTCTTTT---AAGTATCCCAGGAAAGACAAAGAAAAAACTAGGTTGAAAAGCATTCTGTTTGAAGTTAACATTCGTTTTTAAGGTTTTCCTCATTTT--TTATCCGTAGGAAGCCATGAGTATCCAAAACTTGCTCCACACCAT--GAACCTCTCAGAAATGTAACCCTAAAGAATACATATGTCACAA-GGATAATATTGAAGGAAAGCAAAGTAATACTCTCTTTATC-TTGACTGGACTAAGCCCCAAACATGGCTAATATATACACTAATTTAATTAATAATGCAAAAATAAaaatggttattgaataccagtgttgtgacacatac-catactacattctgagtg-tattaaattgatatgaaaacagatatgttcatcgtcttcacagactttacattctagtaggaagaaaaatgcatatacaaaatagttccacaaatatataataacaaactctgaagaatttataaaggaaatgaacaaggtaaCAC--ATAACCATTGCACAGGAATTAAGCA---GTTGGTGGAGATTAGAGGTGGCTTGAACAAATGTA---TGAGATGAAAT-AGATATTGTATAGTATGTAAAG a score=11246 s hg19.chr6_ssto_hap7 4154399 217 + 4928567 GAACCAGAGGAAGCTCTGCCGTTTGACCTGTG----TCCTCC--ACAAGAAACAAACTTCCCCT-ACACCACTCTACTGTGAGGAGGCTCTGGAGGCTGAGGTGCTCCACATGGCTGGTGTAGACATCTGCACACT-GGAAGTCATTTCCAGCATCAGAAGGATCTGGAAAACCCAGTCCTCCTTCCTAATAAGAGGGATGAGCACG---CTGGCTGGCAGCATCCTG s canFam2.chr12 5310747 226 + 75515492 GGGCTAGAGGAAGCTCTGCCCTCTG-TCTGTGGGGCTCATCATGACAGGAAACAAACTTCTCCTTACGCCACTGCACTGTGATGGGGCTCTGGAGGCTGGCGTGCTCCACATGGCAAGTGTAGACATCTCCTCGCTGGGGAGTCATCTCCAGCATCACAAGGATCTGGAAGGTCCAGTCCCCATTCCTAATAAGTGGAGTGGACACGACACCAGCTGTCTGC-TCCTG a score=9054 s hg19.chr6_ssto_hap7 4154667 270 + 4928567 TCAGAATCTTTCCCCAAATTATTAAAACTCTGGTAGACACTTCAGAAACATATACAACAAAGacagacacacacacacgcacgtacacacactcacacgaagag-agagatgagataaggtgtgaggtgataagagagatgcagaaaataaagaga----tgcaaaaagaaaaagaga--aagaaatgcagataaatagtgacaaagg----attacaaacatagagaaa----ggcaacaatgcagtgaaagagacacaagaagggaACAAAGACAAAACTGGA s canFam2.chr12 5306981 263 + 75515492 TCAGAATCTTTCCTAAAATTGTTCAAATTTCAGTAGATACTGTAGAAACACA--CAACAAAAA-AGAGACACATGCACACA-----------------GAAAAGCAAAGATAAGGTAAGATGagagacaatgagagagatgcagacagtagagagagagatgcaaaaagaaacagagataaggggatctagataaataatggcaaaggtgcagatagaaatagaaagagacagaggcagagatgctatgaaagagtgagagacat--aacagagacagagaTGCa a score=55517 s hg19.chr6_ssto_hap7 4154939 1527 + 4928567 GAGACACACAGAAAGAACTACA--------CAGGGACAAAGAGACACACGGAGAGGAGAGGAGGATGCACAGATGAAACTATAACAGAAAGAGAAGAGAGATGAAGATCTCATTGAATATCTGGAACTAGTCACTTCTGAAACCAAC-----------ATTCCTTGTAACATGAATCAAATATCTTTGGGTTGGGTGTCTATCATTTGGAACCAAAAATAGTACTTTCATTGCTGGTTATGCTTTCTTAAAAATAAAAATTAGTCTTGATTGATGTGACTTGCCAGCCAGAATATATTTGAAACATCAGTCACTATAGTTGTC-----------------------------CCCAAACAATTCCACCAT--GCTTACTTAGACAACACTCGCCAAACCAGAAGAGAGGCTGGGATGTCCTAAGGCCATTGCACTGAACATCAATATTAAAGAACCATGAATGATGTGATGACTGAATTGATTTTCTACCTCC------TCTGCCTACCCTT-ACTTTGCACCCCAAGATGCTTTCAGTGTCTTTTCAAAGTACAACCCTCTTTCTAGCCACGGTTTGGCTGGGTCACCTCAAGGTATGTTCCTT-CACTTGGCAGTGGTTTCCTACCTCTGCTTAGTTAAGGAAGTTCCGAATACAGATAACTCAGAATCAGGTTTAATTATGGGAAAAAGCACTAAAGTCAGGTAAATGATTTTGTTTGTCATGCTTCTCTTGACAGGTCTGTGGGGGGAGAATGGAAACAGAGATGCCCCTTGGGGCCTGAGTAGACACAGCTTGCAGTGCACAGGCAGAGGCTCTGGGTCAGTGCAGGAAGCAGAGTCACCACCAGTGCCTTGGGATGGGGATCACAGAAGGTGACCTGTGGCTGCATGAGCCACTGTAGGACTCTGACCTCAGTGGGACAGGGTGACACAGGCAGCTAGGAATTCTGGGCAGGGGCAGGTGGGCATTACAGAAGAGTGATGACCAATCCCAGACAAAAGTCCTCAGGAGTCAGTGCAGGAGTCCTGGAGAAGAGAGACGAGGCATGATCAGCACAGGGTACCCTGAGGGACACACCCTCTCCCCTAGTCCTCAGTTCCCTCTGTAGCATCAAACAGAGGATGCTGAGGTCCAGGGCATATCATCATCACGTTCCCCAATATCTGTGTAAAGGTAAAATCAGCTCATGAGGACACAGAACTTCAGCTTGATGCAGATATGTGG-AGGTGGGGGAACAGCAGTTACCCTTCTGGGTAATATGAAGA-GT-TTGATTTTTTTAGTAAATTGGGTGACACTTCATCTC--CACCACTAGCAGCCTCTTTTAGTCACTGAAAATGCCTACAGGCAGTAGCTAACAAAATGTGGCACAAAGTGGGCATCACCCTACTATCTCACATTCAAGATGTGGCTCTGTCCCCACATTTCACAAAAAGATGCCACCAAAGTTAAGGCCTGGTTCTAGGAAACAATCTCTGGAGATTCGTAGA--AACTGG-CAAACTTTTCCCCTAAGTCTTAACCCTCATAGCAGCAAACAGGCCATGAACAGAGACCACTGTGCCCTGGAACACTCCGCTCATGCTCt s canFam2.chr12 5308099 1463 + 75515492 AAGATGTAGAGAAAAAACTAAAGGAAATATAAGGGACAAGGAGAGACACATAAAA---AGAAAGGTGCACACATGGAGATATAATGAAAAAAAGAGAGAGATGAACATCTCATCAAATGTCTGGATCTAGTAACATCTGAAATCAACTTGACCTCAGACTTCTTTGTAACATGAACAGAGTAAACTTGACTTGGGTATCTATCATGTGAAACCAAAAATAGTACTTATATTGCTAGTTATACTTTTTCAAAAATAAAAATGGACCTTGATCAGTG-----------CCAAGACCTATTTGAAAT----GTCACTGTGGTTTTCAGAGACACCGCGGGCCACTATTACCCACGCCAGGATACTTCCACTGTAAGCTTATATACACAATACTCTGCAAACCTGAAGAAAGGCCAGCACCTCCTTAGGCCATTGCACTGAACA---ATACTCAATATCCAGAAAGGACGTGACTATTGAATTGATTTTCCATCTCCATCTCCCCCGCCTGCTCTTCATTTGGCACCCCCAGATGCCTCTGGTCTCCCTTCAAGGAGCAA---------------------------------------TATGACCCTTTCATTCTGCACTGGTTTCCTGCCTCCACCCAGTTAAGAAGACTCAGGGTACAGAGAACTCATAATCACATTTAATTATGATAAAA-TCTCTATCTTCAGGTAAATGGCTTCAAT----GTGCTTCTCTTGCACAATCTGTGAAGGAAGAATGGAAACAGGAAAATCCCTTGGGGCCTGAGTATATCCTG-TAGCAGGGAACACACAG---------GTCAATGCAGGAAGCAGAATCACACCCAGATCCTCAAGA------------------------GTCCTCA-GAGTCA-TGTAGGACTCTGATCTATGTGGGGGACAGTCTGTCAGGCAGCTGGGAATTCTGGGCAGGA-CAGACGGACACTACAAAGGATGGA------ATCTCCGGTA----TCCTCAGGCATCAGTGCAGGAGCCCTGTAGAAAAGAGA------GTGATCAGCAGAGGAGACTCTGACAGATGAGCCCTCTCCCCTCCTCTCAGGG--CCACTGCAGCACCA----GAGAAAACTGAGGGCCAGGGCAGGCAGTCATCACCTCCCCCAATATTTCTGTAAAGGTGAAACCAACTTAAGAGAACATGGCACTCCAGCTGCACACAGATGTGTGGGAGGCAGTGAAGCAGCTCTTGTCCTTTAAGGGGATATAAAAACGTGTCAATCTTTTTAGTAAATATAATAACTCACCATCTTTGCACCACTAGTGGCCTTTCACA-----TGTAAATTCACACAGGCAGCAGCCACCAACACATAACACAAAGTGGGCATCATCCTGGTGTCTAACACCCAAGATGTGGCTCTGGTTCCGAGTTTCACAGACAGATAGCACCAACGTTATGGCTTGATTCCAGGGAACAA-CTCTGGATCTGCCTACACAAACTGGGCAATCTTCCCCCCTAACTCTTGATCTCTGTAGCAGGGAATAGGCCATGAACTGAGACCATTGTGCCCAGGTACACTCACCTCATGCTCT a score=39796 s hg19.chr6_ssto_hap7 4156670 936 + 4928567 TCCCTCTTATGCCTGTGCCCTCTCCCCTGACTGGATCATGGCTGAAATATTACCTGCTGGTGGAGGCCCTCGAGGTCCTACAAAAGGAAGTTATACAGAGAAA-----GGTCTTGTTAAACAAACAACCACTATCTTACCCCAAAGGAAAATGACACATGTAGTTTAATTGGGGTTATATCCTCTTCCCTCCCATGTTCTTTAAGTCCTTAAGCACCCTAAGTTAAAATCCCCCAAAACAAAGGAAATTGTCACTAGAAGACAAGGAGGCCGAGGCTCTGACCCTCATAATGGAGGAAGCTTTTAGAAAGGAGCCAGTGAGACGATGATGAACGGTAAGGACGCCCTGGAATAAGCTCTATCAGTCAGCTCTG--GCAGCGCTACCATTCACCCAGTAAAATCAGATTCCAATGCCTCCTCCAATCTTGTCCTGTCTCCTCGCAC-------------TTCCTCTCAGGGTAAGGAGGAAAGAGCTACATCTAGAGACAGA----ACCTCTCTGAAT-------------------------------------------------------------------------------AGAGGGTCTGGGTCACAGCTCATCTTCCCCATTTCCCCCTTGGGTTCCTCACCTTTCTGACCCCTGTGACGGATGATAAGGCCCAGCCCGAGGAAGATCAGCCCCAGCACGAAGCCTCCAATGCCACTCAGCATCTTGCTCTGGGCAGATTCAGACTGAGCCCCTAAGGAGCAGAAC-TGAGTGTGAGTGTTTGTCCCCACACCCCATAATGTCCTT-----------------------GGTACAGGAGGTGGAGATGTCAGGGGACACTAGTTCTCCAGTCTGACCACCC-TAGGGAAGAGAAAGACCAGCCAGTAGGTCTTTGGACACAATAGGTGGGTGAGGGAGAGGAAGAAG-CACACCCCTGCCCCTCAGGACTTCATCCATAACCTTAAACCCTAAGGCCCCAGTCACCAGCCCTA--AGTCAGTCTCTCATAGCTGTCAGAGCTG-GTTCTGGGGCTTTAGTA s canFam2.chr12 5309562 1045 + 75515492 TCCCCCTTTCACCCGTCCCTGCAACCCC-ACTGAATCAGAGCAGAAATAGTACCTGCCGGTGGAGACCCCCGAGATCCTACAAAAGGAAGTGATACAGAAAAAAAAAAGGTCTCAT-AAATAGCCACCTTCTCCCTCACCCCAAATGGAGGTGAAATAAGCAACTTAATTGAATTT-TACTTTCTCCCCACTCATCCACTCCAAGACCTTAACTGCCCTAAGCTAAAATCCCCCAAAATCAATGACACTGTCACTAGAAGGAAGGGAAGCAGATGCTCTGACCCTCTTACAGAAAGAAACTTTCAGAAAGGAGCCAGGGAGCCAATGATGAACTATAAGGAAGCCCTAGAATATGCTCCACCTGTTACCTCTGTGGTAGGGCTCCTTTTCAACCAATAAA-TCAGATTCCAGAGTCTCCCCCTAGGTGGTTCCGTCTCTTTCCACCACCCCAGCCTCTTTCCTTTCAGAGTCAGAAGGAAAGAGCTA-ATCTAGAGACAGAGCCAACCTCCCCCCCCCCCCCCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCAGGCATAGCCCATCTCCCTCATTTCCCCA--GAATGCCTTACCTTTCTGGCTCCTGTGACGGATGATAAGGCCAAGCCCAAGGAAGATCAGCCCCAGCACGAAGCCACCAATGCCACTCAGCATCTTGCTCTGGGCAGATTCAGACTGTGGCCCTGGGGAGCAGAGCCTGAGAGTCAGAGTT-GTCCCCACACCCCACAGGCTCCCTTTGGGAAGCCTGAAGTCCAGTCAGGTACAGGACGTGGAAGTACTGGGTGA-------------ACCTGACCACCCCTAGGAGAGGGAAGGACCCACCATTAGATCCTTGCACACAGTGGGTATGTGGGGGGAAGGAGGGAGGCTGAAACCTGCTCCTCCAGACA-CATCCATAACCTCAAACACCAAGGTCCCAGTCACCAGCCAGGGCAGTAAACCCTTCAGAGCTA-CAGGGCTGCGTTGTGGGGCCAAGGTA a score=41938 s hg19.chr6_ssto_hap7 4158085 623 + 4928567 TGGAAAGTGATCTCCCTGGTATCTGGAAAGACAAAGAGATCAGGATTCATCTGATGTGCTTGCCATGGGGCAACAGGTGCTCTAGTCTCCTGTGATTCCCAGCTCAGTAGTGATGTCAGGGACAAGAGATGGGATGGGAAGGATCAGCGGGAGCTCTGCCCTTTGTCTTGTGGGGCCCACAGTAAAAGGAAACCAGTTTCCCCTTACGCCACTCCACGGTGATGGGGCTCTGGAGGCTGGGGTGCTCCACTTGGCAGGTGTAGATGTCTCCACGCTGGGGAGTTATTTCCAGCATCACCAGAATCTGGAAGGTCCAGTCACCATTCCTAATGAGGGAGGTGGACACAACACCGGCTGTCTCCTCCTGGTCATTCCGAAACCACCGGACTTTGATCTGGGCTGGATAGAAATCTGTCACCGAGCAGACCAGCAGGTTGTGGTGGTTGAGGGCCTCTGTCCTGGATGGGGAGATGGTCACTGTGGGCTCCACTGAGGGCAGTAACAGACAGGGAAAGATATAGGAGTGAGATGTGAGACCACACAGCACGCCTGCT--GTGAGGAAGGTCCCTCCTTGGAACCAGAATAGAAAGATACCTGGAGTCCAAGTCTTGGATTAAGGttcc s canFam2.chr12 5310607 619 + 75515492 TGGAGAATGATCTCTCTAGTATCTAGAAAGACCACGAGATCAAGATTCTCCTGATGCCCCTGCCGTGGGACAAGAGGTACTCTAATCTCCTGTGATTTCCACCTCAGTAGTGACATCAAGGATAACAAATAGAATGGGATGGGCTAGAGGAAGCTCTGCCCTCTGTCT-GTGGGGCTCATCATGACAGGAAACAAACTTCTCCTTACGCCACTGCACTGTGATGGGGCTCTGGAGGCTGGCGTGCTCCACATGGCAAGTGTAGACATCTCCTCGCTGGGGAGTCATCTCCAGCATCACAAGGATCTGGAAGGTCCAGTCCCCATTCCTAATAAGTGGAGTGGACACGACACCAGCTGTCTGCTCCTGGTCATTCCGAAACCACCGGACTTTGATCTGGCCTGGATAGAAATCTGTCACTGAGCAGACCAGCAGATTGTGGTGGTTCAGAACCTCTGTCCTGGACGGGGAGATGGTCACTGTCGGTTCCACTGAGGGGAGTAACAGACAAGAAAAGAC-----AATGAGATGTGAGACTACACAGCAAGTCTCCCCATGGAGAAAAGTCCTCCCTtggtaccagcatggaaagatccctggattccaagtcttggatttggatctc a score=11082 s hg19.chr6_ssto_hap7 4159900 299 + 4928567 GATATATAAAGTGGCAATGCTAATCTCTAATGCACA-----GGTAACTGTGCTATTAAATGACATAACTTAGATGGTGTTTGCTAAGGCAATTGTCTAGAAATAAGTGCTCACTAAGTGGGTAAAATTGACGTTCAGAA----TGTTTATGCCTGAAGTG-GATAGTGATG---GGGGGAG--------GGAGAAA-------------ATCTACTCCAAAAGCAACCTGAAACTATTTTTATTCAATAATTTAGTGGCTTCAATCTATGTATTCCAAAGCTTCTGCTCTTTTCATTGTGCCATTTGTTCAGCTTTTCTAAGAAATTAAAACT s canFam2.chr12 5311643 329 + 75515492 GATAGATAAAGTGGT--TGCTAATCCCTAACATGCAAAGTAGTTAGTTTTGAAATTAAATGACATAATATAGACAGTGTGTGGTAAGGTATTTGTCTAGAACAAGGTATTGATTAAATGGCTACAATTAACTTTCAGAAAGAGTGTCTACCCCTGAAGTGAGATGATGATGCCCTGAGGAGGTGATCCAGGAGGAACAGGATATGCAGGGCTTAGGCCAAAAGAAACCTGAGACAATTCTTATTCAATAA--TAATAGCATCAGTTAATTGACTCCAAAACTTCAGCTCTTCCTAGTCTAAAATTAGTTGATATTTTCTAAGAAATTAAAATT a score=63662 s hg19.chr6_ssto_hap7 4160199 2291 + 4928567 GCCTTATAACACCATTCAAGCGTTGTTTTTATTTTCAGCAAACACCTTTTTCCCCAGACTGCATTCACAAACCTTAC---------TAAGATCCAAGTCAATAAG---AGTTTACAGCATTAAGCAAAATAATAGAAAATAATTGATAAAGTCCATCTTTAAGGCTCTATTTATCCTCTGCTTTCCCTTGAGCCTAAGTGGATGGGCAGCTGAGTACATTTattcattaatttaacagaagatcattgagctcataccacatgccggtccacgagtcaggtactaggcatgcaatgattaaaacac--tctcacctcaaagagctccgccatgaatgagagccgtttaagaaaacagaattacgatgaataataatttgaagccaaaagttaaaatatcttatttcacaactgtaattgctggatgccctgcgcgc-agttgtgga---gcagccctaactccaccaggccaagcctgaagcttcctgcggcgcgagctgtgcaagtgggccttgctgggtggggcagtgctag----tggggcggacgggcaggggaagagggcgggcattcgggcagaaagaactgcttagcgaaggtaaggcacgaGGAGGCAAACG--CATAAGGCACAAGGCAAGAACATGCAGAGCAGAGGACAAGGCCGATGGACGGGGAGGCTGGGGACACACTGGGCAGCCTAACCCAACCCTGCAGGGAACTAAGGGATGCTTTTGTGCATCCCCCTGCTCTGC--------CCTAGATCCCCGCCCCTCCGATACTACCCCAGCCTCCAAATCCCCGCCACCTTCCTGTACCCTGGGATGGATCAGGGCTCGGTCCTTGAGGCCGCGCCGTCCTCGCCCCTCTGTGCGCAAGAGACTCGGGCCCCG------GCCAAGGGTGAGC--CCCGCGGAAGGACGACGA-----CGCTCACCTTGCCGCTGCAAGGTCGTGCGCAGCTCCGCCTCGTAGTTGTGTCTGCACACCTTGTCCACCGCGGCCCGCTCCTGCTCCAAGAAGTCCTTATAGTTGTTCCAGTCCTCGAT---GCTCCGCCCCAGCTCGGTCACCGCCTGGAACTCCCCAACGTCGCTGTCGAAGCGCCCGTACTCCTCGCGGTTATAGATGTATCTGGCCACACCGCGCACGCGCTCTGTCCCGTTGGTGAAGTAGCACATGCCCTTAAACTGGACCAAGAAATCCTCTGCGGAGAATCACGGCGGGTCAGTCAGGCCCCA---GCACGGCCCTAGCCCCAGCCCCCAGCCGGACCGCACCCTTCAGCCGCTGCCCTGACCCGGCCAGCAGCTGCGAAACCCGTCCACGCGAAATTGAGTTCTTGGCTGGGCCCGTGCCTCGTGCTC-CGGACCTGGGATCCTCGAGGCATCTCTGCCCCAGCCCTGCCCGCCCTC-TCTGAGGGCCTCGGGAATCTGCCTTCCTTTAGGGAGGTAAGAG-GGAAAGCCC----------------------------AGTCCCTGCCTGAGCCTGTGAACCAAG-TGAAGAGGGCAGTCGGACCGATTCAACATTGACCTCTGCTCTTAGATCAGGGCGTTCTCGTATGAAATCCCATTTTCCATGGAGCTCTTGGGAATCTCGGAGACAGA--GTTATCCACATAAATTTGAGAGTTCAAGGGAATAACGAGAAAGGTTCAGGAATTAAGCTTGTTCTCATCCTGATGTAAGTATTCTCTTGGTCCCTGGGCAAGAGACCAAGTAAACCCATGCCTGGATTTACTCTC--TTTCTGCTAT--ACCCGCCCAAGTGCCCTGTGAGGTTCACTCACTTCTGT---GTTAGAAAGGACCTACACCTCCGGAGTCCTAGAAGGAAACATTT-ATTCAtggaaagagcccaagcttttgaa-----ttctatagggtccaattaaactgagtcaatcaccagcttgggcaggttacttaacagaatatc-catatcacaagtataattacataaaaggaaaatcatgatacctacacatagga-tgttaggaggagtgagagaggatttatagaaagtact--gtcctgtgtctgaatggagtggtttctcaataTGTATTATTTCCCTTCTTTACTTCCTCCTTCCTATCATACTAAATTCAGTCCACCATCAACTCAGGTCCCTGAATCCCACTCAAGTCACCTTTTGCCCATAAATCAGTGAAACCCAAAGT-AAGACTCCCTGTCTGTGGTCATCCAGTCACCTTCCCTCA-GTACTAAGAGTTTGCCTCCACAAACTCTCCACTCG--AGTCAGTAG--TATAGACTCCTTTACCTCCAATACAGAGACTACAGACACCATTGCTGCCTTACATTTTCCCA---------------GTGCA---------------------------------GAAAAATCCTACTGTGTCTT s canFam2.chr12 5251495 2213 + 75515492 GCCTCACACCGCCTTTCACAAATAGTTTATATTTTTAGTTAACACTTTCTTCTT-----TGCATTCACAAATCCTAGGCTATTAAGTAAGATTCAAGTCACTAAGTTTACTTTAAAGCATTAAACAAAGCAGAAAAGAATAAT-AATAGGGTCCATTTTTAAGTCT-TATTTACTCTGCTATTTTTCTTGAGCCTAAGTGGATGTGCAGCTGAGTGCACTTACTCATTAATTTCAC-GAAGGT--TTGCACTCACACGGCTTGCCAGTCCCTGTGTCACACACTAGGCAGGCAAGGAT-AAGGCAGGGCCTCGCCTCAGAAATGTCCAGGCCCAGTGACAGCCATTAGGGAAAACAGAATTAAGATGAATAATAATTTGAA--CCAGAGTCAAAATTCGGCGTGTGACGACT-----------CTGCCTTGCTTACCAGGTGTGTGCATGCAGCTC------------ACTGAGCTTC---CCACCTGCAGCCCCAG--------------------GGACAGGTCACTGCAGGAGCCCGGGGCGG---GGCTGGGG---------------TGCTCAGGGGGCTCGGCTTAGGAAAGGTGGGGAGGGAGCAAGCAAGGGGTCTCAGGGCGCGACATGGGGGTGCGTGGAGTGGGGGCATGAGCCT-----CGGAAGCGCTG-----------------CTCCCCCCTCCCCGAACGGA---------------------CCCCCCATCTCTGCTGAGAAGGCAGAGGGCCGGGCTC-------AGTCCCCCAGC-TCTGGCCCCTCGC---------------------------------------TGGGGACGCGCCCT----GCCTCCCTGTGCGCACCTGGGCCGGGTCCCGCGAGGGGACCTGGGTGGGGAGCCCGCGG--GGGCGAGGAGGGTGCGCTCACCTCGCCGCTGCAACGTGTAGAGCTCTTCCACCCCGTAGTTGTGTCTGCACACCGTGTCCACCGTTGCCCGCTCCTGCTCCAAGATCTCCTTCTGCCCGTTCCAGTACTCAGCCGAGGGCCGCCCGAGCTCCGTGACCGCCCGGAACTCCCCCACGTCGCTGTCGAAGCGCACGAACTCCTCCCGGTTATAGATGTATTTAGCCAGAAACCGCACCCGCTCCGTCCCGTTGGTGAAATAGCACTCGGCCTTACACTGGTACACGAAATCCTCTGCGGGGAGACA-GCCGGGCCAGTGAGGCCTCCACCGCTCAGCCCAAGCAGCGGCCACCGCCCTGGCAGGCCTCTGGGGCAGC------------GCCAGGGCCCGAGAAACCTG-------------AAGGCCT--------CCCGGCTCTGATGCCCGTCAACCCGG---CCCCGAGCACCCTCTCTCCCAGGCCTGCCCGCCCTCCTCGGAGAGCTTCCAGAG-CTGCCTTCATCCAGGGAAGGGAGGGAGGAAAGCCCCTCTGGAAGGGCAAGCCCTGGCACCCCTGAACCCGGCCTGAGCCTGACAACTGAGCTAAACAGGGCAGTCGGGTGGATTCTACATCCCGACTTGGACTGGGATCAGGACGTGCCCACAAGATACCCCATTTTCTTGTGGACTCC-AGGAACCTCAGAGGCAAATAAGTGTCCCCATTAGCACAAGAG------GGAATGTGCAGAAAGGTCCAG-AATTGAGCTCAACTTCCTCCTGACAAGCATATTCTACCGGCCCCCAG-CAAAAGGCCT-TTCTTCTAAGGCCTGGGTTAACTCTGAGTTTCTGTCGCCCACCCACCCCCCTGCAGTGTGAGGTTTGCTCACTCCTGCAGGGCTAGAAGGAACCCACACCTTCCAAGTCCTAGAAAGAAACATTTTATTCACAGAAAGAAC--AGGCTTTTCAAAAAGATAAAATAGATTCCAATTAACCTGTGCCAATGACCAGCTTGAGTAGGTTACTAAACAGAGTATTTCCTATCATAAGTATAATT-TGTAAAACGGAAGTCATAAAACCTACACATAGGGGTGTTAGGAAGATCCA-AGAGAACTTATAGTAAGATCCTAACCCTATCGCTGAA----ACGGTTCCTCAGTATGTGCTATTTCCCTTCTTTACTTTCTCCTTCCTC-----CTACATTCAGTCCACCATCATCTCAAGTCTCCGAATGCCACACAAGTTACTCTCTGACCATAAACTAGTGAGACTTGAAGTTAAGACTCCCTGTCTGTGGCCACCCAGTCAGCGTCACTCATACACCAAGAGTTCATGCCCATGTGCACTCCACTCAGAATCCAGTAGAACATAGAGTCCTTTGTACCAAAGACTAAGATGACAGAGACCGTTGCTGCCCTACATTTCCCCAACATACAATCCCACAGTGCATAGCCTAGACAAAGTCTTGGGGGACCCAGAAATAAAAAATCCTACTGTGTCTT a score=3077 s hg19.chr6_ssto_hap7 4162533 61 + 4928567 CCATGGTCATTTTGTCCTGTCACAGGTAGTGAATGCACACTTTGTCTCCTCTTTCCTCTCT s canFam2.chr12 5253740 61 + 75515492 CCAATGTCACTTTGTCCTGTCAGTGGTTGCAGATGCACACTTTGTTTCCTCTACCCCATTA a score=51189 s hg19.chr6_ssto_hap7 4162653 985 + 4928567 AAGGTGGAAATAAAAATGCAACATAGCTCTATTTCCCAAAAAGAATAAATGGTGATAAAAGACTGTGTTCTGAGATCATGGAGATCACCATCCCCCATACTCCAACCCAAGG-------AGAGCCTGTTCCC-ACAGTGGTGGCTCTCGAGAGCAGCTGCCCTGCACTTACTGGGAAAGTCTCTGGCCTCAGCCACTGGGGTGCTCAGCATCACCAGCATCACGGTCACAGCTGCTGCCCAAAAGCCTCCAGGGATCTGCAGAGCCATCTTCCAAGACGTAAGTGAG-ACCAAGGAAAAAGCAGTGGTAGTCAACACAGCTCAAACCTAATGGATCTTATGTACCTGCCGGAAAGAATAAAAACCTCTGGATGTTTCCATGTGTGGTAGGATTGGGGAGTCCCTAGGAAAGGAACCAATCAGCACTGGAGCTGAAGGACCTCATCTGCCTCTGGGCAGACGTTTTTCTGTGAAGATTCTCACTCCAATGCCTGGCACTGTTTCTTCTTCAAATTGCACTAGATGAACATTTGAGGTGAAGATTTCT-------GAATAGCTGAAGATTGAATGGCTTAGGGGTTTTAAGAAGCAAAAGACAAATGTGATTCAAGAGTAGACATCT---TACAACCT---ATT-----GTTCTTACACTTGGGATTTTTAGTAGGGCAAATTAAGTGAGGATCATATTTCAGGGAACAGAAA---ATTGTCACAGAAATGTTCACTTCTA-----TTAGACACTCTGAAGAGCCTTAAGTTTTGGTGAGAAGAGCAAAGTTCTTAGAAGGAAATGATGGTGagttgcagttctaccactaatgtgctttatgagagtcaacaaattactgaactccttttcacccccaggcttctctttgcaaaatgtggatcatgttttatgcattttacatctagatcttcacatataaaaatttaacattaatatgactagtttaatattacaaaagcctcctccactgttatgtgt----------aactatcaggctaataggagg s canFam2.chr12 5253846 1006 + 75515492 GAGGTGGACATGAGAATGTCACAGAGCTCTCTTCCCCAAAGAGAGGAAACTGTGATAAAAGTCTATATTCTGAGATCATAGA-------ACCTTCCACACTCCCACCAAAAGGTCCTTCAGAGCCTGTTCCCCAGAGCAGTGGCCCTGGGGAGCAGGTGTCCTGCACTTACGTGGAGAGTCTCTGCCCTCAGCCACTGGGATGCTCAGCACCACCAGGATCATCATCACAGCTGCTGTCCAGAAGCCTCGGGGGATGCACAGAGTCATCTTCCCAGACATAACTGAGAACAAAGGAAAAAGT--TGGTAGTCAACACAGCTCCTACCTGGTGGCTCTGAAGTACTCACTTCAAAGAATAAAAATCTGTAAAAGCTTCCATCCATAGTAGGATTGGAGAGTTCCTAGGGAGGGAACCAATCAGCACCGGAGCTGAAGTACCTCACCTGTCTCCGGGCAGACATTCGT-TATGAAGGTTCTCAGTCCAGTGCCTGGCGCTGTGTCTTCATCAGATTACACTAGATGAACACTTGAGGTGACGATTTTCTCCTATAGAAGACCTAAAGATTGAATGCCTTAGGGG-TTTAAGAAACTGAACAAAAA-ATGACTCGAGAGTAGACATCTTTGTGCAATTTTGGATTATTTAGTTCTTATACCTTTGGTTTTTAGT------AAATAAGTG-GGATCCTATTTCAGGGAAGAGAAAATTATTGTCACAGAGTTGTTCACTTCTATTGTCTTAGACACTCTGAGGAGCCTTCAGTCACGCtgggaagagcatagttcttaggaggaaatggttttgaattgcaattttaccactaataggctttatgagag----caaattactgagcctctttttg-cctcaggcttctcttggtaaaatgtggatcacgttgcctgcattgtatatccaggtcattatatatacgaacttaagagtaataggacttgtttaatattgcaaagtgttcctcagctgccacatgttaactgttgggaataccaggttaatatgcgg a score=30652 s hg19.chr6_ssto_hap7 4163638 816 + 4928567 aacaagaaaaaaaaaagttgacacccagccctactggcaagtgattctttattatgcaagaaggtattgcattcatgctcttcgagtgaaagtattt-----gttgacttttctcttgtaagttcttcagctgcttaaatcctccctgaaccatgaaacaggtgcatctgatatgagcaaaggcacaatacacaaat-tttacagtattcagacacagtcacatttagttttgaagatagagagcaaaagctgtgaagaagaatttcctgggggctgaatcgtattaatgatggagcaaatgtttagagttaca-----------------ggtcatattgggccagccctaaa-catcaaatccaaaatggcagaggtaccaatgtgtttttat---aaataaatttCTTACTTATCAGGCTTACGTTGCCCATGGCTAGGGATAGTACT-AATGGTTATAAAGCAATTAAAACAATGCCTGACAAACATTACTGGTAATCCTAACCAAGACAATAAATATCTCCACCTCTCTTCTTGTCTCCCTTCCTCCCA-CTCTTCCCTGTAT----------ATTAGTAAAGTAGAAGATAGAGAGCATCTAAAAGCAGAATAT-----GTTTACCAGGTAAAAAGAAACAGGGAAGAGACGGTAGCAAGAGGTTTGCAATAGTGGCACATGAAAGCATTGAGCCACTCTAATATTCTGTATTATTCTGTGCATAGATTTAGATCACCTGAGACTGGGAACGTTGTTACTGGGCTTCTAGCAGCAGTGGTGTACTCAGGATCAGGGTAACCCCCAGTCTAAGGAGGGTCTCCACTGGTGCGATGGAAGCATAAAGGAGGAACAT s canFam2.chr12 5255052 782 + 75515492 aacaaggaaaaaaagtggtgacacccagccctgtgggcaagtgattcttcattatgcaaggatcttttacatttgtgct-tttgactgaaagtatttgaaaagtcgagttcacttttat--------------------------------------gcaggttcctctgatatcagcaaagatgcaatccatgaacattcccagcattcacacaaaatcacctttcatttcaaggacagagagcaaaagatgtggagaagcattttctgggtcctgaatgatgttaatgaaggagcagatg-ttagagtcacacactgtgtatagatgtggcacttactgtgccagcccaaagttatcaaacctcgaatggcagaagtatcgatatgtttttatagcaaatctatTATTTATTTATCAGGCTCCTCTTGCCCATGACTAGCGTCAGTGCTAAATGGTTATAGAGCAATTAGAACAACGTGTGGCAAATATTA---------ATAAACAAAACAATAAGTATCTCCCTCCCTTTTCT------CCCTCCTCCCGTCTTTTTCCTGTATTTAGGTTTTCATTCATAAGAGAGGCCAT------TATCTGAAAGCCGAATAGAAGGAGTTTACCAGGTAAAAAGAAGTACAGCAAAGAC----ACAAGAAGTTTCCACTAGTGGCACATGAAAGCAATGAGTCATTCCAATATTTTAGATTA---GGTGGGT-GGTTCCAATCTCCTGAGACT-------TAGTCTCTGGGCTTTCACTAGCAGCGGTGTACTTAGGATCAGGGTAA-TGCTGGAATAAGGAGGGTTTCTA-TGGTGGCATAGAAGCAGAAAGAAGGAGCAT a score=8979 s hg19.chr6_ssto_hap7 4164454 229 + 4928567 CAAACTCAGACCTAGAACGGAACTGGGG-GCAAGAAAGAATAGGCAGAGAGGGACCTGAAGATGCCCTCAATGTCCTCTCAGTCCCCACCTCAGCGTCCCTCAGAATA----GAGGCCTCTGGCCCACCCCTTCT-TCCTGTTCAAAGGGAGAAGCTTCCCTCAGGTTTATTCTGGGGCTGTGAGGCAAAGTCTACGTCAAACCTAGGGACTCCCCAGTCTC--ATGGGCCTCTTCA s canFam2.chr12 5314804 232 + 75515492 CAAATGCAGAGCTGGAATAGAGTTAAGGAGCAAGGAAGAATGGTCAAAAGGGGACCTGGAAGGTACATTA--GTCCCTCCAACCCTCACCTCAG-GTCCCTCAGAATAAATAGAGAACTCTCTCTCCTCCCTTCTCTCTTGTCCTAAGGGGAAA--TTCTCTCCACTCCATTGTGGTGCTGTGTGGTAGAGGCCATGTCAGACCTGGGGATTCCCCAGTCTCTTACAGGCCTCTTCA a score=4880 s hg19.chr6_ssto_hap7 4165033 71 + 4928567 CACAGACTTTTCAACTAGCAACGAAAGTGTCAGCTTAGAGC-CATTTTCTGACTGGCTAAAACCTCATCTGA s canFam2.chr12 5315036 72 + 75515492 CACAGGCTTTTCAATGAGCAACAAAAGTGTCAGCTTAGAATGCTTTTTCTGATTCGCTAAAACCTCATCTGA a score=15474 s hg19.chr6_ssto_hap7 4165436 462 + 4928567 AAGGCTTTGGTTTGGGGCTTCTGCCAGTTGTGTCCCCC-TGATCCAGCC-------------TTCTCTACAGTTCTTTGCAATGTTCCTATCCCTGCTCCATTACTCAGGGCAGCCACTATTGGCCTGGCC--AGAGGAAGGCAACTCAGACAAGCATCCTGATTCTGAATGCCTCGCCCAAATCACCC-ACCCGGCCTCTGTGGGGACAGAGCGCTTAGGATGA-GACCACACGCACCCCATGTGGGAAGATGGG--ATAAAGACACTGCTGTTATTATGGGTCAAGGTTACACTAGGGAGACTCTCCCCAGGGCACATTGTCTCTTCTTTCAGGGCAGAAAA---AGGTTGTGGACTCCTTCTTTGTGGAATCAAGGGAGAAATCATCTTCCCTGGTCAGCATCTCTTAGAATCTGTGCCTGGTCAGTGCAGTTGAATG------TAAACACAGGAGTCATCCTGTCACCAGAAGGGTTATCCAGGACT s canFam2.chr12 5315108 469 + 75515492 AAGGCTCTAGCTCAGG-CTTCTGTCAGCTGCTTCCCCCCTGAGACAGTCAACATTCTCTACATTTTCTAGAGCTCTCTGTGCTACACATAGCT-TATCCCATTACTCAGGGTAGCCACTGCTGGCCTGGCCTGAGAGGAAGGCAACTCAGACA-----CCCGATTCAGG--GGCTTACCTGAGGTACCCTGCTGGGCCCCTGTGGATGTGG-GCACTTAGGATGAAGGCAATGTGTATCCCATGTGGGTAGACAAGCAATCAAGA-AGTATTCATGAAATAGGT-AGGGTTATAATAAAGAGACTCACCCTAGAGGACATACTCTGTTGCCTCAGGAAGGAAAATAAAAGCTATAGACTCTTTCTTTGTGG----------GCATTCATCATTCCTGGTCAGCATCTCTTGGAATCTGTGCTTGGTCAGTGGAGATAATTGTGATATTAATAATAATAATCACCTTGTGACCAGAATGACCATCCAGGACT a score=1180 s hg19.chr6_ssto_hap7 4165898 41 + 4928567 CTGTCCTGCAATTACTTCCAGAATCAAGAAACACTGTAGAG s canFam2.chr12 5256616 40 + 75515492 CTAG-ATACATTTAATTCAGGAATTAAAAAATAATGTAGGG a score=11683 s hg19.chr6_ssto_hap7 4165939 272 + 4928567 TCAGAAAGGTTCTGTGGCCTCCTTAATGCCAGTGGTAACATAAttagaaatacggccccagaatatcattttcc-tttaataaaaatttatcaagtaattatctccaaatttttcaaaa-ccttgtgaagctac---ttacat-------------------------atttctcttatatcaacttttaggtaaccggttacatgaatttttcatgacacatataaggtaggccttttctctttaaacagttatctctttaaaatGACAATTTAGAAA----GTCTGAAGAGAGAGTCTGTAGCA s canFam2.chr12 5256843 295 + 75515492 TCTGAAATATTCTGTGACTTCCTTAATGCCAGTAGTAATATAATTAGAAATACTGCCCCACAATATTATTTCCCTTTTAATAAAAATTTATCTAGCAATTATCCCTAAGTTTTTCCAAATCTTTGTAAAGGTACTCTTTACATCAACCCTTACATCCCAGAATATGGGATGTCCCTTACATCAACCCAAA-----------ATATGAATTTTCCATCACACATATGCAGTAGACCCCTGTTCTTAGCATAGTTATCTCTTTAAAATCACATCCTAGTAATCTGGTCAAGGAATGAAATCAGTAGCA a score=21219 s hg19.chr6_ssto_hap7 4171150 542 + 4928567 ATAGTCTTTTAGTGCTTCTATGCATGGTCATGTCTGTCAGTAGACACTAAAACAATCATAATTCAAGAA---CAGAGTAAATAGTAACATAGACCCTTCTGGAATAGTTGTCTCTGTCACCAAAACA------GAAAAACAAACTAGACTAAATTCAGAGGATGAGGGGAA--TCAAGAATGGCTTGTGAAGGAGGGA---AACAAATATTAGTTACAGTCATAATGACAACTATAATAGTAGACACTGTAGCAAATTTCACT-----------------AACTTTCTTGCCTTAATCTTCT---AGATCACAATTGATCA--CTCTTGTACCTCCCTTCTTGAGGAAAAATTAAAATGTGTTAATTTTCTCAGGAAAAAAAATGAAAG-GCACCATATTGGACTATGggagcttggaattctgaatcaccacctggagaaaagtgactcacaaatcttcaatatcctccttctgctacattagtgagttataaacttctactatatttcagccacaatacacattttagtctattt--------gttgcagcagtttggcctattctaattagtataAAAAGAAGA s canFam2.chr12 5325121 560 + 75515492 ATAATCTTTTATTATTT-TATGCATGGCAATAACTATCAATAGACACTAAAACAATCATGATCCAACAAAGGTGGAATATATAAGAGCATAGAGACTCCTGAAATAATATTTGCTATAACCAAAAGATTACTGGAAAAGCAATCTAGACCAAATTTAGAGGGTGTGGGGAGACTTGACAATGACTTATGAAGGAGAAAGATGATGAATATTAGTTACAATCACAAGGCCAGCTACAACAGTGGACAC--TAGCAAATTCCATTGCAATATAAAGCATTGCAACCATCATGCTTTAGTCTTCTAGGAGATCACACTTGATCAACTTCTTGAACC-----TCTTGCGGAAAAAT------------------TTAGGAAAAAATTTCACAGAAAACTATACTGAAGTTGagaagcctgggtccctgaattagcacctggaggagagttacccactagtcatcaaca-cctgctcttgttacactagtgagatatgaacttctactgtatttgagccattatacatctttgggtctatacatctttgggttacagcagtttggcctttcctaactaatataTGAAGAAAA a score=16268 s hg19.chr6_ssto_hap7 4171692 389 + 4928567 AAAAATAATCATAGAAAAAAATTAAATGAAGAATATAACAATTTTAATAGTTTCTCCTGACTTAGACTCACCTGAAATGATCCTCATTCTTTGTTTTAGGATTAGCA-GAGATGTAAGACAGAATTTCATGAAAATATTCAACCTGGTGGATGATGCCAAATTAGCAGTTAGCGTGTGTGCCTGGAATTCAAACCATACAAATCCTCCCTGCCCACCTCTCATCCTATCCTTTAGAGCA--------------------GAGCCTGTTTCTC----ATATATTGCC-CCCAAGTCTATATCAATCAAATTAATTTTTATTATCCTGAAAACA-CCTATAGAAAGACTAACATGTTGAAAGTTATATTTAAATATGGGCACTCTGCTTCATACTCTTTTGCCAATATTACTTCAAAA s canFam2.chr12 5326310 401 + 75515492 CAAAA--ATAATGGGGAAAATTTAAATTA-GAATATT----------TAATTTCCCATGGACCAGTCTCACATGAAATGATCCTCATTTTTTACCTTAGAATTATCATAAGCTGTAAAACAGGATTTTGTGAAAACATTCAAGTTGATG-ATGATGCTAAATTAGCAGCTAGGGTATGTGTCTAGACTTTAGACCATATCAATCCTCCCTGTACACCCTTCACCCCATTCTTCAAAGCATTCTTTCATGTTCAGAACATGGGCCTATCTTTCTTTGACATATTACCTCCTGATTTTATATTGATCAAATCAATTGTGATTATTTTGAAAGCATCTTATAGAAAGACTATCTTGTTGAATGTCATGTTCAATTCTGGGTACTCTGTCCTATGC-CTCGTACTGATATTACTTCAAAA a score=20396 s hg19.chr6_ssto_hap7 4172081 467 + 4928567 CTGTACAAACCTATATTCTTTGCATTTGTGAGAAATTATTATATTGTAGATAAGGCTAAAATATTTTGTGAATCAAAACATACTATAAAAAGTTGGAAAGAAAGACTTCATTTGGATGTAAATACATGAAAATAGCAGCCCAGACACTCAAGACAAGAGGAATAATAACTAAGTGACCACAAAGGAAATTTTTTATCACATGCCTGGCTGTTCCAGACAGGGAAGCTTGCTTTACCTGAAGGAAGTGGTCACTAGACCAGAATGTAACCAAATACAGGATTCTGCtttaaaaaaaaaaaaaaaaaaGATTCACAAAAGTCACGTTCAAGTTAAACCATTAAATACTTTCTTCTCCAACTAATGAG---AAGATGTGGGGCCTCATTAATTCTCTCTGGCAGATTAGGTCAATGAATCCATTCCAGAAAAAAAATTATTGAAAAGAGCAATAAATATACAAAATATCAAAG s canFam2.chr12 5259732 439 + 75515492 TTATATATACCTATATTCTTCATACTTGTGGCAAATTATTATGTTGTAGATCAGCCTAAAA-ATGTTGCAAATCAAAACTTACTATAAGAAGTTGGGAAGAAAGGCTTCAGTTGGAAGTGAATACATAAAACTAGCAGCCTGGACACTTAGCACAAGAGGAACAAAGACTGCGTGACT----------TTTTTTATCGCAAGCCTGGCTCATAGAGGGGGGGAGGGTTGCATTGGCTGAAGGAAGTGGTTACTAGAACAAGGCATAACCAAAGATGGAATGTTGCTTAAAAAAACA-------------TCACTGAGGCTGTGTTTGAGTTAAATCATTAAATAC-----TCTCCAGACAATGGGCCAGTGATGTGAGATAGCATCACTTGTCTCTGGCAGACCAAGCCACTAAGTCTGTTAGAG-AAAAAAATTACTTATAAGAGCAAAAAACATACAAAAC-TCAAAG a score=29704 s hg19.chr6_ssto_hap7 4182673 728 + 4928567 tttccttaaaatttgtttttt-acattaataaattgatatc--atttttcaaaattagtatttgcatgatatatcctttctgtcttttacactcaatctctgaaatgacttttatgctttaga-catatgtcttgtaaacagtataatctgaatttgtatttttgcattcaatttgtcaatctctgtcttttgatcacaagtcaagtctatttgcattttactgaaataaataacatatatggaccttt-atATTATCTCACATTTTTCATTTCGGTCTTTTCCATGATTTCAATGACTTTTTTCC--TGTTAGCCCATTTCTATAACCCATTCTAGCATGTGTA-------TCAGGCTG--GGATGGCAGGTGGATTCATTCTAACCTCTACCTTGAGATGTGTTTTCAGACTCTGTTAAGGTTTACGTTGCTCATTTCTGGCATC---CTTCACATAAGAATTACTGATCCAGGCCCAGCCATTTGTAGATTTTGAGACATTGTTCTGGCTGTCTGCATATGGCCTGTCTCTGGACTTAACATCCCATGTCCTCACTCAGACTACATAACTTTAGACCCACCCTATTACTATGGACTCCCTGTCTATTTGTATTTT--TTCAGCAAAACGTCTAAAA--GTAATTATCAATATTCTTGAAACATTAACTTGATAGA---------------------------TTCTTGTAAAATCACATAATCTATTGAAAATTATATGGGTGCTCTAAACTATACCCCCTGGATAATCTTACCT s canFam2.chr12 5336898 768 + 75515492 tttccttaaaatttattttttgactgtaatatatccataaccgattttatttacttagtacttgcataatagatgtttttcattttttgcactcaatctctgaaatagcctttatgtttttaatcata-gtctcataaataatatcacccaaatttatgtttttgtgatcaatctgtcaatctct----tttaatcacaggtttagtccatttgcactt-actgaaattaatgagatatccagaccttttataccaCCTCATGTTTCTCATTTCA-TTTTCTGCATGATTTTAATGGCTTGTTTTCACTATTCACTCATGTCTGGAATCCATGCTAGCATGTGTAGCAAGTCCCAGGCTACTGTCTGGGGGGTGGTTCTTTTTTGGTCTCTGCCCTGAGACATGTTTTCAGAATCTGTTTAAGTTTACATCGCTCATTTCTAGCTTTTTGCTTCATGTAGGAATTATTATTCTATACCCAGCCTTTTACAGATATTAAGATTCTGTCCTGCTTTCAT---TATAGCTTGTCTCTGGGCCCTAAACCCCTTGTTTGCATGAAGACTGCATGTCCTTAGATACCACATATTAATAGAGATTCTCTGATTGCTTTTATTTTCTTTTAAGAAAACTTCTAAAAAAGCAATTATCAATGTCCTTGAAACATTAACTTGAAAAAAAAAAAAAGAAACATTAACTTGATGTGTTGTTTTCAAATTAAGTAATCTACTGAAAACTATATGGGCTTTCCAAAATATACCTCCCTGATAATCCTGTTT a score=3922 s hg19.chr6_ssto_hap7 4183599 122 + 4928567 GAAAAAAATAAACTAGATTACAAAAGAGAGGACTTACATACACTTAGTTCTTGCAGGAGGAAAGGAACTATCTAGACGTTGTTATTTTGTTCAAAATAAGTATAAGTACAAAAATCTGTGGT s canFam2.chr12 5337666 96 + 75515492 GAGGAAAGTAAACTAGGTTATGGGAGAGG------------ACTTAGCTCTTGCAGGAGGAAAGGAACTGTCT-GACATTG------------GAAAAAGTTGAAAGAC-AAAATTTGTGGT a score=24288 s hg19.chr6_ssto_hap7 4184999 642 + 4928567 TGGAGGAAAGGAATGGCATGAAGGGCTCTTGTTTTCATTAAAATACATCTTTATTGTTTAATCCTCAAACTATATACAGGTATCCTGATAAATTTAAAATACTGATTGCAAAATAAAATTTAATTCTTACTGAAATATCAAGAATGC-------------TGCAGATGGTGGCAGGATGCtcaatgtgaaaaaggatagtggcttgcattagaatgacagcagcgaagtttgtTTT----AAGCATGTAATTTTATAGTACCAATCTCTTATCTGTGAAAGCGT-----GTAAAAGACTGAGCTCTTCAGTTCTCAAACAAAAGCAGACTTTAACTCCTGCTCCAGT-CATGCTTCTTTGCTTCTCAAACACCCATAACCACATCTCAGATTGCATCATATTTTGAACACATGGAAGGAAGAGTAAGGGAAAAAAGAG-TGGCTGGGTTACCACCCTC----AAGAAATGC-TGATCCCT-------CAAATCTAGACCTGCCAAGGGGCCAGGAGAGAAGGGAAAGCAGCAGCTC-CCTTGAATTT-TTAAAGTGCAATGTCCCCACCTACTGGTGAAGATGACCCAGTTAACATCCCTACAGCTGTCA----------ATGTCTTCCTAGGACATTGACTTCTTCTAGTAGAATCAGTGTGCTTCAGCTCAGTTTTACACCAG---------AAGAT s canFam2.chr12 5350246 670 + 75515492 TGAAGAAAAAGGGAGACAAGAAGGGCTCCTGTTTT-ATTAAAATACATTGCTATTGTTTAATTTTAAAA---TGTAC---TCTTCTGataatttttaaatataaatt-taaaataaaaGATCACTCTTTATAAAGCATCAGGAATGAATGCATTAGATTACGCAGAAGATAAT-GAAAGCTCAATGTGAAAAAGAATAGCATCTTGCCCTGGA-----------GAGGTTTCTTTTTTTAAAGCATGCAATTTTATGGTAGTGATCTCTTACCTGTTAGAACGTAACGTGTAAAAGACTGAGCTCCTCAGTCTTCAGGCAAAAGCAAGCTTTAAGTTCCGCTCCATTTCATGCTTCCTTGTTTCTCAAATATCCAAAACCACATCTCAGGTTGCATCATATTTTGGAAACATAGAAGGAATGATCAGGGAAATAAGTGCTGGCTAGGCAGCCACCCTCTTGGAAAGAATGCATGGGCTTTCCGGGTCCAAATCTATGCA-GCTGAGAGG------GAGAAGGGAAAGCCACAGCTTGCCTTGGATTTCTTAAAGTGCAGAGTCTCCACCTGCTGGTATATGTGACCCAAATAATATACTTCTGGCTATCACTCTTCTAGGATGGTTTAGAGGGATCTTGAAT--TTCCAGTACAATCAATATGCTTCAGCATCTTTTTACATCAAAAGAAAAACAAGAg a score=14444 s hg19.chr6_ssto_hap7 4185641 312 + 4928567 AAACAAAATATAAATC-CAAGATTTTTGCAGTGCAGTGGAGGTCTCTGAGGGTGTTGCAATGAGAATTTTAA--------ACACAAAGCTAGTTTTAAAATAACACCATAATTAGCAGTCCCTTTCCCCAGCATCTATCTACTCCTCACAGCTTCTGCTCAGATTGTCTTCTCTCCAT----TGTCTCTTCCATCGCCCTGT-ACAAATCTCCTCTCTTACACTGCATTTCCTGCCCACACCCTGCTTCCCCATGCGTTAAGTTAGCAGCCTTTTTTCCCTCTTGTTGTTTTCTGCCTTCTGATATTTCAGATAAGAAATCTGTTT s canFam2.chr12 5351081 309 + 75515492 AAACAAGATATAAACCTCAACATTTTTGAAATGTTATTTAGTTCTCTGAGGGTATGGCAATGAGAGTTTCAAATCATGCCACAGAAGGCAAATTTTAAAGTAACACCCTTAATAGCAATCCCTTTCCCCAA----TATCCATTCCTCTTAGCTTCTGCTCAGATTTTCTTCTCTCTCCTTTGTGTCTCTTCCATCTCCCTATCCCAAACCAGCTCTCTTACACTGCCTTTTCTG-CAGCACCCAGCTTCC---TGCAT---------AACCTCCTTTTCTCTTAATTGCTTTCTGCCTTCTGATATTTCAGGTAAGAAATTTGCTT a score=5265 s hg19.chr6_ssto_hap7 4193477 270 + 4928567 ACTCTCATTGGTACTTCTTCCTCATC-TGTAGGTACCTGAGATGACTGTGTCCTCTAAAGCTTCTGTGATGCTAGATGCACCCAACATCATTTTCTATAATTGAGGATCGTAGCTTTCC-CCTGTGATCCTC------TGGCTGTATTGTGGGAAGATAGTCAAAAAATCATCTTTTAAAGT---------------AGGAAATAAACTTCTTTTTATAGAATCAG----CTCCCCTTCCT---CTGCGCTTGTGGTTTCCATTACTATAAAAGAGAGCACTGAAGTCCAAAGAAAGTAC s canFam2.chr12 5229161 297 + 75515492 ATTCATGTCAGTGCTGCTTCCTCACCGCAGAGGTTCCTGAGGTGACTGTGTTTTCCAAGTCTCCTGTGATGCTGGGTCAGCCCAACACCCTCATCTGT-CTCGTGGACAACATCTTTCCTCCTGTGATCAATGTCACGTGGTTGAAGAATAGGCACTCCGTCACAGAAGGGGTTTCTGAAACCAGCTTCCTTGCCAAAGGGGATCA--TTCCTTCTCAAAGATCAGTTACCTCACCTTCCTACCTTCTGCTGAGGATATTTATGACTGCAAAGTGGAGCACTGGGGCCTGGATGAGCCAC a score=3191 s hg19.chr6_ssto_hap7 4193914 175 + 4928567 TTCTGACCTCAACACCACCTTTTCCTACAGAATATGTGGC----ACCCGTATTTTGTCAGAGAAGACAAACG-TGTTGT-----TCCTCAGATTG---GTAGGATTCATGGGCATT----------TCATCCTCATAATATGAGG-TTGTATGCAGACAGTGCCTCCTGGTATCGAGAAGCCATGTGAGTTACACCACA s canFam2.chr12 5229711 195 + 75515492 TTCTGACTTTCACAACCTCATTTTC-ACAGAACCTGAGGTTCCAACCCCTA---TGTCAGAGCTGACAGAGACTGTGGTCTGTGCCCTGGGGTTGGCTGTGGGCCTTGTGGGCATCGTGATGGGCACCGTCTTCATTATCCAAGGCCTGCGCTCAGGTGGTACTTCCAGACATCAAGGACCTTTGTGAGCTGCACCCTA a score=18806 s hg19.chr6_ssto_hap7 4196713 573 + 4928567 TTAAGTTTCTGAATTTTTTCCATCTGGAATTTTATTTGATGATTAGTCTAGCATCGTAATGGTGTCCTTCGTGTTGACGTGAAAACCCAG-CCTTCCTTCAGTTCATTTCCCGTTTATTAGGGATGCAAAACTCCAGCCACAGATGACCTACGACTCTGACTCCTTCCCCACCTACTTTACCCTCCCCTCCCCCAGTACATTCTGGGGCTAAACCCTAAGAGGTACCCATGCATCGCTGGGCCGATGATGAAAATGAAGAAGTATTC-TGATGAAGCGAGACCCCGGAAGTGCAGCTTCAGGCAAAATCCTGAGCGAATTCTTTGCTGCCAGGACAGTCCATAGGATCTTACTCT--TAGAAATTACGTAAGCATGAGCAGTCAACGCTGAAAAGCAGAGAATGTGGTTTTCTGGCGGACTCCAGAGGGAGACCAGGAAATCCTCTCACTTACAATCCATCAAGAGTAGTTCCTCCAAATTGAGTACAAAGTCTCTAAAGGCCAGCAGAGACAAGTAAGGACTTGTAGTGA-----GCTGCAGCTCACCACCCGGATCAGAACATAAAAGACA--GGAGACCTC s canFam2.chr12 5369294 548 + 75515492 TTAAATTTCTTAACTTTTCCAAATGGTTTTTTTATTTTATGGTTAATCTAGAATCATGATGGTGTGTCTCATTTTGACAGGAAAACTCAGGTTTTTTTTCAGGTCATCCCTCATTTATTGAGAATTC-----TATAGACA-AGAAGGCCTGTGATTGCCTCTCCTGCCTTATCTTC--------CCCCTCCCACAGCACACTCTGGAGCCCAACCCTAAGAGATCACCACAATTCACTGGAACT-TGATGAAAACAAAGAAGTCTTCCTGAAGGAACTAGTGGGCACAAGTGCAGTATCAAGCCAAATTCTG---------TTAG------GAACAGATCATGGAATCTTACTCTCTTAGAAATCACATATGCACAATTGACCAATAATGAATTGCAGAAAATGTGCTTTTCTA-TGGACACCAGAGGGAGACCATGAAAGTCTTTCACTGACAATCTGTCAAAAATTATGCCTCCAAAATAAGGGCAAAACACTTAA----CAGTAGAGGCAAAGTAAGACTGAT-GTGATCTACACTGCTGCTTACCTCCTAAATCAGAATATAAAAGATACTGGAGACTCC a score=2333 s hg19.chr6_ssto_hap7 4199810 43 + 4928567 tatttgatgttttaaaccatgtc-atgtataactttttaaaaaa s canFam2.chr12 5371622 44 + 75515492 TACCTGATATTTTAAACCATGTCTATTTATAACTTTGTTTAAAA a score=1183 s hg19.chr6_ssto_hap7 4199853 64 + 4928567 aaaGataaaataattttaa-atattaaaata---ggaaaattttaaaaaGAAAAAAGACATt--------ttttct s canFam2.chr12 5371886 76 + 75515492 AAAGGTTAAATGAGCCCAATATATTAAAATACTTAGGGAAATATAGAGGGGGGGGGGACTTTCATTTCTATTTTCt a score=20553 s hg19.chr6_ssto_hap7 4200219 568 + 4928567 ATTTTTTATTTTCTAAAATGAAAATGTTGAT--ATTTAATTTTTAATCCCCTTC--AAAAAAGCAACTACTCTGTTTATGAGATTTATAGAGAATTCCATATAGTTAATACTAAATACAT-----------TCCTACATCAGAATTTGTTTAATACAAAATCAATTAT----TTAGGTTAAAATGTTAACACTCTTCCACTAAATTACCACTGCAATTGTGTAACTTCAAAATGCTCAGGATATTGTCAACAGAGGAAATAGAAATTGA-------TCTTCTAGCACAATAGTCAAACAAAATTGACTATACAAGATTTTGGATGCTTGTTACACTGTTGACTCAAAACAATTCTAAACAACTCAATGTACTTGATGGACAGAATGTACTAAGAAACCAACAAAAGCAATTCATTTCTT-----ACTTAGCTACATAAGCTAAGTAAGAAAATCGCAAATGCTGACATCAAAGGAAG-------------------CTTTCCAAGCATAGAAATAAACTCTGATAGATTATTTCAGATCCAGGATATTTGGAAAATAAATCAGAT--------TGCCTTTTTGGATAATTCCTAAAGAATCACACAATTATGACTTTTGAATCCTT s canFam2.chr12 5372146 603 + 75515492 CATTTCTATTTCCTAAGGTGAAAACTCTGATGCATTTCATTTTTAAACCCCTTTTTAAAAAAGTAAATACCGTACTTGTGAGATTCATAGAAAGTTGCatataattaatattaaatataCCTGAATATATGTTCTATATCAGAATTTGTCTGCTACACATTTAATTATGGTATTACATTAAA-TGTCAAAAATATCCTGCTAAATTATCGCTGCAGCTGTGTAACTTAAGAAAGTTTAGGAAATTGTCAGCAAAGGAAATGGAACCTGACTTCTCCTTTTCT-GTGCAACAAAAAAGCAGG-TGAAATATACAAGATTCTGAGTGTTCATCATACAATTAACTCAAAACAATTCTAA---------TGTCATT-------CTAATATACTAAGAAACTGGCAAATGTCAATCACTCTACTGGACAGTAAGCTATATAAGCTAAG----AAAATCACAAGTTCTGACAGCAGAAGAAAGCAAAAATTTAAAAAAAAACTTGTCAAGGATAGAAATAAGTGCAAATGGATCATTTGAGTTATAGAACATTTGGATAATAAATCAGATCCTTTTTTTTTTTTTTTGAATCATTCCTAAAGTTAAACCCCATTATAACTTTTGAGTGCTT a score=31780 s hg19.chr6_ssto_hap7 4200787 751 + 4928567 TATTAATGGAGGTTACAGCAGCCTAAATAATTTGAAAAGTGGGGTTGGCTCTCAAATAACATGGAGGGTTTGTTTTAGAGGAAACATGTAACACAACAGG--ACTCCAGAAGCACGTGCTTTAAGGTATAAGGACATGTACCCCTGGTGACAGAGGATGTATAAATATTGTGAGTCCAAATATATAGGCCACTTGTTTAAGAAAAAAAGACATTAGGAGTATAAAAAGGAATCAAATGTAAGTGCAAACTCATAATAAATCTAAACTACATGAGG-----CATAAAGCCTAAAT----------------------AAGTGCTTAAGTAGCTGAAATAGTATCACTTTATGTTGGAAACCTGAAAGGGACTAAATATATGACATAGAGTCCATATTTAAAAACTTCATGTAGGCATTAAATAGAAAGGATACAGCTCATTTGACAACCAGTAGAAAAGGCAGCTATTTAAAGAAGCGTAATCCAAGTTAATGATATACATATATGAGGTATTAGAATACGTaattcaatggccattcatgataaaatgctcagaaaa-tgcaaatagagaggaactgcctcaacttgataaagagcatctgcaaaaaaatctcacagctaaca----cagcggtgaaagact-gaaatttttcccccaaagatcgggaacaaagcaatgatgtccact--------------------------ctcgccatgcttattcaacatggcgttggaagttctagataatgtaatgggcgagaa----aaaaaaaaggcgtgcagatttcaaaggaagaaataaaaatg s canFam2.chr12 5375218 800 + 75515492 TATTAATGGAAATTATATCCACTTGAATAACCTTAAATGTAGGCTTGACCCTCAAAAAACATGGAGGGTTTGTCTTAAAGAAAGC--TCAACCCAATGGAACACTTCAGGAATAGATGGTACAATACATGACAAGACATACCCCAGATAATAAAGAA--CAAAAATACTGTGTATCCAAGTACACATACCACATACTTAAGAAAAAAAGGCTTTAGGAATATAAAAGGGAATCAAATGT--GTGC--ACTCATCACAAAACTAAATTGTATGAAGGAAAAAAAAAAAACTAAATTGTATGAGCCATAGACCACAAGAAGTGCTTATGTACCTGAAATAGTACCAATTTGTATTGAAAACCTGAAAGGAAGTAAATATATGAC--CGAGTCCATGTTC-AAAGCTGTATATAGGCATTAAATGGAAAGACTATAGCCCAACTGATAATCAGTAGAAAAGGTAGCTG-TAAGAAAAGTATAATCCAAGTTAATGAAGTACATATCTAGAGTACTAAGTTacatagttcagaatccatttaggacaaaatgctcagaaaagtaagaatagaaaggaacttcgtcaacttgataaatagaatctac-aaaaaattttacagctaacatactcagtggtgaaagactagatgctttcccccctaagactgggaacaaggcaaggatttctttctttttttttttcggcaaggatttctactctccactctcattcaac--ggtactgggacttctagccagtgcaat-agcaagaaatggaaataaaaagcatgcagattgtaaaggaagaaaaaatattg a score=4271 s hg19.chr6_ssto_hap7 4201680 109 + 4928567 GTGGTTTGTCCTCACCAATTTGTATTTGAGGTTTATGGGGATACTTTGACACTTAGTTTTGTTGAAAATGTTA-------------AGATGCTGTAttaaattatactttttattttgatat s canFam2.chr12 69367637 122 + 75515492 GTAGTTTGTCCTCATCTGTTTGTATTGAGAATTCATTTAGATACCTTGTCACCTAGTTTTGTTGTAAATGTTATCCATGGGTTTTTAGTTTTTCTATCTACTTGTATGATCTGTTTTCATAT a score=63181 s hg19.chr6_ssto_hap7 4209037 1533 + 4928567 aaaaatctctttaatgtctggcttaataaag-ctagcttggttatatattcttctacattcaagctgtaacaatatgttgttttggctaaagtacaagaggagaatctggcctcactcttatacacagttgggaaaagaaggaaagtttcaataaccatttcagctattgtaactgttcttccttgataagacaccaaaactcaagaaatggcagattcttaaaggttagttgcagtgtggaatctgaaaccttataaattaacttttcatattctgttgtgttaaaattcactagtctatctt------taaatggatcttttcctctatgcatg---actttgcaatatcatgcattgattatttgtaaattattgattcatgggtttacgcagttttttaaaatgttgacatattttattaaacaatattttttaaaccatatttgttaatatcaccaccaatctcatcagaaacatctttaagtagtgagaagctgcggcacacgtaagttttccaaaattttaatttt-ctcttgaaattccaatttccactgtcaatattattttctctgatgggataggctcattttgtttatttttgagaaaatttctaccaaatacccaagtctgaataatcacagtgtgcctttcagtcattctttcaaggaaaatgatgacccactaaaaaaaaaa----tgtttaacttcactcacaactcatgcaattacataatggcttttccacaggacaactgcctttccatcagtatgcaccagaaatgctgcctatgttcttacactgactattaaacagatgtgtgtttgaggtttaaaatttagtaaa-ctaatgatttt-attgcttcatcaaagtcactggcttttgctt---tttttttttttttttttttttaactgtaagcttatggcagtgaagaacatgac--ctacctgtacagcttggtgtcaccaccttgatttgtgctcaggcactaacagtttcatgtgaccaccatagatttctgtaccactatgtaaataatacagtgaaaaaggcaaataacatcttagtattagtacaaaaatagctt-gacttcatagg-ccccttgaagggtcccagggacccccaggga-tccatggaccacaccttgaaaaccacCACatgacagggatatcaacataa-ggaatgatggtgagcattaaacatatctctactcacagaactaagactaacaagggagtaagtagtctatgcaatgatacaggatcaactaatatagacatagttcaactagaaagcgggggagaacataggtaaaaagggagaaCACAGGTAATAGGGAGAATGTAGGTAAAAAGAATTTCAACCGTTTTCAGTAGCCATTTTGGTGGTTGTAGTATTAGTGTTATTATCCTTAGACTGCTGTCTATGTTAACTCAGGAAAAGCAAATAAGTA----TGGACATTCTAATTGTGTCTGTCCCTGTGTCCTTGAAAACCAGAGTTCTTGGTGT----AAAAGAAAGGAGATGCAGAAGTAATATAGAGAAGACTGAt s canFam2.chr12 5378853 1490 + 75515492 AAaaatctgtttaatgtctcatttagtaatgactcacttggtcataaattcttctacactcggtctgcaccaatatgttgttt-ggttaaaacacatacagaaaatgtggcctcactc--------agatggaaagaagggaaaaattttaatagcc-tttcagctattgtgtatattctt---tgataagatggtaaaactcaacaaatggtagatttttacaaattagttgcagtgtggaatctgaaatcttatcaatggtcttttcatgttctgttatgttaaaattcattgatctaccttgcactttgaatggacc-----ctttatgcttggtaatttagcagtaccatgaattgatcatttggaaagg---ggttcacaggattatgcagatctccaaaacgttgacacagttcactaaatatgaaa----aaagcatatttggtaatatcaccatcaatctcatccaaaaaaatatttattattaggaagctggggcaaacacaagttttcaaaaattttaatttttctctggaaaatatgactttcactgtcaatatcattttctttgaagtgaccggcttcttttgcttatttttgagaaaatgtctaccaaa-----aatattaaataaccacagtgtgtctgtaagtcactcttt---gaaaaattgcagtccattagaaaaagaagaggtgactagttttatctagacgtcaagcaattacacagtaa-ttttccacaatataaatgtgtttccatcactttggagaagaaatacta---attttgccacactgtgtattaaaaagatgcctacttgagattcaatatttagtaaaactaatgatttttattgcttcaccaaag---ctctctttaggtaaaactgacattcttgaagatttttcactgcaagtacatggcagccaagaacaccatgactacttgcagaatttagtgtcactgcctggattcgtgctacagcaccaggagttttac----ccactgtagattt-tgcatcatca-gtaca-aatacagtgaaaagggcaagtaagagcttattattattacaaaaatagttttgaccttgcagatcccccaaaagggtctcagtgacctccaaggagtccacagaccacaacttgaaaaccactgCACTGGAGAGACACTGACACAATGGAATAGTAGTTAGCATTAAACACGTTATTATTCACAGAACTAAGACTAAAAAGGGAGCAAGTATCCTCTGTAATGGTATCTGATCCATTAATTTAGATATAGGACAACTA---------------------TAAAAAGGGGAA-------TGATGAGGAGAACAAAG--CAAAGGAATATTAACTATTTTCAGTCATCATTTTGGTGGTTACAGTATGGGTATCACTATCCTCAGACTGCCATGTGCGTTCATTTGGTAAAAGCAAATGAGTACGGGTGGATATTCTAATTGTATGTATTCCCATGTCTTTGAAAACCAGAATTGTTGATGTGGAAGAAAGGAAGGAGACACAAATGTAATACAGAAGAGATTGAT a score=166631 s hg19.chr6_ssto_hap7 4210754 3379 + 4928567 GtcaaacactgatcctgcctttccactgtaccactaagtagcccactagtaagtggagggaagtgtctcttCACtagtaaatgaagggaactgtctctttgtagcattaataaagcata-aaatgaagaaaaaatgacagaat------accaccatttagcaatccccaataaattaacaaacctaagcaattagtatcaatggttgctaacatcacaaaaagaaacagctggaaattatgtctctcatggtgaaaggccacaacaccacgtatagattttccaaaggaaaagattgaaccagagtctgatccagcctctgcatccagatgccaatttgcgggaggcacagaaggcaga-ggatgtgttacactgcaccatgtgtatgcagccagcaaaatccagagtgtgggaaactctacaggtcaaatggattgagcttttcaacagattaatcata--agggggaaaaaaaggctgatgggggagaaaccagtgaagtataagagacgtaaaagacaactaagctgtggcgtccaggaacacatacctgggggactagactacaaagacatgaaagaggttacaataa-aatcaggatatggtcactttcgaggggaaggagaggc-tttgattggcctgacgtacag--agacttctgctggagctggcaaagtcctgttccttgacttga-------ttacaggggtttttc-ttaaataattcactaaaatgtacatttTTTGT----------ATCTCCATTTTATTTGACAATAAAAGGTTTTT-----AAAAACAGTGAAAAGGAAACAGTGACTACCTGAGCATTTGTCTTCTGAAGACTGTGGAGACTGCAGTTGGAAGACAGAAAGCTTTGGAGATCATGACTTATAGGAGTAGGGCTGGACCACAGAAAAGTAAATGATTTGGGGCTGGAAGGAGTAAGGTCTCAGGGGAGTTTCTGGACAATGCCCTTGGCAATGGGGATTAATGATGTACACGTAGAAGGGAGAAGGGCAGATGGGTGGGAGATGCATGATCTCAGAACACAGAGCTCCAGAATCAGTTCGGGCTCCTCCAAGGATCAGGGAAGAGAGTTATTCCCAGAACATTGACCTCATGAATGTCCTTTACCTCACCCAGGGCCCAGACTACTCATCACTACTTCAGGCTCCAGAGAGAGAAGCTTCAGTGAGGACCTTAGCATGACTGAGGGAGCAGAACAGCTCTTGAGACCTGGAGGCACAGTGATGAAGGTCTCAGGAGGCAGCCTCACCACCCCCCACAGCCGTTCCAGAGACTCAGGGGACAGTCCCATCCAGACAGCAGCAACCTTACTCCTCCCTACCCCCATGTCATCTCCCTCTGGCCAAAGAACCGGGAGAATGATCTGCCACTCAAAGACAAGGAAAAAGAGACATTACCTCATTACCAGACATCTGCGTCCTCACATATCCTGGAAAGAAATCGAGAAAAGAATGGATTGCCCCAATTAGGACCCAATAT---GATTATCCCGAGGGAAGAACAAATGGCTGGCAAGGTCAGCACTC--TCTCTGCTTATCCC-------ATTTCTAGCTTCAGAAAAAAATTATCCCGGTGATCCCTGAGAGGCACAATCAGCTTTCCTTGCCTCAGATCATTGACGTTAGGGAAGGTGGGAGTGGGGAAGGTC-TGGGACAGGTGGCAGGGCACTCCTCACAGGCTCAT-TACCTTTCTGAGCCCTTAGCTGGATGACGATTCCCACCAGAAGGAAGATTAGCCCAAGTAGGAAGGCTGCAATGCCACTCAGCATCTTTCTCCAAGAATATTCAGACTGAGCTCCTATGGGAAACAGGTCTTTAAATTAGTAAAAATATCCCAATATTTAAAGCACTTTCTTGGAATCCCAGAATCTGTACTAGACACCAAATCCAATGCTAGCTAGAGAAAAATAAATAAATTTAGAAAAGGTTCTTCGAAACCAAAGTTGGCACCCATGGAGTTACCACCCATCGGTTACAGATTCTCACAGCCCATAAGAATGCCTCCTAA-ATACTAAGACCAAAGAATTAGAGGACACCAGTTCATAGGGTTGGAAGCACATAATGAGGTGATTAGATCTCCTCATTTCTTGGAAGATATGAGGATAGATATCTGCCATGTTTTCTCCCACCCTAACCCAAGGACTCTGGTTTCTGTGACTGTCCCAGATCAAGGGAAAGAATAATTCATGTTGTGACCAAGATAAACGCAGAAGTGACACA-GGCTCTGTATTGAGTCAGTATAGTCCTGAGTCAGGCCCAGAGAGTACTAGAAACTAATTCTCACTCCACTCCACAGAAACAGGGCTCAGCAGGCTGGAGTGATCGACAAGGCAGGTGTAGACATGTCCAAGTTCAGGAGTCATTTCTAGCATCACCACAGTCTGAAAGGTCCAGTCTCCATTCCTGATAGGGCCAGTGGACATGACCCCAGCTCTCTCCTCCTGCCCATTCAGGAACCACTTGATCTTGATATCCCCTGGATAGAAGCCTGTCACAGAGCAGTGCAGCAGATTATGCTGGTGCAGGAGTGGGGTCCTCTCTGGGTACACTGTCACCTCTGGTTGCACTAGGAAGGGAG--GAAAAATGAGACACCGTGAAAGAAAACCACCAAGCTGGGACAGGAGATTCTTTAGGGACTATCACTATGTCTAATCTCTTTCCCAGATCACCCAAGTGAACAC---AAAGTATAGGCAAGTCTCAGCCCCCAAGA-TCAGTAACAGGGTATGTCAATGCCTGTCAGGAGGATTTAGACTTTCTGAGGTACTCCCATAATTACTGCTTCTCTTTGAGGGTACAATAGCCCTCGAAGTCCCTGAGAACCTTGGGGGTCTGAGACCAAGATCACAGTGG-CTGACTTGTGAGGATAA----TATATCACAGCTGGGGCCAGAACATCTACACAGA-------------CAACCATTTATCCTAAAGCAGAAAATTGCTTGT---AAGAAAGAAGAGCCATGGCCAGGTTCACATGGGGGACATTCCTGAGCCCCGCCAGACCTCAGCTTCCAGCTCACCTTTTCTCCCCACAGTGAAGGGTGCGCCCAGCCTGTAGTTGTGTCTACAGACCCCATCCACGGCCTGTCTGCTCCTCTCCAAGAGATCCAGCCGGCTGTTCCACTGCTCAGCATCTGGCTGCCCCAGCTTGGTCAATGCCACAAACATCCCCACATCACTGTCGAAACGTACATACTCCTCCAAGTTAAAGATGAATCTGACCACAAACTGCACCTTTTCTGTCCCGTTGGTGAAGTAACAGTCAGCCTTTGCCTGAATCACAAAATCTTCTGGAAAAC-----CAAAACCAAAACCATGAACCAGCCCCCTCCTCTGGGAAAACCCATGCCTGGTAAATTACGTCAGACCACATGGATCTAAGAGGAGGCC-TTTGACCTCAGTA s canFam2.chr12 5380811 3328 + 75515492 gttaaacactgatcttttctttccactgtatcactgggcaacccaccagtaaatgaagggaagtgtctccttac----------------------------agaagcaataaagcatacaaatgaagaaggaatgacagaatgaggatatcctcattctgcag-acccagtgaaggaaagggtctaggcaaggagcactaacagt-----------------gacacaactggacagtgtgtacctcatgatgaaaaaacacactgccacctgcagacttgccaaag----agattaaatctaactgt-atccagcctctgcatccagttgccaacttgcagaaaatgcagagaatggaaggacatgctaaactgcaccaggtgcgtgcaattggtaaaatccagactgtgggaaactctgcaggtcaaatgctccaggcttttcaaaatattaatcatcccaggcggaaagg------gatgcaggagaaacctgtaaagtat--gaaacataaaagacaACTAAGCTATGCTATC-ATGAATTCATACCTGAGTGAATAGGGAATAAAATAATACAAGTGGTTAGTCTGACagtcagaataggattgcttttgagaggagggtgaggggtttgatgggtctgaggcacatgcagactcttgcagg-gctggtaa-gttctatttcttgatctgagtggtgatttcagggtttttcccttcaataattcattaaattctacattttgtgtggttatcttcatttccgttttatt-aacaataaaaaAATTCATTAAAAAAAACAGTCAATAGGAAACAGTGCCT--CTGAGCATTTGTCTTCTAGAG-----------------TGGAA-AGAGGAAGATGTGAAGAT---AACTCACAGGGTTAGGGTTGGACCACAGGAAC-TATGCAGTTTGGGGCTCTCAGGAGCCAGCTCTGGGGGGAATTTCTGCATGCTGTCCTTGGAAACAGAGATTAATGA------CACAAGAGGAAGAAGGACAGAAGAGTGAGAGAAGCATAATCTCAGAACACAGAACTCCAGAATCTGGTCAGGACTCTCCAAGGCCTCGTGCA---AGCTGCTCC-AGAACCTTGACCTCATGAGTGCCCCTTATGTAGTCCAGGGCTCAAGCCTCTCAGTACTACTTCAGGCTCCGGGGCAGGAAGCTTTGGTTGGGAACCTAGCATGGCTATGGTGAAGGAACTGCTCTTGAGATCTGCAGGGACAGTGATCAGAGTCTCAGGAGG--GCCCG--CACTCTCC-----CATTCCAGAGACTCAGCACCCAGTGACACCCAGCCACGGCCGCCCTCACATC---CTACCCCCAAGACATCTCCCTCTGGCTAAAGCACTGGGAGAACAATCAGCCATCCAAAGAGAAGGAAAAAGA--CATTACCTCATCACCAGAAAACTGAGTCTCCACATATCCTAGAATGAGA---GGAAAGAAACAGAATGCCCTTGTTAGAACCAAATGTTGTGATTATCCTGAAGGGAGGGTGA-TGACCTGAAATATCAGAATGCCATTTCTGCAGACCCCCTGAAATATCTCTGGCTTCAGAAAAGA-CTATCCTGGTGATCCCTGAGAAGTACAATCAGCTTTCCCTGTCTCATATCTTTGAAGTTAGGGGAAGTGGGAGTGGGAGAAGCCACAGGGCAAGGGGCAGGATACTCCTGAGAGGCTCAGGTACCTTTCTGAGCCCTGAGGCAGATGACAGTCCCCACCAGAAGGAAGATCAACCCAAGCAGGAAGGCTGCAATTCCACTGAGCATCTTTCTCCAAGAATATGTGGACTGAGCTCCTGTGGGAAACAG--TCTTAAAATAGTAAAAAAGCTCCCATATTTGATGTGCCTTCCTGGGATTCC-GACCCTGTACTGTACACTAAGTCTAGTGCTATCTAGAGAAGAA---ATACATTTAGAAATGGTTCTTTGAAGCCAAGGTTTGCCCCCATGGAATT--------TCTGTTACTGAATCTTGCAGCCCACAAGAATGGCCCCTAACATACTAAGAC-AAAGTATTAGAGGATACTACTTCTCACAGCTGGAAATAAGTGATGAGGTGGTTAGATCTCCTTCTTTC--GGAAGATACAAGGATAGCTATCCACCATGTCTTCTCCTCCCCTAACCCAAAGACCCCAATTTCCATGACTCCCTCAAATCAGGGGAAAGAAGCAAAAGTGTTGGGACCAAGATGAATGCAGAGGTCACACAAGGCCCTGTGCTAAGTCATCATTACTCTGAGTCGAACCCAGAGAGTACAAGAATCTGATTCTCACTCCACTCCACAGAAACAGGGCTCAGCAAGCTGGGATGATTAACAAGGCAGGTGTAGACATCTCCAAGTTCAGGAGTCATTTCCAGCATCACCATTGTCTGAAAGGTCCAGTCTCCATTCCTGATAAGGCCAGTGGACATGACCCCAACTCTCTCCTCCTGCCCATTCCGGAACCACTTGATCTTGATGTCTCCTGGATAGAAACCTGTCACAGAGCAGAGCAGCAGATTGTGGTGCTGCATGGATGGGGTCCTCTCTGGATACACTGTCACCTCTGGTTGTACTGGGAAAGGAGAAAAAAAATGAGACACTGTGAAGGAAAACCACCATGCCAGGACAGGAGTTCTTTGAGAGACTACCTCTGCCCCTAATCTCCTTCTCACACCACCCAAGTAGAAACTGGAAAAGGTAAGGAAATGTCTGCCCCCAAGAGTCAGAAACTGGGTATGTCAGGACCT-CAAGGAGGAGTTAGGCCTTATCAGATACTCCCACAATTACCCCTTCTATTTGAGACCCCACTGGTCCTTAACATTCTTGAGAACTTTGGGGGTCTGGGACCAAGACCAAAGTGACCTGACCTGTGAGGATAATGAGTGAATCGCAACTGGGGACAGAACATATGCCCAGAATCCCCTGCTCATAAGTCATTTATTCTGAAGCTGGAAATTGCCTATCACAGGAAGTAAAGCCCATGATCAGGTTCATGTGTGGGAGATTCCTGAACCCCACCAGACTTCACCTTCCACCTCACCTTTTCTCCCCACAGTGAAGGGTGCACCGAGCTCGTAGTTATGCCTGCAGAGTAAATCCACAGAAGCTCTACTCCTCTCCAATATACCCGGCTGACTGTTCCAGAGCTCAGCATCAGGCTTCCCCAGCTCTGTCAATGCCACAAACATTCCCACGTGGCTGTCAAAACGTGCATACTCCTCCAGGTTAAAAATGAATCTCACTACAAACTGCACCTTCTCTGTTCCATTGATGAAGTAACAGTCAGCCTTTGCCTGAATCACAAAATCTTCTGGAAAACAACAGCAAAA--AAAACTATAAACCAACCTCCACCTTTAAG-AAACCCATACATAGTAAATTATGCCAGATCACATGGATTTGAGAGGAGGCCTTTTGACCTCAGTA a score=31186 s hg19.chr6_ssto_hap7 4214140 1036 + 4928567 aaagcacagtgtcaagtgagaaaagaaacagaatgggattcaacagagaatgacatttattaaattttaaaaacacataaagagcaagaatgctacatatttctaaaagccactctcatacttagagacataccagacacgtttagaatggattctctagggaggggagagaatgagaacggaggcaagagaagagacgagagagtc-----ttgcactactgccaataattacaatgtgctgtgaactcattgggtaaaattaaaccaatcct----atgcacttaagAACAACAACTACAATAAAAAGGAAATTCAAATGGAGTTAATAATGTAggtaagtcaggaagga-cgtcctgaagacattgcatctaagtcaagacttgaaagataaTTGCTATTAATGTTGGGTTGTAA-TTTACTTTCCTTTCTAAGTTCAGAAGCCTCCTCCA---ACTC-TGAACTGAGCCATAAGAATGAC---------CTTCCTGGGTGAACCCCACTTATCCCTCACTCAGTAGCTAATTTCAGATGAAGTTCCAGCCTGTAATTTCTCAGCATGTATACTCTTCTCTATTTCCTCTAGTAGTCTAAACCAGGGGGGAAATCTGAATTTTTCATCATCATTTAACATCTGTGCTGATTTTTTTTTCAGTTGTATTGTTTAATGGACATTATAAACTCAGGGCGGTTTCTATTCTCTAAGAATAATGATC-TCTCCTGGCCA-------------GGTTTGTTCCTCTTTTGTATTTAATGAAAC--TAACATGCAAAGGGGATTCTGTTCTTAGCACATTACATCCTGTTT-CTGCTCATTAATATGTGCTTTCA---TCTCACATTGCTTCATGGCTGCATATTCTGTCACCTGTGCTAGAAAAATAACAGTTACAAGTAACTTGTACCTGGTAGCCGGAGGACAAGGACAATGTATTCTATTCAACTTCTCTTACTTCTCAAAACTGTTTAGTACAATTCTGACAATATAATAGTGGCTTAATAAATGACAGAAGGAGCAACCTTTGTTTCCAGTTTCATTTGTCCACATATACCCCAACTG s canFam2.chr12 5385585 961 + 75515492 AAAGCATAGTGTTAAGTGACAAAAGAAGCAGAATTTGGTTCAATGTACAATGACatttattaaaattttaaaataCACAT-GAAAAACAATTCTGAATATCCTTACAGGCCAGCCTCATAGTTAAAGTTACATCAGACACATT-AGAATGGAAT-TGTAAGGAAAGGAGGGAGTGGAAATACAGACCAGGAAAGAG--GAGAGAGTCCTTTCTTGGACCA--ACAAATGATTGCAAAGTGCTGTGAACCCACTGGGTAAGACTGACGCAATTCTCTGTATGCACTCGAGAACAACAAT----ACTAAAAGGAAACTCAAATGG-GTTGATAATGtaggttggtcagaaaagatctccctgaagaagtggtat---------------GAGGATAATCGTTAACGACCCCGAGTTGTAAATTTGCTTTCATTTCTAAATTCAGAGGTCTCCTCCAGGAACTAATGAGCTGAGCGTTAAGGACTACTACAGCATCCTTCCTGGATCAGC--------------ACTTAGCAGCTAAAGTCAG-------------CTGTAACCTCCAA-------TGTTCTTC-------CTTCTAACAGTTTAAATCAGAAAAAGAA----AATT----ATCTGGGTGTCAGATCTGTG-----TATGTGTTAAGACCTGTTCTTTAACGGACATTGTAAGCTCAGAGAGGTTTCTATTCTAGGAGAATAACCATCGTCTCCTACCCACCCTGCCCTCCCAGGTTTGTTCCTCTTTTGTGTTTAATGAGACCTTGACATTCAAACAG-CCTCTGTTTTTAATGCATTATATCCTGTTTTCTACTGATAAGTATGT--TTTCAGGGTGTAATACTGTCTCATATTCGTGCAGCCCATCTCCTTGGCTAGAAAAATAACAGCAATAAATA-CACATATCCAGGAACCTAAGGA-AGGCATAATGCATTG-----AACTTCTCTTATTACTCAAAGCTG----------------------------GGGTTAATAAATGCCAAAAGAATAAATCTTTGTATCCAATTTCTTTGGTCCACATGTATCTCAGTTG a score=47839 s hg19.chr6_ssto_hap7 4215305 985 + 4928567 TGATAC--ACACAATAAGGATCCTAAACAAGACACAATGTTTCCCT-CTTCCTGCCTCCCTACCCCTTGAATAGGTGGCTCTGGTATATGA-----------------AGTCCATCCCATGT---AAAGAGGCAAGGCGTACCTTTCTGCCAAAGGGAAGAACACTGTTCTTTGAAACCAAAAGCCACTTCCAGTCTGGTCTGTGGCCTGGACTTACAAAGAAAGGCATCACTCCCCCATGCCAATTCTTGCATACACACTGGAAAAAAATAATTGCTCTGTTCTTACCTGGAGAGTCTGTGCCTTGAGTCATGGAGGAATCCAGTCGGGTCAGATTCACTAGCAGAGCCACCACCCAGGGGACCCACCCAGAACCCATTCTGGA--GAAAGGAAAAAAATGAGACAGTAAAATCGTCAGCCTCTTCAGAATGAG-------TTCATAAAATTCAGTCAGAAAGTACCCATTAAGAGTATAAATCGCTGTTTTTCTGGCTTCCCCAGGATTGGAAACTCCTCAGATTGACAACCAATCAAGATAGAAGAGTTTTGCATCATCAGGTACTGGGTAGGATACTTTCACAAAGTTGTGTCATACAACTCAACCATTGTTTGCCTGCAGAATCACTGACAGTAATTTAG---GTATACTAAAAATGGGCTGGGAGAAGAAGTAAAAATAT-----ATGTTTGACATATTATGGGGCCCTAGAAGAACTAGGCAGACTGTTTATTATGTATTCTTCTATTCCCTGGCCTGTTCTGACCAATAGGTCTCCCTTCTTATTGGGTGTTGACATTGCCGACAGGCAGTGTGTAAATTAAGAAGGAATTAAGAGTATGTAAATTAAGCATTCTGAAGCATATGCCTCAAGAAGATTTAGTAAAGGGATTATCAGAGAAGAAATAGAAGACATAGAGAA-CATTTGGAGAGTACGATTTCCTATAAGCCA--AAATGACCACAAAAAAAGAAAAGAAAAGAAAACATGGAAAGAGAATTCTCAA-AGAATAAAATTTTGC s canFam2.chr12 5386642 964 + 75515492 TGACACTGATATTATAAGGACCCTAAGCAAGACAAAATGTTTCCCTTCTTCCTGCTACCCTACTCCTTGAAGCTGAGGCTCTGCTGCAGGATGTTCCCTTTTTCCAGCAGTCCATTGTGTGTGGTAAAGAGGGAAGGCATATCTGAATTTCAAAAGGAATAACACT-----TTGAAACCAGAAGCCAGTTCCAGTCTGGGCTGCAGCCTGGACCTACAGGGAAAAGCATCCATCCTCCATGCCAATTCTTGCATACATACCTGGGAAAAA--ATTGCTCTGCTCTTACCTGGAGAGTCTCTGCCTTGAGTCATGGAAGAATCCAATCCAGTTACATTCACTAACAGAGCCAGCATCCATGGAACCCACCCAGAACCCATTCTGGAAGGAAAAACAAAAAATTAAACAGTAAAGTCATCAACTTCTTCAAAATGGGGCTTACCCCCTCAAAACTCAGTCA-AAAATATTTATTAAGAGTATGAA----TACCTTTCTGGCTTCCCCAGGATTGGAAACTCTTCACACTGATAACCAATCATGATAGAAGAGTTTTGCATCATTAGGTGCTGGGTAGACTACTCTCATAAAGTCATGT-ATACCACTCAAGAATTGTTTACCTGCAGAATTACTGATGGTAGTTTAATGTGTGTGTGGAAAATGGGCTGTGAGA-----CAAAAATGTTTTAAATAGTGTACATAGTATGTGGTCCTAGAAGAACCATGTAGATTGTTTACTATGCATTCTATT-------------TTTTAACCAACAAGCCTCTTCTAt-------ggttgacattgccaacag--agtgtgcaaataaagaagaaggtagacatg------------attctgaagcatttgcctcaaggggatttaatgaagggattatcagagaagatatagaagagattgagaaccacctggagagtatgatttcctataaaccaagagagggccacagaaaagaaaataaagagaa-------------gattctcaacagaataaaatgctgc a score=5395 s hg19.chr6_ssto_hap7 4216290 176 + 4928567 AAAAAGGCTCACCAGGATACAATCTAAGAGAGCATTATTGTGTTTTATGGTTAGTAGGGCACCAATAACCTTCAAGAGGACAGCAGAGTGTTAAAGGTAGAAGCCATATTTCAAAAGAATGAATTGGAAACAAGAAAACAAAGGCCGCAGATTAAAACAGTCTTTCAAGAATTTTG s canFam2.chr12 5388021 133 + 75515492 AAAAATGTTCAAGAGGATAAAATATAAGA-AGCATTATTGTGTTTTATAATTAGTGGAGCACCAACAACCTTCAGTAGGACATT-GAGTATT-----------------------------------------TGAAATGAAGGCAGCAGATATAAACAGCCCTTCAAGAATGTGA a score=2868 s hg19.chr6_ssto_hap7 4216466 67 + 4928567 AAAGTGAAAACAAAGGAAAAAATGGGATACACTTTAGA-AAAAAACAACAC-TAAGAAAAAATACTTTT s canFam2.chr12 5388358 69 + 75515492 AAAGTGAAAACAAGGGAAAAGATGGTATTTACCTTGAATGAAAAGCCACACAAAAGTAAAGTTACCTTT a score=5565 s hg19.chr6_ssto_hap7 4216933 122 + 4928567 tGGGAAAAGAAACTTTTAAGACAGGAGAGACTTCAACAAGGTTGCAAGTGAAGTGCAAGGTATCTGTAGAAAGGAGAAACTGAAGAGAAAAAAGAGAAGAAAGGGGACATTTTCTCCAAAAt s canFam2.chr12 5388994 117 + 75515492 TAGAAAGAAAAA-----AAAAAAGGAAGGACCTTAATGAGTTTCTCAGTCAAGTAGAAGGCATCTGTACATGGGAGAAATTGAAGATAAAAAAGAGAAGAAAAGAGAAATTACCTCCAGAAT a score=13295 s hg19.chr6_ssto_hap7 4217579 264 + 4928567 TGTTACACTGGAATGATTTGACTCAAGTGTTTAGTTAAGTATTCTTTCAGTAAAACCTAGACAGTAAAACACTATCTTTAAGCAAATAAAACCAAAAGTGCAAATTGTAATTCACCATCTATGTTATTATTATTTAAAGGGCAATGTTTACTCATCATTTCACATCATCTTT----CAGCATGAAATGTGGCCCTGATTTGCCTATACTGTGCATGTTAAGAATGAACCCAGGGTATCATGGTAACCACAAGTTCACTTCAGTGACTT s canFam2.chr1 17127056 263 + 125616256 TATTACATTAGAATGACTGGACTCAAGTATT-AGTGAAGTATTCTTTGAGTGAAATCTAGACAATAAAACACT--TTTAAAGCACCTGAAAGCAAAAGTTCAT-TTGTGATTGACCATATACTTTGTTCTTATTTAAATAGTGATATTTATTCACTATTTCATGTGATCTTTAATTTAGCACGAAATGTGGCCCTAACTTCCCTACACTATGCACAGTAAGAGTGAACCCAATATATCCAGGCAACCA-AAGTTCACTGCAGTGACTT a score=7695 s hg19.chr6_ssto_hap7 4217989 216 + 4928567 aGAGAGCATAAGGCTTGGGGGAAGAAGGGTACACTTCTTCAGATAAAAGAATAAAGACAGGACGATTAGCAG-GGGATAAAGGGGAATGAGGAAGTTCCATTTAGATGGTTGCAAGGGAGTCAGCTGAGAACAAGGCAAGA---TCTGTCAAAAAGGAGTTGGAAGAAAATATATTTGATAACTAAGAAGAGCAAGAAGTGGTCTGTAAGTGAGTTTTTA s canFam2.chr12 5389127 206 + 75515492 AGAGATTGTCAGACCTGGTTATAAAAAGGAGCACTTGTTCAGCAACTAGACTGAAGACAGGGGGATTGGAAGCAAGAAAGAGGGGAGTGAGGAAGTTCTAGTTGTATGACTTCAATGGACTCCAGTTAGGACAAGGCAAAACCTTCTGCTAGAAAGGAGTTGGAAGAAAATCTTTTTAACCA--------------AAGTAGTCTATAAGTACATTTTTA a score=35705 s hg19.chr6_ssto_hap7 4218216 916 + 4928567 AAGCAGGATTCAGAAAAGAGAGGTGAGATGCAATTGTGCAACCTTTTACTGTTCTATGACCCTT--------AGTAAAT--GCCCTTGGTTAGAGGCCTGGA-TCAGACCAATCAGAAAAATAATTTCTTCTCCATGGGAGATTATAACAGGTAAAGAAAAAGAGAGCAAGACGTGGAAGACATCGCTAGTGTTCA------TCCTCTAATTCCTAGGCCCATGGAAAACGAGAAACTAGACTTCCTACTCTCCTGGAGCTGTGTGACTCGTTCTCACCAATGGAAAGTGAACAAAA-GGTTCCTGGTCAAAGAATTTAACTCCTCGTGCATGACTCTTCTCCTCCTCCCCTACCAAGTCAACCAAGACAGCCTTGTGTTGAGATGGCACAATCCCAGTAGAAAAGCAGT---CTAATTAGCTGAGTCACCATGAAGAGCAGCTGCCCCAGGGAATCACTCACACCTACAACACACTCTGTATGAATGAGAAACAACTGTTCTTTAAAGAAGGTACT---GGCTTGGTTACCACAGCCTGGCCTGACTTGACTTAACTGCTACAGGACAGGAGCTAGGAGGCTGACCCCTCTCCCTCCACATCTCTCATGTAAATGTGACGATTCATGAAGTGGAAGGCTGGCCACAGGC-TTACTGGTAGACCCCCGAGTACAAGGCATTTGACCC-TGGTTTTGAGTACTCCTCCTCCAGGTGGATGGCTGTGGAGCTCACACTGGCGAGGGCTTGTGTGGAGCCGA-GGATAAGGAGGC-ATCAGAGGGCACTCAAGCCACTGGG-TCTAACTTCCTCCCTTCTTCCTGCCCACACCTACCTTAGTCTTTCCCA-GATGTTTTATTGCATTTGGAAATGGAGACAAACACTCAACAC-AGGCTAAGTGAACAAGGACACGGCACGGAGATGATCAGATGCAGTAACAGCATGAG s canFam2.chr12 5390342 902 + 75515492 AAATAGGATTCAGAAAAAAA--GTGAAATGTAACTACATA--CATTTAA-GTACTGTGGCCCTTGCACTTTGAGTAAATATGCCCT--------GTCCTGGAATCTGACCAATCAAAATAATAATTCCTTCTCCT--------------------GGAAAAAGATGAGGAGGtgtggaagacatcactagtgttcaccaatatcttctacttcctgggcacatggaaaat-------tgtatttcctagtttcccagaactatgtgactagttctagacaatAGTTAGTGAATAAAAAGGTTCTTAGACAAAGATTTTAGCTACCCTTGCATGACTTTTCTCTTTTTCCCTTGCCAAGTCAACCAAAACAACCTTGTATTGAAATAGTAGAATCAGAATATAAAAGCAATGAGCTAATTAGCAGAGTTATCATAAAGAGGAGAAGCCCTAGAGAATCACCCAAacccacaatggatgttatatgaatgagaaaaaagttttgcttgtttaaggctctaagggct--gttaccacagcttggcctaacttatcctaactaatataGGACGAGAATAAGATTGTTGA--CCTGCCCCTCCACATCCCTCAGGTATACTTGAATATTCATGAGTTAGAGGCCTGAGCACAGGCAAAACTGGGAGA-CTCTGTCCACAGAGTATAGGACCCATGACTGTGGGTACATCTTCTAGAGGTGAATGGTTGTGTTGCTCCCATTTGTGAGGGCACATGTAGAGCTGATTGAAAAGGTGACAATCAGAGGAAGCTCAAGCCACAGAGCTTTAACTTCCTCTCTTCTTCTTACTCACACCGGCCTTAGTCTTTCCCATGTTATTTTATCTCATCTGGAAGTGGAGAAAAATATTTTACTTGAAGCTAAGTGAATGAGACTCTGACATGGAGATTATCAGAAGCAGCAAAGGCATGAG a score=14419 s hg19.chr6_ssto_hap7 4219155 367 + 4928567 CTTCTTTGTAGACAGCACCATGGCTGG-CTTCTGCAGCTTCCCTCAGAGCTGAAGGAAGGGCCATGTGGAGAGGAGAGGAAG---GGCCTAGACAATATGGATCAAACGGGGGCCTGTATTTAGATTTAGAGGA-GAGAGGGGGTTGATAAATGGCAAGGGATGTGGGGATGGGGAGGAAGTGGAGGATATGG-CGCTGGACCAGAAAGTTAGGAGGGCTGCTCTTT----CTTCTC-TGTAAATGTGTCTAAGGCTCACAAACTCTAAAATCTGACTTGCCTAC------ATaataatagctaatgtttgtcaattgcttattatgagttca--ttttctaagcattatataaatgtgtgcgtgtgtgtgtatgagagagagaga s canFam2.chr12 5391709 381 + 75515492 CTTATCTGCAGGCAATACTGTAGTTGGTCTTCAGCCCTTTCTCTCAAGGATGAGAGAGAGATCTTGAGGAGAGAAGAAAGAGTGAGGCCTAGAAAACACAGATAAAAGGTGTGCTTGTCTGTGGATTTAGAGGAAGAGAAAGAGTTGATAGATGGCAAGAGATGC-----TGAGGGGACACTGGAGGATGTGAATGCTGAACCAAAAAGTTAGGAAGGTTGTTCTTTTCTACTTCTGGTGTGAACATGTCTAAGGCTCATAAACTCTAAAATCTGACTTAACTACATCATGATCATAATAGCTAATATTTATTGATCATACATTGTGAGTCAGGTTTTTTTAATTTTAGAAGAtatttatttatttatttatttgagagagagaga a score=16334 s hg19.chr6_ssto_hap7 4220706 425 + 4928567 GAATTTGGGGTGTCCAAAGCAAACTCATGATCCCACCTAGTGAGAATCCATTTGGAAACTGAGGAACCAAAGGCTTTGGGCTCCAATCTGCAGCCACTTCTTTGATACGACTTTGGGATAGGTGGACTCACCCGAAGTATTGTTTTACATGTACTATTTGCCTCAATTTCCCTGTGATGGTTTTGTCCATCACCTCATCCTGAAAAAATAAATGTTGGTGATGCTTTGTTCCACATATTCGTTCATTTGAACTCATTATTCCCAGGAAATATCCATTGAAATTCAAAATATCATGAACTTCCAAAGGGTTTTCTAGAAAAAAAAAACAAAAAaaaccccttgatcttaatgggtgtttttt--aatctgtgctagaatctgtt-----tggaatgtttta-------tttaggatttttgtgtcagta-taataagtaaa s canFam2.chr12 5402844 419 + 75515492 GAATTTGGGGTGCCAGAAGCAAATTTGTGATCTTAGTGAGTAAGAATACATTTGGGAA-TGAGGAACCAAAAGTCTGGG--TCTAATC---AGCTTCTTCTTTGATATTACTGCTGACGGTGTGGATCCACCCAATGTATTAATTTG--TGCTTTAGTGTCAGTATTTCTCCTAGGATGGTTTTGTCTATCACATTATGCTGGAAAAGTGAATGTTGGTGGCATTTTGTTTTGCTTATTTGTTTATTTGAACTCATTATTCTTAGGAAATATCCACTAAA--TTATAATATTATGAACTTTAAAAAGGCTCTGT--------GAAACAAACTCAACCCT---ATTTTGAGGTGTTTTTTTTCCAACTTGTGCTAGATTCTGTTGTAAACAGAATATTGTAAATATTTTTAAGAATTTTTGTATCAATATTAATAAGTAAA a score=5438 s hg19.chr6_ssto_hap7 4221132 100 + 4928567 tcatctacaatttttatatttgtgcattgtcatagtttaacatcaatattatacttgcttca-taaaaAAATTTTCTTCTA-----TGCCATTGAGCCATTTAATT s canFam2.chr12 5403494 106 + 75515492 TCATTTATAGTTTTTATTTTTGTGCACTGTCATAGTTTAACATTGATATTATACTTACTTCACTAAAAGAATACTGTTGGAATTACTGCTCTTGAACCATTTATTT a score=2419 s hg19.chr6_ssto_hap7 4221551 67 + 4928567 TTGATATAGATGTAGCATATCTATTTTTTTATTGATAGTAATATCTTCTATCTTCTGTGTTCATACt s canFam2.chr12 5404798 59 + 75515492 ttaatatagatccatgagatctaattttatactgttggaa--------tatcttctgtgatcatact a score=45369 s hg19.chr6_ssto_hap7 4221918 1245 + 4928567 TATTTTTTTGTCCACTTAACTGGTCTAGTCCAGGGAAAGGGAATTAAAGTGTTCTATTGGTAGTACATTTCTGAATATTTTCCTTGTATCTACCTTAATttctgctttataagagctacctatttggtatttagaacttaaacacatgtctc----------atatattcat-atgaattttatactttacattataaagtgcccttcttgtcacactcaattttttttttttttttttttttttttggtgaggagtgtctgaatttcatcttgtttggtaagacgaatgtgacctctgcttcccttttgtttgcattctcttgttatgtctttgcccatcatcttatttgttgaaaataatgaatacatctttctgagtggctttatgttaggtgtcttttgcatattgcaaataatagagtttttatcttaatctaatttaaaaatattttcatttatttagttcagttaagaagcccatttataattattcatacagcaaatagattcagtctaattc----------agagatattaacttctgttaagtataatgtttacatgagtattttt--------aaaaatctttcactatgtctttattgtgcattttaaaaattttaccttttcagatattaaggaaggtgtatatttcaaggttgctttgataagtttatttgtatataatacacttagttccctcttcctttagataattcctattagtttTAAATAATGAACAATCACAAAACT---AGCTCATATCCTCTCCCTTCCTCTTTCTGTGTGTGTGTCTACCTTTGTAGTCTTAAATGTG---TAAATACGAGCacttgatttattagttttaaagaatatattttgattcctagat-gttacagacaagaacatcaacaggcttattTGatatccttattcatttttccacttattctataatcattgagaaatgtgtttcaatttctcaattaatttcttcctataattct-cctata-tttcttacatattttgta-gt-------------tttattgctaggtgcaaactgattcagttttagtataatgttctggtgacttcattatcactatgtaatggctgtctttgtttttactaatgcctttggttttagactatatgtttagatatttctgtaattacataagctgtctttctgtcttctgttagtgtttgctttgtgtatcttatatctggttttga-tttaacattttcatgtttttaggttt--cttgtgatcttatgaagggcatataactggattttgcga s canFam2.chr12 5404857 1187 + 75515492 tattttt--gttcactga---------------gaaaagcaaattaaagtcacctaatattagtacatttctgaatgttttccttgtatctcccttaatttcaggttaatgagagttacttatgtgctgtct-gaacttaaatgcacatctcttatgctcttatatactcattatgaattttacattttacattaaaaagtgcc-ttcttgtctcactcaattttttcc----------------------------gtttgaatttcgcctgttataacaatggtgttgttacctctgtttctttcttgtttgcattcttttgttatgccttt-cccatgattttattttttgaata-aacaaatgaaactttctgagtcactcttaggt--gtgttttttgtatattacaaacagtag--tttttctttcaatctaatctaaaatgatttttattt-tatatatcagttaag---cccatttgcaattTT------AGCAAAGAAATTCAGTGTAATTTGTGATTTGTAAGTGATACTATTTTCTGTTAAATATACCATTTATATGAGTTTTTTTTTTTTTTAGAAAATCTTTCATTGTGCCTC------GTGTTTTCTAAATTGCAGTTTTTCAGATATTTTAAAAGGTGTATATTTTGGGATTGTCCTGATAATTTTATTCTT--------CATTTAGTTTCCTCTTTCTTTAG----TTTCTGTTAGTT-------ATGAACA-TGATAAAATTGACAGCTTAAATCCTCTCCTTTTCCATTTT----TTTGTGTTTACCTTTGTACTCTT-AATGTGTTCTAAATGCTAATACTTGGCTTATCCATTTTGTGAGATAATTTTAGACTCCCGGATAATTATAGACAAAGTCACCAATAGGTTTAtcctacatccttactcatttttccatttaatctgtaattattgagaaataagtttctgtttgtc----aatttcttcttataattccatctatattttcctacctattttgtatgtatattttgtgctattttttgctacgtgtaaactga-tctgttttaatataatgttctagtaacttc-ttaacattattcaatgatcatc----tttctactaattcttttgatgttagactacatttctaggtatcaaagtaactacaaaca--------ttgtcttcggttggtgttgattgtttatatcttattgcatgttttgattttaaccttttcctgtctttaggtttTCTTTGTGAT-TAATGGGAAGTGTGTAACTGGACTTTGTGA a score=10505 s hg19.chr6_ssto_hap7 4223163 262 + 4928567 tattgttaatctaatctgagaactttcctttaactcccatatttaagctatttatacttgtgatcactgtgctatttacattcgtttctgttacaatatatggtgctctgtattt-gctatg-tcttactttgcttcttttgttttccttgcatcacttatattaaatcaattacatttttatttaaagtattatttaatttccccttactgatttaggaattttaaattctaattatattagttaaaagtcagtcttatattt s canFam2.chr12 5406492 245 + 75515492 TATTGGtaatccaatctgaaaacct-cttttaacttcaa-atttaatctatttat---tgggattactaaattttctggatttgcttctacta----atactgtgttttctattttgttatgctctttctttgcttcctttttttctc---catcac--atattaaattgattacattttta-----agtattctctattttcctcttacaggcatagtaattttaaattttaattatattagttaagagttacccctacattt a score=2544 s hg19.chr6_ssto_hap7 4223425 67 + 4928567 ttaacatgtttaccaaatgtggcagcatctgaaggtaatcaatatctctaccctcctttcaaacaag s canFam2.chr12 5407361 61 + 75515492 ttaacgtcactgcctaaattagcaatatccgaagttaaac------tctaccctccttccaaataag a score=93232 s hg19.chr6_ssto_hap7 4223492 2198 + 4928567 acaaagactttaggtgctttaactttgTCTGCCTCATTCTCATGTCACTTGTGGTTGCTCTGCCTTATTTTTAAATTTAATAGTCATTTTCATTACTGATTTTTATCGTTACAGTCATATTTCATTTCTCATTCTGATTTTCCAATATTTTAGACAGAT---TTGTTATTGTTGTT--TGTGTGTGTGTTTATTTTTCTCATCTTTGCTCCCT-----------TATCCTTCTGGGTTTAGTATCTCTGTTACTTACATGataatatta-aaaagcaaatgataactacaatacaatgctactttcacccag-aagattgtcaaaattttaaaaattaacactgtctgttggatatatatatatatatatatatatatatatatatatatatggagaaacagataaactcatatgttgctgctggaactataaattaatatagcctctatgaaggcaattttgcaatatctatcaatatttgtaatgtatata---ttggactcagcaactcccc-tttaagattgtatcatacttgtatttttgcacatgtgcattacaatgtctatacaagac-taactagcaacagcaaaagacttccaataacctaactagccatcagtagaaggaaacaggataaatgaaatatggaacttccataaaatagaatactacatagccatatatttttaatt-taaaaaataaaGTTCAGAACAGTGAACTTAGACAGCTGCTGTTTGCGAAAATACTGAGCAAGAATAAAGATATACATATTTGCTTAA-TACACAGTAAACTTCTCTGGAAAGATAAACACAAAGCTGGAAGAACGGATTGCCTATGCAAGAGGAATTAGCAAACCTTGAGAAGGATTGAGAGTGAGGCTTTCCTCTGTATACTTCTTTGTGTCTTTTGAATTTCAAACCACATTCATATATTGCttatttaaataaataaataatatattttaaaaagaggatagtaggaagataagtggaatcagggagtataggcaactcttttgaggagttttatg-caaagctgggca-agtccacctcttccttagctatgtgacccaggcaagttagtaaatgtttctaaaactccattttctcactcttagaattgagatagtaatacctgccacatagaattatcttgaaaaataaggtaagaagacaggtttcagatacttggcacagcaatagcacatagtaagcaccagtgaatgCTTAGTAGTAGTAG---TAGTCTAATTCCTAAGAGTCCATGGAACTCTAGGTTCAAAACCCAGTTTCTTCTGGGACCATTAGATGG-CATCAGACTCAAGCAG----GTGCTCCTCTAGCTGAC--AGCTCTAAAACACAAGGAAGATCTTTGTTTTCCTTATTCCCTAGTCCTTTCCCCACAAAATTCTGACAATTACGCATTTCCT--GCTTGTTTCACAATTGCCATGTGGATTCCAAGTGGCTATCC--CTGGGTGGAGGCATAAAGGACTTGAAACTCAATGCTGTTTCCACATAGGGCCGGGCAGACAGGCTATGGAGGTGTTTTGGCA--TCCAAGGAAATCTATCAG--TTTCCCAAGCTTTCCCCTCTCCATTCATACTTTCCTTTAGAAAGAATAAGGCATGCCTGGGTGGGAAAGATACTGCAGGTAAGCGACAAGAAGGGGAAATTACAGGGTAAGGAGATCAATCAAATGGTGATGGGGGGTAGGAGTGAACAAAAAGAACTCTGGAGCAAACCAGG---ATTAGTGACATCTGTGGTTCCCAGAC-AAACCACACTTACAGGAATTTGTCTGTCTAGCCCGAATATTTTGACTTTCAGGGAGCATTTTTC---TGTGTCCCTGACATAAAGCCTACCTGGGAGTTTCCCCTGAGATAAGAAACTTTCAGGAC------ATCTTAAGGTCTACTGCATCTTCCTGTACTGCCCATCAAGATA----AGTTTTCCACCCAGCTTTATCA-TGATTAGCTGCGTGATTTCATGTCAGTTTCTCT----GTAAAATTAGGTTTGACTGTTGCATTATTTTTAAGATGCCTTCCAGGCTTAAAGTATTATGA-TGCATGGGTATAACTGTACTGAGGAAATCAAAGAATTTCT-CAGATCATCTTCTTCTGTGAGGGCTGCAGCTTCCATGTAGTTGGGAGATACAGGAATTACTATTCCTGTTTTATGAATA----AAGGACATTTG--TGGGAGAGAAAGGAATCAGGCCAGAGTTCTTTCTCTCCAAAT s canFam2.chr12 5407615 2129 + 75515492 ACAAAGACTTTAGAATGTTTTACTTTATCTGCCTCATTCTCATGC----TGTGATCATTCCATCATGTCCTTAAATTTAATAGTCATAATTGTTGGTGATTTTTAT------AGACATTTTTCATTCCTCATGC----------ATATTTTAGGCAGATGAGTTGTTGTTGCTGTTGCTTTGTATATGTGTGTGTTTCTCATCTTTGCTTCCTGTGTCCCAATTTTTCTTGCTGAATTTAGTATCC---TTATGTATGTGGtaataaaagaaaaacaaatgacaactatcatatgatgtcactttctttccgtaagattgacaaaatctaaaaagttaacactctgtgttggtgaga-------------------------------atatggggaaacagataaacttatat--tgctggtggaactgtgcatgaatataacctcagtaaaagcaatttttcaacatatatcaatattagtaatgtatatacacttggactcagcaactccccctttaaaatttgatcctatggatattcttgcacatgtgtattataatgtctatagaaggcattgcttatattagctaaggacatccaaccgcccaactacccatcaataggagaagacaagctaaatgaaatatgatacttccataaaatagaatactatatagccatatatttctgagtgtaaaaaataaagttcagaacagtggatctaaggacttgctctttgtaaaaatagggaacaagagca--tatatacatatttgcttaaatatacatgaaatttccctagaaggataaacacaaggctt-acgcatgagttgtgtatacaaggggtcttggtaaaccacgagaaggat-gggagtgagggtttcctctgcatacctttttgtggcttttggattttaaatcgcattagtgtattgcttatttacataaatga----tatcTTttaaaaagagaatagtaggagagtaagcagatagagggagtataggtaactcttttgaggagttttgtggtaaagctgggcagagTCCATCTTTTCCA-agctttgtgacccaggcaagttagtaaaagtgcctaaatctccattttctcattctcagaactaatacagtaatatctgccacttaggattatcttaaa-------gtaggaagatatatgtcaggcacttagcatagtacc-------------------tgAATGATTATTGTCATTAAAGTTATTACAATTCATAAG--TACATAAAACTCTAGTTTCAAAACCTACTATTTGCTAGGATCATTAGATGGACACCAGACTCAATCAGATGGGTGCTTTTATTGCTCACTTGGCACCAAAA-ACTGGGAAGATCTTTGTTTTCCTCACTCCCTACTTCTC------CAAGATTCTGACAACTGTACTCTTCCTCCTCTTGAATCACAACTACCATGTGGACTACAAGTGGCTATCCGACTCAGCTAGGGCATAACGGACTTGGAATTCAACACTATTTCCACATGGGGCAAAGTAGATGGGGTG-GGAGGTCATCTGGGAGTTCCAAAGAAATCCATGAGACTTTCCTAAGGTTTCCCCTCTCCATTCATATCTTCCTTTGGAATGAATAAAATATGACCTAATGGGAAAGATGACAAAGGTAC---ATAAGGAGGAGAAGTTAAGTGGTG----GACAGATGAAATGGTGTTAGATGGTAGG----------------------------CAGGGTGATTACTATTATCTGTGGTTACAGGACCAGAGCACACTTGTTGGTATTTGCCTA---AGTTC-CACACTTTGACCTCCAGGGAACATTTTCAGAATGTATCCCTGATATAGGACATACTTAGGAATTTCCC-TGAGGTAACCAACTTTCCAGACCTTAAGGTCCTGAGATTTGCCACATCTTTCTGAACTGCCCCACTGGATGTCTGGGTTTTCTTCCCAGCTCGATCACTGAGTAGCCATGCGATTTCAGTCCAGTTTCTCTTTTTGTAAAGTAAGATTTGACTGCTATGTTACTTTTAAGATGCCTTCTGGGCTTAAAGTATTAGGAGTCTATGGGTGTCATTATACTGAGGATATCAAAGAATTTTAACAGACCATCTTCC---ATGAGGGCAACAGTTTCCATTAGGTTGGGAGATACAGGAATTATTATTCCCATCATATACATAGAGGAAGGACGTTTGGTTGAGGGGGGAAGGAATTAGGCCAGATTTCTCTCTCTCCAAAt a score=69735 s hg19.chr6_ssto_hap7 4225690 1936 + 4928567 GCCTATTTTACCCTCTGTGAAATTTGAGAGATGGATGGGTGTGGAGCTGCAAGTCAGCCCCAGGATGAAAGAAAGGCAAATCTGCACAAGAAACTGCCCACTCTCACCCCATCCTCACTGCACCCTGCTCCCAACAGCTGCCAGGCAAGAAAAAATC------CAAAACAGCAG---TTCTGGGGAATTCATTGCCAGCACTGGAAACTACCTGCTGTTTCCAGGAATATGAAGGTTTCTCTTTCCTAGAATAGCAACTTTCCAAGGTAAGTCCCTCCCAACAACCAGTGATGTGTACAATGTTGCATTTTCAGTGGTGGGAGTGGGCAGGGAGGATTAAGATTAGTACGATGGTGGAGATATTTattcatttattcaattgactatttattctccactatgaattaggccctcggccaggtagcagatataaagcttaataagatatatggctttccgcccaggtgctcatggtctagtggaaggtcaaaaaaggtgggaaagggaagatagaactttaaaagggctgtgaaagaggtaa-ccgcacagtgatagaagcacatggagag------ttccccagactgacgacataagtaaggcctcctggaagacctgaaccc-tgagttaagtcttgaa---cttga---aaatcaggggcgagtcgagcagaaaatgggcaagaaaacaccatatgcaaaggcacaaaggtgttggggaaggcaga-agtttgtcg----tggagctggatacaacaggagagggtgagacagatgggctgT-------------CTATGAG--------------------------------TGAAGACTATAACAACGG----------------------------------------------GACTGGAGAGAAGAG-------AATAGA-----------TTCTGA------ATTATTTAGAGCTAAG-------------AGCAGCAGAGCT----------------------------TTTCTTGATGGGATTATGGATTAGGGTTTATGGACCCAAGATGCAATATAATTGATTGGGTCagggtgtggactctagggtcaggcctgtgttcaaactccaactccaccactacgaccaccttgggaaagtcattgagcctctttgagcttcagtttcctcatctgtaaaatggggataataaccaacctcatagggttggagataatgattaaaaacgataatacatgaaaaacacttagcatagctcctactcacattaaaactctataaatggtagctGTTACCAATGTCATTATTAATACTGTTAATCAGGGAACTGTTCTCTGTCCCTCCAGACCCTAGCTTCTTC-AAAATAGCAGACACTGGTAGGAACAAGGAGGGATATAGGAAGGCAATCTCATGAATATTTATGTCATTTTTGGTTAATTTCTATCTCAAACAacagataaacgactgatggaacaggcagcaaaatagcaactatggttatctccaggaagtgaaacaatgggtacttttacttttcttctttgtacttttttatattgtctaaattttctatatgaatgtatACAGTTCACGTAAGAAGGAAAATATTTTAAAATATATGTATTATGCCACAAAATACTCCTCATCACCAGGCAAAGCTCTAGTCACCAGGGAATTAAGTTTCCTGGACACAGACAGCCTccaccccaccac-accccaccccaccccacctctccaccccaccAAAAGCACACAGTGTCCAAATCTCCATCGTGCTTGCAACTC-AGGAACAGCTATCTGGCCGCACAGCTCTAGGGAAACTCAAAGCAGGAACAGCTCTGGGTCCTGGAGACGCCCCTGAGAAGAGGGCCCAGTATCCCTGGGGCCTCAGTCCATCAGCCGCTGCTGAACCAGGCGGGAATAGAGGTCCTGTCCCTCCTGGAGCTGGGCAAGCTTCTGCAGCTTGCCCTCCTGGAGCACCAGGATCTGGTGGGCGCGCTGAACTGCCTGCAGCCTGTGAGCAATCACCAGCACTGTGCGATCCCCACGGGAATTCCAGTCCTGCAGCTGAAGGGGT--GATCACAGTGCCTCAGAAAGACAGGAATGA s canFam2.chr12 5409921 1956 + 75515492 GGGTATTTCACGGTAGGTGATATTCAAGACACAAAAAG----------------------CAGACTGAAGCAAAGGTTGATCTGCATAAGAAGCTCCCTACTCTGACCCCA-----------CCCTATTCCCAAGGGTTGCCAAGCAGGAAAAAAAAAAAAAGCAAAACAGCAGAAGTTCTGGCTAGTTCGTT-TGAGAACTGGAAAGTACCTGCTGTCTCTGGGAATGTGAAACTTTCTCTTTCCTAGAATAGGAACCTTCAAAGGTAAGTCCCTCCCAAAAGGCAGTAATGAACACAGCCTTGAATCTTCAGTGGTTGGCATGTGAAGGGAGGACT-----------------GAAAAGCTTTACTAATTTGT--------------GTGgtctactatgaatcgagccctgtgccaggtagttgatataaagcttaataagatatatggccttcctcccaggagctcatggtctagtgaaag-------aacggaggggtgggaagacaaagagtttaa---tccttgaaagaggtaaaccccggagtgatagaagagcctggagaggacactttctccagactgagatcagga--aaggcttccttgaagacctgaccccctgagttcagtcttgaaggacttggggtaaatc-ggaaagggtggttcaagaaatgg-caagcgcacaccataggcaaaggcacaaagacat-gaGGAGGGCAGGGAATTTACCACAGCTGGAGCTTAATGCAACAGAA-AGGGTGCTGCAAGTGAGCTGCACAACCTCGTATGCTCTGAGGAAGATGTGAGCAGAAAGGAATGAAGAACACTTGAAGGATGTTACAGAAGTGACGTTGCCCTATGTGTCTGCTAGAAAGAAAAATGACTTCACAAAGAATGGCCAGAAGAGGTGAACCAATGGAGGGGAAGGCTCTTTGGAGATGAGATTGTCTAAGACTAAATGAAAGTTATAATAACAACAGAACTAGAGAGAAAGCAGTGATTTCAGAGCTATTTGCCTGATCTGATTATGGATTCGAGACTATGAACACATGATacaacataatttattggttaagattgtggactcaggggtcaggcctagattcaa-ctccaactccaccactgtg-taaccttgggaa-gttatttaatctctttgagactcagtttccttgtctgtaagatgag----ataaccaatctcacagggttgaggaaaaggactaaaa-------tgtctgaaaagcattcagcatagttcctattcacatgaaaactctata---gacagatgttattaATGTT-TTATTAACACTATTAATTAGGAACCTG--CTCTACCCCTCCATACCTTAGCCTCCTCCAAAATATCAGACATCAGTGTGAATGGGGAAAGACACAGAAAGGCAACCTCACAAATATTTATGTCACAAT-GGCTAATATCTATCTCAAAGAACACATAA--GAC--ACAAGATAGCTGGCAAAATAGTAGCTATAGCGACCTCTGGGAAATGAAACAAGGGTTAGTTTTACTTTTCTT---------------------------------GATGAATACGTGCTATTTACATAATAAGGAAAATATTTTTAAATAGATGTATCATGCCACAATA----------CACTATGCAG---------CACCAGGGAAATGAGGCTCTTGGACACAGAAAGC---------ACCACCACCTCTCCCCACCTCGACTGCCAGCCGTGGTAGGAGCACACGTGGTCCAAACTTCCATCATGCCCCAAGCTCCAGGAGCAACTATCCAGGGGCACAAGCCCAGGGAAACTCGGAGCACAAGCTCCTCTGGATCATGCAGATGGCCAGGAGAAA--GGCCCTAGAGCCCTGGGGCCTCAGTCCTCCAGTAGCTGCTGCACCAGGCGGGAATAGAGGTCTTGCCCCTCCAAGATCTGTGCATGCTCTAGCAGCTCTCCCTCCCTGAGCACCAGGATCTGGTCAGCACTCTGCACAGTCTCCAGCCTGTGAGTGATCACCAGCACCGTTCGGTCCCCATGAGATTTCCAATCCTGCAGCTGAAGAGGGAGGATCATAATACCTCAGAGAGATAGGAACAg a score=78088 s hg19.chr6_ssto_hap7 4227628 1860 + 4928567 TGGACACCACATCC-ACCTGGGCACCATCTCTTATGATTTAGGGTAAAGAAGGTGTGAAATAAAAGAAGGTAGGAAAGGGCAGTAGATAAAGGCCTGGACTGCCCTTCTCTCCCAGCTGTACTGCCACAGCTGG-----AGGAATGGAAGCCCAGGAGGGAACTGGGGCTGCCCTCACACCACCGG------ATTCCATTCCCCAACCCC-AAGAAGGCACAGA-----------CTGT-------TTCTACTAGTAGGTCCTTCGTCCTCCCTCTGCCCAATTCTACACAGGCTGATCCTCCCAGCATGCCCCTCCCAGGC-CCCACTGTCCCCTGCCCTCTCACA---GTACTCACGGCCTGCTCGCACTGCACATCTAGGGCACTAGTAGCCTCATCCAGGATGAGGACCCGCGGGTCTCGTACAAGGGCCCGGGCAATGGCCAGACGTTGTTTCTGTCCCGCAGCCAGCTGGCTCCCCTTCTCCCCTACATCTGAGGAAATCAGAGAAATTCCCTTCCTCAGATACAAGTGACACAGATAACA-------CACAAGGAGGGACAAGTGCACAGCAGGTACTTCCAGTAGGACCTCGGGAGGTGGGAGGGCCCAGTGCGGGGAGGGCCCAGTGGGAGGAGGGCCATGGGGTGGGGACCTGACGGGGCTGCCC--ATGGAGGGAGCACCACT-------GCTGCATTGCTCTCTGCAAACAAAGACTCTTGAGCAAGAGGGAGGCTGAAGAATTCAGTGTG-TGGGGAAGG---AGACGTAGGAATGGAGGAAAGGGCAGAGGAACAGCAAACATCAAGTTACAGGGACACGACCTTCACCACTA-AGAGTAAGTCTGATTTTCTCTTTTTTACTGAAGGAGCAGGCTTACAATTTGTAGAAGATACCTGTGTATATTCCATGCTCCATTTCCTGGATGAAGTCATCTGCGTGGGCAGCCTGGGCAGCCGCCATCACCTTATCATCTTCGCAGCTCTGCAGCCCATAAGCAATGTTGTTCCTCACAGAACCGGAGAACAGCACAGGCTCCTGCCCAACTGAAACCACCTGTGCAGCGGGGACAGGGGCAGAGGACTATGTGTAAACCCCCAAGGCAGGGGCCCTTTTGTCCTCCCCACCTACCTCCCTCAGAATGAACACCTGGTGCGCCTTCCCGTGGATCTCCCATCCTC----TCTCTGTACATGCTCCC-CTCTCCTGTCCCCTGTCT-TCTCCCTCCTC-------ACCCACCTGGCTGTGCAGGTAGCAGTGTTCATACTGTGAGATGGGCTTTTCATCCAGCAGCACCTGTCCCCCTGTGGGCTGGTACAGATTCTGCAGCAGGGCAGCCACTGTGCTCTTCCCAGACCCATTGGGTCCCACCAGCGCCGTCACCTCACCAGGACGTAGGGTAAACGTCAGCCCCTAGAAAACCAGAAAAAGAGTTAAGGGCCTGCCCCTTCTCCCTCAAAATCCCTCCATTTCTCTTCTTAGCAGAGGCAAGACCAGGTTCTCAGAGGCAAATGAACTATAGGCTGTGATGTCCAATTATGCATTAGCAGCAGAGAGCAA-GGGTCCAGGTTTCCTCC-------CTCTTTCAGGCACCTTGAGCACAGGCCTGTCAGGGCGATTGGGATATGCAAAGGAGACGTCTTGGAATTTCACAACCCCCTGCAGAGTGGTGGGGGCAAGCGTGCCAGGTGAAGGCAGATTTGGCTGTCGGTCCATGTAGGAGAAAACCTTCTCTGCAGCTCCCACGTTGCTGAGCATATCCCCATATATGTATACCAGGGTCTGGAAAACAGGAATGGGAGAGCCGGCTAATTAAACACACTTCTACCAGAAACCACCCTCCCAACTCCTCACACACTCC--ACTCACAA-CTGCAC------TGCTCCTCCT--CCATACTCAAAAGAGATTCTCCACTTT s canFam2.chr12 5412095 1833 + 75515492 TGGGCACCATATCCCAATTGGGCACCATCTCTTGTAGCATCAGGTAAAGGAGGTGTGAAA--GATGAAAGTCAGGAAGAGTAGATGATAGAG-TCTACCCTGCACTTCTCTATCAGCTGTCCAACTGCAGGAGGCAGGTAGTAAAGGAAGCTGTGGAAGAA-----GGGTGTTTCCACACCCCATGTCCTCCATTCCACTCCCTGCCCCCCGGGGAAGCACAGATACCCCTCCACCAGTGATTACCCTCCACCAGTGAGCCGTTCATCTTCTCTCTGCCCAGTTCTGTGTAGGCTGATCCTTCAGGGGTGCTCCTC--AGGCGCCCACTGCCCCC-ACCCTCCCACACCAGTACTCACGGCGGGCTCACACTGGACATCCAGGGCACTGGTGGCTTCATCCAGGATGAGGACTCGTGGGTCCCGCACGAGGGCCCGGGCAATGGCCAGGCATTGTTTCTGTCCCACAGCCAACTGGTTCCCTTTCTCCCCTACATCTGAGAAAACC-GAGAAATACCTTTCCTCAGACACAAGTGGCCTCGACAACATCCTCCCCAGGAGCAGGGACAAGTGCACACCAG-CAGTTCCACTAGCACCC-----ATCAGGAGTGCTCAC------AAGAGAGCAGGGGCAGGGAGGACA--------GGGCCTG-CTAGGCTGCCCTCAGAGAGGGAACACTACTACCAATGGCTGTGACGCTGTCAG-GAACAAAC---------CAGATGGGCAACTTGAGAACTTCTGGTGCTGGAGAAGGTGGGGAAGTCGGAGCCAAACATCGGGCAAGGAAACAGCAGATA--GAGTCACAGGGACACAACCCGCGCCCCCACAAAGCAGCTC--------------------------CAGGTCCTCCACTGACTGAAGTTACCTGTATATAGTCCATGTTCCATCTCCTGTATGAAGCTGGATGCGTTGGCAGCCTGGGCAGCTGCCAGCACCTTCTCATCACTGCAGCTCTGCAGCCCGTAGGCAATGTTGTCTCTCACAGAACCTGAGAACAGCACAGGCTCCTGCCCGACTGAAGCCACCTGTGCAGAGGAGATGGGAGCATGGGACTGCGCATCAACCCCCGTGGCAGGGATCCCCTTCTCCTCTTGGCCTACCTCTCTCAGAGTGGACTCCCTGGGTTTCTTCCCACTGACCCCCCCTTCCCATGCTCTCTGCACACGCTTCTTCCCTCCTCTCTTCTATCCCTCCTCCTCCTCTATGACCACCCACCTGTCGGTGCAGGTAGCCATGCTCATACTGCCAGAGGGGCTTCCCATCCAGCAGCAGCTGCCCCTTGGTGGGCTGGTACAGATTCTGCAGCAGGGCAGCCACGGTGCTCTTCCCAGACCCATTGGGCCCCACCAGCACCGTCATCTGGCCAGGACGAAGGGTGAAGGTCAGCCCCTGGAAAGGCCAGGAAAGGGTTAGAGGCTTACCTC----------AGTTCCCTACCCTTCTCTCTCTGTCAAAGGTAAGATCAACTTCTCAGAGGC---------------CTTGCTGCCT------------------GAGAGCCACGGGTCCACATTCCCTCCTTGTGGCCCCTTTCAGGCACCTTGAGGACAGACTGGTCAGGGCAGTTGGGATATGCAAAGGAGACATCCTGAAATTCCACCAGGCCCTGCAGAGTGGGAGGGGCCAGCGTCCCCGGAGGATGCAGGTTTGGCTTTCGTTCCAAGTACTGAAACACCTTCTCAGCAGCCCCTATGTTGCTGAGCATATCCCCACACATGTACACCAGGGTCTGGAAAAGAGAATTGAAGGAGTCAGCTAATCAAATGTTGCTTCACCAGAAACCAACTCCCCAGCTT-TCACACACTCCCAGGCCACACTCTGCCCAAGCCAGGCTTCTCCTTCCCTCATCCAAAAAGGATTGCCTACTTT a score=9627 s hg19.chr6_ssto_hap7 4229488 190 + 4928567 TAAATGTACAATTTGGACGGAATTTAAAAGTGGCACCAATACCCCAGTGTTCCAATTTGCAATATAAAGGATATACAG-TCCCTTCTCCTACCATACAGCATTGcctctagccccagatcttttcagttactgcttcctattacttgtgcccagt----tctgtcttgcttgattagacggggagctccttaaat s canFam2.chr12 5414127 190 + 75515492 TAAATGTGCAATTTGGATGGAATGTAAAGGCAAC-TCAATACCCCAGTGTGCCAATTTGCAACACAAAGGATAGAGAGGTCCATACTCCTG---TTCAGCGCTCCTTCTATCCCCAGACCTTC-CAATTACTGTTCTGTATTACTTGTGCACAGTAAGTTCTGTTTTGCCTAACTAGACAGGGAGCTCCTTAAAA a score=76664 s hg19.chr6_ssto_hap7 4229678 2493 + 4928567 gcaggcactgtgcccaactcacctttgtagccgtcagagtgcccagcgcagttctctacacaaaaaagatgtttatcaagtgtctAGGAAAATGTTTAAATAAAGCCCTGGATGAAGTAGCTGTttttgagaactggtaaatgtaggaagagatctaaatgctcactctgcctttcctcatcaaactgtaccaccgggtaatgaaatggtagatgaggggaagtctcccttcatagactacttcagctaatacatgaagaatgatagagtatctcccttttgcagccctaattctgtcatggatgtaggtactgctcatcagtggctgatgttgccacaaatagagaaccagacattgtgtgcctcttggaggaagaatgcatcaccacctaaaaagtactgttgctggaaaaagaccaaaaaaaacccctcaatctcacaagcttctaggtttatctatcaatagacaggaagtacagaggcagaagagcatataataccacagggattcagtcaacaaaatccagaccctaagaaactccacaggacaaacaacctatttcttcaacaaataaactgtgCAAGGGAAACTTTTAGACAGATACatggattgatgggtggatggatggatagatggatggatagatagatagacagacagacttaaaagatgtatcaaccagtcacaatatgtggaccatttctggatcctgatttaagcaaagtataataaacacactcatacacatatactacatggataccacaagtggaaatttgacaattgactatttgataaattttaagaactactgtt----aattttttggtgtgataatggctttgttgttatacacttttaaagatgtttgtatttttaagaaacata----ctgaaatatttacagatgaaagtatacaatatcttggatttgcttcagaataatatgggtggggggaagtggctggggatacagatccaacaagattgggcatgagttgatcattgttaaagcacaggatgtatacatgtgagtttgtaata--ttattttgtctcatttttggcatatgtttaaaattctccATAGCAAAATTACTTGCGGGTTTTGGTT---TTGTATTGTATTGTTAAAAAGAACAAATAAAGCCCAAGGCCCAGGAGTCCACAAAGAAAAAGAGAGGGAAAAAAGGAGAGCAGGCTT-GGCTTCTCGCTCACCTGCACATAGCTCCCCACGCTCTCCTGGTAGATCATAAAGGAAAGCAGGCTGCCCTGGGTGAGCTCCCCATCCTGCATCTGCTGCAGCCCACAGCTCAGCATCAGCATCTGCACCCCCAAGTGCAGCACCTGGAAGAGGAGAAGAAAGAGATGAGGCTGGGAATCTTCCCATTCTTTCCCCCTCTCTGCCTCTATGAGACTGAGCTGCAAAGGCCTCTAGAACCAGCTGTAGTTTCCT----CTTCCCTTGCCCTCCCCCTTTCCTGGGCTCCTTTCACAACCACTCTGGTATCTTACCCTCCTTACGAGCAGGTACAAGGCGCGTTCCAGGTCTCTCCGCCAATACAGCTGCCGACATTGTTCAAGGGCCTCTTTATAGCGACAGACTTCATGCTCCTCGGCCCCAAAACTGCGAACGGTCTGCAGCCCTCCAACGGCTTCCCGCACCACCTGCCCCGCCCTGGCCACTGCATCCTGGATCTCCCGAAGCACTTCCTGGAAAAGAGGGCCAGCAAACACCAGGG-CTGATGT-GCA-AAGACAGCAGGCCCCCACATCTTACTCCAGCCAGTGAGATGCTCC-CTAGTCTACCTAAAAATACCAAACTGTT-TCTCTCCCTCTTCCTTACTCTTCTTTCCAGAAGGAATAAGAGTGAAGGAGCAAGGGAACAAAATATTATTGAGCTCTCAGTGTTAGGTAGTATAGGAGATACATGCAATTTTTTTAACCTTCATTTGAGGTAATTTTC-CCATCCCCAGTGTCTGAATTAGGAAAGAAGGG-TAGTTTTCCCAAGGAGCCACAGATAGTTAA-----------GAAAGGTGGAGATGtaattccaaatggatcagaggcctaaacataagagctaacactataaaactcctaggaaaatgtagaagaaaagcctcatgccactagatttggcagtgatttcttggatataacaccaaacgcacaggcaacaaa-----------aaatagataaatcagacttcatcagaatttaaaacg-tttgtgcatcaaagaactctagcaacagagtgaaaaagcaaccatgaaatacaagaaaatatttgtgaatcatatatctgataggaaattaataggcaaaacatatagtgaactcccacaacttaaaaaaaaa---------------tcagaaaatgggcaaagaacttg--cagacattctttcaagaaagaaacataagtggccaa-aatcacacgaaaagatgctcaatatttactaatcattagggaaatgcaaatcaaaaccacaatgagataatcctaatcacctaatcaccattagaatggctatta s canFam2.chr12 5414518 2121 + 75515492 ACAGGCACTGTGCCCACCTTATCTTTGCAGCCAACAGAGTACCTAGCACAGTTCTCCATACATAAAAGACATCTCACAAATATCTAGGAAAATTATAAAATAAAGACCGAGATGAAGTAACTATttttgaaatctggtaaatatagggaaaaaactaaatgct-attccacctttcctactcagactgtaccactggtttaccaaagagtggatgaagagaagtctcctt------------------------------------------------------------------tcctggatagatgtatt-----ccagtga-----------ataaatggagga------atggt-----------------aaagtgtcactgtcttgcaacccctaataatgga-----------------------------------tctagg---------caatgaacattgatggctgatgc--------------taccacag----------------------------------------------------------------------------------------------aCATACATG-----------------------------------AGAGAGATAAA--------------------------------------GTG----------------TAATATATGCAGTGCATaac---------tgtatacatatgttacatgtatcagacaagtggaaatataaacactg--tatttgataaattttaggaattactgttttgaacttttttggtgtgataagggcttcatggctata---ttttttaaatgtttatgttttagagacatgtatgtaccgaggcttttatagataaaa-----ctgtatcttgaatttgcttcaaaataatatgggtagggg--------------tacagttgaaata-gattggccatgagttgataatt-ttaaagcaggtgatgggtacatgcaggctcattataggttttctggtct----ttttgcatatgtttgaagttctccATAACACAATCAGTTG-GGATTTTGTTTCATTTGTATTATATTTTTAAGGGGAGCAAATAAAGCTCAAGGCTCA-----CCAGAGAGAAAAATGGGGGAAAAAA----GAGTATGCCCAGGCTCCTGACTCACCTGCACATAATGGCCCAAGTCCTCCTGGTAGAGCAGAAAGGAGAGCAGCCCACCTTGGGTGAGGTCCCCAGCCTGGATCTGCTGCCGTCCACAATTCAGCATCAACACGTGCATGCCCAAGTGCAGCATCTGGAGGGCAAAAAGAAAGGCA-----CTGAAAGAGTCTGCATTCTTTGCCT-TCTCCACTCCTACCACACTGAGCAGCAG-GGTCCCCAGGACGCCCTGAAGTTTCCCATCGCTCCCCCTGCCCCACAC------TGGGTCCTCCTGCCAGCCACC--AGCCTCTCACCCTCTGAAAGAGTAAGTAGAGGGCACGTTCCAGGTCTCGTTGCCACCGCAGCTGCCGGCATCGCTCCACCGCCTTCTTATACAGACAGACCTCGTGCTCTTCGGCCCCAAAACTGCGCACAGTCTGCAGCCCTCCAACTGCCTCCTGCACCACCTGTCCTGCTTTTGCCACAGCATTCTGGATCTCCCGAAGCACTGCCTGCAAAAGCAGGCCAGGGGATGCAAGGGGCTGATGTAGCAGAAGACAGGAGACCCCCATGTCTCATCCCTGCCCTGGGGATGCTCCACTCATTGACCTAAAAATATCAAACTGTCCTCTTTCCTCCTTCCTCACATTTCTTTCCAGAAAGACTAATGAGAAGAGAGGGAGGAAAGAAAATATGAT-GAGTTCTCAGTGCTGGATAGGGCAGGGGATACAGGCT-TTTTCTGCTCCTTCGTTTAAGGTAATTCACACCACCCTCACTGTCTGAACGAAGAAAGAAGGGATAATTTTCCTAAGGAGCCACAGCTAGCTAACTGGGACAGGGACAAGGTGGGAATGACactcaaaatggatcaaaaacctaaacc--agagctaagact------cttagaggaaaacatcagggcaaagcttcatgacactagatttggtgatgatttcttggatatgaacccaaa-gcacaagcaacaaagagggaaaaaaaaacagataaattggtcttcgttaagattaaagaagatttgtgtatcaaaggactctatcaacaga---aaaggaaacccacagaataggagacaaaatttccaaatcaggtatctaataaggagctaatatccagaatactgaaagaagtcctacaactcaacaaataaaacacaacccaatttttaaaaaatgagcaaagaacttaaacagacatttctccaaaaaagatacaaaagtggccaacaagcacaggaaaagatgttgaa-----------cgttagggaaatgcaaatcaaaaccatggtggaa--ataaaaatcacctcaaaaatataagaatcgctatta a score=3515 s hg19.chr6_ssto_hap7 4232634 488 + 4928567 ttcctcaaaaattgttaaatagaattgccatatgatccagcagctccacttctaagtatatacccaaaagaaccaaaagcagggtttcaaacaggtgtacactcatgtccacagcagcataattcacaacagccaaaaggtggaaacaacgcaaatgtccattgacagatgaatggataatcaaaatgtgatatatgcacacaacagaatattattcagccttaaaaggga-ggaaattctaacacatgctacaatatggatgaggcctgaagacattacgctaagtaaaatatgccagtcacaaaaagacaaatactgtatggttccacttacgtaccgcaccgggagtcatcacaattcatggagacagaaggtacaatggaggttgccagcggccaggggttgggg---------------------gtagtaggcagttac----------tatttagtgggtacagagtttcattttaggaagatgaaaaaa--------------gttctggagatggatggtgatga s canFam2.chr12 5416639 356 + 75515492 ttctttaaaaa----------------------------gcagT------------------------------------------------------------------------GCAtaa------------------------------------------------------------------------atgtatacaacagaatttcactcagccataaaaaagaaggaaatcctgccacttacaacaacacggatagactctgagggcattacactaagtgaaataagccag--acagaaagacaaatactgtatgatctcatttatatgtgccatctgaagaaaaaaaaat-catagaaaaagagatcagatttgtagttaccagagaccagaggcaggggtaggggattgattggaggaaggtggtcaaaaagtacaaacctccagtcttaagtaattacagggg--aatgtaaGAAAGAAGaaacaaacagaagataacaagtattggagaaggatg-tgaaga a score=2196 s hg19.chr6_ssto_hap7 4233521 85 + 4928567 AAGTcaaatatccattgttggatggctggacaaacaaaatgtagtatatactacaatATACCTTCTCCCCTAATGGCTGAGAAGA s canFam2.chr12 5417218 85 + 75515492 aacccaagcgtccagaaacagaagaatggataaacaaaatgtggtctatacctccatggaatattagccttaaaaacgaagaaaa a score=62981 s hg19.chr6_ssto_hap7 4233680 1346 + 4928567 GGGGTTCCCTTACATGCACGCTCACCTGATGGCGGGTGTTGTACACCTTCTCCGCTGCTATTGTGAAGGGCATGTGCAGCAGAGAAAGGAGGGTGAGTCGAGGCGATATGCTGAGCATGAAGCCATACAGCCCCACCACTTTCACCAGGCTTCGCAAGAGCACATTGGCATTTAAAGGAAGCCAGTTACTCATCAGGGTGGTATCCGAGCTCAGCCGTGAGTTCAGCTCCCCTAAGAAGGACAGAGCAGGTGAGGAAAAAGGAAACCATGTGTACTGCAGGGCCCCCAGAAACTCCC--TCCTGACCGTTCCCTCTGACACAGCCCCCTCCTCTGAACATCCTCCTTCACTTGCAGAGGGACAGTGGAGGCTGCTTCTCCACCCTGTCCCAAACAAGAGAAAAGCATCCCCAAGTCCTGGCAT-ACGGGTGAAGGCAGGAGGAGAGGCTGT----GGGTGGAAGGTCACTGAGGGGCAAGGGATGTCCATGGGAATCTCAGACCTGGACTCCAGGCCCCACCTGTCTTAGTCTCCTGGAAGAAACCGAGGTCCTGGCGCAGCAGGGAGGAGAAAAGCTGCTCCCGGATCCGCAAGTTGATTCGAGACATGGTGTAGGTGAAGCAGCCTCCTCGGCAGCCTGCAGACAGTGAGCTGTGGGGTAGGA---------GAATAAGAGGGGAGGGAGATGCAGAGAAGGAGCAAGCCAGCGGGTGAAACAGAGGAGCAAGCCAGGAGTGCAGAGAAGCGCAAAGTCAGGGGAAAGCATGCCAGGAGGGGCAAAAGAGAAAGAAATGAGAGACAGACACACAGAGAGAGAAGAGGTAAGGAATACACAGAGGAAGAAGAAAGAGGAGACATGGTGAGCTAGATGTGAGAACAAAATCATAACATGTACAAATTTACAAGTATTTATGGAGTGCACTCTGTACTAGACACAATAGAAGACTACAATAGAAGGGAAAAGATATTGTGAAAACAAGTATCCCAGTGCTTGCTTCTGTCCCAGCGTCCCTCAGGCTTGTCCCTCT-GTGCGTCTCCTCCGCCTTGGTCTCCTTCCTGCCCCATACCCAAAGCCCTTCTCTGTCATCATAGATACTTCATCATGGGAACTGCAATAATAAATTCCCTGCCCCCACAATTCTCTGGAGCCCCAGAGTCATGTGATTCCC--ATCTTT--CATCCTTCGAGTTGGAAAATCCCTCTTAGACCAACTACATGCTACAGTAACACTTAGAGGAAAAAATATAAAGCATAAAAGCATGTATTTTACAAAATATATGTTTCTAATACAAATTTAGTTACCATATTGAAGAGGCGTTTGGAATAGTCAGACATGATATAATGAGGGTTTGTACTt s canFam2.chr12 5417388 1308 + 75515492 GGGATCCCCGAACATCCCCACATACCTGATGGCGGACATTGTACACCTTTTCAGCAGTTATTGCCAGAGGCACCTTGAGCAGAGAGAGGAGGGCAAGTCGAGGTGACAGGCTCAGCATGAAGCCATACAACCCCACCACTTTGACCAGACTTCTCAAGAGCACATTGGCATTAAGAGGAAGCCAGCAGCTCATCAATTTGGTATCTGAGCTCAGTCTTGAATTCAGCTCCCCTGTAGAGGACAGTGCCAGTGAGGAAA-------CCAGGTATAATGCAGAACCCC-AGGGACTCCCCGTCACAACCTTCCCCATTGACAGAGCCTCCACTTCCAAACACCCCCCT-CACTTGCAGAGA-CCAGTGGAGGCCACCTCACTCCCCTGTCCCAAAAGAGAGCACAGAAGCTCCTTGCCCTGGCACCATGGGTACAGGTGGGAAGAGAGGCTGTTTATGGGTGGA-GGTAACTAAAGGACAAGAACTGTCCAGGGGAATCCTAGACCTGGACTCCAGGCCCCACCTGTCTTAGTCTCCTGGAAGAAACCAAGGTCCTGGCGCAGAAGGGAGGAGAAAAGCTGCTCCCGGACCCGCACATTGGTTCTGGACATGATGAAAGTGAAGCAGCTCCCTCGGCAGCCAGCACACAGTGAGCTGTGGAGgaagaaggagatgggggaagaaggggacacaggtgcagagaaggagagaataagcgagagaagcagaggagaaagcacagaatgaaaagaaatataaggtt-ggagaaagtgtaccatgagaggcagaagagaagcaga-gagagagggagacaaggggag------gggcaggaataaacagagggaggagaaACAGGC--CAGGGAGAGCTGGATGTGGGAACAAAATCATGACATGTACAAATTCACGAGTTTTTATGGAGCTCACTCCATGCTAGACATAG-GGAAGACTATAATAGAAATTAAGAGATGTTATCAAGAGAAACAACCTATGGCTGGCTTCCATCTG---GTCTCTTCAGATTGTCCCTCCAGTCTTTCCCCTCTGTCTTGGTGTCTTTCCTTCCCAC--CCCAAAGTCCTTCTTC----------CTACTTTATTGTAGGAATTGCAGCAATGAATTCCCTTGGCCACCCCTTCTCTGGAGCCCCAGAGACATGCTATTCCCTCATCTCTACCGTCCCTGGAGCTG-AGGATTTCTCTTAGACCAACCAT-TTTTACAGCAAAACTTAAAGGAAAAATGTGAAAGCAGAGAAGCAAGTATTTCACAAA--------------------TATGGTTTCTATGTTTAGAAGGCTGTTGGCACAGTCAGACATAAAATGAGGAGGGTTTGAACTC a score=919 s hg19.chr6_ssto_hap7 4235556 134 + 4928567 TGAGTATGTCTAGAAAGAGAAAGGAAAGCAAG----------------------------TGAAGGGAAAA----------GAGTAATGATTCTGGAAAG---------AAAGGTGATAAGCCTCAGAGTAAGATCTTCAGGGACTGGCAAGATGAGCTGGGAAAGAAGAGTGAAAGGGAG s canFam2.chr12 5419030 171 + 75515492 TGAGAATGTCAAGGAGGCAACTGGATTACAGGATTGGAGCTGGGTGTAGAAATATGGATCTGCAGAGAAAATCAAAGAACTGAGTCATGA----GGAAAGGCTGTATTTAAGGGTCCAGAGAAGGAGAATAAGTTTTGCAGGGGC-GGTAGATTGGATTGGCAAGTA-----GAAAGGGAG a score=67981 s hg19.chr6_ssto_hap7 4235882 1783 + 4928567 CAGATAAACTTTGAAGATAT---TGGATGAATAT---GAACGAAGGAAGAAATGAATGGATAGATGAAACAGAATGGTGACTACA---TTCAC-CATATTTTAGTTTAAGTATTTTTGTGTTTTGCGC-CTGAAAGGGCCTAGAAATGGAGTTAGGGAAGTGAAGACCCCTATAAAGATTTGGGGCTAGCAAATGGACCCAGCTGCCCACTACCTACCTGCCAAAGGAGAAGAGGCACATGAAGAAGATGGCACTGGCAAAGGCATGGGGGTCAAAATCACCTCCCAGGATGTCAATCACACGACCAGAATAGTGAGGGATTAATGTCTCACCTGAAAGAGGCATGAAAAATAACACAAGAATGTGCTGGTGCGCAGGCCCTTTTACCACCTCCAACTCACAACGTCCTCT-CCTGACTCACCCAAAACAGCAAGGACAAGGAAGAAGAAGGCGGCAACGAGGAGAGGCAGGTCCGGCCTGGAGAGCTTCAGCAGCCTCCACATCAAGACTTTGTTGTTCACCTGGTCCTGCTCCTTCTCCTGGGCTCCAGGAGGGCTCAGAACAGCCCACAGTGACCAGCTGAGCCCCGCAGCCCCGTACCCCACCAGCAGCCAGCTCCAAGGGGCTGAAGCGACTCTGGCTGGGGGAGCACGTGAGGCCCCCGCGACCAGGGCTCTCAGGGAGACAGTCAGGGGGGTGGCCAGACAGAGCGGGAGCAGCAGTGTCCCCACAAATCCCAGCAGCCCTCTTAGCTTTAGCAGCCCCCACAGCCCTCCCAGCCGCAGGGTCCCCTCCAGCCATAGTCCTGGCAGCCCTTGAGGAAGCAAAGTCCCCAGAGGGCCCTGAAGCAGCCACAGTAAAGCCGCGTCCACCAGCAGCAGGGAGGTCCAGGGTCTCAGGTCAGGGAGCCGCATGGCTCTGTCAACGGATACGAGATGAGAAATCATGGGGGTGGAGTCCCAATCCTTGTCCCTGCCCTCCTACCCGCCCGGCTCCGCCTAACCCGTCCATCGGCTTCTCATTTCATCCTATTCAACCCTGAGAGCTCT-CCTGAGTAACCGGTGCTCATCCGTACACCCCTCCTACGACAGACAGCTTTCGGCCTTCTGGGGAGCTGGAAGCATGACCATCAGGAGCCTCGTGCTTAAAAAAAAAAAAAATCCCCGGACCCCCACCCC-CAC-------CCCCGCCTGCCG-------------CGGCGAGCTAAGTGGTCCGGGCTCCGCTCCCT-CCTATCGCCGGGTGCAG---AGGGACTGGGAAGCAGGAGCGTGGAGTGGGTAGTCACTTGGGCTGCGTTCCTGTTGGCGCTCCAGGTTCCCCTCCGCACCAACTCACCAGCCGCGGCGGGGAGACCGCAGCTCCGGGG-GCT-TCTGCTTC------AGCGCTGAGGTCCGCTCCGTCTCTCCCAACCTCGCTACCGGCTCTGGTCCGCCAGCTACGCTCGGCCAGGGCGGGCGTCAGGGCTCGGGCAGCTTTCGCTTTCGTTTCCCCAACCAAGGCCTTCATTCTGGGCTGGGCCGCCGGGAGGGGGCGCGCGAGACCCGCAGACAGCGGAA-------CTGGAGCCCGAACT-----------CTGGTTCGCACTGTACAGGCCTGCAATGAGTCTCACTCGCCTTTAGTGGCGGTTACTCTGGGATATAAAA---CTGCAAAAATGTTTCTTTATCATTAAGTAAAATACAGTTGTCTCAAGGGCAACTGTATCTGTTGTCCTTGCTTTGTAATTGGAGAATGCTTTGTAATTGGAGAATCACTGAATT-------------------TTCTCAAA--GTTACTACTTCAAGCTCTGAGCCTACTATTAAGAAGTGCCT s canFam2.chr12 5419373 1782 + 75515492 CAAATATGGATTGGAAGCATGATTTGGTAAATACAGGGATTGAAAGAATGAATGGATGAGTGTGTGAAATAGAATGGTGAATAAACAATTCACACGTATTTTA-----AGTATTTT-ATGCTTGGTGTACAAAAAGGATCTGAAAACAGAGCTAGGAAA-CGGACAGCCCTGTAAAGATGAGGCGCTAGCAAATGGGTCCAGCTGAGCATCACCTACCTTCCAATGGAGAAGAGGCACATGAAAAAGATGGCGGTGGCAAAGGCGTCAGGGTTGAAATCACCTCTCAGGATATCAATGACACGACCAGAATAGTAAGGGATGACCGTCTCACCTGAGAGAGGTATGGAGGAGAACAGATGACCGTGCTGGCACCAAGGGCCCTTGCCCACCTCCGGTCCCCAGTGCCCTCTTCCTGACTCACCCAACACAGCGACAACAAGGAAGAAGAAGGCTGCGACGAGGTAAGGCAGGTCTGGCCAGGAGAGCCTCAGCAGCCTCCACATCAAGTCTGTGTTCTTCTCCTGGCCCTGCTCCCCCTCCCGGGCTTCCGGGGAGCTCAGCAGAGCCCACATTGCCCAGCTCAGCCACGCAGCCCCGTACCCCACCAGCCGCCCGCTCCAGGGGGCTGCAGCCACTCCGACTAGGGGGGCGCTCAGGAGCCCTGGGACCAGGGCCCTCAGGGAGAGGAACAGCGGAGTCTCCAGGCAGAGCGGGGGCAGCAGCGCTCCCACCTGCCCCAGCAGTCCTCCCACTTTTAGCAGCCACCAGAGCCCCCCAAGCCGCAGGGTCCCCTCCAGCCACAGGCCTGGAAGCCCCCGGGGAAGGCGAGCGCCCAGGGTCCCCTGAAGCAGCCAGAGCAGAGCCCAGTCAGCCAGCAGCAGGAAGGCCCAGGGTCTCAGGTCAGGGAACCGCATGGTGTTATCTAGGGGAAGAAGATGAGCAATTACAGAGCTGGGGTCCCCATCTTTGCCCTTATGCTC--ACCACCCCGACTAGGCCCAGCCTGTCCCTCGGCTCCTCATTTTACCCAGTCGTACCCCAAAAGGTCCGCCTGCGTCCCCGGGGCCCATCAGTACGTCCCGCTTATGACAGAAGGCACCCGGCCTACGGAG---------------------GGAGCCTCGTCCC------GCATCAAATTCCCGTGACCCCCTCCCCGCACGCCCCTGCCCCGCccgccgccgccgccgccgccgccgcGTTCCGAGGAGCCGCCTGCGCTccccgcccggcggctggcgctgcccgggggcccggagagggggccgtgg---gggcgcccAGC--GGATGCGTG--GGTCCGCGCTCGCGGCTTCCGGCCGCACCGACCCAC---CCGCGGCTTCGGGACGGCAGCTCCGGAGCGCTCTCCGCTACGTGCCGAGCACCGGGCTCTGCAACGCGCTCGCCGGGCTCACCTTCGTC-----CCCGCCGGCGACACTCGGCAAACTGGGGCGCCCCGCACCCAACA-CTTTCACTTTCGCTTCCCCAGCCGGGGCCCCGGTTCCCAGCAGGGCGACCAGCGGGGGACGCGCGACACCTGCCGGTCGCCGAAGCCCAGTGCGGAGCCCGCGCTCGCTCGCCACgccgggccgggccgggccgggccgC---GAGCCTCCGGCGC--TTAGCAACAGTTACTCCGGAACAGAAAGCTCCTGCAAGGGTTTTAAATTGTTATTAAGTGAAATAAAGCTATTTCAGGGA------------------TTGC-------------AATGTTTTGTGATTGGAGGACAACTGGGTTGTCTTGCCTCAAGCTCTGATTCTCAAGCTCTTACTGCCTCAGGCTCTGATCCTG-TGTTGAGAACTGCCT a score=12647 s hg19.chr6_ssto_hap7 4237974 391 + 4928567 CCTCTTCCATGCAAGCTCCAGTTTTAGG---------------------------CGAGCGAG-------CCGGGCTCTCCTAAATAGAAGGTTCCAACCAATCTCACCA-GGCCAAAGGGGATTTTCAC--GTACAGACTTTGAATTTAGTAGGCCCTGAG--CGTTCATCTTCATCCGTCCTTCTCAGCCGGAGCACCTTGAGCTG-GCGCGTGTTCAG-GTGCCTCTGAGTCTGTACTCCAAATTATGT--TGGGCGCACCTTCAGCCTATGAGGGAAATGCCCGGTACTGGGCTTTGGTTCTTGTTCTATTTTAACACTGTTTAGAACAGTAATTAGGTTTTTAAATATCCTTCCTGTCCCAGAGCCTTCCTATGCAACAGAAAGATTCGTTTATTCCAGAAAGGACTCTTCAGATTGAAACCACCTCCC s canFam2.chr12 5421155 413 + 75515492 CTTCCTCCATCCAGGCGCCAGTGTTAGGGTCTGGGATCAAAACAGAGCCAGATTCTGAGCGAGAAACACTCAGATCTCTCCTAGATATAGGGTTCCAGACACGTTCACCAGGGCCTAAGTGGGTTTCCACTTGCACAGATTTTGAGCTGAA-AGGCCCTGATTCTTTTTATCTTCATCTGCTCTCCTCAATACG-GCACCTTGAGCAGAGCACGTGTTCAGAATGCCTCTAGGTC---GTTTCAAATTATGTTCTCGGAGCACCTCTGTCATATGAGGAGAA----------TGGACTTTGTTTCCTGGTCTATTGT-ACATT-----AAGCCCTAAACAGGATTCTATAGTTCCTGCCTGACCCACAGCCCATCTATGGAACATGCTGGTTTGTTTATCCCAGAAATAGCTCTTCAGATTGAAACTACCTCCC a score=55681 s hg19.chr6_ssto_hap7 4238365 1392 + 4928567 AAACTAAAAACAAACAAACAAACAAA--------------------------------------------------------------------------------------------TTCCCCAAAGGAAGGGTCGCTTGGATTCCAGATCACCATTTTGAAATGTTACCTGTGTGACTACCAAGGAGTCACTTAAAGTTTAAAATAGTGGTGGTGGGGAGGAGGGATTTTAAGTAGGGGCTCGCTAAAGTTTTACAACTCTATTCATTCTGGCATTTTAAGAATCTCTCTCTAAT--------------------GAAAAAAGCTCCATGCTCAA--GCTCATGCTCCTACTTTCAAGCATTTG-TTTCCTTTATTTT--CTGGAAAGTGACATGGTCCAT---------AGTTCCAGCATGATTCCGAAAATCTCATGATGTGTGTCTCTTTCTTCTAACCTGGATCTTTTACATTTTCCCCACACTCCTCACTTAGGGGAGTCCTCCTGATCTCTTCTTCCTCTAAAATTATAGTCCTGCCATCTTGCAATTCAGCATGACACATCATGAAATTAGACCCTTAATGTCTGTCTTTATATTCAATATCCAATATCTCCAAAGTGTTATTTGGGATAAATGGTATGGTGTTTATATGATTACCATATTAAAGTGAAGTGGAAGCTTTTTCATCCTACTCTATAAAGTCAAAAACAGTTATCCTAGGTGCCCTACTCCCTGTTCCTCAAACCATTAACAATGGAGCACACAGGAGTCCCCAGG-TGCCTCTCTATGGAAAGGACCCTAACCTATGTGAAATTGCAAACAAGTGTCCATGGACAGCAATGAGCAGCCTTCCTGAGGTCTTGGAGAGATGAGTGTGGAAGGAAACCCCAGGAAGAACTATGTGGTGAGGCCACATTTCTTAGATAGGGGTCTGAGCCCCTTCTCCAGAAAAAGCGTCTCTTTACTTTCTGCCCCACCCAACAACCACAGGCCCAACCCCATTCAGCCACAAGACAGAGGTATTTATAACCGTTTTTCTTTATTCTACTTAGTGGGGCACCCAGAAACTTCCCTGGGGGAAATGCTTGTTCAAAT-AGAGAACACGC-AGAAGATGCACTTCA-CCGGCCTCCTCTGGCTGCTGAGCCCGTACTCTCTCTT-TGGCTCAGGCTAGGCCTCTTCTTCTCCTTGGACTTAACGTGGCTTAGGTCCCTGAGTCGGCCAAGACCTCCCAGAGGAGACCTGCCCAGCTGCCACCACCACCATTATTGATTGGCTTCCCGGTACTGGTGCAGCAGGTCACTGACATCTGTACTTTCTACTTTCACCCAACCATCTTCCTTCATGTGGTACACTGTGGACAAATGAGAAAAGAACATGGAGTCACCTTTCACCTCAGCAAGTTCCTGTCACTGATGTTATGTTGAAGGCAGCAACAAGACACATGCGCAAGCTTA----------AAACCATATGACTGGGCCTTTAATGCCCTTCTTCTGACTCTGAAAATTTCCTCCCTA s canFam2.chr12 5421844 1483 + 75515492 aaagaaagaagaaagaaagaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaagaaaaaagaaaTTTGCCTCTCCAACTCAAAATATCCCCAAAGGAAGGATCACTTGAATTCCAAACCACCCTTTTGAAATGTTACTAGTATGTTTACCAGTGAGTTCCTTCTAGTTTAAA-----GGCAGGGGTGGAGGGGTATTTGAAGTAGAGGATTATTAAAATTTCTCCAACCTTGCCATTCTGGGATTTTAAGAATCTCTTCAAAATGGGGGGTGGGGTGGGGGTAGGAAGCAAGCTCTGTATTCAGCTGCTAA-----CTACTTTCAAGTTTTTTCTTTGCCTCACTCTCCCTAAGAGGTGACATTGTCTGTGCTCCTTGCAGCTCCAGCATGATTCAGAAAACCTCATTATGTCTGTCTCATTTTCCTAACCTG-----CTTACTTTTCCCTCATATCTCCCTCCTCGGGGAGGCAG-------TCCTCTTCCTCTTCAATCATGGTCTTGTCATCTTGCAATTGAGCATGACACATCATGAAATTGAACCCCTAATGTCCAACTTTGCATTCAATATCCAGTGTCCCCAAACTATTATTTGAAGTAAAT-GTATCATGCTTACA--ATCACCATAGACATGTGAAATAGAAGCTTTTTCAGTGGACTCCACAAACTCAAAGACAGTTGGTCTA-GCACTCTACTCCCAGACACCCAAACCATTAATAATGGACCACACAGGAGTCTTCAGGTTGTGTCCCTATAAGGAGAACCCTGACCTAAATTAAATGGCACGTATGTGTCCACAGATCT---TGACTGACCTTCCTGAGGGCATGGAGAAATGAGCTCGGAAGGAAAACCCAAG-AGAAATATTTGGTGAGGCCCCATTTCGTAGGTTGGGGTTCAAGTCTCTTCT-CAGGGAAAGCCTTTCTAT-CTCCCATCCCCTTCCCACAATCCCAGCCCCAACCCCACTCACCCAAGACACAAATGAATTTATAACCATTTTCCTTTATTCTACTTAGTGGGGCACCCAGAGGGTGGGGTAGGGGGGA-GCTACCTGAAACAAGAGAACACACAAGAAGGTAAACTCTATCCTACCCCCACTGGCCCCTG-----GTTCTTTCCCTCAGGGCTCAGATTAGGCTTCCCTTTGCTCTGGGGTATAAGCCAACCCAAGCCCCTGAGTTGACCAGGTTTTGCCAGAAAAGGCATGCCCAG------CCACCCCTGTTACTGATTGGCCTCTTGGTATTGGTGCAGTAGTTCATTGACATCTGTACTTTCCACTTTCACCCAACCATCTTCCTTCATGTGGTACACTGTAGGCAAATGAG-AATGAACATGGAGTCACCTTTCACTT---CAAGTTCCTGTCAATGATGTTATGTGGAAGATGACAACA--TCATAGGCCCAAACATACCCTCAACACATACTTTATTACTGACACTTCAATGCCCCTCTTTGGATGCCAAAAACCTCCTCCTCA a score=211062 s hg19.chr6_ssto_hap7 4240044 4846 + 4928567 CTCCCAGGCATGGTGGTGGGAGCATTGGTCTCTTACTATTGACAACGCCTCCAGAATAGCTGTCTCTGTGAGTGGCATAAGCAATAGCCCTGCGGCCAAGGTCATAGGCCTCTTCAGGGCTAAGATTAGGCCGATAGCCACTGTCCATGACCCCGTAGGCATAAGTGTTCCCACTACCCGTGGAGAACATATTTCCTGAGAGCCGAGTCCCATGTTCATCCACGTAGTAGAGTCCAGGACCCTATAAGATGAAAGA---TTTCAGGCTGAAATTGGAGAGGAAGATGTTGGTAACATGGGGGTTCAAATATGAGACATAAAAAGTGAACAAAAGAATTAATATTACCACAAGAACATTGGAATTAGGAAACCACTTTGGTAA-AGTCATCGAACTTTAGAAATGAAAAAGGAAAAACAAACTTGAAATCAACTGTTT-AACAAAAGGGACAAGCTTACAAAACACATGCAATGATTCATATCTGGGCCAATAAATAGTCCATGGATATACTGAAACAGTTCTATAACCAAGCACTCTATATGCCATGCATCTTGTCAGGGAGGGAGTAGGAGTATATGATGGGAAA-CAGATCTGTCATCCATAGGGAACATGGTGGGGGAACATGAAGAATGGAGAGCACCCACCTTCTTATCCCAGCCACAGATCATACTGCCCATAGAGAGGCCCATGCCCCGGTACTGGCACATCATGTTGGACAGCAGCTTGGAGGCTGCCGACACTGAAATACGTTCTCCATTTCGCAGATAGTACAGCCTGGGTGAGGACAAGGTGGAGTGA-----------------GGAAAGAG-AGGTTAGCTCTTT------CCAACTTGATGGGGCAGGAAATGATTAAAGAGATAAGCATTGGAAAGGAATTATTTTGTAGGATCTAAAGATCAGAGAAAGATTTGGAATTTAAAGTATCTGAAACATACAAAGGCAGCCTAGTAAATGATACTGTCCCGCCAGGGTGGATG-TGTCAGTGCTAAATACCTGACGTACTATCTGGCTTATGAGTGGAGCACAGGCTGAGATTTGGGAGAAGGGTCTT-ATCACCAAAAAGCTGTTTTGTGAAATATACTATTAGCACTAAGATGGACCACA-TAGGACAAGAG--------TAAGGAGCAATGATCTGAGAGATCCAG------GGATTAACCACTAGGCTAAGAAAGGAAGATGAGAGGCCTCACTTACCTGCATTCCTTGGCCAGCAGGCGCTCCCAGTACTGACAGTCTGCTGCACAGCCAGACATGGTGCCAAGCAGGTAAGGGTTAATCTCAATCACCTTGTTCACCCGTAAGGCACCTGGAAGAAGATGGAGCTTTGGGAGAGAAGGGATGA-CCCCATAGATCCCCCAGTGTGTCCTAAATCAATATCCACTTCCACTTTGTTGCAGA-GTTGGCCTCCTGTGGAAAGGAGAGCCCAGCTCCCCAGATTCTGCCTGCTGGAGCGTATACACTCACTAATGTAGGACCCAGCTGAGGCCCGAGAATCCACTGCTGCAATCACTCCATGCTGGAACTTGAAGGCGAGCGTGGTGGTGCCATGGGCCATCTCAATCTGAACGTTCCTTTCTCCGTCCCCACCCAGGGACTGGAAGAATTCTGTGGGCTGATAAGAGAAAAGAGGTTGAGAAA--GGCAATGAAAAATTCTGTAGTAAGAGGCTCCAGGAA-----AAGGTTTTA-GGGAGTATGAGGGTGAGGAGATATGCAGAAATGATCTAACCATCAATAAATGAAACAGTTAATAACCAATCTCTAGAAGGAAATGGCTTGGGAGAAGGAAAAGAAGAGGCATGCCAGTATCAACCTTTTCCATTTTCCAGCACAACAGAAATGAAAGCAAGCACATGTT-ACCATTACTAAAAAATTTTGAGAGTGACTTAAAGG-----GTTTCttccatgcataaagcattcaaccctcacaaaacacgt-ttagtaacagtat--cctcactttacagaagaggggcttgggacctagactaagtgacttgttctaagtcgcgcaacagtgagttgctgagaggaggccagcaggcaaatttcATAGGTTTCCCAAGACACCACACACCTCCTATATCATGTGATAACCCCATGAAAAAGGCTCCACCATTTGTGTGTGGACAAGGGCAGGGAAGTTCTCTTGTCTTCCTTTGGGAGCCC-CCACCTCACCTGTAACTCTTTGTCCTAACTTGCACT--TCCTC---CTCTCAGGCCCCATCCCCATGTGGCCTCTTCTTTGGGTCTGG---------CGCTCTCCGGGACTGAAGGCTACCCCCGACCCTGTACCCCGCGCTCCCGCTCTCGCCTCCTCCTCTCAGGCGACCCTCCACTCCTCAGCGCCCGCCTCCCTGCATCCCTA-----------GGGGCTTCCCTACT---------------GCCCCGACCTGCATTCCCCGGGGTAAAGCGAGCTCTGGAGATCGCATAGAGAAACTGTAGTGTCCTGGGTCCGAGCGACGCCCGCTTCCCGCAACCGGGAGAGCCGATTCCGGCCGCTGCCCTCGGGGGGCTCCGCATACATCTAGTAGCGCCATGACCGCCCAGCACCCAGAGATCTGTCCGCTCTCGGAGGAGGAAGTGAAAGCGAAAG--CCACAGATCGAAGGGGAGGGAACAAGACTCTTTTCCACATCCCCCTGCCTTTTCCGAGAAAAGGACAGTTAGTGCCTG--GACCAGGACCATCACACTGGGGACCGGCTTCTCTGCTCTCCCGTTATGGGGGTCGGGGGAATGATGGGTCAAGGGTCTTCCGAAGAAAGCGAGA-AAGGAACAGGCGCCTTCAAAAGCCCACTTGGCGATGGGTTACAGTAAGAGGTACCTCCAGGC--CCGGGCATCCGCTGGAA-----ACAGGGGTGGGTAGGGTCG-TGTCATCTAAAGGC----GCAGCTTCAACCAGAAGACTAGAAGTCAGCCAGGAGCTGGGAGTAGTGTCAC--GCGGGGT---GGGGGTTCCTATGAGCATCACTTTACAAAACCAGGAGGGACGGAAGTGCGAGGGGGCA--GAGTCTTGGAAACAGGTCCTGGGCCAACT-GCAACAGAATATACCCGCCGCGTGTAGGGGAAGGCGGCGCCAGGGAGAGGGCGCAGTCTCTGAATCTTTCCACGGGGTCCATCCTAGGGCCCCTCCAGGTTCAACGGTCT-CCTAACCTGTAGTCACCCACAAGAGCGTGCCCTTTCTGCCCGCCCTTCCTAGCGTTGCTCCCTGCTTGGCTGAGCACTGCGGAGTTTCACGCCTCTAAACCCCGCCTCTTCTTGCAACCTGTGTTGGCCTCATCTACCCAGCAACTGTCGACGTCACACGACCTGGGCCTCCCTGAATGGGAGATATTTACTAGGCAATCCCGCCTACTGTTCTGAGGTTTCCCCTCCAGGTGCAGCTTCAGAGCCAGGCGAGCC------AGGAAGGACCA--GCGGGCGAGGTGGTGAGTTGTGAGGCGCGCCCAGTCCCTCTGTTCCCGC-CTGGCACTTGCTCTGGCCGCGCCCGCCCCATCTGCCACTTCGGAGAGGCCACGGCTCT---GAGCTGCGGCCGCTAGTGCCCTGATGG-GCCCTGTGGCTGGGGTCTTGCACATTCTTGGGGGTGGGCCTAAGGGGATAGGGGAAGTGGAAGGGGC-CTCATAGGAATTAAAAAGCTTAAGGGAAAAGGTGATGCAGTTAGG---GGGTAAAACATTGAGGATGATAAAAGAGGA-GACACCCGCAGCTGAAAAGTGCGCTGCAAAAGGCAGTGGGCCGTTTGGTGTG-------------------------CCGGAAACATAAGAAACCACAGTACAAAACAC------CAATTTTATTATAAATATCAAGAACCTACAGGGTGTTTATGGGCCAGCATATGCCTTCAGTTATGTT-GAAAATAGCTGATCATC---TTTCCGTACATTCTGAACATTTCTCAGTTTCAGAGTGCTGGCCACACCAAAGCATCAGCCCTGGCTCTAAACTCCGTTACAGTAAGGAATTACAAATCCTGTGTTTGTACTCCAGGAAGTCTGCATTATCACGAGGAGCTTGGAAAGGAGGTAACACACTCAAGGCA-AATTTCAAGTA------------------------------ACTCATCCTGGAGGCAGCTGCCTACTCTGCAGCTGTGG-------------------TTCTCCACCACAGAGA-GAAGAAAAGGGAGGGAGATGGAGTGCGCAGGTCTGAGAAGGCTTTCATTCTGGAGCATCTG------CAGGAGCCTGCACCATGGCCCAGTAGCACCCCTTTTTCTCCATGAGCTGCTGGTGGGTTCCCCCCTCCCGGATAGCGCCTCCTTCCAGAAAGAGGATGTGGTCAGCCTGCTCCACCAGGCTGAGGTGCTGGGTGATGAGAAGCACTGAGCGGGAGTACCGCTCAGGGCTTTCGTACAGGAGCTGCTCCACCTGAGGAAAGACATCGGACCGTCAGAGCCGGGGACTACCCTCAGCCCAGGGAGACACCTGTGTTTCCAGGGCTGGGACTGACCTCA-CAGGATCACTGCTGGCTCTGCTAACAACCCCAAGGACACCAACGTTTCCCATTCTGAGTACTTCTCCGCAAACCCTTTGTTTCATTAAGGACTGTTTTACATGAAGGGTGCAAAAGTAGGATAAAAA-TGAGAACCCTAGGGTGAAACACGTGACAGAAGAATAAAGACTATTGAATAGTC-CTCTTCTCTACCCATGGACTTGGCA--------------------TTTTTATATTCGATTTT-AAGGAAATATAACTTagtagtaaagag-atgagcattcaagtcaggcagacctgaatttgggtcaaggctgcgccactcaaaagctatatgacctctatatgagcagcttattcaacctcttttaacctccattttgtcatctgtagaatgatgata--aatg-cctagctcagaaggattcctaatgaataaatgagt--gacagt-------------------gcatgt-------------aaaCAG-ACTAGCTTAATTAATATTAATATGATTAGGATGg s canFam2.chr12 5423677 4978 + 75515492 TCCCCACCCAGGAGGGTGGTAGCATTGGTTTCTTACTGTTGATAATACCGCCAGAATAGCTGTCTCGGTGGGTGGCATAAGTAATAGCCCTGCGGCCCAGTTCATAGGCCTCTTCAGGGCTGAGACTGGGCTGATAGCCACTATCCATGACCCCATAGGCATAAGTGCTCCCACTGCCAGTGGAGAACATATTTCCTGAGAGCCGAGTCCCATTTTGATCCACATAGTAGAGTCCAGGACCCTATAGGAAGCAAGAAGTTTCCAAGTTGGAG-TAGAAAGGGAGTTTTTAGTAACTTACAGGTTCAAGTGTGAGCCATAAAAAGTGGATAAAAGAATAAGAACTACC-CAGGAACATTTGAACTAGGAGAGCACTTTAGTAACAACCATAGAACTTTAGGGG-GAAAAAG-----------TTGGAATCAGCTATTTCAAAAAAAGGAACAAGCTTACAAAA------CAATGGTCCATATCTGGACCCAGAAATAGTCCATGGATATGCTGGAACAATTCTATGACCCAGTGTTCTATGTGCCACCCATCCTTTAAGCGAGGGGATGGAAGTGTATCATGGGGAATCTGGTCCCTCATCAGTTGA---------GGGGGAATATGAAGAATGGAGAGCACGTACCTTCTTATCCCAGCCACAGATCATACTGCCCATGGAGAGGTCCATGCCCCGGTACTGGTACACCATGTTGGAGAGCAGTTTGGAGGCTGCTGACACTGAGATACGCTCCCCGTTCCGCAGGTAGTACAGCCTGGGT-ACAACAGGGTGGTGGGGGCAGCAGATTCAGAGGTGGCAGGAGAAGGCTAGCTGTCTGAGCAGCCCACTTGAT-GTGCAGGAAATAATTAAAGAGACAAGCATTTAAGAAGAATGGTTTTG----------GGATCAGGGAGAGATCTGGAATTTAAAGAATCTAAACCACATAAAGAAATCCTAGTAAATGACACTGTCCCACCAGGGTTGATGATGTCAGTGCTAAATAACTGATAAATTATCTGGCTTATTGGC-AAGAGTAAGCTGAGATCTGGGACAAGGTTTTTAATCACCAAAAGGCTCTTTTGTGAAATGCTACATTAGTACCAAAATG--CTACATTAGCACAGGGGCGAAAGGATGAGCAGCAGTGATCTGGAGGTTCCAGGATCCAGGACTGACCACTGGGCTTAGGAGAGCA-ATAAGAGGCCTGGCCTACCTGCACTCTTTGGCCAGCAGACGCTCCCAGTACTGACAGTCTGCAGCACAGCCAGACATGGTGCCAAGCAGGGAAGGGTTAATCTCAATCACCTTGTTAACCCTTGAGGAGCCTGCAAGAAGATGGAGTTTTGAGAGAGGTAGATTGACCCCCACAGCTCTCCCTGTGTGTCCAAAATCAGTATCTTCTTCTGCTTTGGTGTAGATGTTGGGTTCCTGCTGAGAGGCGC-CCCAGCTCCCCATATTCTACCGGGGGGAACACACACACTCACTAATATAATTCCCAGCAGTAGCCCGAGAATCCACCGCCACAATCACTCCATGCTGGAACTTGAAGGCCAGTGTGGTGGTGCCATGGACCATCTCCTTCCGAATGTTCTTTTCTCCATTCTCACCAAGGGACTGGAAGAATTCAGTGGGCTAATGAGAGAGAAAAAGCAGAGAAATGGGCACTGCAAACTTCTGAAACACAGGGCTCTAAGAAAGGATAAGGATTTACTAGGATTTGGGAGTGAGAAGATAGGCAGAAATTCTCCAACCATTAACAACCGGAAGAGTTAATAACCCATCTCTACAAGGATGTGACTTGGGAAAAGGAAAAGAAGCAGCAGGTGA-CGCCAGCCTTTTCCATCTTCCAACTCAATGGATAAGAAAGGAAATAAATGTTAACCATAACT-AAACATTTTAAGGCCGACTTTAATGCTTTTTTTTtttccattcataggtcatttaaccctcac--aacacgtcttattaataatatccccccattttacggaagcgacgccccagacctaaatgaagtga-ttgagccaagacacacaacgttgagtggctgaga-gaggccaacagtcaaagttccccggt---ccgaggcactccacagcccCTAGAGCAAAGGAAAGCCCCAGGAGAAAGGCTTGGCGAT----------------------------TCTGGTCTCCCTCTGGTCTCCCTCCACCACACCTCCAACTCTTTGTCCTAATCTTTTCTAACCCTCAAGCGGTCAGCCCCAATTCCCACGTGGCCTCCTCCCTGGCACCGGGTTCTGGAAGGTTCTCCTTCACTAAAGGATGCCCCC-------TCCCCTGGGTTCCCGGCGTCTGGGTGGTCTCAAGGGCGACCCTCCACTCCTCTGCGCCCTCCTCCCCGCCTGCTAACACACACACACGCCCCTTCCCCGCCCCGGTTTGCTTCGGAGCCCCGACCTGCATTCCCCGGGGGACGGCGAGCTCCGGAGCTCGGAGGGAGAAACTGTAGTGTCCGGGGTCCGAGCGCAGCTGGCTTCCCAAGGCGGGGACAGCGCAAGCCTTCCGCAGCCCTCGGGGGGCTCCGCACACCTCCAGCAGCGCCATTGTCGCCGAAGGCCCAGAAATCG--------TCGGAGAAGGAAGCGAAAGCGAAAGCCCCGCAGCCCTAAGGGGAGGGAACCAGAATTTCTTCCACATCCCCCTGCCCTTTCCAAGAAGAGGCCAGTGGGCGGCTGGAGACCAGGGGTATCATACTGGGAACAGGCTTCTCT-CTCCGCCCTTACGGAGGTC-GGGGAGCAAAGCGTGATAGACTGTCAGAAGAAGAGGAGACGGGGAGCGAGCGGC-TCGAGAGCCGCCTTGGCGCGGAGATCCCGGTGGGCACACCAGCACGCCACCGGGTGACCCCTGGAGCGGCTACGACGTGGGGTGGGGCTGTTACCGCCCCAGCGCTTAGTTAGCCTGGACCAGAAAGCTGCGAGTCAGCAAGAAGCTGGGGGCACTTTCACCTCCGGGGCTTGGGGCGTTCGTAGGACCATCATTTTATAAAAGTCGGGGAAAGAGGAGTAGGTGGGGGCAGTGAGTCTTGAGGGCAGGTTCTGGGGCAACCGGCAGCAGAATATACTCGCAATGT---GGGGAAGGCGGCACCAGGGCGAGGACGCAGTCTCTGAATCTTTGGACTTGGTCCTTC--AGGGCCTCTCCTCGTCCAACGGGCTCCCTAACCTATGGCCACCCGCAAGAAC-CGCCCTCCGTGCGCGCACCTCCTCGCAGGACTCTC-GCTCCTCTGAGCGCCACCGAG--GAACTCCTCTAAACGCCGCCCCTCCTTGCAACCCGGCTGGGCCTAACCTACCCGGCAACTGTTGACGTCACACACCGAGGCCCTCCCAGAATGGACGAGACTCACTAGACAACCCCGCCCATTATGCTGAAA-GGACCCGGCAGGTGTCACTTCTGAGAGGGGCGAGCACTCCGGGGAAAGGACCAGGGCGGGGGAGGTGGTAAAGT------------CAGTTTCTCGGTCGGCGCGCTTGCACTTCCTCTAGCTACGCTCACTCCATCTTCTACTTCAGAAAGGCCAGGGCTTTCTGCAGCTGCAGCTGCTAGTGCCTGGAGGGTGCCATGTCCC---ACTCTGGTTCA-TCCTAAGGGCAGACGTGGGGGCAT-GGGAAAGTGGTGGGGGCAACCGTAGTAAACAGAAAACTTAAGGGAGGAGATGGCCCACTTAGGACTGTGAACAGCATTGGGGCTGCTGAAGGAGGGCGACACCA------GAAAAATGCATTGCAGAAGCTGATGAGCCATTTGGTATGGTATGTTGATGAGCCATTTGGTATCCTGAACACATGAGAAACCACAGTACGAAACACCAGTATCAGTTTTATTATAAATATCAAGAATCCAGAGTGTG-TTATGGGTCAGCATATGACTTTAGCCATATTGGAAAGTAGCCGATCTTCCCTTCTCTGTACCTATTAA--AGTTCTTATTTTCGGGGTTCTATCAACACCAA------AATCCTGGCTCTACACTCAGTTACACTAAGGTGTTCTAGATCCTGTTTTC---TTCCAAGAAATCTGCATCATCAAGAGTTGTTTGGAGAGGGCGCA--ACACTCATGGCAGAATTTTAGGTATCAGTTTATGGAGCTGTGCTCTAGGATGTCACTCCTCCTAGAAGCAGCTGCCTCCTGTGCAGCTCTGGTAAGCCCTTTGTTCCCAAATTCTCCATCAGAGAGGTGAAAAGAAGGGAGGGAGATAGCCTATGCAGGTCTAAGCAGTCTTTCATTCCGGAACACCTGACCCGCCAGGAGCCTGCATCATGGTCCAGAAGCATCCCCTCCTCTCCATGAGTTGCCGGTAGGTTCCTGCTTCACAGATGGTGCCTCCTTCCAGAAAGAGGATTTGGTCAGCCTGCTCCAACAAGCTGAGACAATGGGTGATAAGAAGCACAGACCGAAAGCGCCGCTCAGGACTTTTGTACAGGAGCTGCTTCACCTGAGAAAAGACA-CAGACT--------------CTGTCAAGAGCCCAGGGAGACACCTGTG-TTCCAGAGCCCAGACAGCTCTCACCAGCATCACTGCCACCTGTGCCAACAGCCCCAAAGA-ATCGAAGATTCTTGTTCTGAATGCTTCTCTGTCTGACTTTTGACTTATTAAAGACTA-TTTACATGAGGTG-GCAACAGTAGAATAAAAGTTAAGAGTCCTAAGATGAAACCCATAAGAAAAGAGGGAAGGGTATCAAATAGTCTCTCCTCTCTATGTATAAACTGGGAATTTTATATTCTGTTGTATTTTTTTTATATTCTGTTTTAAAAGAAACATAACTcagtggcaaaaagaatgagcattcaggtcaggcaggcttgactctgggtccatgctctgctactcaacaactcaatgacat-----tgagtaggtcattcaacctcttt--gtcccctttttatcctctatagtatgaggataacaatgccccagctcacaggcattcacgatgaataaatgaatgagatagtagaaagaaagggcttagcagcatgtctggcacacaataaAAGAGTAAGAGCTCAACTGACATTAATGTTATTAGGATGG a score=2481 s hg19.chr6_ssto_hap7 4245033 47 + 4928567 ATATTATGAGGATGGTCTTTTCCTTATGTTTCGCTTTAGAAATTCAG s canFam2.chr12 5428839 44 + 75515492 atataattaaGATGGTCTT---CTTATGTTTGGCTTCAGAGATTTAG a score=38707 s hg19.chr6_ssto_hap7 4245405 835 + 4928567 AGTTTGTAGATAGTCTCTTTTAACTGATTCTAGGTGTCTTTGCCTCGTCTTCTATCTCTACTCCTTGGGGAGGCATCCAATGGAACTGGATTTGGGAACTGAGAACTGCAAGGACTGGTTTGTATAATTATGATGTTAGTAAAACTAACAGAAGATGTATAAAAGAAGCAAGATTGGGT-----GGGATA---TAGCCATTAAGAAGATGACTGCCTCACCTGTAACTGGCTGTTTGCATCCAGGGCACTGGTGGCATCATCCAGGATAAGTACACACGGTTTCCGGATCAATGCTCGGGCCAACGCCACTGCCTGTCGCTGACCCCCTGACAGCTGGCTCCCAGCCTCGTCTACCTCTGCAGAGCAAAGGGCCAAGATGAGAACGGTATAGCCACATGTGTGcacgcatgtacatgcacacagacacactcatgcattcacgcactcacacacacCAAGATCTGACGGTTGTAGCTGGATAGGGGAGATTCTGGGAAGATGAACAGAATCCTGAGGATGTCAGGATGAAGAAG-CCATAGGAGCATGATCTTACAACTTCAAATTGATGTCCATGAGTAAGGAGGAACTGAAGGATAAAGGCAAGACTACTGGGGTTTCAGCAAAGGTAAAGATGGCTGGGTGGTGAGATGAGTGGAGAGAGTACCTGTGTCATAGCCCTGAGGGAGTCCAGAGATGAAACTATGGGCCCCAGACTTTACTGCAGCAGCTGTGATTTCCTCCATAGTTGGCTTCTGGGTCAGGCCATAGGCAATATTTTCTTGAAGACTTCTTCCAAATACCTGTGGCTCTTGTCCCACTGCAGCCACCTGAGATGAAATATG s canFam2.chr12 5428883 729 + 75515492 AATCTTTAGACAGTCTCTTTGAATTGGAT----------------------------------CTTGGGGA-GCAGCTA------------TTGGGAACTGAGGATTGCAAGGATTGATTGAGATAATT---ATGCTAGTACAACCATAAG--------TGAAGGAAGGAAGATTGGGGAGGTAGGGATATAGTAGTCACTAACAAAATGTCT--CTCACCCGCAACTGGCTGTTTGCATCAAGGGCACTGGTAGCATCATCTAGGATGAGTACACGTGGTTTCCGGATCAATGCTCGAGCCAAGGCCACTGCCTGTCGCTGACCCCCTGAGAGCTGGCTCCCAGCCTCGCCCACCTCTGCAGAGACAAGAGCCAAGGTGAGGGCTGGATAACC-----------------------CACACACCTCCACATATACACTCACACA--TATACACACCAAGGACTGATGGATACAGCTGGATAGGGAAGGTTCTGGGAAGGTGAACA-AGTTCTG--------AGAATGAGGAAGCCCATAGGAACAAGATCCTACAGCTTCAAAGTGATGTCAGGGGGT-TGGAAGAACTACAGAATAAA--------------AGTTCCAGC------GAAGATGTCTGGGAGGGGATATGAGCTGAAAAAGCACCTGTGTCATAGCCCTGCGGGAGTTCAGAGATGAAACTATGGGCTCCAGACACCATGGCAGCAGCTATGACTTCCTCCATAGTTGGCTTCTGGACCAGGCCATAGGCAATATTTTCTCTAAAACTCCTTCCAAATAGCTGTGGCTCTTGTCTTACTGCAGCCACCTAGGACAAAATACA a score=93445 s hg19.chr6_ssto_hap7 4246243 1765 + 4928567 AAGAGTCATAGAACAAGGCACATGGGAGTATGGTTATCTAGAGATCGAAGACTCAAAATCTTTATTGAGAACATGTCACAAAATCATACTACCTCCCTCCTGACTACACCACCATCTCCACCCAAGGTCTCTTATCATTCCCTAACCCCTCTTTCAGAGTGCTCAGTAAGAATGCTC--------TTCGTATTTGATGCTCCCTGCCCTCCTTCAAGCCACCTGCTTCCATACCTGCCTGTGCAGGTAGCGGTGCTCATATTGGGGAAGGGGCTTCCCATCCAACAGCAGCTGTCCCCCGGTGGGCTGGTACAGATTCTGCAGCAGGGCAGCCACTGTGCTCTTCCCAGACCCATTGGGTCCCACCAGCGCCGTCACCTCGCCAGGGCGTAGGGTGAATGTCAGCCCCTAGAGGCCAGAGAAGCACACGATAAGAGGC-TACCAAGGCCTCTAACCTTGAGAGTGTCATTGCCTTGTTACATAGCATGATGTCTTACCCC--AGAAGAAAAACAGGGAAAT---------ATAGAAACTCCTACCCTCCCACATGCACAGATTTCT---------GGGTGATGCCTCCCCAAGGAGTAGAGATAGAAGAAGCAGCAAAGACAAGGGCAGAGACCCAGCACCACTATGCCACACACTTGATGTCAGATACCACCAGGAAAGGG---------AAAAATCACATTCCAAATTACAAAGGAAAAGGAA------AGATGGAAGACCGAAGACACAGATTTTGCTGCAGCAATTCCTTGGAACGTGAGAGCACTCTCTTCGA-AACCTCTTCTCTCAT-TCTCTTTGGAAGCCCAAACTGGGTTCTTGAGTTTGGGGAAGATTTATGGAACAGATGATGCCTACCATTGCCTTTAAAGG--------GTTAGGGAGGATATAT----GCTTGGCAGTAAGCAGGCTGAAGGCAGGAAGAAAATTTAGGATGGCAGAATTGCAGTTGGGGCCAGTGGAATACAGGGAGTGGTAGGTTGTACCTGTAGCACTAAGACATCTGGGCGGTTTGGGTAGGCAAAGGAGACATCTTGGAACTGGACAAGGCCCTCCAAGTGTAAGGGAGTCAACAGACCACTGGGTGGGCAGCGAGGGGTGCGGTCCAGGTACTCAAATATTTTCTCTGAGGAGCCCACAGCCTTCTGTACTCTGGGGTAGATGGAGAGCAGTACCTAGAGG-GAGGTAAGAATAGTGAAAGTGAGG-----TAGTCTGCTTGCCAGCATTATGTGAAGCAAGAAGGGTAAAGAATGGAAGGAC-ATCACACAGATGGTGCTGGGCCAGAGGAAGGAATCACACTGGGGAGTGAAGGTGGAGGGACCTCACCTCCACAGCCTGGGTGAACTGCATCTGGTAGAGAACAAATGTGACAAGGTTCCCACTGCTTACAGCCCCACTGGTCACCAGCTGCCCACCAATGTAGAGGATTCCCACTTTCAGCAGCATACCTGAAATCTATAAAGAGACCAC-----------AAAAAAAGGGACTGAGGTAGAGAAATCT-GGAGGGGACACAAAGAACCACAGTCATTAACCTGAAGGAAATATCAAGTCCCTGTCTCCTAAGTGACATCGGCAGGCTCAATAGGCAGACAGG-AGAATGAACCA---GAGACCCCATGGAGTCTGACTCAATGCACATCATGCAAGTCACAGTTATCTTCACCACCATCACCACTATCACCTTGTCTGGGGAGCATTTTACTCTTCACAAAAGGCTTTCATTCATGTGATGTCAGCTAATA--CATG--AAGAGCCTTATAAAGAAGGTTATATCACTCCATTTTTGAAAAATGAGGAAACAAC s canFam2.chr12 5429835 1817 + 75515492 AAGAGTCATAGAACAAGGAACATAAGAGTATGGTTATCTAGAGATTGACAACTCAAAATCTTTATTGAAAGCATATCACAAAAT--TACTCTCTCTCTCCTG---ACACC-CCATCTCCACCCACGGTC---TGTCATTCCCGGGTCCTCCTTTCAGAGTGCTCGGTGAGAGTGTTCAGTGAGAGTTCTCATTTGATGTCCCCTGCCCTCCCCTCTGCCATCTTCTTGCTCACCTGTGTGTGCAGGTAGCGGTGCTCATATTGGGGAAGGGGCTCTCCATCCAGCAGCAGCTGCCCCTTAGTGGGCTGGTACAGATTCTGCAGCAGGGCAGCCACAGTGCTCTTCCCAGACCCATTGCGCCCCACCAGCGCTATCACCTCACCAGGACGAAGGGTGAATGTCAGCGCCTGGAGGCCAGAGAATCAAAAAATAAGAGACACAGTAAAGCCTTTAACCTTGAG-GCTTCATTGTCTTATTACATGGCATGAGGTCTTACCCCTAGGAAGAAAGGGGGGGAAATTGGAAAAACATAGCAATTCCTACTCTCCCACAGGCATAGATTTCTGTTCCTCAGGGATGATGGCTCCCCAAGGAGTATAGATGGATGGTGAGGCAAAGGCCAGAGCAAAGACCAAGCACCACTATGTCACACCCTTGATATCAGATGTCATGAGAAAACAGAAAGAAAAAAAAAATCCCATTCTAAATTACAAATGGAAAGAAAAGGAAGAGATAGAAGAT--GAGAGGCAGATTTTGCTTTAGCAGTTTCTTGGGATGTAAGACTCTTCTCCCGGAGAGCCTCTTCTCCCGTCCCCCCTTAGAAATCCAAGCC--ATTCTAGAGTTTGGGGCAGTTGTATGGAGTAGACGGGGCTCATCTTTGCCTTTGAGGGGTTAGGAAGTTAGGAAGGATCTATCTGGACCTTGTGTTAGGCAGGCTGAAGACAGGACCAAAGTTTAGGATGGTAGAGGTGAGAGTGAGGCTGGTGGAAAACAAGGATTGGTAAGTTGTACCTGCAGCACTGGGACATCCGGATGGTTTGGGTAGGCAAAGGAGACATCTTGAAACTGGACAAGGCCCTCCAAATTTAAAGAAGTCAAGACACCACTGGCAGGACAGCGAGGGATCCGGCCCAGGTATTCAAATATTTCCTTTGAGGAGCCCACAGCCTTCTGTACACTGGGGTAGGTGGAGAATAGTGCCTGGAGGAGCGGTACAACTACTGAGAA-GAGGAAAACAAATCTGCTTGCCAGATTTATGTGATATGACAAGGATAAAGAATGGAAGGAAGGTGACACAGACGGTGACGAGACCCAGGAACGAAAAACCCTGGGTAGTGACAATGGAAGGCTCTCACCTCCACAGCTGAGGTGAACTGGATCTGGTAGAGAATAAACGTGACAAGGCTCCCGCTGCTTATAGTCCCATTTGTCACCAGCTGCCCACCTATGTATAGAATTCCCACCTTCAGCAGCATCCCTGAGATCTGTGGAAAGACCACGGGGGTGGGGGGAGGGGAGGGATTGTGGTTGAAAAATCTAGAAGGGGGTGCAAAGAAGCAGACTCATTAGCATTATGGAGATATCAAGTTCTTTTCCCCCAGGTAACAGCAGGAGGCACCACAGGGGTAAAGGAAGCATGCACCAGTGGAGGCTCCATGGAGTCTTGCTCA------------------ACTATGACTGTCCTCCCCATCACTGCTGTCGTCTTGTGTGAGGAGCATGTGGCTCCTCACAAAAGGCTTTTATTAATGTAATGtcatctactattcatagcaagaatcctacaaacaaggttatactattcccacttttaaaaatgagaaaacatg a score=224676 s hg19.chr6_ssto_hap7 4248355 5713 + 4928567 aggaaacagtctc-agagaaggtaaatttgttg-tcatgatcacaagacaagtaaattgcatcatcaagccaggatcttcggatcactggcgtagctctctttccagtgcatcacagatgtccctcATCCCTGGCTTCCACTATTCCCATCACTCTCACTAACAAATCTACAAGGTACCAGCATGAAGCAGTCCCAGGTGCAAGAATTTATGGCGCCCTGCACTTCCCCTGAGAGGCAAAGGAAGGCCCTAGGACTGGAAGACA-CGCATCTCTCCAATCCACATGGTTGGGTGGATTTTATGTACCATACTGAAAGGAAGCCACCTAGCATCTTT-AAAGAGAGGGAGGGGGCTAGGGACACTGAGTAGAGTCATTGAGCCTCAGGTTGCTAGGACGAAAATACTGAACCAACCATTTCCCAGTAAAGGAGGAGTG-GGAGCAGGGTC-ATAGGAATGGGAATGGAGTCACGGCATCTTAAGGACAAGGGAATGGGTATTCATCTTCAGGTGCTCACACTAGTGGTCCAGGAGTTGACTGCATAGGCCACAGCCTCCTTCTGGTTGAGTGTCTTTATTTCTTGCAGCTTTTCCCTAAACTTCTGGGCTTCGCCCTCCTCGTTGGCAAAGCTTCGAACTGTAGGCATGGCCGACAGAGCCTCAATGGCCACCTGGCTGGACTTTGCCAGAGATTCCCGCACCTGCACTTCCAGCAACTGTGGATACATGGACAAGAGATGTCACAC-GGGTTGGCAAACCATCAGGGACACTAAT---ACCTGAGTTACCTATTTGGAAATTAAAGGTGAGAAGAGACAGAGGAAAAGGAGAAAAGAGAAAGAGACACAGCTATGCCCCTTGGATGCTAAAGAAATACGAGGAAGAGGAAA--ATGACTCAGAACGGGT------------------------TGGGGATCAAATTCTTAAAGACAGATTGTGGGGAGAAGCTAGAAAAGAAGACCCAGAGAGTATGGAGGTTAATGTTGAGCAACCTGGGAACATGGACCACAGGGACAGGGTGTTCCATGAAGATGGAGAATCA-GTAAGGGTGCCAGGAAAGCTGGACTGAAAGCAATGTGAGAGGAACTGAGTCTGCCAAGTCTGGGAGATGAGGGTCTGTGTAGAGCGGGCCAACTCCATGAACATACCTGGTACCATTTTCCCACCTTCTTGGGCAGAAGGAAAAGCAGAGGCAGGGTGATCAGGGTGACCATGGTGAGGGACACTGATCCCCAGAGCATGATCCCCAAGAGACATAGGCCTCGCACCAGGTACCACAGAAATAAGCTCAGATTCTCACTCAGAGAATCACTCAGGGTGGACGTGTCCTCTGTTACCCGAGACATGATGTTACCTGC--AGGGTTGGGGAGA-AGAGAGTGAGGTGAATCAGACAGGTTCCAAGTGATGAGACGAACTAACAATGAGCCAGGATGCCAGGGTCAGGGGTGTCAACATGGGGTTCTAAGGAGGCTGCAGGAAACAAGGTTAGGGTTCTCCAGAGGTCTGCAAATCTCAGTGCAGGGAAGATGAGTGTTAAAGAGGAAAGGCCTGACC-------TTCATTTTAATTATAAAGTCATTAATGCACATGTGAATTTCCATTTTCCTGAAAGCTTTCTGTTCCCTAGAGAACCTGTATGTCCCATGCTATACACACAGGCAGGAAGAGCTTAAACTGGTCACATAACAGAGATGGAGGA-----GGAGGGTGCTGCTAGGAAGCATGCCAAAGTCTGTGGAGCACTC-ACTGGGACTAGGGTTCTAACCCCAGGTCTATCTCTAGCCATATGTAACTGTACAGCTTCTAGTGCTGCTagaaagcatgccgaagtctgtggagcactcaagagaccagggttctaaccccaagtgtgtctctagccatatgtaactgtg-cagtttcagcatttagggtcttggcctcagtttccttctctgtcagatgaggcagttggtctctatgagctcaaaa-tttccaggtttgaaattctatggtttctatCTAAGGATA--CATAGGAATAGATTTATAAGAAAATGCTAGATGAAAACTCTAGGTTTTTCTTAAGGTAAGGAGGACAATATTTTGCTCCTGAGGTATATCAAGAATGAGAAAAACAATTGTGTGTGTGTGTGTGTgagagagagagagagagagagacagagacagagagagagagacagggagagGGTATATCAAGAATGAGAAGGAACAATGTGTGTATGTGTGTGTGAGAGAGAGAGAGCGGGGAGGGGGGAGATCAAAGCAGATGTATGAGG-ATATGAACAGTACAT-GGCGTATAATGAAAGAGTTTCAGGAGAAACCTGTCTGGTTCTGTTGGAAAAACTCCGTCTCCTGGCGCAGGACAGCCCCAAACACCTCTCCCTGCAAGTGGCTGTGCACGTGGCCCATGGTGTTGTTATAGATCCCGTCACCCACGAACTCCAGCACTGCACTATAAAGAACCCGGAAAAAAAGGGGATCAGGGTGTGTTCAGGGAACAGACTGAAGGTCCCAGGTATCCCCATATAAGTGCATTTCGGACAGCAGCCCCAACTTCCAACTCCCTCATTTGCAGGGTGCCCCATTTT-------------CAGCCCCCAGACCTGGCTATGGTGAGAATGGACATGAGAGTTAAGTTTCGAGTGAAGGTATCGGCTGAGCCATCTTGTAGAATCCAGTCAGTGAGGCGGCCCGTAAAGAATGGAATGGCCATCTCCCCTGGAG----AAAGAGAAGAGAGGTCACGCACAAATATTAAGTCTAAGTAGGTCAGTTCCAGTCAGACTGGCCCCACC-----ACGCCTCCTCCCCC--TCACCATTATCCTGGAGGGCATCAGCAGAAAGGAAACACTGACGTCTCAATCCCGAACCTAAATAGGCTGCCCTGGAACTCACTACCCTGTGGTT--GCTCTACCAGAACTTTCAGGATTTTATTAGGAAGGCTGGAGATCATGAAGTAGAAAAGCCTCCTGTTAGAGATGAGGATGCCCCGCCCTTCGGCCCCAGAGCAAAGGATTTCCCCGCTTCCGGCGTGGCCCAAAGAATCAAGACCCGGTCAGCAATGGAGCCCAGAACCTCTGGCCCCCGCCAGTCCAGTGCCGTTTCTTCTACACCGAAGTGGTGTTC-CAAGACCCACGCTAGGAGTCCTTCTCCTGCTCCACATTTCCCAGAACCCACGCTACTCTACCTTACTGACAATTACCTTTGATTCCTGTCCCAGTCCCCTTGTGTCCTCCCCTCTTGCCCTGCGTTCCCCTTACCAAGAGAGGAGAGGACCACCAGGACCAGGAACAGCGAGAGGCGGCGCGTCTCCGAGCCCAGGCAGCCTAGAAGCCGACGCACAGGGTTTCCAGAGCCGCCCTGACCGCCGGGCACCCAGAGGCTCCCGAGTTTGTGCCACAGGGCTGCTGCGGGCAGTGCCGCTGCATAACTGACAACGAAGGCGGTAGGGTGACTTCCCCAGTGCAGTAGCCTGGTGCTATCCGCGGACCCGGGGGCTCCCCATGAGATCAGCTCTCGGAACAAGGCAAGTCCCGGCAGGGCCAAGCCCAGTGCCGCAGCTAATGGCTTCAAAGCAGCCAGCCAGCCCTGGGCACCTGCGTTTTCGCTCTTGGAGCCACCCGTTGCCCTGAGGACCCCGCAGGCCCCCAGCCAGAGCACGGCCCAGCGGCTCAGGCCCACCGCCCAGACCCGGAGCAGTGGCAGCGCGGTGGGCACCAGCAGGGAGAATAT-GCGGGGCAGCGCGGTCC-GGAGCAGCACCCAGTCGGCGAGAAGTAGCAGTACTGTCCCCAGCCATGCGAGAGAAGCTCCGGGGAGGCAGCGGCACCCGCGGGGAGCGGGACACCTAGAGCTAGCCATTGGCACTCGGACGCCGTCCCGGTCCCGGCCGGGCCTGGGACTCTCCG-CGCCCCGGTGGGGCCTGAAGCTCCGGGTACCGCC----------------GAGTCCTCCCCTACTGGCGGCTGGGGGAGGGAACGAGGGCG---------GGGCTCTCGGAAAGTCCCAGGA---ACAGGCTGATCCTGCGCTGGCGAGAAGCTCAGCCATTTAGGGGAAAGCGAAATCGAAAGCGGCCGCCTGCTCACTAGATAACGCCTACTTCCAAAAGTGGCCTGCCCAGACTATTTTGG--TAGCAAGCGTGGAAATCAGATCTGAGAATCTCGGGAGCAGCCCTGGTGCCCAATTTTCTCCATCACGCACACCCTTCTCGCCTCTCCCTGCCTCCTGCCT------TTCCACTTGCACCAGTTTTCCCACC----CCAGCCTCAGGGCGGGGCTGCC----------TCGTCACTTGTCTCGGGGCAGATCTGCCCTACACAAGTTAGCGCCGCGCGCAAAGCAGCCCCGCAGCACCCAGGCGCCTCCTGGCGGCGCCGCGAAGGGGCGGGGCTGTCGGCTGCGCGTTGTGCGCTGTCCCAGGTTGGAAACCAGTGCCCCAGGCGGCGAGGAGAGCGGTGCCTTGCAGGGATGCTGCGGGCGGGAGCACCAACCGGGGACTTACCCCGGGCGGGAGAAGTCCACACCGGGGTAATGGGTCTGGGCTTGAGGGTTGGCAGAGGGGTGGAGGAGATGCAGCGGCCAGGGGACCCTGGAAGCGCGCGCGGAGAAGTGAATGCAGAGACCAACGGGAGCGCAGGGAGGTCGCCTGTAGCAGCCAGCGCTTGCAA------CCCGCAATGAGCATAGAGTATTTCTTTTCTGAGGGGGGT-CGTCTAGAGTGTCCGTGAAGGGACCAGGCACGCGAGGCTGGTGGAAAAAGGG--GGTGCTTTGACTCTTAGCTGGAAGCGTCAACGGGAAGCTACTCTAAAGCGCTTTCGCTTTCACTCTGGTCCCGGACAGT----GGGGGCTGGTTAAATCAAGAAAGGGGGTTGGGGATGGTGCAAAGAGATGAGGAAATGGTGCCCTGGGTGAAGTAGAACAGCACTTGGGAGAAGGAAATATAGGCACTTATTGAGAAGGACCAACTCATCACACAGACTTTTGATAAACTTGCCACTGGGCAACTCTTAGCCCAAGCACTGATAATGGGCGTTCTGTGTTAACTAGTGATGCCCTTCCCTAGCTTGACCCAGGAAGGCCTCTCCTTG---GCCCAGATGCTGCCTTACTCCCTTCCCTGTGTCTTCCCTGCCCACTCCCATGTGCCCACTGGGGGGACTTTGCTTAGGATGGGCGCCTGGGGCAGATGGCAGCCCCAAGACTGGCTGGCTGGCTTCTGCT-CTGGACTACTGCCACCACTCGTGGCTTGGGGGCGGCTTTGTTAGAGAGGAATAGCCTCTAACTTGAAGTTAACCCTGTTCTTTGACCCTCTATTCATGATAAGTCTGTCCGTCGGAAAGCATACTCAGAGGAGCGTCCTTTGGGGCCAGAGTAATTTACGGCCTGGTAAGAAAGACACAGTGAAACCACTTATAATTTGGGAAATCTCCCCTCACTGCCAAAAGAGCAGtggcaagtaggaagtagaagtggaaacaagggataagagttagacctgaattttagtcccaggtctactattaactctgtgtgactttgcataagtcgtttgcattttctgtgacttggtttcctcatttgaaccgaggatctttaaggctccttccaactcAA----TAGTAGAATAAATGTAGCTTTAT---------CTTCCCTCA--CTTCTTCTTGA-TTCTTTTCTTGACCTGGAAAAGTCAGCTTAAACTTCTCAGTCAAATTATCTCTTGGTACAAATTTACCCCCCTGGCTGCTGAGATATGTATTTACCTCTTGATCGGA s canFam2.chr12 5431856 5279 + 75515492 aggaaacaatctcaagagaaaataagttactagcccatggtcacagagctagtaagtggcagcattgagccaggattcctgaat-gctgctctcagactctttcAATGATGTAACAGATGTCCCTCACCCTTGGCTTCTGCTATTCCCATGGCTCTCACTAGCACATCCACATAGTCCCAGCATGATGCTGGCACAGGTACAGGAATTTATGATTCCCCGAGTTCTGCCTGAGAGGCAAAGGGAAGCCCTGTGACTGGAAGATAGGGCATCTCCCCAAAAGATGGCGCGGGGTGGATTCAGTGTACCATGGTGACATGAAGCCATCCAGCGGGTCTAAAAAAGAGGGAGGCAGTTAAGAACACTAGGTAGGGTAATTGAGCTCCAGCCTGCTAGGATGAGAACAC----CAAACCACTGCC--------GGGGTGTGTGGAGCAGGATTAATGGAAAAGGGAATGGAGTCGAGGCATCTCAGGGACAAGGGAACAGGCATTCTTCTCCAGGTGCTCACACTGGTGATCCAGAGGTTGACTGCATAGGCCAGAGCCTCCTTCTGATGGAGGGTATTCATTTTCTGCAGCTTTTGGCTAAACTTCTGGGCCTCACACTCCTCATTGGCAAAGCTCCGGACTGTGGGCATTGCTGACAGCACCTCAATGGCCACCTGGCTAGACTCTGCCAGAGATGTCTGCACCTGTGTGGCCAACACCTGCGGAGACATGGACAAGAACTGTCACCCAGGGTTGGCAAGCCATCAGGGACACTACTAGCACCTGAGTTGCTTAGTCGGAGATTAAAGGTGAGAAGAGGCAG-GTAGATGAAGGAACGAGAAAGGGGCACAGTTATACCTCCTGGATACTGAAGAGTTACAGTGGAGAGGAAATTTTTACTGAGAA-GGGTCACAGGGAATCATAATCTTGAGAGTGGTGATCATGTTCATAAAGATGGATTGTGGGCAGAAGTT-----AGAAGACACAGAGAGTATGGAGCCCAACACTGAGCAATCTGGGGACATGGACTACGGGGAAAGGGAGTCCCATGGAGATGGGGAATCACTTGAGGGTGCCAG------------GAAAGAAACCTCAGAGGAGTTAAATCCACCCAATCTGGGAAATGAAGGACTG------------CAACTCCCTCGACATACCTGGTGCCATCTTCCTAGCTTCTCAGGCAGAAGGAAAAGCAGAGGCAGGGTGACCACGGTGACCATGGTGAGGGACAGTGACTCCCAGAGCATGAGCCCCAAGAGACACAGCCCCCGTACCAGGTACCACAGCAATAGGCTCAGCTTCTCACTCAGAGACTCACTCAGGGTGGATGTGTCCTCTGTCACCCGAGAAGTGATGGCTCTTACCAGGGGTCGGGGAGATGGAGGAGGAGGAG----AGAGGGGGTAGAGGGGGTGGGAGG--------------------------------------AACATGGTGTTCTGAGGAGGCTGAGGAGGACAAGGTAAGGGGAATAGGGGAGTTTAGGGATCTCCATGCAGGGAGAATGAGTATTGGAGAGGAAAAACCTGGCCAAAGACTTTCGTTTTAACTATAAAGAAATTGATTCCTATGTGAATTTCCATTTCTCTGACACATCTCTGTTCCTTAAAGA---TGTATACCCCATGCCGCACACGAGGGCGAG-----------CTGGTCACATAACAAAGCTGGACAAAAAACAGAGAGTGCTGCTAGAAAGCAGTCCA---------GAAAACTCTACTgag-------------------------ctctgg-----------------------------gctgggaa-----------------------tcaaaagat--gggttctg---tcaagctcatctctatccatatgtgaccataccaatttcagcatttagggtctgggcctcaggttccttctctgcaaaat-aggcaattggactctgtgatctcaaaattttccaggtcttaaattctatagtttctatCTAAATATACGCACAGGGATATATTTATGGAAAAATCTTAGATGGAAAAATTAGGTTTTTCTGAAGGTAAAGAACATAATA-----CTCTTGAGGTATACCAAGAATAAGAAATGACAATGTG--------------------------------------------------------------------------------------GCAATGTGTGTGTGTGTGTGAGAGAGAGAAAGATCAT---GGTTATAAGTAAAAGATGGTATATGGGGAATATAAAGAGTGTACAGATGTGTAAT----GAGTTTCATGAAACACCTGTTTGGTTCTGTTGGAAAAACTCTGTTTCCTGGCGCAGGACAGCCTGAAATACCTCTCCCTGCACCTGGCTGTGCACACGACCCATGATGCTGTTATAGACTCCATCACCCAAGAACTCCAGCACTGCACTAGAGAGAGATGGGGAGAAGA-AGGATCAGGGTGTATTCAGGGGACAGAGAGAAGGTCCCAG----------AGAAGTGCACTCTGGGCAGCATCACCAACTTCCAGCTCCCTCTTTTTCAGGGTCCCCCATCCTCAGCTTCCAGCTGCAGCCCCCAGACCTGGTGGTGGTGAGAATGGACATGAGCGTTATGTTTCGTGTGAAAGCAGAGGCCGTCTCATCTTGTAAAATCCAGTCAGTGAGGTGGCCAGTGAAGAATGGAATGGCCATTTCCCCTGGAGGGGAAGAGGAGGGAGGGGTCAGTCACAAATATCAGGTCTAAGCAGATCAGTTCCAACCAGACTGTCTCCTCCCCCATCCGACTCTTTCACCTGTCACCAGTATCCTGGAG----CCGGCAGAAAGAGCACACTGAGGACCCAGCCCTGCA-------------CCCTGGAACCCACAACCCTGAACCCCAGCCCCACCAGACCTTCAGGGGGTTATTTAGGAAGACCAGCGGTCAT--------AGGGCATGCTG-----------------------------CCCAGAAAAAAGGACTTGC------CCAGGGTGGCT---------------------------AGTCCTAGAA----------------------------------GACACTGGAGTGGTCTTCTCACGACCAGAGCCCGGCCGCCTTCCCCTGATCCACATTTCCCAGAACCCACACCAACCGATCTCACTGCCCCTTA-GTAGGATTCCTGCCCAGG--CTCCTGTGGCCGCCCCTCTGCCCCTGCA-CCCTCTTACCAAGACTGGAGAGAACCAACAGGGCCAGCAGGAGCGGGAGGCGGCGCATCTCTGAGCCCAGGCAGCCTAGAAGCCGGCGGACCGCGTCCCCTGAACCCCCCCGCCTTCCCGGCGCCCAGAGTCCGCTGAGCTTATGCCACAGGGCGGCTGCGGACAACGCTGCCAAGTAACTGAGGGCGAACACATCCAGGCGACTCCCCCAGTGCAGGAGCCTGGGGCTGTCGGAATCCCGGGGGGCTCTCCACGAGCGCAGCTCTCGGAACAAGGCAAGGCCGGGCAGGGCCAAGCCCAGCGCCGCCGCCGCGGGCTGCAGAGCCGCCAGCCATCCCCCGAGTCCCGCGCTTTCGCTTCCGGAGCCCACCGCCGCCTCGAGCACGCCGCGGGCGCCCAGCCACAGCACAGCCGCGCGGCTCAGGCCCACCACCCAGGCCGGGAGCAGGGGCGGCGCCGTGGGGACCAGCACGGAGCAGACGGCGGGGGAGCACCTCCCGGGAGCAGCGCCCAGTCGGCGAGAAGCAGCAGCGCCACCCCCAGCCACGCCAGGCGAGCTCGGGGCGCGCAGGGGCGCCCGCCGGGACTGGGGGGCCCTGAGCCGGCCATGG------------------GGTCGCGCCACGGCCTGGGAGTCTCCGTCGTCCCCGCCGGGCCGGAGGCTCGCGGTGCTGCCCGAGGCTGTGCGGGGAGAGGGCGCTGAGGCCCAcggccgggagcggggggcagggcgggcggcggcggggTCTCGGAAAGTCCCGGCACCCGCGGGCTCTGGCCGCGCCGCCTGAAGCCTGAG--GTTTCGCGGAAAGGGAAACCGAAAGCGGCCGCCGGCTCGGGAGGTCCGCCGGGCTGCAGGGGGAGGCCCGCCCAGACTATTTTGGGAGAGAAGGCGTGGAAAATAGATCTGAGGTTCTGGGGAGCAGCCTTGCGGCCCCACCTTCTCCATCATGCACACCCGTCCTTCCTTTCTTTGCTTCCT--CTGGCGAATTCCACTTGTCGGGCTTCTCCCCCCCCCGCCAGCCTCCGGACCGTGTTACCCCAGCCCCTTCCGTCACCCGTCTCCGGGCAGATCTGCCCCGGGCAGGTTAGCGCCGGGCGCGAAGCC-TCACGCAGGACCCAGGCGCCCCTAGCGGGCGGGGCGAAGGCGCGGGGCTGGAGCGGGCGCGCTGCCCGCGGTCCCGGG-AGAAGAGCAGCGCCGCAGGCGGCAGGCAGCGCGGCGCC-----GGGATGCTG------------------------------CGGGCGGGAGAAGTCCACACTGGGGTGAGGAGTCT-GGCTGGGGGGTCAGCGGAGAGGTGGAGGAAGGGGAGAGACGGGGGGGCCCCAGAGGC-CCCGCGG---GGTGAACGCGGGGACCAACA-----GTGAGGAGGGAGTTTGCACCAGCCAGTGCTGGCAGAGGTGCCCCGCGTCGAACCCAG-GCGTCTCTGTTCTGGAGGGGCTCCGGC--GGGAGTCCGCGGAGGCGCTGCGCGCGCGACGCTGGGGGCGGGGGTGCAGGCGCTTTGGCTCTTAGC-GCAAGCAGCGA-GGGAAGCTGCTCTAAAGCGCTTTCGCTTTCAC-----CTCCGGACTATAGAGAGGGGCTGAATAAATCAAGGGAGGGGGGTGGAGAAGGTGCAAACTGATGCAGAAATGGTTCCCTGGGTGAAGTAGGGCAGCACTCGGGCGAGGGCAATGTGGGCGCTGATTGGGAGGGGACAGCTCATCACACACACCTTTGATACACTGGCCGCTGGGTTACCCAGAGCCACAGCCCAGATAGCGGGGGTTCCTTGTGAGCCGGTGGTGCCCTTGCCCATCCTCGCCCAAGAAGGCTCCCGCTTGGCTGCCCAGGGGCTGCCATGCTCTCTTCCCTGTGTCCTGCCGGCC----------TGCCCAA-----------------------------------------------------GGCTGCCTGGCTTCTGCTCCCAAACTCCTGCCACAACTGTCCGCTTGGGGGTGGCTTTACTTTAGA-GAATGACCTCTGGAGTGGGGCTGCCCTTTTTCAATGGCCCTCAATTCATGGTGAATCAGTCTGTGGGAAAGCACTGGCAGGGCAATGGCCCTGGAGCCTGG----ACCCACAGAGTGATGAG---GATTCACTGAAACCATT-------------------------TGTCAGGTGAGCAGTGGGAAATAGGAagcagaagtcaaaacaagagatgggagttagacctgggcgttagtccca-atctgctattaattctaggtgaccttgactagtcagtcaccctcctccatgattcagtttcttcatttgaaccaaggatctttaaggctctttgcaactcAAAGAGGAGTAGA--AAACGTAGCCTTATGCCTTTCACCTTCCTTAATTCTTTTCCTTAATTTCTTTTCTTGGCCT-GAAAAGTCAACTCAAACTCCCCAGGCAAATCCTCTCTC-GTACAGAGCTCTTCCCCTGGCTACTGAGATGCACATTGACCTCTTGATCAGA a score=55281 s hg19.chr6_ssto_hap7 4254068 1336 + 4928567 AATTCCATAACTGAAAC---------TTTTATTTTCAACCATCTGTATGTGTTCCT-TGCTGCTTCTCTCCTGCCTTGCC-CCTGGCCATGCTAACCACTGCCCTCCTCGATTTTTTCCAATGTTCAGTAAATTGGAAGAGCTCACTTCTGATGAAATGGGGGGTGAGAGTGGAGGATTGTGGACCAAAAAAAAAAAAATAGACTGACCTTGTTTCCCAAGATCATAGTCAATTACTCTGTGTTGGGTCTACACCACATCTGCACATACTATGAGCCCTTCCGTTGGAGATAATTTTCACTTGCGGAGCTGCTTCACT----------------------------------------------------TCTACCTGTAGGAGCCTCATCTCCACCTCTCT----ACAGTGGAGAGGATTCCACT-AGGCAAGTTGGAACTTAGGGACACAGTTCTTTCTGTGTTGT-ATCACAGCTGGGCTGTGGCATTCCCCTGCAGCCGGATGAAGCAATAGAGAAagtggaaagatgaagggaaaaaaagcctgtactgacagtcagctctggcctg--ttactgtgtaatctttgagccagtcacttcgcctctctgggaatgtttcttcttctctaacatgagggcatcaaggctgttcttgccctgacattccatattctgtgTCTCTGCAGACCACCATCATGGCAGTGGAGTTTGACGGGGGCGTTGTGATGGGTTCTGATTCCCGAGTGTCTGCAGGGTGAGTAAAAGTGAAGATGTATGCATTTGGAAAGAAGCTAATGGCCTCAAATACACACTTTC-CTTACCCATTCATGAAAAGACTGGCAAACTGGAGCCTTGGAGGAATGGAGTTGACCTTCCCCAAAAGCCACTATGATAAGCTATTTGGTGGGTGCTTGGGTCTCTGAATTTGTGGAGGAGGATCTGGGGTCTGAATGTGTATGTGACCTGTCCCAGTAGTGTACAGGGATGAGTAAAGGA--ATAGGGTCTGAGAGGGGGACAGGAGATAGAT-TTTTGAGGGTCTTCTTTCCATCTGTGCTTAGGGATCAAAAAGATGATTCTGTCAAGCAGATAT-CTGGTTTCTCATTTACCATATATTGAACTA-TTTTGTCTCTTCTCCCACTCCTAACCAATTTCCTCACATGCAAAATGAGTATATGGGGTTAGGTCAATATTACTGACATTATGTTCCATAGAACATAA--CTCTCTCAAGATTGTTAATAGCAAAGAAAATTGATGAGGCATATTTTTCTTACCTTAGCatttttt-gctttgttataaaatctaagcctgaaaaataagcctaattttgattaacatctgcagtgattaataatatctgagatgattatttgcctcctgctttaatccaagcattaaacttcatg s canFam2.chr12 5437639 1360 + 75515492 aaaTCCTTAAATGAAACCATTTTTTATTTTATTTTAAACCAACT-CATGTGTTCCTAGGCTGCCTCCTTCCTTCCTTAATGCCTGACCCTGCTAACCACCATACCACTTG-TTGATTCTGTTACTTAATAAACTGGTTAAG------------------GAGTATGGGGGTGGAGAATTA-GGGCCAAAAAAAAAAAAAGACA-TGAGCTTGTTTCCCAAGGTCAGAGTAACCTTCCCTGTGTTGGGGCTG-ACCACATCTGCA---GCAACAAGCACATGTGGTGGTCAT-----TCACTTGTGGGGCTGCCTCACCCACCAGTGATTGGAAGCACCCCATCCCTCCTCCCCACGCCCCGAGCCAAATGTCTACCTCTGCAAACCTCATCCTCACCTCTCTCCTTATGGTGGGAAGGATTCTACTTAGGAAGGTTGGGGCCTAGAGATAGGATTCTTTCTATGTTGTTGCCACCACCAGGCTCTGACATTCCCCTGCAGTTGGGAGAGGAGATGGAGATAGTGGAGAGATAGAGGGGATA---TCCTATACTGGGAGTcggctctggcctaaattgctaaatgatctt-gaatcggtgacctcctttctctaggaatgtttcctcatctgtaacatgagggaatCAAAGCTCATCCTGCTATGACATTCCATCCTCTGTGTCTCCACAGACAACCATCATGGCGGTAGAGTTTGATGGAGGTGTTGTGGTGGGTTCTGATTCCCGGGTGTCTGCAGGGTAAGTACCAGTCAAGGTGAATGCTTCTGGAAGGAAGCCAATGGCCCCAAGTACAGATTTTTTCTTACCCATTCATGAAGTTATTAGTAAAGCGGAGCTTCGCAGAAACTGAGTTAACCTTTTAGAAAGGCCCCTATAATGAGATACTGGGCAAGTGCTTGGGTCCCTAAATTCATGGAGAA---TCTGGGGCCTAAAAGCTTATGTGGCCTGTCCC-------TGCAGGGATGGGTATAAAACGATAGGGTATGAGAAGAAGGTAGGATGCAAAGATTTCAGGGGCCTGCCTTCCTTTTATGTTTAGAGATAGAGAAGACGGCTCTGCCAGGAAGATATTCTGGTTTTTCATCCAGCACATGTTGATCTGGTTCTGTCTCCTCCA----TTCTGGCCAGTTTCCCCCTATGCAAAATGAGTATATGGGATTAGGTCAATATCACTTACTTTACATCCCATAGAACACAAAACTTTCTCAAGATGGATAG-AGCAAAGAA--TTTCTTAAGaatattattcttaatttactatttttttgttttattattaaatCTAAGCCTGAAAA-TAAGTCTAACTTTGATCATTACTTTCTGT--TTCATT-TATTTGAGATTATTTTTTTCTTCCTGTTTTAATCCAAGTATTAAATATCATG a score=3044 s hg19.chr6_ssto_hap7 4255404 62 + 4928567 CTATTCTCTTGTCAAAGAAATTTGAGAGACATTGAATGATCACCCTCAAAAATTCCTGAGTT s canFam2.chr12 5439212 58 + 75515492 CTCTTCTCTTGTCAAATAAATTTGGGAAACACTGA----TTAACCTAAAAAATTCTGGCGTT a score=74896 s hg19.chr6_ssto_hap7 4255766 1532 + 4928567 GCAAACCTGAGTTTTAACTTGGTGACTGTTGACTCCCTCCTGACAGCGAGGCGGTGGTGAACCGAGTGTTTGACAAGCTGTCCCCGCTGCACGAGCACATCTACTGTGCACTCTCTGGTTCAGCTGCTGATGCCCAAGCCGTGGCCGACATGGCCGCCTACCAGCTGGAGCTCCATGGGTATGAAGCTCTGGAGTTCT--GACTCCCCACCCACTAGAGCTCCCCCAACCTGCATGAATCCCTGTACAGTGTG----CTGTTCCAGGAGCTGGACACTGGGAAATGGAAAAGTCTTGTTTCGGCTCTTG-----------------CTGGCACTTGAATCTGtcagtttctgcatctgtaaagtggagataat--atagcacct---------catgagacggttattttgagaaccacgttctatatgtgaacacagtttaaaagctgtaaatcactatcctgatataaATAATCAGGAAGAAGGTGATATTGTGACCCACCATAATATCAGGCAGTTACCATACGAGAAATCAAGGTCGTTGGGATGGAAGTAAC-CTTATCTGCTTTTCCCCATAAGAGCAGGGTCCTTGCAGCCAAAAGAAAGTTAT--------------GTGGGTGGGGCTGAGCAAAAGAGTGAGCAATTGAAAGCTTCTTACCAGTTGGTG---GTGTGGGACTCTGGTTCCCCTGTACATGTGGGAGGGAGGCTGCAGTTTGAGCTATTGCAGTTACAGTTTTCAGGG-------GTCGTTTAGCAGGGATGATGGTAACAG-TATAGGAGAATGAGACTT---AAAATTCTATCAACCTTTATTCCTAATATTTCCCTCAGGATAGAACTGGAGGAACCTCCACTTGTTTTGGCTGCTGCAAATGTGGTGAGAAATATCAGCTATAAATATCGAGAGGACTTGTCTGCACATCTCATGGTAGCTGGCTGGGACCAACGTGAAGGAGGTCAGGTGAGTTTCTCCCAAAGCACTCTCTCCTCTGGGCTTCCCCACTCTCCTGCAGAGGAAGATGGAAGTCCTATGTCATTCTAGCAATGAGTTCCAAGGACACTACCTCTGAAAGCATAGTA----------CTTTGGGGATATGAGATACCAGGGCTTCATTGCAGGGTGCAGAGAC-CACTTAATGTCTCAGTGGGAAGGAAGGGCTTGATGATTC-----TTTAACCTGAGGATCCCTTTCCCAGGTATATGGAACCCTGGGAGGAATGCTGACTCGACAGCCTTTTGCCATTGGTGGCTCCGGCAGCACCTTTATCTATGGTTATGTGGATGCAGCATATAAGCCAGGCATGTCTCCCGAGGAGTGCAGGCGCTTCACCACAGACGGTAACCAGCCAAGTGGAAGGGTACCTGGGGAGGGCTTTGAAACATGGGAAGGAAGTAGATTATGAGGAACAGGAAGAGAAATACAGgggtggccatttaagttaatgccgggcctggtacacttttaagagtg-aaaaggggcaggacaaatgcaaagctcaatggggctcttgggcaatacggataaaccagggctgttctgagt------------------------------------aaatcaaatgaggatacacagtcacTGTGAGAACCAGT s canFam2.chr12 5439270 1607 + 75515492 GCTAATGT-----------TGCTGCCTGCTGACTCCTTCCCTGCAGAGAAGCAGTGGTAAACCGAGCATTTAACAAGCTGTCCCCACTACACCAACACATCTACTGTGCTCTCTCTGGCTCCGCTGCTGATGCCCAGGCCATGGCTGACATGGCTGCCTACCAACTGGAGCTCCATGGGTATGAAGCTTTGGGGATCTTCAAGTCCACACTCACTACAGTTCTCCCAACCAGCA--AACCCTGAGACAGTGTCATTCCTGTTCCAGGAACACTGCTATGAAAAATGAAAATTTCTCATTTGGGCTCCTGTTTTTATTAGCTTTGAACTGGCACTtgaaacc--tggtttccacatctgtaaagtggagataattaatagtacctaccttacctcaccggacagttttgttgagaatcaaatgatctatatgaaaatggcttgaaaATTGTCAATCACTATCCTACTAGAAATAGCGAGAAAGAAAATGATGGTGTG-CCCACCATA-TGCCAGGCAGTTACTGTGTGAGAGACCAAGGTCATTAGTGCAGAAGTAAAGCTTATTTGGTTTTACTCACACGGGCAAGGCCCTTGCAGCTCAGAG----TTATATAACTGGGAGAGGGTGGGTGGGGC--AGTAAAGGAGGAGAACGTTGAAATCTCCTTACCGGTCAGGACGAGTGCGAGACTCGG--CCTCCTGTGCATGTGGGAGAGGAGCTGGAGTTTGAACTATTGCAGCTCTAGGTTTCAGGTTTCACATGTCACCTGGCAGGGACAATGGTAATGGGCACAGGAGGGGGGAACTTCAGGAAACTCTATTGACCCCTATTACTAATATTTCTTTTAGGTTGGAACTGGAAGAACCTCCCCTTGTTCTGGCTGCGGCCAACGTGGTGAGGAACATCAGTTATAAGTACCGGGAGGACCTGTCTGCACATCTCATGATAGCTGGCTGGGACCGACGAGACGGGGGCCAGGTGAGGGTCTTCCCACGTACACCCTCCCTTGGTGTTCCTCAGTACCCTACAGAGGGCGATCGAGGTTATATGTCATTCCAGCAATGGGCTCCAAAGACCCCGCCTCTAAAAGTGTAGTATAATCGCAACCCATGGGGGTAGGAGACCGTGGGGCTTCATTGCAGAACACGGAGACACGCTGACTGTCTCAGTGGCAAGGAGAGGATTGACGCTTCCATGGTCTAACCTGAGGATGCCTTCCCCAGGTGTATGGAACCATGGGAGGAATGCTGACTCGACAACCCTTCGCCATTGGTGGCTCTGGCAGTACCTATATCTACGGTTATGTGGATGCAGCCTATAAACCAGGCATGTCCCCTGAGGAGTGCAGGAGCTTCACCACAAATGGTAACTCACCAAGGGGAAGGGTACCTGGGGGGGATTTTTAAACATGAGAAGGAAGAAGAGTATGAGG------------AATATATgggtgaccattcaatttaatgtccaaactggaacacttt---gagtgtgaaaggagcaggac-aatgctaaactaattgggacttcagaaccaaaggcatcaaccaggactgtcctgagtatattcagaaatatatatggttacTATAAGAATTCAAATTCAAATTCAAATATACGGTTACTATAAGAATcagt a score=31746 s hg19.chr6_ssto_hap7 4257639 578 + 4928567 ggtgtgctgaggctggcttgggaccactcatgagagcggactgttaaatagtcaaggatttgtgaactgc----ttagctatttgtaacttgcaattcatcatagcgggagcatttacaccatggacatcagcagatgccacatatggaagcctttttgtaa------------aaaaactgatttaccagcacaccactAAATATGCCTTCCTGGAAGATGAGTTTTGAGG--TGAAAGTGGTAGTAGGCATATGGATGGAGGGGGAGTAAAAAGATTTTTGAAGCTAAGCCATCCTCTCTCTCCCTCTCTCCAACTTGAAACCCTCTGCAGCTATTGCTCTGGCCATGAGCCGGGATGGCTCAAGCGGGGGTGTCATCTACCTGGTCACTATTACAGCTGCCGGTGTGGACCATCGAGTCATCTTGGGCAATGAACTGCCAAAATTCTATGATGAGTGAACCTTCCCCAGACTTCTCTTTCTTATTTTGTAATAAACTCTCTAGGGCCAAAACCTGGTATGGTCATTGGGAAATGAGTGCTCAGGGAGATGGAGCTTAGGGGAGGTGGGTGCTTC--CCTCCTAGATGTCAGCATA s canFam2.chr12 5440877 581 + 75515492 ggtgtgctggagctgacttgggccagctcatgagagccaattgttaaatatccaatggttcctgagctgctcatttagctgtttataacttgaaatcaatcacggtaggag--ttttGAGTTTGGATACCAGGAGATGTAACACATAAAGGGTTTTGTGTTGTTGTTGTTTTTTTTAAGTTGATTTACTAGCACATTACTTGATGTGTGTTCCAAAGAGATGGGTTTTGAGGTCTGAGAGTGGTAGTAAGCATATGAGCGGGAGAGGAATGTAAAGATTTCTGAAGTTAAGTTATTTTCTCTCCCCCTCTCTAC--CCTGAAACCCTCTACAGCTATCGCTCTGGCCATGAACCGGGATGGCTCCAGTGGGGGTGTCATCCACCTGGTCACTATTACAGCTGCTGGTGTGGACTATCAAGTAATCTTGGGTAACGAACTGCCAAAATTCTATGATGAGTGAATCGTCC-------TCCCTTCATTATTTTGTAATAAACTCTTTCAGACCAGAACCTGGTATGGTCAATGGAAAATGGGTGCTCAGGGGGATGAAGTTT-----AGGTGGGGGCTTCTTCCTCCCAGATGTTAG-ATA a score=7173 s hg19.chr6_ssto_hap7 4258506 156 + 4928567 TCCTTTCATAATGCATTCATTCATATTAAAGGGCAATACATGAAAAATGCTTAAATATTTTGGGGCACTTGTGAATTTCAAAGAATAATGACAATAACCAAAAGAAGCTACATT---TGTGGCATTGGCTAAATGTTTTATAAATTTTATCTCTTAAAA s canFam2.chr12 5441458 148 + 75515492 TCCTTTCACAATGCCTTCATTCACATTAGAGATCAATACAAGATAAATGCTTAAA-ACTTAGGG--ATTTGTACATTTCAAAGGATGATAACAATAGCCAAA-------ACACTGACTAAGGCATTAGCTTAATG-CTTATAAGCTTTATCTCTTAGAA a score=21147 s hg19.chr6_ssto_hap7 4258983 598 + 4928567 acaaacaaacaaaaaCACCcaaccctatataggtagtattattacttctat---aggacacatagaggtttggaaagattaaatcacttgaccaaggtcacaaaataagttctgaggctgggatctgggattcag----------------------TCTTATTATATGCCCTTCCTCTACCACTCCCTAAAACTTCTCATTCCCTCAATCCCCATATATCAT-------CTTAAAATCTGCAATAAATAGCCCCATACATTCGTTGGCACTTAGGAAACTGTTACCAGATGGCTGAGTAACTGTATTAAAACAAATTTAATTCTG--CTTCTATCTTTGCCTTGCACTTCCTGAGTGACAGGA-----------------GTGAACTCTCATAtccttttctgtcaaaagatggtgctgaatgatttctaaggtagtttacagttccaacattcaatgCCATTTTGCTAACAAGTGGGCAGTCAACAGGCATATTCAACAGAAATACTAGTA-----------------------------------GGATCTCAGGCTAAACATACGAATTCAAAACT--CTAAAACAATCACATCCCCCT-GGAGTGT------------AAAGAAAAAAATCTAAAATTACAAATGCCTGGAGTTGTTTCTAGCC---------------------------------------ATGATATTTAACTTA-TTTGAGATTTTAAat s canFam2.chr12 5441606 716 + 75515492 ACAAACAAA-----------AGACCTTTATAGCTTATACTACTATATCTATTTACAGACAGATGAAGGCTTAGAAAAAGTAAGTCCCTTGACCAAAGTCAC--AGTGAATTC-AAAGCTGAAAACTGGGATTTAGTTGGGTTTTTTGTTTTTTGTTTTTTTATCATATGCCCTTCCTCTCCCATTACATAAAACTT-TCATTCCCTCAAGCTTCATGTATCATGTCCTCCCTTGAAATCTGCGATAATTAGCCCAGCACAGTAGTTGACACTTAGGAAGTTACGAGCAGATGCCTGAGTAACTGT-TTTAAACAGGCCAAATTCTGGCCCCCAATCTTTACCAGGCACTTCTCAAGTGAGAggacaaattatttcctttctgtgagctctca------tttctgtcaaatgaaggtattgagcaacttctaaggtggcttacagctagaacattcaatgCCATTTTCCTAAAAGGTAAACAGTTAAGAGGTATATTTAACAGCAATCATAGTGAGATCCCCAGGGAGCCTCTGTCTACTTTTCTTTCTGGATCTCAGGCTTAACATATAAATTCAAAAGTACCGCAAACAAACCTATGTCCTTGGGAGCGTGTGTTTGGTTTGGAGGGGGAAAATCGAAAACTGTAGA-GACTTGACTTCTTTCTAGCCAAATAAATTGGTTAGTTCTTTCTAATCaaataaatttaaatgatatttaatttattttGAGGTTTAAAAT a score=18701 s hg19.chr6_ssto_hap7 4259581 463 + 4928567 agcccatttttcccactgatcacaagtaga--aattctgggcagtatacaaaaagcaagtactcaaggactccaaaaagtaaacaaaagcaggtggattgtgaagagggtcaaaactgggagaggggcccctcctggggagtgggttttcaatgttttccccttttttcctcccagctctgccct--gacgtcaggcctcaggtgcagagctgcactgcgtggtagcacaagccctgagttaacaagagaaatacc--ggct--ttctggccagaggaatgaaga--------aaaagggcccctgcaggcaggaatgtgtaggggaatctccaaactgagagtacaggc---ggaaattccctaattctgagtctgaaccctcaggagtaccaggttacccctgagctgcacatgcgtgtgacatgccttaag-ggcacagcaaagactttgagaactgaatgaaga-ttagaTCTTTTAAAA s canFam2.chr12 5442558 467 + 75515492 AGccaatctctcccatggatcacaactagaggaactctggaaagcagacaaaaagcaggcgctgaaggattccagaaagtagacaaaagcaggtggggtataaggagagccaaacttggacaagcaacactgcccaggg-gtggttttccatttttccccctctttcatctcccggctttgccctgagaagtcaggcctcaggtgcaaagctgcggt--------------gccctaacttgccaagagaaacaccaaagttggttctggccagaggaatggaggaagcagacaaaaggggcccaggaggtgggaaagcgtaggaggtttcccaca-tgagggaactgatgaaggggattccttaactctaggttggaactctcacaagtacc-ggtgacccctgagctacacaaacgtgaggcacacccaaaacaccacagcGTGGACTTTGAGAGCTGAACTAAGGTTTAAGCCTTTTAAAA a score=3276 s hg19.chr6_ssto_hap7 4260355 95 + 4928567 TTAGAAGACTTCATTTTTCTGTATTGGCCAAATAACTGTTCTAATGCCCTTCATTCCAATAAAAGGTTTGTAGCAGCTTACAGAG------ATAATTTAAA s canFam2.chr12 5443025 100 + 75515492 TTAGGAATCTATCTTTTTATTTATTGACCAGAGTCTTATCCTTCTGTCCCTTATTCCAA-AGAGTGCTTGTAGCAGCTCCCAGAGACAGGCACAATTTAAA a score=1461 s hg19.chr6_ssto_hap7 4260450 94 + 4928567 ACAATTT-----------------------------------TTAAAAGA---AGAAAACAACACTGGGTCAAAGAGAAAATATGGTTAAGAAAAGTAAGTGAAGCCAAGGAGTGAAACT--AATGGAAACTAA s canFam2.chr12 5443299 130 + 75515492 ataaattaaataaataaataaataaataaataaataaataaataaaAAGAAAGAGAAGAAGAAACTGGG-CAAACTGAAAATAAAGCTAAGAAA---TAATAAAGCCAAGGTGCCAAACTAAAATACAAATTAA a score=2797 s hg19.chr6_ssto_hap7 4260547 88 + 4928567 ACAACGTGAATATCTTAAAAAAAAAAAAagtggtgcgctgtcttatactggctagcaagagcagattgcaaagtattcaggatttttg s canFam2.chr12 5443593 78 + 75515492 ACAAAATAAATATCTTTTTAAAAA------TGGAGTACGG----GAGCTGGCTAACAAGAGCAAATTGTAAAATATTTGGTAATTTTG a score=12464 s hg19.chr6_ssto_hap7 4260635 235 + 4928567 aagacagttgttaactattggtaacttgatattgaccactatggaagtatttatactatagaaatcagcaatgctacaagtcagaa-------gcattgtttttcttcagagagccggtttaacaggacacatatttatcagcCAACTATAAATAGATAA-AAAATAATTGGCTCCGGGCCATAGGATAGTGAAAGCAAAGAAGGAAATAAAATGAGGTACAAGATTCATAAAATTCATTTTT s canFam2.chr12 5443861 243 + 75515492 AAGAGAGTTGTTGACCACAggtaccttcacgttggccttgatggaagtatttattctacagaaaccaggaatattacatgtcagaattgttttgttttttttttccccagaaagccggttTAACAGGACATATATTTATCACCCAGCTACAGCTGAGTAAGAAAACAGTTGGCTCTGAGTTAGAAGGTAGTGAAAGCACAGAGGAAAAGGAAACTAGGTACAAGGTTCAAAAGATTCATTTTa a score=4304 s hg19.chr6_ssto_hap7 4260903 95 + 4928567 ATAGTTCAAGCCACACAGAA----CATTTACTCAAATAGGACATGCATCATTCCATAAAGGTAACGCCAATAAATTCCAGAGTATCGGTATCTTAGAAA s canFam2.chr12 5444534 99 + 75515492 ATTTTTCACATCACACAGCGGATTGatttgctaaaacagaatatgcattatgccataaagaaaactacaatagatttcaaagtaccagtatctttgaaa a score=4118 s hg19.chr6_ssto_hap7 4261316 117 + 4928567 aaagaaaCTATATTCTGCAACCATACTGTAATAAAATTAGAACTTGATAACTAAAA--TATACTTAAAATT--GTAAGTGAACA-AATATATTTATCAGTAACATGGATTTAAAAGGCAGTC s canFam2.chr12 5444633 121 + 75515492 aaaaaagctacattttgtagtcatgttgtaa-aaaattagagttttattttaaaaaacgatacctaaaattcagtgtgcaaacagaaaatattgataaattacatggttttctaaggcagtc a score=3860 s hg19.chr6_ssto_hap7 4261552 73 + 4928567 ATAAAGAAAATTAACTCTTTTAGAACCAGGTGTTAAAAATGTTACACATAAAAT--------ATACATATAAAATAATAtt s canFam2.chr12 5444754 81 + 75515492 ataaaggaaattaacatatttagaactaggtggtaaaaatgttgcatatcaaattttgtgagatacagttaaagcagtatt a score=34166 s hg19.chr6_ssto_hap7 4261663 747 + 4928567 aataaaggacctaaaaattctactcaaaaatttggaaaaagagaagttgagcaaacctaaagaaatacgaagaaaaggagttataaagataagaatagaaagcaatgaaacagaaatagagaacaaaaaactaggtagtgaaaattaacatacttttgattccaaaagctgcttactt-aaaaatatttgtaagatattcagagttacaacaaggccgattatggataaag--ggagaaaaaatgaataaac-aaatacataatgaaaaag-ggggaacagctacagatatgacacagatataaagcat-----agagtgttatgaacaagtatatgctaataaatttgaaa-acctaggtgagatatgcaaattcctagaaacatttaatctatcaaaattagcacaaaaagaaatacaaaacttgactataccaatgagtattaaagcaatttttaaagttatcaatggcatctaataaaaaaatatatttttgaaaatgcccagatggtttcacagatgagttcta--------tcaaacattcaaggaacatgaaacttctatattatatacttttt---ccagaaaatagaaaaaa-actaaacctgattagctaattttatcagccgagtgtaatcttgactccaaattgagttgtggaaaactcaaggaaaaaaaataatagacccatttcaccttgaacacagatgggagaaaaaaataattatttatgaaccgaattcaacaatattacaaataataatac s canFam2.chr12 5445090 740 + 75515492 cataaatgacctaaaagtt---ctccaaaattttgaaaaagagcaattgagcaagcttaaagaaataagaaggaaggaaataataaagataagactagaaagcaat------ttaatagagtac-aaaaactatgtagtaaaaattcacaaaa--------ccaaaaactagtgacttaaaaaaaaattgtaagatattcagatttagaacaagactgatcatgaataaagcagagaaaaaaatgaggaaacaaaatacagaatggaaaggaagggtataggtacagatata--acagatacaaaacataatacaagatgtaatgaacaagtatatgataataaattttacattttttgatgagataggtaaactcctagaaaaacttaatctaatgcaattcacataagaagta----aaaatttaagtacagcaataaacattgaagaaatgaaaaatgttgataatggcatctgataaaa----ataattttttatatgcccacatggtttcatgggggagttacaccaaacatccaaacattcaaggaacatacaactcttatcttatgtggttttttccccaggaaatagaaaaaacattaaagttgtgtagctaattttatcaggctagcataatcttgatttcaaattgag--ataggaaattcaaggaaagaagacaataggcccatctcactttgaacatagatggaaaaaataaataattatctattaactgagttcaactgtattaaaaataataatac a score=12429 s hg19.chr6_ssto_hap7 4262696 320 + 4928567 aataatgatacatcaagatcaaatagggaatccttggaatactagggtggttcaatataataaaacatattgttgctataatttaccatattcatag-----------agaagtcatttcctttgctcagt---ctattaataaaagacatttggtaaagt---atatccatttgtgatttttgaaaaacag---ttaa----------ggaagcaggaatc----aaaactttcctattttggcaaaggttataatccaaaaaatctgtaaccactagtatacataacggaaaaaccttgggtatccaagacaagaatgttcactataattactAGCTTATCATAGCACTAAa s canFam2.chr12 5446031 346 + 75515492 aaaaataatatattgagatcaaatgagaaatccttagaatacaagaatacttcaaaatagtaaaata---ttttactataattcaccataatcatagactaaagaggaaaagatcatctgcttttcttaatgcataatttataaagtttaatttacaaagttaaatatccgtttatgatttttgaaaaaccagtcttaacttgttccttagaacccagaatcatataaaactttcttatcattgtgaagtttatattccaaaaaatatataacaagcagtctgcataatggaaaaatcttagatgcCCAAGACCA-----CTCACTATAATTACTAGTAAAATATAGCACTAGA a score=29082 s hg19.chr6_ssto_hap7 4263260 664 + 4928567 tagaccaacagtgactatgtaccatgaactgaggaatattattaattccaccatttgcatctgaggtTAACAATATGTCAATGACTTAAATAACATCATATCTCTGAGAGTAATTTCTCCTATATTTCCATGACAAATGTTAGATAATTTTCCATTTTTTCCATTCAACAAAATAAACAGGAAATATAATTAAAGAGTTCAATT-GAGGATTGGGATTTAGAAAGGAAGGCAGGAATTAAGAATAATCCTTAGTTCTCTTCCTA-ATTTGCA-CCTCTCTCACTGATACATATGTATTATTTTCTT--TTTATGTCTTTTAGAGTCTAATAAACATGTTTTATATTATATAACAAACTAGAATATATGGATTATCTTTGGTCTTCCTTACCAAGTTCTTAACTCTGCTGGCTCTGGGGCACTGGACATACCATGTAAGAAGAAAAATGTTTTAACTCCATTGAACTTATTCAGAAGCATCGGAAATTGGTTCAGCAATATTCAACTTTGCCCAGCAATGTTTATGAAAGTTTCATATATAGTATAGTATAAGTATGTGTAATACAGAATTTATGTTCTCAAAAATGAAGAGATAAAGTATGGAGAT----------------TCTAAACTCTGTTGACATAGAAGAGGGTGGATTTCTCGAAGAAACAGCCTTCTATAGAAAGTG s canFam2.chr12 5447728 631 + 75515492 TGGACCAATGATGACCATGCACCATGAACTGAGGAATATGATTTTTTA----------------------------GTTAATGAGTCAAAGAAAACCATATCTCTGAGAGCAATTTATTCTATATTTCCATGACAGGTATTAGATAGTTCCCTATTTTTTCCATCCAACTAAATAGA-------TATAGTTAAAGTGTTCAGTTTGGAGATTAGGATTTAGAAAGGGAGGATAGAAATTAGAAAA--TCTGAGATTATTCCCTACATTTACAGCATCTCTCTCCAATA-ATATGCATTACTTGTTTATTCTAAATCTTTTGGAATCTAATAAACATGTTCTTTTTTATATAATGAGCC----TATATGAATGATCTTTGGTCCTCTTTACCAAATTCTTAATTCTGCAGGTTACAG--------ACATACATTGTAAGAAGAAAAATGTCTTAATCCCATTGAGCTTATTCAGAAGCACTGGGAATTGGTTCAACAATATTCAGTTTTACCCAGCAATGTTTATGACAGAGTTGTAT---GTGTACTACAAGCATGTATGATGCAGACGATACGTTCTCAAAAACTCAGAGATGAAGTATATCCATACTACATCAATTTTTATCGAAACTCTGTGGACATGCAAGAGAGTGGATTTCTCTGGGAAGT-GCCTTCACTAGGAAATG a score=34953 s hg19.chr6_ssto_hap7 4264324 785 + 4928567 TGGCTCAAGGTGAAACTTCCAGATCAATGTGGCAGGAGTGTTGAGGAAGGAAGTGAACTCGGTTCTAACCAAGTAGGACAGCCAAATCATCACTGAAGTGTGGCACTGGCCTTTCG-CCAAGGTAACATGTGGCAAGGTTTTAGGTTAGGATAGGTACCAGGCAAAAGCTGGGTGACTCGATGGAGGCTTTT-GTGCCAACCTTCAGAGACtggctgcgtcagactgccctcaagagcatacaaaggaaaaaaga-caaattaaaagcctttaatccaaactcaagacatgaatgaaaaactgt-aaatgcctctatagcagttttaaaggctatcttttctcctgcaacccagcacagatatggctgagggtcaagcccgggggcttatgataaaggttatgaagttgtagaaatgtttgttgcatcatccaacagcagctgttgtgataaggcaagacccctggttgggatagacc-ggaccctgagatatgaaatagggacatatgagcagacacagagaagtctgagTGAGAACTATGAATCACCGCACCCCCTGAGGGTCCTTGCTGGAAGAAGCAGACTCACCgtattagttacctattgccatgtaatgaatgacacccgct--------taaaataacagacatttactatAAGGTGttactgggacaatgggggattttttaatatggattgtgtgtttgataatatggtatcaattttaagtatcttgggggtgatgacagtattagggttttgcaggagaaatgtccttattcttaaattatacatg s canFam2.chr12 5448754 731 + 75515492 TGGCTCAAGGCGAAACTTCAAGATAAATATGGCGGGAGTCCTGAGGAAGGAAATGGACTCCAAACTAACCCATTAGGGCAGTGAAA-CATCACTGAAGTGTCGGACTAACCTCACATCCCAAGTAACGTGCAACCAGGTTTTAGATTAGGAGAGGTACCAGACAAATGCTGGGTGATTTCCTTGAGGCTTTTTGTCCCTACCTTTATAGGCTGACTGTTTTAGATTGCCCTAGAGAGCATACAAAGAAAAAAAGAGTAAATTAAAAGCTTTTCATCCAAACTCAAAAAATGAATGAGAAATTTTTAAAAACCACTGTAGCGGCTT---------------CTTCTATAACCTAGCACAGGTATAGATGAGGGTCA----------------------------------TAGAGCTattaattgtataaacccatagggtattttatgctaagataaggccactagttggagtggatttggactctgagatatgaaatggagacatatgaacagacacagggaagtcagac----aactgtgaatcaccaaatccc-tgaatatctttgctagaagaagcagaccCATTGCATTAG----CTATCACCCTGTCAT-------ACCCACTGTATTGGTTACAATA-CAAACAtttactatggggcattattaggactataggagaaatttgaatgtggactgtgtatttgataacattgtatcaattttaagtgtgttgggggtgatggtggtattatggttatgtgggagaaatgtccttgttcttaaaacacacaTG a score=27701 s hg19.chr6_ssto_hap7 4265109 590 + 4928567 acaaaa------------------tatttaggggtcaagtggcataatttccacagattactctcaaattgtttaacaaaa-tggttcttcaacagtaaatggataaacaaaacgtagtctattcgtgcaacacagtactatgtaaacaatgaaacttcatcaactactgaaaatgtaacaacatggacgaatctcatagaaacaatattaagtgaagaagccagacttgcaga-aatacatactgtatgtttccattatctattgctgggcagcacaccaactccaaacttaatggcttaaaacaaaaataatcattttattatctctcatgaaactgtgaattac-tggactTTAAGAGCCACTGATGTAGTCCATGAACCAAAACACATATTCACGGCAGCCACTCCACCCAGCACCTC---------------acacctgtgatgtttactggctgcccatgggatttgaacacctttagagtactgtgaaatttcccctaccttttgagtcctgcctccctaaagtggaaaccagaaagctcacttcccctagccttctttgaagctagagcacctaagttccaccaattaaattcatccacctaagacttCAGTTACAAA s canFam2.chr12 5449706 610 + 75515492 ACAAAAAAAACACACGTGCCAAGCTATTTACGGGTGCCTTGTCATAATGTCCACAGATTATTTTCAAACGGTTTaacaaaaataattcctcaacaataaacagataaacaaaatgttgtatattcatacaatggaatactgtacaagtgatgcatgtgaaaaaattaat---aattcaataacatggaaaaatctaatagaaacaatactgagtgaagattgcagacacacgcagaatatacaatgtAtgtttcagttatctattgctgtgtagaa-accacccctaaacttcatggcttaaaacaaaaacaatcattttattatctcttgggagtcagtaggttaggTGGGCTTTAAAAAATACTGATGTAGCCCATGAACCAAAGCACTTATTCATAGCAGACTCTCCACACAGCATCTCTCATTCCATGtgtgaatactggttatgttttctggctggctatgggatttggaaatctttagaatattctaaaattttccctccctaatgagtcctgcctccccatagtagaaatcagaaaagtcaattccc-tagccctctttgaagctagggcacctg-----------tcaagttcatccacctgagacttccattcaaaa a score=32478 s hg19.chr6_ssto_hap7 4265746 762 + 4928567 CTGTATTTATTTCTCTGGCAAAGGTGACAGAAGAAGCAACTGTCTTTTGGGGAAGCGGTGGGttttttcctttttttttttttttttttAA------GTGAAGTTCCTGAAACAGAAGTGGTTTAGGAGGTGTCTTCAGTGGTGGCTGCAGCAACCTCCAGGTCCTAACAACAGAACCAACAGCAGCGTCTAGAAGCCATGGGGCAGCAGCAGTGGTGTGGCTCATCAGACCTGCTCT-------------------CTGCGTGGTCTGACCCTGTACATACATGTGCCTCTCATCCGTAGTTCCAGCATTTCCTCTCTAAAGTC-TAGTTCTGAGAGAAATTTCTTTGGTAGACTTTtcaaagttttatcaaactca---aagagggaaccagcaagaatacaagagccttgatccaaaga------gtatttgaaaaacagagctgtatctctctgtgaggaaataatttctaggctagagattcaaaatggctaacgtgctagagggcaataaaatcataaccttggtgttatcttctttaccggagaaaaaGAGAAAGCCAGCATCCCTTATCAGCTCTCTGCTGATTAACCTCTAATCGCACAGGGCTGGCCGGGTTCGTCTTAGGCAAATTACAATCCCTGAAACACTCTGGTTTTGATAAGGCAGAATTATGAGCAAAGGTTCAAGTGTGATATAAAATAATCAAGCACGTACAATTTTGCCTTATTTATAATTTT--GAAACACTTTTCCTACACAATTTCTGACCTTAAGGGGCAGAATTAACCAAATAA s canFam2.chr12 5450538 734 + 75515492 CTACATTCATTTCACTAACAAAGGTGACAGAAGAAGCAACTGGCTTTTGGGAAAATAGTGA-------------------------TTTAAAAAAAGGAGAAGTTCCTGGAACAGAAGTGGTTGAGGAGGTGTCTTCAGAATTGGTTGTGGTAA------------AGGAATAGAACAAAGAGCAACATTTAGAAGTAGTGAGGCAGCAGCAGTGATGTTGTTTACCAAACGTACACTGTGTGTGTGGCGGGGGGAACAGCGTGGTCTTGTTCTGTTTATA------------ATCAATTGTCTCAGTATTTCCACCCCAAAATCCTAATTCTGAGAGACATGTATATTTTAGACTTTTTGAAGtcttatcaaactcattaatgaaggagccagtaagaataaaggagacatgattcaaagaccaaaaacaattgcaaaaccaagatataccta---gtcaggaaa-acttgct--gttagagattaaaaatggttaatgtacaacaaggcaataaaatcataaccttgaccttatcttctttaccagagaaaaaGC-AAAGCCTCCATACCTTGTCAACTCTCTCCAGATTAATCTCTAATAGCACAGGGCTGGCTGCGTTCTTCTTACTCAAGTTA---------AGACACCCAGATTTTGATCAGGCAGGATTATGAGAAAGTATCCAAATATGATATTAAGTAATCAAGCAAGCAAAATTTTGCCTTATTTCTAATTTTTAGAACAATTTTTCCTACGCCATTCCTGTCCCCAAGGTACAGAATTGACCAAATAA a score=1793 s hg19.chr6_ssto_hap7 4266508 91 + 4928567 AACTTTTCAGAAATGCTCTAATTCAGTTCCACTCAT----TTTATCGTCTCTATTTGGCCTGTTTTAGGGCTAAACCCA-------------------------GAAGCAAAA---TCTTCTT s canFam2.chr12 5451475 123 + 75515492 AATTTTTCAGAAATGTTTCAATTCAATATCATTAATGGGATTAGTCTCTTTTATTTAGCCAGTTTAGGACTGAGACATAAAGAGCTCCTTGTTACATGTTTGGCAAAGCAAGAGTCTTTTTTt a score=607 s hg19.chr6_ssto_hap7 4266599 15 + 4928567 CAAAATGAATGTATT s canFam2.chr12 5451793 15 + 75515492 CAAAGCAAAGGTCTT a score=12356 s hg19.chr6_ssto_hap7 4266698 259 + 4928567 CAATAATATTTTTAACCTGGACAAAATTAATCTA-GAAAATTGAGCTACTGTTTTTTATTTGTCAGCTTTTACCACATTGTGGGTTTGAGACACA-GGTAGTTCTTTTGATAGTACAGCGTTAATTTAAAATATAAAAATCATGCCAAACACATCTAATTACTTTTAGCTTCCTTCAACAGTAGGCGGAGGAAGGTGAAAAATTAAGCCTTTTGCGCCACCTAGTGGCCAAATGGGTAGTGGCTGTCTAGTGAGAAAAAAC s canFam2.chr12 5454263 252 + 75515492 TGTTATTTTTTTTTACCTGAACAGAATTAATCAAGGAAGGTTGAACTTCCATTCTTTATTTGTCAGCTTTTTCTACATCATGGGTTTGATAGACAGGGTAGCTCTTTTGATAATACAGAATTAATTTAAAATATATAGAGCATGCTAAATGCACCTAATTACTTCCA--TTCCTCCTACATT-------TTATGATAAAATATTAAGTCTTTGGTGCCACCTTGTGGTCAAGTAGGTAATGATTACCTAGTGGAAAAAAGC a score=15719 s hg19.chr6_ssto_hap7 4266973 400 + 4928567 GAAAAATAGC-TTGACAGTGTTAGTATTCTGAATTCAGGGTATGAGGTTGGAAGAAGGCAACAACAAAAAAGAATTTTCAGAGAAACTGGTCACTT----AAGTGCATAGGTACCTGAGAGTGAGCAATTGTTATAAC-TTTGATATCTCAATAACCAGAGTGACAATAAAACATTTGAAAATAAACATAAAGAAGGTAACAATTATAAGAAACTTTAGGTGTTTCAGAAGCAAATGGTTTTTTGTTGTTGTTTGTTTTTAAAATAATTTAAAAACTTGATGCTATCAGCACAAAGCACTAAAAGTTATCAAGGTATTAAGTGAGAGCATTCTGATAAGAAACCACCGCTAGCTGGGCAGATTATGCTAAAGGGAAAGAAAAAGTTTTT-TCTCTGTCTTTAAGTGT s canFam2.chr12 5454553 378 + 75515492 AAAAGGTATCATCAACAGTTGTAATATCCTGAATCCAGGATCTG-GGTTTCAGGAAAGCAACAACAACAA--AATTCTGGTCCAAACTGATTACTTAGTCAAATGCACAACTATCTGAGAGTGAGCAATCGTTTTAGCTTTTGCTCTCCCAATAACCAGAGTGACAGTAAAACATCTTAAAATAAATATAAAGATGGTAAC----ATGAAAA------------TTATAAGCAAAGGGATT-------TTACTTGTTTTAAAAATGATTTGAGAAAATTACAC--TCAGCACAAAGCACTCAAAGGTATCAGGTTACTGAGTGAGAGTATTCTAA-AATAAATCTTCGCTAGCTAGGCAGATTATAATAGAGGTAAAAAGAAACTTTTTCTACCTCTTTTTAAGAGT a score=12411 s hg19.chr6_ssto_hap7 4267373 298 + 4928567 AGAGTGT-----ATATTCCAAGATCAATTTTAAATTACAAATCCTCTCCTTTTTTGCTTATTAATTCGAATTCATCATTACGTGTGT-GTTTTACAGAAATACATACATAGTTGAATGACAATTTTGTTTAAAACTTTCCACTTTAGTTTTAAAATGTAGTTAATCTTATCAATACAATACATGAATGTATAT-CCACACTAAGTTTACCACCTTAATTTGAGTTTTGCAAAAATTAAATATGGACAAAGGTATATATATAGAAAGCCACTTAGTGACCCAATA----ATCTTTCTCTCTATGATACAC s canFam2.chr12 5455131 290 + 75515492 AGAGTATAATAAATATTCCAAGACCAAGTTTGAACTACAAGTTTTCTACTTTTTTGGTTGTTAATTTTAATCTATCATTATGTATGCAACCATACAAAAATATGTATATAGTTAGATGACAGTACTATTTAA---------------CTTTAAGATGTAACTAATTTTATTAATAC--TACACTAATATGTATGCCACATTGAATTTACCACCTTGATTTCAGTTGTGCAACAA-TGAATACAGATAACAGTGTATATATA-AAAGCTGCTTAATGACCCAGTGCTTTCTCTTTGTCTCTATGAAGTAC a score=10931 s hg19.chr6_ssto_hap7 4267671 349 + 4928567 TTAAGAATTTTTTAGACAATAAAAAGTCACTTATTAACTAGCTCAGTGAAAATTAGTCCAAAGTAACAAAATC------ATTTGAGGCTGCAAAACAACAATATCACTATTGATATTAGGAGTTTTTCAAAGAGGTAAAATTCTAAAATTTTTACATAGAGTGCAAGCTAAGTAGCTAAGTCAAATGACTTGCAATATTTTTCTGAAATTCACAAGAGCCAATAGTTAAAAAAAAG------CATCTCATAACA--TTTAATTAAAAATATACATTTTCATTTAAGTTTGCTTCCCACAAACCACTGACACACTCattgacacagtgaatgagtctagtgacaagaaacaaatcctttttgtt s canFam2.chr12 5455671 336 + 75515492 TTCAGAATTTTGTGGGTAATCCAAAGTCACTTATTCATTAACTT-----AAATTAATCCGAAGACATAAAATTCATTTAAGTTGAAATTATAAAGCAATATAATTGCTATTGATCTTACAAATTTTTCAAAGAAGCAAAATTTTTAGA-TTTCACAAAGA----AAGTGGAGTACCTAAGTCAAATGATTT-TGACA-TTGTCTAAAGTTCACAAGAGCCAGTCATTTAAAAAAATAGAGGCTGTCTTCTGACAATTTGGATTAGCTGCATTTGTTTACCTTTAGGTTTTCTTCCCATAAAC---------------TGAGACAACAAATGAGTCAAAGAATAAGGAACAAATCTCCATTTTT a score=80964 s hg19.chr6_ssto_hap7 4275022 1897 + 4928567 TCATATTATTATATTTTATTGTAGTATGTGTAGTGTATACTAACTTAAAGGGAAAAAATGTAAACAAAATGAAAGACATGGGGAAAATGGCATCTTGCTTTAATCTTCAAC-TTAAAGTTACCCTTAACAATTCATTTATACCATTATGCCAAATTGTAGTC--ATCCCTGCAGAATTTTAGAC----AAATGAA--AATGGACAAGGTAACACCAAAGAGATTAAGCACAGAAAGTGATATTGATTAAAAAGTTGAAAGTAAAATCTACCTTGGCTAGAACTGAACATTCAGATCCA----TCTCTAGAGGAAAATCTAACATGAATCATATGGTTCCTATTTTGACTAGTTCA-TAGCATATCAATTAGCAACTTATGACT---TGAAAATACTTTTTCTCAGCTGCATTTGACTACCTAAAATCCTACCGAGCAC-GCTGTTTGGCATGTCTTACTCCTCTGAAATCATCATCTACTTTCTAAAAACCAGAAAATTAGTTTGCTTGTGATTTAAAATTCAAAAAAGTTTGTAGAAAACA-CAAAAAGAATCAACTATTTAAAGTCTCATCCTTTTCTTCTCTCTAAAACAGCTACTTCTACTAAAAGAAGAGTATGTGGATACTTTCTAAGAACTCAAAAACGAGAAAACCAAAATCAGAG------GGTGCATGAATATATGTGCACAAGTATGTACAGATTTAATCTCTATATTCCCTAAAACATATTTAAAC-----AGATAATCCCAGCATTCTAAATTCAGAAAGCAAAAATAAA--CAGTTTTGTTTCTAAATCAGTGGTATTACTAGCTGAAATGTTTAGT-AGAATACTGCACCTATAGTTCAGCAGTACTTTGATTATGTACCATTTAAGAAA-----TCAAAATAATAAGCACATTCTTCTAACAGCAAAGAATTCTCCCACTTTTTATTT----TGACATACTGATATTTCCATAAACTTGCAAGTGGAAAATAAGCTGTTCAATAAAAGCCTACTTACATATATAATATACAGAAATTATTTTAGAAGTCTGTTCATATAACAGATTATTTTGGCACTAACAAAAATT--GTATACAATCCATCAGTTGTATGGCTAGAAATGAAACCATCACTAAACCAAGACACACAGGGCTTTCCTGCACTTAGTTTCAGGAAAAAGTTCCAAGT--AATTCTTACTGTGTTAGAAGAATAAAGTACATTTGTCATAGTATACATTATCATATTCCCTTAAAGCAGGGACTA----AAGTTTTTAAATTAAACAATGTCCATGATTACTTCTGTCTGTACATTCAGGAATAATCATATCACTGGTTACATACAATTCTCTCCTCATGCaaaaaaaaaaaaaaaaaaaaaaCCTGTTGTTTTCTTAAGTCTAATTAAGCCAAACAA---ACTAATAATAGCAATTTAATTAGCAAGCTATAAATCAGAGAGGTATAAAAATTCAGCAGTTAAACTGTATTTCCCACCTATAGTACTGCTGCTACTCAACCATTTTCTTCATGTATTAGAAGAATTAATAGGCATTGATGGTCAAAATAAGAATTTCAATATTGCAGCAAATGACAGAAGA-GTGAGCGAA---AGAGTTCCTAATGT-GTGACAGTCTTAATGATTCTTTA-AAAGGTAAAGGATTGTGTGCATGTGTGTGGAAAGGAGTAGGAAATAAAAGTAGGAGGTTAAGACAGGTATTTAAAGGGAATGCCAAGATAGCTGCATTAGAATCTTTATTT-----TTTAAAAAACTGA------AGTCTGCCCAGA----GTACCAAAAACATTAAAAAAAAAGAGCAGACATTGGTGCAAGTTTAACCTG----------TGAGAAAAAAGCTAGTTTTGATGAGAAAAAGTTCAGTCTTTTCCTTGTAAATACAAAGAAATGCAACAGGAATTTTAAAGGTAGTAGGCCAGAAAATGTAACAGTAACTCTTACAATCCt s canFam2.chr33 827401 1838 - 34424479 TTATTCTACTATAGTTTCTTACAATGTGTTTACTGTA--CTAA---------AAAATATTTG-------TGAATGTCTAGGGGAAAATAGTGCTT--CTTT--TCCTCAATATTCAATTTATTCTTAACAAT-CTTTCATACCACTATATTGATTTTAAAGAGGATCACTGCTCAATTTCAGACTGAAAAATGAATAAACAAAAAAGATGATAACAAAAGGATTAAGTA---GAAGTGATACT----AAGAAGTTGAAAATAAAATCTACCTTGGCTA--ACTGAACACTAACATATAACTTTCTCCAAAGGAAAATCTAACTTGAATCCTAGACTCATTTTTTATAACAGTCCAATGCCCCATCAATGAGGAACTCATGACACGATGAAAACAGTCTTC------------------------ATCCTACTGAGCATTGTCATTTTTCATGTCTTATTCCT--GAGGTAATTACCTACTTCCTGAACCCAGAAATGAGAGTTTGCCTGTGATTATAGTTTCAAGACAGTTTACAGAAAACAGCCAAACAAATGAGTTACTAAAGGTCTTA-CCTTTTCTTC--------------ACTTAT-CCACATAAAGAGTATGTGGATACTTTCTCAGAACTCAAAA-TGACAATACCAAGAACAGAAATCTATGTGGCATGAACATATATATACACATATGTATAAGCTTAA-------ATTCCCCAAAGTGGATTTAAACCAGTAAGAATACTTCAACATTCTAAATTCAAAAAGCAGATATAAATGCTATTTTGTTTATATATCAGAGGTATAACGAGCTAGTAAGTTTAGTTAGGACACTA----TATAGTTTAGAAGTACTCTGATTGGATCCCATTAAAAAAAGTCATTCAAAATGATAGGCACATTCTTCTAACAGCAAAGAATTCTCCCACTTTTTATTTATTTTGACATGTTGGTATTTTCATAAACTTGCAAGTGGAAGATAAGCTCTTCAATAAAAGCCATTTCATATACACAATATACAGAAATTATTTTAAAAGTCTGTTCATATAATGAGTTCTTTTGGTACTGACAAAAAATTAAGATACAAATAAT--------TGACTAGAAATGAAACTATCACTAA-----GATACGCAGGAG----CTACACTTCATTTCAGGAAAAAA----AAATTCAGATCTTACTGTGTTAGAAGAATAAAGCACATTTGTTATAGTTTACATTATCATATTCCCTTAAAGCAGGGACTATTTAAAGTTTTTAAATTAAAAAGTATTCAGGATTACTTCTGTCTGTACATTCAGGAACTATCATATCACTGGTTACACACAATTCTCTCATCATGCAAAAAA----------------TCTGTTGTTTTCTAAGGTCTAATCAAGTCAAACAATAAACTAGTTACAGCAATTTATTTAG-AAGCTGTAAATCAAAGAGGTGCAGAAATTCCACAGTTGAATTGTGTTTCCTGTCTATATGATGGCTGCTCTTTAA---TATTCTCCATGTATTAGAAGAAT----AGGCATTGATAGTCAAA-TAAAAATTTCATTGTAGCAGCAAATGATAGAATATGTGAGAGAAGGAAGAGTTCCTAATTTCAAGACAATCTTTATGATCCTTTATAAAGGTAAAGGACGATGTGTGTATATGTGGAAAGGAGTAAGAAACAAAGGCAGGAGGTTAAGACAGGTGTACAAAGGGAATGTTGAGA---CTGTATCAGAA-CtttatttatttatttaaaaaaCTGATCTCAAAGTCTGCCCATCAATTGTACAAAAAACAGTCA-------GAGCAGATGTTAGTGCAAGTTTAACCTGATAATTTATTTGTGAAAAAAGCTAGTTTTGATGAGGAAAAATTCAATCCTGCCCCTGTAAACATAAAGAAATTCAAGGGGAATTTTAAAGATAGTAGGCCAGAAAATGCAACAGTTACTCTTATAATCCT a score=36007 s hg19.chr6_ssto_hap7 4277236 543 + 4928567 TTTCAATTAAACAGACAAATCAAGTTGAAGACAAGTGTTAAAATACTATTCAGCCTGAATATTTATCAGCATATATATCCTGTTGTTC-AATTGGCTTTTGGTTAAAAAAAAAAGTCAACAAAC---TTTATAAGAGCTATCACCACATTTAGA-GTGATGAAAATAAATTAGTTCCCCCCCCCCAAAGATATTGTTT-AACCTCTAAAGCATGAAAAGCTATATAATAT-----ACAAATTAACCAGTATTTTTACAAAAGTAATACAGTTTTGGACTGATGATATTACACCGTATTTGTGGTAAAGTACTAGGCACAAGAATATATATATCAATTAGGCATTTTCAGTCTAATCAGTCTTTAAGGTTTTCATTTAATTCTTGGCAATATATAATAACTGGTATGCACTTTGGTACTTAAGTCATGACTTGTGGAGAACGAGAAGCAATGTATTATAGCAACGGGGTTCATATCTAACAAACAATAAGAGTGTTGAACAAATCCCTTCTATGAACTTCGTGATTTATTTTGCTGTTGGTCACTTGCAGTAGAT s canFam2.chr33 829239 545 - 34424479 TTTCAATTAAACAGACAAATCAAGTTGAAGATACATGTTAAAATACTTTTTGCATTGAGTATTTACCAGCTTATATAATCTGTTGTTCCAACTGGACTTTGATTTAAAAAAAAAAAGAAAAAACCTTTTTATAAGAGCTATCAC---ACCTAGAAGTGAAGAAAATAAATTAGATCCCCCCA---AAAGATACTATTTTAACCTCTAAAGCATAAAAAGCTATATAATATCTTATACAAATTAACCAGTGTTCTTACAAAAGTAACGCAGTTTAGGACTGATGATATTATGCTATATTTGTGGTGAAGTACTAGGCACAAGAATATATGTATCAATTAGGCATTTTCAGTCTAATTAGTCTCTAAAGTT---ATTTAATTCTTGGCAATATATAATAATTGGTATGCATTTTGGTACTTAAGTCATGAATTGTTGAGAACAAGAAGCAGTGTATTATAGTAACAGGGTCTGTATCTGACAAACAATTACAGTGTTGAACAAATCTTTTCTACGAACTCTGTGATTTGTTTTGCAGTTGGTCACTTGTAGTAGAT a score=13132 s hg19.chr6_ssto_hap7 4277779 169 + 4928567 CCTTGATTTGATTCTTCCGTATTCATGCTTTCTCCATGTGCAGTCTCTAACATTTCTTCAACTTTGTCATCATCGTGTAGGTCTTTTGAAATTAATTGTCTAGCTAGTTTGATATTGAGTCCTTCATTGTAGTGAAGCGTCCTTCTCATTTCAAATTGTCGCTTTTTTT s canFam2.chr33 832947 169 - 34424479 CCTTGATTTGACTCTTCCGTGTTCATGCTTTCTTCAGCTGCAGTCTCTGACATTTCTTCATCTTCCTCTTCATCATGTAGGTCTTTTGAAATTAATTGTCTAGCTAATTTAATATTCAGTCCTTCATTGTAGTGAAGCTTCCTTTTCATTTCAAACTGTCGCTTTTTTT a score=7699 s hg19.chr6_ssto_hap7 4277948 93 + 4928567 CTCGTTCTTCAGGTGAGAGGTCACTATCCTCCTCTCCACTGCTTTCTTGTTCCTGAACCTGATACTTTGGCTCCAAGCCTTCAGCAGCAGCTA s canFam2.chr33 839130 93 - 34424479 CTTGTTCTTCAGGTGAGAGGTCACTATCTTCATCTTCACTGCTTTCTCGTTCATGAACCCGATACTTTGGCTCCGAGCCTTCAGCAGCAGCTA a score=4583 s hg19.chr6_ssto_hap7 4278041 79 + 4928567 AGTTCTTAGC-AAGCTATCTGTTGCCATAGCTTCAGTGGTTTCTGTATCACTACATGCATCTTCATCATCACCCATCGTA s canFam2.chr33 840097 80 - 34424479 ACTTCTTAGCTAAGATATCTGGAGTCAGGGTTTCAGTGGTTTCTGAATCACTTAATGCATCTTCATCATCACCTACCATA a score=9808 s hg19.chr6_ssto_hap7 4278120 110 + 4928567 CTATGGTAAGGAGTGCTTGGTTCATCTATTTTCATTAAACCATAGTCTTTGTCTGCTGGACGATATGTCGCCAGGATGTTCATTTCATCCCACTTCTGGGATTTTTTGCT s canFam2.chr33 843077 110 - 34424479 CTATGGTAAGGAGTGCTAGGTTCATCTATTTTCATTAAACCATAGTCTTTGTCTGCTGGATGATATGTTGCCAGGATGTTCATTTCATCCCACTTCTGGGATTTTTTACT a score=5929 s hg19.chr6_ssto_hap7 4278230 120 + 4928567 CAGCTGCTCGTGGACACTCCCACGGGGATGTTCGGCCGACGCCACCATAGAGGAAGTCGTAGAGGTGTTGTCCTTCAGGATCCCCTTGAGGGGCCGTTGCGAGGCCGTGGAGGCCGCCAT s canFam2.chrX 36938336 120 + 126883977 CTGTACCTCCTGGATGTTCCCTCCGGACTGCGGGGAGGAGGCCGCCACAGAGGAAGCAGTGGAGCTTTTATTCTTCAGAATCCCCTTGATGGGCCGGTGCGAGGCGGCGGAGGCCGCCAT a score=3296 s hg19.chr6_ssto_hap7 4278350 194 + 4928567 TGCCGGGTGCTCCGCCTGTCGGCTCAGGGTCGCTGCTTGGCGTGGGGTCCGCGAACAGAAGGGTCGGCACTAGCAGAGACCAGCAGGCAGACGCGGAGCCCGCTCAAGGCTAAAGCGGCCGCACCTGCTGCCTCGGAAAGGGGTACCGGAGCGGTTGTCAAGACACAATGACCCCGACGCCAGACTCAAGCGGG s canFam2.chr12 24445046 158 + 75515492 TGGGGGTTG-----------GGCTCAGCCTCACTAATTGGCACCAGATCCAGGAA-------------------GGAAAC--GCGAGCTGCTGCAGAGCCCTCCTGGGGCCAGGGTGGCTGCACCAGCTGTCACGGA----GATGCCAGAGTCAGGGTCACCCCACGACAACCCCCATGCCAGGGCCGACTGGG a score=3105 s hg19.chr6_ssto_hap7 4278544 44 + 4928567 GAAAAGCGGGCCTAGAGCTCCAGGGCGGGAGCGACGCCGACGCc s canFam2.chr33 857758 44 - 34424479 GCACAGCCGGCCTAGCGCCCCAGCGCGGGAGCGACGCCGACGCC a score=12194 s hg19.chr6_ssto_hap7 4281850 291 + 4928567 ctaatatagctagtatccatata-----aaaagagattaggacatacatacacagggggcagtccataggaagatgcagggaaaagacaaccatctgccagccaaggacagagacctcggaagaaaccaaccctgctgacaccttgatctcacatttctagactccagagccaggaggcaataagtttatgttgtttaagccattcagtctgtggta-tttcttatggtagccctagcaaactaatacaTCCTCCTATATTTGGACATAGGCCTGTCCTTCTTGATTAAAGGAATGT s canFam2.chr12 5458638 291 + 75515492 ctaatatgactggtgtccttttataaggagaagagattaagacacaggcatacagagggaaggtcatgtgaagacacagagagaagacggccatctccaagccaaggagagaggtttcagaagagattgaccccactgacactttgatatcagacttccagctttcacaactgtgagaaaataaatttctgttgtgtaagccttacagtctatgttactttgttatgtcagcccaaggaaattaGG------TCCTGTATTTGGCCCTAGGCCTAATCCTTATTAAGGAAGGAATTt a score=21221 s hg19.chr6_ssto_hap7 4282141 560 + 4928567 AAAAAT---------AAGACTGTTGTCAAAGTTTTAACAAGACTTTATGAAGGCTTGGGCAAAATTGAAAAAGAAAAGACAATAGAAAATTCTTCCATTCTGATCACAGATATTATAGATGTAAGAGATCACAGGCTCCAGTCATCTAAGGGTTCTCCAACTAGAAATAGA-------CGgctgatgctactaatacctgcc-atgttccttgggccttaccactgtagtgcacactggctggac-------------atttgcatca--ttcctgaaggcttcctc-aaagccaagaagggccactctgcccgactcacagcagactagaagggccgaagagttcacgtgtcaggcagcagccttcaa---ccaatgggaattgatgtacaattgcccaactccctccttccgtggctgggttaactctgaggca---agtgc------tttcccagaatttccccaggggattaagttccagtcattcacccttcgttggctgttttcccttcccaatcttttactc-----agctgctactgaagtttcatgcacctccaaaataaattactttcattcatgtccctgtgtcagggactgcttctgg s canFam2.chr12 5459124 580 + 75515492 AGAAATTTCTAAGGGAAGACTGT-----AACATATAATTTGATTGTACTGAGGTTTGGGCACAATTGAAGGA-AAATGAAAATAGGAAACCCTTGAATTCTGATGGCAAAGAATACGGATGTTAGAGACCATCGGCCCC-----TACGAGGATTTTCCAACTAGAAGCAGAACAGGAGTTGCTGTTGCTACCAACACCTGCCCGAATTTCTTAGGCCCTACCCCTGCACtgcacactggctgggctcctactgctagcacttgcatctctttcctgaaggctttctccaaagctctggaggtca---ctgccccactcacagcaaactaaaagggacagggaattcatacaccaggaagcagttttcagtgtctagtggaagtt---------------agctcccccgttccccagttgggatgactctgaagcatgcagttcacatcatttcccagagttcccctacaggattcagctccagtcattcacacctcattggctgtcctcccttccttgtctaactcccccaaaatctgctattgaaatttccc-cacctccaaaataaactgctttcattcatgtccttgtctcaagaactgcctctgg a score=8418 s hg19.chr6_ssto_hap7 4282703 262 + 4928567 gaaaccaaacgaaTGCACCCCGGGTTAGCTTCTAATTTGCTTCACAGCAGTAAAGGTCAACTTTTCTTTGC--ATTACCCAAGAGAAAACTTAGCCATTACC--TCATCATGGTGCTTGGATCCCTAGAACCCTGTCTCTCATGAAACCCTGATTCCTTCCTTTCCTTGTCAAGATCTTTCCTTACCCAGCATGGATGACAGTCCATTCTATTGAGTACTAAG-------------------------AAAAGAGAGTTTAGAAACTG------TCAGAAATATTTTTATTTCATTC s canFam2.chr12 5459993 268 + 75515492 GAAACCAAAGTAAGGCACT--AGGCCGACTTCTTA---GCTTCACAGCAGTACAAGTCAACTTCTCTCTACCCATGGCTCAAGAGTAA--TTAACTGTGACTCTTGATTGTGGTGCGTGGGTCTCTAGCACCCTGTCACTCA--AAAC------TCCTTATTCTTTTTGTTG--------------CCAGCACGGATGACAGCCCAGTCTATTGAGtattaaataaagatagtttaaaaaaaaaaaaaaaaagatagtttagaaattgaattaattagaaatatttttattCTCTTC a score=8739 s hg19.chr6_ssto_hap7 4282965 322 + 4928567 AAAT--------TTGTAATATTCCGTAGACCAGAAACAGCACACTC--TTTGATCCCATCCTTGTATGCCCAAAATATCTGAGTTGGAGGAGGCACTGACCCTCTGTCACACAGTTTAACTGGATTACAGAGTGCAAGACCCCAAAACCAGTTCCTGACACTCTTTCTGTCTTCAGCCTGTGGATTCT-TATCACTTCCACAG-AAGAAAATTGGCTCTAAGATTATCCGGAGTACTTCCCAAATCTATTATTTATGGAACAAGTGCTGACTTCAGATATCTAGTAATCTAAGGTTTTTCATCTCCAAAGACCTTTCTTTCATTTGGCCTCTAC s canFam2.chr12 5460568 295 + 75515492 AaataataataataataataataataataaCAGAAACTATACACCCCCTCTGGGCCTGCCCTTGTATTCCCAGATTATCTGAGTGTTGGCGACCACTGACCATCTGTAACACAGTTTTAAAGGATTATAGGGTATGAGGCCCCCAGAC-------TGGCACCCTCTCC----TTAGCCCACAGATTTTGTGTCAGCTCCAAGTCAGGAAAACTGGCTCAA----------GAGTCCTTCACAAATCTGTGATTTATGGCATAAGCACTGGCTTAAGACATTTACTAATCAAAG------------------CCTGTCTTTCATCCTGTCTCTAC a score=5585 s hg19.chr6_ssto_hap7 4283634 314 + 4928567 CATGGTTTTCAAATGTAAAATTTTAAATGAAAAATCTTAATCTTTTGGTCATTGCTGTTTTGCTGTGGTCTGTCTCCCATGGCATGA-GGGGAAATGCGTTATCTGCCTCTGTT-GTAGAAAGATGCCTGAGGAAAATAATCCTCAGTTGATGTCTCAGGATTTTTCCTGCCAT-ATACCTGGAATGTGTAAAAGCACAGGAAATATCCTAGTATAACACAAACTACACACAGTTACCTTTGGGACCTAGAATGGAATGGGGAGGAGGGAGAAACAAAGGAGACCTTTTACTCCGTACCCTTCTGTATGGTTTGAAC s canFam2.chr12 5460863 196 + 75515492 CATGGTTTTCAAAAATAAATTTTAAAATCAAGAG-CTTATTCTTTTGATCATAATTGTTCTGCTGTGGTCA----CCCAAGGTATAAAGGGGAAATGCCTTATCTGTCTCTGAAAGTAGAAAAAC--------AAAACAATCCTCATTTGATATCATAGAATTTCTCCTACCATTATACCTG------------------------TCTTA------------------------------------------------------------------------------------TACCATTCTATATGGTTTGAGC a score=41105 s hg19.chr6_ssto_hap7 4284256 1387 + 4928567 CTTTTATAACAAGAGTGAATCCAGATATTTACTATGTAATTTTCTCATTTAGTCTAATCATTTAGACTAAATGATTAGAAGAAACAGGACTTAAAAAGAAATGAATGAATTTCCACTAGGGGGTGGTAGAGAATCATAATCCATATCA---TAGTCTGAAA---------CTGAAGGGCAAAAGGAAATAGTCA---AGTTCAGAATCACATGCTGCAGCCCATTTGTAATTATAAATCTTTATTAACTAGCTCAGTGTGAGATCTAATTTCTTCATAAATGCCCAATAATATATAATATGCTCTTTTGAGCAACGCTTTTCAGATTATGTTCTCATACAGCCTTTTACAGCCCTTTACAGCTTTTCTGTAAACTGGGCTGAGATGTACCACTAAATGA-AATTGAATGATAGGAGTCCATTGTGGTTGGAATAGATACACACAGTGATTGATTtaggtaga--ttagaaggtggatggatagatagatagatagatagat------------agatagatagatagatag--ataTGCGC-------ACACACATTCCTCTCCTTGAGTCCCCCTGGGTAAGCCGAGGCATGAGTACTCTGAAGGAAAAGCAACCATGAGTGAGCTGCAGCATCCTTACTTAACCTCCAAACTTAACCTTTGTTGTAATATATATAGAAAAATGAGTTCCGAATTCCCTCCTTAATCTCCAACATGCAGGCACTATGCCTCTGCCCAGTTTCTTTACCCATGCCTTTTATTATATCCCATCCCCAACTGAACCCTATCTCGACCTGGTCAATAGGTGTGAGACCCAGATATTCTTATCCGGGAGATGCTATTTCTTTTTTTCCAGAGGCCAGAGGTGGTTTTTAGTAACCACCTGTATCATTTTGCAGGGGCTTCTTAAATGCGTGGCCAGACTCACCTCACTGTGCCTAGGTGCCAATATGGCCTCTCAGCTTTATTCCCCTTGCAATCCAAAATCTGCCAGAACTGGACAGCAGTTTGATCCTTGA---------ATTAGACCGTGGTTCATGA-TGCTTGCTTC----------TCACCCTCCCACCAGCTGTGCTTTAT----TTTTCTTTGATTCTAACT-------ATTACAGAAAAGACAAGTCAGACTCCTTCATCGCTGGGCAAAGTTCCAAGTAAACTGCATTGGGAATCCTTGGCATTTTAACAATGGCTCACTGCTCCCCTTGTGACTAATGGGCAACACAGGCCTGTTTATGAGTTC-AAGTCTCTGTCCCTGGATCATGTAATTTTAATTGTTCTGTTACTTCATTTCAATCCTGGTCCCCACAGCATTTTTCTCACTGTTCATTTTCAAATTTAGTGTCCAACCTATTACTGTGTGCTTTTCTT------AATCCCTAGACCAAGCA----CTCTCTGGCTTGCTCA---------------TTTTCCCACTTGGGCACCCTGGATCCCAGCCAGAG s canFam2.chr12 5461059 1274 + 75515492 ATTTTATAACAAGAAAGAGTTCTGATATTTTCTATGGAACTTTTT----------------------TAAACAAT---AAGAAATAGGACTTTTTT-GTAAGGAAGGAATTTCCACTAGGTGGTAGTAGAGAATCA------ATATCAGTCTAACCCAAAAGAAATGTTCATTAAGGGCAAAAAGAAATGTTCATTAAGCTGAGAATCAAATGCTGTAGCC-ATTTGTAGCTACAAGTGCTTATTAACTAGCTCAGTCTAAGGTTTAATTTCTTCAGAAATGCCAGATGATACATATCATGCTCTTTTGAGCAATGTTTTTCTACTTACGGTCTCCTATAACCC----------------ACTTTTCTGTAAACTGGCCTGC-ATCCATTTATACAGAACAATTGAACAACTGGGGTCCACTATGGTTGGAACAA-----------------------TAGAATTTGGAGAGGAGACACACTGATA-ATAAAAACACGTACTCTTTTCCCTTAAGTGAAGTAAAATTATAGTAATATACGTTGGATCTGCACACATTCCTCTCCTTCAGTCTCCCTGGATAAAATGAGGCAAGTGTATTCTGAAAAAGGAGTAACCAGAAGTGGGCTCCAGTATCCTTACCCTATCAACATGTTTGACC-------------------------------------------------------------AGACTGCATCAATGACCAGTTGGTTTGCCCATTTCTTTTATTCTAGCACATCCTCAGTT----------CTGACCTGGCCAATAGGTGTAAGACCTGGATATTCTCACCTGTGATATGCT---------------GAGGCCAGATTTGGGTTCTCACAACCACCTGTATCCTCTTGCAGGGACACTTGAAATTTGTGGCCAGATCCAGCTCATTATGGCTGGGGACCACTATGACCCCACAGACTTATTTCCCTTGGGATCTAAAATCTTCCTGTACTGAGTAGCAGTTTAAT-CTTGAGTGTGTTCTACTAGACCCTGGTTCATGACCCCTTGCACCGCATCCTGTATCGCCCCCTCCTTGGCGGTGCCTTATTTCATTTCCTCTGATTCTAACTCATGCCAATTCCAGGAGAGACA---CAGTCTCCTTCATCACTGGTCGGAGTTCCAAGCAAATTGTGCTGGAAATCC---------------------------------------AATGGGCGAACCAGACCTATTTCTAAGTTCAAAGTCTCTGCCTCTGGGTCACTTAATCTTGATCATTTGGTTATTTCATTTCAATCCTTG------AAGCATTGTTGTTACTCTTTGCTTTCAAATGTGGTGCCCTGCTTGTTCTTGTGCTCTTTTTTTTTTTTCAGTCCTTGGACCAAGCACCATCTTTCCAGCTTTGGCAGAAAGCCAAGTAAACTTCTCTCACTTTGGCACCCTGAGTCCCTGCCTAAG a score=1312 s hg19.chr6_ssto_hap7 4288834 25 + 4928567 gataatgttagacttttcaatgttt s canFam2.chr12 5462340 25 + 75515492 GATAATGTTAGGTATTTTTATGTTG a score=13707 s hg19.chr6_ssto_hap7 4288862 296 + 4928567 tatttagtgattttaaaatgttatttcaaggactgttctaattcacaattctctgataactattgtgagctta---acttttgtacgtttattggtcttttatatatccctttttgtgaactgccctttcacatcttttgatcattttcctatggggctattcttagatgttctggatattgatcctatgtaaattatgtgtgatataaataagtttagattgtggctttt-------tttcctttagagtgtgttttgattaaagtttctaattttaatgtggtcaaatttattcatcttctctt s canFam2.chr12 5462564 300 + 75515492 TACCTAGTGGTTTTTAAATGTGATTTCAAAAGCAGtt-taattcaccattctttgataactatggtaaatatgcatattttagtatatttattggtc----atctttcctctgatgtgaaatgcctattcacgtcttttaactatttttctctcggataattgttaaatattctggatat-aatcctatgtaaaatacgtgtgatgcaaataaatctagtctgtggcttttgggttttctttcttaaaaatatagtttgacaaaagtttctaattttaatgtggccagattcataaactttttctt a score=23784 s hg19.chr6_ssto_hap7 4289167 664 + 4928567 gtttttaaaatgtgtatgtgtgtctttttaataaatatttttctaccttgaagtcatacaaat-atttctttcacattttcatttaaaagttttacagttttgccttcaatacgtcggtacttagttcatctggaatttatt-------atgatgtatATATATCCACTAATCCAGTGTCATAAATTCAAACTTATTGAATTATACATCCTTTACCCACTGGTCTTTAATGACCATTC----TTCACATACAAGGGGTCCTGACACT-ctttccattctattctattggcccagttgtctactccctctctcaccaataatagcacatggtcttaaatccagtggtgtatataatatcttctcatgtagtcaggaaattccccaacttcctctttattttcaatggtattttggctcttcttgaacttgtgttccttcgtttcattttaatatcattgtgtccaa-ttctataaaacattttgttgaaatttttctagaaatagcat-gaaactatagatcacattggggaaaactggcattttaatgatattgatgcttcctaaccatgaatgtgtctctccatctgtgcagtacttcttcaacttcttttaatgattttaattttccccactaagatcttgcatgcctttcctttttgagaatttattcctgattac s canFam2.chr12 5466536 605 + 75515492 GTTTTTAAAA-ATTTGTATGTGTCGTATGTAATAATATTACCCCAC-TTAAAGTCATATAAGTTATTTCTTTTATATTT-CATCTGAAACTTTTAATGTTTT-TTAAAAATATTTTAGCACTTCGTTCATTTGGAGTTTATTTTTATGTATGATGAATGTATATCCAATTATTCCGG----------------TATTGAATAGTACATCTTTTACCTAATTATCTTTAATGCCCACTCACTCTTCACATCTAAGAAGCCCTGATGCCGTtttccattctattctattggtccatttgtctacataccctgccaccatcagtagtgcagggtcttaatgacagtg----------tatc---------agtc---------------------------ttcagtagtatcttgcctttccttaaccttgtactacttcatttcaatttaaaatcagtttgtctaaattccataaaataccctggagagattcctctagaaattatattgaaactatagaacatattggggaaaactaacatctttataatattgaggct-cttaaccatgattatg-------gtgtatacaggacctcatcactatctttcagtgtttttaattttccccattaggatcttgcatgtcttttctttctgagaatttattcctggtgac a score=30070 s hg19.chr6_ssto_hap7 4290561 741 + 4928567 tactgtaagtttgttatataaaccagttaatcacatttctacttttttgtttttatagaaaatgcaatagatttgtttatatatttagccaaccactgtgccaaactct-----taattcttatgttttagattatttt------tctctgtagacaattgtatcatctatgaataatgaaagtttgctttatttcattcctatccttccaacttttttt------------------------tTGGTCTGTTGTTAAAAGCCCCCCTATCCCATGCCTAAGTAATAAGTAATCTCAATATTACATTCCATCTCATATAATAAAATTTGACTTCCTAAAAGGGCTTGCTTCTTTTTAATTCAATGTCAATGCTGGAATTTCAGTTCTTAGCCTTGAAACCCTGGTGAAAAAATTCTCAGCAAGGTAAGAAGGAAAAAAATGTTCTCCCCTGCTCCTGAAGCTGGAGAGAACAATAAAT--------GAAAACTGTTGTCATAAATGGTTATTTCTAACA------ATTTTTCAAACCCCTAGACTTCAAATATTTTGGACAGGACCTGACAAAATGACCCTTAATCTGTAAAACATCTGTACTTTTGACCACTCATCTTTCTTAATAATTCAGTTCTCTGGTGATAATGTTTGAGCTTAAAATCTCTATCTTCA-GAAGGTAACGTGATTTGTGA----ATTTTCTGTCAAATCAGGAAAGAATCACTGGCATTGCCCTCTTCCCACACATGCATAGGATAAAATAGCTCTACTGGACTTTTTATTAA--------TCAAAG s canFam2.chr12 5467150 786 + 75515492 tactatgttactctcaaaagggacattttatcgcatttc--ctactttgtttaattgaaaaacgcagttgacttttttgtggatctctttaaccaccttgctaaactctattattaattcttatgtcttagattattttgtattttctctgtagacaatcatatcacctatgaataatgaaagctttctttcttcc-ttcttatgatcctaacttttcttcctttttACCTATTTTCCTTTCTTTTCAGCTGTTGTTAAAAGTCCCC-TATTCCCTGCCTAAGTAGCCC-TAAT----GTATCATTTTCCAT-TCATAGTATAAAATTTTACTCTCTGACAGGGTCTGCGT-TTTTTAACCCAATGCCAATAATGGAATTTCAGTTCTTAGCCTTGAAATGCCAGTAACAACATTCTCAGCAAGATAAAAAGCAAAAAATGTTTCTTTCTTTTCCCCAAAGCTGTGGAGAACAATGTATTTTTAACATAAAACT-TTCTTATAAATGA-TATTTCTAACAAGGATGATTTCTCAAACCCCTAGACTCCAAAGATTCGGAGTGAGACCTGATAAAACGA-CCTTAACCAATAAAATACCTGTAATTTTGATTACTCATCTTTTTTAACAATTCAGTGTTCTTGTAATAATG-TTGAG-TTAACATCTCCATCTAGAGGAAGGTAAAATTACTTGTGATTTTTTTTTCTGTCAAACCAGAAAAGAAACATTGGCATTTCCCTGTACTCACACA-GAATACAGCTGAATGGTTCTATTGGAATTTTTATTAAAGCAAATGTGAGAg a score=4007 s hg19.chr6_ssto_hap7 4291302 141 + 4928567 AGCCCGAGAGACAGCTGAATGGCTGAACCAAGCAGAGAGTGGAAACTTGGGGAGGGTAATTCCTTGCTGGGCCTTAAAAGGAGTCCACAAGATAGGAAAAAAA---------------------------------------------------------CGAAAAAGCCAAATAAGATGAACCTCTATTCAGGCCCC s canFam2.chr12 5468113 192 + 75515492 AATGTGAGAGACTGTTGAA----TAAAACAAGC--AGAGCAGAGATATAAGGAGGTTGATTGCATGCTGAGCCTAAAAATGAGCCCACAATTTAAAAAAAAAATCTAAAGatttttaattttattttatttatttatttttttttttaagatttttaattttaAAAAGCCAAATAAGATAAACCTGTATTTACGCTTC a score=11311 s hg19.chr6_ssto_hap7 4293169 798 + 4928567 CAGCGTTCCTCCCGCCTCCACGGCGCCGAGCCCTGATTGACGTTCAGCCAGGCCAATCATAGCCTGTGTCTGAGGCGCGCGGA--GCTGGAGCGCCCAGGGCATGTCCGCCGATCCCAAGGAGGCAATCTGTCAGGCGCC------GCCCGGG-------------CGGCAGTATGCCTGA---GGGGGTCCTCCGTGTTCGCGCCTCCCGCCG-----------------------------------CCTGCACTGAAAGGTCTGTACCTGAGCCTGGATACTTGAACAGAGGCAGACACTGCGGCTCAAAACCCCAAG------GGTAGGTGCCTATTGTGCGGAGTCTCGGAACGCCTGCCTGGAAGAAGAG--TTCCGGCGGCTCCCCGAACGCTTGGAGAAAGCGCTTG-GATGCAGTTGCAGGGTGAGATTTGAGACGGTGATTGTGTTTTCCAGCAGGCGCTCAGGCGGGGTGGTGAAGGAGGGATACAGACCTCTAAAGATTCCTCTCTCGTTGGGGTGAGGTGGGGAACAGCAGTGACAGTAGTTCTCATCCCTGAGCCTCCTCCGGGCCGGCCCGTGGAGGAGAGAGAAGGGGAGGGAGAAGGGTTTGCCCAGGCCTTCAGACACTTTACTTTGTGGGAGATGTATGTGCTGAGTGTCCCTGCTCTGGAGGGATTGTTAAAGAATCCAGGTTCTTGGGGAGTGTCTCAGGAGAACACTCCAGGTGATATCCTTATTCTTCCTATTTTCACCGTGTTGGTTTTTTTTTGGATAT--AACTTGTTCCCTTTAACCCGAGGTGGCCT-TGG-TGTCTGGCAGCTGTTTTCTCTGCCAGGCACCACCCTCTGGGCCTCACGTC s canFam2.chr12 5468315 726 + 75515492 CAACAGTTCCCCCGCCCCCACCGCGC-GACCTCTGATTGACGGCCAGCCGAGCCAATCACAGCCAGGGCCTCGGGTGGGCGGGCCGCGGAGGCGCTTCCGGGGGCCTCGCTGGTCCGGGGGCCTCGCTGGTCCGGGGGCCTCGCTGGTCCGGGGGCCTCGCTGGTCCGGGGGCCTCGCTGGTCCGGGGGCCTCGCTGGTCCGGGGGCCTCGCTGGTCCGGGGGCAGCAGCTTCTCCGCGGCGCGGCTGGCCCTCCCTGAAGTGCCCGCTCC-GGGTGTGGAGACCTGGACGGAAGCGGTCACTGCGGCTGGAAACCCGGGGCTCCGTGGCAGACCCCTACGGTGCAGGGTCCCTGAGCTCCTGCCGCGAGGAAGAGGCCCCCAGTGGTCCTGCAAATGCCTGAAGAACGCGCAGGTGACGCTGATGCAGGGGAGATTCCGGGGACGTAACGGTGTCCCCCAGGCAGCGCCCAG-CGCGGTAGTACGGAAGGGGTGCGCGCGTCCA--GGTTTCTC-CTGGTGGGAGTG-------------------------------TCCCAGTGC----TCCGGGC---------------------------------------------------------------TCGCGGGA-----------TCAGT---------------------TGAAGGAATCCGGGCCCCTGGGGAGGGTCCCTGGAGAATGCTGAGAGTCCTGCAGTTGTTCCTTCGGTTCTCGTCACGCTTGTTG------GGATATGTAACTCGTTCCCTTGAGCCTGAGGTGGCCTGTGGTTGTGCCACGGCCCTCTTCTCTCTCA--CACGACCTTCTGGGCCTCACGCC a score=6173 s hg19.chr6_ssto_hap7 4294743 239 + 4928567 TGTGAGCTGTTACCTCAGTCTTGA---TGAGGTTACTCAGGAAGTCTGGGATCTTGATTTTTGCCGGTCACTGATCACCT------GGCTACAGGA-AAGGAGACCTAAATCCAGAACTTAAA-TTTATGAACACCAGGTCTGTAGGCACTAG-ACCT--CAGAAGTAGGTGAGTAGGTGGCTATTGGTTGGTCCCTTCTGGAGTGAGGCAGAGATACCTATGCCATATGCAACATAAAAGGTTGCCTGAGCC s canFam2.chr18 44178350 243 + 58872314 TGTGACCCGCCGTCCCATCTCTGAGCATGAGGTCACCCTGAAGTGCTGGGCTCTGGGCTTCTACCCTGCGGAGATCACCTTGACCTGGCAGCGTGATGGGGAGGACCAGACCCAGGACACAGAGCTTGTGGAGACCAGGCCTGGAGGAGATGGGACCTTCCAGAAGTGGGCA--------GCTGTGG--TGGTGCCTTCTGGAGAGGAGCAGAGATACACATGCCATATTCTGCACAAGAGCCTGCCCAAGCC a score=28426 s hg19.chr6_ssto_hap7 4294982 924 + 4928567 CCTCAGCCTGAGGTAGAGT---AAGGAGGGAGAGGTGGAGAGGGAC-TTTCTTCTCAGACCAGGGAAATCAGAAGCCATCAGATGCCTTCAGTA-----GGGAATCCAGCACAAAGAGGATCATAAGTCATCTCC---------------CCACTTCTCTATAGTCATCATAGACGTAATTGCTAACCTACCCTTCCTTGGTGCTCTGGTTAGTAGAGTGAAGTTGAGATAATATAAATGAAAAAACTGAGCAGAAAGGGAGTGAGGATACGGGGCCTCTTCAGTTTGCCTTATGGGCTTCCCACTCTAAATAGATGAGGTACA---CAACATTCTGGCAGTATCACACTAGGGCCAGAGTTGGTAGCTCACAGATGTACGATAGAGGATGGA-AGGAGTATGCCTCTCAGGCAGGCAAGTTTAGCCTGGTAGACAGAGGATGTGGCTTAAAAGTCACTGCCTACAAGACCAGTGCATGCAAGTGAGTCCCTGCTGCTGCTTGGATCAGAGGAGGTGAGGCAGAAGGCTGATGAAAACCCACCAACTGATGGTCAGTCCGAGAAGCAGTCAAGATGGAGAACTGCAAAATTAACAGCTTAAGTTTTCCAGGAGTCTCAGTGCCCAATGTCAGG-TCTACCAGGGATGTCCAGCCCCTCTGGTCAGAGCCCCAGGAGCCTTGTCTGAATGTGGATCCCCTCTGCTTATTCAAAGAGACCTGGGAAGCTGAGCCAGGAACCTGGATAATGACCAGAAAGTCACCCAGACACCTGAGAAATGCCTCCCTTATATCCAAGAGATCCCTGTGTGTAGAACACATGAATCTATTGGAATATCACACACAGTGAGCAGACTCTTCTTACACTTACTAAACTCTCTTCGTAGATTTACTAAATTTTTCACCAGTGACTCAATGGAGCGAAACCAGGTCCCAGACTCGATTTAAAAAAAAAA s canFam2.chr12 5469045 836 + 75515492 CCTCAGCC-GAGCTGCGGTCCGGAGGAGGGCCAAGTGGGGAAGGAAATCCCCTCGCAGACCGGG--AACCGGGCACTGCAGGATGCCTCTAGCGTGACCAGGGTCCGGGCCTAGACAGAAGAGTAAACCACCTCCTCTTGCGTCTCAAAGCCGTCTTCCTACTGCTTCCATCATCCTGAATGCTGGCCTGCTGGCCCGCGGTGCTCTGGTTATTAGAGAGGAATTTGAATAATGTAGACGAAAAACTTGAGT-GAAACAGAGTGAGGATACCAGGCCTCTTCAGCTTGACTTGTGGGTTTCCCACACTAACTC--TGAGCTTAAGAGCAATACCCCGCCACTCTTAAGCTAGGG----------TGACCCACAGATGTGCTACAGAGGATGGATGGGAGTATGCC-CTCAGCAAGGCAAGTCC-GCCTGG--GGCCGAG--TGTGGCCAAGGAGCCTTGG--TTGGGGGCCATTACATGCAAATGAGTTCCTGCTGCT---TGCATCAGAGGAGGTGTGGCAAGAGCCTGGTGAAGGCTCATC--CTGATGCTCAGCCTGAGATGCAGTCAAGATGGAGAACTGCAAAGTCAGCAGTACACGTTTTCTGGGAGCCTCAACGTCCAATGACAGGCTCCACCAGGAATGAGCAGCCCCTGTGGGCTGAGCTCTGCACGCCTGGCCTGCATTCGGAT-------------------GGGCTGGGGAAGCTGAGCCAGGAGCTCGGAGAGTGACCGGAAGGGCACCCAGGCACCTGAGAAATGCTTCCTAGATGTC---------------------------------------------------------------------CGCTTCAAGAACTCTCTTCATGCATTTCCCAAAATTTTCGTCAGTGATCCAGTGGGAGAAAACCAGGTCCCAGACTTGATTAAAAAACAAAA a score=29194 s hg19.chr6_ssto_hap7 4300034 679 + 4928567 atggaggaaccttaaatgcatattgctaaggaaaagcca--atctgaaaggattacatattgtatgagtccaactatatggtaatctggaaaaggcaaaaccatggagacagtgaaaa------ggt---------agtggttaccagtggtccatgggaagggttgga--------tgaataggtggagcacagaggatttttaaggcagtgaaactattctgaatgatactgtaatggtggatacatgtcat---acctttgtcaaaaccaataaaatataacaaccaataaaactgcacaaagagtgaaccctaatgtaaactatggacttaataatgtatcaatattggctcaccaattttaacaaatgtaccacactaatgcaagatgttactaatagtggaaactggagggaag-agggcttgaggggacatacaggaactctctgtaattcctgttcagtttttctgtaactgttaaactg---tccaaaaaaagtctgttTTTAT---------AAATGGAGGCATGGTTTTATATGGACTAAAATACTATGATTGCCTTTTTATTTTACACATGGTGAAATTAGAGCAGG-ACATATTTTAAACTCAAAATTCACAAAA----TTAATTTATGAAAATGTTTACCCAGATCAAGAATATTAAAGAAACTTAGATTAATATT--GTTACCTTGAATTTATTTTACTGAGTAATCCTCTA s canFam2.chr12 5475359 687 + 75515492 atggaagaaccttaaatacatattgctaagtgaaagaagtcatctgaaaaggctacctattgt--gatcccaactatatgatattctgaaaaaagtaaaac--tggagacagtaaaaattagatggtcaaaagaccagtgatcaccaggggttcactgggaaagagggaagcagagttgaatagatggagctcagggtattttgggggcaatgaagctattctgtatgatactgaaatggtggatacatataattacacatttgtcaaaacccatagaatgta-----caatgctac------------------------agacttt--acttaataatgtgacaacattggctcatcaattgtaacaaatataccaaaccaatgcaagatgttactaacagaggaatttaggagaaggtagggagtgaccgaacatatgaaaactatcatatttttccacccaatttttctgtaaacctgaaactcctctccccagaaagtatatttttaagaaGAAAAAAAAAGAAGGCATGGTTTTATGTGGACAAAAACGCTATGACTGCACTTTTATTTTATACGTGATGAAATCAGAGAGGGGACATAATTTAAACTCAACATGCACAAAACAATTTACCATAAGAAAGTGTTTACCCAGGTCAGGAATATTAAATAAGCTTAGATTAAAATTAAGTTCTCTTGAATTTA-----CTGAGTAATCCTCTA a score=9374 s hg19.chr6_ssto_hap7 4300733 264 + 4928567 AATCTAGAAGGATTTTTAAAGTC--TTTATGACAATTAATTATTGGTCTACAGTCAAATTGCATATCC--------------------CCA----------------TTAACTAGAGTTATATTTTTCCATTTTCTGATCCAAAAA--CTTTAGGAACAGGAAATGTTT--ATTTTAGAAAAC------------------AAGAACACTTCTTAAGCATTTGCTGTTAA-------CAGTTATTTTCACATGTGCTTGTACTT----ATTTTACACTTGTCAGAACATAGTATTTACCTTTGAACCAAGGTTTTATAATAAGCAAGCACTTTTT s canFam2.chr12 5476188 329 + 75515492 ACTGCAAGGAGATTTTTAATGTCCTTTTATGACCACTAATTATTGGTCTACAGCCAAGTTGCATATCTGATCTTTATTTTATAACTTACCAAAGACACTGAGGATATTAAACTAGAGTTACATTTTCCCATTTT-TAATACAAAGAGTTTTTAGGAACAGAAAGTATTTCTATTTTaaaaaaagaaagaaagaaaaaacgaaagaCCATTGTTTGAGCATTCATTATTAAATAAGCATAGTTATTTTTATGTGAGTCTGTACTTTTTCATCTTGCTTTTGCCA-----TAGTATACCCGTTTGAACTAAGGTTTTATAATATGCATAGACTTTTT a score=27870 s hg19.chr6_ssto_hap7 4301004 601 + 4928567 GAAGTCACATTTTCCAAGTAGAAAAATCATTAAAA-ATTCAGTCCTCTGAAGGCTAATTTCTTTAAATCATTTAACCTAATTGTTTAAGGTATAGATTGGAATTTTTCTCAGCACTCTCTTGAAAACAG-GTGACAGTGGAACCCTGTTAGGTTCACAAATCCTAGACTTTGATTATATAGCCCAGGCTCAAATTTTTCTCGAATGTTACGAACATTCAAAGCATTAGGAGTCTTGGTTTCATTTCTTAATTTTTTTTCTTCTGGGTATATTTGAGACTC--ATCTTGGATTCAAATAAATTAATAATAGTCTCATGAAACCGATAAAAATGGGAGCTCCATTGAACATGAGAGACATTGATTCGTAGTTTCTAACATCCTCCAAATGAGGAGCCCATCCCTAATTTAGATGCTTCTTTCAAAGGAGGCTCCTTTCCTTCGTTATCCATAATATAGTCACACCAGTCCTGAAAAAACATGGAACAGACTCCAGATCTTTATATTTCATACTCTAAAGTCGTACAAGCCAATCTGCATTTCCTCTAGTGGAAACTGTATAGCTGGTCATCTTTCCAGGACCCTTTT-----ATCAAGAAACAATGCAGCTT s canFam2.chr12 5476915 588 + 75515492 GAAGGTAACCTTTCCAACTAGAAAA-TCATTAAAAGATTCCATCTTCTGAGCGCTGATTTCTCTAACTTATTTAACCTAATTGTGTAACTTGAAGATAGAAATTTTTCTCTACAGTCTCGTGAAAACAGAATGACAGTGGAAT----TTAAGTTCACAGATACTGTACTTTGACCTTAT--CTCAGCCTGGAATTTTTCTTAAATGTTAGGAACATTTAAAGCATTAGGAACCTTGG-TTAATTTCT---TTTCTTTTCCCCTACG--TATTTGAGACTCCTGTCTTGGATTCATGTGAGTTAATAGTGAT-TCTTGGAATCAATAAAAACAGGAGCTCCATTGAACATGACAGACAATGGTTTTTATTTTCTAATATTGTCCAGATGAGGACCTCAT-CCTAATTTAAGGACACCTTCCAAAGGAGGCTCCTTT-CTTTGACACCTACAGTGTAGCCATACCAATTCTCAAGACACAAGCAGCAGACTCCAAGTCTTTACATTTC-----CTAAAGACATACAAATTGATCTGCGTTTTCTCTGGTGGAAACTGGATACCTGGTCAACTTTTCAGGGCCTTGTTTTTAAGTCAAGAAAT-GTGCAGCCT a score=4210 s hg19.chr6_ssto_hap7 4301612 94 + 4928567 TGTGCTGCTTCTACACCAAAA-CAGCTGGAATGTATATAGTATGGTTCTGGATGCTCTTGTATACCTCACTCTTCATTTCTCACCTAACCCATGt s canFam2.chr12 5479157 88 + 75515492 TGTACAATTTCTGCACCAAAAACAGCTGGAGTGTGA-------GGTTCTAGATCCTCTTGGATACCTCACTTTCCACTTCACAATGGACCCATGT a score=1246 s hg19.chr6_ssto_hap7 4302032 20 + 4928567 TTTACACAGAAAGAAAAAAA s canFam2.chr12 5479246 20 + 75515492 TTTACACAGGAAGGGGGAAA a score=25053 s hg19.chr6_ssto_hap7 4302366 609 + 4928567 AACTCTATTTAAACAATAAAAGAATTATAATTATATTCTTGGGAAAATTAACAATTATCCAAAGTCCCTTTGCAAAGGGAAAAAAAATGCATGTATTGGAAAA--AATCTCAACCACAGGG-TTCCCTAAGCTTTGCAAACAACAAATAGCATCCACCTATCCATCCTC-AGAGAGCAACAGTTTTACTGTTATTTAGAAAAAGCAACTATTTCAGGCTGCAGGTTGTGCACATCAGCACTTCCCAGCTCTCT------ACTAATATGGGAAAACTGACTATCCCTGACTTCAGTTTTTGTGAAGCTAAATGCCTGACTAGAGTTTAAACTGAGGCTAATTGGAGATCATAAAATTTTACAGCTTGCTAGAGGTGGACCACGATTTTGATTGGAAACTTTCCACCAACCAATTCTAAAAGGTGTT-AATGGTGACTATTTTCTAAAACAAATCTGAAGAGTAACTAATATGATA---AGACCAGaaatatatttctctggcaagtccctata---aaaagaaagctaggtaattaaataatctctcaacaatattgttttaggaaacccaatagagagtttcacaggcctgtttcttatgggattgctcaatgtaggtaaatatta s canFam2.chr12 5479266 585 + 75515492 AAATCTATC-AAATAATGGAAGAA--ATAACTGGCTTCTTGGGAAGACTGAAAATTATCCAGCAACCTCTTTCCAAGGGGAAAATAATGCATATATTAGAAAAGAAAACACAATCATATGGCTTCCCAAAGCTTCTCAAACACCAGGCATCACCCACCTATGTGTCCTCCAGAGAGCAACAGGTGTACTGTAAATCAGGAAAAGCAACGATCTCAGGCTGCAAGTTCTGCACATTAATGGCTCCCATACTTCTTCCTATATCAATATGGGAAAACGGATTTTGCCAGACTTCAGTTCACA-GAAGCAAGACACCTCACTAGAGTCTATAATGAAGCTAATTT-AGATCACAAAAC-----------CTAGAGGTAGGTAACAATTTAGCTTG-AAATTTTCCAGCAACCAGCTCAGAAAGGTGTTGAAAAGTGGCTATCCTATAAAACAAATTCAAAGAATAATTGATATGATACCCAGACCAGAAA---ATTTCTC----AAGTTCCTATTTTTAAAAGTGAGC----------------CTCTCAACAATTCTGTTTTAGGAAGTCTAATAGGG-GTTTCACAGGTCTGTCTTTTATGGGATTGTTCAGTATAGGTAAATATTA a score=13924 s hg19.chr6_ssto_hap7 4302975 315 + 4928567 tcaaaccaaaaagtaattttgtaacagaaattctacagagCCCCAATACCTTACAGaatgatgagtacaacagtagaaacaaatagaagataacctagaaaaataaagcgaataact--taatggcgtgagttaggttaagaaaagcttcctggaaaaagacatctgaatagaattttagtagatatagctaggaattc-ccaagcaggtagaagaagggggacattccaggca-aaggaatcatgtgaatgcaaaggtagggagtcatgaaTCAATATGTTCGGTTTTTTTGTTGTTTTTGTTTTATAAAGAGCTATA s canFam2.chr12 5480433 287 + 75515492 TCAAACCAAAAGATAATTCTGTAACAAGAATTCTACAGAGAGCCAACCCATTATAGAAGGATAAGTACAGCAATAGAAAAAAATACAAAGTAACCCAGAAAAATAAAGTGACTAACTCTTACTGCTATGAAGCAGGTCAAGAAAAGTTTCCTGGGGAAGGA------------ATTTTGATAGATGTAACTTGGAATTTTCCAAGTAAGCTGTAGAAGGGGAACATTCCAGGCAGAAGAAACCACAAAAAAGTAAAGGCAGGCAATCATGAATCAGCATTTT--------------------TTTCATAGAGATCTATA a score=17519 s hg19.chr6_ssto_hap7 4303580 450 + 4928567 GCTATAATAAGATCAGCTTACTAGACAATACAGTGAAATGGGGGAAGCTAGAGAAGAGAGGTGGGCAGTGGC---------------CTCTTATGCTACGTAAGAGATTTGACATC---------ATAAAGTAAGTTGCCAGAGTTCTGAATGAGGGCATTAGAAATA---GTAATGAACAGGAAAGCATACACTTAAGAGCTGTCTGCTGTCTGGGAGGTGGAATTTACA-CTGAGTACTGAGTAATAGAAT----GAAGGGGTTGAGGGAAAGGTAAGAATCTAGGGTGAGTGTAAATCTTCTGGTTCAGGGGATAAACAACAGGAAGTcattgaaatctattggcctatcc-gcattttgaaa--ttatttttactcatgtaagattctgtaaca-ttata---tggtcattaggaaatatctgtttactgaattatggaggtattcgaaatgttcaaacatttcatgcaatatcaaaaactcaaa s canFam2.chr12 5480720 465 + 75515492 TCTATAATCAGATTA----ACTGGGGGAAAACGTGAAGTGGGGAGACACAG----GAGAGGTAGGTAGTAGCAAGATCCAGAAATGCCTTCTATACTGTGTTAGAGATTTGatatttattttaaaataagtaaaattaaCAAAGTTCTAAATGAGGACTTTAGAAATAATAGTAATGAAGCTGAGAGAATATACTTAAG--------GCTGTCTGGGAGGTGGAATTTACAATTAAGTATTGAGTAATAAAATAAGTGAAAGGGTCCATGGGGAGGTAAGAAT-----GTGAGTCTAAAGTTTCTGATTCAGGGGATAAATGACAGGAAATcattgaaatccattggcctatcttgcactttaaaaggttttttttgcccatacatgtttctgcaacaatcatgcattggccattagagaagagcaattcactgaattatgcgggtatttgaaatgtcagcacactttatacactatctt---tttaaa a score=43757 s hg19.chr6_ssto_hap7 4304323 1079 + 4928567 ttatattcattaatgttgctgctgat---atcagaaaaaattctaagtatcccacagtagcagatacaagcttttcaaaattccaacttctacttttaaaagcttaaattttagcactggcaacaaatacaactagttgttttccctaaagtgatagtatcact--gtttattttcaagaaaatgtctgccaaattcccaagtctgaataatcaattttctgtcactttttt---tttccaagtgaaaagatg-------gtgtttccatgaaagaaaagaaaaagtggctaattcagcttgcaactcaaacaagtgtttttccaaaagacaacta---tatttcagcatgcagtagaagtgttttatgggtacatcacattgtgtcacaaagaatttttttaaatgtgcttaagggttgagatttagtagaaa--ataatttttacaacttcatcaaggacattattttagtaaaactgttttttttttactacgaatgtgtggtggtgaagaatacaatgactactaataaaatttggtgccattgccttaattcgtgctaagacaccagtcattttacccaccattggataaaatccaccatttttgcaccatcagtgcaaatgttaacacagttaacacagttgttgaggataaaccaccagattcaaaaaag-tcatataacacttttaatgtttcagaacccctgttgcc-----cagaattcacataaaagaagatcatcaatggtcaattgatgctgatacctgatgaatgaaagcaaaacaggatgtatagcca--tctgtagatcagtccctttgtaaggctaaggtacaattctttagatgatatattaactcagtctttatgtttgcagttaaatctttaatttgacaagttattgcatcattggaaaatgccagcactatgcattcttgtggtgatttttcatccagcaggtattc----agcaatgtcaactgttcaagcctttattagtctctctgtgattgtgtgtgctcctctagccaatacaatatgatggcttatcctgtaagaagcttttaaagagtgtattacatctacatttcggttatttaattcctt s canFam2.chr12 5481185 1012 + 75515492 tcacattcattaatattgcctctgacttcatcagaaaagtttttaagtacgccacggtagcaggtacaagcttcccaaaattctaattttcactc--aaaagtttaaattttatcattggtagcagatataatgagctgtttttt-tgaagtgacagtctcactttgttcatattcaagaaaatgtctcccatatacccaagtctgaataaccaattttctgtcagttgtttgtttttccaaatgaaaaaaaaaaaaaatgtgttcc---------ataaaaaaagtagctaattcagcttgcaactcaaa-----gttttctctggagacaaccaccatattttagtatatagcagaagagcttgatgggtatttcttatttcatcacagaatatttcttaaaatgtactca-gagttgagatttaatagaagtgataattatttttccttcatcaagaacatt-ctctagtgaaactgacttttaaaaactgtgggtgtgtcataataaagaatataatgagtgctaaagcaatttgatgctcttatcttgattcatgccaaggcactggtagtattatccaccattg--------------ttcttacactgtcagtacacatatgaatacaggt------gttgc--aggaaaaaccatgagggtcaaaaaaggttgtacaacactgttaatgatttaccacccctgtgtctattgtcaagattcacataaaaaaaggtca---atgattagttagcaatgataccaaatgagtacaagccggacagcatgtctagacacatctatagatcggttcattt-----------------------------------------------atgtttgcagttaaatcattaacttgacaggttactctatcattggaaaatggtagtactatgctttcttatactgtcttttaatcaggcaggcatttgtgaaacaatg-caactgttcaaggctttattagtctctttactattatgtaagctcctctagccaatgtaatgt-------tatcctgtaagaggcttTTACAGAGTTTGAAACATCTACATTTAAAACATTTAAGTCCCT a score=41687 s hg19.chr6_ssto_hap7 4305402 1422 + 4928567 tttttaataaattctgaatgattggtcccaaaatgatactgcaactttgttggaaccatataagtgtttgaaaatgttttactgcacaagacacaatatgataaattattaacatctataaagctgaacaaaagatcactttcaacatatttttgttgtgtatagttgtgctcagtttctttggaatagatttctcctttttatgaggaatcagataacttgctgatatgtcaatgtcatccttttcagcatctctagacataggcaatctagacaccagaaaatgtgttttctcttctccctttttaaagccaaccatccaccctattcagataaaattttttaa-ttaaaaacatttttgaaaaatat------attattgcaaaacaacaaagtaaacataatttttgttatgtttctgtgtaaa---aggaaaaactttaggatttaaaa---atgatttcttggaagataatgagattacagagattataacaggtataactgaagatagctggtaagagcatggta----gaaaagaaat------aatttctgaaaac---tacatacttataccgtaaactcactacctttgaaaactctagaaaatacaatacacaggcacacaatctgttaggtatcagagaaatagtcatcactattcatcacatgccattgttgtctttggcgaacccttctgtacacttatgagagtgagagtaaaaaaaaggcaaataacatcttaattttatgaatatttttgaccttgttgaccctctaaaaggatccaagggatctctcccttccaacatccccaggaatcctctgatcacattttgagaactgttgGATAAGtcagttaatattgc-aggaacataggctatcaccatggggaataaatgaaaccagatctctacctcacaccattacaaaaataaattttaaatgaaataaaaggctaaatgtgaaaaggtaaaggtttaaagctttgggggggaaatgtagaataa-----ctttattatctcaaggtagATagcctaacaataccacgtgctgaagcagaaatgtgaagaaatgggaatttgcatagaatcttggtggaagggtta----gttttcccacttatttcaactacttatttcacatatgcagtgttgtacaaatttaaagag-acaagaatcctacagacaagcaattctat----gtttatatgccctagagacctgaagacattctcaaatacaaaaacaaagaagtatgcataaggatgttcattgcaggtttgcttataattggtggaaagtcaggggatgcccatcagtgcataaaaaagtaaataaaattgtgttgcctttctacaata--aattgtgcaaccattaaaataaactaaatgtccatatttcacaaggacaattctcacaacataatAACAAATGATATGCACTAACTTTA s canFam2.chr12 5482378 1179 + 75515492 CCTCTGATATATTTTTAA----------------------Gccatcct------------taagtccaagaaaatgtatta------------------------------------------------------------taaatatatttt-gttttat------------------tttagaataaaatattcaattcta---------aaataat--------------------------------------------------------------aaat------------------------------------------ttcatacaaaattttgaaaattaaaaatggttttggaaaatattttaatattgttgcaaaacaaga---tgaaattaattctc---atgtttatgtataggtgcaggaaaatctttgagatttaatagttatgatttcctggaagataatgacattacagag--tatagctgatgtaactgaaaagagctggttggagcaaggagtagtgagaacaaattgagttaattttttaaaaaatatatgtatttatatcctaaactcactaccttagaaaatccttgaaagtaca--------gtacacaatttattaactgttagaacaatgat--------gtcatcccatgcc---------tttgggaaacgctactgttcactcatgagagtgaaagtgaaaaa--gacaaaaaacatctttgtattataaatagttttaaccttgtggaccttataaaagaatctcaggaatctctcc---------tccccagagatcctctagccataatttgagaactactgCACAAGtcagttaatggtgctaagaaaattggctatgtccacaggaggcaaa---aatcagaagccaatttcacaccat-acaaaaataaatttcaaatgaattaaaggtctaaatgtgaataagtaaag--------ctgttggaagaaaatatagaagaatatctctttattatctcagtgtagATagtctgacaacagcaagtgctgatggagagatggggagaaattagaatttgcatacactcgtggtggaaaatttaagtagttttcctgcttatttcaaccacttatttcacatatgcaatactgaataaattttaagggtatgaatatcctatatcccaacaattgtacttcagtttatatgacccagagccttagaaaatctctcatctatgtgcacaaggaaatatgcataaggatgttcattgcagccttgtttatatttagt----agtcagaggatatccatcagtggctaaacaagtgaataaaattgtgttgtattcatacaatataaatttcacaaccattaaaataaactaaatgtacatatatcatgaagacaagtctcaaaatgtaatgAAGACTGATTTGCACTCATTTTA a score=28899 s hg19.chr6_ssto_hap7 4306824 685 + 4928567 AACTAGTAATTGCATCTGGTGAGGGAAAAGAAAGGTGGACCTGAAGTCAGGTGCAAACAGCACAACTGTATTTGAGTAGTGGTTGCATGACTGTTGTTCCATGTATTTTCTGTATGTTACAAATATTTACTATTAATTATAACAACATAAGATGTACTCTAACTCCTTCATGCTGCTAATTATAGAATATCTACTTTGTTGACTAAACCCTTTAGCatatata-----tatatatatatatatata----------tatatatatatatatataGCCTATT----TCTGTTAA-------TGGTTCTTTGGATAAATAACAGTTGACTTTGTTCCTCTGCTTGGTATTTTAAAAAACCTATTAGTTTACAAATCTCTTACTAATTTTAGTTTTAA--TATTTGTATTGTTAAGTATTTTAAACACACAGAAAGGCAAATAAACCCCCATTACCCAAACACCCAGCTTTATTAAATCTTAGTATTTTGTCCTATTTGTTTC-AATGGTTTTTTTAATAAATCAGTGACTACAATAAAATTGATACCTCTGAATCCttccattttcttttcactgcccccagatataacca-ccaatgtgaagtcagttttatcattgctatgcatgtttttaatatttttactaaatgtttatgaattcttaaacattatgaagcattatgttatagag-tttttaagttttataaaatattatcta s canFam2.chr12 5483745 700 + 75515492 AACCAGTAATTGCAT-TGAGGAGAGAAAAAAAAGGTAGCACTGAAGTCAGGTGGAAACAACACAACTGTGTTTGGGTAGTAGGTGCATTGGTATTGTTCCCCATATATTCTGTATTTG--AAGTGTTTAATGTTAATTATAACAACATAAAATGTACCCCAGGTCCTTTGTGCTGTCAATTACAGAGTATCTGCTTCTCTTATCAAACTTTTTATTCT-TATAATTGCTTTACAGGTAATAAAATAAGTTTTAAATTAATTCTGTCTAGTTGTAACATAATCAGGTTTGTTAATTATGTCTAGTTCTTTGGGC-AATAACAATTGACTTTGTTTCAGTGCTTAGTATTTTTTAAAATTCATTAGTTTGCTCATCTCTT--TGATTTTTATTTTAATGTACCTTAATCATGACCTATTTTAAACAT----AAAGATTAATGGATATCCATTGCCCAAGCACCCAACTTTATTAAATCTTAATATTGTGCC----TTGTTTCAAATCTATTTTTTAAGATGTTAATGTCTATAATATAGTTGATGTCTCTGGACCCTTCCATTTCTTTTTTTCCTTTGCCAGATATGACGACCCAGCATGAAGTCAATTTTATCATTACTATGCATG-TTTTAATACTTCCACTAAATATTTGTGAATCCTTAGACATTATAAAGTATTGTTTTATATAGAGTTTTAAGTTTTATAAATTGATATCTA a score=26581 s hg19.chr6_ssto_hap7 4307513 515 + 4928567 tgtTACTTTAAGAAAACCTGCAGTAACCCCTTCTGAAAAAGATTAATCACACGTAATTTGTTACATATTAAAATAActgctcctaaatagtgatgtggccttgggcaagctctttcaagtttctgtgagctccagcttttccttatctgtgtggtaaaagaatatgagactatgtctgcgctctctttcagATTATAAGTCTCTAT-AAATTATTCAACTCAAATGTCCCCATGGGTTTACTTAAAGGATAGTTTTGTCCACTTATGAACAACTGTGTTTCATCAAAATCAGAATTTACTGAATGTTCATTCATTTTAACTTTTTTAA---------GTGGTTTGTCACAGAATTCCTTTCAATGCTGAGATTTTCAAATAT-ATTGCAACCATCGAGAGGacattcttgaatattcactatgagcctgatgctatgcgaggtgccagagatacaagagggaacttgacaggtacagtctgtctcccacaaagcttatggctgagtT-------TTTAAAATATAATTCAAGC s canFam2.chr12 5485333 524 + 75515492 TGTTGTTTTATGAAAACCTGTAATAACTCCTTATGGAAAAGAATAATCACATATCATTTGCTATGTATTGGAATAActtcctctacatagtggtgtggtcttgcgcaagccttttctagtttgtctaagctctagcttt-ctttatctatg-----ataggatatgagactatatctgaggtgacttccaTAT-GTAAATCTGCATTGAACCATTCTACTCAGATA-CCCCATTGGTTTGCTTAAAGGATAATTTTGTCCA-TTATTAAAAGCGTTGTTTCACCAAAATAGTAATTTACTGAATATTCATTGGTTTTAACTTTATTAACTTTAGTAAATGGTTCATCACAGAGTTCCTTTAAATGCTAAGATTTTCGAGTATTATttcaaccattcggaagacatttttgaatatccaccatgaatctgatgctatttgagttgccagagatacaagaatgagcaagacagatgcagtctctttatcacaaagcttatagttgaatgCATCTTATTTAAAATATGATTCAAGC a score=9821 s hg19.chr6_ssto_hap7 4308028 285 + 4928567 TTTTCAGGAATACAGTCAATCCATAAAGCAATAGGGAGAAACATTTCCAATATCAAGAGGCACTGATGAA------TGAATGTGTGAATAACTAAATTTTGTAACTTTTTTT----GTAGACA-----------------------------TAAAAATAAGCAT---------------TCACTGTGTC--ATCCTTAAAT--------AAAATCATTGGCAGAGTGTAGCCTATAAATGTCTGGAAATACCTCACCAAAGGCTAGAAGACATTTTGCCAGAAGGAAGTAATGTTTACATTTCTATATTTTGTTTCTTTTTCCTCTAC-ATATGCATTTT---GTCCTATGT s canFam2.chr12 5486058 348 + 75515492 CTTTAAGGAACACAGCCAATCCATAAATCAATAAAGAGAAAAATTTCCAATATCATG--TCATTGACAAACAGAGATGAATGtatatatatttaaattttaaaacttttttttaaaGTAGACGGAGGTAGGGGGTTTGGGGGGGGTGGGGGGTGGGGATAAGCATAGTAAAATCCttaaattattttttttaatccttaaattaaaaaaaaaaatCATTGGCAAATTTTAGCCCATAGATGTCAGCAAAGACCCACCTGTGGGCAAGAAAACATTTTGCCAGA-GGATGTAGTGTTTAAATTT--GTCTTATGTTTCTTTCCCTTCTGTTATATTCATTTTTGTGTTCTCTGT a score=10837 s hg19.chr6_ssto_hap7 4308313 356 + 4928567 CTATG-TCTCCTTCTTAATAGGCTTTGACATGAACCCAAAGCAAATGTTTCCTATTATTTTATCTATTTATTGAATATACATTGTTTTCTGAATGCTATTCCTTTCATTTACCAGTTCTAGTAGTCTGGGTTTGCTCTTATTTCTCTTTACTCTAAAATGGTTTTTTTAATCTGTAACACAGAACTTAGTGCTTGGTTATATATAGGTAGGCATTGTTTTCTAAAAAcactggtttacaaaatggaatg----------------tgcacactacag-----ggaatgtgcaaatgatccttgaggat------------acaggaaggaagtgttaaagtttctatttattt----------------------------------------------------tggtaacttataaactttc---------------------tatttgttacagtgtgag s canFam2.chr12 5486592 454 + 75515492 CTATTCTCTGTATCTTAATAGCCTATAGCATGTACCCAAAGCAA-TGTTTCCTATTATTTCATCTATTTATTGAAAATATATCATTTTCTTAATTTCATTCAATTAATTTACTAGTTCTGGTAATCTAGGTTTGCTCTT----CTCTCTACTTTAAAGGACCTTTT---GTCTGTAATATAAAACCTAGTGCTTGATTGTATACAGGCACAAATTGTTTTCTGAAA-CATTggtttccaaaatggagtatgcacactacagtgaatgcacacaaaatccttcagagtatgaaaaggaaatattaggatttctatttatatatatttGGCAACTTTTAAGCTTTCTATTTGTGTATGTTATGGTATGTATAATCAAGTCATATTACTAGTACATACGGATAAGTTATGATAATTTATAAATAAACATATGGATATAAGTACCAAAATATTTTTTACTGAGAGAG a score=8639 s hg19.chr6_ssto_hap7 4308734 325 + 4928567 tcgataagtactcaactcttttttactg------------------------------------------------------------------agagggCTTTA--------------------------GGCTTTTTTTTTT----------------------------------------------------------------------------TTTAAGTTTCAA------------TACCACAGTTCAAATGTGTGTGTTGGTCTTATCTATGTAATTGTTTtgtgtgctctttcagggagtggtggtgtcttgtgtctcttactctgtccaaaggaccttgtatgtataaatgcgaataaatatttattgaaCTCCACTAATAAATGATTCCATTCTTCAGACCATCAAACTAAGGACTACGCTTTGAACATGCTTTGGAAACATTTTCATTAAAGCCAAAA-TGTCTCAGAAATGTTTAATTAAAAAATAAAATTg s canFam2.chr12 5487193 497 + 75515492 ctggttaatagccagcaccttcttactgtgccctgaaatggtgcaagggccgagagaattctgggaaggcgtctttcacaagaacactcattcaggagggctacatcctcatgacctaagcacctcccaagggcctcacttcttaatacaatcacatcaggcaaaaggatttcaaggtgtgaatttgggaagacacacacttatagaccatagGAAGGGCTTTATGCTTAAAAAACAATGTGAACACCATAGTGCAAATGTGTGTTTTG-TCTTGCCTACATAATCGGAGTGTGGGTTCTTCCAGCGAGTGATGGTGTCTT----CTCTTACCTTTTCCAAGGGACCTTGTGCATGTAAATGCTAATA----TTTATGGGACTCCATTGACATACAATTCAGTTCTTCAAACCATCAGTCTGAGGACCATCCTCTGAACATGCTTTGGAAGCATTTTCATTAAAGCTAAGGCTATCTTAGAAAATGTTAATTAAAAATTAAAACGA a score=18100 s hg19.chr6_ssto_hap7 4309366 460 + 4928567 GGAAGACAAAGATATTTTTCTTTGTACCAGTAGAAGGAAGATTTAATGAAAAATAAACTGCAATAGTAAATTTAGAAGTAATACTGAAAGA-------GCAACTGGGAAGTCTTAGATGAAGTTGTCACCAGCTTCTTCAAAGCAATGAAATATCCAGTTGTCCCATTTAATTCTCATTTGGTATAATTTTTCATTGATAAGAATAATTCATAAT-----TAACCAGCTTACATATGCTTCTTAAATTTTAGTGTACATAAGAATTGCTAAGAAGTAGGCTTaaatgcaaattctcaggctccagcccagggatcctaattcagcagttctagaggttattcagaaatctgcattttcatgaagtaccctggatgattctaatggatgttGTCTGTAACACAACTTTCAGATAAATGTCCTGTATAAGCATATTCTATCTTGCCA-TTAGCCATGAGAATTTGATTAAAGAAA s canFam2.chr12 5487844 447 + 75515492 GTATAACAAAGACATTTTCCTTTGTACCAGCAGAAAGAAGACTTAACGAAAAA----CTTCATTAGTAAAGGTAGAAGTCATACTGTAAGATAGCAGGGCACCTGGGAAG-----GATTTAAGCGGTGCCAGCAGCCTTAAATCAAAGAA-TGTCTGGTTG-CCCAATTAATTCACGTTTGGTGTAATTTTTTGTTGATAAGAATAACTCATAACGAACCCAACCAGCTTACCTTtgatttttacacctcggtgtacaaaggaatttctaggatatag-cttaggtgcaaattc--agtctcacccccagggattctgagtcagcaggtcagagggtc----------cagcattttcatcaagtaccccagaagactctaa-gctggttatcagagacgccacttcaagg-aAATGTCCTAGACAAGCGCATTCTTCCTTCTCAACCAGCCATGAGAATTTGATTaaaaaaa a score=45849 s hg19.chr6_ssto_hap7 4309826 1028 + 4928567 CAAATCTAAGAACCCAACTACTAGTCTATTACTCCAACCATTCCTTCTTGCCAACTGTGATCAGAAGTATGAAAAAAACAGCCCATGTTCTTCCTTAGAGGAAGACCATATC-CCAACTGTGAAATGGTCCAGACATCTTGGAACTGAATATGGATTGTGATCCTGATACCCCCAACCC--TCACTGCTC-TTCATATACCAGCTGAGCATTTCATAATATTTATTCGATAAACCTTTCCTTGGTCCTGAGCCTCCTTGCTTCCCGACCTACTCCATGTAGCCTGGCTACTCTTATTTCCATGAGGTGGGCTGTCTTCTGGCCCTCCCATCATCCCCAACAGATGTGAACATGAGGGACCTTGGAGCAGGGGTAGATACTCCAGTGCAAAAATAGTGGACACTCACCTCTTCTAAGACCTTTTATCAATCATTCTCTAAACACCTCTCAAACATGTCCTTCCCTTGTATTTCCTCTTTCAGTGGATTAAACCACTGTCCACTCAACTGTCTGAGTGAGAAGATTGGATTCAGTGAGTTTTCAGGTCCTACCAAGTCTATTTCAAAGTGTCATTTCAATGATTTT-ATTTCCTTTGCTTCTAA--ATAGTGGCATACATGGATATCAAGTACTGTAGTGGGTTCAAAATTGGAGAAATGGATTTTGAAGTCATCTTTTTGCAGGTACAAGAGAAGCCATATTGAGTCAGTCAGAGAAGAGAAGACAG--GAAAAGTAGAATAAAAT----------------------CTTTAGAATATTCAAAGCATTACACAAATGTAATGTTTTATTATTAACTGTGACTTCATTTTGGTTCCAATTCTGTCCAGAGAAATTTGAATGCTGGAGTTTTGGGAATTTTAAGGCTTTGAGCAAGGAACATTTTATGATCCTCTGCTTACCACTTGTTTATTTACAACAGAATTTCAGCAATGAAGAGAAAGTTATTTTTGTAGGAAAAAAAATCCTACAATGCTTACTTCATACAAATTAGTTGTGCC-TTGGGTTCAGATTAACATACACACTCAAAAGACTTGGTGGG s canFam2.chr12 5488421 1015 + 75515492 CAGATCTAAGAATTCATTTAGCAGTCTGTTACTCTCACCACCTCTTATTGCCAACTATGATCAGAAGCATGAAA----CAGTATTTGTTCTTCTTTCAGAGGTTATCACATTGCTGGCTGTGAGATGGTCCAGATCCCTCGGGACTGGGCATGGCCTATGATCCTGGCACCCCAAGGCCAATCGCTGTTCCTTCGTGTGTCAGCTGGGCATTTTATGATATTTACTTAATAAATCATTACTCAGTCCTGAGCCTCCTTTCCTTCTGACCCAATTCATGTGGTATGGTTGATC-------CATTAGGTAGCCCATCTTCTGGCTTTCCTGTT-TTCCCAATGGATGTGGACAAAGGAAATCCTGGAGCAGAGTGAGATGCCTCTCTGTGAAAATAGCAGACTCTC--CTCTCCTAAGATCTTTAATAAAACATGCCCCAAAAGCC-------------CTTCCCCTATATTTCCCCTTTCAGTGAATTAAACCACTCTCCAC-CTATTGTCCAAACCAGAAACCTAAGTCCAATCAGTTTTCAAGTCCCATCAAGTCTTTTGCTTTGAGTCATTTCATTGATTTTTATCTCCTTTGCTTCTAATTGTAATGGTATACATGAGTACTAAGTA-----GGAGGTTCAAAATTGGAGAGATGGGATTTGAATGAATGTTTTTGTATGTATAATAAAAGCCAT-----GATAGATAGAGGAGAGAAGATAGAGGGAAAGTAGGACAAAGTAAAAAAAATGTCCATGAAAGCACCTCGGAAAATTCAAAGCATTACACAAATGTAACATTTTATTATTAACCATGATTTCATTTTTGTTCCAATTCTGTCCAGAGAAATTTGGATGCTGTAA----AAGAATTTTAAGGCTTTGGTCAAAAAACACTCTATGGTCTTCTAATTACTACTTGTTTATTTATAATAACATTTCAACAACAAAGTAAAAGTTATTTT-ATAGAAAAAAAA--CCTGCAATGCCCACCCTGTATAACTCAGCTATGGTGTTGGGTTCAAATTAATATGCACACTCAAAAAGCCATATGAg a score=90214 s hg19.chr6_ssto_hap7 4310886 2276 + 4928567 Tagaggaatattggatatggaaacata-----gcttgtcagcctgacagcattagacat--cttcatcaggagtcttTATG-TATTCTAGATGCTGATTCTTAACCCTCTCATCTCATGGGAATATGCATGGTCATAGTAGACAAGACCACAGGAGTAGGGGAGAGGCACGGGGGAGCCATTCTAGGATGGAAGAATCTCTCACATGACAGGAACCACATCTTATACCAACCCATGAGTGAGGATTCCAAGAAAACAGGCATATTCGGATTCAAGAAACACACCATA-ACAGAGTCCAGGGCCTACATTTCCCAACAGGTTTTCATACGGGTCTGGTCATATAGGTCCACCAAGTCTAAATGCCTGCCCGCAGTCTGcccagcatagatgtagttcaccaaccaggggtcatttccacacttataaataaataaataaataaataaatgtgattttttaaaatacagctgacatttcacatttatccaaac--agtacatttcaaagaaacagtaagtataaggtaaactggagttcatcttcccatgggaaaaaaga-----gcttaaaactgttgttaaccctttgacctacCATCAAACATTGCTTACTCCCACTCAAGAGCTCATTCCAGTTAGGACACAACCTGGTGACAGCCCTTCCTGGTAGCAACTACTGAGCATTGCAAGGAGAAGAAATTGGGATGGGTGCCTATAAAGAGAAAAACTC--TCTTTTTAACCTTCAAATCTAAAGAA---AATCAATCCAACAAGCATTTGCTGCAAACCTAGTGCCAAGCACTGCCACATAGGAAGATGCATCTGCCATCTGTCAAGACAGACTGAGG-GAGGAATGGGGGTAGAGACCAATTAGAAAATAGGAAAAAACGAGACCAGCTGGGGACAGCTGCAGCAAAGCACCCTGAGGATACTAAACACCCTCAGTATTTAGCTAGGATGGCCTAAAAGAGCTAATCTGAAAGAATTCATAAATCATATGGATGCTTCTATTATAAATTAGAGGAAAGGCAGATTTA------TACATCATGAAGCCTATAAGGTAAATATTATCTAGTAGTATGAACATAGCTTCACCACACAGCCTCC-TAAAAATCTATGGATACTTTCCTGAAA--GTACCCCTGAAGGCATTCCTCCTGGATTCTGTGAAGTAAATTAGCCCTCAAGGTGTACCCAGCAAGGGCTCAATAGAGTGCACAATAAATGCTCAA-CACACATCTATCTTCCTCCCCTCCCACT--ATCCAAGCTTCATGCCTACCTCATGAATCTCCAAGT-TCCTTTCTCTCCTGTCCCTGGAGCATAGATGAATCAGAATCCCTGCTTGCCACCCCATTGGACACCTTGAAAAGAGACCCTTGGAATGGCTATGACGACACATCAGTCCTGGCTACGAGTGTAAGACCCTGGGCATCAGGAAGCCTCAGGCCATGAGCTATTGAATGTCGCTTGTCACTTTGCCCTTTGAGGACCAGAAATAAAGCTTCCAGTTCCTG-TGAAATGGCAAATAGGTAGGTTCAGGCTTCCAGCTCCCTCACCCAAAATTAATTTTTGTAAAGGTAGAGAAGCAAAAGGAAGCAAGGATCTGGGGAGCTGGCAACACCAG---AAATAAGTATAAAGTGTTTTTATATTTGCCAGGAGAGACAGAACTGCTGTCTTGAGCTGGTGTGCGTAGAGAATGGGCAGGGCTGCATCCTGGGAGATAAGCCACAGTGGGAGAACAGGCTGCAGGAAGACT--------------TTTTAATTTCTGCAC-TATGTCCTTCCCAATCGGCTTGGGACAATTGTTGCCTCCCCTTCATACATAAACAGGCTGCAACAGGCCAGGCTACTTGTATCTTCAAGGTAAATCAGTAGGGAACAGATGAAACTAGGGGTGAGCTTTTGGGTATTCTCTTCTCCACTACTCACGACCACTGCCCCAACTCCCAGCGCTGGTGAATCCCAACGTGGAGCACCTGCCTACTCCCAACTGTGCTTTTCCTAGGAGTTGCCTGAAAGAGTAGTGGCAAATGGGGAGATCCACAGTGTTTCTGGGCTCTCTACCAGGGCTGGATCTGGAGGGACACAGAC---CAGTATTTGA-CTTTATCTCTTCCCCATTACACATT-ACCCCACAGACTAGCTGGTGCCCTCCTGGAGACGTGAGCTCACAGATCAACATAATgatatggctaaggaacaaaaaaattgcaaaacatagacaacaaattaacaccatatactatctaatgcagaattgtgaagaagatgaaccaagaacttgaaacaaaatggcaaatatactta s canFam2.chr12 5489637 2193 + 75515492 TAGAAGGGTATAGGACATAAAACAACATTCTTGTTTATCAGCCTGATAGCATTAAACATGTCTTC-TCAGGAGTCTTTACAATAATCTAGGTATTGATTATTGTCCC---CATTTTGTGTGGACATGCTTGGCTGTAACAGACAAAACCACAGGGGTGGATA-----------GGACCCATCCCAGGATAGAAAATCCTCACAAATTACAGGAACCACATCGTATA--AGCCTGTGAATTCACATTC-AAGCCAGCAAGCACATTCAGTTTCAAGAAACAC--CATACACAGAATCCAAGGTCTGTGTTTCCTGACAGGTTTTTATACTTTTTTTGTCACATAAGCCCACAAATTT--AATGCCTACTC--CATCTTCCTCATGCAGATATAGTTCACCAAA-AGGGGTCATTTCTACATTTAAAA----------------------GTGTTGCTTTGTAACACAATTGACATTCCTTGTTTATCTAAACCCAAGACATTCCAAAGAAACAGTAAAGATAAGATAAACTCGAGTTCATCTTCCTGTGGGAGAAAAAAAACTGGTCTAATATTGCTATTAACCCTTGGGCCCCCCAACAAACCTGGTTTGTTCCCCCTCAAAAGCTTATTCCAGTGAAGGCAC----------------TTCCTGGTAGCAGCTCCTGAGCAA-GCAGGGGGAAGAAAT-GAAATGGGTGCCCAAACAGGGAAAAACCTATCTTTTTTAACCTTCAGATACAAAGAACACAATGAATTCAACATGTATTTGATGTAGATCTTGTGCCAAACATTGCCACAGAGGAAGATTCATCTGC-ATC---CAAGATAAACTGAGGAGAAGAATGGGAGCAGAGGCCAATGGGAAGATAGGAAGCCACAGGACCAGCTAGAGATGGCTGCAGCAAATTGCTTGGAGGGCTCTGA----------TATGT-GCTAGGGAGACTTAAAAGAGCTAAGTTGAAAGAATTCATAAATTCTACAGACGCTTCTA-----AGTTACAGAAAAGGAAGACACAGCCAAATACATCTTAAAGACCACGAGGCTAATACCATCTATCAGGGTGC-TGTCGCCTCATCATACAGCTTCCCTCAAAACTAACCAGTATCTTCCTAGAAAGGAATTGCTGAAAGTCTTTGTCCTGAATTCTGCAAAGTAAAACATCCCTGAAGATGCACCCAGAAAGGGCTCAATGGAGTACACAGTCAGTGCTCAAACACAAATATATCT-----CTCTCCTACTTGATGCCACACACACTCTTACCTCATGAATCTCCACATCTCCTTTCTCTCCTGCCACTGGAGCAGAGACAAATCAGAATTCCCACTCACCAGCCCATCTGGCACCAGGAAGAGAGATTCTTGGCACAGGCATGACAGCACACAAGTCCTGGCCACAGGTGTAAGACTCTGGTGATCAGGAAGCTTCTGACTGCCAGCCATTGGACGTCACCTGTCA-------CTTTGAGAGCCAGAAATGAAACTTCTATTTCCTACTGAGATGGCAAATAAATAGGCTCAGGCT-----CTCCCTCACCCAAAATTAATTTTGCTAAAGCTATAGAAGCAAAGGGAAGCAAGCATTTGGAGAACCAGAAACAATGGCCACAACAAATATAAAATGTTTAGA-ACTTGCCAAGAAAGAGAGAACTGCCATCTTGAAACTGTGCGTGTAGGGAGTGGGGAGGGCTGCATTCAGGGATAGAAACAGCATTAGGAGGACAGACTGCAGGAAGATCTAAATTTTAGAATATTTTAAATTCAACTCTTATCTCCTTCATAATTGTCTTGAGAC-ATCACTGCCTCCCCTTTACACATAAACAG---AAATTAGAGCAG--CACCTGTGCCTT---GCTAAGTC---AAGGAACTAAAGAAAATAGGTGTTAGC-CTGGGGTATTCACTTCTTCATTATTTGCTACCATGGCCCCAGCTCCCA---------------------GAGAGCCTGCCTGTTCCCAGTTGTGCGATCCCTTAGAACTGACTAGTAGAGCGTCTGCAACCATGGAGAGT--CAGTGTTTCTGAGTTCTCTGCCAGGACTGGATCTGGAAGGACACAGACCTTCATGGTCAGACCTTCATCCTTTCCCCACTATACATCGACCATACAAACTAGCTGTTATCCCCATGGAGACATAAGCTCAGAGACCAACAGAATTAGACCGCTAAGGACTAAACCCGCTATAAAACAGAAATA--AATCAAACACCATATACTGCCTAATGCAGAAGTGAGAAAAAGATGAAACAAGAACTTAAAATTAGATGGTAAATACACCAg a score=1085 s hg19.chr6_ssto_hap7 4313190 29 + 4928567 gcaaaaccagtaa-ctcacaaaaacaaaga s canFam2.chr12 5492390 30 + 75515492 GtaaaataaataattttaaaaaaataaaGA a score=2513 s hg19.chr6_ssto_hap7 4314244 100 + 4928567 TAAATGAATGTG-------TGTGTGTGTAATATCTACTT---GGTAGGAGAA----TTGGCATTAGAGGGAGGGAAGTAGAAAATCAAAAGAACATAAGAGTATGCTAAAGAAC s canFam2.chr12 5493174 113 + 75515492 taaatatatgtgatctttatttgtcaatcatatctccataaagctggaagaaAATTTTAAAAATAAATGCATTAAAAGAGAAAATCAGAAGGACATA-GAGTATGCTAAAGAAT a score=12870 s hg19.chr6_ssto_hap7 4314344 294 + 4928567 TTAGGAGGCAAGATATAAATATTAAGGTAGTTAAGACATTTTAAAAGGTAAATGCTCAC-------TGTGTTAAATTAAAGGCAACCACCATAAGAACAGAATCAGTATGTATAACTTTTAATACAGCAG-AAAAAAATCAGTCTATCAAATGGAAAGCAAGAAAAGGGAAGAAACATTGTACAATAAAAACAGAATGTGAAATGAGTTGCAAAAGTAAATCTT--TACTTCAGCAGTTACCAATAAAAGAACAAAGGCTCTAATAATGGAGGAAAAAGGGAACCAAATCATGTGTGATTTATA s canFam2.chr12 5493484 298 + 75515492 TTTGGGGTCAATACATAAATATTAAGATATTTAAGAAATTTATAAAGGCAAGTAAACAtgaatatatgtcttaaattaaagccaaccatcataagaactgaatcagtaaatgtaacttccaatctagcaggaaaaaaatcagtctatcaaatggaaagtgagaaaaagaaggaaacaatatacattaaatacaaactctgaaatgagttataaaaataagtctcaatatatcagcagttataag---aagaataaactatatatatatttaaaaaaaag---aacaaactacgagtcatttaaa a score=7509 s hg19.chr6_ssto_hap7 4317162 124 + 4928567 CAAATCCTCTTAAAGCAGAAAGATATGTAAAGATTGAAATTTAAAAACAGGGAAAAAAGATTTACCTGGTGGCAAATATGACACAAAAGAAAGTTGGGCAACAGTCTCAATATGTAACAAAATA s canFam2.chr12 5493782 119 + 75515492 taaatgcacttaaagtgggaagatatgtaaaggttgaaatt----aacaggaggaaaagatttaccaggtggcaaatatgacctcaaa-aaagttgggcaacaatctcaatacacaacaaaata a score=99275 s hg19.chr6_ssto_hap7 4318269 2587 + 4928567 ATAAAGGACAAAAGAAAAGATGTTCATATAACTTTTAAAGAAAcaagaagatatagtaatcataaatatatataaactcaacaatacagcctcacaatttataaagcaacaagtgaaagaactacagttagaagttgagttttttaaaaatacatttgatgatttttacaaaccctctctcaaaaactggtagataaactagaccaaaaagaaaaaaaaaaaaaaagcagagttcttgaaGGGCAAAATAATAAAATTATATAAGTTCAAGCTAATTAATAAAACCTGAATAAATaagaaactgatagactctctcacattaaaaatgaccaaagagacatgaaaacttactgaaatgcttgattctggattgcaggacaagagact--gggagtggctggagttataaggttctttattgggaaaactggtaaaatttgaatatgtactgtggattagc-taatattatatccaagttaaattttcttaatatgactgtttttctgtgtttatgtaagagaacagccttgttcttag---gaaatacattgaaatatttagcaggaaaggggcatgtgtgtatgtaactCCAGACTTCCTAACCATTTTAGAGTAAACCATTTTTTCTCTCTAATGTTTTTTCATAACCATTTTAGAGTAAGTCCCTAAAATGGACTTAGGAATATTAATGTTTTTTAGGAAAAAAACAGAGAGGGAAGCAGAGacagagagaaaaagaaagcaaatatgacaaaatgttgcaaatcattgaatttggacaa-gtgtacgtaagaattcttt-gtactactcttctaa----------------aattacttcaaaataaaaaGTTTTTAAATGTCACaagtaacctgtgagttaaaagaaaaat-ataaagaatatg-----tagaattaaataaaaattaaaacactgcatatcaaaatgtgttagatatgattaaagcagaacttagaaggaaattttttacctttaaatacacttactaggaaacacaaaaaaagaccaaaatc----------aataagctgagtgttcaactcaaacgctaggtaaagaggaacagaatacacccaaag----gaggaaggaaatagtaaagatagtcata-----aatgaaatagagaactaaaaacaataaaatagatgaacaaaaacaaaagctgccctttgaaaagaCATTTCTATTTAT---------------------------------------------------------------------------------------------TAttccaggaaacagaatgaagaacaaaatctgcctaggttattgtttagagaaatttttattacaaaaacaaacaaggaaatacaagaaaggcaagttttacgtccatgcttt-ataaaagtaaatacaacaacccaagtaaaatattaactaaataacaccaacagtaaatgtgtaactataggatgaacaaatagggtttatcccaggaatgcaaagat--gtttcacattttaaaaa---tctctcaatataattcactatattaggagattaagaaggaaa-----atacaatgaaatgagtcaattctgataaactattttttaaatgtaaaaaaccatttatg-----tttaaaaaataaacttttagaaaaccaggaataaaaggaa--accta--ctaatttagtaaagGTTG-------------ACAGCAAAGActtctggaaaaattgagtagacatactttttcctattcatctcactaagtacaactaaaaactctggacattatatatatataaaacaaacataagaagactctaaaaggtggaaatgagaaggcagaacagctagaatctcaggatctg-aggaatgacatactagtgagttccctgggctttctttttgccacatatatgctgggcttggagctgaagaaagtgacaatttggaaagaccaactggcacaaa-caaacaaacaaacag---aaaaagcc--------------------ccaacaacacttac-aaca------------------aaagccctgatatcactagccaaaagaccaagacagaggcaggcaagcctgtcaagcc---------ttagaaagtaa-ctgttcagttctaggcaaataccatagcaataactgtgactctactgccattcacaccagaaagaccaagtgggagacctaaactttcaccctcttgaagctgtaacaaggtgctccaacatcactctgcagtggtatccaagaagaccaattaggaagctaagaatttcatttctgcaagccagtaatggggccccctctctaagatgtcaatggagatgggggcggggggagaac------acctgcccagaaataatgaaaatggctaaaagaagttatctaaacagaatggaaatgataaaataggaaccttggaacatcaaggaagaagatagaacaaggtaagcaaa-tagatgggtaaatacaataaatttttcttctcctcttaagttttctaaagtatgtttgatggttgaagccaaaattataaca--ctgatgtggttctaaatgtatgtagaggaaacatttaagacaatcgtattttcagtgaggaggataaagggatgggacataaattaggaaggtaagatttttattatttactcaaaatggtaaatgatgactccagcagactgtgacaagttacatgtata-tgtaatacttaaagcaaccacttaaaa--gttatgca--tcaatacactcaaaa s canFam2.chr12 5493929 2609 + 75515492 ataaaggaccaaa-aaaagattcttatataa-ttaaaaagaaacaagga---acagtaatcataaatgtatataaaataaaaaatacagcctc-caatttatatagcaataactgaaagaactacaagcagaa-ttgatttttttaattgca---gtggtaattttaacaaaccc-atgtcaaaaacggatatataga---------------------aaaataagcaaatatcttaaagaccagaacaatacaagtaTTTAAGCTCAG--TTATTAATCAAGCCTTAACAAATAAGAAAATga---attcttccagattacaaatgactaaagtaacaaaacaagtggctggaatg----attctggattgcagggcaggaagcaaagggagcag-ggaaactatgaggatctttactgagaaagttactgaaatttgaatatgtattgtggctgagaatcgtattatatcaaagtttaatttccagggtgttaccattctcctctatttatacaaaagaatgtccttgctaagagcaagaaacacactgaaatacttaacaggagaggggtttg-atgtctgctactctgaaat----aa-----ttagaacaaaacatt------------------------------------------------------------------------------------------agagaaacagaaacagaaa--aaaagacagcaaacatagaaaaatattaaaaattactgaatctagacaaagtgt-cataggaatttttttgtactattcttataatttttcgtaaatttgaaatcactgcaaaattaaaaGTTTTAAATTTTCATAAACAGCGTTTGAATTAAAACCAaaattataaagaacataataattagaactgaccagaaattaaaacactagctatcaaaatttgttagatacaattaaggcagaacttaaaggaaaactttttacctgtaaatatacttttcaggaaacaaacaaacaaa--aaaacctacgtaataaaattacctaagcattcaattcaaaatttaggtaaagaggaatagaacaaacccaaagaaaggaggaaggaaataataacgttaagaatagagataacaaaattgagagctaaaggcaat---------taatggaaacagaagcttgcctttgaatatatatatatatatatatatatatatatacacacatatgaaaagatacatatatctttatatatacatatatatatatatatgttgtatgtgtgtgtatatatatatGTTGTTCTGGAAAAGAGAATGAAAAACAAAAGCTGCCCAA-CTATTGTATAAAGGAATTTTTattacaagaataaataaggaaatacaagaaa----------atgtccatgcttttataaaagtaaacacaacaccctaagtaagatattaactaaacaaaaccaacagtaaatacataactataggataatcaaatagggtttattataggaatgcaaagataagtttcacataaaaaaaaatctctctcagtgtaatcc-ccatattaggatattaagagagaaatgtatgtataatgtaacaaatcaatgatgaaaaatgattttttaaatttcataatctacttatgatttttttataaaataaactcttagacaactaggaataaaaaaaattatttaacttaatttagtaaaggttgtacataaaaacctacagTGAGGATttctgggaagatggagtagacctatttctccctattcctctcactaagtacaactaaaaaccctggacattatatata----acacaaacataagaagactctgaaaggtagagataagaaggcagaccatatggga-cacaggacctggaggaacgacacaatggtgagcaatttgggctttcttttt-cctgatacatcccaaacttggagctgaagaaactaacaacttggaaaggccaactggcataaaacaaagaaacaaaaagtcccaaaagcctgatatgactagcccaaaggctgatatcactagccaacagtctaattatcactagtcaaacatctgatatcactagccaaa-gaccaggacagaggcaa-----cctatcaagaccagaaacttttacaaaataaactgctctgttccaggcaaacaccgtagaaataactatggccccattcctattcacaccagaaaggcagaatgggatacctaggcttccacccttctaagactataacagggcac-caaacatcaccctgcagtagtatccaaaaaaatcagtt-ggacaccaagaatt-catttcttcagaccagtaatgagggactctccccaatacgttagaggaatggactgtaggaggagaactcttacccctgtccaacaatgatgagaatggccaaa----gttctccaaacacaatgaaaattataaaagaggaatcttgaaacattgagaaacaaga----acaagataagcaaaatatatgggtaaatacaataaat----cttctcctcttgagttttctaagttacattagatg----aagcaaaaattataacagtctgatatggttctaaatgtgtgtacaggaaatatttaagacaattatactacatatgagggagg---------------------agagaggtaaggcttctacactccactcaaactggtaaatgatgacacgagtagacaacagctaat-gtatgcataatgtaatacctagagcagccactaaaaaatgttatacaaagagatacgctcaaaa a score=19319 s hg19.chr6_ssto_hap7 4320857 531 + 4928567 cactgtagataaataaaactggcgttctaaaaaatgcccaagtaagccacagaaagtcagaaaagagtaaacagagatgaaaactggagagaacaaacaaaataaatgaaaaac----------aattaagccct-TCATGTTACTACAGGTTGGAttgtgtcccacagaatcccatgttgaagccctaaccaccaatgggactatatttggagatagggccttttacagaagtaattcaggttaaatgaattcataagggtagggccatgattcaataggattaattca---ataggaagagaaaccagggtatgctctcttgctctttctccctcccagccttcctctctctttctctctcactctgcccccagaagatggcaactctctctataagccaggaagag----cccttaccagaagctgaccatgctggcgccttgatctcagacttccaacctccagaactgtgagagaatatatttctgttgtttaagccacctagttt----tattttgttatggcaccccaagc----TAATACATATATCAa s canFam2.chr12 5496732 519 + 75515492 cactgtagataaataaaaatggaattataaag--tgttcaaataagccacagaaaagcagaaaaaaataaacagaaatgaca--cagagagaataagtagaa--aacaaaaaattaagtggcagaattaagccctagcatattgctatgaattgaattatgtccc-taaagtcatacaccgaagccctaacccccaatg------tatttggagatagggccttt-gtggaaataatt-agggcaaatgagtttgta-gagtagagccctgatctcataagattagtgcccttataagaagaaatatcaggcagcttattcttgttctctctccc----------actctccctcttgcatatgaaataaaaccagaaggcagcca-----tatgcaagccaggaagagagaacgcttacca-------atcatgctagcactctaatctcagacttccagactccagaaatataagaaaataaatttcttttgtttaagccaccgagtctagagtattttgttatggcagcccaagtaaatgaatatacatatcaa a score=2115 s hg19.chr6_ssto_hap7 4321563 39 + 4928567 ATTACACTAAATGCAAATGATCTAAATACCTCAATTAAG s canFam2.chr12 5497253 39 + 75515492 attatattaaatgcaaatggtgtaaaattgtcaattaaa a score=1620 s hg19.chr6_ssto_hap7 4321653 68 + 4928567 TACaaaaaaaaacaaacaaaaaacaa--aaacaaaaacaaaaaaaaaCCCAGTTCAAATATAACAATATA s canFam2.chr12 5497317 66 + 75515492 taaaaagtgagccaaagataaaatatctaaaaaacaacaacaaaaaacccaactcagtt----caattca a score=10541 s hg19.chr6_ssto_hap7 4322045 285 + 4928567 aacataggcaggttaaaagtaaaaggatggaaaaagacacaacatgttttccttaattagaggaatacaggagtgagtgtactactctcagataaggtaaacttcagagccaaaacaaaaaaaattaccagagaaagataaggacgttttataataatagaagggtcagtctatcaagaagacattgcagtcagaaatgtttatgcccaaaacacca---gagctgtaaaatatgtgaagcaaaaactgacggaactgaaagaaaaaatagaaaatccacaattataa s canFam2.chr12 5497383 254 + 75515492 aatatatgcaagttaaaagtaaaaggatagaaaaa-atatattattcaatcattaatcaaagggaaaca--agtgagcatactacttccagataaaataaactctagatg------aaagaaaattaaccaagaccgtttgggacattttatgataa---aagggtcaacctaccaagaagacaaaataatcctaaatgcttacacgtaaaaaactgtgcaagctgtaaaatatgtgaagcaaaaac----------------------ataaaaTCCACAGTTATAg a score=1301 s hg19.chr6_ssto_hap7 4325555 55 + 4928567 GTACAcaaattaat-aattcaaactctcatctcaagagcccagaaaaagaagatca s canFam2.chr12 5498895 56 + 75515492 attcaaaaatcaatcaatgcattctatcatattatcaggctaaagaagaaaaatta a score=13704 s hg19.chr6_ssto_hap7 4325962 498 + 4928567 tacactgacaaagaagaaagaaagaatatagaaatgtccacagggaatatcc----------ctacacac-----------cctg-cagacatcggaaaaacataa---------------------------ATGGTGCTGGAA--------CAATTGAACATTCAAGGGCCATAGGAGGAGAGAAAGACAACAAGGAGGAAAAGAAGGAGGAGCAGCAGTTTAatctaagactcataccttctgcaaaaattgactcaatatggattacaaacttctatgcaaaatgtaaaactataaaacttttagaataagataggggaaaatcttctgaatctagatctgggcaacaagttcttagatttgacaccaaaaacatgatctgtaaaatgaaaaaatggatatattagacctgattaaaactaaaaactgttgctctgtgaaagacttgtaaag-gaatgaaaaggcaagctacataatggaagaaaatatttgcaaatcatgtatccaacaaaggactagtatctagaatatataacaacttatcaaaactca s canFam2.chr12 5499064 506 + 75515492 tgttttttcaaaaaagagaaaaaaaaatgaaaaaggcctacagctaacattatacttaatagcaaaatactgaatgtttttcctgtcagacagggacaaggcaagatatccactctcaccactcttatttaagatggtgttagaagttctagccagtaaataatgcaaga---aaagaaaaatgtaatcacattggagaaggagaaCAGAAGCGGCAGCAGCTCaacctaaga------------------------------tggattatggactt-------aaatgtaaa-cgataattttttttaaata------ggggaaatcttcaggatgtagagctaggcaaaaaattcttagagttgacaacaaaagcatgattaataaa-cagaaatattaataaactgcacctcatcaaaattagaaacatttgctctgtgaaaaacctataaagaggatgaaaagacaagctacatgatggaaggaaatatttgcaaaccatgtgtccaaaacagaatcagtatctagaatatacaacaaattg--aaaattca a score=8603 s hg19.chr6_ssto_hap7 4326726 184 + 4928567 acagtttgaaaaaaat----taattagaaaatgggaaaaattcatgaagagacatttcattaaa-aggatatacagatggcaaataagcacatgaaaagatgttcgatatcattagccattaaggaaacgcaaattaaaaccacaat---------------------aagatctcactacacacatattagaatggctgaaataaaaaa s canFam2.chr12 5499570 204 + 75515492 acaggaaaaagcaaacactctaattagaaaataggaagaa---atgaagagacatttcacagagtaggatacacacatggcaagtaagcacatgaaacaatgttcaa---caatagccattaaggaaatgcaaattagaattgcatttgagatattgaaattgaaattgagatatcaccacacacctgttaaaatggctaaaataaaaaa a score=32878 s hg19.chr6_ssto_hap7 4327219 702 + 4928567 tagtgacaataccaaatgcctgtgaggatgcagtaaaac--aatcactcgcacattgctggtgcaaccactctggaaaacactttgacagtttatttaaaaaactaaaaatgcaaccaccatacaattcagcaggtacactcctgggcatttgctccagagacattaagacttatgtccacacaaaaacttata-----------------------ttcatatcagccaaat-ctggaaacaacccagatgtgatggacagatggctaaactaactgtgctatacccataccatataatacaactaggcaataataaattattgatatatgcaacaaccttgtatgatctccagagaaatacattgagagaaaaaaaagtcaatcccaaaagtgtatatactatatgtttccatttattaatcatttgttttaaaatgacaaaaaaaaatttgtcttgaagtgacaaagtcatagaaatggataagagattagtgattgctagacattaaggagggtatgggatggtagggaagtgggtgtgtctagaaaagggcaaggtgaagaatccttgtgatcatagaagtgttctgtattgtggctgtatccatgtatcctaattgtgatattgtaccatagttttgcaaaatgttaccatcaagggaaactgggtaaaggatacacaggat-tgttttta----ttatttcttaccactgcatgtgaatctacaat s canFam2.chr12 5499775 682 + 75515492 cagtggcaataccaaatgctggcaaggatgtggaaaaactggattgctcatacattgctggtatagccacttgggaaaacactttcgtagtttctttaaaca--------ttcaactcctgaatgattcagcaattacaccactgggcatttatcttagaggaatgaagacttatgtctacacgaaaacctatacataaatgtttagagcagatttattcatattatctaaatactggaaacaatccaaatatcct-----------tcaaccaactgtgttatatccataccctggaatacaattcagaaataagaaactgt--atatttgcaacaaccttgtataatctgtagagaaatatgttgagagaaaaaaaa-ccaatcccaaaatgttatatactgtatgttttcatttataaaacattt---ttaaaatgacaaaa--------------------------tacagaaatagagaacagattagcaactgccagaggttaaggaagttgtggggcaatagggaagtgggtgtggctctaaaagagcaatatgagggatccttgtgatgatagaaatgttctgtattttaactgtatcggtgtatcccaattgctatattgtaccaatgctttacaagatgtcatcatcagaggaaactgggtaaaagatacatgggatctgtttgtacatttttttttttacaactgtgtgtgaatctatagt a score=3918 s hg19.chr6_ssto_hap7 4327921 66 + 4928567 atacagcaaaatttatacttaatggagaatatttaggtttatttcctttaagagtaatgctcatta s canFam2.chr12 5500684 66 + 75515492 ctacagcaaacattgtaattaatgaagaacatttagttgcatttcctttaacaataatgctcattg a score=18666 s hg19.chr6_ssto_hap7 4327987 540 + 4928567 tcacc-ctactgtttgacacagcattgaagatcctagtcaacaacatgaaaaataaaaca-----------ctaaggattaagagggaaaacacaaaacaatgctcgcagatgatactattatctacctggaaaaAGAGAGAGACAGAGAGAATATCAATAACAACAATGACAACAACAACAacaaaaaccccactaaaaccaataagaggatcgagcaaggttgtcccatataagatcaacttacaaaaatta-ttaatttctaatatttgaaaATCATATATCAGtatttgaatatcatatatccaataaagggttaatattcagaatatgtaaagaactcataaaacccaaca------------ataattgtttatacaaacagttaaaaagggggcaacaaacttcaacagacatttttccaaagatgatatacaagtggcaaaca--cacatatgaaaagatgctcagcattacttattattagagaagtgcaaattaaaacc------ataacatcatctaattctcattagcatggctactataaaaatgaaaggaaaaaggaaa s canFam2.chr12 5500957 519 + 75515492 tcactgcttctatctggcatagccttagaggtcctggtcaatgctatgaaaaagaaaactaattaagagttttaaggatttgaagggatactctcaga----gtttgctgatgatgctattacctatctgga--------gagagagggagaatatcaacagcaa-----------------acaaa----ccactgaaaccagcaagagaatccagcaagattgTCTCATGTATGACcaacccacaaaaattggttaacttctaatgtttgcaaattcta-----------------catatg----ataaggcattaatatccagaataaataaagaacctctgtaactcaacagaagcaacaaataaaaccacatggaaaaacaatttaaaagtggacaaatgacatgaataggtatttctctaaagatgatatgcaaacggctgacaagtatatataaaaagatgttcaacatcactaatcgttagagagatgcaaatcaaaccccacaatgaaataccacttcacacccattagaatggctactatcaaaaaaaaaaaaaaaaaaaaa a score=65138 s hg19.chr6_ssto_hap7 4328783 1572 + 4928567 agcagggacttaagcagatattttcc--cccatattcatagcagcactattctcgatagccaagaggtggaagcaacaaagatgtccatagacagatgaatgggcaaacaaaatatggcatatacatacagtagcttattattcagcct--aaaaaggaagaaagcactcttacatgctgcaacaagtatgaattttaaggacattaagctaagtgaaataagccaatcgccaaaagacaaaaactccatgattgcacttgtacagggtatctgaagtagtcagattcatagaaacagaatgtagagtgatagtagccaggggctagaggaagagagaaatgaggagttgttgtttaatgggtgtagagttctggttttgcaaggtgaaaaggagttctggagattggttgcacaaaaatgtgaatatacttaacactgctgagctgtacacttcaaagtggttaagacggtaaat---------------------------------------------gttatttttttaaccacaattTTTTAAAT--TAGATACATTCTTCTACATCAGAAATTACTGattcaaaagtagaattgcaataagataccaatcacaatagcagcaaaagctacaacatgcctaagaattaactgagcatactcaggactactatgaaaaagtaaagtttaaaaaccataataaagagcaaacaaaatgatttcaataaatgagaaaacatcct--gtttttgcatggtatgatttagtaataaaaacaagtcagttaaccccaaatttct--ataaattcagtataaccacaatcaaaattcaagt--------------------------------------------------------------------------------gggGAAGACAGAACTAGAAGTGAGTGTCCTCCCAAACTCCCCAGTAGGAAACTACAAACTTAGT-TTCTGTTGCTACTATGCGCTTGTCATTGTCCAAGGCCAAAAG---AAGCCCAGATTTTGCACCTCTCT--------CTCCACCC-----CACAACATTGACGTTTTTCCTTCTTGTT--GTGAATGTACTTCCTGTCCtccatctgtccttct--ggacccactctcaatacttctgcac-ctggggtctgcctcaggtgctgacctgcatgacattgaatggctcccatgctccctggcttcttcttgcttccagcatcagcctaagagcagagggaagaggggagtgaggtcagtgtttctaatcccttggcttcctccctacaaggtcaccttaagctg-ttgtgtcccttgactgaagggcactgcccttggcaaggtggtgactgtacagggcttgctgtccttctgagtcctgataaccccttctgtccctggcctctttggaccttggggtagtaacag-----------------------------ctatcctccacccagttctttgtaaatactttgctaataaataaactttccttgaaatgtcctatttcgagtatgccatctgttttctgttgagactctgaTACAATAAAAGCCATTTCTTT----ATTCCCTGCCCCAGACCAGCACGGCCAGGGGCCTCTTGGAAGCCTCATATGAAATGGAA--------GAGGAAGGGTCTGGAGAAACAAGG---AGCCCCCCATCTGGGAGTAGTCTCTATAGGTTTGGGGCCTCTCCACTCTCTGAAACCCCTGGAGACTGGTCTGGC s canFam2.chr12 5501476 1712 + 75515492 agcgggcacttgaacagatatttgcatacccatgttcatagcagcattattcacaatgaccaagaggtggaagcaacccaaatgtccatcgacaggtgaatacataaacaaaatgtgcaatatatatacaatggaatagtatttggccttaagaaggaaagaaaatcctgtcccatgctacaacatggatgaactttaaggacactatgctaaatgaaataagccagtcacaaaaagacaaatacggtatgattgcacttatatgaagtatctaacatagttaaattcatagaaacagaaagt---gtggtgattaccaggg-ctgaggaaagagggaaatggggagttgttgtttaatgggtactgaagttcagctttgcataatgagaa--agttttggagatttggtgcacaacaatgtgaatgtacttaacactactgaaaggtacacgtgaaaatggttaagatggtaaattttgttatgtttttattttttttttttttttttgtttttttttttGTTATGTTTTTAAT-ACAACTTTGTAAATGTTGGTTACACTTCCCTACACCAGAAATAGCTGCtttgaaaataaaattacaaaatataaccaatcacaatgacagcaaagtccataaaatttcgaagaagtaactgagcatacaaggacacgatatgaaaaagtaaatttcaaaaagcataataaagagcaaacaagttgatctgaatacatggggagataccctctgtttttgcattggatgactta-tatttttaaaaagccaattatccccaaattgctgaataaattcaggataacctcaatcacagttctagtttaattttgaggaacttgaaaaccttacagtaagatatatcagaaaaaataaagatccaCAGTTACATAAACCTTGGCTTAGGGCAGGGGAGACTAGAAATGAGTATTTTCTCAGGTCCCCGAGCAG-------TAATATTAGTCTTCTGTTATTACTGAGGTCTTGTCCCTGCATGAGGCCTGAGGCCGAAGCCCAGGTTTTGCATCTTTCTACCCCTACCACCACCCAATGCCACAACTTTGGTTTCTTTCCTTCAAGTCAAGTCAATGTGCCAATTGTCCTACACCTGTCCTTCTTAAGATCCAC-------ATTTCTCCAAGCCAAGGTCTGTCCCAAGCGCTGGCATGTAGGATATCACA-GTTTCCAGAGCTCTGTGGCTTCCCTTTGCTTTCAGCCTCGCTCTGAGAGCAGAGGGAGGCAGAGAGCGAGGCCAG-GTTTTAACTCCTTTAGCCCCCTCTC---AAGGTCACCTTAGACTGGCTGTGTTCCTTGACTGAAGGGCACTGTTGCCAGCAAGGTAGTGACA--------------------ctgaatcctgataacccctctaatctcttgcctttttggactttggggtagtgacaggtcagctgctacctccagtttatactgcactaccctctacctacttctttgtaaatacttctttg-taagtagactctccttgaactatcttattctgagtgtgccatttgttttctgttgacgctctgGGATAATGAAAGTCATTTCTTTCTTCATTCCCTGCCTCTGACCAGCCTGGCCAAGGGC------------TCATTTGCAATGGAAAAGTGCAAGAGAAAGGTTCTGGAGAGT--AGGTCTAGTCTCCCACTGGGGAGCAATCCTTTTCGGTTTGGGGCCTTTCTGCTTTCTGTAGCCCTTGGGGATTGGTGTGGC a score=9371 s hg19.chr6_ssto_hap7 4330548 195 + 4928567 AAAGATAATTTTCATAAATAGACATTGGGATTAAATGTCAATCTTGT-CTGTTTCTTTCACATGCATGTGTTCGTGGGTAGGGAGGCAAAGAGAACCTGGAACCTAGGAACATGCTCTCCCTCAGGGAAAAAAAAAATGCCAAGGATACCACCTCCCGTGGTGTATTTGAGATTTATTCTCATTGTCTTTAATGGT s canFam2.chr12 5503188 191 + 75515492 AAAAGTAATTTTCCTAAATAAACATTGAGATCAGATACCAATCTTTTTCTGGCCTTTTCACATGACTATGTACATGAATAAGGAGACAAAGAGAATCTGGAATGCAAGTGCATGCTGTCACTCAGG----AAAAAAGCACTGAGGATACACCCTCCCATGGTGTACTTGAGCTTTATTC-CATTGCCTTTATTTTT a score=14736 s hg19.chr6_ssto_hap7 4330743 309 + 4928567 CAAAAGAAGAAGCTCAAATGTGGGCTCAACGCGTTTCTCTAAAATATTGTTATCTGCCCCAAGTGTTGAAGGAACTCCCTGCACTGTGTGTGCCCTTGTTAACACAGGCCCAGttctttcatgggaggggaggtggactagatgacctttaaaaccaattctagctccaagTTCAGCTTTTAAAACAA-CAAGACATTGAAGGGCGAAAACAATTCTTTGTGCAGCTTGGATTATGTATAACCCGAAAGTCCAGctctctctctcttcccccgctcccctccctccctctctctatgtccctctccttct s canFam2.chr12 5503748 285 + 75515492 CAAAAGAAGAACCTCAAGCTTGAGGTCAACACAGTTCTCTGAAGTATTGCTATCTGCTCCAAGGGTTGAAGGGACTCCCTGCATTGTGCACGCCCTCATGAACAC-----------TTTTAtgggtggagagtgggactagatgaccttaaaagtcaattccaactccaagttcagcttttaaaATGAGCTAGACATTGA-----GAGAACCATGTATTATACCACCTGGATTAGATATAACCCAATAGCCCAACTACCTCTCTCC---------CCCCTCTCTCCCTCTGTCCCGGTCTCTGTCTCTCT a score=20333 s hg19.chr6_ssto_hap7 4331174 424 + 4928567 cacacacacacTCCT-TTTTTGGCAATCCATTATGTTTA-CATTCCATTCTCCTCATGCAGCATCCATTCTCTTCTCCTCATCCTCCTACAATTGGTGCACCATCACCCTTCTTCCACCTTCCTTTCAAGTACCACTCATTCCCCTGTGTAAGAAC----------TCCCCTTTCTACCTATAGTATTCTGACTTTCTGGATCCTAGCAGACCTACATA-TACTTTTCCCTATTTCTTACCTGGAAGGGGACAGCCTTTCCTATAAAACAAAAAACCTACAAAGTTAGGGCAGAGAAAAGCCTGCACTGGGAATCTCTAGAAAAGGAACTGGAAGCCGTCCCATTAGCTAACTCTCTACTTCCTTTCTCTGGGATCCTGCCACTTTGATTCCCACTGCTGTGACTAGAACTAGACCCTTCAGATCTGCAGCTTCTCC s canFam2.chr12 5504033 400 + 75515492 CATATACACACTCCTCTTTTTGGTATTTGATTATGTTTAACATTCTACTCTCCCCACACAGC-----------------------CCCAGAGCTGGCCTACCATTACCCTACTTCTACTTTCTATCCAAGCACCACTCATTCTCCCATGTAAGGACATGTAGTTCCTCCCTTTTCTCCCTAA-----TCTGGCTTCTTGGATCCCAGGAGATCTACCCAGCACTTTTTCCTACTCCTTATCTGGAAGGGGACAGCTTTCC-----AAACAAAAA-CACACCAAGTTAGGGCAGAGGGAAGCCTGC--CAGGAACCTCCAGAGGAGGA-CTGGAAGCTATCCAATTAGCTGACTCTCTCTTTCCTTCCCCTGGGGTCCTGTCACTTTGATTCCCACTGCTGTGACCAGACCCAGACCCTTTGGATATGCAGCTTCTTC a score=6992 s hg19.chr6_ssto_hap7 4331936 134 + 4928567 AAAACTGCCCAGATATAGACAAGGCCCAAAGCCCCCCATTCCTAGACTAAACTAGAATTTCAAAAGGAATTTGCTTTGTCAAACaaacaaaaataaaaacaaaaacagtgaatagaaaaaaatgaaaatgaaac s canFam2.chr12 5504433 122 + 75515492 AAAATTAGCCAGGCATAGATACCACCCAAAGCCCTACA----CAGACCAGACTAGCATTTCAAAAGGAATTTGCTTTGTCAAACAAAC------AAAAACAAAAACCATGAATGG--AAAAACGAAAATGAAAC a score=4169 s hg19.chr6_ssto_hap7 4332100 99 + 4928567 CCTTCCACTGACTTCTTCTGTTAACCCCTTCCAGAAGAGATGCTCTAATTCCAAGGATGCTTCT-GAAGAAATTATGGAGGTGTTCCAAATCAACTCATT s canFam2.chr12 5505035 100 + 75515492 CCTCCCATTGATTTCTCCAGCAAACTCTTTCCAGAACAAATGCTCTGATCACAAGGTTCCTTCTGGGGGAGACCATGGATGTAAAGGAGATCAATTCACT a score=147992 s hg19.chr6_ssto_hap7 4332199 3241 + 4928567 TCTTGGTTTCTTTTTCTTACCCATATTCTAGTATCTAGCTCTAATTCCAAAAACAATTCCACACCCTAGGTTTCTGTGTCCAGCAGGTGTCGCCCTTCGTGGGACAACAAACCACCAGCCAGCATCCTCTCTTCCTTAGGGTGGAGTCCATTCCCC--CAAAGGGCTCTCCTTGGTCTTGGGGTAGAAGGGAATGGAACGGTGGCTCTGAAGAGATGTGTGCTCACCAGCATGAGGGTCTTCAGAATAAAGTAATCTGCT-ACTTCCAGCTCAGGTAGACAAACATCCTACAGA---AATCTGTTCTTtgaccttggacaagtcacttaaatgtctctgagcctcacatcttttgtctgtaacatagagggaaacaatctgtcccttgtgtggttattgtgagaagagaatgagctacaaatataaaggtctgagaccagtgcctaagacataataatcactcaaGCTATGTTCCCTTCTGCATTCAGGGTATGGAAGAAATAACTGTCTAGAACTCA-ATCTGGAGTTAAGCTCTGTCCCCTGAATCCTGAGGGGTATGAGAGGTCTGCCTTACGGTTGTGATGAGGATCAA-----------------AGCACCTGGTACAATGCCTGGCC-AGAAAGTTGAATAATCGAATatagctaacgtcactattgcaggctggctatgtgcctggcggtgttcttagccatttacaagtatgaactcatttaatcctcataagatcctgtatgaggtgagtaagctgttaattcccTTCCTTGCCCATACTCTGTGACTCCAACCCACCACAGTTGAATTTCTCCTTATGAATTATAAATCAGAAAACGGCCCCAAATTCTGTCATGTCTAAGTGGGA-AAATGGAAGAAGGCATTGATTTCTCCCCTACTCAAGCAGAAGAGAATTAACCTCAGTCCCTG-CTTTGCCCATATTCCTTCCCCAGGGCCCCAGGAAGAAGACATGGAAAAACAATATTTCCACCAAAGTTTATTTCTCTGAAACAATCACCAGT----TGCTGTCCTCTATGGCACACTGAGAGCCCCAGGAGGGTCTTTAACTCCCTTCCTCAGATTATATTCATCCCAGAAATATAGCCTTGGACAATAATTTGGTTACAGCATAGTCCCAGGAATGAGGTCCCCC-AAGTTGCTAAGTTTTACATAGGGGAGACTGGGAAATTCAAAGAATTGGATGGAGAAACCATAGGATCCAAGATAATGTCAGGGGGTTGAAGATGTTGGAGAGGCATGGTAGCATCATT--GAGTTTGAATCTCCTTCTCACTTGGAGTGGAAGTTGTAGGATTCTGCCTCTAGGAAATGTGCCATCCTACAGAATAAATAAAAGGGAGATAATGAGGCTTCAACCCAACTTGCCCCCATCGTTTGTCACTGTAACCATCC---CATGCCTTAATACAGTGATACTGAAAACTCCAGGGCACCAACAACTAATACAAAGGAAGCACCTTCAGCCTCCTCTCCACAGACATCCCACTTGGTAGAAGAGGAGGATG---------CTCCTTCCTGCTCTTAATCCTAGCAATGGCAGCTTAAATCATGCCCTTGCCTAGATCCTCATGGAAGCTCACCCATATAATAATCAAGATTAGTTGAACCCAACACTGACCCCTCTAACC-CGCACCCCTACCAAAGGGCAAGTAGGGAAACAGACCAACAGAGATGTTACCTTCTGAATAATTGGACCCAGGAAGAGGAGTGTAACCTAAGAGAGGAAGATACTTGATTATACCAGTCTTTGTGGATGAAAATATCTAGCAGTATTCATAGCAAATGCAGTAGGAAGGAGAGAGTTAATCACAAACAGAAAGTAAGCAGAGAGTGGGACCAAGAGTGGGGATGGGAGTTCAGCGA-GTCACTCACTAGAGTGGCCAGCTCTCCGCCAGCTGATCACACCAAGAGAGAAGATGATGAGGCCCAGGCCCAGAGTCACTGCAGACACAGAAACCTTCAGGGTCTGCATGGGGGACAGCCCAGGTGCTGCAAAAAATAGAAACTTACTTGACCCAGTTTCTGTTGCTCACCCCCAGGGCAATTCCATTTATTGCAGCCACCTCTCAGTGGGTTAAAAGGTCCTTTATCCCAGCTCCAAGGGTCTAGCTCACACCA-CCCACTCCCAAGAAAATGATCTTTCTCAAATCAAACCCTCGTCCCATGGACCTCTACTCCTAGAGTAAGCCTGGGGAATCCATCTCCCCAGAATTAGCATCCTGGCTTCCAGGTCCTCTCTAATACAGTGGGGCCTCTCAAGGCATCCTCTTTCCTTCCTTTACCTCAAAGCCACCCTTATCA--GGATAAAGGGCTCCTCACTGTCCTCTCCATTGCCCCCACGGTAACAATGTTTGCTTCCTTACTTTCTCCAACTGAGCAGCTTCCTATTACACTGTCTTACCACATGTCTTAACCTCCAGTGGATCCATCCTGTGAGTTATCCTACTACTTGTGTACCTT-------CTACATCTAGATCTCCCATGTGTCCTTTCAGAGCTTGTCTCCATCCCACTCCACAGCCCCTGCACTTCCTTGGGCCGGTCCTGTTCTGAATCATGTCCCACTCAGATTCTTTTCCCATGATAAAATGAACACTCCATTTCTAAAGGGAGGCTCTTGTGCACGCTGTGAGGAGACGTTCCCCAGGAAAGTTCAAGTGAGCATGTGATTTCCACTCTCTTCTCTGTTCTCCATTCCCTTCCCAACTGCCCAGCAAGAAACAACACTTCCCACAAGGGGAAACCTGGTTACAGCAGCTGATCTGAGATCCTGTTCTCTGGCCCTTTGTAGACACCCTTCCTCTTCCTCATTTCTTCCTCTTTCTTTTCCAAGAGTCCCCAAAGCTGTGTGCAACTTCTCACGATACCTTTAACTACTCCCGACACTGAG-TTCAAACAGTGTTTGAACTGTAAGTAATTCTTTATCCACTGGCCCCTGAGCATGCATGCCAAATGGTCTGCCAGCCGTGGCTTTACTACTCCCGTATGCTTGGTAGAGCAGGCCAAATGCAGTACTGCCCC-ACACCAAGA-AAAGCCCCCCTTCTTC---AACCTTCATCATTCC--------------TTCAGCTCCCATCTGCT--TCTGGCACCAGAATAGTTGAAATCTAAGGAGGCTAGAATAGTGTATTACAATTTGGGGTTCTGAAAATATGATTGCCAAATTTACAGCCTCATTTCAAAGCAAGCACGCTCCCCTCT--CACCCTCAAACATAGACGCAGCAACATCAGCCACACCACCAGAGCAGCAATAGCA s canFam2.chr12 5505516 3188 + 75515492 TTCTGGTTTCTCTTCCTTGCCTGAAGTCTCCTGTCCCACTGGGATTCCAAAAACAATGCCACGCCCCAGCTTTCTGTGTCCAGCAGGTGTCGCCCCTCACTAGA-AACAAAATGCA---------CCTCTCTTCTACAGTGCAAAATTTGTACCCCAACAGTGGATGTCCCTTGGATTAGGGGTAAAAGGGAATGAAAGCATGGCTCTGAAGAGTGGCGTGCTCACTAG---------------AATAAGGCCATCTACTTACTTCCAGTTAAGGTAGACAAACATCCTATATAGAGAATTTGTTCTTtgatcttggacaagttattta----cctctgaaccttgctttcttcatctgtgacatggaaggagacaatcttttcctcttggcattattggaagaagtaaatgagatacaaatacaaag-ccttagcccagcacctaggtcatgataagcacttgagctatgggctctTCCCCATTTAGGGTATGGAAGAAATAACTGCCCAGAACTCCCATCCCAAGTTAAGCTCTGCCCTTTGAGTCCTA-----TCTGAG-GATGTGTGTcaaggctgtgatgaggatcaacaaaataatacacataaggcacttggtccaatgcgtggcccaGAAAGTTGAGTAAGAGGtaataactaccatcactactgtgggctcagtgtgtgcc-agcaacactcttagccatctgtgagtatgaacacattcaatcctcctaagaccccttatggggcaagtaaactgttagctccCTGCCTCTCCCTTATCCTGTGACTCCATCCAACCACAGTTTAATTTCTTCTTATGAGTTACAGATCAGAAGACTACCCCTAATTCTGTCATGTCTAGAGGGAATAACTAGGAGGAGGTACTGA---CTCCTCCAGTCAAGTAGGAGAGAATTAACCCCAACCCATAACTCTGCTCATGGGCCTTCCCCAGGGCCTCAGGAAAAAG-CATAGAAAAACAACATTTTCACTGGAGTTTATTCCTCAGAGATGATCACCAGTGACTCACTGGCTCCTGTGGCACAGTGTGGCCCCCGGAAGGGCCTTTAACCTCCCTCCCCAGATGATATTTGACCCAGAGATACAGCCTTGGACAATAACTTGATTACAGAATATTCCCAGCAGTGAGTTCCCCCCAACTTGCTAAGGTCTACATGGGATGGGCTGGGAAGTTCAAAGATCTGGATGGAGAAACCATAGGATCCAAGAAAATTTGTAGGGTCTGAGGATGTTGGGGGGACATGGCAACATCATTAAGAGTTTGAATCTCCT---CACT-GGGGTAGAAGTTGTAGGATTCTGCCTCTAGGAGACATGTTGACCTGCAAAAGAAATAGAAAGGAGATAATGAGGCTTCAAACCAACTTGACCCCATCATCTGTCTCTATAACCATCCATGCAAGCC---ATACAGTGGTATCAAAAATTCTAGATCACCAA-------------GGAGCCACTTTCAATCGTCTCCCCATAGATGCTCAATCAGATAGAAGAAAGGGGTGTAGGTGCTACTATTCCCTGCCCCTAATACCAACAATGGCAATTTAAATTATGCTCTTGGCTACATCCTGGTGGAACCTCACTCCTACTATAAGCACCATTAGCTGAGCCCAACACAGACTCCTGAGATCTCTCACTCCT-CCAAAGGACCTATAGGCAAATGGACCAATAGAGATGTTACCTTCTGGATAACTGGTTCCAGGGAGAAAAACATAGCCTAGGAGAAGAAAATGTTTGATTAGAGGA----CAGTGGATAAAAGTGCCTGGCATCACTCACAGCAAATGAGGTAGCAATGGGAGAACCACTCACCAACAGAAAGTGAGCAGAAACTAGGAGCAAGATTGGCAACAGGAGATTAGGGGTGGCACTCACCAGAGGAGCCAGCTCTCCGCCAGCTGAGCAAACCAAGAGAGAAGATGATGAAGCCCAGGCCCAGAGTCACTCCAGACACAGAAACCTTCACTGTCTGCATTGGGGACAGCCCAGGTGCTGCAAAAA-TAGAAACTTACTATAACCAAT--CTGTTGCTCATTGCCAGAGAAACTTAATTTAGTACAACCTCCACCTAGTAGGTGCAAAGGTGTTCTAGCCTAATACCAAGGGTCTAGCTCACACCAACCTACTCCCAAGGAAACAGACTTTCCTCAAC---ATCCCCATCCTGTAGCTCTCTACTCCTAGAGTAGCACTGGGGGACCCCTCTCACCAGAGTTGGCACCCTACCTTCCAGGTCCTCTCTAATACAGTGGGACCTCTCAAGGCATCTTTTTTCCTTTCTTCACCCTGAAGTT-CCCTCACCAAAGAATAAAGGACTCCTCATTCCCCTTTCTATTTACCCCATAGTGACAATTTCTGCTCCCTTATGTGCTCTACCTGAGTATTTGTCTATTAAAATGTCTTTCCACCTTTCTTAACTCTCAATGATCCCATTC-ATGAGTTACCTGAATACTGATGAATCTTTTCCTGTCCACATCGAGATTTCC-------------GGAACCTGGCTCCATCCCACTCCATAGCTCC--CACCTCCTGAAACCCATTGTATTCTGAATCCCACCCCACCTGGATTCCTTTCCCATGCTAAAATAAATATTCCATCACCAA-GGGAAACTCTGGTGCA-----TGATGAGAAGACTCCCAGGAGAGTTCAGGTGTGCTTGTAGGTTCCTCTCTCT-----GCTCTTCATGCCCTTCTCAGCTGCCCAGCAAGA--CAACACTCCCCA-AAGGGGGAGCCCAGTCTCAATAGCCAGGCTGGGATTCTGTTCTCTAGCCCTCCATAGATATCCCTCTTC------ATTTCTTCCCCTTCTCTTTCC--------CCATATATGTGTACCAAATCTCTTGGTACGTTTAATTACTTCCAGTCCTGGGGTTCAAACAGTGCTC--------ATTGATTCCTTGTTCATTAGCCTCCAAGCATGTAAACCAAAGTGTTTGCCAGCCATGGTTTT--TACTTCCCTA------ATAGAGTAGCCCAAATTCAGTACCACCCCCACACCAAGAGAAAGTCCTGTTTCTTCTGAAACCTTTTTTATTCCAGTAATGGGATGTAGCCAATTCCCAT-TACTGATCAGACAATACAATAGTTGGAATCTGAGGATCCTAAAATGTTGTATCACAATTTTTGGTTTTGAAAACAAGGTCACCAAATC-ATATCCCCTTTTCAGGACAGCCATGCTGCTCCCTGCCACCCTCGGGCACACATAAAACAGCATCAACCACACCACTATGCCATCAATGACA a score=58602 s hg19.chr6_ssto_hap7 4335531 1162 + 4928567 ATATTTCCATTTCTTTATCCCATTTCCCCATT-CTGGTCCTAAGCCCCCCGTAAGTTCCTCCAGACTCAGTCCCCATTTTCAGCACTTCGCTGTCTACCATGTACCATGTATCGATCCACATC-------------------------TCATTTT--------------------CTCTGCTTTGACCCTAATTCCATCCATCTGCCATACACTTACTCCAGTCCCGAAGGATGGGCTCAGGAGCCCCAGTGTGCTCTACCACACAGGTGTAAGTGTCCCCGTAAGAGGGGGTTAAGGCTAAATGGGAGAGGGTCTGGTATGTCCAGTCTCCATTGGGCTGGGCAGTCTTGTGCGCACTGCTGTGAGGCATGACAAGCTTCCCGTTCTTCCTCCACGTGATAGTCACTTCTGCTGGATAGAAGCCCCACACATAGCAGGCCAGCATCACAGGCTCCCTCGTGTTAAAAGGAGTGGTTTTGGCTACTTGCACAGATGGTGGCCCTGCATAGGAGAAAAAAACATGTTTAGGAAGGAGGGTGACATTCTGGCTGCTTCCTCAACCTGGTTTCTTCCCTATCGCAACTCTTCGTAGATTTTGC-AACCCACTTTCCACCCCAGCCCCCTCTGCC-ATGCTGCCCCTTGAAGGGGAACCGTTAGAATGTATTCCTGCATTACTCTTTCTTCTCTCCCATTCCTTCATTGCCCCTTTCTTTCTTTCCTCCTCCAGAATTATGTTTGATTACAATTAGTAAAAGCCAGATCTGAACTGCAAGCTGTTCTAGAAGTTGTTGTATTTATTTCAAGTACATAAACTGGAAAGTATTTGAAATAAGGAAGCTAAGAGTAATCCAGAGTTGTACATTGGGTTTTTTTAAGGTGGAAAAGGAATTTTTCTC-CAAATCTTGTTTAATACGTTCTTTTGCT--AGTTAAAGC----TTTTTCTCCTCACATAGTTCAAGGAAACAAGCCTAACTTAGGACTCA--CTCTTAAATTTGGAATGAATGTAGT-CAAACTAATGAGATTGCTAATACTGCCATCTTTTACTAATTTACTCTCCTAGGTGATCCTCTTGCTTGCCTCTATCTTGACATTTTTCAAA-CACAATCTTAAATAAAAATCCAAGGAATTATGTTAAAATGCAGATTTCCTAGGCTGTATCCCCAGATACTttctttcaacagatctggagtggtactaaggggcttgcatc s canFam2.chr12 5508708 1193 + 75515492 CTCTTTCTATTCCTGTATCCCATCGCTGCATTTCTGGTTATCAACCCTCTACCAGTTCCTCCAGACTTGCTTCCCATTCTCAGCCTCTCCCTCCCTGCTATATACCATGGACCTGTCCATGTCACTCCCTGTGCCAAAATGTTGGTGTTCCTTTTTTAGCCACCCTCTCGCAGCTCTCTGCTTCAACCCTAATTCCTCCCACCCACCATACACTTACTCCAGTCCTCACAAACAGGCTCAGGGGCCCCGATGTGCTCCACAACACAGGTGTAGGTATCCTCATAAGAAGGGGTTGTAGCTAGATGGGAGACAGTCTGATATGTCCAGTCTCCATTGGGCTGGGCCATATTAAGGGCACTACTGTGAGAAGGGACAGGCTGCCCATTCTTCCTCCATGAGATGGTCACATCAGCTGGATAGAAGCCCCACACGTAGCAGGCCAGCATCACACTCTCCTTCGTGTTAAAAGGAGTGGATTTGGCTACTTGTACAGTTGGTGGTCCTGCATAGGGGGAAAA--CATAGTCAGGAAAGAGGACAACATTCTGGCTTTTTCTCCAACCTGGTTTCTTTCCTACTTCAATTTTTCCTGGCTTCTGCCAACCTACCCTCCCCACCCCCACTCCATGCCTCCACATCCCTTTGGAAAAGAGGAGTTAGGATTTACTCCTGCTTTGCTCTTTCTTTCCTCCCATTCTTTCACTGCCCTTTCCTTTCTTTCCTGCTCCAAAATTACAGTTGATCACATTAAGTAGAAGCCAGTTCTGAATTGCAGGCTGTTCCAGAAGTCGCTGTATTTATCTCAAGTATATAA-------------------------GCTAACAGTTGTCAAGAGTTGTAGGTTGAGGTTTGTAAAGGTAGGGAAAGACATCTGCTCTCAAATCTAATTTAACAAACTAAGTGGCTTCAAATGAAGCAGCATTTTTTACTTCAGATAGTTTAAGGAAACGAGCCTAACTCAGATCTAATGCTCTTAAATTTGGAATTG-TGTAATGCAAATTTATGGAATTGTTAATATTGCCATTCTCTACTACTTTATTCGCCTAGATGACCCTCTTGCTTGCCTCTATCTTGGTGCTGTTCAAAACAGAATCTTATATAAAAATCCAAGAAATTGtgttaaaatgcagattccctaggttgcttcccaaaatattttcaccaagtggatctgtagtgacattcaagggcttgcatt a score=12609 s hg19.chr6_ssto_hap7 4336693 268 + 4928567 tttaacaagcacctcctccaggcaattctgagaaaggtggttcagaaaccac-ccttgagACACACTGTTCTGTACTGTGGAGATCTTCAAGTTTACTTTCACAAACTTCAAGCCATTGTCAATGCAAGAGTTTAAGGGTGAGAAAAAGCATGTGtcagaatcccctggga----ttccaaatattcccatgcctgggcccacatcagatctggaacatcaaaatctGGGATAACAAGGCAAGAACATCTTGGG---------------------------------------------TATGCATCCTGAGATGCCC s canFam2.chr12 5510118 313 + 75515492 tttaacaaacatcttccctaggcaattctgagaaaagtggcccagaaatcacaccttaagaCACATTACTCTGTCTTGTGGAGGTCTTCATTTTT-CTTTTACCAATCTCAAGTCATTCTCAGTGGAAGGGCTTTGGGGCAAGAAAg----catgttgaaatcccctggaaagctttctaaatattcctatgcctgggcccatcccAGACCTAGAATATCAGAACCTATGATAAAGAGGCATGAGCATTTGGAGAAAAGGCATTCTGGCTATTCTTACACATTCCTGGTTGAACTTAATTCTGCATCCTGAGATACCC a score=28904 s hg19.chr6_ssto_hap7 4337015 526 + 4928567 CTTCTTTACTCCTGTTCCACTCACGTCAGCCACCTTGTTCCCCTTGAGGTTCAATCCTCCGTCTTTCTACATTTCAGATCCACACATTTTCT-CTTATTTGCTGCTCAAATCTCAAACCCCT--------GGGCCACTGTGGGATCCTCCCTGGCCTGCCCTCCT-----AACTGCACTTCCTGGTAGCCCCTCTGCACCCCTCTCTCCTCACGTGTCCTGTTGGTCAGTGATCCCCAGAAGGGCTGGGTGTGTGTGGCACAATTCTGAAGCCCATTGCGCAAGCGCTGCATCAGGGTGTCTTTTTGGTTGAGGTGCTGTGAGAGGACATTCGCCAAGCTATTCAGCACCCCAAATTCGCAAGGGGCCATCTTATTCTCCTCTGGATCCCAGCAGGTCAGCAGATCCTTGTTGAAGGAGATGCAGTATGTGAAATCCTTTGGAGTCCCAGCATCATCCAACAGACAGGTGCTTTCCACATGGGCCACGAAGCCACCTAGAGGAGCCAGGGAAGGGAGAACAGGTCAATGTCTTCTACTGG s canFam2.chr12 5510477 529 + 75515492 CCTCTTTATTCAC---CCATCCCCATCAACAACCTT-------TTGAGGGTCAACACTCACTCTTTCTATATTCCGGGTCCATACATTTTCTGCTTGTTTCCTCCCCAAATCTCAAATCTCTTACTTATGGAGGGATGGAGCGATCCTCCCTGGCCTCCCTCCCCTTTCCAACTGTGCTTCCCAATAGCCCCTTTGCACCCCTCTCTCCTTACGTGTTCTGTGGGTCAGTGATCCCCAGAAGGACTGGGTATGTGTGGCACAGTCCTGGAGCCCATTAGACAAGCGCTGGTGCAGGTATTCCTGTTGGTTGAGGTAATCTGAGAGGTAATTGGCCAAGACATTCAGTGTCCCAAATTCATAAGGGACCATTTTGGCCTCATCTGGATCCCAGCAGGTCAGCAAATCCTTATTGAAGGAGACACAATATGTGAAATCCTTTGGAGTCCCATCATCATCCAACAGACAGGAGCTTTCCACGTGAGCTATAAAGCCACCTACAGAAACCACAGAAGGACG-GCAGCTCAAAGACCTCTGCAGG a score=78950 s hg19.chr6_ssto_hap7 4338669 1701 + 4928567 AACCTAAGCCTTGGTGACATCCAGCTAGTCTGGCACAGATTTCCTGC-TCAGGGAACATCTACTGACCAAGCTCATACACTGAAGTTTCTGAAAGTCTGATTTGAGGGAGTCAGTAGAAGTAGTAGATAAGTTTTTAGATCCAGTCTCCTCTTTATGCAAGACTAAGCACAGGGATAGGAGTAGCCCCCCGAGATTATTTGCATGTTTAAACATGACAATTTGCCCAGAACACAGACCTTCAGTAAGGCAAATTATTGAGAGAGAAAAAGGGTCAAGAGAAAGAGTCAGCCTTGTATTGTGCTGGAAATATTAAATattcacttcg-cacatatttatgaagcacttgctgcatgcaaggcactgtgctaggagctgaggaggcagcaataaataagatgaacattgtccttgcctatattccagcagggaatatacactgcacagataattataca-gattaattacattaaaattgctacaaag---------tacaaagtgctataggaatgtataccagggAGACAAACTA-TCTGGGGTGTC-AAATGCAATTACAAAACGGAACACCCTTACCCTGAAACAGGAGCAGGGGAAGGGAGAGTCCCCAGAAGAAGTGTCCTTACCTGCTCCTGTGCAGCCCAGGCTGAGCCCCAGCAGCAGCGGCAGGAATGTGATCATGCTCTGCTCTGTAAAGATGCCGGGAGTTCAGTCCCCTGGACCAGCTCTTCCAGGGTCCGTGGGTCCTCGCCTGTCCCAGAAGCCCCAGCCTGGGTAGATGATCTCCAGACACTGAGCAGAATACTATATTGCCCGGGTCCCTTGACCCC--CCAAATGAGTGATGTGGGGATACCCAGCCCCTAGATATTAAATCTGTTCCTTCCAGCTCACGGGAGTCCAGTGTCCCAAACAGGGA-----CAGATTGGCTAGGTAGGCAGGGACAAATGTAGAGACAAATCACTGAGTGCCTCAGCCTAGCATCATCAGTTACTAGGTAAACGTCATCCTGCCTTAGTC-TTAGACAACAGGTCTCCTTGTCTCTCTTAATTCTTTTTCTGC-AGAACAACCA--------GTAGATTTCCGTAGATTACTGGAGAGAATAATCGCAATATTCCCAGGATGTATGCAGCCTGGGCTGCCCACTGGTTTAACTTTTTCTTCTCAATGCTCTCCCAAAAGACCAGGACCAGATAACCTCTCCTATTCCTTACAGGGAGGTTACCCAAGAAGATAATTACAAAAACCCTT-GTCTGTCCT--------------GAGATGAGAGGACCCAGAGCCCTTCTGGGGCAGGTGGCAGAGGCAGGGCTGCTGAGAAGGAAGAAGGCACAGACAGAGTACAGAATTGTCTGGTCTCAAAGCAAGACTGCAGAATAAGGGAAGCAGCGCCACCATGGAGATCAGGAATAGGGGCCTGGAAAATCCCTCCATGGGCCTCCATTGTTGCTTCTGTTCTAGCCAGTCAAGCTTCATTTCCTCCTCAGTTATAATAGCTGCTTTCCGGAGCTAGTAAACCATATCCTCCTACACTCTGAGCAATCTCACGGGGTAGACCGCAGGTTAACACCTCTCAGACTCCTTGAAAAATAGCTGGTGACGGGTCAGTGCCCAGAGCTCACCTGCCTTTCGCCAAACTCTAAACACCCCTGTGTGTTTCCCCTACTATACCCTGTTCCCTGGGGGCAGGTCCCTGCATTATGAAGCCACTAGGAAAATGAGAT s canFam2.chr12 5511007 1672 + 75515492 AGCCCAAGCCTCAGTTACACCTAATGAGTGGGGTGTAGTTTTCCTGCCTCAGGTAGCATCTAGAGACCACACTCATGTACTGGAGTCTCTGAGAGCACAAATTAAGGGAATAGGTGGTAGTAGCAGAGAAGTTTTCAGATGCTATTTCCTCTTTATG--AGACTAAGTATGGGAACAAGAATAGACC---AAAATTATTAGCTAGTTCAAGCA---CAGCTTACCCAGGACA-AGGCCATCAGTAGAGCAAATTATTGAATGAGAAAG-GGGTCAAGAGAAAGAGTCAGCTTTGTTGTATGCTGTATATATTAAATattcactccaatatatatttatgaagcac-----acacacatatta-tgtgctaggagctgaggatgcatcagtaaacaagacagatattgcccttgcccccaCTCCAGGAAATGATATGTATTACACAAATAATTATACAAGCTTAATTATATTAAGATCACTACAAAGATAGAAAGGTACAAAGTGCTATCAGAGTACATACTAGAGAGACAAACTAGTCTGGGATGTCTGAATCCAACTG---------ACCCCCCTGTCCCAAA---GGAGCAGAGGAAGGGAAGGTCCCAGGCAGGAA-ACCCTTACCTTCTCCGGTAGAGCCCAGACTGAGGCCCAGCAGCAATGGTAGGAGTGTGGTCATGCTTTGCTCTAGGAACACTCCAGGAATTCAGTCCCCTGGACCAGTTCTTCCAGGGTCCTTGGGTCCTCGCCTGCTCCAGTAG-CCCAGCCTGGGTAGATGTTCTCCAGACCCTGAGTGGAATACCGTATTGCCCCGGCTCCTTGATCCCCACTAAATGAATGATTTGGAGCCACCCATCCCCTAGATACTAAACCCGTTCCAACCACCTCTTCTAAGTCA---GTCCCAAACTAAGAGTTGTCAGATTGGTTAGAGAGGCGAGGACAAATACAGAGACAAATCGCTGAGTGCTTTAGCCTAGCATCATCAGTTACCAGGTAAATCTTATCCTGCCTTAGGCTTTAAACAA-----CTCCT----TCTCTTAACTCTTTCCCTGTGAGAAAGACCAGTCTGTAGGTGGATTTCCTTA-ATCAGTGAAAAGAATAATCCCAATATTCCCAGAACATTTGTAACCTGGGCAGCCCAATGGTTTAACTGTTTCCTTTCAATATCCTTCCAAAAGACTGGGACTAGATAACTTCTCTTGTCCCTTAGAG------TACTCAG------ATTTTGAGCAACCCTTGGTCTGTCCTGTTACCTGGAGATGGAGGTGGGATGGTGAAAGGCCCTTCCGGAGC-TGTGGCAGAGCCAGGAATACTAAGATGGAAGGAGGTATTAGGAGAGTACAGAGTTATCTTGCCTCAAAACACAACTGCAGAATAAGGGAAGCAGCTCCACTTTAGAGGTTGGAGACAGA---CTGGAAAATCCCTCCCTGGGATTCCATTGCTTTTTTTGTTCTAGCCAGCAGAACTTCGTTTCATCCTT----------TCTGCTTTTTGGAGCCAGGAAATCCTATCCTCCACCACTCTGAGCTATCTTA--GGGCAGACCACAGGACAACTCCACTTAAAC-CCTTGATAAATAGCTGGTAATGGATCAGTTCCCGAAGCTCAACTGCC--TCCCCAAACTCAACATTCAACAGTGTGTCTCTCCCACTGAGCCTATCTGTCCCAGAGCAGGTCCCTGCA-TATGAAGCCACTAGAAAAATAAGAC a score=26215 s hg19.chr6_ssto_hap7 4341610 543 + 4928567 TGAAAAAGCAGATTTTAAACGGCAATTCATTCTTCTATCCCATTGTGAACTATACAGTTGATGGA-TTTTCCATCACTAACTTGAAACTCTAAATTGGCTTCCTTCTGCTCCCCAGTAGGTTTCAGGGCTGCCTCTTCACATCTTAGTTTCTGAGAACTCTTGGATTTTATTAAATAGTGAGCTAAACAAAAGAGGATTGTGGAAGGGGCCCCTTGACACCACACTTACCTGCCCTC--CCTCAAAGTCCCTGATCTCAGGAAAATCTAACACTTATGAAGAAAATGGGG-----ATAAAAAATGCATACAAAGATTATTACCAAAAACGAAAGATTCGTTGTGTAACTAATTGAGATTAACTGAAGCTCTG-CCATAGCTCCCAGCCACTGCCCCCACTC--------ACCT-----------TGCTTATATACTCTAACTCTGCTAACGAACTGTCAAGTGTGTTGGAATGGGCAGAATATGGGGTGGGGAGTGCATAATCTGTAGAGCTTC--------TACAGATACAGTGCTAGGTAGGTCCTTTCTATAATATCTCATCTCATCTTAAAAGAC s canFam2.chr12 5512680 564 + 75515492 TGGAAAGGCAGATTTTAACTGGCAATTCATTCTCCTATTCCACTGCGAAGTATATAGCTGGTGGCTTTTTCTATCACAAACTTAAAACCCTAAATTGGCTTCTCTCTATTCCCCAGT-GGCTTCAGAGCTGTGTCTCCTCACCTTAGTTTCTGCAAGCTTTTGGATTTGATTTAGTAGTGAGCTAAATGAAAGAGGATT-----AGGAGACCCTTGATACCACACTTACCTGTTCTCCTCCCCAAAGTCCCTAATCTCAAGAGAGTC-AATATTTATGAAGAAAAAGAAGCATGTACCAAAAATGAATAGAAAGATGAAAATAAGAAACAAAAGAC---TTGTGTAACTAATCAAGATTAACTGAAGTCGTGTCCATGTTTCCCAGC----ACCCCCACTCTCAACCCTACCTTCATTATAAGATGTTTCTATACTCTACTTCCTC-AATAAGCCATCAGGTGAGCTAGAATGGGCAGAAAATTGGGTGGTGGGTCCAAAATGTGTTGAGCTTCAACTTTGGAACTGATACTATACTAGGTAGGCCCTTCCCATGTCATCTCATATAATCTTAAAAGAC a score=87880 s hg19.chr6_ssto_hap7 4342468 2163 + 4928567 TTAATTGTCCTCATT-TCCCAGGTTGGAAAACAGGTCCAAAGATTCACACCCAAGGTCTAAAGGCTGTAACTCCTCTTCTTATACAGCTGTTacacatgcacatgtgtacacacacacacacatacacactctcttgagcatgcccacacactcacTACATCTTGGAACTGGGATGGCTCAAATAAAGGGAGTTAGTGA-GGCCTCCGCTGAGAAAGAGAGAAAGAGAAGAGTCACAATCCATAACCCAATTCACCCAAGTCTTATCTTTCCTGTCCTCAGAGTTCCTTCTGCTCTGAGAACCACCGTCCCTTCCACTTTCTCTTTTGACAAGTTTCAAAACTG----AATTTTCCCCCACACCCCCCCA-----ATACATTTCCCCCTCACATTCCTCCCCATCCTGCCCAGGTAAGCTGTTAGCCTAACCTTATAGGAACCAAGTCCTGGGATCCTTTTCAATGTCTACAAAGCCTAGCCCTGGCAAGGGAGCACTGGCTGTGTGGTCCTGTGCCAGCACTGAACATGGCCCTAGCCAGTAACAGTGGGGCTGAATGTAGTTCCCTCTTATGTCTAGATCTCTGCTCCGGCAGTCAAAGGAGATGTGAAACCTTCTGTGAGGCCACAACAGGAAATGGTAGGAGAGGATTTCACTTCTCTATTAATTCAAACACTGAGGGAGCTTTTTAGAATAAAGAAGGACAGAAAACCCAGACACCTGTGCTCAGCAGTGTTTTCCTTCCTCTCCTCCTCCCAACCCTTCCATTTTTACAGATATAGCTCTGTCTTTCCACCTCTAGCCAATTCAAAATAACATTTCAGTTGCTCTGTCCATTGTTACTTATTTGTTAATTATTGATATAGCACCGGGACCG----------AAGAGGTATGGAGCCCCAACCAGGTTCCCACATGTTGCCTTTCTTTTATTGCCTCTACACAACCACCCAAAGAGTGAGTCCTCTCCTTTCCCATTGCCTCTGCCCTTAGCCTGACCACCACATGCCTGCAGTAAACTAGTCCCAGGGTTTGTGTGCAAAGCATTACTGGGAAAATACAGAGTGAGAAGATATGGATTCTGCCCCCATATCGCTTTGCTTGTACGTCAATTGGGGAGTGAGAACAAACACTTT------AAATAGTTTATATTAAAGTAAGTAAGCAATAAGGCCAGTGGTCTTAAAAGAGAAGAGAGAAATCACCATGGACATGGTAGACAGGGAGTACTCTCAGTCGAGAGGGCCTGGA-ATGAGCCTTGAATACTGGGCTGGATTTGTGTTGGAGAGGAGGAAGGCAGTTGGCATTGTAGGTCTGGTGTATAGCTCCACAAGCTTGACAATGCTGTGAGGTGCCATCAGGGAGGAGGTGTCCTACGAGAGCCTGGGTTAGCTAAAACAAAGACAAGCTACAATAACGTCACTGGCACTGCACGTTGGAGGAAGTCACAAATGTGATTTCTTGTTTTTTTCTGAGAGTATGGCCATAATAATAAATCTCTTCTAGGCACTTCCTAAAGTTGCTCCATGTCAGTTCGCAGGTTC----TTGGGGCAGACGGTTTTAACTGAAGTCTCCATTTTATAAACAC-AAAATTGCTCAACCAGTTAATCA-----------CGCCTCATAGCATAAGACCACATTCGTGA----CTTCAGTGTCTTTTCAAAA----------CTACACACACCTACATCCTGCCAAGATTATATTACTTGCCCAATCTGTCCAATCCCCACCCCACCCCTGCCATCTACCCCTTACCTCACCTCCGCCCACACACACACCCTCCTACCCTGTCAGGATTCACTGCTCTAGACCCTGACCTTTGGATTATAGTTTCTGTAGTCAGTTCACCATCCTTCCAACCTACAGTCAAATTATTTGAACTACTAGGG-ATAGTCTATCTGATTTGCCACAACTATTTTTCCTTTTTTAattttattttttgccaccacaactattgaagaat---gctatcttcatcttacccacgagaaaatggaggcagagggaggttaagtggttgcccagatttacccagatactaagtaataaaaccattacttgaactcaggatttattactttaaatcctgtattgccaataatcaattggaaaataactgaaaattgcctactatttataataacaataaaaaccatagcatatttatgaattaaca-tatcaaatataagaattttaagaa s canFam2.chr12 5513244 2040 + 75515492 CTAAGTGTCTTCATTCTTACAGTTTTGAAAACAGGTCCAAAGATTCACA--------------------------------------------------CACAGGTGCACACACGCA--------------------AGCATGCCCACACACTCACTACATCTTGAGGCTGAGGTGACCCATGTAAAGGTGGCCAGCGCTGACCTCCACTGAGAGAAAGATAAAGGGAA-AGCC----------ACTTGATCTGTTCAAGTCTTAGCTTCCCTGTTCTCAGAATTCCTTCTGTTCTTAGAACAAGTGTCTCCT-GGCTTTCTCTTTTAAC-AGTTTCAAAACTGTGCAAACTCTTCCCCCCAACCATCTGCATACACACACTTCCCCTTTACATTCTTCCTCCTCCC-CCTAGGTAGGCGGTGAGCCTAACCTTGCAGGAACCAGGGCTTGGGATCCTTTTCAATGTCTACAAAGATT-GCACTGGCACAGGAATGCATGCGGTGAGGTCCCGTGCCTGCACAGGGTTGGCCACCTGCCAGGGA-GCTGAGGCCACGCAGAGTTCCCTCTTGAGTCTGAGTGTCTGCCCCGGCAGCCAAAGGAGATGTGAAACTATTTGTGAGGCAGCAGCAGGAAAT----GCAGAAGATTTCACTTCTCTATTAATAAGAAGACTGAGAGTACTTTTTAGAATAAAGCAAGACAGAAAACCCAGAGACCTGTGCTCAGTGATTTCTTCATTCTCCTCTTCCTCCTAA---------TTTTACGGACATAGGT---------AACCCAT---CAACCCAAAAGAACATTTTAGGTGCCCTGTCCATTG----TGATTGAATAACTATTTCTGTAGTGCCAGGACCACCAGGACCATAGGAATGAGGGAGCTGTAGCCGCGTTCCCACATGCTGTCCCTCTTTTACTGGCACTACCCAAGCTCC--AAGAGCCAGTCCTCTCCTTTCACA-CACCTCTCCCCCTGGGCTGTTCACCACGTGCCACAAGTGGACTAACTATGGTGTTCCTGTGCAGAGCATTACAAG--AAATACCCAGCTAGGAGATATGGACTCTGCCCCCACGCCA-TTTGCTTTTAGGTCAATTGGTGAATAAGAAAAAACATTTGTAAAGAGAAGAGTTGATGTTAAAGCAAGTAAGCAATAAGGCCAGTGTACTTCAAAGAGAAAAGAGAAACCATTGAGGGCATGGTGGACAGAAAGTCCTCTCCACTGAGGGGTGCTGGAGGTGAGAACCAAATACTGGGCTGAAGCCACGTC-CAGAAGAGAAAGGCAGTTGGCATCGCAGTCCTGACATATAACTCCACAAGCTTGGCAATGTTATGAGGTGCTGCTGGGG-------GTCTACCAGAAGCTTGGATTGACTAAAACAAAAAGGAACTACAATAACATCATGGGCATCACACACTGAAGGAAGTCACAAATGTGGTCTCATG-CTCTTCCTGAGAGCATGGACCTAATTATAAATCCCTTCTAGGTACTTCCTTATGTTGCTCCCTGTAAATTCTCAGGTTCCTCTTCTGGACAGATGGTTTTAACTCAAGCCTCAATTTCATAAACTCAAAAATTGTTCAACTCATCAATCATTTGTGATCTGCAACCTGTAGTGTGAGACCACATTTGTGACTTCCTTCAGTGTCTTCTCAAAGAACAGTGTCTTCTCAAAGACCTGCACCCTGCCAGGATTTCATTATCT-CCCAGTCTGTCCAACCTCATCCCTACCC----------ACCCCCACCTCACCTCTGTCCTCCCACTCTCTCTTCT---CTAT-GGGATTCACTGCTCCAGACCCTGACCTTGGGGTTACAGTTGCTCTAACTAGCCCATTATCCTTCCCTCCTGCAGCCGAATGACTTGAACGGCTAGGGAatattctacc------------------------------------tcctttgctaccgcaactcttgaataatatcattatctccatcttaactatgataaaatggaggcagagggaggtc-agcaaccatccagatttatccagacat----gaatagaaccatgatttgaactgaggatttaggattctaaaatctatactcctaataatcagttagaaaacaactgaacattgctagccatttataatagtaacaaaaaccataatgtgtttagaaattaacattaaaaagtataagaactttatgaa a score=13555 s hg19.chr6_ssto_hap7 4344631 328 + 4928567 aaaagaaaactttattgaagtgcacaaag----acctgagaggtgtagagatataccatattcatggataggccatgctaacataatga------caacctctccccacatctctaacctaaatgctaccccaattaaagtaacagtaggatttcaggagaatttaacaaactgattatagaatgtacatggaaataaagtccaagagtatcttagaatattttgataaagaaaaggaaaataaattttttgggaaggtggtg----aaggaatggagactagttctactaaatagtaacacatattaaaaagccaaaataatcaa-acaatatgatactgat s canFam2.chr12 5515496 334 + 75515492 aagggaaaactttattaaagtacataaatgaacacctcag------aaagtgaaaacatattcatggatggggcatcctaacataacaaggaagttaatttcttcccatatcactaacctaaatgctgtcctaaccaaa-tcatagcaagatttggggagaacttggcaaagtgattctaaaacatacatggaaatcaaatccatgaatatcttagacaattctga-aaagaagagcaaaataggatttagggagaggtgaagtgatagagaaatgaaaccagccctgccaaatattaaaacacg-tgaaaagccgtaataattaagacaatatgacactgac a score=12456 s hg19.chr6_ssto_hap7 4344959 271 + 4928567 tagtaatgagagaaaagcaaattaaaacaacaaaataccactctacac-ccaccatgttgccaacatttgaaagtcaaataattacaagcattaatgagcataaagggaaatgtgaactatcttgctctgttgatgggagtgtaaactgTTTATGATCCCTGAATTATAGAAATTATAAACTAGTTGGGCGAAAAAA-TTAACATAGGAAATAAAGCGGCATATCC-------CAATCCTTAGGTTGA-GTGCTTTAAGTCTTGGAAGATTTCAATAAAGA s canFam2.chr12 5518151 267 + 75515492 tagtaacacgaggaaggcaaattaaaata---------cacccaccatactgccatattgccaacatttgaaagttaaataatttcaagtgttagtga--ataaatgaaaatgagacccacctt-ccctgttgatggaaggataaattgtttataatccctGAATTACTTAAATTACAAACTAGTTAGGTGAAAAAAATTAACATATGAAACAAGGCAGTATATCCTTGAAAGCAGTC--TGGATCAAAGTGCATTAAGTCTTAGTAAAGCTCAATAAAGA a score=29806 s hg19.chr6_ssto_hap7 4345230 722 + 4928567 GAAATTAGGGGCAGGTTCATGGAATAAGTTGAACTGGAGTTGGACCTATGGAGTGGGTTAAGACAGGAACAAGATGAGCAGAATAAAGAAAGCATTCTTGTGAGAGGAAAGAGCCTGGGCAAATGCCCTAAACCAAAACCAGATATAATACC-TCAAGGAAGAGTGAGGAAAAAAGATTTATTCAAGAATA-GCATTCCTGCTGGGAATAGTGAGTAATATTTTTTATTAGAAAAGGGGCACCAGACTAGAGAGGATACTGAGTGCTTCTAGAGTACTT-AAGTAACAGTATCAtagaaggtttcatcagagagcatctaatct-aagcccatcattttacagatgaagactttgaggcccagagaggggaagtgacttgtctaaagtcacacagcATAATAAA-GCACTTTTAAGTCTTGCCTGACAGGAAATATCTAGATAAGTTGGAAAACAGAGAGACAGAGAAATTAGGAAGAACTAGAAAGCA-----CCACATCTAGAATTACTAACATGAGAATAAAAAGAAAAACATCTAAAATGGAGAAAATACAATACTTGAAGCTAGTATTGAGGTATATTTCAGAAAAGA--GAAAGAAGTCTACGAGGCAACTAAGTTCTCCTCTGAAGATCAAGACCAATaatgataaggttaggttattcagcacattttctatgtgccaaacactattttaa-gcattctgtaggtattaacttatttaagcttcaca s canFam2.chr12 5518568 680 + 75515492 AGGATGAGGGATAAGTTCATGGAAGAAGTTGAATTTAGGTGGGATCTATAGCATTGGTTAAGCTGGGAACAAGGGGAGCAGAATAAAGAAGGAATTACAGTGAGAGGAA---GCCTGTG----TGCCCTAAAGAGAACACAGACACAGTACAGTCAAAGAAGAGTGGTGAAACCAGATTCATTCAAGAGTAAGGATACCTGTTGGGAA-------------------------GGGGGACACCAGACTAGAGAGGGTCTTTAGTGCTTCTTGAGTATTTCAAGTGacagtatcatagaatgtttgaccagagagcatctaatgtgaagcccatcattttacatatgtgggaattgaggtccacaaagggggtgtaacttgtctaaggtcacacagtgtaataaacgcagTCTGAAGACATGACTGGCAAGAAATTTCTAGATAAGTTGGAGAATAGATAAA------AATCAGGAAGAACTACAAAGGAGTAAGACACATGTAGAATGG-TAAAGAGAAAAGAAAAATAAAAATATCTCAAAGGGAGAAAATATAATACTTGAATGTAGATTCGAAGTAGGTTCCAGAAAAAAAAGAAAGAAGTCAGTCATGCTGCTAAGTTTCCCTATGGAAATCCTTGCTca---------------attattgatcagcttttccatgtgccaaacactgttctaaagcattctac-gatattgccttatttaggtttcaca a score=9223 s hg19.chr6_ssto_hap7 4346152 177 + 4928567 acaccattgttatcatcatccttttacagaaaatgacaccaaagcacaa----gttaagtaacttgcccaagggctcacagctaaacgctgacagttacgattgaatccccagcagtcaggttccagagcccatgcttcttaaccggtacacatgatgctgtTAGAAATGAGATGGTTCAG s canFam2.chr12 5519248 178 + 75515492 acaacacctttattatcatccttttacagaaaataatgccaaggcacagagaggttaagtaacttgcccaaggtcacacagctgaaatttgacagtcaaaattgaatccttggcagcctggttcctgagcatac---tattaagcagtaagcatgctgCTATTAGAAATGAGATGGGGGAg a score=151969 s hg19.chr6_ssto_hap7 4346329 3072 + 4928567 AGACAGTGCAA----------------------CTTCTCTTAGGGAGAATTTAATATTTTCTTTTAGATTAGACTCTAGTACAATGCCAAGAACAGAAACTCCCTCACCAA-------ATAATTGCCCTCTCAACTTTATTGCCACCCTGTCATCCAAAGCAACTCCCAGACCCTAAGGAATGCAAGAAAGAAAGCATATGCAAAGCAATTTACCACCAGTGGTCATGTGCTGCCACCTTTCGTTATCTTCCCAGGACAGCACCTGTGCAGTTCTCCTTGGACAGTTCACTCAGGCCAAGGAACAGATTGTCAGGAAAGACATGTGAATTCTTTGCCCTTCCAGGCTGTTTTCACTTCATGTTAGGGGCTTCATGATACTGTTTTCCCAGAACTGACATAACTGA-TTGGTATAGCACTTGGGAGCTTATTCTTCCCATCCCTGAGCTTCTGTTT-CTCAGTTACGGTGAGGGTTGAAGGGAGTTATATGTTCCTCAGGGCAGCCTATACGAGACATAAACATTTTCACAAACAGTAAAATACACAACACACACACACACGCACAAAACACACAAGCAGCTTCCTTAACCATTTTGTAAGCAGATTATTAGAAAATAACTCTGCCTTCGTTTCTCACATATTTTGCACAAACCGATAGATGGAAAAAC-ATCATGTACCGCCAAGACCAGGGAATAAGAGCTCAGCTGGCAAATTAGGGGTTTTCCCTATTTCCCTCCCTAACGAGGTCAAGCTGTgttcaggttaaggcatgctgaatttgaaacgacaacccactcaagttgagatatccagAAACAAATACCATGAGTTAAGAAAGAAGCCACACTGATATAAAGAAATGAGATTTATTGCCTTGTGGGGGGAAGGGATGTGGTTGTGATAGGCAGGCCACTCTGGGATCCCTGGGATGCAAGCCCAGGGACAGCAGAGTCCCCAGGTGGGAAATCTACACACACAC-------------CCCAGGGATGTCCCAGAGACTTCTTCTACCCTAAGAGGAGATCCTGGGCAGGATGTGAGAAATCTGAGCATCCTCTGTTTGGATGGCCGAAGCTGCTGGCATCAAACTCTGGTCTGGAAGAATCAGTCTGGGGGAGAGACAGGGATGGAGGAAAGGCATCAGGGGATCCAtcctcctcctccttctcctcctcctcctcccccACAAAGGCCTTGCTCGCCCTGCCTGCACCACACCCTGCAGAAGTTGATCTCTCCTTGTTCCCAAATCATCTCCAAGCACCCTTCCTACAGCACCCCATGATTC-CTTTTTTCACTCAAAGCAATTCTTGTGACCC-ATAACTGTGTGTGTGTA------------ACTGGGTCCCCAACTGGGAAGATGTGCCCCCATGGTGCTGGATACAGGCCCCCACACCCAAGGGCCTGAGGATCGCTATATGTCCCCCCATGCCACAAAATAATCCTGA-CACATGCACGCATGCACCACTGTATCTGGCTCCCACAGGCTCACCCGCCCCCTCCAGAT-----GACATACCACCTGAGCAAGGCTTCCGGAAGTAGATGATGAGAACAATGCCCACGATGATGCCCAGCACACCCAGGCCAAAGGCCACGCCACACAGCACATTCTCCAGCAGATCTGAGGGCAGTGCGTTCCGGGGTACTGGAGGAAATGAGTGGC---TCAGCCTGGGGACCTAGTTAGGGAGCCTCCCACCCAGGGAAATGACGTGGGTGTCTGGGAT-----------------GACATGGGAGACTGGGATGGGCTTAGGGTAGGAATGGACT-AAACAAGGTACCAGTGGAGAAAGAAGCCTCCTCCCATGGATCTATCCCTTTTTGCCCCCAAAAGGAC-CAGAATTCCAGGGAGAAAGC-CTCACCCCAATAGGCAATTGCTGTGTAGCGGTCAATTTCGTGAGTCACAATGCAGGAGAAAATGTCAGAAGGTTCTGGTGTGAAGTTTAAGTAAGAAAAGGCCTGGAAGCTGAGTCCATCGACAGCTGAGACAAAAGTAGGCCCAAATCCTTCCACAGGGACGGAATGATGCTGCCAGTTCACTGTCAGCATGGGTGGGAAGAGATTACTGACAAAACAGACCAAAGTGTTGGGCTTGCCAAACTCCAGGGGCTTCAGCGTGAACACTTCAGCGATAGGAAACCCTGGTGGGGGGATTGAAGTGTAGGGGGAAAAAGAGACTAGTTTAGATGGTATCTCTGTGTTTGGAGGGGCCATGGCATATGGAGGGGAGGGCAGAGAAGAACACAGTGGG-TCAGGCTTTGGGAGACAGAGATGAGCGAGGAGC-TGGGCTCTGAAGGGAGGTCTTCTTCCAGGCAAGGACTGCAGCTAGACGTAGAAGCAGAGCCAGATCCAGGCTACTCTGGACCCCTCCACCATGACTTCCTTCAGCACTTCCTGTCTAGAGCTCACATTGATGTCTAACCATGCACTGTCTTCTCACTAAGACATAGTCACGTCATCAGATATTTCCACTCTTCCCATCCATCTTGCTGGGCATAGTAGCACAAGTGTTAATATTCAGTAGGTATCAGTTGGTACCTGTTGAattcatcacattcaatacatagttctgaatgcctactacatgctaggta-----ctTCGGCCCACCAAAAGAACACAGGGTGCAGACCAAGGCTGGTGGAAAAATTAAGGTGATGAAGAGAACCAGAAAGTATTTGAGATGGGGAGCTGGTATCAAGGGGAATTATTCAGTGTACAGATCAATGAGGTT---AATGCAGCCCTCCTCCCTTCACTCCCCAGAAAACTCCTGACCTCTGGACACCGGGATTTTCCCATCAAGTTTTGGCCCTATTTGCTGGATCATCCACTCGCAGAACTCTTTGTCAAATAAAATGGCAGGAGCATCTCCCTGTTCCTGAGCCCAGTCAGCAAATTCGGGCAGGCGAGGCACCCGAGTGTTCTGGGAAAAGTCGAAGAAGAAAAGCTGGTCCTCGTCGTAGGCCTCAGAGAGTCCCACACTGGGACTCCCATCCTGGCAGTACACTGTGTGCAGGAATGTGTGGTTTTGCAGGTCATCTGGCCACATTGGAGTAGGAGCTGCAAAGGACACAGGGTGAGGTTCAGGGAGGTGGGAGCCTTCTCCTCC-----AACTTAAAAAACA s canFam2.chr12 5519604 2983 + 75515492 AAAAAATGAAATGAGATGGGATAGAGGAGGTGCCAACTCCTAGG---AATTGGATCTTTCCCTT------AGATTCTGGTACAATGTGAAAAACAGAGACTCTCTGACCAATACCAAAATAATTTCACTCTTAACTTTAATGCCACCCCCTCCTCCAAAGTAACCCCCAGACCCTAAAGAAAGCAAGAAAAAAAGAGCATGCAAAGTAATTTACCACCAGTAGTCACGTGTCCCCTGCCCCCACTATCTGCTCAGGGCAGCACCACCATAGTTCTCCTTGGATGATCCACTCTGGCCAAAGAACAAATTGTTTGGAGGGACACATGAATT----GTCCCTTCAGGCTGTTTC-----------AGGAGCTTGAATATACGGTTTTCACAGAAACAACATGATTCAGTTAGAACAGCATTTGAAAGCTTATTTTTCCCATTCCTGACCTCCCATTTTCCCAGCTACAGTGAAGGTTGAAAGGAGTTATATATTTCCCAAGGCAGCTTATACTAGCCATAAACATCTTCACAAACAGTAAAATGAAAAAAA----------------ATATCCGCAATCAGCTTCCTCCACGGTTTTGTGAGCAGATTATCAGAAAATAGCTCTGCCTTCATTTTTCATGTATTTTGCACAAACGGAGAGGAGTAAAAGCCATTGTATGGTGCTGAGACCAGGGAACAGGAG-TCAACTGAGAAGCTAGGGGTTTTCCC-ATTTCCCTCCCTAATGAGGGCAAGCTGCATTCAAGTTAAAGCAAGTTGAACTTGAAATGACAACCCATGCAA---------------------------------------------------TATTAAGAAATAAGATTTATTGCCCTGAAGTGGGAAGGAATGTGGTTGTGATAAGTAAGCTGTTCTGGGTACCCCTGGGTGCAAGTCCAGGGACAGTAGAG-CCCCAGCTGAGAAACTTGTACACATCCTCACGCATACACTCCCAGAGGCGTCCTGGGGACTTCTGCTCTGAGAAAGGGAGATCCTGGGCAGGATGCCAGAAACGTGAGTTCCCACTGCATGCATGGTTGACCCTGCTGGCACCAGATTCTGGTCAGGAACTATCGATCTGAGG-AGAGAGAAGGATGGAGGAAAGCCATCAGGAGGACC-----------------------CCCCCTCCTCCACAAAGGCCT----CTCCCTGCCTGGTGCATATCCCATACAAGTTGATCTCTCTTTGGCCCCAAGTTATCTCCAAGCACCCCTCCTATAGTTCCCCATATCACTCCTCTCCCACTCAAAGCCATGCCTGTGATCCTATAACTGTGTGTATGTATGTATGTACGTAACTGGGATTCCAACCAGGAGGATGT----CCATGGTGCCG-ACACAGGCCTCC----------------------------------CTATACCACAGGATGACCTTGGGCATGCCCCCACATGCACCACTGTATGTGGCTCCCAT-GGTTTGCCCACCCACTCCAGACACCCCGATGTACCA--TGAGCAAGGCTTTCGGAAGTACACGATGAGGACTAAGCCAACAATGATGCCCAGCATACCCAGGCCAAAGGCTACACCACACAGCACATTCTCCAGAAGATCAGAGGGCAGCGCATCATGGGGCACTGGAGAAAAAGAGGAGCAAGTCATCCTGGAGCCTTGGTCGGTGAGTC-CCCACCCAGGGGAATGACTTGGGGGGCAGGGATTAAACAGAAGAAACAGAGGCATGAAAAATTGAAGTTG-CTCAGGGTGAGAATGGACTTAAGCAAAGTGCAAGTAGAGAAAGAAAGC-CCTCCCATGGGTCCATCCTTTTTTGTCCCCAAAAGAAAGCAGGCTTCCAAGGAGAAATTTCTCACCCCAATAGGCAATTGCCGTGTAGTTGTCAATCTCATGAGTCACCACGCAGGAGAAAAGATCAGAGGGTGCCGGTGTAAAGTTTAAGTAAGAAAAGGCCTGGAAGCTGAATCCATCAACAGCGGACACAAAAGTGGGCCCGATTCCTTCCACAGGGTCCAAGTGATGCCACCAGTTCACCGTCAATGTGGGTGGGAAGAGATTACTGATAAAACAGACCAGCATGTTGGGTTTGCCAAACTCCAGGGGCTTCAACGTGAACACGTCGACCATAGGAAACCCTGGTGGGAGGATTGAGGTGTGAGGGAAAGAAGTAACTAGTTTACATGGTACCCCTGAGTTTGGAAGGGATGTGGTATACAGAGGGGAGTGTAGAGACAGTGTCAGTGGGAATGGGCTTTGGAAGG-AGAGATGAGGGAGGAGCTTGGGCTCTGAC-GGAGGTCTTCTTCCAGGCAAGTACCAGACCTTGAC-TAGAGGCAGAGCTAGATCCAGGCTACTCTGGGACCCTCCATCGTGACTTCCTGCAGCACTTCCTGTCTACAGTTCACACCATCATCTAATCACATGCTATCTTCTCACTGAAGCACAGGCACATCATTAGATACTTCCTTTCTCCCCTTCCATCCTCCTGAGCATAGCAACACAAGCTCTAATATTCCGTAGGCATCAACTAGTCCCTATTGCattcattaaattcaataaacagttctgaacacctactatgtcctgagcacAAGTCTTTGTCCCACAACAAAAACAGAGG--GCAGACCATAGCTGGT---------------AAGGGGAGACCCAGACGACATTAGAGGAGGGGA-CTGGTGTGAAAGGGAATAATTCAGTGTACAGGTTGAGGAGGTTAAGAATGTAGCC--CCTCTCTCTGCCCCCCGAAACACCCCTGACCTCTAGACACAGGGATTTGCCCTTCAAGTTTTGGTCCTATTTCCTCAATCATAGCTTGGCAGAATGCTTTGTCAAAGGAAATGGTGGGCATATCTCCAGACTTCTGAGCCCAGTCAGCAAATTCAGGCAGGCGAGGCACTCGAGTGTTCTGGGAAAAGTTGAAGGAGAAAAGCTGATCCCCATCATAGGCTTCCAAGAGTCCGATGCTGGGACTCCAGTTCTGGCAGTACATCGTGTGCAAGAATGTGTGGTTTTGCAGTTCATCCCGCCATGCTAGAGTAGGAGCTGCAAAGGAAACAAGGTAAG--TCAGGAAGGTGGGAGTGTCCTCCTCCTCCTTAGCTTAGAAGACA a score=8418 s hg19.chr6_ssto_hap7 4349706 167 + 4928567 GCAAGGCCTGCTTAAGG----AGCGT-GGGCTGAGGTGAGACCCTTTCCTGTGTCTGTTATTTAGACTCCCCCTCCCAAAGGGGGTGAAGAACAAATTATGGCATCTCTCCAAGCTTCCCCTGCCTATAAAAAGGCCAGTTGGCAAAAGTAAAGAGTTCTACTTTCTAAAGT s canFam2.chr12 5522587 150 + 75515492 GCAAGGCCTGCTTCAGGCAGAGGGGTAGGATTGGGGTGTGACCCCTTCTTGTGTCTGTTATTTAGGCTCTCCCTCCCAATAAGGGTGAAGAAGAAATCACAGGATCTCTCCAAACTTCCCCTGCCCATAAAAAGGCCA----------------------ACTGTCTAAAGT a score=168521 s hg19.chr6_ssto_hap7 4350516 3812 + 4928567 taaaGTGACAGATTcagagtcactg---ttcattgtgtgtttgggggctgcacaaagacacctagccaaagaagcaagtgaa-----------agcctgcattctgctcaccatgccatacatcctggcatagggctgtatcctcccaaaggggattcctttgtctaattcataccaggccactgtattgactagagaaggccatgGATGGGTTTCTCACTCTTAGAAGGGA----AAGAGGAGGAATGGCTACAGCCTCCCCAAGCCATAGATGGGACTGCCTCCCACTATCCCCAGACACAAATGGTAAATTGGAAAACCTGTATCCAGACATTTCTTCAGCCACTTCATTGGCACCAAGCGTCTCTCAAAATGTCTTC-TGTTCCTTAACCTACCAGGCCTCCCAAAGACAGCAATGGGAGAAGTGACCCCATAACTGCATAAAATAATCCCTCTTCTTTGAAGCTCTTGGCAGGAATCGCTCAGCC------AGCAGGAAACCTTTAACCCAATAC-------CCAGAAAAACAGACATTTGGAGGAAGagggatcttccagattattcttccattctgccccatcctctacagagaaggaaactaagacac----------------ttttcaagaatcacaagataagttaatgatagaaagcagagtagaatcTTGAGTGGAGGAGTGAAAATAACATTCACTTTgttcaaatcccagctctaccactttccaatggtgtgaacttgcacaaataa--------ctctgagtctcattttctt----catttgtaaaatggagagaacaatctccgcttcaagagattgtcttaaatggaacatgcaaagcATCACTGATATCGTTT-ACCAACCACACATAGCAGCTGTCTTTCCCCACTCCCCTGTTGTTTCCACTGCCTCATAAGACTTCCCACCACTCACAAAGCACAGCGCTTTTCCTCACAAAGCTGA-----------GTGGGC---TCCCTAGGT---------TCAGGATGGAAGTAAATAGGA-GTACCATCTTACCTTCAGGGACGGCCCAGGAGTGGGGTAGCAGCCACAGAAGTGGTAACATCTGTAGCAGCGCAGCTCCTTGGTTCTGTTCATGACCCATACCTTCTTGCCACACAGTAGG-TAGGAGCTACCAACCCAGCCAACCCAGCTTCCCCAACTCCCTCCCCGAGAGGGTGGCCTTAGATCATGTTTTGCCAGATCATTTCCAATAGGTGCCCTTGTCATTTTGTCTAAACCAATCAGAGAAGCGTAGGGTTTAACATCATCAGTCACTGGGGAGACGCCTGGGGCCAGTAACCTCCT-GAAGACTTGGCTGTTTGACCAGGGCAGAGTATGGCATGTAACTGGGCTGGGAAGCCCAGTGGAGGAATGT-TGCTTCCTGGTGGAGTTCCCTCTTTGGTTTCAAGCTGTCAGCCTCAGTCTGTAAGCGA-CCAGCTGGCTCTTCAGAGCAGTGCCACCTCCTGGCAGAATGCTGCAATGGGGAACCGCATCTTCCCCAAGTAAACCCCCAGGGCTCTTCGGACCCTGCCTTCTCCTCCCTCCTGGC--TCTTCCTCTT----TCTCAAAAAAACTTATTCTCCTTCAGGCATTAGCTCTAattcatttggcagacatatattgaaaatacaagaaattctgggtgttgggcccagggctagaaatacaaagatgaata---ggcatagtctgccttcaaagagcttagagtctagt--gctgggggagggggccaagg----gataattacacaacaatgtaatgtattcaaataagaatgtgccaagtgttttggaagtcgcagtaattttatgaggatgcggaataggaggaacataatcaggcaggctcctaaga--cttgaaggaaaaacaatttggccagcagaacatgaaggaagagaaaaacacgccagggcaaagggtaggcagaagtacaaagatcacaggcaTCCAGAGGTCCT--CTTTGGAGAC-CCTGTGTACTAGTTGATATGAATGTTGTGAAGGTCGCTTG-GGTGTTCCTGTATAATAGGAGGTAATGGGGGGTAGAAGGATGTTGTGATAAGCTACAAATTCGGGCAAgggccagatcacgtgggccctgctacgccacaaggaggagcttgcttttacttagcagatgatagagatattaaaactggggaatga--caatcattttagcattttggaaaaaatgttctgattgatatttcaaacaatgaactggagcttttaaagaattgaggcaaaactgctgggcaagagtctat-----agcataccaagatgaacagttgcacata--tacacaccactc---ctgtagcaatacagcaataatttaaatgacagataataagagcctgaattaagtcataataagaggaggcggaggagatagaatatcaagataattaggaagtagaatctaaagggtttggctactgattagctgtgggagtgggaaggtggaggagtcaaagata--tctcagatttccagcatgggtggctgggtgggtggtcagggatggactgaattgaagcagaaaagaatgccatgggagcaggttt----acagagagaaagagcttgattttgtacatgttgaatttgaaatgccagtggaacagccagctgaaactgcatgggagcgcagtgaggcgtgtgggtatggaccccaggtatggtctga-agaccctgatttgagagtcatcagcacaaatgtcgaagcagaggccatgaataagatcacccaagtaaactgtgcagaaggagtgggaagtgaaacaaggacAAAAGCATGCATGGGCTCAAACCCCAAACCTCATACCAGTT---ATCcaggatccagtcaggagcatttaactactttatgtgcttcagactgaaagaatttaatatagagaattggttacaaaggtgttaaaagggcaagaagtacaaaAAAAAAAAAAAAAGGAGAGTCCTAGAAATGTACATTTTAAAAAAAGATTGCTATCTGGAAATCAGAAGCTGCCATCATCCCTGAGCTGGAATC----TGTAAATCTACTCATTGCCTTGTGAGAGACACTGTCATAGTCAGTTCC-AATCTACTAGAAAGGTGCCACCTCCTTCAAGGCTAGAATCCTTGAGAAGGTACT---TCTGCTCAGGAGGCTGGAGTCCTGAGTCTCCCATTCTTCCTGCTGCTACAGCTACAGCCAATAGCTACCAGCTATTGCCAGCCACCGACACTGT-TTAGAGgctgaagcaggatgcttctcagtttctcttgccttctgatctcccatcagtgcctcctactggcagaatcaaaaaggaagccagatgtccaggaaggctgggaaatacacacctggctgactcctaagctaagcagttcaaaacacagtagaggagggtgtgtgtgtcactgagacaaagataataacgagtacaCTGAAATACCCTGGTTTGTAAGAATCTGGTGGCACGaggaccatcca---------gagcactaagaaaagaccaaggtagaagcaga-tcagagaaataaaaaagaggtgtgccatgaaggagggcaaggtcagcatttttaaatgctactcaaaagtcaagaaaggattgaaaagtgtccttagatttggtgattatgagatggctgacaaatttattgagagcagtttcagtgttgtagtgggagtcaactccagattgtggtgggctgagaagtaagtgggaggtgaggaag-aaactgtcagtgtacatgct-tcaagtttgttagaca--aaagaaagagaaagacagaaggggtgggggaagaggCAGTGAGAAAGCTCTAATGTGGCAATCAAGTAATCTGAGAAATTAATATATGTGAATATTGTCCAACAGTGTTTCTGAGGCTTTCAAAATTCATAC s canFam2.chr12 5522769 3790 + 75515492 TAAAGCAACAAATTTGGAGTCACAAGGTTGGGTTGCCTGTttgcgtgttacatgagga-atctggccaaggaagtaattgaaagttgaaatctagcttgcactccgctcaccaagcaagcca-catggcacagggctgcatcctcccaaaaaagatacttttgtctaaatcacagaaggcCACTATGTTAACTTGTGAAGGGCTTCGATGGGTTCCCCCACCTTAGAAGGGAGGGTAAATTAAGGAATGGTCATGGCCTCCCCAAGCCACACATGACACTGCCCCATCTTACCCCCAGA-AAACATGGTTAGCTAAAAAACCAATCTCCAGGTTTCTCTTCAGCTGCTTCATCAGCACCAGACCTCTCTGAAAACCTCCTCATCTCCCTCAGCCCTCCAGCCCCTGCAATGTCAGGAGTGGGAGGA-----CCCAAAGTTGTAGGCAATAATATCTATCCTTTGGAATTCCTGGCAAGAATCTCCCCACACACAGGAGCAGGAAACTTTCTATCCAGTACTCAATATCtagaataatagatatttagaggaagaaggatctt-cagattattcatccattcca-cccgtcctttacaaggaaggaaactaaggaccaataaaagttaagagactttcaagaaccacaaggtgagttgatgacagagtgcagagcagatacctaaataggacagt-aacataatatttactttgttcaaatcccagctctgccactttccaactgcatgaatttgaatacattaccgaaagtctcttagtctcattttttttttccatttgtaaaatggatataataatctc--tttcaagagattgtttcgagtgcaatatataaagcacctctgacattgtttggcCATCCATCCATAGTTGATCTCTTTCCCAATTCTGCTATTGTTTCCACTACTCCATAATACTTCCTGCCACTTACAAAGCACAGGGCTTCAAAT-GCAAAGAAGACTTCAAATGCTCTGGGCAGTTCGCTAGGCTCTGACCTGTCAGGATTGAAGTAAAGGCGAGGTATTGTCATACCTTCAGGGGCGGTCCGGGAGTAGGGCAGCAGCCACAGGAGGTGTAACAGCCTTAGCAGTGCAGCTCCCTGCCTCTGCTCATGATCCATATCTTCACACCACACCATGGGCTAAGACCTACCAA-CCAGCTGACCCAGGGCCCCAAATTCCTTCCCC--------------AGATCATGTTCCACCAGCT-AGTTCCAATAGTTGCCTTTATCACTTGGT-TAAACCAATCACAGAAGTGTAGGGTTTAACATCATCAGTTGCTGGGGAGAGACACAGTGCCAGCAACCTCTTCTAAGACTTGGCTCTTTCACCAGGCCAGAGTCGGGTGTGTAACTGGGCTGGGAAG-ACAATGGAGGGATGTCTGCCTCCTGCTGGGGATCCCTCTGTAGTACCAAACCGTCAGCTTAAGCTGGTAACCTAGGCAATGGGCTCTTCAGAGCAGCACCACCTCCTGGCAGTTGGCTGCAGTGGGGAAGCTCCTCTTCCCACGGCAAACTCCCAGGGCTCTTCAGACCCCGCCTCCTCCTCCCTCCAGCCCTCCTTCCTCTTTTTCTCTCTGAGAGG-----TGTTCTTCGGGCATTAGCTCAATttcattctgcagaaatacatggaaaatttaataagtact-agtattgggtccagtgctagaaatacaaagatgaataaagggtat-tcctgctttcaaagagcttaaagtctagttggcggggtgggggagtcaatgaataaataattacacaacaatgtaatgt-ttccaacaagaatgtgctcagtgttttaaaAGT---ATTAACTTTATGAGGAT-----------GGAACATAATC---CAAGCTTCTGAGAATCTTGAAAGAAAAACAATTTGACCAGCAGAACCTGAAGGAAGAGAAAAGCATTCTAGGGCAAGGGCCAGGCGAATATGTGAAGG-CAAAGGCATTCAGAGCTCCTTCCCTTGGAGACATCTGTGTGGT--TGGATGTGAATGGTGTGGAGACTACTGATTGTGTCCCTGTTT-------GGTAGTAGTGCATGGAGGAGTGTCAAGATGAGCTGGAAATTTAAGCAAGAGCCAGATCACATAGGCCATGTTATAACACAAAGAGGGTCTGGCTTT--------------TAGAGGTATTAAAACTGAGGAGTGACCCAATTATTTTAA-ATTTTAGAAAAACTGGTCTT-CAAAAATTTCAAAGGATGGACTGGAGCTTAGAAAAAATTGAGCTAAAACTGCTGGTC-AGAGTCTATATTACATTACATCAAAATA---AGTTGCACACACCCACATACCACTCTTTTTTTAGCAAtatagcaataatttagttgagaattgataagaacctgaattaagtcatgaacagaggcaatggagggaatagaatattgagataattaggagacagaatctaaagggcttggctactgattagcc------------aagcagaggagtcaaggccaacactaagatttctagattagctggctgggtgggtagtcagtaa----------tgaaatagaaaagga-gccaaagaagcagatttgatgaagaagaggatgagtttagtgttgtacatgtagaatgtgagatgccagtgaaagaacca--------tgcaggaga----catgaggtatatgggtatagaactgaagcatgggctgagaaacctcaatttgggagtcatgagcacaaatgttgaagcagaagcagtggataagatcatgcaagtagactgtgcagacagaacaggaagtggCAT---GATGTAAGTCTGCATGGATTCCAACCCCAACCCTCTTACCAGTtatcatccaggatctagttgggaatatagaaccactctaggtcttccagactcagggaatttaatacaggaaatcagtcacaaaggtgttaaaagggcaagaagtacaaaaaggaaa--------AGGTGTCTGGAGG---------CACAAATAGAGGAATATCTAGAAATCAGAAGCTATTCTT-CCCCTGACATGGAATCCACGTCCATGCCTGCT-GTTGCCCTGGGACTGACACCATCATAGCTAGTTCTGGATCTGCTGAAAAGGTTCCATCTTCTTCAAGGCT-GGATAATTGAGAAGATGCTTTCTCTACCTAGAAGGCTTACGTCCGGAATCACCCATTCTTACTGCTGCCATATCTA-----------------------CCAGCAACTGTCACTCTGTTAGAAACTAAAGCAGGAAgcttctcagtttcccctgccttcatatcccttgccagtgcctcctattgggagaatataatgggaagccaaccagctaataagcctaagaagtacatgctttacagacgccttggccaagcagttcagaacacagtataggagggcaagcctggcactaaCAC-CAGAAAATAACCAGTACATGGACATGGACCAATTTGTAGAGATTTGGTGACACCAGGAGCATCCAGATAgccatgagagctaagagaagaacaaggaaggagcagattcagagaagc-----agaggtgttccatgaagaaggacaaggtcagcattataaaatgctacccagaagtcaaggaaggact-agaagtgtccttagatttggcaattatgaaatggttgacaaatgtattgagagcagtttcagtgttgtagtgggagttgactccagattgtggtgggctaagaagcaagtgggaggtgagggagaaaactgtcacagtatatgctgggaagtctaatagagaagaaaaagagagaaagacagaagggatgggggaagAAGCAGTGAGAAACATCTAATGTGGCAATTAAGTAACCTTAGAAATCAATCTATGTGAATATAATCCCTCAGTATCTC--AGACTTTCAAAATCCATAC a score=58872 s hg19.chr6_ssto_hap7 4354509 1426 + 4928567 CCTCTTTTGATAAACAAGTAATAGCAGCAGTAATAGCCAAAAACAAAAACAACTCTATGACCTCCTAGATATTCTGGAACAGCAATGTGTATATATGTG----------TGTGTGTCTGTGTGGTGG-----AGGCAGGGTGCCAGGGAAGGACTAGGGTTTGGAAATCATGGTA--ACCCTCCAGAAAACAAAAGAACA-TTTCCCAGTATCCCAACATTTATGCACTAACCCATCAGCGGTTCTGGCAGTGGGAAGATGCAGGCCCCT--GGACAGTAGAAAAGAAGTTTATGAGACTACCAG-------TGGGGAGACATATGGGACACAGCCACCTAGAGTCCTAAACcagggg--ttagcaaactttttctgtaaagggccagatggcaaatattttagacattgtgggctatcagatctctgtcatgagtactcaactgt-ggcacgaaagcctccatgcacaatatgtaaa---tgaaggagagtggctgtgttccTAGTTTCctcctagcttttcctcccacttcttgagcatctccttctcagtctccttcatagactccttcctttcagctactctttaaatac--------tggtgttccctggagtttttgtcctcaaccctctttttatttatggacactaaaattcaaatttcatgtaattttcatgtgtcacgaaatattcttcatttgcttttttttttccctaaccatttaaaaatgtgaagaccattcttagcttttaggccatttaaaaacaggtggtaggcaagattgtgctcacagcccatagtgtgctgaATG--ATGCTCTACACGTGGTCAGAATTGGTACGAAAGCCCCAAATTAAACCCACCCTTCAAAGAAGAACCTCAGTCCCCTTATTATTGGATTGGCAATCAGTTAACAAACACTTTGTG--CCAGTTACACCAGTCTATTTGGAAGGAGATCTGGGGAAGAACAGGAGAAACTAGACTGGGTGGAAGGGCATAGGAATAGGTACAGCAGACACTGCAATTTCTCTGGGTGAGAGGAACAAGGCAGAGGGGTCCAAGTTCTCCATAGGGAGCACAGTGTAGACAAGACCAAGGTGAGGACAAACATAACCATCCCTCACCAAGACTGTGGTGAGGGGTGGTTAACTCCATTCTCCCCTTCTATAATCTCAGTTTAAATGGTAACAAGTTCAAACACTTATAACTACTCTTCCCTCCATGTAATCCTTCCCCACCAGGACCTCCCAACTACCTCCATCATAAGTATCTCAGGAATAGTCTCTCATCAGTTTGGAAAGTAATAATTGTGGGCAAGAGATGAGCAAGGCAGCCAGTTCTGCTTTGCAGTAGTTCACTGTCTACTTT-GTCATTAGCTATGAATGCCTCTGAAAATAATGGCACAGCACCGGTAAATCCAGGAGGCTCTGGCTTTCTAACACTCAGCTCTGCCATCCCTTTCTAG s canFam2.chr12 5526559 1383 + 75515492 TCCCCTTTGAAAAATAAATATCAGCAGCAATAATAGCCAAAACCCAAAACAACCCCATGATCTCCTGGATATTCTGAAACACTAATGTGTATATATGTGCAAGCACATATATGAGTTTGTGTGGTGGGGGGCAGGCAGAGTGGCAAGGCTGGAGTAGGGTTTGGAAATCATTGTGTTACGCTCCGAAAAAC---AGAACATTTTCCCAATGTCCCACTCTTTGTAGACTTATCCATCAACAGTTCCTGCAGTGGGAAGATTCAGGCCTTTTAGGGCAGCAGAAAGGAAGTTTATGACATCATCAGGACCATAGGGGGAGACATAGTGCACACAGCCACCTAGAAT-CTAAGGCAGGAGAATCCGAAAAC---Ctctgtgaaggatcagataggaaatattctaggctttgtgagccattc-atctctgtgttatgcactcagctgcaagtgcacaaacagccacagacaacatgtcaatgttgaaagagcatggctatg---ctGGATTCCTCCCAGCTTCCTCCCACACTTCCTGGGCATCTC---CTCAGTCTCCTTCGTGGACCACTTTCTTTCAGTCATTCTGAAAACACCATTTAGGTGGTGTTCCCTGGAG-TTTTGTTCTTAACCTTTTTtttacttatggacactggaatttaaatttcatacaattttcatg---------acatcattctttcgcttttctt-----ccaaccatttaaaaatgtaaccatttctcttagttcttgggccacttaaa---agatggtgggctggattttgctc-catactatagttttctgaACACCATTCTCTGTATGTGGTCAGAATTGAGATGGGGACTCAAAATAAA---------CCAAAGAAGGGCTCCATTTCCCCT----TGGGGGTGGCTATTGATTAATGA-----TTGTGGCCCAGATAGGACAGACTGTTTGGAAGGAGGTCTGAGG--GGACATGAGGAAGAAGACTAGGTAGGAAGGC-TAGGAACAGGTAAAGCAGTCACTGCAACTACTCTGCGTGAGAGGAAAGAAATAAAAGGGTACAAGTTCTTCACA--GATTAGAGTGTAGACAAGATCAAGGTGAGCAGATATATAACCACCCATCATCAAGACTCTGGCCAGGTGTGGTCAACTCTTCTCTCC-------------CAG--TAAAGAGTAACAAGTTCAAACAGTTAGGACTATCCTTCCCTCTATGCAATCCT-----GTCAGTACTCTTCAACAAGTTCTGTAACAGATATCTCA--AAGAGTCTCTAATTAGTTTGCAGA--AGTAATTGCATGCGAGAG--GAGCAAGGCAATTGGTTCTGTATCCCAGTAACTCACTGTATATTTTGGTCATTAAATAGGAATGTCCCTGAAAATAATG-----GCACCTGTGAATCTAGTAGCTCATGGCTTTCTAACA--CAGCTCACTCATCCCTTTCTAG a score=23282 s hg19.chr6_ssto_hap7 4356276 646 + 4928567 CTCTATTTTTTTTCCCCTAGCAGAGTCAGATTTCTTGGAAAAGTCATGGGCAACTGTGGCCCCGCTCCCATTCTTGCCATTTAATCTTTTAACTCTCAACAATGCAATTGTtcaccaatacttttgtgttgccaaatcaaatgaactagtctctgcaacatctgacactgttggccataccccatctcctaaattggtcaaatttctggcatccctgatggcactctctcctag--ttttccctcctacttttctggcgtccccttttcagtc-cctttg-ggactcctttctttcagcaaccctttaagtattggtgttccctggagttttgtcctcaacctttactcttcttagactatacacttgccctggatggtcctctcatttactcccacatgccttctgttaccacccatttgctaatgtcttccaagcttacctcttcagctcagatcttgctctgagttccacactacccatat-ctgaaccacttctggtcaaatccacttggatgCTATGCAATAGCAGTTTTTTGTTTTTGTTTTTTTTTTaaatatggaacgcttcatgaatttgcatgtTCTTAAACTGTATTCTTCACAATAGCGTTCCTCAAGAAA---TAAAAAAAGTAAGTTTGATGATAGCAAT s canFam2.chr12 5527942 547 + 75515492 CCCCATTTATTTT-TCCTAGAAG-GCCAAATTTCCTGAAAAGGGCATGGGTTTCCATATTTCCATTTTTATACTTGCCATTT-ATGCTGTAACTCTCAACAATGAGACTGTTCATCAATATTTTTGAGTTGTTAAATCAAAtgaac---tctttgcaacatttgacactgttggccatgccctccttcctaaaatggcctattttttggcatc----atg--aatctctcctagtctttttgctcctacttctttggcgtcctcttctctgtcttctttgtggactcctttctt--aacagc-----------tggtgttccctggagttttgtcctcaaccttttctcttct-------cacatttgtcctggatgg------------------catgccttcagatgcctcctatttgctgatgtcttccaaatttactccttgagctcagttctttccctgaatttcataccacccatatactcaactgcctttcaacatctccacttgacctcc-----acagcagt----------------------------------------------------tctcaaactGTATTCTCCACAAAAGTGTCCCTCAAGAAATTTTTTGGACTGTAAACTTGATAGTAGCAAt a score=35173 s hg19.chr6_ssto_hap7 4356924 753 + 4928567 TTTATTTTTGAATTTATTTCCACATAGACATAATGCAACATCAAACACatttatataatattttttattatgtaacaatttattatatttaataaGTCTATTT--AttgcaagcaatagaaaccaattctggctaacttacattttaaaaatgaggatttattggaaagatactgatctaactcatgaaatGAAAGTAATAGTTGAATAAGCTAGCCTCAGGTAGAATAGCCACAGGGACCTTAGAAGCAGGGGTTGAGTTGCCATTAA-TATG-CTCACCTGCAAAGGCCTCCTGCCTCTTTATCTTTCAAGTTTTGCTTTGCTGGGAGAGCCTCTCTCACTGGCTCAGCTTGTATTAGGTGTGTACCACTGGATTCATTGGTTGTGGCCAGGTACAGTATTACCTCTATGGATTAGAGCTATTCCTAGAGAAGGGAGAATCAT-ATGAA-AAGTAACCACCTCAATACAGCTATTTTCAACATATGGCATCTcagacaattgtatgagatcatctgaggcataaacataaggttaaatctgtgtattaatgctcaaacagcatttc----ctaactactcaggtgacatatgtcatctgcttgatgatctctggtcggtcacttgtcttatcacatattcaaattacatttatcatgtgattcaatattgatttattaat--ttaaaattatatattccacga----atttcctttgaatctctgactaaaa---AGGTTtttttaattttactttgaaaagctccaagc s canFam2.chr12 5528684 755 + 75515492 tttatttttaaatttaCCTCAACACAGAGGTAATAAGATGCCAAACAC------ATAATA-ATCTCATTATGTAATCATTTATTATATTGAATAAAACTCTTCGAGATGTAGGCAATAGACACCAATTCTGGCTAACTTA-ACTTTTAAAATGGCAATTTACTGGAAGGATACTGAGCTAAATTCATAAATCAAAG--AGAAATGGATAGTCTAGCCTCAGAAAGGAAAGCCTCAGGGGTCTAGCAGCAAAGAGCTGAGCTGCTGTTAATTACGCCTCACCCTTAAAGACCTCCAGCCAC--CATCTCCCAAGTTTCACATTGCTGGGagagatgatctgattggctcagcttgtatta-gtgtgtatctctggatcaattagctgtggccaggCACAATATCACCCCTATGTATCACAGTTATTCCCAGAGAAGGGAGAATCATCATGAACCAAAAACCACCTCAATAC-GCTATCTTCAACAGATGACATGCTGGACAATTGCATGACATCATCTGAGACATTAACACAAGGTTAAATCTGTGTATTAATGCTCAGATAGCATTTTCCAACTAACTGCCTGAGTGATATATGTCTTCCACT---TGATCTCTGGTCTGTCACAAGTCTTGGCACAAATTCGAAACATACTCATAATATGATTCAGTGTTGACTTAGTAATAATAAAAATTTTACATTCCACTAATTGATTTCTTTTAGATCTATGACTAAAATATATAtatttttaattttatggtgaaaaatttcaaac a score=12233 s hg19.chr6_ssto_hap7 4357677 382 + 4928567 acacacagaagagaagaatctaataaa-ctccaatgtactctcatgaatgtcaacaattttcaacatttaacattcttccattcttgtttcatctattgttctgca--------------------------------------------------------ttttttggagtattttaaacaaattctgtcattacatttcaccagtaaatacttttaggcatatctataatagataataacctttcccttaacataactataatgccatcaccacaaccaacaaaattaaa---aattacttaacttcatTTGACCCAATCTGT--TCATTTCT-CCTAGTTATC-TCAAAAAtgtgtaagagaatgaagttttaaatgaaaagcagtgtcttataattttcaaaccgtgccATTAGTTTAAAAAAATTGGTGAGTTTTCTATT s canFam2.chr12 5529638 392 + 75515492 acaaacataaaag-agaatataataaatcctcattttactctcatgagcttcaac---------cttctaaaactcttccattcttgtttcatctattctgttccatgtcctttttatctattctgttccatgtccttttttttttttttttttttcttttcttttctgggctattttaaacaaattctgccattatatttc-tcag-------------------------------ataacttttcttttaacagaa-tacaatactattaccacaaccaaccaaattaaaaacaattgtttaatttcatttaaaccagtctgtgctcatttttccCCAGTGATCTTCAAAAATGTCT---------AAATTCTAAATGAAAAGCAGTGTGTTATGATTTCCAAAC--TGCATTCATTTCAAAAGTATTGACAAGTTTTTTCTT a score=36352 s hg19.chr6_ssto_hap7 4358059 931 + 4928567 TTATGTTTCATAAG---CTATTGATGGTTCAATAATGAATTCTAATTAGGTATTCCATAGGCAAATAAAGT-TAGCAATTGTTACTCTGAATgtatctccatctcaaga-ttacaagagtacactcatcactttcccttcccaatatattccaactcctctcttatatttaagacttcagtgaataacaaga-tgtc--------cacccgagctacaaa--tgtgggtcatcgttgatgaccccatcttcctcaaaccttcccattcaatt--------gtcctaacaattctacctttctaatagctcttgaatcttcctttcttttccttccattcctactggtccaggccttcaatggttggttttcact------gattattgcaactttctttataattggtctctctctctccaatcttattattttccacagtgctgccagaaggatatttttattatgcttagttgatcatattatacttctgcatgaaaaccttccaTGATTGTTAATGATCTACTTTCCTTGTCATGACCCATAATGACCTGAAGtctactt-acctacttctatatgtcttttcaggtgaaatctcactcctctcaggaagccttccttgaacccagagttgagattaatagcctcttcagtacgtttccaaagcaccctgtgttggccattatcactgttttaattgtattattctcttccatttatatgtctgtttcatagtcacctcatctctactgcaaggtccttaggggagggtgtactatatatatatatatc------------tccaccaAGAGG----CCCACTAAGTGACCTTTCACTCGATGAACAAATGGGCTACCAGTCTCTGAAGGTGCTGAACTGAGAATGGAAGAGCCTTCAGGTATTAGATG-ATGATGGATTGTCCCTTCTAACAGATGTTTCAAAGGTAAATCTTATCAGGTTTATCTATAAGCCAt s canFam2.chr12 5530253 925 + 75515492 TTAGGTCTCAAAAACCTCTGTTGATGGTTCAATAAAGAATTCTA------------ATAGGCAAATGAAGTCTAGCAATTACAATCTTGAATACCCTTCcatctcaaaatttacaaaactaagctcattaccct-ccttcccaacaagttccaactcc-----tatattcaagacctcagtaaataacttgactatccaatcaatcatctaagccacaaatctatgagtcaaccttgaccacttcatcttcctcaaatcttctcatccaatgtttagcaagtcctatcaattctaccttgttaatatctcttgcatctgtc-ctcttttcttcccattcccactggctcaggccttcattgatttgtttgcttttccctggattactttaactttcttc-ttcttga----tctgtctccattcttattttct-----agtgctgccaaaggaatctttttattatgcatatttcatcacatcatactttggtacaaaaaccttcaatgattG----TAATCTGC-TTCCTTAGTATGATCCTTAATGACCTGAACTCCATTTAACCTATGTCTGTATGTCCTTTGAGATGAAATCTCACTTCCCTCAGGAAGCCT---TGGAACCTGGAACAGGGATTAGTGGCTTCTTCTGTATGCTGCCACAGCTCCCTGTGCCTGCCATTACCATCATTTTTCTTGTACTACTCTC-----TCTATATATGTGCTTCACAGTCATCTCACCCTCACTGCAAGATCCTTAAGGAACCATGTCCTAT-TCTTTTTTTTTCACACTCTTAGCATCCACCAAGAAGATACACCAACAAGTAACTGTTCACTGGATGAATGTGTGGT------GTTACTGAAGATGATGAAACCGAGACTAAAGAGCCCTCAAGCATTAGATGAATGATAGACAATCCCTTCAAACAG-----TCAACAGTAGGTCTTACCAGTCATGCCTATAGGCTAC a score=22147 s hg19.chr6_ssto_hap7 4359300 460 + 4928567 TCTATGAGCCATTTTACACCTCCACAGCCTTCCCTATATACTCTAC---------TACCCTTCCAATTCCATTCTAGGCCCTTCCCAAGCTCCTTGCCAACTACCATTTTCTTCCTACTCCCTGCCACCTCCTGTTTCAGAGAGCAAACCTAGCCATCCAGCTCCCACATTTACTCTTATTTCTACCTCAGTACATTTCTCCATACCC--------ATATTCATCCTCCCTTTTAGTGACATTACTATGATGCAGCaatccttacaactactctacaaggttataatttattatccccattatataaacaagaaaactgggactcagaaagg------------ttcatttatttagcaaatatttattggccaccttctg--tgtctagcagtatgctctgtatcagatacctgccatcatcacacttaaagtctaatgaaaataaagagacattaaacaag--aaaacatacaaatttataAACTAAAAGG s canFam2.chr12 5531178 477 + 75515492 CCTGCAAATACTTT--CACCTCCACTGCCTTCCCTGTGCAACCCACCATTCTCCACACTCTTCCCATTCCATTCTAGGTCCTTCCCAAGCTACATGCCAACTGCCATTTTCTTCCTACTCCCTTCCACCTCCTGTTTCAGAGAGTGAACCTAGTCATCCATCTCC--CATTTACCCTCATTCCCAGCTCA--ATATCTCTTCACATCCACGAATGAATGTTCATTCTTTCTTTTAGCTACTTTATTAGGATGTAGCAACTCTGTCAA-----ctacaaggttggaatttattattcca--tatataaataagaaaaccatggctcaaagaggttTGTTTGTTTatttatttatttagcaagtatgtattgaccaccttctatctgcctggcaggatgctggacaccagacacctaccatcatcacacttataatctagtgaaaat--agagatattaaacaaatctaaaaatgcaaa-ttataaaaggaaggg a score=15310 s hg19.chr6_ssto_hap7 4361818 331 + 4928567 aattcagaagtccataaacttggatggaataaaaaaaagtcaactttattttcaaaaaactctcactgaaatctaattttatgaatgtagaaaataaatctttgtagtaccagccagcagctgtaacactgtcatcaatagaaaacaccatcaattaatattttcatatcacattatagttgttacagacatcttaaaatatcacttacaattatgggagctgttaaacttgccaaaaaatcatgctttttaatgtattagtaaagaaacac-tgtattGTATTAATACAGAAACACATACTACTAGATCATCACACGTTTCTTTGAATATA s canFam2.chr12 5532535 308 + 75515492 aattcaggggtc-atgaacgtggatggaattttttaaagtcacttttatttccaataacatcaaactgaaatttaagtttaggaatgtagaaagcaaatctttgtagtactagc-agtacctgcaatgttttcatcaatagaaa------tcaattaatattttcatgtcacat----------acagatatctcaaaatatcTCT-ATAATTTAATAagttgttagacttgccaataaatcat-----tttatttgttacttaagaaccacatgtattatattaacatggaagcacatattactggatcatcacacacttctttaaacata a score=23269 s hg19.chr6_ssto_hap7 4362411 517 + 4928567 ATTTTGATAACTATAGTTtatattttattttatgcatttacaaat---attatcagacaagatccaaaggcttcaccaaactgccaaaaaagctaatggcacataaaaagcttaaggagtcctgATTTAATCAGTCATTCAATGAACATGACATCcttcctggaaccatctcctgttctagcttcctcacattatgttgctctgcttctcctt--------gagatcttccattggttccacttcctattcttgcttcctgtatgaagatgtaacccaaagctcaatccttcaccc-----taaattgt-ttttataccccctcttttacaaacctcagctaccttcgtggctgattcaaacatcacctcaaaggtgactctcaaatctgcttttcctaatcttttttctctaacttcaatcttggatcttaaactccctgctGTGCCTAGTAAACAGAATAATATGCCACccagagtcag-----ctgggttcaaatcccagttc--tgctacttactaaaggtgtgaccttaggtaaat s canFam2.chr12 5532843 524 + 75515492 attctgataattatg-----tgttttattt-atacgtttacaaatggtattgtcaaacaaggtcctaaggctctagcagactgtcaaagaagtccatggcaca-aacaagcacaac---tcctgATT-AGTCATTTATTCAACAAACATGAAGCCCTTACTGAGGCCTTGTCTTGTTCTGGCATCTTCATATTATGTAATTTTGCTTTTCTTTCTTGTTTAATACTCTTCCATTGGTTCTACTTCCTATTCT-GTTCCCTGAATAAGGATCTAACCCAAAGTTCAATCTTCGACTCAAAACTAAATTCTATTTTATACTTCCT----TATAAATCTCATCTACCTGCATGACTGAATCAAACATCAATTCAAAGATGACTCCCAAATCTACCTCCCCTGATCTTTTTTCTC-AACTTTAGTCCTAGATCTTAAACTACCTGCTGTGTTTAGCAACCAGAAAAACAGATCATCCATGGGcagactacttgggttcacatcccagcttaagatcacttactaaaagtgtgaccacaagtaaat a score=5394 s hg19.chr6_ssto_hap7 4363611 92 + 4928567 gtcctttgcttctgttgtttcatttgaaaactgagggtgataatattagtattgactttatagggttataagga-----ttaaaagagttactacat s canFam2.chr12 5533375 97 + 75515492 atctattgcttcaattgcttcatttgaaaaatggggatgataataatagcatctacttcataaggttataagaaaggaattaaaagagttaatacat a score=23992 s hg19.chr6_ssto_hap7 4363703 582 + 4928567 gtactcattgcagtacctgacacattttaactactcaataaatgttTTGTATCACCAATCACATCTCCTTCCAACCCCGACATTTTAATTTGATGTTTATTAACATGGACGGTGCCAGCCACTG-------GAagacagagtttctatctaacaacataattctgatcaagtcattagtcaaaaaatttcagtggttccccactgattccaaacttaacagcactggaaaccttctataatgtgttctctaatataaatttacctccca-ttttctcttctcctgctctacttcttgtagcttatgt-----tctggccagactggactAGACTACTCTCTGTGACAATAACCTGTGCTGTTCTATGTCTGTCTTTCCTCACATAATTCTAATGTCTCAGGT------TTGAAGGCAATAATTTTGT-CTATGATTATTCCCC------TATACATGGCACCCCATAAAACATACACATTTCAATCTTACCTAAGTCACATACTTACTTACACATCAATTCACCTCCATATTTGCTCAatttgtgagaacctaatattggccagatactgtgctaggacctagggatatt------aaaaaaaaaaaaaaaagc s canFam2.chr12 5533888 596 + 75515492 gcacttataacagccccaaacacatttcaagtattcaacaaatgtgagctatcaCCGGTCTCATCTCCTTTCAACCC-GACATTTGTATTCGGTGTTTATTAACAGGTATCATGCTAGCTACTGCGAATATGAAGACAGGGTTCTTATCTAACGACATAACATGGGTCAAGGAATTGCTCAAA---------TGACTCCCCAGCTAGTCCAAGCTTAATGGCACTAGAAATCTTTT-TACAACACTGCCTCAGATAAATTTATCTTCCAATCTTCTCTTCTCTTGCTTTACCTCTTATGGCTTATATCCTATTCTGGCCAGACTGGAGTGCTCTGCTCTCCGTGAAGATGGCCTGTGCTGTTCTGCTTCTGTCTTTCCTCACACCATTCCAATGTCTCAATTATATACTTGACAGAAATGATGACTTACAATGATTATTTCCCCAATACTATGAATGATGCCCCATAAA---CATACATTACAATTTCATCTAAGTCACATACTTAAGTattcat----tcccttcaacatttgctcactttgtgagcacctcacattgaccagttactctgccaagagctgtgaatattttttttaaaaagaatacaatatgg a score=26941 s hg19.chr6_ssto_hap7 4364285 519 + 4928567 aaagcaagaaaaagaatgcataatggccctgctctcaaaatcaaggtctagtactagagagaaacatgtaatcacataaatgccattcactgtggaaagtaaaatcataaggggaagggacaccaaagaatgagcagttagctcaacttgaacagtaacattaagcttttcaga-gatgttatttgggcgtacatagattggggaaaagtctactccatatagaaagtgcacatgtgtaaaacacagaggcatgaaacaaaatgatgtgtctgggaaacagttcaatacagctggaatatagggcccaagaggaagtggttagacatgaggctggaaagctaggcagactgttttggcaaacataggaatttggactttatcacatagccaataaggaat-aacacagagttttaaaaagagc-tatggccagggctatattttggaaagctctctcctggcagtattgtgGCAGAGGCAGAGAGGAAAGTCTAAAGcagcactgtccaacagaacttcttg s canFam2.chr12 5534657 505 + 75515492 caaacaacaacaacaa--caatatgaccgtgttctcaagatcaaagtctagtaat-----gaaacatgtaatcacataaacaccactcattatgaaaggtgcaatcataaaaggaagggacaccaaggaatgagcagtcagctcaatttgggaggcaaaagtaggctttttagatgatggatttggggctttgattgattggagaa--gtttattccgtataagagagcagtatgtgtaaaatacagaggtataaaccaaaatggtctgtctggggaacagttcattatggctggaacatagggcccaagggaaagtggccacacac--------aaaactagacaggactttctggcaagcataggcatttgggctttatcacacaggcaataaggaattaatacaggatttaagcagtagcatatggccagagctgtgtttcagaaagctcagtcctggcagtattgtggcagaggcagggaagaaaatctaaagcagtactgttgaatagaactttctg a score=22106 s hg19.chr6_ssto_hap7 4365112 630 + 4928567 caatgacacaaatgttcaataatctgtgctttcccatatgacagccactagtcacatgtggctactgagaacttaaaatgtggctagtg-tattgagacactaaatttaaaattgtattaatttaaatccaaatagc--catgtgtctagC-------------------------------------AAATAATTTAGGAGACTGTTGGTATAGCTCAGGTGATAGAATTAGGACAGAAGGGTGAGTTGATGGATAGTTAAGAGGCAAAATTATGAGTCT---------------GTAAgggtgtgagaaaaggaaatcaagaacaggctcccagattacagactttgtggttaaacagccaccattactcaggacaacagaagagaaagagcaggtctagagtgtatagtgatttcatcaattttgaacatact--ggtgtctgagagttatcccagtgggaatatttagtagaaagtttagcttaga-gagctgtctgaactaaagattcag-----------------acttcagaggctttgagccatggagtcagattacctagagaagttgaacaaaattagaagcaaac------aagaatcacagcaaatatca---acacataaaaaggggctaaggaagaaaaatctactgagactggagaggaacagttacacaaataggaaaagaaacaagtgagagtggt s canFam2.chr12 5535162 680 + 75515492 caataatggaaatgttctatcactcctgctgtccaatatgacagccactaaccacatgtggctaatgagaacttgaaatgtgactagtgctactgaggaact----tcagaatt----taatattaatttaaatagcaacatgcgcctagtggccactatactggacaatacagctttagagagagggaaatcagttgggaagctgttgatgtagctcaggtgataggactatgacagaatg-tgattcagtaaatacttaagaggcaaaatagtaagttttgtgggtataaagttgtgtgtgtgtgggggaag-aacccaagaatgggttcctagattccaggctttgtgactgaatagctgcaattaaccaaggtaata------cagaagcagatctagcatgcatag--actgcatcaattttaaactggtttaagtgcccgagagttaatcaagaggtaatatttagttccaagtttaactccgacaaatcttttgaacttaaggctcagcatgtgtaaagacacacgtttaagaggcttagagccactgagtgagatta----gagaagatgaacagaactagaagcaaactaaggcaaaaatcctgacaaacatcatcaacccattagaagaagctagagtccacaaa------------agaaatgagcagttggacaagcaggaaaagaaacaggtgagaatggc a score=215425 s hg19.chr6_ssto_hap7 4365742 4820 + 4928567 atagaagtcaagggtagagagaatgtcaggaaggaaacatgatcaaatgtcgaatgcctcagaggtcaaataaagtgagaactgtaaagtgcttcctgactttgccagttaggaggttcttggtgacatctgccagaaaagttttggtggtagcagcctgacagaggtagcttgaagagtggggatggggaaagagaatgtgacaaagaattgagatagtaaggataatttcaatttcaggtcttggctgtgcaaggaagccgagagacatgagTCTCTAAGAGGGCACGATATTGAGAGGGTTGTTATCTTTCTGTCAGCGGGGAAACCAA-----GAGAAAAGTTTAAAAAGGTCAAAAGGGGGAGAAGGGAAGACAGCTTCCGGGTAACAGA-GAAGGTTGACCAGGTCAATAGTAAAGGA-TTTCCTCAAACCGAAGGGAGGACCTCTAGTGAAATGAGAAAGGAATACACAATTGACCCAGTTTGCAGGTGGGAAATGGGAAGCC---AGTTCT---GCAAATTGGCCTTTCTGTTCTGTGAAGTGCCATCTGTCGGTGAGGA---GAGATTAGGGTCTGCAGCGTGAAAATCTGGACC-ATACTCTGGGTAATCAAGGGAGAGGTTATCGGCTAATGACAAATTAAAGGCTTACTTTTTAGCTGGCAACTGAATCACCATAACATTTTATGTTACCAGTTCCAAAATTTTGGGGGGAATTCACTCAAGCTTGGGAGAGGAGAGATCATAACTTTAAGAGTATAAGAGGTTTAAACGG--TCCACTACGAAATAAATAGAGAAGGAAAAGTTATCAGCTGG---TAAATATCGTAGAAGGTAGAGCGGTCCAGGGACTCACAGGTCTCACTAAAGAAA-------AGTCTAGCGTAGGTTCACGGCACG-GAGAGATTTTAAGGCTGCCTAAGACTAAA--GCCAAATACGAAGTCCACATCTGCGGTCCGCACCTTATCTCTC-CGCGCGGCAGGCGCGACGAGGGCGAGAAACTCCCTCTCCAGTGGTCGCACCACACGACACCAGGGAAGGGGCCCCTCTCTCCAGACCCTCATATCTCCAGGTCCAGGCCCCATTTTCCTCCGCTGACA---GCTCAGCAGCGTGCGCTTCCGCTGGATTCAGGCCAGGACCAGCGAAGCCGCACCTTACACCCACCGAGGAGGAAACAAGCCTGGCCACCCGAGGCTACCCCGCTAGGCCGCGGGTAGTGGGGGAGGGGG---CGCTGAGGCAGGAGGTCAGCACCCGGGCGCGGGCTCCCGCCCCACGAAAAGCGCGCGCTCCAAGCCCCGCCGCCGGAGATGCGGTTCCGGTCCGGACGCCTGCGCACTACGGCTCTCCCC-GCAGCCTCTGGCCCTCCTTCCCCCTCCCCCAGTCAGGGCGCACCCTTGCGCCTGCGCTGTGTGTGTTCCTGGTCTGCGGCAGCCATGCTGAACTCGTATGGAGAGGCGAGTGGGGGGGACAGAGTCCAGGACCGCGGGATAGGAAGCTGGGGATATGGACAAGCAGCAGCGTTATAGCGCTCTGGGTTTCGGGACATAGGCCTGGGCCATGCGGCCCCCTTGGCCCCTTGGCGCGACCCCCAGGAACGTTCGGAAAGCTGGTCCTCGTGGCTGGGGGAAAGGCGGGGGGTGGGGGGGAAGCGGGCACGTGACCCCGGTCAGCCAATCTGGGTGCTGCTGACGTGGCCGCGCGGCCCCGATGCTCTCCCCACCCCCCCAGCCCGTTCGGGAAGGGAGGGGCTGGGGGCTACGCCCCCTCCCCCAGCACGGCTTCGTTTTCTGGGGGGGGGTTGACACCCCGGATTACAT---------------ACCCCGTACCAAGCCGAGGGCAACTTTGGAGGCCCCCTGGAAGGCTTTAGGATCCAGGTGAGAAGGGGCCCTT-GTGGGGCGGAGAT-------GTCAGTCAAGTGCTTAACCAATGGTGGGGAGTCCGGGAGGGGGATTCTTGGGGTTCAGGAAAGAATCCTGAGAGTGGGAAGATTTGTCCTTCAAACCTTTTACAGCCAATGGGAGCGTGGAGGGGGGGCGAGCGGGAGAGGGCCAT---GGGGGGGGAGGGGAATGGCCAGCCTCATGCCTCCGTACCCATTGGAGGGCAAAGGGGTTAGGGGGCGGTGTGGCCCCCCCTATTCCATTCGTCCCCTGGGGGTACAGCAGCCGGGAGCCAGGTGAGAAGGGATCCATCGGCGGCCG--AGGGAGGGGTGACCTGGCGGTGGGCTGAGGAGTGGTGGCTGTGGCC------CCTACCCGTGGATGTGAATGCTTTAGGAGTTGGCCACCCATGTTGTGAACTGAGGTTGTTCCCAGGCGCCAACTTCCTTTCTCCCCAGAGCCTCTGGAGGGAGCATTGCTGTGCGCCCTTTGTGTCCGCGGTAGGGGAGCTCCAGTCGTCACACCGCAGGCTGGAGGTTACGCTTCGAGTCGCTTACCGAATTTGTGTGCATTCACGTGGACACGGCCTGTGGGGCCTT------------TTGCCCCTGTAGGGTCTT----TACTGAGCACGTGTCTACTCCAGGCTGGG--GTGCTTACAAGCTGAAAGCTTGAGGTCTGCTTAGGAACAGAAACCAGGCCCAAGGTGGGTGCTGGCAGTAGGGGGTCTAGACAGCATGGTCTG---AGATGCGAGGGAGGCTCGGGACCTGGAATGATTTCACAGCTCCCAAGGTTTCGGGTTTCTCCAGGGTGGCCTCTTCCATCGCCTCCCTCATCCCCT-CCCCCAGTCCTGAACAGTTCTCTCCTTGTGTACTGCGGGGGAGGGAACGGAAAGGAGGAAAGAGTTACTTTCCCAAATTACTGAGTAGCAG-TAGCCTCCCTGGTGACTCAT----------GTGGGGGAAGGGAGGATAG--AGGATCGGGAGGCAGTGATTTTCCGGAATGCAGGGAA-TAAACGAGAGCAATGTCTGGCTGCCCTT----TTCCTAAGGCCTAGTATTTTCTCAGCCTCCTAAGTTTTTATTCCATGGCCGG-CCCCCTGATGGGCCTCTGTCCTGGCCTGCAGAGCCCC-GGTGGAGAAAAGCAGATTTGGGAGGTTGGGCCGCTA------------GGGGGAGGGGAAAAGGCCTCTGCAAAGTTGCTGTGTCATTGCCCTCCATGCTGCAGCCACCCAGACGGGGCCGCTTGTACTTTTGGGGGCCAGGGCCTGATCCCTG-------------------GCTGGGGGAAGGGGACTCTGCTCTCCTGACGCTCATTTTCCCCCGCCCTCCCGGGGTTTGCCCTACTCGGGGGGTC-AGAAGACAGGAGATTGGCGGCCATTTTAGACGCAGTAACCGAGGTTGGAGTTGAAGGGCTACTGCAGAGGAGGGAGGGTGGCGTGGTTGCAGCTCAAGGACCTAGGCCCTTACGAGCCCTTCCCGGGC-GAGGGGGAATCTTACCGTATATTTGTTCACCTACGTTGATTATTTTTCCCAGATACGTACACAAGTTTGTTTTCT-CCCTGGTAGCGAAGAAAGGGGAAACGGGGGAGGGGACGCCCCACCAAAGCCCAGGTTTTCTCGGGTGGGGGAGATCCTTTCACTCTCTTGTAAGGGGGCGGGGAC--------GGCCCCAGAGAT-GCTCTGGAGATCCTGACTCTGGGCTCTGG---TTGATTC--ACAGAGTCTGCACCCTTATTTAGATAACCAAGTTAGGAGGAAGACTTAA-GAGTAAGTTGGGGGGAGGGGGCGAAACTGAGCTCCCAAAATGGCTCCTGCCCCTCCTCggaggcggacggcc--ggggggaggggaggagggg------aggagggggagggCTAGTCTGAGCCGCAGCCGCCGCCTCCTCCGCTCGCCCTCCTCCCTGGCGCTGACCGATGGACCAGCCGCTCCGTGGGGAGGACTCCGGACCCTGGTGGGGGGGCGGGGGGGTTCTTTCGCCCCCGTGGCGGAGGGCCCCTGAGA-GGCGGATACGGGTGTGCCTTTGGGGGTGATGTGGCGTGTGG----GGGGAAAGGTCCGAGCTCGCCTGGAGGGGGAGGGTTTTTCCCTTAAGTCATCCCTCCCAGGACTTGCTTTTTCTGCTCTGAGCCGGACGCCGGAATGGAGTTTGAGGAAGAGGTGAGGTGTGTTGCATTGTATAGGGTAGATGGATGCGTTTGGAGATTTTAATCCCACTTTTAGGGTTGCCGAGGATTTTTCGAACGAGCAGA-AATGTATTGGTAACTGTAGGTGTGAGTGGGGAGGGATTAGAAAGGTGCTTGGACGTGCAAATTTGGGAGACGTATTTTAGCTTTTGTGGTCTT-TGGG---ACTAAACAGTAGTAAAT-----AATGTTTTG----CTCGTCTTTCCATCGTTTGGCTTGAGGGAGGGAGTGGAGTATTATAAGACTCTGGCAACACTG---TTTTAGACTGTGGGGCATGGGAACGTTAGATCCCCTCATCGCCGTTCTGAAGCCCGTAGCTGTTCGCCATAGAGGAGCAGGCCGCGGCTTCTAAGATGGCGTCTTTTTCCTCGTTTCAGATTCTTCGCTGCTGCTGCCTTACCGCCGAGAACCACCACCCGCCAGGCGTCTTGCGGCCACACCCCTGGCGGGTTCAGGCAGGCTACGCCCACGCGACCCCTCCCGTTTCCCTGCTTTGGCCAATGGAGGAGCTACGAATGGCACGACCTGCTCGAGCTTGGCAGTCTCCAGTTGGGCTGTGCATGGAAGCTTGGGAAGACTTTGTTGGAAGGGGAGGCGGGGAGAGAGTGCTGGAGGCTCTGGGGCGATGGCTTCCGCACCTCTTCCAACCACCCTCTTTCCCTGGAGTCGGCGGACCACAGCTCAGCCAATTGGCTTGGAGATGTGGCGGGTTGCCACTTCCCTGTGGGTCTCTGCGGCACTCTTCTGCCTGGTGACTGACACCTTGGAAATGAAGTTTATGACGTCATCGTTGCGGCTGG s canFam2.chr12 5536022 4727 + 75515492 acagaaatcaagggtgtagagaatttcaggaagaaaatatgatcaaatgtctaatgtttcagaggtcaagtaagctgagaactgaaaagttcattgtgact--gccaatcagg---tccttggtgacatctgccagaacactttcaataatggaag--------aaatggactgaagagtgggaatgggg----------cttagaaaaatttagatgatat------------tttcaggtcttgactgtgcaggatagctcagagtaaatagtctacaaaggaacacagtattggtagggttttc--cttttttgaggctggcaaaccaatacaggaggaaagtttaaaatact-aatgggaacgaAATGGAGGATAGCTTTAGAGTGATAGGCTAAAGTTGACCAGGTCTAAAGAAAAGGAATTCCCTTACATCCAAGAGAGGATTTCTAGTACAATACTAAAGGGTTACAGGCAAGGCCCAGTTTATAGGACGGAGATGGAAAATCCCGAGTCCTCCCGCAGATTGGCTCTTCTGTTCTGT---------TCTTTTGGTGGGGAATAGAGGTTATGAACTACAG--TGAGGATTTGAACCCATACACTGAG-GGTCAAGGGAGAGATTACTGGCTATAAACAAGTAAAATGTTTGCTTT--AGGTGGCAATAGAATCACCATAATAT---------------CCTTAATTTTTATGAGA-TTGATTTAACATTTATAGAACAGAGGGCGAAGCCTCAGGAAAA-AGTAGTTTTAAATGAAATAGAGCACGAGATCAGTAAAGAAGTGAAAGTGATCAGAAGGCTCTAAATTTTGTGGAAGGAAGGA--GTCGAGG--CTGGCAGGCGTCAGTGAAGCGATGAAGTAAGTCTAG-GTAGGTTCAGGGGAAGTAAGAGGCTGTAAGGCTGCTTAAGACAAAGATGCCGGAAAAAACGCCCCCATCTACCGTTCTCAGCTCATTTCCCGCCCGCGGCA----CCAGGAAGGTGATAAACCCCCTTTCCCTTTGTCGAACCACAC-----CAGGGGAAGG-CCCCACCCTGCAAGCCCTCACATCCCC-----------------TCCCTCACTGACAAGAGCTTCGAGGCGCGCGTTTTTTCTAGACT--GTACAGCGCGAACCAAGCGGCGACTTACACCTGGGTAAGAGGAACCAAAGAAGGCTGCCCCCCGGCGAACGGTGAGGCCACCGATACTGAGGGAGGAGGGGCCGCTCAGACCAGAGATAAGCGCGTCG-CGCCCGCTTCCGCCCCACCCACTGCGCGCGCTCTCAGGCCCAGCGAGGGAGCGGCCGTGCC--TCCGGACGCATGCGCTCTGTTGCGCTCCCCCGCCGACTCCAATGCTCCTTTCCCCTCCCCCAATCGGAGCTCACCCTTGCGCCTGCGCAGTGCACGTTCTCGGGCTGTGGCAGCCATGCTGAGCCCGTACGGAGAGGCTAGTGGGGGGGACGGGGTCGACGACAGCGGGATAGGAAGCCGGGGATGTGGAGAAGCAGCGGCATTAGAGCGCCCCGGCTCTCTGGAGATAGGTCAGGGCCATGCAGCCTCTTTGGCCTCTT-GCGCGACCCCCAGAAACCTTCGGAAAA-TGTTCCTCG-----GGGGG------GGGGGGGGGAGGGACGGCTGGCACGTGACCCGGGTCAGCCAATCTGAGTGTTGCTGACGTGGCGGCGCAGCCCCGACGATCTCCCCACCCCCCCAGCTCACTCGGGAAGGGAGGGGCGGGGGGTTACGCCCCCTCCCCCAACACAGCTTCGGTGTCCCGGGGGGG--TGACACCCCGGATTACGTCCTCTTCCCCCCCTCCCCCCGCACCAAGCCGAGGGGAACGTTGGCTCCCCCCTGGAAGATTCCAGGTTCCAGGTGAGAAGGGGCCCTTGGGGGGGCGGGGATGTTGCTAGTTATTTAGAAGCTTAACCAATGGTGGGGAGTCCGGG-GGATAATTCTTGGGGTTCAGAGAAGAA-CCTGAGGGTGGGAGGGTTTGTCCTTCAAACAGTTTACAGCCAATGGGAGCGTGAAGGGGGGGCGAGCGGGAGAGGGCCCCTCAGATGGGGGAGGGGAATGGCCAACCTCGTGCCTCCGTACCAATTGGAGGGCAAAGGGGCGTGGGGGCGGTGTGTCCCCCC--ATTCCATTCGTCCCCTGGGGGTAGAGGAGTCCGGAGCCAGGTGAG--GTTTCTTTTTGGCGGCCGGAGGAGAGAGGTGACCTAGA---GGGCTGAGGAGTGGGAGTGGTGACCGTATCGCCTACTCTTGGATGTGAATG-----------GGCAACCTAGGTTGTGAACTGAGATTGTTCCCGGGCGCCCACTCCCTGTCTCCCCAGA--CTCCGGAAGGAGCGTTTCTGTG---CTTTTGTGTCAGCGGTAGGAAGCTCGCAGTCCCCACATGGCATGCTGGAGGTTACGCTTCGAGTCGCTTATCGAGTTTGTGTGCATTCACGTGGACACGGCCTGTGGAGCCTTCTGCACAAACCGTTGCCTCGGCGGGGTCTTAGAAGGCTCAGCATGTGT-TACCCCAGGCCGGGGAGGGCTTACAGGCTGAAAGCTTGGGGTTCGCTTGGGAACAGAAACCAAGCCCAAGGTGGGTGCGGGGA----GGGCTGTAGAAAGCGTGGTTCAGACAGGAGCGAGTGAGTCTTAGGACCTGAAATGATTTCACAGCTCACAAGGTTTCGGGTTTCTCCAGGGTGGCGTCTTC---TGCCTCCTCCATCCCCTCCCCCCATTCCTGAACAGTTCTCTCCTTGTGTACTGCGGGGGAGGGAACGAAAAGGAGG--AGAGTTACTTTTCCAAATTCCTGACTAGCTGTTAGCCTCCCCTGTGACTCATGGTGGGGTGGGGGGGGGAAGGGAGGTTGGGAGGGAGCAGGGAGCAGTGATTTTCCGGAATGCGGGAAAGTAAGCCAGAGTAAGGTCTGGCTGCCCTTTGGCTTTCAAAGACCCAGCATTTTCGCGACCTCCTAAGTTTTTCTTCC-CGGCCGGCCCCCCTAATGGGCCTCTG--CAAACTTGCGAGGCCTCGGGTGGAGAACTGCAGATTTAGGAGGCTGGGCCACTAGGGGGAGGGGTGGGGGGAGGGGAGCAGGCCTCAGCAAAGTTGCTGTGTCATTGCCCTCCCTACTGCAGCCACCCGCGCCATCCCGCATGTACTTGT-GGGGCCGAAGCCTGGTCCCTGCGTGGGGGAGCGCGGTGGTACTAGGGGAAGAGG---CTTCCCTCCCGGTGTGCACTTCTCCCCG------CAGGGTTTGCCCGACCGGGCTGGTCGAGAAGACGTGAGGTTGGCGGCCATTTTAGACGCAGTGACCGAGGTTAGGGCTCAAGAGCTCCTGC---GAAAGGAGGGTGATGTGGTCGGAGCGCAAGGACCTAGGCCCTCACGAGCCTTTCCGGGGTGGAGGTGGAGGCG---CTTACGTTCGTTGATTTACATTAATTTCCTTTCTCAGATATGCA---------GTTTTCTATCTTCGTATCCAGAGAAGGGGAGCTGGAGAGGGAGACCTCCCGCTAAAGCCCAGGT---------TGGGGATAATTCTCCCA-------GAAGGGGTGCGGGGGTTGGGCGGGGGGCCCAGAGACGGCTCGAGAGATCCGGGTCTTGCATTCTCGGTCTTGACTCCAACATAGTCT--AGCCCTGTGCGGGTAACCGAATTGTGGGGAAGAGTTAGTGAGTGGGTT-GGGGGAGGGGGCGAGACTGAGCTCCCAAAATGGCTCCTGCCCCTCCTCGGAGGCGGACAGCCCGgggggaaggggaggaggggagagaaaggagggggagggTTAATCTGAGCTGCAGCCGCCG---CCTCCGCTCGCCCTCCTCCCTGGCGCTGACCGATGGACCAGCCGCTCCGTGGGGAGGACTCCGGACCCTCGTGGGGGGAT-GGGGGGCCCTGCCGCCCCCGAGGCGGAGGGACCCTAAGAGGGGGGATTCGGGCCTGCCCTCGGGGTTGGGGAGGGCCGGGAGCTTGGGAAGAGGTCTGAGCTCGTCAGAGGGGA-----------------------CTTCGCAGAACTTGTTTTTTCGGCTCTGAGCCGGACACCGGAATGAAGTTTGGGGCGGAGGTGG-----GTTTCATTTTACAGAG-AAATGGGTATGTTTGGAGATTTTGCCTTCAC-TTTAGGGCTGCTGGGATTTTGCCGAGCAGGCGGATACTTTATGGGCAACTGT------------GAAGGGATTGGAGAAGTGCTTGGGTGTGC--GTTTGGGGAA--TATCCTAGACTTGGTTGTCTTGTGGGTAAGCTAAGCCTTTGAGAGCCCGTGGATTCTTTGTGCCTTTGTCTTCCGATTATTTGACCTGGGGAAAGGGAAGGAT--TTTTTAGACTGCAGCAAGCCTGTATTTTTTTATTGTGGAGCTCGGGAACGTTAGATCCTTTTGCTA-CGTTCGGGAGCCCTTAGTTCTCCGCCAGA---GAGCAGGCCGCGGCTTCTAAGATGGCGTCTTCTTCCTCCTTTCAGATTGCTCACAGCAGCGGCCTCTTCGCCGAGAATCACCGCCCGCCAGGCGTCCTGCGGCCACA-CCCTGGCGGGCCCCGGCTGGCTACGCCCACGCGGCCCCTTCAGTCCCGTCGGCCTGGCCAATGGAGGATCTGCAAATGTCACGACCTGCCCGGGCTTGGCAGTCGCCGGTCGCACCGGGCCTGGACGCCTGGGAAGACTTTGTTGCAAGGGGAGGCGGGGAGAAGGCGCT------------------------GCACCCATGCCAG----CCTCTCTTCCTGGAGTCGTCGAACCACAGCGCAGCCAATTGGCTCAGAGATGTGGCGGTTTGCCGGTTCCCTATGGGTCTATGCGGTACTCTTCTGCCTAGTGACTGACACCTTGGAAATGAAGCCTATGACGTCATCGCTCCAGCGAA a score=361513 s hg19.chr6_ssto_hap7 4420566 6489 + 4928567 CCAATAGAAAAAGCTCCCGCGGAGAGGTGTTCCTTCCCCTTCGACTCAGCTTCTTCACCCGCGTGAGCGAGCGCGCGCGCGCGGAGGGGGTGGGGAAAATCTCAAGCAGGGTGGCGCGCATGAGCGGCGAAGCTCCTCCTCCCCGCCTATATATAAAGGGCTGGCGCGGGGCTCGGCGGCGCCATTTCGTGCTGGAGTGGAGCAGCCTCTAGAACGAGCTGGAGGATTCTGCCTACCGATACAGAGCCTTCGAGTCGTCCGGGGCCGCCATTACAATCCACCTCCATCCGCTTGGAAATGGCCTTCGTCCCGGCCTATGACTGGTCCCAGCGGGCAGTACAGACCCCCTAGAAGCCCCTGGAGCTCCCCTTTTTCGGGCCCCGCCCAATCCTCGGAGTCTGTCCACCCCCTCTACTCCGCCCTCAAGAGGATTTCAAAGATGGAGGCGGCGGCTCCCTAAACCACTTTTCGTGTTCATCCGCCTCCATCCGAGATCGAAACGGGACCTCGTCGGCCCCGTAGGGGCCCGACAAGAAGAGGGAATCCCTGCAGACCAACAGCGGGCTATATTGACGACGGTGTCTGAGATCGGGGACCGTCTT-----TTGAAGAGTCAGTCCCTCCTTAGTTGCCCGCCTCAGCTGAGGCCGCCGCCATTTTCTTGCTGTCCGCCGTCTGCAGAGCGCGCCAAGCTGCCCGGAGCTCTCCGAGAGGCCCCAAAGA-GACTGCTTTCGTGCCGGCCAGGCAGGGG----GTTTGTCGCCTGGAGGCCCAAGAGGAACGGCCT----CCCCCCAACTTAGCGGGTTATGCTGGACCGGGCGGTGAGGGGAACCGAGGCCACCCGGACTTTCCGCGGCTGAGGGCAGCGCCGGTTCCTTGCGGTCAAGATGCTGCAAAACGTGACTCCCCACAATAAGTACGTTTCCGCGAGCCGCGTGTGGGAAGGGGATGTTGCAGGGCGGCGGCACAGGGGTGTGGGGCGCCGTGTT----GGGAGTACTGAGCGGCCCCGG--CGCGCTGCTGTTGC--GGCGCAGCTGTCGACTC--GGTCGCGCGGAGGGAATTGAGCGACGGTTTTGGAACGGTGGTGGCGGCTCGGCTACTGCTCGTGGAGGGGAATACAGGTTGTCAATTTATACGCTATTAATGCCGCCGTGGCCCAGTCTTAACCGAGTCAGGCAGAGCTAGTTTGACGGTGGAGTGGAGTGAG---------------GTTGAACAGCAGGTTTGGCGTTTGGTGGGTCTGGTATCTAGCGGCGGTCTGT--TAGCCTTTTAGGGGGGATTCACGGACACCTCTAGCGCCCTGTAGGGTTGCCATGGTGACGGAGCGCTTAAGGGACTGGCAACGGGGATTCCCAGAGAAGGGTAAAGGGATCACTCTCCCGTGTGTGCAGGTTCCTAATGCCCAGGGCATGTCATTAAGTCTTTTGCTTTCTTTGGGTGGGTGGGTTGTGTGTGGTGTT-------TGTTGG-------------TGCAGGGATTGTTTTTTCCTAACATTAAAAGTTTGATTCAGGGCAGGAGGGTAGAGCTAAGGTTCCTAGTTCAGCTCTGCG-ATGTAAACAATGAGAT-TCCCATATGATGTTTTAATTCTTAGGTGGTAGGA-AAGACTGATCGGAGGAGCACCAGAGGGACTGTAAAT--GAACCACTGTTAGCGTTTGGTGTCCGGAGT-TGGTGCTACAGGGGGAACTGGTAGTGGAATCGTGTTGTGTAGTGGGTGGGTGGAAGGGGGCTATCACT--------------TGGTGACCTTGACTGT---TTTGTACGG----CTTTTTGACTTCCTTGGAGTGAGGAGACTCTGATTTGGTGCGAATAATTTTGAGGGCCTGGAAGTTA--------CGGGCTGTGAAGTCTGACAAAT-TCTTCCTTGTCTGAATTTGTTTTTAAGTTGATATGGTTCTTCCTCTGGGTTTCTAGTCTATGTTCTGTTGTGGCGTGAACTACCCAGACCTTGTGG-----AAGATGGTGCTCTCTCTTCTATCTAGGTGGATTATTCTGTGTCTTATCAGCATTTTATGGAATTTTTTATAGCCATAATTTGTTC----TTTTCCTCCTTACCGGC--GCTCAACCACCATGGCAACCACCAAACCCCTAGTGAGGAGGAAGCTTGGGGTTTGAGTTTCTTAACTCCACCCATTTTGCTTAAGCCCCATCCCCATAGGGCTGTAG-TTCTGAGATGTCGTGCCTTGTCAGAAACAATTTGGGAGTTTT----TTAAA------ATATGAAAAAGAACAGATAGAGCCTATCAGACTTAAGAAGG----------------TGGGATCTAGATA-GTATACTAAAAATATT--AATAAAAGGAAGGCG-GGGCCAGCAATAAAAGCTCCACAGATTGTTTGGATAT--TGTTTCTGCTTAAGAAGCACTTGGCATAAGCTTAACCAC--CTCACTAGGGCCAGCACCTGGATTCATC-AGACTATTGTGCAGATGCACTTTTTCCTCATTTGGACGATATTGC----CCTAATTTTGTTCCCATCTTTACAGGCTCCCTGGGGAAGGGAATGCAGGGTTGCTGGGGCTGGGCCCAGAAGCAGCAGCACCAGGGAAGAGGATTCGAAAACCCTCTCTCTTGTATGAGGGCTTTGAGAGCCCCACAATGGCTTCGGTGCCTGCTTTGCAACTTACCCCTGCCAACCCACCACCCCCGGAGGTGTCCAATCCCAAAAAGCCAGGACGAGTTACCAACCAGCTGCAATACCTACACAAGGTAGTGATGAAGGCTCTGTGGAAACATCAGTTCGCATGGCCATTCCGGCAGCCTGTGGATGCTGTCAAACTGGGTCTACCGGTGAGTAGAGACATTGGAGCCGGGGAGGTGT--GGGATGAGCAAGAATGCGTGTGAATGGGGGTGGTCTGCCTAGTGTAGATGCTGCGGCCCCTAGGGAGTTCCCATTTCTCCCCTGTAGGGCAGTTAGCTACCAGATTTCTGGGTATCTTGGTCCTTTGTGATT---GATCCGACCGCTTGCTGTAACTATCTTGGCATCTTTCCTTGTGCCC--TCCATGTGTCCTTCCTTAACTTTTGTGCCCTGGCTCCATTTTACAGATTCCCACCTCGGGTTGGGAGAGGACCACGGTGGCCAAAATTCTTAGCTTCTTCCTTTCCCTCATGCAGCCCATGGATAGCCAGCCCCAGAGGTAATGTCACAGGATGGGAAGT-TTCCAGAGTGGGTGGGAGGTGGGTGGTTAGAGAAAGGCA---GCAGGGGCCTCCCTGTGGATGTCAAGAATCttttttatttatttatttattttGTCCCACAGTTTAATTGGGGCCGCAGTTTAAGTAACTGTTCCTTTGATGCATAGGGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgAGAGTCGGGGATCGGTAGTCTCCCTATAAGCATTTAT-TTTTCTGTGGTTCTGACCTAACATTTTTTTATTTAGGATTATCACAAAATTATAAAACAGCCTATGGACATGGGTACTATTAAGAGGAGACTTGAAAACAATTATTATTGGGCTGCTTCAGAGTGTATGCAAGATTTTAATACCATGTTCACCAACTGTTACATTTACAACAAGGTGAGTTTTTCTGTGTGTTCATTTAGTAGGTGGGGAGAAACAGTAACTTCTATTATTGCTGGATATGTTGTCTACATAAAGTTTAAATCCTTTGCTACTGAAGGTGTTATCCAGGTAGGGTAGTCGGAGTCTTAAAAACCTGA-CTCTAGATGGTACTATTGAACACAGTGATG-----TGACTTCAGAGCTCT--AGTTGAAGGTTATTTA----GAACACTT-CATACTTGGGGGTGGTGGTCCTGTTTCTTA---GAAATCACCAGAGAC-------CTGAGTAGACCAGGGATCTGTTTTCTTGTCAGCTCTCA---------------AGTTTTTTCTTCTTTCGAATTTTGGGAGACAGTTAGGAGAAAGTGGAAATTAGTAGT--GGCC--TGGAGTAGGAAATTTTCTTTAAGATTTGATGACAAGATGACTGGTGGGGGTATGGTAAT-----GGCCTAGGGCC-TGAATGCCTCTGAGAAAGATGGTGTGTATCTATCTTCTGTTGGCATTTTTTAACTTTCTTTATTGCTGTCTGTGTTCTCATAGCCCACTGATGATATTGTCCTAATGGCACAAACGCTGGAAAAGATATTCCTACAGAAGGTTGCATCAATGCCACAAGAAGAACAAGAGCTGGTAGTGACCATCCCTAAGAACAGCCACAAGAAGGGGGCCAAGTTGGCAGGTAGGAAGAGTGGGAGTTTTGCAAATGGACAACTAAAGATGGGGAA-GAGAATCAAACTACACTTTTTTCCTTTTTTCT-----------------------AGCGCTCCAGGGCAGTGTTACCAGTGCCCATCAGGTGCCTGCCGTCTCTTCTGTGTCACACACAGCCCTCTATACTCCTCCACCTGAGATACCTACCACTGTCCTCAACATTCCCCACCCATCAGTCATTTCCTCTCCACTTCTCAAGTCCTTGCACTCTGCTGGACCCCCGCTCCTTGCTGTTACTGCAGCTCCTCCAGCCCAGCCCCTTGCCAAGGTAT-GATCTGTGGATTTCCTCTGGGCAGCAGGGAGGCAAGGGTCTTAAGTAAAGTGGGCTTGGAGTGACAGGTTCCCTATCTTGTTTCTTTCTGCAGAAAAAAGGCGTAAAGCGGAAAGCAGATACTACCACCCCTACACCTACAGCCATCTTGGCTCCTGGTTCTCCAGCTAGCCCTCCTGGGAGTCTTGAGCCTAAGGCAGCACGGCTTCCCCCTATGCGTAGAGAGAGTGGTCGCCCCATCAAGCCCCCACGCAAAGACTTGCCTGACTCTCAGCAACAACACCAGAGCTCTAAGAAAGGAAAGCTTTCAGAACAGTTAAAACATTGCAATGGCATTTTGAAGGAGTTACTCTCTAAGAAGCATGCTGCCTATGCTTGGCCTTTCTATAAACCAGTGGATGCTTCTGCACTTGGCCTGCATGACTACCATGACATCATTAAGCACCCCATGGACCTCAGCACTGTCAAGGTACCCACTGCATGGGGCAGATGGGATGCTCAGGCAGTGATGGGAGCCTAGGT----GCAAAACAATAAGTCTCCTTATGTGGGCACACAGCAGTCTTTGGTTCTTGGCATTTTACTTTTATAAAATAATAGTGGAACAGAAGGTCTGGTGTTTTGAGAATTTGTATTTCTTGGAGTTTGAAACAGTAGGGTGGGGTTTCTTTGTCTTGAGAAAAATACTGTCTATAATTAAGTACTAATGTGGCAGTGTTGGGTTAAGGAAGTTATAGGGTGGAAAGACAGGCATAGGCCACC------TCTCTGTCACTTAGAAATGATTTCTTTTTCTAGACATAAATATTTCTTCAACCCACCCAAATTCCTTTGACTTCAAACTTGAACCCCAGGGCACAGATCCTTAAGGTCATCCCCACTGTGCTCTCAAGAGAGGGCTCTTCTTGTGGTGTCTGGGGTTGGCAGGGAAAGGTGAGTCTTCCTGCCTGTGCAGCTTCTGATGCTGCCTCCTTCTGCAGCGGAAGATGGAGAACCGTGATTACCGGGATGCACAGGAGTTTGCTGCTGATGTACGGCTTATGTTCTCCAACTGCTATAAGTACAATCCCCCAGATCACGATGTTGTGGCAATGGCACGAAAGCTACAGGTGAGTGGAAAGGTTGGAGTTTGAAAAATAAA------TGGTATGGGGAGTTATTTTGTCATGTGTGCTGCATAGCCTCAACGTGAGGGTCTCACTGTTCTGTACAG-TTGTAAATTGGAGCTATAT-----CACTTGGTGGCTGGGTATG--TAGGGCACTGTTTATCAGCATAGTTTTGAGTTTGTGCCTCTTTCTAGGATGTATTTGAGTTCCGTTATGCCAAGATGCCAGATGAACCACTAGAACCAGGGCCTTTACCAGTCTCTACTGCCATGCCCCCTGGCTTGGCCAAATCGTCTTCAGAGTCCTCCAGTGAGGAAAGTAGCAGTGAGAGCTCCTCTgaggaagaggaggaggaagatgaggaggacgaggaggaagaa---gagAGTGAAAGCTCAGACTCAGAGGAAGAAAGGGCTCATCGCTTAGCAGAACTACAGGAACAGGTATTTTGTCACTCTTGAAAGTTTTTATTGGGTAAGAGGTTCATGCCCTTTGTCCTCA------TTTTTTCTTCTTGTTATTTTATCTTTATTTACTTTTTCCACTTCATGTTTTTTTTCCTTTAGCTTCGGGCAGTACATGAACAACTGGCTGCTCTGTCCCAGGGTCCAATATCCAAGCCCAAGAGGAAAAGAGAGAAAAAAGAGAAAAAGAAGAAACGGAAGGCAGAGAAGCATCGAGGCCGAGCTGGGGCCGATGAAGATGACAAGGGGCCTAGGGCACCCCGCCCACCTCAACCTAAGAAGTCCAAGAAAGCAAGTGGCAGTGGGGGTGGCAGTGCTGCT---TTAGGCCCTTCTGGCTTTGGACCTTCTGGAGGAAGTGGCACCAAGTGAGTT-----AGAGTAGGAAGCAGAGACTAGTTTGGCTATTTCTGTCTC--TCTGGGGGATGCCATCTCTCTTTGCAAAGATAATTCtaaatggccagttaacagat--------------acaataggctttga s canFam2.chr12 5540749 6578 + 75515492 CCAATAGGAAACGCTCCCGCGGAGAGGTGTTCCGCCCCTTTCGACTCTGCTTCTTCACGCGCGTGAGCGAGCGTGCGCGCGCGGAGGGGGTGGGGGAAATCTCGAACACGGTGGCGCGCATGAGCGGCGAAGCTCCTCCTCCCTGCCTATATATAAAGGGCTGGCGCGGGGCTCGGCGGCGCCATTTCGCGCTGGAGTGGAGCATCCTCTAGAACGAGCTGGAGGATTCTGCCTACTGATA----GCCTTCGAGTCGTCGGGGGCCGCCATTGCAATCCACGTCCATCCGTTTGGAAATGGCCTTCGTCTCGGCCTATGACCGGTCCCGGCGGACAGTACAGACCCCATAGAAGCCCCCGACGCTCCCCTTTTTCGGGCCCCGCCCAATCCTCGGAGTCTGTCCACCCCCTCTACTCCGCCCTCAAGAGGATTTCAAAGATGGAGGCGGCGGCTCCCTAAACCACTTTTCGTGTTCATCCGCCTCCATCCGAGATCGAAACGGGACCTCGTCCGCTGCGGGCAGTCCCAGCAGGAAGAGGGGATCCTTGCAGATCAACAGCGGGCAGTATTGACGACGGTGTCCGGGATTGGGGGCCGTCCTAGTGTTTGAGGAGTCCGTCCCCCCTT----GCCCGCCTCTGCTGAGGCCGCCGCCATTTTCTCGCTGTCCGCCTCCCGCGGAGCGCGCCAAGCTGCTGGGAGCTCTCCGAGAAGCAGCGGAGAAGACTGCTTTCGTGCCGGCCCGACGGGGGCGGGAGTTGTCGACTGGAGGGCCAAGGGCAGGGGCCCTCCACCCCCCCACTTCCCGGGTTATGCTGGAGCGGGCGGTAAGGGGAACCGAGGCCACCCGGACTTTCCGCGGCTGAGGGCAGCGCCGGTTCCCCGTGGTCAGGATGCTGCAAAACGTGACTCCCCACAGCAAGTAGGTTCTCGCGATCCGCGTGTGGGAAG---ATGTTG-GGGGCTGCGGCACGGGGACGTGGAGCGTCGGGTTCGGAGGGAGGACGGAACCGACTCGGGGCTCGTTGCTATTCCATGGCGCGACTGTTGGCTTTTGGGCTCGCGGAGGGGGTTGGGTGACGGTTTTGGAACGGTGGTCGAGGGCCAGGTACTGCGTATGGAGGG-AGTACAGGTTGTCCATTTATACGTTACTTTTCTCGCCGTGGTCCAGTCT-AACCTAGTCGAACAGAGCTGGGTTGGCGGCGGAATGTAATGGGAAAGGACAACGTTGAGTGGGGTAGCCGGTCCTGCAGGTGGTGGGTCTGGTGTGTAGCAACGGTTTATCATAGGTCTTTCAGGGTGTTGAGTGGCCACATCAAGCACCTTATAGGGTTGCCATGGTGATAGAGCCT------GACTGGCGACGGAGATGGCCAGAGTGGGGCAAAGGGATTACTTTTC---GTCTATGGGTTTGTG-TGTCCAGCTTAGGTCATTGAGTATT---CTTTCAATGACTGAGTCAGTTTTGTGTTGTGTTGAGGATTTGTTTGCATGCGTTTTCTTTGGAGGGGATGTTTTGGA-TAGCTCTGAGAGTTACATTCGGGGCAGGAGGGTGGAGCTAAGGATTTTAGTCCAGCTCTGCGGATGTAAACAATGAGATCTCCCATGTAGTGTTTGTAGTTCTGGGCCCTGGGATACCCCTGGTCGT--GACTAGTAAAGAGAATGTAAGTTTGAACCACT-TTGGCTGTCGATTCCCAGAGTCTGGTGCTAGAGTGGGAGCCGTTAATGTAATTTTTTTG----GCGGGGTGGTGG--GTGGTCCATCACTATCCAGCTGAAATGTGCTGACCTTGACTGGGGACTGGGCCGGGTCTATTTTTGAGTCTTTTGGAGGAGGGAGA---GGAATT----CGAGTAATTTCTGGGGTCTGGCAGTTGGATTATTCCAGGCCCTGAAGTCTGACAAATGCCCCCCTTGTCTCAAAATAT------GTTGGTAAGGTT-TTCCGTTAGGTTTCTGATTCATTCTCTACTAAA-----AATTAAACAGAGCTTGTGGGGAGGATGATGGTGTGTTCTCTTGTGCCCAGATGGATTCTTAGGTGTCTCATCAGCATTTTGTAAAATTTGCT----TCCTATTTTGTTCCGCTTTTCACTCGTTTCCCTCAGGCTCAACCACCATGGCAACCACCAAGCCCCTAGTGAGGAGGAAGCTTGGGGCTTGTGCTTCTTTGCTCCACCCATTTAGCTTAAGTCCCATCCTGTAAAGCTCGTGGATGCTTTGCTGTTATTCTATATGAGAAATTGTTTTGGGGCTTTACTTTTAAAGGAGTGATTTAAAAAATaataaataaa---taaatgaataaataaGTGAGTGGTAAAGCTTGTCGGAATCTGGATAAGTGTACTCAACATAGGGAAATAAAAAGTGGGGGAGGGGCAAGAACAAAATCTCCACTGATTGTTGGGATATGCTGGCTGTGGTTAAGATCCACTTC-CGTAAGCTTGATTGTTTCTCACCAAATTCAAAACCTGGATTTATTGAGTATGTAGTATAAGTG---GCAGTACTGATTTTCATAAAATTACAACATCTAATTATGCCTCCCATTTCACAGGCTCCCTGGGGAGGGGAATGCAGGGTTACTGGGGCTGGGCCCAGAGGCAGCAGCACCAGGGAAAAGGATTCGGAAGCCCTCTCTGTTGTATGAGGGATTTGAGAGCCCTACAATGGCTTCAGTGCCAGCTTTACAACTGACCCCTGCCAACCCACCACCCCCGGAGGTGTCCAATCCCAAAAAGCCAGGACGGGTTACCAACCAGCTTCAATACCTGCACAAGGTGGTGATGAAGGCTCTGTGGAAACATCAGTTTGCATGGCCCTTTAGGCAGCCTGTGGATGCCGTCAAACTGGGTCTGCCGGTGAGTAGGGATACTGGAGTCGGG-AGGTATTGGGAATGAAGAAGAATGTGTGTGAGTGGAGGTGGGCTGCTTAGTATAGGTGCTGCGGCCCCTAGGGAGTTCCCATCTCTCTCCTGTAGGGCAGGTAGCCACCAGATATCTGGAT-TCTTGGTCCTTTGTGATTATTGATCCAACCGCTTGCT------ATCTTGGCATCTCTCATTGTGCCCCCTCCATGTGTCCTTCCTTAACTTTTGTGCCCTGGCTCCATTTTACAGATTCCCACCCCAGGTTGGGAGAGGACCACGGTGGCCAAAATTCTTAGCTTCTTCCTCTCCCTCATGCAGCCCATGGATAGCCAGCCCCAGAGGTAATGTTTCAGGATGGGAAACCTTGCAGAGTGGGTGGGAGATGGGTGGTTAGGGAAAGGCATAGATAGGGGCCTCCAACCGGGTGTTAAGAATCTCGTTCCATTTTTTCTCTGT------CCTTAGTTTAATTGGGGCCGCAGTTTAGGGGAATACATATTT--TGCATAGGGGATGTGTATGTGTGTGTGTGTGTTTG---------CTGGGGTCAGTAGTTTGTCTAGGAAAACTGGCATTTTCAGTGA--CTGATCTAGCGTTTCTTTCTCTAGGATTATCACAAAATCATAAAACAGCCTATGGACATGGGTACCATTAAGAGGAGACTTGAAAACAACTATTACTGGGCTGCTTCAGAATGTATGCAGGATTTTAACACCATGTTCACCAATTGTTACATCTACAACAAGGTGAGTTTTTTTATGTGTTTATT-AATAGGTGGAGAGAGAGTG---CTTATGTTATT-------ATTTTATTGGTATAATGTTT---------------GAAGGTGTTTTCAAAGTAGG-----TAGGATCTAGAAAATCTGAGCTCCAAAGGATACCCCTGAGCACAGTGATGGGATGTGGCTTCAGAAATCTGAAGGTGAAGGTTATTTAAGTAGAACATTTTCATACTTGGGGATGATGACCCTGTTTCTCAAAAGAAATCTCCAGAGAGATTTTTGCTGAGTAGAGC-GGAATGTATTCTCCTTGAGAATCTCATTCCCTTACATTTGAACTTTCATTATTTACTGCATATTGATGGACAATTGGGAGGATATGGAGATAAGTAGCCCAACCAGTGTGGTGG------TTCTTAGTAATT--ATGACAAAGT---TGGAGAGGTGATAGTAGTATTTGGACCTAGGAATAGGAATGCCTTTGAGAAAACTGATGTGT--CTGCCTTTAACTGGCATTT---GAATCTTTTTGTT-----------TCCTGTAGCCCACTGATGATATTGTCCTGATGGCACAAACATTGGAAAAGATCTTCCTACAGAAAGTGGCATCAATGCCACAAGAGGAACAAGAGCTTGTGGTGACCATCCCTAAGAACAGCCACAAGAAGGGGGCCAAATTAGCAGGTAGGAAGAGCCGCAGTTTTCCTAATGGAGAT---AAGATGGGGAAAGATAACAGAACTAATCTTTTTTTTTTCTCTCTCCCACCCCACCCCCCCCACCCCCAGCACTCCAGGGCAGCATCACCAGTGCCCACCAGGTGCCGGCTGTTTCTTCTGTGTCTCACACAGCTCTATATACTCCACCACCTGAGATACCTACCACTGTCCTCAACATTCCCCACCCATCAGTCATCTCTTCTCCCCTTCTCAAGTCCTTACACTCTGCTGGACCCCAGCTCCTTGCCGTCTCTGCAGCTCCCCCAGCCCAGCCCCTTGCCAAGGTACAGATGTGTGGATTTCTT-TGGGCAATGGGAAGGGAAAGGTCTTGAATGAGGTGGACCC----TAAAAGGCTCAC-ATCTTATTTTTCTCTACAGAAAAAAGGCGTAAAGCGGAAAGCAGATACTACCACACCTACTCCTACAGCCATCCTGGCTCCTGGTTCCCCAGCTAGCCCCCCTGGGAGTCTTGAGGCTAAGGCAGCACGTCTTCCCCCTATGCGTAGAGAGAGTGGCCGCCCCATCAAGCCCCCACGCAAAGACTTGCCTGACTCTCAGCAACAACACCAGAGCTCCAAGAAAGGAAAGCTGTCAGAACAGTTAAAACATTGCAATGGCATTTTGAAAGAGTTGCTCTCTAAGAAGCATGCTGCCTATGCCTGGCCTTTCTATAAACCAGTGGACGCTTCTGCTCTTGGCCTGCATGACTACCATGACATCATTAAGCACCCCATGGACCTCAGCACTGTCAAGGTACCCActgcatggggcagatgggatgctcaggcagtgattggaactttgggttcaataaaacaatcagtgacttcttacAGGCACACGGCGATC-TTGATTCTTGGTATTTTATTTTTATAAAACAA---CGGGACAGGAGGTTAAGTACTTGATAATAGTATTTTTTTGGGAGTTGAAAACTGTATGGTGAG----TTTTGTTTTCAAAGCAATATTA---ATGTCTAAGTGCTACT-TAAGAGAATTGGGTTAGGGGAGTAAGGGGTTGGAAGG------ATAGGCCACCCATCCACCCCTATCACTTAGAAATGGTTTTTTTTTCTAGACGTAGATATTTCTTCAACCCACCCAAATTCCTTTGACTTCACACTTGAACCCCAGAGCATAGATCTTTAAGGTCATCCCTACTGTGCTCTCAAGAGAGGGCTACTCTTGCGGTGTCTGGGGTTGGCAGGGAAAGGTGAGTCTTCCTGCCTGTGCAGCTTCTGATGCTGCCTCCTTCTGCAGCGGAAGATGGAGAATCGTGATTACCGGGATGCACAGGAGTTTGCTGCTGATGTGCGGCTTATGTTCTCCAACTGCTATAAGTACAATCCACCAGACCACGATGTTGTGGCCATGGCACGAAAGCTACAGGTGAGTGTCACAGTTGGAATTTGAAGAACAAATGAGTCTGGGGTAGGGAGCT-TTTTGTCC--TCTGCTGTACCACCTTATTGTGAGGCTGTCCCAG-TATATACAGTTTGTAAATTGGAGCTGTACCTTAACACTAGGTGGCTGGGTGTAATCGTGGGACCATTCACTAGTGTGGTTCTGAGGATGCCTTTTTCCCTAGGATGTATTTGAGTTCCGTTACGCCAAGATGCCGGATGAACCACTGGAACCAGGGCCTTTACCAGTCTCTACTGCCTTGCCACCTGGGTTAGCCAAATCCTCTTCAGAGTCCTCCAGCGAGGAAAGTAGCAGTGAGAGCTCTTCTgaagaagacgaggaagaagacgaagaggaggaggaggaagaagaggaGAGTGAAAGCTCGGACTCAGAGGAAGAAAGGGCTCATAGACTGGCTGAACTACAGGAGCAGGTATCTTGTCACTC-----GGTTTATTTTGTG-AAGTTGTTTAT----TTTGCCCTAAAATTTCTTTTTTACTCCTTTTATTCTGCTTTATTTTTCTGATTATACCTCTGAATTTTTGGTCTCCAGCTTAGGGCAGTACATGAACAACTGGCTGCCCTGTCCCAAGGCCCAATATCCAAGCCAAAGCGGAAGAGAGAAAAAAAAGAGAAAAAGAAGAAACGGAAGGCAGAGAAGCATCGAGGCCGAGCTGGGGTTGATGAAGATGACAAGGGATCTCGGGCACCCCGCCCGTCTCAGCCCAAGAAGTCCAAGAAAGCGAGTGGCAGTGGGGGTGGCAGTGCTGCTACACTAGGCCCCCCTGGCTTTGGACCTTCTGGAGGAAGTGGCACCAAGTAAGTTATAAGAGAGTAGGAAGCAGAGACCAGCTTGGCTATTATAATCTCAGGGTGGGGGGTG-------TGTGTGTGAAGTTTTATCTAAGCcagaggtcaacaaatgtttaattggcaaggtaacaagtactga a score=2685 s hg19.chr6_ssto_hap7 4427369 170 + 4928567 ctttgggagtcagggtgtttcacag--ctactctgacag--tgaactcaaagtagccataaac----tagaaacatgaagatggctgtgttccaaaaagactttatttgca--aagacacgtggcgatc-agatttgttctctgggccatatagtttg-ccTGTTGCTCTAAATCAATGAGT s canFam2.chr12 5547327 173 + 75515492 ttttgagaactgtagagttccaaagttccaccctggtggaataatgcaaaagcagccatagatattatggaagcgtgggtttagaactattctaataaaactttatttacatgaaaactagtgactagctagatttgTCTTC---------TAATTTGTTCCTTCTCTCTGCACCAATAAAT a score=1767 s hg19.chr6_ssto_hap7 4427943 41 + 4928567 GGTAGTGTTTAAGGGAGCAGAAAGA----CCCATGTCAGTATACC s canFam2.chr12 5547524 45 + 75515492 AGTAGTAGTTTAGGGAGCAACAAGATGAGTTTCTGTCAGTATACC a score=103910 s hg19.chr6_ssto_hap7 4428207 1910 + 4928567 AAAATGCTCTGTTTCACTATACAGTGTCCCAGTAGCCCACCTCTTACTTGG----CCATTGA----ATGGAAAAACAGAAGCTCCACTCTGGGCAGGAAATAGGATCACTGAATTATAACAGTGGGAACATACTGGAAGAGGTTAATGAAGCTTCTTTTGCTGACAACTCTTTTTGCCCTTAGGCTCCCCAAAAAGGCCACAAAGACAGCCCCACCTGCCCTGCCTACAGGTTATGATTCAGAGGAGGAGGAAGAGAGCAGGCCCATGAGTTACGATGAGAAGCGGCAGCTGAGCCTGGACATCAACAAATTACCTGGGGAGAAGCTGGGCCGAGTTGTGCATATAATCCAAGCCAGGGAGCCCTCTTTACGTGATTCAAACCCAGAAGAGATTGAGATTGATTTTGAAACACTCAAGCCATCCACACTTAGAGAGCTTGAGCGCTATGTCCTTTCCTGCCTACGTAAGAAACCCCGGAAGCCCTACAGTACGTATGAAATGA------GGTTCAT-------------CTCA--TGGTTCTGAGGACAGT-TGAGGAAAGATGGTGGGGTCTGTTTGCATTCAGGATTGTCAGCTCCC-AGGATAATGGGATGTGTTGGTTGGCAGCTGACGTTCAAGAAGGGAACTT-------GGGAACCTTAGGGGCCCATAATAAGATGC-------------------------------------------------------------------------------------------TTGGGGCAATCTTAATGTATCCTGATAAATTTCTTTCAT-TAGCCATTAAGAAGCCTGTGGGAAAGACAAAGGAGGAACTGGCTTTGGAGAAAAAGCGGGAATTAGAAAAGCGGTTACAAGATGTCAGCGGACAGCTCAATTCTACTAAAAAGCCCCCCAAGAAAGGTGAGTATATACTTTCATGCCACTACAGATTGACTCCATCCTGCCTTCTTGACTGTCTTTTATTGACAAATGAAGATTCAGACTTGAACGTCTTTAACTTTCGAATTTGTTCTGCAGCGAATGAGAAAACAGAGTCATCCTCTGCACAGCAAGTAGCAGTGTCACGCCTTAGCGCTTCCAGCTCTAGCTCAGATTCCAGCTCCTCCTCTTCCTCGTCGTCGTCTTCAGACACCAGTGATTCAGACTCAGGCTAAGGGGTCAGGCCAGATGGGGCAGGAAGGCTCCGCAGGACCGGACCCCTAGACCACCCTGCCCCACCTGCCCCTTCCCCCTTTGCTGTGACACTTCTTCATCTCACCCCCCCCTGCCCCC-CTCTAGGAGAGCTGGCTCTGCAGTGGGGGAGGGATGCAGGGACATTTACTGAAGGAGGGAC----ATGGACAAAA-CAACATTGAATTCCCAGCCCCATTGGGGAGTGATCTCTTGGACACAGAGCCCCCATTCAAAA----TGGGGCAGGGCA-------AGGGTGGGAGTGTGCAAA-GCCCTGATCTGGAGTT-ACCTGAGGCCATAGCTGCCCTATTCACTTCTAAGGGCCCTGTTTTGAGATTGTTTGTTCTAATTTATTTTAAGCTAGGTAAGGCTGGGGGGAGGGTGGGGCCGTGGTCCCCTCAGCCTCCATGGGGAGGGAAGAAGGGGGAGCTCTTTTTTTACGTTGATTTTTTTTTTTCTACTCTGTTTTCCCTTTTTCCTTCCGCTCCATTTGGGG-CCCTGGGGGTTTCAGTCATCTCCCCATTTGGTCCCCTGGACTGTCTT--------TGTTGATTCTAACTTGTAAATAAAGAAAATATTATTCAAGTTTTGAGTTACCTTAATA---TTTGCTTTTGTAGTGTTTCAAAAGGAACATCATAAGAATTGTCTTGATAATTTTGAGGGAAATATTACTGCAGTGA-GAAAAGGCAATAGCTAACCTATAATTGGATTGTCTTAATTTTTAAACC---AGTAGGCTTTT-GCTGTGTTTTTAATAAAGTAAATATGACTTTTGTAAATTGAGTCCTTAGAAGTAATCTTTAGGTCTACAATTTGCTCTTGTTTA--------------------------------------------AATGAAAAATAGTA s canFam2.chr12 5547617 2068 + 75515492 GAGAAGGTCTGTTTTCCTGAGGAATATTCTAGTATCTCAACTC-TAGTTGGCTCACCATTACCCTTGTGGGAAAACTGAAGCTTCACTCTGGCAGGAAATTAAGACTTCTGGATTTAAATACTGGGAATGTGTCGGGAGAGATTAGTGATGCTTCCCTAATTGATAATTTTTTGCCTATATAGACTGCCCAAAAAGGCCACAAAGACAGCCCCACCTGCCCTGCCTACAGGCTATGATTCAGAAGAGGAGGAAGAAAGCAGACCCATGAGTTACGATGAAAAGCGACAGTTGAGTTTGGACATCAACAAATTACCTGGGGAGAAATTGGGTCGAGTTGTGCACATAATTCAGGCCAGAGAGCCCTCTTTGCGTGACTCAAACCCAGAAGAGATTGAGATCGATTTTGAAACCCTCAAGCCATCCACGCTTAGAGAGCTTGAGCGATATGTCCTTTCCTGCTTACGAAAGAAACCTCGAAAGCCCTATAGTGAGTATGAAATGACCCTTTAGCACATTAATCCGGCAATCCTCAAGTAATTCTGAGGACAGTGCGGAAGAGGGTACTAGGGTATGCTTGCAGTCCGGATTGTCCACTTCTGAAGGTGTGGGGATTTGTTGGTTTCC------TGATCAGGAAAGGAACTTTGCCGAAGGGAAACTGGGGG---------AAAATTaggaagacaaaccacgagagactcctgactggaaaacaaaggattgcagaaggtgtggggggggggcatagggtgactaggtgacgggcactTTATGGCAATCCTTAGA---CCTGGAGTGTTTCTTACTTCTAGCCATTAAGAAACCTGTGGGAAAGACCAAGGAAGAGCTGGCTTTGGAAAAGAAGCGAGAACTAGAAAAGCGATTACAAGATGTTAGTGGGCAGCTCAATTCCACCAAAAAGCCCCCCAAGAAAGGTAAG--TATTCCTGTAAGGTACTATAGATTTACCACATCCCCCTTTCTTGAC--TCTTTCCTTGACAAACGGAGA-TCAGACTTGTACA-ATTTACCCTTCAATTTTGTTACGCAGCAAGTGAGAAAACTGAGTCCTCGTCAACACAGCAAGTAGCAGTGTCACGCCTCAGCGCTTCCAGCTCCAGCTCAGATTCCAGCTCCTCCTCCTCCTCATCCTCTTCTTCAGACACCAGTGATTCAGACTCAGGCTAAGGGGCCAGGCCAGATGGGGCAGG-AGGCTCCGCAGGACCGGACCCTTATACCACCCTGCCCCGCC--CCTTCCCCCCCTTTGCTGTGATACTTCCTCATCTCCTCCCCCCTCCCTCCCACTGTAGGAGAGCTGGCTCTGCAA-GGGGGAGGGGTGCAGGGACATTTACTGAAGGAGGGACTTAAATGGACAAAGTTAAGATGGAGTTCCCAGCCCCATT-GAGAGTGACCTCTTGGGCATAGAGCCCCCATTCGAAATGACTGGGGCGGGGCACGGGTACAGGGTGAGAGTGGGCAAAGGCCCTGATCCAGGGTTAACCTGAGGCCATAGCTGCCCTGTTCACTTGTAAAGGCCCTGTTTTGAGGTTGTTTGTTCTAATTTATTTTAAGCTAGGTAAGTCTGAGGG--GTGTGGGGCCATGGTCCCCTCGGCCTCCATGGGGAGGGAAGAAGGGGGAGCTCTTTTTTTACGTTGA--CTTTTTTTTCTACTCTGTTTTCCC-TTTTCCTTCTGCTCCATTTGGGGCCCCTGGGGGTTTCAGTCATCTCCCCATTTGGTCCCTTGGATTGTCTTTCTTTGTCTGTTGATTCTAACTTGTAAATAAAGAAAATATTATTCAAATTTTGAGTTACCTTAATAATGTTTGC-TTTGTAGTGTTTCAAAAGGAACGTAATAG-------------AGTATTGAGGAAAGTATTTTTGAAGTGAGGAAAAGGGAAGAGACCTCTTGTGGTTGGATTGCCTTAGTTGTTACCCCAGTAGTAGGCTGTTAGCTGTGCTGATAAGTCAGTTCATCTACTTTTTATAAAGTGAATCCT---AAATAACACTCAGGTTCATGGTTTGTTCTGGTTTAGTGTTTGGTTTTGTTGTTAAGATTCATTTATTTAAAGAGAGCACAACAAAAAAAAATA a score=2450 s hg19.chr6_ssto_hap7 4430117 153 + 4928567 CTG------------------------------TGGCTCATTC-ATGCTTTAACCA-----AGAACTCAAAATTTTGAGGTAGGCTTTAGGTTTTTCCCTGTGGCAC-------TGGATGTGTGAATTTTCTCCTGAGCAGACTTAAA--ATATGAGAAAAGGGTGGGAGGTAGCCG-AACATAAGTACTTTATGCATT s canFam2.chr12 5549845 198 + 75515492 CTGGTTTAAATAGAGGAAAAGCTAAGAGGTGTCTGGCTCATTTGATACTTTGATCAAGTTTAGGATTCAAGG-TTTAAGATGGGTTCTGAGGTTTTTTCCTTTACATAAAATTATGTATGTATGGATTGTCTCCTGAACACACTTGAACCAAATGTGAATAGAATGAAACCTAACCACAACAGCAGGTGTTTTTGTGTT a score=3756 s hg19.chr6_ssto_hap7 4430544 296 + 4928567 GTAATTGGGCCTACTACATTGTTAAACATTG---TTAAATTTTGCTGCCATGGTCACACACAAATTTACAG---------ATAGTTTATTAGTAGAATACTAAAGAGTA-----TTCCAACGATTAAATCACAAAACTGTGCTTTCTGCATACCCCCTTGTCTTGCTAAGGGGAGAGAAGGGTTGTATAAAAAGTTTAGGGGGTTGGGATGTGTGCATTCTGGAATTTGGGGCTTTAATACTGGAAAAGTGAGACAT--TTGCTTAGTATAGTGTACCATAGTAGGAAACCTGGATAGAGACGTGGAAATTAGAA s canFam2.chr12 5550062 269 + 75515492 GCAGTTGTGCTTACT---TTTATAAGCTTTGGCCTCAAATTC------------------CAGATTTATGGCCCTCGGGCACAGTACATTAATAGAACACAAAACAGCAATTTTTTGCCAAATCCAGATCACAATTCCTCTCCATAAATTTAACCCCTTGTCTTGCTGAGGAAAGA--------GTCT----AGTTCAGGGAACTGGGACACGTGGGTTCTGGAACTGGGGACTTAGA-------------AGACATTATAGCCTAGTAAAACAGGCCACTGCAAAAAATGAACTTGGAAGTGTAAGGGCTAGGA a score=4897 s hg19.chr6_ssto_hap7 4430841 341 + 4928567 CAGGAATGTAGTAAAGCAAATGGTTTATTTTGCTGTAAATGACACCACAA------ACTAAGTGTAGGGCAACACC-------------ACAAACTAAATGTAGGAAGCAATAAATTTTACT-----AGTGATGCTCAGCCC----------------------------------------------------------------TCTTTAGGAATTCCGGCTAAACTGGGGCTTGAGCAACAATT-TTCAAAAGCTCGGGAGATGGTAATAAAAAATTAGGTTTGTGAACCACCTGCTACTGTTTGCCAAGCACTTAG-------AGGGA-AACAAACCCTTGTTTGGGCTTTCTTGCTAACTTGTGTGCACCAGTGAAAG-----CTCTTGAGCTCCCTTTGAGCTCTGGTTCCCTTTTGAGAATAACAG---ATGTTGAGGA s canFam2.chr12 5550497 435 + 75515492 TAGGAAT-TGTTAATGTAGAGAAAATATTCTGCTCTGAATAATGTTGCCAGAAAGGAGAAAGTACAGGGTAGAATCTGATTTGGAGATGGTAGTAAAGATTTTGGAATCAATAAATTGGACTGTAGcagggattctcaacccttaccacatgtattagggctccagtaaagctttttaaaaatactgcagtaatttcaactttctgtctttatgaatt----ctaagttgaagcttgggcaataactacccaaaagttcaggagatggtaatgtctcaccagggttgagaaccactgAAGTGTTTTTGGAAAGCCCTTAGCTTGAAAAGGGACAAAGAACCCTCAGTTGGGCTTTTGGGCCAACTTAACTGTACAATTCAGAGAATGAATCTTGGA--ACTTTTGAGCTCTGAT----CTTGAAGAATGATAGAAAAGATTGAGGA a score=16234 s hg19.chr6_ssto_hap7 4431240 1636 + 4928567 TCTGAAAATCGGAGTAAATAGATTTAAGCTAAGTGCATGT-----CTATGTCAAGGATTACATCTCATTTCAGAGGGAATTGAAGGATTTAGTTGGATTAGTT-----TTGGGACAAAATATAGAATATT----TTGTCTGACTGCAGCCCCTTCTGCTCATGTACTTTTAAGGTTTGTTTTCTGTAGTTCGGAAAAATAAAAGTTTCAACC-TGACATTGGAGGCCCCTGAGTACTT----AATTCCCTGTAAATGGAACCCAGACC-GCCCTAAATGCTTTAAGAGAGAGAAGGGCTGGCTGACAC-----------------------------AGGGGCTTCAGACCTGCCTTAAAC----------------------------CAATTGGAC--------------------------------------------TAGTCTC---------------------------TTAATTGACTT-------TAGTTTGAACTTAT-----TTCAAGCC-------TGTCTCA-----CTTAGGGATTGTAATTGTTTCAGGAGTTTGGTTGAGTTCCATCTTGGTTGCCAAAGGACTTTATTCCAAAATAG-CAGTCTCCAGCACAACTCAAAGGACTAGTGGAGTCCTGTGGGCATTATTTCCCCCTATGCTCCTCTCAGCTCTTGGAATCATGGGTTCTATTGCTGCTGCTTTTTCCCTCTCCCCTCATGCTGCCATTTACTGCCTTTTATTGCGTCCATAGGAAGCCTTTTGTTGGGTTGTGGGGGAAGGTGAGAGTCGGTCTTATTTACTCAGTC-ACACATTTATTGAGTTCCCTTGATTGCCTTTTCAGCAAACTGTTAGGCCTGTAGAC---------CTGGACGTTGCCAAGCCAGAGGGTATAAGG-TGAAGATAAG---ACAAGGTCT--TATCATGGAGTTTGCTTAGCACGAATAGGGTGCAATTATTAACCATCATGGTGTGGTAATTATACTGATTGAATCCAAGATATAGGCATGACTTGGTCTTCACAGA----CCATCCTTATT---GTGCACCCATATGTGGACCCCAGTTCCAGCCTGCCTGTAACCTTCCCCAAAGTCCTGCTCTTAGGTTCACTCGGGACTACCTTGATTGGAAGGCCCTGCTTCCATGAGTGACCAGCATGAAGGACTCCCAGGACAAGGACCAGAGGTGACTGGTGTTACTCT-GGGGCTTAGTGCAAGA----CTGGAGGAAGATTTTCCTGAGCAATTAGAGAGTGGCTGTAATGGAGAGCTGGGAAGGAGATGTGGGAATGGTAGCATGGAACTAATGTGTTGT--------------CACCATGATTTCATT---TTTTCCTGGGTCATCACCCTAA--AGATACTCACAAAATCCCACCAGCTGGTCTCCAGCACTGAATGAGACGACAGCTTCTTGCTCTCAATTTATATTCTAGGATCGGGGAAAGGGGCAGCATTAGACAACTAGTCACACGATTTTTAACAAAAATAAGTAATTCTAACAGGACAATGTGCAGAGGTCTAGCAAGAATTTAGAAA-----AGAGGGTTCTCTGGTCTA------------------------------------------AGCTGAGAGC-TATTCAGATATCTCAGAAC-GATGAGTTCCTTCCTGTTTGTAAGGGGTGGATGGGTGGG--------AGCAGG--GAGTAGTGAACATTGCCAGCAGAAGAAACAGC-------AACTG-AGAAGGTAACTAGGTGATGCTGAAGCAGCAAGGATGAAGGTGAGTGCTTTGAGAT--------------------------------------------------GCTTTGAATTTACATCTCAAAGACtaat---agctaacattt-attgagcacttactgtgtcccatgcactgtgctaaataaaaacttaccctgta s canFam2.chr12 5551139 1747 + 75515492 TCTAAAAA--GGAGTAACATGGTTT--GTTAGAGGCATGTATATAATATGTCCAGGATTATATCTCATTTCAAAAAGAATACAAAG--TGAGTTGGATTAGTTGAGGGTGGAGGCTAGCTGCAGAATCTTAAGGTAGTATGGCTGCGTTGCCTTGCATTCGTATACTCTTAAAGAC---------TAGTCTGGGAAAGTGAA--TTTCAGCTATCAAAATGGGAGTTTCTGATGTCTTTGGCAGCTCCTTAGAAGTATAACCTGAACTGGGAACAAGTGCTGTCAGAATGGGCA-GATTGGCTCATCCCCTTGACTGCAGAACCACTTGAGACGGAAAGAGTTTCCAGACCTGTGTTAGACTTCCTACTCTGCCATATCAGGCCATTTTCAAGTGTACATGGATTTCCTGAGACTCAAAGTTTTTTGGTAGAGTCCTTGCTGTGGTCTCTGACCCATAGTTTGGTAAATCTGTCCTTTGATTTACTTTCTCCCCTCAGTTGAATTTTTCCTGGTCCAAGTCCCAGCTTTATCCCATACGCTTTAGGCATGGTAATAGTTTTGAAGA---GGCAGAGTGGTAGCTTGGTT--CAAATTCCTGTCTTCCAAAGTAACCAATCTGTAGCCTAACAGGACACAAATGTGGAGTCCTGTGGGTA----TCCCTCCCATGTTCTTCCCAGCTCTTGAAATCATGGGTTCCACTGC--CTGACTCTT---------------AGGCCATTTGC-----TCTAATGTCTCC---------------------TGTGGGAG---------------CTTTTTTAATCAGTCAACACATTTTACAGAGTTCCTTGGTTGCCTTTTATTTTAACAACCACGTCAATAGACCAGACACGGCTAAGCTCTGCCAAGTC---GAGCATGGGGTTGAAAATTAGAGCACAAGCCCTGCCCTCAAGAAGCTTGCTCTGT-----CAAAGTTGAACTCTTAA----CACGATCCATATATGGTGCTGATGGTCTCCAAGATAAAGGCATGAATTGGTCTTCCCAGATACTTCCTGCTTATTAGAGTATGCCAATGTGTGGATCCCAGTCTCCACC---------CCTGCC----AACCTTGCT----------CTCAGAACTATCTTGATTGGA----------------------------------------------------------------GTTATTCTCCTGGTCTGGCCCCAAATCACCTTGAGAGAGGTGTTCCTGAGCAGT--GAGAGGAACTG----GTAGAGTTGGGTAGGGGA--TGGGAATGGTGGTAGGGAACTGAACTGATGTCTCCCAGGATCTCCCATCTTTGTTTCTTTCCCCTTTACTGGATCCTAAGTTTAATTCAAGCTCTGCAAAACCCCACTAGCTGGTCTCTAGCACTAAATGA---GACAGCTTGCTGCACCCA----------TAGTGTGTGGGA---GGACAACATTAGGTAAT------CACAGTTTTTAAGAAAAA-GTGTACTTCTAGCCTCAC-ACATGTAAAGGTTT-TTATGAGCTTAGAGAGATTTATAGATtttatttatttatttatttatttatttatttatttatttatttatttatttTTGAGCTTAGTTCTTATTCTGAGATCTCTCATCAGATCTGTTCTGGCAGATTTCAGAAGGATGAAGTGTTAGGCTATATCCAGGAGGAAGGGGAGCAAATGAGGCCTGCAGAAAAAATAGTGGAGGTAAACTGCAGAATG----CAGGCAGTgctgaagcaggagtga-aagggtgagtgcttctaggtaagaccagaaaggcagaactagaccaaggagagcagttagccatgataaggatttgaatttttatccAAGACTTTaatcacagctcacatttaattgagtactgactatg--ccaagcagtatgc------acaactcattttgtc a score=23972 s hg19.chr6_ssto_hap7 4432879 877 + 4928567 tcatttggtcctcactataatcctgtgaggtacatcttgtctgcatttaacagataaagaaatgaggcacagagagattagtcaatttgcccaacatcaccacattgtcagtgagcactggaggtgggttttgaaaccaggcgatctggcttcagggtccacatttataactactgcactagactTCCAGTGCTGTGGGCCAGTAGGGAGCTAGGAGATAGACATGCTTTAAGGAAATTGCACTAGGGACAATCATGTTAGGGTTGGTGGGGTGTTGAGAGTGGATAG----------TTTAGAAAGCAATTGCAGCAGTTAATCCCAGCCAGTGAGAATAGTGGTGTAGAAGAGAAAGGCAGCAATGTAGATGAAGAAATGTAGATAGATTTGAGAGCTATGTAGGAGTTAAAATAGATGGGACTTATTCTCAAAAGGTTCTTGTCTCCACACGTTAAAGGAACAGCAGAGCACACGTGCACTTGCAGACATACAGCTCTCAGAGTCCCT---AGCACAGAGCTTTCCAATAGTGGAAGCTTGATATTTTGTTGACTAAAGGAGTGCCACCTGGCTGACTGGCAGATTTGAATGGAGCTCCCTCCAGCATGGCTT-----------GCCGAAGGG-GCAGGGGTTCTGAGGCTCTTGTAGACTGCCACTGAAGGTATTTGGCGCCACCTGTTGGGCGTGTTACCCACGATTGCCTCCTGAATCTATT-GTCATTTTTGTGTCCTGCCCCCGAGGTTAGGTGGTTCTTCCCTTCTTACTTTCCTAAACTTCAACTCTTAAAATGTGAGCCTTCATTTTTATGACCCAGAGGGTCACAAAAGAAGGAGATTAGGCCTTTTTAGTCCTTATCTCCCTTTACCTCTGAAGCATCCCATGGGGCTTC s canFam2.chr12 5553066 771 + 75515492 tcattttgtcttcattatagtcctgtgaagtagatctaatctcc----aacagat----gaatgaggcacagacatgctaaggaactc-cccaaagttgcaacacagctggtgagtgctgg-ggtgggactcaaatcca-gcaatctggctacagg------------aaatactaccctggaattccagtacaacaggctgGTAGGGTCCTC--------ACATCCTTTGAAAAAATTGCAGTGAGAAGGATCATGTT-GAGTTGGTGGGGTGTCGAGAAGGGATGGAGAGTGATTATTTAGAAAGCAGCT-------------CCTACAAATGAGGATGGTGGTTTGGAATGGAGAGGCAGCAATGGAGGTGAAAA---GTAGGTAAGTTTGAAAAT--TGTAGGAGATAGAACACATGGGAC-TAT----------------TCTCCACACACCACAGGAA-------------GCGCAGTTGTGAATA------GCTCCGTATTCCTTGGAGTCCAGAGTGTTCCAGCCCTGGAAGTTTGACAGTTTGTTAACTAAAGGAATGCCAGCTGGCTGACTGGCAAGAGTGAA-GGAAACCCCTCAAGGTTGCCCCTGGGTGTTGGGGTTGGGGGGTGCTAGGTTTCCGAGGCATTTGTTGAGCATCCCAGAGGGTCTTTGGCGCCACCTGGTGAGCATGGTGCCCAGGA---CCTCGTGGATATTTCAGGTAGTATTGTG-CGTACCCTC---------TCATCTTTCAGTTCTTACTTCCCTGTACTTCAACTTTTGAAACATCAGCC-TCACTTTTATGACCAGGAG-------------------------------GTCTTTATTTGTCTTGGCCTCTGAGGCATCCCATGTGGCTTC a score=10579 s hg19.chr6_ssto_hap7 4433973 197 + 4928567 TCCTAGCTCTCATACTTTTCAGACAGCCATTTCTTAGTCTGCTTCTTTAAAGTCTCTGCCTCTGCCTCCCATAATATATTG---TCCCTTATGACACCTTTCTTTGTCCTCTTTTTATTTGCACAGTATTTTTAAGCAAGTTTACCCATTCCTCTGGAGGCACCTCCCACCCATAAAATCTGTGTCTCTGTTTAGACCTt s canFam2.chr12 5553837 193 + 75515492 GCCTGGCTCTCTCACTTTTTAGGCAGCC-TCTCTTAGTTTGCTTCTCAAAAGTCTCTACCTCCACCTTCCATGAGATGTTGTCATCCTTCATGTTACCTTCCTTGGTCCTCTTCTTATTTGCAC---ATTTCTAATCAATTCTACCCATTCTTCTGGAGGCAATTCCCACCCATACAATC--TGTCTCTGTCCAGACC-T a score=3129 s hg19.chr6_ssto_hap7 4434433 122 + 4928567 TGAGTCAAAGTTCCAAGTGCCTAATGCAATGCCTAATGGCAAGGTCCCATAAGCTCGTG------CACACATTTTTAGAAAAGATTCTACCTTTTTCCCCAAACATGTCCCTCGCAGTGAGTTCTCTA s canFam2.chr12 5554030 124 + 75515492 TGCTCCAAAGTTCCAAGTCTGTTTTCAACTGCCAAATAGCAATGTCCCAGGAGCACCTGGCACTCAGCATATGTCCAACAACGATCCCATCCTTTCCCACATAGATGCCTCT----GTGAGTTACCTG a score=7974 s hg19.chr6_ssto_hap7 4434877 273 + 4928567 TATAAGGaacaagcacttatatagagtttact-atgtaccagacacttatgagcacttttgcaatttagtcttcataataatcctaagaggtaggtactcatcaccattttatacatgaggaaacaga--CATTTAGTAACAGTTCTATAG---------------------------------------------------CTG----------------------CCTAGTTTCTTCCCCTTATTCTCCCCCAACTCCCTGTTCAGCCATTGAGGTCTGTTGAGCCTTCCTCTGTCCCTTCTC-----TCAGTGC-CCCTCATCAGCCTGGACTCTCACACGACTCTG-TCACT s canFam2.chr12 5554154 353 + 75515492 TTTATGGAACAAGCAATCATACAAAACTCACTAATGTCCTGGACACTTACAAGGGCCCTTGCCGTCAagtccttccaagaacactaggacttaggtacccagcacacttttatagatgaggacacagagctatccaggaacagttctacagtaaacaagtggcacagccaggattaTTAATGTACCACCATTCCCTTAGTCACTGGAGCCAGAGCCTGGTGATCAGTCCAGATTTCTACCCCTCACCCTCCCC---TTCTCTGTTCACCCATCAAGGCGTGTGGAGCCTTCCTCCATCACTTCTCTCCTATCAGTATGACCCCCTCAGActggactatcacaactccctgctcacc a score=24445 s hg19.chr6_ssto_hap7 4435150 742 + 4928567 AGTCCATGTCTTTCAGCTATACTGTGTTGTTTCAGGGC-CCATCACTCACCT-CTCCCTTCATGCCCTGCCCTATCCCCACCACACCAGTGAAGACCTCCCTTCCTGGGTTATCAT-CAGACCTGTCACTTGCAGTGAGGCCTCACCTCAAC-TAAGGAGGTCAAAATAAGAATAACCTCTCATGTGAGTAAGAGGAACTCATCATCCTTGCCAAGCTTTCCAACCAACCCCAAACTTCAAGTATTTTTGTGTCCTTGTACAGTAAGTGAATATTTCTACATAATAAAATATTTCTTTCATCTCTTTGCCAAATGAGGACCTTGCT--CATTTTGTCAGACAAGCTAATGTTTGATTTGAGATTGAAGGAGAAAAGGGATTTATTCTCCAGCGATAAGCATTTTTGCT-GGTGTT--TGACAAACAAAAAAAGAGCAGTTCTTCTATTAGCTGCCACTGTCAGACCTCATGGAGTCAGTTGCTATTCTAATTGCTGAGACTATGAGAAGGTAACACTGGTTAATTGATGAATACTTTCCCCTCTTCTGCCCCTGCAGAAGATGTGTTGGAACTGGC-TTCTCTATGAAGGCAGGTTGTAGAGACA---ATGACAGTTCTTCCAAGAAAGACAGTTATTACCTTGTCTTCCTGCATGGT-TTTGTTTCTCACCCAGAGTTCCTGCAAAAAAAAAAAAAAAAAAGAGACATTTTGCAGTTTCATCTACCGATTTTCTCCTCTCTCTCAAAAATAATGt s canFam2.chr12 5555689 630 + 75515492 AGTCTGTGTCTTTGTGCTGTACCATGTGGTCTTGGGGTTCCATCAATCACCTTCTCCCTTCATGCCCCGCCCTTTGTGCA----------GGAGCCCTCCCTCCCTGGGGTACCAGGCAGGCCTGTCACTTGCAGTGAGGCCTCTCATCAACCTAAGGCAGCCAGGATAAGAATAGCTCCTTGTACAAGTGAGAGGAACT-----------------------------------------------------------------AGCAAACACTTATACGTAATA-----TTCCTCATGTGCATCTACCAAACAAGGACATTGCTAACACTTTGTCGGCTAAGCTAATGTCTGATTTGAGGTTGGAATAGAAAAGGCATTTATTCTCCAGGGATACGAATTTTTGCCAGGTGTTGGTGTGAAAGAGTTACTAAAGTACTCTTCGACTGGTT-CCGCTGTCAGACCTCA--GAGTCAGCTGCTGTTAGGATTTCTGAGACCATGAGAATGCAACAGAGCCCAATCAATGAGTACTTTCTCCTCCTCTGCCCCTGCGGTGTGTGTGTTGGAACTGGCTTTCTCCGTGGAGGCAGGTTGTAGAGACACCTCTGAAAGTTCCTCCAGAAATG---GTTATTACC-TATCCTCCTGCCTCGTCTCTGCGTCTCACCCAGAGTTGCTGCAAAAGGGAGA--------------------------------CGATTT-------TCTCTCAAAAAAAATGA a score=3085 s hg19.chr6_ssto_hap7 4436181 133 + 4928567 CACCCAAAAATAATTGTTTTAAAGCAGTTCTCAAGGTTTTCTAAGTTTACTTATA---CTCTTTTAACTCTTAAGTAACCCCAGGTAAGTGGAAGCTGAAAAGTTACAAAATGATAGTTACAAGGGCCAAGCAGTC s canFam2.chr12 5556319 112 + 75515492 AAACAAAAA-----------CAACCAGTTTTTAAGGTTTTCTAAGTTTGCACGTGTGCTTTTTTTAACTC-----TAACTCCAGGGCAACAAAAGCTGAAAAGTTAC--------GGCGATGGGGGCAAAGAAGGC a score=1506 s hg19.chr6_ssto_hap7 4436314 51 + 4928567 CTGCATCCCTGTCAGAGTGAAACTTCATTCTCTCTGATGCAAAATAAAATG s canFam2.chr12 5556649 47 + 75515492 CTCCATTCCTATCA----GGAACCTACTGCTCTTTAATGGGACACAGAATG a score=1690 s hg19.chr6_ssto_hap7 4443813 54 + 4928567 ACTAGGCTCTTCCTTTTGCTAGAGCTAGGACATATA--TATTAGTAAATCATTAGT s canFam2.chr12 5557070 56 + 75515492 ttcaggttctctcagccactggaactaggagatacacatatttatacatCATTAAt a score=3492 s hg19.chr6_ssto_hap7 4443867 110 + 4928567 TAAAACTGACATTTCTAGTTCAAAATATTTTTCTAGTTCAAATTTAATATTATTGTTTTAATTCAACTACGTTTACTTGCTTTT---------CATACATTAAAAATCTCAGTTCTGAA s canFam2.chr12 5557301 96 + 75515492 TAAA--------------TTCA-------TTTCTAATTAAAATTTAATATTAGTGTTTTAATTCAGCTACTTTT--TTCCCTTTAAAAGTAAAAAGACATTAAAAGTCTCAGTTCCAAA a score=17957 s hg19.chr6_ssto_hap7 4445400 438 + 4928567 tcacatccagtggtaatatcaatgggttgttgttgcttactttttaaaatctgtattcgactattaataggaacccatggatttttatatactcaatgtgtttaattatattatagtcatctttttgatgtctgagttgttccagttttggccaatgga-agctccttcaaactggctgacctgtttttttgacatgactcta-ttagtctttgaacagtgccttgttttatgaaaacaatgagatactcacacttgctttgtattttccataactcaggcctggaactggtcacttctccaagaagctctatttcctttgagtgggaaatgatatttacacactacaatctgtgcattgaggatgctcattgctacagggct----------actattaggctctttcatttgctggagc--agggacatatatgtTAGTAAATCATTAGT s canFam2.chr12 5556696 430 + 75515492 TCACATCCAGTGGTGACAGAAAAGTGTTGTTGTTGCTTGTTTGTTTTA-TCTCTCTCTGCTtattattagggatttgtgggctttcatatattcaacatgtttaagttgattatagtcat-tttttgatgctcaaattcccccaaatttggccaatggggaacctcttcaagctggctgctcttctcttttgacatgcccctaattagtcttagaacacttcattgtttgctgaaa-------------caaatttgctttgtattttccctaacccagacctgcaatcagtcacttctctaaaaaactccatttccttttattagg------tatttagaaaccacaatctgtgcactt-ggatgctccttgctactgaggtttcctgtatcactttcaggttctctcagccactggaactaggagatacacatatttatacatCATTAAt a score=2718 s hg19.chr6_ssto_hap7 4445838 85 + 4928567 TAAAATTGACAGTTCTAGTTCaaatattttttctaatattattattttaattCAGCTACTTTTACTTGCTTTTTATACATGAAAA s canFam2.chr12 5557301 72 + 75515492 TAAATT---CATTTCTAATTAAAAT-------TTAATATTAGTGTTTTAATTCAGCTACTTTT---TTCCCTTTAAAAGTAAAAA a score=3158 s hg19.chr6_ssto_hap7 4446241 83 + 4928567 AAAAATCTTAGTTCTTAATTATATTA-AC--ATAATCACTGATTTGCTTTATTTTATATATAGTATAGTTTCAAA-TAAGGATACAA s canFam2.chr12 5557614 83 + 75515492 AAAATTCTTGGTTCCTAATTACATTACACTAGTAATTACTGATTGGttaa----tatacataatataatttcaaaataataatacaa a score=4105 s hg19.chr6_ssto_hap7 4446324 80 + 4928567 ATATTACT--------------TAACCATAAAACAACTGAATGATGTTCAAAGTTCT-GATAGTTCTTTTTGTCCTTAGAATATATTCTATTAAG s canFam2.chr12 5557884 95 + 75515492 AtattattattattattattattaACAGTGAAACTACTCAATGACATTCAAGGTTTTTGGTAGTTCTTTTTGTCCTTAGCATATATTCCACTAAG a score=3508 s hg19.chr6_ssto_hap7 4446695 122 + 4928567 CCAAGAACATACAGTAGTATCTTTTAATATCACTTGGGATACTTATTTTTTCTGTGTGGTTCA----GTTCTATTTGTTTTAAATTTTAGAGGTTTTTGTCAATTTTTTATTAACATTGTAAATTA s canFam2.chr12 5558058 120 + 75515492 CCAGGGATCCCTAGTACTGTCTTCTAATATTAGTTA----AACTCTCTTCTTGGTGTAGTTTACTTGTTTCTGATAGTTTTAAATTTTAGGGtttttta--aaatatttataaaaattGTAAAGCA a score=3894 s hg19.chr6_ssto_hap7 4446817 110 + 4928567 TTTATACGTTTCAAAGGTCAATATTCACttctcacttctattctccc-------ttccttc------------ctaaaagtagccatttttattaatttcttg-tttatccttccaatgcagcttttttc s canFam2.chr12 5558573 126 + 75515492 TTTATATGTTTCAAAAGTCAATATTCA-TTTTTATCCCTGTTTTCTCAAAcccattccttcaattcttattctcccaactt---catttttaccaatttctggttttatccttctagtatggctttttgc a score=5782 s hg19.chr6_ssto_hap7 4447234 126 + 4928567 aaatatgtatctttcctctttcttaccccaaaggcagtacatagttta-atcattgtattgcactgtgaattttccactctaacctagagattcctccgtattagttcaaagagatctttctcattc s canFam2.chr12 5558699 125 + 75515492 aaatatatatctctgttctttcttaccccaaaggtagcacatactatatataattcctttgtatgttgcattctccatgacatcctagagattcctccacaggag--caaagagatcttccttgttc a score=821 s hg19.chr6_ssto_hap7 4447518 11 + 4928567 tggcaacatct s canFam2.chr12 5558824 11 + 75515492 tgccaacatct a score=4738 s hg19.chr6_ssto_hap7 4447637 164 + 4928567 ttggaacttattttttctatctcctcattctttttaacagctttgcattac-tccattgtgcagatgtactataattttttcaactattgtactcttactaggca-tgtttccaataattttcaattgttacaaataatgacatatcatttttaaaaggcagatta s canFam2.chr12 5558835 133 + 75515492 ttagag----------------------------taatggtatggaagtacttccactgtgtggaaataccatagctttttcaactattccactcttactagatattgttaccaat--ctttcac---ttacaaaaaatgACATATCAGTCTTAAAAGGCAGATAA a score=10564 s hg19.chr6_ssto_hap7 4448127 275 + 4928567 taaaatatgttttaacagaaaaatattacttctattgatttgtttttggttaggttattaacactctcctaaacacttcggtttcatgcaacaatttaggaaatATCTGGTGTGCTTCTTAGTGAATGTGGAGA-TACTGgatttgacaaatatcagttggttagactagtgtttggcacattggaagtgctcaataataatagtcaatactattatGAAAGATAATAGTATTAACAAAA-CAATACTTGTTAATATCAGAAAAACAAATTTTAATT s canFam2.chr12 5559225 258 + 75515492 TAAAGTATAATTTAGAAGAAAAATATTACTTGTGTCTATTTATTTTTAGTTCAGTTTTTAGCATTCTTTGGAATACTTGAATTTCATGGAACAATTTAAGAAACACCAGGTATATTTCACGGTGAGCATACAGACTAATGGATCGGACAAATGTCAGGTCTTCAGACTAGTGCTTGGCACACTAACAGTGCCTAATAA-----------------ATGAAGGACAATCATGATAATAAAAGCAATA-GTGTTAATAACAG-CAGCCACATTTTAATT a score=32195 s hg19.chr6_ssto_hap7 4449394 749 + 4928567 ACAAGCTGGTCTCCATTCGCTGCTgagtag-gacagtgcagtggaaagaacatgggctctagcatcacacagaccttccaa-ccacctcctagctgtttgaccttggg-caagttaggtaatttg--aatcctagcttccttctt------tataaaatgaa-atcattatacttaacttgcagattggtcataaggaagaaatgaaataattcatgtaTGGCAGAATGATGCTTTTCTTTT-----TCCTTTGTTTGTATTTaggtttgtcacacaagacaatagcacatgtcaccgccaaggcctttcctcttctggctttggatttcccaaaatctgaagctcacttgacattatgccaggtgtcccagacattgtgccag--agagagagaggggaatgcctttga-------------caggcaaagggggaaggttctcccaaactgaggaaggcacagtggcctgtgggtct-gaaagagccctgcttccttgcagcagccaaggcaggtggggaggcctcccagggacggggaagttggccgtatggtgcatctttgcagtcctgctcccaggcactggggatcactcctcactaaagattcccctgccccaagcctagtgcagaagcagcagagcttccacttggaaaagagcat----acaggttaagccctaggcatgcttggagtaaacagtctggactggag-aagacaacaggg-gcttctccaaggcctcagcactgtgtcagggcgcagacccttggaacaactgtaagaga s canFam2.chr12 5559483 773 + 75515492 ACAGGCTACCTTCCACTAGCTCGTgagtagtgatggttcagcagaaggaatttgggctcctgcatcacacagaccttccaggccaccttttagatgtctgaccttggggcaagttgtataatttttcaaccccagtttccttcctcccctgtaaaaaatgggtataattattctaactttgcaagttgattgtaagaaagaaat-----aatacatg-gtaaagGAATATTGCTTTTCTTTTCTTTTTTCCTTCTCTGTACTGAAGTCTGTGATATAGGGCGATGGCAGATGTCACCTCCAAGACCTCTCCTCTTCTGGCATTGAATTTCCCAAAGCCTGGAGCACACTGGACATCACGCCAGGCGTCTCAGACATTATACTAGGAAGATAGAGAGAGGAATGACTTTGAGAGGCAGGGAGGCAAGGCAGAGAGGGTAGATTCTCCTAAACTGTGGAAGGCACAGTGGTGGGTGGGTCCCGCGAGAGCCCCGTTACCCTGCGGCACCCAAAGCAGATAGGGAGGACTCTAGGGAAAAGAAAGGGTGTCCATCTGGTGCATTTGTGCAGTCATGCTCCAAAGCACTGGGGCTCACTCCTCACCAAAACCTCCCCTGCCCCCTGCCTGATGCAGAA-CAGCA-AGCTGCCACTCCAAAAGGACTATCTATGCAAGCGAAGGCCCAGGCATCCTAGAGAGCGCCAGTCTGAACAGATGTAGGAAGACAGGGAGCTGGTCTAATGCCGCAGCGCTGTGTCAGTGC-------CTTTGAAAAACCATGAAAGA a score=15392 s hg19.chr6_ssto_hap7 4450400 432 + 4928567 TGCAGA-CAGTCGGACCAGGCTGGATTTGAAGCAAACAAAATTGAATTAAATAGAATTCTA-CAGTGTttcaatgcccattatgttctgg------------gtgttggaactataagacacagccttctcttgctttagaggagcagttagt---ggcaaaggcaaattcatacacagtcaa--ctgacacagggcggaatgtggtatgcactgcagggacagggtggccagcatattgggggctgggattgaaaatgcttcacagaagaggtgacatttaatctggac-cctggaaggacaggtagaattttgactggttggtggaggaaggcaggtccagcacagagaatagtttgtgcaaaggcagggaggagtaaacatgcgacAACAGTTTTCTGTGACTTAAGCATTGATCATTTTCAGGAGGAGCTATTATATGGTTAAAATAg s canFam2.chr12 5560437 433 + 75515492 TGCAGAACAGTGGGAATAGGCCAAATCTGCAAAAAATAAAATGGAATTCAGTAGAATTCTACCAATGTGTTAATGCCCAGTATGTTCCAGATAAGAGGTTAAGTGTTGGAAAGATGAAACACAGCCTTGCCTTGTGATAGAAGAGCAGCAAAGGAAGACACACACACGCACACACGCAGCTAACTCTGACATATGGCAGAATGTCATAGATCCT--AGTGAGAAAATGGGCAAAATATTGTggcctgggattaggaaggtttcac---agaggtggcattgaatttggactccggggaggacaggtaaaatgtt---tggttggcagaggcaggcaggtccaa-gcagagaacagtatgcgcaaaagcA-GGAGGTATAAACATATCTTGAGAGTTTGGTGTGACTT-AGCAGTGGCTGTTTTCAGG-GGAGCTACTA-------GGAATAA a score=7663 s hg19.chr6_ssto_hap7 4451143 219 + 4928567 GAAAAAGAAATACCCTGAGGACAGTTTGAGAAGGGTCTTCATCTTGTAGGTAATGGAGCACCTATAAGAATTTAAA---GGAGGAAgggaaaaagcagatatcctataagcttctgagagaaaaaaacaacaacgattacgtacaaagtttcatgacac--aatatcttttggattatcaacaataacgcaggaagctaaggga-ttatagagaaatgccttaaa s canFam2.chr12 5560870 197 + 75515492 TGTTAAAAAGTAGATTGAGGACAATTTGAGAAGGATCTTCTTCAC---------------CCCATAAGAATTTAAAGCTGGAAGAAgagaaaaagaaaatagcctaaaagcttccagaaagaaaaaacaaca--gatcacatac-aagtttcaggactccaaatatcttttggcttctcagtaataatactggaagctaaaagacTTATAGGG----------Aa a score=33591 s hg19.chr6_ssto_hap7 4451362 780 + 4928567 aattctgatggaaatgatttccaatcttgaattttataaccgtggaagcta--ttattcaagtgtgagagtagaataaatatattttccgacatacgaagcataaaaagttttcctcatatgcactgtttctcaggaagtggaaagaagaggtgcctcattaaaataaggc--agaccacaaaagggcaatgactggatacaagaagcagaagatccaactcggaggataggtaaatcctgacgaggatggcgaagagtgatctcagagtgaccgctgtatcatcaagggcaaggagttaagaatggagcagacagaaggttctgggagagttatatctggtgataaaattgacagaatacctgatgtgtttgattgtactgtgaggaattttgtgattcattaataataagtacaaatacagccacacaaag-gaaaacaggacaactatatactccagagaaaac-gaagtcgtctagaaaaggaagagtgagcatggcttgctctatggtttg-----------ccattacatggtcatattgatagaaacatagtaaacacagtaacttttactatattgtaaaaattacaat----atagtcacattaaaaga-aagggcatgggaaagggggcatg-atgttctttgaggatgaaaaaaatctaaatccccctcttccacagcaggaggtaaagagataaagcctaaagctgaaaaatctagatgtagcaacacaaacatgttatttagagatgggaggttaataccaacaaaacatatt-agaacaattgaaagtta s canFam2.chr12 5561232 754 + 75515492 aattctgatagaaatgattttaaatcttgaattgtatgccc----aacttgtctcattcaagtgtcagagtagaataaatcaattttctgaaacgtaaaacataaaaa-tgtgccttttatgcactctttctcagagagctaaaagaggatgtacttctgcaaaataaagcatagaccacaaaagggtaattactggatttaagaaacagaagctgccgcacacaggacaggtaaatcctgccaaggatggtgaagggtgatcccaggatgacagccatgtcactgaaggcagctggttaagaatggagcagacggaaggtggtgggacagttttatctggcaataaaatgggc-----------------tgattgtgttgtaaggaaatttgtcattcattaataataagtacaaacaaagccaagcaaagagaaaacaggataattattcactccagggaagacaaaagctgtttagggaaggaa----gagcctggcttactctgtggtttgactgcacataacttttacgtggtcacagtaatataaacac--tgaacactg-----------acctagccagagcgaccatctaactaattgtactaagggatgacagcaccag-aagagggcatgtgtgtggtatgaggatga---------aaatcctcatcttccacagtgtgaggcaaagagagaaagcctaaggctgaaaaatcaagatgtagcaacacaaacacatgatttagagacaggagg-taataccaacagaatcgatcgaaaacagttgaaagttg a score=4418 s hg19.chr6_ssto_hap7 4452153 83 + 4928567 ggtgaggatatggtgggagatggggctggaaactggtatttctgtagcaaatattgtagaaatatttgactctttaaactata s canFam2.chr12 5562200 82 + 75515492 agggaggacatggtaggagcaggggctggagactagatgttttgggg-aaatcttgtagaactatttgactctttaagctata a score=8236 s hg19.chr6_ssto_hap7 4452256 262 + 4928567 aaaACCGAAAGagagtggatgggaagaggggatctggaggcagtccac---gtagacactctcagagagcgtgaccaggagcttg----ggtggaag-ggagactgggt-------caagga---------------------------------------cagacagaggatttgatgttcttgttatataggagagatgacatgcttatgatttgtaggatgaccctgcaaaaagggagagtttggatacaaaggacaggaga---ctactggatgtctgttctaaaagagagtgaaa-------gatcaagaatgcaggagga s canFam2.chr12 5564365 321 + 75515492 AAGAAAGAGAGAGAGAGGATCAGCAGAAGGGATCTGGAGGCAGCCCACCCAGAAGACTCATTCAGAGAGAATGGG-AGGATCTTGCAATGTTGGAGGTGGGGGGTGGGTTATACAACAAGGAGGAGAtttatttattttttattttattttattttattttTAAGGAGGAGATTTAATGTTCTCAATATATGAGAGCCATGATACG----TCATCTGTAGGGAGAACCTGCAAAGAGGGAGAGTTTGAAAATACAGAATAAGAGTTATCTATTGAATGTCTATTCTGAGAGATACAGAAAAGGATCAGATCAAGAATATAGAAGGa a score=44217 s hg19.chr6_ssto_hap7 4452539 1165 + 4928567 agACTACGTACCTTGAGACTAGAA-ACAAATGTGAGTATACACGCAGGTGCATAAATCTAAAAGCTCTGGAATTACTCCTAGAAGTTCCAGTGACTTCAGGGTAGTATATGCAACAGTAAAAAAAAAGCATATTTCTTTAGTCAAAAGAACACAATTTTAATGACTTTATCAAGCCTTAGGACAGAGATGAGAGAAACACCTTT-CCAATGATGCATCAAGTTAACGTCTAAGCAAAAGATCAGCAGAGATCAGAGATTGTTGGGTACACACGTATCTTGTGATGTCTTCTGAGAACCAACTTATTCCTCTTTCTCT---GAGAAGAACT--TGACCCCTCGCCCCGGGGCTGAGTGCTTGGCAGCCACATTTGTGT-TGAGATCTT--GATTCCTGCTCTAACTACACAGGGCTGGGATGGACACCTGCTCCAAGTTTGGCCAGTCATTTATTTTTCCAGTAATTTAAAGCTGTGACTAGGAGACACAGCCTCTGTGGGTTGTGAGGGTTGAGATGATATAAACTCAGGAGCTGT-----CGGGTGGACATGTTCACTGAGAAGGACAGTCAGTCCACAGAGAGAGAACA-------------CCGCTAACATGCAGGGGGGTCTAGAGAACACAGACCATGTGGATCCGAGAGTGTTGGAGGGGCAG------------CT-----CTAGCTTCTCTGGGCTTTTCGGATCCGAGTTCTGTT-CCTGGGAGGCCTGGCTAAAATCTACCCTTGGGCCCTGCACTCCTCCCC-ATGGCTATATTGCAAATATCCTATACTT-TGCATGTGATCACACAAAGAGGGTTTCTGTTACTGGCACACAAAAAGTTTGCCTGAGATGATTTTCCTCCACTTCCATCAGGGTCTTCT---GGTCATTGATT----TCAACTTATTCCCTCTTAAGAAGCCCATTGAGTCCCCATAATCTCTTGGTTTCTTTCTTTTCCAGGACCAACTGCTCACAGTTCAAACCCTCATTTTGCCTCTATTTACTTGTACCTTGATTGGCT--GATGCCCTAACAGACCCAGGTTCTTCAGAAAGCCTTCCTAGTCCACCTCAGACCTTGGGGATCCCCCTTTCCCATGACCCCCGATGGCACCTGATTACGTCACTGGGTTCCAGTTACCAGACCACAGCCAAGGTCCAGGATGGCtgcatcagagtcatccagagccggttaaaaatgacagcct s canFam2.chr12 5566918 1146 + 75515492 AGACTGTTTACTCTGAAACTAGAAGAAAAATGTGCTTATGAAGGCAGATAC-TAAATTTAAAAGATTTGGAATTGTCCCCTGAAGTTCCAATGACTTCTGTGTAATACATGCAA----AGCAAAAAAGTAGACTTCT--GGTCAAAATAAAACACTTTTAATGACCTTATTAAACATTCGAACAGTGATCAGAGAAACATCTTTTCCAAGGATG-ATCAAATTAACTTTTAAGCAAAAGATCAGCAGAGATCAAGGCATGTTGGGGTCAAACATATCTTGAGGTGTCTTCTGAGAACCAACACATTCTTCTTTCTTTTGAGAAATGATCCAACAACCCCTTTCCTCAGAGGGG-----------------TTTGTGCCTTAGATCTTCTGCCTCTGGCCATGG-TACATTGGACTCAGATGGACACCTGCCCCAAGTTTGGGCATTCATTTGTTTTTCCAATAATTTAAAATTGTCACTGGGAGATAGTGCT-------GTTGGGTGGGTTCAGCTGA----------GGTGCTGTGGCTGCGGGCGGACATGTTAGATGAAAAGGATAGTC----CACAGAGACAGAATAGATATGGCTAATGCAACTAACATGCAGAGGG------ACAACACAGGCCATATGGCCCAGAGAGAGAAAGAGAGCAAGAAAGGATATGGGCTATGGGCTAGAGTCTATGGGCTTTTCAGTTCTGAGTTCTGTTGCCTGTAAGGCTTGGCTAAAATCCACCTTTGGGTTCAGGGCACCACTCCTGTGTCTTTATTGTAAATATCCTCTGCTTACATCTGTGATCATTTTAGGAGGGTTTCTGTTACGGGCAAACAAAG-GCTTCACTAGGACCACTCTCCCCC--TTCCAACAGGGTCTTCTTCTGGCCGTTGATTCCTTTCAACTTACTCTCTCTTGGGAAATCTACAGTGTCTTCACGATCTCTTAGTTTCTTTCCTCTCTATGACCAAAC-CTCACAATGCCAAACC-CAATTTGCCCCTACTTACTTGTATCTTCCCCAACTCCTATGCCCTAAAAGACCCAGGTTCC-CAGAAAGCCTTCCTGGACCACCTCTGAACTCAGGGATCCATTCTT---------------AGCATCAGGCTATGTCAGTGGGTCCCAGTTATCAGATCACAGTCTAAGTTCAGG-tggctgcatcagcaacatctgg-gcttgtttaaaattgcagact a score=2536 s hg19.chr6_ssto_hap7 4454001 51 + 4928567 gttgctgccccctgcactc-ccgagattctaattcagtaggtctgggtgatg s canFam2.chr12 5568064 52 + 75515492 gctaccactctcctcaccctccaagattctaattcagtagatctggctgaag a score=186396 s hg19.chr6_ssto_hap7 4454377 4616 + 4928567 cctgtacttttaaaa-ggatcccaagcagttcttatgtgcattctggtttgaaaaccgtaatctgTATTGCTCATTTTGGTCTTGACATAAACTATGTGGTATGGTGATTTATCTCTTTGTATGTTTTAAATTTTGTTCACAGAAAAGTAGACCAAAATCTTCTAGGCCACATATTTAGAATGTGTCTAGGTGGACCTCCCCTCTTACGAGATACCTTGCAGACCGACTCTACCACCTCCTACCTAACATGACTGACTCCAC-TGAGGGAAGTGGCCACCTTATCCAAGCCTTGGGCCTCTCTTTATCATGCATGGGACTCTAGGGAAAGTAGAAAAAGGAGATAACAT-------CATGGCAGGATACCAGTGGCCTCTTCAT-ACAGAGTAAACCCAGGCAGGAGTGGAGTCCCCATGAGCCTGTCTTGTCCCAGCACCCTTCAGAACTGTTGTTAGCTGAGGGGGTCGTGAGGAACAGGATAATCTGCATCCCTTTCAGGGTAAACCTGAACTCAGGAGGCAAATTTCATGAAGTCCATGTGAAATGGCTCATTCACAAAGTAACACACAATGGG---CCAAATGGAGCAAGACACACCTGTGTGGGCCCCAGGACGGCTGCCAATCCCC------------------------AGCACC-----------------ACATGCCTCAC-CCCTGGAAGAACTGGCCAAGGCCTG---GAAAGGACACAGTGCAAACACCACCAAAGCATTTAGTGCTGCCAGCCAGAGCTTTGGGTAGAGCAAGAA---------------------------------------------TGTGTGTTTGTGTTGAA--TGGGAAGGGAAGCTAGTAGGTGTCCAACAAACCCTGCCATGAATACTGGGGCCAAAAAAGAGGG--GACCCGTAGGACAGATGTTGATCCCACTCAAAGTCAGCACAGCGG-GATGCACTTAA------AGGGCACTGAGCACGCAGGGGCTGTCACAAACCCATGAGGA-TCTGCAGGGTGTCTCCCACAAGTCATTTCTCTCAGAAGGATCATTACCTAAAATAGCAGAAAACATACGATCGAGGTTGCTCAATTTCAATATGCTGGGATCCTATCTCTGAGTGCCCACCTCCCCCAAAACCTCACTCTCTCACCCCACCTCTGCTTCTTTTCTCCCTGCCCATTTCTTTTCT----------------GACTTCTTTCCCCACAACAGAATCTCTGATTCTCCACCCACGTCCTGTTCAGAGTCATCCACTTTCCTCCCCCACCCCCCAGACTCCTGGGG-CCTCTGCACCTGGGGACACTGGACACATATGTGCCCATGATGATGAGGACGGTGCCCACGAGGAAGCCCACCAGGCCGATGGCCAGGCCCAGGGCACAGACCAGGGTCTCCATGGCATCTGGTGGTGGAATAGGCACCTGGAGCTCT-AGGAGAGAAAGGAAGGAGTCGGTGGTATAT-GAAAGGATTCTAGAGTAAAGGAAACCTGGGGCCA-GGAGGGTGCATGGGGAGGGGGCTCCGTACCCCAATGCCTGAGGAGTGGCGCATCCAGGCCCCAGTGCTCCACCTGGCAGTCATAGACGTCCTCGGCTGAGGGCACGAAGGGCAGGTAGTGGAACTTGCGGAACAAATGGTCAGGCTGGGAATAGAAGCTGGTCTGGGCCACTCCCTCAGTGACAGTTTGGCCGTTGCGTAGCCAGGTGATATTGATCACAGGGGGGAAGATGTTGTCCACGATGCAGATGAGGATGTTGGGCTGGCCCAGCTCCACCCGAGACTTGGGGAGCACGGTCACCCGTGGAGGCACTAGGAGGAACG-GGCCCTGAG-TCCACAGGCTCATCCCTCACCCCAGGGCCTTACTAGGACTGGGATTAAGGGACG-TTCCCCCTTTGTAGCCATCTGTGGGCAGGGGATGCTCTGGG--GTATCCACTGGGGCAGGAGAGGAGGGAAACAGAGGGAGAGGAGACTGGGGAGGGAGTGGGGACGCCAGGAGCTCCTATATTTGACTGGTCCCCGGGCGGGAGTCCGGGTGAGAGGTGTCATTCCTCAAGGAGAGGG---GTGCCAAAGGGGTCTGGGAAGACCTGGAGCCTCCTGGGAAAGAAAGGAACAGGGCATGACAGGCGCGGGCGCTGAGACCGCGCCCCAGAGT-GATGGGAGCCTAGGAACTGGGAGGAAGTTTCTCTGGACCTTCC-CGCCTG--ACTGGGTGG------------GCAGAGGGAGGGCCGGTACCGTTGATGGCTCTGCTGCGGTTGGAGCGCTCCACCAGGATGTCCAGATGGGCTTTGATTGCGGCGATGCCGGCCAGCCCGCCCTGCGGGTCAAAGCGGGCAAAGTCACCAAACTCAGGCAGACGCCACACGGCCTCGCTTTTCTTCAGGTCCACAGAGAACAGCTGTTCCTCATCAAATTCATGGGTGAACTGGCCCGAGGCGCCGTAAGACTGGTAGAAGGCGGGTCCGTAGGAGCCCATGTGGTCAGCTGTGTTTGGCGAGTTCAGGGTCAAGGAGAGAGAAAAAAATGTGTCTGTCTCATCCACAATATGTGAT-TGTTGAGTCCCTGAGCCTGGGCCCCGTCCTGGGTTCTGTGTGGGGACAGAGTC-----------CTGTTCT---GACACTGG-------GCTGGCCCTGGGAGAGAGAAAGGGAGAGAGAACAGGAAGAAAGAGGCTCAT-CCCAGCACACTGCAGTCGGCACAGAGAC---AGTGCAGTCTGGCATATCAGGATGGGAAGAGGAGGGACTGCCTAAAATCATGCTTGGGGTTCCAGAATTTAAATCTTGGCTGTGGTCATCTGCCCTGGCTGTGTTGTCAGGCCCTGTGTTGTGAGCTGGTGGGACTGTGGGGGTGGGATGAGGAGGAATGATTAAGGACAGGAGAGTA--TGGAGCTTT--GCACAGAGATGCAGTGCAGGTGGGTGTGAGGGGA-AACAGGCCACGGCTGGCAGGGGTAAGAATTAAGGTTAGTGACCCAGAGACCAAGGGGATAGGGAgaggcaactcaaggcattacaaagagcactggacgaggagtcagaagtca-----aggttcatgtcccaattcctccatctcagagcattatgacTGAGTGTGGCTC-TTCCATAACTGTTGTCTAGTTTTCTGGAAGTTAGGGATTAAGTTTTAATT---------CTTGTAGAACTCTATGAAGTTGTTTGAGCAACAGTTATTGAGGAACTAGCATGCACCCAGCACAATGGTGGG--CCAGGGAAATAAAAGAAAAAAAAGATGAACCATCTGTAGA-CCCGCACCCC---AGCTCATGTCTCCCGAAGAACAAAGACAGGTAAATAGTTAACTACCGGCATGGGCATAAATACTGCAACAGAACTGGACTTGATCGGGCACATTCCCGGCCAGG-GGTGGTAGAGAAATCAGGGTGCTTGCTGGCATCTGTTGGGTGGAGGTTTGGGTCTCAGGAAGGAGGAAGGAA-TGAGGAGAAATCTGAACGTCAGCAAAGGCTGACTGGGGCACCTGCGCAGCTGACCGAGCTGCATCTTCA--TTTAGGTCCAGAGTGGATGTGACAGAGATGAGGGGGATTGGGTGTCTCTTGGTGAAGGAAGTTGCCCATAAACCAGAGAGCGAGAGGAACAAGCATCC--TCCATGCCACCTCCTCATGTAACCCAACTCCGTAAATCTCTGCTCCCCGCCGCACCCTCCTCGCCCTCGCACTCACCCTTGGTGGCCCCTGCCTCCTGCGGGCTCAGGAGGGTCATCAGGGTGTGGAACCCCAGGACCAGCCCTGCTCTGAGGGCCATTACACTCTGGTGCTTTAATCAAATCAGTCTCAGTCCGTGTGGTGAGGACAGGAACAAGGCGGAGGTAAAGAAGAAGAAAACAGATTCGAGGATGGGGGCGACCCCTGCTGTCTTCAGCCAATCACAGAAATTCTCTGAGTGAATGTATCTGTTGCTGGGTAAAGAGGGAAAGAGCCGGGGTGAGAAGGTGGAAGGATTCACTGGGCCCC-------------------------CAGGAGAGGCCAAAGGAAGT-----TTTGGAGGATGGGAGGGGCTTGGACCAACTATTACCACGTCCTCCAAGAAGGGACCCCCTGAAGAGAGAGAAAAGGCCGTCAGAGCACCGCGCAGCTGAGCTCCAACAAATCCTCTCTCTATGTCC---ATCTGCGATGCAGGGAATCCTACTTTCCCAAGAAGTTTCCGTGGACAAATTTTGAGTTA--------------GAAAGTAAAATAAACTTTACCAATAATCTTTAAAAGGAAAACATTGGCTACACAATGGAATAAAAACCTCTTAAAACTTTAAATCACTTTCAAAAATGttattttatttttcttttattattatttaatttCATTGTGTAAGAAAAAATGTGTAATTGTTGGAGTTGTTTG---------GTCTAAAGCAAAG-----TGTAAAGAGCTCCCGTGGACT-CCCCGAGGAGGGCAGA-GGTGCTGG-TCCTCTCTGTTGGTCCCTCCAGG--ACCCGGGCA-CCTCCTCCAGGCTGACA------CAGGCTGGAg-------------------gacggcatcacccttgcctttggcttctggttgggctcggctaataagaggcactgggagaaTTTAGTCCAGTATATATATTTAAaaaacaaaacaaaacaaaacaacaacaaCGTAAAGCTAAC-----GTCTGTGTAAAGAGAAATCTAACCAAAT-----TAGGCCATGCGTCAAAGACCATGAAATCGATGATTTTCAACTTGGAA-GGAGCTAGGAAATCATGCGggtctctggttccaaat------------gagaatcacctggggggttcgttataa s canFam2.chr12 5568116 4575 + 75515492 cctgtacttttaaaaaggctcccaagtgattctcctgtacattccagtttgaaaacc----------------------------------actA----------------------------------------------AGAAAGATCCACC----------------------TGAACTCTGTCTAA--------------------------------ACCAGCTCTTCTAC--------TGGTATGACTGACCCCAGGTTAAGGAAGTAATCATCATATCCAAGCCTTGGACCTCTCTTTGTCATGCGTGGGACTCCAGGGGATGTAGAAAAAGGAGATGACATTGTAGATCATGGCTGTATACCAAAGTTCTCTTCATTACAGAGTAAATCTGGACAAGAGTAGAATTCCCATGAACATTTCCTCTCC---------TGAAAACT-------------------------------------------CCTTTAGGGGCAAATCTGAATTCAGAAGGTAAATTTCATGAAGTCCTTGTGAGAGGACCGATTCATAAC-TAACACACCATAGAGACTCAAACAGAACAAGACATAGCTGAACTGGCCTGAGGATAGCTGCCTATCCCCGTTGAAATGTCCTGCTCAATAGTCATCACCTGGAATACCCTCTTCCAGCATCCCTCACACCCTGGAAGAACTTGCCAAGATCTGATAGAAATGATACAGTACAAACACCATTTAAAAATTTATTGCCACTAACCAGAGCTTTGGGTAGAACAAGAAAGAGgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgagtatgtgtgtgtgtacgtgtTGGGGGTGGGAAGGGGAGCTAGCTGCTGCCCCACCAGTCCTGCAGTGAGTACCAGGTCTAAGGGAGGAGACAGACCTATAGCACAGAGTTTGATCCCATCCAAAGTCAGCACAATAGAGATATACTTAGTAGACTGAGGCACTGAGTATGCAAAGGCTGTCAGAAACTTGCAAGGAATCCATAGAGCATCTCCCACAATCC---TTTCTCGGAAGGCTCATTACCTAAAGTGGTAAAAAGCATATAATCAAG----------CTCACAATGCTGGGATCCTATCTCTGATTGCCCACCTCCCC-AAAACCTCACCCCCTCATC--ACTTCTACTCTTCTATTCCCTGCCCGCTACTTGTCTATTCACCCTTCCCATTGGCCCCATTGCTCCCCAAAGAAT----GATCCTGCACCC-CATCCTGTTCAGAGACACCCACTCTCCTGCCCC------CAGACTCCTGGGGGCCTCTGTACCTGGGGCCGCTGGACAAGCACGTGCCTCTGATGATGAAGATGGTGCCCACAAGGAAGCCCACCAGGCCGAGAGCCAGGCCAAGTGCACAGATCAGAGTCTCGATGGTGTCTGGCACTGGGATAGGCACCTGGGGCTCTTGGGGGAGAAAGGAAAGGTCAGGGGGTTCAGAGAAAGGATTCCAGAGCAAAGGAAACATGGGTCTGTGGAGAGTGACCTGGTGAGGAGCTCCGTACCCCAGTGCCTGAGAAGCGGCTCTTCCAGACCCCAGTGCTCCACCTTGCAGTCATACATGTCTTCTGCAGAGGGCACGAAGGTCAAGTAGCAGAACTTGCGGAACAGATGGTCAGGCTGGGAATAGAAGCTGGTCTGGGCTACCCCCTCGCTGATTATTTGACCATTGCGCAGCCAGGTGATATTGATCACAGGAGGGAAGATGTTGTCCACAATGCAGATGAGGACATTGGGCTGGCCCAGCTCCACTCGAAACTTGGGGAGTACAGCCACCCTCGGAGGCACTAGGAAAAATGAGGCCTTGAATTCCAAAGGCTCATCCCT-GTACCTGGGCTTCATTAGGACTTGGATTAAGTAATGTTTCCTCCTATTTAGCCATTTACAGGGAGGAAATGCTCTGGGATGTAACAGCTTGGGTGGGAGGGGTG-----CAGAGGGAGAAGAGGCTGAGAG------GGGGGCACCTGGAACCCCTGTATCTGACAGGTCCCTGAGAGGGCATCCAGGTGGAAGG-GTCAGTCCTCAAGAAGGAAGAGTGTGCTGAAGGGGTCTGGGAAGATCAAGAGCCTCCTGGAAAAGAAAGGGGCTGATTACAACAGTCACAGAGGCTGAGA-GATGTGCTGGAGCAGATGGAGGCCTGTGAGGTGGGAAGAAGCTTCTCTGGGCCTCCCTTGCCTAACACAGGGTAGCAGAGGGAACAAGGAGAGGAAAGGTGGGTACCGTTGATGGCTCTGGTGCGGTTGGAGCGTTCCACCAAGACATCCAGGTGGGCTTTGATCACCGCGATGCTGGCCAGCCCATTCTGTGGGTCAAAGTGGGCCAAGTTGCCAAACTCAGGCAAACGCCACACAGCCTGCCTCTTCTTCAGCTCCACGGAGAACAGCTGTTCCCCATCAAATTCATGGGCAAACTGACCCGAGGAACCATAGGACTGGTAGAAGGCTGGTCCATAGGAGCCCATGTGATCAGCTGTATTGAGTGAGTTCAGGGTCAGAGACAGAAAAGAAAATGTATCAATCTCATCTAAAGCAGGTGACACTTTAAATTTCTGAGCCTACATCCCATCCTGGGTTCTCTATGAGGGCAAAGTTGAGCTGTTGAGCTGGTCTTTGGACAGTGGAAGTGTTGCTGG--CGGGGGGGGGGGAGAAAGGAGAGGACAGAGGGACACGGACATGTGCCCAACACACTGGCAGGAACAGAGAGACACGAGTGCAGTCCAGCATACCAGGTTGGGAAGAAGAGAGGCTGCCTCAAATCATGCTTGGGATTC--AAAGTTAAATGGTAGCCATGATCATCAGCTCTAGTTGTGCTATGAGGTCCTGTG-TGTGAGATGAGTGGTATGAGGGAGTGGGATGAGGGAAAATGATTAAGGATGGGAGCATAAGTAGAGCCTTGGGCACAGAGATGCAGTATATGTGGGCAGGAGGGGAGAATAGGTGATGGCTGGCAGAAGTAAGAATTAAGATTTGTGA--CAGAGATCAAACAGACAGGAaaaagcagcctggggtattgcagagagcactggaaaaggagtccaaagttcaagttaggtttatgccccagctcttccacctCAAGAGATTATGATCCAAGGTGTCTCTTTCCATAACTGAGGCTTAGTTCTCTGGAAATTTGGG-TTAGATTTTAATCAGTAAGGGACCTCTAGAAATCTATG---------------CAGTCATCGAGGGActactatgtgcccagcatgatgtcaggccccagggaaat----------acagatgaaccagctgtggatccctcactcaaggagctcatgtct-----AGAGCA-----GGATAAACAGTTGACTATCCACATGGCGATAAACATTGCAGTAAAACTGGACCTGAATGCGCACACTCCAAGTCAGGAAGTGACAGAAAAGTCACTGTGCTTGGCGGAA---GGAGAATGGAGGTTTGGGTCTCAGAAAGAAGGAAGGAGCTGGGGAGGCACCTGAAC--CTGCA---GCTGGCATGGCTAC-----------ACTGAGCTGCACCTGTATGTTTAGGTCTGCAATGAACATGATAGAGGTGAGAGAGATTGAGGATCTCTCGGTAAAGGAAGTTGCCCATAAGCCAGAGAAGGAGAACAATCTATGTTCTTTCTATACTGTCT-CTCATAGAACCC-------TAAATTTCCTTTCCTCAGCCGATCCCCCTCA-----GCACTCACCCTCGATGGCCCCAGTTTCATGGGGGCTCAGGAGGCTCATCAAGGTGTAGAGTACCAGGACCAGCCCCCTACTGAGGACCATT--GCCCTGGTGCTTTAACCAAGTAAGTCTC--TCAGAGTCGGGCTGCC--GCAGAAGGTAAAGA-AAAGAGGAAGGAAAC--ACTCTAGGATGGGGAAGACCCCTGCTGTATTCAGCCAATCAGAGACACTCCTTGAGTTAAAGTGGCTGTTGTTGGGTGAAGAAGTAAGGAGCCTAGGTG-GAAGGTGGAAGAATACACTGGGCCCTCATTGCACCACGGAGGCCTGGTCCACAGAAGAGTCAAAAGGAAGCTTCTGTTTGGGAGATGGCA-GAGCTTTAATCAACCATTACTACAAACTCTAAGAAGAGACCCACCAAAGGAAGAGAAAAGGCCATCAGAGAACTACACAGCTGAGCTCAAACAAAGCCTCTATCTTGCTTTGTGATCTGTGGTGTAGAGAAACCCAGTCCCCCTCTAAGTTTCTGCAGACACATTTGGAGGCaataataataataataataataataTAAACTGTACTCAGGAACTTTGAAAAGGAGATGTTGAATACACAGTAGGATTAAAATCCTTTAAACCTTTAAATTGTTTTGGAAAATATTACTTT----------------------ATTTCATTGTGTGAAAAAAAA-GTGTAATTGTCAGAGATGTTTAGAGTAAGATGTTTAGAGTAAGGAGAACTGTAAGAAGCCTCAATGGACTGTTCTAGGGGGGGCAGAGGgtgctggataacctccatttgtccctccaggtctcctgggcaccctccttcatgctgccagcatccccagccccagcccccgtccctcccccagcaacagcaactcctttccctcccgcttccggttgagctcagccaatgggaggcgggaggagGATTTGTTCTAATAT---------GAAAACTATATA-------------------TAAAGCTAACCATCTCTCCAGATAAGGAAAAGTCTAACCAAATACCTGAAGGCAGTTTCTGAAAGATCAGAAAATAAATGATTTTCTGCTTGGAAGGGAACTAAGATATCATCTGAGTCTAtggttccaaaccccgctacagaggagaatcacctggaaagttggttaaaa a score=3996 s hg19.chr6_ssto_hap7 4458993 95 + 4928567 tacgtgttcctgagtttcctctttacttaatgggttagattagcctttccaa-ggcagggccagggaacctgtgttttcagcatgctccccaggtg s canFam2.chr12 5572903 93 + 75515492 tacggattcctgggttacatcctgacc---tgagttaaagcagccttttcaagggtagggctgagagacctgcgttagtaacacgctccctaggtg a score=11589 s hg19.chr6_ssto_hap7 4460496 280 + 4928567 CTCCTAGCTTTGCAGGTAGGAGAGA----------GAACCTGGGAAAGGCACATTGTTTCCATGGTTTTGGACCAGAAACTATTTGCcatctctgctcacattccattggcaagaagtaaacaatgaccccacataggcgcacggggatggaaaaatgtacgttacctatgtgtgcaggaagatataatggtttggtgagcacat----ggcactgtctttgctgcaTTCTGATTGTGTTTATTGTGAATATTGATGCACTTGGGCTTGTTTGTAATACCTTATTTATTTCAAT s canFam2.chr12 5573025 283 + 75515492 CTCCT-GCTTTGCAGGCTAGAGAGAACCTCCAGAAGGATCTGAAGAAGA--------TCTTGCAGCTTTCGACCACAAACCacatgccatttctactcacattccattggcaggaattaaacaatgaccctgcccctgggca-gggctgggaaaaatgtattttagcggtgcgttcaggaagaCGTAGTGGTTGGG-GAGCACATCGCAGGCACTATCTTTGCCCCATCCCTGCTCTATTTATTGTGATTATTAACATATTTGAACCTGTTTCTAATATTGTATTTATTTCAAT a score=5186 s hg19.chr6_ssto_hap7 4461117 307 + 4928567 TTTTTTAATCTTCATTGCCTTTTTTTTTTTTT----------------------------AAGTGTTACCGATACCTTCTCCATCTTCCCTCTGACTGGATAAGAACTTTAGCATGCTttcaaatttattcacatattttctc----cttcaccaaattatttggtcaacattacttttcatatcttttggcaccttctagaatgcgttctctgattagaattcttcttccaagacctttcagatgtgggaatttgcatagcaaaccttctaaagtcttgtatgcttgataattttttaaaattatgccagtacttttgaataaagtttagctgtgtat s canFam2.chr12 5573308 275 + 75515492 CTTTCCATTTGTTGTTGTTGGTTTTTTCCTTAGGCTTCATCATCTAAAAAAAAAAAAAAAAAGTGTTATTTTTACCTTACCTATCTTCCCTCTAGCCAGATAAGAACTTTAGCATGCTTTCAAATT-ATTCATATACTGCCTCTCTACTTCACCAAGGAGTTTGATCAACTTTACTTCTCAT-----------CCTTTTTG---GCACCCCCTGAC----ATTTTTTTCTC-----CTTT-----ATTGGAAT---------ACTTCTTCCAAA----------------AATGTTTTAAGTATGAGCAAAT-CTTCTGAA---------GCTTTGTAT a score=811 s hg19.chr6_ssto_hap7 4461629 26 + 4928567 atcttctctatcttttaattctggga s canFam2.chr12 5573712 25 + 75515492 ACCCCTTGTATCTTTTA-CTCTAGAA a score=6429 s hg19.chr6_ssto_hap7 4461803 174 + 4928567 gaactagctcctcagtgtagtcctccatctttctgttttgtttttcagttgcatctctcccactatttat-cccattaatgtggcttttactttgactattatatatatatttttacacctagaacgtcta---ggttttttccctatattctctattttttcatattataatagctt s canFam2.chr12 5573737 160 + 75515492 GAGTTAGTTCTTCAATGTAGTCTTCC-CATTACTCTGTTGTTTTTC-----TATCTCTCCCACTATTTATTCCCAGTAGTGGGGTTTTT-----GACTTTCATATTT---TTTTCATGCCTAGAACTTCTATAGAGCTTTTTCTGTAT----TCCTTTTTTTCATATTATAATAGTTT a score=20429 s hg19.chr6_ssto_hap7 4461977 743 + 4928567 ctgacttttaaagtgcacttttaatgctcattttaaGCGGCTGGTCTATATTTTCTACCACTTCTTTCAAGGACATAGATGGTCCTGTTTGCTGTTTTTCTTTTGAGGTGTCGGCACTCCCTAAAGG--------TATTATTTTGACCCACTAGTGGCCATCTGTGTTGGTGTCATGTGTGTAAAGAGAAAGGAGGGCCAGCTGGAGTCCTAGGCCAGCGCAAAACCATAGTCACTACCCTTTGGGTGTCAC--------------TTCAGGTCAGGACTTCAGGGTG-GGAGCACTAGGAGGCGTAGGG------------------AGCACTGATAGCTG------GGGTGGCAGAGGAGGCAATGACTAGGGCA---------------GTCCCCAGCTCCTCCCACTCCAGCAGG-ATTTCAGCTTGGATTTTCTCACCCACCCTTCAACAGC-----TGGACAGGCAATCAGGATCTTG------------------------------------------CCATTATTTTTTGCAGCAGGGAGCAGGCAGTGATTGCTCAAGGCCAACACCGGGG--AGGCAAGAGCAGAAGGTTCC--AGGAACCTTCTCATAGCCACAGCCAGCAAGCAACCCAGTTCAGAACACCTTTCAGTCTCACCAGGGCTTCCTCA---------------------------------------------------------------TTAT------------------------TTGTTTTCTTGGAATGTATATGTATGGTCCACATTCCCTCCTAGATGGAAAGGGCCTGTAAGAAGGGATCATGGATGATTGAATCTTTGTTACACAATCTTCCTTTTCCCCCTAAACGCTAGCACGTTATTAAATAAAT---------------AAGTCAATGATAACAAATAAAAGTGAATAAAGTGG s canFam2.chr12 5574088 927 + 75515492 CTTATTTTTTAA-TGTGTTTTTCATGCTCCTTTTAAGTGGCTATCCTATATTTTCTAATATTTCTTT-AAGGACACATATGGGC-TCTCTGTTGCTTTTCTTTTGACATGTGAAACTTCCCAAAAGGGAGGGAGTTATTATTTTGGCCTTCAGGTGCCCATCTATGTCAGTATCATG---GTAAAGAGAGGGAAGGACCAG----AGTTCTAGGACAGCACAAAACCA--GTTGCCACCCTTTTGGTGTCACCTTACTGGTGGCAGTTCAAGTCAGGGCCTCAGGATAAGGAGCCCTGGGAGGGGCTAGTCCTCTCTCCTTGTCCGCCAGCCCTGAGGACGGTCCGAAGGAGTGCTGCAGAGTGAATGACTATGGCATCAGGTGCACTTATTGTCCTGCACCCTCCCCACTCTAGCAGGGATTTCAACCTAGACTTTATCCCCAACCCTCTATCTCCAGGCATGATCCAGCAATCAGGATCTTGGGCCACTGTTTTttgttgttgttgttgttgtggttgttgttgttgttgttTTTTGCATTATGGGACAGGCAAAAATTGTTCAAAGGCAACACTGGGAGAAAGCAAGAACAGATTGCCTCTAATGAATCTTCTCA------CAGCAAGCAAGCTCCCC----CAAAACAATTAACAGTGTCACTAGGGATTCCCCAGTTTCCCTCCACTGCTTCTCCAGGGTTGGTTTTTAGAGCTGGGAACTAAGAACATATGCTAATTTATCTCAACAAAAAGCAGATCTCTCCATTATATTCCTATAATATTTATGTATGAACTATATTCCCCCCTATATAGAAATGCCAAGCAGTTGAGGTTCATTGA---------CTCTGTTATAGAATCTCCCCTCTCCTCC-AGATGCTAGCCCAGTATTAAATAAATGCTTTTCAAATAAACAAATAGATGCTAACAAATAAAAATCAATGAAGTGg a score=34414 s hg19.chr6_ssto_hap7 4462720 1046 + 4928567 ATAACCCTGACTCTAGGGAGAGGTACTGTTATTGGGACTAGAGTCTAATAATGAGG-CAAACACAGATTCGACAAAA-ACTTACTAAAGTGTCCTTTAAAAATGACACAAATCCAGTTGTTCTAAATTGTCTAAAATGCTGACTTTGAGGTAAA--GTTGTATCTGTCATGTT------------CTTTGGAGCATGACA---AGTTCAGGTAGGTGTTGGGGGATattcttcattaaatacatgtttatagga------------------cacctgatgtg-----acttaggcactgtgtgc---------tgctctgggagcacaga--agagcaggacatgatccccttcctcaaggactgtgctgtcctgtgcagtagccgccagccacctgtagctattaa--------------gcca------aaaaaaactctaagtataaaatgccctgggatttgaagactt-------------------------------aattaaatgt----atatacataatctcagtaat---ttctatattaattaatgttcagtttgcaattttttgtatatttgcggtttaaaatatgtattagattaatctcacctgtttcttattgctttttaaatgtagctactagaaaatttgaaattgaattaagaggctcccattatatttctactggacagcgctgCTCTGGGTGCTCTTGGTTGGCTACCAGTTGGCCACTGGCTCCTTTTCTGAGATTTTTACATTTAAGTAGCCAGCTTGCCAGAGTCTTCAAGT--------CCTTTCCTGTTACTACCTAGATATTCCACCAGAGGGCGACCTTACCATTGAATTTTTCCATTCTGGACCTTAGATCTGACTGTTTGCTGGTGCATCGCTCTG-TTTTAATCTATTTTGCTTTAAGTGCCGTGCTAGGCTTTGGGACCACAATTATGGTTCCTGCCAACAAGAAT-----GGCTGTCTTGGAAGTCTGTACACAGAACTAAATACGTGGTGGAAAAAAGAGAAGGTC----------CATTAATGTGCAATATAAATGTTCATGTGGCCTGCAACTTTCTGGGGCAATCCTTTCCCT---AGTAATTAAGCAGTTTCAAGTGCCTGTCTAATTGCAGGAATTCAAATGGCTCACTGCTGTCACCAGAATG s canFam2.chr12 5575250 1160 + 75515492 ATACCAGTGGTTCTAGAGAGAGACATT----CCAGCACTGGAAACAAGTACTGAAAATAAGTACATGCTCAACAAATTGCTGAGTAAAGTGCTCTTTGAATATGACATAAATTCAGTTCCTCTAAATTGTCTAAAACACTGACTTTGAGATAAACAGTTGTATCCATCATGTTGAGCATAATATGCTCTGGAGCATAATATTAAGTTGAGGTAGGTGTTAGGAGATATTATTCATTAAACACATATTTAATGAATATGTGTTTCATTAAACACACATAATGTTTTTTCATTCACACATTATGGAACACCCACTATGTCCTGGGGACACAGAGAAGAACAGGACACTGCCCCTTAATCATAGGACTCTgctgtccaatacggtcaccacctgccatatgtggccattgatcacttgtaatgtagccagtcctgagatatactataaatagaaaac-cactgtatttcgaaggctttgtaaaaaatatatgcattatatgtatttaaaattatatatctgaatatatataatctcattaatagtttttatattgattgttggttaatttgcaatattttggatatgctgagtttttgatatat----tattaatttcac-tgtttcttattacctttttaa---agtgactagaaaacttgacatcgaat-gtgtaactctcattgtattcctattggacagtgctgCTCTGGTTACTCTTGGTTGGCTACCAATTAACTATTCAATGCTTTTCTTAGATTCTTCAATTTA-GCTGTAAGCTTTTCAGGGGTTGGAGGTGGGGGGATCCTTTCCTGTGATCACCTAGAGATTCCACCAGAGGGCGAC-TTATCTTCCACCGTTTCAATTCTGGATCTTCAATCT-ATTTTATGTatatgtattgaactacttttagtttattatgcttcaggcactgtactaggctctagaaccacaattatggttcctgccatcccagatcttacaatttatcaagaaggctataaaca--actaaTTATCATGTGAAAAGAAAGAAGAATCAAATCCATTATATTAATGTGCCATATGAATGTTCATATGGTCTTCAACTTTTTGGGATGACCCTTTCTTAGTAATTAATTAAATAGTTCCAACAGA-----TAATTTCAGGAATTCAAGTGGTCTAGTTCTCTCTTCAGAATT a score=19655 s hg19.chr6_ssto_hap7 4463766 456 + 4928567 TCTGATAA-------------------------------TTCCTGGACAGAGAAGTGATGCAAATGTGTGCTTACGTATG--GAGTTGATGGCATCTCCTGCACCAGCCTCCTGCCCTGGGCAGACTGTTGTGGTCATTTGGGGGCAGCTCCCCAGCACAGCAGATTTCTTGCTGGCCATCACTTTTCAAACTCTGGACTTCTGCCCTTTGGCTGGGAACTGCTCACTTCCCTTAGAACTTTCCCCTCCCGTCTCCTGACTTCTCTAAATGCCAGAGTTCCAACCTCTGTCTCCTGGGAA----------ATTCTAAGCTAAAATCACTCTT---------------------------------------CCTTTATATCTGCAGATAGTTTGA--------------AATTTATACATTAAAAAAAGTAACTTTAAAAATATATA----------------------------ACTGGTCTCATTACACTCTGGAGCAACAATTCCAAATGATGGTAGGAAAACCCCAAAATTGGCCATCGAAAGGCATAGATACAGcccttcctgtttaaaagaggt s canFam2.chr12 5576598 571 + 75515492 tctcataaataaattttaaaaaaatttttttaaaaGAATTCCCTGGACAGAGAAGTGATACAAGTGCATGTTTCCACATGCCAGATGCTTAATGTCTTTTTCTCCAACCTCCTGCTCCTGGCACACTGTTTCAGTCATTTTCAGGCTGCTCTCTATCATAGCAAGTGGCTTTCTGACCATA--TTTTCAGGCTTTGAACTTCTGTCGTGTTGCTGGAAGCTGCTTGCTTCCCTTAGAACTTTCCCCTCCCATTTCCTGACT-CTCTAAATCCCAGACCTCT------TATCTCCTGGGAACAAACTGGAAATTTTAAGCAAAAATCACTCTTTgttctcgctttggcagcacatatactaaaatCACTCTTCCTTTATATCTGTAAGTAGCTTGATATATAAAAATCAAAACTCATATGTGAAAAACAGTAACTTTTTAAatatatatatatatatatatatatatGAATAACTGACTGATCTCATTATACTCTGGAGCAACAAATCCAAATGATGGTAGGAAAACCCCCAAACTGGACTTTTAAAGGTACAGATGCAGCTCTTCCTATTTAAATGAGAT a score=19313 s hg19.chr6_ssto_hap7 4464222 458 + 4928567 atttttgaaaaacttcaaatgtcttctgggaaaggcacaatctttcacggtttcttctcttccccct-ctccctcccccttttgggaatgacatcctggggcagaggatgaacttacagagcgtgctggctgtgggaagctgggtctaggTGGCATTTTTTCTCTTTTCTGATGGTTCTCTGCCCCCAGT-----------------TCCTTGGCCTGTCCCCATTGCTCGCCAACATTTCCGTGGCTGGTCTAATCTGCGATCGATTATCCCTGACGAAGGCAGTGGGGCTCAGCCACCTTGCCTGCTGGTGGCCCCAGCGTG-GCTCTGCTACTACT-CACATCC-TTCCAGTTTGGCGAGGCTGCAGCCTGATCCTGGGCCCGTGTGTTCTGGGCTG-TGGCCCCTGGCTCCAGGCCAGTTCAAGCCTCTCCATGACCATCCTGAACACCAATTTACTGCACGTCAACTCACTAAAA s canFam2.chr12 5577377 469 + 75515492 GTTTTTGAAAAGATTCGTCTCTCCCCTGGGAAAGGCT--GTCTTTCAGGGTTTTTCCTCTTTCCCCTTCTCCTTCCCTCTTATTTGAATGATATCCTGGGACAGAAGGTAAATTTATATAACATTATGACTATGGGAAGCTGTGTCT---------TTTTTCTCTTCTCTGATGGTTCTCTACTTCCAGCAGCATCTTAATCATTGGCCTCTGCCCTCTCTCCTTCAATTACCAAAGTTTCTGTGGCTGGTCGAATTGGAGATCAGTTCTCCTTGGCAAAGGCAACAGGGCTCAGCCACTTTCCCCACTATTGGCCCCAGTGCAAGCCTGGCTCTTGCTGCATATCCCTTACATCTTGATGCACCTGCTACCCGATCCTGGGCTTGCATAACTGGGACTGCTGGCCCTTGAATCCAGGCCAGGTCTACCTGCTCCATGATTACCTTGAAAATCAATTTACTGAAAATCAACTCTCTAAAA a score=6859 s hg19.chr6_ssto_hap7 4464680 186 + 4928567 TCAACCCATCAA--------CTAATCAGAAATTAATACATCAAATCATCAATTCTCCAATTTTATCAATTTGCCAAAAACTTGACTTT-----------AAAGTTTTGTCCTTTTATA--TTGAATTTAATGGTTTT-----TACAACTTTTGAAGACTTCTGAAAATGTTGGTTAATTTGCCTTTCCTTTTGTTTTCATAGTAGCTTATAA s canFam2.chr12 5577996 199 + 75515492 TCAACTCACCAAATGGCCAACTAAGCTGAAATTAATTCATCAAATCA-CAATCTTCCTATTTTACCGATTTACCAAAAACTTGATTCTTTAACTTTATGAAGTTTTTGTTACTTTATACATTGAGTTGAATGGTTTTATGCATTCAATTTTT------TT-----AATTTTAGTTGATTAGC-TTTCCTTTTTTCTTCATATTAGCTTTTAA a score=37936 s hg19.chr6_ssto_hap7 4464866 802 + 4928567 GTAATATTCGATTTGTCAGATGTTGGTGATACAGGGAGAAGATGACAATGGTGACAGAGTGTTTTTCATCTTCCCAAGTGTCCTCACAAAAACAGAGAGTGCAACTGGGATAGCAAAGGAAAATATCCACAGGCAGTGTCTCTTTATCAGACCAGGGATATCCCTAGAAGATCCCGTGAGACTCTAGAATGTGTGTGGGTAGATCCAAGCTGTAGATCCAAGGTAGATCCTGTGGGCTCTAGTGCCATGTGGAGGTAGCAGAGGGTTGAGAGGAGAGGGTTCTGGTGTTTCTAAGATCTCGGGAACACAGAAGTGGCCAGTGAGTGCCCACCTCCCAAAAGAGGTGATCTCAGTCTAGAATGAATCCCCAGCAGAGAGCTCTAAGGACCTAGAC--------TTTTGTAaa---------tttagaaactcccttttctcttaccaatgtctaatttttaagactatgactttgatatagctgtcaatattctgttttggaatattgtttgcttttggtcttctgtgataaaaatccaaattttcccc-------tggg------tgaataggcataaggtcacatctaaagaagtgc-aaaaggaaaacattaaGACCTCTAGTAAATTAATGTTTTTATAATAACATA-TATCTCCATATGCTTCACAGAAACATGTAACTT----CTGTCTATACAAGCTTTGGGTATTTCATTTATAATGaaatggcgcattaacgtgtttttctaaatcaaaagtcaatttcctccttgagattaattacatctccagaatatgaaagcagcttctgacactatgtatttgaaatagcaattt s canFam2.chr12 5578416 807 + 75515492 GTAATGTTCAGTTTGCCAAATGTTACAAATACAGG---AGGATGATAATGGCTGTAGAGT-TTTTTCATTGCCCCAAGTGTCCTCATGAAAACAGAT----CAATTGGGATAGCAAAGGAAAGTACCCAGAGACAATGTCT--TTAACAAACGAGGGACA-----AGGCAGTACC-TGGAACTCTAGAATATGAATGGGTAGGTCCAAAC-----AACCACACAGGATCCTATAGGTTCTAGCTCCGTGTGGAGGTAGCAAAAGGATGAAAAAGGAGAGTTTTGATGTTTATAAGATCTCAGAAACACAGAACCAGCCAATGAATATTCACCTCCAAAAGAAAATAGTCCCAGCCTAAAATGCACACTCAGTAAGAAACTCTAAAAACCAAGCCAAGCCTGAAATTCTAAAGCCAAAAATTTCAGAAACTTCTTTTTCTGTTACTAATGTCTGACTTTCAAGACTATGACCTTGCTGTGTCTATCAATATTCTGTTTGGAA-------TTCTCTTTGAAGTTATATGATAAAAATCCAAATGTTCCCCAATACAATGAGTATCTCTGAAT--GAATAAAATCACATCCAAAGATGTGTGAAAAAGAAAATAGTAAGACCTTTAGtaaa-taatatttttataataaaatattatCCCTATATGTTTCACAGAGACATGTGACTTCCACCTGCCTCTACTAATTTAGAGTATTTCTTTCATAATGAAAAAGCACATTAATATGTTTTCCTAAATCAAAGGTCAATTTTCTCCTTGAGATCAGTTATATCTCTAGAACACGAAAGCAGCTTCCAGCACTATGTATTTAAAATAGTAATCt a score=3609 s hg19.chr6_ssto_hap7 4468898 61 + 4928567 TGAGGAGGAAGTGAGATGATCATGGTTGTGTTCTAGGATTATTAACCTGGCACTAGTGTAG s canFam2.chr21 27176078 61 + 54024781 TGAGGAGGAAATGACATGATCAAAATGGTGGTTTAGGAATGTTAATCTGGCAATGGTGTAG a score=3677 s hg19.chr6_ssto_hap7 4478094 80 + 4928567 CTTCTCAGGGGCTTAGTCTGCCAGAAACTAGTGACACTGCCTTTCACCCACTTTTTATTGGATAGAGAGAAATGTTACCA s canFam2.chr12 70241869 80 - 75515492 CTCCTTCGTGGCTTAGTCTGCCAGAGACCAATGATGCTGCCTCCCATGCGGTTTTCATTTGTCTGAGAGGAACGCACCCA a score=32 s hg19.chr6_ssto_hap7 4507134 70 + 4928567 TCTCTTCTCTACAAACCATGCTTTGTGTTCAGCA---------------TGCTCATCTGGCATCCAGTTTAAGAAGGATATCTTC s canFam2.chr23 38267411 85 + 55389570 TCTGTCCTCTCCTAATTACTATTTATTTTCAGCACCTGTTTGATGCGGTTTTTTATTTTCTACCTATTGTACTGTTGTGACTTGT a score=4506 s hg19.chr6_ssto_hap7 4507204 58 + 4928567 TGGCCATGATTTGATTTTTGTATGAAAAAAATCTTTGTTGTAGAAATCAGCATACTAt s canFam2.chr7 78557320 58 + 83999179 TGGCCATTGTTTGATTTTTGTACGAGAAAAAGCTTTGTTATAGAAATCAGCATACTAT a score=20959 s hg19.chr6_ssto_hap7 4509109 308 + 4928567 TTTTTAAAATATGGAGAGAAGATATTCTGGTGGCTGAAAGTGTGGTCTGGTGTCAGATATAAATGTGCAAATGCCTTCTTGCTGTCCTGTCGGTCTCAGTACATTCACCTTGTAGCTGCTGGAAATATCGAAGGTTCCTTTTTTGTTTGTGTAAACTC-TAATTTCTATCAAGGTGTCATGGACTTTTAAAATTAGTATTTCATTACAAATGTCTCAGCATTGGT----CAATTTTTGCCAGGACCATTATTGATCAAGCAAATAAATTCAACAGCCATTAGGAAAAAAAAAGAAGGCCATCTTCTTTTTTCA s canFam2.chr7 78557378 313 + 83999179 TTTTTTAAATCTGGAGAGAAGATATTATGGTGACTGCAGATATGGTCAGGTGTCAAATATAAACGTATAAAAGCCTTCTTGCTGTCCTGTCGGTCATATTACATTCATTTCATATTTGCTGGCAATATTGAAGGTTTCTTTTTTGTTTGTGTAAACTCTTAATTTCTATCAAGGTGTCATGGATTTTTAAAATTAGTATTTCATTACAGTTGTCTCAGCATTGGTTAACTAATTTTTGCCAGGACCATTATTGATCAAGCAAATAAATTCAACAGCCATTTGAGGAAAAAAACAGCAGTGTCTTTTTTGTACA a score=488 s hg19.chr6_ssto_hap7 4509417 144 + 4928567 ATAAATGTAT-----TATATAGTTAATAGTTTCATTTATATAGAATGCATAGAAACTGTTCACAGA-ATGT-CCAGCAT-TTTGTATTTTTGCAGTAGGGAACATTTCTTCACTGAATTCCACTTTCACATTAGATA-----ATTTAATAGTTTTAT s canFam2.chr16 3444866 143 - 62570175 ATCAATCGATCAacatatata---------tatatatatacacaacatatatatgttgattgttgatatatatcaacatatatatgttgatcgattgataaataattttt-----aattatatttgtatattatatatttataattaatatttttat a score=1253 s hg19.chr6_ssto_hap7 4516742 115 + 4928567 aaatcctcagaatagcgcctgacca-tattaactac-tcagttagttatCGGTAT-----TGTTGTTGTTATGTGGCTGAATGCTTTTAACCCATTAGAAGATCAATGAACACTTATCAGAT s canFam2.chr12 5607624 121 + 75515492 AAATTTAtagaatggtgcctggtaaatagtaagcacctcaactgatgctcattatcattGTATTGTTTTCCTTTAGTTCAGTGATTTTGAAATGCAAAGTGCTCAA-GAACCCGTGTCGAAG a score=19017 s hg19.chr6_ssto_hap7 4516881 797 + 4928567 TTCTACAAATCCTAGGGCCTCCTCTTTA-CATTCCCACCTTTACAGTATTTCACAGGGTCCCCTGG-GCCCGGGGGTCATGGCCAGAACGCAGAGACTTTATGATGAGGACGGTGCCCACGATGATGCCGACTAGGCCCAGCACCAGGCCCAGGGCACAGAGCACAGTCTCCGTTGTCTCAGGCATCTGGATTGGCTCTTGGGCCTCTGGGGGAAGAATGAAGAGATAGGGTCAGGAGGTGCAGTGAGGGTGGTGATGGCCTGGGATGGTTGTGGGAATTGAAGGT------------------------TATGGACCAGTTAA--------------------------------------------------------TTGGATGTTAGGACGAGGAGAGGACT--GAGACCCAGCCAGTGC----GGAAAGCTGGTG-----CAGAGGACACCAGGTCTTTGGAATA---GAGGATGCCAGGAGATTATGGAGA-GAAAAGCAGTTGCATACCCCAGTGCTTGAGGAGCGGCTGGTCCAAGCCCCAGTGCTCCACCCTGCAGTCATAGAAGTCCTCTGCTGAGGGCACAAAGGTCAGGTAATGGAACTTGTGGAAGCTGTAATCTGTTCTGGGCAGGAAGAGGCTCTCAGCGACACCCTCAGTGACCAGCTCCCCGTTGCACAGCCACGTGACGTTGAGCACTGGTGGGAAGAACTTGTCAATGTGGCAGATGAGGGTGTTGGGCTGGCCCAGCTCCACAGGCTCCTTGGGAAACACGGTCACCTCAGGGGGATCTGGAAGGAGACAGCACC-AGGTTAGGCCCCTCTTCTGGGA--------------------TGAATCACAA----------AGGCTCCACCTCTTAGGGGAGGGTGGTCCTCTACCTCAGCCTTAGAT s canFam2.chr12 70374851 899 - 75515492 TTCTATATAT---ATGCCTTCCTCTACATCAAACCCACCTG-AAAGTGCCTCAAAGAGGCCCTCGGCGTTCACCAGCTTTGACCTTG-CGCATGCCCTTGATGATGAAAATGGTCCCAGTAATGATGCCCACCAGACCCACGATCAGGCCCAGGGCACACACCACATTCTCTGTTGTCTCTGGGAGGGGGGTTGGTGGTTCAAACTCTGGGGAAAATAAAACAGAGTACAGTACAGAGGT--AATGACTGTG-------TATGGCGTAGCAATTAGAATCAAAGGTAGGGTATTCAGTCAAAAAAATAATTATCAATCAATTAAATAAGAGGAAGACAGAATGATGTATGAAGGAAATGCATATTAAAAGGTGGGTGAAACTGAATAATGGGAGAAGACAAGGAATAGGAGTCATAGCAATTGTTATGGATGAGTTAGGGAACATCCCAAAGCACCAGACATATGCATCACCGGGGAAAATCATAAAAGAAAGGAGATGGAAGGATGGTCCATACCCCAGTGCTTGAGAAGAGGTTCATCCAAACCCCAGTGCTCCACCTTGCAGTCATAAACGTCCTCGGCTGAGGGCAGGAAGGGGAGATAGTGGAATTTGCGGAAAAGGTGGTCTTCTCTGGGCAAAAAGATTGTCTCTGACACTCCTGTGGTGACAGGGTTTCCATTTCGAAGCCACGTGACATTGATCACTGGTGGGGAGAACTTGTCGATGAAACAGATGAGGATGTTGGGCTCTCCCAGTTCCACAGGGGTGTTTGAGAGCACAGTCACCTCTGGAGGTACTG--AGGACACAGGACAGAAATTAGCCTTCCCTGCTTGGGCTAGTCCTTCTCCCTCCCACTGAAACAGAATAAGCAGTTGAAACTCTGCCCT------GAGGAT----CTGTACTACAGTCTCAGAT a score=-292 s hg19.chr6_ssto_hap7 4517738 169 + 4928567 CACCTTTCTCTCTCCTGAGAAGAGAGGATGCAAGCCC-----TTGCTGTAGTGGGATCAGCCCATGGCCACTAGGGGAAGA-----GGATCACACAGCAGGGGGCACTTAGGCTTCCTAGTCTGAGGGTGGCAGAGAGGCCCTCTCATCCCTTCCAGTTGGGCTACAGAGGAAGA---GGCA s canFam2.chr12 70286579 144 - 75515492 AATATTTCAGTTTTCAGATGGGGGAGGATGAGGGTTCAGTAATTACTATGAGAAGAT-------------CTGGGGAAATATCCTTGGA--AAACAGTGAAGAGTATCTATG----CTAG--GGAGGAAGGGAAAGAG-----------------AGCTGGGATGTGGGGACAGATTCAGTG a score=10065 s hg19.chr6_ssto_hap7 4517907 282 + 4928567 AAGATAGGGCGTACCGTTGGTGGCCTGAGTGTGGTTGGAACGCTGGATCAAGGTATTCAAGTTGTTGTTCAATATAGCAATGTTAGCCAGCCCGCCCTGAGCCTCAAAG--GAAAAGGCTTGGCCAAACTCCTCCAGATGCCAGACGGTCTCCTTCTTGTCCAGATCCACATAGAACATCTCATCTTCATCAAATTCAAACATAAACTCCCCTGTTGGTCTATGCGTCTGTACAAACGCGGCATAAGTTGACACATGGTCCGCTGCATAAAGACAGTAGAGAAA s canFam2.chr12 70376080 280 - 75515492 AGTGCAGCACGTACCATTGGTGTTCGGGGTGTGGTTGGAGCGCTTTATCATTGTGTCAAGGTTAGCTTTGTCCACAGCTATGTTGGCCAAGGCACCCTGGGCCTCAAAGCTGGCAAAAC--GTCCAAATTCTTCAAGGCGCCACACCGTCTCCTTCTTTTCCATATCCACGTGGAAAATCTCATCACCATCGAAGTCAAACATGAACTCGCCTGATGGGTCAGGGGTCAGATAGAACTCAGCCTGGATGATTACGTGCTCCTCTGA--AAAGGCAGGGAAGAGA a score=3810 s hg19.chr6_ssto_hap7 4518816 79 + 4928567 AAATTTTAGGGCTCTTGACAGTTTTAAAGTTTCTGTCTTAGTTTATGAACATGAAACTGTAGAATGTATAGCTTTGTTG s canFam2.chrX 18136239 79 + 126883977 AATTTTTAGCACCCTTCACAGATCTAAAGTCACTTTGTTAATTTAGGAACATAAAAATGCATTATGTATAACTTGGTTG a score=4271 s hg19.chr6_ssto_hap7 4521740 321 + 4928567 TGAGCACTCACCCTTGATGGCCCCAGCTCCTCGGAGACTCAGCAGGAAAGCCAAGGAGAGGGCTCTCAAGATCACAGCTCTGATATGGAACATTCTGTCTTCAGGGCGCATGTTGTGGGGTCTATAATTGATGACTGTGAGCACAGGAACAGTGATGAGGAACTGAGGCCGAGTGGAGGCAGATGAGACTGAAACTGTGGGCCTCTAGCACTGGAAATGGGTGGAGAGGAATCAGCATGGCTGGGAT-TCACCTATCAGAGAAAT-CATAGAGCTGACATTCTCTGTTGCTGGGTAAAGAG----------GACGCTGGAAGGTGCTGGGGAA s canFam2.chr12 70290826 291 - 75515492 TGTGCACTCACCCACAATCTCTTCACCTCCAGAGGGGCTCATCATAATAGTCAGGATGAGGGTCCCCAGAATCAGAACTCTGTTTAGGATCATCCTCTTCTCCG---------TGCGGTCTCCACACTTGCTG-TTCTGAATTGTAGAACTAGGGTGAGGACCCAACAGAAAGGGGAATCTAAAGACACCCAAACC-------------------------------AAAACCTGCCAGGTCAGGTTCTGGCCAATCAGAAAAATGCCTTATGGTGACACT-GCTGTTGCCAGTTGAAGAGTTTGTACTAAGAAGCCAGAAGATACTGGGAAA a score=1544 s hg19.chr6_ssto_hap7 4523814 151 + 4928567 GACCTCATTTGAGTTCTGAGATGGGTACTCTAATCCCTCTAAGTCATGCCACTGAATGACCTTTTACACACTAAGATAGCACTTTTTCCACAACAGACCATGTCCTGTGGGTGTGTGAGGTGTGGCA---------GAATTGGGGAAATGATAATCCCTG s canFam2.chr12 5599695 132 + 75515492 GACCCCA---AAGGTTAAAGGTAGGGAGTCTGATCCCCCTA----------------GATTTTCAACACCCTGCT-TAGAACTTGCTCTGTCCCAGAACATGTCC-----ATGCAAGGGGGGTGGCGTTCTCCATGGAA---AGGGAATGACATTCCTTA a score=5325 s hg19.chr6_ssto_hap7 4523984 264 + 4928567 TTTGAGATCACCTTCAGAGCAAAGAAAACGCATAATCTCCCCAAACATCATGACTTATCTGACTGGTTAAAATGAGTATCACTGTCTTTCCTCCGTCATCTTAAGTGCATCACAG-GCTTTATATTTTCAGACCTTTCATACTAACTTTCTGCCTAGTGAGCAATGACTCATACAAAGCTCAGTGTCCATTGGTTCTTTTCTCAGACTCTGTCCAATCCCAG-GGTCACAGAAGACTACTTGGGTTCATGGTCTCTAATATTTCAA s canFam2.chr12 5600027 245 + 75515492 TTCAGGATCTGCTCCTACG-GAGGAAAATATATAAACAATCAAGACTTT-TGGCTCACCCAGTTGCTCAAAATGAGGATCCCTTTCATCATACTGTTTTC---GGTGAATCTTAACACCTTAAAGAATCATGTGCTTTATACCAAATTTCTGTCTGGTGA----CAATTCCTACTAA------------TTGGTTCCTTTCTCAGAATGTGGCCACACCCAGAGGATATGGGAGGCTGTCCAGGCTCATTGTCTCtaatattttaa a score=7229 s hg19.chr6_ssto_hap7 4524303 681 + 4928567 GCCATCCTTTTCCAG-CTCCATGAT---GGTTCTGCAGGTTTCTGCGGCCCCCCGGACAGTGGCTCTGACGGCGTTACTGATGGTGCTGCTCACATCTGTGGTCCAGGGCAGGGCCACTCCAGGTAAGAGCCGAACTGCCATTCTTGGAGGGTCTGGCTCAGGGAACAATTCCTAGGGGACGTTATCTTTAAGGGA--TCAAATTCTGAGACAGGCTGCGGGGGCTCCTGCCCTAAGGCAGTGTCCTCTCTTCCCAGCTAGAGAAAGAGGTTCATCCCCTATAGGATAGCTTGCTACCCTACTGGCCTATTCTCTCTCCAAGGACATGGGTACAGTAAACAGAGAGAGGTGCCCAGTGGTCAGTGTCTTTGGGGAAAATGGGACCAAGAGGTCCTGGATAACCTTGGACAGACAAGGTTTGCAGAGAGAGAAGTTGGCAAGTGCAGGCTCCTGGGCGTGTTCATGTCTGCATCCAGCCTGGAGGGGACTCAGGCAGAGAGCCCTAAG------CTGGAGTGTCCAGGCTCTGAGGAT--CACTGAGGATTCAGTGCTCACGAAGAATGCCTCTTATTCCCCAGGGTGGAGCAGGAGCCCACATCCCTTGGACAATTAAGGAG--------------------AGAAGGGAGGGAGGGGGATAGGTT----TTAGCCCCTGAAGGCATTCTCATTAAAGGTA--CTTCTCCCAGCCTCCCCA s canFam2.chr12 5600335 608 + 75515492 GAGAGCCTTTCCCAGGCTCCAAGATAGTGGTCCTGAGGATCACTGGGGTCCCAGGAATGGCAGCTCTCATGATGTCCTTAGTGATGCTGAGCTCCCCTTTGATTCAGAGCAGAGACATGCCAGGTAAGTGCAGAGCTGCTGCGCTTAGAGGATCCAGTTCAGGGTAATGAGCTTAGGGAGCTTTCCATGTGGGAAAAGAGAAAGTCTGAGAAAGACTTTGGGG--CCCTGACATCGTGCAAGGGCTACTATTCTCA-CCAGAAAGAGAAG--------------------------------------------------AAGATCAGGGT-----------------GTGCCT-GTGA----------TGGAGACAATGGTACCTGGTGGTCTGGAGTGATTTTGGAGGGACAAGGTTCTCACAAAGGG--GTCATCAAAATGA----------------CATTTCAACACCCATC------AGAAATCAGAAAGGGGAAATTATGGTTAGCCTGCCTTGTCCAAGAACTGAAGATGACTCTGTAGAATCAGTGCTCCAGGTAGGGGCCCCTTG---CACAGAACCAGGCAGGAACCC----TACTGGAACCAGTGAGGAACCAGTGATGGCCAGAGCAGCAGAAGGGAGTGATAAAGACAAGCTATGGTTAAAGCCCATAGGT-TACATACTGAAGCTAACCATCCCCCCACCTTCCCA a score=505 s hg19.chr6_ssto_hap7 4527607 40 + 4928567 ATGGCACTCCCTAGGAAGAACAGCATGTGGGAAAGGCTGC s canFam2.chr7 70701270 40 - 83999179 atgTCACCATCTACTTAAACTGTCATATAGGAGGATCTAA a score=32648 s hg19.chr6_ssto_hap7 4527648 555 + 4928567 AAAATTGTTCATGTAA---AAATTACATCAATGCTGTCTTCCTCGGTGCTGCCTATGCAGCTGGCAGCCATCTCTTCCTCCACATCATGGCCTCCCTCAGACTCCTCATGAAGGATAAGATCCTCAAAAAGAGGACCAACAAGTTCATGAGGCACCAATCAGACTGAAATGTCAAAATTAAGCATAACTGGCGGAAACCCAGAGGTCTTAACAGTAGGGTTCGTAGAAGGTCCAAGGGCCAGATCTTGATGCCCAACATTGCTTATGGGAGCAACAACAACAACAAAAAAAACATGCTGCCCAGTGGCTTCCAGAAGTTTCTGGTCCACAGCCTCAAGGAGCTGAAAGTGCTGCTGATGTGCAACAAATCTTACTGTGCTGAGATCGCTCACAAAATTTCCTCC-AGAACTGCAAAGTCATCATGGAAAGAGTCACCCAGCCGGCCATCAGAGTCACCAACCCCAGTACCAGGGTGCACAGCTAAGAAAATGAGTAGAAAGTTCATGTCCACGT--TTTGTGTGTAAATAAAACCATAAAAACTGCCAAAAAAAATTACAT s canFam2.chr25 30356413 557 + 54563659 aaaatttttttttaaatttaaattCCATTAGCCCTCTCTTCCTCGGCGCTGCCTGTGGAGGTGGCAGCCATCGATTGCTGGGCATCATGGTTGCCCTCAGACCTCTGGTGAAGCCCAAGATCATTAAAAAGAGGACCAAGAAGTTCATCTGGCACCAGTCAGACCGATATGTCAAAATTAAGCACAACTGGTGGAAACGCAGAGGCATTGACAATAGGGTACGCAGAAGATTCAAGGGCCAAATCTTGATGCCCAGCATTGGTTACAGGAGCAACAAGAA-AAC--AAAGCACATGCTGCCCAGTGGCTTCCGGAAGTTCCTAGTCCACAACGTCAAGGAGCTTGAAGTGCTGCTGATGTGCAACAAGTCTTATTGTGCAGAGATTGCTCACAATGTATCCTCCAAGAACCGCAAAGCCATTGTGGAAAGAGCAGCCCAGCTGGCCATCAGAGTCACCAATCCCAATGCCAGGCTGCGTAGCGAAGAAAATGAAGAGACAGCTTATGTGCGTGTCATATTTGTGTTAATAAAACCAT-AAAACTACAAAAAAAAAAtaaat a score=14748 s hg19.chr6_ssto_hap7 4528243 635 + 4928567 CTGGTTGTTGTGGTGATTTTCATTG----TGTAAAATACTTTCCACATCTTTTGACACCAAGTCTTTCTGCAGCCATGTTTGAAAA-------------TTAACTTTCAGGCTACAGAGTCTTTCTTATACCAAAGTTGAAGAAAGTTTTAAGAAATATATTTCTACATCTCCTACATGCAAAACAACAGGAGCAAGTTGAGGAATTCTCAAG-----AAACTGGT-CGAGAAGAGAGAGCGCTTAGCTATGGAAAAGAGAAAGAAGGAagggagggcttcctggaggaggtggcatttgaaccaggactgacatcaggatggaaatgtcagtcagggagttaagtaggggGAGCAGCTCCGCCCTCCACGTCCCCAGCTCCTCCCGCCCCT------------------GTTTTTTCTCCCAGT-------------------GACCCCACGTGAAACG------------------------TCTCCGCCTCCTCCAGCCACCAGCAGAAGGGACTGCCTTCCCCTCAGTGCTCGCCCCTCCCTAGTGATCACTCAG-TGCCCCTGAGC-----------------------------------------------TCATTCTTTTC----------------------------------------AGTAAATTCTCTCTCTGCGT-GGTGAGAAAACAGGCCTGGAGAGGCTCTGCGACCCGCTTAGGACCACAGAACTCGGTACTAGGAAAACTCCTATTTTAAAATCCAGCCCTG-GGTGGGAAGATTTGGGAAGAATCGTTA s canFam2.chr12 5583582 750 + 75515492 CTGGAGGTTGTGGTATTTTTCATTGATCAGTCAAGGTACGTTCCACGCCTTTTGAGGCCAAGTCTATCTATGGCAATGCTTGAAAGGTGAAAAGACATGTTAACTTTCAAGCTA---AGATTTTCTTACACCAGGGTTTAAGAAAGCTTTGTGAAGTTTATTCCTCCATTTCCAGCACGCAACACTACA-----AACCTGAGGTATATTTAAGATGTAATACTGGCAAGAAAAGAGAGAGAACCTAACTGTGGAAAAGAGAAAgaaatgagggaaggtttcctggagga-gtgacatATGAGCCAAGACTGTC----------CAATAGCAGGAAAGGAGTCA--------GAACAGC-ATACTCTCCATTTCCCCAATGTTTTCTGTCTCCGCAATGCCTCCACCTGAGGCCTTCCCCACTAGTGAGTTTCTGCCCCTCCCTGGACCCCACAAGAAATATCGCCTCCACAGAAGCCTTCATGTTCCCCTCCTCCTCCAGCTGCCAGCAGAATTGATTGCTTTCTCC----------ACCCTCTCTAGAGATCACTGAATTACCCCTTAGCATTGAGTCACGTTTTATATACTTATGTATATCTATGCGTGTTTACTTTTTTTCTTTTCCCTGTGAAGGGCCTATTGTTTAATGTTCAGAAATCATTTGGTTGAATCCTCTCCTCTCATAGGTGAGAACACA------GAAAGGTTCTGTGCCT---------------AACTCACTATTACAAAAGATAGTTTTTAAAAATCCAACCCTGAGGTGAACTGTTTTGAGGAGAATAGCTA a score=6731 s hg19.chr6_ssto_hap7 4528942 348 + 4928567 CTCCCCGCAGAGAATTACCTTTT-CCAGGGACGG---------CAGGAATGCTACGCGTTTAATGGGACACAGCGCTTCCTGGAGAGATACATCTACAACCGGGAGGAGTTCGCGCGCTTCGACAGCGACGTGGGGGAGTTCCGGGCGGTGACGGAGCTGGGGCGGCCTGCTGCGGAGTACTGGAACAGCCAGAAGGACATCCTGGAGGAGAAGCGGGCAGTGCC--GGACAGGATGTGCAGACACAACTACGAGCTGGGCGGGCCCATGACCCTGCAGCGCCGAGGTGA----------GTGAGGG-----CTTTGG-----GCCGGCGGTCCCAGGGCAG----------------CCCCGCGGGCCCGTGCCCAGGGCGCAGGAGCAGCCGGG s canFam2.chr12 5608764 378 + 75515492 CTCCCCTCAGAGCTTTACTGTCTACCAGAGACGGAGCACCTGCTACGAGCTCAACGAGCTCAACGGGACGCACCACTTGCT----ACACACA-----------GAGCTCTTCGCGCAATTGGACAGCGCGGCGGGGGTGTTCGCGGCCGTGTCCGAGCTGGGCCGAGTAACTGCCAGGAACTGGAACGTCCC-CGGGAGTTCCTGGCACTGAGACAG--AGCGCCGTGGACACAGCGTGCAAGCACATCTTCGACCTGGACCAGGGTTTCACGCTGCAGCGCAGAGGTGACAGGGCGGGTGTGAAGGAGACACTCTGGGAGGAGAGGGCGGGGCTTGGGCAGCAGAGGAGGGGAGCGCCCCAGCACCCCCCTCCCCGCGCCCCAGAGGAAGCCAGG a score=4874 s hg19.chr6_ssto_hap7 4532375 317 + 4928567 TCTTCATTTTCTTTGTATTTTCATGAAGTTATTAGATTCACAGGCCACCATAATGCCATTGTCTGTATATCTT--AATTTCAAGATATTATTTGAGTAAATTTTGCTTCCTTTGTATCAAGATAGAACTTTGAAAAGGTAGGTAATTTC-ACAGTTGATCAAATATTCTTTGCCCAAA---------TTACTTTTGGTTAAAATTTCTCCTAAATGTGCTACAGAGTGCAAACTCTGTCTCCCTGCCATTCC--GCTATATACTTACTAACTATTATTTTATTCAAGATCATGCATGCTCTACTTGAAGGTCTATTTCTATCTTTTCAA---TG s canFam2.chr12 5609410 324 + 75515492 Tatttcttctcttt---ttttaaggagaggatcagactgctagatcaaaggaaatctataggctgaatatattcggatttcaagatagtatctctcaggattacacatccttttgacccagatgagaacatgtaaattcagggagctcccatagctggttcaagatt-tctgctcaaagaattttagttactgtcacttacatttctggcaaaaaatgttacagagcacagactctggccctcttctgttcTTTGCTCTTTCTTTACTGGTCATT------TACAAGGTCATTCTTAGAACATTGGAATGTTTCATTCCATTTTTCCTACTGTG a score=5496 s hg19.chr6_ssto_hap7 4532692 91 + 4928567 CTACCCTTACCCACTAGCCTAATCACATTATTCCTATTTTCAACATCTAGGAATCAATTACATAGTGAACATGCCTAAGAAATAATAATCT s canFam2.chr12 5594767 91 + 75515492 CCATCTGTATCTACTAGCCTAATTACATCATTTATATTTTAAACAGCTAGAAATCAACTCTATAATGAAAATGTCTAAGAAACAATAATCT a score=80872 s hg19.chr6_ssto_hap7 4533212 2219 + 4928567 TTTCTTCCACGCTCCTAGTCCAGCCTAGGGTGAATGTTTCCCCCTCCAAGAAGGGGCCCTTGCAGCACCACAACCTGCTTGTCTGCCACGTGACGGATTTCTACCCAGGCAGCATTCAAGTCCGATGGTTCCTGAATGGACAGGAGGAAA-CAGCTGGGGTCGTGTCCACCAACCTGATCCGTAATGGAGACTGGACCTTCCAGATCCTGGTGATGCTGGAAATGACCCCCCAGCAGGGAGATGTCTACACCTGCCAAGTGGAGCACACCAGCCTGGATAGTCCTGTCACCGTGGAGTGGAGTGAG----TCTCTGATGACCCTCTAGACCCC-ACCTCTGAAGAGCAGGGGACTCTCTGGCTCTGGGGTCCACTCATCTTATCTTCTGCATCTATACCCTGGGGCCATGTCCAAACCCCATCTTTCTTCTATACCAGCTCCTGAGCATAGTTTGAAGCCAGGGAAATGGAGACTTCCTGACCTTGGCTTAGGGGTTCCTGAAGATTCATAGTTCTCC-CCCTTGTCAGAGAATCTAGGGACACTGACTGGTCTCGAAACCCTCACACTTAGGAACTGACCTCACACATAGGAACAGTTCTCTTCCTTCAGCATTTTAGCCTCTTCTCAGGCATTTTGAGAGGCAACTTCCAGAATCAGCA--TTTGCCACCTTGTTGAGGTCACACCCC--TGTTCCAGATATGAGGGTGGCTCTTTCTGAATTTCCTCTTA--GCAAGCTTTTTCCGCTGCACTGTCCTCATCCCGATATGCTGCATCAGGCTCCAGAATCTCAGACAGGACATGAGTAGGGATGCAGCTGGTGGAGGTGACACTAAACCTGGGTCTGTCCTTCCCAGAGGCACAGTCTGATTCTGCCCGGAGTAAGACATTGACGGGAGCTGGGGGCTTCGTGCTGGGGCTCATCATCTGTGGAGTGGGCATCTTCATGCACAGGAGGAGCAAGAAAGGTGAGAAAGCCTGCAGGGTGAGCGGGACTTACCTTCCCCTGGCATATTCACACTTATTCCACGATGAGGGGTTTG--ACAGAAAAGAAATGTCAGAAAGCTCTAGAGGCCACTGATATCAGATAATCGGGGAACAAACATGACCTATAGCGAGAGAGGGATCCCAGGCTGGGATCTTAATGCAGCCAGATGCATGAGGTC-CCAAGTACTCAGGCTCCTGCGGAGCGTCCATTGAGTGATG------------------------------------------------GGCAATGGAATTTGGTGGGATGGAAATGTTTCTCTAATTATCTGAGGTGGTTTCAATGGCTGATTATATAACC-TTTCGTCTTTCATTTCAGTTCAACGAGGATCTGCATAAACAGGTAATATTCCTGCTTTGATTTCCTTGTGGGGTGGGTTGCAGGAGGATATGAGTCCTTTCTGTGCATTGTAACACTGAGGCTCCTCCAGGAAGGGAATCTCAGGCATGAACCCCTCTTTCAATGTCAGCCTTCAGGCAAGTGGGGAAA-GAGCATTGCTTGGCTCCATTGCTGAAGGAAGCAGAGATCAACTC-TGTTATTTATCAGCCTGAGACGCATCCTCTCACCATAATTTTTCTCTCCTG-GACTTACAGGAAGGAG-GCTGGCAACCTGGGATAACTTGT-CTTTTACCCCCAC-AGGGTTCCTGAGCTCACTGAAAAGACTAT-TGTGCCTTAGGAAAAGCA-TTTGCTGTGTTTCGTTAGC------ATCTGGCTCCAGGACAGACCTTCAACTTCCAAATTGGATACTGCTGCCAAGAAGTTGCTCTGAAGTCAGTTTCTATCATTCTGCTCTTTGATTCAAAGCACTGTTTCTCTCACTGGGCCTCCAACCATGTTCCCTTCTTCTTAGCACCACAAATAATCAAAACCCAACATGACTGTTTGTTTTCCTTTAAAAATATGCACCAAATCATCTCT--CATCACTTTTCTCTGAGGGTTTTAGTAGACAGTAGGAGTTAATAAAGAAGTTCATTTTGGTTTAAACATAGGAAAGAAGAGAACCATGAAAATGGGGATATGTTAACTATTGTATAATGGGGCCTGTTACACATGACACTCTTCTGAATTGACTGTATTTCAGTGAGCTGCCCCCAAATCAAGTTTAGTGCCCTCATCCATTTATGTCTCAGACCACTATTCTTAACTATTCAATGGTGAGCAGACTGCAAATCTGCCTGATAGGACCCATATTCCCACAGCACTAATTCAACATATACCTTACTGAGAGCATGTTTTATCATTACCATTAAG----------AAG s canFam2.chr12 5595063 2182 + 75515492 TCTCTTTACAATTCTTAGTCAAGCCTAAAGTGAACATCTCCCCTTTGAAGAATGGACCTCTATAGCACCTGAGCCTTCTTGTCTACCATGTGACAGATTTCTATCCAGGCTACATTCAACCCCACTGGTTCCTGAATGGACAGCAGGAAAACAGCTAGAGTTATGTCCACCAACCTGATCC-TAATAAAGACTGGATCTTCCAGATCCTGGTGATACTGGCAATGACCCTTCACCAGAGAGATGGCTACACTTGCCAAGTAGAGCACCCCAGCCTGGATGGTCCTGTCACTGTGGAGTGGAGTGAGTTACTCTCTGA------GTTAGGCCCTAAATTCTGAAAAACAGGGAATATTCTAGTTCTGGGATCTACTCATTTTGTCACAGG--TCTATACGTGGGGGCCATA-CCTATCTCCATCTTTTTCCTAGAGAAGTCCCTGAGAATAGTTTAGAGCTGGGGCAGCAGAGACTTGCCCACCCTGTCCTAGGAAATACTAATGATTCATAGATCTCTGCCCATGTCAGAAAACCTAGGAAA----------CTCAAA-----CACCTTCCTGAATTATCCTCACATGTGAGAACTGTTAAATGCCTTCAGCCTTTTAGCTTATG-TGAGTTATTTTGAGAGGCAGCTACCAGAATCGGCATGTGTGTGTCCTTTTGGAAGTCACAGCCTAATTTTCAGAACTTGGGGGT---TCTTTCTAAATTTCCTCCTCCTTCAAGTTTTATATCTCTCACAGACCTCATATTGGTATTCTATATTAAGCCCCAGAATCTCAGACAGTACGTGAGGGGTGGTGCAGCAGGTAGAGGTGAAAATGACCCCTGGTCTGTGTTTCCCTGAGATACA--CAGATTCTGCTCAGAG--AAATACTGGCTAGACTCTCAGGCTTTGTGCTGGGGCTCATCTTCCTTGTAGTGAGCATCTGAGTGCATACTAGGAGCAAGAGAGGTAAGAAAACCTGAGAGATGGCTGAGGTTTGCTTTCCCCTGACTTACTCAACCATCTT---CAATTAAAAAACTGATACAGAAAAACAATACCAGAGAATCCTGGAGTTCACTGAAATCAGATTGTTGGGAAGCAAAAATGGCTTGTAGGAAGAGAGAAATCCCAGGCCAGAATTTTATCCCAACCAGATGTATGGAGTCTCCAAATACTCTGGTCATGTCTGA--GTTCATTTAGTAATGAATTAGTCTTCAGCCAGCCCCTGCCTTACTTCCCAGTGATTGGACCATGGCAATGGA----GATGAGATGGGAAAGTTTATCTAATTGTCTAAGATTCTGTTATTAGGTGAATACATTCCCTTTTCTCCTTTCATTATTCTGTGATGAGGATCTTGAAAACCAGGTAATACTCCTGCTTCT-TTTTCTTG-GGAGTGGGTTGCAGAA-------AGTCCTTTCATTGCATCCTGACTCTGAGACGCCTACTGGGAAGAAG-----------------------------------CATACAAGTGTGGAAATGAGCATTACTTTGCTCCATTGATGAAGGAAGCCCAGAGAAACTCTTATTTTTCATCAGGCTAAGACTCAATCTCTCACGA-AATTTCTCTTTCCTGAGATTTAGAGTAAGAAATGTCAACAACCTGAGACAACTTTTCCTTTTACCTCCGCTAGGGTTCCTGATCTGACCCAAAGACCTGCATGTGACCTGGAACAAGCATTTTTCTATCTTTCCTCAGTCCCAGAGGCTGGTTCCGGAAAAGA-CTTCAGCCTCCCAAGAACATGTTACTGCCAAGTAATTGCTCTGAAACTAGTTTCTATAGTTGTTCTCTTTGATTCCATGCACACTTTCTCTCG--GGGCTTCTATCCAAGTTCCTTTAGG-GTAGTTCCATGAGTAATAAAAAGCCAATGTTAAAGCATATTCTC--TTAAGAATATGCACCAAGTCATCTCTGCCACTGCCTTTGTGTGAGGATTTTGGCAAACAGTAGGAGTTCATGAAGAAGTTCATTGTTGTGTATACACAGGCAAGAAGGAAAATGTGAAAA-GGGGATATTCTAACTATTGGGAAGGGTGACAAATTGGACATGGACCTCCTCTGAATTCATACTCTATCTTTGGGCTGCCCCATATTTGTATTTGATACTTTCATTCCTGGAGGCCTGGGACC---ATTCTTAGTTATTCAAGGATGAGCAGATGGTGAAT------------------------ACAGCACTGACTCAACATACA------TGAAGAC-TGTTTTACCATTACCATTAAGAAATCAAATTAAg a score=5142 s hg19.chr6_ssto_hap7 4535431 108 + 4928567 TTAAATGAACATCAGAATTTAAAATCATAAATATAATCTAATACACTTTAACCATTTTCTTTGTGTGCCATCACAAATACTCCTTAACCAAATACGGCTTGGACTTTT s canFam2.chr12 5597444 103 + 75515492 TCAAATTAAGATCAGAATTTAAAATTGGAAATATAATGTAATAAACCTAAACCCTTTTCTTTG-ATACCAT----GATAGTCTTTGACCAAACAAGGCTTAGCCTTTt a score=16419 s hg19.chr6_ssto_hap7 4535584 584 + 4928567 CCACCAGCCTAGGCCTCCTGTCTTAAT-TTTCATACAGACAGAAATGACTCCCCACTGGGGAAAGAGCAAAGCAATACATGTAGCACTCTTTTTCAAACACTGGTCTTTTTTTTTTTCTTAACAATCCAACATTGTTATGTGTTTTGCGTCTCATATTGACACCTTTTG---GTCAAGGTAGAGGACATGTTTGTTGTAAGCTTTCTTTTTCGTGTAGAGGATGGATTCTTCACTCCTGATACACACAATCAGTGCACAGCAGCTCTCTTATACATCCAGTTGATGCCTTCAGTCTCCCTGGCTTCTTACAAGCATCTTCTGGGCCTTGTGTGTCCCTGGGCACCTGTCCCTGGTCAATTCCCGAAAGCTACTGTGCTCCTCTTGCCCATCTCCCCTTGCAAATAATATCTTCCATCGGGGGACCGGCTTCCTCCAATTTCAGGAGAGG-TGGGGCTGAAGGCACAGACTTGGGCGTCACTGGCACAGATATAAGTAAATACAGCTGGAGTCTGCAGAGAGGCTG----GACTGAGTCAGGGAGTCAGGAAAGAGAAGCCACACACAAGGACAACCAATCATGTTTCTCATAA s canFam2.chr12 5597771 538 + 75515492 CCACC-----AGGCTTCCTGTCGTAGTAATTCACATAGTGTTAAAATGCT-----------------CAAAGAAATAGATGCAGTTCTCTTTTTTAAACATACGTCTGCTTTT--------ACAATCCAAAATGATTACAGGTTTTCTGTTTTACGTGAAATTATCCTGAAAGCCGAGCTAGA-----------TTCTAAGTAGTTCTTTTTGCATAAAGCATGGAGTATGACCTCCTGAGGCACATACTGGGGACTCAGAAGATCTCTGACATACCCAGGTGATGCCTCCTCTCTCCCTGCCTCCTCACAAGCAGCTCTTGCCTCTTGTTTGCCCCTGGGCCCCCCTGCTCCATCAGTTCCC----ACTGCT-TGCTCCTCTCACACTGCTCCCCTCCC--ATCATGCCCTGCAT---GGGACCAGCTTCCCCCATTTCCAAGAGAGGTTGAGGCTGAAGATGCAGAAGTGGGTGTTACTGACACAG----GAGTTAGCATAGTTGGGGTCTGTAGAAAGGTTGGGGTGATTAAGTGTGGGAGCCCAGGAAGAAAGGCCCTGAGCATGGCAAACCAACCATAACTCCCATAA a score=22528 s hg19.chr6_ssto_hap7 4536607 613 + 4928567 CTCATGTTACAGGTTAGGGCAGTACCCC-----------------GAGTGGAGTGAACAATCTCTGGACTAACACTTGTCAGGATCAGAAGCTGAGGTATCTGCACCCACATTACAGGAACAGGATATGTGCTCCTAGGGAACTGAGGGTGTCAGGAGATGAGGAATGTCCCTGGAGTCACAGAAAGAAGGTATCAGATGTGTCTCACTCTGACATATGCAGGTGTTTATGAAACTCTGGGATTTCTAAGGAAGGATGCAGTGCAGAGACAGGTCCCAGAGGAGACAAGAGCTGAGAGACCATCCAAACT-GGGACCACCTTGTCACTAGACTTCAAATTTTCAATATTGATAGAGTGTTTTCTAAGAGTCAGGCCCTTTGCTGAGTGCTATGTGC-AGCAGGATCAAAGGCAGCCAGGAGGTAGAGGAGTCTTGAGGTACATCAGTCATTGGAGTTGAAGAG--CAGAGATTCAAAGGAAAGTTGGAACTGGAGCTTTAAAGGAGATGTGAAGTGGGTGACTCAA---------CCTCTGACTCAGAAAAATTGATACCTGCAGAAGAAAAAACCCGGCGGGCTTAGGACTCCCAGCTGAGTGTTGTATCCTCCATCCCTTTCCACCTGGTCCCTTCATTTT s canFam2.chr12 5601654 609 + 75515492 CCCATGCTATAGGTTAGGGAAGTACCCTAACTTGGGGTACTTGGGGAGCAGAGCAAACATTATCCAGACC------TGGCAGGCTCAGATACTGCAGTAACTATATCCACATTACAGGTCCAGGATATGTGCTCCTAGGGAATTGAAGATA---------GAGAAAAGGCCCTGGAGTCAC--AAAGAAGGCACCAGAGATGTCTAGCACACAC-------GGTATTTATTGGTCCTTGGGATTACTCAGAAAGGATACTCTGTAGAGAGGAGTCACAGAAGAAACCAGGGCCTATAGACCATCCAGTGTGGGGGCCAAATTGTCACCATACATCAAA-TTTCaacatttattaagtacttcctatgtatcaggccctttgcag-gtgctaagtactagtaggatcacagacagGAAGGAATTGGAGAGGTCTTTGGAGACATCAATCATTGGTGTTGAGGAGCACAGAGATTCAAA--------GGCACTGGACCTTTAAAATAGATCTGATGCTGGGGATTCCCCTATGTCCTCTTCTGTCACATATGGGTTGTCACCTGCAGTAGAATAAACACAGTGGGGTTGGGACTCTTGGGTTAGCATTACATGCTCTAGCCCTTTACACCTGCCTCTTTTTTCTt a score=39549 s hg19.chr6_ssto_hap7 4537602 1007 + 4928567 CAATTTCTTTTACACAGTAAGAATAGGATCAGCTGTGCTAAACTAACAAATACCCAGATATCCAGGTTTGgctcatgttacacgtccaaagtaagtcatgcaggaagctctgctcatcatcgt-actcaggaagtcaggctgacagtctttctcctgcacatctgctcccagaacctccccagcagaatgaagggaacctaagaatttattcactggcttttaatgatccctcctagaaagaaca---cacttctcgcatttcattttccaatgtaaatcatatggctgcaactaacttcaaATAAGTGGGAATACTTGAAGGTGGAAAACATTTAAGAAGTACACACTAAATAAATAATAAAATACTTCTAcaagagatatttatggaggacctactgtgtaccaggagcaatgctaggcattatggatatcagcagCCTTTGGCTCCTGAAAAGCTTACACACTACCTCCTGGCCTAAGgaggggcacagggatgctggcaacagtctatttcttcacccgggtactagttacatgggtgcttgcggtgataaccattcaacgtacattctattggtttgtgtgtttcttccaaatgtcccctagttcacaatagaaaggGCTTAAATAGAGAAGTAAAGGAGAAT-TTGGGAATTTGAAGCAAAAGCAAGAAGCCACTGAATCAAGCACAAATATTGAGCTTTGATAAAGattggaataagaaacataataaatgagacaagaaataggacttttgcaactgaagtgtaattaataaacaaaaagccaaactgagaaactgtcccaaggacaat-----------------atgatcgagtaaacaatagaaa--atgtaaaggacaagtgaagagaaatgaaggatagaaacagacat-ctgacatcttaataattagacgtctagaaagtcagggaaatagtggaggaagaggaaataactgaaa-acataatagatgtttagtctttatagaaagatgaaATAAGTTCATTCAAAATGCTGCATAGA s canFam2.chr12 5602752 988 + 75515492 TCTTGCATTTTATATAATAAAAATAAGATAGGAGGTACTGA-TGCACAAATCGTGTGATgtctagctttcactcatgttgcatgtccagtgt--gtcagcaagatagcgctgctaattatagttactcagggagcaaggctgacag-----atctttgacacctgttcccataatttcccaagcagagtgaagg-accctactgaatcatacaatggctcttaatgatccctcttggaaataatgaatcacttctcacatttcattatacaaagcaaatcacatggat------aatttcaaaagagTTGGAATCTTTGGAGGTAGAAAGTATTCCATAAGTAGACATTAAATAAATGATATATTACTC-----------ACTT---GAGAACCTACTATGTGTAAGGAAGTATGCTAGGTCTTGTGGGTAAAAGGAGCTTCTAGCTCCTAAAAGGTTTACAAATTATC------CCTAAagaggacctctggggtgttggcaatgttcttttccttgacctaggtactagttacatgggtgttcact-tgacaatcattggctgtacatt--aatgttttgtgtatttcttacatatgtctgctagttcacagta-aaaTGGTTTAAAAGGAGAGGCAAAGAAGGATATTGGTAATTTGAGGCAAAAACAAGAAATCAATGAATCAAGTAGAAATAATGAGCTTTAATAATGGTTGGAATAAAGAATAT-TTAGATGAAACTAG---TGGGACTCCTGCAACTGAAGAATAATTAATAAACAAGAGCTCAGACTGAGAAATACTCTCAAGGGCAGTATACGAAAGATTAAACAATGAAAGATTAAACAAAAAAAATGATAAAAAAGAAAAATGATAAGATATAAAGGATCAAAACTGACATCCTGGCATCTTGATAATTAGATACCTAGAAAGTGGGGAAAATAGTAAAAGGAGATGAAATGTCTGAAACAAAGAATAGATTGCTAGGCTTTAAAGAAAGACGGAATGACT--GTTTGACATAGTGCATTGA a score=28831 s hg19.chr6_ssto_hap7 4539816 649 + 4928567 aacacatgagaagcacttagaatagtgcctagaacatagtaagcaactcaatgaatgtcatttctcattACATTTGTTAATGTTTTTATCCAGCCCAATGGCAGTAAAACATCAA-TGCTCAAAGAGCCCCTGGTGAAGTGTTTCTCTTTCCCACTCTTCACCCCTAACTTGTTACCTCGTCTTTTCCACTCTGTCCCTAATAC-ACCTATAGGATGACTCATAGGAGCCCCTGGACCCGGGGATGCTGTCAGATCGCTTGGTCTTTGAGACAATGGTGCCATTAAGGACCCCCGCCAGGCCCACCAGCAGGCCGAGGGCACAGACCAGCATCTCCATGGTCTCAGGCACCTGGATTAGTTCATGGACCTCTGGGGCACCAAGGGAAGACAGAGTTATAAGGTACAGAGAGCAGGGGCTGGCCTTGGATGTGGGAGGTGTTGGGTATTCGAAACCATGAGAT----GGTGAAATTTGGATAAAGTGACCATAAAACAT--GGGATTGAGGAAGGCAGGTGCTGAGGGGCGATGGGCCCAGGAAATAAAGGTGGT-GCCAAGGCCGTGAGGGCAGAGGGAGGGCGCTCCATACCCCAGTGCCTGAGGAGAGGCTGGTGCAGGCCCCAGTGCTCCCCCTGGAGGTCACAGGTGTCCTCGG s canFam2.chr12 5607614 638 + 75515492 AACACCTAAGAAATTTAtagaatggtgcctggtaaatagtaagcacctcaactgatgctcattatcattGTATT-------GTTTTCCTTTAGTTCAGTGATTTTGAAATGCAAAGTGCTCAA-GAACCCGTGTCGAAGTTCTTCTCTTTCTCATCTACCACCCATACCATGCTGTCTCTTCCTTTGCACTGTGTCCTTAGTACCAGCTCTGGGATGACTCCCGGGGGCCTCTGGC------AATGCTTTCAGGCCTCCTGGTCTTCAGGACAATGGCGCCAGTGATGATACCTGCCATGCCTGCTACCAGACCCAGGGCACAGACCACAGTCTCCCTC-TCTTAGGCACCTGGATCAGCTCCTAGGCCTCTGGGGCACAAAGGAAAGA----GTTAGAAGGTGCAGAGGGCAGGAGGTGGCTTCAGATGTAGG-GGTATAAAGGATTAGGAACCATGAGATCACCAGTGAGGTTTGAATAAAGTGACAATAAAACACACGAGATTAAGGAAAGCAGATGCTGCAGAGAGATGGATCCTGGAAATAAAGATGGTTGTCAGGACAGCGTGGGCAAAGGGCGGGAGTTCCATACCCCAGTGCTGAAGGAGTGGCTGGTCCAGGCCCCAGTGCTCCACCTTGCAGTCATAGATGTCTTCAg a score=8624 s hg19.chr6_ssto_hap7 4540465 218 + 4928567 CCATGGGAACGAGGGTCAGATAGTGGAACCTGTGTAATCTGAGTTTCTTGCTGGGCAGGAAGATGGTCTCTGCAATACCCTCAATGACTGGCTCCCCATTGCGCAGCCACGTGATGTTCAGCACTGGTGGGAAGAACTTGTCAACATGGCAGACGAGGGTGTTGGGCTGGCCCAGATCCACAGGCTCCTTGGGAAAGACGCTTACCTCGGTGGGGGCT s canFam2.chr12 70375418 218 - 75515492 CTGAGGGCAGGAAGGGGAGATAGTGGAATTTGCGGAAAAGGTGGTCTTCTCTGGGCAAAAAGATTGTCTCTGACACTCCTGTGGTGACAGGGTTTCCATTTCGAAGCCACGTGACATTGATCACTGGTGGGGAGAACTTGTCGATGAAACAGATGAGGATGTTGGGCTCTCCCAGTTCCACAGGGGTGTTTGAGAGCACAGTCACCTCTGGAGGTACT a score=5886 s hg19.chr6_ssto_hap7 4541169 366 + 4928567 GTGCCATTTGTGGCCCAAGTCTGTTTGGACCA-TTGATCCGGGTGTTCAAGTGCTTCCTTGCCATGACGATGCCAGCAATACCCCTCTGAGCACCAAAGTCAAAGGTGTGAATAAACTCTGGTAGAGGCCAGACCATCTCCTTCTCATCCAGGTTCACGTAGAACTGCTCCTCCTCATCAAATTCAAACATATACTCCCCAGAGGGTCTGTGCGTCTGCACAAACTCCGCATATGTTGACACATGGTCTGCTGCATGAAGGAGAAGATGGAGAAT--GGGTGAATAC-----GTAGGATGCTACACAGAATGCAGGAAG-----CAAACA----------GGTAACAGGAAGGTTATTGGGAAC-----ATGAAGGAATAACACaga----aaatgag s canFam2.chr12 70376090 393 - 75515492 GTACCATTGGTGTTCGGGGTGTGGTTGGAGCGCTTTATCATTGTGTCAAGGTTAGCTTTGTCCACAGCTATGTTGGCCAAGGCACCCTGGGCCTCAAAGCTGGCAAAACGTCCAAATTCTTCAAGGCGCCACACCGTCTCCTTCTTTTCCATATCCACGTGGAAAATCTCATCACCATCGAAGTCAAACATGAACTCGCCTGATGGGTCAGGGGTCAGATAGAACTCAGCCTGGATGATTACGTGCTCCTCTG---AAAAGGCAGGGAAGAGAGTTAGGGTGGAAACCAGGAGCAGGAGAAGAAGTAGAACCCAGGATGTGAGACAAACATGTGGGTGTGGGCAGTGGAAGGG--ATTGGCCATGTGGAATGGAGGAATGATAGAGAGCAGAAATGAG a score=31637 s hg19.chr6_ssto_hap7 4551926 592 + 4928567 TTGGAAGGACCCTCCGGAGTTCTGAGGAGGAGGCCTGAGCATATGTGGGG-AAGGCACAGATGAACACATAGGAGGGATCTCTAAGAAAACAATGGCCACCAGGTCACTGCTAGACTCACCACAGGGCCTTCTAAACCAGGGGGCCCCTCCACGAGCATACCCTGTGGAGTCAAAGGTTAAAACTCACAGGTGACAGGGCCAGCACACTAAACCCCACTTGCTTCTCCTCTTTCCACCACCTCAGCCCTGTGACCAGCA-TGACTTACAGGTTCCAGCACTGCAGGCTCTCTCTTCTCTCCCTTCAGCCCCCGGGGCCCATGGGCAGCCTAAGGGAGACACACATGTAACCCC-AGTGGGGCCCATGAGCAGCCAGGACACCAGGCCTGCCCCCATCTCAACTCCAACCT-----CGATTTTGGGTCCTCTGGAGACCAGACCAGCCCTACCCACAAG-CCCCACAGGCTTCCTCTAAATACTTCTGTTCACAAAACTCTCATGCCTGCCAAGG-----------------AGATCTCAGGGTTCCCTGCACCCCAGTTCTCAGTCCCACCTCAGCAAACACAACCTCTCCAAATCCTGAAGAGCCTCTTTCAGAAAG s canFam2.chr12 5648647 603 + 75515492 TTGGAAGGATTCTCCAGAGTTCTGAGAAGGAGGCCTGGGTATATGTGGGGGAAGGCATAGGTGAGTGTGTAAGAAGGGTCTCTGAGAAAA----GGCTAATGGGTCACAGCTACACTTACCGCAGGGCCTTCTGGGCCAGGAGGCCCCTCGACTAGCATTCCCTGTAGAGTCAAAGGTTAAAAGTCAGAGACTATAGGGCTAGCAC------CCCCACTTCCTTTTCCTCTTCCCCCTGCCTTTA----GTGACTAACAGTGACTTACAGGCTCCAGCACCGCGGGTTCTCCCTTCTCTCCCTTCAGCCCTCGGGGTCCTCGGGCAGCCTGAAGGAGACACACATGTAACCCCCAGTGGGGCCTGTGAGCAGCCAGGACACCAGGGCTGCCCCCATCCCAACTCCCACCTTCCTTCACTCTCAGATCCTCTGGAGACCTCTCCAACCCTACGTATAAAATCCCCCAGCCCTCCCCTAAGACTCCCTCTTCACAGACCACTCAGGCCTTCCAAGGCCTTCCTGCCCTTCCACAGACCACAGGGCTCTCCACCTCCCAATTCGCAGCCCCATCTTAGCAAATA-AACTTCCTCATATCCTTGTGGACCTCTTTCAGGAAG a score=435 s hg19.chr6_ssto_hap7 4552518 18 + 4928567 AGGACTTTGAG------------TCTTTCA s canFam2.chr12 5649354 30 + 75515492 AGAACTTTAAGAAACTATCAACTTCCTCCA a score=47003 s hg19.chr6_ssto_hap7 4552536 919 + 4928567 GTCTTTCTCCAAAAAAGAAAAGGTATATGCCCTTATGCACAAAATTTTATTTAGAATTTGAAGGAGTTCAAAAATGTAAAAACCCTGCACAGGTTAAGTATCCATACTCCAAGTAAATTTGGAGAGCATTTCCCAGAGATATTCCAAACTCAGGCCTCATAACTGCCTTTTGCAAAACATACAGTTCTTGGGCTCAGTTATCCAAGCCCCAGAGCAGCCCCCTACAATGCACCCCACAGTTCCTCTCCCAGCA-GGATGCTTTGCCCTTCTTCTGGCCCTCATGTACACTCCAAGCC-AACCAGTTCCCTCCCTTGCACACCTCCATTCAGATGCCTGTTCCCAA-ATCCAGGCCATAGCCAAGATAAGGGTGGGGAGAAGGTGAAACATTCACCACCACCC--CAACTCCCCAAAACAAAGATCTTCAGAATGCCCCTCTCCACCTTCATCCTGAC-----AGCAATGATCCGTTTCAAAATTCTCCCAGATCCCACATCAACCCCAAAGACCCAGACAGCAGCATAAAGGAAAGGCAGCAGAAGCTCACGGGTGCCAAGAGCAG------GAGGTGTGGGATGCAGCAGCAGGGTAGAAAAGGCAGCCATAACTGCAAGGCAGGCAGAAGATGTAGCAGAGTAGACAGGAAGCAGTCCAACTGACAGAGAATACTGGAAGATATGAGAA-CAACTAAGGGACACAAAATAAAATGACAAACACTTGGATGCAAGAGTGATGCCAGGGCCAAGGAAAATTAAACATGGCCAAGATGGCCACAAAACAAACTGGACAAACAGGAAGTGGCTGTACAGACAGGAAGCAGCCAAGAAAAGAGGATCTGGGAAGTGAACCTT---CAACAATATGGCTACCATGACCCAGAGTGAAAAGAAAGGCACAAAACAGGTACAATGGGACTCCTGCAGAGGGAATT s canFam2.chr12 5649493 912 + 75515492 GTCTTT-TCCAGGAAAGAAAAAGTATATGCCCTTATGCACAGAATTTTTCTTAGAATTTCAAGGGGCTCACAAGT-TAAAAACTCTCCAGAAGTTAAACATCCATACTGTAAGTGGAATTGGAGGGCAGTCCCCACTGATATCCCAAACTCAGATCTCATAACTAGTTTTGGGAAAA-ATATAGCTCTTGGGCT--GTTGCTTAAGCCCCAGAACAG-------------ACTCCCTAGTTCCCCTCCCAGCAAGGACACTACACTCTTCCTCTGGCCCTCATTTATATTCCAAACCCAACCAGTTCTTTCTTTTTCATACTTC---TCAGATGCCCACCCCCAACACTAAGGCCAGAACCAAAATAAGGATGGGAAGAATGGAAATTACTCTCCACCACTCTCCAACTCTCCCAA-CAAAGATCTTCAGAATGTCCC-CTCTACCTCCATCCTGACCCAACAGCAATGATGAATTTCCAAACTCCCCCATATCCCAGATCAACCCCAAATTTCCAGAAGGCAGCAAAAGGGAAAGG-AGCATAGAGTCA-GGGTGGCAATATTAGAGAAGGGAAGTGTAGGATGAGGTAGCAGGGTAGAGGAGGCAGCTCTAATTGCAAGGCAAGCAAAAGATG-AATGGCGTAGGCAGGAAATATTCCAACTGAGATGGAGTGGTTGAAGACATGGGAAACAATTAAGGGAGACATTTCAAAGGGACAAACACTTGGAAGCAAAAATGAGGTCAGGGCCAAGAAAAATTAAACATGGCCAAGAGGGCTAGAAAATGAACTAGACAAACAGGAAGTGGCTGGACAGACAGGAAGCAGCCAAGAAAAGAGGATCCAGGAAGTGGACCTTCAACAACAACATGGCTACCATGA-CAAGAGAAAGAAGAAGCTCACAAAACAGACAAAAAGTGACTCCTGGAGAGGGGATT a score=80084 s hg19.chr6_ssto_hap7 4553455 1907 + 4928567 ATGCATGCAAGGCTTAGTGGGTAGATGAGCGGGAGGTACAGAGTAGATGGAATCAGAtgagtgaatagatagatgggtggaattgaatacatggttgagtgaacggttggatgtgaagtgagtgggtgaggagatgggtgcatgagtgtattgaaggagagagtggttgagttccaggaaggataatggatagatgggtggctgaacagatgcatgcatccttgtatgcatgggtagatggggtgtgtgagtgggtgggtgagtgaatagatggatggaTAAGTTGAAGAGGACAGATGAACAAAAGCATAGTCGAATAGATGTGTGTAAAGAAGGGGAGAGTCATTAAGCAGGgggaggatggacaggtgagtggatataagccttcatgcatgagtagatgggtaagtttgtgatgcataggtgggtaaatggttgcgggagtgggtggtggatgtgtgcgtaggtggactggtgaatgagtggatggatggggtggatgagGAGAGAGATAGGTTCAAGGGAT----GGATAGATGGAGAGATGAAGACTGAAGGATAGAATAAGTGGCTGTGGACAGTCCTGCCACATAAGTGGACATCTAGTTATTCTGCAGAGATCAGCAGTCCTGAAGATAGGAAATGCAAATCAAAATTCACAAGAAAAAAAATGAAGGCTTAGGAAATAGGAACATTGCATACTGGGGCCAGAAGAGGAGTGGGCACAAAATAAGGGACCAGAAGTCACTCCTTTCTCTGATTTTTGTGGTAACCTCAAAGACTTTCTTCATCTGGGATACAGGCACCAACAATTATCACCCCACAGGTGTCCAACACTGGACTAGTTCTTCAGGGGAGAGGCCGGGTGACTCACATCTTGCAGTCAACAATGAGGGTGACAGACTGGCCCTTCATGGCCATAGCCACAAGGTGCCACCTGGTCATGGAGT--------GAGAGGTTCAAGTGACTGACTGAAGCAGGGGCG---TCAACAGGGTTGGAGA----TCTGTTGATG--AAAGTTGAAACCAATGACGATGAGAGCAGTAATCacaatagctgccatttatcaagtgcttacagtgcaacaaacactgtgccatcactttctcacttgtttgtgccaattctatttactgtccatccta-agatgtagaaactgaggctcaaaaaatttaagtaacttgcccaaggtacaggctaacacaacttgcagagaaggatgcactct-aagcccaaactctggGCTAGAAGTGACTGAACTTTGGGCAGTGCGTAGGTGTGTTGTGGCCAAAAGAAGGAACAGGGTTTCACAGTTTAGAGCGTACAGGTTCTAGGGCACTT-----------TCTCACAAAAGTGTGGGCCAGGCAGACCAGAGGAGCAAATAGACTTACTTGCCAACTACTAGGGTGAGGCCTCAGAAGACGGGCTAAGC---AGGTTGAAGTCGTCCAGTCTGATCCTCATACAGGAAGCTGACAAGTTGGCCTGGCTCCAGGCTCAACTGTTGGACA-CCTGGGCACTGCAGAGAATCAGGAGGGGAGCTTGGAGACCAGGACGGGTCCAGAAAACAGTCAGGAGAAAGAAATCTTTAGGAAATCCTCCTGGTACCCGAGAGAAATACACACAG----AGTGAGAGGCAAAGAGAGCCAC-CACCCCTTTCCTCCTGGTGTCTGATTCCAGACCCCACCCCATTACCTCCC----------------TCACCGTGTCA-CTACACTTAGGAAGAGGTAGAGGGTGGGTGTGCTGAGTTGGGCAGTTTATGACACTCAGTAGA----------TAGACAGATACCCCTTGCCCTCCAGACACCATCAGGGAAGTAGGGGAAACTCAGGCCCAGGAGCAAATCCACAGGGGGTGCACCTGGGAGAGTCCATGAGGGTCAGGGGAAGGGACACGCCCTCAGGAGGG--AATAAATGGGGGACTTTG s canFam2.chr12 5654579 1809 + 75515492 atgaatgagagggttggtgggtagataaatgg-aggtatggagtagagagaa-cagattgataggtaggtagatgggtggaAGTGAATATGtgaatgaatgaatgaatgaatg-------aatgaatgaatagatgGG------------------GAGTGCGtgggtga-----------------------atgaggggacggatgaatacatgcatcctcatatgcatgggtagatgggctaggtgggtggatgaatgattgaataaatggatgg----gttaaaggtga---------------atagactgacggatgagtg-----aagaagaaagtggctgggcagaggaaa-atgggcaaatgggtggatacaaacttgaatgcttgattgg-tgggtaagt-------gcataaatgggt------------gggtgggttttagatgagtacat------------gaatgggtgggtg-------tagat----agagagattagttgaagggataaatggataggtggactgatgaaGACAG------------------------CTGTCCTGCCATAGAAGTGGGTGCCTAATTCTCCTACAGAGAAAGTTAGCCTTGAGGATAGAAAATGGAAATATAAATTCATGAGAGCTCAAATGAAGGGCCAGAGTATAAGAAGATGGAGAGCTGGGGCCAGAAGGGGAATAGACACAATATATGGGATAAGAAATCACTCTGTTCTCTG----TTCTGGTTACCTCAAACACTT-CTTCATCCAGGATACGGGCACCAAAGATAATCACTCCATGGGTGTCCAACAATGGACGAGCACTTCGGGGGAGAGGCCGGGTGACTCGCTTCTTGCAGTCAACTATGAGAGTGACAGACTGGCCCTTCACAGCCACAGCCACACGGTGCCACCTGGTCATGGGGCGGGGGGGGGAGTGGTTCAAGTGACTGA-------GGGGGTGGGCTCAACAGGGCCAGAGAACAGTTAGTTGATGGAGAGGTTGGAGCCAAGGATAACGATAATAGGaatcacagtagctactatttattgaatgtttacaatgcaccaggca-------atacttttctcatttgattctcgtgatcctaccatc--cctattttatagccatagaaactgaggcttaaaaaagt----taacttgcccaaggcacaggctagtaccacatgcaagga--tctaaactctgaagtccaaaccctaaaCCAACAATGTCTGAACTTTGGGCAGTAGGTAGATGAGGTGTGGCCAAAAGGGTTGGCAGGGTTTCCTAGTGTAGGGACTGGGGGTTCTGGGGCAGTGGCCAGAGGGGAGCTCCCGAAGGGGCAGTGCAGGCAGACCAGAGGAGCAAACTGACTTACTTGCCATCTGCTAGGCTGAGGCCTCGGAAGACTGGCTGAGCTGGGGGTTGAGGCCGTCCAGTCTGGTCCTCATACAGGAAGCGGAAGGGTCGGCCAAGCTCCAGGCCCAGCTGTTGAACACCCTGGGCACTGTAGAGTGTCAGGAGGGGAGCCTGAAGGCCAGGACGGGTCCGGACAGCAGTCAGCAATGAGAAATCTTTGGGAAAACCTCCTGGTACCCGAAAGAAACACAACCAGGTGCAATGAGA-GTAAAAAGAGCCATAAAACCCTCCCCTCCTGGTGTCTGATTCTAGACCCCACCCTGTGACCTTGCCCCAGCTCTCTCTATTCCACCATGTCACCCATACCTGGAAAGAGCTGGCGGGTGGGTGCACTGAGCTGGGCAGGTCGGGACACTCGGTAGGCCACATCAGCCGGACAGATGCCTCTGGCCCTCCGGACGCCATCAGGAAGGGAGGGAAACCTCAGGGCCCTGAGCACATCCACAGGGGGTACACCTGGGAAAGTCCATGAGAGTCAGGAAAAGGGACACATCCTCAGGAGGGCCAAGACATGGGGACATTTG a score=1178 s hg19.chr6_ssto_hap7 4560341 75 + 4928567 TAGCATTTCTTCCACACCAGGCCATGTCCTGTGGGTGTGTGAGGTGTGGCA---------GAATTGGGGAAATGATAATCCCTG s canFam2.chr12 5599751 76 + 75515492 TAGAACTTGCTCTGTCCCAGAACATGTCC-----ATGCAAGGGGGGTGGCGTTCTCCATGGAA---AGGGAATGACATTCCTTA a score=4777 s hg19.chr6_ssto_hap7 4560445 251 + 4928567 CCTTCAGAGCAAAGAAAACACATCATCTCCCCAAAACTCATGACTC---TGACTGGTTAAAATGAGTGTCAGTGTTCTCCATCTGTCCTCGTAACAGCATCACTGGCTCTATATTGTCAGATCTTTAATACTAACTTTCTGCCCAGTGAGCAATGACTCATACAAAGCTCAGTGCCCATTGGTTCTTTTCTCAGAGTCTGTCCAATCCTAG-GGTCACAGAAGACTGCTTGGGTTCATGGTCTCTAATATTTCAG s canFam2.chr12 5600040 232 + 75515492 CCTACGGAGGAAAATATATAAACAATC-----AAGACTTTTGGCTCACCCAGTTGCTCAAAATGAGGATCCCTTTCATCATACTGTTTTCGGTGAATCTTAAC--ACCTTAAAGAATCATGTGCTTTATACCAAATTTCTGTCTGGTGA----CAATTCCTACTAA------------TTGGTTCCTTTCTCAGAATGTGGCCACACCCAGAGGATATGGGAGGCTGTCCAGGCTCATTGTCTCtaatattttaa a score=6721 s hg19.chr6_ssto_hap7 4560751 220 + 4928567 GCCAACCTTTTCCAA-CTCCATGAT---GATCCTGCAGGTTTCAGGGGGCCCCTGGACAGTGGCTCTGACAGCATTACTGATGGTGCTGCTCATATCTGTGGTCCAGAGCAGGGCCACTCCAGGTAAGAGCAGAGCTGCTATTCCTGGAGGGTCTGGCTCAGGGAACAATTCCTAGGGGACTTTCTCTTTATGGAACCAGAC--TCTGAGACAGCATGTGGGGCTC s canFam2.chr12 5600335 226 + 75515492 GAGAGCCTTTCCCAGGCTCCAAGATAGTGGTCCTGAGGATCACTGGGGTCCCAGGAATGGCAGCTCTCATGATGTCCTTAGTGATGCTGAGCTCCCCTTTGATTCAGAGCAGAGACATGCCAGGTAAGTGCAGAGCTGCTGCGCTTAGAGGATCCAGTTCAGGGTAATGAGCTTAGGGAGCTTTCCATGTGGGAAAAGAGAAAGTCTGAGAAAGACTTTGGGGCCC a score=12158 s hg19.chr6_ssto_hap7 4565210 282 + 4928567 CTCTTCACAGAGAATTCCGTCTACCAGGAACGGCAGGAATGCTATGCGTTCAATGGGACTCAGCGCGT------TGTGGACGGGCTCATCTACAACCGGGAGGAATACGTGCATTTTGACAGCGCAGTGGGGGAGTTCCTAGCAGTGATGGAGCTGGGGCGGCCCATAGGCGAGTACTTCAATAGCCAGAAGGACTTTATGGAACGGAAGCGAGCCGAGGTGGACAAGGTGTGCAGACACAAGTACGAGCTGATGGAGCCACTCATCCGGCAGCGCCGAGGTGAGGGC s canFam2.chr12 70262942 288 - 75515492 CTCCCCGCAGAGGATTTCGTGTACCAGTGTAAGGCCGAGTGCTATTTCACCAACGGGACGGAGCGGGTGCGGTTTCTGGCTAAATACATCTATAACCGGGAGGAGTTCGTGCGCTTCGACAGCGACGTGGGGGAGTTCCGGGCGGTCACGGAGCTCGGGCGGCCCTCGGCTGAGTACTGGAACGGGCAGAAGGAGATCTTGGAGCAGGAGCGGGCAACGGTGGACACGGTGTGCAGACACAACTACGGGGTGGAAGAGCTCTACACGTTGCAGCGGCGAGGTGAGCGC a score=2055 s hg19.chr6_ssto_hap7 4574994 87 + 4928567 CAGGCGAGGCCAAAAAATCcataggttact-tgcagaataagtcatg-----------------tcaagctcactttattttcttgatatatttatgaaatatag s canFam2.chr12 5609128 105 + 75515492 CAGAGGAAGCCAGGAAACACTTAGGTTAAAATGAAGAACAAATCAAGCTATTTCATTTCTTCTCTCTCTCTCTCttttttttaaagatttatttataaaaaataa a score=2159 s hg19.chr6_ssto_hap7 4575086 239 + 4928567 ggattaatagaccatgagaa---tgtcgtttatatatatattaatttcaagaaatcatttgagcaaatttttcatcttttgcatcaggatagagcactcaaaagataaggtag-tgtcgctgctgattaaatattctttgtccaaaggctgttaatcagtggCTGATAGATAAGATTTCTTTTAAATG-TGCTACAAACTGGTAAGTTTGTGTGCCTCCTATTCTTCTCAATACTATTTCTATA s canFam2.chr12 5609440 232 + 75515492 agactgctagatcaaaggaaatctataggctgaatatattcggatttcaagatagtatctctcaggattacacatccttttgacccagat-gagaacatgtaaattcagggagctcccatagctggttcaagatt-tctgctcaaagaattttagttactgtc-----acttacatttctggcaaaaaatgttacagagcacagactctggccctcttctgttcTT-----TGCTCTTTCTTTA a score=7410 s hg19.chr6_ssto_hap7 4575672 197 + 4928567 AACATCT-AGAAATCAATTCCATAATGAGCATGTCTAA-------GAAATAATAATCTCAAATGCTATTCCACTTTTCCACTTCCCCACTCCTAGTCCAGCCTAGGGTGAACATCTCCCC-TCCAAGAAGGAGCCCCAGCAGCACCACGACCTGCTTGTCTACCACGTGACAGATTTCTACCCAGACAGCATTCAAGTCCGATGCT s canFam2.chr12 5609785 202 + 75515492 AACATCTGAGAAGTCAATGTGACAA-GAAAACAGCTAAATGCACTGCTCTGGCCATCTCAGCTGTCATAACAAGATTCTCTTTCCC---TCCTAGTCCAGCCTAAAGTGAACGTCTCCCCCTCCAAGAAGGGACGCCTGCAGCATCACAACCTGCTTGCAGGCCACGTGTCAGATTTCTCTACAGGCCACATTCAAGTCCGCTGGt a score=2452 s hg19.chr6_ssto_hap7 4575869 27 + 4928567 TCCTGAATGGACAGGAGGAAACAGCTG s canFam2.chr12 5610183 27 + 75515492 TCTTGAATGGACAGGAGGAAACAGCTG a score=28613 s hg19.chr6_ssto_hap7 4575896 1421 + 4928567 GGGTCGTGTCCACCAACCTGATCCGTAATGGAGACTGGACCTTCCAGATCCTGGAGATGCTGGAAATGACCCCCCAGCAGGGAAACATCTACACCTGCCAAGTGGAGCACCCCAGCCTGGACAGTCCTGTCACTGTGGAGTGGAGTGAGGG----TCTGATGACCCTCTAGACTCCACCTCTGAAGAGCAGGGGACTCTCTGGCTCTGGGGTCCACTCATCTGGTTTTATGTGTCTATACCCTGGGACCA-TGTCCGACCCCATTTTTCTTCT-ATACAAGACCCTGAGTGTAGTTTTAACCTGGGGACAATGGAGACTTG-----CCTGCC----------CCCGGCCTAGAAGGTCCTAAGGATTCATAGTTCCTCTCCTTGTC---CAAGAATCTAGGGATGCAGACACCTTCCTGAACTGACCTTACACATGGGAACTGTTGTCTTCCTTCAGCCTTTTAGCTTATTCTAAGTTATTTTGAGAGGC--AACTAATTGAATCTGAATTTGTCTGTTGTTGAGGTCA-CACCCTCTGTTCCAGAATTGAGATAGTGACTGTT-TCTCAATTTCCTGTCATGCAAGGTGTATTCC-------CCTCGCTCTCCTCATGCCAATATTCTGCATCAGGCTGCAGGATCTCAGACAGGACATGAGCAGGGGTGCAGCTGCTGGAGTTGACTCTGAACCTGAGCCTGTTCTTCCTAGAGGCACAGTCTGATTCTGTGCAGAGCAAGATGCTGACAGGAGCCAGGGGCTTCATGCTGGGGCTCATCATCTGTGGAGTGGGCATCTTCACGCACAGAAGGAGCAAGAAAGGGGAGAAA-TCCTGTGAGGTGACCAATACCCACCTTTCTCCTGACTTGCTCACCCTTCTTCCATGATGAGGGGCTGAGACAAAAAAGCAATGCCAGAGA---------GCTTGCTGAAATCACATAGTCAGGAAACAAAGACAGCTTCTAAGGAGAGAGGAATCCCAGCCTGGCATCTTAATGCAGCCAGATGCATGAGGTCCC---AGTTACTCAGGCTCCTGCAGAGCGTCCATT-------------------------GAGTGATGGGCAATGGAAGTATGATGGAAACGTTTCTCTAATTGTCTGAGGTGGT-----------TTCAGTAGCTGAATACATTCTCTTTCTTCCTTTCATTTCAGTTCAACAAGGATCTGCATAAACAGGCAATATTCCTGCTTTGAT-TTCCTTGTTGGGGGA-----------GTTACA-----------GGAGGAC---ATAAGTCCTTTCTGTACATTGTGA--CACTGAGGCTCCTCTAGGAA----AAGAGTCTCAGGC-CTGAACCCCTGTTTCAA---------------CCTCAGCCCTGG------------------GGTGAGTGGGG--AAAGAGCATTGCATGGCTCCATTGCTAAAGGAAGC-TCAGA---TCAACTCTATTCTTTATCAGCCTGAGATTCAGCCTCTCACCGTTATTTTTCTCTCCTGGGACT----------TAAAGGAAGGGGGCCAGCAACC--TGGGATTACTGTTTTTTA s canFam2.chr12 5610406 1506 + 75515492 GGGTTTTATCCACCAATTTGATCCATAATGGAGACTGGACCTTCCAGATCCTGGTGATGTTGGAAATGACCCTTCAGCAGGGAGACATCTACACCTGCCAAGTAGAGCACCCCAGCCTGGACGGTCCTGTCACTGTGGAATGGAGTGAGTTACTCCCTGCTGGCCCTCCAGACTCCA------------------------GGCTCTGAGGTCTGCTCATTTTGTCTTGTGTCACTACACTATACTACAACTACACTACCCCATGTTGTTCCTCATCCA----CCCAACGGTGGTCTTGG-CTGGGAACAGTGAAGGTCTGGCAATTCTCCCGTACGTTTATCCTGCTCTGGGGGAGTCTAAAGAAT--------CTCTCCTTGTCAAATAACAACTCAGAAAGGCAGTCACCTTCATGACTGGCCCTCAGACATGACAAC--ACCTCTCCCTTCGGTCTCTTAAGTT--------TGGACTTAATAGGCTGATCTAA---AACTCGCATTTGCCTCCTGTAGAAGTCATCACTCTGAGGCCCAGAACTT-TAGAGTGCCTTCTGCCTCTACCCCTTTTC---CATAGTGCCTCCAAGCTTGGCCTTTCTTTTCTCTCCGTGGTAGATTAGATCAGGCTCCAGG-TGTCAAACAGGGCCT---TGAGGTTGTGGCAGGTGGAGGTGAGACTCACCCTGA-CTTCTGTTCCCCAGGGGTACA-TCAGATTCTGCCTGGAGCAAGATGCTGGCTGGAGTTGGAGGCTTTGTGCTAGGGCTCATTGCCCTCTTGGTGAGCTTCATTCTCCATTTTAGAAGCCAGTGAGGTAAGAAACTTCTGGAAAGGGGTTGATA-----CTGTCTTTCCACTGTCTCACTACTCTTCAGTGATGA--AGTTGTGACAAAAAGGCAAAACAAGAGACTGAAAGAGGCCT-CTGAAATCAGATGCTGATAAGCCAAAGGCAGCCCTGGAGGAAAGAAGATGCCTAGCCAAG--GTCTGATCCAATAAGATACCGGAGGCTGCCAAAGTTACCCTA--TCCTACAGGGTGTTCTTTTCAGCCTGGGGTAGACTCACACCTAAAGTG--TGACATGGGGACTGTGGTGGAAATTTTTGGATAATTTTCTAAGATGCTGTTGCTCCTTACTCTCTAGATGACCAAATTCATCTTC---------CCTCAGGATGACAGGGACCTCAACCAACAGATGGTATTTCTGCTCCCTTCTTCCTTCTTGGGATATAATTCATGTCATTGCAACATAAGACTGGGAGCATTCAATGAGTATGCTATGTTCAGGATAGATCATAGAAAGTGCCCTGAGAATGAGGAGAAACTCAAACACTCCACCTTTCTTGCAAGTTGAGCCAAATTGCCCCCAACTCTTGATGCCATTTTCCTCTTTAGGTGGATGTGGCCACAGAGCATGACTTTGCTCCATTGCTGAAGGAAACTTCAGAAACTCTCTTCCATTGCTCAGTAGGCCAACATTCAGCCTACCTCTGTAATTTTTTTCTCTCTTTTCTCTTTTTTCTCTAGAGGGAAAGAAAATGTAGCCTTTGAGCTTCAGATGTTTTA a score=5847 s hg19.chr6_ssto_hap7 4577317 670 + 4928567 CCTCCACAGGGTTGCTGACCTTGCCTAAAAGACTA-ATGTA-CCTTGGAACAAGCA--TTTTCTATTTCTTTAGTCCCAGTATCTGCTTCGAGGACAGACCCCCAGCCTCCCAAGAGGATGCTGCTGCTGAGTAGT-TGCACTGAAGCCAGTTTCTATCATTCTGTTCCTGGATTCAATGCATGATTTCTCTCATGGGGCCT-CCAACC----AAGTTCCTTTCTCCTTAGTGCCATGAGTAATCAAAACCCAACATGATTGTTTTCTGTT-------------AAGAATATACACCAAGTCACGTCTCATCACTTTTTTTTCTTGAGGGTTTTAGCAAACAGTAAGAGTTAATAAAGAAGTTCATTGTGGTTTAGACATAAGAAAGAAGAA--AACC------ATGAA---------AATCCATCCAAACTATTGTATAAGGTGGCCTGTTGGACATAGACCTCTCCTGGATTTACTGTATTTCAGTG-AGCTGCCCCATCATCATGTT--TGGTGTCTTCAT-CCATTTAGGTCTGAAACCACTATTCTTAGCTATTCAGTGGTGAACAGACTGCAAATCTGTGTTATAGGGCCCATATTAACATAGCACTGATTCAACATATAACTTACTAAGAGCATGTTTTAGCATTACTGTTAAGAAATTAAATAAGCATCAGAATTTAAAACGATAAAT-------ATAATCTAACACACTTTC s canFam2.chr12 5612197 659 + 75515492 TCTTCGTAGGGTTCCTGAACTGATCTCAAACATCACATGTAGCCTTGAAACAAGCAGTTCTGCTATTCCTGTTATCC--------------AGTAAAGTCCC---ACCTCCAGAAAGGAGATTATGGCTAAATTGTGCCCCCTGATATCAGTTTCCGAGTCGCAGCATTTTCATTCAAT---TTACTTCTTTCTCAAGTTCTCCCAATCTATAGAGTGACCTTC-CCTGAGGAACATAAACTATCTAAATCCAATATTATTCTCTTTTTTTTTTTTTTGAGAGGAGGGAGATAAATATGGTCATG--TGACCATGTTTATGGTTGAAGGGTTC------------------------GATGATCATTGTTGTTTC-ACGCAGGCATGGAGAAATAACCTTCTTGATGGGTTATTGATTGACCCATTCTCCTTATTGAAT-AGAAGGCCAACTGATAATGAATCTC-CTAAAATTTGCTCTACTTCATTGTAGATG-------ATTAAATTCATGCTGCATTCTTACTAGCGAGGGGTGGAACCATTACTCCTAGAAATCCCAGATGGAACAGACACTGAGCCTGGATTTTGCCATTGACATTTATATAGGACTAATAAAGCATGTCAATCATTAATAATATGCTTTCCAAGTG----TAAAAGTCAACATAAG-ATCAGAATTGTAAATAATAGGTTTATTAGATCACCCAAAACACTTTC a score=1969 s hg19.chr6_ssto_hap7 4577987 58 + 4928567 AACACTTTCTTTGCATGCCATCACAAATACTCCTTAACCAAATGTTGCTTGGCCTTTT s canFam2.chr12 5597494 53 + 75515492 ACCCTTTTCTTTG-ATACCAT----GATAGTCTTTGACCAAACAAGGCTTAGCCTTTt a score=11506 s hg19.chr6_ssto_hap7 4578098 368 + 4928567 CTAGACCTCCTGAGCTAATAATTCATACAGTGAGAAACGCCTCCCCATTGTTGAAAGTGCAAAGCAATAGGTGTGG--CACTCTTTCAAACACTGATCTTTTTTTTACAATCCAAAATTTTTATGTGTTTTGCATTTCATATTAAGTTA--CTGTAAATCAAGGTAGAAGACATGTTTGGTCTAAGCTTTCCTTTTCGTGTAGAGGATGGATTCTTAACTCCTGATACACATAATGAGCACTCAGTGGCTCTCTGATACATCCAGTTGTTGGCTTCCTTCTCCCTGACTTCTCACAAGCAGCTTCTGGGCCTTGTGTGCCCCTGGGCGCCTATCCCTGGTCAGTTTACCAGAGCTACCCGTGTTCCTCTCAC s canFam2.chr12 5597774 337 + 75515492 CCAGGCTTCCTGTCGTAGTAATTCACATAGTGTTAA-----------------AATGCTCAAAGAAATAGATGCAGTTCTCTTTTTTAAACATACGTC-TGCTTTTACAATCCAAAATGATTACAGGTTTTCTGTTTTACGTGAAATTATCCTGAAAGCCGAGCTAGA-----------TTCTAAGTAGTTCTTTTTGCATAAAGCATGGAGTATGACCTCCTGAGGCACATACTGGGGACTCAGAAGATCTCTGACATACCCAGGTGATGCCTCCTCTCTCCCTGCCTCCTCACAAGCAGCTCTTGCCTCTTGTTTGCCCCTGGGCCCCCCTGCTCCATCAGTTC-CCACTGCT-----TGCTCCTCTCAC a score=21506 s hg19.chr6_ssto_hap7 4578489 638 + 4928567 CCATTTTTGTCCCCTGGACGC-ATGCTGTAGGTGTCAGCCGTACCC-----------------AGAGTGGAGTGAACAATCTGCAGACTAACTCTTGCAGGATGCAAAACTGAGGTATCTGCACCCATAATGCACCTGTATCCTACAATTACAAGTCCAGGATATGCATTCCTAGGAAACTGAGAATATAA----------GGAGTCACAGA-AAGGCATCAGATGTGCCTAGCTCTGACATACACAGGTATTTATTGAACTCTGGGATTTCTCAGGAAAAATGCAGTGCAGAGAAAGGTTCCTGATGAGACCACAGCATACAGACCATCCAGTGTGGGCACCACCTTGTCACTACACTTTAAATTCTTCATATTGATTGAGGGCTATCTAAATGTCAGACCCTTTGCTGAGTGCTAGGTGC-AGGAGGATCATAGGCAGCCAGGAGGTAGAGGGGTCTTGGGGTACATAAGTCATTGTGGTTGAAGAG--CAGAGATTCAAAAGAAAGTTAGGCCTGGAGATTTAAAGGAGA-CCGAAGCTGGTGACTTCCTTATGTCAACTTCTGGCTGAGAAAGTTTGACACCTGGAGTAGAATAAACACAGTGGGGTTAGGACTGCCAGCTTAGTGTTTTGTCCCCCATCCCTTTCCATCCCTGGTCCCTTCATTTT s canFam2.chr12 5601635 628 + 75515492 CCATCTTTATGCCTTATACCCCATGCTATAGGTTAGGGAAGTACCCTAACTTGGGGTACTTGGGGAGCAGAGCAAACATTATCCAGAC-----CTGGCAGGCTCAGATACTGCAGTAACTATATCCACA-------------------TTACAGGTCCAGGATATGTGCTCCTAGGGAATTGAAGATAGAGAAAAGGCCCTGGAGTCACAAAGAAGGCACCAGAGATGTCTAGC------ACACAC-GGTATTTATTGGTCCTTGGGATTACTCAGAAAGGATACTCTGTAGAGAGGAGTCACAGAAGAAACCAGGGCCTATAGACCATCCAGTGTGGGGGCCAAATTGTCACCATACATCAAATT-TCaacatttattaagtacttcctatgtatcaggccctttgcag-gtgctaagtactagtaggatcacagacagGAAGGAATTGGAGAGGTCTTTGGAGACATCAATCATTGGTGTTGAGGAGCACAGAGATTCAAAGGCA--------CTGGACCTTTAAAATAGATCTGATGCTGGGGATTCCCCTATGTCCTCTTCTGTCACATATGGGTTGTCACCTGCAGTAGAATAAACACAGTGGGGTTGGGACTCTTGGGTTAGCATTACATGCTCTAGCCCTTTACA--CCTGCCTCTTTTTTCTt a score=5137 s hg19.chr6_ssto_hap7 4579146 183 + 4928567 TAAACTCTCACAGATGCCAGACCATCTCCTTCTTGTCCAGGTGCACAAATAACTGCTCATCTTCATCAGATTCAAACATATACTCCCCAGAGGGTCTGTGTGTCTGCACAAAC---TCTGCATACGTTGAC-ACATGGTCTGCTGCTTGAAGGGGAAGAAGACTGCAGAATGAGGAACACATAGGAA s canFam2.chr12 70286858 184 - 75515492 TAAACACAGGCAGCCGCCAGACAGTTTCCTTCTTCTCCAGGTCCACGTAGAACTCCTCATCGCCATCAAATTCATGGGTGTACTGGCCAGAGGGACCGTAAGACTG-GTAGACATTTATGCCGTAGTAGGCAACATGGTCAGCTGAGCAGCAGGGGTGAGGA--GCAGGAAGCAGAAAACAGAGGGA a score=71908 s hg19.chr6_ssto_hap7 4610256 1595 + 4928567 TGATGGGGAGGGATAAGGTGACCAGAGGTACAGATGCAGTAAA---TGTCTTGGAAGTGGGCCTCAGCCTCCCCATTTACAGAGATTAGACTGGGCTATGTAGCACCGTCC--------------------------------------------------------------------------------CACCCACACCCAGAAGCAATCGCACACCGGTGTCAGAAACTGGAGCCATAGGGACCCCAAACCCCTACCTGGTGTCCCTGGGGCATTGTTTGTAATTTTATGCTAGTCACCCAGGCTTTGTAAACTCT----GGGCCCTGACACCCCAGCTGGACAGGGCTTGCAGGGTATCTGGATTAAGCCATACAATTCTGGTAACCACTTAGCTGG-GAAGAGGAAGCATCAGATGGGTGTCGGGG--GAGACTGAAATAACAACACAAGCAGTG---ACACAGACACCTGGGAGGAGACAATCACATTATTTAACCatcagtcagcatggaagctgggc----------acagggtcctgggagtcccttccat----atgccacacattaaccctttaattgcaggatcagggaaagtgag-gggtgcccaggggagggacaggggtggc---------aatgaacatactcagtggctcagggccatggcaatttaccagccaatatagaagaattttaatattCCAGCCATCTGCGGGATGCAGCCCTGCACACACCCCACACTATTCCGTTTCTTC----CCTGGGGGA-----------------GCATCCTGGCCCTCAAGTAGCAGGCAGTGCCTGCCAAACCCAGACCAAGTGGAAGAGACAGTGGGCACATGGGCCAGGCAGCCAA-CACC----TGTGGGTTAGAGAGCCCC-ACCCTGGCAGAGTCAGAGCCCTGAGGCCAGGGAGACCACATATTCCAACTTTCACAGTGGGTGCGACAGGTGAGGTGGGAGGAAGGTGGGAGGGAGGTGGGGTTCAGCCCTGAAACCCCCCTACACACAGTCACTGAGGAAAGTCCTGACTCCAGGATGTGGGTGCCGGAGCCCACCCCCGAGACCCCTGTCTTCAACATCTGCTGATTTTTGTTGGCGTTTCTCTTTTT-----TGTTATTTTGCTTTCCACACTTTAAATAATTAATACAATTACTTTTAAATACAAAATACGCCATGTCCTTTCTCTTCTCTTCCATTTGTTT-GGGGTGATTGGGAGGTGAGTTTTAAATAAGGGTCTCAGCTCTCTAACGGGTAACAGGCTCCAGGTGGGAGGGCCAAGAGCCCCAGATGCCACTCCTCCCGTGGGGTGTCCAGGCAACCACTTCACCCCTCCCCTGGCCTGCCCC-GACTGAGGGCTCTCCACGCCCTGGCCCAGGGCTCCCTAGATAGTGAGGAGCCCTCTTGGGAGGTGGCACAGAGCTGATGTTGTGGGATTCCAGGTGGGCCTGGTTCCGAATGGACAGGATCAGACAGAGACGGTCCTATCCCATGAAGCAGACAGGCCCCAGCAGCACCCCTCCCCGCCTCGGTGGGGCTCCCAGGTCTGAGAAGGAGGCATCCAGCACTGGCAGCTGCTCCAGCACAGGCGTTCGCACCTCCAGCACCGTCCGGCCTTGCTGTGTCTTCAGGGGGAGAC--AAGGAAGAAAGT-GTGAGCAGGATGGAGGCACCC------CCCAC----CCTCTAACCTCAGGCCCAGGCTCACCTCTCCTCTGAG s canFam2.chr12 5629770 1686 + 75515492 TGAAGGGGAAGGAGGAGGTGACCAGAGGCACAGGGGCAGGAAACGTTGTCCTGGACATGAGCCTCAGTCCTCTCATTTGCAGAGTTTAGACCAGACCAGGGAAGGCCCCCCTTTCAACCCTGAGGTCCCTAAAGATGGCCAGTGGGGGTGCTGGGATGTCGTGTTTGACCCAGACACGAGGAAGACGGGCACACCCTCACCCAGAAACAGCCCAGCACCTGCATCACACA------------GAAGCCTGGGCTCCTGCCTGATGG------------GCTCGTGAGTCTGGACTTGTCAGCCAGGTTTTATGAATTCTTTCTGGGCCCCAGCACCACAAAAGGACAGGCCCT-CTGGGCAAAAGGTTTAAGCCTTCCATTTCTGGAAAAGGCTCAGCTGGCAAAGAGGGGGTACTGGGCAGG-GTTGGGGTTAGGGTTGAAATAACAACACAAGCACCACACACACATGTGCCCTAGAGGAGACGATCACATTATTTAGCCATCAGTCAGAAAGGAAACTGGTCGGAGGGCTGGACAAGGTCCCGGGAGTCCCTTCCATCCAGATGCCACACATTAACCCTTCCATTATGGGATCAGGGAAGGGGAGAGGGTGCTCAGGGGTGGGACCAGAGTGGCCAGGGTGGTAGTGGAT-TGCTCGGGGGCTCAGAGCCATGGTGACTGGCTGGCTGATAAGGACGAGTTTTGGTATTTTGACAGT--GCTGAAAGCAGCCCTGCTCTCACCCCTCACCCTTCCACTCCCCCTGCCCCGGGGGGAAGGGGTGGGAAGTGGTGGAGGCCTGCTCACCAGGTAACAGTCAGTTCCTGCAAGTCCCAGACCAAGTG--AGACACAGCCTGTGTGTGGGTCGGGGAGCCAAACACCCTGGTGGAGCCGAGAAAGCCCCTGGGCAGAGAGAGTCAGA-CCCTGAGGCAAAGGAGACCATATATTCCAACATTCACAGTGGGTGCTACAGGCAGGCTG-------------AGGGAGGGGGGGTT-GGCCTGGAAACGGCTC--CCCATAGTCGCTGAGGAA-GCCCTGAGGCAAGGAGTAGGGTG------------------AGCCCTGTCTCCAAAGTCTGCTGGTTCCTGTTGGCATTTCTCTCTTTATCTTTTTTGTTTTGTTTTCCGCTCtttaaataattaat-taattacttttaaataCAAAATACACAGTGTCCTTTCTCTTCTCTTCTGCTTGTTTAGGGGCGATCGGGAGGTGAGTTTTAAATAAGGGTCCCGGCTGCCTAACAGGTCACAGGCTCCGGGTGGGAGGGCCAAGAGCCCCAGGTGCCACCCCTCCCCTGGGGTGCCC-GGCA--CGCTTCACCC-TCCCTTGGTGTGCCCCAGACTGGGGGCTCTCGGTGCCCTGGCCCAAAGCCCTCTAGATGGTGAGGAGCCCTCTTGGGAGGTGGCACAGAGCTGATGCTGTGAGATTCCTGGTGGGCCTGCTTTCGG-CGGACAGAGTCAGGCAGAGAAGGTCCTAGCCCATGAAGCACACAGGCCCCAACAGCACCCCTCCCCGCCTTGGGGGGGCCCCCAGGTCTGAGAAGGAGGCGTCCAGCACCGGTAGCTGCTCCAGCACAGGAGTCCGCACCTCCAGCACCGTCCGGCCTTGCTGTGTCTTGAGAGGAAGATGGAAGAGAGGGAGCAGTGAGCTTGGTGGAGGCACACACAGAGCCCACAGATCCCCCAGCCTCAGGCCCAGGTTCCCCTCTCCTCTGAG a score=642 s hg19.chr6_ssto_hap7 4611851 8 + 4928567 CACCTTGG s canFam2.chr12 5631640 8 + 75515492 CATCTTGG a score=642279 s hg19.chr6_ssto_hap7 4611859 13994 + 4928567 CCCCATCAGGGTGACTCAGGA------TGTACAGACTGGCAGTGTCTGTGTGCCCATGCGT-------GTGTGTTTGCT--TCTCCCCCACCGTGTGCCTCTGCTGGGCAGCCATGTGCCAGTCTGTGTACACGTCTGCAT----TAACCTGTGTGACGCTGGTGTTTGTACCCAAG-TGAACCTCACCCGATGGCTTCCATCCTTTCCACCTTCCTCACCGGCTTTTGAGCTCCCTCAGGCATCCCTGACAATCCAGCAGGACGGACTCCTCCCTGCTCCCCCTGGGTGCCCTGCCCAAGGGGTCTTCCCACCTCCTTCCTCCAGCCTGAGTCTGAGATCAGCCCCCAACCCAGCTCTTCCTGT-TCCCACCTGGCAGCCATCTCTGAATTCTTTGACATAGGGGCTAGTCTCCGGGCTCAGCTCATCCTCATTGGCCCCACGGAGTCTCAGGGGACCGTCACGGGCTGCTCCAGAGCAGGGGTAGGAGACGTCCTGGTGGGCTGAGACGCTGAGCAGCCGCAGGAAGGTGAGCTGGACCACACCCACTGGGGAGCCCTCTGAGTCCACGTAAGAGAACTGGAAGGAGAGAGAGGGCTGGCCTCAGAGGGGGAGAGAGAGGGCTGGCCTCAGAGGGAGACAGAGACGGGCCTCAGGAGCATCTACAGCACCAGGACAGCTGAGCCAGAGTCATGAGCAGGGAATGGCTGGAAGGCAAGGGCTGGGAAAGAAGTGAGGGGCTGAGTGGGAGCCAGGAG------ACTGGGGGTACACGAAAGGCAAAGT-----------------------------GAGCATCAGAGGACCGGTGAAAAGGAAAAGAAGAAAGAGCTAAGAAGTGGAGAAGGGGTGGCAGGCTCCGGGGGGGGCAACAGCCAGGGGAC-TGTCACCAAAACCCAGAAACCACTAAGCCCTGAGGGGGTGCACTATGGGGCAGGGGAGGGGCAGCGAGGGGCCAGCTCTCACCTGCGTGACGTCATCCCTAGGCGTCACACAGGTCTCACCCCCTGCTGTGAAGTTGCAGAAAACTCGGAAGGCATCCCGAGCACAGCCCTGGTTGGGGTCGACCCAGTACTCTCCTGTTGGGTGAGGGAGAGGGGAGG-TCAGGGCCACC-TAGGTCCAGGCTCCAAGATGCTCTTTGCCCCCACATTCCCTCTTCCCTCCCAGCC----------------CTCCCCATCATGCTCTTAGTCTCCTGGTCCTCCTCCCTCCCAGAG-CCCTAGAAT-CTAGCCCTAC---TGCTGGATTCTACTGCAGCATCCTACTGCTGCAGCTCACTTTCATCACGTGAC--ACCTCTGCCCCCAACAGTAACCCCAGGCCCTCTGACTGGAGGAGGTCCGAGTATGGACAGCCTCATACTGGGACAACATGTGGTTGCAGGCGCTCACACAGATTCATCTGTTCAGGTGCAA--ACAGGTGTGTGCACGTATGTATGTTTATCTGC------TCCTGCAGACACTgggctgataaccaactggtacacactga----cccagatcagttgctaaagtattgggatacttctgacctggttagtaaatagctgcagttcccagcccctcagccctcacccttaacccaacaccttcaccaagactccccCAGCATCCATTCTGCTTGTTCAGTACCCATGCTGTTGGGGAGATGTTTGTGCACCCTGAGGCTAGCACTGACCATCGGGAAGCTCTGGGTGGCACAGCTTCAGGTCCTGGCAGGTGCGAGCAGGGCTGTCCTGGGTCCCTGTTGGCCGCCTCATCTGCTCGATCTCCTCCCGCAGGGAGTCGAGTGAGCCAAAGATCTCCTCCAGCCCCCCAGGACTGCCGGGGGCTCCCCCGGTCGGTATGGCCTCATCTTCCTGCATCAGACGGCTTCCATCCACCGAGCGCCGAGTCTTCTTGGGCATCTGAATGGGCAGTGGCTGGATCACCTCGCCTGGGGGACCCTGGGTGCAGGGACAGATGGAGAGGGCAAGAGACAAGGTTGGTGTGAGGGTGAAGTGTGGCAGCAGTGGAGCAGAGGGGTACGGCCCTGGGAGCAG-CCCTGACTCCTCACTCACCGGGTGTCCTGGAGGGCCCTGCACACCCTTCTCTCCCTTGGGTCCGCCTGGGCCCTGACA-AGGAATAAATCAGGTCATGGAGGGGTCAAGAGGTCAAGCATG-GATCAAGGTCACAGAAAGATCAAATCAGCCTCCTGGCTGG-AATAAGGGGCT--CCTTGGGGGGAGTCTATTTGTCCTGGAGAGACATCATCAAGTC---CAGAGGGGGTGGAGCAAAGGTCAGAGCTGAAGGGGG--TCACTCACTGTGGCTCCTTTGGCTCCTTTGGGGCCAGCAGGTCCCTGTGAAATGAGGAACAAGAAAGAGACGGTCACTGCAGGGGAAGGACAGGACTCAGAGGAGCGGGGAGGCAAGGTCCCAAGTCCACAGGAGCCTCGGGTTACTACAGGAGGGGCAGTCCTGTGGGAATACTAGGACATTCAGA--GCCCTGGAAGTATGGGG-AGGAGGTACTGGTGGTGACAGGACAAATGGGGGACCCTGAGGACTATGCTTGTTAGGCTGGTAGTT-CCATGGAAGTCGTTGGGAGGCTGTGG-GTGGGCAGCAGAGGGGTTTAGGGGATTTTGTGGAGGAACAGAGGCAGTACTCACGGGGAGGCCGGGGGGACCTCCAGGACCAATGGGGCCGGATGCTCCTGGGATACCCTAGGAAGGGTAGTGGC-TGGTTCAACTGGGTCCTCCTCCCACACCCTCATGAGCACCTGCTCGCTTACCCACAGCTGAGTCCCAACTCCAACTCCACCCCTCTCCA--------CCCCACTCTCAACC-CCCACAACTTCCGGGACCATGCCCTCTACTCACCATCTCACCCTTCTGCCCAGGGGAGCCCTGAGGCCCAGGAAGTCCCCGATCTCCCTTCTCTCCCTGCTCACCCGGGGGCCCAATCAGTCCAATGAGACCTGGGTGGCCCTAGAGAAGGGTGCAGGCAGTCAAGAGAATGCAAAGAGGAGTCATGTGGATGGGGGAGAAGG-----------------GCCAAGAGGACATGGAGAGGGAGCCGGGCACAGGGTCCGTGAGTGGCCCTCACTGAGCAGGGACTC-CCTGGGACTGGCTGCCGGAGGCCTGAAGCAGAGCAGTGGGCACTTGGGTCCCACAGGTTTCAGGGGCGAGGGTGATGGGAGAGACACCTGGCCACGTGTCTGTCTGTCACTCACCTTCTCTCCCTTGGCTCCAGCATCGCCCCGGAGACCAGGCAGCCCTGGGGGTCCCTGTGGAGAGATGGGAAGTCATTCTCTTAAGGGAGAGGTGGGACCAAGTTCTCCCCAA---CAGCCTCCACTTCCTCCAGGGCTTCAGCT-------CTGTCCCAGGG--------CACTGCCCTCACCCCT---CACTCAGCCCAATCC-CAGTCACTCACCACAGGACCTGGGGGCCCAGCCTGGCCTGTAGCTCCAGGTCGGCCTTGCTGACCCTGAAGATTTGAGGGGGCCACAGGGGTCAGGAGGAGCATCCCCACACTGCACCCCTCCCATGGCCCCT---CACTCCCACCCCAGCCCAGCCCTTCCCTGCAGTGACTCACCACTGAGCCTGGGAGCCCCCTCAGACCATCAGGGCCAGGTTTCCCTGCTGGGCCTGCAGGACCCACCGGGCCTGTCTTCCCCGGGGCACCTATAGCGCCAGGATCTCCCTGAAACACACACAAGGAATGTGTCCTGAATGGCAGAGGAGTGGGGTGTGGGCAGGGGGCAGAGGGTCCAAGGTGGGAGGTGGGAGGCAGGGAGGAAGGGCCAAACTCTAGGAGCCCCTAGCGCAGGAACAAGTACAGGGAACGCCTGTCCCCATAAG-GGCCCAACATGGGAGAGGTGGAGATGGGGTGGGCATCTGGAGACGGAGGCATCTGAGG----------GGTGGGAGGCGGAGGGGATGCTCCAGCACT-AGGGCAGCCTGTCCCTCACCTTGGCTCCCTTCCCTCCTTGTCGCCCCTCGGAACCAGGCGAGCCAGCAGGACCCTGCAGGTGGAG-TGGGAAGGAAGAGCACATGAGGCCGTGGGCAGCCAGGCTCAACTCTTCCCCCTTCCTGTCCT-----------------------------------AGacacacacatac--------acatgcacacacacacgtgcatacacaGGGACACGCGCCGAGGGCCGATTCACAGATGTGCAGAACAGATACAGCTGTGACAGTTGTGAAAATACTGGGTAGT-CTGTACATTTGGTGAAGGGCCACTTGCCCACACCCTACCTGGTGGCCCGTCTCCTGCCCCAGAAACTAAAAAG------------GTTCACC----------------------------------------CCTGGCCCA---------------------------CAGAAAAGCTGGCCAGCCCCTCCTCCAGTTTCCATTCTGCTTTGTCAGTAACCACCACTACCCCTGGTGAAAACATACACACCAGAACCCAGGAACAAACATGCCCGAGATACCGCACACCCATCAACCCACCAGCTCCTGCACACACACTCGCCCAGTGCAATGAGATACCGCATACCCTTAAACCCACCAGCTCCTGCACACACACCCTGCCCCGGGCAATGAGATACCACACACCCTTAAACCCACCAGCTCCTGCACACACACACACCCAGGGCAATGCAGACACCAGGCACCTCCCCACCCATCCCACCTGCCATTGCCCAGCCTCCACCCACACAGCCCAGGGACTGCCTCCCAAGGTCTCAGGGGTCCACCTCACTTACTCGCTTTCCAAGTGGCCCTGGGGGTCCATTCTCCCCGGTGGGACCAGGGGATCCCTAGGGAGAGAGGAATTGGGGTGGCTGAGTGTTTATCCTCCAGCCAAGGGACCCCTCAGGAGTGGGGCACAGAAGAGGGGTAAAGAGGATGA-GGCTTGGGCTCAGGGGGG--TGGTGGGGTCACCAGGCACTCACAGGCTGTCCTGGCTCACCATCCTCGCCTCGGTCACCCTTAGCACCATCCTGGCCCTGCAGAAGTGAAGCAAGGTCAGAGGTGGGCCCCCAACTTGGCTGGCATCACCTCCAAAACTGTCAATACC-CCATCCCCTTGCCCACCCTGCCATACCCCC-AGCTTCCCAATACCCAAGCCCAGCGGCCACACAGAGGACCCCCCCATAGAAGC-CCCACCCTTTTTGCCCCTTCCCTTCTCTGAGTAAGACTCACCCGAGGGCCACCTTCTCCAGGGGGGCCAGGGTCACCAGGAAAACCAACAGGACCCTGATCCAGATGGAGAATAAGAGTCAGGGTCACAGCTCCCTAAGCCCACCCAG------CACAGACGCCCACAGGCACACGCCACTGCCTCTCTAGAGGCAGTGCCCACCAGTACCCCCCAGGAAGA-GGTCTCCTGCACC--CCTTTCCCTACCACGTGCACTGCGTGTTGTCTAATTCCTCAAGGTATTAACTGCAGGGCATCTCTCACTTTCTCTCCGGATCCTAGACCCCAGGCATCCCT--CTGGATGCCCCATTCCCAGAGCATCCC--CCAA---------ACTCCCGGGCTCCCCACACTCCAAGATCCTCCC--TCACACACACCCATATTCCCAGGTCTGTCATTCACAGGGCCTGAGAGGACTCAGCCCCCACTGCCCCAAACTCACAGGGTTCCCTTTGGGGCCATCATCGCCTGTGGGGCCTTTAGGCCCTGGTGGCCCTGGCTCTCCTGGCTGCCCCGACTCTCCTTTCTCTCCACGTTCCCCGCGTGGACCCTGCAGAACAAGCGGAGGACACAGATGGCCC--AGGGAATCTTGAAGATCAGGGATGCAGCCTCTGCTTCCGAGACACCTTCAGCCATCCCCTACTCCCCTCAGTGACAATGGGACATACACAGAAAGTCAAGCCTATAAGGGGAGTTCCCTAGTCCC-CTTCCCTTCAAGAAAGGGGAAGAAGGGCTCACTCAGACC-AGGGATCAGGCCTCATAGAGGATGGCAGGGAGCAGAGACTCTT--GCTGCAGAGGAGTTCCAGCTCAAGGAGGTCACAGGAAAAGTGGAGGCAGGGTTGAGGCGGGTGACGGGGACTGGGGAGTAAGGCCTTGGAGCTGTCACTCACCTTGACACCTGGCTCGCCCTGGATCCCTGGAGATCCTGACTCTCCTGGTTCCCCCTGCAAAGAGATTAGAGTCAAAAACCTTCTCTCCTTCCCCAGCCAAAAAATTCTGATATTCC------CCATATCTCATTCTCTTTTGTCTCCCCACCCAAAATTGGCAGAAATCCAACTCCCATCCCCCACTTCCATGACTGGTCCACTCACCC----CCTTCCCAGTTACCTTCTCTCCAGGGGGACCCAGGTTCCCAACACCTCCTGGGGGACCTTGTGGGCCCTGGAAGAGGAACAGAAATAGGTGTCATTGCTTAG-GATGGAGGTGCCATTTCAGGGGCAAAGTCCCAGATGAGCAGCCCAAGGTTACAGCAGTGAGGCAGTGG-AGGCCTCCCGGGAGTAAGGGCTTCTCTTGGCCCCTGAGACGATACTAGAGTTTATGGTCT-GGGAAAGGGAGGCAGAAGACCAGACACATTGGTCTCAAGGGACAGGGGCTGAGATGACTCACATCAGCGCCATTGGGTCCAGCTGGACCTCGAGGTCCTGGGGGGCCAGGTGGTCCCTGGGGGAAACAGATACACCACAGATGAGGAAGGGAAGTGAGA----------TGGCTGAGCATGAATGGTGGAGAG--------------------------------AGGAGGAGGAGCAGCCAGGCCAGGGAGTTGGCAGTGGGGTGTGGGGTGGGGGCTGGCCAGG-----GAGGGGGGTGACTAGTATG-GTGGCTAGGGTCAGTAGGGGTCACACTCACCATAGGACCCACATCTCCTGTTTCTCCCTTCTCCCCAGAGGGGCCTGGCAAACCCTGTGC----AAGTATACAAAACATGGGCCCAGGTGACGACCCCACCCAAAGCACAGCCCTAGGCAGATAGGCCCCACAGTCCCCTCCCCTCAGACTCCGCAGGCCCTCCAGTCCGCATCGGCAGGCTGCTGGCAGAGTCTGGGGCAAAACATCACCCCATCCTGACCCCACCTCTCAGCCCCTGTC-CTATCCCCCAACACACCTGTAGGCCAATGGGTCCTGGGGGCCCATTGAATCCTCTTGTTCCTTCATCACCTTTGGCTCCAAAGTGTCCCTGGGGTCCCCGAGCTCCAGGCTCCCCATCTGCTCCCTGCAGGGTTGAGGGAAAGCAGAGACAAGGACACAGGGATGGGTCATGGGTC-GGTGTTCTCTATCCACAAATACCACACACAGCTGGGTGCCAGGCCCAGAGCCCCTGCTCCCACTCCCAGCCACAAGGGCAGAGGGGAGCTGAGGGAGGACCAGAGGCTGCTGGGCCTTC----GGTGGGGGTGGAGGG---GTCACTCACCGCTGCTCCAGGCTGCCCCACAGGACCAATGGGTCCAGGGGGTCCAGGAGGGCCCTGGGTAAGAAAAGAGAGTCAGAGACACCAAAACAGGGAGAGAGATCAGGTGGGACTGAGGTTAAAGGCCAGGAGGTCAGAAGTCAAG-GTCATGGACACTTACATGTTCACCCTTGTTCCCTTTGGTGCCCTTCTGTCCGGGGTCCCCCACCTCACCCTGGGAGGAGAAGGCAGACAAGATATTAGAGAAAGGTGATGGGTAGAGTGGGAAGGATGACATGACAGGGGC-------CAGGGGTCATGCCCAGGTCAGCCATCTCATCTGGAAAGAAGATTGGTCGGGGTCTGTGGGGTCCCCTCACCTTGTCTCCATCCTCTCCAGCCACACCTGGAGGCCCAGCAGGACCAGGAAGCCCCACAGGACCCTGCACTCCATCTCGGCCAGTTGGGCCAATGGGGCCCTTCTCACCCTGTGGGACA-GGAGGAAGGAGTCATGGCCTGGAGGTGACCCTCACCCTCAAACACCCCACAGGAAACTTGTCATAGCCCATCAACCCTAGGCTCACAGACCCCTCCCCAGTACCCCTCCCCA--------AGACCCCCACACTCACTGGGACACCTTTCTCTCCTGCTGCTCCAGGGGGACCCTGCGGGCCTGGGCGCCCTGGCGGACCAATGGGTCCCCCTGATCCTGCTGCACCTCGTTCCCCAGGGGAGCCCTGAGAAAGCAGATGG--TCAGACCCCCAGGAAGGAGACACCAGCCCGCCCATACCAGAGAACCTCGGACCACAATTCCCAAAAGC---TCCCAAAATCAGATGCATTCTGGCTGTCCCTGGACAGCCTCTGCCCAGCCCCACAGCC--CCTGGTGGTATCAGAATGCCACTCC-CACCCTTCCTCACCCACCCCTTTCCCGGGTCCTTCCTACCACTTCCGGAA--CCCCAGACTCACTGCAGGGCCAGGGGGGCCAGACGGACCTTCATTCCCCTTCAAACCAGGTCCACCCTATGAACCAGACATTTGGGGAAGATGAGACTTCACGAAAAGAGAAGG-GTGAGAGCTGGAGAGGGAAGACAGGCTCCAAAAGATGGAAGTGGGGAGTGACATGGAGGGGG-------------TCAGGGA--CAGGGTCGGGGGGGGGACTCAGGATGCTTGGTGCTTGTGACAGGCAGGGGTCTGGGAGTCACACTCACAGCAGTGCCTGGGAGGCCTCTCTCTCCTGGGAATCCCCTCAGACCAGCAGGACCATCCTTCCCTGGGGCCCCAGGGGGACCAGGGTCACCCTAAAAGGAAAGGAGAGGTGATGAGCCACA--GCCATGCTCCCAAATTAAACAGAGAGCTCTCCAGCCCCCCCTCAAATCTCCAACTACCTGTTCCTTTCAGCA-----CCCCAATCCCCAGCTC----CCCCAC---TTCCCCTCTGCCTGGCCCCTCACTGACCTTTGTTCCTTCTTTTCCAGCTGTCCCAGGTAGTCCCTGCTCTCCAGGGGGCCCCGGGGGGCCTGGGTGACCTCTCTCCCCCATAGGGCCGGTTTCTCCTGCTGCTCCCTAGACAAAAG-CAGAGAGAGTTCCTGCTCTCAGGCCCTTCATCTCGCTGTCTGCCAGAAGAGCCCACCCTGGCCACCCTAAAACACTCCTTCAGAACCCCTTTATCCCTGCCCCAAAGCTCCTGGGAAATTCCCCGG-CATTCCTGGGCCACTG--CTGGGTTTTCTCCTGCCCCA-TGTGGAGT-AACTACACCACCTTGTGTCTCTGTTGGGGAACTGCCTCTCCTGGGGGACAAGACGATGAGAATGCGCCCCAAAAC-AGACTGAAGTTCAGGACCCCTGCCTGAAATCCCAGCCCCCACCATTGACCCCAGCCCCAGGAGTCTGGGTCAGGTGGA-CCGGGGCAGGGGCGTGTGACC-------GAGAGAAGAGGGGCAGACAGACTAATGCTAGGGTCAGGGGTCCATTCTCTCCTAGGGACAAACCTACCTGAGGTCCCACCACTCCTGGAGGACCAGGGGGGCCGGTCTTCCCTTGGAAACCCTAGGCGAGGAAGAGAGGAGAATGCAGTGAAAGCA-----GGTGTGGGCGCTGTGGGGCAGATTCC------CAGGAGGAAGGATCCCAGGCAGGATCAC-ACCGAGCCCTGGGCCCTGGGTCTGAGCAGCACCAGGGCAGGCTCC--ACTCTGCCAGGAGAACGTCCCTG-TGGGCTTTCCAGACAGCTCTGGGGTTAAAGGGTCTGATGGAGCCCCCTGAGAATGGGTAGCCAGGAGCATCACTCACCACTTCTCCTCTTTGGCCTGGGTGTCCCGGCAGCCCGTCCTTCCCAGGGGGGCCCTGGAAGGGGTTCAGTTGTCAGGTGAACTCTCAGCTGGAAAGCAGGTAGG----GAAGAAGGACTCAGAGAAGCGAGGGGGGTCAGAGCTCGG-GGTCAACTTACCGGGGGTCCTTTCGGTCCAGGAAACCCGTTGGGACCCTGAGGTCCAGGGAGGCCCTAGAGACAGAGGTGGGGGGAGTCAGGAGAATGGGGGCAGGGGCTGAGTGGGGGAATTCAGCTTCCTTC---------CTGGGGTGAGGAGGGAGCTGGCT-CACCCAGGCTCCCTGGGGACCTCAGGGGAAGGGGACTTTCGATCCACACTTACCCTCTCTCCAGGGGGCCCATGGGGGCCATCACCACCAGATGTTCCCTGTGGGGGGAAACAGAGTCAAGGAGTGGGAAGAGCTGCTTTCCAGCTGTCCCCGAGGTCAGGATGTTGAGGGAGAGC---TGGGGCTGAGTGG----GCAGGGGGCAGTTGGAGCCTTGTAGAGACCATTCACCTTAGCTCCAGACTTCCCAGTGGCACCTCGGGGTCCCCGCTGACCCCGTGGACCCTACAGAG--GGAAGAGGAGTTGTCAGAGAAACCCAAATGCCCCCCTCTGGACCTTGAGCCACCTGTTTCTCTCCCCTGCACTCACCGTGGGGCCCCGTTCTCCCCGAGGCCCTGACTTCCCCGACAGGCCCTGGTGGGAATGAAGCAGAGAGAACA--TTACCCAGGGTGAGACTCCCCA-CAGACCCCCTCTACACCTCTCCAGCCCTTCCCTTCTCACCCCCTCCCACCCCCCAGCTTACCCGGGCTCCCTTCTCTCCACTGGCACCAGGAAAGCCAGGAAATCCTAGGGACCCCTGGTGAGAACGGAGAAGGGGGGAAATTGAGAAGTTATGAAAGGTAGGGTTCAGGAAGGggcaaagggggtcaggagaggccacaaaggcagtggccagggagacccgagctctgccaagaactaagtggccttggacaa----------acccctgctgctctctgggcctct-ttcggtcatctgtaaaatgggggtcagctaaattccctctggggtcccccactgccctgcatctgtgcttTCTGGAATCAGGGATCAGGGAAGGGAAGAGGAGGAGGGAAGAGGAGGAGGGGCACGTATGGGGCATGGCATCACCTTGGGTCCCTGACGTCCAGGATAGCCAGGCAGACCAGGAACACCCAGCTTGCCCTGTGGAGGGACAGGAAGCAGTTAGGAGTGAGAGGAGGCCCAGATGCCACTCCACCCCTGGAGACCTCAACCCTCACATATAACAGCCAGCCCCCACCCAGCAACACACCCCA-CACACCC-CAGCCTC-TAGCCCCTCATTGCTTGCCCCACAG-CTGCCTGACTTTTGTTGTCTCTCCTTCCCATGAGTGGATTTTCCCCAATTCTAGTGCTGGG-ATCCCACCTCCCCTGCGCCTACAGA-----GGTATCAGGTCCTTCAGGGTCACTGTGATCTAGCTGCTTCCCACATGTCAACCTCAGCTCCATCTACCCCATGAGGGAGGTGGGATCTACCCCAGCACCCACTCCTGCTTCACCAAGACCAATCCCCCTGCAGGCCC--------------------------------TTTGCCCACCACACCCCGACTCCC----GTGCATGCCCCCTTCC-CCAGAGGCTCCAGGGCTCACCCTGCCCAggcagctgcagagcagggcttagaagcagagattctgaagccagactgcctgggcataacccctggctctgcccttcactggccatgtaatcaacaagcatc--------cctgtgcctctgtaaaacctcagcaaaacagtacgtcaca---tgcctacctcataggatagataggacgcatcagcacagcacctggcatagggcaagtgctGGGGAGAGTCAGCTCTGGAGACCACAGACCTCACTGCTATTAGACTCTCTCATCTCAGAACTCCTGCTGCTTGGAGTCCGAACGCATGTTCACTCTGCCTTGAAGCAACAGCTACTCTCTAAGCTTCGT-CTCCGTCCAACTCTTCGTGTCAGG---------------GACTTTTCCCTGACTTCTTATATATCCCCTCTGCCCATCAGCAGCTG---------AGAGATGCCATTTACACAGACAGAAGTATGACTAATGCATGGCCATCTTCAACTGACTGGCTGACTTCAGCGGCGGGCA-CCCATGCCCATCCTGACCCCAGTGCCCACACCCCCAGAGGACCCAGGCACAGAACCCTCATCCCATCACCTTCTCGCCCATGAGCCCTGGGGGCCCAGGGTCTCCAGTCGGTCCAGTGCGTCCCTTTGGCCCCTCAGGACCATCCTCTCCCCTGGAACCAGGGACTCCAACTTCGCCCTGTGTGAGAGGGAAGGACAGGTGAGTGCTGGGGACTGGAGGTGGGCTCTGGGCCC--AGAGGAGAAATGGGCAACAGTGAGGCTGAGGAGGGCTAGAGGGGTCCCAGGAGCCACTGCAGGACAGGAAGCCC-ACAGGG-TAGGGATAGTGTAGTGATGGGAGGGCAGGCATGACACAGACCATGGGGCTATCATCCTGTAGGGGTCAGGCTCCCAAGGGAACACAGCACTGGAACTGTGGAGTCTGGAGACTCAGGAGAATAAACCGGTGCTTGGCGTCTCCAGAGTGGAGGCTCAGTAGAACACGGAATTGGGGCCAGTGTG-GGGTCTCTACTCACCCTGTCACCTTTCACGCCTATGTCACCTTTGAACCCAGGAAAGCCATCCTCACCCTGAGAAAGATAGAGGTGAGAGGGCACCACAGATGACAGAGGGCTG----GGGTTCTAATGGG--AATTCTGAGAACATAGGTGGAAGCAGGGGCTCGGGAGCTGGACGGCAGTGCGGGGCAGGCTGGAGGGAAGGCAGTGAAGAGAGGAGATGG------------------CAGGACTGAGGTGCTGGGAAGCTGGGGGCATGGTGCTCACCTTCTCACCCTTATGACCCTTCAGACCCCGAATTCCGTCCACACCCTAGAATTAGAGAGGGGATAGAAGTAGACTGATCAGGGGATGGAGGT-GGGTTGGAAGGACCAAGCTCCTAAGACCCCATATAGCTCCCCTGACCACAGCCCTTTGTCTCCCAGCCTGGTGGTCAGTTACCTTGACCCCTCGAGGTCCTGGGTATCCTAGAGGTCCCTGAGGTCCAGAGGGACCCTGGAAGATAAAAGAGAGGCATTTATAAAGGGGCCTCAGAGTGTCACTGTGGGGGCCTCCAGGGGTGGAAGAAATGGAAGTAACAACATTGCTGTCTGGGTAGGGTTACAGGGCACAGGAATTGAGAATGTGGCAGAGCCATATGAATAATGAGACAAGGGAATCCCAAGGACTTTGAGGCTCTAGAGTCTGAGTGGAGACTCCCTCAGGGGATAAAG---ACATGGAAGATCTCACCTGGTTTCCTTTGGTTCCAGGGGGACCTTCCTTCCCTGGGTGACCCTGGGAGTAAGGGATAGAAAATGTGACCAGTGGCCCCTGTCACCCTCTCTGCACCCCTCCCTACACTTCTTCCAACCCAAATTTCC--TGTGACC-TAGTGAAGCCAACTGTCCATGGACAAGCACCACCAGTG-ACCTTTCAGTGCAAGGG-----------------TCACTAAAGGAGCTCTGAGGTCATGCACTGGGGTGGAAGGCCAAGGGGAACT-GGATTCGGAAGTGGGGTCCCACTCACCGGGGGTCCGTCTGAGCCAGGCATGCCGGGGAGCCCTGGCTTCCCTTGAGGACCCTGCAGGAAGACAAAGAGGCTCAGGGTCACTAGAGGGGTCATGTCTGGACACAGACAAAATCCCAGC-AGACATTTAGGGTTCTCCCTACATCCCCACTCTAAACCCCCTGTCCTCCAAATCACTTAGTCACTTACCTTCTCTCCATGAGGGCCGATGGCACCCTGGGGCCCGGGAAGACCCTACAT----------ACAGGGAAAGAGAAGTCACAGGGGCCTCCCAGGG---------TCTCTTCTAT--CCAGCCTCCCGGATTCAAAGCATGAGCAACAAGGGCCTGAAACCCTTAATTTCCTGTATCCTTCCAGGGTCTCACCCATTGTGGAAGCCCAAGGGAAGTCATGAAAATTGGGGAACGGAGTAGGGGCACCGCTCACCTGGGTCCCAGGGGTGCCCTGTTGTCCAGGAGGTCCTGGCTCTCCCTGGGGTCCCTAGAAACAGGTGACCAGGCACAGGTCAGAAGGAGATGGAGATAGAACACATTTAGAGCATGGAGCTGAGTCCCAGCAGCGATAGCCAAGAAGGCAAGAGCAGGAAGCAGGCAGGGG----------------------TCAAAATGGAGGCCAACAGGATGCTGGCAGGGACCTCGGGGGATAAGAATGGGGGTGGGATCTCC-TATCCATCACTCACCAAGCTCCCTTTGGGGCCCTGGGGACCATCCATGCCTCGGACGCCCTGAAACACAAGATGGGTGTGAGCAGCCTG-AAGGTGG---------CCCGGAGGGACCTGTGGTTT-TCAGAGGCCCGGCCATTCCCGAGGGTGTGACGG----------------TCAGACCTCCAATCCATCCCAAACCCAAGCAAACACAGCTGGCCCAGGCCTGCAGTGTGTGGGACTGTGGATCTGTGGGCTTGTGGGCTTTGGTTTTGTTTTTCTTGAAGATTT s canFam2.chr12 5631757 13907 + 75515492 CCCTGTCCAGGCAACTCTGGGGATGTCTGTACAGGCTGGGAGTGTCTGTGCGCTCCTGTGCCTTCAGGGTGTGGGAGGTGGTTTGCACACCTGTGTGCTT--GTCGGGCAACC-TGTGTAAATGTGTGCACGAGCCTGTATGATTCACTCTGCATGCTGCTGGTGGGCGCACCAAAGGTGAATCCCACC-------TTCCATCTTTCCCACCCTCCTCGCCCCTGTCTGAGCTCCCTCGAATACATCTGACA--CCAAGAAGCTGGACTCCTCC-TGGTCTTCCAGGTGCCTCTACCCAACAGGTCTTC------------TGCAGCCTGACTCTGGGATGCGCCCC--ATCCAGCTCTTCCTGCCTCCCACCTGACAGCCATCTCTGAATTCCTTGACATAGGGGCTGGTCTCCAAGCTCAGCTCATCCTCATTGGCCCCCCGGAGCTTCAGGGGACCCTCTCGGGCCACCCCCAAGCATGGGTAGGAGACATCTTGGTGGGCTGAGACGCTGAGCAGCCGCAGGAAGGTAAGCTGGACCACACCAATCGGGGAGCCCTCTGAGTCCACGTAAGAGAACTGGGGGGAGAGAG-------------------GACAGCGATG---------AGGGGCAGACAGAGCAGGGCTTGCGAAGCATCTACAGACACAAGGTCCCCAGCCCAGGGTTCTTGGTGGGGACTCACTGGGCAGAAAGGGCTGGGGGATAAATG--GGCCAGAGTGGGAGACAGGGAGGACTTACTGAGGGCAAACAAAAGGCAAACTCTGTCTTGGGTTGTCAAGGGAAGGAGACAGAGTGGCAGAGGGCTGGTAAGAGGATAAA--------AGCCAGGGAA---AGAAGGGGCAA-AGGCTCTGTAGGGG-------CCAGGGCACCTGTCACATAAACCCAGAAGCCACT----------GGGCTGCACAGAGGAGCAGGGGAGGAA-AGTCAGGGGCCAGCTCTCACTTGCGTGACATCATCTCTGGGAGTCACACACGTTTCCCCTCCTGCTGTAAAATTGCAGAAAACCCGGAAGGCATCCCGAGCACAGCCCTGGTTGGGGTCAACCCAGTACTCTCCTGTCAGGGAAGGGAGAAGGAAGGGTCAGGGCCCCCACAGG--CAGGACTCAAGACACTCCTTGACCCCT--TTCCCACTCCCCGCCCTGCTGTTCCAAACCCCACTTCTCCCCACCACGCCCTTGGTCTCCCGGCCCCACTCTCCCCCAGAGTCCCTACAATACCACCCCCACCCATACTTCATTCCAT--CATCACCCTAC-----------ACTCTGCCCATCTGAGGGACCCCTTCCCTCAGCAGTACCCCCAGGCTCCCACA---GGGGAGGCAGGAGCACTGACACCCTCACATCAGTACAATAGGTGGTTGTAGATGCACACATGTGCCCGTTAGTATAAATGCAAGCACAAGTGTACACATGCATGTGTGTGCATGTGTGCCACTTCCTGTAGGCAGCGGGCTGATCATGAGCTGGTGCACACTGGGAGGACCAGATCAGCCGTTAAA-TATTGAAATACTTCTGACCTGGTTGGTAAAGAACTGCTGTCCCAAGCCCCG-AGCTCCGAGCCCCCACCCCACACCTTCCCCCAAGAGCCCCTA-CATCCATCTGGCTTTT--------CATTCCGTTG--------------TCTCCTGAGCCTGGCACTGACCATCAGGCAGCTCTGGGTGGCAGAGCTTCAGGTCCTGGCAGGTGCGGGCAGGGCTGTCCTGGGTCCCTGTCGGCCGCCTCATCTGCTCAATCTCCTCCCGCAGGGAGTCGAGGGAACCAAAAATCTCCTCCAGCCCCCCAGCACTGCCCGGAGCGCCCCCAGCCGGTATGGCCTCGTCCTCCTGCATCAGGCGGCTTCCATCCACCGAGCGCCGAGTCTTCTTGGGCATCTGGATGGGCAGGGGCTGGATCACTTCGCCTGGGGGGCCCTGGGTGGAGGGATGGGTGGAGAGGGTGAGAGACAAGGATGATATGAGGGGGAAACG-----------------ACAGGCACAGTCAGAGAAGCAGGCCCTGACTTGTAACTCACCGGGTGTCCTGGAGGACCCTGGATGCCCTTCTCGCCCTTGGGTCCAGCTGGGCCCTGCCAGAGGAGTAAATGAGGTCATGGTGGAGTCAAGGGGTCAAGCAAGCAATGAAGGTCACAGAAGGGTCAAATCAATCTCTGGGCTGGGAATGAGGAGTTTCCCTGGGAGAGAGCATGTTTGCCCTGGAAAG----TGTCAAGTCTGGCTGGCGGAAGGGAGCAGAGCTCAGAGTTGGCTGGGGCATCACTCACTGTGGCTCCTTTGGCTCCTTTGGGGCCAGCAGGTCCCTATGAAATGAGGAATAAGAAAGAGGTAGTCACCACAGGGGACGGTTGGGATATGGAGGAATGGAGAGGCAAAGTCATGAGTCCACAAGACCCTGGCTTTCCTACAGGATGGGCAGGCATGAGGGGACTCGGAGACATATGGGAGGCCCTGGAAGGGTGGGGGAGGAAACACTGCAGGTGTAAGGACATATGGAGGACACTGGGGCCTATTCTTGTT-TGCTGGCTGTTGCCATGGAAGCCATTGGGGGATTATGGAGGGGGGAGCATTGGGGTTTAGGGGATTTAATG-AGGAACAGATGGGGTACTCACGGGGAGGCCAGGAGGCCCTCCAGGACCAATAGGGCCAGATGCTCCTGGGATACCCTAGGAAGAAGAGAGGCATGGTTCAAGTGGGTCTTCCTCC-ACATCCTC-------------CGTCCCCCTAC-GCTGAGTCTCCATTGCCACCCCACCCACCCCCAACATGAATCCCCACACTCATCCTCCCAGACCTTCCAGGACCATGTCCTC-----ACCGTCTCTCCCTTCTGTCCAGCAGAGCCCTGAGGGCCAGGAAGTCCCCGATCACCCTTCTCTCCCTGCTCTCCAGGGGGACCAATCAGTCCGATGAGACCTGGGTGACCCTGGAGGAGGG-ACAGGTGGTCAGGGGGTGGCAAAGAGGAGACACAGGGATGCAGAAGAAGGAACCTACAAGGGTCAGAGCCCAGAAGACA---AGAGAGACTCGGGCCCAGGGTC----------------TGAGTAAGGACCCTCCAAAGACTCAGTGCTGGAGGTCTGAAGCACAGTGCTGGGCACTCAGG-----------------GTGTGGATGA--GGGGAGATGCCCAGCCA----TAAGTCTGTCACTCACCTTCTCGCCCTTGGCTCCAACATCACCCCGGAGGCCAGGAAGCCCTGGGGGTCCCTGTGGGGAGACAGGAAGTCACTCTCTCCATGGGAAGGTGGGACCAAGCTCTCCTCACTGCCATTTCCCACTTGGTCCAAGGCCTCCGCTGCATGCCCACTGCCAGGCGACAGCACCATCGTCCTCACCCCCACCCTCCCCACCCAATCCACAATCACTCACCACAGGACCTGGAGGTCCAGCCTGGCCTGTGGCCCCAGGACGGCCTTGCTGACCCTGCAGAGCCAAAGGGACCACAGAGGTCAGGAGAACTGTCCTCATATGGGCACCCTCCAAAGGCCCCTGACCCCTCCTACCCCAGCCAAGCCTCTCCACTCCATGACTTACCACTGAGCCTGGGAGTCCCCTGAGACCATCAGGACCAGTTTTCCCTGCTGGGCCTGCTGGACCCACAGGGCCTGTCTTCCCTGGGGCACCCACAGCACCAGGATCCCCCTGAAACACATGCACGGAATGAGTCTTAAAATGCAGAGGAAAGGGATATGGTT-GGGGGTAAGGAGTTCAAGGCAGATGGGATGAGGCAGAAAGGAGAGGCTAGTCCCCAGGAGCCCCTGGAGCAGGAATAAGTATAGGGAACCCTCATCAGGGCAAGAGGCTCAACATGGAGGAGCTCGACATGCCATAGATGTCTGGAGA--GAGGAATCTGAGAAACCAGAAGTGCCAGGGGATAGAGGGAACACTCCAGCATTCAGGATGGCCTCTCCCTCACCTTGGCTCCCTTCTCTCCTTGCCGCCCCTCAGGACCAGGCATGCCAGCAGGACCCTGCAGATGAAGACAGGAAGGAAAAGCTGAT-AGGTAGGGAGTTGCCAGGCTCAACTGCTTTCCCCTCCTGTCCTTCTGGCCTCCAGTGACTGTGCGCATGTGAGCATGCATGCACACACAGACTTCCTTGTGCGCGCACACACACACTTGTGCATGCAGAGTCACA-----GAAGCTGATTCACAGACG-----AGCTGGTATAGCTGTACCACTTGTTAAAATACTGAGGAGTTCTGTGTATTCTGTGAAGAGCCACTTGCCCCCACACCATCTAGTG-CCCTTCTACTGC---AGCAACTGGAGAGTTAATCCAGTTAATCCACCGAgcgggggggggggggggggcccggggACCAGCCAGGGGCCTAGCCCGGGGCGGGGGCAGGGTGGGGAAGCCCTCTGGGAAAGCTAGCC---CCTTCCTCCAGTGTCCACTCTGATCAGTTGGTGATTCCCACCACCCCTGGCAAGAAGATACATAGCAAAACCCAGGAATGGACG----------------------------------------------------------------------------------AACTCAC--------------------------------TTATATAGGGCACACTCACAGATACAAATGTTCACACACATATGCACCCC-------------ATCCCAGGCACCTCCCTGCCCATCCCATTTGCCACTCCCC----TCTATCCACCCTGCCCAGGGACTGCACTTCAAGGTCCTGGATGTCCACCTCACTTACCCGCTTTCCAAGTGGTCCAGGGGGTCCATTCTCCCCAGTGGGACCAGGAGATCCCTATGGAGGGAGGAATAAGGATGCGTGAGCATTTAGCTTCCAGTCCATGGAACTTTCAGGAGCAGGGCATCAAAAGGGGACAATGGGCCTGAAGGCTTGGGCTCAGTGGTGAAGGGAGGGGGCACTAGTCACTCACAGGCTGTCCTGGCTCGCCATCTTCTCCTCGGTCACCCTTCGCACCATCCTGGCCCTGCAAGGACAAAGCAAGGTCAAGGGTTG--CCACAACCTGGCTGGCATCACCCCCAAAAGTGCCAATCTTTCCAACTCTCTGCCTGCCCTGCCATACCCCCCAGCTTCCCA-CACTCAAGCCCATCAGCCACACAAAG-----TCCTGTCCAGGTACCTACTCTCTATCCGCCATTCTCTCCCTAGGGAAGACTCACCCGAGGGCCGCCTTCTCCAGGAGGGCCAGGATCACCAGGAAAACCAACAGGACCCTAATGCAGA----GAACAAG-GTCAAGGTCATAAGCCCCTAAGCCTACCCAGAACTAACACAGACCCCCATGT---CACACCTCTCCTTCTCTGCCCATAGTGCCCGCCTGCATGCCCTGCGAAGGTGGTCTCCTGCACTTGCTTTTCCTCACTTCCTGCACTTCATGCTTTCCGATGCTGTCAGGCA---ATCAGAAGGCATCTCTCACTTTCTCT---------GGATTTCATATGTCCCTTCCAGAAGACCTCATTCCCAGAGCCTCCCACCCAAGTATCCCCCACTCTTGGGCTCCCCCTACTCCAAGATCCTCTCACTCAAACACACCTACATTCCCAGGTCTCTCATTCACAAGCCTCCC----CTTCCAGCCCTGCCCCCCCAAACTCACAGGGTTCCCTTTGGGGCCATCATCACCGGTGGGGCCTTTGGGCCCTGGTGGTCCTGCCTCTCCTGGTTGCCCGGACTCTCCTTTCTCCCCACGCTCCCCGCGTGGACCCTGAAGGATGAGTAGAGGGTACAGATGGTCCCAAAGGGCTCTCGAAAGTCAAGGATGCAGCCCCTGCTTCCAAGACACCTTCAGCCTCCCCTCTACCCCCTCAGTGACAGCGGGATGCATACATCAAGTCAAGCCCATA--GGGAGTCCTCTGGTCCCTCTTCCCTTCAAAGAAAGAGC-GTGGGGCTCACTCAGACCCAGAGGTCCAGCCTCACAGAGT---GTCGGGGGCACAGGCTCCTAGGCTGTGGAGGGGCTCCAGCTCCAAGAGATCACAGCAACCA-GGGGCTGGGGTTGATTAGGGTGATGGGGATTAGGGAGCAGGGTCTCAGAGTTTTCACTCACCTTGACACCTGGCTCACCCTGGACCCCTGGAGATCCTGACTCTCCTGGCTCCCCCTGCAAGGAGACTGGGGTCAAACACTTCCTTCCACCCCCCA---AAAAAATCCTGATATTTCAGTCTCTCACATATAATTCTCTCTTG---------CCAAAACTGGCAGAAACCCAACACTCATACC--ACCCCGAAGACAAGTCCATTCACTCATCTCCTTCCCTGTTACCTTCTCTCCAGGGGGACCCAGGTTCCCAACACCTCCTGGGGGACCTTGTGGGCCCTGGAAGAGGAACAGAAATAGGAGTCGTTGCTTAAAGGAGGAGGTGCCATTCCAGGGGCAGAG-CCTGAATGAACACCCGA--GTCATAGCAGTGAGACAGTGGGAGGCCTTCCAGGGCAGGTGGCTTCTCGTGGCAGCTGAGATGAGACTAGAGTTTATAGTCTAGGGAAAGGGAGGCAG--GACTGGCCATGGTGATCTGCAGGGAGAGAGGCTGAGAGGACTCACATCAGCTCCATTGGGTCCAGCTGGGCCTCTAGGTCCTGGGGGGCCGGGTGGTCCCTGGGG-AAACAGATACAGCAAAGATGGGGAAGCGAAGAGAAAGAAAGAGCAGTAGGCACATAAGAATGCCAGAGGGTTGGGGGAGGCAGACATCTTGAGAGGGTGGCAAGAGAGGGGGGCAGCCACGCCAGAGAGCAGCCGGCAGGGAGCAGGG--GATGCTGG--AGGTGCTGGATAGGGGTGACTAGTAGGTGGGGTTGGGCCCAG--GGGGTCGCACTCACCATAGGGCCCACATCTCCGGTTTCTCCCTTCTCACCCGAGGGGCCTGGCAAACCCTGTGTTGGGGGGGGGACAGGGTACAGACACAGATGACCAAGCCACC-AGAGCACAGCTCCAAGTAGACAGACCCTGCAGTGCCCTTCCCTTCCATCCCACATGCCCCCCAGTCCTCAGCAGCAGG-GGCCAGTAG-----GGGGCAGCAGA----CCCATGCTGACCTCACCTCTCAGCCCCTGCCTCTAGCCCCCAACTCACTTGCAGGCCAATGGGTCCTGGGGGCCCATTGAATCCTCTTGTTCCTTCATCGCCTTTGGCCCCGAAGTGTCCCTGGGGTCCCCGAGCTCCGGGCTCCCCATCTGCTCCCTG--AGGTGGAGGAAGGGCAGGGGCAAGGACACAGAGATGG-TCCTGGGTCAGGAGATCTCTATTCCCAAACCCCACATCGAGCTGTGCACTAGGCCCAGAGCCCC-GTCCCCACACTCAGCCCCAGGGGCGAAGGGGAACTGGGGGCAGATTGGAGGCTGCCCACACCTCTGAGGGTGGGGATGAGGCATCAGTCACTCACCGCTGCTCCAGGCTGCCCCACAGGACCCAGGGGCCCAGGGGGTCCAGGAGGGCCCTGGGGAGAAAAGGAGAGTCAGAGAGACCAGGACAGGGAGAGAGACCAGGTGGAAATGAGGTTAAAGGCGAG-AGGTCAGAAGTCAAAAGTCACAGTCACTTACATGTTCACCCTTATTCCCTTTAGTGCCCTTCTGTCCGGGATCTCCCACCTCACCCTGCAGGGACAAGGCAGGTGAGATATTAGCATAAGGACCTGGGTAGGCAGGGAAA----ATAAGGCAGGGGTGGGGGGGTAGGAGGCGTGCACAGATCAATGATCTCATCTGGAAAGAC--TGGCCCAGGGTCTGTAAG-TCCCCACACCTTGTCTCCATCCTCTCCTGCCACGCCCGGGGGTCCAGCAGGGCCAGGGAGCCCCACGGGACCCTGTACCCCATCTCGGCCAGTTGGACCAATGGGGCCTTTCTCACCCTGTAGGAAATGAAGAAAGAAGTCATGACCCGGAGACAACCCTCATCCTC----------------------CATGGCCCAGCAGCTCACAGCTCACAGACCCCTCCCCAGTGTCTCCCCCCACCAACCCGGGGATCCCGCACTCACCGGGACACCTTTCTCTCCTGCGGCTCCAGGGGGACCCTGTGGGCCTGGTCGCCCTGGGGGGCCAATGGGTCCCCCAGATCCTGCTGCACCTCGCTCCCCAGGGGAGCCCTGAGACAGGAAATGGAGTCAGACCCCCAAGGAGGACATCACAGCCCACCCACATCAGAGGAGTCCTGACCATGGTTCCCAGGAGAATAGCCCAAAATTGAACACACTATGGCTGATCCTAGATACCCTCTGCCCAGTCCCACAGCCTGCCTAG----ATCCAGATGCCACTCTTCATCCTTCCTTACCCACTC-TTTCCTGGTTCCTCCCTCCTGCCCCCCAAAGCCCCCAGACTCACTGCAGGGCCAGGGGGACCAGCCGGACCTTCGTTTCCCTTCAAACCGAGTCCACCCTATGAACCAGAGATTTAAGCAACAGA------TATGAGATGGGAAGGTGGGATATTTTAAGAATGA-----GGGTCCAAGGGAC--ACGCAGGGAAGGACAAGGGGAGGGAGGGGAGACAGGCTCAGGGAAACAGGAGTGGGGGTGATGCCCAG--TGATTTGTTTCT----CCTGCTGGGAGACGGGGATCACACTCACGGCAGTGCCGGGGAGGCCTCTCTCTCCCGGGAAGCCCCTCAGACCAGCAGGTCCATCCTTCCCTGGGGCCCCTGGGGGACCAGGATCACCCTAAAATGAAACAAAATGTGATGAGCCACATAGCCATGCTCCCAAATTGGACAGAGAGATCTCTGGCCTTTG-TCAAATCCCCAATTATCTGTTCCCTTTAGCAACGTCCCTCCACCCCCGACTCTAGTCCTCACAAGTTCCCCTCTGCCTGACCCTTTACTCACCTTTGTCCCTTCTTTTCCAGCTGTTCCAGTCAGTCCCTGCTCTCCAGGGGGTCCTGGGGGCCCTGGGTGACCTCGCTCCCCCATGGGCCCCGTCTCTCCTGCTGCTCCCTGGGGATGAGACGGAAAGACTCC--------AAGCTCATCCTCTGCCCCTTGGCCA-AAGAGGCCACCCTTGCCACCCTAAGATAAGCCCCCTGGAGCCCTT-ATCCCTGCCCCAAGGCTATTGAGGAATTCCTGGGGCTCTCCTAGGCCGCTGTGCTGGGGC--CTAATTCCCCAGTTTGCAGTTAACTGCACCACCCAGGGTTCCCACTGCGGAACTGCCCCTC-TGGGACACAATGAGATGAGAACTGGCCCAGGAACCAGGCTGAAGTT--------------GAGATCCCTGCTCCAA------ATCCCCACCCAGGGCACCTGGGGCAGGTAGAGCAGGGGCTAGGCCATGTGATCAGGAAAAGGGAAAAGAGGAGCAGATGACCT----CCACGGTCTGGGGTCCACTCTCCCCCGAGGGCAGACATACCTGAGGTCCCACCACCCCTGGAGGGCCAGGGGGGCCAGTCTTCCCTTGGAAACCCTGAGAGAGGAAGGAGAGAGA--GCAGTCAAAGCACGTCAGGCATAGACACTG--GGATAGACCCCAGGTTCCTGGAGAAA-------AGGCAGAGTCACCACCGAGTCCTTGGTCATGGGTCTGAGCAGCACCAG------CTTCTGACTCTGCCACAACAACCTCCCTGGTGGGCCTTCTAGACGGCTCTGGACTGTGAAGGTCCGAGGGGGCC-------------------AGGTCGTTACTTACCACTTCTCCTCTCTGGCCTGGGTGTCCCGGCAGCCCATCCTTCCCAGGGGGACCCTGGAAGGGGTTTAGATGTCAAGCAAACTCTGGGCTGGGAAGGAGGATGGAGGAGAAGAAGGATTCATAGAACCAGAGGCCGTCAGAGGTCAGAGGTCATCTTACCGGAGGTCCTTTGGGGCCAGGAAATCCATTGGGGCCTTGGGGTCCAGGGAGACCCTAGAGACAGAGCCGGGTTGAATCAGGAGAATAAG--CAAGGGGTG------------CAGCTTCCCCCACCCTACCCCAGGGGTGAGAGATGAG--GGCTTCACTCAGGCCCCTCAGGAAGCGCTAGGGAGCAGGAGACTCAAGCTGCACTCACCCTTTCTCCAGGGGGTCCATGGGGGCCGTCACCACCTGATGTTCCCTGTTGGGGGAAG-AGAGTCAGGGGGAAAGAGGAACTGCCTTCTAGCA--TCTGGAGGTCAGAG----GAGGGAGACCACAGGGAGCTGGATTAAGCAGCAGATGGCAGAAGAAGCCCTGCCAAGACCACTAACCTTAGCTCCAGACTTCCCAGTGGCACCTCGGGGTCCCCGCTGACCCCGTGGACCCTAAAGAGAGGGGAGGGGAGTTGTCAGAAAAACCCAAATGCACCTCTTTGGCTCTTGATTTCCATGT--CTGCCCTCCACACTTACCGTGGGGCCCCGCTCTCCCCGAGGCCCTGATTTCCCCGACAGGCCCTGGTGGGAAAGAAGCAGAAACAACACCTCACCCGGGGCCAATTCCACCAACAGAGC----------------AGCCCTGCACTCCACACCCTCTCCCTTCCCCGGGCTTACCCGGGCTCCCTTCTCTCCACTGGCGCCGGGAAAACCAGGAAATCCCAGAGACCCCTGATGAGGTGGAGAGAAGGAAAGATTTGAGAAGTCCTGAAAAG-------------GGggcagcagggt----------------------------gggagatctgggctctaccagtaactaggcagccttggacaacccccagtccgcccctgctgctctctggctctctattctcccatctgtagaatgggattaggctaaattcgctctagggccccccactgctgtcagtctcttcttcCTGGAATCAGGAGTCAGAGGAGGGAAGAAGAGGAGGA------------GACACACATCGGGCATCAAATCACCTTGGGACCCTGGCGTCCAGGGTAGCCGGGCAGACCAGGAACACCTAACTTGCCCTGTAGAGAGACAGGGAGCAATTAGGGGCAAGAGGAGTCACAGA--CCA-TCTATCCATGGAGATCCCAAGTCCCAGAGACAGGAGCCAGCTCCTACCCATCAAGGCTCCCCAGCAAACCTTCAGCCCCCTGGCCCCTCATCTCGTACTCCATGGGCTGCCTGGCTTTTGTAATCTCTCCTTCCTGAGAGTGGATTTTCCCCCA--CTGATGCTGGGCATCTCACCTCTTCTGTGTCTTTAAATCCGTGGCTCCATGAAGTTCCTGGGGATTGTGATCTAGCCCTTGCCTACCTGTGGACCTCAGCTTC------------------------CCTTCTCCGGCACACACTCCTACTCCACCAAGACCAGTCCCCTGGCAGGCCCGCACACACCATGCTCAGGATGGCCTCTGGCCATGTCCCCATACCACCCCAAGTCCCTCTGGCACGCACCCCCTTCCTCCTGATGCTTCAGGGCCTGCCTTGCCCAGCCAGCTGCGGAGCagaggttaggtggagggattctgcagcctgactactaggggtcaaacccaggctatgcccttcatgggctgggttactgagaagcatcttcacttgctgggacttcagtGAAAGCTGTCTGCAACAGGAGGCTGTAGGGTGGCTGCCCCACAGGACTCATAAGACAAGCAGGTGCAGTGT-TGGCACTCAGTGAGGGCTT---ACTGACAGCTCTGCAGGTCT--GTTCTTACCTCCTCT-GACTCCCCCTTCTTGGAATTCCTGCTGCTCTGAGTCTGGACTCATTTCCATTCTGCCTCATACCTACATTCCTTATGCCAGCTTCATGCCTTGTCCCCACCTCCGTATCACGTAAATTCTCACGACAGACTATTCCATGACTTCTTCTATAGCCCCACCTCCACTC--CAACTGTCAGTGGAAGGCGATGCC--TTCTACAGAGAGGAGCATAATTAATATATAATGGTCTTCAAATGCCTCATTGACTCCAGCTATTGGCATCCCACGCCCATCCTGATCC-AGTGCCTAGGCCCTCATCCCCTCCACGT------------TCCTGTCACCTTTTCACCCATGAGCCCCGGTGGGCCAGGGTCTCCAGTGGGTCCAGTACGCCCCTTCGGCCCCTCAGGTCCATCTTCGCCCCTGGAACCAGGAACTCCAACCTCTCCCTGGGTAAGAAGGTTGAAGAGGTG----TCAGGGACTGGTGGCATTGGCTGGGCCCCAAGAGGAGAGGTGGGCCTCGGTGAGGCTGAGTAGGG---------TCCCAGAAACTACTGCAGGACAGGAAGCCCCACAGGAACAGGAAGAGTGTTGTGACTATTGGGTTGGTGAGATGAAGGCTGCAGGG-----------------TCAGGCTCTAAGAGGAGAAGAGCACGGGAGATGGGGAGTCTGGGGTTTTGGGA-ACTAGGCTGGTAATTGGGGGCTCCAATATGGAGGAACATCAGGACTTAGCATTGGGGGCCATGTGTGGGTTTCTACTCACCCTGTCACCTTTCACACCCATGTCCCCTTTGAACCCGGGAAAGCCATCCTCGCCCTGAGAAAGACAGGGATGAGAAGTCACCAGAGATGATAGGGGGCAGTCAGGAGATAAAATGGAGCATTTCAGAAAACATGGGTGGAAGGGTAGATTTCAAAGCTGGAGAGCAGTGCAGGGCAGGCTGGATGGAAGGAAGTGGGGGGAAGAGCTGGGCAGAAGAGGTGATGGGGCAGGATGGAGGTGCTGGGTAGCTGGGGGCACATCACTCACCTTTTCACCCTTATGACCCTTTAGACCACGAATTCCATCCACACCCTAGAGTTACAAGGGAGACAGAGAGAGA--GATT-GAGGACGGAGGTTAGGTTGGAAGGATCGAGCTCCTGAGATCCCAGCTGGCTGCCCCGAC-ATAGTCCTTTATCTCCCAGCCTAGTTGTCCATTACCTTAACGCCTCGAGGTCCTGGGTATCCTAGAGGACCCTGAGGTCCAGATGGACCCTGGAAGAAGAAAGAAAGGTATCTAAAAAGGGG----------------TGGAACCCTCAAGGGGTGGAAGAAACAGTAGAGACAACCTCGGAGTCTGGATA-------------------CCTAGAATACTTCAGAGCCACATGAATGATAAAACAAGGAAATTCCAAGGACTTTGAGGCCCTAGAGTCTGGGTGGAAACTCCCTCAGGGGTGAAAGCAGGTATGGAAGATCTCACCTGGTTTCCTTTGGTTCCAGGGGGACCTTCCTTCCCAGGGTGACCCTGGGGATAGGGAAAGGAGAATGTGACCACTGGCCACTGTCACCTTCCCTGCATGCCTCCCTTTACTTCTTT-AACCCAACTTCTCCTTGTGACCCTGATGAAGCCAACTGACCACGGGCAGGCACCACCAGTGGACCCCCCAGTGTGAAGGACACACTGCATAGATGGTCACCAAAGACATCTGGAGGTCATTCACTGGGGTGGAGAGTCAAGTTGAATTTGGATTAAGAGGTGGGCACCTACTCACCGGAGGTCCATCTGAGCCAGGCATGCCAGGGAGCCCTGGTTTCCCTCGAGGACCCTGCAGGAAGACAAGGAGGCTCAGGGTCACAGGAAGGATCAGATCAGACCATGGCTGAAGTCCTAGCCATACATTTAAGGCTCTTCCTACATCCCTCCAGCACATGCCCTGTCCCTCAAATCACTTAGTCACTTACTTTCTCTCCATGAGGGCCAATGGCACCCTGGGGGCCGGGAAGACCCTACAGGGACagagagagagagagagagagGTTACAGGAGCCTCACAGGGGTGGGCTGCTCTCTCCCATAGCCAACATCCCCG-TTCAGGGCATGAGTGGTG-GGGCTTGAGACCCTTAATTTCCA-------TCCAAGGTCTGACCCACTGGGGAAGCCCGG--------------ATGGGGACAGGTTGCACAGG-ATGGCTCACCTGGGTTCCAGGAGTGCCCTGTTGTCCAGGAGGTCCTGGCTCTCCCTGGGGTCCCTAAAAACAAGCAACCAGGTAGAGGTCAAAAGAAGATGGGGACAGAACAAACTTAGGGTAGAGACCTGAGTCCCAACAGGGACAGC-AGGAGGGCAAGAACCAGAAGCAGGTGGCGGGAGGGTGGGGGGGTGGGGGTTGTCAAAATGATCACCAAGGAAACA-------GGACCTTGG----CTAACATTCAGGTGGTGCCTCTGTGCCCATTACTCACCAAGCTCCCTTTGGGACCATGGGGACCATCCATGCCTCGGACTCCCTGAAACAGGAGAGGGGCATGAGCAGGCTGGAAGATGGGGCCAGGGCCCTGGGCAGACCTGTGGTTTCTGAGAGACCCGGTCATTCCAGAGGGTGGGACGGGGCAGCCTTACATTGGTCAGACCTCCAGATCATCCCAAAGCTAAGCAAACACAGCCAGCCCAGATCTACAGGGCGTAGGTCTATGGGTCTGTGGGTTTGTGGGGTTTTGTTTTGTTTTTCTGCAAAAAAT a score=176208 s hg19.chr6_ssto_hap7 4625879 3511 + 4928567 CACCACGCCACATGGCCCTCCCTGTGCAC-GGGGAGCGAATGCTGAGGCAGGGCAGTGTGGGGCCAGAGCAGGGGGAGCTCACAGGGAATGGGAAGCATGCCGAGAGAGGAGAGGGAGCAGGAAGGCAGCTAGAAAGG-TGGAGAGTTGGAGAGGTCAAGGGGTCACCTCAGGGTCAGAAGTCAGGGA--GTCACTTACAGGGGGTCCAGGAATACCAGGTGGGCCTTTGGGGCCAAGGAGACCTCGAGGTCCCTGCATTCACGGTGAGGGGAGGAGACGGCATGAATGGATAAAA----CTGTGTCCCTTTAGTGCTCATGTCCCCCTCCTGGC-TTCCCCAGAGCCCCCTCCCCCAGCACCAGCCCTTGGACACTCACCGACTCTCCAGGCAGCCCTCGAGGCCCAATCTCCCCGTCATCTCCCTGGAGGAGGAGGACACGGTAAAGCTGCTGTGCCTTCTAGACCTCCCCTGCACCCAGCCCCTACATTTGCCACTACACTTACCCTCTCTCCATCCTCACCAGGGGGACCAGGAAGGCCCTGGGCACCAGTATCACCCTGCAAAATGGGGGAACTCATAAGAGGGGCTTCAGAGCCCCCAACACAGGCAGACACCGAACCTCTGCACTTAGCCCATCCATTACTTTCACTGAGCTCCTGC---CAAGCCTCCAGCCTCCCTTCCCTACCT----ATCCTCACTCC---------CATAGAAGATCTATCCCC-----AATTACAACACACACCCACTAATGTACTCACCCTATGGCCCTTCTCTCCAGGGAGCCCTGGGAGTCCATCAAAACCTCGGTCACCCTAGGAGGAGGAAGGATAGCCAGAGTGAGGACAC-GACCCTGTCCAAGCCCACCCCTCCCTACTGCACCCTGAGCTGGGGGGGTGCTGATCCTGGGGAAGCCTGGAGAACTAGGTCATCCCCAAGAAACAACTGAGCCCAGCGTGGGCTGAAGGCTACAGGCTTCAGGGAGGGGCCCAAGCCTGTTACCTTCACTCCAGGATCTCCAGGCATCCCTCGGGCTCCATCAGCACCTGCCCGGCCCTGGGAGAACAAGGGAAGTGTCAGAACAAGCAGGGCCGCAGTCCCCTACCCTGCAGGCCCTGTCTCCCCACAACACCCATC-CACCCCTGGGGCACTCACCCTTCGCCCAGCCTTGCCAGGAGGGCCTGTGAGGCCCTGAGGTCCTCTGGGGCCCTGGTGAGAGGAGAGATGGGGTGGGGTTAGGAGGCATAGGGAGGGGAGTGAGGGAGACTGAGCTGGTGAACAGATATGGGGGTGCAGTGGAGGAAAGTGGTCACCTGAGGTCCTAAGTCTCCAGACTCTCCTTTCAGGCCAGGGCTCCCAGGTTGGCCCTGGGAGAGAGAAGAGAGGATGGCCGTAAGGAAGGACACAGCCAACAGTGGCCTCGGAGTGTTCCCCAAAAGAAGC--------------------CCCTTTCCAGAACTATCCACACCC-CACACACAATTAAAGCATCCTCCACCCGAGCACCCTGCTCACTCACCAAGGGTCCAGGGCGCCCTGTGTATCCCATGGGGCCAGGGGGTCCACGGAGCGCCAGCTAGGGGAGCAGGGGG-ACAGCAGAGCTGAGGGACAGGCAGTGGGA--ACCCCCAGCCCCAG--CACTCTCCAAATTCACCCTTCCTCTCCTGATCCTCA-TCCACTGCCCAGGATTCTCCCCAACCTCCCTGTTAACCCCAAACCAACCCAGGCCTC-CCCTGCCGCACACTCACTCCAGCCAACCCTTCCAG--------------------TGCCCCCCAGAGCCTTCCCTTTCCAGGGAAGC-----AGCCCCACTCACCCTCGCCTGCTGCAGGATCGCCTGGGCCTGAGCCTCCTGGGCCGCCACCACAGGGCCCTTGTCACCCCCACCACTGCCAAACCGGAACTGAGGG----CAAGGAGAGAAGGTCCAGGTTCTCTTCCAAGAAAGCCATGGGACCCTCCCAGCCAGAGGCTTTCTCCAGCGTTTCTGCCCCTTGCCCCAGGTTCTG--------CCCATCCAGCAT------------TTCCCATGGC---TTCCAGATAATCACTTAGAGGATTCCAGAAACTCAACTCCTGCCCTCCTCCACTG---TCCAGCCTCTGCCTCCAGAAAGACTCTCTTTTGGTTCTAGAGCTCCTGAAATATAGGCTGTTCTGCCCAGTCCTAGAAGACTGGTGTTTTGTTCTAGGTCACCTAATGAGGCCCCATCTCCCCAACCCCAAAGACGAATCCCTTTGGAGTGATGATCTTTGATGATCTTTAGAGACTCCTCCATATCTTTCCTGCCCATCTGGTTCTTGGTAACATGACACAATTC-CTTGTCTTCCCCATCAGCATGTTCCAAAACCCAAGAGACAACTCACTGGGAGCATGAGAGATGTGCCAGGAGGACCAGGAGCCCCATCTGATCCAGGGAGCCCTGCTCGGCCAGGGGGGCCCTGGAGTGGGAAGAGAATGCAAAAGATGGGGTGAAAGATAAGGGGACATCAAGATCTTAGCATGATTTTGAAATATCCTCTTCAACAGAATAAGTGTAGATTGCTCTAGCTCTTTCCTGAGTCTCCCACCC---CCATGGGGAAAATTGAGGGTGAGAAACCAGATCAGCACCCTCCCCAACCAGAG----TCTGCCCTCCTTTCTGGTTGCTGGGAAGCACAACCATCCCCTCATTCATTAACAAGCCACCTAACAGGAAATTACTGGGCATGGTAGCCCCCCGCTTGGATACCACTAGCTCCCCCGAAGCTC----------------CCCCGTCACATGGAGGACACCCCCTTACCCTCTCTCCAGGGTCTCCAACTGGGCCTGGGTTCCCCTGGATGCCAGGGGGACCAATCAATCCCTGAGGAACAAAAGAGTAG-GGGTCAGGTGTGGGCATTCAGACAGGTGTGGACACTCAGCCTGTGGCTGAGGAGTGGTCTGTGCAGAACAGATCTGGGAATCTGGGAAGCGTTGATTGGAGGGATGCTCCCGAGTTCTGAGGAGGAGGCCTGGGCATATGTGGGG-AAGGCTCAGATGAGCACATAGAAGGGGTTTCTAAGAAAAGAATGGCCACCAGGTCACTGCTAGACTTACCGCAGGGCCTTCTGGGCCAGGGGGCCCCTCCACGAGCATACCCTGTGGAGTCAAAGGTTAAAAATCAGAGGCGACAGGACCAGCACACTCAACCCCACTTGCTTCTCCTATTTCCACTGCCTCAGCCCTGTGACCAGCA-TAACTTACAGGTTCCAACACTGCAGGCTCTCCTTTCTCTCCCTTCAGCCCTCGGGGTCCATGGGCAGCCTGAAGGAGACACACATGTAGCCCCCAGTGGGGCCCGTGAGCAGCCAGGACACTAGGCCTTTCTCCATCTCAACTCCAACCTTG----ATTCTTAGATCCTCTCGAGACCACTTCAGCCCTACCCG-AAAGCCCCACAGCCCTCCCCTAAAACTCCCTCTTCACAAACCTTTCAAGCCTGCCAAGG-----------------AGACCTCAGGGTTCCCTGCCCCCCAGTTCCCAGCCCCACCTCAGCAAACACAACCTCTCCATCTCCCTGAGAGCCTCTTTCAGGAAGGTCCCCAGA s canFam2.chr12 5645721 3538 + 75515492 CACTGTATCATATGACCCTAGAAGGGCACCTGGGCTTATATGCTGGAGCAGAGCTAGGTTGGGGCAGGGT-GGGGGACCT-------------------------GGAGGTGAGGGA--AGAGAGGCAGCTAGGAAGGGTGGAGTGTTGGAAAGGTCAGGGGGTGAGGCCAGGGTCAGGAGTCAAGGATAGTCACATACCGGGGGTCCAGGAATACCAGGTGGGCCTTTGGGGCCCAGGAGACCTCGAGGTCCCTGCAATAA-GGTGAGGGAAAGATATGGTATGTGTGGGAAAGAGATAATGGGTCCCTCCTGTGTCCATACCCCTCCCCTGGCAGCCCCCAGAGCCAAC---CCCAACCCAACCCCCT-----CTCACCGACTCTCCAGGCAGTCCCCGAGGCCCAATCTCCCCATCATCTCCCTGGAGGAGGAGGACATAGTAAATCAGCTTCACCCTCCACACTTCTCCCATACCAAGCCCCTGTCCTGGCCACAATACTTACCCGCTCTCCATCCTCACCGGGTGGGCCAGGAAGGCCCTGGGCACCAGTATCACCCTGGAAAATGGGGGACTAGGTAAGAGGGACCCCAGAGCCCCCAGTACAGCCAGACACTGACCCTCTTAAATTAACCAACCAGTTTCATCCATTAAGCTCCTGCTGGCATGCT--CAGCCTCCTTCCCTCACCTTGAGATCCCTCCTCCACACCACTCCATAGAAAGTTCACCCCCTCATCACTCACAATGCATTACCCCCAAGATACTCACCCTGTGTCCCTTCTCTCCAGGTAGCCCTGGGAGTCCATCAAAACCTCGGTCACCCTAGG-GAAAGAGGGGCAGGCCTAATGAGGTCCCAGCCCCTTTCCCACTCCATCCACCCCTACTGTGTCCTGCA-TGGAGAGGTGCCACTTCATGGGAAACCTTG--------GTCACCCCAAAAAAACAAATAAGCTTAGATGGGGCTGGAAGTCACAGGCATCAGAAAGGGACCCATGCCTGGTACCTTCACTCCAGGCTCTCCAGGCATTCCTCGGGCTCCATCAGCACCTGCTCGGCCCTAGGGATGCAAAGCAAGGCTCAGAGCAAACAGAGGCACAGTCCCCCACACCCCGATCCCTGTCTCCTACCGACACCCACCACACCCC------ACTCACCCTTCGCCCAGCCTTGCCAGGAGGGCCTGTGAGGCCTTGAGGTCCTCTGGGGCCCTGGGGAGGGAGAGTCAGGAGCAGGGTTAAAGAGCAT-----GGACCAAAAGGGAGGC----------ACTGGATGGGGGAATCAGATGGGTGGGACTTGTCACCTGAGGTCCTAGGTCTCCAGATTCTCCCTTCAGGCCAGGGCTCCCAGGTTGTCCCTGGGACAGAGAAGAGAGGTTGGCTAAGTTGAAGGACACACCCAACAAGGACTTCAAAGCCCTCCCCAAAAGTAGCAAAATAACTTTCAACCTGGTCCCTTTCCAGAACTGTCCATACCCACACACACAAATAAAGAACTCCCTATCCCAATACCCAACTCACTCACCAAGGGTCCAGGGCGGCCTGTGTATCCCATGGGGCCAGGGGGTCCCCGGAGCGCCAGCTACGGGAGCAGGGGACACAGTACAGCTGAGGAAGAGGCAGCAGGAGAACTCCCTACGCCAGTACACCCTCCAAATTCACCCCTCCACTCCTAATCCTCACTTTACGGTCTTGGATTCTCCCCAACCTCCCTCTCAGCTCCAAATCAACCCAGACCTTACCCTGCCCCACATTTACTCCAACCTACCCTTCCAACCCCTCCTAAAGTCTTCACTTGCTCTCCATATCCCTCCCTTCACCAAGATCCCTTCTAGACTTACTCACCCGTGCCTGCTGCAGAATCGCCTGGGCCTGAGCCTCCTGGGCTGCCACCACAGGACCCTTGTCACCCCCACCACTGCCAAACCGGAACTGAGGGGTAGAGAGAAAGAAAGGTCCAGATTCTCTTCCAGGAAACCCATGTGACCCTCCCAGCCCAAGGCTTCATCCAACACTTCTGCCCCATCTCCCAGGTTCAGGGACACCTCCCACCCCATACCCTCCTCGAGTGTCTCCATGGAAGGTTTTAGAGAATCATGCAGCAGTTTTCAGAAACTCTACTCCTGTCTTCCTCCCCCGCTCTCTGGCTTCTTCCTCTAGAAAAACTGTCCTTTGGTTCTAGAGTCCCTGAAACATAGGATTTTCTGCCCAGTTCTAGATGATCCATGTTTTGTTCTAGGTCATCTAATGAGGCCTAGTCCATCCAACTC-AAAGATCAATTTCTTTGTG----------TTGATGTTCTTTAGAGATTCCTCCTTAG-TTTCCTGGTCTCCTGGTTTTTGGTGATAGAACACAGTTCTCCTGCTGTTCCCAC--------TCCAAACCCCAGAAGACAACTCACTGGGAGCATAAGAGATGTGCCAGGAGGGCCAGGTGCCCCATCTGATCCAGGGAGTCCTGCCCGGCCAGGGGGGCCCTGGAATAGGGAGAAAATGAACA----TAGGTGAGAGTTA-GGGAATGTTAGGGTCCTGGCATCATTAT--AAGAGCCTCTT--ACAGAATAAATATAGACTTATTTACATCTTTCCTAAACCCCACCCCCACCCCATACAGAAAAT-GAGGGCGAGACACCAGATTACTCCCCTCTGTAACCAGAGGTGTTAGGTCCTCCTTTCTGGGTGTTAGGGAGCAC--------CCTTGTTCATTAATCAGCTAGCTAATGAGGAACTGCTGAGCTTGGTA----CCCTGTTGAGTACTAGAGGCTCCACTGAAGTCCTACACAAACACAGAGACACACAGACACAGAGGCTACTCTCTTACCCTCTCGCCAGGGTCTCCAACTGGGCCTGGGTTGCCCTGGATGCCAGGGGGACCAATCAACCCCTGAGGAACAAAAAACAAGTGAGTCAGCTGAGGGCATTCAGATAGAAGAGGG------ATATGTGGCTGCGGGGTCGTCTCTACAAAAGAGATTTGAGGATCTGGGAAGCTTTG----GAAGGATTCTCCAGAGTTCTGAGAAGGAGGCCTGGGTATATGTGGGGGAAGGCATAGGTGAGTGTGTAAGAAGGGTCTCTGAGAAAAG----GCTAATGGGTCACAGCTACACTTACCGCAGGGCCTTCTGGGCCAGGAGGCCCCTCGACTAGCATTCCCTGTAGAGTCAAAGGTTAAAAGTCAGAGACTATAGGGCTAGCAC------CCCCACTTCCTTTTCCTCTTCCCCCTGCCTTTA----GTGACTAACAGTGACTTACAGGCTCCAGCACCGCGGGTTCTCCCTTCTCTCCCTTCAGCCCTCGGGGTCCTCGGGCAGCCTGAAGGAGACACACATGTAACCCCCAGTGGGGCCTGTGAGCAGCCAGGACACCAGGGCTGCCCCCATCCCAACTCCCACCTTCCTTCACTCTCAGATCCTCTGGAGACCTCTCCAACCCTACGTATAAAATCCCCCAGCCCTCCCCTAAGACTCCCTCTTCACAGACCACTCAGGCCTTCCAAGGCCTTCCTGCCCTTCCACAGACCACAGGGCTCTCCACCTCCCAATTCGCAGCCCCATCTTAGCAAATA-AACTTCCTCATATCCTTGTGGACCTCTTTCAGGAAGGTCTTCACA a score=9848 s hg19.chr6_ssto_hap7 4629727 207 + 4928567 CCTTTCAGGGATTTTAAACCACCCA-CCTTCCCAAACCCTCTTCTAGAGGACCCTATCCCATCTCCCAAACTCCCTC--------------CCTAGAACCTTAAGAAAC------CTTCCACACATTTACCCCAATACATCATAAAAGAATCTCTCTAAGATTGTGGGTAGATTTTTATTTGGGGT-AAGAGGAGGGCATGGACCCACATGAGAACCTGATAAAAGCTA s canFam2.chr12 5649260 229 + 75515492 CCTTCCTGGAATCCCAAACCCTTCAACCTTCCCAAACTCTCTTCTGGAGAACTTTACCCTATTCCCCAAACTCCCTCTGAGTCCAGGAATCCTTAGAACTTTAAGAAACTATCAACTTCCTCCACCTTACTGCAAGCCACCAAATAAGCATTTCTCTAAGATTGTGGATTGATTTTTATTGGGGTTTAAAGGGAGGGCATGAATCCATATAAGAATCTGATATAATCCA a score=6764 s hg19.chr6_ssto_hap7 4630245 127 + 4928567 tgagtctttctccagaaatgaaaaagtatatgctattatgcacagaattttatttaggatttcaaagggttcacaAGTTTAAATATGCCCCAAAGGTTAAGCATCCATACTCTAAGTAAATTTGGAg s canFam2.chr12 5649489 120 + 75515492 TGAAGTCTTTTCCAGGAAAGAAAAAGTATATGCCCTTATGCACAGAATTTTTCTTAGAATTTCAAGGGGCTCACAAGTTAAAA-ACTCTCCAGAAGTTAAACATCCATACTGTAAGT------GGAA a score=1897 s hg19.chr6_ssto_hap7 4630666 21 + 4928567 TTGGAGAGCAGTCCCCACTGA s canFam2.chr12 5649609 21 + 75515492 TTGGAGGGCAGTCCCCACTGA a score=67451 s hg19.chr6_ssto_hap7 4630687 1152 + 4928567 ATGCATTGCCCTTCCTCTGGCCCTCAAGTACATTCCAAGCCCA-CCAGTTCCCTCCCTTGCACACCTCCACTCAGATACCTGTTCCCAACTCTAGGGCCAGAAACAAAATAAGAACATGGAGAATGGGAGACATTCACCACCACCC--CAACTCCCCCCAACAAAGATCTTCAGAATGCCCCTCTCCACCTTCATTCTGACCAAACAGCAATGATCCGTTTCAAAATTCTCTGAAATCCCATATCAACCCCAAATACCCAGAGAGCAGCATAAAGGAAAGGCAGTAGAAGCTCAAGGGAGGCAA-----GAGAGGGGAGGTATGGGATGCGGCAGCAGGGTAGAGGAGGCAGCCAGAACTGCAAGGCAGGCAGAAGACGGAGCGGAGTAGACAGGAAGCAGTCCCACTGACAGGGAATACTGGAAGATATGAGAA-CAACTAAGGGACACAGAACAAAATGACAAACACTTGGAAGCAAGAATGATGCCAGGGCCGAAGAAAATTAAACATGGCCAACATGGCTAGAAAACAAACTGGACAAACAGGAAGTGGCTGAACAGACAGGAAGCAGTGAAGGAAAGAGGATCCAGGAAGTGAACCTTCAACAACAACATGGCTACCGTGACCCAGAGAGAAAAGAAAGGCACAAAACAGGTAGAATGTGACTCCTGCAAAGGGAATCATGACAGTGAAGGGTAATTCTTCCAGAAAACACAAACATCAAGGCTAGGACACACAGGAAGTAGCCATGAGAAATATCGAGGCCCACAATGGAAACTTTATGATTTAAATGACCTGAGACATACAGGAAGTGGCTTATTGTCAAAGGAAATTGTCACAAGATAGCATGAAAAACTAGAGCCAGAACAGAAATAATAAATCCTTTGCAGTCCAACCTGACACAGTTACCAAGATGGATGCCACAGCTGGAGAAGGCAGGAAGGGACAGATAATAAGTGGCCTGTAGGTTAAAAAAAGGTGACATAGGAAGTTAGATCGTTTGGTAGAAACATGAACAAAAAATTATTTC-ACCAAGAAGAAATGATAGAGAAACACTGAAAATGGACACAAGGTAGTAGTTTATTGACCAAAAGCTTTATGAAATCCAGCTTCAGTTAGACAGGAAGTGATCAAGAAAGACAGGAAGTGGCTACATATTT s canFam2.chr12 5649731 1149 + 75515492 ACACTACACTCTTCCTCTGGCCCTCATTTATATTCCAAACCCAACCAGTTCTTTCTTTTTCATACTTC---TCAGATGCCCACCCCCAACACTAAGGCCAGAACCAAAATAAGGATGGGAAGAATGGAAATTACTCTCCACCACTCTCCAACTCTCCC-AACAAAGATCTTCAGAATGTCCC-CTCTACCTCCATCCTGACCCAACAGCAATGATGAATTTCCAAACTCCCCCATATCCCAGATCAACCCCAAATTTCCAGAAGGCAGCAAAAGGGAAAGG-AGCATAGAGTCA-GGGTGGCAATATTAGAGAAGGGAAGTGTAGGATGAGGTAGCAGGGTAGAGGAGGCAGCTCTAATTGCAAGGCAAGCAAAAGATGAA-TGGCGTAGGCAGGAAATATTCCAACTGAGATGGAGTGGTTGAAGACATGGGAAACAATTAAGGGAGACATTTCAAAGGGACAAACACTTGGAAGCAAAAATGAGGTCAGGGCCAAGAAAAATTAAACATGGCCAAGAGGGCTAGAAAATGAACTAGACAAACAGGAAGTGGCTGGACAGACAGGAAGCAGCCAAGAAAAGAGGATCCAGGAAGTGGACCTTCAACAACAACATGGCTACCATGACA-AGAGAAAGAAGAAGCTCACAAAACAGACAAAAAGTGACTCCTGGAGAGGGGATTATGACAATGAAAGGCAATTCTTCCAGAAAACACAAACATTTAGGCTAGTACACAGAGGAAATAGCCATGATAAATATCTAGGCCCGTAATGGAAACTTCATGATTTGGATGCCCTGAAACACACAGGAAGTGGCTTATTAGCAAAGGAAATTGTTACAAGACAGCATGAAAAACTAGAGCCAAAACATAAATAA---GTCCCTTTCAGTACAAACTGTCACAGTCACCAAGATGGATGCCATGGCCAAGAAAGACAGGAAAGGACAGACAGGGAGTGGCCTATCAGTTAGAAAACG-TGACATAGGAAGTTAGAATATTTGACAGCAACATGGATAAGAAACTGTTTTTATTAAGAAGAAATGATGGAGACAGATTGACAATGGACAAAAAGTAGGGGCTTATTGACCAAAAGCTTTATGAAATACAGTTTGGTTAAGATAGAAAGTGGCCAAGAAAGACAGGAAGTGGCCATAGGATT a score=410850 s hg19.chr6_ssto_hap7 4631851 7955 + 4928567 TCCCAATTGCCCTGAGCTTCAGAAGTATCCACAA-GAGTCACAAGGTAAGACATTTGGCAAAGGAAGGCAGGTAGTAATCTTTTCAAGCAACATATACATCATATGTGAACAGAAAATGACAAGTCACAGATGGGAAATAGCTCACAGCCAACAGCCAAGGATCGAAACCAACAAGAAGCAATTCTTGTAGCTCCCACTGGTAGTCAAGAATGAAAGAGAAGCTCCTTTCACTTACGGCTCCTGAGTGGGCTGTCTCCGCAGAGAGGGCAGGGCCAAGCTCTGTCTCCTCACGATAATCATCCCCATAGCCATAGGTGTAATCGTAGGGCCCTTCAGGGGGGTCTGTGCCACCCTCCCCATATTCCTCTGCCTGGAACCTGTCGGCTGTGGGGGGGACCTGGAGATCTGTCTGCTCCTTCCCAGGGATGGGGAGGGAGAGGGGTAGATGGGGATGTTAGGGCTGAGAGGAGG-CTTACCCTGGACCCC-AGGGTGTGACAACTTCTAGCCCAAAGGATTCCAAGGTTAATCAGAACTGGATTTTTTCTCCCAAGAATAGCCATGGGAGTGGTTGTATATAAATGGAAGGGCCATCAAAGGCCAAAAATGGGGAGAGATG-TCCAGAAAGTGGGTCCAGTGGGAAGAAGTGGTGGA-------TAAAATGAAGGGTGGCCAGAGGACTGGATGCAGAGT----GGACAGTCCATGGACACAATGACAGACAAAGGAGTCCAG-GAATGACCAAAGAGAT--------------AGGGAAGACAAAAGGTG---ACAACACTGGACAGAAAGTGGCTCCCGGGAACAGAAATAGGACATAGAAAGTAAGACCATTAGACACCAACATGGAGACGAAGTCACTCAGGAATCAAAGAATCATGGAAGGAGGCCTGGATACTGAAGGGAACGGGCTGGACTTAGAGAGTCAAGCAGGCCCATAGTTCTAGAGTGACCCAAAGACAGAGGCCATCGATGGAAATGAGGAAGAACCCTCCGGCCAGAGGAGGGGCTGGTCCATCAAGACGTCATGGGCTGAGGGGAGTGAGTCACAGGTGCCCACTGCCCCCAGATGGGGTGAGGGTGGGGCATAGAGTTACCTCCTCAAGGGGTGGCAAGAGGCTCGACTCCAGGATTTCTTCCTCTTCACCTGGGGTGGGGTCCTGTCCCCAAGGAGAG-AAGGAGAAGAGTAGCACGGGGTGGGAAGGAAGGAGAAAGGTTAGC-AGAAGGGAGGCAAAGCAGCA-CCTGTCCC---CCGAGGGCAGGGTCTGTCT-----GTGCTGGGGGATGGGGGAAATCTCAGATCTTGCAGCCCCTTTGGA-GGGGGATAGTTTGGGGAGAGTGAACCTCCAAGGTCATAGAGGTTTGGGGGCAGAGATCTGGATGCCCCGGCTCTACCTGCCGGTAACTGCTGCCTCTGGTCCTGGGGCGGGGCCAGGCAGTGGGG-GAAGCTGCCCTCCGAGCTGGGCATCGGGAAAGGGGAGGCTGCTCCCATGCTGGGTCAAAGCCTGCAGTTGGAGAGGGCCTCCGGCCTGGTGAGGGGGACGCCTGCCAGGTCATTGACCTCTTGGCAGGTGGGGTAGGCTTTCAGGGAGGGGTCCGATGCCCCCTAGGGGAAGGGGGAGGCCTGTGGTGGGGGCTCCCAGGGCGCTGCAGCAGAGAGACA-GGGAGGGGGCAGGAACTAAGTAAATCCCCATAATCTAAACACACTGTGCCTCTCCCCACGGCATG-GGGGAGGGGAGGAAGGTGTCCTAGGAGATGATTGCTGGGGGTGCTGGGAGAAAGGGAAGAAATGAAGGGGTCCCTTGAGTTTACCTGATAATCAGGGGTTGTCCCCGTAGTCATCACATCATAATAGGGGGGCTTGTAGTCATAGTAGAGAGACTCAGTGGGCTGGGATTGGGGGGTGGGCATAGACAggaaggggatggggtaattggaaggtgtggg---gtgaagggcgggagagggagatataaagatggtgtgggagttgggaaacgggggaggtgtggagttgggaaacagagagttgaagatgaaaggagaggttgagggtcaggagggaggtggggagaggtggaacagagggaaggggTTCCACATGTGGGGCAGAAGCAGACATGATTAAGAGATTGACCCTCTGATCTTTAGACCACTGACCCCAGAGCCTATCTGT-ATTCTAACTCTCCAGACCCCATCCAACCCAGGCtcccttcccttcccttcccttcccttcccCCTACTACCTCCCCTTTTCCTGCCCCTCCAGGTAGGTGGGGGCCAGAGACTGGGTTCCCCACTCCCACACTTCTGCAGACCCACCCCTCCTTTGATATTCCCTCCATC-CCTACTCCTTCCCATTCCTCCTCCTTGGTCTCACCATCCCGACTGCTTTCTCCTGGCTTCAGTCCCCTCTCCTACCTGCCTCCCCAGCTCTCACCCCTCTCCCACTGTCTCCCAATCTCTTAATTC-AAAGAAGGAAGGGAAAACCCAGGGACACAGTTCCAG-GAAGACTGGAAGAGG-----AGACGCAGAGCAGGGAACACAGCTCCCAGCCACAAATTC-TTCATAACAACTCTTTTTATTTTTAGATGAAAATAAAAAGGCTGATGAATGAGGACTAGGAGGAGGG--GGTGATGGGAATAGGGAGA-------------------TGAGGGTGGGGAGGACA--------------ACTAAGGA--------------------------GGAGAGATGCCTGGGTGTCTTCCCTCTCTGGGGTGTGCTGCACTTGGGGGTTCTCCCAGCTCCCTCACCTGGCTCTGGGGTTCCTGATTTTGTGGCCTGTGAAGTCTTGATGGTTGCTGCTGTGGAGATCTCTGGGCTCTGTGAGGCTGTTGGTTTTGGGGTCTTTCCCTCTGGCCCCCCTCGCATTCCAGCTCCTTCTGTTCACATGATTCATAGGCTGCCTGGACCCCTGGGACAATGGCCAGCTCCTGGACATCACCCTGCAAAGACATGAGAGAG--------ATGGAGCG-------GAGAGATTCAGAGAGAGGCAGAGGGTATCATCCGGGAGAAAGAGTATAGGAGGCCAATCCTAGGTAAAACCCTAAGATGGGAGAAGGTCACTGTCAGTcct-ccatatgcatagcccttttcagttttcaagg---------------gatctcataggaccttcataacaaccaggaaagttggcagaacaaggatctttctttctacccatttttcagatacgttccattcagaaaagcccaaaaaggcaatgactgccccaaggtcacccagagtggcagaatcaggaccag----------atcccaggcct---tccagaattcTTTGCCTCCCCTCTGCGCTTTGTGGCAATGCATGAGCCCTTCCACAGTGGCTTCCAGAGACAG-GGCTCAGCTTTAGATGCCTTGGCCTTCCAATGGCAGTGATGATGAGAATTCTCTGGACCTCTAGAAATGGAGTGGGGAGAACCCATTCCTGAGTTCCAATGGCATTTACTTTTGCCCACACATGGTGCTTAGCATACTCTCCATTGCACCGTAATTTAGGGATGTTGTCTCATTTCCAGAGCCCACCTGGGAGCTCTTGGGGGTGATAGAGACTTTATATT-CTCTTCTTTGTTCTC--------CTTGTCCAGCAGGTATTCAGAAAATGTTGACTGGCTTGGAgggtgaatggagggatgggtgaatggagggatggatgaatggatagatgagtggatgggtggctgggggcttacatgcattaatgaatgggagcattgataaatagtgaatgaataaatgtacgtatgggagggtggactggtgggcagatgaacaggggttacagagtagatggaagcaaatgggtgaataggtagatgggtgaacttatgtgggtgaatgactggtcggatggGAAGTAAGTGGGTCAGGAGAtgggtgagtgagtatattgaaggagggagtggttgagttggtggaaggataatggatagatggtggctgaatggatgcatgcatccttgtgtgcatgggtagatggggagggtgggtgggtgagtgaatagctggatggaggagttgaaga-ggatagatgggtggaagcatagatgggtggTTTGAAGGGGAGAGTGGTTAAGCAGGGGGAGGATTGACAGGTGGGTGGATATAAGCCTTCATGCATGACtaggtgggcgtgtgatgcatagatgagtaaatagatgggggagtgggtggtggatgtgtgcataggttggctgaggagtgagtgaattgatgggtgggtgaggagagagagg--ggttgaaaggatggatggatgagGGAACTGATGAAGACTGAAGGACAGAGTAAGTGGCTGTGGACAGTCCTGCCATATAGGTAGGCATCTAGTTCTCCTGCAGAGAACAGTAGCCCTGAAGATAGAAAATAGAAATGAAAATTCATAAGAAAAAAAAATGAAGGCCTAGGGAATAGGAAGATGACATGCTGGGGCCAGAAGGGTAGTGGGCACAAGATAGGGGACCAGAAGTCAATCCTGCCTCTGATTGCTCTGGTTACCTCAAAGACTTCTTCATCCAGAATACGGGCACCAAAGATGATCACTCCATGGGTGTCCAATACTGGACGAGCACTTCGGGGGAGAGGCCGGGTGACTCGCTTCTTGCAGTCAACAATGAGGGTGACAGACTGGCCCTTCACAGCCACAGCCACACGGTGCCACCTGGAAAT--------GGTGGAAGAGGTTCAAGTGAACTCTTGGCTGACTGAAGTAGGGGAGTCAACATGGTTGGAGAGCAG-----TGAT--AAGAGTTGAAGCCAATGGTGATAAGAGCAGTaataacaatggctaccatttattgagtgtttacagtgcaccagacaccatgccgtcactttcttatttgtgcc----aattctatttaatgtctattttacagatgtagaaactgaggctcaaaaattttaagtaacttgcccaaggtacaggctagtTCAACATGCAGAGAAGGCTGTACACTCTAAAGCCCAAACTCTGGACTAGAAGTGACTGAAGTTTGGGCAGTGGGTAGGTGTGGTGTGGCCCAAAGGGTCTCAAGGGTTTCACAGTTTAGAGTGTAGGGGTTTGGGGGCACTT-----------CCTCCTGAAAGTGTGGGCCAGGCAGACCAGAGGAGCAAACAAACTTACTTGCCATCTGCTAGGCTGAGGCCTCGGAAGACTGGCTGAGAGGGAGGTTGAGGCCGCCCAGTCTGGTCTTCATACAGGAAGCGGACAGGTCGGCCCAGCTCCAGGCCCAGCTGTCGGACACCCTGGGCACTGTAGAGAGTCAGGAGGGGAGCTTGGAGACCAGGGCGGGTCCGGACAACAGTCAGCAGAGAGAAATCTTTGGGAAATCCTCCTAGTAACCGAGAGAGATACACACAG----AGTGAGAGGCAAAGGGAGCCGCCACAACCCCTTTCCTCCTGGTGTCTGATCCTAGGCCCCATCCCATTACCTCCCCCCAG----GCCTACCCCACCATGTCACCCATACCTGGGAAAAGCTGGCGAGTGGGTGCACTGAGCTGGGCAGGTCGTGCCACTCGGTAGGCCACATCAGCTGGACAGATGCCTTTCGCTCTCCGGACACCATCAGGGAGGGAGGGGAACCTCAGGGCCCGGAGCACATCCACAGGGGGTGCACCTGGGAGAGTCCATGATTATCAGGAGAAGGGACATGCCCTCAGGAGGGCATAAATA-GGGGACATTTGGGATCTAGAACTCAGCTTTCCAGGGCTCAAACTCCCTGCAAGGGAAAGGTCACCTCACCCTC-ACTTGCTTCTGAACAGTACCTGAATGGATGGGAAATGCAAAGGTACCTGGAGGCAGGGCAGCATCAGCTG-GCATTCAACCCCATGACACTCCTGCCCCTGTCTCTCCTAGCATCTGCCTCTCTTACGCTCTC----TCTTTGTCTTTTAGCTTATGAATCTGTCTCTCTCTGTACTCTCTGAATACTTCTCTCAACTCTTCATCTGTCTCCTGtctctctcactctcttactctctctgtctctttatgttggtctttctgtctctgtctcttctgtcttcctccatttctctcacattctgt-------ccatctttttctctccctcgctctcactctctttccatatctctcactctctGGGTCTCTGGCATCTGTCCCG--TCTCCAGCACAAACAACATCTGGGCAATCGATCATCCTGGACACAGGAGGTGCAGGGGGGCCACGAGGAAGAGATCAGAGAAGCAGCTCTATGAGA--GGGGCTTCAAGCAGCTACAGATCCCAGGTTTGGGGGATGGGGTGGGAACAACCCTGAGCATGCTGAGGAAAAAGATACAAGAA--AGCTCTCCCAGGAGTCTGTGCCTCCTGGTTTAGGAGATGAGTTGGGGAGGGGTGGAGGAATGGGGGGCAGGGGCTGAAGCTGCCACGAGGATCCGGAACAGGTCCAGGGCCCTGAGCCACACATCTGTGGATCCCATCAGAGTGCTTGCCCAGAACCCAGGCAAGCTCCCCACACCTGGAACCTCAATCCTGTCTCACCACCCCCACCAACCCCACCACCTGGGACCCAAAGATTCAAGATCCAGCCCACCAGCCCTGTCTACCTAGAACTCAGCTTCCTAGGGCTCAAACTCCCTGGAAAACAAAAGATCACCTTGCCCTCACTTGCTCCCCTATACACATACTCTTCACACCATCAGCTCCAGATTGGAAAAATCCCAAAGAGAGTTCCAGCAAAACTTTCATAGAAGTGTG----GGGCAGGGCAGAGGCCAGAGCAATCAGGAGAGTGGAGCTGGGTGGGGTGGGTGAGGTGGGGCGGGCAGGCAGAGAAAAGGCCCTTTGAGTCCAGGAGCCGGGAAACCACGGCCTTCCCCCC----------CAACCCC----CACCTAAGCCTGGCCCCTGCGCGTGTGGCAGCTCCGCAAACACCAACACACAAGGGCCGCTTTGAGAGACGAAGGGTGAGTGAGACAGAGACACAGAGACTCACAGAGACCCCAGGCCAAGGAGACCTCGGAGGTCCCCACCCTCCACCAAATCCCAAGGGAGTACAATTCGATCATATGGACAACCTACCCACAGGTCCGCCCA-CCATCTTCCCACACCAGGCCACATACTTGCCCCC-CTGTATCCAGCCTC-ATCTGCCCCACAGGCTCTCCACTGGTAGCCCCATTACCCTCCACCACTCTACCTCTGGCCCCCCAAATGCCTTATTCTCTAACCTTAGGAATTCTACAGTAACTCATTTCCC--TAAAGTCCCATCTCTACCCACTCAGCCCCTGAAATAAGAAACAGTCATCTTAGCCATCCCCCTGCCTCCATGCCAGAGG-------ATCCCTCTTCCCCCTAAGAAAGACTCCTAGAGTCTACAGGcaccatacgcctcaatttcctggccctgggcttcactgtcctcacatcttggaagttcttccttctgtaatctaatctaaatcttttgtgctgccattctgaccattttctctctaaagcagagaaGAATTGAATAGTCAAGTTAAATATAAATCAGCCCTCAGTGTCTCCAGAAATGGGCTTTTTCCAGCCTGCTGAGGACCT-GGTGCTCACAGCCCCCTCCTT--GACATCAAATCCCCTTTCCTAGAAGCCAGGAATTCTGGGTCCTG-GGAAAAAGAAGGAAAAGATCAGGGTTGTGGGCACCAGGGTCCCAGGGGAGCCTGGCTGGCCAGAGGGAGGAGGGGCTAGGCAGGAATGCAAAGAGTTGGCTCTGGCCTCAGACACCTGATCCTGGCCTGTCCGGAGGGCCGTCCTGTTGGCAGCCAGCCCCAGTGCTCCCCAGAGCCAGCTGCGTGGCAGCATCGAGGGCACAGGGAGGGGGAGGGGGACCCTGTCCAGGAGGCCAATGAGACAGGTAGTCAAGGCTTCCTTTCTTTCTGGGCTTACTGGGCTCTGCTCTGAATCACAGGTGCTCACCCCTTATC-CCAGAGATATCGACAGAAAGGCCATAAGACACACACG--CCTCACCCATCAACATTGGCGTCTACCATCCCCACACCAGCAATGACTGGACCGGGCTGGCCCTGGCC s canFam2.chr12 5650896 7764 + 75515492 TCCCAACTGCCCTGGGC---AGAGGGATCCACAAAGTGATACAGGGCAAGATATTTGGCGAGGGAAAGCAGGAAGTTATCCTTTTAAGCAACATATACATCTTACATGAACAGAAAATGGCAAGTCATCAATGGGAAGTAGCTTGCAGCCAACAGACATTAATCAGAAACAACAGGAAGCAATTCTTACGGCTCCCACTGGAGATCAAGAATGGAAGAGGAGCTCCTTTCACTTACGGCTCCCAAGGGGGCTGTCTCTGCAGACAAGGCAGGGCCAAGCTCCGTCTCCTCACGATAATCATCCCCATAGCCATAGGTGTAATCGTAGGGCCCTGCTGGGGGGTCTGTGCCACCCTCCCCATATTCCTCTGTCAGGAACCTGTCGGCTGTGGAGGGGACCTGGAGATCTGTCTGCTCCTTCCCGGGGATGGGGAGGGAGAGGGGTAGATGGGGGCATTAGGGCTGAGAGGAGGTTTTTCCCTGGACCCCGACGGTGTGGCAATTTCTGGCCCAAAGGATTCTGGGGGTAACTGGGACCAGAGATTTTCTCCCAAGAAGATCAAGGGAAGTGGTTGTATAGAAAGGGGAGGGCCATCAAAGGCCTGAAATGAGGAGGGATGCCCCCAAAATTGGGCCTGGAGGGAAGAAATGATGAATTACAAGTAGGAAGAAGGGTGGCCGGAGGGCTGGACACAGAGTAGACAGACAGTCTGCGG----------AGACAAGGGAATCCAGAGAATAATAAAAGAAATGGAGGGAAAAAAACAGAGAAGAAAAAAAGTGATAACAGCACTGGACAGCAGATAACTCCTGGGAAGAAAAATATGATA----------------AAAACACCAACATGGGGAGGAGGTTGTCCCAGAATCAAAGAATAATGGCAGGAGACATGGACACTGAAGAAAAATGGCTGTACTTAGAAAAACAAGCAGACCAATAGGTCTGGAGTGACTAGA------AGGCCACAAATGGAGATGACAAAGAGCCCTCCGGCCAGAGGAAGGGCTGATTCACCAAGATATCATGGGGCAAGGGGGCTGGGTCACAGATGCCCACTGCCCCCAGCTGGGGTGAAGGTGGGGGATGGAGTTACCTCCTCAGGGGATGGCAAGGGACTTGATTCCAGGATTCCTTCCTCTTCACCTGGGGTGGGGTCCTAACCCCAAGGAGAGTGGGGAGAAGAGTAACAT--GGTGGAAAGGAAGGAGAGAGGTTAGCGGGAGGGGAGGCAAAGCAGCATCTTGTCCCCCACCGTGCGCAGTATCTGTCTGTACCGTACCGGGGAGTGGGGGCAATCTCAGATCTTGCAGCCCCTTTGGAGGGGGGACAGTTTGGGGAGAGTAAATCTCC-AGGTCATAGAAGTTAGGGGACACAGATCTGGATGCCCCAGCTCTACCTGCCGGTAACTGCTTCCTCTGGACCTGGGGGGAGCCTGGGCAGTGGGGAGAAGATGCCTGCTAAGCTGGGCATCGGAAGGGGGTAGGCAGGTCCCGTGCTGGGCCAGAACCTCCAATTCTAGAGGACCTCCAGCCTGGTGAGGGGGGCGCCTGCCAGGCTGCTGATCTCTTGGCAGGTGGGGTAGGCTTTCTGGGAGGGGTCCGACACCCCCT-GGGGGAGGGGGAGCCCTGCGGTTGGGGCTTGATGGCCTCTGTAGCAGAGAGACATGGGAAGGCGCAG----TGAGGAAACTCCCATAATCTAAATAAATGATGTCTCTCCCTA---CATGTTAAGAGGGAAGGAAGGTGTCTTAGGAGATCTTTACAAGGGGTGATGGGAGGAAAGGAAGAAATTAAGGGGTCCCTCATGTTTACCTGATAATCAGGGGTCGTCTCTGTAGTCATCACATCGTAATAGGGGGTCTCGTAGTTATAGTAGAAAGACTCAGTGGACTAGGATTTGGGAAAGGGCA---ATGGGAA----------TAGTAggaagaggtaggagtgtaagggtgaggagagggagacaaggggatggtgtgggagtttggaaatagggtag--------------------gagttggggatgaaaggagaggttaggggtcaggagagagaagaggagaggtagaa-agggggggTGGGTCCCACATGTGGGACAGAAGCAGACATGATTAAGAGATTGACCTTCCAAACTTCAGACCACTGATCCCAGATCATATCTGTCACCCTAACCATCTGG---------AACCCAAGC-----------CTCCTCCTTCCCCCTCTCCCCA-----GCCCTTTACCCTGTACCTTCCAATgaat----tccatagaat----------tccacagaattccacagGCCCAGCACTCTTTCAAGATTTTCCCTATCTCCTGCTCCTCCCCATTTCTCCTCCTAAGTCTTACCATTTCATCTTTTCTCCCTTGCTCTGTCTCTCCCATCCT--CTGTCCCTGCATCTTATCCCACACACACAATGCCCCCCAATCTCTTAATTCAAAAAAAGGGATGGGAAACCCAAGGACACAGTTACAGAAAAGACTGGCAGAGGAAAGAAGACAT-GAGCAGGGGACACAGCTCCCAGCCATGGATTCTTTCATAAAGACTCTTTTTATTTTTTATTGAAAATAAAAAGGTTGATGAATGAGGACTGGGAGGAGGAGTGGTGGTTGAAAGAGGGAGGCATGGTTGGAGAGTGGCTCTAATGGAGGGGAGGACAGGAGCCCAAAATAGGATGAGGAGCTCTGAGACATTGGGGGAATTCCCTGGGGAGGTGTCTGGGTGCCTTCCCTCCCTGGAGTGTGCTGTAGTCTAGGGTTCACCCAGCTCCCTCACCTGTTGCTGAGGTTCCTGGTTTTGTGGCCTATGAAGTCTTGATGGCTGCTGCTTTGGAGATCTCTGGGCTCTG---------TGTTTCTGAGGTTTCTCCTTCCAAGCCCCCTCACACTCCAGCTCCTTCTGTTCACAGGATTCATAGGCAGCTTGTACCCCTGGGACAATGACAAGCTCCTGGATGTCACCCTGCAAAGACATGAGGAAGGAACTTCAATGGAAGGAGGCAGAGGGGGGTTCAGAAATAGACAGAGGGTTAAGTCTGGAACAAGGGCTAC---CAGCCCGTCCTAGGTAAAACAACATAATGGGAGAAGATCATTATCAGCCCTCCCATGTACATAGCCCTTTTCAGTTTTCAAAGGACCTTCTCATCCATGATCCCACTGGACCTTCACCACAACTGGGAAAATCAGTAGGGCAAGGATATTTATGCCTA-----TTGTTTGATATATTCCACTCAGGAAAGCCCAAAGAGACAATGACTGGCACAAGGTCACTTGCAATGATGGACTCA-GACTAGAAATTCAAATATTCCAACTCTAAATCCAACATTGTTTGCCTATCCCCGGCCCCTTGTGGTaatgcatgaaactttccacaa-ggcttctgaaaacagtgtcccagccttacttgcttggaccttccaatggcagaaaTGATGAGAATTCTCGGGACCTCTAGAAATGGGGGAGAGGGAAGCCACTTTTGAATTCCAATGCCATTTATCTGTGCCCACATGTGGTGCTTAGCACACCTTGCCATATATTATAGTTTGGAGTTACTGTCTCATCTTCAAAGAGGACCTGGGAGCTCCTGAGGATGACAGAGATCTTACAGTATTCTTCTGTGTTCCCTCTTGAGACTGGGACAGCAAGTATTCAAAGAATATTGACTAGC----------------GAggtgggtggatggatggatggatgagggctcagatg------------------------catgactgactgaatgggagggttagtggatggtgaatgaatga--------atgagagggt----tggtgggtagataaatggagg-tatggagtagagagaa-cagattgataggtaggtagatgggtggaAGTGAATATGtgaatgaatgaatgaatg-------------------aatgaatgaatgaatagatgG--GGAGTGCGtgggtgaatgaggggacgg----------------------atgaatacatgcatcctcatatgcatgggtagatgggctaggtgggtggatgaatgattgaataaatggatgggttaaaggtgaatagactgacg--------gatgag-----tgaagaagaaagtggctgggca-gaggaaaatgggcaaatgggtggatacaaacttgaatgcttgattgg----------------tgggtaagtgcataaatgggtgggtgggttttagatgagtacatg------------------------aatgggtgggtgtagatagagagattagttgaagggataaatggataggtggactgatgaaGACAG------------------------CTGTCCTGCCATAGAAGTGGGTGCCTAATTCTCCTACAGAGAAAGTTAGCCTTGAGGATAGAAAATGGAAATATAAATTCATGAG-AGCTCAAATGAAGGGCCAGAGTATAAGAAGATGGAGAGCTGGGGCCAGAAGGGGAATAGACACAATATATGGGATAAGAAATCACTCTGTTCTC----TGTTCTGGTTACCTCAAACACTTCTTCATCCAGGATACGGGCACCAAAGATAATCACTCCATGGGTGTCCAACAATGGACGAGCACTTCGGGGGAGAGGCCGGGTGACTCGCTTCTTGCAGTCAACTATGAGAGTGACAGACTGGCCCTTCACAGCCACAGCCACACGGTGCCACCTGGTCATGGGGCGGGGGGGGGAGTGGTTCAAG------------TGACTGAGGGGGTGGGCTCAACAGGGCCAGAGAACAGTTAGTTGATGGAGAGGTTGGAGCCAAGGATAACGATAATAGGaatcacagtagctactatttattgaatgtttacaatgcaccaggcaatac-------ttttctcatttgattctcgtgatcctacc--atccctattttatagccatagaaactgaggcttaaaaa----agttaacttgcccaaggcacaggctagtaccacatgc----aaggatctaaactctgaagtccaaaccctaaaCCAACAATGTCTGAACTTTGGGCAGTAGGTAGATGAGGTGTGGCCAAAAGGGTTGGCAGGGTTTCCTAGTGTAGGGACTGGGGGTTCTGGGGCAGTGGCCAGAGGGGAGCTCCCGAAGGGGCAGTGCAGGCAGACCAGAGGAGCAAACTGACTTACTTGCCATCTGCTAGGCTGAGGCCTCGGAAGACTGGCTGAGCTGGGGGTTGAGGCCGTCCAGTCTGGTCCTCATACAGGAAGCGGAAGGGTCGGCCAAGCTCCAGGCCCAGCTGTTGAACACCCTGGGCACTGTAGAGTGTCAGGAGGGGAGCCTGAAGGCCAGGACGGGTCCGGACAGCAGTCAGCAATGAGAAATCTTTGGGAAAACCTCCTGGTACCCGAAAGAAACACAACCAGGTGCAATGAGA-GTAAAAAGAGCCAT--AAAACCCTCCCCTCCTGGTGTCTGATTCTAGACCCCACCCTGTGACCTTGCCCCAGCTCTCTCTATTCCACCATGTCACCCATACCTGGAAAGAGCTGGCGGGTGGGTGCACTGAGCTGGGCAGGTCGGGACACTCGGTAGGCCACATCAGCCGGACAGATGCCTCTGGCCCTCCGGACGCCATCAGGAAGGGAGGGAAACCTCAGGGCCCTGAGCACATCCACAGGGGGTACACCTGGGAAAGTCCATGAGAGTCAGGAAAAGGGACACATCCTCAGGAGGGCCAAGACATGGGGACATTTGGAGTCTGGAACTGAACCTCCTAGGGCTCAAGCTCTCTG-AAGGCAAAGGTCACCTCTCCCTTAACTTGCCTCTGAATGGGCTCTGAGTGGATGGGAATCG-AGAGTCACCTGGAAG-AGGGTGGCACTAGCTGTGTATTCAGCTCCA-------CATGGCCCTCTGCCTCCCAG--TGTGTCTCGCTCAGTCTCTCCCTATCTCTGTCTTTCAACCCATGAATC----------------------------ctctctactctccaccatccccccttctctctca--ctcttcctatctctggatctgtagatc--tctctctctccctgtgtcttctggtttcgtccacctctcttacactctgtgcttttctcttccctgtctttctccctctctcactccctctccata--------tctctGGGTCTCTGGCCTCCTTCCCGTATCTCCAGCAGAAACAACATCTGGGCAATCGATCATCCTGGGCATAGGAGGTGCAGAGGGGCCACCAGGCAGAG--TGGAGAGGCAGATCTATGGGGATGGGGCTTCAAGCTGCTTCAGTTCCTGCATTTGGGGAGT----TGGGGACAACTCTGACCATGCTGAGGAAGGAGATAGCAGAAAGAGCCACCCCAGGAGCCTATACC-CCTGGCTCAGGAGATGGGCTGGG--GGGGCGGGGGCAGAGGGG---AGGACTGAAGCTGCCACGAGGAGCCGGAGCAGGTCCAGGGCCCCAAGCCACACATCTGTGGATCCCATCAGAGTCCTTGCCCAAAA-CCAGGCAAGCTCCCCACACCTGGAACTTCAACCCTGCC---CCCCCCCAACCAAC-------TCTTGGATCCAAAGATTCAAGACCCAGGGTATCTGCCCTATCCACCTAGAATTCAGCTTCCTCAGGCTCAAACTCCCTGGAAGAC-AAAGGTCACCTTTCCCTCTCTTGTTCCTCCATACACACACTCCTCACACCATCAGCTCCAGATTGGAAAAATCCCAGAGAAAG-TCCAGCAAAATTTTCATAGAAGCACAGGGTGGGCAGGGCAGGGGCCAGAGCGATCAGAAGAGTAGGGCTGGGTGGGGTGGGTGAGGTGCAGCGGAGAGGCAGAGAAAAGGCTCTTTGAGTCCAGGAGCTGGGAAACCACGGCCTTGCCCTCCCCTTCACCACCACCCCGCCTCGCCCTAGCCTGGCCCCT--GAGTGTGGCAGCTCCACAAACACCAACACACAAGGGCTGCTTTGAGAGAGGAAGGGTGAGTGAGACAGAG--ACAGAGACTCACAGAGACCCCAGGCCAAAGAGACCTCAGAGCCCCCGCCCCTTCACCAAATCCCACAGGAGTATGGTTCCATCCTATAGACGATCTACCCACAGGTCTGCCCACCCATCTGCCAACCTCAAGCCACATATGTGCCCCCACTGGCTCTGGCCTCAATCTGTCCCACAGGCTCCCCACTGGTAGCCCCATCTCCC-CCATCAGTCTACCTTTGCCCCAT-----------TTTTTTACTCTTATGAATTCCACAGTAGCCCATTTCCCTGTAGAGTCCCATCTCTGGCCACTCAGCCCC-AAAATAAGAG--AATCATCTCAGCCATGCCTA-GCCTCCATGCTAGAGGGTTCCTTGTTCCTTTTCTCCCTAAGAAAGGCTCCAAGAATCCACAGACATCACGCGCTTCAATTTCCTGTCCCTTAGCCTCATGCTCCTTGCATCTTggaagttcttcctcctgtgatctaatctaaatcctttatgctgctattctgaccattttctctCCAGAAGAGAGAAGAAATGAATAGTGGAGTTATACGCAAATCAGCTGGAGGC--------AAATCAGTTAGGTCCTGCCTGCCTAGGACCCAGGCGCTCCCAGCCCCCTCCGTCCAGCATCAAAT-CCCTTACCTAGGTCCCAGGACTTCTGGATCCTGAGAAAAAAGAAGGAAAAGATTGGGG-TGTGGACACCGGGGTCCCAGGGGAGCCCTGCTGGCCAGAGGG-GGAGGGGTGAGGCAGGAATGCAAAGAGTTGGCTCCCGCCTCAGACACCTGATCCCAGCCTGTCCAGC-GGCCGTCCTGTTGGCAGCCAGCCCCAGTGCTCCCCAGAGCCAGCCGCGTGGCAGCATCGAGGGCACAGGGAGGGGGAAGGGGATCCTATCGGGGAAGCCAGGGGGACAAATAGTCCAGGCGTCCCTTCTTTCCTTACTTACT--GCTCTGCTCTGACCCACAGATGCTCCTCCCCTCTCACCCCAGACATAGATAGAAAGCCCAGAAGACACACACAATCCTCACCCGTCAACACTGACATCTGCC-TCCTCACCCCAGCATCAGCTGGACTTCACCAGCCCTGGCC a score=20949 s hg19.chr6_ssto_hap7 4661614 972 + 4928567 CCCGCCGATCCCATGGCTCCCTTCTCCACCCTTGGGATTTCTCGTTTGTTCGCCTCCTCTCCGGTACCCTCAATCCCGTAGATGCAGGTGGGCATCCTCCAGCCCCAGCAAGTACTGCGGACCAGTTGGGCTGGC-----------TGGCCCCTT--TCCTGCAGAAGCAGACAACACCCACTTCTACCCTCGTAGGAGCCCCTTTCTACACTCACTTCCCTG--GAACCCGTGATCCTGACTCCCCTCCTCCCGGACCCCAAGCATCCAGGACGTGTACGGTATAAGGGGAAGTTGTAGTGGGAGGCAGGTGGGCGTTGTTCCTGGAGTTTCAGGGTAGAGAAGCAGGTGGGGAGGAGTTGGGTGAGATACAGAGGTGGAAGCCAAA-AGTCTGGAGTTAACCTGACTTCTCTTCTGGCTCCAGGGGCTGCCGGGA-TCGTCTGTCCTCACCCTCCTTGTCCTCCCCAGCCCTAACCACCCGGCAGCCTCTTCTCTGTCTCTGCTGCCCGTCCTGCCTTCACTC-TGAAACAGCCTGC--CCCCTC--------CCGGGTCCCCAGTCCTCACCTTCGCCCCACAC-----------GCCCCCC-----TCTCTATTTATCACATTTCCTTTCGTGTCCCCCTAACCCCATCGCTTGGTGCGAGTGCTCTCTTGCCCTCCTCTCCCCATGACTGAACCTCACAGACATGGCTGTTTATTTAGGTGACACCATGTGGGAGACA-------------------------------------------------------------------CAG---------------------------AGGAACC-------------------------------CATTTCCATCCTG-GCTCCACTGGGGCATTTCCTTTCCAAGTCCTTCA-GTCCC-TCCCAACCAAGCCTATGTTACTGGGTCAGGCAAGGTGAGAGATATAAAGTATGCAAAAGAAAACGTTACTATTTTGTTGAGGAACAAGATACATGTGGAATAGTTGACAATGcagaggaacagggtagaggaaggagggttgatacagtattagagtcagacaaacgtgggttcaaatcggctctgccacttacaaactgagccaccttgc s canFam2.chr12 5679699 1035 + 75515492 CCCACAGACCCGAGGGCGCCCCACCCCACGCTTGGGGTTTCCTGGTT-TTCCCCTGGTCCCTAGGACCTTCAGAACCG--------ACCGGGCATC-TCCCGCCCGCGCAGGTCCCGCAGCCCTGGCGGCCCGGAGCTCACCCCCGCGGCCCTCTGGCCCTGCAGACAAGGACA---CGCGCTTC-ACCCTTGCAGGAGCCCCTCCCTATACCCTCGCCCGGGAGGGACCCTTGACCCCGGCTCCCTCCTCCCCAAGCCCAGCGTTCCCGGGACG-GTGGGGC----------------GCGGGAGGGAGGTGGGCGTCGCTCCCGGAGTTTCGG---AGAGAAACAGCCGCGGAGGAGTCGGGAAGGATACCGAGGCGGAGGATGGAGAGTAGGGAACGAGCCCGGCTTCTCCTCTGGCTCCAGGGACTGCTGGGAGTCACCC--CCTCACTTTCCTCATTCTCTCCAGGCCTGACGGACCCGCGGCCTCTTCT--GCCTCCGTT-CCCGCCCTCCCCTGAGTCCTGGAACAGCCCGCGGCCCCTCGTCCCTGTCCCGGCCCTCGATCCCTCCTCGGACCCCACACAACAGCACCCCGCCCTCCGCTTCTCTCCACTTCTCACATTTCT--------------------GCCGCTTG----------TCCCTT-CTCTGCAGCCCCCAGGACTGCACTTCGAAGATGCGCCTGTTTATTTCCGTGACATCATGTGGGAGACAGCCCAAACTGTTGCCCTAGGTGTCTCCCTCACCCACGCAGGAAGGAGAAGTAACTACCCTCCTTAAGCAGGTGTTCTCCTTCCCTAGTGCCGGGAGAAGGAACTGTTGGGGTGGGGGGGAGCAGCAGCTCAGATTCTCTTGCACCCTGAGCTTCCCTGGGTTAGTTTCC--CCAAATCATTCATGTCTCATGTCAGTTATGCCCGCATATATAGGCGAGGCAAAGCCAGAAATACAAAGTACACAAAA-AGAACTGGACTATTTTGTTGAGGACCTAGATACATGCAGGAGAAT-AACGTTGCAAAGGAGCAAGGTAGAGAAAGAGAGGTC--------ACTGGAGGCAGG-----GTGGGATTAAATCT----------------------CCACCCTGC a score=8706 s hg19.chr6_ssto_hap7 4662733 450 + 4928567 cagcatcgcctgggaacttgttagaaatgcaaattcttgggccccaccccagatctgctgtttaagaaactggagatggggccagcaattgcattttcccaagccc-ccaagtgcttctgatgttcacacaaggctgagga---cactgaagaagatgccccacaaaATGTTACGGCCTTGCCTTATACTATAAAGAATG---GCAAAGGGCCCGTGTAGG-GGTGCTCTGTGACTCCCAAGCAGGAGGATCACTGCAGGCCAGTAGGGAGGTGAGGAGCGGCCTCACAGAGGAGGTGGGACTGGGCTGGG--------GAAGGAAACAGAGAAGCCTTTCTGCAGTGGGTGAGGGAGATGGGGGGAAGCTCCCTCTCCCTTACCCTACC----TACCACCCAGCACGATTTTACCTC--TCAGGCTTCTCAGTCTCCAAAGCAGAGCAGACCATGTATCTGAACGCGGAAG s canFam2.chr12 5680734 374 + 75515492 CAGCAT-----------------------------------------------------------gaaactcggggtgggggga-------cattataacaacccctcccggggattctgatgtgcac-caaggCAGAGAGAAGCAGTAGAGCAGATGCTCCATGACATGTTA--GCTCTGTCCT------TAAAGGGTGAACGCAAGTGCCCCACACAGAAGGGGCTCCACACCTGTGGAGCAGGGGGATCGCTGGGAACCCTTGGGGTGGCTGGGAAGGGCCTCACAGAGGAGGTGGGATCCAGCCAGGATCCAAGTGAAGGGAAGAAGAGAG----TCTGGAGGGGGTG-----------GGGAGCCTCTCTCTCCCTTACTCTTCCATAATCCCACC--------TCTTCCCTCGCCCGGGCTTCTCAGTCCCCAAACCATAGCAGATCATGTGTCTGGACGTGGCAG a score=1490 s hg19.chr6_ssto_hap7 4663581 61 + 4928567 ACAACCAACCCTTC-------CCCAACTCCCCTACCCGGGACCCCCATC-TCCACCCACAAATCCACTC s canFam2.chr20 55316654 69 + 61280721 ACAACGAGCCCCTCAGCCCCACCGAATCCCCAGACCTGGACCCCCTCTCGTCCGGCCTCACTGCCACTC a score=5827 s hg19.chr6_ssto_hap7 4663645 621 + 4928567 TTTCCTGCCTGGAATGTGG---AGTCTCTTCCCACTGCTCTCACCTCTCTCAGCACAGCCTG---------GGCAAGGGGCCCTTCTCCTCCCCCTAATATAGGAAGTACTTCAGCCAAGGGGCCCACCTGACCCTGTGCGAACACTTTCACACAGGTGATAGGCCCTACT---------CCTGCAG-AAAGTGT-----------------------------------GGCCACAGC---------------------------------------TCTTGCCACAGCTCACACCTGGCCCAGCACTGCGGCACACAC--CTGCCTG-AACCCAATCACTGCCACCAGCGTGGCAAGGGCCTCTCCCCAAGGCTCCAGCCCGTTGCAGC--CTGC-CACTCTACACACAGGCAAGCAGCCTTACGTCTGTGCC--------ACCTAAGCCTTC------------------TTGTGGTA----------------------------------------------GATGAGGGTGCTGGCCCCCACTCCAACCTGCAACACCAGCAGCAGAACCATACCTGGGGGCGTCCCCATCACAGTGACCAGTGAGGCAAGGGCTATGGACATTGCTCAGGGCTGGTGCAGCACCAGCAAGT------------------CTGCAGAAGCAAAGGCTGCAGGCATGGTTTCTGATACAGCC-CCAGGCTGGTGCAGCATCACCAGGGCCACA-----TCAGGGACAGGCTCTACTGC--TTGCCTCTGTGGCTGTGGTTTCA--CTTGGAACACCCACCTGCCATGA s canFam2.chr20 55316783 816 + 61280721 TCTCCTGCCCCGACTGCGGGCGAGCCTTCCGCCGCAGCTCGGGGCTGAGCCAGCACCGCCGCACCCACAGCGGCGAGAAGCCCTACCGCTGCCCCGACTGCGGCAAGTCGTTCAGCCACGGCGCCACGCTGGCCCAGCACCGCGGCATCCACACGGGCGCGCGGCCCTACCAGTGCGCCGCCTGCGGCAAAGCGTTCGGCTGGCGCTCCACGCTGCTCAAGCACCGCAGCAGCCACAGCGGCGAGAAGCCGCACCACTGCCCGGTGTGCGGCAAGGCCTTCGGTCACGGCTCGCTGCTGGCGCAGCACCTGCGCACGCACGGCGGCCCGCGGCCCCACAAGTGCCCCGTGTGCGCCAAGGGCTTCGGGC-AGGGCTCCGCGCTGCTGAAGCACCTGCGCAC---GCACACGGGCGAGCGGCCCTAC--CCGTGCCCGCAGTGCGGCAAGGCCTTCGGCCAGAGCTCGGCGCTGCTGCAGCACCAGCGCACGCACACGGCCGAGCGCCCGTACCGCTGTCCCCACTGCGGCAAGGCCTTCGGCCAGAGCTCCAACTTGCAGCACCACCTGCGCATCCACACGGGCGAGCGGCCGTACGCCTGCCCCCACTGCTCCAAGGCCTTTGGGCAGAGCTCGGCGCTGCTGCAGCACCTGCACGTGCATTCCGGGGAGCGCCCCTACCGCTGCCAGCTCTGC-GGCAAGGCCTTTGGCCAAGCCTCCAGCCTCACCAAGCACAAGCGGGTGCACGAGGGCGCAGCGGCAgccgccgccgccgccgctgctgcagctgccgccgcAGGCCTAGACCTCAGCCCTGCCTCGA a score=54133 s hg19.chr6_ssto_hap7 4665328 1333 + 4928567 TTACTGTTACTCTTCATGTTATAGGGTAAGTGAGACCTTA-TTCTTGTATTAACTTGCCCCAGAGTATACTCTTTGGAACTCGGCAATATTTCTCCCTA-TGATGTACCAAGGAGGTTGATTACTGACACATGCTAGAAGAAATTAAATACGCTTAGTGGTCAAAGGATTACTTGAGAGACTGCTAATCATTtccaccctttcgggaaatgtgtattgagtctaccatgtgtcaggagttgttctgggacctgggtatCATAGTCATGTG---GCATAGCCCCTGCCTTCGAAGGATTTGATGTAGGGGCGGTTTAGAATGAGcatctcaatattgaatcca---gcacctagtcctatccattttatctgctctaatatatctcaagtctgtccactcgttttcatccctccacatccctgggctagccaccatgtggaccatgtggccttctctgagtcattgcagtagctgaagaggctgggaatggccttctctacagtatgacacacacctaag--agggatcctttaaaaatgcaaatctgattgtttcagtcagcctccttaaacctattcagtggttttccattgatcttaggttaaagacccaagtccttaacctgacctctaaggccctgcaaggggtggcccctc----ctctccagcctcatctcccaccacaccccctcactcgtgtgc---tccagttgctgtccaccttgtgcttcctcctgcacagagtctccagggaggctggaccctctg-tggaaaggctccttcctctgttcctctcctc-ttagctcctcttcattcttcaggcctcaccttct---caatagcctcagggaagccttcctgaccttcttttcagggtcaaattctcctgttatgagcgctcacactaaggtgtacctttcctcagaggcacttggccctgttggagttctacatttgttgatgattatgtacagactgatgtctgtctgccccattgaatgtaagctccctgagggcagggactatgactgcagatgctcactcttgccactcc--ctggacctaacactggatacttta-------------taaatagtggttgaatagatgcatTCATGGCAGGATCTGG-GCAGGAGGCTAGATATTTCAGGATTTCAGAGGTGATGAATTAAGGCCATGATT----CTCCCTCCTGTAGCTGCAGCCCAAGAATCCCATGTGCTATTACCTAACACTGTTACTTCCTCCTTAATTCCTGGCATCATTCAGGTCCACAGCCCTGCCTTCATCCCAGGCTTCCTCCATCTTGCCTGTGAGACCCTCTCCCTCTTTAACTTTTTAGTTCCCCTTTCTGGTTTTGCCTCATT s canFam2.chr12 5681486 1330 + 75515492 TTATTGTTACTATTCATGTTAAAAGATAAGGTAGATCTGAGTTCTTGCATTAACT-GCCCCTAAGTATACTCTTTAGAATTTGGAAA-ATTTCTCCCTACTGAGGCATCCAAGAGGCTGATTACTGACTCGTGC---AAGGACTGAAAGAACTTTAGAGGTAAAAGGATCACCTGGGAGACGACTAGTCAGTTTCACCTTTTCAGGAAGT-TCTACTGATGCCACCACCTAAAGGGGGCTGTTCTGGGACCTGGGGATTACAAACAGGTGTCTGATTGGCCCCTGCCCTGGAGGGATGGGATGTAGAGGT-GTTCGTAGTGAGCATCTCAGTACTGAATCCACCTGCAC----TCCGATCAGTTGTATCCACTATACTATCTCTCAAGTCTGTTC-CCCTTCTCCGTCCCTCCACTTCCCTGGTCCCGCCACCAGCTGAAACATCTGGCTCTC-CTGAATCCCCGCGGTAGTGAGAGAGCCTGGGAATGGCCATCTCTAACGCGTGCCGCACACCTGagttagaggcctttttgaaatgcaaatctgattgttttaggctctctgcttaaccccagccagcggcttcccattgatcttaggttaaagacccaagtccttaccctggcccctaaggccctgtcaggtgtagctctgctggtctctccagattcttctcccgtcactctcaccctcT-GTGTGAGGGTCCACTTCCTGTCTGCCCAGTGCTTCCTCCTGCAGAgagcattcatgcaggctgggctctcagcctgagagcctctttctcccatttctcttttagctagctcctcttcattcttcagatctcagcgtctctgccacatcctcaggaaaggtatcctgcccttccttcctggatcagattcccctcttctgagctcccacaccaaggggcaccttccctccgaggcacttggcgcgactgcagttctgtatttgttcattatt------tgatggaggcctcttttccccagaggatgtaagctccctgagggcagggattgtggctgcagatgctcactcttgtCATACAGGGGGGACCCTGAACTGGACACTCCAAAAATATTGAGTCGAAATATTGGTTTAATGGAGGCATGGGTGCCAGGATCCGGAGTAGAGGGCCAAATATTCCAGGATCTCAGAGACGATGGTTTGAGGCCATGATTTTCCTTCCCTCCAGCAGCTGCAGCCCAGGAGTTCCATATGCCATtttctttcg-tctttctttcttctttcttctt--------------------tctttctttctttctttctttctttctttctttcttt----ctttctttctttctttcttctttctttctctttctttctttctttcttt a score=2197 s hg19.chr6_ssto_hap7 4668094 63 + 4928567 TTTAATCTTTTTAATCTAGCTAACTAGGAATAGAAAGTAACTTCCAAAGTCAAGACAAGGATA s canFam2.chr12 5684210 55 + 75515492 ttcatttttcttaa---atctacctaagattcgaaaataacttccAAAGT-----CAAGTATA a score=2464 s hg19.chr6_ssto_hap7 4668157 56 + 4928567 CCAGTTTTTACTGTTTCTATTCACCTTTCTGCCAAGAAGTCTGAAGTGACACAAGA s canFam2.chr12 5684499 55 + 75515492 CTAGTTTTTACTGTTTCTATTCAACTTG-TGCTAGCGGGTGTGAAATGGAGCAATA a score=7878 s hg19.chr6_ssto_hap7 4668213 189 + 4928567 Agaaaaagaagaaataaagccatcactatacatagacaattactatacatagattgcttactatacaaagaaaattcacaagaacctaccaactattagaaataacaatttccttgccgggggcaaggagaatacacaaacatcaatatccttacaccacagcaataaacagataaaagatttcatttt s canFam2.chr12 5684766 169 + 75515492 Agaaaaagaagaatcaaagtcgtcattatacatagataatta----------attaatgac---------aaaatttacgagaagccacaaacaattagaactaatatatccctttccagggacaa-gataatatgcaaacatcaatttgtccataccacaccaataaacaaatagaagattctgtctt a score=12528 s hg19.chr6_ssto_hap7 4668709 252 + 4928567 taccatttgtcat---aacaaaaatcataagatacttaggaataaatataacaaagtctgtgtatgatatttatggagaaaattataaagttttattagagaacat-----aaagaagatataaaagaataggaagagatcccctactcacaaagacggaagtttgat--------------------------ataaagctgataatttttctcaaatctaaaaat-tcagtacaattctaagcaaaactccaatcagatattttatggaacttgacagactgttc s canFam2.chr12 5684942 287 + 75515492 tgccgtttataatagcaacaaggactatagaatactgagaagtaaatatgacaaaatatgtgcatgatctttatggagaaaattataaaaccttattggagaacattttgaaaagaagacaaaaaagaatggagggatattctatgctcaagaagaggaaaattcaatataaagctggtaatttaaaaaaaaaaataaagctggtaatttgtctcaaatctataaatgtcagttcaattctaattgaaaccacaacaatatatttcatggcacttgacaaactgttc a score=7330 s hg19.chr6_ssto_hap7 4669263 186 + 4928567 ttaaaattcttatggaagagtaaatggccaagaaaaaacaa----aacttgaagcagaagaatatgagat------cccttgcc-ta-accatatgtcacaagtttactggttgaaacttagagtgattaaaacagtctagtcctggtatatgcacacataaatagaccacag-tacagaacaaaacttttttgaatca s canFam2.chr12 5685229 196 + 75515492 ttaaaattcttataaagaagtaaatggccaagaaaagccaacatgagtttgaagcagaagaatactagaggggctactcatgccgtatatcatatatcacaactttgct-atagaaagccagagtgatcaaagca-tgtagtcctggcacatgggcaagtacataaactactgttacagagtagaac-ttcttgactca a score=2562 s hg19.chr6_ssto_hap7 4670141 62 + 4928567 gaccctcaaagatatgag-acttggc-tataatggaagtgacataaatcagtgggaaa---------------------------gttcaa s canFam2.chr12 5685425 91 + 75515492 gaccttcaaagatatgagaacttggtatatgacaaaagtgacataaatcagtggaaaaagatggactgtctgttagattatcttgggtcag a score=6904 s hg19.chr6_ssto_hap7 4670203 170 + 4928567 tggttttgagttaactggctatccaaacaaacacacaaaa----------aataaat-tctacattacatcctacccagaagtaaatttcaggtagctaga----gtaaaaagcaaaactgaaaactattcaaagaaaatataagatcacatattgatgatatcagaatagagaaggatttctta s canFam2.chr12 5685708 180 + 75515492 ttatcttgggttaattgactatgcaaatagaaaaaaaaaaaaacgacaacaacagatccctacattacaacatacac-----caaaattcagatagcttaaatatgtgaaaaacaaaattttaaactgcttgaagaaactctaagacaatatattgatggtatcagagtagggaaggatttctta a score=2543 s hg19.chr6_ssto_hap7 4674351 88 + 4928567 tataaataaatgcacaagcaataaaggaaaatattgatacatatgaccacgttaaaacatttttaagctttta-----taagaaatcacatag s canFam2.chr12 5685891 90 + 75515492 tacaaagaa---cagaagaaataaaaggaaatatagacacatatgactctatctttattttttttaacttttacaagataagagacatcacaa a score=7845 s hg19.chr6_ssto_hap7 4674740 312 + 4928567 tcacgtaaagtaaaagacaagccacagacttagagaatattcacaatctacataaacaacaaaggatta-tatccaggattcataaagaagt--tgcagatccatatgaaaaggacaacgcaagagaatatgagcaaaagctgtgaataggtgagtcac---aaaagagaaacctaatggtcaataaacataagaaaagatgctcaatttaaccagtaatgtagaaatgcaaatcacagcgcgagttaccattttacacccacaaaatcaccaaaattaaaattattctaacactgttgacaaaaatgtgggacaata s canFam2.chr12 5685981 252 + 75515492 caaaataaaaatacaagcaagccacagacttggagaatatttacaacctaaaagattaatgaagatttggtatccaagatgtataaagaactcttgcagctcactaggaaaaggacaaggcagtagaaaatgagcaaaagctacataccggcaagtcaccaaaaaaggaaacccaaatgatcaataaatacatgaaaagatgcttaacttcat--------tagtaatgaaca-----------------------------------------aatgagaat-----------------caaaaccatgagacagta a score=2352 s hg19.chr6_ssto_hap7 4675726 93 + 4928567 AATGATGGTGGCTGTGCAGGTGGAGAGATGTGATTTCCTGACCTATTCTCTCCTCCGCC----CTGTGTTGAGTCTCACGCCTCCTATTGGACGGTA s canFam2.chr12 5687405 97 + 75515492 GATGCCTGATGCTACGTAGGTGGAGAGAGCTGGCATCCCTACCTATTCTTATCTCCTCTTATTCCACATGAGGTCTCActcctatttatgcctggta a score=8311 s hg19.chr6_ssto_hap7 4676140 208 + 4928567 cttaacagctacatgccccaatttcctcacctacaaaatgtgtatattcaaagtgc-tacctaatagcattgtcgtgagagtaaataagttgtgtgaagtgctttagaacacttacctggcttagagtaactgctcTAGGCTACtgtttttgttgttgatgctgttattatggttgttgttAGGTATCACCTCCAGCTGCATATAAACT s canFam2.chr12 5687517 202 + 75515492 cgtcattgctacatgcctcagtttcctcatctataagatgcacatgttaaaagtgcctgtctcctagctttgctgtgagatttaagtaggttaatagagc---ttggaacagtt-cctagcttagagtaactacactagaaggtggttgttGCTGTTGATGATGATATTAG---TGTTCTTGGGGATCACCTTCAGCTGCATATAAATt a score=1378 s hg19.chr6_ssto_hap7 4676349 20 + 4928567 TTTTTTAATCTCAACTTCTA s canFam2.chr12 5687940 20 + 75515492 TTTTTTAATCTCAGGTTTTA a score=10691 s hg19.chr6_ssto_hap7 4676369 274 + 4928567 AAAATCTCATAAGAACCTTACTTGGCAACGAAAGTGCCCCAAAACTGAGAAGACCCAGACTCTTCCTTCAATGATCTAGATCAA---TTTGCACctcaaattcctgtaagggccaggcaagtaatgtgccaagtgccaagggaaggctataacaggctggagggcaccctcccctcctagaggggcagcagctcctggtccagcGTTGCCGCATAGGAATTCAGAGCTGGCACTGCCG----------------------TGATAAATTGAAAATCTCAATTTTTCTGTAAAATCACTC s canFam2.chr12 5688153 267 + 75515492 AAAATCTCTTAAGAACCTTATATTGCAATGAAAGTGCCCGCTATCTGAGATGCCCCAGACTCTGCCTTCAAGGAGCTACATTAAGGCCTGAAAACTCCCATCTCTGTGAAAGCCAGGCAGGTAATGTGCCAAGTGC------AAGGTTGT--------------------------CCAGAGAGGCAACAGCTCGTGGTTCGGtgttgccttgtaggaattcagagctagcattgccacatttaaaactttttttttttttgcaatactataagtcccaatttttctgtaaaatttctc a score=4485 s hg19.chr6_ssto_hap7 4678906 80 + 4928567 tattcataatctcgtattcaatgtccatcta-ttacaacatagagaatcaatatcatacttcacaagagttatatctagac s canFam2.chr12 5692884 81 + 75515492 tatttgcaatctagtattcaatgttcattcgcttaccaaacagaaaatcaatatgatactgcacaaaagttatgcctagac a score=30606 s hg19.chr6_ssto_hap7 4679151 618 + 4928567 acatgcatataaatttaacagtaataaggattgtttaatacagcaacatgttcctcagctatcctttgcaactgt----tgtaaatgcagcacaacatacatccatacctct--aaaacaaagagaaacaagaaaaacc-acactcaacactattgggaaatgatactttgtcatgctatttgagaggtaatatttaacaagctggttaaagtga------tttcacttacatgtttccactgcttaaatcctccctacactccaaagcagtacatgcttcagaatccaggcagaggcacaacctcagattttcacagaatt-ggctatagtcatcttttgtttccaggatacagggcaagagattacagaagtcaccattccccagggcttgaacggcgttgattac-aagagcagatgtgtaagatttcaggttgtgctgttccagcactgacagc-agatcagtgacagaggtgcccaggtgtcatgtaataaat---gtgtgtgataagttgtttgtgataggtgaatccccctaaagtatgtgggccagggcagggcccctgtggttcagatctgaggatgatactgCTTCTGTgggaagatcatgacttctgtttcaaatatgctaagtta s canFam2.chr12 5692967 603 + 75515492 acatgtatactagtttaacagtaataaaaatcatttaatattgcaaaatgttcctcagttgtcatttgcaactgtcatttgtgaatgcagcataatataaatcaatacctctggaacacaaagagaagcaagaaaaatggatactcaacactattgggaaatgatactttatcatgccatttgaaagctaatatttgacaaattaattaagttgcattttctcttacctaagtgtttctgccacttaaatcctgcttacacagcaacccagtgtgcacctctgaatct-ggcagaggcatagcct-aaattttcacaggactcagttgtggtcatcttttgtttccaggatacagggcaaaagattgcagaag---catttccctggggcccagatggtgttaattattgagagcagatgttcagggtttcaggttgtgctgtgccagcactgagggccagattcc------aagtgcctgggtgtcatttaataatttttgtgtgtgataag---------------ga---cccctaaagtatgtgggccagggcaaggcccttgtggtccagatatgatgatgacactg----Tgggggaagatcatgattta-gtttcaaatatgctatgttt a score=24234 s hg19.chr6_ssto_hap7 4680082 671 + 4928567 gtaatacctttgggacatccaagtagggatgccag-----gcaggaaggtggtcaaatctggagatttgaggcaagagataaatttgagagtaaccagctgatgggaactgaagccacaggacaggtgtgat----cccctagaaggaaagggtagcataagaagaggagggtccaggaccgacctctcttgatgaactccaatatgaccaggtgatttcagtcaaaggcggagtgagccggctgaggggtggaagagcagccgatggagggatgggaggaagccagaagag-gccaaatcctggaggccaaaaaacgacagtgtttcaagaaagaactggccagcaacgtcagctactagtggcagttcaagtaagaagaaaacgaaacaatggacttaatgacataaagttcattgcaaaaaaacatttgagtagcagcaaggtagagataaacaccagcctgaaagggtcgagcagtgagtggaagtgagagaat-------ttTGCCCAGTTtttttattatgaaaaatttcaaacatacagaaaacttgaaaatataatacaat-attgtttgtatgtcgatcattttacttagatttaacaattgttatttatacatatatacaaatatttatatattatatatatacaaacatatatATATACACACACATATATATATGGt s canFam2.chr12 5693570 643 + 75515492 gtggtacctttgagacatccaagtagggttcccaatgtaagcagtcagatatacaagactggagatcagagaaaaaatacaaattttagagtgatcagctgatagcagttgaagccatgggtcaggtgtgatgagtcccctggagggaggatatagcatgagaagagg--gatttgggactcactgcccttgatgaattctactatggctagatagt-----------gcaggatgagcccacaaagaagca-aggagaagcca--gagggaaaggaagaaaatcagaaaagtgctcagtcctagaaactaaatgaagataatgtttcaagaaagaattggtcaacacagttgactactgggatgaattcaagcaggggaaaacgggaaaaatggatttaatggcagaaa--tcattgcaaaag--cagtcaagtggcat---gagagaggtggacactcacctgcaggggttgaggaatgagtggaagtgagggaatggagaagtttttcccaattttttatcatgaaaagtttCAAACATAGATAAAAGGTGAAAGTATACTACAATTATCATTTGTGCGTCCACTACTTTACTTAGATTTAACAGTTCTTTTTTTTTGATTTA-ACAGTTCTT----------------------ATTTATACATACATACAAATATTTATGTGTT a score=4072 s hg19.chr6_ssto_hap7 4681420 103 + 4928567 AAACAttcttggaccatatgaaaatataggaaagcatgtgc-ttcacacctaagtacctcagcatgcatctcccaaaaataaggagattcc------ataaccacaatac s canFam2.chr12 5694447 110 + 75515492 gtatattcttgaaccttgtgaaaacttaggaaatcatgagccttcacactttaatacttcagcatatacatccttaaactggagactttctcctatggtaaccacaatgc a score=19827 s hg19.chr6_ssto_hap7 4682415 425 + 4928567 gtgtggatctggtgacagatggttgagggagctcacctctgatgactttcattttctctgtgacataagagggaggtcatcaagtgagcatgaggtgagagacagaagagcctcagaggttcaaggatcagggaggtttaacgtagccattgaccagagtgatgtggttgggccactaaacaattctgggagcctccttagagttcatgatcatgagtgaggagtgggaaccatttcctgattgtgtgatttcccccaccaccaccaacagttcttggctatcagagtaaaatcctgaagaaaacagatcactgggctcatccagggttggggttttgccacttgggtacaaaggatgaaaataca-gaggggaaggggagttggcgatattgtccagagaggtgttgaaatgaagggttgtggag s canFam2.chr12 5695042 400 + 75515492 GTAtaaatttggtaatggatgtttaagggagttcacctctgagggcttcaatttcccccatgacataag--tgagattatcaagtgaga--gagatgagacagaggagagcttcacaggtcccaggatccgggag-tttaaagtagccactgaccagtgcaatgtggttggatcactaaggaatgctggg------------gctggtggccacgaataaggcatggtaactatttcccagttgtgcatcttccttca---------atgtttctgggccatcagagtaaaatcctgaagaaaatagatccctggactcatctaggggtggggctttgccaggtaggagcaaaaggtgaaaatataagaggggcaaaggagttcgggacattgtcaagacagttgctgaaatgaaaggccatgcag a score=31650 s hg19.chr6_ssto_hap7 4682840 748 + 4928567 ttgagctgaatagggaggggctcataagctggaagacggaaggcatcattgatccaaaggtcctaggagactgaaaattggttgcgaggagggcagacagactgatggacagacggttaggaggtgggggccaaga---gcaggctgcttgact----gattctcaaggaggggctctttcaggtgataaggtccagggtatgacaatgagaatgtgtggccgagttggagaggagaagattcttggggattaagtggccaggttattgagaggtcaagtagggaatggatcctccaggtggacaatgaagtctcccagagggaggactcaatgcaaagacagacggtcagctggg--ccagcgttcccctgagtgaggtggag----------gggtctggcagacagtag-cagtgagaaagga--agaggaaagtttagcctaattgcagtgcctggaaggccgcgggttattttaaact-agagttgggggctgggggaggagtagtccggaggcagcaatctgaagccaggagagcaccctcagctgtaagaaaatcaacagctctcatttcagaagcctgcaaaggaggtagtgccctcaagggagagttaaatttcacttaacgccaggaagtggagggaatgctccaaggagaagctaagggtatgaggggggctgcagtttattagagggcaca--ggcaggttagggagggggaaagtggagggctgagtcagagccagaaggtacagagtgtcatggagaca s canFam2.chr12 5695650 736 + 75515492 tgaaagtgaatagg-acggactgatgggttggaagaagggaaatatcattgacctgaaggtaccgggaggctgagaaacggtggtgagg-ggctagacagggtgatggctgcaaggtcagaacatggaggccacatcatgcaggttgcttgaacaagggattttcaaagaggggctccttcagatg------tccggggtgtgacaaagggagtg-gtggctggcttagagtgcagaaggtcct--gggatgatgtcattgagttgctaagaggccaggtggggaatgggtcctccgtgtgggcaatgagat--------gggaagacacaatcca---------------ctgggtgccagtgtccccttgagagaggtaaagcgaggtaaggtggtctggcaggtggcagatggtaagcagagaggagagggcaatttagttgaatgcccgagccacagaagcagagggtaattttaaattcaaaactggagcctggaggaggtatagtttggaggcagccatctagagcaaggaaagtaccctcacctataagaaaataaacagctcttatttcagaagacagcagaggaggtagtgcccccaggggagagttatgtttcatccaaagccgggaactgaagggagccctctaaggagaagctaagggaatgagggggtctgcagtttataagagcccatgagggtagctcagggagggg-caagtggagagctgggtcaggaccaga--gtacagggtgtcatggagaCA a score=3657 s hg19.chr6_ssto_hap7 4684510 78 + 4928567 tcctctctgtaaaatggggataacactagtacccacctcacagggttgctgtgacaattcaaagatgcaatgtgttaa s canFam2.chr12 5696412 78 + 75515492 Gcctctctataaaatggagatgacaagagtactgacctcagtgggctgctgtggggattaaatgacttgctgtgctaa a score=12184 s hg19.chr6_ssto_hap7 4685634 330 + 4928567 GTGCTTGGGCTGTCACCTCAGACACACTTGGTGGAGCCTTGCAGGC--CCAGCAGAGCAGCCTCTTTGATTACCTGAACCCTGCCCCTG-GCTAGGTAGGAAACATGAA----------GTGGATGATAATGATGACTTG-ATGAGCAGTTGTGAATGCATAAATTATATGGAGACACTAAGGACTGCAACAGACAAGAAGATCTCAGTGACAA-ACGGGTTATTTAGGGCAGCAGCCAACTGACTCCCACAATGAGTGGGATCTGGACAAGAAGGCGTGGTTTCCCAAGGCCACTGAAGGTTTCATTGCTACATACCCAGCCAAGTGTGGCTTTTCTAATGGTG s canFam2.chr12 5696490 329 + 75515492 gtctctgggtagttgcctcacataCACTTGGCTGTAGCTCCCAAACTGCTGGCACAGCAGCCTGTTTCCCCACTTGGACCCTGCCCCTGTGCTAGGTGGAAAGCACAAGCGGCAAGCACTTGGATTGGAAGGACAAGTTGCATGAGCAGTTGGGAATGCAAGAATTACATGGAGATAT----------------CAAGAAGATCCTAATGAAAAGATGGATTCTTTCAGGTAGCAGCTGGCTGATACCTCCTATAAGTGGGATCTGGATGAGAAGGCTTCGTTCCCTGAGAGCACAGGAGGTTATATTGCTACACATAAGGCCACTTGTGGCTTCTCCAATAATG a score=6979 s hg19.chr6_ssto_hap7 4685964 121 + 4928567 GGGCATCTAGCTCTCCTGCAAATGTACAAAATGTCAATGCTAGGAATGC---AGAATTTCTGCAAAGAAAACCCCCCAAACCCACTGATCCTAAAAACAGGGGAGATAAAAGAAAAATGGAATG s canFam2.chrX 109919734 124 + 126883977 GGGCATCTAGCTCTACTGCAAATGTGCAAGAAGTCAGTGCTAGGACTGCAGAAGAACCGCCACAAAGAAAAACCCCTGAACCCAATGATCCCAAAAAGAGGGGAGAAAAGAGAAAGGCTGAACC a score=4233 s hg19.chr6_ssto_hap7 4686085 55 + 4928567 AGGATAATTTCATGTTGAAGAAGACAGAAATACAAATGTCTATATATCTGGTTTG s canFam2.chrX 109920711 55 + 126883977 AGGATGGTTTCATGTTGAAGAAGACAGAAATACAAATGTATATGTGTCTGGTATG a score=5607 s hg19.chr6_ssto_hap7 4686147 84 + 4928567 GAGAAATCCTCA----GAAGACTTCAAAGTCAAGCTTTATGAAGATGATCAAAGAAATCTTAAAGGAGATGCGCTTTGCTGTTACTTG s canFam2.chrX 109921355 88 + 126883977 GAGAGATCCTCAAACAGAAGAATTTAAGGTCAAACTTTACAAAGATAATCAAGGAAATCTTAAAGGAGATGGTCTTTGCTGTTATTTG a score=4326 s hg19.chr6_ssto_hap7 4686231 60 + 4928567 AAGAGGGAATCTGTGGGCCTTCCATTAAAGCTTTTGGATGAAAATGAAATTAGAGGCTGT s canFam2.chrX 109924425 60 + 126883977 AAGAGGGAATCTGTGGATCTCGCGTTAAAGCTTCTGGACGAAGATGAAATTAGAGGCTAC a score=5445 s hg19.chr6_ssto_hap7 4686630 95 + 4928567 AAGCTGTTGGTCTGGGGATCTGCAAGG-GAGCTGGGCCATCCAGAAGGTACCATAAGCAAGTTGTCATAATCAAACATATGTTTCATCCTATGGAT s canFam2.chrX 109925685 96 + 126883977 AGGCAGTTGGACTGGAGACCTGAGAGAAGAGCTGGCCCATCTCGAATGCGCCATGAGCGAGTTGTCATCATCAAAAATATGTTTCATCCGATGGAT a score=3182 s hg19.chr6_ssto_hap7 4687342 85 + 4928567 TGTGGATTTTAAGGATGATGAGTTGGTGCTAAATGAGCTCAGAGA--ACTTTC------AGTGCTCAACATTGAGACCAATGAGGAATGTTTT s canFam2.chrX 109931326 93 + 126883977 TGTATGTTTGCAGGATGATCCATTGGTGCTGAATGAAATCAGAGAAGACCTTCGAGTAGAGTGTTCAAAGTTTGGACAAATTAGGAAGCTTCT a score=5570 s hg19.chr6_ssto_hap7 4687428 128 + 4928567 TTTGACAGACTCATGGATGGTGTGGACTCTGTGTTCTGGAGGAATGCAGAGGAAACGGATTATTATATTCAAGTCCTCCTTGGAAGGTGGTTTGTTG--------------ACCCAGACATGGAATAAGGTTACAGACTATT s canFam2.chrX 109932444 142 + 126883977 TTCTAGAGACACCCCGATGGTGTGGCCTCTGTGTCCTTCAGGGATCCGGAGGAAGCTGACTATTGTATACAAACTCTTGATGGAAGGTGGTTTGGTGGCCGTCAAATCACTGCCCAGGCGTGGGATGGGACTACAGATTATC a score=5558 s hg19.chr6_ssto_hap7 4687556 121 + 4928567 AGGTTCAGGGGACCTCAGGAAAAAGG-AGGAAAATCTAAGGGGATGGGAGGCTTTCCTCAGTGCCTGTGAGGCCAACAGACACTTTCAATCTCCAA--TGTGTGTATGCTTCAGAAAGGGCAAG s canFam2.chrX 109933080 124 + 126883977 AGGTGGAAGAGACCACAAGAGAAAGGGAGGAAAGGCTGAGAGGATGGGAGGCTTTCCTTAATGCTCCCGAGGCTAACAGAAGCCTTCGGCGTTCAAATTCCATCTGTGCTTCGGAAAGGGCGGG a score=16339 s hg19.chr6_ssto_hap7 4688097 451 + 4928567 GAGAGGAGAAAACACATTTCTGCACTTAGGAACCTCCTTTCTCACCTCAATTCTAGCAGCTCAGATGAGGTGTCAGCTCCCTGCAGGCTCTGGATGAGTCCGTGGGGCCACAGAAAAAAGAACTGCAGAA--AACT-CAGGAATAAAAATGGAGACAGTGACACTTCCAAGTAAAACTACTAGAAGTCTTCAGAAAGTAAGGCAAGAAAAGGAAACTTGAGGACCAGAGAAGCTGCCAGGCCAGTTCATTAAGCCTTGGCTTGACCAGGAAATCCAGTGTTTTCTTGAAGGATGGAAAATC-------------------TGGAGATGAAGAATGGGAATCATGTACTGTCAAACGCAGTTGCCAAGGGGTTCAAGCCCAGGGGTGTGAAGAAGAGCTGAGACC--TGCCTACAGATGCC---AAGATTGCAGGGCTCATCCTGGACTATTAATGAGACCATCCAGAGGCCAAGGAGC s canFam2.chr9 234575 471 - 64418924 GAGATGAGCAA-CACACGCCTGCACCTGGGGACCACCTTACTTTCCTGAACACCAGGAGCACAGAATAAATGGCAGCCCTCTGCCAGCCCTGGAATAGGCCCTGCAGCTACAGAGCAGAGGGCTGGAGGGGGAACTGCGGGAATAGAAATGGAGAAGGTGACACTGC-AGACCAAGTTCCTAGGAATCCTTAGAAAGCAAAGGAGGAAA--GAGACTTGGGGACAGGAGAAGCCTTTAGGCCAGTTCGTGAGTCCTTGGAGTGAGCAAGAAATCCAGAGTTTTCTGGAAGGCTGGGAATTCTTTGAAAGTGAGGTGCATGTTGGGATGAGGAATGGGAAGCATAAATTGT-GCAGGCAATTGTTAAGGGGCTTGAGTAGAGGTGCCTAAGGAAGAGCTGGTGACAGTGTCTACAGATGCTGGGAAGTTTGCAGGACTTACCTTGGA-TGCTCACAAGGCCAGCCAGGGG-CAGGGAGC a score=12594 s hg19.chr6_ssto_hap7 4688556 314 + 4928567 CTCACCTTTGGGGATACTGGCCCAGCAGTGCTGCAGATCCTACCCTGAGTAGAGTGACATGAGAACTGGGCTGGGGGAGTTGA---GGAGAAAAGGAAGTCTCAAAGGCTCtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtAAACTGGAAATGGTTAAACTCCCCTGTGTGCAGTGGCATACCAAGCAGGGTGGAGTGGGGGGAGGAGGCTACACTGCAaggggtattttgtcactaacatttttttataattgctggtgcgcagt---atcaataaaaagttggcttcag s canFam2.chr12 5697828 295 + 75515492 CTAGCCCTGGAGTAGACTGGTCCAAAAGC-CTACAGATCCCACCCTGAGTGGAGTGAGATGAGATTTGGGATGGGGAGGTTGAAGGAGGGAAAGAGAAGTCTCAAAAG-----------GgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtA-------------AAATAGACACTGTTAATTGTTAAACCCCTGTGTGTGCAGTGGGATACCAACTGAGGTGAAGTGGAAGAGGGCAGGACCACAgagagaagtgttttgtcactaacactgttatagaatcgttggtgcatgatgagaacaataaaaagtgaatttcag a score=5201 s hg19.chr6_ssto_hap7 4689187 299 + 4928567 tatttttaaattctccacagacaatacaccttcttattacctgcacctggaacaaccatccccactccctgcccatggtaagcTGCAGCCTGTGTGTCCTATGTGGGTAAACAGTCCAG---CTCTACCAGATTGTAAATGGGGTTGGGGGGTCGGGGTA-GAGGGCATGGCGAGTAAGGATTATTTTTCGCATAATAACAGTTTTATGCAGCATGGTTTTGTACAAGAGAAGTGTTTTCTAAATATTTGGCAAATAAATGAATAATTGAATTTGAGTAATAATGAAGAAAATATGAGCAGGA s canFam2.chr12 5698337 201 + 75515492 tattttaacattttctacagacaacacatcctcttgct-cctgca-ctggagcaacctctccctctgcTTGCTGTCAGTAAGCTGCAGCCCAGGTGACCCATGTGAATAAACAGTCCATCTCCTCTACCAGATT-------------GGGAGTCCTTATAGGAAGCCATGTCAAGTGAGGATTATTTTGCACGTGAT-------------GGCATAGTTC--------------------------------------------------------------------------CGAGCAGCA a score=8558 s hg19.chr6_ssto_hap7 4689873 469 + 4928567 AAAACAGGAAATGACAGCATCATTAGAGATTTaaggtttcttaactttttacgtctaggacaggttttggaagtctggtgaagtctgtggagtgtcagaataatcttcaactgcataaagtaaaataaatgggattacaaaggaaaacaatcatattgaagtacagttgtcaaaatgaaacaaaatgtgtaagaagaagatctagtggtgagtctaaccactaccactaactacaaagtaaccgtgagcatacatgacattttgaaatttctgcaactactggaagatg-------acacaaatgtgtaaattctattaacaacagtcacatgtactacaaataccggtgtaggtttattgcctacatttatcattggagaaaatgctaaatttcagttagagattagtgaaaatgaaatgtaattttctccTATTTTTGTTTGC----CCTTTGGGATCCTGGATGAAGAGCCCTGCAT s canFam2.chr12 5698538 315 + 75515492 AAAATAAAAAAT--------------AAAtttaa----------------------------------------------aaatgtgtgatatat---aataacattcagt------------------------------------------------------------------------------------------------gtaggtctaaccactatcaa-aactataaagcaatgatgagcacacatgacattttaagatttctgca---actggaaggtgatgtgatataaaagcatctgatttctattgatgacagtcacagatactgctaattctgctgt-ggtttgttgtctacacttttcattggaggaaatgctacatttccattagaggttcgtgaaaataatacgtaattttttCTAATTCTCAATCACAGAGCCTTTAGGATCTTGG-TTAAGAGTCCTGCAT a score=74943 s hg19.chr6_ssto_hap7 4696308 2749 + 4928567 GGCTGAAGAAAAAGACCCTCCGCAGCTTCAGCGCGAAGAGGGCGGCGGGGACCGGGGTGGTGGGGGTGGAACCTCGCCGCCTTCCGAAGCAGGAGTAAGCTGCAGAGGCTGCGCGGGGGTTTGAGCGGAGCGAGAACAGCTCCTTCCCTTGATC-ATGCTGCCCTCCGGAGGTCAGTTTAGGTATCGCCGCTCCCTTTCACGCTGTTTTGTCTCTTCACCGTCTGTTCTGGATCATCCTGTCCAGAGAGACCGTTGGGTCAGAGGGTTCCTGTGGACCCCTGGGGCGAGCTTAATGTCCCCGAAAACTGCGTGCTCCAGTATCACTTGAATGCCCACCGGGTTCCGGAATCACGAGTCTCCAGAGCTGTCCCTTCGCCCCACGGCTCACATTCCAGGTCTGCCCCTCAGTGACTTCTGCAACAACACGCGCTTCTCGATCAGCTCTGAGGATTT----GGGTTCTGCGACGGACAGGGGAAGGAAAGAAGGAAGGCTGTGAAGAACCGTGGTGCCTGCCTGCACAGCCCTCCTCGCGTGCGAGCATTAGTTGGCT------AAAGTCGCCTGTCTCGA---CAGTCTCCCCTGCGGGGTATCTGGGGACCCTTTCTTTGGGAATCCACGCTCTTTGTCAGAGTAGCCAATGCCTCTCCTGTCCAAAATCTCATACCCTTGGC---CCTTCTCCCGTCCTCGCGCTGAGGCTGGAGTCAGGTCAAATGTCAGAACATCTGGATGTCCCAAGAGTGACA-------CCTGGGAGTGGGTGGGCAAGAAACCAGTAGCGGGAAGGGAAAGTGGAGGAGCAGAGGATTCCCGGGGCCGGCGTCTGGGGTGAGCTCGCGGCCCCTCAGAGCCTGGCACATCGCCGCCTGGCATCCGGCAGGCGTGAGGGAACGCATAGCGCAGCGAGTCAGGCGGGGTAA------------ACCCGGAGCAACGCGGAGGCGGTGATCTGGGCAAGGGCGAGGTCAGTTAAGGACGCAGTTCTGGCCCCGCCCTCAAGGCACGCCTGGCCAATCAGGAATCGCTGATTCACCAAGCCTCTCCTCCTGCGCTCGCCCTCTTCTGCACTTCGGTCTCAGGCGCAAACACGTTCAAAGTCGCTAGGCCAAAGCGCTGAGATACGGTTTCCCAAGCCAATTAGAGAGCGGCTCTCGGATATGGGGCGGAACCCTGAAAAGGCGAGAGCTGAGATGCCGCTCCGTTCTGCCTTACCACGCCGCCCCCCAGCGTCCGCCAATTAGGAGAGCCCGGA-GCCGGATCCACTCTCAGCCTCAGGAAGCAGCAGCCTCCGCTCCGCGGCGGGTGTGCTCGGCAGTCACAGACCCACTCAGGACACCTCCCGTTGCCGACGGGCTAGACCTGCATCCGAAGGGCCTAAGC--GGGGAGGAAC-CGCTTTCCACCACT--CTCCAGGGACCTGGGGAGGGAATGTTTAGGCCGTAGGGGTGGAGGACACAG--GAAACGT---------AACATTTTTCCTTAACTGC----GCCTCTCTTCTTAGGCCTTAAAGGG-GTCCCCGTGTCTCTCCAGTCTAGAGCCTAAGTTCAAACGAGGCGTATAGGCGAGGACAGCAGGAAGGCTCCAAGTCAAACAAACGGATGGTACGAATTTCGCCTGGTCTAGCCCTGCCCCAACGGTGTGGGTGTGGGTTGGGTGCTGCAGCCCCCGAGCAAGGGGCTGTCACAGCCACAACCAGAGGAGCTATGGAGCTGCTACGGAGGAGGGATTCCAGAGTCAGCTTGGGCTTGTCCCAAGGGAGCCCTTGGGACAGTGTCTGGGGCTGCGCGGCCTGGTTCTCATCCCTTGCAGCATCTGCTA------------------------------TTTTAGCCAGGGGCCACCTTCCTCCAATGGCCTGG------------------------------------------------------GAGTAGCTAGAGGTTAGAGGTTAC-----------------------ACCCACCAGAAGGGATGTAAGCCCAGGAAGTAGTCAGAAAGGAAAGGTCATTCT-----AGAGATGGGG-CCACCTGAAAAACCTTCAGGAGGAAGGAGAAAGGAAATGGGATAAG--TGTCATGTCATACTAAATATTTATT---TTCTGCAGACTGACTTCGGAGTAATTCTTGAGCCAGGAGGGGAGAGGTTAGTGTTCAAATTGCTGAGATCTTAGGTCAAAAAGCTACAGAAAAGAAATCACTTTG--------------AAAAACACAATGACTCAGAGGCAGTCACCCCTTGCCAGCAATTCCAAGAGCTGAGGAGGCTTCATGCCTCAGGACATGGTGACTAGTTGAGTGAACCAGAGATTGAGGCAGTG--GTTTTTACAGGGGAAGAAACAAGCCTTGGGTGTATGGGAGCAGGAAAGGAGGGTGACAGACTGGAGAAATGATAAAGGCCATTTTGGAAGCCCACAGGGAAGTGGTCTTGGGAAACCTGAAGACACTGGGATATTCAGAAGGCCAAGGGGATCCAGCTTATCCTGTTG-GGCAAGGTGCTGGGAGTGAAGGCAGGTAAGCCATGTCAAGGGCCTGGGAAGCAAGGGGAAAACTGGAAGGGGTACCCCAGGTGAAGAAGGGTATGGAATGGGGTGCAGAAGTCCATGGAGATGACCGGCAGATCTCAGGGCGGTTTCTGGCACATCAGAAGTTGGGCTTATGCTTCTTGAGCTCCACCATAAGGTGGTGAATGTTGATGAGCTCAGCCCGGGCAGGGAGGGCTCGGAGCTGCGGCTGGGACAGCACCCGGTGGAAGCGATGATAGAGCTGGATCAGCTGGGTCAGCGCTCCCTGGTCAAAGAAAGTCATTGAGGGATCAAACCGTAAAATGGTGCTAATAGTGATGATTAAGAATCAGG s canFam2.chr12 5699072 2533 + 75515492 GGCTGAAGGAAAACTCCCTCCGTCCTTTCAGAGAGATGGGAGCCCTGGGG-----------------GAACCTTCGCAGCCACCTGCCGCGAGACCAAGCAGC---------------------------CCGGAACAACTCCATCTCCTGGTCGATGCTGCCCCCTGGAGGTCTGTGTGGGTACCGCGGCTCCCTTTCACCCCATTGCGACTTCGC------------GGGTCCTT-------GAGAGTCCGTTGG-----AGATCTCCTGGGTGCCC----GGGGAGATGGATGTCCCCAAACACTGTGAGCTACAATAAAATGGGAATGCCTTCCGGCTCCCT-AATCAAGAGCTTCC------------------------TCAGACTCCGGCACCGCCCCTCAGC----CCTGCAAAATGACGCGCTTACCGGTTG--TTTGAATATTTATTTGCATTCGGGAATGGACAGGAGTGGCCTGTA-------CCGAGTAAAGTCAAAGTGCCTGCCAGCGCAGCCCTTCTCCCACGGGAGCGTGAGA-GGCTTTCCACGAAGGCGTCTATCATGGAGGTAGTCTCCCTCGTGGGGGATCCGGAGACCTTTGCTCTGGGAAACT--GCTCTTTGTCAAAGCCGCCCGTGCCGCCTCCGTCCCGAGTCCCAAACCCTGAGCGAACCTTCTCC-----------TGAGGCTGGAGTCGGGTCATATAGGAGAAC---TGGCTCCCCCAAGGTTGAAAGTAGAAGCAGGGGAGGGTGTAGGTGGG----------CGGGAGAGGCAGGCAGGAGGACAGAAGGTCCC--------------GGGGCGAGCT-GCGGCCC-TCGAAGCCCAGCGCACCTCCGCCTAGAGCGCGGCGGGCCTCGGGGAACGGCTGGGGC--CGAGTCAGGCGCGGTAACGCTGGAAGGGCGCCCGGAGC--CGAGGGAGCGGCGGCGC-----CGGGAGGGGTCGGCTGAGGACACTGCCCCGGCCC-GCCCCTGAGGCGT-CTGGGCCAATCAGGAGCCGCCCATGCCCCCCGCCGC----CCGACACCCG--------------GCGGCCTCGGGCGCCAAGGCTCCCCAAACTG--AGGACGCCGCTCGGCGGT-CGGCCTCCCAG-----TCGCAGCGCGGTTCCCGA-----------------------GGGAGGGGGAAGGCGCCCTCCCG----------CCACGCCCCCGCCTCGCGGCAGCCAATCGCAAGAgcccgcccgccgggaccgccct------------------ggccccgccccaccgc-------cgccgccggccTAGAGGCACCCT---CTCCTCCACCCAGCCCCAGGCCCGGCTCGCGTCCAGAGAGCCCGCGCCGGGGGTGGAATTCTTTTTCCTTCAGTAGCTCGCTGGGACTTGGGAAGCAATGCTCGGGCCATGTGGGAGAAGGAAACAGAGGAAACATCCCCAAATTACCATTTTCTCCCGACTGCCTGCGCCTTTCCCGTTAGGACTAAAAAGGCGCCCCCGTGTCTCTTCTGTCTAGAGTCTGAGTTCAAACGAGGTGTAGGGGTG----CAGTAGGAAG---------CAAACACAGAAATAG-ATGAAACAGGCACGCTGCAAACCTGTCCCACCCCCGC---CCTGGTGTGAGTGCTACAGCCCTC----------------CAGCCCC--CCATGCAAGTTAAGCCCCTGTTAGGGAA------------------------------TCAAGGTAGCCTGTGGAACAGTGCCTGAGGCTGTACAACCGTGTTCCCAGCCCTTGAGGGATCTGCCCCTTTTTTTTTTTTTTTGAGGTATTTGCCATTTTTAACCAGGGGCCACCTTCCTCCACCAGGCTGGTTACTCACGACACAGTCCCCTCCCTAAAACCAACGCTGCTACTTCTTTGGCCTGAAGCAGCTAGAGATTAGAAGTTACTATCTGTACCCCTTCTTCTGGACACCCACCAGAAGGGAGATAAGCCCAGGAGAGAGCCAGAACAAAAAAGTGATCCTGGAGCAGAGGTGGGGGCCACTTGAAGGCCC--CAGGAAGAAGGAGGAAGGAAATGAGAGAAGAGTATTATGTCATATTAAATATTTATTGTTTTCTGCAGACTGACCTTGGAGTAACTCTCAAGCCAGGAGAGGTCTTGTTAGTGTTCAAGTTGCTGAGATCTTAGGTCAAAAAGCTACAGAAAAGAAATCACTGAGTGAAAGGGGAAAAAAAAAAATCAATGACTTG------------CCTTGCCACCAATTCCAAGAGTTGAGGCG---TTGCACCTCAGGCCATGGTGACAAG--------AGTTGAGACTGAAACAGTAAAGATTTTACTGGGGGAAGAGAA---CTTGGGTGTGGGGGA------AGGGGTGGTGA--AATCAGGGAAATGATAAAGGC--TTTTGGAAGCCCG-GGGGGAGTGGTCCTGGGAACCC---------------------AAAAACAAGGTGATCCAGCTTATTCTGATGAGGCAGGGTG-------------------AGGCATGTCAAGGACCTGGGAGGCAGGTGGACAACTGTTAAGGAAACCCCAGATGAAGAAGAGTCTGGGATGGGGTACGGAAGTCCATGGAGAAGGCGGGTGGATCCCAGGG-----TCTGGCGCATCAAAAGTTGGGCTTGTGCTTCTTGAGCTCCACCATAAGGTGATGAATGTTGATAAGCTCTGCCCGGGCAGGGAGAGCTCGGAGCTGGGGCTGAGAGAGTACCCGGTGGAAGCGATGATAGAGCTGGATCAGCTGGGTCAAAGCTCCCTGGTCAGAGAAAGTCAT-GAAAGATCAGGCTGTGGAGTGGTGCTAGAGATGGT--------ATCAGG a score=39029 s hg19.chr6_ssto_hap7 4699374 669 + 4928567 AATCAGGTTAGGGCTCATACAGAACTTTGGGCACAGCTAGTAACTGAAGACCAAGGGTCACTTAGATGATGCTGAGCCCAGCAAAAAGATGGGGAAAATAATTAATGATGGGGG----ATCTGAGTGGGGCCTGGGACTTGCAGGTCACCTGAATGATACTGGTGCCATTTCTGAAGTTGGTGAAACTCCGCATTACATCCTGACTCAGAGATTCCACTGATGATTTCCAGGAACTACCAAAGCCACGGATCAGCTGAGTTACCCGGGCTAATAGCAGGAGGAAACAGTG------TCAGAGAGGGATCTGGCT----GATCTTCAACTCCACTAAGTTCTCCCCAAGGTATAGCCATCCTTATCATCAAACCCTCTTTTCTGGTATTCTCTCAATCCAGTCTTTCATACTCTATTCCCCCACCATGTAATCTGCATCCTTTCATTTTTCTTTTCCACTTCCCTTACCACTGATCCCATCA--TTACCATATTTTCCTCATACCTTCTTCCCCTCGAAGTCGCTCAGCCTGTCCACGCTCAATCAAAGCCTCAGCCTCCTTCACAAATGCCACTAAACCCCCAAAAGGGGGAGACAGCAACTCTTCAATGAATTCCTGGAAAGA----CACAAACACATATACACAG----GTGTCCTGGTGTCAGCAGATTTGCCCAATTCTGGCATCATGA s canFam2.chr12 5701605 654 + 75515492 AATCAGGCTAGGGCTCATCCAGAACTTTGGGCAT-GCTGGTAGTTGAAGGTCATGGGTCACCTGGATGATGCTGAGCCCAG-----------AGAAAACAACTAATGATAGGGGTTGGAGGGAAGGGAGGCCTGGAAGCTGCAAGTTACCTGGATGATACTGGTTCCATTTCTGAAGTTGGTGAAACTCCGCATTACATCCTGACTCAGAGACTCCACTGATGATTTCCAGGAACTACCAAAGCCACGGATCAGTTGAGTAACCCGGGCTGATGGCAGGAGCAAAGAGAGAGGGTCTCAGAAAAGGACTTGGCTAGGTGATCTTTAACCCT--TACGTCCTCCCCAAGGCACAGCCCTCTTCCACATCCAATCTCATTTTCC-------------------------TGCTCTACCCCCTCCTCATGGAATCTGCCTCCTCTCATTTTTCTTTTCCACTCCCCTTACCATTAACTCCACCACCTGACCACATCATCTGCATACCTTCTTCCCCTCGAAGTCGCTCAGCCTGTCCACGTTCAATTAAAGCCTCGGCTTCCTTCACAAATGCCACCAGACCCCCAAAAGGGGGAGACAACAACTCTTCAATGAATTCCTGTAGAAATAAGCACACACACATACACATAGTCAAATGTCCTGGTATCAAGACATTTTCCCACTTCTGGCATCATGA a score=9236 s hg19.chr6_ssto_hap7 4700043 224 + 4928567 CTAATGTAGATCCATCTGAATGGCATCTTTCAG--------CTGCTgcaaaagttaaggaaaatcctctatggagaaaaatatcctcaatcctaattttggcccatac-agttcccctggttaagatcaaacaatgaactcaaagatcactagacacaaaagaagggcagctaccaagagagtcagcagacacaataagcaatag----------------------ctgctgaccttaagaactatccgatacg s canFam2.chr12 5702519 254 + 75515492 CTGACATAAATCGAGGTGGATTAGGTCTTTCAGTAATTTGCCTACCgtaaacgcagaggcaaatcctcttgacagaaaaatatcctcaatctcattttaggcccatatgactccccctgattaagacagagcaatgaactcaaagatcgtcagacacatatgaaaggaaactaccatgagaaacagtataaacaataagcaatggacttagactggtataccaaagactgccaacatca-gaactgtcagatacg a score=1315 s hg19.chr6_ssto_hap7 4700268 41 + 4928567 atagcagttgta----ctgtgtgcaatgtctaaag--ttaaggatag s canFam2.chr12 5702965 47 + 75515492 acagcagttgtgagttctgtatgaaacattcaaagaattaaaaatat a score=26978 s hg19.chr6_ssto_hap7 4700608 596 + 4928567 ggatgtaaaaatgaccaattagtaagaactatgaggaatgaacagacttgaaa--aaaggaaattttt----------ttagatatgaaaagcc---agttttagaaagtcaacagatta-----------------ac---aagaattatacaatgaattagaatttataactgaagaaaggactcagaatgtagcacagacagaagatggaaaattttgagatagtaggagatacagaAATCTaattaatgtatctaggcactga-aattgatggctactaacatcacaaagagagccaagaagacattatgtgcttcctgatggaaatacataccactacctctcaaatatccctgtagaaaaaaaaa-------------aactaatttaaatctgaccaagcctttccatctaattacacacttatgagaaatacaccagacagaggaagtttggccacaccatggaatgcagtcagcaaaatctaaactgtac---atcattctag-atgacaaatgactcaataactcagtttcttccaaaaataaattgcagaggag----------atggaagggaaatctatagactaaaaaaagacacatatatggactttatatggatcctgatttgaaccataaaaatcatttatg s canFam2.chr12 5703012 642 + 75515492 agacacaaagatgacgactcaacaaga----tgaggaatggacagacttgaaacaaaatgaaactttcaagagatgacttaaaaattaaaagtctttaattttaaaaagtcaacaggttatacagcagattagaaatacctgaagaatgatacagcaaattgaattttataattgaagaaatgacttaaaatgtagcacagatg--agatgggaaattttgagacattgagggttatggaAATCTagttcatggatgtaggcagtgatcactgatggctattgacag---aaaaggaaccaagaaaccattatgtgccccc-aatggaagtacataccactagctctcaactatccttggggcggggggggcgggggggtgggcaactaactgcaaactgatcaagacttttcatctaactacacatttatggaaaa-------aaagaaaaaagtctagccataccatggaatgcaatctgcaaaatctagactgtattctgttattctaacatgacagatgactcagttacttggtttcttccacagataaattgcagaggaggtaagcaaagatggaagggcactctatagatcacaaagagacatatgtatgtaccatacatggatgttaatttgaactataaaaaccatttatg a score=3614 s hg19.chr6_ssto_hap7 4701510 84 + 4928567 tcacttatgaaataactgggaaaatctgaa---tagttattttagataagataatttttttaa-gtgtgataatgtattgtagttttt s canFam2.chr12 5703853 79 + 75515492 ccatttatga-----ctgagaaaatctgaacactagctctttta----agatcatttttttaaagtgtgataatatattgtgggtttt a score=3601 s hg19.chr6_ssto_hap7 4701771 76 + 4928567 aaaataacattctgatacagatgaagtgataatattcatctgtatatgtataagatttaattcaaagtaactgggg s canFam2.chr12 5704123 62 + 75515492 aaaaacacatcctgacacagatgaaatgatGAT--------------GTATAAGATTTAATCCAAAATAACGGGGG a score=4243 s hg19.chr6_ssto_hap7 4701856 139 + 4928567 ggaggataagcaataggtgttggtatagatgaaacaaaactgtccgtgaactgctatacaccgaatatcactgatgatgcctgggggt-----------------------------tcactatgcttttctAATA-GCATAGTGAAATTTCCCATAATAAAATGTTAA s canFam2.chr12 5704660 167 + 75515492 GAAGGATGAGCAATGGGTGCTGATAGAAA-GGAATAAAACTGTCCCCAAGTACTTACTGATTGAAGATCTGTGATGGTACTTGGGGGTGCGACCCCTGGGAGAGGACCCCAGGGGATCCACTATGCTATTAGTATGTGCAT-TTGAAATCTCCCACAATAAAAAGTTAA a score=3450 s hg19.chr6_ssto_hap7 4702035 78 + 4928567 CATAAAAGCAAACAACCCA-----GACAGAAAGATCTGGTAAGAAGAAAGTGAAATTATTA-------TTCCATTTAAAAATAAATTATT s canFam2.chr12 5705169 89 + 75515492 AATGAAAGCAGA-AACCCAAGCTTGATAGTAAGATCTGGTAGGGTGAAAGTGAAACTTTTAAAACAATTTCCATTTAAAAATAAAATCCT a score=10238 s hg19.chr6_ssto_hap7 4702311 286 + 4928567 TTTTCTATTCTTCCCTCAAAATATTCACTTATATCCACTGAGGGTGTCAAATAACTAATATGCTGCAAGGAAG---------------GATCTTTCTATAATCAAGGCATCTT----TGTGATGTGATTTTGGACAGAGATTAAATAACCAAATTCAACCTATTACAGTTGCCTAAATGCAGTCTCACACACACATATACAAACAATAATGTAGCAGTGTACGGTGGGGCACAGGGAGTAGACTTGCCAAAGAAAAGTTGAACTAACAGTGATGACCCCTGCT--------------------------------AGGCAGGAGCCATAAATTATAT s canFam2.chr12 5705464 321 + 75515492 TTTTCTACTCTTCCCACCAAAAATCCACTTACATCACTGAAGAATGTCCAGTAATTAATATGAGATGGGGAAGACATTCCTAAGAACGGATCTTTCTATAACTGAGGGATCTTCATTTGTAATGTCATTTTGAACAGAGATTAAATAACCAAATTCAACCTATTCCAGTCGCCCAAATGCAATA----ACCCACTTTTA------ACAATATAACAGTG----GGGAGGCACAGGGAATATACTG--CAAAAGGAAGTTCAGCTAAGAGAGATGAGCTGTCCTTTTTTTTCTTTTTTTTGAGAtgagctgtcctaacacagtagccatgactcacat a score=12420 s hg19.chr6_ssto_hap7 4703929 277 + 4928567 AACAAttctttcaaaatcaggaatatgaaaagggttctcactatcacctttctgttcaacttctaaacatcatcctgggagtgttagccagtagaataagaaatcaaaaacataagatgttaaagacaaaaaactagaaaagaTTTATTTATTCCTAGTAGA---------ACTAAACATACGTATTATACCCACCTAAAAATA----TGGCAAACGACTTACAGTGTCTTTGTGCTGAAAATTTAAAAAGGTTATCAAAAGACATTAAAAGACTCTCTTAAAAATTGGA s canFam2.chr12 5706749 290 + 75515492 agcattccctttaaaatcaggaacaggataggggttctcactattacacttctattcaactgctcaacattgtcagagagatcctagccagaacagtagtagatcaaagacgtaagaaactaaagacaaaggattggaaaCTATATATTTACTCCTAGGAGGGTGAAATCTACATAATCTACATATTacatctaactaggaataactctggccaaagatttgcaatgtttttgtgttgaaaattacaaaaggttgcaagaagatattaaagaatatctttaaaaatggga a score=6304 s hg19.chr6_ssto_hap7 4704475 124 + 4928567 AGCCCATGatcatgatcatggataggaagtttcaatatcataaagtatcaattcttccaaattagtcta---tagacaatgtaattctaatcaaaatccttaaagactttttaaaatgtgaaaactT s canFam2.chr12 5707039 120 + 75515492 agcccaagttcatg------gatgagaagattcaacatcataaactatcaattcttcaaaattgatccaaactgatcaatgcaattccaatcaaaatccttaaaagttttttcaa-tgtgaaaactt a score=4231 s hg19.chr6_ssto_hap7 4705298 69 + 4928567 aaaattctacaatattaagaagaaaatgtagcataatatttttctggccttggagtaataaggaatttc s canFam2.chr12 5707517 69 + 75515492 aagattctacaacattaagaagaaaatgtagtataatgtttttctgatgttaggatgatatgagacttt a score=759 s hg19.chr6_ssto_hap7 4705662 29 + 4928567 caggaatttcttaaacaggacaaaaatag s canFam2.chr12 5707987 28 + 75515492 acaagatttcttaaatgagacagaaa-aa a score=2378 s hg19.chr6_ssto_hap7 4705996 74 + 4928567 tgaaggacagat----aaattcaatcatattaaaattacaaatttctttaatcaaaaagcaacattaa-aaaaacaaag s canFam2.chr12 5708015 78 + 75515492 tcaagaaaaaatcagtaaagccaatcacattaaaattaagaatttgtcca-tcatgagacaacataaataaaaataaaa a score=1487 s hg19.chr6_ssto_hap7 4706455 81 + 4928567 tactaaaagataatctgtaacctacgtataatcaacaagattagt---atgtagatgatgcaaagaactcttataaataaaaaa s canFam2.chr12 5708100 78 + 75515492 ctctgaaatata-tctgcaaccta--tacaaccaa-aaaattggtttcataaatatattttaaaaa--ttgtataaatcaaaaa a score=3248 s hg19.chr6_ssto_hap7 4706828 56 + 4928567 acaagccgatttttaaaaggtcaaatgctatgacagccattttacaggaaaaaaAA s canFam2.chr12 5708185 56 + 75515492 acaacccaattttaaaaaggccaaatgctacaacagatattttatggaatagaaaa a score=4458 s hg19.chr6_ssto_hap7 4707425 77 + 4928567 Tatagttactaaacatttgaaatgatgctcaatgttattagtaatcagaaaattacaaataaaacccact---gaaatac s canFam2.chr12 5708246 80 + 75515492 tataactacttaacatttgaaatgatgctcaatttcaatagtaatcagaaaaatgcatataaagacccctaaggagatac a score=16964 s hg19.chr6_ssto_hap7 4707748 394 + 4928567 AAaaaaatggcaaagac---ctgataataccacatgttggagaaaatgtggctcagtaggaattcttacatattgctggtgagaaggaa---------ctacttaggaaaacaatttatcattgtctcataaagactaatactg-catatcttattagcagcaagactactgtcctaggtttatacccaagagaaacttttgatgaagataatcaatatctatgtgtgctaaaagacatgattattcataaaacaatgctcacagaagcaagaaactggaaacaatcc--------atttatag---aatatgtt-taatcacacaa------gtcatatatggcagtgaaaaggaatgagctatagccatatgcaataacatgacaatattagaaaaattatgcatgaaaaaaATCCTGTGATT s canFam2.chr12 5708330 413 + 75515492 accagaatggcaaagatagtttggtaataccatgtgttgtagaaaatatagctcaatgagaattcttacacattgccagtaaagaaaaaactagtataccacttaggaaaactatatggcactgtctcataaggttgaatgctggcaaaccctacaagcaacaag--------ccaagtcctacttccaagagaaactttt-ataaaacttctctccatctacatgcactaaaaaacataactgttcataaaacaactctcacagttgcaaaaaactagaaataatcccaaggtccacttgcaggaaaaaacgttacattcacacaatataaaattatata---aagtaaaaaagaaaaagctgtagccatatgtcataatatgataatgttggaaaaattatgCATGAAAAAAATCCTGTGATT a score=1395 s hg19.chr6_ssto_hap7 4708368 25 + 4928567 GTGTTTATATCATTAAAAAATAAAA s canFam2.chr12 5708743 25 + 75515492 GCTTTTATGTCACTCaagaataaaa a score=65657 s hg19.chr6_ssto_hap7 4711269 1262 + 4928567 AAAATAGACCAATAATGACAGTATGTTGTGAATCAAGAGTTACAGTAATTCCGCATACCTGAGATCCATTA--TGCCACTCCCTacacacacacacacacacacacacacacacacacacacacacacacagagagagagagagagagagagCTGAAAACAGCACAGAAGGCTGTCTCTTCCCTTTTCCCCACACCCCTACCTGTGTCCGAGCATTGAGCAGCTGCTGGAAGCTCTCAACCTCTTTGCTGTCATCTGCAGCCCGCTCCTAAGGGAAGACAAAGGGAAATGTCTAGTTTGGGGAAAGCAGTCCTTCACTTCAGGATGTCCCCttcattccacacttattgtactaagctggacactgtgccagactccaagagtaaaacactgaacaagacaggcatcatctctgccctcacagagctaacag--cagtgggggaaaccgaATTTTCTGGGTAGGAAGGCAAGGAGAAGGAGCACCTATTACCATCAGCACACCCAGCATCATGTCATAGTTGTTGATCAGAAACACAAGCTGCTCCTTCCTTGAGGAGAACTCAGCTGCCACTCGGAGGACAAAATTCTCCACCTCCACCTGAAAAGGCAGAGAGGAAGAGGTGACACCAGAAAGCAAGGTCATCTGGGCCCCATCTGGCTCCTCCTCAGACTCCAC-CCACTGGAAGCAGCCCTGCTGCTGGGAAGTGTCTCCTGTCCGACCCTCACCTGCAGCTGTCCCAGCAATTGCATGGTCCGTTCATTAGGAATTGTCTGGTTGATACTGACAAGAGCGGAGGAGAACTCTGCATAGCGGCGTGTGATCTAGG----AGAGAGTGGGAAGGAAAATCACACCCACCTCCTGGCCCAACCAACACAACCTCCCAACTTCCT------TAGCCAACCCACCTCCATGTGATGTGACTCT-ACCTTCAGTCCCTCCTACCCACAGTGCACCACTCACCATGAGTTTCACCACCCTCCCAGAACACC--------------TGCTCA------TAGCATGGCCCATGACACAACTGTGACCTTGGCCAACCCCCACAATGATGCTTAGAGCCCTGCCTTTCAAGAACCC-TTTGTTACCCTTGCCCTCCCTCACATAGTGGGGCCGAGTATCCAACCCCCCTAGGCGCTGGGGGTCAGTGCTTCGGACGCTCTGAACATTCATCTCCAGGATCAGTTCAAACCGTGGCCATAGCAAGGCAAGCACCTGTTCCCAGTACCTGTGGGCTTAATCAGAATCAGAGGTCAGCCAGCAAGGAATGTTGGAGG s canFam2.chr12 5709122 1209 + 75515492 AAAAAAAACACAAAAGGAAAGGA-------AACCAGTAGTTCCA---ATTCTGGGTACATGAAGCCCTTTACCTGCCACTCCCTAAACACACACACACA--------------------------------------------------GAAGAGAAAATAGCACATGAGACTCTCCCTCTCTTCTTCCCCACCCCCCTACCTGTGTCCGAGCATTGAGCAGCTGCTGGAAACTCTCAACCTCTTTGCTGTCATCTGCAGCCCGCTCCTAAGGGAAGACAAAGGGAAATCTCAAGTGTGGGAGAAGCAGCCCTTGACTTCAGGATATCCCCTTCCTTCCacatttactgtacttggccaggcaatgcgccagatgccaagaataacttacggaacaagacca-----agctctgtcctcacagagcaaacagagcagtgggggaggcCAAACCCTCTGGGTAGGGAGGAAGAGAGAAATAGTGTCTGT-ACCATTAGCACGCCCAGCATCATGTCATAGTTGTTGATCAAAAACACAAGTTGCTCCTTCCTTGAGGAGAACTCAGCTGCCACTCGGAGGACAAAATTCTCCACTTCCACCTGGAAAAGCCAGAAGGAAGAGGTGACATGAGAAGGTGAGGGCACACAG------------CGCTCCTCACACTGCAGGCCACTG-AGGCAGCCCAGCCACTGGGAAGTCTCTCCTGCCC-ACCCTCACCTGTAGCTGTCCTAGCAGCTGCATTGTCCGTTCATTGGGAACTGTCTGATTGATGCTGACAAGAGCAGACGAGAACTCTGCATATCGGCGCGTGATCTTGGGAAAAGAAAAGTGGTAATAAAATCACACCATCCCCCTGACCCAACCAAAGCAATCTTGCAAGTCCCTAGGAGCTGGCCCATCAACCTC-------TGTGACTCCCACCCCCAATCACTATAATAAATGATGCCAAATTCACCCTGAATTCA--CATACTCCTAGACTGCCCCACACACAGAGTGTGCCCCAATATCCAGCCAGGCCCACAACACAACTGGGAACCCGACCAACCCCCATAGTGAAGCT-AGAGCCCTGCCTTTTGGGAACCCCTTTGTTACCCTTGCCCTCTCTCACATAGTGGGGCCGAGTATCCAGCCCCCCTAGCCGCTGAGGGTCAGTGCTTCGGACACTCTGGACATTCATCTCCAGGATCAGCTCAAACCGTGGCCACAGCAAGGCAAGCACTTGCTCCCAGTACCTGCAGACTTAATCAGAATTAGAGATCAGCTGGCAAGAAATGTGAGGAt a score=19857 s hg19.chr6_ssto_hap7 4712531 516 + 4928567 GG---------------GATGGGAGGGAGTGGGGCATCATTCAGTTTAATGGTCAATAGCTAGTTGTGGGGGT----------TGGGGGGCAGTGGTTGGA-------GAAAGGTGAGTCAAAAAGCAGCACTACTGCCTCCGGAGCAAATGAATGGGAATAAAGGTTGATGATACCAGGTCAGTAGGAGTCTAA-GGTCAGGGCAGAGTCATGCAAGACCAAGAGAGTTTGTGGCCTGTTGGGCATCAAGGACCAGAATTCAGTGACCTGTCCAGGGCAGGAACATCCCTCTTTGCTGCAATGTTACGGAACCGGAGAACAATGTGGATACAGAGAAAAACAGCAATGGCATCGTAGCAGTCAGCTAGATAAGAATCCAGGTGTTTCTGTGTGATTGGGGAACAAACAGAGGATTAAAAGAGAATGTCAGTT----TGTTGTCCTCAGTGACTATGAACAAACGCATTTGTTTCTTTGGGGATGATGCACTGGACAGGACAGAAGGGAGAGACGTAAAATGGAACTGCCCCCTGCTTTCCTGTCCAGGATCT s canFam2.chr12 5710441 509 + 75515492 GGCCAAAAAGAAATCTGGGAGGACGGAGGTAGGGTTTC--------------------------TGTGGGGGAACCCAGCTGATGGCTGATGGAGGTTGGACTAGTATGAATGGTGAGGCAGAAAGCAG---TACTGTCCCCAG-GCAGATGAACGGGAGTAAGAGTCA--GGTGTCAGGTCAGCAGCAGCCCAATGGTCAGAACAGGACCATGTAAAGCCAAGGG--TTCAAGAGCAATGGGGCATCAAGGACCAGAACTCAGTGACCTGTCCAGGGCAGGAACATCCCTCTTCGCTGCAATGTTACGGAACCGGAGGACGATGTGGATACAGAGAAAAACAGCAATGGCATCGTAGCAGTCCGTGAGATAGGACTCCAGGTGTTTCTACG--ATTCAGGGATAGA---AGAATTGGAAAAGAGCGTTCGTTATTCTGTCATTCCTAGTGGCTACAGACAAATGCATGTACTCCTCTGGGGATGCAGCCCTGGGAGGGAGGGTAGGGAGCT-CTCA----GGAAATGCCTCCTCCTTCCCTGTCCACTAGCC a score=8350 s hg19.chr6_ssto_hap7 4713658 169 + 4928567 ACCAGGATCTATGATCACAAGCCTATCACAGCAGAGTTCAGGGCTGAGCTTGGGTCAGGGGTTTGAGCACCAAGATTTGGGGGACCCTCAGTTTTCACGTGCTATTGCCTGATTGTGGGTCAGCAGTAGGGGTAGTCTCAGGGACCCTACGCACTGAGGATTTCATGGG s canFam2.chr12 5710976 147 + 75515492 ATCAGGATTTAAGATCACAAGCCCATCACAGCAGAATTCAGGGCTGAGC-------------------ACCAT--TTCAGGGGCCCCTCCGTTTTCAGATGCTACTGCCTGGCTATGGGTCAGTAGTAGGGGTA-CCTCAGGGACCCCAAGCTTTGAGGGTTTCATATG a score=222564 s hg19.chr6_ssto_hap7 4714414 4083 + 4928567 AAGGCTTAGACATTTTAGAATGAGGCGAT-CCTGATTTCAGTTCTACCAGAGTCATGACCCCACTATGCTGCTGATGAAGACTGGGGACAAAGGTGTTGAATGGTACAGGAAACAGGAGTCTTACCAGGGTCATGCTGAGTGTACGGCCCATGACAGCATGGAACAGGTCGTGTGCAGCTGGGCCAGACACAACAAAAAATTCACAGATGAAAAGGTATTCGCGGCAGGAATTGTCTAGGAGGGCGTAGTGCTGGCTGCGGAAGAGGGCCTCAAATGGATACTGGGAGAGGAGGAGTAAAGAAGAAAAACAGAAGGGATGGACCCCAACACTGACTTCCCATGGATATGGCTGGAAAATCAGTAAACCTGAGTAATAAGAGCTAGGCAGACCCTTCGCATCT-ATCTAGGTCCGGGCTGTCTAAGAGCAAGCTGAATGGGCACTGAAA-AGGTGGGGGAACATAGGGGTACA--AAAAGGGCCTACACCCACCTGCTGTTGCTACTCCTGCATCCACCTCAAC-ACCTGCCTCTGACTGTCATTCCCCTCATCCAGTCTCTCCCCTCTGCATGCCCTTAAGTCAATGGTTCCCAGCTCTTTTCACATCACAGCAGGCTGGAGTGATTGGAGAAGGCCACTCCCAAGTCTAAGGGGATTAAGACA-GGGCCTGCAGGTTGGGAAGCTCTGCCCTGAGGTCTGGCCTTCCCTCCCCACCGTGCTCAGAGCCTCTTTCGTGACTGAAGCTTGTTCCTCCTCATACCCTCTGCTCTCCGCGCTGCGCTGTGTGAGGCACCAGGATGGGGGCCTCAAGTTCAGTGGGGGAGATGACAGAGCCGCGGGTTCCTAGGGTGAAAATGGTGTTCCTGCTGCGGAGCGATGGCTTTGAGAAGAATCGTAAGATGGGTCAGAGTCAGGGAAAACAATGAGACCATAACTG-----GGCCCAAAGACTCACTATCTGTGGGGACCCCAGACAGGCAGACGTGGCCTAGCCAGCCCTCTTTCCCAGTACTAGGGCCCCACGT--Gctgacatctgtgaatgggcttcagggtgtctctccctcccttgcaatcatatgcaaaactatgtgtcaaaataatgtgtgcatctttct-------ggggagggaggctatagctttcatcacattctaaaaggtttcagtcccataggaaaaggtaaggagcAGTGCATTGGTGGCTGGAGTCGAAAGTCCTCCCACTCTCAAGGCCTGGCATGAGGGTTCCCCAGTACTAGGATATCTTTCTTTGCTGTATCTTCCACACCCATTAGATCATCTTTCTCAGCGACTTCCTCATACTAAG---GAAAGAGAAAAGAGAACTGATAACCGTCTCTTCCCACAACACAATAAAATATT-----------------CCTTGCCCAGGGATGTCCCCTCCTCCCAGTCCATGTGCCCAGGAATACCTCTCCCTCCTGACCTTACCTGCACCTTCATGAGCCGCCCCAGGTAAGAGCGGTAGTAAGACAGGTAAATCTTGCTCAGCGTCTCCACATATTCATCCCTGATCTCCTTTGCTGTTGCTCGTTCATTGCCCAACAGAAACTGATAGAAGAACCTAG-GGGGTCAGGAACATGTCAGTCTACCTGTCT--CCCAAGAAACCAGATGCCCACACTAGGCCGCTCAAAAACTCAAAGGCCATCCCATGCACTTCCTTGGGGTTGTGACCTGTACTTCAGCAGGGCCGTCTGGGGGATCTGATAGTTGGTCATGGGTTTCCTGAAGGAATAAATCTTCTGGAGGATAAACTCTCGGATCTTCGTCACTGCCTAGATGTGG-----GGAACCAAACACAGGGCATGAAGCTGCAACCCTTTTGCTGTATGAGAGGAACTGGGGGAAGCAACAAATGGTAAACATAGGCAGA---AGGGTGGTGAATATCTCTTTGGTATTTCTCAAGATTTTCAGGGAAACCCAGAGAGACAAGAATGGGGCTGCCCAGAAAAGGCAGGGTGAAGTCCCTGGAGACAGGCTACAGTGAGCTCTGCCAAGGAAATCCATAGTGAAGATCTTGGGAAGGCTGCTTCCAGTAGCCTCCAGGGTATCCATCCCTACTTCCCACCTTGACCCGGAGCCGATCGAGCACGCCTCTGACATCTGCGCAGGCTGCTGTGCCTCTAGCTTCCTGCTCTCTGACTGCGGCTGCCTTGGCATCCAGCTCCTGTAGCTGCTCCAAGAACCTGGGCTCTGTCACTGGAGCCTCCAGAATTGCCCTGGTTAGCAGGGAGGGGTGGGATGAGTTACA--AGGGAGACCCAGACATCCCTAAACCAGACCCAGACCACACTCCTTACCTCCAGCCCCTGTCATCTCTACCACCTTGCATTGTACCATATAGTCAGGACACATGTACAAAGTTTTCTATTCCTGG----------------------------------ACCTCCCCACTATACACCTGATCT---TACATCATTCT---TAATCTTAATCTTTGATGCCTAATGCATACCTAAAGAAATGGTGGTTAACCTGGCTACTAATTTCTAAAAAGCACTTAAC---CTGGAGCCAGGAGACCCATATGGTAAATAGGGTGGGTCACCCCAGCCCATCCACCTGCTATGGACATTATAACCCTTCAAACTGGTAACTCACGTGACCAGAGCAGAAGGCACCACCAGACCATCAACAAGCTCCCCAAGTTTCCCCCGAACTGCCTGGCGATTTCGAAGTCGAATGTTCATGGCTCCTGACTGTTCCTGCAGTGTCCGGATCTCAGAGCTGATGGAGCTGAGGTCACTCTGAAAAGCTCCCAACATCTGCTCCATTCGCTGTAGGGAGG---GTAGATGTTGCCGGAGTGCTATAGGGTTTGTAGGGGATAAGTGGGCCACCAAAGACTCTTTGTGAAGTCTTCAGTATTTATCAGTCCTTGAGGGTGGCAGATGAT----GAGACACCC--CAGATTATCAGGAAATAACATTAAATATGGCAGTAATAACAAAAAAGGCTCCTGAAGTCATCTTGAAAATGACCCTAACCTGTCCCCATCTTGAGGCTGATGACCTAAA-AATGGCACCAGAGTCCATGATCTGGTTCAGAGTAGCTATTAGGGGTCACAGGTCATGATTACTAACCTCCAGGACAGCATCACAGGCTGTGATCTGGTTGTGTAGAGATGCTATATTCTCACTCTCTTGAATATCTGATCCACAAAAAGTCAAGGGGCCTCATGGTGAAGATGGGAGATCCTCAGATTTGTAGTACCTCTCCAATTTCTCTTTGAAGTGATAGAAACCTC-----AGAGATGTTGACCCCAGCTGGGACATCTGTACCACACGCCACAAAATCCCCATGTCAATAGCACCACCCCTTCCCTCTGCTGGAGGATACAATCCCGAATGGATTTCTGTTCAATCTGCTGTAGCTCCAGCTCAACTTGCTTTGAATAGTGACGGAGATCTACACCCTGGGAGAACATAAAGATGACAGGTCAGAAGGAAGTCTCAGTAAAGGGACACTGTAACAGAATCAGTGAAGGACTAAAGGGTCAGATACCAGGCTGATACAACAAAAGCAAGAGACTGTTGTTTTT-----CCTTTTGGGGTAGAATAGATAGAAGGGCAGATTAGTACAGGGGAAAGCCTCACCGTTTTAAGAGCTTCCTTTACTAACTCATCCTCCAGATTTGCCTGAATGTGAACTGGAAATAGAAGTTTATCATAAGGGTCCAGCTCCACAGCTCCCTCTCCCCACATTGAGTATCTGCACACCAATCCCTACCTTATTCCTTCCAGCCCCCATGCCTCTCAGATTACAGGTA--CTGCACCCACCCCATGCCATCGCTTACCATCCACTTCATCCAGGATGAATTCATCAGAAGTGATATCCAACTCCCCAAGTTGCAGTGGTTCCTGGAGCCCAGGACCACCCGCCTGGAAAGGGATAAGTTAATGGGAGTAGGGTACGGT--GAAAGACAGAAAGAAAAAATATAATTGGAT-ATCCCCAGTCCTTCAAG---TGAGAA----GGAGCT-------GCTTTTACTGGG-AGCCACAGGTACTGCTTTGAAAAATTCTAAGAGTCTCACGTTGTACCCACTCTCCTATTTTGTGCTGATGGGTAAGGAATACGACAAGGAGTGAGACGATCCAGTGAGACAGTGGAGGTAGCCCA s canFam2.chr12 5711135 4105 + 75515492 AAGGCTTAGACATTTTAGAATTAGGGGGGGCCTGGTTTCAGTACTACCAGAGCTATGACCCC-CTACAGTGCTGCAGAGGACTGAGGACAAAGGGGTCTAAGAGCACAGGAGCTGGGGATCTTACCAGGGTCATGCCAAGGGTGCGACCCATGACAGCATGGAAGAGATCATGTGCAGCCGAGCCGGATACAACAAAGAATTCGCAGATGAAAAGATATTCACGGCAAGAATTGTCTAGGAGGGCGTAGTGCTGGCTGCGGAAGAGGGCCTCAAATGGATACTAGGATGGGAGAGGTGAAGAAGAGGGACAGAAGGGATGGACCCCAATGCTGACTCTCCATAGATATTGCTGGAAAATCAGCAAGCCTGGGTAACGAGAGCT---CAGGTCTTTCCCATCTAACCCAGGTGCAGGCTGTGAAGGAGCATCCTGAATGGGTACTGAAAGGGGTAGAGGGACG-AGGGGCTCAAGAGAAGAACCCACCCCCACCTGCTGTTATTGCAC---CACCCAACTCTACAACCTACCCCAAGATG---TTCCCTTCAGCCAATCTCT-CTCTATATATGTCCTGAAGTCAACGG-TCTCAACCCTCTTCACATCACAGAACACTTGGGTGATCCAAGAAGGTCATTCCCCGTTCTAAGGGGATTGATACAGGGGACTGCAGGGCGGGAAGCTTTGCCCAGAGGTCTGGCCTCTCCTACCCA---TGCCCAGCACA-CCCTCATGACTGACTCTCATCCCTTCTCCTACCCTCTGTTCTCCCCGCTGGGCAGTGTGGGGCACCAGGATGGGGGCCTCCAGTTCAGTGGGGGAGATGACAGAGCCACGGGTCCCCAGGGTGAAGATGGTGTTCCTGCTGCGGAGGGAAGGCTTTGAGAAGAATCGTAAA--GGATCAGAGTCAGGGAAAACAACTAGATCACAATGGTGACAGACTCAGAGGCTCATTACCTCCAGGGACCGCAGGCAGCCAGACACAGCCTAGATGTCCCTCCTTCCCAGTACCTTGGCCCCACTTCATCTGACACCCGGGAACGGGCTTCAGAGAGCTCCTACCCTCCCTGCCATCACATGTAGAACTATGTGTCAAAAGGATGCATGCCTTTTTCGGGCGGCAGGGGGGGAGGGGGATAGCCATTATCACATTCTCAAAGGTTTTGGTCCCAGAGAAAAAGACAAGAAGCAGTGCCTTTGAGGC-------------ACTGTCACTATCAAGGCCTACTACGTGGGTTCCTCAGTTCTAGGATATCTTTCTTTGCTGTGTCTTCCACACCCATTAGATCATCCTTCTCGGCAACTTCCTCATACTAAGAAAAAAAGAGAAAAGGGAACCAGTAAGCATCTCCTCCCCTGTTGTGATAAAACAATTTTTCCCCACTGTCCAGCCCTGCCTGGGGGTGGCCCCTCTTCCC---CAAT---CCTAGCCATGCCTC-CCTCCTTGGCCTCACCTGCACTTTCATGAGCCGCCCTAGGTAAGAGCGATAGTAAGACAGGTAGATCTTGCTCAGCGTTTCCACATACTCATCCCTGATTTCCTTTGCCGTTGCCCGTTCATTGCCCAGCAGAAACTGGTAGAAGAACCTGGAGAGGCCAGGGACAAGTCAGTCTCCCCACCTTCCCCAAGAAAGCAGAC-CCCTCACCAGGCTGACTGATGGCCCAGAGGCCATGCTGAGCCTTTCCTTTGGGCACTGACCTGTACTTGAGCAGGGCCGTCTGGGGGATCTGATAGTTGGTCATTGGTTTTCTGAAGGAATAAATCTTCTGAAGGATGAACTCTCGGATCTTCGTCACCGCCTGGACATGGGGGGAGGAAACAAACACAGGGCATGAAGCTGCAACCTTATGACTGTTATGGAAATGGTGGGGGGAGGGTCACATTTCAAATACAGGAGGATGGAGGTTGGAGAAGACCTCATCAGTATTTCTGAAAGTGTTCAGGGGAACCTAGAGATGTGAAGATGAGCTCTGCCAGTAAAGGCAGGGTGAAATTCTTGGGGATGGGCTACAGTGAGCGCTGCTGGGGAAACCCAGGTTGAAGGTGTCAGGGAGGCTGGTTCTAGTAATCTTGGGGGTAT-CATCCCCACCCCTCACCTTCACCCGTAGCCGGTCAAGTATGCCTCTGACATCAGCACAAGCCGCTGTGCCTCTAGCCTCCTGCTCTCGGACTGCAGCCGCCTTGGCATCCAGTTCCTGCAGCTGCTCCAGGAACCTAGGCTCTGTCACTGGTGCCTCCAGAATTGCCCTGGGTAGCAGGGACAGGTGGAAGGGGTTATAGGAGGGAGACCCAGACATCAGTA----GGTCCCAAACTATATTCCTTACATCCAG--CCTGTCACCTCTCCCTTCACACGCTAAGTCACATAGTCAGGATACGTGTACAAAGTCTCCTGTTCCTGGAATCTCCCCCAGTCCCACGTCCATAAAGCCTTAAACCTCCCAACTAAACCTCCCAACTAAATGCCTGACTCTGGATATTCCTAATCTTTGATGCCTAAAGCATGCATCAAGGTTGAGTTGTCAACC-ACCCATCAGTTTCTGGAAGGTGCTTGAAGAGCTGAGGCCAGGAGACCCATGTGGTA---------GGTCATCCTAGACCATCTACCTGCTATAGACATTGTAACTCTTCAAAATGGCAACTTACATGATCAGAGCAGAGGGCACTATCAGACCATCGACAAGTTCCCCAAGTTTTCCCCGAACTGCCTGGCGGTTTCGAAGCCGAATATTCATGGCTCCTGACTGTTCCTGCAGTGTCCGGATCTCAGAGCTAATAGAGCTGAGGTCACTCTGAAAAGCTCCCAACATCTGCTCCATGCGCTGGGGGGAGGACAGAAGATGTTGTTGGAGCACCAAAGGGTTGGCAAGGGACAAATGGGCCACCTAAGTTTATTGGTAAAGTCTTCAG----TATCAGTCCTCGAAGGTAGGTGATGAGGTAAGAAGTACCCAAAAGGTCACTGGCAAATAACATTAGTTATGGCAGTAGCAACAAAAAGGTCTGCTAAGGTCATCCTGAACGTGAATCTAA-CTATCCCCA-CCTGAGGATGATGACTTAAAGAACAACACCAGA--CCATGATCTGGTTCAGGGT---TAAGAGGGATCACAGGTCATGGTTACTAACCTCAAGAACAGCATCGCAGGCTGTGATCTGGTTGTGGAGAGACGCTATGTTCTCACTCTCCTGGATATCTAATCCACAAAAAGTCAAGGGGCCTCACCATAAAGCT-GGAGATTCTCAGACCTGTGGGACTATTCCCATTTTTCCCAGAGATGACAGAAACTGCCATGAGAAGATGTCAGCCCCTGCTGGGCTGCATGCACCATGCTCCGCAAAATCTCTATTTTAATAACATCACCCTTTTTCTCTACTGGAGGATACAATCTCGAATGGATTTCTGCTCAATCTGCTGTAGTTCCAGCTCAACCTGCTTTGAATAGTGACGGAGATCCACACCCTAGGGGAACATTAACACAACAGGTTAAGAGGAAGTGGCAGTGAAGAGACCCTAGAA-AGAATCAATAAAGGACTAGAAGGTGAGACACCAGGGTGATGTTGTAAGAGTGAGAGACTGTCCTTTTTTTTCCTCTTTGAGGGGAGGGTAAGAGGAGGGATAAATCAGTACAGCAGAAAGCCTCACCGTTTTAAGAGCTTCCTTTACTAACTCATCCTCCAGATTTGCCTGAATGTGAACTGGAAATAGAAATTTATCATAAGGGTCCAGCTC-------------CCGCAAA-CGAACATCTGTACACCATTCCCCACCTTATTACTTCCAG-CACCATACCTCTTGGATCACAAGCAGTTTGCATCCACCTCATGCCATCACTTACCATCCACTTCATCCAGAATAAATTCATCAGAGGAGATGTCCAATTCTCCAAGTGGCAATGGCTCCTGAAGACCAGGGCCACCCCCCTGGAGAGGGACAAGTCAACAGGAA-AGGGCACAGTAAGAGAGAGAGAGAGAACAAATATAACGGGATAATCCACAGACCTTCAAGGTTTGGGGAAGGTGGGGCTGGGCTGGGTTTTTATTGGGAAGCCATGGGCACTGGGTCAAAAAATTCCAAAAGTCTCACACTGTCCCCAATCTGCTATTTGGGGCTCCTAGGTAGGGAATATAACAAAAAG-----------------------------ACTCA a score=93013 s hg19.chr6_ssto_hap7 4718961 2583 + 4928567 GAGATGACCGAATGAGGAAAGCTAGGAATTGCAGAGGATAGAGCAGAACTTGCACTTAAATTTAAGACCCTCAGACTCCTGCCATCTTGGGTGTTCTATCACA---CCTCTGGGGAACCCCAGGCTTTCTAGAAATGTCAAAACACATagtgtttacctgcatgccaggtgcaatct----tacacatattcatctaatcctaa-cgacgatgtatacaataggttct----atcttcctcaccttaaaggtgtgagaaatgatggcacagagaagctggttaacttgcccaagggcacacagcgtgtaagtggcagaga------tagaactcaggcagtctggcttcagaggccatgttcttaacctttacactatactACTTCGTGACTCTACCCCAAAATGTGGAGTGAAGTTGAAATTTTGTGCCCCAGAACATGAGTTTCAGCCACTAGGG-TCCCGCTCAGGGTCGGGTCTGATCACAGGGAAGGGTACGGGGAGCCAAACAGGTAATATCACGGGTAGCAGCCAAGTTCCCACCCTTGTGCCTAAACCCAGCTCAGGTCTTTCTGAAGCTAGGAGCACCGGA----ACTACGGAGGAGAAACAGCTCCGCGCTCTCACCAGCGGGCCCTCTTCCTCCTCCATATCTGAGGTCCCAGCCCGCAACACCAGTTCCCGGGCCGCAGCCGCCATGGTCGCAGCGGCGGCCATTCCCCGCAGCCTCACTTCCGGCAACTGT-CAGTCCCGGCGAGTCCGTTCCCCGGAGTGGAGCTACAAGTCCCAAAGGGTCTTCCTCAGCGCGAAATCGTTCCCAGATATTTGAGTTAAGTTGTTTGACTCCAGCTGTCCCCTTTCAGCTCTAACCACTTCACCCAACTGCAAATGGAAATATGGAAGTCTGAAACACAAACTAGCCCCGGAACCTTCGCTGTTCTCTTACCTATGAACCTTACGAAC-TGTAAAGAAAGG-CGCACCGGAAGTTGTGGTACCCAAGCCATACTCTCATAAATCCAGCCAGGTCGCGCTGAAACAGTTTCCGGAAGCACTTCTCCTAGATCGCACCGCCTCTTCCTCCTGGAAGCTATATAATGATATCGCGTCACTTCCGCTCTCTCTTCCACAGGAGGCCTACACGCCGCCGCTTGTGCTGCAGCCATGGTAAGACTGGAATCCGTGCCGTGATCCAGCGGCATCGCAGCTCGGGCAAGGAAAGCCGGCTGTCAGGGTTCTGGAAACGTCCTGCCCTGAGGGCCTGCGACTTTCTGTATGGAGCCTTGGATCGCGTCCCTGGAAAGGGAC-ACCAAAGATTTCCAATTCCGGAGAGCGGGCCCGAGGAAGGGTCACTGCTCGGGCGCACGAAAGCTGT-CTAAGGCTTGGGCGTATATGGGGAACTCTGGCTTTTGCCAC-----GCACTTTTGGGAATGGGCAGGAGACCTGCTTCCTCTCTCCAGAGGTTGCATTTTCCCAAGCTTGAACGCTTCATGTGCCTACTCTGCAGGACTGAGGAGTTTGCTCTGTGGTGTGAAAACCTAAGGAATGGGGGGCGGGTGTCTTGCCACTTGTGTGACAGGCTTAACCTTTTTGTATGAAGTTCGTTTGCCTTATCGGCCTTACTGTTTGA---TAGTTTACTGTGTCTGATTTCTTCCCCCGTACTTTTTCAACTAGTCTCTAGTGATCCCTGAAAAGTTCCAGCATATTTTGCGAGTACTCAACACCAACATCGATGGGCGGCGGAAAATAGCCTTTGCCATCACTGCCATTAAGGTAAGTGAAGTAGGGTAAGGAATAGGGAATGTAAATGAGAATTGGGTTGTGAAGACATAAGCAAAAATGAAGCAAGGCTGGGGAGACTTGAGTCTCATCCAGATCACCTTGACTGCTGGATTAAGAAAAGAAAGTGGTTTAGGGAGAGACTGACCCCTT---------TAGCATTTACCACAGAAAATAAGTGATTAAAGCCAAGATAGTGGTCTAAGGTCAAGCCAAAACATTTCACCTGGGGAAGTGGGGAGGAGGTATGGTTGCTCACCCGAATTCGCTAAGATTTTCCTGAACCACGAGCT----------TGTGAGATTTCTTCTAGATTCGGTTTCT--TTACCCATCCCAC-------CATCATAACAGCAACCCTTCCTGCGAAATTTATATTCCCTGAGAATTGGAGGATTATTGGGCATCTTGAGGGATAAGTAGAAATACCAACAGA-TAAAAAGTGTGAAGAAGCCTGTAGATGGAGGGTGGAAGAAGTCTGAGTG------GGAC---ATTTACTCAGATG--------AGCCATAATTGACACTCCTTTCCTGTCGAAGTGTGAAGGAGTACATCCATCTTTCTTTGGCTT---TTAAGAATCGAATAAATGAATGCAAGAATATTATTTCACTTGAGTATTTCTCTCCACAAACCTAATGAATTCCTGGCTTTGTAGATA----CATAACGTTCTTTTTTTTTTCCTTAAGTCAGAATGTGTAGTTAGTTGTGGAAATAG-----------CCTACCAGTATGTGT---CCATGCGTGCAGGGCTAGG------------------------------CCTGTCTTCTT----------GGCTTCTGTTGCATGGTAGGTACTTAGGCGACGTTAGGGAATGGATAGTAGTAGGGATACTGTTGGCT-CTGTTGAGGAATTTGTAGAGGGAA s canFam2.chr12 5715240 2562 + 75515492 AAAGTCACCACAAGAGTAAAG-GAGGAGTTGCAGAGGACAGGGCTAAACTTACAGCTGAGTGTAGGATCCCCAGACTCCTGCTATCTTAGGTGTTCTATCACAATCCCTGTGGGGATCACCTGCCCTTCTAGAAATGTC--AGCTAACagtgtttacctgcgggccaggtgccatttttcatacattcattcatctaatcataaccaacaatttctacggtgaagtcttatcatttccttcaccttatacgtg-gggaaagtataacacagagaaactgattaacccgcccaacgacacacagcgtgcaagaggcaaagctggaattagaacccaggcgatctgaccata---gtcacgttcttaacctttacactatactgCCGCTGTATTCTGCCCTCAGATCTGGAAGTTAACTGAAATTCTGC-CACTGGCACCTGAG--TCGGCCATTCTGACTCCAGGGCAGACTCAGACCCGACTCCAAGGACGGATACGGAAAAACACACAGGGAGCATCACCGTTAACAGCCGCTCGCCCACTCTTCTGCCTAAACCCAGCCCAGGCCCTTCTGACGCGAGGACCCCCGGACAAGACTCCGGA-GAGAAAGAGCCCCACGTCCGCACCAGCGGGCCCTCCTCCTCCTCCATATCCGAGGTCCCGGCTCTCAGCAGCAGCTCTCGCGCAGCCGCCGCCATGGTCGCAGCAGCTGCCATTCTGCGTAGCCTCACTTCCGGCAGCTGTCCAGTCGCCGTAGGTCCG-TCCCTGGGGTGGACCTACAAATCCTAGAGGGTCTTGCAGAGAGCGAAATCGTTCCCAGATATTTGAATTAAGTTGTTGGACTCCAGCCTTCCCCTTTCAGCCCTAACCACTTGACCCAACTGCAAATGGGAAC-TGGATATCTGAAGCACAATCGCACCCCGGAACCTTTGCTGCTCTCCCTCTTAAGGACTTTACGAACATGTAAAGAGAGGCCGCACCGGAAGTTCTGGTAAAGAAGAGAGATTCTCAT-AGTTGAATTAGTTCTGGCACCAGCGGCTTCCGGAAGCGCTCCTGCGTGATCGCTCCGCCTCTTCCG-CTGATAGCTATATAAGCCTAGTATGTCACTTCCGTTCTCTCTTCCACGGGAGGCCCGCACGCCGCTGCAGAGGCTGCTGCCATGGTAAGAGTGGATTTCGTGCGGGGATCCGGCGACATCGGAACCGGGACACGGAAAGTCTGCTGTTAGGGATCAGAAAACGCCCTGTTTTAGGGGTTAGCAACTTTCTGTGTGAATCTTTGGAGCGCACCCCTGGGAAGGAATGACTGAGGACTTCCAGTTCTGTGGAGTAGGCCAGAGGAAGAGTCACT-----------CGAAACCGGCGAAAAGGCTTGGGCGTGAATGGGGACCTGAGGTCTCCGCCTCTCAGTGTACTTTTGGGAACGGGCAGAAGACTTGCCCCCTC---CCAGAGGTTGCGTTTTCCCGAGCTTGAACACTTAAGGT--TTTGCGAGCGGGACTGAA---------------------------------GGGGGGAGGGT-TGTTGCTCCCGGTGTGACAACCCGGACGTT--------------------CCTCTTGACATTACTGTTTGATGGTGGTTGACGGTGTCCTGTTTCTCCCCCTG-----TCTCTGCCAGTCTCTAGTGATCCCTGAGAAGTTCCAGCACATTTTGCGAGTACTTAACACCAATATCGATGGGCGGCGGAAAATAGCCTTTGCCATCACAGCAATTAAGGTAAG----GTAGGGTAAGGAACGGAGCCTGTAAATGAGACAGG------------ATAGCTGTAAGTGAGGAAGGGTCCAGGAGACAT--GTCCCAACCAGATCACCTTAGCTGCTGGGTAAACTAAAGAA--CGGTTAAAAGAGTGACTAGTCCTCTGGTCTCTTACATCATTTCCACCAAAAGGTAAGTAATGAAAGCC-AGAGAAGAGTCGCACATCAAGCCAAGATACTCT--------AGATGGGGAGTGGGTTCCCTCGGCTTCTAGAATTCACTAAAAGTTTGTTGGACCGTCACCTGTTGTCATCCTGTGAAGTTCGTTCTAGGTTTGGTTTCTGCTTCTGCTCCCCACTGCAGAGCATCGTGACAGCTACCCTTCCTGTG--ACCTACATGCCCTAGAAATTTTGTAATCAT------ACATGGTGGGT-AGTCGAAATGCCAACAGACTGCCAAGTGTGAAGAAACCTATAGTTAGGAAGTGGGAGGAGTATCATTACATCGTGAACAGTATTTATTCCAATGTCAGAGGTGAATACAATGCATTTCCCCTTTCTACCTCAT-----AGGAA-----CCATCGGTATTTGGCTCATATTATGCCTTAGGTCGGTGAGCATAAG------------TTTGGGTGTTTTCTTTCACTGACCTAATGAA---CTGGCCTTCCAGTTGGGGTCATTCCA-TCATTTTGTTTTGTTTTTGTTAGTATATG----TAATTGTGGATATGGTTGAATGTGGTTTTGCCAGTGTGTGGACACCGTGGGAGCAGGGATAGACAGGGATAGAACTGAACAAAACGGGGTAGTCCTATTTTGTTCACAGTTCCcagctcctggtgcataataggtgctcatgaaatgttA-GAAATGGATC----CAGGGATGCTGTAGCCTGGTTTCAAAGAATT--TAAAGGAAA a score=3214 s hg19.chr6_ssto_hap7 4721545 86 + 4928567 TTCCTTCTGTTGGGTGCTCTGTGAAACTAATAAGGCAGTGTGAAATACTGTACTTATTTCAGAGACCGGCTGTGAGGCTTAAGTAG s canFam2.chr12 5717944 79 + 75515492 TTTTTTCTGTT------TTTTTGAAACTAGTAAGGCAATATAAAATATACTAGTACTTTTAAAGATT-GCTATGAGGCTTAAATGG a score=3606 s hg19.chr6_ssto_hap7 4721637 107 + 4928567 AGCATTCATAAGTGTAATAGAGAA---TAACCTTCATGGATGT-ATCTAACTAAAAATTAGAAATCTTATTTCATCTATATCTCTTCCCACACCCATTTTGAAGTAAATCT s canFam2.chr12 5719660 105 + 75515492 aacgtttgaaagtagagggaagaaaattagcccctatgaatatcacctagctaaaaacttgcaatcttgtttcatctatatt------cactatcatttaaaagtaaatct a score=1980 s hg19.chr6_ssto_hap7 4721892 48 + 4928567 AAGA-CCCTGCTCTCTTCTGAATCAACCTAATAATTTGACC--CTTGGTCA s canFam2.chr12 5720144 50 + 75515492 AAGAGACCTAATCTCTTCTGAATCAACCTG-TAATTTGATTTTCTAGGTCA a score=14775 s hg19.chr6_ssto_hap7 4722468 604 + 4928567 CTTGATCTCTTTCTTGCAGATAGGAACTGCCATTTGTTTTAGTTTCCTGGAGCCTACTGTAACAAGTTCATATAAACT----------AAGCAG--AAAATTACTCTTGGCGCTGGAGGC---ACTTAagaatccta-------------ccttgcctct-------tcctgtcttctggtggttgtca------gtaatccttagtgttccttggcttgtagctgcattactccaatctgttgctgtcatctcatggtcctct---tcgtgtCTCTCTCATG----------ATTTGTCattggatctagagcccaccctaatcaaatataacgtcattttacctaattatttccgtaacgaccttatttccaaatagggccacattctgatgttctagTTGGACAAAATGAGG--GGCAGGGCTCAGTATTCAGT--------TCCTCCTTCACTCTCCAAATCACTTTGGTTCATGAGTTCAGATGGCATGG-GTGCTAGTGCTGGTGTTGATGTGATGCTACCAATGTAAGCATTAGTTTCTTTTTATAATAACTTGGGCA-------------------GTCAGTTCTGGGCACTGACAAAATTGAGTTTGTGATCTTGGAATACT-TTGATTATGGGGATACAGTGATTTGCCTAAATAATTGTGACCCTTAGAGATTCTGAG s canFam2.chr12 5720359 659 + 75515492 CTAGGTCACTTT-TTACACAGAGGAA-----ATATCTCTCCAtttcttg-aggctgctgaaacaagttaccacagacttgttggtttaaaacaacaaaaactac-catagttctggatgccaaacatagaaaatcaaagtgtcagcaaggccatgctcttctgggaatcctatgttctggtggctgtcacccaaggttatcctttctgttgctt--ttgttagctgcatca----------tttctcctatcacatggccttctactttgtgtc-ctctccttttaaaaagataccagatattggattcggggcctgtcataatccagtgtaacctcactgtaactaattatatttgcaatggccctatt-------aaggtcacatcctgggattctagATGGACCTGTTGGGGTAGGTGGGCAGTACTATTCAACCCAGCACATCATTCTTCACAATTCATGTGTGTTTTCTTCATGAGTTCAGGTAGCAAGGAGAACTGGTATTGGTGCTGACA--GTGCCACCAGTTTAAGCATTAGTTCCTTTTCAGTTTCGTTTGGGCACTTAGCTCCCTTTTCCCTGGTCATCTCCGGACACTGACAAAATCAAGTTTGTGATCTTGGGAAACTGTTCATGATGGCGATGGGGTGATCTGCCCAAAGAATTATGACCTTTACAGACCCAGAG a score=3370 s hg19.chr6_ssto_hap7 4723130 147 + 4928567 CATCAGCTTGGAGTGGCAGGCCCCTTGTTCTCCTAAATGCAAGAATCAGAAGGCA----------CTTAG---------------------------------TGACAACTACATATGCTGAGCAATGGGGGAAAAAAAAGATACT------------GCCTGCTTTCAAAGGGTTGTCTGTAATA-CTAAATTCTGTGTTCA s canFam2.chr12 5721044 197 + 75515492 CATCAGTTTTGAGAGCCAAGCCCTTTGTCCTCCACAATGCAGAGACTAGAAGATACTGTACTGTTCTTAGGTGCTGTTGCAAGTGTCTTTAACAGTCAACATCTGATGGCTATATATGCTGAGCAGTGTG----AAAAAAGATTCTTTTTTTTGCCCGACCTACCCCTGAAAAA--GTATTTAATAGTTAGATTCTGTATTTA a score=2776 s hg19.chr6_ssto_hap7 4774460 66 + 4928567 atcactatgatatttcaattccactggacaat-aaatggtgatctaattgttttattttaaaatgtG s canFam2.chr12 5769244 63 + 75515492 gtcactttgatattaccattcccctggacatttaaagggtaatat----gttttatttttaaatgta a score=3520 s hg19.chr6_ssto_hap7 4776104 45 + 4928567 gtgaatattttcaatatgccagaa-ttacatccttgaaacaatttt s canFam2.chr12 5769504 46 + 75515492 gtgaatgtttttaatatgccagaaattacatccttgaaacaatttt a score=6588 s hg19.chr6_ssto_hap7 4776482 109 + 4928567 aatttatgatgaaaatttttagatacctacttaaagatatatgaaggagtatatacttcttcaaaattatttccctgagtataggtgcagaa---tttaagactgctgCCCT s canFam2.chr12 5769550 111 + 75515492 aatttatgatgaagatttttagatggctccttaaaaatatgc-aagaagtacaaactttttcaaaattattttccagagtataggtgcaaaaaaatttaagacagctgTTCT a score=48762 s hg19.chr6_ssto_hap7 4776906 1055 + 4928567 AAGCTATCCAAGCATCTCCTCCATAGCCCCCAACACTCCCATTTCCCTCCTGTCTCCCCTCTCACCTCCTTGGTGGGGAAAGAAGATGTTTATAGGAAAGGTGGTCACAATTCCAGCTCCTCCTCCTTCTGAGGTGTCCCCAGGAGCCAGTCCCCTAACTTTGCCCATAGTAGTAACCACAGCAGCTTATAAGCAGCCTCCAGCATCAGCAGTGTCAGGAAGAGGGCCAGGAAGATAAAGAAAGCCTTGTCCAAGGCACGTCGCACGGGACCCCTGGGAGGGGAGGGACCCTGGGCAAATGCCAGGAACACATCCGCCTCGTCCACATCACCTTCCTCT---GCCATCCTGACTCACAGTCAGACAGCTGGCTGGATCAGGG--GGCTGGGATGCAAGGCCTTGCTCAGCACTGCCAGGATTAAGGAGCATGGCTGTGGCAAGTCCTGCACCTGCCAGTCCTGACCTTAATTCCCACACCTA----AGAGAAAAGAGAAAGGACCCTATGAGCCTTCAGATCAATTATTTAAACATCCAGtgtgatgtgaaaggtctggactaaatgatccatgaactctattcagctttttcatagtataattctgtgattTGGAAACTGAAGGCCCAACATGAAGGCAT--AAGCTAGAACTGCCTGTCACTCTGGGTCTCAAGTCTCAAAGACTCAAGGCTCAAAATCTTGGGCCCCAACTGATAGAGAGTGAGGAAATGGACCTACCATGCATCTGTGAGCCATGGTCAGTCAAGGATCTAAAGCCCCTTCTGGCTGGATGGTAGGGGGTGAG--ATGGTCTATCCTAACCAAGGCGGGTAGGAACAAGCAG-AGGGGACTTGAGTTCTCACAGGAGTAGTTCTCCCCACTGGGTCTGCAGGCAGCTAAGTTTGAGATGGTATAACCCAGAACACTCTCTTCCTAACTTTTGGTCTCTGCAGTACCAAGGGAGGATTATCATT-GACTGCATGAGCCCAAGGGGAGGCTTATAAAAAGACAAAGACCGTGATGGATCAGCAGGGCAAGGGTATGTGATTGGGACTTGGCTGTTGGG s canFam2.chr12 5769661 1018 + 75515492 AAGCTATCCAAGTGTCCCCTGCACAGCCCCCAGCAGTCCCATTTCCCTCTTGCCTCCCCTCTCACCTCTGTAGCAGGGGAAGAGAATATTTATAGGAAAGGTGGTCACAATTCCAGCTCCTCCTCCTTCTGAGGTGTTCTCAGGAGCCAGTCCCCAAACTTTGTCCATGGTAGCAGCCACAGCAGCTTACAAACAGCCTCCAGTGTCAGTAGTGTCAGGATGAGAAACAGGAAGACAAGGAAGGCTTTGTCCAAGGCCCTACGGAAGGGACTCCTTGGAGGACAGGGACCCTGGGCAAATGCCAGGAACACATCCTCCTCGTCCACATCACCTTCCTCCTCAGCCATACTAACTCATAGTCTGAGAGCTGACAGGATCAGGGAAGACTGGGATGGAAGCCCTTGCTCAGCAAATTGAGGATTAAGGGGCATGGCCACAGCAAGTCTTACACCTGCTGAGCCTGACCCTAATTCCCCCACCAAAGAGAGAGAAAGGAGAGAGAAGCCTCTGAGCCTTTGAAATCATCATATGATCATCCAGTGCAATGTGAATGGTCCAGACTAAATGATACATAAAGGCTGTCCACCTTTACTGTAA-------CTGTGACCTGTCAACTGAAGGCCCAGCTGAGAGCTATGCAAGCTGG----TCCAGTCATGTCAGGTCCC--------TAGGCTCAGGGCCCAGCGTCTTGGGCCCCTACTGACAAAGGGTGAACAAGAGGAGCTAGTATGAGCCGGTAAGCCGCTGTC--------------AGCCCATTCCAGCTGTCCAATGGGAGGTGAGAAAAGGCCTAGGGGAACTGAAGCGGGGGTGCAAGAGCAGCAGCAGGCTCCAGCCTGCACAGGCCTACCTCTCC---CTAAGTCTGCAGAC-------------CCGTTGAAACCCAATGCACTCTCCTCCTCATTTCTGGGCCATGCTGT-CCAGAGGACAACTATAATTGGAGGGCAGGGGCCCAAGGGAACGTCTGTAAAAAGAGAAAGATAGTGACTGGTCAGCAGAGCCGGAG--AGTAATTAGGACTTAAGTGTTGGG a score=1436 s hg19.chr6_ssto_hap7 4778286 107 + 4928567 AATTTTAAAGAAGAGTGAAGTTTTGCCATCGATGGTCCAGGTCTCAGAGGCTACCAGTGGAGGATGTGGTTGAGGAGGTTGTA---GGAGCAAGGACTGAAGACCttttc s canFam2.chr12 5770696 75 + 75515492 AGTTCTGAGGAAGAGT-----------------------------------TGCTGACTGGGAGTGTCATCCAGGAGATTGTCACTGGGGCAAGGGTTGAAGGCCATTTC a score=7882 s hg19.chr6_ssto_hap7 4778764 214 + 4928567 TTGACCCTGTTCCCCAGGCATTGGCCTGAAGGTTGGGTAATGAAATTGAAGCCCATCTGGAAACAAGGGATTCGCCC-----------AAGTGAGGCTGAGGGAGGGGAGGGGGAACGGTGGAGGAAGCAGTGTGTGTAGTAGTGAACCTTATACTGGGAACCTTTGGAGCCTCCTACCTAAACTATTTCATTTTCATTTTCACCTCAATAGGAAGATCTTGTTC s canFam2.chr12 5770771 201 + 75515492 TTGTCCCTGTTGCCCAGGCACTGGCCGGAAAGTCCATAACAGAAGTGGAAGCCCAGTGGAGACCTGAGGATTCCCCCACCCCTGCGATAAGTGGGGCAGGGGGTAGGTAGGGCAGCCAGCAGAGGAAGCAGTGTGTG--GTGGTGGACCTCATACCCGGAGCCTTTAGGGTCTCTTAC----------------------TTACCTTAATAGGAAGACCTTGTTC a score=2206 s hg19.chr6_ssto_hap7 4780392 65 + 4928567 ttgttttgt-aataaaatcagaaaaagctcttgcctcccagaattattctgagagataaatgaaat s canFam2.chr12 5771832 65 + 75515492 TAGttttttaaataaaatta-ataaatCTCTCTCCTCACAGAATTGTTATAAGGAGAAAATGACGT a score=14725 s hg19.chr6_ssto_hap7 4780457 261 + 4928567 aaaggttttttgatgttgttggttttttgtaaattataaagcactatgtaaatgtaaCATATTAA--TCTGATACCCTCACTTACATCCCAGGCAAGTGTGCAATAAGGCCACACAAACACCTTTAT-TGTCTCTTTACATGGTAGGTTCAGCACCAACATCTTGTGTAATAAATAAACCTAGCATCTTGTTGGA-ATTTttttaattttgaaataattttcagcttacagaaaa-atttaagaacagttccaagaactttggcat s canFam2.chr12 5772091 261 + 75515492 AGGAGTTTTTTGTTTGTTTTTACTTTTTGTAAATTGTGAAGTGCTATAT-----TAATATATTAATTTCTGATACCCTCACTTACATTTCAGGCAAGTTTACAATAATGCTACACAAACACCTTTATCTTTCCTTCCACATGGTAGGTTCAGCACCAATGTCTTGTATGATATATAAACCTAGCACTTCATAGGATTTTTttttaattttgaaataatttcaagtttacagaaaacatttaagaatggtttcaagaactctagtat a score=4453 s hg19.chr6_ssto_hap7 4780718 105 + 4928567 gtacctctttcactcagattttccatttgtcaacacttggctgtatttgttccatcTCGCTCTCAACCCCAGTATAACCATGtgttacaggttgaattgtgtctc s canFam2.chr12 5772531 102 + 75515492 gtatccttttcatcctacttccccacttgtctacatttgggtaaatttact-cattt--ctctCAACCCCAATATAACCATCtgttatgggttgcattttgacac a score=8716 s hg19.chr6_ssto_hap7 4781752 211 + 4928567 Taaaatttatataatgaagtcctaactcccagttcctcagaatgtaaccttatttggaaataaggttgttgcatatgtaattggttcaatga-----ggtcatactggagttgagtgggcctctcaccc-------------cctttat-aagaaaggaagtttggacataggcttgcggatagagagaatgacatgtgaccatgaaggcagagatcaggttgatatgtc s canFam2.chr12 5772634 230 + 75515492 caaaatttgtatagtaaagtcttaaccctcagtatcttagaatgggaccttatttggaaatagggtgataatagatgtaattggataaattaacatgagtcatactgcaggagggtatatacctaatccaaagtgactaatgtcattatgaaaagaggaaatttggacacagacctgaatataatgagaacaccacgtgtgcatgaaggtagagagagggttgatgtgtc a score=5808 s hg19.chr6_ssto_hap7 4782598 125 + 4928567 cacacaaaagactgccagcaaaccaccggaaac-tagtagaaaggc-ctggaacaga-ttctcccttacaccc---ctcagaaagaaccaaccctgcctacaccttgatctcagacttccagcctccagaa s canFam2.chr12 5772876 131 + 75515492 aatgccaaagcttgccagcaaaccaccagaagcttggtggagactcattggattagacttctctctcacattattgtttagaaagaaccaaccctgccaacaccatgatttcagacttccagcctttagaa a score=8765 s hg19.chr6_ssto_hap7 4782723 155 + 4928567 ctgtaaggcaatacatttctgctgtttaagtctcccagtttgtgatactttgttatggca-------gccctagcaaactaaaacaCCATTCTaatcaggaaatcaatatcactcttcaattcatagatcccattcagatttcaccagctgtcccagtaatg s canFam2.chr12 5773225 162 + 75515492 ccatgaggcaataaatttctattgtttaagccactaagtttgtagtacttcattactaccctagtttgccctagcaaactaatacaCTATTCTAAATAGGAAATCAGCACCACTGTTCAAATCCTGGATACCattcaaatttcaccagctgtctcaataata a score=5497 s hg19.chr6_ssto_hap7 4783369 123 + 4928567 TCTGTCCTTtctagtccaggatcacatactgcatttgactgtcacatatctatctgtagtctccttcaatctgggaagttctcagtctttccttgtctctcatgaatttgacagttttgaaga s canFam2.chr12 5773403 115 + 75515492 tctggccttttgggtccagaattacatattgcatctggttgtcacatatcta----cagtctcctttaatctgggcagatcctttatctgccttggctttccagaat----cagttttaaaga a score=5471 s hg19.chr6_ssto_hap7 4836344 142 + 4928567 aaaaaataaaaaattttaaaaatGGAATGGTAGTTACCTTT--GCTAGAGACTGAGCATGCATAAAAGTAATCTTA-AATAACTTTTTCGCCTTTGGCCAAATGTTGGTTCATTGTGATTTGGAGTCTACCATTACtataactgt s canFam2.chr12 5806570 139 + 75515492 AACAAGTAAAAAAT----AAAATGAAATGGTAGCTCCTCTTTAACTGCAGACAGAGCATGCCCAAAACTAATTTTGTAAAAGCTTCTTC--CCTTGGCCAGATGTTGGTCCATTGCAACCTGGAGTCTAGCTTGATATTTATTGt a score=6379 s hg19.chr6_ssto_hap7 4836503 166 + 4928567 tatctgtacctgtacctatacctacatatgtacttatacctatacCATCTGTCCTCCCCTGAAAGACCTCAT-----CAAAGTTCTCATCTTGCAATGTTTCCTGTTAAATATCATCATGACTACTTTTAACCTATTTGAATCAAGGCTGAGTTACAGCCTTTTAAATTTT s canFam2.chr12 5806903 157 + 75515492 TGTCTATAGCTATAGCTCTACCT--GTATGTGCCTGTACCTAAGCCG---------CACTGAAAGACCTCATGTCAACAAAGTGCTTTTCTTGCAACACTTCCCATTAGACATCACTCT---CATTTGTAACTGATTTGAACCAAGGTTGAATTACAATCttttaaaattt a score=8697 s hg19.chr6_ssto_hap7 4837349 123 + 4928567 TATTGACTTTTCATTA-GTTTAAATCCTTGAAGGGTACAGCATCACTCGGATTCTGTGTCCAATAGCCTTAGTGGGAAGATTGCTTCAGAATTTGGCACGAATCATGTCACTGTTTCCGTGGGc s canFam2.chr30 14654127 124 + 43206070 TATTTACTTTTCAGTAAGTTTAAATCCTTGAGGGGTACAGCATCACGCGGATTCTGTGGCCAATGGCTTTCGCAGGAAGGTTGCTTCGGAATTTGGCACGAACCATGCCGCTGTTTCCATGAGC a score=12374 s hg19.chr6_ssto_hap7 4837855 284 + 4928567 taatttttacagttacactttgtaactagtgttgctgaagacggaaatgcaattgattttgaaaattgattttttcctcttactgattttttatccatcaaccttgctaaacttatttatcaattctatctgaattttattttagggatgctgcacatgcaataatttcatctgcgaatattaacatt-----aatgtttcttgtagtccttatatatttgttgct------tattggactggctacaacttccattgttttattgatgaggattattgagagcaggcatccttg s canFam2.chr12 5809418 284 + 75515492 tattattaaaagttataccttctgatg---gttgctgctgctagaattgcaatagatattgtatattgatttttgcta--tattg-ttttatatccagcaaccttgctaaacttac----caattctatcttaattttcttttggggttgctacacacacagtaatttcattcatgaatactgacgttccttagtttttttccttaatccttatatatttgttgctgttgtttattggactggcta-accttccactattgtattgactagggttattaagagcaagcatccttg a score=10007 s hg19.chr6_ssto_hap7 4838140 273 + 4928567 cttgttccccatcttgaaaggaacgctttcaacatttccccattatggtgatgtgttttgcgaaatttttgaagatgtcctttatcagcttctggagt----tttaaaaaaaatatcaacgggtgttgaatattttgagtgactttgctgcatcaattgagatgaatacattttccccctttaatctgctaatgGGTCTATATTTCTCCATTCCatttaaatttttttttaa-tttgataaatatCTTTTGCTATATGTTTCTTCTCAGGTCTCCCTT s canFam2.chr12 5809884 250 + 75515492 cttgtttctcatcttaagagaaatgctt----------actattattgtgacgtgtgctgcaggatttttcaagatgtcctttatcaggttatggTGCATTCTTTAACAG------CAACAGATGTTAAATATTTTGAGTAGTTTTTACATGCCAATTGACATGAATAAACTGTTGCCCCTT-------TAATGGGTCCATACTTGT--AGTCTA---ACGTTTGTTTTTAACTTTGAGTAATGTCTTTTGCCGTAAGTTTCTTCTCAGTTCTCCCTC a score=7167 s hg19.chr6_ssto_hap7 4838413 206 + 4928567 CTCAGTTATCCCCCTTTACCT-TCCATT----GTTGGTTTTCTCTAGTTTCTTCCTTTTCTTTTTAC-----------------TGTGTTCTCTTCAAGCTCTTGCTTTTTGGAGTTTTCCCAGGATATCAAAGGTTGGGGGGATGGCAACATGGTTTTCAGACAGTGTGTCTCCC-----CACAATCTGCTTCTCTCTACAAGCTTGTTTGAAGCCAAGTTAAAGCAATGGA s canFam2.chr12 5810313 231 + 75515492 CTCAGTTCTCCCTCTTTACCCATCCATTAAGTGTTGGTCTTATCACCATCCCCCCCCCCCCCCCCACAAAAAAAAAAAATCCTCTCTCTTTTTTTTAAGCTCCTGGTTTTTGTAGGTTTCCTAGGCTATCAACCGTTGGGGG-ATGACCACCCAGTTTTCAGACACTGGGTTTTTCAAATCCCCAGTCTGCTCC-CTCCACAAGCAGGTTTGAATTTAAGTCAAAGCACTGGA a score=97658 s hg19.chr6_ssto_hap7 4838619 2809 + 4928567 TAGAAGACGGCAGCGCGGGTGTCAGACCTGCCAATTTCCAACTGCACACCAAATCCCCGAACATATGCTTGAGGCCCCTGCCTTTCGGTTTCATAaataaaa-ccctgtcctgactacctccaggattggatggaaactcggatgagtaaatatggtagaacgactttgcaaactagcaccctattcacacgtaaggggtt----gctcttgtCACCGAGACTGTTagaggcaacgtgagttaacagaaatagcttggattttgaagctaatggaatctagatccattcctaaccagcagtgtgaccttat-------tgtgtaatctttctgaacctgtctccatccatctctacaaagaa----tgtggcacaat--------gtaggaactcagtgaattttcgtgattaaaagacgagataatacaggtgca--caatctgcaaaacataaaatactccataaatggaagcAGTAAATCTTCCCCGAGCTCGAGACTCCAAAGGCCCTGAG-----CCCAGTACCAGTAACAGCACCCAGGTAAGTAGGC--TGGCTGAGAGAAGAGGGCTATAAAGAAAAGTTCTTTCCTGAGCTTTGAATCCCCACTGTCAGGCTTCAATGGAGCGCAAA-----------AATTCCTAAATTTGGTGAGAAATGGCAACATTACCAGGGAATGAACAGACCAGGCCACTCACAT-CCACGTGAGGGCTCCAGGAGCCACTTCC---GGGCCCAGTCAACCACGACCAGGAGAGGCAGCGCTG------GAGCCTCAATCACGTCGACG--------GAAAACAAGTGCGCTCCCTACTGCAGTCACCAGGAG---GCGCTA----GTCCCGCCTGTCTCCCGGCACGGGTCCTCGTTTGCGCACGCGTCATTTCTTTCCTCCAGCGTCCCCGCCCCTTCTCCTCCGGCCGCCACCAGTTTCGCTTGGCCAGTTGCGTTCGTGCGGCGACGTCCACGCATTTTCTGACGTAGCGAGCGACGGCGGGGAGCCGAGCGGAAGTCCAGCACTATTGCCGCTAGAGGAGGGGAGGG-GTGAGAAGCATAAGTGGCACCGGAAGTGGAATTAATCCGCCTACCTCTCCTGCGCCTGCGAAACAGAAAAGACAAGGCGCCTGTCGGGCGGGGTGTGGCTTCGGGTGGCGGAGAACGCTGCGATTGGCCCTCGGCTGTGGCGACAGCGACGATTGGTCCCTGCGTGCAGAGCGCGGTGAGAGTGGGTGGTGGCCGTTGGAATTCAAAAGTGGCGGGTGTGGCGCGGGGCTGGTAGCGGCCGGAGCCGTGCGAGTTCTCTACCCTGCTTCGCGAGCGGGCGAGAGAACGCGAGTCCCAGGATCCCCGGCACCCAGTTCTCTTCCACTGCATTCCCCCGGCGCGTGTGGGACCGAGGTGGACATGGATCCGCAGGTGAGTAGGGGCGGCGCAGGTGTCCTGCCCTGGGGATGGGGACGACGGCTGACCGCTCCGATGCTGTCGCGCCCCCGGCTCCCGGTCGGCCTTTGTCATGTCTACCGGGAGAGCGAAGGTCCGTGCGCCCCCGCACAAGTGGAAAGGGGCGGAGGCAGGAGTGGAGACGGCTTAGAGCA-CCCGGGGAGGTCGGAAGGCACGTCTGTCTGCCCTCCCCTAGCTTCAAGTTTCTGGAGCCCCTCCCTTAACTTTCATGTCTCCGAGATTTCTC-ATTTCGAATTCTCAGGCTCGTCTGACAC-ATTTCCACTTCTTTATTCCTACTCAGGGTGTGATTGCAGTGTGTAAGAAGGGAGAGTTCTGATATGACTTCTTCCTTTTGGGGACATGGTGTCTGAGGCCACATCCTTGCTGAGGTCCTTTTGTGTTAATCGCCTCTCCTTATCACTGCTGCTTCGGAGTGTAGGAAAGGGAGAAGGAGAGTAGGGTAATCTGGGCCAAAAGACTTCTCATTCTCTCTCTCCTTTCCCAAATTGTGC--AGATTCCTGCCCAATGAAACTGATTGATTTAGTTCTTTCTCTTAAATGGTGCCCTGCTGCACCCCACAACCATATGCAGCTTCCTGTCTCCAGTGAAGAGAGATGAATGTGTGTGACAGCTGGAGTGTACTTATCTCTGGTGCCAGGAAAGGTCTCCTGCCTGAATCCTTTGTTTACTAGTATTTCACGTTCAGGTTTCCCTGAAGTTAGGATTCAGCCTTAAGAGAGATTCTTTCTCTCGTGACAACCAGAGAGCAGAGTAGTATTATGTGACAGTAAGAAGTAGTAAAAGCCTTCTCAGatctattaatcaagtatttattgagcacctactacatgctaggcgtggttgtaggtacttaggatgcagcagtgaacaagggacaaatcgttgccatc-------------------gtggagctgccattctatggggatacagacaataaatgtaataaatgaattatataa--ctgccagaaggccgtaagtgctgtggagaaaaggagaaattca---aggttgagga--cataggggaggccaactggcgggttagagtattaaatagggtggtctcagtaacccccatggaaaagatg--agttgaataaa-gacttgaaggaagtgagggagacagacaagcagatagtgagggaagaacatttcaggcagagggaatctgctagagcagagtccctaaagagttgtaaggagggaagtgtggctggaatgaagtgagcaaggggaaaagttgtgggaaaggaagtcaggtaatgggtagtggggttgctgatcacagtttgtccttgtggggg--tcgttgtgaggacttttactct---------------gagtgagat---------------ggggaatcattgga-----------------------tgattttaagcagagagata---agatttgTTGGG------TCCACCAGATTTTCGTAACCATAGCACCATTG s canFam2.chr12 5810736 2771 + 75515492 TAGAAGATGGGTGGCTTGATTCCAGCTCTGTCGATCTCCAAAAATGCACCAAG--ACAGAAC-----------TCCCCTTCCTTTCAGTCTCATCAATAAAATCCCTGTCCC----ACCTCCAGG-TTGGTTGGAAACTCCGACGAATAAATGCAGTACAATCACT--GCAAATTC--------CTCGCAGGTGAAGGGTTTGATGTCTTTGACACTAAGATTGTTAGAGGTTGTGTGGGGTAACATA--TAGCTTGGATTTTGAAGCTGCTGGAATCTAGATCCACTCCCGATCATGAGTGTGACCTTGTGCTTGGATACCTAACCTTTCTAAGCCTACCTTTGTCCAGCT-TGCAGAGAAGGGATGCAAAACACTCGACCGTAGTAAGAGCTCAATGAATTT-AGCGATTATTAA--GAGATAATGCACGTGCAGACAGCCTGAGAAGCATAGAA-ACTTCCTAAATGTAAGCAGTCTGCCGTCCGTGGGATGGAGGCTCCGGAG-CCCTAAGGCAGCTCCAGCACCGGTACCGGCGCCCAGGTACCGAGGACATGGGGTGCCGAGGGGGACTGCAGGGAAAACCCCT---CTGAGCCTCGAATCCCCACTGTCGGGCTTCCA-GGAGCGCCAAGCTGCACCTCAAGTCCCTAGGTTTGGGGGGAAATGCCAAAATGACTGGGGAGGGGGTAGACGCGGCCACTCTCACGCCACCGGCGGGCTCCTGCTCCCACTTCCCGGGAGCTTTAGGGACCTCGCCTCCGCGGCGAGGCGCCGAGTCACGAACCCTAATCGCACAGACGCGGCCGGGGGTAACGGGGGTGCTCCCCGCCGCACTCGCTGGGGGCGGGGGCTGCCCCGTCGCGTCCCTCCCCCTAAGCGAGTCC-CGTGTGCTCTCGCGTGATTCCTTTCTCCCAGCGTCCCCGCCCCCACCCC----------------------------GCTGAGTTCGCGCGGCGCCGTCCGGGAATGCTCTGACGTGACGTGCTGCAGCCGGGAGCCGAGCGGAAGTGCAGCCCGACCCCGGCTGGAGGCGGGGTGGGCGAGAGAGGTGGGAGGGCAGCCGGAAGTGTGACTAA-CCTCCTGCCTCCCGCGCGCCGGCGAAGCAGGAAGGGGAAGGTGCCGGCCTGGCGGGGTGTGGCCTCCAGAGGCAGGGGGCGCTGCGATTGGTC-TCGGCCGTGGCGACGGCGACGATTGGCCCTTGCGTGCGGAGGGAGGTGAGAA-GGGTGGCGACGGTTGGAATTCAAAAGTGGCGGGTGTGGCGTCGGTCGGGAGCC--CCGGAGCCCCGCACACGCG-TGGCTTGTGTCGCAAGCCGGCGAGAGAACGCGGGTCCCGGAAGCCCCGGCGCCCTGTCCTCTTCCGGCGGGCGCCCCTGGCGCGTGTGGGCCGGTGCTGGCCATGGAGCCGCAGGTGAGTAGGGCCGCGAGGGGTCTCCTGCCCG---------------------------CGACGCTGGCGAgcccccggcccccggccggccTCGGTCCTGCCT-CGTGGAGAGCAGAGGCCCGTGCGTCCTCGCGCA---------GGGGACAGGCGGGAG-GGAGAGGGCTGGGAGCAGCCCCGGGGCGTCGGGGTGCACGTCTGCCAGCCCTCCCC--GCTCTGA------------------------TTGATGTCTCCAGGATTTTTCGATTTCGAATTCTCGGGCTTATCTGACTCTGTACCCACCTCTCCATTCCTGCCA-----GCGATTGCAGTGTGTGATTGAGAGGAGTTCTGAGATTCCGTCTCCC--TCGGGGAAGTGGTGCCTGAGGCCAAATCCGCGCTGATGATCTTTCCTGTT------CTCTCC-GGTTGCTGTCGCTTCGGAGGGCGGGAAGGGGATAGAGGGAATGCGGTAATCTGAACTGAAGGATTCCTCAT--TCTCTCTCCTTCGTCAGGTTTTACAGAGATCTCTGCCC-------CTGG--GACTTAGTTTCTTCTCTTATCGGTGGCCCTACTGCACTTCACAACCATCAGCAGCCTCCCCTCTCCAGTCGAGAGAGA------TGTGTGACAGCCAGAGTGTATTGACTTTTGGTGCCAGAGAAATGCTCCTGCCTGGATCCTCTGTTTGCTAGTATTTCACATTCAGATTTACCCAAAG-CAGGTTTCAGACTGAAGAGATATTGTTTGTATCCCGACAGCTAAAGAGCAGATGAGTATGATGTGACCGTGAAAAACAGTAGAAGCCTTCTCa---------------tatttactgagcacctactgtgtaccaggcacagtggtagatacttgggatgcagcaacaaacaa--gacaaatccctgtcgtccctacagatgccattctatgagaagctgccattctgtggggagccaggaaat-----------ataagttacataactctatttcaaagtgatgaatgctatgaacagaaggaaaaacttgagcagattaaggaagaggaggggaggccaacttgcaggatacagtattaaatagggtggtcttagtaagctccattatgaagatgaaagttgaataagtgctttgaacaagatgatggacaaaggctagtgattactgagggaagagcgttccaggcagagggaatctgctagagcaaagtccttcaagaattgtgtagcaaaa------gctaaaatggagtgagcaagggggcaaattgtgggaggggaagtcagagcatggagagtgggattgtcgacccca-ttgcttcttgttggggctttgttgtgaggcccttgacttttggatggttttaagcaggtaagatctgtcttacattttaagaggatcactctagctgccacactgagagtaaacatcaagggtaaggaaagaaacaaggaggactgttaggaagGAATACAGCAGTTtttctcaacttccatactattg a score=13842 s hg19.chr6_ssto_hap7 4842136 348 + 4928567 actg-cATTGgacattgtcaaatgtcaccttggggataaaatcacccccagttgagaaccactgGTttatgataatctaggtgccagatgatggtgtcttaggtcagggtgatagcagtggaagaaacagtaaaaagtgattggattctggatatattttgaaggtacaatcagccatgctttgctgacagattagatgtggtatgtaggagaaagagaggactctggg-tttttggcttgagcaactgaaagatggagttatatcaattgagatggagaaagctgcaaaaggagcaagttcaaagcagggttggacatcaagaggt----------------------cagttattagacttccaaatgga s canFam2.chr12 5813611 334 + 75515492 actgtctccggacctcatcaaatgccccctagggagtcaaatcacccccagttgataaccagtgGAGAATGATAACCTgag----aggtgatgctgacatggatcggggttgtagcagtggaag---tagtaacatgtggtcag-ttct------------------------gtcatcctttgctgac--attagatgtggtatgtaagagaatgagaagacttgggattttttggcttgaacaactgaaagata----tatatcaactgggatggagaaagctgtaagaggaccaagttcgaaagggatttggacattagaaagtccatttggatgtaagtttgacacgtttattggacttccaagtgga a score=27863 s hg19.chr6_ssto_hap7 4842787 873 + 4928567 gatgttgacgatgcagttcagtataggtgcaggatcgaggtctgagctggacatataaatttggaaactgtcagcatatcaatgatatttaaaggcatgggagtggatagtgagtatagatagagaatgctgttaaaatctggagagatgaggaggacctgccagtgagg-----------taagaaagagtggtctcctggaagctaactgaagaaagcctattaaggaaaagggagtaatcagttgtatcagatgctgtttgatgggtcaagaaa-atgaagataaagaattgacttagcaacatgaagt-tacttgtgatcttgaggatagcaatttcgatggaatggtgggaatgaaagcctgattgcaatgggcttaggagagaaattggccacgatgaatacactagaggtaatactttagagttttgctgcgaaaggcggcaaggaaaaaggatagtacctgttagggaaagcagagttcaga---ttcttttagtttcgaagaaataatagagtttgtggt-atgccaattggagtgatgccatagagtacaaagctgatggtgcagaggtgagaagggaggattgctggaggaatgttcctgaaactgggaggatttggcgagtccaggatttggtgaggagggatgggaatgtgatgcatatatgaaagggttgccttaggagcagggccaTCCACCTCTGATCTTGTGGTGAGGTGGATGTAGGCAGGGTTGCATGAATATCTGTTCTTATAGAAGGTTAAGTGCTTATGCTTCTCACTGTGGAAAGTTGGAGGGCATCAT-TCTAGCTTTATATTAATAGATGGGAAAAATATATATACTGTGGTCTTTGGAGTTGTCCTGAATAAACAAACCTTTAAA s canFam2.chr12 5813945 754 + 75515492 gacattgagaaggtagttgcatagaagttcaggaacaaggtctgggctagaggtataaatcttggagttgtcagcgtatggatgagagt-----gcactggaatgtggatagagaatagaaagaccat--cattaaagtttggaaagatgaggaggacctgcc-gtgagagatggggaaaccaagagaggatggtctcctggaagctcaatgaagaaagtgtattaaggacgtgagagtgagcagctctatcaaatgctg--tgataggtcaagaagcaggaagatgcagagttgacatagcaacacacaatgtacttgtgacctcaaggagagtagttttgatgacacagtgagagtgaaggcctgattgggatgagtttaggagagaatctggacatggtcaatattctagtg--aacacttaagggttttgctgcagagagtaacaaaaag------------ctgacaggtaaagcagagtcaagaaactcttttcagtttggaagaaataatagcatgtgttataatacagataggaatgatccagtagagtgaaaagttgatggtgtagaggagaaatggaaggattgat--aggattctttcccaa--tagatagat------------------------gaaggactggagtctgatgtatacatggaagggAAGCATT-------------------TCT-----------------------------------------------------------------CTTATGCTTTTCATTGTGGATAGTTGGGAGTCATTGTGTCTGGCTCTATATC-ACAGATGGGAAGAGAATTAATACTGTACTCTTTGGAGTTGTCCTTAATAAACAAACCTTTGAg a score=1478 s hg19.chr6_ssto_hap7 4844641 35 + 4928567 AATAGCCCCTTTCAACTAGGTTCC-ATGAGAATTAA s canFam2.chr12 5816359 36 + 75515492 aatagcaccttctcagtgggctcctataaggattaa a score=1416 s hg19.chr6_ssto_hap7 4845592 20 + 4928567 CAGGTGAAACATTTCAAACA s canFam2.chr12 5816402 20 + 75515492 cagatgaagcatttaaaaca a score=40393 s hg19.chr6_ssto_hap7 4845624 823 + 4928567 TATTGCCTGATTCTCCCAAG---CAGTCTTCAACACTCACATATCTTCCACTCTCTCCCTTGTTTATGATTCTCAGCTCCAGCCAAAAGGGCCAGTTGGTTTCTTAGCCATGC--TATGTACATATTTGAATTTTTGCCTTCCAGGAAGAGCATCCATTCCTCTCTGCTTGTTTGAGTCCCACCCTTAAAGTTAGTCAAG------------TCCAGCTTTTCCCCTAGAGGTTATTCCCACTTTTAGGTTACGTCCTCACTTCTGTTCATGC----TGTCTGGCACATAATTCA--------GCTTTTGGCACAAGTGGTGCTCAGT----GCTTGGTGGTGGTGTTGACAATTGAGGCTGGGGGCCAAGACAGGAAGTTCTTGGGACATTTGGGCTCCTGGGTATTGTCTTAAGGGTCTCT--TTTCCCAACAGAGGTCCCCCCTATTGGAAGTAAAGGGGAACATAGAACTGAAGAGACCTCTGATTAAGGCCCCTTCCCAGCTGCCTCTCTCAGGAAGCAGACTCAAGAGGAGGCCTGACCAGATGGAAGATGGCCTGGAGCCTGAGAAGGTGAGCTGGGCATGGAGAGCTGTGCATGTGTGTG-----------GGGGGTGTGTGTGTGTGAAAGAAAGGAGAGAGAGAGTATAAACCATTAGGGAGGGTGACT--ATGGACCTTGTCTTTATCTTTCCCCAGAAACGGACAAGAGGCCTGGGTGCAACGACCAAAATTACCACATCCCACCCAAGAGTTCCATCCCTCACTACAGTGCCACAGACACAAGGCCAGACCACAGGTGGGCTCTCAGGATGGATAGACTCCAAGGACATGGAAGTCCAGTGCTCTTCAACTCACTTGt s canFam2.chr12 5816595 857 + 75515492 TGTTACCTGTTCCTCCCATCATCTAGTCTTCAGC-CTTACCCATTTTCCAGTCTCTCCCTTAACTGTGATCCTACATTCTAGCTGAAAGAGCCTGTTGATTTCCCAGCCATATATCATGTGCATGTTTGAAGTTTTGCCTTCTGAAAAGAGTGTCCATTTCTCTCTGCCTGTGTAGGTACTACCCTGAGAGTTAGCTGAGGTCCAGCGTCTGTCCAGCTCTTCCCGTAGAGATTTCTCCCTCTTTTGCATCATGTT-GCACTTCTATCTGTGCCTTTTGGCTGGTACATAATCCGTGGGCCCCGGTTTGTACACGAGAGGTACTCAGTCAGTACTTGATGGTGGT--TGATAATT-AGGCTAGAA--CAGGAAGGGGAGTTCTTAGGACTTTTGGGCTCCAAGG-GTTGTCTGAAGGGTCTCTCTTTTCCCAGCAGAGGTCCCCCTTGTTGGAAGTGAGGGGGAACATAGAGCTGAAGAGACCCCTGGTCAAGGCTCCTTCTCGGCTGCCTCTCCCTGGAACAAGGTTTAAGAGGGGGCCTGACCAGATGGAGGATGCCTTAGAGCCTGAGAAGGTAAGCTGGGTTTGGAAAGCTTTGCATGCACgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgAGA---GAGAGAGTGTGTCTAAGCC---AGTGAGAGAGACTAAATGGACTCCATTCTTGTCTACCTCCAGAAAAGGACACGAGGACTGGATACAGTGACTAAAATTGCCACATCCCAATCCAGAGCACCAGCCCTCACTGCAAGAACACAGACACAAAACCAGATCACAGGTGGGCTCTATGAATGGGCAGAAACCAAGGGCATGAAAGTCCAGCGCTCTTCAACTCACTTAT a score=1803 s hg19.chr6_ssto_hap7 4846763 34 + 4928567 ATTTTGAATAGGTAATAACATTTCATTTGGTTCA s canFam2.chr12 5817475 33 + 75515492 ATTTTGGATAAGTAATAG-GTTTCACTTGTTTCA a score=8345 s hg19.chr6_ssto_hap7 4846797 230 + 4928567 AAATTCCAAAGGCACAAAGGTTGTTGTATAGTG--AAGTTTGCTTCCTATTTCTGTCCTCCAGCCACCCAATTCTGCTACCCAGGG-CAACTGTGTGTT--CTTCCAGGGAAATTCTATTGGTATTCAAGCAAGTAAGACTATACTCCCCCACCTTTT-TTA-CATAAATGGTGGCATACTTTAGACATGGTCCTGC----------TTTTACTTATCTTAATCCAAATTGCTTTTTGGCATATGGA s canFam2.chr12 5817685 245 + 75515492 AAATTCCAAACGCACAAAATGCATTATACAGTGGAAAGTTTCCCTCCGACCCCTGTCTGCCAGCCACCCAGTTCCCCTCCCCAGGGACAACTGCCTTGTCCCTTCCAGGGCCAATTTATGAATGTTCAAGCAAATCTGGACATGTTCTCCAACATTTTATTATTATAAGTGGTAGCATACTT--AACCCAGTTCTGCTCCCTGCTCTTTTTGCTTATCTTGGTCCAACTTACTCCTTGGTGTCTTGA a score=50096 s hg19.chr6_ssto_hap7 4847993 649 + 4928567 TTTAACTTTTTTTTTTCGACCAGTTGTCAAATGATCCTTTATTGAAATATTTTCCTTTGTGCTTAACTAGCTGGGCATTCCACAGCACCACTGTTGATGTCATCTATGATGTCATGAGGGTGGTGGCCATCAACATTACAGCCCATAGACTGGGCAGTCCCCGGAATCTCTTTAATGGTTCCAGAGAGTTCTCTGGCTAAGGATCGGTGCCGCATCTGTCGAGCAATGTTGACGATCTCATCAAAAGTGATATTCCCATTGTGTTTAATGTTTTT------------------------------CTGTTTCTTTCTGTCTCTTGGTGGTTTCTTGAGGGCTTTGATGATCGGGGCAGAGGCAGAAGGCACCACCTCAATCTGGGCCTGTCTGTTCTCAATGGTCAGTTTCACTGTAATCCTCAGGCCCTTCCAGTCACCCGTTGCCTTGGCAATGTCATCACCAACCTTTTTTGGAGACAGACCCAGGGGGCCGATCTTGGGGGCCAGGGCAGAAGTGGCACCGACTTCACCTCTGGTGCACCTCAGGTATACGACCTTGATCTCGTTGGGGTCGAACTTCGGTGGCATGGTGGAGGCAGCTGGTGTCGGATGAACCCAGATTCAGGATGACCGAAGAAAGTTGCACCTTGGCCTCCTCCGAGCCGAAAGCCGAGAGC s canFam2.chr14 53478209 679 - 63938239 TTTCCTTTTTTTTTTTCCACTGGTTGTCAAATGATCCTTTATTGAAATATTTTCCTTTGTAGTTAACTCGCTGGGCATTCCACTGCACCACCATTGATGTCATCCATGATGTCATGAGGGTGACGGCCATCAACATTGCAGCCCACAGACTGGGCAGTCCCCAGGATCTCTTTAATGGTTCCAGAAAGTTCTCTGGGTAAAGATCGGTGTCGCATCTGTCGGGCAATATTGACAATCTCATCAAAAGTGATATTTCCACTGTGCTTAAtttttttttttttttttttttttGCTTAATGTTTTTTCTGCTTCTTTCTGTCTCTTGGTGGTTCTTTGAGGGCTTTGATAATCAGGGCAGAGGCAGAAGGTACCACTTCAATCTGGGCTCCTCTGTTCTAAATGGTCAGTTTCACTGTAATCCTTAGACCCTTCCAATCACCGGTTGCCTTGGCGATGTCATCACTAACCTTTTTTGGAGACAGACCCAGTGAGCCGATCTTCGGGGCCAGGGCAGACGTGGCACCGACCTCACCACCGGTGCACCTCAGGTACATGACTTTGATCTCGTTGGGGTCGAACTTAGGCGGCATGGTGGAGGCAGCTGGTGTCAGATGAACCCGGATTTGGGACGACCGAAGACAGTTGCACCTTTGCCTCCTCCGAACCTAAAGCCAAAAGC a score=65005 s hg19.chr6_ssto_hap7 4851131 1204 + 4928567 gTAATTTCTGGTTCTAGGGGAGGTATCATTAGGAGCTGGCCAGACTT-AGGGATAAGGGAAGGAAGTTATCCTATTTCTAATTCTGAGA-AAAGCACTTCTTCTGCCCCTGTCCTAGCAAGTGTACATGCCATCTTAAGAATGATCATTCTACCTTTGCTCTCTCCCATCTCCTGGGCAGCTCAAAAAGTTTCCAAGAAGACAGGACCCCGGTGTTCCACAGCTATTGCCACAGGTAACTGTGCTCAAGAGCTGGGTCTGAGAAGGGATTTGGGGTATGTGTAAAGGGAGAATGATGGAGGTGGAGGGACACTGGTCCTGTAATTCCTAA-GTCACCTCCTCAATTCTGTAGGGTTGAAGAACCAGAAGCCAGTTCCTGCTGTTCCTGTCCAGAAGTCTGGCAGTAAGTGACAAACATAACCACTGGGTGAGAGGCTGGGATAGGGAAGAGAAGA--TGGTGAGTGA--CCAGAAAAATCCATTTGGTCTCT----------AAGGGGAAGGAGATGTAGCATCAGGTGTGGATCCCATAAAGGCTAGAAGGGAGG-AGGGATAGAGAGCCTAGACTTCACTGACCTTTGTCCTTTCTGTGTTCATCTTAGCATCAGGTGTTCCTCCCATGGCAGGAGGGAAGAAACCCAGCAAACGTCCAGCCTGGGACTTAAAGGGTCAGTTATGTGACCTAAATGCAGAACTAAAACGGTGCCGTGAGAGGACTCAAACGTTGGACCAAGAGAACCAGCAGCTTCAGGACCAGCTCAGAGATGCCCAGCAGCAGGTCAAGGCCCTGGGGACAGAGCGCACAACACTGGAGGGGCATTTAGCCAAGGTACAGGCCCAGGCTGAGCAGGGCCAACAGGAGCTGAAGAACTTGCGTGCTTGTGTCCTGGAGCTGGAAGAGCGGCTGAGCACGCAGGAGGGCTTGGTGCAAGAGCTTCAGAAAAAACAGGTGGAATTGCAGGAAGAACGGAGGGGACTGATGTCCCAACTAGAGGAGAAGGAGGTAAGGGCCAGATTTTCACCAGATGTCAGCCCCGCTTTCCTGGCAGAGGTCATGCCTCCCCTCCCTTCCAGGTACCCCTCAAGTCT----GGGCTGAGAACTCCTGAGCACCTATCTTTAGCAGTAT----AGGTGCTGCTGAAGATACCTCTCTCTTGACCTGTCTGCACCCCAGCCCACTCCTGACTGTCTTGCTTTCTGCCACGCTTCTTCCTAC s canFam2.chr12 5817930 1178 + 75515492 GTAATTTCTGGTCATGGGAGGGATATCTTTAGAAGCTGGCCAGATTTCAGGGATGAGGGAAG----TTATCTTATTTCTCACCCTCAGAGAAAGCAATCTCTCTGCCCCTGGCCCAGCCAGAGCTCATGCCATCCTGAGACTGATTGTTCTACTTTTTTCTGCTCCCATCTCCCAA-CAGCTCCAAAAGTTCCCAAGAAGACAGGACCCCGATGTTCCACAGCGATTGCCACGGGTAATAGTGCTTCAGAGTGGGGGCTGGGAAGAGATTCGGAGTATGTGGAAAGGGAGGGTGATGGAGGTAGAAGGATACTGGTGCTGTGATTCCTTATGTTCACTCTCCAATTCTCTAGTGCTGAAGAATCAGAAATCGGGCCCTGCTGTTCCTGCCCAGAAGCCTGGAGGTAGGTGACTGCCATAACCATTGGGTGAGAGGCTAGGAGCGGGAAGAGAAGAGGTGGTGAGGACTCCCCTAAAAATCTGTTTGATTCCCTCCCTGTCTGGAGGGGAAAGAGATGTAGCATCAGGTGTGGAGGCTTTAAAGGCTAGGAGGGGGGCAGAGAGGGAAAGCCACGACCTCCCTGACCTTTGCCCTTTCTATGTCCATCTCAGCAGC---TGCCCCTCCAATGGTGGGAGGGAGGAAACCCACCAAGCGTCCGGCCTGGGACTTAAAGGGTCAGTTGTGTGACCTAAATGCAGAGCTGAAATGCTGCCGTGAGAGGACTCAGACACTGGCCCAGGAGAACCAACAGCTGCAGGACCAACTCAGGGAGGCCCAACAACAGGCCAAGGCCCGGGGGGCAGAGTGTAGGACACTGGAAGGGGAGTTGGCCAGGGTGCAGGCCCAGGCTGAGCAGGGCCAGCAGGAGTTGGGGAGCCTCAGGGCCCGTGTCCTGGAATTGGAAGAGCAGCAGTGCACACAGGAGGGCTTGTTGCGAGAGCTCCAGAAAGAACAGTTAGAATTGCAGGAGGAGCGGAGGGGACTGGCTGCCCGGCTGGAGGAGCAGGAGGTAAGGGCCATCGTCTCAGCAAACGCCAGCCCA-----------------------------CCTTTCTGGGTTACCCTGAAGTCTCTGGGGGTTGGGAGTCCCTGACCACCT--CTCCAGCAGTATTCCTCTGTCCTTCTGT-----CCTCTGTCCT------TCTCCACCCCTGCTCACTCCTG--TATCTTGCTTTCTGCCCCACTTCTCCCTAC a score=135273 s hg19.chr6_ssto_hap7 4852486 2578 + 4928567 tagattaagttatttgcagtctcttaaatgactcaactttcacttctgggcattctgcatatgtgcttccctctttctggaatgttctttgtatactacatccttcc-ttggttcactcctgtacttctgggtgtcaccctagatatcatcttccttgtgctcctctttgtgcttggacatacccatagcactccctgtcttagtaccatgattccttattttctcatctttctttgtttaccagactttgaggtccttttgagcagggaccTCACTTCCACC--CACTCCATACGCCCCACAGTTTGTTCTTCTTCTTGGTTGCATCTTACCCTCTGTGTATGTTGTGTTCTCTTCTGGGCAGAGGAGGCTGCAGACATCAGAAGCAGCCCTGTCAAGCAGCCAAGCAGAGGTGGCATCTCTGCGGCAGGAGACTGTGGCCCAGGCAGCCTTACTGACTGAGCGGGAAGAACGTCTTCATGGGCTAGAAATGGAGCGCCGGCGACTGCACAACCAGCTGCAGGAACTCAAGGGCAACATCCGTGTATTCTGCCGGGTCCGCCCTGTCCTGCCGGGGGAGCCCACTCCACCCCCTGGCCTCCTCCTGTTTCCCTCTGGCCCTGGTGGGCCCTCTGATCCTCCAACCCGCCTTAGCCTCTCCCGGTCTGACGAGCGGCGTGGGACCCTGAGTGGGGCACCAGCTCCCCCAACTCGCCATGATTTTTCCTTTGACCGGGTATTCCCACCAGGAAGTGGACAGGATGAAGTGTTTGAAGAGATTGCCATGCTTGTCCAGTCAGCCCTGGATGGCTATCCAGTATGCATCTTTGCCTATGGCCAGACAGGCAGTGGCAAGACCTTCACAATGGAGGGTGGGCCTGGGGGAGACCCCCAGTTGGAGGGGCTGATCCCTCGGGCCCTGCGGCACCTCTTCTCTGTGGCTCAGGAGCTGAGTGGTCAGGGCTGGACCTACAGCTTTGTAGCAAGCTACGTAGAGATCTACAATGAGACTGTCCGGGACCTGCTGGCCACTGGAACCCGGAAGGGTCAAGGGGGCGAGTGTGAGATTCGCCGTGCAGGGCCAGGGAGTGAGGAGCTCACTGTCACCAATGCTCGATATGTCCCTGTCTCCTGTGAGAAAGAAGTGAGGACCCATGGGCACTGGAACTGGGAAATGGGGAGGAGTGGGCAG-GGTGCCACGAGATGGAGGTAGAGGGAGAAAGGAGCAAGAGAGAATTGAAGGAT----GAAGTGCAAGTTATCAGGCTGGGTTACCACATCCGGTTTTGGCCTGTGGGCTGTCGG-TAGATCTGCCTTAACCTGGGAGTGGCGAGG--GAGTGATGCATCTGCCAAAACGAGGAGGGT--------------CactacatctcatgtctcatctccttgctcagctcatcctagccatgctggcctcctggctgttcctcaaccagctagtcgtgctccccatctcagggcctttgcctggatgctctttcctggaGATCTTGGCTATCCTGTCAAAACTTGTGTTCCCCACCCCGCCTTTATACACTCCCTATTCTA------TGTATTCCTTACCATTTTCAGACATACTGTGCATCTT--------ATTTTGTTTCTTGACAGGCTAGAAAGCTTCAAGAGGGTGGGGGTGGGCTCTTATTCATTTCCATACATATTACTATGTACTGACTTCT-GCCTGCCTTTTTGCCCCTT-CTGCTCCCATCCCCAGGTGGACGCCCTGCTTCATCTGGCCCGCCAGAATCGGGCTGTGGCCCGCACAGCCCAGAATGAACGGTCATCACGCAGCCACAGTGTATTCCAGCTACAGATTTCTGGGGAGCACTCCAGCCGAGGCCTGCAGTGTGGGGCCCCCCTCAGTCTTGTGGACCTGGCCGGGAGTGAGCGACTTGACCCCGGCTTAGCCCTCGGCCCCGGGGAGCGGGAACGCCTTCGGGAAACACAGGCCATTAACAGCAGCCTGTCCACGCTGGGGCTGGTTATCATGGCCCTGAGCAACAAGGTGGGAATGGGAGTGGGGTGAGATACGGGACCTGGGGGACAGTTGGGGTTGGCTGTGCAGAACCCTGCCTATTCCTAAACATCTGTCCCCACCTCAATCATCTAGGAGTCCCACGTGCCTTACCGGAACAGCAAACTGACCTACCTGCTGCAGAACTCTCTGGGTGGTAGTGCTAAGATGTGAGTGAAAGGGACAGATGGAAGGGGTCAGGTAGGAACTGT---GTTGGGGTGAGGGGTAG--AAAGGGGAACAGTGGAGACCT-GTCCAGGCTCTG-CTGGCCCCTAATGCTGGGGTTGGGCAC---ATTGTCTTTTCATAGGCTCATGTTTGTGAACATTTCTCCACTGGAAGAGAACGTCTCCGAGTCCCTCAACTCTCTACGCTTTGCCTCCAAGGTGCGATTACCACCCGTC---AGCCTTGTCAGGACCCGTGGGTGGTTGTAGGCTTCTCCATTCC-----------AATCCCTTTTGTCTTCTAGGGCAGGGAGCACATTTGTGCAGAAAGGTTTTGCA-------GGTATCTGAGGCACTGCTCACCTGGTTCCATTTTTAATTATTAGCTTTTGAGTTAAGT-TTTTTAAAAAACGGGTGATTA s canFam2.chr12 5819108 2519 + 75515492 TAGATGGAATTACTTGTCATTTATCAAATGATTTAATCATCTGTTTGGGGCAGTTTGCATATGCACTTCCCTCTTTGTGGAATGTTCCTTCCATTCTCTGTCTTTTTGTTGGCGTATTCCTATACTTTTGGGT------------ATCATTGTCCTTGTGCCCCTTTTGGCTCTT-------TCCATAGCACTCCCTAATCTGGGACCCTGGTTCCT-ATTTTCTTACCT--CTTTCCCTGGCAGACTC---AGTCCCTGGGGACAGGGACCACCCTACCGCCACCACCCCACAT-CATCGTGACTTGTCCTTACTCCTCAGTG--TCTCACTCTCTCTGTCCATTCTGTTCC-----GGACAGAGGCGGTTGCAGGCATCAGAAGCAGCTCTGTCGGGCAGCCAAGCAGAGGTGGCATCTCTGCGCCAGGAGGCCACAAGCCAGGCGGCCCTCCTGGTGGAGCAAGGAGAACGTCTCCACGGGCTAGAGATGGAGCGCCGGCGACTACACAACCAGCTACAGGAACTCAAAGGCAACATCCGCGTGTTCTGCCGGGTCCGCCCTGTCCTTCCAGGGGAGCCCACCCCACCCCCTGGCTACCTCCTGTTTCCCTCTGGCCCTGGCGGGCCCGCTGATCTGCCCACACGCCTCAGCGTTTCCCGGTGTGATGAGCGCCGTGGGACCCTGAGTGGGGCGCCAGCCCCTGCCACCCGCCACGACTTCTCCTTTGACCGGGTATTCCCCCCAGGGAGTGGGCAGGATGAAGTGTTTGAGGAGATTGCCATGCTTGTCCAGTCAGCCCTGGACGGCTACCCAGTATGCATCTTTGCCTATGGCCAGACAGGCAGTGGCAAGACCTTCACAATGGAGGGTGGGCCTGGGAGAGACCCCCAGGTGGAGGGCCTGATCCCTCGGGCCCTGCGGCACCTCTTCTCCGTGGCCCAGGAGCTGGGCGGCCAGGGCTGGACCTACAGCTTTGTGGCAAGCTACGTGGAGATCTATAATGAGACTGTCCGAGACCTGCTGGCCACTGGGCCCCGGAAGGGCCAGGGCGGGGAGTGTGAGATCCGCCGGGCAGGGCCTGGGAGTGAGGAGCTTACTGTCACCAATGCCCGATACGTTCCTGTCTCCTGTGAGAAGGAGGTAAGGACTGAGGGCCTCTGGGGCTGGAGAACGGGGAAGAGCGGATGGAGGGGGCACAAGGTGCAGGTGGATGGA-AAAGGAACAGGAGAGAGTGGGAGGATGGAGGAAGGGCAGGTTGCGTGGGTGGGTGGTCACAT-CAGTTTTGGCCTATGGGCCACAGGATAAATTTGTCTGCCTTTGGGAACGAGGGGGTAGAGTGGTGCATGTGGC------CGAAGGCTTCCTGGCCCCCACCCACCGCATCTCAGGCCTCAT-TCCTACTATAGCT----CTAGCCGCTCTG-------------------------------------CTGTCTCCAGGCACT------gaagct----------gtccctggccatcttgtctaagattgcaaccctcaccctaccttcacacactcgttactttgctttattctcctccttggtactctcagacacaccgtgcattttacttagtcattttgcctcttcagtggctagaaag------aaagctTAGGGT--GCTCTGGTTCCTTGCTACTGACATAGCTGTCTGCTGATTCCCAGCCTGC--TTTTGCCCTTTGCTACCCCCA-CCCCAGGTGGAGGCCCTGCTCCATCTGGCCCACCAGAACCGGGCAGTGGCCCGCACGTCCCAGAATGAGCGATCATCTCGTAGTCACAGCGTGTTCCAGCTGCAGATCTCTGGGGAGCACACCGGACGAGGCCTGCAGTGTGGGGCCTCCCTCAACCTTGTGGACCTGGCTGGTAGTGAGCGGCTAGACCCCAGCTTAGCCCTTGGCCCTGGGGAGCGGGAACGCCTTCGGGAAACACAAGCCATTAACAGCAGCTTGTCCACCCTGGGGCTGGTCATCATGGCCTTGAGCAACAAGGTAGGAATGGGGATGAGGGCCAGT--GGGACCTGGGGTA-GGTTGGGGT--GCT-------------CCTA-TCCTAATCACCTATGTC--CTTCAACCCTCTAGGAGTCCCATATTCCTTACCGGAACAGCAAACTCACCTACCTGCTGCAGAACTCTCTGGGTGGCAGCGCTAAGATGTGAGTGAAAGGGACAGACAGAAGGGGTTGGCTGGAGACTGTGAGGCTGGGATCAGGGGTGGGAAAGGGGAAATAGTGGGAACCTGGTGCAGGCTCCACCCAGCCACTGATGTTGGGGTTTGGCTCCCACTTCTCTCTCTACAGGCTCATGTTCGTGAACATTTCTCCCCTAGAAGAGAACGTCTCTGAGTCCCTCAACTCCCTACGCTTTGCCTCCAAGGTGCAGTTACCACCAGGCCCAGGCCCTGTCAGGACTCCTGGATGCTTGTAGGCTTCTCCATTCTGACCCTTTAGGGATCCATTCAGTCCTTTAGGCCAAGG-GCACATTCATCTGGAAAGGATTCACATTTGCCGGGCATCTGGGACACTACCTCTCTGAATCCATTTTTAGCTATTGGGTTTTGGGGTTTTTATTTTTTAAAAATAGGTAGTTA a score=14654 s hg19.chr6_ssto_hap7 4855425 249 + 4928567 tccctaagattcctc-cctatcagcatacagagat-----cattatttttaggtctgccta-gactccactatgtagctgcaccaaaatttatccaccagttccctctactggacacttggattgtttccacactttttta-gtcacaaacaaggccacgttgactaactttgtacataca--tcattttgtattt-ttcagttacatctaactagggaaatagtccttgaaatgggattactggatc---aaagacttaga---g s canFam2.chr12 5821873 264 + 75515492 ttcctgggattactctcccaccagcacacagagattaccccattattttgatgtctgcctaggactccgctgtgtggctgcaccaaagtttatccaccagttccctctactggacacttgggttgtttccactcttttctctattacaaacaaggccacgttgactaaccttatacatagatgtcattttgtatttgttcagttatagctatctagggagat--tcctggaaatgggattgctggatcataagagACTTGGATACg a score=19446 s hg19.chr6_ssto_hap7 4855674 694 + 4928567 gtttttcagactattccaaatagtgtgaattcagactccaaacctca--tgagggtcagccag-tggctat---atgaattctcactaatgagaattccttccactagaatctccttccactagtgttaagcaagtcagaaagtttccttactgtctgcctcc--acagtaatttttttctctggtacaccctcctcctgcgcgtatagccctttgatgggctctggctttatTTGAGG--TCTGATCAGGTCTGTCCTGCTG-TGCGCTTGGGCCTCCT-CCCAGTCAGCACTGATTGTTGCTGT-GGAGTAGCCAGCACCT---GCACCCTGATCTGGTATTCTACTTTGATGAGGGTTTCCCTCACTATCTTGCAAGTTCAATTTTAGAGGGTGGTGATGTTTTTTCTAACTttttattaatgttataccaatg----taacatccaacaacatgaa--ctttaatatcctctaatacccagtttatgttaaatttcacccaactgtctcagaagtgtcttttatacataataggtttgttcaaatcaggatccaggcaagggccacccacttgg------------------ttgaaatgtctcaagttccacaaccctatcccacactgccactattatgtcgt----------------ttgttgaa-------ggtcatttgtcctatagaatatac--tattctggattttggctggttgcttccTCTTTCCCCCATACTTTC----------------------------------------------------ACTTATTT s canFam2.chr12 5822325 733 + 75515492 GTTTTTCAGACCATTCCGAGTAGAGTGAATCCAGATTCCAAGACCCACTTAAACATTAAATAGAAGGCCATGCCATGAATTCTC---TAGGAGACTT-----------ATGCTCCTTTCAGT-----------------AAAGTTTCTTTACTGTCTGTCTCTGGAGGGTGATTTTTTTCTCTGG--CTGCTCCTTTCCAAAGGGATAGCCCTATGATGGGTTCTGGCTTTATTTAGGATCTCTGGGCAGGTGTGCCCTTCTGCTATATTCAGGTCTTCTCCCCAATAAGCATTGGTTGCTGCCATAGAAGTGGTCCATTCCCTAGGTACCCTGCCCTGATTTTCTGCTTTGATCAGGATTTCCCTTGCTATCTTGCAAGTTCA-----------------------------------ATtaaagttatagcaacgtcattaacagccaacaccataaactctttagtatccttaaattactatgtta--ttacattttacctgattgtatcagaaatgtcttt--aacatattaggtttgtcccaattgggatcaaagcaagggccacccatttcattttaattcttttattttttaaaatttcttttaatccgtaata--atctcac----ctccttttatgtctttttgttgttgttgttgttgttgaagaaatagggtcatttgtcttatagaaaataccatattctggattttggtcagttgcttcctcctccttccatactttttgttatctagtagtacacttaagggcttggatttgaatttgatttgaatcaggcttattt a score=8571 s hg19.chr6_ssto_hap7 4856368 245 + 4928567 ATCATATTTGGGTGTTGTCAACCTGACCCATCCATTTACAAGCTCCTTATTGACTT-----TTTCACCTAgtgattttatccagcagtgaccatacctggatct-ttatttcattaaggggtttctaaatggggatttttctaatcttagttgttctgcattggttagtcacgattcttttatgaag-acatttgccttgccatctacttggtttctctgaaattcaattcat---acaggaaaaacaagataaa s canFam2.chr12 5823380 236 + 75515492 ATCAGATTTGGGTGTTACCAGCTTG---TGACCATTTGAAAACTCCCTGTTGACCTAATGATTTCACTTAGTGATTTT-TGGAAtaatgatcgtacctagatttgttacttcatcaaggagttt---------aattt------tctcagtaactttacatttattagtcttgtctcttctacaaagaatttttcccttgccatttatttggttactctgaaatctagtctatgtagcagcaaaggcaggataaa a score=4124 s hg19.chr6_ssto_hap7 4856613 81 + 4928567 tgctgaattatttattgattttcagtatt--gagttgatatcctagcagcttccaaaggtgaccaa-tgaatgtttatctgagg s canFam2.chr12 5823790 84 + 75515492 TGTAGGAttctttatcaattttcagtattagaagttgatgtcttggcaacttccaaaggtgaccaagtgagttttggtttggga a score=3406 s hg19.chr6_ssto_hap7 4856825 55 + 4928567 Ccacagtcgttcttctttctgatgctcaaattgccccatctttagccaataggaa s canFam2.chr12 5823915 55 + 75515492 ttatagtcattattccttctgatgttcagattgccccgtcattggccaatgggag a score=71831 s hg19.chr6_ssto_hap7 4857185 1752 + 4928567 ctccttcagattggtgccagtgtcctttagacagaactctagtagtct---tttcagattcaacttgtacatttccttccccagacttcaactgatccattttctaaggagtcctagttcctAAATGGGTGTTATTACTATTTTATCTCGGTTTAAGTGTTTTACAGTGGGAGAGGTTGGAGGTCTCTAGTACAGGGTATTGCTGGAAATGAAAGCCTC--CTTTCTCTGCTCCTGTATTTTCTTCTGGGGCTTCCATCTCTTCTCAAGCCTTTTCACCTCCTCCAAACCTAGTGTG--CAGAGG----AGAACAAACCATAACTGGCACCAGCCTGAACCAGCCTTTGGAGGCCTTATTTCGGTA-TTTCTGAGGGCAGCCCTAGCATTGGAG--GATGGGAGATCTTGG-GAAAAATGTTGTATTGGTTACGCTGCAA--ACTTTTATCCTGTCTAACCCCCTGCCCCCAGGTGAACCAGTGTGTTATTGGTACTGCTCAGGCCAACAGGAAGTGAAGACGGATCCAGATCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCCCTATGTCTATGTATCGGGTGAGGGGTGGGAGGGTTGCTGGAGGGTGCTTTATTGGGTGGAGG---GCACCATGTCCCAGGGCTATCAAATAAAGAATAGTTTGGTTTTTTTTTTAAATAAAGGTTTTATTAGCATTTGCCCAAGAAGGCAGATACTTTCATATCTGTAAAAGTGGGAGCTGTGATCTGTACCCTCTGCCAAACGTTTACGTGGGAGGCGGGAGCGGGGGCTGAGGGCTTCGTCTTTTCTCCCCTCTGCTATCACCGGTTCTGGACCTTGGCCTGGATCATCTTCCCCTCTGCTAATACCCCCTACCCCGTCCGT-CACATCAGGGAGGTGTGCCCTCTAGCTATCCACGCCCCCTCCTTGGTCACTAGTTATAGGTAACTTTCACCCTTCCGCCGGCCACCCCAGCCCCAGGGAAGAACGTTCCTTTGGTGGGTGTCGGCAAATGGGGACCGGACCCCAGAGTCCAGAGGCGGGGCTAGCGCGCGCTCC--CAAACTGTTGGCTCTTTCCTCCCGTCCCGCCCTTTCCCTGCCTTTCCGTTCGAACGGCTGGGGCTCTGCCCGCTCGCTGCCCATTGGCTGGCTCTCGGTGGCGTCACCGCCTTGGGTCCTCGCGCCCTTCGTCTGCG--CCAGCCCTGGAAGCACGGGGCGGGACGTCCACGGGAAGCGGCGCGCACGCCCGCCGACTCCCTCGCGCCAACCGCCGACGGCCGCCGCCCGGTGAAGGAGGGGCTCAGTCCTCCCAGGTGCCGCGCGCAGGAGGGGACACGCGTGCGCAAAAGGGCGGTG-------GGTGGGGCGCGACTCGTCACGGGGAGGGCGGGGCTGGGGCTAACAGCGAGTGGAGGGCGGGGCGCGCGAGGGAGGAGGGCGTGGTGGGGGCATCGAGAAGGGTGAATGGAGGGCGGGGCTGTGAACTGGGGCCGGGGGGCGGGACTTGGAGTGACCATGGGG---GGTGGGGCAGCTAACGGATGTGGCATGGGGCGGGGGACCAGGCCGGAGGCGGGCTGCCGGGA--GGGGGGATTCCCTCGTGCCCCAAGGGCGAATCTCAGGTCGGAGGAAGGGGCTGAGGGGATTCCCTCTCCCACCGGGTC-CGACTCTTCGCTC-CCCAAGCCGCGGAGGGCCAGCCTCTTCTTCGGCGCCCTCCAGGCCTGTTGGAGGTGAGGGAGGTGGGGTGAGGTGGTG s canFam2.chr12 5823970 1589 + 75515492 ctcctttaagttggctcctgtgtcctttagacaggac-ccagtagtctttattctagactcatcttgtacctatcctg-cgtagacttgggatcatttattttccaaggagcctttgttcttAAAGGAGTGTTGTT-CTATCTAACTTA---TTAACAACTAAATGGTAGGA-AGGCTTGGGGTGTCCGGGCCATGGTATTGCTGGAAATGGAGGCTCCATCTATCTCTGCTCCTGTG--------TGTGGCTTCTATCCCTTCTCAGGCCTCTTCACTTCCTCCAGTCCTGGTGTGGTTAGTGGGCATAGACCTAACCTTAACTGAGACCAGGCTGAATCTGCCTTCAGAGCCTTTGTTTTAGTATTTTCTGAGGGCAGCCCCAATATTGGGGGTGGGGGGTGATCTTGGAGAAAACTGTTATTTTGGTTACTCACAAAATATTTTTATTCTA---AAACCTCTGCCCGCAGGTGAACCAGTGTGTTATTGGTACGGCCCAGGCTAACAGGAAATGAAGACAGATCCAGAT---------------------------------------------------CCTCTGTTTGGGAA-----GGGGGGGTGGGGGTGGCGCTGAAGGATGCTTTGTTGGGGGGAGGGGCGCTCTGTGACCTGGGTCTATCAAATAAAGAACAAGTT--TTTTTTCTTTAAATAAAGGTTTTGTTAACAATGGCC------------------CGTATCTGTAAAAATGGGAACTGTGGATCGTCTACTCTGCCGAGTATTTGTGTT----------TTGCAGAGCAAGGGTTTCAGCTTTTCTCTACCTGGCTATC-----TCCTGGA-----GACTAGATGGT----------------------TACCCTGGTTGTCCGCCTCTAGGAGATGTGCCCACTGGCCGACCGC-----------CGTCACTGGTT-----------------TGCCGCAGGCCA-CCCAGCTCCA-CGCGGAGAGCTCGTCTGGTGGGTGCGGGAAAGTGGAAG-------CCCGAGTCCAGAGGCCGGGCCAGCGAGCCCTCCTGCAAACTGCGGGCTCT------CCCTCCCGCTCTTTCCTTGCCGTCCCATTCGAAGAACTGGGGC-CGGCCCGCCCGCTGCCCATTGGCTGGCTCTCGGCGGCGTTACCGCCTC-GCTACTAGCTCTCCCGGTCCGTGTACCCGCCCTACAGGCGCTGGGTGGGC------------------TGCACGCCCGCTGACTCGCTCGCGCCAACCGCCAACGGCCACCGCCCGGCAAAGGAGGGGCTCGGTCCACCCAGGTGCCGCGCGCGGGAGGGGTCACGCATGCGCAGAAGCGCGGCGGCGGTGTGGCGGGGGGAGACTTACCACggggagggcggggccggggc-aaaggcgggaggaaggcggggcactcgagggaggagggcgtggcgggggcgacgggacgggtgaatggggggcggggtcgtgaactggggccgaggggcgggACTTGGAGTGACCATGGAGGTTGGGGGGGCAGTTAACGGATGTGGCATGGGGCGGGGG-CCAGGCTGGAGACCAGCTGCGGGGAAGGGGGGGATTCCCTGCTGCCCCGAGGGCGGATCTCC-CTCCGAGGAAGGGGCTGCAGGGATTCCCTCTCGCACTGGGTCTTGACTTTCCACCCGCCCCAGCCGTGGGGAGGCCGCCACCCGTTCGGCGCCCTCCAGGCCCGTTGGAGGTGAGGGAGGTGGGGTGAGGTGGTG a score=50611 s hg19.chr6_ssto_hap7 4859012 883 + 4928567 tcccctccctccctcccccccgccgcctcctcctccTGCCGCTGCCGCTGCTTTGGCTGCTGCGTCATACGCCCCAGAGCCGCCGGGACGGAGGGGCTGGGCCTGGGGACCCCCCGGCCTCCGCCTGCACGCCCCCCCACGCCCGGACGTGCCCTCTCCGCGCGGGGGACTCGCCTAGGTCTCCTACGTCTGCCCCTGCCCGGCTCCCGGCGGCCCCAGCTGTCACCGGTAAGGAGGCGGCAGGAGGCGC---TGGTGGGGGGCAGGGAgccgggggtcggcgcg--gggcgcgggcgggAGAGCCTCGCCGCCTTGGCCTCGGGTCCGGGCTGGGCCGACACAAGTCCCTTCTCGGACTTGCCGTCCTGGGGAGTAGAGACCGGGACTGGGACACGCCCCCCTCCCGGGGCACTCAGAGAAGTTGTCTAACCCGGGGG-CAGGGAGCCCCGAATTTGAGGGTGACCTGACATAACCTGGCACCAGGATGATTGTTCTTAATGAGACGCGCAGGCCTGGGGAGACAGCCGTTTCTGCTCTGGAAAACATCTCCAGAAAAGGTCCCAAAACACG-TCTCTGGGCAACAGGACACCCTAATTATGATACCTCTAAACTGA----------------------GTAGCCTTTGCTTCTACAACCATAATTTCTCCTAAAATTTCAAGGCCAGTATATAATATCCCAGGAGAGCTCTGGAAGCTGGGAAACTAGC-AACTAGGTTTGGGGTCGGGGGGAGGGCTGTTAGTTACCGAGAGGAGAGCCAGTCACTAGAGTTGGAAGA---GGACTCAAAAAGCTGGTGATGGGTGCCCAGTGGTTTCCTATCAAGGTGTCTCAGGGATTTGGAGA-TGGGGGCACAGATACTTCATTCTTGATGGCAAAATAGGCAAAGAAAA s canFam2.chr12 5825669 875 + 75515492 TTTCCTCCCTCCCTCCATCTTCCCGCAGCTCTCT----------GCGCTGCGCTGTTGGGTGTGGTCTACG-CCCAGAGT--GCAGGACG--AGGGCT-GGCCTGGGA--CCCCCGGCCCTTGCCTGCCCGCCCTCCGACGCCCAGACGTGCCCTCCCCGCGCGGGGGGTTCGCCTCGGTCTCCCACGTCTGCCTCTGCCCGGCTCCCGGCGGCCCCAGCTGTCACTGGTAAGGAggcggcgggaggcgcccgtgggggggggcagggagccgggggtcggcgcgcagggcgcgggcgggAGAGCCTCGCCGCCCAGGCATCAGCT-CGCGCTGGGCTGACTCAAGTCCCCTCTCGGACTCGCTGTCCTGGGGAGTAGAGACCGGGACTGGGACACGCCCCCCTCCCAGGGCACTCAAGGAAGTTATCTAACCCGGGGGACAGGGAGCCCCGTATTTGAGGGTGACCTGCCATAACCTGGCATCGGGATTATTGTTCT---GGAGACACAGGGGCCCGGGGAGGCAGCCGTTTCTAATTTGGAAAACATTTCCAGAAAAGCTCCCAAAACACATTCTCTGGGTAGCAGAACACCCCAATTACAGTATCTCTAAACAGAAGGTGACAGTAGAAACTGAATGGTAACCTTTGCTTCTGCAACCATCATTCCTCCTAAAATCTCAAGGCCAGGATACAGTATCCCAGGGGAGCTCTGGAAGCTGGGAAACTAGAGAACTAGGTTGGGGGGTGGGGGG-----TGTTAGG----GAGAGGAGAGCCAGTCACCAGAGTTGGAAAAGCTGGAGTCATGAAGCTTGGGAGGGGTGCTGTGTGATTTCCTATCCAGGTATTTCA--TATTTGGAGACTGGTAGCACAGCTGCTTGAGTCCTTG---------AGGCATAGAAAA a score=462032 s hg19.chr6_ssto_hap7 4860216 7985 + 4928567 TGGGGAAGGTTTCTCAGCATTCATAACCTTCTCCTCCCCATTTCTTTTCTGGCTAG---GCCCCCCCAGGATGCAATGGCGCAGCCCCCCCGGCTGAGCCGCTCTGGTGCCTCCTCACTTTGGGACCCAGCTTCTCCTGCTCCCACCTCTGGCCCCAGGCCTCGGCTTTGGGAGGGTCAAGATGTGCTGGCCAGATGGACTGATGGGCTGCTATACTTGGGTACCATCAAAAAGGTAAGACCTTCTACCTCTG-------ACCTTCTTCCTAGTTCCCTTATCTAATTCTGGTTCCCATTTCATCCTGTTTGCTCACCCATTCCAGGTGGACAGTGCTAGGGAGGTGTGTCTGGTCCAGTTTGAGGATGATTCGCAGTTTCTGGTTCTATGGAAAGACATTAGCCCTGGTAAGACTCTAGAGACCTGAGATTGCACATCCCATGGAAAAC--AAACCTGGCCTAGAGGGGCAGAAAGAGACTTAAAGGCAGGCCCTGTGACACTGTGTTCTCTCACAGCTGCCCTCCCTGGAGAGGAACTCCTCTGTTGTGTCTGTCGCTCTGAGACTGTGGTCCCTGGGAACCGGCTGGTCAGCTGTGAGAAGTGTCGCCATGGTGAGAGGGCAGGTCACCTGAATGGTCCAGCTTGC--------------------------TCTTCCCTCCAGGA-TGGTCTCTATATCACCTGTCCTGGCCTTAGTCCCCAAGCCACTGCTCTGGCCAGGCTGCTTAGCCTTATCTTAGTCCTCATCCGCTTTCAGCCCAGGGAGAAGCAgccatggaaaggggtggtataacctttgcaggcagaagatggtttaaatgcatccttttctaaccatatgacctcggacaagtcccttaacctctaggagcctcagttccctgacttgtaaaataaggataatgcaccccct-catcaagaccatggtcagggattaaatgagatgggtaaagactattcctgtcccaataccaagcacacacaggta-----tgcaataagtggtctac------tattatCACTG--CAGCTTATCACCAGGACTGCCATGTTCCCAGGGCTCCAGCCCCTGGAGAGGGAGAGGGCACATCCTGGGTATGCCGCCAGTGTGTCTTTGCGATCGCCACCAAGGTAAAGGCACTTCCCTGTTACCCTTCCTGTGGGAGCCTCCCATCCACAGCCTCTCCCAAGCCTTTTCCTCTCCCCACCCCTCTGAAGCCACCCACCTGTCCTGTCTCTGCAGAGGGGAGGTGCCCTGAAGAAGGGCCCCTATGCCCGGGCCATGCTGGGTATGAAGCTTTCTCTGCCATATGGACTGAAGGGGCTGGACTGGGATGCTGGACATCTGAGCAACCGACAGCAGAGTTACTGTTACTGTGGTGGCCCTGGGGAGTGAGT-AATGAG-----AGGGGAGCAGACTG-------TGGAATGAATGATGTGGT-----GGTGGATCCCAGGAAATGAAGGAAAAAGAACAGGATGAGGGTAGCACTCAGG------GGGATAGGAGGTAAGTTTAGGGTTTGGGACAGTTATGGGGAAGGGGGTTTCTGGAGGCCAGAAGTCCTGTGTTCCCCCTCAGGTGGAACCTGAAAATGCTGCAGTGCCGGAGCTGCCTGCAGTGGTTCCATGAGGCCTGCACCCAGTGTCTGAGCAAGCCCCTCCTCTATGGGGACAGGTGAGACCAAGGCAGACTCTCTAGGAGCCAAGGATGCCCTCTTTCTTCGTGTTCCACCCTC-AGTTCTCCCACGCCCTTCTCCACTCCAGTCTCTTCCCAACCTCTGCAGCGTTACCTCACCTGTTTGCCCCGTCCTTGCTTGTGAGTCTTCCAGGGGATGGCACAGTTTTCCTGTGTAAGTGTGTTTGCTCCCTCTTGCCCATGTCCAGGTTCTATGAATTTGAATGCTGTGTGTGTCGCGGGGGCCCTGAGAAAGTCCGGAGACTACAGCTTCGCTGGTGAGCTGGATTGGGCATGACCTCAGTGTAACTCCACACCACAGTATTTCACTCTATATGCCCCAACCTCCCACCTCAGGACTCCCCTGGCTCTTAAAATGCCTCTGTGGTCTTGAAAACTTTGTTTTTCCAGGGTGGATGTGGCCCATCTTGTCCTGTATCACCTCAGTGTTTGCTGTAAGAAGAAATACTTTGATTTTGATCGTGAGATCCTCCCCTTCACTTCTGAGAATTGGGACAGTTTGCTCCTGGGGGAGGTAAGGGGTAGTGCAGTTTTGGGGGTTGGGATGGGACAGGGAGATGTAGCGGAAAGGGGAAGAGA-AGAAATCACTGCTCCCCTGGCCCCATTTTTCTTCATTTCTCCCAGCTTTCAGACACCCCCAAAGGAGAACGTTCTTCCAAGCTCCTCTCTGCTCTTAACAGCCACAAGGACCGGTGAGTTGGAGGGAAGAGGAGGCAAGGATGAGGCTCGGAAAGAGATGGAGA-------GTGGAAGCCTGGAAGGGGAGGGGCTTGCAACCCACCTGGAAGAC--TGACTGAAAAGGATTGAGGAATGGCGTAAGGAGGAACCGTTTTTTACAGCACTGACCCTATATCATTTCTCTTCTTGCCCCAGTTTCATTTCAGGGAGAGAGATTAAGAAGAGGAAATGTTTGTTTGGTCTCCATGCTCGGATGCCTCCCCCTGTGGAGCCCCCTACTGGAGATGGAGCACTCACCAGGTCACTGGTCCAGGGGGGATGGGGGAAATTCTCAGGGTGTTAGTCCTGGGGGGTATATGTATAGAGATGGGGAGGTCTTGGGGGTGTCCGGGAGGGGGCTGGGGGGATAAGGAGGCCTCTTACAGCTTCCCTTCAGGGCAGGGCCCTGGGGGAGGGGTCTCACGTCCCCTGGGGAAGCGCCGGAGGCCGGAGCCAGAGCCCCTGAGGAGGAGGCAGAAGGGGAAAGTGGAGGAGCTGGGGCCACCCTCAGCAGTGCGCAATCAGCCCGAGCCCCAGGAGCAGAGGGAGCGGGCTCATCTGCAGAGGGCACTGCAGGTACTGGAGCAGGGGGAACCCTATGGAG-CAAATGGTGGGGTGTGGGAAGGAGTCAAGGATTATCTCTCAGTCCTTTGCCCCCTCTTCTAGGCCTCAGTGTCTCCACCATCCCCCAGCCCTAACCAGAGTTACCAGGGCAGCAGCGGCTACAACTTCCGGCCCACAGATGCCCGCTGCCTGCCCAGGTCAGTGCTCCTCTGCCCCTCC---------------CCCACAAAATATGCTCC--CAATTATTCACATCTTCTGGACTTTATCACCCAGAATTCTTTTCCCTCTCCCCCTTGGCTACCCACTTCTTGGCCTAGACCGACTTCTAGAACTAGTGTCTGG-TAGCCAGTATTCTGGGGAAGGGAGTCCCTTGGGGGTAGTGTTTGAGCTCTGCACTTCCCAGGGGGAGAAGGTCCTGTTCCCCTGCTTCAGGTCCTGACTTTCCCCA-CTCCAACCCCAGCAGCCCCATCCGGATGTTTGCTTCCTTCCACCCTTCTGCCAGCACCGCAGGGACCTCTGGGGACAGTGGACCCCCAGACAGGTGAGATTCTGTCTTCTATTACCAGTGATGCTCTTCTTCCCCTCTATGTGCTCAAGGCTCTTAGTCTCTAA--------CACTGTTTCTCTGATTCACATGTGCTCTCCATTTCT-GCCCATTT---------------CTTACAATTGCCTTCTCTCCCTAGGTCACCCCTGGAACTTCACATTGGTTTCCCCACAGACATCCCTAAAAGTGCCCCCCACTCGATGACTGCCTCATCTTCCTCAGTTTCATCCCCATCCCCAGGTCTTCCTAGACGCTCAGCACCCCCTTCTCCCCTGTGCCGTAGTTTGTCTCCTGGGACTGGGGGAGGAGTCCGAGGTGGGGTTGGTTACCTGTCCCGAGGGGACCCTGTCCGGGTCCTTGCTCGGAGAGTACGGCCTGATGGCTCTGTGCAGTACCTGGTTGAGTGGGGAGGAGGGGGCATCTTCTGAACAGCCTGCCTCTGCCCAGCTCCCCATTCACACACACCGGCACTTTCATACCCTGACCTCTGACCTCACCTACAGCTGGGATGTACCTGGAGAGATAGGGGG-TAGTTCTCCCTACTGCCCAGGCTGGAATCCAAGAGTGGGGAGTGGGGAAGAGG--CCCTCTTCTCTACCCTCCTTCATGATTCCTGACCCCTC--CCATC---CTTCCCATTTCCTTTGATGTTATTTTGTTACAGCtttttaaatattttttaaaattatttaaCCCCTGGGGGCAGAGACTGAGGAGGGAGG--ATGATAAGGGATCCCGGACTCTGTATGATTGAAATAAAGAGAAATAAACAAATCTAGCAGCTCTGAGTCATTCTGAAAGATGTAGAGAATA-CAGGGACTAGAAGCACTTATATTCTCCCAA--CAAATTTGCATACATGACAAAAAACAGGCAAAAGGCAGAGAGACCCAAAGACGGGATTTATTGGGGGCCCAGTCATCACCTGGAAGTCAGAAGGCGTTGAAGTAT-CGCGGGGATCTTCATGATGAGCAGGAACAGGGCTCATCATGGCAGGACTGTGATAGAGTCAGAAACTGACTCTGTGACCTGGCGCACCCACTGCAGGTACGGAAAGTTCCCCTGTTCCACAGGCAATGCAATTACCTCGGCCACTTCGTAAGGGTGCACAGAACTACAAAATAGGTGGGTGGGGGAAGGGGATCACTC-AAAGATTTACCCAAAAGAACCCACTCCCTTACACGCAAGCCCTAGACTGCCCAGCAAGT-CACACCCACACAGTACACACCCTCAC-CCCATCCATCTCAAAGTTCTCACCGAACAAAATCTGTCAAAGCTGGGACCAAGGAACTTTGGGTTTTAATCATCTAAGGGACAAAGATAAACATGGTTGAATCAAGGAGTGGGATTGAGTTCAGTTTCTCAGAAGAGGGGTAAGGGCTAAAGGGGTCAGGGATTGGGGATATTTTGTTGGGTGGGGGAAATGTTTCTCACCATCAGCACCTCACTGTCTTCCTCGATCTTCCCTTTCCACTCATAGCTGAAAGGTCAGAGGGGGAGAGTTGTGGGGAGCAAAGAATTTCCCCCAGGAAAGAGGTTCCCAGTCAGCTCCTACAGTTAGGTTAACCCCCCAACTCCTATGACTCACATGGATGTAATCTGAGGGATGAGGTTGACGCAGGCTGCTAGGCGCTTCTCCACCACGGCCCTGGA-GTGAAGAGACAGTCCCATTCAGAGTACCCCATAACCCCAGTTTTTGTACTGGCAGCCCAGAGACAGGCTTCCAGAGCTGGAGA--AAGGAGAAAGC-------AGCACTCTTCTGCCCCACCCCCAACTGTC-CCTTCATGATCATCCTTTCTCGCTGCACATCGAGG-TCCCTACCTGGCGATCTCCTTGGCGACCTTCTCGTTGGGGCAAGTAACAAAGGCTGCAGAGACCGAGCCCGGAACGTAGCCAGAGCCGGAATCCGAGGCCGGCGAGGGCTGGGTCGGAGGGCTTCCAGAGGCCATGGTCAGCAAGACTCGGGGTAGCAACAAAAGGCGGGAGGCCACAGGCAGCAGCGCCGGCATCCAAACAAAAGACAGGAGCAGAGAGGCCTGAGAGCAGGAGGCGAATTCGATCTCTCCTCACAAACAGCCCAGGAAATTACACCCGGGGAAGCCTTCGCTTAGATCCTCAGGCTCTGCCCTCCCTCTGATGCACCCC--CGAAGAATGCCCCTGAAGGTGAGAGAGAAACTTGG-AAAATAAAGCAAAAGCTCATTTCACTCACACCTCAGGGGGCCAACCTCTGGGATTTAGGGTGCGGGTAGCGGTCGAGGCTTCGAGGACCGGAAGGGGCGGGGCGGGGCCGGTCACTCACCACTCCGCCGAGCAGGACCGCGGGAGCCCGCCCCCCACTCATGCGGCCTACGCTGGTACAGGAGAGTTG-ATCTCAAAGGCCACACGTCACACGGAGAAA------CAACCCCAGGAAGAGCGGCCTCTTCTTACCTGGGTGGCAGCCACGTGATTAGAAAACAGCGCGCACCATGTGACAGTAGAAGAAGGACCACCTGCGCCTCCAGAGCCAGCCAATCCCGACCCTATCATGGCGCGGTTTG-CCCACCTCCTGATGAAGGAGGAGCCATGGGAGACTTGACCAATCGACTACCGCATCTGCAGACGTGCGCGGAAATGGCACGCCCGTTTCCGTGTGAACCCGAAACTGCCACTTGCTGGCTGAGGAGAGCCGCTGCGGCGTTCCACTGTCACGTGAGGGGGCCGGTCCTCTTC-GGCGGCGGCA-CTCAGTGAGTGACGCCAAGTGGCCAATCACAGGCCAGCCTCGCAGGCCACGTGAGGCGAGAGCTGGTTCCAGGAAAGGGGGGCCAGAGACCCCGCAGAGTCGATGCGTCAGGCTGTGGAGTGGGGAATCATCCTTAAACCCCACAATGTGCCTAGTGACCTCCCCTGCACTGTTTCCGAGGTCTTAAGGAGTGGGAGGGTCTGAGAAGGACCCTTCACCCCAAACTCAGGGGTTAAGAGAGCGCCCCCTGCCCTTTTAGTTGGGCAGAGATATGCCTGGGTTTGGGAATGAACAACGGTGATCT-AGAAGCCCGCTGTCCCTGGGTAGCAGGGAGTGATTAGGCAGGCACGGGCATGGCAAGACAATAGCTAGCTGAGGAAAGAAGCATTTTAAAA-CAGAGCGAGACCCTGT------GGTAGAGGATGGTGAAAATGGGGC----------CTAGCCATCTTAATTGAAAACCCAAAGCTTGAGACAGACTACTGAATCAGAGGG--AAGGAGAACGAGGGCTGCAGGATGGG----------------GACAGTGGTGATGGTCCTTCTGTCCCCT-CTTCCCTGCCTATTCCACTCCCCAGGATTGGTCCACCTCTCAGCCTCGGGTCTCCTTTCCCTAACCCATCCCCCAAGGAGCCAGGACCTGCCCTACATAACTTCCCTGGGGCCCAAGCACATCCTGTGACCCAAAAATGGAGAGAGGGGCCAATGAGAGGCAGAGA--GGTGGGAGGAGGTGCAG-AGAAAAAAG-CTCTTGCCACTGCCCCCACCCAATATTTCCCCTCCCTTCAAGGTCTGAGGTCATTGGTCTGGT-GGTGGGGATGCCTCGGAGTTTCCCAGGCTGACGTCAGGGTTATACCTCTCGGAGGTTCTAGGGCAGGGAAGTGGGGAGGGGAGGTTCCCTGAGATCTCTGTCTTTGAGTTTGGAGTTTGTCTCTGAGACAGATTTCGGAGGGGTCTTTCAGTATTTGTGTGGAGATCTTTCTTAGGATTGAGTTTCCTTTTATGCTTCTGGTTTGGGGGGTTTCTATGTTTCAGGGTCTGTGGTCGCACTCT---GAGGTCTTTCGAAGTCTTCTTCATGAATTT-TGGGTCTCTGAGTTGTCCATCTCCGGACCAGCTGAA-GTCTCTATCTCCCCTT--------------------------AAGTCAGGAGTGTCTCTGTCTC-----TAAGTTATCAG----------------------TCTCTGAGATCTGAGTCTGGGGTC-----TCTTTCTAGGTCTGAGTTCTCTAAGCTCTAATTCTACATCTGGCTCTTTCTGAATCTGGGCCTCATCTTTTTC--TGAGTCTAGGTCTCAGGTCCTGGTCCCTGAAATCATCATCTCAGGGTCTGGAGTCTAAGATATCTGTAGGTATGGAGAACCCTTTTTAGACTGGATTTTCAGATTTTGATATTGAGCTTCTCTCTC--TGGGGGATCTGGGGTCGTTTTTT--------------CCTCAAATCAGGAGTCTCTTTTCCTCTAGATTTT-GGCCCTGTGTCTCAAATTACCCCACA-----GTGGGGGGTGGTGAAGTATCTTTCTCTGTGGGTCTAGGGTCTCTCTGTCTCAGGGTCTGGGGTCTGCATCTTTAGGAC----CTCTGTCTCTCTCTGGTGTGTTTTTGAGTCAGGGGTCTCTCTCTCTCTCACAATCTGGGCCTCCCGGAGTAGGGGTGGGGGCTGCAGAGTctctccctcctcctcctcctcctgctctcttcgctctcgctcgctcccccg--ccccccctctctctcGGCTGCCGCTGCTGCCGTTGGCTCTTATtctcctcctcctcctcctctctcctcctctctgcttctctctgctcctctctcctcc-tctctcctcctcctcctcct s canFam2.chr12 5826545 7997 + 75515492 TGGGGACAGTTTCTCAACATTCATAACCTTCT----CCCATCCCACTTCTGGATAGCCCCCCCCCCCAGGATGCAATGGCACAGCCCCCCCGGCTGAGCCGCTCTGGTGCCCCCCCACTTTGGGACCCAGCCTCCCCTGCTCCCACCTCAGGCCCCAGGCCTCGACTTTGGGAGGGTCAAGATGTGCTGGCCAGGTGGACGGATGGACTGCTATACTTGGGGACCATCAAGAAAGTAAGACCTTTGACTTCTGACTTATTACCTTCCCCCCATTCTCCTTATGTAGTTCCGATTCCTGTTTCATCTCCTGTGCTCATCCATTCCAGGTGGACAGTTCCCGGGAGGTGTGTCTGGTCCAGTTTGAGGACGATTCCCAGTTTCTGGTTCTATGGAAAGACATTAGCCCTGGTGAGACCTTAGAGGCCCAAATATATGCATGCTGTGGAAAGCAGAAACCTGGCTTGGGGGATGTAAAGGGGGCTTAAGGACAGGCCCCACAACAC--TGTTCCCTCACAGCTGCCCTCCCCGGGGAGGAACTCCTCTGCTGTGTCTGTCGCTCTGAGACTGTGGTCCCTGGAAACCGGCTGGTCAGCTGTGAGAAGTGTCGCCACGGTGAGAGGGCAGGATACCTAAATGGTCTAGCTTGCCCTGAACCTTCCAGGCTGCCTCTAAGTCTTCCCTCCACCACTGATCCTTAGGCCACCTGTCCTGG-CTGAGTCCCCAAGCCACTGCTCTGGCCAGTCTGCTCAACTCTGT----AACCT----CTCTTCCAGCAcagggagaaatagccatggaatcaggaggtgtgggctttgtagacagaggatggttcaaataca-cctttactaaccataaaaccttgggcaaattcccaagcccctaggagcct--gtctcctcacctgtaaaataagggtaacttatctactgcagccagatcacagtcaaagatgaaatgaggt-ggcccagactcctcctatcccagtcactagcacacacaggtatattgtgcaataaatggtCTACCATCAATATTATCATTATTCAGCTTATCACCAGGACTGCCACGTTCCAAGAGCCCCAGCCCCTGGAGAGGGAGAGGGCACATCCTGGGTCTGTCGCCAGTGTGTCTTTGCCATTGCCACCAAGGTAAGGTCA------------CCATTCTGTGGGAGCCTCCC--CCACCACCTCTCCCAAGCC-TTCCTGTTCCCTACCCGTCTGAGG----TGGCCTGTTTCCTCCCTGCAGAGGGGGGGTGCACTGAAGAAGGGCCCCTATGCCCGGGCCATGCTGGGCATGAAGCTGTCACTGCCATATGGACTAAAGGGGCTAGACTGGGACGCTGGACATCTGAGCAACCGACAGCAGAGCTACTGTTACTGTGGTGGCCCTGGGGAGTGAGTAAATGAGGGACAGGGGTGGAGGAGTGGTGGGGAGGGAATGAATGATGGAGTGGGTGGGGGGATCCTGGGGAATGAAGGAGAAAAAATAGGATGAAGGGAGTGCTGAAGAAAGCAGAAGTAGGTGGTGAG--TAGGGTTTGGGGCCATTCAGGTCGGGGCAGTGTCTGGAGGTCACCAGTCCTGTGTTCCCTCTCAGGTGGAACCTGAAAATGTTGCAGTGCCAGAGCTGCCTGCAGTGGTTCCATGAGGCCTGCACCCAGTGTCTGAGCAAGCCGCTCCTCTACGGGGACAGGTGAGA-TGGGGCTGGCTCTCTGGGAGCCAAGGGAGAATACTCTTGCCCTGCTCTACCCTCTCAGGCCCCCATG--CTGCTTCAGCTCCATGTCTCCCCAGCCTCTGAAGC-TCACCTCCCCTACGCACCCCATCCTTATTCATAAGTCCTCCA-----------------------------CGCTCTCTCCCCCTCGCCCACTTCCAGGTTCTACGAGTTCGAATGCTGTGTGTGTCGGGGTGGCCCTGAGAAGGTCAGGAGGCTACAGCTTCGCTGGTGAG------TGGGCACCACCTCCACATGGCTCCTC-TCTCAGCAC-------------CCCCAGCCTCCCACCTT-GGGCTCTCCAGGCTTTTGTATTGAC------------AAATCATTATTTCTCCAGGGTGGATGTGGCCCATCTCGTCCTCTATCACCTCAGCGTTTGCTGTAAGAAAAAATACTTTGATTTTGACCGCGAGATCCTCCCCTTCACCTCTGAGAATTGGGACAGTTTGCTCCTCGGGGAGGTAAGGGGTATTGAGGCTTTGGGGGTGAGAGTGGAACAGGGAAGGATGGAGAAAGGGAGAAGGGAGAGGGACTACTTCTCCCCTGATCCCATTCTCCTT------TCCCAGCTCTCAGACACCCCCAAGGGAGAACGTTCTTCCAAACTCCTCTCTGCTCTCAACAGCCACAAAGACCGGTGAGTTGGA-----------------AAGAGGTTCAGAAAGAAATGCAGACGCAAATATGGAAGCCTGGGAGGGAAGGGGC-TGCGACTCACCTGGAAGATCATCTCTGAAAAAGATTGAATAATAGCATCA-GAGGGGCCCTTTATTATGGCACTGACCCTATATCATTTCTTTTCTCACCCCAGTTTCATTTCAGGGAGGGAGATTAAGAAGAGGAAATGCTTGTTTGGTCTCCATGCTCGGATCCCTCCCCCTGTGGAGCCCCTTACTGGAGACAGAGCCCCCACCAGGTCACTGGTCCAGGGAGGAT-GGGGAAGTTCTCAGGGTATTAATGGAGGGAGGCATATGTATGGATATGGGGAGGTCTTTGGGGTGTCCGGGAGGGGGCTGGGGGGATAAGGAGGCCTCTTACAGCTTCCCTTCAGGGCAGGGCCCTGGGGGAGGGGTCTCACGTCCCCTGGGGAAGCGCCGGAGGCCGGAGCCAGAGCCCCTGAGGAGGAGGCAGAAGGGGAAAATGGAGGAGCTGGGGCCACCCTCAGCAGTGCGCAATCAGCCCGAGCCCCCGGAGCAAAGGGAGCGGGCTCGTCTGCAGAGGGCACTGCAGGTACAGGGGCAGGGGCACCCCCGTGGAGCCAAATGGT--GGTGTGGGAAGGAATCAAGGATTCCCTCTCAGTCCTTTGCTCCTTCTTCTAGGCCTCAGTGTCTCCACCATCCCCCAGCCCTAACCAGAGTTACCAGGGCAGCAGCGGCTACAACTTCCGGCCCACAGACGCCCGCTGCCTGCCCAGGTCAGTGCTCCTTCCTCATTCCAAGCAGATGCATGTACCCTTAGAATCT-CTCCTTCGATTGTCTACATCTTCTGGACTTTCTTACCCAGAATTATTGTCCGTCTCCCACTTGGCTACCCACTTCTTGTCCTAGAGATACTTCCAGAACCAATGTCTGGATCTCTAGTGTTCTGGGGATGGGGATTCCTTGGGG---CTGTTTGAGCTTTGCTCTTCTTCGTGGGAGAGGATCCTGTTCCCCTGCTTCGGGTCCTGACTTTCCCCCTCCCTAAACCCAGCAGTCCCATCCGGATGTTCGCTTCCTTCCACCCCTCTGCCAGCACCGCAGGGACCTCTGGGGATGGTGAACCCCCAGACAGGTGAGATTCTACC--CCTTTACCTGTGCCACCCCTCTTCACCTGTGTGCTCTTAAGTTCCTCAGTCTCTAATGTGATATCTTGGTGCCTCTGATTCACATGTCAGCTCCGTTTTTGGTCCATCCTTATCAGCATCTGGACTCACGATTGCCTTCTCTCCCTAGGTCACCCCTGGAACTTCACATTGGTTTCCCCACAGACATCCCTAAAAGTGCCCCCCACTCGATGACTGCCTCATCTTCCTCAGTCCCAGCCCCCTCCCCAGGTCTTCCTAGACGCTCTGCACCCCCTTCTCCCCTGTGCCGTAGTTTGTCTCCTGGGACTGGGGGAGGAGTCCGAGGTGGGGTTGGTTACCTATCCCGAGGGGACCCTGTCCGGGTCCTTGCTCGGAGAGTACGGCCTGATGGTTCTGTGCAGTACCTGGTTGAGTGGGGAGGTGGGGGCATCTTCTGAACAGCCTGCCTCTGCCTACTTCCCCATTCACACACACCGGCACTTTCATACCCTGACCTCTGACCTCACCTACAGCTGGGATGTACCTGGGGAGGTAGGGGGATAGTTCTCCCTACTGCCCAGGCTGGAATCCAGGTGAGGGGTCTGGGGAAGAGGCTCTCTCTTCTCTATTC-CCTTCCCGATTCCTGACCCTTCCTCCATCCCTCTTCCTATTTCCTTTGATGTTATTTTGTTACAGCtttttaaatattttttaaaattatttaaCCCCTGGGGACGGAGACTGAGGAGGGGGGGAATGATAAGGGGTCCCAGACTCTGTATGATTGAAATAAAGGTAAATAAACAAATCTAGCAGCCCTGGGTCATTCTGGAAGAT---GAGAACACCAGGGACTAGAAGCACTTCTAATCTTCCCAGCCAAATTCACATATGTGACA------AGGAAAAAGGCAGAGTGAACTACAGACAGGATTTATTAGGGGCCCAGTCATCACCTGGAAGTCA-AGGGCATTGAAGTATATGAGAGGAACAT-------GGCAGAGACAGGGTTCATCACGGTAGGGCTGTGCTGGAGTCTGAAACTGACTCTGTAACCTGGCGCACCCAATGCAGGTATGGGGAGTTCCCCTGCTCCACAGGCAATGCAATCACTTCAGCCACTTCATAAGGGTGCACAGAACTGTGGAA-AAATGGG-------AGGGGATCACTCAAAAGATATACCTAAAGGAGCCCCCAC-------------CCCGAGACCACCCAGCAAGTGCCCGACCCC------CACACCGTCATGGCTACCCACGTCAAAATTCTCACCGAATGAAATCTGTCAAAGCTGGAACCAAGGAACTTTGGGTTTTAATCATCTAAGAGGCAAAGATAAACATGACTGAATCAAGGAGTGGGGTTGATTCCAGGATATCAGATGAGGGAGAGGGATGA---GAGTCAGGGAATTGAG--GTTTCATCGGAT-GGGAAAATGTTTCTCACCATCAGCACCTCATTGTCTTCCTCAATCTTTCCTTTCCACTCATAGCTGAAAAGGT-TAGGGAGAGTGTT-TAGGGAGCAAAGATTGTCCTCAAGGAAAAGTACTGCCCATAAGCCCCTAAAATTAGGTTAACCCCCCAACTCC--TGACTCACATGGATGTAATCTGAGGGATGAGGTTAACGCAGGCTGCCAGCCGCTTCTCCACCACAGCCCTGAAGGTGAAGACAAAGCCTCATTCAGAACGCCCTATGACCTGACTTTCTGCACTGGCAGCCCAGAGACAGGGTTCCAAAGCCCGAGATCAGGCAGGAAGCTAGGGAGCGCACTCTT---TCCCACCCCCAACCCTCTCCGTCATGATCCTCCTTCCTGGCTCCACACTGAGGCCCCCCACCTGGCGATCTCCTTGGCGACCTTCTCGTTGGGGCAGGTGACAAAGGCTGCAGAGACAGAGCCGGGAACATAGCCGGAGCTTGAA------GCCGGCGAAGGCTGGGACGGGGGGCTTCCTGAAGCCATGGACAGCAGAGCTCGGGGTAGCAAAAGCAGGCGGGAGGCCACAGGCAACAGCGCCGGCATCCAAAGGAGAGACAGGAGCAGAGCGGCCTGAGAGCACGAAATGAACCTGGTGTCACCCCACAAGTACCCGAGGAAGTCGCATCTCGGGAACCCTTCCCTTGAATAGACAGGC-CTGCCCACCCTCTTCTGCACACCGAAGGAAAAGGTCCCTGAAGCTGGAAGAGAAACTTGGTTAACTAAGGCAGACTCGGCTTTCGCTCCCCCCTCA-GGAGCCAACCTCTAGGGTTTTGGGTGAGGGCGGTGGTCGAGGCTTCGAGGACCGGAA-----GGGGCGGGGCCGGTCACTCACCCCTCCGCCGAGCAGGATTGCGGGAGCCCGCCCTCCCCTCATGCAGCCTACGCTGGCA---GGGAGTTGAATACCAAAAACCGCACGGAACGCCGAGAAGGGACCCCAGACCCAGGAAGAGCGGCCTCTTCTTACCTGGGCAGCACCCACGTGATAAGAAAACCGCACACACCACGTGACAGTAGAAGCCGG---CCCCGAACCCCCAGAGCCCGCCAATCCTGGCCCTCACAGGGCCCGGTTTGCCCCGCCTCCTGCTGGGGGAGGAGCGAAAGGGAATTTGGCCAATCGGCAGCTGGATCTGCAGACGTGCACGGAAATGGCACGCGCGTTTCCGAGTAAACCGGAAACAGCCAATTGCGGCCTGAGGAGAGCCGCAGCGGCGTTCCACTGTCACGTGAGGGGGCCGGTCGTCTTCAGGCGGCCGTGCCTCAATGAGCTGCGCGAGGAGGCCAATCACAGGCCAGCCCCGCAGGCCACGTGACGAGAGACCTGGCGCTA-GAAAAGGGGGCTGGAGACCCCGCCGACTAGATGCGTCAGGTTGTGGCGTGGGGAGTCGTCCTTAACCCCCAGAGTGTGCCCAGTTACAGCCCCTGCGCTGTTCCCGAGGCCTTAAAGAGTGGGCGGGTCTGAGAAGA---------TCGAAGCTCAGGGGT--GGAGAGCGCCCCCTGCCTCTTTGGCCAGGACGACACATGCC-GGGTTGGGTGGTGAACCACGATAATCTGAGGAGCCAGCTGGCCCTGGGCAGGGGACAGTGATTAGGCAGGGATGGGCAATGCAAGACGATGGTCAGGTG-GGAAAGATGCATTTTAAAAGGACAGTGAGACCCTGTAAGTGGGATAAAGGGTGATGAAAATGGGGCTGAGGGCAATTCAGCCTTCCTAATTGAAACCCCAAAGGAGGAGACAGACTGGTGAAGGGGGGAGCCGAGGAGAGAGAGGGCTTCGGGTTGGGGTTATGGAGGACACAAGGAAGCAGTGATAGTCCTTTTGTCCCTTACTCTCCCTCCTATTTAACTCTCCCGGACTAGTGTACCTCTGAGTCTTGGGTCTCCTTCCCTTAACCCATCCCCCTAGGAGCCAGGACCTGTCCTACATAACTTCCCTGGGGCCCAAGCACATCCAGTGACCCAAAAATGGAGAGAGGGGCCAATGAGAGG-AGAGACCGGTGGGAGGGAG-GCAGCAGAGGAAAGCCTCTTGCCACTCCCCCTACCCAGTATTCCCCCTCCTTTCAAGTTTTGGGGTC-TCCACCTGCTGGGTGGGTGTGACTGGGTGTTGATCAGAGTTCTCTCATAGCTGCATCTC-----------------------TGAGGATGGGGTCTTCCT---GAACTCTGTCTTTGGGTTTGGAGTT----TCTGAGCTAGATCTCTGTAGGGCCTTTCAGTATTTGCAGTGGGATCTTTTTCCAGACCAAGTTTCCTTT--------TTGTTTTGGGAGTTTCTGTGTTTCTGGGAGCTTGATGACTCTTTCTCGAGGTCTTTCAAA---CTCTTTATGAGCTTGGGGGTCTCTGCATTTAACATCTCTGAGCTACATGAATATCTCTCCCTGCCCCTCTGCCTTCTCCCCATCCTCAAACCCCAGGTCTGGAGTTTCTCTGTCTCTTTCTTGAGTTATCAGTCTCGGAGTCTGCAGTTTCTTTTCTCTGCGATTTAAGTCTGGGGTCTGGTATCTCTCTGGATCTGAGTCCCCTAAGAACTAATTCTAGCTCTGTTTTTTTCTGAATCTGGATCTCATCTTTTTCTTTGACTCTAGGTCTCTGATCTTGGTTCCTGAAATCACTGTCT--GATTCTAGAGTCTAAGACTTCTGTGGCTGTGGAGAACCTTTTTGAAACTGGACACTCATATTTTGACCTCTGACCCTTCCCTCAATGGGGGACCCGGGGTCttttttttttttttttttttCTCTGAGATCA-GAGTCTCTTTTCCTCTAGATTTCAGGTTTTGTGCCTCAGATTAATCCCCACCCCTGGGGTGGGCAACAAGATATCTGT-------GGTCTGGGGTCTGTCAGTCTCGGGATCTGAGGTCTACATCTTTAGAACTGTACTCTCTCTCAGTCTGGTGTGTGTTTGAGTCAGGGGTCTCTCTC----------TCTGGTTCTCACTCAGTAGGGGTGGGGGCCGCAGAGtctctc---tctcctcctcctcctgctctctcctctcttgctcgctcccccgccccccccctctctcccGGGTGCCGCTGCTGCCGTTGGCTCCTATTctcctcctcctcctcctctctcctcctcTCCGGTCGTATCCGGTCCTAAATACTCCATATCTCCCACACCTTCCTCT a score=110058 s hg19.chr6_ssto_hap7 4868397 1899 + 4928567 ggggaggggcagggggcgggggagagtcggggccgagggaagggagcggctgaaatggagggagaggggaggaccgggaaggcaggggtgggagcaaccgggaaggagggattggaggccagagggataggggtagataagggatggaggggCCAGGAAATGGGCCTTGAAAGGGGGCTGAAGGGAAAATGATGAAGGGGAAAGAAAGCGCCAGAAAGGGGTGGGAAGGTAGAAGGATTGGGTTGGGGAAAAAGCTGCAGAAATAATTTGGGGGTGGGAGCTGAGTGATGAGGAAAACATCAAGGAAATAGAGGGACAGAGTCTTGGGAGAGGGGCTAGGAAGGAGAAATGAAAACATAGGGGTGAAAAGAGAAGCCAAGAAGATGTGGGGGGATAATTTGGTGGG-GGACTCAGAGTATGGTAaggggcggaaaaagagaggaggatggagggagagaag---gggccagatggagagagagggaggcagtggggggtgggggga-tggagggtccagatggagggaagagagaagagagagggaacgg--tgggggaggggagaccagggcagggggagggCCAAATTATGTGTGCTT---------GGGGGGGTGGCAGTACAAGTAAGATG-AAATGATGGGAGTAGGGGACAGGTTAGGATCCTGCCCCAGACTCTGACCCTCTTAAAGGCTCTTGACCAGTAAAATGTAACCTCTGGGGTCTTA-ATGCTGTCTTCACTTCATCACTTTTACCCCCTTCCCCCACCCCTCCAATCCTTATTTCCATTCCCCC-TCCCTCCTCTGCTGTCCATCACCTATATCTTTCCCCCCATATGGTGTCCGTTCCTTATATGAGTCCCCCTTCTGTCCTTCCCCTATATCAGTCCCCTCTCTGGTGTTCATTGCCTCTCTCTTATCTCTTTTCTATGTGGTCGCTCCCTTATATCTCTATCACTTCTTTACTAGTCCGTCTTGA-CCCCTTCTCATAGCCTCCGCATTAGGTCTGCCTCCTTTGCTCTGACACATGTCCAGTCGAGCCCTTCAGGTGTATTCCCTTGCCCCTGGGCATTTACCATCATTTCTGCCTCCTTTTCT-----ATCTACTCCTATTATTTGTCTCCCAGACCATTC-----------------------CTTGTCACCACAAGTCTGTGCCTACCCACTTTCCCTTAATACCTCAACTCTTATTATC-ATTTCTCTTTTCTTGTCTCCTCTACTTATTGGGGTGTTGGAGATTTGGGGTACAAATACACAGGTTTTGATGATTAGAACA---------AGGGATCCCCATCTCAGCCCTTGAGGGATTTCTCATCCTAGTAAAAATTTCCCGTTTCTCAGCCATGTTGCTCTGCCTCTTGCATCTGCCTCCCAGAATCATTCTTCACCAAGTCCAGACAGTATGTGTGTGTG-------TGTTTCTAGAGTTGTTCCTAAG-----------------TTCCCTGCTGCC-AGGAGAAAGATGCCCTCTGAAGTCTAACCCGCCTCCCT-TGGCTGCAGCCTGAACCAGCCCTTTCCCCAAATGCTTATGTGTATCAACAGATTTCTCCTCTGGGTATACCAAGTGTCTAAGTGCGGTGGGCATGTTGCCTGCAATGTCTGTAGTTTCAGAGGCTAGGTATTGGTGATCTCTGTATCTAGAGAACATTAGTTAG--TCTCTGAGATGGGT-TGAGATAG----AGTTTCAAAGTAT-GTGGTTTCTAAATGGTGGACATTCTGAGGGTTCATCGCTCACTGTGATCTGGAGGTTGGGTAAATTTGAGAGACATATTTATAGACAGAAAAGGGCTGAA--TTTGCAAAACTCTGCTACTCAGTGCATTCTGTTGGAATGAAGCTCAAAGACCAG----TTCTCCTGCAGTATACTCATGGTTATCCCATAAAGGTGACAGAGTTTGATCTTTTTTCCATCTAAA----------ATCTGATACCTTAAGCCTAA s canFam2.chr12 5834796 1978 + 75515492 GGGGTGGGG--GGGGGGGGAGCAGAGCCGGGGCC-AGGGAGGGGAGCAGCTGAAATGGAGGGAGAGAG-AGGACCGGGAAGGCTGGGATGGGAGCAGTGGGGAAGGAGAGATTGGAGGCCAGAGGG-TAGGGGTAGCTAGGGGCCGTAGGCGCCAGGAAACAGGCTTTGAA-GGGGGCTGAGGGGAAAATGATGAAGAGGAAATAGATCGCCAGAAATGG-TGGGAAGAGAGAAGGCTAGGGTTGGGGGAAGAGCTGCAGAAATAATTTGGAGGTAGGAGCTGAGAGATGAGGAAAATATTAAGGAAATAGGAGGACAGAGTCTTAGGAGAGGGGCTAGGAGGGAGAAATGAAAACATAGGGGTGAAAA---AAGCAAAGAAGATG-GGGGGTAGAATACGGTGGAAGGGCTCAgaggatggtagggggttgaagaagagaggaggatggagggaaagaagaaggggccagatggagagagagggaggcagtggggggtgggggaaatggagggtccagatggagggaagagag--gagagagggaatgggctgggggaggatagaccagggcagggggagggCCAAATTATGTGTGTGTTTATTGAGGGGGGAGGGGGCAATAGAAGTAAGATTTGAGTGATGGAAGTAGAGGACAGGTTAGGACCCTGTCCTAGACTCTGACCCTCCTTAAGGCCTTTGAGCAGTGAAATGTATCCCCTGGGGTCCTATCCGCTCCCTTCACTTCACCACTTTTACCCCCCTCCCCCACC--TCCAGTCCCTATTACCATTCCCCCCTCCCTCCTCTGGTGTCCCTCACCTATATCTTTCCCCCCATATGGTGTCCGTTCCTTATATGAGTCCCCCT-CTGTCCTTCCCTCATATCAGTCCTTTCTCTGGT--CCATTCTCTCTCCCT-----CTGTTCTATCTGGTAGCTCCCTTATATCTCTACCACCTCTTCACCTGTCCTTCATGATCCCCTTGTCTAAATACCCCTGTTAGGTGCACCTCGTTTCCTCTGCCCCATGTCCAGTTGGGCTCTTCTCGTATATTCCCTTGTCCCCAGGAATTTACTCTCATTTCTGCGTTCTTTTCTCTGAAATCTATCCCTGTGATTTGTCTCCCAGGCCATCCTCTGTCCCTGCCTCACTCCCCATCTTGTCACTGCAAATCTATGCCTACCCACTTTCCCCTAACACCTCAGCTCTTACCACCCATTCCTCTTTTCTTGTCTCCTCTACTTCCTGGGGTGTTGGAGATTTGGG-TGCAAAGAGGCAGGTTTTGATGGTTGGAACAGGGCCTACAAGGCATCCCCATCTGATCCCT-GTGGGACTTCTTATCCTAGTAAATTTTTCCCTTTCCTCAGCTGTGTTGGTCTGTCTCTTGCATCTGCCTCTCAGAATCATCCTTACTTAAGTCTAGACAGTATGTGTGTGTGGGGTGTATGTCTCCAGAGTGGCTTCTAAGCTAAGATCCCTGTATCCTTCCCTGCTCCCCAGGAGGAAGGTATCCCCTGAACTCTAACCTGCCTCCCTGTGGTTGCAGCCTGAACCAGCCCCT-CCAAGAATTATTAGATATATCAACAGATTTCTCCTCTGGGAGTCCTCAGAGTCTGAGTGCAGTGGGCATGTTGCCTGCAGTGTGTGCAGTCTCAGAGCCCAGGGACTGGTGATCTCTGTATCTGGCGGGTATCAGATGGAATCTCTGAGATGGCTCTAAGATGGTGAAAGTCTCAAAGTGTTGGGGTTTCTGAAGATTG--TATGCTAGGGGTTCATCTCTGACTCTTATTTGCAGTTTGGGTAAATTTGAAGAACACGTTTGTAGACAGAAAGGGGCTAGACTTTTCAAAAAGTTTCCTGTTCAACGTATTCAGTTACAGTGAAGTTTAAGGGCCAAGTTATTTTCCTGCACTGTACTCATGATTATCTTGTAAAGGTGACAGAATTTGATTCTTCTTCC-TCTAAATTGTTTCTCACTCTGATACCTTAAACCCAt a score=84415 s hg19.chr6_ssto_hap7 4870296 1646 + 4928567 TT----------TCTAGCTCTTTGCTGTCGCCAATGTGACATCTCTCTTACTTCAATAGGGCCTGT------------------GTGGCATTGGGGTTTAAAGGAGAGGCAGTTTGCAGGGAGAGCGGCATGGCAAGAACAACAGAGCTGGGGAAGGAGGACCCTGGTCTCATCTCAGC-CATAGGCGACACTTGGTCTACTGTTCTCTCTTCTCAAAGTTTTGTTCCCATCTCCAGCTCTTGTCTTTGGAGGCCCC-TCTGTGTCACCAGGCCTGGATATTCCATTCTTTCCCCCTGACATCTTTCTTCCTCAAGCTCCTCACTGTGCCTTGAGAAGGCTCCTGACCTATGGAGT-GGCTTCCATCCTGTCCACTGAGACTAGGTGGGGTGAGGTGGTGGGGGCAGTGTTGAATCTCTG-------GGCACTGAATGGGAGAAGAGATAAATTTGGTCTCTACTTGTCCAAACAAGGGCATATTTCCCACCT--------TCTGCCCTGGGGCCTCCACAGCCAGATGCCGACAAAAGCCATCTTCTCCTTACCACCAGAAGAACCAGAACTTTCCCTAAAGGATGAGCAGGGTTGAACTAGGGGAGGAGGGCACAGAGGAGGGAAGAGTTGGGAGGGGAGGCCCTCTCATGTCTCTGACTGTGAACAGGTAAGCTCCCCGACTTCTTCT--TTTCTAGATATTTAGCCCTCAGAATCTCATGATCCCAATGTTCCTACACACACACCCCATCCTTCTTTCCCACAGCCATGTAGCTTTCCTCATACTCTTTTATAGAGGGGTGGTGCCACCTTCC----AAGTCCTTGTCTTCTGCAGCTATTTGGATGCCTTCC-TCTACCCAGATATCTGACACCAACTTCTCTGT----TTTTCTCCTGCCAATTTTGCGGCACC-TCTACCTT---ATTTTCCTGAAGTAGATGGAGAGCTCCTTCATCTTTCTCTGCCCCCAAACGTGTACCTTCTCTGTCAT---ATAATTCCCATCCCTGAAC----CTCTGCATTTCTTCCCCCAAGTCTCCAGAGCCTTCTGTGATGTGAT----CCTCTCCTCTTTTCCCCTTTGTATAAATGCTTGTCTTGTGTTCCTTTAGA----GTTGCCAGGTGTCTCACTTTCAACTGTGATCTCCTGAAGGCCGGTAGGGTCCCCT--TCTCACTTTGTGGACTCTCTTCTTGCCATTTTAGGCCTCTGCTTCC-AAATGCATAGAGCCTCCCTTACTGTTTCTGTGTGTCTCTGTCCTCCAGATGTACGGGGACCCTCTATGCACCGAACCCAATACGTTCATTCCCCGTATGATCGTCCTGGTTGGAACCCTCGGTTCTGCATCATCTCGGGGAACCAGCTGCTCATGCTGGATGAGGATGAGGTGAGTGTGGTGAGAAGGCTGGGAAAACGCATGTGGG----------------------AGAATGGGGAGAGTCCTCATTAGTGAAGGGGAGAGAGACACAAAGAAGGCAGACAAAGAAGAAACATTTGCAAATGGC---AGGAGGGTGGCC------ATTGAGACTTGGGTTGGAGTGTGACAAGAGGGGTAGTCATTCTCTCATCTTGGGCAGGGAGTCTTTGAGGGTTATGAGCTGTGTTGGGGAGGAGATGTGGTTCTGAAGATTTCGGGGGTGGGGAGGCTCCTGTTTTCACACTGTCCATATTGTAGGATAGGTTAGAATGGGGAAGGGGAACTGAAGGGTTTGGA s canFam2.chr12 5836947 1721 + 75515492 TTAGACCCATTTTCTATCCCTTTAATGTCACCAATTTGATTTCCTTCTCACTTCCATAAGGCCTGTTGTTCCCTGTGATGGTGTGTGGCATTGGGATTTAAAAGAGAGACAGTTTGCAGGGATAGGGGATTGGGAAGAACAGCTAAATTGGGTAAG-ATGCCCCTGGGGGCACCTCTGAGCATGGGCAACGCTTGGTCTACTGTTCTTTTCT---AGAAGTTTGTCTGCATCCCCAGCTTGAGCTTTTGGAGGCCCCCTCTCCATC-CCAGGCCTGGATCTTCCTTTCTTCCTTCCC-----CTTTTTTCCTCAAGCTCCTCACTGTGCCTTGGAGAGGTTCCTCACCTGTGGAGTTGGCTTTCATCCTGTCTATGGAGACTAAGTGAAGAGAGG------GGGCAGTATAGAATCTCTGATCTCTGGGCATGGAGTGAGAGAAGAGATTGATTCAGTCTCTGTTCCTTCAAACAAAGGCATATTTCCTACCTCCTCACTCTCTAGCCGTGCCCCCCTATAGCCAGATGTTGACAAGACCTATCCTTCCCCTACCATCAGAAGAACCAGAACTTTCCCTAGAGGTTGAGCAGGGTTGGGCTAGGGGAGGAAAGAGCTGAGAATAGAGGGGA-GGCAGAAGAGGCCCTCTCCTGTCTCTGACTCTGAACAGGTCATCTCCCTCCCTTCCTCTCTTTTCCAGATGTTTAGCTCTCAGAATTTCAAGA-CCAAATATTCCTACACCCCTACCCCATCCTTCTTTCTCACAGCTGTGTAGCTTTTTCCACTCAGTTTTACAGCTGGG-GGAGCCACCTTCCCTCCAAGTCCTTATCTTCTGCAGTTGTCTAGATGCCCTCCCTCTTCCCTGTCCCCTGCCACCACCATCTGTGTGTGCTTTTCTTCTGCCAGTTCTGCTGTACCCTCAATCTTTTCATTTTTTGGACATGGATGGAGATCTTGACTATCTTTCTCTGCCTCTGAATGTGTACCCTCTGTGTCATGATATAATTCCCCTCCTGGAGCACCCCTCTGTATTTCTTTCCTCAAGTCTGCAGAGCCCCCTGTGATGTGATTTCCCCTCCTCTCCTTCCCCCCAGACATACAGGCTTATCTTCTGTTCCCTTAAAATAAGTTACCATGTGCTTCCCCCCCATCTGTGATCTC---AGGGCGGGTGGGGTCTCCTACTCCCACTTTGTGGACTCTTTTCTTGCCATTTTGGGCCTCTGTCTCCTAAGTGCATAGAACCTCCCTTACCGTTTCTGTGTGTCTCTGTCCCCTAGATGTTCGGGGACCCCCTATGCATCGAACCCAATACGTTCATTCCCCATATGATCGTCCTGGTTGGAACCCACGGTTCTGCATCATCTCGGGGAACCAGCTTCTCATGCTGGATGAGGATGAGGTGAGCAGAGTGGGAAGGCTGGGGAAAGACCTCTGGGTAGCATGGAGAATGTAGAGAGAAAGATAAGGAAAGGTTTCATTAGCGAAGGGGTGAGAGACACAGAGAAGGCA---AAAAGAGAAACATTTGCAAGCGGTCTGAGGAGGATGGCCACTGAGATTGAGATTTGGATTGGGGTGTG--CAAAAGTGCGGGCATTCTCTCACCTTGGCCAGGGGATCTTTCAGGGCCATGTGCAGTGTTGGGGAGGAGATGTGGTTCTGAAGACTTAGGGGT------GGCTCCTGTTGTAGCTCTGCCCAGATTATGGGATAGGTTAGGACAGGAAATAGAAAC--AAGGCCTGGGA a score=149080 s hg19.chr6_ssto_hap7 4872195 2998 + 4928567 TTTAGAGAGACACTGAGAGGGCTTCTGCAAGG---------GAGTGGTT--GGACATCAGGAAGGAA---TATAAGG---GAGGGGAACTGGGAGTATGTGGAGTTATCTAAAGGAGTACAAGTGGAGTAGGGGCAGGGACTAGCCAGAGTAAAGGAGATGAAAC--GGACAGAGGCCTCTTATGGGAGGTGGTGGCCAGGTATGGAGATCTGAGAGCCAGGGAAGTGTGGGTTCTGATTTGGGAGCTGGGTCAGCAG--GAGTGTCCATTGGAGGAAATAGAGGATAAAAACTGGAATGGTGC---CCCACAAGTGTGAGTCAGGGAATGGGGGTGATTTGGGGGACAAGCTTTAAAAAATGGTAGGGTAGCCTGGAAAACCAA--ACGTGGTGAGAGATGGACCCTGAAAGTTATTGGGAATGGTGTGATGAGGAAGGGTTAGAATTTGAGTCAGGGCTAACTAGAGTGTCAAGGGACCTATGGGGGCAGGTGAGAGTGTGGAGAGATGGCTGGGTAGACAGCTTCCAGGCCACAGAGTAAAGTAGAGGTGTTAAGGAGAGGATATGGTGACTTTGAAAGGAGAGGTGGCTTGGGGAGTCTAAGTTTTGGACACCATTGGGAGACATTTGAGTGACT-----GTGGTCAAACCCCTAGATCAAGGTTTGGAGTCTGTAGGAGAAATGGGGGAAACTGGAACCCA---GAGTGGGGACTGTTATAGGGATGAAGAGGGAAGACAATGGATTGGGGTAATGAAGGAATGACAGAGATAGGGACAGACTGAAGGGACCAGTGGCCAGCAAGTTGAGGGGCAATAGGAATGGCCGGTCTGGAGCAGGAAGGGCGTGTGTGTGGGAGGAGGAGTAGATAGAATTGGGAAAATGAGCAGCCTGAACAGACGCAGGGAGTTGGAATTGGATGGGTGGTGGAACTGGGGCTGGGGGATAGTGAGGGGTCTGTTCCTGTGGCTCTTTGTAGAGGTGGAGGAGACTGCAGGGGTGGAGGTGTATGGAGGTAGGGATGGAGGTGGACAGGGGGAGCTGGGTGTGAAGCTTAGGGAAAGGTGATGGCTGAGGGGAAGAAGGGAACTGAGAGATGCTGGGTCGGGTG--ATGGAAGGAGATGAAAGGTGGGGGAAGGTGACCAGGCCCTCTGGCGGGAG--GGGAGGTTGGGTCCCAGTCTGGCCGCAAGCCGGGCCGTGGGAGGGAGACAAGCTGTGGATCCTGATTATAAATGCAGCTTCTGCTACCCCCGTGACAGGCTCggagggagagaagggggtaagggaggtgggaggttgggaggaaagcagggagaatggaggaaCTGAAGGTCAAGGGAAAACTGGATTCAGGAAGTAGCTAACTTCTGAGGAGTTGCAGA-AGAGCTGAGTAGGGTTTGGGAGAATTCTCCGGAAGGTGTTTCAAGACAAATGGAGGGAGAAAAGAGGGTGGGACGGCAAAGAA-TGAGAGAGAGAGACTGGGGGAGAGAAGGGAGAGA--------------TCCAGTCACCAAG----TGTGGAGGGGCCGGGGCAGAAAAAGTGGGCAGGCTTAGGGGGA-----AAAGGAGGCCCGCCCTTCCTGGGAGGAGGCGGAGGGGGGAAGAGGGAGGGGAGGGGCGGCGTGGGCCAGGGAGGTCTGACACACCCCCACCTCCCCTAGATACACCCCCTACTGATCCGGGACCGGAGGAGCGAGTCCAGTCGCAACAAACTGCTGAGACGCACAGTCTCCGTGCCGGTGGAGGGGCGGCCCCACGGCGAGCATGGTACGGCGGCCGAGCAGGCTCTCATGACCCGGACAGGCGCGGGGAGAGGGCTGAAGATGGACCGGGCTGGCGGGGCGG---GGGCGTCGGGGAGCGGCGGGAGCTGGCCGGGGGCGGGAGAAGGCGGA---------------------GACAAAGTCTTGCTTCCCGAG--------------GGGAGATGGCGCCCTCCTCTGGAAGGTGGAGCGGGACAGGGGCTGTGGGTGAGAGGCCCCTGTGGGTCCTCGCTCGGCTTCGCTCCCTTTCTCCTCTCCAGCAGTGAAGTTTGACTATTTTCCTGGTGCTTGTAAAAATAGTCTCCTTAGATCTTTAGCTTCCAGTCCGTGTGTTCCTGCCCCTGCCCCTCCCAGCCCCTGGTCTGGGATCTTGGAAAGAATGACCTAGTTCCTGCCCT-------CCCCCCAGATCTCTTCCCCACCCCTATGCTCCTGATTCTTCTT----CCGGACCTTCAGTCCTTGAGG----TCTCCTTTTATTACCCCCTGTTTTCTCCTCTCATCAGCTGCTTCTATTTTCTGCAATTGTAT----CACCCTTTCTCTTTCCTCCCTGATTTCTCTTATTTTCTGTACCCCTCTTGATTACCCCGTC--GCTCCCCTCTGCTCCCGGCGAAAGTCCATCAGACTCCCATCTCATCTCCTT----TCTGTCTGTAGAGCTATCTGCGCGGtctgtctctccaactctctccctctctccatctgtctcttcccctccctccccctttctgccccccc----aaccccctctTTAGTCATTTAAAAAAAGATTTTTGTCTTCCTGAGAAGTTCGCTTAAAAGGTTTCCATGGGAACAGTGAGGGGAGATGAAGGCAGAGAACAGAGATCTGCAGCCAAGGTGCAGAGAGACGCCCTCAGCCCCCGGAAACCCCCTCGTCACTGCCCCCTTCCACTTCATTTCCCTTCCCGGACCTAGCGATCCAGGTTCCCCATTCCTCCAACCCCCAGGTGACCCCTTTTTCCCACCAGCTCCCCCTCCCTTCAGGAATTCAAGCTACCAGTTTCTCTCCCTT--AGAGAGCCAGTGACCT--GTCCCCATCCTTTGGCTCCTTCCAGCCTTCTGATAGGTCCAGGCCCTACTAGCCTTGTGGGCCGGTTTGGGGACCTTGGGTGGGTGGGTGGGTGGTCAGGGATGTGTGTCATTGTCATGGAAACCCCATACCATCGGGGTGTGTGGGTAGCACATCTCTGTGAGGCAAAGTCA-GGTGGTGGTGG----------------AGTGTATACAGAGAAtgtgtgtgatgtctgtcacatctgtgtgtatatgtatatgtgtgt s canFam2.chr12 5838885 2954 + 75515492 TTTAGAGAGAC--CAGTTGGGCTTTCACCAGGCACATCAATGGGGGGTCTGGGATATAAGGGAAGAGGTGCCTGGGGAATGAGGGGAACTGGAAGTAGGGGACATTTTCTGAAGAACTTCAAGTGGAA-GTTGGCAGGGACTAGTCAGAGTGTGGGAGCTGGGGCCCAGGCAGAG--CTGTTA----GAGTGGGGGTGGGGGGTGGGG----GGGTGGCGGGG------GGGTTCCAATT-GGGCACTGGGTCAGCAGCAGAGGACTCATCAGAGGAAACAGAGGGTACAGATATGAAAGGTAGATGCCCA-------GATTCAGGGAGTGGGGGTGATTTGGGTAACCTGCTTTAGAGAGTGATAGG-TAGCCTTGGAGACAGGTGAGGTCATGAGAGATGTGCTTCTGATCCTGTTGGGGAGGGTGTGGTGAGGCAGGGCTAGAATCAGAGTTGGGGTTAACCAGGGTTTGGAGGCACCTG-AGAGCCAAAGGAGAGTGTAGAGAG---GCTGGTTAGA--GCTTCCAGGTCACAGAGTGAAATCCAGGTGTCTAGGGGAGGACATGATGACTTTAAAGGCAGAGGTGGTTCAAAAGTCCCAAGTTTTAGGCA---TTGAGGGGCATTTGAGTGATTCACTAGTGGTTGTAGGTCTTGACCAAAGGTTGGAGTCTGTAGGATGAACTGGGGGAACTGGAACCAATAAGAGTGGGGATTGTTGTAAGGATGAGGG---------------TGGGGTAATGAAGGAATGA--GAGCTGGGCACAGGTCTGAG-----------------------------TGGGAATGGTGGGGGTGGA----------------------------------------TGGGGAGGTGAGCAGTGTGTAGAACCACACGGGGCTGGAAGTGGGTAGGCTGTGGATCTGGGGCTAGGGGCTAGCAAGGTGG-------GGTGGTTCTT-GTCCAGCTGGAGAAGATTGGAGGATTGGAA------------------------------------CTGGGGATGAGGCTCAGGGAGAGGGAATGGCTCAAGAGAAGGAGGCAAGTGACTGTGGTTGAGTGGGGGGCAAGGGAAGGAGATGAAGGGTGGGGGGAGGTGACCGGGCCCTCTGAGGGGAGCGGGGAGGTTGGGTCCCAGTCTGGCCGAAAGCCGGGCCGTGGGAGGGAGACAAGCTGTAGATCCTGATTATAAATGCAGCTTCTGCTACCCCCATGACaggcacggagggagggaaggtggtgagggaggtgggaggttgggagagaagcggggaCAATGGAGGAACTGAAGGTCAAGGGGAAAGGGGATTACCAGAGTAGCAGACTCCCCCGGGGTTGCGGGCATAGCTGAGTCGGCTTCGGGAGAATTTCCCGGAGGGGTTTTCAAAAGAAATGGAGGAA-AGAGGAGGGTGGGACGGGAGGGAAACGAGGGAGAGAGACTGGGAGAGAGTGGGGAGAAAGAAACCGACTCATCCCGAGACACTTGGAGTGTGTGCAGGGGCCGGGGCC--AAAGGTGGGCAGGCCCGGGGGGAGAGGAAAGGGAGGTTCCCATTTCTCGGT------------GGGAAAGGGAGAGGCGAAGGCCGGCCGGGGCCGGTGAGGTCTGACACACCCCCGCATCCCGTAGATACACCCCCTTCTGATCCGGGACCGGAGGAGCGAGTCCAGTCGCAACAAACTGCTGAGACGCACGGTCTCCGTGCCAGTGGAGGGGCGGCCCCACGGCGAGCATGGTACGGCGGCCGAGCAGGCTCTCGTGCCCTGGACAGTCGCGGGGACAGGGCTGGAGGTGGACGGGGCTGCAGGGGAGGGGTGGGGGTCGGGAA--AAAGAGAGCTGTCTAGGGGTGggaggaggaggaggaggaggaggaggagACGACGACACAGTCTCTCATCCCGCGAGTGGGAGCCTGGAAGGAGAAGGCGCCCTCTTCGGGGATCTGGAGCGGGACCGGGGTTGTGGGTGAGAGGCCCCAGT-GGTCTTTGCTCTGTTTCGCTCCCCTTTTCCTCTCCAGCAGTGAAGTTTGCCTGTTTTCCCGGTACTTATAAAAATAGTCTCCTTAGATCTTTAGCTTCCCGTCCCAGCGTTCCTGCCCCTGCCCCTCCCAGCCCTTGGTCTGGGATCGTGGAGAGAATGACCTAGTTCCTGCCCTTCCCCTCCCCCTCAGACCTTTGCCCAACCCCCACGCTCCCAATTCCTCTTCCAGCCAGACCTTCTGGCCTGTGGGCCCTCCTTCTTTTCTTGCCCCCTTTTCCCTCTTCTCTTCAGCTGCTTCTATTTTCTGCAGTCCTGTTCCCCCCCCCTTCTCTTTCCTCCCCAATTTCTCTTATTTTCCCCACCCCTCCTGATTTCCTCTTTCGGACCCCTCCTGGTCCCGGTGGAACTTCATCAGACCCCC-CATCATCTCCTTTCTGTCTGTCTGTGGAGCTATCTGCTCAGTCTGTCTCTCCAActctctccctctctccatctgtctcttcccctccctccctctttctGCCCCCCCTTCTACCCCCCTCTTTAGTCATTTAAAAAAAGATTTTTGTCTTCCTGAGAAGTTCGCTTAAAAGGTTTCCATGGGAACAGTGAGGAGAGATGAAGGCAGAGAACAGAGATCTGCAGCCAAGGTGCAGAGAGATGCCCTCGGCCCCCAGAAACCCCCTTGTCACTGCCATTTACCACTGCATTTCCCTTCCAGGA-CTAGGGATCCAGTTCCTCTATTCCCCCAACCCCT-GGTGACCCCTTTCTTCCACCAGCAACCCCTCCCCTCAGGAATCCAGTATCCCAGTTTCTCTTCCTCCAAGAGATCCAGTGGCCTTAGCTCCCTATATATAGCCC-------TCTTCTGATAGGCCCAGGTCTCATTGCCCTTGGGGGCCAGCTCTGGGACCTtgggtgggtgggtgggtgggCAGGGATGTGTGTCATTGTCATGGAAACCTCTGACCATGGGGGTGTGCAGATAGCACATTTCTGTGAAGCAAAACCAGggtggtggtggtggtggtggtggtagtggtgTGTACAGAGAATGCGTGTGATGTCTGTCACATCtgtgtgtgtgtgtgtgtgtgtgt a score=239167 s hg19.chr6_ssto_hap7 4876482 4041 + 4928567 TGCCCATGCTCGTGTCTCCTGTGTGTCGGTGCCATGTGCACACGGGGGCCCAGTTCCTCG--TGCACACATGTGCAGCCAGCCTTGTGCAAGTGTGTCCTGTCTTATCTTGCCTCTGCCTGTTTCCTGCCTAGGGGGCTGTTGGGCCAGCCACGGGCTTGTGGGGCAGTCCGCGGCCTTGCTGGTCCATGTCACCTCTGACCCTGAGCATGCATATCCCTGGCTGGGGCTCACCTCCTGTCAGGCTTCT-GTGTGTGGGAATGTGTGGCCCTATGAGCAGGATTTT-CTGTGTCCCTGGTGGCAGGTGTGTGTCTTTGCATGTGTGTTCCAGCACTGGCCTGAGTATCTGTGTCAATCCCAGCATGGGTGTCCAGGGCGTGTCTGGATGTGGGTGGTGTG------GCTGGGGGGAGTAA--GTGTGTGAATGTGTTCCTTGGAATTCTACTGTGTATGAAACACCTTTGGGCTGGGCAGGTGTAAGCCCTGC-TTGGTCAGTAAGTGGGGACAGAAAAGCTTAAaaagggaagaaatggggtaaagaggaaaagtggggaggggataggagagaaggaatgagagaggcttgaagaagagagcagagAGCAGCAGGCCAGGG-AGAAAGAATAGCTGGAGAATGGGAATGTGGGAGAAAGCCAAGCCAGACTTAGAAGAGAGAACAGGGGATAAGAGCTTAAGATGGGGAACTGGATAGAGATGGTGGGAGAAGAAGGGGTCTGGGAGCTGGGGAGGCAGTGGGGAGGAGAGAGTCAGGCCTTCTGGTAAAGTGATCTCTGAAAGAAGAAAGGGAAGAAGATGGGAGAAGGCACTGGATTCTTGTAGGCCTTGCAGGATCAGGCTTGGTTTTGGATCAGGGAAGGCCACTCAGGCATACGGGCTGGCTCACAGTGAGGCCTGTCATAGCAGGGACTGTCATTAGAGGTTCATATCCCCAGCACAGAGCTCTGTCTCCC---------ATTTCTCTGCTCTGTGTCCAACCCTGTTCTTCGCCCTTCTCTGGCAACCTCCCTCCTCTGGCTCCCCTTGAGAGCTGCCAGCTGGGTGTGGAGAGGAAGAAAGGCCAAAGGGAAGGTTAGGGATTTGG--------AGGGCAGGGGGAGATT-CTGTGGGTGATGGCAAGATTAGAGATGTTGGAGGGGCAGGAGTCCAAGCCCTTGCtgtgtgtgtgtgagtgccattgtgtgtgtacacagggtgtgtacatgtgtgggtgtgtgcacaatgcctgtgttacgggtttgtgtaggtggctgttatgtgtgtgcatgcgtgtatACATCGTGCAGGCATGGGACATGGAGACCCAGGATCACAGTTTGTGCTTTTCAGGTTTGCTGTGTGTGTGTGTACACGGGTGTGTGTTGTTTTCTCTGTACATGTCACTGCATGCAGCATTAATAACAGGATGTTCTGTGTTTCTGTCACTCTGCCCCCCCTTTCCTCTGTGTTTCTGCTATTCTTTTCCTGCGGCAACAAAAGTGTTTAATAAGCATATGTGTATGTGGCCTCTGTGTACCTGTGACTTATGAGTGAGTTCATGGATCTTAGTTCTTGGTAATATGTGTAAGGTTATATTACTTCCAAGAACCAAGCAAGCCAATTAGCAAATTTGTTCT---TCTGTTAATGCTTTAGTTCCAAAGCGGAATTTTAATGCATTTAAAGTTAGACTTTATGCCTTTATTAGATGAGCTTGCACATGAAAATAATGGCTGAGCTCGGTTCCCTGAAATGAGAGTGAGGCAGCCATACCTGAGAAATGCAGAAAAAATGTTACTAGGGAAGAGATATCCTGAACCATTGGATGCATTGCTTAGTGTGTACCAGAAGGATAATTAACACATTTGCTCCTGGTTTTTCTTTACTCTGGTGGCAATCTCGGATGCCTGTGTTAGAGTGAGAGAAGGGCTGGGGGAGGAAAGGGGGTTGTCCTGAGACAGAGTGGATGTGGTTGTACTTTTCACGTGAATGAAAGGATGTTTGTGCTTCTGAGATATGGGGATACCTTTCTGTGGTCAGGATCATGGTGTACTCAAGCATGTATTTCAGGGGTTAAACTGGAATTCCCC---------TGCATGGGGATATGTGTGTCTTAGGGTTATAGGTCCATTTCTGTAGTGTGCTGTCCACATGATTGCCCAAGAGACTTGGGCCACAAAGTCCACACCAGCAGCTCTCATGTGGGTCACTGGGTTCAAGTATGTACTCCCTTGTTGCAGAGCTCACATATGTCAAAGCATGTATCCTGTGGGG-TGTGTGGGCCTCAGGGTCTCAGAATGTGGATCCGTGCTATGCCCGTGCTCACAGTTGTCTGTATGTCTCAAAAGCACATAGATCCCCAGTTATTTTTCTGTATTGTGGTTCTCATATACACGTACCTCCACAGCTCAGTATATGTTTCTGTACTATACAC---CTGTTCCTGAGGGAGTGATAGGGTTCTCGTGTCATGGGGTCCACATTTTTGTATGCAAACCTCCTAACACCTGGGTTTTACAGGTAAAGGGAAGCTGAGGACTGATTCTAGGGCAGTTTGCAGGCAATTTGCAATTCTGGAAGCAGACAGTGAAAATATAATTGTGGTCCTCCCTTGTTCTGTTCTGGAACCTAGAGGGTTAACAGGCAGCTCTTCCGGTCC--ACCCCCCTCCTTCCAGCCTGTAGCTTCTTGTTGCCGTGGAGATGGTGGCCCCGCCCC-GATGCAGCACCTGCCCCCCCATTGGCTGCAGTGGTGACTGTGGGGCTGAGGGGGGAGCCCAGGCCTGGGCAGCCATTCTGGAGCTGGAGCCGGAGCTTGGCATCCCCCCACTTACATTCTCTTCCAGCCCCTCGGCCCCTCTAAATTCCCTTGCAGCCGAGCCTCAGCTTCCTTTTTC-AGCGCTTGCCATCCCTCTAGGCTCTTGGCAGACTGAGCTGCATCCGCATTCACCTCCCCTCCTCCTC---CTTTCCCTATCCTTACTTGGGAGTCCCGAGAACCCCCACTGTCCATCCTTCCTGCTCCCTGCCCATTCCCC--------TGCATTCTTTGCTTTTCCCCTCC-CCCCACCAACCTTCTGAGCCCCTGCCACTGCAGTGCACGTGGAACCGGCTCCTTCT--CCCTTCCCCCCACCTGCCCCTTCCTTGGATTTTCTGTCCCCAG-CTTCTCCCCCTGCTACTCTTCACAGGTCTCTTCCAAGACCTCCCCC-TCCAGTCCAGGGAGGGGGTCATGGGAGGCAGCCCTGGCCCTCCAGACAGACAGGGGTTCCAGGAGGTGGGGGGCAGGTGGAAGATGTGCCCACCAGGGGGAAGAGGAAAGCCTGCCTATGGGCAATGACCTTTAACCCATCTTTCCCCCCAGCTAGCCCCTTCTGGGGTGGGTGGGCACCAGGGACCTAGCCTCCCTGGATCTTTGGTGTCCTTC-ATTACTGGGGTTTTACTGACCCTCTCAGTCATGCTCCCCTGCTGACTGCCAGCCCCAGTCATGGGCCTAAGGCCTCCCACCCCATCCCCCTCAGGGGGCTCCTGCTCAGGTTCCTTGCCCCCTCCTTCCCGCTGCCAGCCTCTCCGCCGTCGCTGCTCTTCCTGCTGCTTTCCGGGGGGTAGGTGAGGCCGGAGCTGAGGGGCAGAGGGAGGTGGGGGCATGCACTGGGGTCAGGGGTGGGAACCTGGGTTAACAGCTTCCCTTCTGGCCCCCTCCCCAACTTCCCTTCTGGCCATTTCCTCCCCTCCAGAATACCACTTGGGTCGCTCGAGGAGGAAGAGTGTCCCAGGGGGGAAGCAGTACAGCATGGAGGGTGCCCCTGCTGCGCCCTTCCGGCCCTCGGTGAGTG---GTGCCTACCAGATGTGGCTCAGTTGGGCCCCCTCCCCTCCAGCCCCAACTGGGGCCCTAGGAGTCTgagaaagagggcaggagggggagagagggagtgagagtgagaaaaagagTGTGTGTCTGTGTGTGTCTCCCCACCTCTTTGGTTTCCCCCTTCTTGGCTCTGCCCCCCTGCTTCTGAGACCAGCCCTCCCACCTTCTCCAAGCtgtgtgtgtgtgtatatgtgtgtgtgtgtgtg s canFam2.chr12 5843038 3909 + 75515492 TGTCCATGCTCCTGTCGACCTTGTGTCAACGACATGAGTCCCCGGGGACCCAGTTCCTCAAAGGCACACTTGGGCAGTCAGCCGTGTGCAAGCTAGTCCTGTTTCATAGGGCCTCGGTTTGATACCTGCCAAGGAGGGTGCTGGGCGGGCCACTTGCCTATA------------------TTGATACATGTCGCGTCTGACCCTGAGCTTGCATGTCCCTGCGTAGGGCTCATCTCCAGTCAGTATCCTAGTGTGTAGGGATGTGTGGCTGCATGAACAGGATTTTTCTCTGTCCCTGGTGGCAGCTGTGTGTCTTTGCATGTGT--TCCATCATTGGCCTGGGTATCTGTGTCAATCCCAGCACGGGTGTCCAGGGCGTGTCTGGATGTGGGTGGTGTGCGAGTGGGGGAAGGGAGTGAATGTGTGTGAGTGGGTTTCTTGGAATCCTACTATGTGTGGAACACCTTTGGGCTGGGCAGGTGTGAGCCCCTCATCTGTCTGGGAGAGGGGGAAGAAAAGCTGAAAAGGAAAGGAGCAGGGAGAAAGTAGAAAAGTGGGGAGAAAGGAGGTGACGAGGAATGAGGGAGGCTTG-----------------------GCTAGGATAGAAGGACTAGCTGGAGAATGGGAATGTAGGAGATATTTAAGCCAGATTGAGGAGAAG------------AGAGCTTAAGATGGGGAACTGGATGGAAATGGAGAGAGAAG---GGGTCTGGGAGCTGGGGAGGTGGCGTGGGGAGAGCAGAAAGGCCTGTTCATAAGCTATCTCTTGAGAGAAGAAAAGGGGCAAAATGAGAG--GGCACTGG-CTGGTGTAGATTGTATAAGATCAGGCTTAGCT--GGATGAGGGATGGCCACTCAGGCATAGAGGCTGGCTCACGGTGAGGCCTGTCACCACAGGGACTGACATTAGAGTTTCCTGTCCTCAGCACAGAGTTTTGTCCCCCCACCCCCCTGTTTCTCTGCTCTGT--CCAACTCTGTTCCTCATCCTGCTCTGGCAGCCTCCCTCCT-TGGCTCTCCTCAAGAGCTGCCAGCTGGGTATGACAAGGAAGAAAGGCTGAAGGAAAGGTTAGGGATTTGGCGGATTGGAGGGCAGGGGGAGATTTCTGTGGGTGATGGCAAGATTAGACAGGTTGGAGAGGTGGGAGTCCAAGCCCTTGCtgtgtgtgtgagagtgcaattgtgtgtgtacacagggtgtgtacatgtgtgggtgtgtgcacaatgcctgtgttacgggtgtgtgtaggtggctgttatgtgtgtgcatgtgtgtatACATTGTGCAGGGAT---------------AGGATCACAGTGTAAACTTACCAGGTTTGCT---TGTATGTATACATGGGTTTGTGCTGTGTT-TCTGTACATGTCACTGAATGCAGCATCAATAACAGAATGTCCTGTGTTTCTGTCA--------------TCCTCTAC----------TTTCTTTCCCGTGCTAGTGAAAGTCTTTG-TAACCATATGTGTATGTGGCCTCCATGTACCTGTGACTTATGTGTGAGCTCCTGGATCTTAGTTCCTGGTAACATGT--AAGGTTATGTTACTTCCAAGAACCAAGTAAACCAGTTAGCAAATTTGTTCTCTTTCTGTCCATTCTTTAGTTCCAAAGCAAAATTTTAGTGGATTTGAAGTTTGTCTCTGTGCCCTTATTAGGGGAGCTTGCATATGAGAA--GTGGCTGAGTTTGGTTCTTTGGAATGGGGGTGAGGCAGCCATACCTGAGAAAGGCAGAAA--------CTAAGAAAAAGACTTGCTAACCCCTTAGATGCATTGTTTAGTGTGTCCTAGAAGGGTAATTGATGCATTTACTCAT--TTTTTCCTTCTTGGGAGAGCAATCATGGGTGCAGGCGTCAGAGTCAGAGAAGGGCTGGGGGAGAAGAAGGGATCGT-----GATGGAGTGGATATGGTCATACTTTTCATGTGAATGAA-GAATGTTTGTGCTTTTGGGGTACCAGGATACCTTGCTGTGATTGGGATCATGGTATATTCAAACATGTAGCTTAGAGATTAAACTGGCTTGTCgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgAGGGTTAGGTGTCCATTTCTGTAATGTGCTGCCCACATGATTGCCCAAGGGACTGGGGCCACAT-GTCCACACCAGCAG-----------GTGTCTGGGTCCAAATGTGTACTCCCCTGTTGCAGTGTTCACATATGTCTAAGCAT--ATCCCGTGGGGGTATGTGGGCCTCAAGGTCTCAGAATGTGGATCTGTGGCACTCCCCTGCTCACAGTTGTCTGTATGTCTCATAAGCACCTAGATCTC----TATTTTTTTGTATTGTGGTT---ATATACACGTACCCCCACAGTTCAGTGTGTGTTTCTGTGCTCTCTACACACTGTTCCCAAGGG-TTGCAAGGGTTCCTGCGTCATGGGGCCCACATTATTGTGTGCGGACCTTCTAACACCTGGGCTTTAGAGGCAAAGGGAAGCTGGAGACTGATTCTAGGGCAAGTTGCTGGTGATTTGCAATTCTGGAAGTAGACAGTGAAAATGTAGCTGTGGTCCTGCCTAGTTCTG-----GAACCTAGAGAGTTAACAGGCAGCTCTTCCGGTCCCCGCCCCCCCCCCCCCAGCCTGTAGCTTCTTGTTGCCTTGGAAATGGTAGCCCCGCCCCTGATGCAGCACCTGCCCCCCCATTGGCTGCAGTGGTGACTGTGGGGCTGAAGGGGGAGCCCAGGCCTGGGCAGCCATTCTGGAGCTAGAGCCGGAACTTGGCATGCCCCCACTTTCATTCTCCTCTAACCCCTTGGCCCCTCTAAATTCCCTGGCAGCAGAGCTTCAGCTTGCCTCCTCGAGC---TGCCACCCCTCCATACTCCTGGCAGGCTGAGCTTCATCCGCATtctcctcccctcctcctcttcctctccccacccttacttgggagtcccctgaacctccactgctcaccccccc-actctctgcccactcccccactcccctgcattcctttcttttcctcccaaccccccttcccttcTGAGGCCCTGCCACTGCAGTGCACGTGGA-CCGGCCCCTTCTTCCCCCTCCCCCCATCTGCCCCTTCCCTGAATTTCCTGTCCCCAGGCTTCTTCCCCTGCCACTCCTCACAGGTCCTTTCTAAGACTTCCCCCCTCCAGACCAGGGAGGGGGTCATGGGAGGCAGCCCTGGCCCTCCAGATGGACAGGGGTTCCAGGATG-GGGGAGCTGGTGGAAGATGTGCCCAGCTGAGGGGAGGGGAAAGCCTGCCTCAGGTCAATGACTTTTAACCCACTCTCCCCCCCAGCTAGCCCCTTCCTGGGGGGGTGGGCACCAAGGACCTAGCTTGTGTGGATCTTTAGTGTCCTTTTACCACTGAGGTTTTACTGACCCCCTCAGCCATGCCCTTCTGCTGACTGCCAGTCCCAGTCATGGGCCTAAGGCCTCCCACCCCATCCCCTTCGGGGGGCTCCGGCTCGGGTTCTTTACCCCCTCCTTCCCGCCGCCAGCCTCTCAGCCGACGCTGCTCTTCCTGCTGCTTTCCGGGGGGTAGGTGAGGCTGGAGCTGAGGGGTAGAGGGAGGTGGGCGAATGGGTTGGGGTCAGTGGTGGTCACCTGGGCTGACAGCGACCCCTG-----------CCAACCTCCCTTCTGGCTCTTTGCCCCCCTCCAGAATACCACTTGGGTCGCTCGAGGAGGAAGAGCGTCCCAGGGGGGAAGCAGTACAGCATGGAGGCCGCCCCCGCTGCGCCCTTCCGGCCCTCGGTGAGTGAAGGCGCTTGCCAGATGTGGCCCAGCTGCGCCCCCTCCCCTCCAGCCCCAGCTGGAGCCC-AGCGTTCTAAGAAAGGGGGCTGCAGGGAGAGAGAGTGAG----------------AGTGCGCGC--ACTTGCCTCTTCCCATCTCTTTGGTTTCCCCCTCCTTGGCTCTGTCCCCCTGCTTTTCAGACCAGCCCTCCCACCTTCTCCAGGCTG-----------gtgtgtgtgtgtgtgtgtg a score=89636 s hg19.chr6_ssto_hap7 4880574 1945 + 4928567 ATCCCCCTTTCCTCGCCTCTGGAGACTTCCCTTTTCCCCATCCCACTTTCATCCAGGGGCTCTCTACCAGCTGAGGGATGAGTAGGTAGAACTGACCCTGCCCCAACCCACCCC-ATCCCCATTTCCCCCCCA-----GCAAGGCTTCCTGAGCCGACGGCTAAAAAGCTCCATCAAACGAACGAAGTCACAACCCAAACTTGACCGGACCAGCAGCTTTCGCCAGATCCTGCCTCGCTTCCGAAGTGCTGACCATGACCGGTACAGGGGCTGGAGCATGTG-GGATGAGATTGATGTAATGTAGGGTCTCCTGTGTGAGATGCAGAGGGAGGGGGTTATCTGTGTGCAAAGGTTGAAGGATTCAACTCAAGTTGGTTGGGGGATGTCATGGCACAGGGGACAGAACAGAAAAGAACTAGAATAGGGATCTGTGAGCAGCAGGAGAGGGGTAGGGTGGCAGAGAGAAGACAGACAGACAGGCTGGAAAGGGAATGAAGGTGAAGCCAAGGagggactcctcagggactcctcaggCCA-AGAAGGATGGGCTCTAGCCCAGGATCAAAGGAGCTGTAC-------AGGAGGAGAGTGACCCTGGAGGAATGTTTAAGGAATGCAGGGAAGGGG--------TTGGTAGGTGAGTGAGCAATAGGCTGTAGGTGGAAGGGTGTCAGGGAAGGTCAGGAAATACAGGGGCAGCAGGTTGGAGTGGGGCTGGGGGTGGCTGAATGAATGGATGATGGCTAGGGCTCAAGGACCTCATCAGTGAGGGAAGAGACAGTATAGAGCATGGCAGAGAAGGGGAGGGTGGGACAGGTGTGCAGGGTGACAGAATGG------GAAGCA--------ACCCATGGACTGAGGCATGAAGAAGCAGCCAGCGGAGAAGTC-------------CAGAAGGCACTGTCCCTGAGACC-AGGC------TGAAGGAGACCTCCACTGTTTGCCTTTGTTGCCTGCCATTTGGGGTTCCTCTCTGGGTTTCCCCCTCACCCAGTCACTCCCCAGGGAGAACCATGCCCTCCCTTT-CCCCCATGTCTGGCCACCCCCAGGATTGGGCAGGTAGGGAGGTTGGGATAAAGTGAGTCACACCTTTCCCTGCCCCCCTCCCATGTTGCCAGAGCTGGATTTGGGGCCGGCAGGGGG-------------TGAGGGCATGGTATTCCTggccgcgggggcgggggggggggtccgggggccgggggAGCGTCGCGCTGACGGCAGCCAGAGCCTGCGATGACGGGGCTGCTATAAATAACTTCTTGGAGGCTCCCACACCCAAGCTCCCC-TCCCGCTTTCCCACTGCTCTCTACTCTTCATCCCCTGCCCATCTCCATACCGCTTTTGTATTGCTATCCTACCCCTCATTATT-------CCATG--------CCCCTAGCCCCCTTTATCTTCTGCCCTCCTGCAGTGATTTTTTTGCATTCCATCCCCTCTTAGCCCTCACCTCGGTTCTCCCGGCCATCTCTCCAGTTGGCCTTCCTCCTCTTCTCCTGTCCTCTGTCTTGCTGCACATACCTTTGTCTCCCCCTTTCTTCTTCTTGCCCTACCTCCTCTTCTTCCCTAGTCCCTGTATTCTGTCTTTTATCCTCTTTGAGCTCTTTTCTGCCCACAGCTTTCTCCTATTTCTTATGCTTTTCCCTCACTCTTTCCCCTGCTTCTGCTAAAACTTGTCCTCTTATGCTGTGTTCATTCattcttt---gaatcattaaatgtttatcaggcactagccgtgtgccaggcccaggctagacATATCTCTTCTCTGTGCCTTCACTTCTTTACTTCCACTTTTT--CCTTTATACTGAGGCTCTGGTTTCTGGGGTTACCTGGAGGTACTACCTAGAAGTGCCCCAGGCCCACTTTGTTCTCTCCTTTTTTTTTTTTCTTTTCTGCCATGGTCCATTTCTGGGTTGAGATATTTCTAGATGTCCCCAGTCCTCGCAATCCCTTAGGTGTGAGATGGTGGGAG s canFam2.chr12 5847021 1866 + 75515492 ATCTCCGTTTCCTCACCTCTAGAGACTCCCCTTCTTTCCCTCCCACTTTCATCCAGGGACTCTTTACCAGCTGAGGGGGGAGTACGTAGAACTGACCTTTCCCCAACCCACCCCTATCCCCATTTCACCCCCACCCCAGCAAGGCTTCCTGAGCCGGAGGTTAAAAAGCTCCATCAAACGCACGAAGTCACAACCCAAACTTGACCGGACCAGCAGCTTTCGCCAGATCCTGCCTCGCTTCCGAAGTGCTGACCATGACAGGTACAGGGATTAGAGCCGGGGTGGATGAGTTGGATACAGTACAGGGGCTCTTGGGTGAGACTGGAGGGCAGGGGCTTGTCCGGGCTCAGAGAGCAAAGGC-----CTCAGATTGGATGAGGGATGTTTTGGGGCAGGAGACAGAATGGAGAAGA----------------GGCAGTAGCAGGAGAGGGGCAGGGTG-CAGGGAGAGGACAAGCAGAGAGGCAGGATGGGGAATGAAGGTGAGGCCAAGGAGGGCCTCTTC----------CAGACAACAGAAGGATGGGTTCCAGCCCAGGATTCAGGGAGCTCTACTGGACAGAGAAGTAGTGGAGCCCAGGAGGAACATTGAAGGGATCCAGAGAAGGGGGCAGTGGGTTGATAGGAGAGGGAGCACTGTGAGCTAGGGAGCAGGGTGTGAGGGAATG---------------GCAGCAGGTTGAAGTGGGGATGAGGCTGGCAG-------------------GTGCTAATGGA-----------------------------------GGAGGGAAGGGGAGGCTGGCACAAGTGTACAGGTTGATAGAATGGCCAGGGGAAGCTCTAGGGTTAATCACAGACTAGAGAATGAGGAAGAAGCCCTCAGAGAATTCGGGAGGGTACTGTCAGAGAGTACTGTCTCCAAGGCCTAGGCCAGCGGTGCAGGAGATCTGATAT---TGCTTCTGTTGTCTGCTTCTTGGG--TCCTCTTTGGGTTTCTCCCTCACCCAGTCACTCCCCAGGGAGAACCCTGTCCTTCCTTTTCCCCCATGTCTGCCCGCCCCCAGGATTGGGCAGGTAGGAAGGTTGGGATAG-GTGAGTCACACCTTCCCCTACCCCCCTCCCATGTCACCAGAGCTGGATTTGAGCCTGGTGGGGGGGGGGGGTGTGGGGTGAAGGCATGGTATTCCTGGCCCCCGGGGCCGGGGTGGGGGGTGGGGGGCTGGGGGAGCGTCTCGCTGACGGCAAA-GGAGCCCAAGATGACGGGGCTGCTATAAATAGCTTCATGGAGGCTCCCACACCCGAGCTCCCCCTCCCGCTTTCCCACTGCTCTCCACTCTTCCTCCCCTAGCCATCTCCCAGCCGCTC-------ACTATCCCATCCCTCTGTATTGTGTGGCCCATGTCCTCCGTCCCTCAGCCCTCTGTACCTTCTGCTGTGGGGGGGAGG-------GCAGTTTCTGCCC------CCCCCACCCCCGTTCCCATGCCCATCTTtccacctgctcctcctcatcttctcccatccc--gtctttctgcacgtggctttgcctccacctg-ctccctcctgccctacctcctcctcttccccaggccccatttcctagttctt--ccttct----cacttctcTGCCCATAGCTTTCTCCTATTTCTTGTAACTTACTTTCCCTCTTTCTGCTGATTTTGCTCAACCTTGTCCTCTT----------CATGCATTCTTTTTGGAATCACTAAATGTTTCTTAGATGCTAGCTGTGTGCCAGGCCCAAA-GAGACAT----CTTCTTTGTACTTCTGGTTCTTGAGTTCCACTTTTTTTCCTTTATATTGAGACTCTGGTTTCAG-------CTAGAAGTCCTACCTGGAAGTGTCCCAGGCTCAC------CTGTTCTTTTTTTTTTTTTTTTTGTCTCATGGATCATTTTGGGGTTGAGATATTTCCAGGTGTCCCCAGTACCC------CCTCAGGTGTGAATTGGGGGTAG a score=6543 s hg19.chr6_ssto_hap7 4882674 165 + 4928567 GAGTTCCTTAAAGGATTCTGATTTTTCTCACATCCCTCACGTCCTTCCT----GATAGGCAGGGTTTCTTT----CTGTGTCT--GTTTGGGAAGGGTGTTCAGGGGGCCTTCTCTCCAAGTCTCCATCCTGGAACAGACTGATGATGCAGGGTACCTATGTGTCTAAGAAGAGT s canFam2.chr12 5848887 161 + 75515492 GGGTCTCTTAAAGCATCCTGACTTCTCTCACTTTCCTCCTGTCCTTCCTTAAGGATAGGCCAATGTTCTTTTCATCTGTGTCCCCGTGGGGGAAGGGGATTCACGGGGCTCTTTCCCCAGGTCTCCATCCTAGAGCTGGCC--------------CCTGAGTGTGTAAGAAGAGT a score=42531 s hg19.chr6_ssto_hap7 4883132 821 + 4928567 GAAGCCCTGATCCCTTCCTCTCCTGAACCTCCTGCCTGCCAGGGCCCGGCTGATGCAAAGCTTTAAGGAGTCACACTCTCATGAGTCCTTGCTGAGTCCTAGCAGTGCAGCTGAGGCATTGGAGCTCAACTTGGATGAAGATTCCATTATCAAGCCAGTGCACAGCTCCATCCTGGGCCAGGAGTTCTGTTTTGAGGTACTGGGTCTGGTGGGCTGGGGAGGGCCAAAGGACAGGGGTGATGGAAGGTGGGGGGCAGAGAGGTCTAGAGAAAGTGGCACAGGTGGGGACATCAAGGAAACAGAAA-CTTCTGGGACTGGAGGAAAGG---GTAGGCCAGGGAGG--AAGAGAAGGTAGCAG---------------------AGTCTCCTCCCCTCTGTAGCCCTTTCCCTCAACTCCACACTCCTTTCTAGGTAACAACTTCATCAGGAACAAAATGCTTTGCCTGTCGGTCTGCGGCCGAAAGAGACAAATGGATTGAGAATCTGCAGCGGGCAGTAAAGCCCAACAAGGTATTGGGGAATAAAGGGGACA----CAACCTGTGTAGGGCAAAGGTTGCACCAACACGGGAAGCTGGGGGCCTAGGGAGGAAAGTGAGTTAAAGG-AGGAGAGGCTTGGGGAAGGAGAGGATTGAGGTACAGTGTATCTGGACAAGCAGGGGGAGACCCCCATTATTCTGAGTCCCCCATTTCTTTTCGCTTTCTGTACTGCTACCCTGCCTTACGATCTCTTTCCCTGCCatagaagtcatagacttacagagttgatggggctctggaaattctttagtctagcttccctgcaggcaggaatgcttcactaataccccG s canFam2.chr12 5849048 788 + 75515492 GAGGCCCTGACCCTGTG---GCCTGACCCTTC--CCCGCCAGGGCCCGGCTGATGCAGAGCTTCAAGGAGTCACACTCGCATGAGTCCTTGCTGAGCCCTAGCAGTGCGGCCGAGGCCTTGGAGCTCAACTTGGATGAAGATTCCATTATCAAGCCAGTGCATAGCTCTATCCTGGGCCAGGAATTCTGTTTTGAGGTACTGGGTCTAGTGGGCTGGGGAGGGC--------AGGAGTGATGGAGGATGAGGG-CACAGAGACCTGGAGAAAGTGGCACAGGTGGGGATGATGAGGAAATAGAAAACCTCTAGGCCTGGGAGAGAGGAGGGTAGGCCAGGGAGGGGAAGACATGGTGATGGGGGGTGTCTCAGGTGCTTAGGAGTCACCTCCCCTCCAGAGCCCCATC--TCAACCCC-CACCTCTCTCTAGGTAACAACGTCTTCAGGAACAAAATGTTTTGCCTGTCGTTCTGCGGCCGAAAGGGACAAATGGATCGAGAATCTACAGCGGGCAGTAAAACCCAACAAGGTATCGGG-AGTAAAGGAGACAAAGACAGCATGGGCAAGGCAAAGGTCAAGCCA-CAGGGGAAGCTGGGGGCCTAGGGGGCAAGGTGAGCCAAAGGGAAGGGAGGCCTGGGGAGGAGGGG----------------ACCTGGATGACCAGGAGGTGACCCCCACTTTTCTGAACTGCCCACTTCCTTTACCATTTTTT--------TCTGCCTCATGGTCTGTTTCTCTACTGTAGAAGTCACAGACCTAGAGTGTTGAT----------------------CTGTCTTCTATGTAGGCAGCGGTGCCCCACCAGCACCCTG a score=12981 s hg19.chr6_ssto_hap7 4883970 371 + 4928567 acttagccaagtttctgtaccttggtttcctctctaagacagagggaactggtggcaatgggttg-------------------------gattaaatgatctctaaggtccctttggcacataaattctatgagtctg--ttcttcccaaaacttc---------------atgcttccagttctgtcagctattctctgtatcccagtttctagcaagcttacagtcctagtcacactcctctggggggaactcttgtgtcttgatgtccttaaagaactcaacccaagatgctg-acatgatctgacctatgcagagtacaaacaccatgttccctttcaacacactgcaatatcacctgagccttaccattagcttgtgctcaattgtatccccccaggcccttactgat s canFam2.chr12 5849892 391 + 75515492 AGTTAGCCAAGCTTCCAGACCTTAATTTCCTCTCCATAA-------AGCTGGTGGGAATGGGGTGTATGTGGGAATTGGGTTTATGTGGgaattagatgatctctaaagtccctctggctcagaaattct--gagtctGCATtcttcccaaggcttctatttcctaggagaaatgcttccggttccaccagctcttct-tggatcccagggtacagtaagctcacagccctggtgacccttctctgggggatgc-cttgtttttcgttgtct----ataactagacccaagaggctggatgctgtttgacccatgcagagtcggaacacc-tgctctctt----cactcagcagcatc--ctgagcttcaccaggaccttgtggtccactgtatgcccc-aagcccttgcacac a score=16902 s hg19.chr6_ssto_hap7 4884643 534 + 4928567 gctttacccattctatat----gcaattc---------ttttttca--caatttctgatagtctctgc--aggactttccagttcc---cttcaaattctacattaatatttttggcttgttattccagcttttgaaatctttcc-aatactgtttgtgttgtctagtgtatG-TCTACGCTTCTACAGtagcttcctggggctgctataacaaactgctacaaactgggtcacgtaaaacaacagaaatttattctctcacagttcaggaggctggaagtccaaaagcaaggtatcagcagggccacgctctctttgatgctgtagcagggaatccttccttgcctcttcctagcttccggaggttgccag-----------cagtccttggc--------attcctgggcttataactgcatccgtctaatttctgcctccatcttcatgtagctggcttccttctgtgtgtctctgtatcctgtatctctgtgtctccaaatctccctctccatataaagacaccagtttttataagg---tgggttaagggtccactctaattcagtatggcct s canFam2.chr12 5850297 517 + 75515492 gcctcacccatcctgtatttttacaactcgcttttttgtttttgcaatcaatctctggttgtctttggggaggaccccccaattctgctctttaaattccaccttattacctttggtttattcttctagcttttgaaatttttcccagtgccgattctattgtctgatgtatgagctac-cATCtatattagttttctagggctgctgtaacaaattactataaacaagatcacttacaatgaaagaattttattcttccaagatttagaagaccaaaagtcccaaatcaatgtgttggcagaaccttgctccctctgaagctctaggaag-aatccttccctgcctctt------ttttgggggttttttgggtcatttttttcttccttgcctcttgatagctccttgacttatagctgcatgggtccaatttctgcctc-------------------------tgtgtgtgtccg----------------gtgtctaaatctccctctgcatataga------------tatgaggcattggatttagggcccactctaatccagaatgaaca a score=134976 s hg19.chr6_ssto_hap7 4885473 2108 + 4928567 tcttcttagtttgattacatttgcagggatcctgtttccaaataagatcacattcacaggttcagggtagacatgagttttgg----tgggatactattcaacccaGTACAC--CGTCTCA-CCTTATGATTGCTGTCTG--------TATCCCACTTTCTTACTGTCTCTCCTCTTTTGGTGTCTCT-----CTGTCCCTTCCCCCTTTAACATCATGCCCACCCCACCATGCCAGGACAACAGCCGCCGGGTAGACAATGTGCTAAAGCTGTGGATCATAGAGGCCCGGGAGCTGCCCCCCAAGAAGCGGTACTACTGTGAGCTCTGCCTGGATGACATGCTGTATGCACGCACCACCTCCAAGCCCCGCTCTGCCTCTGGGGACACCGTCTTCTGGGGCGAGCACTTCGAGTTTAACAACCTGCCGGCTGTCCGTGCCCTGCGGCTGCATCTGTACCGTGACTCAGACAAAAAGCGCAAGAAGGACAAGGCAGGCTATGTCGGCCTGGTGACTGTGCCAGTGGCCACCCTGGCTGGGCGCCACTTCACAGAGCAGTGGTACCCTGTAACCCTGCCAACAGGCAGTGGGGGATCTGGGGGCAT---GGGTTCGGGAGGGGGAGGGGGCTCGGGGGGTGGCTCAGGGGGCAAGGGCAAAGGAGGTTGCCCGGCTGTGCGGCTGAAAGCACGTTACCAGACAATGAGCATCTTGCCCATGGAGCTATATAAAGAGTTTGCAGAGTATGTCACCAACCATTATCGGATGCTGTGTGCAGTCTTGGAGCCCGCCCTGAATGTCAAAGGCAAGGAGGAGGTTGCCAGTGCACTAGTTCACATCCTGCAGAGTACAGGCAAGGCCAAGGTGAGTGTTGTGCCCTCAGGGAAAGGTGACTTGGGAATGGGCACTTGCTTGGG---------GGTTAGTGAGGACAGGGCAAATTC---------ACGAGATTGGGTTGTGCAGAGGCTGACACTTGGATTTTCCTGGGCCTCAGGACTTCCTTTCAGACATGGCCATGTCTGAGGTAGACCGGTTCATGGAACGGGAGCACCTCATATTCCGCGAGAACACGCTTGCCACTAAAGCCATAGAAGAGTATATGAGACTGATTGGTCAGAAATACCTCAAGGATGCCATTGGTATGGCCCACACTCAGGCCCTCTTCTTCCCAAACCTGCCAGATGT---------------------CCACCCCAGACCCCAAGTCCACCCTTCCACAGCTTGATACTTCCTAACCCAGAGTCCTAGGACTCCAGCCTCCAACACCTGATTCTGAAATTTCCCCAACCCTGGCCACCCCCTTCCCTGCCCTTGGAAAGTGTGACCACACCCTCTTGTGCCCCCACCCCCCAGGAGAATTCATCCGTGCTCTGTATGAATCTGAGGAAAACTGCGAGGTAGACCCTATCAAGTGCACAGCATCCAGTTTGGCAGAGCACCAGGCCAACCTGCGAATGTGCTGTGAGTTGGCCCTGTGCAAGGTGGTCAACTCCCACTGGTGAGACTGGGAACGCTGGGCTGGGGGGCCAGGGTCGGGGGAATTATGTGTTCATCTGTTCATCTATCTGTCCATCCTCAAAGAGGactgagcaccatttatgggcaaagcattgttctaggcgctatagagcaaac--aggtgaaagaggcctggtccctgccctcagagggcctccaccagaatggggacaaattagaagaaaaaaaaaaaaagccacagagccataatggtgtg---taagtgctGAGTAAGGGTCCCCCCAACCTCTGTGTGACATAAGGTCAGAGAGAAGGCAGAGCT----TTGAGATAAGTGGGGAA------------GAGGTGCCCCCTTGGG-TAGGCTTTGAAGACTGGTTTAGGTTCTGATATATGGACATAGTTGGCAAGAAAGACATTTCAGAAGAAGGCTGTGAGAAAGGCACATGTGTGATGGTGAAAAGGCCCAGGAGTTTTCAGGGGACATTAAAGTAGGTTAGTAGCAATTACATCAGGTTTAGTGGAGCATGTGCCTCATAATGGGGAGTGGCGGGAGAGATGTCTGGGCAGGAAGATTAGCTTTAGAAACTGGAAGGCCTC------------AAGGAGTCTGAGGTCATTGGTAGGCCTTGGGATGCCATTAAAGGTGTC-------AGAAATATTGTGATTTAGAAG s canFam2.chr12 5850814 2172 + 75515492 catt-ttaacatgagtagatcagcaaggacccttttgtcagtgaaggtcacattcataggttccgagtggacatgaattttggagaagggtacactattctacGCGGTACACATCTTCTCAGCCTTATGATTGCTGTCTTAGAGGCTCTGTCTCGTTTTCCAACTGTCTCTCCTCTTCTGGTGTCTCTGTCTCCTCTCCCTTCCCCTTTACCTGCCATTCCCACCCCACCACCCCAGGACAACAGCCGCCGGGTGGACAACGTGTTGAAGCTGTGGATCATAGAGGCTCGGGAGCTGCCCCCCAAGAAGCGGTACTACTGCGAGCTCTGCCTGGATGACATGCTGTATGCACGCACCACCTCCAAGCCCCGCTCAGCCTCAGGGGACACCGTCTTCTGGGGCGAGCACTTCGAGTTTAACAACCTGCCGGCTGTCCGTGCCCTGCGGCTACATCTGTACCGTGACTCAGATAAAAAGCGCAAGAAGGACAAGGCGGGCTATGTTGGCCTGGTGACTGTGCCCGTGGCCACTCTAGCTGGGCGCCACTTCACAGAGCAGTGGTACCCCGTCACCCTACCGACAGGCAGCGGGGGCTCTGGGGGTATGGGGGGCTCAGGAGGGGGTGGGGGCTCGGGAAGCGGCTCAGGGGGCAAGGGCAAAGGAGGCTGCCCAGCTGTGCGGCTGAAAGCGCGTTACCAGACGATGAGTATCCTGCCCATGGAGCTGTATAAGGAGTTTGCAGAGTATGTCACCAACCATTATCGGATGCTATGCGCAGTCCTGGAGCCCGCCCTGAATGTCAAGGGCAAGGAGGAGGTTGCCAGTGCACTGGTTCATATTCTTCAGAGTACGGGCAAGGCCAAGGTGAGTGCTGTGCCCTTAGGAATAGGTGGCCTGGGAGTGGGCACTTGCTTGGGGCAGGGGATGGATAGTAGGGATAGGGCACTTCTGTCTTCAGAATGAGCTTAGGTTATACAGAGGCTGATCCTTGGATTTTTCCGGGCCTCAGGACTTCCTTTCAGACATGGCCATGTCTGAGGTGGACCGGTTCATGGAACGGGAGCACCTCATATTCCGCGAGAACACACTCGCCACTAAAGCCATAGAAGAGTACATGAGACTGATTGGTCAGAAATACCTCAAGGATGCCATTGGTATGGCCCACTCTCAGG---TCTTCTTCCCAAACCTACCAGATGCACATCCCAACCCTAAACTTGGCTACTCCAGACCCCAAGT-CACCCTTCCTCAGCTTGATGCTTCTAAGCCTAGAGTCCCCGGACTCCAGCCTCCAACCTTGGGATCCTGGGATTCCCCAACCCAGGCAGCCCCCATCCCTGCCCTTGACAAGTGTGACCACCCTCTGTTGTGTCCCC-CACCCCAGGGGAATTCATCCGTGCTCTGTATGAGTCCGAGGAGAATTGTGAGGTGGACCCCATCAAGTGCACAGCGTCCAGCCTGGCAGAGCACCAGGCCAACCTGCGGATGTGCTGTGAGTTGGCCCTGTGCAAGGTGGTCAACTCTCACTGGTGAGACTGGGAACGCTGGGT--GGGGGCTGGGGCCCGGG---TCATGTGTTCATCTGTTCATTCATCTGTCCATCCGCAAAAAGGACTGAGTACTGGTCATGGGCAAAGCGGTGTGCTGGGGGCTGTAGAGCAGACAGAGAGGAATGAGGCCTGGCCCCTTCCCTTAGAGGGCCTCGCCCAGAATGGATA-GGGTCAGAGTGGATACACAGAAAGCCACAGAA-CACTTTAGTGTGTGTTAAGCACCAAGTGAGGGTTCCCCCAG-------GCAACATAAGATc--agaggaggccaagctttgattgagataaacagggaaggcttcacggaggagatgttccccggggctgggctttgaagactgggtggggttctgataagtggatatggtggacaaagaagccattttaggagaaagctatgggatgggcatgtgtgtgaaggt-aaggggcctgggagctttcggggggc---------------cagcagttagctcaggtttaatggagcatgtagctcataatggagagtgcaggagaagaggtccggacagggggttgaac-ttagaatctggaagttctcagctgccaggctaaggagatggagttcatcggtaggtcatggaatgccattagtggtgcttgtgccaagaagtatcatgattgagaag a score=172203 s hg19.chr6_ssto_hap7 4887910 2892 + 4928567 AGTAGAGTAGAGGGATGTATGTTGGGGGATGACTGGAATAGAGCCAGCTGGG----GGC---TCGGAGGCA-----TGAAAGTCAGATCCTGAATCAGAACAGTGACA--GAAGTTAGGAAGGAG-CTACTG-GAAGGACCCTCTCGGGAAAGGATCAGTAGGAATTGTCAGCTTATTGGAAAGGAGGGAGCATGTCTGTggggagtcacggatgactcaagaggccatgaggctggtggttgggagaccggtggcctcattgac--aaccaggaaagtcaggaggaggagccagttggaggtgtgggggcgatggtgagctctgctttacacca------gccgagtttaaggtgtcagtgggacattgaagtggaactgGGAGGTGCGGGGAGTGAGCTCTGAGCCATTCCAGGGACTGGGGATCATGCCTGGGGCACCTCCATCCCCATTTCCCTGGAATCCAGAAGAGTTGGGGGGTCCGAGCTCCCTGTACCTCAAGTGAccctccatctctctcccatctctgtctctccctggtgtctgtttttcttctcctcctctccttgtctctctcccacacccctccatctctctcc--cacgtgtctctcccctcaccttctctccccctccatttctctctccctAATCTGTCTGTTCCCTCTGCCATGGCCCCCTTCTTCAAGCAGCCTCCCATCTTGCTCCTGCGGTCCCTCCTTCCCTGTCTCTCTCAC-CCCTGTTTCCACACCCTCACCTCCTACCACCCCCCTCAGCATGTTCCCTGGAAGCTGAGGGTCTCTGGGGCTCAGTCCCGGtctctctctttctctctctctctctctgtctcCCCGACCCTTCCCCCCAGCGTGTTCCCGAGGGAGCTGAAGGAGGTGTTTGCTTCATGGCGGCTGCGCTGCGCAGAGCGAGGCCGGGAGGACATCGCAGACAGGCTTATCAGCGCCTCACTCTTCCTGCGCTTCCTCTGCCCAGCGATTATGTCGCCCAGTCTCTTTGGGCTTATGCAGGAGTACCCAGATGAGCAGACCTCACGAACCCTCACCCTCATTGCCAAGGTCATCCAGAACCTGGCCAACTTTTCCAAGTGAGGGAAGCTTCAGGAGTgggcagggcagggagtggcagggcagggagtggcagggctgggGGTCGGCAAGAAGGGTCTCCTGAGTCCCCAGAGATCCTGAGATGGGGAGGCTATGATACCTtgtgtgtgtgtgtatgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgACCTTTATCTTCTGCAT-TCTTGGCTAGGTTTACCTCAAAGGAGGACTTTCTGGGCTTCATGAATGAGTTTCTGGAGCTGGAATGGGGTTCCATGCAGCAGTTTTTGTATGAGATCTCCAATCTGGACACGCTAACCAACAGCAGTAGCTTTGAGGGTTACATCGACTTGGGCCGAGAGCTCTCCACACTGCATGCCCTACTCTGGGAGGTGCTGCCCCAGCTCAGCAAGGTCAGCAGATCCCCTCTTTGCCCTATCCCCAGATGGCTCCAGAGGTTCCTGGAGCCTGAGAAACTACCCTTTGAAGA-TTTTTTTTCTCCCCTTGTTTCTCGAG--GTGTCACCACTACTATCCCAACTCAGGCCCCCTCCACCTGCACCCTCAGAGGCCCTCTTAGAGCTGGGCACTGAGCCCCCAGGTAACAGCCTCACCCTTCCAGGAAGCCCTCCTGAAGCTGGGTCCACTGCCCCGGCTCCTCAACGACATCAGCACAGCTCTGAGGAACCCCAACATCCAAAGGCAGCCAAGCCGCCAGAGTGAGCGGCCCCGGCCTCAGCCTGTGGTACTGCGGGGGCCATCGGCTGAGATGCAGGGCTACATGATGCGGGACCTCAACAGGTGAGCACCCTGGGACAGCCAGGCCTGTGCCCTAGGAGCCC---TTCTCCTATTCTAGATACTCCTCACTGGGCCCCACATGCATCTCTCTAGGGCTTGAAAGAAGGGAGGAAAAAGCACCAAGTTCTCAGGGGAGACGATAAGGAGACAGGTACAGTCAGTGG-TAGGCTGAGAGCCCTTTACAGCCTGAGGGAGTGAGAGATTTGGAGCTCTAGGAATAGGGCTGAGGCTCCACCAACTCACGGCTTAGTTGTAAGCCTAGAGCATCCCTGCTGCAAGCTCTGATTTGCTGTCCCTCTGCCTGCCCATGCTAGTCCCCAggctgaggttcagccag-catgtcatgtcagccatgtgt---caaaatgttcaaacatctcagtaatagctagtgaataagcacttcccccagcccccgaccacaaccccacagacctccccatgatccagcacttagagcagtgacagcagaagcctagcagggcctgcagcctgctccagagtcccagcctccattctgataggtggtgcccgtgcttcatttgctgctcattattttgaTGATGGCCCTGCTTTTTCCTCTGCCCGTGTCTTCCTCCATGACACCATACCCATCCCACCATTCCCGCCTCTCCTTTCATTTGTCCACATCTC-------TCTCCTTCTCTGTCTGTGCTCGCCCCTCTTTCCATCTCTCTCCAGCTCCATCGACCTTCAGTCCTTCATGGCTCGAGGCCTCAACAGGTGAGGGGctctcccct-cccccgccctcctctcctctcctgtctgttccctctcccactccactggccttcgccctactcctctcctctcctcCTCCATGGA-CCTCATCTCCTCCATATGTGCCCAGCCCTGCCCC-CATCCCTTCTCTTGCTGCCCCCATCTCCCCTCCTCTAGGCCTCACCCCCTTCCCGGAGGGGCCCTGTCCTTTCCCTTTACTCACCTGTCCCCTCCCATCCTCCCTGCCTGCCCTCTTCAGGGCTGCCACCGCTAGCTCTCAGCCCTTCC s canFam2.chr12 5852986 2797 + 75515492 agtggtgtggagcg--------tggggcatgactggagtagagggagcaaagtccaggctatttggaggtaatggttgatggatgaggtgtggatcaggacggagacagggaagggagaaaggggcccactgtgaaggcctctctgaggaaaggatcagctggagctgtcaactgcctgggaagaagggagcttgtctgtggggagtcagggatgactcaagaggccaggaggctggtgttt--gagacctgtggcctcattggcagaactggggaagtcaggaggaggagcca-------gtgtgggggcgatggtgagctctgctttacactaccggagtcagagtttaaggtgtcagtgggacactcaagtggaACAGGGAGGTG-GGGGAGTGAGCTCTGAGCCACTGCAGGGAGTGGGGGTCACGCA-GGGGCACCTCCATCCCCATTGCCCTGGAATCCAGAAGAGTTGGGGGGTCCGAGCTCCCTGTACCTCAAGTGAccctccatctctctcccatctctgtctctccctggtgtctgtttttcttctcctcctctccttgtctctctcataca-tcctccgtctctcccctgcatgtctctctcccctcaccttctctccccctccatttctctctccctGATCTGTCTGTTCCCTCTGCCATAGGCCTCTTCTTCCAGTAGCCTCCCGTCTTCCTGCTGCAGACCCCCCCTCCCTGTCTCTCCCCCACTCTGTTTCCACACCCTCACCTCCTACCACCCCCCTCAGCATGTTCCCTGGAAGCTGAGGGTCTCTGGGGCTCAGTCCTGGtctctctctttctttctctctctctctgtctccccctccctTCCCCTCAGCGTGTTCCCGAGGGAGCTGAAGGAGGTGTTTGCATCTTGGCGACTGCGCTGCGCAGAGCGGGGCCGGGAGGACATCGCTGACAGGCTAATCAGCGCCTCGCTCTTCTTGCGCTTCCTCTGCCCAGCCATTATGTCGCCCAGTCTCTTTGGGCTTATGCAGGAGTACCCAGATGAGCAGACCTCACGAACCCTAACCCTCATCGCCAAGGTCATCCAAAACCTGGCCAACTTTTCAAAGTGAGGGAAGCCTCAGGTGGGGGTAGGGTGGGGA-------------------------TGGAGGT-GGCAGGAAGGGTCTCCCAAGTCCCCAGAGACCCTGAGACAGGCGGG-TGTGAGGCC-----------------------------------TGTGCGCGCGCGTGTGCGTAACACCTCTACCTTCTGGATGCCTTGGCCAGGTTTACCTCAAAAGAGGACTTTCTGGGCTTCATGAATGAGTTTCTGGAGCTGGAGTGGGGTTCCATGCAGCAGTTCCTGTACGAGATCTCCAACCTAGACACGCTAACTAACAGCAGTAGCTTTGAAGGTTACATCGACTTGGGCCGAGAGCTCTCCACACTCCACGCCCTACTCTGGGAGGTGCTGCCCCAGCTCAGTAAGGTCAGCAGATGCCC-CCCTGCCCCTTCCCCAGATGTCTCCAGAGGCTCCCATGGCCTGAGAGACCACTCCCTGCACAGTGCTTTCTCTCCTCCCTGTCCCCAAAATGTGTCTCCACTGCTCCCCCAGCTTGGACACCCTTCCTCCACTCCCTCTGGCGCTCTCTTCGAGCTGGGCGCTCAGCCCTCAGGTAACAGCCTCACCCTTCCAGGAAGCCCTCCTGAAGCTGGGCCCACTGCCCCGGCTCCTCAACGACATCAGCACAGCTCTGAGGAACCCCAACATCCAAAGGCAGCCAAGTCGTCAGAGTGAGCGGCCTCGGCCCCAGCCTGTGGTGCTGCGGGGCCCATCAGCAGAGATGCAGGGCTACATGATGCGGGACCTCAACAGGTGAGTACCTGGGGCTCCCCGCACCTGTGCCCTAAGGGCCTCTACTTTTCTCTTCCGGATACGCTTCCCTGGGCCCC-CGTGCATCTCTCTAGGGCTTGA---GAGGAAGGAAAAAGAGGCAGGCTCTCAGAGAAAATGGTAAGGAGACAGGTAGAGTCAGCGGTTAGTCTGAGAGCCCATTAGGGCCAGAGAGAGCAAGAATCTCAGAGCCCCAGGAAGAGTGCGGAGGCTCCTCCGGCTC-CAGCTT-GCTATGAGCCTGGGGTTCCTCT------------------CAGTCCCTCTGCCT--CTGTGCCTGTCCCAGAGCTGAGGTTCAGCCAGCCACGTGGGGTCAGCCATGTGGTAACAAAACGTTGAACTAGTT--GTACTAGTTGGTAAATAAGCACTG-GCCCAGCCACCCACCAGAACTGAACAGGCCTC-----AATCCAGCAATT-GAGAAGTAGCATACACACCCTAGCAGGAC----------CTCCTAAGCCCCAACATCTGTTCCAAT--GCAGTG-----GCCTCAACTGCTGC---TTGTTCTGCTGACCGCCCCACTTGTTCCTCCAGCCTAGTCTCCCTCCACAATGCCATCCCCATTCCACCATTCCCACCTCTCCTTCCATGCGTCCACACCTTCCACCCACCTCCTTCTCTGTCTGTGCTTGCCCCTCTTCCCATCTCTCTCCAGCTCCATCGACCTTCAGTCCTTCATGGCTCGAGGCCTCAACAGGTGAGGGGctctcccctccccccggccccctctcctctcctgtctgctccccctccccctccagtggccttcact---ctcctctcctcttctcttcCATGCACCCTCATTTCCTCCATACTTGCCCAGACCCACCCCTCATCCCTCTTCTCGGTGCCCACACCTTCCCTCCTCAAGGCTTTGCTCCCTTCCCAGAGGGGCCTT-TCCTTCCTCCTT-CCCACGTGTCACCTCCCGTGCTCCCTTCCAGCCTTTTTTAAAGCTGCTACCAC-AGCTTTCCACCTTTCC a score=5786 s hg19.chr6_ssto_hap7 4890872 509 + 4928567 CCTTACCTTCTGCTTGTGTGCCCCCTTCCCTTCTGACAGCTCTATGGACATGGCTCGCCTCCCCTCCCCAACCAAGGAAAAGCCACCCCCACCACCGCCTGGTGGTGGTAAAGACCTGTTCTATGTAAGCCGTCCACCCCTGGCCCGTTCCTCACCAGCATACTGCACGAGCAGCTCGGACATCACAGAGCCAGAGCAGAAGATGCTGAGTGTCAACAAGAGTGTGTCCATGCTGGACTTACAGGGTG--------ATGGGCCTGGTGGCCGCCTCAACAGCAGCAGTGTTTCGAACCTGGCGGCCGTAGGGGACCTGCTGCACTCAAGCCAGGCCTCGCTGACAGCAGCCTTGGGGCTA---CGGCCTGCGCCTGCCGGACGCCTCTCCCAGGGGAGTGGCTCATCCATCACGGCGGCTGGCATGCGCCTCAGCCA-GATGGGTGTCACCACAGACGGTGTCCCTGCCCAG---CAACTGCGAATCCCCCTCTCCTTCCAGAACCCTCTCTTCCACATGGCTG s canFam2.chr9 335190 466 - 64418924 CCCTTCTTTCCCTGTGTGTGCTTGTCTCCCT----GCAGTCTGATAGATTTCACCCGGTTACCGTCTCCAACCCCCGAAAA---------------------------CAAGGACTTGTTTTTTGTCACAAGGTCCTCCGGGGTCCAGCCCTCACCTGCCCGCAGCTCGAGTTACTCAGAAGCCAACGAACCTGATCTTCAGATGGCCAATGGTGGCAAGAGCCTGTCTATGGTGGACCTCCAAGATGCCCGCACACTGGATGGGGAGGCAGGCTCCCCGGCA----------GGCCCCGATGCCCTCACTA---CTGATGGGCAGACGCCA-GCATCTCAGCTAGCGGCCGGGTGGCCAGCCCGGACAGCCCCAGC---AAGCCTGGC----GGGGCTGGC---GACAGTACGGCGGGCAGGCCAGACACCGACCACGCCGGG---CACCTCCGAGGGCGCCCCTGGCCGGCCCCAGCTGTTGGCGCCACTCTCCTTCCAGAACCCTGTGTACCAGATGGCGG a score=114783 s hg19.chr6_ssto_hap7 4891381 2279 + 4928567 CTGATGGGCCAGGTCCCCCAGGCGGCCATGGAGGGGGCGGTGGCCATGGCCCACCTTCCTCccatcaccaccaccaccaccatcaccaccaccGAGGTGGAGAGCCCCCTGGGGACACCTTTGCCCCATTCCATGGCTATAGCAAGAGTGAGGACCTCTCTTCCGGGGTCCCCAAGCCCCCTGCTGCCTCCATCCTTCATAGCCACAGCTACAGTGATGAGTTTGGACCCTCTGGCACTGACTTCACCCGTCGGCAGCTTTCACTCCAGGACAACCTGCAGCACATGCTGTCCCCTCCCCAGATCACCATTGGTCCCCAGAGGCCAGCCCCCTCAGGGCCTGGAGGTGGGAGC---GGTGGGGGCAGCGGTGGGGGTGGCGGGGGCCAGCCGCCTCCATTGCAGAGGGGCAAGTCTCAGCAGTTGACAGTCAGCGCAGCCCAGAAACCCCGGCCATCCAGCGGGAATCTATTGCAGTCCCCAGAGCCAAGTTATGGCCCCGCCCGTCCACGGCAACAGAGCCTCAGCAAGGAGGGCAGCATTGGGGGCAGCGGGGGCAGCGGTGGCGGAGGGGGTGGGGGGCTGAAGCCCTCCATCACCAAGCAGGTAGGTGAAGGCAGGAGGAAGGCGGGCTGGGTCAC-AACAGGGAGGGAAGAAGGAGATGG-------GGGGTGGGGTTGAAACAGAGTCTGTGGCCTGAAGTTACAATCTTCTTGCCTCCTTTTGGCcattaaacaaat-gtgtatagagggcctgctatgtgccatgtgctatgccaggcactaaggatacggcactgaaccctcttagcactctcattccagaggggattaatccataagtagaATGGGGGTGACTGGAATAGGGCCAGCTGGGGGCTTGGAGGCATGAAGATCAGATCCTGAATCAGAACAACAGGAGAAATTCTCTGGCATTCAACTCACATCTCTGGCATTCA-GAGGTGATAAAGGCTACAGCAGGGCAATAGGACTGGGACTGTCGTCTCCTTTGGCTGTGCTGTTGCCCTCTAAATGTACCCTGCTTTTTCCCACCTTTTCTTTCTCTGTTCGCCCTCACTGTGCCTTGTCCCAGCATTCTCAGACACCATCCACATTGAACCCCACAATGCCAGCCTCTGAGCGGACAGTGGCCTGGGTCTCCAACATGCCTCACCTGTCGGCTGACATCGAGAGTGCCCACATCGAGCGGGAAGAGTACAAGCTCAAGGAGTACTCAAAATCGATGGATGAGAGCCGGCTGGATAGGGTACGATGGGCTCTACCAGCTCCAAGCCCCAGTGTTTCCTTTTACCCACAGGGGAGATCTCTAGTCACTTCCAAGGGAAACCTCCAGGGTC-----AGTTATGGTGGTAAGAAAAGGCAAAGACCTGATCACCT--CTTGAGAAGCCTTCCGTCCATCTGGGGAGACCAGATACACACAGTTGTTAAAAGTCA-CTTTCAACTCTATTTTGTAGGTTATATATATCATAGACTATCTGGGGATCATCTATTTTAGG------------CTTACCTCCATGTTCTTCCCCAGGAGGAACATAAGCCCTGGCTCCTGTGACTGCTTAGGAAAGGAAATGTTA----CTTTACTGGCAGTAGGAGCTAATAAATTGGATGGGGATGGAGGGGGTTGCAGCTATATTACAAGTGATGTCTGGCCTACCCAGTCACTGTCCCATGGGCATAAGTGACAGTCAGTGGGCAGGGAATGCATGTGGTAAAGTAGTATGTATCAGTC-ATGTGTGAAAAGACCATCCAGACCCTCACTTGGTGGAGGCTGAGGGCAAAGGGCACCAAGAGCTCTGGGGCTAACACAGATAACTTAGCAGAAAGTTACTTGAGGAAGCTGTTGTTCCTAGGGC-CTGAGGAAGAGGGCGGCTGCAGGATTAGGTCATATATAAAGAACATATGATCCTAACACGGGGAAG------------------------TGGTCTTTGAGCATAGGAAA-TGTTGGGACTGACTCAGATGGGCTTGAC-CAGCAAATTTAATgaga--attaaaccctaatattagccccaaggcagccaccgtaggaagttaattcacatctctcctctgcatgtagaa--gggttggtgatatatgtatgtatcctcttcagagaatgaggaaatagtcttttgaatcatttttttttt-ctgtgcttcagatgaggaaaccttgttgagaaaggctgTAGACTagcactatccaatataactttctgcagtgatga--aatgttctgtaatctgtagtgttca------------------catgtgtctagttgtgattcaggaactgaatttttagatctatttaat s canFam2.chr12 5856413 2225 + 75515492 CTGTTGTTCCAGGCCCCTCAA-TGACACCGCAGGCGTGCGTGGTGATGGCCCACCTTCCTCccatcaccaccatcaccatcatcaccaccaccGAGGTGGAGAGCCCCCCGGGGACACCTTTGCCCCGTTCCATGGCTATAGCAAGAGCGAGGACCTCTCCTCAGGGGTCCCCAAGCCCCCCGCTGCTTCCATCCTTCACAGCCACAGCAACAGTGATGAGTTTGGACCCTCTGGCACTGACTTCACCCGTCGGCAGCTCTCACTCCAGGACAACCTGCAGCACATGCTGTCCCCTCCCCAGATTACCATTGGTCCCCAGAGGCCTGCCCCCTCAGGGCCCggaggtgggagcagcggtgggggcagtggtgggggtggcggaggCCAACCGCCTCCATTGCAGAGGGGCAAGTCTCAGCAGTTGACAGTCAGCGCTGCCCAGAAACCCCGGCCATCCAGTGGGAATCTGTTGCAGTCACCGGAGCCAAGTTATGGCCCTGCCCGTCCACGGCAACAAAGCCTCAGCAAAGAGGGCAGCATTGGGGGCAGCGGGGGCAGCGGTGGCGGAGGGGGTGGGGGGCTCAAGCCCTCCATCACCAAGCAGGTACGTGAGGGTGGGAAGAAGGACGGATGGGTGAGGAACAGGGAGGGTGGAAGGAAATGGCTTTGTGGAAGTGGGGGCAGAATAGAGTCTGGCATCTGAAATCATACTTTTCTCACATCCTCtcattcattaaagaaattgtatacagagtccctgctaggtgccatgtcctgttctaggcactgtgggtttgacactgagtgccacacacaccct------------------------------------------------------------gccct-----catgaagctcacctctc----cagag----gggagacatgatatgtaattaaa----------taGCATTCACAAGGAGATTGAGACTAGAGCAGGGGAATGAGATGGGAATGGTCACCTTCTTTAGCAGTGCTCT---CTCCTAAATGCACCCTACCTTTTCCCACCTTTCCTCTCTCT--TCACTTCCACCTTGCCCCATCCCAGCATTCTCAGGCACCATCCACACTGAACCCCACAATGCCAGCCTCTGAGCGGACAGTGGCCTGGGTCTCTAACATGCCTCACCTGTCAGCTGACATCGAGAGTGCCCACATCGAGCGAGAGGAGTACAAGCTCAAGGAGTACTCTAAGTCGATGGATGAGAGCCGGCTGGATAGGGTACGCTGGGCCCC-TCATCT---------------TCCCATTACCCACAGGGGCAACCTCTAGATGCTTCTCAGGGAAGGACCCAGGGGTCAAGTAGTTACAGTGGAAAGAAGAGACAAAGACCTGATCTCCTTTCTTAAGAAGTGTCCAGTCTATTAGGGGACACTGGGTACACAGTCTGTCGGAAAGCCAACTTCCAACTTTATTTTGTGGCTTATACACATCATAGACTGCGGAGAAACGTTTTATGTTAAAGCTTATTTCCATTTTATTTCCATGTTCTTCCCCAGGGAGAACAGAAGCCCCGATTCCTATGACTACTCAGGAAAGGGACAGCTAGCTACTCTGCCAGCAGTGTGAGCTGATAAATTGGGTGGGGGGCCAGAGGGCTGCAGTTGTACTACAGACCATGTCCAGCTTACCCAGGCATTGTTCCACCAGCACAGATGATAGAGGGTTGG-----------TGTTGGAAAGTGGTATATGTTGGCCCACGTGTGGAAAGACCA----GATCCTCAGCTGGTGGTGGCCTAGAGCAAAAGACAGCAAGAGCTC-AGGGCACACACACATAGCTCAGCAGT--GCTCCTTGGAGAGGCTGTTGCTCCAAGGGCTCTGAAGAAGAGGGTGGCTGTAGGATTAGGTTA-ACGTAAAGACTGTACGACTCCAACTCGGGGAAGCAGAGAGAGGTTTCTTGGGAGCTGTGGTTTTTGAGCAGAGGAAAATGTTGGGACTGTCT-AGATGGACTTGGTATAGCAAgtcccatgagagaattaagccctaatg-----cccaaggtagccacctttggtaataaatg-acatctctcctttgcttccagagtggggttggt----tctgtatgtatcatctttggagaatgagaaaata--ctctcaagtcgttttttctgtactatgacttggatgagatatttttgttgaggaaggctCTAGAAcagtaccatccagtagagttttctgcagtaatgagaaacgttctatgatctgcatcgtccgtatggcagtcaccagcctcatgtggtt-gatgcagctgaggaaggaaattttgt------tttatt a score=227570 s hg19.chr6_ssto_hap7 4893982 4537 + 4928567 taaattttaaatagctacatgtgggctggtggctaccatattagacagcac---agCTGTAGACTCTAGAGCCAATAGGGCAGATAAAATGACTCTTCTGAGCTCTTCCAGCTCTGGAATTCCTAGATTCTCAGCCTAGAATTCACTTGTAGACCTCCTATCCTTGGCACCTTGACAGAGCCAAGGAGAGGGTCACATGGAGGACAGCACCTGCCTTTCCCCCGTCAATTGCCTTTTCTTCCTATGTCTCCAG--------CATGTGTTCTGGGGCCTGGCTTAGGGCTGAAGAGTCACCCTA-TTTTTAATTTCTGAGCACAGTTACTCAAGGTGTGTTTGTGAG-------TGTAGGTTTCTGTGTGGGTCTT----------------CATGAGGGGCCATACATAGAC--CTCAGGGTGTGGGAGTCTGTGACCTTGCTCCATTTTGAGGGAACCTCAG----CACCATGGCAGGGTCTTCTCAAAAGCAGGTGTGT-GGATATGATCCACAGGCAGGGAAGGGGTTGGGGAAGGCAGCTGGAT-----GTCCCTCAACATGCAGTGGCTGTGCTTGGCAGACAGGGATGGAGGCTGGGTGGTGGGCTTGGGGTGGGGCGCCCCTCATAGTGCGGGGTCGTGTGCCCGGCGGGCAGGTGAAGGAGTACGAGGAGGAGATTCACTCACTGAAAGAGCGGCTGCACATGTCCAACCGGAAGCTGGAAGAGTATGAGCGGAGGCTGCTGTCCCAGGAAGAACAAACCAGCAAAATCCTGATGCAGTATCAGGCCCGACTGGAGCAGAGTGAGAAGAGGCTAAGGCAGCAGCAGGCAGAGAAGGATTCCCAGATCAAGAGCATCATTGGCAGGTGAGGGGCGGCCTGGGGAGGGGGTTGTGAGGGAGAGCCTGAGGCTGGAGAGAGCAAGTGGGCGAGCTACTCCTCTGACTCCCATCCCCAAACTCAGGAGCCCACCAGGAGAGCCCACCACTCTCCTCCCCAGGAAGCCACCCACTCACTCATCACCAGATGGAGAGAAACCCCAACCTGCTTAGTGCATTAAATATCTCTTTACCAAACCCTGACCTCTCTTCTGATAGAGTAGCTTCGGAAGCCCTTGGAAAATGTACCTGTTCCTGTCCAACCATCACTGCATTTGCATTTACCCTAGGCCAGAGCTCCCCACTAGTTATTCTCAACTTAACCTGTGATGTTCACTCCAAACCTAAGCAGGGCTCCCTAGCCAGAGTAGGCCCTG------CCCTTCCTGGGTGGACCCTCCCTCTCTAGCCTTGGAAAGGTGTTCTGTTAGAAAGGG---------------------------------------------TCTTTTAGCCTGTGTATGTTTTCAGCTGCTCCAGCAAGTCCTGGGCTCCAAAGAGGGTATCCTCAGCAAAGAGGTCAA-TTATCTTCAgagtggtggggtcggggtgggggggaccctgggcgcactccaaccagagccacctccattttgatccattctaaatgtattttatgtaagatttaattagaagaaaagggctt--cttgaaatattttttgaaaaccactgCTCTAATTGATATCCTTTATGATAAATCACCTCGAGGATCTTCA-------------------------------------------------------------------------------------------CAGTGAGGTGACATGGGGGATGCAGAAGCCAGGTCCTCAGCCATGGAAGGTCTGGGGAAGGGGCACTGCTGTCCTGATTGGGACGATGGAGGCCT--GGAGGTGTCTGGATGGTAGAAGTCTTTGAGGCACAGAAAGCTG-CCTTAGCAGGGAGGTGTAAGGGTTCCTGGGAGGAAGGTGGAGAGCATGATCCTGAGGAACAGGGAGTCTT-GCATCACGGCAATGGAGGGACTCTGATTCTAAGGGATAAGGATGCCTGAGGTTTTTCCAGAGAGCTATGGGG-------------------TTCCATGGGCAGGCTCTGAGCCTGTGCCCGCCACTAACCCCACTGAAGCCCGTCCCTTCAGGCTGATGCTGGTGGAGGAGGAGCTGCGCCGGGACCACCCCGCCATGGCTGAGCCGCTGCCAGAACCCAAGAAGAGGCTGCTCGACGCTCAGGTGGAAATTACAATGTCATTTATCTTCTCCGTGTCCCATCCCCATCCATCCCACTGTCTTTCGTGCACTCACTACACCAGCCACCTAGCCCCATCACCATCTGTCTCTCATAGTCTGCTGTTTGTCCACTGGCTGCTCCTGGCAGC-CCCCTAGTGACCCCATCTTCATCCCATCGTCTGTGCCTTTGTCACTCCTGGCAGCGTCAGCCCAACTCCTGTGCCTTCCCATCCAGTCTT-CCCACTCCTCTCTGCATCTCAGGACCTTCTCTACCAGAACCTTGGTCTTTCTGCCCCTAGACCCCACCTAGTTCCAAGAACCCCTGCCCCTTCTTTGCTCACTCCTATTCAAGCCACGTTGTTCAGCTTCCTCTGCGCTCTT---GGGCCAGAGGG-CTAGAAGCTGCTGTTTTCTGGAATAGAGCACAGGGCAGTATGATCTGTAGTTTCTCCAGGCCCTGGCCGGTACCCTGAAAACTTGGGGACCCATCACCTCTGTTCTCTTGGCTCCCTAATTTTCCTGTCTCCTTGGCAGCTCCTGCATAGCTTCCTCTTCCTGACTCTTCAGATCTTGAAGGCCTTCC---------ATCCTGTAACCTCCCTTTGCCCTCAGTATTTAAGTCCAGCCTCCCTCTGGCCTCCCTCCCACTCTGGCCCTCAGACCTTCCCAGCTGCCTGCTGCCCAGCCTCTCTTCTCACAAGCCAGCTTCTAGGACCTCCCTTCTGCACCCTTACCCCTTGCTTTCCCAAAATTCTGCTCATTTTCCTACCCATACTCCTCTTT-----GCTCTGACTGCTAGGCTCCCCCCGCCTGCCATCCCCCCACCAAGGCTCCTGACCCCATGACCCCACTCTCTCCCACTGCAGCTCCTCATCAGGTAATTCTCCTGGTTCCGCTTTGGCCACGGGCGGAGGACACAGGGGGAGGTGACTCCGGACCACTGCAGGTTGGTCGTGAAGCCCACTCCCTCCAACACCTCCGGAGCCTCTCCCC--------TCTCACTGCTGCCCTCCACACCCAGAGAACCTCCACAGACTCCAGCCCTCCGACACCT---GCACAGATCCATCTCCCAAGACACCACCCAAAGAGAGCATTTGCTGCTGCTTCCCAGAACTGTCCAACAATACCTTAGCAACACCAAGAGTTGGGCCCTAGATGGGCCCAGCACATTCACAGGTCACACCCACTTCCCTG-CAAAACCCACCCCCTCCCAGCCTCCTCCTGACTCTAAGCCCTCCTCTTCCTCTACCTCTCCAGTGTATGTCTGTCACCCCCCATTTCACCAGAGCGTCCTTAGGGGCTGGGGGTG----------GGTTTGTTAATGGGGTGGAGGCAATGATGGGTTGGAGGATCTTGGCTATAGGGGCTGTGCTGACTGCAGCAGGTAGGTTGGGTTTCCCTCTTCCTTCCCTAATCTTGGTTCTCTACCCTCCTTTCCACTCCTCACCTGATTCTCTCTCTTCCTCCTCC-TTATATCTGTGAGGCAGAAGGCATCTGAAGCTCATATTAGCCCCCATTGGGTGGGAATTAGGAGTGGGTAGTTAACTCAGGGAGACTT-----GAGATACCCTGGAAAAAATGCTATTGA-GATGTCCTGACATTAGGCAGGGTGGATGGAACAAGAAGGAGCAAGAAAGGAACCTCAGGCAGATGTTAGGACATGGACTTGATCATGTGGCCTGGGAGTTTAGAAATGGGGAGAGACATCCTCCTAGATCAGATCGTGGGCTCAGTAGGCATGTTGATTCCCAGGGAGAGGTGCCAGGAACAGCATGGTAAAGAA--TGTACTCTTCACAGCTCACATCCCCAGGTTGCTGATGCCACTCACTCCCCCTCTCCTGCCATCGAGTGGCCTTGCCGGACACATCACCCTACCTAAAAAGCCAGTAAATGAGAACCTGTCAGCTATAGCCATCATTTCTGAGATGCGAT-TTTCTTTGGGATTGAGCTGCAGTGGGCAGTGGCTCCTTACACTGTAATTTTAATTCTCTGCCTGCCCAGCCTCTCTGTCAAAGTAGCTGGTGATCTATAAA--GATGCTAAAAGGCACCAGGGGACTTTGCCATTTAAAGGACTCCTGCAGTGAATTCTTTTGTAAAATGAATAATGGCACCCTAATTTATCCACTTTCTAAATTTGGGTCCATGGGGGTGTCCAGGGCATGCTTATGTGCTGTCACCAGCAGACAAACAGAGGGAATGGAATCTGGGGGTTCCTTCCCT-GCTCTCCCGCCATACTCAGGATACCCTACCATAAGTGATTTCCTCTC--ACTGACTTGCAGAAAATGTGTGAGATACCCAGCAAGCTAAGAAGGCAGTTTTGCTGGGTATCTCATACCCAAGGCTGGGGTTTGGGTGATCTGAGAGGTTAGCTCCTTGATCCTAGGATGGAAGGGAGAGCTTATATAGAAGCTTTTACTTGGAAGGTTTT-GTATCCTAAGGTCAGACATAGCTATAT-TACCAAGCCTAAATGCCATGTGGCCCAGGAAATAATTTGGACATTTGTTCTAAACCACTTGTGGTAGGTATTGGTCTCTCTGCAACTCAGCCATTAA-TTAGAAATTAGTTTTGAGCCTGAATTTTAAAAA s canFam2.chr12 5858638 4507 + 75515492 tacgttttaaatagccacacatgg-ctagtgtctactgtattggatagcacCACAGCTCTAGACTCTAGAGCCAGTAGGGCAGATAAAATGACTCCTCTGTGCCCTTCGAGCCCCAGAATTCCAGAATCATTATCAACAGAGGCAGTCTTAGAT-TCTCAGCCTGGAGTTGTT--TAAAGCCCAG---------ACCTGGA--ACCCCACATAGCCTCTCCTTATCCAGTGTCTTTTCTTCCTGGGTCTCCCCACCCTCCCCATGTGCTCTGG---------TTGGACTGAGGAGTCACCTTAAGCTTTCATTTCTAGGTAGGATCACTCAAGGTGAGTGGGAGGGGAGTCTGTATATGTTTGTGTGTGGGTCCTTGTGTGTCCAGATTTACATGTGCGGGCAGGTATATACTGCTCAGGGCATGGGAGCATATGATCTTGGTCCATTTTAAAGGAGCCTTAGGTAGCTCCATAGAAGGGTCTTCTCAAAAGCCACCATGTCTGGTATAATCAGCAGGCAGGGAAAGGACTGCAGAAGGCACCTGGGTTATCTGTCCCTTACCATGCAGTGGCTG--CTTGGTAGGCAAGAATGGAGACGGGGTGGTGGG-TCAGGGTGAGGCGCCCCTCACAGTGCGGGGTCGTTTGCCCGGCGGGCAGGTGAAGGAGTATGAGGAGGAGATCCATTCACTGAAGGAGCGACTACACATGTCCAACCGGAAGCTAGAAGAGTATGAGCGGAGGCTGCTGTCCCAGGAGGAGCAGACCAGCAAAATCTTGATGCAGTATCAGGCCCGACTGGAGCAGAGCGAAAAGAGGCTAAGGCAGCAACAGGTGGAGAAGGATTCGCAGATCAAGAGCATCATTGGCAGGTGAGGGGCGGCCTGGGGAGGGG-TCACAAGGGAGAGCCTGAGGCTGAGGAGAGCCAG----CAAGTTCCCCCTCTAGCCTTCAGCCCCAAACTCAGGACACCATGAGGAAAGCCCACCACCTGCTCCCAGAGATTGCCACTCACT-ACCAATCACCAAATGGGGAGAAACTTC---TCGCTCAGGGCATAAA------------TGAACCCTGATCTCTCTCCCGATAGAGTAACTTCTTAAATTCTTGGA--------------------------------------------------------CTCCCCACTGGTTAGTCTCAATCCAGCCTGTGATGTTCTCCCCAAATCTAAGCAGAGACCTCTAGCCAGAGTAGCCCCTAGCCATTCCTATCCTGGGTAGCCCCTCCCTCC--AGCCCTGAAAAGATGTTCTCTTAGAAACTGAATGACCAAAAAAAAAAAAAAAAGTAAAAGAAACCGAATGACCCTTCTGTTAGCATATGCACATTTTCAACTGCTCTGCCAAGGCCTGGCTTCCAAAGAAGGTATC-TCAGCAAGGCGGTCAGCTTATCCTGAGAA-------------GTGGTGGGACTCCAGGCTGGACTCTAACTAGAGCCAGTCCCATTTTGATCCACTCTGAATGTAGTTTGGATTAAGATTAATTAGAAGAAAAAGGCTTGACTTGAAACTTACTTTGAAACCC--TGTTGTAATTGACATCCTTGATGGGAAATCGTTTTGAGAATCTTCATCAAAGGCACGGAGGTGCTGGGAATGATGATTGTAGAGACCCCTCTTGGTCTTGGGGTATCCCAGGGGTGGCACTGGTGGTGTCCTAGGTTCAGTGAGATGGAATGGGAGATGTAGAAGTGAGGCCTTCAGCCACAGAGGGGCTGTGGGAGGG----CACTGTCCTGAATGGGAGGGTGGAGGGCCAAGGGGGCATCTGGGTGATAGAGGTCTTTGAATCCCAGAAAGCTGTCCTTAGCAGGGAGATGTGAGGGTCCCTGAGGGGAAGGTTA----------------GTATAGGGAGTCTTTGGGTCATAACAATAGAAGGATTCTGAGGGCAGAGGAGAAGGACGCCTGAGGCTTTTCCAGAGAGCTGCAGGGGCTCCCCCAGGATCAGGAGTTCCACTGGCAGGCTCCGAGCCCGTGCCCGCCACTAACCCCACTGAAGCCCGTCCCTTCAGGCTGATGCTGGTGGAGGAGGAGCTGCGCCGGGACCACCCCGCCATGCCTGAGCCGCTGCCTGAACCCAAGAAGAGGCTGCTCGACGCTCAGGTGGAAATTACAATGTCATTTATCTTCTCCGTGTCCCATCCCCATCCATCCCACTGTCCTTTGTGCACTCACTGCACCAGCCACCCAGCCCCATTGCCATCTGTCTCCCACTGTCCTCCATTTGTCCACTGGCTGCTCCTGGCAGCACCCCCAGTGACCCCATCTTCATCCCATCGTCTATGCCTTTGTCACTCCTAGCAGTGTTAGCCCCACCCCTGTGCCTTTCTACTCTGTCTTTCCCACTCCTGTCTGGGTCTTGGAGCATCC---AGCAGAACCTCAGTCTCTTTGCCCCCAGATCCCACCCAGTTCCTGGCACCCCTGCCCCATCTGTGCCTGTTCCTGTTCACAC-AGGGAATTCAGCCTCCTCTGAGCTCTTCTTGGGCTACAGGGGCTAGAGGCTGTAGTTTGCTAGAAGAGAGCACAGGGCAGTACGAGTTCTAGCTTC-CCAGGTTCTAAATGGCCCCC-----------------ATCACCTCT-------TGCCTCCTCAATTTTCCTATCTCCTGGATAGCTCCCGAATAGCTTCCTCCTC-TGACTCTTCAGCTCTTGAAAGCCCCCCCCCACCCCCACCCTGTAAGCTTGCCTT-CCCTCAGTATTTAACCCCAGT-----GAAGGCCTC----------TGGTCCTTAAACCTGTCCAGCTCTCCAGCGCCC----TCTGTCCTCA---GCCAGCTTTTAGAACTTCTATCCTGCACCCTTGCCCCTTGCTCTCCCCAA-TTCTACT----TTCCCACCCATGCTGCTCCTTCCTCTGCTCTGACCGCCAGGCTTCCCC-----ACCA--CTACTGCCAAGGCTCCTGACCCCATGACCCCACTCTCTCCCCCTGCAGCTCCTCATCAGGTAATTCTCCTGGTTCC--TTTGACCACGGGCGGAGGACACAGGGGGAGGTGACTCCGGACCACTGCAGGTTGGTCATGAAGCCCACTCCCCTCTGACTCTCTGGAGCCTTTCCCCACCCCACCCCTCACTGCTGCCCTCCACAT-----------------ACCCTACCCTCCTGACACCTCCTGCACAGACCCATCTCCCAAACCACTGCCCAGAGAGAGCACTTCTTGCTGCT-CCGGGAACTGTTCAGGGACACCTTGCCAACACCAAGCATTTTACCTGGGACACGCCCAGCACATCCCCACATCTC-------TCTTTGACAAAACCCACC---GCCCAGCCTCCTCTCAA----------TCCTCTGCCTGTGCCTCTCCAGTGTATGTCTGTCACCCCCCATTTCACCAGAGCGTCCTTGGGAGTTTGGGACGTTGGGAGTGGGGCTTGTTAA-GGGGTGGCAGTGATGACGGGTTGGGGGACCCTGGCTAAAGGGGCTATGCTGACTGCAGCAGGTAAGTGGGAGTTTCCTCTTCTTTCCCTAATCTCAGTTCTCCACCCCTCCTCCCACTCCTCACCTG--TTTCTCTCTTCCTCCTCCCTTATATTGGTGAGATCGAAGGCATCTTTAGCTCTTATTGGGCCCCACTGGGTAGGAACTAGGAATGGGGAGCTAACTCAGGAAGACTTTGGGGGAGGGAGGCTGGAAAGAATGCTTTTCATGATGGCAGGACACTAGGCAGGGTGAGTGGAACAAGGAACA--AAAAAAGGAGCCTC-GGCAGATGTCAGGACGCAGACCAGCCCATGTGGCGTGGGAGTT-GGAAGTGGGGTGAGCCGTCTTCCTAGATAAGATCATGGGCTCAGTAGCCATGTGGATTCCGAGGCAGAGATGCCAGGAACAGCATGTTAAATAAACTCTGTTCTTCTCAGC---------------------GGAGCTCACTCCTCCTCTCCCGCCACCCAGTGGCCTTGCAGGATGCA--GTCCTACCTACAAA-CCAGTAAATGGGAACCTGTCAGCCACTGACATCATTTCTGAGGGGCTTTCTTTCTGTGGGATTGATCTGCAGTGGGCAGTGGCTCCTCACACTGTAATTTTAACACTCTGCCTGCCCAGCCTCTTTGTCAAAGTAGTTCGTGATCTGTAAACAGATGCTAAAAGGCACCAGGGGACCTCACCATTTAAAGGACTCCTGCAGTGAATTCTTTTGTAAAATGAATAATGGCACCCTAATTTATCTACGTTCTAAATTTGGGTCCATGGGGGAGTAGGGGGCATGCCTATGTTCTGTTGCCAGCAGACAAGCAGAGAGAAGGGAATCTGAGGTTTCCTTCCCTTGCTGTCCTGCCATACTCAGGATCCCCTACCATACATAATTTCCTCTCTCGCTGACTTGGGAGAAGTGTGTGAGATGCTCAGCAAGCTAAGAGGGTGGCTTTGCT--------------TAAGGCTGGGGTTTCAGTGACCTGAGAGGTGGGTTCTTTGATT------TGGAAGGGAGAGCTGATCTCGAGGCCTCTACTTAGAATATTTTTGTATCCTACAG--AGATATGGTTACATGTAATGGGCCTAAATGCCCCATGGCCCGGGAAATAATCTGGACACTT--TCTAAATCACTTTT---AAGCACTGGTCCCTCTGCAATGTAACCGTTCGCTTAAAAGTTAATTTTGTGCCTGTATCTTAAATA a score=5964 s hg19.chr6_ssto_hap7 4898522 77 + 4928567 AAGTGTTGCCCCCAGCCCACACACACACACAC--GGACATGTACAGTACAAACCCCAGATAATTACAACAGCCAAAGAG s canFam2.chr12 69649531 79 - 75515492 AGGGGTTGCCCCCAGCCCACACACACACACCCCCAAATATGTACAGTACAAACCCCAGATAATTACAACAGCCAAAGAG a score=419502 s hg19.chr6_ssto_hap7 4898599 7175 + 4928567 AGAAGGAAGTGAATTTCCCAACCAGAAGCGT---AGGGAAATTCAGATGGCTTTCTTTTCTCCCAGCAGAGGAACAGAAGGCGGAGCTAAGGGCAGGAACCAGGAGTTGGTCAAGGAGCTATAGGAGGTGATGAGAGTAGAACCAGGGGTAGGAGC-TGGTCTGGTACCCCTCACCCTCTAATTGGGAGCCCAGGGAGAAGGACTGAAAAGAAGATGGGAGTGGAAAAGAATAAAGCCAGTTTCTGCTTCCCAGGGATGCAGAGATTGGGGCATGCTGTG--TCTGCAGAAGCTCCTAGTCATTTCCGCCATAATTGTGAGAGAGAGGGGCAGCCCTCCCACAAGATTTTTCCCTTCCCATATCACTTCCCTGAATCCCCTTCCTTTCCCCC---------------CAGTAcagttaaacctctctctaatttggaatgttatatttgagaagatggccactgtgaataagtgacaaa-cggaatgacagtgtctatttaatgaaatgcatgtcttcaaaatatatacagaa-------ctcgatgaacaaggctttttccactc------ctcagggagcatgcattaatgaatagataggattcaaaagtctgttttctggtatgggttaaatatcccctcctacagacatatttccaccactaatttgcttagtacaccttttcttcacagataaaggaaaatgcaagctcagtttttcttcagattatgaagaaattccaaatccacaggggtttggattaatgaggttttgctgTACTGCCTCCCCTTATTCC-TCAACATGAAGTTCCCACCTCGGATTGGGGATGGG-TGGGAGGGGGTTTCA----AGAGGAGGAGGGTGGGATGGGCAAGGAATATACACAGGTGAAGCCAGAGAAGGGTTAGGTTGGGGGTGCGGTGGGAACTTGCTGT-TTTGATCTGGTTTCCTGGTGTGACACTCTGGGTTAAAGGCTTGAAGGCCCCTGTTAGGAGTCTAGGGGTGAGATTCTCTTCTCTCTGATCCCAGAGGACGTTAACTTCTACTGCAGGTGAGAAACAAAATAGGAGGATGGTG---GGGACTGTCCTGGGAGGAGGGGGTGGTCCATGGCTTGTGGTGTGGGCTGGCTATAGGGGAGGCCACTGCTAGGGGA-CTGGCATCCAGGCCCCCTTGAAGCGTCTCAATAAGTCCGCGCTCTCCTTTTTGGTGTCTTGCAGGAGAGGCAGCTTCCCCCCTTGGGTCCAACAAACCCGCGTGTGACGCTGGCCCCACCGTGGAATGGCCTGGCCCCCCCAGCCCCACCACCCCCACCCCGGCTGCAGATTACGGAGAACGGCGAGTTCCGAAACACCGCAGACCACTAGCCCACCCAGCATCAGAGACCTTCTCTTCCTTTCCTGTGCACCCCACCCTGTAACAGCACCAACCACCAGGATTGGACATCACCGAGGAACAGCGGGATTGCCTCCCCGAATGCCTCCCTGGGAGGCACACTGATTGCCCACCCCCACCACTGCACCATTTCCAG-GAGGGAGAGTGGGGACCCTCAGCCGCCCCCTTTTCCTTCCCATTGGGGTGCTGCCCTCTCTTTGACCCCCAGGGACCCTTGCCCCAGGACACCGCCTACCCCGTACAGACCCCTTCACTCCGGGGTGCTATCCCCATCCTCTGCCTCATCGTTCCCCTGAGCACTGGGGGACAGACCCTCACCCCCACCCTGGGGGTGTGGCACCTCCAAACTTTCAACTTCAGGGTGATTTTTTTAGCAGTAACCAGAGCTGACAATCTAACTCCCCTCCACCGCCCCATTTTGGCCTCCCCTGCCCCCCTTGTTATGGGGAGGGGACCCCGGGTGAGGGGGCCCTATTACCCCTTGATTTCTCAGGAGCGTCTGGGGGGGCTCAGCACGCACAAACTCCTTCTCCTTCTACCACTCTTAAATTTACTCCCTCCCCACCCAGAACCCAGATGGGGTGGAGGGGGCCACCGGGGCAGGGAGGGGGCGGCAAGGGGGGAATGGGAGTTGTCTCCCCTTCTCCCCACACCTGATCTGCTCTCGGCTGGTCCCAGAGCGGGGTGAGGGGGCTTATGCCCCCCCCTCCCCCAGTGTGTTGGGTGGGGTGGAATTGAGGTTAGGGTGAGGGGTCAGGGTTTAGGAGGGTGTGTATGTT-GGGAGGACAGGCTAGTTGATCTGTCCTACTCTGACACACA--GTCCCCTCTGCCCCTTCCTTCTCTCTTCTTGGTCTCTACTCCCAGGGGGAGGGGGGAACTTACTCTAGGAAAAGCCATGTCTCTCTCCCCCAGGGTGGGGGGACCTGTGTTGGAGGAGGGGTGTTGGGGGGCCCCCTTCCATGACTCTGTCCCCT--GGGGGAGGTAGGACAGGGCTGGGcttccctctcatcctccccct--cccaatctccttccacctccctccctcccgccagctccACGATTTTTCGGTGTTTCTCTGTACATAGTTTTCTGGCGGGATAGGGGAGGTAGGATGGATGGGGTTTGGGGTGGGTAGGCCATGGGAGGGGAGAAGCCCCTCCTTGGCACCCCCTCTTCCCTGACTGCTGTCCCCTACCCAGCCTTGCCCCCTTCATCCTTT--TGCGTTTGGTATTGAGACTCTC-CTAGACTCTACTCCTCTTTCTTTTGTATGGACAGTTCCCCTTCAGTCCCATCCCCCTACACA--TACACCCAGCCGGGGCCAAATTTATACTTATATAAAAGTTGTAAATATGTGAAATTTTATCCCTGTGCCCTTTCCCCACCTCAGGCCCTACCCCTGGACCCTCCCC---AACCTTCCTTCTCTCT-TCTTTGGCTGTTGTAATTATCTGGGGTTTGTACTGTACATATCCGGGG-TGTGTGTGTGTGGGCTGGGGGCAACCCTTCTGTACAGAGCTTCCTGGCcccctccccccccgcccctctgcttccctccccacccaccacctcAAGGGTAGGGAGTTGCTCTTCCTACCTGTTTTATTTTGTTTTCTCGTTCTCCCTCCCCACC----------CCACTCCCAGCCTTATCTATCCCCCCTCACTGTCCCCTTTTCTCCACTCCCAGCCCCATTTCCTTTTTTTCTGGAGTGTGTGGTGAAACAGAAAAAAACATGTTTAATAAACGGAGATTGTTCTTTTATCGCTGTGCCGACTTTCTTAGGCAGGGCTCTCCAGAC-------------CTGTACGGTGGTAAGATCTGCTTTCTGAAAGGAAGCTGACAGCCTGAGAGGAAAACCGTATATCCCCACCTGACGCCACACTCTCCTCATAGAATGTCACTCTCCCCTCC--CAATGAGATTTTTTATATTTTAGAGCAGGAGTTTTGCACCGGCCAAACTTCTCCAATCTAACTCTCCCCTCACCACTGTGTCACTTAGTCC----------GAGGCCAGGAA-CAGCGGCGTTATCTGATAAAAGAGTTCATGTATATATC------CACATTTATCTCT---TTTAAAAATTACCTAGAAATAAGGTTTCTTTAATTGCTGGTTAAAATGCTCCCGTGCAGAAAACAGGAAAGAACCTGCCTGGTTCCTTAgcaaatctgagttccagtcccaggtccactactattagctgagtgacgcttccagcc--cgtttcccccgcctggaaactgaggacggcaacccccaccctcgcagggccggtgggaagacacaaagtgatgtgggcaagtgccaggcccacatggtaagtacccaactaatCTCGCCCCTCTCAGGACCTA-CCGGGGGCGGGTGCTACACTTAATCACCGGGAAACGCAGCTTTCCGGGGCGGCTGACGGCCCACCCCCTCCGACCGGGCTGTTCTCTCCCGGGCCCTGCCTCTCGGTCCTCTGCAGCGGGGAGGACTTCAGCAGCTCCCCGGGACGCCCGTTGCGAGGACACCCTGGGCCTGTGCCCTCCTACTAGCACCGCCCTCCTCGTCTGCAGTAGCCAATCAACACGAGGCTTGTAGGCTGCCGTTCCTCGATTGGCTACGGCTCTAGCTCCGCCCGCCGCACTTGGCGACGGTGTCCGGCGGGGAGGCGGCGGCTTCCGGTCTGGGACGGAGCTGTAGCGGCACTGTAACTGCGAGGGCAGCGCCGCGTGTGTAACGGCGGGGGCGTGTCGGCGGGAAGGACAATCGGGCCGGGACTCGCGGTGTCCGGGTGACCGCGGCTTCCCGGGAGCAGACCTCTGTGGGCACTGTGAGGCGGAACGGAGCGGCGGGGCAGGAGCTGTTCTGGGCAGGTGAAGGCAGGCTGGTGGCTGAAGGACCTCCTTCTTATCTTCCACAGGGGCTGGAAGTTAAAACCCCTGTTGGTGTTTAGTGGTGGTGGTTGTTGTTGTTGTTTGTTTTTGCTTTCTTGGTG--------TGCGGGACTGATTTGCAGAAACCGCCACTGACTTAAAAGTTTCCAGTTATTGCTCG--TGGGGAGGGGGTTGTTTGAGAAGATGTGGCTCCCTTTATCCAGGGCTTCTGTGACCTCCATCTTTTTCCTCTGCAGCCTTCATCCCGCGTGGAGTCTACCCCCAAGCCCTTCTCCTC----TTCCCAATTCTTG-----TCACCTTCGAGGAGGCCAT--GGAAACCCCAACACCTTTGCCGCCTGTACCCGCCTCCCCGACCTGCAACCCAGCCCCACGGACAATCCAGATCGAGTTCCCACAGCATAGCTCGTCGCTGCTGGAATCTCTGAACCGCCACAGGCTAGAGGGAAAGTTCTGTGATGTGTCCCTCCTGGTGCAGGGCCGGGAACTTAGGGCTCATAAAGCAGTGTTAGCTGCTGCCTCTCCTTACTTCCATGACAAGCTGCTTCTGGGGGATGCGCCTCGTCTCACTCTACCGAGTGTCATTGAAGCCGATGCCTTCGAGGGGCTGCTCCAGCTCATTTATTCAGGGCGTCTCCGCCTGCCACTGGATGCTCTTCCTGCTCATCTCCTTGTGGCCAGTGGCCTTCAAATGTGGCAGGTAGTAGATCAGTGCTCAGAAATTCTTAGAGAATTAGAAACTTCAGGTGGTGGAATTTCAGCCCGTGGAGGAAACTCCTACCATGCCCTTCTTTCCACTACATCCTCTACAGGAGGCTGGTGCATTCGCTCTTCGCCTTTCCAGACCCCAGTACAGTCCTCTGCTTCTACTGAAAGCCCTGCTTCCACTGAGAGCCCTGTGGGAGGGGAGGGAAGTGAACTGGGAGAAGTGCTGCAAATTCaggtggaagaagaagaggaggaggaggaagatgatgatgatgaggaCCAGGGGTCAGCCACACTCTCTCAGACTCCTCAGCCCCAGAGAGTATCAGGGGTTTTTCCCCGTCCTCATGGACCCCACCCACTGCCCATGACTGCTACTCCCCGAAAGCTTCCAGAGGGTGAGAGTGCACCACTTGAGCTTCCTGCCCCTC---CTGCACTGCCCCCCAAAATCTTCTACATTAAGCAGGAACCCTTCGAGCCTAAGGAGGAGATATCAGGAAGCGGAACTCAGCCTGGAGGAGCAAAGGAGGAAACCAAAGTGTTTTCTGGAGGGGACACTGAAGGGAATGGGGAGCTAGGGTTCTTGTTGCCTTCAGGGCCAGGGCCAACATCT---GGGGGAGGGGGTCCATCCTGGAAACCAGTGGATCTTCATGGGAATGAAATCCTGTCAGGGGGTGGAGGACCTGGGGGAGCAGGCCAGGCCGTGCATGGGCCTGTGAAGCTAGGGGGGACACCCCCTGCAGATGGAAAACGCTTTGGTTGCCTGTGTGGGAAGCGGTTTGCAGTGAAGCCAAAGCGTGACCGGCACATCATGCTGACCTTCAGCCTTCGGCCTTTTGGCTGTGGCATCTGCAACAAGCGCTTCAAGCTGAAGCACCATCTGACAGAGCACATGAAGACCCATGCTGGAGCCCTGCATGCCTGTCCCCACTGTGGCCGTCGGTTCCGAGTCCATGCCTGTTTTCTCCGCCACCGGGACCTATGCAAGGGCC-AGGGCTGGGCCACTGCCCACTGGACTTACAAGTGACTGCTGAGGCTATACACTAGCTTCTAGAACAAGATAACCACTGCTGCTGATGGATACTTTTCCCTCACTGCCATGGCACACCAGTCATGGATCTTGTAATCATGCCAAGAGAATAGATACATTATGGACCTCTTGTTCTTAGATATGGGCCTCTCAGCCTGGCAGATG-TGGAAACTCAAATTTCTCGTCCCACTCCAGGTTTTGGCTAGCCAACCCTGCAGGAAAGTGGTTTATAGGCCATTCATACTTAAGTTGATCACTTG-CCCATGGTGGACATTTTTGTGGTGGTGATGTCCATTAAGGAAACCAGATTTTCAATTA----TTTAGTGAGAGAAGAGTTAGAGCAAAAGA--CAGTGGTAAATGTTTTATTCCGTCTCCATGAGGAATTGAAGGAGTTGGTCTCCA-CCTAGAGATACATTTGATTTACAGCTTAAGTAATTCAGAGGC----TAAGCTCTAAGCTTTTTTCTC-----TCATTGCTGGAATGATTTAAGCAGAAGTCCTTTTGTGTACTTT-TAAAATTGTATCTTTCCAGGAGCCCCTCAGATTGTACCTTGCTTTCTCACCAATAGACACCTTCCCGACACTTTT----TTAATGTTGTAGCTGAGCACTTTAACAAGTTGAGCATTCCATGTTTCATTCTTAGAACCTTC--TTTAATAGAGGGTCTTCCCTCAACAGCCTGTGCCTCTGGTCTACCTTTGACCACCACTGATAACTAATATATTGGTCACAATGACTGGAATGTGACTAGTGATCTCAGGAGATGG-CACTGTCCTAAAGTGCTGTCAGGGTGGCACCACTGCTCTCTGAACAACTTACCTTGGTCAGAGGGACTCAGGTTTGGGACAGCACAAGCTG--AAGGCTGGAGAGTAACTTGCATAGTAGGACCATACCTCTTCCTTTCCCATCCCACCCACATATGATAGACAGCCCCTCTGTT---GAGATATGGAGGGGACAGATACTGGAATCGGGGGTGGGACTTGCA---GTTACTTAAAATTTTTTAATAAACTGTGCCCTGAAACCTAAACTGACAGTGGACTGGATTGAGTAATTTGTGTGGGAGAG--AATGTGAGAATGGAGCTGCAGAGCCTTGGGTGTGTTCCTTAGGTGGCTAGGTTATGTTGATGGGGAAGGAATGGGATGGTATCACACCCATTCCTTGGATGGTGCCAAGAACACTCTTCTGGACT----------------TAGGCCCTGACCTGCTACTTAATAACCTTCAGTAGGTTGCCTTACt s canFam2.chr12 5863145 6960 + 75515492 AAAGGCAAGTGAGT-----GACCAGAAGTGTCATACAGGAGTACCACAGTGTGGTTCCTCTCCCAGCATAGGAACAGAAACCAGATGTGAGGGCAGGAGGCAGGAG--------------GCAGGAGCTGGT----------CCAGGGGTGGGAGTAGGGTCTGCTACCCCTCTCCCTCTAACTGGGATCCCAGGGAGAGGGATTGAAAGGAACATGGAGGTGGAAAGGAATGAAGC-AGTTT-TGCTTCCTGGGGACACAGGGATGGGGGCACGCTGTGCCTCTGCAGACACTCCTAGTCATTTCTGCCC----------AGAGAGAGGCAGCCCTCCCACAT--TTTTTACCATCCCCCATCACTTCCTCCAATCCCTTGCCTTCCCCCCTCCCCCCCACCACCCCAGTACAGTTAAACCTCTCT--AACTTGGACTGGTATATTGGAGAAGATGACTGCTCTGAACAAATGACAAAACTGAATGGCAGTGTCTATTTAATGAAATGTATGTCTTCAAAATACATACAGTAAGTGGGGCTCAATGAACAAGGCTTTT-CCACTCGAGGTCCTCAGGGAGCATGCGTTAATGAATAGATAG-ATTCAAAAGCCTGTTAGCTGGTA-------------CCCTCCTACAGACACGTTTCTACTGTTAATTTGCTTAGCACACCCTTTCTTCAGAGCTAAAGGAAAACTCAAGCCCAGTTTTTGTTCAGATTATGAAAAAAGTCCAAATCCGCAGGGGTTTGGATTAATGAGGTTTTGCTGTACTGCCTCCCCTTGTTCCCTCAACACAAAGTTCCTACCTCGGATTGGGGGTGGGCTGGGAGGGGGTTCCATCTAAGAAGAGGAGGGAGGCTGGGTAGGGGAAGATCCA---------------AGGGGTTAGGTTGGGG-TGAGGTAGGAACTTGTTTCATTTGAACTGGTTTCCTGGTATGACTCCCTGGGTTGAAGGC----------CTGTTAGGAGTC-GGGGGTGAGATTCTCTTCTCCCTGATCCCAGAAGATGT-AACTTCCTCTGCAGGTGAGAAACAAAATAGGAGGATGGGGTGAGGGGTTGTCCTGGGGGCAGGGAGGGAGACACGGTTTATGGAGTGGGTTGGCTACTGGGGGGGC-ACAGCTCGGGGAGCTGGCACCCAGGCTCCCGCGAAGCGTCTCAATAAGTCCGCGCTCTCCTCTTTGGTGTCTTGCAGGAGAGGCAGCTTCCCCCCTTGGGTCCAACAAACCCGCGTGTGACGCTGGCCCCACCTTGGAACGGCCTGGCCCCCCCAGCACCGCCCCCCCCACCCCGGCTGCAGATCACTGAGAACGGCGAGTTCCGAAACACCGCAGACCACTAGCCCACCCAGCATCACAGACCTCCTCCTCCCTCCC-ATGCACCCTGCCCTGGAACAGCACCCACCACCAGGACTGGATGTTGCCTATGGACAGTGGGATTGCCTCCCTGAATGCCTCCTTGGGGGGCAC--CAATCCCCCACCCCCAC---TGCACCATTTCCAGCGGGGAAGAGTGGGGACCCTTAGCTGCCCC-TTTTCCTTCCTGTTGGAGTGCTGCCCCCT--GTGACCCCCAGGGACCCTTGCCCCAGGACACCACCTACCCCACACAGACCCCTTCAGTCCGGGGTGCTATCCCCATCCTCTGCCTCATCGTTCCCCTGAGCACTGGGGGACAGACCCTCACCCCCACCCTGGGGGTGTGGCACCTCCAAACTTTCAACTTCAGGGTGATTTTTT-AGCAGTAACCAGAGCTGACAATCTAATTCCCCTCCACCGCCCCATTTTGGCCTCCCCTGTCCCCCTTGTAATGGGGAGGGGACCCCGGGTGAGGGGGCCCTATTACCCCTTGATTTCTCAGGAGCGTCTGGGGGGGCTCAGCACGCACAAACTCCTTCTCTTCCTACTACTCTTAAATTTACTCCCTCCCCACCCAGAACCCAGATGGGGTGGAGGGG-CCACCGGGGCAGGGAGGGGGCGGCAAGGGGGGAATGGGAGTTGTCTCCCCTTCCTCCCACACCTGATCTGCTCTTGGCTGGTCCCAGAGCGGGGTGAGGGGGCTTATGCCCCCCCCTCCCCCAGTGTGTTGGGTGGGGTGGAATTGAGGTTAGGGTGAGGGGTTAGGGTCTAGGAGGGTGTGTATGTTAGGGAGGACAGACTAGGTGATCTGCCCTACCCGGACACACACAGCCCTCCTTGCCCCTCCCCTCTCTCTTCTTGGTCTCTACTCCCAGGGGGAGGGGGGAACTTACTCTAGGAAAAGCCATGTCTCTCTCCCCCAGGGTGGGGGGACCTGTGTTGGAGGAGGGGTGTTGGGGG-CCCCCTTCCATGACTCTGTCCCCCCCGGGGGAGGTAGGACAGGGCTGGGcttccctctcatcctcccccctccccaatctccctccacctccctccctcccgccagctccACAATTTTTCGGTGTTTCTCTGTACATAGCTCTCTGGCGGGATAGGGGAGGTAGGATGGATGGGGTTTAGGGTGGGTAGGTCATGGGAGGGGAGAAGCCCCTCCTTGGCACCCCCTCTTCCCTGACTGCTATCCCCTACCCAGCCCTGCCCCCT-CATCCTTTCTTGCGTTTGGTATTGAGACTCTTTCCAGACTTCACCCTTCTTTCTTTTGTATGAACAGTTCTCCTTCAGACCCATCCCCCTACACACATACACCCAGCCGGGGCCAAATTTATACTTATATAAAAGTTGTAAATATGTGAAATTTTATCCCTGTGCCCTTTCCCTACTTT----CCCAACCCCAGACCCTCCCCCTGGACCTCCTTTCCTCCTCTCTTTGGCTGTTGTAATTATCTGGGGTTTGTACTGTACATATTTGGGGGTGTGTGTGTGTGGGCTGGGGGCAACCCCTCTGTATAGAGCTTCCTGGCCCCCTCCCTCCCC-----CAGGCTTCCCTCCCCCTCCACCACCCTAAAGGTAGGAAGATGCTCTTCCTACTTGTTTTATTTTGTTTTCTCGTTCTCCCTCCCCACCTTGTCCCACCCCACTCCCAGCCTTCTCTGTCCTCCACCACTATCCCTTTTTCTCCACTCCCAGCCCCATTTCCTTTTTTTCTGGAGTGTGTGGTGAAACAGAAAAAT-CATGTTTAATAAACGGAGATTGTTCTTTTTTCGCTGTGCTGACTTTCCTAAGCTGGGACATTCAGACGTATCACCCTATTCAGTAGGGTGATAGGATCTGCTTTTTGAGAGGAAGCTGGCAGCCTGGGAG--AAACC--ATATCCCTGCATGATGCCACAGTCTCCTC-CAGAATAGCACTCTCCCACCCGGCCATAAGATGTATTCTGTTTCTGAGCAGGGGTTGTGACCTGGCTAAGCTTACCCAATCCAGCTCTCCCCTCTCCACTGCCCCACTTAACCCTATGAGTAGAGAGGCCAGGGAGCAGGAACACTATCTGACAAGGAATTCCAAGTATATATATCTACACACACTCACAACTATATTTAGTAATTACCTAGAAATAAGGTTGATTTAATGGCTGGTTAAAATGCTCCCGTACGGAATGGAGCAAAGAACTTG----GTCCCTGAACAAATCTGAGTtgcaatcccaggccggtcact----------------tgccagcctccgtttcctccga--ggaaactgagcagagcaacacctacctt-gtagggctgg-gggagggtacaaggtgatgtggacga-tgcctggcccacacaataG--------TTCATCTCGCCT-TCTCAGCACTTAGAAGGGAGCGGGCGCTACGTTTAATCATC------CGCAG-----------GGCTTAAGGGCCGCCCCCTCCTTCCAGGCTACCATCTCCCGAGGCCCAGCTCAGATTCCTCCG----------GGCGTCAG---------------------------ACACC--------------TCCCGCCGGCACCGCCTTC-TCGCCCGC-GCAGCCAATCAACGCGAGGCTCGTAGCCCTCCGCCCTCCGATTGGCTGGGGCTCTGGCACCGCCCCCCGCACCTGGCGTTGGCGTCCGGCGCGAAGGCGGTGGCTTCCGGCCCGGGACTGAGCGGTGGCTGCCTGGGCGCCCCG-GCCCGGTGCCGCCGGTGTAGCCGCGGGGGCGTGGCGGCGGGAAGGGCCTCCCGGCTGG-------------CTGGTG----CGGCTCCCCGGGAGCCGGCC-CTCTGGGCGCCGTGAG-------------------CAGGAGCCGTCCGGGGCCGGCGAGGCCAGGCCGGGGCTGGAAGGATCTCCTCGTCTTCCTCCGCAGGCCCTGGAAGT-GAAACCCCGGTTGGTCTTTTGTTGTGGTGTTT-----------TAGTTTTTCTTTTCTTGGTGGGGGAGTGTGCGGGCCTGATCTGCGGGAACCACCACTCACTGGAAAGTTTCCACTT--TGCCGGGTTGGGGAGGCGGGTGTT------------GTTGCCCTTACCCAGAGCTTCTGTGACCCGCGTGCCTTTCCTCCGCAGCCTTCGTCCCGCG-GGGGTGCGCCCCCAGCCCCTCATCTCCAGTGTTCCGCCCTCTGGGATTTCTCTCTCTGAGGAGGCCATATGGATCTCTCGACGCCTTTGCCCCCCGTACCCTGCTCCCCGACCCGCAACCCAGCCCCACGGACAATCCAGATCGAGTTCCCACAGCATAGCTCGGTGCTGCTGGAAGCCCTGAACCGCCACAGGCTAGAGGGAAAGTTCTGTGATGTGTCCCTGTTGGTGCAGGGCCGGGAACTTAGAGCTCACAAGGCAGTGTTGGCTGCTGCCTCTCCCTACTTCCACGACAGACTTCTGCTGGGGGATGCGCCACGTCTCACTCTACCCAGCGTCATTGAAGCCGATGCCTTCGAGGGGCTGCTCCAGCTCATTTATTCAGGACGCCTCCGTCTGCCTCTGGATGCTCTGCCTGCCCACCTCCTTGTGGCCAGTGGCCTCCAGATGTGGCAAGTAGTAGATCAGTGCTCAGAGATTCTTAGAGAACTAGAAATCTCA---GGTGGAATTTCAACCTGTGGGGCGACGTCTTACCACACTTTTCTTTCAACCACATCCTCTCCAGGAGGCTGGTGCATTCGCTCTTCCTCTTTCCAGGCCCCAGTGCAGTCTTC---------------CTCCACCTCTAGGGAGAACTCTGTTTTAGGGGAGGGGAGTGAACTGGGAGATGTGTTACAGATTAAAGTTGAGGAAGAAGAGGAG---------------------GAGGACCAGGGGTCAGCAGCCCCTTCTCAGACACCTCAGCCTCAGAGGGTATCAGGAGGGTTTCCCTGCCCTCATGGATCCCACCCACTGCCTGTATCCACTACATATTGTAGGGTTCC---TTGCGAGAGTGCCCCACTTGAGCCTCCTGCCCTTCATACTGCACCACCCCCCAAAGTCTTCTACATTAAGCAGGAACCCTCTGAGCCTGAAGAAGAGATACCAGGGGGTGGAACTCAGTCTGGAGGAGCAAAGGAGGAGACCAAAGTGTTTTCTGGAGGGGACACCAAAGGGAATGGAGAACTAGGGTTCTTGTTACCCTTAGGAGCAGGGGCAACATATGGAGGAGGAGGAGGTCCATCCTGGAAACCAGTTGATCTTCATGGGAATGAAATCTTGTCAGGGGGTGGGTGGCCTGGAGGGGGAGGACAGGCTGTGCATGGGCCTGTGAAGTTAGGAGGTATACCCCCTGAAGATGGAAAACGCTTTGGTTGCTTGTGTGGAAAGCGGTTTGCAGTGAAGCCAAAGCGTGACAGGCATATCATGCTGACCTTCAGCCTTCGGCCCTTTAGCTGTGGCATCTGCAATAAGCGCTTCAAGCTGAAGCACCATCTGACAGAGCATATGAAGACTCATGCTGGAGCCCTGCATGCCTGCCCCCATTGTGGCCGTCGGTTTCGGGTACATGCCTGTTTCCTTCGCCATCGGGACCTATGCAAAGGCCAAGGGCTGGGCCACTGCTCACTGGACTTACAACTGACTGCCAAGGGCATACACGAACTTCTAGGATAAGAGAGCCACTGCTGCTGATGGATACTTTTTCATCACCACCATCACACCCTGCTCCTGGATCTTGTAATCATGCCAAGAAAATAGATATATTCCAGACATCTGGTTCTTAAGTGTGGA--TGTCAACCTGGCAGATTCTGGGATCTCAGATTTCTTAT---AACCAAGTTTTTTGCTAACC-ACCCCATAGGAGGGTGGTTTACAGG----GCATATGTAAATTGATCACTTGCCCCATAACAGACCTTT----------------CGTGCAGGAAACCAGATTTCGGATTAGAAGTTTGGTGAGAGAAAAGTTAGAACAAAAGATGTAATGATAAACATTTCACTTGGTCTCCATGAGGTGTTGAAGGAGCTGGTCTCTATTCTAGGGAT--GTCTGATTCTAGGGTCCAGTAATTCAGAAACCAATTAAGGTCTATGCTCTCCTCTCCCTTGTCATTGCTGAAATGATTTAGGTAGAGTTCTTTTTATGTACTTTCTTTTGTTCGATCTTTCCAGAAGCCTCTCAGATCATAACTCATTCT-----------GCACCTTCCCAACACTTCTTTTATTAACATTGTAGTTGAGCACTTTAACAAATTGAGCGTTCCATGTGTCA---TTAGAACTCTCTTTTTAATAGAGGATATCCCCTAAATAGCCTGTGCCTCTTGTTTACCTTTGTCCACCACTGATCACCCATATATTGATCACGGTGATTAGAATATGACCAAAGAACTCAGGAGATGGCCACTGACCTAAAATGCTCTCAGGGTAGCACCACTG-TTTTTGAACAAGTGGCTGTTGTCAGAGA---------CTGAGACAGCACATACAGGAAAGGCTGAAGAGTAAC-TGCACAGTAGGACCATACC----CCTTATCCATCCCACTTACACATGATAGG-----CCCTTGTTTGAGAGAGATAGAAGAG-TAGATATTGGAAT----GGGGAGACTGTCACAGGTTACTTAATTTCTTCAAATAAACTTTGCCCTGAAATTTAAACTGACAGTGGATTGGATTGAGTAATTTACGTGGGAGAGACAGCACGAAAGCAGAGTTGCAAAGACTTGGATATGTTACTTATGCAGCAGGGTTATATTGATGAGGGGAAAATGGGATGGTTTCACAc------------tggtgcagagaacactgtcctggacttcagtgggccagattctaggccctgacttgccactgaatgatctcaggtaagttaccttatc a score=2370 s hg19.chr6_ssto_hap7 4906090 78 + 4928567 TTTTAAAATCTGAACTA-----------GTACTTTTTTTGGTAGAGTGGTGTGGAACACCTAACTGGTTCTGT----TTTCCTTTTTAAAAGA s canFam2.chr12 5870105 93 + 75515492 tttcagagTGTGAACtgtttttgtttttgtttttgtttttgtGGGGTAGTATGCATCTCCTAATTGGTTCTCTGTCGTCTTATTTTTAAAGGG a score=21863 s hg19.chr6_ssto_hap7 4906619 620 + 4928567 TGGTTCACATGATCTT----TATAATATTCCCCAACTTCCTGTGTTCTCT---GTGTTTGGT-------TGG-TTGTTCTACAAACATTCAGTGCAAAGCACTATGCTAGACCCTGATTAATACACTGCCCTTAAAGGGTTCACAGGTATTACCAAAGATAGACAAGCCATTACAACGTGATAGGATAAGTTGATGATAGTGGGCAGTACAAACCACTTGAATGGCACAAAGAAAGCTAAGTAAAGACCTTCTCTAGGTCAGCAGAGGTTTCACAAACACAGCTTCCATGTGCCACAGTGTGGTCATGGGTGTGGGTGGCTGAACTGACACGGAGATGGTAAACAGAGGAGTCGAACTGAGAAGTATAGGGCCAGGGGTGATAGCCTTCCCCAAAGTTTGTTTC-TGAAAGTTATGAGGTATGGCACTCAGAAGGGTCTGAAAAATGTGAC--TGTGGCTAAGAAGGTAAATTCTAGCTGGGATTTGACAGCGTCTCAAAAGAGCCATGCCATGATCCCATCCCCATGA-TAAGGACTGTGAACTTATTGGGAAAGGGGATGAAGAGGGGTCAACCTGTCTTGGATCTGCTATAATCCCATCCATCAGCTATTCTTGACACATATTCTATGGGTGGCTA s canFam2.chr12 5870200 573 + 75515492 TGGTTCATATGATCTTTACCTATAATCTTCCCTGACTTCATGTATTACATATAATGTTTGGTGGTTGTATGGTTTGTTCTACAAACATTTAGTGCAATGCAGTATGCTAGACCCT--TT--TACTCTGACCTCAAAAAGTTCACAGCTACTTTCAAAGCTAGACAAATAATAACACTGTGGTATGATAAGTTCATATTAGTGGGCAGTACAGGCTAATGTAATGGCATAAGTGAAGTCAAGAGAAGGTCTCATACA--TCAGCAGAGGTTTCACAAAGATCTCTT---TATACCA----GAGATAAT-AATATGGGTGGCTGAAC----------ATG------AGTGAACTTGAAGTTATAA--CTAGGGCCAAGATTGATAGCTTTCCCCAAAGCATTTTCCTTAAAAGTT----GGTATGGGACCCAGAACAGGCTGAAAAATGTGACTTTATGGCTGAGGAGGTGAATTCTAGCT--------------TCTGTAAAGAGCCATGCCATGGTACCATCCTCATGGTTAAGGACTGTGAACATATTGGGAAGGGAGTCAGGGAGAGGGCTACC----------------AAATGCCACCTACCTGTCATTCTTTTGACACATTCAGTAGGTGGCTA a score=7489 s hg19.chr6_ssto_hap7 4907239 236 + 4928567 TATCCattggccaagatcctttggcttcaagcactggaagctggctctggctaacctcaccagacaaggaatttatggcaggatgtggggtggctcttggaattcaaagaagggccaaaggaccagCCATCAGAAGGATAAGACCTGGGTCAGCGTTGGGGGTCCATGGCGCAGGA--ACTCCAAGGCA------------TACAGTTTGGGATGATGA----------------------------------CTCATTCTTGTTTCTTGTGTCACTCATCTCA s canFam2.chr12 5871352 268 + 75515492 TATCCATTGAGCAAGATCCTTTGGTTGCAAGCAAGAAAAGCTGGCCTTG----ACCTTCCCAAAACAGG-ATCTATGGAAGTATGTGAAATGGCTCCTGAATTGGAAGGAAGGGCTGAAGGACCAGCCTTTGGAAGGATA-----------AGCTTGAGGGGTCCAGGGAGAAGGATTGCTCCTGGGGAATCTTTTCAGGTCATGTTTTGGGATGACAGTCattcttatttcttttttattttttatttttttttcattcttatttCTTTTGTTACTTAAGTCA a score=15167 s hg19.chr6_ssto_hap7 4907518 411 + 4928567 CCTCTGGTCAGAGCACCTTG-ATCATATAGTCCATCAAG-ATGGCAACAAAGTGGGCATGGAATCCTCAA-AAGCAATCGAAGTCCTAGGACAGAAGA---GAATGGGT----------TCTGGCCAGCCCACAGCAACAGAGACACACACCGGACGATCTCCATATGTTACACATTTTGGGATCC-CAAAGCCTCAGGTATACTTGCTACTTAGTGGGTGTTCAAGATACGCTGAAGCTGCCCAACTTCCACCTCTGCCCGCTGGACTTAAGGCAGAATTGTTTCTTCCCTCTCCTTAATCCCCATGACACTTTGTCCTTACTTGTATCAAAGCAATTAAAATAGCTTGTTAGAGTTTTTCTTCTTTT-----GTTTTTAGGTATTATACAGAAAACAAGTGCTGAAATTAAAGATT----TTGGTTTAAACAAAT s canFam2.chr12 5871756 382 + 75515492 CCTCTGGCCAGAGGACCCTGAATCATATGTTCCATCCATCAAGGCAACAAAGTGGGCATGTAATCCTCAAGGGGAAATTGAAGTCCTGGGATAGAAGAGGGGAATGGGGAATAATGCTAGCCAGCCAGCCCACAGGAACAGAGGTGCACTC----CAATCTCCACATGTTGCCCATCTTGGGATCCTTAAAGCCTCAGATATACT---------------------------------------------------CGCCCTCTGAACTTAAGGCAGAATTGCTTCTTTCCTCTCCTTAGTCTCTGTAATACTTTTTTTATTACTGCTGTAAGTCAATTAAAATACCATGTTAGAGTTTTGTTTTTGTTTTGAAGTTATTAGGAATTATACAGAAAACAAATTCCTTAATGAAAGATCTGGATTGATTGAAACTGAt a score=12406 s hg19.chr6_ssto_hap7 4907937 321 + 4928567 TACCTCTCTGCCTCTGTCCTTCAGAAGATGCAGTGGAGGAGATGTCCAATCTAGTGTCAAAGGATAGCCCCATTCCCAGAGCCTTTGCTCTTTTAATTATCACTTCTCTCCTTTATCTTTCCCCTCTCTGTCTCTGTAGTTCATTACAT----TTAACCATGctcacagggtagtgagaattaattaatacatgtaaaatacttagaaccatgccttgcatgcagtagtcactcaataagtgttagctgttatCATGAGTGAGACCAGTAGTCATCGGTTCCCCACC---------CCTTTACTGCGATCAGTTCTCCCAGAGAGAGATCACAC s canFam2.chr12 5873309 311 + 75515492 TACCTCTCTACCTCTGTCCTCTCCTTCTTATAATGGAAGAGGTGTCCCTCCTACTGACCAAGGCTAATCCCCTTCCCAAAACCCTTGCTCGTTTAATTACCCCATCTGTTCATCATTTTCA----------CTCTGGAGTTCCTCATTTGTCCTTACTCATGCTCACaggtttgtaag----aattaatacatgtaaaatgctgaggacagtaccttgccctcagtaa--acttgataaatgttagctgttattATGAGGGAGACCATTA-------GTTCCCCACTAATGGGGAACCTTTACTGGGATCAGTGATCTCAGGGAGGGGTCAAAT a score=5051 s hg19.chr6_ssto_hap7 4909143 332 + 4928567 AGATAGGGGGAAATAAGAGCTATCAGAGCACATAGCAGAGGTCTTAGCCTGGCCTAATAATTGGGAGATTTCTAGATGAAATGGAAAAATTTCTAGTGAAGGGGCAAAATATTTTCAACAAAATTGGAAATGAGGCACATAGTACTTAGTAAGGATTACATGTTGTCATTATCATTACCCATCTCATACATGCTACAGTTCTTCAGGGCCCTTTATGCCCTCTTCCAAATTTACACACTCCGGGGTGATTTTTTTTCCCCACGCAGAACTCATGTTAAAAttcctgggtgactttatccactcttctgagttgaaccatttaaatagtgatg s canFam2.chr12 5873620 172 + 75515492 ATATAAGGGG------------------------------------------------------------------------------------------------AAATATTTTCAGCTAAGGGGGAAATGAGGCA-----TACTCAAT-----------------GTCATTATTACCTTTCTCAtaaatactagagttcttcaggggtctttgcaccctcttctaactttatatattcctgggtgatt------------------------------------------tttatccactcttctgagttaaaccatttaaatactgatg a score=30461 s hg19.chr6_ssto_hap7 4909808 798 + 4928567 ACCTTTAATTTTATACCTCTAGTTTTACTGGGCCCCAAACCCACTTGGATTTTTTCCTTCTTTCCTTTCTTTTTCAACAAGTGCCTGCTG---------------------------------------------------------------------------------TATACCAGACACTGAAGAAAAAAGCAGAAGGCATCATAGGGG--------------CTTGGACT-----------CTGGATGATCTCTTTAAGAGACGAGACGTTTAAACCAGCCATAT----------------------------------------------------------GCTGta-------gacatctcaagctcaacatgtctaaaatactccaccccacctctagccagctctcctctgttgtttccaggtttggtaatggttccatcatcaacccaaatgcccaaggttgaaacctgggagggttccttgccagcagctctctcacctcccatacctgtcctaccaaagctatctcctaaatatttcacattgatgcactcctta---cccacttctgccactgctacctcctaactggtt---ctttgtctcctgtcttgcttccctccatatttca-ccctatgcactatgaccagagtaatctttctaaagcaaaaattaatgtttcacca-ctctccagcttaaacctttcattggcttcctcttgctcTTTCATGAGGTCCAAGTGATCTGGTCCCAGttactggtccc--------------------aggcctttgctt-----------ttgctgcttctcatgctcat--ctctacctagtatagtttcc---------------cgtcagtggaataatttctg--ctcttcagatattagtttaaacattacttcatctagaaatcttgaccatggggccagggtaggacctctgctatgtgctctgatagcTCTTAATTCCCCAT-----ATTTTTC----AATTTCCTTTATTCAATAAG s canFam2.chr12 5873792 1024 + 75515492 acccttaattttatatctccatttttcccgacccccagattcACTTAGA---TTTCCTCCTTTCCTTCCTTCAACAATAGG-GCCAGCTggggcgcctgggtggttcagctggttcagcttctgactcttgatttcacctcaagtctccatctcagttgtgagttcaagccTACTTTaaacaaaacaaaacaaaacaaaaaaaaacCCAATGAAGCCTGCTGTGTACCTGGCACTGATGAGAAGAGCAGGATTATCACTTGAAGAGAC-AGATGTTTAAACCAGGTATGTCtaaataaataaataaataaataaataaataaataaataaataaacaaaCCAGGTATGTCTGTACTTCatgggcctctcaagctcaatttgtctaaaatactgtatcccacctctagccag--ctgctctgttgtttcgaggtttagtaaaagttccactatccacccaaatgcccaagactaaaggctgggagtattcctgg---gcccctgtctcacatcccatactggccctatcaatgctatctcctaaatatttcaaattgatacgttctttcattcccaatactgctactgcaccctcctaactgtttttgtttttttttttgtcttgcttccctttgtgtctcattcccacacactatggccagagtgatctttctaaagcataaagtactgtttcactagctttccagcttaaacctttcatttgctcccTCCTGCTCTTTGATGAAGTCCAAG-GATCTGCTCCCAATTGTTGCACTCTTGCCACTCATGTTTTCCTTAGGCCTCTgcttttttttttttctttttgctcctcatgcttatcactctgcctagaatagttacctaccctggaaataatctttagtgggctaattcttactctcttcagatatcaactgaagcatcacttcctttagaaatc-tgaccattaggccaaagtgggacctctgctgtgtactctaatagctcttattttgcTGTCATAGAATTTTCTTGGCATttcctttactcagtaag a score=2679 s hg19.chr6_ssto_hap7 4910812 55 + 4928567 TACTTGCCAACTACCTACTGTTACTCATGTGTGGGCACTGCTCTAGGCACAATGA s canFam2.chr12 5874816 51 + 75515492 tatttgtcaactatccactgtt----atatgtgggtgctgttttaggcatggtgg a score=10540 s hg19.chr6_ssto_hap7 4911331 273 + 4928567 GCAGTGCCTATTCTCATAAGCTTACACTCCAGTGCTGTAAATGAAATAAACTAGG---TAAGGAGGAGAGTAACAGAAAAGGAGGGCATACTGTATACATTAATCTAATATTCAAGGGGGAAATAAAGGCCCAGACATGCAAA--GAAAAAGGAGAAGATGGTTTACTGAAGTGTTTAACAGATGCCCAAGCCAAGAAAGAGAAAAAGAATGGTTTGCTTaacaaggagaccagtggacctagagctacagggaaagagagaaaagatgtggttgaag s canFam2.chr12 5874867 259 + 75515492 acagttcttaccctcataagattacattccagtgctgtaaggaaaataaatcaagtaaTAAGGTGGAGGATAACAGAAAAGGAAGGCATGCTGTACACATTGATTTAGTATCCAAAGGAGAAG-AAAGACCCAGACTTACAAAGTGGGACAGGGGAGAAGGTTCCAATACAGTATGTAGCAAATGCAAAGGCCAAGAAAGAAAATGAGGCAGGTGTG--TGACAA----ACCAATGGACTTGG------------AGAGGAATGAGATGTtgtcttag a score=4406 s hg19.chr6_ssto_hap7 4911791 259 + 4928567 ccaatcagaccatttta--gcagt---------gcagacaagagatgggtaaaggcagcagataggcagaggactagatgaa-------ttaa--------------------agctactg--------------tatttgggggc------------------------------------agaactgacagga----------------------------------------------tattct--------gttggattaatacag-----------------------agactgtgggaaagtaaaaaaaaaatcaaaaaagatctgtaaagttttggcttgaggaattgaattagaggtcatttaatgagtggaagacaggaataaaagaacttgggaatggatcaagagttttgtat s canFam2.chr12 5875517 416 + 75515492 cctttcagatcatgttaaggcatttgggtttcatctgaaatgcaatggg--aaggcaataaagagcttaaagtagagaggaatgatcttttaacattttaaagagattcctctagctacagagggaatattggatcatttggaggcaagagtggaaacagagacaaatcagactatttcagtagtacagacaagaggtggataaaagcagcagatatggagagaagtaaacggattaaagctattataattggaggtagggctaacacaggacgttctaacagattaatatagagattgtgggaaaat-----aaaaatcaaggaagaccaccagaattttggcttgagtaattgaattagaggccatttactgagtggaagacagaagtagaagaacctgggag-ggatcaagggttTTATCT a score=8532 s hg19.chr6_ssto_hap7 4912347 185 + 4928567 aaatcattataagctatccaagATGTATTTATCAGGTGTTCTTCTAGATTGgaggttggcaaactcattctatgaaggatcaaatagtaaagtttaggctttgcatgccaagaaacaaaattaaggatattatataagtactttaaaaataaaacaa--atttgcataaattgtcattgacaaattt s canFam2.chr12 5875933 182 + 75515492 GAATGGCTAGAAGCAG--CTGGCTGTACTTGTCCAGTGCTCTTCTACACcaggggttggcaaacttatgctataaaggatcaaatagtaa---ttaggctttgcatgccaaaaagtaaaatcaaggatataacataagtacataaaaattaaagaaaacatttccacaatttattaatgacagaact a score=6393 s hg19.chr6_ssto_hap7 4912691 108 + 4928567 caaaataaaaaataataataattgaatgcaatttttttgtaatacagatttgctgattaattggggttcaaatttagtgttccccatcatcaaagtcaattgcaaatg s canFam2.chr12 5876115 100 + 75515492 caaagt--------ataatgattgagtacaattttttggtaatagaggtttgctgcttaattgaggtacaaagttagtattccctgtcatcaaaatcaattgcaaatg a score=8901 s hg19.chr6_ssto_hap7 4913114 162 + 4928567 ttcatctgttaatgctgatctacaatgagattttacatattttgtctttgaaaatgtcttt-acaaaggcaggtattgccaaatactgatatcaatccaagaccatctggttttgattgggtatattcattacttggaaggc-tttatataattttattatatg s canFam2.chr12 5876215 163 + 75515492 ttcatttgttagtgtcgatctgtaatgagattttacatatttcgtctttgaatatgtctttcacacagata-gtactgccaaatgctgatattaatccaatagtgtgtaattttaattgagcatattcatcacctgagagacatttatagaattcttttatatt a score=6487 s hg19.chr6_ssto_hap7 4915565 107 + 4928567 cttttcttgatctttgccttttagcatgtcattacattgtaggttaatcacctccaattgaaggttaggtagaagttcctcaattgcacagttaaatgaaatataga s canFam2.chr12 5876378 102 + 75515492 ctttccttgatatttgccttttaccatgttattacattgtggattaatcacatcaaaatga-----aggaggaaactcctcaactgcacaattaagtgaaatataga a score=10274 s hg19.chr6_ssto_hap7 4915982 249 + 4928567 aaatttccttgcacttgcactgaggaccaaaaaac-ctgctagaactgtagtttgagctcagaaaatataactgctgcaaattttgtatgggaatgga--------------------gattttggttcttgttttagcttttgatg--acaggaaatatgtaaagtagcttaaccttacctgtgattcaaacaactttaataaatttactgtagtataagtttcaca-ataagcacctttttaccttgtaattttagattaaattcatcaag s canFam2.chr12 5876480 269 + 75515492 aattttctttccacttgcattgagatttgaaaaacactgctggaactttagttcaagctcagaaaatatatatgcttcaaa-tccatgagggaatggggatcttgcttttttttttttgatcttgctttttgttttaacttttgatagcacaggaagtgtatacagccccttgacattacctgagattc--attac-ctgatgactttgctgcagtatatgtttcctatattatcactgctttgccttgtaattttagattaaattcagtagg a score=8063 s hg19.chr6_ssto_hap7 4919547 182 + 4928567 Aagatctaattatcaatttacagaaaatgacgcagagggcagggaaacacattaaatcacaccaaagtggtacaatcaacaaaatcgagactgtaagaaactctaaaggacaaacaacca--tttcttcacacacacacaaaaaattgcaagggaaaaaagagat-ggattggaacctatagttt s canFam2.chr12 5878232 173 + 75515492 aaaatataactaccaattcacagaaaatg---caggggacagggaaacatgtcaaaccacaccacagcgaggtaatcagcaaaac--agactgcaagaaattctaaggaacaaacactccattttcttcac-------caaaaaatttcaaagggacaaagggaaaggagggaaatctgtagttt a score=945 s hg19.chr6_ssto_hap7 4919729 22 + 4928567 aaaagagtttaaaagaGGCCTG s canFam2.chr12 5878534 22 + 75515492 aaaagattttaaaagacatatt a score=4509 s hg19.chr6_ssto_hap7 4919954 136 + 4928567 cacattaaccaatcataatatgtggaccttacttggatcatagt-----------gttaaaaaaaaatggtcttgatctctttttaacatgacatttatgagacaactgtagactcaaccac-tgactgaacatttgatgatattagg s canFam2.chr12 5878773 143 + 75515492 CATAATAGCCAGCCAGAGTGTTCAGACCTTATTTGGATCATAGTTTATTTAAAAGATTAAAAAAAAAAGCGAGAGAGACAATTCT-----GGCCCTTATGAGATAACTGGGGACTCAACTAAGTGACTGGACACTTGCTAATATTAGG a score=1523 s hg19.chr6_ssto_hap7 4920425 26 + 4928567 AGTTACTCTTAAAAATTTCAGTTGTT s canFam2.chr12 5878916 26 + 75515492 AGTTACTGTTAAAGTTTTTAGTTGTg a score=3757 s hg19.chr6_ssto_hap7 4921201 66 + 4928567 CTTGTCTTTTGACGGCATTGGCTATTTATAGATAATAAAAA--ATTCATGGTTATGGGTTGAATAAAA s canFam2.chr12 5879199 68 + 75515492 CTTGTCTTTGGATGGTATTTGTTATTTATGGGTAAATAAATTTATTCATAGTTATGGATTGAATAAAA a score=3445 s hg19.chr6_ssto_hap7 4921267 68 + 4928567 TGTTAAATGCATACATATACATGCTCTAGATAAGTGTATAAATTAA-----AATTTGTGTA--TATAGTCAATGT s canFam2.chr12 5879449 75 + 75515492 TATCAAATATACACATACATAAGTACTAGATAATTGTATAAATTAAACTATAATTTGTGTATTTATAGTCAATTT a score=6142 s hg19.chr6_ssto_hap7 4924813 90 + 4928567 gcatttattttgctctttcagtaaaaatttattttaggataaccaaatagccctagttgatgaataaagccttcacagaattctagttaa s canFam2.chr12 5879795 90 + 75515492 gcatgtattttgcttttccagtaaaagtttattttaggataactgaatagttctagttaataaagagaattttcacagaatgctagttaa a score=4310 s hg19.chr6_ssto_hap7 4925256 108 + 4928567 ACATctagttaatacatgtgaatgaaataaaagaa--------atataattttacaaactccaataaattcgtgattcaggtaaggattatcatttggcattgaaaacaatagatg s canFam2.chr12 5879885 102 + 75515492 aca------------atgtaaaagaaataaaagaattagaaaaacataatttcatgaactccaacagaac--tgactcaggcaaggattatcgattggtgttaaaaccaatagatg a score=16173 s hg19.chr6_ssto_hap7 4925364 331 + 4928567 attgattgttgtagacattcatataggaccaaagtaacaccacacagattactt-ctagtcccaaaaggaaaa-cattaactataaatggagtgatcagaatgtcaccacc---ctaatctaggtaggggtcaactttagcataactaatggtcgatcatatttgccttctaatggaatataacctaaaatacacatcaatatGGTGACTGTATGACTTCATCCTTTCTAATATCTCGAATCCTAGTTcagacatccctcagaaattct-----aatccattcctaaaaacacgctggatagtgaattttc-gatagtgggagtctgtatgtcattatttta s canFam2.chr12 5880180 332 + 75515492 attggtaattgtaaacatgcatgcagagtcaaagtaataccatgtggattactttctagtctcaaaagggaaagcattaactgtaaatcgagggatcat----tcaccactaatttaatctagg---ggttcaatctcagcatcactaatgattaatcataggtgtcttctaatgggatgcaGCATTAACTATACAATAATATA---ACTATATGACTTTATTCTTCCTAGTATATTTTATCCTAGTTCTGGTATCCCTCAGAAGATCTTTAAGAATCCATTCCTAAAAATATGTTGGATAGTGAATTTTTAGGTAGTGGGAGTCTGTAACTCATTATTCTA a score=23615 s hg19.chr6_ssto_hap7 4925700 642 + 4928567 gaaaaaaatgataatgtattcccagcacatctaaaaaccccaaccattttctatatatacgta---------------tatatataa----------gatttttctgcttaatataaagcctttaaaacaccaatagcataattgtttaacactaaattaactca-ttagtttatttgtgtagtaaca--agatacaaattatgttttcctttaa-----------ctgcaacaaatgtgaacagtgaaataatgtgtgaaagacacATAATGAAGGTAAATAACACTTAGCAATAATAAAATGAA----GCAAGTTTTTTGACTTGCTTTTAAAAGCAAGTTGGTTAGTGAAGAGTGAAGTG-------AGTGAGGTTTAGAGATGAGAAGGGATATGTAGATATGGAGGCTGTGGTCCCTGTTGCTGTT-AGCGGAAG-ATAAAAGCGAACAA-AATGAGCTGTGGAAGGAGTGAGTGAAACAGTGAATGCCTGGGGTTCATCCATATTCAGATCCAAGAAGCTGACGGACAGTCTGTTTTTCTTT--CTTGGCAATGGAGTCTTCAGAAGTGGATGATTGTTAATTATCTTCTGAAAGTATTGACAAAGCATCACAAGAAACTCAAAATGGACAAGTGTCCCATTCCTTTTGCTTGTGTCATGCAGCTTCTGATAACCCTAGACTGTGCCATAA s canFam2.chr12 5880994 619 + 75515492 GAAAAAAATAATACTGTATTTCCAGCAGGTCTAAAAACCCCAACCAATTTCCCTCAGTGCTTAAAACACTCTTAAAAATCTATATAACAATCAACTAGGTTTCTCTGC------------CTTTAAAACACCAGTTACTTAATT----AACACTTAATTAACTCAATGAGTTTATTTGTGCAATAACATAGGATAC---TGATGTTTTCCTCTTAAACAATTGTTACTGTAATGTAAGTGAACAGTGAAATGATATGTTCAA------------AGGCAAATAACACTCAGCAGCAGTGAAATAAACAAGGCAAGTTTTT------------AAATG-----TGGTTACTGAA-ATTGCAGTGTCCCTTAAGTGAGGTT-GGAGATGAGAAGGGA------GATATGGAAGTTGTAGTCACTGTTGCTGTTTAGTGGGGGGATGAAGGTGAACAAGAATGAGCTTGAGCAGGAGTGA----AACAGTAAATGTCTGAGGTTCATCCAT---------------GCCGGTGGATAATTAGCTTACCTGAGACTCAGCAATG-AGTCT-CAGAAGTGGATGGTCATGAATTGTCTTCTGAAAGTATTGACAAAGCACGACAAGAAACTAAAAATGGACAA-TATTACATTCCGTTTGCTTGTGTTATGCAGCTTTTGATAACCATAGACTGTGCTGGAA a score=2246 s hg19.chr6_ssto_hap7 4926342 34 + 4928567 TGCATTTTTGAATGTGATTTTTGTCCTCTTGCTG s canFam2.chr12 5881821 34 + 75515492 TGCATTTTTGGATGTGATTTTTCTGCTCTTGTCA a score=3129 s hg19.chr6_ssto_hap7 4926699 48 + 4928567 TGATCATAATCTCTTATAAGCAAACAGCGATCATTCTGTCTTCATGAT s canFam2.chr12 5881855 47 + 75515492 TGATCATGATCTCTTATAAGC-AACAGTGATGATTCTGTCTCTATAAT a score=1861 s hg19.chr6_ssto_hap7 4926747 26 + 4928567 TAAAATTTCCTTTAAAAATTTGTCGT s canFam2.chr12 5882028 26 + 75515492 TAAAATTTCCTTTAAATATTTGTCAg a score=3967 s hg19.chr6_ssto_hap7 4926793 68 + 4928567 tattagtttgctagggctgtcataacaaaatgccccagactgtgggtcttaaacagcagagatttatt s canFam2.chr12 5882253 68 + 75515492 tattagtcttctagggctgccattacaaaataccacagactgtgtgggttaaatgacagatatttctt a score=6622 s hg19.chr6_ssto_hap7 4926861 154 + 4928567 ttcccacagtcctggaggccggacgttcagtattgaggtcccagcaggtttggcttcttctgaggtctctctccttggcttgttgactgcc----ttttcactgtgtcttctcatggtctttccccagtgtgtgcacatcactggtgtcttttattct s canFam2.chr12 5882522 152 + 75515492 ttctcacagttctggagactagaaattcaagatcaagatgccagcaggtttggtttttcctgaggcctttctcctcagcttgcagtctgccaccattcttactg----gtcacatggtcttt-cttagtgcacgggcactcctggtgtc-tctattct a score=1187 s hg19.chr6_ssto_hap7 4927323 58 + 4928567 gactccggttctattgcattagggtctgtctcatccttatgtcctcatttaa------------cctgag s canFam2.chr12 5882674 66 + 75515492 gataccagtcatattgggttagg----ctttcactcttatgaccttatttacctttaattacctctttag a score=15249 s hg19.chr6_ssto_hap7 4927381 371 + 4928567 tcacctttttaaaggttgtacctctaaaatcagtcacattgagggtgagggcttcaatataaaaatttgagagggtcgagggacacagttccatccataacTCTCCTCTTCCTCCAGCTTAGCTCCTTCCAGCATTATTCCTTCTAAATCAATGCATTTTTTGAAAGGAACACAGTAAGCTAGAAGGTGGTGATGATTGCACAGCTTTCCAGATCCACAATTATTTTAATAATTTGTCTTTATTTTCTCACACGCAGAAAATAAGGTATGCACAGGAGATGGAACATGTGCATGGCCAAG----TATATATCTTTTTATGCCTTCACCTCCTAATATAATTTATCTTTTCCAATATACATGATTCTTTAGTGTTT s canFam2.chr12 5882966 342 + 75515492 ttacctctttaaaagccttatctccaaatacagtgacattgagcatcagggcgtcaa-atacaaaattgcgggggaggggggacacaattcggttggtaataCTGCTCTTCCTCCAACTTAGCTCCTCCCAG-ATTATTACCTCCAGTGGAATGTGTTTCTTGGAAGGAGCATGGTAA--------------------------CTCTCCGGAATGAACAAAACTTTAATCATTTGTGTTTGTTTTCTCTCATACAGGAAATAAGGTATTCCCTGGA-----AACACGTGCACGGCCATGCATATATATATTTTTTTATGCCTTCACCTCTTAGTACACTTTATCACTTCCAATATACATGTCTCTCTAGTCTTT a score=1853 s hg19.chr6_ssto_hap7 4927752 28 + 4928567 TCAGTTCACCTGCTTTCCTCACAGTGTT s canFam2.chr12 5883429 28 + 75515492 TTAAGTCACCTGCtttcttcacagtttt