0 chr6_hla_hap2 3578 5935 chr20 4671786 4673943 + 58847 TATTTTTTGTCCTTGCAGCCAAATGGACCAGATAATTTTTAACTCCATGTTT----GAGAAACATTTAATAATGCAATGTGTGGCACAAGGGGAGTACAGATGCACGGGAGGCAGGACAGTTTAGGTAAAGGGAAGCACAAAAGTTGA-AGATGAGGCA-CTGCCATCAAAGCTGTGAGGCTTCAGGCCAAGAACAGGAGCTAAGGAAGCCACAAGGGAGGACATTTTCTGCAGAGTTGCTGAACCAGTAACAACCTGGTCCTGACAAAGCTCT---TGTGGAAGAATAAGAGCCAAGTGGGAAAGCTTTTCA---TCTTGCAAAGCTGGGGCAGAAGGTTCTTCCTTGAATGTGGTCATCTGCACTTCAGCTCAAGAGTCCTGCAGAG-ACAGAGGAAA---TTGTTTTCAGACCTGGCTTTACTAAAACTTCTTTTCCCCGCTTTCAACGACTCAGATGAGAGCACTGCAGGGAGAAGAAAAACAAGTTCCTAAGTCTCCCTGAGCCAATGATCCTGCAAAGCACAGGCCTTTTCTAAGTGGAGAGGAGGAGTTCTGGGGTAAATTGCCTGATCAGAAATCTGGATCCAAAGTCTTTCCTATTATTTCTGTCT-CATGCCTTATCACCTCTGCCATCATTCTAGGGAAACTGAATCTCTTTCTGAAAGAGGATTAAAAGGTATTACCTGTTGGCTGAAGTCCAGAGTGTCCTGGGAAAAAGAGGAAAAGATATACACTTAAAAGATATGGAAGCAAATCTGTCTTCTAACACAATGTCCCAGCCCCAGATCTCCCACCTGAGATTTCTCTAACACCACAACCCACACCAACCAGGGCAGAGAGGAACAGAAACAGACCATGTGACCCATGAAGCATGAGGTGTCTGTCACAGGATCCAGCGTAATTGCATTAGCCTTAGTGGCTCTTCCTTAATTTGCTCCAGGATCTCCAACCAA----AGAATCCCTACTTGTTAACCTT----TCTCTTATCTCTGCAGGCCACAAGCTATTATGCTTTGACATAGTAACCAT-GCACTGATGATTTC-TGGATTATCAGGACATTGGAGGTCATTTGGGGAAAGAAAGGCTTTATCCAGGGCCACTGATATACTGAGAACTAACCCTAGCAAAGTCATAGTTCCTCCTCCAGAAAAGCCTATGGAGATTCAGCTCCCA-AAAGCTCCTCACCTTTCTGATTCCTGAAGTAGATGAACAGCCCTGTCCCAAGGAAGAGCAGGCCCAGCACAAAGCCCCCGACTCCACTCAGCATCTTGCTCTGTGCAGATTCAGACCGTGCACCTGAGAGAGGAAGCCA--GGTTTAG---TGTTTATTCCAAATTGAACCTCTGTAATTGAGACCC-TAAGATTCAGAGCTTTCAAAATGGGAAAGAAGGCTGCCCTGTAAGAACTAAAATAACTAGCCATTTCTGGG-----GGAAAAAACGGTTTTCAAA----TCACACTGTAACAGTTACAAGGTCCAGGCATCAAACTCATTTCAAATATTACAGCCTTGATGTAAGGCGCAACTTCAAAATCTGATCAACAgaaagcc--tgagtctcagtgaggttaagtagtttgtctagagtgacagagctaataaaaggcagagttgagattggactcccctcatgtcaggaaggcccctagagttctcctcttCTCACAACAAACAACTCAGATCAACAGCACCAGAAACGCAGTCTCAGACCCAGAGGCAGGGCCTGGAGCCTGGGGAGAGTGGGTGACCCTGAACTGGGACATCATGGGGAGGTTCAAAAGAGGGACAGCCTCTCCCGCCTG-GCAGGCGTGACTGATTCCCCAGGGGGTACAGGTGTTTCTAGAAACACCTACAGGGCTACCCCCAGTAGCCCAGTGACCTGTGCTGATGGAGATGAGAACATGGAGCAAATGAAAATAGGATGTGGGAGAGGAGAAACCTGACACTCAGGGATTAGCACAGTCCCCTTCTTGGTGGGTGAGAAATTTAGGAAGTCAGAAAGCTGC--TAACTCCATTGCACCGTGAGAGGGCTCATCATGCTTGGATGCTCCACTTGGCAGGTGTAAACCTCTCCACTCCGAGGAACTGTTTCCAGCATCACCAGGGTCTGGAAGGTCCAGTCTCCATTCTGGATCAGGCCTGTGGACACCACCCCAGCCTTCTCTTCCTGGCCGTTCCGGAACCACCTGACTTCAATGCTGCCTGGATAGAAACCATTCACAGAGCAGACCAGGAGGTTGTGGTGCTGCAGGGGCTGGGTCTTTGAAGGATACACAGTCACCTTAGGTTGGACTAGGAGAAAAAAAAGGTAGTGGGAATGAGTCATGAAGACAGAGTAAGTCTCCTTGTTTGGCTGTTTGTCTGCTTCTCTGCAAACCCAGGCT TATTTCTTCTGCTTGAAACTC--TGAAGCAGATGACTTTCA-TTCTTTGTTTATTTGAAAAAGATGTCAGAAAGCA---TATGACAACAGACTGACTCAGAAGCGCCAGGCAAAGGGCAAG--GGACAAAAGGGAGCAGGAGAGGTGAGAGAGGGGGCTTCTGTCCCCGGAGCTGCAAGGTCT--------GGCCAGGGGTTAAA-CAGCCACAAGG-AGCACAGAT-CTCCAGGGTGGA-GAATCAGGAGGAGCCAGGTCCTGGAAGAGCACTGTCTCTGGAGGAATGTAGGCCAAGCAGGACATGTTTTCAAGACATGGTGACAGTGGG--AGAACGC-CTTCCTTCAGCCTTGTCACCT-CACCTCAGTTCAGGAGTCCTGCAGAGCACAGGGGACAAGGGTGTTTCCAGACCTAACTCAGCAGTGGCCTCTCTGACC-ACCTCCAGCCTCTCC--TGACAGCATGGCAGTGATCAGAGAGG-AACTTCTCATG---CCCCAAGTCAATGCTGCTTCAGACCACAGGCCTTTAGTAAGTGCAGGGAGCAAGGCTCAGTGCAATCTGCCTGGCCAGACCCTGGGATCTTC-GTCTTCCTCGTT-TTTCTGCCTGTGTCCATCACCCCATCCCCCA-CACTGTAGGGAAAGCAGATATGTCTCTGAGAGAAGACTGAAGAGCATTACCTGTTGGCTGAAGTCCAGACTGTCCTAGAAAAGAGAGAATAAAATAGATGCTTACATG-TGTGGAGGCAGATCTGTCCCCAGACACATTCCCCCAGACTCTGAGCTGCCACATGAGATCCCTCTGGTAACAACACCCACAGCACACAGGACCAAGAGGAGCATGGGCAGAGAACGGAGTTCAGGGAGCTTCAGT---------------------------CACCAGCCC--ATAGCTCTTCCCCAGTCTTCCTCTGT-TCTCAGGCTCATGCCAGAATCACC-----TTAACTTTCACATGTGTTATTTCCTCAGGGTTCAATCAA---------------GTAACTACAGGACTGTTGCTTTCACAGTCCAT--GGAAACCTGAGGTCA-----------------------CAGGGCCAACAGCATCCTGAGAAC----------AAAGCCATGGCTCTTCCCT---GAAATGCTATGGAGTTGTGGCCCTCACAGGGCTCCTTACCTTTCTGGTTCCTGAAGTAGACGAACAGCCCGGCTCCCAGGAAGAGCAGACCCAGCACGATGCCCCCGACTCCACTCATCTTCTTATTTTGTGCAGACGTGGACTGTGCTTCTGAGAAGGGAAGCCAAAGGTTTGGAGAGGTTTAGCTCAAATGCCATGTCC--ACTAAGGACCCATGAGACTCAGGGCTTTGAGACCATGGAAGAAGTGTGTTCTAGAAGAGCTGGAAT---TGAACACTCCTGGTCATGTTGAGAAACCAAATATAAAGAGGCTCACACCATGA--------AGAGCC----------------TTAAATATGGCCGCCCTGAGCTGAGCTG-------------------AGAGGAAGCCACTGAG-CTCTGGGAG-----------------------------TAAGCAAAGGCAGAGTTGTGACTATGTGTCTCTGAGGTCAGCCATGACCCTGCACTACTCCTTGTCCATCGCCA------TCA--CCAACAGCAGCAGAAACACAACCC---AGCCAGAGGCAGAGGCTGCAGCCAGAGCCAAGAAGATT-CCAGGACCTGTGATGTCACTGGCAGGCTCAGATGAG---------------TCTGTGGGGGCATAACTGCTTCCC-AGGGGGCAAAAGTGCTTGTAGACGTGT-TGCACTCCTACCCT----------GTGAGCCATACAGAAAGACTGGACAGCACAAAACTAGT--AGATAGAGTGTGTGGGCGGAGAAAGCTGACAGGCAGGGCTAAGCCACGCCTCCTCCCTGGTGGGAGGGCA-TTCACAGAGTCTGGAAGTTACACTCACTCCACTCGACTCTGACAGGGCTGGTCAGGCTGGGATGCTCCACCTGGCAGGTATAAACCTCTCCACCTTGAGGAACCATCTCCAGCATCACCAACAACTGGAAGGTCCAGTCTCCATTTGGGATCAGGCCAGTGGACACGAGTCCATCCTTTTCTTCCTCGCCATTCCGGAACCATCTGACTTCAACGCTGCCAGGGTAGAAGTCACTCACAGAGCAGACCAGGAGGTTGTGGTGTTTCAGGGGCTGCGTCTTTGAAGGGTACACAGTCACCTTGGGTTCAACTAGAGGAGAAAGAGAG--GTGAGGAGGAGCCATGAGGGCAGA-CCTGTCTTCCCCGTGGGCTGCCTGCCTGCCTCCATCC--ACCCAGGCT 1 chr6_hla_hap2 6353 6405 chr20 4650396 4650448 + 3238 TCACTCCATTCCACTGTGAGGGGGCTCATCACACTTGGGTGCTCCACTTGGCA TCACTCCACTCCACTCTGACAGGGCTGGTCAGGCTGGGATGCTCCACCTGGCA 2 chr6_hla_hap2 8500 8870 chr20 4676989 4677370 + 16356 ctctcacacacacacacacacacacacatacacaGATTCCCCGCTCACAGGGACCCA---------GGCCCCGCCCTCCACC-------ATGCT----CACCTCGCCGCTGCACTGTGAAGCTCTCCACAACCCCGTAGTTGTATCTGCAGTAGGTGTCCACCTCGGCCCGCCTCCGCTCCAGGAGGTCCTTCTGGCTGTTCCAGTACTCAGCGTCAGGCCGCCCCAGCTCCGTCACCGCCTGGTACTCCCCCAGGTCACTGTTGTAGCGCGCGTACTCCTCTTGGTTATAGATGTATCTGATCAGGTTCCACACTCGCTCCGTCCCATTGAGGAAATGACACTCACACTTAGCCTGCTCCAAGAAACGTGCTGTGGGGACACGAACGATC CTCCTGCGCACACGCGCACCCCCGCCC---------TGCCCCGCCCTCCCAGTCCCACCTGGGCGTGGTTCCGCCCCTCACCCGCCCCTGTGCTGTCTCACCTGTCCGCGGCACAAGGAATCTATCAGAGATCTCGTAGTTGTGTCTGCAGATCGTGTCCACCGCGGCCCTCTCCCGCTCTATGTACTCCTTCTGTTTGTTATAGTACTCGGTGTCCCGCCGCCCCAGCTCGGTCACCGCGCGGAACTCGCCCACGTCGCTGTCGAAGCGCGTGTACTCCTCCCGGTTGTAGATGTATCTGACCAGAAGCCGTACGCGCTGCGTCCCGTTGTAAAAATAACACTCGGATTTATACTGTTCCAAAAACCGTGCTGTGGAGACAAGAATTATC 3 chr6_hla_hap2 8871 9054 chr20 4651986 4652103 + -478 CGGTCACACGGGCGGCCTCCTGAGAAGACACTGACAGCGACGCCACCAACCCGGACTCCCTGGGCGGGGTGCGGGCGCTGGGAACCTTAACCGGCCCCACCCGCAACG--CCCACCACCAGCAGCCCAGGGGCTCGTCCTCAGTCTTCCTGAGGCGAACCGGGGTCTGGGGGACCAGGCGGGAAAA TTATTACA-----AGCTGTCTGTGAGGACA--GACAATG------------------CCCCAGACTGGTGGTCAGTGAAGGGAACTGTGA-------CACCTGCAGAGACCCCACCTCTTGCATCCT-----CTAATCCCC-------------------------------ACCAGCCAGGGACA 4 chr6_hla_hap2 9168 9493 chr20 4652536 4652815 + 3321 CCTTCTGGGAGTCTTCACCTGAAAGACACTCTCTG-CTCCTCTCAT-CCCACACG-CTTTACCGGTTCCTTCAACAGCACCCACCGTGT------TCATCCCGTGAACCCTTCCTTAGTGCTGACCTTGTGCCTGGTCTGCGCTGCCTCTAGGAATCCAAACAAAGGAAAA-CAGACCTCTCCACTCCGCTGGGGGAGCTTAAAGAGCAGTGAACGTGATGGCCAAAAACCAAACACACAAGAGCTTAGACAGGAATGAGAAACGTCAGAAGTGTGGAGTTCTG-GAACAGAGAATAA-AAGGATGATCTCAATTACATtagggtgccagagaaggac CCTTCTG---ATCCTGCTCCATCAACCACATTCTGCCTTATCTCATGGCCACAGGTCTTCTCCCTCACCTTAAACAGCACCCA---TGTAGAATATTATTCTATAAATCACACCTAAGAACTGGCCTTGT-------------TGCCCCTGAGAACCCTAAGAGAAAAAAATTCAATCTCTCCACTCT------TGGGTCTTAAAATTAGTGGTAGTGAGGGATAAAA-----------------TTATCCAAGATTGAG------CAGA----TGGGATCCTATTAACAGAGAATAACAAGGCAGACCTTAGTGCTACAA------CATAGAAGGAC 5 chr6_hla_hap2 9494 9730 chr20 4653172 4653343 + 1880 cctctgaagagtgacagttcagatgtgacttgacaggttaagcaggtgagagccagggggcagagtggatggagcctgtgtgtctgtctggacaaaacgggaggcacattttcaggtttaggaaatcccatgtacaaaaggtt----gaattgatgagcttcttcaaaaaactagaacaaagttcactaaagcagagaggctgaggggaaggaaggtaaaagattaggctggagaaatcac CTGCCAAGGAGTGGCTCTTCAGATGTG-----------TAAGTCGATGACAGCAAGAAGAAAGAG----------------GTTGGTTAAGGGGAA--GAGAAGCA---------------ATAATCCCATTTGTGAAAAGCTTGAAGACTTGATGAATTT----------CAAGAATACAG------AGGACAGTGGGGCTGA-GAAAGAGAGGGTATGAG--------GGAGAAATTAC 6 chr6_hla_hap2 17289 17585 chr20 4661672 4661951 + 4841 AATGATGACAACATAGCTGGGGAAAAG----AGAGAAAGTGGAGGAAGAGGTAAGCAGACATGGCTAATTAAGGAAAGCTGAGGGCATGATGGGTGAACCTATGAAATTTAGGACAAGACCCCAGTAAGACAATGAGTTTCCAGGACTTGCTCATTGACTTTCAGCCTTATGAGACATGAACAATGTCCACATTGTCTCAAAAACCCCACACAGAGTATAtagtttgaacattattaaatttctgatatttgattatttttgacttacaaaaatagaatttcatacaatttaTACTACATT AAAGACAACAACGTGACCCTGGAAAAATCAAAGATAAATTGTGAGGACCCACAAGTCCACACGGCTAATTGAGAATAG---AAGGTGAGCGGTGGAACCCTACAAACCTTGGGG--AAGCCCTGCCAAACCAGAGGCTTT-----ATTTCCTGACTGTCTTCTAACCCCCGGAGACGTTAGCAGCCTTCACGCTGTCT--GCAACCCTGCTCTGGGTACTCAGCCTGAACCATAGTAAATTGTTGGC-TCTGACCACTGCTGATATACGAAAATAGAACTTCACAT--------CTGTAAC 7 chr6_hla_hap2 17586 18039 chr20 50705628 50706062 - 1394 AGTTAAATCTCTTCTGTCATGTCTAGTTAGAGCACGTAAGAGATGTAGGAGAAACAAGTATAGAACGGTTAAA---AAAGATTCATAATAAACACTAACCTGGGCCGGTTTTCCAGAGGATGCCTAAAGTTCTTTAGGCACCAATGAATACCGCATAAATGCTCTATATCTGTAAGGTGACTCCACGTACTAAAGATCTCAGCTTCAGTTCCACGGATTTTTCCCCATAAGAAAGAAAGAGCACTAAGTATAACTTTTGTCAGAGAACCTACATAGGCAACAGGGGTACAGGCTTTATAAACATTGGAGTTCAGAAAGAAAAGAAAGGAGATAATGGGGAGGCCACTGGATCCATCCTCACATATGAGGAAGAGGGGCCAACACCAAAGGTCCTGTGGAGGACATAACACT-GGATCG---------------------TCTAGGA----------GAGACCCTTTGA-------------------ATTCCCTTGACT---------CCCACAAAA AGTAGGGTCCTTTTTGTGGACTCAAGCCAGAGACTGTGGGAGA-------AAAATAAATGCAGATATGTTCAAGTCACAAACACCAAACAGGCTCTAACCCACCCTGGGGTCTCAGAAGGAGCCTCCAGTTCTCTAG---------AATAGCCCACAGATGCACATCTTCTCGAAGGCTATTTC-------------CTCAGCTGCTGTGTG------------CTGCAAAGGAAAACCATCACCCAGCCAAGGTTCTG---------------------CGTGGGAACAGGCTGCACAAGCCCTGGCATCAGGAA-----------GAGAGAAAGAGGAAGCC-CTGGGTTCAGCCTCACAGGTGGCCAGGCAGCGGCCTCACAA-----CCTACAGAGGATG---CACTCGGATCTCCCTGCGATGCCCTCACTGACTCTATGACACTTCCACAGAAACCTTCTGATTAGATCAATATTTTACTTATTTTTTTTACTAAAATGAAATATACAAAA 8 chr6_hla_hap2 18040 18735 chr20 4680767 4681434 + 18508 TTTTCAGTAAAAACCTCCTTTTGTCTGACATAAGTCAACATAATAAAGGGAAGTGCTGTATGGGGAAATTATTTTAGCATACTTATTTCTAAATCCTCTAAAGACCCTGAGGACATGTGAT-----GCATAGGTTTTATTGGTGGAGATTTGAGAAGAAATGACCTGTGTGTA--GGCCCTTTACACAAATCTCATGGACAGGACAAGTAGCCAAGCGCCTTTTGT-GGTGGAAATAATTTGGGATCCATCTGATAAAGATGGGCAATCTCTGAAGAAAGTGTCACAATTTCATAAGAGACATAGCCTGGGCACAATGTTAACAAAACTTCCTATTTTTGCCCCCACCCCATAGTAGCTCTGCAGTCACAATGTGCACTTACGTTGGGTGTCCCCAGCCAAAGCCAGTGGGGAGCTCAGCACCGTCAATGTCACTGTCAGCGCTGCCATACAGGAGCCTCCAGGGAGCTTCAGACACACCATGCTGGAGAAGAGGACAAGACCAGTGGTCACAGCAGCAGGCAAGTCTCAATCAGGGAGAACTATGGCCCCCCTCCACCCACATTCCAAATTATAGGAAGGAAGTTACTGATTTCCTTGCTCCTTGATTGGGTAAT-CTCGTGTTGGAGAACCAGTCAGCACCTGAGTTCACTAGCATCATCAGTTGCTGGTCAGAGATGCTGTATGAAGGTCCTCCTCTGAAAC TTTTAAAGAGAGGCCT--TTTTGTCTGGCATAACTCAACACAATGAAGACAGGGCCTGTCCCGG-AAGTTAATTTAACATCATGATTTATCGATCTTCCCGGGGCCCTAAGGGAATATGACACAAGGCATAGATTTTACTGGAAGAAACTTGAAAAGCAATGGCAGATACACAAGGGCCTCTCACACAGGTCT----GAGAGCACAAACATCC---CGACTTCTGTCTGCAGACATAGTTTAGAGTTCATGTGA--AGACTGTGAGGTCACAGAAGATATCA--ATAGTTTCA--AGGGACTTGGCCCAGACA-----GTAAGGAAGTTAGCGCCTTCTTCCCCCCATCCTCAGCAGCCCAGCACCTGGGGTATGCACTTACGCGTGGGGTCTCTGACCAACGCCACCGGAGGGCTCAGCACTGTTAGCAACAGGATCACAGCTGCCACACAGGAATCTCTGGCGAGC------CACACCATGCTGGAGGAGAGGAGAGA--CAGGAGTCAGAGGAGAAGACAAGCTTCAGACTGT---AACTTTA--TTCTCTTTACTCAT-TGCTAAG--AGAAGAACCAGTGGATTCACTGCTTTGCCACTGGATTGGGTAAGGCCAGTGCCGGGGAGCCAATCAGCAGCAAAGGAGACCAGCATCATCAGTTGCTAGTTAGAGATTCAGTATGAAGGTCCCTTTCTGAAAC 9 chr6_hla_hap2 18736 19321 chr20 4681750 4682333 + 8704 AATTGTCT-------------------------------------TCTTTAAAGGATTGTTTTAATTTAGTACTCAAAAGGTTTGATCCAGTTGCATGTAAAACATTTTAATTGGGTCCCTATTGTGAGCCAGCTCTGAGCTGGTCAGTGATGTGTTCACAAGTTTGAGCCTTGTAAGAGCATTCATTTCCCAC--TTGACAAGAGAA----GTATTTGCAGCAGTGACCGTGTTTAGgagtaaatgagatggagggaacatggttgcaaatgtgcag--acctttaatctggtccttattgcaccatatcttaatgtcgtagatttgggaaaattatttcatgtctcacagttgaaatgaaggcaccgtgatcttttaggtctttcaatactggaaaatgctgtgattctgtgGATGCCTCAAGAAGCAGCAGCCCCGGGTATCTGATGAT-ATGACAGAATGACAGCTGTTGACTAGAGAGCTTAATCTGCACCTGTTTACAGGTGGGGATGTCTTTAATAAGTTAAAGGAAATGGAAAGTTAATAA---TTTAATCTGAGTAAAAGGTTGTTTTCAAGTGTGTCTCCTGATGCTGCCCTCAAGTTTAGTGGCAGCTCCAGAACACACACAGG CATTGTATACACATTTAACTTCTTAGGGGATACATTATACATTGCTTTTTAAAGGATCATTTTATCTCCTT--TTTAAATGCTGGATCCAGTTGCAGCTGAGACGCTTTAATCGGGCCTCGGAGCTGGGCTGGCTCTGGGATGGTCAGTCACTCACTCAGCAGTTAGAGCATTAGGGGAGCGTTTCCTCCACAAGGCTGTTGGGACAACTGTGTGTTTGAAAC--------TATGTGGGAGCAAAGGAGAAGGAAG----ACGACTGTCAGC---CAGGCACCTTTAGCCTGGCGCTTACTGCGCTTCGGTTTAATGGTGTAGATGTCG-------------------ACAGT---GATGGAAGTCC----ATTTTGGGGAATTCTTAAAGCTG---AAGGCTGTGGCGCTGTGGGCGCCTGGAGAAACAGCCTCCCCTGGTAACTGATGACGAAGCCAGAATTCAGCCTCTTGATTGGACAGTAGAGTCTACAC--GCCTTCGGTTAGGGAAAT-TCTAACAAGACAATGGAAAATTAAGGTTAGTAATGGTGTAGTCCTGACACAAGGGGCATTTCCAGCCTGATCCCCGA-AATGTTACTGATTCCAGTGGC-GCCCCCCAAAGCACAGAGG 10 chr6_hla_hap2 50208 50394 chr20 4672104 4672281 + 4538 CCTCCTTGAATGTGGTCATCTTCACTTCAGTTCAGGAGTCCTGCAGAAGACACAGGAGAGTGTTGTTTTCAGACATGGCTCTACTAACAGCTTCTTTCCCCCTCTTTCAGGGACTCAGATGAAAGCAGTACAGGAAGAAGAAAAACAAGTTGCTAAGTCTCCCTGAGCCAATACTACTGCAGAGCAC CTTCCTTCAGCCTTGTCACCT-CACCTCAGTTCAGGAGTCCTGCAGAGCACAGGGGACAAGGGTGTTTCCAGACCTAACTCAGC-AGTGGCCTCTCTGACCACCTCC---AGCCTCTCCTGACAGCATGGCAGTGATCAGAGAGG-AACTTCTCATG---CCCCAAGTCAATGCTGCTTCAGACCAC 11 chr6_hla_hap2 50711 50924 chr20 4672282 4672497 + 7077 AGGCCTTTTCTAAGTAGAGAGG---AGTTTTGGCGTAAATTGCCTGATCAGAAATTTGGATCCAAAGTCTTTCCTATTATTTCTGTCT-CATCCCTTATCACCTCTACCATCATTCTAGGAAAGCGAATCTGTTTCTAAAAGAGAATGAAAAGGTATTACCTGTTGGCTGAAGTCCAGAGTGTCCTGGGAAAAAGGGGAAAAGATACACATTTAAAAG AGGCCTTTAGTAAGTGCAGGGAGCAAGGCTCAGTGCAATCTGCCTGGCCAGACCCTGGGATCTTC-GTCTTCCTCGTT-TTTCTGCCTGTGTCCATCACCCCATCCCCCACACTGTAGGGAAAGCAGATATGTCTCTGAGAGAAGACTGAAGAGCATTACCTGTTGGCTGAAGTCCAGACTGTCCTAGAAAAGAGAGAATAAAATAGATGCTTACATG 12 chr6_hla_hap2 51239 52891 chr20 4672498 4673974 + 41426 TATGGAAGCAAATCTGTCCTCCAACACAATATCCCAGCCCCAGATCTCCCACCTGAGATTTCTCTAACACCACAACTTACATGAACCAGGGCAGAGAGGAGCAGAAACTCACCACGTGACCCCTGAAGCGTGAAGTGTCTGTCATAGGATCCAGTGTAATTGTATTAACCTTAGTGGCTCTTCCTTAATTTGCTCCAGGATCTCCAACCAAAGGATCCCTACTTGTTAGCCTTTCTTTTCTCTCTGCAGGCCATAAGCTATTATGCTTTGACATAGTAACCAT-GCACTGATGATTTCTGGATTAGCGGGACATTGGAGGTCGTTTTGGGAAAGAAAGGCTTTATCCAGGGCCACTCATATACTGAGAACTAACCTCTGCAAAGCCATATTTCCTCCTCCAGAAAAGTCTATGGAGAGAGCCAGCTACGAAAGGTTCCTCACCTTTCTGATTCCTGAAGTAGAGAAACAGCCCGGCCCCAAGGAAGAGCAGGCCCAGCACAAAGCCCCCGACTCCACTCAGCATCTTGCTCTGTGCAGATTCAGACCATGCTCCTGAGAGTGGAAGCCA--GGTTTAGTGATTTTTATCCCAAATTGAACCTCTGTAATTGAGATACTGAGATTCAGAGCTTTGAAAATGGGGAAGAAGGCTGCCCTGCAAGAACTAAAATAACTAGCTATTTCTGGGGAAAAAAGGTTTTCAGATCACACTGAACAGTTACAAGGTTAGGCCTCAAACTCATTCAAATATTACAGCCTTGATGTAAGGCATGACTTTGACATCTGATCCACAgaaatcctgagactcaaagaggtttagtagtttgtctagagtgacagagctaataaaaggcagagctgggattggactccCCTCATGCCAGGAAGACCCCTACAGTTCTCCTCTTCTCAGATCACAACAAACAACCCAGAGCAACAGCAGCAGAAATACAATCTCAGACCCAGAGGCAGGGCCTGGAGCCAGGGAGAGTGGGTGACCCTGACCTGTGCCATCATGGGGAGGTTCAAAAGAGAGACAGCCTCTCCCGCCTG-GCAGGCATGACTGCTTTACCATGGGGTACAGGTGCTTTTAGAAATGATTACAGGGCTATCCCCAGTGACCTGTGCTGATGGAGATGAGAATATGGAGCAAATGAAAATAGGATGTGGGAGAGGAGAAACCTGACACTCAGGGATTAGCACAGTCCTGTACTTACTGGGTGAAAAATTTATGAAGTCAGAAAGCTGC--TAACTCCATTGCACCGTGAGAGGGCTCATCATGCTTGGATGCTCCACTTGGCAGGTGTAAACCTCTCCACTCTGAGGAACTGTTTCCAGCATCATCAGTGTCTGGAAGGTCCAGTCTCCATTCTGGATCAGGCCTGTGGACACCACCCCAGCCTTCTCTTCCTGGCCGTTCCGGAACCACCTGACTTCAATGCTGGCTGGACAGAAACCACTCACAGAGCAGACCAGGAGGTTGTGGTGCTGCAGGGGCTGGGTCTTTAAAGGATACACAGTCACCTTAGGATGGACTAGAAGAAAAAATGTAGAGGGAATGAGTCATGAAGACAGAGTAAGTCTCCTTGTTTGGCTGTTTTGTTTGTCTGCTTCTCTGTAAACCTAGGC-----TCTGGCCTTGACCAGGCCTCCAGCACA TGTGGAGGCAGATCTGTCCCCAGACACATTCCCCCAGACTCTGAGCTGCCACATGAGATCCCTCTGGTAACAACACCCACAGCACACAGGACCAAGAGGAGCATGGGCAGAGAACGGAGTTCAGGGAGC--------------------TTCAGT-------CACCAGCCC--ATAGCTCTTCCCCAGTCTTC--------CTCTGTTCTCAGGCTCA-----TGCCAGAATCACCTTAACTTTCACATGTGTTATTTCCTCAGGGTTCAATCAAGTAACTACAGGACTGTTGCTTTCACAGTCCATGGAA-ACCTGAGGTCA-----------------------CAGGGCCAACAGCATCCTGAGAAC----------AAAGCCATGGCTCTTCCCT---GAAATGCTATGGAGTT-GTGGCCCTCACAGGGCTCCTTACCTTTCTGGTTCCTGAAGTAGACGAACAGCCCGGCTCCCAGGAAGAGCAGACCCAGCACGATGCCCCCGACTCCACTCATCTTCTTATTTTGTGCAGACGTGGACTGTGCTTCTGAGAAGGGAAGCCAAAGGTTTGGAGAGGTTTAGCTCAAATGCCATGTCCACTAAGGACCCA-TGAGACTCAGGGCTTTGAGACCATGGAAGAAGTGTGTTCTAGAAGAGCTGGAAT---TGAACACTCCTGGTCA-------TGTTGAGA---AACCAAATATAAAGAGGCTCACACCATGAAGAGCCTTAAATATGGCCGCCCTGAGCTGAGCTGAGA---------------------------GGAAGCCACTGAGCTCTGGGAGT--------------------AAGCAAAGGCAGAGTTGTGACTATGTGTCTCTGAGGTCAGCCATGACCCTGCACTACTCCTTGTCCATCGCCATCAC-------------CAACAGCAGCAGAAACACAACCC---AGCCAGAGGCAGAGGCTGCAGCCAGAGCCAAGAAGATTCCAGGACCTGTGATGTCACTGGCAGGCTCAGATGAG---------------TCTGTGGGGGCATAACTGCTTC-CCAGGGGGCAAAAGTGCTTGTAGACGTG-TTGCACTCCTA--CCCTGTGAGCCATACAGAAAGACTGGACAGCACAAAACTAGT--AGATAGAGTGTGTGGGCGGAGAAAGCTGACAGGCAGGGCTAAGCCACGCCTCCTCCCTGGTGGGAGGGCA-TTCACAGAGTCTGGAAGTTACACTCACTCCACTCGACTCTGACAGGGCTGGTCAGGCTGGGATGCTCCACCTGGCAGGTATAAACCTCTCCACCTTGAGGAACCATCTCCAGCATCACCAACAACTGGAAGGTCCAGTCTCCATTTGGGATCAGGCCAGTGGACACGAGTCCATCCTTTTCTTCCTCGCCATTCCGGAACCATCTGACTTCAACGCTGCCAGGGTAGAAGTCACTCACAGAGCAGACCAGGAGGTTGTGGTGTTTCAGGGGCTGCGTCTTTGAAGGGTACACAGTCACCTTGGGTTCAACTAGAGGAGAAAGAGAGGTGAGGAGGAGCCATGAGGGCAGACCTGTCTTCCCCG------TGGGCTGCCTGCCTGC--CTCCATCCACCCAGGCTGAAGTCCAGGCAGGACTAAGGTTCTACCACA 13 chr6_hla_hap2 53767 54251 chr20 4667791 4668229 + 8221 aagctttctatac-ttcatatttttgtttaattctcacatcagatcagtaaaataaacacccttttcatgcttactggtggagagaataaaacgatgaagataaaacaatttttgcaaagatacaaatctagtaaatggtacactatagattgaa------ccAAATTATATACCCCTCAAGCTCAGTCACTATATCATACTCCTTCACATTCTATTTCTGAGAATAATGTCCCTTGTATTAAAATTATTTATATCCCTTTAATTTATGGATATGCATAGCAATAAGACTACTTCTTTTAATGAATGGCAGCATTATACAATTTGAGGAAGATGCTGTGTAGCAATTGTAGTTCCTTCAAAAGATTCCCCTCATCATCATTATTAGCCTCCTCTGGAAAATGACAAGATTTGCATTTGTCTTATGTGATGACACCCATAGCTCCTGAGAAGTCTCCTTCTTATTAAAGGTAACAGTGGCCTCAAAATTCCTA AGGGCTTTTATGCATTTTTGTTTTAATTTAATGCCATTGTCA---CAGTAAGACAAATATCATCATCGCCCCTACTGATGGTAAGATCAAGA-GATGCTGACTAACC---TCACACAAGAACACAAAGCGGG-ATACACTATACTCTGGATTCAAGAGCTTCTTGGCTCCATGTCTCCTCAGTCTGGGTATGACATCATAGTGCTTCACATTCACCCTCTGAAGACATT----TTTGTATTCCACTGACTTCAGTCACTTGAATTCATGGGTACAAAGAACAATCTGACTACTTGGCTTAATGGACAG-----------------------------------ACTTCTCCTTCCCTCAGCA----CCCCACATGTCCTCCATTATCCTATTCTGGAAA--GAATACACTTGCATTTATCATGTATAATGACACCCGAGGCTCTACACAGGTATCCTTCTTATGAAACCCAGTGATGTTCACAGAGTTCCTA 14 chr6_hla_hap2 58557 58755 chr20 4642168 4642350 + 4275 AGATCTCTACTGGGCAAGGGGCTCAGAATCAGTTTTTGGTTCTTGAGGCTGCAAGTCAATGACATGTCTG--TATCTTCAGTAGAGTGAATCTGAAACCCCGGGGTTTGGCCTCTGAGAATTGGTGAGACAGATGGAGAGGAGGAGATAGGGGTTAGACTGGGGAGCAGAATGAGAAGAGGACCCACAAATGTTACAATAT AAATTTTTTTTGAG-GAGAGAATGAGAATTAATACTTGGCTCTTGAG-----------ATGGCTTCTATGCATATCCTTAGCAGAGTAAATCTCAAAAGTTAGGGCCTGGCCATGGATAACTAGTGAGAATGACACAGTAAAGACTGTTGTGGGTACAGCTGGGAGCATACTGAGA----GATCCACAA--GTTACAGGAT 15 chr6_hla_hap2 82320 82786 chr2 72483971 72484361 - 7888 TTTTAAAACCAAACCACTAGGAAAATATATCACAGCCTGGAC-CAGTAAATTGAAAGGCTATGTTATCATTTCAAGTAATAAGTTGGTGAAAATACAATGAGGTTGCTATCAAAACAATAAGTTGCCATGCCAGGGCAGGAACAGTGCAAGTTGTGAAAGCCCCAG--GCAAAATGGTATTTGGTAATCAGG-GCTCCTCTCCTTTGCTCTAAGGGAGTCAGCTCATACTAGCCCAAATTACTTACTTTT---TCTCCCTTGAATTTCCTTTTGCCAGGGGTTTGTCTCAATTGAGCTCTGTTAATTCAGAAGGCTAAGTAGGCAATGCTAGATTTAGGCTTTTATTCCATCTGTTCTATAAAAACCAGATTTTTCCAAAGCTAGTACTTCATAACTCTGTTATAATCAAGTAGCCAACTGCTCCTCTTTTACTGTTCATTCCTAGATACTAGTATAT--ATCACAATTAAAACCC TTTAAAAACCAATCCACTTGGAAAATATGTTGCTGGCTTGACACAGCAAACAGCA--GATGTATTAATGTTTCAAGTAATTAATTAGTATAAATTCAACATAGTACTCATACAAAAGATAAGGTGCCACGATGGCCCAGCAACACTGCA--CTGCAAAACCCCCAGAAAAAAAATGGCATTTGGTAAGAAAGTGTGTGTTTCTCCTGCTTTAGTGGCCATAGCTTTCCTTGGCTGAAGTTGCTTACTTTTAGGTCTCC------------------------TTGTGGCTACAAGGCTCTGTAAATTCAGA--GCTGATT----AATACTGGGTTTGCACTTTTATTTTGT-----------GAAC---------CCAAGGCCAATACTTC-----------------------TCAACAGCTC--------CTGTTTATTCTCAGCGACTGGCGTGTGAGTGACAACCAACCCCC 16 chr6_hla_hap2 82787 83006 chr3 111726455 111726677 - 8794 CCTTCTCGGCCTGCGCCCTCGCTGGAGGAACGCAAGCAGGAGGCGGGGGAGTCGGAGGAGGTGGCGGCGCTGGA--GCTCCTCCCGGGGACCAGC-GACCCGGGGAGCGAGCACGTCGCTCCGCACCGCTCTTCCTCCAACCGCTG-----AGCCGTCCCTTCTCGCCCTGTCCCAGAGCAGGCACCG--CCGAGGCCCCGCCGCTGGAGCGCGAGGACAGTGGGACCTT CCCTCTCCTCCTGTCCTTTTGCAGGAGGGAAGCAGGCAGCGATCCGAGGGGC--GTCCAAGCGGTAGCGCGGGCACGCTCCTCTCGGGAACTGGCCGACGTGGAGAGGGAGGACCCAGATTCTCACTGCTC-----CGGATTGCTGTGGCCAGCCGTCCCTTCTCGCCATGTCCCACAGCAGGCATCGTGCCGAGGCCCCGCCGCTGCAGCGCGAGGACAGCGGGACCTT 17 chr6_hla_hap2 83007 83176 chr3 111727172 111727341 - 14956 CAGTTTGGGGAAGATGATAACAGCTAAGCCAGGGAAAACACCGATTCAGGTATTACACGAATACGGCATGAAGACCAAGAACATCCCAGTTTATGAATGTGAAAGATCTGATGTGCAAATACACGTGCCCACTTTCACCTTCAGAGTAACCGTTGGTGACATAACCTGCA CAGTTTGGGCAAGATGATAACAGCTAAGCCTGGGAAAACACCGATTCAGGTATTGCACGAGTACGGCATGAAGACCAAGAACATTCCAGTTTATGAATGTGAAAGATCCGATGTGCAAGTACACGTGCCCACTTTCACCTTCAGAGTAACCGTTGGTGACATAACTTGCA 18 chr6_hla_hap2 83177 83260 chr3 111730759 111730842 - 7275 CAGGTGAAGGTACAAGTAAGAAGCTGGCGAAACATAGAGCTGCAGAGGCTGCCATAAACATTTTGAAAGCCAATGCAAGTACTT CAGGTGAAGGGACGAGTAAGAAGCTGGCGAAGCACAGAGCTGCAGAGGCTGCCATAAACATTTTGAAAGCCAATGCAAGTATTT 19 chr6_hla_hap2 83261 83334 chr3 111733697 111733770 - 5779 GCTTTGCAGTTCCTGACCCCTTAATGCCTGACCCTTCCAAGCAACCAAAGAACCAGCTTAATCTTATTGGTTCA GCTTTGCAGTTCCTGACCCCTTAATGCCTGATCCATCCAAACAGCCAAAGAACCAGCTGAATCCAATTGGCTCA 20 chr6_hla_hap2 83335 83457 chr3 111734694 111734816 - 10248 TTACAGGAATTGGCTATTCATCATGGCTGGAGACTTCCTGAATATACCCTTTCCCAGGAGGGAGGACCTGCTCATAAGAGAGAATATACTACAATTTGCAGGCTAGAGTCATTTATGGAAACT TTACAGGAATTAGCAATTCACCATGGCTGGCGGCTTCCTGAATATACCCTTTCCCAGGAAGGAGGACCCGCTCATAAGAGAGAATATACCACGATTTGCAGGCTAGAGTCATTCATGGAAACT 21 chr6_hla_hap2 83458 83553 chr3 111737144 111737239 - 7974 GGAAAGGGGGCATCAAAAAAGCAAGCCAAAAGGAATGCTGCTGAGAAATTTCTTGCCAAATTTAGTAATATTTCTCCAGAGAACCACATTTCTTTA GGAAAGGGGGCATCAAAAAAACAAGCAAAGAGAAACGCTGCTGAGAAATTCCTCGCCAAATTTAGTAATATTTCTCCAGAGAACCACATTTCTCTA 22 chr6_hla_hap2 83554 83730 chr3 111741975 111742151 - 12379 ACAAATGTAGTAGGACATTCTTTAGGATGTACTTGGCATTCCTTGAGGAATTCTCCTGGTGAAAAGAACAACTTATTGAAAAGAAGCCTCCTTAGTATTCCAAATACAGATTACATCCAGCTGCTTAGTGAAATTGCCAAGGAACAAGGTTTTAATATAACATATTTGGATATAGAT ACGAATGTGGTCGGACATTCCCTGGGATGCACTTGGCACTCCTTGAGGAATTCCCCTGGTGAAAAGATCAACCTTCTGAAAAGGAGCCTCCTCAGTCTGCCCAACACAGACTACATCCAGCTGCTCAGTGAGATAGCCAAAGAGCAAGGCTTCAGTATAACATACTTGGATATAGGT 23 chr6_hla_hap2 83731 84568 chr3 111744707 111745512 - 38520 GAACTGAGCGCCAATGGACAATATCAATGTCTTGCTGAACTGTCCACCAGCCCCATCACAGTCTGTCATGGCTCCGGTATCTCCTGTGGCAATGCACAAAGTGATGCAGCTCACAATGCTTTGCAGTATTTAAAGATAATAGCAGAAAGAAAGTAAATTTGGAGCAACTTAAAAAATCTTTCAGTAGCACATAAAAAGTTCCCCTCTGGCCCCTTCCCAAGTAAAACTTTTACCGTAGT----GTTTATGTCTTGTTTCTAAAT-CTCTTCATAGATTCCATCAACACTCCAGATTTAATTATCTCCTCATAGTTGTTGTTAAGCTCTTTTTAATGGCTTCAACTTTGTATCAGTATATTGTATTTATAAACTTTGTACCACAAGAGAGAGTGTAGCACCCATTTTACAGTGCCATGCACATCAGAGAAAGAAACTGCATGTTTGTTGTTGATGATGAA---ATAAAAA---TGCTAGCAACAGTCTTTCTTACTGGTGCTTAAGCTCTTCTTTGCACAAAGCTTTATAAAGGGAATTCAAAGGAAGCCCTTTAGAATTAGAGTCTTGAGGGACAGCACTAACAGGCCTTTATTAAGTATGATTGTTAAATTTCAGGGAACATGATTGGTCTGCTGTGTATTTGAATTCATGTAACAAAGAACTGTTACGAT----GGGATTCTGCTCATTTTATTAAAAAGCTACTGACTTGACTGTCGTCCTGTTCTTGTTAGCCA----TTGTTGTGAATAAGATTTTAATGTTGATAATTCTGTTATTTACATATCTCTAATTTACTTTGAAATTCAAAGGTGAAAATAAAAAACGATGGCCTAAGTAAAATTTACAAACATA GAGCTGAGTGCCAACGGGCAGTATCAGTGTCTCGCAGAGCTGTCCACCAGTCCCATCACCGTGTGTCATGGCTCAGGCATCTCCTGTGGCAATGCCCAGAGTGACGCCGCTCACAATGCCCTGCAGTATCTAAAGATAATAGCAGAAAGAAAGTAGGCTCGGAGCAAGT----GAGTCTTTCCAAAGCGCA-AAGAAGTTTCCCTCGCACCTCTTCCC-AGTAAAACATTTACCGTAATGTACGTCTGCGTGTCCTTTCCAAATCCTCTTC--GGATTCCCTCAACTTCCCAGATTTAATCGTCTCCTGGTAGTTGTTATTAAGCTCTTTTTAATGGCTTCAACTTTGTATTGGTATATTGTGTTTATAAACTTTGTACCACAAGGCTGAGTGTGGCATCCATTTTACAGGGTCAGACACAT---AGGTTGAACCTGCATGTTTGACTGTAACAGTGAAGGGATAAGAGCACTGCTAACAACAG----TCTTACTGGTGCTTAAACTGTTCTGTG--CAAAGCTTTGTGAAGTGGATTCTGAAG-AGCCCTTTTAGACTAGAGCGTTG---------------AGGCTTGTGATGAATGTCATTGCTAAATTTCAGGGAACATGGTCGGTTTGCTATGTATTTGAAACCATGGAATAAAAAGCTGTTCTTATAATGGGGACTCTGCTCATTTTATTAAACAGCTACTCGCTTGATCTTAAATTTATTCTTTGTAGACAAACTTTCTTTTGAAC---ATTTT--------CAGTTATATTGTCTACACACCACTAGCTTACTGCG------GAGAGTGAAAGTAAAAACCCGAGGCCTAAA-AAGATCTGCAAATGTA 24 chr6_hla_hap2 84621 85822 chr2 72484387 72485534 - 40360 TGTCATTTTGCTACACACAGCCTCGGGGCCCATCAGCCAGTAATTCTGCTTCCCATAATTAATGTGTCATCCTCTCATGTTTTTGCATGCTCTCCAGGCTCAAAGATGCAGCATGTAATAATTTTAAGAAATGTACATCCACATCTTGATGACTAGAAATGGGGATCCACAAGGAATCTTTCGAAGTTCTTATCCAAACTAGTCTCCCTCCCAATTCCACATCTTAAAATCAACTTGTATGCCCTTGAACAAATTACACAAAACGAGGAAAACAAAGACCCAGAAAA------CTTTTTTCCCCAAGTTAGTGACCTCATGAATTTTGTTTCACAGCTTATGGAAAATGGTAAGGTGACACTTCTGGTAAATAGGATGTTGGCAA------CAAAGAGAAAATATCTCTCCTCAAACTCCACCAAC----TCTA----ACCTGCCAGCCCGT-TGTTACCTGTGTAGTAAGAAGAGTCTGGTACCTTGGAGAGCTCTGGCTTGTTACAGGAGAGATCCTTACTGCCAGGATAAACACTGGCCACAGGAA-ATATAAGTTCTAAAACTCTCCTGTAA--TATTTCTGATCCAA--TTTAGCA-CGACTTCTTTTCATTTTATTTTTTAGAACTGAAACATTTTAAAAGAACCAGTGTCCAGAGGCAAGTGACATATGCCTTACACGTGTGGCCATCCTTAATTTC-TTCATTCATAAACTTTGCTTAAAAGTCTAAAATCCCCAATTCTCTATAAAAAATATATTCTTGCCCTCAGTCCTGATGGCCACTGGCAAAGACTTTTATTTCC-CAATGGATGAGAGAGGCTCCTTTGTCTTCTTGGTCATAGTTGGGATGACATGCATGTGGTCATCCACACACTTGGTCACACAGCCAACCAGCTGCTGCTTCACCTGAAGCTCCTTACTCCCAGCATCTATTGAATCTTTGGCTTTGTGGTTGCAATGCATGGTGCACCGGGCCAGGCAGTCCTGGAACT---------CACTGGTGACCAAAGCCTGGGATTAAGCCAGAGGAACATGGCAGAGTTTGACACACTGGTGCACCTGCTGCATGGAAGCCTGCCTGTCCTCACGACAGCTGGCACTTCAACGGAACATGAGACCCTGCATATTCCGGATGTTCTCTCTCTCCAGATTGTTCAGGATGGAGTCCACTGCCTCCTGCACCAGCAGCGGCTGCAGCTCCTCCATGGCGACCCCGTGCTGCCCCGTG TGTCACTTTGGTGTACAAG-------------TCAGTGAAGAAAGCTGTTTCCCATGTACACTGTGACACTGTTTGGCTTTTCTG----------GGGCTTCTAGA------ATAACAGAATTTGAAGAAATGGACATTCCCATCTTGATGGCCAGAAA-------ATACTAGGAACCTTTAGAAGTT---ATTCAAAGCACTCTCCCTCCTG------TATCTTAAATCCA--CTGTGTGCCCTTGCACAGAAGACA-AAACCAAGCAAACTGTAGATTTGGAAAGGAGACCCTTTCCTCTCTAAATCCCTAGCCTACTGGGTTTTGTTTCACAGCATATGCATGGTGGTGTGGTGTTACTTGTGGTGAACAGGAT-TTGCCAAGCTTCTCTGAGGAGACCCACCTCTCCTCAGGTTTTACCAGCAGGTTTTAGGAGAGCCACCAGCCTGGATGTT-----TGTAGTAGAAA---TCTCAGCCCTTGGA---------------ATAAGGTTGATCTCTACTAC-AGAACAAACATTG--CACATAAATATTTAGGATCTAGACTTCTCCTCTGAGCTATTTGTGATCCAAATCTCAGCAGCAGCTTCTTTCCACTTCATTTTCTAAGATCCAGA---TGTAAAGGAACCAGTTTCTGGCAGTGAGCTTAGTTTGCCTGGAACTTGCTGT-GTCCTAAGTTTTGCTCATTCGTAAACATTGCTTAACA-TATTAAACTTCCATTCTTCCGTAAATAG------CCTGTCCTCAGCCCCAATGGTCACTGGCAAACAATTTTAATGCCATTTTTTATGACAGAGACTCCTTGATCTTCTTGGTCATTGCTGGGATGAGGTTCATGTGGTCATCCACACACTTGGCCACACAGCTGTCTAGCTGTCACTTCACCTGAGGCTCCTTATTTCCTGCATCCATTGCGTTTTTGGCTTTGTCATTGCAATGTATGGTGCACCGGGCCAGGCAGTCCTGGAACCTTTCCAGAGCGCTGGTGACCAGGGCCCGGGCTTGAGCCAGAGGTGCATGGCAGCGCTCTATGCATTAG------TGCTGCATAGACGCCTGGTTGTCTTCATAGCAGTTGGCACTGCACTGGAACATAAGGCCCTGCATCTTCCGGATGTTCTCTTTCTCTACACTTTTCACCATGGCGTCCACAGCCTCCTGAACTCGGAGTTGCTGCACCTCCGCCTTGGCGATCCTGAGCTGCTCCGTG 25 chr6_hla_hap2 87463 88378 chr20 4671808 4672666 + 20142 GGACTAGATGATTTTTAT-CTCCGTGTGT--GAGAAACATTTAATAATGTAATGTGTTTGTGGCACAAGGGGGGAGTACAGATGCACGGGAGGCAGG--AAGGGTTAGG--TAAAGGGGAGCACAAAAGTTGAAGATGAGGTGCTGCCATCAATGCCAGGACTTCAGGCCAAAGGCAGGGGCTGAGGAAGCCACAAGGGAGGACATTTTCTGCAGAGTTGCTGAACCAGTAGCAACCAGATCCTGAGAAAGCCCTCTCTTATGGAAGAATAACAGCCAGGTGGGAAAGCTTTTCATCCTGCAAAGCTGG-------GGAAGAAGGTTCCTCCTTGAATGTGGTCATCTTCACTTCAGCTCAGGAGTCCTGCAAAAGACAGAGGAGAGTGTTGTTTTCAGATCTGGCTCTACTAACAGCTTCCTTTCC--CCTCTTTCAAGGACTCAGATGAGAGCACTGCAGGAAGAAGAAAAACAAGTTCTTAAGTCTCCATGAGCCAGTACTCCTGCAGAGCACAGGCCTTTTCTATGTGGAGAGAAGGAGTTTTGGTGTAAATTGCCTGATCAGAAATTTGAATCCAAAGTCTTTTTATTATTTCTGTCT-CATGCCTTATCACCTCCACTATCATTCTAGGGAAATTGAATCTGTTTCTAAAAGAGAATTAAAAGGTATTACCTGTTGGTTGAAGTCCAGAGTGTCCCAGGAGAAAGAGGAAAAGATATACACTTAAAAGATATGGAAGCAAATCTGTCCTCCAACACAATGTCCCAGCCCCAGATCTCCCACCTGAGATTTGTCTAACACCACAACCCACAGCAACCAGGGCAGAGAGGAGCAGAAACAGACCATGTGACCCATGAAGCGTGATATGTCTGTCACACGATCCAGTGTAATTGCATTAGTCTTAGTGGCTCTTCCTTAATTTGCTCCAG GAAGCAGATGACTTTCATTCTTTGTTTATTTGAAAAAGATGTCAGAAAGCA-------TATGACAACAG--------ACTGACTCAGAAGCGCCAGGCAAAGGGCAAGGGACAAAAGGGAGCAGGAGAGGTGA-GAGAGGGGGCTTCTGTCC---CCGGAGCTGCAAGGTCTGGCCAGGGGTTAAA-CAGCCACAAGG-AGCACAGAT-CTCCAGGGTGGA-GAATCAGGAGGAGCCAGGTCCTGGAAGAGCACTGTCTC-TGGAGGAATGTAGGCCAAGCAGGACATGTTTTCA------AGACATGGTGACAGTGGGAGAACGC-CTTCCTTCAGCCTTGTCACCT-CACCTCAGTTCAGGAGTCCTGCAGAGCACAGGGGACAAGGGTGTTTCCAGACCTAACTC----AGCAGTGGCCTCTCTGACCACCTCCA--GCCTCTCCTGACAGCATGGCAGTGATCAGAGAGG-AACTTCTCATGCCCC---AAGTCAATGCTGCTTCAGACCACAGGCCTTTAGTAAGTGCAGGGAGCAAGGCTCAGTGCAATCTGCCTGGCCAGACCCTGGGATCTTC-GTCTTCCTCGTTTTTCTGCCTGTGTCCATCACCCCATCCCCCA-CACTGTAGGGAAAGCAGATATGTCTCTGAGAGAAGACTGAAGAGCATTACCTGTTGGCTGAAGTCCAGACTGTCCTAGAAAAGAGAGAATAAAATAGATGCTTACATG-TGTGGAGGCAGATCTGTCCCCAGACACATTCCCCCAGACTCTGAGCTGCCACATGAGATCCCTCTGGTAACAACACCCACAGCACACAGGACCAAGAGGAGCATGGGCAGAGAACGGAGTTCAGGGAGC--------------------TTCAGT-------CACCAGCCC--ATAGCTCTTCCCCAGTCTTCCTCTG 26 chr6_hla_hap2 88730 90131 chr20 4672702 4673974 + 37991 CATAAGCTATT-----ATGCTTTGACATAGTAACCAT-GCACTGATGATTTC-TGGATTATCAGGACATTGGAGGTCATTTGCGGAAAGAAAGGCTTTATCTAGGGCCACTCATATACTGAGAACTAACCTCAGCAAAGCCATATTTCCTCCTCCAGATAAGTCTATGGAG--AGAGCCGATACAAAAGACTCCTCAGCTTTCTGATTCCTGAAGTAGATGAACAGCCCGGCCCCAAGGAAGAGCAGGCCCAGCACGAAGCCCCCGACTCCACTCAGCATCTTGCTCTGTGCAGATTCAGACCATGCTCCTGAGAGAGGAAGC--AAGGATTAGTGATTTTTATCCTAAATGGAACCTCTTTAATTGAGACCC-TGAGATTCAGAGCTTTGAAAATAAGAGAGAAGGCTTCCCTGCAAGAATGAAAATAACTGATCATTTCTGG--------AGAAAAAAATGATTTTCAAATCACACTGCACAGTTACAAGGTTCAGGCATCAaactcattcaaatattacagccttgatgtaaggcacaacttcaacatctgatcaacagaaagtctgagactcaatgaggttaagtagtttggctagagtgacagagctaataaaaggcaaagctgagactggattccCCTCATGTCAGGAGGGCCCCTACATTACTTCTCTTCTCAGGTCAAAAAAACAACTCAGAGCAACAGCACCAGAAACACAGTCTCACACCCAGAGGCAGGGCCTGGAGCCCAGGGAGAGCAGGTGAGCCT----GATCTGTGACATCATGGGGAGGTTCAAAACAGGGACAGCCTCTCCTGCTTGGCAGGCATGACTGCTTCCCCAGGGGGTACAGGTGTTTCTAGAAAGTATTACAGGGCTACCCCCCAGTGACCTGTGCTAATGGAGATGAGAACATGGAGCAAATGAAAACATGATGTGGGAGAGAAGAAACCTGACACTCAGGGATTACCAAAGACCCCTTCATGGTTGGTGAGAAATGTATGAAGTCAGAAAGCTGC--TCACTCCATTCCACTGCATGAGAAGGCTCATCATGCTTGGGTGCTCCAGTTGACAGGTGTAAACCTCTGCATTCTGAGGAACTGTTTCCAGCATCACCAGGGTCTGGAAGGTCCAGTCTCCATTCTGGATCAGGCCTGTGGACACCACCCCAGCCTTCTCTTCCTGGCCATTCTGGAACCACCTGACTTCAATGCTGCCTGGATAGAAACCACTCACAGAGCAGACCAGGAGGTTGTGGTGCTGCAGGGGCTGGTCTTTTGAAGGATACACAGTCACCTTAGGTTGGACTAGGAGAAGAACAAGTAGAGGGAATGAGTCAGGAAGAAGAGTAAGTCTCCATGTTTTGCTGTTTGTCTGCTTCTCTGTAAACCCAGGC-----TCTGGCCTTGACCAGGCCTCCAACACA CATGTGTTATTTCCTCAGGGTTCAATCAAGTAACTACAGGACTGTTGCTTTCACAGTCCAT--GGAAACCTGAGGTCAC-----------------------AGGGCCAACAGCATCCTGAGAAC----------AAAGCCATGGCTCTTCCCTGAAATG---CTATGGAGTTGTGGCC--CTCACAGGGCTCCTTACCTTTCTGGTTCCTGAAGTAGACGAACAGCCCGGCTCCCAGGAAGAGCAGACCCAGCACGATGCCCCCGACTCCACTCATCTTCTTATTTTGTGCAGACGTGGACTGTGCTTCTGAGAAGGGAAGCCAAAGGTTTGGAGAGGTTTAGCTCAAATG--CCATGTCCACTAAGGACCCATGAGACTCAGGGCTTTGAGACCATGGAAGAAGTGTGTTCTAGAAGAGCTGGAAT---TGAACACTCCTGGTCATGTTGAGAAA----------CCAAAT-----------ATAAAGAGGCTCACACCATGAAGAGCCTTAAATATGGCCGCCCTGAGCTGAG-------------------CTGAGAGGAAGCC--------ACTGAGCTCTGGGAGT--------------------AAGCAAAGGCAGAGTTGTGACTATGTGTCTCTGAGGTCAGCCATGACCCTGCACTACTCCTTGTCCATCGCCA----------TCAC--CAACAGCAGCAGAAACACAACC---CAGCCAGAGGCAGAGGCTGCAGCC-----AGAGCCAAGAAGATTCCAGGACCTGTGATGTCACTGGCAGGCTCAGATGAGT--------------CTGTGGGGGCATAACTGCTTCCC-AGGGGGCAAAAGTGCTTGTAGAC-GTGTTGCA---CTCCTACCCTGTGAGCCATACAGAAAGACTGGACAGCACAAAACTAGT--AGATAGAGTGTGTGGGCGGAGAAAGCTGACAGGCAGGGCTAAGCCACGCCTCCTCCCTGGTGGGAGGGCA-TTCACAGAGTCTGGAAGTTACACTCACTCCACTCGACT--CTGACAGGGCTGGTCAGGCTGGGATGCTCCACCTGGCAGGTATAAACCTCTCCACCTTGAGGAACCATCTCCAGCATCACCAACAACTGGAAGGTCCAGTCTCCATTTGGGATCAGGCCAGTGGACACGAGTCCATCCTTTTCTTCCTCGCCATTCCGGAACCATCTGACTTCAACGCTGCCAGGGTAGAAGTCACTCACAGAGCAGACCAGGAGGTTGTGGTGTTTCAGGGGCTGCGTCTTTGAAGGGTACACAGTCACCTTGGGTTCAACTA-GAGGAGAAAGAGAGGTGAGGAGGAGCCATGAGGGCAGACCTGTCTTCCCCGTGGGCTGCCTGCCTGC--CTCCATCCACCCAGGCTGAAGTCCAGGCAGGACTAAGGTTCTACCACA 27 chr6_hla_hap2 90919 91563 chr17 73209617 73210274 - 19462 GTGGCAGGTGCCATGGTGGGTGCTGCTGGGGCGACGATGGCAGGGGGCCCTGAGG----------TCACCCTCCCGGGTGCGGTGAGGGAGGAGGGGACCACGAGCCCATCCCTTCTTTGAGAGGCCCTCCAGCCACCACCATCCCATGTCCCTATGGTGGCCCCTGGGCTGGCCCATGGCCGCAGGC-CTCACAGCTGCTGCCAC-----TGATGG-GTCAGAGCCACCCTGCAAACTTGGGAGGCATGGGGAGGTGGCCTCTGGCTCCAGGGCAGGGCTGCAGGGGCAGGCGGGCTGTGAAGCACCCAAGGCTGTGGCACCGCGGAGAGACTGGCACGGCTGAGCGCCCACAAGTGCTCCC---AAGTTCACGAGTGGCTGTGGCAGTCCTACTGCGGCTACCTCACCTGGCGCAGCATCCCGGCTGCCTTCCCCACCTACTGCAGCCC-CCAACCATCCCCACGGAGCTTCCCTTTGGGCAGCGCTGCTGTCCCCCAGGCCACAG-----------------------------------------------GCCTAACCTGGGAACAGCTGCTGGCATCAG---CACCCCGGCTCAAGTCGTGGGCCTGGGACCCCAGGCTCCTCATGTGCAGGCATCAGTCTGGGTCACTCCAGTGACAAAGGTAGGATCCATAGCCCCTTCGGGAAGCCCGAGCGAGACCAGGCGACAGG GTGACAGGCGGCGCGGAGGGTGCCTCCGGGGCGACGATGGCAGAGGGGCCCGAGGAAGCCCGGAGCCGCCCTCCCGGGCAGGACGGCGGTAGCGAGGACCACGAGCCGGTCCCTTCCGGACCAGGCTCTCCCTCCTCCTCCTCC----------------GCC-----GCCGCCCCCCGGCCCCCGGCTCTCACGACCGTCGCCTCGGCGGTGCCGGAGCCGGAGCCGCAGTGCGAGCTCCGGAAGCGCCGGGAGACGGGC------------GCAGAGCCTCAGGAGCCGGGGGGCTGCGAGGCGTC-----------------GGACGGGCCGGGGCGGCTGAGCGCGCGCGAGTACTCGCGGCAGGTGCACGAATGGCTGTGGCAATCCTACTGCGGCTACCTCACCTGGCACAGCGGCCTGGCCGCCCTCCCCGCCTACTGCGGCCCGCCTCCCGCCGCCCCTCAGCCC--------GCAGCCCCGCCGCCGCCCCCGCCGCCGCCGCAGCTCGCTTACTACAACCCCTTCTACTTCCTAAGCGCTGCGGCGCCAGGGCCGGGGGCGGCCACGAGCGCCGGCGCCACCCCGACAGCCGTCGCGGGCCTGACGGCCCGGGCCCCGCACGTGCAGGCATCTGCCCGGGCGGTCCCTGTGACCAGGGTGGGCTCTGCAGCCCCTGCACGGACGGCGAGCGACACCGGGCGGCAGG 28 chr6_hla_hap2 91564 91687 chr17 73211268 73211391 - 9993 CAGGCAGATAATATGTTATTCTATCCTTGGCCCACAGATTTATGGTAGAGATGGTGGATTTCTTTATTCTCTTCTTTGTAAAAGCAACCATTATCTTAAGCATTATGCACCTCAGTGGGATAAA CAGGTAGAGAGTATGTCATTCCATCCTTGGCCCACAGATTTATGGCAGAGATGGTGGATTTCTTTATTCTCTTCTTTATAAAAGCGACCATTGTCCTGAGCATCATGCATCTCAGTGGGATAAA 29 chr6_hla_hap2 91688 91809 chr17 73213363 73213484 - 9106 GGATATTTCTAAGTTTGCTATGCATTATACAATAGAAGAAATGAATGAAGACACATCACTGGAAGACTTGCAGAAAATGATGGTTGTGGCTCTTTTATACAGATTATTAATTTGTTTCTATG GGACATCTCTAAGTTTGCCATGCACTATATAATAGAAGAGATTGATGAAGACACATCAATGGAAGACCTGCAGAAAATGATGATTGTGGCACTTATATACAGGTTGTTAGTTTGTTTCTATG 30 chr6_hla_hap2 91810 91950 chr17 73214348 73214488 - 11118 AGATAATTTGCATTTGGGGAGCAGGTGGAGCTACCCCAGGGAAGTTCCTGCTGGGCATTTGAGTTGAGACATGTGATACATTAGTGCTTATTGCACCAAGTCAGGTTTTAGTGATGCCTTCCTCAAATGTTAGCATTACAA AGATAATTTGCATTTGGGGAGCAGGGGGAGCTACCCCAGGGAAGTTCCTGCTAGGGCTTCGAGTTGTGACATGTGACACATCAGTACTCATTGCTCCAAGTCGGGTTTTAGTGATTCCTTCCTCAAATGTTAGCATCACAA 31 chr6_hla_hap2 91951 92482 chr17 73215751 73216283 - 31612 CGAGCTTTGATCAAGAATTTTTTGATTGCTTCTTTTTTTCCCTGCTTATATCACACTGCTGTTTTTTCAGCATAATTGAACAGCCTATGACACTGTAGCAGGAACCATTGTGGTAAAAAGAAATGGGGTCAGATGATGCCCCCCAAAGCCCTGATTTCCACAT---GCTATAATAACGAGACTAAATTATGTATCAAGGCTATCAGTATCTCTAGGTTACACTAATTGATGATTTAGAAATTAAAGCAGTCACTCTAGTGTGATGCAGGTGACTACTCTGAAAGTATCGTTTTTACTTGAATGCCAAAGAATTTTTCCAGAAGAAAAACCTATTAAATTCAAGTATTAAA-ATTTTTAGATCAAAAAGGCAAATGATTATATAAACAAT-----GGACAATATATACTTT----CTTAAGAT-CTAAGAATTTGCTGAAAGCATTTTCAGCTTTGAAATCTCCAAATGAAACTTTAAAATTTATTTTGGTTTATCCCAAAATAATGGA-AAATATCCAGTTGTGTTTTGTAAACACCTATGTAACTC CGAGCTTTGATCAAGAATTTTTCTATTGCTTCTTTTTT-CCCTGCTTTCATCACATTGCTGTTTTTTCAGCATAATCGAACAGCCTATGACATTGTAGCAGGAACCATTGTGGTAAAAAGAAATGGGGTCAGATGATGCCCC--AAAACCCTGAATTCCACTCTTAGGAATAATGACAAGACTAAATTATGTATCAAGGCCAACATTATCTCTGCGTTACATTAGCTGATGATTTAAAAATTAAAGCAGTCACTCTGGTGTGGTGCAGGGGACTGTTCTGAAAGTGTTGACTGTACTTAAATGTCAAGGAACTTTTCCGGAAGGAAAAACTATTAAATTCAAGTGTTAAATATTTATAGGACAACAAA------AGTTTCATAATCAATATATAGGTAAATACATACTTTAACATTTAAGATAACCAAAATTTGCTGGAAGCATTTTCAGCTTTAAATTCTCTAAATCAAACTTTAA-----ATTTTGGCTTATCCTAGCGTGATTGAGAAATATCCAATTGTGTTTTATAAACACCTGCAGAACTC 32 chr6_hla_hap2 96161 96217 chr20 4650392 4650448 + 3293 CTGCTCACTCCACTCCACTGTGATAGGGCTCATCACACTTGGGTGCTCCACTGCGCA CCACTCACTCCACTCCACTCTGACAGGGCTGGTCAGGCTGGGATGCTCCACCTGGCA 33 chr6_hla_hap2 97930 98436 chr20 4651517 4652022 + 13098 CACAACAGCCAAAGACAAATCCACACTC---------TACACACACACCTCTGCCCTCA----GAACCCCTTGCTCAGGATTGAGAGGATTCTAAATGTTCACAGATGTGTGTGTGTGTGTCTCTCTCTCAACACACAAACACTCAGATTCCCA---GCTCACAGGGACTCAGACCCC-----------GCCCCCCGCC--GTGCTCATTTCGCCGCTGCACTGTGAATCTCTCCACAACCCCATAGTTGTGTCTGCATTAGTTGTCCACTTCGGCCCGCTTCTGCTCCAGGATGTCCTTCTGGCTGTTCCAGTACTCAGCGTCAGGCCGCCCCAGCTCAGTCACCGCCCGGAACTCCCCCATGTCGCTGTTGAAGCGCACGTACTCCTCTTGGTTATAGAAGTATCTTTACAGGTACC------GCTCCGTCCCATTGAAGAAATGACACTCAGACTTAGCCTGCTCCAAGAAACGTGCTGTGGGGACACGAACGATCCGGTTACAGAAGCGGACTCCGGGGA-AGACACTGACTGGCCCCA CACAACATATACACACAAATGCACACACACACAAATGCACACACACACAAATGCACACACACAGATGCACACACACAGAGATGCACG-------------CACAGATGCATACGCAC--------------ACACATACACACACAGATGCGCACACACACACACACACACACACCTCTTAACTCATCTACTTCCCATCTAATGCTTACCTTTTAAGTTCGACATGAAGATATCAACCAGGTCATAGTTATTTCTGCACC---TGTCCACAGAGGCACGGTAATTGTCCAGCATGTCCTTCTGGGTGTTCAAGTACTCAGCTATGGGCCGCCCCAGCTCAGTCACTGCCAGGAACTTCCCAAAGACACTGTCAAAGCGGGCAAACTCTTCCTGGTTATAGATGAATCTGGTCACGCTCCACACATGCTCCCTCCCCTTGACGTAGTGACACTCAGCCTTCAACTGCTCCAGAAAACGTGCTGTGGGGACAGGAACACTCTTATTAC--AAGCTGTCTGTGAGGACAGACAAT-----GCCCCA 34 chr6_hla_hap2 98533 98603 chr20 4760762 4760832 + 2094 CCCAAGGCTTTTGGGACCCCCTCCCTGCCTCCAGCCTGTTCTGGAGAACTCAGTGCAGGAGCTGGAGGAGG CCAAAGATTTGTACCACCACCACCCAGCCCCCTGCTTGTTCTGTGTACCCCAGAAGAGGATCTACGAAAGG 35 chr6_hla_hap2 98646 98962 chr20 4652549 4652815 + 3065 CTCCACCCCCAAAACACTCTCTGCTCCTTCTCTCAT-CCCACACG-CTTTACCGGTTCCTTCAGCAGTACCCACCGTGT------TCATCCTGTGAACACTTCCTTAGTGATGACCTTGTGCCTGCCCTGCGCTGCCTCTAGGAATCCAAACAAGGGAAAA-CAGACCTCTCCACTCCACTGGGGGAGCTTAAAGAGCAGTGAAAGCGATGGCCAAAAACCAAACACGCAAGAGCTTAGACAGGGATGAGAAATGTCAGAAGTGTGGACTTCTA-GAACAGAGGATAATAGGAT-GATCTCAATTACACtagggtgccacagaaggac CTCCATC----AACCACATTCTG--CCTTATCTCATGGCCACAGGTCTTCTCCCTCACCTTAAACAGCACCCA---TGTAGAATATTATTCTATAAATCACACCTAAGAACTGGCCTTGT-------------TGCCCCTGAGAACCCTAAGAGAAAAAAATTCAATCTCTCCACTCT------TGGGTCTTAAAATTAGTGGTAGTGAGGGATAAAA-----------------TTATCCAAGATTGAG------CAGA----TGGGATCCTATTAACAGAGAATAACAAGGCAGACCTTAGTGCTACAA------CATAGAAGGAC 36 chr6_hla_hap2 98963 99195 chr20 4653172 4653343 + 2359 cctctgaagagtgtcagttcagatgtgacttgacaggttaagcaggtgtgagccagggggcagagtggagcctgtgttgtctgttgggacaaaacgggaggcacttttcaggtttaggaaatcccatgtac-aaaagcttgaa---ttgatgaacttcttcaggaaactagaacaaagctcactaaagcagagaggctgaggggaaggagggtaaaatattagattggagaaatcac CTGCCAAGGAGTGGCTCTTCAGATGTG-----------TAAGTCGATGACAGCAAGAAGAAAGAG-------------GTTGGTTAAGGGGAA--GAGAAGCAAT--------------AATCCCATTTGTGAAAAGCTTGAAGACTTGATGAATTT----------CAAGAATACAG------AGGACAGTGGGGCTGAGAAAGAGAGGG------TATGAG---GGAGAAATTAC 37 chr6_hla_hap2 105787 106102 chr20 4661672 4661967 + 5283 AATGATGACAACATAGCTGAAGAAAAAT-AGAGAGAAACTGGAGGAAGAGGCAAGTGAACATGGCTAATTAAGGAAAGCTGAGGGCATGATGAATGAAAC--TATGAAATTTAGGAAAAGACCACAGTAAGACAATGAGTTCCCAGGACTTGCTCATTGACTTTCAGCCCTATGAGATGCGGACAATGTCCACATCGTCTCTGCAACCCCACACAGAGTATAtagtttgaacattattaaatttcagatattttactatttttgacgtacaaaaatagaattttatataatttatcctaTGTTAGTTGAATCTTTTCTT AAAGACAACAACGTGACCCTGGAAAAATCAAAGATAAATTGTGAGGACCCACAAGTCCACACGGCTAATTGAGAATAG---AAGG--TGAGCGGTGGAACCCTACAAACCTTGGGGAAG---CCCTGCCAAACCAGAGGCTTT----ATTTCCTGACTGTCTTCTAACCCCCGGAGACGTTAGCAGCCTTCACGCTGTCT--GCAACCCTGCTCTGGGTACTCAGCCTGAACCATAGTAAATTGTTGGC-TCTGACCACTGCTGATATACGAAAATAGAACTTCACAT--------CTGTAACCGGTGGATCCCCTCCT 38 chr6_hla_hap2 106510 107519 chr20 4662034 4662900 + 14794 CTTTAGGTACCGAAGAATACCTCATAAATACTCTTTATCT--------GATCTAAGTACTAAAGATCTCAGCTTCCGCTCCAGGGATTTTTTCCCCCTAAGAAAGAAAGAGCACTTAGTATAACTTCTGTCAGAGAATCTACATACATGTACAGGGATACAGGCTTTATAAACATTGGAGTTCAGAAAGAAAAGAAAGGAGATAATGGGGAGGTCACTGGGTACATCCTCACATATGAGGAAGAAGGGCCAACACCACAGGTCCTTTGGAGGACATAACACAGGATCATCTAGGAGAGACCTTTTG------AATTCCCTTGACTCCCACA---AAGTTTTCAGAAAATCCTCGTTTTGTCTGGCATAAGTCAACATGATAAAGGGAAGTGCTGTATGGGGAATTTATTTTAGCATCCTTATTTCTAAATCCTCTAAAGACCCTGAGGAAATGTGATGCAAAGGTT--------TTATTGGTGGAGATTTGAAAAGAAATGGCCTGTATGGAAGTTCCTTACACAAACCTCATGGAGAGGGCAAGTACCAAGCTCCTTTTGTGGTGGAAATAACTTAGGATCCCGTGATAAAGATGGGCAATCTCTGAAGAAAACGTCACAATCTCTTAAGGGGC-ATTGCCTGGGCACGGTGTTAACAAAACT---CCCTATTTTCCTGACCTCGTAGTAGCTCAGCACCCACAATGTGCACTTGCGTCGGGTGTCCCCAGCCAAAGCCAGTGGGGAGCTCAGCACCATCAGTGTCACTGTCAGAGCTGCCATGCAGGAGCCTCCAGGGGGCTTCAGACACACCATGCTAAGGAGCATGACAGGTCCAGGGCCCAGAGGGGCAGTCAAGTCTCACTCAGCGAGAACTATGACCCTGCTCCACCCATATTCCAAATTATAGGGAGGAAGTTACTGATTTCCTTGCTCCTGGATTGGGTA-ATCTAGTGTTGGAGAATGAATCAGCGTCTGAGTTCAATAGCATCATCAGTTGCTGGTCAGAGATGCTGTATGAAGGTCCTTTTCTGAAAc TTTGAGGTACC-AAGAGCGCACCATCTGTGCTCCTTGTCTAGGAGGCAGATTCAAGCATTAAG--TTCCAGGGTTGGCTCTAGGG-----TGCCATCAACAGCAGAGAGAACCCTGACTACTTGCCATGACAG--------CATTCCAGCACGGGGATGAAGGTTTCATAAACACTGGGGTTCATGGAGAAGAGAAAAG-------------------------------------------------------CCACAGATCCCAGTGAGGACACAACCCAG--TCTTCTAGGACAGCCCCCCTGCTCCCCAATTCCCCCTAATCCCTCATGAAAACTTCAGGGAAATTTTCCATCT-------------TAACATTTTAGAGAG--GTTCTATACAGATC-CTTATTTTTGTGCCCTGTCTCCTTCA-CCTCTTAAGGCCTGTAGGAATTGTGATGTCAGGGTTGACCGTTCTCAT--GAGGAGG---GAAGGGACATGACC---ATTCGTGTGTCTCAAAGGGACATC-----------------TAAGACGCTTTTATA-CAGAAATAATGTGAGATTT-GTATGAGAGGTGGTCAA-------AGAAAAACTGACAAGTTTTTAAAAACCTATTG--TAGACAAAATG------AAGCTAGCCCCTTTCTCCCCCACCCC-CAGCAACTCAGAACGCGAGGCATGAACTTACGTCGGGGGTCCCTGACCAAAGCCACGGGAGGACTCAGCATTAACAGACTCAGGACCACAGCCGCCACACAGGGGTCTCTGGGGAGCCACAGACACACCATGCTGGAGGAGAGGAGAGGT-TGGTGGCCAGAGAGGCAGGCCAACCTGGCTGACTGAGGAGGGTGA-GGGACTCCACCCA-----------------------------------CTGGTGCTGGGTTGGGCACCTTCAGTGCTGGAGAACCAATCAGGAGCCGAGGGGGGC-GTAGCATCAGTTGCTGGTCAGAGGTGCAGAGTGAAGGTC--TTTCTGAAAC 39 chr6_hla_hap2 107520 107541 chr20 4681437 4681458 + 766 agaatttacttctttaaagaat ACAATCTGTTCATTAAAAGGAT 40 chr6_hla_hap2 111064 111580 chr20 4681801 4682269 + 8421 aAGGATTGTTTTAATTTAATACTTCATTGGTTTGATCCACTTACAAGTAAGATACTTTAATTGAGCCCCTATTGTTAGCCGGCTCTGTGCTGGTCAGTAATGTGTTCACAAGTTTGAGCCTTGTAAGAGCATTCATTTCTCACTTGACAAGACAACTGTTTGCAGGAGTGAGTGTGTGAGTGTGTTTAGGAATAAAGGAGATGGAGGGAACATGGTTGCAAATTTGGAGACTTTAATCTGATCCTTATTGTACCATATGTTAATGTTGTAGATTTCAGAAAATTATTTCATGTTTCACAGTTGAAATAAAGACACTATGTTCTTTCAGGTCTTTCAATACTGGAAAATGCTGTGATTCTCTGGACGCCTCAAGGAGCAGCAGCCCCGGGTATCTGATGAT-ATGACAGAATGACAGCTGTTGACTAGAGAGTTTAATCTCTACCTATTTACAGGTAGGGATGCCTTCAATAAGTTAAAGTAAACTGAAAGTTTGTGAATAATTTAATCTGAGTAAAAA AAGGATCATTTTATCTCCTTTTTAAAT--GCTGGATCCAGTTGCAGCTGAGACGCTTTAATCGGGCCTCGGAGCTGGGCTGGCTCTGGGATGGTCAGTCACTCACTCAGCAGTTAGAGCATTAGGGGAGCGTTTCCTCC-------ACAAG---GCTGTTGGGACAACTGTGTGTTTGAAACTATGTGGGAGCAAAGGAGAAGGAAG----ACGACTGTCAGCCAGGCACCTTTAGCCTGGCGCTTACTGCGCTTCGGTTTAATGGTGTAGATGTCG-------------------ACAG-TGATGGAAGTCCATTTTGG------GGAATTCTTAAAGCTG---AAGGCTGTGGCGCTGTGGGCGCCTGGAGAAACAGCCTCCCCTGGTAACTGATGACGAAGCCAGAATTCAGCCTCTTGATTGGACAGTAGAGTCTACACGCCTT--CGGTTAGGGA-AATTCTAACAAGACAATGGAAAATTAAGGTTAGT-AATGGTGTAGTCCTGACACAAG 41 chr6_hla_hap2 131490 131687 chr20 4647995 4648169 + 2512 tttaacatatgcactatctcacatacttatGACATATCCATGAAAACCATTATTCTATCGGGAAATAATCTTCACTTTTTCTTTTCTTTTTATTTTTTGTCCTTGGGGCCAAATGACCAGACGATTTTTAACTC---CATGTTTGAGA-AACATTTAATAATGTAATGTGTTTGTGGCACAGCAGGAGTACAGATGCATGGG TTCCATGTATGTATTACCTCACATATTTGTAAC---TAAAGGGAAGCCGTGTTTCAGTGGTG---TAATCTTTCCTTTCTGTTTTCT----GTATCTTGTCCTCAAAACT---------GCTTATTTTTGAGTTTTGCTTGTTTGAGGGAAAATGTGATAAGGCA------TTGTGTCACAGGATCGGCTCAGATGC--GCC 42 chr6_hla_hap2 131688 132224 chr20 4671887 4672403 + 10266 AGGCAGGAAGCATTAGGTAAAGGGGAGCACAAAACTTGGAAGATGAGG-GGCTGCCATTAATGCTGGGACTTCAGGCCAAAGGTACGAGCTGAGGCAGCCACAAGGGAGGACATTTTCTGCAGAGCTGCTGAACCAGTAGCAACCAGGTCCGGAGAAAGGTCTCTCTTGTGGAAGAATGAGAGCCAAGCGGGGAAGTGTTTCATCCTGCAAAGCTGG-------GGCAGAAGGTTCTTCCTTGAATGTGGTCATCTTCACTTCAGCTCAGGAATCCTGCAGAG-ACGCAAGAAAGTGTTGTTTTCAGACCTGGCTCTACTAACAGT--TTATTTTGCCCTCTTTCAAGGACTCAGATGAGAGCACTGCAGGAAGAAGAAAAACAAGTTCTGAAGTCTCCATGAGTCAATACTCCTGCAGAGCACAGGCCTTTTCTAAGTGGAGAGGAGGAGTTCTGGTGTAAATTGCCTGATCAGAAATTTGGATC--CAATGTCTTTGCTATTACTTCTGTCTCATGCCTTATTACCTCTACCATCATTCTAGGGAAAG AGGCAAAGGGCAAGGGACAAAAGGGAGCAGGAGAGGTGAGAGAGGGGGCTTCTGTCCCCGGAGCTGCAAGGTCTGGCCAGGGGT-------TAAACAGCCACAAGG-AGCACAGAT-CTCCAGGG-TGGAGAATCAGGAGGAGCCAGGTCCTGGAAGAGCACTGTCTC-TGGAGGAATGTAGGCCAAGCAGGACATGTTTTCA------AGACATGGTGACAGTGGGAGAACGC-CTTCCTTCAGCCTTGTCACCT-CACCTCAGTTCAGGAGTCCTGCAGAGCACAGGGGACAAGGGTGTTTCCAGACCTAACTC----AGCAGTGGCCTCTCTGACCACCTCCA--GCCTCTCCTGACAGCATGGCAGTGATCAGAGAGG-AACTTCTCATGCCCC---AAGTCAATGCTGCTTCAGACCACAGGCCTTTAGTAAGTGCAGGGAGCAAGGCTCAGTGCAATCTGCCTGGCCAGACCCTGGGATCTTCGTCTTCCTCGTTTTTCTGCCTGTGTC---CATCACCCCATCCCCCA-CACTGTAGGGAAAG 43 chr6_hla_hap2 132547 134259 chr20 4672404 4673943 + 48563 CAAATCTGTTTCTTAAAGAGGATGAAAAGGTATTACCTGTTGGCTGAAGTCCAGAGTGTCCTAGGAAAAAGAGAA---GATATACACTTAAAGGATATGGAAGCAAATCTGTCCTCCAACACAATGTCCCAGCTCCAGATCTCCCACCTGAGAGTTCTCTGACACCACAACCCACACCAGCCAGGGCAGAGAGGAGCAGAAACAGACCATGTGACCCATGAAGTGTGAAGTGTCTGTCACAGGATCCAGTGTAATTGTATTAGCTTTAGTTGCTCTTCCTTAATTTGCTCCACGATCTCAA--------CCAAAGCACCTATACCTGTTAATCTT----TCTGTTATCTCTGTAGGCCACAAGCTATTATGCTTTGACATAGCAACCAT-GCACTGATGATTTCTGGATTTGCAGAACATTGGAGGTCATTTGGGAGTAGAGAGGCTTTATCCAGGGCCATTCATATGCTGAGAACCAACTTCAGCAAAGCCATAGTTCCTCCTCCAGAAAAGCGTATGGAGACAGCCAGCTACCA-AAGGCTCCTCACCTTTCTGATTCCTGAAGTAGATGAACAGCCCGGCCCCAAGGAAGAGCAGGCCCAGCACGAAGCCCCCGACTCCACTCAGCATCTTGCTCTGTGCAGATTCAGACCGTGCTCCTGAGAGAGGAAGCCA--GGTTTAGTGATTTTTATCCCAAATGGAACCTCTTTAATTGACACCTTGAGATTCAGAGCTTTGAAAATGAGAAAGAAGGCTGCTCTGCAAGAACTAAAATAACTGACCATTTCT--------TGAGAAAGGTTTTCAAATCACACTGAACAGTTACAAGGTTCA-GTCATCAAACTCATTCAAATATTACAGCCTTGATGTAAGACAGGACTTCAACATCTgatgaacagaaagcctgagacccaatgaggttaagtagttgcctagagtgacagatctaataaaaggcggagctgagattggactccCCTCATGTCAGGAAGGTCCCTATACTTCTCCTCTTCTCAGATTACAACAAACGACTCAGAGCAACAGTACCAGAAACTCAGTCTCAGACCCAGAGGCAGGGCCTGGAGCCCACAGACAGCAGGTGACCCCGACTTGTGACATCATGGGGAGGTTCAAAAGAGGGACAGCCTCTCCTGCCTGGCAGGCATGACTGCTTCCCCAGGGGGTACAGGTGTTTCTAGAAAGTATTACAGGGCTACCCCCCAGTGACCTGTGCTGATGGAGATGAGAACGTGGAGCAAATGAAAATAGGATGTGGGATAGGAGAAGCCTGATACTCAGGGATTAGTAAAGTTCGCGTCTTGGTGGGTGAGAAATTTATGAAGTCAGAAAGCTGC--TCACTCCATTCCACTGTGAGAGGGCTCGTCAGGCTTGGGTGCTCCACTTGGCAGGTGTAAACCTCTCCACTCCGAGGAACTGTTTCCAGCATCACCAGGGTCTGGAAGGTCCAGTCTCCATTCTGGATCAGGCCTGTGGACACCACCCCAGTCTTCTCTTCCTGGCCGTTCCGGAACCACCTGACTTCAATGCTGCCTGGATAGAAACCATTCACAGAGCAGACCAGGAGGTTGTGGTGCTGCAGGGGCTGGGTCTTTGCAGGATACACAGTCACCTCAGGATAGACT--AGGAGAAAACAAGGTAGAGGGAATAAGTCATGCAGACAGAGTAAGTCTCCTTGTTTAGCTTTTTGTCTGCTTCTCTGTAAACCTAGGCT CAGATATGTCTCTGAGAGAAGACTGAAGAGCATTACCTGTTGGCTGAAGTCCAGACTGTCCTAGAAAAGAGAGAATAAAATAGATGCTTACATG-TGTGGAGGCAGATCTGTCCCCAGACACATTCCCCCAGACTCTGAGCTGCCACATGAGATCCCTCTGGTAACAACACCCACAGCACACAGGACCAAGAGGAGCATGGGCAGAGAACGGAGTTCAGGGAGCTT-------CAGTCACCAGCCC----------------------ATAGCTCTTCCCCAGTCTTCCTC-TGTTCTCAGGCTCATGCCAGAATCACCT--------TAACTTTCACATGTGTTATTTCCTCAGGGTTCAATCAA---------------GTAACTACAGGACTGTTGCTTTCACAGTCCATGGAA-ACCTGAGGTCA-----------------------CAGGGCCAACAGCATCCTGAGAAC----------AAAGCCATGGCTCTTCC--CTGAAATGC-TATGGAGTTG--TGGCCCTCACAGGGCTCCTTACCTTTCTGGTTCCTGAAGTAGACGAACAGCCCGGCTCCCAGGAAGAGCAGACCCAGCACGATGCCCCCGACTCCACTCATCTTCTTATTTTGTGCAGACGTGGACTGTGCTTCTGAGAAGGGAAGCCAAAGGTTTGGAGAGGTTTAGCTCAAATGCCATGTCCACTAAGGAC-CCATGAGACTCAGGGCTTTGAGACCATGGAAGAAGTGTGTTCTAGAAGAGCTGGAAT---TGAACACTCCTGGTCATGTTGAGAAA-----CCAAAT-----------ATAAAGAGGCTCACACCATGAAGAGCCTT-AAATATGGCCGCCCTGA-----------------------GCTGAGCTGAGAG----GAAGCCACTGAGCTCTGGGAGT-------------------AAGCAAAGGCAGAGTTGTGACTATGTGTCTCTGAGGTCAGCCATGACCCTGCACTACTCCTTGTCCATCGCCATCAC-------------CAACAGCAGCAGAAACACAACCC---AGCCAGAGGCAGAGGCTGCAGCC-AGAGCCAAGAAGATTCCAGGACCTGTGATGTCACTGGCAGGCTCAGATGAG-----------TCTGT---GGGGGCATAACTGCTTCCC-AGGGGGCAAAAGTGCTTGTAGAC-GTGTTGCA---CTCCTACCCTGTGAGCCATACAGAAAGACTGGACAGCACAAAACTAGT--AGATAGAGTGTGTGGGCGGAGAAAGCTGACAGGCAGGGCTAAGCCACGCCTCCTCCCTGGTGGGAGGGCA-TTCACAGAGTCTGGAAGTTACACTCACTCCACTCGACTCTGACAGGGCTGGTCAGGCTGGGATGCTCCACCTGGCAGGTATAAACCTCTCCACCTTGAGGAACCATCTCCAGCATCACCAACAACTGGAAGGTCCAGTCTCCATTTGGGATCAGGCCAGTGGACACGAGTCCATCCTTTTCTTCCTCGCCATTCCGGAACCATCTGACTTCAACGCTGCCAGGGTAGAAGTCACTCACAGAGCAGACCAGGAGGTTGTGGTGTTTCAGGGGCTGCGTCTTTGAAGGGTACACAGTCACCTTGGGTTCAACTAGAGGAGAAAGAGAGGT---GAGGAGGAGCCATGAGGGCAGA-CCTGTCTTCCCCGTGGGCTGCCTGCCTGC--CTCCATCCACCCAGGCT 44 chr6_hla_hap2 134656 134761 chr20 4673547 4673649 + 3600 ATTTATGAGGTCAGAAAGCTTC--TCACTCCATTCTACTGTGAGAGGGCTCGTCACACTTGGGTTCTCCACTTGGCACCTATTTATCATCCTTGTACACCTTGAGAGA ATTCACAGAGTCTGGAAGTTACACTCACTCCACTCGACTCTGACAGGGCTGGTCAGGCTGGGATGCTCCACCTGGCAGGTAT-----AAACCTCTCCACCTTGAGGAA 45 chr6_hla_hap2 137526 137914 chr20 4676989 4677370 + 17457 ctctcacacacacacacacacacacacacacacacacacacacacacacTCAGATTC---TCCGCTCACAGGGACTCAGGCCCCGCCCC-GCGCCGCGCTCACCTCGCCGCTGCACTGTGAAGCTCTCACCAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCACCGCGGCCCGCTTCTGCTCCAGGAGGTCCTTCTGGCTGTTCCAGTACTCGGCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGTACTCCCCCACGTCGCTGTCGAAGCGCACGTACTCCTCTTGGTGATAGAAGTATCTGTCCAGGAACCGCACCCGCTCCGTCCCGTTGAAGAAATGACACTCATGTTTAACCTGCTCCAAGAAACGTGCTGGGGGGACAAGAACGATC CTCCTGCGCACACGCGCACCCCCGCCCTGCCCCGCCCTCCCAGTCCCACCTGGGCGTGGTTCCGCCC-------CTCA---CCCGCCCCTGTGCTGT-CTCACCTGTCCGCGGCACAAGGAATCTATCAGAGATCTCGTAGTTGTGTCTGCAGATCGTGTCCACCGCGGCCCTCTCCCGCTCTATGTACTCCTTCTGTTTGTTATAGTACTCGGTGTCCCGCCGCCCCAGCTCGGTCACCGCGCGGAACTCGCCCACGTCGCTGTCGAAGCGCGTGTACTCCTCCCGGTTGTAGATGTATCTGACCAGAAGCCGTACGCGCTGCGTCCCGTTGTAAAAATAACACTCGGATTTATACTGTTCCAAAAACCGTGCTGTGGAGACAAGAATTATC 46 chr6_hla_hap2 137915 137939 chr20 4651986 4652008 + 469 CGGTTACAGAAGCGGCCTCCGGGGA TTATTAC--AAGCTGTCTGTGAGGA 47 chr6_hla_hap2 138054 138124 chr20 4760762 4760832 + 2064 CCCAAGGCTTTTGGGACCCCCTCCCTGCCTCCAGCCTGTTCTGGAGACCTCCAGGCAGGAGCTGGAGGAGG CCAAAGATTTGTACCACCACCACCCAGCCCCCTGCTTGTTCTGTGTACCCCAGAAGAGGATCTACGAAAGG 48 chr6_hla_hap2 138149 138265 chr20 4652536 4652638 + 1251 CCGCCTCCTCCTGGGAGCCTCCACCCCAAAGGCACTTTGCTCCTTCTCTCAACCCTTTACCATTTAAAGGCTTTACCCTTTCCTTAAACAGCACGCAC---CGCTTTCATCCTGTGAACA CCTTCTGATCCTG-----CTCCATC----AACCACATTCTGCCTTATCTCA-----TGGCCAC---AGGTCTTCTCCCTCACCTTAAACAGCACCCATGTAGAATATTATTCTATAAATC 49 chr6_hla_hap2 138266 138555 chr20 4678731 4678958 + 2625 CTTCCTTAGTGATGACCTTGTGCCAGGCCTGCGCTGCCTCTAGGAATCCAAACACGGGAAAACAGACCTCTCCACTCCGCTGGGGGAGCTTTAAGAGCAGTGAAAGTGATGGCCAAAAACCAAACACACAAGAGCTTAGACAGGAATGAGAAATTTCAGAAGTGTGGAGTTCTAGAACAGAGAATAATAGGATGATCTCAATTCCTTTAGGGTGCCAGAGAAGAGTGACAGTTACAGATGTGACTTAACAAGTTAAGCAGGTGTGAGCCAGGGGGC-AGAGTGGAGCCTGT CTCCCTCAGTTCCTGCCCTGTGC-AGGACGACGCTGCCCTCGGGAATCCAAAGA-GGAGAAACAGACGCCTCC-CTCCA-TGTCAGAGCTT--AAAACTGTGAAGGTG------------------CGGAAGAAGTAGGAGAGG-----------------GGGTGGGGTTCTAT---------TAACCGGAAG---------CCTT--GAGTGACAGGAGGGGCGGAGAAGCTCCCTGGGGACTGGACCTGTCA--CAGACGTGAGCCAGAAGAAGAGGGTGGTGACTGT 50 chr6_hla_hap2 138659 139031 chr20 4679044 4679408 + 3682 taaagcagagaggctgaggggaaggagggtaaaaggttagattggagaaatcacaagaagccaggtgttgaaaagcctcgtgagtggtgttaggattttggatttactaaagacaatgggaaagtattgaagagttttaaggagaataaaactatgatcCTCGTAAATGTCCACAAACTTTCAGTTGCATTTCTAAATCCACAAAGCTCAGAAATTCAGTTAAAAGAAATTTGTTCCCAAAACTCATTTGGCAAATCTCATCTGATAAGGGTAAGTGGTCAAAG-GTGTCTCAGAGCTCT---------------TATTGGTGACATGTGCTTCTGTAGTTTCAATACATATAAACATATGTGCATATATGTG----TGTAAATATACaccta CAGAGCACAGGGCATGAGGG--CTGCGGGTGAGAGAAGAGACTTTGGATAGCAAGAGCAGCCCCA-ACTCAAAAGCCTTGGAGTTGATTGTAGCTTTCTGGGTTTTACTAGGA-----GGAAACTACTGGAGAAGTTTCTGGAAATTGAGACCTTAATCCCAATGCTGAGCCACGATCTCTTATCTGAATTAC-AGATGCAGATAATGCACAAACC--------AGACATTTTT-----AAAGTCAGATGTCAAATGCGACC---CCAGGGAAGAAAGTTAGGGCGCATCTCCCCGCTCTGGGGGAGGGGAGGTGTGTCAGTTACGGGAGCTTCTTTAGTTTCAATAGAGGAAGGCACAT---CAGATGTGTGCCTTTTCAACTTTACACTTA 51 chr6_hla_hap2 144992 145600 chr20 4661672 4662165 + 4659 AATGATGACAACATAGCTGGGGAAAAAT-AGAGAGAAACTGGAGGTAGAGATAAGCAGACATGGCTAATTAAGGAAAGCTGAGGGCATGATGGGTGAACCTATGAAATTTAGGACAAGACCCCAGTAAGACAAGGAGTTTCCAGGACTTCTTCATTGACTTTCAGCCCTATTAGATGTGAACAATGTCCACGTCGTCTCGGTAACCCCACACAGAGTATAtagtttgaacattattaattttctggtatttgactatttttgacttacaaaaatagaatttcatataatttatcctaTGTTAGTTGAATCTCTTCTGTCATGTCTAGTTAGAGCATGCAGGAGAAACAAGTATAGAAAGGTTATAAAAGATTAATAATAAGCACTAATCTGGGCCAGTTTTTCAGAGGATGCCTTAAGTTCTTGAGGAGTATCCAAGTATTCAGGGGTCTGAGAGACCGATCAAGAGGAGGCACCAATGAATACCTCATAAATGGTCTTTACCTGTAGGGTGACTCCAAGTACTAAAGATGTCAGTTTCAGATCCAGGGATTTTTCCCCATAAGAAAGAAAGAGCACTAAGTATAACTTCTGTCAGAGAACCTACATATG AAAGACAACAACGTGACCCTGGAAAAATCAAAGATAAATTGTGAGGACCCACAAGTCCACACGGCTAATTGAGAATAG---AAGGTGAGCGGTGGAACCCTACAAACCTTGGGGAAG---CCCTGCCAAACCAGAGGCTTT----ATTTCCTGACTGTCTTCTAACCCCCGGAGACGTTAGCAGCCTTCACGCTGTCT--GCAACCCTGCTCTGGGTACTCAGCCTGAACCATAGTAAATTGTTGGC-TCTGACCACTGCTGATATACGAAAATAGAACTTCACAT--------CTGTAACCGGTGGATCCCCTCCTTTACCCTCAG---------GCAGGA------------------------------------------------------------------ATGCAGCTGGTGCTTGGGGCACCGTGAAGGGTT------TCAGAGGAACTGTCCAATTTGAGGTACCAA-GAGCGCACCATCTGTGCTCCTTGTCTAGGAGGCAGATTCAAGCATTAAG--TTCCAGGGTTGGCTCTAGGG------TGCCATCAACAGCAGAGAGAACCCTGACTACTTGCCATGACAGCAT-----TCCA 52 chr6_hla_hap2 145601 145777 chr20 50705843 50706052 - 1306 CTACAGGGATACAGGCTTTATAAACACTGGAGTTCAGAAAAAAAAGAAAGGAAACAATGGGGAGGCCACTGGGTACATCCTCACATATG---AGGAAGAGGGGCCAACACCACAGGTCCTGTGGAGGACAACACAGGATCG---------------------TCTAGGA----------GAGACCCTTTGA-------------------ATTCCTTTGACTCCCACAAA CTGCGTGGGAACAGGCTGCACAAGCCCTGGCATCAGGAAGAGAGAAAGAGGAAGCC------------CTGGGTTCAGCCTCACAGGTGGCCAGGCAGCGG--------CCTCACAACCTACAGAGGATGCACTCGGATCTCCCTGCGATGCCCTCACTGACTCTATGACACTTCCACAGAAACCTTCTGATTAGATCAATATTTTACTTATTTTTTTTACTAAAATGAA 53 chr6_hla_hap2 145778 146473 chr20 4680765 4681434 + 19469 ATTTTCAAAACAAAACCTTGTTTCGTCTGACATAAGTCAACATGATAAAGGGAAGTGCTGTATGAGGAATTTATTTTAGCATCCTTATTTCTAAATCCTCTAAAGACCCTGAGGACATGTGATGCAA-----AGGTTTTATTGGTAGAGATTTAAAGTAAAACATGGCC--TGTACAAAGGCCCTTTACACAGTCTCATGAATAGGGCAAGTAGCC-AAGTTCCATTTGTGGTGGAAATAATTTGGGATCCATATGATAAAGATGGGCAATCCCTGAAGAAAATGTCACACTTTCTTAAGGGACATGGCCTGGGCAC----AATGTTAACACAACTCCCTTTTTTCCCCACCCCATAGTAGGTCAGCACCCACAATGTGCACTTACGTCGGGTGTCCCCAGCCAAAGCCAGTGGGGAGCTCAGCACCATCAGTGTCACTGTCAGAGCTGCCATGCAGGAGCCTCCAGGGAACTTCAGACACACCATGCTGGAGAACAGGACAGGACCAGGGGCCAGAGGAGCAGGTGAGTCTCACTCAGGGAGAACTATGACCC--CTCTCCACCCACATTCCAAATTATAGGGAAGAAGTTACTGATTT----CCTTGCTCGTGGATTGGGTAA-TCTAGTGTTGGAGAACGAATCAGCATCTGAGTACAATAGCATCATCAGTCGCTGGTCAGAGATGCTGTATGAAGGTCCTTTTCTGAAAC ATTTTTAAAGAGAGGCCTT--TTTGTCTGGCATAACTCAACACAATGAAGACAGGGCCTGTCC-CGGAAGTTAATTTAACATCATGATTTATCGATCTTCCCGGGGCCCTAAGGGAATATGACACAAGGCATAGATTTTACTGGAAGAAACTTGAA--AAGCAATGGCAGATACACAAGGGCCTCTCACACAGGTCTGAGAGCA---CAAACATCCCGACTTCTGTCTGCAG---ACATAGTTTAGAGTTCATGTGA--AGACTGTGAGGTCAC---AGAAGATATCA-ATAGTTTCAAGGGACTTGGCCCAGACAGTAAGGAAGTTAGCGC------CTTCTTCCCCCCATCCTCAGCAGCCCAGCACCTGGGGTATGCACTTACGCGTGGGGTCTCTGACCAACGCCACCGGAGGGCTCAGCACTGTTAGCAACAGGATCACAGCTGCCACACAGGAATCTCTGGCGAGC------CACACCATGCTGGAGGAGAGGAGAGA--CAGGAGTCAGAGGAGAAGACAAGCTTCA---------GACTGTAACTTTATTCTCTTTACTCATTGCTA-----AGAGAAGAACCAGTGGATTCACTGCTTTGCCACTGGATTGGGTAAGGCCAGTGCCGGGGAGCCAATCAGCAGCAAAGGAGACCAGCATCATCAGTTGCTAGTTAGAGATTCAGTATGAAGGTCCCTTTCTGAAAC 54 chr6_hla_hap2 146474 147071 chr20 4681766 4682333 + 8927 AATTTCCT---------------------TCTTTAAAGGATTGTTTTAATTTAGTACTTGAAAGGTTTGAACCAGTTGCGTGTAAAACACCTTAATTGTGTCCCTATTGTTAGCCAGCTCTGTGCTGGTCAGTGATGTGTTCACAAATTTGAGCCTTGTAAGAGCATTCATTTCCCACTTGACAAGAGAATTGTTTGCAGGAGTGAGTGTGTGAGTGTGCTTAGGAGTAAAGGAGATGgagggaacatggttgcaaatcaggagacttttaatctggtccttattgcaccatatcttactgttgtagacttgggaaaattacttcatgtctcacagttaaaatgaaggcaccgtgatctttcaggtctttcaatactggaaaatgctgtgattctgtgGATGCCTCAAGGAGCAGCAGCCACGAGTATCTGTTGAT-ATGACAGAATGATAGCTGTTGACTAGCGAGTTTAATCTGTACCTATTTACAGGTAGAGATTCTTTAGTAAGTTAAAGGAAATGGAAAGTTTGTTAATAATTTAATCTGAGTAAAAAGGGTTTTTTCAAGTGTATCTCCTGATGCTGTCCCCAAGTTTAGTGGCAGCTCCAGAACACACACAGG AACTTCTTAGGGGATACATTATACATTGCTTTTTAAAGGATCATTTTATCTCCTT--TTTAAATGCTGGATCCAGTTGCAGCTGAGACGCTTTAATCGGGCCTCGGAGCTGGGCTGGCTCTGGGATGGTCAGTCACTCACTCAGCAGTTAGAGCATTAGGGGAGCGTTTCCTCC-------ACAAG---GCTGTTGGGACAACTGTGTGTTTGAAACTATGTGGGAGCAAAGGAGAAGGAAG----ACGACTGTCAGCCAGGC-ACCTTTAGCCTGGCGCTTACTGCGCTTCGGTTTAATGGTGTAGATGTCG-------------------ACAGT---GATGGAAGTCC----ATTTTGGGGAATTCTTAAAGCTG---AAGGCTGTGGCGCTGTGGGCGCCTGGAGAAACAGCCTCCCCTGGTAACTGATGACGAAGCCAGAATTCAGCCTCTTGATTGGACAGTAGAGTCTACACGCCTT--CGGTTAGGGAAATTCTAACAAGACAATGGAAAATTAAGGTTAG-TAATGGTGTAGTCCTGACACAAGGGGCATTTCCAGCCTGATCCCCGAA--ATGTTACTGATTCCAGTGGC-GCCCCCCAAAGCACAGAGG