##maf version=1 scoring=multiz.v7 # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/danRer1/chr7_random.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3canFam1galGal2fr1/chr7_random.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/fr1/chr7_random.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3canFam1galGal2/chr7_random.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/galGal2/chr7_random.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3canFam1/chr7_random.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/canFam1/chr7_random.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3/chr7_random.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/rn3/chr7_random.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5/chr7_random.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/mm5/chr7_random.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1/chr7_random.maf - a score=6158.0 s hg17.chr7_random 0 65 + 778964 gatcatgctattgcactccagcctgggcgacagagtgaaactccatctcagaaaaaataaataaa s panTro1.chr6 161363102 65 + 161576975 gatcatgctattgcactccagcctgggcgacagagtgaaactccatctcagaaaaaataaataaa a score=33240.0 s hg17.chr7_random 65 217 + 778964 TGAGAGGATCAGCCAACGCATCAGCAAATGTCAGCCGGACGGTTTAATTTCCACTCATCCCACGACACGAGGCAACC-CTCAAACACACAGGTCCTGGCCATGAAGCCTTC--AGGGAATCACAGGACTGGGTGCT-GACCCAGAAAACTCTACAAAGCTTTGTGACCAAAGAGGTTCGAGTCCCAAGTCCCCTTCAGGAAGAGCTGCAGTCTGCTCA--------------------------------TGt s panTro1.chr6 161363167 249 + 161576975 TGAGAGGATCAGCCAACGCATCAGCAAATGTCAGCTGGATGGTTTAATTTCCACTCATCCCATGACACGAGGCAACC-CTCAAACACACAGGTCCTGGCCATGAAGCCTTC--AGGGAATCACAGGACTGGGTGCT-GACCCAGAAAACTCTACAAAGCTTTGTGACCAAAGAGGTTCGAGTCCCAAGTCCCCTTCAGGAAGAGCTGCAGTCTGCTCAAGTCCCCTTCAGGAAGAGCTGCAGTCTGCTCATGt s canFam1.chr16 22825451 220 + 60307850 TAAAAGAACCAGCTGATGCATCAGCAAACAACAACCAGACAGCCTGTCTCTCCCTCAT-CCATGCCACAAGGCAACCACTCAAAACCAGAGGCTCTGGCCATGGGGCATTTCGAGGCCATCCCTGGAACTGGTGCTCGATCCAGAAAACTCTAGAAAGCCTTGCAACTGAACAGCTCATATCTTCAACTCCTTGTCAAGAAAGGCCATGACCTGCCCA--------------------------------CAT a score=35767.0 s hg17.chr7_random 282 386 + 778964 gtctaagtttgcctctgttgcttataacaacataccggaaactgggtaaattataaaggaaaggcatttatttctcacagttatgaggctggataaatccagggtcgagtggccacaatgg------ctttcttgctggaggggacttttcagggttcccaggtggcacaggccatcgtgtagtgagggggctgagcgtgttggcccaggtctctcttcttcttataaaacctatcccttgaaaacccactaatctattaacggattaacccacttacgagggcagagctttcatgacccaatcacctcttcaaggcccgtctctcaatactactacattgaggattgttttaacctaagtattgaaggggataaatattcaaaccatagca s panTro1.chr6 161363416 392 + 161576975 gtctaagtttgcctctgttgcttataacaacataccggaaactgggtaaattataaaggaaaggcatttatttctcacagttatgaggctggataaatccagggtcgagtggccacaatggtgagggctttcttgctggcggggacttttcagggttcccaggtggcacaggccatcgtgtagtgagggggctgagcgtgttggcccaggtctctcttcttcttataaaacctatcccttgaaaacccactaatctattaacggattaacccacttacgagggcagagctttcatgacccaatcacctcttcaaggcccgtctctcaatactactacgttgaggattgttttaacctaagtattgaaggggataaatattcaaaccatagca a score=5177.0 s hg17.chr7_random 668 44 + 778964 AATCAAAAACATGTGAGAGTCGAAGCCACCAAGAATCTGACAGG s panTro1.chr6 161363808 44 + 161576975 AATCAAAAACATGTGAGGGTCGAAGCCACCAAGAATCTGACAGG s canFam1.chr16 22825671 28 + 60307850 GATTGAA---------------AAGCCACC-AGAATCTGTGAGG a score=62246.0 s hg17.chr7_random 712 661 + 778964 TTGCATGAAAGCGCACATTAGTGTCCATCCACAGTGGCCATGTACCCAAGACAACCACTGCTGCCCAGGAAGAAGCTGAGAGGTCACTGGCCACACACTGAGGAGCTGTGTGTGTGGTGAGCTGCATGCTGGCTGTGGGTTTCGTTTCCACTGA-----CCCAGGTCTCTGAGCCTCTCAAGAACCCCCGCGTCAACACAGTCCTTGTGGAAGAACAGGCTGAGCCCAGGAAAAGGAGGAGGCCCCGACAGACAACATGCTGTAAAAACCATGGCTCATAAGTAAAGAATGTGAAATGGGTATATAAATATAAAATCATAAAAAATGAGGCCAGCAGGAATTGTTACTGCTGTGGCCATGTGGAGAAGCAGCCGCCACTCGTCACCAACCCCCACCAGCAGGACAGGAAGCAGCCAGGTTCTGAGGACACCCAGGCATACCTGGGGAGGAGGAGGCAGGTGTGAGAGCCCAAGGATGGAGGAGACAGAGATCAAGGGAGGGGAGTGGAGAAGGCAGAGAGGTATGCACCAGGAGAGGCCATCGACTGGTGGGAGCTTGCTGTGTCTGGGGTCACCAGCACCAGACTGAGCCCTGACCTCAGCAGGAGGGGTGGGGAGGAAGCTGACTCTGACCCCATCAGCAGCAGCTCACCTCAAGGGGCCGGCC s panTro1.chr6 161363852 666 + 161576975 TTGCATGAAAGCGCACATTAGTGTCCATCCACAGTGGCCATGTACCCAAGACAACCACTGCTGCCCAGGAAGAAGCTGAGAGGTCACTGGCCACACACTGAGGAGCTGTGTGTGTGGTGAGCTGCATGCTGGCTGTGGGTTTCGTTTCCACTGAGCCAGCCCAGGTCTCTGAGCCTCTCAAGAACCCCCGCGTCAACACAGTCCTTGTGGAAGAACAGGCTGAGCCCAGGAAAAGGAGGAGGCCCCGACAGACAACATGCTGTAAAAACCATGGCTCGTAAGTAAAGAATGTGAAATGGGTATATAAATATAAAATCATAAAAAATGAGGCCAGCAGGAATTGTTACTGCTGTGGCCATGTGGAGAAGCAGCCGCCACTCGTCACCAACCCCCACCAGCAGGACAGGAAGCAGCCAGGTTCTGAGGACACCCAGGCATACCTGGGGAGGAGGAGGCAGGTGTGAGAGCCCAAGGATGGAGGAGACAGAGATCAAGGGAGGGGAGTGGAGAAGGCAGAGAGGTATGCACCAGGAGAGGCCATCGACTGGTGGGAGCTTGCTGTGTCTCCGGTCACCAGCACCAGACTGAGCCCTGACCTCAGCAGGAGGGGTGGGGAGGAAGCCGACTCTGACCCCATCAGCAGCAGCTCACCTCAAGGGGCCGGCC a score=33649.0 s hg17.chr7_random 1373 238 + 778964 GCCCACCCTGAATGGCTTCCTGTGACCCACTGTGGTCACCCAGGCAACAGCTCCGTTCTTCCCAGACAGG---AGAAGCCATTAGTGCACTTCTGAGTGGCCCACTCCTTCACCTGCCAGAAACTGACTTCTCAACCATAATTCCCTTTATGATTCTTAAGCAT-----TTTATTCAGGGTAAAAATTAATTCAGTGAGATTTGTTTCCTATAAAAAGTAAATATAAAGACATTACTTTAAAAAAA s panTro1.chr6 161364518 238 + 161576975 GCCCACCCCGAATGGCTTCCTGTGGCCCACTGTGGTCACCCAGGCAACAGCTCTGTTCTTCCCAGACAGG---AGAAGCCATTAGTGCACTTCTGAGTGGCTCACTCCTTCACCTGCCAGGAACTGACTTCTCAACCATAATTCCCTTTATGATTCTTAAGCAT-----TTTATTCAGGGTAAAAATTAATTCAGTGAGATTTGTTTCCTATAAAAAGTAAATATAAAGACATTACTTTAAAAAAA s canFam1.chr16 22825737 236 + 60307850 GTCTGCTTTGAGTTCCCTCCTGTGATTAACAGT-----CTCAGGCTACAGCTTTCTTCTT-CTAAACACAATCAGCATCCACTGAGGCA--TCTAGGTGTGCAGATGCCCTATCTGCTTGAAACTGATGTTGTGTTTGTGATTCCTGTTTGGAGTC-TAAACATTAAAATTAATTCAGAGT-AGAATTTTTTCAGAGAGATTCATTTCCTGAAAAAAGTAAATTTAAAGTCAATACTTTCAGAAAA a score=28391.0 s hg17.chr7_random 1611 306 + 778964 AA-TAgagacagcttcttgctctgttgtctgtgttgtccaggctggagtgcagtggtgccatcatggctcactgcagccttgaactgggctcaagcaatcctcctgcctcagcctcctgagaagctgggactataggtgtgtgtcaccacaccaggttaagttaaaaagtttttttggtgtcttgctatgttaatcaggcttgtcttgaactcctgccttcaagttaccctcctgcctcgatctcccaaagtgctggggttacaggcatgagcccattgcaccaggcATAAAGACATTACTTTAAGA s panTro1.chr6 161364756 307 + 161576975 AAATAgagacagcttcttgctctgttgtctgtgttgtccaggctggagtgcagtggtgccatcgtggctcactgcagccttgaactgggctcaagcaatcctcctgcctcagcctcctgagaagctgggactataggtgtgtgccaccacaccaggttaagttaaaaagtttttttggtgtcttgctatattaatcaggcttgtcttgaactcctgccttcaagttaccctcctgcctcgatctcccaaagtgctggggttacaggcatgagcccattgcaccaggcATAAAGACATTACTTTAAGA a score=87653.0 s hg17.chr7_random 1917 686 + 778964 CTGTCCCAACCAATAAACAGTTATTAATTATTTAAATATCCAAGACGAGG-----AAATGACCTTAAAGAGTTTAGAAAATGGAAGAAATCTAGTC--------------AAAAAGATCC--------------AAAAGAAAAAAGTGACCAGGCTGTTTATCTCATCAGTCCAAAAAGTTATTTGGACTAGAACAAGGACCTACTTATATCAGAAAGAAAATGAAAAGGAAAGATATAGGCACCTTTTAA------------------------------GATACAACTGACGTCTACACCATCAATATTGACATCAGA-GGAACCTACT--TCTCTGCTCTCTGCCGTGGA-TGCCAAAACTGCTCGGTTCAGACCTTCTGGAGCATAACACAGTGATTATTCATTTAGTTTCTTAGAACAGGTCTGCCTTGAATATCTGCTGAGGACCACGAACAG-----------CGAGCTCCCACC-----AGAGCTCCAGCTCCCGCAGCAGAGGGCAGCATCGCAGGGCAGCTGA----GC-CGAGACCACAGAGCG----AGGTG-GAATGCTGCAGCCACACAGG-GCCTTGGAC-------CCTCCGAGGAGGGTCAG-----------------TGCCCACATGACGCTGTGAGCAAGAACCCATTTGTGGACACTGTCTGGTTTCCTC--TGACAAAGAGAAACAAGCAAGAAGGGGTTAGGTGTAAAATGGGTTGTGATTAACCATATCCCACATGACACAACCGACACAGGAATGAGAAAGTGGGCTAAAATAGTGTCATT s panTro1.chr6 161365063 686 + 161576975 CTGTCCCAACCAATAAACAGTTATTAATTATTTAAATATCCAAGACGAGG-----AAATGACCTTAAAGAGTTTAGAAAATGGAAGAAATCTAGTC--------------AAAAAGATCC--------------AAAAGAAAAAAGTGACCAGGCTGTTTATCTCATCAGTCCAAAAAGTTATTTGGACTAGAACAAGGACCTACTTATATCAGAAAGAAAATGAAAAGGAAAGATATAGGCACCTTTTAA------------------------------GATACAACTGACGTCTACACCATCAATATCGACATCAGA-GGAACCTACT--TCTCTGCTCTCTGCCGTGGA-TGCCAAAACTGCTCGGTTCAGACCTTCTGGAGCATAACACAGTGATTATTCATTTACTTTCTTATAACAGGTCTGCCTTGAACATCTGCTGAGGACCACGAACAG-----------CGAGCTCCCACC-----AGAGCTCCAGCTCCCGCAGCAGAGGGCAGCATCGCAGGGCAGCTGA----GC-CGAGACCACAGAGCG----AGGTG-GAATGCTGCAGCCACACAGG-GCCTTGGAC-------CCTCCGAGGAGGGTCAG-----------------TGCCCACATGACGCTGTGAGCAAGAACCCATTTGTGGACACTGTCTGGTTTCCTC--TGACAAAGAGAAACAAGCAAGAAAGGGCTAGGTGTAAAAAGGGTTGTGATTAACCATATTCCACATGACACAACCATCACAGGAATGAGAAAGTGGGCTAAAATAGTGTCATT s canFam1.chr16 22825973 747 + 60307850 CTG--------AATAAATAATTACTGGTTATTTAAATATCCAATATTAGGCTACTAGCTGATTTTAAGGAGTTCAG-AATTAGGAGAAATCTAGttaaaaaaaaaatttaaaaaaGACCCAGTCCTAAGGAAAAAAAAAAAAAAACAGATCAGGCTGTTGAACTTATCAGCCCACAGAGATATTTGGACTAGAACAAGGATCTGCTTACATCAGAGGGAAATTGAAAGGGGaagaaagaaaaa------aaaaaaagaaaaaaaaaaaaaaaaagaaaGGGGAAGAAACAGGCTCTGGCATCACC----CTGACGTCAGAGGGGAGCTGCTGACCCCATGGCTATGCCGTGAACTTCCAGAACAGCTCCCTTCAGACCCACGTGAATAGAAGATGGTGGGTACTCTGTT----------TACACATCTAC--TGCGTGTCTGCTGGGGACCTGGAATAGAAAGCCAGGAACCAGCGCTCACTCTTCAAGAGCTCATGCTCC----ACAGGGAGAAGGACAATCAGACAGTGGATGATGCACGTGACAGCAGGGCTCCGCAGGTGCCACCGTGGCAG--AGACAGGCATCTCTAACAGCTGGGCATCCAGGAGGAGTTTGCAGACAAGGAGACGTCTTCCCCACTTGAT----TGAG--GGAACTGATTCATGGA-ACTGTCTAGTTCCCTTTGTGATGAAAAGGGGCAAG---AAAAAGCCTGGATGTAAA--------CGACT---TATATTCTATGTGACACAACCACCGCAGAAATAAGAAAGC-TGCTAAAACGATGCTATC a score=857.0 s hg17.chr7_random 2603 25 + 778964 TGGTCATAGGAGATGGTGATTCCCA s panTro1.chr6 161365749 25 + 161576975 TGGTCATAGGAGATGGTGATTCCCA s mm5.chr12 4003178 22 - 115071072 TGGTCATGAGAAAC--TGACT-TAA s canFam1.chr16 22826720 9 + 60307850 TGGTGATGA---------------- a score=93461.0 s hg17.chr7_random 2628 511 + 778964 TTTTAT-ATGAGTGGCTTGAAGTTAACCCTCAAATGCTGGTGAAATATTTTATTCCCACCAACAAA-ACGGtcactagaacattgtttgtagtagcaaaatactgtcggctacctaaaagtccatggacctgggagagactaaagaaacacattagaatactatagcagctcttaaagagaatataagaacaaatgcaaaacagttgccaaatacattgttacactgaaatacaaaacaga-aaagaaaagcaagatgccgagcacatgtgtgaagagtatgccagcttCCACGTGTCTGGAAGGAAAAGCGGGGTCTACCCACGTGTGGAC-GTGTGCGCACCCC-------------------AACTCTCCAG---GGGCAACTTGGGGCTGGCAGCAGTGAAGTCTGTAGAGACATTTCCCATTATATACATTTTTGAACAGAATTTT----TCTATGTGCATATTAGATATATATATGTATATCACTTAATTTCTACTGTGAGAATTTTCATTAATTTGTTCAGCAAAAGCT-TTTAA- s panTro1.chr6 161365774 511 + 161576975 TTTTAT-ATGAGTGGCTTGAAGTTAACCCTCAAATGCTGGTGAAATATTTTATTCCCACCAACAAA-ACGGtcactagaacattgtttgtagtagcaaaatactgtcggctacctaaaagtccatggacctgggagagactaaagaaacacattagaatactatagcagctcttaaagagaatataagaacaaatgcaaaacagttgccaaatacattgttacactgaaatacaaaacaga-aaagaaaagcaagatgccgagcacatgtgtgaagagtatgccagcttCCACGTGTCTGGAAGGAAAAGCGGGGTCTACCCACGTGTGGAC-GTGTGCGCACCCC-------------------AACTCTCCAG---GGGCAACTTGGGGCTGGCAGCAGTGAAGTCTGTAGAGACATTTCCCATTATATATATTTTTGAACAGAATTTT----TCTATATGCATATTAGATATATATATGTATATCACTTAATTTCTACTGTGAGAATTTTCATTAATTTGTTCAGCAAAAGCT-TTAAA- s mm5.chr12 4003200 396 - 115071072 TTTCATGATTAGTTACTTGAAGTCA---CTATA----TGGTGAGTTATTTTATTCC------------------TTAGAACATCGTTTCTAATAGGGACGTATTGTCACTCATCTGAAAGTTCA-ATAGCTGAAAGGAACCAAAAGAACGTGCTAG-ATATTACGTAAACTC-AAAGGAGAGTGTAGAGAT-GACACAGTCTAGTCTCCAAACG-------------------AAAGGAGAGAGGGGAGATCAAGACACAGAACAAACACATGGATGGTTTTC----------------------AAGGGCACTGTGCACC-----------------AGCACTGT-------------------CAGCCTCACA---GGGCAA---------GGCAGGAGAGG----CATGGACACACTTCTTACTGCA-GTACTTT---------TTTT----TCTGTGTTCATAGTCACTA-----ATTTCTAACAC-TAATTTTGGATGTAAAAATGTTC----ATTCCTTCTGTAAAAGCCAGTTGA- s rn3.chr6 4282373 403 - 147642806 -TTCTTGATTAGCAACTTGAAATTC---ATCAGGTGCTGGTGGGACATTTTATTCCTAAGAACA----------TTAGGACAGCATTTTTAATAGGAAAATACTGTCACCCATTTGAAAGTTCA-ATAGCTGAAAGGAACCAAAGGAATGTAGTAG-ATGTTACATAAATTT-GAAGGAGCATGTA-GAGCAGACAC-----AGTCTCCAAACT-------------------AAAGGAGGGAAGGGAGATCAAGACCCAGAACAAACACATGGATGGTTTTC----------------------AAGGGCACTGTGCACA-----------------GGCACTGT-------------------CAGCCTCACA---GGGCAA---------GGGGGGAGAGG----CATGGGCATGCTTCTCACTATG-ATAC------------TTTT----TCTGTGTTCATAGTCACGA-----ATCTCTAACAC-TAATTTTCATCACAAAAATGTTCATTAGTTCCTCCAGTAAAAACTAGTTCA- s canFam1.chr16 22826729 494 + 60307850 TTTCATGATCAGTGCCTTGAAGGCCACCCCCAAATGCTGGTGAAATATTTTATTCACATGAACAAATGCAGTCCCTAGAACATGGCTTGTA----------------AGCTACCTGAAAGCTCT-AGAGCCTGGACAGATTAAGGAAATACATAAGACCACTACA-CAGGTC-TTAACAGAATATTCAAGCCAACACAGAATCATCTCCAAATACACTGCTGAAGTGAAAAACAAGAAAGG-AAGACAAAGTATAGACCAGAACATATGGGCCTGGGGTAC-CAAGCTTCCATCCATAGAAAGAGGCATGGAGAGGGGATACAGGTACATACTGTGCATGCATTGTTCGTGGGATTGGTGAGAGGCTGTCTCCAGGGTGGGGAACCAGGG---GTCCGCAGTGG--------GAAATATCTGTCATTAGATACGGTTTTGAAGTTTGTTTTCTCCCCCATGTGCATA-----------------TGTCACTTAATTTTTAATGTGAAAATTTTCATTAATTTGTTTAGCAAAAGCTTATTCAA a score=22840.0 s hg17.chr7_random 3139 308 + 778964 AATATCTCTCTAGATGCTAAGTTCTGTGTGAGACTTGGGAGA--AGCAGCAG-----AAACATGATGCCATCTCCTCT-----GGGCACTGGAGGAGAAGGACCAAGAAATCAC---ACAGTGAGTTATGATCAC-GAAAGTCACAGGATGCTGTGGGACAG-GAAAGGAAGCACATTTCCATCCTACTCAGCAGCCACCAGTCC-----------TTGCTTTAGGAGTTCATTCCCCCAAG-------TATGATAGAGAATATGTTTCTCTGACATAAGTCAT-CCTtctttctgaggatgtttgtatagcaaacaacctaggaga------------------------------gttcgataattaa---gata s panTro1.chr6 161366285 308 + 161576975 AATATCTCTCTAGATGCTAAGTTCTGTGTGAGACTTGGGAGA--AGCAGCAG-----AAACATGATGCCATCTCCTCT-----GGGCACTGGAGGAGAAGGACCAAGAAATCAC---ACAGTGAGTTATGATCAC-GAAAGTCACAGGATGCTGTGGGACCG-GAAAGGAAGCACATTTCCATCCTACTCAGCAGCCACCAGTCC-----------TTGCTTTAGGAGTTCATTCCCCCAAG-------TATGATAGAGAATATGTTTCTCTGACATAAGTCAT-CCTtctttctgagaatgtttgtatagcaaacaacctaggaga------------------------------gttcgataattaa---gata s mm5.chr12 4003596 319 - 115071072 AATATTTTTAAAG-------GCATGGTGTAAGATTTGTGAGA--TGTAACAGGAACCAAACATGTTCTCTTTGTCTCTCTCAAGAACAACAGGGTAGAAGGATTAGTG---------GCCATGTGCTGTGGTCACTGGTGACCACACACCATTCCTGGATAATAAAAAGAAG--CTGTTTCAGTCTGCTAAATGCTCTCCAGTGT-----------GGGCTTC-GGAGCCC-CTCTTCTAAG--------------AAGACTCTAACTGTTCG-----CATCTG-CTTCTCTTCTGAGGATG-TCACAT-GCAAACAGCCTTGGGCAACAGAGGCCGTGTTTGTGTTCCTCTGGGCGGTCTGGCAACTAA---GGCA s rn3.chr6 4282776 316 - 147642806 AATATTTTTAAAG--GCACAGCAT-----AAGATCTGTGAGATCTGTAATGGGAACCAAACATGTTCTTTCTGTCTCTCCCAAGAACAACAGGGTAGAAGGACTAGTGG--------CCAGTGTG-TGTGGTCACTGGTGACCACACGCCATTCCTGGATAATAGTAAGAAG--CTGTCTCAGTCTGTTAAATGCTCTCCAGTGTGGACTCCCAAGTCCCTCCATGGGC---CGCTTCTAAG--------------AAGACTCTAACCGTCTA-----CATCTG-CTTCTCTTCTGAGGATG-TCACAT-GCCAGCAGCCTTGGGCAACAGAGACTGTG------------------TTCCTGTAGGCAGTCTGGCA s canFam1.chr16 22827414 296 + 60307850 AATATGTTTTTAAATGCCAAGTAC--TGTAGGACTTGGG-GC--TGTGGTGG-----GAACAAATTCCATCTCCCCCT--TGAAGACAGTGTGGCAGGATGACCACCACCACACAGGACAGTGAGCCACGGTGGT-AACAGTCA-----TGCTGTTGCGTATCCACAGGAA------TCCAACCCTCCGGAGAAGCCACTCTCCT-----------GTGCT---GGAGACGATGCTTTCTGGCCATGTCTCGGAAAGAGGCCGTGACAGCTTT-----CTCCAGACTGTCTTTTCAAAGACGTCCGTGAGAGAGGCTTCCCGCTGGA--------------------------------CTGACCACAAG---A--- a score=3627.0 s hg17.chr7_random 3447 40 + 778964 attacaataccatctctctctgtaacaaa--ggctg---gggatt s panTro1.chr6 161366593 40 + 161576975 attacaataccatctctctctgtaacaaa--ggctg---gggatt s rn3.chr6 4283092 44 - 147642806 ATTAAAGCACCCCTCCTTTGGATCCTCAATTTGCTG-TCAGGATT s canFam1.chr16 22827710 42 + 60307850 AATGACACAGCATCCTTCTCTGGAGCCAA--GGCCGGGCAGGAG- a score=573.0 s hg17.chr7_random 3487 2 + 778964 tg s panTro1.chr6 161366633 2 + 161576975 tg s canFam1.chr16 22827752 2 + 60307850 TG a score=191.0 s hg17.chr7_random 3487 2 + 778964 tg s canFam1.chr16 22827752 2 + 60307850 TG a score=271238.0 s hg17.chr7_random 3489 1392 + 778964 ccagcagcctccttttgacactgggggtttcctaagccagttctcctcagctacaacacaaatgcactgcatcggagggggccgctcc-cactgctcctggggggcttgagaagcagagggaacccgt-gcgcacacgcagctcatgatgcctgctgtgctgtgaaca-gcaagtctct-tgtctctggcccagcatctca-cgtcttctgca-gcatctgcaaaactgtggcaggcgacgtt---gttagcctgcaag--tggggaatgacctcaaaccctccatagttcctgacaTGTAGATCGAAATTAGTTCAGC---------------------------ATCCATTGTTTTAAAAAAAATCAAAGAAAAGTTAGTTTTTAAGCCTAGCACTTTCCATGGCCTGG--TCTAAGCTGACATTCACAGTCAGATCCAT-TTCAGCCATGCGCCTCTGAAGGATGTCTCAGAACAGTGAGCTCCC-AGAACACATAGAGACCACCT------CTGCTTCTCCCCAGAGGAGGTCACA-CCCCTCCAGACGCGGGTGTAAGAATGATATAAAGTCACACGAAAGTTCCTATCCAGCCTGTGCCTAGGCAGGAAGCCTGGACAAAGCCCCCTCAG-GGACCTGTGCCTTCCACCT--GCGAGTTGGCATGGGCCAT-----GGAAACAGGGCTGGATCTCGGCTCT--------------GAGGCCG-GGAGTGCCTCATACACATATCGGCAAGAGAAAGCTTGTCTTAGTGATGCATCGATGTTAAGTCATACAGCTCCAAATAACTCCTAAGCTTAC---------AAAGAGAATCCCGTAAGAGAGCTTAGAATTGAAATTGGTTTCTGTCTGGATTTAC----------------GTGTTTTTTTGTTTTTGTTTTT-TTTTTAGATTCAACATGTAATAAAGAGAAACATTTCCAAATCAGACTTACACAAATTACCTCATTGGAATTG-----------------------------GAAGCTAGATTTTTTTCA--------------------------CCTCATTTCTGGCACTCTTTCACACAAATTTCTTAATCGTATGGATT-TAAAAGTGGCTGTAACAGACCCTCAGTATCTCATC----------TCACC--TGGCGTCAGG-TGCAAATGCACACTGTTGTCTCGTGGAGTCACTCAGCCCATCTAATCAGACGC-CTGCCTCAGCCTCAGCC---TGTAGATTCCGGTTCACATCGCTGATAGCATCTTTATTCTGGTAACTTACTTCTATTTACATCCCTGGCATTTGAGCCACGC--ATATTTCAAAGAGTACA-----------------------------------------------GAAAAACAAAAGAGTGGCCAGG-CTGAGGCCC------CGGCA-----TGCTGCTG-------CTTCTCTCCTGAAGGGCAGTGTCTTGTTACCAAGTACTTCGTGCAAGTCAAAAAGGTAAAACAGATCAGAT--ACAGATATTTT-TCCTACAGAGCTGACACTGGAAATAAGAGCCTTCAATATGAG---ATGTCCAGGTA-GACACCTTGTCGCTGCAAGAAAGCCGAGTGA s panTro1.chr6 161366635 1388 + 161576975 ccagcagcctccttttgacactgggggtttcctaagccagttctcctcagctacaacacaaatgcactgcatcggagggggccgctcc-cactgctcctggggggcttgagaagcagagggaacccgt-gcgcacacgcagctcatgatgcctgctgtgctgtgaaca-gcaagtctct-tgtctctggcccagcatctca-cgtcttctgca-gcatctgcaaaactgtggcaggcgacgtt---gttagcctgcaag--tggggaatgacctcaaaccctccatagttcctgacaTGTAGATCGAAATTAGTTCAGC---------------------------ATCCATTGTTTTAAAAAAAATCAAAGAAAAGTTAGTTTTTAAGCCTGGCACTTTCCATGGCCTGG--TCTAAGCTGACATTCACAGTCAGATCCAT-TTCAGCCATGCGCCTCTGAAGGATGTCTCAGAACAGTGAGCTCCC-AGAACACATAGAGACCACCT------CTGCTTCTCCCCAGAGGAGGTCACA-CCCCTCCAGACGCGGGTGTAAGAATGATATAAAGTCACACAAAAGTTCCTATCCAGCCTGTGCCTAGGCAGGAAGCCTGGACAAAGCCCCCTCAG-GGACCTGTGCCTTCCACCT--GCGAGTTGGCATGGGCCAT-----GGAAACAGGGCTGGATCTCGGCTCT--------------GAGGCCG-GGAGTGCCTCATACACATATCGGCAAGAGAAAGCTTGTCTTAGTGATGCATCGATGTTAAGTCATACAGCTCCAAATAACTCCTAAGCTTAC---------AAAGAGAATCCCGTAAGAGAGCTTAGAATTGAAATTGGTTTCTGTCTGGACTTAC----------------GTGTTtttttgtttttgtttttgtttttAGATTCAACATGTCATAAAGAGAAACATTTCCAAATCAGACTTACACAAATTACCTCACTGGAATTG-----------------------------GAAGCTAGATTTTTTTCA--------------------------CCTCATTTCTGGCACTCTTTCACACAAATTTCTTAATCGTATGGATT-TAAAAGTGGCTGTAACAGACTCTCAGAATCTCATC----------TCACC--TGGCGTCAGG-TGCAAATG--CACTGTTGTCTCGTGGAGTCACTCAGCCCATCTAATCAGACGC-CTGCCTCAGCCTCAGCC---TGTAGATTCCGGTTCACATCGCTGATAGCATCTTTATTCTGGTAACTTACTTCTATTTACATCCCTGGCATTTGAGTCACGC--ATATTTCAAAGAGTACA-----------------------------------------------GAAAAACAAAAGAGTGGCCAGG-CTGAGGCCC------CGGCA-----TGCTGCTG-------CTTCTCTCCTGAAGGGCAATGTCTTGTTACCAAGTACTTTGTGCGAGTCAAAAAGGTAAAACGGATCAGAT----AGATATTTT-TCCTACAGAGCTGACACTGGAAATAAGAGCCTTCAATACGAG---ATGTCCAGGTA-GACACC-TGTCGCTGCAAGAAAGCCGAGTGA s mm5.chr12 4003954 1247 - 115071072 CTAACAAGCTGCTGTGGATGCTGTGGATTTACTAGGGTGG--------GGCTGTGACCCAGATACAT-----------GGGCC--------TTGGATCTGAGAGTCTTCAAA---GTAGTAAACCATG-GTGAGTGCGAAGCTCCTGCTCTACGCCGTGTGAGAAGCAGGGAAGTCTGTCTGTCTCTGGCCCAACATTTCC-CATCTTCTGCT-GTTACCACGAACCTGTGGCTGGCTACTCTCAGTCCAGCTCGTCAG--CAGGGAATAA---CAAGGCCCTCACAGTCCCTCCAAGG------------AGTCCA-----------------------------ATGCTCTG-TTTAAAACAAACCAACGGCCACT----------GCTCAGCACCTTTTTTTACCTGG-TTCTAAGTAGA---TTGTAGTAAAACACATCCTTTGGCAAACACCACCTA---CTTTTTCAGGG-AGGGGGTCATC-AAAGCACACC-AGTCTAACTTTTGTGCTGCCAATTCCTGGAGTAG----------CCATAGATGC---CATAAG--------AAAGCCACAGGAAAGTTCCTATACTGACT---------------TCCCTGAGAATATTCCTCCA-----------CCCTCAACC-----------------------------------------ATCTGTGACGT--------------TAGGCT--------CCTCATCCTCATATTGTCAAGATTAAGTTTGTCTTAGCAGTGAATCAAAATTCAACTACAGGACTCCAAATACCTCCACAGCTTTC-------------TGAGTCCTTT--------TTAGAACTGG-------TTTTGTATGGATTTACTACATCTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGT-TTTCTTGATACATCATAAAACAAAGTGGAAGAGTTCCATATTAGGATTGTGGAAGTTATTTTGTCAACATC------------------------------AAAGCTACTTTATTT------------------------------CTAATTTCTGAGGTTCTTCTAGACCAATTACACACTGCCACCGATTATGAAAGTAGCGCTCACAGA-TGTTAGGAGCTCAGCAA------TGTCACTTGTGACTTCATG-AGGATATG--TCCTGTGGCCTTG-----------------TCCTACCAGAAGTGCTCTCTCAGCTCTGGCTCTGCACAGCCTCTGGCTCTCAATGCCTGCAGCATCTTCATCCTGGTAACCTACTGCTATTTATACTCTTGGCATTGGAACTCTGC--ATATTTCAGAGAGGAC-------------------------------------------------TAGGGTCACAGGCTATCTCTT-CTGAGAGCTGCACAGTGGCT-----GGCTGATGGTCAGCTCTGCTCTCCTGAGGGTGGCTAGCTAATGACCAAGAAGTTCTTGCAAAACAGAAAGGT-GGATGAATCAGATATACATATACTTT-TCTCGTA-AGCTAACACTGAAAATAAGAGCCCACAACATGAA---ACGTCCAAGTA-GGCATC-CGTTCTTGCAAGAAAAAGCAATGA s rn3.chr6 4283136 1308 - 147642806 CTAACAACGTGCTTCGGATGCTGAGGGTTTCCTAGGGTGG--------AACTATGACCCAGATGCGT-----------GGGCC--------TTGGACCTGAGAACCTTCAAA---GATGTATCCCTTG-GTGCATGTGAAGCTCACGCTATGCACTG---------CA---GGGTC----TGTCTCTGGTCTGGCATTTCC-CATCTTCTGCT-ATTATCACGAACCTGTGGCTGGCTACTGTCAGTCCAGTTTGCCAG--CAGGGAATAA---CAAGGCCCTCACAGTTCCTCCAAGG------------AATCCAACCTTCTGTGTTTTTGTTTTTGTTTTTTTGTTTTTTGTTTTTTAAAG----AAAGGCCACC----------GTTTAGCATCTTCCTCTACCTGG-TTCTAAGCTGA---CTGTAGCGAAATACTTCCTTTGGCAAACACCACCTA---GTTTTTCAGGG-AGGG-----------GTACACA-AGTCTAACTTTTGTTCTGCCAAGCTCTGGAGTG-------------------GCAGGCATGAG-GTGATAGGAAGCCACAGGAAAGTTCCTATACTGACTTCCCAGAG---------------AATATTCCTCCA-----------CCCTCAACC------ATCTG-----------------------------------TGATGT--------------TAGGTT--------CCTCATCCACACACTGTCAAGATTAAATTTGTCTTAGCAATGAATCAAAATTAAGCTACAGGACTCCAAATACCTCCACAGCTTTC-------------TGAGTCCGTT--------TTAGAATTGAAGTTGGTTTCT-TATGAATTTAC----------------TACATCTTTTGGTTTTGT-----TTTCTTGATTCATCATAAAGCAAAGCAGAAGAAGTCCTTATTAGGGCTGTGGAAGTTACTTTGCCAACATCGAAGATACTTTGTTTCCAATTTCCACCATCGAAGATACTTTGTTTCCAATTTCTGCCATCGAAGATACTTTGTTTCCAATTTCCGAAGTCCTTCTAGACCAATCACACACTGCCACAGACTATGAAAGCAGCTCTCACAGA-TGTTAAGAACTCCGCGACAGTATTGTCGCT--TGTGACTGCA-TGAGGATATGTCCTGTGCCCTTG-----------------TGCGGCCGGAAGTGCTCCCTTAGCTCTGACTCTGCACAGCCCCTGGCTC-CATCGCCTGCAGCATCTTCATCCTGGTAACCTATTGCTATTTATATTCTTGGCATTGGAACTCTGC--ATATTTCAGAGAGCAGACGAGAAC---------------------------------------TGGGGGGTCACAGGCTGTCTCTT-CTGGGAGCT------GCACAGTGGCTGCCGATGGTCAGTTCTGCTCTCCTGAGGGTGGCTGGCTAATCACCAAGAAGTTCTTGCAAAATAGAAAGGT-GGATGAATCAGATATACACATATTTTCTTCTGTA-CACTAACACTGAAAATAGGAGCCCGCCACACAAA---ATGTCCAAGTA-GGCAGC-CATC-TTGCAAGAAAAAACAGTGA s canFam1.chr16 22827754 1309 + 60307850 CCAGCAGCATTCTtgtgacacaaggtgcct------gtgg--------gcct----------tgccc-------catgtggccgttctgcatcgctcctgtgtgacttggga---aaagggaactaggagagagcatgacacccaagcggccta-tgtgccaagagcattcaagtc----tgtctctgacccagggcccccaagtcctttgcaggcatctctgagactgtggccagctcactc---gtcagcctgcaaggatgggaaatc----caaacccttcacag--cttgacaAGTGG--------------------------------------------ATC-------------AAAGTCAAAGAATAGAATGTTTTCTAGTTTGGCACTGCCCAGGGCCCGGGTTTTAAGCTAACATCCACCACCATACCCCC-TTCCGA------------AGGGATAGCTGAGTG--GGGAGCTCTCAAGAAAACACAGAAGCCACTT------CTGCTCTGCCAAGGCACAGGCCACGTCCCCTCCAGATCTCAGCGTAAA--TAATGCAAAGTCATGTAAAAGTTCCTCTCC--ACTCTGCACAGGCAGGAAAACTGGGCAAAGCCTGTGTGGCTGACTCATTCCCCCCCCCGCAGCAGGTCGGCACAGGCCACCACTAGGGAACAGTGCCGGATTTTAGCTATATTTTTAGGCATCGGAGGCCTCGGAGTGCCTCATACATCTATTAGTAGGATTAAGTTAGTC-TACTGATGAATCAATATTAAATGACAAAGTTCTAAATACCTCCTAAGCTTTTCTTTCTTATATAGTGAATTCTTTAAAAGGATTTAGAATTGAAATTGTCTTTCATCTGGATTTAC--------------------------ATGTTTGCATTT-GTTTTAGATTCAGCACATAATAAA----AAGAACTCCTTGTCAGGTTTATATGAATTATCTCGCTATAATTA-----------------------------AAAGCCAATTTTT-------------------------------CCTTGTTTCTG--------TTTCACCAACTTCTTAATCCTACAGAATTTAAAAGTAGACACTACAGACCGTC---------TC----------TCTTT--TAATTTCATGAAGCAAATGTACACTCTCATCTTG----------------------TCAGA----ATGCCTTCACT---------TGCTGCTTCTGGTTTACCTCCTCTACAAAATCTTTATTCTGGTAACTTACTACTATTTATATCTCTGGCATTTGAGCCATGCATATATTTCAAAGAGTAAAAAGAAAAAAAAAAAAAAGAATTTAGAACACAAGTTGTGCCTCTTTACAAAAAGCTGAAGGGTGGCCAGACCTGAGCAAC------AGTCA-----CATTACCG-------CTTTTCTCCCGAAGG----------GTAGCTGGGCTCTTTCTGCCTG--AAACAAGT-----------GATACTCAGATATCTT-TGCTGTAGAACTAATATTCATAATAAGAGCCTTCAATATAAGACAATGTCCAGGTCTGAGACT-CGTCTTTGCAAGAAACTTGAGTGA a score=499.0 s hg17.chr7_random 4881 21 + 778964 CAAGTTTCC------CAACCAACGCTG s panTro1.chr6 161368023 21 + 161576975 CAAGTTTCC------CAACCAACGCTG s mm5.chr12 4005201 27 - 115071072 GGTTTGTCTGTATGACAAACAAGGGTG s canFam1.chr16 22829063 17 + 60307850 CATCTTTCT----------CCACACTC a score=43803.0 s hg17.chr7_random 4902 363 + 778964 ---CCTGCGAGGGGCTCTCG-GGCCTGCATATGAA--------------CCCGCTCAAGCTGGCGTGGGGCTGAG----------TGACTGCCTGGGACCTGCGGC-------CCCTAGCGCCCGATATGACTCACACACGGACTGCCC--------------ACTGAGG-----------------GGGAGCCCCTGTGAATAGTGTAAATGTGCTGACCTGCCTTTGGGTGAGGGTGTTCCAGGAGGCGTCGCCAATCTCAGGTTAAGCTAG----GGTCCAGCTACCGTGCAGAGAGCCATCAGATGGCTCCAGGCTCCCTCAAA------ATCTTTTT---------TTTTT-AATGTATTGTTTGCAAACTTTTAAGAAAGTGGAATATTTTATATAAA-TCTGCATTTCTAATATCCCATGAAAACAGGAAGCTGGACAATTTG s panTro1.chr6 161368044 364 + 161576975 ---CCTGCGAGGGGCTCTCG-GGCCTGCATATGAA--------------CCCGCTCAAGCTGGTGTGGGGCTGAG----------TGACTGCCTGGGACCTGTGGC-------CCCTAGCGCCCGATAGGACTCACACACAGACTGCCC--------------ACTGAGG-----------------GGGAGCCCCTGTGAATAGTGTAAATGTGCTGACCTGCCTTTGGGTGAGGGTGTTCCAGGAGGCGTCGCCAATCTCAGGTTAAGCTAG----GGTCCAGCTACCGTGCAGAGAGCCATCAGATGGCTCCAGGCTCCCTCAAA------ATCTTTTT---------TTTTTAAATGTATTGTTTGCAAACTTTTAAGAAAGTGGAATATTTTATATAAA-TCTGCATTTCTAATATCCCATGAAAACAGGAAGCTGGACAATTTG s canFam1.chr16 22829080 435 + 60307850 TCAACAAGGAGGATCTTTCACAGCCTTCATCTAAAACTACCACGTTCTTTCTGCTCAAGCTGATGTCAAGGTGAACTAGGGATTTTCAATGACTCTGTCCTTAGGTATTGCCATCCTGGGGTCT-ATACGGGTCACAAACCGATCACCTCTGAGAATCTCTGAACTGAGGCAGGAGGAATCTGTAAAGGGGACTGTCCTGAAGATTTCAAATGTCCTGGCCCATCTC----------TGCACCACGAGGAGCTGTGTGACAGTGGGGCAGCCGGGAGTGGTGCAGCCATCACATGGAGAGCCATTTGGCAGCTCTCGGGCCCTACAAGAGGCTTATCTCTCTCCTGCAAAACTTTT-AAGAGATAG-TTGTAAACTTTTAAGAAATTGGAATATTTGATGTAAAGTTTGTATTTCTGATATTC--TGGAAATAGGAAGCTGGGCATTTTG a score=2692.0 s hg17.chr7_random 5265 28 + 778964 GAACTTGGAGGTGAGGAGGGCAACCCTA s panTro1.chr6 161368408 28 + 161576975 GAACTTGGAGGTGAGGAGGGCAACCCTA a score=2681.0 s hg17.chr7_random 5293 13 + 778964 AAAGCCTGTCTCT s panTro1.chr6 161368436 13 + 161576975 AAAGCCTGTCTCT s canFam1.chr16 22830700 13 + 60307850 AAAGTCTATTTCC a score=152942.0 s hg17.chr7_random 5306 770 + 778964 CCTCAGGA-CTACCTTTCCT-AA--CTCAGA-ACTTTCACT-GGAAGAAGGACCTCCCATGGCCACGCTGCTGCTTCTGCCGTGG--CAGACTGGC--------TGCCTCCTCCATC--CACATCT---------CCTGGGCCGCATCAGCATTTCCCAGGACAGACTCTCAGCATGGCTTC-------AGCCAAGTTACTTTATTTGC--CTTTCTCTGGACA------GAGTTCAACCAGACAATCTGGAAGATGGG----CCAGAACCATGCGTGCACCGC-GGAATCGCAGATCTTTACAGCCGGAAGAAGCCTCGGAGGCAGAGCCTGCACGTTTCAGACCAAGAAACGGTGG-CTCAGAGGGGGATGGGAACGGGCAGGGACACCTGTTTTAGTGACAATCTACAGCCcatt-gtccagcgtggagaccgctggcc-gcctgtggctactggac---cttgaaatgg----ggcccaaactgtgtcgtgctgtaagca----caaaaaacacactggacttctacaacttagcatcaaataagaatgcaaaattaat------aacttcaggttgattatacgttgaaatgtt---------aacgattcagatttattcaggtaaataaaggatactattaaaattaatctctcatgcttcttttt------actcattgtaatgtggc------------------------------tTGCATT----------CTGTTGCTGCTGGGCAGGGCTAT---TCTTGAATAAAGCCCACCATC--------------TGAGGCCCTCTACAGGACAACAGACTGTTTTAACAC-----------AGATTTAATTTCTTTCTTGAAGAGG--AGAAAAT-CATGAC-AAAGAGCAGAGAAAGCTGAGGGAC-AAAGGCC- s panTro1.chr6 161368449 772 + 161576975 CCTCAGGA-CTACCTTTCCT-AA--CTCAGA-ACTTTCACTGGGAAGAAGGACCTCCCATGGCCACGCTGCTGCTTCTGCCGTGG--CAGACTGGC--------TGCCTCCTCCATC--CACATCT---------CCTGGGCCGCATCAGCATTTCCCAGGACAGACTCTCAGCATGGCTTC-------AGCCAAGTTACTTTATTTGC--CTTTCTCTGGACA------GAGTTCAACCAGACAATCTGGAAGATGGG----CCAGAACCATGCGTGCACCGC-GGAATCGCAGATCTTTACAGCCGGAAGAAGCCTCGGAGGCAGAGCCTGCACGTTTCAGACCAAGAAACGGTGG-CTCAGAGGGGGATGGGAACGGGCAGGGACACCTGTTTTAGTGACAATCTACAGCCcatt-gtccagcgtggagaccgctggcc-gcctgtggctactggac---cttgaaatgg----ggcccaaactgtgtcgtgctgtaagca----caaaaaacacactggacttctacaacttagcatcaaataagaatgcaaaattaat------aattttaggttgattatacgttgaaatgtt---------aacgattcagatttattcaggtaaataaaggatactattaaaattaatctctcatgcttcttttt------actcattgtaatgtggc------------------------------tTGCATT----------CTGTTGCTGCTGGGCAGGGCTAT---TCTTGAATAAAGCCCACCATC--------------TGAGGCCCTCTACAGGACAACAGACTGTTTTAACAC-----------AGATTTAATTTCTTTCTTGGAGAGG--AGAAAATGGATGAA-AAAGAGCAGAGAAAGCTGAGGGAC-AAAGGCC- s mm5.chr12 4005754 748 - 115071072 CCACAGGA-ATGCTTTTCTG-AA--CTCTGAGGTTTTTACTGAACAGAGCCAGCCTCGGTGACCACAGTGCTGAC----CCATAGCTCTCATTTGT--------TGCCAACTGAAGT--CAGTTTT---------TTAGTGC-----TAGCCCTTCATTGGA-------GCAGTGAGACT-------------GACTGATTATATTTG--------TGTCGACAGACTGTGAGGTCAACTAGACAATTTAGGGAATGTAG-CTCCAGAACCACATGTGTGCTGT-AAAATCACAGGTCATTA-------AAGGAAGCTTTGAGCTGAAGCCTTCAT-TTTCAGAGGAGGAAACAGGGGTCTTAGACAGGTAGAAAAAAAG------------------GTGCCTATTTAGAGCCCTTTCGCCTAGTGTGGGAGCCACTGACTAATCTGTGG-TACTGGAAG--CTTGAAAAGT----ATCGCAAAAGGTGAGGTGCTAATAACATTCTTTAAAAATGTACTATG-TTATAAGACTTAACAGAAAGAAAGAACATAGAAACAAT------GATTTCTTGTTGTTTATAAGTCAAAATGAT---TAGGCCAATAATTTAAGTTAAT--------ATAAAATACATTATTAAGACTAATCTCAC--------TTTTAAAAAAAATTGTTTTAATGTGGC--------TCCTAGAAAT-----------TTCGCATTAGTGATGTAGCTGTAACTCTTTTGTTAGGTAATAGGTTCAGAGTGGAGTGTTGGACT--------------TGAGTCTTGCTAACAAACACCAGACTATG------------------GACTTTAATTTCTTTCTTGAAAAAG--GTGTACA-CATGACTGTTGAGCAGAAAGATCCCAGACA--AAAGGTT- s rn3.chr6 4285263 739 - 147642806 CCACAGGA-CTGATTTTCCTGAA--CTCTGA-ATTTTTACTGAACAGCGACAGCGTTGGTGACCACAGTACTGAC----CCACATCTCTCACTTGT--------TGC------------CAGGTCT---------TCAGTGC-----TAGCCCTTCGTGGGG-------GCAGTGGGACT-------------GACTAACTGTATTTG--------TGTCGATAGATG--GAAGTCAACCATTCCATTTGGGCATTGTAGCCTTCAGAACCACGTGCGTGCTGT-AAAACCGCAGGTCATTA-------AAGAAAGCTTTGAGCTGGAACCTTCAC-TTTCAGCTGAGGAAGCAGGGCTCTAACACAGGTAGGAAAAAGGGCA------------------CCTATTTCAAGCCTTTTTGCCTAGTGTGGGAGTCACTGGCCGATCTGTGA-TACTGGAAG--CTTTAAAAGT----GTCCCAAAAGGTGAGGCCCTAATAACATTCTTTAAAAGTGTACTACG-TTATAAGACTTGACACAAAGGAAGAGTGTAGAAACAAT------AATTTCTTGTTGTTTATAAGCCAAAACGATAATTAGGCCAATAATCTGGGTTAAT--------ATAAAATACATTATTGAG-CTAATCTCACACA-----TTTT----AAACTTGTTTTAATGTGGC--------TCCTAGAAAT-----------TTCACATTAGTGATGTAGCTTTAACTCTTTTGGGAGGCAAGAGATTCAGAGAGGAGTGCCGGACC--------------TGAGTCTTGCTAACGAACA-CAGGCTATT------------------GACTTTAATTTCCTTCTTGAAAAGGTTGTGTGCA-CACGACGATTGAGCAGACAGATCCTAGACA--GAAGGTC- s canFam1.chr16 22830713 833 + 60307850 TCTCAGCATCTATTTTTCCT-AAATCTCTTA-ATTTTAACTGAAGGGAACAGACC----TGACAGTTGTTTTGTC----TTGAGGGCCTGGCTAGCAGGGCCTGTGTCTCATCTATCCTCATAGCTGGCTAATGGCCAGTGCA----TGGCTTTGCACAGGACAGACGCACAGCCCACCTTTGCTGTGGAGCTGAGCTTTTTCACTTGCCTCTCTCTCTGGTCA------GAACTCCACCAGACCATTTGTAAGATGTGGCC-TCAGGACCATGTATGCATTACAAAAATCACAGATATTTA-AGACTGGAGGAATCCTGGGGTCAGAGACCTCATTTTTCAGCTGAGGAAATACAGGCTCCAGAGGGGACCAGAGAGGGCCCACGATGCCTGTGCTAGCAATGGTCTGAAGCCGAgctgtccagcatgggagccactggc-----------tgctgggagcacctgagatgtggtaggtccaaactgtttcgtgttatgagtg----taaatcaaatgctggg-ttctaggatttagtgtgcaa-aaaaatgcaaaacttctcagcgacattttatattgattacaaattgaaatgat---------aatgatttggatatatttgg----ataaagtac---attaaaattaatctcac----tttttttt------cccttttttaatgtggcaacaagaatattaaaaattatctatgtggtccacata----------ccatttcttctgggcagcgctgG---TCTAGAACTAAACCCACATCCATAACTTCTGGTTTCAAGTCCCTCTGTAGGACACTAAACTTACTTAACACAGGCTTACTTTGATTTTAATTTTTGTCTTCAGAATG--AAAAGAG--------AAAAAGCA-----AGCTGAAGGACAAAAGGTTT a score=47755.0 s hg17.chr7_random 6076 228 + 778964 TTGCTACTATTTATAGGCCGGGTGCTATCCCAGGGCA-----GAGTCTATAAACAGGTTGATAGCAGGCCCTGTTGGA--GCATGATGGCCCAGCATGCCTCTG--TCAAACC------------------GGAGAAGGCGATCTGCACGTTCACAGTGTTCACCGCAGGCCCGTCTTCAGCACAACCAAAGTCCCATTTTCCTGTTTGCTTTCTGCCAAGTACCCACCATCCTTAACCAGATCAAAATCATCTG s panTro1.chr6 161369409 228 + 161576975 TTGCTACTATTTATAGGCCGGGTGCTATCCCAGGGCA-----GCCTCTATAAACAGGTTGTTAGCAGGCCCTGTTGGA--GCATGATGGCCCAGCATGCCTCTG--TCAAACC------------------GGAGAAGGCAATCTGCACGTTCACAGTGTTCACCGCAGGCCCGTCTTCAGCACAACCAAAGTCCCATTTTCCTGTTTGCTTTCTGCCAAGTACCCACCATCCTTAACCAGATCAAAATCATCTG s mm5.chr12 4006502 221 - 115071072 ---GTGCTGTTGATACCTAGGCTGATACTCAGGGGCCTT--TGGGTCTGTGACCATGACGG----AGGCACAAATCAAAGGCCTAGTGACTCAGAAAACTTTCAGTTCCACTC------------------AGAAGACAAACTCAACAAACTCACAGTATT-ACAATAATTATGTCTTCAG-AAACCTGAAGTCCCATTTTCCTGTTTGC-TTCTGATAAGTTTCTATTATTCTTAGATGGACCAACTTCA---- s rn3.chr6 4286002 188 - 147642806 ---GTATTGCTGATAGGTCGGCTGGTACCTAGGGGCCTT--TGGGGCTGTGAACATGGAGG----AGGCATAAATCAAGGGCCTGGTGTCTCAGAAAGCTTCCTATTCTACTC------------------GGAGGACAAACT-------------------ATAACAGGTATGTCTTCAG-AAAACTGAAGCCCCATTTCCCTGCTT----------------CTATCATTCTTAGGTGGACCAACGTCA---- s canFam1.chr16 22831546 249 + 60307850 TTGTTACTGTT-ATAATTTGGGTGTTATCACAGAACCTTTCTGAATTAATAGACTTCTGAAT---GTGCATAGCTGGAGTGCAAGTGGTCCCAGCATGTGTGTGtttttttttttttttttttttATGTGGAGAAAATAAAATGAGCAAATTCACTGTATTCACAATAGGTCTGTCTTCAAGAAATCAAAAGTCTAATTTTCCTGTTTGATTTCTG--ATGTTTCCACCATTCTTAACTGGATTAAAATAATCTG a score=285811.0 s hg17.chr7_random 6304 1040 + 778964 TCCTAT--AGCTAAGAATTTAAAATGCAAGAATTCAGATAAATGC-------------------------------------------TTATCCCCTGGAAAACTGAAGCTGCTTTTGCAAAGCATAACAAAGCCCATGAAATTGTTTTAGTAACTGTTGCTATCATCTCAAACCATGGAAACTGTTACTGCTAAGGATTAAGGTTATCTTTTTAAAGGTGTGT------GTGAAGACCCTACCTATCCAACTCTCTCTGAGTTTTACCAGTAGTTCATTAACAAACAATGGGAAGTGGCCTTTCTTTTTCTTTTTTTTTTTTTAAGATGCAGGTGGTGACCCTGA--------------ACCA----------CAGCTGAGTGAGGC-------------------GCATTCCCGGGTGAGAATGTCACGGGAGTTCTTACTCACCAAGCCTCTGCCTTACCTTTGTGTTTTTCTGTTTGAGACCTCAGAAGCTCTGCACATTTTGTTTCTTCCTCCTGTATTTCCAGATGAAATCGGC-ATTCTGGGTGAATGCTGTTCACCTGTTCACGGTTAAAAGAAATATTAATAACTAAAAATTCCACAAGAAGAAGAAAAGCAAGCAAAAATTCTACAAAAACAACCCCA-AACCTCACAGCTTTAAACTGCTTCCAAACCAAAATGCATTTAA-AACCAATCACCTTGATTTTTCTGGCAT-----TTTTT-----------AAAAACTTCACTATTTACTTTGTAAAGGTATTATAAAACAAACACAAAATCTAATAGAATTTTTTTTCTGAGCAGGAAAATGAACTTACTAACAGAATACATCG----------GTACTAATTTGGAGGCAACAGAGCTCTTTACTCCATTCATCTCTCCATACC---CGGCTCCT-------CCGTTTCACACCCTTTGGTTTGGTTTAAGCGGA----------------TGCCTGT-----------------------------GGACTGTGC-------------CGCTTCCT----CCGAGG-ACGGCCTC------CACCCGGGAAAGAGCCGTGATAGAAGGGCTTTATTTTTAAAGGTGTTGGTACATGTTCAAAGCTTAACCCTCTAACTACAGATAAAACTGCAATCGTTTTGACTAGAATTTGGGGTGGAAGAGATATTCAAAGAAATCAGCAAGAT--GAGGAGGGAGGCAGAGGTGGGGGAATCACACC- s panTro1.chr6 161369637 1045 + 161576975 TCCTAT--AGCTAAGAATTTAAAATGCAAGAATTCAGATAAATGC-------------------------------------------TTATCCCCTGGAAAACTGAAGCTGCTTTTGCAAAGCATAACAAAGCCCATGAAATTGTTTTAGTAACTGTTGCTATCATCTCAAACCATGGAAACTGTTACTGCTAAGGATTAAGCTTATCTTTTTAAAGGTGTGT------GTGAAGACCCTACCTATCCAACTCTCTATGAGTTTTACCAGTAGTTCATTAACAAACAATGGGAAGTGGCCTTT----TTCTTTTTTTTTTTTTAAGATGCAGGTGGTGACCCTGA--------------ACCA----------CAGCTGAGTGAGGC-------------------GCATTCCCGGGTGAGAATGTCACGGGAGTTCTTACTCACCAAGCCTCTGCCTTACCTTTGTGTTTTTCTGTTTGAGACCTCAGAAGCTCTGCACATTTTGTTTCTTCCTCCTGTATTTCCAGATGAAATCGGCTATTCTGGGTGAATGCTGTTCACCTGTTCACGGTTAAAAGAAATATTAATAACTAAAAATTCCACAAGAAGAAGAAAAGCAAGCAAAAATTCTACAAAAACAACCCCA-AACCTCACAGCTTTAAACTGCTTCCAAACCAAAATGCATTTAA-AACCAATCACCTTGATTTTTCTGGCAT-----TTTAA-----------AAAAACTTCACTATTTACTTTGTAAAGGTATTATAAAACAAACACAAAATCTAACAGAATTTTTTTTCTGAGCAGGAAAATGAACTTACTAACAGAATACATCG----------GCACTAATTTGCAGGCAACAGAGCTCTTTACTCCATTCATCTCTCCATACC---CGGCTCCTGGCTCCTCCGTTTCACACCCTTTGGTTTGGTTTAAGCGGA----------------TGCCTGT-----------------------------GGACTGTGC-------------CGCTTCCT----CCGAGGGACAGCCTC------CACCCGGGAAAGAGCCGTGATAGAAGGGCTTTATTTTTAAAGGTGTTGGTACATGTTCAAAGCTTAACCCTCTAACTACAGATAAAACTGCAATCGTTTTGACTAGAATTTGGGGTGGAAGAGATATTCAAAGAAATCAGCAAGAT--GAGGAGGGAGGCAGAGGTGGGGGAATCACACC- s mm5.chr12 4006723 1024 - 115071072 -AGGAT--AGCTAATATTTTAGAGC-CAAGAATTCAGACATGTGC-----------------------------------------TATTATTCCCTGG-GAACTAGAGTCACCTTTTCAGAGCATTCCAGAG-CCATAACATTATGTTAGGAACAGTTACC-TCA--GCAAGCCATGGAAACTGTTGGTGTAAAGCATTGAGGTTTTCTTTTAAAAGGTTTGC-------TGAAATCCCCACTGTCACAAGGCTACATTAGTTTTGCTTGTGGCCCACCA--GAACAGTAGCAAGTGGTTCTA-----------ATTTTTTTTAAGGTGTA---GGTGACCTCCA--------------ACCCCT--------CAAGGGGCTGAGAA-------------------GTATAGACAGCT-AGGATCCCACTCCCAGACTTAATCCCCAAACC-------TACCTCTCTGATTCTCCGTTTGGCTGCTTAGCAGCTCTGCACATTTTGTCTCTTCTTCTTGTATTTCTAGATGAAAGCGAC-ATTCTGGATGGATGCTGCTCACCTGTTCAAG--TGAAAGAAATAGAAGTAACTAAAAATGACACAAG----AGAGGGTTAAGCAAAAA-TCTACAGGAA-GATCCAA-CGCTTCACCTTTCTAAATTTCTTTGAAGCTGAAATTCATTTCA-AATCAGCTA-TTTCATTTTCCTGATGTGGTTATTTAAAAAAAAAGAAGAAAAACTTTACTATT---------------TTGTGAAACAAACATAAAATCCAATAGAATACTTTTTCTGAGCAGGAGAGTAA----ACTGACATTGTATGTTG-------TTATTACTAACTTAAGAGCAAT-GGGCTGTTAGAAATGTTCATCTCTCAGAATTGAAGAGCTC---------CCATTTCATAGTCTATGGTTT-GCTTAAGTAAAGCAAGTTAACTCTTAGTGGCTGT-----------------------------GGG-TGTGCACAG--------ACACTCTGTGTACCTGGGG-ATCCTCTCTGTGGTCACCCT----AGAGTCAGAATAGGTTAAGTGAACTTTCATACGCTTCAGGGCACATTCAAAACTTAACCCTACTCGTACTGGTAACATTGTTATCA--TTGAGCAG--CTTGGTGTGAAACACTTTTTTAA--GAATGAGAGGGATTGGATGGAAGAGGCAGCGCTGAGAGAAACAGATC- s rn3.chr6 4286190 1024 - 147642806 -AGGAT--AGCTAGTATTTTAGATCCTATTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTGCTATTATTCCCTGG-GAACCAGAG-TGCCTTTGCAGAGTGTGACAGAG-CCACAACATAACCTTAGGAGCAGGTGCC-TTA--TCAAGCCACAGAGATGGTTGGTGTTAAGGACTGAGGTTTTCTTTTAAACTGTGC---------CGAAATCCCCACTGTCACAAGGCTACATTAGTTTTGT-----GGCCACTG--CCACAGTGGCAAATGGCCCCA--------------TTTTTTAAGGTATA---GGTGACCTCCA--------------ATCCCTCAATCAGAGAAAGGGCTGATGA-------------------GTGTAGGCACCTAGATCCCCCGCCCCAAGACTTGATCCCCAAACC-------CACCTCTGTGATTCTCCATTTGGCTGCTTAGCAGCTCTGCGCATTTTGTCTCCTCTTCCTGTATTTCCAGATGAAACCGGC-ATTCTGGGTGGATGCTGCTCACCTGTTCAAGGTT-AGAGAAATAGAAGTAACTAAAAATTACACAAG-------------------------------------------CTTCACGCTTCTAAGTCTCTTTGAAGCTGAAATTCATTTTG-AAGTCGCTA-TTTCGCTTTCTTCATGT-----GGTTATAAAAAAAGAGAGAAACTTTACTATTTGTT-----------TTGCGAAACAAGCATACAATCCAGTAGAATACTTTTCCAGAACAAGAAAGTAA----ACTGGCATTTTATGTTG-------CTATTACTAACTTAAGAGCAATGGGGCTGTGAGAAATGTGCATCTCTCAGAAGTGAAGAGCTC---------CCACTTCACAGCCTGTGGTCT-GCTTAAGTAAAGCAAATTAACTCTTAGTGGCTGT-----------------------------GGGCTGTGCACAG--------ACACTCTGT--GCCCAAGG-ACCCTCTCTGTGATCACACT----AGAGTCAGAATAGCCTACGTGGACGTTCACAAGTTTCAAGACACATTCAAAATGTGACCCGACCAGTACTGATAATCTTGTCATTGTGTGG-------CTTGGTGTGAAGCACCTTTTAAA---AATGAGAGGGATTAGACGGAAGAGACAGAGCCGAGAGAAACGGATC- s canFam1.chr16 22832015 1062 + 60307850 CCCGACTAAACTAAAATTTTTAAATGCAAGAAACCAGATAAATAC-------------------------------------------CCCTTCCACGG-ATAACAGAGTTGTTTCAGCAACGCATAACAGTGTCCATGAAATTATTTTAGTAACTGTTGCTATTATGTCAAACCATGAATACTGTTACTGTTAAGGA-TGAGCTTCTCTTTTAAAAGGTATATTATGGGAAGGATTCCCTGGACCCCAATATTCATATGAGTTTTACCA---GTTCATTA--AAAAAGTGAAAACAGACTTTT----------------TTTGAAGATGCA---GGTGATTTTTAAAACAATTTTAAACATCAAT--------TTTTAGAGTGAGACATGAGCTATTTGCCTATCAGCTTATCCAGCTGAAACTGTTG----------TACTCACCAAGCCCCTATCTTACCTTTGTATTCTCCTGTTTGAGTCTTTAGAAGCTCTGCACATTTTGTCTCTTCCTCTTGTATTTCCAGATGAAATCGAC-ATTCTGGGTGAACACTATTCACCTGGTCAAGGTTCAAAAAAATGGAAGGAACTAAAAATTCCACCATAAGAGGAAAGTCAAACAGCAATTCTACAAAACCAAACAAAGCACCTCATCATTCTAAACTACTCCCCAAATAACACTCATTAAAGAAGCAATCACCTTCATATTTCTGGCATGGTTATTTAA-----------AAAAAGTTTACTTTGTA--------AGGAATTATAATACAAATATA-AACCTAATAGAAT--TTTTTCTGAGCAGGAAAACAA-CTTACTAACATAATACATTGTATGTTGTTAGTACTAATTTGGCAGCAACAGAGTTTTTTAATCCAATAACTTTTCAGTGTT---TGAGTCCT-------CCGCTTCATAGCCCTTGATTTAATTACAGCACA----------------TACATGTCTACTCATAAGACTCTTCTTAACGACCAGGCACTATCCCCAGACGCCAGCACGCCTCCT----CTCAGC-AGAGCCTC--TGCCCTCACTGAACAGAACTATACTAGGATAACTTTATTTCTGGA-GCTGCAGGTCACATTTCAAACTT--------------------------------------TAGAATTTGGTGCGAAGGAGATTTTCAAAAAGATTAGAGGGGTAAGTAGGAAGATGAAGAGCGAGGAGGATTATCATG a score=1119.0 s hg17.chr7_random 7344 4 + 778964 ATTG s panTro1.chr6 161370682 4 + 161576975 ATTG s canFam1.chr16 22833077 4 + 60307850 ATTG a score=373.0 s hg17.chr7_random 7344 4 + 778964 ATTG s canFam1.chr16 22833077 4 + 60307850 ATTG a score=9610.0 s hg17.chr7_random 7348 96 + 778964 TGGCCCCACAGAGAAGAGGGGGCGATTTCCAGTCAGGATCCATCAGGGGAGCGAAAGGTGCCACAAAGATAGTAATTAACA--GTCTACTAATGTGAG s panTro1.chr6 161370686 96 + 161576975 TGGCCCCACAGAGAAGAGGGGGCGATTTCCAGTCAGGATCCATCAGGGGAGCGAAAGATGCCACAAAGATAGTAATTAACA--GTCTATTAATGTGAG s rn3.chr6 4287214 81 - 147642806 TGATC---CAAAGAGCCATGGGAGGTTTCT-GTAAAGCTTTCACAGGG-----------TCCTTAGACACCGAGGCTGAGA--GCCAGCCAGAGTAAA s canFam1.chr16 22833081 93 + 60307850 CTGCC---TCTAAATAAGGAGGTGATTTCCCATTGTGATTTGTCATAGGAACTAAAGCTGTGGCACAGA--GTGATTAATATTGCCTATTACTGTGTG a score=35480.0 s hg17.chr7_random 7444 282 + 778964 AAGAAGGCAGAACTACACAATGCTTCCTCTCAGAAGGCACCGTTTCT---ACCTTGTTCTTCACGCCCTCCGCGAAGTCAGCACAGG-CCTGCCAAGCGGCCCTT--GGGGGCTTAAGGAGGGCTCCCCC----CACCCATCCTTTTGG--------------------TCTTGATC-TTCCCCCTCCCCCACCACCGACCAAAATTCTACTTGTACTAAAGTAGTAACTAAAGAGAATCATACT--GTTGGGCGTACTATGGCCA--TCTATGTTTAGTTATCTTACTATTGAAAT-GGTCAATGAG-----AGTTCCAACC s panTro1.chr6 161370782 283 + 161576975 AAGAAGGCAGAACTACACAATGCTTCCTCTCAGAAGGCACCGTTTCT---ACCTTGTTCTTCACGCCCTCCGCGAAGTCAGCACAGGGCCTGCCAAGCGGCCCTT--GGGGGCTTAAGGAGGGCTCCCCC----CACCCATCCTTTTGG--------------------TCTTGATC-TTCCCCCTCCCCCACCACCGACCAAAATTCTACTTGTACTAAAGTAGTAACTAAAGAGAATCATACT--GTTGGGCGTACTATGGCCA--TCTATGTTTAGTTATCTTACTATTGAAAT-GGTCAATGAG-----AGTTCCAACC s mm5.chr12 4007853 245 - 115071072 AGGAAGGCAGCATTTTCTGATCGCTGTTCTTATAAAGACCCA-----------GTGTCCTT---------------------------CCTCCCAGGCTGGGCTC-------CTTGTGGAGCACTCACTCTCATTACTTGTCTGTCTGT--------------------CTGTCTGC-TTCAGTTTCTCCCTGTCTTAACAAAAATT-TGCTTTTAC-AAGACAGTAATGCAAAGGAATCCTGCTCAGTTAGG-----TATGGCTATCTCTGTGTTTAGTTATCCTACTGTTGATCTAGGCCAGCTAG-----CATCCCAACG s rn3.chr6 4287295 290 - 147642806 --GAGAGCATCTGAGCTCACTG-----TCCAGGAAGACAGCATTTTCTGATCACTGTTCTT--------ATAAAAACCCAGTCC----CCTCCCAGGCTGGGGATGGGGGGGGTTATGGAACACTTACTCTCATTACTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGCCTGTCTGT-CTCAGTTTCTCCCTGTCTTAACAAAAATT-TGCCTTTAT-AAGACAGTAGTGGAAAGGAATCCTGCTCAGTGAGG-----TATAGCTATAACCGTGTTTAGTTGTTCTACAGTTGATATAGGCCAGCTAA-----CAT-CCAACA s canFam1.chr16 22833174 235 + 60307850 CAAAAGACAACGCTGCACATT---TAGTCTTAGAAGAAAATAGTCCCTGATCTCTGTTCTC---TTTTTTTAT---------------TTCTCCA------------------------------CACCCCCAGTACTCATACTATAGG--------------------CTGGAACTGCACACCCCCTCCTGTGTCTGAACAAAATTTTTCTTTTAT-----------TGTAAGACAGTCATACT---CCAGGTATATTATGGCCA--TCTATATCTAATTATCCTACTATCAAAAT-GGTCAGTTAGGAATAAATTCTAACC a score=72501.0 s hg17.chr7_random 7726 305 + 778964 AGGAACACAATATCCTAACAGAATTAAGGGGAAAA---CAATGCTGGA-ACTTCTGCCACCTTCAGCCCCA---TTTAAAA----------GAGCCCCGAGCTTGCTTCTTGCTCGTGA-CTGAACCAGCACCAGGCACTGACTTTGGGCTCCA---AGTCCTCTGTTTTCATGCAGGA-CAAGTAAGTGGCT--TAAATTTCAGAATTAAGGAAATTATATTGATGTAAAAAGAAAAACTTTGTTAAAGTGTAAAAGACATTAATAATACCTGACGTTCCTGGAATATGCACAGCAATGACTTCTTTTAGGACATTTTAGCAATGAAA s panTro1.chr6 161371065 305 + 161576975 AGGAACACAATATCCTAACAGAATTAAGGGGAAAA---CAATGCTGGA-ACTTCTGCCACCTTTAGCCCCA---TTTAAAA----------GAGCCCCGAGCTTGCTTCTTGCTCGTGA-CTGAACCAGCACCAGGCACTGACTTTGGGCTCCA---AGTCCTCTGTTTTCATGCAGGA-CAAGTAAGTGGCT--TAAATTTCAGAATTAAGGACATTATATTGATGTAAAAAGAAAAACTTTGTTAAAGTGTAAAAGACATTAATAATACCTGACGTTCCTGGAATATGCACAGCAATGACTTCTTTTAGGACATTTTAGCAATGAAA s mm5.chr12 4008098 277 - 115071072 AGGAATACAATTTCCCAATAGAATCAAAGGACAAAACTCAATGTTGAATTTTTCTGCTACATTCA-CTTCA---TTTAAAA-TCACTTGAGGTACCTTGGATTTACCAGCTCATTGCTA-CACAACCACTAAAATGCAGAGATTCGGAG-------------------GTCAAGCAATAGCAACTCACTGATC--TGAATTTCAGAACTGATGAGATGATA---------------------AATTAAGGTGCTAAAAGC-CTGGTATTG-CTGACATTCCTGGAACATGGGGAACGATGAA--ATGTTGGGATGTCTGAAAGGTTAAA s rn3.chr6 4287585 262 - 147642806 AGGAATACAGTCTCCTAATGGAATCAAAGGACAAAACTCTAGGTTGGA-TTTTCTGCCACGTTCA-CTTCA---TTTAAAGACCACCCGAGACGCCTTGGATTTACCA-------GTTA-CACAATCACCAAAATGCAGAGA---------------------------TCAAGCAACAGCAACTCACTGGTC--TAAATTTCAGAACTGATGGGATCATA---------------------ACTTAAGGTGCTAAAGGC-CTGCGATCT-CTGACATTCCTGGAACATGGGGAACAATGAA--ATCTGGGGACATCTGAAAGGTTAAA s canFam1.chr16 22833602 308 + 60307850 AGGAATAAAGTTTCTTAACAGAATTAAAAGAAGTA----AGGGCTGAT-ACTTTTGCCACATTTACTGTCAATTTTTAAAA--GACACAAAGTTCCCTG------CTCCCAGCTCATGAGGACAACCAGCA--ACTAAGAAACTGCTGGTTTCAAACAGATCATACTTTTCATATATGAACAAGTCAATGGTCTTTAAATTTCAGAATTGAGAAAATTATGTTGACTTAAAAAAATGTTTGTCACTAAA-----AAAGACACTATGGCTC-CTGACATTGCTGTAACATGACAAGCAATGACGTACTTTGGGAGATCTTAGAAAACAAA a score=12179.0 s hg17.chr7_random 8031 187 + 778964 GCAGCATTAACCGTGATA-----------------AAACCCG----------------------------------------------------------------------------------------------------TTACTTTCCAAGGACCCGCTCCGCAAAGCGCCCACCCTCGAGGGAGGAAAGCCGAGCTGCGCCTCCGCGCAAGGCCAGGGAGTGTGGCTCGAGC---CCCGCTGCAGACCGGGCGTCGCCGGTTAATCAATGAC--ACTGTCGGGTCAGCAGCGCAGCCTCCCAGCT s panTro1.chr6 161371370 187 + 161576975 GCAGCATTAACCGTGATA-----------------AAACCCG----------------------------------------------------------------------------------------------------TTACTTTCCAAGGACCCGCTCCGCAAAGCGCCCACCCTCGAGGGAGGAAAGCCGAGCTGCGCCTCCGCGCAAGGCCAGGGAGTGTGGCTCGAGC---CCCGCTGCAGACCGGGCGTCGCCGGTTAATCAATGAC--ACTGTCGGGTCAGCAGCGCAGCCTCCCAGCT s canFam1.chr16 22833910 295 + 60307850 GCTGCATTGGCCAGGAAATTCTTGGTACTTCTAACAAACTAGCTTTCAAAGAGGGACAGTTACTAACAAGGGTCttttttttattttattttattttattttattttattttattttatttattttattttattttattttattGTTTTACAAGGGTCTTTTTAAAGCACCATCCCCCCCCACCCCAGGACACCTGG--TGGACCTTCCTACCAGACAAGGGAGCTGGGCAGGTGCTTACCCCCCAAGTAACGGATACCCTCAG-----CAGTGACCAGCTGCCCAG-----AGCTCGG--TCCTTGCT a score=100.0 s hg17.chr7_random 8031 1 + 778964 G s rn3.chr6 4287847 1 - 147642806 G a score=-691.0 s hg17.chr7_random 8218 25 + 778964 GCGG------AGGGG----------CCGCGGATCGATCCAG s canFam1.chr16 22834205 38 + 60307850 ACAGGACCTCAGGGGGCTAGGACGCCAGGGGGCCAAT---G a score=-241.0 s hg17.chr7_random 8243 2 + 778964 AC s rn3.chr6 4288006 2 - 147642806 GG s canFam1.chr16 22834243 2 + 60307850 AT a score=58406.0 s hg17.chr7_random 8245 1152 + 778964 CTGCCTCGGCTG-------CGACGCGCACGAAAACCGCGCGCACCGCAAACCCGCTTCAGTCTCCA------AGAGGAAA--GCAAGAAACAAGGCTCGGGtttttttctttcttttttctttcctttttttttAAGGTTC----ACAGAGGGAATAATTC---AGAACTCCATGTG------CGAAGGCACTTAATCAACAAACTTATGAGCAG--TTAGTTCCTCCAGTGCCCTTGGG--------------------------------------------------------------------A--AAAAGCAACTATTTCCAAAAGGAAACTTTATTTAACCGACGCCACGTCCCC-CCG----ACACTAAAAC-----TAACC----AGTAAGTACAGG-GAGGGACCGAGAGGCATCTG-----CGGCCAACGCCAACCCCGATCTCCCCGTGAAACGCGC-AGCCCGCGCAGGCGCCC---GCAGC------------------------------------TCCCAGCTCCCGGGAC-------GGCCCCGAACGAGCTCATCGTTGACGC----GTCCAGGAAGAA-ACGATCCCGTTTCCAGCAAACCCCGGACGGTGGGGCGCGGGGAAGG-----GCGCAGGCAGCCTCCCAACCCGAGTCCCGCAACCCGGC------------GGGACCGG---AGC-TCAGCGCTTCACGCTCT--CCGGGAGGAAGCTCCGGACCCCG------------------GGCGACCCCGC--------TCCCTCTCCCGG-ACCCCG---CCCGCGCTCCAGCACCCGGGAGGAAG-------------GC--------------------GAAGACCGGCGGGAGGAGC--------------GCTCTTCTCGGAAGGGGAGAACCGGG--TCCGAGGCGCCG--TG------GGGCGGGGGTCGC-GGGCGCACTCACGGGGGCGAGCAGCC------AGCAGGTCAGCAGCGCGGGAGGCAG------CAGCGTCCGCATCCCGAGCTCAGCGTGCCGGGGGCCG----CCCAGCGCCCGCCGC--CTCCGTCCTAGGTCCCCGCGGTTCCGCCGCCTC--CAGCATGGGCCGGGAGCGAGTGCGCGGAGACCTCGGGCCCCGCAGCTGTAGCCGAGCGCCCCGA---GCGCGGGGGCCGCCCCCTCCGTCCCGGCAGCTGGAGCGCGCTCAATGCACGc-ccgtcccccacgc-----gccccgccgctccgccccccg-cccctgtccccgccccgcgctgccccaatcctc--------gtctccctc-----ctc----ccccgagaacccccgctccgcgcccctcctccccgccccccacttcccctt----------ccgctgcgccccgc----gccctctcctcgcccctgggctctctgtccccgccgcg------cgcgctccctctggtctcctcgaccccc s mm5.chr12 4008540 1160 - 115071072 CTCCCTCAGCCGGAGGCCTAGATATGTGTGGAAACCTTAAGCTCCACAGG---GATACAGTTCTCAGAGCAGAGAAGCAAATGCAAGAAATAAGGCTCAAG-----------CCCTTCTTTTTCTTTCTTAAGAAAGGTTTTCAAATAAAGGGTAGAGTTCCGGAGAACTACATAAAAC----CAATGCAACCCATGTAACAAACTTCGGTTCAG---GGGTTCTTTTGGCTCTCTTAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATAA--AAAAGAGAGTATTTCCAAAAGGAAACTTT-CTTAGCCACAGCACTTTCCTT-CTGTCACATACTAAA-------CAAAC----ACTCAGACCAGGAGATGGAAAGAGAAATATTTAACCACAGAGTAACAGCAGTTTCTATC--------GGAAGCAA-AGTCAGAGCAGGTGGCCCGGGCAGCGGCCACTC-TTCTCGCTGGGTGCTAGGGGTG----TTCCCAACTCCAGGAGCACTGCCAGACCAGGACCCAGGTCGTCCCAGGGGCGGGGGTCGAGGAGAACTTCAACCCCACTTCTGGCGAACCCGCAACGGCGGT----------GG-----GAATAGGAAAATTCC---CCTGAGTCCAGCAGCCCA--------------GGGTTTGGTAAGGC-TCAGTAGGAAGCATTCT------------GCTCTGGATT---------------------GTCTCCCCTGG--------CCCCACGCTCCG---CCCG---CTCGTGCT--GGGACTCGGAGGTGAG---------CCCCGC--------------------GGTCCACTGCAGGATGCGC---------------CTCTTC-------------------------------------------GGGAAGTGGGCGC-GGGTTCACTCACCCGCACCAGCAACCAGCAGTAGCAGGTCAGCACCAC---------------CGACGCCCTCATCTTGGGCTCAGCGT-------------------------GCTGC--CTCGGTCCTTGG---------------CGCCTCAGCAGCACGGTC---------------------------CCCTGC-------TCCGGGC-CTCCCA---GCGCGG-----ATTTCCTCAGTCT------------CGCGCCTATCGCCCTCTCCGCCTTCCAGGCTGCAAGTCCCG--GCCCCGCCCCTCG-GCCCAGTCCCCGCCTCGCGCC-CCTTTCTCCTTTTTGCGGAGTCTCTCTCTGGCACTCCGGTCCACCAGATCTCTGTCCAAACGTCCCTCCTTCC--ACCCCTACTTCCCTCTGAAGTGCAAGACCCTGGGCCTCACCCCGACCCCCTCCTGGCCTGGGTACTTCCCTTGTCAGCCCTGCTCTCTCGCGCTCCTTC----CTCCCAGGCTCCC s rn3.chr6 4288008 1096 - 147642806 CTCCCTCAGCCGGAGGCCTAGATGTGTGTGGAGACCTTGAGCTCCACAGG---GATGCAGTTCTCAGAGCAGAGAAGGAAACGTAAGAAGTAAGGCTAAA------------CCCTTCT-TTTCTTTCCTAAAAAAGGTTTTCAAATAAAGAATAGAGCTCCCGAGAACCACATAAAAC----CAGTGCAACCCATGTAGCAAACTTCTGTTCAG---GGGTTCCTTTGGCTTTCTTAGA-----------------------------------------------------------------AGAA--AAAACCGAGTATTTCCAAAAGGAAACTTT-CTTAGTCACAGCATTTTCCCCTCTGTCACATACTAAA-------CAAAC----ACACCGACCGGGAGATGGAAAGAGAAATATTTAACCACAGAGTAACAGCAGTTTCCCTC--------GGAAGCAA-AGCCAGAGCAGGTGGCCCAGACAGCGGCCACTCTTTTTTGCAGGGTTCTAGGGATG----TCCCCAACTCCAGGGACACTGCCAGACCAGGACCCAGGTCGTCCCGGGAGCCGGGGTCGAGGAGAACCTGGACCCCACTTCTGGCGAACCCGGGACGGCGGTG---------AG-----ACTAGGAAAAGTGCC---AGTGAGTCCAGCAGTCCA--------------GGGATCGGTAAGGCTTCAGTAGGACGCA------------TTCTGCTCTGGACT---------------------GTCTCCGCTGG--------CCCCACGCTCTG---CCCG---CTCCTGCT--GGACTCCGGAGGTGAG---------CCCAGC--------------------GGTCCACTGCAG----------------------------------------------------GATGCGCCTCCTC------GGGAAGGGGGCGC-GGGTTCACTCACCCGCACCAGCAACCAGCAGTAGCAGGTCAGCACCAC---------------CGACGCCCTCATCCTGGGCTCAGCGT-------------------------GCCGC--CTCGGTCCTTGGCGCCCTCAGCAGCACCGGCCC--CAGC----------------------------------------------TCGGGGC-CTCCCA---GCGCGG-----ATTTCCTCAGTCT------------CGCGCCTATCGCCCTCTCTGCCTTCCAGTTAGCAAGTCCCG--GCCCCGCCCCTCG-GCCCAGTCCCCGCCTCGCGT--CCCTTCTCCTTTTTGCAGAGCCTCTCCCTGGCACTT-AGTCCACCAGATCTCTGTCCAAGCATCCCTCCCTCC--ACCCCTGCTTCTCCCAGTAGTGCAAGGACCTGGGCCTCACTCCGACCCCCTCCTGGCTTGGGTACTTCCCTTGTCAGCCCTGCTCTCTCGCGCTCCTTC----CTCCCGGGCTCCC s canFam1.chr16 22834245 1156 + 60307850 ---------CTGG------TGCCACACGCAGAAAAC-----------------GACCCA-------------GGAGGAAA--GCAAGAAACTAGCTGACAG----------------------TTTTGTTTTAAAAGGTCTTCAAGGAAAAGGAAGAATCCT--AGAGCAGCAGAGGATCTAGTAGTGCAGTGCTTG-AACAAAC-CCTGCTCGGTCTCATTTGCCCCAGTGCTCTTCAA-------------------------------------------------------CAATGATGAAAGAATCAGAGCAGAATATTTCAGAAAGGAAACTTTCTTTCACCACACCGGCTCCCTC-CCA-AACACACTGAAACACTTACAAACCGGTAACAAGCACAAGGGGTGGAAGGAGAGCTATTCAACCACAAGGGAACTGAAATTTCCCTC--------GGGAACGCGAATCTGCGCAGGTGGCC---GCAAC-------CCTGTCCCCTGTCTCCCCAGCACGACCAGCCTCACGCCCCGGGAAGGAGC--GACCCAGATC-AGCTCCTCCTTGAC-CAGCTTCTCAGGCGGAACCTGATCGAGCTTCTAGCAAATCCAGGGCGGCCGAT---------GGGACCCGCAACGGCATCTTCCCTGCCCGGGTCC--CAGCTCTGACCGGAGAGGGAGGGTCCCGG---AGC-TCCCCAGACGACCCCGTTCCCGAGCTCAGGCCCCGAATCCCGAATcccggacctcggaccctggaccctggacatcggaccccacacctcgcaccccggaccccgcactccggaccccggCGGAGGGGGAGGGTCCCCAGGCCGGCCCCGTGCCCGACTCCCGGTCACCGGAGAGGAGCGCACCAGGCGAACCGCGCCCTCTCCGGGATGGGAGGACAGGGAAGACGAGGCTCGGGGTGCAGGGAGGGCAGGGGGCGCAGGACGCACTCACGGGAGCGAGCAGCCAGCCGCAGCAGGTCAGCAGCGCGGGCGGCAGCAGCGCGGGCGCCCTCATCCCGGCTCCGGCGA--CATGGGCCGAgccccgggcgcgcaccgcggctcgggccccgc-gcccccAGCTCCGCCAGTCC--GAGC-------------------------GCCGCGCACCCCGCAGCTGCCACGGGGC-TGCCGGAGCGCGTGG-----GCCGCCCTGGGTC------------CCCGcc---cgcccgg-ccgcatcccgc-------gccccgcagctccgccccccgcgcccgggccccgccccgcgc--ccc------------------------------ctc------------------------ggccccgcg------gcccccaggcccccct------------gctgctctccgc--------------------ggcgctgccggctcctgtcct-------cgcagcccc------------------- a score=281.0 s hg17.chr7_random 9397 38 + 778964 ccagcctctctctccgttctcctcccctcttccctggc s mm5.chr12 4009700 38 - 115071072 TCTGCTAACCGAGCTGTACTGCCTCCCTCCTCTGCGAC s canFam1.chr16 22835401 28 + 60307850 ----------gcgccccctcctcccgctcgccgccggc a score=3430.0 s hg17.chr7_random 9435 354 + 778964 ccacgcccccctccCGGCCGCGCCTCCCCGATCTGTGGGCGGAGGGGCTGGGAAGCGGGGTGCTCAG-----TGCGCGCCCGGCTCCGAGTAGAGAGAACTGGGGGAGAGCGGCC-GGCGCGGGGCC-----GGGAGAGGAGGACCGGGCCAGGTGTGCGCTCGGAAGGGGCGGATGCCTTTGCGGCCGCCTGTACCTGCCTTTCTAAACAA----CTGCGGAAGCCCAAGAAAGCGGCCAGAGACCCGTCCGGGGTGGGCGCGCCGTCTTTGTAGCCAGTGGGGCTAGGTTGGGGCATCTGAAAATGGAGAAAATCAGAGTGCTTTTTGGTGGGGATCCCCGCAGCCTCAAAGAGGACATCAGGTCGA s canFam1.chr16 22835429 297 + 60307850 -----cccccttccc--ctgcgc---------cTGCGGGAGGAGCGGCTCGGG---GAGGAGCACAGGTGGACGAAGGGCTGGCCCTGGACAG-----GTCAGGGGACAGCCGCTGGGAGTGACACCCCTCGGGGACAGGGAAACGGGGCTCTGGGCGCGACCCGCAGTGG-------CTTTGCGCCCACTTCTGCTCTCCTAGTTAAGTAACGAGCTAGAGACGCCCAAGAAAATATCAGGAAACCCGG-TGTGTGGGGGGTGCTGCCTCCGAAGCCGCTGGGGCCCAGTGGGGG-------------------TTGGGGTGCT-----------GCCTCCGAAGCCGC----------TCGGGTCGA a score=200.0 s hg17.chr7_random 9435 2 + 778964 cc s mm5.chr12 4009738 2 - 115071072 CC a score=4643.0 s hg17.chr7_random 10077 237 + 778964 TGTTGTTTTAATtttttatttggaaataatttcaaacttacacaaaaattagaagaataagaatattacaaataactcctttttatcctttttgtggattcggtcatt-aacatttacctcattgggcttatcatttgctTCTCTCTGATCCCCCACCCCCCGTATTCACAGATATCGATTTTTCTATCATCTGATGTTTAT-CATCCA-CATtatctatcatctacctatccatcatct s canFam1.chr16 22836768 204 + 60307850 TGTGAttttaa--ctttgcgtgaaaataa-tgcaaacttacacaaaagtt---atcataagaagagtacagagaacaccccttccccctttacttaggttcagctattgaagttttaccttattggcctC----TTAGGGTCTGTGCCCTCTCCCACCCCC--------------------------TCACCTGCCCCCCATGCATCCATTAACATCTCTCAGCTGTCTGTCTGTCATCT a score=38312.0 s hg17.chr7_random 10907 569 + 778964 ATCTACCTGCCTGTCATCTATCAATCACCTATCAT-CTGCctatctgtcatctgcctgtcatctatcaatcacctatcatctgcctatctgtcatctgcctgtcatctatcaatctatcatctgcct----------------------------------------atctgtcatctgcctgtcatctatcagtc---tatcatctgcctatctgtcatctgcctgtcatctatcatctgcctatttatcatctatctgtgatctatcatatctgtgatctgcctgtcatctatcagtcatctatcatctgcctatttgtcatctatctgtgatctatcatatctgtgatctgcctgtcatctatcagtcatctatcatctgcct--------------atctgtcatctgcctgtcatc-----------tatcatctgcctatttgtcatctatctgtgatctatcatatctgtgatctgcctgtcatctatcagtcatctatcatctgcctatctgtcatctgcctgtcatctatcatctgcctatttgtcatctatctgtgatctatcatatctgtgatctgcctgtcatccatcatctgcctgtcatctatcgatcatctatcatctgccta s panTro1.chr6 161373946 589 + 161576975 atctacctgcctgtcatctatcaatcac-tatcattctgcctatctgtcatctgcctgtcatctatcaatcacctatcatctgcctatctgtcatctgcctgtcgtctatcaatctatcatctgcctgtcatctgcctatcatctatcatctgcctatttgtcatctatctgtgatctgcctgtcatctatcaatcatctatcatctgcctatctgtcatctgcctgtcatctatcatctgcctatttgtcatctatctGTGATCTATCATATCTGTGATCTGCCTGtcatctatcgatcatctatcatctgcct----gtcatctatcgatcatctatcat---------ctgcctgtcatctatcgatcatctatcatctgcctgtcatccatcgattatctatcatctgcctgtcatccatcgatcatctatcatctgcct----gtcatctatcgatcatctatcat---------ctgcctgtcatctatcgatcatctatcatctgcct----gtcatctgcctgtcatctatcatctgcctatttgtcatctatctgtgatctatcatatctgtgatctgcctgtcatc------------------tatcgatcatctatcatctgccta a score=36997.0 s hg17.chr7_random 11476 312 + 778964 tctgtcatctgcctgtcatctatcctctacctgt-tatctatctGGCTTCATCCATGTGTATCTAGTGGGAGACGAG-GAGAGGGAGACCTGGGCCTTAGGCGGGCTGCTTGGCTTGTGAAGAAAGCTCGTGGCGCTGGGTGCCTTCGACAAACGCATCTTTTTCTCCCGGT--------TCCACCTGGGTGAGCGATGAACTTTGAGCTCTATGCATTTGTAGG-AATGACAG---CACCTGCCCTTCCACCGCAGAGGGGCTCTGTAATAATCAAGGTGATTAATGCACACGTCAATACCTTGTTGAGGGCCTGCATTTTAGAA s panTro1.chr6 161374535 313 + 161576975 tctgtcatctgcctgtcatctatcctctacctgt-tatctatctGGCTTCATCCATGTGTATCTAGTGGGAGACGAAAGAGAGGGAGACCTGGGCCTTAGGCAGGCTGCTTGGCTTGTGAAGAAAGCTCGTGACGCTGGGTGCCTTCGACAAACGCATCTTTTTCTCCCGGT--------TCCACCTGGGCGAGCGATGAACTTTGAGCTCTATGCATTTGTAGG-AATGACAG---CACCTGCCCTTCCACCGCAGAGGGGCTCTGTAATAATCAAGGTAATTAATGCACACGTCAATACCTTGTTGAGGGCCTGCATTTTAGAA s rn3.chr6 4289744 277 - 147642806 TCTGTCTGTTGCCTGTCATCCTTCCATCATCTGTGCATCTGTCTGTGTCTGTCCA-----------TCAGACATTATGGAGGAGAAGGTCTGGGCACTAGGTTTGCAGCTTGG---GGCCAGGAAGCCTG-GGCTCTGG----CTCTGTCCACGACTCCTCTTCCAGCCAGTGAACCCAATCCACCTG-------------------------CACATTTGTAAGTCACGACAGTGACCCCCGCCCTTCCATCCCAGAGGGTTACAATTAGAATTAGGAGAGCTGATACACATG--AATAGCT--GTGAGGG-ATACATTCTAAAA a score=149606.0 s hg17.chr7_random 11788 1679 + 778964 GTGACTGTCCAGGGTGCAGTGAGGGGTTGCATGATGGGTGAGTCTTCCCCTGCAGCAGTGCGTCCCGATGGACGGGGTAGACCAGGAGAAATGGCTGTGGTCGTAGCTAGATGGCACACTTCTCTGAAGGTCCAGTGTGTGTGTAATCACGGGCTTTGCTGAACACCCCAAACCCTGCGGTTACCTGATGCTCTTAGAAAAATGACCAAAGTTCTCAATATGCCTTtgtaaacaaaagataaaattctaagccccccaaccaacttaatggactcccctcttggccaaagggatcccaaagaaacctgaaaaacgagttcaggccatgacagggagagggggttgggcaggcctcactacaccctcctttcctggagttcatgaccaacattaacataaaaacagagctcctaaggctgaccaaacagactgttcatagcaataagatagcaaattcccaccagactctagtagagcatcacatgacggccagcaggccctgaagaaatatatttctttgacagattttgaaatggcccagcaaagctgtctgttggggaatcttgcactctgtggagaatccctgtccgtcactaggtctttctggagagtctgacacctttcaaggccctgatagtagacattcacattcactctctctgaagcctgctagccggaggcttcatccacaagaaccttggcttccacaaccccctttattttcactcaagctgatatcaagtcttcaggcagatcttaactctgttttacccaacggccaatcaggaaatcctgtaatccacctgtgacctggaaggccccacaccccgcttcaagatgtcccacctttctgggccaaatcaatgtataccttccagatattgctttatgtcttttcttgtaacttcagtctccctaaaatgtataaaaccaagctataccctgtcaccttgggtgtgtgttcttgggacctcctgaggctgtgccctgggccatgtccttaaccttggcaaaaatcaacct-ctaagttgattgagacctgcctcaaatacattttggtttacaCCTTTGAACAGGCAACCACCTGCCATGctgggcctggcctggctttgcccattgccccagcgtaaccgttactcgtgtccccctattcttggaaatgtcctggtttggacatattatgtgaagcacatggtcaccctaCATGCGAGGCCACACCTGATCTGGGCCTGAGTCTCCTCCTGGACCCGTCTCGCAGCCTCCACTCTGCCTCTCATGCCTCAGCCTTGCTGATCTCTGGAAGCCCCAGGCACGCTCCGCCCCAGGCACCCTCCACCCCAGGCACATGCCTCCCAGCTTCCACCTGTCTTGGCTCAGGTGTCTGCCTTAGGAAAGCCCTCCCAGTCTGGAGAAGCATCCTGCCTTTCCTCGCTGGGGCAAAAGCAGAGACCCTTGGACATATCTAAGCAGAGTTTAGTGCCAGGCCAGCCGGGGACCCTACTCAGCTCAGCAGGAGGCTCAGCGATGGAGGCAGAGCAGCTGGAAGAACATCTCAGATGGTTTGTCCAAGAGACGGGCACACACCAGTGCGTGCCGCAGCCCTGCCCGGGTCCCCCTCCCACCCCAGGCAGGCACACACCAGCGCATGCCATAGCCCTGCCCGGGCCCCCTCCCACCCC s panTro1.chr6 161374848 1625 + 161576975 GTGACTGTCCAGGGTGCAGTGAGGGGTTGCATGACGGGTGAGTCTTCCCCTGCAGCAGTGCGTCCCGATGGACGGGGTAGACCAGGAGAAATGGCTGTGGTCGTAGCTAGATGGCACACTTCTCTGAAGGTCCAGTGTGTGTGTAGTCACGGGCTTTGCTGAACACCCCAAACCCTGCGGTTACCTGATGCTCTTAGAAAAATGACCAAAGTTCTCAATATGCCTTtgtaaacaaaagataaaattctaagccccccaaccaacttaatggactcccctcttggccaaagggatcccaaagaaacctgaaaaatgagttcaggccgtgacagggagagggggttgggcaggcctcactacaccctcctttcctggagttcatgaccaacattaacataaaaacagagctcctaaggctgaccaaacagactgttcgtagcaataagatagcaaattcccaccagactctagtagagcatcacatgacggccagcaggccctgaagaaatatatttctttgacagattttgaaatggcccagcaaagctgtctgttggggaatcttgcactctgtggagaatccctgtccatcactaggtctttctggagagtctgacacctttcaaggccctgatagtagacattcacattcactctctctgaagcctgctagccggaggcttcatccacaagaaccttggcttccacaaccccctttattttcactcaagctgatttcaagtcttcaggcagatcttaactctgttttacccaactgccaatcaggaaatcctgtaatccacctgtgacctggaaggccccacaccccgcttcgagatgtcccacctttctgggccaaatcaatgtataccttccagatattgctttatgtcttttcctgtaacttcagtctccctaaaatgtataaaaccaagctataccctgtcaccttgggtgtgtgttcttgggacctcctgaggcagtgccctgggccatgtccttaaccttggcaaaaatcaaccttctaagttgattgaaacctgcctcaaatacattttggtttacaCCTTTGAACAGGCAACCACCTGCCATGctgggcctggcctggctttgcccattgccccagcgtaaccgttactcgtgtccccctattcttggaaatgtcctggtttggacatattatgtgaagcacatggtcaccctaCATGCGAGGCCACACCCGATCTGGGCCTGAGTCTCCTCCTGGACCCATCTCGCAGCCTCCACTCTGCCTCTCATGCCTCAGCCTTGCTGATCTCTGGAAGCCCCAGGCATGCTCCGCCCCAGGCACCCTCTGCCCCAGGCACATGCCTCCCAGCTTCCACCTGTCTTGGCTCAGGTGTCTGCCTTAGGAAAGCCCTCCCAGTCTGGAGAAGCATCCTGCCTTTCCTCGCTGGGGCAAAAGCCGAGACCCTTGGACATATCTAAGCAGAGTTTAGTGCCAGGCCAGCCGGGGACCCTACTCAGCTCAGCAGGAGGCTCAGCGATGGAGGCAGAGCAGCTGGAAGAACATCTCAGATGGTTTGTCCAAGAGACGGGCACACACCAGTGC-------------------------------------------------------ATGCCGCAGCCCTGCCCGGGGGCCCTCCCACCCC a score=15506.0 s hg17.chr7_random 13467 97 + 778964 AGGCAGGTGGGGCTCACAGAGACAGGCCACCAGCCTCTCCCTTCTGCTTCTGACCAGTTCTTCCAGGAGGTGTCTCTTTCTCCTCTCCTGGGGCCCT s panTro1.chr6 161376473 97 + 161576975 AGGCAGGTGGGGCTCACAGAGACAGGCCACCAGCCTCTCCCTTCTGCTTCTGACCAGTTCTTCCAGGAGGTGTCTCTTTCTCCTCTCCTGGGGCCCT s rn3.chr13 30207139 87 - 111348958 AGGCAGCAGGAGCTAGCACAGGCCCAGCATCAGCCTTCCACTTCTGCTTCCGATCAGTCTCCTCATGAGGGCTCT----------TCACGGGACCCT a score=47570.0 s hg17.chr7_random 13564 510 + 778964 GACTGTTGCCATCCTCCAATTTCTCAGACCAACCAGGCTCAGAGTTCTTTAAACTTCCCTTTACAAGGAGGTGTTGCCACTTTCTTGGAGAACTATTCTTAGCTTAATATAATATGATGCGATAGGATACAATATTTAGAGAGATTATTTGATGTCTGCCCCTCCAGTGAATGCCCAGCATTGTGGGTTTGTACAGCAGGTGTTCCCTGTTTGTTGATGAGCAAGTGGGCAGATGTATGAGTTACTCCTGGTTCCACTCACTCCAGTCTGGAGGGTTCAGCCAGCGGCTGCCAGGACAGCAGGGCCCCACCCTGAGCACTCGCCCTCAAGCCCAGCCCAGAGCCCACGCTTCGGCTCCACAGGCAGGGAGCAGGTCAGTGGGGCTGCCCTCCAGACCCTTCCCCTCGCCAGGGCGTCCTCACTTTCTGGGTTATGCTCTCCTCTCTGATTCCCTTTCAAAGGAGAAGCAAGAGGTGCTAAATCGCTAACATTTGTGGGTGAATTGGTAAA s panTro1.chr6 161376570 510 + 161576975 GACTGTTGCCATCCTCCAATTTCTCAGACCAACCAGGCTCAGAGTTCTTTAAACTTCCCTTTACAAGGAGGTGTTGCCACTTTCTTGGAGAACTATTCTTAGCTTAATATAATATGATGCGATAGGATACAATATTTAGAGAGATTATTTGATGTCTGCCCCTCCAGTGAATGCCTAGCATTGTGGGTTTGTACAGCAGGTGTTCCCTGTTTGTTGATGAGCAAGCGGGCAGATGTATGAGTTACTCCTGGTTCCACTCACTCCAGTCTGGAGGGTTCAGCCAGTGGCTGCCAGGACAGCAGGGCCCCTCCCTGAGCACTCGCCCTCAAGCCCAGCCCAGAGCCCATGCTTCAGCTCCACAGGCAGGGAGCAGGTCAGTGGGGCTGCCCTCCAGACCCTTCCCCTCGCCAGGGCCTCCTCACTTTCTGGGTTATGCTCTCCTCTCCGATTCCCTTTCAAAGGAGAAGCAAGAGGTGCTAAATCGCTAACATTTGTGGGTGAATTGGTAAA a score=31307.0 s hg17.chr7_random 14074 86 + 778964 CCAGGACTTTCCTTTTTGAGAGATGAGGCCCGGGTGGGGCCTGGTGGGAGGAGGGAGAAAGCTGTCAGCTGAGCCTCCCTGGTCAT s panTro1.chr6 161377080 86 + 161576975 CCAGGACTTTCCTTTTTGAGAGCTGAGGCCCGGGTGGGGCCTGGTGGGAGGAGGGAGAAAGCTGTCAGCTGAGCCTCCCTGGTCAT s mm5.chr18 29681407 85 - 91083707 CCAGTGCTCTCATTCCTAGGGGCTGGGTCCC-AGTGAGGCCAGTGGAGAGGAGAGAGAAAGCTCTCAGCTGGGCCTTGCCGGTTAT s rn3.chr18 30422846 85 - 87338544 CCAGCACTCTCCTTCCCAGGGACTGAGTCCC-AGTGAGGCCAGGGCAGAGGAGAGAGAAAGCTCTCAGCTGAGCCTTGCTGGTTAT a score=33833.0 s hg17.chr7_random 14160 362 + 778964 CATCGGTAGGCATCGGTCATGCATTTATCACTTGTCCAAAATTCCGAGGGTGTGGGGGATCCAGGGAGCATGGAGAAGGGGAGAGGGGGTGAAAGGAGGGTCCTGGGAGTGACGGGGGACCCTGCAGGCCGGGAGGCCAGCGATTCCAGGCCAGAGGGTCCTGGACTTCAGAGAGAAGCAGGGTCTGGTTTGACGGCCATGCCACCTTTCCAAGTGGCTTTTTAGGGAGAAGAGAAGAAAACAAACAACATTAAAGGAACAAAAGAGGGAACTATTTTTAGCTGCGTGTGAAGCAGAAATAGAAATCTCATTGGGGAGTAAATTGGTGAATGAGACTAAATTTAAAAATTTGCTTAGAAATG s panTro1.chr6 161377166 362 + 161576975 CATCGGTAGGCATCGGTCATGCATTTATCACGTGTCCAAAATTCCGAGGGTGTGGGGGATCCAGGGAGCATGGAGAAGGGGAGAGGGGGTGAAAGGAGGGTCCTGGGAGTGACGGGGGACCCTGCAGGCCGGGAGGCCAGCGATTCCAGGCCAGAGGGTCCTGGACTTCAGAGAGAAGCAGGGTCTGGTTTGACGGCCATGCCACCTTTCCAAGTGGCTTTTTAGGGAAAAGAGAAGAAAACAAACAACATTAAAGGAACAAAAGAGGGAACTATTTTTAGCTGCGTGTGAAGCAGAAATAGAAATCTCATTGAGGAGTAAATTGGTGAATGAGACCAAATTTAAAAGTTTGCTTAGAAATG a score=40673.0 s hg17.chr7_random 14522 313 + 778964 A-ATAGGGAAGGATAATTAATGACTCA-AGTGGTCCTTTAAATAATTAATAATGTTCTCCTGGGAGTAATTAAAGCATCACATGA----AAGTGAGGCATTTTCTATGCCTAATTGTTCTCAGTTACTATTTTTACACACAAAACCAGAGTTTTTA----CAATATCAAGAACTTTTGTCCTCGTATTTTCATTAAAATACTGAT------TTTTTGTTCTTAATCTTTTTTCCCAT-TTTCTAACCTATTTTGCTAGGTCCTCTCCCCAGTTCTGAATGCCCTTTGGAAGAGGATGGGGACAGACAGATGAGGGTGACGGGATGGAGAT s panTro1.chr6 161377528 315 + 161576975 ATATAGGGAAGGATAATTAATGACTCAGAGTGGCCCTTTAAATAATTAATAATGTTCTCCTGGGAGTAATTAAAGCATCACATGA----AAGTGAGGCATTTTCTATGCCTAATTGTTCTCAGTTACTATTTTTACACACAAAACCAGAGTTTTTA----CAATATCAAGAACTTTTGTCCTCGTATTTTCATTAAAATACTGAT------TTTTTGTTCTTAATCTTTTTTCCCAT-TTTCTAACCTATTTTGCTAGGTCCTCTCCCCAGTTCTGAATGCCCTTTGGAAGAGGATGGGGACAGACAGATGAGGGTGACGGGATGGAGAT s canFam1.chr16 22848799 304 + 60307850 -AACAGGGAAAGATCAGTAATTACTCC-AGTG---CCTTAAATTATTGATAATGTCCCCTCAGGAGCAGGGGATGGACCACATGACAGTAAGTAAGGGCTTTCCTATGT----TTGCCCTTTTATAACATT---------AAAACCAGGAGTATTAATGGAAATATCAGACAGCTCTGTCCTCATCCTTTTATCACAATATTGCTGCGTAATCTCTGTCCTGCA--CTCTTCCCCATACTTTTCATCTATTCTGTT-GGTCCTCTCTGTAATTCCGCATGTGACTTGGAAA-----GGGGGTGAAAGGTTAGGGGCCAGTGTATGACGTT a score=10489.0 s hg17.chr7_random 14835 113 + 778964 ATTCCCTCAATATAAGAGTTTTCAAAGTGTTATTTGCTGCCAATTACTAAGCCATGCTTTCCCAAGGCATAACGCTGACAGTGGCTGATTAACGTCTCCCTTGCTGGCGTCCT s panTro1.chr6 161377843 113 + 161576975 ATTCCCTCAACATAAGAGTTTTCAAAGTGTTATTTGCTGCCAATTACTAAGCCATGCTTTCCCAAGGCATAACGCTGACAGTGGCTGATTAACGTCTCCCTCGCTGGCGTCCT a score=12668.0 s hg17.chr7_random 14948 114 + 778964 GAGGAGCAGGGTCTTCTCTTTTATTTTCAACCCTGTGGCAATC-------AAGAGCCCTGGGCACCCAGAGGCCCAGGTGTGCC--GGCTCTACCTGGAAGCATTT--------TCTGATCTCTCCGGACA s panTro1.chr6 161377956 114 + 161576975 GAGGAGCAGGGTCTTCTCTTCTATTTTCAACCCTGTGGCAATC-------AAGAGCCCTGGGCACCCAGAGGCCCAGGTGTGCC--GGCTCTACCTGGAGGCATTT--------TCTGATCTCTCCGGACA s canFam1.chr16 22849440 123 + 60307850 GATCCCCAAGCTCCCAACTGTTATTTTTAA-CCTGTGGTAGCCAAGGAAAaagagccttgggaatgca-------aattttgccaaagccctgccatatgacactgcattataattttacctcttgggaca a score=32481.0 s hg17.chr7_random 15062 224 + 778964 CAAATCTCCTCATTTGTAAGGGGAACCAGTTGAAGGGCTGGTAGACTATTTCAGTGACCCC----CAGAACCCGCAAAGGCAAACTAGGGTGACATTTAAAAACTG-AATTTAGCTTCATTTTCATATTCACTTGGAGTCTTTAACAAAATAAACTGACATTATGAGGCGTTTTGCCTCCTATGCTCTCAAAACCGGAAATAAAACCCCTTATAGTTTCTTCTTTTTCA-------- s panTro1.chr6 161378070 225 + 161576975 CAAATCTCCTCATTTGTAAGGGGAACCAGTTGAAGGGCTGGTAGACTATTTCAGTGACCCC----CAGGACCTGCAAAGGCAAACTAGGGTGACATTTAAAAACTGAAATTTAGCTTCATTTTCATATTCACTTGGAGTCTTTAGCAAAATAAACTGACATTATGAGGCGTTTTGCCTCCTATGCTCTCAAAACCGGAAATAAAACCCCTTATAGTTTCTTCTTTTGCA-------- s rn3.chr6 4291460 205 - 147642806 CAGATCTCCCCATTTGCAAAATGTGTCTGATGAAGGGTTGGTGGCTCATCC---TGACTCCTGTTCACACCCTGCCAA-GTAAACTCGATTCCTGTTTCAAATGGA-AGGTGTGTGTGCGTTTCAAATT-GTTATGAGTCTTTA-------AAATGGAAAT------GGGTTTTAACTAATATTCTGTCAAAGCTGG---TAAAG--CCTTGTGATTTGTTTTATTGCA-------- s canFam1.chr16 22849563 206 + 60307850 cgagttttctcctttgtaaaatgagttagtgaacagggtaataaactcttctgactacctc----taacactctGAAA-GCAAGCtaaattaatatttaaaaatta-GAGTTACCTGCATTTTCATATT-TGTTGCAATCTTG--------AAAAGAACAGAATGAGGCTTTTTACCTACT---CTATCAAAGCTGAA-------------ATGATTTCTTTTCTTATATTTAGGCG a score=32646.0 s hg17.chr7_random 15286 227 + 778964 TCTTTGGAAGACAGAAGCCCTGGAATGTTGGCACACCTGGGATCAG---GAGCACTCCTGTGGCCACAGCTGTGTCTCGGCTGTGCCGTGGGATTCTGTCCTTACTCCAAGGATCAGCTCCTCATCTGAAGGAAAAAGGTATTACAGTGACAGCTCACTCATCAAAAGATGACTTTTCCAGGAAAGTCGCTGTCTGAAAATTGCCAAGACCAGGGACATTTGTAATAGCC s panTro1.chr6 161378295 227 + 161576975 TCTTTGGAAGACAGAAGCCCTGGAATGTTGGCACACCTGGGATCAG---GAGCACTCCTGTGGCCACAGCTGTGTCTCGGCTGCGCCGTGGGATTCTGTCCTTACTCCAAGGATCAGCTCCTCATCTGAAGGAAAAAGGTATTACAGTGACAGCTCACTCATCAAAAGATGACTTTTCCAGGAAAGTCGCTGTCTGAAAATTGCCAAGACCAGGGACATTTGTAATAGCC s canFam1.chr16 22849769 203 + 60307850 TCTAGAGAAGACAAAAACTCAGGACTTCTTTTACACCTGGAAGCAGTGAAAACAAT-------CTATTACGGTGGCTGGCCTGCAC--------------------ACCAGTGTCAGTTCTTTATCTGAAAGAGAAAAGCATCGCAGTGACCATTCACTTAGCCAACAATGACCTTTCCAGGAGAGTAGCTGCATGGCAAATGCCACCGGCAGGAAAGCTGGTGAATGCC a score=15651.0 s hg17.chr7_random 15513 162 + 778964 CGGTTCTAGGAAAGCCAGGAGGAAACTGCTCTCTGACAGGGAGGCCGTGAATGCTCCGCCACGCAGAGCTGAGGTCTGGCTTAGACCCTGAGCCCAGCCACCTCTGGCAGTGGGGACCCTGTCTCTTCCAAAGGCTGTGGGCCCAGCTGACCTCATGGCTGG s panTro1.chr6 161378522 162 + 161576975 CGGTTCTAGGAAAGCCAGGAGGAAACTGCTCTCTGACAGGGAGGCCGTGAATGCTCCGCCACGCAGAGCTGAGGTCTGGCTTAGACCCTGAGCCCAGCCACCTCTGGCAGTGGGGACCCTGTCTCTTCCAAAGGCTGTGGGCCCAGCTGACCTCATGGCTGG a score=69184.0 s hg17.chr7_random 15675 517 + 778964 CCCTGCTCACCC-CCAACCCTCAGTCCTTTCAGACTCCAGGGAT-GTGTCTGGAATTCCATAATCACAGTTGGAGCTTCTAGCCTAGGGCTGCGGTCAGCGTTTAAGCACAGATGCCACTGCGGAGGGGAACTCTTTACATTGGAGAGCAGAGGACAGGAGTGTGAGGAAATGAGGGGTGAATGAGCCACAAAAAAGGGGGGC-------CGGGGATAGAGATTCTCAGGGTAAATTTGTCA------ACCTCAGAATTTTTCTGTGACTTTACTTTCAATGAAGCT--------------CAATTTTGT-------------GAAAGCTGAT---------------------------------------------------------------------------------GTTACTTCTGAAGTCTTTAACAGAACGATGCATACCTGTGGAAATACATTTTCTT----TCCACTTTTTCTATAATCTCTATTTATAGTAAATGTGTTAAATAGCTACCTATTTTAGAGCATGTGCAATGTGCCAAGCCCCAAGCCAGGTACTAGGAACTCTGAATAAC----------TTCCTGTCTCGTAGGGACTGACACTT-GGGGACTAGCAGAACCTTTTAGGAAAAGCCACACA s panTro1.chr6 161378684 515 + 161576975 CCCTGCTCTCCC-CCATCCCACAGTCCTTTCAGACTCCAGGGAT-GTGTCTGGAATTCC-TAATGACAGTTGGAGCTTCTAGCCTAGGGCTGCGGTCAGCGTTTAAGCACAGATGCCACTGCGGAGGGGAACTCTTTA-ATTGGAGAGCAGAGGACAGGAGTGTGAGGAAATGAGGGGTGAATGAGCCACAAAAAAGGGGGGC-------CGGGGATAGAGATTCTCAGGGTAAATTTGTCA------ACCTCAGAATTTTTCTGTGACTTTACTTTCAATGAAGCT--------------CAATTTTGT-------------GAAAGCTGAT---------------------------------------------------------------------------------GTTACTTCTGAAGTCTTTAACAGAACGATGCATACCTGTGGAAATACATTTTCTT----TCCACTTTTTCTATAATCTCTATTTATAGTAAATGTGTTAAATAGCTACTTATTTTAGAGCATGTGCAATGTGCCAAGCCCCAAGCCAGGTACTAGGACCTCTGAATAAC----------TTCCTGTCTCGTAGGGACTGACACTT-GGGGACTAGCAGAACCTTTTAGGAAAAGCCACACA s canFam1.chr16 22851137 625 + 60307850 CCCTACTTACCCACTGTCCCTTAGTCTTTTTAGACTTCACACCTGGTGCCTGGAGCTCCGTGGGCAGGGTTTGGGCTTCTAACCCAA------GGTCAGCATTTAGATACAGATGCTG---------------------GGTGGGTAGGAGGGGAGGGTCGTGCAGAAAAAGTAGG---GAGTGACCCAGGAAAGAGGAGAGAGAAGATGAGGAGATAGAGGACCTTAGGATAAAGTTGGTAACTTGGACTTCAAAATTTTGCTGTGACTTTACCCTCACTTGAGCTAGTTTCACGTTAACCAATTTTGTACAGTAAAATACAGAGCTCTAATCTGGGTATTTTGTATTTTTTTTCTATTTCTGTGTATTTTTGCTAAAGTTTCTAAATAATTATCTTATAAGCAAAAATAAGAGTTGTTTTTGAAGTCTTTAATGGAACAATATATACCTGTAGAAATATCTTTTGTTTGGCTTAGTTTTTTCCTCAGTTTCTACCTATATTAAATTTCATAAATATTTAGACATTTGGTAGTACATCTATTATTCAATGGGCCAAGCCAGGTGCTAGGGAATATGAATAACCAGAGGCCCATCTTTGCCTGTCAGGGGCTGGCACTTCACGGGCTAGCTCAGTATTTCAGGAAAAAACATGCA a score=17979.0 s hg17.chr7_random 16192 201 + 778964 CCCtatattagtcagagttctccagagagacagaaccaacaggacatgatgtagatatgggtatgtgagagggggattattgggggcctaaaccggctcacagaattacggagactgtgatgtccggtgatgtgccctctgcaagctggagcaccagggaggctggtggtgcaattcagtccaaaggcccgagagccaggg s panTro1.chr6 161379199 201 + 161576975 CCCtgtgttagtcagagttctccagagagacagaaccaacaggacatgacgtagatatgggtatgtgagaggggggttactgggggcctgaaccggctcacacagttacggagactgtgaggtccggtgatgtgccctctgcaagctggagcaccagggaggctggtggtgcaattcagtccaaaggcccgagagccaggg a score=14854.0 s hg17.chr7_random 16393 117 + 778964 gtcccatggtgtaattctcCGTCCAGGGGTCCCATGGTGTAATTCTCCGTCCTGGGGTCCCATGGTGTAATTCTCCATCCAGCGGTCCCATGGTGTAATTCTCCGTCCAGGGGTCCC s panTro1.chr6 161379400 117 + 161576975 gtcccagggtgtaattctccatccaggggtccCACGGTGTAATTCTCCATCCAGGGGTCCCACGGTGTAATTCTCCGTCCGGGGGTCCCACGGTGTAATTCTCCATCCAGGGGTCCC s mm5.chr18 53211797 114 + 91083707 GTCCTAGATCTCAATCCTCCTTCCCACTGTCCTAGAGTGCAGTCCTCCTGACT---ATCCTAGAGTGTACTCCTCCTTCTGACTGTCCTAGACTGCACTCCTCCTTCTGACTGTCCT a score=1619.0 s hg17.chr7_random 16510 7 + 778964 ATGGTGA s panTro1.chr6 161379517 7 + 161576975 ACGGTGT s mm5.chr18 53211911 7 + 91083707 AGAGTGC s fr1.chrUn 307147639 7 + 349519338 ACAGTGA a score=11624.0 s hg17.chr7_random 16517 118 + 778964 AATTCTCCGTCCAGGGGTCCCATGGTGTAATTCTCCGTCCAGGGGTCCCATGGTATAATTCTCCATCGAGCGGTCCCATGGTGTAATTCTCCGTCCAGGGGTCCCATGGTGAAATTCT s panTro1.chr6 161379524 118 + 161576975 AATTCTCCGTCCGGGGGTCCCGTGGTGTAATTCTCCGTCCGGGGGTCCCGTGGTGTAATTCTCCGTCCGGGGGTCCCGTGGTGTAATTCTCCGTCCGGGGGTCCCACGGTGTAATTCT s mm5.chr18 53211809 115 + 91083707 AATCCTCCTTCCCACTGTCCTAGAGTGCAGTCCTC---CTGACTATCCTAGAGTGTACTCCTCCTTCTGACTGTCCTAGACTGCACTCCTCCTTCTGACTGTCCTAGAGTGCAGTCCT s fr1.chrUn 307147646 72 + 349519338 GTGTCCCGGTCCGAGTGT--------------------CCGAGTGTCCCG--------------GTCCGAGTGTC------TGAGTGTCCCGGTCCGAGTGTCCGAGTGTCC------ a score=7598.0 s hg17.chr7_random 16635 71 + 778964 CCGTCCAGGGGTCCCATGGTGTAATTCTCCGTCCAGGGGTCCCATGGTGAAATTCTCCGTCCAGCGGTCCC s panTro1.chr6 161379642 71 + 161576975 CCGCCCCGGGGTCCCGTGGTGTAATTCTCCGTCCGGGGGTCCCACGGTGTAATTCTCCGCCCCGGGGTCCC s fr1.chrUn 307147718 57 + 349519338 CGGTCCGAGTGTCCCG--------------GTCCGAGTGTCCCGGTCCGAGTGTCCCCGTCCGAGTGTCCC a score=4741.0 s hg17.chr7_random 16706 27 + 778964 ATGGTGTAATTCTCCGTCCAGGGGTCC s panTro1.chr6 161379713 27 + 161576975 ACGGTGTAATTCTCCGTCCGGGGGTCC s fr1.chrUn 307147775 27 + 349519338 GGTCCGAGTGTCCCCGTCCGAGTGTCC s danRer1.chrNA 73696630 27 + 390413307 ATGTTGTAGTTCCCCTGCTGTAGTTCC a score=4636.0 s hg17.chr7_random 16733 40 + 778964 CATGGTATAATTCTCCATCGAGCGGTCCCATGGTGTAATT s panTro1.chr6 161379740 40 + 161576975 CACGGTGTAATTCTCCGTCCGGGGGTCCCGTGGTGTAATT s danRer1.chrNA 73696657 40 + 390413307 CCTGCTGTAGTTCCTCTGCTGTAGTTCCTCTGCTGTAGTT a score=864.0 s hg17.chr7_random 16733 42 + 778964 CATGGTATAATTCTCCATCGAGCGGTCCCATGGTGTAATTCT s danRer1.chrNA 73696657 42 + 390413307 CCTGCTGTAGTTCCTCTGCTGTAGTTCCTCTGCTGTAGTTCC a score=667.0 s hg17.chr7_random 16773 2 + 778964 CT s panTro1.chr6 161379780 2 + 161576975 CT s mm5.chr12 97023448 2 + 115071072 CC s danRer1.chrNA 73696697 2 + 390413307 CC a score=16875.0 s hg17.chr7_random 16775 199 + 778964 CCGTCCAGGGGTCCCAAGGTGAAATTCTCCGTCCAGG-GTTCCCATGGTGTAATTCTCCGTCCAGGGTTCCCA---TGGTGTAATTCTCCGTCCAGGGGTCCCATGGTGAAATTCTCCGTCCAGGGGTC----CCATG---GTGTAATTCTCCGTCCAGGGGTCCCATGGTGTAATTCTCCGTCCAGGGGTCCCATGGTGTAATTCTCCG s panTro1.chr6 161379782 199 + 161576975 CCGTCCGGGGGTCCCGTGGTGTAATTCTCCGTCCGGG-GGTCCCGTAGTGTAATTCTCCGTCCGGGGGTCCCA---CGGTGTAATTCTCCGTCCGGGGGTCCCGTGGTGTAATTCTCCGCCCCGGGGTC----CCGTG---GTGTAATTCTCCGTCCGGGGGTCCCGTGGTGTAATTCTCCGTCCGGGGGTCCCGTGGTGTAATTCTCCG s mm5.chr12 97023450 199 + 115071072 CCAGCCAGGTGTCCCCAGCCAGGTGTCCCTAGCCAGGTGTTCCCAGCCAGGTGTTCCCAGCCAGGTGTTCCCAGCCAGGTG----TCCCCAGCCAGGTGTTCCCAGCCAGGTGTCCCCAGCCAGGTGTC----CCCAG---CCAGGTGTCCCCAGCCAGGTGTCCCTAGCCAGGTGTTCCCAGCCAGGTGTTCCCAGCCAGGTGTTCCCA s fr1.chrUn 307147802 116 + 349519338 CCGTCCGAGTGTCT--------------------------------------------------------------GAGTG--------------------------------TCCCCGTCCGAGTGTCTGGTCCGAGTGTCCGAGTGTCCCCGTCCGAGTGTCCCAGTCCGAGTGTCCCCGTCCGAGTGTCCCCGTCCGAGTGTCCCCG s danRer1.chrNA 73696699 199 + 390413307 TCTGCTGTAGTTCCTCTGCTGTAGTTCCCCTGCTGTA-GTTCCTCTGTTGTAGTTCCTCTGCTGTAGTTCCTC---TGCTGTAGTTCCTCTGCTGTAGTTCCTCTGCTGTAGTTCCTCTGCTGTAGTTC----CCCTG---CTGTAGTTCATCTGCTGTAGTTCCCCTGCTGTAGTTCCTCTGCTGTAGTTCCTCTGCTGTAGTTCCTCT a score=24985.0 s hg17.chr7_random 16974 264 + 778964 TCCAGGGGTCCCATGGTGTAATTCTCCGTCCAGGGGTCCCATGGTGTAATTCTCCGTCCAGGGGTCCCATGGTGTAATTC--TCCGTCCAGGGGTCCCATGGTGTAATTCTCCGTCCAGGGGTCCCATGGTATAATTCTCCATCGAGCGGTCCCATGGTGTAATTCTCCGTCCAGGGGTCCCATGGTGTAATTCTCCGTCCAGGGGTCCC--------------------ATGGTGAAATTCTCCGTCCAGGGGTCCCATGGTGTAATTCTCC---GTCCAGGGGTCCC s panTro1.chr6 161381129 264 + 161576975 TCCGGGGGTCCCACGGTGTAATTCTCCGTCCGGGGGTCCCGTGGTGTAATTCTCCATCCGGGGGTCCCACGGTGTAATTC--TCCGTCCGGGGGTCCCACGGTGTAATTCTCCGTCCGGGGGTCCCGTGGTGTAATTCTCCATCCGGGGGTCCCGTGGTGTAATTCTCCGTCCGGGGGTCCCACGGTGTAATTCTCCGTCCGGGGGTCCC--------------------GTGGTGTAATTCTCCATCCGGGGGTCCCACGGTGTAATTCTCC---GTCCGGGGGTCCC s mm5.chr12 97023649 222 + 115071072 GCCAGGTGTCCCCAGCCAGGTGTTCCCAGCCAGGTGTCCCCAGCCAGGTGTCCCCAGCCAGGTGTTCCCAGCCAGGTGTC--CCCAGCCAGGTGTCCCAAGCCAGGTGTCTCCAGCCAGGTGTCC------------------------------------------CCAGCCAGGTGTCCCCAGCCAGGTGTCTCCAGCCAGGTGTCCC--------------------CAGCCAGGTGTCCCCAGCCAGGTGTCCCCAGCCAGGTGTCCCC---AGCCAGGTGTCCT s fr1.chrUn 307147918 173 + 349519338 TCCGAGTGTCCCAGTCCGAGTGTCCCCGTCCGAGTGTCCCA--------------------------------------------GTCCGAGTGTCCGA------GTGTCCCCGTCTGAGTGTCC----------------------------------GAGTGTCCCGGTCCGGGTGTC------TGAGTGTCCCAGTCCGAGTGTC--------------------------TGAGTGTCCCCGGTCTGAGTGTCCCCGGTCTGAGTGTCCCCGGTCTGAGTGTCCC s danRer1.chrNA 73696898 286 + 390413307 GCTGTAGTTCCTCTGCTGTAGTTCCCCTGCTGTAGTTCCCCTGCTGTAGTTCCTCTGCTGTAGTTCCCCTGCTGTAGTTCCTCTCTGCTGTAGCTCCTCTGCTGTAGTTCCCCTGCTGTAGTTCCCCTGCTGTAGTTCCTCTGCTGTAGTTCCTCTGCTGTAGTTCCCCTGCTGTAGTTCCTCTGCTGTAGTTCCCCTGCTGTAGTTCCTCTGCTGTAGTAGTTCCCCTGCTGCTGTAGTTCCTCTGCTGTAGTTCCTCTGCTGTAGTTCCCC---TGCTGTAGTTCCT a score=1822.0 s hg17.chr7_random 17238 15 + 778964 ATGGTGTAATTCTCC s panTro1.chr6 161381393 15 + 161576975 ACGGTGTAATTCTCC s mm5.chr12 97023871 15 + 115071072 CAGCCAGGTGTCCCC s danRer1.chrNA 73697184 15 + 390413307 CTGCTGTAGTTCCTC a score=6473.0 s hg17.chr7_random 17253 61 + 778964 GTccaggggtcccatggtgtaattctcagtcctgggctgagggcttgcgagtccggggtct s panTro1.chr6 161381408 61 + 161576975 GTCCgggggtcccacggtgtaattctccgtcctgggctgagggcttgcgagtccgggatct s mm5.chr12 97023886 57 + 115071072 AGCCAGGTATCATGGGGTTTTTTTCTTC-TCCAAGCCTAAGAAGTTG---GCCCGTGGCCT a score=30226.0 s hg17.chr7_random 17314 327 + 778964 gccaaggtaaatccccaagtcctggggtccaaaagccgaggagcctggagctccaaagtccacaggcaggagaagcagtgtcccggctctggaagggagagaattctccttccctctacctttttgtttcctctgggccccagccgattgggcagtgccagcccacagtgagagcagatctgtcccactccgtcctccgacccatgcgctgatctccccagagacacccagaaatcatgcttcaccagctttacagatgtcccgaatccagccaagtagatgcctaaaattaaccatcaGACACGCACATGTGTACCGCGCCTCCTT s panTro1.chr6 161381469 327 + 161576975 gccaaggtaaatccccaagtcctggggtccaaaagccgaggagcctggagctccgaagtccacaggcaggagaagcagtgtcccggctctggaagggagagaattctccttccctccacctttttgtttcctctgggccccaaccgattgggcagtgccagcccacagtgagagcagatctgtcccactccgtcctccgacccatgcgctgatctccccagagacacccagaaatcatgcttcaccagcgttacaggtgtcccgaatccagtcaagtagatgcataaaattaaccatcaGACACGCACATGTGTACCGCGTCTCCTT a score=25110.0 s hg17.chr7_random 17641 150 + 778964 GAGGAAAGATTCTATCCCCCGTATT-TTGCTGAGATTTGTGGAGGACTCTAGGATATG-ACATTTCCCACGGGCACAACGCTCCTCTTAGAGCCTCGAACTGTGTGAGACACCAGGGACTTGC-TGCTTTTCCCGGAAGCGGGTTAGAAACTG s panTro1.chr6 161381796 150 + 161576975 GAGGAAAGATTCTATCCCCCGTATT-TTGCTGAGATTTGTGGAGGACTCTAGGATATG-ACATTTCCCACGGGCACAACGCTCCTCTTAGAGCCTCGAACTGTGTGAGACACCAGGGACTTGC-TGCTTTTCCCGGAAGCGGGTTAGAAACTG s canFam1.chr16 22851986 149 + 60307850 GATGGACAATTTTATCCCTCATTTTAGTGCTGAGATTTTCAAAAGATTTGGGGACATTCCCATTTCCTGCTGACACAATGCTCTTC----AGTCCCAAACTGTAGGAGACAGCAGTGACTTGCATGCTTTCACTGGAAGAGGGCTAAAGAATA a score=0.0 s hg17.chr7_random 17791 30 + 778964 TGCATTACAGCCTGGAGGGCAAAACTCACT a score=2461.0 s hg17.chr7_random 17791 27 + 778964 TGCATTACAGCCTGGAGGGCAAAACTC s panTro1.chr6 161381946 27 + 161576975 TGCATTACAGCCTGGGGGGCAAAACTC a score=282.0 s hg17.chr7_random 17818 3 + 778964 ACT s panTro1.chr6 161382225 3 + 161576975 ACT a score=22117.0 s hg17.chr7_random 17821 131 + 778964 AAACTGTGCATTAGAGCCTGGAGGGCAAAACTCATTTTCCAAATATTAA---CTACTCCATTCGTGACAAGTTTTGGATTTTAAAATATCAGGTGAAAAATTTTCTACACAAATAAATGGATAGGAGAAAACAA s panTro1.chr6 161382228 131 + 161576975 AAACCGTGCATTACAGCCTGGGGGGCAAAACTCATTTTCCAAGTATTAA---CTACTCCATTCGTGACAAGTTTTGGATTTTAAAATATCAGGTGAAAAATTTTCTACACAAATAAATGGATAGGAGAAAACAA s canFam1.chr16 22852135 117 + 60307850 AAAGTGT-----------CAGAAGGCAAGACTCATCTTCCAGGTATTTAATTATATTCCATTAATGACAAGTTTTGAGCTTGCAAATATCAGATGAAAAGTTTCCTACACAAATGGAT------GAGACAACAA a score=53750.0 s hg17.chr7_random 17952 583 + 778964 ATGCGTGCGATCGAACTTCATGGCAAGTGTGGGTTGTTTTCAAGAAACACCGTCctgggtgagcctgcctctgccccctccttcccctgtgctgcgcctctctggcctctgccaccctgagacagcaggaccaagccctcccctttcccctcctcctcagcccctccaggtggggacgaggaggatgaaggcctgtaGCTCTGGAGAACAGAAGGCAAGCTTGGAGGCGGTTTGCAGTGCTGCCGTCCTAGTCACCGCTCCCCGTCACACCaggaggcaaggctttcacgaggcacacttccactttgtgaacagtaaagttagtctctcttatggttttcttaataccattttctttatctgattttattgtaaaaatacagtatgtaatacatgcagcatacaaaatacgtgttacttacctattcatgtcagcggtaaggctcctgtcaacagaaggctatgagaagctaagtgttttggggagtgaaaagttctttgtggattttcagctgtgcagggggtgggaggctttgggccccaaaccccctcttcgttcaaggtccactgTATATGCTGTTCC s panTro1.chr6 161382359 583 + 161576975 ATGCGTGCGATCGAACTTCATGGCAAGTGTGGGTTGTTTTCAAGAAACACCGTCctgggtgagcctgcctctgccccctccttcccctatgctgtgcctctccggcctctgccgccctgagacagcaggaccaagccctcccctttcccctcctcctgagcccctccaggtggggacgaggaggatgaaggcctgcagctctggagaacagaaggcaagcttggaggcggtttgcagggctgccatcctagtcaccgctccccctcacaccaggaggcaaggccttcacgaggcacacttccactttgtgaacagtaaagttagtctctcttatggttttcttaataccattttctttatctgattttattgtaaaaatacagtatgtcatacatgcagcatacaaaatacgtgttacttacctattcatgtcagtggtaaggctcctgtcaacagaaggctatgagaagctaagtgttttggggagtgaaaagttctttgtggattttcagctgtgcagggggtgggaggctttgggccccaaaccccctcttcattcaaggtccactgTATATGCTGTTCC a score=174711.0 s hg17.chr7_random 18535 1312 + 778964 ATCTTTTCCATCAAGAAGCACATGGTGATGCACTTTCAAGAATCTTCTTTCTTTCGCTGTCTTCTCCAGTCC-ACAATCATTCTACGTGCCAGATGACGCTTGGTGTGCCAAAAATTCAAAAGTTTCCAGACTCAACTAAAT-GTGTGCCTGGCTGTAGTTAAAATCA---TTTTCCTCTTTGCttttt-aagttgaggcataagttacacacagtaaagggcaaagttcctaagtgggcgaccagcaagtttttcagtggcctacacttgtggaaccactcctcgaatgaagatcggaacatCGGAGGACACAGGGGCTCCCTTGCTCCACCTCCTGGCCACGATGCCACCTCCGCTGCCTGGCTCAGCCGTGCCTTTCATTTCAAAACTGCAACCAAGGCAGTG-TCAGAACATGGGCGATGGTGTCGGAATGTGGGCGACGGTGTCGGAACGTCGGCAATGGGTGACCCGGCCCAGGACTATGACTGGTGCTGCTGCTGCTCATTCTGATGGGTAACCACACGCTGATTTGTGTGACCTCTGACTGTTTTGTGTTTCCACGTCTCAGCTAGGTTGCAGACTTGCGGAGTGCAGGGCCTCGGACCTGCGTCTC--TTGTCCCCAGTGGTGCCTAAGGAGGTGCTTTCCACACAATGCTGTTTGCCAGCATAGAACTTGCAACATTCCATCCACGCCCCAGTCGTCTTCAGATGGTCTCACAAGACAGAAAAC--AAACTCCCAACTGGt-------taatcaa-------------------ttatcgacaatttacttaggacccaggatgtgcaaggtgcttt------gcttggcatctgaggagaaacagcagtgagaccacggaccatgtcctctttagta----ctttgttctaatcaactcaactgaccacacagatggaat--ttagatag-------------acagaaaataaatgaAATAAGTATTGAGCTTTAACTAAAATTCCTTTATGAGTCAACAAAACATCTAAACACATCAACTTGGACACATTGTAACGGCAGAAAATGAAGATCTGTTAAGCCCACAAATCAACCCACATTTCTCCTGAAGAATG----TTCTTATAATT-AGGGCACTTGAGCTGTGT---TAAAGTGTTTCGCTCCTCCAGCGGTCATATTCTACTTTAATTTCCTTCTTGCAGTATACCCTCCCTCCAGACCGTAAAAGATGTTGTGGTAAGGAAGTGACAAA---GAATGTGAGGAAAATGAAGAGGATACT-CAAAAGCAAGATGCAGAAACGACGATTAGATTTACCCTGTGTTGATTTCCCTACTCCATCGTATGGAGCCGAGTGTGCTGGGAAAGGTGCTTTGTTTTGTTGCCCGGG s panTro1.chr6 161382942 1292 + 161576975 ATCTTTTCCATCAAGAAGCACATGGTGATGCACTTTCAAGAATCTTCTTTCTTTCGCTGTCTTCTCCAGTCC-ACAATCATTCTACGTGCCAGATGACGCTTGGTGTGCCAAAAATTCAAAAGTTTCCAGACTCAACTAAAT-GTGTGCCTGGCTGTAGTTAAAATCA---TTTTCCTCTTTGCttttt-aagttgaggcataagttacacacagtaaagggcaaagttcctaagtgggcgaccagcaagtttttcagtggcctacacttgtggaaccactcctcgaatgaagatcggaacatCAGAGGACACAGGGGCTCCCTCGCTCCACCTCCCGGCCACGATGCCACCTCCGCTGCCTGGCTCAGCCGTGCCTTTCATTTCAAAACTGCAACCAAGGCAGTG-TCAGAACATGGGCGATGGTGTCGGAATGTGGGCGA--------------------TGGGTGCCCCGGCCCAGGACTATGACTGGTGCTGCTGCTGCTCATTCTGATGGGTAACCACACACCGATTTGTGTGACCTCTGACTGTTTTGTGTTTCCACGTCTCAGCTAGGTTGCAGACTTGCGGAGTGCAGGGCCTCGGACCTGCGTCTC--TTGTCCCCAGTGGTGCCTAAGGAGGTGCTTTCCACACAATGCCGTTTGCCAGCATAGAACTTGCAACATTCCATCCACGCCCCAGTCGTCTTCAGATGGTCTCACAAGACAGAAAAC--AAACTCCCAACTGGT-------TAATCAA-------------------TTATCGACAATTTACTTAGGACCCAGGATGTGCAAGGTGCTTT------GCTTGGCATCTGAGGAGAAACAGCAGTGAGACCACGGACCATGTCCTCTTTAGTA----CTTTGTTCTAATCAACTCAACTGACCACACAGATGGAAT--TTAGATAG-------------ACAGAAAATAAATGAAATAAGTATTGAGCTTTAACTAAAATTCCTTTATGAGTCAACAAAACAGCTAAACACATCAACTTGGACACATTGTAACGGCAGAAAATGAAGATCTGTTAAGCCCACAAATCACCCCACATTTCTCCTGAAGAATG----TTCTTATAATT-AGGGCACTTGAGCTGTGT---TAAAGTGTTTCGCTCCTCCAGCCGTCATATTCTACTTTAATTTCCTTCTTGCAGTATACCCTCCCTCCAGACCGTAAAAGATGTTGTGGTAAGGAAGTGACAAA---GAATGTGAGGAGAATGAAGAGGATACT-CAAAAGCAAGATGCAGAAACGACGATTAGATTTACCCTGTGTTGATTTCCCTACTCCGTCGTATGGAGCCGAGTGTGCTGGGAAAGGTGCTTTGTTTTGTTGCCCGGG s canFam1.chr16 22852257 1278 + 60307850 AGCTTTTCAGGCAAGAAACGACCGGTAGTGCGTTTTCTAGAACCACCTTTGCGTCCTTGCCTTCTCCAGCATGATGATACTTCCAGGCTCCAG-CAAGGCTTTGTGT-CCCGAAATGCACAAGCTTCTGGATTCAACTACATGGTGCACATGCCTGTTCTCTGAAGCACATTTTCCCTCCTTACTCTCTGAAGCAGAGCTGTAAGTTGCACAATGT-------------------------------ATGTTTTACGAATGCGTACACCAGTGGAACCAGAGCTAGA----------GCATTTCCAGAAACCAGGGGGCTCCATGGCACCCCTTCCACATCACTGTCCCGTCT-CACTCCCCAGCACAGTTGTG---------TCAAAGCTGCAA-CAAGGCAATGAATAGAACACTG--------GTTGGGCCTGGTCTGAC-------------------TGACCGTCCAGTACAGAGACCATGGCTGAAGCCTGTGCCACTCATTTTTATATTTAATCACATGCTGATGTGTGTAA-GTCTGATTGATTTAGGGCTTCACCTCCCAGCTGGGTTGTCAACTCCTCAAGTTCAGGCCAT--GACCCACATTTCTGTTGTCCCT-GTGGTGC--AAAATAGAGCCTTCAATATGGCCATATTTGCTGTGAATTAATCTGCAATATTCCACCAGTTTCCAGCCCATCTTCAGA-GATCACGCAAGATGGAAAGCCTAATTGTCCAACTGATGCTTTACTAATCAGAAAGCATTTAGGTAGCGCCCTGTAGACA--TCACTGAGAACCAGAGACATACTGCTGGCCCCACAGAGGCTTACCCTCCACAGAGGAGGACAAAT--GTCCAAGAA---------TTGTAGGAAAACCTTTGTTCTAGT-AACT-AGCCCGTTACACAGAATGAATGGCTAGATAGGTGAGTAGATAATACAGATAATACACGAAATAAGTTTTGAATTTTGGCTCAAATGCCTTTATGTGTCAATATAACAGCTGAATGCATCGACTTGGTCACATGGCAACTGCAGAAAGGGAAGATTTGTTAA-TCCACAAATCAGCCCATATTTCTCCTGAAAAATGTTCCTTCTTATAATTGAGAGCACTTCAGCTGATTACCTAAAATGTTTGTCCTTTAAACAGGTCATACTCTGCTTTAATTTTCTTTATGGAATGTACTGTCCTTCCAGCTTGTTGAATATGTT----TGAGAGGATTAAAAATAGAAATGTGGAGAAACTGGAAGAGGTCCTGAAAAAGCAGAACACAGAAAGGATGACTAAACTGCCCTTGTGCTGGTTTTCCCACGCTGTCCGTAGGGGGCAGGCATTTGGGGGAAGGTAGTCTGTGATGCCCTTTGGG a score=12854.0 s hg17.chr7_random 19847 139 + 778964 TGGTGTGTGCGGGTTATGTGAGGCTGGTCCACGTCGTGACTTGTTCCCTGGAACCTGGTGGCAGCAGTGTTTTCATAAGCACCACCGGCATGTTGACAGTTGCGTGGAGTTCAGAGTCCATGGACCCTGGGGACCATGA s panTro1.chr6 161384234 139 + 161576975 TGGCGTGTGCGGGTTATGTGAGGTTGGTCCACGTCGTGACTTGTTCCCTGGAACCTGGTGGCAGCAGTGTTTTCATAAGCACCACCGGCGTGTTGACAGTCGCGTGGAGTTCAGAGTCCATGGACCCTGGGGACCATGA a score=134126.0 s hg17.chr7_random 19986 1230 + 778964 CACCCCCGTGTGCAGGTGACAACACGCCTGCTGAAGGCCACGCAGTCAACTGGAGAAGCCAGGGCCG-GCTGCTGTGTCTATGCAGGATGCTTCTGCTC--CTCTGTCCCAGTGTGAGGTGCCATGACAACGATCAGGCCTCTCTCAGTGCCTCAGCAGCCAGCCCAGGGCT------------TGGAATGCTTTGTTGGATAGATCTGTAGGCCACATCCAGGACAACACTGAATTACCAATTTCTGTTATGTGTGCTG----AATTTTCATTGCTGTAGCCTTGAGTCCAGGCCTTCTATTCCAGCTGGCACAGGGTAGCCAGGGGCTAGTCCCTGTGGAGAGAAG-----CTGCCTGTCCACCACCTCCATCAGAGCAGGCCCTGCCTTCCTT-----CATCCTGAGAAGGCCGTGGCTTACTTTACGGCaggcacttcacatgaatatttgattcaatcccgctcattgctatggagtaaatgttatttgtattcctgttttagtgacaag-------------------gaaactgagAT-TGTGGTGGTAAAGCCTGGTAGGGAGTCCTGGTGGTCTCATTTTAGGGCCCATAACCTTAACGTCTTCTGAGGCTCCCTCCTTCTCACTCTAAGGCACTTGCCTTTCTGGTCTGCACAGAGGCAGGTCCTGTGATTTCAAGTTGCGTCGG-TGTGTCTCTGCCCTCTCACTGGCCGGCATGAAGCTCTGGATC-------------------CCAGAGAGGAGCAGACC-----GTCACAGCGGC--TTCGGGT----AAACGCTTGCGAAT-------GAGCAG-----GGAAGGAGCGGCTGATGGTGCCCAGCCTGGCACCTGCACCCAACAGGCCTGGTGCTCCCGCCTGCTGTGGAGGAGTAGGTCCCCCAGACTCTGTGACTCCGAGACCCTTCTTATCCCTAGAAGAAAACA---TCAGTTACCGGAGACAACTGTTATACTTGTAACAAA-ATGTCATTTACTCACTTGGAGACAAAGTTCAGCCCAGCCACTGCTGCAGATACTATGGACCCATTTTTTTTTTT------------------------------------------------------------------------------------------------TTAATGGAAGAAAAGGACTA-TTTAAAAAAAAATCATTGATTTTATTACTGAAGTGTACAGAAACCCAAAAGGACAAGCCGGTGTGGAGCAAACCCCCTGGTTTCCCAATGGGGCGTCGCAGCTGCTGAGCAGGATTCCAGACT--GGAGACTGGCGGCGCCCGTTGAAA---------------CTTGACTG--GCGGTTCTGCGGCTTCACAGCCTCACATGTTGCTTTGAATAAGAGAACATTCCTTTTAATATACCAATTTCCC s panTro1.chr6 161384373 1226 + 161576975 CGCCCCCGTGTGCGGGTGACAACGCGCCTGCTGAAGGCCACGCAGTCAACTGGAGAAGCCAGGGCCG-GCTGCTGTGTCTATGCAGGATGGTTCTGCTC--CTCTGTCCCAGTGTGAGGTGCCATGACAACGGTCAGGCCTCTCTCAGTGCCTCAGCAGCCAGCCCAGGGCT------------TGGAATGCTTTGTTGGATAGATCTGTAGGCCACATCCAGGACAACACTGAATTACCAATTTCTGTTATGTGTGCTG----AATTTTCATTGCTGTAGCCTTGAGTCCAGGCCTTCTGTTCCAGCTGGCACAGGGTAGCCAGGGGCTAGTCCCTGTGGAGAGAAG-----CTGCCTGTCCACCACCTCCATCAGAGCAGGCCCTGCCTTCCTT-----CATCCTGAGAAGGCCGTGGCTTACTTTACGGCaggcacttcacatgaatatttgattcaatcccgctcattgctatggagtaaatgttatttgtattcctgttttagtgacaag-------------------gaaactgagAT-TGTGGTGGTAAAGCCTGGTAGGGAGTCCTGGTGGTCTCATTTTAGGGCCCATAACCTTAACGTCTTCTGAGGCTCCCTCCTTCTCACTCTAAGGCACTTGACTTTCTGGTCTGCACAGAGGCAGGTCCTGCGATTTCAAGTTGCGTCGG-TGTGTCTCTGCCCTCTCACTGGCTGGCATGAAGCTCTGGATC-------------------CCAGAGAGGAGCCGACC-----GTCGCAGCGGC--TTCGGGT----AAATGCTTGCGAAT-------GAGCAG-----GGAATGAGCGGCTGATGGTGCCCAGCCTGGCACCTGCACCCAACAGGCCTGGTGCTCCCACCTGCTGTGGAGGAGTGGGTCCCCCAGACTCTGTGACTCCGAGACCCTTCTTATCCCTAGAAGAAAACA---TCAGTTACTGGAGACAACTGTTATACTT-TAACAAA-ATGTCATTTGCTCACTTGGAGACAAAGTTCAGCCCAGCCACTGCTGCAGATGCTATGGACCCATTTTTTTTTT---------------------------------------------------------------------------------------------------AATGGAAGAAAAGGACTA-TTTAAAAAAAAATCATTGATTTTATTACTGAAGTGTACAGAAACCCAAAAGGACAAGCCGGTGTGGAGCAAACCCCCTGGTTTCCCGATGGGGTGTCGCAGCTGCTGAGCAGGATTCCAGACT--GGAGACTGGCGGCGCCCGTTGAAA---------------CTTGACTG--GCGGTTCTGCGGCTTCACAGCCTCACATGTTGCTTTGAATAACAGAACATTCCTTTTAATATACCAATTTCGC s canFam1.chr16 22853627 1294 + 60307850 CGGCTCCGTGGGCCGGT--------GCCTCCAGGAGG--GCTCAGGGAGCTG--GACCCCGGGGCCGCGCCGCTG--------------------GCTCGTCTCCGTGACCGTGCGGG------TGACTCCCGGGATGTCACCTCCTCCGCCGTCGCCGCCTGTGAGAGGCTGGTCGCAGCTTCGGGAAGGCTGCCTTGAATGGCTTCGAAGACC-CAGCCTG--CTCCGCCGCATTACCGATTTCTGCTGCCTGTGCAGCAAAGATGCTGTTGGCGGGGACTTTGAGCCCAGCACCCCGGCTCCGGGCAGTGCAGAGT-----GGGGCAGCACCCTTCCAAGAGGGGACCGTCCTCCCAGCCACCTGCTGCCTC-TCGCAAGCC--ACCTCCTTTGGGCCCAGCCTGAGAA--CCAGG---------AGGTCAGGCACTGC--------------------CCCGTTAAGCCCCGGCaagtaagtgctgtaagtatttctgtttcagtgacaaggactctgagaggagagtaagaaacagagatattaggtggcagagcctgatacggagtcccaggcacctcacttcagggactctgtgttTA----CCTCACACTCCTCCTTCTTTTCA----GAGG---TCTCCTCACTGGGATTCAGAAAGGCAGGAGCTGGGGTGGAACCCAGAGCCGGCTGAGCCTCTGCCCTC-CGCCGACCGG--TGAAGCTGTGAGCTGGGGAGGAGAGGGGGGCAGCTGGGGAGGAGCCGGTCCTGCGGTCCCTGCGACCATCCGGCTCATCAGCCACTTTTGGTTAAATGTGGAGCAGACTGTGCAGCGAACGGCAGGGAAGGCTGAGCCTGG---------------GCTCTGGTTCTA-----------GGTGCAAGAGATTCCCTTGACCCCACA--TTCAAGTCCTTGCCTGGTCATCAGAGAAGACAAACCCAATATCCAGAGACCATCATTATACTT-TAGAAAACATGTCATTTGTTCATCTGGAGACGAGGCCCAGTGCAGC--CTGCTACAAATACCAGAAGCCTGTTttctttccttcttcctttcctttctttccttctttccttctttccttctttccttctttccttccttccttccttccttccttccttccttcctttctctctttctttcttGAAGAAAAGGACTATTTTTAAAAAGAACTGTTGATTTCAT-------------AGACACTCAATTGGATGAACCAGCCTGTAGTAAACCACTTAATTTCAGGAAAGGGAATCAGAGTAAATGA--AGGAT---AGATTTAGGAGATTAAAGAAGACCACTAAGAACAGGTCAATATGATCTTTATTAATGCAGTTTTGCTGCTTCACATTCTC----TTCCCTTTGAATAA-AAAGTATTTCTTTCAATATTTCCATTTCCT a score=195029.0 s hg17.chr7_random 21216 2086 + 778964 TTCAGTTCTGTTTATGAAATGCTCCTTTGAAAATACTAGTTTAATGCAATCTAGGAATTTAATTCCTAAGAAAATGGAAAAATGAAGTGCTCTGAGTCACCAGCCAGAGATCACAGTGCTGTGCTCTGGGGCGTTGCTGTGGGTGGTGGCTTGGGGACCCTCGGGAAGCTGTGCTTGGTGTCCCTCTAAGAGGCTTCCCAGAGCCGCACCTCTTGGTGCAGGAACAGGCCTCTTGCCGGTGACATAGACTCTTCCTGACGTCTCCACTAAATTGCTCATTTTTGTCAACATCCAACCTAGACACTGCTCACACCAAGTAAGAACGGCTCACTCCCCACAGTGACTCCTCGGGAGGCGTTTCCCACCGTGGGATTCTTCCCCATCTTTCTTGGCAGGCCCGTCTCTCCTTAGCGATACCACAAATCACCCCTTCCACGACCAAACCCACCCAAATGAATCGCTTCTGTTCCCTTCCCCACCCGCTGAACACTTGTAACATTGTAACAGTGAAGTGACCCATGTAACGGGGGGTTTCAGTGGAAGAAGAAATGTCGTGGGAAATTTCACAAAACCAGTGAAATTGTTAtttcatttattttatttatttattttttgagacaaagcctcactctgttgcccgggctgaagtgcaatggcacggtctcggctcactgcaacctctgcctcccaagttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcatgcgccaccacgctcggctaatttttgtatttttagtagagatgggtctcaccatgttggccaggctgttatcgaactcctgacctcaggtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcccagccTGTTATTTATTTTTGAAGTTGAAGTTCATGAACTGatttttatttttaaattattttattagctttatttttaaattGTCTGCTAATTCATCCTTAAAAATCAATTCCGTAAGTTTTTCACTTATTAAAAGTGAGGCTGTCGTGGGCCCTCCACCCAATTCACTTGGGACCCTCACTGGGGAGGCGAGTGAGAAGCCTGGCCTGAGCCTGCCATGCTGAGGGGCTGAGCAGAGACGTGAACCCCTGGCCAGGCGTGTGTGTGCCTGAGCCGTGTGGCGTCcagcctggggctggccacggcgacatgaatggccccacgtgggaactgcccagctgaacccttcccaagtttctgacacacaacattttgtgtataggcaaaataaaattcatgtttgaagccgctaaatcctggagtgtttgttccacagcagcagcagctgaAGCAGGTCCCGGATGATGTCAAACATCTTGCAGCTGTGCAGAGGGCACCATCCATCCTGCACCTTTCTCAGCTGACTCTCAGGCCGGAAAGCGTCCCGATGAAATGGGGTCCTAAGGTGACGCCAGCCCTGGCCACAGTCACAAATGCTGAGAGCCTCTAGGTGAACTCGGGTCACAAAGTCTAACACCTTCCTTGCAGGTTTCATGTTAGCCTGTTTCCAGATGCAGCCTGGGAACAGTAAGTGTGGGTGCACCTGTTCTAGGTGTGCCACTGTGTCTGGGTGTGAATGCTTTTAGCCCCCACGGGAGGCGAATGCCACTTTTTCTTCACTTCGAGATGCAGAG--TCACGAGTGCAGGAATGAGGTGAAGCAAAGCTGTGCGGCTCCGTGGGGCAGGACTTGCCCCAGCCCGTCTGGTCCAGCAGCCGCACTCTCAGCTGGACCCTTAGACGGGAAATCTTAGCGACTTTTCTAGGGTGAAGCTTGATGGCGTTGTGATGGGGCGTTCTCGATGCTGCTTTCTTAGCCTAGAAAAGCACAGAGTGGGCGCCCTCCCTGCTCCGTGGTGCGCgtgttgattgtctactgctgtataacaaactctcacaaacgttagtggcttcaaacacctgtttgattttgcacacgattccatggacaagggatccTCTGATCCTCCGGGTTCTGGCACTGCTGAGGCTGAAGGACCCACCTCCCACCGGGTGCTGGTGCGGCTGAGGCCGAGGG s panTro1.chr6 161385599 2087 + 161576975 TTCAGTTCTGTTTATGAAATGCTCCTTTGAAAATACTAGTTTAATGCAATCTAGGAATTTAATTCCTAAGAAAATGGAAAAATGAAGTGCTCTGAGTCACCAGCCAGAGATCACAGTGCTGTGCTCCGGGGCGTTGCTGTGGGCGGCGGCTTGGGGACCCTCGGGAAGCTGTGCTTGGTGCCCCTCTAAGAGGCTTCCCAGAGCCGCACCTCTTGGTGCAGGAACAGGCCTCTTGCCGGTGACATAGACTCTTCCTGACGTCTCCACTAAATTGCTCATTTTTGTCAACATCCAACCTAGACACCGCTCACACCAAGTAAGAACGGCTCACTCCCCACAGTGACTCCTCGGGAGGCGTTTCCCACCGTGGGATTCTTCCCCATCTTTCTTGGCAGGCCCGTCTCTCCTTAGCGATACCACAAATCACCCCTTCCACGACCAAACCCACCCAAATGAATTGCTTCTGTTCCCTTCCCCACCCGCTAAACACTTGTAACATTGTAACAGTGAAGTGACCCATGTAACGGGGG-TTTCAGTGGAAGAAGAAATGTCGTGGGAAATTTCACAAAACCAGTGAAATTGTTATTTCAtttattttatttatttattttttgagacaaagcctcactctgttgcccgggctgaagtgcaatggcacgatctcggctcactgcaacctctgcctcccaagttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcatgcgccaccacgctcggctaatttttgtatttttagtagagatgggtttcaccatgttggccaggctgttatcgaactcctgacctcaggtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgtggccagccTGTTATTTATTTTTGAAGTTGAAGTTCATGAACTGatttttatttttaaattattttattagctttatttttaaattGTCTGCTAATTCATCCTTAAAAATCAATTCCGTAAGTTTTTCACTTATTAAAAGTGAGGCTGTCGTGGGCCCTCCACCCAATTCACTTGGGACCCTCACTGGGGAGGTGAGTGAGAAGCCTGGCCTGAGCCTGCCATGCTGAGGGGCTGAGCAGAGACGTGAACCCCTGGCCAGGCGTGTGTGTGCCTGAGCCGTGTGGCGTCcagcctggggctggccacggcgacatgaatggccccacgtgggaactgcccagctgaacccttcccaagtttctgacacacaacattttgtgtataggcaaaataaaattcatgtttgaagccgctaaatcctggagtgtttgttccacagcagcagtagctgaagcaGGTCCCGGATGATGTCAAACATCTTGCAGCTGTGCGGAGGGCACCATCCATCCTGCACCTTTCTCAGCTGACTCTCAGGCCGGAAAGCGTCCCGATGAAATGGGGTCCTGAGGTGACGCCAGCCCTGGCCACAGTCACAAATGCTGAGAGCCTCCAGGTGAACTCGGGTCACAAAGACTAACATCTTCCTTGCAGGTTTCATGTTAGCCTGTTTCCAGATGCAGCCTGGGAACAGTAAGGGTGGGTGCACCTGTTCTAGGTGTGCCACTGTGTCTGGGTGTGAATGCTTTTAGCCCCCACAGGAGGCGAATGCCACTTTTTCTTCACTTCGAGATGCAGAGAGTCACGAGTGCAGGAATGAGGTGAAGCAAAGCTGTGCGGCTCCGTGGGGCAGGACTCGCCCCAGCCCGTCTGGTCCAGCAGCCGCACTCTCAGCCGGACCCTTAGACGGGAAATCTTAGCGACTTTTCTAGGGTGAAGCTTGATGGTGTTGTGATGGGGCGTTCTCGATGCTGCTTTCTTAGCCTAGAAAAGCACAGAGTGGGCGCCCTCCCTGCTCCGTGGTGCGCGGGttgattgtctactgctgtataacaaactctcacaaacgttagtggcttcaaacacgtgtttgattttgcacacgattccatggacaagggatccTCTGATCCTCCGGGTTCTGGCACTGCTGAGGCTGAAGGACCCACCTCCCACCGGGTGCTGGTGCGGCTGAGGCCGAGGG a score=22398.0 s hg17.chr7_random 23302 164 + 778964 ACCCCTCTTACCGGGTGCTGGCACAGCTGAGGCTGAAGGACCCACCTCTCATTTGGCTTTTCTGAGCGTGCCTGGCCTCTCTCTGTCTCTCCACGTGGGCTCTCTGTGTGGCTGGGGCT---------GCCCACGTGTGTGGAGTCAGCGTGGTGCTT---CTCACATGGAGTGGC s panTro1.chr6 161387686 164 + 161576975 ACCCCTCTCACCGGGTGCTGGCACAGCTGAGGCTGAAGGACCCACCTCTCATTTGGCTTTTCTGAGCATGTCTGGCCTCTCTCTGTCTCTCCACGTGGGCTCTCTGTGTGGCTGGGGCT---------GCCCACGTGTGTGGAGTCAGCGTGGTGCTT---CTCACATGGAGTGGC s mm5.chr17 45904573 175 + 93559791 ACCCCATTTCCTGGATGCTGGGAAGTAAGTGGGAGGGGGACCCACCCCTTGCCTGGCTGCCCTTTGAGGGTCTGGCTTCTGGCCCTGATCCCTCCTGGGCACTGTTTATGGCTGTAATTGCTTCGTTAGCCAGGGTTTATAGAGTTA-CTTAGCACCTGCCCCCACAGGGAGTGGC a score=78686.0 s hg17.chr7_random 23466 832 + 778964 TTCCCGAAGGCAGGTGACATCGGCCGCAGGCCAGGTCAGGGCTATGCCTGTAGCCAGCAGCTTCAAGCCTCCGACCCTCAGTCTGAACCGCaagtcctgcccaggttaaggggtgaagaaacaagagcctctccggagggagtggccagagaagactgcagaggagaatgtggggtgggagatgctggaaaatgccatctgccacaGCAGGTGGGGTGGGCGGGCGAGAGAAAGAGAGGATGTGGCAGCTCCGTTTCCTGGGAGGTTTCACCCCCACTCTGGGAGGAAGACTCTTCAGCTCCACCTGGCCAGGAACCTGTTCTCACTTCTCCTTCCTTTTCAATGGAGATAACGTCTGTTATGCCTGACTCTAAAACCAAATGTGCTTGGTGCTGGGTTGGAGAGCAGAGTGCTGTGGAAATGTCCATTGATGTTGTTTTCTGAAAAGCCATTGGGCAGCATGAGAACAGAAGATGACACACTGCCCTTTTGCCCCTGGAGACCCAGTTCCATCTGGAAAGACAGCACTATAAACATGAGCTGTGGACTTTTGAAAATTGGAGACACTGCATGCAGAAAGTTCCAGGACCTCACCAAGCTGCATAGCTAGCAAGCAGCAGAGCAAGAGAGAGGCCAACATGGTACATTCTCAACCAGCCCAGCCCATCCTGTGCCATTTTTACCAAACCCTCACCCATTGGAACTCAGCGATCCGATTAGGACCATTATGGTGTCAGCTTCTTTCCAGGATGACATTGAGTAAGGAAATTCATTTTTAAAACTTTTAGCTGTTAAAAATGTAAACCAAGGCCCAAATTTTTACTTTAACAGG s panTro1.chr6 161387850 832 + 161576975 TTCCCGAAGGCAGGTGACATCGGCCGCAGGCCAGGTCAGGGCTATGCCTGTAGCCAGCAGCTTCAAGCCTCCGACCCTCAGTCTGAACCGCaagtcctgcccaggttaaggggtgaagaaacaagagcctctccggagggagtggccagagaagactgcagaggagaatgtggggtgggagatgctggaaaatgccatctgccacaGCAGGTGGGGTGGGCGGGCGAGAGAAAGAGAGGATGTGGCAGCTCCGTTTCCTGGGAGGTTTCACCCCCACTCTGGGAGGAAGACCCTTCAGCTCCACCTGGCCAGGAACCTGTTCTCACTTCTCCTTCCTTTTCAATGGAGATAACGTCTGTTATGCCTGACTCTAAAACCAAATGTGCTTGGTGCTGGGTTGGAGAGCAGAGTGCTGTGGAAATGTCCGTTGATGTTGTTTTCTGAAAAGCCGTTGGGCAGCATGAGAACAGAAGATGACACACTGCCCTTTTGCCCCTGGAGACCCAGTTCCATCTGGAAAGACAGCACTATAAACATGAGCTGTGGACTTTTGAAACTTGGAGACACTGCATGCAGAAAGTTCCAGGACCTCGCCAAGCTGCATAGCTAGCAAGCAGCAGAGCAAGAGAGAGGCCAACATGGTACATTCTCAACCAGCCCAGCCCATCCTGTGCCATTTTTACCAAACCCTCACCCATTGGAACTCAGCGATCCGATTAGGACCATTATGGTGTCAGCTTCTTTCCAGGATGACATTGAGTAAGGAAATTCACTTTTAAAACTTTTAGCTGTTAAAAATGTAAACCAAGGCCCAAATTTTTACTTTAACAGG a score=59745.0 s hg17.chr7_random 24298 520 + 778964 TCTCAGCAAGCTGAGAGGGTGACCCAACAGTGCAGCGCTGCTCTCAGCTGCCACGACCCGCACAGTCGCTGGGAGGGAGGGTCCTGTGGAGGACGCATTGTCCACGGTTGCACTGCAAGGTGAGGTCTCA--AAGCCATTGTTGTCCAAGGTTGCCTGGGCATTGAAGGCCTGGGGAGCAGG---ATGTGGTTTCTCCACGTTGTCTGATCCTGAGGGCAAGCATTTGATGTGTGAGTGGCTGCTGGAAAGCACTGGAATTCCCTAAGCAGATACAACACACT---GGGGAGACAATG-GCCATGAAGGT----------------GAAAAAGTAATAGCCAAGGACCGAAAAGCTCCCTGGAGCAGAGACCCCGAGGAGCCGAGACTTAACCAGCTAAATCCATCAGTGGAGGAGGCAGCACCTGTAGATGGGAGACTTGTATTTGTTTCCTAAG-----------TGCCTTTAGATTTTGGGTAATG--------------------ATTTCTAATTTATTAACATAAAAACAATGTTTTGTTAGATCAATAAGAGCACAAACTCCTCCTTACT s panTro1.chr6 161388682 520 + 161576975 TCTCAGCAAGCTGAGAGGGTGACCCAACAGTGCAGTGCTGCTCTCAGCTGCCACGACCCGCACAGTCGCTGGGAGGGAGGGTCCTGTGGAGGACGCATTGTCTGCGGTTGCACTGCAAGGTGAGGTCTCA--AAGCCATTGTTGTCCAAGGTTGCCTGGGCATTGAAGGCCTGGGGAGCAGG---ATGTGGTTTCTCCACGTTGTCTGATCCTGAGGGCAAGCATTTGATGTGTGAGTGGCTGCTGGAAAGCCCTGGAATTCCCTAAGCAGATACAACACACT---GGGGAGAAAATG-GCCATGAAGGT----------------AAAAAAGTAATAGCCAAGGACCGAAAAGCTCCCTGGAGCAGAGACCCCGAGGAGCCGAGACTTAACCAGTTAAATCCATCAGTGGAGGAGGCAGCACCTGTAGATGGGAGACTTGTATTTGTTTCCTAAG-----------TGCCTTTAGATTTTGGGTAACG--------------------ATTTCTAATTTATTAACATAAAAAAAAAGTTTTTTTAGATCAATAAGAGCACAAACTCCTCCTTACT s canFam1.chr13 9995876 523 + 66159989 TCTCTGCAAGCTGAGAGCTTGACCAGCTAATACAGCATTCCTCTTAGATACTACTGCTGTTGTAGCCAGCCCGAGAAA---TCCCATATTTGC--TATTTTCACTAGTTGAGT--CAGGATGGAGTGTCATGTAGTCAGTGTCACCAACAGTTGCGTTGTCATCATAGACCTAAGAGGTCAGATCATTGAGTTTTTGCAC-CTGTCCAATCCTAATAGATATCATTTGATGTGTGAGTGTCTGCTGAAAAGCATAGG------------GGATATAATGCACCAGAGGGGATATAATGCACCAGAAATGTTAATATGATCACTAGAAGAAGAAGAACCGCCAAGAACTGAAAAATTTCCT---------------AGGAATCAATATTTAACCAATTAAGTAAATCAG-------------ATGTGTTATAATAAGACTCAGGTT--TTACCTAAGTCAAATTATCTTCTTTTTTTCTTTTGGATAACGTGTAATTGGGTTTCCACTTTTTTTCTGAATTATTTGCCTAGGTATAACATGATGT---ATTAGCAATCACATATCCTCATAATTACT a score=-4603.0 s hg17.chr7_random 24818 88 + 778964 AACCTGTTGAGGTGTC-AAGAATGT---------------------------------------------------------GTACTTTGGAG-------------------------------------------------TACCATTGAGGC--TAAATT------------------------------GTTCATT--------------------------------------------------------------------------------TCAGATTGTATTGCTTGAAGGGAATT-------------CA------------------- s panTro1.chr6 161389202 88 + 161576975 AACCTGTTGAGGTGTC-AAGAATGT---------------------------------------------------------GTACTTTGGAG-------------------------------------------------TACCATTGAGGC--TAAATT------------------------------GTTCATT--------------------------------------------------------------------------------TCAGATTGTATTGCTTGAAGGGAATT-------------CA------------------- s canFam1.chr27 20008785 339 + 49087461 AAGCGGTTAGGGTATCTAAGGCTGTGCAATTGTCTACTATAACTCTGGCTAGAGAGTTTCTAGATTTTTGTTGTAATTGTAGGTATTTTGCAGAAGAGATCTTTCCTAAAAAGATTTAAAAGCGATCTTTTGTTGGTGTCTTTTCCATTAAGTCTTTAAGTTTTAATGTCTTCTTTGGAATGATCACAGAAAGTTTATTAGACCTGGTGGAAAATAATTTTTAATATTGCGTTAGTGCCTTACATTATTGGATCATGTTACGATTACTTAGGATGAACGTGAGAAtgtcttatttcaggagtgttacatatgagcttccacctaagttgggcctctata a score=42889.0 s hg17.chr7_random 24906 291 + 778964 aggtattgttttatgaaaacaagaaaagcgaaggttaacat----------------------------ttggag--caaattatgatcttagtggctgagtccagagggcag-ctgtcaagaagatttccagatatgagtttgaagcttcttgagatggtggaatgtggacagcaggtgagatccaatggacctctctggtttgcagccggcatgtccctggtgatgtcatcggctgttctggtgaac---cctgagtga-ccgcgtggcagcggccatgaacactgtccatccgtggtctgccgcag-ggattcttctaagttta s panTro1.chr6 161389290 291 + 161576975 aggtattgttttatgaaaacaagaaaagcgaaggttaacat----------------------------ttggag--caaattatgatcttagtggctgagtccagagggcag-ctgtcaagaagatttccagatatgagtttgaagcttcttgagatggtggaatgtggacagcaggtgagatccaatggacctctctggtttgcagtcggcatgtccctggtgatgtcatcggctgttctggtgaac---cctgagtga-ccgcgtggcagtggccatgaacactgtccatccgtggtctgccgcag-ggattcttctaagttta s canFam1.chr13 9996508 323 + 66159989 aggcat--ttctatggaaacaagaaaaacaaaggttaatTTTAAACAAGGGTcaaaaggttaacaaaggttaaagttcaaacactaagctcagtttctgggcttggagagcagtcagttgagaaaatttctagatttgagttggaagcatcttcagatgttagaagaaagatggcattttcagtctgatagattttcct-gtttgcagtttgactgtctttgaaggtaaatttgg-tattctggtgaactctcttgagtggcccatacagtaacagacatgaaggttgtccatatatgatatgttgtggtggtttctctcaagttta a score=2856.0 s hg17.chr7_random 25197 30 + 778964 aagtcatccagattcagtttgcagggcttg s panTro1.chr6 161389581 30 + 161576975 aagtcatccagattcagtttgcagggcttg a score=52973.0 s hg17.chr7_random 25227 383 + 778964 ggagaaaaagat---------aAGTATTCCACtttttttttctttctttttttttttttttttttttgcaaaagcttattttatcaaatggctgcaagttatagacagctt---aatagaaaaaaaaagggttctttaaatctgaaaaataagatattaaggagccagtaatgtttcaaacaaa------------------------aagtcataaaagttacaattattctaat-agttaattcagtaccatataattaatggtactgaattttgttttgttcagtctttgcttagcggttttatgaatccatcagtttttcgttacagttctggaaatcctt---------aatagtatgatcttaaagttatcagaca---------caagtacttgttacagtttttctcatgaatctct-------tgcaattttgtat s panTro1.chr6 161389611 388 + 161576975 ggagaaaaagataagtattccaagtattccaCTTTTTTTTTCTTTC--TTTCTttctttttttttttgcaaaagcttattttatcaaatggctgcaagttatagacagctt---aatag-aaaaaaaagggttctttaaatctgaaaaataagacattaaggagccagtaatgtttcaaacaaa------------------------aagtcataaaagttataattattctaat-agttaattcagtaccatataattaatggtactgaattttgttttgttcagtctttgcttagcggttttatgaatccatcagtttttcattacagttc-ggaaatcctt---------aatagtatgatcttaaagttatcagaca---------caagtacttgttacagtttttctcacgaatctct-------tgcaattttgtat s canFam1.chr13 9997288 394 + 66159989 gaagaaaaagat---------aaatgtttcaacttctgtttac---------------------------aaagtatattttaacaaattgctgtaagttatagaaagctttaaaagag-gagaaatgaggtcctttaaatctggaaaagaaaacattaaagaaccagcaatgataaaaaaaaaaaagaaccagcaatgttttaaatgaagtaataaatattataattcttctcatcagttcattcagtcttctgtaat-------------tcttcttttgcttcatcttgggttagcagctttatgagtcaattggtttcatttagaatttc-agaaattcttatctaattcagtgtaatgatcttaaagttatcagagatctatattctaaatacttgtcaggatcctttccattaatcttgaagatgaagcatttttatat a score=151117.0 s hg17.chr7_random 25610 1054 + 778964 caa----gcaactgacaagaaatttggttgatttggtgacatgccacattttaagaacatagttagag-tatgactgatgatgttataccagaacatatcagatttttagaaatttcatgtaatttttaagcacttctatgactaatacatatccatgtatgtgtaacctaag-----------attctgtatttgacagtgcttctcatgcaatttaacatattcaataagc-tcattagtttagcatctctctttttataaggagagaaaat-gttcttttgatgtattccccagggtccctcctgaaaactaccaaagttaatttgaggtgaaaaagacttaatatagaatttgattttggg-atgccgttaaaaatgtcaaatggcttaaaacactt--------aagaccacaggccactgcggaacaaggccaa-----------agtgac----agaagattttaaaggcaaatacagaaagc---agcttagttgccaaaaaaa----aaatcttagcttttttagtattgaaaaga--ctattttcttaagtaatcaaagacctgataaaagacaacatgaagcataagaaattaatctgataaaacacaaaatcattgttttttaggccaattgcttaaaaggcaa--aaaaacctttcataa-----tcaagagcagaccaactccaagaaaactttgtccttttaacaaagagaaagcaaaattcca-----------acacagcg-tcagcacttcttaaactgttttttaaa--ccttataa-----gtaaaattattctaatcttagtttgaccacatataaattttttttctcagactttctacaattttctatatgcattaaatttttgtcttactcattttcttctttattctggaacaatcagttatcttgctttaggacaaaatctctttttttccttaa-acacagatctcgtatatttttt--------ctcat-taaaagcacattctactttctttgtacatttttcatactccattgttt-gcttcagtctttatttttctagtggttttaatgacacatgttaattcaaattcttaattcttagtgg-cattaatATTCACTGTGAATTAGGAAGCA s panTro1.chr6 161389999 1054 + 161576975 caa----gcaactgacaagaaatttggttgatttggtgacatgccacattttaagaac----ctagag-tatgactgatgatgttataccagaacatatcagatttttagaaatttcatgtaatttttaagcacttctatgactaatacatatccatgtatgtgtaacctaag-----------attctgtatttgacagtgcttctcatgcaatttaacatattcagtaagc-tcattagtttagcatctctctttttataaggagagaaaat-gttcttttgatgtattccccagggtccctcctgaaaactaccaaagttaatttgaggtgaaaaagacttaatatagaatttgattttggg-atgccgttaaaaatgtcaaatggcttaaaacactt--------aagaccacaggccactgcggaacaaggccaa-----------agtgac----agaagattttaaaggcaaatacagaaagc---agcttagttgccaaaaaaaagagaaatcttagcttttttagtattgaaaaga--ctattttcttaagtaatcaaagacctgataaaagacaacatgaagcataagaaattaatctgataaaacacaaaatcattgttttttaggccaattgcttaaaaggcaa--aaaaacctttcataa-----tcaagagcagaccaactccaagaaaacgttgtcctttcaacaaagagaaagcaaaattcca-----------acgcagcg-tcagcacttcttaaactattttttaaa--ccttataa-----gtaaaattattctaatcttagtttgaccacacataaattttttttctcagactttctacaattttctatatgcattaaatttttgtcttactcgttttcttctttattctggaacaatcagttatcttgctttaggacaaaatctctttttttccttaa-acacagatctcgtatatttttt--------ctcat-taaaagcacattctactttctttgtacatttttcatactccattgttt-gcttcagtctttatttttctagtggttttaatgacacatgttaattcaaattcttaattcttagtgg-cattaatattcactgtgaattaggaagca s canFam1.chr13 9997830 1102 + 66159989 caatgatgcaattgatagtaaatttggttg-ttttgtgttctacagtatttcaaaataataactggaattatgactggtaatattacatcaggac--attgaaagttgaagaatttcacataatttttaaa---ttatattagtaatatgtactcatctaaatataatctaagggttaaacattactttttatttgacaatgtttcccatgcaattcaatgtatctactaagtgtaaataaatca--atctcta-ttttataaggagagaaagcaaatcttttga--gattttccagagcccctctggaaaggtct---agttagtttgaggtcaaggagatgtcatccagaacttgatttggggaaggttgtgaaaaatttcaaaagattgaagacctttgatcaaacagaagcataagtcactgtaaaacaagacttagttatccaatcagtgacaataaaaagatctcataggcaagtacagaaacctttcacatagttgt----aaaa----aaatcttaactcatttagtattaaaaagattccatttttctaagtaatcaaagacccgat-aaagacaatgtggagcacaggaaat--attttctaaggcacagaatctttgtttcctggacaggttaccttaaaaataaagaaaaactttctctaaatttctagtgagtagaccaataatgtaaaaactgcatggcttt----aaaagaaaattaaattctagttttgtatttgcacattattcagttcattttaaaatgagcttgaaaacccttataaaatctgttcaatttaaccagctttgaactcacaacata-aatttcttttccacaaac---ctgcaactttctgtattcgtttaggatttgtctta----ttttccttcttattttagaataaggagacattttattttagaactta--ctctctttttccttaacaaaaatacctcttctcttccttgaatactcttcatatagaaacacatcttgttttcttaccatattttgcatataaagttgtttcccttcactcattg--tttctagtagttctatttttacatgttgatcataaattttaaatatttgtaatctttactttccagtgaaaactaggaaaca a score=3625.0 s hg17.chr7_random 26664 178 + 778964 CATGATGTCGTCGTTCTTAGCTGGCGTGTGCTCACTGAATTAGGAGGCACACGATGTCGTTCTTAGCTGGCGTGTGCTCACTGAATTAGGAGGCACACGATGTCGTCGTTCTTAGCTGGCGTGTGCTCACTGAATTAGGAGGCACACGATGTCGTCGTTCTTAGCTGGCGTGTGCTCC s panTro1.chr6 161391053 83 + 161576975 cacgatgtcgtcgttattagctggcgcgtgctcactgaattaggaggcacacga----------------------------------------------tgtcgtcgttgttagctggcgtg-------------------------------------------------tgctcc a score=2461.0 s hg17.chr7_random 26794 42 + 778964 TGAATTAGGAGGCACACGATGTCGTCGTTCTTAGCTGGCGTG s panTro1.chr6 215394 42 - 161576975 tgaattaggaagtacatgatatcatagttattaaatggcatg a score=11650.0 s hg17.chr7_random 26842 93 + 778964 CTCAgcacaggacacgcctaccggcagacccaggtagctccagttcctct--ataagcagccaaaaataattcagctttaatttattttatgaaa s panTro1.chr6 161391136 93 + 161576975 ctcagcacaggacacgcttaccggcagacccaggtagctccagttcctct--ataagcagccaaagataattcagctttaatttattttatgaaa s canFam1.chr18 26171245 89 - 66173745 tgtggcacaagatatgtttgctaataattccaaatgtctttagttccttttaataaatagccttaagtagata------aatctatgttcagtaa a score=1361.0 s hg17.chr7_random 26935 16 + 778964 cattgaacttaatgtt s panTro1.chr6 161391229 16 + 161576975 cattaaacttaatgtt a score=29289.0 s hg17.chr7_random 26951 255 + 778964 ttagtagtttatcgtatccaggcatgatctagatatttaataactattgtttaagttagtacaattttagagtttcaagttttcaaaagtattttggaaactgtttgtaggcagacataACTCCTTGTCATCTCAGGATATTTTTCTTGTTGACAAATTTTGTAACAGAAATTTTGTAAGCTTATTTGACTATTACAGCTAGGTAGA----------------------------------------------ATATCCGTTTCTACTAAATCATCAATAT---------TCTCATTTATTAAAAATGAC s panTro1.chr6 161391245 255 + 161576975 ttagtagtttatcgtatccaggcatgatctagatatttaataactattgtttaagttagtataattttagagtttcaagttttcaaaagtattttggaaactgtttgtaggcagacataactccttgtcatctcaggatatttttcttgttgacaaattttgtaacaGAAATTTTGTAAGCTTATTTGACTGTTACAGCTAGGTAGA----------------------------------------------atatccgtttctactaaatcatcgatat---------tctcatttattaaaaaggac s canFam1.chr13 9999218 269 + 66159989 TTATCTGTTTTTAACAATTATGCTTAGATTAGACATCAAATAGCTA-----------ACCATGAttttttttttttttttttt------ttttttGCTAAC------------------------TATCATCTTAAGTTCTTTTTCTGGCTGATAAATTTTGAAACAGAGACAGCATGAGCTTATTTGactagtaaacccaggtagaaaagttgcatgtttgcactatatttaatgttgacaactcagaagtcatgtctgcttttattaaatcaacagacttaaactaggttttatttattggcaattat a score=27985.0 s hg17.chr7_random 27206 301 + 778964 TCActgggcgtggtggctcacgcctgtaatcccagcactttggaaggccaaaggattgcttggggccaggaatttcagatcagcctggccaacgtagtgagacccctgtctctacaaaaaattaaaaaattagctgggtgtggtggtgcatgcctgcagtcctggctacttgggaggctgaagtgggaagactgtttgagcccagaagattgagattgcagtaagctatgatcacgtcactgcacttcagcctggcaacagagcaagactctcttaaaaaagaaacaaaacaaaaagatta s panTro1.chr6 161391500 301 + 161576975 tcactgggcgtggtggctcacgcctgtaatcccagcactttggaaggccaaaggattgcttggggccaggaatttcggatcagcctggccaacatagtgagacccctgtctctacaaaaaatttaaaaattagctgggtgtggtggtgcatgcctgcagtcctggctacttgggaggctgaagtgggaagactgtttgagcccagaagactgagattgcagtaagctatgatcacgtcaccgcacttcagcctggcaacagagcaagactctcttaaaaaagaaacaaaacaaaaagatta a score=20253.0 s hg17.chr7_random 27507 156 + 778964 ctcaagttatgtgaccttgaaaatgatttgggttcattt----------gttttctgagaaaatttgtataagcacttacttttctttaggccagtaaaatagagctcttttaatattatttctaataataccatccagaggtagactgatataacatataaataa s panTro1.chr6 161391801 156 + 161576975 ctcaagttatgtgaccttgaaaatgatttgggttcattt----------gttttccgagaaaatttgtataagcacttacttttctttaggccagtaaaatagagctcttttaatattatttctaagaatcccattccgagggagaatgatataacatataaataa s canFam1.chr13 9999487 130 + 66159989 cccagatcatgtgaccttgaaaatcatttgggtctgtttctatatttgagcattttaggaatactgacataagtgattattttcctttaagccaa---------------ttaatagaattttaaaaa---------------------atattacaTATATATGA a score=23192.0 s hg17.chr7_random 27663 178 + 778964 catacatacatatagacgtacataaccaaacagat----gcagaggt-tcctggcttctgttctcaaattgtagccctgtgccaggaacgataa-tataaaactc------actggtcggtccaaattgtgttcttggcagat----------aaagttacctgttcggatggccaaagtcttttgttaatacatatgga s panTro1.chr6 215974 182 - 161576975 catacatacatatagacgtacataaccaaacagacagaagcagagat-tcctggcctctgttctcaaattgtagccctgtgccaggaacaataa-tataaaactc------actggtcggtccaaattgtgttcttggcagat----------aaagttacctgttcggatggccaaagtcttttgttaatacatatgga s canFam1.chr13 9999617 176 + 66159989 ----tagacatatgg--------------acagac----acagaggtcttgtagctctcatttttaaattttagctatgcctcaggtacaataattgtaaaactcagcaaaatagctggatttaaat--tgtttctggcagatggactctgtcaaggttacctgctcagaaggccaacattctttttaaCTGAAGATTGA a score=5633.0 s hg17.chr7_random 27841 38 + 778964 -aaggactttacgattttccatttgccagtttttttcta s panTro1.chr6 216156 38 - 161576975 -aaggactttaagattttccatttgccagtttttttcta s canFam1.chr18 26172071 35 - 66173745 gaagattttttaaatgtttcatttgc----ttttttgta a score=36738.0 s hg17.chr7_random 27879 447 + 778964 cagtgttcccattttttctcccttctgatgcgtcatttcccagatgcctgcattttaaaGATTTCGGTATCTCTAAGGCAGGGAGAAAGGACATTAAGTTTTCTCCAGAAAGGAGCTGTGGGCATAGTTGCCTGTTGTCCGGGGTCAGCTTTATTGGGACCGTGGGCCGTGTTTAGGGGGTGGCCAGGAGACACTGGTGTGTTGACGAGTCCTTCTCCTCTTCAGCCTCAGGTGGCTGCTTTTGTAATAGCTCAGGGTTGTGTGCAAGAGGCCAAAATCTGAGTTAGTTGTTGCAGATGCCCCAGGCTCAGTGGAGGATTTAATTTGTAAGGAAGTTGGTTTTCAGAATCTTCTTATGGAAAAGGCAAGAAATCAAATGTTAGTAGACTCAAAATAGTGTTTTGTTCGAGTGCTGTAGAGATTCCTTTAGGGAGGCTGTATT-TTGGA s panTro1.chr6 216194 427 - 161576975 cagtgttcccattttttctcccttctgatgcgtcatttcccagatgcctgcattttaaaGATTTCGGTATCTCTAAGGCAGGGAGAAAGGACATTAAGTTTTCTCCAGAAAGGAGTTGTGGGCATAGTTGCCTGTTGTCCGGGGTCAGATTTATTGGGACCGTGGGCCGTGTTTAGGGGGTAGCCAGGAGACACTGGTGTGTTGACGAGTCCTTCTC---TTCAGCCTCAGGTGGCTGCTTTTGTAATAGCTCAGGGTTGTGTGCAAG--GCCAAAATCTGAGTTAGTTGTTGCAGATGCCCCAGGCTCAGTGGAGGATTTAATTTGTAAAGAATTTGGTTTTCAGAATCTTCATATGGAAAAGGCAAGAAATCAAA----------------ATAGCATTTTGTTTGAGTGCTGTAGAGATTCCTTTAGGGAGGCTGCATTTTTGGA a score=17185.0 s hg17.chr7_random 28330 205 + 778964 TTCTGTCTAAAATCAATCATCTGTATGCCAATCATTCTGTCTAAAATCAATCGGTATGCCAATCATTCTGTCTGAAATCAATCTGTATGCCAATCATTCTGTCTAAAATCAATCGGTATGCCAATCATTCTGTCTGAAATCAATCGGTATGCCAATCATTCTGTCTGAAATCAGTCTGTATGCCAATCATTCTGTCTGAAATCAG s panTro1.chr6 161392660 202 + 161576975 TTCTGTCTAAAATCAATCG---GTATGCCAATCATTCTGTCTAAAATCAATCAGTATGCCAATCATTCTGTCTAAAATCAATCGGTATGCCAATCATTCTGTCTAAAATCAATCGGTATGCCAATCATTCTGTCTGAAATCAATCTGTATGCCAATCATTCTGTCTCAAATCAATCGGTATGCCAATCATTCTGTCTGAAATCAG a score=22397.0 s hg17.chr7_random 28535 199 + 778964 TCTGTATGCCAATCAAAAAATATATTGCGTGGTTTGCAGATACTCACGATTCC-TTGTTCTTGAATGAGCCCGTCCGTGAATGATTTCATGTGGAATAAACTTCCCACT-------------GTGGCCACTGTGACTCGGAGTCATCCCCC-TGAGCTGCACCCATTTCTCCAGAAAGGCACGGGCTCTGGGTCTG-------------------------------TAGTTTCTGAACATGTAA s panTro1.chr6 161392862 198 + 161576975 TCTGTATGCCAATCAAAAAATATATTGCGTGGTTTGCGG-CACTCACGATTCC-TTGTTCTTGAATGTGCCCGTACGTGAATGATTTCATGTGGAATAAACTTCCCACT-------------GTGGCCACTGTGACTTGGAGTCATCCCCC-TGAGCTGCACCCATTTCTCCAGAAAGGCATGGGCTCTAGGTCTG-------------------------------TAGTTTCTGAACATATAA s canFam1.chr18 26172156 238 - 66173745 TCTGCATATCAATCAAAAACTGTAATCCATTGTTTTTGG-GACGTTTGGGCCCATTTTTCTCTAGGGTACCT---CATGGATGGATGTTTATG---TAGATCTCCCCCTTTGCCCTGTACTAGCGGCCACTGTAATTCAAAATTATCTTTAGTAAAGTTAACCCATTTGTTCAGACAAGCGTATGTTCTACGTCTGAAATTTTCATGCATATCTTTAGTTGGAGatttattttttaaatttttaa a score=12593.0 s hg17.chr7_random 28734 82 + 778964 TTAGCTGGAGTTCCAGATGGGGTGTCCCAGACTCCATGGATTCTGATGAACCCATAATTCCCTGTTTTTCTCACATTTTTCT s panTro1.chr6 161393060 82 + 161576975 TTAGCTGGATTTCCAGATGGGGTGTCCCAGACTCCGTGGATTCTGATGAACCCATAATTCCCTGTTTTTCTCACATTTTTCT s canFam1.chr18 26172510 75 - 66173745 TTAGCTGGAGTTTTAGTTGGGGTCTC----AGTCTTTGGACTTGGAGGAAGCC---ATtttctttttttcttccttttcttt a score=68928.0 s hg17.chr7_random 28816 549 + 778964 TACCTgaggcctccgactggatccaggccagttcctgtagaacacccagtttcactctggatcccagtccaggttccagtgcagtccctgtcagacccaggctgagctctg------gaataaaaactgctcccatggagtcggagagctcagggtgc--aagttgtggagctcgacctcctagagggttttcccctgtggcc----accaaatgcagcaagacagcagtgggtgca-gtggcccgggggctgcccacgcctggttactcgctgctcctggg--------------------gatCTCACTTCTGACG--AGA-Ctgtcaaaa--aggtaaactgaggcacagtgctgtgtttaaagagttcatttgagcaagcaacaattcatgaaccaggcagctccaaaccagaggtggttcag-gaactcccctgaaggaatgtgagggggagg---------------cttttatagacgacacagaagtaaagcaaagaa--tgttggcttggttaca-cttgcacagctgccttatttgttctgtcccattggaaagtccctcgttgatacgattatt-aaagtttgttggttacttctg s panTro1.chr6 161393142 552 + 161576975 TACCTgagtcctccgactggatccaggccagttcctgtagaacatccagtttcactctggatcccagtccaggttccagtgcagtccctgtcagacccaggctgagctctg------gaataaaaactgctcccatggagtcggagagctcagggtgc--aagttgtggagctcgacctcctagaggggcttcccctgtggcc----accaaatgcagcaagacagcagtgggtgca-gtggcccgggggctgcccacgcccagttactcgctgctcctggg--------------------gatCTCACTTCTGACAACAGA-Ctgtcgaaa--aggtaaactgaggcacagtgatgtgtttaaagagttcatttgaacaagcaacaattcatgaaccaggcagctccgaaccagaggtggttcag-gaactcccctgaaggaatgtgagggggagg---------------cttttatagacgacacagaagtaaagcaaagaa--tgttggcttggttaca-cttgcacagctgccttatttgttctatgccattgtaaagtccctcattgatacgattattaaaagtttgttggctacttctg s canFam1.chr17 29237820 558 - 66886099 TACCTGAGGCCTCACCCTGGGTTCAGTCCTGTTTCAGTAGGATG--------------------CAGTCTGGGAAGC--TGGAGAGCTCATCATGTTTAAGTTGGaccctgtctgttaaataaa---tgcttaaatgaagtcagagagctgataatgcaaaagctgagaagcttcatcttctgtgagggacttactcatgaccttcattcaggcccaggaagaaagcagtgagcacacaaggctcagcaggtgcctacacctagctgcttgctgctcccaaggcccatcggggtctcctttagattccacttctgacaccaGAGCtgttaaaggtaagtaaactgaggccca---ctacaatttacaagcttatttgagcctacattgatt--tgaaccgggtaatgccaaaccaaagatggttgagagcactccatccattggagctaggggagaggttttttatttttttatttttaaagaatatacagaagcaaggcaaggaacttatttgactgaccatagcttaagccgttgccttatttg------------ggaaag--cctagttg----gctcttt-gtgatttgttctttagttttg a score=151244.0 s hg17.chr7_random 29365 1760 + 778964 attatttATTCTGATATGATCCTTGATATGATAATAATTGATATTATTGATATCAATTATTGGTAGATTGATATAATTGATATGATATTCTGGTATGattactaaaagtttgttggctacttctgattgttctgataacttaagttctattcttttttaaaatgggaatttacaagaaatggctcaagttaagtgtcgcttatgtctgcaaatcaatcaaggttgaggtaatttatgagacctgactggttgtgtctgcccagagcttcttgatatctgtttccttttaaatttactttaaAATAGCCAGTCTAACAATATTACATGTGCTTCATGCATTTAACTTAAAAGATTGTTTTCTAAAGACTATCTTTGTTTATGGtataatattataaaatactattttattttgaattaaaaaCATCTGTTTTTCAGGTAATATCAAAAGAGGATACCAACGTGGCCTTTAAGAATATACACGTTTTCCATGTAATTATTTCtcattatttgttagggaagtgcattagacactcagtgcagaggctaaaattaaaaaggctgatcataccaagtcttggcaatgatatggagtaatagcactcacattgttgatcagggcatacatatgtgcaatccctttggaaaactgtttggcagtaggtactacgaactagacatatgtccactgatgacctaacgattcctctgctaggtacaaacccaagacaaatgtgtgtgtgtgtgtccaccagcatacacatccaagagcgtcgtagccaataagtacagacaacccagacatgcactgacggaacagtgggcagtggcctgtgctgtggtcacaccttggctccctctgtggcaggagaggacaggtgcacacagaacaacaacacgtcacagatgtgatgaagtggggggaagccagacacaggagtcctcaaagcaggagcccaaccctagagtttgacggcagacacacttttctgtgctgatagaagtcagaacagtgaccctctggggctggggtgatgactgggaagaggcactggggactcctcctgggtgtccggaatgttgtatatgttgatcgtgagggtgtggcatgtgtgtgtGTGAGTAGCATGTGGCATGTCTGTGGTGTGTATGCTATATGGAgtatgtgtatgtgtgtggtgtatgtagtgtgtatatatgtgtggtgtgtgtgtatttggtgtgtgtatgtgtgctgtgtgtactgtgtgttgtgtgtgcgttgtgtgtatgtgtggtgcat---gtgtgtgtgggttgtgacgtgtgttgtgtagcgtgtggtatgtctggtgtgtttgccatgtggtgtgtgtgtatgtgtggtgtgtgtatgtggtgtgtgtatttggtgtgtgtggtgtgttttgtgtgtaatgtagtgt--gtgttgtgtgttgtgca------tgtatgtgtgtgttgtgtggtgtgtgtgttgtatgtgtgttgtgtgtatgtgtgttgtgtgttttgtgtgtggtctagtgtgtggtgtgtgtatgtgtggtgtgtgtgtggtgtgtgtatgtgtgtggtgtgtgtctttggtgtgtatgttgtatgtgtgtatgtgtgtgtatggtgtgtgtgtgtggtgtgtgtgtttggtgtatgtggtgtgtgttttgtgtgtaatgtagtgtgtgtgttgtatgtgtgttgtgcatgtatatgtgtgtggtgtgtatatgtgtgttgtgtgtatgtgtgttgtgttgtatgtgtgttgtgt s panTro1.chr6 161393694 1726 + 161576975 attATGTATTCTGATATGATCCTTGAT---ATAATAATTGATATTATTGATATCAATTATTGGTAGATTGATATAATTGATATGATATTCTGatatgattactaaaagtttgttggctacttctgattgttctgataacttaagttctattcttttttaaaatgggaatttacaagaaatggctcgagttaagtgtcgcttatgtctgcaactcaatcaatgttgaggtactttatgagtcctgactagttgtgtctgcccagagcttcttgatatctgtttccttttaaatttactttaaAATAGCCAGTCTAACAATATTACATGTGCTTCATGCATTTAACTTCAAACATTGTTTTCTAAAGACTATCTTTGTTTATGGTATAACATTATAAAATACTATTTTATTTTGAATTAAAAACATCTGTTTTTCAGGTAATATCAAAAGAGGATACCAATGTGGCCTTTAAGAATATACACGTTTTCCATGTAATTATTTCtcattatttgttagggaagtgcattagacactcagtgcagaggctaaaattaaaaaggctgatcataccaagtcttggcaatggtatggagtaatagcactcacattgttgatcagggcatacatatgtgcaatccctttggaagactgtttggcagtaggtactacgaactagacatatgtccactgatgacctaacga-tcctctgctaggtacaaacccaagacaaa--tgtgtgtgtgtgtccaccagcatacacatccaagagcgtcgtagccaataagtacagacaacccagacatgcactgacggaacagtgggcagtggcttgtgctgtggtcacaccttggctccctctgtggcaggagaggacaggtgcacacagaacaacaacacgtcacagatgtgatgaagtggggggaagccagacacagaagtcctcaaagcaggagcccaaccctagagtttgacggcagacacacttctctgtgctgatagaagtcagaacagtgaccctctggggctggggtgatgactgggaagaggcactggggactcctcctgggtgtccggaatgttgtatatgttgatcgtgagggtgtggcatgtgtgtgtGTGAGTAGCATGTGGTATGTCTGTGGTGTGTATGCTATATGGAgtatgtgtatgtgtgtggtgtatgtagtgtgtatatatgtgtggtgtgtgtgtatttggtgtgtgtatgtgtgctgtgtgtactgtgtgttgtgtgtgcgttgtgtgtatgtgtggtgcatgtggtgtgtgtgggttgtgacgtgtgttgtgtagcatgtggtatgtctggtgtgtttgccatgtgatgtgtgtgtatgtgtggtgtgtgtatgtggtgtgtgtatttggtgtgtgtggaatgttttgtgtgtaatgtagtgtgcgtgttgtgtgttgtgcatctatgtgtatgcgtgtggtgcgtggtgtgtgtgttgtatctgtgt----tgtatgtgtgttgtgtgttttgtgtgtggcata--------------------------gtgtgtggtgtgtgtatgtgtgtggtgtgtgtctttggtgtg--tgttgtatgtgtgtatgtgtgtgtatggtgtgtgtgtgtggtgtgtgtgtttggtgtatgtggtgtgtgttttgtgtgtaatgta--gtgtgtgttgtacgtgtgttgtgcatgtatatgtgtgtggtgtgtatatgtgtgttgcccgtatg-----tgtgttgtatgtgtgttgtGT a score=9907.0 s hg17.chr7_random 31202 107 + 778964 gtgtgtgtggtgtagtgtgtgtggtgtgCATGTAAGATCCATTATGTTACATAAGATCCATTCAGGTTATGTGCGTCCATTTTCTCAGTATTCTCAGGTGCACACAG s panTro1.chr6 161395526 107 + 161576975 GTGTGTGTGGTGTAGTGTGTGTGGTGTGCATGTAAGATCCATTGTGTTACATAAGATCCGTTCAGGTTATGTGCGTCCATTTTCTCAGTATTCTCAGGTGCACACAG a score=54926.0 s hg17.chr7_random 31309 290 + 778964 GAAAATGCCTTCTTCACAGAGAAGCACATAATGGTGGACGCTTGAGTCCATTTGGAGAAAGACTGAGAACACTAACGTTTAACTTCCTGGATTCTTCTCAGCCAGTTGGTGGATTTTCTTTTAA-ACTTTACACATTTTATGTGGCTTCAAGGGACAGC-AAAATGTTACAAAACTGAAAGCCAAACAGAAATATGCCTTGAAGAAGTTGCAGACGCTGTTTTCTAAAAACACTGTTTTTGGTTCTGTCAGCAGGAAACGGCAGCTTTCTTTCTATGTCACAAACGATGGTG s panTro1.chr6 161395633 290 + 161576975 GAAAATGCCTTCTTCACAGAGAAGCACATAATGGTGGACGCTTGAGTCCATTTGGAGAAAGACTGAGAACACTAACGTTTAACTTCCTGGATTCTTCTCAGCCAGTTGGTGGATTTTCTTTTAA-ACTTTACACATTTTATGTGGCTTCAAGGGACAGC-AAAATGTTACAAAACTGAAAGCCAAACAGAAATATGCCTTGAAGAAGTTGCAGACGCTGTTTTCTAAAAACACTGTTTTTGGTTCTGTCAGCAGGAAACGGCAGCTTTCTTTCTATGTCACAAACGATGGTG s canFam1.chr16 22854921 284 + 60307850 GAGAGTTCTTTATGAAC--AGAAGCAGATAATGGCATATGCTGAAGTCCATTTGGGGAGAGACTAATATCTCTAACATTTAACTTTTTGGATTCTTTTCAACCATTTGGTGGATTTTTCTTTAATATTTTGGACATTTCACATGACTTCAAGGGACAGTGAAAATGCTACAAAGCTGAAAGCCAATCAAA---ATACTCTGAAGAAAATGC---CACCATTTCTTAGCAGCACTGTTCTTGGCTCCATCAGTGGCAAATTACAGTTTTCCTTCCATATCACAAATAACAATG a score=17513.0 s hg17.chr7_random 31599 185 + 778964 GCTCCTGGGGTCACCCAGTCAACAACAGCTGCCAAGACACCAGCTTCTCGAGGCACCGCCCTCCTGAGCTCTTGGCGCCACGAGGTCATTGGCCAAGCATTTGAAGAGTGAATCACCGGTGTGCGCGTGGACACCCAGGCCACTGCTGGGACCCTGCGACCTAGGCTGGCTGCTGCCGCTGCTTC s panTro1.chr6 161395923 185 + 161576975 GCTCCTGGGGTCACCCAGTCAACAACAGCTGCCAAGACACCAGCTCCTCGAGGCACCGCCCTCCTGAGCTCTTGGCGCCACGAGGTCATTGGCCAAGCATTTGAAGAGTGAATCACCGGTGTGCGCGTGGACACCCAGGCCACTGCTGGGACCCTGTGACCTAGGCTGGCTGCTGCCGCTGCCTC a score=39966.0 s hg17.chr7_random 31784 313 + 778964 TGAGCAAGGGGCTTGGGAAGGGTGCCTCAATAAGCTGCTGATTGCTGTGGCAGCT--GTGCCCTCTTCTGCC-AGCCTCTCTGCGAAATGATGTAAAACGTGCCCCAGAGCTGTCCC-TCCGAGGGCCATGAATGCCAAGGCACTCACCACCCTCTCCCTCCTTCCCCTGGCTGCTCCTGGGCAACAAGGCCCCACCAGAGACCCAGGTGGAAAGTGCGGGTTGTCTGAGCAAGGTGCGTCCT-GAGAGGGGAATGCTGAGGG---GCTGTGGG-CAGGATGGCACTTCCCACCCACCAAGTGCTCAGAGTGTCAGCATTGT s panTro1.chr6 161396108 313 + 161576975 TGAGCAAGGGGCTTGGGAAGGGTGCCTCAATAAGCCGCTGATTGCTGTGGCAGCT--GTGCCCGCTCCTGCC-GACCTCTCTGCGAAATGATGTAAAACGTGCCCCAGAGCCGTCCC-TCCGAGGGCCATGAATGCCAAGGCACTCACCACCCTCTCCCTCCTTCCCCTGGCTGCTCCTGGGCGACAAGGCCCCACCAGAGACCCAGGTGGAAAGTGCGGGTTGTTTGAGCAAGGTGCGTCCT-GATTGGGGAATGCTGAGGG---GCTGTGGG-CAGGATGGCACCTCCCACACACCAAGTGCTCAGCGTGTCAGCATTGT s canFam1.chr16 22855267 308 + 60307850 tgagagatggggaagagaaaggt-cattaacaaacagactgctgccatgcccacttggggctcagtcctgttgggcatctttgggagaggatgaggaatgtgcctcagaattgtttcatccaaggtatgtggatgccaag--attcaccttccagctcccacatgccattggtgctcctggg--gcagtgacttcccagA---------GGAGACTTGGGATTGCTTGAGGCAGGCACATCCTAGAGACGTGAGTGCTAAGGGCGTGCGGTGGGACACAGTGGTGTTTCCTAGCCAGGACACGCTCAGAACATTAGAACTGT a score=7168.0 s hg17.chr7_random 32097 178 + 778964 TTCCAAGTCACAGGTGAATGTCGAAATACACACCCCCTTCCTTCAACA-CCTTTTCTTCAGTCACAAATTTGGTGTTTAAAACTAAAATGAAGTTAAGAAAG----TGAACTATTTCAGACAAAACCTCCTTCCTCTTGATGCAACATAGTAAGAGATGTTGGTCCAGCTAAAATTATTTTCT s canFam1.chr16 22855575 181 + 60307850 TTCTAGGTTACATTTGAAAATCAAAATAGATTCTTTTTCCTGTTAGCAGTTTTTTTTTTCATCACAAATCTG--GTTTAAAACTAAAATGAAGTGGAGACAATCACTAAGGTATTTCAGACAAGACCTCTGAACTCCTGATGTAAAAAATTAAGAGATTTTGGTTCAGATGAAATCCTTTTCT a score=112947.0 s hg17.chr7_random 32423 1240 + 778964 aaagaagacatacaaatagcgaacaggttcatgaaaaaatgctcaacattactaatcattagagaaacgcaaatgaaaatcatgagctatcacatcacacctgttggaatggatattctcaaaaaagacgaaatgtaagcgttcatggggatgtggcgaaaagggaatccttgtaccctgttggagaaaacatgaattagttcagccattgtggaaaacagtatggaggttcctcaaaacactaaaactacaactaccatagtttccggcgatcccactaccgggcttacagccaaatgaaatggaatcagtatgtcgcacaggcacctgcacccccatgtttaccacaggactactcaccacagtcacgatgtggaagaaacctgtgtccatcagaggatgaatggctgaagtaaatgtggtattacacaatggaatactagtcagccttagaaaaggagaaaattctgtcacttatgacaacatggacaaacctggaggacgtcatgttaagtgaaataagtcaggcacagaaaggcaaatactgaacgacctcactacaagggctgaactcatggaagcagagggcgggatggttgttaccaggggctggggaaggagggaagggaggagatggggagatgtcagtcaaaggctgcaaagctttagttaggaggaatacgttctaatgatctattgcacagcagggtgactacagctaatgccagctgacctgggaacaatgagggcctgagctgcacaggtccacacagtcaggtctgcacagcagattcctcgtccacagccaaacactgagggatgagaatcccgtgtatgcggagggctgactttttgtatttgtgggttccgcagggccgactgtgggactggagtataagattttggtgtcttgtggatcctggaacccatcccccatggataccaacggatgcctgtatatgtttcaaaatcgataagagcaattctcttaacttcaaatgctcccaccacaaaataaggatcaagtatttgaggtgatgttaactagcttgattcaatcattccgcattgtatatatattgtaacatcaaatcctacctcaga-aatgtaacacaattatgatttgtcaattacaagtaTTCTAACAGTAGCGAAGAAAGGATCCTCTCCTGAAGGGCTCATTTGTGGTCGCTGCCTTCACCCTCCCTCGGGGTCTTTCTCTCACTTAAGCTTCTGCTCC s panTro1.chr6 161396748 1238 + 161576975 aaagaagacatacaaatagcgaacaggttcatgaaaaaatgctcaacattactaatcattagagaaatgcaaatgaaaatcatgagctatcacatcacacctgctggaatggttattctcaaaaaagacgaaatgtaagcgttggtggggatgtggcaaaaagggaatccttgtaccctgttggagaaaacataaattagttcagccattgtggaaaacagtatggaggttcctcaaaacactaaaactacaactaccatagtttccggcgatcccactaccgggcttacagccaaatgaaatgggatcagtatgtcgcacaggcacctgcacccccatgtttactgcaggactactcaccacagtcacgatgtggaagaaacctgtgtccatcagaggatgaatggctgaagtaaatgtggtattaaacaatggaatactagtcagccttaaaaaaggagaaaattctgtcacttatgacaacatggacaaacctggaggacgtcaagttaagtgaaataagtcaggcacagaaaggcaaatactgaacgacctcactacaagggctgaactcatggaagcagagggcgggatggtggttaccaggcgctggggaaggagggaagggaggagatggggagatgtcagtcaaaggctgcaaagctttagttaggaggaatacgttctaatgatctattgcacagcagggtgactacagctagtgccagctgacctgggaacaatgagggcctgagctgcacaggtccacacagtcgggtctgcacagcagattccttgtccacagccaaacactgagggatgagaatcccgtgtatgcggagggctgactttttgtatttgtgggttccgcagggccgactgtgggactggagtataagattttggtgtcttgtggatcctggaacccatcccccatggataccaacggatgcctgtatatgtttcaaaatcgataagagcaattctcttaacttcaaatgctcccaccacaaaataacgatcaagtatttgaggtgatgttaactagcttgattcaatcattccacattgcatatatattgtaacatcaaatcctacct---acaatgtaacacaattacgatttgtcaattacaagtaTTCTAACAGTAGCGAAGAAAGGATCCTCTTCTGAAGGGCTCATTTGTGGTCGCTGCCTTCACCCTCCCTCGGAGTCTTTCTCTCACTTAAGCTTCTGCTCC a score=84661.0 s hg17.chr7_random 33663 720 + 778964 TCTCACAAGCTCA-GGGTCATGTGTTTCCAGTACAGGGAGATATTTTG--AATGATTTCAGATTTTCTCTGCTTGTTTCTATGGCCCAAACTCAGTTCAGACCCCACATGCATGCCGTGGGTAGGCCAGAA------------------GGCCAGGGAACACGAGTGAGCACCGAAATCCACAGCG-------------------------ACATCCAAAAGGTGAGCGTGCGGCTGGAGATGGCGCAGGGCCTGGGCGTGCTTGCTGGACCTGGGAGATGTGTCATTGCCTGTTCCCAAATGGCGTTGTTGCATCCTGGGGTGAACTTTGAGGGAACACGAGCGACTCCATGCCACCTACCAAGTGAAAGGCAGGCCTGATGCCATGCCTGGGG-TGGGGTCCACATCTCCAGTGGTAGAGATGACT---CACCACACCACG--TGCTCCTCCGCCGCGCCCTTCCCACAGCACTGGCT-TAACCTGGGGG---ACTCTGAGTCCTTTATCAAG--GTTGTCCTGGGAGATGGGAGTTTAAACACCCAGCCCGCAAGGCCACGGCCATTCCCAGGCTTCTCTCTCCACACACCTGGGCTTTGTCAGTGGG-TGCAGTGATCGA----GGGCAT-AACCGGGCTCCATCCCAATGCTGCCTCATCCCTGCA-GTCACCCCGCACAGGTGACGCAGGCTTCAGAGGGCCCCGGA----CCTCGCCTGAGGGTGAAGAAAATCACGGCATCACTGACA-AGGCCGCCATGAGGATCGCGTGAGCAGAAACAC s panTro1.chr6 161397986 721 + 161576975 TCTCACAAGCTCA-GGGTCATGTGTTTCCAGTACAGGGAGATATTTTG--AATGATTTCAGATTTTCTCTGCTTGTTTCTACGGCCCAAACTCAGTTCAGACCCCACATGTGTGCCGTGGGTAGGCCAGAA------------------GGCCAGGGAACACGAGTGAGCACCGAAATCCACAGCG-------------------------ACATCCAAAAGGTGAGCGTGCGGCTGGAGACGGCGCAGGGCCTGGGCGTGCTTGCTGGACCTGGGAGATGTGTCATTGCCTGTTCCCAAATGGCGTTGTTGCATCCTGGGGTGAACTTTGAGGGAACACGAGCGACTCCATGCCACCTACCAAGTGAAAGGCAGGCCTGATGCCATGCCTGGGG-TGGGGTCCACATCTCCGGTGGCAGAGACGACT---CACCACACCACG--TGCTCCTCTGCCGCGCCCTTCCCACAGCACTGGCTGTAACCTGGGGG---ACTCTGAGTCCTTTATCAAG--GTTGTCCTGGGAGATGGGAGTTTAAACACCCAGCCCACAAGGCCACGGCCATTCCCAGGCTTCTCTCTCCACACACCTGGGCTTTGTCAGTGGG-TGCAGTGATCGA----GGGCAT-AACGGGGCTCCATCCCAATGCTGCCTCATCCCTGCA-GTCACCCCGCACAGGTGACGCAGGCTTCAGAGGGCCCCGGA----CCTCGCCTGAGGGTGAAGAAAATCATGGCATCACTGACA-AGGCCGCCATGAGGATCGCGTGAGCAGAAACAT s canFam1.chr16 22855874 742 + 60307850 TCTCTCAAGCTCATGTTTTATTTATTTCCAGTAGAGAGAGACATTTTGAAAAGAAATTATTATTTTTTCTGTTTGAGCTTGCAGCCAAACCTCAGTTCAGACTGCAAACGCATGCTATCTGCAGAATAGGGCCCTCCTTGCTGTATGTCTGGCATGGAGAGGGATTGGGGGGGAAAGACCAAAACATGAAAGTAGCTGTTCTTTCTGGCCTAGATCCACAAGGTGCTTGAGTGGCC--AGCCCGTGCAA-----GGATGTGGCCATTGGCCCTAGGAGGTCTACTATTTTCTATTCC----TGGCATTGTCACATCCTAGGATAAACATTGGAGAAA-----------------CATCTACTAAATGAAACCGAGGATCAATGCTAAGTCTGGTACTAAAGTATGATTTTCTAGTAGTGGAGATGGATTTGCAGTATGCTAAATCTACTCCTCACCCTCA-CCTTCTTATGGCATTGGCTATCACATGGGGTGTCACTGAGAGTCATTTATAAAGATGTTCTTCTGGGGGACTATCATCTACAGAGTTGG--CAATAGGCCA-AGTCAT--CGAGTTTGCACT--------------GCTTTGACAGTGGGACATAGTTCTTGACAAGGAGCATAAACCCAGGTTTAGCCCAGCATGGTCTGGTCCCTGCGTGTCATGTTACTGCGACTTCTTAACCTCTAGAAGGCAGAAAAGGtccttagcagcaacatgaagataataatagtgtccctgacataggctagtgttaagattaaatgagatgaaatgc a score=14112.0 s hg17.chr7_random 34383 155 + 778964 GATGATCATGGCTCACTGATGGGGCAGCTCTGAGGATCGCGTGAGCAGAAACACACAGATAATCACAGAATCACTGACGGGGCCGCTGTGAGGATCGCGTGAACAGAAACACACAGATAATCACAGAATCACTGACGGGGCCGCTGTGAGGATCC s panTro1.chr6 161398707 155 + 161576975 GATGATCATGGCTCACTGATGGGGCAGCTCTGAGGATCGCATGAGCAGAAACACACAGATAATCACGGAATCACTGATGGGGCCGCTGTGAGGATCCCATGAACAGAAACACACAGATAATCACAGAATCACTGACGGGGCCGCTGTGAGGATCC a score=2452.0 s hg17.chr7_random 34538 27 + 778964 CGTGAGCAGAAACACGATGATCATGGC s panTro1.chr6 161398692 27 + 161576975 CGTGAGCAGAAACATGATGATCATGGC a score=6997.0 s hg17.chr7_random 34565 85 + 778964 TCACTGATGGGGCAGCTCTGAGGATCGCGTGAGCAGAAACACACAGATAATCACAGAATCACTGACGGGGCCGCTGTGAGGATCC s panTro1.chr6 161398835 85 + 161576975 TCACTGACGGGGCCGCTGTGAGGATCCCATGAACAGAAACACACAGATAATCACGGAATCACTGACGGGGCCGCTGTGAGGATCC a score=2452.0 s hg17.chr7_random 34650 27 + 778964 CGTGAGCAGAAACACGATGATCATGGC s panTro1.chr6 161398692 27 + 161576975 CGTGAGCAGAAACATGATGATCATGGC a score=9557.0 s hg17.chr7_random 34704 112 + 778964 CGTGAGCAGAAACACACAGATAATCACAGAATCACTGACGGGGCTGCTGTGAGGATCCCGTGAACAGAAACACACAGATAATCACAGAATCACTGACGGGGCCGCTGTGAGG s panTro1.chr6 161398862 110 + 161576975 CATGAACAGAAACACACAGATAATCACGGAATCACTGACGGGGCCGCTGTGAGGATCCCGTGAACAGAA--ACACAGATAATCACAGAATCACTGACGGGGCCGCTGTGAGG a score=2499.0 s hg17.chr7_random 34831 44 + 778964 ACATGGATGATCACGGC-TCACTGACGGGGCAGCTCTGAGGATCA s panTro1.chr6 161399103 45 + 161576975 ACACGGACGATCACAGCATCACTACCGAGACGGCTCTGAGGATCC a score=4183.0 s hg17.chr7_random 34875 81 + 778964 CGTGAGCAGAAACACACAGATAATCACAGAATCACTGACGAGGCCT--------------CTGTGAGGATCCCGTGAGCAGAAACATGGATGATC s panTro1.chr6 161399034 81 + 161576975 CGTGAGCAGAAACACACAGATAACCA--------------AGGCCTGACCAACGGGGCTGCTGGGAGGATCCCGTGAGCAGAAACACGGACGATC a score=2934.0 s hg17.chr7_random 34956 59 + 778964 GCGGCCTGACTGGCGGGGCTGCTGTGAGGATCATATGACCAGAAACACGTGGAAGATCA s panTro1.chr6 161398943 59 + 161576975 ACAGAATCACTGACGGGGCCGCTGTGAGGGTTGCGTGAGCAGAAACACACAGATAATCA a score=1688.0 s hg17.chr7_random 35042 19 + 778964 ATTGCGTGAGCAGAAACAC s panTro1.chr6 161398972 19 + 161576975 GTTGCGTGAGCAGAAACAC a score=9135.0 s hg17.chr7_random 35154 124 + 778964 CGTGAGCAGAAACACAGATAATCACAGAATCACTGAGGGGGCCACTGTGAGGATCGCATGAGCAGAAACACACAGATGATCAC-GGCTCACTAATGGGGCCGCTGCGAGAATCGCGTGAGCAGAA s panTro1.chr6 161398920 125 + 161576975 CGTGAACAGAAACACAGATAATCACAGAATCACTGACGGGGCCGCTGTGAGGGTTGCGTGAGCAGAAACACACAGATAATCACAGAATCACTGACAGGGCCACTGTGAGGATCCCGTGAGCAGAA a score=11384.0 s hg17.chr7_random 35284 165 + 778964 ATGATCATGGCTCACTGACGGGGCAACTCTGAGGATCACGTGAGCAGAAACACACAAATAATCACAGAATCACTGACGGGGCCACTGTGAGGATCGCGTGAGCAGAAACACACAGATAACCAAGGCCTGACCA---------ACGGGGCTGCTGGGAGGATCCCGTGAGCAGAA s panTro1.chr6 161398708 165 + 161576975 ATGATCATGGCTCACTGATGGGGCAGCTCTGAGGATCGCATGAGCAGAAACACACAGATAATCACGGAATCACTGATGGGGCCGCTGTGAGGATCCCATGAACAGAAACACACAGATAATCA---------CAGAATCACTGACGGGGCCGCTGTGAGGATCCCATGAACAGAA a score=4478.0 s hg17.chr7_random 35507 187 + 778964 CTGGTGTGTTATGCTTTAAAGCTTTTCCTTGATCTTGGTGATTTCACGTCTTAGGAAACCTCCCTCACTAATCAGCCGGCCCCGTGGGCAATGCAGCTTCTCCTGAAAAGCAAACACTTCAACTTTCAGGCTTCGTGGCCACTGACCCGCTTCTGGCCAGGGGCAGCCTCCTCCCTACCCCTCGTGT s canFam1.chr16 22857050 165 + 60307850 CTAATGTGTT---TTTTAAATGTTCACCTTGATCTTGG----------------GAAGCCTCTCTTAGTAACCAACCCACCT-ATGTCCAGCACAGCTTCTATAGAACAGCAAATGTCTCAACTTTCAAGCGTAAAAGCCA-TGAGTTGTCCCTGGCTGGATGTAATGCCCT-TCTACCTCCTTTGT a score=11516.0 s hg17.chr7_random 35710 138 + 778964 GGACATCTGTCACGATGCCATTTGAGACGGAAAGGGCACTGGGCCAGTGTCTGGAACTGGCCCGCACGCCTCAGGTCATCTGTCACGATGCCGTTTGAGAGGGAAAGGGCACTGGGCCGGCGTCTGGAACTGGCCCCC s panTro1.chr6 161399363 138 + 161576975 GGACATCTGTCACGATGCCATTTGAGACGGAAAGGGCACTGGGCTGGCATCTGGAACTGGCCCCCATGCCTCAGGTCATCTGTCATGATGCCATTTGAGACGGAAAGGGCATTGGGCAGGCGTCCGGAACTGGCCCCC a score=6217.0 s hg17.chr7_random 35860 72 + 778964 ATCTGTCACGATGCCGTTTGAGAGGGAAAGGGCACTGGGCCGGCGTCTGGAACTGGCCCCCACGCCTCAGGT s panTro1.chr6 161399367 72 + 161576975 ATCTGTCACGATGCCATTTGAGACGGAAAGGGCACTGGGCTGGCATCTGGAACTGGCCCCCATGCCTCAGGT a score=6328.0 s hg17.chr7_random 35932 73 + 778964 CATCTGTCACGATGCCGTTTGAGACGGAAAGGGCACTGGGCCGGCGTCTGGAACTGGCCCACACGCCTCAGGT s panTro1.chr6 161399366 73 + 161576975 CATCTGTCACGATGCCATTTGAGACGGAAAGGGCACTGGGCTGGCATCTGGAACTGGCCCCCATGCCTCAGGT a score=31916.0 s hg17.chr7_random 36005 365 + 778964 CATCTGTCACGATGCCGTTTGAGACGGAAAGGGCACTGGGCCGGCGTCTGGAACTGGCCCCCACGCCTCAGGTCATCTGTCACGATGCCGTTTGAGACGGAAAGGGCACTGGGCCGGCGTCTGGAACTGGCCCACACGCCTCAGGTCATCTGTCACGATGCCGTTTGAGACGGAAAGGGCACTGGGCCGGCGTCTGGAACTGGCCCACACGCCTCAGGTCATCTGTCACGATGCCGTTTGAGACGGAAAGGGCACTGGGCCGGCGTCTGGAACTGGCCCCCACGCCTCAGGTCATCTGTCACGATGCCGTTTGAGACGGAAAGGGCACTGGGCCGGCGTCTGGAACTGGCCCCCACGCCTCAGGT s panTro1.chr6 161399366 365 + 161576975 CATCTGTCACGATGCCATTTGAGACGGAAAGGGCACTGGGCTGGCATCTGGAACTGGCCCCCATGCCTCAGGTCATCTGTCATGATGCCATTTGAGACGGAAAGGGCATTGGGCAGGCGTCCGGAACTGGCCCCCATGCCTCAGGTCATCTGTCACGATGCCGTTTGAGACGGAAAGGGCACTGGGCCGGTGTCTGGAACTGGCCCCCATGCCTCAGGTCATCTGTCACGATGCCGTTTGAGACGGAAAGGGCACTGGGCGGGCATCCGGAACTGGCCCCCATGCCTCAGGTCATCTGTCACGATGCCATCTGAGATGGAAAGGGCACTGGGCGGGCGTCCGGAACTGGCCCCCACGCCTCAGGT a score=6252.0 s hg17.chr7_random 36370 73 + 778964 CATCTGTCACGATGCCGTTTGAGAGGGAAAGGGCACTGGGCCGGCGTCTGGAACTGGCCCCCACGCCTCAGGT s panTro1.chr6 161399658 73 + 161576975 CATCTGTCACGATGCCATCTGAGATGGAAAGGGCACTGGGCGGGCGTCCGGAACTGGCCCCCACGCCTCAGGT a score=6110.0 s hg17.chr7_random 36443 73 + 778964 CATCTGTCACGATGCCGTTTGAGACGGAAAGGGCACTGGGCCGGCGTCTGGAACTGGCCCGCACGCCTCAGGT s panTro1.chr6 161399658 73 + 161576975 CATCTGTCACGATGCCATCTGAGATGGAAAGGGCACTGGGCGGGCGTCCGGAACTGGCCCCCACGCCTCAGGT a score=6459.0 s hg17.chr7_random 36516 73 + 778964 CATCTGTCACGATGCCGTTTGAGACGGAAAGGGCACTAGGCCGGCGTCTGGAACTGGCCCACACGCCTCAGGT s panTro1.chr6 161399512 73 + 161576975 CATCTGTCACGATGCCGTTTGAGACGGAAAGGGCACTGGGCCGGTGTCTGGAACTGGCCCCCATGCCTCAGGT a score=12656.0 s hg17.chr7_random 36589 146 + 778964 CATCTGTCACGATGCCGTTTGAGACGGAAAGGGCACTGGGCTGGCGTCTGGAACTGGCCCCCATGCCTCAGGTCATCTGTCACGATGCCGTTTGAGACGGAAAGGGCACTGGGCCGGCGTCTGGAACTGGCCCACGCGCCTCAGGT s panTro1.chr6 161399366 146 + 161576975 CATCTGTCACGATGCCATTTGAGACGGAAAGGGCACTGGGCTGGCATCTGGAACTGGCCCCCATGCCTCAGGTCATCTGTCATGATGCCATTTGAGACGGAAAGGGCATTGGGCAGGCGTCCGGAACTGGCCCCCATGCCTCAGGT a score=17013.0 s hg17.chr7_random 36735 208 + 778964 CATCTGTCACGATGCCGTTTGAGAGGGAAAGGGCACTGGGCTGGCATCTGGAACTGGCCCACACGCCTCAGGTCATCTGTCACGATGCCGTTTGAGAGGGAAAGGGCACGGGGCCGGTGTCTGGAACTGGCCCGCATGCCTCAGGTCATCTGTCACGATGCCGTTTGAGAGGGAAAGGGCACGGGGCCGGTGTCTGGAACTGGCCCGA s panTro1.chr6 161399366 208 + 161576975 CATCTGTCACGATGCCATTTGAGACGGAAAGGGCACTGGGCTGGCATCTGGAACTGGCCCCCATGCCTCAGGTCATCTGTCATGATGCCATTTGAGACGGAAAGGGCATTGGGCAGGCGTCCGGAACTGGCCCCCATGCCTCAGGTCATCTGTCACGATGCCGTTTGAGACGGAAAGGGCACTGGGCCGGTGTCTGGAACTGGCCCCC a score=24895.0 s hg17.chr7_random 36943 266 + 778964 ATGCCTCAGGTCATCTGTCACGATGCCGTTTGAGACGGAAAGGGCACTGGGCCGGTGTCTGGAACTGGCCCGCATGCCTCAGGTCATCTGTCACGATGCCGTTTGAGACGGACAGGGCATTGGGCGGGCGTCCGGAACTGGCCCCCATGCCTCAGGTCATCTGTCACGATGCCATCTGAGATGGAAAGGGCACTGGGCGGGCATCCGGAACTGGCCCCCACGCCTCAGGTGGGTCTGGCAGGCTGCATTTGTCCCTGGGCCTTGGT s panTro1.chr6 161399501 266 + 161576975 ATGCCTCAGGTCATCTGTCACGATGCCGTTTGAGACGGAAAGGGCACTGGGCCGGTGTCTGGAACTGGCCCCCATGCCTCAGGTCATCTGTCACGATGCCGTTTGAGACGGAAAGGGCACTGGGCGGGCATCCGGAACTGGCCCCCATGCCTCAGGTCATCTGTCACGATGCCATCTGAGATGGAAAGGGCACTGGGCGGGCGTCCGGAACTGGCCCCCACGCCTCAGGTGGGTCTGGCAGGCTGCATTTGTCCCTGGGCCTTGGT a score=67011.0 s hg17.chr7_random 37209 408 + 778964 TTTTCCTTCTTCTTGAATAATTAGGAGTCCCTGAAAAGCAATATTTTCCTGGAATCCTCAGCTAAACCAGAAGCTCCTACACACCAAGCCAGAAGAACATGCTTCCAAATTTCCTGTGGGTGGATTGACCTGTAGGAACAGGATTTATTATTTTGTTTTCCAGACAGAAGAAATTCT-GTTTCTTAACATTTGCAAACTCTTAGTCCAAGAATGTGGGGGAATTATAATGTATTTCAGAGTTACTCGTGGGTACAATTTTGAAGTAGGTCA-----------------------TGTGACTTTTA---GCTTCTTCCTTTTTGAGCTGTCCAGGTCCCTCCTGTGAACACTCAGCTGCCCCCGACCCGCACTACGAT-------------CGTGTCCCTGGGGG---------AACGCCCGCCTGCACTTGGCATCTTTCCTGTCCGTCTGTGTGAG s panTro1.chr6 161399767 406 + 161576975 TTTTCCTTCTTCTTGAATAATTAGGAGTCCCTGAAAAGCAATATTTTCCTGGAATCCTCAGCTAAACCAGAAGCTCCTACACACCAAGCCAGAAGAACATGCTTCCGAATTTCCTGTGGGTGGATTGACCTGTAGGAACAGGATTTATTATTTTGTTTTCCAGACAGAAGAAAT--T-GTTTCTTAACATTTGCAAACTCTTAGTCCAAGAATGTGGGGGAATTATAATGTATTTCAGAGTTACTCGTGAGTACAATTTTCAAGTAGGTCA-----------------------TCTGACTTTTA---GCTTCTTCCTTTTTGAGCCGTCCAGGTCCCTCCTGTGAACACTCAGCTGCCCCCGACCCACACTACGAT-------------CGTGTCCCTGGGGG---------AACCCCCGCCTGCACTTGGCATCTTTCCTGTCTGTCTGTGTGAG s canFam1.chr16 22857327 450 + 60307850 TTCTCCCTCTTCCTGAATAATGAGGAGTCCCAG-AAAGCACTGTCCTTCTGGAACCCTCCTCCATGCCAGAAGGTTCTGCACATAAAGCCA-AAGAAAATGGTTCTGAATTTCCTGTGGGTGGACTGACAGGCACAACCAGGATTTATTATTTTATTTTCCAGACAGAAGAAAGTCTAGTTTCTTAACATTTGCAGATTTTCCATCCAAGAATGCAGAGAAATCTTCATTTATTCCAGGGTCAGTTGTGGGCACAATTTTGAAGCTGGTCAAACACATTCtttttgtttttgtttttgtttttTCCTTGCTTTGTCCTCTCTGAGCTATCCAGAACCC-CAGGTGTACACTTGACTGTCTGAGAGC----CTTCGATGCAGGAAAGCCAGCCTCTTCCTTTGGGTGTCCTGCCAAAACTCATCTGCCCTGTATTTCTTTTCTTTTTTTTTTTTTTAG a score=18254.0 s hg17.chr7_random 37617 116 + 778964 TCCCGTCAAAACAGCCATGACTGAGGTACAAACATCTGATAATGATAAACTATCAGAAATACTGATTGCTCCTCAGTTGGCACAGGTTGTAATGATTT-AAACGTGTCTGCCTCCCT s panTro1.chr6 161400173 116 + 161576975 TCCCGTCAAAACAGCCATGACTGAGGTACAAACATCTGATAATGACAAACTATCATAAATACTGATTGCTCCTCAGTTGGCACAGGTTGTAATGATTT-AAACGTGTCTGCCTCCCT s canFam1.chr16 22857990 111 + 60307850 CTCTGCAAAAGTAATCATTGCTGAGCTACAAACATC------TGACTTAATACTATAATTTCTGAGTAAGCCTCAGTTGGCATTGGCCACAATGATTTAAAATTTATCTGCCTTCTT a score=220702.0 s hg17.chr7_random 37733 2392 + 778964 CAATGGCTTTGTTTTCAGTTTTCTTTGTAGGAATATATTACAGCCTCTTCTGTTGGCTATAAAATTCACCCATAGCTGGGTAATTGAAAAAATAGCAATCCTGATTTTATAGACAGCTGGTGAGAAGTCCTGTTAGGTATTTGAACTTTTTTCATGcaggcataccttagcgatattgtggatctagttcagactaccataatcaaatgaatatcacaataaagcaagtcacacaaattttttggtttttcaatgcatataaaagttatttttatgctatattgtagtctttccagtgtgcaatagcattatgtctaagaaacattgtatataccttaattgaaagactattgctaaaaatgctaatgagatctgagctgtcagcaggtggaaatccttgctgatgatggggtctttccttgatgttgatggctgctgactgatcagagtgggcgctgctgaaagctgggatggctgtggcaatttcttaaaacaatgatgaagttggctgcattgactgactcttcctttcacaaaacctttctctatcatgatgctgtttgacaacattttatccccagtagaacttctttcaaaattggaatcaacctcctaaactctgctgctgctttatcaactaggtttatttaata---------ttctgttgtcatttcaacaatattcacagcattttcaccaggagtagattccatcttaagtcattttctttacttactcataagaagcatctttttatccatgtaagtttgatgatgagattgcagcagttcagtcccatcttcaggctccacttctaactctggttctcttgctctttccaccacatctctggttccttcctccaccaaagtcttgaacccctcatggtcatccat--gagctggaatcaacttcttccaaactcctgtgaatgttgatattttgaccccctctcgtgaatcccaaatgttcttaatgacatctagagtggtgaatttttttctgaaaggttttcaatttactttgcccagatctatctgaggaattactatctatggcagttatggatgtatgaaatatatttcttaaatgagactcaaaagtttagatgactccatgggctgaagaatggttgttgtttcagccggcatgagaacaacattcattctccatcagagctcttgggtgaccaggtgcattgtcgatgagcagtaatattttgaaaggaatattttttgggcagtaggtctcaacagtgggcttaaaatattcagtaaaccatgctgtaaacagatgtgttgtcatccaggctttgttgttccgtttatagagcacaggtagagtagatttagtataattcttaaaggtcctagtatttttggaatagtaaatgagcattaacttcaacttcaagtcaccagtggcattagcccctcacaagagactcagcctgtccttcgaagctttgaagccaggcattggcttctcctctctagctatgaaggtcttaggtggcatcttcttccaaaagctggctgcttcacctacactgaaaatctgttgtctagtgtagcctccttcatcactgatcttagctagatcttctagataacttactgcagcttcaccttgcactttatgttatggagatggcttctttccttatacctcatgaaccaacccctgtgagcttccaacttttcttctgcagcttcctctcctctcttggatttcacagaattgaagagagttcagcctgtcacctctggattaggctgttttgctttctcatcatttatttgttcactggggcagcacttttactttccttcatgaacttttcctttgcattctcagcttggctaaccatttttcacaacaggcctcgatttcggtctttcatgcctttcaacatgggttcctcactaagcttaaccatttctagcttttgatttaaggtgagagaggtgtggctttttctttcatgtgagcacttagaggcacttgccaaatttaaatattcttgagtcttaggaaatagggaggcccaaggagtgggagagagatggggggaaggttggttggtggggccattggaacttacaacatgtattaagttggccaccttatatgggtccccaaaccattacaatagtaacattaaagatcaacagtcacagattaccataacatttgtaataatgaaaaagtttggaatattatggtaattatcaaaatgtgacacagaaacatgaagtgagcacatgctgttggaaaaatggcacctatagcctcactcaattcagggttgctacaaaccttcagtttgtgagaaaagcagcacctgtgaaacacaataaagggaagtgcagtaaaacgaggCCTGTGGGTTCTCCTTCT s panTro1.chr6 161400289 2403 + 161576975 CAATGGCTTTGTTTTCAGTTTTCTTTGTAGGAATATATTACAGCCTCTTCTGTTGGCTATAAAATTCACCCATAGCTAGGTAATTGAAAAAATAGCAATCCTGATTTTATAGACAGCTGGTGAGAAGTCCTGTTAGGTATTTGAACTTTTTTCATGcaggcataccttagcgatattgtggatctagttcagaccaccataatcaaatgaatatcacaataaagcaagtcacacaaattttttggtttttcaatgcatataaaagttatttttatgctatattgtagtttttccagtgtgcaatagcattatgtctaagaaacattgtatataccttaattgaaagactattgctaaaaatgctaatgatatctgagctgtcagcaggtggaaatccttgctgatgatggggtctttccttgatgttgatggctgctgactgatcagagtgggcgctgctgaaagctgggatggctgtggcaatttcttaaaacaatgatgaagtttgctgcattgactgactcttcctttcacaaagcctttctctatcatgatgctgtttgacaacattttatccccagtagaacgtctttcaaaattggaatcaacctcctaaactctgctgctgctttatcaactaggtttatttaatattctaaatcttctgttgtcatttcaacaatattcacagcattttcaccaggagtagattccatcttaagtcattttctttacttactcataagaagcatctttttatccatgtaagtttgatgatgagattgcagcagttcagtcccatcttcaggctccacttctaactctggttctcttgctctttccaccacatctctggttccttcctccaccaaagtcttgaacccctcatggtcatccatgagagctggaatcaacttcttccaaactcctgtgaatgttgatattttgaccccctctcgtgaatcccaaatgttcttaatgacatctagggtggtgaatttttttctgaaaggttttcaatttactttgcccagatctatctgaggaatgactatctatggcagttatggatgtatgaaatatatttcttaaatgagactcaaaagtttagatgactccatgggccgaagaatggttgttgtttcagccggcatgagaacaaaattcattctccatcagagctcttgggtgaccaggtgcattgtcgatgagcagtaatattttgaaaggaatatttttggggcagtaggtctcaacagtgggcttaaaatattcagtaaaccatgctgtaaacagatgtgttgtcatccaggctttgttgttccgtttatagagcacaggtagagtagatttagtataattcttaaaggccctagtatttttggaatagtaaatgagcattaacttcaacttcaagtcaccagtggcattagcccctcacaagagactcagcctgtcctttgaagctttgaagccaggcattggcttctcctctctagctatgaaggtcttaggtggcatcttcttccaaaagctggctgcttcacctacaccgaaaatctgttgtctagtgtagcctccttcatcactgatcttagctagatcttctggataacttactgcagcttcaccttgcactttatgttatggagatggcttctttccttataccgcatgaaccaacctctgtgagcttccaacttttcttctgcagcttcctctcctctcttggatttcacagaattgaagagagttcagcctgtcacctctggattaggctgttttgctttctcatcatttatttgttcactggggcagcacttttactttccttcacgaacttttcctttgcattctcagcttggctaaccatttttcacaacaggcctcgatttcagtctttcatgcctttcaacatgggttcctcactaagcttaaccatttctagcttttgatataaggtgagagaggtgtggctttttctttcatgtgagcacttagaggcacttgccaaatttaaatattcttgagtctcaggaaatagggaggcccaaggagtgggagagagatggggggaaggttggttggtggggccattggaacttacaacatgtattaagttggccaccttatatgggcctccaaaccattacaatagtaacattaaagatcaacagtcacagattaccataacattcataataatgaaaaagtttggaatattatgggaattatcaaaatgtgacacagaaacatgaagtgagcacatgctgttggaaaaatggcacctatagactcactcaattcagggttgctacaaaccttcagtttgtgagaaaagcagcacctgtgaaacacaataaagggaagtgcagtaaaacgaggCCTGTGGGTTCTCCTTCT a score=200.0 s hg17.chr7_random 40125 2 + 778964 GG s panTro1.chr6 161402724 2 + 161576975 GG a score=5321.0 s hg17.chr7_random 40127 56 + 778964 GCTGCCGAATTTCCTGTGGGTTCTCCTGGGCTGCCGGATTTCCTGTGGGTTCTCCT- s panTro1.chr6 161402726 56 + 161576975 GCTGCCGAATTTCCTGTGAGTTCTCCTGGGCTGCCAAATTTCCTGTGGGTTCTCCT- s galGal2.chr26 1835090 48 + 4255270 GCAGCCGCCGCTCCCTTTGGTGCCTCTCCG---------TCCCTTTGGGGTCCCCCC a score=-266.0 s hg17.chr7_random 40183 17 + 778964 GGGCTGCCGAATTTCCT s galGal2.chr26 1835138 14 + 4255270 GGGGTCCCTGAATC--- a score=291.0 s hg17.chr7_random 40197 3 + 778964 CCT s panTro1.chr6 161402674 3 + 161576975 CCT a score=1173.0 s hg17.chr7_random 40200 4 + 778964 GTGG s panTro1.chr6 161402677 4 + 161576975 GTGG s galGal2.chr26 1835152 4 + 4255270 GTGG a score=6618.0 s hg17.chr7_random 40204 134 + 778964 GTTCTCCTTCTGGGCTGCCGGATTTCCTGTGGGTTCTCCTTCTGGGCTGCCAAATCT-CCTGTGGGT--TCTTCTGGGCTGCCGAATTTCCTGTGGGTTCTCCT---GGGCTGCT---GAATTTCCTGTG-GGTTCTCCTTCTG s panTro1.chr6 161402681 105 + 161576975 GTTCTCCTTCTGGGCTGCTGAATTTCCTGTGAGTTCTCCT--------------------------------TCTGGGCTGCCGAATTTCCTGTGAGTTCTCCT---GGGCTGCC---AAATTTCCTGTG-GGTTCTCCTTCTG s galGal2.chr26 1835156 119 + 4255270 GGTTCCCCCCTGG----------TTCCTTTGGGGTCCCCT----GGTTCCTGCTGCTCCCCCCTGGT--TCCTTTGGGGTCCCCTGGTTCCTGCTGCTCCCCCC---TGGCTCCTTTGGGGTCCCCTG------GTTCCTGCTG s fr1.chrUn 41315316 121 - 349519338 GTTTTCCCCCAGGGTTGGGGTTCTCCTCCATGGTTCTCCTCCAGGGTTG--------------GGGTCCTCCTCCAGGGTCC-----TTCTCCAGGGTTCTCCTCCAGGGTTGG----GGTCCTCCTCCATGGTCCTCCTCCAG a score=1141.0 s hg17.chr7_random 40245 28 + 778964 CTGGGCTGCCAAATCTCCTGTGGGTTCT s panTro1.chr6 161402751 28 + 161576975 CTGGGCTGCCAAATTTCCTGTGGGTTCT s galGal2.chr26 1835189 23 + 4255270 TCCTGCTGC----TCCCCCCTGGTTCC- s fr1.chrUn 41315357 15 - 349519338 CAGGGTTG-------------GGGTCCT a score=7685.0 s hg17.chr7_random 40338 57 + 778964 GGCTGCCGGATTTCCTAT-GGGTTCTCCT---GG-----GCTGCCAGATTTCCTGTGGGTTCTCCT s panTro1.chr6 161402725 57 + 161576975 GGCTGCCGAATTTCCTGT-GAGTTCTCCT---GG-----GCTGCCAAATTTCCTGTGGGTTCTCCT s galGal2.chr26 1835275 57 + 4255270 CTCCGCCCTGCTTCCTCT-GGGGTCCCCT---GGTTCCTGCTGC-----TCCCCCCAGGTTCCTTT s fr1.chrUn 41315437 54 - 349519338 -------GGTTCTCCTCCAGGGTTCTCCTCCAGG-----GTTGGGGTCCTCCTCCAGGGTCCTCCT a score=8052.0 s hg17.chr7_random 40395 61 + 778964 GGGCTGCCGAATTTCCTGTGGGTTC-----TCCTTCTGGGCTGCCGGATTTCCTGTGGGTTCTCCT s panTro1.chr6 161402692 61 + 161576975 GGGCTGCTGAATTTCCTGTGAGTTC-----TCCTTCTGGGCTGCCGAATTTCCTGTGAGTTCTCCT s galGal2.chr26 1835332 66 + 4255270 GGGGTCCCTGAATTGTGGTGGTTTCCCCAGTCCCTTTGGCATCCCTGGTTGCCTGTGGGGTTCCCC s fr1.chrUn 41315494 35 - 349519338 GGGTTG-------------GGGTCC-----TCCTCCAGGGTTG-------------GGGTCCTCCT a score=7125.0 s hg17.chr7_random 40456 70 + 778964 GGGCTGCTGAATTTCCTGTGGGTTCTCC---------------TTCTGG-GCTGCCGGATTTCCTATGGGTTCTC----------CTGGGCTGCCA s panTro1.chr6 161402692 70 + 161576975 GGGCTGCTGAATTTCCTGTGAGTTCTCC---------------TTCTGG-GCTGCCGAATTTCCTGTGAGTTCTC----------CTGGGCTGCCA s galGal2.chr26 1835411 96 + 4255270 GGGTCCCTCTGGTTCCTTTAGGATCTCCAGGTTCCTTTGAGGTTCCTGGTGCTCCCCCAGTTCCTTTGGGGTCTCTGAACTGTGGCGGGGCCTCCC s fr1.chrUn 41315532 51 - 349519338 GGGTTGGGGTCCTCCTCCAGGGTTCTCC---------------TCCAGG-GTTG-------------GGGTCCTC----------CT------CCA a score=408.0 s hg17.chr7_random 40526 20 + 778964 GATTTCCTGTGGGTTCTCCT--- s galGal2.chr26 1835508 18 + 4255270 G--TTCCTTTGGGGTCCCCT--- s fr1.chrUn 41315583 13 - 349519338 ----------GGGTTCTCCTCCA a score=7867.0 s hg17.chr7_random 40546 94 + 778964 GGGCTGCCGAATTTCCTGTGGGTTC--------TCCTTCTGGGCTGCCGGATTTCCTGTGGGTTCTCCTGGGCTGCTGAATTTCCTGTGGGTTCTCC---TTCTG--- s panTro1.chr6 161402692 94 + 161576975 GGGCTGCTGAATTTCCTGTGAGTTC--------TCCTTCTGGGCTGCCGAATTTCCTGTGAGTTCTCCTGGGCTGCCAAATTTCCTGTGGGTTCTCC---TTCTG--- s galGal2.chr26 1835526 85 + 4255270 ---------GGTTCCCAGCGGATCCCCCCCAGTTCCTTTCGGATCTCAGA--TTCTTTTGGGGTCCCCTGGG---------TTCCGTTGGGGTCCCTGAATTGTG--- s fr1.chrUn 41315596 94 - 349519338 GGGTTGGGGTCCTCCTCCAGGGTTC--------TCCTCCAGGGTTGGGGTCCTCCTCCAGGGTTCTCCTCCAGGGTTGGGGTCC---TGGTCTCTAT---TCCAGCAG a score=333.0 s hg17.chr7_random 40640 5 + 778964 GGCTG s galGal2.chr26 1835614 5 + 4255270 GGTTC s fr1.chrUn 41315690 5 - 349519338 TGCTG a score=86.0 s hg17.chr7_random 40645 3 + 778964 CCG s galGal2.chr26 1835619 3 + 4255270 CCT a score=5386.0 s hg17.chr7_random 40648 76 + 778964 AATTTCCTGTGGGTTC--------TCCTTCTGAC----ACAGCA---------GGATTCCTGGTGTCCTTCATCTCCCTGCACGTCATCCATTTAGC- s panTro1.chr6 161402762 80 + 161576975 AATTTCCTGTGGGTTC--------TCCTTCTGACTGACACAGCA---------GGATTCCTGGTGTCCTTCATCTCCCTGCACGTCATCCATTTAGC- s galGal2.chr26 1835622 90 + 4255270 GGTTTCTTCGGGGTACCCCCTGGTTCCTTTGGAG----TCTGTGGTTCCCTGTGGGTCCCCGGTTCCTTTTGGGTCCC----CCTGGTTCCTTTGGGA a score=21904.0 s hg17.chr7_random 40724 130 + 778964 TTCCAAATCTCACCTGCATCCAGCTCCAACTCCTCC--ACGCCCTGCTGAATGTCTCCAATTTCTTAGCAGAACATCTCAGCTCTGCTCATGCCTCC--ACCTGCGTGTCTGC------CGCCTGCATCAACGCACTGAG s panTro1.chr6 161402842 130 + 161576975 TTCCAAATCTCACCTGCATCCAGCTCCAACTCCTCC--ACGCCCTGCTGAATGCCTCCAATTTCTTAGCAGAACATCTCAGCTCTGCTCATGCCTCC--ACCTGCGTGTCTGC------CGCCTGCATCAATGCACTGAG s canFam1.chr16 22867999 138 + 60307850 TTCCATTTCTCACCTGGATCCAGTCTGAACTCCTCC--AGTTCTCTCTAAATTTCTCCAGTCTTAATAAAGAACAATTCAGCTCTGCTCTTGCCTCCTTGCCTCCATCTCTACATTTATCCCCATCGTCAACACACTGGA s galGal2.chr26 1835712 128 + 4255270 TCCCAGATTCCTTTGGGGTCC--CCCCCATTCCTTTGGAGTTCCTGGTGGGTCCCTTCAGTTCCTTTG--GAGTCTCCCGGTTCCTTTGGGGTTCCC--TGATCAGTTCCTGC------TTGCAGCCCCCACTCCCGGAG a score=43051.0 s hg17.chr7_random 40854 277 + 778964 GGCTCTGCCAGACCCAGGACTTGCCACGCTTCAGAATCA-GTAAGTTAATACTTCTGAAGGGACTTTAGCTTTTCTGGCATATAGCAAGTTGAATAAATGTGTGTTTTC-----GTTAGTCTCTGTTTAATTAACCAAAAAA--TTATTTCAATAA-----TACTGAGGTTTTTTGGGTC--TCGGTACATTT--TTTTGATACTTAAATGTCTCACGTGGCCCACTGGAGAGGAGAC-ATATTTTCAGCATATA--TGACTATGAAACACTGTTTATGTTTCCTTGGGGGTAAGAA s panTro1.chr6 161402972 281 + 161576975 GGTTCTGCCAGACCCAGGACTTGCCACGCTTCAGAATCA-GTAAGTTAATACTTCTGAAGGGACTTTAGCTTTTCTGGCATATAGCAAGTTGAATAAATGTGTGTTTTC-----GTTAGTCTCTGTGTAATTAACCAAAAAA--TTATTTCAATAA-GTAATACTGAGGTTTTTTGGGTC--TCGGTACATTT--TTTTGATACTTAAATGTCTCACGTGGCCCACTGGAGAGGAGAC-ATATTTTCAGCATATA--TGACTATGAAACACTGTTTATGTTTCCTTGGGGGTGAGAA s canFam1.chr16 22868137 294 + 60307850 GG-GCTGTGAGACCTGGAATTTACCACtcgttaggattatataaggtagtacctgtgaagggattttaacctgtctggcatagagtaagttgaataaatgtgagttttattGTGGTTAG--GCTGTGTCATTAGCCAAAAAAGTTTATTTTGATAAAGTAATTCTGGGAACTGGGGGGATGACAAATACACTTCCCCCCAGAAGATAAACATGTCATGTGGTCCACTGGGGAAGGGACTACCTGCTCGGCATACAGGTGACTAGGAGGCACCGTTTAGGTATCCTTCAGGGTGAGGA a score=11223.0 s hg17.chr7_random 41131 53 + 778964 GTAGCAGGGATTTGAAGGGAAATGAGAATATAACTGGGTGAAGATAACTGTCt s panTro1.chr6 161403253 53 + 161576975 GTAGCAGGGCTTTGAAGGGAAATGAGAATATAACTGGGTGAAGATAACTGTCt s canFam1.chr16 22869138 53 + 60307850 ACAGCAGGGTTTTGAAGGACAGTGAGAACATAACTATGTGGAGAAAACTGTCC a score=37346.0 s hg17.chr7_random 41184 404 + 778964 gttaggagaaaaaacttgggactgtaactcaccccccaactgggaatgagccgagagatcaaagaatgacaagaatggctcggatgagtccagcctgacgagtaggtgagtttactgggactcacacacagggcactcctggatggttgcaggacagctctagaggtcaccctacctcccaattccaagctgcttttaagctaatttgctgggtctctgcctgcagtgtgtgtgcaatggggctgttttccttgctttatgtccccacacacagcccaggatgttggggttctcagggacacctgcttctcagctgggtgccatggacttggccggctgctggaccttcagctttcagtgacatacacacttaagtaacctagtggggcacatgtcacaccaca s panTro1.chr6 161403306 403 + 161576975 gttaggagaaaaaa-ttgggactgtaactcaccccccaactgggaatgagccgagagatcaaagaatgacaagaatggctcggatgagtccagcctgacgagtaggtgagtttactgggactcacacacacggcactcctggatggctgcaggacagctctagaggtcaccccacctcccaattccaagctgcttttaagctaatttgctgggtctctgcctgcagtgtgtgtgcaatggggctgttttccttgctttatgtccccacacacagcccaggatgttggggttctcagggacacctgcttctcagctgggtgccatggacttggccggctgctggaccttcagctttcagtgacatacacgcttaaggaacctagtggggcacatgtcacaccaca a score=89581.0 s hg17.chr7_random 41588 510 + 778964 CTGCTTTGTG-TCATCATGTGTCAGCCCATTTCAGCTAGTGACAGCAGCCTTCACCTCTAGATCATTTTATGAAGTTTGTAAAATACAAATCTATACTGCAGGAAAAATGGGCC-CAAAAGGCATATTTAATATTTTAAGTAA--CTTATTTCCTGCCAATTTGGGGTAAAAATTTCAGTTGCTTTTCCTTAAGACTGGCTAACCCTAAACACTTCCTAAGGCACTCATTATTGGAT-TGCTAAGCAAATGGGTGTTCACCTGAAGAGAAGGAAAATTAATGAGGCTATAAAGTTTAATCATAATAAAGATCATGAAGTCTTGTTTCGTAGCTAAAGAAATTGCCATATCAAAATATTCT---ACATCTCACTTTGATGAAATTGAGTTCAAAATTTAGATTTGATAATGAA--AAATACGAAGCTAAAACTTATTTTTGTGTTGCCCTTGAGCTTACTCTGAAAACATGTAAGAGCAGAGAAGTCAGGAAATTTCTGTTGAGTTGAAAAAAACAACACT s panTro1.chr6 161403709 502 + 161576975 CTGCTTTGTG-TCATCATGTGTCAGCCCAT--------GTGACAGCAGCCTTCACCTCTAGATCATTTTATGAAGTTTGTAAAATACAAGTCTATACTGCAGGAGACATGGGCC-CAAAAGGCATATTTAATATTTTAAGTAA--CTTATTTCCTGCCAATTTGGGGTAAAAATTTCAGTTGCTTTTCCTTAAGACTGGTTAATCCTAAACACTTCCTAAGGCACTCATTATTGGAT-TGCTAAGCAAATGGGTGTTCACCTGAAGAGAAGGAAAATTAATGAGGCTATAAAGTTTAATCATAATAAAGATCATGAAGTCTTGTTTCGTAGCTAAAGAAGTTGCCATATCGAAATATTCT---ATGTCTCACTTTGATGAAATTGAGTTCAAAATTTAGATTTGATAATGAA--AAATACGAAGCTAAAACTTATTTTTGTGTTGCCGTTGAGCTTACTCTGAAAACATGTAAGAGCAGAGAAGTCAGGAAATTTCTGTTGAGTTGAAAAAAACAACACT s canFam1.chr16 22869191 496 + 60307850 -----CTGTGCTCAGCATGTGGTAACCAATTT----------CAGTCACTTTCACATCTAGG-CATTTTTTGGAGTTTGTAAAATAGAAA---ATACTGCAGGATAGTTGAGCCAAAAAAGGCACATTTAATATTTTAAATAACTCTTCTTTCCTGCCTATTTGGCAT-AAAATTTCAGTTGCTTTTCTTTAAGATTTGCTAATCCTAGAAACTTCCTAAGGCACTCATCATTGAATCCCCCAAGCAAATGGGGATTTACTTAAAGATAAGGAAACTAAGCAATCTTATGAAACTTAACAATAATGATAATAAT-ATGGCCTGTTTCTTAGCTAAAGGAATTGCCATATTTAGATATTCTACAACATCTCACTGTCATATCATAGAGTTC-AAATTTAGATTTGAGGATGAAGGAAAAATAAAGCTAAAACCAATTTATGTACTGTTCTTGTGTTTACTCTGAAAAAA-AAAAAAACAGAGAAGG-GGGAGATTTCTGTTGagctgaaaaaaataacatt a score=88155.0 s hg17.chr7_random 42098 470 + 778964 TTTGCTGATGTGAAAACTGTATGGCTGAACCAGAAAATAAAGAT-ATTAACATAAATCCAATAAGGCAAGTTGTCTTACTAT-----TTTGTTTTGTTAACCCAGGACCTCTTGTTCTCTAATTGTTTAAAGGAAATAACTCATAAAGTCTGACTCAAGCTAGCATTGGTGAGATCAGAGAGCTCAGTAAAAATTCCACACTTCCATGCTGCAGGCAATGAAGATGTCGCTGGAAGGGTGAGACCACCCAAGGCATCTCTTTGGCAATGAACT-CATCCTTAAAGCAGACACGCTCTGACCACCAGTGAATTTTCCCTTCAGTAAAAATAGAGTCATATTTAGCTGGAAAGGTAGAAGAAAAGTAGGAGTCTATCTATATTTAAACCATATGGTCTGAAGTGAAATGAGAACAAATCTCCTGACAGATTGATGTTAGGAAAATTGAATGAAACACAAGTGCTTTTCAGCAGATCTAA s panTro1.chr6 161404211 470 + 161576975 TTTGCTGATGTGAAAACTGTATGCCTGAACCAGAAAATAAAGAT-ATTAACATAAATCCAATAAGGCAAGTTGTCTTACTAT-----TTTGTTTTGTTAACCCAGGACCTCTTGTTCTCTAATTGTTTAAAGGAAATAACTCATAAAGTCTGACTCAAGCTAGCATTGGTGAGATCAGAGAGCTCAGTAAAAATTCCACACTTCCATGCTGCAGGCGATGAAGATGTCGATGGAAGGGTGAGACCACCCAAGGCATCTCTTTGGCAATGAACT-CATCCTTAAAGCAGACACGCTCTGACCAGCAGTGAATTTTCCCTTCAGTAAAAATAGAATCATATTTAGCTGGAAAGGTAGAAGAAAAGTAGGAGTCTATCTATATTTAAACCATATGGTCTGAAGTGAAATGAGAACAAATCTCCTGAGAGATTGATGTTAGGAAAATTGAATGAAACACAAGTGCTTTTCAGCAGATCTAA s canFam1.chr16 22869818 452 + 60307850 TTTGCTGAAAGGAAAAC--TATGGTTAAAATGGAAAATAGACATGGTTAACATAAACTCAATGAAGCAAGGGGTCCTAATATGATACTTTGTTTTGTTAACCCAGGCCCTCTTGTTCTCCAATTGTTTAGAAGAAATAGCCCGTGAAGTCTCA---AATACAGCA-----------GGAAAGCACAAAAAAAA--AAACCCTTTCA-----CAGGAGCTAAAGACTTTGGTTGAA-GGTGAGACCACCCAAGAAATCTCTTTGGCAATGAACTCCATCTTTAGAACAGACAAACTCTGGTCACCAGTAAATTTTCACTTGAATTACAA-AGAATTATATTCAGATGGAAATGTAGAAGAGAACCAGAACTCTGTCTATATTTAAATCACATGGTCTGAAGTGAAATGAGAACAGACCTCCTGACAGATCTATGTTAGGAAAGTAGAATGAAATACAAGGGCTTTTCAGCTAACCAAA a score=1786.0 s hg17.chr7_random 42568 19 + 778964 TTCAGAAG--GAGGTTACTTG s panTro1.chr6 161404681 19 + 161576975 TTCAGAAG--GAGGTTACTTG s mm5.chr7 36303525 21 - 133051633 TTCAGATGCAGCGGTTGCTGG s canFam1.chr16 22870270 16 + 60307850 TTCAGGAGATGCATCT----- a score=25845.0 s hg17.chr7_random 42587 45 + 778964 GAGTTGTAACACAGATTCTGACTCTCCTTTCAGTGCCAGGTTCAC s panTro1.chr6 161404700 45 + 161576975 GAGTTGTAACACAGATTCTGACTCTCCTTTCAGTGCCAGGTTCAC s mm5.chr7 36303550 45 - 133051633 GAGATGTAACACAGATCCTGGCTCTCCTTGGAGTATCAGATTCAC s rn3.chr1 100940320 45 - 268121971 GAGTTGTAACACAGATCCTGGCTCTCCTTGGAGTATCAGATTCAC s canFam1.chr16 22870286 45 + 60307850 GGGCTGTAATTCAGACTCTGGCATTCTCTCCAGCATTGTTTATAC a score=100.0 s hg17.chr7_random 42632 1 + 778964 C s canFam1.chr16 22870331 1 + 60307850 C a score=300.0 s hg17.chr7_random 42632 1 + 778964 C s panTro1.chr6 161404745 1 + 161576975 C s mm5.chr7 36303595 1 - 133051633 C a score=20533.0 s hg17.chr7_random 42633 110 + 778964 GACATCTTCTGACATTTCTCCTCCTAAGTTG-CATTCTGTGCGTAGGGGTTGTCCAAGTTGCTCTCCTCTAAAAAGGGGTTCCAAGAGGAACACATTGAGCAATAATTTAT s panTro1.chr6 161404746 110 + 161576975 GACATCTTCTGACATTTCTCCTCCTAAGTTG-CATTCTGTGCGTAGGGGTTGTCCAAGTTGCTCTCCTCTAAAAAGGGGTTCCAAGAGGAACACATTGAGCAATAATTTAT s canFam1.chr16 22870332 110 + 60307850 TGTATCTTCCAACGTTTCTCCTTCTTTGTTGATATGCTCTGGGTAGAGG-CATTCAGGTCGCCGTCCTCTGGAAAAGGGTTCTAAGAGGAACACATTGAGCAAATATTGAT a score=9740.0 s hg17.chr7_random 42743 47 + 778964 TTTTGAAATAGGAGTTTCATAAAGGTTTCCTTTGCTTTTGAGTTTTT s panTro1.chr6 161404856 47 + 161576975 TTTTGAAATAGGAGTTTCATAAAGGTTTCGTTTGCTTTTGAGTTTTT s canFam1.chr16 22870618 47 + 60307850 TTTTGCAATAAGATTTTCCTATAGTTCTCATTTGCTTTTGAATTTTT a score=28626.0 s hg17.chr7_random 42790 319 + 778964 AAAAGCATAGCTGggctgggcatggtggctcacgcctgtaattccagcactttgggaggccaaggcaggcagatcacctgagttcgggagtttgagaccagcctggccaacatggagaaaccctgtctctattaaaaaaaaaaaatagaaaattagcctggtgtggtggcacatgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttaaacctgggaggcggaggttgcagtgagccaagattgagccattgcactccagcctgggcaacaagagcaaaactccatctg---------aaaaaaaaaaaaaaaaa s panTro1.chr6 161404903 324 + 161576975 AAAAGCATAGCTGggctgggcgtggtggctcacgcctgtaattccagcactttgggaggccaaggcaggcagatcacctgagttcgggagtttgagaccagcctggctaacatggagaaaccctgtctctatt----aaaaaaaatagaaaattagcctggtgtggtggcacatgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttaaacctgggaggcggaggttgcagtgagccaagattgagccattgcactccagcctgggcaacaagagcaaaactccatctgaaaaaaaaaaaaaaaaaaaaaaaaaa a score=40605.0 s hg17.chr7_random 43109 256 + 778964 GCATAGCTGATTCAGACTTAAACTGCTATTTGCTACCTGTGCTAACCTACTCCTACTCCAACTTATTGGCAGTGGAAACCATTGAAGAGATCAACAGATATCAAACTTGAAAGAGTACCTTTTTTATAGTTATTT-------TCACATTTTTAGAATTTTCATAAGGGTTAAGAGTTTACAGGACTTACAGGTGGCTGGCTCATTGAGTCCTCCAAAGAACTACAGAAGATTAAGAGTCCTCAGC-TTCAGTAGGAGATCTTGA s panTro1.chr6 161405227 256 + 161576975 GCATAGCTGATTCAGACTTAAACTGCTATTTGCTACCTGTGCTAACCTACTCCTACTCCAACTTATTGGCAGTGGAAACCATTGAAGAGATCAACAGATATCAAACTTGAAAGAGTACCTTTTTAATAGTTATTT-------TCACATTTTTAGAATTTTCATAAGGGTTAAGAGTTTACAGGACTTATAGGTGGCTGGCTCATTGAGTCCTCCAAAGAACTACAGAAGATTAAGAGTCCTCAGC-TTCAGTAGGAGATCTTGA s canFam1.chr16 22870669 247 + 60307850 GCATAGCTGATTTAGACCTGAA-TACTATTTATTATCTGTACTA------CACTATTCCATCTTATGAGTAATGGAGACCAT----------GAAACATACCAAACTCAAAAGAGAGCTATTGTTCCGATTGTTTTCACTTCTCACATTTTTACAATTCTTACAGGGGCTATACACTCACGGGATTTACAGTTGACTAATTAGTTGAGTCTCTCAGAGGACTAGGGAGGTTGGAATGTCCTCTGAGTTCATCAGGTCATCTTGA a score=71206.0 s hg17.chr7_random 43365 459 + 778964 CTTATCCCATAACCTCCCCGTTTCCTCTAGGGCCTTCTCCATTTATTTACCCTTTTCTCTTAAGATGTCAACATTTCTTTCTCTGTTAGCTCTTTACCATAGGGTGGTACCATGCCCAAATCTTTCACATTCCAGGAGGGAAAAA--AACA-AATAAATGTAAATGTAAAACATTCTCAAATGCACTCTCAACCTAAATGCTTAGCTCTCTCTGTAGCATCCCAGCAAAGCTTTCTGAAGAGCAAATGAGGCTCACTGCCTTCTCTTCCTCGTCAGACATCCGCTTCTCCCCCCACTGCAGTTCTGCTGACCTCTTTGACATGCCACGAAAACCGTGTGGACAAGGTCCACTGTGGACTCCGGGTTGTCCAATTGCGAGGGTCAGCCTTGGTCAGCCTGGCTTCTCGGTGGCGTTTTAT---GGGGCCAGCCCTGCTCGAGGCTCTCCTGTGTTGGCTTCTTTTG s panTro1.chr6 161405483 459 + 161576975 CTTATCCCATAACCTCCCCGTTTCCTCTAGGGCCTTCTCCATTTATTTACCCTTTTCTCTTAAGATGTCAACATTTCTTTCTCTGTTAGCTCTTTACCATAGGGTGGTACCATGCCCAAATCTTTCACATTCCAGGAGGGAAAAA--AACA-AATAAATGTAAATGTAAAACATTCTCAAATGCACTCTCAACCTAAATGCTTAGCTCTCTCTGTAGCATCCCAGCAAAGCTTTCTGAAGAGCAAATGAGGCTCACTGCCTTCTCTTCCTCGTCAGACATCCGCTTCTCCCCCCACTGCAGTTCTGCCGACCTCTTTGACATGCCACGAAAACCGTGTGGACAAGGTCCACTGTGGACTCCGGGTTGTCCAATTGCGAGGGTCAGCCTTGGTCAGCCTGGCCTCTCGGTGGCGTTTTAT---GGGGCCAGCCCTGCTCGAGGCTCTCCTGTGTTGGCTTCTTTTG s canFam1.chr16 22871129 427 + 60307850 TTTAGCCCATGACCTTCCC--TCCCTATAGGGATCTCTTC--TGTTTTGCCCTTCTCTCTGGAGACTTCAATATTGCTTCCTCTGTTAGCTCTTTATCTTAGGCTGTTAATGTGCTTAAATCCTTTATATCCTAGGAGGAATAAAGTAACAGAACAAATG--AGTGTAAAACATTCTCAGATATACTCTAAAC------------CTTTCTCCTTAGTCTCTCAGTAAGGCTTT-TAAAGAAGAACCAGAGTTCACTGTCTTCTC-ACCTCACCACTCATGCCCTTCCCTGCCCAGGGAAG--------------CTAGCAAGCTATG-AAACCGCCAGCACAA--CCCAC-ATGACCTCCACACTGCCCAGTGCCCATGGTCAGTCTTGGTTAATTTGATTTCTTAGGCACCTTTGGCATGGGGGCCAGCACTGCTAAAGGCTCCCCTCTCTTGGTTTTATTTG a score=8108.0 s hg17.chr7_random 43824 92 + 778964 C----CACCCTTGGTTCCTCCTCTTTGCCTTGGGCCAGTTTACTTGATCACATTTTATGTGGCCTGTTTTCCCTCTATCTCCTAAACTGTCAATGT s panTro1.chr6 161405942 96 + 161576975 CCATTCACCCTTGGTTCCCCCTCTTTGCCTTGGGCCAGTTTACTTGATCACATTTTATGTGGCCTGTTTTCCCTCTATCTCCTAAACTGTCAATGT a score=95561.0 s hg17.chr7_random 43916 708 + 778964 TTCTGGAGTTCCCTCTTCT--CTTTATTCTAAACTAGTT-CACTATACATTCCTTTTACCCGTGTTTCTTTGAAACATATAAACATTTTATTTTGGCACTATCATGCTATAATAGGATGGTTGTTTTCCTGTCTGTTTTCCCCCAAATCGAGTCATTTGATGGGAACTATTTGGAGGAAGGT--TGTGTCATGGCTCTGGGTCTTCAGTGGCAACTCAGGACCTTCCCTGTACATAGGTAGGTGCTCACTAAGAACTGGTTGGCCTGAGAATAAGTTTTATGCACTCCTGTGACTGCAGTGACCATTTATAACTCAGTGACTTTGGACTCTG-AGCTGGGCTCATATCTTTCAGCTGAACT-----------CCCGCCTGTGTCTGAcagaggcactgtgtgtaatagtgattgagagcgcaggctctggagctcagcag--tgtgttcaca-ttcagttctgccCCGACACATTGCCCATCCTCATCAGCCTCTCCATCCACAAAGCAGAGACGATAACAT--ACCTGCGACACGA------CGAAGGTGATGCACACACCACACCAGGCAGAGACCGCATGTGACCTATGACTGCTG-CTATTTGTACATTCGCCAGCATGATCCAGTTCTACCCCATTCAAAACTCAATGTGCAAGTGGATTCCCTGCCTTTGTTACCAGCACCACAGCCTGGAGGTCACTTGAACCAGAAAACTGGAGTTGTCCCAGCTCCAT s panTro1.chr6 161406038 708 + 161576975 TTCTGGAGTTCCCTCTTCT--CTTTATTCTAAACTAGTT-CACTATACATTCCTTTTACCCGTGTTTCTTTGAAACATATAAACATTTTATTTTGGCACTATCATGCTATAATAGGATGGTTGTTTTCCTGTCTGTTTTCCCCCAAATCAAGTCATTCGATGGGAACTATTTGGAGGAAGGT--TGTGTCACGGCTCTGGGTCTTCAGTGGCAACTCAGGACCTTCCCTGTACATAGGCAGGTGCTCACTAAGAACTGGTTGGCCTGAGAATAAGTTTTATGCACTCCTGTGACTGCAGTGACCGTTTATAACTCAGTGACTTTGGACTCTG-AGCTGGGCTCATATCTTTCACCTAAACT-----------CCCACCTGTGTCTGACAGAGGCACTGTGTGTAatagtgattgagagcgcaggctctggagctcagcag--tgtgttcaca-ttcagttctgccCGGACACATTGCCCATCCTCACCAGCCTCTCCATCCACAAAGCAGAGACGATAACAT--ACCTGCGACACGA------CGAAGGTGATGCACACACCGCACCAGGCAGAGACCGCATGTGACCTATGACTGCTG-CTATTTGTACATTCGCCAGCATGATCCAGTTCTACCCCATTCAAAACTCAATGTGCAAGTGGATTCCCTGCCTTTGTTACCAGCACCACAGCCTGGAGGTCACTTGAGCCAGAAAACTGGAGTTGTCCCAGCTCCAT s canFam1.chr16 22871892 651 + 60307850 TTCCAGGGTTCCCTCCTCTTCTCTTAGTCTGAACTAGTTCCATAACACATCTCTTCC-TCTGTGCTTCTTTGAGTCATATGTGTATTTCATTATAATGCTATCATACTACAGTATGA--------TTCCCACC----CCCCCCCAAA--AAATCCTTTGATTTGAGTTACTTGAGAGGAGGTACTGTGTCACGTCTTCAGGTCTCCAGTGGTAGCTCAGGACCT-----------------------------GGTTGCCTGGCCTGAGAATGCATTTTAAGCAGTCctatgatt------------------ttggtgacttccaaacctacatctcagcccacactcctcacctgaacttcagaccagcacccagctgtttGGCAGAGAGGTGATATGTGTCA---TGATCAGGACCAGACACTCTGAAGCCCACTAACTTGTGTTCAGACTTGAGCTCTCCTTGGATATACCACCTATGCTTCCCAGTCATTTGATCTGAACAACTGTGACAGTAACAGCACCCAGTGAAAGGATGGCTGTGGAGATGATGTGTACAACACAC-------ATACTGAGTGTAATCTATTACTTGTGATTGCTTTTATTCTCATGGGAATATTCCAGCCCTAACTTACCCAAAACTGAATTCACAAACTGATCTCTCATCCATGTTAGTAGCACCACAATCTGGGAGCTGCTTGAACAA--------------TCACAAATCCAT a score=63659.0 s hg17.chr7_random 44624 385 + 778964 CTCTCCGAAAATTCTTTAATACAAAAT-CACTAGTGTAAGGTAACTTGGACTGTATTTCATGGCTTTGATCAGGCCTTGGGTAACTTCAGTTCTTAGAATAATTAGATATTAATCAGCTTCACTCCTTGTCTATATGTTTTCAACAAATATAATCCAGTCATTTTGGCCTATTTT-CAGGGCCTCTCCAATCGTACACCAGCCA-----GCTCTTGTAGTCCCATTTCTGATTATTGTTCCCCAGAGCCCTTTCATTGGTTCCACCAGTTTTGTCAGCTACCTGGTCATGAACTTGCCTTTAGTTTT-CTAAACCTCTGCTCATTGCTACAATCATTCCTTTTTTGCTTATGCATATCCTATCAATCTTTCAAGGTGAGACTCAAATTCTTCC s panTro1.chr6 161406746 385 + 161576975 CTCTCCGAAAATTCTTTAATACAAAAT-CACTAGTGTAAGGTAACTTGGACTGTATTTCATGGCTTTGATCAGTCCTTGGGTAACTTCAGTTCTTAGAATAATTAGATATTAATCAGCTTCACTCCTTGTCTATATGTTTTCAACAAATATAATCCAGTCATTTTGGCCTATTTT-CAGGGCCTCTCCAATCGTACACCAGCCA-----GCTCTTGTAGTCCCATTTCTGATTATTCTTCCCCAGAGCCCTTTCGTTGGTTCCACCAGTTTTGTCAGCTACCTGGTCATGAACTTGCCTTTAGTTTT-CTAAACCTCTGCTCATTGCTACAATCATTCCTTTTTTGCTTATGCATATCCTATCAATCTTTCAAGGTGAGACTCAAATTCTTCC s canFam1.chr16 22874834 381 + 60307850 CTCTTGACAAGCTTGTTAATACAGAGTGCACTAGAATAATTTGACTTAGGCTATAATTTATGCCTTACATTGGTCCTTGAATAACTTTAATTCTCAGAATAATTAAATATTTATCAG-TTCAGTCTTTG----TAAGTTTTCAACAAATAGAATCTAGTCATTTTGGCTTGTTTTCCAAGACCTTTCTGATCACATACCTATCACAAACAGTCTCATAGTCACAATTCC--CCACTATTCACCAGAGTGCTATTTTTG---CTGCCAGCTTGGTCAGCGACCTGGTCATAAATATATCTTTAATTTTGTTTTACATCTGTTTATTGATGTATTCGTT-CTTTTTTGCATTTGTAAACCCAATCTAGGTTTC-TGGTACAACTTAAATTCTTCC a score=225652.0 s hg17.chr7_random 45009 2477 + 778964 tctctttattcagtctatctttgatagacatttaggttgattccatgtctttgctattgggaattgtgctgtagtgaacaattagctgggtgtagtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccaggagatggaggttgcagtgaactgaaatcgtgccactgcactccagcctgggcaacagggcgagactccatctcaaaaacaaaaacaaaaacaaaaacaaaaaaACACACAAcaaaaaaacagatgaggttctggagag-aaaataatgcttatacattgttggtgggagtgtaaattagttcaaccaatgtggaagacagcgtggtgtttcctcaaagacctaaagacagaaataccatctgacccagcaatcacgttactgggtatatacctaaaggaatttaaattgttctattataaagacacatgcatgcagatacaccatagaatactatgcagccataaaaaagaatgagatgttctctccagggacatggatggagcaaactaatacagaaacagaaaaccaaatatcccatgttctcctttataagtgggagcttaatgatgagaacacatggacacgtacaggagaacaacacacactggggcttctcggagggtggagagtgaaaagagggagagaatcaggaaaaataactcatgggtattaggcttaatacctgggtgatgaactaatttgtaaaaccccatgacacaagtttacctatgtaacaaccctgcacatgtacccctgaacttaaataaaagtttttaaaaaggaaaGAAAAACCCTTAAAATAtttgtatttgtctttggttttcagcagtttaattgtaatatattgagatgcaatttgtttgtttttagtttatcctagttggagttcactgaacttcttcagtgtgcaagtttatgtgtctaaccaagtttgaaacacaagctttaaggtttcagtcataattttctataatttttcttcttcaccaatctctttcttttctcctttcaagactccaatcgctttgacattatactttttgatattgtccaacagctacatcaggcatttataatttttaaatatattttttctgtctgtggataaattctgttgctctatcttcaagttcactgcccttttcctttgttatttccattctcctattgagcctatccaataag---gttttttattaatatgattattgttatttttattattgttatttcaaattttgtagttttcagttctaaaatatccagttggttctttctcatagtttctatctctctgctatgaatttccatactttcatcatttcaaaagtgttcatttttactgcatagagcatgtttacaacagctgcctctgagtctctcttataattccaacatctgagtcatcttaggggtggcatatgttgattatcaattccattgagaatttggcatatttttggttcctactatgttgagtaattttgaattgtatccttagcatatagcctattctgttttgagagtatgggttctgtcacatcctctgcagatgttgacattttgttttatcaggcaatcaacttagttaagtttagactaaaaattcaatctcactttatataggtggtaattacaatatcagctcaattgtcaaagcttttgctatgcttattAGGTGTGCATATGAAATgttttcataaatagtattttcattatttttcagttcctaatgtattctaatttctcttttgatttgttttgatccatcacttatttaaaagtg-tttttacctgttatcacagatattttgagaAATATACAAAAGGAGAGAAAATAGAACAGAAAGCCACCATACACCTTTCTTGCAAACATAACCACAATTACATATTACACATTAAAAATTAAAGTGATTCATTAAAATAAAGTATCCAGTTAGTGCagaagtagatttcttaatttataaagggattttctaattatgtctttttttattttacctaatttagttgaattgtgatcaaaaaatatttgatacaatttcagcccttaaagtctgttctgacatgctttgtgactcaatagatataatttttcggttactgtttcttgtgtactcaaaaaatatatattttgatgttttggggactatttttccatcatgttaattacttcaaatttatttaactgtatcctgatatgtttaaattgcttgttctatcagttagtgagacagagagctagcttgcattcttttcatcatgtggaagatacaatgagaagtcagcatctcaagtctgcaacccgaaagagaaccctcatcagaacccaacaatgctggaacccagatcttgaactttcagcctccagaactgtgagaaataaatttctgtcgttgataagtgaactagtccatggtatgttgttatagcagcccaaactg s panTro1.chr6 161407131 2473 + 161576975 tctctttattcagtctatctttgatagacatttaggttgattccatgtctttgctattgggaattgtgctgtagtgaacaattagctgggtgtagtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccaggagatggaggttgcagtgaactgaaatcgtgccactgcactccagcctgggcaacagggcgagactccgtct------caaaaacaaaaacaaaaacaaaaaaaCACACAAcaaaaaaacagatgaggttatggagagaaaaataatgcttatacattgttggtgggagtgtaaattagttcaaccaatgtggaagacagcatggtgtttcctcaaagacctaaagacagaaataccatctgacccagcaatcacgttactgggtatatacctaaaggaatttaaattgttctattataaagacacatgcatgcagatacaccatagaatactatgcagccataaaaaagaataagatgttctctccagggacatggatgcagcaaactaatacagaaacagaaaaccaaatatcccatattctcctttataagtgggagcttaatgatgagaacacatggacacgtacaggggaacaacacacactggggcttctcggagggtggagagtgagaagagggagagaatcaggaaaaataactcatgggtattaggcttaatacctgggtgatgaactaatctgtaaaaccccatgacacaagtttacctatgtaacaaccctgcacatgtacccctgaacttaaataaaagtttttaaaaaggaaaaAAAAACCCTTAAAATAtttgtatttgtctttggttttcagcagtttaattgtaatatattgagatgcaatttgtttgtttttagtttatcctagttggagttcactgaacttcttcagtgtgcaagtttatgtgtctaaccaagtttgaaacacaagctttaaggtttcagtcataattttctctaatttttcttcttcaccaatctctttcttttctcctttcaagactccaatcgctttgacattatactttttgatattgtccaacagctacatcaggcatttataatttttaaatatattttttctgtctgtggataaattctgttgctctatcttcaagttcactgcccttttcctttgttatttccattctcctattgagcctatccaataaggttgttttttattaatatgattattgttatttttattattgttatttcaaattttgtagttttcagttctgaaatatccagttggttctttctcatagtttctatctctctgctatgaatttccatactttcatcatttcaaaagtgttcatttttactgcatagagcatatttacaacagctgcctctgagtctctcttataattccaacatctgagtcatcttaggggtggcatatgttgattatcaattccattgagaatttgacatatttttggttcctactatgttgagtaattttgaatggtatccttagcatatagcctattctgttttgagagtatgggttctgtcacatcctctgcagatgttgacattttgttttatcaggcaatcaacttagttaagtttagactaaaaattcaatctcactttatataggtggtaattacaatatcagctcaattgtcaaagcttttgctatgcttattAGGTGTGCATATGAAATgttttcataaatagtattttcattatttttcagttcctaacgtattctaatttctcttttgatttgttttgatccatcacttattt--aagtgttttttacctgttatcacagatattttgagaAATATACAAAAGGAGAGAAAATAGAACAGAAAGCCACCATACACCTTTCTTGCAAACATAACCACAATTACATATTACACATTAAAAATTAAAGTGATTCACTAAAATAAAGTATCCAGTTAGTGCagaagtagatttcttaatttataaagggattttctaattatgtctttttttattttacctaatttagttgaattgtgat-aaaaaaaatttaatacaatttcagcccttaaagtctgttctgacatgctttgtgactcaatagatataattttttggttactgtttcttgtgtactcaaaaaatatatattttgatgttttggggactatttttccattatgttaattacttcaaatttatttaactgtatcctgatatgtttaaattgcttgttctatcaggtagtgagacagagagctagcttgcattcttttcatcatgtggaagatacaatgagaagtcagtatctcaagtctgcaacctgaaagagaaccctcatcagaacccaacaatgctggaacccagatcttgaactttcagcctccagaactgtgagaaataaatttctgtcgttgataagtgaaccagtccatggtatgttgttatagcagcccaaactg a score=27484.0 s hg17.chr7_random 47486 175 + 778964 actaagataCTATTTTTATCATGTACGtctattttaaacctctcca--------gacattgttgttgttgttgttatataaagttcaccattatttggatctaccacaaa----cactcgtttcattattacttatttcttcctggatttctaagattctatcatccagtatcactgtcctctggct s panTro1.chr6 161409604 174 + 161576975 actaagataCTATTTTTGTCATGTACGTCTATTTTAAACCTCTCCA--------GATGTTGTTGTTGTTGTTGTTATATAAAGTTCACCATTATttggatctaccacaaa----cactcgtttcattattacttatttctccctggatttctaagattctatcat-cagtatcactgtcctctggct s canFam1.chr16 37426944 181 - 60307850 attaatataatatttatattGTAGA----TATTTTAAACTCCCCCAGGATTATTGGTATTGCCATTGTTACTATTTTTAAAAGTCCATGTTCATTCAGAATTACCATACATATTCACTGGTTTCGTTATTCCTTTTTCCTCCATGAATTTCTGAGCCTCTGTCATCCAGTATCATTGT--TCTGGAT a score=27725.0 s hg17.chr7_random 47661 210 + 778964 taaagtatttaagcagaatttatgtgttttctttagcaaagtagcccttcttgtgacaaattctctcagttttatttgtcaaagacgttttaatgtttgaatttcctca----------------------------------------------tcaat----------------------------------------------------------------------------------------gaagattttcactaga-tataaaatttcatgttgt--tcttatttcttatagcaattagagatatcattctattttcttctg---tttttttcctaaaaaat s panTro1.chr6 161409778 210 + 161576975 taaagtatttaagcagaatttatgtgttttctttagcaaagtagcccttcttgtgacaaattctctcagttttatttgtcaaagatgttttaatgtttgaatttcctta----------------------------------------------tcaat----------------------------------------------------------------------------------------gaagattttcactaga-tgtaaaatttcatgttgt--tcttatttcttatagcatttagcaatatcattctattttcttctg---tttttttcctaaaaaat s canFam1.chr16 37430001 344 - 60307850 taaaatatttaaGTAGACTTTACTTATTTCCTTTAGAGAACTAGCCTTTCTTGTGACAACATTTCTCACCTTTGCTTGTCAAAAACattttaatttttttatatcattattttttCTGTGGGGCGGGACTGGACACAACGGTCTAGCTCCGGCGGTCAATTGCTCCAGCGGCCAGCCTCCCTGTCCCTACCCCCACCAACATGGTGCCAGGGGGCCCATTTTAATTtttttatatcattattattgaagaatattttcactggagtattaaattctaacttggcattttaatttttttagcatttag------cattctagTTTCTTCTAGACTCTTCTTCCTGGAAGGT a score=1413.0 s hg17.chr7_random 47871 22 + 778964 atcctggtttttttttcctgta s panTro1.chr6 161409988 21 + 161576975 accctggttttttttt-ctgta a score=29677.0 s hg17.chr7_random 47893 166 + 778964 aaatatcttctaattatggctttatttaataattgtcttttccttttccccacttgagagattttctctttattattactttcagcaagttatactacggtgtgttttaatgtgactttgaatttattttgtttggggtccatagtgactcttgaatctgatattt s panTro1.chr6 161410009 166 + 161576975 aaatatcttctaattatggctttatttaataattgtcttttccttttccccacttgagagattttctctttattattactttcagcaagttatactatggtgtgttttaatgtgactttgaatttattttgtttggggtccatagtgactcttgaatctgatattt s canFam1.chr16 37430527 153 - 60307850 cAGTATCttttaattattatttcatttaataattgtctttctctttg-gctgcttgaaagtttttctctttgtcataatgtttggaaggttatac-atgatgtgtttaagggcg-----------gttttgtttgggattCCTAGTGACTCTTGAATGTGAGATTT a score=284859.0 s hg17.chr7_random 48059 1712 + 778964 aatgtctttt-acattttc---aatt-----cactattttttcaaacagtttttctgccttattctctcttccc---tgtcctgcaattacagttgtagccatgccatactttttcactatatccactatgcctcttaatctctttttactctattcc--------ttttgttcattctttgttctgtacatttttttctgaactatcttccaattccactaattgtctttttagctctgtctaaattgcttttaaccttatccactgagttcctagttccatttattttacctttcagttctagaatt----ttttttccttgtatcttatctcaatttatctgtcaaaattttcAGTCTTGTCTTTTATTGCCT--TTTGTATTAAAAATGTTTATTATAAAGTATTTTCTGATATTTTCACTGATCTTGTAGATCTGTTTCTATTGTCTATTATT-TAATTTTTCAAATCACATATCT--CCTTGAGAGAAGGGATTTT--TAAATTTAGGAATGTATATTTTATATGAAAAGCATACAGGAGTG-----TTTAAGGCCTAGGATGATGGTATATTTCTTCAGAGATAATTTATGTTTATTTTTAACAGACAGCTAGGTTAATAGG-ATTAGCAATCCCAGATCACCTTAATTCAACCCTGAAGGTTGAGAGGATTTTAATCTGGCTTTAGCCTTTGCAAGGGCTGGTCTATTTCTGCATCATCCTTTAT----------------GTTAAGCAAGTCACTTATTTTCTTGGCAGGCCCTAGGTTCCAGTTTTCATCCCAGAGGGATGAACAAAGGCTCATCACCAGAACAAAGGTTCTGCTAAGCTTCCCCATCTCTCATTTGTCTTTGCCTTTCCAGGAGTCAGAAAGCATCTCTGTAGATAAGCATCCCTGGG------------------------TTTCTTTATTTTCCTGGATCTTGGCTCCATATCCTTGGTGTCTCTCTGAGACCTTCAAGTAAACCTTTTTTTCTTTGTCCAGATTTTCTAATTGTTCTCATGAGA------CAAATTACCTAA-TTACCACTAACAAAAGTGGAATTCCCCCAAAATAACTTTTAGATTTAACTCAGGAAGCTTCTAAATGCATTACATGCTGATTGTATTTGATAAAAATATTGTGCACTCACCACATTGCAGTGGGGAAAAAAGAAAATAGATCTTGCCCTTTGTGACAGAAATGGCCAACCTTCCTTTTCCCTTCATTTTcagaaattgg--ttttgtttcaatgtgttttgtttttttactgggcatatggtcatctaagatatagccttatttttcaacctctt-ttatagctaggtgtggcaaagtaaggtctggccaatgggatgtacgggcaatttcaagg-agcatccttaaaaagaagagcatatctttcctcatttcttctgtcatatttctttctggaatggagacatgatggctggattccagctccttatagccaccttggaccatgag--gatcttggcaatggaagccctgcatgacaatacaacaaaatg-tgagggcctggctcccggacgctatgaatcattataccaatgt------------------------tgggatattatagagaaatgaaggtctatcttgtttaagcctctacttttttctgttacttggggccaaaATATCCCCAAATTGTTTATAAAGATGACACATGCATTAATTTAAAGGCTACCTAACACTTGACAACACTTGGTAAGTGCCAAATGAATGACATAAATCATATGTA-------------------GCAGGCAGATTCCTGTAAGTTCCT s panTro1.chr6 161410175 1712 + 161576975 aatgtctttt-acattttc---aatt-----cactattttttcaaacagtttttctgccttattctctcttccc---tgtcctgcaattacagttgtagccatgccatactttttcactatatccactatgcctcttaatctctttttactctattcc--------ctttgttcattctttgttctgtacatttttttctgaactatcttccaattccactaattgtctttttagctctgtctaaattgcttttaaccttatccactgagttcctagttccatttattttacctttcagttctagaatt----ttttttccttgtatcttatctcaatttatctgtcaaaattttcagtcttgtcttttattgcct--tttgtattaaaaatgtttattataaagtattttctgatattttcactgatcttgtggatctgtttctattgtctattatT-TAATTTGTCAAATCACATATCT--CCTTGAGAGAAGGGATTTT--TAAATTTAGGAATGTATATTTTATATGAAAAGCATACAGGAGTG-----TTTAAGGCCTAGGATGATGGTATATTTCTTCAGAGATAATTTATGTTTATTTTTAACAGACAGCTAGGTTAATAGG-ATTAGCAATCCCAGATCACCTTAATTCAACCCTGAAGGTTGAGAGGATTTTAATCTGGCTTTAGCCTTTGCAAGGGCAGGTCTATTTCTGCATCATCCTTTAT----------------GTTAAGCAAGTCACTTATTTTCTTGGCAGGCCCTAGGTTCCAGTTTTCATCCCAGAGGGATGAACAAAGGCTTATCACCAGAACAAAGGTTCTGCTAAGCTTCCCCATCTCTCATTTGTCTTTGCCTTTCCAGGAGTCAGAAAGCATCTCTGTAGATAAGCATCCCTGGG------------------------CTTCTTTATTTTCCTAGATCTTGGCTCCATATCCTTGGTGTCTCTCTGAGACCTTCAAGTAAACCTTTTTTTCTTTGTCCAGATTTTCTAATTGTTCTCATGAGA------CAAATTACCTAA-TTACCACTAACAAAAGTGGAATTCCCCCAAAATAACTTTTAGATTTAACTCAGGAAGCTTCTAAATGCATTACATGCTGATTGTATTTGATAAAAATATTGTGCACTCACCACATTGCAGTGGGGAAAAAAGAAAATAGATCTTGCCCTTTGTGACAGAAATGGCCAACATTCCTTTTCCCTTCATTTTcagaaattgg--ttttgtttcaatgtgttttgtttttttactgggcatatggtcatctaagatatagccttatttttcaacctctt-ttatagctaggtgtggcaaagtaaggtctggccaatgggatgtatgggcaatttcaagg-agcgtccttaaaaagaagagcatatctttcctcatttcttctgtcatatttctttctggaatggagacatgatggctggactccagctccttatagccaccttggacaatgag--gatcttggcaatggaagccctgcatgacaatacaacaaaatg-tgagggcctggctcccggacgctatgaatcattataccaacgt------------------------tgggatattatagagaaataaaggtctatcttgtttaagcctctacttttttctgttacttggggccaaaATATCCCCAAATTGTTTATAAAGATGACACATGCATTAATTTAAAGGCTACCTAACACTTGACAACACTTGGTAAGTGCCAAATGAATGACATAAATCATATGTA-------------------GCAGGCAGAGTCCTGTAAGTTCCT s canFam1.chr16 37430872 1745 - 60307850 aatgtctttcaacatattcaaaaattctcagcaatagttcttcagatattgtttctgcttcattctctttcccttcatcttctaagattataattatagccacaatggg-tttatcattatttcttctatgcttctta--ctctttcttctacattccacctcttattttcttcattgtttattctgtaaattttcttctgaaatatcttctaattccactaa-tgtctccttagctctgtcc------ctattaatctcaaccattgagttctgagttttggttatggcatttttcagttcctcaatgtccatttggttcttatgtcttatttccatttctctgccaaaa-tgtcactcttgtcttttattatcttctttttattaaaaatagttattttaaagtattttctgataatttctctgaCTCTGTGGACCTGTATCTATTGCCTATTATTCTTTTTTTTTCAATCATATGTGTGCCCTTAAAACAGATTATTTTTCTAAATTTATGGATGTATATTTTATATGAAAAAAATA---GAATGTTTAATTTAAGGCCTAGAATGAAATTATATCTCTTCAGAA---------TTTTATTTTTAATAGTCAGCTGGGCTACAGGACATCAGCAATTCCTGATCACCTTAATCCATTTCTGAGGATTGAGAGGATTTGAATCTGGCTTCAGCC-TTGCAAGGTCTGGTGTATTTCTGACTC-TCTTTTATCGTCGGTAAATACCTGCTTTATCAGCTCCCTAGTTTTCTTCATAGATCCTAGATCCCAGTTTTCATC-------------------CTTTTTCCCATG--AAAAGCTCTGTTCAGTTTCTCAGTCTCTCATTTGCCTTTGCCCTTTCAGGAATTAGTAAATATCTCCATAAAAAAACATCTCTGAAAAAAAAAAAAAAGCATCTGTGGATTTCCTTTTTTTTTCCCAGTCTTGGC-CCATATCCTTAGCGGTTCCTTCAGCTCTTCCTGCAACTGTTTTTATCTTTGTGCAGCTTTTCTAGTAGTCATCACTAGGCTTTTTCTGATTAAGTAGTTTATCACCAACAAAAGTGGAATTCCCCCAAAATAACTCTTAAATTTAACTCAGTAAACTTCTGAATATACTCTATAGTAATTA-AATTGATATAAG-ATTCTGAATTAACTGTACAGCAGTGGTGAAAAATG-TAATGGGCCTAGCCCTCtgtgacagagacagccagtatctatttgccgttcatttgcatgaatagaacatctgact-------tttttttttttccctgagcttctggccacctaaaatatagccaaagtcttcaaacccttgtgatagcta-------ttgagtaatgtctggtcagt-gcatgtatatgtgacttccaggcagtgtccttaaagacaagatcatgccttccttctctccttctg-catactgcagtctggaatggagacacaatgaccag-----agctccttcaagccaccttgggcaatgagatgaccttggcagtggaagtcctatgagacaagacaacaaaatgaaaagagcctggatccctgactctgtgggtcatcatatcaatgtttggtctgactacttctggacttctggaatgttatagacaaatacaagtctaccttatttaagcctctactgttttCTAT-----------------------AGTTATTTAT-------CTACATGCATTAATTAAAAGGATCCCTAATATAAGATAGCACTTGGCAATTGCCAAGTGAGCAGTATAAATCATACATACTATTAAAACTCACAGGAGGCAACTAGAGCCCTGTGAATTACT a score=29676.0 s hg17.chr7_random 49771 157 + 778964 TGAGGAAAACTTAGCTAGTGGATCCTATTGCCCTAGGGGGACTGAAAATCCAAGTCAGAAATGTTGATGCAGAGGGAAATTGTGATGATTTAAGCATTTTAAAATCCTTC-CAACAGGTTTTATTATTACAGTGTAAGA-TGGAAAAGGCATCTGTTAt s panTro1.chr6 161411887 157 + 161576975 TGAGGAAAGCTTAGCTAGTGGATCCTATTGCCCTAGGGGGACTGAAAATCCAAGTCAGAAATGTTGATGCAGAGGGAAATTGTGATGATTTAAGCATTTTAAAATCCTTC-CAACAGGTTTTATTATTACAGTGTAAGA-TGGAAAAGGTATCTGTTAt s canFam1.chr16 37433095 156 - 60307850 TGAAGAAAACTTAGTCAGTTAAATCTATTGCCTTAGGGGGAGTCAGAAACCAAACCAGGAATTTTGATGCAGAGGAAAATTATGATGATTTAAACACTTT---TTCTATCACAGCAGATTTTATCACTACATTGTTAGCTTGGAACAAGTATTTGCTAC a score=594320.0 s hg17.chr7_random 49928 6456 + 778964 ttttttttatttttttatttttttgagacagagtctcacttggccacccaggctggagtgcagtggcatgatatcagctcactgcaacctctgtctcctgggttcaagcaattctcctgcctcatcctcccgagcagctggcgttataggcatgtgccactacacctggctaattttttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaattcctgacctcaggtgatctgcctgccttggcctcccaaagtgctgtgattacaggcatgagccaccacacccCACCcatctgttattttttgacttttaagtaataggagttctgactggtgttagatggtgtctcattgcagttttcattatgcatttctctaatgatcagtaatgttgagattttttcatatgatttcaaggccatctgtatgtcttcttttgaagagtgtctgttcatatcttttgcccacttcctaatggggttgtttgtttttctcatgtaaatttgttcaagttccttatagatgctggatattagacctctgtcagatgc--agtttgaaaatattatctgccattctgtaggttgtctatttactgtgttgatagtttcttttgctgtgcagaagctctttagtttaattagaacccatttgccaatttttgcttttgttgcaattgtttttggcatcttcctcatgaaatcttttcctgtgcctgtgtcccgaatggtactggctatgttgtctcccagggtttttatagttttggattttacatttaagtctttaatccattttgagtcaatttttgtatatggtgtgaggaaggggtccagtttaattttctgcatatggctagccatttatcccagcaccatttattgaatggggaattctttctccattgcttgtttttgttaggtttgtcaaagatcatatagttgtaggtgtgcagtcttatttctgagttctctattctgttccattggtctatgtgtctgtttttgtaccagtatcatgctatgttggttactgtagccctgtaaaatattaatagttcagaggtgggtagcatgatgcctccagctttgttctttctgcttagcattgccttggctatttgggctcttttttggttccatttgaattttaaaatagttttttttttctagttctgtgaataatctcagtggtagtttaacaagaatagcattgaatctataagttgctttgggcagaatggccatgttaatgatcttcctattcatgagcatggaatgtttttatgtttctttgtgtcatctctgatttctttgagcagtggtttgtagttctccctgtagagatcttttgccacccgagttagctgtatttcttggtattttattctttttgtggcagttgtggatgggagtttattcatgatttggctcttggcttgactgttgttagtgtacaggaatgctagtgatttttgcacattgattttgtatcctgagactttgctgaagctgtttatctgcttaagaagcttAACAACCTAACATCaagttaacagcttaacatcacaaccgaaagaactagagagccaagagcaaacaaatcccaaaactagcagaagacaataaatgaccaaaaccagagcttaactgaaggagactgagacacagaaaaacattcaaaagatcaatgaatccaggagctg-tttttttttgaaaaaattaatacaacagaccactagctagactaataaaaaagagagaagattcaaataaacacagtcagaaatgacaagggggacattaccactgaccccacagaaatacaaacaaccatcagagaatattatgaacacctctatgcacagaaactagaaaatctagaagaaatggataaattcctggacacatacactatctcatggctgaaccaggaagaacttgaatctctgaacagaccaataataagctctgaaattgaggcaataataagtagcctaccaaccaaaaataaaaaaatccaggaccagatggattcacacctgaattccaccagatgtacaaaaaagagctggtaccattcctactgaaactactccaaaaaattgaggaggagggacacttttctaactcattctatgaggccagtatcatcctgacacaaaaacatgtcagagatacaacaaaaaagaaaatttcaagccaatatccttaatgaacattgatacaaaaaacctcagcaaaatactggcaaactgaatccagaagcacatcaaaaagcctatccaccacagtcaagtaggctttatctctgggatgcaaggttggttcaacatatgcaaattaataaatgtagaaaacttcataacctcagcccaaaagcttcttaagctgataagtaaaaatcttgaaagcagctgaggaaacaagtgacaacttacatatagaggaagagcagtttgaatgattgtgaatttctcatcagaaactacagaaccaaagactgtagaacaacatctttaaagagccaaaggaaaagactggccacctagaattttatattcaatgaaatatatATatgctaaaagaagctcttcaggctgtagaaaagaaaaagaagaaaacctggaacttcaagaataaacatgggaaaatataacaaacaatttttcttatcttaagatctttaaaacatatactgttattgaaagcaaaattttaaaaatttcagggaatgtcagtgtatgcagatgtaatatattttttaaatgtaatataaatgggggagggtaaaaggacctatatagctgcaatacttctacattttacttgaagtggtgcaatattaactctaagttgactgtgtagggatttaataatctctagggcaaccagt-aaaaaataatataaagagttatagcaaaaaaagagatagataagttgaagtagaatattaatattatttaaatgtccctatagaattcaggaagggaaagagagaggaacaaaggaggaaataataacatagtagaaataaatccaaatatcttaatgcttacattaagtgtaaatggtctaaatataccaattaaaagagaaagactcttaatttgtataaataaatactgcccaactacatgctgGGTCATAatatgccatgcagatactaatcaatcaaaagaaagctgtagacaaagtagtctgcagaagaaggtaaaccaaaaggtaaaagtgggacattacctaatgattaaaaggtcaattcatcaagaaaacataataatcctaagtgtttatgcacctaacaacagagcttgaaaatacatgaagcaaatactgatagaagtgagatgtaatctacaactgtatttggagatttcagtagttctctctcagtaatcaattgaaaaaggagagaaaaaatcagtaatgatctacatgtctgaccaacacaatcaaacaaaatgacttaacagcagaatagatatctcaagatatctccagcacatattctcaagcacagatgggacattcatcaagataggccacattctggggcataaagcaatccttaatgaatttaaaatgaatttaattgaagtcacacaaaatgtatatgctttgacaatgagggaatttaactagagatgaataatattaagattgatgaaaaaatcatcaaatatttggaaattaaacaacatacctttgagttacctatggaccaataaagaactatcaagataaattagtaaatattttgaactaaataaaataaaaatgaaacatgtaaaaacttatgggatctagctaaagcaatgactagaaggaaattttctagcattaaatgtttatattagaaaaggaggaataactctacctaaagagagaggaggaagacacaaaagaaaatgaagaaaaaataataaaaataaaagcctaaatcagtaatattgaaaacaataaagaaaatcaatgaaatcaaaagcttatactttgaaaaggtcactaaaattagtaaacctctagcaatactggcccataaatagtgagggaagacacaagttaccattatcagaactaaataaaggaatatcactacaggccctacataagttaaaagtaaaataaggggttactatgaacaagttatacccatgaatttgataattaagattaaattactgaatctcattcaggaaaacaaagataatctgaataactctatatcactaaggaaattgaacctgtagttaattttccaacaaagaaaactcaggctcagatgattatactaggaaattataccacatattcaaagaaaaaaataccaactctacacattcttttcctgaaaatagaaaaaggaaagaaaacccttctaaattcattttgtaaggccagcattctcttgatgccaaaaccagaaaaagacaagaaaataaaactatagaccatatacctcatgaatagaggggcaaatatcctcagcaaaatatcagtaaattgaatctatattttaaaagggagatgcatggaagccaagttagttttatctcaggaatatgaggtttattcaagttgaaaaccaaacaatgtcatgtatcatattgtattataatcaaacataggagtgctacaaatggtgtaacataccatattacagatgaaaaagaaaaaccatatgaccaatagatgctgaaatgcttttgataaaaatcaacatgcactcatgataTGtgtccatttgtactttccaatttaacattgtactggaagtccctgtaagtgcaaaaaggaataaagataaataaaagacatacagatcggacaggaaaaaaacctggcactacttccagtaatcataatggtctagatagaaaataccatggaatttataaaagaagctactagaaatgataaaagagattaacataatagtttaggtataatggacacattactggaaacgtgcaactaagcaaatacaacccaaggagaaatagaaagcctgagtagccctagggtccctaaagaaatttaatctgtaattaaaaaCGggaggtgaacatgctggagttgttagggagagctctttagatcaacacaagtggaaggagaggagaaggagcagggttgggcagagaaggaagcaacttggaggttatgttacctaccaagaaagtatgttctagttatacattcggggacctaggaggtgatgaacaaatggcctctgcat-cagtggactcactgtgacctggacctgagccaaagttctattagctgcttagcctcaaagtgctcccattttaacagaagggccacgatgacatttcagaccattgcatataaatgtcaacttcaggggtcgtgctaaagggtctttgaaaagtccaagtattggctgtgcacggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggattacaaggtcaggagattgagaccatcccggctaacacggtgaaaccccatctctactaaaaatacagaaaattagctgggcctggtggcaggtgcctgtagttccagctactcagcaggctgaggcaggagaatggtgtgaacccgggaggcagagcttgcagtgagctgagattgcgccactgcactccagcctgggtgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaagaaaGAAAGAAAAGTCCGGATATTGCCCCTTTACTCTGGTGCAGTCACCTGCATAAGGGAAGGACTGGGGGAGTCAGCGCCATGTGCACCCACCATCGTGGGTCAGGAAGAACTGAAGAGCATCAGCGCCATGTGGACTCACCATCGAGGGTCAggaaggactggggagtcagcgccatgggcattcgccatcgtgggtcaagctccttcctcttgtggacctggcgactccttcaaatcgtcccctcactggcgtgagtctggaaactgggcgagTCCCTGAGTTGTGCTGGGGTGACCATGACCTGTTTCATTATCGTCCTTATTTTCATTGCATACACTGCATAGTGCCTcttttcactgcctgtc-tgttttgcatccagcgacactgttctgttaaccctctgtggatcaggttccctcaaggccactccagccttgtcacagatgaagataactgcatccaccaggctgctgaaggcgaagtgcagccatctagtctgtattgttcagggtccttttgccccacagctgtcagaaagcctccctcggtgatggactctgctgctggcagcccagcctgcacgtgcacggggagccactgttTCTCCTGCCACCCGTACATTCCCCTGGGGCTTCCCACGtgcgatggcccggatgtctgcgtcttccccagattcacagattgaagccctaatccccagtgtaaatgatatttgggggtggagct s panTro1.chr6 161412044 6455 + 161576975 tttttttaatttttttatttttttgagacagagtctcacttggccacccaggctggagtgcagtggcatgatatcagctcactgcaacctctgtctcctgggttcaagcaatcctcctgcctcatcctcccaagcagctggcgttatgggcatgtgccactacacctggctaattttttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaattcctgacctcaggtgatctgcctgccttggcctcccaaagtgctgtgattacaggcatgagccaccacacccCACCcatctgttattttttgacttttaagtaataggagttctgactggtgttagatggtgtctcattgcagttttcattatgcatttctctaatgatcagtaatgttgagtttttttcatatgatttccaggccatctgtatgtcttcttttgaagagtgtctgttcatatcttttgcccacttcctaatggggttgtttgtttttctcatgtaaatttgttcaagttccttatagatgctggatattagacctctgtcagatgcatagtttgaaaatattatctgccattctgtaggttgtctatttactgtgttgatagtttcttttgctgtacagaagctctttagtttaattagaacccatttgccaatttttgcttttgttgcaattgtttttggtatcttcctcatgaaatcttttcctgtgcctgtgtcccgaatggtactggctatgttgtctcccagggtttttatagttttggattttacatttaagtctttaatccattttgagtcaatttttgtatatggtgtgaggaaggggtccagtttaattttctgcatatggctagccatttatcccagcaccatttattgaatggggaattctttctccattgcttgtttttgttaggtttgtcaaagatcatatagttgtaggtgtgcagtcttatttctgagttctctattctgttccattggtctatgtgtctgtttttgtaccagtatcatgctatgttggttactgtagccctgtaatatattaatagttcagaggtgggtagcatgatgcctccagctttgttctttctgcttagcattgccttggctatttgggctcttttttggttccatttgaattttaaaatagttttttttttctagttctgtgaagaatctcagtggtagtttaacaagaatagcattgaatctataagttgctttgggcagaatggccatgttaatgatcttcctattcatgagcatggaatgtttttatgtttctttgtgtcatctctgatttctttgagcagtggtttgtagttctccttgtagagatctttcgccacctgagttagctgtatttcttggtattttattctttttgtggcagttgtggatgggagtttattcatgatttggctcttggcttgactgttgttagtgtacaggaatgctagtgatttttgcacattgattttgtatcctgagactttgctgaagctgtttatctgcttaagaagcttAACAACCTAACATCaagttaacagcttaacatcacaaccaaaagaactagagagccaagagcaaacaaatcccaaaactagcagaagacaataaatgaccaaaatcagagcttaactgaaggagactgagacacagaaaaacattcaaaagatcaatgaatccaggagctgctttttttttgaaaaaattaatacaacaaaccactaactagactaataaaaaagagagaagattcaaataaacacagtcagaaatgacaagcgggacattaccactgaccccgcagaaatacaaacaaccatcagagaatattatgaacacctctatgcacagaaactagaaaatctagaagaaatggataaattcctggacacatacgctatctcatggctgaaccaggaagaacttgaatccctgaacagaccaataataagctctgaaattgaggcaataataagtagcctaccaaccaaaaataaaaaaatccaggaccggatggattcacacctgaattccaccagatgtacaaaaaagagctggtaccattcctactgaaactactccaaaaaattgaggaggagggacacttctgtaactcattctatgaggccagtatcatcctgacacaaagacatgtcagagatacaacaaaaaagaaaatttcaagccaatatccttaatgaacattgatacaaaaaacctcagcaaaatactggcaaactgaatccagaagcacatcaaaaagcttatccaccacagtcaagtaggctttatctctgggatgcaaggttggtttaacatatgcaaattaataaatgtagaaaacttcataacctcagcccaaaagcttcttaagctggtaagtaaaaatcttgaaagcagctgaggaaacaagtgacaccttacatatagaggaatagcagtttgaatgattgtgaatttctcatcagaaactacagaaccaaagactgtagaacaacatctttaaagagccaaaggaaaagactggccacctagaattttatattcaatgaaatatatATatgctaaaagaagctcttcaggctgtagaaaagaaaaagaagaaaacctggaacttcaagaataaacatgggaaaatataacaaacaatttttcttatcttaagatctttaaaatatatactgttattgaaagcaaaattttaaaaatttcagggaatgtcagtgtatgcagatgtaatatattttttaaatgtaatataaatgggggagggtaaaaggacctatatagctgtaatacttctacattttacttgaactggtgcaatattaactctaagttgactgtgtagggatttaataatctctagggcaaccagtaaaaaaataatataaagagttatagcaaaaaaagagatagataagttgaagtagaatactaatattatttaaatgtccctgtagaattcaggaagggaaagagagaggaacaaaggaggaaataataacacagtagaaataaatccaaatatcttaatgcttacattaagtgtaaatggtctaaatataccaattaaaagagaaagactcttaatttttataaataaatactgcccaactacatgctgGGTCATAatatgccatgcagatactaatcaatcaaaagaaagctgtagacaaagtagtctgcagaagaaggtaaaccaaaaggtaaaaatgggacattacctaatgattaaaaggtcaattcatcaagaaaacataataatcctaagtgtttatgcacctaacaacagagcttgaaaatacatgaagcaaatactgatagaagtgagatgtaatctacaactgtatttggagatttcagtagttctctctcagtaatcaattgaaaaagtagagaaaaaatcagtaatgatctacatgtctgaccaacacaatcaaacaatatgacttaacagcagaatagatatctcaagatatctccagcacatattctcaagcacagatgggacattcatcaagataggccacattctggggcataaagcaatccttaatgaatttaaaatgaatttaattgaagtcacacaaaatgtatatgctttgacaatgagggaatttaactagaggtgaataatattaagattgatgaaaaaatcgtcaaatatttggaaattaaacaacatacctttgagttacctatggaccaataaagaactatcaagataaattagtaaatattttgaactaaataaaataaaaatgaaacatgtaaaaacttgtgggatctagctaaagcaatgactagaaggaaattttctagcattaaatgtttatattagaaaaggaggaataactctacctaaagagagaggaggaagacacaaaagaaaatgaagaaaaaataataaaaataaaagcctaaatcagtaatattgaaaacaataaagaaaatcaatgaaatcaaaagcttatactttgaaaaggtcactaaaattagtaaacctctagcaatactggcccataaatagtgagggaagacacaagttaccattatcagaactaaatgaaggaatatcactacaggccctacataagttaaaagtaaaataaggggttactatgaacaagttatacccatgaatttgataattaagattaaattactgaatctcattcaggaaaacaaagataatctgaataactctatatcactaaggaaattgaacctgtagttaattttccaacaaagaaaactcaggcacagatgattatactaggaaattctaccacatattcaaagaaaaaaataccaactctacacattcttttcctgaaaatagaaaaaggaaagaaaacccttctaaattcattttgtaaggccagcattctcttgatgccaaaaccagaaaaagacaagaaaatacaactatagaccatatacctcatgaatagaggggcaaatatcctcagcaaaatatcagtaaattgaatctatattttaaaagggagatgcatggaagccaagttagttttatctcaggaatatgaggtttattcaagttgaaaatcaaacaatgtcatgtatcatattgtattataatcaaacataggagtgctacaaatggtgtaacataccatattacagatgaaaaagaaaaaccatatgaccaatagatgctgaaatgcttttgataaaaatcaacatgcactcatgataTGtgtccatttgtactttccaatttaacattgtactggaagtccctgtaagtgcaaaaaggaataaagataaataaaagacatacagatcggacaggaaaaaaacctggcactacttccagtaatcataatggtctagatagaaaataccatggaatttataaaagaagctactagaaatgataaaagagattaacataatagtttaggtataatggacacattactggaaatgtgcaactaagcaaatacaacccaaggagaaatagaaagcctgagtagccctagggtccctaaagaaatttaatctgtaattaaaaaCtggaggtgaacatgctgaagttgttagggagagctctttagatcaacacaagtggaaggagaggagaaggagcagggttgggcagagaaggaagcaacatggaggttatgttacctaccaagaaagtatattccagttatacattcggggacctaggaggtgatgaacaagtggcctctgcatccagtggactcactgtgacctggacctgagccaaagttctattagctgcttagcctcaaagtgctcccattttaacagaagggccacgatgacatttcagaccattgcatataaatgtcaacttcaggggttgtgctaaagggtctttgaaaagtccaagtattggctgtgcacggtggctcacacctgtaatcccagcactttgggaggccgaggcaggtggattacaaggtcaggagattgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacagaaaattagctgggcctggtggcaggtgcctgtagttccagctactcagcaggctgaggcaggagaatggcgtgaacctgggaggcagagcttgcagtgagctgagattgcgccactgcactccaggctgggtgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaa------aaagaaagaaaagtccgggtattgcccctttactctggtgcagtcacctgcataagggaaggactgggggagtcagcaccatgtgcacccgccctcgtgGGTCAGGAAGAACTGAAGAGCATCAGCGCCATGTGGACTCACCATCGAGGGTCAGGAAGGACTGGGGAGTCAGTGCCATGGGCGTTCGCCATCGTGGGTCAAGCTCCTTCCTCTTGTGGACCTGGCGACTCCTTCAAACCGTCCCCTCACTGGCGTGAGTCTGGAAACTGGGCGAGTCCCTGAGTTGTGCTGGGGTGACCATGACCTGTTTCATTATCGTCCTTATTTTCATTGCATACACTGCATAGTGCCTcttttcactgcctgtcttgttttgcatccagcgacactgttctgttaaccctctgtggatcaggttccttcaaggccactccagccttgtcacagatgaagataactgcatccaccaggctgctgaaggcgaagtgcagccatctagtctgtattgttcagggtccttttgccccacagctgtcagaaagcctccctcagtgatggactctgctgctggcagcccagcctgcacgtgcacggggagccaccgttTCTCCTGCCACCTGTACATTCCCCTGGGGCTTCCCACAtgcgatggcccggatgtctgcatcttccccagattcacagattgaagccctaatccccagtgtaaatgata-ttgggggtggagcT a score=259279.0 s hg17.chr7_random 56471 2851 + 778964 gtgttctttctctctccctccttctgccacggggagaagg------cac-ccacagcagacaccaga-gctgctggccaccagaactatgagaaataaatgtttgttgttgaggccaccgagtccatggtgcctgtgacagcagccttagcTGATGGAGATGCTGGGGGTCACAGTGTTCCAGCTGCTTGTCTGCCTCAgcccacttccctgagcctgtgaaccccctaacgtcggcaccctccagggaagctctggcacaatttccacctcacttgctgcagagcttcacgcttcactcataggggacagcctagtacggtttccccattgcctggggtcctctcctatattccacgagagtgcttccaagctgacaaattctccTCATCTGTGGGCCTGGCTTTGACACAACAAACCCAGTGAGGTTGAGGGTTTGCCCTTCTTGGGAGCTGCAGCTTTTGAGATCCAGTCCTGAGATGGGTCATGATTTCCACCTATAGGAGATGAGAGCTGTTTTTTGTTTTTTAAATTGAGAGCCCTTTTCATGCTCCTGGGAGCCCTCTAGGGTTTACACTCAGCTTTTAGTTGCTGAGTAATCACTTCCTTCTTCAAAGGGTTCATCGAAGTTGATAGCAGCCATGAGATTCTGGGCCCTGCTAATTATTATTTCCCGATATTTCTTAAATGTCTTTTATATCACACCTGCTGGTCTGTGATCCCCGCTGACCTCTGGTCCAAGTTTTGATGCTGGTGTGGCTCCTTGTGCCAGGGCCAGTCGCTGCTTCACCTTGCAGTAGGCACCTGTCTCTGGTGGCAGGTGACTGAGCTCCAAGATGACATCCCAGTATCTGTTCTGTTTTACCACTGCTGGTGTGGGCTTCACAGACTTGGCTCCCAGGAAGACAATGACATGGAAAGGATTATGCTGGAGGTTCATTTAGGAGTGcacctgtgggagggaaggaagcagggttgggcaaaggaagaatctgcctggaatgcagtctcaacagaggcctcagctgacctatagaagctctgaagctgcaatgatcctcccaagtggtccttaatgtgggcctttcgctcccacctggagtggtcagtggacgtagggagcccgggaaaaagggtgtggccttgggtaagacagtgtcttcctgccaggcaatcccccaggggacctggcagttgcaggccctctgccgaccatgcttccagcagctgCAAGAACCCAGGGAGGTCTCAGTGGATCATGACGGGATCTGCAGCACGGGCTAACAAGCCAGGCCCCAGAGACACACACTGTTCCCTTCCCTTCCACGAAGTTCAGAGCCAGGCGTAGCTAGACTACTGCAGCACGAGTGTTGGGTGGGTGGGCACAGGTTCTGCCTGGCAAACGTCACATGCTTTTACCAAGGTGGTGACCATGTGAGTGAGTGCCTTGTGTTTACACTTTGGGTATTTTCTTATTTGTGTTAAACTTCAAAAAATGTGAAAACATTCGAAAGAAGACAGTGTCTCCTGGGATCTGGGCAGCAGGCTGGGTCTGAACTCTCGCTTACCTCTTGTGGATGTTAACACAGCCTGGAATTTCCTGGTTTGTTAGTCAAGGAATACTTTACCCAGGTGCAATCCATCTGCTTTCATTTTTTTAGTCAGTAAATTGGACTCCTTTCTTTTTGTCTGCTTGAAATGACTAAAGCAATGTGTGTGTTGTTTTTAGAATGGAAGGCTTTGCATAACTGACACTAACATTATTTCTTTCCAATCATATTGCAAGTTGCCTGCATGTTGtgtaaaccaaagagtgcctgatacgggtctcaatcagcttagaggtttattttgccgaggttgaggatgtactcaggagaaagagacagactgcagtaggacctgtggcccatactttttccaaagagggttttgagggcctcaatacctaaaggagaaaagcaggcaggaggggaaggaggaaaggaaaaaaagatttttttctgtagaaaaaaatcagacaagaagttgcattcttttgaggctttgattagtgctcagtgaatccacaagctgcaggtgaaaggaggggagaggaacagcggagtatgtggctgtctctcactcagtgaatctgcactttgcacgagatgaagtacacacagagtggaggaagaagtcgaacaggcattcatctcagggtgggtggtgggacaatttattgtcctgcactcacaaagataaggtgttaatttacactgtcagggtgagagaggccacctggggaggtccctgtttaacagaaggaaagggagttgtttgtggctcagtttccaagctcaactttcccttttggcatagtgagtttgggatctgagattttattttccttttgcaGTTGCAATGTACTTATTATCAAAGTTAGGGCATCCATCTACTCCAGAGTAATTTTGCTTTTAGGATGAATCAAAATAATGCCTCATATCTGATATTTTGAAAAGCTCTTCACAGCAAGAAGGAATTTTGCTGATTTTGGAGCAAGAGCAGTGAGAGCAGGATGATCCCAAGTCCTACCCTGTTTTAGTCACTCCAAGAAAAGGTTTCTCACGGAAGAGGAATGAGTCTGTGTCAACTGTTCCCAAGACATCCTGTAGGAGCCCAGAAGGCCAGGAGCCCAGAAG-GCCCTGGACATTTTGGGAGCACCCATTCTAAGGAAGTGGGCACTTTCACCAAGTAAACAGAAAGAGGTCGGGAGGAGCTCTCTACGATATGTTTTCCACTTACGCTGATACCTTAAATCACACAATTAAGGATCCAGATTTTTCATTCCATGTTAGGTAAAAAGCTTTAAAAGCATATG s panTro1.chr6 161418599 2838 + 161576975 GTGCTCTTTCTCTCTCCCTCCTTCTGCCACGGGG-----GAGCCGTCACACCAcagcagacaccagaagctgctggcctccagaaccatgagaaataaatgtttgttgttgaggccaccgagtccatggtgcctgtgacagcagccttagCTGATGGAGATGCTGGGGGTCACAGTCTTCCAGCTGCTTGTCTGCCTCAgcccacttccctgagcctgtgaaccccctaacatcggcaccctccagggaagctctggcacaatttccacctcacttgctgcagagcttcacgcttcactcataggggccagcctagtagggtttccccattgcctggggtcctctcctatattccacgagagtgcttccaagctgacaaattctccTCATCTGTGGGCCTGGCTTTGACACAACAAACCCAGTGAGGTTGAGGGTTTGCCCTTCTTGGGAGCTGCAGCTTTTGAGATCCCGTCCTGAGATGGGTCATGATTTCCACCTATCGGAGATGAGAGCTGTTTTTTGTTTTTTAAATTGAGAGCCCTTTTCATGCTCCTGGGAGCCCTCTAGGGTTTACACTCAGCTTTTAGTTGCTGAGTCATCACTTCCTTCTTCAAAGGGTTCATGGAAGTTGATAGCAGCCATGAGATTCTGGGCCCTGCTAATTATTATTTCCCGATATTTCTTAAATGTCTTTTATATCACACCTGCTGGTCTGTGAACCCCGCTGACCTCTGGTCCAAGTTTTGACACTGGTGTGGCTCCTTGTGCCAGGGCCAGTCGCTGCTTCACCTTGCAGTAGGCACCTGTCTCTGGTGGCAGGTGATTGAGCTCCAAGATGACATCCCAGTATCTGTTCTGTTTTACCACTGCTGGTGTGGGCTTCACAGACTTGGCTCCTGGGAAGACAATGACATGGAAAGGATTATGCTGGAGGTTCATTTAGGAGTGcacctgtgggaggaaaggaagcagggttgggcaaaggaagaatctgcctggaatgcagtctcaacagaggcctcagctgacctatagaagctctgaagctgcaatgatcctcccaagtggtccttaatgtgggcctttcgctcccacctggagtggtcagtggacgtagggagcccgggaaaaagggcgtggccttgggtaaggcagcgtcttcctgccaggcaatcccccaggggacctggcagttgcaggccctctgccgaccatgcttccagcagctgCAAGAACCCAGGGAGGTCTCAGTGGATCATGACGGCATCTGCAGCACGGGCTAACAAGCCAGGCTCCAGAGACACACACTGTTCCCTTCCCTTCCACGAAGTTCAGAGCCAGGCGTAGCTAGACTACTGCAGCATGAGCGTTGGGTGGGTGGGCACAGGTTCTGCCTGGCAAACGTCACACGCTTTTCCCAAGGTGGTGACCATGTGAGTGAGTGCCTTGTGTTTACACTTTGGGTATTTTCTTATTTGTGTTAAACTTCAAAAAATGTGAAAACATTCGAAAGAAGACAGTGTCTCCTGGGATCTGGGCAGCAGGCTGGGTCTGAACTCTCGCTTACCTCTTGTGGATGTTAACACAGCCTGGAATTTCCTGGTTTGTTAGTCAAGGAATACTTTACCCAGGTGCAATCCATCTGCTTTCATTTTTTTAGTCAGTAAATTGGACTCCTTTCTTTTTGTCTGCTTGAAATGACTAAAGCAATGTGTGTGTTGTTTTTAGAATGGAAGGCTTTGCATAACTGACACCAACATTATTTCTTTCCAATCATGTTGCAAGTTGCCTGCATGTTGtgtaaaccaaagagtgcctgacacgggtctcaatcagcttagaggtttattttgccgaggttgaggatgtactcaggagaaagagacagactgcagtaggacctgtggcccatactttttccaaagagggttttgagggcctcaatacctaaaggagaaaagcaggcaggagggggaggaggaaaggaaaaaaagatttttttctgtagaaaaaaatcagacaagaagttgcattcttgtgaggctttgattagtgctcagtgaatccacaagctgcaggtgaaaggaggggagaggaacagcggagtatgtggctgtctctcactcagtgaacctgcactttgcacgagatgaagtacacacacagtggaggaagaaggcaaacagggcttcatgtcagggtgggtggtgggacaatttattgtcctgcactcacaaagataaggtgttactttacactgtcagggtgagagaggccacctggggaggtccctgtttaacagacggaaagggagttgtttgtggctcagtttccaagctcaactttcccttttggcatagtgagtttgggatctgagattttattttccttttgcaGTTGCAATGTACTTATTATCAAAGTTAGGGCATCCATCTACTCCAGAGTAATTTTGCTTTTAGGATGAATCAAAATAATGCCTCATATCTGATATTTTGAAAAGCTCTTCACAGCAAGAAGGAATTTTGCTGATTTTGGAGCAAGAGCAGTGAGAGCAGGATGATCCCAAGTCCTACCCTGTTTTAGTCACTCCAAGAAAAGGTTTCTCACGGAAGAGGAATGAGTCTGTGTCAACTGTTCCCAAGACATCCTGTAGGAGCCCAGA-----------------GTGCCCTGGACATTTTGGGAGCACCCATTCTAAGGAAGTGGGCACTTTCACCAAGTAAACAGAAAGACGTCGGGAGGAGCTCTCTACGATATGTTTTCCACTTACGCTGATACCTTAAATCACACAATTAAGGATCCAGATTTTTCATTCCATGTTAGGTAAAAAGCTTTAAAAGCATATG a score=22930.0 s hg17.chr7_random 59322 156 + 778964 GCCTCAGTAAAGCCAGCACACCAATTCCAAACTGCTGCTCGGTGCAACTTGAGAATGCAGCAGAAATTGTGCATGTGTTGACACTGCTCCATTTCATTAGGAAGAATGAAAACagg-aaataca-----------ggtgaaaatcttccaaactttgaagtagtcaaa s panTro1.chr6 161421437 156 + 161576975 GCCTCGGTAAAGCCAGCACACCAATTCCAAACTGCTGCTCGGTGCAACTTGAGAATGCAGCAGAAATTGTGCATGTGTTGACACTGCTCCATTTCATTAGGAAGAATGAAAACAGG-AAATACA-----------GGTGAAAATCTTCCAGACTTTGAAGTAGTCAAA s canFam1.chr16 22881061 156 + 60307850 GCCTGGGTGAAGCTAATACATC-------AACTGCTATTT-TCACAACTTGAAGGTACAATGGAGTTTGTG--TGTGGTAGAAGTGTTCAACTTTATTAAAAAGACCGAAAGTAGGTAGACACAGCAGAAAATTGGATGAAGATCTTCCAAACTTTGA--TAGGAAAA a score=102289.0 s hg17.chr7_random 59478 651 + 778964 gatttcttaaataagcccaacaagagttatcaataacagaaaatcaaattaccttaaagaaattggaaacacattacaaaataaaaacAGATATGTTCCGCACAAAATGCACA----AAGGCTTAGTGTCTATAA--------TTCaaagaactattataaatcaataagaaaaggactgataattcaattacaagtgtccaaaaggcagcacacagttca-aaaaaatggaacatataaccaacaaatatatgcagag--gccgaatatccttagtgatcaggaaaatgcaagtccaaatcaca--gagataacattttactgtcatttaagtgggaaaaagtggtgacatctgatggcaccaagcaaaggggcagatgcagattgcctggaccccatgcacattcctggtgggaataaagctggagctgctgctgtggacagcagcttgTCCCTATGCTGGGAGCTGCGGCATTCATATTCCCTGtga------------------------------gcacc-aaaggcatcagcaaaaatgtttcat-tcacaggaaagcaaaaatctggaaacaattcaaatcacttctaacaggaaaatggataaactgttgcacattccaaccatacgttattttacagtgctccaagtgaagaa-tatagcgacatgcaatcagatgcataaattttaacaaT s panTro1.chr6 161421593 651 + 161576975 GATTTCTTAAATAAGCCCAACAAGAGTTATCAATAACAGAAAATCAAATTACCTTAAAGAAATTGGAAACACATTACAAAATAAAAACAGATATGTTCCGCACAAAATGCACA----AAGGCTTAGTGTCTATAA--------TTCaaagaactattataaatcaataagaaaaggactgataattcaattacaagtgtccaaaaggcagcacacagttta-aaaaaatggaacatataaccaacaaatatatgcagag--gccgaatatccttagtgatcaggaaaatgcaagtccaaatcaca--gagataacattttactgtcatttaagcgggaaaaagtggtgacacctgatggcaccaagcaaaggggcagatgcagattgcctggaccccatgcacattcctggtgagaataaagctggagctgctgctgtggacagcagcttgTCCCTATGCTGGGAGCTGCGGCATTCATATTCCTTGtga------------------------------gcacc-aaaggcatcagcaaaaatgtttcat-tcacaggaaagcaaaaatctggaaacaattcaaatcacttctaacaggaaaatggataaattgttgcacattcaaaccatacgttattttacagtgctccaagtgaagaa-tatagcgacatgcaatcagatgcataaattttaacaaT s canFam1.chr16 22881425 668 + 60307850 GATTTCTTGAATGAGCCC-TCAAG---TATTGATAAT-GGAAATCATGTTATCTTAAa-aaactgaaaacatataacaaaatgggagcagatatgt-----gcaacatgtaaatggtaaatattagtagctataagacttaggtacctagaacttttatgaatcaataagaaaaggactaa----------ataaaaattttaaatgtagcacatacttcacagaaaatgaaattcataaccaacaaatacatgaagaggagctcaataatagtagtgat-aggaaaatgaaaatcatgatcacagtgagatgccatctttctcctattcaagt-agaaaatgtaatgaggtctgataatgccaagggtggaaagaggtgtggatcagcagactctcttacatattgctggtat-----aagttggaacagctgctctggaaagcagtttgacatgatgctatgactctgaacattcatatttcctgtgacccaaggcaaacacttgcatatgtacatatgcatcaaaagacacaaataagaatgtgtcatatcac-----agcaaaaatctggaaacaattcaaatgactactataaggaaaatggataaattgccatatattcaaacaataaattatattatggcacctcaaattaagaattatagctacctgaaaccatacatatgagtttttgtaat a score=29629.0 s hg17.chr7_random 60129 329 + 778964 CAgaccgggtgcggtggctcacacctgtaatcccagcattttgggaggctaaggtgggtggatcacgaggtcaggagatagagaccattctggctaacacagtgaaaccctgtctctactaaaaatacaaaaaattaggcgggtgtggtggctggtacctgtagtcccagctactcgggaggctgaggtaggagaattgtatgaacccgggaggcagaggttacagagagctgagatggcgccactgcactccagcctgggcgacagagcaagactctgtctcaaaaaaaaaaa--aaaagaaaaagaaaaagaaAAAATTTTTTAACAAT s panTro1.chr6 161422244 331 + 161576975 TAgaccgggtgcggtggctcacacctgtaatcccagcattttgggaggctaaggtgggtggatcacgaggtcaggagatagagaccattctggctaacacagtgaaaccctgtctctactaaaaatacaaaaaattaggcgggcatcgtggctggtacctgtagtcccagctactcgggaggctgaggcaggagaatggtatgaacccgggaggcagaggttacagtgagctgagatggcgccactgcactccagcctgggcgacagagcaagactctgcctcaaaaaaaaaaagaaaaagaaaaagaaaaagaaaaaATTTTTTAACAAT a score=154012.0 s hg17.chr7_random 60458 942 + 778964 TTAATTTTGCCTGGCAAGTGAAAATCCCaa--aattaaaaaaaaaaaaaaaCAACCAACTAAAACTGAAGCCACATGATTTTTAGGGACATACTTCCAAGGTAGACACATATGTGCAGGAA-GCCCAGACAC---AGACATCAGCCATCTGGGGA---------------GAGGGAGGGATGGGGGCATTCAGGCAGATGTAGGTTCGTTTCCAATGCCCTACTTTTCATTTGGGGTAA-----CTTTAGTAGGTAGTTGTTGAATTGTTTAAA----TTAATTTTTAAAAGCAGGCTTTGCATGAACAATGATGAGAGTATGTAAAAAACTGAAGTTTCAATTAAAAGAAATAAACAGGAAATGACCATGTGTTGAAACCAGAAGCAGCTGAGCTGAGAAAATCTTATCAGAAAGTGAGAAAATAGCGCGACAAACAGCCACA-AGAAGAGGGCTCATCTGTGTGAGTACAAACGTGGCCTGCTCCATCGTTTTGCTGA--ACCAGCCTTGACAAGGGCACTTTACTCTGGTTAAATTCCAGAGAAGCAATTTTTCTAAAACAACTTTGTCTCCTCTTTGGGG-----------------ATCAAAGGCAGA---ATGTGCCATTTTCTACCTCCTAG-CGAGGGGATACATTTGAAATCCTCCAAGAGCTTAAGAGTTTGCATCTTGGCCACTTTCCCAGCATATGTGCTTTAAAGAGACCAGAAAATGGTGTTTTCAAAA--TACTTCCTGGAATCTTTTATAAGGTAATAAATCAGCAGGAAAGGTCA-CCCGGCCTGCTCCTTCTTACCACTTCTGTAA-TAAACATAAGTTTCCATTAATATTAAATATTTCTTATGACAATTTTAGTCTAAAC---ATATTATCAATTATCTT----AGAAATGAACTATGTCACTAATAAAAATCATCATCATATTAA-TTTTCTATTTGGCTTTCAAATTTATAAAACCTTTATCATCTCATTTG-ATAAAATCCTGTGA s panTro1.chr6 161422575 942 + 161576975 TTAATTTTGCCTGGCAAGTGAAAATCCCAA--AATTAAAAAAAAAAACAAACAACCAACTAAAACTGAAGCCACATGATTTTTAGGGACATACTTCCAATGTAGACACATATGTGCAGGAA-GCCCAGACAC---AGACATCAGCCATCTGGGGA---------------GAGGGAGGGATGGGGGCATTCAGGCAGATGTAGGTTCCTTTCCAATGCCCTACTTTTCATTTGGGGTAA-----CTTTAGTAGGTAGTTGTTGAATTGTTTAAA----TTAATTTTTAAAAGCAGGCTTTGCATGAACAATGATGAGAGTATGTAAAAAACTGAAGTTTCAATTAAAAGAAATAAACAGGAAATGACCATGTGTTGAAACCAGAAGCAGCTGAGCTGAGAAAATCTTATCAGAAAGTGAGAAAATAGCACGACAAACAGCCACA-AGAAGAGGGCTCATCTGTGTGAGTACAAACGTGGCCTGCTCCTTCGTTTTGCTGA--ACCAGCCTTGACAAGGGCACTTTACTCTGGTTAAATTCCAGAGAAGCAATTTTTCTAAAACAACTTTGTCTCCTCTTTGGGG-----------------ATCAAAGGCAGA---ATGTGCCATTTTCTACCTCCTAG-CGAGGGGATACATTTGAAATCCTCCAAGAGCTTAAGAGTTTGCATCTTGGCCACTTTCCCAGCATATGTGCTTTAAAGAGACCAGAAAATGGTGTTTTCAAAA--TACTTCCTGGAATCTTTTATAAGGTAATAAATCAGCAGGAAAGGTCA-CCCAGCCTGCTCCTTCTTACCACTTCTGTAA-TAAACACAAGTTTCCATTAATATTAAATATTTCTTATGACAATTTTAGTCTAAAC---ATATTATCAATTATCTT----AGAAATGAACTATGTCACTAATAAAAATCATCATCATATTAA-TTTTCTATTTGGCTTTCAAATTTATAAAACCTTTATCATCTCATTTG-ATAAAATCCTGTGA s canFam1.chr16 22882093 911 + 60307850 ttaattttgggtgCTAATGAAAATTTCCAAAGAATTAAAAA--------------TAACTAAAACTGAAGCCACGTGATTTTTAGGAACATATGTATAAGATAAAAATATATGTACAGAAACGACAAGAGACATGAGATATCAGCCACAAGAGAAGTGTGGGATGTGGACGAGTGTGGGATGGGGGC--TGAGATAGTAAT-------TTTCTAATGTCTTAGTTTTTATTTGGGGAAGTGTTTTTTTTTTAGGTGTTTGCTAAGTTATTTAAATACTTTAATCT------------------TAAACAATAGTAAGAGTATACCAGAACCTG--GTTTCAATTTGAAGATATAAACAGGAAATGACCATGTG-----------------------------ATTGAATCAGAAAGTGAGAAA--AGAACAAAAAACAGAAAAATATAAAAGAGACAATCAG-ATGAGTATAAA--TGGGCTGCTCTGTTGTTTTGCTGAGGAGCAGCGCTGAGAAGAA----------TGTTTAAATTCCAGAGAAGCATTTTTTCTAAAGCAACTTTGTCTCCTCTTGGAGGTATCTAACCCTAAACACACCACAGTTAGAGATGTGTGTTCTTCCCAACCTCCTGGACAGGGGGATAC--TTGAAATCCTCCAGGTGCTTATGTGTTCTCATTCTGACTGCTTGCTCAG-GGGTGCAATTTCCAGGGACCAGGAAATGGTATTTTCAAAATGTATTTCCTGAAAAC-TTTATAAGGTAATAAATCAATAGGAAAGGTCACCCCACCCTGGTCCTTCTCACCACTTCCAGAGTTAAACATAAGTTTCAGTT-------AATATTTCAAGTGAAATTTTTAGTCTAAACATGATACTATCAATTATCTTAGGGAGAAATTAACTATGTCACTAATAATAATCATCTCAATATTAATTTTTCTGTTTGGCTTTTAAATTTATAAAAACTTTATTATCTCTTTTGAAAAAAATCCTATGA a score=6131.0 s hg17.chr7_random 61400 53 + 778964 TAGTTTCATTAC-----------------------AACACAAATTGCATGTTGTAATCATCTTGCTTAGTTTCTGT s panTro1.chr6 161423517 53 + 161576975 TAGTTTCATTAC-----------------------AACACAAATTGCATGTTGTAATCATCGTGCTTAGTTTCTGT s canFam1.chr16 22883338 76 + 60307850 CAGTTTAATCACTCTGGTTTATTCTTCATGATGCTAACACAATATTAGCATTGTGATCACCTTTTTACATTTTTAt a score=73545.0 s hg17.chr7_random 61453 542 + 778964 -CACT-------TTTTAAAACCTGATTTGTCTGTCACCATGCTGGAATGTCAGTGCCTCTGTGGCATCACCTGTCTCTCTTGCCACCGCCTGGCTCAG-GCCTGGCACGTGCTCAGTGAGTTTGC--AAGACTGAAGGGCACCCCTG-CCTCCACGTCAAATCCCAGGGGTCCCTCACGGCGCTGCATGTGGGAA-GATGGAGGCTGAGCCCCAG-TTTGCATGCCATGGTGCTGGCCCTCGCGTATGAAATACACCAGTGA--------------------------------TTATAAAGGTTAGTGAAAAATCTAATTATGAAATTGTACATAAACTACGATTA-ACTCTTTTTGTATA-----------TAGAAGAGGATACAAGGA------------AATATA--TCTAAATTGCTATGTTCACTATGCTCAGTGATAAGATTAAAGGTACATATTTTTCCCCT----TTGATTTTCAACATTTTCTCAAACGTGCTTCTATTACTTTTACAAATTATCATAATCAGAGACGTAATACCCTGAGTCACCTGTTGTGTTTACTAAGACAACAAAGTACTTTGGGGTTTC-----TTTGCTCCTTGCAGACAGGGTGGT s panTro1.chr6 161423570 527 + 161576975 -CACT-------TTTTAAAACCTGATTTGTCTGTCACCATGCTGGAATGTCAGTGCCTCTGTGGCATCACCTGTCTCTCTTGCCACCGCCTGGCTCAG-GCCTGGCACGTGCTCAGTGAGTTTGC--AAGACTGAAGGGCACCCCTG-CCTCCACGTCAAATCCCAGGGGTCCCTCACGGCGCTGCGTGTGGGAA-GATGGAGGCTGAGCCCCAG-GTTGCATGCCATGGTGCTGGCCCTCGCGTATGAAATACACCAGTGA--------------------------------TTATAAAGGTTAGTGAAAAATCTAATTATGAAATTGTACATAAACTATGATTA-ACTCTTTTTGTATA-----------TAGAAGAGGATACAAGGA------------AATATA--TCTAAATTGCTATGTTCACTATGCTCAGTGATAAGATTAAAGGTACATATTTTTCCCCT----TTGATTTTCAACATTTTCTCAAACGTGCTTCTATTACGTTTACAAATTATCATAATCAGAGA---------------CACCTGTTGTGTTTACTAAGACAACAAAGTACTTTGGGGTTTC-----TTTGCTCCTTGCAGACAGGGTGGT s canFam1.chr16 22883613 600 + 60307850 CCATTTTTATTGTTTTTAAACCC-AGTTATAGGTCTCCATACCAGAATGTC--TATTGCTGTTGGAAC------CTCTCTTGGCA----CTTACTTAGCATGCAATATGTTTTCAGCCAGTTGGTTGAAGACTGTAAGACCTTCCTGACTTCCAGCCTCTACGCCATGTGTCTGGCCCTGCATTGCATCCAGGAATGAGGGAGGCTGAGACACAGATTTCCATGCCATG--GCCAGCTCTCAGGTGTGAGGCGCACCAGTGAGAAGTGTGTGGTAACGTGAACAAATGCTTATGGTATATAGGTCACTGTAAAAGCAAAGTACAAGATTATACGTATACTATGATTATATTGGTTTTGTACAAAATATGCATTTAAAAAGGAATATAAAACCCGAAGTGTTTTAATATAACCCCAAAGGGTTATATTAACCATGTTCAGTGGTGAGATTAATGTTTGA-ATTATTCCCCTTGAGTTTGTTTTCAAGATTTTCTCAAATGTGCTTATATTACTTTGACAAATCACCATAATGGAAGAAGCAATTCCCTGCATCACCTCTTGTATTGACTAAGATAGTAAA-------GGGGTGTCTGCTGTTTGCTCTGTAAAGACAGTGTGGT a score=21161.0 s hg17.chr7_random 61995 235 + 778964 GGAACTGAGGGAGACTGCAGCCAGCCCAGTCGTGCCCACCCGGGCTT----------------------GCCACAGAGTTCATGGgccttgggggcttcgtgcattctgctccctgcttagaaacagcctcccccaggccttccccgctccttagcgtggctgacttcctctggtcctttagggctcagctcacccgactcctcccaggaaaagctccccagtcagaggttcctccctctggtccTTTAGGGCTCAG s panTro1.chr6 161424097 257 + 161576975 GGAACTGAGGGAGACTGCAGCCAGCCCAGTCGTGCCCACCCGGGCTTGGGCTGGCTGTGAGCCCACAGAGCCACAGAGTTCATGGgccttgggggcttcgtgcattctgctccctgcttagaaacagcctctcccaggccttccccgctccttagcgtggctgacttcctctggtcctttagggctcagctcaccggactcctcccaggaaaagctccccagtcagaggctcctccctctggtccTTTAGGGCTCAG a score=46744.0 s hg17.chr7_random 62230 516 + 778964 CTCACCAGACTCCTCCCAGGAAAAACTCCCCAGTTAGAGGCTCCTCCCACGTGCTTTTATTTAGCTCCCTCAGCAGCTACTATGCGTCTTCATGACCTGTTTACCTCGTT---CCCCAGGGAAGTCACAGGCTCCCTGAAGACAGGAGCCGTGTTTTGGTCACGGCCTCCTCGCACTGGCCTGCAGGAGAAGCTCCAGGGATACGTGAACGGATAGATGAGTGAGAGGCTTTGGGTGCCCTGAGCTC--GAGTTTGTGTTTTAAGGCAAGTCATATCACTTATCAGTCATATCACTGCAGAATGAGAATGCTAAATTTCTCTTGTTCTTACATCCTGTATTTGCACAGCACTTTCACGTTATCACGTGTGACAGAAGGAAGACAGCCTCAGCCTCCCGGCTCAGCCACTGGGTCTAGTCCATTGGGCACAAATACAAACCTGCAAGGTGTGTGTGGCTCGGAGAGGGGCCCCTCAATGTCAGCAACAAGGGGGGATTTCAGAAGGTTCCAGTCtccttctt s panTro1.chr6 161424558 521 + 161576975 CTCACCAGACTCCTCCCAGGAAAAGCTCCCCAGTTAGAGGCTCCTCCCACGTGCTTTTATTTAGCTCCCTCAGCAACTACTGTGCGTCTTCATGACCTGTTTACCTCGTTGCTCCCCAGGGAAGTCACAGGCTCCCTGAAGACAGGAGCCGTGTTTTGGTCACGGCCTCCTCGCACTGGCCTGCAGGAGAAGCTCCAGGGATACGTGAACGGATAGATGAGTGAGAGGCTTTGGGTGCCCTGAGCTCATGAGTATGTGTTTTAAGGCAAGTCGTATCACTTATCAGTCATATCACTGCAGAATGAGAATGCTAAATTTCTCTTATTCTTACATCCTGTATTTGCACCGCACTTTCACGTTATCACGTGTGACAGAAGGAAGACAGCCTCAGCCTCCTGGCTTGGCCACTGGGTCTAGTCCATTGGGCACAAATACAAACCTGCAAGGTGTGTGTGGCTCCGAGAGGGGCCCCTCAATGTCAGCAACAAGGGGGGATTTCAGAAGGTTCCAGTCtccttctt a score=76450.0 s hg17.chr7_random 62746 564 + 778964 acctctcttctctacttcttaccttccttcctttatttattcctctttt-ccttccttTTTCAAATATTTTGAGCTCCTGCTGTTTCTATGCCAGAGAAGGAGGCAGGCCCCAGCGAGACCGAGAGAG-------------------CTGAGGGCCCGCTGGCCTGGAGGCCTCCGGAAGG-CAGCTCCTTCACCACTTTT---------GATCCCCCTAAAATGTCAACAGACTTTAACCACTGATTATTTGTCATTTAGACCCAAGTGCTAATGAATCTGTCCCT--GGTGAAGTTCAGGATGGGCCCCCGGGAGGACCTCGGGCCTGGGGGAGCTG----------GTGTGTGG-----GGTTCTTCCCAAGCATGGCTGAGCATGGAGACGG----TGGCCATAGCT------GAGAGCAGGACGCTCCCC------------ACCCTTCTTTCCTCACCTTCTAACTGGAAGAGGGGTTCAAGCCCTGCTTGGTGAGGGACTTAAGAAGGTGGACAGAGGCTGCCTCAGCAGGCGTGGGTCTCTCCT-CTCTCCACACCTGTGCACCAAGTGGCTCGGCTTCTGTCTGATTCACACAGTGCGTGTCTGTGGGCAGTTTTGTGTGAAAAC s panTro1.chr6 161425079 565 + 161576975 acctctcttctctccttcttaccttccttcctttatttattcctctttttccttccttTTTCAAATATTTTGAGCTCCTGCTGTTTCTATGCCAGAGAAGGAGGCAGGCCCCAGCGAGACCGAGAGAG-------------------CTGAGGGCCCGCTGGCCTGGAGGCCTCCGGAAGG-CAGCTCCTTCACCACTTTT---------GATCCCCCTAAAATGTCAGCAGACTTTAACCACTGATTATTTGTCATTTAGATCCAAGTGCTAATGAATCTGTCCCT--GGTGAAGTTCAGGACGGGCCCCCGGGAGGACCTCGGGCCTGGGGGAGCTG----------GTGTGTGG-----GGTTCTTCCCAAGCATGGCTGAGCATGGAGACCG----TGGCCATAGCT------GAGAGCAGGACACTCCCC------------ACCCTTGTTTCCTCACCTTCTAACTGGAAGAGGGGTTCAAGCCCTGCTTGGTGAGGGACTTAAGAAGGTGGACAGAGGCTGCCTCAGCAGGCGTGGGTCTCTCCT-CTCTCCACACCTGTGCACCAAGTGGCTCGGCTTCTGTCTGATTCACACAGTGCGTGTCTGTGGGCAGTTTTGTGTGAAAAC s canFam1.chr16 22885708 607 + 60307850 ACATTTCTGTTACCCTGTTCTCCTTCCTTTCTTCCCTTTCCCCT------TCTTCCTTCATCAAATTCTGTGAGCTCATGTCATCTGTTTACCAGAGAAAGAGACAGGCCCCAGAAGGTCAGAGCGAGTGTCCCTAGTATCTGGAAACTGAGAGTCCCCTGGCCTCAGATATGCCGGAGGGACAGCTCCTTTATCCCCTTCAGAACCTCAGGTCCTCTAGAAGTGCCAGTGAGCTTTTGATCTTTTGTATTAGTCACTTGGGCCTATGTGCTAGTTAATTTGTCACTTGGGTCAACCTCAGGATCACTTGCCACAGTAACCCCTGGCTTAGGGGAGCTGCTCAGAGCATGGCTGTGGACAGTGGGCCTCCTGGAGGATAGGCCAGCAGGCAGACAGAGATGGGCAATACCTTCATGGAAGCCCTGAACTCTCCTCCTGTGTGGGCCACCCCTTCTGTCCATGTCTTCCAAATAGAAGA---GTTCTCAACATGGTGGGCTGAGGGTTTGACCAAG-----AGAGG----------AGGC-TGGGTCTCTCCTCCCCTCCATGCATGTAAACTGAGAGCCTCAGCT--TGTCTGTTTTACACAGTGCACTTCTGTGGGCGATTTAACTTGAACAC a score=0.0 s hg17.chr7_random 63310 7 + 778964 ACATCTG a score=564.0 s hg17.chr7_random 63310 6 + 778964 ACATCT s panTro1.chr6 161425644 6 + 161576975 ACATCT a score=100.0 s hg17.chr7_random 63316 1 + 778964 G s panTro1.chr6 161425758 1 + 161576975 G a score=75389.0 s hg17.chr7_random 63317 617 + 778964 CTGCATAAGAAACG-GTGGGTGTGGGTAAAAACTGCTGCCAAG--------------------------GGAGCCACAGAGT-GGAGGCCATAGAGCATCTACTGTGTTTCTCTTCAGTTTCACATG--------------------------------AGGCACATGTCACATGCACACACGTGCACACATAACACACTCACACGTGTGTGCAGAAAT---CTCACACACA-GGACATTCCCCCCACCAATGCCATCCCGAACCCACTGAAGTGCTGGAGAGAAGGAGCCACCAACCCTTTCCAGGTGAGTTCCAGGAGTGAAGAGGACTC---------------AGGGCTGCTCAGAGCCTGGTTAG-AGCCACGGACAGAGAACGGAAGCCTCGACTGAGCCGTTAGA--GGCAGCAGCCTCCCACTGTCCCCCAAGTGCGGGGTCCAAGCTCTGCCTCAGTGACCAGGCAGAGCCTCGCCTGGGTCCTGCAGGACTCACACGGTGAGTGGATGCTG-CTGCCACTGCCGTCCGCACCTC-------CACTGgtggtgtttcaggaccagcttgtcaactgt---aacagaaacatatataaaaccagaatccatttctcttcttgagaaataatttaagattaattataattttacagaatgcatagttagta-taactgctgatgagggactgaagGCATCACAT s panTro1.chr6 161425759 649 + 161576975 CTGCATAAGAAACG-GTGGGTGTGGGTAAAAACTGCTGCCAGG--------------------------GGAGCCACAGAGT-GGAGGCCATAGAGCATCTACTGTGTTTCTCTTCAGTTTCACATGCCTAacacacacttgcatgcacgtgcacacacacgcacatgtcacatgcacacacgtgcacacataacacactcacacGTGTGTGCAGAAAT---CTCACACACA-GGACATTCCCCCCATCAATGCCACCCCGAACCCACTGAAGTGCTGGAGCGAAGGAGCCACCAACCCTTTCCAGGTGAGTTCCAGGAGTGAAGAGGACTC---------------GAGGCTGCTCAGAGCCTGGTTAG-AGCCACGGACAGAGAACGGAAGCCTCGAGTGAGCCGTTAGA--GGCAGCAGCCTCCCAGTGTCCCCCAAGTGCGGGGTCCAAGCTCTGCCTCAGTGACCAGGCAGAGCCTGGCCTGGGTCCTGCAGGACTCACACTGTGAGTGGATGCTG-CTGCCACTGCCGTCCGCACCTC-------CACTGgtggtgtttcaggaccagcttgtcaactgt---aacagaaacatatataaaaccagaatccatttctcttcttgagaaataatttaagattaattataattttacagaatgcatagttagta-taactgctgatgagggactgaaggcatcacat s canFam1.chr16 22886315 614 + 60307850 TTAAATAAATGACATATATATATATATATAAACTACTGTTCAGAGATCTTGTTGGGGATGTATCATAATGGAGCCACAAAGTAGGACAGTGCACAGCACTTACTGTGTCCCTCCTCAATCCCACACA-----------------------CTCATGCATATGCATGTG----GTGCACACACGAAAACACCTTGTGCGTTCATGTGGGCGcacacacacacacacacacacacacacacacacacCATCAGTGCTGT-CCAAACCCAATTAAATGTTAGGTCTAAGGACCCACCAGCCCCTTCCAGGTAAGTTCCAGAAGTGAAGTCGATTTACTTCCCATGATCGAAGGGCTACTCGAAGTGTGGTTGTCACCCATGGACAGAGGA-GTAAGCCTCCAGGACGCTTACAGCATGGTGGTACCTCTCCCTCGCCC----AGGGCGTGATC---ATCCTGCTGTCCTGGGCAGGCAGAGTC-AGCCTGGGCCGTGTGGAGCTCACAT--TACATGGGTGCTGTTTGTTACTCCTGCTAGCAAGTCTGTGGCACACGTGTGGTATCTTAG-----GTTTGTCAGCCATGGAAACAGTGAC-----------------------------------------------------atgactttacagaatgcatagctagtactgtctattgattgaagattgaaggtatcactt a score=25888.0 s hg17.chr7_random 63934 290 + 778964 Ctttctttcttttttt----ttttttttgagagtcttgctctgttgcccaggctagagtacagtggcactatcagggctcactgcagccttgacctccctggctcaagtaatcttcccaccttaacctcctgtgtactgggactataggcatacaccacaatgccaggcaaattgaaaaatttttttgtagagctgggagtctcactatgttgcccaggctgctcttgaactcctgggctcaagggattctctcttggcctcaaagggtgctaggattacagtgtgagccC-TAC s panTro1.chr6 161426408 295 + 161576975 ctttctttctttctttctttttttttttgagagtcttgctctgttgctcaggctagagtacagtggcactatcagggctcactgcagcctggacctccctggctcaagtgatcttcccaccttaacctcctgtgtactgggactataggcatacaccacaatgccaggcaaattgaaaaatttttttgtagagatgggagtctcactatgttgcccaggctgctcttgaactcctgggctcaagggattctctcttggcctcaaagggtgctaggattacagtgtgagcccctac a score=212812.0 s hg17.chr7_random 64224 1478 + 778964 ATGCAGGACaaaataaaatcttaagcctgctgaaattatccaa-----cctctcctgtgtcatcaacact-----------------cctctgtcaggatggcctctgagcttccaaagatgaaacatggaaacagggaaacagggtgggtgagcttctccctgggtgacgtgcctctccagctctccttcctggattagacaaatgaggagagaagga-----atatgtcacatcaaagacCCATTACTGCTGTTTGCAATATGCTTTCAAAGCATG-ACATGGAAGTTTGCTGTTTTGTTCATAAGTTTTTATTTagttatgattgtaaaaggaccaaaagttatgcctgtactggtgtgtatacttttcaataaacaattgtgcatttttgataatttttctatacta----tgttctgattgtatttattgaaacataattttg----tttcaactctaataaaaacctacgcttgcttttgtatatctcttacaattatatttttctagtaatttatttttgttgtattttat-----tagtattagcctgtagtgg--cttggcaatt--aaacacagtcaagtcttctgcacagatggattaggaagcattCAGGAGGCCCCATCACGGGC---------------ATCTCTCCATGCAGTCAGTTCCCTGTATGGTGAGCACGTGCACAAGGCAGTTTGGAAGCTCTTGAGGC--AAGACTTTTGAAAATACCCTTGGGGTAT--ATAAGGAGAGTCAGGCCTAATATTTAGTAAATTTAGCTATAAAATAATACAGGGAAGTTCCTGTTTTTATCAGAGTCTAACTGTTCAG-----CATTTTAAAGAAATGGTGCTTTACTTAATTTTTAAGAAAGAGACAGAGCACATG-AAATAAATTGCTGGCAGAGAATTGCCAGAGACATGGAGAAGAATGGTTTTGAGCTTGGGGATTTCTGGGGTTCAGTGCAGATTGTACCTAATCTCC-CACCCTCTGACGAAACTGGACAGAAAGAGTTGATGTTCGGAACCAGGCTCCCACG--ACAGTGAGACACACCTGCGTCTTCTGAGCCATGGGAGGAGTCAAATGTTTTCAGCCAGAAATGTGACCCAATACATCTCAGAAAATGTTCGGCAGTCAGGGGTGGCCCAGGAGGGGCTTCTGTGATCACAGTTACCCT---GACTCGCCTTGGTAAGTGCTCCCTGAACGCGGTGCCCTGGGTGTGGTTTCCTCAATGTTTTCTCCTTTTCA-AACGTGAGCCCCGAGCAGGAGAGAAGGAGCCCAGTCCCT--------CCCAAGGCCGGGCCTCTTTGGGTTTACTGGTGCAAGGAGCTTGGTTGTTCTTTGTGCACGTGGTGAATATCA--TGACCATCTTCTGTGAGGTCCTCGG--GGGCCGTGAGAACAGATTGGATGTGGGTCGAGCATCTGCAAGTTCTGACGCAGGAGCCCTCGCCCACTCGGTCTGGATCAGAAAGTCAGGTAGCCTCAAAAACCATACCAATGTGAAAGGTCCACCC---------TAGGTAT-TTTATTTTAACTCAAGA s panTro1.chr6 161426703 1478 + 161576975 atgcaggacaaaataaaatcttaagcctgctgaaattattcaa-----cctctcctgtgtcatcaacact-----------------cctctgtcaggatggcctctgagcttccaaagatgaaacatggaaacagGGAAACAGGGTGGGTGAGCTTCTCCCTGGGTGACGTGCGTCTCCAGCTCTCCTGCATGGATTAGACGAATGAGGAGAGAAGGA-----ATATGTCACATCAAAGACCCATTACTGCTGTTTGCAATATGCTTTCAAAGCATG-ACATGGAAGTTTGCTGTTTTGTTCATAAGTTTTTATTTagttatgattgtaaaaggaccaaaagttatgcctgtactggtgtgtatacttttcaataaacaattgtgcatttttgataatttttctatacta----tgttctgattgtatttattgaaacataattttg----tttcaactctaataaaaacctatgcttgcttttgtatatctcttacaattatatttttctagtaatttatttttgttgtattttat-----tagtattagcctgtaatgg--cttggcaatt--aaacacagtcaagtcttctgcacagatggattaggaagcattCAGGAGGCCCCATCACGGGC---------------ATCTCTCCATGCAGTCAGTTCCCTGTATGGTGAGCAGGTGCACAAGGCAGTTTGGAAGCTCTTGAGGC--AAGACTTTTGAAAATACCCTTGGGGTAT--ATAAGGAGAGTCAGGCCTAATATTTAGTAAATTTAGCTATAAAATAATACAGGGAAGTTCCTGTTTTTATCAGAGTCTAACTGTTCAG-----CATTTTAAAGAAATGGCACTTTACTTAATTTTTAAGAAAGAGACAGAGCACATG-AAATAAATTGCTGGCAGAGAATTGCCAGAGACATGGAGAAGAATGGTTTTGAGCTTGGGGATTTCTGGGGTTCAGTGCAGATTGTACCTAATCTCC-CACCCTCTGACGAAACTGGACAGAAAGAGTTGATGTTGGGAACCAGGCTCCCACG--ACAGCGAGATGCACCTGCGTCTTCTGAGCCATGGGAGGAGTCAAATGTTTTCAGCCAGAAATGTGACCCAATACATCTCAGAAAATGTTCGGCAGTCAGGGGTGGCCCAGGAGGGGCTTCTGTGATCACAGTTACCCT---GACTCGCCTTGGTAAGTGCTCCCTGAACGCGGTGCCCTGGGTGTGGTTTCCTCAATGTTTTCTCCTTTTCA-AACGTGAGCCCTGAGCAGGAGAGAAGGAGCCCAGTCCCT--------CCCAAGGCCGGGCCTTTTTGGGTTTACTGGTGCAAGGAGCTTGGTTGTTCTTTGTGCACGTGGCGAATATCA--TGACCATCTTCTGTGAGGTCCTCGG--GGGCCGTGAGAACAGATTGGATGTGGGTCGAGCATCTGCGAGTTCTGACGCAGGAGCCCTTGCCCACTCCGTCTGGATCAGAAAGTCAGGTAGCCTCAAAAACCATACCAATGGGAAAGGTCCACCC---------TAGGTAT-TTTATTTCAACTCAAGA s canFam1.chr16 22886940 1469 + 60307850 gtacagttaaaaagaatatcctaagcctgctaaaattatttaatatctcttctcccatcctatcagcatcccataatatccctgaaacctctgtcagactggcgtctaggtttctaaagaccaagtatgaaagcaattca--------ggtgtacatcacccc--------tgaattgtcatctctcctgctcagagtagatacacaagggaagaaggaaattcattcatcgtctctaaga-------------tttaaaat-tgctttcaaagcatgcatgtgggcaaccgctgt----ttcctaagttttcatgtagctgtgactgcagaatggccaagagccatccgtgtgccaacatgtacatcctcagggaattacttatacatttttggtaatttgtctgtactgtgcttgttctgtttatatttattgaaacatgattttatatcttttgaatctcataaaaacgagggcttgcttttgtatatatttttaaattttgcttttctggtaatccacttttactgtatcttataatagcagtattggcctgtaatggaacttggaaattagaaatataattgagtcttctccatagatggtttgggaaacactCAGGATTCCCCACCGTGAGCTCTGAGTGGTGTGAGATGTCTCCAGAATGACTGTCCCTTGTAAAGTG-------------GGCAGTTTGAGGACTCACAAACCTAATGAGCTTAGAAAATATCTCTGGGGTGGCAGTAAAAGAGGCCAGGCCTAATATTTAGT-AATTTAGCTACAAAATGATACAAAGAAGTTTC--ACTTTATCAAAGTTCAGCAATTCAGAACTTTATTTCAAAGGAATGGGGCTTTACTTGACTTTTCAG-AGGAGGCAGATGACCTGAAAATTAGCTGGCCGCAGAGCACTGTCAGAGGTGCTGGAGAGAAGAGCTTCGAGCTGGGAGACTTCAGGGG-TCTGTGCAGGTTCCACGTAACCCCCACACTTTCTA-------TGAGCAGTGAGAATTAATGTTCTGGGGCATGCCCCCAAATCACAGCCAGATGCCCCTGTGCCTTTGGATTCAT-ACAGAGTCCAAATGTGTGCAGCCAGAAA-GTGAACCGATCCATTTCAGAAAGTGTTCAGTGATGTGTGGTGACCCAGAAAGTGCCCGGGTGATCCCAGGGTCCCCTCGGGCTCCCCTCTGTAGGGAT-------------TGCCCTGTGTGTGGGCTTCCTGAAATCCTCTCCTCCACAGAACCTGGGGTTAGTGCAGGAT-GCAGAAGGTCACTTCTTCTTCCTGCCCTGAGGCCTGGCTAAATCGGATTTATTGTTGCAACGAGCTTGTTTGTTTTGTCT-TGTTTGGCAAATAGGAAGTGACTGCCTGGTGTGAGGTCCTCTGCTGGACAGGGGGGACACAGGCGAGGTGAA------GTTTGC--GTTGTGACAGGGGA-----------------------CAGAGAA-CAGATAGTTCTATCAGTACTCTCTGTTCCACTGGTCTGCCCAGAAATCCATAGGAATGTTCACTTAAACACCAAA a score=25736.0 s hg17.chr7_random 65702 178 + 778964 CACAAAACTACATTCTCTTGCCCATATTTTAATGTTAAGCCATAACTTTTCCTTAAATATTTTTTTGACTGAAATTCTACACCACATTTTCTGGAATAAATCACATCCACAAAGCTTTATTTATACTACTC---ATTTTGTA------AAAATAAAATAGAACTTAAGGACATTGAGGTAAAGCCAT s panTro1.chr6 161428181 177 + 161576975 CACAAAACTACATTCTCTTGCCCATATTTTAATGTTGAGCCATAACTTTTCCTTAAATATTTTTTTGACTGAAATTCTACACCAC-TTTTCTGGAATAAATCACATCCACAAAGCTTTATTTATACTACTC---ATTTTGTA------AAAATAAAATAGAACTTAAGGACATTGAGGTAAAGCCAT s canFam1.chr16 22888605 169 + 60307850 CACCAAAGTACATTCACTTTCC-----------ATTCAACCCTA---TTCCTTGACAAAGTTTGCTGATTGGCACTTTCCATGTC-TTTCCTGGAATAATCCACATCTATCTA---TCATTTATGCTGTCCGCTATTGTGTGTGCATCAAAATGAAAAAGAATTTAAGGACATTGAGGTAAAACCAT a score=265.0 s hg17.chr7_random 65880 10 + 778964 CTACAAACAt s canFam1.chr16 22888774 10 + 60307850 CTGAGAACAA a score=1965.0 s hg17.chr7_random 66188 21 + 778964 cTACAAACATTTTTTGTTAGC s panTro1.chr6 161428358 21 + 161576975 CTACAAACATTTTTTGTTAGC a score=50269.0 s hg17.chr7_random 66209 403 + 778964 TTTATAATATTTTAAAATCT----CAGAAGTTTTCCCATATCTATTCAATAAGC--ATTTTTT-AGCAGTTTTCTTTTATTCTTTCC-----AAAGCATTCAGTTTTGtttaataaataaattagttattaaacaaaaattgttttatttttCCATTTATATTTCTCCAGTGTTTGTGCTGTCAA-TACTGTAATTGTTTAGTAAACTTGGGCACACACACATTTAGGAACTAGCGTGAGACTTTTGAGAGATGGCAACCCCA--CAGGTGGG-----GGGTCATAGCTGCCACTGAGGCTGCTGGCCC-TGGCATTCTGTTTGCCTCAGACCAAGGT---CCTATGAATTGGGCTTTAAAAGCTTCTATTGTAAGGAAATGTATCATAATGGTGCTTCTAGTGGGGGCAGAAATGAGGAGATGGAC s panTro1.chr6 161428379 408 + 161576975 TTTATAATATTTTAAAATCTTTCTCAGAAGTTTTCCCATATCTATTCAACAAGC--ATTTTTTTAGCAGTTTTCTTTTATTCTTTCC-----AAAGCATTCAGTTTTGtttaataaataaattagttattaaacaaaaattgttttatttttCCATTTATATTTCTCCAGTGTTTGTGCTGTCAA-TACTGTAATTGTTCAGTAAACTTGGGCACACGCACATTTAGGAACTAGCGTGAGACTTTTGAGAGATGGCAACCCCA--CAGGTGGG-----GGGTCATAGCTGCCACTGAGGCTGCTGGCCC-TGGCATTCTGTTTGCCTCAGACCAAGGT---CCTATGAATTGGGCTTTAAGAGCTTCTATTGTAAGGAAATGTATCATAATGGTGCTTCTAGTGGGGGCAGAAATGAGGAGATGGAC s canFam1.chr16 22888789 385 + 60307850 TTTA--------AAAAATCTTTTACAGAATTTTGCTAAACTGACTTAAACGAGCTAATTTTTTTAGCAATTTGCTTTTATTAATTCTTTAAAAAAACATTC-------------AAAGTAGTTACTATTTAAAAAAAATCCTTTTTAGTTTTCCATTCATATGCCTTAGTTTTATGTGCTATTAACTGGCGGTGCTGTTCAGTGAGCACAGGC-------------------AGCATGCACCTGCTGAGGAGCACCGACCGCAGGCCGGAGGGAGTGAGGGACGTGACT-CCACGAAGGTCCCTGGCTCACTGCTCGCTGCTCACCCTGGGCTTCAATCAGCTTGTGGTTTTGGCCTAAACAGCTTCTATTGTAAAGAAATGTGTCTTAA-GAAGACTCTTGTGCATGCAAAAATGCGGAAGTGGGC a score=26754.0 s hg17.chr7_random 66612 293 + 778964 TTAGCAAAGTGGACGTCCCTGGCCAAGTCCAGTCTGAGTCAATAGCCAGTGTGCGCTGTGTTCCCTGCAAGGACTTCCCGGTGATCCCGGCCACATGTGCAGGGCCCTGGAAGCAGAGCACGGAGCGTGGGTCTGACCCACAGGGCCAGGGGCCCCAAAGGGTGTGGAGTCAAGGAGGGCCCTGATCCAATCCCTTTTATTTTGAAAAACCCAGCAGTGGGGTGCAGGTGGAGAAGGAGGGACAGAGACCAGTCAGAAGGCCCAGACCCCTACCAAGGGAGGGAAGGTTCTGC s panTro1.chr6 161428787 293 + 161576975 TTAGCAAAGTGGACGTCCCTGGCCAAGTCCAGTCTGAGTCAACAGCCAGTGTGCGCTGTGTACCCTGCAAGGACTTCCTGGTGATCCCGGCCACATGTGCAGGGCCCTGGAAGCAGAGCACGGAGCGTGGGTCTTACCCACAGGGCCAGGGGCCCCAAAGGGTGTGGAGTCAAGGAGGGCCCTGATCCAATCCCTTTTATTTTAAAAAACCCAGCAGTTGGGTGCAGGTGGAGAAGGAGGGACAGAGACCAGTCAGAAGGCCCAGACCCCTGCCAAGGGAGAGAAGGGTCTGC a score=14623.0 s hg17.chr7_random 66905 107 + 778964 ATCCAAACCACAGCCGCAGTGCCAGAGATGGAGGGATGACTCACGGCCACGGGGGGGTA----AACCCTCCAA-ACCTGGGCCCCGCTGGGCGTGAGAAGTGAGGGGGAGGG s panTro1.chr6 161429080 107 + 161576975 ATCCAAACCACAGCCGCAGTGGCAGAGATGGAGGGATGACTCACGGCCACGGGGAGGTA----AACCGTCCAA-ACCTGGGCCCCGCTGGGCGTGAGAAGAGAGGGGGAGGG s canFam1.chr16 22889223 111 + 60307850 ATCCAAACGGGAGCCACAGGGACAGAGAGGAAGGGACAGAT-GCGCCCACAGGAAGGAATCCCAAGTCTCTAGCAGCGGAGGCTCTAGGGGCAGAAGCAGCGAGGGAGACGG a score=2734.0 s hg17.chr7_random 67012 30 + 778964 GAGATCTCTGGTAGCTACCAGGTATTGGAT s panTro1.chr6 161429187 30 + 161576975 GAGGTCTCTGGTAGCTACCAGGTATTGGAT a score=15577.0 s hg17.chr7_random 67042 109 + 778964 CCAGCCAACGACTCAGAGCTCATTCTGTCCACCAAGAGAGAAACGAGGGGCCTCGTACTGAGGATGTGAGTGAATGGCTGACTCTCCTGAGGGGCAGACGGCGAGGGCA s panTro1.chr6 161429217 109 + 161576975 CCAGCCAACGACTCAGAGCTGATTCTGTCCGCCAAGGGAGAAACAAGGGGCCTCGTACTGAGGATGCGAGTGAATGGCTGACTCTCCTGAGGGGCAGACAGCAAGGGCA s rn3.chr7 111447030 109 - 143082968 CTAGCTGATGAACGAGATCGCATTCTGTCCAACTCTGGGGGACAAAGTGGCTACTTACTGCATGTGGTGGCCAAGAGCTGACTTTGTTAGAGGGCAGACAGTGAATGCA a score=28546.0 s hg17.chr7_random 67151 324 + 778964 CTCCATTCAGGCACTTACTTACGTTATCACCATCAAGCTGCAAAAAGCCCCT-AAAAATatttgtatgagcaaagaaactaaggctggaggcgaggtaacccaaagactgcacctccaggtaggaccaaagccaggactgaggctcagcttgtcagaccccgaagtccacaatttccaGTTTATGATCGTCCCATGAGTGACCACAGGACACAGGCACAGCCAGTGGAACAAGGGGCCCTAAGAGGCAGTGCTCACGGAAGACACAAGGGACCCTACAGTCACTGTGCTCCTGGGGGGATGGCCTGGAGCCCAGGACACCCCACG s panTro1.chr6 161429326 325 + 161576975 CTTCATTCAGGCATTTACTTATGTTATCACCATCAAGCTGCAAAAAGCCCCTAAAAAATATTTGTATGAGCAAAGAAACTAAGGCTGGAGGCGAGGTAACCCAAAGACTGCACCTCCAGGTAGGACAAAAGCCAGGACTGAGACTCAGCTTGTCAGACCCTGAAGTCCACAATTTCCAGTTTATGATCTTCCCATGACGGACCACAGGACACAGGCACAGCCACCGGAACAATGGGCCCTAAGAGGCAGTGCTCACGGAAGACACAAGGGACCCTACAGTCACTGTGCTCCTGGGGGGATGGCCTGGAGCCCAGGACACCCCACG a score=6607.0 s hg17.chr7_random 67475 51 + 778964 CCTGAGGAGACAGCCTGGGACCAGGATGTCCTATCCATGAGGAGACGGACT s panTro1.chr6 161429651 51 + 161576975 CCTGAGGAGATAGCCTGGGACCAGGATGCCCTATCCATGAGGAGATGGCCT s rn3.chr2 148444767 48 + 258222147 CCTGAGCAG---GTCTGGGTCCTGGCTGTCTTCTCTGCCCTGAGCAGGTCT a score=7063.0 s hg17.chr7_random 67526 45 + 778964 GGGACCAGGATGCCCTATCCATGAGGAGACGGCCTGGGACCAGGG-- s panTro1.chr6 161429702 45 + 161576975 GGGACCAGGATGCCCTATCCATGAGGAGATGGCCTGGGACCAGGG-- s mm5.chr17 22628419 45 + 93559791 GGGGCTGGGATGCCCTTCCCGTAGGGGCTCTTCCAGGGGCTGGGA-- s rn3.chr2 148444815 47 + 258222147 GGGTCCTGGCTGTCTTCTCTGCCCTGAGCAGGCCTGTGTCCTGTCTG a score=7966.0 s hg17.chr7_random 67571 46 + 778964 TGCCCTTTCCATG--AGGAGACGGCCTGGGACCAGG--GTGCCCTATCCA s panTro1.chr6 161429712 46 + 161576975 TGCCCTATCCATG--AGGAGATGGCCTGGGACCAGG--GTGCCCTATCCA s mm5.chr17 22628464 46 + 93559791 TGCCCTTCCCGTA--GGGGCTCTTCCAGGGGCTGGG--ATGCCCTTCCCG s rn3.chr2 148444862 50 + 258222147 TGTCTTCTTTGTGCCCGAAGCAGGCCTGTGTCCTGGCTGTGTCTTCTCTG a score=6445.0 s hg17.chr7_random 67617 40 + 778964 ---TGAGGAGACGGCCTGGGACCAGGGTGCCCTTTCCATGAGG s panTro1.chr6 161429653 40 + 161576975 ---TGAGGAGATAGCCTGGGACCAGGATGCCCTATCCATGAGG s mm5.chr17 22628510 40 + 93559791 ---TAGGGGCTCTTCCAGGGGCTGGGATGCCCTTCCCGTAGGG s rn3.chr2 148444912 40 + 258222147 CCCTGAGCAG---GTCTGGGTCCTGGCTGTCTTCTCTGCCCTG a score=91.0 s hg17.chr7_random 67657 1 + 778964 A s rn3.chr2 148444952 1 + 258222147 A a score=91.0 s hg17.chr7_random 67657 1 + 778964 A s panTro1.chr6 161429693 1 + 161576975 A a score=3226.0 s hg17.chr7_random 67658 34 + 778964 GACGGCCTGGGACCAGGATGCGCTATCCATGAGG---- s panTro1.chr6 161429694 34 + 161576975 GATGGCCTGGGACCAGGATGCCCTATCCATGAGG---- s rn3.chr2 109776317 34 - 258222147 GAAGACCTGGACCCAGG----CCTGCCCAGGGCAGAGA a score=10760.0 s hg17.chr7_random 67692 70 + 778964 AGACAGCCTGGGACCAGGGTGCCCTATCCAT----GAGGAGACGGCCTGGGACCAGGATGCCCTATCCATGAGG---- s panTro1.chr6 161429728 70 + 161576975 AGATGGCCTGGGACCAGGGTGCCCTATCCAT----GAGGAGACAGCCTGGGACCAGGATGCCATATCCATGAGG---- s mm5.chr17 22628480 70 + 93559791 GCTCTTCCAGGGGCTGGGATGCCCTTCCCGT----AGGGGCTCTTCCAGGGGCTGGGATGCCCTTCCCGTAGGG---- s rn3.chr2 109776351 70 - 258222147 AGACAGCCAGGACCCAGG----CCTGCCCAGGGCAGAGAAGACAGCCAGGACCCAGG----CCTGCCCAGGGCAGAGA a score=10597.0 s hg17.chr7_random 67762 150 + 778964 AGACGGCCTGGGACCAGGATGCCCT-ATCCATGAGGAGACGGCCTGGGACCAGGATGCCCT-ATCCATGAGGAGACGGCCTGGAGCCCAGGACACCCCACGCCTGAGGAGACGGCCTGGGACCAGGATGCCCTATCCAT------GAGGAGACGGCCT s panTro1.chr6 161429798 114 + 161576975 AGACGGCCTGGGACCAGGATGCCTTGAGCC-TGAGGAGACGGCCTGGGACCAGGATGCCCTGAT-------------------------------------CCTGAGGAGACAGCCTGGGACCAGGATGCCCTATCCAT------GAGGAGACGGCCT s rn3.chr2 109776421 151 - 258222147 AGACAGCCAGGACCCAGGCCTGCTCAGGGC-AGAGAAGACAGCCAGGACCCAGGCCTGCCC-AGGGCAGAGAAGACAGCCAGGA-CCCAGGCCTGCCCAGGGCAGAGAAGACAGCCAGGACCCAGG----CCTGCCCAGGGCAGAGAAGACACAACCA a score=4762.0 s hg17.chr7_random 67827 34 + 778964 ----TGAGGAGACGGCCTGGAGCCCAGGACACCCCACG s panTro1.chr6 161429617 34 + 161576975 ----TGGGGGGATGGCCTGGAGCCCAGGACACCCCACG s rn3.chr2 109776482 37 - 258222147 GGGCAGAGAAGACAGCCAGGA-CCCAGGCCTGCCCAGG a score=9706.0 s hg17.chr7_random 67912 60 + 778964 GGGACCAGGATGCCCTATCCAT----GAGGAGACGGCCTGGGACCAGGATGCCCTATCCATGAG---- s panTro1.chr6 161429912 60 + 161576975 GGGACCAGGATGCCCTATCCAT----GAGGAGACGTCCTGGGACCAGGATGCCCTATCCATGAG---- s mm5.chr17 22628419 60 + 93559791 GGGGCTGGGATGCCCTTCCCGT----AGGGGCTCTTCCAGGGGCTGGGATGCCCTTCCCGTAGG---- s rn3.chr2 109776572 60 - 258222147 GGACCCAGG----CCTGCTCAGGGCAGAGAAGACAGCCAGGACCCAGG----CCTGCTCAGGGCAGAG a score=8476.0 s hg17.chr7_random 67972 48 + 778964 GAGACGGCCTGGGACCAGGATGCCCTATCCATGAGGAGACGGCCTGGG s panTro1.chr6 161429972 48 + 161576975 GGGACGGCCTGGGACCAGGATGCCCCATCCATGAGGAGAGGGTCTGGG s mm5.chr17 22628479 48 + 93559791 GGCTCTTCCAGGGGCTGGGATGCCCTTCCCGTAGGGGCTCTTCCAGGG s rn3.chr2 148444624 48 + 258222147 GAGCAGGTCTGGGTCCTGGCTGTCTTCTCTGCCCTGAGCAGGTCTGGG a score=4172.0 s hg17.chr7_random 68020 23 + 778964 ACCAGGGTGCCCTTTCCATGAGG s panTro1.chr6 161429985 23 + 161576975 ACCAGGATGCCCCATCCATGAGG s mm5.chr17 22628527 23 + 93559791 GCTGGGATGCCCTTCCCGTAGGG s rn3.chr2 148444672 23 + 258222147 TCCTGGCTGTCTTCTCTGCCCTG a score=1605.0 s hg17.chr7_random 68043 12 + 778964 AGACGGCCTGGG s panTro1.chr6 161430008 12 + 161576975 AGAGGGTCTGGG s rn3.chr2 148444695 12 + 258222147 GGCAGGCCTGTG a score=244.0 s hg17.chr7_random 68055 42 + 778964 ACCAGG--GTGCCCTTTCCATGA--GAAGACGGCCTGGGACCAGGG s rn3.chr2 148444707 46 + 258222147 TCCTGTCTGTGTCTTCTTTGTGCCCGAAGCAGGCCTGTGTCCTGGC a score=8543.0 s hg17.chr7_random 68097 79 + 778964 -----------TGCCTTGAGCCTGAGGAGATGGCCTGGGACCAGGATGCCCT----ATCCATGAGGAGACAGCCTGGGACCAGGGTGCCCTATC s panTro1.chr6 161429817 79 + 161576975 -----------TGCCTTGAGCCTGAGGAGACGGCCTGGGACCAGGATGCCCT---GATCC-TGAGGAGACAGCCTGGGACCAGGATGCCCTATC s rn3.chr2 148444753 81 + 258222147 TGTGTCTTCTCTGCCCTGAGCA---------GGTCTGGGTCCTGGCTGTCTTCTCTGCCC-TGAGCAG---GTCTGGGTCCTGGCTGTCTTCTC a score=3812.0 s hg17.chr7_random 68176 86 + 778964 CATGAGGAGACGGCCTGGGACC---AGGATGCCC----TGTCCATG----AGGAGACGGCCTGGGACCAGG--ATGCCCTATCCATGAGGAGACGGCCT-- s panTro1.chr6 161429896 86 + 161576975 CATGAGGAGACGGCCTGGGACC---AGGATGCCC----TATCCATG----AGGAGACGTCCTGGGACCAGG--ATGCCCTATCCATGAGGGGACGGCCT-- s rn3.chr2 148444834 92 + 258222147 TGCCCTGAGCAGGCCTGTGTCC---TGTCTGTGT----CTTCTTTGTGCCCGAAGCAGGCCTGTGTCCTGGCTGTGTCTTCTCTGCCCTGAGCAGGTCT-- s fr1.chrUn 52441421 78 - 349519338 CAAAAGGAGGCCGCTGGCGCCCTAAAGGAGGCCCCTGGCACCCTAA----AGGAGGCCGCTGGCGCCCTAA-------------------AGGAGGCCCCT a score=6426.0 s hg17.chr7_random 68262 38 + 778964 GGGACC----AGGATGCCC----TATCCATGAGGAGACGGCCTGGG s panTro1.chr6 161429982 38 + 161576975 GGGACC----AGGATGCCC----CATCCATGAGGAGAGGGTCTGGG s mm5.chr17 22628419 38 + 93559791 GGGGCT----GGGATGCCC----TTCCCGTAGGGGCTCTTCCAGGG s rn3.chr2 148444926 38 + 258222147 GGGTCC----TGGCTGTCT----TCTCTGCCCTGAGCAGGTCTGGG s fr1.chrUn 52441499 46 - 349519338 GGCACCCTAAAGGAGGCCCCTGGCACCCTAAAGGAGGCCGCTGGCG a score=13337.0 s hg17.chr7_random 68300 93 + 778964 ACC----AGGATGCCCTATCCATGAGGAGACGGCCTGGGACC----AGGGTGCCCTTTCCATGAGGAGACGGCCTGGGACC----AGGGTGCCCTTTCCATGAGG s panTro1.chr6 161429670 93 + 161576975 ACC----AGGATGCCCTATCCATGAGGAGATGGCCTGGGACC----AGGATGCCCTATCCATGAGGAGATGGCCTGGGACC----AGGGTGCCCTATCCATGAGG s mm5.chr17 22628457 93 + 93559791 GCT----GGGATGCCCTTCCCGTAGGGGCTCTTCCAGGGGCT----GGGATGCCCTTCCCGTAGGGGCTCTTCCAGGGGCT----GGGATGCCCTTCCCGTAGGG s rn3.chr2 148444964 93 + 258222147 TCC----TGGCTGTCTTCTCTGCCCTGAGCAGGCCTGGGTCC----TGGCTGTCTTCTCTGCCCTGAGCAGGCCTGGGTCC----TGGCTGTCTTCTCTGCCCTG s fr1.chrUn 52441545 102 - 349519338 -CCCTAAAGGAGGCCCCTGGCTAAAGGAGGC-CCCTGGCACCCTAAAGGAGACCCCTGGCTAAAGGAGGC-CCCTGGCACCCTAAAGGAGGCCCCTGGCTAAAGG a score=2511.0 s hg17.chr7_random 68393 135 + 778964 AGACGGCCTGGGACCAGGGTGCCCTTTCCATGAGAAGACGGCCTGGGACC--AGGGTGCCTTGAGCCT----GAGGAGATGGCCTGGGACCAGGATG------CCCT---ATCCATGAGGAGACAGCCTGGGACC----------AGGATGCCCTATCCA---- s panTro1.chr6 161429763 135 + 161576975 AGACAGCCTGGGACCAGGATGCCATATCCATGAGGAGACGGCCTGGGACC--AGGATGCCTTGAGCCT----GAGGAGACGGCCTGGGACCAGGATG------CCCTG--ATCC-TGAGGAGACAGCCTGGGACC----------AGGATGCCCTATCCA---- s rn3.chr2 148445057 106 + 258222147 GGCAGGCCTGGGTCCTGGCTGTGTCTTCTTTG------------------------TGCCCTGGGCA-------------GGCCTGTGTCCTGGTTGTGTCTTCTCT---GCTC-TGAGCAG---GTCTGGGTCC----------TGGCTGTCTTCTCTG---- s fr1.chrUn 52441647 144 - 349519338 ---------AGGCCCCTGGCACCCT--------AAAGGAGGCCCCTGGCTAAAGGTGGCCCCTGGCACCCTAAAGGAGGCCGCTGGCACCCTAAAGGAGGC--CCCTGGCACCC-TAAAGGAGGCCCCTGGCACCCTAGCCTCCTAGGAGGCCTCTGGCACCCT a score=-486.0 s hg17.chr7_random 68528 5 + 778964 TGAGG s panTro1.chr6 161429653 5 + 161576975 TGAGG s rn3.chr2 148445166 2 + 258222147 TG--- s fr1.chrUn 52441791 5 - 349519338 AAAGG a score=1223.0 s hg17.chr7_random 68533 54 + 778964 AGACAGC--CTGGGACC----AGGATGCCCTATCCATG----AGGAGACAGCCTGGGACCAGGA--- s panTro1.chr6 161429658 54 + 161576975 AGATAGC--CTGGGACC----AGGATGCCCTATCCATG----AGGAGATGGCCTGGGACCAGGA--- s mm5.chr18 43158597 54 - 91083707 AAACAGA--GCTGTACT----AGAAGATACATTCTATC----AGGAAACAGAGCTGTACTAGAA--- s rn3.chr2 148445168 54 + 258222147 GGCAGGC--CTGGGTCC----TGGCTGTCTTCTCTGCC----CTGAGCAGGTCTGGGTCCTGGC--- s fr1.chrUn 52441796 64 - 349519338 ---AGGCCTCTGGCACCCTAAAGGAGGCCTCTGGCACCCTAAAGGAGGCCGCTGGCGCCCTAAAGGA a score=684.0 s hg17.chr7_random 68587 56 + 778964 TGCCCTATCCATGAGGAGACAGCCTGGGACC----AGGATGCCCTATCCA----TGAGGAGACA s panTro1.chr6 161429747 56 + 161576975 TGCCCTATCCATGAGGAGACAGCCTGGGACC----AGGATGCCATATCCA----TGAGGAGACG s mm5.chr18 43158651 56 - 91083707 GATACATTCTATCAGGAAACAGAGCTGTACT----AGAAGATACATTCTA----TCAGGAAACA s rn3.chr2 148445222 56 + 258222147 TGTCTTCTCTGCCCTGGGCAGGCCTGGGTCC----TGGCTGTCTTCTCTGCCC-TGGGCAG--- s fr1.chrUn 52441860 63 - 349519338 -GGCCCCTGGCTAAAGGAGGCCCCTGGCACCCTAAAGGAGGCCCCTGGCACCCTAAAGGAGGCC a score=-1467.0 s hg17.chr7_random 68643 20 + 778964 GCCTGGGACC----AG--GATGCCCT--------- s panTro1.chr6 161429803 20 + 161576975 GCCTGGGACC----AG--GATGCCTT--------- s mm5.chr18 43158707 20 - 91083707 GAGCTGTACT----AGAAGATACA----------- s fr1.chrUn 52441923 32 - 349519338 -GCTGGCACCCTAAAG--GAGGCCCCTGGCACCCT a score=3724.0 s hg17.chr7_random 68663 29 + 778964 -ATCCATGAGGAGACGGCCTGGGACC----AGGA s panTro1.chr6 161429788 29 + 161576975 -ATCCATGAGGAGACGGCCTGGGACC----AGGA s mm5.chr18 43158727 29 - 91083707 -TTCTATCAGGAAACAGAGCTGTACT----AGAA s fr1.chrUn 52441955 33 - 349519338 AGCCTCCTAGGAGGCC-TCTGGCACCCTAAAGGA a score=-1228.0 s hg17.chr7_random 68692 15 + 778964 TGCCCT----ATCCATGAG- s panTro1.chr6 161429817 15 + 161576975 TGCCTTG---AGCC-TGAG- s fr1.chrUn 52441988 19 - 349519338 GGCCTCTGGCACCC-TAAAG a score=821.0 s hg17.chr7_random 68707 10 + 778964 GAGACGGCCT-- s panTro1.chr6 161429832 10 + 161576975 GAGACGGCCT-- s rn3.chr2 148444624 10 + 258222147 GAGCAGGTCT-- s fr1.chrUn 52442007 9 - 349519338 ---GAGGCCCCT a score=3960.0 s hg17.chr7_random 68717 70 + 778964 GGGACC-------AGGATGCCCT-ATCCATGAGGAGACGGCCTGGGACCAGGATGCCCTATACATGAGGAGACGGCCT s panTro1.chr6 161429842 70 + 161576975 GGGACC-------AGGATGCCCTGATCC-TGAGGAGACAGCCTGGGACCAGGATGCCCTATCCATGAGGAGACGGCCT s mm5.chr17 22628419 70 + 93559791 GGGGCT-------GGGATGCCCT-TCCCGTAGGGGCTCTTCCAGGGGCTGGGATGCCCTTCCCGTAGGGGCTCTTCCA s rn3.chr2 148444634 70 + 258222147 GGGTCC-------TGGCTGTCTT-CTCTGCCCTGAGCAGGTCTGGGTCCTGGCTGTCTTCTCTGCCCTGGGCAGGCCT s fr1.chrUn 52442016 63 - 349519338 GGCACCCTAAAGGTGGCCGCTGG-CACCCTAAAGG--------AGGCCCCTGGCGCCCTA-----AAGGAGGCCGCT- a score=-156.0 s hg17.chr7_random 68787 35 + 778964 GGGACC----AGGATGCCCTATCCATG-------------AGGAGACGGCCT-- s panTro1.chr6 161429912 35 + 161576975 GGGACC----AGGATGCCCTATCCATG-------------AGGAGACGTCCT-- s rn3.chr2 148444704 39 + 258222147 -------------GTGTCCTGTCTGTGTCTTCTTTGTGCCCGAAGCAGGCCT-- s fr1.chrUn 52442079 38 - 349519338 GGCACCCTAAAGGAGGCCC---CTGGC-------------TAAAGGAGGCCCCT a score=8703.0 s hg17.chr7_random 68822 49 + 778964 GGGACC-------AGG--ATGCCCTTTCCATGAGGAGACGGCCTGGGACC----AGGATGCC s panTro1.chr6 161429947 49 + 161576975 GGGACC-------AGG--ATGCCCTATCCATGAGGGGACGGCCTGGGACC----AGGATGCC s mm5.chr17 22628419 49 + 93559791 GGGGCT-------GGG--ATGCCCTTCCCGTAGGGGCTCTTCCAGGGGCT----GGGATGCC s rn3.chr2 148444743 51 + 258222147 GTGTCC-------TGGCTGTGTCTTCTCTGCCCTGAGCAGGTCTGGGTCC----TGGCTGTC s fr1.chrUn 52442117 60 - 349519338 GGCACCCTAAAGGAGG--CTGCTGGCTCCCTAAAGGAGGCCCCTGGCACCCTAAAGGAGGCC a score=-1752.0 s hg17.chr7_random 68871 16 + 778964 -CTATCCATGAGGAGAC s panTro1.chr6 161429996 16 + 161576975 -CCATCCATGAGGAGAG s mm5.chr17 22628468 16 + 93559791 -CTTCCCGTAGGGGCTC s rn3.chr2 148444794 16 + 258222147 -TTCTCTGCCCTGAGCA s fr1.chrUn 52441635 16 - 349519338 CCTGGCTAAAGGAGGC- a score=0.0 s hg17.chr7_random 68887 9 + 778964 GGCCTGGGA a score=2287.0 s hg17.chr7_random 68887 8 + 778964 GGCCTGGG s panTro1.chr6 161430012 8 + 161576975 GGTCTGGG s mm5.chr17 22628484 8 + 93559791 TTCCAGGG s rn3.chr2 148444810 8 + 258222147 GGTCTGGG a score=-331.0 s hg17.chr7_random 68895 1 + 778964 A s panTro1.chr6 161429950 1 + 161576975 A s mm5.chr17 22628492 1 + 93559791 G s rn3.chr2 148444818 1 + 258222147 T a score=636.0 s hg17.chr7_random 68896 5 + 778964 -CCAGG s panTro1.chr6 161429951 5 + 161576975 -CCAGG s mm5.chr17 22628493 5 + 93559791 -CTGGG s rn3.chr2 148444819 5 + 258222147 -CCTGG s fr1.chrUn 52441651 5 - 349519338 CCCTG- a score=974.0 s hg17.chr7_random 68901 26 + 778964 GTGCCCTATCCATGAGGAGACGGCCT- s panTro1.chr6 161429956 26 + 161576975 ATGCCCTATCCATGAGGGGACGGCCT- s mm5.chr17 22628498 26 + 93559791 ATGCCCTTCCCGTAGGGGCTCTTCCA- s rn3.chr2 148444608 26 + 258222147 GTGTCTTCTCTGCCCTGAGCAGGTCT- s fr1.chrUn 52441656 19 - 349519338 GCACCCTA--------AAGGAGGCCCC a score=2671.0 s hg17.chr7_random 68927 38 + 778964 -GGGACCAGGGTGCCCTTTCCATGAGGAGACGGCCTG--GG- s panTro1.chr6 161429982 38 + 161576975 -GGGACCAGGATGCCCCATCCATGAGGAGAGGGTCTG--GG- s rn3.chr2 148444634 38 + 258222147 -GGGTCCTGGCTGTCTTCTCTGCCCTGAGCAGGTCTG--GG- s fr1.chrUn 52441675 42 - 349519338 TGGCTAAAGGTGGCCCCTGGCACCCTAAAGGAGGCCGCTGGC a score=1659.0 s hg17.chr7_random 68965 34 + 778964 ----ACAAGGGTGCCCTTTCCATGAGGAGACGG---CCTGG s panTro1.chr6 161429775 34 + 161576975 ----ACCAGGATGCCATATCCATGAGGAGACGG---CCTGG s rn3.chr2 148444672 34 + 258222147 ----TCCTGGCTGTCTTCTCTGCCCTGGGCAGG---CCTGT s fr1.chrUn 52441717 41 - 349519338 ACCCTAAAGGAGGCCCCTGGCACCCTAAAGGAGGCCCCTGG a score=-2362.0 s hg17.chr7_random 68999 21 + 778964 ----------GACCAGGATGCCCTATCCATG---- s panTro1.chr6 161429634 21 + 161576975 ----------GCCCAGGACACCCCACGCCTG---- s rn3.chr2 148444706 21 + 258222147 ----------GTCCTGTCTGTGTCTTCTTTG---- s fr1.chrUn 52441758 35 - 349519338 CACCCTAGCCTCCTAGGAGGCCTCTGGCACCCTAA a score=6384.0 s hg17.chr7_random 69020 78 + 778964 AGGAGACGGCCTGGGAC------CAGG--GTGCCCTT----CCCATGAGGAGACGGCCTGGGACC---AGGATGCCCTTTCCATGAGGAGACG s panTro1.chr6 161429655 78 + 161576975 AGGAGATAGCCTGGGAC------CAGG--ATGCCCTA----TCCATGAGGAGATGGCCTGGGACC---AGGATGCCCTATCCATGAGGAGATG s mm5.chr7 100989125 78 - 133051633 AGGAGGAGGGCTGAGGT------CTGG--ACTCATGT----GTCTGAAGGAGGAGGGCTGAGGTC---TGGACTCATGTGTCTGAAGGAGGAG s rn3.chr2 148444731 80 + 258222147 CGAAGCAGGCCTGTGTC------CTGGCTGTGTCTTC----TCTGCCCTGAGCAGGTCTGGGTCC---TGGCTGTCTTCTCTGCCCTGAGCAG s fr1.chrUn 52441793 88 - 349519338 ---AGGAGGCCTCTGGCACCCTAAAGG--AGGCCTCTGGCACCCTAAAGGAGGCCGCTGGCGCCCTAAAGGAGGCCCCTGGCTAAAGGAGGCC a score=600.0 s hg17.chr7_random 69098 1 + 778964 G s panTro1.chr6 161429733 1 + 161576975 G s mm5.chr7 100989203 1 - 133051633 G s rn3.chr2 148444811 1 + 258222147 G a score=-2878.0 s hg17.chr7_random 69099 61 + 778964 CCTGGGACC-------AGGATGC---------------------------------------------------------------CCTATCCATGAGGAGACGGCCTGGGACCAGGGTGCCCTTTCCATG s panTro1.chr6 161429734 61 + 161576975 CCTGGGACC-------AGGGTGC---------------------------------------------------------------CCTATCCATGAGGAGACAGCCTGGGACCAGGATGCCATATCCATG s mm5.chr7 100989204 60 - 133051633 GCTGAGGTC-------TGGACTC---------------------------------------------------------------GTGTGCCTGAGGGAGGAAAGCTGAGGTCTGGACTTC-TGTACCTG s rn3.chr2 148444812 61 + 258222147 TCTGGGTCC-------TGGCTGT---------------------------------------------------------------CTTCTCTGCCCTGAGCAGGCCTGTGTCCTGTCTGTGTCTTCTTTG s fr1.chrUn 52442177 131 - 349519338 CCTGGCACCCTAAAGGAGGCCGCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCACATACCCGAGGGGAGACGGCGTGACATCAGAGTCTCGGTCCAACA a score=5687.0 s hg17.chr7_random 69160 17 + 778964 AGAAGACGGCCTGGGAC s panTro1.chr6 161429795 17 + 161576975 AGGAGACGGCCTGGGAC s mm5.chr7 100989125 17 - 133051633 AGGAGGAGGGCTGAGGT s rn3.chr2 148444877 17 + 258222147 CGAAGCAGGCCTGTGTC s fr1.chrUn 52442308 17 - 349519338 GGAAGTGCTCCTGGGAC a score=890.0 s hg17.chr7_random 69177 3 + 778964 CAG s panTro1.chr6 161429812 3 + 161576975 CAG s mm5.chr7 100989142 3 - 133051633 CTG s rn3.chr2 148444894 3 + 258222147 CTG a score=3098.0 s hg17.chr7_random 69180 42 + 778964 -GGTG-----CCTTGAGCCTGAGGAGACGGCCTGGGACC----AGGATGCCC s panTro1.chr6 161429815 42 + 161576975 -GATG-----CCTTGAGCCTGAGGAGACGGCCTGGGACC----AGGATGCCC s mm5.chr7 100989145 42 - 133051633 -GACT-----CATGTGTCTGAAGGAGGAGGGCTGAGGTC----TGGACTCAT s rn3.chr2 148444897 44 + 258222147 -GCTGTGTCTTCTCTGCCCTGAGCA---GGTCTGGGTCC----TGGCTGTCT s fr1.chrUn 52441967 47 - 349519338 GGCCT-----CTGGCACCCTAAAGGAGGCCTCTGGCACCCTAAAGGAGGCCC a score=259.0 s hg17.chr7_random 69222 141 + 778964 -TATCCATGAGGAGAGGGT--CTGGGACC----AGGATGCCCTT----TCCATGAGGAGACGGCCTGGGACC----AGGATGCCCTTTCCATGAGGAGACGGCCTGGGACC-------AGGATGCCCTATCCATGAGGAGAAGGCCTGGGACC----AGGATGCCCT--------------------------------------------------------------------------------------- s panTro1.chr6 161429682 141 + 161576975 -TATCCATGAGGAGATGGC--CTGGGACC----AGGATGCCCTA----TCCATGAGGAGATGGCCTGGGACC----AGGGTGCCCTATCCATGAGGAGACAGCCTGGGACC-------AGGATGCCATATCCATGAGGAGACGGCCTGGGACC----AGGATGCCTT--------------------------------------------------------------------------------------- s mm5.chr7 100989188 136 - 133051633 -TGTCTG-AAGGAGGAGGG--CTGAGGTC----TGGACTCGTGT----GCCTGAGGGAGGAAAGCTGAGGTC----TGGACTTCTGTACCTGAGGGAGAAGGGCTGGGGCC-------AGGATCCCAGGGTCTGAGGAAAAAGGACCGGGTCC----TGACCA------------------------------------------------------------------------------------------- s rn3.chr2 148444941 141 + 258222147 -TCTCTGCCCTGAGCAGGT--CTGGGTCC----TGGCTGTCTTC----TCTGCCCTGAGCAGGCCTGGGTCC----TGGCTGTCTTCTCTGCCCTGAGCAGGCCTGGGTCC-------TGGCTGTCTTCTCTGCCCTGGGCAGGCCTGGGTCC----TGGCTGTGTC--------------------------------------------------------------------------------------- s fr1.chrUn 52442014 252 - 349519338 CTGGCACCCTAAAGGTGGCCGCTGGCACCCTAAAGGAGGCCCCTGGCGCCCTAAAGGAGGCCG-CTGGCACCCTAAAGGAGGCCCCTGGCTAAAGGAGGCC-CCTGGCACCCTAAAGGAGGCTGCTGGCTCCCTAAAGGAGGCCCCTGGCACCCTAAAGGAGGCCCCTGGCACCCTAAAGGAGGCCGCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCACAT a score=2663.0 s hg17.chr7_random 69363 33 + 778964 ATCCATGA-----G----GAGACGGC----CTGGGACCAGG--GTGCC s panTro1.chr6 161429788 33 + 161576975 ATCCATGA-----G----GAGACGGC----CTGGGACCAGG--ATGCC s mm5.chr7 100989324 40 - 133051633 ATCTAGGACTGAGG----GAGGAGGCTGGGCTGGGGTCAG----TACC s rn3.chr2 148445082 39 + 258222147 TTCTTTGT-----GCCCTGGGCAGGC----CTGTGTCCTGGTTGTGTC s fr1.chrUn 52442266 33 - 349519338 ACCCGAGG-----G----GAGACGGC----GTGACATCAGA--GTCTC a score=-1229.0 s hg17.chr7_random 69396 26 + 778964 CTT---TCCATGAGAAGACGGCCTGGGAC s mm5.chr7 100989364 27 - 133051633 CCTGGGTTTGTAGGAAGA--GGTTGGGTT s rn3.chr2 148445124 23 + 258222147 TCT---GCTCTGAGCAG---GTCTGGGTC s fr1.chrUn 52442299 26 - 349519338 ---GGTCCAACAGGAAGTGCTCCTGGGAC a score=111.0 s hg17.chr7_random 69422 10 + 778964 CAGGGTGCCT s mm5.chr7 100989391 9 - 133051633 CTGGAC-CCC s rn3.chr2 148445147 10 + 258222147 CTGGCTGTCT a score=21944.0 s hg17.chr7_random 69432 163 + 778964 ---TGAGCCTGAGGAGACGGCCTGGGACCAGGATGCCCTATCCATGAGGAGACAGCCTGGGACCAGGATGCCCTATCCATGAGGAGACAGCCTGGGACCAGGATGCCCTATCCATGAGGAGACAGCCTGGGAC----CAGGA--TGCCCTATCCATGAGGAGAAGGCCTGGG s panTro1.chr6 161429857 163 + 161576975 ---TGATCCTGAGGAGACAGCCTGGGACCAGGATGCCCTATCCATGAGGAGACGGCCTGGGACCAGGATGCCCTATCCATGAGGAGACGTCCTGGGACCAGGATGCCCTATCCATGAGGGGACGGCCTGGGAC----CAGGA--TGCCCCATCCATGAGGAGAGGGTCTGGG s mm5.chr7 100989400 166 - 133051633 ---TGAATCTGA-GAGAGAAACTGGGGTCTGGACGTCTGGGCCTGAGGGAGGAGAGCTGGGGTCAGGAC-CCCTGTGTCTGAGGGAAGAAGGTGGGTCCTGGCCCCTTGAGTC-TGAGGGAGGAGGCTGGGGCAGGACGGGATCTATGTCACCCATTAGCTGAGGTCATAAG s rn3.chr2 148445157 163 + 258222147 TCTCTGCCCTGGGCAG---GCCTGGGTCCTGGCTGTCTTCTCTGCCCTGAGCAGGTCTGGGTCCTGGCTGTCTTCTCTGCCCTGGGCAGGCCTGGGTCCTGGCTGTCTTCTCTGCCCTGGGCAGGCCTGGGTC----CTGGC--TGTCTTCTCTGCCCTGAGCAGGCCTGGG a score=983.0 s hg17.chr7_random 69595 16 + 778964 ACCAG--GATGCCCT-ATC s panTro1.chr6 161429810 17 + 161576975 ACCAG--GATGCCTTGAGC s mm5.chr7 100989566 17 - 133051633 -CTTGGTGCTGCCCC-AGC s rn3.chr2 148445320 16 + 258222147 TCCTG--GCTGTCTT-CTC a score=3059.0 s hg17.chr7_random 69611 32 + 778964 C-ATGAGGAGACGGCCTGGGACC---AGGATGCCCT s panTro1.chr6 161429827 31 + 161576975 C--TGAGGAGACGGCCTGGGACC---AGGATGCCCT s mm5.chr7 100989583 33 - 133051633 CTCTGCCCAGGCGGGCGGGGCCC---TGGCTGCTTT s rn3.chr2 148445336 32 + 258222147 T-GCCCTGGGCAGGCCTGGGTCC---TGGCTGTCTT s fr1.chrUn 52441421 35 - 349519338 -CAAAAGGAGGCCGCTGGCGCCCTAAAGGAGGCCCC a score=918.0 s hg17.chr7_random 69643 4 + 778964 ATCC s panTro1.chr6 161429859 4 + 161576975 ATCC s rn3.chr2 148445368 4 + 258222147 CTCT s fr1.chrUn 52441460 4 - 349519338 ACCC a score=4703.0 s hg17.chr7_random 69647 64 + 778964 ATGAGGAGACGGCCTGGGACCAGG-------GTGCCCTATCCATGAGGAGACGGCCTGGGACC----AGGGTGCC s panTro1.chr6 161429757 64 + 161576975 ATGAGGAGACAGCCTGGGACCAGG-------ATGCCATATCCATGAGGAGACGGCCTGGGACC----AGGATGCC s rn3.chr2 148445375 68 + 258222147 CTGGGCAG---GCCTGGGTCCTGTCCTGGTCGTGTCTTCTGTGCCCTGAGCAGGCCTGGGTCC----TGGCTGTC s fr1.chrUn 52441464 53 - 349519338 TAAAGGAGGCCGCTGGCGCCCTAA---------------------AGGAGGC-CCCTGGCACCCTAAAGGAGGCC a score=-1089.0 s hg17.chr7_random 69711 7 + 778964 CTTTCCA--- s panTro1.chr6 161429786 7 + 161576975 ATATCCA--- s rn3.chr2 148445443 7 + 258222147 TTCTCTG--- s fr1.chrUn 52441517 7 - 349519338 ---CCTGGCA a score=5302.0 s hg17.chr7_random 69718 28 + 778964 ----TGAGGAGACGGCCTGGGACC---AGGGTGCC s panTro1.chr6 161429793 28 + 161576975 ----TGAGGAGACGGCCTGGGACC---AGGATGCC s mm5.chr17 22628440 28 + 93559791 ----TAGGGGCTCTTCCAGGGGCT---GGGATGCC s rn3.chr2 148445453 25 + 258222147 ----TGGGCA---GGCCTGGGTCC---TGGCTGTC s fr1.chrUn 52441524 35 - 349519338 CCCTAAAGGAGGCCGCTGGCGCCCTAAAGGAGGCC a score=-459.0 s hg17.chr7_random 69746 7 + 778964 CTTTCCA--- s mm5.chr17 22628468 7 + 93559791 CTTCCCG--- s rn3.chr2 148445478 7 + 258222147 TTCTCTG--- s fr1.chrUn 52441559 7 - 349519338 ---CCTGGCT a score=3343.0 s hg17.chr7_random 69753 49 + 778964 TGAGGAGACGGCCTGGGACC----AGGGTGCCCTATCCATGAGGAGACGGCCT s panTro1.chr6 161429653 49 + 161576975 TGAGGAGATAGCCTGGGACC----AGGATGCCCTATCCATGAGGAGATGGCCT s mm5.chr17 22628475 49 + 93559791 TAGGGGCTCTTCCAGGGGCT----GGGATGCCCTTCCCGTAGGGGCTCTTCCA s rn3.chr2 148445488 46 + 258222147 TGGGCAG---GCCTGGGTCC----TGGCTGTCTTCTCTGCCCTGAGCAGGCCT s fr1.chrUn 52441566 51 - 349519338 AAAGGAGGC-CCCTGGCACCCTAAAGGAGACCCCTGGCTAAAGGAGGCCCCT- a score=5646.0 s hg17.chr7_random 69802 21 + 778964 GGGACC----AGGGTGCCCTTTCCA s panTro1.chr6 161429702 21 + 161576975 GGGACC----AGGATGCCCTATCCA s mm5.chr17 22628419 21 + 93559791 GGGGCT----GGGATGCCCTTCCCG s rn3.chr2 148445534 21 + 258222147 GGGTCC----TGGCTGTCTTCTCTG s fr1.chrUn 52441617 25 - 349519338 GGCACCCTAAAGGAGGCCCCTGGCT a score=4577.0 s hg17.chr7_random 69823 35 + 778964 TGAGGAGACGGCCTGGGACC----AGG--GTGCCCTTTCCA s panTro1.chr6 161429653 35 + 161576975 TGAGGAGATAGCCTGGGACC----AGG--ATGCCCTATCCA s mm5.chr17 22628440 35 + 93559791 TAGGGGCTCTTCCAGGGGCT----GGG--ATGCCCTTCCCG s rn3.chr2 148445558 34 + 258222147 TGAGCAG---GCCTGGGTCC----TGGTTGTGTCTTCTCTG s fr1.chrUn 52441642 38 - 349519338 AAAGGAGGC-CCCTGGCACCCTAAAGG--AGGCCCCTGGCT a score=6943.0 s hg17.chr7_random 69858 68 + 778964 TGAGGAGACGGCCTGGGACCAGGATGCCCTATCCATGAGGAGACGGCCTGGGACC----AGGATGCCCTATC---- s panTro1.chr6 161429653 68 + 161576975 TGAGGAGATAGCCTGGGACCAGGATGCCCTATCCATGAGGAGATGGCCTGGGACC----AGGATGCCCTATC---- s mm5.chr17 22628475 68 + 93559791 TAGGGGCTCTTCCAGGGGCTGGGATGCCCTTCCCGTAGGGGCTCTTCCAGGGGCT----GGGATGCCCTTCC---- s rn3.chr2 148445595 65 + 258222147 TGGGCAG---GCCTGGGTCCTGGCTGTCTTCTCTGCCCTGGGCAGGCCTGGGTCC----TGGCTGTCTTCTC---- s fr1.chrUn 52441680 61 - 349519338 -AAAGGTGGCCCCTGGCACC------------CTAAAGGAGGCCG--CTGGCACCCTAAAGGAGGCCCCTGGCACC a score=806.0 s hg17.chr7_random 69926 7 + 778964 CATGAGG s panTro1.chr6 161429721 7 + 161576975 CATGAGG s mm5.chr17 22628543 7 + 93559791 CGTAGGG s rn3.chr2 148445660 7 + 258222147 TGCCCTG s fr1.chrUn 52441421 7 - 349519338 CAAAAGG a score=984.0 s hg17.chr7_random 69933 11 + 778964 AGACGGC--CTGG- s panTro1.chr6 161429728 11 + 161576975 AGATGGC--CTGG- s rn3.chr2 148445667 11 + 258222147 GGCAGGC--CTGG- s fr1.chrUn 52441428 11 - 349519338 ---AGGCCGCTGGC a score=1470.0 s hg17.chr7_random 69944 32 + 778964 GACC---AGGATGCCC----TATCCATGAGGAGACGGCC s panTro1.chr6 161429634 32 + 161576975 GCCC---AGGACACCC----CACGCCTGAGGAGATAGCC s rn3.chr2 148445678 32 + 258222147 GTCC---TGGCTGTCT----TCTCTGCCCTGAGCAGGCC s fr1.chrUn 52441439 39 - 349519338 GCCCTAAAGGAGGCCCCTGGCACCCTAAAGGAGGCCGCT a score=0.0 s hg17.chr7_random 69976 9 + 778964 TGGGACCAG a score=273.0 s hg17.chr7_random 69976 1 + 778964 T s panTro1.chr6 161429666 1 + 161576975 T s rn3.chr2 148445710 1 + 258222147 T a score=2545.0 s hg17.chr7_random 69977 8 + 778964 GGGACCAG s panTro1.chr6 161429667 8 + 161576975 GGGACCAG s mm5.chr17 22628419 8 + 93559791 GGGGCTGG s rn3.chr2 148445711 8 + 258222147 GGGTCCTG a score=16320.0 s hg17.chr7_random 69985 106 + 778964 GGTGCCCTATCCATGAGGAGACGGCCTGGGACC----AGGGTGCCCTT----TCCATGAGGAGACGGCCTGGGACC---AGGATGCCCTATCCATGAGGAGACGGCCTGGGACC----AGG s panTro1.chr6 161429675 106 + 161576975 GATGCCCTATCCATGAGGAGATGGCCTGGGACC----AGGATGCCCTA----TCCATGAGGAGATGGCCTGGGACC---AGGGTGCCCTATCCATGAGGAGACAGCCTGGGACC----AGG s mm5.chr17 22628427 106 + 93559791 GATGCCCTTCCCGTAGGGGCTCTTCCAGGGGCT----GGGATGCCCTT----CCCGTAGGGGCTCTTCCAGGGGCT---GGGATGCCCTTCCCGTAGGGGCTCTTCCAGGGGCT----GGG s rn3.chr2 148445719 106 + 258222147 GCTGTCTTCTCTGCCCTGGGCAGGCCTGGGTCC----TGGCTGTCTTC----TCTGCCCTGGGCAGGCCTGGGTCC---TGGCTGTCTTCTCTGCCCTGGGCAGGCCTGGGTCC----AGG s fr1.chrUn 52441478 114 - 349519338 GGCGCCCTA------AAGGAGGCCCCTGGCACCCTAAAGGAGGCCCCTGGCACCCTAAAGGAGGCCGCTGGCGCCCTAAAGGAGGCCCCTGGCTAAAGGAGGCC-CCTGGCACCCTAAAGG a score=3147.0 s hg17.chr7_random 70091 17 + 778964 ATGCCCTTTCCATGAGG s panTro1.chr6 161429781 17 + 161576975 ATGCCATATCCATGAGG s mm5.chr17 22628533 17 + 93559791 ATGCCCTTCCCGTAGGG s fr1.chrUn 52441592 17 - 349519338 AGACCCCTGGCTAAAGG a score=2021.0 s hg17.chr7_random 70108 18 + 778964 AGACGGCCTGGGACC----AGG s panTro1.chr6 161429798 18 + 161576975 AGACGGCCTGGGACC----AGG s fr1.chrUn 52441609 21 - 349519338 AGGC-CCCTGGCACCCTAAAGG a score=1585.0 s hg17.chr7_random 70126 6 + 778964 GTGCCT s panTro1.chr6 161429816 6 + 161576975 ATGCCT s rn3.chr2 148445403 6 + 258222147 GTGTCT s fr1.chrUn 52441630 6 - 349519338 AGGCCC a score=3629.0 s hg17.chr7_random 70132 37 + 778964 TG--AGCCTGAGGAGACGGCCTGGGACC----AGGATGCCCTA s panTro1.chr6 161429857 37 + 161576975 TG--ATCCTGAGGAGACAGCCTGGGACC----AGGATGCCCTA s rn3.chr2 148445411 35 + 258222147 TGT-GCCCTGAGCAG---GCCTGGGTCC----TGGCTGTCTTC s fr1.chrUn 52441636 40 - 349519338 --CTGGCTAAAGGAGGC-CCCTGGCACCCTAAAGGAGGCCCCT a score=5013.0 s hg17.chr7_random 70169 88 + 778964 TCCATGAGGAGACAGCCTGGGACCAGGATGCCCTATCCATGAGGAGACGGCCTGGGACCAGGATG----CCCTATCCATGAGGAGACGGCCT-- s panTro1.chr6 161429860 87 + 161576975 TCC-TGAGGAGACAGCCTGGGACCAGGATGCCCTATCCATGAGGAGACGGCCTGGGACCAGGATG----CCCTATCCATGAGGAGACGTCCT-- s rn3.chr2 148445450 84 + 258222147 CCC-TGGGCAG---GCCTGGGTCCTGGCTGTCTTCTCTGCCCTGGGCAGGCCTGGGTCCTGGCTG----TCTTCTCTGCCCTGAGCAGGCCT-- s fr1.chrUn 52441676 80 - 349519338 ------GGCTAAAGGT---GGCCCCTGGCACCCTA-----AAGGAGGCCGCTGGCACCCTAAAGGAGGCCCCTGGCACCCTAAAGGAGGCCCCT a score=3847.0 s hg17.chr7_random 70257 70 + 778964 GGGACC----------AGGATGCCCT---ATCCATGAGGAGACGGCCTGGGACC----AGG--ATGCCCTATCCATGAG-GAGACGGCCT--- s panTro1.chr6 161429947 70 + 161576975 GGGACC----------AGGATGCCCT---ATCCATGAGGGGACGGCCTGGGACC----AGG--ATGCCCCATCCATGAG-GAGAGGGTCT--- s mm5.chr17 22628419 66 + 93559791 GGGGCT----------GGGATGCCCT---TCCCGTAGGGGCTCTTCCAGGGGCT----GGG--ATGCCCTTCCCGT-----AGGGGCTCT--- s rn3.chr2 148445534 72 + 258222147 GGGTCC----------TGGCTGTCTT---CTCTGCCCTGAGCAGGCCTGGGTCC----TGGTTGTGTCTTCTCTGCCCT-GGGCAGGCCT--- s fr1.chrUn 52441756 91 - 349519338 GGCACCCTAGCCTCCTAGGAGGCCTCTGGCACCCTAAAGGAGGCCTCTGGCACCCTAAAGG--AGGCCTCTGGCACCCTAAAGGAGGCCGCTG a score=2100.0 s hg17.chr7_random 70327 3 + 778964 GGG s panTro1.chr6 161430017 3 + 161576975 GGG s mm5.chr17 22628419 3 + 93559791 GGG s rn3.chr2 148445606 3 + 258222147 GGG s fr1.chrUn 52441847 3 - 349519338 GCG a score=5513.0 s hg17.chr7_random 70330 48 + 778964 ACC----AGGATGCCCT-ATCCATGAGGAGACGGCCTGGGACC----AGGGTGCCCT s panTro1.chr6 161429810 48 + 161576975 ACC----AGGATGCCTTGAGCC-TGAGGAGACGGCCTGGGACC----AGGATGCCCT s mm5.chr17 22628422 48 + 93559791 GCT----GGGATGCCCT-TCCCGTAGGGGCTCTTCCAGGGGCT----GGGATGCCCT s rn3.chr2 148445609 48 + 258222147 TCC----TGGCTGTCTT-CTCTGCCCTGGGCAGGCCTGGGTCC----TGGCTGTCTT s fr1.chrUn 52441850 54 - 349519338 -CCCTAAAGGAGGCCCC-TGGC-TAAAGGAGGCCCCTGGCACCCTAAAGGAGGCCCC a score=-761.0 s hg17.chr7_random 70378 5 + 778964 -----TCCCA s mm5.chr17 22628470 5 + 93559791 -----TCCCG s rn3.chr2 148445657 5 + 258222147 -----CTCTG s fr1.chrUn 52441904 9 - 349519338 TGGCACCCT- a score=8101.0 s hg17.chr7_random 70383 71 + 778964 TGAGGAGACGGCCTG------------GGACCAGGGTGCCCTATCCATGAGGAGACGGCCTGGGACC----AGGGTGCCCTTCCCAT---- s panTro1.chr6 161429653 71 + 161576975 TGAGGAGATAGCCTG------------GGACCAGGATGCCCTATCCATGAGGAGATGGCCTGGGACC----AGGATGCCCTATCCAT---- s mm5.chr17 22628475 71 + 93559791 TAGGGGCTCTTCCAG------------GGGCTGGGATGCCCTTCCCGTAGGGGCTCTTCCAGGGGCT----GGGATGCCCTTCCCGT---- s rn3.chr2 148445665 68 + 258222147 TGGGCAG---GCCTG------------GGTCCTGGCTGTCTTCTCTGCCCTGAGCAGGCCTGGGTCC----TGGCTGTCTTCTCTGC---- s fr1.chrUn 52441913 91 - 349519338 AAAGGAGGCCGCTGGCACCCTAAAGGAGGCCCCTGGCACCCTAGCCTCCTAGGAGGCCTCTGGCACCCTAAAGGAGGCCTCTGGCACCCTA a score=-127.0 s hg17.chr7_random 70454 4 + 778964 GAGG s panTro1.chr6 161429654 4 + 161576975 GAGG s mm5.chr17 22628546 3 + 93559791 -AGG s rn3.chr2 148445736 1 + 258222147 G--- s fr1.chrUn 52442004 4 - 349519338 AAGG a score=1399.0 s hg17.chr7_random 70458 30 + 778964 -AGACGGCCTGGGACC----AGGGTGCCCTATCCA---- s panTro1.chr6 161429658 30 + 161576975 -AGATAGCCTGGGACC----AGGATGCCCTATCCA---- s rn3.chr2 148445737 30 + 258222147 -GGCAGGCCTGGGTCC----TGGCTGTCTTCTCTG---- s fr1.chrUn 52442008 37 - 349519338 AGGCC--CCTGGCACCCTAAAGGTGGCCGCTGGCACCCT a score=-486.0 s hg17.chr7_random 70488 5 + 778964 TGAGG s panTro1.chr6 161429653 5 + 161576975 TGAGG s rn3.chr2 148445770 2 + 258222147 TG--- s fr1.chrUn 52442045 5 - 349519338 AAAGG a score=8424.0 s hg17.chr7_random 70493 53 + 778964 AGACGGCCTGGGACCAGGATGCCCTATCCATGAGGAGACGGCCTGGGACC---AGG s panTro1.chr6 161429658 53 + 161576975 AGATAGCCTGGGACCAGGATGCCCTATCCATGAGGAGATGGCCTGGGACC---AGG s mm5.chr17 22628480 53 + 93559791 GCTCTTCCAGGGGCTGGGATGCCCTTCCCGTAGGGGCTCTTCCAGGGGCT---GGG s rn3.chr2 148445772 53 + 258222147 GGCAGGCCTGGGTCCTGGCTGTCTTCTCTGCCCTGGGCAGGCCTGGGTCC---AGG s fr1.chrUn 52442050 42 - 349519338 ---------AGGCCCCTGGCGCCCTA-----AAGGAGGCCGCTGGCACCCTAAAGG a score=2979.0 s hg17.chr7_random 70546 17 + 778964 ATGCCCTATCCATGAGG s panTro1.chr6 161429711 17 + 161576975 ATGCCCTATCCATGAGG s mm5.chr17 22628533 17 + 93559791 ATGCCCTTCCCGTAGGG s rn3.chr2 148445650 17 + 258222147 CTGTCTTCTCTGCCCTG s fr1.chrUn 52442092 17 - 349519338 AGGCCCCTGGCTAAAGG a score=708.0 s hg17.chr7_random 70563 9 + 778964 AGACGGCCT-- s panTro1.chr6 161429728 9 + 161576975 AGATGGCCT-- s rn3.chr2 148445667 9 + 258222147 GGCAGGCCT-- s fr1.chrUn 52442109 8 - 349519338 ---AGGCCCCT a score=10615.0 s hg17.chr7_random 70572 68 + 778964 GGGACC-------AGGATGCCCTATCCATGAGGAGACGGCCTGGGACC----AGGATGCCC----TATCCATGAGGAGACGGC s panTro1.chr6 161429737 68 + 161576975 GGGACC-------AGGGTGCCCTATCCATGAGGAGACAGCCTGGGACC----AGGATGCCA----TATCCATGAGGAGACGGC s mm5.chr17 22628419 68 + 93559791 GGGGCT-------GGGATGCCCTTCCCGTAGGGGCTCTTCCAGGGGCT----GGGATGCCC----TTCCCGTAGGGGCTCTTC s rn3.chr2 148445676 68 + 258222147 GGGTCC-------TGGCTGTCTTCTCTGCCCTGAGCAGGCCTGGGTCC----TGGCTGTCT----TCTCTGCCCTGGGCAGGC s fr1.chrUn 52442117 83 - 349519338 GGCACCCTAAAGGAGGCTGCTGGCTCCCTAAAGGAGGCCCCTGGCACCCTAAAGGAGGCCCCTGGCACCCTAAAGGAGGCCGC a score=504.0 s hg17.chr7_random 70640 2 + 778964 CT s panTro1.chr6 161429805 2 + 161576975 CT s mm5.chr17 22628487 2 + 93559791 CA s rn3.chr2 148445744 2 + 258222147 CT a score=4429.0 s hg17.chr7_random 70642 13 + 778964 GGGACCAGGATGC s panTro1.chr6 161429807 13 + 161576975 GGGACCAGGATGC s mm5.chr17 22628419 13 + 93559791 GGGGCTGGGATGC s rn3.chr2 148445746 13 + 258222147 GGGTCCTGGCTGT a score=1503.0 s hg17.chr7_random 70655 3 + 778964 CCT s panTro1.chr6 161429820 3 + 161576975 CTT s mm5.chr17 22628432 3 + 93559791 CCT s rn3.chr2 148445759 3 + 258222147 CTT s fr1.chrUn 52442263 3 - 349519338 CAT a score=6948.0 s hg17.chr7_random 70658 31 + 778964 ATCCATGAGGAGACGGCCTGGGACCAGGGTG s panTro1.chr6 161429788 31 + 161576975 ATCCATGAGGAGACGGCCTGGGACCAGGATG s mm5.chr17 22628435 31 + 93559791 TCCCGTAGGGGCTCTTCCAGGGGCTGGGATG s rn3.chr2 148445762 31 + 258222147 CTCTGCCCTGGGCAGGCCTGGGTCCTGGCTG s fr1.chrUn 52442266 31 - 349519338 ACCCGAGGGGAGACGGCGTGACATCAGAGTC a score=-98.0 s hg17.chr7_random 70689 9 + 778964 CCCTTCCCA- s mm5.chr17 22628466 9 + 93559791 CCCTTCCCG- s rn3.chr2 148445793 8 + 258222147 -TCTTCTCT- s fr1.chrUn 52442297 9 - 349519338 -TCGGTCCAA a score=4396.0 s hg17.chr7_random 70698 19 + 778964 TGAGGAGACGGCCTGGGAC s panTro1.chr6 161429653 19 + 161576975 TGAGGAGATAGCCTGGGAC s mm5.chr17 22628475 19 + 93559791 TAGGGGCTCTTCCAGGGGC s rn3.chr2 148445805 16 + 258222147 TGGGCAG---GCCTGGGTC s fr1.chrUn 52442306 19 - 349519338 CAGGAAGTGCTCCTGGGAC a score=1587.0 s hg17.chr7_random 70717 4 + 778964 CAGG s panTro1.chr6 161429672 4 + 161576975 CAGG s mm5.chr17 22628494 4 + 93559791 TGGG s rn3.chr2 148445821 4 + 258222147 CAGG a score=902.0 s hg17.chr7_random 70721 4 + 778964 GTGC s panTro1.chr6 161429676 4 + 161576975 ATGC s mm5.chr17 22628498 4 + 93559791 ATGC a score=8709.0 s hg17.chr7_random 70725 43 + 778964 CCTATCCAT----GAGGAGACGGCCTGGGACCAGGGTGCCCTTCCCA s panTro1.chr6 161429680 43 + 161576975 CCTATCCAT----GAGGAGATGGCCTGGGACCAGGATGCCCTATCCA s mm5.chr17 22628502 43 + 93559791 CCTTCCCGT----AGGGGCTCTTCCAGGGGCTGGGATGCCCTTCCCG s rn3.chr2 109776509 43 - 258222147 CCTGCCCAGGGCAGAGAAGACAGCCAGGACCCAGG----CCTGCCCA a score=-522.0 s hg17.chr7_random 70768 5 + 778964 TGAGG-------- s panTro1.chr6 161429653 5 + 161576975 TGAGG-------- s mm5.chr17 22628545 5 + 93559791 TAGGG-------- s rn3.chr2 109776552 11 - 258222147 --GGGCAGAGAAG a score=3682.0 s hg17.chr7_random 70773 30 + 778964 AGACGGCCTGGGACCAGGGTGCCCTATCCA s panTro1.chr6 161429658 30 + 161576975 AGATAGCCTGGGACCAGGATGCCCTATCCA s rn3.chr2 109776563 26 - 258222147 ACACAACCAGGACCCAGG----CCTGCTCA a score=516.0 s hg17.chr7_random 70803 5 + 778964 ----TGAGG s panTro1.chr6 161429653 5 + 161576975 ----TGAGG s rn3.chr2 109776589 9 - 258222147 GGGCAGAGA a score=10869.0 s hg17.chr7_random 70808 70 + 778964 AGACGGCCTGGGACCAGGATGCCCTATCCAT----GAGGAGACGGCCTGGGACCAGGATGCCCTATCCATGAGG---- s panTro1.chr6 161429658 70 + 161576975 AGATAGCCTGGGACCAGGATGCCCTATCCAT----GAGGAGATGGCCTGGGACCAGGATGCCCTATCCATGAGG---- s mm5.chr17 22628480 70 + 93559791 GCTCTTCCAGGGGCTGGGATGCCCTTCCCGT----AGGGGCTCTTCCAGGGGCTGGGATGCCCTTCCCGTAGGG---- s rn3.chr2 109776598 70 - 258222147 AGACAGCCAGGACCCAGG----CCTGCTCAGGGCAGAGAAGACAGCCAGGACCCAGG----CCTGCCCAGGGCAGAGA a score=10346.0 s hg17.chr7_random 70878 95 + 778964 AGACGGCCTGGGACCAGGATGCCCTATCCAT----GAGGAGACGGCCTGGGACCAGGATGCCCTATCCAT------GAGGAGACGGCCTGGGACCAGGAT----GCCCT s panTro1.chr6 161429728 95 + 161576975 AGATGGCCTGGGACCAGGGTGCCCTATCCAT----GAGGAGACAGCCTGGGACCAGGATGCCATATCCAT------GAGGAGACGGCCTGGGACCAGGAT----GCCTT s rn3.chr2 109776668 98 - 258222147 AGACAGCCAGGACCCAGG----CCTGCCCAGGGCAGAGAAGACAGCCAGGACCCAGG----CCTGCTCAGGGCACAGAAGACACGACCAGGA--CAGGACCCAGGCCT- a score=11243.0 s hg17.chr7_random 70973 89 + 778964 ATCCAT----GAGGAGACGGCCTGGGACCAGGATGCCCTATCCAT----GAGGAGACGGCCTGGGACCAGGATGCCCTATCCAT----GAGGAGACGGCCT s panTro1.chr6 161429683 89 + 161576975 ATCCAT----GAGGAGATGGCCTGGGACCAGGATGCCCTATCCAT----GAGGAGATGGCCTGGGACCAGGGTGCCCTATCCAT----GAGGAGACAGCCT s rn3.chr2 109776766 93 - 258222147 GCCCAGGGCAGAGAAGACAGCCAGGACCCAGG----CCTGCCCAGGGCAGAGAAGACAGCCAGGACCCAGG----CCTGCTCAGGGCAGAGAAGACAGCCA a score=9994.0 s hg17.chr7_random 71062 51 + 778964 GGGACCAGGATGCCCTATCCAT----GAGGAGACGGCCTGGGACCAGGATGCCCT s panTro1.chr6 161429772 51 + 161576975 GGGACCAGGATGCCATATCCAT----GAGGAGACGGCCTGGGACCAGGATGCCTT s mm5.chr17 22628419 51 + 93559791 GGGGCTGGGATGCCCTTCCCGT----AGGGGCTCTTCCAGGGGCTGGGATGCCCT s rn3.chr2 109776859 47 - 258222147 GGACCCAGG----CCTGCCCAGGGCAGAGAAGACAGCCAGGACCCAGG----CCT a score=1825.0 s hg17.chr7_random 71113 19 + 778964 ATCCAT----GAGGAGACGGCCT s panTro1.chr6 161429788 19 + 161576975 ATCCAT----GAGGAGACGGCCT s mm5.chr17 22628470 19 + 93559791 TCCCGT----AGGGGCTCTTCCA s rn3.chr2 109776906 23 - 258222147 GCCCAGGGCAGAGAAGACAGCCA a score=874.0 s hg17.chr7_random 71132 16 + 778964 GGGACCAGGGTGCCCT s panTro1.chr6 161429807 16 + 161576975 GGGACCAGGATGCCTT s rn3.chr2 109776929 12 - 258222147 -GGACCCAGA--CCT- a score=2332.0 s hg17.chr7_random 71148 19 + 778964 ATCCAT----GAGGAGACGGCCT s panTro1.chr6 161429788 19 + 161576975 ATCCAT----GAGGAGACGGCCT s rn3.chr2 109776941 23 - 258222147 GCTCAGGGCAGAGAAGACAGCCA a score=3270.0 s hg17.chr7_random 71167 9 + 778964 GGGACCAGG s panTro1.chr6 161429807 9 + 161576975 GGGACCAGG s mm5.chr17 22628419 9 + 93559791 GGGGCTGGG s rn3.chr2 109776964 9 - 258222147 GGACCCAGG a score=0.0 s hg17.chr7_random 71176 4 + 778964 GTGC a score=602.0 s hg17.chr7_random 71176 3 + 778964 GTG s panTro1.chr6 161429816 3 + 161576975 ATG s mm5.chr17 22628428 3 + 93559791 ATG a score=300.0 s hg17.chr7_random 71179 1 + 778964 C s panTro1.chr6 161429784 1 + 161576975 C s mm5.chr17 22628431 1 + 93559791 C a score=6802.0 s hg17.chr7_random 71180 38 + 778964 CCTTCCCAT----GAGGAGACGGCCTGGGACCAGGATGCCCT s panTro1.chr6 161429785 38 + 161576975 CATATCCAT----GAGGAGACGGCCTGGGACCAGGATGCCTT s mm5.chr17 22628432 38 + 93559791 CCTTCCCGT----AGGGGCTCTTCCAGGGGCTGGGATGCCCT s rn3.chr2 109776973 38 - 258222147 CCTGCCCAGGGCAGAGAAGACAGCCAGGACCCAGA----CCT a score=3328.0 s hg17.chr7_random 71218 33 + 778964 ------ATCCATGAGGAGACGGCCTGGGACCAGGGTGCC s panTro1.chr6 161429788 33 + 161576975 ------ATCCATGAGGAGACGGCCTGGGACCAGGATGCC s mm5.chr17 22628470 33 + 93559791 ------TCCCGTAGGGGCTCTTCCAGGGGCTGGGATGCC s rn3.chr2 109777011 35 - 258222147 GCTCAGAGCAGAGAAGACACAACCAGGACACAGGC---- a score=4220.0 s hg17.chr7_random 71251 35 + 778964 CTTTCCAT--------GAGGAGACGGCCTGGGACCAGGGTGCC s panTro1.chr6 161429786 35 + 161576975 ATATCCAT--------GAGGAGACGGCCTGGGACCAGGATGCC s mm5.chr17 22628503 35 + 93559791 CTTCCCGT--------AGGGGCTCTTCCAGGGGCTGGGATGCC s rn3.chr2 109777046 39 - 258222147 CTGCCCAGGGCACAAAGAAGACACAGCCAGGACCCAGGC---- a score=-148.0 s hg17.chr7_random 71286 11 + 778964 CTTTCCATGAG---- s mm5.chr17 22628538 11 + 93559791 CTTCCCGTAGG---- s rn3.chr2 109777085 15 - 258222147 CTGCCCAGGGCAGAG a score=1040.0 s hg17.chr7_random 71297 20 + 778964 AAGACGGCCTGGGACCAGGG s rn3.chr2 109777100 20 - 258222147 AAGACAGCCAGGACCCAGGC a score=20472.0 s hg17.chr7_random 71317 203 + 778964 -TGCCTTGAGCCTGAGGAGATGGCCTGGGACCAGG-ATGCCCT-ATCCATGAGGAGACAGCCTGGGACCAGGGTGCCCTATCCAT----GAGGAGACGGCCTGGGACCAGGATGCCCTGTCCAT------GAGGAGACGGCCTGGGACCAGG-ATGCCCTATCCAT---GAGGAGACGGCCTGGGACCAGGATGCCCTATCCATGAGGAGACGGCCTGGG s panTro1.chr6 161429817 203 + 161576975 -TGCCTTGAGCCTGAGGAGACGGCCTGGGACCAGG-ATGCCCTGATCC-TGAGGAGACAGCCTGGGACCAGGATGCCCTATCCAT----GAGGAGACGGCCTGGGACCAGGATGCCCTATCCAT------GAGGAGACGTCCTGGGACCAGG-ATGCCCTATCCAT---GAGGGGACGGCCTGGGACCAGGATGCCCCATCCATGAGGAGAGGGTCTGGG s rn3.chr2 109777120 209 - 258222147 CTGCTCAGGGCA-GAGAAGACAGCCAGGACCCAGGCCTGCTCA-GGGC-AGAGAAGACAGCCAGGACCCAGA----CCTGCTCAGGGCAGAGAAGACAGCCAGGACCCAGA----CCTGCTCAGGGCAGAGAAGACACAGCCAGGACACAGGCCTGCTTCGGGCACAAAGAAGACACAGACAGGACACAGGCCTGCTCAGGGCAGAGAAGACAGCCAGGA a score=7784.0 s hg17.chr7_random 71520 83 + 778964 ACCAGGGTGCCCTATCCAT----GAGGAGACGGCCTGGGACCAGGATGCCCTATCCAT------GAGGAGACGGCCTGGGACCAGGATGCCCT- s panTro1.chr6 161429740 83 + 161576975 ACCAGGGTGCCCTATCCAT----GAGGAGACAGCCTGGGACCAGGATGCCATATCCAT------GAGGAGACGGCCTGGGACCAGGATGCCTT- s rn3.chr2 109777329 86 - 258222147 CCCAGA----CCTGCTCAGGGCAGAGAAGACAGCCAGGACCCAGA----CCTGCTCAGGGCAGAGAAGACACAGCCAGGACACAGGCCTGCTTC a score=2488.0 s hg17.chr7_random 71603 35 + 778964 ---ATCCATGAGGAGACGGCCTGGGACCAGGATGCCCT s panTro1.chr6 161429788 35 + 161576975 ---ATCCATGAGGAGACGGCCTGGGACCAGGATGCCTT s rn3.chr2 109777415 34 - 258222147 GGGCACAAAGAAGACACAGACAGGACACAG---GCCT- a score=2166.0 s hg17.chr7_random 71638 19 + 778964 ATCCAT----GAGGAGACGGACT s panTro1.chr6 161429788 19 + 161576975 ATCCAT----GAGGAGACGGCCT s rn3.chr2 109777449 23 - 258222147 GCCCAGGGCAGAGAAGACAGCCA a score=3036.0 s hg17.chr7_random 71657 14 + 778964 GGGACCAGGATGCC s panTro1.chr6 161429807 14 + 161576975 GGGACCAGGATGCC s mm5.chr17 22628419 14 + 93559791 GGGGCTGGGATGCC s rn3.chr2 109777472 10 - 258222147 -GGACCCAGAC--- a score=436.0 s hg17.chr7_random 71671 3 + 778964 CTT s mm5.chr17 22628433 3 + 93559791 CTT s rn3.chr2 109777482 3 - 258222147 CTG a score=4433.0 s hg17.chr7_random 71674 26 + 778964 TCCAT----GAGGAGACGGCCTGGGACCAG s panTro1.chr6 161429894 26 + 161576975 TCCAT----GAGGAGACGGCCTGGGACCAG s mm5.chr17 22628436 26 + 93559791 CCCGT----AGGGGCTCTTCCAGGGGCTGG s rn3.chr2 109777485 30 - 258222147 CTCAGGGCAGAGAAGACAGCCAGGACCCAG a score=14398.0 s hg17.chr7_random 71700 88 + 778964 GATGCCCTATCCATGAGGAGACGGCCTGGGACCAGGATGCCCTATCCATGAGGAGACGGCCTGGGACCAGGATGTCCTATCCATGAGG s panTro1.chr6 161429920 88 + 161576975 GATGCCCTATCCATGAGGAGACGTCCTGGGACCAGGATGCCCTATCCATGAGGGGACGGCCTGGGACCAGGATGCCCCATCCATGAGG s mm5.chr17 22628462 88 + 93559791 GATGCCCTTCCCGTAGGGGCTCTTCCAGGGGCTGGGATGCCCTTCCCGTAGGGGCTCTTCCAGGGGCTGGGATGCCCTTCCCGTAGGG a score=10041.0 s hg17.chr7_random 71788 114 + 778964 AGAGGGTCTGGGCCCACGCCTGCTGAGTTTGTGGAGGTGGGGGGCAATGGACAGGGAGGTGGAGTCTAAGGAGGCACGTAAGGAACATGATATCCCCCCGGGGCCTGATTACAT s panTro1.chr6 161430008 114 + 161576975 AGAGGGTCTGGGCCCACGCCTGCTGAGTTTGTGGAGGTCGGGGGAAATGGACAGGGAGGTGGAGTCTAAGGAGGCACGTAAAGAACGTGATATCCCCCTGGGGCCTGACTACAT a score=199655.0 s hg17.chr7_random 71902 1374 + 778964 CCTACAACATTTTCATACTCAAATCA--GTGTCCATTTTACTAGCGTTAACTACTTTTATTTAGAGATTTGACCTCTGAGATGAATGATGATCATTTAGTCCTGCAAAGAAACACGTGGAGATATGTCAGAAGAAGA----AGCAACACATAGGCTGAAAATGGCGGCAGCCGCA-----------TAGAGAAAAGAATCCCAGTCCCTCCTCACTTTGGCCGGAGGCTCCCAGCTCCTCTCCCTCCATCGTTTCTCCTGCTAACACATCCCCAGGAGCAATTCTGGGGAGACTGCATGGAGCTGTGATTATTCGAGGGTTTATTTCAT-GGCCGTAAATGCTTGTTTTGCAGTGACAGCAAAACTGAAAAAAGTAATCTGTAATCAGAACTTCCATGAGGTCAGGGTTTGGATTCAGCTTTTAATGAGTGCTTAGAGGTAACAAATCAGAGTAGATATTAAGAAGCACGTTTG--ACAAGATTTTAGAAAGAATAGTCATAGAATTCCAGCATCGT-GAGCTGGGAAAGACTGTCAAGTGTTTAGAGCTGGAAGATACTCT-GTGTGACATAGTAAGCCCGGC---------ATCT----CAC----aggtcaagagactttt-tcaagttacacaggtagaatcagagccgaaactccatccaggtctccagcacccaggcctgtgttttctccattgaactgaattagttctAACAAATCTAACTTTTAAAGTTGATCATTAAAAAACATTTCTCCACGTCCATTTCAGTGAGATTATCAATGGCCTTTCTCTGAGCAGCCATCCTTACAGCAACAAATTGTGCTCATATAGCAACAAATTTCTCCCTTGGAAGCCCCTAGACACTG--AGGCCTGGGGGCAAC---------------CCTCCACCGTCCATGAGAGAAACACCAGCCTTAATGTGGGCCCTGGGTTCACACTCACTGGTGG------------------------AGCAGCTGCGGCCCCG--CTTCGGGGGCAGGAAGCACAAGAGAGTGCGCCGAGCAGAAGCCAGGCCAGATGGGCCACATGCGGGCCACGAAGGCCAGGA-GCTGTTGCTCAGCATGGCCTTACGGGCCAGTCCTTCTGAGGCCTCTGCCATGG------------------CCAGAGGGCAGCATTCACATTCAGCTCTACACAAACATGATATAAGGTCAAGTGTCCCTGTGGAGCCTGGCAC-TGGCTGG-CCCTTCCTGTTCGTTTAGGATCAGATTTTCTCACTTT-------------------------------------AATGCCTCCTGG-------CAGAGGACCTCAAGTTACCCA-CACTTTGAGTGCATTTCCAAGGCTTTTTTCATTATTAGTGTTTTTCTTTGAGGTTTACAGAGATCCTGATATGGAGTGAATTGACAGAGAAACCTAGAATAATTGAGTCATAAAAGTTGTATATTCTCGAGTCTTTCGATGTCCCCTTGAGTCTTGGGTCTAAAG s panTro1.chr6 161430122 1374 + 161576975 CCTACAACATTTTCATGCTCAAATCA--GTGTCCATTTTACTAGCGTTAACTACTTTTATTTAGAGATTTGACCTCTGAGATGAATGATGGTCATTTAGTCCTGCAAAGAAACACGTGGAGATATGTCAGAAGACGA----AGCAACACGTAGGCTGAAAATGGCGGCAGCTGCA-----------TAGAGAAAAGAATCCCAGTCACTCCTCACTTTGGCCGGAGGCTCCCAGCTCCTCTCCCTCCATCGTTTCTCCTGCTAACACATCCCCAGGAGCAATTCTGGGGAGACTGCATGGAGCTGTGGTTATTTGAGGGTTTATTTCAT-GGCCCTAAATGCTTGTTTTGCAGTGACAGCAAAACTGAAAAAAGTAATCTGTAATCAGAACTTCCATGAGGTCAGGGTTTGGATTCAGCTTTTAATGAGTGCTTAGAGGTAACAAATCAGAGTAGATGTTAAGAAGCACGTTTG--ACAAGATTTTAGAAAGAACAGTCATAGAATTCTGGCATCGT-GAGCTGGGAAAGATTGTCAAGTGTTTAGAGCTGGAAGATACTCT-GTGTGACATAGTGAACCCGGC---------ATCT----CAC----aggtcaagagactttt-tcaagttacacaggtagaatcagagccgaaactccatccaggtctccagcacccaggcctgtgttttctccattgaacTGAATTAGTTCATACAAATCTAACTTTTAAAGTTGATCATTAAAAAACATTTCTCCACGTCCATTTCAGTGAGATTATCAATGGCCTTTCTCTGAGCAGCCATCCTTACAGCAACAAATTGTGCTCATATAGCAACAAATTTCTCCCTTGGAAGCCCCTAGACACTG--AGGCCTGGGGGCAAC---------------CCTCCACCGTCCATGAGAGAAACACCAGCCTTAATGTGGGCCCTGGGTTCACACTCACTGGTGG------------------------AGCAGCTGCGGCCCCG--CTTCAGGGGCAGGAAGCACAAGAGAGTGCGCCGAGCAGAAGCCAGGCCAGATGGGCCACATGCGGGCCACGAAGGCCAGGA-GCTGTTGCTCAGCATGGCCTTATGGGCCAGTCCTTCTGAGGCCTCTGCCATGG------------------CCAGAGGGCAGCATTCACATTCAGCTCTACATAAACATGATATAAGGTCAAGTGTCCCTGTGGAGCCTGGCAC-TGGCTGG-CCCTTCCTGTTCGTTTAGGATCAGATTTTCTCACTTT-------------------------------------AATGCCTCCTGG-------CAGAGGACCTCAAGTTACCCA-CACTTTGAGTGCATTTCCAAGGCTTTTTTCATTATTAGTGTTTTTCTTTGAGGTTTACGGAGATCCTGATATGGAGTGAATTGACAGAGAAACCTAGAATAATTGAGTCATAAAAGTTGTATATTCTCGAGTCTTTCAACGTCCCCTTGAGTCTTGGGTCTAAAG s canFam1.chr16 22889729 1409 + 60307850 CCTACAAAATTTTCAAGTTCACACCACTGTGTCCATTTTACAAGCATTACATAATTTTATTTATAGCTTTGACCTCTGAGAGGATTGGCAATCATTCAGTCC-ACAAACAAGCACATGAAAATACACCAAGAGGTGACCAGGGTAACGTGTGTGCTGTGCGTGGAGGCAGCCACAGCCTCGCCTCCTAGAGGTCAGAGTGCC---TACACCTTCCTTGA---GGGGGCGGCCTGCTCC------------------------------ACCCCAGGGGCCCTGCTGGGGAGCCTGTAGGGAG-TGGCCTTATTTGGGAGTTTATTTTATCCTTCTTAAATGCTTGTTTTGCAATG--------------AAAAAGAATGTGCAATTAG--------TAATGTCAGGGTTTACATGTGGCTTTTCTT--ACACTCTGAGGTACCAAGTTAGAGGA-ATGTTAAGAAGCAAATTTAATATAAGACTTTTAAACGAGTGTTTGTAGAATTCCAGCAGAATGGAGGTGGGAAAGACTTTGGAGTCCGCAGAGCTGGAGAGTGCCCTCGCATGACTGGGGACGTCCTTCCTAGTGAAGATTtggagtacagtgaggttgagaagcttttctcacttcacacaggttg--tcagaacagaga--------------ccagcatccaggca-atGTTTTTTCCATTTAACTGCATTGGTTTGGACAAATCTATTTCAAAAAAGTTATTGTTTAAAAGCATTCCCCCACATCCGTTTCAATGAGGTTATCAATGGCGCTTCTCCAAGTGGTTATCTT---------------------TATAACAACACATCTCTCCCTTGGATGCCCTTGGAGATGGAAAAGCCTGGAGGCAACTTGTGTGTTGCTCATCCTCAGTCAACCATGGGAAAAGCTCCAGAACTG--GCAGGCATTGTGTTTACACCTGCTGATGGCAGAAGGCCTAAATATTAGGCCCCACCCGCTGGGGTCCCAGCTTTCAGGGCCACTAGCTATGATGGGCGGCACCAAACCAAGGCAAGCCTGAAAGGACCACATTTGCACCACGGAGGCCTCCACACACTTCCTCAGCATAGCCTGACTAGTCAGCCCTCCTGAAGTCTTTGGCAGAGTCACCAACGTCAACACATCCACAGGGCAGCATTCATATTTTATTCCACATAAACTCGAGATAATGTAAAAAG-CCTCATGGAAATGGGCATGTGGCTGACCCCTTGCTGCTGGTTTATGATCAGTTGTTGTTGTTTTGTTTTGCTGTGTTAAGGTCCCTCTGATCAAGCTTAGAAGGTCCCTCTGATCAAGTTTAGAAGGCTCCAAGTTGCCCAGGATGTTGAGTTCAGATCCAAGACTTTTCTCATTATTAATATCTTTCTTTGAGAGTTATAGGGATCCTAATACAGGGTGAATTGGCAGGGAAATCTATAGTGG---------AAGATTTGTGT-TCCCCAGGTTTTTCAATGTCCCCCGGAGTTCCAGCTTTAAAG a score=582.0 s hg17.chr7_random 73276 6 + 778964 GGTCTC s panTro1.chr6 161431496 6 + 161576975 GGTCTC a score=122009.0 s hg17.chr7_random 73282 905 + 778964 AAGCCTGG-----------------------------------CTGCTTAGATGTAGCTGTAATTGTCTGTTTGTCTGGAAGATGATTACACAGGGAGCAATGGAAACACGTTCAACTCTGGGGCTTCAGAGACAATGCGTAGGCCATGCATATCCTGGATTTCCAAACTCCTATGACCATTTCACAAAACTCTGTCAAATGTAGACTTTATTAGGGAAGATGCAGGTTCCAGGGAAAGCAAAGGAGGAAGGATCACAGGATCTGGTACAAGGCACC-AAAGACCTCC--ATCCCATCACCCAGATTGTCCAGGCCCAGATTCGAGATTGACCATGGCAGAGAAGGGGGCTGCTGTGCATGGAGCCAGGACAAAGGTGATGGTAGAAATATCC--CCAACAGAAGGAAAGGAGCCCAGCGGGAAGGAGG--CAGCC--CACACAGCAGGTGA----------TGCACACGG------CATGCAGGGCGTCCCTCGGACTCTGCTGGGGCCCGACTCAGAGAGACAATGGGAACACAAGGCAGACGCGCACCTGCCCAAGGCCAGATGAGACAATGGCAAACACGTACA-TTTTTCTCTCTCTGGGTCCTGAAGAGCCTCTGAAGCTTG---CTCCAAACTACAACTTTCTGTGGTGGGAACACACACAT-AGCTATGCCCTCAGACAGCTTATGGTTTACCAGTGAAGGTAAATAGGAAATCATGTGGTCGGGCCAC---CACAGAGGCCGCTGCGTTTTTCAggagtttgggaaaggctttctagaggaatcaaccttcaagctgagacccaagtaatgatagggacttagac-----aaagattgtttgagaaagaaaaattatacgacatgtgctgaagcc-tgtaggagaagaagaatgtgtgcactgatgcccaaaacgtggccctggtggctggaacatgg----tgcaaaggagagagagaggggggacagcatgg-------- s panTro1.chr6 161431502 902 + 161576975 AAGCCTGG-----------------------------------CTGCTTAGATGTAGTCGTAATTGTCTGTTTGTCTGGAAGATGATTACACAGGGAGCAATGGAAACATGTTCAACTCTGGGGCTTCAGAGACAATGCGTAGGCCATGCATATCCTGGATTTCCAAACTCCTATGACCATTTCACAAAGCTCTGTCAAATGTAGACTTTATTAGGGAAGATGCAGGTTCCAAGGAAAGCAAAGGAGGAAGGATCACAGGATCTGATACAAGGCACC-AAAGACCTCC--ATCCCGTCACCCAGATTGTCCAGGCCCAGATTCGAGACTGACCATGGCAGAGAACGGGGCTGCTGTGGATGGAGCCAGGACAAAGGCGATGGTAGAAATATCC--CCAACAGAAGGAAAGGAGCCCAGTGGGAAGGAGG--CAGCC--CACACAGCAGGTGA----------TGCACACGG------CATGCAGGGCGTCCCTCGGACTCTGCTGGGGCCCGACTGAGAGAGACAATGGGAACACAAGGCAGACGCGCACCTGCCCAAGGCCAGATGAGACAATGGCAAACACGTACA-TTTTTCTCTCTCTGGGTCCTGAAGAGCCTCTGAAGCTTG---CTCCAAACTACAACTTTCTGTGGTGGGAACACACACAT-AGCTATGCCCTCAGAGAGCTTATGGTTTACCAGTGAAGGTAAATAGGAAATCATGTGGTCGGGCTAC---CACAGAGGCTGCTGCGTTTTTCAGGAGTTTGGGAAAGGCTTTCTAGAGGAATCAACCTTCAAGCTGAGACCCAAGTAATGATAGGGACTTAGAG-----AAAGATTGTTTGAGAAAGAAAAATTATACGACATGTGCTGAAGCC-TGTAGG---AGAAGAATGTGTGCACTGATGCCCAAAACGTGGCCCTGGTGGCTGGAACATGG----TGCAAAGGAGAGAGAGAGGGGGGACAGCATGG-------- s canFam1.chr16 22891339 919 + 60307850 AAGCCTGGGGCCTCCCACTCCCCACCACCCTCTTGGCCCACCTCCCCCTAGATGTATTTG--ATTGTCTGTTTAATTGAAATGTGGTTGGTTAGGGGGCAGCTGGAACAATTGCAACTCCAGGACTTCAGTCACAGTGGGGAGGCCACACACACTCTGAATTTCCAAATTCCTGTGAC----TTGTAAAGTTTTGTCAAACATTTGTTTTACC-GGGAAGGAGTGGGTTCTGAAAGAAATAAAGAAAGAAGCACCACAGAATCTAATGCAAGGAGCCTGAAGATCATCTGGTGCAAGTATAGAGGACACCAGTTCTCAGCTTAGAAATCG-CCATGCCCAGGGAAGGGGCTGCTGGGGATGGAGCCCGGGCATAGCCCATGGCAGCAAGTTCTTGCAAGCAGAGCGGAAGAAGCAGAGCGGGAAGGAGAGCCAGCCAGCACTCTGAAAGTGAGTTCAGTGTGTCCACATGAGGTCTCCAGACAGAGCCTAC-----ATTCTGCTGGGGCTCAGCTCAGAGGGATGCTGGCAGCA-----------------TGCC----ACCACGCTAGGCAATTGTTAACATCTGTGTTTTTTCTGTGTGTGATCTCCGAAGGGCCTCTGATGCTTGAATCTACACACTATGAATT--CGTGGCGGGAATACAAACACAAGCTGTGCTCTCAAAGAGCTTATG-------AGTGA---TAACCAG-------TGTGAAGAGGCTACATTCCCCAGGACCCCT---------AGGATTTGGAAAAAGGCTTCCTAGAGGAACCAACTTGTATGCTGAGGCCCAAGAGATGATAAGGACTTAGACTACAAAAACAGTATCTGAAGGGGAGGTATCA-AAAACCTCCCCTGAAGCTGTGGAGAAGGAGAAGCACTTGAGAGCTGA-----AGAA---GGCCATGGTGGCTGGGACATAGGGTCTGAAGAGGGCTCAGGGAAAAGATAAAG-ATGTAGTCTCTG a score=443.0 s hg17.chr7_random 74187 12 + 778964 tgcaaaggagag s canFam1.chr16 22892258 12 + 60307850 TCcaaagggcaa a score=5094.0 s hg17.chr7_random 74199 87 + 778964 -aagaga------gaggggacagCATGGTGCAaaggagagagagatgg----------gggatagcatggtgcaaaggagagaggga---gggagagcatggtgtaa s panTro1.chr6 161432408 85 + 161576975 -AAGAGG------GGGGGGACAGCATGCTGCAAAGGAGAGG-----GG----------AGGACAGCATGCTGCAAAGGAGAGAGAGAGAGGGGACAGCATGGTGCAA s canFam1.chr16 22892270 90 + 60307850 taggaaaccctgcagaggcacagtgctctg----ggagagaatggtggtgactcgaacaggacag---gaggccagggatggagaga----------aatggcgtga a score=5786.0 s hg17.chr7_random 74286 85 + 778964 aggagagagagagagaggggacagcatggtgcaaaggagagaggtgggggacagcatggtgcaaag----gagagagagagggGACAGC s panTro1.chr6 161432493 80 + 161576975 AGGAGAGAGAGAGAGAGGGGACAGCATGTTGTAAAG---------GGGGGACAGCATGGTGCAAAGGAGAGAGAGAGAGAGGGGACAGC a score=10304.0 s hg17.chr7_random 74375 178 + 778964 TGCAaaggagagaagagagaggggacagcatggtgcaaaggagagagagagaggggacagcatggtgcaaaggagagagagag--gggacagcatgatgcaaaggagaga-agagagaggggacagcatggtgcaaaggagagagagaggggacagcatggtgcaa----gagagagagagaggg s panTro1.chr6 161432404 163 + 161576975 TGCAAAG--------AGGGGGGGGACAGCATGCTGCAAAGGAGAGGG-----GAGGACAGCATGCTGCAAAGGAGAGAGAGAGAGGGGACAGCATGGTGCAAAGGAGAGAGAGAGAGAGGGGACAGCATGTTGTAAAGG---------GGGGACAGCATGGTGCAAAGGAGAGAGAGAGAGAGGG a score=5295.0 s hg17.chr7_random 74553 44 + 778964 GACAGCCT----------------TGGAGAACAAGATGCAGAATGTGGATTCCCTTCAGa s panTro1.chr6 161432567 44 + 161576975 GACAGCCT----------------TGGAGAACAAGATGCAGAATGTGGATTCCCTTCAGA s fr1.chrUn 317242897 57 + 349519338 GACAACCTNCTTCAGTGGCCCAGACTGGGACCATGATGCAGGAT---AACCTTCTTCAGT a score=111142.0 s hg17.chr7_random 74597 1210 + 778964 gggcgaccagggcccctaaagaaggggtaccaggcaggaggaggtagtagttgttaaccaaaatgagtggctgaggcaggtgtctcagtgaagatttgttgcgccagcttgagagcatgcccaggaaaaaacgtgagtcacagatgcatctatggctattttttcagatgttttcaggatgtttaatatttgtacatttcccttaaaaaatcggggagaaggcagtgaggcaaatggtt-----cttgtgaaactttactcagtgcccagtaaatctgcattttacgtacgctgaacgtttgaagaaaacagagtaaaggaagaatcaattgtgcagatgcacctgtgtgggtggaggaagtactgatctcctcgtgcctttgttctgcctgtgtggaggtaaactagcaatccacattaccactgcagaggtgaacaggctttagctgtatgagctacatttagatggcagacgtagagctacagttgacaggttcatgttttatgggaggatagacagttttaaagtttacaggctggcaaagaatttacttaaagggattttgtgggggcagtcatcccaagacgcctgaggccttttgcctttctgtggaggtctggctaatgcataatgttttgacacaggttttgaagtaacagctattcatctggggagaggacggctgtgtggccgactcagtttccaggcttaactttccctttggcataaggagtttgagggtcctgagattttattttcctttacgtagaccaggagggaaatgaggatggtttgaatgagggtgctggcaatgaggatggcaggaagtgggtagataagtgtagcatttaggagacagagccaagagaatctggtgagtcgctgcctgttggatggtagggagagaatctgtgaaagctgttttccaggtttctggcatgagcaactagatgaatggtaggtagattttgccagttattttctgttccactccaggatccatttcacttgatatgtgcccaggaggtggccctaagacagagaatctggaagaagagaaggctgggagatgaagatgagaagtttggatgtgtctactcaagtccaagtgaagatgttgagaaagcagttctatttacagctcaggggccaagggagagtcctttggaaatCCTTACCTTATATTTCTTTGAAACCAGGGGAATGTGTGGTAG s panTro1.chr6 161432611 1215 + 161576975 GGGCGACCAGGGCCCCTAaagaaggggtaccaggcaggaggaggtagtagttgttaaccaaaatgagtggctgaggcaggtgtctcagtgaagatttgttgcgccggcttgagagcatgcccaggaaaaaacgtgagtcacagacgcgtctatggctattttttcagatgttttcaggatgtttaatatttgtacatttccctttaaaaatcggggggaaggcagtgaggcaaatggttacattcttgtgaaactttactcagtgcccagtaaatctgcattttacatacgctgaacatttgaagaaaacagagtaaaggaagaatcaattgtgcagatgcacctgtgtgggtggaggaaggactgatctcctcgtgccttcgttctgcctgtgtggaggtaaactagcaatccacgctaccactgaagaggtgaagaggctttagctgtatgagctacatttagatggcagacgtagagctacagttgacaggttcatgttttatgggaggatagacattttaaaagtttacaggctggcaaagaatttacttaaagggattttgtgggggcagtcatcccaagacgcctgaggccttttgcctttctgtgggggtctggctaatgcataatgttttgacacaggttttgaagtaacagctattcatctggggagaggatggctgtgtggccgactcagtttccaggcttaactttccctttggcataaggagtttgagggtcctgagattttattttcctttacgtggaccaggagggaaatgaggatggtttgaatgagggtgctggcaatgaggatggcaggaagtgggtagataagtgtagcatttaggagacagagccaagagaatctggtgagtcgctgcctgttggatggtagggagagaatctgcgaaagctgttttccaggtttctggcatgaacgactagatgaatggTAGGTAGATTTTGCCAGTTATTTTCTGTTCCACTCCAGGATCCATTTCACTTGATATGTGCCCAGGAGGTGGCCctaagacagagaatctggaagaagagaaggctgggagatgaagatgagaagtttggatgtgtctactcaagtccaagtgaagatgttgagaaagcagttctatttacagctcaggggccaagggagagTCCTTTCGAAATCCTTACCTTATATTTCTTTGAAACCAGGGGAATGTGTGGTAG a score=1993.0 s hg17.chr7_random 75807 31 + 778964 A--AGGTTAGGGTCAGGAAGGAGCCCTGGGGAG s panTro1.chr6 161433826 33 + 161576975 AGAAGGTTAGGGTCAGGAAGGAGCCCTGGGGAG s fr1.chrUn 317242958 23 + 349519338 --AAGACTGGGACCATGACGCA--------GGA a score=4265.0 s hg17.chr7_random 75838 38 + 778964 CAGCGTCCTCCACGTGTGGCCCA-------------TGAACACAAACATGT s panTro1.chr6 161433859 38 + 161576975 CAGCGTCCTCCACGTGTGGCCCA-------------TGAACACAAACATGT s fr1.chrUn 317242981 34 + 349519338 CAACCTTCTTCA---GTGGCCCA--------------GCCTGGGACCATGA s danRer1.chrNA 106917471 50 + 390413307 CAGCCTCCTCCA-GTGTTCTCCAGCATCTCCTCCAGTGTTCTCCAGCATCT a score=4851.0 s hg17.chr7_random 75876 24 + 778964 --------ACGAGAGCATCCTCCA-GTGTGGCC s panTro1.chr6 161433897 25 + 161576975 --------ACGAGAGCATCCTCCACGTGTGGCC s rn3.chr2 255465519 24 + 258222147 --------ATGACAGCACCCAACA-GTGTGAGC s fr1.chrUn 317243018 22 + 349519338 --------AGGACAACCTTCTTCA---GTGGCC s danRer1.chrNA 106917521 32 + 390413307 TCCAGTGTTCTCCAGCCTCCTCCA-GTGTTCTC a score=21156.0 s hg17.chr7_random 75900 229 + 778964 CTGAACACCACCATGT---ATGACA----------------------------------------GCATCCTCCAGTGTAGACCTGACC----ACCACCATGTACGACATCATCCTCCAGTGTGGCCCCGAAC----ACCACCATGTACAGCAGCATCCTCCAGTGTAGACCCGAAC----ACCATCATGTACGACATCATCCTCCAGTGTGGCCCCGAAC----ACCACCATGTACGACATCATCCTCCAGTGTAGACCTGAAC----ACCATCATGTACAGCAGCATCCT s panTro1.chr6 161433922 269 + 161576975 CCGAACACCACCATGT---ACGACATCATCCTCCAGTGTAGACCTGAACACCACCATGTACAGCAGCATCCTCCAGTGTAGACCTGAAC----ACCACCATGTACAGCAGCATCCTCCAGTGTGGCCCCGAAC----ACCACCATGTACAGCAGCATCCTCCAGTGTAGACCTGAAC----ACCACCATGTACAACAGCATCCTCCCGTGTGGCCCCGAAC----ACCATCATGTACGACATCATCCTCCAGTGTAGACCTGAAC----ACCATCATTTACGACATCATCCT s mm5.chr14 95833751 229 - 117079080 CTGCATCCCACCATGG---GTACCT----------------------------------------ACATCCTACTATGGGCACCTAAAT----ACCACTATGGATACCTTCATCCCACCATGGGTACCTGTAT----CCCACCATGGATACCTGCATCCTACTATGGCTACCTGTAT----CTCACCATGGGTACCTACATCCCACTATGGGTACCTACAT----CCCACTATGGGTACCTACATCCCACTATGGGTACCTAAAT----ACCACTATGGATACCTACATCTC s rn3.chr2 255465543 228 + 258222147 --ATCAACAACCATAGT-CATGACA----------------------------------------GCACCCAACAGTGTGAGCATCAAC----AACTGTACCAATGACAGCACCCAACAATGTGAGCATCAAC----AACCATAGTCATGACAGCACCCAACAATGTGAGCATCAAC----AACCATAGTCATGACAGCACCCAACAGTGTGAGCATCAAC----AACCATAGCCATGACAGCACCCAACAGTGTGAGCATCAAC----AACCATAGCCATGACAGCACCA- s fr1.chrUn 317243040 237 + 349519338 CAGACTGGGACCATGACGCAGGACA----------------------------------------ACCTCCTTCAGTG---GCCCAGACTGGGACCATGACGCAGGACAACCTTCTTCAGTG---GCCCAGACTGAGACCATGACGCAGGACAACCTCCTTCAGTG---GCCCAGACTGGGACCATGACGCAGGACAACCTTCTTCAGTG---GCCCAGACTGAGACCATGACGCAGGACAACCTCCTTCAGTG---GCCCAGACTGAGACCATGACGCAGGACAACCTCCT s danRer1.chrNA 106917553 229 + 390413307 CAGCATCCTCCAGTGT---TCTCCA----------------------------------------GCATCCTCCAGTGTTCTCCAGCCT----CCTCCAGTGTTCTCCAGCATCCTCCAGTGTTCTCCAGCAT----CCTCCAGTGTTCTCCAGCATCCTCCAGTGTTCTCCAGCCT----CCTCCAGTGTTCTCCAGCCTCCTCCAGTGTTCTCCAGCCT----CCTCCAGTGTTCTCCAGCATCCTCCAGTGTTCTCCAGCAT----CCTCCAGTGTTCTCCAGCATCCT a score=-6451.0 s hg17.chr7_random 76129 125 + 778964 CCAGTGTGGCCCATGAACA--CCACCATGT--ACGACAGCATCCTCCAGTGTAGA---------CCTGAACA----CCATCATGTACAGCAGCATCCTCCAGTGTGGCCCATGAACACCACCA-TGT--ACGACAGCATCCTCCA s panTro1.chr6 161434191 126 + 161576975 CCAGTGTGGCCC-CGAACA--CCACCATGT--ACAGCTGCGTTCTCC-------ACATTTGGCCCCTGAACAG-TTC---CATGTATGGCAGCATCCTCCTGTGTGGCCCCTGAACACCACCG-TGT--ACAGCTGCGTTCTCCA s mm5.chr14 95834081 106 - 117079080 CCATTGATACCTACCTACATCCCACCATGG--GTACCTGCATCCTACTATGGGCA---------CCTAAATA----CCACTATGGATACCTGCATC---------------------CCACCA-TGG--GTACCTACATCCCACT s rn3.chr2 255465771 123 + 258222147 ACAGTGTGAGCA-TCAACA----ACCATAGCCATGACAGCACCCAACAGTGTGAG---------CATCAACA----ACCATAGCCATGACAGCACCCAACAGTGTGAGCATCAA---CAACCA-TAGCAATGACAGCACCCAACA s fr1.chrUn 317243277 126 + 349519338 TCAGTGGCCCAGACTGAGA--CCATGATGC--AGGACAACCTTCTTCAGTG---G---------CCCAGACTGAGTCCATGACGCAGGACAACCTCCTTCAGTGGCCCAGACTGAGTCCATGA-TGC--AGGACAACCTCCTTCA s danRer1.chrNA 106917782 123 + 390413307 CCAGTGTTCTCC---AGCCTCCTCCAGTGT--TCTCCAGCCTCCTCCAGTGTTCT---------CCAGCATC----CTCCAGTGTTCTCCAGCCTCCTCCAGTGT--TCTCCAGCCTCCTCCAGTGT--TCTCCAGCCTCCTCCA a score=-1611.0 s hg17.chr7_random 76254 7 + 778964 GTGTAGA-- s mm5.chr14 95834187 7 - 117079080 ATGGGTA-- s rn3.chr2 255465894 7 + 258222147 GTGTGAG-- s fr1.chrUn 317243403 5 + 349519338 --GTGGC-- s danRer1.chrNA 106917905 7 + 390413307 --GTGTTCT a score=-5328.0 s hg17.chr7_random 76261 66 + 778964 CCTGAACACCATCATGTACGACATCATCCTCCA-GTGTGGCCC---CAAACACCACCATGTA-----CAGCCACG s panTro1.chr6 161434325 67 + 161576975 CCTGAATATTTCCATGTACGGCCGTGTCCTCCAGGTGTGGCCC---CAAACACCACCATGTG-----CAGCTGCC s mm5.chr14 95834194 66 - 117079080 CCTAAAAACCACTATGGATACCTACATCTCACC-ATGGGTACC---TGGAGCTCACCATGAG-----TACCTGCA s rn3.chr2 255465901 60 + 258222147 CATCAACAACCATAGCCATGACAGCACCCAACA-GTGTG---------AGCATCAACAACCA-----TAGCCATG s fr1.chrUn 317243413 65 + 349519338 -CTGAGT-CCATGACGCAGGACAACCTCCTTCA---GTGGCCCAGACTGGGACCATGATGCA-----GGACAACC s danRer1.chrNA 106917912 66 + 390413307 CCAGTCTCCTCCAGTGTTCTCCAGCCTCCTCCA-GTGTTCTCC-----AGCATCCTCCAGTGTTCTCCAGCC--- a score=2658.0 s hg17.chr7_random 76327 7 + 778964 TTCTCCA s panTro1.chr6 161434392 7 + 161576975 TTCTCCA s mm5.chr14 95834260 5 - 117079080 T--CCCA s fr1.chrUn 317243478 7 + 349519338 TTCTTCA s danRer1.chrNA 106917978 7 + 390413307 TCCTCCA a score=0.0 s hg17.chr7_random 76334 22 + 778964 CATTTGGCCCCTGAACACCACC a score=-4319.0 s hg17.chr7_random 76334 10 + 778964 CATT----------------------------------------TGGCCC s panTro1.chr6 161434399 50 + 161576975 CATTGGCCCCTCAATAGTTCTATGTACGGCCGTGTCCTCCAGTGTGGCCC s mm5.chr14 95834265 10 - 117079080 TCAT----------------------------------------GGGTAC s fr1.chrUn 317243485 7 + 349519338 G-------------------------------------------TGGCCC a score=1489.0 s hg17.chr7_random 76344 12 + 778964 CTGAACACCACC s panTro1.chr6 161434449 11 + 161576975 C-GAACACCACC s mm5.chr14 95834275 12 - 117079080 CTAAATCCCACC a score=3001.0 s hg17.chr7_random 76356 12 + 778964 GTGTACAGCTGC s panTro1.chr6 161434460 12 + 161576975 ATGTGCAGCCGT s mm5.chr14 95834287 12 - 117079080 ATGGGTACCTGC s danRer1.chrNA 106917985 12 + 390413307 GGGTGCAGCTGC a score=407.0 s hg17.chr7_random 76368 19 + 778964 GTTCT-CCACG------------------TTGGCCCCT s panTro1.chr6 161434472 20 + 161576975 GTTCT-CCACAT-----------------TTGGCCCCT s mm5.chr14 95834299 38 - 117079080 ATCCCACCACGGGTACCTGCATCCTATTATGGGCACCT a score=7876.0 s hg17.chr7_random 76387 48 + 778964 GAACAGTTCCATGTATGGCAGTGTTCTTTCCTgtgtggcccctgaatc s panTro1.chr6 161434492 48 + 161576975 GAACAGTTCCATGTATGGCAGTGTTCTTTCCTgtgtggcccctgaatc s mm5.chr14 95834337 45 - 117079080 AAATACCACTATGGATACCTGCATCCCATCATG---GGTACCTGCATC s canFam1.chr16 22892757 47 + 60307850 ggacactatcctgtaaggcagtgtt-tcccaagtgtggtccaccagtc a score=57659.0 s hg17.chr7_random 76435 396 + 778964 -atggcatcag-atcacttggaatccttcttcaaattcacattcttgggcttcTGCATTAAggatagaagaggaagagataacaaatgagactgagcagtggtggttggggagttggtaagaacaccaggaa---aatgtagtcatgggagcatcagggatatgaatgtttcaagag------------------tcaccg----tgagagatcattcaacttgaggactgacacatgtccactggattcattgacatgaaaatcatgaatgaccttggcaaggtcacactcagaggagtggtcca---------caggctgagtggtttgtgatgtgtgttcagggtgaaatgatgcagactgcatctagacagtgcatacaggaagtgtggctgtaagtgacaagagaaa-ggttggcagctgaaggagat s panTro1.chr6 161434540 397 + 161576975 -atggcatcag-atcacttggaatccttcttcaaattcacattcttgggcttcTGCATTAAggatagaagaggaagagataacaaatgagactgagcagtggtggtcggggagttggtaagaacaccaggaa---aacgtagtcatgggagcatcaggaatatgaatgtttcaagag------------------tcaccg----tgagagatcattcaacttgaggactgacacatgtccactggattcattgacatgaaaatcatgaatgaccttggcaaggtcacactcagaggagtggtcca---------caggctgagtggtttgtgatgtgtgttcagggtgaaatgatgcagactgcatctagacagtgcatacaggaagtgtggctgtaagtgacaagaaaaagggttggcagctgaaggagAT s canFam1.chr16 22892804 407 + 60307850 cctggcaccagaatcactggggatgtctgtgaaaatgccgagtcttgagcctctgctttaaaga------gggaagagatgacaaatgagagcacggaatagcagttagggaggtatttagaataccaggaattgtgtggagtcacagaagcagcaagaatatggacatgtccagagggtagggcagttatatgttcaatgctgctgagaaatcacc-----------ctcaagtgtgtctgttggatttgctatc------atcatggccaacactggcgaggtgggcttcagagaactgctataaacacaagccaggctggttggcctgtgaagtgtgttcaaagtgaaatcatgaaactcgagttgagacaatgcatctgagagcttcg--cataagtgcaaagagaaa-gatgagcaactgaaggagat a score=3000.0 s hg17.chr7_random 76831 258 + 778964 atgggaagtgccagattttggtttatgcttgtttttaagaatgagaaaCCTACATCATAATGGGA-GGAGCTGATGGAGAAATAGACGTTGAAGCTGATTAGCTTATTTTCCTttacatagtccaggagggaaatgagggtggtttgaatgagggtggtggcaacgaggatggcaggaagtggGTTGAAACTGATTGGCTGATCAAAATCCTTTAGAAAGACAGAGTCCCAGGCACAGGTGA-AGAATTTAGTTTTGCAT s canFam1.chr16 22893211 155 + 60307850 gtgaggaatatcag-----ggtttcagtttgttttaagatgagagaaaCTTAAATCGTGATGGGAAGGAACTGATG----AATAGATGTTGAAGTTGATT------------------------------------------------------------------------------------------------GGCTGATCAAAGCCCCTTAGAAGGATAGGGTTCCCCATACAGGGGAGAGAAAAGCCTCTTGCAT a score=2951.0 s hg17.chr7_random 77377 43 + 778964 gggattataggcgtgagccaccacgcccggc-AGTAGGATTCTT s panTro1.chr6 161435490 44 + 161576975 GGGAGTATAGGGGGGAGCCGCCACGCCCGGCGAGTAGGATTCTT a score=216588.0 s hg17.chr7_random 77420 1463 + 778964 TTTAATAACAAGATTATTTTGTGATCATCCACATTCCTCTTGAGCACATTCAGGGCTAAGAAATCCCTCATGCTTTCAACCAAAGGCCAGCAAGAGCAGCTTTGAACAGTTCTGAATGAGCCAAAATCTCCTCCTGAGTTTTCTTTTCCTTGGTTGTCACTCTTCCTTGGGGGTCTTCTAGAACAGATATAATTCCTCCTCCCCACCATGGAATTTCAAGTGTCAT-TTTTCCTTTGTGTTCACAAGTTCCCTTGCGTGTTTCGTGAGCTATATCCCTTTCCCATTGGCCATTCTAGACATCTCAGTGGGCATCTTAATTTATGGTGCCCAGAACCCAATGTCACACTATATTTCACAGTCCTGAAGGAGACCAGATGCCTCCACTCATGACAGCAATAGTCTGAGTCCACTGATTTGAGAGGTGTGTTGTTTTTGCTTCTGCATATGT---------TCTTAGTTTAATATTTGGCTACTATAAAATAACAAAGAAAATGAAGGAAAAATATGGCCTCTGCTCCAAGAGTTGAATAGTATCATGGGAACTCAGTGACTCTGGATTCACTAAGAATAAATCTTTCCAGGCTAGTTTCCTTATTTTTTT----------CAGATTTATGAAAATATAGCCATCACTGATATCTCTTATACAAACAAAACTTT--AACAAATTCAACTACTGTATAAACTAGTATTAAAAATCACTAGAAGGTCATTGAGTAGTGGATTTGCATATAATCCTGAGTGTAAATGATGTCGACACACATTCCCATACAATGGCATGTATATGATACGTTATGATTTGCTAGCAAAGCATTGCTGATGGTAAAAGCTAAATCCTGGCTGT------------------GTGTTTTCATCCAGAGAAACTTTAACAGTCCATTTCT----TCTATGGCATATTTCCAGAGGTTAATCCCAGAAGAAATGATAAATTAATTTGGCCCAGAGTAAGTATAATCAGCTTGGTTTAAATCTGACTA----------------------GAAAACCAGGGGGTTGGAGGGAGGTGTAAGCATTGTGGAGGGCAGTCTTTCATTTATTCCTCTACTTCCAAGTCTGCAGGGAAACATTTAAGAAAAACTACTATCTTCCTTTTCTTTGAACTCCCCAGAGTCCTTTACAAACTTTGAAT-GGGGAGCCCCAGCCTGGGTCATGAACCAGCACCCAGTGGGACCTGTATTCACTGCAAG-GCCCATTTCTCCTGCAGTGAGCATCTCTCTCTCTCTCTCTC---TTTTTTTTTTTTTGtgtgtgtgtctgtcca-gcatccagtcattcttcctaagatgacagcaatgggattttcctgggggaatcacccattctccata-ttcccaggagt-ggccacaactcggccctggccctctgggctctgcatcgcctctggctacca-----cagttagtgcagggttgggctt-gtggccttagtggagccaagaaaaca--taatttctgtgtttggac-aggattat-agggaagtggaaatccctcc s panTro1.chr6 161435534 1474 + 161576975 TGTAATAACAAGATTATTTGGGGATCATCCACATTCGTTTGGAGCACATTCAGGGGTAAGAAATCCCTCATGCTTTCAACCAAAGGCCAGCAAGAGCAGCTTTGAACAGTTCTGAATGAGCCAAAATCTCCTCCTGAGTTTTCTTTTCCGTGGTGGTTACTCTTCCTTGGGGGTCTTCCAGAACAGATATAATTCCTCCTCCCCACCTTGGAATTTCAAGTGTCAT-TTTTCCTTTGTGTTCACAAGTTCCCTTGCGTGTTTCGTGAGCTATATCCCTTTCCCATTGGCCATTCTAGACCTCTCAGTGGGCCTCCTAATTTATGGTGCCCAGAACCCAATGTCACACTATATTTCACAGTCCTGAAGGAGACCAGATGCCTCCACTCATGACAGCAATAGTCTGAGTCCAGTGATTTGAGAGGTGTGTTGTTTTTGCTTCTGCATATGT---------TCTTAGTTTAATATTTGGCTACTATAAAATAACAAAGAAAATGAAGGAAAAATATGGCCTCTGCTCCAAGAGTTGAATAGTATCATGGGAACTCAGTGACTCTGGATTCACTAAGAATAAATCTTTCCAGGCTAGTTTCCTTATTTTTTT----------CAGATTTATGGAAATATAGCCATCACTGATATCTCTTATACAAACAAAACTTT--AACAAATTCAACTACTGCATAAACTAGTATTAAAAGTCATTAGAAGGTCATTGAGTAGTGGATTTGCATATAATCCTGAGTGTAAATGATGTTGGCACACATTCCCATACAATGGCATGTATATGATACGTTATGATTTGCTAGCAAAGCATTGCTGATGGTAAAAGCTAAATCCTGGCTGT------------------GTGTTTTCATCCAGAGAAACTTTAACAGTCCATTTCT----TCTATGGCATATTTCCAGAGGTTAATCCCAGAAGAAATGATAAATTAATTTGGCCCAGAGTAAGTATAATCAGCTTGGTTTAAATCTGACTA----------------------GAAAACCAGGGGGTTGGAGGGAGGTGTAAGCATTGTGGAGGGCGGTCTTTCATTTATTCCTCTACTTCCAAGTCTGCAGGGAAACATTTAAGAAAAACTACTATCTTCCTTTTCTTTCAACTCCCCAGAGCCCTTTACCAACTTTGAATGGGGGGGCCCCAGCCTGGGTCATGAACCAGCACCCAGTGGGACCTGTATTCACTGCAAG-GCCCATTTCTCCTGCACTGAACATCTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTTTGGGTGTGTGTCTGTCCACGCTTCCAGTCATTCTTCCTAAAATGACACCACCGGGATTTTCCTGGGAGAAACACCCATTTCTCATA-TTCCCAGGAGTGGGCCACAATCCGGCCTTGGCCCTCTGGGCTCCGCCTCCCCCCTGGCCACCAACAATTAGTTAG----GGGTTGGGCTTGGGGGCCTTAGGGGAAACAAAAAAA-ATTTATTTTCTGTGTTTGGACAAGAATTATAAGGGAAGGGGAAAACCCCCC s canFam1.chr16 22893366 1376 + 60307850 CTTAATATCAAGACTGTTTCCtgttca-ccagattcctctggaatcca-ccaaggctgagaag-catcaatgctttcaaccaaaggcaacacaggttacctctggacagctctgactgagccaaaatcccttcctgaattttctctgccttggtcctaatttaaccttagggactt---aggataaacataatccaccttccacgttacggaacttcaagtatcatacttccctgtgtcttctc---------------tttaatgggataaaTTCCTTTACTATTGGCTGTTCTGTGCCCCTCACTGGGCCTCTTAATTTAGGGCACCCAGAGCTCAGTACTACACT-----------TCCTG----------GGTACCTCCACT-ATGGAACCAATAATCCCTTTCCACTAATTTGAGAGGTGTGTTGTTTCTGCTTCTGCACGTGTAATTCCAAATGTTCACTTGATATTTGGCCACTATAAAATAACAAAGAAAAGGGA-GAAATAGATGACGTCT-CTCTAAGAGTTGAATGGTATTATGGGATCACAGTGACTCTGGATTCACTAAGAATAAATCTTTCTAGGCTAGTTTAACTAATTCCCCCCCACACACACCGATTTATGAAAATATATCCGTCAGTGTTATCTCTTGTACAAACAAAATTTTTAAAAACATTCATCTCCTGTATAAAGCAGTATTGAGTGTCGTCAG------GTCAAGTGATGGGTTTGTATATAATCCTGAG-----ATGATATT-------------------TAGCA--TATACTATGTATCAAAATCTGACCACAAAACACTGCCGGCAGAAAAAGCTGAATCCTAACTGTTTTGAAAGATACCAGAAGGTAGTTGACACCAGAGAAACTTTAAGAGTCCATTTCTCGAGTATTTGGCATATTTCTAGATGTTAATCCTAGAAGGAATGATAAATTAATTTGGCTGAACAGAGGTATAATTAGCTTGGTTTAAATCTGACTATCTGACAGATGGCCACTGGTGGGAAAATCAGTGGGCTGGGGGTGTGTGTGATAA---------------TATAGTTTATTACTCTACTTCCAAGTTTACAGGAGACCATTTAACAGAAACTGTTATCTCC---TTCTTTGAAGTCCCCGACACCCTTCCCC--------AT-----AGGCCCAGGCCGAGTCAGGAGCCAGCACTCAGTGGTG-AGGGATTCCCCGCAGGAACCTTTTTCTCctgttgtttgcat-----------tcgctc--------------------------ctgtttg-----ccagtcactcttcttgtgaagacagcaccctgatttcctttggtgaaccacgtgtactccacattttccaggact-tgccatgacccagcgctggccatccaagaattac--ccgtcctggctactg-----caatcacctcagtgatggacac-gtggtcc--gaagagccaatgaaa-------ctcctgccttgggac-aggatgat-agggaagggaaagtgcctcc a score=5498.0 s hg17.chr7_random 78883 419 + 778964 tttctgccggagttgctgagagaccagcgtgtgaacc---tggctctgatgacagcggtgttcacggagcagggatccgggagagggagcagataagcagggaggagagatgg---CCCTGTCTTCATGACGCCACTGCCCAGGAC-ACTAGCACC----GACCTTCCAGTGACTGTCAGTGAAGCCAACGT----------------------------TTGTGTCACCTGCCACA--ATGTGTCTCTACTGTGCATCTTGCTTTGTGTTCCTGGTGCCTGGAC-------TTGGGTCTCGCCTGCTTGCAGCTGCCCGCGGGCGCC-GAGCCTGATGGTCGTGCTGCTCCTCTGATGCCGACCCTGACTTCTCTCCAAGGCTACCACTTGTGCTCACCCA-CGGACTGTGTCTAATTCTGGCTGTGCTGGGCA---------------CAAGCTTCGCTG-GGTATTGCTGCTGTGTTGCCCA s canFam1.chr16 22894742 460 + 60307850 tttcctttggcattgctcaggggagggcccgtaagccATGTGGCCC----GAGAGGGGAGCTGACGG-----TGAGCCAGGTGAA---------CAGGAAGGAGGAGAGACGGAGACCACGTCCCCATTACATCACTGTCCACAACCACTAACTctcctggacttcgcagtta-tatgagtaagaaaaatttgatttttgcaagttggttttagtttaacttatatcatctgtcacagaaagcatcttgactaGAGATGCTGCTTTGTGTTCTTGCCTCCATGTCCAACCTCTCTCGTCTTACTCACTGACCGAGACCCACGGGCTCCTGCACTTGATGGCCA--CTGCTCTTCAGATGTTGGCTGTGGCTACACCGCAGGGCCACAGCTTGTTCTCACCCCTCGGGCAACAGCTAATTCTGGCTGT-CTGGGTGGCAGCCAGCAGCATCCGAGCTTGGCTCCTGTTTTGT--CTGTGTTGCT-G a score=927.0 s hg17.chr7_random 79302 9 + 778964 GGGAACTGG- s mm5.chr13 53877979 9 - 116458020 GGGAACTGA- s canFam1.chr16 22895202 10 + 60307850 GGAAACTGCA a score=9942.0 s hg17.chr7_random 79311 51 + 778964 GGCAGACAAGGGAAGCTCATAG-CTCCTTTAGTCAAGGATTCTCATGTTTCC s mm5.chr13 53877988 51 - 116458020 AGCAGACAAGGGAAACGCTTCC-CTGCTTTGGCCAGAGTTTCTCCTGCCTCC s rn3.chr10 49443631 51 - 110733352 GGCAGAAAAGAAAAGATCACAG-CTTCTTTAGACAAGGACCTACATGCTTTC s canFam1.chr16 22895212 52 + 60307850 GACACACAGGGAAAGTTCACAGCCTCCCTGAGTAAAGTATTCTCAGGTCTCC a score=302.0 s hg17.chr7_random 79362 2 + 778964 AA s rn3.chr10 49443682 2 - 110733352 AA s canFam1.chr16 22895264 2 + 60307850 GA a score=11195.0 s hg17.chr7_random 79364 572 + 778964 GAACCAACAGAGATTTTGTGTAATTTCTTAACTAAATTAGTCACGGGGAGATAAATTCAAACATCAGTTAAAGGCAGCTATATTAAATCATTTTTTTCTAACCTA--CCAGGCCAACCCTTC-TCATATTTGATTAGTCTCTCATAATACTGGTCTCTGTATCTCCCATCCCAGGCCCTTGCC---TCCTGGCTTGGGTAAATCTAGGAAAAGTCATCATTGTTGCACTGGGCTGGTGTGAGAATTGCTTTCCCTTGTCTGTGTGCCACAGTCCCACGCAGAAGACCCAGACGC-CCCCAGTAGCTACCAGCTAGAGTGGGGGCTCATCTGCTCATTTCCAGGGCCCCTTACATCTGGCCCCGTTCTCA-----CAGTTGCCTTTTATTAGATCCCTCTCCTGTATTTTCCCCTCCTTTGCTCTCACAGTCCCATGCACTGGAACATCCTTGCTACAGCTTTCAACTGGCCAAATTTTACCCCAAATCCTCAATGCTTGGTTGGAATCTTACCACCTTTGTGAAACCATTTCTAGTCAATATGTTCATAAATAGTGCCAACTCAATTCACCATTTATTGAAGAC s canFam1.chr16 22895266 541 + 60307850 GAATCA-CAGAATTTCCTCCCAGTTTGT-----AAATTAGTCATGGAGAGATGCCTTTAAACATTAGGTACAGGCCA---------------TCTCACTAACCTGATCCAGGCCCCCTCTTCCTGGAAGTCAAGTAGGCTCCCATAATTCCCGCCTTTGCTTCTCCC----CAGACCTTGTCCAGGTTCTGGGCACGGTAAGCCTACAGAGAGGAATCACAGCTGCCCTGTGCCAGGCTGAGAATCGGTCTGTCTTGTCAGCATGTCCTGCTCTTGCTGGAAAACCCCTCATGCTCCCCAACAAATACAGGATTGAGCTGGGGCTC-TGTGCCCATTTTCTAAGGCCCTGACTGCAGGCTCCGTTCTAAGTTTCCATCAGTTTTTCATTGTGTGTCTTCTCCTTAGTTTCCTTCCTTTTGCTGTCACCGGCCT----------------TTGAGACGGCATCCAG-TGGCCACTTCCCATCTCAAGTCCTCAGTGCTCAGGCGCAACCCTAACGCTCCCATGAAGCCACTTCCCTGCCCCATAGCTTTTAGGGGAATCAACTCAATTCATCACTTCGGGGAGAC a score=63683.0 s hg17.chr7_random 79936 456 + 778964 CTACTCCGTGTTTGGCAGA-TGCTGTGACTTGGGAGTAAAAAAATGAACAATGCCAGCAATTAAAAGTTTACATTATGTTG-GAGCAATAAGTTATAAAACAAAGGTATTTACAAAATATGCTCAGAGAAGGG--GAGGAAGT----CCCTCAGTGTGGGACAGTTGGCAGGCAGAGTGTGCTGGTGTGATCGGGCTCGGGGA--CTCTGCTCCAGCAGCATAAGGTGACCCAGGGCCTGAAGCT--GTGGCTCTGGG------CAGGGGCTGCCATGGGACTCACAGCCCACCCCAACTTGCCAGGGCCTTCT---GTGAACCTCCACATTGCTGTGAACTTATTACTTGCTGATTTAATTCCTGGTTACTCTTTGCTCACTCTCTTACACATTCTTCCAGAAAGAGATTTGCTATATGTCTCTCTTAGCCCCAGCATAGTGATACTTCCCATAAGATAAGTTTTTAATAAGTACC s panTro1.chr6 161438061 461 + 161576975 CTACTCCATGTTTGGCAGAATGCTGTGACTTGGGTGTAAAAAAATGAACAATGCCAGCAATTAAAAGTTTACATTATGTTG-GAGCAATAAGTTATAAAACAAAGGTATTTACAAAATATGCTCAGAGAAGGG--GAGGGAGTAAGCCCCTCAGTGTGGGACAGTTGGCAGGCAGAGTGTGCTGGTGTGATCGGGCTCGGGGA--CTCTGCTCCAGCAGCATAAGGTGACCCAGGGCCTGAAGCT--GTGGCTCTGGG------CAGGGGCTGCCATGGGACTCACAGCCCACCCCAACTTGCCAGGGCCTTCT---CTGAACCTCCACATTGCTGTGAACTTATTACTTGCTGATTTAATTCCTGGTTACTCTTTGCTCACTCTCTTACACATTCTTCCAGAAAGAGATTTGCTATATGTCTCTCTTAGCCTCAGCATAGTGATACTTCCCATAAAATAAGTTTTTAATAAGTACC s canFam1.chr16 22895807 441 + 60307850 CTACTGTGTGTGTGGTAGC-TGCTGTGGCTCATTAGTAAAAAGATGGATGATCCCGCCAAGCAAAAGTTAACTCTGCAGTGTAAGTGGTAAGTTATATAGCAAAGGTAAATGCAGCATGTG----GAGCAGGGCTGAGGTAACAAATCCCTCAGCTGGGGGCAGTGGACAGGCAGAGC------------CGGAGCTCTGGGATCCCCTGCACATCCAGGGCATGG-GACAAAGGGGCTGAAGCCAGGTGGTTCTGCGAGAACCCGTGAGCAGTC------CTCACAGCCCATCC--AATGTCCAGGGCCTCCTAGGCTGCTCCTTCACATGGTTACAAACAAGTTGCTTTTTTCTTTCAATACTAATTA-------ACCACTCTCTTATAAACTCTTCTGGGAAGAAACTTGCTATATA---CTCTTTGCCCTGGCACAGCAAACATGATGATAAAATAGATTTTTACTAAAAACT a score=5831.0 s hg17.chr7_random 80392 24 + 778964 TGTTAGTTGATTGTCTTTTTAATT s panTro1.chr6 161438522 24 + 161576975 TGTTAGTTGATTGTCTTTTTAATT s canFam1.chr16 22896445 24 + 60307850 TGTTAGTTGATTTTCTTATTAATT a score=179317.0 s hg17.chr7_random 80416 1147 + 778964 TACTTTTAAAGTAAGCTTAGGGAGGA---CAAAATTATGGTGTATATTTGCAAAAGAAA-------------TATCTCTAAGGAGATATAAGATTAATTGGAAGGAAATAAATTTTTTAAATCAAATGTCAGTCCTGAAGAATAACAAATGACACATGAAAGTGATTTTAAGCTGTAGGACTGCCCTGCGGAAGCCAAGCAGACAGGCAGGTGCTGTTTTCCCACTACTACCTCTCACTCACCCCGACCACAGCCCTTGAAAGCTGGATAACTATATTGGTTTAATTGTTTTTCC-TGCAATGAGGCTAGAA-TGACATAAGCCTCAAAGAAAGAACCCCACAATTGTAGTGCTGAGCAGGACCTCCCTAATGCTAACTACCAGCAGGAGGACCT--GAAAGGAGAAGCAATGGCTTCAGATGGGTGGAGGCAGATACTGGTGGGGCCTGGGATGGAAGACCCTACCT-TGGGAAGATTTGTGGGAATTCCC------CGGAAGCCAGTGGAGTTAACTGGCCAAAGAGAGCCACAGGGTGGGCTGGTTGTATTAAGCCAAACTACACATGGAATTTGAATTTACAGGGTGCAGATTAAAAATTGGCCCAACATGGAATTTTTATCAGTCTGTGTGAGGGAAGTGTCTCTGTGGGTATCACACGGTGATGTGAATATAACTCACAAGGGTGTGTGCAGCTTGACACTAGATCCATGAAGGAGCCAACATCCCATAGGCAA--CCCAAATTGCTATCTTTTCCTAAAATGCCTCTTTTCAACCCAAAGATTCGGTTGGCCTTGAGACACTTTTCTTAAACCAGACGAGAAGTCAAGTGCAGAGATGGCTCCGCCTTGCAGTATGTTTTGTCTGCTCTGCATTCAATGTCTTGATAAGGAGCCAAGTGCAAAGATGGTTCACCTTTACGGTATGTTTTCTCTCCTCTGCACTCAATGTCTTTGCTTCAAAGGAAGCTGAGTGTAATTATTAGTAATTTAGGCATTAATACTC-TTTTCAGATATTTAAAAGATGTGATTCCCCATGGACTCTATAGGCCTTTGCCA-TTAGACCTGGATAAAGATCCGAGTTTGCTCAGAAGTGGTGATTGCCAAAAA---CAGAATTATTTTCGTTTCCTGAGCCCACATGTATTTGAGGATAGTTTCAATTTGAAGTTACT s panTro1.chr6 161438546 1151 + 161576975 TACTTTTAAAGTAAGCTTAGGGAGGA---CAAAATTATGGTGTAGATTTGCAAAAAAAAATAA---------TATCTCTAAGGAGATATAAGATTAATTGGAAGGAAATAAATTTTTTAAATCAAATGTCAGTCCTGAAGAATAACAAATGACACATGAAAGTGATTTTAAGCTGTAGGACTGCCCTGCGGAAGCCAAGCAGACAGGCAGGTGCTGTTTTCCCACTACTACCTCTCACTCACCCCGACCACAGCCCTTGAAGGCTCGATAACTATATTGGTTTAATTGTTTTTCC-TGCAATGAGGCTAGAA-TGACATAAGCCTCAAAGAAAGAACCCCACAATTGTAGTGCTGAGCAGGACCTCCCTAATGCTAACTACTAGCAGGAGGACCT--GAAAGGAGAAGGAATGGCTTCAGATGGGTGGAGGCAGATACTGGTGGGGCCTGGGATGGAAGACCCTACCT-TGGGAAGATTTGTGGGAATTCCC------CGGAAGCCAGTGGAGTTAACTGGCCAAAGAGAGCCACAGAGTGGGCTGGTTGTATTAAGCCAAACTACACGTGGAATTTGAATTTATAGGGTGCAGATTAAAAATTGGCCCAACATGGAATTTTTATCAGTCTGTGTGAGGGAAGTGTCTCTGTGGGTGTCACACGGTGATGTGAATATAACTCACAAGGGTGTGTGCAGCTTGACGCTAGATCCGTGAAGGAGCCAACGTCCCATAGGCAA--CCCAAATTGCTATCTTTTCCTAAGATGCCTCTTTTCAACCCAAAGATTCGGTTGGCCTTGAGACACTTTTCTTAAACCAGATGAGAAGGCAAGTGCAGAGATGGCTCCGCCTTGCAGTATGTTTTCTCTGCTCTGCATTCAATGTCTTGATAAGGAGCCAAGTGCAAAGATGGTTCACCCTTACGGTATGTTTTCTCTCCTCTGCACTCAATGTCTTTGCTTCAAAGGAAGCTGAGTGTAATTATTAGTAATTTAGGCATTAATACTC-TTTTCTGGTATTTAAAAGATGTGATTCCCCATGGACTCTATAGTCCTTTGCCA-TTAGACCTGGATAAAGATCCTAGTTTGCTCAGAAGTGGTGATTGCCAAAAA---CAGAATTATTTTCGTTTCCTGAGCCCACATGTATTTGAGGATAGTTTCAATTTGAAGTTACT s canFam1.chr16 22896701 1073 + 60307850 TACTTTTTAAATAAGTTTAGGGAGAAGGTCAAATTTATGGTATATATTTGCAAAAAAAAAAAAAAAAAATCCTATCTTTGAGGAGATAGAAAATTGATTGAAGGGAAATAAAACAATTTCCTCAAGTGTCAGTCCTGAGGAATAATGA-------ATAAATATAGTTTTAAACTATAGAACTGCCTTGCAGATGCCTGATAGGGGGGTAAGTGCTGCAGCCCC---ACTACCTGTACCTCAGACCACCCACA-CCCTTGAGAACTGGGTAACCACACTGGTTCCTTCTCATTTCCTTATAATGAAGCTGGAATTTATGTGAGCCCCAAC-AAAGAATCCTA-AAGCCTAGCACTGAGAAAGAGCTGCCTAACTTCAAGGGTCAGAAAAAAAGTCTCAGAAAGGAGGATCAGTGATTCCAGATGG-----------TAGAGCTGGGCACCTAGATGAGAAATCATGGCTGTGGGAAGGTTTGTGGGAACTCTCTTTTCATGGGAACCAGT-GAGCTGATTGGGCAAAGAAAGCCATGTGGTAA--TGGTAGTGACAAG------TACTCATGGAGGGTGAATTTACAGGGTGCAGATTAGAAATT-GCCCACCATGGAATTTTTGTCAGTTTGTGTGAGGCAAGTCTTCCAGTGGACATCACTTGATGATGTAATTATACCCCTCGA-GACATGTGCAGCTTGGGGCCCAGGCCCAGTAGGAGCTCATGTCCCACATGCACATTATAAACTGATACTTTGTCCTGAAACTTCTTTTCT---CTCAAAGATTAGGTTGACCTTAAGACA-TTTTCTTGAGCCAGATAA-------------------------------------------------------------------AGGAAAGCAAGTATAAAGATGATTTGAACTTACAGTATATTTTTTCT-TTCTGCAGTAAGTACCTTTGCTTTAAAGGAATCTGAGTTTAATCATTGTTAAGTAAGGAATTAATACTCTTTTTCAGACTTTTAAAATATATGATTCCTTGTGAATTCAATAGTCCTATGCCAGGTAAGCCTAGGTACAAAT-TGAGTTTACTCATGAGTAATGATTGTAGAAGAGCTTGAAAGTATTTTTTATTACTAAGCCTACATACCTCTGAGAATAGGCTCACTTTGAAGTTACT a score=100.0 s hg17.chr7_random 81563 1 + 778964 C s panTro1.chr6 161439697 1 + 161576975 C a score=9662.0 s hg17.chr7_random 81564 51 + 778964 TAGGCCCAAAAAAGCAA------------TTAAGAGAGAGTTTCTACCCTTGAATTGGCCAAG s panTro1.chr6 161439698 51 + 161576975 TAGGCCCAAAAAAGCAA------------TTAAGAGAGAGTTTCTACCCTTGAATTGGCCAAG s canFam1.chr16 22898244 63 + 60307850 TAGATTCAAAAAAGCAGTTACCTGGCTTCTTAGGAGGTCATTTCAACCCTTGAATTAGCCAAG a score=5382.0 s hg17.chr7_random 81615 59 + 778964 TGCTATATCTCTTTTAAGAATAAAAATGGAAAGCTATTATTTCTACTTCTCAGCTAATT s panTro1.chr6 161439749 59 + 161576975 TGCTATATCTCTTTTAAGAACAAAAATGGAAAGCTATTATTTCTACTTCTCAGCTAATT a score=66951.0 s hg17.chr7_random 81674 457 + 778964 TTAAAAGTGAGGAGATAC-TGTTTTTGCAGAACGTATTTTCCATAGA---------GAGTTTAATGTCCACGGGGAGAAAGGACTCAAATGGAACATGATGGGATCTGCAGGCGTGGCACTGGCCATTTGAAC-TTGGAAGTGAGGAGCATAAAGCAAGCATGGGTGATGAAATGCAGACTGAGTGTGCAGAACTCTGCACTTTCCAAGGGGTCCTTTCTCATCCACAAGTCCAGCTGTACCAGTGGAGTGATAGGTAGGGGGTGTTTCCCAGGAGGGAGCTGTAAAAGCTGGGCGTGGAGCCTGCCTGCTATAAAGGTAAGGAAGATGGGACTATTCAAAACCCAGCTGTCCATGAAGTAAGAT-----ACTCACAGTG--ATCAGGCCTGTGTTACCCTCCATGCCTCAAG--CTGGCAT----TGTTGTTTGTACAA-AACTGTCCTAGGCCAC-AATTTGTAAAGGGAAAAGCAAGCTG s panTro1.chr6 161439808 457 + 161576975 TTAAAAGTGAGGAGATAC-TGTTTTTGCAGAACGTATTTTCCATAGA---------GAGTTTAATGTCCATGGGGAGAAAAGACTAAAATGGAACATGATGGGATCTGCAGGCGTGGCACTGGCCATTTGAAC-TTGGAAGTGAGGAGCATAAAGCAAGCATGGGTGATGAAATGCAGACTGAGCGTGCAGAACTCTGCACTTTCCAAGCGGTCCTTTCTCATCCACAAGTCCAGCTGTACCAATGGAGTGATAGGTAGGGGGTGTTTCCCAGGAGGGAGCTGTAAAAGCTGGGCGTGGAGCCTGCCTGCTATAAAGGTAAGGAAGATGGGACTATTCAAAACCCAGCTGTCCATGAAGTAAGAT-----ACTCACAGTG--ATCAGGCCTGTGTTACCCTCCATGCCTCAAG--CTGGCAT----TGTTGTTTGTACAA-AACTGTCCTAGGCCAC-AATTTGTAAAGGGAAAAGCAAGCTG s canFam1.chr16 22898832 439 + 60307850 TTAAAAATGAGGAGGTACATTTTTTTGCAGAACATACTTCCTACAGAGAGTTAAACGAGTTTAATGTCCATGTAGACAAAAGACCTGAACATAACATTATAGGGTCTCCAGATGTTGCACTGGTCAATTGCTCTTTGAAAGTGAGGAGTGTGAAGTAAGT----GTGATAATATGCAGACTGCATTCTCAAGACT-----------------------------CATAAG-CCAGGTCTTTGTGAGGGTCAGTAGGGACGGGGCAGTAGTTAGGAGGGCACTTGGAAAGGTGGG---------TGCCTGTTGTACAAGTAATGACAAGAGGACTGTTT-AACTCCAGCTGGTAATGAAGGGAAGTGTGCGGCTCATGGTGATATCAGGCCTGTGTTGCTCCTTGAGCTCTAAGAACTGGGTTGGGCTGTTGCTTTTGGAACAGCTGTGCTAGGTCACTCACTTCTAGGGAGAAAAGCAAGCTG a score=5457.0 s hg17.chr7_random 82131 57 + 778964 GCTTTAGTCATGGGCAGTCATGGACCCTTGGCCTATCCCTAATCCACCCCTCTTTTG s panTro1.chr6 161440265 57 + 161576975 GCTTTAGTCATGGGCAGTCATGGACCCTTGGCCTATCCCTAATCCACCCCTCTTTTG a score=202485.0 s hg17.chr7_random 82188 1351 + 778964 AGCAGATAAGGAAACAAAAGTGCAGAGTTATCTATATC-----CTCTCTTCAAGAGGGGATAATGTCAAGACCCCAACTGAGACCAATGGTTTTAAATCTT-TGAAAAGTTTCATGGTCCGTGCCTCTTCTTTTTGGAATTTCTCTGCCAGGCATCCAATGTTCCCAGTGGTTCACACCACCTGGAAACCTGAAAACTGTTCTGGAGGGACACGGCCT--GCTGACCTGTGAGCCGTGAGGCAGCCACACGCCC--AACACCCACT-GCTGGAAATGGGAAAAGCAGAGGGACTCAGGGGCCCTCTGTGG-------GAGACCATGCCTCAGAGCAGTGGGTGTCACAGCTGCCTCAGCTACTGACATTATGGAACAAAAGTTTCTGTCTATGATTCTACCTTAAGGGCAAAAATAATCTCCTGGCAAGTCCTCAAAAAGGTACATTTCCCTGGAATACCTCAGACTCTGGTTACAGAATAATCTTGACAATTGGAGAAACGCCACGTTCCATCATTTCAAATCTTGGCTTTCCCTTCTTATGCCCCATCTACAGCCCCAACAAGACTGACGATTTGTTCCTCAGAAGCAGAGGTTCTCAACTGATTAAAACGCATATGTGGCAACGTTGCTCTCACTAATC--------TGGGTTAGTGCCTGTGCTCTGAAGT---------------GGCTTTATTTCTGCTCCTTCTTCTCTCTGTTGCTGGTATTTCACAT-CCAGAAAATTACACTTGATAATACCTTTCATCTTTAAATTCCAATGTGGATGAACTTTAGGGTGACTTTCATCATATTCCTAGGTGGAGAATAAAGGGAATCCACAGTGAAACCACCAGGATGACAAGGATATTCACTGCACGTTACTTCTGAGGCAATTGTCCGCTCTCTGAAGCCGCCAAAGTCCTGC--AGGAAAAATAATTCAAATGATTGTTCTTTACAGTATCCTA-----AGGCCAACTGTTTTTAGTTGTCATGTTTTCCCCAAGTCAGTTCTTTGTTTTATAAATAAACATGCAGTTAGGCAGCCGTTTTGGAAGATGACTTCTCAAATAAAGTTA-TTAAAACATTCTACCAGGAGGTTTCCT-GCAAGATGCCCTGGGAGCCAGTTGT-GGTGAGC----ATGCGGGATGGGGC----ATCTCTGTCTGTAGCTGCCACGTGGCTCCC-GACTCTGCCCTGTAGCTCTTTCCTATAAGGAAGAGCAGCTGGCAACCTGGTTACATTTTGGAACTGAAGATAGCGGCTCAAGGACTTAGTCATACCTCCCAAATATAATCAGTCTGAATCAATCTCCAAGACTATAAAATATGCTTCACTAAGTG----------------------GCCAATTCTATTATTGAATTGAAAGCTCACCAACTTTAGGCTGCCAGCTATTCAGGTTTA s panTro1.chr6 161440322 1351 + 161576975 AGCAGATAAGGAAACAAAAGTGCAGAGTTATCTATATC-----TTCTCTTCAAGAGGGGATAACGTCAAGACCCCAACTGAGACCAATGGTTTTAAATCTT-TGAAAAGTTTCATGGTCCGTGCCTCTTCTTTTTGGAATTTCTCTGCCAGGCATCCAATGTTCCCAGTGGTTCACACCACCTGGAAACCTGCAAACTGTTCTGGAGGGACACGGCCT--GCTGACCTGTGAGCTGTGAGGCAGCCACACGCCC--AACACCCACT-GCTGGAAATGGGAAAAGCAGAGGGACTCAGGGGCCCTCTGTGG-------GAGACCATGCCTCAGAGCAGTGGGTGTCACAGCTGCCTCAGCTACTGACATTATGGAACAAAAGTTTCTGTCTATGATTCTACCTTAAGGGCAAAAATAATCTCCTGGCAAGTTCTCAAAAAGGTACATTTCCCTGGAATACCTCAGACTCTGGTTACAGAATAATCTTGGCAATTGGAGAAACGCCACGTTCCATCATTTCAAATCTTGGCTTTCCCTTCTTATGCCCCATCTACAGCCCCAACAAGACTGACGATTTGTTCCTCAGAAGCAGAGGTTCTCGACTAATTAAAATGCATATGTGGCAACGTCGCTCTCACTAATC--------TGGGTTAGTGCCTATGCTCTGAAGT---------------GGCTTTATTTCTGCTCCTTCTTCTCTCTGTTGCTGGTATTTCACAT-CCAGAAAATTACACTTGATAATAACTTTCATCTTTAAATTCCAATGTGGATGAACTTTATGGTGACTTTCATCATATTCCTAGGTGGAGAATAAAGGGAATCCACAGTGAAACCACCAGGATGACAAGGATATTCACTGCACGTTACTTCTGAGGCAATTGTCCGCTCTCTGAAGCCGCCAAAGTCCTGC--AGGAAAAATAATTCAAATGATTGTTCTTTACAGTATCCTA-----AGGCCAACTGTTTTTAGTTGTCATGTTTTCCCCAAGTCAGTTCTTTGTTTTATAAATAAACATGCAGTTAGGCAGCCGTTTTGGAAGATGACTTCTCAAATAAAGTTA-TTAAAACATTCTACCAGGAGGTTTCCT-GCAAGATGTCCTGGGAGCCAGTTGT-GGTGAGC----ATGTGGGATGGGGC----ATCTCTGTCTGTAGCTGCCACGCAGCTCCC-GACTCTGCCCTGTAGCTCTTTCCTATAAGGAAGAGCAGCTGGCAACCTGGTTACATTTTGGAACTGAAGATAGCGGCTCAAGGACTTAGTCATACCTCCCAAATATAATCAGTCTGAATCAATCTCCAAGACTATAAAATATGCTTCACTAAGTG----------------------GCCAATTCTATTATTGAATTGAAAGCTCACCAACTTTAGGCTGCCAGCTATTCAGGTTTA s canFam1.chr16 22900086 1321 + 60307850 AGTAGATGAGGACATGAGAGTCCACACATTTTTATATTCTATACTCTATTTAAT---------CCTTATAACAATAATAGAAATCAATACTTTTAAACCTTAGGAAAAAATTCATGGACCATG---CTTATTTTTGAGGTCACTCTGCCAGATATCTGATATTCTTGCTGA-TAACCTCATCTGGCAACCTGCCAGTTGCCTTAGAGGGACCTTGAGTGAGTTGTCCTCTGAGCCCTCAGGTGGCCCCAGGACCTGGATACTGGCTGGCTGGAAA----AGCACCAGGAGG----AGGGACCCCCTGAGGTAAGCACAAGGCTCCTCCTC-GTGGGTTGGGAGTCA---GTTTCTCTGTGACTGACACTG-GGAAATGAAGCCTCTGTTTCTGATCCCACCTCAAGGG-GGAAATATTCTCCCAG-AAGTCTTCAGAGAGATACTTTTCCC-ATAAGAACTCACATTCTGGTTACCAAATCATC-TGACAATTGCAGAAATTTTGTGTTCTGTCCTTTTGAATCTTTTCTTTCTCCTCTT-TTCCACCTCCATAACACTAACAGCACTGACCGTTACTTCCACAACAGCAAAGGCTGTTGACC---------------------ACGTGGTTTTTATTAGTTTCCACCAGTGGGCAGATGTCTGTGCCCTGAAATGCTTCGTGAGTAAAGGGGTTTACTTCTGTTTCTTCTTCACCCTGTTGCCTGCATTCTATATATCAGAAAATTAA--------------TTTCCCCCTAAATTCCAATGTTGATGAAC-------TGAGTCACATCATATTCTTAGGTGGAGAGTAAAATGAAACCACCACAAAATACCCAGGATGACAAGGAGATTCATAAAACGTCAGTTCTCATGCAATTTTATGCTCTCTGAAATATCTAAACTCCTGCTAAGTAACAATTCCTCATGTAGTGGTTCTTTATTGTGTCCCACAGCTAAACTAACCGTATTTAGATTTTGTGCTTTCCCCAAATCAATTCTTTGTTTTGTAAATACACAGGTAGCTAGGAAGCTGTTGTGGAGGGTGACCTCTCAAACAACGTTATTTAAAAACCTCTGTCAGGAGGTTTTGTCTCAGGAAATCTTAGGAGCTGTCTGCAGACAAGCACCGACGTGGAGGGTGACTTCTATCTTTGCTCACTGCTGCCAAGCAGCTCCCTGACTCTACCCTCTAGTTTGCTCCCTT------------CTGGT-------TTGCATCTTGGA---------------------ACTTACTCATACCACCTAAATATAATGAGTGTGAATCAACCTGGCAGTTCACAAGATATGCCTCACTAAATGCATTCACTAAGTGCTTCTCTAAGCCAGTTCTATTATTGAATTGAAAGCTCACAAACATTTGGATCTCAGCCACTCACATTTA a score=49412.0 s hg17.chr7_random 83539 267 + 778964 AGATACAGAATACTAACATAAA--TACAAATTCACACATTCAAAGAACCTACCAGATAAGCATAAGAAAATG-----TGAAAGTCTACTAACAGGGTGAAGGCTTCCTGGATCAAATGGACTTGGGTCTTGATAAGACT-AGATGTCATTTGAATAAAGAAGCTTCCATTTTGGGGATGCCTATAGATTGCTGGCTTCTGCATGGTTGGCAGAGGGGCTGGAGCTGGATGCACTACAGAGGATTGCATTTCCGTTATCAAGAGATGCAGTGCCCA s panTro1.chr6 161441673 267 + 161576975 AGATACAGAATACTAACATAAA--TACAAATTCACACATTCAAAGAACCTACCAGATAAGCATAAGAAAATG-----TGAAAGTCTACTAACAGGGTGAAGGCTTCCTGGATCAAATGGACTTGGGTCTTGATAAGACT-AGATGTCATTTGAATAAAGAAGCTTCCATTTTGGGGATGCCTATAGATTGCTGGCTTCTGCATGGGTGGCAGAGGGGCTGGAGCTGGATGCACTACAGAGGATTGCATTTCCGTTATCAAGAGATGCAGTGCCCG s canFam1.chr16 22901648 261 + 60307850 AGATGCAAATTATTAAAATAAACTTAAAAAATCACACTTTCAAAGAACCTACCAGATGAGCATAGGAAAAAAAAAATTGAAAGTCGATTAAAAAGACAAAGGCTTCCTAGAT-AAATGACATTGTGTTCTGATGAGTCTGGGGTATCATTTGAATAAAGAAGCT------------ATAATGATGGAATGCTGGCTTCT-TGTGGATGACAGAGGGACTAAAGTTGGATGCATCACAGAGGATTACATTTCCATTATCAAAAGACGCtgttctgg a score=10850.0 s hg17.chr7_random 83806 119 + 778964 TTATCAGTATATTATTGAGATGCAGTGCCCATTATCAGTATATTATCAAGAGATGCAGTGCCCGTTATCAGTATATTATCAAGAGGTGCAGTGCCCGTTATCAGTATATTATCAAGAGA s panTro1.chr6 161441940 119 + 161576975 TTATCAGTATATTATCGAGATGCAGTGCCCATTATCAGTATATTATCAAGAGGTGCAGTGCCCGTTATCAGTATATTATCAAGAGGTGCAGTGCCCGTCATCAGTATATTATCAAGAGA a score=7331.0 s hg17.chr7_random 83925 77 + 778964 TGCAGTGCCCGTTATCAGTATATTATCAAGAGGTGCAGTGCCCGTTATCAGTATATTATCAAGAGGTGCAgtgcccc s panTro1.chr6 161442321 77 + 161576975 TGCAGTGCCCGTTATCAGTATATTATCAAGAGGTGCAGTGCCCGTTATCAGTATATTATCAAGAGGTGCAgtgcccc a score=134707.0 s hg17.chr7_random 84002 823 + 778964 ttatcagtatattgcctttatgctccaagttcacttttcttggctttgttttgcgatgctgaagtgggacagtgtaaacgtctgttttgccagctggtgacgtgaggatttgtcaatatggtgctagagggactgcaggcaccatagcaagaggaaggggcttCACATCTGACGTTCTTTCAGTGTGGCTTCCAGTGGGTGGCTGGGCAGAGGCATGGCTGTGCTCGCTTCTGACTCGCCATGGTCTGT--------GCCCCCAGCAAG-----TGTCCTCACTGCCTGGAGAAGCCACACCCTC-CCGGAGGGATCTGTATCTCAGC------CTTGTGGTGGGAGGTTCTCTTTTAAGCTAATAGTTTCTGCCTTTTTCATTCCCCTTCAGGCTTTCTATATTTGCTACTTGTATACCAATTTAGTAGTCCCTAACTACTAGAC-ATTTTAGTAGTTACGCACCTTTTACTAGGTAAGTGCTCTTTGTTTTAAAATGTCCACCTGCAGATTAAACAGCat---------ggtggagtaaggacctcaaaaatacgttcttccacgaaggcagtatgaatactggaaaaattgtaagaataaaccttttcaagactctagaaattaacc-actcttgcaacaacccaaagaaattgtattcaagaaaaat-gctgaatcttcctaagagc-tttgtggcattttaacttttcctactgcaacactcttccatcagctctgcagtagccttgaaaactggcagcca-----cacaatcatgattgctgtggaaattagcagcctcccagccactagaaggggtagcatcggtctg-agct-ccccaGCTCCTGTCCTCAGGTA s panTro1.chr6 161442398 823 + 161576975 ttatcagtatattgcctttatgctccaagttcacttttcttggctttgttttgcgatgctgaagcgggacagtgtaaacgtctgttttgccagctggtgatgtgaggatttgtcaatatggtgctagagggactgcaggcaccatagcaagaggaaggggcttCACATCTGACGTACTTTCAGTGTGGCTTCCAGGGGGTGGCTGGGCAGAGGCATGGCCGTGCTCGCTTCTGACTCGCCATGGTCTGT--------GCCCCCAGCAAG-----TGTCCTCACTGCCTGGAGAAGCCACACCCTC-CCGGAGGGATCTGTGTCTCAGC------CTTGTGGTGGGAGGTTCTCTTTTAAGCTAATAGTTTCTGCCTTTTTCATTCCCCTTCAGGCTTTCTATATTTGCTACTTGTATACCAATTTAGTAGTCCCTAACTACTAGAC-ATTTTAGTAGTTACGCACCTTTTACTAGGTAAGTGCTCTTTGTTTTAAAATGTCCACCTGCAGATTAAACAGCat---------ggtggagtaaggacctcaaaaatacgttcttccacgaaggcagtatgaatactggaaaaattgtaagaataaaccttttcaagactctagaaattaacc-actcttgcaacaacccaaagaaattgtattcaagaaaaat-gctgaatcttcctaagagc-tttgtggcattttaacttttcctgctgcaacactcttccatcagctctgcagtagccttgaaaactggcagcca-----cacaatcatgattgctgtggcaattagcagcctcccagccactagagggggtagcatcggtctg-agct-ccccaGCTCCTGTCCTCAGGTA s canFam1.chr16 22901909 798 + 60307850 ttatcaatatattgcttttctgatccaaattcacttttcttggcctagctttgtgatatgaaaactggaca--ctagacatttcttttgccatctggcaatgttaggatttgttaACGGCAAGCT------ACTGC-----------------------------TATCTG--------------------CCAGTGGACTAGTGTGGGAAAGTGTGACAGTGATCACCTTAGGGATGCTGTATTCAGTCAGCGCCACCCTCCAGCAAGGGTAATGTGCTCA--ACCTG--GCAGCCGCAGCCTCTCCCTGGAGACCTGAGTCTCAGCTTGCTGCTTGTGGTGGG-GGTGCTCATCTAAGTTGATAGTTTCTTTGTTTTGTATT---CTTCAGGCCTTTTACATTTGCTACTTCTCTACCAATTTCGTGGTCTCCAACTACTATACTTTTTTAGTTGTTAATCACCTTTTACTAGATAAATACACATTATTTTAAAACTTCCATGTGCAGATTAAATAGCATTCCCagaacggtggagtaaggatctggaaaatctgttcttctataaaagcagagagaacactgccaaaatcatcaaaatattttttttcagtattatagaatttaaccaaatcttgcagtatcccagggagtttttattcaagaaaaatggctgaatcttggtaagatcttttgtggcattttaacttctcctattccaacccttctctgccagttctgcagtggcattgataaccaacagctgataaccacagtcatggtggctgtgagaagtagcagactagtagccactggatggggtaggacgggtttgaagctgcccaaagccccatgcctagata a score=71277.0 s hg17.chr7_random 84825 759 + 778964 CTCTGGGATTGGACATGGGATAtgtaaactaaaaagtgtctgaggcagatgtcagtagttttgaaggtttattttgccaaagttggggaaatgcctgggaaaaaggaaaacaagttacagtaggatctgtggcctgtgctttttccaaagagagttttgaggacttcagtatttatgggtgaaagagtggttgggagggaaaggaattaagaagaaaagagcaggagttaggttgtgaggcaagcagttgcattcttgtgaggccctgattagtgcctgctgaatccacatttgacacgtggaaagagaggagtggggaaaaagtcaactatgcattcatctcATGgtccataggtctacattttgcataagatgaagtaagtatagtgtaaggaagaggtcaaatatgcatttacctcagggtgggtggaggaataatttctagtcttgtctttgtcccacacctgtgagacaagctgttaatttacattgtcagggtgagattcaacacaactctgttttacggttcatttatagggggaatatatattatcaaagatttgagggcctacaaggaatttccttgtgagcaatttgtgatggaggccacctggggagctatgcagccttcgatgttgcagccatctgtttgagaacaaaaggaaagcagtttccttttttacatgactcagtacccatgctcaatgttccctttggcatagtgagtttggggtcccaagattttactttcctttcaca s panTro1.chr6 161443221 759 + 161576975 CTCTGGGATTGGACATGGGATAtgtaaactaaaaagtgtctgaggcagatgtcagtagttttgaaggtttattttgccaaagttggggaaatgcctgggaaaaaggaaaacaagttacagtaggatctgtggcctgtgctttttccaaagagagttttgaggacttcagtatttatgggtgaaagagtggtcgggagggaaaggaagtaagaagaaaagagcaggagttaggttgtgaggcaagcagttgcattcttgtgaggccctgattagtgcctgctgaatccacatttgacacgtggaaagagaggagtggggaaaaagtcaactatgcattcatctcATGgtccataggtctacattttgcataagatgaagtaagtatagtgtaaggaagaggtcaaatatgcatttacctcagggtgggtggaggaataatttctagtcttgtctttgtcccacacctgtgagacaagctgttaatttacatagtcagggtgagattcaacacaactctgttttacggttcatttatagggggaatatatattatcaaagatttgagggcctacaaggaatttccttgtgagcaatttgtgatggaggccacctggggagctatgcagccttcgatgttgcagccatctgtttgagaacaaaaggaaagcagtttccttttttacatgactcagtacccacgctcaatgttccctttggcatagtgagtttggggtcccaagattttactttcctttcaca a score=122690.0 s hg17.chr7_random 85584 798 + 778964 gacatgtctggaagttccctggaaacctccactcaagggcttgtctttacttgacctgactcagagcttagtcagtgtggacagcttttcccctgtggcatttattgaaaaaaaaaaaaa---tcagtgaca------------gacagatgcctgaggcaacactagcattaggagcaaagaaacaaaaaggctgacaaga--aaaaaaaggacaatctgaggactgaagactgagatgcccagaaggggctttgaaaagttccaagctaatccccagaatagagtcctgtacaggtgcagggttgcacaggc--ctacgagagtgctgcaggggtccaagtcttttacctcgt------------gattgcctcaggcaggaagcgatgcagaagacagggatgtaaacagcctgacaggtgggtaaggaaatatcacccccac-cgaacagagccccacggcagcggcgggaagac--------tcaacacatttaaggatatctatgttcagtgattagctgacctccaaaccaact-----gagactccagtggccacttaacaacagagatcacagtctccacagaattagcccagg-aagtcacaaaacaaatagcaa---------acagacaga-----------acagcctctgtgaagaagg-gagtgttctgatttccagagttgctacattatattatttaaaatgcttagttttcaacaaaacttaagagacttccaaataaaaagaaaatttggcccaaagcag--gaaaacacagtcaatggaaactttctctgaggaa---agaaatattggatttagtggagaaaggcattaaatcagctattataaatatg s panTro1.chr6 161443980 801 + 161576975 gacatgtctggaagttccctggaaacctccactcaagggcttgtctttacttgacctgactcagagctcagtcagtgtggacagcttttcccctgtggcatttattgaaaaaaaaaaaaaaaatcagtgaca------------gacagatgcctgaggcaacactagcattaggagcaaagaaacaaaaaggctgacaaga--aaaaaaaggacaatctgaggactgaagactgagatgcccggaaggggctttgaaaagttccaagctaatccccagaatagagtcctgtacaggtgcagggttgtacaggc--ctacgagagtgctgcaggggtccaagtctcttacctcgt------------gattgcctcaggcaggaagtgatgcagaagacagggatgtcaacagcctgacaggtgggtaaggaaatatcacccccac-caaacagagccccacggcagtggcgggacgac--------tcaacacatttaaggatatcgatgttcagtgattagctgacctccaaaccaact-----gagactccagtggccacttaacaacagagatcacagtctccacagaattagccccag-aagtcacaaaacaaatagcaa---------acagacaga-----------acagcctctgtgaagaagg-gagtgttctgatttccagagttgctacattatattatttaaaatgcttagttttcaataaaacttaagagacttccaaataaaaagaaaatttggcccaaagcag--gaaaacacagtcaatggaaactttctctgaggaa---agaaatattggatttagtggagaaaggcattaaatcagctattataaatatg s canFam1.chr16 22902720 797 + 60307850 gacgtgtctggcagttctctggaaacctccactcaaggacttgtctttatttgacctgactcagagcttactacatgtaaacagtcttttccctggggcacctgatgaaaaaat---------tcagtgacaattgcttaacataaaagctgcccgaggcagcaatagctttgggggcaaa-----caagaagctgaccaaaataaaagaaggaaaatc----------------agatgttcata--gggctttgaaaagctccaacatatttctgagaatgtaa------aaagctg------tgcccaagctgccccggaaagaccaca--ggcccatagctctcactttgtgtcttccttgagggtcaccttgagcaggatatgatggatgatgcagtgttgtaaagtgcc----------------------caccaacacatacacaaagccccacaggaaaggctaggagacttaatggttcaaggcttttagggaaatctctgttcaatcattagctggccagtaagctaactgagcagagactttagtgaccacat-gcaatagagaatacagact--atagaattaattcaggaaagtcacaaaacaaagagcaacataataacattgacaaagggaaagaaccacaacccctttggagtaggagaatggtctcattcccagagctgccacattttattatttaaaatgcctagttttcaacaaaaattaggagatatcccaa-aacaggaaatcttgattcatcacagaaaaaaaaataatcaagagaaactcttcaggaggaaatcagagactttggactttgtaggcatagacattaaatcagctctta-aaacatg a score=33644.0 s hg17.chr7_random 86382 190 + 778964 cccaagaactaagg-taaacc-------aggtgtgaagaactaaagaaaagtacatgaattatgtctcatcaaatagagaatattaataaacacatagaaattgtaaaatagagccaaagaaaacttttgaaattgaaaaatagaatgatagaaat--aaaaaattcagtaTATTAGCT--------GTTGACCT----GAAGGAAGAAGCt s panTro1.chr6 161444781 190 + 161576975 cccaagaactaagg-taaacc-------aggtgtgaagaactaaagaaaagtacatgaattatgtctcatcaaatagagaatattaataaacacatataaattgtaaaatagagccaaagaaaacttttgaaattgaaaaatagaatgatagaaat--aaaaaattcagtaTATTAGCT--------GTTGACCT----GAAGGAAGAAGCt s canFam1.chr16 22903719 208 + 60307850 CCCAGGAACTAATGCTAGACCTGGTTTGAGgtctaaggaactagag---agtacaagtatgatgtttcaccaaaaagaaaatatcaataagcagatagaaattat-aaatagtactaaagagaacttcagaaactgagaaatagaatgactgaaatgaaaaaaattcagtgtagtagctaacagcagactgagctgtcagaaagaagaaaca a score=538867.0 s hg17.chr7_random 86572 5901 + 778964 gaagcaaaattaatatagagagttaacttgggccacgtttgaggacagctgcctgggacacacttccaagttgccttggggagtacttcattcagtctttgttacaagcagatttttaaagacaaaaagggggacaagtggtgggctgatacagtttttgtcaggaattcttattggtttacagaaataacattgattagtgattggctatacattgttgagctataggatgtgggttatggtgtctggcatgtggcatagttaggttaatttatatttatatgtggcaatacaagcagtttaaagagacgattacatagctcaagggttggggggagtaggacgtgactgctgtctcattttaatgcctcttcaggcctagtagtttaagagggctcccattcctcagataaaagGCATATTTCtacacatatacacacatataaatatatacacacacatatatacacataCTTTCCACACACACATTCTCATTTTCCCTCTTTGATCAAAAACCTTTCTTCTTGAAAGCATCGATGATCAAAGTCTGAGTGTCAAGATGTCCTTGTTTATGGGaagacttattcccaaatagccttgtcaacattgagaagaaagagaatacatctcggtgagggattttaagagcacccaaaagccaaattgggatggcatcacagagtggccaaaaaaaa-tcagacctcaaccaagtcattgatctatgtagctgctggcacttgttgaatcatccatagtatttgaaatactatgattttagttttcttagaag---TACACATAAGAATTATAGTGAAAaagagaatttaaacaagcctattgtacaaccatggcctttgtagtggaatctgccagaacctattatgagggataaatttctaattattacctcatttactttaaatcatgataaaggagacttaaaaatgatgcccacccagaaagaggaaggcctcctggcagtgctctttttgacatctgatgtagattaagaggagtgggccaatgttctgattctgtctgactagagcaacaaaagtaccattaaaattcctagcctgcattagcccttcatcttccatccatcgaggcataagtttgcccatgtataaggctggccgttaaatccaccacaaataaaagtataccctgtggatgcacacaagacccctttccaagttctattgttcacagaggcataaggaaaagaaagaggggtacgtttcctgatggctgaggagtctagatccatgaatttgggaaagctatccacatctagaatgtgtctactttgggggagaaacttctttggttatcttcaccataaaatcaacaatgggtgtactgttcaagagtctggaggggaccttctgagttgtaagattacagacccaaggtttgacaccccagtgctttcgctgcagtgtggatggcaagtacagtctttctctgatgtcactatttgaagacccaatctccaggctctagatcatgaggatttgattgttctccatcagtggaccgtagaaagcttccttcacctggtgaaaatatactttggcataatgcatgacagtttaactgcatttagacaagtcagagtttaggagcaaaaaatatgagatttattattaggggcacaggccttccagtgactacttcataaagggtcaacttgtgttctccactagaagcggacctgattgtcatcaatctgtaatacctttaaccaagg-caatccagttgattcagttagctttgcctgatactattgcatctgtaataccttacctaaccattttacaactcacccattgaaacaagtacttctatcattaaatatttatccaggaatgtcccatgaaggaaacacatttactagtgtgtgtagcttttcgctactgaagtatcagacttctttcatgcaaaggtttctatacaaccagtaaacatgcactgaaaatagcaattaaatggaatccctctataaatgtttaaatggcatatcaggtaccaaaatttacctaaattttttattgtcttctcaggattatggatttgacaaaccaaacatcggttataaaccattttaggaatttagaagtcaccacattaatatatacatatattttctatttagatccttttatctcttctatgacaagtcatggagtacagagcttttaataataaaacctttaaggactcaggaagaaccaggaggccacccaggttctccatgagcccatgctaaatattggatttatattgtcttaagtactaattttgttactccaatgcaaatgcatagtactgtttattacttgggttatcataggtaatttgatttggaacataaagtatattcaaattgcatatcttaacaatatcagtactgactgatttagcatgaaaatttggcaaagtattttcttggaattcaattaattattgtcctgcttgggttaatagttttataaaccagttagtttctttattagagttctgggaattcttacccagtccaaataacattactttaaagttaccagaaactggtgttcaagagtgcttatcttttccatcttttttgtgaacttccttgaagactcaacactttagggttataattgcttaaaaag--ttttcagaaaaatacatgagaattgagtaactgtggacaagacttattatggtcatggttaaaggcataattgacaataaactttggttatttctgtggcctacaataatttaacataacaaccataattataattgataacatatactaagacatcagaaatttaggaatctcatacaattctggaatgcattaacaacacatttatacaaatacaactcaaagaaagttaaacac--------cacttatttgacaatattttctgtataattttaacatataaagtaagtctaatatgtctctcttggatttccagggctctaatgttcaaaatgtaagtttgaagtcaaaaagactgaatttagaaatttgattttgaagtttgtcaaatatcaaaggtttaaaacatctgatattaaaataaggaagacttacaatacttgaccaaagtgagatcataagtcgctgtaaaataatagtcattcatttagtcaaagtgataattcaaaaaatttaaaaagccaaaacttttactctttgagagagaggagattcagttttccaaacaatcaaaagacctaataaagtcaatctctccttccccccctctttaaagtttactcaaaaggtgagtaaaaatcttttcctacatgaaaatcttgttcaaaagagaaaaccagattttaccattgcatcagtgtattattaatactaaaactaattttaataaaaccttataaacaaatcaacccaacccctgtcagtttttgaatacataagattttcataaaccttttataacctcttaaaagttt----------------------------tttcccaaactttctatatttatttagttttatctatatcatttccccttcaatttgaaacatttacataacttctaaactagataaaattattttttctcaataaacaccacattctcatgcctttctttgaatcttccttaccaaaaacacacccaattttccttgtacactttgcatacaaaaggatttctcttttatatagtagttttaattacatacattaattataatgttaatgttggtaacccttatttttaggatgttgctaattttaattgttatgtaccagacgcagatcctgggaaagagacagggctgtgaattcctggagggtctgacccctccagcatggccagtaggcacagttagggcagggaggatggggccaggcatcatggccacacttaggttcccagtcctcactatggccatttgtccagaccccagaatctaaaggctcaaaccaaagacacgaactctcagtacaaTGTGTGCAATGCATTGCAGAAGCCCCACAGCCAGACCTTAGAGCTTTagcttacagacaaatcggtatttttgcttctttaaaaatactacagaagcaacagttttatgacctcaaaacatctatcaaagacagtataaaATAAAATaaagcataacacaccagaacttatggaatgtagctaatgcagtgcttagatggaaatttataactgttaaacatctatgttaaaaatgaagaaaggtcaagtgaataagcccacatttgacattaagaaattataaaaaagaagtgcagaaaacagaataattaatataagagcaaaaataaatagagaatagaatagcaatagagaagataaatgaaaccaacagttggttctttgaaatgatcaagaaaattgacacatttttagtaagactgaagaggagaaaaagaaagaagactcaaattattaaaatcaagaatgaaataggatacattactactaactttacagaaataaaaaaggattataaagtaagactaaaatcaattgtatgccaacaaatttgataacttagatgaaatggaaaagtactttttggaaaaaaaacacaaactaccaaaagtgacttaagaagaaatagaaaaatctgcattaacctataatcagaaattgagttagtaatcaaagcatttcccacaaagaaaagtacaagcccagatggctttgctgataaattcttccaaacattcaaagaggaattaatattaatcctttacacagtcttccagaaaacagaagaggaaggaaaactttctaactctttctatgaggcagtattatcccaatactaaaaccagaaaaagacatcataagaaaactgtagaccaaAGTATATATTAAAAGCATATATTAAGTGCATTCTATGTGGCAGGTATTTGGACAAAATAGGGACTAAGACAAgccgggtgctgtggctcatgcctatggtctcagctacgtggaaggctgaagtgggaggattactcgaacctaggagttcaagaccagcctgggcaacatagtgaggccctagatctaaaacaaacaaaTGAACAAACAAAAACAAACAAAATTTTAAGGGATTAAGACAAGTAAAGTTCCTGCTTGGTCTAGTCCAAGATACAGAAAAGTGATTATGTTCTTTTCATCAAAGCATGCAGGATGCTAGTATATTTTCGTTCTCCCAGACAATGACTGATACAAATTTAAGAGCATGATGGTCACATTCGGTCAGACCAATGGTGCATCTAGCCCAGCATCTTGTCTACATCAGTTTCCCCAAAGACACACTATGGACAGTCAGATACTCTTCTTATAATAGTTTTGAAGGCTAGATTTGTTGATGAAACATTCTAGATTCCCGTACTATTCTGCTGGGAATCTGTCATTCATATGTGTATTCTAATTTTCTGAGTCTGTGTATACAGTTAACATGTGGTTTCTCTTGATGTAATTTATTTGATAGGTTAACAGTCCTCAGGTCTTTATGTCCCCTGAATTTACCTCTTTCCAACTTCAAGGCATGAGTGGACAATGAGTGGAGAAATAAAATAAAATAAAAGAGTCCACTCACCTCTTCCAACCCTCTGTCCAGGTTGCTGAGCTGTGGGGGTTTTCTCCAGAAAGCAGCTCAGGCTGGCCTCTGTCTGCAGCTGCGTCCTCGGTGTGGCTTGTCCACCTTTCTCAGTTTTCCCACCTACTCTCTACACAGcagaggttttcaaagagtggttcccagcccagtagcatcagcatcccttgggaccttgcccaagttctccaccctgacctactgaatcagaaacttgggatactttctcagccgcctgcattttaactgg-ccttccggggggtctgatcctctctccagcttgagagccactACTCCACATTGGAATAGTAATCGTTCCTGCCAA s panTro1.chr6 161444971 5934 + 161576975 gaagcaaaattaatatagagagttaacttgggccacatttgaggacagctgcctgggacacacttccaagttgccttggggagtacttcattcagtctttgttacaagcagatttttaaagacaaaaagggggacaagtggtgggctgatatagtttttgtcaggaattcttattggtttccagaaataacattgattagtgattggctatacattgttgagctataggatgtgggttatggtgtctggcatgtggcatagttaggttaatttatatttatatgtggcaatacaagcagtttaaagagacgattacatagctcaagggttgggggaagtag-acgtgactgctgtctcattttaatgcctcttcaggcctagtagtttaagagggctcccattcctcagataaaagGCATATTTCtacacatatacacacatataaatata--cacacacatataTACACATACTTTCCACACATACATTCTCATTTTCCCTCTTTGATCAAAAACCTTTCTTCTTGAAAGCATCGATGATCAAAGTCTGAGTGTCAAGATGTCCTTGTTTATGGGaagacttattcccaaagagccttgtcaacattgagaagaaagagaatacatctcggtgagggattttaagagcacccaaaagccaaattgggatggcatcacagagtggccaaaaaaaaatcagacctcaaccaagtcattgatctatgtagctgctggcacttgttgaatcatccgtagtatttgaaatactatgattttagttttcttagaagaagtACACATAAGAATTATAGTGAAAaagagaatttaaacaagcctattgtacaaccatggcctttgtagtggaatctgccagaacctattatgagggataaatttctaattattacctcatttactttaaatcatgataaaggagacttaaaaatgatgcccacccagaaagaggaaggcctcccggcagtgctctttttgacatctgatgtagattaagaggagtgggccaatgttctgattctgtctgactagagcaacaaaagtaccattaaaattcctagcctgcattagcccttcatcttccatccatcgaggcataagtttgcccatgtataaggctggccgttaaatccaccacaaataaaagtataccctgtggatgcacacaagacccctttccaagttctattgttcacagaggcataaggaaaaaaaagaggggtacgtttcctgatggctgaggagtctagatccatgaatttgggaaagctgtccacatctagaatgtgtctacttcgggggagaaacttctttggttatctttaccataaaatcaacaatgggtgtactgttcaagagtctggaggggaccttctgagttgtaagattacagacccacggtttgacaccccagtgctttcgctgcagtgtggatggcaagtacagtctttctctgatgtcattatttgaatacccaatctccaggctctagatcatgaggatttgattgttctgcatcagtggaccatagaaagcttccttcacctggtgaaaatatactttggcataatgcatgacagtttaactgcatttagacaagtcagagtttaggagcaaaaaatatgagatttattattaggggcacaggccttccagtgactacttcataaagggtcaactt-tgttctccactagaagcggacctgattgtcatcaatctgtaatacctt-aaccaagggcaatccagt-gat-cagttagctgtgcctgatactattgcatctgtaataccttacctaaccattttacaactcacccattgaaacaagtacttctatcattcaatatttatccaggaatgccccacgaaggaaacacatttactagtgtgtgtagcttttcgctactgaagtatcagacttctttcatgcaaaggtttctatacaaccagtaaacatgcactgaaaatagcaattaaatggaatccctctataaatgtttaaatggcatatcaggtaccaaaatttacctaaattttttattctcttctcaggattatggatttgacaaaccaaacatcggttataaaccattttaggaatttagaagttaccacattaatatatacatatattttctatttagatccttttatctcttctatgacaagtcatggagtacagagcttttaataataaaacctttaaggactcaggaagaaccaggaggccactcaggttc--catgagcccatgctaaatattggatttatattgtcttaagtactaattttgttactccaatgcaaatgcatagtactgtttattacttgggttatcataggtaatttgatttggaacataaagtatattcaagttgcatatcttaacaatatcagtactgactgatttagcatgaaaatttggcaaagtattttcttggaattcaattaattattgtcctgcttgggttaatagttttataaaccagttagtttctttattagagttctgggaattcttgcccagtccaaataacattactataaagttaccagaatctggtgttcaagagtgcttatcttttccatcttttttgtgaacttccttgaagactcaacactttagggttataattgcttaaaaagagttttcagaaaaatacatgagaattgagtaactgtggacaagacttattatggtcatggttaaaggcataattgacaataaactttggttatttctgtggcctacaataatttaacataataaccataattataattgataacatatactaagacatcagaaatttaggaatctcatacaattctggaatgcattaacaacacatttatacaaatataactcaaagaaagttaaacactttcttgacacttatttgacaatattttctgtataattttaatatataaagtaagtctaatatgtctctcttggatttgcagggctctaatgttcaaaatgtaagtttgaagtcaaaaagactgaatttagaaatttgattttgaagtttgtcaaatatcaaaggtttaaaacatctgatattaaaataaggaagacttacaatacttgaccaaagtgagatcataagtcgctgtaaaataatagtcattcatttagtcaaagtgataattcaaaaaatttaaaaagccaaaacttttactctttgagagagaggagattcagttttccaaacaatcaaaagacctaataaagtcaatctctccttccctccctctttaaagtttactcaaaaggtgagtaaaaatcttttcctacatgaaaatctcgttcaaaagagaaaaccagattttaccattgcatcagtgtattattaatactaaaactaattttaataaaaccttataaacaaatcaacccaacccctgtcagtttttgaatacataagattttcataaaccttttataaccttttaaaagtttatataaccttttataacctcttaaaaattttcccaaactttctatatttatttagttttatctatatcatttccccttcaatttgaaacatttacgtaacttctaaactagataaaattattttttctcaataaacaccacattctcatgcctttctttgaatcttccttaccaaaaacacacccaattttccttgtacactttgcatacaaaaggatttctcttttatatagtagttttaattacatacattaattataatgttaatgttggtaacccttatttttaggatgttgctaattttaattgttatgtaccagacgcagatcctgggaaagagacagggctatgaattcctggagggtctgacccctccagcatggccagtaggcacagttagggcagggaggatggggccaggcatcgtggccacacttaggttcccagtcctcactatggccatttgtccagaccccagaatctaaaggctcaaaccaaagacacgaactctcagtacaaTGTGTGCAACGCATTGCAGAAGCCCCACAGCCAGACCTTAGAGCTTTagcttacagacaaatcggtatttttgcttctttaaaaatactacagaagcaacagttttatgacctcaaaacatctatcaaagacagtataaaATAAAATaaagcataacacaccagaacttatggaatgtagctaatgcagtgcttagatggaaatttataactgttaaacatctatgttaaaaatgaagaaaggtcaagtgaataagcccacatttgacattaagaaattataaaaaagaagtgcagaaaacagaataattaatataagagcaaaaataaatagagaatagaatagcaatagagaagataaatgaaaccaacagttggttcttcgaaatgatcaagaaaatggacacatttttagtaagactgaagaggagaaaaagaaagaagactcaaattattaaaatcaagaatgaaataggatacattactacttactttacagaaataaaaaaggattataaagtgagactaaaatcaattgtatgccaacaaatttgataacttagatgaaatggaaaagtactttttggaaaaaa--cacaaactaccaaaagtgacttaagaagaaatagaaaaatctgcattaacctataatcagaaattgagttagtaatcaaaacgtttcccacaaagaaaagtacaagcccagatggctttgctaataaattcttccaaacattcaaagaggaattaatattaatcctttacacagtcttccagaaaacagaagaggaaggaaaactttctaactctttctatgaggcagtattatcccaatactaaaaccagaaaaagacatcataagaaaactgtagaccaaAGTATATATTAAAAGCATATATTAAGTGCATTCTATGTGGCAGGTATTTGGACGAAATAGGGACTAAGACAAgccgggtgctgtggctcatgcctatggtctcagctacgtggaaggctgaagtgggaggattactcgaacctaggagttcaagaccagcctgggcaacatagtgaggccctaaatctaaaacaaacaaaTGAACAAACAAAAACAAACAAAATTTTAAGGGATTAAGACAAGTAAAGTTCCTGCTTGGTCTAGCCCAAGATACAGAAAAGTGATTATCTTCTTTTCATCAAAGCATGCAGGATGCTAGTATATTTTCGTTCTCCCAGACAATGACTGATACAAATTTAAGAGCATGATGGTCACATTCGGTCAGACCAATGGTGCATCTAGCCCAGCATCTTGTCTACATCAGTTTCCCCAAAGACACATTATGGACAGTCAGATACTCTTCTTATAATAGTTTTGAAGGCTAGATTTGTTGATGAAACATTCTAGATTCCTGTACTATTCTGCTGGGAATCTGTCATTCATATGTGTATTCTAATTTTCTGAGTCTGTGTATACAGTTAACATGCGGTTTCTCTTGATGTAATTTATTTGATAGGTTAACAGTCCTCAGGTCTTTATGTCCCCTGAATTTACCTCTTTCCAACTTCAAGGCATGAGTGGACAATGAGTGGAGAAATAAAATAAAATAAAAGAGTCCACTCACCTCTTCCAACCCTCTGTCCAGGTTGCTGAGCTGTGGGGGTTTTCTCCAGAAAGCAGCTCAGGCTGGCCTCTGTCTGCAGCTGCGTCCTCGGTGTGGCTTGTCCACCTTTCTCAGTTTTCCCACCTACTCTCTACACAGcagaggttttcaaagagtggttcccagcccagtagcatcagcatcccttgggaccttgcccaagttctccacccgggcctactcaatcagaaacttgggatactttctcagccgcctgcattttaactggcccttccggggggtctgatcctctctccagcttgagagccactgCTCCACATTGGAATAGTAATCGTTCCTGCCAA a score=119395.0 s hg17.chr7_random 92615 1271 + 778964 AGAAATGTTCTCTTCAAACATAATTTACCAACCTAAGAGTGTCTGCTATGATGTCAAGTGCCATATAGCCTTCACTAATGGTTATTAAGAGCAAATTTAGAGAAATGAGAATGGTCTTTATTGCAATACACAGAGAAGGCAAGGGAGGCTCCATTTTGATGTCTGACACTAATAACGACACACTGTGAATTCTTGCAGCAAGCAAAACATCGTAAAACTGTCATGACCAGCCCCATTTCCTGATCTGAAGGCCATGTTTTGCATACAACTTGAGTCTTTGAGTTCACCTTCAGTCTGTGCTCTGCTCTGAGACCTGGGAAGGAGGCTGAGAGTTGGAGAACTTGAAGAACTCAAGAGTCTACCTTAGTTGACTCAGAGGTGAGCCAGGTAATCTTTACCAGCTCAGACCACACTGGTGCTGGCAGCTTTGCTCCTGAACTGAATCTTCACCTCTATCCAGTTAGCTGGGCCCCTGTCAGGAAGTCTGGTCCTCCCCAAGTCAATGGTTGACCTCTGCTACCTGTACGGAGAACTCCCAAGGCCTCGTGTCTCCAAGTCTCTGCTCCCCTGCTGGAATGCCTGATTTCAGTTACCTCTTACCTCTTCCTGGCTGAGCTTTCTCCCATCACCTGCCCATGGCACCCCTGTCCCCTCATTTCATCTCTACAGGAGCCTCCGATTCCTGTTCCTAACCCCTCACACTTAGCTGTAGTTCATTTCCAATTCCTGGTAAGTCATGGGATTACAAGAATGAGTCAGGTATAAAAATTTATGCAAGACTTGTAAAGAGTTAGGACTTGGAGTGTTCTAGAATTTGCACGTGCTTTCTTTCCTCCAGCTTCAGAAGGAGAAGATGGGATTTCTGCCTGCCTTAGGGCAACAGGGCAGGACGTTCTGAGGACAGCCAGGCAAGGGCTGGGCCGTGACTTGAGAAACGGGTGCCCTGGGAAGGGTAGAAGCCAGGAGGGAGGTGGCACCCATCCTGGAAGTGTCTGCCAGCTGTGAGGATGCTCCCACTCAATGTGTGTGTGTGACAGCTGCACAGGCATCTGCTAATGATTTGTGGTTTAATATGATTTAGGATTTTATATCTGTGTACTATACACAGTACAGAATAAGAGTTTATGTTAAGCATATGATGGATTGACTATTAGAGGGCTTTGAAGACACATAAATGCCTGCAGGAGATTCGGAGCAGGCCTGGCCCAGAGTGAGGGGCAGTTTGCCACTTTCTTTGAGGCCCCCAGGCTCCCTCTTAATTTCTTTATAAT s panTro1.chr6 161451047 1271 + 161576975 AGAAATGTTCTCTTCAAACATAATTTACCAACCTAAGAGTGTCTGCTATGATGTCAAGTGCCATATAGCCTTCACTAATGGTTATTAAGAGCAAATTTAGAGAAATGAGAATGGTCTTTATTGCAATACACAGGGAAGGCAAGGGAGGCTCCATTTTGATGTCTGACACTAATAATGACACACTGTGAATTCTTGCAGCAAGCAAAACATCGTAAAACTGTCATGACCAGCCCCATTTCCTGATCTGAAGGCCATGTTTTGCATACAACTTGAGTCTTTGAGTTCACCTTCAGTCTGTGCTTTGCTCTGAGACCTGGGAAGGAGGCTGAGAGTTGGAGAACTTGAAGAACTCAAGAGTCTACCTTAGTTGACTCAGAGGTGAGCCAGGTAATCTTTACCAGCTCAGACCTCACTGGTGCTGGCAGCTTTGCTCCTGAACTGAATCTTCACCTCTATCCAGTTAGCTGGGCCCCTGTCAGGAAGTCTGGTCCTCCCCAAGTCAATGGTTGACCTCTGCTACCTGTACCGAGAACTCCCAAGGTCTCGTGTCTCCAAGTCTCTGCTCCCCTGCTGGAATGCCTGATTTCAGTTACCTCTTACCTCTTCCTGGCTGAGCTTCCTCCCATCACCTGCCCATGGCACCCCTGTCCCCTCATTTCATCTCTACAGGAGCCTCCGATTCCTGTTCCTAACCCCTCACACTTAGCTGTAGTTCATTTCCAATTCCTGGTAAGTCATGGGATTACAAGAATGAGTCAGGTATAAAAATTTATGCAAGACTTGTAAAGAGTTAGGACTTGGAGTGTTCTAGAATTTGCACGTGCTTTCTTTCCTCCAGCTTCAGAAGGAGAAGATGGGATTTCTGCCTGCCTTAGGGCAACAGGGCAGGACGTTCTGAGGATAGCCAGGCAAGGGCTGGGCCGTGACTTGAGAAACGGGTGCCCTGGGAAGGGTAGAAGCCAGGAGGGAGGTGGCACCCATCCTGGAAGTGTCTGCCAGCTGTGAGGATGCTCCCACTCAATGTGTGTGTGTGACAGCTGCACAGGCATCTGCTAATGATTTGTGGTTTAATATGATTTAGGATTTTATATCTGTGTACTATACACAGTACAGAATAACAGTTTATGTTAAGCATATGATGGATTGACTATTAGAGGGCTTTGAAGACAGATAAATGCCTGCAGGAGATTCGGAGCAGGCCTGGCCCAGAGTGAGGGGCAGTTTGCCACTTTCTTTGAGGCCCCCAGGCTCCCTCTTAATTTCTTTATAAT a score=327082.0 s hg17.chr7_random 93886 2075 + 778964 TGGTTTAGTCACTGTGGGAGCAGACAGGAAAGGAGGTCAATTCCTTAGGTGTTTTGAGAGGACAGAGGTTAACACAGAGCTCCCTGCTCCTGATCAGCCGTGGGTAACCCGGAGGAA--GACACCCTGACGAATCCATCTGATGCTGGCCAGCAATGTAAGAGGCCCG-----GGCTCATTGTGGTTGGAGT--------------------------AGCCTTCTCCTTCTCTCCTCCAGCTTCGAGATGTCATGTTAATGCGGCTATGCTGGTCACCCTCCAAGAAG------GCCTAGAATCTCCACCTAAGGGCACTGC--AGGCCCAGGGTTTGCAATGGACCCTCCATCCCTCA---TCCTGGACTGTGACAGAGACATGCCTGCAAGTCGCTTCCC---AACCTGCCCATTTCTGACCTAACGCAAGCTGTTGAACGGCAAGGGTGGCTGCTGAGTTTTCAGAATTGTGCTAGAGGCCCTGGTAAGAGAATCT--GTGACC-CTGAGGAAGTTTTCATGGGCTCCCTGGAGAAAGGGGCACTTCTAATGATTCCTCAGGTCG--------------ACTCAGCATTGGG-----------------------------------------TGGG------------------------------TCACCAGCCTTGGAATTCAATCCCTGAATATAATTTGTTTGACTAACAAAAA---TTTCTAAAATGTGTCCAAGTGTTCCAAAAATAGAAGAATGTCAACTCAGATAAAACACCAAATAAAGAAAGTGCTCCATGTTAGCTGAACTTCATGTACTCCT-GGATTTGTATTGGATTGAGATGGATAAAGTCAATGAGATGGTTTGTTTCTGTGGAGGTGGAATTCAACATGGGTTTCGGTCTTCAGTGTTACATAAAAGCTGTGGGAGCAGAGTCCAGGAAATTGCCCTGTGCTTCCCTCTATAAGAGCACTTAACTGTTGGAATTGCATGTCTCTGTTTAGGATCAGA-TGTGAGCATTCCGGAGAAGAGGCCCTGTCTCACTCAGCTTGGCATTCCTAGGGCACCGCCTGGCACCCACTCAAACACAGTGCACG-TTGAGGTCATTAATTAAAGGATGACTAATCTATCAGGTGGCTGCTGCACTTGGGCGCTGATTAAGACTGTGCTTGAGACCTTTCTGAGTCTTCTTTTGTAGGAGTCCATTATGAGAGGAAGGCTGACATCAGGATCTGCCCACCCAAAGCCCCACACCCCTACAAAACTTCAGTCGGTTTTTGAGAAGGGCTGACTACCTCTCACCAAGCAACCCAAATTCAGGC---------------TCAAGCTGTGACAGTTAATGCTTTACAGATTATGATCTAATTTGGAAAGATGCTAATTTTAGTAAAATAAATCTACTTCTTCAGAAACTTGAGCCTTGACTTTAGAGCATATTTTGGCCTAAATCTCTGTTTTGCTAGGGCATTAGAATTTCTGGCT-------TCTGTAGTGAGT--TGGGGTGCTGAGGATGGGT-------CAGGCT-AGGAGGAGGATCCCATATCAGGGAGAAACACTTGGTTTTTGTGATAAACAAGGGACGGAGAGGCTCATTCTGACTCTGCAGTGTGGACCTCTCAGAACTGAAGCATGCAGC-CGATCCCTAGCAGATCCTAGACC-GGGGCGGGAAGTTCATAAACAACAATTACGATGGAGAGAAGCATCCTCT--------CCGCAGTGGACAGTGAACTCGCAGGGTCCCCTGGATTGCCAACCCTGCTCATCA--GCCACCACCCTTGTAGGATCTTTGCAGTG-ATTGGAGGATGGACTCGGA--TCTTCTGCTG-------------TCCTCGCTGGGCCCAGAGCACAGAAGTGGCTGACTTGGGCAAAAGGCAAGGCTGTCTTTAACATTTTTCTCCTCACTTTCAATTTCTTCAAGTGATTACTAATAATATTTATAGCCCTTCTATTTTTGCAAACTTTAT-ATTTATAAAACACAGCCATATGTGTTACACATTAATATTTTGAAAATATTAAGCTAATAG---CTTTAAAAAAATTCTTTGCCTCCATGAAGAGCATGCCCTCCAGTTGTCCTTCTGTCTTCTTGAAATCATGGAGGAGAGGGGGGCAAAT-CCACGTTGAAGAGAAAAGGCAGAGA--------AAGTGCCTCCT-GCAGGCAGGGGAAGAAAAGAGAGCCCTTTGGCCTGGAGACTGGGAGGGAGGAGAAGCGAGACATCGGAGCAAT---- s panTro1.chr6 161452318 2076 + 161576975 TGGTTTAGTCACTATGGGAGCAGACAGGAAAGGAGGTCAATTCCTCAGGTGTTTTGAGAGGACAGAGGTTAACACAGAGCTCCCTGCTCCTGATCAGCCGTGGGTAACCCGGAGGAA--GACACCCTGACGAATCCATCTGATGCTGGCCAGCACTGAAAGAGGCCCG-----GGCTCATTGTGGTTGGAGT--------------------------AGCCTTCTCCTTCTCTCCTCCAGCTTCGAGATGTCATGTTAATGCGGCTATGCTGGTCACCCTCCAAGAAG------GCCTAGAATCTCCACCTAAGGGCACTGC--AGGCCCAGGGTTTGCAATGGACCCTCCATCCCTCA---TCCTGGACTGTGACAGAGACATGCCTGCAAGTCGCTTCCC---AACCTGCCCATTTCTGACCTAACGCAGGCTGTTGAACGGCAAGGGTGGCTGCTGAGTTTTCAGAATTGTGCTAGAGGCCCTGGTAAGAGAATCT--GTGACC-CTGAGGAAGTTTTCATGGGCTCCCTGGAGAAAGGGGCACTTCTAATGATTCCTCAGGTCG--------------ACTCAGCATTGGG-----------------------------------------TGGG------------------------------TCACCAGCCTTGGAATTCAATCCCTGAATATAATTTGTTTGACTAACAAAAA---TTTCTAAAATGTGTCCAAGTGTTCCAAAAATAGAAGAATGTCAACTCAGATAAAACACCAAATAAAGAAAGTGCTCCATGTTAGCTGAACTTCATGTACTCCT-GGATTTGTATTGGATTGAGATGGATAAAGTCAATGAGATGGTTTGTTTCTGTGGAGGTGGAGTTCAACATGGGTTTCGGTCTTCAGTGTTACATAAAAGCTGTGGGAGCAGAGTCCAGGAAATTGCCCTGTGCTTCCCTCTATAAGAGCACTTAACTGTTGGAATTGCATGTCTCTGTTTAGGATCAGA-TGTGAGCATTCCGGAGAAGAGGCCCTGTCTCACTCAGCTTGGCATTCCTAGGGCACCGCCTGGCACCCACTCAAACACAGTGCACG-TTGAGGTCATTAATTAAAGGATGACTAATCTATCAGGTGGCTGCTGCACTTGGGCGCTGATTAAGACTGTGCTTGAGACCTTTCTGAGTCTTCTTTTGTAGGAGTCCATTATGAGAGGAAGGTTGACATCAGGATTTGCCCACCCAAAGCCCCATACCCCTACAAAACTTCAGTCGTTTTTTGAGAAGGGCTGACTACCTCTCACCAAGCAACCCAAATTCAGGC---------------TCAGGCTGTGACAGTTAATGCTTTACAGATTATGATCTAATTTGGAAAGATGCTAATTTTAGTAAAATAAATCTACTTCTTCAGAAACTTGAGCCTTGACTTTAGAGCATATTTTGGCCTAAATCTCTGTTTTGCTAGGGCATTAGAATTTCTGGCT-------TCTGTAGTGAGT--TGGGGTGCTGAGGATGGGT-------CAGGCT-AGGAGGAGGATCCCATATCAGGGAGAAACACTTGGTTTTTGTGATAAACAAGGGACAGAGAGGCTCATTCTGACTTTTCAGTGTGGACCTCTCAGAACTGAAGCATGCAGC-CAATCCCTAGCAGACCCTAGACCTGGGGCGGGAAGTTCATAAACAACAATTACGACGGAGAGAAGCATCCTCT--------CCGCAGTGGACAGTGAACTCGCAGGGTCCACTGGATTGCCAACCCTGCTCATCA--GCCACCACCCTTGTAGGATCTTTGCAGTG-ATTGGAGGATGGACTCGGA--TCTTCTGCTG-------------TCCTCGCTGGGCCCAGAGCACAGAAGTGGCTGACTTGGGCAAAAGGCAAGGCTGTCTTTAACATTTTTCTCCTCACTTTCAATTTCTTCAAGTAATTACTAATAATATTTATAGCCCTTCTATTTTTGCAAGCTTTAT-ATTTATAAAACACAGCCATATGTGTTACACATTAATATTTTGAAAATATTAAGCCAATAG---CTTTAAAAAAATTATTTGCCTCCGTGAAGAGCATGCCCTCCAGTTGTCCTTCTGTCTTCTTGAAATCATGGAGGAGAGGGGGGCAAAT-CCACGTTGAAGAGAAAAGGCAGAGA--------AAGTGCCTCCT-GCAGGCAGGGGAAGAAAAGAGAGCCCTTTGACCTGGAGACTGGGAGGGAGGAGAAGTGAGACATCGGAGCAAC---- s canFam1.chr16 22923587 2216 + 60307850 TGAGTTAGTCAAAAGGAATGAAAGCAGGAGTGGAGATCACTTCCTTGGG-GTTTTGAGAGG-CGGCAGTT----CAGAGTCTCCAGTTCCCTGTCAGGTACTGATCACATGGGGGAATTGATGTCCTGACCAA---ATCTGACACTAGTCAGTTTTAAAAACAGCCTGTGTGTGACCCA--GTGGCTGGAATGTAGATGACACAGCTGGTGGCATAGGGGTCTTTCCCTCCATCATTCCCGCTTGATTATGTCAT--------GGTCATGGCAGTC-CCCTCCAAGGAGAGACACACCAAGGATTT-----GAAATGTCTTGCTAAGGCCTAGGGTGTGCAAACTGATCTTCA-CCCTCAGGCTTGTGATATGTAAATGACAAAGACCTCATAATGGTTTCTCTTGAA--TGCCCATTTCCCAGCTACAGCAGGCTG-GGAACCATCAGAGTGGCTGCTGAGTTTGGAGAACTGCTCTAGAGATGGT-GTAAAAGAGTCTCAGTGACCTCCAAGGGATTTTTAACAGGCTCTGTGGAGAAAGGGGCCAGTCTAATGGTTTCTCAGGGCGGGGGAGGGGGAGGTGCTCAGAATCAGGGGTTTCTTTTGAGCTCACCTGACCCACAGCTATGCAGGGCCTGGGGCCGCACCACAGGCTTCCTCTTAGGGTTCTGCACCAGCCTTTGAATTTAGCCCCTGAGTGTGATTTGTTTGATCAACCAAAATGTTTCCAAAAATTTGCCCTA-TGTTCTAAAAATAGAGGAATGTCCACTCAGAC-AAACACCAAGTAAC-AAACTGCTGGAAGTCAAGTAAATTTCATTTAATCCTAGAATTTCTATGGGTTTGAGAT-GACAAG---AATGAGGTGCTTCATTCCTGTGCAATTTGAACCTAACATGGATTTAAGTCTTCAGTGCTGTACACGAACCATGGGAATCAAGTTCAGAAAACTGCCCTGCACCTCCTTCTATAATAATACTCTACTCCCTGAGTCACATTCCTCTGCTGAccatcagactgtgaacattccagaagagaagccctgtcttagtcatctttgcattcctagcttatggtttggcacatcctcaaagtcagcaaatgtttgAGTTCATTAATTAAAGGATTACTAAATTGTCAGGTGGGGGCCATACTCCAGAGCTAATTAAAGATGCACTTGAGATCTTTCTGAGTCTTCTTTTTTAGGAGCATATTATGTGAGGAAGG------------TCTACCCAC-----ATCCCATGCCCCTAGAAAACT---------------ATGGAGCTGACCACTTCTCACTAAGCAACTCAAATTCAACCTGGTCCTGTGTTTTTTCAGGCTGTGACACTAAATGC-TTAAAGATTGTGATCTAAATTGGAAAGATGCTAATTTTAGTGAAATAAATCTCCTTCTTCAGAAACTTGAGCTTTGGCTCTGGAAGGTATTTTGGCC-AAATCTCTGTTTTGCTCAGGCATTGGAAATTTTGGCTTCAGTGCTCTATAATAAGGCATGAGGTGCTGAGGACAAATCTTCTACCAGACTCAGCAGAATGTCCCTGTAGCAGGGAGAACTGCTTCCTTTTAGTGATGCATCAGGGATAAAGAGTCTCATTCTGACTTTTGAGTTAGGACCTCT-AAAACTTAAGCGTTCAGCGTTGTCTTTGGCAGACTCTAGAACTGAGATGGGGTGTTCATAAACAA-GATTGGAATGGAGAGAAACATCTTTTCACAAGTCCTACAGATGTTGATGGCCACACAGGCTCACTAGAAT--CTGACTCCATGTGACAATGTGGTCACTTTTA-AGAACCTCAAAAGTGCATTGGACAGCAGACTTGGGGTTCTTCCACAGAATCACCCCATCATTCTGACTGGACCCAGAGTACAGTGGTAGCTAACATAGGCAAGAGGCAAAGACATTTGCAATATTCTCCCTCT-ACTTTCAGTTTCTTCAAACGATTATTAACATTA-TTATGCTCCCTTTTATTTTGTAAGCTTTATGATTTATGAAATGCTGGCATATACATTACACATTAATATTTTGAGAATATTAAACTGGTAGTATTTTTTTTAACATTATTCAACTCCATAAAGGCCATGTCCTGTAGCTGTTATTCTGTCTTAATGAAATCATGGAAAGAAGATGGGCAAGTGTCACTTGGGGGAGAAGAAGAAGACAGTAAAGAGAAAAGCCTCCTCACATAAAGGGGAAGAAAGTAGAGTCTTTATGCCTGGAAAGTGGGAAGGCAGAGAAACAAGAAGTCAGAGAGAGTAtt a score=21688.0 s hg17.chr7_random 95961 132 + 778964 GTGTCTTGGCTTCCGCTGCTGTTTACAGCGCACACTGAAATGACAGAGCCC--AGGAAGGCTGTTGGACAGGCTAAGGATGATGCTAGATGCATAGGGATGTGTGCCCCATCCCCATTTAGAATTCTGGGAATA s panTro1.chr6 161454394 132 + 161576975 GTGTCTTGGCTTCCGCTGCTGTTTACAGCGCAGACTGAAATGACAGAGCCC--AGGGAGGCTGTTGGACAGGCTAAGGATGATGCTAGATGCATAGGGATGTGTGCCCCATCCCCATTTAGAATTCTGGGAATA s canFam1.chr16 22927514 122 + 60307850 GTATTTTGGCTTCTGCTTCCATGTACATC-CAGGTTGAAATGCTGGAGCCCTGTGGGAGGGTGTTAGACTGGATGAGGTTAAAATCAAATACATAGGGGTGTGT-----------ATTTAGGACTCTGAGAACA a score=28582.0 s hg17.chr7_random 96093 314 + 778964 ggccaggtgcagtggctcaggcctgtaattccagtgctttgggaggctgaggtgggaggatcgctcgagcccaggagttagagacccacctgggcaacatagcaagaccctgtctctaccaaaaaaaaaaaaaaaaaaaaaaaagcgcacgcctgtagtcctagctactcaggaggctgaggcaggaggatcacttgagccaggaatttgaggctgcagtaagctatgattataccatcacactccatcctgggcaacagagtgagactttgtctttaaagaaaagaaagaaaaaaaaaagaaTTCTGGGAATA s panTro1.chr6 161454526 313 + 161576975 ggccaggtgcagtggctcaggcctgtaattccagtgctttgggaggctgaggtgggaggatcgctcgagcccaggagttagagaccaacctgggcaacatagcaagaccctgtctctaacaaaaaaaaaaaaaaaaaaaaaaaagcgcacgcctgtagtcctagctactcaggaggctgaggcaggaggatcacttgagccaggaatttggggctgcagtaggctatgattataccatcatactccatcctgggcaacagagtgagactttgtctttaaagaaaagaaag-aaaaaaaaagaaTTCTGGGAATA a score=242585.0 s hg17.chr7_random 96407 1771 + 778964 TCCTTCATTTCA--------CAGCCAATGTGTGTT-ATTCTAACAGAATAAAGATAGTGATTGGG---CAAAGAGAGAAAGTCATTAGTCTTAAGTTTCCCACAGCTCCTGTGTGGCATGCTATGAAAGAAACCAGAAATATTC-CATATCCTGGGCAGGGTACAGA---TAGGAGCTGAGCTAGAATATGGTGGGCCTG-CCAAAGGCCTCCATAGAGAAGGAGCAGATTGCACAGTGGGAC-----CGATGGAAGATACGATAGAATGTTTGAGATGTCTGCGTCCCCAGCAAGAGCAGAGGTCAGGCTGAGTTGGTGAGGGAGAGCTACCAGCCCCTGATGGAGACAAAATGATCTCTACCAATAGGAGTTCCCCAAAGTGCCATGAGTGGCCCAGAAATCGAGTGACACATGAATCCGCAGAAATACGTTTCCTGGGTGATTGAGCTGTCAGGGGTCTTGTTAAGGAAGAAGTGAAGAGGGCCAGGCCTTTGAGGTAAGACGGAGCATTAAGTAACCCCAGAAACACAGAGACGATATTCCTCGGTCATGGAGGACACAGAAACACACATGGAGGCTGTGCATAGCACATTCAAGGAATATAAGTAAAAGGGAATAATGA---GAGACAACACTGGATCAGGAGATAC-AGGAGGTTTGCAGAAAGCCTTCAGTGTCAAACAAAAGCGTGTGGACTTTGTGCTATGAA-CACATTCCCCAAAGGGTGTTCTGTAAAACACTTGTTCATTGAGTTAGTAATAAGTGT-CCACCAAAAAAGAAGGGCGGACTCATAGATTTAAAATTTTGGGAAACAATGAGTTATATGCAGTGAAGCAGG-TATCTCAGCATCTTCAATTTGTTACTGTGCATTCTG-AGAATATGATGGGAGCATATAGACTTGATCAGAGGGAAAACTCAAGCAGCAGATGCTGTCACACACGTTGAGTGGCAGGATCAGAGGACAAAGACTACATTGATGACTGAAAGAATGGGAATGAAAGAGACTGACTAGAGAGTTGTTAACTAACAAGAGTTGTCAGGGTGAGGTGTCTGACCCTGGGCAAGGGGGGAAGGGATGGGAACAGCCCAAGC-TCATGATTGCCTAACCAGCA--GGACGGAAGGTCCCAGCACTGTTTCCTGAAATGGGGTATTCGGAGGGTGCGCTGCTTCGGGA-----------------TGAATTTTGGTGTTTGAATCACGACCAGACATGCAGGTGGAAACGGCCAGCAGGCAGTTACTGACTGAAGACCGAGGCTCAGGACAGAGGCTCAGGCAGAGATAGAGGTGAGGATCTGTGCACTTGG---CCAGGACCTTAGGCCAGCACTGAGTCTCCAGGTGCGCCCTCCGCTCATGGTCTTGTCCTGAGGCACCTCGCTCATGCCTGTGCTCCTCAAATGTCACTGGCTGTGCTGGGTACTTTCTATTTT-TCTCCCGTTTAAAAATGTCCAGTCCCGTATCCCAATTCCTAGGACCCAACTTTCCACAAAACCAGTGA-TTTTTC--AGCTGTGGTCCTAGGGAACATCGGCTCTCTGCCC-------------------------AGGACGAGCAGTGATTGTCCTTCCCTTGGAACGCATAGTGAGCAAGTGATTTGCATATTGCATCTCAATTTTATTTTTCTCTCACTA-TTTTTTCTTAAGCCTTTGGCGCTTGCTATTACCAGTGTGTGAGCAAGTGTGACCAGATGG-ACAGCGAAT-------GAGTGAATAAACattaatttaaattaatta-aattG----ATTATGTTCGATTTGACTG--CTTTTTAGTGGATATCTAGGCTCATGATTGTAATTTCATAATAAAACCTGTT s panTro1.chr6 161454839 1776 + 161576975 TCCTTCATTTCA--------CAGCCAATGTGTGTT-ATTCTAACAGAATAAAGATAGTGATTGGG---CAAAGAGAGAAAGTCATTAGTCTTAAGTTTCCCACAGCTCCTGTGTGGCATGCTATGAAAGAAACCAGAAATATTC-CATATCCTGGGCAGGGTACAGA---TAGGAGCTGAGCTAGAATATGGTGGGCCTG-CCAAAGGCCTCCATAGAGAAGGAGCAGATTGCACAGTGGGAC-----CGATGGAAGATACGATAGAATGTTTGAGATGTCTGCGTCCCCAGCAAGAGCAGAGGTCAGGCTGAGTTGGTGAGGAAGAGCTACCAGCCCCTGATGGAGACAAAATGATCTCTACCAATAGGAGTTCCCCAAAGTGCCATGAGTGGCCCAGAAATCGAGTGACACATGAATCCGCAGAAATACGTTTCCTGGGTGATTGAGCTGTCAGGGGTCCTGTTAAGGAAGAAGTGAAGAGGGCCAGGCCTTTGAGGTAAGACGGAGCATTAAGTAACCTCAGAAACACAGAGACGATATTCCTCGGTCATGGAGGACACAGAAACACACATGGAGGCTGTGCGTAGCACATTCAAGGAATATAAGTAAAAGGGAATAATGA---GAGACAACACTGGAGCAGGAGATAC-AGGAGGTTTGCGGAAAGCCTTCAGTGTCAAACAAAAGCGTGTGGACTTTGTGCTATGAA-CACATTCCCCAAAGGGTGTTCTGTAAAACACTTGTTCATTGAGTTAGTAATAAGTGT-CCACCAAAAAAGAAGGGCGGACTCATAGATTTAAAATTTTGGGAAACAATGAATTATATGCAGTGAAGCAGG-TATCTCAGCATCTTCAATTTGTTACTGTGCATTCTG-AGAATATGATGGGAGCATATAGACTTGATCAGAGGGAAAACTCAAGCAGCAGATGCTGTCACACACGTTGAGTGGCAGGATCAGAGGACAAAGACTACATTGATGACTGAAAGAATGGGAATGAAAGAGACTGACTAGAGAGTTGTTAACTAACAAGAGTTGTCAGGGTGAGGTGTCTGACCCTGGGCAAGGGGGGAAGGGATGGGAACAGCCCAAGC-TCATGATTGCCTGACCAGCA--GGACGGAAGGTCCCAGCACTGTTTCCTGAAATGGGGTATTCGGAGGGTGCGCTGCTTCGGGA-----------------TGAGCTTTGGTGTTTGAATCACGACCAGACATGCAGGTGGAAACGGCCAGCAGGCAGTTACTGACTGAAGACCGAGGCTCAGGACAGAGGCTCAGGCAGAGATAGAGGTGAGGATCTGTGCACTTGG---CCAGGACCTCAGGCCAGCACTGAGTCTCCAGGTGCGCCCTCCGCTCATGGCCTTGTCCTGAGGCACCTCGTTCATGCCCGTGCTCCTCAAATGTCACTGGCTGTGCTGGGTACTTTCTATTTT-TCTCCCGTTTAAAAATGTCCAGTCCCGTATCCCAATTCCTAGGACCCAACTTTCCACAAAACCAGTGATTTTTTC--AGCTGTGGTCCTAGGGAACATCGGCTCTCTGCCC-------------------------AGGACGAGCAGTGATTGTCCTTCCCTTGGAACACATAGTGAGCAAGTGATTTGCATATTGCATCTCAATTTTATTTTTCTCTCACTACTTTTTTCTT-AGCCTTTGGCGCTTGCTATTACCAGTGTGTGAGCAAGTGTGACCAGAGGG-ACAGCGAAT-------GAGTGAATAAACattaatttaaattaatta-aattgattaattatGTTTGATTTGACTG--CTTTTTAGTGGATATCTAGGCTCATGATTGTAATTTCATAATAAAACCTATT s canFam1.chr16 22927636 1610 + 60307850 TCCTCCATCTTAGAGGGTTCCAGCCAATGTAAGTGAACTCCAACAGGAAGTGGTGGGAGGGTGGGGGTAAGAGAAAGGTGGTCAATATTCTCAGGCTTCCTACAGCTCCTGTGTGGTATGCTGTGGGAAGAACCAGAAATAGTCACATGTCTTTGG--GGGCACAGATGGTAGTAGCTGAGCTGGAAGACAGTGAACTTGTTCAGGGGCCACCATTATACAGGAGAA-----------AGGACTCTATTGATAGAGGGTGTAACTGAATTTTAG--------------------------------AGGTTGCGTTGGTGAGGGAG------------------------AAACAATC-ATGCAAAT-GAAGCTCC--------ACGTGAGTAGTTGA------GAGTAACACAAGAGTCC-TAGAAGGGCA----CTGTGGGATAGA-CTGCTAAGAGTCCC-TGAAGGGAGAGCAAAATTGGGCTAAGCCTTAAAGGTGAAGTAGGG----------------------------------------------------CAGAAA-------------------------------------------------AATGATGAAATGAGATGAAATTGGTACAGCAGATAAGAGTAAGTTTGTGGTAAGTCTTTAATGTCAAACCAAGGAATTTAGCCTTCATCCTAAGAGTCGCATT------AGAGTATGGTGTAGAGTACTTGTTCACTGTATTACTAATAAGTGTGCCATCAAAAAAAAAA---------AAGAAGTTTAAAGCTGGGGACACAATGAATTACACATAGTTAAGCAAGTTATCCTGATCTCTTCAATATACTAATGTGCCTTAGGAAGAACACAACGGGAA-ACACAAGCTCCATCAGAGGGAAAGGACACAGATCAGGGG---------AGACTGCATGGGAACATCTCAGGGC-AAGGCCAGGTTGCTCACTGAA--AATGGAAA-GAAAGACACTGACTGGAAGATCATTAAC---CCAGAATTGCGGAGGCATGGGGTCTGAGCATTTGCAGGTGAAGGAAGAAAGGGAAGAGCCAAAGCTTCAAGCTTGAGGAACCAGGAATAGATGGAAGACTCTAGCATTCTTTAT--AGATAGGGCTGCTAGAGGGCTTGCTGCTTCCGGACTACAGAGGGTCAGGTTTAGACCTTGTGGTTTGACATAGAGCAGGATATCCAGGTGGAAATGTCCAGCAGACAATGAACGATTGAAGACCGAGGCTCAGGACAGA-----AGGCAAAGGCAGAGATGACCTTCTATGTA--TGGGTCCCAGGACCTCAGGCCAGCA---------TGGGTGCCTCTGCTGTCCTGGACCCTCTCCTG-GGTCCCTCATGCAAGTCTACTCTAAACACATGTTGCCAGCTGTGCTGGATCTTTTCTGTTTTCTCTCCTG--------TGACTGGTCCTG--TCTTACTTCCTAGGACCCAATTTTCCACAAAACCAGTGATTTTTTTCAAACTGTGATCCTAGGGAACACTGATGTTTTGCCCACTAGTTCTACGCATTCCATCACCAAAAATGAGCAATGCTGGTCTTTTCCTTTGAAAAAATAATAAGCAAGGAACTTG-ATAGT---TCTCAATTTTATTTTTCTTTCATCATCTTTTTCATAAACTTCTGACACCTGCTAACATTAGTGTACTAGCAAGTATTAACAGATGGCAAAATAAATGAATAAGGAGTAAATGAATATT-ATCTAAATTACTCAGAATCAATAGATTATATTTGACTTGACAGCTCTCTTTTGTGGCTGTTAGTGCTCATGATTATAATTTCAGATTAAAACCTATT a score=391.0 s hg17.chr7_random 98178 4 + 778964 ACCG s panTro1.chr6 161456615 4 + 161576975 ACCG a score=46573.0 s hg17.chr7_random 98182 271 + 778964 CAGTGGTCGGATTTTTCTGGGCCACCCGAGTGGAGCGGCCGGGTTGGGCCATAAAGAGGCCGTGGCC--GGAGGACGGAGCGGGGGCGTTCACTCCGCTGGGGCTTCTCATGCCACGTTTTTTCTCCAGGTGTGACTTGG-TCGGACGC-GGATCCCGGCAGCCAGCTGGGGCTTAGTCTTCTGTGAAAGAGTAAAGTGCCTCCTGCGGAGAGCGGGTAAACTCGCCAAGGGCCTGCGAGGCGGGAGTTCTCCCC-AGGCCAGGCGAATGGGGCGG s panTro1.chr6 161456619 271 + 161576975 CAGTGGTCGGATTCTTCTGGGCCACCCGAGTGGAGCGGCCGGGTTGGGCCATAAACAGGCCGTGGCC--GGAGGACGGAGCCGGGGCGTTCACTCCGCTGGGGCTTCTCACGCCACGTTGTTTTTCCAGGTGTGGCTCGG-TCGGACGC-GGATCCCGGCAGCCAGCTGGGGCTTAGTCTTTTGTGAAAGAGTGAAGCGCCCCCTGCGGAGAGCGGGTAAACTCGCCAAGGGCCTGCGAGGCGGGAGTTCTCCCC-AGGCCAGGCGAATGCGGCGG s canFam1.chr17 62947274 272 + 66886099 CAGTTCTCGGATTTTCCTGGCCACCCGGAGTGGAGCGGTGGGATTGGGCGATAAACAGGCTCTGGCTAGGGAGGA-GGGGTGCGGGTGTTCGTTCCGCTGGGACTTTTCACGCCCCCTTATTCCTTTAGGTGTGGCTAGGTTCAGACGCGGGGTCTTGGCAGCT-GCTTGAGCCTACTCCCAAGTAAAGGG--AAAGCAGCTCCCGCGGAGAGTGGTCGAAGTTACGGAGAGGGTGCGAGACGGGAGTTCTCCCCTATACCAGCCAAATGGTGCGG a score=33437.0 s hg17.chr7_random 98453 255 + 778964 CCCTGAGCTGGTCTAGAG-CCGGCTCCACG--CGTCTGAgggggcccgcggggcggcggggAGGTGGCCCAGACGC----GGGTTCTGTGAAGGGACTTGGGGAAGGAAGATTCCATTC-GAGCAGAGGAAA-AGCCGGATTCAAAGAGGCC-AGGCCGCTG--------AGGGG--AG-------GGGCTGCCAAGATGG-CCGTCGGTCTCCTCAGGGCCTCCTCGGCGGTCAGTTTTTCATCCTTTGATCCAGGGGTCGCTTCCTGTACCTCGTCCTCAG s panTro1.chr6 161456890 255 + 161576975 CCCTGAGCCGGGCTAGAG-CCGGCTCCACG--CGTCTGAGGGGGCCCGCGGAGCGGCGGGGAGGTGGCCCAGACGC----GGGTTCTGTGAGGGGACTTGGGGAAGGAAGATTCCAGTC-AAGCAGAGGAAA-AGCCGGATTCAAAGAGGCC-AGGCCGCTG--------AGGGG--AG-------GGGCTGCCAAGATGG-CCGTCGGTCTCCTCAGGGCCTCCTCGGCGGTCAGTTTTTCATCCTTTGATCCAGGGGTCGCTTCCTGTACCTCGTCCTCAG s canFam1.chr17 62947546 255 + 66886099 CCCTGAGCTGTTTCACTGTCCCGACCGACG--TGTCT--GGAGGCCCCGGAGGGGGCAGGGAGGCGGCCCGCAGACCGCGGGGTTCTGTGAAGAGAC----GTAGAGAAAATTCGATTCAGAGAAGAGGAAG-AGCCCTGTTGAGAGGGAACGAGGCCGCTC--------AGGGGGAGG-------GGGCTGCCAAGATGG--CGTCGGCCTCCTCTGGGCCG--TCGGCGGCTGGGGTTTCATCCTTTGATCCCGGGGTCCCTTCCTGTGCTTCGGCTTCAG s galGal2.chrUn 96981329 232 + 165033910 CCGGGAGCTGTTTGGGAT-CCGGCCGGACGATTACCT-----------------------GGTATGGCACTGCTGG----GTGTGCTCTGGGGTGGCT---GTGGGGAGCTCTGTAGGCACAGCGGTGGATGCAGTACGTGGCCCCGGGGTT-TGCCTGCTGCTGTCTGAGGGGG--AGCAGCTCTGTGCTGCTGTGTTCCACCTCTGCTTTTCTCATCCCCTCCTCAGTACTCG----------CTCTG---CAGTGAGCCCCTCATTGAGCTC----TCAA a score=948.0 s hg17.chr7_random 98708 26 + 778964 CATCTGGAATCCAGAGACCTATGGCG s panTro1.chr6 161457145 26 + 161576975 CATCTGGAATCAAGAGACCTACGGGG s galGal2.chrUn 96981561 24 + 165033910 ACTCTGGGGCCAGCGGATCCCTCT-- a score=1054.0 s hg17.chr7_random 98734 2 + 778964 TC s panTro1.chr6 161457171 2 + 161576975 TC s mm5.chr3 65503063 2 - 160575607 TT s rn3.chr2 68279803 2 - 258222147 TT s canFam1.chr17 62969516 2 + 66886099 TC s galGal2.chrUn 96981585 1 + 165033910 -T a score=4127.0 s hg17.chr7_random 98736 7 + 778964 TGAGGTG s panTro1.chr6 161457173 7 + 161576975 TGAGGTG s mm5.chr3 65503065 7 - 160575607 TTAGGGA s rn3.chr2 68279805 7 - 258222147 TTAGGGA s canFam1.chr17 62969518 7 + 66886099 CCAGGTG s galGal2.chrUn 96981586 7 + 165033910 CTACGTG s danRer1.chrNA 368713891 7 + 390413307 TAAGATG a score=9766.0 s hg17.chr7_random 98743 17 + 778964 CCTTGTGCCTCGGGCAT s panTro1.chr6 161457180 17 + 161576975 CCTTGTGCCTCGGGCAT s mm5.chr3 65503072 17 - 160575607 CCTTCCGCCTCTGTCAT s rn3.chr2 68279812 17 - 258222147 CCTTATGCCTCTCTCAT s canFam1.chr17 62969525 17 + 66886099 CCTTATGCCTCTGGCAT s galGal2.chrUn 96981593 17 + 165033910 TCCAGTGATGACGAGTT s fr1.chrUn 199761095 17 + 349519338 CCTCGTCCTCCGGCCAG s danRer1.chrNA 368713898 17 + 390413307 CCTTCATCGTCAGGCCT a score=9518.0 s hg17.chr7_random 98760 11 + 778964 ACCCATC-------AAGA s panTro1.chr5 8306179 11 + 175429504 GCCCATC-------AAGA s mm5.chr3 65503089 11 - 160575607 GCCTGTT-------AAAA s rn3.chr2 68279829 11 - 258222147 GCCTGTC-------AAGA s canFam1.chr17 62969542 11 + 66886099 GCCCATC-------AAGA s galGal2.chrUn 96981610 11 + 165033910 TATCATC-------AAGA s fr1.chrUn 199761112 11 + 349519338 CCCGGTC-------AGGG s danRer1.chrNA 368713915 17 + 390413307 -GCCGTCTCATGGGAAGA a score=37188.0 s hg17.chr7_random 98771 48 + 778964 AAATAGGCCATCGAGGTGTTGATTCCTCAGGAGAG-------------ACAACCTATAGAA s panTro1.chr5 8306190 48 + 175429504 AAACAGGCCATCGAGGTGTTGATTCCTCAGGAGAG-------------ACAACATATAAAA s rn3.chr2 68279840 48 - 258222147 AAATAGGCCATCGAAGTGTTGATTCCTCTGGAGAG-------------ACTACATACAAAA s canFam1.chr17 62969553 48 + 66886099 AAATAGGCCACCGAGGTGTTGATTCCTCAGGAGAG-------------ACAACATATAAAA s galGal2.chrUn 96981621 59 + 165033910 CAGTTCAGCACAAAGAGGCAGAGTTCTTGCAGAAGCTGCTGCCCGGCTACTACATGGTA-- s fr1.chrUn 199761128 48 + 349519338 AGATTGGCCACAGAGGTGTGGACGCGTCAGGTGAA-------------ACTACATACAAGA s danRer1.chrNA 368713932 48 + 390413307 AGATCGGACACAGAGGAGTGGATGCTTCTGGAGAG-------------ACCACGTATAAGA a score=174375.0 s hg17.chr7_random 98819 130 + 778964 AGACGACCTCATCAGCCTTGAAATG------TGCCATCCAGTTGTGCATTACTCACACTG---TGGGGAGCCTGGATCCCACACCAGAGCGTC-ATGTCCTCATGTAAGATTTCTGCGTGGTGGAG-AATATCTTCTTTCC s panTro1.chr5 8306238 127 + 175429504 AGGC---CTCAACGGCCTTGAAAGG------TGCCATCCAGTTAGGCATTACTTACACTG---TGGGGAGCCTGAGTACCAAACCAGAGCGTG-ATGTCCTCATGCAAGATTTCTACGCGGTGGAG-AGTATCTTCTTCCC s mm5.chr3 65507126 130 - 160575607 AGACAACTTCATCAGCCTTGAAAGG------TGCCATCCAGTTAGGCATCACTCACACTG---TGGGCAGCCTGAGCACCAAACCAGAGCGTG-ATGTCCTCATGCAAGACTTCTACGTGGTGGAG-AGCATCTTTTTCCC s rn3.chr2 68282748 130 - 258222147 AGACAACTTCATCAGCCTTGAAAGG------TGCCATCCAGTTAGGTATCACTCACACTG---TGGGCAGCCTTAGCACCAAACCAGAGCGGG-ACGTCCTCATGCAAGACTTCTACGTGGTGGAG-AGCATCTTCTTCCC s canFam1.chr17 62971634 130 + 66886099 AGACAACCTCATCTGCCTTGAAAGG------TGCCATCCAGTTAGGCATTACTCACACTG---TGGGAAGCCTGAGTACCAAACCAGAGCGTG-ATGTCCTCATGCAAGACTTCTATGTGGTGGAG-AGTATCTTCTTCCC s galGal2.chrUn 96981680 120 + 165033910 -AGCGA-------GGCCAGGAAGGGCTTTCTTTGCACGTAACACTGCGTGCTCCCTGCTGACCTGTGTGCCCTGAGCCTGACACGGGGTCCTGCATGTCC-------------CTGTGTGGGAGAGCAGTGAGTTCTTCTG s fr1.chrUn 199761257 130 + 349519338 AGACCACATCTTCAGCCTTGAAAGG------TGCCATCCAATTGGGTATCGGGTACACCG---TGGGCAACCTGAGCTCCAAACCAGAGAGGG-ATGTGTTGATGCAGGACTTCTACGTGGTGGAG-AGCATCTTTTTCCC s danRer1.chrUn 197742223 130 - 367113659 AGACGACCTCCTCTGCTCTGAAAAG------TGCCATCCAGCTGGGTATCGCACATACAG---TGGGCAGCCTCAGTCAAAAAGCAGAGAGAG-ATGTCCTCATGCAGGACTTTTACGTTGTAGAG-AGCATCTTCTTCCC a score=-2270.0 s hg17.chr7_random 98949 1 + 778964 -------------------------------------------------------------------------------C s fr1.chrUn 199761387 80 + 349519338 CAGGTCTGAACTGCATCCAAGTGTTGTGCGTAAAATAAAGCATTGTGTTTTATCATTGCTATAATGTTTTCCTGGGTTAC a score=300.0 s hg17.chr7_random 98949 1 + 778964 C s panTro1.chr5 8306365 1 + 175429504 C s mm5.chr3 65507256 1 - 160575607 C a score=100.0 s hg17.chr7_random 98949 1 + 778964 C s rn3.chr2 68284001 1 - 258222147 C a score=100.0 s hg17.chr7_random 98949 1 + 778964 C s canFam1.chr17 62972190 1 + 66886099 C a score=100.0 s hg17.chr7_random 98949 1 + 778964 C s galGal2.chrUn 96981800 1 + 165033910 C a score=100.0 s hg17.chr7_random 98949 1 + 778964 C s danRer1.chrUn 197743201 1 - 367113659 C a score=59370.0 s hg17.chr7_random 98950 46 + 778964 AGTGGAGGGAGCAACCTGACCCCTGCTCATCACTGCAGTGAGTTTC s panTro1.chr5 8306366 46 + 175429504 AGTGAAGGGAGCAACCTGACCCCTGCTCATCACTACAATGACTTCC s mm5.chr3 65508729 46 - 160575607 AGTGAAGGCAGCAACCTGACACCGGCTCACCATTACAATGACTTTC s rn3.chr2 68284002 46 - 258222147 AGTGAAGGCAGCAACCTGACACCGGCTCACCATTACAATGACTTTC s canFam1.chr17 62972191 46 + 66886099 AGTGAAGGGAGTAACTTGACCCCTGCTCATCACTACAATGACTTTC s galGal2.chrUn 96981801 41 + 165033910 -ACTCGTGGGCTGATCTGACC----TTCAGCTTTGCAGAGAGGTTA s fr1.chrUn 199761467 46 + 349519338 AGTGAAGGCAGCAACCTGACTCCAGCCCATCATTTCCCTGATTTCC s danRer1.chrUn 197743202 46 - 367113659 AGTGAAGGAAGTAATTTGACTCCAGCACATCACCATGGTGACTTCA a score=94581.0 s hg17.chr7_random 98996 73 + 778964 CTTTCAA-GACCTATAC--ACCTGTTGCCTTCTGCTACTTTCAGGAGCTATTTGGTATCTGCCCTGATGATGACTT s panTro1.chr6 161457421 72 + 161576975 CTTTCA--GACCTATAC--ACCTGTTGCCTTCTGCTACTTTCGGGAGCTATTTGGTATCTGCCCTGATGATGACTT s mm5.chr3 65508775 73 - 160575607 GATTCAA-GACCTATGC--GCCTGTTGCCTTCCGTTACTTCAGAGAGCTCTTTGGCATCCGGCCTGATGATTACTT s rn3.chr2 68284048 73 - 258222147 GGTTCAA-GACCTATGC--ACCTGTCGCCTTCCGTTACTTCAGAGAGCTATTTGGCATCCGGCCTGACGATTACTT s canFam1.chr17 62972237 73 + 66886099 GGTTCAA-GACCTATGC--ACCTGTTGCCTTCCGTTACTTTCGGGAGTTATTTGGTATCCGGCCTGATGATTACTT s galGal2.chrUn 96981842 67 + 165033910 ---ACAGTGGGCCGCGCCAACCTGTCCCCCCTCCCCACCCTC---ATCTCTTTTGTTTCT---TTGGCAAATGCTT s fr1.chrUn 199761513 73 + 349519338 GTTTCAA-AACCTACGC--TCCAGTGGCCTTCCGCTACTTCAGAGAGCTGTTTGGCATCAGGCCCGACGACTACCT s danRer1.chrUn 197743248 73 - 367113659 GGTTTAA-GACCTACGC--CCCCATTGCCTTCCGTTACTTCCGAGAACTCTTTGGCATTCGGCCTGACGACTATCT a score=-1720.0 s hg17.chr7_random 99069 1 + 778964 G- s panTro1.chr6 161457493 1 + 161576975 G- s mm5.chr3 65508848 1 - 160575607 G- s rn3.chr2 68284121 1 - 258222147 G- s canFam1.chr17 62972310 1 + 66886099 G- s galGal2.chrUn 96981909 2 + 165033910 TG a score=100.0 s hg17.chr7_random 99069 1 + 778964 G s fr1.chrUn 199762307 1 + 349519338 G a score=100.0 s hg17.chr7_random 99069 1 + 778964 G s danRer1.chrUn 197745411 1 - 367113659 G a score=171268.0 s hg17.chr7_random 99070 146 + 778964 TACTCCCT-CTGCAGTGAGCCACTGATTGAACTCAGTAGCTCTGGAGCTGATGGTTCCCTGTTACATGTGTCCATCCACAATGAATTCATTATTAAAACAGTCCAACATAAACAGGCGGAGTTTCTGCAGAAGCTGATTCCAGGATA s panTro1.chr6 161457494 146 + 161576975 TACTCCCT-CTGCAGTGAGCCACTGATTGAACTCAGTAGCTCTGGAGCTGATGGTTCCCTGTTATATGTGTCCATCCACGATGAATTCATTATTAAAACAGTCCAACATAAAGAGGCGGAGTTTCTGCAGAAGCTGCTTCCAGGATA s mm5.chr3 65509209 146 - 160575607 TACTCCCT-TTGCAGTGAGCCATTGATTGAACTCTCCAATTCTGGAGCTAGTGGTTCCCTCTTCTATGTGTCCAGTGATGATGAATTCATCATTAAGACCGTCCAGCATAAAGAAGCAGAATTTCTGCAGAAGTTGCTTCCAGGATA s rn3.chr2 68284558 146 - 258222147 TACTCCCT-TTGCAGTGAGCCATTGATTGAACTCTCCAATTCTGGAGCTAGCGGTTCCCTCTTCTACGTGTCCAGTGATGATGAATTCATCATTAAGACCGTCCAGCATAAAGAGGCAGAATTTCTGCAAAAATTGCTTCCAGGATA s canFam1.chr17 62972493 146 + 66886099 TACTCCCT-TTGCAATGAACCACTGATTGAACTCTGCAGCTCTGGGGCTAGTGGTTCCCTCTTCTACGTGTCCAGTGACGATGAATTCATCATCAAAACGGTCCAGCATAAAGAGGCGGAGTTTCTGCAGAAGCTGCTTCCAGGATA s galGal2.chrUn 96981911 93 + 165033910 -AATCTCTGCTGGGAGGAGCAGC------AGCTCTG-----CTGGGGCAG---------------ATGTGAATAGCCAGGATGGCTCT------------------------GAAGGCACCTCTGTGTGTTTGGTTCTCCTAGA--- s fr1.chrUn 199762308 146 + 349519338 TACTCCCT-GTGTAACGAACCTCTGATCGAGCTGTCCAACCCCGGGGCCAGCGGCTCGGTTTTCTACGTCACAAAAGACGATGAGTTCATCATCAAGACCGTGATGCATAAAGAGGCTGAATTCTTACAGAAGCTCCTGCCTGGATA s danRer1.chrUn 197745412 146 - 367113659 TACTCGCT-GTGTAACGATCCCTTGATCGAACTGTCCAATCCTGGAGCAAGCGGATCCATCTTTTACGTGACCAGCGATGATGAGTTTATTATTAAAACAGTCATGCACAAAGAGGCAGAGTTCCTGCAGAAACTACTGCCTGGGTA a score=1020.0 s hg17.chr7_random 99216 6 + 778964 CCACAT s fr1.chrUn 199762454 6 + 349519338 CTACAT s danRer1.chrUn 197745558 6 - 367113659 CTTCAT a score=9349.0 s hg17.chr7_random 99216 6 + 778964 CCACAT s panTro1.chr6 161457640 6 + 161576975 CCACAT s mm5.chr3 65509355 6 - 160575607 CTACAT s rn3.chr2 68284704 6 - 258222147 CTACAT s canFam1.chr17 62972639 6 + 66886099 CTACAT s fr1.chrUn 199762454 6 + 349519338 CTACAT s danRer1.chrUn 197745558 6 - 367113659 CTTCAT a score=-520.0 s hg17.chr7_random 99222 2 + 778964 CG- s panTro1.chr6 161457646 2 + 161576975 CG- s danRer1.chrUn 197745564 2 - 367113659 -GG a score=-360.0 s hg17.chr7_random 99222 2 + 778964 CG- s danRer1.chrUn 197745564 2 - 367113659 -GG a score=282861.0 s hg17.chr7_random 99224 206 + 778964 ACCTCAACCAGAACTCTTGGACTTTGCTGCCTAAATTCTATGGACTGTGCTGTGTGAAGGCAGGTGGCAAGAACACGCAGATTGCGGTGATGAAGAATCTCTTACTAAGACTGGTCAAAATGCATACCAAATATGACTTCAAAAGTTCAACCTACAAAGAGCAGGCTTCCCAGAAAGAGCAAGAGAAGCCTCTTCCCACATTTTCC s panTro1.chr6 161457648 206 + 161576975 ACCTCAACCAGAACTCTTGGACTTTGCTGCCTAAATTCTATGGACTGTGCTGTGTGCAGGCAGGTGGCAAGAACACGCAGATTGCGGTGATGAAGAATCTCTTACTAAGACTGGTCAAAATGCATACCAAATATGACTTCAAAAGTTCAACCTACAAAGAGCAGGCTTCCCAGAAAGAGCAAGAGAAGCCTCTTCCCACATTTTCC s mm5.chr10 81221843 200 + 130633972 ATCTCAACCAGAACCCACGGACGCTGCTGCCCAAGTTCTATGGGCTGTACTGCGTGCAGTCTGGTGGCAAGAACATCCGCGTGGTGGTCATGAACAATGTGCTGCCCCGTGTCGTCAAAATGCACCTTAAGTTCGACCTCAAGGGCTCCACGTACAAGCGCAGGGCCAGCAAGAAGGAGAAGGAGAAGAGCCTGCCCACC------ s rn3.chr2 68285780 196 - 258222147 ATCTTAACCAAAACCCTCGTACTTTGCTGCCCAAATTTTATGGACTGTACTGTGTGCAAGCAGGCGGCAAGAACATACGAATTGTGGTGATGAACAATCTCTTGCCTCGGTCAGTCAAAATGCATATGAAATATGATCTCAAGGGTTCAACTTACAAGCGGCGGGCTTCTCAGAAAGAACGAGAGAAGACTCTCCC---------- s canFam1.chr17 62973546 196 + 66886099 ACCTCAACCAGAATCCTCGCACTTTGCTACCTAAGTTCTATGGACTGTATTGTGTGCAGGCAGGTGGTAAGAACATTCGAATTGTGGTGATGAACAATCTCTTACCACGGTCGGTCAAGATGCACATCAAATATGACCTCAAGGGCTCAACCTACAAACGACGGGCTTCCCAAAAAGAGCGAGAGAAGCCTCTCCC---------- s galGal2.chrUn 96982004 196 + 165033910 ACTTGAATCAGAACCCAAGGACGCTGCTGCCCAAGTTTTATGGCTTGTACTGTGTCCAAGCCGGGGGCAAAAACATCCGCATTGTGGTGATGAACAACCTGCTGCCACGTTCTGTGAAGATGCACCTCAAATATGACCTGAAGGGCTCCACCTACAAACGCAGAGCATCCCAGAAGGAGCGGGAGAAGGTCTTCCC---------- s fr1.chrUn 199764336 196 + 349519338 ACCTCAATCAGAACCCCCGGACATTGCTGCCCAAATTTTTTGGCCTGTACTGTGTGCAGTCAGGGGGAAAGAACATCCGCATGGTGGTCATGAACAATGTCCTCCCCCGAGTCGTCCGCATGCACCTCAAATATGACCTAAAGGGCTCCACCTACAAGAGACGGGCATCCAAGAAGGAGAGAGAGAAGGCCAGGCC---------- s danRer1.chrUn 197745742 196 - 367113659 ACCTGAATCAGAACAAAAGAACGCTGCTCCCAAAGTTTTATGGCTTGTATTGCGTTCAGGCGGGTGGAAAGAACATCCGTATCGTTGTTATGAATAATCTGTTGCCTCGCAGTGTGCCTATGCACCTCAAATATGACCTGAAGGGCTCAACATACAAGCGGCGTGCCTCTCCTAAAGAGAGAGACAAGAGTGTGCC---------- a score=149027.0 s hg17.chr7_random 99430 102 + 778964 CACATTTAAAAACCTAGACTTCTTACAAGACATCCCGATGGTCTTTTTTTTGGATGCTAACATGTACAACGCTCTCTGTAAGACCCTGCAGCGTGGCTGTTT s panTro1.chr6 161457854 102 + 161576975 CACATTTAAAAACCTAGACTTCTTACAAGACATCCCGATGGTCTTTTTTTTGGATGCTGACATGTACAACGCTCTCTGTAAGACCCTGCAGTGTGGCTGTTT s mm5.chr3 65510437 102 - 160575607 CACCTTTAAAGACCTGGACTTCCTACAAGATATCCCTGACGGCCTATTTTTGGATGCTGACATGTACAGTGCTCTGTGTAAGACTCTACAGCGTGACTGTTT s rn3.chr2 68285976 102 - 258222147 CACCTTTAAAGACCTGGACTTCCTACAAGATATCCCCGATGGCCTTTTTTTAGATGCTGACATGTACAGTGCTCTATGTAAGACTCTGCAGCGTGACTGTCT s canFam1.chr17 62973742 102 + 66886099 TACCTTTAAAGACCTAGACTTCTTACAAGACATTCCAGATGGTCTTTTTTTGGATGCTGACATGTACAATGCTCTGTGTAAGACCCTACAGCGTGACTGTTT s galGal2.chrUn 96982200 102 + 165033910 CACCTACAAGGACTTGGATTTTATGCAGGACATCCCCGACGGGCTCTTCTTGGACTCAGACATGTATAACGCTCTGTGCAAAACGTTGCAGAGAGACTGTTT s fr1.chrUn 199764532 102 + 349519338 AACGTTCAAGGACCTCGACTTCATGCAAGACCTCCAGGATGGGCTCATGTTGGACCAGGACACTTACAACGCACTGGCCAAGACACTACAGAGGGACTGTCT s danRer1.chrUn 197745938 102 - 367113659 CACTTACAAAGACTTGGATTTCATTCAGGACATGCCAGAGGGCATCCAGCTGGAGCCAGACAACTACAATGCACTCTGCAAAACTATCCAGCGGGACTGCCT a score=200.0 s hg17.chr7_random 99532 2 + 778964 GG s danRer1.chrUn 197746040 2 - 367113659 GG a score=1500.0 s hg17.chr7_random 99532 1 + 778964 G s panTro1.chr6 161457956 1 + 161576975 G s mm5.chr3 65512984 1 - 160575607 G s rn3.chr2 68288729 1 - 258222147 G s canFam1.chr17 62976951 1 + 66886099 G s galGal2.chrUn 96982302 1 + 165033910 G a score=100.0 s hg17.chr7_random 99532 1 + 778964 G s fr1.chrUn 199764634 1 + 349519338 G a score=2100.0 s hg17.chr7_random 99533 1 + 778964 G s panTro1.chr6 161457957 1 + 161576975 G s mm5.chr3 65512985 1 - 160575607 G s rn3.chr2 68288730 1 - 258222147 G s canFam1.chr17 62976952 1 + 66886099 G s galGal2.chrUn 96982303 1 + 165033910 G s fr1.chrUn 199765138 1 + 349519338 G a score=56960.0 s hg17.chr7_random 99534 39 + 778964 T--GCTGCAGATCTTTGAGATAATGGACTATAGCCTCTTGA s panTro1.chr6 161457958 39 + 161576975 T--GCTGCAGATCTTTGAGATAATGGACTATAGCCTCTTGA s mm5.chr3 65512986 39 - 160575607 T--GCTGCAGAGCTTCAAGATAATGGACTACAGCCTGTTGA s rn3.chr2 68288731 39 - 258222147 T--GCTGCAGAGCTTCAAGATTATGGACTATAGCCTGTTGA s canFam1.chr17 62976953 39 + 66886099 T--GTTGCAGAGCTTCAAGATAATGGACTATAGCCTCTTGA s galGal2.chrUn 96982304 41 + 165033910 TAAGTGGGAGGGCTGGGAGCTGTGGGAGGAGTTCTTTTTGA s fr1.chrUn 199765139 39 + 349519338 T--GCTGGAAAGCTTTAAGATCATGGACTACAGTCTGCTGC s danRer1.chrUn 197747978 39 - 367113659 T--GCTGCAGAGCTTTAAGATTATGGACTACAGTCTATTGG a score=46989.0 s hg17.chr7_random 99573 34 + 778964 TGTCAATCCACAACATAGATCATGCAC---GAGAGCC s panTro1.chr6 161457997 34 + 161576975 TGTCAATCCACAACATAGATCATGCAC---GAGAGCC s mm5.chr3 65513025 37 - 160575607 TGTCCATCCACAACATGGACCATGCACAGAGGGAGCC s rn3.chr2 68288770 37 - 258222147 TGTCCATCCACAACATGGATCATGCCCAGCGAGAGCC s canFam1.chr17 62976992 37 + 66886099 TGTCAATTCATAACATAGATCACGCACAGCGAGAGCC s galGal2.chrUn 96982783 37 + 165033910 TGGCAATCCATAACATGGATCTGGCGCAGAGGGAGCA s fr1.chrUn 199765178 35 + 349519338 TGGGGGTCCACAACATGGACCAGGCAGAGAGGGAG-- s danRer1.chrUn 197748017 37 - 367113659 TGGGGGTCCATAATACAGATCTGGCATCTCGAGAGCG a score=7910.0 s hg17.chr7_random 99607 27 + 778964 CTTGAGCAGCCAAACACAATGCTCAGT s panTro1.chr6 161458031 27 + 161576975 CTTAAGCAGCCAAACACAATGCTCAGT s mm5.chr3 65513062 27 - 160575607 CACGAGCAATGACACACAGTACTCGGC s rn3.chr2 68288807 27 - 258222147 CATGAACAGCGAAACACAATACTCAAT s canFam1.chr17 62977029 27 + 66886099 CTTAGGCAATGAAGCACAGTGCTCAGC s galGal2.chrUn 96982820 27 + 165033910 CGTGATGGCAGACGGGACGTCCCAGGC s fr1.chrUn 199765213 23 + 349519338 ---AGGCAGATGGA-AGGGTCCCAGGG a score=144607.0 s hg17.chr7_random 99634 100 + 778964 TCACACTTGA-------AGA----------CCAGCCCCCCAAAGGGCTCTGTATTCCACAGCCATGGAATCCATCCAGGGAGAGGCTTGACGGGGCAGCCCCATGGAGACTGATGAC s panTro1.chr6 161458058 100 + 161576975 TCACACTTGA-------AGA----------CCAGCCCCCCAAAGGGCTCTGTATTCCACAGCCATGGAATCCATCCAGGGAGAGGCTTGACGGGGCAGCCCCATGGAGACTGATGAC s mm5.chr3 65513089 100 - 160575607 TGACACGCGC-------AGA----------CCAGCCCCACAGAAGGCGCTCTATTCCACAGCTATGGAATCCATCCAGGGCGAGGCTCGACGGGGCGGCACTGTGGAGACTGAGGAC s rn3.chr2 68288834 100 - 258222147 TGACACTCGC-------AGA----------CCAGCCCCGCAGAAGGCTCTCTATTCCACAGCTATGGAGTCCATCCAGGGCGAGGCTCGCCGGGGCGGCACTGTGGAGACTGAGGAC s canFam1.chr17 62977056 100 + 66886099 TGACACTCGC-------AAA----------CCAGCCCCCCAAAAGGCCCTCTATTCCACAGCTATGGAATCCATCCAGGGCGAGGCAAGGCGAGGCGGCACTATGGAGACTGATGAC s galGal2.chrUn 96982847 100 + 165033910 CGACACGCGG-------CGA----------CCCGCGGCGCAGAAGGCGCTGTATTCCACTGCCATGGAGTCCATCCAGGGGGAGGCCCGGAGGGGGGGCACCATAGAGACAGACGAC s fr1.chrUn 199765236 109 + 349519338 TGACA-GCGA-------TGAGAAGCGGCCCCTGGCCCAGCAGAAGGCTCTGTACTCCACAGCAATGGAGTCCATCCAGGGAGGAGCTGCCTGTGGAGGATCCATCGACACTGACGAC s danRer1.chrUn 197748092 107 - 367113659 TGACACCTGACCACAGGAGA----------CCACAGATTCAAAAAGCACTGTACAGCACTGCTATGGAGTCCATACAGGGAGAGGCCAAAGGGAAAGGAACCCTGGAAACAGAGGAC a score=4011.0 s hg17.chr7_random 99734 2 + 778964 CA s panTro1.chr6 161458158 2 + 161576975 CA s mm5.chr3 65513189 2 - 160575607 CA s rn3.chr2 68288934 2 - 258222147 CA s canFam1.chr17 62977156 2 + 66886099 CA s galGal2.chrUn 96982947 2 + 165033910 CA s danRer1.chrUn 197748199 2 - 367113659 CA a score=91.0 s hg17.chr7_random 99736 1 + 778964 T s panTro1.chr6 161458160 1 + 161576975 T a score=91.0 s hg17.chr7_random 99736 1 + 778964 T s canFam1.chr17 62977950 1 + 66886099 T a score=3822.0 s hg17.chr7_random 99737 2 + 778964 AT s panTro1.chr6 161458161 2 + 161576975 AT s mm5.chr3 65513787 2 - 160575607 AT s rn3.chr2 68289787 2 - 258222147 AT s canFam1.chr17 62977951 2 + 66886099 AT s galGal2.chrUn 96983556 2 + 165033910 AT s fr1.chrUn 199765605 2 + 349519338 AT a score=128032.0 s hg17.chr7_random 99739 78 + 778964 GGGTGGCATCCCTGCCCAGAATAGTGAGGGGGAAAGAATCCTGCTTTGTATTGGCATCACTGACATTCTACAGTCTTA s panTro1.chr6 161458163 78 + 161576975 GGGTGGCATCCCTGCCCAGAATAGTGAGGGGGAAAGAATCCTGCTTTGTATTGGCATCACTGACATTCTGCAGTCTTA s mm5.chr3 65513789 78 - 160575607 GGGTGGCATCCCTGCCCGGAATAACAAAGGAGAAAGGCTCCTGCTTTATATTGGCATCATTGATATTCTTCAGTCCTA s rn3.chr2 68289789 78 - 258222147 GGGTGGCATCCCTGCCAGAAACAACAAAGGGGAAAGGCTCCTGCTTTACATTGGCATCATTGATATTCTGCAGTCCTA s canFam1.chr17 62977953 78 + 66886099 GGGTGGCATCCCTGCCCGTAATAGTAAAGGGGAAAGGCTGCTGCTTTATATTGGGATCATTGACATTCTCCAGTCTTA s galGal2.chrUn 96983558 78 + 165033910 GGGGGGCATTCCTGCCCGCAACGCCAAGGGGGAGAGGCTGCTCCTCTATGTCGGCATCATCGATGTGCTGCAGTCCTA s fr1.chrUn 199765607 78 + 349519338 GGGTGGTATCCCAGCGGTGAACGGAAAGGGAGAGCGGCTTCTTCTTTATATCGGAATCATCGATATCTTGCAGTCCTA s danRer1.chrUn 197748399 78 - 367113659 GGGGGGAATCCCAGCACGCAACAGTAGAGGAGAGAGAATATTGGTTTATATTGGGATCATCGACATATTGCAGTCGTA a score=13496.0 s hg17.chr7_random 99817 5 + 778964 CAGGT s panTro1.chr6 161458241 5 + 161576975 CAGGT s mm5.chr3 65515388 5 - 160575607 CAGGT s rn3.chr2 68291301 5 - 258222147 CAGGT s canFam1.chr17 62978847 5 + 66886099 CAGGT s galGal2.chrUn 96984044 5 + 165033910 CAGGT s fr1.chrUn 199765685 5 + 349519338 CAGGT s danRer1.chrUn 197748477 5 - 367113659 CAGGT a score=89208.0 s hg17.chr7_random 99822 46 + 778964 TTGTTAAGAAGCTGGAGCATTCTTGGAAAGCCCTGGTATGTGATGG s panTro1.chr6 161458246 46 + 161576975 TTGTTAAGAAGCTGGAGCATTCTTGGAAAGCCCTAGTATGTGATGG s mm5.chr3 65515393 46 - 160575607 TTGTTAAGAAGTTGGAGCACTCTTGGAAAGCACTGGTCCATGATGG s rn3.chr2 68291306 46 - 258222147 TTGTTAAGAAGTTGGAGCACTCTTGGAAAGCCCTGGTCCATGATGG s canFam1.chr17 62978852 46 + 66886099 TTGTTAAGAAGTTGGAGCACTCTTGGAAAGCCCTGGTACATGATGG s galGal2.chrUn 96984049 46 + 165033910 TTGTGAAGAAGCTGGAGCACTCGTGGAAGGCCCTTGTGCATGATGG s fr1.chrUn 199765809 46 + 349519338 TGATCAAAAAACTGGAGCACACATGGAAGGCTTTGGTCCATGATGG s danRer1.chrUn 197748558 46 - 367113659 TTATCAAAAAACTAGAGCATTCCTGGAAGGCCTTGGTTCATGATGG a score=138113.0 s hg17.chr7_random 99868 80 + 778964 --------------------------------------------------------------------------------------GGACACTGTCTCAGTGCATCGCCCAGGCTTCTACACTGAACGGTTCCAGTGCTTCATGTGCAACACAGCATTTAAGAAGA s panTro1.chr6 161458292 80 + 161576975 --------------------------------------------------------------------------------------GGACACTGTCCCAGTGCATCGCCCAGGCTTCTACACTGAACGGTTCCAGTGCTTCATGTGCAACACAGCATTTAAGAAGA s mm5.chr3 65515745 80 - 160575607 --------------------------------------------------------------------------------------GGATACGGTGTCAGTGCATCGTCCAGGCTTCTATGCTGAGCGGTTCCAGCGTTTCATGTGCAACACAGTGTTCAAGAAGA s rn3.chr2 68291635 80 - 258222147 --------------------------------------------------------------------------------------GGACACGGTGTCAGTACATCGTCCAGGCTTCTATGCTGAACGGTTCCAGCGCTTCATGTGCAACACAGTGTTCAAGAAGA s canFam1.chr17 62979102 80 + 66886099 --------------------------------------------------------------------------------------GGACACCGTCTCGGTGCACCGCCCAGGCTTCTATGCTGAACGGTTCCAGCGCTTCATGTGCAACACAGTGTTCAAGAAGA s galGal2.chrUn 96984314 80 + 165033910 --------------------------------------------------------------------------------------GGACACCGTATCTGTGCACAGACCCAGCTTCTATGCTGAAAGATTCCAGCGCTTCATGTGCAACACAGTGTTCAAGAAGA s fr1.chrUn 199766609 80 + 349519338 --------------------------------------------------------------------------------------GGACACTGTGTCGGTCCACCGACCGGGCTTCTACGCCGACAGGTTCCTGAAGTTCATGAGCAACACAGTTTTTAAGAAGA s danRer1.chrUn 197748604 166 - 367113659 GGTAGGTCATCAGTTTCTTTACCACCTTTAAAAGCAATTATTGTGTACATTTTTCCTCACCACGCATTATGAACATTGACTTTTTAGGACACAGTCTCCGTACATCGGCCTGGATTCTATGCTGAACGGTTCCAGCGTTTTATGTGCAACACAGTTTTTAAGAAAA a score=3215.0 s hg17.chr7_random 99948 4 + 778964 TCCC s panTro1.chr6 161458372 4 + 161576975 TCCC s mm5.chr3 65515825 4 - 160575607 TTCC s rn3.chr2 68291715 4 - 258222147 TTCC s canFam1.chr17 62979182 4 + 66886099 TACC s galGal2.chrUn 96984394 4 + 165033910 TACC s fr1.chrUn 199766689 4 + 349519338 GCTC a score=27910.0 s hg17.chr7_random 99952 304 + 778964 ggccaggtgccgtggctcgcacctgtaatcccaggactttgggaggccaaggcggatggatcacctgaggtcaggagttcaagaccagcttggccaacatggtgaaaccccatctctactaaaatcacagaaattagccgggcggtagtggcacatgcctgtaacctcagctacttggtaggccaaggcaggagaatcacttgagcctaggaggcagaggttgcagtgagccaagattgcaccactgcactccagcctgggcaaaagagtgagaccctgtctcaaaaaaagaagaaGATCCCCT s panTro1.chr6 161458376 301 + 161576975 ggccaggtgccgtggctcacacctgtaatcccaggactttgggaggccaaggcggatggatcacctgaggtcaggagttcaagaccagcttggccaacatggtgaaaccccatctctactaaaaacacagaaattagccgggcggtagtggcacatgcctgtaacctcagctacttggtaggccaaggcaggagaatcgcttgagcctaggaggcagaggttgcagtgagccaagattgcaccactgcactccagcctgggcaaaagagtgagaccctgtctcaaaaaaagaaGA---TCCCCT a score=126756.0 s hg17.chr7_random 100256 144 + 778964 TGAAGCCTTCTCCTTCCAAAAAGTTTCGGTCTGGCTCATCTTTCTCTGGGCGAGCAGGCTCCAGTGACAACTCCTGTG----TTACCAGCCATCGGTCTCAGGGGAACACAAGGCACAAACCACAACAAAGGCGGAAGTGGAGCCAGG s panTro1.chr6 161458677 144 + 161576975 TGAAGCCTTCTCCTTCCAAAAAGTTTCGGTCTGGCTCATCTTTCTCTGGGCGAGCAGGCTCCAGTGACAACTCCTGTG----TTACCAGCCATCGGTCTCAGGGGAACATAAGGCACAAACCACAACAAAGGCGGAAGTGGAGCCAGG s mm5.chr3 65516777 145 - 160575607 TGAAGCCTTCTCCTACCAAAAAGTTTCGGTCTGGCCCGTCTTTCTCTCGGCGATCAGGCCCCAGCGGCAACTCCTGCA---CCTCCCAGCTGATGGCCTCTGGGGAACACAGAGCACAAGTGACCACCAAGGCGGAAGTGGAGCCAGG s rn3.chr2 68292660 148 - 258222147 TGAAGCCTTCTCCTACCAAAAAGTTTCGGTCTGGCCCATCTTTCTCTCGGCGATCAGGCCCCAGCGGCAACTCCTGCACTCCTTCCCAGCCGACAGCCTCTGGGGAACACAAAGCACAAGTGACTACGAAGGCGGAAGTGGAGCCAGG s canFam1.chr17 62980242 148 + 66886099 TGAAGCCCTCTCCTTCCAAAAAGTTTCGGTCTGGCTCATCTTTCTCTCGGCGAGCAGGCCCCAGCGGCAACTCCTGCATTACTTACCAGACATCGGTCTCTGGGGAGCACAAGGCACAAGTGACAACCAAGGCGGAAGTGGAGCCAGG s galGal2.chrUn 96984688 139 + 165033910 TGAAGCCATCCCCTTCCAAGAAGAGCCGCTCCGGCACCGCGGTTCCTCGGCGG--AGCTGTCAGGGAGGAGTGCC-------TTCCCAGCTGCACGTGTTGTGTGAGACAAAAGCACAAGTCACGACAGAGGCGGACGTGGAGCAAGG a score=91.0 s hg17.chr7_random 100400 1 + 778964 T s galGal2.chrUn 96984827 1 + 165033910 T a score=273.0 s hg17.chr7_random 100400 1 + 778964 T s panTro1.chr6 161458821 1 + 161576975 T s mm5.chr3 65516922 1 - 160575607 T a score=91.0 s hg17.chr7_random 100400 1 + 778964 T s rn3.chr2 68293457 1 - 258222147 T a score=91.0 s hg17.chr7_random 100400 1 + 778964 T s canFam1.chr17 62980390 1 + 66886099 T a score=8513.0 s hg17.chr7_random 100401 14 + 778964 GTTCACCTTGGTTG s panTro1.chr6 161458822 14 + 161576975 GTTCACCTTGGTTG s mm5.chr3 65517469 14 - 160575607 GTACACCTTGGGCG s rn3.chr2 68293458 14 - 258222147 ATACACCTTGGGCG s canFam1.chr17 62980591 14 + 66886099 GTCCACTTCGGTCG s galGal2.chrUn 96984828 14 + 165033910 TGGTGCCTGGGCTG a score=84539.0 s hg17.chr7_random 100415 107 + 778964 TCCTGATGTTTTACCTCAGACTCCACCTTTGGAGGAAATCAGTGAGGGTTTACCTATTCCTGACCCCAGTTTCTCACCTGTAGTTGGAGAGACCTTGCAAATGCTAA s panTro1.chr6 161458836 107 + 161576975 TCCTGATGTTTTACCTCAGACTCCACCTTTGGAGGAAATCAGTGAGGGTTTACCTATTCCTGACCCCAGTTTCTCACCTGTAGTTGGAGAGACCTTGCAAATGCTAA s mm5.chr3 65517483 107 - 160575607 TCCTGATGTCTTACCTCAGACTCCACCTTTGGAGGAAATAAGTGAGGGTTCACCTGTTCCTGGCCCCAGTTTCTCACCTGTAGTTGGACAACCTTTGCAAATACTAA s rn3.chr2 68293472 107 - 258222147 TCCTGATGTCTTACCTCAGACTCCACCGTTGGAGGAGATAAGTGAGGGTTCACCTGTTCCTGGTCCCAGTTTCTCACCTGCAGTTGGACAACCTTTGCAAATACTAA s canFam1.chr17 62980605 107 + 66886099 TCCTGATGTTTTACCTCAGACTCCACCTTTGGAGAAAATCAGTGAGGTTTCGACTATTCCTGACCCCTATTTCTCACCTGTAGTTGGAGAGACTTTGCCAATGCAAA a score=1184.0 s hg17.chr7_random 100522 5 + 778964 CCACA s panTro1.chr6 161458943 5 + 161576975 CCACA s canFam1.chr17 62980712 5 + 66886099 CTACA a score=1910.0 s hg17.chr7_random 100527 2 + 778964 AG s panTro1.chr6 161458948 2 + 161576975 AG s mm5.chr3 65520720 2 - 160575607 AG s rn3.chr2 68296594 2 - 258222147 AG s canFam1.chr17 62980717 2 + 66886099 AG a score=2528.0 s hg17.chr7_random 100529 6 + 778964 TACAAC s panTro1.chr6 161458950 6 + 161576975 TACAAC s mm5.chr3 65520722 6 - 160575607 TTCAAC s rn3.chr2 68296596 6 - 258222147 TTCAAC a score=29475.0 s hg17.chr7_random 100535 37 + 778964 CTTGGAAAAGCTTGACATTGCAGAGTAAGAGTTCACC s panTro1.chr6 161458956 37 + 161576975 CTTGGAAAAGCTTGACATTGCAGAGTAAGAGTTCACC s mm5.chr3 65520728 37 - 160575607 CTTGGAAAAGCTTGATGTTGCAGAGTCAGAGTTCACC s rn3.chr2 68296602 37 - 258222147 CTTGGAAAAGCTTGATGTTGCAGAGTCAGAACTCACC s canFam1.chr17 62984408 37 + 66886099 CTTGGAAAAGCCTGAAGTTGCAGAGTCCGAGTTCACC a score=1599.0 s hg17.chr7_random 100572 3 + 778964 CAT s panTro1.chr6 161458993 3 + 161576975 CAT s mm5.chr3 65521163 3 - 160575607 CAG s rn3.chr2 68296639 3 - 258222147 CAT s canFam1.chr17 62984726 3 + 66886099 CAG a score=458814.0 s hg17.chr7_random 100575 1048 + 778964 TGAGCACAAAGCCTCAGAAGACCTGAAACAAGATTCTGCCATCTCTGTGATCCCAAGATGTCAGCCCTTGCCCCAGCAATGCTGAGTTTTCTTCTACTTTCCCATTA-AAAAGGAATGTAATG-GAAGCGAGGGGAGCTCTCCATCTTCTTCCTGAAGAAGAACCTAGTCTCTTTCCCCTTCCTCATGAATGGGCATTAGTGCCTC-AGACAGTTGAGGACTGCAGCAACCCCTCCACTCCAGAATTGGGTGG-ATGGATTTTCAATGGGCTAACCTTGGCTTTCACAATTGAGC-TTTTTCAGACCCCCATTCTTCATGCTGGGAATGGGATGGCTGGACTTGGCAGTTTTCTTTCCCCTC----ATCTTTCACCAGGAGCTGGACTC-ATAATTTCCTCAGGACAGACTAGCTGGCACATTATACCCACCTCAGTTCTTTCTCTCTGATCCCTGGAAGAAGATCCCTGTAATCTCTGTAAAGGT-TTTGAGGGGATAAGGGTGTTTAACCAC-CTCCCAACTT--TCTTCTTTTT---------ATTCTGAATAAAGGAAAAAT--GCGCACAGCACGCAAT-----TTCAAGCCAG----TTTCAGATCAAAACCCCAAAAGTGTTG-ACGAGATGCCTAGTCATAGGATTCCCTCAGAAGAACCA--TGGTGTTTGTGAAG-AGAAGTGTGGTGATTGCTCTGCCAGGA-CAGCTCCTCTTTAAACTCCTCCTTTCTTGATGAATTTGTTAAGGCTGGAGGAATGGAGAGAGTGGGACATGGGGTAATCTTTACCCCTTTT-TTTAAAACATGGGGCAGCCGTGGG-CTGGGAGATCATAGCCCTTCCTAGGCAGAATCCTACTCACTGCCAGGGTGTAATGATTA----TTACTGTTTTGCAATTTGAAATATATTCGGTTG--TTTTTGTAAATATGAAGACCT-ATCAAATGAATTTTAGATCATTCTCCAGAGGAGATTTCT--TTTCTCTTCCC-ATCTTTTCCAACAGTGCTCTCCTGCTTGTGGAGCTAAGGT-----AGAGACACCTCTGTCTGTTTAACAGGCAGTCCATATCTATGAGGCTAGCAAATAt s panTro1.chr6 161458996 1048 + 161576975 TGAGCACAAAGCCTCAGAAGACCTGAAACACGATTCTGCCATCTCTGTGATCCCAAGATGTCAGCCCTTGCCCCAGCAATGCTGAGTTTTCTTCTACTTGCCCATCA-AAAAGGAATGTAATG-GAAGCGAGGGGAGCTCTCCATCTTCTTCCTGAAGAAGAACCTACTCTCTTTCCCCTTCCTCATGAATGGCCATTAGTGCCTC-AGACAGTTGAGGACTGCAGCAACCCCTCCACTCCAGAATTGGGTGG-ATGGATTTTCAATGGGCTAACCTTGGCTTTCACAATTGAGC-TTTTTCAGACCCCCATTCTTCATGCTGGGAATGGGATGGCTGGACTTGGCAGTTTTCTTTCCCCTC----ATCTTTCACCAGGAGCTGGACTC-ATAATTTCCTCAGGACAGACTAGCTGGCACATTATACCCACCTCAGTTCTTTCTCTCTGATCCCTGGAAGAAGATCCCTGTAATCTCTGTAAAGGT-TTCGAGGGGATAAGGGTGTTTAACCAC-CTCCCAACTT--TCTTCTTTTT---------ATCCTGAATAAAGGAAAAAT--GCGCACAGCACGCAAT-----TTCAAGCCAG----TTTCAGATCAAAACCCCAAAAGTGTTG-ACGAGATGCCTAGTCATAGGATTCCCTCAGAAGAACCA--TGGTGTTTGTGAAG-AGAAGTGTGGTGATTGCTCTGCCAGGA-CAGCTCCTCTTTAAACTCCTCCTTTCTTGATGAATTTGTTAAGGCTGGAGGAACGGAGAGAGTGGGACATGGGGTAATCTTTACCCCTTTT-TTTAAAACATGGGGCAGCCGTGGG-CTGGGAGATCATAGCCCTTCCTAGGCAGAATCCTACTCACTGCCAGGGTGTAATGATTA----TTACTGTTTTGCAATTTGAAATGTATTCGGTTG--TTTTTGTAAATATGAAGACTT-ATCCAATGAATTTTAGATCATTCTCCAGAGGAGATTTCT--TTTCTCTTCCC-ATCTTTTCCAACAGTGCTCTCCTGCTTGTGGAGCTAAGGT-----AGAGACACCTCTGTCTGTTTAACAAGCAGTCCATATCTATGAGGCTAGCAAATAt s mm5.chr3 65521166 959 - 160575607 TGAGCAGTGAGCCTCAGAAGACCTGAAACAAGACTCTGCTGTCGCTTTGATCCCAAGATGTCAGCCCTTGCCCCAGGAATGCTGAATCGTCTT---CTTGGTCATCA-ACAGAGGAGAGAATGTGGAGCTAGCAGGGCTCT------------------------GACACTGTCTCCCCTTCCTC-----TGGGCAGTAGTGCCTT-TGACAGTTGAGGACAGCATCGTCCCCACCACTCCAGAAGTGGGTGGCGTGAATTTTCCACTGCCT-GCCATGGCTTCTATAGCTGAATATTTTTCAAACCCCCATTCTTTGTGCT-GACATGGGGTTGCTGGACTGGT--GGTTTCCTCCTGTTT----ACCTTTCTCCTGGAGCTGGACTC-TTCATTTCCTCAGGACGGACTGGCTGG-ACATTGTTCCTGCCTTGG--CTCTCCCGCTGGTCTTTG---GAGACTCCCAATGATTTGTATAAAGGT-GTTTGGGGGAAAGTAAGGATCATCCTTACTCCCAACCT--TCTTTTCCTTAAAAAAGGAAAAAAAAAAAAAAAAAAAAC--ACAAAGAGCACACAATGTAAATTTGAGCCAG----TCTCAGATAAAAGTTCTCTAAGTGTTG----------------------------TAGAAGAGCCC--TAGTGTTTGTGAAGCAGAAAGGCTGGGGCTGCCCCACCAG---CAGCTGCTCTCTGACTCCCTCAC---------------TTAGGGTTGAGGGAATAGAGA-----GGGCCTGG------------CCCTTTT-TTAAGACAAAGGGGCAGCCAT--G-TTAGGAGA--GTGGACCTT----AGCAGGACCCTACTCACTGCCAGGTCTT--CGGTTA----TTACTATTCTGCAATTTGGAATGTATCCTCATAGTTTTTTCTAGATATAAAGAATT-ATCAAATG-ATTTTAGACCATTCTCCAAAGGAGATTTCT--TTGTTCTTCCT-ATATTTTCCAACAGTATTCTGCTCTTTGTGGAGCTACGGTGGAG-GGAGATGTTTGTGTCTGTTTAACAGGCAGTCTGTATCTATGAGGCTAGAGAATAT s rn3.chr2 68297036 957 - 258222147 TGAGCAGCGAGCCTTGGAAGACCTGAGACAAGACTCCGCTATGGCTTTGATCCCAAGATGGCAGCCCTTGCCCCAGGAATGCTGAGTCGTCTT---CTCGGTCATCA-ACAGAGGAGAGAATGTGGAGCTAGCAGGGCTCT------------------------GTCTCTGTCTCCCCTTCCTC-----TGGGCAGTAGTGCCTT-TGACAGTTGAGGACAACATCGTCCCCACCACTCCAGAG-TGGGTGGCATGAATTTTCCACTGCCT-GCCATGGCTTCTATAGCTGACT-ATTTTCAAACCCCCATTCTTTGTGCTGGACGCGGGGTTGCTGGCCTAGGT-GGTTTCCTCCTCTTT----ACCTTTCACCTGGAGCTGGACTC-TTAATCTCCTCAGGACAGACTGGCTGG-ACATTGCTCCTACCTTCGATC-CTCCCGCTGGTCTTT----GAGACTCCCAATGATTT-TATGAAGGTGTTTGGGAGGAGAGTGAGGACGGTCCTTACTCCCAGGCTAGTTTTTTCCTT---------A----AAAAAGGAAAGAAAC--ACAAAGAGCACACAGTGTAAGTTTGAGCCAG----TCTCAGATAAACGTTCTTGTA----------------------------------TAGAAGAGCCC--GAGTGTTCGTGAAGTAGAAAGGCTGGGGCTGCCCCGCCAG---CAGCTGCTCTCTGTCTCCCTCAC---------------TTAGGGCTGAGGGAGTAGACA----GGGGCGTGG--CTACACGTACCCTTTTT-TAAAGACAGTGGGGCAGCCAT--G-TTAGGAGA--GTGGACCTT----AGCAGGACCCTACTCACTGCCAGGTCAT-ACAGTTACTACTTACTATTCTGCGATTTGGAATGTATCCTAATAG-TTTTTCTAAATATAAAGAATT-ATCAAATG-ATTTTAGACCATTCTCCAAAGGAGATTTCT--TTGTTCTTCCT-ATATTTTCCAACAGTATTCTGCTCTTTGTGGAGCTACGGTGGAG-GGAGATGTTTGTGTCTGTTTAACAGGCAGTCCGTATCTATGAGGCTAGAGAATAT s canFam1.chr17 62984729 1035 + 66886099 TGAGCAAAAAAACTCAGAAGATCTGGAACCAGATTCTACCAGTTTGGTGATCCCAAAAAG------------CCAGCAATGCTGAGTTTTCTTCTTCGTGGTCATCACAAAAGGAGTGTAATG-GAGGCTAGGGGAGCTCTCTGTCTCCTTTCTGAAGAAGAAC---CTCTTCTTCCCTCTCCTTATGAATGGGCATTAGTGCCTCAAGACAGTTGAGGACAGCAGCATCCTCTCCACTTC-TAGTTGGGTGACACGAGTTTTCATC----------TGGCTTCCACAGTTGAATTGTTTTCAAACTCCCATTCTTCTTGCTGGAAGTGGAGTTGTTGGACCTGGTGATTTTCTTCCTCTTCATCTACCTTTCACCAGGAGCTGGACTCTTTAATTTCCTCAGGACTGATTGGCTGGCACATTATCTCCACCTTTGTGCTTTCTC---------TGGAAGAAGACCCTTGTATTCTTTGTAAAGGT-TTTGGGGAG-TAAGGATGTTAAACCAA-CTCCCACCTT--CCTTTTTTTT----------CCTTAAAAAAGGAAAAAGCTAGCACACAGCACACAAT-----TTGAAGCCAGGCATTTTTAGATCAAAACTGCAGAAATGTCGGGAGAGATGCCTATTTGAGGGGTTCCCTCAGAAGAGCCCCTTGGTGTTTGAAAAATGGAAGTAT-GGAACTGCTTTGCCAGGAGTAGCTCCTCT---AACTTCTCTC---TTGATGAATTTCTTAAGGCTGAAGGAATGGAGAGAGTGGGACATGGGGTATTCCTTACCCCTTTTGTTGAACCAGTAGGGCAGTCATGGGCCCGGAAGATCAGAGCCCTTGCTAGGTGGGACCCTACTTACTGCCAGGCCATCACAATTA----TTACTGTTTTGCAATTTCAAATGTATTCTGCTTG-TTTTTCTAAATATGAAGACTTAATCAAATG-AATTTGAATCCTTCTCAAAAGGAGGTTTCTTCTTGCTCTTCCCTATGTTTTCCAACAGTGTTCTGCTGTTCGAGGAGTTGAGGTGGAGAGGAGGCACCTGTGTCCGTTTAACAGTCAGTCTGTATCTATGAGGCTAGAGAATAT a score=28660.0 s hg17.chr7_random 101623 305 + 778964 tttcttttcttttctttttgaaacagtctcacactgtcgcctgggctagagtgcagtggcgcgatcttggctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggtgcctgccaccatggccagctaattttttgtgtttttagtagagatggggtttcactatgttagccaggctggtctcaactcctgacctcgtgatccgcccacctcggccgcccaaagtgctggggttacaggcgtgagccaccgcgcccggccACAGATAT s panTro1.chr6 161460044 305 + 161576975 tttcttttcttttctttttgaaacagtctcacactgtcgcctgggctggagtgcagtggtgcgatcttggctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggtgcctgccaccatggccagctaattttttgtgtttttagtagagatggggtttcactatgttagccaggctggtctcaactcctgacctcgtgatccgcccacctcggccgcccaaagtgctgtggttacaggcgtgagccaccgcgcctggccACAGATAT a score=1638.0 s hg17.chr7_random 101928 3 + 778964 TTT s panTro1.chr6 161460349 3 + 161576975 TTT s mm5.chr3 65522125 3 - 160575607 TTT s rn3.chr2 68297993 3 - 258222147 TTT a score=75360.0 s hg17.chr7_random 101931 213 + 778964 CTTAAACTCATGAGGAGAGAGCAGATTCTTGCCTCAGTGAAGTCATTGCTGTGCCATGTGTCCTACCCGCTGTCTTCATGCAGGGAGGTTGGAAATGGGGGCCGCATGTGCCCTCTCCT-CCCATCTACAAGAGTTGTGGTTTCCCATCTGATCCTTCCACTCTTGTTAGGGGAGGAAGGGGGCCTGGTATCTCAGGCAGATTGTTGAATTCCT------ s panTro1.chr6 161460352 213 + 161576975 CTTAAACTCATGAGGAGAGAGCAGATTCTCGCCTCAGTGAAGTCATTGCTGTGCCATATGTCCTACCCGCTGTCTTCATGCAGGGAGGTTGGAAATGGGGGCCGCATGTGCCCTCTCCT-CCCATCTACAAGAGTTGTGGTTTCCCATCTGATCCTTCCACTCTTGTTAGGGGAGGAAGGGGGTCTGGTATCTCAGGCAGATTGTTGAATTCCT------ s mm5.chr3 65522128 191 - 160575607 CTTAAACTCCTAGGGAGCCA-CAGA--CTTCCCTCTGTACGGTTGTCGCCATGTCACCTGGCCTGCCCTTACTC----TGCAGAGAAGCTGGAAAT-GGGGCCACG-GAGCCCTCTCCT-TCCTCTC-----AGTTGTGG---CCCATCTGGTCCTGGC-----TGGTGGGGCA------GTGCATGGTGTTTCAGGCTGGCTGTTGAAATCCCACATTA s rn3.chr2 68297996 190 - 258222147 CTTAAACTCCTGGGGAGCCA-CAGA--CTTCCTTCTGTAAGGTTGTCGCCATGCCACCTGGCCTGCCCCTTCCTC---TGTAGAGAAGCTGGAAAC-AGGGCCACG-GAGCCCTCTCCT-TCCTCTC-----AGTTACGG---CCCATCTGGTCCTA-------CGGTGGGGCA------GTGCATGGTGTTTGAGGCCAGCTGTGGAAATCCCACATTA s canFam1.chr17 62985767 210 + 66886099 CTTAGACTCATGGGGACCCAGCAGACTCTTGCCTAGGTGAGATCATTGCTGTGCCACATGTCTTGTCCCTTCTCA---TGCAGAGAACTCAGAAATGGGAGCTATGTAATCCGTCTGTTCCCCATCTCCAAGAGTTGCAGTCCCCCCTCTGGTCCTCTACCTCCTGTCAGGGGAAGAAGGGAGTCTGGCATCTCAGGCAGATTGTTGAATACT------- a score=227926.0 s hg17.chr7_random 102144 305 + 778964 GTTCTATCCCTTCTCCTTCCCT-ACCTTGATAGTAGGTTAGCCCATACCCCAAATAACTGTCTATATTAGACAC-----------CCTCAGCCAGTTTCT----------GGCTGCCTGTC--TGTTGCCATGTTC--TTTTTTACAAGAAGGAAAGAAA--CAA-TTAT---TGCTA---TTTTTTCATAATTTACTATTTATGA---AGTATTTAAGTG-----------------TTTTATTATGGATAGAGTTCTGTAATGGGTGGGAGGGAATATTTGAGGGAGGGCT-GGGTCTTAAGGAAAGGAATGGGGAATCAACATTATTATGAAGTGTCTCTATTTGCCTCTACTTTGTA s panTro1.chr6 161460565 305 + 161576975 GTTCTATCCCTTCTCCTTCCCT-ACCTTGATAGTAGGTTAGCCCATACCCCAAATAACTGTCTATATTAGACAC-----------CCTCAGCCAGTTTCT----------GGCTGCCTGTC--TGTTGCCATGTTC--TTTTTTACAAGAAGGAAAGAAA--CAA-TTAT---TGCTA---TTTTTTCATAATTTACTATTTATGA---AGTATTTAAGTG-----------------TTTTATTATGGATAGAGTTCTGTAATGGGTGGGAGGGAATATTTGAGGGAGGGCT-GGGTCTTAAGGAAAGGAATGGGGAATCAACATTATTATGAAGTGTCTCTATTTGCCTCTACTTTGTA s mm5.chr3 65522319 309 - 160575607 GTTCCTTCCCTGTCCCGTCCC--ACCTTGATAGCAGGTTAGCCAAC-CCCCACGTAACTGTCTATATTAGACAC-----------CCCCAGCCACCTTCT----------GGCTGCCTGTCTTTGCTGCCATGTTC--TTTTTTACAAGAAGGAAACAAA--CAATTTCT---TGCTATTTTTTTTTCATAATTTACTATTTATGA---TGTATTTAAGTG-----------------TTTTATTCAGGACAGGGTTCTGTAAGGGGTGGGAGGGAGTATTTGAGGGAGGGCT-GGGACTTAGGGAAAGGACATGGGATTCAACATTTTTATGGAGTGTTACTATTTGCCTCTACTTTGTA s rn3.chr2 68298186 305 - 258222147 GCTCCTTCTCCATCCCGTCTC--ACCCTGACAGCAGGTTAGCCAG--CCCCACGTAACTGTCTATATTAGACGC-----------CC-CAGCCGGCTTCC----------GGCTGCCTGTCTTTGCTGCCATGTTC--TTTTTTACAAGAAGGAAAGAAA--CAGTTTCT---TGCTA-TTTTTTTTCATAATTTACTATTTATGA---TGTATTTAAGTG-----------------TTTTATTCAGGACAGAGTTCTGTAAGGGGTGGGAGGGAGTATTTGAGGGAGGGCTGGGGACTTA--GAGAGGACATGGGATTCAGCATTTTTATGGAGTGTTACTATTTGCCTCTACTTTGTA s canFam1.chr17 62985977 308 + 66886099 ATCCCGTCTCCATCCCACCCA--GCCTTGATAGTAGGTTAGCCCATCCCCCAAGTAACTGTCTATATTAGACAC-----------CCCCAGCCAGTTTCT----------GGCTGCCTGTCTTTGCTGCCATGTTC--TTTTTTACAAGAAGGAAAGAAA--CAA-TTCT---TGCTATTTTTTTTTCATAATTTACTATTTATGA---TGTATTTAAGTG-----------------TTTTATTCAGGACAGAGTTCTGTAGGGGGTGGGAGGTAATATTTGAGGGA-GGCT-GGGTCTTAGGGAAGAGAATGGGAAATCAACATTTTTATGAAGTGTCACTATTTGCCTCTACTTTGTA s galGal2.chrUn 96989478 326 + 165033910 GCTCTTCCCCCACTGCTGCCCTCACCTT----------------ACAGCCGAAATAACTGTCTATATTAGACGCTGTTCTTACCTTCCCTCCCATCTCCTGTAATGGTTCGGGTTCCTCCTTCTGTTTTTATTTTTTATTTGTTACCAGGAGGGAAGGAAACCAA-CTCCCCATGCTT-TTTTTTCCTATGATTTAATATTTATGAAGTTGTATTTAAGTGGTTTTGTTTCATTTGAATTGTTTTCTGGGGATAGTCTTGCAGCAGTAGGGAGAT---------GGGGGGGGT-GGTGTTTC-------TATATGGGATCCTACAACCTTCTATATGGGATCCGACGACCTTCGCTTTGTA a score=40226.0 s hg17.chr7_random 102449 75 + 778964 TTGTTCAGAAATGGCCAATGCAATATAAAAGTGTTACA-----TGGTTTTAATGTATTAAACTTTAATCAGttttttaga s panTro1.chr6 161460870 75 + 161576975 TTGTTCAGAAATGGCCAATGCAATATAAAAGTGTTACA-----TGGTTTTAATGTATTAAACGTTAATCAGttttttaga s mm5.chr3 65522628 79 - 160575607 TTGTTGAAAAATGACAGATGCAATATAAAAGTAATAAAT-ATCTGGTTTTAATGTATTAAAGTTCTAGCAATCATTTAGA s rn3.chr2 68298491 75 - 258222147 TTGTTGAGAAATGACAAATGCAGTATAAA--TAATAAAT-ATCTGGTTTTACTGTATCGG--TTCTATCAGCTGTTTAGA s canFam1.chr17 62986285 80 + 66886099 TTCTTCAGAAATGGCAAATGTAATATAAAAATGATAAATAATCTGGTTTTAATGTATTAAACTTTCATCAGTTATTTAGA a score=91.0 s hg17.chr7_random 102524 1 + 778964 a s canFam1.chr17 62986365 1 + 66886099 A a score=12619.0 s hg17.chr7_random 102524 136 + 778964 aaaaaataaaattaaaaattaaaaaactgtttatatttatgattataacataattttaatgaaaaattaCATCAATAAATATAGTATTCCACAAATGACCCCAGAATTGCAGTTGCTTCAGCATGTGAAAATATTT s panTro1.chr6 161460945 136 + 161576975 aaaaaataaaattaaaaattaaaaaactgtttatatttatgattataacataattttaatgaaaaattaCATCAATAAATATAGTATTCCACAAATGACCCCAGAATTGCAGTTGCTTCAGCATGTGAAAATATTT a score=58585.0 s hg17.chr7_random 102660 416 + 778964 AAGAAACTCTCTCAGGGTCACGACACTGAAA------TGAAATGGGTTTCATTCATTAAGC-AATGTGCTGAGTGCCCACTCTGTGCCA-TGTGGTGGAGAAGAGAACCCAGTTGGAGGCAATGA--CGCACTCCCCCTCCCACACCTGTCCTGCGGAGGTGGCTGCCC--CCGGGACACT----GAGCCCTGCacatttctcagctgcctttcacctcgcctccaacatgtgcaccggttcttgggaatggactactgcagag--tggtctgtgcttctcccaggcctgcgccatgaaaacctccatgcagggggctccacatt------ccatcctaaaggctgca-tgtggtttcctgggtgacgctggaaaccgggagctgaagatagaggaatccatgtcagtctgggttcctggactgatgaacggcatggaaaa s panTro1.chr6 161461081 416 + 161576975 AAGAAACTCTCCCAGAGTCACGACACTGAAA------TGAAATGGGTTTCATTCATTAAGC-AATGTGCTGAGTGCCCACTCTGTGCCA-TGTGGTGGAGAAGAGAACCCAGTTGGAGGCCATGA--CGCACTCCCCCTCCCACACCTGTCCTGCGGAGGTGGCTGCCC--CCGGGACACT----GAGCCCTGCacatttctcagctgcctttcacctcgcctccaatatgtgcaccggttcttgggaatggactactgcagag--tggtctgtgcttctcccaggcctgcgccatgaaaacctccatgcagggggctccacatt------ccatcctaaaggctgta-tgtggtttcctgggtgacgctggaaactgggagctgaagatagaggaatccatgtcagtgtgggttcctggactgatgaacggcatggaaaa s canFam1.chr16 22931355 426 + 60307850 AAGAAACTCTCCCAGAACCATAAAATTGAAATTTAAGTTGAAAGGATTTCACTCATTTAGTAAATCTATTGGGTATCTACCATACCCTAGTGTTGTAGAGA----AACTTAGTTTTAGACCTTAATTCACACTCTCCCTTCCATGGTTGTCCAG-GGAAATGGCTGCCCAATGTGAATACTCTGAGAATATTATACAATTCTCATCTGCC-TTAGCCtggc------tatgtgaactatctcttggaaa-gaaacattgcagggaatgatctttactattctcagcctttccccataaaaatttccgtgcatgatgctccatattcttttcccatcc-aatgcctggaccttgactctttgggcatcattgaaagccaacagttgaaggtggcagagggcccatcagact-ggTTATTAAACTGATCAACTGCATGTAAAA a score=53751.0 s hg17.chr7_random 103076 577 + 778964 gactccactcttctgatgaccaggaacacactcaactatctgtgaattgagttaaaaataaagtttcattgtgttaagcttcctgcatttgggggtatttgttacattatgtggcattgccctaactaatacaTACTAGGCATTTTGGATCTAAAGATTAACAAACCACAGATCTGTACTCAAAGAACAAGGCCTAGTGAGGAGAGCAGCTACATAATCAGGCAGGTTTCACAACATATCAAGAGCAGTGAAAGGACATGCAGAGGACAGTATCAGATGACTGGAGAGGGGCCCCTGATCAACCCAGAAGCTGCAggcccaggaggagtcagggaagacttcttggaggagactgaaggagtgagagggaattggcaaggctaaggagcgagaaggtggcccagTGTCCGAGGAACTAGGACGGCATGAATGAGTCACACCTGGCATGAGGGGTGGGGGTGCTGCTGTGCCACCAGAGCTTAGAACAGGAGCTTCTGGCAGTGCAGAGGCTCCCACACTCCTCTAGCGACTTGGACTCTGGGGAATCTGGATGTGTTTTCAGGAAGGCAGACTAAGG s panTro1.chr6 161461497 577 + 161576975 gactccactcttctgatgaccagaaacacactcaactatctgtgaattgagttaaaaataaagtttcactgtgttaagcttcctgcatttgggggtatttgttacattatgtggcattgccctaactaatacaTACTAGGCATTTTGGATCTAAAGATTAACAAACCACAGATCTGTACTCAAAGAACAAGGCCTAGTGAGGAGAGCAGCTACATAATCAGACAGGTTTCAGAACATATCAAGAGCAGTGAAAGGACATGCAGAGGACAGTATCAGATGACTGGAGAGGGGCCCCTGATCAACCCAGAAGCTGCAGGCCCAGGAGGAGTCAGGGAAGACTTCTTGGAGGAGACTCAACGAGTGAGAGGGAATTGGCAAGGCTAAGGAGCGAGAAGGTGGCCCAGTGTCCGAGGAACTAGGACGGCATGAATGAGTCACGCCTGGCATGAGGGGTGGGGGCGCTGCTGTGCCACCAGAGCTTAGAACAGGAGCTTCTGGCAGTGCAGAGGCTCCCACACTCCTCTAGCGACTTGGACTCTGGGGAATCTGGATGTGTTTTCAGGAAGGCAGACTAAGG a score=8716.0 s hg17.chr7_random 103653 59 + 778964 TTAGATTTGCAGATTTTTGTTTTTCAACTATTTACTTTTATATATAAAGAGAACATGCA s panTro1.chr6 161462074 59 + 161576975 TTAGATTTGCAGATTTTTGTTTTTCAACTATTTACTTTTATATATAAAGAGAACATGCA s danRer1.chrUn 197751932 57 - 367113659 TTACTTGTGCAAATACT--TTTTTCAAGTTTATACTTTAAAATGTAAAAAGGAAATGGT a score=9410.0 s hg17.chr7_random 103712 39 + 778964 TCTGTTTCTTCTGTCTCCACTCTTAAAAGATTAACTGCT s panTro1.chr6 161462133 39 + 161576975 TCTGTTTCTTCTGTCTCCACTCTTAAAAGATTAACTGCT s canFam1.chr4 15927902 39 + 91326168 TTTGCTATTCCTGCTTCCACTCTTAAAAGATTAACTGCT s danRer1.chrUn 197751989 39 - 367113659 TCTTTATATGTGATCAATATATGTAAACTATTAATTGAT a score=27366.0 s hg17.chr7_random 103751 264 + 778964 GTGGTAA-TGCCCTCCTGCCATCAAGAGCTAGAAAACTGAACAAAATGTATGGAGTGAGTGGT-----------------------GTGCTGAACTGAAACACCTACGAGAGGCTAGCAAGGGCAGC---GACCTGAGATCCCCCCTACCCA-------GAGGCAGCCttccagactcagtgcagagacggcggct--------ctcacagagcccagtgtctcactgaactctggaaacaca-aatcaga-tgtgggaggctgaggcggccagaattggtggtccagaaaggagtgagctgcacaga s panTro1.chr6 161462172 264 + 161576975 GTGGTAA-TGCCCTCCTGCCATCAAGAGCTAGAAAACTGAACAAAATGTATGGAGTGAGTGGT-----------------------GTGCTGAACTGAAACACCTACGAGAGGCTAGCAAGGGCAGC---GACCTGAGATCCCCCCTACCCA-------GAGGCAGCCttccagactcagtgcagagacggtggct--------ctcacagagcccagtgtctcactgaactctggagacaca-aatcaga-tgtgggaggctgaggcggccagaattggtggtccagaaaggagtgagctgcacaga s canFam1.chr4 15927941 273 + 91326168 ATAGTAATTTCCTTTCTGCTGTTATG-----------TGgacaaaacacatgaagc-aatgtttttcagatatcaaaaaataagcagtgctgaaatatgatatctgagtgaagaaggaaaagggagttcagccctataatggccccaactcactccctgggaacag-ttttaagccacagcacaggaagagaaaatgcaaacacatcacagaa------gacttactaagtggaggaaacacacagctagagtttttgaggctgagta----------------caagagagaaaggagctgcacaga a score=786787.0 s hg17.chr7_random 104015 8530 + 778964 gagagaaGAGAGCACCTCAGGTACCTAGAGTGGAGAACACTTGAATATTTGGTTGAATGCTGAGATTTTCATGAGTGGGGTAAGACTCCAGAACCACTGCAAAGTGAAGCTAACCCCAAGGACCTCAGGGCGCAGGGAAGAGCCATTGCAGCTGGGGGAAAAATGGGGGGAAAGAGACCGTGGAGGACAGGAAAGCAAGCAGGGTCCTGACCCCTACAGATCCCCTGAGGCTGGGAGACAGGCGGGAACCTGACTCACATGcagctccaagggttcgtttgccatgggcaggattactgaaagagcctcaggcctgcctgagcctgaggctaagtgaggagggagggcagagcggacagcccagctatagccaccaggccacccagtgctggatcaaaagcaacctccgactaccactgaggggagggagtgcacagatccgggcctgagggtcaggctcagagggaaagccctccggcaaccagttgccacactaagcccaaggaagcactagcaagactgaagtccatcaggcctgagggccgcatagcaacaacaacagaaacaaaactgaaaacaaatccgtttcaactaagaccccgatgcatccaagccccacacagaggcctcacaagaggcccgtctgtccaaaggcataaacaccacatgccttagcttctgcgtcccacacatatggtccaggttttcaacaaaaagtacgagatgagaaaagcaagaaaatatgacaggaaacaaagcacagaattagatccagatacgacccaggtgttctactattgggtaagaatttctaaaaatagtgttagtacatttaaagcactaggaaaagtgtgaattttaaacagagatggaaaatatagtaaagaatcggaaagaaaagatagaaatttaaaacagtaacacagatgaagtgtcatcagatggctcattagcagacctcacacagcctctgcaccccacc-ccccaaaaa----agtcaagtcacactgaaagacacggcctatgaagaatggaaacagaatactgtggcacaacaccaacaggctgaaatacttgagatttgagtcctagaagaagagagagtgaacagggcataggaagtgtttgaagggataatggatgagaatttttcaaaaataatgaaataaacaacagctctgagaaacttgtagagcactgatagggataatcacaaaacaaaacagtaaaattgagaccaaaatggaaatgaaaaatggagtaaataaagggcaaaacaaatagaaaacattgagtcagatgacagattttaacccaaccatatcaataatttcattaaaaggaaacggccgaaacaaaccaattaaaagacaaagatgtttagattagacaaaaaagcaaggctcaactacgtgctgtttataagaaacccactttaaatatagagagatagatatgtatattataagtaaaaggatagcaaaaatatgtcatgcacacactaaccaaaagaaaactacagtttctgtactaatatgaatagatttcaaacagatacaaagggagaaattatagtaatcagagtgttaattcaacaagaagatataacattttaaatgtatgtacttaacaacaaaccttcaaaatacataaacatgaacaaaaactgatagacttgaaggagaaaacagtcacatgaaaaattctagacggagactaaaggttttttctcagtaatcaatagaacaaataaacagaaaataaatcaggatgcagaagacctgaacaacacaatcaacaaagctggccccactgacatttacagaactctgtccaagaatatcagagtacatattcttctcaagagcacatacaacattcccaagagagacaaaaacaaactgttacaactttttaaaaattgaactcatacaacgtatgtttcctgaaacagaaatatttctggaaaattctcaaatgtttggaagttaaatgattcataaaatgacccatgggtcaaataagaagcagaagaaaaatctgagctgaatgttaaggaaaacatatccaaaatcatgggatgcagctgaaataatgcttagagggaaacaaaggtcattaaatgcctatttagaacagaagaaaggtcttaaatcaataaaccaacatttctatataacaaactagaaaaggagactatattaaaagagcagaaggaaagaaattataaatataaacagaaaacaatagagaaaaatcaataaaagcaaatgctgatccattaaaagattaataaaagtgaaaaacttctagccacactgatagagggggagagaaaggaggagagagggagagagagagacagaaagagagagaaggggagagagagaaagagagagaaggggagagagagagaaagagagagaaggggagagagagagaaagagaagggagagagaagggagacaaagaggaggaaaatgactcaatgacacaaattatcagtattggaaga-ggggtcctcaaccacactaccaaagacctctacagtcattacaggg-aaaaaaaagggaatgcagtctacaactttatttccataaattagaaaatgtagatgaaaggggaaattatttgaaagacactttaaaagaagtaatctgaaatcccaaatctattaatgaaattgaattcaaagttaaaaactttccaacaaagaaaattctgtgcttaaatggcttcactactgaattccaccaaacatgtaaagaagacataatacaattctacaaaactcttccacaaaagtggaagagactgcaatattttccaactcattttgagaccagcattacattgataacaagtagtcaaagatattccagagtgaaaaaaaccatacttcaatattcctttttaatgtagacataaaaattgtcaaaaatattagcaaatcaaatccagcaacatataagatggacaatgcatcatacccaagggtggtttatactgggaatgcaagactgattcaatattcaaaaaccaatcaaagttattctctatgtaaatagactaaagaagaaaaaccacatgagttcctatagatacagataaagcatttgacaaaattcaatatccattcataatttaaaataagaagaaaaatctcccagcaaagtaggactagaaggaaacttcctcaacaaaacaaggggcatctacaaatgcctgcaatgctatagttaacactgaaagactaaatgctctcatcctaagttgaagaacaagtaaaagatattcactctcacctctccaactcaaaatcaacattataccatcatactagaaatcctagccagttcaatatgaaaaagtgtgtgtgtg-tgggggggggaggagtggaggacaaaaattgacacagattggaattgaagaaataaaactatctctatAATTCacaaactgattaaacactgggtaaaagaccagaacaaattccttaccaaagaggatatacagatgtcaaataaatataggaaaagatgctcaacaccatatgtcattagggaatagcaaattaaaacaaccatgaagtattgctacacacctattagaatgacctaaatccagaacattgacaacaccaaatgctggcaaggacgtggagcaacaggaactctcatcattgctgatgggaatgcgaagtggcacagccactgtggaagacagcttggtggtttcctacaaaactaaacatactctcaccatatgatccagcaatcatgctccttttaatttacccaaacgagttgaaaacacacaaaaatctgcacacagatgtttatagcagctttattaataattaccaaaacttggaggctaccaagatgtccttcagtaagtgaatggatacataaatgatggtgcatccagacagtggaatactactcagtgctaaaaagaaacaacctatcaagccatgaaaggacatggaggaactttaaacgcatagtactaagtgaaagaagccaaactgaaaaggccacatatcgttgattctaatgacattcaagatggcattctgaaaaaggcagctataaagacagtaccaaggtcagtggctgccactgagtgaagagaaggagggatggacaggcagggcacaggagatttttagggcagtgaaatgactctgtatgacacgataatagaggatgtgtgtcattgtacattaaccagacccgtagaataaacaactagagtgaaccctaatgtaaactgaggcctttgggtgacaatgatgtgttagtgtaggttcattgattgtagcaaaggcaccactctggtggtggacactgataatgcaagaggctatgcttgtgcgggggaagggagttcatggaacctgaactccctgtactcctgcttaattttgctgtgaacctaaaactactctagaaaaataaagctgattaaaaaagtaaccatctctatgctcaggtagtatgatcatgattgcctctttaggcaattccgaagaatgaataaaaatgctcctgaaactagtaagtgtgttcagcaaggtcagacagtacaaggttaatatacaaaatcaattgtatttctataatactagcaattaaaacttggaaatgaaattacatgtttcagttttaaacatgaagcaataagaaaatataaaaacttagatataaatataacaaaatcttgcaaaatttatgtgctgaaacctacaaaacactgattaaagaaatcaaagaagacctaaataaattgagatacataccattttcaaagtttggacaacttgatattgttaaaatgttaactttctccaagctaaactacagagtcaatggaattacaaacaaaattccagcaggattttttgggtaaaacttaataatctgattctaattttatatggaaagtaagaagaactagactaaccaaaaccattttggaaaataagaataaagaataagttgaaagacttctagtaatcatgacagtgtgatatcagcaaaattacagacacatagctcaatgcatgagaataaacagttgagaaatagattcacatctgaatgggcaaaatattttttaaaggtacataagcaattcaatgaaataaaga-tttttttttcaacaaatggtcttggaaaaaactgaaaagtcatttttttaattttaatttttac---tttatttttttgagacggagtctcattctgtcgcccaggctggagtgcaatggcacaatctcggctcactgcaacctccgcctcccgggttcaagagattcttccgcctcagcccactgagtacctgggattacaggcgcgtgccaccatgcctggctaatttttgtatttttgtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacctcgtgatccacccgccttagcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagcctagtcatatgttttttaaaaaggaaaaataaatttctatttataccttgagcaatatgtggacattaattcaaaattattcataattctaaatgtaaaacctaaaactacaaaacctctagaactacaaaactacaaaaccactagaaggaaacagcaaaaacaaatttaacttgggttaggcaaagactgcttagataggacacaaaaatcatgagtcataaaagaacaaactgataaactagactttatcaagatctaaaacttctgctcttcaaaagacacagttaaataaattaaaagataatgcacaggctgggagaaactatttgtaaaatacctattaacaatcttgtgtcctaagaatatataaataattcttaaaacacaacagtaaaaaacaacctaa-----ttttttttttttttttttttttgagacggagtctcgctctgtcccccaggctagatagagtgcagtagagcgatctcggctcaccgcacgctccgcctgccgggttcacgccattctcctgcctcagcttcccgagtagctgggactacaggcgcccgccaccaagcccagctaattttttgtatttttagtacagacggggtttcactgtgttagccaggatggtctcgatctcctgacctcgtgatccgccctcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcaaaacaacctaattttttacatgaacaaaaaaattaaatgtgcatttcacttaaaaggacatatattaatcattaggcaagtacaagttaaaattatagtaatatacacctattaaaatatc-aaaattaaaaaacaaacaaaacacctgccaatactgacaagtattggcaagtactgacaaggatgaattgtaacaggaactctcatacattgctagtcagaatgcaaaatgttacagcccctttggaaaaaagtttggtagtttcttatgcagtttaacatatacttaccatgtgacacagcaattcttctaccacgtaaataaccaactgaagttaacttaggttcacataaaaacttgttcataaatgtttacagaggttttattaatcatcacccaaaatgggaagcaactcaaatacccttcgactgataaatggataaactgtggtgcaccaatacagtggaattctacttataataaaattaaagaaatactgatataaacaacaacatgggtgaatctcaaatgcttcattctaagtaat-aaaaaaaaaggccctaaaggtgaaatactctatgattccatttatataatatctacaataggcaaactggcaggtatggaaaacatcactatttgccaggggctggggatggggatggggaggtggtgacgactgagcatgaaggacttttagaggttaatgaaaatgttctgtatcttgatactggtgggggctacatgaaagtgcatttgtcagaacacatggaaatgtacactaaaatagttttactTACTATAACTCAAAGTTTAAAATGTACTGTAAAAAGAAAACATTTGTCCCTATTTTTTTaaataaaaaatagaagaaatgtaccatgtaaacattaatttttaaaaaactgatagactatattactatcaaaagtaggcttcagaaaagataatactatcaggtataaatatcaggagatattttataatgacaaatggatcaatttattaagaagacatattcacactaaatgtgtatgcacttaacagtgaagtgtcagaagatgtggagcaaaatctaatagaacttaaataacaaacaacaagtaaacaaatagacaagaaaattctcaaatcaattgtctaaattctagctgtaagaaactagaaaaataagacaaacataagcagaaggaagaaaacataagaagagagcagtaatcaatgaaaaggaaataaaacaatagagaaaattaaaaacagaaaatcctggattctctgaaataatcaatgaaattgataaatctctagccacactgatttaaaaaaaccccagcagaaaacataaaaaatcatcaccatcagaaacagtagggaggacatccctgcagatgttatagatgtaaaagattaataaggaaaaactataaatctctggaagctaataaatttgataatttaagtggatgaatttcttgaaagacacaaattactaaagctcacttaagaagaaatgtaaaattttgatatctcattatcttagataaaattaaattcacagtaaaatatttaaaaaagaaaactctagtccctgctgacctgacatttaaaaaaaaatcacttttacacgaacctttcctgaaaagaaaagagaaaggaacgcttaactatctattttataagattagcattatcctaataccaaaagcagataaaaacattttaagaaaactacaaaagccaatatccctcatgaacataggcaaaaagtcctcaacaaaatcttagcaaattgaatacagccgtatgtaaaaaggagaagtcagcatgactgagtggagtttttcccaggtatgcaagtttgttttagccttcaaatatcaatgaatataattcatcatattaagagcctaaaaattgcaagacaaaaacatgcaaataatccaagatacgcagaaaacatttctgacaaaattcaacatcaatgaaatatagctgactagaaatagaaggaaatttccaaaatacctacggttaacattctttgaatagtaaaagattgattgccttcctctaagatcaggagcaaggcaaggatatctgctctcaccacttctatttaacattgtaattggggtcctagccagtgcaataagtgaaaaaaagaaataacatccttggagattgaaaagaaattgattaaactccctttttttcacagacaaaagaattgtctacataatatgtcttaaagaatctattttgagttactggactttaaaagtgagtttagcaatgtcttaggatacaag s panTro1.chr6 161462436 8548 + 161576975 gagagaaGAGAGCACCTCAGGTACCTAGAGTGGAGAACACTTGAATATTTGGTTGAATGCTGAGATTTTCATGAGTGGGGTAAGACTCCAGAACCACTGCAAAGTGAAGCTAACCCCAAGGACCTCAGGGCGCAGGGAAGAGCCATTGCAGCTGGGGGAAAAAT-GGGGGAAAGAGACCGTGGAGGACAGGAAAGCAAGCAGGGTCCTGACCCCTACAGATCCCCTGAGGCTGGGAGACAGGCGGGAACCTGACTCACATGcagctccaagggttcgtttgccatgggcaggattactgaaagagcctcaggcctgcctgagcctgaggctaagtgaggagggagagcagagcggacagcccagctatagccaccaggccacccagtgctggatcaaaagcaacctccgactaccactgaggggagggagtacacagatccgggcctgagggtcaggctcagagggaaagccctcctgcaaccagttgccacactaagcccaaggaagcactagcaagactgaagtccatcaggcctgagggccgcatagcaacaacaacagaaacaaaaccgaaaacaaatccgtttcaactaagaccccgatgcatccaagccccacacagaggcctcacaagaggcccgtctgtcccaaggcataaacaccacatgccttagcttctgggtcccaaacatatggtccaggttttcaacaaaaagtacgagatgagaaaagcaagaaaatatgacaggaaacaaagcacagaattagatccagatacgacccaggtgttctactattgggtaagaatttctaaaaatagtgttagtatatttaaagcactaggaaaagtgtgaattttaaacagagatggaaaatatagtaaagaatcggaaagaaaagatagaaatttaaaacagtaacacagatgaagtgtcatccgatggctcattagcagatcccacacagcctctgcaccccaccaccccaaaaaagtcagtcaagtcacactgaaagacacggcctatgaagaatggaaacagaatactgtggcacaacaccaacaggctgaaatacttgagatttgaatcctagaagaagagagagtgaacagggcataggaagtgtttgaagggataatggatgagaatttttcaaaaataatgaaataaacaacagctctgagaaactcgtagagcactgatagggataatcacaaaacaaaacagtaaaattgagaccaaaatggaaatgaaaaatggagtaaataaagggcaaaacaaatagaaaacattgagtcagatgacagattttaacccaaccatatcaataatttcattaaaaggagacggctgaaacaaaccaattaaaagacaaagatgtttagattagacaaaaaagcaaggctcaactacgtgctgtttataagaaacccactttaaatatagagagatagatatgtatattataagtaaaaggatagcaaaaatatgtcatgcacacactaaccaaaagaaaactacagtttctgtactaatatgaatagatttcaaacagatacaaagggagaaatcatagtaatcagagtgttaattcaacaagaagatataacactttaaatgtatgtacttaacaacaagccttcaaaatacataaacatgaacaaaaactgacagacttgaaggagaaaacagtcacatgaaaaattctagacggagactaaaggttttttctcagtaatcaatagaacaaataaacagaaaataaatcaggatgcagaagacctgaacaacacaatcaacaaagctggccccactgacatttacagaactctgtccaagaatatcagagtacatattcttctcaagagcacatacaacattcccaagagagacaaaaacaaactgttacaactttttaaaaattgaactcatacaacgtatgtttcctgaaacagaaatatttctggaaaattctcaaatgtttggaagttaaatgattcataaaatgacccatgggtcaaataagaagcagaagaaaaatttgagctgaatgttaaggaaaacatatccaaaatcatgggatgcagctgaaacaatgcttagagggaaacaaaggccattaaatgcctatttagaacagaagaaaggtcttaaatcaataaaccaacatttctatataacaaactagaaaaggagactatattaaaagagcagaaggaaagaaattataaatataaacagaaaacaatagagaaaaatcaataaaagcaaatgctgatccattaaaagattaataaaagtgaaaaacttctagccacactgatagagggggagagaaaggaggagagagggagagagagagacagaaagagagagaagaggagagagagaaagagagagaaggggagagagagagaaagagagagaaggggagagagagagaaagagaagggagagagaagggagacaaagaggaggaaaatgactcaatgacacaaattatcagtattggaagagggggtcctcaaccacactaccaaagacctctacagtcattacagggaaaaaaaaagggaatgcagtctacaactttatttccataaattagaaaatgtagatgaaaggggaaattatttgaaagacactttaaaagaagtaatctgaaatcccaaatctattaatgaaattgaattcaaagttaaaaactttccaacaaagaaaattctgtgcttaaatggcttcactactgaattccaccaaacatgtaaagaagacataatacaattctacaaaactcttccacaaaagtggaagagactgcaatattttccaactcatttcgagaccagcattacattgataacaagtagtcaaagatattccaaagtgaaaaaaaccatacttcaatattcctttttaatgtagacataaaaattgtcaaaaatattagcaaatcaaatccagcaacatataagatggacaatgcatcatacccaagggtggtttatactgggaatgcaagactgattcaatactcaaaaaccaatcaaagttattctctatgtaaatagactaaagaagaaaaaccacatgaattcctatagatacagataaagcatttgacaaaattcaatatccattcataatttaaaataagaagaaaaatctcccagcaaagtaggactagaaggaaacttcctcaacaaaacaaggggcatctacaaatgtctgcaatgctatagttaacactgaaagactaaatgctctcatcctaagttgaagaacaagtaaaggatattcactctcacctctccaactcaaagtcaacattataccatcatactagaaatcctagccagttcaatatgaaaaagtgtgtgtgtgttgggggggggaggagtggaggacaaaaattgacacaaattggaattgaagaaataaaactatctctatAATTCacaaactgattaaacactgggtaaaagaccagaacaaattccttaccaaagaggatatacagatgtcaaataaatataggaaaagatgctcaacaccatatgtcattagggaatagcaaattaaaacaaccatgaagtattgttgcacacctattagaatgacctaaatccagaacattgacaacaccaaatgctggcaaggacacggagcaacaggaactctcatcattgctgatgggaatgcgaagtggcacagccactgtggaagacagcttggtggtttcctacaaaactaaacatactctcaccatatgatccagcaatcatgctccttttaatttacccaaatgagttgaaaacacacaaaaatctgcacacagatgtttatagcagctttattaataattaccaaaacttggaggctaccaagatgtccttcagtaagtgaatggatacataaatgatggtgcatccagacagtggaatactactcactgctaaaaagaaacaacctatcaaggcatgaaaggacatggaggaactttaaacgcatagtactaagtgaaagaagccaaactgaaaaggccacatatcgttgattctaatgacattcaagatggcattctgaaaaaggcagctataaagacagtaccaaggtcagtggctgccactgagtggggagaaggagggatggacaggcagggcacaggagatttttagggcagtgaaatgactctgtatgacacgataatagaggatgtgtgtcattgtacattaaccagacccgtagaataaacaactagagtgaaccctaatgtaaactgaggcctttgggtgacaatgatgtgttagtgtaggttcattgattgtagcaaaggcaccactctggtggtggacactgataatgcaagaggctatgcttgtgcgggggaagggagtttatggaacctgaactccctgtactcctgcttaattttgctgtgaacctaaaactactctagaaaaataaagctgattaaaaaagtaaccgtctctatgctcaggtagtatgatcatgattgcctctttaggcaattccgaagaatgaataaaaatgctcctgaaactagtaagtgtgttcagcaaggtcagacagtacaaggttaatatacaaaatcaattgtatttctataatactagcaattaaaacttggaaatgaaattacatgtttcagttttaaacatgaagcaataagaaaatataaaaacttagatataaatataacaaaatcttgcaaaatttatgtgctgaaacctacaaaatactgattaaagaaatcaaagaagacctaaataaattgagatacataccattttcaaagtttggacaacttgatattgttaaaatgttaactttctccaaactaaactacagagtcaaaggaattacaaacaaaattccagcaggatttttttggtaaaacttaataatctgattctaaatttatatggaaagtaagaagaactagactagccaaaaccattttggaaaataagaataaagaataagttgaaagacttctagtaatcatgacagtgtgatatcagcaaaattacagacacatagctcaatgcatgagaataaacagttgagaaatagattcacatctgaatgggcaaaatattttttaaaggtacataagcaattcaatgaaataaagattttttttttcaacaaatggtcctggaaaaaactgaaaagtcatttttttaattttaatttttacttatttatttttttgagacggagtctcattctgtcgcccaggctggagtgcaatggcacaatcttggctcactgcaacctccacctcccaggttcaagggattcttccgcctcagcccactgagtacctaggattacaggcgcatgccaccatgcctggctaatttttgtatttttgtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacctcgtgatccacccgcgttagcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagcctagtcatatgttttttaaaaaggaaaaataaacttctatttataccttgagcaatatgtggacattaattcaaaattattcataattctaaatgtaaaacctaaaactacaaaacctctagaactacaaaactacaaaaccactagaaggaaacagcaaaaacaaatttaacttgggttaggcaaagactgcttagataggacacaaaaatcatgagtcataaaagaacaaactgataaactagactttatcaagatctaaaacttctgctcttcaaaagacacagttaaataaattaaaagataatgcacaggctgggagaaactatttgtaaaatacctaataacaatcttgtgtcctaagaatatacaaataattcttaaaacacaacagtaaaaaacaacctaatttttttttttttttttttttttttttgagacggagtctcactctgtcccccaggctagatagagtgcagtagagcgatctcggctcaccgcacgctccgcctgccgggttcacgccattctcctgcctcagcttcccgagtagctgggactacaggcgcccgccaccaagcctggctaattttttgtatttttagtacagacggggtttcactgtgttagccaggatggtctcgatctcctgacctcgtgatccgccctcctcggcctcccaaagtgctgggactacaggcgtgagccactgcgcccggcaaaacaacctaattttttacatgaacaaaaaaattaaatgtgcatttcactaaaaaggacatatattaatcattaggcaagtacaagttaaaattatagtaatatacatctattaaaatatctaaaattaaaaaacaaacaaaacacctgccaatactgacaagtattggcaagtactgacaaggatgaattgtaacaggaactctcatacattgctagtcagaatgcaaaatgttacagcccctttggaaaagagtttggtagtttcttacgcagtttaacatatacttaccatgtgacacagcaattcttctaccacgtaaataaccaactgaagttaacttaggttcacataaaaacttgctcacaaatgtttacagaggttttattaatcatcacccaaaatgggaagcaactcaaatacccttcgactgataaatggataaactgtggtgcaccaatacagtggaattctacttataataaaattaaagaaatactgatataaacaacaacatgggtgaatctcaaatgcttcattctaagtaataaaaaaaaaaggccctaaaggtgaaatactctatgattccatttatataatatctacaataggcaaactggcaggtatggaaaacatcactatttgccaggggctggggatggggatggggaggtggtgacgactgagcatgaaggacttttagaggttaatgaaaatgttctgtatcttgatactggtgggggctacatgaaagtgcatttgtcagaacacatggaaatgtacactaaaatagttttactTACTATAACTCAAAGTTTAAAATGTACTGTAAAAAGAAAACATTTGTCCCTATTTTTTTaaataaaaaatagaagaaatgtaccatgtaaacattaatttttaaaaaactgatagactatattactatcaaaagtaggcttcagaaaagataatactatcaggtataaatatcaggatatattttataatgacaaatggatcaatttattaagaagacatattcacactaaatgtgtatgcacttaacagtgaagtgtcagaagatgtggagcaaaatctaatagaacttaaataacaaacaacaagtaaacaaatagacaagaaaattctcaaatcaattgtctaaattctagctgtaagaaactagaaaaataagacaaacataagcagaaggaagaaaacataagaagagagcagtaatcaatgaaaaggaaataaaacaatagagaaaattaaaaacagaaaatcctggattctctgaaataatcaatgaaattgataaatctctagccacactgatttaaaaaaaccccagcagaaaacataaaaaatcatcactatcagaaacagtagggaggacattcctgcagatgttacagatataaaagattaataaggaaaaactataaatctctggaagctaataaatttgataatttaagtggatgaatttcttgaaagacacaaattactaaagctcacttaagaagaaatgtaaaattttgatatctcattatcttagataaaattaaattcacagtaaaatatttaaaaaagaaaactctagtccctgctgacctgacatttaaaaaaaaatcacttttacacgaacccttcctgaaaagaaaagtgaaaggaacacttaactatctattttataagattagcattatcctaataccaaaagcagataaaaacattttaagaaaactacaaaagccaatatccctcatgaacataggcaaaaagtcctctacaaaatcttagcaaattgaatacagcagtatataaaaaggagaagtcagcatgactgagtggagttttccccaggtatgcaagtttgttttagccttcaaatatcaatgaatataattcatcatattaagagcctaaaaattgcaagacaaaaacatgcaaataatccaagatatgcagaaaacatttctgacaaaattcaacatcaatgaaatatagctgactagaaatagaaggaaatttccaaaatacctacggttaacattctttgaatagtaaaagattgattgccttcctctaagatcaggagcaaggcaaggatatctgctctcaccacttctatttaacattgtaattggggtcctagccagtgcaataagtgaaaaaaagaaataacatccttggagattgaaaagaaattgattaaactccctttttttcacagacaaaagaattgtctacacaatatgtcttaaagaatctattttgagttactggactttaaaagtgagtttagcaatgtcttaggatacaag a score=2100.0 s hg17.chr7_random 162804 1 + 778964 G s panTro1.chrUn_random 63316229 1 + 240967748 G s mm5.chr7 120613470 1 + 133051633 G s rn3.chr19 646237 1 + 59223525 G s canFam1.chr7 6132703 1 + 83037113 G s galGal2.chr6 31429345 1 + 33893787 G s fr1.chrUn 288551229 1 - 349519338 G a score=41967.0 s hg17.chr7_random 162805 34 + 778964 AATTCCTCGTTCACACAGTTTCTTAAGCTTCCTG s panTro1.chrUn_random 63316230 34 + 240967748 AATTCCTTGTTCACACAGTTTCTTAAGCTTCCTG s mm5.chr7 120613471 34 + 133051633 AATTCTTTGTTGACACAGTTTCGTAAGCTTTCTG s rn3.chr19 646238 32 + 59223525 ACTTCTTTGTTG--ACAGTTTTGTAAACTTTCTG s canFam1.chr7 6132704 23 + 83037113 AATTCCTTGTTC--ACAGCATCTTG--------- s galGal2.chr6 31429346 34 + 33893787 AATTCCTTGTTCACGCAGTTCCTTAGGCTTTCTG s fr1.chrUn 288551230 34 - 349519338 AACTCTTTGTTGACGCAGTTTCGGAGGCTGTCGG s danRer1.chr17 27546692 34 - 35757233 AACTCTTTGTTGACGCAGTTTCTGAGACTGTCTG a score=4792.0 s hg17.chr7_random 162839 3 + 778964 GGA s panTro1.chrUn_random 63316264 3 + 240967748 GGA s mm5.chr7 120613505 3 + 133051633 GGA s rn3.chr19 646270 3 + 59223525 GGA s galGal2.chr6 31429380 3 + 33893787 GGA s fr1.chrUn 288551264 3 - 349519338 GAA s danRer1.chr17 27546726 3 - 35757233 GAA a score=1213.0 s hg17.chr7_random 162839 3 + 778964 GGA s galGal2.chr6 31429380 3 + 33893787 GGA s fr1.chrUn 288551264 3 - 349519338 GAA s danRer1.chr17 27546726 3 - 35757233 GAA a score=1374.0 s hg17.chr7_random 162842 3 + 778964 TGC s canFam1.chr7 6132727 3 + 83037113 CGT s galGal2.chr6 31429383 3 + 33893787 TGC s fr1.chrUn 288551267 3 - 349519338 TGC s danRer1.chr17 27546729 3 - 35757233 TAC a score=3807.0 s hg17.chr7_random 162842 3 + 778964 TGC s panTro1.chrUn_random 63316267 3 + 240967748 TGC s mm5.chr7 120613508 3 + 133051633 TGC s canFam1.chr7 6132727 3 + 83037113 CGT s galGal2.chr6 31429383 3 + 33893787 TGC s fr1.chrUn 288551267 3 - 349519338 TGC s danRer1.chr17 27546729 3 - 35757233 TAC a score=600.0 s hg17.chr7_random 162845 1 + 778964 G s canFam1.chr7 6132730 1 + 83037113 G s galGal2.chr6 31429386 1 + 33893787 G s fr1.chrUn 288551270 1 - 349519338 G a score=1500.0 s hg17.chr7_random 162845 1 + 778964 G s panTro1.chrUn_random 63316270 1 + 240967748 G s mm5.chr7 120613511 1 + 133051633 G s canFam1.chr7 6132730 1 + 83037113 G s galGal2.chr6 31429386 1 + 33893787 G s fr1.chrUn 288551270 1 - 349519338 G a score=-2249.0 s hg17.chr7_random 162846 1 + 778964 ------------------------------------------------------------------------------A s fr1.chrUn 288551271 79 - 349519338 GCCTAGGTTGAAGAAAGAGTGCACATCAGCGAGCTGAGGGTCACACGTGCCAATGCGTGTCCTCACACGGGCGTCTGTA a score=91.0 s hg17.chr7_random 162846 1 + 778964 A s galGal2.chr6 31429922 1 + 33893787 A a score=273.0 s hg17.chr7_random 162846 1 + 778964 A s panTro1.chrUn_random 63316271 1 + 240967748 A s mm5.chr7 120613835 1 + 133051633 A a score=91.0 s hg17.chr7_random 162846 1 + 778964 A s canFam1.chr7 6132731 1 + 83037113 A a score=91.0 s hg17.chr7_random 162846 1 + 778964 A s danRer1.chr17 27550583 1 - 35757233 A a score=119972.0 s hg17.chr7_random 162847 78 + 778964 CCTGTGATGGCTC----GGCGGAGCTCGGTGGCAGCTGTCTCCCTCATCTCCAGTGACACCTGCTGGCTG-TAGCAGGCAGTG s panTro1.chrUn_random 63316272 79 + 240967748 CCTGTGATGGCTC----GGCGGATCTTGGTGGCAGCTGTCTCCCTCATCTCCAGTGACACCTGCTGGCTGGTAGCAGGCAGTG s mm5.chr7 120613836 78 + 133051633 CCTGTGATTGCTC----GGCGGATCTCAGTGGCTGCTGCTTCCCTCATCTCTAGTGATGCTTGTTCACTG-TACCAGGCTGTG s rn3.chr19 646273 78 + 59223525 CCTGTGATTGTTC----GACGGATCTTGGGGGCATCTGCTTCCCTCATTTCTAGTGATGCTTGTTCTCTG-TACCAGGCTGTG s canFam1.chr7 6132732 57 + 83037113 CCTGTGATTGCCCGGCAGGCAGATCTCGGTGGCAGC-------------------------TGCTCACTA-CACCAAGCTATG s galGal2.chr6 31429923 78 + 33893787 CCTGTGATGGCGC----GCCGGATTTCGGTAGCAGCAGCTTCTCTCATCTCCAGCGACGCCTGCTCGCTG-TACCAGGCCGTG s fr1.chrUn 288551350 78 - 349519338 CCAGTGATGGCTC----TGCGGATCTCTGTGGCGGCGGCCTCCCTCATCTCCAGCGACGCCTGCTCGCTG-TACCAGGCTGTG s danRer1.chr17 27550584 78 - 35757233 CCGGTGATGGCTC----TGCGGATCTCGGTGGCTGCTGCCTCTCTCATCTCTAGTGAGGCCTGCTCACTG-TACCAGGCTGTG a score=2727.0 s hg17.chr7_random 162925 2 + 778964 AG s panTro1.chrUn_random 63316351 2 + 240967748 TG s mm5.chr7 120613914 2 + 133051633 TG s rn3.chr19 646351 2 + 59223525 TG s canFam1.chr7 6132789 2 + 83037113 TG s fr1.chrUn 288551428 2 - 349519338 TG s danRer1.chr17 27550662 2 - 35757233 TG a score=53097.0 s hg17.chr7_random 162927 45 + 778964 AGGAGTGCAGATGAGATTGGGGG-CATCTTTCAACGGACCCTGAGC s panTro1.chrUn_random 63316353 46 + 240967748 AGGAGTGCAGATGAGATTGGGGGGCATCTTTCAACGGACCCTGAGC s mm5.chr7 120613916 45 + 133051633 TGGTGTGCAGATGAGATTTGGAG-CATCCTTCAATGGGCCCTGGGC s rn3.chr19 646353 45 + 59223525 TGGTGTGCAGATGAGATTTGGAG-CATCCTTCAATGGGCCCTGAGC s canFam1.chr7 6132791 45 + 83037113 GGGCTTACAAGTGAGATTCAGTG-CATCTTTCAAGGGACACCGAGC s galGal2.chr6 31430146 45 + 33893787 AGGTGTGTGTGTGGCGCTGAGGA-AGGGACTGCACGGAGCTTTACC s fr1.chrUn 288551430 45 - 349519338 TGGTGTGCAGATCAGGTTGGGGG-CATCTTTGAGAGGACCTTGGGC s danRer1.chr17 27550664 45 - 35757233 AGGGGTGCAGATCAGATTGGGCG-CGTCCTTCAGAGGACCCTGAGT a score=-132.0 s hg17.chr7_random 162972 4 + 778964 -AAAG s fr1.chrUn 288551475 4 - 349519338 -AAAA s danRer1.chr17 27550709 4 - 35757233 GAAA- a score=3086.0 s hg17.chr7_random 162972 4 + 778964 -AAAG s panTro1.chrUn_random 63316399 4 + 240967748 -AAAG s mm5.chr7 120613961 4 + 133051633 -GAAG s rn3.chr19 646398 4 + 59223525 -AAAG s canFam1.chr7 6132836 4 + 83037113 -AAAG s fr1.chrUn 288551475 4 - 349519338 -AAAA s danRer1.chr17 27550709 4 - 35757233 GAAA- a score=100.0 s hg17.chr7_random 162976 1 + 778964 C s fr1.chrUn 288551479 1 - 349519338 C a score=1000.0 s hg17.chr7_random 162976 1 + 778964 C s panTro1.chrUn_random 63316403 1 + 240967748 C s mm5.chr7 120614445 1 + 133051633 C s rn3.chr19 646402 1 + 59223525 C s canFam1.chr7 6132840 1 + 83037113 C a score=100.0 s hg17.chr7_random 162976 1 + 778964 C s danRer1.chr17 27555742 1 - 35757233 C a score=160578.0 s hg17.chr7_random 162977 126 + 778964 TAAAGGGCTGCGACTCGTTCACGTCGACGACTGCCCTTCGTATCCTGCCTTCCTTGAGGGCCTG----------------------TGCT-----------------------AAGGCTCTCTCGTCCACCAGG------------------------------------------------------CCACCACGGGCTG-----------------CGTTCACAAGGAATGCTCCCTGCC s panTro1.chrUn_random 63316404 126 + 240967748 TAAACGGCTGCGACTCATTCACGTCGAGGACTGCCCCTCCTATCCTGCCCTCCTTGAGGGCCTG----------------------TGCT-----------------------AAGGCTTTCTCATCCATCAGG------------------------------------------------------CCACCACGGGCTG-----------------CGTTCACAAGGAATGCTCCCTGCC s mm5.chr7 120614446 126 + 133051633 TGAAGGGCTCAGACTCGTGCACATCCAGGGCAGCTCCTCGTATCCTGCCCTCCTTGAGGGCCTG----------------------AGCT-----------------------AAGGCTTTCTCATCCACCAGG------------------------------------------------------CCACCTCGGGCTG-----------------CATTCACAAGGAATGCACCTTGCC s rn3.chr19 646403 126 + 59223525 TGAAGGGCTCAGACTCATGTACATCTAGAGCAGCTCCTTGTATCTTACCCTCTTTGAGGGCCGG----------------------AGCT-----------------------AAGGTTTTCTCATCTACCAGG------------------------------------------------------CCATCTCGGGCTG-----------------CATTCACAAGGAATGTTCCTTGCC s canFam1.chr7 6132841 126 + 83037113 TGAAAGGCTCGGATTCATGCCCTTTGAGGGCTGCCCCTTGTGTCCTGCCTTCCTTGAGGGCTTA----------------------GGCC-----------------------AAGGCTTGCTCATTCACCCGC------------------------------------------------------CCACTGTGGACAG-----------------CATTCGCAAGGAATGCTTCATGCC s galGal2.chr6 31430191 242 + 33893787 TGAAGGGTTCCGACTCGTGCACGTCGAGCGCAGCCCCTCGTATCCGACCCTCCTTCAGGGCTTGAGTTAAGGCCTTCTCATCCACCAGCCCACCGCGCGCCGTGTTCACCAGGAACGCTCCCTGCCTCATCTGGGGGCAGCGGGGAGAGATAAGAGAGCTGGGTGTCAGAGGGCCTCCTACAGCTGGCCCGACACTGGCTGGCCTGGGCTTTGGGTGCTGACCAGAGGGCACTCGCCTCGGC s fr1.chrUn 288551570 126 - 349519338 TGAAAGGCTCCGACTCGTGAACATCCAGAGCTGCGCCTCGTATCCTGCCTTCTTTCAGGGCCTG----------------------AGCG-----------------------AGAGCTTTCTCATCTACCAGA------------------------------------------------------CCGCCGCGCGCCG-----------------AGTTGACCAGGAACGCACCCTGAC s danRer1.chr17 27555743 126 - 35757233 TGAAGGGTTCAGACTCATGAACGTCCAGGGCAGCGCCGCGTATCCTGCCCTCTTTCAGAGCCTG----------------------AGCC-----------------------AGAGCTTTCTCATCCACCAGA------------------------------------------------------CCACCGCGAGCTG-----------------TGTTCACGAGAAACGCTCCCTGTC a score=3497.0 s hg17.chr7_random 163103 4 + 778964 TCAT s panTro1.chrUn_random 63316530 4 + 240967748 TCAT s mm5.chr7 120614572 4 + 133051633 TCAT s rn3.chr19 646529 4 + 59223525 TCGT s canFam1.chr7 6132967 4 + 83037113 TCCT s galGal2.chr6 31430433 4 + 33893787 TGCT s fr1.chrUn 288552283 4 - 349519338 TCAC s danRer1.chr17 27555869 4 - 35757233 GCAT a score=325227.0 s hg17.chr7_random 163107 186 + 778964 CTGCTTTATGGTAAAGTCATTGATGAGG-TGGTGCTTAAGTTCGTTGAGACTGCAGTGCAAGGAGATGCAGTCGCTCTGATACAGCCAATCCTGCAGGG-TGTAGACCCTCTGCATGCCCAGGGACTGCTCGATCCCATCCTGCAAGTAGGGGTAATAAAACATGACGCTGAATCCAAAGGCTGTGGC s panTro1.chrUn_random 63316534 187 + 240967748 CCGCTTTATGGTAAATTCATTGATGAGG-TGATGCTTATGTTCGTTGAGACTGCAGCGCAAGGAGACGCAGTCGCTCTGATACAGCCAATCCTGCAGGGGTGTAGACCCTCTGCATGCCCAGGGACTGCTCGATCCCATCCTTCAAGTAGGGGTAATAAAATATGACGCTGAATCCAAAGGCTGTGGC s mm5.chr7 120614968 186 + 133051633 CTGCTTGATAGTGAAGTCATTGATGAGG-TGATGGTTGTGCTCGTTCAGGTTGCAGTGCAAGGAGACGCAGTCGCTCTGATATAGCAAGTCCTGCAGGG-TGTAGACCCTTTGCACGCCCAGAGATCGTTCTATCCCATCCTGTAAGTAGGGGTCATAAAATATGACGCTGAATCCAAAGGCCTTGGC s rn3.chr19 646533 187 + 59223525 CTGCTTGGTAGTGAAGTCATTGATGAGGTTGGTGGTTGTGCTCGTTCAGATTGCAGTGCAAGGAGACACAGTCACTCTGGTACAGCAAGTCCTGCAGGG-TGTAGACCCTTTGCACGCCCAGAGACCGCTCTACCCCATCCTGTAAGTAGAGGTCATAAAATATGATGCTGAATACATAGGCCTTGTC s canFam1.chr7 6132971 186 + 83037113 GTGCTTTCCAGTAAAGTCCTTGGTGAGG-TGGTGGTGATGTTCACTGAGATTACAGGACAAGGAGACGCAGTCGCTCTCACACAGCCAATCCTGCAGGG-CGCAGACCTTCTGCACACCCAGGGACTGCTCCGTTCCATCCTGGAAGTAGGGCTCCTAAAATATGCTGCTGGATCCAAAGTCCTTGAC s galGal2.chr6 31430451 186 + 33893787 CTGCTTAATCGTGAAGTCGTTGATGAGG-TGGTGGTTGTGTTCGTTAAGGTTGCAGTGCAACGAGACGCAGTCGCTCTGATAGAGCAGGTCCTGGAGCG-TGTACACCCGCTGGACTCCCAGGGACCGCTCTATGCCATCCTGCAGGTACGGGTCGTAGAATATGACGTTGAAGCCGAACGCCTTGGC s fr1.chrUn 288552287 186 - 349519338 CTGTTTGATGGTGAAGTCGTTGATGAGG-TGGTGGTTGTGTTCGTTCAGGTTGCAGTGCAGGGACACGCAGTCGCTCTGGTACAGCAGGTCCTGGAGCG-TGTAGACCCGCTGCACGCCCAGCGAGCGCTCCAGACCGTCCTGGAGGTAGGGGTCATAGAAGATCACGTTGAAGCCAAATGCTTTTGC s danRer1.chr17 27559861 186 - 35757233 CTGTTTGATGGTGAAGTCGTTGATGAGG-TGATGGTTGTGTTCGTTCAGGTTGCAGTGCAGAGACACACAGTCGCTCTGGTACAGCAGGTCCTGTAAGG-TGTAAACTCTCTGCACGCCCAGCGAGCGCTCCAGACCGTCTTGCAGGTACGGGTCGTAGAAGATCACGTTGAAGCCGAACACTTTGGC a score=19000.0 s hg17.chr7_random 163293 19 + 778964 TGGAACTGCAAAAGCCTGC s panTro1.chrUn_random 63316721 19 + 240967748 TGGAACTGCAAAAGCCTGC s mm5.chr7 120615154 19 + 133051633 TCGAACAGCAACTGCCTGC s rn3.chr19 646720 19 + 59223525 TTGAACAGTAACTGCCTGC s canFam1.chr7 6133157 19 + 83037113 TGGAACAGCAGCCACCTGC s galGal2.chr6 31430637 19 + 33893787 TCGGACCGCAACCGCCTGC s fr1.chrUn 288552473 19 - 349519338 CCGCATGGCCACCGCCTGG a score=10027.0 s hg17.chr7_random 163312 13 + 778964 TGCGTGCGACCCT s panTro1.chrUn_random 63316740 13 + 240967748 TGCGTGCGACCGT s mm5.chr7 120615173 13 + 133051633 CCTGTGCGACCTG s rn3.chr19 646739 13 + 59223525 CCAGTGCGACCAA s canFam1.chr7 6133176 13 + 83037113 CCTGTGCAACAAA s galGal2.chr6 31430656 13 + 33893787 GCCGTGCGACCTG s fr1.chrUn 288552492 13 - 349519338 CCTGAGCGACCTG s danRer1.chr17 27562285 13 - 35757233 TGTTTCTGACCGA a score=306853.0 s hg17.chr7_random 163325 203 + 778964 AGCCGATGAGGCCCAGCGTCTTCCCACGAATGCGGGCCACTCCCGAGGCCACCTCGCA-GATCTGCTCCATGCTCTGAACCCGCTTGCCTTCCCACAGTGCCTGGTACAGCCATGTGTTCCTCCGGTACATGTTGAGAATGTGGCAGTTGGTGGAATTGGCTGTCTCTTCCACGGCTGCGGACGGGATGTTTCACACAGCAATT s panTro1.chrUn_random 63316753 203 + 240967748 AGCCGATGAGGTCCGGCGTCTTCCCACGAATGCGGGCCACTCCCGAGGCCACCTCGCAAGATCTGCTCCATGTTCTGAACCCGCTTGCCTTCC-ACAGTGCCTGGTACAGCCATGTGTTCCTCCGGTACATGTTGAGAATGTGGCAGTTGGTGGAATTGGCTGTCTCTTCCACGGCTGCGGACAGGATGTTTCACACAGCAATT s mm5.chr7 120618568 203 + 133051633 AGCCAATGAGGCCCAGTGTTTCCCCTCGGATCCGAGCAGCTCCTGAGGCGACCTCACG-GATCTGTTCCACACTCTGTACTCGAGTGCCTTCTCGGAGGGCCTGGTAGAGCCATGTGTTCCGCCGATACAGATTGAGAATGTGGCAGACTGTCGAATCTGCTGTCTCCTCCACTGCAGCAGATGGGATGTTGCACACAGCGATC s rn3.chr19 646752 203 + 59223525 AGCCAATGAGGCCCAATGTTTCCCCTCGGATCCGAGCAGCTCCCGAGGCAACCTCCTG-GATCTGTTCCACACTTCGTACCTTTGTGCCTTCTCGTAGGGCCTGGTACAGCCATGTGTTCCACTGATACAGATTGAGGATGTGGCAGACTGTCGAATCTGCTCTCTCCTCCACCACAGCAGATGGGATGTTGCACATGGCGATC s canFam1.chr7 6133189 203 + 83037113 GGCCGATAAGGCCCAGCATCTCCCCGTGGACGCAGGCTGCTTGTGAGGTGTCCACCTG-GATCTCCTCAACACCCTGGACCAGTGTGCCTTCCTGCAGCACCTGGTACAACCACGTGTTCTGGAGGTACAGGTGAAGGATGTGGGAGATGCTGGAGTCAGCATTCTCTTCCATCGCCCCGAGTGCAGTAGTGCACGTGGTGATC s galGal2.chr6 31431400 203 + 33893787 AGCCGATGAGGCCGAGCGTCTCGCCCCGGATACGTGCAGCACCAGAGGCCACCTCCCG-GATCTGCTCCACGCTCTGCACCCGCGTGCCCTCCCGCAGCGCCTGGTAGAGCCACGTGTTCCGCCGGTAGAGGTTGAGGACGTGGCAGACGGTGGAGTCGGCCGTCTCCTCCACGGCGGCCGAGGGGATGTTGCAGACGGCGATC s fr1.chrUn 288552581 203 - 349519338 ATCCGATGAGTCCAAGTGTCTCTCCTCGGATGCGCGCTGCCCCTGACGCCACCTCCCG-GATCTGCTCCACGCTCTGGACCCGCGTGCCCTCCCGGAGAGCCTGGTACAACCAGGTGTTGCGTCGGTACAGGTTGAGGATGTGACAAAGCGTTGAGTCCGCCGTTTCTTCGACGGCCGCGGACGGAATGTTGCAGACTGCTATG s danRer1.chr17 27562298 203 - 35757233 AGCCGATGAGTCCGAGCGTCTCTCCTCTGATTCGTGCGGCTCCTGACGCCACCTCTCT-GATCTGCTCCACGCTCTGCACCCGTGTGCCTTCCCGCATGGCCTGATACAGCCACGTGTTCCTGCGGTAGAGATTCAAGATGTGGCAGAGCGTCGAGTCCGCCGTCTCCTCCACCGCAGCCGACGGAATATTACACACCGCAATA a score=200.0 s hg17.chr7_random 163528 2 + 778964 CC s danRer1.chr17 27562501 2 - 35757233 CC a score=100.0 s hg17.chr7_random 163528 1 + 778964 C s galGal2.chr6 31431603 1 + 33893787 C a score=1000.0 s hg17.chr7_random 163528 1 + 778964 C s panTro1.chrUn_random 63316956 1 + 240967748 C s mm5.chr7 120622212 1 + 133051633 C s rn3.chr19 646955 1 + 59223525 C s canFam1.chr7 6133392 1 + 83037113 C a score=100.0 s hg17.chr7_random 163528 1 + 778964 C s fr1.chrUn 288552784 1 - 349519338 C a score=-10455.0 s hg17.chr7_random 163529 5 + 778964 ------------------------------------------------------------------------------------------------CGAGC s panTro1.chrUn_random 63316957 5 + 240967748 ------------------------------------------------------------------------------------------------CGAGC s mm5.chr7 120622213 5 + 133051633 ------------------------------------------------------------------------------------------------CGAGC s rn3.chr19 646956 5 + 59223525 ------------------------------------------------------------------------------------------------CGAGG s canFam1.chr7 6133393 5 + 83037113 ------------------------------------------------------------------------------------------------TGAGC s galGal2.chr6 31433935 5 + 33893787 ------------------------------------------------------------------------------------------------CGAGC s fr1.chrUn 288552785 101 - 349519338 CTGGAACAAACATTTTGTTTGTCACTTCCAGCACCTGAATCTTGCCTGCGAACAGCCTCCATCTCCACTCCTCTCACATCGGCCCTTCAGACTCACCCAGC a score=137755.0 s hg17.chr7_random 163534 94 + 778964 TCGCTGGCAGCCTTGATGTCCACGTTGTCATAGCCACTGCCCACCCCCACGATCACTCTCAAGGACTTGAAATTTGCCAGAACCTCCCTGGTGA s panTro1.chrUn_random 63316962 93 + 240967748 TCACTGGCAGCCTTGATGTCCACGTTGTCATAGCCACTGCCCACCCC-ACGATCACTCTCAAGGACTTGAAATTTGCCAGAACCTCCCTGGTGA s mm5.chr7 120622218 94 + 133051633 TCGCCAGCAGCCTTGATGTCCACGTTGTCGTAGCCACTACCGATTCGCACGATCACTCTCAGGGCCTTGAACTTCTCCAGGTCTTCCCTGGTGA s rn3.chr19 646961 93 + 59223525 TCGCCAACAGCCTGGATGTCCACGTTGTCTTAGTCACTATCAATTCA-GCAATAACTCTCAGGGCCTTGAACTTCTCCAAGTCTTCCCGGGTGA s canFam1.chr7 6133398 94 + 83037113 TGGCCAACAGCCTTGAGGTCAACATGGTCATAGCCGCTGCAGATCTGCAGGTTCACTCTCTAGGCTTTGAGCTTCTCCAGGTCCTCCCTGGTAA s galGal2.chr6 31433940 94 + 33893787 TCCCCCGCTGCTTTGATGTCGATGTTGTCGTAGCCGCTGCCTATTCGAAAAATGACCCGCAAGGCCTTGAACTTCTCCAGGTCTTCTCGAGTCC s fr1.chrUn 288552886 94 - 349519338 TCCCCGGCAGCCTTGATGTCAATGTTGTCGTAGCCACTGCCGATGCGGATAATGATGCGCAGAGCCTTGAACTTCTCCAGGTCCTCTCTGGTCA s danRer1.chr17 27564641 94 - 35757233 TCTCCGGCAGCTTTAATGTCGATGTTGTCGTATCCACTGCCGATGCGGATGATAATCCGGAGGGCTTTGAACTTTTCCAGGTCTTCTCTGGTCA a score=21680.0 s hg17.chr7_random 163628 17 + 778964 -GGTGATTGTGT-GGTGCA s panTro1.chrUn_random 63317055 17 + 240967748 -GGTGATTGTGT-GGTGCA s mm5.chr7 120622312 18 + 133051633 GGGTGATGGTGT-GGTACA s rn3.chr19 647054 18 + 59223525 GGGTGATAGTGT-GGTACA s canFam1.chr7 6133492 18 + 83037113 GGGTGATGGTAT-GGCACA s galGal2.chr6 31434034 18 + 33893787 GCGTGG-GGTGTGGGTACA s fr1.chrUn 288552980 18 - 349519338 GGGTGATGGTGT-GGTACA a score=2463.0 s hg17.chr7_random 163645 23 + 778964 TCATGGGGCCCACGGCTCTGTTT s galGal2.chr6 31434052 23 + 33893787 TCATCCCCCCCACAGCTTCCTTT s fr1.chrUn 288552998 23 - 349519338 TCATGGCCCCTACTGCCTCATTC a score=23833.0 s hg17.chr7_random 163645 23 + 778964 TCATGGGGCCC-ACGGCTCTGTTT s panTro1.chrUn_random 63317072 24 + 240967748 TCATGGCGCCCCACGGCTCTGTTT s mm5.chr7 120622330 23 + 133051633 TCATGGCACCC-ACAGCCTCATTC s rn3.chr19 647072 23 + 59223525 TCATGACACCT-GCAGCCTCATTC s canFam1.chr28 37291924 23 + 42450431 TCATGGCACCC-ACGGCTTCGTTT s galGal2.chr6 31434052 23 + 33893787 TCATCCCCCCC-ACAGCTTCCTTT s fr1.chrUn 288552998 23 - 349519338 TCATGGCCCCT-ACTGCCTCATTC a score=160.0 s hg17.chr7_random 163668 3 + 778964 AGA s fr1.chrUn 288553021 3 - 349519338 AGG a score=1808.0 s hg17.chr7_random 163668 2 + 778964 AG s panTro1.chrUn_random 63317096 2 + 240967748 AG s mm5.chr7 120622353 2 + 133051633 AA s rn3.chr19 647095 2 + 59223525 AA s canFam1.chr28 37291947 2 + 42450431 AG s fr1.chrUn 288553021 2 - 349519338 AG a score=-265.0 s hg17.chr7_random 163670 1 + 778964 A s panTro1.chrUn_random 63317098 1 + 240967748 A s mm5.chr7 120622594 1 + 133051633 C s rn3.chr19 647097 1 + 59223525 C a score=91.0 s hg17.chr7_random 163670 1 + 778964 A s canFam1.chr28 37291949 1 + 42450431 A a score=91.0 s hg17.chr7_random 163670 1 + 778964 A s danRer1.chr17 27568655 1 - 35757233 A a score=53328.0 s hg17.chr7_random 163671 27 + 778964 ACTTTCTCGTGGATTTCCTGCGTGGAC s panTro1.chrUn_random 63317099 27 + 240967748 ACTTTCTCGTGGGTTTCCTGCGTGGGC s mm5.chr7 120622595 27 + 133051633 ACCTTCTCATGGATTTCCTGAGTGGAC s rn3.chr19 647098 27 + 59223525 ACCACCTCATGGATTTCTTGAGTGGAC s canFam1.chr28 37292214 27 + 42450431 ACCTTCTCGTGGATCTCCTGAGTGGAC s galGal2.chr6 31435150 27 + 33893787 ACCTTCTCGTGGATCTCCTGAGTTGAT s fr1.chrUn 288554963 27 - 349519338 ACCTTTTCATGTATCTCCTGTGTGGAC s danRer1.chr17 27568656 27 - 35757233 ACCTTCTCATGGATTTCCTGCGTGGAC a score=11164.0 s hg17.chr7_random 163671 27 + 778964 ACTTTCTCGTGGATTTCCTGCGTGGAC s galGal2.chr6 31435150 27 + 33893787 ACCTTCTCGTGGATCTCCTGAGTTGAT s fr1.chrUn 288554963 27 - 349519338 ACCTTTTCATGTATCTCCTGTGTGGAC s danRer1.chr17 27568656 27 - 35757233 ACCTTCTCATGGATTTCCTGCGTGGAC a score=204797.0 s hg17.chr7_random 163698 124 + 778964 --TGCATCATAGAAGGCCACGGTGGC-------CTTCAGGATGGGCATGTCCACAGTGCAGTCACGGCCGACCAGGAACGCTGCCAGTGAGCGGGGGCTTAGGGGGTCTTTCGTGATCTGGCGGCGAATTCCT s panTro1.chrUn_random 63317126 131 + 240967748 --TGCATCATAGAAGGCCACGGTGGCACAGGTCCTTCAGGATGGGCATGTCCACGGTGCAGTCACGGCCGACCAGGACCGCTGCCAGTGAGCGGGGTCTTGGGGGGTCTTTCATGATCTGGCGGCGAATTCCT s mm5.chr7 120622624 130 + 133051633 --TGCATCACAGAAGGCCACAGTGGC-CAGGTCCTTCAGGATGGGCATCTCCACAGTGCAGTCTCTGCCATCCAGCAGTGCCACCAGGGGGCGGGGGTGCAGGGGGCCGTTCATGATCTGGGGGCGGATACCT s rn3.chr19 647127 123 + 59223525 --TGCATTGCAGGAGGAGACAGTGGC-CAGGTCCTTCAGGATGGGCATTTCCACAGTGCAGTC-------TCCATCAGTGCCACTAGGGGGCGGGGGTACAGGAGGTTGTTCATGATCTGGGGGCGGATACCT s canFam1.chr7 6133510 130 + 83037113 --TGCATCACAGAAGGCCACAGTTGC-CAGGTCCCCCAGGATTGACATCTCCATGCTGCGGTCTGTGCCGCTGAGCAGCACCACCAGAGGGCAGGGATGCATGGGGCTGTTCTTGATCTGGGGGTGAATAAGT s galGal2.chr6 31435179 130 + 33893787 --TGCATCACAGAACGCCACGGTCGC-CAAGTCCTTCAGAATGGGCATCTCCACCGTGCAGTCCCTGCCATCCAGCAGTGCCACCAGGGGCCGGGGGTGCATGGGGCCGTTCATGATCTGAGGACGGATACCT s fr1.chrUn 288554992 130 - 349519338 --GGCATCACAAAAGGCCACGGTGGC-CAGATCTTTGAGGATTGGCATCTCCACAGTGCAGTCGCGGCCATCGAGCAGCGCCACCAGGGGGCGCGGGTGCATAGGCCCATTCATAATCTGGGGACGAATACCT s danRer1.chr17 27568683 132 - 35757233 TGTGCATCACAAAACGCCACGGTTGC-CAAATCCTTTAGGATGGGCATCTCCACAGTACAGTCTCTCCCGTCCAGCAGAGCCACCAGCGGCCGGGGGTGCATGGGGCCATTCATGATCTGAGGCCTTATACCT a score=4848.0 s hg17.chr7_random 163822 3 + 778964 TCA s panTro1.chrUn_random 63317257 3 + 240967748 TCA s mm5.chr3 73033180 3 - 160575607 TCA s rn3.chr19 647250 3 + 59223525 TCA s canFam1.chr7 6133640 3 + 83037113 TCA s galGal2.chr6 31435309 3 + 33893787 GCA s fr1.chrUn 288555122 3 - 349519338 GCA s danRer1.chr17 27568815 3 - 35757233 GCA a score=20156.0 s hg17.chr7_random 163825 44 + 778964 CAAATTCTGTCCAATCGCTGTCTCTTGACTTAGCGCTTATCCAC s panTro1.chrUn_random 63317260 44 + 240967748 CAAATTCTGTCCAATCGCTGTCTCTTGACTTAGCGCTTATCCAC s mm5.chr3 73033183 26 - 160575607 TGA------TCCAG------------GACTCTGTGCTTATCCAC s rn3.chr19 647253 44 + 59223525 CAAACCCTGTCCAATCATTGCTGCTTGATTTTGTGCTTATCTAC s canFam1.chr7 6133643 44 + 83037113 TAAATTCTGTCCAATTGCTGTCTCTTGATTTTGTGCTTATCCAT a score=99890.0 s hg17.chr7_random 163869 199 + 778964 AGGGCCATTCTTTACGGAACTTTGCAACTCTCAGA-TCAAAAGGTAAAGCAGTCCTCTAAGAACTTAGGGGAACTCGCA--------GGAGTCTGTGTGCATGATGCC------------ACTATGAACCCAATATAAATTTGTTCACAAACTCTATAGTTCACACGATGGGCTGTCCGTCTCTTTAAGGGAATATAGCTTCATTGGTTCAAAACCATTT s panTro1.chrUn_random 63317304 199 + 240967748 AGGGCCATTCTTTACGGAACTTTGCAACTCTCAGA-TCAAAAGGTAAAGCAGTCCTCTAAGAACTTAGGGGAACTCGCA--------GGAGTCTGTGTGCATGATGCC------------ACTATGAACCCAATATAAATTTGTTCACAAACTCTATAGTTCACACGATGGGCTGTCCGTCTTTTTAAGGGAATATAGCTTCATTGGTTCAAAACCATTT s mm5.chr3 73033210 215 - 160575607 AAGGTCATTCTTTGACAAACTTTGCAGATATGA-A-TCAAAGGGCAAAGCAGTGAGCTAAGAACCTAGGGGAACTCCCATGAGACTGTGAGTCTGTGTGCACTGGGCCCAACATGTGTGTACT-TGAACCCAAAATAACTGTGTCAACAAG--CTACAGCTCTGGTGGTGGGCTGCCTTTCTTCTTAGGGGGGTGTGGCTTTATCGGTTCACAACCCTTT s rn3.chr19 647298 195 + 59223525 AGGGCCATTCTTTATTGAACTTTGCAACTCTCTGATTCAAAAGGCAAAACAGTCTGCTAAGAACTTAGGGGAACTCACA--------GGAGTCTGTGTGCATTGCACC------------ACTATGGACCCAATATAAATGTGTTCACAAACTCTACAGCTCATGCGATGGGCTG-----ATTTTTCAGGAGGCGCAGCTTCATCGGTTCACCACCATTT s canFam1.chr7 6133899 197 + 83037113 AGGGCCATTCTTTATGGAAGTTGGCAACCCTCTGGTTCAAAAGGCAAAGCAGTCCCCTAAGAATTGAAGAGAATGAGCA--------GGAGTGCATG-ACACTATGTC------------ACTATGAACCCAATATAAAGCTGTCTGTATG--CTATCGTTCACACAAAGGGCTGTTTGTCTTTTTAAGGGAATCTGGGTTTATTGGCTTAAAATTATTT a score=5308.0 s hg17.chr7_random 164068 15 + 778964 AAGGTGATGAAACCC s panTro1.chrUn_random 63317503 15 + 240967748 AAGGTGATGAAACCC s rn3.chr19 647493 15 + 59223525 ACAGCAATGAAGCCC s canFam1.chr7 6134096 15 + 83037113 AGGGCGATGGAACTC a score=-746.0 s hg17.chr7_random 164083 12 + 778964 ATT-----TGGTTGCAA s panTro1.chrUn_random 63317518 15 + 240967748 ATTCTTGCT--TTGCAA s rn3.chr19 647508 10 + 59223525 TTG-----C--TTGAAA a score=79525.0 s hg17.chr7_random 164095 878 + 778964 CTCAGCCACCATCGCGCAGTCAATCAACGAATCTCACCACGACCCCAGGTCTGGAGCTCCTGGAGTCCGCGACCGCTGGGGGTGGAGGCGGCTTCGGCCTGGTGCAGCCAGGTCCTTGCTCCTGCTCTGAGCCTCGGGCGTGGGTTGGGGGTCCACCCGGGTGTCCCGCATGGTGTCTAAGCTCCTCCCTTGCCGGAGCCCTGCGGACTGGAGGAGTGTTCATATCATTAAGGAGCTTTGATAATTATTTTGATTTTCAAAATTATATAATGCAAAAACAACAACAACAAAGAATAAACCTACAAATTTTGACCTTTAAAAGTCAACAAAGAtttttaaagatcaatatttgtaggtttattttatttcttcaattgggacatgttttcgtccttttctgtatgccctgcaatcttttgatgAGATTCAGAAATTTATAAAACAACTGTGTAATGTAGTATGTACAAACTTGCTTACTACAAGATAATACAACAATCAGTGAGGCTGTACATCCTGGTTCTTCATTAACAGTGTCTTCAATGTGTCTTCTCTGGGCTTGTGTGTGGATTTTTAAGGTAAAGATATTTTTTCCCATTGTTTTCCAGACACTGTGGTCCTTTGCTTCCGCAGTTGATTGTAGTGTTTGTTTCTCTGAGGCTGTGGTAAGCATGTAACTTCTCTTCTCAGCAGTCATAAGTTATCATTCTCATTACTCTGCCATTTCCTTTAGCATTCCCTGTTTGGGGAGACAGAATCTAGTCATCAGCGGTAGCCCACAAAGCCAAACCTTTGAACATATGTTCCACTGTTCTCATTCTATACTGAGGGATATACTAAAAGTTGGACGTTTTCTCTTGAGCCCAATTGCTGTTCTGGGA s panTro1.chrUn_random 63317533 877 + 240967748 CTCAGCCACCATCGCGCAGTCAATCAACGAATCTCACCACCACCCCAGGTCTGGAGCTCCTGGAGTCCGCGACCGCTGGGGGTGGACGTGGCTTCGGCCTGGTGCAGCCAGGTCCTTGCTCCTGCTCTGAGCCTCGGGCGTGGGTTGGGGGTCCACCCGGGTGTCCCGCATGGTGTCTAGGCTCCTCCCTTGCCGGAGCCCTGCGGACCGGAGGAGTGTTCATATTATTAAGGAGCTTTGataattattttgatttttaaaattatataattCAAAAACAACAACAACAAAGAATAAACCTACAAATTTTGACCTTTAAAAGTCAACAAAGAtttttaaaggtcaatatttgtaggtttattttatttcttcaattgggacatgttttcgtccttttctgtatgccctgcaatcttttgatgAGATTCAGAAATTTATAAAACAACTGTGTAATGTAGTATGTACAAACTTGCTTACTACAAGATAATACAACAATCAGTGAGGCTGTACATTCTGGTACTTCATTAACAGTGTCTTCAATGTGTCTTCTCTGGGCTTGTGTGTGTATTTTTAAGGTAAAGATATTTTT-CCCATTGTTTTCCAGACACTGTAGTCCTTTGCTTCCGCAGTTGATTGTAGTGTTTGTTTCTCTGAGGCTGTGATAAGCATGTAACTTCTCTTCTCAGCAGTCATAAGTTGTCATTCTCATTACTCTGCCATTTCCTTTAGCATTCTGTGTTGGGGGAGACAGAATCTAGTCATCAGCGGTAGCCCACAAAGCCAAACCTTTGAACATATGTTCCACTGTTCTCATTCTATACTGAGGGAGATACTAAAAGTTGGACATTTTCTCTTGAGCCCAATTGCTGTTCTGGGA a score=2403.0 s hg17.chr7_random 164973 22 + 778964 AAGAAGAAGGGATGTGGTGAAT s panTro1.chrUn_random 63318410 22 + 240967748 AAGAAGAAGGGATGTGGTGAAT s canFam1.chr1 106567819 22 + 124897793 AAATAAACGGGTCTTGCTATAC a score=6958.0 s hg17.chr7_random 164995 21 + 778964 ATAAGCCAGACCTGGTTGCCT s panTro1.chrUn_random 63318432 21 + 240967748 ATAAGCCAGACCTGGTTGCCT s canFam1.chr1 106567841 21 + 124897793 CTAAACTAGATCTGATTGCCT s fr1.chrUn 42096894 21 - 349519338 ACAAAACAGGCCTTGCTGTCT a score=-793.0 s hg17.chr7_random 165016 8 + 778964 ------CGTACAGc--- s panTro1.chrUn_random 63318453 8 + 240967748 ------TGTACAGc--- s fr1.chrUn 42096915 17 - 349519338 CTAAACCTGATCGCATC a score=17834.0 s hg17.chr7_random 165024 195 + 778964 aagcttttccaacccgccttgttttgtttttgttatggctctgttttgttttaggtttttagcagcctgcagcaatggtttttgggttctgtgtctagtgataagtggaaaagggggatgaggaaagggccttactggctcaaccagaaacagaaactaagaactcatggctgtagtctcccgtggatgcccctg s panTro1.chrUn_random 63318461 195 + 240967748 aagcttttccaacccaccttgttttgtttttgttatggctctgttttgttttaggtttttagcagcctgcagcaatggtttttgggttctgtctctagtcataagtggaaaagggggatgaggaaagggccttactggctcaaccagaaacagaaactaagaactcatggctgtagtctcccatggatgcccctg a score=53191.0 s hg17.chr7_random 165219 339 + 778964 TCCTAC----AGTAAAGGAAATGTCTTTGGAATGTAAAAAGAGAGAGAATAATAGG-CAACACCCCAATAGGGAAGAATAAA-----CAAATAACAAAGATGAGAGGTGCAAAGGCCAAGGAGAAAACCTTA----AAAATGTGGTGTTGGAAGTTCTGCTTCAAAGAAATTGGTTCTGGAAAATTCTAAATT-TACTTCTTTTGCTGCCACAGGTGGAAATTTCCTACCCTATGCTTATTATGCTCTTAAATCTTCTAAGGCTTCTC-TGTTCATCCACTAACATTCCAGGGCATTCACAGTGACAGCCAAAGTTCACCTCTTCTTTCTGCTATTCCCATGAAGCTCTT--GTGGT s panTro1.chrUn_random 63318656 342 + 240967748 TTCTAC----AGTAAAGGAAATATCTTTGGAATGTAAAAAGAGAGAAAATAATAGGGCATCACCCCAATAGGGAAGAATGAA-----CAAATAACAAAGATGAGAGGTGCAAAGGCCAAGGAGAAAACCTTA----AAAATGTGGTGTGGGAAGTTCTGCTTCAAAGAAATTGGTTCTGGAAAATTATAAATTCTACTTCTTTTGCTGCCACAGGTGGAAATTTCCTACCCTATGCTTATTATGCTCTTAAATCTTCTAAGGCTTCTCCTGTTCATCCACTAACATTTCAGGGCATTCACAGTGAGAGCCAAAGTTCGCCTCTTCTTTCTGATATTCCCATGAAGGCCTT--GTGGT s canFam1.chr1 106567862 336 + 124897793 TTTTGG----AGCCAAAGAAGGAG-GCTGGAATATTAAGAGAAAAGAGACAGTAGCCTTATATCCAGGCAGGTGGGAATGAATGAAGCAGATGACATAGCT--TAGGTCCAAAATTTAAGGAGGAAGCCAGACCATAAAGCGCGTTTTGGGAAACTTTG-TTGAATGAAAATAACTTTCTAGAATATTAAGTT-CATTTCCCTTGCTATGACAAAGGGACA-ATCCTATCTAACACTCCCCATGCTCCTATATCCTCTAAGGATTCTCTTTCTGTTCCCCTGGTCCTCCAACCTATTCATAGTGAGGATAAAGG---------ACTTTCCATTG--CCTGTGAGGGCCTGCATTGAT s fr1.chrUn 42096932 335 - 349519338 TCCTGCCTTGAGCAAATAAAAGACCCCTGGAATGTGAAGAGACATGAGACAGTGGTCAAATACTCAGGCAGGTAAGCATGAATGAAGCAGATAACACAGACGAGAGGTACAAAGGTCAAAAAGAATTGCAGACCTTAAAATGTGGTATGGGATGCTCTGCTTCAGTGGAAATGTTTCCTAAAAA-GCCATTTT-TTATTCTGTAGCTTTTGTATAGGAGCATCATTTGTCC---------CATACCATTAAATTCTCTATGGACGTTACTTGCTATTTAGTGATTTTCCTTTGAAGGTACCGTGAGAGCTAAAG------TCCTCTTTATGG----CTTATAAGGTGCTGC-ATGAT a score=36368.0 s hg17.chr7_random 165558 211 + 778964 CTGAGTGCTTTTCCA----TTGTTTT----TGGG-ATCTGAGGAAATCTGCACATTTTGT--GAGACTTCTATGTT-AAGCTGTTTTGTAAAAATCTG----TGCCTCATGTCAGAAGTTTGTGAGAGCAAAAGTGCAGGCATTGGGGTTTGGTTCACATATTTCAGAAACACCAAGGACAAATGTTTCC-----TCCTCATAATTTTCAGTCCTATTATTTCAAATGT----------------GTT s panTro1.chrUn_random 63318998 211 + 240967748 CTGAGTGCTTTTCCA----TTGTTTT----TGGG-ATCTGAGGAAATCTGCACATTTTGT--GAGACTTCTATGTT-AAGCTGTTTTGTAAAAATCTG----TGCCTCATGTCAGAAGTTTGTGAGAGTAAAAGTGCAGGCATTGGGGTTTGGTTCACATATTTCAGAAACTCCAAGGACAAATGTTTCT-----TCCTCATAATTTTCAGTCCTATGATTTCAAATGT----------------GTT s canFam1.chr5 65390681 225 + 92064832 CTGAATGTTTTCCCACCACTTCCTTC----TGGGCATCTGGAAGAATCTGTGCCCATTGCTGAGGACCTCTGTGTTAAAGCCATTT----AAATTCTGGTTTGGCTTCATGTCTGAAGTCTCTGAGGG---GTGTGACAATACTGAGATTTGGTTCAGAAATCTCAGGAACACTGGAGACAGATG-----------CCACAT-GTTTTCTGTTTTATTATCTCCAATCTAATGGGGGCTTCAGACATC s fr1.chrUn 42097267 221 - 349519338 ATGCCTCCTCTTCCA----TTGCTTCAAGGGGGG-ATATAAGAATATCTCTGAGTATTTT-GAGGAAGTGCATGTT-AGATCATTT-CTGAAGTTTTCTTTTTCCATCATATCTGAAGTGTGTGAGAG---CAGTGGTGACATTAAGATTTGTTTCAGAAATCTCAGGAACATCAATGACAGATGTTACTTGCTATTTCTGTATTTTTTCTTTTCTTTCTTTCCTTTTT----------------GTT a score=5108.0 s hg17.chr7_random 165769 47 + 778964 CCTGCAAAA-AAATCAGAA--AAAAAATTTA-------TCAGAGCCCAAAGCACCTC s panTro1.chrUn_random 63319209 47 + 240967748 CCTGCAAAA-AAATCAGAA--AAAAAATTTA-------TCAGAGCCCAAAGCACCTC s canFam1.chr5 65390906 49 + 92064832 ACTGTGCAA-AATTCAGAGTCCACGATTTCA-------TCAGAGTACAGAACATCTC s fr1.chrUn 26238092 47 - 349519338 -CAATAAAATCAATCAAAA--AAAAAATCTAATTAGTTTTAGCTCTTACA------- a score=164.0 s hg17.chr7_random 165816 6 + 778964 AGCAGA s panTro1.chrUn_random 63319256 6 + 240967748 AGCACA s canFam1.chr1 106568465 4 + 124897793 --CCTA s fr1.chrUn 26238139 6 - 349519338 AGAGGA a score=2185.0 s hg17.chr7_random 165822 17 + 778964 --TATGATAAAGTTGAATC s panTro1.chrUn_random 63319262 17 + 240967748 --TATGATAAAGCTGAATC s fr1.chrUn 26238145 17 - 349519338 ACTGTG--AAAATTGAAGC a score=25235.0 s hg17.chr7_random 165839 224 + 778964 TTCTATTTCACTTTATTCTTTTTTTCATCTCTGGTAATGTAGGTCAAAAAGTTTTCTTTCCCTTAGTAGAAACTAAC-TTAGAAATGTGAACTCTCT----------------ATGCCAAACATATCACCTATGGAATAGTTTATTGTATCTACTCATCTCAAAGAATTTTTAAGGACCTTAATCCATAGAAAAACTTAGAAACATGCCAGGAATAGAACAAATTCTTAACTGTTACATTA s panTro1.chrUn_random 63319279 224 + 240967748 TTCTATTTCACTTTATTCTTTTTTTCATCTCTGGTAATGTAGGTCAAAAAGTTTTCTTTCCCTTAGTAGAAACTAAC-TGAGAAATGTGAACTCTCT----------------ATGCCAAACATCTCACCTGTGGAATAGTTTATTGTATCTACTCATCTCAAAGAATTTTTAAAGATCTTAATCCATAGAAAAACTTAGAAACATGCCAGGAATAGAACAAATTCTTAACTGTTACATTA s canFam1.chr1 106568690 201 + 124897793 TTGTATTTCACTTC---------------------------------AAAATTCCCTTTTTCTTCATATGAACTAACATTAGAAATTTCAACTCTGTGTTCTCTAATTCCTAAATGGTAAAAATAATATCTATTTA------CATCATATTT-TTTACATCATATAATTGCTAAAATATTAACGTCATAGGGGAGCTTAGAACATTGTCCAAAATATAATAAAGCATACATTGTTACCGTA a score=26458.0 s hg17.chr7_random 166063 195 + 778964 TTTCTTAATGA--GTTATTTTATTAATTAATCTT--ATATAAAGCTTAGTGGGACTGTGATCTGTATGTTTTCCCTGTCCTGTTTTT------------------------------ACGTATGTCAAATTAGCCTATAACTTTAGCTTCAGGGGTT-TCAGAAAACATACTTGAATTTATGTGTTATATAAAAAGTGAATTGGA-----TGATATGCACATCACATTAAGAAAA s panTro1.chrUn_random 63319503 195 + 240967748 TTTCTTAATGA--GTTATTTTATTAATTAATCTT--ATATAAAGCTTAGTGGGACTGTGATCTGTACGTTTTCCCTATCCTGTTTTT------------------------------ATGTATGTCAAATTAGCCTATAATTTTAGCTTCAGGGGTT-TCAGAAAACATACTTGAATTTGTGTGTTATATAAAAAGTGAATTGGA-----TAGTATGCACATCACATTAAGAAAA s canFam1.chr5 65390992 233 + 92064832 TTTTTTAATAACTATCATTTTATAATATCATCTTTAGTATGAAGCTTCCTGGGATTATGTCCTATATGTTTTCACtttctttttttttttttttttttgttttCACTTTCTGATTGAACTTATGTGAAATTCGTCTATGATTTTAGATCCAAAAGTTCTGATAGAATGTGCTGGAATGTACACAT--TTTTATAAGTGAGCCAGGGTACTTAGTAGGCACTTCATATTTATTAAA a score=8474.0 s hg17.chr7_random 166258 61 + 778964 GT-TTTAGTTTGT--GTCTAAGTTCACTGCATAGAAAAAC-------TTATCATTAGTG----TTTCCATTTACT s panTro1.chrUn_random 63319698 61 + 240967748 GT-TTTAGTTTGT--GTCTAAGTTCACTGCATAGAAAAAC-------TTATCATTAGTG----TTTCCATTTACT s canFam1.chr5 65391225 64 + 92064832 ATGTTTGGTTCATAAATATAGGTTTACTTCAGACAAAAAG-------TAATTATTGGAA----TTATCATCCACT s danRer1.chrNA 64271444 66 + 390413307 GT-TTTATTCTCA--GATCATGTTTATT------AAAAACTGCTTAGTTAACATTGGTGAGCATATCTATTAACT a score=12447.0 s hg17.chr7_random 166319 53 + 778964 TTCCTCAA--CATTTATCTGAATGATAGTATAATTTATTTCTAATTGCTTATTAT s panTro1.chrUn_random 63319759 53 + 240967748 TTCCTCAA--CATTTATCTGAATGATAGTATAATTTATTTCTAATTGCTTATTAT s mm5.chr11 99678265 55 + 121648857 TTTTTCAATCTATTTATTTAACTGAGTGTGTAATTAATATAAGATTGCTTATTAT s canFam1.chr5 65391289 52 + 92064832 TTCTTCGA--AATGTATCTGAACCGTGGTGTAACTTAATCTCAAATGTTTATGT- s danRer1.chrNA 64271510 46 + 390413307 --------GTTATCTTTCTGCATGATGATGT-GTTTAGTTGTAATAGATTATTTT a score=8498.0 s hg17.chr7_random 166372 63 + 778964 ATTG----TAGTTTTCCAC---------AGCATATTTTACAATATTCATGTTGTTCCCATATGTAAAAATGTAAGG s panTro1.chrUn_random 63319812 63 + 240967748 ATTG----TAGTTTTCCAC---------AGCATATTTTACAATATTCATGTTGTTCCCATATGTAAAAATGTAAGG s canFam1.chr5 65391341 60 + 92064832 AT------CAGCGATTCTC---------AGCATATTTTACAACTTTCATGGTATTCCTTTAT-TCAGAATGAAGAG s danRer1.chrNA 64271558 75 + 390413307 ATTGAGAATTGTTTTCCTCACATTCATAAGGATGATGTAAAGCATAC-TGTACCTCGCAGGCTTAATGATGAAAAG a score=1526.0 s hg17.chr7_random 166435 8 + 778964 CTTTTCTT s panTro1.chrUn_random 63319875 8 + 240967748 CTTTTCTT s canFam1.chr5 65391401 8 + 92064832 GTTTTTTT a score=8204.0 s hg17.chr7_random 166443 98 + 778964 TGttttaaaaataataaattataggccagtgctgtgtttcatgcttgtaatcacagcacattaaaaggtcgagataggtggatcatgaggtcaggagt s panTro1.chrUn_random 63319883 98 + 240967748 TGCTTTGAAAAAAATAAATTATAggccagtgctgtgtttcatgcttgtaatcacagcacattaaaaggttgagatgggtggatcacgaggtccggagt a score=11230.0 s hg17.chr7_random 166541 139 + 778964 tcaagaccagcctggccaacatggtgaaatcctgtctctactaaaactacaaaaaATATCGCCggcgaggagcggtgactcaagcctgtaat-cccagtactttgggaggccgagacgggtggatcacgaggtcagaaga s panTro1.chrUn_random 177675296 140 - 240967748 tcaacaccagcctggccaacatggtgaaatcccgtttctactaaaactacaaaaaATATAGCCggccaggtgcggtggctcaagcctgtaatccccagcactttgggaggccgagacaggtggatcacaaggtcagaaga a score=20712.0 s hg17.chr7_random 166680 230 + 778964 tcaagaccttcctggctaacacggtgaaaccccgtgtatactaaaaatacacaaaaattagccgggcgtgatggtgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaaccagggaggtggaggttgcagtgagccgaggtctcgccactacactccagcttgggtgacaaagcgagactccatctcaaaaaattaaaaa-aaataaataaa s panTro1.chrUn_random 63319981 231 + 240967748 tcaagaccttcctggctaatacggtgaaaccccgtctatactaaaaatacacaaaaattagccgggcgtgatggtgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggtgtgaacccgggaggtggaggttgcagtgagccgaggtctcgccactacactccagcctgggtgacaaagcgagactccatctcaaaaaattaaaaataaataaataaa a score=32514.0 s hg17.chr7_random 166910 226 + 778964 TTATAGCCTTTCCATT-TGTATAAAAAGAGGAGTAA---TATATTAAGAACATAATAAAAAGTGTCTCTAATATCATTGAAATCTTTATTA---AAATTTTCTTCTAAATGCTCTTTATGGGAGATTATAATGTATTTGTTGTGCAATTTTGTTAC--TCTAACCATATGCTAAGAATTCAAA-ATCTGCTCTT-TATGGGAGCCCAGTTATGGTTGAACATGCTAGTTATCTGGAA s panTro1.chrUn_random 63320212 227 + 240967748 TTATAGCCTTTCCATT-TGTATAAAAAGAGGAGTAA---TATATTAAGAACATAATAAAAAGTGTCTCTAATATCATTGAAATCTTTATTA---AAATTTTCTTCTAAATGCTCTTTATGGGAGATTATAATGTATTTGTTGTGCAATTTTGTTAC--TGTAACCATATGCTAAGAATTCAAA-ATCTGCTCTTCTATGGGAGCCCAGTTATGGTTGAACATGCTTGTTATATAGAA s canFam1.chr5 65391515 229 + 92064832 TTACAGTCTTTACATTCTGTGTAAGAGTAGGAGCAATATTATATTAATAACATAATGAA---TTTCTCTAATGTAATTTAAATGCTTATTCATTAAACTTCATT---AGAGCT-TTTATGATTGAGTGTAATGAATTTTCTGCCCAGTTTTACTGCCACATAAACACATGCCAATATTCAAAACACTTGCTTTT-CATGGGCACACAGTCATAATTTAAAATAGTAGTTTTATAGGA a score=3919.0 s hg17.chr7_random 167136 49 + 778964 AGAGTCTTCTT-----CCGTTGCATGCTTTG-TTTATT---CGGTATTTCACAGGCT-A s panTro1.chrUn_random 63320439 49 + 240967748 AGAGTCTTCTT-----CCATTGCATGCTTTG-TTTATT---CGGTATTTCACAGGCT-A s canFam1.chr5 65391744 51 + 92064832 ----TCTCTTTGATACTTGATACATCTGTGT-TTTATT---TAGAATTTTGGGGGTTAA s fr1.chrUn 26246120 55 - 349519338 ATATTCTTCTT---CCTTAATGAATATATTGATCTAGTTGATGGTATCTAATAAGTT-T a score=5274.0 s hg17.chr7_random 167185 44 + 778964 ATGtttatttaattttattttctaatattat----atattCTTGTATT s panTro1.chrUn_random 63320488 44 + 240967748 ATGtttatttaattttattttctaatattat----atattCTTGTATT s canFam1.chr5 65391795 45 + 92064832 ATTTTCCCTTATTCTTGTTTTGCAATTCCATAACAATATACTTGT--- a score=50571.0 s hg17.chr7_random 167229 223 + 778964 TCCTTGTTAGGATAGGCTGCCTTACATTATTTAATTGTGTTTTTAGATTCTGCCTATATATTATAATTTTGTATGACTATATTCAACTGTGTACAGTTGAATATGAA--------TCAGTCAAATATGAATCAACCACACGTCTATTGCC-AACATAATTCTCTGTTCATTTGCTTGTATAAACA----TTACTCATA-CTTTATTTATGA-----CTTGTGTATTTGTTTAATTAGTTGGT s panTro1.chrUn_random 63320532 224 + 240967748 TCCTTGTTAGGATAGGCTGCCTTACATTATTTAATTGTGTTTTTAGATTCTGCCTATATATTATAATTTTGTATGACTATATTCAACTGTGTACAGTTGAATATGAA--------TCAGTCAAATATGAATCAACCACACGTCTATTGCCTAACATAATTCTCTGTTCATTTGCCTGTATAAACA----TTACTCATT-CTTTATTTATGA-----CTTGTGTATTTGTTTTATTAGTTGGT s canFam1.chr5 65391840 238 + 92064832 --CTTTTAATAGTAGCTTCCACAACATTGGTTAATTGTGGTTTTGTCTTTTACCTATGTACTATGTTTTTTTATGACATTTTCCAACTCAATGCATTTTAAGACAAAATGGGGTTTAATTCAAGTATGAATCAGCCGTATGTCTATTTTC-AGTAAAGttatatatatatttatctatataaataaatGTTACCCATG-CTTTGTTCATGACTTACCTTGTTCGTTTCTTTTGCTGGTTAAT s fr1.chrUn 26246235 227 - 349519338 tGTATTTGAGGGTATGTCACAACACATCTGTTAATTGTGTTTTGATTTTTTA-GTATATATTCTAATTGTGCATGCCAATATTTAACTTTGTACAATTTAAGACATTGTGGAGC-AAAATCATATATGAATTAGCCATATGTCT-TTTCC-AATAGAATTATCTCT--ATTTGCCTGGAAAAATG----TTATCCTTGTTTTTTTTTATAA-----CTTGTATATTTGTTGTGAAGGTTTGT a score=5492.0 s hg17.chr7_random 167452 51 + 778964 G--GTCAATTATTTTTTTAATCCTCTCTGGGTGAGTAGTTGTGGAAATTGTCT---- s panTro1.chrUn_random 63320756 51 + 240967748 G--GTCAATTATTTTTTTAATCCTCTCTGGGTGAGTAGTTGTGGAAATTGTCT---- s canFam1.chr5 65392078 52 + 92064832 GTTATCAATGATTGTGTT-ATCCTGTCTAGGTGAGTTGTCATAAAAATAGAAT---- s fr1.chrUn 26246462 49 - 349519338 T--GTGAATAGTTTTTTA-ATCCTGTGTAGATGAGAAGTCAT-GAAATTCTTG---- s danRer1.chrNA 64272169 52 + 390413307 G--ATCAAGCATTCCTT--ATATTTTACAAGT-ACAGGTCAAAATAAGTATGTGCAT a score=16773.0 s hg17.chr7_random 167503 68 + 778964 TAATTTCCACTT-CTATATATTAATGAATCTATATTA-------CTTTTGTGTTGAAGGAAACACTTCTGTGATTT s panTro1.chrUn_random 63320807 68 + 240967748 TAATTTCCACTT-CTATATGTTAATGAATCTATATTA-------CTTTTGTGTTGAAGGAAACACTTCTGTGATTT s canFam1.chr5 65392130 65 + 92064832 TAATTTCATCAT-CTATTTATTGATAAATTTATATT---------TTCTGTG-TGAGAGAAACACTTTTTTGAATT s fr1.chrUn 26246511 66 - 349519338 TAATTTCAACATCCTATTAATTTGTGAATATATGTGA-------TTTTTGCA-TGGGAGAAACACATT--TGGTTT s danRer1.chr23 19544256 69 - 22442303 TGATCACCACTT-TTATGTCTTTTCAGAACTATATGAATGTCTTCTTCTTTG------GAACTAGTTTGGTACTTT a score=2237.0 s hg17.chr7_random 167571 8 + 778964 GAAGTTAA s panTro1.chrUn_random 63320875 8 + 240967748 GAAGGTAA s fr1.chrUn 26246578 8 - 349519338 GAATATAA s danRer1.chr23 19544325 8 - 22442303 GAAATTAG a score=1820.0 s hg17.chr7_random 167579 2 + 778964 TT s panTro1.chrUn_random 63320883 2 + 240967748 TT s canFam1.chrX 11795063 2 - 126913094 tt s fr1.chrUn 26246586 2 - 349519338 TT s danRer1.chr23 19544335 2 - 22442303 TT a score=5527.0 s hg17.chr7_random 167581 9 + 778964 TTTTTTTAC s panTro1.chrUn_random 63320885 9 + 240967748 TTTTTTTAC s rn3.chr2 178232610 9 - 258222147 TTTTTTTTC s canFam1.chrX 11795065 9 - 126913094 gttttTTAC s fr1.chrUn 26246593 9 - 349519338 CTATCATAA s danRer1.chr23 19544337 9 - 22442303 TTTTTTTGC a score=8265.0 s hg17.chr7_random 167590 8 + 778964 CTCTGAAC s panTro1.chrUn_random 63320894 8 + 240967748 CTCTGAAC s mm5.chr15 1626628 8 - 104138553 CTCTCAAC s rn3.chr2 178232626 8 - 258222147 TTCTCAAC s canFam1.chrX 11795074 8 - 126913094 CTCTGAAC s fr1.chrUn 26246602 8 - 349519338 CTATGTAT s danRer1.chr23 19544346 8 - 22442303 TTCTGTAC a score=6652.0 s hg17.chr7_random 167598 6 + 778964 TTTTTA s panTro1.chrUn_random 63320902 6 + 240967748 TTTTTA s mm5.chr15 1626636 5 - 104138553 -TTTTA s rn3.chr2 178232634 5 - 258222147 -TTTTA s canFam1.chrX 11795082 6 - 126913094 CTTTTA s fr1.chrUn 26246610 6 - 349519338 CTTTTA a score=66844.0 s hg17.chr7_random 167604 133 + 778964 CTGGCCTCCTGCTCCCCAAAGGGACCTTGCTTCTGATGGCTTAGCACAACAAAAAGTCTGTATTGTTGGTCTCAGACACCACTTTCCCGTCCACTATCCTGCGGGGGCTGTTCTTTTGGATAGCTTGCAGGTA s panTro1.chrUn_random 63320908 133 + 240967748 CTGGCCTCCTGCTCCCCAAAGGGACCTTGCTTCTCATGGCTTACCACAACAAAACGTCTGTATTGTTGGTCTCAGACACCACTTTGCCGTCCACTATCCTGTGGGGGCTGTTCTTTTGGATAGCTTGCAGGTA s mm5.chr15 1626641 132 - 104138553 TTGGTCCCTCAGTTCCCAGGGGTTCCCTCCTTCTC-TGCCTCAGTGCCTCAGAACTCTGGTGTCATTAGTCTCGGACACCACTCTGCCATCCACGATCTTACGGGTAGTTGTCTTCTGCACAGTTTGCATGGA s rn3.chr2 178232639 132 - 258222147 TTGGTCCCTCAGTCCCAGGGGGTTCCCTTCTTCTG-AGCCTTAGTGCCTCAGAACTCTGGTATCATTGGTCTCGGACACCACTTTGCCATCCACGACCTTACGGGTAGTTGTCCTCTGGACAGTTTGCATGGA s canFam1.chrX 11795088 133 - 126913094 TTGGCCTCCTGCTCCTCAAAGGGTACCCTGTTTTGCTGCCTCAATGCCTCAGAATTTTGGTGTCGTTGGTCTCAGACACCACCTTGCTGTCCACGATCTTGCGGGTGGTGGTCTTCTGGATGGTCTGCAAGGA a score=13745.0 s hg17.chr7_random 167737 29 + 778964 TTTACTGCTGTCCAGAGCATCCAGGAGAT s panTro1.chrUn_random 63321041 29 + 240967748 TTTACTGCTGTCCAGAGCATCCGGGAGAT s mm5.chr15 1626773 29 - 104138553 GTTGCTGGAGTCCAGGGCATCGTTGAGAC s rn3.chr2 178232771 29 - 258222147 GTTGCTGGAGTCCAGGGCGTCGTTGAGAC s canFam1.chrX 11795221 29 - 126913094 GTTGCTGCTGTCCAGGGCGTCAGTAAGAC s fr1.chrUn 299301261 23 - 349519338 TTTACCGCTGAGTGGTGCTTACT------ a score=6450.0 s hg17.chr7_random 167766 8 + 778964 TGAAATCC s panTro1.chrUn_random 63321070 8 + 240967748 TGAAATCC s mm5.chr15 1627123 8 - 104138553 TGAAATCT s rn3.chr2 178232800 8 - 258222147 TGAAATCA s canFam1.chrX 11795250 8 - 126913094 TGAAGTCC s fr1.chrUn 299301284 7 - 349519338 TGAAGTC- a score=203153.0 s hg17.chr7_random 167774 199 + 778964 TCCCCGTCTTCTAGCAGGCGGCAGTAAGTGGCAATCTCAGCCTCCAGCTCGACCTTGATGTTCCACAGGTCCTCGTGCTCTTGGGCGTGGTAC---CTCTCTTCCCGGTTTTGGGATAGCTCTGACTCCAGGTGCAGCAGGATCCTGTTGAGCTGCTCCATCTGCG--------------TCTACCTCCCTTAGGCTGTTCTCCAAGCTGACTTTC s panTro1.chrUn_random 63321078 199 + 240967748 TTCCCGTCTTCTAGCAGGCGGCAGTAAGTGGCAATCTCAGCCTCCAGCGCGACCTTGATGTTCCACAGGTCCTCGTGCTCTTGGGCGTGGTGC---CTCTCTTCCCGGTTTTGGGATAGCTCTGACTCCAGGTGCAGCAGGATCCTGTTGAGCTGCTCCATCTGCA--------------TCTACCTCCCTCAGGCTGTTCTCCAAGCTGACTTTC s mm5.chr15 1627131 216 - 104138553 TCTCCATCCTCCAGCAAGCGGCGGTAGGTGGCAATCTCTGCCTCAAGCTTCACCTTGATGTTCAAGAGGGCTTCATATTCCTGGGCCTGGCGCTGGCCCTCTGCCCGAGTTTGTGCCAGCTCTGACTCCAGATGCAGAAGGACCCCATTGAGCTGCTCCATCTGTGCCTTGTATCGGGCCTCCACATCCCCGAGGCTGTTCTCCAAGTTGATGTTC s rn3.chr2 178232808 216 - 258222147 TCCCCATCCTCCAGCAAGCGGCGGTAGGCGGCAATCTCCGCCTCAAGCTTGACCTTGATGTTCAACAGGGCTTCATATTCCTGGGTCTGGCGCTGTCCTTCTGCCCGAGTTTGTGCCAGCTCTGATTCCAGATGCAGAAGGACCCCATTGAGTTGCTCCATCTGCGCCCTGTATCTGGCCTCCACTTCCCCGAGGTTGTTCTCCAAGTTGATGTTC s canFam1.chrX 11795258 216 - 126913094 TCCCCGTCTTCCAACAGGCCATGGTAGGTGGCAATCTCAGCCTCCAGCTTGACCTTGACGTTCAGCAGGACCTCGTACTCCTGGGCCTGGTGCTGCCCCTCTGCCCGGGTCTGGGACAGCTCTGACTCCAGGTGCAGCAGGACCCCGTTGAGCTGCTCCATCTGCATCACGTAGCAGGTCTCGACCTCCCTCAGGCTGTTCTCCAAGCTGGCCTTC s fr1.chrUn 299301291 214 - 349519338 --TCCACCGTCCAGCAGAACCTTGTAAGTGGAAATCTCCGCCTCCAGCTTCATCTTCATGTTGAGGAGCGCCTCATAGTCTTGGGTCTGATTTTGGATATTTGCACGTAGTTTGGTCAGCTCGTCCTCCAGGCGCATGATTACGGCGTTGTACTTTTCCATTTCCATGTTGTTTCGAAGCTCCGTGTTGCGTAATGTGTCCTCTAAAGACGCTTTC s danRer1.chr23 19545869 216 - 22442303 TCTCCACCATCCAGTAGCCTCCTGTAGGTGGCGATTTCTGCCTCCAGCTTCATCTTTATGTTCAGCAGAGCCTCGTACTCCTGCGTCTGATGCTGGATGTTACCGCGCAGTTGTGTGAGCTCAGCCTCCAGCTGCAGAATGATAGTGTTGAGATTCTCGATCTCCATGTTGTATCGCATTTCTGTGTCCCGCAGAGTTCCCTCCAGTGACCCTTTC a score=3907.0 s hg17.chr7_random 167973 53 + 778964 AGATA--------------------------------------------------------------------------------TCTCATTGAGT-CCAGTTCGATATCCAAGGACTG-GACTG-------------------TACATCTCAA s panTro1.chrUn_random 63321277 53 + 240967748 AGATA--------------------------------------------------------------------------------TCTCATTGAGT-CCAGTTCGATATCCAAGGACTG-GACTG-------------------TACATCTCAA s mm5.chr15 1627542 133 - 104138553 AGACAGTTGGGGCTGGGGCCACCAAGTGTCTGAGGTCTGGGCCTAGCAGAACTGCAGCAGGTGACTGGAGGATGCTCACCTGGTTTTTCATGGAGT-CCAAGTCAATCTCCAAGGTCTG-GAGGG-------------------TGCGTCTCAG s rn3.chr2 178233024 53 - 258222147 --------------------------------------------------------------------------------TGGTTTTTCATCGAGT-CCAGGTCAATCTCCAAGGTCTG-GAGGG-------------------TGCGTCTCAG s canFam1.chrX 11795474 50 - 126913094 --------------------------------------------------------------------------------AGGTTTCTCATGGAGT-CCAGGTTGATCTCCAAGGACTG-GGCTG----------------------GTCTCAG s fr1.chrUn 299301577 88 - 349519338 ------------------------------------------------------------------AAATATTTCCTTACTAGGCTCTGTTGGGATGCCAGTTCGATTTCCAGGGTCTGTAACTGTCTGGATAGGTCACCAATCTCCATCTGGG s danRer1.chr23 19546085 54 - 22442303 -------------------------------------------------------------------------------TGAAAATCGCAACAATC-ATAACCCAAGAGTTAAGGATTG-AATTT-------------------TCAATTCCGA a score=22249.0 s hg17.chr7_random 168026 55 + 778964 CCCCCTGAGCATCCTCTCAG----------------------CAGCTCCGATC-----------------------------TCAGCGGACTGCATGGTGACTACT s panTro1.chrUn_random 63321330 55 + 240967748 CCCCCTGAGCATCCTCTCAG----------------------CAGTTCCGATC-----------------------------TCAGCGGACTGCATGGTGACTACT s mm5.chr15 1627675 55 - 104138553 CTCCGTGAGTGTGGTCTCAG----------------------CGTCCCTGATT-----------------------------TCGGCAGACTTGGTGGTGACAACT s rn3.chr2 178233077 55 - 258222147 CTCCAAGAGTGTGGTCTCAG----------------------CGTCCCTGATT-----------------------------TCGGCAGACTTGGTGGTGACTATC s canFam1.chrX 11795524 55 - 126913094 CTCCGTGAGGGTCATCTCAG----------------------CTTCTCCGATC-----------------------------TCAGTGGTCTGTGTGGTGACCATT s fr1.chrUn 299301665 106 - 349519338 CCCCCTGGAGAGCTTCTGTGTTCTGTGATACCTGCACCTGCACATCTGCAATCTGACAAGACGCAGGGAAAGACATGAGACATGAGCAGACAGAAAATAGACTTCC a score=560.0 s hg17.chr7_random 168081 2 + 778964 CT s panTro1.chrUn_random 63321385 2 + 240967748 CT s mm5.chr15 1627730 2 - 104138553 GT s rn3.chr2 178233132 2 - 258222147 GT s canFam1.chrX 11795579 2 - 126913094 GT a score=16583.0 s hg17.chr7_random 168083 18 + 778964 GGTGCTCTCCTCAGTCTG s panTro1.chrUn_random 63321387 18 + 240967748 GGTGCTCTCCTCAGTCTG s mm5.chr15 1627732 18 - 104138553 GGTACTCTCCTCAATCTG s rn3.chr2 178233134 18 - 258222147 GGTACTCTCCTCAATCTG s canFam1.chrX 11795581 18 - 126913094 GGTGCTCTCCTCGATCTG s fr1.chrUn 299301823 18 - 349519338 GATGCCTACTTGATTCTC a score=14049.0 s hg17.chr7_random 168101 16 + 778964 CTGGGACCAGTACTTG s panTro1.chrUn_random 63321405 16 + 240967748 CTGGGACCAGGACTTG s mm5.chr15 1627861 16 - 104138553 CTGAGACCAGTACTTG s rn3.chr2 178233152 16 - 258222147 CTGAGACCAGTACTTG s canFam1.chrX 11795599 16 - 126913094 CTGAGACCAGTACTTG s fr1.chrUn 299301841 13 - 349519338 ---ATGCCATCTTTTG a score=119126.0 s hg17.chr7_random 168117 145 + 778964 TCCAGCTCCTCTCAGCTGTTCTCAGCCATCTCGTCATATTGGGCCCAGATGCCTGTCATGATCTTGCCAAGGTCCTGAGACTTGGGGACATCTACCTCCATGGTCAACCA------------------------------------------------AGAGCTGGAAATCAGGTATTATAG----ACCTTTAACTT---------------------- s panTro1.chrUn_random 63321421 145 + 240967748 TCCAGCTCCTCTCAGCTGTTCTCAGTCATCTCGTCATATTGGGCCCAGATGCCTGTCATGATCTTGCCAAGGTCCTGAGACTTGGGGACATCTACCTCCATGGTCAACCA------------------------------------------------AGAGCTGGAAATCAGGTATTATAG----ACCTTCAACTT---------------------- s mm5.chr15 1627877 145 - 104138553 TCCAGTTCCTCGCGGTTCTTCTGAGCCAGCGCTTCATACTGGGCGCGGATGTCCGCCATGATCTTGCTGAGGTCCTGAGATTTGGGGGCATCCACTTCCACAGTCAATCC------------------------------------------------AGAGCTGGCAATCTGGGCTTCCAG----ACCTTGGACTT---------------------- s rn3.chr2 178233168 145 - 258222147 TCCAGTTCCTTACGGCTCTTCTGAGCCAGCTGTTCATACTAGGCGCGGATGTCCGCCATGATCTTGCTGAGGTCCTGAGATTTGGGAGCATCCACTTCCACAGTCAACCC------------------------------------------------AGAACTGGCAATCTGAGCTTCCAG----GCCTTGGACTT---------------------- s canFam1.chrX 11795615 145 - 126913094 TCCAGCTCCTCCCGGTTCTTCTGAGCCAGCTCATCATACTGGGCCCGGATATCTGCCATGATCTTGCTGAGGTCCTGAGATTTGGGGGCATCCAACTCCACCGTCAACCC------------------------------------------------AGAGTTGGCGATTTGGTTTTGTAG----ACCCTTTACTT---------------------- s fr1.chrUn 299301854 142 - 349519338 ---AGATCCTCTGCATTCTTCACTCCAATCTTCTCATAGTTGGTCCTCATGTCCTCCATGATCTGGGCCAGATCTTGTCCTTTGGGAGCGTCGACGTCCACTTGGACGCC------------------------------------------------TGACCTGGAGATCTGATGCCTCAG----CTCCATGACGT---------------------- s danRer1.chr23 19546403 219 - 22442303 TTCAGCTCCTCCTGGTTCTTCAGGGCCATCTTCTCGTACTTGGCTCTGATCTCCTCCATGATCTGGGAAAGGTCTTGTCCCTTAGGAGCATCAACATCCACCTGCACTCCTGACTGGGAGATTTGGTTACGAAGCTCCATTACCTCCTGTTGGGTGGAGAAGCCGTAAAATATGTCTTAAAGCAACGCCTTTAACGAATTACGAGGTGGACAAATGTTT a score=122716.0 s hg17.chr7_random 168262 138 + 778964 ------------------------CCTCCTCATGA---TTCTTCATGAAGAGCAGCTCTTCCTTGAGGGCCTCCATCTCTGTCTCCAGCAGAGGCTGACTGACACTGGTGTTATC-------------AGT-----AATGTCGCACTCCACAAACTGGCACATGGCCAGGTCTGTCTCACACT------------------------------------------------------------------------------------------ s panTro1.chrUn_random 63321566 138 + 240967748 ------------------------CCTCCTCATGA---TTCTTCATGAAGAGCAGCTCTTCCTTGAGGGCCTCCATCTCTGTCTCCAGCAGAGGCTCAGTGACACTGGTATTATC-------------AGT-----AATGTCGCTCTCCACAAACTGGCACATGGCCATCTCTGTCTCACACT------------------------------------------------------------------------------------------ s mm5.chr15 1628661 159 - 104138553 ------------------------CCTCTTCATGATTCTTCTTCATGAACAGAAGTTCTTCCTTGAGTGCCTCGATTTCTGTCTCCAGCTGCAGCCTTGTGATGTTGGTGTCATCTACCACCTTGCGGAGTCCATGGATGTCGCTCTCCACAGACTGGCGCATGGCTAGTTCTGTCTCATACC------------------------------------------------------------------------------------------ s rn3.chr2 178233313 159 - 258222147 ------------------------CCTCCTCATGATTCTTCTTCATGAACAGCAGCTCCTCCTTGAGCGCTTTGATTTCTGTCTCCAGCTGCAACCTTGTGATGTTGGTGTCATCCACCACCTTGCGGAGTCCATGAATGTCACTCTCCACAGACTGGCCCATGGCCAATTCTGTCTCATACT------------------------------------------------------------------------------------------ s canFam1.chrX 11795760 159 - 126913094 ------------------------CCTCCTCGTGGTTCTTCTTCATGAAGAGCAGCTCCTCCTTGAGAGCCTTGATCTCTGTCTCTAGCTGCAGCCCAGTGACATTGGTGTCGTCAATGACCTTGCAGAGCCCATGGATGTCGCTCTCCACGGACTGGCGCGTGGCCAGCTCCGTCTCATACT------------------------------------------------------------------------------------------ s fr1.chrUn 299302070 159 - 349519338 ------------------------CGTTCTCGTGGTTCTTCTTGAGGTAAGCGAGCTCCTCCCTCACGGCTTCAATCTCGCCCTCGATGTTCATCCTGTTCATGTTGGTGTCGTCAATGACTTTCTTCAGCCCAGCGATGTCGGCCTCCACAGACTGACGGATGGCCGTCTCGTTGTCAAACC------------------------------------------------------------------------------------------ s danRer1.chr23 19546622 273 - 22442303 CCAGATGTGCCAGATGTGTACTCACATTGTCATGGTTCTTCTTAAGGAAGATGAGCTCTTCTTTGAGGGCCTCGATCTCGCTCTCAAGGTTCATGCGGTTCAGGTTGGTGTCATCGATGACCTTTCTTAGGCCGGTGATGTCGGCCTCCACACCTTGGCGGATGGACAGCTCAGATTCATACCTGCAGGCACAACAAAGGTCAATGGGTCTCTGTTGATTTTAAGAGCTTCCCATGAGGTCAAAATGATTTGTTTGTTGCTACTCACTTGACT a score=-1677.0 s hg17.chr7_random 168400 5 + 778964 T-----TAAA s panTro1.chrUn_random 63321704 5 + 240967748 T-----TAAA s mm5.chr15 1628820 5 - 104138553 T-----GAAG s rn3.chr2 178233472 10 - 258222147 TGACTCTAAA s canFam1.chrX 11795919 10 - 126913094 TGACTCAGAA s fr1.chrUn 299302382 5 - 349519338 -----TTAAA s danRer1.chr23 19546895 5 - 22442303 -----CTGAA a score=86184.0 s hg17.chr7_random 168405 74 + 778964 GTCATCAGCAGCAAAATGATCATTGTC-AGTCTGCAGGATGATGCAGGCACTGTCTGCAGCAGTGGCAAAGATTT s panTro1.chrUn_random 63321709 74 + 240967748 GTCATCAGCAGCAAAATGATCATTGTC-AGTCTGCAGGATGATGCAGGCACTGTCTGCAGAAGTGGCAAAGATTT s mm5.chr15 1629104 75 - 104138553 GTCATCGGCGGCAAGGCGGGCATTGTCGAATCTGCAAGACGATGCGGGCATTGTCCACAGAATTCGCAAAGATCT s rn3.chr2 178233482 74 - 258222147 GTCATCAGCGGCAAGACGGGCATTGTC-GATCTGCAGGTCGGTGCGGGCATTGTCCACAGAATTCGCAAAGATCT s canFam1.chrX 11795929 74 - 126913094 ATCGTCAGCAGCGAGCCGGGCCTTGTC-AATCTGCAGAACGATGCGGGCATTGTCCACAGCACTTGCAAAGATCT s fr1.chrUn 299302387 74 - 349519338 GTCGTCAGCAGCGAGACGGGCATTGTC-AATCTGGAGGACCAAACGAGCGTTGTCTTCAATGCTGTCAAAGATCT s danRer1.chr23 19546900 74 - 22442303 GTCATCAGCTGCCAGGCGGGCGTTGTC-AATCTGGAGCACTAGACGAGCATTGTTTGTGGTGGCATCAAAGATCT a score=91.0 s hg17.chr7_random 168479 1 + 778964 t s danRer1.chr23 19546974 1 - 22442303 T a score=333186.0 s hg17.chr7_random 168479 3749 + 778964 ttttattagtctaattgtctgtctttatgctagtaacataagattttgattactgtagatttctaacatgtcttgaaatcaggaattgtaatgcttccaactttttttatgtggtcccctgaaattccgtatactttggggagtcacattctctgtttctgtcaaaaataatattaagaatttcatagggattgtattaaatctgcagctcactttgggcattatagacacgttcaaaatattaaatttttaactcttgaacaaaaacatgttgaagaataaattgtttaattatcatgtatttgtgaattttatgaattttcttcggttattgatttctagttttaatccattttggtcagaaattatagtctgtagccttcagtttttattatactttaagttctaggatacatgtgcagaacgtacaggtttgttatacaggtatacatg-tgttatgttggttt-gctgcacccatcaac-tcaacatttacattaagtgtt-ctcctaatgctatccctttcatagccccccacccccaaacaggcactagcgtttgatgttccctgtcctgtgtccacatgttctcattgtttaactcctacctatgagtgaaaacatgcagtgtttgtttttctgtccttgtgatagtttgctgagaatgatggtttccagcttcatccatgtccctgcaaatgacatgaactcatccttttttaaggctgcgtagtattccatggggtatatgtgtcacaatttcttaatccagtctatcattgatggacatttgggtt-ggttccaagactttgctattctgaacagtg-ccacaataaacatacgtgtgcatgtgtttttatagtagcatgattcataatcctttggatatatacccagtaat-gggattgct-gggtcaaatggtatttctggttgtagatacttgaggaattaccacactgtcttccacagtgtttgaactaatttacactccaacccacagtgtaaaagcgtttttgtttttccacgtcctctccagcatctgttgtttcctgacattttaatgat-ccccattctaactagcgtaagatggtatctcat-tgtggttttcatttgcatttctctgatgaccagtgatgatgagcaatttttcatgtctgttggttacataaatgtcttcttttgagaagtgtctgttcatatcctttgcccactttttgatgggattgctcgtttttttcttgtaaatttgtttaaattctttgtagattctggatgtgagtcctttgtcagatgggtagattgcaaaaattttctcccattctgtaggttgcctgttcactctaatgatagtttcgtttgctgtgtagaagcttttaagtttaattagatttcatttgtctattttggcttttgttgccattgtttttggtgttttagtcatgaagtctttgcccatgcctatgtcctgaatggtattgcccaggttttctcttaggtttttatggttttgggtcttacatttaagtctttaatccatcttgagtcaatttatgtatagggtgtaaggaagaaatccagtttcagttttctgcatatggctcgccatttttcccagcaacatttattaaataagaaatcctttccccattgtttgtttttgtcacatttgtcgaagatccaatggttgtagatgtgtgatggtatttctgaggcctctgtttttttccattgctctatatatctgttttggtaccagtaccatgctgtttttgttactgtagacctgtagtatagattgaagtcaggtagtgtgatacctgcagcttttctctttttgtgta-ggattttcttgcctatgcaggctgttttttggttccatgtgaacttcaaagtag-ttttttccaattctgtgaagaaagtcagtggtagcttgatggggatagcattgaatctgtaagttatcttgggcagcatggtcattttcatgatattgattcttcctttccaggagcatggaatgttcttccatttgtttgtgtccgcttttatttcatggagcagtggtttgtagttctccttgaaaatgtccttcacatcccttgtaagttggattcctaggtattttattctctttgtagcaattgttgagtgggagttcactcataatttggctctctgttcatctgttattggtgtatggaaatacttgtgatttttgcacattattttgtatcctgagactttgctgaagttgcttatcagatttaaggagattttgggctgagacaatggggttttctaaatatacaatcatgtcatctgcaaacagagacaatttggcttcctctttttcctaatcgaatgtcctttatttctttctcttgcctgatggccctggccagaacttccaatactatgttgagtgggagtggtgagagagggcatcgttgtcttgtgctggttttcaaagggaatgcttccaggttttgcccattctgcatgatattggctgtgggtttgtcataaatagctcttattattttcagatgtgttccatcaatacctagtttatttagagtttttatcatgaaaggctgttgagttttgttgaaggccttttctgcatctattgagatagtcatgagatttttgtcattggttctgtttatgtgatgaattatgtttattgatttgcatatgttgaaccaggcttgcatcccagggatgaagctgaattgatcgtggtgggtaagcttttggatgtgctgctggatttggtttgtcagcattttattgaggatgtttgcattgatgttcatca-gggatattgtttttttgttgtgcttctgccaggctttggtatcaggatgatgctgacctcataaaatgagttaaggaag-attccctctttttct-cttga-ttcgaatagtttcagaagggatggtagcagctcctctttgtacctctggtagaattccgttgtgaattcgtctggtcatggactttttttggttcataagctattaattattgcctcaatttcagaacctgctattggtctactcagagattcaacttcttcctcgtttagtcttggaggtgtggatgtttccaggaatttatcaatttcttctaggttttccactttatttccgtagaggtgtttatagtattctctgatggtagtttgtatttctgtgggtttcgtggtgatatcccctttgtcgttttttattgcgtctctttgattcttctctcttttctcctttatttgtcttactagtggtctatctattttgttaatcttttcaaaaaaccggc-tcctgggttgattga-ttttttgaagtgttttctgtaacattcaattttttttaattctgttaaaaaatttttttccttatatttatttttaggacaatgttttatgagcttttgacaagactgtgagttttgttgttgtgtagagtgatctctatgcatctgttacatctaactgttttacagtattttcatgtcctctgttttcttcttaacattctctctggctttattattaattacagaactggtgtattaaaatattgttctcagtatattgcagttttttgtttatgttctgacaaaatattattgatttattttaaaatcttcatgtgaggttcatatatatGTGTGTCtgtatacataattagataaatacacacaattatataaatgtatattatataaatgtatataATTTTCCTAGGTTTC s panTro1.chrUn_random 63321783 3764 + 240967748 ttttattagtctaattgtctgtctttatgccagtaatataagattttgattactgtagatttctaacatgtcttgaaatcaggaattgtaatgcttccaactttttttatgtggtcccctgaaattccgtatactttggggagtcacattctctgtttctgtcaaaaataatattaagaatttcatagggattgtattaaatcttcagctcactttgggcattatagatacgttcaaaatattaaatttttaactcttgaacaaaaacatgttgaagaataaattgtttaattatcatgtatttgtgaattttatgaattttattcggttattgatttctagttttaatccattttggtcagaaattatggtttgtaaccttcaatttttattacactttaagttctaggatacatgtgcagaacgtacaggtttgttacacaggtatacatgatgtcatgttgatttggctgcacccatcaacttcatcatttacattaagtgttcctcctaatgctatccctttcatagccccccacccccaaacaggcactagcgtttgatgttccctgtcctgtgtccacgtgttctcattgtttaactcctacctatgactgaaaacatgcagtgtttgtttttctgtccttgtgatagtttgctgagaatgatggtttccagcttcatccatttccctgcaaatgacatgaactcatcctcttttaaggctgcgtagtattccatggtgtatatgtgtcacaatttcttaatccagtctatcattgatggatatttgggttgggttccaagactttgctattctgaacagtgcccacaataaacatacgtgtgcatgtgtctttatagtagcatgatttataatcctttggatatatacccagtaatggggattgctggggtcaaatggtatttctggttgtagatacatgaggaattaccacactgtcttccacagtgtttgaactaatttacactccaacccacagtgtaaaagcattt---tttttccacgtcctctccagcatctgttgtttcctgacattttaatgatcccccattctaactagcgtaagatggtatctcatgtgtggttttcatttgcatttctctgatgaccagtgatgatgagcaatttttcatgtctgttggttacataaatgtctgcttttgagaagtgtctgttcatatcctttgcccactttttgatgggattgctcatttttttcttgtaaatttgtttaaattatttgtagattctggatgtgagtcctttgtcagatgggtagattccaaaaattttctcccattctgtaggttgcctgttcactctaatgatagtttcgtttgctgtgtagaagcttttaagtttaattagatttcatttgtatattttggcttttgttgctattgtttttggtgttttagtcatgaagtctttgcccatgcctatgtcctgaatggtattgcccaggttttctcttaggtttttatggttttgggtcttacatttaagtctttaatccatcttgagtcaatttatgtatagggtgtaaggaagaaatccagtttcagttttctgcatatggctcgccatttttcccagcaacatttattaaataaggaatcctttccccattgtttgtttttgtcacatttgtccaagatccaatggttgtagatgtgtggtggtatttctgaggcctctgtttttttccattgatctatatatctgttttggtaccagtaccgtgctgttttggttactgtagacctgtagtatagattgaagtcaggtagtgtgatacctccagcttttctctttttgcgtagggattttcttgcctatgcaggctgttttttggttccatgtgaacttcaaagtagtttttttccaattctgtgaagaaagtcagtggtagcttgatggggatagcattgaatctgtaagttatcttgggcagcatggtcattttcatgatattgattcttcctttccaggagcatggaatgttcttccatttgtttgtgtcctcttttatttcatggagcagtggtttgtagttctccttgaaaatgcccttcacatcccttgtaagttggattcctaggtattttattctctttgtagcaattgttgagtgggagttcactcataatttggctctctgttcgtctgttattggtgtatggaaatacttgtgatttttgcacattattttgtatcctgagactttgctgaagttgcttatcagatttaaggagattttgggctgagacaatggggttttctaaatatacaatcatgtcatctgcaaacagagacaatttggcttcctctttttcctaatcgaatgtcctttatttgtttctcttgcctgatggccctggccagaatttccaatactatgttgagtgggagtggtgagagagggcatcgttgtcttgtgctggttttcaaagggaatgcttccaggttttgcccattctgcatgatattggctgtgggtttgtcataaatagctcttattattttcagatatgttccatcaatacctagtttatttagagtttttatcatgaaaggctgttgagttttgttgaaggccttttctgcatctattgagatagtcatgagatttttgtcattggttctgtttatgtgatgaattatgtttattgatttgcatatgttgaaccaggcttgcatcccagggatgaagctgaattgatcgtggtggataagcttttggatgtgctgctggatttggtttgtcagtattttattgaggatgtttgcattgatgttcatcaggggatattgtttttttgttgtgtctctgccaggctttggtatcaggaggatgctgacctcataaaatgagttaaggaagaattccctctttttctatttgatttcgaatattttcagaagggatggtagcagctcctctttgtacctctggtagaattcagttgtgaattcgtctggtcctggactttttttggttcgtaagctattaattattgcctcaatttcagaacctgctactggtctactcagagattcaacttcttcctcgtttagtcttggaggtgtggatgtttccaggaatttatcaatttcttctaggttttccagtttatttccgtagaggtgtttatagtattctctgatggtagtttgtatttctgtgggtttggtggtgatatcccctttgtcgttttttattgtgtctctttgattcttctctcttttcttctttatttgtcttaatagccatctatctattttgttaatcttttcaaaaaaccggctttctgtgttgattgatttttttgaagtgttttctgtaacattcaatttttttaaattctgttaaaaattttttttccttatatttatttttaggacaaagttttatgagcttttgacaagactgtgagttttgttgttgtgtagagtgatctctatgcatctgttacatctaactgttttacagtattttcatgtcctctgttttctttttaacattctctctggctttattattaattacagaactggtgtattaaaatATTGTTCTCAGTATATTGCAGTTTTTTGTTTATGTTCTGACAAAATATTATTGATTTATTTTAAAATCTTCATGTGAGGTTCatatatatgtgtgtctgtatacataattagataaatacacacagttatataaatgtatattatataaatgtatataATTTTCCTAGGTTTC a score=-114.0 s hg17.chr7_random 168479 1 + 778964 t s fr1.chrUn 299302461 1 - 349519338 G a score=12738.0 s hg17.chr7_random 172228 136 + 778964 CAGTGAATAAACTTTTTTATTATTTTGTCCTTTGTTTTCTTTGACAGTTTTAACTTATAATTTATTTTA---TAAACTAAGACAGTTATTTAAAAAGTATTTTGCAT-AATGTGCTCGTGACGTTGTCTTCATTT--CATTA s panTro1.chrUn_random 63325547 137 + 240967748 CAGTGAATAAACTTTTTTATTATTTTGTCCTTTGTTTTCTTTGACAGTTTTAACTTATAGTTTATTTTA---TAAACTAAGACAGTTATTTAAAAAGTATTTTGCATAAATGTGCTTGTGACGTTGTCTTCATTT--CATTA s fr1.chrUn 299302474 118 - 349519338 AAAAGAAAGAACCCTTTGTTCAGTCTGTCA-----------AGGCCGTTTTAAGACAGAATCCTTTTTAATTTAATCATAAAC-----TCCAGACGATATTT--------TGTGCCCGCACCAGTGTTTTTCTTTGCCATTA a score=895511.0 s hg17.chr7_random 172364 10011 + 778964 CGATTTGCATAAAATTGTTTTGATGCATCTTGCCACTTTTAGTCTGTTTTTGTTACTATATAGTAAgatggctcatatctgtcatccgagcattttaggagattgaggtgggaggttaacttgagcccagaagtttgagaccagcctgggaaacaaagcaataccatgtctctaaaataaataaataaataaataaatTGAATCCCCTGTAGACAGATGTAGTTAGATTTTATTTTATTTTTTATCTCTGTACTCTATTTATGACTTTTGTTTGAGAAGTTTAGTTTGTGAGTAGCTACATAATTTCCTGCATTTGAAGGAATTACTTTTGACACTTTTtggagtaaaaggtaaatattaaatttgaactaaattggaca-tggactcaaacaatggtcaccaagtcccggaacaggttgtgtgagccccttgaagccctcatccagcgctgtttcagataaatctctatttcaatttattcctatatcttagttattgaaaaacaatagacaatcaaaaaaacaagttgacctttttgtgttccttgagccccgttgtgaatagccttcctgaccggacttcatgccaaataactcattacaaaaagagctggggttccagactgcgccaaagcttcatgagatctcacgttgtctgtggacggatgagtggccaatctggagcccaggctgttgcttcacagtcttgtggtgaatcctccatagtttggtgagtttaaatatatatatatatcttttcccttctccccgtcccattgcaacttgcttatatatttgcttattatatctgcattgccatttaagtgggataaagtttgtttgaatcactggctgtgcgtgaggtgcagcagggagtcccagttggtaattgtaatgctgagggaatttcccagcattgatgatgcttgcttacttcttataagttaaagtgtcaatgtagggactggttgttacaagagaaatgtaagctggaaaaggaaaattttaatctgacttccagactgaccctggtaccatgccaggcctgtcttgactgatcaggctcaaagctatcagcctattgctgaaaaagcagctgtccgagttgcccagtcagggtaaaactgaataactagtcagttttcagggc-agaagagggtaaaaacccaaatcctatctcaaggatgggaagttaactctaataaaattcaatggcctgcacaaagtgtaaagttccttggcatcctatggactgcagggaaacagtccattttaccaaaggctaacgctaaaatactagaatttgcagccctaccactgaaaaggaggtccaaaattgtattggcttgtttggattctggagacatcatattccccacttgggtaacatattacaacctctgcatgcagtcactagaaaacactatgaatatcactggagagagaaagacagcctggcttttcaacaagcaaaacaagctgagcaactggccctggatctatggcccttataggatgagtcaacagaactgcaagtaactgtcctacatcaacatgctaattggagccttaggtagaaacaagatgggaagaagatacctttggagttttagacccagaagctgccagaggctggcaaagcttatactctttgagaagcagctgttggccttctactgcgcttga-aggaagcagaacacctttgttttaatcatgatgtttttatgaggccccaaattcctattatgacttgggtcatgagctccctcaaaacccattggatagggtacactcaagaatgtagtatcataaaatggaaatggtacatacaagaccaggataagccagaactaaaagcggtatcatttttacttgaagatgtgcaaaacttgccaactcaggaaaccacagggcaagtcctgcatatagggaaggaaacctcccctgcccaatggggcaaatcctttaaagaa-ctaagcccagaggatcagaaacacgctt-ggttactgatagttccaccaaatacattgatgggacctgatgctgggaggccgtggcttataatcctgttaaaaacataagcgtttctgatgaagggaggggtgtgagcagccagctggctgaactag-aagccatcctccgaact-attcaggaggaggccagagcaatttgttgcttgtataccgactgttggtcagcagaaaatggtcttactacctagttgcccgaatggcaatgaaacaaatagtgaataatgaataaagaggtttggagaaaacaatactaggaagatacctgaatcctgatgcacattactattattgctgtttttcatattgattctcatgcatctctgcattctcttgacagactaaacagcaggtagatcaacaggccaaaatttccagcataaatgcaaacttgaatgtgggtgaatggattacaacacattcaagcctggcgatgagacacattataatgtatggtggtataattgataatgattaccaggaacagttaaagttcactttacacaataccactccacattcttttgttacaagaccgcagattcgggttgctcaattgtcagtggtacctggtaccttgttaacaattaacccctgaggaaatctctgccccaacagaggctacgtacagaactgggaaattaagatccactggtataggtagcttaaatcctggaacgaaaatatggatacagcctccatcagatcccgcccctaaggct-gtgaccttgtaggtatgggagcagaaaataaaagggtagtacagtttcctaaaaatgaaaaacaatattatgttccccttcagttt-tgttgttacagagaataacctgtctactagtaatcagtacctgggtcatcaggtctgaggtggagagtgaattcatcaactgggcagcaaccactgcgacagaagctaaccgcagtcaatgctggctatgcatcaaattgccagaggccacaggaaatggactgccttgcagagttgtccttgccaatatttctgaatggctctgtcactacaaatggggccaaaacaacaacacttgcaatccaacctggacttcctttgctactttaataacatcttaatacactataattgtagtataaccattgctgtcccctggggggccctctgggtatgcagaccctatgggtggcctatctgcccccttattggatggggagattcacttgggggtgccattaattccattcaccatccgggataatattcccttccccaataatctagatgcttacaaaggtagctggttatgaacgtgccagactccctggtggtggaaaactatcacagtattctcccttgcccctcgtacaatcctgcttcagcaacaaattaaaatattaagtccacatatagtaaaagctcctaagatagtagcactggacttctgttgttatcagaagaacttgttcagctgtgtactgttgtgttgcaaaatcgaatggcattaggtatgtttaccgcagcccaaggaggggtttgagtcttgctgcattctgaatgttgtgtgtatccctgacagttctcgcagtattactctccttgccgaagacatgcaaggacaagtaaaacagttagaatctaaccatcaggaccccatcatggactggctgtcaaactagcattggcgttggccgtggtgggtgtggtttctattaattgtgcttttaattctcctctgctctatctgtaatctataccagttgtgacttccccgtataactgtaaaaatattttcctatgattcagtgtcaaattgaggctgaatgaggaggaaaagttaaatattaaatttgaactcaatgaacatggacagaaacaatggtcactaagtcctggaacaggttgtgtgaaccccttgtggaattcatccagcactgtttctgagaaatagttattgaaaaacaacagaaaatcgcaaaaacaagtaggccttttcgttttccttgagtccagtcacgaagggcccttgtgagtgggcctcatgccgaacaaatcgttacaaaaaaagctatggtcccagactgtgctgaagcttaatgagacctctccttgtctgtgcaggggtgggtggctgactctggagtccaggctgacgctttcctataggcaaagctcagggaacagaggagagtcacatcaaatagttgatgagtcaagagatatgtcacagggactcctgtatgcagg-gtccagacaggaaatccacatcgttttggtgctgagcccagcaatatattacaatgtcttctgagggaagaaccaaggc-aaaaaattaatgtcactttggtgttaagcccagtgatacatcacaatttccactgcaggaagaacctaggcagaagagaatagttacatcagctagatggtgcccccattgatatgtcacaatgtccacttgaaca-ggaatcagtcagcagaagcaagtcacatcacctgagtgatgggtgcagagataagtcacaatgtcccctgtaggcagagcacggaaaggagagctgcataacctgggtgttggacccagcaatatagcttatatggtagacccctggcagaaaaattacaaaacatgggGCCAGCACCAAGTatatgttataatgtcccctgtgagcagcaccaaggcaggacaggagactcgcatcacttggttgctaagacaagtgatctgctacaatcttctttgtaggcagggtgcacacactttttttaggtggtgaatgcagagagatgtcccaaggccccctgtgaacagggctcaggcagtagccatcaattccctaggtattatgcccagcagtatgtcacaatatacaaaatatgcagggcccagggaaaagaggagagtcacatcatgtgggtgcttgtcccagtgatttgtcacaatctctctttttgacaggacccaggcagaagaggggggtcataggtgctgggttcaataatgtcacaattttatcatgggctgggctacgcagaagagtcaagtcactcacgagctgggccgagatatatttcacagttatacctccaggaaagtccagggctgagactgacaatcCTGCACATGTCCCATATCTAGGTGTGAGAGCAAACACATTGTGTTTGTTGGGTGTAAGTGTACAagtcacagtctcaatggtgcactggatctgtgcatggcagcttcagtctttcccgaggaccgtggccccttaatggagtcacagcgt-cacgtgtttgctgaat-gttgg-ttttagagtcactgactcaaacatggatcgcatcc-acttatgagagtcaattattcatc-tctcaaccgcctccaggtgtg-agatttggaacctcaa-cagtgggctgtgttcatgtg-aaaagatgacaatttttactcttggctcagagtagatatgagtg-tcacaatctacttttgttctgggccctgtcaggacactctcttcaccatatgaagcctttatagagtatgcatgaatgtaacaattctccctgaaaccttaagcaggca----------cggacccctccttgtgcctttagctttaagccctggtatgacagtcaacatctttctacttggatgggtccaaataagagttcttaactgcctatgagctgcgtttaaaaatgagtcaccatcccacctgtggctggatgttcacatatgaaagtcagaatcccagttgtggactatgtctgcatgtgtaattcaggacctcaagagtgggctctctccacgtgtgatagagaccatcctgaatattggtgtggtgtgaatctgagaagtataatctcaccagtgtgctgagccctttggtgacaatttctctaccatagtttacacaatatgcatgacagtggtactcctccgtgtgacgtatcactgggtcttgcacacaggtaatgtgagtctcctctcctgccttggaatgctcacaggaggcattgggacataccactgaagctgatattcaggttatgtgcctgtctttcctgtgctctgtccatgggcttttgtgacatatttctgggtccaaaacacaggtgacataactctcctgtctgaactctgcctacagagggcatggtggcatatctctgcaccagccactagatgatgtgactctatcttctgtctagtctctgcctacagggtgaattgtgacttatcacccggcgcagcatttagctaatgtgactcttcccttttttcaggttctgccctcgggggagattgtgacatatcTATTTGTAAAACaccaaaatgattttactcttttgtcttggctctgccctcagaaggctttgggatatattgctgaacaagcaccaaggtaatgtgattgtcctacctgaaccctgcccacagggagcattgtaacatatctctgagcccatgaactatttgatatggctctattctcttacctgggctttgcccatgagaaagattgtgaagtatttcttgatccagtgcttaggtaatgtgattctcctctccagcctgagacatgcccacagaagtaagagtgacatctctgggcctagcccacaggtgatgtgaaccttatcccttgtttctgcccaggggagtcattgtgatgtatatctgagaccattattagaatgatgtgactctcctgttcttactgcgacctgtccacagtggggatgatgatgtatcacttaggccagcacatatgaggtgaga--ttcttctcatgcctgtgccctgccccctgggctaattgtgacatataactgggcccctcccctaggttatgcaacatatccctgtgataacactctttgtaccatttaagagctttatataatatgagagagttgtattcctctaagtccttcatacaaaaggaagagttaagacctaccggttttccaaagcctccctatgaaaaacagcatttctcttagtggcaggtttgaggtatgagagtcattattacacctgtgagctggccaagatatatgtttcaatctcttctgtgggtagggagtgagcaggagagtcacgtcaccgggatgcttggcctgagatctgtcaatatcttccctgatggcagggaacaggtagga-gagtcacatacctaa-ggctgggcca-gggatatgtaacaatgttttctgaggtcagaggctaggaggggagtcccatcacttgtgtgctcacaggggatatgttacaatcccctcctgaaatcagagtacaagcagcagagtcaaatcacctgaatattgagctcagtgatatgtcaccacactccctgtgggcaagaccatagcaggagagaaacatcacctgattactgattactgggcccagtgatatgtcagaatctttcctgtgggcaaggtgcaggcagaaaggagagtcacatcatctggtgttggaagcagaaatatgctacaaggctcactgtggacagagttcaggcaggagcctctaatctcctaggtgttaagttcagtgatacgttacaatgctccctgtgggcagcacgaaggcaagagaatagagccacatcacctatgttctaggtccaatgatatgtcccaattttatttgtgagctgggcttaaacagaagagtctaatcactcaggtgctggacaaatgtgtatgcttgtcacaatgacacctgcaggaaagtccagatatgggatgaatcccgcacatattctggttttacgcatgagagtgaacaccttctgtatgtttgatctaagtacacaagtcactatctcaatagtggACTAAATTTGTGCATGGCAGCCCCATTTTCTCTTGCGTACTTTGTCCCCT-AATTGAAATCACAGCTTCCTAGGTGTGCTGACTCATGATCTGAGAGTCATCAACACATCTGTGACTCTCAAATATGAGAGTCAATTTTTCAACTTGTCAATCTGCCTTTGGGtatgggattcagagcctcaaaagtgaactatgatcatgtgaaagaacgacaatctttaatgttggctgggtgtgcatcccaatgtcattatattactgtgtgctgagccctattaggactttctgtgttgcacctgacggctttatgttgtatgcatgacagtctcaattctttcagagattttcatgctggtatggacccatgatcaaacctgtggccctaagcc--tatatgagtcaacatctttacaattggcggggtccagataagagaatcatcagctttctatgcgctgggtttataacaaagttcccattccaactctggccagatctttacatatgagattcgcaattccaactataaactgcattcatgtgtgaaattcaggacctcaccagtgggttctgtttatatgtgagggtgaaaatcataatggtcaggagggttcagggtgcgcataggagtaacaaatttcacctgtgtgctgggccctgtgataagactctctaccacccgagggctttctgtaatatgtgagagagtggatgatcttagcgaggagacctagggttttttttcatttccctaagtgtagctaggagaagcagtatctcttctattggctggtttgacatatgaatgtcatcattgcacctgtgtgttgtgttccaagatatatgtcacaattacacctgcatataggaagagagcaggagagtaaaatcagttggacgctgggccagtgatatgtcgcttccctgaggaca-gggaccaggcaacagtcacattacctgaatgttcaggcattggtatgttggaatccactcctcacattaggaaccaggcagcagagacacatcacctgcatgctggatctagcaatatttcacaatcctctctgtgttcaggatgcaggcagaagagtcacatcttcttggtgatgaatgtagaaatatgtcacaagcttcactgcacgtaaggtagaggaataaaccttttattccctaagtgttgggcccagggatatgtcacaatacccaaaatatgcaaacccaggcaaaagagaacagtcacattaccttggtggtagggtcactgatatgtcacaatcctctgttttggaagggcccaggtaagagtggagagtcacatcgcctaggcaatgaatagaagagtatgtcataatacccctgttggcgagacctatgcagaagagtcacatcacctatgtgttcaacccagatatatgttactgtacaccatgtatgcagggcccaggcaagagaaaaggccacatcacctcggttctgggcccagcaatatatcacaattccccctaagaggaggtaacagacagcagagtcacatcacctaggtctgaggagcagagctatatggtagtgccctgtgtgtgtgggcccaaaaatagaggagagttacatcacctgaagactgtacccagctataagtttcaatcacccctgtgggcagcacccaagcatgagaagagagtaccatcatgtaggtgctgtgccaggctgtatttcacaatctccactatggataggtttcagggggaagaggagcattacattatctagttgatgagtctagagatatgtcaaaatgacccctctggagacaccaggttgcagaatcacatgacctgtgtgctgggtctaggaataacccactctcccttctgtaaacatggccacggcagaagatgagggtcacatatttaaggtgatgaacgcggaaagatttcacaaggctccctgtaggcaagacccaggcaggactttcccttccctcagttgttgggaggagaaatacatcacaatgtggggctcaagcagaaaacaaaagaaatatcccctattttctgggctcagaattatgtcacaatctctcctatgggcaaagcctttgttaaaaaaggagaatcttgtcaaatagttgatgggctcagagatatgtcccaatgccatatgttacaaattgctgtaggcaggcttcaggcaggagactcaccttggt-g s panTro1.chrUn_random 63325684 10042 + 240967748 CGATTTGCATAAAATTGTTTTGATGCATCTTGCCACTTTTAGTCTGTTTTTGTTACTATATAGTAAgatggctcatatctgtcatccaagcattttaggagattgaggttggaggttaacttgagcccagaagtttgagaccagcctgggaaacaaagcaataccatgtctctaaaataaataaaaaaataaataaatTGAATCCCCTGTAGACAGATGTAGTTAGATTTTATTTTATTTTTTATCTCTGTACTCAATTTATGACTTTTGTTTGAGAAGTTTAGTTTGTGAGTAGCTACATAATTTCCTGCATTTGAAGGAATTACTTTTGACACTTtgtgaagtaaaaggtaaatattaaatttgaactcaattgaacagtggactcaaacaatggtcaccaagtcccggaacaggttgtgtgagccccttgaagccttcatccagcgctgtttcagataaatctctatttcaatttattcctatatcttagttattgaaaaacaatagacaatcaaaaaaacaagttgacctttttgtgttccttgagccccgttgtgaagagccttcctgaccggacttcatgccaaataactcattacaaaaagagctggggttccagactgcgccaaagcttcatgagatctcacgtcgtctgggcacggaagagtggccaatctggagcccaggctgttgcttcacagtctggtggtgaatcctccatagtttggtgagtgtaaatatatatatatatcttttcccttctccccgtcccattgcaacttgcttatatatttgcttattatatctgcattgccatttaagtgggataaagtttgtttgaatcactggctgtgcgtgaggtgcagcagggagtccctgttggtaattggaatgctgagggaatttcccagcattgatgatgcttgcttactgcttataagttaaagtgtcaatatagggactggttgctacaagagaaatgtaagctggaaaaggaaaattttaatctgacttccagactggccctggtaccatgccaggcctgtcttgactgattaggctcaaagctatcagcctgttgctgaaaaaacagctgtccgagtggcccagtcagggtaaaactgaatacctagtcagttttcagggcttgaagagggtaaaaacccaaatcctatctcaacgatgggaagttaactctaataaaattcaatggcctgcacaaagtgtaaagttccttggcatcctatggactgcagggaaacagtccattttaccaaaggctaacgctaaaatactagaatttgcagccctaccactgaaaaggaggtccaaaattgtattggcttgtttggattctggagacatcatattccccacttgggtaacatattacaacctctgcatgaagtcactagaaaacactatgaatatcactggagagagaaagacagcctggcttttcaacaagcaaaacaagcggagcaactggccctggatctatggcccttataggatgagtcaacagaactgcaagtaactgtcctacatcaacatgctaattggagccttaggtagaagcaagatgggaaaaagatacctttggagttttagacccagaagctgccagaggctggcaaagcttatactctttgagaagcagctgttggcctgctactgtgctttacaggaagcagaacacctttgttttaatcatgatgtttttatgatgccccaaattcctattatgacttgggtcatgagctccctcaaaacccattggatagggtacactcaagaatgtagtatcataaaatggaaatggtacatacaagaccaggataagccagaactaaaaggggtatcatttttacatgaagatgtgcaaaacttgccaactcaggaaaccacagggcaagtcctgcagatagggaaggaaacctcccctgcccaatggggcaaatcctttaaagaagctaagcccagaggatcagaaacacgcttgggttactgatggttccaccaaatacattgatgggacccgatgctgggaggccgtggcttataatcctgttaaaaacataagcatttctgaggaagggaggggtgtgagcagccagctggctgaactagaaagccatcctccgaactaattcaggaggaggccagagcgatttgttgcttgtataccgactgttggtcagcagaaaatggtcttactacctagttgcccgaatggcaatgaaacaaatggtgaataatgaatacagaggtttggagaaaacaatactaggaagatacctgaatcctgatgcacattactattattgctgtttttcatatcgattctcatgcatctctgcattctcttgacagactaaacagcaggtagatcaacaggccaaaatttccagcataaatgcaaacttgaatgtgggtgaatggattacaacacgttcaagcctggcaatgagacacattataatgtatggtggtataattgataatgattaccgggaagagttaaagttcactttacacaacaccactccacattcttttgttacaagactgcagatttgggttgctcaattgtcagtggtacctggtaccttgttaacaattaacccctgaggaaatctctgccccaacagaggctacgtacagaactgggaaattaagatccactggtataggtagcttaaatcctgaagcgaaaatatggatacagcctccatcagatcctgcccctaaggctggtgaccttgtagctatgggagcagaaaataaaagggtagtacaatttcctaaaaatgaaaaacaatatcatgttccccttcagtttgtgttgttacagagaataacctgtctactagtaatcagtacctgggtcatcatgtctgaggtggagagtgaattcatcaactgggcagcaaccactgcaacagaagccaaccgcagtcaatgctggctatgcatcaaattgccagaggccacaggaaatggactgccttggagagttgtccttgccaatatttctgaatggctctgtcactacaaatggggccaaaacaacaacacttgcaatccaacctggacttcctttgctactttaataacatcttaatacactataattgtagtttaaccattgctgtcccctggggggccctctgggtatgcagacgctatgggtggcctacctgcccccttattggatggggagattcacttgggggtgccattaattccattcaccatccgggataatattcccttccccaataatctagatgcttacaaaggtagctggttatgaacgtgccagactccctggtggtggaaacctatcacagtattctcccttgccccttgtacaatcctgcttcagcaacaaattaaaatattaagtctacatatagaaaaagctcctaagatagtagcactggacttctgttgttatcagaagaacttgttcagctgtgtac--ttgtgttgcaaaatcgaatggcattaggtatgtttaccgcagcccaaggaggggtttgagtcttgctgcattctgaatgttgtgtgtatccctgacagttctcacagtattactctccttgccgaagacatgcaaggacaagtaaaacagttagaatctaaccatcaggaccccaacgtggactggctgtcaaactggcattggcgttggccatggtgggtgtggtttctattaattgtgcttttaattctcctctgctctatctgtaatctataccagttgtgccttccccgtataactgtaaaaatattttcctatgattcagtgtcaaattgaggctgaatgaggaggaaaagttaaatattaaatttgaactcaatgaacatggacagaaacaatggtcactaagtcctggaacaggttgtgtgaaccccttgtggaattcatccagcactgtttctgagaaatagttattgaaaaacaacagaaaatcgcaaaaacaagttggccttttcgttttccttgagtccagtcacgaagggcccttgtgagtgggcctcatgccgaacaaatcgttacaaaaaaagctatggtcccagactgtgctgaagcttaatgagacctctccttgtctgtgcaggggtgggtggctgactctggagcccaggctgatgctttcctataggcaaagctcagggaacagagaagagtcacatcaaatagttgatgagtcaagagatatgtcacagggactcctgtatgcaggagtccagacaggaaatccacatcgttttggtgctgagcccagcaatatattacaatgtcttctgagggaagaaccaaggcaaaaaaattaatgtcactttggtgttaagcccagtgatacatcacaatttccactgcaggaagaacctaggcagaaaagaatagttacatcagctagatggttcccccattgatatgtcacaatctccac-tgaacagggaatcagtcagcagaagcaagtcacatcacttgagtgatgggtacagagataagtcacaatgtcccctgtaggcagagcacagaaaggagagctgcataacctgggtgttggacccagcaatatagcttatttggtagacccctggcagaaaaattacaacacgtgggtgcagcaccaag--tatgttataatgtcccctgtgggcagcaccaaggcaggacaggagactcacatcacttggttgctaggacaagtgatctgctacaatcttcttcgtaggcagggtgcacacactttttctaggtggtgaatgcagagagatgtcacaaagccccctgtgaacagggctcaggcagtagccatcaattccctaggtattatgcccagcagtatgttacaatatacaaaatatgcagggcccaggcaaaagaggagagtcacatcatgtgggtgcttgtcccagtgatttgtcacaatctctctttttgacaagacccaagcagaagaggagggtcataggtgctgggttcaataatgtcagaattttatcatgggctgggctacgcagaagagtcaagtcactcacgagctgggccgagatatatttcacagttacacctccaggaaagtccaggGTTGAGACTGACAATCCTGCACGTGTCCCATATCTAGGTGTGAGAGCAAACACATTCTGTTTGTTGGGTCTAAGTGTACAAGTCACAGCCTCAATGGTGCACTGGATCTGTGCATGGCAGCTTCAGTCTTTCCCGAGGACCGTGGCCCCTTAATGGAGTCACAGCCTCCACGTGTTTGCTGAATGGTTGGTTTTTAGAGTCACTGACTCAAACATGGATCGCATCTAACTTATGAGAGTCAATTGTTCATCTTCTCAACTGCCTCCAGGtgtgtagatttggaacctcaaccagtgggctgtgttcatgtgaaaaagatgacaatttttactcttggctcatagtagatatgagtgatcacaatctgtttttgttctaggccctgtcaggacactctcttcaccacatgaagtctttataaagtatgcatgaatgtaaaaatcctctctgaaaccttaagcaggcacctccttaagcggaaccctccttgtacctttagctttaagccctggtatgacagtcaacatctttctaattggatgggtccaaataagagttcttaactgcctatgagctgtgtttaaaaatgagtcaccatcccacctgtggctggatgttcacatatgaaagtcacaatcccaactgtggactgtgtctgcatgtgtaattcaggacctcaagagtgggctctctccacgtgtgatagagaccatcctgaatattggtggggtgtgcatctgagaagcataatctcaccagtgtggtgagccctgtggtgacaatttctctaccatagtttacacaatatgcatgacagtggtactcctccttgtgacatatcactgggtcttgcacacaggtaatgtgagtctcctctcctgccttggaatgctcacaggaggcattgggacataccactgaacctgatattcaggttatgtgactgtctttcctgtgctctgtccatgggcttttgtgacatatttctgggtccaaaacacaggtgacataactctcctgtctgaactctgcctagagagggcatggtggcatatctctgcaccagccactagatgatgtgactctatcttctgcctagtgtctgcctacagggtgaattgtgacttatcacccagtgcagcatttagctaatgtgactcttcccttttttcaggttctgccctcggggtagattgtgacatatcgATTTGTAAAACaccaaaatgattttactcttttgtcttggctctgccatcagaaggctttgggatatattgctgaagaagcaccaaggtaatgtgattgtcctacctgaaccctgcccacagggagcattgtgacatatctctgagcccatgaactatttgatatggctctattctcttacctgggctttgcccatgagaaagattgtgaagtatttcttgatccagtgcttaagtaatgtgattctcctctccagcctgagacatgcccacagaagtaagagtgacatctctgggcctagcccacaggtgatgtgaatcttatcccttgtttctgcccaggggagtcattgtgatgtatctctgagaccattattagaatgatgtgactgttctgttcttactgcgacctgtccacagtggggatgatgatgtatcacttaggccagcacatatgtggtgagactctcttctcatgcctgtgccctgccctctgggctaattgtgatatataactgggcccCTCCCATAGGTTATGCAACATATccctgtgataacactc----taccatttaagagctttatataatatgagagagttgtattcctctaagaccttcatacaaaaggaagacttaagacctaccagttttccaaagcctccctatgaaaaacagcatttctcttagtggcagatttgaggtatgagagtcattattacacctgtgagctggccaagatatatgtttcaatctgtcctgtgggtagggagtgagcaggagagtcacgtcaccaggatgcttggcctgagatctgtcaatatcttccctgatggcagggaacaggtaggaggggtcacatacctaagggctgggccaggggatatgtaacaatgttttctgaggtcagaggctaggaggggagtcccatcacttgtgtgctcacaggggatatgttacaatcccctcctgaaatcagagtacaagcagcagagtcaaatcacctgaatattgagctcagtgataagtcaccacactccctgagggcaaggccatagcaggagagaaacatcacctgattactgattactgggcccagtgatatgtcagaatctttcctgtgggcaaggtgcaggcagaaaggagagtcacatcatctggtgttggaagcagaaatatgctacaaggctcactgtggacagagttcaggcaggagcctctaatctcctaggtgttaagttcagtgatacgttacaatgctccctgtgggcagcacgaaggcaagagaatagagccacatcacctatgttctaggtctaatgatatgtcccaattttatttgtgagctgggcttaaacagaagagtctaatcactcaggtgctggacaaatgtgtatgcttgtcacaatgacacctgcaggaaagtccagatatgggatgaatcccgcacatattctggttttacgcatgagagtgaacaccttctgtatgtttgatctaagtacacaagtcactatctcaatagtggACTAAATTTGTGCATGGCAGCCCCATTTTCTCTTGCGTACTTTGTCCCCTAAATTGAAATCACAGCTTCCTAGGTGTGCTGACTCATGATCTGAGAGTCATCAACACATCTGTGACTCTCAAATATGAGAGTCAATTTTTCAACTTTTCAATCTGCCTTTGGGtatgggattcagagcctcaaaagtgaactaggatcatgtgaaagaacgacaatctttaatgttggctgggtgtgcatcccaatgtcattatattactgtgtgctgagccctattaggactttctgtgttgcacctgagggctttatgtggtatgcatgacagtctcaattctttcagagattttcatgctggtatggacccatgatcaaacctgtggccctaagcctatatatgagtcaacatctttacaattggcggggtacagataagagaatcatcacctttctatgagctgggtttataacgaagttcccattccaactgtggccagatctttacatatgagattcgcaattccaactgtaaactgcattcatgtgtgaaattcaggacctcaccagtgggttctgtttatatgtgagggtgaaaatcataatggtcaggagggtgcagggtgcgcatacgagtaataaatttcccccgtgtgctgggccctgtgataagactctctaccacccgaggactttctgtaatatgtgagagagtggatgattttagcgaggagacccagggctttttttcatttccctaagtgtagctaggagaagcagtatctcttctattggctggtttgacatatgaatgtcatcattgcacctgtgtgttgtgttccaagatatatgtcacaattacacctgcatataggaagagagcaggagagtaaaatcagttggacgctgggccagtgatatatggcttccctgaggacaggggaccaggcaacagtcacattacctgaatgttcaggcatcggtatgttgcaatccactcttcacattaggaaccaggcagcagagacacatcacctgcatgctggatctagcaatatgtcacaatcctctctgtggtcaggatgcaggcagaagtgtcaaatcttcttggtgatgaatgcagaaatatgtcacaagcttcactgcgtgtaaggtagaggaataaaccttttattccctaagtgttgggcccagggatatgtcacaatacccaaaatatgcaaacccagggaaaagagaacagtcacattaccttggtggtagggtcagtgatatctcacgatcccctcttttggaagggcccaggtaggagtggagagtcacatcgcctaggcaatgaatagaagagtatgtcataatacccctgttggcaagacctatgcagaagagtcacatcacctatgtgttcaacccagatatatgttactgtacaccatgtatgcagggcccaggcaagagaaaaggccacatcacctccgttctgggcccagcaatatatcacaataccccctaagaggaggtaacagacaggagagtcacatcacctaggtctgaggagcagagctatatggtagtgccctgtgtgtgtgggcccaaaaatagaggagagttacatcatctgaagactgtacccagctataagtctcaatcacccctgtgggcagcacccaagcgtgagaagagagtaccatcaggtaggtgctgtgccaggctgtatttcacaatctccactatggataggtttcagggggaagaggagcatcacattatctagttgatgagtctagagatatgtcaaaatgacccctctggagacaccagaatgcagaatcacatgacctgtgtgctgggtctaggaataacccattctcccttctgtaaacatggccac-gcagaagatgagggtcacatatttaaggtgataaatgcggaaagatttcacaaggctccctgtaggcaagacccaggcaggactttcccttccctcagttgttgggaggagaaatacatcacaatgtggggctcaagcagaaaacaaaagaaatatcacctattttctgggctcagaattatgtcaaaatctctcctatgggcaaagcctttgttaaaaaaggagaatcttgtcaaatagttgatgggctcagagatatgtcccaatgccatgtgttacaaattactgtaggcaggcttcaggcaggagactcaccttgttgg a score=344448.0 s hg17.chr7_random 182375 4098 + 778964 ttgggcccaataatgtgtcacagtgctttctgcttgcagagcaaagtcaacagagtaatgtcaccgagaagttggacccaccaatgtatcacaatctccttccaaacaaatcctaaaaaacaaaagaagagtaacatgagctaggtgctgggcacagtgatatgtcacaatcctttctttaagcagggactaggcaggagaagaaaatcacaccacatgggtgatgggctcatagatatttcacaatgtccccttaggcaaagctcaggaaggagagctaaatcatctaggttttggatgcaacaatatgtcaaaatggccattgtggactgggcacaggcagaagagtcacataacatggatgtgggacccagcaatacatcacaacacccctgtgagtagcactaatgcaagacagaaaacatacattacctaggtgcaaggccaagtgatatgtcccaatgtcccctgtgggcagcactaaggcaggagataagagtcacatcatctaggtgctggcttcagtgatatatcagaatcccatctgtgagctggacacaggaaacagagctaaaacactcaggagctgggcagagatgtatgtcacaatcccacctgCAGAAAGCGACAGGGATGAGATGAACAACTCCACACATGTCCGGATTCCAGGTATGAGAATTTGTATGTTTGGCCTAAGTACACCagtctcaatctcaacagtgaactggattcataaatgtgtcttctctggctga---------ccgtgtccccttaggagagttacagtctcacagatgtaatgaattttggtttgagactcacccacctacctgtggacaagatccatatatgagagtcaATTTTCtctttctttctttctttctttctttctttctttctttctttctttctttctttctttcctttctttctttcttctttcttctttcttttttctttctttctttttctttctttctttcttccttccttctttcttctttcttctttctttcttctttctttctctttctttcttctttaattctttcttttcctttctttctttctctttctttctttcttttccttccttccttccttccttccttccttcctttctctctctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttcttttGGTCCCttgagacggagtctcactctatcgccaggctggagtgcagtggggcgatctcggctctctgcaacctctgcctcctgggttcaagcaactctcttgcctcagcttcccgagtagctgggattgcaggtacgtgccacgacgctcagctaatttttgtatttttagtagagatggggtggccaggcacagtgtcccatgcctgtaatcccagcactttgggaggtcgaggtgggtggatcacctgaggtcaggagtttgagaccagcctaattaatatggtgaaaccccgtctccactaaaaatacaaaaattagctgggaatggtggcatgagcctgtagtccctgct-actcgggaagctgaaacaagagaattgtttgaaccagggag-gcggatgttgcagtaagcctagatggtgccactgcact-ccagtctgggtgacagagcaagactctgtctcaa------------------aaTAataatcataatcataatcataatcataatcataaATAGTAGagagacgtggtttcacca-tgttggccaggatggtcttgatc-tcctgatctcatgatctgtccgcctc-ggcttcccaaagtgctgcgattacaggcgtgagccactgagccATGCCggttgtacccatttttgaggatggtaacttttattgtcaccagagtgtgcatgagtgttagaatctcacctgtttgctgggccctgttaggacactatgtacctcctgtggaccttgtagagtatgcattaaacataatccactctgacgtcttcatgctgatatgaacctatgatcatacctgtggccataagtccaggtatgagagtcaacatctctccagctggctggatccagataagaggatctttacttggctgtaaactgggttcagaaataagtcactatcccaactgtgactggatgttcacatgtgatagttacaattccagctgtggacggcattcaggtatgaggtttagacctccctaatcacctctgttcctgtgtaggaatgacaattctgatgattggtgggtgtgcacacagagaacacaatctcacctgtgttctgggccctgtgatgacactgtaccatctgagtgctttataggatatgcaagagtgcttactttctctgaccttcatagtaagagaagacccataattttgcaagttttgttaagcctggctgtgagagaaagtatctctgctattggttggtttaaggtatgaatgtcatcatcacacctacatgctaggccaaaatatatgtgacaatctcac-atttgggtagtcagaagcaggagagtctcatcacctgggtctgtgtcagggacatgttgcagtcttccctgaggacagggacaaggcaagagagtcacatccctaagagttctgccagggatatgttcttgttctctcctgaaagcacgacacatgcagcagagtcacctcacctgggttctgggcccagtgatatgtcacaattttccctgtgaactaagcacaggcaggtgaaacacatcacctgtttgctgggcccagaagtatgctacaatttttcttgtgagcagggttcaggcagaaa---tgggggggatcatattttctaggtgataaatgcagagctatgtcacaaggccctcagtagtcagggtcttggcagaaacttcctattgactaggtgattggcccagtgatacatcacaatagctaaattatgtggggcccaaggcaaagaggagagttgcatcacctaagtGATGAACAAAAAgatacttcatagtacccatggggaaatggcccatgcaggtgagtcacattacctacgtgttggacccagtgatatgtcacaatacacaataaatgtaggatgcagccaagagcggatagtcaaatagctcaggtgctgggcccggtgatacattgt-aatctctctttggtcagagccctacagtagaagaaactcagttcacctcggtgctgaggtcatccatatgtcacaatacccctgagaaatgagcccaggcaaaga--------------gtgagaggcccacagatattttgcaatggctcctgtgggtagcgctctgtaaaaagacagtcacattacctagagtctgcccgcaacgatttgtaacaatccctgctataaacaggtagcagtcaggagaagtgagtcccatcacctgggtggtcagtgtagagatatgtcactatgccccctgtaggcaaagtctagacaagagttacatcacctgggtgttggacccagcaatatgtcacaatggctcatgtgggcaaagcacaggacagagtcacataacaaagtgccaggaccagtgttaggtcaggatacccattatgggcagtgccaagacaggagaatagaagcatattaattagatgctggattcagagatatatcacaatctcatctgtgggctacacccaggcaaaaatgtcaaatcactcaggtgctggctagaggtgtatgtcagaatcacacctgcaggaaggtccatggatgagattaacaatcccacataagttccggttctgggtatgagagtgaacgcctcctgtacgttgtatctatgtgcataagtcacaatctcaatggaggaatgggtTTTTTCCATGAGAGCCTTAATCCCTTTTGAAAACGGAGTTATCTTAGTGgactcacagcctcacaagtgttttggatcttggtcagggagtcacaaacccact---ggcagacaatatccacttttaagagccaattttccaacttttgactgcctctgggtgtgagtttcagaacctcaattatggtccatgttcatgtgggagaa--acaattttgacagatggctgggCTCAGGCAGGAGACTTTCATCCTGCAGGTgttgagacaaaggata s panTro1.chrUn_random 63346327 4012 + 240967748 ttgggcccaataatgtgtcacagtgctttctgcttgcagagcaaagtcaacagagtaatgtcaccgagaagttggacccaccaatgtatcacaatctccttccaaacaaatcctaaaaaacaaaagaagagtaacatgagctaggtgctgggcacagtgatatgtcacaatcctttctttaagcagggactaggcaggagaagaaaatcataccacatgggtgatgggctcatagatatttcacaatgtcccctttggcaaagctcaggaaggagaggtagaccatctaggttttggatgcaacaatatgtcaaaatggccattgtggactgggcaccggcagaagagtcacataacatggatgtgggacccagcaatacatcacaacaccaccgtgagtagcactaatgcaagacagaaaacatacattacctaggtgcaaggccaagtgatatgtcccaatgtcccctgtggacagcaccaaggcaggagataagagtcacatcatctaggtgctggcttcagtgatatatcagaatcccatctgtgagctggacacaggaaacagagctaaaacactcaggacctgggcagagatgtatgtcacaattccacctgCAGAAAGCGACAGGGATGAGATGAACAACTCCACACATGTCCGGATTCCAGGTATGAGAATTTGTATGTTTGGCCTAGGTACACCagtcccaatctcaacagtgaactggattcataaatgattcttctctggctgagaagaacttc----tccccttaggagagttacagtctcacagatgtaatgaattttggtttgagagtcacccacctacctgtggacaagatccatatatgagagtcaAttttctctttctttctttctttctttctttctttctttctttctttctttctttctttctt--ctttctttctttcttc---cttccttctttcttctttctttc---ttctttctttctttc-----tctttctttcttctttc----------attctttcttttcctttctttctt-----------------------tctctttctctttctttctttcttt----------------------------------------ctttctttctttctttcttt-------------------------------------------------ttgttttggtcccttgagatggagtttcactctatcgccaggctagagtgcagtggggcgatctcggctctctgcaacttctgcctcctgggttcaagcaactcttttgcctcagcttcccgagtagctgggattgcaggtacgtgccaccacgctcagctaatttttgtatttttagtagagatggggtggccaggcacagtgtcccatgtctgtaatcccagcactttgggaggtcgaggtggggggatcacctgaggtcaggagtttgagaccagcctaatcaatatggtgaaaccccgtctccactaaaaatacaaaaattagctgggtatggtggcatgagcctgtagtccctgctgactcgggaagctgagacaagagaattgtttgaacccgagagcgcggatgttgcagtaagcctagatggtgccactgaactgccagtctgggtgacagagcaagactctgtctcaaaataataataataataataataataataataatcatcatcatcatcatcatcataaatagtagagagatgtggtttcaccactgttggccaggatggtcttgatcttcttgatctcgtgatctgtccgcctcgggcttcccaaagtgctgcgattacaggcatgagccactgagccACACCggttgtgcccatttttgaggatggtaacttttattgtcaccagagtgtgcatgagtgttagaatctcacctgtttgctgggccctgttaggacactatgtacctcctgtgggccttgtagagtatgcattaaacataatccactctgaggtcttcatgctgatatgaacctatgatcacacctgtggccataagtccaggtatgagagtcaacatctctccagctggctggatccagataagaggatctttacttggctgtaaactgggttcagaaataagtcactatcccaactgtgactggatgttcacatatgatagttacaattccaactgtggactgcattcaggtatgagctttagacctccctaatcacctctgttcctgtgtaggaatgagaattctgatgattggtgggtgtgtatacagagaaaacaatctcacctgtgttctgggccctgtgatgacactgtacaatctgagtgctttacaggatatgcaagagtgcttactttctctgaccttcatagtaagagaagacccataattttgcaagttttgttaagcctggctgtgagagaaagtatctctgctattggttggtttaaggtatgaatatcatcatcacacctacatgctaggccaaaatatatgtgacaatctcacgatttgggtagtcagaagcaggagagtctcatcacctgggtctgtgtcagggacatgttgcagtcttccctgaggacagggacaaggcaagagagtcacatccctaagtgttctgccagggatatgttcttgttccctcctgaaagcacgacacatgcagcagagttaccccacctgggttctgggcccagtgatatgtcacaattttccctgtgaactaagcacaggcaggtgaaacacatcacctgtttgctgggcccagaaatatgctacaatttttcttgtgagcatggttcaggcagaaatggtgggggggatcatattttctaggtgataaatgcagagctatgtcacaaggcccccagtagtcagggtcttggcagaagcttcctattgtctaggtgattggcccagtgatacgtcacaatagctaaattatgtggggcccaaggcaaagaggacagttgcatcacctaagtGATGAACAAAAAgatacttcatagtacccatggggaaatggcccatgcaagtgagtcacattacctacgtgttggacccagtgatatgtcacaatacacaatatatgtagggcgcagccaagagcggagagtcaaatagctcaggtgctgggcccggtgatacattgtaaatctctctttggtcagagccctacagtagaa-aaactcagttcacctcggtgctgaggtcagccatatgtcacaatacccctgagaaatgagcccaggcaaagagtcactacatttaggtgagaggctcacagatattttgcaatggctcctgtgggtagcgctcagtaaaaagacagtcacattacctagAGTCTGCCCTCAACgatttgtaacaatccctgctatgaacaggtagcagtcaggagaagtgagtcccatcacctgggtggtcagtgtagagatatgtcacaatgccccctgtaggcaaagcctagacaagagttacatcacctgggtgttggacccagcaatatgtcacaatggctcatgtgggcaaagcacaggacagagtcacataacaaagtgccaggaccagtgttaggtcaggatacccattatgggcagtgccaagacaggagaatagaagcatattaattaggtgctggattcagggatatatcacaatctcatctgtgggctacacccaggcaaaaatgtcaaatcactcaggtgctggctagaggtgtacgtcagaatcacacctgcaggaaggtccatggatgagattaacaatcccacataagttccggttctgggtatgagagtgaacgcctcctgtatgttgcatctatgtgcataaatcacaatctcaatggaggaatgggttttttccatgagagcctcaatcccTTTTGAAAACGGAGTTATCTTAGTGgactcacagcctcacaagcgttttggatcttggtcagggagtcacaaacccacttaag---gacaatatccacttttaagagccaattttccaacttttgactgcctctgggtgtgagtttcagaacctcaattatggtccatgttcgtgtgggagaatgacaattttgacagatggctgggCTCAGGCAGGAGCCTTTCATCCTGCAGGTTTTGAGACAAAGGATA a score=1732.0 s hg17.chr7_random 183456 40 + 778964 tccttccttccttccttccttccttccttcctttctctct s panTro1.chrUn_random 177692988 38 - 240967748 ctctttctt--ttcattcattcatttctttctttctttct a score=3994.0 s hg17.chr7_random 183516 49 + 778964 ctttctttctttctttctttcttt--ctttctttctttctttctttctttc s panTro1.chr3_random 21984929 51 - 55759144 ctttctttctttctttctttctttccctttctttctttctttctttccttc a score=37846.0 s hg17.chr7_random 186473 503 + 778964 catcacaatacccaaaatatgctgggtgcaggcaaaagaggagactcatattagctggttgctaggtccagttatatgtcaccacctccctttttggcagggctaaggcaaaagaggagagtcagagctaaagaaatgtcataatgtccctgtgggtagggcctatgcataagagttgcatcacctagtcattaaacccagccgtatattagaatacataatgtatacaaggcccaggcaagaaaggagag-aatatcacataggcactgtgtccagcaatatgtcaccataccccccagaggggaggctccaggtaacagggtaacattacctaagtgaagtgcccacagagatgtttcaatgcccctggtgggtaggattttgaaaaacgagaagttacagaacctaggtaacagg-----cctaggtatgtgtcacattcatctccaagacggagcccagacatgagagaaaagtcacatgatgta------gggc-atgtaatatgtcacaa s panTro1.chrUn_random 177695910 510 - 240967748 tgacacaacacctaaaatacgctgggtgcaggcaaaagaggagagccatattagctggttgctaggtccagatatatgtcaccacctccctttttggcagggctaaggaaaaagaggagagtcagagctaaagaaatgtcataaggtccctgtgcgtaggtgctatgcataagagttgcatcacctagtcattgaacccagccatatattataatacacaatgtatacaaggcccaggcaagaaaggagagtaatatcatgaaggtactgggtccagcaatatgacacaataccccct-gaggggaggctccaggcaacaatgtaacattacctaagtgaagtgcccagagagatgtttcaatgcccctggtgggtaggattttgaaaaacgagaagttatagaacctagg-----ggctagtccgagctatatgtcacattcatctccaagaaggagcccagacatgagagaaatgtcacatgatgtaggtactgggcaaagtaatatgtcacaa a score=588644.0 s hg17.chr7_random 186976 6614 + 778964 tccttatgtgagcaggccctaggaagaagtagagagtcacatagtctagatg-atgggcccagaggcatttgacaatgactcctg---tacgtagggaccaggcagaagaatcacatcacccctgtgctgttcccagttataagtcacacttccttctgtgggcatgacccaggcagagagaattcacatcatcccagtgctagacccagggatatgtcacaatctctcttatgggcaatgctcaggtaagagaggagagtctcatcaaataggtgatgtacccagaggtatgtcacgatgccttctgtgaactcgatccaggcagaagattcacatcaACATCAACTTGGTgctaagcccagcaacgtgtcacaatcccttctgtgtaaagggaccaggcaggagaagagaatcacatcacctggctgatgagcacagagatatgtcacaatgcccctgtaaggcagggcccaggcagttgggttacatcacctgagtagtggacccagcaatattaacacagtgtcccatatgggcagtgcacaagccggagagtcacataacctggatgcgaggccaagctatatataacaacgcttcctgagggcagcgccaagtcagaagaggagactcacatcacctgggtgtaaggtctagcgatatgtcaaactgctcactgtgggcagtgccaacgaaggagaatagagttacatcctcaatgtgctggatccagcaatatgttaatatcccatctgtgggctgggtccatgcgagcccgtcaagtcacttaggtGCTAGGCACTGGGAAATTTGACAATGGAAGCTGCAGAATGGTCCAGGAATTAGATTAACAATCGCACAGCTGTCTCAGTGGTAGGCATGACATTCAACACCTCCTGTATGTTGGGTCTAAGCCCACgaataaccatctcaacaccagactggatttgtgcatgagagcctcaattcctctgcagactgacttgtgttcccgtgagaggatgacaatagttactgttggctgggtatgcatatgagtctcacaatctcacctgtgtgctcggcccagttagcacgctctgtgtactacccaatggccctatactgtatgaatgagagttgtaatcaactttgagaccttcctaaaggtagggacccatgatcatacttgtaacattaagcccagggatgagagtcaacatcattacaattaactatgtcaggataggagactcatcccttgcctataagctgggtttagaaacgagccaccatttcaactctggTTGAATGTTTATATATGAACACAggcctagcaccaatgtgatgtgagtc-tttggcctagacacttcaagcaggagacaatgtgacatatctctgggtctatcaactatttgatatgaccttccttttttacctgagctt-tccccataaaagagatgtgacatatgtctagacccagcacctgggtgatgtggctcttctttattgactgagccctgtgtattttgggtattctgacatatccctgtacctaacttctggaagataagaagatccaacatgggccctgcctaaaaagtctcttgtgacaaatttctacatgaatcaccttggagatttgactcttctctcttacctgagctttgcccataagagagattgttacgtacctctgcagcaagcacctaaatgccgtgactcttctttcttgcctgggtcatgcccacagatgaaaggtggcttatcgctgtgtccagcacaccggttatgtgattatgctgcctcatctcttctcacaggagctgttgtgacaaatccctgggcccagaaattatttaatatgactctcctcaatgaccttaactttgtgcatgggataaattgtgacatacctctggatccagcaccgaggtgatgcgactctccttttctacatgggctatgcttacaagaaggaggctgacttattgctgtgttgacaactgatgtgatacctctgttcttgttttcctagattttaagaatttaaacaagagacacaaagaaaaaaagtacagcataatttattggaaaagaaaatatttgaaagttaagtgcagaatacagtacaccctgagagagatactccagggcggactgctcataagagtgagacagcgtggactgtcgctggagaaacccctttatggcagttttacattatt-attaataaggaggagggaaga-ggagttgctagtaaacatgttctctgtggtattctgggtgcatatgcgcagtagctgtacatgcttgttcatatgttgcatgtctcgttagcatcttatatttccacccaggagtgtatttctgtgtgtttgtttgtttgtttgagacagagtctcgccgtgttgcccaagctgcggtgcagtggtgtgatctctgctcactgcaacctctgcctcc-tgagttcaacccatgctcgtgcctctgcctcctgagtatctgggattacaggcatgcaccatcataccctgctaatttttgtatttttaatttagacggggcttctctatgttggccagtttagtctcgagcttctagtttgaagtgatccatcttcctcagcctcccaaagtgctgagagtagaggtataagccaccgtgcctggctagggggtgcattgtttgctattaaaataagcaaaatttaagtttgagggcaggtaaaatcaaaatacacatgctctctagaacagaaagtccttaatgaggatagctttgctcgaataagccaaattacaatgcgaatgctaaggcttattgttttggctgtacagtcaccatggtttctctatcccgagatcatggtcattttctgtactatctattctgcctcaatttccccctaagagattttagggcaataaccatattggaggttgaggggttagaccactttttctggagctgtttcctgctgagtgggtgttacttctgcctagcctgggccttaaagtttcttcctgtgtgatctaacagggtgtaaaccatgtcgttcgtggaaccagtgggaagatgttggcagccaaagattgaaagccttgcaaaccatcatgcaaacatggagttgccacaagcaacatagcaggaaatcagttaacattttaaacaaaattggaacaaaagtagaagttgaaaatataataatgacgggtactattaaagagagcaaggcaggcaatggacattgctttcatgttcccatggaagttcctagagattcaattttgtctgcctgggtgatgatattattaatattttcttggaataaaccagactgattgatctcaaaaaacagcattcttcttttagatataaacctgttcctctttgcttggctgggagaagatcccaggctctttgattttgttggaatacagtggccatgg-agtccagacgttgttgaagtctattgaggccctctgctgcctgttggggacacactgagattttctgagatagtttgtactggattcccaaggatccaccttatggtgacatttgtgctgcaaaagtattctgctttaaaatggtgaaagcagcaaaagtttTAAGTCTTTTCTATTTTTCGCAAATAAGAAAAAGTTTTGTGCAGCTGAGTTGGCAGCAGTCATTGGGTCCATTTATGGATGGTAAAGTTGAATGGTGGTCAAAGTTAGAGACTGGAAGGCTTCAGTAAACGCGCTGAAGTTGTCTGAGAGCCATCAGAGCTGTTGCTTACATTGGATTAGATCATTTACTGGGAAGAGAAGAAGCACTCTGATGGTCCTCTCTCCATTTGAGACTTTCTGTAAGCGGATCAAATTCTCTGGCCCTGCATGGTGTGAAGCTCCACTGTGAGTAACTGCAGCTGGACTGGTCTCTATTGTAACTGGCAAAGGCTGATAGAGGAGCATAAGGAGGAGATGAAACAAGCTTAGATTCTACAGAAGACTCTGATAGTGTGGGGACGCTGGGGATTCTAAAGCAGGTGTAGGCCTCTGAGGGCCCCTATCTGGAGCTGGTATTAGGCTGTGGGGTCTGGGGTCACTTGCCCATAAAACAAATGATCTTCTAATGGATCTGAGGGGCTTTGTGGCTTACTAGGCTTTAGCCCACAGGTGCtgcatggagctgggttttgttgtcgggccagaaagtcttgcacataggatacttcagaccattttccctgattactacagaaaagatctagctgtatgatggtgttaaatttcacagtctcattctccagccatgttttgtcagctaatctgtatgcaggctaaatagttttacaaaagaagataattgtttttttgcttcatttagccaaaagctgtttcaatttttaaatatacatcccaggtgtgtttcagtgacagtagaggaagtgattcccatggtgccgagagaatcc-tgcaaacgacagaacatgtactaaagtccaggaggctgtgggcagcccc-atgagccaagtggaacc-acca-agttgtccaactcatccccttgaaaccccattaactgaagctctaggaggtcataggcatttgccatgcaccgtcctagctctcaccagcgctggacatctccagccctgccgagatgacccccactgctcgctggggagcagatgtctggctgacaagcctttccctaattcagtggtttgccatttatgatgcccaattataacacctgcaatgctcagattcaatccctatgactgggcatatccatgactgtgcatcttttgttcagcaaagaaagcctgttgaaGAACAATTTCAAGGAGCTGGGAAATGCATAAAGCCTAAAGGGACAGGGTTTCCCCAGAACTTTAGTGAAACAGTGCTGGAAGAACCAGCGATAGTTAACCAGGTAGTCTGGAAGTGCCACAGTATTCACGGCAAGTAAAGGGAAAGTGAAATCAGTGAAGCGGACAGACCTCTCTCCAGGCCATGGCAAAAGAAAtgttgatggctgatgtaataccttga-ttcttattttcttagtttaaaagaattcaaacaagaaacacacagcaaaagaagtacagcatagagtaatttattgcacacaaaaaaagaaaagactactttgaaaattaagtgcagaatagacggtacattctgagaaagagattgcagggcaggctgctcataagagtgagacaccattaattgttactggagaaaccctccttctgggggttttgcacgattattcataagaaggtggaaagaagtgttagtgtaagcatgttttgagtggtcttctgggtgcacatgtgcactaactgtacatatttgtgcatacattgcatgtctcattagcatcttaagtctccacctaggaatgtgtttttactattaaaatgagcaaaagttcagtttgaggacagataaaatcaaaatgcacatgttctctagaagtaaaagtccctactgaagatagcGGGTTTCAAACGACCCCAAGTGCTCCACATCTTAAATGTCGCTCCAACAAAGCTGGAACACTATCTGCTCCTGAGGGATCCGGTCCCATTTGTGTTTCTGAGACACTGGCAAGTCAGGAGTGACTTGAGATGAGACCGATGATTTCAAGTGTAAAATGCCTAAATAGTCAGCAGCTTCAGGTTTCATTTTGGAGCTTGTCCACTTAAA-TGGGTTGATGAAAA-TGGCTCACAAGACTCATGCCTCGGAAATGGGGTTTTCTCCTTTGCTCTTAGCAGATTTTGTGCAACCCAATAATTAACCTTCCTGATGCCTCAACTTTCACATTCGTGAAAAAGGCGCCATTGAGAGTGACATTTCCAGGAAGCCACAGACCTTGTCACCCCCTACAGAATTCTGAAGCTGTTCATAAGCAGGCCACGTGGAAGATTTCTCTCAAAAGCTGTTGAGCATGAGGCTTGGCTAGAGAAAAAAGAGGGCTGCGGCACAATGGACAGTGTCTCAGACATCAGGACAGTTTCCACAGCAGTTTAGGAAAGAAGGTAGCGCCCTGGGCTGCAGAAGGCGCAATGCTCTGGAAAGAACCCTGGGTGCAGCTGAAAGAGGAACTTGAGAAGGATAGGGCCAATCAGTTGAGGACAACCCGCCCGATTTGGGCAAAGGTAAGGTGCCTATGTAGGGTAATACCCTCCTCAATGCTCAGCGCAGACCTGTCCTCTAGGTCCACCTATGTACTCATTCTCCTTGGCAAAGAGTCGGCATAGCATAAGAACTCAGCAGTGCTTTGGACACCGGGAAGTCCACACCGCTCTGCCCCTCCCTCCAGGGCTATGCACCCCGGGTCCCGGTACATGCTGTGATTATAGTTCTGAAGCCTACCGACAAACAGGCTGAGAGCAGTTAACAGACTACAGCTCCCAGCATATTAGGTGGGGCGTGTACCACTC--TGCCCCTTCTTCCAGGCCTGTACCTCGCCCCCGAGACTGGCACATGTTGGGATTGTAGTCCTGTAGCCCTTTGACCAAAGGGCTGGGAGTGTTTATAAGAATACATCTCCCAGCAAGCCGAAGGAGACGCACACAGACCCGCCTCTTTCTCCACTGACGGGCCGTGTCCCTGACCCCAGTGCATAATGGGATG s panTro1.chrUn_random 63350827 6625 + 240967748 TCCTTAtgtgagcaggccctaggaagaagtagagagt-acatc-tctacatggacgggcccagaggcatttgacaacgactcctgcttt---taggaaccaggcagaagaatcacatcacccgtgtgctgtgcccagttataagtcacacttccttctgtgggcatgacccaggcagggagaattcacatcatcccaggggtagacccagggatatgccacaatctctcttatgggcaatgctcaggtaagagaggagagtctcatcaaataggtgatgcacccagaggtatgtcacgatgccttctgtgaactcgatccaggcagaagattcacatcaacatgaacttggtgctaagcccagcaacgtgtcacagtcccttctgtgtaaagggaccaggcaggagaagagaatcacatcacctggctgatgagcacagagatatatcacaatgcccctgtaaggcagggcccaggcaggggagttacatcgcctgagtagtggacccagcaatat-aacacagtgtcccatatgggcagtgcacaagccggagagtcacataacctggatgcgaggccaagctatatataacaacgcttcctgagggcagcgccaaggcagaagaggagactcacatcacctgggtgtaaggtctagcgatatgtcaaaatactcactgtgggcagtgccaaggaaggagaatagagttacaccctcaatgtgctggatccagcaatatgttaatatcccatctgtgggctgggtccacgcgagatcatcaagtcactcaggtgctaggcaccgg-aaatttcacaatggaagctgcagaatggtccaggaattagattaacaatcccacagctgtCTCAGTTGTAGGCATGACATTCAACACCTCCTGTATGTTGGGTCTAAGCCCACGAATAATCATCTCAACACCAGACTGGATTTGCGCAtgagagtctcaattcctctgcagactgacctgtgttcccgtgagaggatgacaatagttactgttggctgggtgtgcatatgagtgtcacaatctcacctgtgtgctcggcccagttagcactctctgtgtactacccaatggccctatacagtatgcatgagagttgtaatcagctttgagaccttcctaatcgtagggacccatgatcatacttgtagcattaagcccaaggatgagagtcaacatcattacaattaactaggtcaggataggagactcatcccttgcctataagctgggtttagaaacgagccaccatttcaactctggTTGAATGTTTATATATGAACACgggcctagcaccaatgtgatgtgagtcctttggcctagacacttcaagcaggaggcaatgtgacatatctctgggtctatcaactatttgatgtgaccttccttttttacctgagcttctccccataaaagagatgtgacatatgtctagacccagcacctgggtgatgtggctcttctttattgactgagtcctgtgtattttgggtattctgacatatccctgtacctaacttccggaagataagaagatccagcatgggccctgcctaaaaagtctcttgtgacaaatttctacatgaatcaccttggagatttgactcttctctcttacctgagctttgcccataagagagattgttacgtacctctgcagcaagcacctaaatgccgtgactcttctttcttgcctgggtcatgcccgcagatgaaaggtggcttatcgctgtgtccagcacaccggttatgtgattatgctgcctgatctcttctcacaggagccgttgtgactaatccctgggcccagaaactatttaatacgactctcctcaatgaccttaactttgtgcatgggataaattgtgacatacctctggatccagcacctaggtgatgcaactctccttttctgcatgggctatgcttacaagaaggaggccgacttattgctgtgttgacaactgatgtgatacctctgttcttgtcttcttagattttaagaatttaaacaagagacaccaagaaaaaaagtacagcataatttattggaaaagaaaatatttgaaaattaagtgcagaatacagtataccctgagagagatattccagggcggactgctcataagagtgagacagcgtggattgtcgctggagaaacccctttatggcagttttacattatttattaataaggaggagggaagatggagttgctagtaagcatgttatctgtggtattctgggtgcatatgcgcagtagctgtacatgattgttcatatgttgcatgtctcgttagcatcttatatttccacccaggagtgtatttctgtttgtttgtttgtttgtttgagacagagtctcgccgtgttgcccaagctggtgtgcagtggtgtgatctctgctcactgcaacctctgcctccctgagttcaagccatgctcgtgcctctgcctcctgagtatctgggattacaggcattcaccatcataccctgctaatttttgtatttttcatttagacggggtttcactatgttggccagtctagtctcaagcttctagtttgaagtgatccatcttcctcagcctcccaaagtgctgggagtacaggtataagccaccgtgcctggctagggggtgcattttttgctattaaaataagcaaaatttaagtttgagggcaggtaatatcaaaatacacatgctctctagaacagaaagtccttaataaggatagctttgctcgaataagcccaattacaatgccaatgctaaggcttattgttttggctgtacagtcaccacggtttctgtatcccgagatcatggtcattttctggactatctagtctgcctcaatttccccctaagagattttagggcaataaccatattggaggttgaggggttagaccaatttttctggagctgtttcctgctgagtgggtgttacttctgcctagcctgggccttaaagtttcttcctgtgtgatctaacagggtgtaaaccatgtcgttcgtggaaccagtgggaagatgttggcagccaaagattgaaagccttgcaaaccatcatgcaaacatggagctgccacaagcaagatagcaggaaatcagttaacattttaaacaaaattggaacaaaagtaaaagttgaaaatataataatgactggtactattaaagagagcaaggcaggcaatggacatcactttcatgttcccatggaagttcctagagattcaattttgtctgcctgggtgatgatattattaatattttctaggactaaaccagactgattgatctcaaaaaacagcattcttcttttagatataaacatgttcctctttgcctggctgggagaagatcccaggctctttggttttgttggactacagtggccatggtagtccagatgttgttgaagtctattgaggccctctgctccctgttggggacacactgagattttctgagatagtttatactggattcccaaggatcCAACTTatggtgacctttgtgctgcaaaagaattctgctttaaaatggtgaaagcagcaaaagtttTAAATCTTTTCTATTTTTCGCAAATAAGAAAAACTTTTGTGCAGCTGAGTTGGCAGCAGTCATTGGGTCCATTTATGGATGGTGAAGTTGAACGGTGGTCAAAGTTAGAGACTGAAAGGCTTCAGTAA-CGCGCTGAAGTTGTCTGAGAGCCATCAGAGCTGTTGCTTACGTTGGATTAGATCATTTATTGAGAAGAGAACAAGCACTCTGATGGTCCTCTCTCCATTTGAGACTTTCTGTAAGCGGATCAAATTCTCTGGCCCTGCATGGTGTGAAGCTCCACTGTGAGTAACTGCAGCTGGACTGGTCTCTATTGTAACTGGCAAAGGCTGATAGAGGAGCATAAGGAGGAGATGAAACAAGCTTAGATTCTACAGAAGACTCTGATAGTGTGGGGACGCTGGGGATTCTAAAGCAGGTGTAGGCCTCTGAGGGCCCCTATCTGGAGCTGGAATTGGGCTGTAGGGTCTGGGGTCCCTTGCCCATAAAACAAATGATCTTCTAATGGTTCTGAGGGGCTTTGTGGCTTATTAGGCTTTAGCCCACAGGTGCtgcatagagctgggttttgttgtcgggccagaaagtcttgcatataggatacttcagaccattttccctgattactacagaaaagatctagctgtatgatggtgttaaatttcacagtctcattctccagccatgttttgtcagctaatctgtatgcaggctaaatagttttacaaaagaagataattgtttttttgcttcatttagccaaaagctgtttcaatttttaaatatacatcccaggtgtgtttcagtgacagtagaggaagtgattcccatggtgccgaaagaatccctgcaaacgacagaacatgtgctaaagtccaggaggctgtgggcagcccccatgggccaagtggaacccaccagagttgtccaactcatccccttgaaaccccattaactgaagctctaggaagtcataggcatttaccatgcactgtcctagctctcaccagcgctggacatctccagccctgccgagatgacccccactgctcgctggggagcagatgtctggctgacaagcctttccctaattcagtggtttgccatttatgatgcccaattataacacctgcaatgctcagattcaaaccctatgactgggcatatacacgactgtgcatcttttgttcagcaaagaaagcctgttgaaGAACAATTTCAAGGAGCTGGGAAATGCATAAAGCCTGAAGGGACAGGGTTTCCCCAGAACTTTAGTGAAACAGTGCTGGAAGAACCAGCGGTAGTTAACCAGGTAGTCTGGAAGTGGCACAGTATTCACGGCAAGTAAAGGGAAAGTGAAATCAGTGAAGCGGACAGACCTCTCTCCGGGCCATGGCAAAAGAAAtgttgatggctgatgtaacaccttgaattattattttcttagtttaaaagaatttaaacaagaaacacagagcaaaagaagtacagcatagagtaatttattgcacacaaaaaaagaaaggactactttgaaaattaagtgcagaacagacggtacattctgagaaagagattccagggcaggctgctcataagagtgagacagcattaattgttactggagaaaccctccttctgggggttttgcacgattattcataagaaggtggaaagaagtgttagtgtaagcatgttttgagtggtcttctgggtgcacatgtgcactaactgtacatatttgtgcatacattgcatgtctcattagcatcttaagtctccacctaggaatgtgtttttactattaaaatgagcaaaagttcagtttgaggacagataaaatcaaaatgcacatgctctctagaagtaaaagtccctaatgaagatagcgggtttcaaacgagctcaaGTGCTCCACATCTTAAATGTCGCTCCAACAAAGCTGGAACACTATCTGCTCCTGAGGGATCAGGTCCCATTTGTGTTTCTGAGACACTGGCAAGTCAGGCGTGACTTGAGATGAGATCGATGATTTCAAGTGTAAAATGCCTAAATAGTCAGCAGCTTCAGGTTTCATTTTGGAGCTTGTCCACTTAAAATGGGTTGATGAAAAATGGCTTACAAGACTGATGCCTCGGAAATGGGGTTTTCTCCTTTGCTGTTAGCAGATTTTGTGCAACCCAATAATTAACCTTCCTGATGCCTCAACTTTCACATTCGTGAAAAAGGCGCCATTGAGAGTGACATTTCCAGGAAGGCACAGACCTTGTCACCCCCTACAGAATTCTGAAGCTGTTCATAAGCAGGCCACATGGAAGATTTCTCTCAAAAGCTGTTGAGCATGAGCCCTGGCTAGAGAAAAAAGAGGGCCGCGGCACAATGGACAGTGTCTCAGACATCAGGACAGTTTCCACAGCAGTTTAGGAAAGAAGGCAGCGCCCTGGGCTGCAGAAGGCGCAATGCTCTGGAAAGAACCCTGGGTGCAGCTGAAATAGGAACTTGAGAAGGATAGGGCCAATCAGTTGAGGACAACCCGCCCGATTTGGGCAAAGGTAAGGTGCCTACGTAGGGTAATACCCTCCTCAATGCTCAGCGCAGACCTGTCCTCTAGGTCCACCTATGTACTCATTCTCCTTGGCAAAGAGTCGGCATAGCATAAGAACTCAGCAGTGCTTTGGACACCGGGAAGTCCACACCGCTCTGCCCCTCCCTCCAGGGCTATGCACCCCGGATCCCGGTACATGCTGTGATTATAGTTCTGAAATCTACCGACAAACAGGCTGAGAGCAGTTAACAGACTACAGCTCCCAGCATATTAGGTGGGGCGTGTACCACTCCTTGCCCCTTCTTCCAGGACTGTACCTCACCCCAGAGACTGGCACATGCTGGGATTGTAGTCCTGTAGCCCTTTGACCAAAGGGCTGGGAGTGTTTATGAGAATACATCTCCCAGCAAGCCGAGGGAGACGCACACAGCCCCGCCTCTTTCTCCACTGACGGGCCGTGTCTCTGACCCCAGTGCATAATGGGATG a score=11781.0 s hg17.chr7_random 193590 139 + 778964 GTAGTCCTGCAGCCCTGTGACACAAGTTCTGGGAGTCTTTATGAAACTACATCTCCCAGCAAGCAGAAGGAGGCATCCACAGCCTAGACTTTTCCTCCAGTAATGCGCACTCTCCCTGAGCCGGGTGCATGCTGGGATT s panTro1.chrUn_random 177703222 139 - 240967748 GTAGTCCTGCAGCCCTGTGATGAAAGTTCTGGAAGTCTTTATGAAACTACATCTCCTAGCAAGCAGAAGGAGGTGTCCACAGCCTAGCCTTTTCCTCCAGTAATGCGCACTGTCCCTGAGCCGGGCGCATGCTGGGATT a score=159607.0 s hg17.chr7_random 193729 1742 + 778964 GTAGTCCTGCAGCCCGGTGATGAGAGGTCTGGGAGTGTTTATGAGACTGCAACTCCCACCAAGCCCAGAGAGGCGTGCACAACCCTGCCTCTTCCTCCAGTGACGCGCACATTCCCTGCGCCCGGTCCATGCTAGGATTGTAGCGCTGCAGCCCAGTGACCAAAGGGCTGGGAGTGTTTATGAGACTGCATCTCCCAGCAAGACCAGCGAGGTGTGCAGAGCCTCGCCCCTTTCTCCACTGATTAGCGCACTCTCCCTGATCCCGATGTATGCTGGGATTGTAGTGATGCAGCCCAGTGACCAAAGGGCTGGGAGTGTTTACGAGAATACGTATCCCAAAAAGCATAGCGAGAACAGCACAGGTCCACCTCTTCCTACAGTGACGCGCGTTGTCCCTGAGCAGGATGCATGCTGGGATTGTAGTCTTGAAGCCCTGTGACCAAAGGGCTGGGAGAAATAAAGAGACAACATCTCCCAGAAAGCCCAGCAAGGCGCTCACACGTCTTTCTCTTCCTCCAGTGAGGCGGACTGCCCCGGCGCCCCGTGCATGCTGGAATTGTAGTCCTACAGCGATGTGATGAAAGGGCTGGTAGTGTTTATGAGACTACCTCT-CCCAGCAAGCCCAGAGAGGTGCGCACAGACCTACCTCTTCCTCCAGTGACTAGTGCACTCTCCCTGAGCCAGAGATATGCTGAAATTGTACTGCTGCAGCCCTGCGACCAAACGACTGGGGTAGTTATGAGACTGCATCTCCCTGCAAGCCCAGCGAGGCAC--GCACAGCTCCACGTCTTCCTCCAGTGATACACACTGTCCATGAACCCGCTGCATGCTGGCATTGTAGTCCTGCAGCCCTGTGACCAAAGGGCCAAGAGACCACATCTCCCAGAAGACCTAGGGAGACGCACACAGCTCCGCATCTTTTCCCCGTGTCGCATACTGCTTTGATCCCGATGCATCCTGGGATTGTAGTCCTGTAGCCCTGTGACAAAAGGTCTGAGAGTCTTTATGAAACAACATCTCCCAGCAAACGCAGCGAGGTGCGCACAACCTGCCCCTCTTTCTGCAGTGATGTGGACTCTCCCTGAGCCCCGTGCATGCTGGGATTGTAGTCTTATAGCACTGTGACCATAGGGCAGGGAGAGGCCATGGGACTACATCTCCCAGGAAGCCCAGCAAGGCGCACACTGCCCTGCCTCTTTCTCCTTAGACTAGCGCACTGTCACTGAGCTGAGTGCATGCTAGGATTGTAGTCCTGCAGCCTTATGACCAAAGGGATGGGAGTGTTTATGAGAATACATCTCCCAGTACGCCCAGGAGGTGCACACAGCCCTGCCTCTTCCTGCAGTGATTAGCGCACTATCCCTGAGCTGGGTGCATGTTGGGATTGCAGTCCTGGATCTCTGTGACCAAAGGGCTGGG-AGCGTTAATGAGACTACATCTCCCAAAAAATCACAGCTAGAAGCGCAAAGCCCTCCCTCTTCCTCCAGTGACGCGCGCTGTCCCTGAGCCCAGTGCATGCTGGGGCTGGAAGTGTAGTCCTTCAGCCCTGTGATGAAAGGGCTGGGAGGTTTTATGAGAATACAACTCCCAGCAAGCCTGGCGAGTAGCACACAACCCCGCCTCTTCCTCCACTGACGCACAATTTCCCTGAGCCCGGTGCTGGCTGGGATTGTAGTCTTCCGCCTCTTCCTCCAGTGACAGGAACTGTCTCTTAGCCAGGTGCATGCTGGGATTGTAGTCTT s panTro1.chrUn_random 63357452 1746 + 240967748 GTAGTCCTGCAGCCCGGTGATGAGAGGTCTGGGAGTGTTTATGAGACTGCAACTCCCACCAAGCCCAGAGAGGCGTGCACAACCCTGCCTCTTCCTCCAGTGACGCGCACTTTCCTTGCGCCCGGTCCATGCTAGGATTGTAGCGCTGCAGCCCAGTGACCAAAGGGCTGGGAGTGTTTATGAGACTGCATCTCCCAGCAAGACCAGCGAGGCGTGCAGAGCCTCGCCCCTTTCTCCACTGATTAGCGCACTCTCCCTGATCCCGATGTATGCTGGGATTGTAGTGATGCAGTCCAGTGACCAAAGGGCTGGGAGTGTTTACGAGAATACGTATCCCAAAAAGCATAGCGAGAACAGCACAGGTCCACCTCTTCCTACAGTGACGCGCGTTGTCCCTGAGCAGGATGCATGCTGGGATTGTAGTCCTGAAGCCCTGTGACCAAAGGGCTGGGAGAAATAAAGAGACAACATCTCCCAGAAAGCCCAGCAAGGCGCTCACACCCCTTTCTCTTCCTCCAGTGAGGCGGACTGCCCCGGCGCCCCGTGCATGCTGGAATTGTAGTCCTACAGCGATGTGATGAAAGGGCTGGTAGTGTTTATGAGACTACCTCTCCCCAGCATGCCCAGAGAGGTGCGCACAGACCTGCCTTTTCCTCCAGTGACTAGTGCACTCTCCCTGAGCCAGAGACATGCTGAAATTGTAGTGCTGCAGCCCTGTGACCAAAGGACTGGGGTAGTTATGAGACTGCATCTCCCTGCAAGCCCAGCGAGGCACACGCAGAGCTCCACGTCTTCCTCCAGTGATACACACTGTCGATGAACCCGCTGCATGCTGGCATTGTAGTCCTGCAGCCCTGTGACCAAAGGGCCAAGAGACTACATCTCCCAGAAGACCTAGGGAGACGCACACAGCTCCGCATCTTTTCTCCGTGACGCATACTGCTTTGATCCCGATGCATCCTGGGATTGTAGTCCTGCAGCGTTGTGACAAAAGGTCTGAGAGTCTTTATGAAACAACATCTCCCAGCAAACGCGGCGAGGTGCGCACAACCTGCCCCTCTTTCTGCAGTGATGTGGACTCTCCGTGAGCCCCGTGCATGCTGGGATTGTAGTCTTATAGCACTGTGACCATAGGGCAGGGAGAGGCCATGAGACTACATCTCCCAGGAAGCCCAGCAAGGCGCACACTGCCCTGCCTCTTTCTCCTTAGACTAGCGCACTGTCACTGAGCTGGGTGCATGCTAGGATTGTAGTCCTGCAGCCTTATGACCAAAGGGATGGGAGTGTTTATGAGGATACATCTCCCAGTACGCCCAGGAGGTGCACACAGCCCTGCCTCTTCCTGCAGTGACTAGCGCATTATCCCTGAGCTGGGTGCATGTTGGGGTTGCAGTCCTGGATCTCTGTGACCAAAGGGCTGGGAAGCATTAATGAGACTACATCTCCCAAAAAAGCACAGCTAGAAGCGCAAAGCCCTACCTCTTCCTCCAGTGACGCGCGCTGTCCCTGAGTCCAGTGCATGCTGGGGCTGGAAGTGTAGTCCTTCAGCCCTGTGATGAAAGGGCTGGGAGGGTTTATGAGAATACAACTCCCAGCAAGCCTGGCGAGTAGCACACAACCCCGCGTCTTCCTCCACTGACGCACAATTTTCCTGAGCTCGGTGCTGGCTGGGATTGTAGTCTTCCGCCTCTTCCTCCAGTGACAGGCACTGTCTCTTAGCCAGGTGCATGCTGGGATTGTAGTCTT a score=728452.0 s hg17.chr7_random 195476 8307 + 778964 CCTATGACCAAAGGGTTGGGTATGTTTATGAGAATACATATCCC--ACCAAGTCCAGCGAGGCGTGCACAATGCCGCCTCATTCTGCAGTTACGCGCACTATCCTTGATCTTGGTGCATACTGGGATTGTAGTCCGGCTGCCCTGTAATGAAAAGTCTGGGTGTCTTTATGAAACTACATCTCCCAGGAAGCCAAAGGAGGCTCGCAAAACTGTGTCTCTTCACCCAGGCACATGCACTATCCCTGATCCCGGTGCATGATGGGAATGTAGTCCTGCAGCCCTGTGACCAAAGGGCTGGGAGTGTTTATGAGACAGCATC-TCTCAGCAAGCAAAGCAAGGCCTGCACAGCCCCGCCTTTTCCTCCAGTGAGGCGCACTGTTCATTAAGGAGTGTTCATGAGATTACATTTTCCATCAAGCCCAGCGAGTCACGCACAGCTCTACCTCTTCCTCTGCCAGCGCGCACTGTCTCTGATTCCGGTGTATGCTGGAATTGGGGTGCTGCAGCCCTGTGACCAAAGGGCTGGGAGT-CTTTATAAGACTACATCTCCCAGCAAGCACAAGAGGTGCTCATAGCCGCACACCACCCTCCCCGCCCCACTCTTCTTTCAGTGACCGTGCACTGTCCCGTGAACCTGGTGCATGCTGGAATTCTCCCgttgcgggattcaggaggatgagagagaccccgggttgaaacaggagaatttttattgagtgcactcagtgtcaggcctctgagcctaagctaagccatcgtaccttctgtgacctgcacgtacacatccagatggccggttcttgttttaactgatgacattccaccacaaaagaagtgaaaatggcctgttcctgccttaactgatgacattgtcttgtgaaattccttctcctggctcatcctggctcaaaagctccccgactgagtaccttgtgacccccccactcctgcccgccagagaacaatccccctttttcctttacctacccaaatcctataaaatggccccatccctatctacgtttgctgactctcttttcggactcagcctgcctgcacccaggtgattaaaagcttttattgcttacacgaagcctgtttggtggtctcttcacacggacgcgcatgaaactgaggacaagctaactcacatcaaaaagactgggcccggaacaaa-gacagaacctgacttttatgcacatttcacaaaaggtggtgggctagcttgaagcaagtttacagtggcgtgaaagcagggatacagaggcaggacagacaggattgcacatgaccgttgccaagcaacccacatgtccattttctaggtttccctgggcatgggcttatcctataaccctcactatggtgcccaaacagctgtagttcagcctactcaggcttctcatgacttacattgtacttcttagataaaacagaatacttgaagtcactagttacagagaacaagaatctataaactcattccgt-aaaaaaaggaaatttgtttttcttttcccgatgttgggggagcgttgggagagcctccagagcacattagataatattatcaagactattcctggttctgggctgtgcctgttgaagcctctgggacaagtcagcccaatacaaga--aaatttatttctctttctttttaattttatttttctttaatttccctcctcaGTCCCACAGCCCTGTGACCAAAAGACTGGGAGTGTAtgtcaggcctctgagaccaagccaagccatcgcatcccccgtgacttgcacgtatacgcccagatggcctgaagtaactgaagaatcacaaaataagtgaatatgccctgccccaccttaactgatgacattccaccacaaaagaagtgtaaatggccggtccttgccttaactgatgacattatcttgtgagagtccttttcctggctcatcctggctcaaaaagcacccccactgagcatcttgcga-cccccactcctgcccgccagagaacaaaccccctttgactgtaattttcctttacctacccaaatcctataaaacggctccacccttatctcccttcgctgactctcttttcggacgcagcccgcgtgcacccaggtgaaataaacagccatgttgctcacacacagcctgtttggtggtctcttcacacggacgcgcatgaAA-TGTACAGTTACGc-ttctgttcatttgtcatgagactgttttcttttacccccatgaacgtacttaccatagcttctttcaaatcttatctactgattacagcatcttgcacatcttgagaataggttctattgtctgctttttatcttgtgaatcgattacactttcatgcttcttcacacatctcatgaatttttaaattgtgtgataggaactacagggactctggattctgttgtatttctttgaaaattattattttaagagggagttaatttgaatagattcaaaccccaatccttatctcttccacagtggcatagataaaatcttcattcag-tCTTCTAAACAGTGTGCCTTTCTATATAGCAAAATATAGTATTTTATTAAGCTTTATTATTGTTATCTGTGAAATAGTTATTCAACGAACTAGTCTACTTCATTATTACTGGAAACCAGAACCTCAGTTGTGTTCACTttctggattttatataagtgaaattatataatatgtatacttttacatctactttcttctaggcaactttatatttatgatattaattcatgctattgcagatagctatagtttgtttatttAAAAAATAttttttacattttggcaaagtatacataaaattaaccatcttaactattttaagtgttcagctcagagaaattaactacactcacattgttttgcaactattattcccattcataaggatcttttttcaacttccaaaccaaaattcaatacacattaaataacagctccctgttactccccctccagctcctaggaaccactcttctacgtgggtttccagaa-tttaactactctaagtatctcataagtggaatgatacagtatttgtccttttatgactggctcatgtcactttgcacaatgtccttaaggttcatgcatgacttaccatgtgtcagaatttccttatttttcataactgaataatatcccactgtatgtataaatcacattttatctatttattcattgacgataattcaaacaacacaggtaattcaaaaacattttgagtgaagtgagtcatgctgctatgagcttaggtgtacgtgtattattttgtg-tcttcgctttcacatcttttgcaacataccaagatgtgaaattgctggatcatacggtgattttgagtgtaaattatttcgttactatggtgttgttttatagcagctgcagcattttacatttccacca--agtgtacaagggttctaactgctccacttcctcaccaacacttgtgattttctgttttttttttctttttgtactagttatgctgatgtgcattaagtgatatgtcatttgggg-ttagattttcattttactaatgaaaatgaaaaggttttgttgagtaccttttcatgggcttataagccacttcacataatttttagagaaatatctgtttaagtattttgcccatattttaaacaagtag-----tttattattgctgaattgttctttgtatattctggatagagtcctctttatttatttttcttttgtttcttgcgtttttggtgccctgttaaaagaaatcactgccaaatccagccttatgacgtgttttacctacattttatagtaagaattttgtagttttagctcttacatttaggtcttttatccagttagttaattttttcttatagtagaagttaagggcccagcttcactcttttacatgtgggcacccaatttccccagcactaattgttgtaaaggcagttcatttcccataaaaatcatttgaccttatatatgagggtttatttatatgggccttctatattactccattagtctctttgtagcatgctattttggaa-ttttgtagtaagtcttgaaatcattaagtgtgacttgtctaactttggta--tttttttcaaaattatttttgcaatttaaagatctttgagattccccataaacttaaaaattgattttttaatatctacacaagagtaattggcattttACTTCTTCGTTACttcctaactactttattcttttgatactattgtaaattgaattgttttcagagttttcttctcagattattcatgttactacataaaatgcagttcgtttttgtatgttgattttgtatgctactattcagctgaatttattagttgtaat-ttttttgtgtggaatcttaaagattttctacatataagaatatattttctgtacacactttgatgcagtttatttcattgtcttttttaatttctctgaatgaaacttctaatacagtgttgaataaaagtggctggcaagagcagatattcactctgtcttcggagcttagaggaaacacttttgatcttttcctctggaatatgttgtttgctgtgggtttttatatgtgaattttacaaagctggtttccttttattcctaatttattgtttttattataaaatattttgaattttgtaaaatacg-ttat-ctgtattaatgagagaatactttttaaaaagtttgtc-aatgtggcatatgcattga-ttaattttcatatgcttaaacttttgttaagaaaggctagctaagtgaaccagtgagactggaaaaagaataaagaaatctatactggttgtgatcaattatttgtaaacaccactgcactgaaaccacccatatgctaaaacttcctttcattccaataataaactccccttggtcatgggttgtaatcttgctagtatgctgctgaatgtagttagctaggatgttgctgactagttttgcatccgtgttcataagggatattagtctatgggtttttgtagtatctttgtctggcttcggtatgagctaatggtggcttcatggaataagtttggaactgctctcttcaggcttttggtagactttggaaaggatttttgttctataaatgcttgatctaaatctctagtgaagccaacaaaataagggcttttctttatgaggaggcttttaattactgattccatttccttagtagttttgtatctattcagattttgtatttctttgtaatcaagtcttgtatacctaggaatctgcccactttatctacgttttccaatttatcatcctatcatagttcacagtacagtttttt-aaacattttaattctttgaattagtagtaatgtcccactttcatttctcattttagtatgtgaatatgctgttaattttttgtgtgtgtagctgaaagtttgccaattgttaa-ttttttgaagaagtgagaatgaacttttggttttttggaattctgtggtttgtataatctccattgcatttatctctgctaaaagctttaatatgttcttctttctctttgctttgcatctaatttggtgttatttttctaatttactaggtgataaagttattatttatttgaaatctttgttctttttaaatgtattttagctgcaaactttacatcttagcactctttttgctgtttcccttaacttttgatgtgttttgttttcatttttcttcctctgtaagtatgttccaacttcctctgtgatttcttcctttacttatttgttgtttaagggtatgttgtttaatttatacagttttgtaaactttctaacgtttcttctgttattgatttaatttgagatctactacacagcccatcgtggggaaatccccatgtgcatttgagaagagtgtgtagtctcttttgttggatggagtatattgtatatatctgttagatcaatttggttcattgagttattcaagaactctatttcctaatttatcatctatctcatttttctattcattactcagagtggagtattaacatcttcaactattattttagaactgcctttttgcccttttaattctgtcaagttatgctttctatatctcaatgttttattattaggtatgggtttaaactatttctatcttcctgccaaatggacaatctatgactatataatgtcttattgtctcttttaagtttttaagtctattttgtctgctattaatatagtcattcccagtctctttttcatactattggtataaaataattattttcttcc-ttttttttTATAACCCTCAAGTCCTGTGGAAGGCTAAGAGCAGCATTACTTAA-TTTAAAAAGCAGATAAATCTTAAATCCATAGTTTAATATTTCtaaaagcatttaaatggaaatgagctacgcagtctaccaggaacgaaggatatcagttgggtctaagaataatcatgtcaaaaagctctaggaggaaaagctgctgggaattaagactgtgataacggtctttgggatcaagaaggaaatggggaattggggatgctcaaggtcaggtacatgcttagcaaaagacccagaaaaccctaagctctcacctctgcattttaaactctgcacaagtagaaagtagaggcgcaaggagagatgtaactttatgctgattggtaaaggcatgctccaacacacatacaTAGATCTCAGGTGAAAAAATCAGATATTTATGTTTAGTGAGAGTTAAAAAATCTGGAGTCTTACTTTCCAATTAAGGTTTAGTGAAAATATTTGGGGAGATTTGCATTGATCAATTCATCCTGAGGTCAAGAAAATCTtgattttggcatttggagcctctagtaaaggactagcctcctcccagaggtgttctttgggcttttggactcagtgacacactactggttacactgatttgaaagtcagctaagagcttgctgcagaactcctgagaaactcagtttcacccatagagggctagagcatccccagcTGGTTgaaattttatacctccttctatcctctgaagcaaagatgctgtctctgtggggcccccaatttactgagtgtttcctatatgactggtcctggttcatagatgagtcagggaaggtgaaacctcatgatgtccactgggccgctgtggctgtttaacctgtgccagccatacagaacctgacatgagtggttgctcctctcaaaggtcagaactcaGGGTTTGGGATAATGGCACATATTCTATCTGTTTGGTTATCTACAATGGAAACTGTAGACTGTCTGAATGtcttttgggctgcaaactggagacaatctcagatgctgatctaactggatcactcatctagaagtccatggtaagggtttgttttctagagagtgacaacaatcaagctgcagattgaacctAAATCtgtgtctaacgcagagtctaatactgcaaaccagacttggggttgctggtgaaagttgacctatttgtctcatggttgaagaATTCCTAGACCATACCAAGCAGAGTAACCAGAAGTGGACTTTTGGCCCACTTCTTGAGATATCAGTCACCACTCTTGACATCTTCAGCATAACAGTATGCTGACACCATCCATACCATGTGTCCCGTGAAGCTAATCTGTGCCATCTTTTAGGCTTTTGAGAC-CAATTGAGCTCTGACTTCGCGGCATTTTTCACCACACGTACTAAAACAAGCCAACTCTATGATGTTCCCTCCTTTTCCACACATGCTGGTTAGATAATTTGTTGATTAGGTATGGTTTATTTTCTCTTCCTGATTGCCTCCAAGATAAGGATGAAATGATTGGGAGATCTAGGAATCATCTAGGAATCTATTTCACAAACTTGG--AATTTCGTGCTAATAATTCCTGGGT-GAAATGTGAC-TTTCTTTCCCATAACTGCAATTCTAGGCAAG-CCTGGCTTTTGTA-TCCTCTGAGTTGCATCTCAGCCTAGTAGCAGTTATGGGACTCCAACTTAGTTCCAGCTAAGttttatgtaaatattcttgtctctattttaactgcctctagtagataaagtgtctagaaaaaagtagagggcgactagaataaagatgagattataggtaccggaatgagacacactgattctgtggaagtagtgggagaacaacctggaacctggggTATGAACAACACAGACCTCGGAAGCTACGGGAAACGGTGGGACATTAACAACTTTTTTTCTTTCTGAACAACCCCTGGTGCAGCCCACAGAAAGGTCTGGAAATACTATTAGTTAGATCAGACGGTA s panTro1.chrUn_random 63359203 8334 + 240967748 CCTGTGACCAAAGGTTTGGGCATGTTTATGAGAATACATATCCCGAACCAAGTCCAGCGAGGCGTGCACAATCCCGCCTCATTCTCCAGTTACGCGCACTATCCTTGATCTTGGTGCATACTGGGATTGTAGTCCTGCTGCCCTGTAATGAAAAGTCTGGGTGTCTTTATGAAACTACATCTCCCAGGAAGCCAAAGGAGGCGCTCAAAACTTTGTCTCTTCGCCCAGGCACATGCACTATCCCTGATCCCGGTGCATGATGGGAATGTAGTCCTGCAGCACTGTGACCAAAGGGCTGGGAGTG-TTATGAGACTGCATCTTCTCAGCAAGCAAAGCAAGGCCTACACAGCCCCGCCTTTTCCTCCAGTGAGGCGCACTGTTCATTAAGGAGTGTTCATGAGATTACATTTTCCTTCAAGCCCAGAGAGTCACGCACAGCTCTACCTCTTCCTCTGCCGGCGCGCACTGTCTCTGATTCCGGTGTATGCTGGAATTGCGGTGCTGCAGCCCTGTGACCAAAGGGCTGGGAGTCCTTTATAAGACTACATCTCCCAGCAAGCACAAGAGGTGCTCACAGCCGCACACCACCCTCCCCGCCCCACTTTTCCTTCAGTGACCGTGCACTGTCCCGTGAACCTGGTGCATGCTGGAATTCTCCtgttgtgggattcaggaggatgagagagacctcgggttgaaacaggagaatttttattgagtgcactcagtgtcaggcctctgagcctaagctaagccatcatatcttctgtgacctgcacgtacacatccagatggccggttcttgttttaactgatgacattccaccacaaaagaagtgaaaatggcctgttcctgccttaactgatgacattgtcttgtgaaattccttctcctggctcatcctggctcaaaagctcccccactgtgtaccttgtga-ccccccactcctgcccgccagagaacaacccccctttttcctttacctacccaaatcctataaaatggccccacccctatgtacgtttgctgaatctcttttcggactcagcctgactgcacccaggtgattaaaagcttttattgcttacacgaagcctgtttggtggtctcttcacacggacgcgcatgaaactgaggacaagctaactcacgtcaaaaagactgggcccggaacaaaggacaacacctgacttttatacacacttcacaaaaggaggtgggctagcttgaagcaagcttacagtggcgtgaaagcagggatacagaggcaggacagacaggattgcacatgaccgttgccaagcaacccacacgtccattttctaggtttccctgggcatgggcttatcctataaccctcactatggtgaccaaacagctgtagttcagcctactcaggcttctcatgacttacatcgtacttcttagataaaacagaatacttgaagtcactggttacagagaacaataatctataaactcattccgtaaaaaaaaggaaatttgtttttcttttccgtatgttgggggaaaattgggagagactccagagcacattagataatattatcaagacttttcctggttctgggctgtgcctgttgatgcctctgggacaagtcagcccaatacaagactaaatttatttctctttcttttaaattttatttttctttaatttccctcctcaGTCCCACAGCCCTGTGACCAAAAGACTGGGAGTGTAtgtcaggcctctgagaccaagccaagccatcgcatcccctgtgacttgcatgtatacgcccagatggcctgaagtaactgaagaatcacaaaagaagtgaatatgccctgccccaccttaactgatgacattccaccacaaaagaagtgtaaatggccggtccttgccttaactgatgacattactttgcgaaagtacttttcctggctcatcctggctcaaaaagcacccccactgagcaccttgcgaccccccactcctgcccgccagagaacaaaccctctttgactataattttcctttacatacccaaatcctataaaacggccccacccttatctcccttcgctgactctcttttcggactcagcccgcctgcacccaggtgaaataaacagccatgttgctcacacaaagcctgtttggtggtctcttcacacggacgcgcacgaAAGTGTACAGttacactttctgttcacttatcatgagactgttttcctttacccccatgaaagtacttacaatagcttctttcaaatcttatctactgattacagcatcttgcacatcttgagaataggttctattgtctgctttttatcttgtgaatcgattacactttcatgcgtcttcacgcatctcatgattttttaaattgtgtgataggaactacagggactctggattgtgttgtatttctttgaaaattattattttaagagggagttaatttgaatagattcaaaccccaatccttatctattccacagtggcatagataaaatcttcattcagttcttctAAACAGTCTGCCTCTCTATATAGCAAAATATAGTATTTTTTTAAGCTTTATTATTGTTATCTGTGAAATAGTTATTCAACGAACTAGTCTACTTCATTATTACTGGAAGCCAGAACCTCAGTTGTGTTCACTTTTTGGATTTTATGCAAGTGAAATTACATAATATGTATACTTTTACATCTACTTTCTTCTAGGCAACTTTATATTTATGATATTAATTCTTGCTATTGCAGATAGCTATAGTTTGTTTATTTAAAAAATAttttttacattgtggcaaagtatacataaaattaaccattttaactattttaagtgtgcagctcagagaaattaactacgctcacattgttttgcaactattattcccattcatagggatcttttttcagcttccaaaccaaaattctatacacgttaaataacagctccctgttactcccccgccagttcctaggaaccactcttctacgtgggtttccagaattttaactactctaagtatctcataagtggaatgatacagtatttgtccttttatgactggctcatgtcactttgcacaatgtccttaaggttcatgcatgacgtatcatgtgtcaaaatttccttatttttcataactgaataatatcccactgtatgtataaatcacattttatctatttattcattgatgataattcaaacaacacgggtaattcaaaaaccttttgggtgatgtgagtaatgctgctatgagcctaggtttacgtgtattattttgtgttctttgctttcacatcttttgctacgtaccaagatgtgaaattgctggatcatatggtgattttgagtgtaaattatttcgttactatggtgttgttttatagcagctgcagcattttacatttccaccaacagtgtacaagggttctaactgctccacttcctcaccaacacttgtgattttctg-tttttttttcttttggtactagttatgctgatgtgtattaagtgatatgtcatttggggcttagattttcattttactaatgaaaatgaaaaggttttgttgagtaccttttcatgggcttataagccacttcacataatttttagagaaatatctatttaggtattttgcccatattttaaacaagtagtttgttttattattgctgaactgttctttgtatattctggatagagtcctctttatctatttttcttttgtttcttgcgtttttggtgtcctgttaaaaaaaatcactgccaaatccagccttatgtcatgttttacctacattttatactaagaattttgtagttttagctcttacatttaggtctttgatccagttagttaattttttcttatagtagaagttaagggcccagcttcactcttttacatgtgggcacccaatttccccagcactaattgttgtaaaggcagttcatttcccataaaaatcatttgaccttatatatgagggtttatttatatgggctttctatattactccattagtctctttgtagcatgctattttggaatttttgtagtaagtcttgaaatcattaagtgtgacttctctaactttggtatttttttttcaaaattatttttgcaatttaaagatctttgagattccccataaacttaaaaattgattttttaatatctacacaaaagtaattggcattttACTTCTTGGTTACttcttaactactttattcttttgatactattgtaaattgaattgttttcagagttttcttctcagattattcatgttactacataaaatgcagtttgtttttgtgtgttgattatgtatgctactactcagctgaatttattagttgtaatattttttgtgtggaatcttaaagattttccaaatataagaatatattttctgtacacactttgatgcagtttatttcattgtcttttttaatttctctgaatgaaacttctaatacagtgttgaataaaagtggctggcaagagcagatattcactctgtcttctgagcttagaggaaatacttttgatctattcctctggaatatgttgtttgctgtgggtttttatatgtgaattttacaatgctggtttccttttattcctaatttattgtttttattataaaatattttgaattttgtaaaatacgtttatcctgtattaatgagagaatactttttaaaaattttgacaaatgtggaatatgcattgatttaattttcatatgcttaaacttttgttaagaaaggctagctaagtgaaccagtgagactggaaaaagaataaagaaatctatactggttgtgatcaattatttgtaaacaccactgcactgaaaccacccatatgctgaaacttcctttcattccaataataaactccccttggtcatgggttgtaatcttgctagtatgctgctgaatgtagttagctaggatgttgctgactagttttgcatccgtgttcataaggcatattagtctatgggtttttgtagtatctctgtctggcttcggtatgagctaatggtggcttcatggaataagtttggaactgctctcttcaggcttttggtggactttggaaaggatttttgttctataaatgcttgatctaaatcactagtgaagccaacaaaataagggcttttctttatgaagaggcttttaattactgattccatttccttagtagttttgtatctattcagattttgtatttctttgtaatcaagtcttgtatacctaggaatctgcccactttatctaggttttccaatttatcatcctatcatagttcacagtacacttttttaaaatattttaattctttgaattagtagtaatgtcccactttcatttctcattttagtatgtgaatatgctgttaattttttttgcatgtagctgaaagtttgccaattgttaatttttttgaagaagtgagaatgaacttttgtttttttggaattctgtggtttgtataatctccattgcatttatctctgctaaaagctttaatattttcttctttgtctttgctttgcatctaatttggtgttatttttctaatttactaggtgataaagttattatttatttgaaatctttgttctttttaaacgtattttagctgcaaactttacatcttagcactctttttgctgtttcccttaacttttgatgtgttttgttttcatttttcttcctctgtaagtatgttcctacttcctctgtgatttcttcttttacttatttgttgtttaagggtatgttgtttaatttatacagttttgtaaactttctaacgtttcttctgttattgatttaatttgagatctactatacagcccatcgtggggaattccccatgtgcatttgagaaaagtgtatagtctcttttgttggatggagtatattgtatatatctgttagatcaatttggttcattgagttagtcaagtcctctatttcctaatttatcatctatctcatttttctattcattactcagagtggagtattaacatcttcaactattattttagaaccgcctttttgcccctttaattctgtcaacttatgctttctatatctaaatgttttattattaggtatgggtttaaactatttctatcttcctgccaaatggacaatctatgactatataatgtcttattgtctcttttaagtttttaagtctattttgtctgctattaacgtagtcattcccagtctctttttcatactattggtataaaataattattttcttccttttttttTTATAACCCTCAAGTCCTGTGGAAGGCTAAGAGCAGCATTACTTAATTTTAAAAAACAGATAAATCTTAAATCAATAGTTTAATatttgtaaaagcatttaaatggaaatgagctacgcagtctaccaggaacaaaggatatcagttggctctaagaataatcatgtcaaaaagctccaggaggaaaagctgctgggaattaggactgtgataacggtctttgggatcaagaaggaaatggggaattggggatgctcaggatcaggtacatgcttagcaaaagacccagaaaaccctaagcgctcacctctgcattttaaactctgcacaagtagaaagtagaggcacaaggagagttgtaactttatgctgattggtaaaggcatgctccaacacacatacaTAGATTTCAGGTGAGAAAATCAGATATTTATGTTTAGTGAGAGTTAAAAAATCTGGAGTCTTACTTTCCAATTAAGGTTTAGTGAAAATATTTGGGGAGATTTGCATTGATCAATTCATCCTGAGGTCAAGAAAATCTtgattttggcatttggagcctccagtaaaggactagcctcctcccagaggtgttctttgggcttttggactcagtgacacactactggttacactgatttgaaagtcagctaagagcttgctgcagaactcctgccaaactcagtttcacccatagagggctagagcatccccaacTGCTAgagatttcatgcctccttctatcctctgaagcaaagctgctgtctctgtggggcccccaatttactgagcatttcctatatgactggtcctggttcatagatgagtcagggaaggtgaaacctcatgatgtccactgtgccgctgtggctgtttaatctgtgccagtcatacagaacctgaaatgagtggttgctcctctcaaaggtcagaactcaGGGTTTGTGGTAATTGCACATATTCTATCTGTTTGGTTATCTACAATGGAAACTGTAGACTGTCTGAATGtcttttgggttgcaaaccggaaacaatatcagatgctgatctaactggatcactcatctagaagtccatggtaagggtttgttttctagagagtgacaacaatcaagctgcagattgaacctAAATCtgtgtctaacgcagagtctaatactgcaagccagacttggggttgctggtgaaagttggcctatttgtCTCATAGTTGAAAAATTCCTACACCATACCTAGCAGAATAACCAGAAGTGGACTTTTGGCCCACTTCTTGAGATATCAGTCACCACTCTTGACATCTTCAGCATAACAGTATGCCGACTCCATCCATACCATGTGTCCCTTGAAGCTAATCTGTGCCATCTTTTAGGCTTTTGAGACTCAACTGAGCTCTGACTTCGTGGCATTTTTCACCACACGTACTAAAACAAGCCAACTCTATGATGTTCCCTCCTTTTCCACACATGTTGGTTAGATAATTTGTTGATTAGGTATGGTTTATTTTCTCTTCCTGATTGCCTCCAAGATAAGGATGAAATGTTTGGGGGATCT----------TAGGAATCTATTTCACAAACTTGGGAAATTTCGTGCTAATAATTCCTGGGTGGAAGTGTGACTTTTCTTTCCCATAACTGCAATTCTAGGCAAGCCCTGGCTTTTGTATTCCTCTGAGTTGCATCTCAGCCTAGTAGCAGTTATGGGACTCCAACTTAGTTCCAGCTAAGttttatgtaaatattcttgtctctattttacctggctctagtagataaagtgtctagaaaaaagtagagggcgactagaataaagatgagattataggtaccggaatgagacacactgattctgtggaagtagtgggagaacaacctggaacctggggTATGAACAACACAGACCTCGGAAGCTACGGGAAACGGTGGGACATTAACAACTTTTTTTCTTTCTGAACAACCCCTGGTGCAGCCCACAGAAAGGTCTGGAAATA-TATTAGTTAGATCAGACGGTA a score=6202.0 s hg17.chr7_random 203783 45 + 778964 AGGCAGAGGCTGTGGATTCA-TCTCCTTTTGGTCCCCACATTACTC s panTro1.chrUn_random 63367537 45 + 240967748 AGGCAGAGGCTGTGGATTCA-TCTCCTTTTGGCCCCCACATTACTC s rn3.chr17 91670575 40 - 97307196 AGGGAGGAGCTGAGGGCTCACTCTTCTCTCTGTCCTCACA------ a score=48169.0 s hg17.chr7_random 203828 301 + 778964 TTAAGAATCCTTTGAGACTATTCTATCTCTCCGTGATGTAGGCATGGAACTCTAGTGGGCAGTGTGCACTCTCGG----TGCCCATG-GTTCCAGGCCACAGTTT--TTCAGATGATGGACAACAA-------------------TTGCTTTTTCCTGAAGAGACTTAGTACCCTGTGGCTGAGCTT--AAGCGGGACTCTAGACAGCATTGATTGCATTTTCTTCTTCCTCTACGAACTGGGATTTCTCCTTCTGTTTTTCT-----ACTGCCTAGAGGTGAATCTGTATTTGTCAATATTTAGGTAAATCAGAGACATAAATCAGGTAAGGA s panTro1.chrUn_random 63367582 303 + 240967748 TTAAGAATCCCTTGAGACTATTCTATCTCTCCGTGATGTAGGCATGGAACTCTAGTGGGCAGTGTGCACTCTCGG----TGCCCATA-GTTCCAGGCCACAGTTT--TTCAGATGATGGACAACAA-------------------TTGCTTTTTCCTGAAGAGACTTAGTACCCTGTGGCTGAGCTT--AAGCAGGACTCTAGACAGCATTGATTGCATTTTCTTCTTCCTCTATGAACTGGGATTTCTCCTTCTGTTTTTCTGCGTGACT---TAGAGGTGAATCTGTATTTGTCAATATTTAGGTAAATCAGAGACATAAATCAGGTAAGGA s rn3.chr17 91670615 298 - 97307196 -----AACCCTCTATGACT-CTCCCTTGCTCTGTGATGCAGACCTAGGCCTACAGTGAGGCCCATGCAACCTCAG----AACTCAGATACTTCAGGCATCCATGTAACTCAGTCTATGGAGAACAT-------------------CCTCTCTTTTCTGAATAGATATATTGAACCATGGTTAGGCTTTGGATCAACATTCTTG--AATACTGGTTCCAATTACATCTTCCTGAGTGGAGTGGGGTCTATCCTTCTATACCTGT-----GGTATTTGATATTGAAACCATTCTTCCCACCACCTTGGAAAAGTCAGGACATCAAAAAGGTGAGGA s canFam1.chr1 106419972 311 + 124897793 TTAGGAACCCTTTGAAACC-------TCATCTGTGATGCAGGTCTGGAATTCTGTCTGGAGCCTTACATGCTCAACGTTTGCCCAGA-------AGCAGCAGAGTACTTCAGAGTATAGA-AGTAttttttgtttttgttttttgttttttttttttAAGTATACTTGGTGCTCT-TGACTGAACCT--AATCTGGATTCCACGAATCCTTGATTCAATCCCTTGGTTCCCATGTGAGGTGTGCCTCTTCCTTCTAGTTTTCC-----ACGACCTAGAAAGGAATCAATTTTTGTCATTTTTTGGTTAAACCTGAGAGATAAATGAGGTAGGGA a score=23103.0 s hg17.chr7_random 204129 256 + 778964 -ACCCTAGACACTGCTTCTAG-GCTAGCTGGACTCTTGCCTATTTCCCTTCTCACTTTATGAGATCAATTATATTG-GCACAGGTTGATACCCTTAGATAGTGTCTCTAAGGAGCAATTAGAGAAGCATACTTCTAGAGAAGCATACTTCTAGAGAAGCTGGTAGGACAGGGCAGGAGGGCCA---ATGAGGATCAAAGTTTCTGTCC--AAATTTTTGAGCC-TAGGTGTG-TGTGGCCGACGAATCCAGGAAAGATCCCAGATC s panTro1.chrUn_random 63367885 243 + 240967748 -ACCCTAGACACTGCTTCTAG-GCTAGCTGGACTCTTGCCTATTTCCCTTCTCACTTTATGAGATCAATTATATTG-GCACAGGTTGATACCCTTAGATAGTGTCTCTCAGGAGCAAT----------------TAGAGAAGCATACTTCTAGAGAAGCTGGTAGGACAGGGCAGGACGGCCA---ATGAGGATCAAAGTTTCTGTCCAAAAATTTTTGAGCCTTAGCTGTG-TGTGGCCGACGAATCCAGGAAAGATCCCAGATC s canFam1.chr1 106420283 233 + 124897793 AGCCATAG--ATTAGTCCTGGCATTAAATGAACTTT------GTTCTTTTTCCACTTGACTAGATTAGTAACATTGTACACAGA--GATACCTTGCTATGGACATGCTGAGGAAAGAATAGAACATTATACTGAGAGAAAAAAAT-----------------TGGGACAGGAC--GTTAGTCAAGCATGAGGACTAGGACTTGTATCC---AACCTTCCAGTC-CATCTGTGCTGTAGCGAAGAAATCCCACAGTGTTTCCGGAAC a score=16625.0 s hg17.chr7_random 204385 141 + 778964 CCTGGAAGGGATTGTTAAGAGAGGA---------TCCATTAGATTAGAATGCTAGGGTGGGTGTTCATCCG-TCGCCTTCTGAGTGGGATTTTCAGGGTTAAGACTGAG-----------GTAGGGCTGCAGAGAAATGCTATCCTGGGAAAG-CCTCTGATC s panTro1.chrUn_random 63368128 142 + 240967748 CCTGGAAGGGATTGTTAAGAGAGGA---------TCCATTAGATTAGAATGCTAGGGTGGGTGTACATCCG-TCGCCTTCTGAGTGGGATTTTCAGGGTTAAGTCTGTG-----------GTAGGGCTGCAGAGAAATGCTATCCTGGGAAAGCCCTCTGATC s canFam1.chr1 106420721 158 + 124897793 CCTGGAGGACATTATTAAGTGAGGGCAGGGCATCTCCAAGAGATGAGAGTTCCACAATTGTCATTCATCAGCTAACCTCCCATGTCAGGGTCTCTGGACCAAGCCTTTGTGATTTAGCTTATTAGAATGCAAAGAGG----AGCCTGTGAAAG-CCTGTGTTC a score=23264.0 s hg17.chr7_random 204526 216 + 778964 GAGTGCAACA-------TAGGTGGCTCCAG-------------------------CACAAGGAGAAGTCCTCTATTTGAGGA-------ACACCATACTTGTGTGGATGTGTCTGTGCTCTTCCTCAGCAGAGCCCCACTGACTGAATGATTGTTTGAGAATTATGAGTAAAGAGCCCTATATTATTTTGAATTTAGTAAATATTGGAAGAGAAAC---AAACAATATTATCTACTTTCAAATTGAATAACAGCATGA s panTro1.chrUn_random 63368270 216 + 240967748 GAGTGCAACA-------TAGGTGGCTCCAG-------------------------CACAAGGAGAAGTCCTCTATTTGAGGA-------ACATTATACGTGTGTGGATGTGTCTGTGCTCTTCCTCAGCAGAGCCCCACTGACTGAATGATTGTTTGAGAATTATGAGTAAAGAGCCCTATATTATTTTGAATTTAGTAAATATTGGAAGAGAAAC---AAACAATATTATCTACTTTCAAATTGAATAACAGCATGA s canFam1.chr1 97520354 235 + 124897793 AAGGGCAGCGCTGGGCTCAGGAGGCCCCAGGAAGCAGCTGGAGTGGGGCTCTGACCTCGGGGAGCAGGGTCTTACCTGAAGAAACGCAGATGCTGCAGGTCTGAGAATGTGTGTGT----TTCTTGAGCAGAGGATCAGTGACAGAGGAATTTCT---------CATGTAGAAAATCC-----TTCTGTACATTCTTCAAA-----GAAGAAAAACTGAAAACGTATTTATCTACTTTGAAAATGAGTAAAAGAAAGA a score=9252.0 s hg17.chr7_random 204742 107 + 778964 GCAACTTCCAGGAAAATGTCACAGGAGGAAACTCCAGGGCCTTGCTCATCCCTGGAAACCTTGAAAATCCTGATGCAACCTGTAGGGTTAAACTTATCA-ATACTTAA s panTro1.chrUn_random 63368486 108 + 240967748 GCAATTTCCAGGAAAATGTCACAGGAGGAAAGTCCAGGGCCTTGCTCATCCCTGGAAACCTTGAAAATCCTGATGCAACCTGTAGGGTTAAACTTATCAGACACTTAA a score=30701.0 s hg17.chr7_random 204849 229 + 778964 TTTTTTGCCATATAGATTTATCTTCAT-AAAAATATTTTCATTGGACCTTCATTTTGATATATGCCATGAAGAATAAATCATTTATTTCCTTTGTGATAAGAACATCACATTTTTACACCTCATGTATAAATGATGCCACCACCCATGTAGTTTTTATtgct------atggcctgaatgtttatgtcccctttcaaattc--atgtgtataattttaggcgtgaggcctttgggaaa s panTro1.chrUn_random 63368594 232 + 240967748 TTTTTTGCCATATAGATTTATCTTTATAAAAAATATTTTCATTGGACCTTTATTTTGATATATGCCATGAAGAATAAATCATTTATTTCCTTTGTGATAAGAACATCACATTTTTACACCTCATGTATAAATGATGCCATCACCCATGTACTTTTTATtgct------atggcctgaatgtttatgtcccctttcaaattcctatgtggataattttaggcgtgtggcctttgggaaa s canFam1.chr1 17856591 214 - 124897793 TTTTTTGCCATATGGTTGTAT--------------TTCTCATTGAATCTTTACCTTGTTATAGGATGTGAAGAGTAAATCAATTTCTTACTTTGTGATGGTAATATCAAGTTCCCAAACCCTAAGTATTAATAATGTCATCCCCCATA----TTTTATTGCTTATTAACTTTCTCAAATACTTTGACCTATTTTTGAATTT--TTATCTCTACTGATCTGCATAA----TTTAGGAAA a score=8697.0 s hg17.chr7_random 205078 94 + 778964 gtggtgaagccaagagttcttcatcttcatgaatggaatcagtgctctttcaaaggaagttgaagggaatgcccttgtcccatgtgcgagatgg s panTro1.chrUn_random 63368826 94 + 240967748 gtggtgaagccaagagttcttcatcttcatgaatggaatcagtgctctttcaaaggaagttaaagggaatgcccttgtcccgtgtgcgagatgg a score=60691.0 s hg17.chr7_random 205172 638 + 778964 taccatctatggggaatagggctctcaccatatacgaaatttgctgctgccttgatcttgcactttccagactccataactgtgaaaaatacatttctcttatttatcctttacccagtctaaggtattttgttatagcagccaagatgcactatgacaCTTTCTTAGACACTTTGGTTTATTTCTGAATTTTTAGTTTCAGTGATCCATGAGTTTTTTAATCAATCAAGATTTTACGCAGGGCTTGCCAGTGGG-----------tttttttttttttttcag--agttttcttgtctattcttgtttgtgttttcatctatataacattttat------------------agtaacgtg--tacttgcaa----tatttaatggtatcagtataggaacaaaattgaatttata-aataactataaggacaattgatg-ttgataatattgagtttttctgcctaagaata-tgatacaaattgtctatttgcttatgtctacattcatatatttcataaactttctatgttttttccatattccgtagatatttttgtaatatttattcctagtttattctgctaaaaagtaatttgagacacaatgaaattgcaaagtgtttatttgagtaagagcaattgataaattataaaatatcagacggaaagatatt s panTro1.chrUn_random 63368920 648 + 240967748 taccatctatggggaatagggctctcaccatatactaaatttgctgctgccttgatcttgcactttccagactccataactgtgaaaaatacatttctcttatttatcctttacccagtctaaggtattttgttataacagccaagatgcactatgacaCTTTCTTAGGCACTTTGGTTTATTTCTGAATTTTTAGTTTCAGTGATCCATGAGTTTTTTAATCAATCAAGATTTTACACAGGGCTTGCCAGT--Gttttttttttttttttttttttttttcaga-agttttcttgtctattcttgtttgcgttttcatctatataatattttat------------------agtaacgtg--tacttgcaa----tatttaatgttacctgtataggaacaaaattgaatttata-aataactttaaggacaattgatg-ttgataatattgagtttttctgcctaagaata-tgatacaaattgtctatttgcttatgtctacattcatatatttcataaactttctatgttttttccatattccgtagacatttttgtaatatttattcctagtttattctgctaaaaagtaatttgagacacaatgaaattgcaaagtgtttatttgagtaagagcaattgataaattataaaatatcagatggaaagatatt s canFam1.chr1 17856876 412 - 124897793 taccatcttaatggattag--------------------------------------------------------------gtgtacaatacact----------------------------ggtgatt--------------atatgtacaata--------ttatacatatt-gtatagctctggatttt-----------attca------tcttgcctaactaaaacttta-------------------------------tcctcattTTTTTTCAGATTTTTTTTTTGCCTATCCTTATTTGTATTTTCATCTGTAAGAttttttttttttttttttttttttGCAATAACATGCCTAGCTCCAATGAGTAACTGAtggtatctgtatcaggaccaaattaaatttatataattagcttaggg---attgatgtttgataatatggaattttcctacccaagaacagtgatgtga-------ttttatttttgtctattttcatatatttcagaaattttacatggtttct----------tatacacatttgatacatttttattggatttattct-------------------------------------------------------------------------------------cagatatt a score=9269.0 s hg17.chr7_random 205810 108 + 778964 gagtgcttcattgacagtgtaagaagcaagtatttatttgaaaaatgtagaaacaaagaaatcat----ttggtggtagcacaactttttttattgttttttgtttgtctgt s panTro1.chrUn_random 63369568 112 + 240967748 gagtgcttcattgacagtgtgagaagcaagtatttatttgaaaaatgtagaaacaaagaaatcatttgattggtggtagcacaactttttttattgttttgtgtttgtctgt a score=116828.0 s hg17.chr7_random 205918 926 + 778964 ttaccttgttggacagtttctatttatataaggttgttggctacttctgactggttgagcttcatttctcttttttcaatatgcagctacaagaaataatgtaagttttgtttgtatttgcaaatcaagcgaggttgagatcacttatgagacctaactaattttgtctgctcagagattattgagacatgatctccattttaatttcctttaacaAATTTTCTGTACTTTTACTTTCCA-TCCAAACAGTAACTTATAAATTATTATTGTTGTACATATGTAGGCCCATGTTGTGTATGCTTTGAAGACCTGTCCTGCATTCAAACTCATTTGTATTATGTTATTATTGAATTTGCCCCATTTATTGGAATTATAAACTGCAATCCCCCAACTACAAGAGGTATGAGCTCTGATG-AGATAAGAGTAAAGATGAAT-CAGAAGT-----------GAAAACCGTCCTCCAACCCACACATGCAGTAAAAACAAATTTCACATGAATACAATGAGTAATTATCTAAAATTTAAAGTACCCTGAAAACATTAATGTTTATCTCATTATTATGTAATATGGAAATTAAAAGGCAAA---AAAATCCAAAGA--CTTACTGT-TTAAATATAATTGAAGTTTTTTATATGATGAAGTGCTCCATAATTTAAATGTAAAAAACCAATAGGAAA-TATATGAAATAAAATAAAATTATACGTAAAAGTGACAATGCCTCTATTAGATTTAACAGTATCTTACAA-TAGAATAAGTTGAAACCTACAAAATGGAAGAAAGTTTAAAATTAGGCAGATATTATCAGCCTGGTG-AAGAATAAATACATATG-TCAATAA-GCATTTAATGTATTTTGTCTTAGATTTTACATGAAATAATAAAAAGTAAGCAAACCAATAGCATGGTAGTTTCACCCTGATTGATTCAAACTGAAAAA s panTro1.chrUn_random 63369680 929 + 240967748 ttaccttgttggacagtttctatttatataaggttgttggctacttctgattggttgagcttcatttctcttttttaaatatgcagctacaagaaataatttaagttttgtttgtatttgcaaatcaagcaaggttgagatcacttatgagacctaactaattttgtctgctctgagattattgagacatgatttccattttaatttcctttaacaAATTTTCTGTACTTTTACTTTCCA-TCCAAACTGTAACTTATAAATTATTATTGTTATACATATGTTGGCCCATGTTGTGTATGCTTTGAAGACATGTTGTGCATTCAAACTCATCTGTATTATGTTATTATTGAATTTGCCCCATTTATCGGAATTATAAACTGCAATCCCCCAACTACAAGAGGTATGAGCTCTGATG-AGATAAGAGTAAAGATGAATCCAGAAGT-----------GAAAACAGTCCTCCAACCCACACATGCAGTAAAAACAAATTTCACATGAATACAATGAGTAATTATCTAAAATTTAAAGTACCCTGAAAACATTAATGTTTATCTCATTATTATGTAATATGGAAATTACAAGACAAA---AAAATCCAAAGA--CTTACTGT-TTAAATATAATTGAAGCTTTTTATATGATGAAGTGGTCCATAATTTAAATGTAAAAAGCCAATAGGaaa-tatatgaaataaaataaaattatatGTAAAAGTGACAATGCCTGTATTAGATTTAACAATATCTTACAA-TAAAATAAGTTGAAACCTACAAAATGGAAGAAAGTTTAAAATTAGGCAGATATTATCAGCCCAGTG-AAGAATAAATACATATGTTCAATAAGGCATTTAATGTATTTTGTCTTAGATTTTATATGAAATAATAAAAAGTAAGCAAACCAATAGCATGGTAGTTTCACCCTGATTGATTCAAACAGAAAAA s canFam1.chr1 17857288 743 - 124897793 ttattttgttg---------taattatttaa--------------------------aattttatttttct-------------------aaaaaaaaat---------------------aaataaaataaa----------------------------------------------------------------attttatttttCT-----GATCCTTTTGTAACTATATCCCCAACCCCCAAATATAACTTGCAAATTGTAATTTTTGTACATATGTGGGCATTTGTTTCATATAATTTGAAGCCATGTCATGGGTTCAAATTGATTTGTAATATACTATCATTGAA-TTGCCCCACTCATTGGGATGATTAACTGCTATTCCCTTCCTATAA----TAAGAGCTACGAGGCAGAGAAAAGTCAAGGTGGAA-ATAAAGTAGACGTAAAAAGAAAGCAGCCTCCTAACCCACACCTGCCAT-AAGACAAACTCCATTTGGATAAA--------------------CAGAATACATGAAAAGCATT----TTTATTTCATCACT-TGTAATAGGGAAATCATGAACCAAACATAATACCCAAAAATGTTTATTTTCTTACataaaattatatatatttatttGATGAAAGACTGCATGATCTCAGTGTAAAATACAAATAGGAAACCATGTAAAATAAAAT----CTATA---AAAAATG--AGTATCTACATTAGTTTTAATATCCTCTCATAAGCAGGATAACTTGAAATTTATAAAATAGAAGAAAATTTTAAATTAGGCATATAATATGAGCCAGCTGTAGGAATAAATACATATGGTCATTAA------CAATATATCTTGACTCAGATTTTATATAAAATAACTGAA-----------------CATGGTGACTTCACCATGAGTTCATCAAACTGAACAA a score=1492.0 s hg17.chr7_random 206844 16 + 778964 ATATTAACATTTCTCC s panTro1.chrUn_random 63370609 16 + 240967748 ATATTAACATTTCTCC a score=2766.0 s hg17.chr7_random 206860 20 + 778964 ATGAGAAGTTGGATTCATGG s panTro1.chrUn_random 63370625 20 + 240967748 ATGAGAAGTTGGATTCATGG s rn3.chr1 49122117 19 - 268121971 ATGGGAAG-TAAATTCGATG a score=13327.0 s hg17.chr7_random 206880 87 + 778964 ATTGGCCTC-ATGC-TGCATTCAAGGCACTTTAGCCAGGATCCAACACTCATTGCCA------AGAGTCAGCAGGCTAGAAGTTTGCTTTTAAGA s panTro1.chrUn_random 63370645 87 + 240967748 ATTGGACTC-ATGC-TGCATTCAAGGCACTTTAGCCAGGATCCAACACTCATTGCCA------AGAGTCAGCAGGCTAGAAGTTTGCTTTTAAGA s rn3.chr1 49122136 92 - 268121971 ATAGGCTCCAACGCATGTATTCAA-ACACTTTGACCAGAAT--AATGTTCTTGGTGATATAAGAAGGCCAGAAGGCTTAACATTTGCTCTTTGGA s canFam1.chr25 14118194 92 - 54436876 ACTGACACA-ATGA-CACTGTCCAGGCACTGTGGCCCAGACCCTGCCCTCATTATCA-CTTTGGCAGACAACGGGCCTGAAGTCTGTTCCCATGA a score=5581.0 s hg17.chr7_random 206967 57 + 778964 TGTT-CCCCGGCCTGCGACCAAGACGCTTTTTCCTGACTACTTCTTCAAC--TCTGACAT s panTro1.chrUn_random 63370732 58 + 240967748 CGTTCCCCCGGCCTGTGACCAATACACTTTTTCCTGACTACTTCTTCAAC--TCTGACAT s canFam1.chr25 14118286 59 - 54436876 TGTT-CCCTGGGCTGCCTCTAAAACATGTAGACTGGGCCATGTCCTAATCCATCAGGCAC a score=86528.0 s hg17.chr7_random 207024 761 + 778964 AGGTTTTGC----TAATATAAACGCAAACCCG-GCTCTATACCTACCAAGTATCTACTTGGCTAGAGCTGCAAATGGAGCA-TTTAGGCACTAGGCAAGAGCTCTTCCCACGTTTCCAAGCACACTTTCTAGAATTTCCCAAAACTACTGACATTG---TCTTTCAGACCCCATCTCCCA-AAGAGAATCAGAGAGATGGTCTGGAAGCCATTTAGAATCTCCAGCCTCCAACCTAGTAACAATGGACTTGGATACAAAGACGCAACCTACTGACCTCAAAGACACCAGCCCAGATTCTGGGCATTGAATTCCTGCCTCCCCATGAAAGATCTCAACTGAGTCACATCAAAACCCACACTCTTCTTCAAGGTTCACCTTCCAGACACGCTCCAAAACAGTCCCTCAGAATTGTCT----TGAG---ATGAAACAAAAGGTGATGAAGGTCCAGGTTTGGAATGCCTGCCTCATTCTTCACTCCTGAAAAGTCTACACCTGCTGGTTAGCACTCTCATATGTTAGGGAGCCCGGGCTCT--------GAGTGCATCCTTTAACAGGACCTCCTGGCCTTTTCCTACTTGGAGTAGAGTGCCCAAGAATAA---------------TAGGGAATACAAGGCCTCCACTCTCACATGGCTTGATTG--ACTGATGAACTGATGTCGGAGGAGGAAACATATGTAGGGAACAGCCTGGGTCTTGTGAATCC--GTTTCCC--AGCTATGATGCCTGTGCAAATGGAGGGAGAATCGTCAAGTATTATT---GGGTGGTAGACAGACACTGCCTA s panTro1.chrUn_random 63370790 766 + 240967748 AGGTTTTGC----TGATATAAATGCAAACCCG-GCTCTATACCTACCAAGTATCTACTTGGCTAGAGCTGCAAATGGAGCA-TTTAGGCACTAGGCAAGAGCTCTTCCCACGTTTCCAAGCAGACTTTCTAGAATTTCCCAAAAATACTGACATTG---TCTTTCAGACCACATCTCCCA-AAGAGAATCAGAGAGGCAGTCTGGAAGCCATTTAGAATCTCCAGCCTCCAACCTAGTAACAACGGACTTGGATAAAAAGATGCAACCTACTGACCTCAAAGACACCAGCCCAGATTCTGGGCATTGAATTCCTGCCTCCCCATGAAAGATCTCAACTGAGTCATATCAAAGCCCACACTCTTCTTCAACGTTCACCTTCCAGACACGCTCCAAAACAGCCCCTCAGAATTGTCT----TGAG---ATGAAACAAAAGGTAATGAAGGTACCGGTTTGGAATGCCTGCCTCATTCCTCACTCCTGAAAAGTCTACACCTGCTGGTTAGAACTCTCATACCTTAGGGAGCCCGGGCTCT------CAGAGTGCATCCTCTAAAAGGACCTCCTGGCCTTTCCCTCCTTGGAGGAGAGTGCCCAAGAATAA---------------TAGGGAATACAAGGCCTCCACTCTCACATGACTTGATTG--ACTGATGAACTGATGTCGGAGGAGGAAACATATGTAGGGAACAGCCTGGGTCTTGTGAATCCCTGTTTCCCCAAG-TATGATGCCTGTGCAAATGGAGGGAGAATCCTCAAGTATTATT---GGGTGGTAGACAGACACTGCCTA s rn3.chr1 49122259 718 - 268121971 AGGTTGTGC----TCACAAAAATGCAAACTCG-GTTTTTGAAATGCCAACTATGCATGTGTCTAG-TCTTCAGAGCGAACACTCCAGGCACAAGGCAAGAAACTGTCTCCATTTTACAAGCAGAC-TTCTAGAATTTCTTAAACATACTAACATTTGCCCCTTTCATGTTTTACCATCCA-AAGAAAAGCAGAGGGGAAATTTGGTAACTGGTCAGACTAAACATC------TCTAATAA-AATGAACGAGTGCCCAGTTGTGCAATCAA--AATTTCCAAAAGAACAGCAGGCAAT-TGAGCATTGGCATATAGCTTCTTCATTACGGTATTCCTATAAACC-TGCTAAGACCCATGTGGTCCTTGGAGA--------------------------AGTCCTTCAAAATTATCTTTGGTAAA---ATAGGGTAAGAGCTGGGGAATCTCTGTGTTCAAAATCAACACCTCAT------CTTCTTACAAG-----------AGGTCAGAATCTTCACAGGGCAGAGAACATAGCTCATGTGT--CAGTATGGTTCACTTTA-AGACTCATCTGGTTTCTTCCTCTGAGGGGTA------CCTACAATCAGGAGATGCTTGGTGTTAGGGAATACTCAGTCTGAAGCTTCATAGGATTTAGT------TAAGGAATCAATGGTCTAAAGGGAAAGAT-TGT-GGGAGCTGTCTGTGCCTAGTGAGCCA--GTTTCCCC-AGCTGTGGTGGCTGTGCAAACTGTGGAA----CATGAAATGACATA---GAGCACTAGACAAACATAGTCTA s canFam1.chr25 14118345 749 - 54436876 AAATCTAGTGTCATGATGTAAACTCAAACCTGAACTCATGGCCTGCTGCGTGGACACTGGGCCAGGATTCTAAGCTCAGCC-TCAAGGTATCAGGCAAAAGATCTGACCAGATGTCCATCTGGACTCCCCATAAGCCCCCAAATAAACTGAGACT----CCTTCCCTTCTAGATCACCCAGGAGAGCCTCAGAGACCTGATTTGGACACTGTTCAAACTCTCCACTTTCTA-TCCATTACAACTGGACTTGGACCAAAGGAAAACCCCACATGACCAGGAAGATGGCAGCTGAGGTTCTGAGCAC----------------------AGACTTCATCTGAATGCCGTCTCCACCTGCACTGGTCCTCATTCTTCACCATCCAGCCATGTTCTAGGCCAATCCTTCAGAATGGTCT----TCAGCACAGTAGACGGCGATTGATGAAGCTCCAGATTCATAGCAGCT--CTCATTCCATCCACCTGAGAAGCATACACCTCAATTTCAGACGCCTCAGTTTTTCCAGA-TGCTGTCCCTATGTCCCCTTTAGTGTCCTCTGTGAAGACCT-CTGGTGTCCCCCT-----GAGAAGAATGACTGGGAGGGA---GACCCCTTG---CAGGATGTGAATGCATCCTTGTCTCATGTGACTTGGAGGTTATTGCTGCATCGAC-------AAGGACAAAGATGTAAGAGGCAG-CTGTTTCTGGTTCTGCAGTGCTTCTCC-AGCT-TGGCATGTGTGCAGATGCTGGAA----TCCCAGACAGCACTTCGGGGACACATGCAGACACCACATA a score=5074.0 s hg17.chr7_random 207785 57 + 778964 ATAAAATTAAGTAAATGTAAGGTGACTTGAAGGGGAATTTATCATATGTCATATACA s panTro1.chrUn_random 63371556 57 + 240967748 ATAAAATTAAGTAAATGTAAGGTGACTTGAAGGGGAATTTATCATATGTCATATACA s rn3.chr1 49122977 40 - 268121971 ATTAAATTAAT---ATGTA---TGAACTGAATGACTAT------GATGTCA-----A a score=16008.0 s hg17.chr7_random 207842 135 + 778964 AAATTTTATTTGGTCAACTTTATTTAAAAACAGTCACAATT---TGTAAGGGCATTCAAATATAATTTTAATAGGGAGCTATGAAAATTATCTGCACTTGCTATGTAAGTGATTGAGTTAGGGGTAAC-TATCTGAAGG s panTro1.chrUn_random 63371613 135 + 240967748 AAATTTTAGTTGGTCAACTTTATTTAAAAACAGTCACAATT---TGTAAGGGCATTCAAATATAATTTTAATAGGGAGCTATGAAAATTATCTGCACTTGCTATGTAAATGATTGAGTTAGGGGTAAC-TATCTGAAGT s rn3.chr1 49123017 113 - 268121971 AAATTGTA-----------TTATAAGGAAACAAGTAGAATT-----GAAAAATATTAAAGT---ATTTTAATAGAAATC-AAGAAAGTAACCTGT-----TTTTTTAAAGGACTGAATAAAGACCACTGTATTTGAAA- s canFam1.chr25 14119916 133 - 54436876 GAACTATTTTTAATTAGTTTTGTTAAAAAATGAGTCAAGTTGTGTGAGTAGGTTTTAAACTATAATCTAAATAGAATACTAT-----TAATCTGCATTTGGTCTGCAAATGATTACATTTTGATAAAA-TCCGTGAAAG a score=16005.0 s hg17.chr7_random 207977 151 + 778964 TCATGAGCTTGATATCTGCTACTTAATTTCATA-----AGACATTTACTTGCAAATGGTTGCCATTTTTGCTCTCACTATATGAAAATTTTTTCTTGCAA--------AGAGCATTCCTATGAAAGAA-AAACTAGAAATTTTGCCAATTTCGGCTATTAAAACA s panTro1.chrUn_random 63371748 151 + 240967748 TCATGAGCTTGATATCTGCTACTTAATTTCATA-----AGACATTTACTTGCAAATGGTTGCCATTTTTGCTCTCACTATATGAAAATTTTTTCTTGCAA--------AGAGCATTCCTATGAAAGAA-AAACTAAAAATTTTGCCAATTTCGGCTATTAAAACG s rn3.chr1 49123130 126 - 268121971 ---------TGTCATCTACTATTTTCTTTGGTGTTTTTAGATATT----------------CCACCCTTGT--------------AATTTATTATTGCAAGTTGTACTAGAAGAATTATAAAAAGGAATATTCTGTTGATTTTACTAATTTGGGTTATTAAAATA a score=49148.0 s hg17.chr7_random 208128 564 + 778964 ATAAAACTGGTTTGTTTGTTATTCTTAACCAAATGCTCCTACAGATGACACATAGTACCCATGCTTTGATTGTTTTTTGTTTTTTTTTTCACCTTAGGTCAATTGCCTTTCATTTTATTTATCAAACTGTATTTACTGTAGATAGACATTGCAGTTCTCATGTGCCCTATGGATTTGTACTTTCTTAGAAGTATGAATTCTCAGGCTGAGTATATtggcttatgc-ctgtaatcccagcaatttgggaaggcgaagcaggtggatcacctgaggacaggagttcaagactagcatggtcaacatggtgaaaccccatctctctactaTTCACAGTTCACATTGTACCTTGCAATGAATATACATTTTATCCAAAAAGGCTAAAAAATAATGAAACTGgggtgggaatggctggaagtataggtgaaacaaaaatgacacatgactagcagctgttaaatctgggtgactggtctgtTAT-CTTTTTTTTGTATTATGTATACGTTTTTAATGTTCTGTAATAAAACACGTGTAGAAAATGACAAAGTTTATCTACACTTAGCTCTT s panTro1.chrUn_random 63371899 566 + 240967748 ATAAAACTGGTTTGTTTGTTATTCTTAACCAAATGCTCTTACAGATGACACATAGTACCCATGCTTTGATTGTTTTTTGTTTTTTTTTTCACCTTAGGTCAATTGCCTTTCATTTTATTCATCAAACTGTATTTACTGTAGATGGACATTGCAGTTGTCATGTGCCCTATGGATTTGTACTTTGTTAGAAATATGAATTCTCAGgccgagtatattggcttacgctctgtaatcccagcaatttgggtagccgaagcaggtggatcacctgaggacaggagttcaagactagcctggtcaacatggtgaaaccccatctctctactaTTTACAGTTCACATTGTACCTTGCAATGAATATACATTTTATCCAAAAAGCCTAAAAAATAATGAAATTGgggtgggaatggctggaagtataggtgaaacaaaaatgacacatgactagtagctgttaaagctgggtgactggtctgtTATCCTTTTTTTTGTATTGTGTATACATTTTTAATGTTCTGTAATAAAACACTTGTAGAAAATGACAAAGTTTATCTACACTTAGCTCTT a score=22383.0 s hg17.chr7_random 208692 137 + 778964 AAGGTCTTGGTTACCTTT--------GGGAAGGAGAAAGTG----TCAAG-GGCATGAGCAAATCTGAT------TCTTACATACACAAGTGTATTTATTTAGTAATAATTCATCAAGCATTCCATAAATATTTTGTTCCTATATTGCTGTATGCA s panTro1.chrUn_random 63372465 137 + 240967748 AAGGTCTTGGTTACCTTT--------GGGAAGGAGAAAGTG----TCAAG-GGCATGAGCAAATCTGAT------TCTTACAtacacaagtgtatttatttagtaataattcatcaagcattccataaatattttgttcctatattgctgtatgca s canFam1.chr35 21419608 156 - 29506910 aATACATCGGTTACCTTTGTGACAGAGGGAGGGGGAGAGTGATTATCAGGAAGCCTGAACGAAGCTGGTTCAAGCTCTtggctatacaagtgtattcagtctgtaataattcactgagctttacatgaattgtgtctgcatatatttctgtatgca a score=1724.0 s hg17.chr7_random 208829 21 + 778964 AGTTATTCATCAATAAATATT s panTro1.chrUn_random 63372602 21 + 240967748 tgttattcatcaataaatatt a score=89213.0 s hg17.chr7_random 208850 603 + 778964 TAAATAGTACATATTTGCATAACAATCCTAAATTAATATTTTAGAATAATAGTAATGTTTTGTTTTGTTTTA-------AAGTGGGGCGTGTTCTCTCAGGACATCGTCAGGTGTATATTAATGTT-CCAAGATATTTATTTACGTTTTAACTTTTGGAAGAGTCCCCTAGGTCTTTTAATTTTTACCTCAGTACAGTAAGTAGCATGGTTTTAACTTTTTGGATTGCAGCTTTGTTTT--CAGAAAGGTTCTC---CCCGAAGAATGATGCTCACCCAGGCCAGCGCACACAGCACAGTGACCCGTGCACAGGATGCACTGAGCACACACGGCACTGGGTGAACCATGAAC------AGAAGGAGAAGCCAGCCTGGGTCTGCAAAATATACTTTGCAGG-AAAAGCAGGTAAAATTGAAAGGTCACAATTCAGCAGCAAACGTTTTTACA-TTCATTTGAGAAATCATTTCTAACAA------------AAGCTGCTCGTTAAAGCCAtggttttctggcttgcctacacattgtaatcacctgcacaactttcaaccgtatttttttcagatccagctccaaggattctgatttagttgtgcggttacaacttgggtttaagggattttgaaa s panTro1.chrUn_random 63372623 604 + 240967748 taaaTAGTACATATTTGCATAACAATCCTAAATTAATATTTTAGAATAATAGTAATGTTTTGTTTTGTTTTA-------AAGTGGGGCGTGTTCACTCAGGACATCATCAGGTGTATATTAATGTTACCAAGATATTTATTTACATTTTAACTTTTGGAAGAGTCCCCTAGGTCTTTTAATTTTTACCTCAGTACAGTAAGTAGCATGGTTTTAACTTTTTGGAATGCAGCTTTGTTTT--CAGAAAGGTTCTC---CCCGAAGAATGATGCTCACCCAGGCCAGCGCACACAGCACAGTGACCCGTGCACAGGATGCACTGAGCACACACGGCACTGGGTGAACCAGGAAC------AGAAGGAGAAGCCAGCCTGGGTCTGCAAAATATACTTTGCAGG-AAAAGCAGGTAAAATTGAAAGGTCACAATTCAGCAGCATATGTTTTTACA-TTCATTTGAGAAATCATTTCTAACAA------------AAGCTGCTCATTAAAGCCAtggttttctggcttgcctacacattgtaatcacctgcacaactttcaaccgtatttttttcagatccagctccaaggattctgattgagttgtgcggttacaacttgggtttaagggattttgaaa s canFam1.chr35 21420185 617 - 29506910 TAAATACTACATATTTGCATAAAAATCCTAACTCTATATCGCAGAATAACAGCAGCATTTTGTTGTGTTTTGTGTTAACATGTACAACATGTTTGCTCAGGGCATCGTCAAGTGGATTTTAATATT-CCAAAGTATTACT----GTCCTAAACTTTGGGTGAGTTCCTAGGGTCTTTCTATTTTTGCTTCAATTTGGTAAGTCACATGGTTTTGATTTTTTATGATGCATTTTTTTTTTTCCAGAGAAGTCCTCATTTCCAAA----GATGTTTACCAGCACCAGGACACCTAGCGCAGTGCCTTGCACGTGGTATACACC--ATACTCGTGTAGCTGTGTGGA-CGGGAACCAACCTAGTACAAGAGGCTTGTTTG----TGCACAGGAGAGTGAGCAGGTGATGGTAGATAAGACCGAAAGGTTAC-ACTCACCGGCAAACATTTTTACACTTTATTTAATCCACTATTTGCAACTAGTTGACCCAGTGATGTTGGT--TTAAAGcagtgctgttcagccttggtcagacactgtgatcacctgaagagctctaaaaatgctgatgcccaggtcccactccagggatttggatttgattgatctgttgtaatttgggttctgggaatttcaGCA a score=2652.0 s hg17.chr7_random 209453 29 + 778964 gttttcctccccgcaggtgattctcttgc s panTro1.chrUn_random 63373227 29 + 240967748 gttttcctccccgcaggtgattctcttgt a score=28100.0 s hg17.chr7_random 209482 206 + 778964 gccaggggtaagaagcgctgGATAGGGGTGAGGGATGCTTTAGCTGTGAGAGATAGCCATGTACGCTTCAGGATTTGCCCCATCACATATCTGGAGTTCAGGGTCTTAGAAAATATTCTTGCCCTGTTAAAAATTAAAGGATGGCTTCA-ATACAAATTTAGCTATTTGGCTACGTTACAGAAAAAGAAAATGCCTTTCCAG-AGATC s panTro1.chrUn_random 63373256 206 + 240967748 gccaggggtaagaagcgctgGATAGGGGTGAGGGATGCTTTAGCTGTGAGAGATAGCCATGTACACTTCAGGATTTGCCCCATCACATATCTGGAGTTCGGGGTCTTAGAAAATATTCTTGCCCTGTTAAAAATTAAAGGATGGCTTCA-ATACATACTTAGCTAGTTGGCTACGTTGCAGAAAAAGAAAATGCCTTTCCAG-AGATC s canFam1.chr35 21421016 172 - 29506910 GCCCGTGGTGAGGACCACAGATTCAAGGCCAGGGATGCATCTGCTGTAAGTGATG--TGTGTGCGC------------------------------TCTGGGGTTTTAGAAAACAGCTCTGCCCTGTT-AAAATCAAAGGACTACTTCAGATA---ACTCAGCTATTTGTCTAAACTACAATAGGAGGAAATGTCTTCTTAGCAGATC a score=25525.0 s hg17.chr7_random 209688 298 + 778964 AGttttttgagtcagagttttgttctgtcagtgaggctggagtgcagtggtgtgatcatggctcactgcagccttgacctcccaggctcaggtgatcctccagctccagccttctgagtagctgggactgaaggcatacaccaggcatggctaatttttcaatttttttttttgttgttgttgttgagatggctttctctatgctgcatgggctagtctcaaactccttgcctcaaatgatcctcccacatcagtctcccaaacatttcaacctacaggcacaggcaaccatgcctgg s panTro1.chrUn_random 63373462 296 + 240967748 AGttttttgagtcagagttttgttctgtcagtgaggctggagtgcagtggtgtgatcatggctcactgcagccttgacctcccaggctcaggtgatcctccagctccagccttctgagtagct-ggactgaaggcatacaccaggcatggctaatttttcaattttttttttt-ttttttttgtggagatggctttctctatgctgcctgggctagtctcaaactcctggcctcaaatgatcctcctacatcagtctcccaaagagttcaacctacaggcacaggcaagcatgcctgg a score=3757.0 s hg17.chr7_random 209986 29 + 778964 TGTATTTATTAAaatgtagctactagaat s panTro1.chrUn_random 63373758 29 + 240967748 TGTATTTATTAAaatgtagctactagaat s canFam1.chr35 21421188 27 - 29506910 TATCTTTATGTCA--GTTGCTTTTAGAAT a score=22575.0 s hg17.chr7_random 210015 155 + 778964 atttaaaatt-cacatgtgcctcacatattatt-----------------tctTAGAGAATTGCCTCATTTTTGAAATCTCAGGCTGCCTGCTCTAAAACCTGGATGTGCCAGG-AAG--TAAAAAATCTGAAATTTTAAAATAAT-TGTCATTATATTGCTTCCATGTATGAATAA s panTro1.chrUn_random 63373787 156 + 240967748 atttaaaatt-cacatgtgcctcacatattatt-----------------tctTAGAGAATTGCCTCATTTTTGAAATTTCAGGCTGCCTGCTCTAAAACCTGGGTGTGCCAGGAAAG--TAAAAAATCTGAAATTTTAAAATAAT-TGTCATTATATTGCTTCCATGTATGAATAA s canFam1.chr35 21423005 173 - 29506910 atgtaaaactacagacgtggctcacctcctgtttctactggacaTTCCTGTCTGAGAGGACTGCCTCCTTTTC-AAAGCTCGGGGTGCTTCCTTGGAAGAGCAGA--AGCCAGG-AAGGTTAGAAAATCTGAAGTTTTAAAAGAATCTGGCATTTTACTGTCCCCATTTGTGAATAA a score=32970.0 s hg17.chr7_random 210170 388 + 778964 CACATATATATTTTTCATAAATACAAATAATCTTACACACAAATGAAAATGCAAGTATTTTACAGGCAgggccagtgtccagtgcatgaaggaagccctgccagaaaaggatccaggaaaaacctataattcttgctttattcaatccagtgtcaaatcacatatgtcactcatggcctgagggggcttggtggggaattgaactatatccagtcacgggtgctggagtggaaattatctaatcaggtgcacagctggagaagaatgggcagctttttggatctagggatgcctttgcctgtctctccactcagaggtcAGTACACTAGAGCCACCTCAATGCAATTGCCTGTTTTTTAGTTGTTTTAATGCTCCAAAAAAGAATTCA s panTro1.chrUn_random 63373943 380 + 240967748 CACATATATATTTTTCATAAATACAAATAATCTTACACACAAATGAAAATGCAAGTATTTTACATGCAgggccagtgtccagtgcatgaaggaagccctgccagaaaaggatccaggaaaaacctataattcttgctttattcaatccagtgtcaaatcacatatgtca--------ctgagggggcgtggtggggaattgaactatatccaatcatgggttctggagtgcaaattatctaatcaggtgcacagctggagaagaatgggcagctttttggatctagggatgcctttgcctgtctctCCACTCAgagctcaggacactagagccacctcaatgcaatcgcctgttttttagttgttttaacaCTCCAAAAGAGAATTAG a score=49876.0 s hg17.chr7_random 210558 381 + 778964 TTTTCTCATGCATTTTCCAAATGTGTGGCAAGAAGAGCCTCAAATCTACCACCCTGTTACCCCAGCCTAACTCT------TGCTTGC-AGTCAGAGTTTAAATTTCCAGTTCTTTCCTGACACTTACCAACACTAACTAACCTTGTGTAACTCACAACATTATCAA----CTGTTCTTTATTGTACATTT----TAGACATAGTATTTTAATTCTGCAT--TTTTTCAAAAAGCAGTGGATGGCACTTAAAAAAA----TATTTTTCATTTGTAAACATTTTACAGGACATGAAAGCAGATAATAATCCCCTGACAATCCACAGTAAaaaaaaaaagaaaagaaaagaaaagaaaaTATTTGTGCCCCTTTCTTTA--ATCTTGCCTTGGCACAGACACCCCAT s panTro1.chrUn_random 63374323 380 + 240967748 TTTTCTCATGCATTTTCCAAATGTGTGGCAAGAAGAGCCTCAAATCTACCACCCTGTTACCCCAGCCTAACTCT------GGCTTGCAAGTCAGAGTTTAAATTTCCAGTTCTTTCCTGACACTTACCAGCACTAACTAACCTTGTGTAACTCACAACATTATCAA----CTGTTCTTTATTGTACATTT----TAGACACAGTATTTTAATTCTGCAT--TTTTTCAAAAAGCAGTGGATGACACTTAAAAAAA----TATTTTTCATTTGTAAACATTTTACAGGACATGAAAGCAGATAATAATCCCCTGACAATCCACAGT--aaaaaaaaagaaaagaaaagaaaagaaaaTATTTGTGCCCCTTTCTTTA--ATCTTCCCTTGGCACAGACACCTCAT s canFam1.chr20 52566684 373 + 61172541 TTTTCTCCTGAGTGTTCTAGATGTTTGGGAAGCAGAGTCTCAAATCCACGATCCTG-TGTCCCAGCCCGTCCTTTCCTGGGACTGGC-AATAAATGCTT--GTTTCCAGATCCCGCCCCGCCTCCCCAGACGCAGATTCCCCTCTCG-GATTTACAGCATCAGCGATGATTTGTCCTCCATGGTGCATTTCAAACAGACACAGCGTTGTAATTGTGTATCATTTATCCACAGTCAATGGATGGCTCGTTTTAAAAGGCTTATTTTTTATTCGTGGATATTTTACATGAGAAG-AAGCAGAGAATAACCACCTG-------------------------GAACAAGGTTGTGTGAAATCATTGTGCCCCTCTCCCCAGGATCTTTCCTGGGCACAGACATCCTGT a score=56407.0 s hg17.chr7_random 210939 626 + 778964 CAGAATGTCTTTGGGTTGAGGTTTCATTTCAGAAACCTCACAGGGCAATACATCCTCAGCCATCCTGTGTTATTTTCTTGGTTTTGGGTTTCAAAACTGCTTGAGAATCCCCAAGATACCAACACTGGCCATGACTCTTGAAGTGTCTAGTAAATAGCATCCCTTGTGTCATCTCCTCTCAGGGAACAGCCCAAGGTATGGGAATGCAGCCTCTTTTTGGAGTGGTTGGATGCACTATACCTGGAAGGAATCTCCACGTATACCTTTGCGTTAAAAGCAAACCTCTTAGGACATTAAGAATTTCTTACCCCAACGCTTAGTTTCCATTCCTTAGAGACACATTGCAGGCCAGGCAACTGGATGCTGATATTGAGGAAAAAATGTCCTCAGATTGGTG-AAGGGAGAGAAAATATTTCAAAGGATAAAGAAACCCAACCTAGTGAGGCAGTGCAAAAACCTGCAAAGTAAAATGCACCTTACAGACACAGTGGAGCAGAGCGTAGCAGCTCCTGGTAGGACGCTCATGACCCACATCACTGAACCAGATAGGAGCAGGGAAAATATCCCAAGTAATAGAACGGCTTGACTTGACCCTTGGGTCAGATATGTCTGTGTTTCAATCAGCA s panTro1.chrUn_random 63374703 627 + 240967748 CAGAATGTCTTTGGGTTGAGGTTTCATTTCGGAAACCTCACAGGGCAATACATCCTCAGCCATCCTGTGTTATTTTCTTGGTTTTGGGTTTCAAAACTGCTTGAGAATCCCCAAGATACCAACACTGGCCATGACTCTTGAAGTGTCTAGTAAATAGCATCCCTTGTGTCATCTCCTCTCAGGGAACAGCCCAAAGTATGGGAATGCAGCCTCTTTTTGGAGTGGTTGGATGCACTATACCTGGAAAGAATCTCCAGGTATACCTTTGCATTAAAAGCAAACCCCTTAGGACATTAAGAATTTCTTACCCCAATGCTTAGTTTCCATTCCTTAGAGACACACTGCAGGCCAGGCAACTGGATGCTGATATTGAGGAAAAAATGTCCTCAGATTGGTGAAAGGGAGAGAAAATATTTCAAAGGACAAAGAAATCCAACCTAGTGAGGCAGTGCAAAAACCTGCAAAGTAAAATGCACCTCAGAGACACAGTGGAGCAGGGTGTAGCAGCTCCTGGGAGGACGCTCATGACCCACTTCACTGAACCAGATGGGAGCAGGGAAAATATCCCAAGTAATAGAATGGCTTGACTTGACCCTTGGGTCAGATATGTCTGTGTTTCAATCAGCA a score=38802.0 s hg17.chr7_random 211565 283 + 778964 TTGTCACCTTCTAATTTTGTCACCTT-GAAAATATGATTGTATT---TATTTTAACTTCACTTTTTCATTAACTGTAAATTATGTTTTATCAGTAGAGCTTCAAAGGTATGAGAATATTTATAAAGC-ACATTAAGTTGGTGAATTTTG--------AATAAAATTAAGTAGTAATATATTTCATTTGTTAAAAATTGTTACTTACCTATTTCTTCAGCAGAATGAGCGTAGCATGTCTCCCAGGTCTGTTTTTTATTTGTTTGAGAGGTGATTTCAAGCAGAATCTCACAGCTTA s panTro1.chrUn_random 63375330 284 + 240967748 TTGTCACCTTCTAATTTTGTCACCTTCGAAAATATGATTGTATT---TATTTTAACTTCACTTTTTCATTAACTGTAAATTATGTTTTATCAGTAGAGCTTCAAAGGTATGAGAATATTTATAAAGC-ACATTAAGTTGGTGAATTTTG--------AATAAAATTAAGTAGTAATATATTTCATTTGTTAAAAATTGTTACTTACCTATTTCTTCAGCAGAATGAGTGTAGCGTGTCTCCCAGGTCTGTTTTTTATTTGTTTGAGAGGTGATTTCAAGCAGAATCTCACAGCTTA s canFam1.chr20 52567109 276 + 61172541 TTGTGCCTTCGTGGGTTTGTCACGTT-GAAAACA----TGTATTCCCTCTTTTAAAGTCAGTTTTGCAATAAATGTAAAATGTATTTAATCCATAGGTCTTGAAAAAC---AGTGTATTTCCAAAGCGGCAAGAAAGAGGAGAATTCTGGGGCAAAAAAAAAAAAAAAAAAGTGTTACATTGCATATGCTAAAGTTTTTTGTTTCCCTTTTTCTTCCCCTG-------GCAGGATGTTTCTGAGATCTGTTCCTTACTTTT-----GGGTGATGTAAAATGAAATTCCAGAGCTTA a score=69925.0 s hg17.chr7_random 211848 796 + 778964 CTGTTGGAAATGCTATCAGTTGTAAAGATAGGGATAGTATCTCTTCCACTACGGTGGTAGGAAATGAATACATATCTGCAAGCACATGAGGTAGATTAATTGTCAAATTACATAAATTTATCACATAAGTTATTCTTTTTTTCAAAAGAGAGAACTTGTGAAAGTGAATAACTCTATTCCATATGCTGCCATCTGGGTGTTTGAGGGTAATGTTAAGTTTTAGGAGCTGGGACTTTGCGCCTCCTGGAAGTGTTCACATATGATTAATTGTttactaaatgatttgttatgaacataattaaattacatgtttattttctgaaagggatagatac-tttggcttttcttgatgaattataagatataagccccttataatgtttttattttattttattct--gttattttttagatgtagtttcactcttgttgcccagactggagtacaatggcaagacatctgctcactgtaacctccacctcctggtttcaagcgattctcctgcctcggcctcccgagtagctaggattacaggcatacaacaccacacctggataattttgtatttttagtagagacggggtttc-ttcatgttggtcaggctggtctcaaactcctgatctcaggtcatctgcccacctaggcctcccaaaatgcagggattacaggcatgagtcacaatgcccggctgtaatttcctctcttttataccttagatttgaataatttttgctggattcttcaaacatgaagtattttttgaattgaaaactaactgaatgacta-actggtaag s panTro1.chrUn_random 63375614 800 + 240967748 CTGTTGGAAATGCTATCAGTTGTAAAGATAGGGATAGCCTCTCTTCCACTACGGTGGTAGGAATTGAATACATATCTGCAAGCACATGAGGTAGATTAATTGTCAAATTACATAAATTTATCACATAAGTTATTCTTTTTTTCAAAACAGAGAACTTGTGAAAGTGAATAACTCTATTCCGTATGCTGCCATCTGGGTGTTTGAGGGTAATGTTAAGTTTTAGGAGCTGGGACTTTGCACCTCCT-GAAGTGTTCACATATGATTAATTGTttactaaatgatttgttatgaacataattaaattacatgtttattttctgaaagggatagatacttttggcttttcttgatgaattataagatataagccccttaaaaTGtttttattttattttattctaagttattttttagatgtagtttcactcttgttgcccaggctggcgtgcaatggcaagacatctgctcactgtaaactccacctcctgggttcaagcgattctcctgcctcggcctcccgagtagctgggattacaggcatacaacaccacacctggctaattttgtatttttagtagagacggggtttctttcatgttggtcaggctggtctcaaactcctgatctcaggtcatctgcccgcctaggcctcccaaaatgcagggattacaggcatgagtcaccatgcctggctGTAATTTCCTCTCTTTTATACCTTAGATTTGAATAATTTTTGCTGGATTCTTCAAACATGAAGTATTTTTTGAATTGAAAACTAACTGAATGACTAGACTGGTAAG a score=10018.0 s hg17.chr7_random 212644 128 + 778964 tagaagtcttagaccatcgactaaaagctaaggcccaccttgacccagcaaaagaggaccactgaaggctcagttgattattcctgggtgtctgccctgcaggtgtccaagcctactcacaccaatca s panTro1.chrUn_random 177283783 128 - 240967748 tagaagtcttagaccattgactaaaagctaaggctaacgttgaccctgcaaaagggggccactgaaggcccagttgtttattcctgggtgtctgccctgcaggcgtcaaagtctgctcacaccaacca a score=278137.0 s hg17.chr7_random 212772 3174 + 778964 tggaaggagcctttgtcactgccagaagatatagagccttggtaagctggaagttcacaggcagatgcagttgaggtagagatagaagaaatgttgggagattctttttagaatggaattgttattgtcctcagactgtttctagacttggtCTAAGAAGTTACCTAAgaagtattgcaacaaagaaaaagtacaaatgattagatctttgagtatctctaaggttaggtggaaaaaggccttatttcatagggaggagaaaacaagtttacaaagaaggtt-ggaaaggaagcacaggatggagggtagcaaaatgagatcccagataagataatgtttcaccttgaactcagcctgttcttaggagggttacgtataaataagggttgtaggtttgctgaagctgtgggtgagtcaaagttcaggggctgtttggaagaagagaaacaagcaaagtttctgtaaagagtatgttattttgaccactgaagactaaattactgaatggttgttcatttttaaaaatgggaatttgcaatctgtgtccatttttgtgataggttaaaaaaacagcagggagcatcctcaaagtcatcacgggaagcacgtttctcttcactaagctgttctttgagaatgcaaagaatgggggaatttctttaaatatagctatttccaggaTTACCTTCACCCACAACTGTTccttgccctagacatctcttccatttggctgtttctgagttatatttttataataaagtagtaaatataattacagttatttgttgaggttttctttttagtaattctatcaaattatttaacttgaaaaggggtttatgctagtctcagatttataggaggtagctcagaagtgtagatgggtttcagggatgtgtaactctcctctacagtgagagaggtgatgtgggactgagccctgaatttgtggggtctgtgcgaactctaagttgtgtcagaattaaattttggggcaacaaatgggtgttggagaatcagtgggttttcagggaactttccacatttaggatcaaaaacat---aaaaagaaagacaatgtgggggcctctgctggagagagactccaggtgtctcggggaaggtaggctctgctctgcacacaggctgctacaccatgaactgccctgtggttccaggcatcctcccatggtaagaaggaccgacgactctgagggaagaagttctgagaacagatgccttctaccctcctgccaacctgaggccaccacatgtttttcacccactgaacatacacactgcatgttgacgtggtcaagcccctcccagcacagggcttcggcataaagattgtggcccatgctacctatcctcatagactttcccaccaaaaacccacacacgtgcctacaagacccctggcatatgctctacctcagacaccgaatctgcaggggcaacctggttttttcaccatcccaggtttctgtgccacctgatcataatctcgtcttcctgcatggacacagaaataagtcagagtaaagtttcacctgggtcagtatctgtagcatgaaccagtccttccaccaaccctgtaatgtctcccaATTGTGGGTTCTTAATAGCACCT-TCCCCTCTTTTACCTTTTAGTTCACCTCAAACCTTTTATTT-ACGTGCACTTAGTGTGTCCAAGCCACCCCTCAGTTGCCTGAATCCAGCACCTACTAAAATTCAGATGTCCAGTAGTTCAAGACCATGGGCCTAGGCCATGTTTTTGCAGaaggaaatacatattagaaatgagaggctctatcctcccatttgaaaattaaaaaagatattttttcttttcccttttcttaaacaatgtaatttagagaactttttttagtaattttttgagatggaatcttactcttttgcttagtctgaagtgcaatggcataatcatagctcactataaccttaacttcttgggtttgagcagtcctcctgcctcaacctc-ttaattacctaggactataggcatgcacctccaggcctggctaactttatttatttatttatttatttatttatttatttatttatttattCAagacagtgtcttgctctgtgggtcaggctagagtgtagtggcatgatcttagctcaatgcaacctccgcctcccaggttcaagcaattctcttgcttcaaccttttgagtagctggcattacaggcgcacagcaccatgcctggctgattttttattgttattatttttaggagagaaagggtttcaccattttggccaggctggtctcgaaccc-tgacctcattatccacctgcctccgactcccaaagtgctggtattacaagcgtgaaccaccatgcccagccat-atttattttatttatttttttatggtgacagaatttcaccatgttgcctgtactggactcaaacatttggcttcaagagatcctcctgccttggcctccccaaatgttgggattacaggcatgaacagccgtgcctggcctggaaaacttttatatgtatcttttttt-ctctgcttctttgaaatataagcaaatcattttaacagctaaataagccttttgccac-cttcatgacacagaattgtctttgtctaagacctggaaactattgttttgTTTTTTAATTTGGCAAAGATTTATTGATTTTTTATTTTCAGTCTTTTGAAGTAGACACAGCTCAGTAcagtggctcatgtttttaatcccagtgctttgggaggctgagatgagagaattgcttgggcccaggagtttgagaccagcctgggctgcctaatgagtctccttctttataaaaaattaaaatcaactagcagggcatggtggcacaggaggctgaggtgagagaatcatttgagcccaagagtttgaagctgcaatgagccatgatcacagcactctaccactgtactccagcttgggtaacagacggagaccctgtctctaaataaataagtaaat--aaaaaaaaGTGTTTTT-CCATACATAAaaataagtaaataaacagataaataaaATAGACATGGATTTGCTGAGAATAAAGCTAATTACAAGATAA-CAGAAAAGTGAGCACCAAAGATGGGGTTCACCCTAGCAAATGATTCCAGCCTATTAGGACACTCACAGAATT s panTro1.chrUn_random 63376414 3163 + 240967748 tggaaagagcctttgtcactgccagaagatatagagccttggtaagctggaagttcacaggcagatgcagttgaggttgagatagaagaaatgttgggagattcttcttagaatggaattgttattgtcctcaaactgtttctagacttggtCTAAGAAGTTACCTAAGAAGtattggaacaaagaaaaagtacaaatgattagatctttgaggatctcaaaggttaggtggaaaagggccttatttcatagggaggagaaaacaagtttacaaagaaggtttggaaaggaagcacaagatggagggtagcaaaatctgatcccagataaga--atgtttcaccttgaagtcagcctgttcttaggaggggtatgtataaataagggttgtaggtttgctgaagctgtgggtgagtcaaagttcaggggctggttggaagaagagaaacaagcaaagtttctgtaaagagtatgttattttgaccactgaagactaaattactgaatggttgttcatttttaaaaatgggaatttgcaatttgtgtccatttttgtgataggttaaaaaaacagcggggagcatcctcaaagtcatcaggggaagcacgtttctcttcactaagctgttctttgagaatgcaaagaatgggggaatttctttaaatatagctatttccaggaTTACCTTCACCTACAACTGTTccttgccctagacatctcttccatttggctgtttctgagttacatttttataataaagtagtgtatataattacagttatttgttgaggttttctttttagtaattctatcaaattatttaacttgaaaaggggtttatgctagtcttagatttataggaggtagctcagaagtgtagatgggctgcagggatgtgtaactctcctctacagtgagacaggtgatgtgggactgagccctgaatttctggggtctatgcgaactctaagttgtgtcagaattaaattttggggcaacaaatgggtgttggagaatcagtgggttttcagggaactttctacatttaggatcaaaagcattgtaaaaagaaagacaATGTGggggcctctgctggagagagactccaggtgtctcggggaaggtaggctctgctctgcacacaggctgctacaccatgcactgccctgtggttccacgcatcctcccatggtaaaaaggaccgacgactctgagggaagaagttctgagaacagatgccttccaccctcctgccaacctgaggccaccacatgtttttcacccactgaacatatgcaccacatgttgatgtggtcaagcccctcccagcacagggcttcagcatcaagattattgcccatgctacctatcctcatagactttcccaccaaaaacccacacatgtgcctaaaagacccctggcatatgctgtacctcagacacggaatctgcaggggcaacctggttttttcaccatcccagatttctgtgccacctgatcataatctcgtcttcctgcatggacataaaaataagtcagagcaaagtttcacctgggtcagtatctgtagcatgaaccagtccttccaccaaccctgtactgtctcccaATTGTGGGTTCTTAATAACACCTCTCCCCTCTTTTACCTTTTAGTTCACCTCAAACCTTTTTTTTTACGTGCACTCAGTGTGTCCAAGCCACCCCTTAGTTGCCTGAATCCAGCACCTACTAAAATCCAGATGTCCAGTAGTTCAAGACCATGGGTCTAGACCATGTTTTTACAGaaggaaatacaaattagaaatgagaggctctattctcccatttgaaaatttaaaaagatattttttcttttcccttttcttaaacaatgtaatttagaaaactttttttattaattttttgagatggaatcttactcttttgcttagtctgaagtgaaatggcataatcatagctcactataaccttaacttcttgggtttgagcagtcctcctgcgtcaacctccttaattacttaggactataggcatgcacctccaggcctggctaactttatttatttatttatttttt------------------------caagacagtgtcttgctctgtgggccaggctagagtgtagtggcatgatcttagctcaatgcaacctccgcctcccaggttcaagcaattctcttgcttcaaccttttgagtagctggcattacaggcgcacagcactatgcctggctaattttttattgttattatttttaggagagaaagggtttcaccattttggccaggctggtctcgaacccctgacctcattatccacctgcctccgactcccaaagtgctggtattacaagcgtgaaccaccatgcccagccatcatttattttatttatttttttatggtgacagaatttcaccatgttgcgtgtactggactcaaacatttggcttcaagagatcctcctgccttggcctccccaaatgttgggattacaggcatgaaccaccgtgcctggcctggaaaacttttatatgtatcttttttttctctgcttctttgaaatataagcaaatcattttaacagctaaataagccttttgccactcttcatgatacagaattgtctttgtctaagacctggaaactattgttttgTTTTTTAATTTGGCAAAGATTTATTGATTTTTTATTTTCAGTCTTTTGAAGTAGGCACAGCTCAGTAcagtggctcatgtttttaatcccagtgctttgggaggctgagatgagagaattgcttgggcccaggagtttgagaccagcctgggcagcataatgagtctccttctttataaaaaattaaaatcaactagcagggcatggtggcacaggaggctgaggtgagagaatcatttgagcccaagagtttgaagctgcaatgagccatgatcatagcactctaccactgtactccagcttgggtaacagacggagaccctgtctctaaataaaTAAGTAAATGTAAAGAAAAGTGTTTTTTCCATACATAAaaataagtaaataaacagataaataaaATAGACATGGATTTGCTGAGAATAAAGCTAATTACAAGATAATCAGAAAAGTGAGCACCAAAGATGGGGTTCACCCTAGCAAATGATTCCAGCCTATTAGGACACTCACAGAATT a score=30640.0 s hg17.chr7_random 215946 211 + 778964 TTCCCTGCAGCATGACCGACATGAAAGTAGAATGTCATCATGTCAGGCTGTACCAGCGTTGGAAGACTAAACACTGTGGGGAAGAACCTCCCTTATGGAATATTATCAACA--GGTGAGAGCCCAGCTCCTGCCCTGATGGG-CTACAGAA-----ATGAGTTCCT-GAGATAACACATTGCAGAAACATGCATAGAGTAGTTT------AACCTTTTTTGTGTGT s panTro1.chrUn_random 63379577 211 + 240967748 TTCCCTGCAGCATGACCGACTTGAAAGTAGAATGTCATCATGTCAGGCTGTACCAGCGTTGGAAGACTAAACACTGTGGGGAAGAACCTCCCTTATGGAATATTATCAACA--GGTGAGAGCCCAGCTCCTGCCCTGATGGG-CTACAGAA-----ATGAGTTCCT-GAGATAACACATTGCAGAAACATGCATAGAGTAGTTT------AACCTTTTTGGTGTGT s canFam1.chr34 29646425 226 - 45232793 TTCCTTGCAGCACTGCAGAAATGGCAAGAGAATGGCATCAGGTCAAGTGCCAAGGGCCTTGAAAGGCTGAATCCTGTGGCAGACGGCCTCATTTATAGAGTACTATGAAGATCTATAAGGACATAGCTCATGACATGTTGGGCCTACAATAATTTGATGAGTTCTGAGAGAGGAAGCATTACAGAGAAACATATAGAAAGGCTTCATCCCACCCTTCCTTTTGTGT a score=2070.0 s hg17.chr7_random 216157 23 + 778964 AACCCTCTCACCATTTTCCTGCG s panTro1.chrUn_random 63379788 23 + 240967748 AACCCTTTCACCATTTTCCTGCG a score=168116.0 s hg17.chr7_random 216180 1699 + 778964 AAATCCTCCCTAGTAATAGTGTTAGCTTTTAAGTTTT----GAGGGTCCGATAGGAC--TGAAGCTGCATGCTGCAGGAGATACCTGGGGCCGG-----AAACTAATACAAACTGCAGCCACAGGCATAAATACTCATGGTCTAATGTAGAGTGAAA----------------------ACAATACAAAAT-TCTTTATCGTTATTCGCACAAGTGTGTGAAGAGAGACTTTCCACATAACCAAATTGCCACTGAGACTA---GTGAAGG-CCAGATTCCACTGGAACAAGG-CTATGAGTTACTCATGGGAAGGCCGTAGGACAAAGCCCAGAGATTTTTCATATTTGAGTCTGGGTCCTGGTTCTTTCCCGGTCTTCTCGGGTTTCTGTCTGTAGAGACCCCTATGTGGCTGCTCTCAGCACAGCCCAGTGCTGGCTGTGTTTGCTGGTTTAGTGCACCTGCTCTTTTTCCAAAAAGAGGGAGGAGTTG--GCCACATTAAACTGAATGATGAAGCTCCTCATCAAT---CTGAATGCAGCTTTGTAAAT---GTGCC--TAGAAACCACGCAAAGAAAAGTCTGTGTTCTGCCTTGCTTTGACCGT-ATGTGACACCTCCATTAGAAATTCTGCTTTTCTctgcactccagcctgggtaacagagtgagacttcatgataaataaaaaagaaagagagagagaaggaaagaaagaaagaaagagagagatggaaagaaagaaagagaaagaaaaa-aaagaaagaaag-aagaaag-aaaga------aagaaaagaaaagagaaaagaagaaaggaaaaaagaaaaaagaaaATAAAAGAAATTCTGCTCTTCAGATAAGGCACATAAGGAGAATCTGTATAAATCTCCATGAAGGAAGGAAACCAGAGGACAAGTTAAAGTCTTGGAATTCACATCTGAGTACACAGACTCATTCTCCAACCCTCTTCTTTTTATTCTGCCAGCTATGGCC-TAGGTATGAACATGACAGGTACACAAGAGTTCCAACACCCGACAATCTACTTCAGTCCAAGAAGAGTGCCCTCC-CTCTTGCTCCCCATCCAACTCATGGTAC-----------------------------------------TAAGAAGT-------------GGTGTGGGACTGCCCAGATGAGTTGACAAGAGAGGCTGGCTTGGAGGGGCCTGTCCTGGGCTGCCCTGTGTTATTTGTAGGTGCACCCGGCCA-ATAGCCAGGGACATCAGTGATGAGGGCTCAGTTGACATCTGTGTTATCAGATAAGACTTTTACATTGAGCCTTTGTAAGGCTGAAACTCAGAAATTTCAGGGCA-CAAT-GAAAGAGCATCTCACTCTCTTGAGCAACTCTCACAAACAGAGGTGGATACAGAGCTGTCTCAAGAATGTGGATTCCTGGTTTCTTAACTGCT------GTTG-GGTTCTGACACCAAGAAAGTGTGTTAAACTCTTCAAGGTTCCATCTACTGGGCCCTATGTTTCTGTAAGACATACCGAAAGGCCCCACTATGCTACTGATTGCTCAGTCTCCTCTTCCATGTCAACTCTTTATTTGTACACAATTATGCAAACACAACTTCCCCTTAATTCCCTGGAA-AGAC---CTAAATGCAACCTGGGTTCCAGGAGAGAAGAGACAGCTGGA---------ACATAACTTTGTTTTTcttaccatctctgggacccagtaaaagtcactgtat---tcaaggcttccccagcctcctaacatgcacagtggtgatgatgctaacatctacttcctagggaatgtgttaggtgtata s panTro1.chrUn_random 63379811 1651 + 240967748 AAATCCTCCCTAGTAATAGTGTTAGCTTTTAAGTTTT----GAGGGTCCGATAGGAC--TGAAGCTGCATGCTGCAGGAGATACCTGGGGCAGG-----AAACTAACACAAACTGCAGCCACAGGCATAAATACTCATGGTCTAATGTAGAGTGAAA----------------------ACAATACAAAAG-TCTTTACTGTTATTCGCACAAGTGTGTAAAGAGAGACTTTCCACATAACCAACTTGCCACTGAGACTA---ATGAAGG-CCAGATTCCACTGCAACAAGA-CTATGAGTTACTAATGGGAAGGCCTTAGGACAAAGCCCAGAGATTTTTCATATTTGAGTCTGGGTCCTGGGTCTGTCCCGGTCTTCTCGGCTTTCTGTCTGTAGAGACCCCTATGTGGCTGCTCTCAGCACAGCCCAGGGCTGGCTGTGTTTGCTGGTTTAGTGCACCTGCTTTTTTTCCAAAAAGAGGGAGGAGTTG--GCCACATCAAACTGAATGATGAAGCTCCTCATCAAT---CTGAATGCAGCTTTGTAAAT---GTGCC--TAGAAACCACACAAAGAAAAGTCTGTGATCTGCCTTGCTTTGACCGT-ATGTGACACCTCCATTAGAAATTCTGCTTTTCTctgcactccagcctgggtaacagagtgagacttcatgataaataaaaaagaaagagagagagaag----gaaagaaagaaagagagagatggaaagaaagaaagagaaagaaaaagaaagaaagaaagaaagaaagaaaagaaaagagaagaaaggaaaaaagaaaagaagaaaggaaaaaag--aaaagaaaagaaaagaaaTTCTGCTCTTCACATTAGGTACATAAGGAGAATCTGTATAAATCTCCATGAAGGAAGGAAACCAGAGGAGAAGTTAAAGTCTTGGAATTCACATCTGAGTACACAGATTCGTTCTCCAACCCTCTTCTTTTTATTCTGCCAGCTATGGCC-TAGGTATGAACATAACAGGTACACAAGAGTTCCAACACCCGACAATCTACTTCAGTCCAAGAAGAGTGCCCTCC-CTCTTGCTCCCCATCCAACTCATGGTAC-----------------------------------------TAAGAAGT-------------GGTGTGGGACTGCCCAGATGAGTTGACAAGAGAGGCTGGCGTGGAGGGGCCTGTCCTGGGATGCCCTGTGTTATTTGTAGGTGCACCCGGCCA-ATAGCCAGGGACATCAGTGATCAGGGCTCAGTTGACATCTGTGTTATCAGATAAGACTTTTACCTTGAGCCTTTGTAAGGCTGAAACTCAGAAATTTCAGGGCATCAATAGAAAGAGCATCTCACTCTCTTGAGCAACCCTCACCAACAGAGGTGGATACAGAGCTGTCTCAAGAATGTGGATTCCTGGTTTCTTAACTGCT------GTTG-GGTTCTGACACCAAGAAAGTGTGTTAAACTCTTCAAGGTTCCATCTACTGGGCCCCATGTTTCTGTAAGACATACTGAAAGGCCCCACTATGCTACTGATTGCTCAGTCTCCTCTTCCATGTCAACTCTTTATTTGTACACAATTATGCAAACACAACTTCCCCTTAATTGCCTGGAATAGAC---CTAAATGCAACCTGGGT---------------------------------------------------------------AACCCAGTAAAAGTCACTGTAT---TCAAGGCTTCCCCAGCCTCCTAACATGCACAGTGGTGATGATGCTAACATCTACTTCCTAGGGAATGTATTAGGTGTATA s canFam1.chr34 29647204 1549 - 45232793 AAATCATCCTCTTTAGT-GTGATGATTTTTAAGGTTTTGGAGAAGTTCTTCAGGGACAGTGGAGCTGGGTTCTACACAGGATATCTGGGACGAGTAGGTGAAATAGTAAAAACAGTAGTAAAATGTAAAGATACTCATCACTTTGTGAAAAACAAAACAAACAACCCCACCAAGCCCTCAAAACACTAAATATATTCTGCACTATTCCAACA--TAGTTGAAGAGTGTCTTCCCACCTCATCATGTGGCTG--GGGGCTAGGCGTGGAGGTTCAGATCTCTTTGCATTTGGGCCTGTGCGACACCCATGTGGCAGCACTATGGGAGGGCCCCAGGTTTCTCTCCATGTTTGTGTGGG------------------------GGGTATATTTCTGTGGAGAACCCTCTTCCCATTCTCACAGCA----CTAATCCT-----TGTTTGC-----CAGTGCACCTGATAATTGTCTAGGGAGTTGGATTAGTTGAAGCCAC---AGACC---------ATCTCCTCCAAGATCTCCTGGATGCAGCTCTGCAAATACAGTGCCCATATATGCAAGGCCAAGAGACATTAGGGTCCTCCCTGGACATCGCCACAAGGGGACACTCCCATTAGAAATCATGTTTTCTAGTTCAGACCAAGAGGGGCCGCTG--------------------------------------------------------AAGAGATATCTGGCAAG---------------------------------GAGGAAG-----------------------------------------------------TCAGATGAAAGAGATTC-----------TTGGGCTCATGACTAACAT-----------------------------------------------------ATTCGCAGTTGAG--------CTTGGTCCCCAGCACTCACCTTCTCATCTTGCCTGTTATGACCTTGGGTCTGAACACAAAAGATGTGTCAGGCTTCCAACACCTGGCAGCTGGTTTCTGCCC-AGAAGGGCATGTTCCTCTCCTGTCCCCTCTCCACCCACGGATacacacacacacacacacacacatacacacacacaATGAGGGGTAAGAGGTGTGGGCCTGCTGAGGTCTGGGCCTGATCAGGTGTGATCACAGTGTGGCCTGCTCTCCAGTGGGCTGTCCCACACAGCCTTGTGGTACCTGTTGGTGTCTCCCGCCACATGACCAGAAGTTTCAGAGTAGAGGGCCAAGCTGACATAGACAGCGACGTGAAAATCTCACACTCTAGACTCTCCTGAGCCCAGAGCACCAGAAAGTAGGAATA-TAGC-AACAGAACATCTTGTATTCTTGACCATTTCCAGTTAAGTGAGCTAAAAAGTGGGAAGG-TCTAGAATGTAGGTTCCTGGTTACCAGAGTTCTAAGTCAGTTGTGGGCTTGTCACCAAGGAAGTGAGGTCACTTTTTCAAGATTCCAGCACCTGGGCCCCTTCCTTCAGTCAGACCTATCTAGAGCCCCTTCTTGGCAGATGACTGCTTA-------CCCCAATGTCATCTCTTTAACTGTACACAATGAGCCAAAAATGCCATAGCCACAACTCTCTGAAA-ATGCAAGTAAAATCCTACctttga---------ggagacagagctgaatttagacccttatttctctgtttgttttcccagttctg-tgtcctgcctaacccactgtgtctctcacatagtccccagtttcctaacctgcacagtgggggccaggctagcatctgcttcctagggacatcatcaggtgtcta a score=5593.0 s hg17.chr7_random 217723 54 + 778964 TCCAGGAGAGAAGAGACAGCTGGA---------ACATAACTTTGTTTTTcttaccatctctgg s panTro1.chrUn_random 177288809 54 - 240967748 TCCAGGATATAAGAGACAGCTGGA---------ACATAACCTTGTTTTTcttaccatctctgg s canFam1.chr34 29648592 57 - 45232793 ------tgaggagacagagctgaatttagacccttatttctctgtttgttttcccagttctgt a score=91.0 s hg17.chr7_random 217879 1 + 778964 t s panTro1.chrUn_random 63381462 1 + 240967748 T a score=684.0 s hg17.chr7_random 217880 10 + 778964 aagataagac s panTro1.chr20_random 28115468 10 - 34336811 aagacaaaac a score=17429.0 s hg17.chr7_random 217893 310 + 778964 ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggat--catgaggtcaggagatcgagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaattagccgggttcggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaa----tggcgtgaacccgggaagcggagcttgccgtgagccgagattgcgccactgcagtccgcagtccggcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaa s panTro1.chr20_random 28115497 301 - 34336811 ggctgggtgcagtggctcaagcctgtaaccccagca-attgggaggccgaggcgggcaggttgcttgaggccaggagttcgataccagcctgtccaacatggtgaaaccccatctctactaagaatac-aaaagttaaccaggtatggtggtgtgcacctgtaatttcagctacccagaaggctgaggcaggagaatcactg----gagcccaggagacagaggttgcagtgagccgagatcgtgccatt-------gcactccagcctgggcaac--agcgagactccgtctcaagaaaaaaaagaaagaaagaa a score=3839.0 s hg17.chr7_random 218203 41 + 778964 aaGATAAGACATAAAAATAATGATGTAGTGTCACCTGTAGA s panTro1.chrUn_random 63381463 41 + 240967748 AAGATAAGACATAAAAATAATGATGTAGTGTCACCTGTAGA a score=23319.0 s hg17.chr7_random 218244 184 + 778964 TAATGCACACACTTAGAGATGGAAGCATTAGGAGAATAGGTGGGAGGTAGCATGGGCCACAACTCAAACA-GGCCTGGtgtct--gccagggtgatcttggaaatatcacttctccactgggcctcattttcAT-TCTGCTCCAGTATGAAGTTGAAATT-----AAATGTAGATACTGTCCTCTGGCATTCa s panTro1.chrUn_random 63381504 184 + 240967748 TAATGCACACACTTAGAGATGGAAGCATTAGGAGAATAGGTGGGAGGTAGCATGGGCCACAACTCAAACA-GTCCTGGTGTCT--GGCAGGGTGATCTTGGGAATATCACTTCTCCACTGGGCCTCATTTTCAT-TCTGCTCCAGTATGAAGTTGAAATT-----AAATGTAGATACTGTCCTCTGGCATTCa s canFam1.chr34 29648796 187 - 45232793 TGAGGTAGAAATTTAAGGATGGAAGATTGACAAGAAGGGGTGGGATGTGGCATGAAGGACCACTCAAAAGTGGCCTGGGGTCTCCAGCAATGTAATATCACAATAGTCACTT-TCCGTCTGGCCTCATGTTAACGGGGGCACCACAATGAGGTGAAAATGCTCCAAGATGCAGACATTGTCATCTTCT----- a score=29461.0 s hg17.chr7_random 218428 331 + 778964 tatagtttagctgtgcgtccccacccaaaactcattgtgtattataacccctaggtgttaagggaaaacctgaggggagatgattggattatggggacgggttctcctcatgctgttcttgt-gatagtgagttctcacgagatctgatagtttcataagcatctggtacatcccatgctctcactcacttcacttgtcagccactgtaattggaaggtttctgaggtgcccccacaattatgtggaaatgtgagtcaattaaacttctttactttataagttacccagtctcaggtactccatcattgcagtatgagaatgatctaataca s panTro1.chrUn_random 63381688 331 + 240967748 tatattttagctgtgcgtccccacccaaaactcattgtgtattataacccctaggtgttaagggaaaacctgaggggagatgattggattatggggacgggttctcctcatactgttcttgtagatagtgagttctcacgagatctgatagtttcataagcatctggtacatcccctgctctcactcacttcacttgtcagccactgtaattggaaggtttctgaggtgccccc-caattatgtggaactgtgagtcaattaaacttcttttctttataagttacccagtctcaggtactccatcattgcagtatgagaatgatctaataca a score=14002.0 s hg17.chr7_random 218759 97 + 778964 GGAATTCAACTTTCTAGTGCTTTCTCTTTATATTTAGAATCATTTCCATGTGCCTTATCAC-ATCTATGACAGAGGAAGTCTTCACAAAGTCTCCCAG s panTro1.chrUn_random 63382019 97 + 240967748 GGAATTCAACTTTCTAGTGCTTTCTCTTTATATTTAGAATCATATCCATGTGCCTTATCAC-GTCTATGACAGAGGAAGTCTTCACAAAGTCTCCCAG s canFam1.chr34 29648983 98 - 45232793 GTAATAAAACCGTCCAATTGTTTCCTGTTATATTTAGAATGAGATCTAGTTGCCTCGTTTTGGTCTCTGGGTGCTGCAagcttcacaatggctcccag a score=52852.0 s hg17.chr7_random 218856 597 + 778964 TACTAGGTATTGAGTGACTCAGTTTTttattgaataaaatggaatacttcctgatgccagtactatggcccttcggttttgaggaaaatatcatcttgtatgttggctaacaaggagataggagttcaaatcaaatttgttttgtcatactggctttaaggcagtgattagaaaaggcctaataggtgggttctgtaggggattgctggaaggaaagtaggaatatggaaagtcatgagacatatacagtcatctcttcttgtttcctcacaggtcacatacaaattcagggagagttagtatgaagcacacaatggaaatttgggctccaaagtctgcaaactgatgcttcatggacttcagttggccatattggttccaacaatttcagccaatgtttaaaaaacttatagcagttaaaattttagtgtttcaacaagccgtttcctatctttcattctgaagatccaTTTTTTAAGTC----TTTTTTTTAACAGTATAGGGGGTACAAATTCAGCTTCTCTCCAATGAAACACAGAAAAGGATATCCCTTTTGTATTAgttcaggctgctatgccaaagaaccatagataggcagca s panTro1.chrUn_random 63382116 601 + 240967748 TACTAGGTATTGAGTGACTCAGTTTTTTATTGAATAAAATGGAATATTTCCTgatgccagtactatggcccttcggttttgaggaaaatatcaacttgtaggttggctaacaaggagagaggagttcaaatcaaatttgttttgtcatactggctttaaggcactgattagaaaaggcctaataggtgggttctgtaggggattgctggaaggaaagtaggaatatggtaagtcatgagacatacacagtcatctcttcttgtttcctcacaggtcacatacaaattcagggagagttagtatgaagcacacaatggaaatttgggctccaacatctgcaaactgatgctttatggacttcagttggccatattggttccaacaatttcagccaatgtttaaaaaacttacagcagttaaaattttagtgtttcaacaagccatttcctatctttcattctgaagatcgattttttaagtcttttttttttttaaCAGTATAGGGGGTACAAATTCAGCTTCTGTCCAATGAAATACAGAAAAGGATATCACTTTTGTATTAgttcaggctgctataccaaagaaccatagataggcagca a score=21669.0 s hg17.chr7_random 219453 281 + 778964 tatagacaacaggacttaatttctcatacctccagaggttcaaatttgagatcagggtgtcagcatggttgagatctggtgatgactggcttctgaatttcagcctgcacacttcaggttttaccctcattttgcag---gaggatgagagccctctgcggtttcttgtataaagcc-agtaatctgtattatgagggtcccaccctaaggggttaattactttctacctccttatagcgttacgcccggggttacaattttaacacaAATATAGAAGAAAAATT s panTro1.chrUn_random 63400937 284 + 240967748 tatagacaacaggacttaatttctcatacttccagaggttcaaatttgagatcagggtgtcagcatggttgagctctggtgaggactcgcttctgaatttcagactgcacacttcaggttttatcctcattttgcagaaggaggatgagaaccctgtgcggtttcttgtataaagcccagtaatctctcttatgagggtcccactatcaggagttaattacatcctacctccttatagcgttacaccgggggttacaattttaacacaAATATAAGAGAAAA-TT a score=34359.0 s hg17.chr7_random 219734 400 + 778964 ATAGTAACTCTCAAGt-tttttttctttctttctttctttctttttttttttttttttttttttttgagacacagtttcactcttgtatcccaggctggagtgcagtggtgtgatctcggcttattggaacctttgcctcccaggttcaattgattctcctgcctcagtctcccaagtagctgggattacaggcatgcgccaccacatctggctcattttgtatttttagaagagacggtggtttcaccatgttgtccaggttggtttcaaacccttgacctcaggcgatccacacgtctcagcatcccaaagtgctgggattacaggtgtgagccaccgcacccTGTCAAGATGTTTTTAAAGCTCTAATTTTTCTCCTACTGGGTTTTTCTCGTTTGCG s panTro1.chrUn_random 63412413 387 + 240967748 ATAGTAACTTTCAAGTCTTTTTttctttctttctttctttctttttttttttt--------------agacacagtttcactcttgtatcccaggctggagtgcagtggtgtgatctcggcttattggaaccttcgcctcccaggttcaattgattctcctgcctcagtctcccaagtagctgggattacaggcatacgccaccacatctggctcattttgtatttttagaagagacggtggtttcaccatgttgtccaggttggtttcaaacccttgaccttaggcgatccacatgtctcagcatcccaaagtgctgggattacaggtgtgagccaccgcacccTGTCAAGATTTTTTTAAAGCTCTAATTTTTCTCCTACTTGGTTTTTCTCGTTTGCG a score=19990.0 s hg17.chr7_random 220134 202 + 778964 CCCTCGATCTTTCT----GTCTCTTTTTGTGTAAACCTTTTTGTCTAATTCTGTCTATTGTATTCCTCAAACACAGGAAGCAAGCTCCAATGCTATGAGATGCTCCATGTAGAGACCCACATAACAAAGGG-TGAGGGGGTGCTCAGACGAGTAGAGAGAAGGAAAGTCAGGCTCTCCAGCCACACTAAACCCTGTCAATTTTCACA s panTro1.chrUn_random 63412800 206 + 240967748 CCCTCGATCTTTCTCTCTGTCTCTTTTTGTGTAAACCTTTTTGTGTAATTCTGTCTATTGTATTCCTCAAACACAGGACGCAAGCTCCAATGCTATGAGATGCTCCATGTAGACACCCACATAACAAAGGG-TGAGGGGGCGCTCAGACGAGTAGAGAGAAAGAAAGTCAGGCTCTCTGTCCACACTAAACCCTGTCAATTTTCACA s canFam1.chr6 3071421 184 + 79106041 ctctcatgtttccc----ttctcttttcct----ccctttcccttttactttctcta------tccctgaac-ctaaattcaagtacagatgttttcagctg--ccatatagag-ctcacatggcagagaaccaaggcagtgccaaggccaaaagacacacagaaactcaggctctgagtccaaatggcatctgg--aatcatg--- a score=137071.0 s hg17.chr7_random 220336 1127 + 778964 TGAGTCAGCTTAAAGGCTCATGCTTTCccagtccagcttcagttaagaccacagcccccagtctcataaaagacctgaaggcagaggtagccagctgaactgtgtccagatt-ctggtccacacaaattatgagatattatatgt---tgttgaaaagtgctgacttttagggcaatgttgt-cagaaaggagc---agatatctaaCCTCATCTCCCAGGCCCTAGGAT-----TCTCCATCCCTCTGCTT--ATCTCTTTCTCAGGCTGTC--TGCAGCCAAACTAGT--CCCTTTTTACCTCT----GCCAAACTCACACCTATGAGTTTTTTCACTAAGGGTGGCTTCTCCCTGACAC-----------ATGCTTGTGCAGATGCCTCCCTGCTGTCATCCTCATCATGGATTAAAAGTCA-CCTCAGTGACGCC--TGAGTTCCTCCCATGCAATAATTTTCCAGGTTTTCTTCTCA----ATAATCTACTTTATATTATAGTCCTTGCTCTTTTCTTTCACATATACTTGCTTTAGTGCTTTT-GTCCAGCGGTCCTCAGACTGTTTGGTCC-TGGGTTGGGGGGTGCAGACATGATGTAATA--ATTTTCTGTACCACATGTTGGACCC-ACCAGGGTCACTGGCAAATGGTGAGCGCAAGGGAAAAAAGACTGGCTA---AGTGATTATATGGAGGATCTCTAATATCC-CTTCCCCTTTTGACCACCTGA---TAATGTGGACAT--CACT-----------------------------GATAACAAC-ATGAGTTGTG--TGACTGTTACTTGTTCCAGCTGCTCCAGCAAAGCTCAGTGGGCACCAGAAACACAGTAGGCTGTAACCACC-TCCTGGCCATCACTAACCCTACAGCCCCAAGCAGGAGCACTACCGAACAAATCTGATACCTTGATTTTTCTGTCCTCAAGACACTGGTTCTTCAAGGTCCTAGGGGATAAAGTAGCAGGATCTGAAGGCCCCAA-GTATAATGAGTGACCTAGGAATCCCGTTTTGCCCTCTCTTTGCCT-CCACCTTTTTGGTTGTGCTATTTACTCATGAGGTATCCTCCCCTTATCC-----AGTGAAATTATTTTCTACCACTTTCA----AATGAGGACCTTAAGAACGCAACAGTAGCTGAGATTTTCCGTGGACCTCAGCCTCAGAGTCCAGTGCTCTGGCACATT s panTro1.chrUn_random 63413006 1133 + 240967748 TGAGTCAGCTTAAAGGCTCATGCTTTTccagtccagcttcagttaagaccacagcccccagtctcataaaagacctgaaggcagaggtagccagctgaactgtgtccagatt-ctggtccacacaaattatgagatattatatgt---tgttgaaaagtgctgagttttagggcaatattgttCAGAAAGGAGC---AGATATCTAACCTCATCTCCCAGGCCCTAGGAT-----TCTCCACCCCTCTGCTT--ATCTCTTCCTCAGGCTGTC--TGCAGCCAAACTAGT--CCCTTTTTACCTCT----GCCAAACTCACACCTATGAGTCTTTTCACTAAGGGTGGCTTCTCCCTGACAC-----------ATGCTTGTGCAGATGCCTCCCTGCTGTCATCCTCATCATGGATTAAAAGTCA-CCTCAGTGAGGCC--TGAGGTCCTCCCATGCAATAATTTTCCAGGTTTTCTTCTCA----ATAATCTACTTTATATTATAGTCCTTGCTCTTTTCTTTCACATATACTTGCTTTAGTGCTTTTTGTCCAACGGTCCTCAGACTGTTTGGTCCCTGGGTTGGGGGGTGCAGGCATGATGTAATA--ATTTTCTGTACCACATGTTGGACCCCACCAGGGTAGCTGGCAAATGGTGAGTGCAAGGGAAAAAAGACTGGCTA---AGTGATTATATGGGGGATCTCTAATATCC-CTTCCTCTTTTGACCACATGA---TAATGTGGAGAT--CACT-----------------------------GATAACAAC-ATGAGGTGTG--TGACTCTTACTTGTTCCAGCTGCTCCAGCAAAGCTCAGTGGGCAGCAGAAACACAGCAGGCTGTAACCACC-TCCTGGCCATCACTAACCCTACAGCCCCAAGCAGGAGCACTATGGAACAAATCTGATACCTTGATTTTTCTGTCCTCAAGGCACTGGTTCTTCAAGGTCCTAGGGGATAAAGTAGCAGGATCTGAAGGCCCCAA-GTATAATGAGTGACCTAGGAATCCCGTTTTGCCCTCTCTTTGCCTTCCAACTTTTGGGTTGTGCTATTTATCCATGAGATATCCTCCCCTTATCC-----AGTGAAATTATTTTCTACCACTTTCAT---AATGAGGACCTTAAGAACCCAACAGTAGCTGAGATTTTCCGTGGACGTCAGCCTCAGAGTCAAATGCTCTGGCACATT s canFam1.chr34 29649354 1181 - 45232793 tgagtcactttgggagaaaatcctctgctaggctagcctcccatgaggtcacag-ctgcaacctc-tgatgtaccttgaggttgaggaaccaagctaatttgtgtctggattcctcatccacaaaaccgatgagaaattaaatatatgaattgtaagatgcaaggtgtcggggcaacacagt-aacagaggaacaatagatagctaac--aGTCTACCAGGCCTCAGCAtcgctgccctcttccctctcctcagatctcctcctc---ctttcctcacagccgcgctggctgcccatttcacctcctctggccaacccagcttctgttagtatctgcatcaggggtcccttcttcctgacacactgtccccagacgcgtgtagatctaactcccttttgttattctgttctcag---caatgtcaccctcagtgagaccttttatacctttctctccaatgatttcccaaccttccttcccggcatacagtcttgtgtagaatatagcacttgctcttttctttcacgtgtctttgtttttgtgctttt-gtcca----cctccagactgtgagttcc-------------tacaggcaggaactcatggtattttcagctccatcca-tgggccc-accaaggtacctggcatagggtgagtacttagt------gcctagttatggaatgaatcaatGAGAAGTTCTTGGAACCCACTTCCCCTTTCAGCCATCTAGACTGAAGGGAGAAATGCCACTAAGAGTTTCAAGTTGTCTCTGGGCAGGGGGATGACCACAATGACCTCTGCATGAGTCTTTCCT-CTGCAGTTCCTCCCGCAGAAGTCCCTAGTTACCAT-TGCAAAGGAGGTTTCCTGCATCGTGTTCTCCAGCTCTAGCAATACAGCCCCAGGCAGGCACACCACCAAAGAAA--GGACAGCTTTATTTGGGTGTCCTCAAGGCAGTGGCTTTCCAGAATCACAGGGG-CAAAGGAACAGGACCTATGGGCTCCAAGGCAGAGTAAAGGACCTCAGAATCCTCCCTTTCATTCCTTTCCTGTTCTCTCCATTGGTGTCTAC--TTTACAAATACGG-AACCTCACCTCAGCCAGAAGAGTGACCCTGCTCTCACCCATGCCTATCTAAATGAGGATCCTGAAGGCCTTGTGGAGACTGGTCTTGTCCCTGGACCCCAGATGCAGTGTACAGTGCTCTggcatttt a score=65481.0 s hg17.chr7_random 221463 655 + 778964 TAACTCTGTCTCATCTTCATCTACCCAAGATGCCTCTCAAGTGGCCATGC-------CTCCCTCTGATTTGAAGGATCTGCAGAG--TGG-GTGCATTTTTGCA--GTCTCAGAG--CAA---------------GAATCCAGGCTGGCAGACACTTATGAGTATGTGAAATCATCAAGGTCACCCACTTCAGGCACCCCTATTTATGAGGAAGAAAACAGG---CTTTCCTGTAGGCACTGTCTACATTAGGCTGAGGTGGAGCATA---GCTCATTTTACTTCCAGTTGCCCTCAGAGCTGGATGCA----GAACCCCAGTCCTGTTATCTTGAAACT-----------------------------GACATGGAGAGGACC-----------------------------CCATGTGAACAGAACCCT-----------------------------------------------GAATCTGCTC-----------------------------------------ATTTTC---------------TGTGCTCCTGAA------------------------------------TGTGTAG--------------CTACAGACTCTAATTTCGAAAACAAACCTGATAAGTGggacggtgccaaggcctaggaagctggagccctctctaatgctctggagcctgcccacctcctgagatctggaccagtctctgcctcttctggggcctcagtttcccaattgtaatgtaatgagaaattaaatgtaaaactgcataaacatatgctctgtgAGAATTTGGTGTCAGAGTTC-TCAATACTGGATGATAATTTGGAGTGGGGTGGGTTTGGGACCCATGGGTTCTCAGGCCTCCTTTCACA s panTro1.chrUn_random 63414139 657 + 240967748 TAACTCTGTCTCATCTTCATCTACCCAAGATGCCTCTCAAGTGGCCATGC-------CTCCCTCTGATTTGAAAGATCTGCAGAGAGTGG-GTGCATTTTTGCA--GTCTCAGAG--CAA---------------GAATCCAGGCTGGCAGACACTTATGAGTATGTGAAATCATCAACGTCACCCACTTCAGGCACCCTTATTTATGAGGAAGGAAACAGG---CTTTCCTGTAGGGATTGTCTACATTACGCTGAGGTGGAGCATA---GCTCATTTTACTTCCAGGTGCCCTCAGAGCTGGATGCA----GAACCCCAGTCCTGTTATCTTGAAACT-----------------------------GACATGGAGAGGTTC-----------------------------CCATGTGAACAGAACCCT-----------------------------------------------GAATCTGCTC-----------------------------------------ATTTTC---------------TGTGCTCCTGAA------------------------------------TGTATAG--------------CTACAGACTCTAATTTCGAAAACAAACCTGATGGGTGGGACGGAGCCAAGGCCTAGGAAGCTGGAGCCCTCTCTAATGCTCTGGAGCCTGCCCACCTCCTGAGATCTGGACCAGTCTCTGCCTCTTCTGGGGCCTCAGTTTCCCAATTGTAATGTAATGAGAAATTAAATGTAAAACTGCATAAACATATGCTCTGTGAGAATTTGGTGTCAGAGTTC-TCAATACTGGATGATATTTTGGAGTGGGGTGGGTTTGGGAACCATGGTTTCTCAGGCCTCCTGTCATA s canFam1.chr10 37329682 872 + 72717409 TGGCTCTGCCTCCTC----TCCACCCAAA----CTCCTCATTTGCCAAGCTCCAATGTTCCCTTTTCTCTGAAAAACTCATGGAG--TGGAAAGCATTTGTCCATGTTCTCAGAGAACAATGAGCTTTTGGTTCTGAACTAAGGTCTAAAAAC-TTTCCAAACAGACATAATCCTTGTGGTCAGACACATCAAGTACACAT-TTTGTAGTGTAGGAAACTGAGTCCTTTCCTATAGCCCCTGTCTACAC----------TGAAGGATATGTGCCCAGTTT-----CAGGAGCC--GAGAGCTGTCGACATTAGGAGCCCTGGCCTTATCCTCTGGAGACTACTGGGATATGGCCAGGCAGGGCTATGGGGACTTTGAGAGTCCCTCTCATGCTGTGGACCTCTAGATGTATCACCAGGAGAATAGATGCCCCTTGTCTGTGCCTCCAACTTCTTTCTTCTTTTTTTGTCCCTTGCAGGGATTCTGCTCTCCTTAACCATCCCTCAATGTCTCCAACTGTGAAAAAGTCTGTTTCCATTTGTGTATGCCCATGTACTTCTGGGGATGAGGTGAGTAAAATGGCCCATATTGGAAGGGGTTGTGCAAGGATAACAAGGATCTTAGGGACTCTAGTTTCCAAAGTAAATGTGCTGAGAGGGTTGAACTCTGTTCTAAGGAAGCCAAAGTAGTCACATTTCTTCTGGGATCTTCCTATGTACTGAGACCTGGACCA-TCCCTGCTTCTTTTAGGGCCTCTGACTCCCAGATGTA---TAAAGAGCGTTGGGATGTGGAACTGTGAAAGTATGTGCACAG-GAGGATATGATCTCTGGCTCCATCCTCACTGGATGGGGTGTTCGTTTGGGTGGCCTCTGGCAGGCACAGGTATACAAGTCTCCTCTAACA a score=335969.0 s hg17.chr7_random 222118 3746 + 778964 CCCAGTGCAGTAGGTGTAGAGCTCTGGACAGCCAGGTGTTCTTTCCTGAGCCAGCTGATTACAACACAATGGACCAAGGGCTCTGATCTTAAATATGGTTTCACAGGATACCCCACCTTCAGCCACCACCT-GCTCTGTGCTTCCCATATTTTGGGGAGCTGATGACAAACCCCATTATAGTGAAGAAGAGCAAGAAACTAGACTTGTGGGCCTGGGGAAAAGAAAAAAAACACTTCTATTTCTCCCAAACTGTAGAATCTCTTGTCAAATATTTAATTTTGATTATATCTGAGCTTGATAATACATTCATGTGTTAACAGCTGCTTAAATTTATTTTTTCTGTGAAGTGTGGGATAATGTCTTTGC-CGTATTTTAAATCAAATTCTAAAAGCTCTCTTTAGAGTGGATAAGTGAGCATCTTTGTAATATAAACTTCACATATTTGTTGCCAGTTTGTTCTTTTTGTTTTTGTTAAAATGTTTTGTTTTATTCTGATTTGGATGTCTTTTGGGGTTTTGCTTTGTGGCTATTTATTATGACAGTGTAACTTCTCCTCTAATTGACTGACAGGTTTGTACATTCTCAATAAAATATTTTCATAAAATCTTTGTAAAAATTGTGTAGTCAATTTTACATTACATAAACATAAAACAGTAAAGACTATCATGATGAAAAAGAAAGATTGAGGGCTTAAAAAGTAAAATACgacacaactaaagtagtctg-aaagggaaatttacagcactaaatccccacaagagaaagcagaaaaatgtctaaaatcgacaccgtaacatcacaattaaaaaaactagggaagcaagagcaaacaaattcaaaaactagcagaagacaagatttaagatcagagcagaactgaaggagatagagacacaaaaagcccgtccaaaatatcaatgaatccaggagctggtttttttaaaagatcaagaaaataaataaacttctagccagactaataaggaagaagagaagaatcaaatacatgcaataggaaatgataaaggggatataaccattgatcccacagaaataaaaagtatcattacagaatattataaatacctctttgcaaattaactagaaaatctagatgaaatggataaattcctggacacatataccctcccaagtgcaaaccagtaggaagtcgaatccttgaataggccaataacaagttctaaaattgaggcagtaattagtagcctaccaacaaaaagaa-gtccaggaccagacggattcacagccgaattctaccaaaggtacaaagaggagctggtaccattccttctgaaattatttcaaacaatagaaaaagaggtactcctccctaattcattttatgtggccagcatcatcctgaaaccaaaacctggcaaagacacaccagaaaaagaaaatttcaggcccatatccctgatgaatatcgatgcgaaaatcctcaataaaatactggcaaaccgaatccagcagcacatcaaaaagcttatccaccacgatctagtcagcttaatccctgggatacaaagctggttcaacatatgcaaatcaataaataaaatctatcacataaacagaactaatgacaaaaaccacatgattatctcaatagatgcaaaaaaggccttcaataaaattccacacctcttcatggtaaaaactctcaatgaattatgtattgatggaacctatctcaacataataagagttatttatgacaaatgcacagctaatatcatactgaatgggcaaaaactggaagcattccctttgaaaacctgcacaagacaagaacaccctttctccccactcctattcattatagtattggaagttctggcaatcagccaaagaaagaaagaaataaagcgtattcagataggaagagaagaagtcaaattgtctttgtttgcagatgacatgattgtatatctagaaaaccctaccatctcagcccaaaatttccttaaactgataagcaacttcagcaaagtctcaggatacaaaatcaatgttcaaaaatcacaagcattcctatacgcaataataggcaaacagagagccaaatcatgtgttaactctcattcacaattgctacaaagggaataaaatacctaggaatccaacttaaaaatgatgtaaaggaccacttcaaggagaactacaaaccactgctcaaggaaatgaaagaggacacaaacaaacg-aaaacaatccatgctcatggataggaagaatcaatattatgaaaatggccatattgcccaaagtaatttataaattcattgctatccccatcaagctcccattgactttcttcacagaattagaaaaaaaactacttcaaatttcatatggaatcaaaaaaggtcttgcatagacaagacaatactaagcaaaaagaacaaaggtggaggcatcatgctagctgtcttcaaactatactaaaaggccacagtaaccaagacaggatggtactcgtaccaaaacagatatattgacaaatggaacagaacagaggcctcagaaataacactcaacatctagaatcatctgatctttgatgaacctgacaaaaacaagtaatggggaaaggattccctatttaataaatggtgttggaaaactagctagccatatgcaaaaaactgaaactggacttcttcctttctcgttatacaaaacataactgaagatggattaaagacttaaacataagactt-aaaaccataaaaaccccagaagaaaaccaaggcagtaccattcaggacataggcatgggcaaagacttcatgactacaacaccaaaaacaatggcaacaaaagccaaaattgacaaacgagatataattaaactaaagagcttctgcacaacaaaaaaaactatatcagagtgaacaggcaacctaaagaatgggagaaaatttctgcaatctatccatctgacaatgggctgatatgtagaatctacaaagaacttaaacaaatttacaagaaaaaaagaaacaacaacatcgaaaatgggcaaaggatttgaacagacacttctcaaaaggagacatttatgcagccaataaacaaatgaagaaaaggacatcatcactggttattagacacatgcaaatcaaaaacacaatgagaaaccatcccacacctgttagaatggtgatcattaaaaaaatcaggaaa-caacaaa-ggatgtggaaaaataggaagacttatacactgttggtgagagtgtaaattagttcaaccagtgtggaagacagtgtggtgattcctcaaggatccacaatgagaaataccatttgacccagcaatcacattactgggtatatacccaaaggattataaattattctattataaagatacatgcatacgtatgtttattatggcactgttcacaagagcaaaaactttgaaacaaaccaaatgaccatcaatgatagactgaataaagaaaacttggcatgtccacatcatggaatacgatgcagtcataaaaaggatgagttcatgtcctttgcagggacatggatgaa-gctggaaa-ccaccattctcagcaaactaacacaagagtagaaaagctaacatcgcatgttctcactcataatagggagttaaacaaagagaacacacggacacaggaaggggaacatcacacactggagcctgtcgggaagtgggggactatgggagggatagcattagaagaaataTTCC s panTro1.chrUn_random 63414796 3753 + 240967748 CCCAGTGCAGTAGGTGTAGAGCTCTGGACAGCCAGGTGTTCTTTCCTGAGCCAGCTGATTACAACACAATGGACCAAGGGCTCTGATCTTAAATATGGTTTCACAGGATACCCCACCTTCAGCCAGCACCTCGCTCTGTGCTTCCCATATTTTGGGGAGCTGATGACAAACCCCATTATAGTGAGGAAGACCAAGAAACTAGACTTGTAGGCCTGGGGAAAAGAAAAAA--CACTTCTATTTCTCCCAAACTGTAGAATCTCTTGTCAAATATTTAATTTTGATTATATCTGAGCTTGATAATACATTCATGTGTTAACAGCTGCTTAAATTTATTTTTTCTGTGAAGTGTGGGATAATGTCTTTGCTCATATTTTAAATCAAATTCTAAAAGCTCTCTTTAGAGTGGATAAGTGAGCATCTTTGTAATATGAACTTCACATATTTGTTGCCAGTTTGTTCTTTATGTTTTTGTTAAAATGTTTTGTTTTATTCTGATTTGGATGTCTTTTGCTGTTTTGCTTTGTGACTATTTATTACTACAGTGTAACTTCTCCTCTAATTGACTGACAGGTTTGTACATTCTCAATAAAATATTTTCATAAAATCTTTGTAAAAATTGTGTAGTCAATTTTACATTACATAAACATAAAACAGTCAAGACTATCATGATGAAAAAGAAAGATTGAGGGCTTAAAAAGTAAAATACAacacagctaaagtagtctgtaaagggaaatttacagcactaaatccccacaagagaaagcagaaaaatgtctaaaattgacaccgtaacatcacaattaaaaaaactagggaagcaagagcaaacaaattcaaaaactagcagaagacaagatttaagatcatagcagaactgaaggagatagagacacaaaaagcccatccaaaaaatcaatgaatccaggagctggttttttgaaaagatcaagaaaataaataaacttctagccagacaaataaggaagaagagaagaatcaaatacatgcaataggaaatgataaaggggatataaccattgatcccacagaaataaaaagtatcattagagaatattataaatacctctttgcaaattaactagaaaatctagacgaaatggataaattcctggtcacatatactctcccaagtgcaaaccagtaagaagtcgaatccctgaataggccaataacaagttctaaaattgaggcagtaattagtagcctaccaacaaaaagaacgtccaggaccagacggattcacagccgaattctaccaaaggtacaaagaggagctggtaccattccttctgaaactatttcaaacaatagaaaaagaggtactcctccctaattcattttatgtggccagcatcatcctgaaactaaaacctggcaaaggcacaacaaaaaaagaaaatttcaggcccgtatccctgatgaacatcgatgtgaaaatcctcaataaaatactggcaaactgaatccagcagcacatcaaagagcttatccaccatgatctagtcagcttaatccctgggatacaaagctggttcaacatatgcaaatcaataaataaaatccatcacataaacagaactaatgacaaaaaccacatgattatctcaatagatgcaaaaaaggccttcaataaaattccacacctcttcatggtaaaaactctccatgaattatgtattgatggaacctatctcaacataataagagttatttacgacaaatgcacagataatatcatactgaatgggcaaaaactggaagcattccctttgaaaacctgcacaagacaagaacaccctttctccccactcctattcattatagtattggaagttctggcaatcagccaaagaaagaaagaaataaagcatattcagataggaagagaggaagtcaaattgtctctgtttgcagatgacatgattgtatatctagaaaaccctaccatctcagcccaaaatttccttaaattgataagaaacttcagcaaagtctcaggatacaaaatcaatgttcaaaaatcacaagcattcctatacgcaataataggcaaacagagagccaaatcatgtgttaactctcattcacaattactacaaagggaataaaatacctaggaatccaacttaaaaatgatgtaaaggacctcttcaaggagaactacaaaccactgctcaaggaaatgaaagaggacacaaacaaacggaaaacaatccatgctcatggataggaagaatcaatattgtgaaaatggccatactgcccaaagtaatttataaattcattgctatccccatcaagctcccgttgactttcttcacagaattagaaaaaaaactacttcaaatttcatatggaatcaaaaaagatcttgcatagacaagacaatactatgcaaaaagaacaaaggtggaggcatcatgctagctgtcttcaaactatacaaaaaggccacagtaaccaagacaggatggtactcgtaccaaaacagatatattgacaaatggaacagaacagaggcctcagaaataacactcaatatctagaatcatctgatatttgatgaacctgacaaaaacaagtaatggggaaaggattccctatttaataaatggtgttggaaaactagctagccatatgcaaaaaactgaaactggacttcttccttactcgttacacaaaacataactgaagatggattaaagacttaaacataagactttaaaaccataaaaaccccagaagaaaaccaaggcagtaccattcaggacataggcatgggcaaagacttcatgactaaaacaccaaaaacaatggcaacaaaagccaaaactgacaaacgagatataattaaactaaagagcttctgcacaacaaaagaaactatatcagagtgaacaggcaacctaaagaatgggagaaaatttctgcaatctatccatctgacaatgggctgatatgtagaatctacaaagaacttaaacaaatttacaagaaaaaaagaaacaacaacatcgaaaatgggcaaaggatttgaacagacacttctcaaaaggagacatttatgcagccaataaacatatgaaaaaaaggacatcatcactggttattagacacatgcaaatcaaaaacacaatgagaaaccatcccacaccagttagaatggtgatcattaaaaaaatcaggaaaacaacaaaaggatgtggaaaaataggaagacttatacactgttggtgagagtgtaaattagttcaaccagtgtggaagatagtgtggtgattcctcaaggatccacaatgagaaataccatttgacccagcaatcccattactgggtatatacccaaaggattataaattattctattataaggatacatgcatacatatgtttattatggcactgttcacaagagcaaaaactttgaaacaaaccaaatgaccatcaat-atagactgaataaagaaaacttggcatgtacacatcatggaatacgatgcagtcataaaaaggatgagttcatgtcctttgcagggacatggatgaaagctggaaaaccaccattctcagcaaactaacacaagagtagaaaagctaacatcgcatgttctcactcataatagggagttaaacaaagagaacacagggacacaggaaggggaacaccacacactggagcctgtcgggaagtgggggactatgggagggatagcattagaagaaataTTCC a score=15088.0 s hg17.chr7_random 225864 123 + 778964 TGGCCTAGGCCACTATTGCGATTTTCTAAATTTT--GTTTCAAAAACATGATATGTTTCAAAAATTGTTATTGGTATGTAATTATATAAATATATAGTTCAGAAAAAAGAATCAACATTAATTAT s panTro1.chrUn_random 63418549 123 + 240967748 TGGCCTAGGCCATTATTTAGATTTTCCAAATTTT--GTTTCAAAAACATGATATGTTTCAAAAATTGTTATTGGTATGTAATTATAAAAATATATAGTTCAGAAAAAAGAATCAACATTAATTAT s canFam1.chr1 18342666 123 - 124897793 TGGACTAGGCAACTTTCCAGATTTTCTAACTTTTCATTTCTGCAAATATG-TATGTTTAATCATTTGATTTGAGGCTGTGCTTATAGAAACACACTGCTTTG-CAGAAGAGGCAGACTTAAGAAG a score=27473.0 s hg17.chr7_random 225987 190 + 778964 GCTTTTTCCAAAATACTTTATGGTTTTGAGCTCTTCTAGCAGTGACATTTTTGCTGTAGGTAATTGCTGTGTATCTGGTATATTCATCATAGCATACTTTGTGCCGTTTACACTTATCCT-TCAATTTCCCACTC--TCCT-AAGTGTAAAAGTTCAAGGCCAGAGCTCCCATATCTTCCC--------AATATTACTTTTT s panTro1.chrUn_random 63418672 191 + 240967748 CCTTTTTCCAAAATACTTTATGGTTTTGAGCTCTTCTAGCAGTGACATTTTTGCTGTAGGTAATTGCTGTATATCTGGTATATTCATCATAGCATCCTTTGTGCCGTTTACACTTATCCT-TCAATTTCCCACTC--TCCTTAAGTGTAAAAGTTCAAGGCCAGAGCTCCCATATCTTCCC--------AATATTACTTTTT s canFam1.chr1 18505141 197 - 124897793 GCTTTCCTCGAGATATTTTATATCCTCAATCTCTTCTGGCATTAAA--TTTCACTATGGGTAATTGTCCCAGTTTGGTTATATCCATCATAACATCCTTCCTGCCCTTCACTCTCCCTCTATCAAATTCCCAGTCATTCATTAAGAATAAATACTCAGGGCCACTGCTTCCATATCACTCTAAGGAAAGAATATTCCTT--- a score=86347.0 s hg17.chr7_random 226177 886 + 778964 GAAAAGAAGCTTCTATGTACTGTTTTCTCTGGGTCTTGATTGGATATATTGCTAAAAG----AGCTGaaaaataataatttttttaaaaattCGGTGATGAGATTAAAGTAAATATATTTTATAAATCTAATGTACAAAATGAG---------------GTCAGCTGAGAAGACAATGACAGTTGAAGCAGAACCTGAGATCCTGTTTCTCTCCATTGACAT----ATGAACTTAACTACAATT----GGGTGAACAAAGCCAGTT--GAGTTTGTAGCACCCCACATGAGAAAAAAGCCAACCATAACCACATTTTGAAGAAA-----ATTTGGTCACATTTGTGCACTACAG----------------------AACAGCGCAGTTA-GATAAAAATCTGTCCATTCCATGATTCTCCTTTGGGAAAGAAAAAAGAGTGAAATGCGTATGCAAACTTCTGACTTACTGAGTTATACCGGGGTTATCTAAAGACTGGAAATTGCTTCCT-------TTAACATTTAGTGTTGATGAGAATAGAGACTGAGTTTAAATGACAGCTTGG-GTCAACTGAGAATAAAGATAAATGCTTCTTACAACAACAGAG--ACTGTAGTGCCTACAACA---GTGACGAAGGGAAGAGACTAAAGGCTCCTAAGAGGAAACAGAGGTAAACCTTATTAACAAGAAAATACATACAGTAGTCCAAAGAAGACACATTTTGACaacagattggagaagctcccagtatgactactgtggctgaatgttgtcaattttcccatg-tataaagctctttcataaaggataaaa-taggtagtggtt--tcttaattgat--caaaacc-ttaacaaaactacagtaagtaaaagcaaccaggaaatataacttaatcaaaggagaaaaatatatattc---aagtgaacctaaagaagtggagatctaggaattATTT s panTro1.chrUn_random 63418863 887 + 240967748 GAAAAGAAGCTTCTATGTACTGTTTTCTCTGGGTCTTGATTGGATATATTGCTAAAAG----AGCTGaaaaataataatttttaaaaaaattCGGTGATGAGATTAAAGTAAATATATTTTATAAATCTAATGTACAAAATGAG---------------GTCAGCTGAGAAGACAATGACAGTTGAAGCGGAACCTGAGATCCTGTTTCTCTCAATTGACAT----ATGAACTTAACTACAATT----GGGCGAGCAAAGCCAGTT--GAGTTTGTAGCACCCCACATGAGAAAAAAGCCAACCATAACCA-ATTTAGAAGAAA-----ATTTGGTCACATTTGTGCACTACAG----------------------AACAGCGCAGTTA-GATAAAAATCTGTCCATTCCATGATTCTCCTTCGGGAAAGAAAAAAGAGTGAAATGCGTACGCAAACTTCTGACTTACTGAGTCCTACCGGGGTTATCCAAAGACTGGAAATTGCTTCCT-------TTAACATTTAGTGTTGACGAGAATAGAGACAGAGTTTAAATGACAGCTTGG-GTCAACCGAGAATAAAGATAAATGCTTCTTACAACAACAGAG--ACTGTAGTGCCTACAACA---GTGACGAAGGGAAGAGACTAAAGGCTCCTAAGAGGAAACAGAGGTAAACCTTATTAACAAGAAAATACATACAGTAGTCCAAAGAAGACACATTTTGACaacagattggagaagctcccagtatgactactgtggctgaatgttgtcaattttcccatgttataaagctctttcataaaagataaaa-taggtagtggtt--tcttaattgat--caaaaccgttaacaaaactacagtatgtaaaagcaaccaggaaatataacctaatcaaaggagaaaaatatatattc---aagtgaaactaaagaagtggagatctaggaattattt s canFam1.chr1 18505505 906 - 124897793 cAAAGGAAATATTCTTTACCTGTCTTTGCCAGTAAGTG--TAGGTAGGGTGTCAGAAGACATAACTGAAAGATACCAAATGATTATTGCACTTGCTG----TATTTACATGCATATACATTAAAATGCTAATGTACAAAACTAATGTCCATCATAGCACATCAGTAGAAGGGA----GAAAGAGGAAGC--AACCAGA----CTTTACTTTTCCATGGAGACAGAAATGGACCAAACTACATTTTCCAGTGCTCCAGAAGCCAGTTAGAAGAACACAGCACCTCCAGGCAAGTACAGATGAAGAAGAGCCACATTGAAGAGACAAGATGAGTTTATAACACTTGCCCACAATAGTTACTCACCCTACCTAGAGTTTCACAACAAGATTGTGAGAAAACTCTCACC----------TCTCCTC------------AAGAGACAAAGACATATGTGACCTCTGTGTTTAATGAT-----CTGGTTTTGTGCAGCTCCCTGACA-GACTTCTTATCATGCTTGACATGGAGGGCTGAGGGAAATGGAAGCACCCTCTGAATG-CACCGTGGTGGCCACTCAGAGAAAATATGAGTACTTATTCAAGCACCAGGGAAACTGCAAAGCTAAAAGCGAACATCAGGGAGAGGAGAAATCTCAGGCTCCAAGAAGAAAAAAAACGC---TCTTATAAGTGGAAAATTATAAA----AACTCAGACATTACACATCCCCAGAACATgtctgacaagc-cccagaattagtagcacagc----tgttatttgtgttctcttg-tacaaaacaagtacctaaagcctgggacccagaagctgtttctcttgtttgattcccaaatt-tcaataaaagatcacaaagcatacggaaaaacagaacacattcctatcaaagaaacaaaat-taagtccccaaactggccctaaataaatagagaaccattaattacct a score=238271.0 s hg17.chr7_random 227063 2750 + 778964 TTTTAACTTAAAATCTTTTTAtttttctttactttttcattttatgcagaggatcttactttatctcctgggacagagtacactggtggaatcacagctcactgtaacctcaaatttcggaagtcaagcagtcatgccacctatgtctcctgagtaaatatgaccacagttgtgcacattacccctcctgtatagtttctttaaaaaaatttgtacaaacagtatgttgctgtgttgcctcggctggtctcaaactcctggtctcaggcaatccgactgcttcagtctgaaagt-gct-ggcacaagctaccatacctggAATTGTTTCTCTTTTAagaaaaaatagctttaaatcattaatagt-aaaataaaacaaagaaaggtattgcgtaacgataaagggttcaattcaacaagaagacttaactatcgtaaatgtagatgcacccaactttggggaacatagagttatacaacaattactgctagaccgacaataagactcaagtagacacaca-ataatagtaggggaatgtaactccccactaagtgtttgacag-attatcta-ggcagaaacttaacaaagaaattctggagtttaattcgacacttga-tcaaatgaaactaata-gacatttatagtatatgc-aacacatcatctaaagaaagtaaattcttctcatctgctcacagaatatgacaggccacaatggaacaaagataaaaa-tcaataccaagaaaatctcacaaaatca-cagaatgatatt-gaaattaaacaacttgctcctgaatgaattttggat-aaacaaaaaaattaaggcagaaaatt-aaaaagattttgaaatagaagagacacaatataacaaaatgtctgggttgtaggaagagctctgttaagaggaaagttgagagtgctaaatacctgcatcaagaagttagaatgatctcaaactaacaatttaacatcacacttagagaaactagaaaaataaaaactaacttaccccaaagctagcagaatggcaaaaatattcataacctatgaacctgacaaaatctaatactcagaatctataagaaacttaaagaattcacaaggaaaaaattaccccatgaaaaagtgggcaataacagacact-cttcaaaagaacacatacaagtggccaaataacatgaaaaaagcttatcatcactaa--ccatcaaggaaatgtaaataaaaacc--acaataagacaccattgtacaccagttagaatggtttttgttaaaaagtaaaatgataatagatg-ttgatggggttttagagggaaaaaaccacttatacactgttaataggaatgtaaattagttcagccactgtggagagcagcttggagattttcc-aaataactgagagttaaactgtgattcaacccagcaatttcaccgctgggtatatacccaaaagagaataaactattctaccaaaatagcacatgcacttgttggttcatcactacactattcataagaggaaggacctgaatcaacctacgtgcctattcatggtaattttttatttttttgagatgacgtctcactctgttgcccaggctggagtgcagtggcacgatctcaactcactacaatctccacttcccaggttcaagcaatcctccttcctcagccacccgagtagctgggactataggcgcatgccaccaagcctggctaacttttgtatttccagtacagacggggtttcattacgttgtccaggatggtctcgatctcctgacctcatgatccacccgccttggcctcccacagcactgggattacaggcatcagccaccatgtccagcctattgatggtaaattgaatttaaaaagtgtcacatgtacagcaatactacttagcaaaaacaaacaaaaaaaacctcctttgcagcaacgttaacacaacaaaaggccattatacaaagcaaattaatgcagaaatggaaaatgaaaatactgcatattctcacttataaatggaaattaacactgggtacacatggacagaaaaacaaaaataatagacaactcttagagggtggagagagggagggaccaagaactgaaaaactgtctacttagtactatgctcactacctgattgatggaattactcatacttcaaacctcagcattatgcaaaatacccatgtaaaaaacctgtgtaggtacctcctaaatctaaaataaatttgaaaTTCTAAAAAGAggtcttactctctcacccagacaggaatacaataccatgattatagctcaatgcagcctcaagttcctggggaactcaaggaataatcttacgtcagcctccaacttcctgagactacaggaacattccacaatgcctgagtaatctgtgaaaatattttttaccaatagcttgtcacaatattgcccggggtagtgtcaaactcctggatttaagtaattgacagggtttggctctgtgtccccaatcaaatctcatcttaaattgtaataatccccacatgtcctgggagggaccctgtgggaggtaattgaatcatgggggtgggatcttcccatgctgttctcatgataacaaataagtctcatgtgatctgatggttttataagtggaggttcccctgaac--ggtctcttgcttgttccaataatggtgagacctccctaaccatgtgaaactgagaggccattaaaacttttttcatgataaattacatagtcttgtttat s panTro1.chrUn_random 63419750 2772 + 240967748 ttttaacttaaaatcattttattttcttttgctttttcattttatgcacaggatcttactttatctcctgggacagagtacactggtggaatcacagctcactgtaacctcaaatttcggaagtcaagcagtcatgccacctatgtctcctgagtaaatatgaccacagttgtgcacgttacccctcctgtatagtttctttaaaaaaatttgtacaaacagtatgttgctgtgttgcctcagctggtctcaaactcctggtctcaggcaatctgactgcttcagtctggaagtcgctgggcacaagccatcatacctggAATTGTTTCTCTTTTAagaaaaaagagctttaaatcattaatagtaaaaataaaacaaagaaaggtattgagtaacgataaagggttcaattcaacaagaagacttcactatcctaaatgtagatgcacccaactttggggaacatagagttatacaacaagtacagctagacctacaataagactcaagtagacacacacataatagtaggggaatgcaactccccactaagtgttcgacagaattatctagggcagaaacttaacaaagaaattctggagtttgattcgacacttgattcaattgaaactaacaggacatttatagtatatgcgaacacatcatctaaagaaagtaaattcttctcatctgctcacagaatatgacaggccacaatggaacaaagacaaaaattcaataccaagaaaatctcacaaaatcaccagaatgatattggaaattaaacaacttgctcctgaatgaattttggataaaacaaaaaaattaaggcagaaaattaaaaaagattttgaaatagaagagacacaatataacaaaatgtctgggttgtaggaagagctctgttaagaggaaagttgagagtgctaaatacctgcatcaagaagttagaatgatctcaaactaacaatttaacttcacacttagagaaactagaaaaataaaaactaacttaccccaaagctagcagaatgggaaaaatattcataacctatgaacctgacaaaatctaatactcagaatatataagaaacttaaagaattcacaaggaaaaaattaccccatgaaaaagtgggcaataacagacactggttcaaaagaacacatacaagtggccaaataacatgaaaaaagcttatcatcactaaccccatcaaggaaatgtaaataaaaaccggacaataagacaccatcgtacaccagttagaatggcttttgttaaaaagtaaaatgataatagatgtttgatgaggttttagagggaaaaaaccacttatacactgttaataggaatgtaaattagttcagccactgtggagagcagcttggagattttccaaaataactgagagttaaactgtgattcaacccagcaatttcaccgctgggtatatacccaaaagagaataaactattctaccaaaatagcacatgcccttgttggttcatcactacacgattcataagaggaaggacgtgaatcaacctacgtgcctattaaaggtaattttttatttttttgagatgacgtgtcactctgttgcccaggctggagtgcagtggcactatctcagctcactacaacctccacctcccaggttcaagcaattctcctgcctcagccacccgagtagctgggactacaggcgcatgtcaacaagcctggctaacttttgtatttccagtagagacggggtttcattacgttgtccaggatggtctcgatctcctgacctcatgatccacccgccttggcctcccacagcactgggattacaggcatcagccaccgtgtccagcctattgatggtaaattgaatttaaaaagtgtcacatgtacagcaatactacttagcaaaaacaaacaaaaaaaacctcctttgc-gcaacgttaacacaactaaaggccattatacaaagcaaattaatgcagaaatggaaaatgaaaatactgcatattctcacttataaatggaaattaacactgggtacacatggacagaaaaacaaaaataatagacaactcttagagggtggagagagggagggaccaagaactgaaaaactgtctacttagtactatgctcactacttgagtgatggaattactcatacttcaaacctcaggattatacaaaatacccatgtaaaaaacctgtgtaggtacctcctaaatctaaaataaatttgaaaTTCTAAAAAGAggtcttactctctcacccagacaggaacacaataccatgattatagctcaatgcagcctcaagttcctggggaacacaaggaataatcttacatcagcctccaacttcctgagactacaggaacattccacaatgcctgactaatctgtgaaaatattttttaccaatagcttctcacaatattgcccaggggagtctcaaactcctggctttaagtaattgatagggtttggctctgtgtccccaatcaaatctcatcttaaatggtaataatccccatatgtcctgggagggaccctgtgggaggtaattgaatcatgcgggtgggattttcccgtgctgttctcatgataacaaataagtctcatgtgatctgatggttttataagtggaggttcccctgaacaaagtctcttgcttgttccaataatggtgagacctccctaaccatgtgaaactgtgaggccattaaaacttttttcatgataaattacatagtcttgtttat a score=1092660.0 s hg17.chr7_random 229813 12403 + 778964 gtccttattatcagcatgataatggattaatacagtagccctcttgccttagctttcaaagtagctggagtcacatgcacgtgtcactgtgcctggctaaaacacctagcttaaagatgctcagtcagctaaagaagaatatagaaaactaaacagaaaaagaaaacaatgcatgaagataatgagattatcaaagaagtgattaaaagtgcaaaatagaaacaaagtgtagagctgaaaagtaaaatacctgagtttagagattcactagaaagtccaacaacaggtttgatctagcaggaaaaaatacagcaagcctcataagaagtcatttgaaattatagggtgaggaggctaaaaataatttaaaaaattaagagagcctaagggaattataggataccattaagatggccaatatactcataatgggaattctaaaataaaaagagaaaagagagcagcaaaattatttcaagaaacaaacagtgacagagaactcagaatttgagggagaaaatgacctaaaatttaatgaaactttaccaactctaactagtaacaacacagggagacccatgacaagacacattataatcagagattcaaaagttaaaacaccgagaatcttgaagtcagcaagaaaaaagtgacttagcatgtacaagtttacccctgcaggatgaccagcagatgtctcagcaaaaaaacttacaggtaagaggttgtaggatgacatactcaaagtgctgaaaaaatggcaactaccagccaagaacactatg-tctgccaaaactatcatttcaaatgaattaaaaaataaaaataaagaatattcaagatcaacaaaaactgtataaatttatacccactaggcctgtcttaaaaaatgctaaatagtcattcacattaaaaaatgaaataatgatgagagcaacacaaaattatgtaaaata-tgacattttctaatagagaaaattatgtacacaatc-ataatattctttgtaattataatgAAGATGCACAGAATACTTTAATTCTGctatatatttgagacaacaaagacttaaaaatgactataaatctgtgccaacagattcacaacacaaaatgatataatttgtgacatcaataaaacacatagggagccataaagaggcagggttttatatgtaatagtagttaTTCTTGGTAATATCTATAGTAACAACAAAGAAAATACCTACAGTTCTTaggattttgagactagtctgggtaacatggaaaaaccctgtctctatgcaaaataacaactgttagccaggagtagtggtgcacatctgtggtcccaggtactcagaaggctgtggtgggaggattgtttgagttgagcctgagaggcagagcttgagtaagcagagattgtgccactgcactccagcctgggtgacagagcaagaccc-tgtcaaaaaaaaaaa----ggaaaTAcctatagtacacacacagaaagacatacacacacagagagtagtgagaaaagaattaaaacatgtcactacaaaaatcaatagtacactaagaaagagaacaagagagaaaaacaggaacgaaatagctacaggaccggccaggggcggtggctcacgcttgtaatcctagcaatttgggaggccgaggtgggtggatcaacgaggtcaggagatcgagcccatcctggctaacacggtgaaaccacgtctctaccaaaaaaaaaaaaaaaaaaaaaaaaaatagccgggcgtggtggcaggctccggcaatcccagctgctggggaatctgagacaggagaatggcatgaacccgggaggcggagcttactttgagccaagatctcaccactgcactccaacctgggcgacagagagagactccgtctcaaaaaaaaaaaaaaaaat-------gctgcaggacctaaaacaaaaaagaaacaaaatgcaatacgaaatcattcccttttagtaattttttttatataaatcaattatgtcaatcaaaaacatactttcactaaataaattcatgaaacaagattcaactctctgcttcctacaaATAACCAAATTATGATCTGGAACACATATAACCTGTACATGAAAGAATAATAAAAAATATTAAATGCAAAATCAAATACTGTCATGGTAGACAAAATACATATTATATCAAAAACTTCCTCAAGAGACAAGAGGAAAAGGacaataaaaacaacaacaataaaagcaacaacaataaagcaacatacaacaataaaagcaaaaacattaaaacaacatacaacaataaaagcaacaacagtaacGCatgtgccttacatcacagttcccaaacatatgaagcaacattttacagaattgaaacatgaagtagccagcacctgataacagtaaatgacttttatatctgacttttagtaatgtaaattaaaaaacaaacataagatggataagtaaacagaggatttcaacaacacgataggacaattagacctaacagtcacatttatatttctccactcaacagtagaatctgcaatacttttaatcacacatgccacaatattccagatagaccacctgttaagttaaaagatgaat-cttagcaaatttaagcaga-tggaattacaaaattattgctaactatgatacaataaaacaagaagttaaaaacactagcatgtcaaagaataagtaaaaattaaacaacaaattctcaaacaCACTCTTGTTC-AAGAGGTTATagacttaatattgttaacatgtcactactaccgaaagtggttaactgattcaatgctctttcttttcttttctttctttttatcttgagatgggtttttgctcttgttgcccagggtggagtgcaatggtgtgatctcagttcactgcaacctccacctcctgggttcaagccattctcctgcctcagcctcctgagtagctgggattacaggcaagtgccaccaaacctggctaattttgtatttttagtagagatggggtttctccatggctggtctcg-aactcctgacctcaggtgatccaccttcctcagcctcccaaagtgctgggattacaggcatgagccaccacccctagttgattcaatatactttctatcaaaataccaatgaaactttttgcagaagttttaaaatattctataatttttatggaatttcaagtgattgcaaacagccaaataatattgggaaaaaaatataaagatagaggcatcatactttctaatttcaaaacatactata-aaggtatagtaatcaaaactgtttggtactgacagaaagacaaatgaatgatgaaacagatgagtg--ttcggacataagacatcatgggtttagtaaacttatttttaaaaactgttccaagaattcacaataaggaaagaacagtctcttcaacaaacagtattgagaataataaaaatt-tacaaggaaaaaataacaaagttacaccttaccttgcaccaataaaaacataaactcaaggccgggtgtggtggctcacacctgtaatcccagcactttgggaggctgaggcaagtgaatcacaaggtcaggagatcaagaccatcctagccaacatggggaaaccacgtctctactaaaaatacaaacaaaaattagttggcggtggtggcacacgcctatagttccagccactcaggaggctgaggcaggagaatctctggaacccgggaggcaagagtttcagtgagcggagatcacaccactgtgcttcagcctggtgacagagaaagactccacctcatataaagaaataaaCTCAAAATAACTAAtttttgttagttattaaaatggaattttaaactttatttttcagatattttgctatcagcatacagaaagctgctactctgttgattttctgcaatgttacagaatttgtttagtagttctattaggttttggtgtagtgtttagagtttttcacatataagattattttgtccacaatcagagaccatttgacttcatcctttcctattagtatgagtttatttctacctcttgcataatgtccttggctaagacttccagtactatgttgaataagaggtctgaaagtggggatgattagtcttgttccggatctcagagagaaagctttcagcttttccttattcagtataatgttagcattgctttgtcataaatggcctttattgtgttgagaaacataacttctattcctaatttgttgagagttttcatcataatgaatgttgaatttcatccaacgtttcttctgcatAAGCAAAAGGTACAAAAATTAAAATACTTAAtgtgatggttaatactggctgtcaaattgattggattggaggatagaaagcattgatcctgggtgtgcctgtgagggtgttgacaaacgagattaacatttgagtcaatgggctgggaaagggaggcccactcttaattgggtgagcgccatctaataagctgccaatgaatataaagcaggcaggaaaacgtaaaaaggagagactggcctaagctcccagtctacatctttctcctgtgctggacgtttccagccctcaaacaccagactccaagttcttcagctttgggacgtggactgcctctccttgctcctaaaacttgcagacaacctattgtgagatcttgtgatcTCTCTAGGGAGCCCGACtaatacacctagcaacaaacttaacttaaaagg-tacaagatctctactctgaaaatgacaaaacatggataaaaaatataaaatacaaatgaataaatgaaaaaatcttgtgtttatacactggaagaatactgttaat-----tacccaaagtgatctagagac-taacgtgatttttatcaaaatatcaatgacattttttcacagaaatagaaaaaatattttaaatttatgtggatccacaaaaaactctgaatagacaaataactttgagcaaaataagcaaagctaaaggcatcactttatcaaacttcaaaacttgctacaaagctatagtaaccaaaacagcactgtactggcataaaaacaaacacatagactaatgtgcccaagaagcccagaagttagtttatgcacctaaagccaactgattgtcaacaaaattgccaagaacacactttagggaaaagctaatttcttcaataaatgatgcagggccatttaaatatttaaattcagaaaaattatactagacccctgtgccttgccatatatgaaaatcaattcaaactaaagacttaaatgtaatgctatcaattatgaaactattagagaaaaactaaaaaatgctttataacattcgacggggaaaggattattaaaataacatgtcaaaacataggcaacaaaatcaaaaataagcaaacaacattatgtcaaactaaaatgcttttccatattaaaaaaa-ctaaaagattgaagagacagcttaggcaataaaagaaaatgctttcaggctatacatatgacaaaaggctaatattcagaataaataagaaactttaaaatctcaaaataaaatacacttataatctaatt-aaaaaatgcaaaacatcttaatagatgtttgtcaaaaagtgatacaaaaatggctaactggaacataaaaatatgttctacattactaatcactaaggaaatgaaaatccaaaccacaatgaggtaccgcctcactcccatttagaatggctataataaaaataaataaataaataaaacaagtactaatgaggatataaaatgagtgaatgtatacattgttggtggaattgtaaattagtatggccactatagaaaatactatggaggttt-ctgaaagaaattaaaaatagatgtattacatgatccagcaattttactcctgcatgtatatacaaaagaaaggatatcactgtgtcaaaaagatatttgcatttccatgttagttacagaactagttataatagcttatatatggaatcaattcaaatgtacagcaacagataaatggataaggaaaatgtactatatatgcacagtgaaatactattcagctataagaaagg-ataaaattctgtcagtt-aaaagagcatggatgaaccttgagcataccatgttaagtaaaataagccacatagagaaacacaaatactttatgatcttattatctcactcatttgaggaacctgaaaaaaagggttgatataagcaaagagtacaacaggggttcccagagactgaagcagggagatgggaaaaggcagcttcaaaagtattgtgttacaattagataggagaaataagtttttgttttttgttacacggcagaataataataattaatgaaaagttatctcaaattacaaaatagctaaaagagaccagttgtggtggcacattcctgccatccatacattttgggagaatgaggtaggagaatcacttgacgtcagaagttcaagatgagcctggacaacatagtgtgaccctgtctctatgaaaaattaaaacattatccaggcatggaggcaggttcctgtagtctcagctaattgggaagctgaggttagaagattgtttgaggttacagtgagctaggattgcaccactgcactccaatctgtgtgttagagcaagatcctgtctctaaaaaaagttaatatataaagatataaaaaaatagctagagaagaagcttttgaatgttctcaccacaaaaataacaaatgtatgaggcaataattacactaagtactctgatttttattgctatacaacatatatacataattgtttccccaaaatttgtacaattacatgtgtcaattttaaaatatgaagactataatgtaaaatctatagctgtaaaattcctagcacaatacagaagggtgaagcttcatgacaattggtctcgg-caataatttgggggatgtaacatcaacgaatcagacaacaaaagcaagggaa-tacacatgg-tactaaatcaGTGTGTGAAAAa-tatcccaaacagg-caaagcagaacatggaatagatatatgcacatttatgtacactgtagcattactcacaaacatactacctggaagcaaatgtacctttaaggatgagtagattcaacaaacagggcacgtatattcactgggatagcattcagccttaaaaataaggaaatcttgaaaagtactacaataaggacaaatctcgaaaacattctgttaagtaaaacaagacagtcaaaaaggaaaactgtataattacacctatgtaaaatatttagtcaaactcaaagaaaccaagtgttgtagtctcagcagtgcaccaagatgtaacagtctctcatagtctgagatagcatcgaaagttctttgttctacttctagggagattaaggagcgtgaacacaaaggtgaggttagagtgaaagtttgataagcaagagaagaaagctctttgccagcagagatagtttctgaatggggtgacctctgtgaggctggggcccaaggtttttatggactgggaaaggaagagaaggaaatgtgcttagttcacaggctgtcttgaaaaaagtgtggctcagcttggcccaggactttggcccgggaccaatcaggagctgaagggatgattcatacatgctatttagattggcccaggacttatcagaagccaaagtgaaagcttggcgcaggagcttgtcccgggagcaatcaggggctgaagtaattattcacagaggtcagacttacagtccaaataaaggagagtgtcgaccggaatgcaccagagcccactgtgcttatgcccacagaaggagaagaaacattttcctgggagcgcactgactgcacaaagtacaaaggcgtttctttttttctttttcttttctttctttctttcattttttttttgagatgtactttcttattatttatttatttatttatttatttatttatttatttatttattttgagacgtagttttgctcttgttgcccaggctggagtgcagtggtgcgatctcggcccacagcaaactccgccacctggatgtaagtgattctcctgcctcagcctcccaagtagctgggattacaggcatgaggcgccatgcccggctaattttgtatttttagtagagacagggtttctccatgttggtcatgctggtctcgaactcccgacctcaggtgatccgtccacttccgcc---caaattgctggaattacgggcatgagccaccatgcctggccaaacaaaggcaattctatgccaggtcggtcttgttcccttatctcagtgagctggaggtttgtaccagtttttatccaaatgggccagaggtttttctgtctgggcagccatgggcaggtctccaagcacaacaccatgtgctagttaccttgttagtgtctgcagcttgattttttccaggattccttttatgttatgcagggatgagatactgacccaagggccagggactttccagggacccttctcttgctatctaactaaagcaagctaactaacttgtttcagaattaat-gagtattcacttttaattttgtaagacaaaaattatctaaaacctattgcaaaaaaaa-tagaactatacttaccacttctaaaccatatacttaaaaTGTTAGAAATGAAAATGGCA-TGT-TTTTAACTACAATTAGAAATTTAGGACTACCTAAAAGGCACGGTTACAAAATCTTCAAACATCCCCTTCAAATAACAAAGGGTTCTTCTCACATAATTTTTTAGATT--TAAACTATAAGTTGATTGTAAATTTAAGATTATTTCCCTGACTACTCACCAAGATAGAATAAAATAATCACTAGAAACCAAGAAAagaggaaaatttatagcactaatgtccacatcaaaaagctagaaagggccagtcatggtggctcatgcctgtaattccagcactttgggaggctggggtaggcagatcacttgagaccaggtgttcaggaccagcctgaccaacagcaaaaccatatctctacaaaaaaatacaaaaattagctaggtgtggtgattcacatctgtaatcccagctactcaggaggctgagacagcagaagtgacttaaaaccgagaagaggaggttgcagtgagccgagattatgccactgtactccagtctgggtgacagagtgaaactctcccacaagaaaaaaaaaaaaattagaaagatctgaagttaacagcc-taacatcttgattaaaagaacaagaaaaccaagtgaaaacaaacctgaaagctagcagaaaacaagaaatagcc-aagatcagagtagagctgaaggagatagagacactgagaa-ctcttccaaaaaaaaaaaaaaaaaaaaaa-aactcaaccaatccaggagctgtttttatgaaaaaaaaaaaaaaaaaattaataaac-tagatggaacactagttaggcaaataaataagaaaagaaagaaccaaacacaaatagaaataataagggagatatcatcactgatcccatggaaataagaacaatgatcagagaatactataaacacctctatgctcataaaccagaaaatctagaagaaatggacaatttccttgcaaaataaactctccacaagactgaaccctgaatagatcaataatgtgttctgaaattgaggcagtaagaactagcctaccaagcaagctgaatttgacttgaggtaaagaggagatagtacattttctcctaaaactatccaaaaaaaattgaagacaaagaagttctgtctaactcattctatcaggccagcatcatcctgataccaaaacctaacatagatacaacaacaacaacaacaaca---------------------catcatgccaatgtctttgatgaacactgtgcaaacatcctcaataaaatactggcaaaccaaacccagcagcacattaaaaagtgcatccaccacaatggaattggctttgtccccaggatgcaaggttgattcaacatatgcaaatcaacaaatgtgactcatcacataaagaaaactaaataaaaaaaa--cacatgattacctcaatagatgcagaaaaagcacccaataaaattcaacattccttcacgtttaaaattctcaataaactaggaactgaagaaacatacctcaaaataagaagagccatatacaacaaacccacagccaatatcatactgaatgtgcaaaagctggaaacattccccctgaaaaccggcacaagaaaagtatgctctctctcaccactcgcattacaactcccattcggaaaacttgtccaggaaaatcaggccagaggaagaaataaacagtattcaaatagaaagagagaaagtcaaattatctttgtttacagatgacctgaccctatatctagaaagcctcttcgtctcagccccaaagcttcttaaggtgataagcagcagtagcaaaatctcaggatataaaatcaatctgcaaaagtagctagcattcccatacacaagcaacaggcaagcagggagacaaatcatgaatgaa-ctttcattcacatttgctataaagagaaaaaaata-ccaaggaatacagctaagaaggaaagtgaaggatatcttcaaggagaactacaaacaactactcagaggaatcagagtggacacaaaacaaatggagaaacattccat--gctcacggagagaaagaatcagtaccacgaatatgagcatattgccctaagtaatttatagattcaatgctgttcccattgaactactgacattcttcagataattagaaaaaaaaaactttttaaaattaaaatggaaccaaaaaagagcccaaatagccaagccaaccttaagaaaaaaaaaaaaaaaaagctgaaagggtcattgcctaacttcaaactgtactagaagagtacagtaacaaaaacagcatggtactggtatagaaacagacacatagacaaatgaaacaaaatagagagcatagaaataaagccaaaaacctacaacaaactgatctttgacaaa-gtcaacaaaaacaaggaattagggaaaagtctccctattcaataaatagtgctaggataactggctagtcatgtgcagagaattaagactggaacccttcctaacaccatagacaaaaattgactcaagatggattaaagacttgaatgtaaaacccaaaactataaaaaccttagaagaaaaaatctagaaaataccattcaggatatagtcatgaggaaagatttgatgacaaaaagaccaaaagaaatagcaacaaaagcaaaaattgactaatggggtctaattaaactaaagagattccacagagccaaagaagctatcatcagagcagagaagctagagaatgggagaaaaattttgcaacctattcatctgacaaatatctaatacccagaatctatgagggacttaaaatttacaagagaaaaacaaacaaccccattaaaaagtggtcaaaggacatgaacagacatatctcaaaagaagacatacatgtgcccaacaaacatggaaagctcaacatcactgataagtggataaatacacatcaaaacaacaatgagataccatctcacaccaattacaatgtctattaataaaaagtaaaaaagaaataaaaacagatgctggtgaggttgtggagaaaagggaacacttttacactgttggtgggattgtaaattatttcaagcattgtggaagagagtgtggagattcctcaaagacctagaagcagaaataccatttgacccagcaatactattactgggcatacacccaaaggaatataaatctattttaaataaacatgtatacatatgttcattgcagcaatatttacaatagcaacgtcatgtaatcaatctacatgcccatcaatgatatactggataaagaaaatgtggtacacatacaccatggaacactatgaagccataaaatgtaatgagatgatgtcctttgcagggacatggttggaatttgaagccactactcccagcaaactaatgcaggaacagaaaaccaaacaccacctattattattctaacttattagcagaagcagatcaatgagaacacatggacacatcaggaagaacaacacacactggacacctgtttcatggcatgggggaggggaaggagagcagcaggaagaatagctgcggatgctgggcttagtacctgggtgatgagatgatctgtgcagtaaagcacaatggcacacgtttatctatgtaagagacctgcatatcctgcacatggacccctaaacttaaaataaaagttgaaaaaaaaGCTTATCAcatatggaccactgaacttaaaataaaacttgaaaaaaCA-TGAGTATGAGGT s panTro1.chrUn_random 63423299 12426 + 240967748 GTCCTTATTATCAGCATGATAATGGATTAATACagtagtcctcttgccttagctttcaaagtagctggagttacatgcacatgtcactgtgcctggctaaaacacctagcttaaagatgctcagtcagctaaagaagaatatagaaaactaaacagaaaaggaaaacagtgcatgaagataatgagattatcaaagaagtgattaaaagtgcaaaatagaaacaacatgtagagctgaaaagtaaaatacctgagtttagagattcactagaaggtccaacaacaggtttgatctagcaggaaaaaattcagcaagcctcataagaagtcacttgaaattatagggtgaggaggctaaaaataatttaaaaaattaagagagcctaagggacttacaggataccattaagatggccaatatactcataatgggaattctaaaataaaaagagaaaagagagcagcaaagttatttcaagaaacaaacagtgacagagaactcagaatttgagggagaaaatgacctaaaatataatgaaactttaccaactctaactaataacaacacagggagacccatgacaagacacattataatcagagattcaaaagttaaaacaccgagaatcttgaagtcagcaagaaaaaagtgacttagcatgtacaagtttacccatgcaggatgacaagcagatgtctcagcaaaaaaacttacaggtaagaggttgtaggatgacatactcaaagtgctgaaaaaatggcaagtaccagccaagaacactatgctctgccaaaactatcatttcaaatgaattaaaaaataaaaataaagaatattcaagatcaacaaaaactgtataaatttatacccactaggcctgtcttaaaaaatgctaaatagtcattcacattaaaaaatgaaataatgatgagagcaacacaaaattatgtaaaataatgacgttttctaataaagaaaattatgtacacaatCCATAATATTCTTTGTAATTATAATGAAGATGCACAGAATGCTTTAATTCTGCTATATATTTGAGATAACAAAGACTTAAAAATGACTATAAATCTGTGCCAATAGATTCACAACACAAAATGATATAATTTGTGACATCAATAAAACACATAGGGAGCCATAAAGAGGCAGGGTTTTATATGCAATAGTAGTTTTTCTTGGTAATATCTATAGTAACAACAAAGAAAATACCTACAGTTCTTaggattttgagactagtctgggcaacatggcaaaaccctgtctctatgcaaaataacaactgttagccaggagtagtggtgcacatctgtggtcccaggtactcagaaggctgtggtgggaggattgtttgagttgagcctgagaggcagagcttgagtaagcagagattgtgccactgcactccagcctgggtgacagagcaagacccctgtcaaaaaaaaaaaaaGAGGAAGTACCTATAGTACACACACACAAAGACatacacacacagagagtagtgagaaaggaattaaaacatgtcactacaaaaatcaatagtacactaagaaagagaacaagagagaaaaataagaacgaaatagctacaagaccggccaggggcggtggctcacgcttgtaatcctagcaatttgggaggctgaggtgggtggatcaacaaggtcaggagatcaagcccatcctggataaaacggtgaaaccacgtctctaccaaaaaaaaaaaaaaaaaaaa------tagccgggcgtggtggcaggctcctgcaatcccagctgctggggaatctgagacaggagaatggcatgaacccgggaggcagagcttacattgagccaagatctcaccactgcactccaacctgggcgacagagagacactccatctcaaaaaaaaaaaaaaaaaaaaaaaaagctacaggacctaaaacaaaaaagaaacaaaatacaatacgaaatcattcccttttagtaatttttta-atataaattaattatgtcaatcaaaaacatactttcactaaataaattcatgaaacaagattcaactctctgcttcctacaaATAACCAAATTATGATCTGGAACACATATAACCTGTACATGAAAGAATAATAAAAAATATTAAATGCAAAATCAAATACTGTCATGGTAGACAAAATACATATTATATCAAAAACTTCCTCAAGAGACAagaggaaaaggactataaaaacaacaacaataaaagcaacaacaataaagcaacatacaacaataaaagcaacaacattaaaacaacatacaacaataaaa-caacaacagtaacgcatgtgccttacatcacagttcccaaacatatgaagcaacattttacagaattgaaacatgaagtagccagcacctgataacagtaaatgacttttatatctgacttttagtaatgtaaattaaaaaacaaacataagatggataagtaaacagaggacttcaacaacacgatagaacaattagacctaacagtcacatttatatctctccactcaacagtagactctgcaatactttcaatcacacatgccacaatattccagatagaccacctgttaagttaaaaaacgaattcttagcaaatttaagcagaatggaattacaaaattattgctaactatgatacaataaaacaagaagttaaaaacactagcatgtcaaagaataagtaaaaattaaacaacaaattctcaaacacactcttgttcgaagaggTTATagacttaatatttttaacatgtcactactaccgaaagtggtttactgattcaatgctctttcttttcttttctttctttttatcttgagatgggtttttgctcttgttgcccaaggtggagtgcaatggtgtgatctcagttcactgcaacctccacctcctgggttcaagccattctcctgcctcagcctcctgagtagctgggattacaggcaagtgccaccaaacctggctaattttctatttttagtagagatggggtttctccatggctggtctcgcaactcctgacctcaggtgatccaccttcctcagcctcccaaagtgctgggattacaggcatgagccaccacccctagctgattcaatatactttctatcaaaatatcaatgaaactttttgcagaagttttaaaatattctataatttttatggaatttcaagtgattgcaaacagccaaataatattgggaaaaaaatataaagatagaggcatcatactttctaatttcaaaacatactatataaggtatagtaatcaaaacagtttggtactgacataaagacaaatgaatgatgaaacagatgagagagttcggacataagacctcatgggtttagtaaacgtatttttaaaaactgttccaagaattcacaataaggaaagaacagtctcttcaacaaacagtattgggaataataaaaattgtacaaggaaaaaataacaaagttagaccttaccttgcaccaataaaaacataaactcaaggccgggtgtggtggctcacacctgtaatcccagcactttgggaggctgaggcaagtgaatcacaaggtaaggagatcaagaccatcctagccaacatggggaaacaacgtctctactaaaaatacaaacaaaaattagttgttggtggtggcacaggcctatagttccagccactcaggaggatgaagcaggagagtctctggaacccgggaggcaagagtttcagtgagcggagatcacaccactgtgcttcagcctggcgacagagaaagactccacctcatataaagaaataaaCTCAAAATAACTAAtttttgttagttattaaaatggaattttaaactttatttttcagatattttgctatcagcatacagaaagctgctactctgttgattttctgcaatgttacagaatttgtttagtagttctattaggttttggtgtagtgtttagagtttttcacatataagattattttgtccacaatcagagaccatttgacttcatcctttcctattagtatgactttatttctacctcttgcataatgtccttggctaggacttccagtactatgttgaataagaggtctgaaagtggggatgattagtcttgttccagatctcagagagaaagctttcagcttttccttatttagtataatgttagcattgctttgtcataaatggcctttattgtgttgaggaacataacttctattcctaatttgttgagagttttcatcataatgaatgttgaatttcatccaacctttcttctccatAAGCAAAAGGTACAAAAATTAAAATACTTAAtgtgatggttaatactggctgtcaaattgattggattggaggatagaaagcattgatcctgggtgtgtctgtgagggtgttgacaaatgagattaacatttgagtcagtgggctgggaaagggaggcccactcttaattgggtgagcaccatctaatcagctgccagtgaatataaagcaggcag-----------------agactggcctaagctcccagtctacatctttctcctgtgctggacgcttccagccctcaaacaccagactccaagttcttcagctttgggacgtggactgcctctccttgctcctaaaacttgcagacaacctattgtgagatcttgtgatcTCTCTAGGGAGCCTGACtaatacacctagcaacaaacttaacttaaaagggtacaagatctctactctgaaaacgacaaaacatggataaaaaatataaaatacaaatgaataaatgaaaaaatcttgtgtttatacactggaagaatactgttaatatagctacccaaagtgatctacagacgtaaagtgatttttatcaaaatatcaatgacattttttcacagaaatagaaaaaatattttaaatttatgtggatccacaaaaaactctgaatagacaaataactttgagcaaagtaagcaaagctaaaggcatcactttatcaaacttcaaaacttgctacaaagctatagtaaccaaaacagcactgtactggcataaaaacaaacacatagactaatgtgcccaataagcccagaagttagtttatgcacctaaagccaactgattgtcaacaaaattgccaagaacacactttagggaaaagctaatctcttcaataaatggagcagggccatttaaatatttaaattcagaaaaattatactagaccccagtgccttgccatatgtgataatcaactcaaactaaagacttaaatgtaacgctatcaattatgaagctattagagaaaaactaaaaaatgctttataacattagacgggaaaaggattattaaaataacatgtcaaaacataggcaacaaaatcaaaaataagcaaacaacattatgtccaactaaaatgcttttccatattaaaaaaaactaaaagattgaagagacagcttaggcaataaaagaaaatgctttcaggctatacatatgacaaaaggctaatattcagaataaataagaaactttaaaatctcaaaataaaatacacttataatctaatttaaaaaatgcaaaagatattaatagatgtttgtcaaaaagtgatacaaaaatggctaactggaacataaaaagttgttctacattactaatcaccaaggaaatgaaaatccaaaccacaatgaggtactgcctcactcccatttagaatggctataataaaaaaaaattaataaa----acaagtactaatgaggatataaaatgagtgaatgtatacattgttggtggaattgtaaattagtatggccactatagaaaatactatggaggttttctgaaagaaattaaaaatagatgtattacatgatccagcgattttactcctgcatgtatatacaaaagaaaggatatcactgtgtcaaaaagatatttgcatttccatgttagttacagaactagttataatagcttatatatggaatcaattcaaatgtacagcaacagataaatggataaggaaaatgtactatatatgcccagtgaaatactattcagccataagaaagggataaaattttgtcagtttaaaggagcatggatgaaccttgagcataccatgttaagtaaaataagccacatagagaaacacaaatactttatgatcttattatcccactcatttgaggaacctgaaaaaaagggttgatataagcaaagagtacaacaggggttaccagagactgaagcagggagatggtaaaaggtagcttcaaaagtattgtgttacaattagataggagaaataagtttttgttttttgttacacagcagaataataataattaatgaaaaggtatcgcatattacaaaatagctaaaagagaccagttgtggtggcacattcctgccatccatacattttgggagaatgaggtaggaaaatcacttgaagacagaagttcaagatgagcctggacaacatagtgtgaccccgtctctatgaaaaatttaaacattatccaggcatggaggcagcttcctgtagtctcagctaattgggaagctgaggttagaagattgtttgaggttacagtgagctaggattgcaccactgcactccaatctgtgtgttagagcaagatcctgtctctaaaaaaagttaatacataaagatataaaaaa-tagctagagaagaagcttttgaatgttctcaccacaaaaataacaaatgtatgaggcaataattacactaagtactctgatttttattgctatacaacatatatacataattgtttccccaaaatttgtacaattacatgtgtcaattttaaaaaattaagactataatgtaaaatctatagctgtaaaattcctagcacaatacagaagggtgaagcttcatgacaattggtctcgggcaataatttgggggatgtaacatcaacggaccagacaacaaaagcaagggaaatacacaTGGGTACTAAATCAGTGTGTGAAAAAatatcccaaacagggcaaagcagaacatggaatagatatatgcacaattatgtacactgtagcattactcacaaacatactacctggaagcaaatgtacctttaaggatgagtagattcaacaaacagggcatgtatattcactgggatagcattcagccttaaaaataaggaaatcttgaaaagtgctacaataaggacaaatctcgaaaacattctgttaagtaaaacaagacagtcaaaaaggaaaactgtataattacacctatgtaaaatatttagtcaaactcaaagaaaccaagtgttgtagtctcagcagtgcaccaagatgtaacagtctctcatagtctgagatagcatcgaaagttctttgttctacttctaaggagattaaggagcgtgaacacaaaggtgaggttagactgaaagtttgataagcaagagaagaaagctctttgccagcagagatagtttctgaatggggtgacctctgtgaggctggggtccaaggtttttatggactgggaaaggaagagaaggaaatgtgcctagttcacaggctgtcttgaaaaaagtgtggctcagcttggcccaggactttggcccgggaccaatcaggagctgaagggatgattcatagatgctatttagattggcccaagacttatcagaagctaaagtgaaagcttggcgcaggagcttgtcccgggagcaatcaggggctgaagtaattattcacagaggtcagacttacagttcaagtaaaggagagtgtcgaccggaatgcaccagggcccactgcgcttatgcccacaaaaggagaagaaacattttcctgggagcccactgactgcacaaagtacaaaggcgtgtctttttttcgttttcttttctttaattctttcattttttttttgagatgtactttcttatcatttatttatttatttatttatttattt----------------tgagacgtagttttgctcttgttgcccaggctggagtgcaatggtgtgatctcggtccacagcaaactccgccacctgggtttaagtgattctcctgcctcagccacccaagtagctgggattacaggcatgaggcaccacgcccggctaattttgaatttttagtagagacggggtttctccatgttggtcatgctggtctcgaactcctgacctcaggtgatccgcccacttctgcctcccaaattgctggaattacgggcataagccaccgtgcctggccaaacaaaggcatttctatgccaggtcggtcttgttcccttatctcagtgagctggaggtttgtacaagtttttatccaaatgggccagaggtttttctgtctgtgcagccatgggcatgtctccaagcacaacatcatgtgctagttaccttgttagtgtctgcagcttgattttttccaggattccttttatgttatgcagggatgagacactgacccaagggccagggactttccagggacccttctcttgctatctaactaaagcaagctaactaacttgtttcacaattaattgagtattcacttttacttttgtaagacaaaaattatctaaaacatattgcaaaaaaaaatagagctatacttaccacttctaaaccatatacttaaaatgttagaaatgaaaatggcagtgtgttttaactacaattagaaaTTTAGGACTACCTAAAAGGCACGGTTACAAAATCTTCAAACATCCCCTTCAAATAACAAAGGGTTCTTCTCACATAATTATTTAGATTCTTAAACTATAAGTTGATTGTAAATTTAAGATTATTTCCCTGACTACTCACCAAGATAGAATAAAATAATCACTAGAAATGAAGAAAagagggaaatttatagcactaatgtccacatcaaaaagctagaaagggccggtcatggtggctcatgcctgtaattccagcactttgggaggctggggtaggcagatcacttgagaccaggtgttcaggaccagcctggccaacagcaaaaccatatctctacaaaaaaatacaaaaattagctaggtgtggtgattcacaactgtaatcccagctactcaggaggctgagacagcagaagtgacttaaaaccgagaagtggaggttgcagtgagccgagattatgccactgtactccagcctgtgtgacagagtgaaactgtcccacaagaaaaaaaaaaaa-ttagaaagatctaaagttaacagccctaacatcttgactaaaagaacaagaaaaccaagtgaaaacaaacctgaaagctagcagaaaacaagaaatagcccaagatcagagtagagctgaaggagatagagacactgaaaaactcttccaaaaaaaaaaaataataactaataactcaaccaatccaggagctgtttttatgaaaaaaaaaa--------ttaataaacctagatggaacactagctaggcaaataaataagaaaagaaagaacaaaacacaaatagaaataataagggagatatcatcactgatcccatggaaataagaacaacgatcagagaatactataagcacctctatgctcataaaccagaaaatctagaagaaatggacaatttccttgcaaaataaactctccacaagactgaaccctgaatagatcaataatgtgttctgaaattgaggcagtaagaactagcctaccaagcaagctgaatttgacttgaggtaaagaggagatagtacattttctcctaaaactatccaaaaaaaattgaagacaaagaagttctctctaactcattctgtcaggccagcatcatcctgataccacaacctaacatagatacaacaacaacaacaacaacaacaacaagccacaacacaacacatcatgccaatgtctttgatgaacactgtgcaaaaatcctcaataaaatactggcaaaccaaacccagcagcacattaaaaagtgcatccaccacaatggaattggctttgtccccaggatgcaagattgattcaacatatgcaaatcaacaaatgtgactcttcacataaagaaaactaaattaaaaaaaaccacatgattacctcaatagatgcagaaaaagcacccagtaaaattcaacattccttcacgtttaaaattctcaataaactaggaactgaagaaacatacctcaaaataataagagccatatacaacaaacccacagccaatatcatactgaatgtgtaaaggctggaaacattccccttgaaaaccggcacaagaaaagcatgctctctctcaccactcccattacaactcccgttcggaaaccttgtccaggaaaatcaggccagaggaagaaataaagagtattcaaatagaaagagaggaagtcaaattatctttgtttacagatgacctgacccaatatctagaaagcctcttcgtctcagccccaaagcttcttaaggtgataagcaacagtagcaaaatctcaggatataaaatcaatgtgcaaaagtagctagcattcccatacacaagcaacaggcaagcagggagacaaatcatgaatgaatctttcattcacatttgctataaagagaaaaaaatatccaaggaatacagctctgaaggaaagtgaaggatatcttcaaggagaactacaaacaactactcagaggaatcagagtggacacaaaagaaatggagaaacattccattcgctcatggagaggaagaatcagtaccacgaatatgagcacattgccctaagtaatttatagattcaatgctgttcccattgaactactgacattcttcagataattagaaaaaaaaaactttttaaaattcatatggaaccaaaaaagagcccaaatggccaagccaaccttaagaaaaaaaaaaaa-----gctgaaagggtcattgcctaacttcaaactgtactagaagagtacagtaacaaaaacagcatggtactggtatagaaacagacacatagacaaatgaaacaaaatagagagcatagaaataaagccaaaaacctacaacaacctgatctttgacaaaagtcaacaaaaacaaggaattagggaaaagtctccctattcaataaatggtgctaggataactggctagtcatgtgcagagaattaaaactggaacccttcctaacaccatagacaaaaattgactcaagatggattaaagacttgaatgtaaaacccaaaactataaaaaccttagaagaaaaaatctagataataccattcaggatataggcatgaggaaggatttgatgacaaaaagaccaaaagaaatagcaacaaaagcaaaaattgactaatggggtctaattaaactaaagagcttctgcagagccaaagaagctatcatcagagcagagaagctagagaatgggagaaaaattttgcaacgtattcatctgacaaatgtctaatacacagaatctatgagggatttaaaatttacaagagaaaaacaaacaaccccattaaaaagtggtcaaaggacatgaacagacatatctcaaaagaagacatacatgtgcccaacaaacagggaaagctcaacatcactgataactggataaatacacatcaaaacaacaatgagataccatctcacacaaattataatggctattaataaaaagtaaaaaagaaataaaaacagatgctggtgaggttgtggagaaaagggaacacttttacactgttggtgggattgtaaattatttcaagcattgtggaagagagtgtggagattcctcaaagacctagaagcagaaataccatttgacccagcaatactattactgggcatacacacaaaggaatataaatctattttaaatatacatgtatacatatgttcattgcagcaatatttacaatagcaacgtcatgtaatcaatctacatgcccatcaatgatacactagataaagaaaatgtggtacacatacaccatggaacactatgaagccataaaatgtaatgagatgatgtcgtttgcagggacatggttggaatttgaagccattactcccagcaaactaatgcaggaacagaaaaccaaacaccacctattattattctaacttattagcagaagcagatcaatgagaacacatggacacatcaggaagaacaacacacactggacacctgtttcatggcatgagggaggggaaggagagcaacaggaagaatagctgtggatgctgggcttagtacctgggtgatgaaatgatctgtgcagtaaagcacaatggcacacgtttatctatgtaagagacctgcttatcctgcacatggacccctaaacttaaaataaaagttgaaaaaaaaGCTTATCACATATGGACCACTGAACTTAAAATAAAACTTGAAAAAACACTGAGTATGAGGT a score=91.0 s hg17.chr7_random 242215 1 + 778964 T s fr1.chrUn 101408897 1 - 349519338 T a score=4397.0 s hg17.chr7_random 242216 20 + 778964 GGATTCCCTA-GGTT---------AGACCC s panTro1.chrUn_random 63435725 21 + 240967748 GGATTCCCTATGATT---------AGACCC s canFam1.chr10 67753189 20 - 72717409 GGATTCTCCA-TGTT---------GGACCC s fr1.chrUn 101408898 29 - 349519338 GGATTCTCCA-TGTTGTTGGTGCGGGACTG a score=106622.0 s hg17.chr7_random 242236 307 + 778964 AAACTGAGGATCCTGA-AGCTCCTGCTGG----GGGATTTGGGGCTGGGGGCACCCTGGGGAGCTGCTGCCAAGGCCATCCACCGTCCATACAGGCCGC------CTCCCTTCCCGGCCTG------TGATGGAAAGGAGAAGGGGTATGTGAACAGCTGTGGAAGTCAG---ACTCTCG-----------------------------------------------------GGAACTGAAT-----CAGGCCCCAGC----------------CCATGCCCCCCAGCCCAGTCCAGCC--AACGTGCCCGC-TGTCTTCCCACCCAGCCAG-------------CCGAGCCCTCAGGATTGTTAGATGGAACCAGGCTCCATCACCACCCAGGCATGGAGGGAAGATGCCCTGGT s panTro1.chrUn_random 63435746 307 + 240967748 AAACTGAGGATCCTGA-AGCTCCTACTGG----GGAATT-GGGGCTGGGTGCACCCTGGGGAGCTGCTGCCAAGGCCGTCCACTGTCCCTACAGGCCGC------CTCCCTTCCCGGCCTG------TGATGGAAAGGAGAAGGGGTATGTGAACAGCTGTGGAAGTCAG---ACTCTCG-----------------------------------------------------GGAACTGAAT-----CAGGCCCCAGC----------------CCATGCCCCCCAGCCCAATACAGCC-CAACGTGCCCGC-TGTCTTCCCACCCAGCCAG-------------CCAAGCCCTCAGGACTGTTAGATGGAAGCAGGCTCCATCATCACCCAGGCATGAAAGGAAGATGCCCTGGT s mm5.chr10 130517342 302 + 130633972 AAACTGAGGAGCCCGG-AGCTGCCACCGG----GGGATC-GGGGCTGGGGGCA-CCGGGGAAGCCGCCGCCTGGCCCGCCCGCCCTCTGTGCAGGCCGC------CTCCCTTCCCGGCCCG------GGGAGGAAACGCGAGGGGG-ATGTGAACAGCTGCGGGAGTCGG---AGTCTCG-----------------------------------------------------GGAGCCGGAGCCCGACGGGCCCCCGC----------------CCAGGCCCCCCAGCCC-----------AGCCCGCCCGCGCGTCTTCCCGCCCAGCCAG------------CCCGGGCCCGCGGGATTGTTAGATGGAACACGGCTCCATCATCACCCAGGCGCGGAGGGAAGACGCCCTGGT s canFam1.chr10 67753209 359 - 72717409 AAACTGAGGAGCCCGG-AGCTGCTGCCGG----GGGATc-ggggccgggggcacccgggggagccgctgcccgggccgcccgcccTCCGTACAGGCCGC------CTCCCTTCCCGGCCCG------GGGAGGACGCGAGGGCGGGGATGTGAGCAGCTGTGGGAGCGCG---AGCGTCGGagccgcagccggagccgcagccgcagccgcagccgcagccgcagccgcagccggagccggag-----cgggcccccgc----------------ccagg-cccccagcccagccccGCC--Tgcgcgcccgc-cggccccgcgcgcagccag------------cccgggcccgcggggTTGTTAGATGGAACACGGCTCCATCATCACCCAGGCGCGGAGGGAAGACGCCCTGGT s fr1.chrUn 101408927 349 - 349519338 AAGACGACGAGCAGGACGGCCGATCCTGGCACCAGGAAC-GGAGCCCAACCCGACC-------CCGCCGCGCCGAGCAT-CGCCGTCCGGAGAAGACGCGCCTCGCCCACTCTTCAGCCGGAGCTTCGGAAGGGAAAGAGAAAGGAAGCAGGACCGA--GCCGAAGCCCGCTCACCCCGA-----------------------------------------------------GGACTCGGACCGAGGCGGATGACAGCTTTCCTCTCTGGATTATCAAGCCCACTCGTCCGCGCAAGCCAATGAGGGACGGT-CGACAGTGCTCCGGGACAGGATCTGAGGATTTCCAGGGCTCCGTGATTGTCAAATGGAA---AGTTCTATTATCACCCAGGTCCAGAAAGAAGACGTCTCGGT a score=4231.0 s hg17.chr7_random 242543 12 + 778964 CCTTAGCAAGCA s panTro1.chrUn_random 63436053 12 + 240967748 CCTTAGCAAGCA s mm5.chr10 130517644 12 + 130633972 GCTCACCAAGCA s canFam1.chr10 67753568 12 - 72717409 GCTCGCCAAGCA a score=54840.0 s hg17.chr7_random 242555 152 + 778964 AGGCCTGGTTTCCAAAGTGCTCTCCGAAGAGGCCTCATGTTTGTGACATCTTAGAAGGTACCTTTCTGCTGTTCTTGCACCCAGCATGTTGGCAAGTCAAGTTCCCCCACTGAGTTCTCCACACATAAGGAGGGAGTCAACACCATTGCTAA s panTro1.chrUn_random 63436065 152 + 240967748 AGGCCTGGTTTCCAAAGTGCTCTCCGAAGAGGCCTCATATTTGTCACATCTTAGAAGGTACCTTTCTGCTGCTCTTGCACCCAGCATGTTGGCAAGTCAAGTTCCCCCACTGACTTCTCCACACATAAGGAGGGAGTCAACACCATTGCTAA s mm5.chr10 130517656 147 + 130633972 AGGCCTAGTCTCC-AAGTCCTCGCCTAAGAAGCCCCGTGGCCGCAGCATCTTC-AAGGCCCTCTTGTGCTGTTTCCACACACAGCATGTTGTCCAGTCCAGCTCTTCCACTGAGCT---CACACACAAGGAGGAGGCCAACACCATCGCCAA s canFam1.chr10 67766847 150 - 72717409 AGGCCTGGTCTCC-AAGTCCTCTCCTAAGAAACCTCGTGGACGGAACATCTTC-AAGGCCTTTTTCTGCTGTTTTCGTGCCCAGCATGTTGGCCAGTCAAGCTCTTCCACTGAGCTCTCCGCATACAAGGAGGAAGCCAACACCATTGCTAA a score=12740.0 s hg17.chr7_random 242707 30 + 778964 GTCGGATCAGCTCAAGGGTCTCCAGTATCA s panTro1.chrUn_random 63436217 30 + 240967748 GTCGGATCAGCTCCAGGGTCTCCAGTATCA s mm5.chr10 130517803 30 + 130633972 GTCCGATCTGCTCCAGTGTCTCCAGTACCA s canFam1.chr10 67768696 30 - 72717409 GTCGGATCTGCTCCACTGCCTCCAGTACCA a score=4086.0 s hg17.chr7_random 242737 6 + 778964 GTTTTA s panTro1.chrUn_random 63436247 6 + 240967748 GTTTTA s mm5.chr10 130517833 6 + 130633972 GTTTTA s canFam1.chr10 67768726 6 - 72717409 GTTTTA s fr1.chrUn 101410822 6 - 349519338 GTCCTG a score=54.0 s hg17.chr7_random 242743 1 + 778964 T s panTro1.chrUn_random 63436253 1 + 240967748 T s mm5.chr10 130517839 1 + 130633972 T s canFam1.chr10 67769146 1 - 72717409 T s fr1.chrUn 101410828 1 - 349519338 A a score=10877.0 s hg17.chr7_random 242744 17 + 778964 CAGATCCCAGGGACCTG s panTro1.chrUn_random 63436254 17 + 240967748 CAGATCCCAGGGACCTG s mm5.chr10 130517840 17 + 130633972 CAGATCCCTGGGACCTG s canFam1.chr10 67769147 17 - 72717409 CAGATCCCGGGGACCTG s fr1.chrUn 101410829 17 - 349519338 CAGCAGCATGAAATCTG s danRer1.chr9 374799 17 + 28422069 CAGATACCAGGCGAGAG a score=101677.0 s hg17.chr7_random 242761 82 + 778964 CCTGCTCCCAGAGGTGACAGAGAAAAATCAAGGAACGATCTGTATGGTCACTGACATGGATGAAACCCTTGTGCATAGCTCC s panTro1.chrUn_random 63436271 82 + 240967748 CCTGCTCCCAGAGGTGACAGAGAAAAATCAAGGAACGATCTGTATGGTCACTGACATGGATGAAACCCTTGTGCATAGCTCC s mm5.chr10 130517857 82 + 130633972 CCTGCTCCCCGAGGTGACAGAGCAAGATCAAGGCAGGATCTGCGTGGTCATTGACCTGGATGAGACCCTTGTGCACAGTTCC s rn3.chr11 8427063 82 - 87800381 CCTGCTTCCCGAGGTCAAGGCCCAGGACTCAGACAAGATCTGCGTTGTCATCGACCTGGACAAGACCCTGGTGCACAGCTCC s canFam1.chr10 67769164 82 - 72717409 CCTGCTCCCAGAGGTGACAGAGGAAGATCAAGGAAGGATCTGCGTGGTCATTGACTTGGATGAAACCCTTGTGCATAGCTCC s fr1.chrUn 101410846 82 - 349519338 CCTCCTGCCTGCCGTGGAAGACCAGGACCAGGGAAAGATCTGCGTGGTCATAGACCTGGATGAGACGCTGGTGCACAGTTCC s danRer1.chr9 374816 82 + 28422069 TCTGCTGCCAGCAGTGACCTCTCACGACCAGGGGAAGATCTGTGTGGTCATAGATCTGGATGAAACACTGGTGCACAGCTCC a score=1167.0 s hg17.chr7_random 242843 4 + 778964 ATTA s panTro1.chrUn_random 63436353 4 + 240967748 ATTA s mm5.chr10 130517939 4 + 130633972 TTTA s rn3.chr11 8427145 4 - 87800381 TTCA s canFam1.chr10 67769246 4 - 72717409 TTTA s fr1.chrUn 101411882 3 - 349519338 TTC- s danRer1.chr9 374898 4 + 28422069 TTTA a score=4011.0 s hg17.chr7_random 242847 2 + 778964 AG s panTro1.chrUn_random 63436357 2 + 240967748 AG s mm5.chr10 130517943 2 + 130633972 AG s rn3.chr11 8427149 2 - 87800381 AG s canFam1.chr10 67769740 2 - 72717409 AG s fr1.chrUn 101411885 2 - 349519338 AG s danRer1.chr9 374902 2 + 28422069 AG a score=64035.0 s hg17.chr7_random 242849 49 + 778964 CCAATCAGCAATGCTGACTGCCTAGTGACTGTAAAGATTGAGGGGACCA s panTro1.chrUn_random 63436359 49 + 240967748 CCAATCAGCAATGCTGACTGCCTAGTGACTGTAAAGATTGAGGGGACCA s mm5.chr10 130517945 49 + 130633972 CCGATCAACAATGCTGACTTCATAGTGCCTGTAGAGATTGAGGGGACCA s rn3.chr11 8427151 49 - 87800381 CCAGTAAACAACGCTGACTTCATCATCCCAGTGGAGATTGATGGAGTGG s canFam1.chr10 67769742 49 - 72717409 CCAATCAACAATGCCGACTTCGTAGTGCCTGTAGAGATTGAGGGGACCA s fr1.chrUn 101411887 49 - 349519338 CCCATCAGCAACGCCGACTTTATTGTGCCTGTGGAAATTGAGGGGACTA s danRer1.chr9 375083 49 + 28422069 CCAATAAGCAATGCAGATTTCATTGTGCCTGTGGAGATTGAGGGGACCA a score=-31.0 s hg17.chr7_random 242898 1 + 778964 T s fr1.chrUn 101411936 1 - 349519338 C a score=-2725.0 s hg17.chr7_random 242898 1 + 778964 T--------------------- s panTro1.chrUn_random 63436408 1 + 240967748 T--------------------- s mm5.chr10 130517994 22 + 130633972 CGCACCAGGTGTATGTGCTCAA s rn3.chr11 8427200 22 - 87800381 TTCACCAGGTCTATGTACTGAA a score=80559.0 s hg17.chr7_random 242899 65 + 778964 GAGGCCTTATAT-GGATGAGTTCCTGAGATGACTGGAGGAACTGTTTAAATGTGTTTTCTTCATTG s panTro1.chrUn_random 63436409 65 + 240967748 GAAGCCTTATAT-GGATGAGTTCCTGAGATGACTGGAGGAACTGTTTAAATGTGTTTTCTTCTTTG s mm5.chr10 130518016 66 + 130633972 GAGGCCTTACGTCGGATGAGTTCCTGAGACGGATGGGGGAGCTCTTCGAATGTGTTCTCTTCACTG s rn3.chr11 8427222 65 - 87800381 ACGGCCCCACGT-AGATGAGTTCCTACAGCGAATGGGCGAGCTCTTTGAGTATGTGTTGTTCACTG s canFam1.chr10 67772033 65 - 72717409 GAGGCCTTATGT-GGATGAGTTCCTGCGACGGATGGGGGAACTCTTTGAATGTGTGCTCTTCACTG s fr1.chrUn 101412272 65 - 349519338 GAGGCCACACGT-GGACGAGTTCCTGCAGAGGATGGGAGAGCTGTTTGAATGTGTACTGTTCACAG s danRer1.chr9 379384 65 + 28422069 GAGGCCGTACGT-GGATGAGTTTCTCCAGCGGATGGGGGAACTGTTTGAATGTGTTCTGTTCACTG a score=-4942.0 s hg17.chr7_random 242964 36 + 778964 --------------------------------------------------------CTCTCTTC-------------------------------------ATTCCAGACTGAACAAGTATGCAGATCC s panTro1.chrUn_random 63436474 36 + 240967748 --------------------------------------------------------CTCTCTTC-------------------------------------ATTCCAGCCTGAACAAGTATGCAGATCC s mm5.chr10 130518082 25 + 130633972 --------------------------------------------------------------------------------------------------------CCAGCTTGGCCAAGTATGCTGACCC s rn3.chr11 8427287 25 - 87800381 --------------------------------------------------------------------------------------------------------CCCGTCTTGCCAAGTACGCAAACCC s canFam1.chr10 67772513 23 - 72717409 --------------------------------------------------------CTCTCTTC----------------------------------------CC----------AGTACGCCGACCC s danRer1.chr9 379449 129 + 28422069 CTAGCCTTGCTAAGGTATGGAAACATAACATTCCTGTAGAAAATAAGAGTAGAAAGCCCTCATTAGATGCTTGTTGGCTAGCATTCTAGAGTTGTGTAGTAACCCACGGCTGTGCTAGTATGCAGACCC a score=100.0 s hg17.chr7_random 242964 1 + 778964 C s fr1.chrUn 101412337 1 - 349519338 C a score=2000.0 s hg17.chr7_random 243000 3 + 778964 TGT s panTro1.chrUn_random 63436510 3 + 240967748 TGT s rn3.chr11 8427312 3 - 87800381 TGT s canFam1.chr10 67772536 3 - 72717409 GGT s danRer1.chr9 379578 3 + 28422069 TGT a score=119716.0 s hg17.chr7_random 243003 1320 + 778964 tgagaggtgacagcgtgctggcagtcctcacaacccttgctcactctccgggcctcctctgcctgggctccaactttggcggcactttaggagcccttcagcctgtcgctgcactgtgggagcccctttctgggctggccaaggtcggagccggctccctcagcttgcgacgaggtgtggagggagaggtgcgtgtgggaaccagggcggcgtgcagtgcttgaaggccagcgcgagctcggcggaccccacactcggagccgccggctggccccaccggccccaggcagtgaggggcttaacacctcggccagcagctgctgtgctcaatttctcgctgggccttagctgccatcccacagggcagggcttgggtcctgcagcccgccatgcctgagcctcccccccatcggtgggctcctgtgtgcccaagcctcctggatgagtgccgccccctgctccacagcacccagtcccatcaaccacccaagggctgagaagtgcgggtgcacagtgccagactggcaggcagctacacctgcagaccctgtgggggatccactgggtgaagccagctgggctcctgagtctggtagggacgtggagaaactttgtgtctagctcagggattgtaaatacaccaatcggcactctgtatctagctcaaggtttgtaaacatgccaaccagcaccctgtgtctagctcagggtttgtgaatgcaccaatcaacactctgtatctagctacactgggggggatgtggagaacctttgtgtctagctcagggattgtaaacacaccaatcagcgccctgtgaaaaaagaccactcggctctaacaatcagcaagatgtgggtggggccagataagggaataaaagtaggctgccccagccagcagtggcaacccactcgggtccccttccacactgtggaagctttgttcttttgctct-ttgcaataaatattgctgctgctcactctttgggtcc-acaatgcctttatgagctgtaacactcactgtgaaggtccacaacttcactcctgaagccagcgagaccacgaacccacctggaggaatgaacaactccagatgtgccaccttaagagctgtaacactcaccgcgaacgtctgcagcttcactcctgagccagcgagaccacgagcccaccagagggaagaaact--ctcaacacatccgaatgtcagaaggaacaaactccagacatgccacctttaagaactgtaacactcaccgtgagggtctgtggcttcattcttgaagtcagtgagaacaagaacccaccaattccagacacaT s panTro1.chrUn_random 63436513 1324 + 240967748 tgagaggtgacagcgtgctggcagtcctcacaacccttgctcgctctcagggcctcctctgcctgggctcccactttggcagcactttaggagcccttcagcctgtcgctgcactgtgggagcccctttctgggctggccaaggtcggagccggctccctcagcttgcgacgaggtgtggagggagaggtgcgtgtgggaaccagggcggcatgcagtgcttgcaggccagcccgagcccggcagaccccgcactcggagccgccggctggccccaccggccccaggcagtgaggggcttaacacctcggccagcagctgctgtgctcaatttctcgctgggccttagctgccttcccacagggcagggcttgggtcctgcagcctgccatgcctgagcctccccaccatccgtgggctcctgtgtgcccaagcctcctggatgagtgccaccccctgctccacggcaaccagtcccatcaaccacccaagggctgagaagtgcgggtgcacagcgccagactggcaggcagctacacctgcagaccctgtgggggatccactgggtgaagccagctgggctcctgagtctggtgaggacatggagaaactttgtgtctagctcagggattgtaaatacaccaatcggcactctgtatctagctcaaggtttgtaaacacaccaacaagcaccctgtgtctagctcagggtttgtgaatgcaccaatcaacactctgtatctagctacactggtggggatgtggagaacctttgtgtctagctcagggattgtaaacacaccaatcagcgccctgtgaaaaaagaccactcggctctaacaatcagcaagatgtgcgtggggccagataagagaataaaagtaggctgccccagccagcagtggcgacccactcgggtccccttccacactgtggaagctttgttcttttgctctcttgcaataaatcttgctgctgctcactctttgggtcccacaatgcctttatgagctgtaacactcactgtgaaggtccacaacttcactcctgaagccagagagaacacgaacccacctggaggaatgaacaactccagatgcgccaccttaagagctgtaacactcaccgcgaacgtctgcagcttcactcctgagccagtgagaccacgagcccaccagaaggaagaaactgactcaacacatccgaatgtcagaacgaacaaactccagacatgccacctttaagaactgtaacactcaccgtgagggtctgtgacttcattcttgaagtcagtgagaacaagaacccaccaattccagacacaT a score=846.0 s hg17.chr7_random 244323 3 + 778964 TGT s panTro1.chrUn_random 63437837 3 + 240967748 TGT s mm5.chr10 130518107 3 + 130633972 TGT a score=193120.0 s hg17.chr7_random 244326 172 + 778964 GATGGGTGTGCTGGACCAGTGTGAGGTGTTCTGGGGTTGCCTAGCCCATGAGTCACGTTTGTTCCACCAGGGCTGCTATGTCAATGACCTCAGCCATCTGGGGAGGGACCTGAGGAAAACTCTCATCCTGGACAACTCGCCTGCTTCTTA-CGTCTTCCACACAGAGAATGCA s panTro1.chrUn_random 63437840 173 + 240967748 GATGGGTGTGATGGACCAGTGTGAGGTGTTCTGGAGTTGCCTAGCCCATGAGTCACGTTTGTTCCACCAAGGCTGCTATGTCAATGACCTCAGCCATCTGGGGAGGGACCTGAGGAAAACTCTCATCCTGGACAACTCGCCTGCTTCTTAACGTCTTCCACACAGAGAATGCA s mm5.chr10 130518110 172 + 130633972 GACTGATCTCCTGGACCGGTGCGGGGTGTTCCGGGCCCGCCTGTTCCGAGAGGCTTGTGTGTTCCACCAGGGCTGCTATGTCAAGGACCTCAGCCGCCTGGGAAGGGACCTGAGGAAAACTGTCATCCTGGACAACTCCCCTGCATCTTA-CATCTTCCACCCAGAAAATGCA s rn3.chr11 8427315 172 - 87800381 AGCTGATCTGCTGGACAAGTGGGGAGCCTTCTGTACCAGGCTGTTTTGAGAGTCCTGTGTCTTCCATCAGGGAAACTACGTAAAAGACCTGAGCAGGCTGGGCCGAGACCTGCGGCGGGTGCTAATCTTAGACAACTCACCCGCCTCATA-CGTCTTTCATCCAGACAATGCC s canFam1.chr10 67772539 172 - 72717409 GACCGACCTGCTGGACAGGTGTGGGGTGTTCCGGGCCCGCCTGTTCCGGGAGTCCTGCGTGTTCCACCAGGGCTGCTACGTCAAGGACCTCAGCCGCCTGGGAAGGGACCTGAGGAAAACCCTCATTCTGGACAACTCGCCCGCCTCCTA-CATCTTCCACCCGGAGAATGCA s fr1.chrUn 101412995 172 - 349519338 GACGGACCTCCTGGACCAGTGCGGTGTGTTTCGGACTAGATTGTTCCGAGAGTCCTGCGTTTTTCACCAGGGTTGCTACGTGAAGGACTTAAGTCGTTTGGGCAGAGACCTTCACAAGACCTTGATCCTGGACAACTCTCCTGCCTCCTA-CATCTTCCACCCCAACAATGCT s danRer1.chr9 379581 172 + 28422069 GACAGACCTGCTGGATCAGTGCGGTGTGTTTCGGACGCGTCTCTTCCGTGAATCTTGTGTCTTCTATCAAGGCTGTTATGTGAAAGACCTGAGTCGCCTTGGCCGTGAGCTCCACAAAACCCTGATCCTGGACAACTCTCCTGCCTCCTA-CATCTTCCACCCTGAGAACGCT a score=1527.0 s hg17.chr7_random 244498 3 + 778964 GTG----- s panTro1.chrUn_random 63438013 3 + 240967748 GTG----- s mm5.chr10 130518282 3 + 130633972 GTG----- s rn3.chr11 8427487 3 - 87800381 GTT----- s canFam1.chr10 67773189 3 - 72717409 GTG----- s fr1.chrUn 101413167 3 - 349519338 GTG----- s danRer1.chr9 379753 8 + 28422069 GTGGGTCG a score=20447.0 s hg17.chr7_random 244501 18 + 778964 CCTGTGCAGTCCTGGTTT s panTro1.chrUn_random 63438016 18 + 240967748 CCTGTGCAGTCCTGGTTT s mm5.chr10 130518285 18 + 130633972 CCTGTGCAGTCCTGGTTT s rn3.chr11 8427490 18 - 87800381 CCAGTGGCCTCGTGGTTT s canFam1.chr10 67773192 18 - 72717409 CCCGTGCAGTCGTGGTTC s fr1.chrUn 226899864 18 - 349519338 CCGGTGCAGTCCTGGTTT s danRer1.chr9 379761 18 + 28422069 CCCTCGCTCTCCTGCTCT a score=7957.0 s hg17.chr7_random 244519 18 + 778964 GATAACATTCCAGACA-GC- s panTro1.chrUn_random 63438034 18 + 240967748 GATAACATTCCAGACA-GC- s mm5.chr10 130518303 19 + 130633972 GATGACATGGCAGATACAG- s rn3.chr11 8427508 18 - 87800381 GATAACATGAGTGACA-CT- s canFam1.chr10 67773210 18 - 72717409 GATGACATGGCAGACA-CG- s fr1.chrUn 226899882 19 - 349519338 GACGACATGACGGACA-CGG a score=65223.0 s hg17.chr7_random 244537 57 + 778964 AGCTGCTGCACCTGATATCAGTCTTTGAGGACATGAGTGGAGCAGAGGGCATCTATA s panTro1.chrUn_random 63438052 57 + 240967748 AGCTGCTGCACCTGATATCAATCTTTGAGGAGATGAGTGGAGCAGAGGGTGTCTACA s mm5.chr10 130518322 57 + 130633972 AGTTGCTGAACCTGATTCCAGTCTTCGAGGAGCTAAGTGGAACTGATGATGTCTACA s rn3.chrX 134363114 57 - 160775580 AGTTGCTGAACCTGATTCCAGTGTTCGAGGAGCTGAGTGGAGCGGATGATGTCTACA s canFam1.chr10 67773229 57 - 72717409 AGCTGCTGAACCTGATCCCCATCTTTGAGGAGTTGAGCGGAGCAGAGGATGTCTACA s fr1.chrUn 226899901 57 - 349519338 AGCTGCTGGATCTGATCCCCCTGCTGGAGGGCCTCAGCAAGGAGGAGGACGTTTACA s danRer1.chr9 381760 57 + 28422069 AGCTGCTTCACCTCATCCCAGTATTTGAAGAGTTAAGCCAAGCTGAAGACGTCTACA a score=34241.0 s hg17.chr7_random 244594 57 + 778964 CTAGCCTTGGGCAGCAGTGGGCCC-------------TTAGCCTTT-CCTGCTTCCCAGCAATGGCCATCA s panTro1.chrUn_random 63438109 57 + 240967748 CTAGCCTTGGGCAGCAGTGGGCCC-------------TTAGCCTTT-CCTGCTTCCCAGCAATGGCCATCA s mm5.chr10 130518379 56 + 130633972 CCAGCCTTGGGCAGCTGCGGGCCC-------------CTTAGCCTT-CCTGC-TCCAAGAAACGGCCATCC s rn3.chrX 134363171 56 - 160775580 CCAGCCTTGGGCAGCTGCGGGCCC-------------CTTAGCCTT-CCTGC-TCCAAGAAATGGCCACCC s canFam1.chr10 67773286 57 - 72717409 CCAGCCTGGGGCAGCTGCGGGCCC-------------CTTAGCCTTCCCCGC-TCCAAGCGATGGCCATCC s danRer1.chr9 381817 70 + 28422069 GCAGACTCCAACAACTCAGGGCTCCATAATCCATACGCTAAACCTC-CATGTTGAGTAGCACTGACTGCCA a score=234954.0 s hg17.chr7_random 244651 739 + 778964 CAGTAGGGGATTTTCCCACACTGTGCCTTTATGATCAGCCTGAAAGAATGAAGCCTGGAACACCTACCCACATGGGCCTGGAAACAGTGAGAA-GTGATTGAAAAGAGCTTTAGGACAGCTTAGATTCCCAGTGGGTGAATGCCAGACCAAGGATACCCAGAGCTA-CCTGCCATCAAGTTTTTGGGTTCCCAAG-----ATGTGGGTGTGAGAGAAAGAAAGA--------GAGCATGTGTGTTTTGTGATGAACTGTGGGCCC--AATATATAGTGTTTCA-GTA-GGGGAGAAGCTGAAGGACAGAGACTCTTCCCAAGTTAGCTTTGTCTCCTCTCCTGTCACCCTATGAGACCCTGAGTTCCATAGGGATGAAGACTGTTGAAGGCTCCATTG-CAAA-CCT-GGTCTTTCTTCAGTGCTGCAAGGCCTATGCCAAGGAGAAAGGAAAAGT---ATGC---CTTTGGGTGTTCCAGACACATATCTTTCTGAA---ATATTTCTCCAGCCAGTTGTTGCAGACAAAAGACGATATTTCTGGGAAGATGGGGACTTATGTCCAGACC----AGTACCCA-AACCATCAGGTCTTGTGGCCTAAAGGCTATGCTTACTTAAGTCCAGCCA-AGTGCCTGGGATGGATCCTT-TCTGCATCT---CCTCAAGA----------------------CTCACCACTTAGGCATAGCCTCAAACCTGTGGGGAAGGAAGTTGTCTCCCCACCCTGCAAGAGGACAAATAACTGATTTCTCTTCTTTCGACTCTGTTTTAAAAT s panTro1.chrUn_random 63438166 738 + 240967748 CAGTAGGGGATTTTCCCGCACTGTGCCTTTATGATCAGCCTGAAAGAATGAAGCCTGGAACACCTACCCACATGGGCCTGGAAACAGTGAGAA-GTGATTGAAAAGAGCTTTAGGACAGCTTAGGTGCCCAGTGGGTGAATGCCAGACCAAGGATACCCAGAGCTA-CCTGCCATCAAGTTTTTGGGTTCCCGAG-----ATGTGGGTGTGAGAGAAAGAAAGA--------GAGCATGTTTGTTTTGCTATGAACTGTGGGCCA--AATATATAGTGTTTCA-GTA-GGGGAGAAGCTGAAGGACAGA--CTCTTCCCAAGTTAGCTTTGTCTCCTCTCCTGTCACCCTATGAGACCCTGAGTTCCATAGGGATTAAGACTGTTGAAGGCTCCATTG-CAAA-CCTAGGTCTTTCTTCAGTGCTGCAAGGCCTATGCCAAGGAGAAAGGAAAAGT---ATGC---CTTTGGGTGTTCCAGACACACATCTTTCTGAA---ATATTTCTCCAGCCAGTTGTTGCAGATAAAAGACGATATTTCTGGGAAGATGGGGACTTACGTCCAGACC----AGTACCCA-AGATATCAGGTCTTGTGGCCCAAAGGCTATGCTTACTTAAGTCCAGCCA-ACTGCCTGGGATGGATCCTT-TCTGCATCT---CCCCAAGA----------------------CTCACCACTTAGGCATAGCCTTAAACCTGTGGGGAAGGAAGTTGTCTCCCTGCCCTGCAAGAGGACAAATAACTGATTTCTGTTCTTTCGACTCTGTTTTAAAAT s mm5.chr10 130518435 691 + 130633972 CAACAGGGGACTCTGCTACACTGTGCCTTTGTGGTCAGCCT-----------------------CACTGACA-GGGTCTGCAAGTAGCCAGGGCGTGTGGGACAAAAG--------CAGGTCACACGCAGAGCAGG---AAATCAGACCAAG---ACCCAGAGCTC-TCTG-CACCCCGTGCTCAGTTCCC---------AGGTGGTTGTGTGGGTGTGTGTGC--------GTGCATGTGC-CCGTCCGGTAAACTATGGTCCT-GGGTGCCCAGTTGTGCA-GTAGGGGGAGAAGCTGAAAGATAAGGACTCAACCCAAGTCA--TTTGTCTTCTTTCCTGCTATGCTGTGAGCTACTGAGCTTTACAGCCATGAAAACTATTGTAGGCTCCCTCGCCAAA-CCATGGCTTTCCCTCAGCAT--CAAGACCTGTGCCAAGGAGAAGGGAGAGGCCGGAGGCTG-CTTTGGATG-CCCAGACACACATCTTTCAGAAAACACAGAAACCTAGCCAGCAGCTGCAGAC----------ATGTTTGGGAATATGAGAGCATGTTCGCAGACC----------------CACCAGGTTCTGTGTCCTATGGGCTA----CACCTGGCTCCAGCAAGAATGCCTGCCATGGGCACTTCTCTGTACCCGGGCTCCAGTG--------CCAGGCCAGCCT--CTCACTCCCAAGCCATAGTCCTACTCCCATGGGAAAGGAGGTCTTCTCTCTGCCCTGGAGGAGGACATATAGCTGATTTCTGTTCTTTTAACTC----TTAAAAA s rn3.chrX 134363227 681 - 160775580 CAACAGGGGA-TTTGCTACACTGTGCCTTTGTGATCAACCT-----------------------GACTGTCA-GGGTCTGCAAGTACCCAGGGCATGCTAGACAAGAGCTGTATGGCAGGTCACATGCAGAGCAGG---AAATCAGACTGAG---ACCCAGAGCTC-TCTG-AACCCTGT-----GTCTCCCAAGTGTGCGTGTGGGTGTGTGTTTGTGTGTGCGCATGCATGTGCATGTGC-CCGTCCAGTAAACTATGGTCCA-CGGTGCCCAGTGGC-CA-GTAGGGGGCGAAACTGAAAGATCAAGACTTGACCCAAGTCT--CTTGTCTCTTTTCCTGCTGCCCTGGGAGCTGCTAAGTGTCACAGCCA-GGCAACTGTTGTAGACTCCCCTGCCAAA-CCATGGCCTTTCCTCAACATCACCAGGCCTGTGCCAAGGAGAAGGGAGAGGCCAGAGGCTGCTTTCAGATG-CCCAGCCACACACCT---AGAA---A------TCTAGCCAGCAGCTGCAGAC------------GTTTGGGAAGATGAGGACATGTTCACAGACC----------------CACCAGGTCCTGTGTCCTATGGACTG----CACCTGACTCCAGCAGAATTGCTT--------CTCTG-TCTCCAGG----CTCCAGTA--------CCAGGCCAGCCT-CCTCACTCCCAAGCCATAGTCTTACTCCCATGGGAAAGGAGGTCTTCTCTCTGTCCTAGGAGAGGAC----AGCTGATTTCTGTTCTTTTAACTC----TTAAAGT s canFam1.chr10 67773343 745 - 72717409 CAGGAGGGGACCTTCCTACACTGTGCCTTTATGACCAGCCTGACGGAGCAGAAGCTGAGCCTCTCACCCAACGGGGCCTGGGGGT----AGAA-GTGGCCGCACAGGGCTTTAGGACGGGATAGATGCGAGGTGGGCACGTGTCAGACCCAG---ACCCACAGCTTGTCTG--ATCCTGA-GTTGGGTTCCCAA------AtgtgagtgtgtgtgtgtccgtgtgactgtgtgtgtctgtgtgtCTCACCCTGAGTGGTGGCCCCACGATAGA-AGTGTCTCAGGTGGAGAGAGAAACTGAAAGATGGAGACTC--CCCAAATTAG-CGTGTCTCCTCTCCAGTCACCCTGAGAGCCCCTGAGCTCGATCCAGA-GAGGACTGTTGAAGGCTCTGATGCCAAAGCCATGGCCTTTCCTCGGTGTCGGAAGGCTCATGCCAAGGAGAAAGGGTGAATCAGAGGCTGCCTTCCGGTGTCCCACGCACACGCCTTTCTGAA---ACCTTTCTCCAGCCAGCTACCGCAGACAGAAGACAACACGTCTGGAAAGATGAAAGCTTGTTTCCAGAACCAGTGGCGCCTGCAGCCATCAGGTC---------------------CACCTGCCTCCAGCCG-AGTGCCTGGCATGGGCCCTC-TCTGTCT-----CCCCGAGGTGTGGGCGCCGGGCCTGCCTTCCTCATCACCTAGCCATAGCCTCGAACCTGTGGGGAAGGAGGTCTTCTCCCCGCCCTGGAGGAGGACAAGTAACT--TTTCCGTTCTTTAGACTC--TTTTAAAAT a score=4295.0 s hg17.chr7_random 245390 6 + 778964 --TCTCTT s panTro1.chrUn_random 63438904 6 + 240967748 --TCTCTT s mm5.chr10 130519126 6 + 130633972 --TCTCTT s rn3.chrX 134363908 6 - 160775580 --TCTCTT s canFam1.chr10 67774088 6 - 72717409 --TCTCTT s danRer1.chrUn 144504437 6 + 367113659 TATTTC-- a score=761.0 s hg17.chr7_random 245396 3 + 778964 AAA s panTro1.chrUn_random 63438910 3 + 240967748 AAA s rn3.chrX 134363915 3 - 160775580 ATA s danRer1.chrUn 144504443 3 + 367113659 AGA a score=7947.0 s hg17.chr7_random 245399 60 + 778964 AAAAAAAAAAAAGCC--TATCTGAAACTGAAAAGAAAAAAACAAAAAAACAAGGAAAAAGAT- s panTro1.chrUn_random 63438913 59 + 240967748 AAAAAATAAAA-GCC--TATCTGAAACTGAAAAGAAAAAAACAAAAAAACAAGGAAAAAGAT- s rn3.chrX 134363918 61 - 160775580 AACATGGAGTG-GTTTGTATCCAAAAAAAAAAAAAAATAGCCAAGAAGAACATCAGGAGGAT- s fr1.chrUn 101415628 59 - 349519338 AAAGAACAAAT-GAT--TTTAAAAGATGAGAAAGTAAAGATCGAAAAACAAAAAAACAAGAT- s danRer1.chrUn 144504446 56 + 367113659 AGCAAACAATG------AGACTGCAACTGAAGAGAAAAAA-CAAAAAACAGATAAAGGATATT a score=-1005.0 s hg17.chr7_random 245459 2 + 778964 GT- s panTro1.chrUn_random 63438972 2 + 240967748 GT- s rn3.chrX 134363979 2 - 160775580 GA- s canFam1.chr12 34539511 2 - 75455811 GT- s fr1.chrUn 101415687 2 - 349519338 GT- s danRer1.chrUn 144504502 2 + 367113659 -TT a score=289.0 s hg17.chr7_random 245461 2 + 778964 CA s panTro1.chrUn_random 63438974 2 + 240967748 CA s rn3.chrX 134363981 2 - 160775580 CA s canFam1.chr12 34539513 2 - 75455811 AA s fr1.chrUn 307420359 1 + 349519338 -A s danRer1.chrUn 144504504 2 + 367113659 CT a score=-6127.0 s hg17.chr7_random 245463 238 + 778964 TACTTACATAAGTGAAAAACATACAG---ATATATCTATAAG------CAACAA--ACACAGCTA-ATTCACAC----------------ATATATTAAA---CATCACATTGAGA-TAAAGTGTACCGAGCTA-AAAATTATCTTTCAACTGATGATA--TCAAGCTTTAAAATAAAAATACATTTAACTGATCTGAGAAAACAT------AACTCCCAAGAAA-A--GAAACACAATAACACGGACTT----GAAAATAAGAAGAGAGATTTTCGTGCATAAAA s panTro1.chrUn_random 63438976 241 + 240967748 TACTTACATAAGTGAAAAACATACAG---ATATACCTATAAG------CAACAA--ACACAGCTA-ATTCACAC----------------ATATATTAAA---CAACACATTGAGACTAAACTGTACCGAGCTA-AAAATTATCTTTCGACTGATGATACCTCAAGCTTTAAAACAAAAATACAGTTAACTGATCTGAGAAAACAT------AACTCCCAAGAAA-A--GAAACACAATAACACGGAATT----GAAAACAAGAAGAGAGATTTTCGAGCATAAAA s canFam1.chr12 34539515 251 - 75455811 TATTTATAGAGGC-AAATACATACAT---A-ATAT-TATTGG------CAAAAA-CATACAGCTG-ATTCATACCTGAATAATCCCTGCAATATCTTAAAATGTAGTGAGTTAAAAAAAAAATGTAGTGAGTTG-AGAACTGCTACCCAAAACATAATACAT---------AGGTAAAAACTCAACTAACTAATATTGTGGA----------AAGTCCCATGAAA-AAGGAACCAAATTATAATGGCATTTCAAGAAAAAAGTAAGAGAAAACTTAACCCAAAAAA s fr1.chrUn 307420361 222 + 349519338 TACT-----AAGAGGGCAGTTTACAGCCTAAATGACTGCATC------AAAAAAGTAGAAAGCTT-------------------------ACATATTGAG---CACCTGACATCACACACTCTTCAAGGAACTAGAAAATTAAT----AATAAACAAAATTCCAAGTTAGAAGAAAAAAA------TAACAAAAATCAGAACA---------GAACCAAATGAAATA--GAGATGAAAAACAATAAAAAT----GATCAACAGAATAGAGTTGGTTTTCCAAAAAG s danRer1.chrUn 144504506 202 + 367113659 CAGTTTCATCAAAGCAGAATGTGTAA---TAATATCCATTAAACCCACCAACAA--AAACAGAGAAAGTTGTA-----------------TTTTGTTAAA---CA--------------------GAGTACCTA-AAAAGTATT----------TGTGACTTCAGCC---ACAATCAAAATA-----AACAAATATTGTTAAAAATAATTTAAACACCTTAGAAA-A--AAAAT----TAATACTTGATC----AATCCCAAGATTTACGATTT--------AAA- a score=1841.0 s hg17.chr7_random 245701 8 + 778964 TCCTGAAT s panTro1.chrUn_random 63439217 8 + 240967748 TCCTGAAT s canFam1.chr12 34539766 8 - 75455811 TTCTACAT s danRer1.chrUn 144504708 8 + 367113659 GTTTAAAT a score=157.0 s hg17.chr7_random 245701 8 + 778964 TCCTGAAT s danRer1.chrUn 144504708 8 + 367113659 GTTTAAAT a score=3048.0 s hg17.chr7_random 245709 31 + 778964 ACAACATAGAT---TTACAATGGAAAATAACCGt-- s panTro1.chrUn_random 63439225 31 + 240967748 ACAACATAGAT---TTACAATGGAAAATAACCGt-- s fr1.chrUn 307420583 34 + 349519338 ACAAAATGGGTAAATTGCTAGGTAGATTAACCAC-- s danRer1.chrUn 144504716 32 + 367113659 ATAATATAG-T---TTATATAGTAAAACACTTTCCT a score=26510.0 s hg17.chr7_random 245740 302 + 778964 ttttttttttat-tttttttttgagacagagtcttgccctgttgcccaggctggagtgcagtggcgcgatctcggctcactgcaaactctgtccactgagttcacgccattctcctgcctcagcctcctgagtagctggggatacaggcgcctgccactatgcccggttaattttttgtatatttagtagagacggggtttcaccatgttagtcagggttgtctcgatctcctgacctcgtgatccacccgccttggcctcccaaggtgctgggaatacaggcatgagccaccacaaccggcc s panTro1.chrUn_random 63439256 303 + 240967748 ttttttttttaaatttttttttgagacagggtcttgccctgacgcccaggctggagtgcagtggcgcaatctcggctcagtgaaaactctgcccactgagttcacgccattctcctgcctcagcctcctgagtagctgggaatacaggcgcctgccactatgcccggctaattttttgtatatttagtagagacggggtttcaccatgttagtcagggttctctcgatctcctgacctcgtgatccacccgccttggcctcccaaagtgctgggaatacaggcatgagccaccacaaccggcc a score=12131.0 s hg17.chr7_random 246042 105 + 778964 --GAAAAATAATTCTTTAG-ATATCTACAGCATTCAACTGT----GTGCACTCATGAAAAGCAGACAATTTAAGTCATTAGAATTTAATAAATTGCAGTAAAATTATACAGA s panTro1.chrUn_random 63439559 105 + 240967748 --AAAAAATAATTCTTTAG-ATATCTACAGCATTCAACTGT----GTGCACTCATGAAAAGCAGACAAATTAAGTCATTAGAATTTAATAAATTGCAGTAAAATTATACCGA s canFam1.chr12 34539786 104 - 75455811 --AAAAAAGAATCCTTC------TATATAATTTTGAACAGTGACAGTGCACCTATGAAAAGCAAGCATTTTAAATAATTGGAATGTCTTATATGGCAATAAAATTGTAAAGA s danRer1.chrUn 144504748 103 + 367113659 GAATAAAATAAAAATGTGGCATGTTTTAAAAACTAAATTAT----ATTGATTTTAGGGCAACA--CAATACTAATGCTTTAAATTCAGAAGA--GTTACAAAATCA-ATAGT a score=11667.0 s hg17.chr7_random 246147 55 + 778964 AAATACATTACAATCATTAATAACAGGCTCTAATGAGAGGAATTTAATAAATAAT s panTro1.chrUn_random 63439664 55 + 240967748 AAATACATTACAATCATTAATAACAGGCTCTAATGAGAAGAATTTAATAAATAAT s canFam1.chr12 34539890 49 - 75455811 ACATTCTTTACCATCAATCATAAAAAGCTCTTA------AAAATTTATGAATAAG s danRer1.chr23 22410259 55 + 22442303 GAATGAGGTGTCATCATTAATAAAAAGCAATTTAGTGGGCAATTTAATAAATAAT a score=16429.0 s hg17.chr7_random 246202 139 + 778964 CATTAAAAATACAGGATA----ATTTTATTATGTTCTCAATATGTTGCTGCACTTCTTACCACAAAACATAATAAAATTATATGACTATAATATAGATTTCAG----GAGCTAAAAAAGCCTTATATTTCCAAATAAAAGAACAACA s panTro1.chrUn_random 63439719 139 + 240967748 CATTAAAAAGACAGGATA----ATTTTATTATGTTCTCAATATGTTGCTGCACTTCTTACCACAAAATATAATAAAATTATATGCCTATAATATAGATTTCAG----GAGCTAAAAAAGCCTTATATTTCCAAATAAAAGAACAACA s canFam1.chr12 34539939 124 - 75455811 CACTTAAGAATTAGAGAAATATATGTTAATAAATTCTTCCTATTTTA-------------CACAGAATGTA----------AAGACTATAATCCATTCTTCAGAAGCAAGCCAGCAAAGTCCTTCACTTCTAAATAAAGAAACAACA a score=8087.0 s hg17.chr7_random 246341 52 + 778964 TAAATTTTGCAAAATATGACGAGCATTACTGCAGTATAAAGTAAATATCTGG s panTro1.chrUn_random 63439858 52 + 240967748 TAAATTTTGCAAAATATGACGAGCATTACTGCAGTATAAAGTAAATATCTGG s canFam1.chr12 34540063 51 - 75455811 TAGAAGTTGTAAACTATGCTGAGAATTATTGTA-TATAAAATAAATATTTGG s danRer1.chr23 22414374 47 + 22442303 TAGACCCCACAAAATCAAATGTGGGTT--TGCATTAATGGGTTTACATA--- a score=23218.0 s hg17.chr7_random 246393 196 + 778964 AATTAAAATATGCCATCA---------TTTAGATACAGACTAA-------AAAAAAGAATATAAATGTTAATGATTCCTTTCTGCCTGCAGTGAGCTTAAAATTACAACCAAAA-------------ATTTTAATAAATATGTAGCACCTACAAGACATT-TTATTAATAGCTTACATAATGTGGAA--ATTTGAGCAATTTATTTTAGAATTTTTGAATCTAAAAAT s panTro1.chrUn_random 63439910 196 + 240967748 AATTAAAATATACCATCA---------TTTAGATACAGACTAA-------AAAACAGAATATAAATGTTAATGATTCCTTTCTGCCTGCAGTGAGCTTAAAATTACAACCAAAA-------------ATTTTAATAAATATGTAGCACCTACAAGACATT-TTATTAATTGCTTACATAATGTGGAA--ATTTCAGCAATTTATTTTAGAATTTTTGAATCTAAAAAT s canFam1.chr12 34540335 213 - 75455811 aattaaaaaataaaataaatatttGGGATTAAATTCAGATAAATTATGAGGAAAGTAGATGAAAAACCTAATGATTACATT-TGCTTTAAGTAAAATTATATTTATGAACAAAA------------CATTTTAATAAATATGGGGATTTTACTAATTATC-TAATTGATT-CTTATAGAAGGTATCATCATTCAAGCATGTCATATCAGAACTTGTGAATCTAAAAAT s danRer1.chr23 22414421 189 + 22442303 AATTAAACTAT----------------TAAAAACACAAACTAA-------AAGTGAAAATATAAAGGAGATTTAAGCCATTTTTGCTTATGAAAACACAAATTTTCATTTAAAGTAAATTAAAGTACAATGTATTCAACAGATAAAAGCTTGAGGTTGTCACTATTAATA---AACATGAT--------ATTTAAACATTTACT----GGTTTTGTGAA-CGAATTAT a score=3015.0 s hg17.chr7_random 246589 33 + 778964 CACCAGCTTGACATTCATTTGAGAAAGTGAAAC s panTro1.chrUn_random 63440106 33 + 240967748 CACCAGCTTGACATTCATTTGCGAAAGTGAAAC s danRer1.chr23 22414610 26 + 22442303 TCCTAAATTAA-------GTGCTAAATTAAAAC a score=36971.0 s hg17.chr7_random 246622 426 + 778964 ATAAAGGAgagtaacataagcaagatgacagaatgggaggttcggcatgcacatcccccacaacataatgcagctgccacgggaaacataagtgcattcatgaaagccttagaatccagttcagagtttgtgacacccagctggaggcaaagaccaaggaagacatctttagagggtaagcacttgaccaagtggcaagcttgccaatcatggtcctcggttcaaaacagaatactaccaca-tcttactgtaaacttggctatgactcatttgaacttggtcctgccactgcaaaaatctgtgaaaaacacaaaagaattcatactcatctgagacttaggtgacaggcctgcagaacttggttctctctatagtccctgaatcaggcaaaacacaccttctttccttctccagccatggtctgga s panTro1.chrUn_random 63440139 425 + 240967748 ATAAAGGAgagtaacataagcaagacgacagaatgggaggttctgcatgcacatcccccacaacataatgcagctgccacaggaaacataagtgcattcatgaaagccttagaatccagtt--gagtttgtgacacccagctggaggcaaagagcaaggaagacatcttcagagggtaagcacttgaccaaatggcaagcttgccaatcatggtcctcgcttcaaaacagaatactaccacactcttactgtagacttggctacaaatcatttgaccttggtcctgccactgcaaaaatctgtgaaaaacacaagagaattcatactcacctgagacttaggtgacaggcctgcagaacttggttctctctatagtcgctgaatcaggcaaaacacaccttctttccttctccagccatggtctgga a score=554.0 s hg17.chr7_random 247048 5 + 778964 AGAAA s panTro1.chrUn_random 63440564 5 + 240967748 AGAAA s fr1.chrUn 307421274 5 + 349519338 AGCAT a score=5000.0 s hg17.chr7_random 247053 32 + 778964 TCTTCACATTGATATGATGAAATGC---TAACTAA s panTro1.chrUn_random 63440569 32 + 240967748 TCTTCACATTGATATGATGAAATGC---TAACTAA s canFam1.chr20 8576639 31 - 61172541 TCTTTAAGTTGAAATGA-AAGGAGC---TAATTAA s fr1.chrUn 307421279 28 + 349519338 TTTTCA-------ATAAAGACATACAAATAACCAA a score=7568.0 s hg17.chr7_random 247085 73 + 778964 CA---ATATGAAAAATACTAAAGT--ATAAATGTCACTAAAAATGGTAAATACATACTGAA-ATTCAGAATACTCTAAA- s panTro1.chrUn_random 63440601 73 + 240967748 AA---ATATGAAAAATACTAAAGT--ATAAATGCCACTAAAAATGGTAAATACATACTGAA-ATTCAGAATACTCTAAA- s canFam1.chr20 8576670 72 - 61172541 TA---ACA-GGAAAATACGAAAGT--ACAAATTACACTGACAAAGGTAAATATATAGTAAA-ATTCAGACTAATGTAAA- s fr1.chrUn 307421307 69 + 349519338 CACGCATATAAAAAACAT----GC--TCAATCTCAACTAAAAA---TAAAACTACGATTTG-ATTCAGAAACCTCATCA- s danRer1.chrNA 178781331 76 - 390413307 ---CCACAGGAAAATTATTAGAACTGATAAATT-CAGTAAAGTTGCAGGATACAAAATCAACATACAAAAATCACTAGCA a score=-1151.0 s hg17.chr7_random 247158 3 + 778964 -TTG s panTro1.chrUn_random 63440674 3 + 240967748 -TTG s fr1.chrUn 307421377 2 + 349519338 --TG s danRer1.chrNA 178781407 3 - 390413307 TTT- a score=6354.0 s hg17.chr7_random 247161 125 + 778964 TTATCATCTTAAACTAGACTATTA-AAATACAAGAGG-TTTTACATAAGTCTCAT-----GATAACCACTGGGGGAAAA---------AAAAACATA--------GTAAA-----GAAAAAGAG----AAAG-------TAATTAAAGC----ATACACAAACAACAAA s panTro1.chrUn_random 63440677 123 + 240967748 TTATCATCTTAAACTAGACTATTA-AAATACAAGATG-TTTTACATAAGTCTCAT-----GATAACCACTGGGG--AAA---------AAAAACATA--------GTAAA-----GAAAAAGAG----AAAG-------TAATTAAAGC----ATACACAAACAACAAA s mm5.chr2 165105173 129 - 181686250 TTATTAGTTTAAAATAGACTGGTATGCCTTCAAGATG--TTTATATAAGCCTCAT-----GATAACCATTGGGA--AAA---------AAAAATCTACCTTAGATGT-AG-----GACAAAAAA----AAAG-------TGAACACAGC-----TATACAAACACTAAA s fr1.chrUn 307421380 127 + 349519338 GTATCTACTCAAAGAAAATTAGTT-TATTACATGAAAATGATACCTAA-TATCACCTACAAATAGGCAACTGCA--AAT---------GAAAACA----------GTGAT-----GAGGTATGACTTCAAAT-------CTGTTAAAAT-------TACTAATATCAAA s danRer1.chrNA 178781410 144 - 390413307 CTATATGCTTAGAGTTAACAGTGT-GGAAAAAAAAAG---TTATCCCA--TTTAC-----AATGGCCACACATA--AAATTAAAAATTAAATACCTA--------GAAATTAACCTAAGAAGTG----AAAGATCTCTATAATGAAAACTGTAAAACACCAATGAAAGA a score=21824.0 s hg17.chr7_random 247286 68 + 778964 AATTACACA-----TTGGATACAGTGGCTCCTGCTTATAATTCCAACACTTTTGGAGGCCAAGGTGGAAGAAT s panTro1.chrUn_random 63440800 68 + 240967748 AATTACACA-----TTGGATATGGTGGCTCCTGCTTATAATTCCAACACTTTTGGAGGCCAAGGTGGAAGAAT s fr1.chrUn 307421513 68 + 349519338 AAATAGAGG-----CTGGGCACGGTGGCTCACGCCTGTCATCCCAGCACTTTGGGATGCCAAGGCGGGAGGAT s danRer1.chrNA 178781554 73 - 390413307 AATTGAAGAGGAGCCCGGTTGCGGTGGCTCAGGCCTGTAATTCCAGCACTTTGGGAGGCTGAGGTGGGCAGAT a score=573.0 s hg17.chr7_random 247354 2 + 778964 CA s panTro1.chrUn_random 63440868 2 + 240967748 CA s fr1.chrUn 307421581 2 + 349519338 CA a score=15381.0 s hg17.chr7_random 247356 165 + 778964 TAAGCTCCTTgggtgttgtggtacgtgtccaagtagtccaagctacttgggtggctaaggggggaggattgcttgagcccaggagattgaggctacagtgagctgtgatatgccactgaacttcagtctgagcaagaaagcataactttgtctcaacaaaaaTGA s panTro1.chrUn_random 63440870 165 + 240967748 TAAGCTCCTTgggtgttgtggtacatgtccaagtagtccaagctacttgggtggctaaggtgggaggattgcttgagcccaggagattgaggctacagtgagctgtgatatgccactgaacttcagtctgagcaagaaagcataactttgtctcaacaaaaaTGA a score=1973.0 s hg17.chr7_random 247521 13 + 778964 ACAATACCACAGG s panTro1.chrUn_random 63441035 13 + 240967748 ACAATACCACAGG s canFam1.chr20 8577198 13 - 61172541 ataaaattacaaa a score=11528.0 s hg17.chr7_random 247534 108 + 778964 AAAGACAGAAC-CAGAAAAAAAAGAAGCAAACTTAA--AATGGACAGAAAAC------TACAAATGTACAATAGTAACTGCTTACTTATCACTAC--CTTACAA-ATAAAAAGATTAAAT s panTro1.chrUn_random 63441048 108 + 240967748 AAAGACAGAAC-CAGAAAAAAAAGAAGCAAACTTAA--AATGGACAGAAAAC------TACAAATGTACAATAGTAACTGCTTACCTATCACTAC--CTTACAA-ATAAGAAGATTAAAT s canFam1.chr20 8577211 99 - 61172541 agagacagaac-----aaatcacaaaacagccagaa--aacag--tgaaaac----------aatggctattagtacatacctatcaataattac--tttaaaatattaatggactaaat s danRer1.chr23 22414948 119 + 22442303 AAATTCAAAACACAGTTCATAAATATGCAAATTATATTATTAAATTCAAAATATGATTCATAAATATGCAAATGCAATTCCTAAATTCAAATTACAATTCATAA-ATATGCAAATCTAAT a score=2641.0 s hg17.chr7_random 247642 18 + 778964 TATCTACTAAACAGATAC s panTro1.chrUn_random 63441156 18 + 240967748 TATCTACTAAACAGATAC s canFam1.chr20 8577310 18 - 61172541 tctccaatcaaaaggcac a score=30647.0 s hg17.chr7_random 247660 344 + 778964 TTctgtagactgaatgtcatctccaaaatttaggataaaatggccaatgtgaaagaattaagaggtggaacctttaaaaattaattaagctataagcactctgccctcatgaatggattaatgttcttattatgggaatgggctaattttaacaagaatggatctgttatatattaaaaaaaaaaaa-gctgtctctccctcacatctttggccatgttattatccagcaactagaccttcaacagataccagtaacatgttcttttaccttcccagcctccagaatcatgagtcaaataaaattctgttctttattaattaccagtctgtgatattctgttata s panTro1.chrUn_random 63441174 345 + 240967748 TTctgtagactgaatgtcatctccaaaatttaggataaaatagccaatgtgatagaattaagaggcagaacctttaaaaattaattaagctataagcactctgccctcatgaatggattaatgttcttattatgggaatgggctaattttaacaagaatggatctgttatatattaaaaaaaaaaaaagctctctctccctcacatctttggccatgttattatccagcaactagaccttcaacagataccagtaacatggtgttttaccttcccagcctccagaatcatgagtcaaataaaattctgttctttattaattaccagtctgtgatattctgttata a score=45296.0 s hg17.chr7_random 248004 367 + 778964 acagccaaaagagactaaagcaGacagagtggataaatgaaacttttaaacctcgtaatatgctgcttacaagagactcaattatgaattaa-gagcataggctaaaagtgaaaggatagaaaatgatattccatgcaaataatagccaaaggagttcaatggtagttatgcttaaattagacaaaatagactttctagcaatgtctctcacaagcatgaaatgagtttaccatacaataataatagaggttaat-ttgtcaagtgaatatagctatatatatttatgcacccaaaagggaggcttctaaatataaaaagcaaatatgggcagaactgtagggagaagtagaaagaaatccaataatag s panTro1.chrUn_random 63441519 368 + 240967748 acagccaaaagagactaaagcaGacagagtggataaatgaaacttttaaacctcgtaatatgctgcttacaggagactcaattatgaataaaagagcataggctaaaagtgaaaggatagaaaatgatattccatgcaaataatagccataggagttcaatggtagttatgcttaaattagacaaaatagactttctagcaatgtctctcacaagcatgaaatgagtttaccatacaataataatagaggttaat-ttgtcaagcaaatacagctatatatatttatgcacccaaaagggaggcttctaaatataaaaagtaaatatgggcagaactgtagggagaagtagaaataaatccaataatag s canFam1.chr20 8577841 297 - 61172541 ACAAACAAAAGACCT-----CAGGTGGAAAGGATAAA-----------------------------TTGaaagtgac------------------atacagactgaaagtaacaggatgggaaaaattattccatgcaaatgaaaactaaa-------actagatgtttt------atgagataaaacaggctttaagacaaaaactgtaatgagac--aaaggaagtcattatataatgataa-aggggtgaatcccattaagaggatatatttgtgaatatttatacactcaaaataggaggacctaaatatataaagcaaatattaacagacctaaagagagaaacagcaata----caatagtgg a score=919.0 s hg17.chr7_random 248371 10 + 778964 aaaactttaa s panTro1.chrUn_random 63441887 10 + 240967748 aaaactttaa a score=2432.0 s hg17.chr7_random 248381 12 + 778964 tGAAATGTATAA s panTro1.chrUn_random 63441897 12 + 240967748 tGAAATGTATAA s canFam1.chr20 8744064 12 - 61172541 TGAAATGCACCA a score=7874.0 s hg17.chr7_random 248393 91 + 778964 TAAAGGACAAATAGTTAA----------CAGCATTGTGAATTTGCAAGGGAAAGCTGTTCTCCTGTGTTGCATTTGAGAATGCAGCAAAGAAAGTGGGAAC s panTro1.chrUn_random 63441909 92 + 240967748 TAAAGGACAAATAGTTAAT---------CAACATTGTAAATTTGCAAGGGAAAGCTGTTCTCCTGTGTTGCATTTGAGAATGCAGCAAAGAAAGTGGGAAC s canFam1.chr20 8744076 76 - 61172541 CGGAGGACAAACAGCTGATA-------CTGATGCTCTGAACTGGACAGGGGAAGCTG------------GCGTCTGGGGACGC------GGGGGCGGGATC s danRer1.chr23 22415096 86 + 22442303 TAAAACACAATTCATAAATATGCCTATTCAAT-TCGTAAATTTG-------AAACAGTTCAT-------GAATATGAAAATTCAATTAGTAAAATCAAAAC a score=16779.0 s hg17.chr7_random 248484 111 + 778964 TGATAAT-----TTTACCACAAGCCTGAGT------TAGGCTGAAAAACAGGGTGGTCGATTAGAGGTTCCACTTGCCATATATTAAAAAAACACAGGAGAAAACCAGTCCTCCTCTGGAGt s panTro1.chrUn_random 63442001 111 + 240967748 TGATAAT-----TTTACCGCAAGTCTGAGT------TAGGCTGAAAAACAGGGTGGTCGATTAGAGGTTCCACTTGCCATATATTAAAAAAACACAGGAGAAAACCAGTCCTCCTCTGGAGt s canFam1.chr20 8744152 122 - 61172541 TGGAAACAAGCATTTATTGCCAGTCCCAGGAAAGGATAGGCTTGGGGACAGGGTCGTGGATTTGAGGCTCAGTTTTCCAAACATCTGGAACACTCAGGAGAAAACAGGTGCCCCTTGGGAGT a score=259039.0 s hg17.chr7_random 248595 2969 + 778964 gttaaaataattaaagagcagaaaattagactaaagtggctctagtgtcctgggttcataggttaaaaaaaaaaa------aacaaa--aactaaaacctaactcaaatacatttcctataaagcattatcttagcctgaaacaaaatgcacgtttaaccaatggcaaacatgcaattaacctctgaatatgtaaccaggacatttccatctggatagttcaaataaggtgactacataactggaaccaatttttgaatttgggctgctttctcatgcatcttatgaaagcctttcctttatgcccctctggtggaccagaaatcatggctgggtgctttccatttcaccaatcactgtttgttcagataaactggttaacgttttaacatagactcccgttaatttttaacaagagagactggggaccccacgggccgcagctcctcccacgcaaacacccagtggcagtttttccctgatgacccaccaggcctccctgaacaatctgggaaatactcatggctgtgggcgcagagcagggcgctgcccagggacagcaccggatgggccaggccggatgtgggggtcctcgatgctggcccagcggccatcttgcagccacaggggactgagggccaagctgcgggagactcggagctaaccgtgggg--gccggtcctgccggtttcacagcctgctctcccctctcgggatgccg-aaccccgtatactcaccatttcccagcttccaggatgtcctgtcatcttaactgtgcgtccccaaggacctacagatcacagggcaacagggg-ctgtgaaagagtagcccggggctcccaaagcggaggaggcgaaagaggagacggatcccaagttcctgtgccagcgccagcgagagacaaaga-cccgccaaacgccagaagccacgccctcctctcctgtcctctccaactgcgcgcctgattgggctgttcccacatcagtgtcaatgactgga-taaaactccaggactcacccACCCCCGCCTGACTCCTGCCCCTACCCCCACTCCCCCTCAGCCTTAGTGCAtttttgttagtttgttttactttaagttctggaatacatgtgcagaacgtgcaggtttgttacataggtttacatgtgccatggtggtttgctgcttctatcaacctgacgtctaggatttaagccccatatgcattaggtatttgtcctaattttctccctcccc-ttgacctcaacaccctaacaggccccagtgtgtgatgttttgttcccggtgtccatgtgttctcattgttcaactcccacatatgagtgagaacatacggtgttctgtttcctgttcccgtgttagtttgctgaagagaatggtttccagtgtcattcacgtccctgcaaaggacatgaactcattctttttatggctgaatattatttcatggtgtatatgtgccacattttctttttccagtctatcaatgatgggcattaggttggttccaagtctttgttattgtaaacagtgctgcaatagatatatgagtgcatgtgtctttatgctagaatgatttatattcctttgggtatataaccagtaatgagattgctgggtcaaatggtatttctggttctagatacttagggaatcaccacactgtcttccataatggttgaagtaatttacactcccgcccccagcagtgtaaaagcgtttctatttctccatagcctcatcagcatctgttgttcctgacattttaataactgccattccaaatggtgtgagatggtatcccattgtggttttgatttgcatttctctaatcatcagtgatgatgagcttttttctttttcctttttgtgtgtttgttgaccacataaatgtcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcctcttcttcttctccttcttccttttctttttAtttattttatttattattattttaaagacggagtctagctctgtcacccaggctggagtgcagtggcaggatctcagctcactgcaacatctgccacccaggttcaagtgattctcctgccttatcctcccaagaagctggaatcacagccacccgccaaaacaccatgctaattttttgtgtttttagtagagacatggtttcaccatgttgcccaggc-tagtcttgaacacctgacctcatgatccacctgcctccatggctgaaagtcctgggattacaggcttgatcaaccacgcccagccaaatgtcttcttttgagaatagtctgttcatattctttactcactttttgatgttttttt--tgtgtgtgtgtgtgaaattaagttccttgtagattctggatattagacctctgacacatggatagattgcaaaaattttctgtcattctgtaggttgcctggtcactctgatgatagattcttttgctgtgcagaagctcgttagtttaattagatctcatttgtcaattttagcttttgttgtgattgcttttggtattttattcctgaagtctttgctcatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttgtggtttggtgttttatatttaagactttaatccatcttgagataatgtttgtataaggtgtaaagaaggggtccagttt-ctgttttctgaatgtggctagccagttctttcagcaccatttggtaagtagtaaatctttctccattgcttgtttttgtcaggtttgttagagatcagatggttgtagatgtgtgatgttattactgaggcctctgttctgttccattggtctatatatctgttttggtattagtactgtgctgttttggttactgcagccttgtagtatagtttgaagtcgggtagcaagatgccccaagctttggtgtttttgcttaggattgttttggGTTG s panTro1.chrUn_random 63442112 2970 + 240967748 gttaaaataattaaagagcagaaaattagtctaaagtggctctagtgccctgtgttcataggttaaaaaaacaaacaaacaaacaaacaaactaaaacctaactcaaatacatttcctataaaccattatcttagcctgaaacaaaatgcacgtttaaccaatggcaaacatgcaattaacctctgaatatgtaaccaggacatttccatctggatagttcaaataaggtgactacataactggaaccaattattgaattttggttgctttctcatgcatcttatgaaagcctttcctttatgcccctctggtggaccagaaatcatggctgggtgctttccatttcaccaatcactgtttgttcagataaactggttaacgttttaacatagactccccttaatttttaacaagagagactggggaccccacgggccgcagctcctcccacgcaaacacccagtggcagtttttccctgatgacccaccaggcctccctgaacaatctgggaaatacccatggctgtgggcgcagagcagggcgctgcccagggacaggaccggatgggccgggcgggacgtgggtg-cctcggggctggcccagcggccatcttgcagccacaggggactgagggccaagctgcgggagactcggagctaaccgtggggaggccggtcctgccggtttcacagcctgctctcccctctcgggatggcgtaaccccgtatactcaccatttcccagcttccaggatgtcctggcatcttaactgtgcgtccccaaggacgtacagatcacagggcaacagggggctgtgaaagagtagcccggggctcccaaagtggaggaggcgaaagaggagacggatcccaagttcctgtgccaacgccaggaagagacaaagatcccgccaaacgccggaagccacgccctcctctcctgtcctctccaactgagcgcctgattgggcggttcccacatcagtgtcaatgactggactaaaactccaggactcacccATCCCCGCCTGACTCCTGCCCCTACCCCCACTCCCCTTCAGCCTTAGTGCAtttttgttagtttgttttactttaagttctggaatacatgtgcagaacgtgcaggtttgttacatagttttacatgtgccatggtggtttgctgcttctatcaacctgacgtctaggatttaagccccatatgcattaggtatttgtcctaattttctccctcccccttgatctcaacaccctaacaggccccagtgtgtgatgttttgttcccggtgtccatgtgttctcattgttcaactcccacatatgagtgagaacatatggtgttttgtttcctgttcccgttttagtttgctgaggagaatggtttccagcatcattcacgtccctgcaaaggacatgaactcattctttttatggctgaatattatttcatggtgtatatgtgccacattttctttttccagtctatcaatgatgggcattaggttggttccaagtctttgtttttgtaaacagtgctgcaatagatatatgagtgcatgtgtctttatgctagaatgatttatattcctttgggtatatacccagtaatgagattgctgggtcaaatggtatttctggttctagatacttggggaatcaccacactgtcttccataatggttgaacttatttacaccccc---tccagcagtgtaaaagcgtttctatttctccacagcctcaccagcatctgttgttcctgacattttaataactgccattccaaatggtgtgagatggtatcccattgtggttttgatttgcatttctctaatcataagtgatgatgagcttttttcttttcc--ttttgtgtgtttgttgaccacataaatgtcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcctcttcttcttcttc------------tccttcttccttttcttctCAtttattttatttattattatttttaagacggagtcttgctctgtcacccaggctggagtgcagtggcaggacctcagctcactgcaacatctcccacccaggttaaagtgattctcctgccttatccccccaagaagctggaatcgcagccacccgccaaaacaccatgctaattttttgtgtttttagtagagacatggtttcaccatgttgcccaggcctagtcttgaacacctgacctcatgatccacctgcctccacggctgaaagtgctgggattacaggcttgatcaaccacgctcagccaaatgtcttcttttgagaatagtctgttcatattctttactcacgttttgatgtttttttcttgtgtgtgtgtgtgaatttaagttccttgtagattctggatattagacttctgacacatggatagattgcaaaaattttctgtcattctgtactttgcctggtcactctgatgatagattcttttgctgtgcagaagcttgttagtttaattagatctcatttgtcaattttagcttttgttgtgattgcttttggtattttatttctgaagtctttgctcatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggtttggcgttttatatttaagacttcaatccatcttgagaaaatgtttgtataaagtgtaaggaaggggtccagttttctgttttctgaatgtggctagccagttctttcagcaccatttgttaagtaggaaatctttctccattgcttgtttttgtcaggtttgtcggagatcagatggttgtagatgtgtgatgttattactgaggcctctgttctgttccattggtctatatatctgttttggtatcagtactgtgctgttttggttactgcatccttgtagtatagtttgaagtcggttagcaggatgcctcaagctttgttgtttttgcttaggattgttttggGTTG a score=92619.0 s hg17.chr7_random 251564 716 + 778964 ACAGGCACACaggctcgtat-agttggggtcacctgcccagagtatcacagctaat-taagaagtgagctgagact-----tgaaATGCACATGCTCCTTCCCTTACCTGGG-TCTGTTGTATAA-TGCATCTTAGCAGCTATTTAACAGTAGGAATTAGAACATTT-GGACATCTTTTTAACAACTTTTTAACCTGCATTTTGATAAT-GCAGGAAAGACCTTCATCCCGTCCCTGAGCCCCTCTCTCACCACGCTACATCCCACTGCTGACCACATTGTAGGGTAGCCATTAGGAATCAGGCGGGCAGTGGGGGCTGGGAATAAATAAGCAAGGATTATGCTGCCCAAATTTGCTCATCTTAGAAAGTCTCCTCAACCATTCTGTGTGAAGTGATTATTCC-AGGGTAATTGTGGCCTGACTGCGCTGGATGTCAGTGTGACTTGTCTTTTTGAAAATCACTGGATTACTCTCATGAACGGGGGTATTTCTC--TTTCTATTTGAAAACGGCCAACTGTCCTCTGCAGGTGTCC-------------------TGATTTGCTAGTTTAGACCCTGAAGGTAGCGGTGAGAAAATATTTGGGCCACAACAGAATACCTATTCTCAGCTGGAAGATATATAGAAATTTCTTAATAATATCTAACCA---TTTTCTCAATAACCATTATATTTAACATTGATAGCTTGGAGGGCAGGGAAGGACACA------------------GATGACACAATCTTCAAAGTTTA-----TTT s panTro1.chrUn_random 63445082 725 + 240967748 ACAGGCaaacaggctcatat-agttggggtcacatgcccagagtatcacagctaat-taagacgtgagctgagact-----tgaaATGCACATGCTCCTTCCCTTACCTGGGGTCTGTTGTATAAATGCATCTTAGCAGCTATTTAAGAGTAGGAATTAGAACATTTTGGACATCTTTTTAACAACTTTTTAACCTGCATTTTGATAATAGCAGGAAAGACCTTCATCCCATCCCTGAGCCCCTCTCTCACCATGCTACATCCCACTGCTGACCACATTGTAGGGTGGCCATTAGGAATCAGGCAGGCAGCGGGGGCCGGGAATAAATAAGCAAGGATTACGCTGCCAAAATTTGCTCATCTTAGAAAGTCTCCTCAATCATTCTGTGTGAAGTGATTATTCCGAGGGTAATTGTGGCCTGACTGCACTGCATGTCAGTCTGACTTGTCTTTTTGAAAATCACTGGATTACTGTCATGAACGGGGGTATTTCTC--TTTCTATTTAAAAACGGCCAACTGTCCTCTGCAGGTGTCC-------------------TGATTTGCTAGTTGATACCGTGAAGGTAGCGGTGAGAATATATTTGGGCCACATCAGAATACCTATTCTCAGCTGGAGGATATATAGAAATTTCTTAATAATATCTAACCA---TTTTCTCAATAACCATTATATTTAACAGTGATAGCTTGGAGGGCAGGGAAGGACACA------------------GATGACATAATCTT-AAAATTTAATTTGTTT s canFam1.chr9 39339443 694 + 53642819 ACAAGAAAACAGGTGCACTTGAGGCAAGGTCTTAGGCCAAGGGTATTAATACTAATCTAGAAGGGGAGCTGGGACTCCAACCCAAATGCGCAGGCTCTTTCCCTTACCTGGT-TCTGCC-TGTTA-GGCATCTTGTTAGC----TAAGTGTAAGG---AGGACCTTC-TGACCTCTTT-------CAGTTTAACC-----TTTAGCCAT-GCAGGAATGACCCTCGTCCCATCCCGGAGGCCCTCT---ATCACATTGCACCACACTGGGAACT---CTGTGAGAAGGCCATTAGGAATGGGGC-------GGAGCCTGGGAATGGGTCAGCAAGGATTATGCTGCCTACACTTGAAC-TTTTGGAAAG-CTCCTAAATCATTCTTTGTGAAATGACTGTTCTCAGGATAATTCGGTCCTGCCTAGTCTGCATCTC--TCTCTCTTTTTTTTTTTTTAATCAATGGATTTGCCTAAT-----GGGGTTTTTCTCAGTTTACATTTGAG---GGCCACCTGTCCTCTGTAGGCGTCCTGATTACACATGCCTTGCTTGATTTGATAGTTTAGACCCTGGCAGGAGGAATGTGATAAC--------------------CTTGTTCTCTGCCTCAGGGTATACAG--GTTCCTGGGTGCAGTCTAACTAGAGCGCTCTCAATACCC-----ATTTCACAAAGGCAGTTTGCAGGGCATGAGTGGAGACATAAAATCTTTTTTTCCTTGATGATACAATCTTCAGAGCTAA-----TTT a score=31862.0 s hg17.chr7_random 252280 419 + 778964 ATAAGTTttttttttttgttcttgtttagttttgcttagtttttggatacaaggtcttgttctggtgcccagggtggagggcagtggcataatgataactcaTAATTTGGTTGTAACGGTTCTTTAAAATATATTTTTgctgagagtgctagctcacacctgtaatctaaa-cacttt-gggtggtcaaggtgggattatcgcttgatcccaggagtgcaagacgagtctgagcaacataagtaggctcagtctctagaaaaatatttaaaaattgtctgggtgtagctttgcatgcctgtagtcccagctacttgagagg-ctgatttgaaagcatcactggagcctaagaatttgaagatgcagtgacccatgattcagccactgcattgacagagtgagaTAtgtgtgtgtgtgtctgt s panTro1.chrUn_random 63445807 416 + 240967748 ATGAGGttttttttt--gttcttgtttagttttgcgtagtttttggatacaaggtcttgctctgctgcccaggctggagggcagtggcataatcataactcaTAATTTGGTTGTAACGGTTCTTTAAAATATATTTTTgctgagagtggtagctcacacctgtaatctaaaacacttttgggtggccaaggtgggatgatcgcttgatcccaggaattcaagacgtgtctgggcaacataagtaggctcagtctctagaaaaatatttaaaaattgtctgggcgtagctttgcatgcctgtagtcccagctacttgacagggctgaggtgaaagcatcactggagcctaagagtttgaggctgcagtgaaccaagattcagcccctgcactGACAGAGTGTGACGTGTGTGTGTGTGT---- a score=40076.0 s hg17.chr7_random 252699 320 + 778964 gtgtgtgtATAAAGAATTTGTATGTGAAAAAAATTCAAGCACAGGATAAAAGT----GAAAGCCCACGGTGGGGGATGTGGAGAAAGGTCACTGTGGCTCCAGCAACTCAGTGAGACTTGGTTTTCCATCTTGAAGAATTGCCCATCCACACTGACACCATAGCCTAACATATGCCAGTTCTCACACTACACCTGCTGGGATACCAGTATGTAGCCTTTTGAAAAAAATAAAATCTT-TCACCTAAGAGAAGGACAAGAGAAAACGAGGGTTTCACATCTAAAGCCTTCATTTTCTTTATGAATCAACAGCCACTTGTCATTTGA s panTro1.chrUn_random 63446223 316 + 240967748 ----GTGTATAAACAATTTGTATGTGAAAAAAATTCAAGCACAGGAGAAAAGT----GAAAGCCCATGGTGGGGGATGTGGAGAAAGGTGACTTTGGCTGCAGCAACTCAGTGAGACTTGGTTTTCCATCTTGAAGAATTGCCCATCCACATTGAAACCATAGCCTAACAAATGCCCGTTCTCACATTCCACCTGCTGGGATACCAGTATGTAGCCTTTTGAAAAAAATAAAATCTT-TCACCTAAGAGAAGGACAAGAGAAAACGAGGGTTTCACATCTAAAGGCTTCATTTTCTTTATGAATCAACAGCCACTTGTCATTTGA s canFam1.chr9 39340160 294 + 53642819 GTATTTATAAAAGTAACATGCATGTT----AAATCCAAAC-----AGAAGAGTTTTGGAAAGACTAGCATGGGGTACAT-GAAACGGGTGGGTGTGGCTCACACAATTT----AGACTTAATGTT-AGTCTTCAACAGGTGCCCATCAACAC--AGACCATAACCTAAC--ATGCTGGCTCCCACACCAACCCTTCCTGGATACCACTA-GTCACCTTATTTTAAAAATGGCATTTTGTCAACTAAGAGGA---------AAAGAGTGGATTTCACACTTAGAACCTTTTGTTCCCT--TTAAACAACAGTCCCTTATCATTTGG a score=42178.0 s hg17.chr7_random 253019 293 + 778964 ATTGTCC-AGAGGCGACTGACAGCACCAATACACTTAA-TGAATCAACCAGGAAAAATGGGCCTCTCAGGTGAGGAGGAGGCACAATGGTCACAAAACCCAATCCGT---------TCTCAGCTTTGC---ATGGTGCTCGCATCTCAAGAAGTGGTG-----------------------------------TTAGCCATGTGAACCGTGTTCACTGG-----------ACAAGG-CCAGA--------GGAAAGAATATTTAGTACAA-CACAACTATGGG-------GCTGCAAATCA--AACTGGTAGTGAGA-------GCATGCATG--AGGCTTCAGTGGCCGAGA-CACTGGTGGCTACCCTTCGG-TGTC-------ACTT s panTro1.chrUn_random 63446539 294 + 240967748 ATTGTCCCAGAGGCGACTGACAGCACTAATACACTTAA-TGAATCAACCAGGAAAAATGGGCCTCTCAGGTGAGGAGGAGGCACAATGGTCACAAAACCCAATCCCT---------TCTCAGCTTTGC---ATGGTGCTCGCATCTCAAGAAGTGGTG-----------------------------------TTAGCCATGTGAACCGTGTTCGCTGG-----------ACAAGG-CCAGA--------GGAAAGAATATTTAGTACAA-CACAACTATGAG-------GCTGCAAATCA--AACTGGTAGTGGGA-------GCATGCATG--AGGCTTCAGTGGCCGAGA-CACTGGTGGTTACCCTTCGG-TGTC-------ACTT s mm5.chr11 47364496 368 - 121648857 ATTTTAC-AAAGGAATTTAATAACACTAATATGCTTAAGGGAACCAACCAAGAAAAATGGGCTTCTAGGGTGACTTGTAAGCAT-CTGATTAAACTATTAAGCTCATGCAGAGCAGCCTCAACTTTGT---GTGATGTC--CCTTTCCAGAAGTGGGGAGTCCAACAAGTCAACAAACACATTTACGACAAAATGAACCAGGTGTCATGTGCACACCGGTAACCAGGAACTCAAAG-TCACACTCAGCTTAAAAGGGATTTTGAGGCCAGTCTTGGCTCTAAGAGACCTTGCTTCAAATCACCAAATTATAAAGGGA-------ACATACACAGTAGGCTTAAATGGTCAAAATCATTGGTAAGTACTTAACGGATGTT-------ACTT s canFam1.chr9 39340454 294 + 53642819 CTTGTTG-GAAGGTATCTGACAGCACCAATATCCTTAA-CGGATCAACCATG-AAAACGGGCCTTCTAGGTGACTGGTGGATACAATGGTAATTAAACCTGAGCATT---------TCTCAGCCTTACCAGATAATGCCC-CCCTTCTGCAAGTGCTG-----------------------------------TGAAGCACATTGCTGGTGTTCAGAGG-----------ACAAAGACCATA--------GGAAGGCACGTTCAG---AA-CACAACCTTGAA-------ACTGCCAAGGA--AAGTGGTGGTGGGGGCGGGGTGCATGCATC--AGGCAGCAACGGGGATTC-TACCGGCA-------------TGGCTTAGAAAACTT a score=11987.0 s hg17.chr7_random 253312 111 + 778964 AAACCTTTGAGGTGAAGGACATCTTTTTTCCC-AACTGGCTCAGAGAAACCAATCAACATTAAAATTGAGATTTGTTTTTCTTTT-CAAAATTTCTAAGACACAG------AGGACTCT----- s panTro1.chrUn_random 63446833 113 + 240967748 AAACCTTTGAGGTGAAGGACGTTTTTTTTCCCCAATTGGCTCAGAGAAACTAATCAACATTAAAATTGAGATTTGTTTTTCTTTTTCAAAATTTCTAAGACATAG------AGGACTCT----- s mm5.chr11 47364864 103 - 121648857 AG--TATCAAGATCAGAAACATCTTTCTCCC---ACTGGCTTAGGAAAA--AAGGATCAC--AAATTAGGGCTGGTATTTTTCAT---AAAGTCATAAAATGTAA----CTAGGACTTT----- s canFam1.chr9 39340900 111 + 53642819 ACAACTTCAAGGTCAAGGATGTCTTTCC-----AGTTGGCTCAGGAAAAGTAAC--------AAGTTGGAATATTTTTTCTCTCCAGAGAATTTGTTAAAGACAAAAAAAAAAAACTCTCCCCA a score=58371.0 s hg17.chr7_random 253423 516 + 778964 AACACTCCAAAAGACATTCAGATATTCTTGCAGCTGAGGACTTGACTGCTCTGTAGAGGGATGGCAGAGCAGCAGCCACCAGCTTTAAGAGCTTTAAGCTCCTCCTCTTATAGGGAAAGGCCACCCCC-ACACAACCCCCATAACTTCATAGGCTCTGGCTGTTAGGTGCA-CCTGGGGGACTGTCTTCCTCCCATCTCATTAGCTCTCCA--AGACAGTTCAGC-TCAATCTAAAACCTACCCTAAGATGGCGGTATGTAGACTCTCCTCCATTCTCCCAGCGCAGTGTGACTTCTGGAGAGTGCTCCCCCATCGTCTTACCTCAAATGATGTGAAAAGAGCTGGTTCCCGGGTAGTTAGATGTTCAG-TGA-CCTAACAGGCCCAGCATGCGCAGGGCCTGGCCCCACAGCCTGGCACCTCTCTCCTACCTG---GCCTTCACTTCGGCCTTTTCTCTTCTGTCACCAATGTCAGGTGATGGTCACCAGTGCCACACTCTCATGAGCTTGGTAAGTAGCAGGGG s panTro1.chrUn_random 63446946 523 + 240967748 AACACTCCAAAAGACATTCAGATATTTGTGCAGCTGAGGACCTGCCTGCTCTGTAGAGGGATGGCAGAGCAGCAGCCACCAGCTTTAAGAACTTTAAGCTCCTCCTCTTATAGGGACAGGCCACCCCCCACACAACCCCCTTAACTTCATAGGCTCTGGCTGTCAGGTGCATCCTGGGGGACTGTCTTCCTCCCATCTCATTAGCTCTCCACAAGACAGTCCAGCCTCAATCTAAAACCTACCGTAAGCTGGTGGGATGTAGACTCTCCTCCATTCTCCCAGCTCAGTGTGACTTCTGGAGAGTGCTCCCCCATCGTCTTACCTCAAATGATATGAAAAGAGCTGGTTCCCAGGTAGTTAGATGTTCAGGTGAATCTAACAGGCCCAGCATGCGCAGGGCCTGGTGCCACAGCGTGGCACCTCTCCCCTACCTG---GCCTTCACATCGGCCTTTTCTCTTCTGTCACCAATGTCAGGTGATGGTCACCAGTGCCACACTCTCATGAGCTTGGTAAGTAGCAGGGG s canFam1.chr9 39341011 463 + 53642819 AGTACCCAGAAAGGTATTCAAGTA----TGTTGCTGAGGCCTTACCTGCTC-----AAGGATGGCCAAGTAGCAGCTGCCAGTTATGGGA--------CTTCCCTTCT--------CAGACAGCTCCCCTCAGAACCTTTCCCACCTCACAGGCCCTGCCCCTCAAGCCCC-CTCTGGGGTTACCCTTTCCTCCATCTCACTGAGTCTCC---AGAGAGCCTAG--TCCACCCAAAATTTACCCTAGGACAGCA--AACTTGACACCCCTCCATT---TCAGCACTCCTAGTCTTCCAGGGGTTGCTGCCC---AGTTCTGACTCAAAGG----GACAAGCACAGATGCTCAA--AATCAGGTGTTCAG-GCA-CCTATCAGGGCCAGCAGGTCCAGGCCCTGGGCCCCTACCCTACCCCACCCCTCATTCCCATCCGCCTTCACTCTAACCTGT-----------ACCACACACAGCT-----CTACGAAGGAGCCATTCTCATAGGTCTAGTGACTGGAAGTCA a score=9123.0 s hg17.chr7_random 253939 34 + 778964 TGTAAACCCCAACAGATTTCCTGTGACTCTACCC s panTro1.chrUn_random 63447469 34 + 240967748 TGTAAACCCCAACAGATTTCCTGTGACTGTACCC s rn3.chr10 48766988 34 - 110733352 TGTAGGGCCCAGCTGGATAGCTGGGGCCATACCC s canFam1.chr9 39341474 34 + 53642819 GGTAAACTCTAGCTGGGCGCCTGTGACTCCACCC a score=875.0 s hg17.chr7_random 253973 4 + 778964 TCTT s panTro1.chrUn_random 63447503 4 + 240967748 TCTT s canFam1.chr9 39341508 4 + 53642819 CCTT a score=251.0 s hg17.chr7_random 253973 4 + 778964 TCTT s canFam1.chr9 39341508 4 + 53642819 CCTT a score=0.0 s hg17.chr7_random 253977 14 + 778964 ACCTCCCACTCAAG a score=91.0 s hg17.chr7_random 253977 1 + 778964 A s panTro1.chrUn_random 63447507 1 + 240967748 A a score=0.0 s hg17.chr7_random 253977 2 + 778964 AC a score=300.0 s hg17.chr7_random 253978 1 + 778964 C s panTro1.chrUn_random 63447508 1 + 240967748 C s mm5.chr11 47365321 1 - 121648857 C a score=5053.0 s hg17.chr7_random 253979 12 + 778964 CTCCCACTCAAG s panTro1.chrUn_random 63447509 12 + 240967748 CTCCCACTCAAG s mm5.chr11 47365322 12 - 121648857 CTTCCACTTCAG s rn3.chr10 48767022 12 - 110733352 CTTCCACTTCAG a score=133866.0 s hg17.chr7_random 253991 305 + 778964 TGACATTATAAGCATAATTTTATATTTGATCTAATTTATGCATA------------------ACCTTTTTATAACATTT-CTGACAAC--AGCCCACACAACCA--CA-TGAGTCTGGGTTACAGAACACACGGGCGAGGCTCGGGTAGCAGGTTTC----ACTTACTTTATTCCAATGTGAAATGAAGAT-TGATGATTTAAAAACAAGACAAAGTTGTTTATCAGCTGTGGGGTGGCTACACTTGCTATCTCATGCTCACTTCCTTTGAAACAAGGTATCTGGACAGACCATATTCATAAGTAAGACTTCGCAAAACCTCAGACAGAAGTTC s panTro1.chrUn_random 63447521 307 + 240967748 TGACATTATAAGCATAATTTTATATTTGATCTAATTTATGCATA------------------AATTTTTTATAACATTTTCTGACAAC--AGCCCCCACAACCA--CAATGAGTCTGGGTTACAGAACACATGGCCGAGGCTCGGGTAGCAGGTTTC----ACTTACTTTATTCCAATGTGAAATGAAGAT-TGATGATTTAAAAACAAGACAAAGTTGTTTATCAGCTGTGTGGTGGCTACATTTGCTAGCTCTTGCTCACTTCCTTTGAAACAAGGTATCTGGACAGACCATATTCATAAGTAGGTCTTCGCAAAACCCCAGACAGAAGTTC s mm5.chr11 47365334 301 - 121648857 TGAC---TTGAACATAACGTTGAGTTTGACATAATATATACACA---------------ATTACCTCCCAGCAGTACTT-CTGAGCCT--CACTCAAGCAATAG--GAACAAGTT----CCACAGAGCACACAGGAAAGGCTGGGGCAGCAGGTTTCAAAAACTCACTTTATTCCAATGTGAAATGAAGACGTGATGGTTTAAAAACAAGAAAACGTTCTTGAT-AGCTGTGGGGGTGC----CTTGCTGGCCCATGCCCATTCCCTTTGAAACAAGGTCCCTGGACAGATACTATCCATCAGCAGCTC-CAGAAAAGCCCCAAGCAGAGGCTC s rn3.chr10 48767034 297 - 110733352 TGGC---TTGAACATG---TTGAGTTTGACCCAATGTATGTGTA---------------ATTACCTCCCAGTAGTACTT-CTTACAGCTTCACTCAAGCAATAG--GAACACGTT----TCACAGAGCACACAGGGGAAGCTGGGGCAGCAGGTTTCAAAAACTCACTTTATTCCAATGTGAAATGAAGATGTGATGGTTTAAAAACAAGAAAACGTTCTTAGT-AGCTGTGGGGATGC----CTTGCTGGCC---GCCCATTCCCTTTGAAACAAGGTCCCTGGACAGATACTATCCATCAGCAGCTC-CAGAAAAGCCCCAAGTAGAGGATC s canFam1.chr9 39341512 327 + 53642819 CAATATTTTAAGGAGAGTCTTCCATCTGACCTAATTTGTACACATTCGTGTGTTTTAAACTCTTCTACTAGTACCAGGT-GTGGCAAC--AGCCCTCCCCCCAGATGGAGGAGACTG--GTACAGAGCACA--GGAGAGGCTGGGGCAGCAGGTTTCAAAAACTCACTTTATTCCAATGTGAAATGAAGACGTGATGGTTTAAAAACAAGAAAAAGTTCTTGATCAGCGGTGGGGAGGCTCCGCTTGCTAGCTCACACCCACTGCCTTTGAAACAAGGTATCTGGACAGACTATACCCATCAGCAGCTCCCCGCAAAGTCCCAGGCAGAGGCCC a score=3401.0 s hg17.chr7_random 254296 18 + 778964 CAG-TCAGACACAGCTCCC s panTro1.chrUn_random 63447828 18 + 240967748 CAG-TCAGACACAGCTCCA s mm5.chr11 47365635 17 - 121648857 T-G-CCTAAAACAGCTCCC s canFam1.chr9 39341839 19 + 53642819 CGGCCCAGGGACAGCTCCC a score=2670.0 s hg17.chr7_random 254314 105 + 778964 TCAGGCTC--AC-AGGGTGGCAACCGCCTCCATGTT-----------AGGCTCT--------------------------------------------------------GACAGC--------AGGCAAGGAAAGGAG-CACAGGCA-G----------------------------CAGGGGACAGGGAGG---GT--CCGGGACTGTA-----------------------------------------------GGGATCC s panTro1.chrUn_random 63447846 105 + 240967748 TCAGGCTC--AC-AGGGTGGCAACTGCCTCCATGTT-----------AGGCTCT--------------------------------------------------------GACAGC--------AGGCAAGGAAAGGAG-CACAGGCA-G----------------------------CAGGGGACAAGGAGG---GC--CCGGGACTGTA-----------------------------------------------GGGATCC s mm5.chr11 47365652 100 - 121648857 TTAAGCTC--AA-AGGGTGGCCATCTCCTTCAGG----------------------------------------------------------------------------GACAGC--------AGACAAAGAGAAGCGACACAGGCAGG----------------------------GAGGGGAGAGAGAGG---GCAGCCAAGGCAGTA-----------------------------------------------GGAGCCC s rn3.chr10 48767505 249 - 110733352 TCAGGCTCCACC-GAGGTGACAATCACTCCTAGGCA-----------TGGCACTTTCCCTGGGATCCACAATTCAGCCCTGGGTCCCACCCCTTACCCAACTATGCATTAGGCAGCTCAGGTTAAAATGGGGAGAAAGA-TACATTCA-GACTGTTGGCCCCCAAGGTTATGCTCACCCGGGGTACAGGGAGGCAAGT--CAAAGCCTGTGGTAGGACCACCTCTCCTGCTTGGCCAAAGCCAGGCACATGGATGTGTGGGGTCC s canFam1.chr9 39341858 113 + 53642819 --CAGCTC--ACTGGGGTGGCGAGCTCCCTGACCCACCGACCCATCGGGGCTCC--------------------------------------------------------AACAGC--------AGGCACAGAGAAGCAGCGCGGGCG-G----------------------------GCGGG---AGGGAGT---AG--CTGGGGCTCAT-----------------------------------------------GGGAGCC a score=-167.0 s hg17.chr7_random 254419 5 + 778964 CCAAA s panTro1.chrUn_random 63447951 5 + 240967748 CCAAA s mm5.chr11 47365752 3 - 121648857 C--AA s rn3.chr10 48767754 5 - 110733352 ACCAA a score=-1762.0 s hg17.chr7_random 254424 24 + 778964 TGCC----------------------------------CCAGAGCT---ATTCTCTGTAGA s panTro1.chrUn_random 63447956 24 + 240967748 TGCA----------------------------------CCAGAGCT---ATTCTCTGTAGA s mm5.chr11 47365755 22 - 121648857 CACC----------------------------------CCAGAGC-----TTCTTTGTATA s rn3.chr10 48767759 58 - 110733352 CGCTGGCCCCTTCCCTTCACCCTAAGGCTACAGGTAGGCCAGGCCC---AATCACAGTAAA s canFam1.chr9 39342337 27 + 53642819 TGCC----------------------------------ACAAAGCTGTGACTCCCCATCCC a score=1940.0 s hg17.chr7_random 254448 8 + 778964 AGGGCACA s panTro1.chrUn_random 63447980 8 + 240967748 AGGGTGCA s mm5.chr11 47365777 8 - 121648857 AGTGCTTA s canFam1.chr9 39342364 8 + 53642819 AGGACACA a score=-520.0 s hg17.chr7_random 254456 2 + 778964 CG- s panTro1.chrUn_random 63447988 2 + 240967748 CG- s canFam1.chr9 39342372 2 + 53642819 -GG a score=9377.0 s hg17.chr7_random 254458 106 + 778964 CAggtctcactgtgtcagtgcagtggctgaatcatgggtcactgcagcctcaatctcttaggctccagtgatgctttcacctcagcctctcaagtagctgTATGGC s panTro1.chrUn_random 63447990 106 + 240967748 CAggtctcactgtgtcagtgcagtggctgaatcatgggtcactgcagcctcaaactcttaggctccagtgatgctttcacctcagcctcttttgtagctgTATGGC a score=546.0 s hg17.chr7_random 254564 2 + 778964 AA s panTro1.chrUn_random 63448096 2 + 240967748 AA s canFam1.chr9 39342374 2 + 53642819 AA a score=9986.0 s hg17.chr7_random 254566 32 + 778964 AAAGCCTCC-TACTTTTTACTTAAAACCTGGAC s panTro1.chrUn_random 63448098 32 + 240967748 AAAGCCTCC-TACTTTTTACTTAAAACCTGGAC s mm5.chr11 47366190 33 - 121648857 AAAGCCCCCATCTTTTTTGGCTGAAACCTGGAC s canFam1.chr9 39342376 32 + 53642819 AGCTCCCCT-TCTTTTTGGCTTCAAACCTGGAC a score=82992.0 s hg17.chr7_random 254598 235 + 778964 TTTAAGCCAGGTTGGGCCTGGGAATAGTGGCAGCAAAAGCAGCAGC--------CAAATGTATA-----------------------CACTTC------------------------------------------------------------------------------------------------------AGATGTCTACAC-TCATGGGCACAG-------------GCATATTCCACACTTGCTGGAACACGA-----------------------------GATGCCTGAGAGGCACCTGTTTCC-CAGCTACTAACTGATGTC-CACACACCCCA-TTCACGTGTCTTCATTTAGGTTTCTGCATCGTATATTTGCTCAGCCAGTGCA-AACACATCTTCTAGGGG s panTro1.chrUn_random 63448130 235 + 240967748 TTTAAGCCAGGTTGGGCC-AGGAATAGTGGCAGCAAAAGCCGCAGC--------CAAATGTATA-----------------------CACGCC------------------------------------------------------------------------------------------------------AGATGTCTACAC-TCATGGGCACAG-------------GCATATTCCACACTTGCTGGAGCATGA-----------------------------GAGGCCTGAGAGGCACCTGTTTCC-CAGTTGCTAACTGATGTC-CGCACACCCCA-TTCACGTGTCTTCATTTAGGTCTCTGCATAGTATATTTGCTCAGCCAGTGCAGAACATATCTTCTGGGGG s mm5.chr11 47366223 300 - 121648857 TTTAAGCCAGGCTGGACCCAGGGGTAGTGGCAACAAAAGCAGCAGCCATAATGTCAAACATATAAATGACCTGAGAAATTGCATCTGCACGTCATCCACTCAGAACTGACTGGGCTATGTACATCAGGAAGGACGGAGCA-------------------------------------------------------AGACATCCACAG-GCATGGACACAC-------------ACA-----CACATCTGCTT-------------------------------------GATGCTGGGGAGGCACTTGCCCCCTCAGCTG-GAGCTGATGCC-TACACACTTTA-CTTTCGTGTCTTCAATTAGGCCTCTGCATTGAATATTCATTGAACCAGTGCA-AAACCATCTTTTAGGGG s rn3.chr10 48767898 295 - 110733352 CTTAAACCAGGCTGGACCCAAGGGTAGTAGCAACAAAAGCAGCAGCCATAATGTCAAACATAGA-----------------------AATGAC-----CTGAGAAAT----------------------------------------------------------------------------------------TGTTATCTGCACGTCATCCACTCAGAACTGACTGGGCTATATACATCAGGAAGGACGGAGCAAGACATCCACAGGCATGGACATACATCGGCTTGAGGCTGGGGAGGCACTTGCCCC--CAGCTG-GAGCTGATGCCTTACACACTTCATTTTTCTTGTCTTCAATTAGGCCTCTGCATTGAATATTCATTGAACCAGTGCA-AAACCATCTTTTAGGGG s canFam1.chr9 39342408 312 + 53642819 TTTAAGCCAAGTCAGGCCCTGGGGCAGTGGCAGCAAAAGCAGCAGCCATAACGTCAAACATACA-----------------------AATGAC-----CTGAGAAAT--------------------------CTCTTCATGTCATCCACTCAGAACCAAGGTGGGGCTATGTACAAGTCAGGAAGGACGGATCGAGACGCTCACAG-GCATGGACACAC-------------TCGCA---CACACCTGCTTGAAGATGGG----------------------------GAGGCCAGGGGGACACCTGCCCCC-CAGCTGGGGACTCACGCC-CACGCACTCCA-TTCATGTATCTTCAATTAGGCCTCTGCATCGTATATTCATTGAACCAGTGCA-AAAACATCTTTGGGGGG a score=814.0 s hg17.chr7_random 254833 11 + 778964 GCAACATTAAT s panTro1.chrUn_random 63448365 11 + 240967748 GCATCATTAAT a score=29248.0 s hg17.chr7_random 254844 93 + 778964 TGCAGCACCTGCCCCAC-TTGTTCTGGGAG-GGAGTCAAGAGGAATCTGGTCAGCTCCTAATCCCCCAGGACAAAGGTGATGC---------------------CCTCTTTTCAGG s panTro1.chrUn_random 63448376 93 + 240967748 TGCAGCACCTGCCCCAC-TTGTTCTGGGAG-GGAGTCAAGAGGAATCTGGTCAGCTCCTAATCCCCCAGGACAAAGGTGATGC---------------------CCTCTTTTCAGG s mm5.chr11 47368963 108 - 121648857 TGCAGCACCAGCCCGATGTTGTTCTGGGGG-AGAAGGAAGA--AACCAAGTCAGTTCCT----CCCCTGTACAAAGTCCATCC-ACGGTCTGGTCACCCACATTCTCCTCGCCAAC s rn3.chr10 48770467 108 - 110733352 TGCAGCACCAGCCCGATGTTGTTCTGGGGG-ATAAGGAAGA--AACTACGTCAGTTCCT---CCCCCTACACAAAGTCCATCCCACGGCCTGTTCACCTAGA--CTCCTCTCCAAT s canFam1.chr9 39344885 96 + 53642819 TGCAGCACCAGCCCAATGTTGTTCTGGGGGCAGCGGGAGGG--CCCCGGGTCAGTTCCG-CTTCCCCGGGATGAGGCTGCCCC---------GCCA--------CCCCTGCCCAGC a score=1365.0 s hg17.chr7_random 254937 1 + 778964 A s panTro1.chrUn_random 63448469 1 + 240967748 A s mm5.chr11 47369071 1 - 121648857 A s rn3.chr10 48770575 1 - 110733352 A s canFam1.chr9 39344981 1 + 53642819 A s fr1.chrUn 84933584 1 + 349519338 A a score=168959.0 s hg17.chr7_random 254938 171 + 778964 CTTACATCCAGCAGCGTCATCTCGGGATGGG-TTTTTCAAACACAAGCAGCATGAGGTAGCAAGCATGGTGTGACAGGCTCAGGGCCATGGGCAGCCGGCTTCTGGAGAAGCAGCACAGGG-CAGGCACATCTGTGGGTGGC-------ACCATGACAAGCCAAGA---CAGCCTCAGCCCGT s panTro1.chrUn_random 63448470 171 + 240967748 CTTACATCCAGCAGCGTCATCTCGGGATGGG-TTTTTCAAACACAAGCAGCATGAGGTAGCAAGCATGGTGTGACAGGCTCAGGGCCATGGGCAGCCGGCTGCTGGAGAAGCAGCACAGGG-CAGGCACATCTGTGGGTGGC-------ACCATGACAAGCCAAGA---CAGCCACAGCCCCT s mm5.chr11 47369072 173 - 121648857 CTCACATCCAACAATGCCATCTCAGGGTGATCCTCCCCAAACACAAGCAGCATGAGGTAGCGGGCACGGTACAGGAGGCTCAGGGCTGTGGACAGCTGGCTGCTGGCGAAGCAGTACAGGGCCAGGTGCATCTGTGGGTGGG-------GTCACGGTGGGTCAGGG---TAGCCTCAGGCACC s rn3.chr10 48770576 173 - 110733352 CTCACATCCAACAATGCCATCTCAGGATGGTCCTCCCCAAACACAAGCAGCATGAGGTAGCGGGCACGGTACAGGAGGCTCAGGGCTGTGGACAGCTGGCTGCTGGCAAAGCAGTAGAGGGCCAGGTGCATCTGTGGGTGGG-------GTCATGGTGGGTCAGGG---TAGCCTCGGGCACC s canFam1.chr9 39344982 181 + 53642819 CTCACGTCCAGCAGGGCCATCTCGGGGTGGTCTTCCCCAAACACGAGGAGGGTGAGGTAGCGGGCGCGGTACAGCAGGCTCAGTGCGGTGGACAGCTGGCTGCTGGCGAAGCAGTACAGGGCCAGGTGCATCTGCGGGGGGCGGGGGGAGCCACTTCAGGCCCAggccccggccccggcc--c s fr1.chrUn 84933585 166 + 349519338 CTCACATCTAACAGCGCCATCTCTGGGTGGTCCTCCCCACTAACCAGCAGCAAGAGGTAACGGGCTCGATACAAGAGTTTTAGGGCAGTTGATAGCTGGCCATTGGCAAAGCAGTATAGAGCCAAGTGCATCTGCAAA-----------GAAAAGATAAGCAGATG----AGTCTGGGGC--C s danRer1.chrUn 30548365 177 - 367113659 CTTACATCGAGCAGAGCCATTTCAGGATGGTCCTCTCCACAGACCACGAGCATGAGGTAGCGAGCACGATACAGCAGCTTCAGGGCAGTGGACAGCTGACCGTTAGCAAAGCAGTACAGTGCTAAGTGCATCTGCGGAAAACAAAC---ACAACATTTAGACATAA---CTGACACAGTTAGT a score=-2282.0 s hg17.chr7_random 255109 24 + 778964 AATCC-----CAACAGCTCCAG----CCCAG-AT s panTro1.chrUn_random 63448641 24 + 240967748 AATCC-----CAACAGCTCCAG----CCCAG-AT s mm5.chr11 47369245 25 - 121648857 TACAC-----CTACAAGCCAAC----CCCAGCCT s rn3.chr10 48770749 25 - 110733352 CACAC-----CTACACGCCAAC----CCCAGCAT s canFam1.chr9 39345163 25 + 53642819 gggcc-----ccAAGGCCCAGT----CCCCCCAC s fr1.chrUn 84933751 34 + 349519338 AACACGTAAGCTAAATGTTCATGTTATCTGGTGC a score=117475.0 s hg17.chr7_random 255133 95 + 778964 GGC-ATTCAAATTTTCCCGGATAGTATTGGGGTGCCCGATGCCCATCACTCGCCCTCTCATTAGCACGGCCT--TGTTGGTTACTCAGGGACTAAGGA- s panTro1.chrUn_random 63448665 95 + 240967748 GGC-ATTCAAATCTTCCCAGATAGTACTGGGGTACTCGATGCCCATCACTCGCCCTCCCATTAGCACGGCCT--TGTTGGTTACTCAGGGACTAAGGA- s mm5.chr11 47369270 98 - 121648857 GGCTACTCACATATTCCTGAATGGTGTTGGGGTGCTCAATGCCCATCACCCGCTCACTCATCAGCACGGCCTTCTGTTGATTGCTGAGGGCCTGGAAA- s rn3.chr10 48770774 98 - 110733352 GGCTACTCACATATTCCTGGATGGTGTTGGGGTGCTCAATGCCCACCACCCGCTCACTCATCAGCACAGCCTTCTGCTGATTACTGAGGGCCTGGAAA- s canFam1.chr9 39345188 97 + 53642819 GGCTACTTACATATTCCTGGATGGTGTTGGGGTGCTCGATGCCCATCACTCGCTCACTCATCAGCACTGCTTTCTGTTGGTTACTCAGGGCCT-GGGA- s fr1.chrUn 84933785 98 + 349519338 GATGACTTACATATTCTTGAATCGTGTTGGGGTGCTCAATGCCAAGGACCCGCTCACTCATCAGAACAGCCTTCTGTTGATTGCTAAGAGCCTGTGGA- s danRer1.chrNA 325115606 98 - 390413307 GAC-ACTTACATATTCTTGAATAGTATTGGGATGTTCAATACCCAGCACTCTCTCACTCATCAGCACAGCCTTCTGCTGGTTGCTCAGAGCCTTAAAAA a score=6790.0 s hg17.chr7_random 255228 7 + 778964 GAGAGAG s panTro1.chrUn_random 63448760 7 + 240967748 GAGGGGG s mm5.chr11 47369368 7 - 121648857 GAGATGG s rn3.chr10 48770872 7 - 110733352 GGGATAG s canFam1.chr9 39345285 7 + 53642819 GAGGTGG s fr1.chrUn 305341418 7 - 349519338 GACATGG s danRer1.chrNA 325115704 7 - 390413307 GAGAAGG a score=-12197.0 s hg17.chr7_random 255235 238 + 778964 TGGGGGATGTAGATCCAGGGTGGGCACTGCCTCACAGC----CAGAGTCCACCTGACTGCAGGCCAGCAAGCAAGCCCAAGCAGCTCAGCTCTAGTCACC--TCTGGCTGCAC----TTTTTATGTGTAATT-TACACAAAGGCAGCAAAAGGAGGTC--AACATTAGCTGTTGTGAC-ATGAAAGTCTATGCCCCATT--A--------AGACC-TTAAAATGCTATTGTCTTAAGCTATCTTTATTCTAATAAAATTTATA s panTro1.chrUn_random 63448767 238 + 240967748 TGGGGGATGTAGATCCAGGGTGGGCACCGCCTCACAGC----CAGAGTCTACCTGACTGCAGGCCAGCAAGCAAGCCCAAGCAGCTCAGCTGTAGTCACC--TCTGGCTGCAC----TTTTTATGTGTACTT-TACACAAAGGCAGCAAAAGGAGGTC--AACATTAGCTGTTGTGGC-ATGAAAGTCTATGCCCCATT--A--------AGACC-TTAAAATGCTATTGTCTTAAGCTCTCTTTATTCTAATAAAATTTATA s mm5.chr11 47369375 181 - 121648857 -------TATCCATCTCAGGTGAGCACTGCTCCCCAAC-----------------------------TGAGCAGCCCCACCCAGCACGG-GCTAGC-----------CTGCAG----TTTCTA----TCCTT-TGCACACAGGCAG---AAGG--------ATAATGGCTGCTTTGACTGAGGAGGTCTTCGCCACA----G--------AGACCATCCGAAACTTATCATTCTACATCTTCTT--CCCTAACAAAGCCTATG s rn3.chr10 48770879 182 - 110733352 -------TATCCATCTCAGGTGAGCACTGCTTCCCAAC----TGA-------------GCAGCCCCACCAGCA-------------TGG-GCTAGC-----------CTGCAA----CTTCTA----TCCTT-TGCACACAGGCAGCAAGATA--------ATAGCAGGGGCTGTGACTCTGGAGGTCTTGGCCACACT--G--------AGACCACCTGAAACTTACTGTTCTACA---TCTT--CCCTAAAGTCGTCTATG s canFam1.chr9 39345292 180 + 53642819 GGAAGCGT---CATCCCGGGTGGGTGCCTCCCCACATC------GAGTCCGCCTGGCC-----------------CCCGAGCAACTCAG-CCTCAT-----------------------------------------------CAGCAAAGGAGTGTTCAAAACTCACTTACGGTGAGCACGGAAGGCCATGCCCCACTCCG--------AGGCCTTTTTAAATAGCTTGTCTTGAGCC-TTTTACCCCTAACAAAATCTGTG s fr1.chrUn 305341425 251 - 349519338 GGGGATTCAAGAACCAGAAGTCTGTCAGAATTCTCAGATTCACTGATTTAGTCTGACATCAAGTGAAAAACCGCCAAAGGGCAACCCAGCACTGAACACTGGGCTGATCCCACATTATTTCTATGAATCTTCATGCAATAATCATGCATAAACATG----AGTAGT-GTTGCATTGGG-ATAAATATCT---CCCTATT--GTTTGGATCAGTTC-ATTACATTCTGTGAGTTCAAGCCCTGCACATGTAAATTTAATGCATA a score=-11658.0 s hg17.chr7_random 255473 253 + 778964 CAAATAAACACATAC---AAGGTGAACTACTAT-AAAGGAAATATTAGGA-TTTTTTAAACCCATAAACAGACATGTAAACAGTCACTGTTTGATT-GCAGAGAAAGTGAGCTTCTAAAGCA------------GCTGACCA-CAAAACAGCC------TCACCAAACCCCAGGCAGGCCAGGCA--------GTCTGAACACTACAAGGCCACGTGATGGTCACAGAGGATG---ACAGCTCCCGTGAGTATTGCAAGGC-----ACTGTGT--TAGCTTCTCACTCACAGTCTC s panTro1.chrUn_random 63449005 256 + 240967748 CAAATAAACACATAC---AAGCTGAACTACTATAAAAGGAAATATTAGGATTTTTTTAAATCCATAAACAGACATGAAAACAGTCACTGTTTGATTCGCAGAGAAAGTGAGCTTCTAAAGCA------------GCTGATCA-CAAAACAGCC------TCACCAAACCCCAGGCAGGCCAGGCA--------GTCTGAACACTACAAGGCCACATGATGGTCACAGAGGATG---ACAGCTCCCATGAGTATTCCAAGGC-----ACTGTTT--TAGCTTCTCACTCACAGTCTC s mm5.chr11 47369556 217 - 121648857 CAAA--------------------AACCAACATCTGAAAATGCATTAA---TTTTTAAAAAGCTTTCCTAG-------GACAGCCTCTGGTTG----AGAGAGCAGGGGG---CCCAAAGCATACCGAGAGCCTGAAGACCAGCAAAATAGCTGGAATGCCACAGAACACCAAAGAAAACAAG------------------------AGACCATCGGCTGGTC-----------------TTCCCATGGTCACTCAAAGGCCAGGTATTGTGTCGCAGC-TCTTACTCACTGGCTC s rn3.chr10 48771061 215 - 110733352 CAAAAACAAACAGATCTGAAACTTAAC-------TGAAAATGCATTCA---CTTCTAAAACACCTCCCT---------GACAGCCTCTGATTG----AGAGCCCA---GGGCCATCGAAATA------------GCTGG-AA-TAAAA-----------TCACACAACACTGAGGAAAACAAAAGAGACCTTTGGCTGGTCTTCCCACGGTCACTCAAAGGCCAGATATTGTGCC-ACAGCTCTTACA------------------ACTCTAT--TGCC---------ACCATCTC s canFam1.chr9 39345472 205 + 53642819 CAAAGATATATACAG---------ATCTAA----AAAGGGCACACGCAAA-T--------------------------AAGAGTCTAGGGTTGA---GGAGCAGAGACAGGCT------GCA------------CTTGCCCCGTGAAGCAC--------GGGCAAAGGCCCAGGCCAGGGAGGCA---------GGTGAACACCAGAAGGCCAAGGAGCACTTAGAGATGCTGCCAACAGCT-TCATGCAGCTCCG----------ACTCTGA--GAATCTATCCTTCCCAATGTG a score=0.0 s hg17.chr7_random 255726 7 + 778964 AGAATAC a score=307.0 s hg17.chr7_random 255726 7 + 778964 AGAATAC s panTro1.chrUn_random 63449261 7 + 240967748 AGAATAC s rn3.chr10 48771276 3 - 110733352 ----TGA a score=4149.0 s hg17.chr7_random 255733 25 + 778964 CCTGTGAGGGGAGGCCCCGTC-TCAC s panTro1.chrUn_random 63449268 25 + 240967748 CCTGTGAGGGGAGGCCCCGCC-TCAC s rn3.chr10 48771279 24 - 110733352 GCTGTCATGTCATG-CTCACC-TTAC s canFam1.chr9 39345677 25 + 53642819 CCTGCGAGGG-AGGCCCTGCCATCAC a score=91.0 s hg17.chr7_random 255758 1 + 778964 T s canFam1.chr9 39345702 1 + 53642819 T a score=91.0 s hg17.chr7_random 255758 1 + 778964 T s panTro1.chrUn_random 63449293 1 + 240967748 T a score=0.0 s hg17.chr7_random 255758 1 + 778964 T a score=20015.0 s hg17.chr7_random 255759 269 + 778964 -------AGAGCACAGGAGGTTCCTGAGCTCTTCCCAGAA---------AATGGTCATCAAACGATGGAGCAGGG---GGAAGCCCAGACAGAACAAGTGAGTCCCTAGGGTCTCCTTAACCTCCCTCAGCTCCTCCACATGGGTTC-CTGAGGGAAAGTGAGCAGTCTCCTAACCCCTT--TGTTAGGGTTCCAGTCCTGCAGGTCTGGACTCTCTCATTTTATGCTACCATAGGGGATGACAATGCAA-CCCCAGGC--TCCTTTTTTGCCATCCC--TCAATGCCAGGCCAGG s panTro1.chrUn_random 63449294 272 + 240967748 -------AGAGCACAGGAGGTTCCGGAGCTCTTCCCAAAA---------AATGGTCATCAAACGATGGAGCAGGG---GGAAGCCCAGACAGAACAAGTGAGTCCCTAGGGTCTCCTTAACCTCCCTCAGCTCCTCCACATGGGTCCTCTGAGGGAAAGTGAGCAGCCTCCTAACCCCTTGATGTTAGGGTTCCCGTCCTGCAGGTCTGGACTCTCTCATTTTATGCTACCATAGGGGGTGACAATGCAA-CCCCAGGC--TCCTTTTTTGCCATCCC--TCAATGCCAGGCCAGA s mm5.chr11 47369812 171 - 121648857 -------AGAGCACAGGCAGCTACTGAGTTCTCCCAAGGA---------CAGCAACAAGAGCTGATG--------------AGCTC--ACGGAACAAGAA----CTTTGGACCTCC-------------------CTACATGGA----------------------------AACCCATT-------------------------------CTCCCT-GTTTTA-------ACAGGGGGTGATGGTGGGGTCCCCAGACCTTTCTTTCATGCAGTCCCAACTAATACGTGAC---A s rn3.chr10 48771303 188 - 110733352 -------AGAGCACAGGTAGCTACTGAGCTCTTCCAAGGACAGCAAGTGAATGGTTGAGAGCTCATG------------------------GAACAAGAA----CTTTGGAGCTCTTGGGATGCCA---------CTACGTGGAAAC-CCAAGGGA----GAGCATTCTCCTGTTTTAAC----------------------------------------------------AAGGCAGTGATGGTGGGGCCCCCAGAC----CTTTCATGCAGCTCCAACTAATACATGAG---C s canFam1.chr9 39345703 264 + 53642819 CCGACTGTGTCCACAGCAGGGC----AGCTCTCCCAAGAA---------TATAACTACAGAGTTGCAGAGCAGGGGAAGAAAAGCCAGGCAGAATGAGCAGCTCCCCAGGGTCTCCCTGGTCTCTGGCTGTACCTCC-CAGGGGGCC-CCAAGGA-----GAGCAGCACCCTCGGCCCCA--CAGATGGGGTTCAGCTCCCCAGGCCTGGACTCCCGCTTCCTGCG-----GCATGGGGTGAGAACACAG-CCCCAGCT--CCCTCACTTGCCATCCC--CCAGTGCCAGGCCAGG a score=-85.0 s hg17.chr7_random 256028 44 + 778964 CCCAGA-GCCGTTTGCTGACACAGCCCAGGGGATGCTCAAGGCCC-- s panTro1.chrUn_random 63449566 44 + 240967748 CCCAGA-GCCCTTTGCTAACACTGCCCAGGGGATGCTCAAGGCCC-- s mm5.chr11 47369983 23 - 121648857 GCCAGA--------AGTGCCACAGCCTA--------------CAC-- s rn3.chr10 48771491 23 - 110733352 GCCAGA--------AGCGCCACAGCCAA--------------CGC-- s canFam1.chr9 39345967 44 + 53642819 CGCCAA-GGCCTCTGCTGACACAGCCCGGAGGGTGCTCAAGGCCC-- s danRer1.chrNA 325118905 36 - 390413307 -CCAAACGTTGTTTTCTGGCAT----------GTGTTTATGGGTCAT a score=171449.0 s hg17.chr7_random 256072 140 + 778964 ACCTCGGCACAG-TCACCTGTAGTGTACT-GAGATGAGCAAGGAGGTGCAAGTAGACACAAAT-CCCCATGGGCTTGGCCTC--AGCTA-TGTTCCACAGG-CTCAGGGCCTCGCAGAAGAGCTCACAGCCCTCCTTCAGGAAGCCT s panTro1.chrUn_random 63449610 143 + 240967748 ACCTTGACACAGTTCACCTGTAGTGTACT-GAGATGAGCAAGGAGGTGCAAGTAGACACAAATCCCCCATGGGCTTGGCCTC--AGGCA-TGTTCCACAGGACTCAGGGCCTCGCTGATGAGCTCACAGCCCTCCTTCAGGAATCCT s mm5.chr11 47370006 144 - 121648857 ACCTCAGCATAA-TCACCCATGATGTAGTGGAGGCGGGCCAGAAGACGCAGACAGGCACAGAT-CTCCACGTGCATGGCTCCGTAGACATTGTTGAACAGG-TTCAGAGCCTCGTTGATGAGCTCACAGCCCTCTTTCAGGAAGCCT s rn3.chr10 48771514 144 - 110733352 ACCTCAGCATAA-TCCCCCATGATGTAGTGGAGGCGGGCCAGAAGCCGCAAACAGGCACAGAT-CTCCACATGCATGGCTCCATAGACATTGTTGAACAGG-TTCAGAGCCTCGTTGATGAGCTCACAGCCTTCCTTCAGGAAGCCT s canFam1.chr9 39346011 144 + 53642819 ACCTCGGCATAG-TCACCCATAATGTAGTGGAGACGAGCAAGGAGGCGCAAGCAGGCGCAGAT-CTCCACGTGCATGGCTCCGTACACGTTGTTAAACAGG-TTCAGGGCCTCATTGATGAGCTCACAGCCCTCCTTCAGGAAGCCT s fr1.chrUn 84933955 144 + 349519338 ACCTCAGGGTGG-TCTCCCATGATGTAATTAAGACGTGCCAGGAGGCGCAGACAGGCACAAAT-CTCTACGTGCATTGCACCATACACATTGTTGAAGAGA-TTTAGAGCCTCATTTATCAGCTCACAACCCTCCTTCAGAAAACCT s danRer1.chrNA 325118941 144 - 390413307 ACCTCTGGGTGA-TCGCCCATGATGTAGTTGAGTCGAGCCAGAAGACGCAGGCAGGCACAGAT-CTCCACATGCATGGCTCCATACACATTGTTGAAGAGG-TTCAAGGCCTCGTTGATGAGCTCACAACCCTCTTTTAGAAAGCCT a score=-798.0 s hg17.chr7_random 256212 5 + 778964 --GCAGA s panTro1.chrUn_random 63449753 5 + 240967748 --GCAGA s mm5.chr11 47372304 5 - 121648857 --GCAGA s rn3.chr10 48771658 3 - 110733352 ----AAG s canFam1.chr9 39346155 5 + 53642819 --GCAGG s fr1.chrUn 84934099 5 + 349519338 --GAAAA s danRer1.chrNA 325119085 5 - 390413307 GCGCA-- a score=-4786.0 s hg17.chr7_random 256217 48 + 778964 TCACACCCTCAGG-GAGCAGTGCTCAGATGAGCAG-------GCAGGCCCCACATC s panTro1.chrUn_random 63449758 48 + 240967748 TCACACCCTCAGG-GAGCAGTGCTCAGATGAGCAG-------GCAGGCCCCACATC s mm5.chr11 47372309 40 - 121648857 TGACATC--AGGG-GAGAAGCTTTCTGCT--GCTG-------AAGAGCCCAA---- s rn3.chr10 48771661 48 - 110733352 AGGCAGCCAGGGT-GGCAAGGTCAGGGCTGGGCAA-------GAGACACTCCCATT s canFam1.chr9 39346160 49 + 53642819 GCACCCCCAAGGGTGGCAAGGTCAGGGCTGGGCCA-------GGGGACACCCCTCC s danRer1.chrNA 325119090 48 - 390413307 -------CCAAGG-ACGCATCAATCAGCTCTGCAAAAACGTTGAAGGTGTCAAAGC a score=0.0 s hg17.chr7_random 256265 5 + 778964 CCCCA a score=-282.0 s hg17.chr7_random 256265 1 + 778964 C s panTro1.chrUn_random 63449806 1 + 240967748 C s mm5.chr11 47372349 1 - 121648857 G s rn3.chr10 48771709 1 - 110733352 T s canFam1.chr9 39346209 1 + 53642819 C a score=2334.0 s hg17.chr7_random 256266 4 + 778964 ------CCCA s panTro1.chrUn_random 63449807 4 + 240967748 ------CCCA s mm5.chr11 47372350 4 - 121648857 ------CCCA s rn3.chr10 48773781 4 - 110733352 ------CCCA s canFam1.chr9 39346210 10 + 53642819 CCCAGCCACA a score=7252.0 s hg17.chr7_random 256270 25 + 778964 CCCCATGACG--CTCTGTT----CCACTTTG s panTro1.chrUn_random 63449811 25 + 240967748 CCCCATGAAG--CTCTGAT----CTACTTTG s mm5.chr11 47372354 25 - 121648857 TCCCATGATG--CTTTGCC----CTCAGTTG s rn3.chr10 48773785 25 - 110733352 TCCCATGATG--CTCCGCC----CACAGTTG s canFam1.chr9 39346220 27 + 53642819 CCTGGTCACGCACCCTGCT----GTACTTTG s danRer1.chrNA 325119138 29 - 390413307 ACCGATGATC--ATTTGTTTTTGTTACCTTG a score=-2179.0 s hg17.chr7_random 256295 29 + 778964 CAGGCTTC-TGCATTGG----CCAGTC---CCCACTG s panTro1.chrUn_random 63449836 29 + 240967748 CAGGCTTC-TGCATTGG----TCAGTC---CCCACTG s mm5.chr11 47372379 30 - 121648857 CAGGGTTCACTCACTGA----TTATCC---ATTCTTA s rn3.chr10 48773810 33 - 110733352 CGGGTTCA-CTCACTGAGTATCCATCC---ATTCTTA s canFam1.chr9 39348623 27 + 53642819 CAGTCTTC------TGT----CCACCCCAACCCAAAA s danRer1.chrNA 325119167 24 - 390413307 -----CTG-AACCTTGG----CCTGTC---CGCTCTG a score=0.0 s hg17.chr7_random 256324 6 + 778964 CTTTCT a score=745.0 s hg17.chr7_random 256324 4 + 778964 CTT-T s panTro1.chrUn_random 63449865 4 + 240967748 CTT-T s mm5.chr11 47372409 5 - 121648857 CTTGC s rn3.chr10 48773843 5 - 110733352 CTTGC s canFam1.chr9 39348650 5 + 53642819 CTTGC a score=2865.0 s hg17.chr7_random 256328 2 + 778964 CT s panTro1.chrUn_random 63449869 2 + 240967748 CT s mm5.chr11 47372414 2 - 121648857 CT s rn3.chr10 48773848 2 - 110733352 CT s canFam1.chr9 39348655 2 + 53642819 CT s fr1.chrUn 84935926 2 + 349519338 CT a score=85652.0 s hg17.chr7_random 256330 105 + 778964 GGTG---AGATGTCCGAGTTGAAGTGAGTGTTGAATGCCACACAGCTGATGGAGCTCACTGCCTTGCACATGTTGTAAAACACCTCCTGGTTACAAGGGTCAGC-TGTG s panTro1.chrUn_random 63449871 105 + 240967748 GGTG---AGATGTCCGAGTTGAAGTGAATGTTGAATGCCACACAGCTGATGGGGCTCACTGCCTTGCACATGTCGTAAAACACCTCCTGGCTCCAAGGGTCAGC-TGTG s mm5.chr11 47372416 108 - 121648857 GGGGAGAAGATGTCAGGATTGAAGCGAATATCAAAGGCCGTGCTGCTGATGGAGCCAACAGCCTTGCAGGCATTTCGGATCACCTCTCGGCTTCGAGGGTCTAC-TGTG s rn3.chr10 48773850 108 - 110733352 GGAGAGAAGATGTCAGGATTGAAGCGAATATCAAAGGCTGTGCTGCTGACAGAGCCAACAGCCTTGCAGGCGTTTTGGATCACCTCTCGGCTTCGAGGGTCTAC-TGTG s canFam1.chr9 39348657 108 + 53642819 GGTGAGAAGATGTCAGGGTTGAAGCGAACGTCAAAGGCTGTGCTGCTGATGGAGCCAACTGCCTTGCATGCGTTGCGTATCACCTCCCTGCTCCGAGGGTCTGC-TGTG s fr1.chrUn 84935928 108 + 349519338 GGAGAGAATATGTCTGGGTTGAAGCGGATGTCGAAACATGTGTTGCTGATGGAACCCACTGCCTTGCATGCATTCAGGACCACCTCTTGACTTTTGGCGTCTGT-TGTG s danRer1.chrNA 325119191 93 - 390413307 -----GAAGA------AATGGAAG---GCATCTGAGGCTTTGGGGTTGACGTGCTTCACAACAGGGAAAATGTTCAGGATGTCCTCCTCGGT--GAAGGCTGGCTTGTG a score=4441.0 s hg17.chr7_random 256435 5 + 778964 GAGAC s panTro1.chrUn_random 63449976 5 + 240967748 GAGAC s mm5.chr11 47372524 5 - 121648857 GAGAC s rn3.chr10 48773958 5 - 110733352 GGGAT s canFam1.chr9 39348765 5 + 53642819 GAGAC s danRer1.chrNA 325119284 5 - 390413307 GCGGC a score=35366.0 s hg17.chr7_random 256440 216 + 778964 ACAGCTTGATGGGAGGTAGGCCCACTCCACCAT-----CAGTAGTGCTGGGTTGCCCTGATCTGCACCTTCCAGATACTTGCTGAGATATCTGCATGCTTCTCTAAGGGACTGGGTCACGAGA----------CACCCCTGGCAAGGACCAGCTGGCAGAACAGGC-TGGACACTCTCCTTCAGC---CTCCCCAGCAGCCCTACCTGTGCTGTCATCTGTGCTGATGATCTCCG s panTro1.chrUn_random 63449981 217 + 240967748 ACAGCTTGATGGGAGGTAGGCCCACTCCACCGT-----CAGTGGTGCTGGGTTGCCCTGATCTGCACCTTCCAGGTCCTTGCTGAGGTATCTGCATGCTTCTCTAAGGGACTGGGTCATGAGA----------CACCCCTGGCAAGGACCAGCTGGCAGAACAGGC-TGGACACTCTCCTTCAGC--TCTCCCCAGCAGCCCTGCCTGTGCTGTCATCTGTGCTGATGATCTCCG s mm5.chr11 47372529 197 - 121648857 A---------GGCGGGCAAG-------GATGGT-----AGGTAGAGCTGTG-CACCGTGAGCCTC-TCACCCAACCCACTCTAGGGATATCTGCCTGCCTCTCTCAGAGA-----TCATGACACCACCACCCCCACCCCC--CATGGCTAAGCTGCCAGGACCAGCTTGGGCTCTCCAAACAAGC--------AAGGAACCCCACCTGTGCCATCATCTGAGGCGATGGTCTCTG s rn3.chr10 48773963 154 - 110733352 G---------TGAGGATAGG------------------AGGTAGAGTTGTGCTGCTATGAGCCTC--TTGCCCACCCGCTCTAGGGATGTCTGCCTGCCCCTC--AGAGA-----TC-TGTGA-----------------------GCTAAACTGCCACAACCAAA-CAAGCA--------------------CAGCAGCCCCACCTGTGCCATCGTCTGAGGCGATGGTCTCTG s canFam1.chr9 39348770 203 + 53642819 AAGGTCGGCTGGGACGCAGCTCCCCTCCCCCATCAGGGGGGTGGGGCTGCGCTACCCTGAGCCTC----CCCAGCTCCATTTGGGGACACCTGCCGGCCTCCCTCAGG--CTAGGTCAAGCCA-------------------------TCAGCTACAGGGACAGCA-CTGGAGCTCCGCCCTCCCCACATCCACAGCAGCCCCACCTGTCCCGTCGTCAGAGGCGATGGTCTCTG a score=13023.0 s hg17.chr7_random 256656 146 + 778964 TGGTAAGATTATGGGAAACTTTTACAGCAAGTTTTCCTTTCTCACTTCCCTATCTTAATAACAGCACTGATAACTTTTAAGCCCTAGAAAGCTGGAACTGCAAGACACATGATCTTCTGCCTTAGAAGGTCCATGTTTGGGCAGTG s panTro1.chrUn_random 63450198 146 + 240967748 TGGTAAGATTACGGGAAACTTTTACAGCAAGTTTTCCTTTCTCACTTCCCTATCTTAATAACAGCACTGATAACTTTTAAGCCCTAGCAAGCTGAAACTGTAAGACACATGATCTTCTGCCTTAGAAGGGCCATGTTTGGGCAGTG a score=19605.0 s hg17.chr7_random 256802 185 + 778964 TGTGCCCAGGTGAGAGCCCCATGGTTGTTAGTGGAA-GCCGGGAGCTGGATGGGCCTGGCCCCATAGCCTAGTGAAAAGTGGG-------ACCCTCTCCTT----CCAGAGCATGGAAGTCTCAGAG--GCTGGAAAAAGGTGCCTGAGTGGCCTGCCAAAAAGCATAAGGCTAGAAGGGCTGGAAGGAACCCCAACAG s panTro1.chrUn_random 63450344 185 + 240967748 TGTGCCCAGGTGAGAGCCCCATGGTTGTTAGTGGCA-GCGGGGAGTTGGATGGGCCTGGCCCCATAGCCTAGTGAAAAGTGGG-------ACCCTCTTCTT----CCAGAGCATGGAAGTCTCAGAG--GCTGGAAAAAGGTGCCTGAGTGGCCTGCCAAAAAGCATAAGGCTAGAAGGCCTGGAAGGAGCCCCAACAG s canFam1.chr9 39351448 172 + 53642819 TGTGCCCAGGCAAGGTCCCAATGGCAGACAGTGGTAGGTGGGAAGCCGGAAGAAACCTGTCACACAGTCCACAATGGAGGAGGTCCCCCCACCCTCCACCTAGCCCCAGGAC-TCCAAGTCTCAGAGGAGTCACAAAACAGAGCTGAGATAGTGTGCCCAGAGGTG--------------------------CCGATGC a score=9456.0 s hg17.chr7_random 256987 110 + 778964 TCTTCAAGGTGCCTGAGAGGGCTGGGCTCATTCCAGCTTTCTTTGCTTTCATCCTGATAGCAAGAAAACCTGCTCACACATGGCAGGCGGGCCTGAGGCTACCATTCCCT s panTro1.chrUn_random 63450529 110 + 240967748 TCTTCAAGGTGCCTGAGAGGGCTGGGCTCATTCCAGCTTTCTTTGCTTTCATCCTGTTAGCAAGAAAACCTGCTCACAGATGGCAGGCGGGTCTGAGGCTGCCATTCCCT s rn3.chr10 48777444 97 - 110733352 TCTCCAGTGTTGCCAACAAAGGTAGGCTAGTGCCAGC---CTCTGGTTTTCTCTT--TACCCACAAGCCCAG--------TAACAGGGAGGCTTAAGGCTGCAGTCACCT s canFam1.chr9 39351620 64 + 53642819 CCCGCAGGGTA-----------------------------CTGTGGC----------CAGCAA-------TGTTGGCAGGAGGCAAGCATGCCTGGGGCTACCAGTCAGG a score=1329.0 s hg17.chr7_random 257097 7 + 778964 CATCAGG s panTro1.chrUn_random 63450639 7 + 240967748 CATCAGG s canFam1.chr9 39351684 7 + 53642819 CATAAAG a score=1199.0 s hg17.chr7_random 257097 20 + 778964 CATCAGGGGCTATAGGCACT s canFam1.chr9 39351684 20 + 53642819 CATAAAGAGCCATAGGCACC a score=3156.0 s hg17.chr7_random 257104 13 + 778964 GGCTATAGGCA-CT s panTro1.chrUn_random 63450646 14 + 240967748 GGCTATAGGCACCT s mm5.chr11 47375534 14 - 121648857 GGCTGTAGTCACCT s canFam1.chr9 39351691 13 + 53642819 AGCCATAGGCACC- a score=112175.0 s hg17.chr7_random 257117 277 + 778964 -TTAATGTGGCTCTTTCTTGAAGCAGCTGCTCAGGCCGGTTCTCGAAGAGAAGTTCCCTCATTATCCACAGGTTCTTGTTCCAGCCCCGTGTCTGCAGAGGGACTAGGGAGGGAGAAAATCTCTCAGCCTGT-GCCCCACAACCTGCTCTGAGATAT-CTCTTTTGTTACTTCCTCACGGACAGCATC--AAACTTCC-AAATGAACAGACCAGCATG-------GAGCCT-CCAGAAAAGTGCACAGAATTCTGTCTAGTACCCAG--ATGGAAGG-----GGGTTCCCAGTGAGGG s panTro1.chrUn_random 63450660 279 + 240967748 -TTAATGTGGCTCTTTCTTGAAGCAGCTGCTCAGGCAGGTTCTCGAAGAGAAGTTCCCTCATTATCCACAGGTCCTTGTTCCAGCCCCATGTCTGCAGAGGGACTAGGGAGGGAGAAAATCGCTCAGCCTGT-GCCCCACAACCTGCTCTGAGATAT-CTCTTTTGTTACTTCCTCACGGACAGCATC--AAACTTCCAAAATCAACAGACCAGCATG-------GAGCCTCCCAGAAAAGTGCACAGAATTCTGTCTAGTACCCAG--ATGGAAGG-----GGGTTCCCAGTGAGGG s mm5.chr11 47375548 239 - 121648857 -TGAATATGGCTCGTTCTCGGAGCAACCGCTCAGGCAGGTTCTTGCGGGGCAGCTCCCTTGTTGTCTGCAGCTCTTCATTCCAGTCCCGGGTCTGTGGAGGGACCAGGGAGGCAGAGGCAGGCTCAGCCTAT-GTCTGCTGACCTGCTCTGGGTTATCCCCTTCTTCCACTTCCCTGTGGATAG--------GCCCCT-------AGAGAACAG-AGG-------GAGCCT-ACTGGGAGGTGCATATGAGCCTGG---------------------------------CAGGAAGGG s rn3.chr10 48777541 236 - 110733352 -TGAAAATGGCTCTTTCTCGAAGCAATCGCTCAGGCAGGTTCTTGCGGGGCAGCTCCCTTGTTGTCTGCAGCTCTTCATTCCAGTCCCGGGTCTGTGGAGGGACCAGGGAGGCAGAGGCAGGCTCAGCCTGT-GTCTCCTGACCTGCTCTGGGCTATCCCCTTCTTCCACTTCCCTGTGGATAG---------GCCCT-------AGAGATCAG-AGG-------GAGCCT-ATTGGGAGGTGCATAG-AGCCTGG---------------------------------CAG-AAGGG s canFam1.chr9 39351704 294 + 53642819 TTGAATATAGCTCTTTCTCGAAGCAGCCTCTCAGGCAGGTTCTTGCGGGGCAGTTCCCTCGTCGTCTGCAGCTCCTCGTTCCAGTCCCGGGTCTGCAAAGGGACCAGGGAGGGGCATGCCAGCTTGGCCCATGGCCCCAAGACCTGCTCTGGGCCAT-CCCTCCCTCTACCTCCCTATGGACAGCCTCCAAAGCTCCC-AAGTAAACAAGACAG-ATAAATAGATAAGCTT-CCAGGGAGGCGCACAGATCCCAGCCCGGCACCCAGCAAGGGAGGGCGAGAGAGGTGCCAGGGAGGG a score=6319.0 s hg17.chr7_random 257394 18 + 778964 CAGGGCCA--GGCTGCATGC s panTro1.chrUn_random 63450939 18 + 240967748 CAGGGCCA--GGCTGCATGC s mm5.chr11 47375787 14 - 121648857 CGGGTCTG--GGT----AGC s rn3.chr10 48777777 14 - 110733352 CGGGTCTG--GGT----AGC s canFam1.chr9 39351998 18 + 53642819 CAGGGCCA--GGCTGCAGGC s fr1.chrUn 84938317 20 + 349519338 CAGGTTCAGCGGCAGCAGGT a score=192544.0 s hg17.chr7_random 257412 158 + 778964 ACCTCTTCAGGAATGTTCTCCTCATTGTCCAACTTCAAGGTGT--GCATCCTCTGTGTGTATGCAGTCCATGGCAGGCTCTGCCTGGGGAACCGTCCAGCTGAACACCTGCAATGTGGTGGTGACCCTCTTGAATGAGTGGTTGTGGGCCCCATGGCAGT- s panTro1.chrUn_random 63450957 158 + 240967748 ACCTCTTCAGGAATGTTCTCCTCATGGTCCAACTTCAAGGTGT--GCATCCTCTGTGTGCATGCAGTCCATGGCAGGCTTTGCCTGGGGAACCGTCCAGCTGCACACCTGCAGTGTGGTGGTGACCCTCTTGAATGATTGGTTGTGGGCCCCATGGCAGT- s mm5.chr11 47375801 160 - 121648857 ACCTGTCCAGGAATGTGCTCCTCGTAGCCCAGCCTCGAGGTGTAGGCGTCCTCCGCACGCACACAGTCCATGGCATGCTCTGCCTGGGGGGCTGTCCAGCTGTATACCTGGAACGGGGTGGCGATCCTCTCGAATGGGTGGCGCTGGACCCTGTGGCAGG- s rn3.chr10 48777791 160 - 110733352 ACCTGTCCAGGAATGTGCTCCTCGTAGCCCAGCCTTGAGGTGTAGGCGTCCTCAGCACGCACACAGTCCATGGCATGCTCCGCCTGGGGGGCTGTCCAGCTGTATACCTGGAACGGGGTGGCGATCCTCTCGAACGGGTGGCGCTGGACCCTGTGGCAGG- s canFam1.chr9 39352016 159 + 53642819 ACCTGTCCAGGAATGTGCTCCTCATAGCCCAGCCTCGAGGTGTAGGCATCCTCCGCACGCACACAGTCCATGGCATGCTCCGCCTGGGGGGCTGTCCAGCTGTACACCTGGAACGGGGTGGCAATCCTCTCGAATGGGTGGCGCTGGACCCTGTGGCAG-- s fr1.chrUn 84938337 160 + 349519338 ACCTGTCCAGGTATGTGTTCCTCGTAGCCTAAACGGGAGGTGTAGGCATCTTCGGCCCGAACACAGTCCATGGCGTGGTCTACCTGTGGAGCTGTCCAACTGTACACCTGGAAAGGTGTTGCTATCCTTTCAAAGGGGTGTCGCTGAACTCTGCAACAAT- s danRer1.chr15 4864412 161 - 23217395 ACTTGGCCAGGTATGTGCTCCTCATAACCCAGTCGGGAGGTGTAGGCGTCCTCCGCTCTCACACAGTCCATAGCATGATCAATCAGTGGTGCAGTCCAGCTGTACACTTGAAAGGGAGTGGCTATTCTCTCAAATGGATGCCTCTGAACCCTAATGAAAAT a score=2380.0 s hg17.chr7_random 257570 7 + 778964 CATCAGA s panTro1.chrUn_random 63451115 7 + 240967748 CATCAGA s mm5.chr11 47375961 7 - 121648857 CAGGGGA s rn3.chr10 48777951 7 - 110733352 CAGGGGA s canFam1.chr9 39352175 5 + 53642819 --CGAGA s danRer1.chr15 4864573 7 - 23217395 TACCAAA a score=107546.0 s hg17.chr7_random 257577 428 + 778964 GAGGGA--GATGCTTAGCCCACCAAGCCGAGAGCCCTGCCACAGC-----CTTCTGTGAGGCCTCCATCTGCTCTGGGTTCT--TGCCCTGAAAGGCTGTCCTGAAGTCAAACAGAAGAAGGTGGGCCTCTCTTCCAGGGCTGCTCTTTATCCCACTGACAGCTCCCTAG----AGGGCGACTAAGACAGCGGGG-ACAGATTCCTCAGGCAGAAGGACTGGAGTTTAGGCTGACGGGTTCATTCCATACCCCCACATGAGATGACACAAGGCAGGGGCTG----TGGGACAAAGGCATTGCCTTTCCTTC-------------------------------------------------TGGGATGA----------------------GGAATGGCATAGGAGACAGGGTATGGTGGGGCTGGGGTTG-AGCGATGGGCT---------------------TCACTGAGTAAGTGTCCTGGTTATCTGTCCACAGACCCAGAACAAGTGG-CATCCCAGGAGCCTGGGAGGGGCT--GGC s panTro1.chrUn_random 63451122 429 + 240967748 GAGGGA--GATGCTTATTCCACCAAGCCCAGAGCCCTGCCACAGG-----CTTCTCTGAGGCCTCCACCTGCTCTGGGTTCT--TGCCCGGAAAGGCTGTCCTGAAGTCAAACAGAAGAAGGTGGGCCTCTCTTCCAGGGCTGCTCTCTGTCCCACTGACAGCTCCCTAG----AGGGCGACTCAGACAGCGGGG-ACAGATTCCTCAGGCAGAAGGACTGGAGTTTAGGCTGACCGGTTAATTCCATACCCCCACATGACATGACACAAGGCAGGGGCTG----TGTGACAAAGGCATTGCCTTTCCTTC-------------------------------------------------TGGGATGA---------------------GGGAATGGCTTAGGAAACAGGGTATGGTGGGGCTGGGGTTG-AGCGATGGGCT---------------------TCACTGAGTAAGTGTCCTGGTTATCTGTCCACAGACCCAGAACAAGTGG-CATCCCAGGAGCCTGGGAGGGGCT--GGC s mm5.chr11 47375968 476 - 121648857 ATGGAAAGGTGGAACACCCCTCCAAGCTTAGAGCCTAGTTGTGAGTGTCTCTTCTCTGAGGCCCTCA-CTGTTCTGGCATCTCCTACCCATGGATGCCAACCAGAAGTCAAATAG-AGCAAATGGGCACCTCTCCCAAGGCTGTT----------------GCCCCCTTGGACTAGGGACTCTCAGGCACTGGGACACCATTTCTTCAGGCAGAGGTGCT---------GCTGTGGGGTCCAGCC----------TGTGACTGGAGGCAGGGCAGGGCATG-----GTGGCAGAGGCGCTACCTTTTCTTCTGCAGCACAGCAAAGTTCTTT--------------------TTGAAGGTTGGGCTGATCTGGTTGAGCAGCTCTACTAGGGAATGGCTGAGGAAGCGGGGGCTGGCAGGCTTGGGGTTGAAGTGGTAGGCCGTGGACCTGTAAGGAGA-GGGTCACAAAGCAGGTGCCGTAAGTATTTGTCATTAGACTCAGAACACGGGGACACGCCATG-GCACGTGGAAGACT--AGG s rn3.chr10 48777958 460 - 110733352 ATGGGAAGGTGGGACACCCCTCCAAGTTTAGTGCCCAGGTGTGACCTCCTCTTCTCTGAGGCCCTCA-CTGTTCTGGCATCTCCTACCCATAGATGCCAACCAAA------------------GGGCATCTCTCCCAGGGCTGTT----------------GCCCCCTTGAACCAGGTATTCTCAGGCACAGGGACACCATTTCTTCAGGCAGAGATGCT---------GGTGTGGGGTCCAGCC----------TGTGACTGGAGGCAGGGCAGGGCACG-----GTGGCAAAGGTGCTACCTTTTCTTCTGCAGCACAGC----------AAAGTTCTTT----------TTGAAGGTTGGGCTGATCTGGTTGAGCAGCTCTACTAGAGAATGGCTAAGGAAGCGGGGGCTGGCAGGCTTGGGGTTGAAGTGGTAGGCTGTGGACCTGCAAGGAGAGGGGTCACTAAGCAGGTGCCCTAAGTATCTATCATTAGACTCAGAACACGGGGACACGCCAGG-GCACGTGGAGGACG--AGC s canFam1.chr9 39352180 469 + 53642819 GGGGGA--GATGGAGAAACTGCCAAGCTCAGAGCCCTGCCCTGGG--CCCCTGCCCTAAAGCACCAACCAGCTCTCATGTCT--T-CCCACCGAGACCCTGGAGA-GGCGAGCAGAAGCAAATGGGCACGTCTTCTAGGACTGCC------CTAAAGGGAGGCTCT--------GGGGTGCTGGGGGCTGAAGGC-ATGGCTTCTTAGGGCAGACGTGAAGAAGTTCAGGCTGGCATGTTCACCC---ACCCTCTTGTG---GGACGTGAGACAAGGGGTGGAGATGTTGCAAAGGCTCTACCTTTTCTTCTGTAGCACAGC--------------------AAAGTTTTTTTTGAAGGTTGGGCTGATCTGGTTGAGCAGCTCCACCAGGGAATGGCTAAGGAAGCGAGGGCTGGCAGGCTTGGGATTGAAGTGATACGCTGTGGACCT-------------GAGGGGAGAGGGTGGTCACGGCACAGGGCACC----------CAAGTAG-CGGCCTAAAGACCTGAAATGGGCTCACAC a score=268531.0 s hg17.chr7_random 258005 550 + 778964 AGAGACTTACTGGTTCCAGCAAAAGCCCAT-GTGGATGCAGCAATGCTG-CCTGCTGGTCCTTGGCTGTAATTACAAACAGGTACTTGAGGTCCCCATGCATCTTGCAGCTCTCAGAGAGTGTGTTCCAGCTGCTCATGGTAGGCACTTTTAGTCACTGAACGTGCTTCA--GGA--------ATGGCCAAGCTTGA--TTAAGCCAGGCGTCTTGC-TGTGAGACCCTCCACCCA----ACTG-----------------------AGGACCCTCTTCCTTGTTCC-CCCTGGCAGTTTCACCTTCCAGTTCTGGTTCT---------AGAGACACGATGGCCCCTCTTGGGCCCCTGGGAGAATGTGCTCAGGTGACACACTGTCGACAGGGCCCATTTCCAAGCC---ATTCTTCCATTTCCCACTGTTTGAGGGGCTGAGGCC--GGTGATCAGCACAGGGCCACCCAGGGCCAGCTGTCTGCACCTAAACATCATGCTGGTCTGGATGTCTCAGGGCCAGAACTCTCCAGGTGAGATGGCCTGGTCCTCAGCACCTGGCCTCCGTGCTCCTTTTTCCTCTGTTCAA-TCCTGGCCCCAATGCC s panTro1.chrUn_random 63451551 553 + 240967748 AGAGACTTACTGGTTCCAGCAAAAGCCCAT-GTGGATGCAGTAATGCTG-CTTGCTGGTCCTTGGCTGTAATTACAAACAGGTACTTGAGGTCCCCATGCATCTTGCAGCTCTCAGGGAGTGGGTTCCAGCTGCTCATGGTAGGCACTTTTAGTCACTGAACGTGCTTCAGGGGA--------ATGGCCAAGCTTGA--TTAAGCCAGGCGTCTTGCTTGTGAGACCCTCCACCCA----ACTG-----------------------AGGACACTCTTCCTTGTTCC-CCCTGGCAGTTTCACCTTCCAGTTCTGGTTCT---------AGAGACACGATGGCCCCTCTTGGGCCCCTGGGAGAATGTACTCAGGTGACACACTGTCGACAGTGCCCATTTCCAAGCC---ATTCTTCCATTTCCCACTGTTTGAGGGGCCGAGGCC--GGTGATCAGCACAGCGCCACCCAGGGCCAGGTGTCTGCACCTAAATGTCATGCTGGTCTGGATGTCTCAGGGCCAGAACTCTCCTGGTGAGATGGCCTGGTCCTCAGCACCTGGCCTCCATGCTCCTTTTTCCTCTGTTCAA-TCCTGGCCCCAATGCC s mm5.chr11 47376444 521 - 121648857 AAAGACTTACTGATTCAGGTAGAAGCCCCTCGTCGATGCAGTGATGCTGACTTGCCGGTCCTCAGCAGTGATCACAAACAGGTACATGAGGTCCCCATGCATCTTGCGGTTCCCAGGAGGTGGGTTCCAGCCACTCATGGTAAGTACTTTCAGACACTGCAGGGGCTGCA--CAA--------ATGGCCAAACATGA--GGAGACAGGACT-------TTTGGGATCCTCCCACCA-------------------------------GGGTCTTACTTCCTTGATGC-TTCTAA-AGTCTTACCTTCCAGTCACGGTTCTGGGGCTGCAGGGGACAGAGAGGCCGCTCCCGGCTCCCCGGCAGGATATACTCAGGTGGGGTGCAGTCGATGGGGTCCATCTCCAAGCC---TTTCTTCCGCTTCCCACTGTCTGAGGAACCCAAGGCTTGGTGGTCAGCCAGGAACCAACTA--------TTTCTGTTACTTAATGTATCTCTGGCT----TGTCTTAACTTCAG--------------------CAAACCCCCAGCCCCCAGCCCTTCAGGCCTTTGTCCCTCTGCACAAGTCCAAGTGCCAATTTT s rn3.chr10 48778418 512 - 110733352 AGAGACTTACTGATTCAAGTAGAAGCCCCGTGTGGACGCAGTGACGCTCACTTGCCGGTCCTCAGCAGTGATCACAAACAGGTACATGAGGTCCCCATGCATCTTGCGGTTCCCAGGAGGGGGGTTCCAGCCACTCATGGTGAGCACTTTCAGACACTGCAGGGGCTGCA--CAA--------ATGGCCAAACATGA--GGAGACAGGACT-------TTTGGGATCTTCCCACCA-------------------------------GGG----TCTTCCTTGATGC-TTCTAA-AGTCTTACCTTCCAGTCACGGTTCTGGGGCTGCAGGGGACACAGAGGCCGCTCCCGGCTCCCTGGCAGGATATACTCAGGTGGTGTGCAGTCGATGGGATCCATCTCCAAGCC---TTTCTTCCGCTTCCCACTGTCTGAGGAACCCAAGGC-TGGTGGTCAGCCAGGAACCAACCA--------TTTCTGTTACTTAATGTGTCCCTGGCT----TGCCTTGACTTCAGCAAGCTCCCA---------------CCCCAACCCCCAGCCT---------TTGTCCCTCTGCACAAGTCCAAGTGCCAATTTT s canFam1.chr9 39352649 548 + 53642819 AGGGACTTACTGGTTCAGATAAAAGCCCCGCGTGGATGCCGTGATGCTGACTTGCCGGTCCTCAGCTGTGATCACAAACAGGTACATGAGATCCCCATGCATCTTACGGTTCCCGGGGGGTGGGTTCCAGCCGCTCATGGTGAGCACTTTCAGGCACTGCAGGGGCTGCA--GGA--------ATAGCCAAGTGTGAGTGGGGGCCGGGCCTCTAGG-TGGGGGAGCCCCCTGCCC---CGCCA-----------------------GAGACCTGCCCCCTGGCTCTGCTCCGG-AGTACTACCTTCCAGTCACGGTTCTGGGGCTGCAGGGGACACAATGGCCGCTCCCGGCTCCCAGGGAGGATGTACTCAGGTGGTGTGCAGTCAATGGGGTCCATCTCCAAGCC---CTTCTTCCGCTTCCCGCTGTCTGAGGGACCCGAGGC-CGGTGGTCAGCACAGGGCCACCCCGGG----------GCAAACCAATG-----CCAGTGTGGATGACTCCAGCCCTGCCCCCTCATGGTGGGAAGGCCTTGTCCCTGGCCCCTTCCCT---GGCCCCTGGTCCCTCTGCCCAAGCTCCAGTCCCAATGCC s fr1.chrUn 84939359 482 + 349519338 AGATACTGACTGGTTGAGGTAGAAGCCACGTGTAGAGGCAGTGACGCTGACATGACGCTCCTCCACAGTCACAATGTACAAGTACATGAGGTCACCATGCATCTTCCTGTTTCCAGGGGGAGGGTTCCAGCCGCTCATAGTCAAGACCTTCAGGCATTGCATAGGCTGCT--GGAGGAGTTAGATGAACAAGATTTA---GAATTTTAATTTATTTC-TGCAAAAGATACCCATGAATCCACTGTTTTAGCAGATTTAATCTCAAAAAGG------TTATTTGAAGA-TGTTGT--CCTTCACCTTCCAGTCCTTGTTCTGTGGCTGGAGAGGCACCAGAGGGCGGTCTTTGCTGCCGGGCAGAATGTGCTCTGGAGGGGTACAGTCAATCTGCTCAAGCTCGTTGCCTCTTTTCTTACGCTTGCCACTATCTGCAG---------C------ATCAAACAAGGAGAAGATA----------------------TGTATCCC---------CATCACATGTAAAGACTGCTCAAG------------------------------------------------------AA-----------AATATC a score=179547.0 s hg17.chr7_random 258555 177 + 778964 TC--------CCGCAACTCTCAGGTCACCATTGGAGAAGATGCTCAGGAAGAACAAGAAGCTGCAGTCAACCCTGCTGAAGGTGGCATATGGGTCCAGGCTCTTGAGCTGGTCTTCGACATGGTACATGTGGATGCAGGCTTTGAGCAGTGTGAGTAGCTCTTTCCGGAAGGAGGGGAAAACGGT s panTro1.chrUn_random 63452104 177 + 240967748 TC--------CCGCAACTCTCAGGTCACCATTGGAGAAGATGCTCAGGAAGAACAAGCAGCTGCAGTCAACCCTGCTGAAGGTGACAGATGGGTCCAGGCTCTTGAGCTGGTCTTCGACATGGTACATGTAAATGCAGGCTTTGAGCAGTGTGAGTAGCTCTTTCCGGAAGGAGTGGAAAAGGGT s mm5.chr11 47376965 172 - 121648857 TC--------CCGCACCTCCTAAGTCACCATCAGTGAAGACACTCAGGAAGGACAAGGAGTTACAGTCAACTCCATTGAAGGCATCAGATGGGTCCAAGCTCTTGAGGAGGTCTCTGACATGACGCACATGGATTCGGGCCTCACGCACCGTGTAAGGCTCTGCCAG--AGGAAGGAAAA---GC s rn3.chr10 48778930 173 - 110733352 CC--------CCGCACCTCCTAAGTCACCATCAGTGAAGACACTCAGGAAGGACAAGGAGTTACAGTCAACTCCATTGAAGGCATCAGATGGGTCCAAGCTCTTGAGGAGGTCTCGGACATGGCGCACGTGGATTCGGGCCTCCCGAACTGTGTAAGGCTCTGTCAG--AGGAGGGTGAAA--GC s canFam1.chr9 39353197 177 + 53642819 TC--------CCGCACCTCCCAAGTCGCCGTCAGTGAAGACGCTCAAGAAGGACAAAGAGTTGCAATCAACCCCGTTGAAGGCATCAGATGGGTCCAGGCTCTTGAGCAGGTCTCGGACGTGGCGCACGTGGATGCGGGCCTCACGTACTGTGTATGGTTCTGTCGGGAGGGTGAGGGGCAGAGT s fr1.chrUn 84939841 183 + 349519338 TCAGAGGGTAACGCACCTCCAAGGTCTCCATCGGTGAAGATGCTGAGGAATGACAGTGAGTTACAGTCCACTCCATTGTAGGCGTCGGAAGGGTCTAAACTTTTCAGAAGATCTCTGATGTGACGCACATGAATGCGAGCCTCACGCACTGTGTAGGGTTCTAGAGA--ATGAAGACAAGATGAT s danRer1.chr15 4868267 173 - 23217395 TC--------ACTGACCTCCAAGATCTCCTTCTGAGAAGACGCTGAGGAAGGAGAGGGAGTTGCAGTCTACTCCATTATAAGCATCTGATGGATCCAGGCTCTTCAGCAGGTCCCTGATGTGACGGACATGAATGCGAGCTTCACGCACTGTGTAGGGCTCTACAGG----AAACGCACAACAGC a score=8055.0 s hg17.chr7_random 258732 68 + 778964 GTTTCCAGGGTCCTACACC---CTAGAACGACCCATCTAGCACAG------------AAAACAGTTTGCAAC-GTGCTA-TCATG s panTro1.chrUn_random 63452281 68 + 240967748 GTTTCCAGGGTCCTACACC---CTAGAACGACCCATCTAGCACAG------------AAAATACTTTGCAAT-GTGCTA-TCATG s mm5.chr11 47377137 58 - 121648857 ATTACTATAGCCCTG-------TTGGAATAACCTGGCTTGCAATG------------AGA----TTTTCA---GTGTTT-TCATG s rn3.chr10 48779103 60 - 110733352 ATTATTATAACCCTA-------TTAGAATAACCTGACTTGCAACA------------AGA----TTTGCAGA-GTGCTT-TCATG s canFam1.chr9 39353374 69 + 53642819 GTTAGCAGGGCCCACTCCC-TGCTGCAACAACCTATCTAGCATGG------------ACA--AGTGTGCCATGGTGCTA-CCACG s danRer1.chr15 4868440 80 - 23217395 ATTA--ATAGCCCTAGATAACACTAAAATGTACT--CAAGCGAAAGTTCACATTTTTAAAACAGTTAGTAAA-GTACAATTCCTG a score=-123.0 s hg17.chr7_random 258800 1 + 778964 T s danRer1.chr15 4868520 1 - 23217395 A a score=91.0 s hg17.chr7_random 258800 1 + 778964 T s panTro1.chrUn_random 63452349 1 + 240967748 T a score=0.0 s hg17.chr7_random 258800 1 + 778964 T a score=10549.0 s hg17.chr7_random 258801 70 + 778964 GTGATTTTAATTTTCA--ACTTTAGGCTTTCATTT--------TCAATTTCCACAATAAACACATAAGGTGGGGTTCTGA s panTro1.chrUn_random 63452350 70 + 240967748 GTTATTTTAATTTTCA--ACTTTAGGCTTTCATTT--------TCAATTTCCACAATAAACACATAAGGTGGGGTTCTGA s canFam1.chr9 39353443 71 + 53642819 GTGAACCCGATTTTCA-CATTTCAGGCCTCCACTT--------ACAAATTCCATCCTGAGCACAGAAGCCAGAGTTCTGG s danRer1.chr15 4868521 75 - 23217395 GAAAATCCTACTTACAGTATTTT----TTGTATTTGTGATAAGTTAATTTACACCACT-GTACTTGATATAAGATTCTGA a score=2787.0 s hg17.chr7_random 258871 15 + 778964 TTTCAACACACACAC s panTro1.chrUn_random 63452420 14 + 240967748 TTTC-ACACACACAC s canFam1.chr9 39353514 15 + 53642819 ATTCAACACACACAC a score=946.0 s hg17.chr7_random 258886 10 + 778964 ATTCTCTCTC s panTro1.chrUn_random 63452434 10 + 240967748 ATTCTCTCTC a score=8635.0 s hg17.chr7_random 258896 89 + 778964 TCTCcctctctcttagaatcttccagtgcgttcacactgaaagccaaagtcctcccagaatcttgtgagaacctaaatgatctgAATAG s panTro1.chrUn_random 63452444 89 + 240967748 TCCCcctctctcttagaatcttccagtgcattcacactgaaagccaaagtcctcccagtatcttgtgagaacctaaatgatctgAATAG s canFam1.chr5 65390630 59 + 92064832 TCTCCCTGGTTCTT-GTATCTTCCATCATGGTCA-----------------CTGCCAGG--CCTGCGGGAA----------CTGAATGT a score=37961.0 s hg17.chr7_random 258985 172 + 778964 TTTGTCA----TTGATTT---TGGGGATCTGGGAAAATCTCTGCACATTTCTGGAGACCGC--TGTTATGCCAATTTTAATAAATCTGTTG-TGCTTCAATTCAGAAGTGTGTGAAGGGAGTTGTGGAGGAATTGGCATTTGGGTTAGAAATTCCAGGAACACCAGAGACAG-ATGACACCTG s panTro1.chrUn_random 63452533 174 + 240967748 TTTGTCA----TTGCTTT---TGGGGATCTGGGAAAATCTCTGCACATTTTTGGAGACCGC--TGTTATGCCATTTTTAATAAATCTGTTGCTGCTTCAATTCAGAAGTGTGTGAGGGGAGTTGTGGAGGAATTGGCATTTGGGTTAGAAATTCCAGGAACACCAGAGACAGCATGACACCTG s canFam1.chr5 65390689 173 + 92064832 TTTCCCACCACTTCCTTC---TGGGCATCTGGAAGAATCTGTGCCCATTGCTGAGGACCTCTGTGTTAAAGCCATTTAAAT---TCTGGTTTGGCTTCATGTCTGAAGTCTCTGAGGGG---TGTGACAATACTGAGATTTGGTTCAGAAATCTCAGGAACACTGGAGACAG-ATGCCACATG s fr1.chrUn 42097275 173 - 349519338 TCTTCCA----TTGCTTCAAGGGGGGATATAAGAATATCTCTGAGTATTTTGAGGAAGTGC-ATGTTAGATCATTTCTGA-AGTTTTCTTTTTCCATCATATCTGAAGTGTGTGAGAGC---AGTGGTGACATTAAGATTTGTTTCAGAAATCTCAGGAACATCAATGACAG-ATGTTACTTG a score=16475.0 s hg17.chr7_random 259157 145 + 778964 TTTTCTGCTTCATAATGTCAAGTTTTACGATGGC-TAAAACCTAATTCTACAAGAAAATTAGACTGAAAAACTTTAT--AGGCAAAAATTATCTTATTAAATAGGAAAATCTAAGTATTTTATTTTAAAATTTCCTTTTTCTTAGTAG s panTro1.chrUn_random 63452707 145 + 240967748 TTTTCTGCTTCATAATGTCAAGTTTTACGATGGC-TAAAACCTAATTCTAAAAGAAAATTAGACTGAAAAACTTTAT--AGGCAAAAATTATCTTATTAAATAGGAAAATCtaattattttattttaaaatttCCTTTTTCTTAGTAG s canFam1.chr5 65390862 141 + 92064832 TTTTCTGTTTTATTATCTCCAATCTAATGGGGGCTTCAGACATCACTGTGCA--AAATTCAGAGTCCACGATTTCATCAGAGTACAGAACATCTCCCTAAAATGAGCCACCCAAGTGCCTCATC-----ACCTTATTTTTTTTAATAA a score=9955.0 s hg17.chr7_random 259302 108 + 778964 GACCTAATCATAGAAATGTAAACTCTATATGCCAACAGCCTCTACTGTAGGATGGTTTATTGTATGTAC-TCATTTTACTGATTTCTTACAA-----AAACTTTTTCCG---TAAGG s panTro1.chrUn_random 63452852 109 + 240967748 GACCTAATCATAGAAATGTAAACTCTATATGCCAACAGTCTCTACTGTAGGATGGTTTATTGTATGTAC-TCATTTTACTGATTTCTCACAA----GAAACTTTTTCCG---TAAGG s canFam1.chr1 106568726 116 + 124897793 GAACTAACATTAGAAATTTCAACTCTGTGTTCTCTAATTCCTAAATGGTAAAAATAATATC-TATTTACATCATATTTTTTACATCATATAATTGCTAAAATATTAACGTCATAGGG a score=5159.0 s hg17.chr7_random 259410 37 + 778964 GAAATTAGAATATTGTTCAACATATA-------------TTGAATTCACA-- s panTro1.chrUn_random 63452961 37 + 240967748 GAAATTAGAATATTGTTCAACATATG-------------TTGAATTCACA-- s canFam1.chr1 106568842 36 + 124897793 GAGCTTAGAACATTGTCCAAAATATA-------------ATAAA-GCATA-- s danRer1.chr23 22422157 52 + 22442303 GAATTTAGGAATTTGATTTGCATATATATGAATTGTCGTTTGGATTTGCGTA a score=71812.0 s hg17.chr7_random 259447 760 + 778964 ATTATTACTTTATTTCTCACTTAGTAT-TTTATGATTCTGTCTTCTTTAATATGAAGATTACTAT-GACTGTGTTTTCACTTTC-TGAATTATCATGTGTCACATTTGTCTGTAATTTCCT-TTCAGAAGTTGTAAAATAGCATGCTCAAATGtatatattatgtataaat----------------tatataatttataatttattaaaatatttGGCTTGTATGTTTA---ATTGACTCTAGGCACAATGTTACTATTAGCATCTTCTTCCAG-TTTTCCCAACTTT---TATTTGACTAATAG-----------TACAATTTATTTCCAATTTTTATTTTATATGTCAATGTTT-TATACTGTA-TTTACAATATTTATATTG--TTACCATATTTAGAAATGTAAGACTTTT---------------------------------------------------------------------------------------------CAATTAAAAGCTAGATTACAGCCTTATCGTTTTGTGTAAGAAAAGCAGCAA---TGCATCAGTAGCATAATTTAAAACTTTCTCTAGTATTACTTAAATGCTTATTCCTTAAAACTTTCTCATCACAGCTCTTTGTATT----AATTATAATGTGTTTTCTCTGAAATGTTGTTGC--CCTAACTGTATCCAAAT--AATTCAAAATTCATACTTTTCATAGATTCACAGGAAGAGTTAAAAATTGTAGTTACCTG-----GGAT--TCTTTTTCATTTGG-ACA-CT--------ATG-TTTATTCAGGATTTTATGGATTAAAGTTTCTCTTAATTATGTTTTATAATTTTATGTTTCTGTA-----TT----------TTTTAGAGTAGGCTGTCTCACATCAGTTAATTGTGTTTTTACTTTCTAC s panTro1.chrUn_random 63452998 761 + 240967748 ATTATTACTTTATTTCTCACTTAGTAT-TTTATGATTCTGTCTTCTTTAATATGAAGATTACTAT-GACTGTGTTTTCACTTTC-TGAGTTATCATGTGTCACATTTGTCTGTAATTTCCT-TTCAGAAGTTGTAAAATAGCATGCTCAAATGTATACATTATGtataaat----------------tatataatttataatttattaaaatatttGGCTTGTATGTTTA---ATTGACTCTAGGCACAATGTTACTATTAGCATCTTCTTCCAGTTTTTCCCAACTTT---TATTTGACTAATAA-----------TACAATTTGTTTCCAATTTTTATTTTATATGTCAATATTT-TATACTGTA-TTTACAATATTTATATTG--TTACCATATTTAGAAATGTAAGACTTTT---------------------------------------------------------------------------------------------CACTTAAAAGCTAGATTACAGCCTTACCGTTTTGTGTAAGAAAAGCAGCAA---TGCATCATTAGCATAATTTAAAACTTTCTCTAGTATTACTTAAATGCTTATTCCTTAAAACTTTCTCATCACAGCTCTTTGTAAT----AATTATAATGTGTTTTCTCTGAAATGTTGTTGC--CCTAACTGTATCCAAAT--AATTCAAAATTTATACTTTTCATGGATTCATAGGAAGAGTTAAAAATTGTAGTTACCTA-----GGAT--TCTTTTTCATTTGG-ACA-CT--------ATG-TTTATTCAGGATTTTATGGATTAAAGTTTCTCTTAATTATGTTTTATAATTTTATGTTTCTGTA-----TT----------TTTTAGAGTAGGCTGTCTCACATCAGTTAATTGTGTTTTTACTTTCTAC s canFam1.chr5 65391059 832 + 92064832 GTTTTCACtttcttttt------------------ttttttttttttt-----------------------tgttttCACTTTC-TGATTGAACTTATGTGAAATTCGTCTATGATTTTAGATCCAAAAGTTCTGATAGAATGTGCTGGAATGTACACATT-TTTATAAGTGAGCCAGGGTACTTAGTAGGCACTTCAT-ATTTATTAAAATGTTTGGTTCATAAATATA--GGTTTACTTCAGACAAAAAGTAATTATTGGAATTATCATCCAC-TTTCTTCGAAATG---TATCTGAACCGTGG-----------TGTAACTTAATCTCAAAT----GTTTATGTATCAGCGATT-CTCAGCATATTTTACAACTTTCATGGTA--TTCCTTTATTCAGAATGAAGAGGTTTTTTTGTTTGTTTAGtctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttctcttttttATTTTTTGCATCTAAGGGATGGATTACAGTCTTTACATTCTGTGTAAGAGTAGGAGCAATATTATATTAATAACATAAT----GAATTTCTCTAATGTAATTTAAATGCTTATTCATTAAA----CTTCATTAGAGCTTTTATGATT----GAGTGTAATGAATTTTCTGCCCAGTTTTACTGCCACATAAACACATGCCAAT---ATTCAAAACACTTGCTTTTCATGGGCACACAGTCATAATTTAAAATAGTAGTTTTATA-----GGATC-TCTTTGATACTTGATACATCT--------GTGTTTTATTTAGAATTTTGGGGGTTAAATTTTCCCTTATTCTTGTTTTGCAATTCCATAACAATATACTTGTCT----------TTTAATAGTAGCTTCCACAACATTGGTTAATTGTGGTTTTGTCTTTTAC s danRer1.chr23 22422209 732 + 22442303 TTTATTAATTGTCTTTTGGATTTGCATATTTATGA----ATTGTCTTTTGGATTTGCATGTTTATGGATTGTGTTTTGAATTTAGGGATTGGATTTGCGTATTTATTAATTGTGTTTTGAA-TTTAGGAATT------TGATTTGCATA-------------TTCATGAAT------------------------------------GGTCTTTTGGATTTGCATATTTATGAATTGTCTTTTGG------------ATTTGCATGTTTATGGATTGTGTTTTGAATTTAGGGATTGGATTTGCAATTTTTCATATTTATGAATTGTTTTGAATTTAGGAATTGGATTTGCATATTTATTAATTGTG-TTTTGAATTTAGGAATTGGATTTGCATATTTATTAAT----TGTTTTT-------------------------------------------------------------------------------------------TGAATTTGGGAATTTGATTTGCATATTTATTAATTGTGTTTTGAGTTTAGGAA--TTGGAT---TTGCATATATATGAATTGTCTTTTGGAT---TTGCGTATTTATTAATTGAG-----------------TTTTGAATTTAGGAATTGGATTTGGATATTTGTGAATTGTCTTGGA--TTTGCATATTTATGAATTGTCTTTTGGATTTGCACATTTATTAATTGTGTTTTAA-ATTTAGAAATTGGATTTGCATATTTATTAATTGTGTTTTGAATTTAG-GAA-TTGGATTTACATA-TTTATTAATTGTCTTTTGGATTTGCATATTTATGAATTGTGTTTTGGATTTTCATGTTTATGAA-----TTGTGTTTGGAATTTAGGACTTGGAT-TTGCATATTAATGAATTGTCTTTTGGATTTGC-- a score=2871.0 s hg17.chr7_random 260207 15 + 778964 ----CTATTTATTATGATT s panTro1.chrUn_random 63453759 15 + 240967748 ----CTATTTATTATGATT s canFam1.chr5 65391891 15 + 92064832 ----CTATGTACTATGTTT s fr1.chrUn 84947232 15 + 349519338 ----CTATAATTCATGCTT s danRer1.chr23 22422941 16 + 22442303 ATATTTATGAATTGTT--- a score=5315.0 s hg17.chr7_random 260222 146 + 778964 TTGAATTTCATTAT--------TCAAATAAGAATTTGGGGGTTAATGTT---TATTTTAACTTTGTTTTGC-AATTTTAC----ATTTCTGTGTTTCATGTTTTAG--GGTAGGGCACCTTATATTAGTTTATTGTTTTAAGT-TTTAATTTGTATAATATAATA s panTro1.chrUn_random 63453774 147 + 240967748 TTGAATTTCATTAT--------TCAAATAAGAATTTGGGGGTTAATGTT---TCTTTTAACTTTGTTTTGCAAATTTTAC----ATTTCTGTGTTTCATGTTTTAG--GGTAGGGCACCttatattagtttattgttttaagt-tttaatttatataatataata s fr1.chrUn 84947247 164 + 349519338 TTGAGTTATATTTTTGTCAGCCTAAAGTCAACTGTTGGCTGTTGAGGTCATGTGTTCCAGTACCAAGATAT-GATTTTATTACAATAACTGTGTTACATTATTCAAGTGTCCTAACAGATTATTTCAGCTGACTATTGATGGTGCTTAATGTGTAAAGTCATACA s danRer1.chr23 22422957 109 + 22442303 -------------T--------TGAATTTAGAAATTGGATTTGCATATT---TAT----GAATTGTGTTTT-GAATTTAG-------------------GAATTGG--ATTTGCATATTTATTATTTGTTTTGAATTTAGGAA-TTTGATTTGCATA-TAT---- a score=6869.0 s hg17.chr7_random 260368 74 + 778964 TTGTATAACAATATTCAACTCTGTATGCATTAAGACAGTGTG--GGGCAGAAGTCA--AATATGAAC--CATCCCTATGT----- s panTro1.chrUn_random 63453921 74 + 240967748 ttGTATAACAATATTCAACTCTGTATGCCTTAAGACAGTGTG--GGGCAAAAGTCA--AATATGAAC--CATCCCTATGT----- s canFam1.chr5 65391906 74 + 92064832 TTTTATGACATTTTCCAACTCAATGCATTTTAAGACAAAATG--GGGTTTAATTCA--AGTATGAAT--CAGCCGTATGT----- s fr1.chrUn 84947422 76 + 349519338 CTTAGTAACTGCGTTATAACCTAAGAATCATTTGCAGATGTGAAGGGCTGAAGTCA--GATAAGATC--CATGTCCATGT----- s danRer1.chr23 22423066 78 + 22442303 --ATGAATTGTCGTTTGGATTTGCGTATTTATTAATTGTGTT-----TTGAATTTAGGAATTTGATTTGCATATTCATGAATGGT a score=4087.0 s hg17.chr7_random 260442 49 + 778964 CTTTTG--TTAATACAATGATTTAACTGTTT-----G------TTTGCCTGTATAAATATTG s panTro1.chrUn_random 63453995 52 + 240967748 CTTTTG--TTAATATAATGATTTAACTGTTT-----GCCCCTATTT---TGTTTAAATATTG s canFam1.chr5 65391980 49 + 92064832 CTATTT--TCAGTAAAGttatatatatattt-----a------tctatataaataaatGTTA s fr1.chrUn 26246375 42 - 349519338 -CTTTT--CCAATAGAATTATC------TCT-----A------TTTGCCTGGAAAAATGTTA s danRer1.chr23 22423144 55 + 22442303 CTTTTGGATTTGCATATTTATG-AATTGTCTTTTGGA------TTTGCATATTTATGAATTG a score=0.0 s hg17.chr7_random 260491 9 + 778964 CCCCTATTT a score=1143.0 s hg17.chr7_random 260491 8 + 778964 CCCCTATT- s panTro1.chrUn_random 63454047 8 + 240967748 CCCCTATT- s canFam1.chr5 65392029 8 + 92064832 CCCATGCT- s fr1.chrUn 26246417 9 - 349519338 TCCTTGTTT a score=546.0 s hg17.chr7_random 260499 1 + 778964 T s panTro1.chrUn_random 5210082 1 + 240967748 T s canFam1.chr5 65392037 1 + 92064832 T s fr1.chrUn 26246426 1 - 349519338 T a score=15518.0 s hg17.chr7_random 260500 113 + 778964 TGTTTATGACTTTTATATTT-TCT--TCTTATTTGATGGCCAATAAT-------------TTATTCTGTCTA--AGTGAGTAATCATGGAAATTGTCTTAATTTCAACAT-CTATT---------GTTTATATTATCTTAG s panTro1.chrUn_random 5210083 113 + 240967748 TGTTTATGATTTGTATATTT-TCT--TCTTGTTTGATGGCCAATAAT-------------TGATTCTGTCTA--AGTGAGTAATCATGGAAATTGTCTGAATTTCAACAT-CTATT---------GTTTATATTATTTTAG s canFam1.chr5 65392038 132 + 92064832 TGTTCATGACTTACCT-TGT-TCG--TTTCTTTTGCTGGTTAATGTTATCAATGATTGTGTTATCCTGTCTA--GGTGAGTTGTCATAAAAATAGAATTAATTTCATCAT-CTATTTATTGATAAATTTATATTTTCTG-- s fr1.chrUn 26246427 127 - 349519338 TTTTTATAACTTGTATATTTGTTG--TGAAGGTTTGTTGTGAATAGT---------TTTTTAATCCTGTGTA--GATGAGAAGTCAT-GAAATTCTTGTAATTTCAACATCCTATTAATTTGTGAATATATGTGATTTTTG s danRer1.chr23 22423199 106 + 22442303 TGTTTTGGATTTTCATGTTT-ATGGATTGTGTTTGGAATTTAGGAAT-------------TGGATTTGCTTATTAATGAATTGTCTA---------TTGGATTTGCATAT-TTATT---------AATTGTGTTTTGAA-- a score=8189.0 s hg17.chr7_random 260613 42 + 778964 TGTGAAGGAAAGATTTATGTGATTTGAAGATAATTTTTCAGA s panTro1.chrUn_random 63454055 42 + 240967748 TGTGAAAGAAAGATTTATGCGATTTGAAGATAATTTTTCAGA s canFam1.chr5 65392170 42 + 92064832 TGTGAGAGAAACACTTTTTTGAATTGAAGGTAATTTTTACAA s fr1.chrUn 26246554 38 - 349519338 CATGGGAGAAACACATTTG-GTTTTGAATATAATTT---AAA s danRer1.chr23 22423305 41 + 22442303 TTTAGAAATTGGATTTGCA-TATTTATGAATTGTGTTTTGAA a score=3117.0 s hg17.chr7_random 260655 14 + 778964 AACTTTGTAACTCT s panTro1.chrUn_random 63454097 14 + 240967748 GACTTTGTAACTCT s canFam1.chr5 65392212 14 + 92064832 ACTCTTATACCTCT s fr1.chrUn 26246592 14 - 349519338 ACTATCATAACTAT a score=0.0 s hg17.chr7_random 260669 10 + 778964 GTCCCTTCGG a score=311.0 s hg17.chr7_random 260669 2 + 778964 GT s panTro1.chrUn_random 63454111 2 + 240967748 GT s canFam1.chr5 65392226 2 + 92064832 AT a score=520.0 s hg17.chr7_random 260671 8 + 778964 CCCTTCGG s panTro1.chrUn_random 63454113 8 + 240967748 CTCTTCAG a score=537.0 s hg17.chr7_random 260679 6 + 778964 GTGTC--t s panTro1.chrUn_random 63454121 8 + 240967748 GTGTCttt s fr1.chrUn 26246606 6 - 349519338 GTATC--T a score=27098.0 s hg17.chr7_random 260685 297 + 778964 ttttttttttttttttttcttttgacagactctcaccctgttgccaaagtgcagtggcacaatcttggatcactgcaacctccacctcccaggttaaagcaattctccagctgctgcctcttgagtagctggcattaaagttgtgcaccaccgcgcctggctaatttttgtatttttcatgaagctggggtttcaccatgttggccaggctggtcttgaacttatggcctcaagtaacctgcatgcctcagcctcccagagtgctgcgattacaggcatgagtgatcactcttggcc s panTro1.chrUn_random 63454129 297 + 240967748 tttttttttttttttttttttttgacagactctcaccctgtcaccaaagtgcagtggcacaatcttggatcactgcaacctccacctcccaggttaaagcaattctccagctgctgcctcttgagtagctggcattaaagttgtacaccaccgcgcatggctaatttttgtatttttcatgaagctggggtttcaccatgttggccaggctggtcttgaactcatggcctcaagtaacctgcatgcctcagcctcccaaagtgctgggattacaggcatgagtgatcactcttggcc a score=9882.0 s hg17.chr7_random 260982 61 + 778964 CTTGGGTGTCAT-TTTTAAtttcgattgtggtaaaaatacataacataaaatttagaatctt s panTro1.chrUn_random 63454426 57 + 240967748 CTTGGGTGTCAT-TTTTAAtttcgattgtggtaaaa----ataacataaaatttagaatctt s canFam1.chr5 65392235 62 + 92064832 TTTAATTGTTATATTTTAttcttaactgtggtcaaaacacatgacataaaatttatcatctt a score=12984.0 s hg17.chr7_random 261043 124 + 778964 taatattttttcttatacagttcagtcatgttaagtgtatttacattgttaagcaacatatttgtaaaattttttcttttgcaaaactaaaa---ctcagtacacatgaaatgacaactacc--------------------------------cattg s panTro1.chrUn_random 63454483 124 + 240967748 taatattttttcttatacagttcagtcatgttaagtgtatttacattgttatgcaacatatttgtaaaattttttcttttgcaaaactaaaa---ctcagtacacatgaaatgacaactacc--------------------------------cattg s canFam1.chr1 106570699 146 + 124897793 -aaccattt------taaactgcag---tgtgaagtatatttatgttgtaa---aatcaacctctgggatttctcatcttgcaaaatagaagtacctcagtacctgttaaacaaccacttccatatgtatctctattctaagccccagcaactacattt a score=14394.0 s hg17.chr7_random 261167 130 + 778964 -------tccttaccacctggctcctgataaaaatcattctattttctggttctaagtttc----------aatactttagatattacatataagtagaatcatagagtatctgttttattgtgactaat----tttacttagcattatgt s panTro1.chrUn_random 63512514 130 + 240967748 -------tccttaccacctggctcctgataaaaatcattctattttctgtttctaagtttc----------aatactttagatattacatataagtagaatcatagagtatctgttttattgtgactaat----tttacttagcatcatgt s canFam1.chr1 106570845 139 + 124897793 tcctcctttttttattcctaccttcc--------tcactctctcctttccttccctacttccttctcttctactatattaggttcctcacagaagtgaaagc--agtgtatctgtct--ctgtgacccatttacttcacttagcataatgt a score=46967.0 s hg17.chr7_random 261297 617 + 778964 tctcaagattcctctttattgtggatggtacaagattttctgcctttaaaagctaagtaatattccattagttttatattacaaattttatttatttattcattctatgaggaaaatttgtgttgctttcacctattggcatttctgaataatgctgcaatgaatattggtatgcaaatagctatttgCTCATatgtgtgaggtttacatgtgtgctaccttctgttttattggaaaaattgtctgtgtttatgccagaaacaaactgttttcattgctgttgctttgtaatgtgctttgaaatcagaaaaggtgaggtcactaacattgtttttttt---aaacattttggggctctttatggtcgcttgagattccatataa-tttgttggttcctttttctatttcaaaaaaaaagttcttaatttaaaaggg-attgc-attgaatctgtaactc-gctttagacatcataagcattattcataatattaagtcttacaacccttaaacatgAGCATgctcaaaagtgagttgtttaatttccatatatatgttgctatttttgttttcttctgttattcatttctagttttattccattttgatcagaaataataGCCA s panTro1.chrUn_random 63512644 610 + 240967748 tctcaaaatttctctttattatggttggtacaagattgtctgcctttaaaagct--------ttccattacttttatattacaaattatatttatttattcattctatgaggaaagtttgtgttgctttcacctattggcctttgtgaatagtgc---aatgaatatgggtgtgcaaataactatttgCTCATatgtgcgacgtttacgtctgtgctaccttctgttttattggaaaaattgtctgtctttatgctagaaacaaactgttttcattgctgttgctttgtaatgtgctttgaaatcagaaaagttgaggccactaacattgtttttttttttaaacatttttgggctctttatggtcgcttgacattccatataaatttgttggttcctttttctatttcaaaaaaa---ttgctaatttaaaaggggattgccattgaatctgtaactccgcttaaggcatcatgagcattcttcataatatcaagtcttacaacccttaaacatgAGCATgctcaaaagtgagttgtttaatttccatatatatgttgctatttttgttttgttctgttattcatttctagttttattccattttgatcagaaataataGTCA a score=24213.0 s hg17.chr7_random 261914 192 + 778964 TTGAAAGGCTAAACCACTCTGGGAAGTGACCCCCATTATAGAACATTACAAAGAGATGTGAGGGCACCACTTCTGCCCTGATGGGC------TACTGGGATGAGTTCTCTTAGATGACACATTGCAGACAAATGTAGGAAACAATATAACCCC------TTTTTCATGTAAACTC---TTCCCTATTTTTGTAGAGTATTAGTGATA s panTro1.chrUn_random 63513254 192 + 240967748 CTGAAAGGCTAAACCACTCTGGGAAGTGACCCCCATTATAGAACGTTACAAAGATATGTGAGGGCACCACTTCTGCCCTGATGGGC------TAGAGGGATGTGTTCTCTGAGATGACACATTGCAGACAAATGCAGGGACGAATATAATCCC------CTTTTCATGTAAACTC---TTCCCTATTTTTCTAGAGTATTAGTGATA s canFam1.chr34 29646483 206 - 45232793 TTGAAAGGCTGAATC-CTGTGGCAGACGGCCTCATTTATAGAGTACTATGAAGATCTATAAGGACATAGCTCATGACATGTTGGGCCTACAATAATTTGATGAGTTCTGAGAGAGGAAGCATTACAGAGAAACATATAGAAAGGCTTCATCCCACCCTTCCTTTTGTGTTAAATCACACTCTTTAATTCTTTAAAATGTTTTTTAAA a score=108644.0 s hg17.chr7_random 262106 1029 + 778964 GTGGTGGCTTTCAA-GTCTTGGAGAAAGTCTGGCAGTACCATGAACCTGCTTGCTACAGATGATATCAGAGGGGAATAATTAAAACTATACAAACTGTAGTAACATGAATAAATGC----AGCCTAGTGTAAAGTAA---AAACAA---CACAAAGGCC-----------------TTCTCTGATATTTCTACAAGAATGTAAAAAGGGACTTTACACTTAACCAAGTTGCCACTGGGACCA---GTTAAGGCT-AGAT-TTTTGGGGGGTAGATCTGAGGGTCACTCATGGAAATCCCCTAGGAGAAAGCGCAGAG--AAATTCCATATTTGGGTCTGGATCCTGGACCCATCCTGGTTTTGTCAGGTCCCTCTCTGTAGAGAACCCCATGTGCCTGCTCTCAACATAACTCATTGTATGCCATGCTTGGGGGGTGTGGTGAACCTGCCAGTTGTCCAAGGAGATGGGGGACTTGAACCCATCAAATATCTGCTCACTGA-TTTT---AATGCAGCTCTACAAAGAGTGTTCCCAGCAGCGAA-------------------------------AAAAGTTAATTGTCTTCTTTGTTTTTACCACCAGGTGACATCTGCATTAGAAATTCTGTTTCCTAGATCAGGAACATAGGAGTATCTGCATAGACCCCCAGCCAATGAGGAAACCCGAGGACAG---CTTAAGGCCTTGGGATTCACATCTGAGTAGACGTACTTG-GTCCGCAA---CTCACAACTTTTTATTCCACCAACCGTGACC-TGGGTATGAACATGACAGACCCACCAGGGTTCCTGTGTCTTAAAACCTGCCCCTGTGAGGAAAAGCCCCCTCCTTTCCTGCTCCCCTTGCA-------------------------------------ACACAGGGT-AATGGTAGGCAGGGTCGGGTTGC-----------CCAGATTAGATG---ACACAG-GTGGCCTGGCATGGACGGACCTGCCCTGGGCTAAACTGTGTTACCTGTGGGTGCCTCTTGTCGAATGGCCAGTGGTATCAAGGATGTAGGCTGAGCCAGTATGTATACTGTCAGAAAAGGCTCTCACTTTGAGCCTTTCTCAGGCAACAGC--------TTGGGAATATA--ACACAATGAGAACACAGTG s panTro1.chrUn_random 63513446 1064 + 240967748 GTGGTGGCTTTCAA-GTCTTGGAGAAGGTCTGGCAGTGCCGTGAAGCTGCCTGCTACAGGTGATACTAGGGGGGAATAATTAAAACCATACAAACTGTAGTAACATGAATAAATAC----AGCCTAGTATAAAATAA---AAACAA---CACAAAGGCC-----------------TTCTCTGATATTTCTACAAGAATGTAAAAAGGGACTTTACACTTAACCAAGTTGCCTTTGGGACTA---GTTAAGGCT-AGAT-TTTTGGGAGGCAGATCTTTGGGACACTCATGGAAATCCCCTAAGAGACAGCCCAGGG--AAATTCCATATTTGGGTCTGGATCCTGGGCCCATCCTGGTTTTGTCAGACCCCTGTCTGTAGAGACCCCCATGTGCCTGCTCTCACCGTAACTCACTGTATGCCATGCTTGGGGG-TGTGGTGAACCTGCCAGTTGTCCAAGGAGATGGGGGACTTGAACCCATCAAATATCTGCTCAATGAGTTTT---AATGAAACTCTACAAAGAGTGTTCCCGGCAGCGAAGCAGaaaaaaaaaaaaaaagaaaaaagaaaaaaaaaTTAATTGTCTCCTTTGTTTTTACCACCAGGTGACATCTCCATTAGAAATTCTGTTTCCTAGATCAGGAACATAGGAGTATCCGCATAGACCCCCAGCCAATGAGGAAACCCGAGGACAG---CTTAAGGCCTTGGGATTCACATCTGAGTAGACACACTTGAGTCCACAAATGCTCA--ACTTTTTATTCCACCAGCCATGACC-TGGGTATGAACATGACATACCCGCCAGGTTTCCAATGCCTTACAACCTGCCCCTGTGAGAAAGAGCCCCCTCCTTTCCTGCTCCCCCTGAA-------------------------------------ACACAGGGT-AATGGTAGGCAGAGTCGGGCTGC-----------CCAGATTAGCTG---ACACGG-GTGGCCTGGCATGGACGGACCTGACCTGGCCTTCACTGTGTTACCTGTGTTTGCCTCTTGTCGAATGGCCAGTGGTATGAAGGATGTGGGCTGAGCCAATATGTATATTGTCAGAAAAGGCTCTCACTTTGAACCTTTCTCAGGCAACAGC--------TTAGAAATATAGCACACAATGAGAACACAGTG s canFam1.chr34 29647221 1091 - 45232793 GTGATGATTTTTAAGGTTTTGGAGAAGTTCTTCAGGGACAGTGGAGCTGGGTTCTACACAGGATATCTGGGACGAGTAGGTGAAATAGTAAAAACAGTAGTAAAATGTAAAGATACTCATCACTTTGTGAAAAACAAAACAAACAACCCCACCAAGCCCTCAAAACACTAAATATATTCTGCACTATTCCAACATAGTTG--AAGAGTGTCTTCCCACCTCATCATGTGGC--TGGGGGCTAGGCGTGGAGGTTCAGATCTCTTTGCATTTGGGCCTGTGCGACACCCATGTGGCAGCACTATGGGAGGGCCCCAGGTTTCTCTCCATGTTTGTGTGGGG--------------------------GGTATATTTCTGTGGAGAACCCTCTTCCCATTCTCACAGCACTAATCCTTGTTTGCCA---------------GTGCACCTGATAATTGTCTAGGGAGTTGGATTAGTTGAAGCCACAGACCATCTCCTCCAAGA-TCTCCTGGATGCAGCTCTGCAAATACAGTGCCCATATATGCA-----------------------AGGCCAAGAGACATTAGGGTCCTCCCTGGACATCGCCACAAGGGGACACTCCCATTAGAAATCATGTTTTCTAGTTCAGACCAAGAGGGGCCGCTGAAGAGATATCTGG-CAAGGAGGAAGTCAGATGAAAGAGATTCTTGGGCTCATGACTAACATATTCGCAGTTGAGCTTG-GTCCCCAG-CACTCA--CCTTCTCATCTTGCCTGTTATGACCTTGGGTCTGAACACAAAAGATGTGTCAGGCTTCCAACACCTGGCAGCTGGTTTCTGCCCAGAAGGGCATGTTCCTCTCCTGTCCCCTCTCCACCCACGGATacacacacacacacacacacacatacacacacacaATGAGGGGTAAGAGGTGTGGGCCTGCTGAGGTCTGGGCCTGATCAGGTGTGATCACAGTGTGGCCTGCTCTCCAGTGGGCTGTCCCACACAGCCTTGTGGTACCTGTTGGTGTCTCCCGCCACATGACCAGAAGTTTCAGAGTAGAGGGCCAAGCTGACATAGACAGCGACGTGAAAATCTCACACTCTAGACTCTCCTGAGCCCAGAGCACCAGAAAGTAGGAATATA----GCAAC-AGAACATCTTG a score=8274.0 s hg17.chr7_random 263135 42 + 778964 CCCTCTCAAGCATCTCCCAAGAAGTTAGCTAGATACAGGGCT s panTro1.chrUn_random 63514510 42 + 240967748 CTCTCTCAAGCATCTCCCATGAAATTAGCTAGATACAGGGCT s rn3.chr3 163461796 42 - 170969371 CCGCCCCAAGCACCTCACAAGAGACTGGCTCACCACAGGGCT s canFam1.chr34 29648312 42 - 45232793 TATTCTTGACCATTTCCAGTTAAGTGAGCTAAAAAGTGGGAA a score=51047.0 s hg17.chr7_random 263177 383 + 778964 GTCTCTAGAATGTGGGTTTCTGGTTCCCAAAGTTCTAAATTCTGTTAGGTTTTGTCACAAGGGAAGTCTGTTAACTTCTTC-AAGGTTTTATCCCCTGAGCCCTTTTCCTCCAT-AAATCTACGCAAAGTCCCTGCTGGGCTGCTGATTGCTCACCCTCCTCTCCCATGTCAACTCTTTACCTGTAAACAGTTATGCAAACACAATTATGTCCCTTAATTCCCAAAAAGTTCTAAATGCAGCCAGGGCCCCAGGTTTGAGAGAACAGAGTTGGGTTAAAATCTTCTTTTC---------CTTTTCATTTCTGTGACCATATGAAAATGACTGTGTGCTTCAGGTC-TCCCCAGCCCTGAAGTATGCATAAT-GGGATTATGCTAACATCAACTTCC s panTro1.chrUn_random 63514552 384 + 240967748 GTCTCTAGAATGTGGGTGTCTGGTTCCCAAAGTTCTAAATTCTGTTAGGTTCTGTCACAAGGGAAGTCTGTTAACTTCTTCTAAGGTTTTATCCCCTGAGCGCTTTTCCTCCAT-AAATCTATGCGAAGACCCTGCTGAGCTGCTGATTGCTCACCCTCATCTCCCATGTCAACACTTTTCCTGTAAACAGTTATGCAAACACAATTATGCCCCTTACTCCCCAAAAAGATCTAAATACAGCCAGGGCCCCAGGTTTGAGAGAACAGAGTTGGATTAAAATCTTCTTTTC---------CTTTTCATTTCTGTGACCATATGAAAATGACTGAGTGCTTCAGGTC-TCCCCAGCCCTGAAGTACGCATAAT-GGGGTCAGGCTAGCATCAACTTCC s canFam1.chr34 29648354 377 - 45232793 -GGTCTAGAATGTAGGTTCCTGGTTACCAGAGTTCTAAGTCAGTTGTGGGCTTGTCACCAAGGAAGTGAGGTCACTTTTTC-AAGATTCCAGCACCTGGGCCCCTTCCTTCAGTCAGACCTATCTAGAGCCCCTTCTTGGCAGATGACTGCTTACC-------CCAATGTCATCTCTTTAACTGTACACAATGAGCCAAAAAT-GCCATAGCCACAACTCTCTGA--------AAATGCAAGTAAAATCCTACctttgaggagacagagctgaatttagacccttatttctctgtttgttttcccagttctgtgtcc-tgcctaacccactgtgtctctcacatagtccccagtttcctaacctgcacagtgggggccaggctagcatctgcttcc a score=38335.0 s hg17.chr7_random 263560 535 + 778964 AAAAACAGTCTTTGGTGATATATGAGATAGAATGAATCAAAATCggttggatgcagtggctcttgc-tgtaatcttagcagattggtagaccaaggcagctggaacacttaaggccaggggtttgaaaccagccatggccagcatggcaaaaacccttctctacgaaaaatccaaaaattagccagatgtgttgatgcatgcctgtaatcc-cagccactcaggaggctgaggtgtaagaatcacttgagcccaggaagcagagattacattgagccatgatcctgccactgcactccagcctgggtgacagagcgagactgtgtctcaaaaaatatatatatata-taatgtatataaatatttttatttatatattatatataactatatatatatcaattatatataactatatataatatataaacttatacatatatatctttatatataAAAGATACATAGTTTATGTATCTTTATACATAAAAGATATATATTTTATATATATGGCCTTAATTTTCCATTCCACAGCAGAA s panTro1.chrUn_random 63514936 499 + 240967748 AAAAACAGTCATTGGTGATATATGAGATAGAATGAATCAAAATCggttggatgtagttgctcttgcctgtaatcttagcagattggtagaccaaggcaggtggaacacttaaggccaggggtttgaaaccagccatggccggcatggcaaaaacccttctccactaaaaatgcaaaaattagccagatatgttgatgcatgcctgtaatcctcagccactcaggaggctgaggtgtaagaatcacttgagccaaggaagcagaaattacattgagccatgatcgtgcctctgcactccagcctgggtgacagagcgagactgtgtctcaaaaa---tatatatatactaat-tatatatatattcatatttatatattatatataa-----------------------------------tatataAACTTAGACATATACACCTTTATGTATAAAAGATACAAATTTCATATATCTGTATACATAAAAGATATATATTTTATATATATGGCCTTATTTTTCCATTCTACAGCAGAA a score=1617.0 s hg17.chr7_random 263943 35 + 778964 ctata--tatatatcaattatatataactatatataa s panTro1.chrUn_random 5213616 31 + 240967748 ctatatttatatat------tatataactatatataa a score=17385.0 s hg17.chr7_random 264095 149 + 778964 GAGGTTGAAATTAAAAGAAAATCAGATACTG---TCTTCTGGCATTAAATATTCCAG-TGCTGTGCATTATATTTAGAATCATATGTATATGCCTCATCTCAGCCTATGTGGTGGGCACCCCCAACAAAG---TCTCACAACAACACT-AAGTTGTG s panTro1.chrUn_random 63515435 153 + 240967748 GAGGTTGAAATCAAAAGAAAATCAGATACTG---TCTTCTGGCATTAAATATTCCAG-TGCTGTGCATTATATTTAGAATCATATGTATATGCCTCATCTCAGCCTATGTGGTGGGTGCCCCAAACAAAGGTCTCTCACAACAACACTTAAGTTGTG s canFam1.chr34 29648943 153 - 45232793 GAGGTGAAAATGCTCCAAGATGCAGACATTGTCATCTTCTGTAATAAAACCGTCCAATTGTTTCCTGTTATATTTAGAATGAGATCTAGTTGCCTCGTTTTGGTCTCTGGGTGCTGCAagcttcacaatg---gctcccagcgatcct-gacctgtg a score=79771.0 s hg17.chr7_random 264244 955 + 778964 AGTGACTCTGTTATTTTAAAACGCAGCTCACCTCTCAGTGCCTCAGAAGCAGGTACTATAACACCGGGTTTctaacagagagatgggattccagctcaagtctgtttccctgtgcttacttaaaggtagtaatattctcagaaaggtttaggaggtaggttctggattagtacggaattgcttaaaggaaaaatgtatggaaaatcactgggcatgaacaactattttttcttgctacacacagatcacatgtgcaaatttggggacagttagtacaaaacatgtgatggaaatttgggctctgacatcagtgagcttatttcacacagactccagttgaccatattggttccgaccaattttagccactttttagaagtctcataagtggaataaatttcattctttcaacaagttgtatcttttcttatctgtcattctgcaaactgaagaatttctgttagtcattggatgaactctttggggACCTGGTTCTAGTTTCTGTCAAAGGGAAAACAACAAATGTGATAGGTTATCACTTCTGACTTAgttcagacttctataccaaaaaacatagactaggcaacttataaataaaaaacattagttctagaggccagaaatttgagattgggcttccagcatggttggggtctggtaaggactctcttctgagtttcaaactccagacttcaggttgttttctcatttagcagagagagggagagacagccttctgcggtttcttttacaaagcccgtaatcgctatcatgaggtcctcatgcttcggacttaattacctctgacctgctaaggccattacactggggattaaggttctggtatgtgaacatggtggggaatcacaTAGTCTTCTGCAACTTCCAAAGTTATATTTCTAAAACAGCTATTATTTTCCTCTTACTTGCT-CTGTCCTGTGTGTCctctctcaat s panTro1.chrUn_random 63515588 953 + 240967748 AGTGACTCTGTTATTTAAAAACGCAGCTCACCGCTCAGTGCCTCAGAAGCCGGTACTATAACACCGGGTTTccaacaaagacattggattccagctgaagcctctttccctgtgcttacttaaaggtagtaatattctcagaaaggtttaggaggtggcttcttgtttagcagggaattgctgaaaggaaaaatgtatggaaagtcattgggcatgaacagccatcttttcttgctacacacaggtca--tgtacaaatttggggacagttagtacaaaacatgtgatggaaatttgggctcttacatcagtgagcttatttcacacagactccagttgaccatattggttccgaccaattttagccactttttagaagtctcataagtggaataaatttcagtcttttgacaagttctatcttttcttatctgtcattctgcaaactgaagaatttctgctagtcattggttgaactctttggggacctggttctagtttctgtcaaagagaatacaacaaatgtgataggttatcacttctgACTTAAttcagacttctataccaaaaaacatagactaggcaacttataaacaaaagactttagttctggaggctagaaatttgagattgg-cttccagcatggttggggtctggtaaggactctcttctgagtttcaaactccagacttcaggttgttttctcatttagcagagagagggagagacagccttctgcggtttcttttacaaagccagtaatctctatcacgagggcctcatgcttaggacttaattacctctgacctgctaaggccattacactggggattaaggttctggaatgtgaatatggtggggaatcacaTAGTCTACTGCAACTTCCAAAGTTATATTTCTAAAACAGCTATTATTTTCCTCCCACTTGCTtctctcctgtgtttcgtctctcaat a score=24518.0 s hg17.chr7_random 265199 239 + 778964 ctctctgtctccctttctctctttttctctgcatatgtctgtctatctctttcatttttcatctctGTATTGTAATCCTCAAGATGAggaagtgatctgcag-tgtcctaagatgctctaggcacaga-cccacatgatagagaactgaggagatgcccaggccaatcgagaggaaggaactcgggctctcagttcacactgaatcgtgccagtttccatgaggcagatagaaggctgatc s panTro1.chrUn_random 63516541 237 + 240967748 ctctctgtctccctttctct--ttttctgtgcatatgtctgtctatctctttcattttccatctttctATTGTATTCTTCAAGATGAgggagcgatctccag-tgtcctaagatgctctaggcacaga-cccatatgatagagaactgaggaactgcccaggccaatcaacaggaagaaactggggttctcagttcacactgaatcttgccaatttccatgaggcagattggaggctgatc s canFam1.chr6 3071421 206 + 79106041 ctctcatgtttcccttctct--tttcc----------tccctttcccttttactttctctatccctgaacctaaat--tcaag--------------tacagatgttttcagctgccat----atagagctcacatggcagagaaccaaggcagtgccaaggccaaaagacacacagaaactcaggctctgagtccaaatggcatctgg---aatcatgtgagcaaacttgggagaaaatc a score=91.0 s hg17.chr7_random 265438 1 + 778964 t s panTro1.chrUn_random 63516778 1 + 240967748 t a score=81762.0 s hg17.chr7_random 265439 734 + 778964 ctcctcaaatccagcttcagttgaaatcacagccccagcctcgtaagagaccttgaggcagaggcacccaactaagctatatcgagatt-ctggttcacaaaagttgtgagata------gtatttgttgtcaacatgtgctaaaattcagggaaattttgtcagagaggggcaa---atgactaatCTCCTCTTTCAGTCCCCAGGATC-----------CTCCCTCCCC---TCTTTTCCTTTCTTTCTCAGGCTGCCTGCCGCCACAATTGTCCCGTTATAACCTCCTCTGCTGAACTCACCTGTGCCTGTGAGTCTCTTCACAAAGAGTGGCTTTTCCCTGACACACTTTGCAC--ACCTGCGCAGGACTGGCTCTCTGTTGTCATTCTGGTCACAACATAATGTCA-CCTCAGGGAGGCATTCATGTCCCCTCCAGGCAACCTCTCCCCAGCCCTCCCTCCCAACATTCTACTTTATTTCCATTATAAAA--TGCTCTTTTCTTTCACATGTACTTGCTTTAGTGTTTTTGTCCTGCCGTCCTCAGACTGTGGGCTCCCCGCGGGGAGGCAGGGATAACATAATCATTTTTGGTACCATAAGGTGAACCTACCAAGGTAGCTGCCACATGGTGAGTGCTAGGGGAAGAGTCGCTGAGTAAAATAACATGGAAAATCACAAAGCC--CTTCTTCCCACTTTTGGCCACCCAATAATGTGGAGATCATGAA-TGATAACAGGAGCTGCAG------------------------------GACCTCAGCCTGT s panTro1.chrUn_random 63516779 719 + 240967748 ctccccaaatccagcttcagttgaaatcacagccccagcctcataggggaccttgaggcagaggcacccaactaagctatatcgagatt-ctggttcacaaaaattgtgagata------gtatttgttgtcaaaatgtgctaaaattcagggcagtgttgtcaGAGACAGGCAA---ATGACTAACCTCCTCTTTCAGGCCCCAGGATA-----------CACCCTCCGC---TCTCTTCCTTTCTTTCTCAGGCTGCCTGCCGCCACACTTGCCCCTTTACAACCTCCTCTGCTAAACTGACTTGTGCCTCTGAGTCTTTTCACAAAGAGTGGCTTTTCCCTGACACACTTTCTAC--ACCTGCGCAG-------------TTGTCATTCTGGTCACAACATAATGTCA-GCTCAGTGAGGTATTCATGTCCCCTCCAGGCAACCTCTCCCCAGCCCTCCCTCCCAACATTCTACTTTATTTCCATTATAAAA--TGCTCTTTTCTTTCGCATGTACTTGCTTTAGTGTTTTTGTCCTGCAGTCCTCAGAGTGTAGGCTCCCCGCGGGGATGCAGGGATAACATAATCGTTTTTGGTACCACATGGTGAACCTACCAAGGTAGCTGCCACAGGGTGAGTGCTAGGCGAAGAGCCGCTGAGTAAAATAACATGGAAAATCACAAAGTC--CTTCCT---GCTTTCGGTCACCCACTAATGTGGAGATCAAGAAATGATAACAGGAGCTGCAG------------------------------GCCCTCAGCCTGT s canFam1.chr34 29649376 755 - 45232793 ctctgctaggctagcctcccatgaggtcacagctgcaacctc-tgatgtaccttgaggttgaggaaccaagctaatttgtgtctggattcctcatccacaaaaccgatgagaaattaaatatatgaattgt---aagatgcaaggtgtcggggcaacacagtaacagaggaacaatagatagctaacaG--TCTACCAGGCCTCAGCAtcgctgccctcttccctctcctcagatctcctcctcctttcctca------cagccgcgctggctgcccattt--cacctcctctggccaacccagct---tctgttagtatctgcatcaggggtcccttcttcctgacacactgtccccagacgcgtgtagatctaactcccttttgttattctgttctcagc--aatgtcaccctcagtgagaccttttatacctttctctccaatgatttcccaaccttccttcccggcatacagtcttgtgtagaatatagcacttgctcttttctttcacgtgtctttgtttttgtgcttttgtcc----acctccagactgtgagttcct-----acaggcaggaac-tcatggt-attttcagctccatcc-atgggcccaccaaggtacctggcatagggtgagtacttagtgcctagttatggaatgaatcaatG-AGAAGTTCTTGGAACCCACTTCCC----CTTTCAGCCATCTAG-ACTGAAGGGA----GAAATGCCACTAAGAGTTTCAAGTTGTCTCTGGGCAGGGGGATGACCACAATGACCTCTGCATGA a score=51723.0 s hg17.chr7_random 266173 399 + 778964 CTCTCCCCCG-GCTCCAGCTGCTCCAGTAAAG---CCCAGCGGGCATAAGAAACACGGGGTCTGCCGCCACCTAGAGGCCTCCACTAGCCCTGAAGTCCCAGGTGGAAGCATC------ACAAAACA---GGCACCTGCATTGGGGAATTCTCAAGGCAGTGGCTATTCAAGGACCC--CTGGGAAAAGGAGCAGTATCTGAAGACTCCAAGGGCCATAAAAGTAACCTCGGAAACCTCCC-TTGATTCCTATTTTCCTCAGCCTCTTTGAGTGTGCT-GTGCACTCATTAAACACTTTAACAGCATTCAGA-----GACATTATTT-TCTTCCACT----TCTGAATGAGGACCTCAAGGACAGCCCAAAAATCTAGTATTTTTTCTGGGCCCCACACTCCAGAGCCCAGTGCATTGTCACATTC s panTro1.chrUn_random 63517498 401 + 240967748 CTCTCCCCCCTGCTCCAGCTACTCCAGTAAAG---CCTAGCGGGCACAAGAAACACATGGTCTGCCGCCACCTAGAGACCTTCACTAGCACTGTAGTCCCAGGCAGAAGCATC------ACAAAACA---GGTACCAGCATTGGGGAATTCTCAAGGCAGTGGCTATTCAGGGACCC--CTGGGAAAGGGAGCAGTATCTGAAGGCTCCAAGGGCCATAAAAGTGACCTCGGAAGCCTCCC-TTGATTCCTATTTTCCTCAGCCTCTTTGGGTGTGCT-GTGCACTCATTAAACATTTTAACAGCATTCGGGC----GACATTATTT-TCTTCCACT----TCCGAATGAGGACCTCAAGGACAGCCCAAAAAACTAGTATTTTTTATGGGCCCCACACTCCAGAGCCCAGTGCATTGTCACATTC s rn3.chr3 163471247 388 - 170969371 CTCTGCTCCC-CCTCAAGTTGCTCCATT-------------GAGTACAAG-GACA------CTGCTGCCCCCCAGTGGCCAGTACCGACACTACAGCCCCCAGGCAAGGAACCCTGAAAACAAAACA---CAACCTTTTGTTTGCGTGTTGTCAAGGTAGCAAGTCTCCCAGGCCCCAGCTGGGCAAAGGAACAGGACCTGTAGGTTTCAGGGGTTACCACAAAGACCTCAGAAGCCTCAT-TTCTCCCCTCTTTCCTTCTGATGCCTCTGGGGCTCTGGCTCACTCAGGAGGCCTCCT-----CTTTCAGTCTAG-GAAATGACTCGGACCCCATT----TCCAAATAAGAACCACACATTCTAACGAGGGTGGTGGTCTTGTCCCTGGACCCTGGA-GGAATGGTCTAGAGTTTTGTCTC--CC s canFam1.chr34 29650131 405 - 45232793 --GTCTTTCC-TCTGCAGTTCCTCCCGCAGAAGTCCCTAGTTACCATTGCAAAGG--AGGTTTCCTGCATCGTGTTCTCCAGCTCTAGCAATACAGCCCCAGGCAGGCACACC------ACCAAAGAAAGGACAGCTTTATTTGGGTGTCCTCAAGGCAGTGGCTTTCCAGAATCAC--AGGGGCAAAGGAACAGGACCTATGGGCTCCAAGGCAGAGTAAAG-GACCTCAGAATCCTCCCTTTCATTCCTTTCCTGTTCTCTCCATTGGTGTCTACT-TTACAAATACGGAACCTCACCTCAGC---CAGAAGAGTGACCCTGCTC-TCACCCATGCCTATCTAAATGAGGATCCTGAAGGCC-TTGTGGAGACTGGTCTTGTCCCTGGACCCCAGA-TGCAGTGTACAGTGCTCTggcattttc a score=50891.0 s hg17.chr7_random 266572 474 + 778964 TGCTTTATTCCAAGTCCTCATCTGCCCACATCTCTAGGC----CTCTCTCTTCTCTGAAGGACCTCTAGAACCTGAAAAGCCTCTTCCCAGAGTCTCAAAGCACAGTGAGTTACCAATGAAGAGCCAAGGGGAGCAGACA-CTTATGAGTATCTAGAATTCTT--------GGTATTATTCC---TTTTGAGTACCCCTATTTATGAGAGAGAAAACGAAGGTTTTCTTTCCCGTAGCCTCACTTTATATCACATGGGGTGGTTGGGGGAGGGCATA-GCTCATTTTAGTTCCAGGTGCCCATAGAGGTGGGAGTCACAACCCCTGTCC-TGTCCTCTTGAAACAGCTGGGAAGATCCCCAGGCCTGGAAGAACCCAGGGAACCTGGAGGATCCTT-------CATCACATGCTGT--------CAGCTCCTGGTCATGTAGCTGGGGGAGTGGATGCCTCTGCCTCATGGCAAAGCTGCCTCTT--CTATTTCTTCCCGTTTTGTCAC s panTro1.chrUn_random 63517899 474 + 240967748 TGCTTTATTCCAAATCCTCATCCGCCCAAGTCTCTAGGC----CTCTCTCTTCTCTGAAGGACCTCTAGAAACTGAAAAGCCTCTTCCCAGAGTCTCAAAGCACAGTGAGTTACCAATGAAAAGCCAAGGGCAGCAGACA-CCTATGAGTATCTAGAATCCTT--------GGTATTATTCC---TTCTGAGTACCCCTATTTATGAGGGAGAAAACAAAGGCTTTCTTTCCCGTAGCCTCTCTTTATATCACACGGGGTGGTGGGTGGTGGGCATA-GCTCATTTTAGTTCCAGGTGCCCACAGAAGTGGGAGTCACAACCCCTGTCC-TGTCCTCTTGAAACAGCTGGGAAGGTCCCCAGGCTTGGAAGAACCCAGGGAACCTGGAGGATCCTT-------CATCGCATGCTGT--------CAGCTCCTGGTCATGTAGCTGGGGGAGTGGATGCTTCTGCCTCATGGCAAAGCTGCATCTA--CTGTTTCTTCCCCTTTTGTCAC s rn3.chr3 163471635 418 - 170969371 TGAGTTACCCTGGCCTTTAAGTCACTCAAACCCTAAGGCCACTCGCTCTCTGCTCACCAAGTCCACCAGGG---GGAAGGCATTTTCCTAGAATTCTTA-------TGGGT---CATTGAAGGACCAAAGCCAAAAGACATTCCACAAGCCCCTGGAACGCCCCCGGGGAGGGGGCGGTCCCAAAGGCTAAGCATCCTAACGTGCAAAGGAGGAAACTGAGGTCTCCT---CCGCAGCCTC-CTTCACACTA----------------------------------------------------------------AAGACCTCCGCCC-TGCCCTCCAGGCTAGTCTGAGGATGGTCCCTGACAAGCA--GACCCTGGGAATCT-TAGCATCTCTCTGTCCACAGCGCCTGCCGTACAATAGGCACCCCC----AATGTTGCTAGGAGACTGGACGCCTCAGCCCCAAGACAGAGCTGCCTCCT--GCCTCTTCTTCCACCTCACCAC s canFam1.chr10 37329694 430 + 72717409 CTCTCCACCCAAACTCCTCATTTGC-CAAGCTCCAATG-----TTCCCTTTTCTCTGAAAAACTCATGGAG--TGGAAAGCATTTGTCCATGTTCTCAGAGAACAATGAGCTTTTGGTTCTGAACTAAGGTCTAAAAAC--TTTCCAAACAGACATAATCCTT--------GTGGTCAGACA---CATCAAGTACACAT-TTTGTAGTGTAGGAAACTGAG---TCCTTTCCTATAGCCCCTGTCTACACTG----------------AAGGATATGTGCCC-----AGTTTCAGGAGCCGAGAGCTGTCGACATTAGGAGCCCTGGCCTTATCCTCTGGAGACTACTGGGA------TATGGCCAGGCAGGGCTATGGGGACTTTGAGAGTCCCT----------CTCATGCTGT--------GGACCTCTAGATGTATCACCAGGAGAATAGATGCCCCTTGTCTG---------TGCCTCCAACTTCTTTCTTCTTTTTTTGTCCC a score=41808.0 s hg17.chr7_random 267046 483 + 778964 TTCTCTGGTTTCCTCT-TCTCTAACCTCAC--------CTCCAT----GATCTCCACCTT---AGAAGCC----tgtgtgtgtgtgtgtgtgtgtgtggtgtgtttgtgtgtTCATGGCTGCACACCTATGTGAGAATAAGGAAGGGTAGAA-AGCCCAGGTAGAAAGTAG-ACCACAGGGTTTTCCAGGA-CTTAAGAGCACTCATTTCCAAAGCAAACCTGATGGGTGGGGTGCATGCAAGGCCTTGGAAGCTGGATCCCT-CCCTAATA-CTCTGTGCTCTTCCC-AATTTCT-GGGATATGGACCAGTCTTTGCCTTTTTTGGGGGCCTCAGTCTTCCTGTTGTAAAATGGATAGGTGGTC-ACAAAACTGCATAAACACATGCTCAGTGAAGACAGGGTGTCATGCTCAATACCAGATAGAATATTGGGATGGGGAG--AGTTTGAGCAGACTTTTGTGTCCACGGTAGCTCAGGCCTC--TGAACAGGGCAAATGCAGGTGAACATAAA s panTro1.chrUn_random 63518373 504 + 240967748 TTCTTTGGTTTCCTCT-TCCCTAACCCCACTTTAGAATCTCCACTTTAGATCTCCACTTT---AGAAGCCtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgtgtttgtgtgtgCATGCCTGCATGCCTACATGACAACATTGAAGAGTAGAA-AGCCCAGGTAGAAAGTAG-AGCACAGGGTTTTCCAGGA-CTCAGGGGCTCTCATTTCCAAAGCAAACCTGATGGGTGGGGTGCATGCAAGGCCTAGGAAGATGGATCCCTCCCCTAATACCTCTGTGCTCTTCCCAAATTTCTGGGGATAtggaccagtcttttccttttttgggggcctcagtcttcctgttgtaaaatgaagagttgggctaCAAAACTGTATGAGCACATGCTCAGTGAAGACAGGGTGTCATGCTCAATACCACAGAGAATATTGGGATGGGGAA--AGTTTGGGCAGACTTAGGTGTGCACGCATGCTCAGGACTC--TGAACAGGGCCAATGCAGGCGAACATAAA s canFam1.chr10 37330124 453 + 72717409 TTGCAGGGATTCTGCTCTCCTTAACCATCC--------CTCAAT-----GTCTCCAACTGTGAAAAAGTC----TGTTTCCATTTGTGTATGC---CCATGTACTTCTGGGG------------------ATGA-------GGTGAGTAAAATGGCCCATATTGGAAGGGGTTGTGCAAGGATAACAAGGATCTTAGGGACTCTAGTTTCCAAAGTAAATGTGCTGAGAGGGTTGAACTCTGTTCTAAGGAAGCCAAAGTAGT--CACATTTCTTCTGGGATCTTCCT-ATGTACT-GAGACCTGGACCATCCCTG--CTTCTTTTAGGGCCTCTGACTCCCAGATGTATAA-AGAGCGTTGGGATGTGGAACTGTGAAAGTATGTGCACAG-GAGGATATGATCTCTGGCTCCATCC---------TCACTGGATGGGGTGTTCGTTTGGGTGGCCTCTGGCAGGCACAGGTATACAAGTCTCCTCTAACATGGCTAAAGTGGCTGGACATGGA a score=19881.0 s hg17.chr7_random 267529 254 + 778964 GCACGGCACAGCCAGGTTTTCTTACCAGGGCTACGGGATGAAACAGTGCACCACAGGCTCTGTTCTGGAGGCTGGTCCCGCAAGATTTTCCCTCCTTCAACCAGCAACTGTTTGATGAATTTCATGTCCTGTGAAGCCCATATCCACCCCCATTACAGTGAGGGGCACAGGGCACTAGACCTGTAAAATAATGTCTTTTGCCtttttttcttttcttttctttttctttttctttatctttttcttttAACTGA s panTro1.chrUn_random 63518877 245 + 240967748 GCATGGCACAGCCAGGTTTTCTTTCCAGGGCTACAGGATGAAACAGTGCACCACAGGATCTGCTCTTGAGGTCGCTCCGGCAAGATTTTCCCACCTTCAACCAGCAACTGTTTGATGAATTTCATGTCCTGTGAAGCCCATATCCACCCCCATTACAGTGAGGGGCACAGGGCACTAGACCTGTAAAATAATGTCTTTTGCC-TTttttcttttcttttctttttcttt-------tcttttt-ttttAACTGA a score=8194.0 s hg17.chr7_random 267783 46 + 778964 GTGGCTGTTTCTTCTTTCTCTTTTTCTGTTTTGTTTGTTTTTTAAC s panTro1.chrUn_random 63519122 46 + 240967748 GTGGATGTTTCTTCTTTCTCTTTTTCTGTTTTGTTTGTTTTTTAAC s rn3.chr1 71310949 46 + 268121971 GTGCCTATTCTTATTTTAACTTTTTCTGTACTCTTAGTTTTTTAAC a score=163849.0 s hg17.chr7_random 267829 2005 + 778964 TAATTTTTAAGAGGTCTTTACAggtcagctgtggtgcctcacatctgtaatttcaacac-ttgagaggctgaggcgg--gcggatcatttgaggtcaggagttaaaaaccagcctggccaacctggtgaaaccccgtctctactaaaattac-aaaaaattagccgggaatggtggcacaagcctgtagccccagctactcaggaggctgagacagaagaattgctgaaacttgggaggcagaggttgcagtgagccgagattgcacgactgcactcaagacatggtgacagagttagtctctgtggaaaaaaaaaaagagagagagagggagagagagagTGCCCTTTATGGAAATGCGAGCCCCTTTGTAATTTCATGAGTTGTAAATATTTATTCCAATTTGGGAAtttcttttcttattgtggtgttctctttaagtttgttttggatgttattagtgttttgttttgctttgtttCTATGTAACTTctccctaaattgattcatagatttccattttcacaatacaatattttggcagaaatcttgtgg-aaactgtctaatcagtttaaaaaatttaaatacatat-aaaaaatcgaagaaatgtaaaaactgtcctgaagaataacaaagtttgtgagcttaaaatgacatatattcagacttagattaaagctatagtaataaaagctatctatggtagtaatgcaaaaataggcacaaagaaaactagaaaaactcgagagtccaactcagactcacacatttggacattctgtatattacaaaaaaggcacagaaga-----ggagtgaagacagtcttctcggtaaatagccttgagtcaaccagttatttatgtgagaaa-----aaacactcctatcttatattattaacaaattccaatgaaaagtggattttaaattttaaggtcaaagctgaaaacaatatttctagtagataacatagataaatatgtccatgac--tggcacaggcccagatttctcgggacacaaaatgcattaattctcaagagaaaaatatgacaaattggactttattagaattaaaaccttctcttcataaaaaaaaagcttcaggagagctgaaaggcaagaacaaagtggaaatcaacatttgtcatatatttatgtggcaaaagacttttatctagtttatttaactaaatcccatcaattaataaacaaagatgcatacattgaacaaaattggcaaacatgtgactaggagttccacatacagaaccgaagggccaacaagtagatgaacacatccacatccttatgcatcagagcaatgcatatgaaaactacaattgaataccactatgcaatcattaacatttttgaaaactgacaaaattaagtactagtgatgat-gtcaagcaactggaactttcttataccattctgtgtgcaaactgttataacggcattcaaaacctcttgagtagtaactccttacatacacgatgtacataagcacactctaggacccagaaactctgctactaggtatatacacccaatagaaatgccagcatattttccaatgcagaaaaatgctctaagcagcattatttggtacttttccaaactgaaaaaaactcaaatgtgcatcaataataaaataactaaataaaacagctacatattcctttataaggggacattatacagatataaaattaattggagacatattaaaatatacaaaaatctaacaaatacaatTTAATTAGATTtaaaagtcctatccacagcaatcagccaatagaaaagaaaaaggcatacaaatagaaaaaaaaattgaattctctttctccatttgcaatatgagtcactatgcagacaatgctaaagtctttccaaaactccttttggagaaaacttgaaaagcctcctgaaatggataagcaagtaaagttttaggacacaaaaccaatgtagaaaaaccagtagtatttctatgcatcaacaacTTTGAATTCCTGA s panTro1.chrUn_random 63519168 2017 + 240967748 TAATTTTTAAGAGGTCTTTACAggtcagctgtggtgcctcgcacctgtaatttcaacactttgggaggatgaggcagcagtggattatttgaggtcaggagttcaaaatcagcctggcgaacctggtgaaaatccatctctactaaacttacaaaaaaattagccgggaatggtggcacaagcctgtagccccagctactcaggaggctgagacagaagaattgctgaaacttgggaggcagaggttgcagtgagccgagattgcacgactgcgctccagactgggtgacagagtgagtctctgtaaaaaaaaaaaaaaagagagagagagagagagagagTGCTCTTTATGGAAACGTGAGCCCCTTTGTAATTTCATGTGTTGAAAATATTTATTCCAATTTTGGAATTTCTTTTCTTATTGTGGTGTTCTCTTTAAGTTTGATTTGGATGTTATTAGTGTTTTGTTTTGCTTTGTTTCTatgtaagttctccccaaattgatttatagatttccattttcacaatacaatattttggcagaaatcttgtggaaaactgtctaatcagtttaaaaaa-ttaaatacatataaaaaaatcaaagaattgtaaaaactgtcctgaagaatgacaaagtttgtgagcttacagtgccataaattcagacttagattaaagctatagtaataaaagctatctatgataataatgcaaaaataggcacaaagaaaactagaaaaactcgagagtccaactcagactcacacatttagacattttgtatattacaaaacaggcacagaagagcagtggagagaagacag-catctcggtaattagccttgggtcaactggttatttatgtcagaaagaaataaa----cctatcttatattgttaacaaatttcaa-gacaagtggattttaaattttaaggagaagattgaaaacaatatttctagtagataacatagataaatatgtccatgactttggcacaggccaagatttcttgggacacaaaatgcataaattatcaagacaaaaatatgacaaattggactttattagaattaaaaccttctcttcattaaaaaaaagcttcaggagagctgaaaggcaagaacaaagtggaaatcaacatttgtcatatattgatgtggtaaaagctttttatctagattattaagctaaatcccatcacttaataaacaaagatgcatacattgaacaaaattggcaaagatatgactaggagttccacatacagaacagaagggccaacaagtagatgaacatatccacatccttatgcatcagaacaatgcatatgaaaactacaattgaataccactatgcaatcattaacatttttgaaaactgacaaaattaagtactagtgatgatagtcaagcaactggaactttcttataccattctgtgtgtaaactgttataactacattcaaaaccacttgagtagtatctccttacatacacaatgtatgtaagcacactctagaacccagcaactctgctactaggtatatacacccaatagaattgccagcatattttccaatgtagtaaagtgctcgaagcagcattatttggtacttttccaaactgaaaaaaactcaaatgtgcatcaataataaaataaataactaaaacagctacttattcctttataaggggacattatacagatataaaattaattggagacatattaaaatatacaaaaatctaacaaatacaatTTAATTAGATTtaaaagtcctatccacagcaatcagccaatagaaaagaaaaaggcatacaaatagaaaaaaaaattgaattctctttctccatttgcaatatgagtcactacatagagaatgctaaagcctctccaaaactacttttggggaaaacttgaaaagcctcctgaaatggataagcaagtaaagttttaggacacaaaaccaatgtacaaaaatcagtagcatttctatgcatcaacaacTTTGAATTCCTGA a score=6238.0 s hg17.chr7_random 269834 51 + 778964 ACATCTTC-AGGTTTTATTGCATTTTCAATTTTTTCCCTCCATTAACTATAC s panTro1.chrUn_random 63521185 48 + 240967748 ACATCT----GGTTTTATTGCATTTTCAATTTCTTCCCTCAGTTAACTATAC s canFam1.chr11 56025582 52 + 75769841 ACATGTCCTAGTTTTTACTGTGGTTTTCACCCCTTCCCTCGGTTATCGACAC a score=0.0 s hg17.chr7_random 269885 1 + 778964 A a score=-339.0 s hg17.chr7_random 269885 1 + 778964 A- s panTro1.chrUn_random 63521233 2 + 240967748 AT a score=22015.0 s hg17.chr7_random 269886 105 + 778964 TTTTTTCTTTTTTCAGCTAAACTAATTTATTCTTCTGTATAATTTCACCTTGTTAATAAACCCCA-GGCCAAA-AAGTGGGAATAAA--GTATTTGTCTGCATCCTGTT s panTro1.chrUn_random 63521235 106 + 240967748 TTTTTTCTTTTTTCAGCTAAACTAATTTATTCTTCTGTATAATTTCACCTTGTAAATAAACCCCA-GGCCAAAGAAGTGAGAATAAA--GTATTTGTCTGCATCCTGTT s mm5.chr4 45134494 94 + 154141344 TTTCTTTTCTTTTCAGCTAAAATGAATCCTGTCTTTATTTTACTTCACCCTG--------------GACCAAA-CAATGAGTCTAAAAGGGTTTTGTATTCATCTCTTT s canFam1.chr11 56025634 97 + 75769841 TTTCCTCTTTTTCCAGCTAAAATTAATT---------CAATATTTCACCTTGTTAATAAAACCCAGGACCAAA-AAAGGGGAATAAA--AGGGTTTTCTACTCACTGTT a score=93071.0 s hg17.chr7_random 269991 806 + 778964 TC-CTCATTTTGAAAACTAGTCTAGATGAAACCTATACTTGTTCTAGGGAGTTGGCATAGACAGCATTTATTTCCATTCTCTGCAGGGATGCCAGCCAGAAAGAGGGAGTT--------------------------------------------------------------CCGCATTTTCA-CTTTGGTTAGACAGGACTCTGGATGGTTGTAGGGGAAAAGATCCAAACTCTAAGGGAGTCAAATC-AGACATTGCAAAGATTTATACATTTACTCTGGGAGCAATTATTGTGT-TAAATTTTGTGCAAAACACTGCGCAAACAGCAATTAAAG-----TGAAAATTATTAAGGCATTACCTTTACCTTGGGAAACTCACACTAGTCAGATTCTCCGAACCCCAGAACATAACAACAACC-TAGTAAAATCTTGTTCAGAGTGAAGAGAGGGTGGG-AG--------------------CAGGAAGGTAAGGTTAAAAATTAGGCTGGGTGAATGAGATAATTACCCCTAGTCAAGCAGTGGAAGTATGGATGGCTTTGGGATGGGTGAAGACAAAAGAATCTCAGCAGAGGGTGCAGATAAAAAAAGGCAGAAACAC------AGGAGGCTTATGCAGGAAGAGGAATGAGTTTGCTGGACTGGGGAGAGTGACAGTAAAAAGCAGAGGATAATAGGCATCTCTGGTCATCTAGGGACTATAGGGTGGATTAGTTGGGGGTTACAGAATCAGTGAGGTACTTTTTAACAGTAGGATGGGTAAATAAGAGCTATAATTTGGAATAATTATGTAGCAA-TGGTGGTTAGGAGCAATA--GAAACTCAAAGTATTACATAAATAT-TTTTTTTCTTATTCTCCCACACAAGCGTTTTGCCT-------------TTCCTC s panTro1.chrUn_random 63521341 828 + 240967748 TCACTCATTTTGAAAACTAGCCTAGATGAAATCTATACTTGTTCTAGGGAGTTGGCATAGACAGCATTTATTTCCGTTCTCAGCAGTGATGCCAGCGAG-AAGATGGAGTT--------------------------------------------------------------CCCCATTTTCA-CTTTGGTTAGACAGGACTCTGGATGGTTGTAGGGGAAAAGTTCCAGACTCTAAGGGAGCCAAATA-GGACATTGCAAAGATTTATGCGTTTACTCCGGGAGTAATTATTGTGT-TAAATTTTGTGCAAAACACTGCGCAAAGAGCAACTAAAG-----TGAAAATTATTAAGTCATTACCTTTACCTTGGGAAACTCACACTAGTCAGATTCTCCGAACCCCAGAAATTAACAGCAACA-TAGTAAAATCTTGTTCAGAGTGAAGAGAGGGTGAATAGCAACATAGTAAAATCTTGCTCAGGAAGGTAAGTTTAAAAATTAGGCTGGGTGAATGAGATAATTACCCCTAGTAATGCAGTGGAAGTATGGATGTCTTTGGGATGGGTGAAGACAAAAGAATCTCAGCAGAGAGTGCAGATAATAAAGGGCAGAAACCC------AGGAGGCTTATGCAGAAAGAGGTATGAGTTTGCTGGACTGGGGAGAGTGACAGTAAAAAGCAGAGGATAGTAGGCATCTCTGGTCATCTAGGGACTATAGGGTGGATTAGTTGGGGGTTACAGAATCAGTGAGGTACTTTTGAACAGTAGGATGGATAAAGAAGAGGTATATTTTGGAATAATTATGTAGCAA-TGGTGGTTAGGAGCAATA--GAAACTCAAAGTGTTACATAAATATGTTTTTTTCTTATTCTCCCACACAAGCCTTTCACCT-------------TCCCTC s canFam1.chr11 56025731 860 + 75769841 TT-TTAATTTCTGAAACTAGTCTGGATGGAATGATCACTTGCTGTAGGAAGTTGTAATAGGGTGCATTTACTAGCAATTGGGACAGAGATCTCTGCTAA-GGGGAGGAATTTTCTTGGAAGTTAGGTACCTCACAAAGCGCAGAAAACCTTCAAGTCAGGTTCAGCGATAACCCCGTGTTGTCAGGTCTGGCCATGTAGGACTCTGGCTGGCTGTGTGGGAAAGGG-ACAAACTCTAGGAGTGTCAGATCAGGACATTCCAGCTATGCATGCATTTACCCAGGGAATAGTCACTGTGTCTGAACCACGTGCAAGATGCTGTGCGAAGGGCAACTGAAGCTGAATCAGAATTAGTGACCATATACCTGCCCTTCAGGAAACACCTACT--CTGGATGTTCTGAACTCCGGTATTTGCCAGCAACCACCATACACGCACATCCAGAGACAGGAGAGG------GG--------------------CCAGGGGGTGAGGGAAG---------TGAGTGGCCGGGACACTTGCCACTGGT-----AGTGGAAGGCTGGCTGGGTCTGGGATGTGTGGATGC----------CAGCAGAGGAGCAGGGTGAGGGAGGCCGGGGGAGCAGGGCGAGGGGGCATATGCAGGAAGAGTGGAGAGTTGGCTGAAGCAGGAAGGGTCCGGGTGGGAACCAGACG--TGGGGGCCTCTGTGCTCATCTA-GGACTGGGAGTTGGACTTGGCAGGGGCTGCAGAGTTGGTGAGGGACTTCTGAGCCAGAGAGAGGGCAGGGCAGAGTGGTGG--TAGGAGGGCTATGGGGTAGTTAGTGGTGAGGAGGATGAATGGAACTCAGAGTTTTAGA-AAATAA-TCTTTTCATCCTAATTCCAGACAAGCCTGAGGCCTGAATTCTGAGCACTTCATC a score=17599.0 s hg17.chr7_random 270797 92 + 778964 TTAAACTGAGAACGGAGTGGTTTGCTATGATGT-TTTTAAATTCTCACAGACAAGCATTATTCTTTGC---TGCCTTTTAGTAAAGGTTAGTTTTA s panTro1.chrUn_random 63522169 92 + 240967748 TTAAACTGAGAAAGGAGTGGTTTGCTATGATGT-TTTTAAATTCTCACAGGCAAGCATTACTCTGTGC---TGCCTTTTAATAAAGGCTAATTTTA s mm5.chr4 45135062 93 + 154141344 TTAAAGTGGGAAAGATCTTATTTCTTTCAGTGTCTTTCAGATTCTTACAGGCAAGGGCCACTTTGTGC---TGCCTGCCTGCACAGGTTGATTTTA s canFam1.chr11 56026591 86 + 75769841 TTCAA----GAAGATGGTCTTTTTTAGAGATGC-ATTCAGCTTCTTACAGCCAAGCA-----CTGTGCTCATAGTTGACAGCACAGGTTGGTTTTA a score=13666.0 s hg17.chr7_random 270889 76 + 778964 ACCAAATTAAAGAAGATTGAATGGATTTTCTTGCTCATAATGGTTGAGTGCAATA-----TCTCATACCTTCTATTAGTTT s panTro1.chrUn_random 177427836 76 - 240967748 ACCAAATTAAAGAAGATTGAATGGATTTTCTTGCTCATAATGGGTGAGTATCACA-----TCTCATACCTTCTACTAGTTT s mm5.chr4 45135155 80 + 154141344 ACCCGTGCAACAATGAGAGACTGGA-TTCCTTGACCACAACAGTCAAGATCTGCACAGGCTTTCTAACCTCCTACTAGCTT s canFam1.chr11 56026677 75 + 75769841 ACCTA-GCAAAGCAGATGGGATGGATTTTCTTGACAACCATGGCTGGGAGTTACA-----GCTCCTGTTCTCTTTCAGTTT a score=4432.0 s hg17.chr7_random 270965 57 + 778964 TCAGTATAACTGAAA----------------TAACA---------------GAGTGTCAATACTCCATGGAGGGGTGCTCCGCTTGCT s panTro1.chrUn_random 177427912 57 - 240967748 TCAGTATAACTGAAG----------------TAACA---------------GAGTGTCAATACTCCATGGAGGGGTGCTCCTCTTGCT s mm5.chr4 45135235 87 + 154141344 TTGGGAACTTTTAAAGGGCGCTCCAAGGACCCAACATTAAAAAGAAGTGGTGAGTTTCACTACTCCACGT-GGGCCTCTGCTGTTGCT a score=4439.0 s hg17.chr7_random 271022 63 + 778964 AA-------GGCTCCC-------------TCCTCTG----GGCTAGGCCTTCT------------------------------ACACCATGGCTGTCCTGCT-------CTGGCTGGAGCTGGA s panTro1.chrUn_random 177427969 63 - 240967748 AA-------GGCTCCC-------------TCCTCTG----GGCTAGGCCTTCT------------------------------ACACCATGGGTGTCCTGCT-------GTGGCTGGAGCTGGA s mm5.chr4 45135322 123 + 154141344 GAGTGACCTGGCTCCCTGAGAAGGAAGTGTGCTCAGGGACGGCCACGCCCCCTCGTGTTGCCCCATCCCTCGCGTTGCCTAGGAAACCACAGC-GTCCTGCTGCAGTTGCTGGCTTCAGGGTGA s canFam1.chr11 56027109 61 + 75769841 GG-------GGCTCCC-------------CCCTCTG----CGTT--GCCTTGG------------------------------AGACCAAGTGCGTCCAGCT-------GCAGTTGAGGCTGGA a score=730.0 s hg17.chr7_random 271085 17 + 778964 ATTTGGATT-------------------------------GACCTCTG s panTro1.chrUn_random 177428032 17 - 240967748 ATTTGGATT-------------------------------GACCTCTG s mm5.chr4 45135445 48 + 154141344 ATCTGAACTTCAGATGCGGGAGCCTCCAGGCTTGGGTAAGGACCTCAA a score=655.0 s hg17.chr7_random 271102 12 + 778964 TGTGTCT--TCCTA s panTro1.chrUn_random 177428049 12 - 240967748 TGTGTCT--TCCTA s mm5.chr4 45135493 14 + 154141344 AATTGCTGGGCTTG s canFam1.chr11 56027344 12 + 75769841 TGGGTCT--TCTCA a score=36935.0 s hg17.chr7_random 271114 181 + 778964 GCACACAACAG---------------------------GTGTC-----CAATTAGCATGGG-CAGAATCAAGCTCCTCCCTCTCACCATTT-----ATTTCTCCATTTGTCCCTTGTTG-------GGAATGGAGAG--------------TCCTGCCACTGAGTTCAGCCCAGGGTTG-------------AAGTTCAAATCTCAGCTGATACTTGGTGGATGTTGACTTTTTTGAGAAGAACTTGGGAGAA s panTro1.chrUn_random 177428061 181 - 240967748 GCACACAATAA---------------------------GTGTC-----CAATTAGCATGGG-CAGAATCAAGCTCCTCCCTCTCACCATTT-----ATTTCTCCATTTGTCCCTTGTTG-------GGAAAGGAGAG--------------TCCTGCAACTGAGTTCAGCCCAGGGTTG-------------AAGTTCAAATCTCAGCTGATACTTGGTGGATGTTGACTTTTTTGAGAAGAACTTGGGAGAA s mm5.chr4 45135507 184 + 154141344 GGGGACAGCGGGCTGATTGAGCAGATAGGAAGATGGGCGTGTCGCAAACAGTAGGCATAGGCCAGAATCAAACTGCTCCTTCCC----TTTGCAACACTCCCCTATTTCTCCC------------------GGAGGA-----------------TGTGACTAGG------------------------------GTTCCAGTCCCATCTGACATCTGAGGCAGATTGACGGTCCCTAGAAGAGCTCTAGTGGA s rn3.chr5 62403897 151 + 173106704 GCAAACAGTCG---------------------------GCATC-----TAATTAGCGAGGC-CAGAATCAAACTTTTCCTTCCC----TTTGCAGCACTCCCCGATTTCTCCT------------------GGAGGA-----------------TGTGGCTGGG------------------------------GTTCCAGTCCTACCTAACGTCTTAGGCGGATTGACCATCCCCAGAAGAGCTCAAGTCGA s canFam1.chr11 56027356 215 + 75769841 GCATACAGTAG---------------------------GTGCC-----TAATTAGCATGGC-CAGAGTCAGGCTGCGCCCTCCCTCCGGTG-----CCCCCTCTCTGTGTCCACTCTTGGCGGGGAGTGGCGGAGGGGGCCCGGCAAGGGTCCTTGTAACCGCGTTGAGCTCCAGGTTGGGAGTTCAAGGCCAGGTTGAAATCCAAGCGGACACCTTGGGCATGCTGACTTTTCCCAGGAAAGCTTGGGACAG a score=802.0 s hg17.chr7_random 271295 8 + 778964 TAAAACAT s panTro1.chrUn_random 177428242 8 - 240967748 TAAAACAT s rn3.chr5 62404048 8 + 173106704 GCACAGAC s canFam1.chr11 56027571 8 + 75769841 TGAAGCAC a score=937.0 s hg17.chr7_random 271303 5 + 778964 TATAA s panTro1.chrUn_random 177428250 5 - 240967748 TATAA s rn3.chr5 62404056 5 + 173106704 AATAA a score=21876.0 s hg17.chr7_random 271308 254 + 778964 AGGCGCTggccaggcacggtgtctcatgcctgtattcctggcatattgattggctgaggagatagaattgcttgaggccaggaatttgataccagccttgtcaacatagtgagaccccatttatacaaaaaacttgaagcattaaaaacatttagccaggtgtgatagttccaaactgttgtctcagctatgctggatattgaggcaga-gatcacttgagccaggagttctaggctgcggtgaactatgatcac s panTro1.chrUn_random 177428255 255 - 240967748 AGGCGCTggccaggcacggtgtctcatgcctgtattcctggcatattgatgggctgaggagatagaattgcttgaggccaggaatttgataccagccttgtcaacatagcgagaccccatttatacaaaaaacttgaagcattaaaaaaatttagccagctgtgatagttccaaactgttgcctcagctatgctggacattgaggcagaggatcacttgagccaggagttctaggctacagggagctatgatcgt a score=3323.0 s hg17.chr7_random 271562 49 + 778964 gctactgcactccaaacagg-caaccacgcaagatgattcaaaaataaaa s panTro1.chrUn_random 63522265 50 + 240967748 GCTGCTGCAATCCAACCAGGGCAACCATGCAAGATGTTTCaaaaataaaa a score=1312.0 s hg17.chr7_random 271611 18 + 778964 TCTTTTATTATTCTTCAC--- s panTro1.chrUn_random 63522315 18 + 240967748 tattttattattCTTCAA--- s canFam1.chr11 56027589 18 + 75769841 ---TTTGTCATTCATCTCTGC a score=11113.0 s hg17.chr7_random 271629 48 + 778964 CCCTATAGTCTCTCCAGAACTTGTGCACTATGTAGCAGAAAGAATCAA s panTro1.chrUn_random 63522333 48 + 240967748 CCCTATAATCTCTCCAGAACTTGTGCACTATGTAGCAGAAAGAATCAA s rn3.chr5 62404072 48 + 173106704 CCAGAAAGTGTCTGTGGGATTTACGCCCTGTGCGCTAGAGAAAACCCA s canFam1.chr11 56027607 48 + 75769841 CCCCAAAGTCCCTCTGGGATTTGAACCCTGCGGGGCTGGAAGAGCCTG a score=5386.0 s hg17.chr7_random 271677 37 + 778964 ACTCCCCAAGAGTTTGGTTCTTGCTCATGATTTGGTT s panTro1.chrUn_random 63522381 37 + 240967748 ACTCCCCAAGAGTTTGGTTCTTGCTTATGATTTGGTT s canFam1.chr11 56027655 36 + 75769841 -CCTTCTCTGAATTCTGCTCTTGCCTGAGGTTTGTTT a score=1420.0 s hg17.chr7_random 271714 13 + 778964 ---TTCTGCTGCTTGG s panTro1.chrUn_random 63522418 13 + 240967748 ---TTCTGCTGCTTGG s mm5.chr4 45135780 13 + 154141344 ---TCCTGCTCCCCCG s canFam1.chr11 56027691 13 + 75769841 CCTTTTGGCTTCT--- a score=50529.0 s hg17.chr7_random 271727 429 + 778964 CTGCCCCGTCATGTCCCCATTTTGTATAAAATAAGAACCCC---------------------------------CCAGTGAAGTGGAGTTTCTCCCCAGCAGAGGGTCTCACCAAGGCCCCAAGACTGG-CA------------CTTTAGG-TGGAGGCTT--------GCCTTTCAACCTC--TGAATAATAATTGATACTAAAATTGAGAAGT--TTTCCAGACACCAGCTTCCTGAAAGGAGCATCCAGTC-------AGAAGACAAGATGAGGTCAGTAGCGAAGGTGACTCAGG--CTGAGTGGGGAAGTCCACCAGCGTATCTGAAGACTGAGCTAGGGGAGG-GTTTCCCTAATGTTCACTCCTTCTGCCCTCCATATATTCCTCTACTTTTCC--CAAACTTCCCTCTGACATCCTCCAAACTTTCTATCTTCCCAGGGCTTTC-TTGCCAGGGAGTCTAATGAAGTAAAAGC--TTTAAAATTGCTTTGATTTT s panTro1.chrUn_random 63522431 358 + 240967748 CTGCCCCCTCATTTCCCCATTTTGTATAAA-TAAGAACCCC---------------------------------CAGGTGAAGTGGAGTTTCTCCCCAGCAGAGGGTCTCACCAAGGCCCCAGGACTGG-CA------------CTTTAGG-TGGAGGCTT--------GCCTTTCAACCTC--TGAATAATAATTGATACTAAAATTGAGAAGT--TTTCCAGACACCAGCTTCCTGAAAGGAGCACCCAGTC---------GAGACAAGATGAGGTCAGTAGCGAAGGTGACCCAGG--CTGAGTGGG---------------------------------------------------------------------CCGTACATTCCTCTACTTTTCC--CAAACTTCCCTCTGACATCCTCCAAACTTTCTGTCTTCCCAGGACTTTC-TTGCCAGGGAGTCTAATGAAGTAAAACC--TTTAAAATTGCTTTGATTTT s mm5.chr4 45135793 368 + 154141344 CCCCCCCCCCA---CCTAATTTTGTTTGAA---------------------------------------------------ATCTAAGTTTCCCCTTAA-ACAAGGTGTCCTGTGGGATCTAGTGCTGT---------------CTTTAGGCTGGAGGTCCTAGCAAGAGGGTCCCAGCCTC--TGAGTAAAAACTAAGACCAAGTCCCAAGTGTA-TTTCCAGA-AC----------GAAGAGGAATTGGGCC-------AGCAGTCAAGATGTCGCCAGTGGGAAAGGTGTCCCAAGTACAGAATGGCAAAGTCTACCAGCAGATCT---TCCAGGCCCAGGTAGGT-GTCCTGCTGGCCTTTGCTC----------CCTTTCCCTCCCCTGGTCTCCCCACAAACTTTC--CTGGTCCTTTCTAATTTTTCTTTGTTCTGAGAGTTTCC-CTGTC---------------------------TAAGATCCATTTTATTTT s rn3.chr5 62404147 371 + 173106704 CTCCACGCACA---CCTTATATTGTTTGAA---------------------------------------------------ATCTAAGTTTCTCCTTAA-ACAAGGTGTCCTGTGGGATCTAGTGCTGT---------------CTTTAGGCTGGAGGTCCTAGCAAGAGGGTCCCAGCCTC--TGGGTGGAAACTAAGACCAAGTTCCAAGTGTG-TTTCCAGA-AC----------CAAGGGGAATTGGGTC-------AACAGCCAAGATGTCGCCAGTGGGAAAGATGTCACAAGTACAGAATGGCAAAGTCTACCAGCAGATCT---TCCACGCCCAGGTAAGGCGCCCTGCTGGCCTCTGTTC----------CCTTTCTCTC----AGTTTCCA--CAGACTTTC--CTGGTCCCTTCTAA-TTCTTTTTGTTCTGCGAGTTTCC-CCGT----------------GTAAGAGCTGTTTTACTTATCTTTTATT-- s canFam1.chr11 56027704 431 + 75769841 TTGCCCCTCC----CCTCTTTTTGTTTAAAATGAAAACCCCGATGCCTGAGCGGAACCCCATGCTTTCACTCAGACAGTG-GGGTGGGTCATGCCCCAG-CCGGGTTGCCTAGATGGGTCTGGTCCTAGGCAGAGAGGACTTGTCCTGGGGTTGGGGTGTC-------AGTTTTTCAACCTCTGTGGGTCAGAATAGAGATCAAACCCCAGACAGGATTCCTGGACAATGAATTCCCAACAGGAGTGTCCAGGCCAGCAGCCAAGGTCAAGATGTCCTCAGTGGGGAAGGTGACCCAGGTTCCCAGCGGGAAACTCTACCAGCAGATCT---TCGAGGCTGAGGTAGG-------------------------------TCTGACCCTC------TTCTCT-------------CTG---CTCCCCAAACTTTCCTCCCGCTGAAGGCTTTTGTCACCCGGGAATCCAATGAAATAAGGC---TTTGAAATTGCTTTCATTTT a score=12661.0 s hg17.chr7_random 271969 67 + 778964 GAAGTCCACCAGCGTATCTGAAGACTGAGCTAGGGGAGG-GTTTCCCTAATGTTCACTCCTTCTGCCC s panTro1.chrUn_random 5221943 67 + 240967748 GAAGTCCACCAGCATATCTGAAGACTGAGCTAGGGGAGG-GTTTCCCTGATGTTCACTCCTTCTGCCC s mm5.chr4 45136012 64 + 154141344 AAAGTCTACCAGCAGATCT---TCCAGGCCCAGGTAGGT-GTCCTGCTGGCCTTTGCTCCCTTTCCCT s rn3.chr5 62404366 59 + 173106704 AAAGTCTACCAGCAGATCT---TCCACGCCCAGGTAAGGCGCCCTGCTGGCCTCTGTTCCCT------ s canFam1.chr11 56028001 42 + 75769841 AAACTCTACCAGCAGATCT---TCGAGGCTGAGGTAGGT-------CTGACC---------------- a score=91.0 s hg17.chr7_random 272036 1 + 778964 T s panTro1.chrUn_random 5222010 1 + 240967748 T a score=6509.0 s hg17.chr7_random 272156 28 + 778964 AAAAATA-ATT-TTATTGATTCTTAAAATG s panTro1.chrUn_random 63522789 28 + 240967748 AAAAATA-ATT-TTATTGGTTCTTAAAATG s rn3.chr5 62404518 29 + 173106704 GAGAATAGACT-TTTTTCATACAATAAATA s canFam1.chr11 56028135 29 + 75769841 AAAAATA-ATTCTTATTGGTTCTTAAAACA a score=91.0 s hg17.chr7_random 272184 1 + 778964 T s panTro1.chrUn_random 63522817 1 + 240967748 T a score=154.0 s hg17.chr7_random 272184 3 + 778964 TAC s rn3.chr5 62404547 2 + 173106704 -AC s canFam1.chr11 56028164 3 + 75769841 TAG a score=5713.0 s hg17.chr7_random 272187 93 + 778964 CGACACAAAATTAGAATACCAATTCTTAAAATGCTTAAAAAGTAAATTAAGTGTAAGTTTACATTTAATTATCTTATTTGATTCCtaattaaa s panTro1.chrUn_random 5222161 93 + 240967748 TGACACAAAATTAGAATATCAATTCTTAAAATGTTTAAAAAGTAAATTAAGTGTAAGCTTACATTTAATTAACTTATTTGATTCCtaattaaa s rn3.chr5 62404549 57 + 173106704 TGCTA------TTGGGTA-----TATTATAGTGCACACATAGAAGAACATGGG-------ACGTTTGGTT------------------TCAAA s canFam1.chr11 56028167 63 + 75769841 GAATACAAAATTAGAATCTCTATTCttgaaaagcaaagaa-----------------tttacattaaaat-------------tgtaattaaa a score=1628.0 s hg17.chr7_random 272280 9 + 778964 atacaaaaa s panTro1.chrUn_random 5222254 9 + 240967748 atacaaaaa s rn3.chr5 62404606 9 + 173106704 ATTAAAAAA a score=4389.0 s hg17.chr7_random 272289 61 + 778964 aattttttttgaaacaaggtcttgctctgtcacccagactggagtgcagtggtgagatctt s panTro1.chrUn_random 5222263 58 + 240967748 aa---attttgacacaaggtcttgctctgtcacacagactggagtgcagtggtgagatctt a score=19567.0 s hg17.chr7_random 272350 229 + 778964 gggttattgcaacctccaccccctaggttcaagcgattctcatgcgtcagcctcccaagtagctgggactacaagcacacaccaccaattggctaatttttgtgtttttagtagatatgaggttttgccatggtgcccatagtggtcgcaaactcctcgtctcaagtgattcacccacctcggcctcccaaaatgctgggattacaggtttgagtcaatacacctgacc s panTro1.chrUn_random 63532931 228 + 240967748 gggttattgcaacctc-accccctaggttcaagagattctcatgtgtcagcctctcaaatagctgggactacaagcacacaccaccaattggctaatttttgtgtttctagtagatatgaggttttgccatggtgcccatactggtcacaaactcctggtctcaagtgattcacccacctcggcctcccaaagtgctgggattacaggtttgagtcaccacacctgacc a score=2265.0 s hg17.chr7_random 272579 12 + 778964 ttaa-tttttttt s panTro1.chrUn_random 63533159 13 + 240967748 ttaaatttttttt s mm5.chr4 45136360 11 + 154141344 TTAA--TTTTGGT s rn3.chr5 62404615 11 + 173106704 TTAA--TTTTGGT a score=23623.0 s hg17.chr7_random 272591 62 + 778964 ttaaattataggtaaatttaaattaCTCAGAAATAGTCAGAATTAACCGTTGGATACCCTGA s panTro1.chrUn_random 63533172 62 + 240967748 ttaaattataggtaaatttaaattaCTCAGAAATAGTCAGAATTAACCGTTGAATACCCTGA s mm5.chr4 45136371 59 + 154141344 TAAAAATAT-TTTTAATCGAAATTATTCAGAATTAGTCTGAATTAACCATCTGTG--CCTGA s rn3.chr5 62404626 59 + 173106704 AAAAAAAAT--ATTAATCAAAGTTTTTCAGAATTAGTCTGAATTAACCATTCTGTG-CCTGC s canFam1.chr11 56028230 62 + 75769841 ttagattaaatttaagcttaaattattcagaaatagccagaattaaccattggatatcttgg a score=17144.0 s hg17.chr7_random 272653 43 + 778964 ATCTTTTTCCCATGCAT--AAGCCTTTCTAA---------TCTTTCTATTCAAA s panTro1.chrUn_random 63533234 43 + 240967748 ATCTTTTTCCCATGCAT--AAGCCTTTCTAC---------TCTTTCTATTCAAA s mm5.chr4 45136616 45 + 154141344 ATTCTTTTGGAGAGCATAAAAGCAGTTCTTA---------TTTTTCTGCTTAAA s rn3.chr5 62404685 45 + 173106704 GTCTTTTTGTAGAGCATAAAAGCAATTCTTA---------TTTTTCTGTTTAAA s canFam1.chr11 56028292 54 + 75769841 gacctttttctatgcacaaaagcattcctagttttttttttttttctatttaaa a score=83761.0 s hg17.chr7_random 272696 523 + 778964 TTTAGGATTTGATTCGGTTCTAGTGTTTTAAAACCTGCTTTTTTCCTTCAAAGAA----ATGTAGACCATCTCTCAGGCCAATGGACA-TCACGGATTTTCTGATGCTTAGAGGCTGACTGGTTGTTTATCTATGACCTCCCATAATGTACTTAAGTAACACCCTCTTGATGATGGGGTTAAGTTGTTGAAATTACCTTGTTTT-----------TTCTGAAGCACTACGTGGAAAATATTAGATCTTGAAAGAAACACATAAACCCATACCACACACTTCCTTTGAAATTCTCT-GCTGGTTATTTAAAGAGATGttt--attcctgactaaggtcctacattacactctctgtagaacttttggaaacgataaaagtacaagacaatcaataaagcaatttaatttctcacaggatcctgattcctataagaaacacatcaattcctataattcggcatatttcctctcaatcatttttctacacattttaaattttgggctctaa-tgtataagtttggttatactttttaatgtatgcc s panTro1.chrUn_random 63533277 524 + 240967748 TTTAGGATTTGATTCAGTTCTAGTGTTTTAAAACCTGCTTTTTTCCTTCAAAGAA----ATGCAGATCATCTCACAGGCCAATGGACA-TCACGGATTTTCTGATGCTTAGAAGCTGACTGGTTGTTTATCTATGACCTCCCATAATGTACTTAAGTAACACCCTCTTGATGATGGGGTTAAGTTGTTGAAATTACCTTGTCTT-----------TTCTGAAGCACAACGTGGAAAAATTTAGATCTTGAAAGAAACACATAAACCCATACCACACACTTCCTTTGAACTTCTCT-GCTGCTTATTTAAAGAGATGttt--attcctgactaaggtcctacattacactctctgtagaacttttggaaactataaaagtacaagagaatcaataaagcaatttaatttctcacaggatcctgattcctataagaaacacatcaattcctataattcggcatatttcctctcaatcatttttctacacattttaaattttgagctctaagtgtataagtttggttatactttttaatgtatgcc s canFam1.chr11 56028346 527 + 75769841 -aatgggtttgattcaatgccagtgttttgaaacctgcttttcccctattaacagtatcacacagaccttccc-catgccaagaggcagtcatgtatttcaggatgctgagaggttgccttattgttaatctaggacttaccataacgtattcaagtaataccctcttgacaaccata-taggttgctgggattgccttgttgtctataaaAAGCCTATAAAAAACTGCACGGACAAGAT---ATCTTAAAAGAAACACACAAACTTGAACC-----CTTCCTTTGAAGTTCTGTAACTGCTTATTTAAAAGGGAGTTTTCATTCCTACTTTAAGCCCTAaataatgctttctgtagaagacttggaaattgtacaagcataaggagagcacagaaaca----aattactcacatgatcctgctgcctggaagcaacacacc-attcttcacatttagcacactttctctgggtcatttttctaagagtttaaagttttgaaatcatactgtataattttggttataatttttaatttatgct a score=25431.0 s hg17.chr7_random 273219 65 + 778964 tttcattaatatgtttaatggtatatcatctcataagcacttctccatgtgataaaaaattcttt s panTro1.chrUn_random 63533801 65 + 240967748 tttcattaatatgtttaatggtatatcatctcataagcacttctccatgtgataaaaaattcttt s mm5.chr4 45137851 63 + 154141344 TTTAATTGCTATGTTTAATGATACACTATTGGGTAATGG--TTTCCTTGCCATAAGACATTTGTG s rn3.chr5 62405878 63 + 173106704 TTTAACTAATAGGTTTAATGATACATTATTGGTTAACAG--TTTCCTTGTCATAAAAAATGTGTG s canFam1.chr11 56028873 60 + 75769841 tttaattgatatgttttatggtatatca-----aaagcatttccccatgtcataaaaaaagcctt a score=0.0 s hg17.chr7_random 273284 8 + 778964 gtacatcc a score=812.0 s hg17.chr7_random 273284 4 + 778964 gtac s panTro1.chrUn_random 63533866 4 + 240967748 gtac s mm5.chr4 45137914 4 + 154141344 GTCA s rn3.chr5 62405941 4 + 173106704 GTAA a score=1117.0 s hg17.chr7_random 273288 4 + 778964 atcc s panTro1.chrUn_random 63533870 4 + 240967748 atcc s mm5.chr4 45137918 4 + 154141344 TTTC s rn3.chr5 62406137 4 + 173106704 ATTC a score=192522.0 s hg17.chr7_random 273292 707 + 778964 catttttaatacatatatgtagctccaaagaaaa----------agcatatctt-------------------gtttactct--tctaatcctgtagtatttgaa---------------aactttgtttttc---------caattctttgagataataaaCTG-GTTAGGGTTAGTATTT------TGGTCCCCATTTAAATTTTCTAAGAGTTGCCTTTCTATAAGTGGCTAAGTGACTGTTACAAGGAGAAGAGCCCTCCTGAAGGGG-TGTGCCATGGGGTT-GAGGCCTCCCTGCAAAGTGCCTTCCTTGTGGCAGATCCCCATGTGTCTTTCTAAAAT-----------CAGCACAGTCAGACTGAGCGTGATTGG-AATTCTGCAGCT-----GTGACCCCTCTCGAATCTTCCTTCAATTCAGATGCAACTAATCTCCTCCTTGGTGGACACCAGGAAGTAGGCTGTAGAGCATTCTGTGACCCTGAAGAATGACACGATGTTCTTGATGAAGAGGGTGGATATTCCTGAAGGAGAAATAATGTTTTCTCAACAGCAGAAGCAGATATCAAGTTTATTCAATGACTGGGTCATGGAAAATCCTGTTCTCTACAGGTTGA---TGCTA--------CATTCCA---GGCAAACCCACACCCTCGGTGTATGCCAGAGGCTTCAGAAACACAAA-GGAGCTCATATGAGATGAGTGCCAGGTAGCTATGAAGCCTCAAGAACTTCCACTGCAACA-GAAGATA----ATAAC--TTACTCTGAAGAATTGTTTGCATCTCCCT s panTro1.chrUn_random 63533874 708 + 240967748 catttttaatacatatatgtagctccaaagaaaa----------ggcatatctt-------------------gtttactct--tctaatcccgtagtattcgaa---------------aactttgtttttc---------caattctttgagataataaaCTG-GTTAGGGTTAGTATTT------TGGTCCCCATTTGAATTTTCTAAGAGTTGCCTTTCTATAAGTGGCTAAGTGACTGTTACAAGGAGAAGAGCCCTCCTGAAGCGG-TGTGCCATGGGTTT-GAGGCCTCCCTGCAAAGTGCCTTCCTTGTGGCAGATCCCCATGTGTCTTTCTAAAAT-----------CAGCACAGTCAGACTGAGCGTGATTGGTAATTCTGCAGCT-----GTGACCCCTCTCGAATCTTCCTTGAATTCAGATGCAACTAATCTCCTCCTTGGTGGACACCAGGAAGTAGGCTGTAGAGCATTCTGTGACCCTGAAAAATGACACGATGTTCTTGATGAAGAGGGTGGATATTCCTGAAGGAGAAATAATGTTTTCTCAACAGCAGAAGCAGATATCAAGTTTATTCAATGACTGGGTCATGGAAAATCCTGTTCTCTACAGGTTGA---TGCTA--------CATTCCA---GGCAAACCCACACCCTCGGTGTATGCCAGAGGCTTCAGAAACACAAA-GGAACTCATACGAGATGAGTGCCAGGTAGCTATGAAGCCTCAAGAACTTCCACTGGAACA-GAAGATA----ATAAC--TTACTCTGAAGAATTGTTTGCATCTCCCT s mm5.chr4 45137922 723 + 154141344 TGTCTCTAGTAAGCAACTACCCTTCCATCAAAGGATTTTTACTTAGCCCATCTCCTATTACTGAATGGTTCTGGGTTATTTTGCTCTGTTTTTGTTGTTTT--------------------GTTTTGTTTTTCATTTATTATCAGTTTCTTATGATTACAAA-------AATAATTGTATTCACTAAATGATCTTCATTCAAAATTTTCTACATATACCTTTCTTGAAAC-ACCCTGTGCCTGTT--------AAGAGATCTTCTGCACTGG-------GTGGGCAT-GGAGTCTGAGTACAGGGAGCCTTCTGGATGCCAGGTGCCTCCATGTCCTCCTACAACGTCCTCCGACATGTCACAGTCGTCAAGAAAG-GCTTGG-GCACCTGAAACTTTCACATTACCTGCGTCTCATCTTTCCCGTACTCAGGTGCAGCTGGTTCAGTCTCTGGCAGCTACCAGGAAGCAGGCTGCAGAGCGTTCTGAGACTCAAAAGAATGTCAAGACACCCATGATGAAGAAGGTGCCATTACCTGAGGGGGAAACTATGACCCCTCGCCAGAGGAAGTGGGTGCGTAGCCTCCCCAACGACTGGGTCACGGAAAACCCAGTTCTTTATAGGTAAGCCTTGCTA--------------------CCAAGCCACATTGCAGGT-----CCCCAGTCTTCAAAGACTCAGA------------AAGATGTATGCCCAGGAGGAACAGAGCCTCAAGTACCTTCTCCAAAACAGGGAGCTT----GTCACATCTGCTTGGAAAGATGTTTCTCTCCTCCCT s rn3.chr5 62406141 715 + 173106704 TGTCTTTAGTAAGCACCTACCATTCCATCGAAGGAATTTTACTCAGCCAGTCTC-------------------CTTTTACTG--AATGGTTCTGGTTTATTTTGCTTTGTTTTCACTTTTTGTTTTGTTTTTCATTTATCATCCGTTTCTTATGGTTACAAA-------AATAATTGTGTACACCAAATGATCTTCATTCAGAGTTCTTTACGCACACCTTCCTTGAAAC-GCCCCATGCCTGTT--------AAGAGATCTTCTGCAGTGG-------GTGGGCAT-GGAGTCGGAGTACAAGGTGCCTTCCGAATGCCAGGTGCCTTCATGTCCTCCTACGTC--------ACATGTCACAGCCATCATGAAGA-GCTCGG-GCACCGGAAAAGTTCACAATCCCTGTGCTCCATCTTTCTTGCACTCAGGTGCAGCTGGTTCAGTCCCTGGCAGCCACCAGGAAGCGGGCTGCAGAGCATTCTGAGACTCCAAAGAACGTCAAGACACCCATGATGAAGAAGGTGCCGCTACCTGAGGGGGAGACTATGACCCCTCGGCAGAGGAAGTGGGTGCATAGCCTCCCCAACGACGGGGTCACGGAAAACCCAGTTCTCTATAGGTAAGTCTCGCCACTGGGCCCCATTGCA---GG---------------GGT-----CC---GTCTCCAGAGACTCAGG------------AAGATGTGTGCCCAATAGGAACAGAGTCTCGAGAACCTTCTCCAAAAACGGGAGCTTTTGGTTAAC--CTGCTTGGAAAGACGTTTCTCTCTTCTCT s canFam1.chr11 56028933 707 + 75769841 tgttcttaataaatacctaacattccattgaaag----------gacatggcaa-------------------gtttactca--accagtcccctaaaattgtac---------------agccccatttttc---------taattccttgtgattatgaaagatgctggcataagcgtct------tGGCCCTCATTAAAATTTCTTAAGAGATATCTTTCTAGATG--GCTGAATATTTGGG--------GGTGGGGTGCCTGCATGGCAAATACCCTGGGGTTAAAGGCCTCCCTGCAAAGTGTCTTCCTTCTGGTAAGTTCCCCCATGACCTTATGAGAC----------------AGGCCAGGGTGCTGGGGAGTGG-ATGTTTTGGGATGTTTGGAGAATCCACTGGGATCTTTTGTGGATACAGGCACAGCTGGTCCGCTCTCTGGCGTCCACCAGGAAGCATGCTGTGGAGCGGTCCATGACCCCAAAAAATGGCAAGAAGCCCTTGATGAAGAGGATGGATATCCCTGAAGGGGAGATGTTGTCTGTTCGGCAGCAGAAGTGGGCACACAGCCTACCCAATGACTGGATCACAGAAAACCCTGTTCTCTACAGGTAGG---TCCTG--------TGGTCAACACTGCACCTCCACACACTGGAGGTGTGTCAGAGTCTTCAAAGACTCAGAAAGATCTCATGCAAGATGAGGGCCAAGTAGGAATGAAGTCCCTGGTACCTCTTCAGAAAGAGAGAAGTA----ACAGCACCTCCTTTGCAGAACTCTAGGCTTCTCCCT a score=0.0 s hg17.chr7_random 273999 2 + 778964 GC a score=69.0 s hg17.chr7_random 273999 2 + 778964 GC s panTro1.chrUn_random 63534582 2 + 240967748 GT a score=1784.0 s hg17.chr7_random 274001 7 + 778964 CCATCCC s panTro1.chrUn_random 63534584 7 + 240967748 CCATCCC s canFam1.chr11 56029640 7 + 75769841 CCATTCC a score=20208.0 s hg17.chr7_random 274008 220 + 778964 CTGGCTACTGAGTGCAACCATGCAACTCATTGCATGCAACTATAAATATAGCTACAACTATGAAAATAGCTGAGATTCTAAACCACAAATACAGACAACTACGAATATAGGTGAGACAAAAAACTGTAAACCTTCTTAAGGGTGTACAACATGTAACAACGGCTCCCATTAGCTCATGTTTAGATACCAAGGAAATAATAGCAGGAATGTTTTATGTTCA s panTro1.chrUn_random 63534591 220 + 240967748 CTGGCTACTGAGTGCAACCATGCAACTCATTGCATGCAACTCTAAATATAGCTACAACTATGAAAAGAGCTGAGATTCTAAACCACAAATACAGACAACTACGAATATAGGTGAGACGAAAAACTGTAAACCTTCTTAAGGGTGTACAACATGTAACAACGGCTCCCATTAGCTCATGTTTAGATACCAAGGAAATAATAGCAGGAATGTTTTATGTTCA a score=91.0 s hg17.chr7_random 274227 1 + 778964 A s canFam1.chrX 68576549 1 - 126913094 a a score=17750.0 s hg17.chr7_random 274228 120 + 778964 CATTCCAAACAAAACCTATTATCATTCATCGTCAGTTCATTTAGTCCTGTTTTACTCATACTTGTTTTACTCTATCTT--GTAAGCACATATG------------CTTCTCTGCTAGAA------------------TTAGAGAAATAAATT s panTro1.chrUn_random 63534811 120 + 240967748 CATTCCAAACAAAACCTATTATCATTCATCGTCAGTTCATTTAGTCCTGTTTTACTCATACTTGTTTTACTCTATCTT--GTAAGCACATATG------------CTTCTCTGCTACAA------------------TTAGAGAAATAACTT s mm5.chr15 60392250 134 + 104138553 CATTGGAGAGAAATTCTTTAGCCACTCA---TCAGTCAACCT-GTCCTCCATGATTAATTCTTATTCTCCTTAATCTTTGATGAGCAGTCATGTACCTACAGTATCTTTTCAACTACAG--------------AGGTGTGGGAATCTCAACT s canFam1.chrX 68576550 140 - 126913094 tattccaaacaaaagccataattatccttcatcagttcactcagtcccatggaattcatccttgctctgcttgatcttgggttggcagtttta------------tgaacccACTGGAGTTCTGaaaaatattttttttaaaaaaGTAATTT a score=22024.0 s hg17.chr7_random 274348 107 + 778964 AGTCCACTGATAGTGTTTCAAAGTTATATAAGTCATTCTATCAGAAGCCTGTTTATAGGAGTACTTGGCACAGT-TATTTCTGTGGGTCTCTGAGACATTCTTATTTT s panTro1.chrUn_random 63534931 107 + 240967748 AGTCCACTGATAGTGTTTCAAAGTTATGTAAGTCATTCTATCAGAAGCCTGTTTATAGGAGTACTTGGCACAGT-TATTTCTGTGGGTCTCTGAGGCATTCTTATTTT s mm5.chr15 60392384 93 + 104138553 CTTACATTGCTA-TGGCCCATGATAATTTATGAAGCACCATCAGAGGCTT--------------CTGGCATGATCTTTTTCTGTGGGTATCTGGGATAGTTCTATTTT s canFam1.chrX 68576981 107 - 126913094 AGTTCAGTGGTGTGGTCTCAAAATCATTTAAGCAATGCCATCAGAAGCCTGTGTCCCAGACTACATGGCACAGT-CCTTTCCAGGGCTCGCTGAGACTATTAAATTTT a score=16035.0 s hg17.chr7_random 274455 73 + 778964 GTTGAAGACAAAGCCCTGTGGCCTGGAACTGATTTGCAAGCACTTTTAGAAAAATAGCCGAGTACAACCAAAA s panTro1.chrUn_random 63535038 73 + 240967748 GTTGAAGACAAAGCCCTGTGGCCTGGAACTGATTTGCAAGCACTTTTAGAGAAATAGCCGAATACAACCAAAA s mm5.chr15 60392477 67 + 104138553 GTTGCTGATAAAGCCCCCTGCC------CTAATTTGCTGGTGATAGTTAGGAGGTGTCAGAGTATAAACACAA s canFam1.chr7 61731491 68 + 83037113 GTTAAAGATAAAGCCCACTGGCCTGAAA-----TTGCAAGAGCCTTCAGGGAAGCAACAGAGCAAAACAAAAA a score=210738.0 s hg17.chr7_random 274528 2371 + 778964 GTATATACTAATGAAAAAGTAAGCCATGCTTTCAGGTATGTAGTTAGTTGATACACTAAAATATTCTTTTATATAATGCAAACAGCACTAACACTTTAAAAAATAGAATTatatcatgcagagtgagggcactggaaattttttaaaaaactttcatttctggattatttacattaataacaattatgtaaaaaatttaacctaggggaagctaagcatatgtcttattATTTAATATAACAAGATGCAAAATAGGCAAGTTTCCATATATGATAGTAGGACATAAAGTGTGCTGATACAAATATGAAACATAAAATATAAGTAAGAAATAGAAAAAATGACCTGTGTATGTTGATTATTTATATGTGTGTTTATTACTATTTTTAGTAGCTTAGATTATGTAAATATGTATTATATTTTAGGCAGCAGCAAATATTAACATATTTTTTAACGTGCAGCTTAGATAAGAATTGATGATTACAATTTATTAATATTAGCTACTTACGACAAACATTATGCAAAAAGAAATTCTAAAAATAATTTTGTATTAACTTTGAAAA-TTTTAAACTCTTTTCTACAGAAGTTTTTTAATTACAGACAATAAAATAGAAAGTTTATAAAAAAGAAAATGCTACTGAGAAATAGTTGGATTTTGATTCATTATTTTTTCTGAATATTAGTACTTGGAGCTTCACTGTTAATAATGCCAATAGGCTACACAAATTTTCTCTTCAGTAAAATGGCAAAACAGAAGGCATTCAATTTTTAAATATACGATGCAATTTT-ATTACCGTTTTTCTATATAAAAGACACAAAATTTAGACCAATAAAAACAGAATTTCTTCCATGAAATTtcaagagctgagctgagctgggaagagctaacctgcttaatatcagagtt-ttaaattaaagcaagaggcccacatcaaagaaatagttacgcctttttgtcttcctttctgtgattgtgttaaacaacaggcaacattagatcaagcaccgactcctaattgttccattttttcctcatggaaaagcaccaggaaagggtcagatggatcagcacaaacatggggcactgtctcactgccgaggtggcaccctcataaaaaacaggcccgcaattttgtggaaaagggggtaggagagcgtagaggagaatgtatgagcaagattaaagagaattgaatattaataggaatgtatgaaaattattatcaaagttccatttcttctccagaaacagggatctgaacaaaagtttctgaagaaggcctcaaccaaaagcccctcagttaggtgcccctgaatctagatgcctggactgggaatgaaaatctacatgtgagcctcagtggccaagatttccggtattgtttatttcaacccctcagagactgcaatgcactgacATTTACATGCTTCTCCTAAATGCACATGTCAGCAGCAGTGTGACAACCAA-TGCTTTCAAAGATATAATGTGGGTATCAGAGTTTCTGGCAAAAATTTAGATAATCTTATCTTTTCAACCTCAAATAACAATATATGCTGAGAAACTTCAAAGGCATGCACCTCCACAAATAATTTTTCAGGAAAGGATAAAGAAGCACAGCTGTAGGAGAAAAATTAGGCTGGAAGTTGATGCTACCTGTGGGAATTGCTAATAATGGAAGCACAGTTTGTTAGAATTTAACATGTCTGATTGGTGAATATAATGTCACAGCAGCATAGATGCAGGAGTACTTGGATCTGACTATGCTATCTAAAGCTAGAATCCTTACATTTTCAAAAGTTTAGAAAAATAGGTTAGTTAGTGGAGGTGGTATTTCTCCTCTTTGGTTGATTTGGGAATTAACACCAATCATCATATGAGTTTCTGGTTCATATGTACACTATGTGTTTTACTCAGGACAATTTAGGTAAATATATAGACTTAATCATTTTCAGGTGTCTGTAAAGGGTGCATTATTAACATTACAGATAACTTTTCATTGGAATAAAATACCTCGACCCAGAATCTTCTATGGCCCCATCAATTGAGGTCAGTCATTTATAATAAAATGAAGTCTACTATTCTTTTTAAAATATACAAAGTTAAAGTCATCAAGATCAAAGTTATTAAGAAATAAAATTATAAGAAAAACACAGCTGTACCATTACATCTTAATAAATCCCAAAATTGTATATATACTGTAGAAATAATATAAGTAGTTATAATGTTTAAATATATTAGAGGAAAAGTTTAAAAGTAAGATCAAAATAAGGTATATTATCaaaataattaggtaaaaattttaaatttaaaggatagaatacatagaaaaattacataattgaaaaagaaattatg-aattagaagatatgatga s panTro1.chrUn_random 63535111 2374 + 240967748 GTATACACTAATGAAAAAGTAAGCCATGCTTTCAGGTATGTAGTTAGTTGATACACTAAAATATTCTTTTATATAATGCAAACAGCACTAACACTTTAAAAAATAGAATTatattatgcacagtgagggcactggaaatttttttaaaaactttaatttctggattatttacgttaataacaattatgtaaata-tttaacctaggggaagctaagcatatgtcttattATTTAATATAACAAGATGCAAAATAGGCACATTTCCATATATAATAGTAGGACATAAAGTGTGCTGATACAAATATGAAACATAAAATATGAGTAAGAAATAGAAAAAATGACCTGAGTATGTTGATTATTTATATGTGTGTTTATTACTATTTTTAGTAACTTAGATTATGTAAATATGTATTATATTTTAGGCAGCAGCAAATATTAACATATTTTTTAAGGTGCAGCTTAGATAAGAATTGATGATTACAATTTATTAATATTAGCTACTTACGACAAACATTATGCAAAAAGAAATTCTAAAAATAATTTTGTATTAACTTTGAAAAATTTTAAACTCTTTTCTACAGAAGTTTTTAAATTACAGACAATAAAATAGAAAGTTTATAAAAAAGAAAATGCTACTGAGAAATAGTTGGATTTTGATTCATTATTTTTTCTGAATATTAGTACTTGGAGCTTCACTGTTAATAATGCCAATAGGCTACACAAGTTTTCTCTTCAGTAAAATGGCAAAACAGAAGGCATTCAATTTTTAAATATACGATGCAATTTTTATTACCGTTTTTCTATATAAAAGACACAAAATTTAGACCAATAAAAACAGAATTTCTTCCATGAAATTtcaagagctgagctgagctggggagagctaacctgcttaatatcagacttcttaaattaaagcaagagacccacatcaaagaaatagttatgcctttttgtcttcctttctgtgattgtgttaaacaacaggcaacattagatcaagcaccaactcttcattgttccattttttcctcatggaaaagcaccaggaaagggtcagatggatcagcacaaacatggggcactgtctcactgccgaggtggcaccctcataaaaaacaggcccacaattttgtggaaaagggggcaggagagcgtagaggagactgtatgagcaagattaaagagaattgaatattaataggaatgtataaaaattattatcaaagttctatttcttctccagaaacagggatccgaacaaaagtttctgaagaaggcctcaaccaaaagcccctcaggaaggtgcccctcaatctagatgcctggactgggaatgaaaatctacatgtgagcctcagtggccaagatttccggtattgtttatttcaacccctcagagactgcaaagcactgacATTTACATGCTTCTCCTACATGCACATGTCAGGAGCAGTGTGACAACCAAATGCTTTCAAAGATATAATGTGGGTATCAGAGTTTCTGGCAAAAATTTAGATAATCTTATCTTTTCAACCTCAAATAACAATATATGCTGAGAAACTTCAAAGGCATGTACCTCCACAAATAATTTTTCAGGAAAGAATAAAGAAGCACAGCTGTAGAATAAAAATTAGGCTGGAAGTTGATGCTACCTGTGGGAATTGCTAATAATGGAAGCACAGGTTGTTAGAATTTAACATGTCTGATTGGTGAATATAATGTAACAGCAGCATAGATGCAGGAGTACTTGGATCTGACTATGCTATCTAAAGCTAGAATCCTTACATTTTCAAAAGTTTAGAAAAATAGGTTAGTTAGTGGAGGCGGTATTTCTCCTCTTTGGTTGATTTGGGAATTAACACCAATCATCATATGAGTTTCTGGTTCATATGTACACTATGTGTTTTACTCAGGACAATTTAGGTAAACATATAGACTTAATCATTTTCAGGTGTCTGTAAAGGGTGCATTATTAACATTACAGATAACTTTTCACTGCAGTAAAATACCTCGACCCAGAATCTTCAATGGCCCCATCAATTGAGGTCAGTCATTTATAATAAAATGAAGTCTACTATTCTTTTTAAAATATACAAAGTAAAAGTCATCAAGATCAAAGTTATTAAGAAACAAAATTATAAGAAAAACACAGCTGTACCATTACATCTTAATAAATCCCAAAATTGTATATATACTGTAGAAATAATATAAGTAGTTATAATGTTTAAATATATTAGAGGAAAAGTTTAAAAGTAAGATCAAAATAAGGTATATTATCAAAATAATTAGGTAAAAATTT-AAATTTAAAGGATAGAATACATAGAAAAATTACATATTTGAAAAAGAAATTATGCAATTAGAAGATATGATGA a score=26976.0 s hg17.chr7_random 276899 269 + 778964 agtga-atatttagaagtcccaataggcata-aaacaaataaacaat-atgaaaaattaa-aatacataaaaatctagaataaGTCATGTTGTTTAAGTGCAAGTTTGAATAAATA--AAATGGAGTGAATGTCAA-ATAGGGaataaaaatatataattattaaaata-attaattat----------aataGC---TTAAAGGCATTCTGATCAAAAGAAAAACAATAGTTAAAAGCATAATACCATAATAGAGAAAATCACGTAAAGCTATCTAAGATAAAATTCAA s panTro1.chrUn_random 63537485 270 + 240967748 AGTGA-ATATTTAGAAGTCCCAATAGGGATA-AAACAAATAAACAAT-ATGAAAAATTAA-AATACATAAAAATGTAGAATAAGTTATGTTGTTTAAGTGCAAGTTCGAATAAATA--AAATGGAGTGAATGTCAAGATAGGGaataaaaatatataattattaaaata-attaattat----------aataGC---TTAAAGACATTCTGATCAAAAGAAAAACAATAGTTAAAAGCATAATACCATAATAGAGAAAATCACGTAAAGCTATCTAAGATAAAATTCAA s canFam1.chr20 54069237 254 - 61172541 AGTGAGACATTTTTAAATGCTTAAAGACATACAAACATACAAAaaataatgaaatatgaagaaaatacataattttaaaata--------ctaccaggtgta---ttaaaaaaacaacaaatgaaactaactctta-----ggaacaaaaaaataaaataaatataatatactagtaatggatatgtgaaatagctgtttaaacaca----gttgaagagagaattagt-----gaactagaatattagactaaag-----------gggttattcaggatgtagttcat a score=11881.0 s hg17.chr7_random 277168 265 + 778964 ATTAATTATAAAGCAATGAAAAGAAAC---ACATTT----------CTCAATATGTGAAT---AAGATCA-AGAATCCAA-----TAGGTT---ACGGTTTTAAAAG--------------TTCTGAGGGAAAAACATGTAA--ATTTAAAATTACATATATTCGAAAAGTTATTTTCAGGTTTAAGGACAAAATGTAACT---------TAATACACAAAT-ACAATGTAAA--CACTATAA--------TTATGTCAGTGAAATGCATTTAAAATTTGCTGAAAA----------TTTAGTTTATGAAGAAAAATAC-----------------TCTTCCTGAGAACAAAC-- s panTro1.chrUn_random 63537755 265 + 240967748 ATTAATTATAAATCAATGAAAAGAAAC---ACATTT----------CTCAATATGTGAAT---AAGATCA-AGAATCCAA-----TGGGTT---ATGGTTTTCAAAG--------------TTCTGAGGGAAAAACATGTAA--ATTTAAAATTACATATATTTGAAAAGTTATTTTCAGGTTTAAGGACAAAATGTAACT---------TAATACACAAAT-ACAATGTAAA--CAGTATAA--------TTACGTCAGTGAAATGCATTTAAAATTTGCTGAAAA----------TTTAGTTTATGAAGAAAAATAC-----------------TCTTCCTGAGAACAAAC-- s rn3.chr4 101179233 277 - 187371129 ATTAATTATA----AATAAACAGGGACATGACATTTTCATTAAGTACTCATTAAATAACTGTAAAAATGA-AAAAACTAA-------AGTTCACATTATTTTTATGGACCCAGATAAATTATTGTTAGGGGAAAA---ATAA--ACCTAAGATAAAATATTT-----AAACTATTT-----TTTGATGAGTAAAAGTAAAT---------TAAAATCAAAAG-AAAGCTTAAAATCAATATCAACAGGGATTTATTTTGATTAA----GCTCAGCATCAAATAAATA----------TTTAATATTTAAAGTAAAAAA-------------------------GAGAAAGAGA-- s canFam1.chr20 54069491 296 - 61172541 -agaaatagaggtggaaaatatgaaaa---agatta----------atgaatagagaaa----aaaataataaggtttaacacactgaatt---ggaacttcacaaa--------------tagtgaggaaaaggaaaacaagtatttgaggtgataaagat--ataaaact---------tctcaggaAGTACATTGATTGAGCCTTGATAAGACACACATAACAATATGAA-----TGTAG--------TAAGGATATCCACATGTAGACAAATTTTAGTGAAAATATGGGATACTTTAATACAAGAAATTAAAACCACCAAGAGTGGAAGGAATTTTCCTTAAAAGATAAAG a score=5036.0 s hg17.chr7_random 277433 22 + 778964 ATTGAGA-------------TA--AAATAAATGTGCA s panTro1.chrUn_random 63538020 22 + 240967748 ATTGAGA-------------TA--AAATAAATGCGCA s mm5.chr6 92748630 22 - 149721531 ACTGAGA-------------TA--AAATAAATGGATA s rn3.chr4 101179516 24 - 187371129 GTGGAAA-------------TATCAAATTATTGTGTA s canFam1.chr20 54069787 35 - 61172541 ATAAAGAAACTATTTTTTCCTA--AAAAGAATTTTCA a score=2360.0 s hg17.chr7_random 277455 12 + 778964 AA--CATCTAAATA s panTro1.chrUn_random 63538042 12 + 240967748 AA--CATCTAAATA s mm5.chr6 92748652 12 - 149721531 AA--CATTAGAATA s rn3.chr4 101179540 14 - 187371129 AAATTATCTTAAGA a score=1984.0 s hg17.chr7_random 277467 26 + 778964 -----------------GATGGAAACTATGTTAACACTGTGTG s panTro1.chrUn_random 63538054 26 + 240967748 -----------------GATGGAAACTATATTAACACTGTGTG s rn3.chr4 101179554 40 - 187371129 ACTCTCCGCTACTATGCAACTGAA---ATGTCAAAACAATGTA a score=8024.0 s hg17.chr7_random 277493 133 + 778964 AAATT----ATA-CACAATATGTGATATATCCATGTGAAGCA--------TATTTATGGAAGCATAAAAGAAAA--TGTTATCCCAAG---GGTTATATTAAATAAAAGAGTAAATTTGGTAATAGATGAATAACTTATTTTATATCAGTA s panTro1.chrUn_random 63538080 133 + 240967748 AAATT----ATA-CACAATATGTGATATATCCATTTGTAGCA--------TATTTATGGAAGCATAAAAGAAAA--TGTTATCCCAAG---GGTTATATTAAATAAAAGAGTAAATTTGGTAATAGATGAGTAACTTATTTTATATCAGTA s rn3.chr4 101179594 134 - 187371129 TAATTTGTAATAGCACAA-ATTTTATTTAATCATATGTTGAATCTTGCTTTACTACTTGAACCATTAAAG-----------TTTAAAG---AACTGTATTTGG-GGGATAGGGAGCTGGGGATGCAAAGGATAATTCTTTATAC-TCAGTG s canFam1.chr20 54070083 136 - 61172541 AAATT----ATC-TACAATTTACTTTTTATCCATATATATTA--------AGATTACCATGTTACAACAGAAAATTTATAATCCCATGTTTAATCAATTTTTTTCAGAGAGAAAATTCTGTGAAACATAAG--ATTGTTCTAATGAGAGTG a score=5581.0 s hg17.chr7_random 277626 65 + 778964 ---TAATGTGTATTT-----------AAGAGGTTTTTGTCACTAAATTATTAAA-------TATTGAGTGCAAATCCT---ATATACTG s panTro1.chrUn_random 63538213 65 + 240967748 ---TAATGTGTATTT-----------AAGAGATTTTTGTCACTAAATTATTAAA-------TGTTGAGTGCAAATCCT---ATATACTG s rn3.chr4 101179840 85 - 187371129 ---TAATAGCTTTTTACAGCAGAGAGAAAACATCTTTTTTAA-AAATAAATAAAGGGTGGCTTTTGACTGCAGATTTTTCAGCATACTG s canFam1.chr20 54070219 68 - 61172541 AAAACATTTTTTCTT-----------AAGATATTTCTATTGCTGTTTTGTTAAA-------CCCTGACCTTTTCTCCC---CCACATGG a score=1680.0 s hg17.chr7_random 277691 13 + 778964 TTTGAACAATACT---- s panTro1.chrUn_random 63538278 13 + 240967748 TTTGAACAATACT---- s mm5.chr6 92598735 13 - 149721531 TTTGAGCAAGTTA---- s canFam1.chr20 54070287 17 - 61172541 TTTGCATAATTTTTATT a score=9.0 s hg17.chr7_random 277691 13 + 778964 TTTGAACAATACT---- s canFam1.chr20 54070287 17 - 61172541 TTTGCATAATTTTTATT a score=138430.0 s hg17.chr7_random 277704 363 + 778964 ATTATTTTCTCAGCAAA---GATCAGCACTGAAAGACTGATTCCTGCATAGCCACTGACCAC-AGCTTCTGGAACAACAAAAGCATTGAATCATTAATCCTGAATGTGGCCAATGAGCAAG---AGATGAGGAAATCTACCCAGTTCATGACCAC-AAAGCAACTCACCAGCAGCTGGATGGCCTGGGTAG-CTTATTTCTCTGGAGAGACTCTTAGACAGTGACTCCTGATACAGAGATGCTGAGACTGCATTTTGTGCCTGGAGGAGAGAATTACCACGTGTG-ATTTGAGAGCATCAGTGTTCCTCCAGAAGAGACATTTCTAAATGCTGCTAGTGTGAAAAATGAGCTTATGTTCACGTAGCCCCTGGG s panTro1.chrUn_random 63538291 366 + 240967748 ATTATTTTCTCAGCAAA---GATCAGCACTGAAAGACTGACTCCTGCATAGCCACTGACCAC-AGCTTCTGGAACAACAAAAGCATTGAATCATTAATCCTGAATGTGGCCAATGAGCA-GTGCAGATGAGGAAATCTACCCAGTTCATGACCACCAAAGCAACTCACCAGCAGCTGGACGGCCTAGGTAG-TTTATTTCTCTGGAGAGACTCTTAGACAGTGACTCCTGATACAGAGATGCTGAGACTGCATTTTGTGCCTGGAGGAGAGAATTACCACGTGTG-ATTTGAGAGCATCAGTGTTCCTCCATAAGAGACATTTCTAAATGCTGCTAGTGTGAAAAATGAGCTTATGTTCACGTAGCCCCTGGG s mm5.chr6 92598748 365 - 149721531 ATTATTCTGTTATCAGAACTGATTTGTACCAATGGAGTAATTGTAGGATAGGCATTCATCACAAACTTCTGAACAGTCAGGATGACTGGGTCATACATCCATAACAGGACTGAGGTGGATG---AGATGATGAAGTCCACCCAGTACATGACCAC-AAAGAAAACCACCAGCAGCAAGATGGTCTGGGTGG-CCTTTTTCTCAGGGGATGCTCTCAG---GTGTCTGATGCTATGAAGATGCTTGCACTGCCTCTGATGCCTGAACAAGATTATCACCATGTATGTACTTGTAATCAGCATGACTCCTACAAGAAACACATCTCTAGAGGTTGTTACTGTTAAAATCAATCCCCTGATAATATAGTTCATTGG s rn3.chr4 101179925 365 - 187371129 ATTATTCTGTTATCAAAACTTATTTGTACCAAAGGAGTAATTGTGGGATATGCATTTACCACAACCTTCTGAACAGTCAGGACAACTGGATCATACATCCATAACAGGACTGAGGTCACTG---AGATGATGAAGTCCACCGAGTACATGATCAC-AAAGAAAACCACTAGCAGCACAATAGTCTGGGTGG-CCCTTTTCTCAGGGGATGCTCTCAG---GTGACTGATGCTATGAAGATGCTTGCATTGCCTCTGATGCCTGAATAAGATAATCACCATGTATGCACTTGTGGTTAGCATGACTCCTACAAGAAACACATCTCTCAAGGTTGTCATTGTTAAAACCAGTCCTTTAATAATGTAGTTCAAGGG s canFam1.chr20 54070304 362 - 61172541 ATTTGTTTCTCAGCACT---GATTAGCACCAAGGGACTG----TGTCATGGCCATTGACCATGAGCATCCGGATACATACCAGGATTGGGTCATTTGTCCATGTCATGCCTGTGGAAAATG---AAATGATGAAGTCCACACAATATATGATCAC-AAAACAACTTAGCAGCAGCAGAATTGTCTGAGTAGCCCTTTTTTTCCGGGGAGCTTTTTGGAGGGAGACTCTTGCTGTGAAGATGCTCTGACTGCTGCTTATGTCTGCACAAGAGAATTATTGTGTAACCCCCTGACAGGACCATAAGACCCATGAAGAAGACAGCTCTAAATGCCTTCAGTGTGAAAAAGAAGCCCCTGTGGATATAGATTATGGG a score=4596.0 s hg17.chr7_random 278067 14 + 778964 GGAAGAAAAACAGT s panTro1.chrUn_random 63538657 14 + 240967748 GGAAGAAAAACAGT s mm5.chr6 92599113 14 - 149721531 GAAGAGAGAACAGT s canFam1.chr20 54070666 14 - 61172541 CAAAAAGGAACAGT a score=273.0 s hg17.chr7_random 278081 1 + 778964 A s panTro1.chrUn_random 63538671 1 + 240967748 A s mm5.chr6 92599127 1 - 149721531 A a score=1019.0 s hg17.chr7_random 278082 11 + 778964 ATATTTAACAG s panTro1.chrUn_random 63538672 11 + 240967748 ATATTTAACAG a score=22155.0 s hg17.chr7_random 278093 136 + 778964 TACATTTTAAGAACCAATAA-AATTATTTTTAAAATCAAAGCAATTTTAAAGCTTTTACTTCATTAGACTCCCTGGCAA-GAAAGTCCTGGGAAGACAGAAAGTTTGGAGGATGTCAGAGGGAAGTTTGGGAAAAGTA s panTro1.chrUn_random 63538683 135 + 240967748 TACATTTTAAGAACCAATAA-AATTATTTTTAAAATCAAA-CAATTTTAAAGCTTTTACTTCATTAGACTCCCTGGCAA-GAAAGTCCTGGGAAGATAGAAAGTTTGGAGGATGTCAGAGGAAAGTTTGGGAAAAGTA s canFam1.chr11 19741675 134 - 75769841 TATGTTTTAAGAACCAATAAGAATTATTTTTAAAATGAAAGCAATTTCAAAGC-CTTATTTCATTGGATTCCCGGGTGACAAAAGCCTTCAGCGGGAGGAAAGTTTGGGGAG---CAGAGAGAAGAGGGTCAGACCTA a score=1246.0 s hg17.chr7_random 278229 13 + 778964 GAGGAATGTACGG s panTro1.chrUn_random 63538818 13 + 240967748 GAGGAATGTACGG a score=42353.0 s hg17.chr7_random 278242 356 + 778964 CCCACTCAG--CCTGAGTCACCTTCGCTACTGACCTCATCTTG---------TCTCGACTGAGTGCTCCTTTCAGGAAGCTGGTGTCTGGAAAACT--TCTCAATTTTAGTATCAATTATTATT--CAGAGGTTGAAAGGCAAGC-CTCCACCTAAAGTGCC-AGT--------CCTGGGGCCTTGGTGAGACC-----------CTCTGCTGGGGAGAAACTCCACTTCACC---------------------------------TGGGGGTTCTTA-TTTATACAAAATGGGGACATGACGGGGCAGCCAAGCAGCAGAAAACCAAATCATAAGCAAGAACCAAACTCTTGGGGAGTTTGATTCTTTCTGCTACATAGTGCACAAGTTCTGGAGAGACTATAGGGGTGAAGAATAATAAAAGAt s panTro1.chrUn_random 63538831 358 + 240967748 CCCACTCAG--CCTGGGTCACCTTCGCTACTGACCTCATCTTG---------TCTCGACTGGGTGCTCCTTTAAGGAAGCTGGTGTCTGGAAAACT--TCTCAATTTTAGTATCAATTATTATT-ACAGAGGTTGAAAGGCAAGC-CTCCACCTAAAGTGCCCAGT--------CCTGGGGCCTTGGTGAGACC-----------CTCTGCTGGGGAGAAACTCCACTTCACC---------------------------------TGGGGGTTCTTA-TTTATACAAAATGGGGAAATGAGGGGGCAGCCAAGCAGCAGAAAACCAAATCATAAGCAAGAACCAAACTCTTGGGGAGTTTGATTCTTTCTGCTACATAGTGCACAAGTTCTAGAGAGATTATAGGGGTGAAGAATAATAAAATAt s canFam1.chr11 19741840 413 - 75769841 CCCGCTGGGAACCTGGGTCACCTTCCCCACTGAGGACATCTTGACCTTGGCTGCTGGCCTGGACACTCCTGTTGGGAATTCATTGTCCAGGAATCCTGTCTGGGGTTTGATCTCTATTCTGACCCACAGAGGTTGAAAAACTGACACCCCAACCCCAGGACA-AGTCCTCTCTGCCTAGGACC------AGACCCATCTAGGCAACCCGGCTGGGGCATGAC-CCACCCCACTGTCTGAGTGAAAGCATGGGGTTCCGCTCAGGCATCGGGGTTTTCATTTTAAACAAAAAGAGG----GGAGGGGCAAAGAAGCCAAAAGGAAACAAACCTCAGGCAAGAGCAGAATTC-AGAGAAGGCAGGCTCTTCCAGCCCCGCAGGGTTCAAATCCCAGAGGGACTTTGGGGGCAGAGATGAATGACAAAT a score=27891.0 s hg17.chr7_random 278598 311 + 778964 tttatttttgaaacatcttgcatagttgccctggttggaatgcagcagcacgatcatagctccctgtagcctagaactactggctcaagtgatcctctgcctcaatgtccagcatagctgagacaacagtttggaactatcacaccaggctaaatgtttttaatgcttcaagttttttgtataaatggggtctcactatgttgacaaggctggtatcaaattcctggcctcaagcaattctatctcctcagccaatcaatatgccaggaatacaggcatgagacaccgtgcctggccAGCGCCTTTATAAT s panTro1.chrUn_random 63539189 311 + 240967748 tttatttttgaaacatcttgcatggttgccctggttggattgcagcagcacgatcatagctccctgtagcctagaactcctggctcaagtgatcctctgcctcaatgtccagcatagctgaggcaacagtttggaactatcacagctggctaaatttttttaatgcttcaagttttttgtataaatggggtctcgctatgttgacaaggctggtatcaaattcctggcctcaagcaattctatctcctcagcccatcaatatgccaggaatacaggcatgagacaccgtgcctggccAGCGCCTTTATAAT a score=31857.0 s hg17.chr7_random 278909 199 + 778964 GTTTTATTCTCCCAAGTTCTTCTCAAAAAAGTCAACATCCACCAAGTATCAGCTGAGATTTGAACTT-------------CAACCCTGGGCTGAACTCAGTGGC-AGGACTCT----------------CCATTC----CCAACAAGGGACAAATGGAGAAATAAATGGTGAGAGGGAGGAGCTTGATTCTGCCCATGCTAATTGGACACCTGTTGTGTGCTAGGAAGACACA s panTro1.chrUn_random 63539500 199 + 240967748 GTTTTATTCTCCCAAGTTCTTCTCAAAAAAGTCAACATCCACCAAGTATCAGCTGAGATTTGAACTT-------------CAACCCTGGGCTGAACTCAGTTGC-AGGACTCT----------------CCTTTC----CCAACAAGGGACAAATGGAGAAATAAATGGTGAGAGGGAGGAGCTTGATTCTGCCCATGCTAATTGGACACTTATTGTGTGCTAGGAAGACACA s canFam1.chr11 19742264 233 - 75769841 GCTTCACTGTCCCAAGCTTTCCTGGGAAAAGTCAGCATGCCCAAGGTGTCCGCTTGGATTTCAACCTGGCCTTGAACTCCCAACCTGGAGCTCAACGCGGTTACAAGGACCCTTGCCGGGCCCCCTCCGCCACTCCCCGCCAAGAGTGGACACAGAGAGGGGGCACCGGAGGGAGGGCGCAGCCTGACTCTGGCCATGCTAATTAGGCACCTACTGTATGCTGAGAAGACCCA a score=1610.0 s hg17.chr7_random 279108 17 + 778964 CAGAGGTCAATCCAAAT s panTro1.chrUn_random 63539699 17 + 240967748 CAGAGGTCAATCCAAAT a score=10911.0 s hg17.chr7_random 279125 69 + 778964 TCCAGCTCCAGCCACAGCAGGACAGCCATGGTGTAGAAGGCCTAGCCCAGAGGAGGGAGCCTTAGCAAT s panTro1.chrUn_random 63539716 69 + 240967748 TCCAGCTCCAGCCACAGCAGGACACCCATGGTGTAGAAGGCCTAGCCCAGAGGAGGGAGCCTTAGCAAG s canFam1.chr11 19742671 67 - 75769841 TCCAGCCTCAACTGCAGCTGGACGCACTTGGTCTCCAAGGC--AACGCAGAGGGGGGAGCCCCGCCGGC a score=3840.0 s hg17.chr7_random 279194 43 + 778964 AGGAACACCCCTCCATGGAGTATTGACATTCTGTTACTTCAGT s panTro1.chrUn_random 63539785 43 + 240967748 AGGAGCACCCCTCCATGGAGTATTGACACTCTGTTACTTCAGT a score=141238.0 s hg17.chr7_random 279237 1140 + 778964 TATACTGAAAACTAGTAGAAGGTAAGAGATGTTGTACTCAACCATTATAAGCAAGAAAATCCATTCAATCTTCTTTAATTTGGTTAAAATTAGCCT---TTATTAAAAGGCAGCACAGAGTAATGCTTGTCTGTGAGAATTTAAAAACATCATAGCAAACCACTCCGTTCTCAGTTTAAGAGGGA-------------AGGCGAAAGGCTTGTGTGGGAGAATAAGAAAAAAACATATTTATGTAATACTTTGAGTTTCTATT---GCTCCTAACCACC-ATTGCTACATAAGTATTCCAAAATATAGCTCTTCTTTATCCATCCTACTGTTAAAAAGTACCTCACTGATTTTGTAACCCCCAACTAATCCATCCTATAGTCCCTAGATGACCACAGAGGACTATTATCCTCTGCTTTTTACTGTCACTCTCCCCAGTCCAGCAAACTCATTCCTCTTTCTGCATAAGCC------TCCTGTGTTTCTGCCCTTTTTTATCTGCACCCTCTGCTGAGATTCTTTTGTCTTCACCCATCCCAAAGCCATCCATACTTCCAATGCATTACTAGGGGTAATTATCTCATTCACCCAGCCTAATTTTTAAACTTACCT----TCCTGATC---------------------CCACCCTCTCTTCACTCTGAACAAGATTTTACTA-GGTTGTTGTTAAGTTCTGGGGTTCGGAGAATCTGACTAGTGTGAGTTTCCCAAGGTAAAGGTAATGCCTTAATAATTTTCA-----CTTTAATTGCTCTTTGCGCAGTGTTTTGCACAAAATTTA-ACACAATAATTGCTCCCGGAGTAAATGCATAAATCTTTGTAATATCCT-ATTTGGCTCCCTTAGAGTCTGAAACTTTTCCCCTTCAACCATCCAGAGTCCTGTCTAACCAAA---GTGAAAATGGGG------------------------------------------------------------AACTCCCTCTTTCTGGCTGGCATCACTGCTGAGAATGGAAATAAATGCTGTCTATGCCAACTCCCTAGAACAAGTATAGGTTTCATCTAGACTAGTTTT-CAAAATGAGGAAACAGGATGCAGACAAATACTTTATTCCCACTTTTTGG-CCTGGGGTTTATTA-ACAAGGTGAAATTATACAGAAGAATAAATTAG-TTTAGCTGAGAAAAGAAAAAA-TGTATAGTTAATGGAGGGAAAAAATTGAAAATGCAAT-AAAACCAGAAGATGT s panTro1.chrUn_random 63539828 1164 + 240967748 TATACTGAAAACTAGTAGAAGGTATGAGATGTGATACTCACCCATTATGAGCAAGAAAATCCATTCAATCTTCTTTAATTTGGTTAAAATTAGCCT---TTATTAAAAGGCAGCACAGAGTAATGCTTGCCTGTGAGAATTTAAAAACATCATAGCAAACCACTCCTTTCTCAGTTTAAGAGGGA-------------AGGCGAAAGGCTTGTGTGAGAGAATAAGAAAAAAACATATTTATGTAATACTTTGAGTTTCTATTC--GCTCCTAACCACC-ATTGCTACATAATTATTCCAAAATATACCTCTTCTTTATCCATCCTACTGTTCAAAAGTACCTCACTGATTCTGTAACCCCCAACTAATGCACCCTATAGTCCCTAGATGACCAGAGATGCCTACTATCCTCTGCTTTTTACTGTCACTCTCCCCAGTCCAGCAAACTCATACCTCTTTCTGCATAAGCC------TCCTGGGTTTCTGCCCTTTATTATCTGCACTCTCTGCTGAGATTCTTTTGTCTTCACCCATCCCAAAGCCATCCATACTTCCCCTGCATTACTAGGGGTAATTATCTCATTCACCCAGCCTAATTTTTAAACTTACCT----TCCTGAACAAGATTTTACTATGTTGCTGTTCACCCTCTCTTCACTCTGAACAAGATTTTACTA-TGTTGCTGTTAATTTCTGGGGTTCGGAGAATCTGACTACTGTGAGTTTCCCAAGGTAAAGGTAATGACTTAATAATTTTCA-----CTTTAATTGCTCTTTGCGCAGTGTTTTGCACAAAATTTA-ACACAATAATTACTCCCGGAGTAAACGCATAAATCTTTGCAATGTCCT-ATTTGGCTCCCTTAGAGTCTGGAACTTTTCCCCTACAACCATCCAGAGTCCTGTCTAACCAAA---GTGAAAATGGGG------------------------------------------------------------AACTCCATCTT-CTCGCTGGCATCACTGCTGAGAACGGAAATAAATGCTGTCTATGCCAACTCCCTAGAACAAGTATAGATTTCATCTAGACTAGTTTTTCAAAATGAGGAAACAGGATGCAGACAAATACTTTATTCTCACTTTTTGG-CCTGGGGTTTATTTTACAAGGTGAAATTATACAGAAGAATAAATTAG-TTTAGCTGAAAAAAGAAAAAAATGTATAGTTAACTGAGGGAAGAAATTGAAAATGCAAT-AAAACCAGTAGATGT s canFam1.chr11 19743082 1177 - 75769841 TGTTCTG-AAACTGAAAGAGAACAGGAGCTGTAACTCCCAGCCATGGTTGTCAAGAAAATCCATCCCATCTGCTTT-GCTAGGTTAAAACCAACCTGTGCTGTCAACTATGAGCACAG-----TGCTTGGCTGTAAGAAGCTGAATGCATCTCTAAAAAAGACCATCTTC----TTGAAGATGAAGTGCTCAGAATTCAGGCCTCAGGCTTGTCTGGAAT--TAGGATGAAAAGATTATTTTCTAAAACTCTGAG-TTCCATTCATCCTCCTCACCACTAACTACCCCATAGCCCTCCT--ACCACCACTCTGCCCTGCCCTCTCTCTGGCTCAGAAGTCCCTCACCAACTCTGCAGCCCCTGCCAAGTCCAACTCCCAGT-CCTAGATGAGCACAGAGGCC--CCCACGTCTGGTTCCCACCCGGACCCTTCCTGCTTCAGCCAACTCTCCACTCTTCCTGCATATGCCCCCTCGCCCTGCTCCCCCGGCCTCCCTCACCCTGCTCCTCTGCTG----------GCATCCACACATCCCAGACCCAGCCAGCCTTC-----CACTACCAGTGGCAAGTGTCCCGGCCACTC--------------ACTTCCCTCACCCCCTGGCC-------------------------CCTCTCCTGTCTCTGGATGTGCGTGTATGGTGGTTGCTGGCAAATACCGGAGTTCAGAACATCCAG--AGTAGGTGTTTCCTGAAGGGCAGGTATATGGTCACTAATTCTGATTCAGCTTCAGTTGCCCTTCGCACAGCATCTTGCACGTGGTTCAGACACAGTGACTATTCCCTGGGTAAATGCATGCATAGCTGGAATGTCCTGATCTGACACTCCTAGAGTTTGT-CCCTTTCCCACACAGCCAGCCAGAGTCCTACATGGCCAGACCTGACAACACGGGGTTATCGCTGAACCTGACTTGAAGGTTTTCTGCGCTTTGTGAGGTACCTAACTTCCAAGAAAATTCCTCCCC-TTAGCAGAGATCTCTGTCCCAATTGCTAGTAAATGCACCCTATTACAACTTCCTACAGCAAGTGATCATTCCATCCAGACTAGTTTC-AGAAATTAAAAAACAGTGAGTAGAAAACCCTTTTATTCCCCTTTTTTGGTCCTGGGTTTTATTA-ACAAGGTGAAAT----------ATTGAATTAATTTTAGCTGGAAAAAGAGGAAA--GTGTCGATAACCGAGGGAAGGGGTGAAAACCACAGTAAAAACTAGGACATGT a score=208256.0 s hg17.chr7_random 280377 2385 + 778964 TCAGGAATTCAAAgtagttgatgcatagaaatgctactgatttttgtacattggttttgtgtcctaaaactttacttgcttatccgtttcaggaggcttttcaagttttccccaaaagtagttttggagaggctttagcattctctacgtagtgactcatattgcaaatggagaaa-gagaattcaatttcttttt--ctatttgtatgcctttttcttttctattggccgattgctgtggataggacttttaAATCTAATTAAattgtatttgttagatttttgtatattttaatatgtctccaattaattttatatctgtataatgtccccttataaaggaatatgtagctgttttatttagttattttattattgatgcacatttgagtttttttcagtttggaaaagtaccaaataatgctacttcgagcactttactacattggaaaatatgctggcaattctattgggtgt-atatacctagtagcagagttgctgggttctagagtgtgcttatgtacatcgtgta-tgtaaggagttactactcaagtggttttgaatgtggttataacagtttgcacacagaatggtataagaaagttccagttgcttgacatcatcactagtacttaattttgtcagttttcaaaaatgttaatgattgcatagtggtattcaattgtagttttcatatgcattgttctgatgcataagaatgtggatatgttcatctacttgttggcccttcggttctgtatgtggaactcctagtcatatctttgccaattttgttcaatgtatgcatctttgtttattaagtgatgggatttagcttaataatctagataaaaagcttttgccagatcaatatatgacaaatgttgatttccactttgttcttgcctttcagctctcctgaagctttttttttttatgaagagaaggttttaattctaataaagtccaatttgtcatatttttgtcttgataatttatgcattttgtgtcccaagaaatcttggcctgtgccaaagtcatggacatacttatctatgttatctactagaaatattgttttcaattttcaccttaaaatttaaaatccacttgtctcgaaatttgttaacaatataagataggttcatttctttctcacataaataaccagatgacccaaggctaattaccgagatgctgtcttctctccactgctcttctgtgcctgttttgtaatatacaaaatgtctaaatgtgtgagtctgagttggactctcgagtttttctagttttctttgtgcctattttttcattactaccatagatagcttttattactatagctttaatctaagtctgaatatatggcattgtaagctcacaaactttgtcattcttcaggacagtttttacagttctttgattttttaatatgtatttaaaattttaaactgattagacagtttccacaagatttctgccaaaatattgtattgtgaaaatggaaatcaataaatcaatttggggagaa--------------------------acactaataacatctaaacCAAACTTAAAGAGAACACCACAATAAGAAAAGAAATTGCAAAATTGGAATAAATATTTTCAACACATGAAATTACAAAGGGGCTCATGTTTCCATGAAGAGCActctctctctccctctctctctctctctcttttttttttttttttacagagactcactctgtcacccagtctggagtgcagtcgtgcaatctcggctcactgcaacctccgcctcccaagtttcagcaattcttctgtctcagcctcctgagtagctggggctacaggcttgggccaccattccccgctaatttttttgtaagtttagtagagacggattttcaccaggttcgccaggctggttttgaactcctgacctcaaataatccacctgcctcatcctcccaaagtgttgaaattacaggtgcgaggcaccAGAGCTGACCTGTAAAGACCTCTTAAAAATTAGTTAAAAAACAAACAAAACAGAAAAGGAGAAAGAAGAAACATCCACTCA-TTaaaaaaaaa--aaagaaaaagaaaagaaaagaaaaaaaGGCAAAAGACATTATTTTACAGGTCTAGTGCCCTGTGCCCCTCACTGTAATGGGGGTGGATATGGGCTTCACAGGACATGAAATTCATCAAACAGTTGCTGGTTGAAGGTGGGAAAATCTTGCGGGACCGACCTCAAGAGCAGATCCTGTGGTGCACTGTTTCATCCTGTAGCCCTGGAAAGAAAACCTGGCTGTGCCGTGCTTTATGTTTGCCTGCACTGGCCCTGTTCAGAGGCCTGAGCACGCATGGACACCTAAGTCTGCCCAAACTTTCCCCATCCCAATATTCTCTGTGGTATT s panTro1.chrUn_random 63540992 2413 + 240967748 TCAGGAATTCAAAgttgttgatgcatagaaatgctactgatttttgtactttggttttgtgtcctaaaactttacttgcttatccatttcaggaggcttttcaagttttccccaaaagtagttttggagaggctttagcattctctacgtagtgactcatattgcaaatggagaaaagagaattcaatttttttttttctatttgtatgcctttttcttttctattggctgattgctgtggataggacttttaAATCTAATTAAattgtgtttgttagatttttgtatatttcaatatgtctccaattaattttatatctgtataatgtccccttataaaggaataagtagctgttttagttatttattttattattgatgcacatttgagtttttttcagtttggaaaagtaccaaataatgctgcttcgagcactttactacattggaaaatatgctggcaattctgttgggtgtgatatacctagtagcagagttgctggtttctagagtgtgcttacatacatcgtgtagtgtaaggagatactgctcaagtggttttgaatgtggttataacagtttacacacagaatggtataagaaagttccagttgcttgacatcatcactagtacttaattttgtcagttttcaaaaatgttaacgattgcttagtggtattcaattgtagttttaatatgcactgttctgatgcataaggatgtggatatgttcatctacttgttggcccttcggttctgtatgtggaactcctagtcatatctttgccaattttgttcaatgtatgcatctttgtttattaagtgatgggatttagcttaataatctagataaaaagcttttgccacatcaatatatgacaaatgttgatttccactttgttcttgcctttcagctctcctgaaggttttttttt--atgaagagaaggttttaattctaataaagtccaatttgtcatatttttgtcttgagaatttatgcattttgtgtcccaagaaatcttggcctgtgccaaagtcatggacatatttatctatgttatcttctagaaatattgttttcaattttcaccttaaaatttaaaatccacttgtcttgaaatttgttaacagtataagataggtttatttctttctcacataaatgaccagttgacacaaggctaattaccgagatgctgtcttctctccactcctcttcagtgcctgttttgtaatatacaaaatgtccaaatgtgtgagtctgagttggactctcgagtttttctagttttctttgtgcctatttttgcattactaccatagatagcttttattactatagctttaatctaagtctgaatatatggcattgtaagctcacaaactttgttattcttcaggacagtttttacagttctttgatttttttatatgtatttaaatttttaaactgattagacagtttccacaagatttctgccaaaatattgtattgtgaaaatggaaatctataaatcaatttggggagAAGTTACATAGAAACAAAGCAAAAGAAAACACTAATAACATCCAAACCAAACTTAAAGAGAACACCACAATAAGAAAAGAAATTCCAAAATTGGAATAAATATTTTCAACACATGAAATTACAAAGGGGCTCACATTTCCATAAAGAGCActctctctctccctctctctctctctct----tttttttttttttacagagactcactctgtcacccagtctggagtgcagtcgtgcaatctcggctcactgcaacctctgcctcccaagtttcagcaattcttctgtctcagcctcctgagtagctggggctacaggcttgtgccaccattcccggctaatttttttgtaagtgtagtagatatggattttcaccaggttcaccaggctggttttgaactcctgacctcaaataatccacctgcctcatcctcccaaagtgttgaaattacaggtgcgaggcaccacagctgaccTGTAAAGATCTCCTAAAAATTAGTTAAAAAACAAACAAAACAGAAAAAGAGAAAGAAGAAACATCCACTCAGTTaaaaaaaaagaaaagaaaaagaaaagaaaagaaaaaaaggcaaaagaCATTATTTTACAGGTCTAGTGCCCTGTGCCCCTCACTGTAATGGGGGTGGATATGGGCTTCACAGGACATGAAATTCATCAAAGAGTTGCTGGTTGAAGGTGGGAAAATCTTGCGGGACCGACCTCAAGAGCAGATCCTGTGGTGCACTGTTTCATCCTGTAGCCCTGGAAAGAAAACCTGGCTGTGCCATGCTTTATGTTCGCCTGCATTGGCCCTGTTCAGAGTCCTGAGCATGTGTGGACACCTAAGTCTGCCCAAAATTTCCCCATCCCAATATTCTCTGTGGTATT a score=2280.0 s hg17.chr7_random 282762 14 + 778964 GAGCATGACACCCT s panTro1.chrUn_random 63543405 14 + 240967748 GAGCATGACACCCT s canFam1.chr9 43844829 14 + 53642819 GAGCAGGGCGCCGG a score=35715.0 s hg17.chr7_random 282776 237 + 778964 GTCTTCACTGAGCATGTGCTC-ATACAGTTTTGTAGccaa-ctcttcattt---tacaacaggaagactgagacctcccaaaaaggcaaagactggtccag---atcccaga----aattgggcagagcacagagtattagggagggatccagcttcctaggccttgcATGCACCCCACCCATCAGGTTTGCTTTGGAAATGAGAGCCCATGAGTCCTGGAAAACCCTGTGCTCTACTTTCTACCTGGG s panTro1.chrUn_random 63543419 237 + 240967748 GTCTTCACTGAGCATGTGCTC-ATACAGTTTTGTAGCCAA-CTCTTCATTT---TACAACAGGAAGACAGAGGCCCCCAAAAAAGGCAAAGACTGGTCCAT---ATCCCAGA----AATTGGGCAGAGCACAGAGTATTAGGAAGGGAGCAAGCTTCCTAGGCCTTGCATGCACCCCACCCATCAGGTTTGCTTTGGAAATGAGAGCCCATGAGTCCTGGAAAACCCTGTGCTCTACTTTCTACCTGGG s mm5.chr2 28473648 222 + 181686250 GTCCACGCAGAGCGTGCACTTAACGCTGTTCCGCGTCCAACCTGTCCAACCGGGTACAATCGAGCAACTGAGGTCT-GGAAAGAGGC-----------------ATGCCAGG-------TGGGCGGGGACCAGCGGAGAAGGGAAGGCTTCCGGCCCGTGGGGTCAGGGCTCAACCTTCGCGTAGGGTTTGCTTGGGGAATGAATCTCCTGAGGTCCTGGGGAACACTG-GCTA-ACCCCCTCCTTGTG s canFam1.chr9 43844843 221 + 53642819 GCCCGCGCTCAGCGCGCGCTT-ACGCAGTTCCGCGTCCAG-CCCCTCCTGG---TACAACTGGGAAACTGAGAC---CAGGAGAGGCGGGGATTGGCCCGGGGCGCGCGAGGGGAGAGGTGAGCCGAGTCCAGAG---AAGGAGAGGTTCTGGTCTCCCAGGCC-AGGGCTCGCCCCTCCTATGGGGTTTCCAGTGGGAA--------------TCCTGGGGACCCCTTCACCC--CCTCCCATCTGGG a score=1462.0 s hg17.chr7_random 283013 37 + 778964 CTTTCTACTCTTCAATGTTGTCACATAGGCGTGCAGG s panTro1.chrUn_random 63543656 37 + 240967748 CTTTCTACTCTCAAAAGTTGTCATGTAGGCGTGCAGG s mm5.chr2 28473870 27 + 181686250 GAACCTACCC---AA-------ACACGAGCGCACACC a score=6700.0 s hg17.chr7_random 283050 106 + 778964 CATGCACACACAAACACATCACACACACACA----------------GGCTTCTAAAGTGGAGATCTAAAGTGGAGATTCTAAAGTGAGGTTAGGGAAGA---GGAAACCAAAGAAGTGACAAAA s panTro1.chrUn_random 63543693 122 + 240967748 CATGcacacacaaacacatcacacacacacacacacacacacacacaGGCTTTTAAAGTGGAGATCTAAAGTGGAGATTCTAAAGTGAGGTTAGGGAAGA---GGAAACCAAAGAAGTGACAAAA s mm5.chr2 28473897 85 + 181686250 C---CCTACTCACTCTCGATAGATCTACAGA---------CTTCCTAGGTTTCCGAGGAAGGGTGGGACAGTGGAGGTGGTGTGGTGAGGT---GGAAGA------------------------- s canFam1.chr9 43845074 93 + 53642819 CACGCGCCCACAGGTACAT---ACACACACT----------------GACTTCACAG-------------ATGGGGGCCATGGGATGGGGTCGGAGGAGGAGTGGACACTGCGGAGGTGACAAGA a score=77470.0 s hg17.chr7_random 283156 466 + 778964 GGGGAAGAAACAGTAGAT-----GCAGCTTTGCCATGAGGCAGAGGCATCCACTCCCCCAGCTACATGACCAGGAGCTGACA----GCAT-----GCGATG-------AAGGATC-------CTCCAGGTTCCCTGGGTTCTTCCAAGCCTGGGGACTTTCCCA-GCTGTTTCAAGAGGACAGG-ACTGGGGTTGTGACTCCCACTTCTGTGGGCACCTGGAACTAAAATGAGCTATGCCCTCCACCCACCACCCCGTGTGATATAAAGACAGGCTACGGGAAAGAAAGCCTTTGTTTTCTCCCTCATAAATAGGGGTACTGAGAAGGAATAA-----------TACCAAGG--ATTCTAGATACTCATAG--GTGTCTGCCGCCCTTGGCTTTTCATTGGTAAATCACTGTGCTTTGAGACTCTGGGAAGAGGCTTTTCAGTTTCTAGAGGTCCTTCAGAGAAGAGAG-----------AGGCCT--AGAGACTTGGGCGG-ATGAGGACTTGGAATAAAGCAC s panTro1.chrUn_random 63543815 466 + 240967748 GGGGAAGAAACAGTAGAT-----GCAGCTTTGCCATGAGGCAGAGGCAACCACTCCCCCAGCTACATGACTAGGAGCTGACA----GCAT-----GCGATG-------AAGGATC-------CTCCAGGTTCCCTGGGTTCTTCCAAGCCTGGGCACCTTCCCA-GCTGTTTCAAGAGGACAGG-ACTGGGGTTGTGACTCCCACTTCTGTGGGCACCTGGAACTAAAATGAGATATGCCCTCCACCCACCACCCCGTGTGATATAAAGAGAGGCTATGGGAAAGAAAGCCTTTGTTTTATCCTTCATAAATAGGGGTACTCAGAAGGAATAA-----------TACCAAGG--ATTCTAGATACTCATAG--GTGTCTGCTGCCCTTGGGTTTTCATTGGTAACTCACTGTGCTTTGAGACTCTGGGAAGAGGCTTTTCAGTTTCTAGAGGTCCTTCAGAGAAGAGAG-----------AGGCCT--AGAGACTTGGGCGG-ATGAGGACTTGGAGTAAAGCAG s mm5.chr2 28473982 410 + 181686250 -AGGAAGAGGCAGAAG-------GCAGCCCTGTCTTGGGGCTGAGGCGTCCAGTCTCCTAGCAACATTTGGGGGTGCCCATA----GTACGAGAGGCGCTG-------ATGGACCGAGAGATGTTAAGATTCCTGGGGT--TTGCTTGTCTGGGGCCATCCTCA-GACTGGCCTGGAGGGCAGG-GCGGAGGTCCTTA----------------------------------------------------------GTGTG------GAGGAGGCTGCTG---AGGAGACATTAGTTTCCTCCTTTGCACTTTAGGATGCTTGGCCCTTGTGACTCGTCCCCGCCCCCGGGG--GTTTCAGGGGCTTGTGG-AATGTCTTTTGGCTTTGGTTCTCCTACAATGACCCA-------TAAAAATTCTAGGAAAATGCCTTCC---CCCTGGTGGACTTGCTAAGCAGCCTT-----------AGGGTTTGAGTGACTTAAAGGC-CAGAGTAACTAGAGGGAGGCAA s rn3.chr3 7497329 411 + 170969371 GAAGAAGAGGCAGGAG-------GCAGCTCTGTCTTGGGGCTGAGGCGTCCAGTCTCCTAGCAACATT-GGGGGTGCCTATT----GTACGGCAGGCGCTG--------TGGACAGAGAGATGCTAAGATTCCCAGGGT--CTGCTTGTCAGGGACCATCCTCA-GACTAGCCTGGAGGGCAGG-GCGGAGGTCTTTA----------------------------------------------------------GTGTG------AAGGAGGCTGCGG---AGGAGACCTCAGTTTCCTCCTTTGCACGTTAGGATGCTTAGCCTTTGGGA--CCGCCCCCTCCCCGGGGGCGTTCCAGGGGCTTGTGG-AATGTCTTTTGGCTTTGGTCCTTCA---ATGACCCA-------TAAGAATTCTAGGAAAATGCCTTCC---CCCTGGTGGACTTGGTGAGCAGAGAGCGAGTGGCCTTAGGGTTTGAGTGACTTAAAGGC-CAGGGTAACTCAGGGA------ s canFam1.chr9 43845167 461 + 53642819 GGGAAAGAAGAAAGGGATTGGAGGCAGC-----CATGGGGCGGGGGCATCCAGTCTCCTGGGAGGATGTCCAGG-GCTCATACGTGGCAAGGGGAGACATGCCCGGCTGATGACCGGGGCTCCGCAGGGTGCCCAGGGGG-CTGCCTGGCTGGACACTTTCCTAGGGCACCTGGGGAGGACAGGCTCTGGGGTCCTGG--CACACCATCCTGGGCACCTAG-ACTAGGAAGAGA-------------CACCCGCCTAGGTG-------GAGGGGCTACGA---GACAGGCCTCAGCTTACTCCTCTGAAGGTTGGGCTGCATAGA--GCAGGG-----------CACCTAGG--GTCCCACAGGCTTGTGGAAGAATATCTTGGCCCTGGATCTCCATCCCTGACTTACTCCGCTCCCAGGC-CAGGGAACATGCTTGGGACTGCCTGGAGGTCCTTCTGAGCAGAGGG-----------CAGCCT--GGGGGCTTGAGGGGAATGAGGAGCTGGGT--ATGCAG a score=2667.0 s hg17.chr7_random 283622 67 + 778964 AATGT-GACAATGCACTGGG------CTCTGGAGTGT-GGGGCCCAGAAAAAAATACTAGTTTTTTGGGCTGTCC s panTro1.chrUn_random 63544281 67 + 240967748 AATGT-GACAATGCACTGGG------CTCTGGAGTGTGGGGGCCCAG-AAAAAATACTAGTTTTTTGGGCTGTCC s mm5.chr2 28474392 52 + 181686250 ACTCTAGACCATTC------------CTCCAGGATCC-AAGGACAAG---ACCACCCTAG----TTAGAATG--- s rn3.chr3 7497740 61 + 170969371 ------GACAAAACTCTAGACCATTCCTCCAGGGTCC-AGGGACAAGACCACCACCCTCG----TTAGAATG--- a score=79089.0 s hg17.chr7_random 283689 332 + 778964 TTGAGGTCCTCATTCGGAAGT---------GGAAGAAAATAATGTC----GCCGAATGCTGTTAAAATGTTTAATGAGTGCACAGCACACCCAACG-AGGCTGAGGAAAATAGGAATCAAGGGAGGCTTCCGAGGTCACTTTTATGGCCCTTGGAGCCTTCAGATACTGCTCCTTTTCCCAG--GGGTCCCTGAAGAGCCACTGCCTTGAGAATTCCCCAGTGCAGGTACCTGTTTTGT-----GATGCTTCTGCCT-GGGACTTCAGTGCTAGCGGAGGCCTCTAGGTGGCGGCAGACCCCGTGTTTCTTGTGCCCGCTGGACTTTACTGGAGTAGCTGGAGCCGGGGGAGAG s panTro1.chrUn_random 63544348 332 + 240967748 TTGAGGTCCTCATTCGGAAGT---------GGAAGGAAATAATGTC----GCCGAATGCTGTTAAAATGTTTAATGAGTGCACAGCACACCCAAAG-AGGCTGAGGAAAATAGAAATCAAGGGAGGCTTCCGAGGTCACTTTTATGGCCCTTGGAGCCTTCAGATACTGCTCCTTTTCCCAG--GGGTCACTGAAGAGCCACTGCCTTGAGAATTCCCCAATGCAGGTGCCTGTTTTGT-----GATGCTTCTGCCT-GGGACTACAGTGCTAGCGGAGGTCTCTAGGTGGTGGCAGACCACGTGTTTCTTATGCCAGCTGGGCTTTACTGGAGTAGCTGGAGCCGGGGGAGAG s mm5.chr2 28474444 320 + 181686250 -TGTGATTCTTATTTGAAATG---------GGGTCAGGGTCATTGCCTAGACTGAAAG-----AGGAGGCCCCCTGAGTGAGCCAGAGTCCCAGAGCCATCAGAAGGAAAGAGGGGTGAAATGAGGCTCCTGAGGTCTTTGTGGTAACCCCTGAAACATACAGGTCTTGTTCCTTTGCCCAGCTGGGGCCTGGGAGACCTGCTACCTTGACAACCCGCAAACAAAAGGTAGTGTTTTGTTTTCAGGGTTTCTTGCCTGGGGGCTGTAGTGCTGGTACTGACCACTGGGGGGCAGCA------GTATCCTTTTAGTC-----------AATGGAGCAACTGCGG--GGGAGGGGG s rn3.chr3 7497801 323 + 170969371 -TGTGGTTCTTATTTGGAAAT--------GGGGTCCGAGTCATTTCCTAGACTGAAAG-----AGGAGGCCTCCTGAGTGAGCCAGAGCCCCAGAGGCATCAGAAGGAAAGAGGGGAGAAATGAGGCTTCTGAGGTCTTTGTGGTAACCCCTGAAACCTACAGGTCCTGTTCCTTTGCCCAGCTGGGGCCTGGGAGACTTGCTACCTTGACAACACGCAAACAAAAGGTTGTGTTTTGTTTTCAGGGTTCCTTGCCTGGGGGCTGTAGTGTCGGTACTGGCCACTGGGGGGCAGCA------GTGTCCTTGTACTC-----------AATGGAGCAACTTGAGGGGGAGCAGAG s canFam1.chr6 76033345 325 - 79106041 TCAAGGTCCTCATTTGGATGTACAGGAGTGGGTGCAGAATCACTCTTCTGGCTGCTTG-----AGAGTGCTGTGTTAGTAAAGAGGACACCATGGG--AGTGAACAGAAAAGGGAGTAAAAGGAAGCTTTTGAGGACTTTTAATCTGCCTCTAGAG---GAAGATCCTGCTCTTTTGCCCCT--GTGATTCTGGAAAGCCACTGCTTTGAGGACACCCAAATAAAGGCATCCCTTTCTT-----TGGTAGTGTGCCT----------GTGTGAGACTGGACAACACGATGCAGGAAGCCTCCTTGTCCATGGCACCTAGAGAGTTCTGGTGGAGGAACTGGAGCAGGAACAG-- a score=1008.0 s hg17.chr7_random 284021 4 + 778964 ACAG s panTro1.chrUn_random 63544680 4 + 240967748 ACAG s mm5.chr2 28474764 4 + 181686250 ACAG s canFam1.chr6 76033670 4 - 79106041 TCAT a score=43545.0 s hg17.chr7_random 284025 394 + 778964 GCTGAGGGCCT----------------------------GCAGCTC----CTGTTATCATTCTTGATCTCCACATTATTGGGTGACCGAAAGCAGGAAAGACTTTGTGATTTTC-CATGTTATTTTACTCAGCGGCTCTTCCCCTAGCACTCACCCTGTGGCAGCTACCTTGGTAGGTTCACCATGTGGTACCAAAAACGATTATGTTATCCCTGCATCCCCGCGGGGAGCCTACAGTCTGAGGACTGCAGGACAAAAACACTAAAGCAAGTACATGCGAAAGAAAAGAGCATTT----TATAATGGAAATAAAGTAGAATGTTGGGAGGGAGGGCTGGAGAGAGGTTGCCTGGAGGGGACATGAATACCTCACTGA-GCTGGCATTATGTTGTGATGAGAATGACAA-----------------CTGCGCAGGTGTGGAAAGTGTGTC s panTro1.chrUn_random 63544684 394 + 240967748 GCTGAGGTCCT----------------------------GCAGTTC----CTGTTATCATTCTTGATCTCCACATTATTGGGTGACCGAAAGCAGGAAGGACTTTGTGATTTTC-CATGTTATTTTACTCAGCGGCTCTTCCCCTAGCATTCACCCTGTGGCAGCAACCTTGGTTGGTTCACCATGTGGTACCAAAAATGATTATGTTATCCCTGCGTCACCGCGGGGAGCCCACAGTCTGAGGACTGCAGGACAAAAACACTAAAGCAAGTACATGCGAAAGAAAAGAGCATTT----TATAATCGAAATAAAGTAGAATGTTGGGAGGGAGGGCTGGGGAGAGGTTGCCTGGAGGGGACATGAATACCTCACTGA-GCTGACATTATGTTGTGACCAGAATGACAA-----------------CTGCGCAGGTGTGGAAAGTGTGTC s canFam1.chr6 76033674 420 - 79106041 GCAGAGGCCATTTTGGTTGGTTGTCTCCCTTGCCCAGAAACAGCTTGAAACTGTTAGTAGCATTTTTCCCTGCAGTCTAGGTGGTTAGAAGGAGAGGTGGGCTCTAAGACCTTCTCatgt--attcattcagtaactatgtcctaag----caccctctgccaggtaccttggtgggccca-tgtgtggagctgaaaat-actaaggtctccctg-----ccgttaggaactcacagtctggagat----ggataaaagcacaaaagcaaaggcacgtgatagaagacagcaagtaatatgtactacaaatgaagtgtgctat-------gaaggctgg-gagccattggataggaaggtatgaaaggccttactgaggatgatgt--tgctgggaacagaatgacaaaagggagctagacgttcatgagtctgggtgcagagtgtc-- a score=69868.0 s hg17.chr7_random 284419 595 + 778964 AGGGAAAAGCCACTCTTTGTGAAAAGACTCAGAGGCACAAGTCAGTTTAGCAGAGGAGGTTATAACGG-GACAAGTGTGGCTGCAGGCAGCCTGAGA-------AAGAAAGGAACAGAGGGGAGGGTGTATCCTGGGGCCTGAAAGAGGAGGttagtcat---ttgcccgtctgtgacaacattgctctga-------atttta----gcacattttgacaacaaatactatctcacaacttttgtgaac-cagaatctcgatatagcttagttgggtgcctctgcctcaaggtcccctatgaggctgggactgtgatttcaactgaagctggatttggggagagatcagcctccaatctgcctcatggaaattggcaagattcagtgtgaactgagaaccccagtttctttcttttgattggcctgggcagttcttcagttctctatcatgtggg-tctgtgcctagagcatcttaggaca-ctggagatcgcttccTCATCTTGAGGATTACAATACagagatggaaaatgaaagagatagacagacgtatgcacagaaaaagagaaagggagacagagagattgagagagGACGCACAGGACAGA-GCAAGTGGGAGG s panTro1.chrUn_random 177450649 596 - 240967748 AGGGAAAAGCCACTCTTTGTGAAAAGACTCAGAGGCACAAGTCAGTTTAGCAGAGGAGGTTGTAAAGG-GGCAAGTGTGGCGGCAGGCAGCCTGAGA-------AAGAAAGGAAGAGAGCGGAGGGTGTATCCTGGGGCCTGAAAGAGGAGGTTAGTCAT---TTGCCTGTCTCtgacaacactgccctga-------atttta----gcacattttgacaacaaatactatctcacaatttttgtgaac-cagaatctcgatatagcttagttgggtgcctctgcctcaaggtcccctatgaggctggggctgtgatttcaactgaagctggatttggggagagatcagcctccaatctgcctcatggaaattggcaagattcagtgtgaactgagaaccccagtttcttcctgttgattggcctgggcagttcctcagttctctatcatatggg-tctgtgcctagagcatcttaggaca-ctggagatcgctcccTCATCTTGAAGAATACAATagaaagatggaaaatgaaagagatagacagacatatgcacagaaaaagagaaagggagacagagagattgagagacgaaacacaggagagaAGCAAGTGGGAGG s canFam1.chr6 76034094 541 - 79106041 agaaagaagggatcactgctgcagacactca-ctacagaagccaatttggcagatgaggtgaaagagacggccagtgtggctgcagggaaactaggagagcagtgaggaaggaagagggcaggaagag-atgCTGAGACCTGGTAGA--Ctgttagttatctgttgttcctctgttattacattgccccaataccttcatcttaaaatgcatatatt---------taatttctcacaggttttttggatgaaggatccaggta---attagcttggttcctcagcctcaaggtatgtca-gaggctgtggctgtg------actgaggccagactagcagag-gattttctcccaagtttgctcacatgatt---ccagatgccatttggactcagagcctgagtttctgtgtgtcttttggccttggcactgccttggttctctgccatgtgagctcta----tatggcagctgaaaacatctgta--------------cttga--atttaggttcagggatagagaa--------------------------agtaaaagggaaagggaggaaaa------gagaagggaaacatgagaggaa-gtaactaggaag a score=83375.0 s hg17.chr7_random 285014 915 + 778964 AAAATAATAGCTGTTTTAGAAATATAACTTTGGAAGTTGCAGTAGACTAtgtgattccccaccatattcacattccagaacattaatccccagtgtaatggccttagcaggtcagaggtaattaagtccaaagcatgaggacctcatgatagcgattaccggctttgtaaaagaaactgcagaaggctgtctctccctctctctgctaaatgagaatacaacctgaagtctggagtttgaaactcacaagagagtccttaccagaccccaaccatgctggaagcctatctcaaatttctagcctccagaactaaattcttttgtttataagttgcctagtctatgttttttggtatagaagtctgaacTAAGTcagaagtgataacctatcacatttgttgtattctctttgacagaaactagaaacaggtccccaaagagttcaaccaatgactagcagaaattcttcagtttgcagaatgacggataagaaaagatagaacttgtcgaaagactgaaatttattccacttatgagacttctaaaaagtggctaaaattggtcggaaccaatatggtcaactagagtctgtgtgaaataagctcactgatgtaagagcccaaatttccatcacatgttttgtactaactgtccccaaatttgcacatgacctgtgtgtagcaagaaaagatggctgttcatgcccagtgactttccatacatttttcctttcagcaattccctgctaaacaagaagccacctcctaaacctttctgagaatattactacctttaagtaagcacagggaaagaggcttcagctggaatccaatgtctttgttggAAACCCGGTGTTATAGTATCGGCTTCTGAGGCACTGAGCGGTGAGCTGCGTTTTTAAATAACAGAGTCACT s panTro1.chrUn_random 177451245 915 - 240967748 AAAATAATAGCTGTTTTAGAAATATAACTTTGGAAGTTGCAGTAGACTAtgtgattccccaccatattcacattccagaaccttaatccccagtgtaatggccttagcaggtcagaggtaattaagtcctaagcatgaggccctcgtgatagagattactggctttgtaaaagaaaccgcagaaggctgtctctccctctctctgctaaatgagaaaacaacctgaagtctggagtttgaaactcagaagagagtccttaccagaccccaaccatgctggaagccaatctcaaatttctagcctccagaactaaagtcttttgtttataagttgcctagtctatgttttttggtatagaagtctgaaTTAAGTcagaagtgataacctatcacatttgttgtattctctttgacagaaactagaaccaggtccccaaagagttcaaccaatgactagcagaaattcttcagtttgcagaatgacagataagaaaagatagaacttgtcaaaagactgaaatttattccacttatgagacttctaaaaagtggctaaaattggtcggaaccaatatggtcaactggagtctgtgtgaaataagctcactgatgtaagagcccaaatttccatcacatgttttgtactaactgtccccaaatttgtacatgacctgtgtgtagcaagaaaagatggctgttcatgcccaatgactttccatacatttttcctttcagcaattccctgctaaacaagaagccacctcctaaacctttctgagaatattactacctttaagtaagcacagggaaagaggcttcagctggaatccaatgtctttgttggAAACCCGGTGTTATAGTACCGGCTTCTGAGGCACTGAGCGGTGAGCTGCGTTTTTAAATAACAGAGTCACT a score=20438.0 s hg17.chr7_random 285929 178 + 778964 CACAACTTA-GTGTTGTTGTGAGA---CTTTGTTGGGGGTGCCCACCACATAGGCTGAGATGAGGCATATACATGTGATTCCAAATATAATGCACAGCACTGGAATA--TTTAATGC--CAGAAGACAGTATCTG-ATTTTCTTTTGATTTCAACCTCTTCTGCTGTAGAATGGAAAAATAAGGCCA s panTro1.chrUn_random 177452160 182 - 240967748 CACAACTTAAGTGTTGTTGTGAGAGACCTTTGTTTGGGGCACCCACCACATAGGCTGAGATGAGGCATATACATATGATTCTAAATATAATGCACAGCACTGGAATA--TTTAATGC--CAGAAGACAGTATCTG-ATTTTCTTTTGATTTCAACCTCTTCTGCTGTAGAATGGAAAAATAAGGCCA s canFam1.chr6 76034747 170 - 79106041 cacaggtca-ggatcgctgggagc---cattgtaaagactgcTCCCCTCAGAGACCAAAATGAGGCAACTGGGTCTCATTCTAAATATAACAGGAAACAACTTAACAGCTTTACTACAGAAGATGACAATGTCTGCATCTTTGTGCATTTCCAGCCT-------------ACATTAAAATGAGGCCA a score=35169.0 s hg17.chr7_random 286107 491 + 778964 TATATATAAAatatatatcttttatgtatacagatatatgaaatatgtatcttttatacataaaggtgtatatgtataagtttatatattatatataatatataaatat-attatatatatatacatatattatatatatatatatatatatatatatatatatatatatata--tagtatatatatttttttgagacacagtctcgctctgtcacccaggctggagtgcagaggcacgatcatggcttaatgtaatttctgcttcctgggctcaagtgattcttacacctcagcctcctgagtggctg-ggattacaggcatgcatcaacacacctggctaatttttggatttttagtagagaagggtttttgccatgctggccatggctggtttcaaacccctggccttaagtgttccacccgtcgccttggtctaccaatctgctaagattacaggcaagagccactgcatccAACTGATTTTGATTCATTC s panTro1.chrUn_random 177452342 441 - 240967748 TATATATAAAATATATATCTTTTATGTATACAGATATATGAAATTTGTATCTTTTATACATAAAGGTGTATATGTCTAAGTTtatatattatatataatatataaatatga---------------------------------------------------atatatatataattagtatatatatatttttgagacacagtctcgctctgtcacccaggctggagtgcagaggcacgatcatggctcaatgtaatttctgcttccttggctcaagtgattcttacacctcagcctcctgagtggctgaggattacaggcatgcatcaacatatctggctaatttttgcatttttagtggagaagggtttttgccatgccggccatggctggtttcaaacccctggccttaagtgttccacctg---ccttggtctaccaatctgctaagattacaggcaagagcaactacatccaaccGATTTTGATTCATTC a score=2966.0 s hg17.chr7_random 286217 51 + 778964 ttatatatatatacatatat---------tatatatatatatatatatatatatatatat s panTro1.chrUn_random 235754132 55 - 240967748 ttatatata-----atatataactataactatatatatatatatatatatatatatatat a score=83878.0 s hg17.chr7_random 286598 665 + 778964 TATCTCATATATCACCAAAGACTGTTTTTGGAAGTTGATGTTAGCATAATCCCATTATGCATACTTCAGGGCTGGGGAG-ACCGGAAGCACACAGTCATTTTCATATGGTCACA----GAAATGAAAA---GGAAAAGAAGATTTTAACCCAACTCTGTTCTCTCAAACCTGGGGCCCTGGCTGTATTT--AGATCTTTTTGGGGAGTAAGGGGCATAATTGTGTTTGCATAACTGTTTACA---GGAAAAGAGTTGACATGGGAGATTAGGGTGAGC-AATCAGCAGCCCAGCAGGGCCTTCGCATAGAT-TTATGGAGGAAAAGTGCTCAGGGGATAAAACCTT-GAAGAAGTTAACAGACTTCCCTTGTGACAGAACCTAACA-GAATTTAGAACTTTGGGAACCAGACACCCACATTCTAGAGACAGCCCTGTATCTAGCTAATTTCATGGGAGATGCTTGAGAGATCACTGTGTTCTCATTGTGTGCTATATTCCTA--------ATCTGTTGCCTGAGAAAGGCTCAAAGTGAGAGCTTTTTCTGGCAATATACATATTGGATCAGCCCACATCCTTGATACCACTGGCCATTCGACAAGAGGCAAACACAG------GTAACACAGTGAAGCCCAGGTCAGGTCCGTCCATGCCAGGCCAACCGTCTCATCTAATCTGGGCAACCCGAC s panTro1.chrUn_random 177452783 666 - 240967748 TATCTCATATATCACCAATGACTGTTTTTGGAAGTTGATGCTAGCCTGACCCCATTATGCGTACTTCAGGGCTGGGGAG-ACCTGAAGCACTCAGTCATTTTCATATGGTCACA----GAAATGAAAA---GGAAAAGAAGATTTTAATCCAACTCTGTTCTCTCAAACCTGGGGCCCTGGCTGTATTT--AGATCTTTTTGGGGAGTAAGGGGCATAATTGTGTTTGCATAACTGTTTACA---GGAAAAGTGTTGACATGGGAGATGAGGGTGAGC-AATCAGCAGCTCAGCAGGGTCTTCGCATAGAT-TTATGGAGGAAAAGCGCTCAGGGGATAAAACCTTAGAAGAAGTTAACAGACTTCCCTTGTGACAGAACCTAACA-GAATTTAGAACTTTGGGAACCAGACACCCACATTCTAGAGACAGCCCTGTATCTAGCTAATTTCATGGGAGATGCTTGAGAGAGCACTGTGTTCTCATTGTGTGCTATATTTCTA--------AGCTGTTGCCTGAGAAAGGTTCAAAGTGAGAGCCTTTTCTGACAATATACATATTGGCTCAGCCCACATCCTTCATACCACTGGCCATTCGACAAGAGGCAAACACAG------GTAACACAGTGAAGGCCAGGTCAGGTCCGTCCATGCCAGGCCACCCGTGTCAGCTAATCTGGGCAGCCCGAC s canFam1.chr6 76035259 651 - 79106041 TATC-CACATACACTTGATGATGTCCCTAGGAAGTAGATTCCAGCCTGATCCCACTATGCAGGTTGGGACACTGGGGAATACATGAAAGACACAATGA-----ATAAGAACACAATTGGGAATACAAACAGACAAGAAAAGGTCTGAATTCAATTCTGTCTCCTGAAAATTAGGACTCTAATTACATTTCCAGAGAGTTGTGGCTA-----GGGCA------TGTTTAACTCATTGTGTACAGTTGTTAAAGAGGTGACATGGGTGAGAAAGGTAAGCTAGTCAACTGCCAAGAAGGGACTTTGGATAGGTATGACTGAACAAAGGGGACCAGGTACTGGAATCTT-GAAAAAGTGACCTCACCTCCTTGGTGATAGGCCCCCAAATGAACTTAGAACTCTGGTGACTAGGCACCTAGAGTCTAGAGACAGCCTGCTTTCCAGCTCACTTGACTGGAGACATTCAAGAGTACAAGAGGTTC----TGT-TGCTATATTCCTACTTTCAGGGGCTCTGGGCTCAAGAAAGTCCAGA--CAGAGACTTTTATATCATTGTAGATGTTGGCTCAGCCCTCTTCTCCAGAGCTTCTGGTCATGTGGTAGGAGACACCAACAGCTCAGAGCAGTACACCGGAGAGCAAGCCA------------------CAACTGTG--ATCCCACCTGAACAGGCCAAC a score=1634.0 s hg17.chr7_random 287263 22 + 778964 CCTGCCTACCATTATCATGTGT s panTro1.chrUn_random 177453449 22 - 240967748 TCTGCCTACCATTACCCTGTGT a score=67958.0 s hg17.chr7_random 287285 602 + 778964 TGCAGGGGGAGCAGGAAAGGAGGGG---GCTCTTTCT-CACAGGGGCAGGTTGTAAGGCATTGGAACCCTGGCAGGTATGTCATGTTCGTA-CCCAGGTCATGGCTGGTGGAATAAAAAGTTGAGCATT-GTGGAC-CAAGTGTGTCTACTCAGATGTGAATCCCAAGGCCTTAAGCTGTCCTCGGGTTTCCTCATTGGCTGGGGGTCTATGCAGATACTCCTATGTTCCTGATCTAGGAAACAGAATTTCTAATGGAGATGTCACCTGGTGGTAAAAACAAAGGAGATAATTAAtttttttt-cttttttcttttttttttt----CTGCTTCGCTGCTGGGAACACTCTTTGTAGAGTTTCATT---GAAA-TCATTGAGCAGATATTTGATGGGTTCAAGTCCCCCATCTCCTTGGACAACTGGCAGGTTCACCACACCCCCAAGCATGGCATACAGTGAGTTACGGTGAGAGCAGGCACATGGGGGTCTCTACAGACAGGGATCTGACAAAACCAGGATGGGCCCAGGATCCAGACCCAAATAT-GGAATTTCTCTGGG-CTCTCTCTTAGGGGATTTCCATGAGTGACCCAAAGATCTGCCTCCCAAA--AATCTAG s panTro1.chrUn_random 177453471 610 - 240967748 TTCAGGGGGAGCAGGAAAGGAGGGG---GCTCTTTCT-CACAGGGGCAGGTTGTAAGGCATTGGAAACCTGGCGGGTATGTCATGTTCATA-CCCAGGTCATGGCTGGTGGAATAAAAAGTTGAGCATTTGTGGACTCAAGTGTGTCTACTCAGATGTGAATCCCAAGGCCTTAAGCTGTCCTCGGGTTTCCTCATTGGCTGGGGGTCTATGCGGATACTCCTATGTTCCTGATCTAGGAAACAGAATTTCTAATGGAGATGTCACCTGGTGGTAAAAACAAAGGAGACAATTAAtttttttttcttttttctttttttttttttttCTGCTTCGCTGCCGGGAACACTCTTTGTAGAGTTTCATT---AAAACTCATTGAGCAGATATTTGATGGGTTCAAGTCCCCCATCTCCTTGGACAACTGGCAGGTTCACCACACCCCCAAGCATGGCATACAGTGAGTTACGGTGAGAGCAGGCACATGGGGGTCTCTACAGACAGGGGTCTGACAAAACCAGGATGGGCCCAGGATCCAGACCCAAATAT-GGAATTTCCCTGGG-CTGTCTCTTAGGGGATTTCCATGAGTGTCCCAAAGATCTGCCTCCCAAA--AATCTAG s canFam1.chr6 76037077 519 - 79106041 GGAAGAGGGGACAGAAAATGAGGGACATGCCCTTCCTGGGCAGAAGCAAGGTGCCATGTGTTGAAAGCCTGGTACATCTTTCATGCTCATACCCCAGGTCGTAGCAGG-------ATAAGACGAGTGCT-AGGGAT-GAAGTTCAGCTACCTATATGGTATTCATGAGCGCTTGAGTT-TCATCTGGCTTCCTCCTT-GCTGAATGTCTTTTCAGCTGCCCCCTTG-GCCTGAACTGGAGAACACAATTTCTAATGGGGGTGTCCCCTTGTGGTGATGTCCAGGGAAGGCCTTAATGTCTCTT---------------------------------------GGCCTGTATTTGCAGAGCTGCACCCAGGAGA-TCTTTGAGGAGCTAGTCTGCAGCTTCAACTACTCTGGATCCCTAGACAAGTGTCAGGTGCACCAGGTCCCTGC-------------TGCTCTGAGGTGAGAAGGGA---AGAGGGTTCTCCACA----------------------------CCTAGGGCTCCCATGCAAATATGGGGACAAAGCTGGGTCCCCCCCATAGTATTTTTACAAGAGTGCTCCACAGG-------CCCAAAGTAATCTGA a score=8206.0 s hg17.chr7_random 287887 47 + 778964 -CCTTAACTAGTCCCAAAGGCAGCTTGGTTAAGTGTAAAGTCCCTTTT s panTro1.chrUn_random 177454081 47 - 240967748 -CCTTAACTAGTCCCAAAGGCAACTTGGTTAAGTGTAAAGTCCCTTTT s mm5.chr12 75469939 47 + 115071072 -CCTCAACAGGTCCCAAAGGCAGCCTGGGTAAGAGCAGAGTCTCTTTT s canFam1.chr6 76037596 40 - 79106041 ATCTCCACATCTCT-----GCCACC-AGCTATGTGAAGATACCTTT-- a score=44848.0 s hg17.chr7_random 287934 365 + 778964 TACATTCTTGTAGAAATATCAGAGAAGGCCTT---TGTGTTG------------------------TTTTTACTTTACACTAGGC----TGTATTTATTCATGTTACTACAGTTTGTATGGTTTTAATTTTTCCCCCCTGGTATCACCTGTAGCAGGCAGCTTCATGGCACTGCCAGACCTTCCCCAAGACTTCA-AAGCCACCACTATCACTAATACTCTAGA-------AAAATAGGGAAGAGTTTACATGAAAAGGGGGTTATATTGTTCCCTGCATTTGTCTGCAACGTGTCATCTCAGAGAACACATCCCTCTA------GCCCATCAGGGCAGAAGTGGTGCCCTCACATCTCTTTGTAATGTTCTATAATGGGGGTCA-CTTCCCAGAGTGGTTTAGCCTTTCA s panTro1.chrUn_random 177454128 365 - 240967748 TACATTCTTGTAGAAATATCAGAGAAGGCCTT---TGTGTTG------------------------TTTTTATTTTATACTAGGC----TGTATTTATTCATGTTACTACAGTTTGTATGGTTTTAATTATTCCCCCCTAGTATCACCTGTAGCAGGCAGCTTCACGGCACTGCCAGACCTTCTCCAAGACTTGA-AAGCCACCACTATCACTAATACTCTAGA-------AAAATAGGGAAGAGTTTACATGAAAAGGGGATTATATTCGTCCCTGCATTTGTCTGCAATGTGTCATCTCAGAGAACACATCCCTCTA------GCCCATCAGGGCAGAAGTGGTGCCCTCACATATCTTTGTAACGTTCTATAATGGGGGTCA-CTTCCCAGAGTGGTTTAGCCTTTCA s canFam1.chr6 76037636 387 - 79106041 CACATTA-TGTTGGAATGGTAAAGAACATATTTAATGTTTTGGGGAGATTTTTTGGTCTGTTTTACTTTTTACTTTTCACAAGGCCAAGTGTATCTTTGCACTTTACTAC----TGTTTTATTTCACCTACTCGCCCCAGATACC-TGTGTAGAACTCAGCTCCATTGTCCTTGCAGAACTTCTCCAAGCCCTTACAAACCATCA----CACTAAAA----AGAGTGATTTAACACAAGAGAAAGTGT----------GGGACGAAGCCATTCTATATTTTTCTCTGCAACATGTCATCTCTCAGAATACATCAAATCATTGTAGGACCAACAAGTCACAATCTCTGTCCCTATATGTCTTCATAATATTCCAGAAAGGAGGTCATCTGCCTACTGTAATTTAGCATTTCA a score=73332.0 s hg17.chr7_random 288299 871 + 778964 GTGACtattatttctgatcaaaatggaataaaactagaaatgaataacagatgaaaacaaaaatagcaacatatatatggaaattaaacaactcacttttgagcATGCTcatgtttaagggttgtaagacttgatattatgaagaatgctcatgatgcctaaagc-gagttacagattcaat-gcaat-cccttttaaattagcaatgtttttgaaatagaagaaggaaccaacaaa-ttatatggaatgtcaagcgaccataaagagcccaaaaatgttt-taaaaaaaaacaatgttagcggcctcaacttttctgatttcaaagcacattacaaagcaacagcaatgaaaacagtttgtttctagcataaagacagacaatttttccaataaaacagaaggtagcacacatgtaaacctcacacatATGAGcaaatagctatttgcataccaatattcattgcagcattattcacaaaggccaataggtgaaagcaacacaaactttcctcatagaatgaataaataaatataatttgtaatacaaaagtaatggaatattactcagcttttaaaggcagaaaatcttgtaccatccacaataaagagaaatcttgagaacatgatgctaagtaaaattagtcacaataaaacagatactctatgattctacttatatgtaatatctaaagtattgaaacttagaaacagaaaatagaatgatttttatcaggagccaggttgtaaggaaaatgggtagttgtcatttcatgtgtcctgagtttcagttttgcaaaagaaaaaagttttacaaatatgttgcaaagcaatgtaaatacattaacatgactgaactgtataagaaaaaatatta s panTro1.chrUn_random 177454493 865 - 240967748 GTGACtattatttctgatcaaaatggaataaaactagaaatgaataacagaacaaaacaaaaatagcaacatatatatggaaattaaacaactcacttttgagcATGCTcatgtttaagggttgtaagacttgatattatgaagaatgctcatgatgccttaagcggagttacagattcaatggcaatccccttttaaattagcaatttttttgaaatagaaaaaggaaccaacaaatttatatggaatgtcaagcgaccataaagagcccaaaaatgtttaaaaaaaaaaacaatgttagtggcctcaacttttctgatttcaaagcacattacaaagcaacagcaatgaaaacagtttgtttctagcataaagacagacaatttttccaataaaacagaaggtagcacagacgtaaacgtcgcacatATGAGcaaatagttatttgcacacccatattcatt---gcactattcacaaaggccaataggtgaaagcaacacaaactttcctcatagaatgaataaataaatataatttgtaatataaaagtaatggaa--------agcttttaaaggcagacaatcttgtaccaaccataataaagagaaattttgagaacatgatgctaagtaaaattagtcacaataaaacagatactctatgattctacttatatgtaatatctaaagtattgaaacttagaaacagaaaatagaatgatttttatcaggagccaggtggtaaggaaaatgggtagttgtcatttcatgtgtactgagtttcagttttgcaaaagaaaaaagttttacaaatatgttgcaaagcaatgtaaatacattaacatgactgaactgtataagaaagaatatta a score=11846.0 s hg17.chr7_random 289170 62 + 778964 aagattctaaattttatgttatgtatttttaccacaatcgaaaTTAAAA-ATGACACCCAAGg s panTro1.chrUn_random 177455358 62 - 240967748 aagattctaaattttatgttatgtatttttaccacaatcgaaaTTAAAA-ATGACACCCAAGG s canFam1.chr5 26672535 63 - 92064832 aagatgataaattttatgtcatgtgttttgaccacagttaagaaTAAAATATAACAATTAAAG a score=2865.0 s hg17.chr7_random 289232 30 + 778964 gccaagagagatggctcatgcctgtaatct s panTro1.chrUn_random 177455420 30 - 240967748 GCCAAGAGAGATGGCTCATGCCTGTAATCT a score=22055.0 s hg17.chr7_random 289262 257 + 778964 cagcactctgggaggctgaggcatgcagattacttgaggccatgagttcaagaccagcctggccaacatggtgaaaccccagctctatgaaaaacacaaaaattaaccaggcgtggtagtgcacacttttaatgccagctactcaagaggcagcagctggagaattgctttaacctgggaggtggaggttgcagtgagccaagattgtgccactgcactttggcgacagggtgagagtctgtcaaaaaataaataaa s panTro1.chrUn_random 177513353 257 - 240967748 cagcactttgggaggctgaggcatgcaggttacttgaggccatgagttcaagaccagcctggccaacatggtgaaaccccagcttcatgaaaaatacaaaaattagccatgcgcggtggtgtacaactttaatgccagctactcaagaggcagcagctggagaattgctttaacctgggaggtggaggttgcagtgatccaagattgtgccactgcactttggtgacagggtgagagtctgtcaaaaaaaaaaaaaa a score=748.0 s hg17.chr7_random 289519 22 + 778964 TAAGTAAA----GACACCTGAAGAGA-- s panTro1.chrUn_random 177513610 26 - 240967748 aaaaaaaaaaaaGACACCTGAAGAGA-- s fr1.chrUn 323272708 23 + 349519338 TAAACAAT----AATACCT-AAAAGATA a score=13231.0 s hg17.chr7_random 289541 56 + 778964 GAGAGTTACAAAGTTTTTGAAAAATTATCTTCAAATCGCATAAGTCTTTCTTTCAC s panTro1.chrUn_random 177513636 56 - 240967748 CAGAGTTACAAAGTCTCTGAAAAATTATCTTCAAATCGCATAAATCTTTCTTTCAC s canFam1.chr5 26672605 56 - 92064832 TAGAGGTATAAGAGTTTGTAAAAATTACCTTCAATTCAAAAAAGTGTTTCTCTCAC s fr1.chrUn 323272731 52 + 349519338 CATAGTTATGATAGTTTT---AAATTATATTCAAAAC-CAAATGTGTTTCTCCCAT a score=21312.0 s hg17.chr7_random 289597 115 + 778964 ACTAGGATAATATAAAC---------AATA-GATGTTGAAATTAAGACAATTTCCATGATTACTCACTTAGACAGAAT----CAATTATTGTC--CATCAAAC-----AAGAAGAAAATAACACAAGTCATAAACA s panTro1.chrUn_random 235757551 114 - 240967748 ACTAAAATAATATAAAC---------AATA-GATGTTGAAATTCAGACAATTTCCATGATTACTCACTTAGACAGAAT----CAATTATTGGC--CATCAAAC-----AAGAAGAAAATA-TACAAATCATAAACA s canFam1.chr5 26672661 133 - 92064832 AC--AGAAAATATAAATTTATCAATAAATA-GATGATGAAATTAATTCTATTTTTATGACAACTCACCTAGACAGGATAACACAATCATTGATAACATTAACCAGCAAAAGAAACGAACAAGGTAAGTCATGAACA s fr1.chrUn 323272783 128 + 349519338 GCAAAAATCACATATATTCACAAATTAATAGGATGTTGAAATTACAAGAATTT-CATGACTTCTCATCTACACAGGATTAAAAAACTATTCAC--AACAAACCTTCACAA----CAAATA-TACAAGTTATAAAAA a score=26778.0 s hg17.chr7_random 289712 132 + 778964 -AAATAGGGGCAATATTTATACAAGCAAA------CAAACAATTAAATCATTATATTAACAAAAGACCATAGGGATGGTTCATATTT----TTTGCCTCACACTGTCTTAAGCTGTACAGATTTGAATATTGTCATAGAAAAT s panTro1.chrUn_random 177513692 138 - 240967748 -AAATAGGGGCAATATTTAAACAA---AATAGGGGCAAACAGTTAAATCATTATATTAACAAAAGAC-ATAGGGATGGTTCATATTTGACTTTTGCCCCACACTGTCTTAAGGCATACAGAGTTGAATATTGTTATACaatat s canFam1.chr5 26672794 135 - 92064832 -AAGCATGGGTAACatttatttatataga------taaatatatatataaCTTTACTGAAAATAGAC-ATACGGCTGATTCATACTTGAATTAAACCCCATTTTGTCTTAAAATGCATTGAGTTGGAAAATGTCATAAAAAAA s fr1.chrUn 323272911 128 + 349519338 AAAACAAGGATAACATTTTTCCAGGCAAA------TAG------AGATAATTCTATTGG-AAAAGAC-ATATGGCTAATTCATATATGAT-TTTGCTCCACAATGTCTTAAATTGTACAAAGTTAAATATTGGCATGCACAAT a score=8476.0 s hg17.chr7_random 289844 63 + 778964 TATATTATATAAATTCAAA---CTAAAAACAATAAACTGATGTAAGGTGCCCTACCCTAAAACACG s panTro1.chrUn_random 177513830 63 - 240967748 tatattatataaattaaaa---cttaaaacaataaactaatataaGGTGCCCTACCCTAAAACATG s fr1.chrUn 323273039 64 + 349519338 --TAGAATATATACTAAAAAATCAAAACACAATTAACAGATGTGTTGTGACATACCCTCAAATACa a score=5512.0 s hg17.chr7_random 289907 80 + 778964 AAACACAGAAATGCAAAATT-GCAAAACAAACTTAAAAGAAACCTT---CCCCGAATTCTTACTTGAATAATGTAATTCAAAAT s panTro1.chrUn_random 177513893 84 - 240967748 AAACACAGAAATGTAAAATTTGCAAAACAAAGTTAAAAGAAACATTAACCCCCAAATTCTTATTTGAATAATGAAATTCAAAAT a score=90185.0 s hg17.chr7_random 289987 755 + 778964 CATAATAAATAGGTAGAAAGTAAAAACACAATTAACTGCTGTGAGACAGCCTACTCTAAA-----AAATACAGAAACATAAA-TTCTAAAACATAATTAAGAGAAACTTTGATCTATAAAATCCTGAAT-AAACATA---GTGTCCAACTGAAAAAGAATCCTAGGTAACTACAATTTTCAACTCTTCCTTTGAATCCATAAAAAGTATAAATTTTGAATTATTTGGATACAATTA--GGGCAACAACATTTCAAAGAAACCATATTATAATTATTAAAAAGAGATGTGATGAGAAAGTTTTAAGGAATAAAAATTTAAGTAATACTAGAGAAAGTTTTAAATTATGCTACTGAT---GCATTGCTTCTTTCCTTACACAAAAGGGTAAGGCTGTAATCTAGCCTTTAATAG---------------------------------------------------------------------------------------------AAAGGTCTTACATTTTTACATATGGTAACAATATAAATATTGT-AAATACAGTATAAAACATTGACAGATAAAATAAAAACTGGAAATAAATTGTACTATTAGTCAAATAAAAGTTGGGAAAA-CTGGAAGAAAATGCTAATAGTAATATTGTGCCTAGAGTCAA-TTAAACATACAAGCCaaatattttaataatt----aattatataattGATAC---------------ATAACATATACATTTGAGCATGCTGTTTTACAACTTCTCAAACTGAAATTACAGAAAAATGTGACACATGATCATTCAGAAAGTGAAAACACAGTCATAGTAATCTTCATATTAAAGAAAACAGAATCATAAAATAATAAGTGAGAA s panTro1.chrUn_random 177513977 760 - 240967748 CATAATAAATAGGTAGAAAGTAAAAACACAATTAACTGATGTGAGACAGCCTACTCTAAA-----AAATACAGAAACATAAAATTATAAAACATAATTAAGAGAAACTTTAATCCATAAAATCCTGAAT-AAACATA---GTGTCCAAATGAAAAAGAATCCTAGGTAACTACAATTTTTAACTCTTCCTATGAATCCATGAAAAGTATAAATTTTGAATTATTTGGATACAGTTA--GGGCAACAACATTTCAGAGAAAACACATTATAATTATTACAAAGAGCTGTGATGAGAAAGTTTTAAGGAATAAGCATTTAAGTAATACTAGAGAAAGTTTTAAATTATGCTAATGAT---GCATTGCTGCTTTTCTTACACAAAACGGTAAGGCTGTAATCTAGCTTTTAAGTG---------------------------------------------------------------------------------------------AAAAGTCTTACATTTCTAAATATGGTAACAATATAAATATTGT-AAATACAGTATAAAATATTGACATATAAAATAAAAATTGGAAACAAATTGTATTATTAGTCAAATAAAAGTTGGGAAAAACTGGAAGAAGATGCTAATAGTAACATTGTGCCTAGAGTCAA-TTAAACATACAAGCCaaatattttaataaattataaattatataatttataC---------------ATAATGTATACATTTGAGCATGCTATTTTACAACTTCTGAAAG-GAAATTACAGACAAATGTGACACATGATAACTCAGAAAGTGAAAACACAGTCATAGTAATCTTCATATTAAAGAAGACAGAATCATAAAATACTAAGTGAGAA s canFam1.chr5 26672929 843 - 92064832 CATAGTACATAGGTAAAAGACAAAACCACAATTAACCAATGTTGTGGAAGCTACTATTAAAAGACAAGTATATTGTTATGGAATTGCAAAACAAGAATAAGGGAAAATTTAACCCCCAAAATTCTAAATAAAACACAGATGTATCAAGTATCAAAGAGATCCTATAAAACTACTATTTTAAATTATGACTGTGTGCCCATGAAAAGCAAGTGTTTTGAA-TATTGGCATGTGTTTATGTGGCAGTAAAACTGGGCAGAAAATTCATTACACTCAATCATAAAAGCTCTAATGAAG----TTTAATGAATAAGCATTTAAATTACATTAGAGAAATTC----ATTATGTTATTAATATAATATTGCTCCTACTCTTACACAGAATGTAAAGACTGTAATCCATCCCTTAGATGCAAAAAATaaaaaagagaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaCTAAACAAACAAAAAAACCTCTTCATTCTGAATAAAGGAATACCATGAAAGTTGTAAAATATGCTGAGAATCGCTGATACATA----AACATTTGAGATTAAGTTACACCACGGTTCAGATACATTTCGAAGAAA-GTGGATGATAATTCCAATAATTACTTTTTGTCTGAAGTAAACCTATATTTATGAACCAAACATTTTAATAAAT-ATGAAGTGCCTACTAAGTACCCTGGCTCACTTATAAAAATGTGTACATTCCAGCACATTCTATCAGAACTTTTGGATCTAAAATCATAGACGAATTTCACATAAGTTCAATCAGAAAGTGaaaac-----------------------aaaaaaaaaaaaa----aaaaaagaaaGTGAAAA a score=15769.0 s hg17.chr7_random 290742 161 + 778964 ATAAGGTAATAATTGTGAATTCAATATATGTTGAA---CAATATTCTAA--------TTTCCCTTACGGAAAAAGTTT-TTGTAAGAAATCTGTAAAATGAGTACTTACAATAAACCATCCTACAGTAGAGGCTGTTG-GCATACAGTGTTTAAATTTCTATGATTAGGTCCTA s panTro1.chrUn_random 177514737 162 - 240967748 ATAAAGTAATAATTGTGAATTCAACATATGTTGAA---CAATATTCTAA--------TTTCCCTTACGGAAAAAGTTTCTTGTGAGAAATCAGTAAAATGAGTACATACAATAAACCATCCTACAGTAGAGACTGTTG-GCATATAGAGTTTACATTTCTATGATTAGGTCCTA s canFam1.chr12 34540654 159 - 75455811 AT-TGGTAGCAATTGACTATT----ATATGATAAAAGTCTAAGTTCTAAATGTTCTTGTTCTCTTATGGCATTACTTT-ATGTAGGAATTC--TAGGATGTA-------AACAAATTATTTTACTACTGAGAAATTGGAGCACATAGAGTTGACATTTTTAGTGTTAGTTCATG a score=15349.0 s hg17.chr7_random 290903 142 + 778964 CTAAAGAAAAGaaaattttaaaataaaataattaGATTTTCCTATTTAATAAGATAATTTTTGCCT--ATAAAGTTTTTCAGTCTAATTTTTTTGTAGAATTAGGTTTT-AGCCTTCATAAAACTTGACATTATGAAGCAGAAAA s panTro1.chrUn_random 177514899 142 - 240967748 CTAAGAAAAAGGaaattttaaaataaaataattaGATTTTCCTATTTAATAAGATAATTTTTGCCT--ATAAAGTTTTTCAGTCTAATTTTCTTTTAGAATTAGGTTTT-AGCCATCGTAAAACTTGACATTATGAAGCAGAAAA s canFam1.chr5 26673832 138 - 92064832 TTAAAAAAAATAAGGT-----GATGAGGCACTTGGGTGGCTCATTTTAGGGAGATGTTCTGTACTCTGATGAAATCGTGGACTCTGAATT--TTGCACAGTGATGTCTGAAGCCCCCATTAGATTGGAGATAATAAAACAGAAAA a score=38547.0 s hg17.chr7_random 291045 172 + 778964 CAGGTGTCAT-CTGTCTCTGTTGTTCCTGGAATTTCTAACCCAAATGCCAATTCCTCCACAACTCCCCTCACACACTTCTGAATTGAAGCA-CAACAGATTTATTAAAAATGGC---ATAACA-GCGGTGTCCAGAAATGTGCAGAGATTTTCCCAGATCCCCA---AAAGCAA----TGACAAA s panTro1.chrUn_random 177515041 174 - 240967748 CAGGTGTCATGCTGTCTCTGGTGTTCCTGGAATTTCTAACCCAAATGCCAATTCCTCCACAACTCCCCTCACACACTTCTGAATTGAAGCAGCAACAGATTTATTAAAAATGGC---ATAACA-GCGGTCTCCAAAAATGTGCAGAGATTTTCCCAGATCCCCA---AAAGCAA----TGACAAA s canFam1.chr5 26673970 173 - 92064832 CATGTGGCAT-CTGTCTCCAGTGTTCCTGAGATTTCTGAACCAAATCTCAGTATTGTCACA---CCCCTCAGAGACTTCAGACATGAAGCCAAACCAGAATT----TAAATGGCTTTAACACA-GAGGTCCTCAGCAATGGGCACAGATTCTTCCAGATGCCCA---GAAGGAAGTGGTGGGAAA s fr1.chrUn 307421890 173 + 349519338 CAAGTAACAT-CTGTCATTGATGTTCCTGAGATTTCTGAAACAAATCTTAATGTCACCACT---GCTCTCACACACTTCAGATATGATGGAAAAAGAAAACT-TCAGAAATGAT---CTAACATGCACTTCCTCAAAATACTCAGAGATATTCTTATATCCCCCCTTGAAGCAA----TGGAAGA a score=2668.0 s hg17.chr7_random 291217 18 + 778964 CTATTcagatcatttagg s panTro1.chrUn_random 177515215 18 - 240967748 CTATTcagatcatttagg s canFam1.chr5 26674143 18 - 92064832 ACATTCAGTTCCCGCAGG a score=7382.0 s hg17.chr7_random 291235 109 + 778964 ttctcacaagattctgggaggacttcggctttcagtgtgaatgcactggaagattctaagagagaggGAGAGAGAGAGAAtgtgtgtgtgtgcttgtgtgtgtgtgtgt s panTro1.chrUn_random 177515233 92 - 240967748 ttctcacaagatactgggaggactttggctttcagtgtgaatgcactggaagattctaagagagaggGGGAGAGAGAGAATGTGTGTGTGTG----------------- a score=11233.0 s hg17.chr7_random 291344 85 + 778964 gtgtgtgtgtTGAAATCAGAACTCCACCTTATGTGTTTATTGTGGAATTTGGAAATGAAAGCCTAAAGC-CCAAAATTAAAATCAC s panTro1.chrUn_random 177515325 73 - 240967748 ------------AAATCAGAACCCCACCTTATGTGTTTATTGTGGAAATTGAAAATGAAAGCCTAAAGT-TGAAAATTAAAATAAC s canFam1.chr9 14289290 86 - 53642819 GTGTGTGTGTTGAATCCAGAACTCTGGCTTCTGTGCTCAGGATGGAATTTGTAAGTGGAGGCCTGAAATGTGAAAATCGGGTTCAC a score=0.0 s hg17.chr7_random 291429 1 + 778964 A a score=91.0 s hg17.chr7_random 291429 1 + 778964 A s panTro1.chrUn_random 177515398 1 - 240967748 A a score=1326.0 s hg17.chr7_random 291430 3 + 778964 CAT s panTro1.chrUn_random 177515399 3 - 240967748 CAT s rn3.chr10 61954189 3 + 110733352 CAT s canFam1.chr9 14289376 3 - 53642819 CGT a score=4983.0 s hg17.chr7_random 291433 18 + 778964 AATAGCA-CGTTGCAAACT s panTro1.chrUn_random 177515402 18 - 240967748 GATAGCA-CATTGCAAAGT s rn3.chr10 61954192 18 + 110733352 GAAAGCA-CTCTGCAAATC s canFam1.chr9 14289379 19 - 53642819 GGTAGCACCATGGCACACT s danRer1.chr15 18348879 18 + 23217395 AATTGTA-CTTTACTAACT a score=233.0 s hg17.chr7_random 291451 2 + 778964 GT s panTro1.chrUn_random 177515420 2 - 240967748 AT s rn3.chr10 61954210 2 + 110733352 TT s danRer1.chr15 18348897 2 + 23217395 GT a score=191.0 s hg17.chr7_random 291451 2 + 778964 GT s danRer1.chr15 18348897 2 + 23217395 GT a score=2863.0 s hg17.chr7_random 291453 45 + 778964 --TTTCTGTGCTAGAT--------GGGTCGTTCTAG---GGTGTAGGACCCTGGTAAC s panTro1.chrUn_random 177515422 45 - 240967748 --TTTCTGTGCTAGAT--------GGGTCGTTCTAG---GGTGTAGGACCCTGGAAAC s mm5.chr11 74271679 41 + 121648857 --TCTCATTGCAAGCC--------AGGTTATTCCA-------ACAGGGCTATAGTAAT s rn3.chr10 61954212 37 + 110733352 ------GTTGCAAGTC--------AGGTTATTCTA-------ATAGGGTTATAATAAT s canFam1.chr9 14289398 47 - 53642819 --TGTCCATGCTAGAT--------AGGTTGTTGCAGCA-GGGAGTGGGCCCTGCTAAC s danRer1.chr15 18348899 56 + 23217395 TTTAAAAATGTGAACTTTCGCTTGAGTACATTTTAGTGTTATCTAGGGCTAT--TAAT a score=180137.0 s hg17.chr7_random 291498 177 + 778964 ACCGTTTTCCCCTCCTTCCGGAAAGAGCTACTCACACTGCTCAAAGCCTGCATCCACATGTACCATGTCAAAGACCAGCTCAAGAGCCTGGACCCATATGCCACCTTCAGCAGGGTTGACTGCAGCTCCTTGTTCTTCCTGAGCATCTTCTCCAATGGTGACCTGAGAGTTGCG--------GGA s panTro1.chrUn_random 177515467 177 - 240967748 ACCCTTTTCCACTCCTTCCGGAAAGAGCTACTCACACTGCTCAAAGCCTGCATTTACATGTACCATGTCGAAGACCAGCTCAAGAGCCTGGACCCATCTGTCACCTTCAGCAGGGTTGACTGCAGCTGCTTGTTCTTCCTGAGCATCTTCTCCAATGGTGACCTGAGAGTTGCG--------GGA s mm5.chr11 74271720 172 + 121648857 GC---TTTTCCTTCCT--CTGGCAGAGCCTTACACGGTGCGTGAGGCCCGAATCCATGTGCGTCATGTCAGAGACCTCCTCAAGAGCTTGGACCCATCTGATGCCTTCAATGGAGTTGACTGTAACTCCTTGTCCTTCCTGAGTGTCTTCACTGATGGTGACTTAGGAGGTGCG--------GGA s rn3.chr10 61954249 173 + 110733352 GC--TTTCACCCTCCT--CTGACAGAGCCTTACACAGTTCGGGAGGCCCGAATCCACGTGCGCCATGTCCGAGACCTCCTCAAGAGCTTGGACCCATCTGATGCCTTCAATGGAGTTGACTGTAACTCCTTGTCCTTCCTGAGTGTCTTCACTGATGGTGACTTAGGAGGTGCG--------GGG s canFam1.chr9 14289445 177 - 53642819 ACTCTGCCCCTCACCCTCCCGACAGAACCATACACAGTACGTGAGGCCCGCATCCACGTGCGCCACGTCCGAGACCTGCTCAAGAGCCTGGACCCATCTGATGCCTTCAACGGGGTTGATTGCAACTCTTTGTCCTTCTTGAGCGTCTTCACTGACGGCGACTTGGGAGGTGCG--------GGA s fr1.chrUn 264579314 183 - 349519338 ATCATCTTGTCTTCAT--TCTCTAGAACCCTACACAGTGCGTGAGGCTCGCATTCATGTGCGTCACATCAGAGATCTTCTGAAAAGTTTAGACCCTTCCGACGCCTACAATGGAGTGGACTGTAACTCACTGTCATTCCTCAGCATCTTCACCGATGGAGACCTTGGAGGTGCGTTACCCTCTGA s danRer1.chr15 18348955 173 + 23217395 --GCTGTTGTGCGTTT--CCTGTAGAGCCCTACACAGTGCGTGAAGCTCGCATTCATGTCCGTCACATCAGGGACCTGCTGAAGAGCCTGGATCCATCAGATGCTTATAATGGAGTAGACTGCAACTCCCTCTCCTTCCTCAGCGTCTTCTCAGAAGGAGATCTTGGAGGTCAG--------TGA a score=110480.0 s hg17.chr7_random 291675 295 + 778964 GGCATTGGGGCCAGGA-TTGAACAGAGGAAAAAGGAGCATGGAGGCCAGGTGCTGAGGACCAGGCCATCTTACCTGGAGAGTTCTGGCCCTGAGACATCCAGACCAACATGACGTTTAGGTGCAGACAGCTGGCCCTGGGTGGCCCTGTGCTGATCACC--GGCCTCGGCCCCTCAAACAGTGGGAAATGGAAGAA---TGGCTTGGAAATGGGTCCTGTCGACTGTGTGTCATCTGAGCACATTCTCCCAGGGGCCCAAGAAGGGCCATCGTGT---------CTCCAGAACCAGAACTGGAAGGT-AAA s panTro1.chrUn_random 177515644 296 - 240967748 GGCATTGGGGCCAGGA-TTGAACAGAGGAAAAAGGAGCATGGAGGCCAGGTGCTGAGGACCAGGCCATCTCACCAGGAGAGTTCTGGCCCTGAGACATCCAGACCAGCATGACATTTAGGTGCAGACACCTGGCCCTGGGTGGCGCTGTGCTGATCACC--GGCCTCGGCCCCTCAAACAGTGGGAAATGGAAGAA---TGGCTTGGAAATGGGCACTGTCGACAGTGTGTCACCTGAGTACATTCTCCCAGGGGCCCAAGAGGGGCCATCGTGT---------CTCTAGAACCAGAACTGGAAGGTGAAA s mm5.chr11 74271892 276 + 121648857 AAAATTGGCACTTGGACTTGTGCAGAGGGACAAAGGCCTGAAGGGCTGGGGGCTGGGGGTT--------------------TGCTGAAGTTAAGA----CAAGCCAGAGATACATTAAGTAACAGAAA--------TAGTTGGTTCCTGGCTGACCACCAAGCCTTGGGTTCCTCAGACAGTGGGAAGCGGAAGAA---AGGCTTGGAGATGGACCCCATCGACTGCACCCCACCTGAGTATATCCTGCCGGGGAGCCGGGAGCGGCCTCTCTGTCCCCTGCAGCCCCAGAACCGTGACTGGAAGGTAAGA s rn3.chr10 61954422 271 + 110733352 AAAATTGGCACTTGGACTTGTGCAGAGGGACAA---------AGGCTGGGGGTTGGGG---------------TGGGAGCTTGCTGAAGTCAAGG----CAAGCCAGGGACACATTAAGTAACAGAAA--------TGGTTGGTTCCTGGCTGACCACC-AGCCTTGGGTTCCTCAGACAGTGGGAAGCGGAAGAA---AGGCTTGGAGATGGATCCCATCGACTGCACACCACCTGAGTATATCCTGCCAGGGAGCCGGGAGCGGCCTCTGTGTCCCCTGCAGCCCCAGAACCGTGACTGGAAGGTAAGA s canFam1.chr9 14289622 289 - 53642819 GGCATTGGGACTGGAGCTTGGGCAGAGGGACCAGGGGCC---AGGGAAGGGGCCAGGGACAAGGCCTTCCCACCATGAGGGGGCAGGGCTGGAGTCATCCACACTGG-----CATTGGTTTGC----------CCCGGGGTGGCCCTGTGCTGACCACC-GGCCTCGGGTCCCTCAGACAGCGGGAAGCGGAAGAA---GGGCTTGGAGATGGACCCCATTGACTGCACACCACCTGAGTACATCCTCCCTGGGAGCCGGGAGCGGCCATTGTGTCCCCTGCAGCCCCAGAACCGTGACTGGAAGGTAGTA s fr1.chrUn 264579497 199 - 349519338 GATATT-----------TT------------------------------------------------------CTTGAGCAGTCTTTACATGTGA---------TGGGGATACA----------------------TATCTTCTCCTTGTTTGATGCTG---------------CAGATAGTGGCAAGCGTAAGAAAAGAGGCAACGAGCTTGAGCAGATTGACTGTACCCCTCCAGAGCACATTCTGCCCGGCAGCAAAGACCGCCCTCTGGTGCCTCTCCAGCCACAGAACAAGGACTGGAAGGTGAA- a score=2404.0 s hg17.chr7_random 291970 29 + 778964 CTGTCAGGG-GGGACAAGGAAGAGGGTCCT s panTro1.chrUn_random 177515940 29 - 240967748 CTGCCAGGG-GGAACAAGGAAGAGTGTCCT s mm5.chr11 74272168 27 + 121648857 CT-TTAGAA-GCATCAAGGAAGTAAGACC- s rn3.chr10 61954693 23 + 110733352 CT-TTAGAA-GCATCAAGGAAGA----CC- s canFam1.chr9 14289911 28 - 53642819 CT-CCGGAGCAGAGCCAGGGGGCAGGTCT- a score=162408.0 s hg17.chr7_random 291999 226 + 778964 CAG----TTGGGT-----GGAGGGTCTCACA-GCAAGACGCCTGGCTTA--ATCAAGCTTGGCCAT--------TCC--TGAAGCACGTTCAGTGACTAAAAGTGCCTACCATGAGCAGCTGGAACCCACTCCCTGAGAGCTGCAAGATCCATGGGGACCTCATGTACCTGTTTGTAATTACAGCCAAGGACCAGCAGG-CAGCATTACCGCATCCACATGGGGCTTTTGCTGGACACAGTAAGTCTC--T s panTro1.chrUn_random 177515969 228 - 240967748 CAG----TTGGGT-----GGAGGGTCTCACAAGCAAGACGCCTGGCTTA--ATCAAGCTTGGCCAT--------TCCCCTGAAGCACGTTCAGTGACTAAAAGTGCCTACCATGAGCAGCTGGAACCCACTCCCTGAGAGCTGCAAGATGCATGGGGACCTCAAGTACCTGTTTGTAATTACAGCCAAGGACCAGCAAG-CAGCATTACTGCATCCACATGGG-CTTTTGCTGGAACCAGTAAGTCTC--T s mm5.chr11 74272195 218 + 121648857 -------CTGGTG-----GGAGGATCCCAAA-------AGTCCTGTCTC--CTCATGTTTGGCCAT--------TTG--TGCAGCCCCTGCAGTGTCTGAAAGTACTTACCATGAGTGGCTGGAACCCACCTCCTGGGAACCGCAAGATGCATGGGGACCTCATGTACCTGTTTGTGATCACTGCTGAGGACCGGCAAGTCAGCATCACTGCATCGACGAGGGGCTTCTACCTGAATCAGTAAGTCTT--T s rn3.chr10 61954716 218 + 110733352 -------CTGGTG-----GGAAGATCCCAAA-------AGTCCTGTCTC--CTCATGTTTGGCCAT--------TTG--TGCAGCCCCTGCAGTGTCTGAAAGTGCTCACCATGAGTGGCTGGAACCCCCCTCCTGGGAACCGCAAGATGCATGGGGACCTCATGTACCTGTTTGTGATCACTGCTGAGGACCGGCAAGTGAGCGTCACTGCGTCCACACGGGGCTTCTACTTGAATCAGTAAGTCTC--T s canFam1.chr9 14289939 233 - 53642819 -------CTGGCGGGGCAGGGGGCTCCCCCA-CCTAGAGGCCCGGCCCCCACTCACACTTGGCTAT--------TCC--TGCAGCCCCTGCAGTGCCTGAAAGTGCTCACCATGAGCGGCTGGAACCCACCCCCCGGGAACCGTAAGATGCATGGGGATCTCATGTACCTGTTTGTGATCACAGCTGAGGACCGGCAAGTCAGCATCACGGCATCCACGCGGGGCTTTTATCTGAACCAGTAAGTCCCTGT s fr1.chrUn 264579741 238 - 349519338 CAGTGGATTCATG-----GGTATCTTTTGCA-GAAATAAATTAAAATT---CTAAATCTTGTTCATCTAACTCCTCC--AGCAGCCTATGCAATGCCTGAAGGTCTTGACTATGAGCGGCTGGAACCCTCCCCCTGGAAACAGGAAGATGCATGGTGACCTCATGTACTTGTACATTGTGACTGTGGAGGAGCGTCATGTCAGCGTCACTGCCTCTACACGTGGCTTCTACCTCAACCAGTCAGTATC--T a score=94271.0 s hg17.chr7_random 292225 425 + 778964 GCCAGCCCCTCCCAGGCTCCTGGGATG-CCACTTGTTCTGGATCTGTGGACAGATAACCAGGATACTTGCTCAGTGTCCA-TCCACTCCTTGT-GGTCTGAAGCCTATCGC-TCAACCCTAGCCCCACCAGACC-TGCTTCCTAAGGCATTCC-------------------------------TCATGC--------------------------------------CAGAAGGAAAGGCAATGACTTTGTCCCACAGCCCCTGCCTTGTGTCATGTCATGTGGGGGTATGGAATGAATCGG-CAGCCGAAACTCCTGTCCTTCTGCCTGAGAATTCTAT---------CTTCTCTGTCT--GAGTTACCCT----CTAGGGAGCTGTCAGTGGGAGAGAGAGCAGCTGTGGAAGAGAGTCCCACCTGCTTCTGTTTGACT-TCAGGGCAGCCTCTCAGGGCA--AGAACCCAGAGCAGGTGGAGGCCTCAAAGAAG-----CCTGTGGCAGGGCTCTGGGC s panTro1.chrUn_random 177516197 406 - 240967748 GCCAGCCCCTCCCAGGCTCCTGGGATG-CCACTTGTTCTGGGTCTGTGGACAGATAACCAGGACACTTACTCAGTG------------------------AAGCCCATCGC-TCAACCCCAGCCCCACCATACCCTGTTTCCTAAGCCATTCCC------------------------------TCATCC--------------------------------------CAGAAGGAAAGGCAATGCCTTTGTCACACAGCCCCTGCCTTGTGTCATGTCATGTGGGGGTATGGAATTAACCGGTCAGCCTAAACTCCAGTCCTTCTGCCTGAGGAATCTGT---------CCCCGCTGTCT--GAGTCGCCCT----CTAGGGAGCTGTCAGTGGGACAGAGAGCAGCCCTGGAAGAGAGGCCCACCTTCTTCTGTTTGACT-TCAGGACAGCCTTTCCGGGCA--AGAACCCAGAGCAGGTGGAGGCCTCAGAGAAG-----CCTGTGGCAGGGCTCTGGGC s mm5.chr11 74272413 451 + 121648857 CCTAGTCTTCCACGTGC-CATGGCGTGTCCCCGTGTTCTGAGTCTAATGACAAATACTTACGGCACCTGCTTTGTG---A-CCCTCTCCTTACAGGTCCACGGCCTACCACTTCAACCCCAAGCCTGCCAGCCCCCGCTTCCTCAGCCATTCCCTAGTAGAGCTGCTC----AAC-----CAGATCAGCCCAACCTT---------CAAAAAGAACTTTGCTGTGCTGCAGAAGAAAAGGTAGCGCCTCTGCCAC-CATGCCCTGCCCTGCCTCCAGTCACA-------------------GGCTGGACCCCACAGCAGCACCTCTGCCTGAAGAAATGGTG--------TCCCAGTGCCT--GAGAGTCCCTAGTCCAAGGGGGC----------------AACAGCCTTGGGAGAGGTGCCCATTTGC-TCTATTTGACT-TCTGGTTGGCATCCATGGGTAGGAGATGCCAGAACA-GTGAGGGCCTCAGAGAAGAGACACTCACAACTAGGCTCTAAGC s rn3.chr10 61954934 435 + 110733352 GCTCGTCCTCCACGTGC-CCTGGCGTGTCCCCGTGTTCTGAGTCTAATGATAGATACTTAGGGCACCTGCTTAGTG---ACCCCTCTCCTTGCAGGTCCACAGCCTACCACTTCAACCCCAAGCCTGCCAGCCCCCGCTTCCTTAGCCATTCTCTAGTAGAGCT----GCTCAAC-----CAGATCAGCCCAACCTTCAAAAAGAAC---------TTTGCTGTGCTGCAGAAGAAAAGGTAGCACCTTTGCCAC-CGTGCCCTGCCCTGCCTCCAGTCACA-------------------GGCTGGACCCCACACCAGCATCTCTGCCTGAAGAAATGGTG--------TCCCTGTGCCT--GAGAATACCTGGTTCAAGGGGGC----------------AACAGCCCTGGGAGAGATGCCC-------------------TTTGGTTGGCATCTATGGGTAGGAGATGCCAGAACA-GTGAGGGCCTCAGAGAAGAGGAGGTCACACCTGGGCACTAAAC s canFam1.chr9 14290172 444 - 53642819 GTGAGCCCATTTCAGGTCTTTAGGCCG-CTACTTG-------------------------GGTGCCCTGTGCCGTGACCA-CCCTCTCCCCTCAGGTCCACAGCGTATCACTTCAATCCCAAGCCTGCCAGCCCTCGCTTCCTTAGCCATTCCCTGGTGGAGCT---------GCTCAACCAGATCAGCCCAACCTT---------CAAAAAAAACTTTGCTGTGCTACAGAAGAAAAGGTAGAGCCTTTGCAAC-ATCTCCACCCCTTGTCTCACGTCCCACAAGAGGGTGG-GTGAACATGCCAGCCTGAACTTCTTCACGTCTGCCCTAAGAAGCCATGCCTTCAGCCCCCAGCACCCCAGAGCCTCCCT----TTAG---------------------GGCAGTCCTAGAAGACGTGCCCATTTGCTTCTGCTCGCCTCTCCAG--GGTCTCGGTGGG-A--AGACATGAGAGCTGGTTGGTGCTTTAGGGCAGGGG--CCCAGGGCAGGGCTCTGAGC a score=151184.0 s hg17.chr7_random 292650 206 + 778964 TTGATGGGCTGAGCATC--TCCCTATCTGCTGCCTGCAATGGGGCCCAGAACCATCCATTCAAGAGGGTCACCACCATATTGCAGGTGTGCAGCTGGACGGTTCCCAAGGCAGAGGCTGCCATGGACTGCAAGCACACAGAGGATGT--ACACCTTGAGGGTGGACTATGAGGAGAATATTTTTGAAGAGGTGCATGCAGC--CTGGCCCTG s panTro1.chrUn_random 177516603 206 - 240967748 TTGGTGGAATAAGCATC--TCCCTCTCTGATGACTGCCATGGGGCCCACAACCAATCATTCAAGAGGGTCACCACCACACTGCAGGTGTGCAGCTGGACGGTTCCCCAGGCAAAGCCTGCCATGGACTGCATGCACACAGAGGATGC--ACACCTTGAAGTTGGACCATGAGGAGAACATTCCTGAAGAGGTGCATGCAGC--CTGGCCCTG s mm5.chr11 74272864 206 + 121648857 TTGGAGGGGTGTTCCACCTTTCCATTCCCCTGCCTGCCACAGGGTCCAGCGCCACCCATTCGAGAGGATCGCCACCCCGTTCCAGGTATACAGCTGGACAGCCCCCCAGGCAGAGCATGCCATGGACTGTGTGCGTGCGGAGGACGCCTACACCTCGAGGCTGGGCTACGAGGAGCACATTCCTGGACAGG----TGCTAC--CCAGACCCG s rn3.chr10 61955369 204 + 110733352 TTGGAGGGGTGTCCCACCTTCCCATTCCCCTGCCTGCCACAGGGTCCAGCGCCACCCGTTCGAGAGGATCGCCACCCCGTTCCAGGTATACAGCTGGACAGCCCCCCAGGCGGAGCATGCCATGGACTGTGTGCGTGCTGAGGACGCCTACACCTCAAGGCTGGGCTACGAGGAGCACATTCCTGGACAGG----TGCTAC--CCAGACC-- s canFam1.chr9 14290616 205 - 53642819 TTGGCAGTTTCTCCATC--TCCCCCTCTC---GCTGCCACAGGGTCCAGCGCCACCCATTCGAGAGGATTGCCACCCCGTTCCAGGTGTACAGCTGGACAGCCCCCCAGGCGGAGCATGCCATGGACTGTGTGCGTGCGGAGGATGCCTACACCTCGAGGCTGGGCTATGAGGAGCACATTCCTGGACAGGTGCCTGCAGC--CTGGCCCTG s fr1.chrUn 264580819 202 - 349519338 TTGATGGTATCAAAAAA--ACTCTAT--------TGTTGCAGAGTTCAGCGACACCCCTTTGAAAGGATAGCAACACCTTTCCAGGTGTACAGTTGGACAGCTCCACAGGTAGACCACGCCATGGACTGTGTTCGGGCCGAAGATGCCTACACCTCCCGTTTAGGCTACGAGGAACACATACCTGGACAGGTACCTGCTGCCGCTGAACCTG a score=8639.0 s hg17.chr7_random 292856 110 + 778964 CCTTCACTGGGAA------CCCCCTTCCTT-CTGGGTACTAGACAGAATTCTGTACACTTTCCTGG-AGGCTCCAT------TCTGGTCTGTTCATTT-GGAAGTTT--CAGGCTGTCTGTGAGGAA s panTro1.chrUn_random 177516809 112 - 240967748 CCCTCACTGGGAA------CCCCCTTCCAT-CTGGGTACTAGACAGAATTCTGTGCACTTTTCTGGGAGGCTCCAT------GCTGGTCTGTTGATTTTGGAAGTTT--GATGCTGTCCGTGAGGAA s mm5.chr11 74273070 71 + 121648857 CCCTTCCT---------------------------------GCCAGGCTCATATGCACCTCCCAGT-AGGCTCCC------------TCTGTTCTCTA-GG---------GGCCTATCCACAGGGAA s rn3.chr10 61955573 70 + 110733352 -------------------CGCCCTTCT-------------GCCAGGCT-CTATGCACCTCCCAAT-AGGCTCCC------------TCTGATCTCTA-GG----------GCCTATCCACAGGGAA s canFam1.chr9 14290821 125 - 53642819 CCCTCCCTGGCACCTCTCTCGCCCTCCCTTGCTGGGTGCCGGGCTGGGATCTGTGCGCCTCCCTGG-AAGCTTATCTATTTATCTGTCTTGTTTACTT-GGGAGCTTTGGAGGCTGTCCATAGGGAG a score=19755.0 s hg17.chr7_random 292966 38 + 778964 GT-AACAAAAGAGATGTCTCAAAGCAGGTTGTGGGG-CAC s panTro1.chrUn_random 177516921 38 - 240967748 GT-AACAAAAGAGATATCTCAGAGCAGGTTGTGGGG-CAC s mm5.chr11 74273141 39 + 121648857 GTGGAAGAAGGGGATAACCCAGAGCAGGTCAGCAGA-CAT s rn3.chr10 61955643 39 + 110733352 GTGGAAGAAGGGGATAGCCCAGAGCAGGTCAGGAGA-CAC s canFam1.chr9 14290946 39 - 53642819 GT-AGAGGGAGGGATGGCCCAGAGCAGGTCTTGGGGCCAT s danRer1.chrNA 65291142 38 + 390413307 GT-GACAAAAGAAATGCTTTAAAGTTTGTTTTGGAT-CAC a score=90257.0 s hg17.chr7_random 293004 137 + 778964 AGGCTGAGAGATTTTCTCCCTCCCTAGTCCCTCTGCAGGCACGGGGCTGGAAGAAGGACCTGTGGATAATGAGGGAACTGCTCTTCGAGAACCGGCCTGAGCAGCTGCTTCAAGAAAGAGCCACATTAAAGGTGCCT s panTro1.chrUn_random 177516959 137 - 240967748 AGGCTGAGCGATTTTCTCCCTCCCTAGTCCCTCTGCAGACATGGGGCTGGAACAAGGACCTGTGGATAATGAGGGAACTTCTCTTCGAGAACCTGCCTGAGCAGCTGCTTCAAGAAAGAGCCACATTAAAGGTGCCT s mm5.chr11 74273180 137 + 121648857 AGGCTGAGCCTGCCTCTGCCTCCCTGGTCCCTCCACAGACCCGGGACTGGAATGAAGAGCTGCAGACAACAAGGGAGCTGCCCCGCAAGAACCTGCCTGAGCGGTTGCTCCGAGAACGAGCCATATTCAAGGTGACT s rn3.chr10 61955682 137 + 110733352 AGGCTGAGCCTGCCTCTGCCTCCCTGGTCCCTCCACAGACCCGGGACTGGAATGAAGAGCTGCAGACAACAAGGGAGCTGCCCCGCAAGAACCTGCCTGAGCGATTGCTTCGAGAAAGAGCCATTTTCAAGGTGACT s canFam1.chr9 14290985 137 - 53642819 GGGCCAAGCTGGCATGCCCCTCCCTGGTCCCTTTGCAGACCCGGGACTGGAACGAGGAGCTGCAGACGACGAGGGAACTGCCCCGCAAGAACCTGCCTGAGAGGCTGCTTCGAGAAAGAGCTATATTCAAGGTGCCT a score=2313.0 s hg17.chr7_random 293141 6 + 778964 ATAGCC s panTro1.chrUn_random 177517096 6 - 240967748 ATAGCC s mm5.chr11 74273317 6 + 121648857 ACAGCC s canFam1.chr9 14291122 6 - 53642819 ATGGCT a score=563.0 s hg17.chr7_random 293141 21 + 778964 ATAGCCCCTGATGAGGGAATG s canFam1.chr9 14291122 21 - 53642819 ATGGCTCTTTATGCCTGACTG a score=1923.0 s hg17.chr7_random 293147 15 + 778964 CCTGATGAGGGAATG s panTro1.chrUn_random 177517102 15 - 240967748 CCTGATGAGGGAATG s canFam1.chr9 14291128 15 - 53642819 CTTTATGCCTGACTG a score=15534.0 s hg17.chr7_random 293162 203 + 778964 GCAGCCTCAGGCCCGCCTGCCATCTGTGAGCAGGTTTTCTTGCTAACAGGATGAAAGCAAAGAAAGCTGGAATGAGCCCAGCCCTCTCAGGCAGCTTGAAGGCTGTTGGGGTTCTTTCCAGGCCTTCTAGCCTTCTGCTTCTTGGCAGGCCACTCAGGCACCTTTTTCCAGCCT--CTGAGACTTCCATGCT---------CTGGAAGGAGAGG- s panTro1.chrUn_random 177517117 203 - 240967748 GCAGCCTCAGACCCGCCTGCCATCTGTGAGCAGGTTTTCTTGCTAACAGGATGAAAGCAAAGAAAGCTGGAATGAGCCCAGCCCTCTCAGGCACCTTGAAGACTGTTGGGGCTCCTTCCAGGCCTTCTAGCCTTATGCTTTTTGGCAGGCCACTCAGGCACCTTTTTCCAGCCT--CTGAGACTTCCATGCT---------CTGGAAGAAGAGG- s rn3.chr10 61955819 185 + 110733352 GCAGCCTTAAGCCTCCCTGTTA--------CTGGGCTTGTGGGTA--AAGAGAAAACCAGAG---GCTGGCACTAGCCTACCTTTGTTGGCAACACTGGAGAT------AGACTTTGCAGGGTATGTCAACCTCCTGCCTCTCAGAAAACCACCTCAGGTTTTTGCTATGGCTTCACTGAGA-TTCTTGGCT---------GTAGAGTGGGAAG- s canFam1.chr9 14291143 143 - 53642819 GTAGCCCCAGGCATGCTTGCCTCCTGCCAACA-------TTGCTG----------GCCACAG-----------------------------TACCCTGCGGGGCATCGG--------------------------CACCTCTGGGCACACTATCTCAGCTCTGTTTTGTGACTCCTCTGAGACTTGGAGTCCTGGGGCTAGGTGGAGGGTGGGGG a score=12027.0 s hg17.chr7_random 293365 84 + 778964 GTCCCACTTTTCACTAGGTTATGGGGCCGGGCCCATCCAGCTCCCCG-CTTCCACTAACAACCATGGGGCTCTCACCTGGGCACA s panTro1.chrUn_random 177517320 84 - 240967748 GTCCCACTTTTCACTAGGCTATGGGGCCAGGCCCATCCAACTCCCCG-CTGCCACTAACAACCATGGGGCTCTCACCTGGGCACA s canFam1.chr9 14291286 85 - 53642819 GACCTCCTCCATTGTGGACTGTGTGACAGGTTTCTTCCGGCTTCCCACCTACCACTGTCTGCCATTGGGACCTTGCCTGGGCACA a score=10758.0 s hg17.chr7_random 293449 147 + 778964 CACTGCCCAAACATGGCCCTTCTAAGGCAGAAGATCATGTGTCTTGCAGTTTCAGCTTGCTAGGGCTTAAAAGTTATCAGTGCTGTTATTAAGATAGGGAAATGAACGGGGAAAAGA-----TGCTTTAAAAAATTTCCCATAATCATACCA s panTro1.chrUn_random 177517404 146 - 240967748 CACTGCCCAAACATGGCCCTTCTAAGGCAGAAGATCATGTGTCTTACAGTTTCAGCTTGCTAGGGCTTAAAAGTTATCAGTGCTGTTATTAAGATAGGGAAGTGA-----GAAAGGAAAACTTGCTGTAAAAG-TTTCCCGTAATCTTACCA a score=35608.0 s hg17.chr7_random 293596 216 + 778964 CGGAGATCATCAGCACAGATGACAGCACAGGCGGGGCTGCTGGGGAG---GCTGAGGGAGAGTGTCC-AGCCTGTTCTGCCAGCTGACTCTT----GCCAGGGGTGCCTCTTGATACAGTCCCTTAGAGAAGCATGCAGACATCTCAGGAAGGACCTGGAAGGTGCAGATCAGGGCAACCCAGCACTACT-----GACGGTGGAGTGGGCCTACCTCCCATCAAGCTGT s panTro1.chrUn_random 177517550 217 - 240967748 CGGAGATCATCAGCACAGATGACAGCACAGGCAGGGCTGCTGGGGAG--AGCTGAAGGAGAGTGTCC-AGCCTGTTCTGCCAGCTGGTCCTT----GCCAGGGGTGTCTCATGACCCAGTCCCTTAGAGAAGCATGCAGATACCTCAGCAAGGACCTGGAAGGTGCAGATCAGGGCAACCCAGCACCACT-----GACGGTGGAGTGGGCCTACCTCCCATCAAGCTGT s mm5.chr11 74276131 197 + 121648857 CAGAGACCATCGCCTCAGATGATGGCACAGGTGGGGTTCCTT--------GCTTGTTTGGAGAGCCCAAGCTGGTCCTGGCAGCTTAGCCATGGGGGGTGGGGGTGG-TGGTGTCATGATCTCTGAGAGAGGCAGGCAGATATCCCTAGAGTGGGTTGGGTGA-GAGGCTCACGGT-GCACAGCTCTACC-----TACCAT-------CCTTGCCCGCC---------T s rn3.chr10 61959235 154 + 110733352 CAGAGACCATCGCCTCAGACGATGGCACAGGTGGGGCTGCTG--------------------TGCTT-GTTTGGTTGTGGCAGTTTAGCTCA-----------------------CAGATCTCT--GAGGGGCAGGCAGACATCCCTAGAGCGGGTGGGCAA--GAGGCTCATAGCAGCACAACTCTACC------------------TCCTATCCTCA---------C s canFam1.chr9 14293846 203 - 53642819 CAGAGACCATCGCCTCTGACGACGGGACAGGTGGGGCTGCTGTGGATGTGGGGAGGGCGGAGCTCCA-GTGCTGTCCCTGTAGCTGATGGCT-------------------TGACCTAG--CCTGAGGGAGGCCGGCAGGTGTCCCCAAATGGAGCTGGG----GAGGCTCAGGGTAGCGCAGCCCCACCCCCCTGATGGGGGAGGGGAGCTGCGTCCCAGCCGACCTT a score=4441.0 s hg17.chr7_random 293812 5 + 778964 GTCTC s panTro1.chrUn_random 177517767 5 - 240967748 GTCTC s mm5.chr11 74276328 5 + 121648857 GTCTC s rn3.chr10 61959389 5 + 110733352 ATCCC s canFam1.chr9 14294049 5 - 53642819 GTCTC s danRer1.chrNA 65294018 5 + 390413307 GCCGC a score=89069.0 s hg17.chr7_random 293817 105 + 778964 CAC-AGCTGACCCTTGAAGCCAGGAGGTGATTTACAACATGTGCAAGGCAGTGAGCTCCATCAGCTCTGTGGCCTTCAACATTCACTTCAACTCAGACA---TCTCACC s panTro1.chrUn_random 177517772 105 - 240967748 CAC-AGCTGACCCTTGGAGCCAGGAGGTGTTTTACGACATGTGCAAGGCAGTGAGCCCCATCAGCTGTGTGGCATTCAACATTCACTTCAACTCGGACA---TCTCACC s mm5.chr11 74276333 108 + 121648857 CAC-AGTAGACCCTCGAAGCCGAGAGGTGATCCGAAATGCCTGCAAGGCTGTTGGCTCCATCAGCAGCACGGCCTTTGATATTCGCTTCAATCCTGACATCTTCTCCCC s rn3.chr10 61959394 108 + 110733352 CAC-AGTAGACCCTCGAAGCCGAGAGGTGATCCAAAACGCCTGCAAGGCTGTTGGCTCTGTCAGCAGCACAGCCTTTGATATTCGCTTCAATCCTGACATCTTCTCTCC s canFam1.chr9 14294054 108 - 53642819 CAC-AGCAGACCCTCGGAGCAGGGAGGTGATACGCAACGCATGCAAGGCAGTTGGCTCCATCAGCAGCACAGCCTTTGACGTTCGCTTCAACCCTGACATCTTCTCACC s fr1.chrUn 264583302 108 - 349519338 CAC-AACAGACGCCAAAAGTCAAGAGGTGGTCCTGAATGCATGCAAGGCAGTGGGTTCCATCAGCAACACATGTTTCGACATCCGCTTCAACCCAGACATATTCTCTCC s danRer1.chrNA 65294023 93 + 390413307 CACAAGCCAGCCTTC--ACCGAGGAGGACATCCTGAACATTTTCCCTGTTGTGAAGCACGTCAACCCCAAAGCCTCAGATGC---CTTCCA-----------TTTCTTC a score=0.0 s hg17.chr7_random 293922 6 + 778964 AGAAAG a score=2865.0 s hg17.chr7_random 293922 2 + 778964 AG s panTro1.chrUn_random 177517877 2 - 240967748 AG s mm5.chr11 74276441 2 + 121648857 AG s rn3.chr10 61959502 2 + 110733352 AG s canFam1.chr9 14294162 2 - 53642819 AG s fr1.chrUn 264583410 2 - 349519338 AG a score=745.0 s hg17.chr7_random 293924 4 + 778964 A-AAG s panTro1.chrUn_random 177517879 4 - 240967748 A-AAG s mm5.chr11 74276443 5 + 121648857 GCAAG s rn3.chr10 61959504 5 + 110733352 GCAAG s canFam1.chr9 14294164 5 - 53642819 GCAAG a score=-4179.0 s hg17.chr7_random 293928 29 + 778964 CAGTGG---GGACTGG----CCAATGCA-GAAGCCTG s panTro1.chrUn_random 177517883 29 - 240967748 CAGTGG---GGACTGA----CCAATGCA-GAAGCCTG s mm5.chr11 74276448 30 + 121648857 TAAGAA---TGGATAA----TCAGTGAGTGAACCCTG s rn3.chr10 61959509 33 + 110733352 TAAGAA---TGGATGGATACTCAGTGAG-TGAACCCG s canFam1.chr9 14294169 27 - 53642819 TTTTGGGTTGGGGTGG----ACA------GAAGACTG s danRer1.chrNA 65294116 24 + 390413307 CAGAGC---GGACAGG----CCAAGGTT-CAG----- a score=7252.0 s hg17.chr7_random 293957 25 + 778964 CAAAGT----GGAACAGA--GCGTCATGGGG s panTro1.chrUn_random 177517912 25 - 240967748 CAAAGT----AGATCAGA--GCTTCATGGGG s mm5.chr11 74276478 25 + 121648857 CAACTG----AGGGCAAA--GCATCATGGGA s rn3.chr10 61959542 25 + 110733352 CAACTG----TGGGCGGA--GCATCATGGGA s canFam1.chr9 14296572 27 - 53642819 CAAAGT----ACAGCAGGGTGCGTGACCAGG s danRer1.chrNA 65294140 29 + 390413307 CAAGGTAACAAAAACAAA--TGATCATCGGT a score=0.0 s hg17.chr7_random 293982 5 + 778964 TGGGG a score=2790.0 s hg17.chr7_random 293982 5 + 778964 TGGGG s panTro1.chrUn_random 177517937 5 - 240967748 TGGGG s mm5.chr11 74276503 4 + 121648857 TGGG- s rn3.chr10 61961636 5 + 110733352 TGGGG s canFam1.chr9 14296605 5 - 53642819 TGGGG a score=-8514.0 s hg17.chr7_random 293987 48 + 778964 GATGTGGGG--CCTGC-------CTGCTCATCTGAGCACTGCTCCCTG-AGGGTGTGA s panTro1.chrUn_random 177517942 48 - 240967748 GATGTGGGG--CCTGC-------CTGCTCATCTGAGCACTGCTCCCTG-AGGGTGTGA s mm5.chr11 74276507 41 + 121648857 ---CTTGGG--CTCTT-------CAG--CAGCAGAAAGCTTCTCCCC---TGATGTCA s rn3.chr10 61961641 50 + 110733352 GAAATGGGAGTGTCTC-------TTGCCCAGCCCTGACCTTGCCACCC-TGGCTGCCT s canFam1.chr9 14296610 49 - 53642819 GGAGGGGTG--TCCCC-------TGGCCCAGCCCTGACCTTGCCACCCTTGGGGGTGC s danRer1.chrNA 65294169 48 + 390413307 GCTTTGACA--CCTTCAACGTTTTTGCAGAGCTGATTGATGCGTCCT--TGG------ a score=-798.0 s hg17.chr7_random 294035 5 + 778964 TCTGC-- s panTro1.chrUn_random 177517990 5 - 240967748 TCTGC-- s mm5.chr11 74276548 5 + 121648857 TCTGC-- s rn3.chr10 61961691 3 + 110733352 CTT---- s canFam1.chr9 14296659 5 - 53642819 CCTGC-- s fr1.chrUn 264585234 5 - 349519338 TTTTC-- s danRer1.chrNA 65294217 5 + 390413307 --TGCGC a score=173143.0 s hg17.chr7_random 294040 140 + 778964 AGGCTTCCTGAAGGAGGGCTGTGAGCTCATCAGGGAGGCCCTGAG-CCTGTGGAAC-ATGGCT--GAGGCCAAGCCCATGGGG-ATTTGTGTCTACTTGCACCTCCTTGCTCATCT-CAGTACACTACAGGTGA-CTGTGCCGAGGT s panTro1.chrUn_random 177517995 143 - 240967748 AGGATTCCTGAAGGAGGGCTGTGAGCTCATCAGCGAGGCCCTGAGTCCTGTGGAAC-ATGCCT--GAGGCCAAGCCCATGGGGGATTTGTGTCTACTTGCACCTCCTTGCTCATCT-CAGTACACTACAGGTGAACTGTGTCAAGGT s mm5.chr11 74278707 144 + 121648857 AGGCTTCCTGAAAGAGGGCTGTGAGCTCATCAACGAGGCTCTGAA-CCTGTTCAACAATGTCTACGGAGCCATGCACGTGGAG-ATCTGTGCCTGTCTGCGTCTTCTGGCCCGCCTCCACTACATCATGGGTGA-TTATGCTGAGGT s rn3.chr10 61961694 144 + 110733352 AGGCTTCCTGAAGGAAGGCTGTGAGCTCATCAACGAGGCTCTGAA-CCTGTTCAACAATGTCTATGGAGCCATGCATGTGGAG-ATCTGTGCCTGTTTGCGGCTTCTGGCCCGCCTCCACTACATCATGGGGGA-TTATGCTGAGGT s canFam1.chr9 14296664 144 - 53642819 AGGCTTCCTGAAGGAGGGCTGTGAGCTCATCAATGAGGCCCTGAA-CCTGTTTAACAACGTGTACGGAGCCATGCACGTGGAG-ATCTGCGCCTGCTTGCGCCTCCTTGCTCGTCTCCACTACATTATGGGTGA-CTATGCCGAGGT s fr1.chrUn 264585239 144 - 349519338 AGGTTTTCTGAAGGAGGGTTGTGAGCTGATAAATGAGGCTCTAAA-TCTCTTCAACAATGTGTATGGTGCAATGCACGTAGAG-ATTTGTGCCTGTCTGCGCCTCCTGGCACGTCTTAATTACATCATGGGAGA-CCACCCTGAGGT s danRer1.chrNA 65294222 144 + 390413307 AGGCTTTCTAAAAGAGGGTTGTGAGCTCATCAACGAGGCCTTGAA-CCTCTTCAACAATGTGTATGGAGCCATGCATGTGGAG-ATCTGTGCCTGCCTGCGTCTTCTGGCTCGACTCAACTACATCATGGGCGA-TCACCCAGAGGT a score=21643.0 s hg17.chr7_random 294180 837 + 778964 GGGCCTTGAGCATCTCCTGGGCTGTGTTAGCAAAGGGCTCTGGGCCTGGCCTGGCATTGA--GGGATGGC---AAATAAGGGGCCTGGGGTTGCATTGTCACCCCCTATGGTAGCATAAAATGAGAGAGTCC-GACCTGCAGGACTGGAACCCTA-----TCAAGGGGG-TTAGGAGGCTGCTCACTTTCCCTCAG-GGACCCATGTGGAGGAGCTGAGGGAGGTTAAGGAGACCCTAGGGACTCACTTGTTCTGTCTGGGCT---TCCCTCTGCTCCATCGTTTGATGACCATT---------TTCTGGGAAGAGCTCAGGAACCTCCTGTGCTCT-------GGTGAGATGGG---GCCTCCCCT------CACAGGGTAT-TCTGAGACTGTGAGTGAGAAGCT--AACACAGT-----GCCTTGCAATACTCACGGGAGCTGT---CATCCTCTGTGACCATCACGTGGCCTTGTAGTGTTCAGAC--------TGCCTGGCCTGCCTGGGGTTTGGTGA------GGCTGTTTTG-TGGTCAGC------------TGCTTTAGAATCTCACTTTCTCTGC-AATCAAACAGTGACTGTCTTTGTGTCTGTTTATGGGTTTAAAAAA-TCCTAATATTTCATTT----ATAGTAGTTTCAGCT--------TGCATGTGTTTATTTGTATAAATTTTATTAGAATAAAGAGAGCTTAAGACAACAGCATTTTAA-GGTCTT--AATGAGGCATAGACTTTCAT-GTCACAACA---GCTATTGTTGACCTC-TGTTTGCTACCTTTATGTAATGTATACACATAAAGTACAGCCAGAGGTGACTAGAGCTGAGCTGCTTGGGCTTGCTTGCTGGCCTACAGTCAGGTGGACTCTGGCTGTGAGGCGGTGCCCACCCTGGATCTACATCCCCCA s panTro1.chrUn_random 177518138 843 - 240967748 GGGCCTTGAGCATCCCCTGGGCAGTGTTAGCAAAGGGCTCTGGGTCTGGCCTGGCATTGA--GGGATGGC---AAAAAAGGAGCCTGGGGTTGCATTGTCACCCCCTATGGTAGCATAAAATGAGAGAGTCCAGACCTGCAGGACGGGAACCCTAAC--ATCAAGGGG--TTAGGAGGCTGCTCACTTTCCCTCAGAGGACCCATGTGGAGGAGCTGAGGGAGGTTAAGGAGACCCTAGGGACTCACTTGTTCTGTCTGGGCT---TCCCCCTGCTCCATCGTTTGATGACCATT---------TTTTGGGAAGAGCTCCGGAACCTCCTGTGCTCT-------AGTGAGGCGGG---GCCTCCCCT------CACAGGGTAT-TCTGAGACTGTGAGTGAGAAGCT--AAAACAGT-----GCCTTGGAATACTCATGGGAGCTGT---CATCCTCTGTGACCATCATGTGGCCTTGTAGTGTTCAGAC--------TGCCTGGCCTGCCTGGGGTTTGGTGA------GGCTGTTTTG-TGATCAGC------------TGCTTTAGAAGCTCACTTTCTCTGCGAATCAAACAGTGACTGTTTTCATGTCTGTTTATGGATTTAAAAAAATCCTAATATTTCCTTT---TATAGTAGTT-CAGCT--------TGTATGTGTTTATTTGTATAAATTTTATTAGAATAAAGAGAGCTTAAGACAATAGCATTTTAA-GGTCTT--AATGGGGCATAGACTTTCAT-GCCACAACA---GCTAATGTTGACCTC-CTTTTGCTGCCTTTGTGTAAAGTACACATAAAAAGTGCAGCCAGAGGTGACTACAGCTGAGCTGCTTGGGCTTGCTTGCTGGCCTGCAGTCAGGTAGACTCTGGCTGTGAGGCGGTGCCCACCCTGGATCTACATCCCCCA s mm5.chr11 74278851 631 + 121648857 GTG--------------TAGGCTGTGGCA-------CTTCTGGCT---GTCACGTATTAGTTGGGACTGCATGAAAGAAAGGTCTGGGGACCCCACCATCACCCCCTGT-------TAAAAC-AGGGAG---------------------------------AATGGG--TT----------------------------TCCATGTAG-------------------GGAGGTCCAAAG----TTCTTGTTCCG--TGAGCT--------------CATCAGCTCTTGTTGCTG---------TCCTTGGGAGAACTCAGTAGCTGCCTGTGCTCT--------GCAAGGTGAACATGACACCGCTCAGGGACACAGGCAAG---AGAGCCAGTGAGTAAG-AGCTGCGACACAATACCTGGCCTTTGAGTGACCATGGGAA-----------------GACCAGCCGATGGTCT------------------------CTTGTTTTCTTTGGTGTTCTGTGGCATTCCAGCTATTTTGCTGGTCTTCAGGCTCTCGGTATGCTTTGGG---CCCCCTGCTCTCT----CAACCAGAGGCTGTCCTAGGA-------AAGCTTTTTAAAAA---------------TT----AATGCATTTTCAG-------------ATGTTGGTTTTTGCATAGGCTTTGTTAGG--GAAGAAGATGTAGAATGATAAGTTTCGGATGGTCTC----TGTGGCGAAGACCTCCTCAGTCAAAGCA---GCCATTAT----------CCTTCTGCCTGTGTGCAAAGG----ATAGAAACTGCA---------GGCTAGC-CCGTGCTGGGTGGGGCTGCT-------------------------CAGTTGGGGAGCAGTGCTCACCTGAGATGGA-------TA s rn3.chr10 61961838 635 + 110733352 GCG--------------TTGGCTGTGGCG-------CTTCTGGCG---CTCATGTATTAGTTGGAGCTGC----ATGAAAGGTCTGGGGGCCCCACCAT---------------------------------------------------CACTGCCTTGTTAAA-----ACAGGAGAATGCTC----TCCCTTGG-GTTTCCACGTAG---------TGGCATCCCAAGAGCTCCAAAG----TTCTTGTTC------------------------CATGAGCTCTCAACCATTCACTTGCTGTCCTTGGAAGAGCTCAGTAGCTACCTGTGCTCT--------GTAAGGTGAG---------CAT------GACATGACAGCTCAGAGATGGTGGC-----------AATAGAGT------------------TGTAAGAGCTGT-GGCACAATATCTGGCCTTTGAGTGACCGTGGGAAGACCAGCCAAAGGTCTCTTTTGTTTTCCTCAGTGTTGTGTGA-----------TTTTA-TT-CCAGC------------TATTTCGAT---GGCCCTGGGCTCT----CAATCAGAGGCTGTC--AGGG-------AGGTGTTTTAGAAG---------------TG----AATGCATTTTCAGTTAAGTTTCAGATCTGTTTGTTTTTGCATAGACGACTTTAGG-----GAAGATGTAGAACAGTAAGTTTCAGGTGGTCTC--AGTGTGGCCAAGACCTCCAGAGTCACAGCCCCTGCTATTAT----------CTTGCTGCCTGTGTGCAAAGG----ATAGAAGTTGCA---------GGCTAGC-CCA-------------TGCTGGTGGGGCTGCT-------------CAGTTGGGAAGCAGTGCTCACCTGAGATGGA-------TA s canFam1.chr9 14296808 722 - 53642819 GGGCCTTGAGCACCCTCCGGGCTGTGTCAGCAGAGGCCTTGGCGCCTGGCCTGGCACTGG--GGGATGGC---AAGTGAGGGAGCTGGGGCTGTGTTCTCACCCCATGC-----CGCAGGAAGCGGGAGTCCAGGCCTGGGGAGCTGAACCCC------ATCTGTGGGGCCGAGGGTGCTGCTC-----TCCTTGG-GGCCCCCTG-GGAGGTACAGCCAGAGACCAGGGAGACCCTGGGGAGCTGCTCATTCTGCCTGGCTTTTCTTCCCCTGCTCTGCAACTCTGTAGTTATA---------TTCTTGGGAGAGCT----GCCCTGCTGTGGACACAGTCGGAGTGATGGCAG---GGCCTCCCT------CGCAGGCACA--------TTGGGAAGGATAGATT--CTCAGAGT----------CGGAGCTGCATGA-AGCTGTTGGCAGCATCTCTAAGTGCTCCTTGGCCTTCTGGTGTTCACC---------TGCCTCCCTGGCCTGGGCCTTTGCCC---------------G---------------------TGCTTCACG-----------------GGGCAAGTGCAGCCTGTCT------------CTGCTCCTCAA----CCCTAGACTCTTATTTGCGTGTGCCCTTTTTAGAT---------CTGTATATATCTTTGCACAGATTTTGTTAGG-GGTAAAAGGCTCAAGACAAGCTATTTAAAAAGGCCTCGGAGTGGGGCATGGCCTTCCGTGCTCACCGTAA--GTGAGTTTTGAACACTCCTTTGCT----------------------------------------GATGAGG-CTGAGTTGCTCGGGG-----------------GCCAGGCGGAC--TCGATGTGGGGAGGCACCCACCCGGGATGACGCTTCCCCA a score=1861.0 s hg17.chr7_random 295017 7 + 778964 CCCTCTC s panTro1.chrUn_random 177518981 7 - 240967748 CCCCCTC s mm5.chr11 74279482 7 + 121648857 CCATCTC s rn3.chr10 61962473 7 + 110733352 CTATCCC s canFam1.chr9 14297530 3 - 53642819 CC----T s danRer1.chrNA 65297596 7 + 390413307 CCTTCTC a score=117250.0 s hg17.chr7_random 295024 95 + 778964 -TCCTTAGTCCCTGAGTAACCAAC--AAGGCCGTGCTAATGAGCAGGCAAGTGATGGGCATAGGGTACCCCAATACTATCTGGGAAGATTTGAAT------GCC s panTro1.chrUn_random 177518988 95 - 240967748 -TCCTTAGTCCCTGAGTAACCAAC--AAGGCCGTGCTAATGGGAGGGCGAGTGATGGGCATCGAGTACCCCAGTACTATCTGGGAAGATTTGAAT------GCC s mm5.chr11 74279489 98 + 121648857 -TTTCCAGGCCCTCAGCAATCAACAGAAGGCCGTGCTGATGAGTGAGCGGGTGATGGGCATTGAGCACCCCAACACCATTCAGGAATATGTGAGT-----AGCC s rn3.chr10 61962480 98 + 110733352 -TTTCCAGGCCCTCAGTAATCAGCAGAAGGCTGTGCTGATGAGTGAGCGGGTGGTGGGCATTGAGCACCCCAACACCATCCAGGAATATGTGAGT-----AGCC s canFam1.chr9 14297533 98 - 53642819 -CTCCCAGGCCCTGAGTAACCAACAGAAAGCAGTGCTGATGAGTGAGCGAGTGATGGGCATCGAGCACCCCAACACCATCCAGGAATATGTAAGT-----AGCC s fr1.chrUn 264585455 103 - 349519338 -TCCACAGGCTCTTAGCAATCAACAGAAGGCTGTTCTGATGAGTGAGCGGGTCCTTGGCATTGAGCACCCCAACACGATTCAAGAATATGTAAGTCATCGCACC s danRer1.chrNA 65297603 98 + 390413307 TTTTTAAGGCTCTGAGCAACCAGCAGAAGGCTGTGCTGATGAGTGAGAGAGTGCTGGGTATTGAACATCCCAATACTATTCAAGAATATGTAAGT------GTC a score=131996.0 s hg17.chr7_random 295119 198 + 778964 A-TCTGGGCTGGAGCT-----------GTTGGGATTAGGGTCTGTGGCTGCCTTGGCTTGTCATGGTGCCACCCACAGATGTGCCT-GCCCTGTGCTGCTTCTCCAGCAACCGGCTGCCCATGGCCCTGAGCCTGTCACACCATTCTTGCTACCTCATACTGCTTGTGTTT-GAAAAACCCATCCAGAGATGGCATTGCTGGATGTGAGTGC s panTro1.chrUn_random 177519083 198 - 240967748 A-TCTGGGCTGGAGCT-----------GTTGGGATTAGGGGCTGTGGCTGTCTTGGCTTGTCATGGTGCCACCCACAGATGTGCCT-GCCCTGTGCTGCTTCTCCAGCAGCCGGCTGCCCATGGCCCTGAGCCTGTCACACCATGCTTGCTACCTCATGCTGCTTGTGTTT-GAAAAACCCATCCCGAGATGACGCTGCTGGATGTAAGTCC s mm5.chr11 74279587 201 + 121648857 AGGCTGGGGTTGGCTT-----------GTAGGTGTAGGTGCCTGAGGCTACCCTGACCCACCGTGACCCCACCCACAGATGCACCTGGCCCTGTACTGCTTCGCCAGCAGCCAGCTGTCCACAGCCCTGAGCCTCCTGTACCGTGCCCGCTACCTCATGCTGCTTGTGTTTGGGGAGGATCACCCTGAGATGGCATTGTTGGATGTGAGTGT s rn3.chr10 61962578 201 + 110733352 ATGCTGGGGTTGGCGT-----------GTAGGTGTGGGTGCCCGAGGCTACCCTGACCCACCATGACCCCACCCACAGATGCACCTGGCCCTCTACTGCTTTGCCAGCAGCCAGCTGTCCACAGCCCTGAGCCTCCTGTACCGTGCCCGCTACCTCATGCTGCTTGTGTTTGGGGAGGACCATCCTGAGATGGCATTGTTGGATGTGAGTAT s canFam1.chr9 14297631 209 - 53642819 GTGGGGGGACTGGGCCTTggggcccgggccggggccggggccTGGGCCTGAAGTGGCTCCCCCCG---CCCCCCGCAGATGCACCTGGCCCTGTACTGCTTCGCCAGCAGCCAGCTGTCCACCGCACTGAGCCTGCTGTACCGCGCCCGCTACCTCACCCTCCTCGTGTTTGGGGAAGACCACCCCGAGATGGCCCTGCTGGACGTGAGTGC s fr1.chrUn 264585558 198 - 349519338 A-GATAACATGAACATTTA--------GCTTACGTGTTGGCCCCAGACTCATCTG-CTTATCTT----TTCTTTGCAGATGCACTTGGCTCTATACTGCTTTGCCAATGGCCAGCTATCAACTGCCCTAAAACTCTTGTATCGAGCCCGTTACCTCTTGCTGCTGGTTAGTGGGGAGGACCACCCAGAGATGGCGCTGTTAGATGTGAGTGC a score=27877.0 s hg17.chr7_random 295317 91 + 778964 TGAAAAGGGG-----------------------GAAGCACCTTTGTCCTGGGGGATTAGGAGCTGACCAGATTCCTCCTGACTCC-CTCCCAGAACAA-GTGGGGCAGGTGCTGCA s panTro1.chrUn_random 177519281 91 - 240967748 TGAAAAGAGG-----------------------GCATCACCTTTGTCCTGGGGGATTAGGAGCTGACCAGATTCCTCTTGACTCC-CTCCCAGAACAA-GTGGGGCAGGTGCTGCA s mm5.chr11 74279788 106 + 121648857 TGGCGAGGAGAATGTGGG---TGACCAGACCGTGGATGGACTTTGTACAGGGG----AGGAACTGACTTGGTTTCTTCC--TTCT-CCCCCAGAACAACATCGGGCTGGTGCTGCA s rn3.chr10 61962779 106 + 110733352 TGGAGAGGAGTCTAGGTGAACAGGCCGTG----GGATGGACTTTGTGTAGGGGG---AGGAACTGACGTAGTTTCTTCC--TTAT-CCCCCAGAACAACATCGGGCTGGTGCTGCA s canFam1.chr9 14297840 94 - 53642819 TGGGCAGGGG-----------TGGC--------GGGGCAGCCTCATCCCGGGGAAG-CGGAACTGACCCGGGGCCCTCC--CGCTGCCCCCAGAACAACATTGGGCTGGTGCTGCA a score=2218.0 s hg17.chr7_random 295408 10 + 778964 ATTAATGATG s panTro1.chrUn_random 177519372 10 - 240967748 ATTAATGATG s mm5.chr11 74279894 10 + 121648857 TGGAGTAATG s canFam1.chr9 14297934 10 - 53642819 TGGAGTGATG a score=100.0 s hg17.chr7_random 295418 1 + 778964 C s panTro1.chrUn_random 177519382 1 - 240967748 C a score=87729.0 s hg17.chr7_random 295419 268 + 778964 CCCCCAGAAGATGTGTT-TACAGTGGCTAAGCAAATACACTATGCAGAAACCTAAATGAAGACACG-TGAATGGGGTGTAT-GGACATCAGTTAGCAACTG-GGAAACAGGTGCCTCTCAGGCCTC-----------------------------TCGTGCTCCAGCAAGTGTG---GAATATG-------------CCTGTGCCCATGA-------------------------------------------------GTGTAGACATC--------------------------------------------------------TGGAGTG-----------------------TATACATT--------TGGCTGCTGCTTTTGCTGCCACTATCCCCAGGTCCAAACTGGCTTAAAGTCCAGGTTTTAAGTAAAAAAATGGGAG-GCTTT s panTro1.chrUn_random 177519383 267 - 240967748 CCCCCAGAAGATATGTTCTGCACTGGCTGAGCAAATATACTATGCAGAGACCTAAATGAAGACACG-TGAATGGGGTGTGC-GGACATCAGTTAGCAACTG-GGAAACAGGTGCCTCTCAGGCCTC-----------------------------TCATGCTCCAGCAAGTGTG---GAATATG-------------CCTGTGCCCATGA-------------------------------------------------GTGTAGACATC--------------------------------------------------------TGGCGTG-----------------------TATACATT--------TGGCTGCGGCTTTTGCTGCCACTATTCCT-GGCCCAACCTGGCTTAAAGTCCAGGTTTTAAGT-AAAAAGTAGGAG-GCTTT s mm5.chr11 74282334 333 + 121648857 CCCCTAAAAGATGGTTT-TGCACTGGTTCAATGAATATTCAATGCAGAGGCCTAATTGAAGACACG-AAAGTAAAGTGTGT-AGGCATCAGCTC-CAGCTGAGGGGGCAAGTGCCTCCCCAGC-------------------------------------ATCAAGCAGATGTG--------TG-------------TGTGTGTCCATGC-------------------------------------------------CTGTGGATGTC--TTGCTCCGTCCTTCCTGATGTACATAGCCCAGTCAGTTCTGAGTGG-------ATGACGTGCAGATGCAATTTCTCAGGTCATTTATATGTTTGACATTATGGCTGCTGCTTTTGTTGCCACTACCCCTGGGTCCAGCCTGGCTTAAAGTCCAGGTTTCAGCCAAAAAAGATGGGG-GCTTT s rn3.chr10 61965159 315 + 110733352 CCCCTAAAAGATGGTTT-TGCACTGGTTCAATGAATATTCAATGCAGAGGCCTAATTGAAGACAAGAAAAATGAAGTGTGTAAGGCATCAGCTC-CAGCT--GGGGGCAAGTGCCTCCCCAGCCTCAAGCCGATGTATGTCCATGCCTGTGGATGTCTTGCTCCGTCCTTCCTG---ATGTATATAGCCCAGTCAGTTCTGAGTGGATGA------------------------------------------------CGTGCAGATAACAATTTCTCA-----------------------------------------------GGTCATT-----------------------TCTATGTTTGACATTATGGCTGCTGCTTTTGTTGCTACTACCCTTGGGTCCAGCCTGGTTTA-------------AGCCAAAAAAGATGGGG-GCTTT s canFam1.chr9 14300099 346 - 53642819 CCCCCCAAAGATGTTTT-TGCACTGGTTCAATGAATATACGATGCAGAGGCCTAATTGAAGATACA-TGAATGGAGTGCGT-GGGCGTGAGTCCCCAGCTG-GGGGGCAGGTGTCCCCCTGGCCTCC----------------------------CCATCTTCAAGCAGGTGTGTGCGAGTGTG-------------TCCATGCCTGTGAGCGTCTCGATCCGTCCTTCCTGACTTGTACATAGCCCCACCTTGGTTCTGAGTGGATGAC----------------------------------------ATGAAGAGATTTCTCAGGTCATT-----------------------TGTATGTTTGACGTTATGGCTGCTGCTTTTGCTGCCACTGCCCCAGGGCCTGACTTGGCTTAAAGTCCAGGTTTGAAGCCAAAAAGAAGGGGAGCTTT a score=9973.0 s hg17.chr7_random 295687 110 + 778964 TTGCCATAcagctacttgagaggctgaggtgaaagcatcactggagcctaagagtttgaggctgcagtgacccatgattcagccactgcactgacacagtgagaccTGCG s panTro1.chrUn_random 177519650 110 - 240967748 TTGCCATAcagctacaaaagaggctgaggtgaaagcatcactggagcctaagagtttgaggctgcagtgacccatgattcagccactgcactgacacagtgagaccTGCG a score=3620.0 s hg17.chr7_random 295797 37 + 778964 TGTGCCTTTCTACAGAGAATACTTCTGGGGCATTTGG s panTro1.chrUn_random 177519760 37 - 240967748 TGCACCCTTCTACAGAGAATAGCTCTGGTGCATTTGG s rn3.chr10 61965869 34 + 110733352 TAAGCACTTACACAAAGAAGCTCTTGGGTG---TTGG a score=1091.0 s hg17.chr7_random 295834 6 + 778964 GGATCC s panTro1.chrUn_random 177519797 6 - 240967748 GGATCC s rn3.chr10 61965903 5 + 110733352 GGCTC- s canFam1.chr9 14300848 6 - 53642819 GGCTCC a score=111427.0 s hg17.chr7_random 295840 425 + 778964 CTACAGTCCCGG--AC---CCTCCCTGTCCCCTG-----------------------------------CTGCCTGTGCT-TCTTCCC---------------TTGCCTGCTG------------------------TCAGAGCCTAA----------CATGGAGG------------AGGAG---GTTGCTGCCCT-GTGAGCCTG-------------------------------------AGGGAGCTGTGTCT-GACTGGGGCT--------------------------------TCTGTCTGGG------------------------------------------------------------GTTTTGCGAA------------------------GAGCTACTTATGAATATGGTCTGTCCAGATACCTTGTTTCAAAGGAAGTGAGCATGAGGTAGCAAGTGTAGCCACCCCACAGCTGATAAACAACTTTGTCTTGTTTTTAAATCATCA-GTCTTCATTTCACATTGGAATAAAGTAAT----TGAAACATGCTACCCCAGCCTCGCCCGTGTGTTCTGTAAGCCAGACTCATT---TCGTTGTGTGGGCT--GTTGTCAG-AAA---TGTTATAAAAAAAT---------------TATGCATAAATAAGATCAAATGTAAAAGTATGCTTATAATGTCA s panTro1.chrUn_random 177519803 424 - 240967748 CTACAGTCCCGG--GC---CCTCCTTGTCCCCTG-----------------------------------CTGCCTGTGCT-CCTTTCC---------------TTGCCTGCTG------------------------TCAGAGCCTAA----------CATGGAGG-----------CA-------GTTGCCACCCT-GTGAGCCTG-------------------------------------ATGGAGCTGTGTCT-GACTGGAACT--------------------------------TCTGTCTGGG------------------------------------------------------------GTTTTGCGAA------------------------GACCTACTTATGAATATGGTCTGTCCAGATACCTTGTTTCAAAGGAAGTGAGCAAGAGCTAGCAAATGTAGCCACCACACAGCTGATAAACAACTTTGTCTTGTTTTTAAATCATCA-ATCTTCATTTCACATTGGAATAAAGTAAG----TGAAACCTGCTACCCGAGCCTCGGCCATGTGTTCTGTAACCCAGACTCATTG--TGGTTGTGGGGGCT--GTTGTCAGAAAA---TGTTATAAAAAATT---------------TATGCATAAATTAGATCAAATATAAAATTATGCTTATAATGTCA s mm5.chr11 74282847 676 + 121648857 CTACAGGCTTTG--ACTTGCCTCCCTGCTCCCTGTACCCCAGGTGAGCATAACCTTGGGGGCCAACAGTCTGAATGTATC-TTTCTCCCCATTTAAACCTGAGCTGCCTAATGCACAGTTGGGTAAGGGGTGGGGACCCAGGGCTGAATTGTGGATCCCAGGGAAAGT-GCTATGCACAGGAGTGATTTGTCACCTC-TGGAGCCTGGCTCCTCCTTGGTCTTTGCCATATAAGCACTTATACAAAGAAGCTCTGGGG-TGTTGGGGCTCCTACTGCCTTGGCTGCCCTCTCTCTCCCCTCCCTGCCTGTGTCGCTTCTCTTTGTCTGCTGTCCCTGAAGGAGATGGCCACCCTTTGAGCTTAAGGGAGCTGTTTTAGGCAGAGCCTCTGCTTGGGGCTTTTCTGGAGCTGCTGATGGATAGTATCTGTCCAGGGACCTTGTTTCAAAGGGAATGGGCATGGGCCAGCAAG----GCACCCCCACAGCT-ATCAAGAACGTTTTCTTGTTTTTAAACCATCACGTCTTCATTTCACATTGGAATAAAGTGAGTTTTTGAAACCTGCTGCCCCAGCCTTTCCTGTGTGCTCTGTG----GAACTTGTTC--CTATTGCTTGAGTG--AGGCTCAG-AAGTACTGCTGGGAGGTAAT---------------TGTGTATATATTATGTCAAACTCAACGTTATGTTC---AAGTCA s rn3.chr10 61965908 410 + 110733352 CTACTGCCTTGGCTGC---CCTCTCTCTCTCCCCTCC--------------------------------CTGCCTGTGTCGTTTTTCT---------------TTGTCTGCTG------------------------TC-------------------CCTGAAGG------------AG------ATGGCCACCCT-TTGAGCCTA-------------------------------------AGAGAGCTGTTTTA-GGC-AGATCC--------------------------------TCTACTTGGG------------------------------------------------------------GCTTTTCTG-------------------------GAGCTGCTGATGGATAGTATCTGTCCAGGGACCTTGTTTCAAAGGGAATGGGC---GGCCAGCAAG----GCATCCCCACAGCT-ACTAAGAACGTTTTCTTGTTTTTAAACCATCACATCTTCATTTCACATTGGAATAAAGTGAGTTTTTGAAACCTGCTGCCCCAGCTTCCCCTGTGTGCTCTGTG----AAACGTGTTC--CTATTGCTTGAGTGAAGCTGTAAG-AAGTACTACTGGGAGGTAAT---------------TACACATACATTGGGTCAAACTCAA---CATGTTC---AAGCCA s canFam1.chr9 14300854 453 - 53642819 CATGAGCCCCAG--CT---ACTCCCTCCCGC--------------------------------------CCGCCCGCGCTGCTTCTCT---------------GTGCCTGCTG------------------------TTGGAGC--------------CCCGATGGGTCGGTGGGTCAGGGAG---CTCGCCACCCCAGTGAGCT---------------------------------------GGGGAGCTGTCCCTGGGCCGGGGCC--------------------------------TCTGCCTGGG------------------------------------------------------------ACTTTGCGGG------------------------GAGCTGCTGATGGGTATAGTCTGTCCAGATACCTTGTTTCAAAGGCAGTGGGTGTGAGCTAGCAAGCGGAGCCTCCCCACCGCTGATCAAGAACTTTTTCTTGTTTTTAAACCATCACGTCTTCATTTCACATTGGAATAAAGTGAGTTTTTGAAACCTGCTGCCCCAGCCTCTCC--TGTGCTCTGTA--CCAGTCTCCTCCATCTGGGGGGAGGGCT--GTTGCCAC-ACCTGGTACTAGTAGAAGAGTTTAAAACACACGAATGTGTACAAATTAGGTCAGATGGAAGACTCTCCTTAAAATATTG a score=0.0 s hg17.chr7_random 296265 14 + 778964 CTTGAGTGTGTGGT a score=3240.0 s hg17.chr7_random 296265 8 + 778964 CTTGAGTG s panTro1.chrUn_random 177520227 8 - 240967748 CTTGAGTG s mm5.chr11 74283523 8 + 121648857 CTGAAGTG s rn3.chr10 61966318 8 + 110733352 CTGAAGTG a score=154.0 s hg17.chr7_random 296273 6 + 778964 TGTGGT s panTro1.chrUn_random 177520235 6 - 240967748 GGAGGT a score=0.0 s hg17.chr7_random 296273 6 + 778964 TGTGGT a score=10123.0 s hg17.chr7_random 296279 38 + 778964 AAGAGGGTAGAGTCACAGGAAATCTGTTGGGGTTTACA s panTro1.chrUn_random 177520241 38 - 240967748 AAGAGGGTACAGTCACAGGAAATCTGTTGGGGTTTACA s rn3.chr10 61966326 38 + 110733352 GAAGGGGTATGGCCCCAGCTATCCAGCTGGGCCCTACA s canFam1.chr9 14301307 38 - 53642819 AAGGGGGTGGAGTCACAGGCGCCCAGCTAGAGTTTACC a score=52596.0 s hg17.chr7_random 296317 514 + 778964 CCCCTGCTACTTACCAAGCTCATGAGAGTG------TGGCAGAGGTGATCATCACCTGATATTTGTGGCAGAAGAGAAAAGTCCAGCGTGAAGGC---CAGGTAGGGGAGACGTGCCAGGCTGTGGGGCCAGGCCCTGCGCATGCTGGGCCTGTT--ATGTCA-CTGAACATCTAACTACCCGGGAACCAGCTCTTTTCACATCATCTGAGGTAAGAGGATGGAGAAGCACTCTCCAGAAGTCACACTGCGCTGGGAGAATGGAGGAGAGCCTACAACTCACCATCCTAAGGTAGGTTTTAGATTGA-GCTGAACTGTCT--TCGAGAGCTAATGAGATGGGAGGAAGACAGTCCCCCAGG-TGCACCTGACAGCCAGAGCCTATGAATTTAGGGGGGTTGTGT-GGGGGTGGCCTGTCCCTATGAGAAGAGGAGCTTAAAGCTACTAAAGCTGGTGGCCGCTGCTCTGCCATCCCTCTACAGAGCAGGCAGGTCCTCAGCTGCATGTATAGCTGAATCTCTTTTGGAGTG s panTro1.chrUn_random 177520279 521 - 240967748 CCCCTGCTACTTACCAAGCTCATGAGAGTG------TGGCACTGGTGACCATCACCTGACATTGGTGACAGAAGAGAAAAGGCCGATGTGAAGGC---CAGGTAGGGGAGAGGTGCCACGCTGTGGCACCAGGCCCTGCGCATGCTGGGCCTGTTAGAT-TCACCTGAACATCTAACTACCTGGGAACCAGCTCTTTTCATATCATTTGAGGTAAGACGATGGGGGAGCACTCTCCAGAAGTCACACTGAGCTGGGAGAATGGAGGAGAGTCTACATCCCACCAGCTTACGGTAGGTTTTAGATTGAGGCTGGACTGTCTTGTGGAGAGCTAATGAGATGGGAGGAAGACAGTCCCCCAGGATGCACCTGACAGCCAGAGCCTATGAAGTTAAGGGGGTTGTGTGGGGGGTGGCCTGTCCCTATAAGAGGAGGAGCTTAAAGTTCTTAAAGCTGGTGGCTGCTGCTCTGCCATCCCTCTACAGAGCAGGCAGGTCCTCAGCTGCACAAATATCTGAATGTCTTTTGGAGTG s canFam1.chr9 14301345 461 - 53642819 TGACTTCCAGTCACTAGACCTATGAGAATGGCTCCTTCGTAGAGCTG--------------TGTGTGGT--------ACAGGTTAGAGTGAAGGCGGATGGGAATGAGGGGTGGGGTAGGGTAGGGGCCCAGGGCCTGGACCTGCTGGCCCTGATAGGT---GCCTGAACACCTGATT--TTGAGCATCTGTGCTTGTC----CCTTTGAGTC---AGAACTGGGCAGCAACCCCTGGAAGACTAGGAGTGCTG---AAATGGAGGGGTGTC--AAGTTTGCTGTCCTAGGGTAAATTTTGGGTGGA--CTAGGCTCTC---TGGAGACTCAGTGAGATGGAGGAAAGGGTAACCCCAGAG-GGGGCTTGAGGGGCAGGGCCTGTGAGGTGGGAAAGGTTCTGAGGGGAGCTGTCTG--------AGAAGGGAAG--------TCCCATAACTGGCAGCTGCTACTTGGCCATCCTT-----GAGCAGGTAAGGCCTCAGCAAC----ATACTTGAATACCTTTCTGGGTA a score=12401.0 s hg17.chr7_random 296831 115 + 778964 TTAGAGAG--------TCCT--CTATGTCTTAGAAATTTTG-AAAAGAAAAACAAATCTCAATTTTAATGTTGATTGGTTTCTCTGAGCCAGTT-GGGAAAAAAGATGTCCTTCACCTCAAAGGTTT s panTro1.chrUn_random 177520800 115 - 240967748 TT--AGAG--------TCCT--CTATGTCTTAGAAATTTTGAAAAAGAAAAACAAATCTCAATTTTAATGTTGATTAGTTTCTCTGAGCCAATTGGGGAAAAAAAACGTCCTTCACCTCAAAGGTTT s mm5.chr11 74283886 107 + 121648857 TTCAAAAG--------TCCTAGTTACATTTTATGACTTT---ATGAAAAATACCAGCCCTAATTT--GTGATCCTT--TTTTCCTAAGCCAGT---GGGAGAAAGATGTTTCTGATCTTGATA--CT s canFam1.chr9 14301807 112 - 53642819 TTGGGGAGAGTTTTTTTTTT--TTGTCTTTAACAAATTCTCTGGAGAGAAAAAATATTCCAACTT--------GTTACTTTTCCTGAGCCAACT-----GGAAAGACATCCTTGACCTTGAAGTTGT a score=41627.0 s hg17.chr7_random 296946 293 + 778964 AAGT-------GACA-CCGAAGGGTAGCCACCAGTG-TCTCGGCCACTGAAGCCT--CATGCAT-------GCTCTCACTACCAGTT--TGATTTGCAGC-------CCCATAGTTGTG-TTGTACTAAATATTCTTTCC--------TCTGG-CCTTG-----------TCCAGTGAACACGGTTCACATGGCTAA-----------------------------------CACCACTTCTTGAGATGCGAGCACCAT---GCAAAGCTGAGA---------ATGGATTGGGTTTTGTGACGATTGTGCCTCCTCCTCACCTGAGAGGCCCATTTTTCCTGGTTGATT-CATTAAGTGTATTGGTGCTGTCAGTCGCCTCT-GGACAAT s panTro1.chrUn_random 177520915 294 - 240967748 AAGT-------GACA-CCGAAGGGTAACCACCAGTG-TCTCGGCCACTGAAGCCT--CATGCAT-------GCTCCCACTACCAGTT--TGATTTGCAGC-------CTCATAGTTGTG-TTGTACTAAATATTCTTTCC--------TCTGG-CCTTG-----------TCCAGCGAACACGGTTCACATGGCTAA-----------------------------------CACCACTTCTTGAGATGCGAGCACCAT---GCAAAGCTGAGA---------AGGGATTGGGTTTTGTGACCATTGTGCCTCCTCCTCACCTGAGAGGCCCATTTTTCCTGGTTGATT-CATTAAGTGTATTAGTGCTGTCAGTCGCCTCTGGGACAAT s mm5.chr11 74283993 368 + 121648857 AAGT-------AACATCCGTTAAGTACTTACCAATGATTTTGACCATTTAAGCCTACTGTGTAT-------GTTCCCTTTATAATTTGGTGATTTGAAGCAAGGTCTCTTAGAGCCAAGACTGGCCTCAAAATCCCTTTTAAGCTGAGTGTGA-CTTTGAGTTCCTGGTTACCGGTGTGCACATGACACCTGGTTCATTTTGTCGTAAATGTGTTTGTTGACTTGTTGGACTCCCCACTTCTGGAAAG--GGACATCAC---ACAAAGTTGAGGCTGCTCTGCATGAGCTTAATAGTTTAATCA-GATGCTTACAAGTCACCCTAGAAGCCCATTTTTCTTGGTTGGTTCCCTTAAGCATATTAGTGTTATTAAATTCCTTT-GTAAAAT s canFam1.chr9 14302071 294 - 53642819 AAGTTTTCTAAGCCA-------------TGCCGGTA-GAATCCCCGTTGCTGCCT--GATGCATGCACCCCGCCCCCACCACCACTT--TCCTTGGCAGT-------TTCAAGGTTGTG-TT---CTGAACGTGCCTTCC--------TATGGTCTTTG-----------TCCTCTGAACACCAGCAATGTGCTTCA-----------------------------------CAGCACTTGCAGAAGGG-GGGCATTATCTGGTAAGGCTGAGA---------AATGCTCAGGTTTAATTACCATTGTATCCACCAGTCACCTAGAAGGCCCG-TTTTCATGGTTGATC-CGTTAAGGATATTGGTGCTGTCAGATACCTTC-CAACAAG a score=38453.0 s hg17.chr7_random 297239 320 + 778964 TCAAATGACAACTGGCTGTTGATTCATAAAGAAAATGAAGGCTTTAGATGTGAAACCCTCGTTTTCTCTTGTCCTTCTCTTAGGTGA-AAGATTTTATTTTTTTCAAAAGGCTACATACTGGTATCCCAGCAGGTGTAGTGTGAGAACTGGCATATGTTAGGCTATGGTTTCAGTGTGGATGGGCAATTCTTCAAGATGGAAAACCAAGTCTCACTGAGGTGCTGGAGCCACACTGACCCTTCTCCACATCCCCCACCATGGGCTTTC----ACTTTTATTCTGTGCTTGAATTTTTTTCACATACAAATTCTTTATacacacac s panTro1.chrUn_random 177521209 316 - 240967748 TCAAATGACAAGTGGCTGTTGATTCATAAAGAAAATGAAGCCTTTAGATGTGAAACCCTCGTTTTCTCTTGTCCTTCTCTTAGGTGA-AAGATTTTATTTTTTTCAAAAGGCTACATACTGGTATCCCAGCAGGTGGAATGTGAGAACGGGCATTTGTTAGGCTATGGTTTCAATGTGGATGGGCAATTCTTCAAGATGGAAAACCAAGTCTCACTGAGTTGCTGCAGCCAAAGTCACCTTTCTCCACATCCCCCACCATGGGCTTTC----ACTTTTCTCCTGTGCTTGAATTTTTTTCACATACAAATTGTTTATACAC---- s canFam1.chr9 14302365 294 - 53642819 CCAAATGATAAGGGACTGTTGTTTA--AAGGGAACAAAAGGTTCTAAGTGTGAAATCCACTCTTT---------TCCTCTTAGTTGACAAAATGCCATTTTTAAAATAAGGTGAC-TAGTGGTATCCAGGAAGGGTTGGTGTGGGAGCCAGCA--TGTTAGGTTATGGTCT--GTGTTGATGGGCACCTGTTGAAGAC-TAACATTAAGT----CTAAATTGTGTGAGCCACACCCACCCGT-TTCATGTACCCCATGCTAGTCTTTCCAAAACTCTTC-----TGTTTGGATTTAACATGCATGTTACTTTTATAAATAC---- a score=31133.0 s hg17.chr7_random 297559 407 + 778964 acagacacacacacacaTAtctcactctgtcaatgcagtggctgaatcatgggtcactgcatcttcaaattcttaggctccagtgatgctttcaaatcag-cctctcaagtagctgggactacaggcatgcaaagctacacccagacaattttttaatttttttctagagactgagcctacttatgttgctcagactcatcttgaactcctgggatcaagcgataatcccaccttggccacct-aaagtg-tttacattacaggtgtgagctagcactctcagcAAAAATATATTTTAAAGAACCGTTACAACCAAATTAtgagttatcattatgccactgccctccagcctgggcaccagaacaagaccttgtatccaaaaactaagcaaaactgaacaagaacaaaaa s panTro1.chrUn_random 177521525 405 - 240967748 ----ACACACACACACACGTCACACTCTGTCagtgcaggggctgaatcttggttcactgcagcctcaaactcttaggctccagtgatgctttcacctcagccctgtcaagtagctgggactacaggcatgcaaagctacgcccagacaatttttaaatatttttctagagactgagcctacttatgttgcccagacacgtcttgaattcctgggatcaagcgatcatcccaccttggccacccaaaagtgttttagattacaggtgtgagctaccactctcagcAAAAATATATTTTAAAGAACCGTTACAACCAAATTAtgagttatgattatgccactgccctccagcctgggcagcagagcaagaccttgtatccaaaaactacgcaaaactaaacaagaac-aaaa a score=89796.0 s hg17.chr7_random 297966 731 + 778964 aaaaaCCT--TATAAATAAATTAAACTTTGAAGATTGTGTCATC------------------TGTGTCCTTCCCTGCCCTCCAAGCTATCAATGTTAAATATAATGGTTATTGAGAAAA---TGGTTAGATATTATTAAGAAATTTCTATATATCCTCCAGCTGAGAATAGGTATTCTGATGTGGCCCAAATATTTTCTCACCGCTACCTTCAGGGTCTCAACTAGCA-------------------AATCAGGACACCTGCAGAGGACAGTTGACCGTTTTCAAATAGAAA--GAGAAATA-CCCCGTTCATGAGAGTAATCCAGTGATTTTCAAAAAGACAAGACACACTGACATCCAGCGCAGTCAGGGCACAATTA-CCTTGGAAAAATCACCTCACACAGAATGGTTGAGGAGACTTTCTAAGGTGAGCAAATTTGGGCAACATAATCCTTTCTTATTTATTTCCAGCCCCCGCTGCCCCCCTGATTCCTAATGGCCACTCCACAGTGTGGTCAGCAGTGGGGTGCAGTGTTGTGAGAGAGGGGCTCAAGGACGGGATGAAGGTCTTTACCGC-GTTACCAAAATGCAGGTTAAAAAGTTGCTAAAAACATGTCT-AAATATTCTAATTCCTACTGTTACATAGCTGCTAAGATGCA-TTATACAACAGA-CCCAGGTAAGGGAAAGAGCATGTGCAT-----TTCAAGTCTCAGCTCACGTCTTA-ATTAGCTGTGATACTCTGGGCATGTGAACCCAAAT-ATACGAGCCTGTTTGCCGGT s panTro1.chrUn_random 177521930 736 - 240967748 aaaaaCCT--CATAAACAAATTAAATTTT-AAGATTATGTCATC------------------TGTGTCCTTCCCTGCCCTCCAAGCTATCACTGTTAAATATAATGGTTATTGAGAAAA---TGGTTAGATATTATTAAGAAATTTCTATATATCCTCCAGCTGAGAATAGGTATTCTGATGTGGCCCAAATATATTCTCACCGCTACCTTCACGGTATCAACTAGCA-------------------AATCAGGACACCTGCAGAGGACAGTTGGCCGTTTTTAAATAGAAA--GAGAAATACCCCCGTTCATGACAGTAATCCAGTGATTTTCAAAAAGACAAGTCAGACTGACATGCAGTGCAGTCAGGCCACAATTACCCTCGGAATAATCACTTCACACAGAATGATTGAGGAGACTTTCTAAGATGAGCAAATTTTGGCAGCGTAATCCTTGCTTATTTATTCCCGGCCCCCGCTGCCTGCCTGATTCCTAATGGCCACCCTACAATGTGGTCAGCAGTGGGATGTAGCATGGTGAGAGAGGGGCTCAGGGATGGGATGAAGGTCTTTCCTGCTATTATCAAAATGCAGGTTAAAAAGTTGTTAAAAAGATGTCCAAAATGTTCTAATTCCTACTCTTAAATAGCTGCTAAGATGCATTTATACAACAGACCCCAGGTAAGGGAAGGAGCATGTGCAT-----ttcaagtctcagctcacgtctta-attagctgtgatactctgggcatgtgaccccaact-atatgagcctgtttGCCTGT s canFam1.chr9 14302665 711 - 53642819 AAAAAGCTAGCATAGCCAAATTAGCTCTG-AAGATTGTATCATCAAGGAAAAAAAGATTTTATGTCTCCACTCATGCCCTGCAAACTGCCTTTGTGA-----AATGGGTATTGAGAGCGCTCTAGTTAGACTGCACCCAGGAA--CCTGTATACCCTGAGGCAGAGAACAAG--------------------GTTATCACATTCCTCCTGCCAGGGTCTAAACTATCAAATCAAGCAAGGCATGTGTAATCAGGACGCCTACAGAGGACAGGTGGCC---CTCAAATGTAAACTGAGAAAAA-CCCCATT----AGGCAAATCCATTGATTAAAAAAAAAAAAAGAGAGA--GAGATGCAGACTAGGCAGGACCGAATTATCCTGAGAACAGTCATTTCACAAAGAATGATTTAGGAGCTTTCCAAAAGT--TCAAGTGTAGGCAGCATAATCCTTGCTGACCCATTCCCAGGCTCCG-------CCCCATTCCTAATGGCCTTCTCACAG---AGTTCCCAGTGTGGTGCAAT---GTGATAGAGGGCCTCCGGGATGGGACGAGGGTCATTCCTGC-ATGGCTAA-----AGGTTAAACTG-------AAAGAGGTCA-GAAGG-------TCCTCCTTACACTTAGCTAACAAGATGCC-TAACA-GGCAGA-ACCAGGTAAGGGAAAGAGCCTGCGCATTTGGGTTGGAGTCCCAGCTCCCCTTCTAGATTAGTATTAATACCCTTGGCCTAAGACCTTGCCTCAAGTGCACCTGTTTTCTTGT a score=216196.0 s hg17.chr7_random 298697 2672 + 778964 CAACccaaaacaatcctaagcaaaagcaacaaagcttgaggcatcctgttaccagacttcaaactatactacaaggctacagtaatcaaaacagcacagtactgataccaaaacagatatatagaccaatggaacagaacagaggcctcagaaataacatcacacatctacaaccatctgatctccgacaaacctgacaaaaacaagcaatggggaaagatttcctacttaccaaatggtgctgaaagaactggctagccacattcagaaaacag-aaactgtaccccttccttacaccttatacaaacattatcttaagatggattaaagtcttaaatgtaaaacaccaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgagcaaagacttcatgaataaaatacaaaaagcaatctcaacaaaagctaaaattgacaaatgagatctaactaaactaacgagcttctgcacagcaaaagaagctatcaccagagtgaccaggcaacctacagagtgaaagaaaatttttgcactctatccatgtgtcagaggtctaatatccagaatctacaaggaacttaaacaaattcacacacacaca-aaaaaaaaaccatcaaaaagtgggcacagaatatgaacagactcttttcaaaagaagatatttggctgggcacggttgatcaagcctgtaatcccagcactttcagccgtggaggcaggtggatcatgaggtcaggtgttcaagacca-gcctgggccacatggcgacaccgcatctctactaaaaacacaaaaaattagtaggatgtgttggcgggtggcctgtaatcccaccttc-tggggagactaaggcaggagaatcacttgaacctgggtggcagatgttgcagtgagccgagatccttccactgcactccagcctgggtgacagagcatgactccatcttaaaaataataataataataataaataaaataaatagaaaaagaagaggaaggagaaggagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaggggacctttatgtggtcaacaaacacaca-----aaaagaaaaaagctcatcatcactggagactagagaaatgcaaatcaaaaccacaatgggataccatctcacaccatgttgaatggcagttattaaaaagttaggaaacaacagatgctggtgaggctgtggaggaatagaaacacttttacactgctggagggagtgtaaattagttcaaccattatggaagacagtgtggtgattcctcaaggatctagaaccagaaataccatttgatccagcaatctcattactgggtatatacccaaaggaatataaatcattctagcataaagacacatgtactcatatgtgtattgcagcactgtttgcaatagcaaagacttggaaccaaccctaatgctcatcattgatagattggaaaaagaaaatgtggcacatctacaccatgaaataataagcagccataaaaagaatgagttcatgtcctttgcagggacgtgaatgaagctggaaaccattaacctcagcaaactaacacgggaacaggaaagcaaacaccatatgctctcactcatatgtgggagttgaaaaatgagaacacatggacaccgggaaccaaagatcacacactggggcctgttaaggggttgaggtcaa-ggggagggagaaaattaggacaaatacctaatgcatgtggggcttaaaccctagatggcaggttgataggtgcagcaaaccaccatggcacatgtaaaactatgtaacaaacctgcactttctgcacatgtattccagaacttaaagaaaaacaaactaacaaaaaTGCACTAAGGCTGAGGGGGAGTGGGGGTAAGGGCAGGAGtcaggctcgggtgggtgcgtcctggagtttta-tccagtcattgacactgatgtgggaaccgcccaatcaggcgcgcggtggcagaggagaggaaaggagggcgtggcttcctgcatttggcgggatctgtgtctctcgctggtgctggcacaagagcttgggatccgtctcctctttcgcctcctgcaccttgggagccccgggctactctctcacag-cccctgttgccctgtgatctgtaggtccttggggacgcatagttaaggtgccaggacatcctggaagctgggaaatggtgagtatacggggtt-cgccatcccgagaggggagaacagactgtgaaaccggcaggaccggcctccccacggttagctccgagtctcccgcagcttggccctcagtcccctgtggctgcaagatggccgctgggccagcagcgagggcccccacgtcccgtccggcccatccggtcctgtccctgggcagcgccctgctctgcgcccacagccatgagtatttcccagattgttcagggaggcctggtgggtcatcagggaaaaaccgcgactgggtgtttgcgtgggaggagctgcggcccgtggggtccccagtctctcttgttaaaaattaacgggaGTCTATGTTAAAAGGTTCATCagtttatctgaacaaagagtgattggtgaaatggaaagcacccagccatgatttctggtccac s panTro1.chrUn_random 177522666 2659 - 240967748 CAACccaaaacaatcctaagcaaaaacaacaaagcttgaggcatcctgctaaccgacttcaaactatactacaaggatgcagtaaccaaaacagcacagtactgataccaaaacagatatatagaccaatggaacagaacagaggcctcagtaataacatcacacatctacaaccatctgatctccgacaaacctgacaaaaacaagcaatggagaaagatttcctacttaacaaatggtgctgaaagaactggctagccacattcagaaaacagaaaactggaccccttccttacactttatacaaacattttctcaagatggattgaagtcttaaatataaaacgccaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgagcaaagacttcagaaataaaataccaaaagcaatcacaacaaaagctaaaattgacaaatgagatctaattaaactaacaagcttctgcacagcaaaagaatctatcatcagagtgaccaggcaaagtacagaatgacagaaaatttttgcaatctatccatgtgtcagaagtctaatatccagaatctacaaggaactt----aaattcacacacacacacaagaaaaaaacatcaaaacgtgagtaaagaatatgaacagactattctcaaaagaagacatttggctgagcgtggttgatcaagcctgtaatcccagcactttcagccgtggaggcaggtggatcatgaggtcaggtgttcaagactaggcctgggcaacatggtgaaaccatgtctctactaaaaacacaaaaaattagcatggtgttttggcgggtgg-ctgcgattccagcttcttgggggga-taaggcaggagaatcactttaacctgggtgggagatgttgcagtgagctgaggtcctgccactgcactccagcctgggtgacagagcaagactccgtcttaaa---------aataataataaataaaataaaT--Gagaagaaaagga---agaaggagaagaagaagaagaggaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa---gacatttatgtggtcaacaaacacacaaaaggaaaagaaaaaagctcatcatcacttatgattagagaaatgcaaatcaaaaccacaatgggataccatctcacaccatttggaatggcagttattaaaatgtcagg-aacaacagatgctggtgaggctgtggagaaatagaaacgcttttacactgctggagggggtgtaaataagttcaaccattatggaagacagtgtggtgattccccaagtatctagaaccagaaataccatttgacccagcaatctcattactgggtatatacccaaaggaatataaatcattctagcataaagacacatgcactcatatatctattgcagcactgtttacaaaaacaaagacttggaaccaa-cctaatgcccatcattgatagactggaaaaagaaaatgtggcacatatacaccatgaaataatattcagccataaaaagaatgagttcatgtcctttgcagggacgtgaatgatgctggaaaccattctcctcagcaaactaaaacgggaacaggaaacaaaacaccatatgttctcactcatatgtgggagttgaacaatgagaacacatggacaccgggaacaaaacatcacacactggggcctgttagggtgttgagatcaagggggagggagaaaattaggacaaatacctaatgcatatggggcttaaatcctagacgtcaggttgatagaagcagcaaaccaccatggcacatgtaaaactatgtaacaaacctgcacgttctgcacatgtattccagaacttaaagtaaaacaaactaacaaaaaTGCACTAAGGCTGAAGGGGAGTGGGGGTAGGGGCAGGAGTCAGGCGGGGATgggtgagtcctggagttttagtccagtcattgacactgatgtgggaaccgcccaatcaggcgctcagttggagaggacaggagaggagggcgtggcttccggcgtttggcgggatctttgtctcttcctggcgttggcacaggaacttgggatccgtctcctctttcgcctcctccactttgggagccccgggctactctttcacagccccctgttgccctgtgatctgtacgtccttggggacgcacagttaagatgccaggacatcctggaagctgggaaatggtgagtatacggggttacgccatcccgagaggggagagcaggctgtgaaaccggcaggaccggcctccccacggttagctccgagtctcccgcagcttggccctcagtcccctgtggctgcaagatggccgctgggccagccccga-ggcacccacgtcccgcccggcccatccggtcctgtccctgggcagcgccctgctctgcgcccacagccatgggtatttcccagattgttcagggaggcctggtgggtcatcagggaaaaactgccactgggtgtttgcgtgggaggagctgcggcccgtggggtccccagtctctcttgttaaaaattaaggggagtctatgttaaaacgttaaccagtttatctgaacaaacagtgattggtgaaatggaaagcacccagccatgatttctggtccac a score=22094.0 s hg17.chr7_random 301369 311 + 778964 cagaggggcataaaggaaaggcttttataagatgcatgagaaag-----caacccaaattcaagaattggttccagttatatggtagccttatttg--aactatccagatggaaatgtcctggttacatattcagaggttaattgcatgtttgtcatgggttaaacctgcattttgcttcaggctaagatagtgttttataggaaatatatttgagttaggttttagatttttttttgtttgttttttgcttttt----------------------acctatgaacacagggcactagagccactttagactaattttctgatctttaattattttaac s panTro1.chrUn_random 63592806 333 + 240967748 cagaggggc-taaaggaaaggcttttataagatgcatgagaaagtcctccag------ttcaagaattggttccagttatatggtagccttacctgttaactatccagatgggaatgtcctggttacatattcagaggttaattgcatgtttgtcatgggttaaacctgcattttgcttcagtctaagatagtgttttataggaaatgtatttgagttaggttttagatttttttttttttttttttttttttttttttttttttttttttttttttACCCAAAAACACAGGGCACTAAAGCCCCTTTAAACAAATTTTCCGCCCTTTAATTATGTTAAC a score=24137.0 s hg17.chr7_random 301680 214 + 778964 aCTCCAGAGGAGGACTGGTTTTCTCCTGTGTTTTTTTAATGTATGGCAAGTGGAACCTCTAATCGACCACCCTGTTT-----TTCATCCTAACTCAGGCTTGCAGTAAAATTATCAGTTCCCACTTTCTTTGCTGCATTCTCAAATGCAACACATGAGACCAGCTTTCCCTTGCCAATTTA---CAATGCTGTTAACTATATGTCCTTTATTATACATTTCa s panTro1.chrUn_random 63593139 214 + 240967748 CCCCCAAAGGAGGACGGGTTTTCCCCCGGGTTTTTTTAAGGGAGGGGAATTGGAACCCCTAATCCACCCCCCTGTTT-----TTCATCCCAACTCAGGGTTGGAGAAAAATTATCAGTTCCCACTTTTTTTGCTGCATTCCCAAAGGCAACGTATGAAACCCGCTTTCCCTTGCCAATTTA---CAATGCTGTTAACTATATGTCCTTTATTATACATTTCa s canFam1.chr20 52428267 210 + 61172541 ACTCCCAAGGGGCACCTGTTTTCTCCTGAGTGTTCCAGATGTTTGGAAAACTGAGCCTCAAATCCACGACCCTGTCCCCAAGCCTATCCTTTCCTGGGACTGGCAATAAATGCTTGTTTCCAGATCCCGCCCCCGCGTCCCCAGACG------------CCAGCTTCCCCTGTCCAGTTCAGAGCATCAGTATCAGCTGTTTGTCCTCCGTGGTGCATTTCA a score=63331.0 s hg17.chr7_random 301894 725 + 778964 ttaaagttttctattatttggtttctttctacttctccctacagttctggcaatatttgctttttatatttagaagcctcccttttgggtgcataaatatataaagctatattctcttgagaaattaacctctattattattgtatggtaaactcatttcatgcttgtgagagacattgctagaaagtctattttgtctaatttaagcattaccgttgcactcctttggttattgtttgcatggaatatcattttctatcctttcacttttagcctatgctcttaattcataattgagtctcttgtaagcagcatattACGAGGTTTAAAAGATTAATTTATCCACTCTGTCtgctttagtctcttttggctgctataactgaatatcacacactggtaattaataaagaatcgaattttatttgacttatgattctggaggctgggaagccaaaacaacatgatactggtatatgttgaaggtctagttgctggataataacatagacaaagatgtgagggagagagagcttttttttttt----aatatataacagatccattcttgttaaaattagcccattcccataataagaacattaatccattcatgagggcagagttcttagagcttaattaatttttaaaggttccacctcttaattctaacatgttggctattaaattttatcctaaattttggagatgacattcaGTGTACAGCAGTA s panTro1.chrUn_random 63593353 725 + 240967748 ttaaagttttctattattgggtttctttctactcctccctacagttctggcaatatttgctttttatatttagaagcctcccttttgggtgcataaatatataaagctatattctcttgagaaattaacctctattattattgtatggtaaactcatttcatgcttgtgagagacattgctagaaagtctattttgtct----taagcattaccattgcacccctttggttattatttgcatggaatatcattttctatcctttcacttttagcctatggtcttaattcataattgagtctcctataagcagcatattacgaggtttaaaagattaatttatccactctgtctgctttagtctcttttggctgctataacagaatatcacacactggtaattaataaagaacagaattttatttgactcatgattctggaggctgggaaggtaaaacaacatgatactggtatatgttgaaggtctagttgctggataataacatagacaaagatgtgagggagagagagctttttttttttttttaatatataacagatccattcttgttataattagcccattcccataataagaacattaatccattcatgagggcagagttcttatagcttaattaatttttaaaggtcccatctcttaattctaacatgttggctatgaaattttatcctaaattttggagatgacattcagtctacagcagta a score=16829.0 s hg17.chr7_random 302619 140 + 778964 TCTGTTTAGTAGATACTTTAATCTTTTTATTTGTAAGGTAGTGATAGGTAAGGAGTTACTATTGTAAATTTG----TAGTTTTCTGTCCATTTTAAGTTTGCTTCTTTTTTTTCTGGTTCTGTCTTTCCTGTGGTATTGTTCAt s panTro1.chrUn_random 63594078 140 + 240967748 tctgtttagtagataatttaatgtttttatttgtaaggtagtgataggtaagcagttactattgtaAATTTG----TAGTTTTCTGTCCATTTTAGGTTTGCTTCTTTTTTTTCTGGTTCTGTCTTTCCTGTGGTATTGTTCAt s danRer1.chrNA 190579903 120 + 390413307 TCTGTTCATT---TACTTTCATTATTTT----------TATTGATAAATAATGACTTACTATTGTCATTTTGTTATTGGTTTTCTGGTC---------TTCCCTTCCTTCCTACTG--TCTTTCTTTTTTGTTTTCCTTTTCAA a score=19504.0 s hg17.chr7_random 302759 217 + 778964 ttttgttgagacaaagttatgctttcttgctcagactgaagtgtagtggcatatcacagctcactgtagcttcaacctcctgggctcaaataatcctcccaccttagccacccaagtagcttggactacagacacgtaccgcaacacccaaggagatttcatccttccaccttggcctcccaaagtgttggaattataag-caggagacaccatatcc s panTro1.chrUn_random 63594218 218 + 240967748 ttttgttgagacaaagttatgctttcttgctcagactgaagtgcagtggcatatcacagctcactgtagcctcaacctcctgggctcaaataatcctcccaccttagccacccaagtagcttggactacagacacgtaccacaacacccaaggagatttgattcttccaccttggcctcccaaagtgttggaattataagtcaggagacaccatatcc a score=1430.0 s hg17.chr7_random 302976 24 + 778964 AATGTGTAATTTTTGTTGTTTGTG--- s panTro1.chrUn_random 63594436 24 + 240967748 AATGTGTAATTTTTGTTGTTTGTG--- s danRer1.chrNA 190580023 21 + 390413307 ---AAGTGATTT---TCTATTGTGATA a score=23747.0 s hg17.chr7_random 303000 220 + 778964 TATGCTTTAATTACTTTCTCTT--TTTCTT---------TACTGCAGTTTTTTTTT------CCTAGTGGTTATCATGAGACTTAGGTAAAACATCTTG-TATTTTAATAGTCTAGTTTAAGATGATAACAATTTA-------TAGTATTCT-------------------------------GAAATTCAGTATGTATTTAC------------CATTTT-AGTGACAT-----TTATACTTTAGTATTTTTCATATTGTTAGTTAGCATTTCATCATATCA-------ATG--TGAAGATT s panTro1.chrUn_random 63594460 228 + 240967748 TATGCTTTAATTACTTTCTCTT--TTTCTT---------TACTACTGTTTTTTTTTTTTTTTCCTAGTGGTTATCATGAGACTTAGGTAAAACATCTTGATATTTTAATAGTCTAGTTTAAGAGGATAACAATTTA-------GAGTATTCT-------------------------------GAATTTCAGTATGTATTTAC------------CATTTTTAGTGACAT-----TTATACTTTAATATTTTTCATACTGTTAGTTAGCATTTCATCATATCA-------GTG--TGAAGATT s canFam1.chrX 103762000 249 - 126913094 TATGCATTGCCTTCTAATTCAT--GTTCTTTGGTGTAAGTGCTACAGGTTTTTCTT------CTTA--GGTTATCAGGAGAATTACATAAAATACTTTA-AAGTTTAACATCTTAATTTAAGCTGATAACAACTTAATTTCAGTAGAATTCC-------------------------------TAAACTT--CACACTTTTACTTCTCCTACTCACATTTT-AG-GATATTGCTGTTATAACTTA-CATATTTGTTACTGTTTAATAACCTTTTATTATAGTC-------ATGGTTAAAAATT s danRer1.chrNA 190580044 256 + 390413307 TGTTTTTAAATTCCTTTCTTTTTGTTTATC---------TGTTGTGGGTTTTTGAT------TTGA--GATTACCATGTGTCTTTCAAATAACACCTTG-GAACCCA-----TTAGTTTAAACTGATGACAATTTAA------CAATATTCCAAAAAGAAACAAACTAACAAACAAGCAAAGAGAAAACTAATAAAGACTCTA------------AATTTT-AGCTTTAC--CTCCCACATATTCACATTTTTGTTGTT-TCTATTTTTATTTTATTATACTATGCAAGTCTA--GAAAAGTT a score=709.0 s hg17.chr7_random 303220 4 + 778964 TCTt s panTro1.chrUn_random 63594688 4 + 240967748 TCTt s danRer1.chrNA 190580300 4 + 390413307 TCTG a score=36266.0 s hg17.chr7_random 303224 401 + 778964 ccagaccatggctggagaaggaaagaaggtgtgttttgcctgactcagtgactatagagagaaccaagttctgcaggcctgtcacctaagtctcaggtgagtatgaattctcttgtgtttttcacagattgttgcagtggcaggaccaaggtcaaatgagttatagccaagtctacagtaagatgtggcagtattctgttttgaagccgggaccatgattggcaagcttgccacttggtcaagtgctcaccctctgaaaatgtcttccttggtctttgcctccagctgggtgccacaaactctgaactggatttcaaggctttcatgaatgcacttacgtttgctgtggcagctgcattatgtcgtgggggatgtggatgcagaacctcacattctgtcgt s panTro1.chrUn_random 63594692 401 + 240967748 ccagcccatggctggagaaggaaagaaggtgtgttttgcctgattcaggggctatagagagaaccaagttctgcaggcctgtcacctaagtctcaggtgagtatgaattctcttgtgtttttggcagattgttgcagtgtcaggaccaaggtcaaatgagttatagccaagtctacagtaagatgtggcagtattctgttttgaagccgggaccatgattggcaagcttgccacttggtaaagtgctcaccctctgaagatgtcttccttggtctttgtctccagctgggtgtcacaaactctgaactggattccaaggctttcatgaatgcacttacgtttgctgtggcagctgcattatgtcgtgggggatgtggatgcagaacctcacattctgtcgt a score=75027.0 s hg17.chr7_random 303625 603 + 778964 cttgcttatgttactcTCCTTTATG-TTTCACTTTCTCA---AATGAATGTCAA----GCAGGTGATTTTCAGATTCAAAAGTTCTAAAA-TAAATTGCTCAAATTTATACA-TTATGTAA-GCTGTTAATAAAATTTCTT-GTAGGTGCTACATATTTGTTAAAATTTTTGGTT-GTAATTTTAAGCTCACTGTAGGCAGAAAGGAATCATTAAG-ATTTCTATTC---TTTTTTAGTCTGTATCTAAATGACCATATATTTTAATTCCAAATATTTACTTTATACTTCAGTAATGCTCATTGTATTTTGCAAAATTTATATTGTTCTTTTATTTGAAAATATAAGGCTTTTT-------------------------------------------------------------------------------------TT---AGCTCCTGAAAGCTATATTATAGTCATATAGTTTTATTATAGTATTTGATAAGAAGAGCAGCAACATATTGAGAACAGA-TAAAAT--TCTGCTGTCTTTTTAATGATTATTTATTAAATTCTTCTCATTAGAGCCTATTATTAATGATTGTAATGTATTTACTGTATAATTTTTCTGCAAT-TTATTAAATGCCAATGACTTCCAATGTCTGCTTTTCATGACTGCACACAGTTTAAAGCTGTAGATATCTAAAGGGTTATTTTTCa s panTro1.chrUn_random 63595093 610 + 240967748 cttgcttatgttactcTCCTTTATG-TTTCACTTTCTCA---AATGAATGTCAA----GCAGGTGATTTTCAGATTCAAAAGTTCTAAAAATAAATTGCTCAAATTTACACA-TTATGTAAAGCTGTTAATAAAATTTCTT-GTAGGTGCTACATATTTATTAAAATTTTTGGTT-GTAATTTTAAGCTCACTGTAGGCAGAAAGGAATCATTAAGCATTTCTATTC---TTTTTTAGTCTGTATCTAAATGACCGTATATTTTAATTCCAAGTATTTACTTTATACTTCAGTAATGCTCATTGTATTTTGCAAAATTTATATTGTTCTTTTATTTGAAAATATAAGGCTTTTT-------------------------------------------------------------------------------------TTTTTAGCTCCTGAAAGCTATATTATAGTCATATAGTTTTATTATAGTATTTGATAAGAAGAGCAGCAACATATTGAGAACAGAATAAAAT--TCTGCTGTCTTTTTAATGATTATTTATTAAATTCTTCTCATTAGAGCCTATTATTAATGATTGTAATGTATTTTCTGTATAATTTTACTGCAAT-TTATTAAATGCCAATGACTTCCAATGTCTGCTTTTCATGACTGCACACAGTTTAAAGCTGTAGATATCTAAAGGGTTATTTTTCA s canFam1.chr5 65391066 675 + 92064832 CtttctttttttttttttttttttgttttCACTTTCTGATTGAACTTATGTGAAATTCGTCTATGATTTT-AGATCCAAAAGTTCTGATA-GAATGTGCTGGAATGTACACATTTTTATAA----GTGAGCCAGGGTACTTAGTAGGCACTTCATATTTATTAAAATGTTTGGTTCATAAATATAGGTTTACTTCAGACAAAAAGTAATTATTGGA-ATTATCATCCACTTTCTTCGAAATGTATCTGAACCGTGGTGTAACTTAATCTCAAATG-----TTTATGTATCAGCGATTCTCAGCATATTTTACAACTTTCATGGTATTCCTTTATTCAGAATGAAGAGGTTTTTTTGTTTGTTTAGtctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttctcttttttATTTTTTGCATCTAAGGGATGGATTACAGTC-------TTTA-CATTCTGTGTAAGAGTAGGAGCAATATTATATTAATAACATAATGAATTTCTCTAATGTAATTTAAATGCTTATTCATTAAACT----TCATTAGAGCTT-TTATGATTGAGTGTAATGAATTTTCTGCCCAGTTTTACTGCCACATAAACACATGCCAAT-ATTCAAAACACTTGCTTTTCATGG--GCACACAGTCATAATTTA---------AAATAGTAGTTTTATA a score=25299.0 s hg17.chr7_random 304228 293 + 778964 gccc-ggcatggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcacgaggtcaggagatcaagaccatcctggctaccacggtgaaaccccgtctctactaaatatagaaaaaattagccgggcatagtggtgggtgcctgtattcccagctactcgagaggctgaggcaggagaatggcgtgaacccagtaggcggagcttgcagtgagccgagatggcaccactgcactccagcctgggcgacagggtgagact--gtctcaaaaaaaaacaaaaa s panTro1.chrUn_random 63595703 294 + 240967748 GCcccggcacggtggctcatgcctgtaatcccagcactttgggaggccaaggtgggtggatcacgaagtcaggagatcaagaccatcctgggtaacacggtgaaaccccgtctctactaaatatagaaaaaattagccgggcatagtggcgggtgcctgtattcccagctactcgagaggctgaggcaggagaatggcgtgaacccagtgggcggagcttgcagtgagccgagatggcaccactgcactccagcctgggcgacagggtgagactctgtcacaaaaaaaaa--aaaa a score=1139.0 s hg17.chr7_random 304521 16 + 778964 GGGCTTATTT--TTCATT s panTro1.chrUn_random 63595997 16 + 240967748 GGGCTTATTT--TTCATT s canFam1.chr5 65391741 18 + 92064832 GGATCTCTTTGATACTTG a score=27698.0 s hg17.chr7_random 304537 302 + 778964 GTATATTTATG------------TTGTATTCAGGATTTT--ATGCATTAAAATCTCTC---TTCTTATTTT-CAGTTCTGTGTTGTTGTGTTTCTTTTCTGGGGGGGTATGTTTTCTCAGAGCAGTTAATTGT--ATTTTTGCTTTTAAAGCTTGATATCATG-AGTTGAATGATAATTTTTTAACTCGGTACACATTATGA---------CAATGTGATATTT-AATTTAT-ATTTGAATTAGCTG--TGTTTGTTGCTTATAGATATATCTATGTGTTTTTC--ACCTAT---GTAAGT--ATGTCA------TTTTTTTCATCTTTTTTCCTTGTTTTTTTTTTTT s panTro1.chrUn_random 63596013 314 + 240967748 GTATATTTATGGTATATTTATGCTTGTATTCAGGATTTT--ATGCATTAAAATCTCTC---TTTTTATTTT-CAATTCTGTGTTGTTGTGTTTCTTTTCTGGGGGGGTATGTTTTCTCAGATCAGTTAATTGT--ATTTTTGCTTTTAAAGCTTGATATCATG-AGTTGAATGATAATTTTTTAACTCGGTACACTTTATGA---------CAATGTGATATTT-AATTTAT-ATGTGAATTAGCCA--TGTTTGTTGCTTATAGATATATCTATGTGTTTTTC--ACCTAT---GTAAGT--ATGTCA------tttttttcatcttttttccttgtttttttttttt s canFam1.chr5 65391759 309 + 92064832 ATACATCTGTG------------TTTTATTTAGAATTTT--GGGGGTTAAATTTTCCCTTATTCTTGTTTTGCAATTCCATAACAATATACTTGTCTTTT--AATAGTAGCTTCCACAACATTGGTTAATTGT--GGTTTTGTCTTTTAC-CTATGTACTATGTTTTTTTATGAC-ATTTTCCAACTCAATGCATTTTAAGA---------CAAAATGGGGTTT-AATTCAA-GTATGAATCAGCCGTATGTCTATTTTCAGTAAAGttatatatatattt-----atctat---ataaataaatGTTACCCATGCTTTGTTCAT-GACTTACCTTGTTCGTTTCTTTT s danRer1.chrNA 190580941 294 + 390413307 TTAGATTTGCC------------CTGTGGAAAGCATTTTCCATATATTGCAGCCAAGCT--TTATTCTTTT-CTACTCTTT----TAGTTTTTCTCTCCTCTGACAGTGTATTTTC---AAGTAGCCTGTCTTCAAGTTCCTTTTTTTATGCTTGGTC------------------ATTTCT--ACTTTTCGGAGACTATGATGTATTCTTCAGTGTGTCATTTGAATTTATCATTTCCAAAATTTC--TGCTTCATTCTCTTAATTATTTCAAAGTCTTTGTTAAACTTATCTGATAGAA--ATCTGA------ATTTCTTCTCTGTGTTATCTTGAATTTATTT--- a score=1721.0 s hg17.chr7_random 304839 7 + 778964 AAGTTTC s panTro1.chrUn_random 63596330 7 + 240967748 AAGTTTC s danRer1.chrNA 190581235 7 + 390413307 GAGTTTC a score=373.0 s hg17.chr7_random 304846 4 + 778964 AGAT s panTro1.chrUn_random 63596337 4 + 240967748 AGAT a score=4155.0 s hg17.chr7_random 304850 27 + 778964 ATGCtttctttttcttttttttgtttt s panTro1.chrUn_random 63596341 27 + 240967748 ACGCtttctttttctttttttttttgt s rn3.chrX 26411610 27 + 160775580 ATGTTCTTCTTGGCTATTTTTTTTTTT a score=-169.0 s hg17.chr7_random 304877 6 + 778964 tttttt- s panTro1.chrUn_random 63596368 6 + 240967748 tttttt- s rn3.chrX 26411637 6 + 160775580 TTTTGG- s canFam1.chr10 4943303 6 + 72717409 -TCTGTG a score=245991.0 s hg17.chr7_random 304883 749 + 778964 tttttAAAGAGAATTTTAAAACAGAGTCAAATGAACAAAAATCAGTTATTTGTCCTCTTGCAGGGCGGG--GAGACCTTCCTTCCCCACGGG-TTTGAGGCTATGGCTAAGTGGTGA--------------GCCTTGGTG------AGACGCAGA-AAGGATCCATCCCAGGCACT-TGGCTAGAGGTAAGTAAAAATAGCCTTTGGGCCAGAAGACCTGATAGTT-TGGGTACTC----GTCTGGACATAAGTCCCCATCTTCCCAGAAATGTCGTCTTTTGTCTGCAACAACTGGCTGGAGAAATA---TTTCAGAAAGATGTGTGCCTGGAACACCCAAAG---GCAT---ACCTTTCCTTTCTCCTTGGCATAGGCCTTGCAGCACTGAAGAAAGACCA-GG-TTT-GCAACGGAGCCTTCAATACTCTTCATCCCTATGGATCTCAGGGGCTCATAGGGTGACAGGAGAGGAGACAAGCTAGCTTGGGAAGAGTCTTTGTCCTTCAGCTTCT--CCTCTACTGAAACACTATATA-CTTGGGG-CCACAGTTCATAACAAAACACACATGCT--------GTCTTTCTTTCTCTCACACCCCCAT-----CTCGGGAACCCAACAACTTGATGGCAGGTAGCTCTGGGTATCCTTGGTCTGGCATTCACCCACTGGGCATCTAAGCTGTCCTAAAGCTCTTTTCAATCAC-TTCTCACTGTTTCCAGGCCCATGTGGGTAGGTGTTCCAGCCTTCACTCTTTCAGGCTGTTCATAAAGGCACAGTGTGGGAAAATCCCCTACTG s panTro1.chrUn_random 63596374 754 + 240967748 cttttAAAGAGAATTTTAAAACAGAGTCAAATGAACAAAAATCAGTTATTTGTCCTCTTGCAGGGCGGG-AGAGACCTTCCTTCCCCACGGGGTTTGAGGCTATGGCTAAGTGGTGA--------------GCCTTGGGG------AGATGCAGA-AAGGATCCATCCCAGGCACT-TGGCTAGAGGTAAGTAAAAATAGCCTTTGGGCCAGAAGACCTGATAGTT-TGGGTACTC----GTCTGAACATAAGTCCCCATCTTCCCAGAAATGTCGTCTTTTGTCTGCAACAACTGGCTGGAGAAATA---TTTCAGAAAGATGTGTGCCTGGAACACCCAAAG---GCGT---ACCTTTCCTTTCTCCTTGGCATAGGCCTTGCAGCACTGAAGAAAGACCA-GG-TTTTGCAACGGAGCCTTCAATACTCTTCATCCCTATGGATCTCAGGGGCTCATAGGGTGACAGGAGAGGAGACAAGCTAGCTTGGGAAGAGTCTTTGTCCTTCAGCTTCT--CCCCAACTGAAACACTATATATCTTGGGGGCCACAGTTCATAGCAAAACACACATGCT--------CTCTTTCTTTCTCTCACACTCACAT-----CTCGGGAACCCAACAACTTGATGGCAGGTAGCTCTGGGTATCCTTGGTCTGGCATTCACCCACTGGGCATCTAAGCTGTCCTAAAGCTCTTTTCAATCAC-TTCTCACTCTTTCCAGGCCCATGTGGGTAGGTGTTCCAGGCTTCACTCTTTCAGGCTGATCATAAAGGAACAGTGCGGGAAAATCCCCTACTG s mm5.chr10 114834 703 - 130633972 TTTAGAAAGAGATTTTTA----AGAGTTAAAAGAACAGAAATCAGCTATATGTCCTCCTCCAGGGCAGAGAGAAGACCTCCTTTCCCATGGG-AGTAGGACTATGGCTTGGGAGTGA--GAGGCTGGCCTGGCACTGGAGCCC---GGGTACAGAGAAGTGCCCATGGCAGGCATTCTTGCTGGAGCCAGGT----GTAGCCCATAGGACACAGAACCTGGTGG----------------GTCTGCGAACATGCTCTCATATTCCCAAACA----------TGTCTGCAGCTGCTGGCTAGGTTTCTGTGTTTTCTGAAAGATGTGTGTCTGG-GCATCCAAAG-CAGCCTCCGGCCTCTCCCTTCTCCTTGGCACAGGTCTTG--ATGCTGAGGGAAAGCCATGG-TTTGGCGAGGGAGCCTACAATAGTTTTCATGGCTGTAAAGCTCAGTAGCTCACAGCATAGCAGGAAAGAAGACAAA-TGACTTGGGTTGAGTCCTTATCTTTCAGCTTCTC-CCCCTACTGCACAACTGGGCA-CCCAGGA-CCATAGTTTACCG-GACGGGCACATGCA--------CGCACACACACCCACACAACCACCT--------GGGAACTGAGCA--CGGGGTGCAGAGAGCTCTGGGT---CTTGGTCTGA---TTTCCTGCTCTGCGTGTGACCT--------GCTTTTGTCCCACACGCCCTGGCTACTTGCAGACCC-TGTCAGTG-----------------------AGGCTGACCACAAAGGCACAGTGTAGCAGAGTCCCCTGTTG s rn3.chrX 26411660 693 + 160775580 TTTATAAAGAGAACTTTA----AGAGTTAAAAGAACAGAAATCAGC----TGTCCTCTCCTAGGACAGAGAGAAGACCTCCTTTCCCATGGG-AGTAAGACTATGGCTTGGGAGTGA-GGAGGCTGGCCTGGTACTGGAGCCT---GGAGACAGAGAAGCA------------ATT-CTGCTGGAGTCAGGT----GCAGTCCATAGGACACAGGACCTGGTGG----------------GTCTGTGAACATGTCCTCATCTTCCCAAA------------CGTCTGCAGCTGCTGGCTAGA---------TTTCT---AGGTGTGTGGCTGG-GCATCTGAAAGCAGCCTCTGGCCTCTCCCTTCTCCTTGGCACAGGCCTGGTGATGTTGAGGAAAGGCCATGG-TTTGGCAGGGGAGTCTACAACAGTTGCC-TGGCTGTGACACTTAGCAGCTCCCAGGGCAGCAGGAAAAGAGACAAG-AGACTTGGGTCAAGTCTTGATCTTTCAGTTTCGC-CCCCTACTG-GCCACTGGGCA-CCGTGGA-CCATAGTTTACTG-GACGGGCACATGCACATGCATGCGCACACACAAACACACACCCACACGCACACTTGGGA----GACA--CAGGGTTCAGAGAGCTCTGGGT---CTCAGTCTGA---TTTCCTGCTCTGCATGTGACCTGCCATACAGCTCTTGTCTAGCATGCCCTGGGTACTTGCAGACCC-TGACAGTC-----------------------AGGTTGATCACAAAGGCACAGTGTAGCA-AATCCCCTGTTG s canFam1.chr10 4943309 757 + 72717409 TTTAGAAAGAGAATTTTAAA--AGAGTCTAAAGAACGGAAA--AGTTACTTGTCCTCCTCCAGGGCGGGGAGAAGACCTCCTTCCCCACAGG-TTCGAGGCTATGGCTAGGTGATGAGGAAGGCAGGCCCGGCGCCCACACCTCGGGGAGACAGA-GAGGGCCCATGCCAGGCACT-CGGCTGGAGGCAGGT---------------------GGACCTGATGGCTGCAGGCGCCACTGGTTCTGGAAACAAGCTTTCATCTTTCCAGACGTGTTGTCTTCTGTCTGCGGTAGCTGGCTGGAGAAAGG---TTTCAGAAAGGCGTGTGCGTGGGACACCGGAAGGCAGCCTCTGATTCACCCTTTCTCCTTGGCATGAGCCTTCCGACACCGAGGAAAGGCCATGGCTTTGGCATCAGAGCCTTCAACAGTCCTC-TCTGGATCGAGCTCAGGGGCTCTCAGGGTGACTGGAGAGGAGACACGCTAATTTGGG--GAGTCTCCATCTTTCAGTTTCTCTCTCCACCTGAGACACTTCTAT-CGTGGGG-CCACCACTCAGGGTGAGacacacagacacacacagtcacacggacacacacacactcacaT------TTGGGAACCCAACT--CAGGATCAGACAAGCTGTGGGT---CTGGGTCTGACACGTGCCCACCTCGCATCTATCCCGTCCTAAAGCCCTGTGCGGCCAC-TTC----TACCCCCAGGCCCCGTTGGGTGAGAGGCTCAGCTTCTGCTCCGTCAGGCTGGTCATAAAGGCACAGTGTAGGAAGGTCCCCTCCTG a score=15732.0 s hg17.chr7_random 305632 36 + 778964 TGATGGCCATTGCTGGGAAGCAGGG-AAGGTTAAGGG------------- s panTro1.chrUn_random 63597128 36 + 240967748 TGATGGCCATTGCTGGGAAGCAGGG-AAGGTTAAGGG------------- s mm5.chr10 115537 35 - 130633972 GGATGGCCGTTTCTTGG-AGCAGGA-AGGCTAAGGGG------------- s rn3.chrX 26412353 35 + 160775580 GGGTGGCCATTTCTTGG-AGCAGGA-AGGCTAAGGGG------------- s canFam1.chr10 4944066 36 + 72717409 GGATGGCCATCGCTTGG-AGCGGGGAAGGCTAAGGGG------------- s danRer1.chr9 28040182 49 - 28422069 TGGCAGTCAGTGCTACTCAACATGG-AGGTTTAGCGTATGGATTATGGAG a score=85128.0 s hg17.chr7_random 305668 81 + 778964 CCCACTGCTGCCCAAGGCTAGTGTAGACACCCTCTGCTCCTCCACTCATCTCCTCAAATAATGATATCAGGTGCAGCAGCT s panTro1.chrUn_random 63597164 81 + 240967748 CCCATTGCTGCCCAAGGCTAGTGTAGACACCCTCTGCTCCTCCACTCCTCTCCTCAAAGATTGATATCAGGTGCAGCAGCT s mm5.chr10 115572 78 - 130633972 CCCGCAGCTGCCCAAGGCTGGTGTAGACATCATCAG---TTCCACTTAGCTCCTCGAAGACTGGAATCAGGTTCAGCAACT s rn3.chrX 26412388 78 + 160775580 CCCGCAGCTGCCCAAGGCTGGTGTAGACATCATCCG---CTCCACTCAGCTCCTCGAACACTGGAATCAGGTTCAGCAACT s canFam1.chr10 4944102 78 + 72717409 CCCGCAGCTGCCCCAGGCTGGTGTAGACATCCTCTG---CTCCGCTCAACTCCTCAAAGATGGGGATCAGGTTCAGCAGCT s fr1.chrUn 248105842 78 + 349519338 CTCGCAGCTGATCCATTCTGGTGTAGACGTTATCGG---CCCGGCTCAGATCTTCAAATAATGGCAGCAGGTTGAGGAGCT s danRer1.chr9 28040231 78 - 28422069 CCCTGAGTTGTTGGAGTCTGCTGTAGACGTCTTCAG---CTTGGCTTAACTCTTCAAATACTGGGATGAGGTGAAGCAGCT a score=2954.0 s hg17.chr7_random 305749 18 + 778964 GC----TGTCTGGAATGTTATC s panTro1.chrUn_random 63597245 18 + 240967748 GC----TGTCTGGAATGTTATC s mm5.chr10 115650 19 - 130633972 CTG---TATCTGCCATGTCATC s rn3.chr11 79372855 18 + 87800381 --AG--TGTCACTCATGTTATC s canFam1.chr10 4944180 19 + 72717409 ---CCGTGTCTGCCATGTCATC s fr1.chrUn 248105921 18 + 349519338 ----GGAGTCGTCCACATCATC a score=18102.0 s hg17.chr7_random 305767 18 + 778964 AAACCAGGACTGCACAGG s panTro1.chrUn_random 63597263 18 + 240967748 AAACCAGGACTGCACAGG s mm5.chr10 115669 18 - 130633972 AAACCAGGACTGCACAGG s rn3.chr11 79372873 18 + 87800381 AAACCACGAGGCCACTGG s canFam1.chr10 4944199 18 + 72717409 GAACCACGACTGCACGGG s fr1.chrUn 248105939 18 + 349519338 GAACCACGAAACCACAGG s danRer1.chr9 28042290 18 - 28422069 AGAGCAGGAGAGCGAGGG a score=176973.0 s hg17.chr7_random 305785 212 + 778964 -----CACTGCATTCTCTGTGTGGAAGATGTAAGAAGCAGGCGAGTTGTCCAGGATG--AG--TTTTCCTCAGGTCCCTCCCCAGATGGCTGACGTCCTTGACATAGCAGCCCTGGTGAAACAAACATGACTCATGGGACAGGCAGCCCCAGACCATCCC-ATACCCGTCCAGCTCACCCGTCACAGGATCTGCCTACTTGTTCAGGCTGGG--------------------------------------------------------------------AAGA--------------------AGAGAG----- s panTro1.chrUn_random 63597281 213 + 240967748 -----CACTGCATTCTCTGTGTGGAAGATGTAAGAAGCAGGCGAGTTGTCCAGGATG--AG--TTTTCCTCAGGTCCCTCCCCAGATGGCTGACGTCCTTGACATAGCAGCTCTGGTGAAACAAACATGACTCATGGGACAGGCAGCCCCAGACCATCCCCATACCCGTCCAGCTCACCCGTCACAGGATCTGCCTACTTGTTCAGGCTGGG--------------------------------------------------------------------AAGA--------------------AGAGAG----- s mm5.chr10 115687 203 - 130633972 -----CACTGCATTTTCTGGGTGGAAGATGTAAGATGCAGGGGAGTTGTCCAGGATGACAG--TTTTCCTCAGGTCCCTTCCCAGGCGGCTGAGGTCCTTGACATAGCAGCCCTGGTGGAACACACAAGCCTCTCGGAACAGGCGGGCCCGGAACACCCC-GCACCGGTCCAGGAGATCAGTCACAGGGTCAGCATACTTGGCCAAGCTG---------------------------------------------------------------------------------------------------G----- s rn3.chr11 79372891 203 + 87800381 -----AACGGCATTGTCTGGATGAAAGACGTATGAGGCGGGTGAGTTGTCTAAGATT--AGCACCCGCCGCAGGTCTCGGCCCAGCCTGCTCAGGTCTTTTACGTAGTTTCCCTGATGGAAGACACAGGACTCTCAAAACAGCCTGGTACAGAAGGCTCC-CCACTTGTCCAGCAGATCAGCTACAGGGTTTGCGTACTTGGCAAGACGG---------------------------------------------------------------------------------------------------G----- s canFam1.chr10 4944695 214 + 72717409 -----CACTGCATTCTCCGGGTGGAAGATGTAGGAGGCGGGCGAGTTGTCCAGAATG--AGGGTTTTCCTCAGGTCCCTTCCCAGGCGGCTGAGGTCCTTGACGTAGCAGCCCTGGTGGAACACGCAGGACTCCCGGAACAGGCGGGCCCGGAACACCCC-ACACCTGTCCAGCAGGTCGGTCACCGGGTCGGCGTACTGGGAAGAGAGGAG--------------------------------------------------------------------AGGA--------------------GGAGAG----- s fr1.chrUn 248106168 224 + 349519338 -----CACAGCATTGTTGGGGTGGAAGATGTAGGAGGCAGGAGAGTTGTCCAGGATC--AAGGTCTTGTGAAGGTCTCTGCCCAAACGACTTAAGTCCTTCACGTAGCAACCCTGGTGAAAAACGCAGGACTCTCGGAACAATCTAGTCCGAAACACACC-GCACTGGTCCAGGAGGTCCGTCACTGGATCTGCATACTATTGGGGGGTGGGG--------------------------------------GGTGGGGG--------------------TAAGG--------------------AGAAGG----- s danRer1.chr9 28042308 312 - 28422069 CGACCCACAGCGTTCTCAGGGTGGAAGATGTAGGAGGCAGGAGAGTTGTCCAGGATC--AGGGTTTTGTGGAGCTCACGGCCAAGGCGACTCAGGTCTTTCACATAACAGCCTTGATAGAAGACACAAGATTCACGGAAGAGACGCGTCCGAAACACACC-GCACTGATCCAGCAGGTCTGTCACAGGGTCTGCATACTAGCACAGCCGTGGGTTACTACACAACTCTAGAATGCTAGCCAACAAGCATCTAATGAGGGCTTTCTACTCTTATTTTCTACAGGAATGTTATGTTTCCATACCTTAGCAAGGCTAG a score=9484.0 s hg17.chr7_random 305997 6 + 778964 CAATGA s panTro1.chrUn_random 63597494 6 + 240967748 CAATGA s mm5.chr10 115890 6 - 130633972 CAGTGA s rn3.chr11 79373094 6 + 87800381 CAGTGA s canFam1.chr10 4945311 6 + 72717409 CAGTGA s fr1.chrUn 248106392 6 + 349519338 CAGGGA s danRer1.chr9 28042620 6 - 28422069 CAGTGA a score=1433.0 s hg17.chr7_random 306003 5 + 778964 CGAAA s panTro1.chrUn_random 63597500 5 + 240967748 AGAAA s mm5.chr10 115896 5 - 130633972 AGAGA s rn3.chr11 79373100 5 + 87800381 ACAAC s canFam1.chr10 4945317 5 + 72717409 AGAGC s danRer1.chr9 28042626 5 - 28422069 ACAGA a score=80640.0 s hg17.chr7_random 306008 66 + 778964 ACACATTTAAACATTTCCTCCATTCATGTCAGGAACTCATCC-ATATAAGGCCTCATGAGCACATGG s panTro1.chrUn_random 63597505 66 + 240967748 ACACATTTAAACATTTCCTCCATTCATGTCAGGAACTCATCC-ATATAAGGCCGCATGAGCACATGG s mm5.chr10 115901 67 - 130633972 ACACATTCGAAGAGCTCCCCCATCCGTCTCAGGAACTCATCCGACGTAAGGCCTCTTGAGCACATAC s rn3.chr11 79373105 66 + 87800381 ACATACTCAAAGAGCTCGCCCATTCGCTGTAGGAACTCATCT-ACGTGGGGCCGTTTCAGTACATAG s canFam1.chr10 4945322 66 + 72717409 ACACATTCAAAGAGTTCCCCCATCCGTCGCAGGAACTCATCC-ACATAAGGCCTCTTAAGCACATAC s fr1.chrUn 248107012 66 + 349519338 ACACATTCAAACAGCTCTCCCATCCTCTGCAGGAACTCGTCC-ACGTGTGGCCTCTTCAACACATAG s danRer1.chr9 28042631 66 - 28422069 ACACATTCAAACAGTTCCCCCATCCGCTGGAGAAACTCATCC-ACGTACGGCCTCTTCAACACATAC a score=11520.0 s hg17.chr7_random 306074 10 + 778964 ATCTGGTGCA s panTro1.chrUn_random 63597571 10 + 240967748 ATCTGGTGCA s mm5.chr10 115968 10 - 130633972 ACCTGGTGCG s rn3.chr11 79373171 10 + 87800381 ACCTGGTGAA s canFam1.chr10 4947608 10 + 72717409 ACCTGGTGGG s fr1.chrUn 248107392 10 + 349519338 ACCTGGTGCG s danRer1.chr9 28042697 10 - 28422069 ACCTAAAACA a score=755.0 s hg17.chr7_random 306084 1 + 778964 T s panTro1.chrUn_random 63597581 1 + 240967748 T s mm5.chr10 115978 1 - 130633972 T s rn3.chr11 79373181 1 + 87800381 C s canFam1.chr10 4947618 1 + 72717409 T s fr1.chrUn 248107402 1 + 349519338 T a score=62765.0 s hg17.chr7_random 306085 48 + 778964 GGTCCCCTCAAGCTCTACAGGCACTAGGCAGTCAGCATTGCTGATTGG s panTro1.chrUn_random 63597582 48 + 240967748 GGTCCCCCCAAGCTCTACAGGCACTAGGCAGTCAGCATTGCTGATTGA s mm5.chr10 115979 48 - 130633972 GGTCCCCTCAATCTCTACAGGCACTATGAAGTCAGCATTGTTGATCGG s rn3.chr11 79373182 48 + 87800381 CACTCCATCAATCTCCACTGGGATGATGAAGTCAGCGTTGTTTACTGG s canFam1.chr10 4947619 48 + 72717409 GGTCCCCTCAATCTCTACAGGCACTACGAAGTCGGCATTGTTGATTGG s fr1.chrUn 248107403 48 + 349519338 AGTCCCCTCAATTTCCACAGGCACAATAAAGTCGGCGTTGCTGATGGG s danRer1.chr9 28046938 48 - 28422069 GGTCCCCTCAATCTCCACAGGCACAATGAAATCTGCATTGCTTATTGG a score=115424.0 s hg17.chr7_random 306133 88 + 778964 CTTAAAGGAGCTATGCACAAGGGTTTCATCCAGGTCAGTGACCATACAGATCCTTCCTTGATTTTTCTCTGTCACCTCTGGGAGCAGG s panTro1.chrUn_random 63597630 88 + 240967748 CTTAAAGGAGCTATGCACAAGGGTTTCATCCAGGTCAGTGACCATACAGATCCTTCCTTGATTTTTCTCTGTCACCTCTGGGAGCAGG s mm5.chr10 116027 88 - 130633972 CTTAAAGGAACTGTGCACAAGGGTCTCATCCAGGTCAATGACCACGCAGATCCTGCCTTGATCTTGCTCTGTCACCTCGGGGAGCAGG s rn3.chr11 79373230 88 + 87800381 CTTGAAGGAGCTGTGCACCAGGGTCTTGTCCAGGTCGATGACAACGCAGATCTTGTCTGAGTCCTGGGCCTTGACCTCGGGAAGCAGG s canFam1.chr10 4948157 88 + 72717409 CTTAAAGGAGCTATGCACAAGGGTTTCATCCAAGTCAATGACCACGCAGATCCTTCCTTGATCTTCCTCTGTCACCTCTGGGAGCAGG s fr1.chrUn 248108404 88 + 349519338 CTTGAAGGAACTGTGCACCAGCGTCTCATCCAGGTCTATGACCACGCAGATCTTTCCCTGGTCCTGGTCTTCCACGGCAGGCAGGAGG s danRer1.chr9 28047165 88 - 28422069 CTTAAAGGAGCTGTGCACCAGTGTTTCATCCAGATCTATGACCACACAGATCTTCCCCTGGTCGTGAGAGGTCACTGCTGGCAGCAGA a score=10610.0 s hg17.chr7_random 306221 17 + 778964 CAGGTTCCTGGGATCTG s panTro1.chrUn_random 63597718 17 + 240967748 CAGGTTCCTGGGATCTG s mm5.chr10 116115 17 - 130633972 CAGGTCCCAGGGATCTG s canFam1.chr10 4948245 17 + 72717409 CAGGTCCCCGGGATCTG s fr1.chrUn 248108492 17 + 349519338 CAGATTTCATGCTGCTG s danRer1.chr9 28047253 17 - 28422069 CTCTCGCCTGGTATCTG a score=4140.0 s hg17.chr7_random 306238 7 + 778964 ATAAAAC s panTro1.chrUn_random 63597735 7 + 240967748 ATAAAAC s mm5.chr10 116132 7 - 130633972 ATAAAAC s canFam1.chr10 4948676 7 + 72717409 ATAAAAC s fr1.chrUn 248108509 7 + 349519338 TCAGGAC a score=12801.0 s hg17.chr7_random 306245 30 + 778964 TGATATTGGAGACGCTGGAGCTGATCCGAC s panTro1.chrUn_random 63597742 30 + 240967748 TGATAATGGAGACGCTGGAGCTGATCCGAC s mm5.chr10 116139 30 - 130633972 TGGTACTGGAGACACTGGAGCAGATCGGAC s canFam1.chr10 4948683 30 + 72717409 TGGTACTGGAGGCAGTGGAGCAGATCCGAC a score=-155.0 s hg17.chr7_random 306275 1 + 778964 A s panTro1.chrUn_random 63597772 1 + 240967748 A s mm5.chr10 116169 1 - 130633972 T a score=45081.0 s hg17.chr7_random 306276 127 + 778964 TAGCAATGGTGTTGACTCCCTCCTTATGTGTGGATTGCTCAGCGGGGGAACTTGACTGTCCAACATGCTGGGTGCAAGAACAGCAGAAAGGGGACTTTTAAGATGTGGCAAACATGAGGCCTCTTCG s panTro1.chrUn_random 63597773 127 + 240967748 TAGCAATGGTGTTGACTCCCTCCTTATGTGTGGATTGCTCAGCGGGGGAACTTGACTGTCCAACATGCTGGGTGCAAGAACAGCAGAAAGGGGACTTTTAAGATGTGACAAACATGAGGCCTCTTCA s mm5.chr10 116170 123 - 130633972 TGGCGATGGTGTTGGCCTCCTCCTTGTGTGTGA---GCTCAGTGGAAGAGCTGGACTGGACAACATGCTGTGTGTGGAAACAGCA-CAAGAGGGCCTTGAAGATGCTGCGGCCACGGGGCTTCTTAG s canFam1.chr10 4950413 126 + 72717409 TAGCAATGGTGTTGGCTTCCTCCTTGTATGCGGAGAGCTCAGTGGAAGAGCTTGACTGGCCAACATGCTGGGCACGAAAACAGCA-GAAAAAGGCCTTGAAGATGTTCCGTCCACGAGGTTTCTTAG a score=6557.0 s hg17.chr7_random 306403 21 + 778964 GAGAGGACTTTGGAAACCAGG s panTro1.chrUn_random 63597900 21 + 240967748 GAGAGGACTTTGGAAACCAGG s mm5.chr10 116293 20 - 130633972 GCGAGGAC-TTGGAGACTAGG s canFam1.chr10 4950539 20 + 72717409 GAGAGGAC-TTGGAGACCAGG s danRer1.chr9 28052835 16 - 28422069 GACAGAGCTTTGCCTA----- a score=4365.0 s hg17.chr7_random 306424 3 + 778964 CCT s panTro1.chrUn_random 63597921 3 + 240967748 CCT s mm5.chr10 116313 3 - 130633972 CCT s canFam1.chr10 4950559 3 + 72717409 CCT s fr1.chrUn 248110047 3 + 349519338 CCT s danRer1.chr9 28052851 3 - 28422069 CCT a score=58042.0 s hg17.chr7_random 306427 69 + 778964 -TGTTTGGTAAGGACCAGGGCATCTTCCCTCCATGCCTGGGTGATGATGGAGCCTTGTTCCATCTAACAA s panTro1.chrUn_random 63597924 69 + 240967748 -TGCTTGGTAAGGACCAGGGCATCTTCCCTCCATGCCTGGGTGATGATGGAGCCTTGTTCCATCTAACAA s mm5.chr10 116316 69 - 130633972 -TGCTTGGTGAGCACCAGGGCGTCTTCCCTCCGCGCCTGGGTGATGATGGAGCCGTGTTCCATCTAACAA s canFam1.chr10 4963829 69 + 72717409 -TGCTTGGCGAGCACCAGGGCGTCTTCCCTCCGCGCCTGGGTGATGATGGAGCCGTGTTCCATCTAACAA s fr1.chrUn 248110051 65 + 349519338 -TTTTCGGGGA-CACCGAGACGTCTTCTTTCTGGACCTGGGTGATAATAGAACT---TTCCATTTGACAA s danRer1.chr9 28052854 66 - 28422069 GTTTTCGAAGA-CAACCGAGTATCCTCTCTCTGCACTTGAGTGATGATAGAACT---TTCCATCTAACAA a score=21099.0 s hg17.chr7_random 306496 161 + 778964 TCCTGAGGGC------------------------------------------------------TGGGCTGG-------------------------------------------GGGGCATGGGCTGGGGCCT-----GATTCAGTTC-----------------------------------------------------CCGAGATTCTGACCTCCACAGCTGTTCACATACCC-CTTCTCCTTTCCATACTGGCCGGGAAGG--GAGGTGGCTTG------TAGGG-AGGGTGGT-TGGCCTTGGCAGCGGC-----TCCCCAGTGTG s panTro1.chrUn_random 63597993 206 + 240967748 TCCTGAGGGC------------------------------------------------------TGGGCTGGCTGGGTGGGAAGACTGGCAAGCACGCTGGTTGGACTGGGCTGGGGGGCATGGGCTGGGGCCT-----GATTCAGTTC-----------------------------------------------------CCGAGATTCTGACTTCCACAGCTGTTCACATACCC-CTTCTCCTTTCCATACTGGCAGGGAAGG--GAGGTGGCTTG------TAGGGGAGGGTGGAATGGCCTTGGCAGCGGC-----TCCCCAGTGTG s mm5.chr10 116385 200 - 130633972 TCCCGCGGGCCCGG----------------------------GCTGGCTGGGCGGGAAGACGCGCGGGCGGG----------------------------------CTGGGCTGGGGGGCCTGGGCGGGGGCCCGTCGGGCTCCGGCTC-----------------------------------------------------CCGAGACTCCGACTCCCGCAGCTGTTCACATCCCC-CTCGCGTTTCCTCCCCGGGCCGGGAAGG--GAGGCGGCCTG------CACAG-AGGGCGGG-CGGGCCAGGCGGCGGC-----TTCCCCG-GTG s canFam1.chr10 4963898 257 + 72717409 ccccgcgggcccgggctggctgcgcgcggggccggcgggcgcg---------------------cAGGCggg---------------------------------gctgggctg-ggggcctgggcgggggccc-----gctccggctccggctgcggctgcggctgcggctgcggctgcggctgcggctccggctgcggctCCGACGCTCGCGCTCCCACAGCTGCTCACATCCCCGCCCTCGCGTCCTCCCCGGGCCGGGAAGG--GAGGCGGCCTG------TACGG-Agggcggg-cggcccgggcagcggc-----tcccccgggtg s fr1.chrUn 248110116 134 + 349519338 TCACGGAGCC----------------------------------------------------------CTGG--------------------------------------------------------AAATCC--------TCAGATC-----------------------------------------------------CTG----------TCCCGGAGC----------ACT-GTCGACCGTCCCTCATTGGCTTGCGCGGACGAGTGGGCTTGATAATCCAGAG-AGGAAAGC-TGTCATCCGCCTCGGTCCGAGTCCTCGGGGTG a score=18553.0 s hg17.chr7_random 306657 46 + 778964 CCCCCATCCCCGATTCCCCCAGCGAGAGCTTCAAGATCCTCAGTTT s panTro1.chrUn_random 63598199 46 + 240967748 CCCCCAGCCCCGATTCCCCCAGCGAGAGCTTCAAGATCCTCAGTTT s mm5.chr10 116585 45 - 130633972 CCCCCAGCCCCGA-TCCCCCGGTGGCAGCTCCGGGCTCCTCAGTTT s canFam1.chr10 4964155 45 + 72717409 cccccggccccgA-TCCCCCGGCAGCAGCTCCGGGCTCCTCAGTTT a score=5505.0 s hg17.chr7_random 306703 30 + 778964 GGGTCTAACATAGAGAATCC--ACCAGAAACA s panTro1.chrUn_random 63598245 30 + 240967748 GGGTCTAACATAGCGAATCC--ACTAGAAACA s canFam1.chr10 4964200 32 + 72717409 GGGTCCAACATGGAGAATCCGGAGCGAAAACA a score=304634.0 s hg17.chr7_random 306733 3509 + 778964 CAtttttttt-caagttttattttaagttcaggggtccatatgTGATAAAGtttatttttcaacttttatttt-aagtttaggggtccatgtgcagagtatgcaggtctcttacatacataaatgcgtaccactgtggtttactgcacagatcatctcatcacccaggtaccaagcccagcatccgcagctattcttcctgatgctctccttcccctcccccatgccatgaaacaggtgtccagtgtgtgttgttcttcctgatgtgtccatgtgttctcattgatctgcttctgctaataagttagaataataataggcggtgtttggttttctgttcctgcattagtttgctggg-agtaatggct-tcaaattcc-aaccatgtccctgcaagggacatcatctcattacattttatggcttcatagtgttccatggtgtatgtgtaccacatttcctttatccagtgtatcattgatgggcatgtagattgattacatgatgttgctattgtaaatagtgctgcaatgaacatttgtatacatgtatttttaaaatagaattatttatattcctttgggtgta---------atggtattgctgggtcaaatggtagttctgcttctaggtctttgaggaatctccacactctcttcctcaatgcttgaaataatttacactcccaccaacagtgtaaaagtgttcccttttctccacaacctcgccagcatctgttttttttttttt-actttttattaatagccattataatttgtgtgagatggtatctcattatggttttgatttgtatttatgcagttatcagtgatgttgagcttttcatgtttgttgggcacatgtatgtcctcttttgagatatgtctgttcatgttctttgacccttttttaatggggcctttttttttt---ctcttgtaaattttgttaaattcctcctagattctggatattagacatttgtgagatggataggttgcataatttttctcccattctctaggttgtctgctctgatgatagtttctttggctccgcagaagctctttagtttaattagaccccattagtcaatttttgcttttgttgctatagctttttgcctttctgtcataaagtcttttctcatgcctatatcctgaatggtattatctagattttttcttctaagggttttatagttttgggttgtacatttaagtctttaatccatcttgagttaatttttgtacatggtgttaagaagggttccagtttaaattctctgcatatggctagccagttctcctagcaccattttttgaatagggacacctttccctaattccttgtttttgttaactttgtcaaagatcaggttgttgtaggtttttggctttatttctaggttctctactttgtttcatttgtctatgtgtctgtttctataccagtaccatgctgtttttgttactgtactcttctagtatagtttgaagttaggtagagtgacacttccagctttttttttttttt------cttaaggttggcttggctatttgggctcttttttggttccatatgaactttaaaagtttttatttttctaattctctgaagaatgtcagtagttcaatgggaatagcattgaatctatgaattacttagggccatatgcccatattcatgatactgattcttcctctccatgagcatggaatatttctccatctgttttgtgtccactctgatttctctgagcagttgtttgtggttctccttgaagaggtccttcactttctttcttagctgtattcctaggtatttttttctctttgtagcaaatgtgaatgaaagttcattcatgatttgtctccctgcttgcctgttgtttgtgcatgggaatgctagctacttttgcacattgattttatatcctgagattttgctactgttgcttatcaccttaagaagctttgggcctgagacaatgaggttttctagatgtaggatcaggtcatctgcaaacaaagataatttgacttcctctctttctattagaatactctttatttcttcctctggcctgattttcctggccaaggcttctgatactatattgaatggtagtggtgaaagagggcattcttttcttgtgccagttttcaggtggaacgtttctagcttttgcacattcagtatgatattggctgtggg-tttgttgtatatggctcttattattttcaggta-tgtttcttcacttcctagtttat-tgagaattttaaacctgaaagaatgctgaattttattggatgctttttctgcatttattgagataatcatgtggtttttgtatttagttctctttatgtgatgagtcacatttattgatttgcatatgttgaatcaaccttgcatcctggggacaaagccaactccattgttgcggatgaactttttaatgtgctgctggatttgttttgccagtattttattgaggatttttgcacagtgtttaccaaagacattggcatgatgtgttgttgttgttgttgttgttgtagtatctatgttaggttttggtatctggatgatgctggcctgatagaatgagttagagagaacttctttgtcttcaattttttttggatggttttaggagaaaaggtaccatctcctctttgtacctctgctcaaattcagcttgctt-ggtaggctagtttt--tactgcctcagttt-cagaacacattattg-atctattcagggtt-cagtcttgtg-gagggtttattttgcaa-ggaaattgtctatttcttctagattttctggtttatgtgcatacatatgtttatagtgttctctgattgttgttcatatttccatgggatcagtgatgatatctcccttattatttctaattgtgtttggttctcctttcttttcttatttatttgcctagctagtgttccatct--agtttat-taatttttttcataaaaa-cagctcctggatttgttgactttttttttt-ggaagagttttcagtgtctctatctccctcagctctactttgatcttggttatttcttgttttctgctacctttctggttagttttcacttggttttctagttcttttcatcaagatgttaggctgttaattttagatcttt-tagtttctcttttttttcttcttgtggcagagtctcactctgtcacccagg-ctggagtacagtggcatgatctccgctcactgcaacctccacttctcagttttaagtgatttctgctgtctcagcttcctgagtagctgggattacagatgtgcatcacaaaaaccagctaatttttgaattttttttgtagaggtggggttttgttgtgtggtccagactggtcttgaacatctggccttaagtgatttgcctaccccagcctcccaaagtgctggaactacaggcatgagccaccacacccagccctttctatctttttgat-gtggacattagtgctataaatttccctctTTTCTTG s panTro1.chrUn_random 63598275 3543 + 240967748 CAtttttttttcaagttttattttaagttcaggggtccatatgTGATAAAGtttatttttcaacttttatttttaagtttaggggtccatgtgcagagtatgcaggtctcttacatacataaatgcgtaccactgtggtttactgcaaagatcatctcatcacccaggtactaagcccagtatccgcagctattcttcctgctgctctccttcccctcccccatgccatgaaacaggtgtccagtgtgtgttgttcttcctgatgtgtccatgtgttctcattgatctgcttctgctaataagttagaataataataggtggtgtttggttttctgttcctgcattagtttgctggggagtaatagctctcaaattcccaaccatgtccctgcaagggacatcatctcattacattttatggcttcatagtgttccatggtgtatgtgtaccacatttcctttatccagtgtatcattgatgggcatgtagattgattacatgatgttgctattgtaaatagtgctgcaatgaacatatgtatacatgtatttttaaaatagaattatttatattcctttgggtgtatacctggtaatggtattgctgggtcaaatggtatttctgcttctaggtctttgaggaatctccacactctcttctccaattcttgaaataatttacactcccaccaacagtgtaaatgtgttcccttttctccacaacctcgccagcatctgttttttttttttttactttttattaatagccattataatttgtgtgagatggtatctcattatggttttgatttgtatttatccagttatcagtgatgttgagcttttcatgtttgttgggcacatgtatgtcctcttttgagatatgtctgttcatgttctttgacccttttttaataaggcctttttttttttttctcttgtaaattttgttaaattcctcctagattctggatattagacatttgtgagatggataggttgcataatttttctcccattctctaggttgtctgctctgatgatagtttctttggctccgcagaagctctttagtttaattagaccccattagtcaatttttgcttttgttgctattgctttttgcctttctgtcataaagtcttttctcatgcctatatcctgaatggtattatctagattttttcttctaaggcttttatagttttgggttgtacatttaagtctttaatccatcttgagttaatttttgtatatggtgttaggaagagttccagtttaaattctctgcatatggctagccagttgtcctagcaccatttattgactagggagacctttccctaattccttgtttttgttgactttgtcaaagatcatgttgttgtaggtttttggctttatttctaggttctctactttgtttcatt-gtctatgtgtctgtttctatagcagtaccatgctgttttttttactgtactcttctagtatagtttgaagttaggtagagtgacacttccagcttttttttttttttttttttcttaaggttggcttggctatttgggctcttttttggttccatatgaactttaaaagtttttatttttctaattctctgaagaatgtcagtagttcaatgggaatagcattgaatctatgaattacttagggcaatatgcccatattcatgatactgattcttcctctccatgagcatggaatgtttctccatctgttttgtgtccactctgatttctctgagcagttgtttgtgcttctccttgaagaggtccttcactttctttcttagctgtattcctaggtatttttttctctttgtagcaaatgtgaatgaaagttcattcatgatttgtctccctgcttgcctgttgtttgtgtatgggaatgctagctacttttgcacattgattttatatcctgagattttgctactcttgcttatcaccttaagaagctttggacctgagacaatgaggttttctagatgtaggatcaggtcatctgcaaacaaagaaaatttgacttcctctct----attagaatactctttatttcttcctctggcctgattttcctggccaaggcttctgatactgtattgaatggtagtggtgagagagggcattcttttcttgtgccagttttcaggtggaacgtttccagcttttgcacattcagtatgatattggctgtggggtttgttgtatatggctcttattattttgaggtagtgtttcttcacttcctagtttatgtgagaattttaaacctgaaggaatgctgaattttattggatgctttttctgcatttattgagataatcatgtggtttttgtatttagttctctttatgtgatgagtcacatttattgatttgcatatgttgagtcaaccttgcatcctggggacaaagccaactccattgttgcggatgaactttttaatgtgctgctggatttggtttgccagtattttattgaggattttt-cacagtgtttaccaaaaacattggcatgatgtgttgttgttgttgttgttgt---agtatctatgttaggttttggtatctggatgatgctggcctgatagaatgagttagagagaacttctttgtcttcaattttttttggatggttttaggagaaaaggtaccatctcctctttgtacctctggtcaaattcagcttgcttcggtaggctagttctactactgcctcaattttcagaacacattattgcatctattcagggtttcagtcttgtgagacggtttattttgcaaaggaaattgtctatttcttctagattttctggtttatgtgcatacatatgtttatagtgttctctgatggttgttcatatttccattggatcagtgatgatatctcccttattatttctaattgtgtttggttctcctttcttttcttatttatttgcctagctagtgttccatctttagtttatgtaatttttttcataaaaaacagctcctggatttgttgactttttttttttggaagagttttcagtctctctatctccttcagctctattttgatcttggttatttcttgttttctgctacctttctggttagttttcacttggttttctagttcttttaatcaagatgttaggctgttaactttagatctttctagtttctctttttttttttcttgtggcagagtctcactctgtcacccagggctggagtacagtggcatgatctccactcactgcaacctccacttctcagttttaagtgatttctgctgtctcagcttcctgagtaggtgggattacagctgtgcatcacaaaaaccagctaatttttgaattttttttgtagaggtggggttttgctgtgtggttcagactggtcttgaacatctggccttaagtgaattgccttccccagcctcccaaagtgctggaattacaggcatgagccaccacgcccaacgctttctagctttttgattgtgaacatttgtgctataaatttccctctTTTCTTG a score=28336.0 s hg17.chr7_random 310242 195 + 778964 GTTTCCAGTGATTATTTTATTCTATCTTGGTGAGTCATCAGGGAAATAATCTTAAATTTACAATCAACATATAGTTTAAATCC-ATATAAT-TGTGTGAGAAGAACCCTTTGTT-ATTTGAAGGTGATGTTTGAAAGATTTTCTAACTGTGCC-----TTTTAGTTA--GTCTTAAATTTCTAATTGTAGTTAAAA-ACATGCCAT s panTro1.chrUn_random 63601818 196 + 240967748 GTTTCCAGTGATTATTTTATTCTATCTTGGTGAGTCATCAGGGAAATAATCTTAAATTTACAATCAACATATAGTTTAAATCCCATATAAT-TGTGTGAGAAGAACCCTTTGTT-ATTTGAAGGTGATGTTTGAAAGATTTTCTAACTGTGCC-----TTTTAGTTA--GTCTTAAATTTCTAATTGTAGTTAAAA-ACATGCCAT s canFam1.chr5 65392078 204 + 92064832 GTTATCAATGATTGTGTTATCCTGTCTAGGTGAGTTGTCATAAAAATAGAATTAATTTCATCATCTATTTATTG-ATAAATTT-ATATTTTCTGTGTGAGAGAAACACTTTTTTGAATTGAAGGTAATTTTTACAAACTCTTATACCTCTATTATCAACTTTAATTGTTATATTTTAttcttaactgtggtcaaaacacatgacat a score=379253.0 s hg17.chr7_random 310437 4301 + 778964 TGTCATTTCTGACATTTTAAGTATATGGTTTAGAAGTGGTTAGTATAGTTCTATTGTTTTGCAGTAGGTTTTAGATAATTTGTGTCTTACAAAAGTAAAAGTGAATACTCATTACTTAtgaaagaagttagttagcttgccttaggtagatagcaagagaagagtccctggaaagtccctggtcagtgcctcatccctgcataacatataaagaagcctggaaaaaatcaagctgcagacactaacaagggaactagcatatgttgttgtgcttggggacatgcccgtggctgcacagatagaaaaacctctggcccatttggataaaaacttgtagaaacctccagctcactcagataaaggaacaagaacgacctagcatagaaatgcctttgtttgg-ccaggcacggtggatcatgcctgtaattccaacaatgtcggaggcagctgtgggcggatcatctgaggtcgggagtttgagaccagcatgaccaagatggacaaactctgtctttactaaaaatacaaaactagccaggcatggtgctgcatgcctataatcccagctacttgggaggctgaggcaggagaatcgctagaacccaggaggcggaggtttctgtgagccgagatcgcaccattgcactccaggctgggcaacaagagcaaaactgcaaaaaaaaa--taaaaataaataaaaaaagaaagtacatctcaaaaaaaagaaaga----caagaaaaagaaaaaaaagaagcacttttgtctttgtacagtcagtgggctcccaggaaaatgttccttctctttttgttggcatgggcactgtgggatctggtgcattccggtcgacactctcgtttatttggactgtaagtctgacctctatgaataattacttcagcccctgagtgctccc-gggccaagctccttggccaaactttcaccttagcttctgataagtcttgggccaagctaagcagcatctatcaatcatcccttcagctcc-tgattgatcccgggccaaaggcctgggccaagctgagccacacgtttttcaagacagcctgtgaactaggcacatatccttcccttcccagtccataaaaaccctggacccagcctcgtagagggcaccactttcagacacctatctctgctggcaaagagctttcttctcttgcttcttaaactttcactccaacctcacctttgtgttcacgctccttaatctccttagaggtagaacaaagaactctggatgttatctcagactacgagagactgttacatcttggtgcactgctgagactacgacaCTTGgtttctttgagtttgactaaatattttacatgagtgtaattatacagctttcctttttgactgtcttattttacttaacagaatgttttgaagatttgtccttattgtagtacttttcaagatttccttatttttaaggctgaatgctatcccagtgattgtacgtgccctgtttgctgaatctactcatccttaagggtacatttgcttccaggtaacatgtttgtgagtaatactacaatgtgcatatatctattccatgttctgctttgtctgtttgggatatTTTTCATACACTGATTCAGTACCATGTGTATTCCCTT-GCTTTTGTTGTCTCATCCGTTGATGCTACGTCCCCCaaattattgccacgaccagttgtaatgaagcttcacccttctgtattgtgctaggaattttacagctataggttttacattatagtcttcattcattttttaaaattgacacatgtaa-ttgtgcatattttggggaaa-caattatatatatgtgttgtataacaataaaaa--tcag---tactt-ctatatttgttg--cctcatgcatttgtt-atttttgtgg-tgagaa-tattcaaaa-gctccttctct--agctattttATTTTA-TCTTTATGTATTAATTAtttt-agagacaggatcttgctctaacacccagactggtgtgcagtggtgcaatcctagctcactgtaacttcaaacagtcttctaaccttagtttcccaattagctgagactacaagaagctgccaccatgcctggctaatgttttaatttttcatacagacggggtcacactatgttgtccaggctcatcttgaacttctgacgtcaagtgattctcctacctcaatctcccaaaatgtatggattgcaa-gaatatgccaccAAAACTGGtctcttttagctattttgtaatatgagataactttt-catt-aattattattattctactgtgtaa-taaaaaacaaaaacttatttcccctatctaatcataacacaatacctgtgaagcagacttttcccatcctcc-tgcttcagtctctggtaacccctgttgtactctttgcttctatcaaccctttttttcaggttcctcaaatgagtgagataataagatcataaagtatttgtgtttctctgtgtggcttattttacttaacatggtatgctcaaggttcatccatgctctttttaactgacagaattttatgctttcttatggctgaatagtatttcgctgtgtatatatagtacattttccttatccatttatctgttgctgtacatttgaattgattccatatataagctattataaatagttctgtaatgaacatgggaatgcaaatatctttttgacacagtaatatcctttcttttggatatacacccagaagtaaaattgctggatcatataatagatatatttttaatttctttcagaaacctccatactattttctataatggccatactaatttacaattccaccaacaaggtatacatccactcttttttatatcctcattagttcttgatttatttatttatttatttttattatagccattctaatgggaatgaggtggtacttcattgcagtttggatttgcatttccttggtgattagtaatgtagagcatctttttgtgttccagttagccatttttgtatctctttttgacaaacatctattaagatcttttgcattttttaaattagattataagtgtattttattttgagattttaaagtttcttatatattctgaatattagccttttgtcacatgtatatgaaaacattttctgtcatcgcctaagctgtctcttcaaacttttagttgtttttttaatatgaaaaagcattttagtttgacataatgttgtttgtttattcttgattttgttgcccatgttttgaaatcttattttaataatcctttcaccgtccaatgttataaagcatttttttatgtttttctctaatagtttcataattgatggcattacatttaagtctttagttttagttgattatcatatatggcaaggtacaagggtctagtattatttttctgaatataaatatttaaatggccctgcaccatttattaaagagattagcttttctctaaagtgtgttcttggtaattttgttgacaatctgttggctttaggtgcataaattaacttccgggcttattgggcatattagtctatgtgtttgtttttatgccagtacagtgctgttttggttactgtagctttatagcaagttttgaagtttgatgaagtgatgccttcagctttgcttattttgctcaaagttgctttgtctattcagagttttttgtggatccatataaatttaaatttttttatttctgtgaaaaaatgtcattggtattttgataaaaatcacattaagtctgtagatcactttgggtagctatatcaacagtattcttccagtgtataaacacaatatttttt-atttattcatttgtattttatattttttatcc-atgttttgtcgttttcagagtagagatcttttacctttttagttaagtttgttgctaggtgtattagttGGGCTTCCCTAGAGAgatcatgagatcccacaataggttggttgtctgcaagtttgaggagcaaggagaggcggtccatgtcccaaagctgaagaacttggagtctgatgtttgagggctgcaagtgtccagcacaggagaaagatgtagtctgggagcttaggccagtctctctttttcacgtttttctgcctgctttatattcactgtcagctcattagatggtgctcacccaattaagagtggatctccctttcccagcccactgactcaaatgttaatgtcctttggcaacaccctcacagacacacccaggatcaatgctttctatcctccaatccaatcaatttgacaccctgtattagccatcacaTT s panTro1.chrUn_random 63602014 4324 + 240967748 TGTCATTTCTGACATTTTAAGTATATGGTTTAGAAGTGGTTAGTATGGTTCTATTGTTTTGCAGTAGGTTTTAGATAATTTGTGTCTTACAAAAGTAAAAGTGAATACTCATTACTTGtgaaagaagttagttagcttgccttaggtagatagcaagagaagagtccctggaaagtccctggtcagtgcctcatccctgcataacatataaagaagcctggaaaaaatcaagctgcagacactaacaagggaactagcatatgttgttgtgcttggagacatgcccgtggctgcacagatagaaaaacctctggcctattttgataaaaacttgtacaaacctccagctcactcagataaaggaacaagaacgacctagcatagaaatgcctttgtttggtccaggcacggtggatcatgcctgtaattccaacaatgtcggaggcagctgtgggcggatcatctgaggtcgggagtttgagaccagcatgaccaagatggacaaactctgtctttactaaaaatacaaaactagccaggcatggtgctgcatgcctataatcccagttatttgggaggctgaggcaggagaatcgctagaacccaggaagcagaggttgctgtgagccgagatcgcatcattgcactccaggctgggcaacaagagcaaaactgcaaaaaaaaaaataaaaaaaaa-aaaaaaagaaagtacatctcaaaaaaaagaaagaaagacaagaaaaagaaaaaaa-gaaacacttttgtctttgtacagtcagtgggctcccaggaaactgttccttctctttttgttggcatgggcactgtgggatctggtgcgttccggtcgacactctcctttatttggactgtaagtctgacctctatgaataattacttcagcccctgattgctccccgggccaagctccttggccaaactttcaccttagcttctgataagtcttgggccaagcgaagcagcatctatcaatcatcccttcagctccctgattggtcccgggccaaaggcctgggccaagctgagccacacgtttttcaagacagcctgtgaattaggcacatttccttcccttcccagtccataaaaaccctggacccagcctcgtagagggcaccactttcagacacctatctctgctggcaaagagctttcttctcttgcttcttaaactttcactccaacctcacctttgtgttcacgctccttaatctccttagaggtagaaaaaagaactctgaatgttatctcacactacgagagactgttacatcttggtgcactgctgagactacgacaCTTGgtttctttgagtttgactaaatattttacatgagtgtaattatacagctttcctttttgactgtcttattttacttaacagaatgttttgaagatttgtccttattgtagtacttttcaagatttccttatttttaaggctgaatgctatcccagtgattgtacgtgccctgtttgctgaatctactcatccttaagggtacatttgcttccaggtaacatgtttgtgagtaatactacaatgtgcatatatctattccatgttctgctttgtctgtttgggatatttttcatacactgattcagtaccatgtgtattccctttgcttttgttgtctcatccgttgatgctacgtcccccaaattattgccaggaccaattgtcatgaagcttcacccttctgtattgtgctaggaattttacagctataggttttacattatagtcttcattcattttttaaaattgacacatgtaaattgtgcatattttggggaaaacaattatatatatatgttgtataacaataaaaaaatcaggagtactttctatatttgttggccttcatgcatttgtttatttttgtgggtgagaaatattcaaaaagcttcttctctctagctattttATTTTAATCTTTATGTATTAAttttttttagagacaggatcttgctctaacacccagactggtgtgcagtggtgcaatcttagctcactgtaacttcaaacagtcttctaaccttagtttcccaattagctgagactacaggaagctgccaccatgcctggctaatgttttaatttttcatacagacggggtcacactatgttgtccaggctcatcttgaacttctgacgtcaagtggttctcctacctcagtctcccaaaatgtatggattgcaAAGAATATGCCACCAAAACTGGtctcttttagctattttgtaatatgagataactttttcatttaattattattattctactgtgtaaataaaaaacaaaaacttatttcccctatctaatcataacacaatacctgtgaagcagccttttcccatcctccctgcttcagtctctggtaacccctgttgtactctttgcttctatcaaccctttttttcaggttcctcaaatgagtgagataataagatcataaagtatttgtgtttctctatgtggcttattttacttaacatggtatgctcaaggttcatccatgctctttt-aactgacagaattttat----ccttatggctgaatagtatttcactgtgtatatatagtacattttccttatccatttgtctgttgctgtacatttgaattgattccatatataagctattataaatagttctgtaatgaacatgggaatgcaaatatctttttgacacagtaatatcctttcttttggatatacaccgagaagtaaaattgctggatcatataatagatatatttttaatttctttcagaaacctccatactattttctataatggccatactaatttacaattccaccaacaaggtatacatccactcttttttatatcctcattagttcttgatttatttatttatatatttttattatagccattctaatgggaatgaggtggtatttcattgcagtttggatttgcatttccttggtgattagtaatgtagagcatatttt-gtgttccagttagccatttttgtatctctttttgacaaacatctattaagatcttttgcattttttaaattacatcataagtgtattttattttgagattttaaagtttcttatatattctgaatattagccttttgtcacatgtatgtgaaaacattttctgtcatcgcctaagctgtctcttcaaacttttagttgtttttttaatatgaaaaagcattttagtttgacataatgttgtttgcttattctcgattttgttgcccatgttttgaaatcttatttcaataatcctttcaccgtccaatgttataaagcattttttaatgtttttctctaatagtttcataattgatggcattacatttaagtctttagttttagttgattatcatatatggcaaggtacaagggtctagtattatttttctgcatataaatatttaaatggccctgcaccatttattaaagagattagcttttctctaaagtgtgttcttggtaattttgttgacaatcagttggctttaggtgcataaattaacttctgggcttattgggcacattagtctatatgtttgtttttatgccagtacagtgctgttttggttactgtagctttatagcaagttttgaagtttgatgacgtgatgcctttagctttgcttattttgctcaaagttgctttttctattcagagttttttgtggatccatataaatttaaatttttttatttctgtgaaaaaatgtcattggtattttgataaaaatcacattaagtctgtagatcactttgggtagctatatcaacagtattgttccagtgtataaacacaatgttttttcatttattcatttgtattttatattttttatcccatgttttgtcattttcagagtagagatcttttacctttttagttaagtttgttgctaggtgtattagttGGGCTTCCCTAGAGAgatcatgagatcccacaataggttg----tcagcaagtttgaggagcaaggagaggcggtccatgtcccaaagctgaagaacatggagtctgatgtttgagggctgcaagtgtccagcacaggagaaagatgtagtctgggagcttaggccagtctctctttttcacgtttttctgcctgctttatattcactggcagctcattagatggtgctcacccaattaagagtggatctccctttcccagcccactgactcaaatgttaatctcctttggcaacaccctcacagacacacccaggatcaatgctttctatcctccaatccaatcaatttgacaccctgtattagccatcacaTT a score=3175.0 s hg17.chr7_random 314738 13 + 778964 AAGTATTTTCATT s panTro1.chrUn_random 63606338 13 + 240967748 AAGTATTTTCATT s danRer1.chrNA 106813131 13 + 390413307 ATGTATTTTCATT a score=142199.0 s hg17.chr7_random 314751 1558 + 778964 TTTGTAGCTTTTGCATatgcagaagaagaattggatgaaattcagccttgattatgatgaaaactctcaacaagttaggaatagaaggtatgtgccttaactcaataaaggccatttatgaaaaagcaatgctaactttatactgaataaggaaaagttgaaagctttctctctgagatctggaacaagacaaatcgtccaaactttcagccctcttattcaacatagtactggaagtcctagccaaggaaattaggcaagaggaagaaataaaagtcatactaattg-aaaggatgaagtcaaatggtctctgattgtggacaaaataatcttatatgtgaaaaactctaaacactacaccaaaaactattagaactactaaacaaattctgtaacattgcagaaaattaacacagtagtagctttctgtatgatgatagcgaactatctgaaaaataaaattataaattccattttaatagctaccaaaaaTTAGTTATTTTGAGtttatttctttatttgtggtggagtctttctctgtcaccaggctggagcgcagtgacatgatctcagctcactgaaactcttgcctcccggattccagagattctcctgcatcagcctcctgagtgtctggaactgcaggcatgtgccaccaccgccaactaatttttgtttgtatttttagtagagacgttgtttccccatgttggccaggatggtcttgatatcctgaccttgtgattcacttgtctcagtcacccaaagtgctgggattacaggtgtgagccaccacacccagccttgagtttatgtttttatctgttgcaagttaaggtctaactttgttattttttccttgtaaatttttattattcccaatactgtttgttgaagagactgttctttcctttttgtgattcttggaacacattttaaaaatatgtttactatacccatgaggacttatgtctggactctctcatctgtttcatcattcatttgtctttatgtcagtaccaaactgttttgattactatatgttcatagtatgtttagaaaatagaaagtatgatgcctctgtctttatatttttttcccaatattgtttggctgtttgtgatcacttgaaattccataaaaattgtagaatattttaaaacttctgcaaaaagtttcattggtattttgatagaaagtatattgaatcagctgagggttgtggctcatgcctgtaatcccagcactttgggaggctgaggaaggtggaacacctgaggtcaggagttccagaccagccatggagaaaccccatctctactaaaaatacaaaattagccaggtgtggtggcacatgcctgtattcccagctactcaggaggctgaggcaggagaacagcttgaacccaggaggtggaggctgcagtgaactgagatcacaccattgcactccaccttgggcaacaagagcaaaactccgtctcaaaagaaaaagaaagaaaagaaaagaaa-----gaacattgaatccgtagaccacttttggtagtagtgacattttaac s panTro1.chrUn_random 63606351 1564 + 240967748 TTTGTAGCTTTTGCATatgcagaagaagaattggatgaaattcagccttgattatgatgaaaactctcaacaagttaggaatagaaggtatgtgccttaactcaataaaggccatttatgaaaaagcaatgctaattttatactgaataaggaaaagttgaaagctttctctctgagatctggaacaagacaaatcgtccaaactttcagccctcttattcaacatagtactggaagtcctagccaaggaaattaggcaagaggaagaaataaaagtcatactaattggaaaggatgaagtcaaatggtctctcattgtggacaaaataatcttatatgtgaaaaactctaaacactacaccaaaaactattagaactactaaacaaattctgtaacattgcagaaaattaacacagtagtagctttctgtatgatgatagcaaactatatgaaaaataaaattttaaattccattttaatagctaccaaaaaTTAGTTATTTTGAGtttatttctttatttgtggtggagtctttctctgtcaccaggctggagcacagtgacatgatctcagctcactgaaactcttgcctcccggattccagagattctcctgcatcagccgcccgagtgtctggaacgacaggcatgtgccaccaccgccaactaatttttgtttgtatttttagtagagacgttgtttcctcatgttggccaggctggtcttgatatcctgaccttgtgattcacttgtctcagtcacccaaagtgctgggattacaggtgtgagccaccacacccagccttgagtttatgtttttatctggtgcaagttaaggtctaactttgttattttttccttgtaaatttttattattcccaatactgtttgttgaagagactgttctttcctttttgtgattcttggaacacattttaaaaatatgtttactatacccatgaggacttatgtctggactctctcatctgtttcttcattcatttgtctttatgtcagtaccaaactgttttgattactatgtgttcgtagtatgttttgaaaatagaaagtatgatgcctctgtctttatatttttttcccaatattgtttggctgtttgtgataacttgaaattccataaaaattgtagaatattttaaaacttctgcaaacagtttcattggtattttgatagaaagtatattgaatcagctgagggttgtggctcatgcctgtaatcccagcactttgggaggctgaggaaggtggatcacctgaggtcaggagttccagaccagccatggagaaaccccatctctactaaaaatacaaaattagccaggtgtggtggcacatgcctgtattcccagctactcaggaggctgaggcaggagaacagcttgaacccaggaggtggaggctgcagtgaactgagatcacaccattgcactccaccttgggcaacaagagcaaaactctgtctcaaaataaaaagaaagaaaagaaaagaaaagaaagaacattgaatccgtagaccacttttggtagtagtgacattttaac a score=58816.0 s hg17.chr7_random 316309 506 + 778964 aatattaag----tctATAACCTCTTGAACAAGAGTGTgtttgagaatttgttgtttaatttttacttattctttgacatgttagtgttt--------ttaacttcttgttttattgtatcatagttaggaataatttgtgtaatt----ccatctgctgaaatttgctaagatgtgttttttaacttaacaggtggtctatctggaatattgtggcatgtgtgattaaaagtattgcatattc---tactgttgagtggagagatataaatgtgactgttaggtctaattgttctattgtgttgttgaaatcctctgtttacttattcatcttatgtttgttttttaattta--cattactaaaagtctgataaaaaagtcatctactgttat----gtgctggctacttcatgtttcaattctgtaaaatgttgcttcatat-tttgggaactgtgatgtaaggcacatacattactgttgcttttattgttgcatgttgttttattgttgttgcttttattgatatatg s panTro1.chrUn_random 63607915 506 + 240967748 aatattaag----tctATAACCTCTTGAACAAGAGTGtgtttgagaatttgttgtttaatttttacttattctttgacatgctactgttt--------ttaacttcttgttttattgtatcatagttaggaataatttgtgtaatt----ccatctgcttaaatttgctaagatgtgttttttaacttaacaggtggtctatctggaatattgtggcttgtgtgattaaaagtattgcctattc---tactgttgagtggagagatataaatgtgactgttaggtctaattgttctattgtgttgttgaaatcctctgtttacttattcatcttatgtttgttttttaattta--cattactaaaagtctgataaaaaagtcatctactgttat----gtgctggctacttcatgtttcaattctgtaaaatgttgcttcatat-tttgggaactgtgatgtaaggcacatacattactgttgcttttattgttgtaggttgttttattgttgttgcttttattgatgtatg s canFam1.chr25 11551683 495 + 54436876 aattttaagttcctctctgactccttaa--------ttattcagaaacatgcgatttaatctccacatacatttgaattttccagttttccacctgtgttgatttctacttccatactattgtgatcagaaaagattattgaaatgattataatgttctttaatttgttaacacttgttttgtggtgtaatatatgatctatcccagaggatgttccatatgcttttgaaaataatgtgtattctgttgctattgcatagaatattctgtacttatctgtttggtccatatggcctaacacatgatttaagtccaatattttcttattgacttactgtctg---gataatctatccattgatgaaagtggggtattagagttccctactattattgtattgctgtctatttctccctttagttctgtcaatatttattttatatacttaggtgccccactgttggatgcataaa-------------tatttacaaatgttatgttctt-------------ttgatatacg a score=3176.0 s hg17.chr7_random 316815 28 + 778964 ttgttttttgttgcttttattgttgttg s panTro1.chrUn_random 63608421 28 + 240967748 ttgttttttgttgcttttattgttattt s mm5.chr17 73916046 28 + 93559791 TTCTTTCTTCCTTCCTTCCTTCCTTTCT a score=-8038.0 s hg17.chr7_random 316843 123 + 778964 TTGTT---ATTGTCCTTTTCTTCTTCTCTCTTGAGGAAG--TTTTTGATATAAT-ATATATTTTGT------CTACCATGACAGTATTTGATTTTGC-ATTTA-------------ATTTTTTTTATTCTTTCATG--TATGG-CTTATGCg s panTro1.chrUn_random 63608449 118 + 240967748 tt------aTTGTCCTTTTCTTCT---CTCTTGAGGAAG--TTTTTGATATAAT-ATATATTTTGT------CTACCATGACAGTATTTGATTTTGC-ATTTA-------------ATTTTTTTTATTCTTTCATG-GTATGG-CTTATGCG s mm5.chr17 73916074 129 + 93559791 TTCTT-TCTTTCTTTCTTTCTTCCTTCCTTTCTTTACAG--TTTTTGACTTGAC-ATCTCCTTTAT------TTGATATAAAATTAGCTAATGTAGCTACCTC-------------TGCTCTCTTCACTTACCATGCATATGGACTTCCCCT s canFam1.chr25 11552178 65 + 54436876 -------taatgaactt------------------------tttttaatataatgaccttctatgt------ctttggagaatttagtccattt-ac-attta-------------a----------------------------------- s danRer1.chrNA 106813195 146 + 390413307 CTATTACCATTTTTATTTTGTCCTATTTATGCCTTAAAGCTTTTTTGACCCT-C-ATTTTTTCCATTGCTTCCTTACATGTGTTTAGTTGATTTTGT-AGTGACATGTTTGGATACATTTCTCCTTTCCTTTTGTG--TATAT-TCTATACT a score=926.0 s hg17.chr7_random 316966 30 + 778964 -tgttccagatcataatgtg--------------gtcatttgtag s panTro1.chrUn_random 63608567 31 + 240967748 CTGTTCCAgatcataatgtg--------------gtcatttgtag s mm5.chr17 73916203 41 + 93559791 TTACTT----TCAGAGTGTGTGAAGCTGGCACAAGACCCTTGTAA s canFam1.chr25 11552243 14 + 54436876 -----------------gta--------------attatttatag a score=14998.0 s hg17.chr7_random 316996 143 + 778964 gaagcagagagttgaatctt--gtttcatgaatttatttagtgaaagtatgtttttgattgacataatttatatatataaaaaatcattactaaaagggaatgatttccta---tgactttctatttaattttgtttcttttttgttt s panTro1.chrUn_random 63608598 141 + 240967748 gaagcagagagttgaatctt--gtttcatgaatttatttagtgaaagtatgttttcgattgacataatttatatata--aaaaatcattactaaaagggaatgatttccta---tgactttctattgaatttcgtttcttttttgttt s mm5.chr17 73916244 141 + 93559791 ATGATACATAGTGAGCTCTTTGGTTTT---TATTCATGTGGCCACTTTATGTCTT---TTGACTTAATCCATTTACTTAACAAGTAACTATTGATAGGCAAGAACTTTATAGTGTAACTTT-TAGTTGCTTTCTATTCTTTTGTGTAT a score=27394.0 s hg17.chr7_random 317139 320 + 778964 taggtcctgtagctttttcttttgagacggagttttgctctgttgcccaggctggagtgcagtggtgcaatcttggctccctg-caagctccgcctcccggattcacgccattctcctgcctcagattccccagcagctgggaattcaggcacccgccaccatgcccggctatttttatttttatttgtttattttttttagtagagacagggtttcactgtgttagccaggatggtctcaatctcctgacctcgttgatccacccacctcggcctcccaaattgctaggattacaggcgtgagccaccgctcctggccgg s panTro1.chrUn_random 63608739 316 + 240967748 taggtcctgtagctttttcttttgaggcggagttttgctctgttgcccaggctggagtgcagtggtgcaatcttggctccctgataagctccgcctcccgtattcacgccattctcctgcctcagattccccagcagcagggaatacaggcacccgccaccatgccccgctacttttatttttattt-----ttttttttagtagagacagggtttcaccgtgttagccaggatggtctcaatctcctgacctcgttgatcgaccctcctcggcctcccaaattgctaggattacaggcgtgagccaccgctcctggccgg a score=16583.0 s hg17.chr7_random 317459 137 + 778964 tcctgtagct-attatttcctgtttttctctcttgttctctttcttagcatattattgatt-tttatagtgacatgttttacttcttttctcactactctctctgtgt-----gtatGTCTTTGTGTGTGTGTACTAT-AGGTAt s panTro1.chrUn_random 63609055 137 + 240967748 tcctgtcgtt-attatttcctgtttttctctcttgttctctttcttagtgtattattgatt-tttatagtgacatgttttacttcttttctcactactctctctgtgt-----gtatGTCTTTGTGTGTGTGTACTAT-AGGTGt s canFam1.chr25 11552295 145 + 54436876 ttttgtaattcatttatccccttcttcctctcgtgttctattcttttgtggtttggtgattctctatattggtaggcatagattactttctttttatctcttgtatatctacagtaggtttttgtttttgattcttatgaggttt a score=22378.0 s hg17.chr7_random 317596 254 + 778964 ttccttttttttttttttttttgacagggtcttgctctgtcgcccaggctggagggcagtggcacaatatctgcttattgcaagctctgcctctcaggctcaactcaaacaatcctcccaccacagccttctgagtacctgggaccacagatgtgcaccagtactcctggctaatttttgttatttttcatagagacagggttttgccatgttgcccagactagtctcaaaatcctAAGTACTATAGGTATTTT s panTro1.chrUn_random 63609192 250 + 240967748 ttcctttttttttttttt----gacagggtcttgctctgtcgcccaggctggagggcagtggcacaatctctccttattgcaagctctgcctctcaggctcaactcaaacaatcctcccaccacagccttctgagtacctgggaccacagatgtgctccactactcctggctaatttttgttatttttcatagagacagggttttgccatgttgcccagactagtctcaaaatcctAAGTACTATAGGTATTTT a score=2528.0 s hg17.chr7_random 317850 12 + 778964 CTTTGTTGTTAC s panTro1.chrUn_random 63609442 12 + 240967748 CTTTGTTGTTAC s mm5.chr17 73916827 12 + 93559791 CTTTGTAGTTTC a score=525.0 s hg17.chr7_random 317862 69 + 778964 TA--TAGATATTACCAAAAATAACTACTAT-------AGCATAT---------AAAACCCTGCCTCTTTATGGCTGCC------TATGTGTTT s panTro1.chrUn_random 63609454 69 + 240967748 TA--TAGATATTACCAAAAATAACTACTAT-------CGCATAT---------AAAACCCTGCCTCTTTATGGCTCCC------TATGTATTT s mm5.chr17 73916839 77 + 93559791 CACCCAAAGATTACATAAAACATCTGATATTTTTAGCAATGTATTTTAAGCTGAGAACAACAACTTTTTGTTGTTG----------------T s danRer1.chrNA 106813401 68 + 390413307 --GATTGATATTAACT----TAACTTTAAT-------AGCATAC--------AAAAACTACTCCTTTGTATTTCTACCCCACCTTATAT---- a score=33887.0 s hg17.chr7_random 317931 135 + 778964 TATTGATGTCGCGAATTACATCATTTTGTATTGTGAATCTATTGGCACAGTTATATAGTCATTTTTAAGTCTTTGTTAT----CTCAACTACATAGCAGAATTAAAAGTAT-TCTGTGCATCTTCATTATAATAACAAA-A s panTro1.chrUn_random 63609523 136 + 240967748 TATTGATGTCGCGAATTACATCATTTTGTATTGTGAATCTATTGGCACAGTTATATAGTCATTTTTAAGTCTTTGTTAT----CTCAACTACATAGCAGAATTAAAAGTAT-TCTGTGCATCTTCATTATAATAACAAAGA s mm5.chr17 73916916 139 + 93559791 TACTGATGTCACAATTTACATCATTCTGTATTGTGTATCTATTAACAAGTTAACATATCTACAGCTAATAATATATTTTGCGGTCCATTTGCACACAATAGTTAAAAGTGG-CCGGGCCATCACCATTATGGTATTAGA-A s canFam1.chr25 11552722 134 + 54436876 TTTTGATGTTTCAATTTACATATTTTTATATTGTTTATCCATTAACTGATTATTATAGTTATTTATAATTCTTTTGCCT----TTAACCTTTATACTAGAGTTGTaagtga-tttacctactaccattacaatattaga-- s danRer1.chrNA 106813469 128 + 390413307 TATTGATGTAACAAATGACATCTTTATATATTATGTACCCATTTGCATAGATTTATCATCATTTTCATGGATTTACCTT----TTAAATCCAGTA--AAAAATAAAAGTGGAATTATAAACCAAAAGTACAAAA------- a score=13518.0 s hg17.chr7_random 318066 120 + 778964 -------ATATTATAATTGTG--TACATAATTATCTGT--TAGAA-AACTTTATA-TTTTACATAATTCTATGTTGCTCTCATCATTATTTTATT-TTTTAATGTCAATGAC------TAGCATTTTTTT--ATACAGGCCT s panTro1.chrUn_random 63609659 120 + 240967748 -------ATACtataattgtg--tacataattatctgt--tagaataactttatg-ttttacataattctatgttgctctcatcattattttatt-ttttaatgtgaatgac------tagctttttttt---tacaggcct s canFam1.chr25 11552856 131 + 54436876 -------atattttgattttaactatatatttacctttaccagtg-agtattatacttttatgtattcttatccta--ctggttagaatcttttc-ttttatcttgaaaaactccatttaacatttcttgtaagaccagtct s danRer1.chrNA 106813597 136 + 390413307 ATGCTGGGTTTTATATTTGAC--TATGTATTAGCCTTTACAGGGG-ACCTTCATA-TTTTACATGGCTTTGCATTA--TTGTCTAGCATTCTTTCATTTCAAATTGAAGGACTTCCTTTAGCACTACTCATAAGGCAGGTCT a score=87186.0 s hg17.chr7_random 318186 774 + 778964 ACCGTGCATAAATTAATAcagttttcgttgatcttgaatattctttatttttattttttaattcatttgaaatgatagc---------tttggcagacatagtgttcttggttggtacttgccatttttttcagcactttgagtatgtcatcctacaacc-tcttgcctgcatgctattggctgagacatctgctggtcatcctataggggtaacattgtacatgctaagtca-ttttttcttgctgacttcaagattctcggtgttttaacatttgaatct---ctgattaaaatgtgtcttgtcatgggtctccctg-----------tgttgctactagttggtaaagtttcattaaattttaggccattttctccctcaaattttgagagtt-ctcagccactgttt--------gtttcttga--aataactttgctgctctcttttctctctttttattttagaattccc-attagaagtatattggccatcttaatggtatcccataagtcccttagg--------ctttcttaatttttaaaattatttttaccctcctcaccatataatttcaaaagacttcttatgaagcttgctggat-tttttcctgctagatcaaaccagttgttggac-------------------------------cttctagtgaatctctaaattcaggtattttatttttcagctccacactttatgtttctattttgtacttttaatcacttcattgataatctcattatcttcatgaattgttttctttttctgtttagctttctatgt----tcttctttagctgaatgagcatctttaagctaggtgtttt s panTro1.chrUn_random 63609779 774 + 240967748 actgtgcataaattaatacagttttcattgatcttgaatattctttattttt-ttttttaattcatttgaaatgatagc---------tttggcagacatagtgttcttggttggtacttgccattttttccagcattttgagtatgtcatcctacaacc-tcttgcctgcatgctattggctgagacatctgctggtcatcctataggggtaacattgcacatgctaagtca-ttttttcttgctgacttcaagattctcggtgttttaacttttgaatct---ctgattaaaatgtgtcttgtcatgggtctccctg-----------tgttgctactagttggtaaagtttcattaaattttaggccattttctccctcaaattttgagagttactcagccactgttt--------gtttcttga--aataactttgctgctctcttttctctctttttattttagaattccc-attataagtatattggccatcttaatggtatcccataagtcccttagg--------ctttcttaatttttaaaattatttttagcctcctcaccatataatttcaaatgacttcttatcaagcttgctggat-tttttcctgctagatcaaacctgttgttggac-------------------------------cttctagtgactctctaaattcaggtattttatttttcacctccacattttatgtttctattttgtacttttaatcacttcgttgataatctcattatcttcatgaattgttttctttttctgtttagctttctatgt----tcttctttagctgaatgagcatctttaagctaggtgtttt s canFam1.chr25 11552987 781 + 54436876 agtggtgatgaaatccttcagcttttgtttgtctggaaaactctatgcc----tccttcaattctgaaggacacatagaggatcctggtttgccaggtagagaatac-tggtttgcagtttt--tttctttcagtactttgaatatatcatgatactcccttccagcctgcaacatttcttctgaaaaatctgatag------tacaagttt-attttttatgtaccaggttgcttctttctagcttctttaaagattatc----tcttaacctttaacttttgactaattataatgtgtgtctgtgtgggtctctttggtttatcctttttttagtactctttgg----gtttcctggatctggatgtctgtttctttcctcaggttagagaaattttcagatattattttttagatagtattttgattaataa--------------tatctcttttctacttctgggaccccctattacatgtatcttagtctgcttgatgg--tcccataagtcccttaagtggtcttcccgttttcattcttttttctcttttttcttctctggttggatgaattccaccaaccgatctttgaaattactaaatctttctttcatttgatctagtcagtttttgaactactctattggatttttctttcttttttttttttctattggatttttcaattcagtcattatattcttcaacactat------tgtttctatttgatactttaaa----------aata--------------------ttttttatgtttatgttgaaattctcatgcattgtcttcctgacctcagtgagaatctttatgactgttatttt a score=266351.0 s hg17.chr7_random 318960 3038 + 778964 agccaggcacattgatatgtgtgtctaattccagct-actttga-aagctaaggcaaggggattactgtattaataaattctcatgcagctaataaagacataaccaagactggataattcataatgaaaaaggttaatggcctcacagtttcacatggctggggaggtctcacaattattggagcaaacaagagactttgttcaggggaatctccacttataaaaccatcagatcacgtgagacttttttgctatcatgagaacagcatgggaaaatcccacccccatgattcaattacctcccacagggtccctcccaggacatgtggagattattacaattcaagatgagatttggttggggacagagagccaaaccatatcaattacttaaggctaggagtttcagaccaccctgggcaatattgtgagaagctatatgtaaaaaatatttttacagattaatcatgaatggtggaatgttcctgtagtctcaggaagttggaggctgatgtaagattattccttgagttcccaggaatttgaggctgcattgagttataaccatgatattgtattcctgtctgggtgagagagtaagaccGCCTTTTAGAAtttcaaatttgttttagatttaggaggtacctacacaggttttttacatgggtatttt-gtatagtgctgaggtttgaaatataagtaattccatcacttatgcagtgagcatagtactaaatagacagtttttcagttcttgatccctccctctctccaccctctaagagttgtcttttatttttatttttatgtccatgtgtacccagtgttaatttccatttataagtgagaacatcagtatttttgttttccatttctgcattaatttgattgtagaatgacctttagttgtattaatgttgctgcaaaggacaagttttttttttgttgttgttg---------------tttttgctaagtagtattgctgtacatgtgacactttttaaattcaatttagcattaataggctggacacggtggctgatgcctgtaatcccagcactgtgggaggccaaggtgagtggatcatgaggtcaggagatcgagaccatcctggacagcataatgaaacccccgtctctactgaaaatacaaaagttagccggacgtgttgtcatgagcctgtagtcccagctactcgggtggctgaggcaggagaattgcttgaacctgggaggtggaggttgtagtgagctgagatagtgccactgcactccagcctgggcaacagag-tgagacttcatctcaaaaaaaaaaaaata---ccattaatagtcacgtaggttgattcatgtctttcctgttataaataatgcagtg-atgaaccaacaagtgcatgtgctgttttggtagaatagtttattctcttctgggtatacacccagcggtgaaatt-ctgcgttgaatcatagttcaactctcagttatttggaaaatctccaagctgctctccacagtggctgaactaatttatattcctataaacagtgtataagtggtttttt-ccctctaaaaccccaccaatatctactatcattttactttttaacaaaagccattctaactggtgtacgatggtgtcttactgtggtttttatttacatttccttgatggttagtgataagctttttt-catgttgtttggccacttgtatgtattcttttgaacattgtctgttattgcccactttttcatggggtaattttttgcttgtgaattctttaagtttcttatagattctgagtattagattttgtcaggtttataggttgtgaatatttttgccattctgccagctttggggttagtttgtttttgtttttctagtttctctaagtgtgatgttaaattgttagtttgagatcattctaacttcttgatgcagatatttagcactctcaactttcctcttaacagagcttttcctacaacccagacattttagtatattgtgtctcttcatttatttcaaattttttttaagtttctgcctcaattttgttgtttacccaaaattcattcaggagcaagttgtttaatttcaatgccattctgtgattttgtgagattttgttggtattgatatttatcttttttcc-attgtggcctgac-agt--atggttggcataattttcatttttaaaaaatgtatggataattgctttatggctaggaagtggtcaatcctagagtatattctgtgagcgatgagaagaatttatgttccttagatgatgtgtggtgtatactataaatgtctattagtttcaattgatcaagtgcgaaatcaaactccagaatttctttgttaagtttctgcctagataatctgacaaacactgttattggggagttgcgtttccctactattattgcgtggctacttgagtcttattgtaggtctagcagtacttgttgtataactctatgttccccaaagttgggtgcatctatatttaggatagttaagtcttcttgttgaattgaactctctatcgttatgcaatgcctttctttgttttattttactattaatgatttaaagtcctttttTCTTAAAAGAGAAACAATTccaggtatggtggctcatgccagcactttcagactgaggcagtaggattgcctgagaccaggagtttgagaccagccgaggcaacat-aacaacattctgtttgtacagattcttttaaagaaactatacaggtgtggtagtgtgcccaactgtggtcatatttactcaggagacataggaggcatgactgctttacttcagaaatttgaggttacagtgagctgtgattgcaccactgcaatctgtcccaggagatagagtaagatcctgtgtataaaatgaaaaaataaagaaaaaTAAAATGATTTTAAGTTAAAAAA-TaattcatagatctccacttctttagggtcacttgaatatatatttttctcgtttcattaggctatatttcctggttgCTTTTATGTACTGTGGTTTTGTTAAG s panTro1.chrUn_random 63610553 3061 + 240967748 aGCTAGGCACAATGATATTTGTGTCtaattccagcttactttgacaagctaaggcaaggggattactgtattaataaattctcaagctgttaataaagacataaccaagactggataattcataatgaaaaaggttaatggcctcaccgtttcacatggctggggaggtctcacaattattggagcaagcaagagactttgttcaggggaacctccacttataaaaccatcagatcacgtgagacttttttgcaatcatgagaacagcatgggaaaatcccacccccatgattcaattacctcccacagggtacctcccaggacatgcggagattattacaattcaaggtgagatttggttggggacagagagccaaaccatatcaattacttaaggctaggagtttgagaccaccctgggcaatattgtgagaagctatatgtaaaaaatatttttacagattaatcatgcattgtggaatgttcctgtagtctcaggaagttggaggctgatgtaagattattccttgagttcccaggaatttgaggctgcattgagctataaccatggtatggtattcctgtctgggtgagagagtaagacTGCCTTTTAGAAtttcaaatttgttttagatttaggaggtacctacacaggttttttacatgggtatttttgtataatgctgaggtttgaaatataagtaattccatcacttatgcagtgagcataatactaaatagacagtttttcagttcttgatccctccctctctccaccctctaagagttgtcttttatttttatttttatgtccatgtgtacccagtgttaatttccatttataagtgagaacatcagtatttttgttttccatttctgcattaatttgattgtagaatgacctttagttgtattaatgttgctgcaaaggacaagttttttgttggttgttgttcgttgttttttttttttttttgctaagtagtattgctgtacatgtgacactttttaaattcaatttaccgttaataggctggacacggtggctgatgcctgtaatcccagcactgtgggaggccaaggtgagtggatcatgaggtcaggagatcgagaccatcctggacagcataatgaaacccccatctctactgaaaatacaaaagttagccgggcgtgttgtcatgagcctgtagtcccagctactcgggtggctgaggcaggagaattgcttgaacctgggaggtggaggttgtagtgagctgagatcgtgccactgcactccagcctgggcaacagagctgagacttcatctcaaaaaaaaaaaaaaaaaaccattaataggcacgtaggttgattcatgtctttcctattataaataatgcagtggatgaaccaacaagtgcatgtgctattttggtagaatagtttattttcttctgggtatatacccagcggtgaaattgctgagttgaatcatagttcaactctcagttatttggaaaatctccaagctgctctccacagtggctgaactaatttatattcctataaacagtgtataagtggtttttttccctctaaaaccccatcaacacctactatcattttactttttaacaaaagccattctaactggtgtacgatggtgtcttactgtggtttttatttacatttccttgatggttagtgataagctttttttcatgttgtttggccacttgtatgtattcttttgaacattgt----tattgcccactttttcatggggtaattttttgcttgtgaattctttaagtttcttatagattctgagtattagattttgtcaggtttataggttgtgaatatttttgccattctgccagctttggggttagtttgtttttggttttctagtttctctaaatgtgatgttaaatttttagtttgagatcattctaacttcttgatgcaggtatttagcactctcaactttcctcttaacagagcttttccaacaacccagacattttagtatattgtgtctcttcatttatttcaaatttttttt--gtttctgcctcaattttgttgtttacccaaaattcattcaggagcaagttgtttaatttcaatgtcattctgtgattttgtgagattttcttggtattgatttttatcttttttcccattgtggcctgacgagtccatggttggcataattttcattttttaaaaatgtatggataattgctttatggctaggaagtggtcaatcctagagtatattctgtgagcgatgagaagaatttatgttccttagatgatgtgtggtgtatactataaatgtctattagtttcagttgatcaagtgtgaaatcaaactccagaatttctttgttaagtttctgcctagataatctgacaaacacagttattggggagttgcgtttccctactagtattgtgtggctacttgagtcttattgtaggtctagcagtacttgt---ataactctatgttccccaaagttgggtgcatctacatttaggatagttaagtcttcttgttgaattgaaccctctattgttatgcaatgcctttctttgttttattttactattaatgatttaaagtcctttttTCTTAAAAGAGAAACAATTccaggtatggtggctcatgccagcactttcagactgaggcagtaggattgcctgagaccaggagtttgagaccagctgaggcaacatgaacaacattctgtttgtacagattcttttaaagaaactatacagctgtggtagtgtgcccaactgtggtcatatttactcaggagacataggaggcatgactgctttacttcagaactttgaggttacagtgagctgtgattgcaccactgcaatctgtcccaggagatagagtaagatcctgtgcataaaatgaaaaaataaagaaaaataaaatgattttaagttaaaaaaataattcctagatctccacttctttagggtcacttgaatatatatttttctcgtttgattaggctatatttcctggttgcttttacatactgtggttttgttaag a score=68824.0 s hg17.chr7_random 321998 719 + 778964 GTTTTGGTCAATTAAGAAACCACTACCTATTTTATCCTTTATGAAAAAGCTTTGTACATGGGAAAATTGACAATATTCAGCCACACTAGTCATTCCGGGAGCTTCTCCAATCTGTTGTCAAAATGTGTCTTCTTTG---TACTGTATGTATTTTCTTGTTAATAAGGTTTACCTCTCTTTCCTCTTAGGAGCCTTTA-GTCTCTTCTCTTTGTCACTGTTGCAGGCACTACAGTCTCT-TTGTTGT---AAGAAATATTTATCTTTATTCTCAGTCGACCCAAGCTGTCATTTAAACTCTATCTCTATTCTGGTCAACACTAAATGTTAAAGGTATAAAT---------------CAATAAGTCAGAAGTTTGCATACACGTTTCACTC-TGTTTTCTTTCCCGAGGGAGAATCATGGAATGGACAGAATTTT----ATCTAACTGCACTGTTCT------TTAGTGCAGAAATGTAACCAAATTTTCTTTCTTC-TAAATGTGGTTATGGTTGGCTTT-TTTCTCATGAGGGGTGCTACAAACT--CAACTGGCTTT----GCTCACCCAATTGCAGT----TAAGTTCATACATCCATTGAGAGAAACAGGATCTCAGG-----TTCTTCTTCAACTATCATTGTGTTCTCAGCTGGCC--TCATTTTGTTCATTAGATTTATAAAATATATTTACCTTAATTTCATCACCGaattttttaaa-------aaattattattttCCAGCTCTTTTAGCATTATATCCAACAAGACCCA s panTro1.chrUn_random 63613614 723 + 240967748 gttttggtcaattaagaaaccactacctattttatcctttatgaaaaagctttgtacatgggaaaattgacaacattcagccacactagtcattctgggagcttctccaatctgttGTCAAAATGTGTCTTCTTTGGACTACTGTATGTATTTTCTTGTTAATAAGGTTTACCTCTCTTTCCTCTTAGGAGCCTTTA-GTCTCTTCCCTTTGTCACTGTTACAGGCACTACAGTCTCTGTTGTTGT---AAGAAACATTTATCTTTATTCTCAGTTGACCCAAGCTGTCATTTAAACTCTATCTCTATTCTGGTCAACACTAAATGTTAAAGGTATAAAT---------------CAATAAGTCAGAAGTTTGCATACACGTTTCACTC-TGTTTTCTTTCCCGAGGGAGAATCATGGAATGGACAGAATTTT----ATCTAACTGCACTGTTCT------GTTGTGCACAAATGTAACCAAATTTTCTTTCTTC-TAAATGTGGTTATGGTTGGCTTT-TTTCTCATGAGGGGTGCTACAAACT--CAACTGGCTTT----GCTCACCCAATTGCAGT----TAAGTTCATACATCCATTGAGAGAAACAGGATCTCAGG-----TTCTGCTTCAACTATCATTGTGTTCTCAGCTGGCC--TCATTTTGTTCATTAGATTTATAAAATATATTTACCTTAATTTCATCACCGaattttttaaa-------aaattattattttCCAGCTCTTTTAGCATTATATCCAACAAGACCCA s canFam1.chrUn 10815918 726 + 91062872 TATTTGGGAATATAAAAACCAGCCCCAGGTCCCAGGCTTTCTGAATTTGCTTTGTATAGAAGAA----GACAA-AGTCAGTTGTGCTAGTAAATTCTGAATCCTATTCAACATATTCTGAGGGCGTATAAAGTCTGAGATTTTGTA---ATTTCCCAATTAAGGAAATGTTTGTTGGTTCCTATTTAGAATATGTTACATTTCTCTCCCTGATGTTTGATTTTAGCTCTGCCATCTCT-CTGGTGTTTGCAGAAATACTTA------------------ATATGCTGCCATTC--------CCTCTGCCCTTGCTGTCAT---GTGTGACAGAATCAAGTCCCCTCAGGCAGCTGCAATGAAGTAGATCACGGCCCACACAGGTCACTCATGTCTTCTTTCCTGAG---------CAGAGTTGAGAGTTTTCTCACAATCTTGCCATGCAGTGCCAGGTGAGTGGTGAGCAAGCATAAAAACCTTTTTGTCCCTCTTTCATATGGTTCTTCTTCATTTTGTGTTTCCTTGGGGGTACTGTGTTCTCCCAGCTGGATTCTGGAGCACTCCAAAAGGCAGTCTCATCAGTTTGTTTCTCCAT--GGAGGAGCAAAGTCTTGGTGCTTCTTATTCCTCTAATCTGCTCATGTCCTGTGATGGGCATCAATTTTTTACATTAGCACCTTATAGTATATGCACATAAGTATAGTAAGCGGAATAATCTAATCTCTTTCAGTTATGCCTTTTCATCACACTTTGTGCTATGGACAAAGA----CA a score=38322.0 s hg17.chr7_random 322717 322 + 778964 GACAAAACAGTACATAGGAGCTTCTTTTCAAAAAGTA----ATATTGGGAAGATATGGGAGCTCTGGCCTTGAAAATTTACACTTAAGGAGAG--TGGGAAATTGAAGGATAAGTGTAAAGGG-TACAAAGGATGC------TATGATGAAT--------ATACCAGATATAGAGCAACT-------ACCTACAGCAAAAATGTCACTGCTAGAAGAGCTCAAAACCATAAAGTATTT--TGGAAAAAGCATAATTAATGTTGATTCTTTT---------TTCTGAACTATATATTTGTATAATTACATATCAATAACAATTTTTGAAAC--AT-C------------ATGT-TTTTGAA-----ACAAAATTTAGAAAATC s panTro1.chrUn_random 63614337 324 + 240967748 GAGAAAACAGTACATAGAAGCTTCTTTTCAAAAAGTA----ATATTGGGAAGATATGGGAGCTCTGGCCTTGAAAATTTACACTTAAGGAGAG--TGGGAAATTGAAGAATAAGTGTAAAGGG-CACAAAGGATGC------TATGATGAAT--------ATACCAGATATAGAGCAAAT-------AGCTACAGCAAAAATGTCACTGCTAGAAGAGCTCAAAACCATAAAGTATTT--TGGAAAAAGCACAATTAATATTGATTCTTTT---------TTCTGAACTATATATTTGTATAATTACATATCAATAACAATTTTTGAAACTTAT-C------------ATGT-TTTTGAA-----ACAAAATTTAGAAAATC s canFam1.chrUn 10816644 316 + 91062872 GACAA-------------AGATTCTTTCCATGGGGTGGGTTATATTGGGACGATATGGAAACTGTGGCCATGAGAATTG--AGTTAGTGAAAGACTGGGAAGATGAGGGGGGAGTGGGAAGAG-CAGAAGGAATAT------TATGATGGAT--------AGAACGAAACTGGAGTACTT-------ACCCATAATGAAATCCTTACTGCCAGGAGAGATCAAGGATCTAAAACATTTGGGGGAAAAATCTTACTTTATGACAGCTATGTT---------TGCAGAACAATGTCTTTATG-AATGCCAGGACCCAAACCACGTTTTAAAC--ATAC------------GTATGCTCCAAA-----ACAAAATTTGGTAAACC s danRer1.chrNA 150746068 345 - 390413307 GAAAAATCGCAAAATATGACATTTTTTTGAAAAATCG-----------CAAAATATGAAA----TGTTTTTGAAAAATCGCA------AAATA--TGAACAATTTTTGAAAAATCGCAAAAAATCACAAAAAATGAAAATTGTTTGAAAAATCGCAAAAAATCACAAAAAATGAAAACTTTTTAAAAAATCACAA-AAAATTTACATTTTTTGAAAAATCGCAAAACATGAAATTTTT--TGGAAAAATCGCAAAATATGATAATTTTTTTGAAAAATCGCAAAAAATGACATTTTTGAAAAATCGCAAAATATGAAATTTTTTTGAAAA--AT-CGCAAAACATGAAATTT-TTTTGAAAAATCACAAAACATG------- a score=1129.0 s hg17.chr7_random 323039 24 + 778964 GCAATAGTGGCCTAGGCCAGGAAt s panTro1.chrUn_random 63614661 24 + 240967748 AAAATAGTGGCCTAGGCCAAGAAt s danRer1.chrNA 150746413 23 - 390413307 AAAATTTTGGGAAAAATCGCAAA- a score=268163.0 s hg17.chr7_random 323063 3044 + 778964 atatcttctaatgctatccctcccatagtcccccact-tcctgacaggct-ccagtgtgtggtgttccccttcctgtgtccctgtgttctctttgtttaactcccaactatgag-agaga-acatgtgatgtttgcttttctactcttgtgttagtttgctgagaatggtggtttccagcttcatccatgtccctgcaaaggacatgaactcatcctttttatgactgcattgtattccatgatgtatacatgccacattttctttattcattctaccactgatgggcatttggtttggttcaaagtttttgctcttgtgcacagtgccataataaacatatgtttgcatgtgtctaagtagtagaataatttataatcatttggttatatacccagtaatgggattgctggatcaaatggtatttctcattgtagatccttgaggaattgccatactgtcttccacaatg-gttgaactaattt-acactctcaccaacagtgtaaaagtgttcctatttctccacatcctctccagcatctgttgtttcctgatttttccaatgatcaccattctaactggagtgagatggtttctcactgtgtttttgatttgcatttatctaatgaccagtgatgatgagtttttttttcatatgtttgttggctgcataaatgtcttcttttcagaagtgtctgttcatgtcctttgcccatttttgatatggttgtttgtttttttcttgtaaatttgcttaagttttttgtagattctgcatattagcccattgtcagatggataga--ttgcataaattttctcc-tttctgtgggttgcctgttcactctgatgatagtttcttttgttgtgaagaagctctttactttaattacatctcgtttgtcaattttggcttttgttgccattgtttttgctgttttattcatgaagtctttgcccacgcctatgtcctgaatggtaatgcctttgttttttggggggtttttatggttttaagtcttacatttaagtctttaatccatcttcagttaatttttgtataactagtaaggaagacgtccagtttcatttttttgcatatggctatctagttttcccaacaccatttattaaataaggaatcctttccccattacttgtttttgtcaggttcatcaaagatcagatggttgtagatgtttgatgttatttctggggcctctgttctg-ttccatttgtcaatatatctgttttggtaccagtaccatactgtcttggttactgtggccttttagtatagtttgaagatagctagtgtgatgcctccacttttgttctttttgcttaggattgtcttgtctatgcaggatcttttttgattccatatgaaatttaaagtagttttttttctaattatgtaaagaaagtcagtgggagcttgatggggataacactgaatttataaattactttgggcagtatggccattttcacaatattgattcttcctatccatgagcacggattgtttttcatttgtttgtgtcctctcttatttccttgagcagtggtttgtagatctccttgaagaagtccttcccatcccttttaagttggattcctaggtattttattctctttgtaacaattgtgaatgagagttcatgcatgatttggctctctgtttgtctattattgtgtataggaattcttgtgatttttgaacactgattttgtatactgagacttttttgaagttgcatattggtttaaggagattttgggctgagacgatggggttttctaaatatacaatcatgtcagctgcaaacagagacaacttgagttcctcttcctatttgattacgctttgtttctttctcttga-ctgattgccctggccagaacttccaatactatattgaataggagtga-tgagagagggtattcttgttttgtgcagattttcaaaaggaatgtttcaagttttttcccattcagtatattggctgtgcgtttgtcataaatagctcttagtatgttgagataagttccatgaatacataattcattgagagtttttaccatgaagaggtgttgaattttgctgaaggccttttttgcatctattgagataatcatgtggtttttgtcattagttctgtttatgtgatggaatacatttattgatttgcatatgttgaacaagctttgcatccgagggattaagctgactagatcgtggtggataagctttttgatgtgctgctggattcggtttgccagtattttattgaggattttcgcatcgatattcatcagggatacgggcctgaaattttctttttctggtgtgtctttgccaagttttggtttcaggatgatgctggatgcataaaatgagttaaggaggagtacctcttttctattgtttgaaatagtttcagaaggaatggtaccagctcctctttgtacctttggtagaattcggctgtgaatccttctggttctggacttcttttggttggtaggct-attagttactgcc-tcaatttt-agaacttgttattggcatattcaggcattcgactt-cttactggtttggacttgggaggg-tatatgtgtccaggaatttatccatttcgtctagatttt-ctagttaatttgcaaagagttttttataatattctctaatggtaatttttatttctgtggatcaatggttatatcccctttatcatttcctattgcatgtatttgattcttctcttcttccttattactctggctagcagtttatttatttcttgatcttttcaaaaaaacagctcctggattcgttgattttttggacgggctttttgtgtgtctatctccttcagttctgctgtg-atcttaattatttcttgtcttctgctagcttttgaatttgtttgctcttgcttccctagattttt-aattgtgatattatgatgccgattttagaccttttctgctttctcttgtgggcatttagtgccataaatttccctttgcacactactttagctgtgtc s panTro1.chrUn_random 63614685 3064 + 240967748 atttcttctaatgctatccctcccatagtcccccactgtcccgacaggcttccagtttgtggtgttccccttcctgtgtccctgtgttctctttgtttaactcccaactatgaggagagagacatgtgatgtttgcttttctactcttgtgttagtttgctgagaatggtggtttccagcttcatccatgtccctgcaaaggacatgaactcattctttttatgactgcattgcattccatgatgtatacatgccacattttctttattcattctatcactgatgggcatttggtttggttcaaagtttttgctcttgtgcacagtgccataataaacatatgtttgcatgtgtctaagtagtagaataatttataatcatttggttatatacccagtaatgggattgctggatcaaatggtatttctcattgtagatccttgaggaattgccatactgtcttccacaatgtgtggaactaattttacactcttaccaacagtgtaaaagtgttcctatttctccacatcctctccagcatctgttgtttcctcatttttctaatgatcactattctaactggtgtgagatggtttctcattgtgtttttgatttgcatttatctaatgaccagtgatgatgagtttttttttcatatgtttgttggctgcataaatgtcttcttttcagaagtgtctgttcatgtcctttgcccatttttgatatggttgtttgtttttttcttgtaaatttgcttaagttttttgtagattctgcatattagcccattgtcagatggatagaatttgcagaaattttctccctttctgtgggttgcctgttcactctgatgatagtttcttttgttgtgaagaagctctttagtttaattacatctcatttgtcaattttggcttttgttgcctttgtttttgctgttttagtcatgaagtctttgcccacgcctatgtcctgaatggtaatgcctttgatttttggggggtttttatggttttatgtcttacatttaagtctttaatccatcttcagttaatttttgtataactagtaaggaagatgtccagtttcatttttttgcatatggctatctagttttcccaacaccatttattaaataaggaatcctttccccattacttgtttttgtcaggttcatcaaagatcagatggttgtagatgtttgatgttatttctggggcctctgttctgattccatttgtcaatatatctgttttggtaccagtaccatactgtcttggttactgtgcccttttagtgtagtttgaagacagctagcctgatgcctccacttttgttctttttgcttaggattgtcttgtctatgcaggatcttttttgattccatatgaaatttaaagtagttttttttctaattatgtaaagaaagtcaatgggagcttgatggggataacactgaatttataaattactttgggcattatggccattttcacaatattgattcttcctatccatgagcacggattgtttttcatttgtttgtgtcctctcttatttccttgagcagtggtttgtagatctccttgaagaagtccttcccatcccttttaagttggattcctaggtattttattctctttgtaacaattgtgaatgagagttcatgcatgatttggctctctgtttgtcttttattgtttataggaattcttgtgatttttgaacactgattttgtatactgagacttttttgaagttgcatattggtttaaggagagtttgggctgagacgatggcgttttctaaatatacaatcacgtcagctgcaaacagagacaacttgagttcctcttcctatttgattacgctttgtttctttctcttgatctgattgccctggccagaacttccaatactatattgaataggagtgagtgagagagggtattcttgtcttgtgcagattttcaaaaggagtgcttcaagctttttcccattcagtatattggctgtgcgtttgtcataaatagctcttattatgttgagataagttccatcaatacataattcattgagagtttttaccatgaagaggtgttgaattttgctgaaggccttttttgcatctattgagataatcatgtggtttttgtcattagttctgtttatgtgatggattacatttattgatttgcatatgttgaaccagctttgcatcccagggattaagctgactagatcgtggtggataagctttttaatgtgctgctggattcggtttgccagtattttattgaggattttcgcatcaatgttcatcagggatacgggtctgaaattttctttttctggtgtgtctttgccaagttttggtttcaggatgatgctggatgcataaaatgagttaaggaggagtacctcttttctattgtttgaaatagtttcagaaggaatggtaccagctcctctttgtacctttggtagaattcggctgtgaatccttctggtcctggacttcttttggttggtaggcttattagttactgccctcaatttttagaacttgttattggcctattcagggattcgactttcttactggtttggacttgggaggggtatatgtgtccaggaatttatccatttcgtctagatttttctagttaatttgcaaagagttttttataatattctctaatggtaatttttatttctgtggatcaatggttatatcccctttatcatttcctattgcacgtatttgcttcttctcttcttccttattactctggctagtagtttatttatttcttgatcttttctataaaacagctcctgggttcgttgattttttggacgggctttttgtgtctctatctccttcagttctgctatggatcttaattatttcttgtcttctgctagcttttgaatttgtttgctcttgcttccctagtttttttaattgtgatattatgatgccgattttagaacttttctgctttctcttgtgggcatttagtggtataaatttccctttgcacactactttagctgtgtc a score=40266.0 s hg17.chr7_random 326107 470 + 778964 ATATTTTAATTTTT-----AAGCCCTCAATCTTTCTTTTTC-----ATCATGACAGTCTTGACTGTTTT------------ATGTTTATGAAAACTGTAAAATTGTTTACACAGTTTTTACAAAGACTTTACCAA-----AAGATTTTATTGAGAATGTACAAACCTGTCAGTCAATTAGGGGAGAAGTTGC----------ATTGTAGTAATAAATAGCCACAAAACAAAACCCTGAAGGACATC-CAAA-CCAGAATAAAACAAAACATTTTAACAAAGAGAAAAAGAACAATCTCGCAACAAATATGTGCAGTTT-----ATATCACAAAGATGTTCACATCTCCACTTTAAAGAGAGCTTTT--AGAAGTTGATTTAAAATATGGGAAAAGACATTATCCCACAC--CACAGAAAAAATAAA----TTTAAGCAGCTCTTAACACATGAACGTATTATCAAG---CTCAGATGGAATCAAAATTAAATATTT-GACAACAGATTCTACAGTTTGAGAGAAAT s panTro1.chrUn_random 63617749 474 + 240967748 ATATTTTAATTTTT-----AAGCCCTCAATCTTTCTTTTTC-----ATCATGACAGTCTTGACTGTTTT------------ATGTTTGTGAAAACTGTAAAATTGTCTACACAGTTTTTACAAAGACTTTACCAA-----AATATTTTATTGAGAGTGTACAAACCTGTCAGTGAATTAGGGGAGAAGTTGC----------ATTGTAGTAATAAATAGCCACAAAACAAAACCCCGAAGGACATC-CAAAACCAGAATAAAACAAAACATTTTAACAAAGAGAAAAAGAACAATCTCGCAACAAATATGTGCAGTTT-----ATATCACAAAGATGTTCACATCTCCACTTTAAAGAGAGCTTTT--AGAAGTTGATTTAAAATATGGGAAAAGACATTATCCGACACTTCACAGAAGAAATAAA----TTTAAGCAGCTCTTAACACATGAACATATTATCAAG---CTCAGATGGAATCAAAATTAAATATTTCGACAATAGATTCTACAGTTTGAGAGAAAT s danRer1.chrNA 150746436 468 - 390413307 ATATGATAATTTTTTGAAAAATCACAAAAAATGACATTTTTGAAAAATCGCAA-AATATGAACAATTTTGAAAAATCGCAAAAAATCACAAAAAATG-AAAATTGTTTGAAAAATCGCAAAAAA----TCACAAAAAATGAAAATTTTTTTAAAAAATCACAAAAAATTTA---CATTTTTTGAAAAATCGCAAAATATGAAATTTTTTTGAAAAATCACAAAAAATGAAAATTTTTTGAAAAATCGCAAAATCACAAAAACTGAAAAATTTTTGAAAAA----------------TCGCA--AAATATGAACAATTTTTGAAAAATCGCAAAA-------------------AATGAAAATTTTTTGAAAAATCG---CAAAATATGAAA------ATTTTTTGAAAA--ATCGCAAAAAATGAAATTTTTTTGAAAAATCACAAAAAATGAAAATTTTTTGAAAAATCGCAAAATCACAAAAAAATGAAAATTT-TTTGAAAAATTGCAAAATATGAAAAAAAT a score=21186.0 s hg17.chr7_random 326577 244 + 778964 AGAAAAGTGTTTTTTTCTTTTCTCCAGGTCCACAAGTC-TAGTTTCTTGGACTCTCTCACTATAATGGAGGTTGTCATCAGCTCCCCAAAATAAGGGAAGCACAGAGCAGATGGTGGCTGAAGGTGGGGAATCCTGTGAAATCATATTTAAGATCATAGCCCGTGGTCCATTGTATTGTAATCAGCTGGCTCAGGAAAGAAGATCTGGATCTCCTGAGCTCTACACCTACTGCAATGGATA-TGTC s panTro1.chrUn_random 63618223 246 + 240967748 AGAAAAGTGTTTTTTTCTTTTATCCAGGTCCACAAGTCGTAGTTTCTTGGACTCCCTCACTATAATGGAGGTTGTCATCAGCTCCCCAAAATATGGGAAGCACAGAGCAGATGGTGGCTGAAGGTGGGGAATCCTGTGAAATCATATTTAGGATCAGAGCCCGTGGTCCATTGTGTTGTAATCAGCTGGCTCAGGAAAGAAGACCTGGATCTCCTGAGCTCTACACCTACTGCAATGGATAGTGTC a score=60923.0 s hg17.chr7_random 326821 653 + 778964 AGGAGTCCCGAGAACCTCTGGGGCCCAAACCCCTCCCACCAAAA-TATATCATCCAGTATTGAGGA-CTCTG-ACACCAAATTCTcacagagcatatgcttatgcaattttacatttaatttctcattacattacaattgggaaaatgaggccccaaaagaggcagggactgatccagatctcaggaggtgggcaggctccagagcattagagagagctccagcttcctaggccttggctccatccCACCTATCAGGTTTGCTTTGGAAGTTAGAGCCTGTAG-------------------------CTTC---------------------------------------------------------------------------------ACATTCAGG---------------------------------------------------------GGCACAGAGAATGAGCAG------------------ATCCAGGGTTCTGT-TCACATGG-GGACCTCT------------------------CCATGTC-----AATTTCAAGATGACAGGACTGGGGTTT----TGCATCCAGCTCTGAGGGC-ACCTGGAAGTAAAATGAGCTATGCTCCACCTCAGCGTAATGTAGAGAATGCCTGCAGGAAAG---CCTGTTTTCTTCCTCATAAATAGGGCTGTTTGAACTGGGTGACCTCGACGATTTCACATACTCATAAGTGTCTTCCAGCCCTGATTC---------------TTG--CTCTGAGACTGTGCAGAAATGCATCCACTCTCTGTAGGTCCTTCAAATCAGAGGGA-------GGCATGGCCACTTCAGAGGCATCTTGGGTAGATGAAGATGAGACGGAGCTA s panTro1.chrUn_random 63618469 658 + 240967748 AGGCGTCCCGAAAACCCCTGGGGCCCAAACCCACCCCACCAAAACTATATCATCCAGTATTGAGGAGCTCTGGACACTAAATTCTCACAGAGCATATGCTTATGCAGTTTTACATATAATTTCTCATTACATTACAGTTGGGAAAATGAGGCCCCAAAAGAGGCAGGGACTGATCCAGATCTCAGGAGGTGGGCAGGTTCCAGAGCTTTAGAGAGGGCTCCAGCTTCCTAGGCCTTGGCTCCATCCCACCTATCAGGTTTGCTTTGGAAGTTAGAGCCTGTAG-------------------------CTTC---------------------------------------------------------------------------------ACATTCAGG---------------------------------------------------------GGCACAGAGAATGAGCAG------------------ATCCAGGGTTCTGT-TCACATGGTGGACCTCT------------------------CCGTATC-----AGTTTCAAGATGACAGGACTGGGGTTT----TGCATCCAGCTCTGAGGGCTACCTGGAAGTAAAATGAGCTCTGCTCCACCTCAGCCTAATGTAGACAATGCCTACAGGAAAG---CCTGTTTTCTTCCTCATAAATAGGGCTGTTTGAACTGGGTGACCTCGATGATTTCACATACTCATAAGTGTCTTCCAGCCCTGGTTC---------------TTG--CTCTGAGACTGTGGAAAAATGCATCCACTGTCTTCCGGTCCTTCAAATCAGAGGGA-------GGCATGGCCACTTCAGAGACATCTTGGGTAGATGAAGATGAGATGGAGCTA s canFam1.chr10 35386861 866 - 72717409 AGGAGACTTGTATACCTGTGCCTGCCAGAGGCCACCCAAACGAA-CACCCCATCCAGTGAGGATGGAGCCAG-AGATCATATCCTC-CTGTGCACATACTTTCACAGTTCCACATCCCAACGCTCTTTA---TACATCTGGGAGTCAGAGGCCCTAAAAGAAGCAGGGA-TGGTCCAGGTCTCAGTACATAGGAAGATCCCAGAAGAAATGTGACTACTTTGGCTTCCTTAGAACAGAGTTCAACCCTCTCAGCACATTTACTTTGGAAACTAGAGTCCCTAAGATCCTTGTTATCCTTGCACAACCCCTTCCAATATGGGCCATTTTACTCACCTCATCCCCAGAAGTACATGGGCATACACAAATGGAAACAGACTTTTTCACAGTTGGAGACATTGAGGGATGGTTAAGGAGAGCAGAATCCCTGCAAGGGACAAAAAAAGAAGAAAGAAGTTGGAGGCACAGACAAGGGGCATCTATTCTCCTGGTGATACATCTAGAGGTCCACAGCATGAGA-GGGACTCTCAAAGTCCCCATAGCCCTGCCTGGCCATATCCCAGTAGTCTCCAGAGGATAAGGCCAGGGCTCCTAATGTCGACAGCTCT--CGGC-TCCTG-----AAACTGGGCACATATCCTTC-------AGTGTAGACAGGGGCTATAGGAAAGGACTCAGTTTCCTACACTACAAAATGTG-TACTTGATGTGTCTGACCACAAGGATTATGTCTGTTTGGAAA-GTTTTTAGACCTTAGTTCAGAACCAAAAGCTCATTGTTCTCTGAGAACATGGACAAATGCTTTC-CACTCCATGAGTTTTTCAGAGAAAAGGGAACATTGGAGCTTGGCAAATGAGGAG----TTTGGG----TGGAGAGGAGGCAGAGCCA a score=135459.0 s hg17.chr7_random 327474 1120 + 778964 AATGTTCCAGAGCATTGGACTCTGAGGCTGAAGTCCACGGAAAATCCCAGCTCCTGTTGGGTTCTTAAGGTCCTCATTTGAA--------AGTGGTAG-AAACTAATTTCACTGGATAAGGGGAGGATATCTCATGGATAAATAGCACAACCCAAAAGGTAGAG-GCAAATAGAAGGCAAAGGGGGATTCCAAGGTCACTCATTGTA-CTTGGGGCCTTCAGATTCTGCTACTTTATCCCCTAGGACCTTGAAGAACCAGTGTCTTGAGGACAGAAAAATCAAGATACC-TGATTTGTTCCATAGTGCTCCTGCATTGGGCCATAGAGTTAGTGATGGCCTGGAGGTGGTTACAGCCAGCTCTGTTT---CTGGTGCCCACTGAGCTTTGCTGGAGCAGCTGGAACAAGTAAGAGTCACACATCTCATGTTGTTATCAATGATCTCCACA---------------------------TTATC----------AGGTGGTCAAAAGAGGAAG-GGATATTAGAGATCCTCCATATAATCACTTAGCCAGTCTTTTTTCCCTTGCGCTCACCCTTTGCCAGCTAACCAGGTGGGTGCAACG-TGGTACAGAAAAT--TATTACATGATGCCTGCACCCCCCAACCCAGGACCAAACATTCTGAGGACAGCT-GGATAAAAGCACTAAAGCAAGTATATGTGAAAGAAAAGAGGAAGGACTATA----ATATAAAGTGGAATGTTGAGAAGAAAAGCTGGAAAATTATTGCATGGGAGGAACT--AAGGCCTCATTGT-GGTGATGTTTAATCCATGATAAGGATGACAACAGGGAGACATCTCTGCACAAGT---------ATGTGTCAGGGAGAAGCCACCCTTAGTGAAGAGACTCATAGGTG-TGAGTTCGGCAGA-----------GGTTAGAAAGTTTGGCTGC-AGACAGCCTGAGGAAGATATAAGTAGAGGGATGGAG-----AATCCTAGGG-CCTGGGAGATGAGGTTAGAtatctg---ctcctttctgacaacattgccctaaaagtcagcacttttcaac---aacatataatatctcataatttatgtggacca-gaatctggacacagttcagttgggtacctctgcctttaggtcttttatgacattggga-ctgtggtcttaactgaagctggactgggaaagcatgagcctttaagctgactca s panTro1.chrUn_random 63619127 1125 + 240967748 AATGTTCCAGAGCATTGGACTCTGAGGCTGAAGTCCATGGAAAATCCCAGCTCCTGTTGGGTTCTTAAGGTCCTCATTTGAA--------AGTGGTAG-AAAATAATTTCACTGGATAAGGGGAGGATATCTCATGGATAAATAGCACAACCCAAAATGTAGAA-GCAAATAGAAGGCAAAGGGGGATTCCAAGGTCACTCATTGTA-CTTGGGGCCTTCAGATTCTGCTACTTTATCCCCTAGGACCTTGAAGAACCAGTGTCTTGAGGACAGAAAAATCAAGATACCCTGATTTGTTCCATAGTGCTCCTGCATTGGGCCATAGAGTTAGTGATGGCCTGGAGGTGGTTACAGCCAGCTCTGTTT---CTGGTGCCCACTGAGCTTTGCTGGAGCAGCTGGAACAAGTAAGAGTCACACACCTCATGTTGTTATCAATGATCTCCACA---------------------------TTATC----------AGGTGGTCAAAAGAGGAAG-GGATATTAGAGATCCCCCATATAATCACTTAGCCAGTATTTTTTCCCTTGAGCTCACCCTTTGCCAGCTAACCAGGTGGGTGCAACG-TGGTACAGAAAAT--TATTACATGATGCCTGCACCCCCCAACCCAGGACCAAACAGTCTGAGGACAGCTCGGAGAAAAGCACTAAAGCAAGTATATGTGAAAGAAAAGAGGAAGAACTATA----ATATAAAGTGGAATGTTGAGAAGAAAAGCTGGAAAATTATTGCATGGGAGGACCT--AAGACCTCAGTGA-GGTGACGTTTAATCCATGATAAGGATGACAACAGGGAGACATCTCTGCACAAGT---------ATGTGTGAGGGAGAAGCCACCCTTAGTGAAGAGACTCATAGGTG-TGAGTTTGGCAGA-----------GTTTAGAAAGTTTGGCTGC-AGACAGCCTGAGGAAGATATAAGTAGAGGGACGGAG-----AATCCTAGGGGCCTGGGAGATGAGGTTAGATATCTG--ACTCCTTTCtgacaacattgcactaaaagtcagcacttttcaac---aacatataatatctcataatttgtgtggacca-gaatctggacacagttctgttgggtacctctgccttcaggtcttttatgagactgggggctgtggtcttaactgaagctggactgggaaagcatgagcctttaagctgactca s canFam1.chr34 15582258 1181 + 45232793 aaaatgccAGAGCACTGTACACTGCATCTGGGGTCCAGGGACAAGACCAGTCTCCACAAGGCCTTCAGGATCCTCATTTAGATAGGCATGGGTGAGAGCAGGGTCACTCTTCTGGCTGAGGTGAGG---TTCCGTATTTGTAAAGTAGACACCAATGGAGAGAACAGGAAAGGAATGAAAGGGAGGATTCTGAGGTCCTTTACTCTGCCTTGGAGCCCATAGGTCCTGTTCCTTTG-CCCCTGTGATTCTGGAAAGCCACTGCCTTGAGGACACCCAAATAAAGCTGTC---CTTTCTTTGGTGGTGTGCCTGCCTGGGGCTGTATTGCTAGAGCTGG---AGAACACGATGCAGGAAACCTCCTTTGCAATGGTAACTAGGGACTTCTGCGGGAGGAACTGCAG-AGGAAAGACTCATGCAGAGGTCATTGTGGTCATCCCCCTGCCCAGAGACAACTTGAAACTCTTAGTGGCATTTCTCCCTTCAGTCTAGATGGCTGAAAGGGGAAGTGGGTTCCAAGAACTTCTCattgattcatt---ccataactaggcactaagtactcaccctatgccaggtaccttggtgggcccatggatggagctgaaaataccatgagttcctgcctg------------taggaactcacagtctggaggt-----ggacaaaagcacaaaaacaaagacacgtgaaagaaaagagcaagtgctatattctacacaagactgtatgccgggaaggaaggttgggaaatcattggagagaaaggtataaaaggtctcactgagggtgacatt---gctgagaacagaataacaaaagggagttagatctacacgcgtctggggacagtgtgtcaggaagaagggacccctgatgcagatactaacagaagctgggttggccagaggaggtgaaatgggcagccagcgcggctgtgaggaaaggaggaggagatctgaggagagggaagagggcagcgaTGCTGAGG-CCTGGTAGAC--tgttagctatctattgttcctctgttactgtgttgccccgacaccttgcatcttacaattcatatatttaatttctcatcggttttgtggatgaggaatccagacacaaattagcttggttcctcaacctcaaggtacatca-gaggttgcag-ctgtgacctcatgggaggctagcctagcagaggattttctcccaaagtgactca a score=129178.0 s hg17.chr7_random 328594 1462 + 778964 tgtgaaaattggcagggtttagtgtggctggagagcctgactttccttctctctactggtctgagcaccccctcagg-ctctgttatgttggtctttacatggagcatctcatagcattgaagcttgcttcCTGTGTTTGAGGTATACAATAGAGAGAGAGAATTAGACAAAAAGGTGTACACAAAAAGAGACAGAGAAAGATTGAGGGCGCAAACAGGAAAAACCCAGTAGGAGAAAAATGAGAGCTTTAGAAAAATCTTGACAgggtgcggtggctcacacctgtaatcccaacactttgggatgctgagacgggtggatcacctgaggtcaggggtttgaaagcagcctggacaatatggtgaaaccaccgtctcttctaaaagtacaaaatgagcaaggtgtggtggtgcatgcctgtaatcccagctacttgggagactgacgcaggggaatcatttgaacctgggaggcgaa-ggttccagcaagccgagatcacaccactgcactcctgcctgggatacaagagtgaaactgtctcaaaaaaaaaaaaaa------------ggaaacaaaaaTCTTGAGAGTTCCAATAATTTTTCTCCTGT-ATTtatgttaaaattgtaacccccgttgtaatgctatacggatgaaagatgtacttaactcctgagggtgggaccttcataatagagattactggctttatacaaggaaccgcagagggctctcttcctccttctgcaaaatgatggtaaaacttgaagtctgcagtctgaaattcagaagcgagtcatcaccagagctcaaccgtgctgacaacctgatctcaaatttcgaacctatagaagtatgagaaattaagtcctgttgtctataagctgcttatctatggttctttggcatagcagcctgaacTAATACAAAAGTGATATCCTTTTCTGTATTTCATTGGACAGAAGCTGAATTTGTACCCCTATGCTGTTAAAAAAATGACTTAAAAtggattttcagaatgaaagataggaaatggcttgttgaaacactaaaatgttatctgcttataagatttttaaacattggctgaaattgttggaa-ctgatatggccaaatgaagtccatgaagaatcagattgcatatgttagagcccaaatttccattgtgtgtttcatactaactctccctgaatttgcatgtgacttgagaggaagcaagaagagatgacagtatatgtctcatgactttccatattcctactttccttccagcaatcccttacagaacccacctcttaggccttttctaatcactgccttaaagccagta-taagaaaacaaatttcagctggactgctatctcctttttggccaacctacaacatgatattttcctcaaaacccaagggccatattactgtcatcaggctgtaggccattttATTCAATAAAAAACTGAGTCACTAACCACCTAGTA s panTro1.chrUn_random 63620252 1479 + 240967748 tgtgaaaattggcagggtttagtgtggctggagagcctgactttccttctctttactggtctgagcaccccctcagctctctgttatgtgggtctctacatggagcatctcatagcattgaagcttgcttcctGTGTTTGAGGTATACAATAGAGAGAGAGAATTAGACAAAAAGGTGTACACAAAAAGAGACAGAGAAAGATTAAGGGCACAAACAGGAAAAACCCAGTAGGAGAAAAATGAGAGCTTTAAAAAAATCTTGACAgggtgcggtggctcacacctgtaatcccaacactttgggatgctgagacgggtggatcacctgaggtcaggggtttgaaagcagcctggacaacatggtgaaaccaccgtctcttctaaaagtacaacatgagcaaggtgtggtggtgcatgcctgtaatcccagctacttgggagactgacgcaggggaatcatttgaacctgggaggcgaaaggttccagcaagccgagatcacaccagtgcactcctgcctgggatacaagagcgaaactgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaGGAAACAAAAATCTTGAGAGTTAAAATAATTTttctcctatgatttgtgttaaaattgtaacccccgttgtaatgctatacggatgaaagatgtacttaactcctgagggtgggaccttcatgatagagattactggctttatacaaggaaccgcagagggctctcatcctccttctgcaaaatgaggataaaacttgaagtgtgcagtctgaaattcagaagcgagtcatcaccagagctcaaccatgctgacaacctgatctcaaatttcgaacctatagaagtatgagaaattaagttctgttgtctataagctgcttatctatggttctttggcatagcagcctgaacTAATACAAAAGTGATATCCTTTTCTGTATTTCATTGGACAGAAGCTGAATTTGTACCCCTATGCTGttaaaaaaatgacttgaaatggattttcagaatgaaagataggaaatggcttgttgaaacactaaaattttatctgcttataagatttttaaacattggctgaaattgttggaaacagatatggccaaatgaagtccatgaagaaccagtttgcagatgttagagcccaaatttccattgtgtgtttcatactaactctccctgaatttgcatgtcacctgagaggaagcaagaagagatgactgtatatgtctcatgactttccatattcctactttccttccagcaatcccttatagaacccacctcttaggccttttctaatcactgtcttaaagccagtaataagaaaacaaatttcagctggactgctatctccttgttggccaacctacaacatgatattttcctcaaaacccaagggccatactactggcatcaggcagtaggccattttATTCAATAAAAAACTGAGTCACTAACCATCTAGTA a score=12546.0 s hg17.chr7_random 330056 98 + 778964 CTGTGAGATTTTGTGAAGAGTTTCCCTGTCATAGA-CGTGAGAAGGCACATGGATATGATTCTAAATATAAAGAGAAAGCACTAGAAAGTTGAATGGCt s panTro1.chrUn_random 63621731 98 + 240967748 CTGTGAGATTTTGTGAAGAGTTCCCCTGTCATAGA-CGTGAGAAGTCACATGGATATGATTCTAAATATAAAGAGAAAGCACTAGAAAGTTGAATGGCt s canFam1.chr34 15583712 99 + 45232793 ctgggagccattgtgaagctTGCAGCACCCAGAGACCAAAACGAGGCAACTAGATCTCATTCTAAATATAACAGGAAACAATTGGACGGTTTTATTACA a score=29344.0 s hg17.chr7_random 330154 331 + 778964 gtattaggactttgtcatactgcaatgatgaagtacttgagactgggtaattgataaagaaaagaagtttaattgactcacagttccacataattgggaggg-cacctcagaaaccttccaattacagtggctgacaagtgaagtgagtgagagcatgggatgtaccagatgcttatgaaactatcagatctcatgagaactcactatcacaagaacagcatgaggagaacccatcccc-ataatccaatcatctcccctcaggtttctcccttaacacctgggggttataatacacagagaagtttgggtggaacacacagctaaactatat s panTro1.chrUn_random 63621829 333 + 240967748 gtattagatcattctcatactgcaatgatgaagtacttgagactgggtaattgataaagaaaagaagtttaattgactcacagttccacataattggggggggcacctcagaaaccttccaattacagtggctgacaagtgaagtaagtgagagcatgggatgtaccagatgcttatgaaactatcagatctcatgagaactcactatcacaagaacagcatgaggagaacccgtcccccataatccaatcatctcccctcaggtttctcccttaacacctgggggttataatacacagagaagtttgggtggaacacacagctaaactatat a score=142233.0 s hg17.chr7_random 330485 1124 + 778964 GAATGCCAGAGGACAGTATCTACATTT-----AATTTCAACTTCATACTGGAG-CAGAATgaaaatgaagcgcagtggagaagtgacattcccaagatcaccctgccaga---cCCAGGCT-TGTTTGAGTTGTGGCCCATGCTACCTTCTACATATTCTCCTAATGCTTCCATCTCTAAGTGTGTGCATT--ATCTACAGGTAACA---CCACAT---GAtttttatgttttatcttatatacatctaatacaatccctaggaagtagatgttagcatcatccccactgtgcatgcttggaggctggggaa-gcctcaaatacacagtgacttttattgggtcccagagatggtaagAAAAAC---------AAGGTTATGTTCCAGCTGTCTCTTATATCCTGGAACCCAGGCTGCATTTAGTT--CTTTCCAGGGAATTAAGGGGAAGTTGTGTTTGCATACTTGTGTACAAATGAAGAGTTGACATGGAAGAGGAGACTGAGCAATTAGTAGCATAGTGGGGCTTTTGGGTAGGTCTTACAGAAAGAAGGGACCCAGTAGATGGAACCTTGAAGAGTTTAACACACTTTCTTGGTGACAACCCAACATCAG--TTAAGA-------AACCAGGAACCCACATTCTTGAGACAGCTCTGTATCCACCTCTGTTAGTGAGAGATGCTCAAGAGAGTGAGATGTTCTTTCATTGTGCCCTGAAATTTCTGAGTTTTGACTTTACAAAGGCTCAGTGTAAAAGCCTTATCTGAAAACACGGATGTCAACTCAGGCCTCATCATTGATGCCCCTGGCTAT-TGGCCGGGTGCACCTACAAATAACACAGGGCAGCTCAGGACAGGCCCC---AGAGCCAGGCCTCTCTTGTCAACTCATCTGGGAAGTCCCACAC-------------CATTTCTTA-----------------------------------------GTACCATGAGTTGTATGGGGAGCAAGAG-GGAGGGCACTCTTCTTTTACTGAAGCAGATTGTCAGGTGTTGGAACCCTTGTGTACCTGTCATGTTCATACCT-AGGCCATAGCTGGCAGAATAAAAAGAAGAGGGTTGGAGAACGAGTCTGTGTACTCAGATGTGAAT------TCCAAGACTTTAACTTGTCCTCTGGTTTCCTTCCTTGCTGGAGATTCATACAGATTCTCCTTATGTGCCTAATCTGAA s panTro1.chrUn_random 63622162 1127 + 240967748 GAATGCCAGAGGACAGTATCTACATTT-----AATTTCAACTTCATACTGGAG-CAGAATGAAAATGAAGCCCAGTGGAGAAGTGACATTCCCAAGATCACCCTGCCAGA---TCCAGGAC-TGTTTGAGTTGTGGCCCATGCTACCTCCTACGTATTCTCCTAATGCTTCCATCTCTAAGTGTGTGCATT--ATCTACAGGTAACA---CCACATCATGAtttttatgttttatcttatatacatctaatacaatccctaggaagttgatgttagcatcatccccactgtgcatgctaggaggctggggaa-gcctcaaatacacagtgacttttattgggtcccagagatggtaagAAAAAC---------AAGGTTATGTTCCAGCTGTCTCTTATATCCTGGAACCCAGGCTGCATTTAGTT--CTTTCCAGGGAATTAAGGGGAAGTTGTGTTTGCATATTTGTGTACAAATGAAGAGTTGACATGGAAGAGGAGACTGAGCAATTAGTAGCATTGTGGGGCTTTTGGGTAGGTCTTACAGAAAGAAGGGACCCAGTAGATGGAACCTTGAAGAGTTTAACACACTTTCTTGGTGACAACCCAACATCAG--TTAAGA-------AACCAGGGACCCACATTCTTGAGACAGCTCTGTACCCGCCTCTGTTAGTGAGAGATGCTCATGAGAGTGAGATGTTCTTTCATTGTGCCCTGAAATTTCTGAGTTTTGACCTTACAAAGGCTCAGTGTAAAAGCCTTATCTGAAAACACGGATGTCAACTCAGGCCTCATCATTGATGCCCCTGGCTAT-TGGCCGGGTGCACCTACAAATAACACAGGGCAGCCCAGGACAGGCCCC---AGAGCCAGGCCTCTCTTGTCAACTCATCTGGGCAGTCCCACAC-------------CATTTCTTA-----------------------------------------GTACCATGAGTTGTATGGGGAGCAAGAG-GGAGGGCACTCTTCTTTTACTGAAGCAGATTGTCAGGTGTTGGAACTCTTGTGTACCTGTCATGTTCATACCT-AGGCCATAGCTGGCAGAATAAAAAGAAGAGGGTTGGAGAACGAGTCTGTGTACTCAGATGTGAAT------TCCAAGACTTTAACTTGTCCTCTGGTTTCCTTCCTTGCTGAAGATTCATACAGATTCTCCTTATGTGCCTAATCTGAA s canFam1.chr34 15583811 1189 + 45232793 GA-----AGATGACAATGTCTGCATCTTGGAGCATTTTCACCTCATTGTGGTGCCCCCGTTAACATGAGGC-CAGACGGAAAGTGACTATTGTGATATTACATTGCTGGAGACCCCAGGCCACTTTTGAGTGGTCCTTCATGCCACATCCCACCCCTTCTTGTCAATCTTCCATCCTTAAATTTCTACCTCAGATATACAGGATACAGGCCCACAT---GTGttataaacatcatc-catagacacctgatgatgtccctaggaagcagatgctagcctggcccccactgtgcaggttaggaaactggggactatgtgagagacacagtgg-gttaggcaggacacagaactgggaaaacaaacagagaaataagggtctaaattcagctctgtc-----tcctcaaagGTAGGAT---TTTACTTGCATTTTCAGAGAGTTGTGGCTATGGCATTTTTGGCTCATTGTGTACAGTTAAAGAGATGACATTGGGG-------TAAGCAGTCATCTGCCAAGAAGGGGCTCTAGATAGGTCTGACTGAAGGAAGGGGCCCAGGTGCTGGAATCTTGAAAAAGTGACCTCACTTCCTTGGTGACAAGCCCACAACTGACTTAGAACTCTGGTAACCAGGAACCTACATTCTAGA-CCTTCCCACTTTTTAGCTCACTTAACTGGAAATGGTCAAGAATACAAGATGTTCTGTTGCTATATTCCTACTTTCTGGTGCTCTGGGCTCAGGAGAGTCTAGAGTGTGAGATTTTCACGTCGCTGTCTATGTCAGCTTGGCCCTCTACTCTGAAACTTCTGGTCATGTGGCGGGAGACACCAACAGGTACCACAAGGCTGTGTGGGACAGCCCACTGGAGAG-CAGGCCACAC-TGTGATCACACCTGATCAGGCCCAGACCTCAGCAGGCCCACACCTCTTACCCCTCATtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtATCCGTGGGTGGAGAGGGGACAGGAGAGGAACATGCCCTTC-TGGGCAGAAACCAGCTGCCAGGTGTTGGAAGCCTGACACATCTTTTGTGTTCAGACCCAAGGTCATAACAGGCAAGATGAGAAGGTGAGTGCTGGGGACCAAGCTCAACTGCGAATATGTTAGTCATGAGCCCAAGAATCT---CTTTCATCTGACTTCC-TCCTTGCCAGATATCTCTTCAGCGGCCCCT------CTTGGTCTGAA a score=10630.0 s hg17.chr7_random 331609 167 + 778964 GAGCAGAAtttcttttcttttcttttctcttTTATtttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttttctttctttctttctttctttctttctttctttcttctttctttctttctttcttctttctttctttc s panTro1.chrUn_random 63623289 150 + 240967748 GAGCAGAGtttcttttcttttcttttctcttttattttctttctttctttc--tctttctttctttctttctttc-ttctttcattctttctttctttttctttctttc---------ttcttccttacttccttctgtctttctttc-----tctttctttttttt a score=11791.0 s hg17.chr7_random 331776 172 + 778964 tttcttctttctttctttctctttc--tttctttctttcttctttttttctctttctttctttctttttctttctttcttcttccttacttccttctgtctttctttctctctttttctttttcttttttcctttttgaggaagcctcgctctgtcacccaggctggagtgcag s panTro1.chrUn_random 63679693 159 + 240967748 tttcttttcttttcttttctcttttattttctttctttctt-------tctctttctttctttcttt--ctttctttcttcttccttacttccttctgtctttctttctctctttttctttttttttttt------tgaggaagcctcgctctgtcacccaggctggagtgcag a score=61501.0 s hg17.chr7_random 331948 581 + 778964 AGAAAAGCAGAATTTCTAGTGGAGGTGTCACA-TACGGTGAAAACAAGGCAGACCACTGACTTTTCTTTGCGTGG--TTTCTAGGCACTT--TTTACAGAGCTGCATTCAGA-----TTGATGAGGAGCTTCTTGATGTGGC--CAACTCCTCCCTCTTTTTGGAAAAAGACCAGGTGCACTAAGCCAGCAACCACAGCCAGCACCGG-GCTGTGGTAAGAGCAGCCACATAGGGGTCTCTACAGACAGAAACC-----CGAGAAGACCGGGACAGACCCAGTACCCAGACTCCAGTATGAAAACTCTCTGGGCTGTGTCCTATGATCTT--CCCATGAGTAACTCATAGTCTT-GATCCAGTGGAATCTG-GCCTTCA---TTAGTCTCAGTGGCAAGTTGGTTATGTGGAAAGTCTCTGTTCACTCACTTGGGTGAATAACAGTAAAGACCTTT-----------------------CTATTGTTTTCACTTTACATTAGGCCATGAGTATTTGTGCCTGTAGCTGCAGTTTGTGTTAGTTT-----CCTACCCCAGGTATCTCCTGCAGCATGCAGCTTCA--GTCCTACCAGACCCTC----AAAACTTAAAAGCGAACACTATTTCTAGGGAGGA s panTro1.chrUn_random 63679852 580 + 240967748 AGAAAAGCAGAATTTCTAGTGGAGGTGTCACA-TACGGTGAAAACAAGGCAGACCAATGACTTTTCTTTG-GTGG--TTTCTAGGCACTT--TTTACAGAGCTGCATTCAGA-----CTGATGAGGAGCATCTTGATGTGGC--CAACTCCTCCCTCTTTTTGGAAAAAGAGCAGGTGCACTAAACCAGCAACCACAGCCAGCACCGG-GCTGTGGTAAGAGCAGCCACATAGGGGTCTCTACAGACAGAAACC-----TGAGAAGACCGGGACAGAACCAGTACCCAGACTCCAATATGAAAACTCCCTGGGCTGTGTCCTATGATCTT--CCCATGAGTAACTCATAGTCTT-GATCCAGTGGAATCTG-GCCTTCA---TTAGTCTCAGTGGCAAGTTGGTTATGTGGAAAGTCTCAGTTCACTCACTTGGGTGAATAACAGTAAAGACCTTT-----------------------CTATTGTTTTCACTTTACATTAGGCCATGAGTATTTGTGCCTGTGGCTGCAGTTTGTGTTAGTTT-----CCTGCCCCAGGTATCTCCTGCAGCATGCAGCTTCA--GTCCTACCAGACCCTC----AAAACCTAAAAGCTAACACTATTATTAGGGAGGA s canFam1.chr34 15585002 581 + 45232793 -AGAAAACATGATTTCTAATGGGAGTGTCCCCTTGTGGCGATGTCCAGGGAGGACCCTAATGTCTCTTGGCCTTGCATATATGGGCACTGTATTTGCAGAGCTGCATCCAGGAGATCTTGGAGGAGATGGTC----TGTGGCTTCAACTAATCCAACTCCCTAGACAATTATCAGGTGCACT-----GGCAAACA-----AGGATTAGTGCTGTGAGAATGGGA-----AGAGGGTTCTCCACAGAAATATACCCCCCACACAAACATGGAGAGAAACCTGGGGCCC-------------------------------TCCCATAGTGCTGCCACATGGGTGTCGCACAGGCCCAAATGCAAAGAGATCTGAACCTCCACGCCTAGCCCC--CAGCCACATGATGAGGTGGGAAGACACTCTTCAACTATGTTG--GAATAGTGCAGAATATATTTAGTGTTTTGAGGGCTTGGTGGGGTTGTTTGTTTTGTTTTTCACAAAGTGATGAGTATCTTTACATTTTACTACTGTTTTTACTATTTCACCTACTCGTCCCAGATATCCTGTGTAGAACCCAGCTCCACTGTCCCTGAAGAACTTCTCCAAAACCTTAAAAATCATCAC----ACTAAAGAGGA a score=2334.0 s hg17.chr7_random 332529 26 + 778964 TTTTGCAGGAAAATGGAGAAAGGGTT s panTro1.chrUn_random 63680432 26 + 240967748 TTTCGCAGGAAAATGGAGAAAGGGTT a score=28921.0 s hg17.chr7_random 332555 210 + 778964 ACACACAAAAAAGG------TTAAACTACTCTATGCATGTTTCTGCAATGTGTTATCTC-AAGAATTCATC-----TCTGTA-GCCCATCAGGGCAGGA-GC--TGGTCTCTCACCTGTTGATAATATTCCATAAGGGAGGTTCTTCCCCACAGTGTTTAGTCTTCCGACGCTGGTATAGCCTGACATGATGACATTCTACTTTCATGTTGGTCATGCTGCAGGGA s panTro1.chrUn_random 63680458 211 + 240967748 ACACACAGAAAAGG------TTAAACTACTCTATGCATGTTTCTGCAATGTGTTATCTC-AAGAATTCATC-----TCTGTA-GCCCATCAGGGCAGGATGC--TGGTCTCTCACCTGTTGATAATATTCCATAAGGGAGGTTCTTCCCCACAGTGTTTAGTCTTCCGACGCTGGTATAGCATGACATGATGACATTCTACTTTCATGTCGGTCATGCTGCAGGGA s canFam1.chr34 15586142 225 + 45232793 ACACAAAAGGAAGGGTGGGATGAAGCCTTTCTATATGTTTCTCTGTAATGCTTCCTCTCTCAGAACTCATCAAATTATTGTAGGCCCAACATGTCATGA-GCTATGTCCTTATAGATCTTCATAGTACTCTATAAATGAGGCCGTCTGCCACAGGATTCAGCCTTTCAAGGCCCTTGGCACTTGACCTGATGCCATTCTCTTGCCATTTCTGCAGTGCTGCAAGGA a score=8935.0 s hg17.chr7_random 332765 97 + 778964 GAATTCTGTGAGTGTCCTAATAGGCTGGAATCACTTGCTAAGGTGAACCCCATCTTTGGTGCTCACTTTTCTGTTATCTTATAATTAGCTTTATTCT s panTro1.chrUn_random 63680669 97 + 240967748 GAATTCTGTGAGTGTCCTAATAGGCTGGAATCACTTGCTAAGGTGAACCCCATCTTTGGTCCTCACTTTTCTGTTATCTTATAATTAGCTTTATTCT a score=1994.0 s hg17.chr7_random 332862 8 + 778964 AAGCAAAT s panTro1.chrUn_random 63680766 8 + 240967748 AAGCAAAT s canFam1.chrUn 90446496 8 - 91062872 AAGCAAAC a score=32030.0 s hg17.chr7_random 332870 348 + 778964 CCATGTCTATTTTATTTATCTGTTTATTAACTTATTTTTATGTATGGAAAAACACAtttttttatttgcttatttatttagagacagggtctccctctgtcatccaggctggaatacagtggtagattggagtgatcatggctcattgcagcctcaaactcttgagctcaaatgattctctcacctcagcctcctgtgccaccatgccctgctagttgattttaatttgttataaagaaagtgtctcattatgctgcccaggctggtctcaaactcctgggcccaagcaattctctcatctcagcctcccaaagcactaggattaaaaacatgagccactgTACTGCG s panTro1.chrUn_random 63680774 348 + 240967748 CCATGTCTATTTTATTTATCTGTTTATTAACTTATTTTTATGTATGGAAAAACACAtttttttatttgcttatttatttagagacagggtctccctctgtcatccaggctggagtacagtggtagagtggtgtgatcatggctcattgcagcctcaaactcttgagctcaaatgattctctcacctcagcctcctgtgccaccatgtcctgctagttgattttaatttgttataaagaaagtgtctcattatgctgcccaggctggtctcagactcctgggcccaagcaattctctcatctcagcctcccaaagcactaggattaaaaacatgagccactgTACTGTG a score=12820.0 s hg17.chr7_random 333218 53 + 778964 CTGTGCCTACTTCAAAGGACTGAAAATAAAAAATAAATAAATCTTTGCCAAAT s panTro1.chrUn_random 63681122 53 + 240967748 CTGTGCCTACTTCAAAGGACTGAAAATAAAAAATAAATAAATCTTTGCCAAAT s canFam1.chrUn 90446504 52 - 91062872 CTGTGTCTACTTCAAAAGACTGGAAATAGAAAA-AAATAAATCTTTGCCAAAT a score=315372.0 s hg17.chr7_random 333271 3591 + 778964 TAAAAAAcaaagcaatagtttccaggtcttagataaagacaattctctgtcatgaagaatgacagaaggcttatttagctgttaaaatgatttgcttatatttcaaagaagcagagaaaaaaaggtacatgtaaaagtgttccaggccactcatggtggttcatgcctgtaatctgaacatttggggaggccaaggcatgaggataccttcaagccaaatgtttgagtccagtacaggcaatatggtgaaattctgtcactacaaaaaaataaaataaatatggctgggcatgttggctcacacctgtaatcccagcactttgggagtctgaggcaggtggataatgaggtcagggggtggagaccagcctggccaaaatggtaaaacccattctctactaaaaataataataacaaaaaattagccagacatggtggtgtgcgcctgtaatcccagctactcaaaaggctgagacaggagaattgcttgaatctgggaggtggaggttgcattgagacaagatcatggcactacactccagcctagcccacagagca-agacactgtcttgaaaaaaaataaaaacaaaaataaataaagctagccaggcatggtggttcatgcctatagtcctaggtaattaagcggttgatgcaggaggactgctcaaacccaagaggttaaggttaccgtgagctatgattatgccgttgcacttcaggctaagtaaaagagtaagattctgcctcaaaaaattactaattaaagttttccagattacattgtttaagaaaaaggaaaagaaaaaaatcttttttttattttcaaatgggagaatagagcctctcatttctaatttgtattgccttCTGCAAAAACTTAGTCTAGGCCCATGGTCTTGAACTACTGGACATCTGAATTTTGGTAGGTGCTGGATTCAGGCAACTGAGGGGTGGCCTTGGGCACACTGTGTGCACATAAAAGAAAGGGTTTGAGGTGAACTAAAAGGTAAAAGAGGGGAAGGTGCTATTAAGAAACCAGAAgtgagagactgtacagggttggtgggaggactggttcatgctacagacactgacccaggt-gaaacttttct-ctgagttatttctatgttcatgcaggaagacgagattatgatcaggtggcacagaaatctgcgatggtgaaaaaaccaggttgccactgcagattcggtgtctgaagtagaacatatgccaggggtcttgtaggcacgtgtgtgggtttttggtgggaaagtctatgaggaaaggtaggatgggcaacaatcttgatgcc-aaagccttgtcctgagaggggcttgaccacgtcaacatgcagtgtgtatgttcagtgggtgaaaaacatgtggtggcctcaggttggcaggagggtagaaggcatctgttctcagaacttcttccctcagagtcgtcggtccttcttaccatgggaggatgcctggaaccacagggcagtgcatggcgtagcagcctgtgtgcagagcagagcctaccttccccgagacacctggagtctctctccagcaaaggcccc--CACATtgtc-tttctccttac-aacacttttgatcc-taaatgtgtaaagttccctgaaaacccactgcttctccaacacccatttcttgccccaaaatttaattctgacacaacttagagttcgcacagatcccacaaattcagggctaagtcccacatca-cccctctcactgcagaggttagtcacatgtcccataagcccatctatacttctgagctactgcctataaatctgagactcccataaaccccttttcaagttaa-ataatttgatagagttactcaaaaaaactcaacaaataagtctaattatatttaccactttattataaaaatacaactcagaaactgacaaatgaaagagatgtctaggaaaaggAACAGTTGTGGGTGAAGGTAAtcctggaaatagctatatttaaagaaattcccccattctttgtgttctcaaagaacagcttagtgaagagaaacgtgcttcccattatgactttgtggatgttcccccccccccttttttttaacctatcacaaagacggacacagattacaaattcctatttttaaaaatgaacaaccattctgtaatttagtcttcagtggtcaaaacagagtacttgttaacaaaactttgcttgttccccttcttccctcagcccctgaactttgactcacccacagcctcagagaacctacaacccatatttatacatatccctcct-aagaacaggctgacttcaagatgaaacattatcttatctgggatctgattttgctaccctccatcctgtgcttcctttccaaccttctttgtaaacttattttctcctccctatgaaataaaacccttttccacctaacctttgagatcctcaaagatctaatcatttgtactttttccttgttacaaCACTTCTTAAGTAACTTCTTAGacaaagtctataaacagtctcaggacaataaaaactccattctagaaagaatatcccaacttttcttcaatctcaaccccaactgcatctgcctgtcaacttccagcttaccaaagctctgtatcttctgacagtgacaaaggctccttctatggttggtgtgagcagactttgatgtctgcagggcagacacccaggaataatcaactgggccttcagtggcccccttttgcagggtcaacgttagccttagcttttagtcaacggtctaagacttctacttaccagttaaagtcattcaattagttttcaatttaaaaaatacttcatgtt-tgaaga-atccagcaaaaatcattcaaatctaaggt-ttaaaagagaggaaattatgg-tcgggcatggtggctcatgcctgtaatccctgcattttgggaggctgaggcgggcagattacctgaggtcaggagttcgagaccagcctcactaacatgaagaaacacagtctctactaaaaatacaaacttaaacgggggtggtcgtgtattcctgtaatctcagttacttgggaggccgaggcaggagaattgcttgaacccgggaggtggaggttacagcgagccaatatcgtgccattgcactccagactgggcaacaagagtgacactaagtctaaaaaataaaattaaaattaaaaaagaaagttataaggggcttacattttataactcaacaagaaaagccaaagtatctatccctttcagaaaataaacatgtaatttaattatgttcataacaaatcatttagtaaAC----AATCATATGTGAACACTTCCAGGCGGTGCCAAGTCCCAGCTCCTAAAACTTAGCGTTACCCTCAAACACCCAGATGACAGCATATGGAACAGAGATACTCACTATCAGAAGTTCTCTGTTTTG-AAAAAAGAATAACTGATGTGATAAATTTATGTAATTTAACAATTAATCTACCTCACGTGCTTGTAGGTATGTATTCA-TTTCCTACCACCGTAGTGGAAGAGAGACTATCCCTATCAATACACCTGGTAACATTCCCAACAGTAAGC-CGTGAGATTC--TGC s panTro1.chrUn_random 63681175 3612 + 240967748 TAAAAAAcaaagcaatagtttccaggtcttagataaagacaattctctgtcatgaagaatgacaaaaggcttatttagctgttaaaatgatttgcttatatttcaaagaagcagagaaaaaaaggtacatatgaaagttttccaggccagtcatggtggttcatgcctgtaatctgaacatttggggaggccaaggcatgaggataccttcaagccaaatgtttgagtccagtacaggcaacatggtgaaattctgtcactacaaaaaaat-aaataaatatggcagggcatgttggctcacacctgtaatcccagcactttgggagtctcaggcaggtggataatgaggtcaggggttcgagaccagcctggccaaaatggtaaaacccattctctactaaaaataataataacaaaaaattagccagacatggtggtgtgtgcctgtaatcccagctactcaaaaggctgagacaggagaattgcttgaacctgggaggtggaggttgcattgagacaagatcatgccactacactccagcctggcccacagagcatagacactgtcctgaaaaaaaataaaaacaaaaataaataaagctagccaggcatggtggttcatgcctatagtcctaggtaattaagcggttgatgcaggaggactgctcaaacccaagaggttaaggttacagtgagctatgattatgccgttgcacttcaggctaagtaaaagagtaagattctgcctcaaaaaattactaataaaagttttccagattacattgtttaaggaaagggaaaagaaaaaaatc-tttttttattttcaaatgggagaatagagcctctcatttctaatttgtattgccttCTGCAAAAACTTAGTCTAGGCCCATGGTCTTGAACTACTGGACATCTGAAATTTGGTAGGTGCTGGATTCAGGCAACTGAGGGGTGGCCTTGGGCACACTGTGTGCACATAAAAGAAAGGGTTTGAGGTGAACTAAAAGGTAAAAGAGGGGAAGGTGCTATTAAGAAACCACAAgtgagagactgtacagggttggtggaaggactggttcatgctacagatactgacccaggtagaaactttgctcctgagttatttctatgttcatgcaggaagacgagattatgatcaggtggcacagaaatctgggatggtgaaaaaaccaggttgccactgcagattcggtgtctaagatagaacatatgccaggggtcttgtaggcacgtgtgtgggtttttggtgggaaagtctatgaggaaaggtaggatgggcaacaatcttgatgccaaaagccttgtcctgagaggggcttgaccacatcaacatgcagtgtgtatgttcagtgggtgaaaaacatgtggtggcctcaggttggcaggagggtagaaggcatctgttctcagaacttcttccctcagagtcttcagtctttcttaccatgggaggatgcctggaaccacagggcagtgcatggtgtagcggcctgtatgcagagcagagtctaccttccccgagacacctggagtctctctccagcaaaggccccCACACATTGTCttttctccttacaaacacttttgatccataaatgtgtaaagttccctgaaaaccgactgattctccaacacccatttgttgcccaaaaatttaattctgacacaacttagagttcgcacagaccccacaaattcagggttcagtcccacatcaccccctctcactgcagaggttagtcacatgtcccagaagcccatctatacttctgagctactgcctataaatctgagactcccataaaccccttttcaagttaatataatttgatagaattactcaaaaaaattcaacaaataagtctaattatatttaccactttattataaaaatacaactcagaaactgacaaatggaagagatgtctaggacaaggAACAGTTGTGGGTGAAGGTAAtcctggaaatagctatatttaaagaaattcccccattctttgtgttctcaaagaacagcttagtgaagagaaacgtgcttcccattatgactttgtggatgtt--cccccccctttttttttaacctatcacaaagacggacacagattaaaaattcctatttttaaaaatgaacaaccattctgtaatttagtcttcagtggtcaaaacagagtacttgttaacaaaactttgcttgttccccttcttccctcagcccctgaactctgactcacccacagcctcagagaacctacaacccatatttatacatatccctcctaaagaacaggctgacttcaagatgaaacattatcttatctgggatctgattttgctaccctccatcctgtgcttcccttccaaccttctttgtaaacttgctttctcctccctatgaaataaagcccttttctacctgacctttgagatcctcaaagatctaatcatttgtactttttccttgttacaacaCTTCTTAAGTAACTTCTTAGacaaagtctgtaaacagtctcaggacaataacaattccattctagaaagaatatcccaacatttcttctatctcaaccttaactgcatctgcctgtcaacttccagcttaccaaagctctgtatcttttgacagtgacaaaggctccttctatggttggtgtgagcagactttgacgcctgcagggcagacacccaggaataaacaactgggccttcagtggcccccttttgcagggtcaacgttagccttagcttttagtcaatggtctaagacttctacttaccagttaaagtcattcaattagttttcaatttaaaaaatacttcatgttatgaagagatccagcaaaaatcattcaaatctaaggtgttaaaagagaggaaattatggcccgggcatggtggctcatgcctgtaatccctgcattttgggaggctgaggcgggcagattacctgaggtcaggagttcgagaccagcctcaccaacatgaagaaacacagtctctactaaaaatacaaacttaaacgggggtggtcgtgtattcctgtaatcccagttaattgggaggctgaggcaggagaattgcttgaacccgggaggtggaggttgcagtgagtgaatatcatgccattgcactccagactgggtaacaagagtgaaactaagtctaaaaaataaaattaaaattaaaaaagaaagttataaggggcttacattttataactcaacaagaaaagccaaagtatctatccctttcagaaaataaacatgtaatttaattatgttcataacaaatcatttagtaaACAATTAATCATATGTGAACACTTCCAGGAGGTGCCAAGTCCCAGCTCCTACAACTTAGCATTACCCTCAAACACCCAGATGGCAGCATATGGAACAGAGATATTCACTTTCAGAAGTTCTCTGTTTTGAAAAAAAGAATAACTGATGTGATAAATTTATGTAATTTAACAATTAATCTACCTCACGTGCTTGTAGGTATGTATTCATTTTCCTACCACCGTAGTGGAAGAGAGACTATCCCTATCTATACACCTGGTAACATTTCCAACAGTAAGCTTGTGAGATTCTATGC a score=33407.0 s hg17.chr7_random 336862 250 + 778964 TTGAAATCACCTCTCAGACAAATAAAAAACAGTCCTGGGAAATGTACGACACTCATTCTGCTAAAGAAATAGGCAAGTAACAATTTTTAACAAGTGAAATATATTACTA-CTTAA-TTTTATTCAAAATTCA-CCAACTTAATGTGCTTTATAAATATTTT-CATGCCT---TTCAAGCTCTACTGATAAAACATAGtttacagttaattaaaaagtgaagttaaagtaagtacaaaaacattttcaaggtgacaaa s panTro1.chrUn_random 63684787 253 + 240967748 TTGAAATCACCTCTCAAACAAATAAAAAACAGTCCTGGGAAATGTACTACACTCATTCTGCTAAAGAAATAGGCAAGTAACAATTTTTAACAAGTGAAATATATTACTA-CTTAGTTTTTATTCAAAATTCACCCAACTTAATGTGCTTTATAAATATTTTCCATACCT---TTCAAGCTCTACTGATAAAACATAATTTACAGTTAATTAAAAAGTGAAGTTAAAGTAAGTACAAAAACATTTTCAAGGTGACAAA s canFam1.chr20 8788708 243 - 61172541 TTGAAACCACCC-----AGAATTAAAGAATAGGCCTCAAAAACTTACAACACACTCTCTGGACAAGAAAAAGTGAAATTAAAATCCTTAACAAATGGAATGTAATACTAGAATATCTTTTTTCTGAAATTCACCACATTTTTACCTCTTTGGAAATATTTT--ATACTTTTCTTCAAGCTCtattaattaaataaattttatCCCT-ATTGGAAAAAGAAAT--AAATTAGTAC----ATCTTTTTAAAATGACAAA a score=18076.0 s hg17.chr7_random 337112 199 + 778964 attagaaggtgacagtgccgattgaaacacagacatatcagacccaagggtcAAGTCAAGCCATTCTATTACTTGGGATATTTTCCCCACTCACATCTGGTTCAGTGAAGTGGGTCATGACCATCCTACCAGGAGCCGCTACCCTGTGCTCCTCTGTGTCCCTGAGGTGCATTTTACTTTGCAGGTTTTTGCACTGCCT s panTro1.chrUn_random 63685040 199 + 240967748 ATTAGAAGGTGACAGTGACGATTGAAACACAGACATATCAGACCCAAGGGTCAAGTCAAGCCATTCTATTACTTGGGATATTTTCCCCACTCACATCTGGTTCAGTGAAGTGGGTCATGAGCGTCCTACCAGGAGCCGCTACCCTGTGCTCCTCTGTGTCCCTGAGGTGAATTTTACTTTGCAGGCTTTTGCACTGCCT a score=10003.0 s hg17.chr7_random 337311 67 + 778964 CACTAGGTTGGGTTTCTTTGTCCTTTGAAATATTTTCTCTCCCTTCACCAATCTGAGAACATTTTTT s panTro1.chrUn_random 63685239 67 + 240967748 CACTAGGTTGGGTTTCTTTGTCCTTTGAAATATTTTCTCTCCCTTCACCAATCTGAGAAAATTTTTT s mm5.chrX 85906926 67 + 160634946 CATAAGGTACATTTTCTTTTTTCTTTGGCATAGTTTATAGAACTTTATCAACACTGAAACATTTTTT a score=26470.0 s hg17.chr7_random 337378 313 + 778964 CCTCAATATCAGCATCCATTTGCCTGGCCTGCAATGTGTCTCTAAGGAATGGAAACTAAGCTTTGGGGTAAGAAAATCTTAATGACCTAATGGGTTTGCTTTTAGCGCAAGGGTATACCTAGAGATTCCTTCCAGGCA-----CATCTCAAACAACCACTCCACAGAGAGGCTGCATTCCCATACCTTGGGCTGTTCCCTGAGAGGAGATGACACAAGGGATGCTATTTACTAGACACTTCAAGAGTCATGGCCACTGTTGGCATCTT-GGGGAATCCTCAAACAGTTTTGAAATTCAAAACCAAGAAAATAACAGGAT s panTro1.chrUn_random 63685306 314 + 240967748 CCTCAATATCAGCTTCCATTTGCCTGGCCTGCAATGTGTCTCTAAGGAATGGAAACTAAGCTTTGGGGTAAGAAAATCTTAATGTCCTAAGGGGTTTGCTTTTAGTGCAAGGGTATACCTGGAGATTCCTTCCAGGCACAGTGCATC-----CAACCGCTCCACAGAGAGGCTGCATTCCCATACCTTGGGCTGTTCCCTGAGAGGAGATGACATAAGGGATGCTATTTACTAGACACTTCAAGAGTCATGGCCACTGTTGGCATCTTGGGGGAATCCTCAAACAGTTTTGAAATTCAAAACCAAGAAAACAACAGGAT a score=55374.0 s hg17.chr7_random 337691 455 + 778964 GGCTG--AGGATGTATTGCCCTGTGAAGTTTCCAAAATGAAACCTGAACCC-AAAGGCTTTCTGATGGGGTGTCTGTGCCAAGAGAAGTTTAAACAAAGGGGCACAA-AGGTTTTCCGCTTTTTA-TTTATTTTTTTTACAGTGGGGTGTCAGGGGATTATTCTCTGCTTTCATCTCCTGTAAAATGT-------------------TTACAAATGAG------------AAAAAATTTTTTTAAATGACATCCACTGCTTTTTGACAAAAAG---AAGAATTGAAATACTGTGTCTGAAATATACAATAAAG------AACAGTTGATA---ATGTTGTGAATTATGGAAGGTTAGTTAGTGTTGGTGAGTGTCAGGAAAGAACTGGAAATTTAAAATCTGATTGCAAGCC------AGAGTTAGGCTGGGGCAACAGGGAGTTAGATTTGAGTCTCTGCCTGCCACACATTTGGAAAATGCATGAGAAAACTAGTTCCCTTTTGGAG s panTro1.chrUn_random 63685620 454 + 240967748 GGCTG--AGGATGTATTGCCCTGTTAAGTTTCCAAAATGAAACCTCAACCC-AAAGGCTTTCTGATGGGTTGTCTGTGCCAAGAGAAGTTTAAAGAAAGGGGCACAA-AGGTTTTCCGCTTTTTATTTTTTTTTTTTTACAGTGGGGTGTCAGGGGATTATTCTCTGCTTTCATCTCCTGTAAAATGT-------------------TTACAAATGA-------------AAAAAATTTTTTTAAATGACATCCACTGCTTTTTGAGAAAAAG---AAGAATTGAAATACTGTGTCTGAAATGTACAATAAAG------AAC-GTTGATA---ATGTTGTGAATTATGGAAGGTTAGTTAGTGTTGGTGAGTGTCAGGAAAGAACTGGAAATTTAAAATCTGATTGCAAGCC------AGAGTTAGGCtggggcaacagggaggtggatttgagtctctgcctgccacacatttggaaaatgcatgagaaaactagttcccttttggag s canFam1.chr20 52381360 479 + 61172541 GGCTGGCAGGACAGATCACCCAGGAAACTTTCAAAAGAGGAACCTCCCCCCAAAAGGACTTCCCACAAGATGTCTGTGCCCAGGAAAAGATCGTGGGAGGAGAGTAACAGGATTTC--------A------------TAAAATGTAGTTACAGGTGGTTATTCTCTGCTTGCTTCTCACGTAAAATATCCAGACAAAAATATAAACATTTAAAATGAGCCGTCCaaaaaaaaaaaa-------aaaaaaaaGCCGTCACTGACTGTGAAAACGCTAAACGATTAAAACACTGTCTGCTAGAATTGCACCAAGGAAGACAAACAGTTGATACTGATGCTCTGAACTGGACAGGGGAAGCTGGCGTCTGGGGACGCGGGGCAGGATCTGGAAA--CAAGCATTTATTGCCAGTCCCAGGAAAGGATAGGCTTGGG-GACAGGGTCGTGGATTTGATCCTCTGCTTCCCAAACATTTGGAACACTCAGGAGAAAACGGGCGCCCCCCAAGAG a score=69091.0 s hg17.chr7_random 338146 872 + 778964 tgttaaaataact-aaaaaaca-ggtgattatgt-tgaggtggctctagtgtcctgagctcTGAGTGgagag-acagg--ccaaggcctccg-tacttccaaaaa--gctgccca-ttcttctcca-gctgtgcacctga-ttagatagtttccact-ccaagacccatgatt-ggatgtagttcaatt-ccctaccctgccgcctcagaccatgagtgacatatgtgatttgacactgggttgaataaagcaagaattataggtttttcctggatccttttctggcagggcttcctctgtgaactagaaactggcccTGCCTGT-AAAATATTTGCATTTACATTTGTATGTAAGATTATTTGTATTAATGAATAATATATATGTGTTATTCATATATGGAATCAATATAATGACAATTGTTTTAAAATTTCAGATGTTTTACTTTCCTGGCACATCCAGGTTTTAGAGCAGGCAGCCT-GAGATTTCAAAAGGGAGGCAATTCTCTAAGAAATAATATGAGAGGCACAAGTGAATTTTAAATATTCTGGTAACTACTTTTTAATAAATATAccgggcatgcttccctgtgcctgtaggtcgaactattagggagactgaggtgggaggatcacttgagaccaggagtttgagaccagcccaggcagcatagagaaagccatctctacaaaaaaaaaaaaaaaaaaaaaaaaaaaaatttgaaaaattagccaggcctggtggtgcatgacttcagtcccagctactcagaaggctggagctggaggatcacctgagcctgggaggtcaaggctgcaatgaaccatgatcacacaactgtactccagcctggctgacagagcaaaaccctgtctcaaaaaaCTGATCT s panTro1.chrUn_random 63686074 874 + 240967748 tgttaaaataactaaaaaaaCAGGGTGATTATGTGTGAGGTGGCTCTAGTGTCCTGAGCTCTGAGTGGAGAGAACAAGCCCCaaggcgcccgttacttccaaaaaaggctgcccatttcttctccaggctgtgcacctgatttagatagtttccactcccaagacccatgattgggatgtagttcaattcccctaccctgccccctcagaccatgagtgacatatgtgatttgacactgggttgaataaagcaagaattataggtttttcctggatccttttctggcagggcttcctctgtgaactagaaactggccctcccTGTAAAAATATTTGCATTTACATTTGTATGTAAGATTATTTGTATTAATGAATAATATCTATGTGTTATTCATATATGGAAGCAATACAATGACAATTATTTTAAAATTTCAGATGTTTTACTTTCCTGGCACATCCAGGTTTTAGAGCAGGCAGCCTCGAGATTTCAAAAGGGAGGCAACTCTCTAAGAAATAATATGAGAGGCACATGTGAATTTTAAATATTCTAGTAACTACATTTTAATAAATACAATGGGCATGCTTCCCTGTGCCTGTAGGTAGAACTATTAgggagactgaggtgggaggatcacttcagaccaggagtttgacaccagcccaggcagcatagagaaagctatctcttcaaaaaaaaaaaaaaa---------------ttgaaaaagtagccaggcctggtggtgcatgccttcagtcccagctactcagaaggctggagctggaggattacttgaccctgggaggtcaaggctgcaatgaaccatgatcacacaactgcactccagcctggctgacagagcaaaaccctgtctcaaaaaaCTGATCT a score=25366.0 s hg17.chr7_random 339018 201 + 778964 CTGGAAAGGCAATTTGTTTTTCTGCAATGTAGCCAAGCAGCTAAGTATGTAT-TGAAGCCATCCTTTAATTTTTAACAGGGCAAGAAAGCTTTCTAAGACCCCGAACTCCAGATATGCGATGGGGCAAATCCTGAAGCGTACATGGCTATCTCTCACAGCTAAAGCATCCCTCACCCCTATCcagcgcttcttacccctggc s panTro1.chrUn_random 63686948 201 + 240967748 CTGGAAAGGCATTTTCTTTTTCTGCAATGTAGCCAAACAGCTAAGTATGTAT-TGAAGCCATCCTTTAATTTTTAACAGTGCAAGAACTTTTTCTAAGACCCCGAACTCCAGATATGCGATGGGGCAAATCCTGAAGTGTACATGGATATCTCTCACAGCTAAAGCATCCCTCAACCCTATCcagggcttcttacccctggc s canFam1.chr35 8085728 166 + 29506910 CTAAGAAGACATTTCCTCCTATTGTAGTTTAGACAAATAGCTGAGT---TATCTGAAGTAGTCCTTTGA-TTTTAACAGGGCAGAGCTGTTTTCTAAAACCCC--------------------------------AGAGCGCACACACATCACTTACAGCAGATGCATCCCTGGCCTTGAATCTGTGGTCCTCACCACGGGC a score=2578.0 s hg17.chr7_random 339219 29 + 778964 gcaagagaatcacctgcggggaggaaaac s panTro1.chrUn_random 63687149 29 + 240967748 gcaagagaatcaccggcggggaggaaaac a score=77987.0 s hg17.chr7_random 339248 587 + 778964 tttcaaaatcccttaaacccaagttgtaaccgcacaactaaatcagaatccttggagctggatctgaaaaaaatatggttgaaagtcgtgcaggtgattacaatgtgtaggcaagccagaaaaccaTGGCTTT-AACGAGCAGCTTTT---------GTTAGAAATGATTTCTCCAATGAA-TGTGAAAACGTTTGCTGCTGAATTGTGACCTTTCCATTTTACCTGCT-TTTCCTGCAAAGTATATTTTGCAGACCCAGGCTG-GCTTCTCCTTCT------GTT-CCTGGTTCACCCAGTGCCGTGTGTGCTCAGTGCATCCTGTGCACGGGTCACTGT-----GTGCCCTGGCCTGGGTGAGCATCATTCTTCGG---GGAGAACCTTGATG--AAAACAAAGCTGCATTCCAAAAAGTTAAAACCATGCTACTTACTGTGTTGAAGTAAAAATTAAAAGACCCAGGGGGGCTCACCCAAAAGTTAAAACATAAATAAATAACTTGGAACATTAACATACACCTGATGATGTCCTGAGTGAACACGCCCCACTTG-------AAAACAAAACAAAACATTGCTATTATTCTAAAATATTAATTTAGGATTGTTATGCAAAC s panTro1.chrUn_random 63687178 579 + 240967748 tttcaaaatcccttaaacccaagttgtaaccgatcaattaaatcagaatccttggagctggatctgaaaaaaatatggtttaaagttgtgcaggtgattacaatgtgtaggcaagCCACAAAACCATGGCTTT-AACCAGCAGCTTTT---------GTTAGAAATGATTTCTCAAATGAA-TGTGAAAACTTTTGCTGCTGAATTGTGACCTTTCAATTTTACCTGCT-TTTCCTGCAAAGTATATTTTGCAGACCCAGGCAGTGCTGCTCTCTCT------GTTCCCTGATTCATCCAGTGCCATGTGTGCTCAGTGCATCCTGTGCAGGGATCACTGT-----GTGCCCTGGCCTGGGTGAGCATCATTCTTCGG---TGAGAACCTTTCCG--AAAACAAAGCTGCATTCCAAAAAGTTAAAACCATTCTACTTACTGTGTTGAAGTAAAAG----------CAGCGGGGCTCACCCAAAAGTTAAAACATAAATAAATAACTTGGAACATTAACATACACCTGATGATGTCCTGAGTGAACACGCCCCACTTT-------AAAACAAAACAAAACATTGCTATTATTCTAAAATATTAATTTAGGATTGTTATGCAAAC s canFam1.chr35 8086108 605 + 29506910 TGCtgaaattcccagaacccaaattacaacagatcaatcaaatccaaatccctggagtgggacctgggcatcagcatttttagagctcttcaggtgatcacagtgtctgaccaaggctgaacagcactgCTTTAAACCAACATCACTGGGTCAACTAGTTGCAAATAGTGGATTAAATAAAGTGTAAAAATGTTTGCCGGTGAG-TGTAACCTTTCGGTCTTATCTACCATCACCTGCTCACTCTCCTGTGCA----CAAACAA-GCCTCTTGTACTAGGTTGGTT-CCCG-TCCACACAGCTACACGAGTATGGTGTATACCACGTGCAAGG--CACTGCGCTAGGTGTCCTGGTGCTGGTAAACA----TCTTTGGAAATGAGGACTTCTCTGGAAAAAAAAAAATGCATCATAAAAAATCAAAACCATGTGACTTACCAAATTGAAGCAAAAATAGAAAGAC-CCTAGGAACTCACCCAAAGTTTAGGAC----AGTAATACTTTGGAATATTAAAATCCACTTGACGATGCCCTGAGCAAACATGTTGTACATGTTAACACAAAACACAACAAAATGCTGCTGTTATTCTGCGATATAGAGTTAGGATTTTTATGCAAAT a score=4456.0 s hg17.chr7_random 339835 24 + 778964 ATGCACTCtttacatttttattga s panTro1.chrUn_random 63687757 24 + 240967748 ATGCACtctttacatttttattga s canFam1.chr35 8086918 24 + 29506910 ATGTAGTATTTAAATTTTAATTAA a score=19562.0 s hg17.chr7_random 339859 146 + 778964 taaata---------------------------acatgcatacagcaatataggcacaaagcatttaggg-----------aatgtttgat-gaattattactaaataaatacacttgtgtatctaa------gaatcagatTTGTTCATGC-CCCTGA----CACTTTCCCCTTCC--------CAAAGGTAACCAAGACCTT s panTro1.chrUn_random 63687781 158 + 240967748 tgtata---------------------------acatgcatacagcaatataggcacaaagcatttagggcacaaaatggaaatgtttgatggaattattactaaataaatacacttgtgtaactaa------gaatcagatTTGTTCATGC-CCCTGA----CACTTTCTCCTTCC--------CAAAGGTAACCAAGACCTT s canFam1.chr35 8087110 192 + 29506910 CAAATAAGTCCTAAAAATAATTGTTTAATTGACatatgcatacagaaatatatgcagacacaattcatgt-----------aaagctcagt-gaattattacagactgaatacacttgtatagccaAGAGCTTGAACCAGCTTCGTTCAGGCTTCCTGATAATCACTCTCCCCCTCCCTCTGTCACAAAGGTAACCGATGTATt a score=32194.0 s hg17.chr7_random 340005 364 + 778964 AAGAGCTAAGTGTAGATAAACTTTGTCATTTTGTACAAGTGTTTTATTACAGATCACTAAAAAC--ATACACAATACAAAAAAAGTATAacagaccagtcacccagctttaacagctgctagtcatgtgtcatttttgttttatctatacttccaGCCATGCCCCCACCCCCAATTTCATTATTTTTTAGGCTTTTTGGATAAAATGTATATTCATTGCAAGGTACAATGCGAACTGTAAATAGTAGagagatggggttttaccatgttggtcaggctgttcttgaactcctgacctcaggtgatccactctcttccacctcgcaaagtgctgggattacaggcgtgagccaatatactcggccTG s panTro1.chrUn_random 63687939 366 + 240967748 AAGAGCTAAGTGTAGATAAATTTTGTCATTTTGTACAAGTGTTTTATTACAGATCATTAAAAACatatacacaatacaaaaaaagtataacagaccagtcatccagctttaacatctgctagtcatgtgtcatttttgttttatctatacttccagccatgcccccacccccaatttcattattttTTAGGCTTTTTGGATAAAATTTATATTCATTGCAAGGTACAATGCGAACTGTAAATAGTAGagagatggggttttaccatgttggtcaggctggtcttgaactcctgacctcaggtgattcactctcttcggcctcgcaaagtgctgggattacaagcgtgagccaATATACTCAGCCTG a score=5730.0 s hg17.chr7_random 340369 31 + 778964 AGAATTCATATTTCTAATAAAGTACAAATCC s panTro1.chrUn_random 63688305 31 + 240967748 AGAATTCATATTTCTAATAAAGTACAAATTC s canFam1.chr25 40315894 31 + 54436876 AAGATTCGGGTTTTTAATAAGATACAGGTCC a score=15723.0 s hg17.chr7_random 340400 146 + 778964 ATAGGGCA-----CATGACAACTGCAATGTCTATCTACAGTAAAAACAGTTTGATGAATAAAATGAAAGGCAATTGACTTAAGGTGGGAAAAA---AACAATCAAAGCATGGGTACTATGTGCCATCTGTAGGAGCATTTGGTTAAGAATAACA s panTro1.chrUn_random 63688336 146 + 240967748 ATAGGGCA-----CATGACAACTGCAATGTCTATCTACAGTAAAAACAGTTTGATGAATAAAATAAAAGGCAATTGACTTAAGGTGGGAAAAA---AACAATCAAAGCATGGTTACTATGTGCCATCTGTAGGAGCATTTGGTTAAGAATAACA s canFam1.chr25 40316102 144 + 54436876 ATAAGGTACAGATCATACCAACCTC-CTTTTTATTCCCAG-ATAAAC--TTTGATGAATAAAA------ATAATTTACAAAATGTCTTCAATGCTTAAAAGTTAAGATACCTGCATAATATGTCAAATTTGGAAGaattttattaataatgaaa a score=10699.0 s hg17.chr7_random 340546 118 + 778964 AACAAACCAGTTTTATTGTTTTAATAACCGAAATTGGCAAAATTTCTAGTTTTTCTTTCATAGGAATGCTCTTAGCAAGAAAAAATTTTCATATGGTGAGAGCAAAAATGACAACCAT s panTro1.chrUn_random 63688482 118 + 240967748 AACAAACCAATTTTATTGTTTTAATAACAGAAATTGGCAAAATTTCTAGTTTTTCTTTCATAGGAATGCTCTTAGCAAGAAAAAATTTTCATATGGTGAGAGCAAAAATGACAACCAT a score=23728.0 s hg17.chr7_random 340664 213 + 778964 TTGCAAGTAAATGTCTT-------------ATGAAATTAAGTAGCAGATATCAAGCTCATGA-------CCTTCAGATTGTTACCCCTAACTCAATCATTTACATAGCAAGTGCAGATAATTTTCATAGTTCCCCATTAAAATTATACTTTACTCCC--CTTACAAATTGTGACT-GTTTTTAAATAAAGTTCACTAACTAAAATTTTGTATATGACATATGATAAATTTCCCTTC s panTro1.chrUn_random 63688600 213 + 240967748 TTGCAAGTAAATGTCTT-------------ATGAAATTAAGTAGCAGATATCAAGCTCATGA-------CCTTCAGATAGTTACCCCTAACTCAATCATTTACATAGCAAGTGCAGATAATTTTCATAGCTCCCTATTACAATTATATTTTACTCCC--CTTACAAATTGTGACT-GTTTTTAAATAAAGTTCACTAACTAAAATGTTGTATATGACATATGATAAATTCTCCTTC s canFam1.chr25 40316758 228 + 54436876 TTTtaaataaattaattaaataaattaaaaataaaaataaataaaAACTACACACCACATAGGTGGGTCCTTTCACGGATTTTATCAAAATGTAATCATTTGCAGACCAAATGCAGA-----TTAATAGTATTCTATTTAGATTATAGTTTAAAACCTACTCACACAACTTGACTCATTTTTTAACAAAACTAATTA---AAAATAGTTCATATTCCAGTTTAATAAGTTCCTTTC a score=2324.0 s hg17.chr7_random 340877 34 + 778964 AAGTCACCTTATATTTACTTA-ATTGTG-TTAGCCA s panTro1.chrUn_random 63688813 36 + 240967748 AAGTCACCTTATATTTACTTATATTGTGTTTAGCCA a score=11205.0 s hg17.chr7_random 340911 120 + 778964 GTGTCTGTCTACCTCCCAACAATAC--TTTGGGATTCTCCCTCCATTTGCACAGGCA-TCATAGC-TGGGGAACAGGGATTCAAAAGACCCAG-----GCTGTTCCCTACATATGTTTCCTCCTCAGAC-- s panTro1.chrUn_random 63688849 122 + 240967748 GTGTCTGTCTACCTCCCAATAATAC--TTGGGGATTCTCCCTCCATTTGCACAGGCACTCATAGCGTGGGAAACAGGGATTCAAAAGACCCAG-----GCTGTTCCCTACATATGTTTCCTCCTCAGAC-- s canFam1.chr25 40317788 119 + 54436876 GTGTCTGCATGTGTCCCCGAAGTGCTGTCTGGGATT---CCAGCATCTGCACACATG-CCA-AGC-TGGAGAA-----GCACTGCAGAACCAGAAACAGCTGCCTCTTACATCTTTGTCCTTGTC-GATGC a score=2217.0 s hg17.chr7_random 341031 65 + 778964 ATCAGTT--AATCAGT--CAATCAAGTCAAGTGAGAGTGGAGG--CCATGTATTCCCTC---------TTATTCTTGGGC s panTro1.chrUn_random 63688971 66 + 240967748 ATCAGTT--CATCAGT--CAATCAAGTCATGTGTGAGTGGAGGC-CCATGTATTCCCTC---------TTATTCTTGGGC s rn3.chr16 74704318 75 + 90224819 ATCAGTTTGAAACAAT--CTGGCAAGTC---TGAGTAGGGAGGTGGCATCTGTTCTTCAGGTGGCAGGTTATTCTCCATC s canFam1.chr25 40317907 68 + 54436876 ----------AGCAATAACCTCCAAGTCACATGAGACAAGGAT--GCATTCACATCCTGCAAGGGGTCTCCCTCCCAGTC a score=45246.0 s hg17.chr7_random 341096 280 + 778964 ACTCTCCTCCAAGGAGGAAAAGGCCAGGAGGTC---CTGTTA--GAGGATGCAC-------TCTGAGAG-------CCCGGGCTCCCTAAGGTAT----GAGAGTTCTAACCAGCAGGTGTAGACTTTTCAGGAGTGAGGAATGAGGCAGGCA-TTCCAAA--CCTGGAGCTTCATCACCTTTTGTTTCATCTC---AAGACAATTCTGAGGGGCTGTTTTGGAGCGTGTCTGGAAGGTGAACGTTGAAGAAGAGTGTGGGCTTTGATGTGACTCAGATGAGATCTTTCATGGGGAGGCAGGAATTCAA s panTro1.chrUn_random 63689037 280 + 240967748 ACTCTCCTCCAAGGAGGAAAAGGCCAGGAGGTC---CTGTTA--GAGGATGCAC-------TCTGAGAG-------CCCGGGCTCCCTAAGGTAT----GAGAGTTCTAAACAGCAGGTGTAGACTTTTCAGGAGTGAGGAATGAGGCAGGCA-TTCCAAA--CCTGGACCGTCATCACCTTTTGTTTCATCTC---AAGACAATTCTGAGGGGCTGTTTCGGAGCGTGTCTGGAAGGTGAATGTTGAAGAAGAGTGTGGGCTTTGATGTGACTCAGATGAGATCTTTCATGGGGAGGCAGCAATTCAA s mm5.chrX 85907458 289 + 160634946 ACTCTCCTCAAAGGAGGG-------AGGAGGTTGCAATGTTACTTACGAGGGAC-------CCAGGAAGACGGTCCCCCAGACCTCTTCAGGAAG---AGCGAAATCTTACCAGGAGTTATTTTCTTCTTAGAAATATAGTACGAGGAAGT---TTCCAAGATCTTGGAGCTCCAGCAGTCATTTTTCAGTCTAGTGAAGACCATTCGGAGGGGTTGCACTGGAACGTGGCTAGCCAGTGGATGATGGAACTCAGTGTAAGGCTGAGTGAAATTCAGGAGAGCTGTGTTGTGTGGAGGCTGCTGTTCAA s rn3.chr16 74704393 272 + 90224819 ACTGTCCTCTGAGGAGGAGGAGACCTGAAGGTC---CTCATA--GAGGACACTCAGTTTGACCTGGGATCCTGCTGCCTCCCCTTCCTCAGGGAAG--GAAGGGCTCTGGAAAGCAGGTGTTTGCTTCTC---AATGGGAAGTGGTGCGGGCACTGTCAGGAACCTGGAGCTCCAGAAATTATGGCTGTGTTTGGTAAAGATCATTCTGAGGGCTTGGCC---------------------------AGACTCAATACAGGGTCTGGTTGAGACCAGAGCAGCCCTGCCATGTAGCTGTTGTTGGTCAG s canFam1.chr25 40317975 258 + 54436876 ATTCTTCTCAGGGGGACA------CCAGAGGTC---TTCACA--GAGGACACTA-------AAGGGGACA------TAGGGACAGCATCTGGAAAAACTGAGGCGTCTGAAATTGAGGTGTATGCTTCTCAGGTGGATGGAATGAG--AGC---TGCTATGAATCTGGAGCTTCATCAATCGCCGTCTACTGTGCTGAAGACCATTCTGAAGGATTGGCCTAGAACATGGCTGGATGGTGAAGAATGAGGACCAGTGCAGGTGGAGACGGCATTCAGATGAAGTCTG---------------------- a score=38188.0 s hg17.chr7_random 341376 261 + 778964 TGCCCAGAATCTGGGCTGGTGTCTTTGAGGTCA-GTAGGTTGCCTCTTTGTATCCAAGTCCATTGTTACTAAATTGGAGGCTGGAGATTCTAAATGGCTTCCAGACCATCTCTC---TGATTCTCTTTGGGAGATTGGGTCTGAAAAAGACAATG--TCAGTATTTTTGGGAAATTCTAGAAAGTCTGCTTGGAAACCTGGGAAGACCTCTTGCCTAGTGCCTAAATATTCAATGTGCAGCTCTAGCCATGT------------AGATGCTTGGTAGGT s panTro1.chrUn_random 63689317 261 + 240967748 TGCCCAGAATCTGGGCTGGTGTCTTTGAGGTCA-GTAGGTTGCGTCTTTGTATCCAAGTCCGTTGTTACTAGGTTGGAGGCTGGAGATTCTAAATGGCTTCCAGACCGCCTCTC---TGATTCTCTTTGGGAGATGGGGTCTCAAAAAGACAATG--TCAGTATTTTGGGGAAATTCTAGAAAGTCTGCTTGGAAACCTGGGAAGACCTCTTGCCTAGTGCCTAAATGCTCAATGTGCAGCTCTAGCCACGT------------AGATGCTTGGTAGAT s rn3.chr16 74704665 272 + 90224819 TGCTGGGCACCTGGACTGTTATTTTCTTGCTCATTTCACCTGCATCTTTTAGTTCAAGTCTGTTGGCAATGGGAT-AAGACTGAATGTCCAGGGTGCTCTTGGAAGCAGTCCTTGCATGGCTCTCCTCTGGTGCATTGGT-----AGAGTCGATT-CTCTGTTTCTTCAGGGGATTCTGTCTAGGTTGTGTGGGGCACTGGGACATTTCCTCATCTGGGGCCCAGAAGCTGAGTTTTGGGTTCTGTCTATCCTGGTGGATGACAGGATGCTTGCTAGGT s canFam1.chr25 40318233 258 + 54436876 TGCTCAGAACCTCAGCTGCCATCTTCCTGGTCATGTGGGGTTTTCCTTTG-GTCCAAGTCCAGTTGTAATGGATA-GAAAGTGGAGAGTTTGAACAGTGTCCAAATCAGGTCTC---TGAGGCTCTCCTGG----GTGATCTAGAAGGGAAGGAGTCTCAGTTTATTTGGGGGCTTATGGGGAGTCCAGATGGACATCTGGTCAGATCTTTTGCCTGATACCTTGAGGCTGAGCTTAGAATCCTGGCCCAGT------------GTCCACGCAGCAGGC a score=23193.0 s hg17.chr7_random 341637 179 + 778964 -ATAGAGCTGGGTTTTCATTTATATCA----GCAAAACCTATGTCAGA--GTTGA-AGAAGTAGTCAAGACAAAGTGTCTTGGTCGCAGGCCGGGGAACATCTTAAAAGCAAACTTCTAGCCTGATGACTCT-----TGGCAATGAGTGTTGGGTCCTGGCTAAAGTGCCTTGAATGCAGCATGAGGCCAAT s panTro1.chrUn_random 63689578 180 + 240967748 -ATAGAGCTGGGTTTGCATTTATATCA----GCAAAACCTATGTCAGA--GTTGAGAGAAGTAGTCAAGACAAAGTGTCTGGGTTGCAGGCCGGGGAACATCTTAAAAGCAGACTTCTAGCCTGCTGACTCT-----TGGCAATGAGTGTTGGGTCCTGGCCAAAGTGCCTTGAAAGCAGCATGAGTCCAAT s canFam1.chr25 40318491 191 + 54436876 CATGAGTTCAGGTTTGAGTTTACATCATGACACTAGATTTGTGCCTGATGGATTA-GGACATGGCCCAGTCTACATGTTTTAGAGGCAGCCCAGGGAACATCATGGGAACAGACTTCAGGCCCGTTGTCTGCCAAAGTGATAATGAGGGCAGGGTCTGGGCCACAGTGCCTGGACAGTGTCATTGTGTCAGT a score=3253.0 s hg17.chr7_random 341816 36 + 778964 CCATGAATCCAACTTCCAATGGAGAAATGTTAATAT s panTro1.chrUn_random 63689758 36 + 240967748 CCATGAATCCAACTTCTAATGGAGAAATGTTAATAT a score=95000.0 s hg17.chr7_random 341852 679 + 778964 TTTTTCAGTTTGAATCAATCAGGGTGAAATTACCTTGCTATTGGTTTGCTTACTTTTTATTATTTCATATAAAATCTAAGACAAAATACATTAAATGCTTATTGA-TATATGTATTTATTCTT-CACCTGGCTCATAATATTTGCCTAATTTTAAACTTTCTTCTATTTTGTAGGTTTCAACTTATTTCA-TTGTA-AGA-TATTGTTAAATCTAATACGGGCATTGTCACTTTTACAAATAATTTTATTTTATTTCATGT-ATTTCCTATTCACTTTTTACATTTAAATTATGGACCATTTCATCATATAAAAAGCTCCATTTCTATTTTA-AAAATAA--GTCTTTGGGTTTT---TTTGTCTTGTAATTTCCATATTACATAGTAATGAGATAAACGTTAATGTTTTCAGGGtattttaaattttaaataattaCTCATTATATCCACGTGAAATTTGTTTTTACTGCATGTGTGAGTTGGAGAACCGTTTTC-----ACTTCTGACTCATCTTTACTGTGATCTCCTCAGAACTCATACCTCTTGTAGTTGGGAG---ATTGCAGTATATAATTCCAATAAATGGGGCAAATTCAATAATAACATAATACAAATGAGTTTGAAAGCAGGACATGTCTTCAAAGCATACACAACATGGGCCTATATATGTACAACAATAATAATTTATAAGTTAC-A s panTro1.chrUn_random 63689794 682 + 240967748 GTTTTCAGTTTGAATCAATCAGGGTGAAATTACCTTGCTATTGGTTTGGTTACTTTTTATTGTTTCATATAAAATCTATGACTAAATACATTAAATACTTATTGA-TATATGTATTTATTCTT-CATCTGGCTCATAACATTTGCCTAATTTTAAAATTTCTTCTATTTTGTAGGTTTCAACTTATTTTA-TTGTAGAGAGTATTGTTAAATCTAATACAGGCATTGTCACTTTTACaaataattttattttatttcatat-atttCCTATTCACTTTTTACATTTAAATTATAGACAATTTCATCATATAAAAAGCTCCATTTCTATTTTA-AAAATAA--GTCTTTGGGTTTT---TTGGTCTTGTAATTTCCATATTACATAGTAATGAGATAAACGTTAATGTTTTCAGTGtattttaaattttaaataattaCTCATTGTATCCACGTGAAATTTGTTTTTACTGCATGCATGAGTTGGAGAACCGTTTTC-----ACTTCTGACTCATCTTTACTGTGATCTCCTCAGAACTCATACCTCTTGTAGTTGGGAG---ATTGCAGTATATAATTCCAATAAATGGGGCAAATTCAATAATAACATAATACAAATGAGTTTGAAAGCAGGACATGTCTTCAAAGCATACACAACATGGGCCTACATATGTACAACAATAATAATTTATAAGTTACAA s canFam1.chr1 107039762 625 + 124897793 TTGTTCAGTTTGATGAACTCATGGTGAAGTCACCATG-----------------TTCAGTTATTTTATATAAAATCTGAGTCAAGATATATTG-----TTAATGACCATATGTATTTATTCCTACAGCTGGCTCATATTATATGCCTAATTTAAAATTTTCTTCTATTTTATAAATTTCAAGTTATCCTGCTTATG-AGA-GGATATTAAAACTAATGTAGATAC--TCATTTTT---TATAG----ATTTTATTTTACATGGTTTCCTATTTGTATTTTACACTGAGATCATGCAGTCTTTCATCaaataaatatatataattttatGTAAGAAAATAAACATTTTTGGGTATTATGTTTGGTTCATGATTTCCCTATTACA-AGTGATGAAATAAA----AATGCTTTTCATGTATTCTG--------------------TTTATCCAAATGGAGTTTG-TCTTATGGCAGGTGTGGGTTAGGAGGCTGCTTTCTTTTTACGTCTACTTTATTTCCACCTTGACTTTTCTCTGCCTCGTAGCTCTTATTATAGGAAGGGAATAGCAGTTAATCATCCCAATGAGTGGGGC-AATTCAATGATAGTATATTACAAATCAATTTGAACCCATGACATGGCTTCAAATTATATGAAACAAATGCCCACATATGTACAAAAATTACA--------------- a score=6487.0 s hg17.chr7_random 342531 88 + 778964 GTTTGGATGG-GAATTAAAAGTACAGAAAA-TTtgttaaaataaattaaaatggagatcacgtctcaataatctctgagcagacgaaatt s panTro1.chrUn_random 63690476 90 + 240967748 GTTTGGATGGAAAAGTAAAAGTACAGAAAATTTtgttaaaataaattaaaatggagatcacttatcaataatctctgagcagacaaaATT a score=3220.0 s hg17.chr7_random 342619 34 + 778964 agttaggtctcataagtgatctcaaccttgcttg s panTro1.chrUn_random 177597909 34 - 240967748 agttaggtctcataagtgatctcaaccttgcttg a score=59883.0 s hg17.chr7_random 342653 703 + 778964 atttgcaaatacaagcaaaacttaaa-tatttcttgtagctgcctatttaaaaaagagaaatgaagctcaaccaatcaggagtagccaacatccttatataaatagaaactgtccaacaagataaacagacgaacaaaaaacaat-aaaaaagttgtgctaccaccaatcaaatgatttttttgtttctacattttttcaataaatacttgcttcttactctgtcagagaagcactaaataacttttggtctgatattttataatttatcaattgctcttactcaaatagacacttggcaatttcattgtgtctcaaattactttttAGCAGaataaaataaactaggaataaacattacaaaaatgtgtacagaatatg---agaaaaacatagaaagtttatgaaatatatgaatgtagacataagcaaatagacaatttgtatca-tattcttaggcagcaaatctcaatattatc-aacatcaattgtccttaagtttatt-tataaattcaattttgttcctatacagataccattaaat----attggaagta--cacgttact------------------ataaaatattatatagatgaaaacacacataagaatagacaagaaaac--tctgaaaaaaaagcaaaaaacaag-------actggcaagctcTGTGAAAAATCTTGATTGATT-AAAAACTCATATGTCACTGAAACTAAAAATTCAGAAATAGAC s panTro1.chrUn_random 177597943 709 - 240967748 atttgcaaatacaaacaaaacttaaattatttcttgtagctgcatatttaaaaaagagaaatgaagctcaaccaatcagaagtagccaacaaccttatataaatagaaactgtccaacaaggtaaacagacaaacacaaaacaataaaaaaagttgtgctaccaccaatcaaatgatttctttgtttctacatttttcaaataaatacttgcttctcacactgtcaatgaagcactcaatatctttccatctgatattttataatttatcaattgctcttactcaaataaacactttgcaatttcattgtgtctcaaattactttttagcag-----aataaactaggaataaatattacaaaaatgtctacggaatatg---gaaaaaacatagaaagtttatgaaatatatgaatgtagacataagcaaatagacaatttgtatca-tattcttaggcagaaaaactcaatattatc-aacatcaattgtccttaaagttatt-tataaattcaattttgttcctatacaggtaacattaaat----attgcaagta--cacgttact------------------ataaaatattatatagatgaaaacgcaaacaagaatagacaagaaaac-ttctgaaaaaaaaaaaaaaaaaaaaaaaaaaCACTGGCAAGCCCTGTGTAAAATCTTGATTGATTAAAAAACTCATGGATCACTGAAACTAAAAATTCAGAAATAAAC s canFam1.chr1 107040387 467 + 124897793 ATTTGCAAGT-----------------TATATTTGGGGGTTG-------------GGG--------------------------------------ATATAGTTACAAAAGGATCAGaaaaataaa-------------------------------------------------attttattttatttatttttttttagaaaa-------------------------------------------------------ataa------aatt--------ttaaataattac---------------------------------aacaaaataaaat-atctgagaataaatccaataaaaatg--tatcaaatgtgtataagaaaccatgtaaaatttctgaaatatatgaaaatagacaaaaata-------aaatcacatcactgttcttgggtaggaaaattccatattatcaaacatcaa---tccctaagctaattatataaatttaatttggtcctgatacagataccaTCAGTTACTCATTGGAGCTAGGCATGTTATTGCaaaaaaaaaaaaaaaaaaaaaaaaTCTTACAGATGAAAATACAAATAAGGATAGGCAAAAAAAAAATCTGAAAAAAaatgagga-----------------------------taaagttttagttaggc-aaga-------------tgaa---taaaatccagagctatac a score=26568.0 s hg17.chr7_random 343356 305 + 778964 CAAAGTGCCTAAGAAAGtgtcatagtgcatccaggctgctataacaaaatacctcagactgggtaaaggataaacaacagaaatgtatttttcacagttatggagtctggaaagtgcaagatcaaggcagcagaaaatttagtatatgttgagagccctgttccccatagatggtaccatcttgcacacgggacaagggcattgccttcaacttcccttgaaagagcactgattccattcatgaagatgaagaactcttggcctcaccacttccccaaaggccacacgcctaaaattatccacat s panTro1.chrUn_random 177598652 305 - 240967748 CAAAGTGCCTAAGAAAGtgtcatagtgcatcttggctgttataacaaaataccttagactgggtaaaggataaataagagaaatgtatttttcacagttatggagtctggaaagtgcaagatcaaggcagcagcaaatttagtatatggtgagagccctattccccatagatggtaccatctcgcacacgggacaagggcattccctttaacttcctttgaaagagcactgattccattcatgaagatgaagaactcttggcttcaccactttcccaaaggccacacgcctaaaattatccacat a score=28673.0 s hg17.chr7_random 343661 197 + 778964 aggaatttgcaaagggacataaacattcaggccatcgcaACAAAAACTACATGGGGGATGGCATCATTAATACTTGAGGTGTAAAAATGTGATGTTCTTATCGCAAAGGAAATAAATGATTTATTCTTCATGGCATATAACAAAATAAAGGTCCAAAGAAAATATTTTTTATGAAGATAAATCTATATGGTAAAAAA s panTro1.chrUn_random 177598957 197 - 240967748 aggaatttgaaaggggacataaacattcaggccatagcaATAAAAAGTACATGGGTGATGGCATCATTTATACATGAGGTGTAAAAATGTGATGTTCTTATCACAAAGGAAATAAATGATTTATTCTTCATGGCATATATCAAAATAAAGGTCCAATGAAAATATTTTTTATAAAGATAAATCTATATGGCAAAAAA s canFam1.chr1 107041037 165 + 124897793 AAGTATTTGAGAAAGTTAATAA--------------GCAATAAA----ATATGGGGGATGACATTATTAATACTTAGGGTTTGGGAACTTGATATTACCATCACAAAGTAAGAAATTGATTTACTCTTCACATCCTATAACAAGGTAAAGATTCAATGAGAA--------------ATACAACCATATGGCAAAAAA a score=8695.0 s hg17.chr7_random 343858 113 + 778964 CTAAGTGT-TGATAAGGTTAACCCTACAGGTTGCATCAGGATTTTCAAGGTTTCTGGTGATGAGCAAGGCCCCAGAGTTTCCTCCTGTGACATTTACCTGGAAGTTGCTCATGC s panTro1.chrUn_random 177599154 114 - 240967748 TTAAGTGTCTGATAAGTTTAACCCTACAGGTTGCATCAGGATTTTCAAGGTTTCCAGGGATGAGCAAGGCCCTGGACTTTCCTCCTGTGACATTTTCCTGGAAATTGCTCATGC a score=95323.0 s hg17.chr7_random 343971 964 + 778964 TGTTATTCAATTTGAAAGTAGATAATATTGTTTGTTTCTGTTCCAATATTTACT-------AAATTCAAAATAATATAGGGCTCTTTATGCGTAATTGTCAAACAGTCATTCAGTCAATGGTCCTCTGCTGAGGAAGAGCACAGATACATCCAAACACATATGATG-----TTCCTCAAATAGAGGACTTCTCCCTGTG--CGGGAGTCACCTATGTTGCACTTGATCAGA-GGCTTTCCCAGGCGAGCATTTCTCTGCAGCCCTACCAC--------AGACTTAACCCTGGAAATCTGACTCAGAAGGTGATA-GATGAACACCCAACCTAGCATTCTAATCTAATGG----ATCCT-----CTCTTAATAATCCCTTCCAGGGA----------------TCTGGGAGCTTTCCTGGATTCGTCTGCCACACACAGCT-AGGCT-----AAAACATTTGGATAGAAGCTTTGATCCTCACTGGCCCTCCTGCCCTGTTCTACCAGCTTCTCTAGAAGTATGCTTCTCTAATTGATCCTGAGAGAC-CCATCTAAGGCTATCTCTCTGTGCCAATATAATTGATCTCATAAAGTGGGAAGAGAAAC-----AGGCAAGAGTCCAGCTATGCTAGAAGCTGTGTCTAGGGTTCC-TTATCTGCTTTATGTCTCTGATTTACCTAAATATTGACAAATACAGATTAATCTCTAGGTAGT-----AGAAAAACAGAAGGAGAAATCGCAGTTCACAGA-AGAAGAAGAAAATGCAATCAGTAATTCCTAGAGTCCCGCTTAAGCTCAGCCACAGGGTACTAAGTCTCTTCAGGAAAAAGCAATGGTTGTCCATCATCTG--------AAAAACTGTG-GCGTTGAACCATGGGCACCGAGAGTGCACACTGCCCACTAGAGTTCCATGCCTACATCACAGAGAGATAGAATAGTCTCAAAGGATTCTTAA----GAGTAACGTGGAGACCAAAAGGAGCTGAATCCACAGCCTCTGTCTTACCGTCT-GTT----CTAATAGTATTTCCAGA s panTro1.chrUn_random 177599268 974 - 240967748 TGTTATTCAATTTGAAAGTAGATAATATTGTTTGTTTCTCTTCCAATATTTACT-------AAATTCAAAATAATATAGGGCTCTTTACTCATAATTCTCAAACAATCATTCAGTCAGTGGGGCTCTGCTGAGGAAGAGCACAGACACATCCACACACGTATAATG-----TTCCTCAAATAGAGGACTTCTCCTTGTG--CTGGAGCCACCTATGTTGCACTCGATCAGAGGGCTTTCCCAGGATAGCATTTCTCTGCAGCCCTACCAC--------AGACTTAACCCTGAAAATCCCACTCAGAAGGCGACG-GATGTACACCCACCCTAGCATTCTAATCTAATGG----ATCCT-----CTCTTAACAATCCCTTCCAGGGA----------------TCTGGGATCTTTCCTGGATTCGTCGGCCACACACAGCTAAGGCTCA---AAAATTTTTGGACAGAAACTTTGATCCTCATTGGCCGTCCTGCCCTGTCCTACCAGCTTCTCTAGAAGTATGCTTCTCTAATTGCTCCTGAGAGACACTATCTAAGGGTATCAACCTGTGCCAATATAATTGATCTCATAAAGTGAGAAGGGAAAT-----AGGCAAGAGTCCAGCTAGCCTAGAAGCAGTGTCTAGGGTTCC-TTACCTGATTTATGTCTCTGATTTACCTAAATATTGACAAATACAGATTCACCTCTA---AGTCACGCAGAAAAACAGAAGGAGAAATCCCAGTTCATAGA-GGAAGAAGAAAATGCAATCAATGCTGTCTAGAGTCCTGCTTAAGCTCAGCCACAGGGTACTAAGTCTCTTCAGGAAAAAGCAATTGTTGTCCATCATCTG--------AAAAACTGTG-GCCTGGAACTATGGGCACCGAGAGTGCACACTGCCCACTAGAGTTCCATGCCTACATCACGGAGAGATAGAATAGTCTCAAGGGATTCTTAA----GAGTAATGTGGGGGCCAAAAGGAGATGAATCCACAGCCTCTGCCTTACCGTCT-GATCTAACTAATA-TATTTCCAGA s canFam1.chr7 33823337 970 - 83037113 TGTTATTT--TTTAAAAGAAGGTAAAAGAATT--------TTCTATCATGTATTTTAAAAAACACTCAAAAAGA---AGGGCTTCCTTTTTGTGATCTTCTAAATATTTCCCAGTCAATAGCCCTCTACTGAGGACAGGTACAAA-ATCTCTGACCTTAGATGATGTATGATTTATTAGATACGATTCTTCTCCTTGAGACCAGAGCTCAGCTTTA--GCATCTGATGAAA-GGCTTTCAGAGGTTCATACTCACTTTAAGAATCATTTCTAAGATGAAGAATGAGCCAGAGACATGAGGTATGGAAAGAGGAATGATGAACTGTTATGGTGTGACTCTGTTCCCCTAGACATATCCTACACCCTCTTAATAATCCATTCCAAGGACAGAGAATCATAATATTTTAGATTTTATCCTGGAGTTCTCTACCACCCCCAGAC-AGATGTATTTGTGAACTTTGGATAGAA----TAATCTTCCCTGATCACTCTGCTCT--------------TTTAAAAGGAAAATGTTCTCATGTTTCTTGAGAGAGGCCATCTCAGA-TATCTGCTTATGTAAACATAATTGATTTGGTAAAGTGGGAAGAGTAATAAGGAAAGCATGAGTCCCTCCACACTAAGCACTGAATTTAGGGTTCCTTTACTCTGTTTCTGCCTATTTTTTCCACAAAT------------GGATTCATCTGTAGGGAGT---ATAGAAAAATA-----AGGAATTTC--CTCATAGATACAAAAGGAATATATTAGTTAAGATGACTCAAG---AATTTGAGTT------TGGGGCACTGTGGCTGTTCAGGAGATAGAAATCTGTCTCCAACTTTTGCTCCCTCTAGCAGCAATGAACATTGAACTATGAACC-------TGTATGTTCCAACCTAGAGGTCCAGGCCTCTGTCACAGAGCCAAGGGATGATCACAAATGACTCTCAAACATGAAAGATGGGACAGGAAATAGAAAATGAACTTCTAACCCCT-CCTCACTGCCTAGAT----CCAATAGTACATCCTGA a score=56232.0 s hg17.chr7_random 344935 764 + 778964 CTCTTTTGTGGGCTGCACCAGGGGTTATTCAGAAAGAAAAAAAGTTGTTAATGTCCCACCATTCCCCGTAGCTTCCGAGGTCTAAGTTGTTCATttcccacgttccaggttgttgttctccctctatctccacagaatcagtgtgtctcattccgatatctataatctcacctttattctagtcgccctttacttttttctagacattttgtgtagtagagccaggtaaaacagatacaagaatatttacataaaacttaaccagaaCTAAGTTGGAGTCCCATAACTGCTGCTAGGCTGGGATGCAACTCAGAGG-ATACAAAAGCCA-GGCTGGTCTAGAATTGCAGGTATGGGAAAGAAAG---ACA-TTTCACCCAGGAATTATTAGCACGAAATT--CCAAATTTGTGAAATAGATTCCT-AGATCCCCCAAACATTTCATCCTTATCTTGGAGGCAATCTGGAAGAGATAATCCCCTTTCAGAGAAAAGCATACCTAATCAACGAATTATCTAACCAACATGTGTGGAAAAGGAGGGAACATCGTAGAGTTGGCCCATTTTAGT-CGATGTGGTGAAAAATGCCACGAAGTCAGAGCTCAATTG-GCCTCAAAAGCCTAAAAGGTGGCACAGATTAGCTTCAAGGGACACATGGTATGGCTGGAGTCAG-ATGACTGTTATGCTGAAGAAGTCAACAGTGGTTACTGATATCTCAAGAAGTGGGCTAAAAGTCCACTTCTGGTTACTCTGCTAGGTATGGTCTAGGAATT s panTro1.chrUn_random 177600242 758 - 240967748 CCTTTCTGTGGGCTGCACCAGGGGTTGTTCAGAAAGAAAAAAAGTTGTTAATGTCCCACCGTTTCCCGTAGCTTCCGAGGTCTGTGTTGTTCATAccccaggttccag---gttgttctcccactacttccacagaatcagtgtgtctcattccggtacctataatctcatctttattctagtcgccctctacttttttctagacactttatctactagagccaggtaaaatagagacaagaatatttacataaaaCTTAGCTGGAACTAAGTTGGAGTCCCATAACTGCTACTAGGCTGAGATGCAACTCAGAGGAATACAAAAGCCAGGGCTTGCCTAGAATTGCAGTTATGGGAAAGAAAAGTCACACTTCCACCCAGGAATTATTAGCACGAAATTTCCCAAGTTTGTGAAATAGATTCCTAAGATCCCCCAAACATTTCATCCTTATCTTGGAGGCAATCAGGAAGAGAAAAT-------------AAACCATACCTAATCAACAAATTATCTAACCAACATGTGTGGAAAAGGAGGGAACATCATAGAGTTGGCTTGTTTTAGTACG-TGTGGTGAAAAATGCCACGAAGTCAGAGCTCAGTTGAGTCTCAAAAGCCTAAAAGATGGCACAGATTAGCTTCAAGGGACACATGGTATGGATGGAGTCGGCAT-ACTGTTATGCTGAAGATGTCAAGAGTGGTGACTGATATCTCAAGAAGTGGGCCAAAAGTCCACTTCTGGTTATTCTGCTAGGTATGGTGTAGGAATT a score=126523.0 s hg17.chr7_random 395702 1405 + 778964 aaaaataaaaacaagaacatggaattgcctttaa-aatatatttacttatcccaacatataggggatgttctctttttcaacatgtaactcgtttttaaattattaaggagatgctttatttttttcataccaagtctttgaaaactggtctgtattttacagcgaaaggcacatctcaatttgaacactgaattttcaatggagatacctatcagtgtctagatttcataaaatgtacagttgaaaaagtagatttatatacccaagctgttctaaaaacacaaacatttttccaataaccgaatggagtaccaattt-------aaatttaaattcattaaaattttttaaaaattataaactcagttcttcagtcacactagccatatatgggaccagtggctaccatattggacaacccaggtCTGGGGGTCATGCTGTACCAGAACTAACGTGGGGTCAAAATTGTTGGGATAGGAAACAAACAAACACATTTCTAATGATGAAAGTCATTTTGACACCCCCccaccatgacttccacctcctagtgttcaggcctttgtgtaatcccctccccttgagtgtgggtgcgacctgtgacttgcttctaactaatataataaagcaaaggggatgaggatgtcactcctgtgattactacatatattaatctgttctcacactgctcataaagacatacatgaaactgagtaatttaataaaggaaagaagtttaattgactcacagttccacatggctggggaggcctcacaatcatggcagaagacaaaggaggagcaaaggcacatcttacatggcagcaggcaagagagcctgtgcaggggaacttccctttataaaaccatcagatctcatgggtcatattcactaccacgagaacagcacgggaaagacccaccctcatgattcaattacctcccactgggtccctcccatgacatgtgggaattatgggagctacaattcaagatttgggtgggcacacagccaaaacatgtcactgtgtatataacattttttagcaagttaaagactctcctgtggcttgatgaagtggacgtgctggagaagctcacagaacaaagaactgcagtggcctctaggaaaagcctccagccaacagccagcaaaaatctggaaccctcagtcccaaaaccacaaggaaatgaactctgcccacaacctgaatgagcttggaagcagattcttccccatttgagcctccagatgaaaacacagccttacacattgattgcagtcttgtgagattataacagaggacccagcttaattgtgcttggattcccgatccatggaaaatgtgagataataaatgtgtattgttttaagtga--aggacatttgtggtaatctgttacATGGTGTAAGAT s panTro1.chr12 113361390 1410 + 117159028 aaaaataaaaacaaaaacatggaattgtttttaataatacatttacttatcccaacatataggggatgttatcattt-caacatgtaactcgtttttaaattattaaggagctgctttatttttttcataccaagtctttgaaaactggtctgtattttacagcgaaaggcacatctcaatttgaacactgaattttcaatggagatacctatcagtgtctagatttcataaaatgtacagttgaaaaagtagattcatatacccaagctgttctaaaaacacaaacatttttccaataaccgaatggagtaccaaTTTTTAGAttaaatttaaattcattaaaatttttaaaaaattataaactcagttcttcagtcacactagccatatatgggaccagtggctaccacattggacaacccaggtCTGGGGGCCATGCTGTACCAGAACTAACGTAGGGTCAAAATTGTTGGGATAGGAAACAAACAAACACATTTCTAATGATGAAAGTCATTTTGACACCCCCccaccatgacttccacctcctagtgttcaggcctttgtgtaatcccctccccttgagtgtgggtgtgacctgtgacttgcttctaactaatataataaagtaaaggggatgaggatgtcactcctgtgattactacgtatattaatctgttctcacactgctcataaagacatacatgagactgagtaattt-ataaaggaaagaagtttaattgactcacagttccacatggctggggaggcctcacgatcatggcagaaggcaaaggaggggcaaaggcacatcttacatggcagcaggcaagagagcctgtgcaggggaacttccctttataaaaccatcagatctcatgggacatattcactaccacgagaacagcacgggaaagacccaccctcatgattcaattacctcccactgggtccctcccatgacatgtgggaattatgggagctacaattcaagatttgggtgggcacacagccaaaacatgtcactgtgtatataacattttttagcaagttaaagactctcctgtggcttgatgaagcggacgtgctggagaagctcacagaacaaagaactgcagtggcctctaggaaaagcctccagccaacagccagcaaaaatctggaaccctcagtcccaaaaccacaaggaaatgaactctgcccacaacctgaatgagcttggaagcagattcttccccatttgagcctccagatgaaaacacagccttacacattgattgcagtcttgtgagattataacagaggacccagcttaattgtgcttggattcccgatccatggaaaatgtgagataataaatgtgtattgttttaagtgacta---catttgtggtaatctgttacATGGTGTAAGAT a score=75854.0 s hg17.chr7_random 397957 829 + 778964 GCATGCGCAGAATATTCCGGCTCGGGACGGCGTGTGCGGCCACCATGTGGGTGCCCTCCTCTCCCCCTTTCGTGGTCACTTCGGTGCCTGTGGGCTGAATCATATGTGGCAGTTGGAAGTGCTCCACTAGGATGGAAGCTATACTCactcattcattcaacaggtgtttagtgagcatctccttcaggccagaccccgcccgaggggttgaagatactgcatgcgcaacacagaccaccccctaccgtacctggctttactgagcttttttctaatggaagagactataagtaaatgaaataaattgttagaatataggatgaggcagtgagacgtgctgaaaagaaacacaaggtggtgcagggggtggggatgCAGTTTTGGTAGAGACCAGCGTCTTAGGATTGTGTCATCCTCATGGTTTGTGAGCCGTCCTGCACATCTCCGCAGAGTGTCTGTGCTGTGTGTGTGAGGTTTTTATTTGCCTGGTGTCATGAGACCCATGTTGGTGACTCTTTCTTAGCTTACAAATGACTGCGAGATAATATTTTTTTAAAAACATTAggccaggcacggtggctcatgtctataaccccagcattttgggaggctgaggtgggtggatcacttgaggccaggagtttgagaccagcctgtccaacatgacaaaaccctgtctctactaaaaatacaaaaattagcctggcatgatggtgggtgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaaccagggaggtggaggttgcagtgagctgaaaatgcaccactgcactccagcctgggcaaca s panTro1.chr6 161112265 828 - 161576975 GCATGCGCAGAATGTTCCGGCTCGGGACGGCGTGTGCGGCCACCATGTGGGTGCCCTCCTCTCCCCCTTTCATCGTCACTTCGGTGCCTGTGGGCTGAATCATACGTGGCAGTTGGAGGTGCTCCACTAGGATGGAAGCTACACTCactcattcattcaacaggtgtttagtgagcatctccttcaggccagaccctgcccgaggggttgaagatactgcatgcgcaacacagaccaccccctaccgtacctggctttactgagcttttttctaatggaagagactatgagtaaatgaaataaattgttagaatataggatgaggcagtgagaggtgccaaaaagaaacacaaggtggtgcagggggtggggatgCAGTTTTGGTAGAGACCAGCCTCTTAGGATTGTGTC-TCCTCATGGTTTGTGAGCCGTCCTGCACATCTCCGCAGAGTGTCTGTGCTGTGTGTGTGAGGTTTTTATTTGCCTGGTGTCATGAGACCCATGTTGGTGACTCTTTCTTAGCTTACAAATGACTGCGAGATAATATTTTTTTATAAACATTAggccaggcacggtggctcacgtctataaccccagcattttgggaggctgaggtgggtggatcacttgaggccaggagtttgagaccagcctgtccaacatgacaaaaccctgtctttactaaaaatacaaaaattagccttgcatgatggtgggtgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaaccagggaggtggaggttgcagtgagctgagattgcaccactgcactccagcctgggcaaca a score=2298.0 s hg17.chr7_random 398971 508 + 778964 GCTTCCCTTGTTTACCTGCGTTTCTGTCTTTTCCTGTGCAG-AGGCCGCCCCAGCCCATCCACAGTCTCACCCTCATCTCCCCCTCCCCTGAGGCCGCGCGCAGGGGCCCCCAGCATTCACATTTCACATAAGTGCCCCCAAAAAGGG----GGGATGGAGGAGGACGAGGCCCTGGAACCCCCCGGCTGGACCCTCAGG-------------------GCGCCGGGCCCCCCCACTCTTCCCACCCGGAATCCTCAGAACTGCAGAAGGGGCTTCTCAGCCGCGTGCACCCCTGTCTGCCTGAGCCCCCTCCCCCCCTGCCTGAGCCCCCTCCACCCCTGCCGGGGGTCTGTGGGGAGGGAAGGCTCTGGGGGCCGTCACGTTTAACACCTCACCTGGCCCCACAGAATGAAAGATCTTTGACAA-ATGCAGAATCA----GTGACTTTCTTC-------------------CACGCTCCTGGGAGAAGCCTGGTTCACGCCGCCTGCGTTTATCCGGCGC------------GCAGCCCCGGGCAGCTCTCAGGCCTGGGGATC------TG s canFam1.chrUn 89167931 485 - 91062872 GCTGCAACTGTTTTTTTGGTTTTCTTTCTGTTCCTGCAAAGCAGGCTACCTCTACTCTGTGAAAG---------CACCTCTCCATCTCCCTGG------------------------------TTCACACAATTGTCCCTGAAAAGGGAGGAGGGATGGTGGCAAGTGAGACCACATAAGTGGTGGGCTGGCCACTCgggagagggggcgggggagggggggcaggggggggaCACTCTCCACCTTCAGATCTCTCAGA---GAGGAGGGCTGTGCTCAGCAGTGCACAGATCTGTCTA-------------------------ATCCTCCTCCATGCCCAC-AAAGATCTGTG---AGGTAAGGCTCTGTGG-CTGTTAGGTTCC-CAGCTCATCCAGCCCCTCTGAACGAGAGGTTTGTGGCCATAGACCATGTCACCAGGTCACATCTGTCATGGACGTGACAACAACAACACACCCC----AGGAGCCTG-------TGGGATGCATTTGTGTGACGCAGGCACGGGGGTGCCACCTCAGGCTTCCCTCTTGTCT-----TCCCCTTATT a score=86.0 s hg17.chr7_random 399479 38 + 778964 TGTGTTTTCTG-GACAGGAAGGAAGCAGCCAC--CCTCGCC s mm5.chr5 12685854 39 - 149219885 TGTGTCATCTGTAACAGGAGCATAGAAGACAT--TCTGACC s canFam1.chrUn 89168416 34 - 91062872 TGCATTTTCCCTTCCAG-------GCAGCCGCGGGGTCACC a score=98329.0 s hg17.chr7_random 399517 184 + 778964 ATGGCCTCCCCGCCCGCCTGCCCCTCGGAGGAGGACGAGAGCCTGAAGGGCTGTGAGCTGTACGTGCAGCTGCACGGGATCCAGCAGGTCCTCAAAGACTGTATCGTCCACCTCTGCATCTCCAAGCCCGAACGCCCCATGAAGTTCCTCCGGGAGCACTTCGAGAAGCTGGAGAAGGTGAGTG s mm5.chr5 12685893 184 - 149219885 ATGGCCTCCCCATCATGCTTCCACTCGGAGGATGAGGACTCTCTGAAAGGATGCGAGATGTACGTGCAGAAACATGGCATCCAGCAGGTGCTCAAAGAATGCATTGTGCACCTCTGTGTCGCCAAGCCGGACCGGCCACTGCGATTCCTCCGGGAGCACTTTGAGAAGTTGGAGAAGGTCAGTG s canFam1.chrUn 89168450 184 - 91062872 ATGGCGTCCCAGTCCTCTTACCAGGTAGAGGAGGATGAGAGTCTGAAGGAGTGTGAGCTCTATGTTCAGAAGCATGGCGTCCAGCAGGTCCTCAAAGACTGCATCGTGCACCTGTGCATCTCCAAGCCCGACAGGCCCATGACATTCCTGCGGGAGCATTTCGAAAAGCTAGAAAAGGTCAGTG s fr1.chrUn 293217259 181 - 349519338 ATGGCCACC---TCCTCCTCCACAATAGATGAAGATGACAGTTTGAAGGGCTGTGAGATATTTGTGCGAAAGCACAACATCCAGCAGATCCTGAAAGAGTGCATTGTCAACCTCTGTATTACTAAGCCTGAGCGTCCTATGAAATTCCTGCGGGAACATTTTGAAAAGCTGGAAAAGGTCAGTG s danRer1.chr3 1590851 181 + 31142523 ATGGCCACC---TCCTCCTCCAATCTGGAAGAAGATGAAAGTCTGAAAGGCTGTGAGGTTTTTGTGCAGAAACACAACATACAGCAGATCCTCAAAGAGTGCATCGTCAACCTGTGCATCGCCAAGCCCGAGCGGCCTATGAAGTTCCTGCGGGAACACTTCGAGAAGCTGGAGAAGGTGCGTA a score=-675.0 s hg17.chr7_random 399701 33 + 778964 GCCCCCGCCGCCCGCTGCTTCCCTTCGCACGTG s mm5.chr5 12686077 22 - 149219885 CCCCTAG-----------TATCCTTTGTAGGTG s canFam1.chrUn 89168634 32 - 91062872 ATGACTGCCACCTGCTT-TCCCTTTGGCAGGTG s danRer1.chr3 1591032 33 + 31142523 GCTCTTACTGTGCTTTGCTGTGCTGGGGATGTG a score=593.0 s hg17.chr7_random 399734 10 + 778964 TCCTGGGGCA s mm5.chr5 12686099 9 - 149219885 GCCT-GGGCA s canFam1.chrUn 89168666 10 - 91062872 TACTGGTGCA a score=-44.0 s hg17.chr7_random 399744 107 + 778964 GAGGCGGCAGCCGGGGAAGCCTTCCCTCTGTCCCGTGGTCCTCGAAGGCTGGGTGCCCCAGAGACTGTCTGCCGTCCTGCAGGTCCTTCCAGAAGCGCGGGGAGAGA s canFam1.chrUn 89168676 75 - 91062872 -----GGCAGCCGCTCATACCCATTCACCG---CGTGGC--------ACTGGCTGTCCCAGGGAGTGTGGGGGG---AGCAG--CCCTCCA-----------AGGGG a score=160.0 s hg17.chr7_random 399744 3 + 778964 GAG s mm5.chr5 12686108 3 - 149219885 AAG a score=1918.0 s hg17.chr7_random 399851 189 + 778964 GGCCGACCTGGGGCCCACCGTCCCTTGTTTGGTCTCCCGAGATTCATGCCTCTAGGTGGGGTCCTCTGAG-CCACAGAATTCCCCCTTCGGCTTCCAGGGGGTTCCAGGTCTTCAGAGCTCTCCTGGAAGGAGGTTCAGGG------TTTTAGGTCCAGGTGTTTCGCTA--GCTTGTGGGGCTCACCGACAGTTTTC s mm5.chr5 12686622 169 - 149219885 GATTGACTTGACACTGACTTTTCTTTATTTGGCCTT---GGCTTCAT----------------CTCTGGG-TCCCACACTCTCGCTTTCTATTTCTTTGAGGTTTACAGTCTTCAGAACTCTCACAGACT--GGTTCAGGGATTATTTATCTGAACCTGGTTAGTGGCCA-------CAGGACTCGCTGGCAGTTTTC s canFam1.chrUn 89168751 143 - 91062872 GGCTGACCT-----------TGCCTGACCCGTTCTA--GGGCTCCAT-------------------TGTGCCCCCACAGACCCCTCTT----TCCTCTGCAGT-----GCTTTAGGATCTCCCA--------GGTGCAGAG------CCTTGGGAAGAGCTGACTGAAGAGAGCTTATGGGGCCCACTGACTGTTTTC a score=314.0 s hg17.chr7_random 400040 41 + 778964 -AGCCTAGTTACAGA-------------TGCTGTCACCA---CTTGGGATAAAATAGC s canFam1.chrUn 89168894 58 - 91062872 AAGTCTGGGGACAGAGATGGGGACTGGTTGCAGTTATAGAGCTTGGGGATGAAAGAAC a score=34.0 s hg17.chr7_random 400390 18 + 778964 ATAGCTCCCATGGCTAAG s canFam1.chrUn 89168952 18 - 91062872 ATGGCTGCGATAGGGCGC a score=1719.0 s hg17.chr7_random 400408 6 + 778964 GTGATG s mm5.chr5 12687262 6 - 149219885 GTGATG s canFam1.chrUn 89168970 6 - 91062872 GTGATG a score=14956.0 s hg17.chr7_random 400414 138 + 778964 --TGGGGTTTGAGGTCGAATTCCACGTTGAT------------CTTGCAGCAGTGGG-------AGAGGAAAGTACCCTTCGG-CACGTGTGGTC---GGGGAGAAGC----TCAGGCCTGCTCACGGTC---------------TTCTCTCCGGGAATG--ATGCCTCTCACCCC--------------CTTCCTGG s panTro1.chr6 161059122 138 - 161576975 --TGGGGTTTGAGGTCGAATTCCACGTTGAT------------CTTGCAGCAGTGGG-------AGAGGAAAGTACCCTTCGG-CACGTGTGGTC---GGGGAGAAGC----TCAGGCCTGCTCACGGTC---------------TTCTCTCCGGGAATG--ATGCCTCTCACCCC--------------CTTCCTGG s mm5.chr5 12687269 183 - 149219885 --AGGTGTGTGTAGTCCAGGTCCATGTTGATCTGCATGCTGGACTTGCAGT-GTGGA-------TGGAGGAATTTGCCCCAGA-CATATTTGAT----GGGAAGAAGCACTTTCACATGTGCTCTCTCTCTCTCACACCCTCTCTTTCTTTGTGGTACTGTCATGCTACGCAACTCAGGCTCCCCTCAAACTTACAAT s canFam1.chrUn 89168976 149 - 91062872 TGGGGCATTTGAGGCCAGACTACATGGTTATCTGCATCT----CTGGGAGGAGCAGGCACAGACAGAGGAGATTACCCCTTGGATTCGTGCAGTCTTTTGAGGGGACC-------------CCCCCACTC---------------ATTCCTCCATGAATA--ATGCCCCTCACCC---------------CTTCCTGG a score=0.0 s hg17.chr7_random 400552 20 + 778964 CCTCCTGCATCTGGGCTCTT a score=3836.0 s hg17.chr7_random 400552 18 + 778964 CCTCCTGCATCTGGGCTC s panTro1.chr6 161059260 18 - 161576975 CCTCCTGCATCTGGGCTC s mm5.chr5 12687452 18 - 149219885 CCTTCTGCATCAGCGTTC a score=182.0 s hg17.chr7_random 400570 2 + 778964 TT s panTro1.chr6 161059278 2 - 161576975 TT a score=2489.0 s hg17.chr7_random 400572 33 + 778964 TTCGTAGACGTGCGTGCCTGGGAAGTGGAGGCC- s panTro1.chr6 161059280 33 - 161576975 TTCGTAGACGTGCGTGGCTGGGAAGTGGAGGCC- s canFam1.chrUn 89169125 23 - 91062872 TTCATAGGT-----------GGGAGGACAGGCTC a score=33761.0 s hg17.chr7_random 400605 303 + 778964 ---GGGACAGGAGCCCCTG-----------------TGACACCTCCTGCTGTGTCCCCTCCCCCTCGCCGTGGGCTCCTCCTGTCCTTGTTCTGGGC-CCCACCCCAGGCTGTC----TGCGTATCAC---CTAATGTTTCTCCTCTTGGTCC---------TTTTATCACAACT------------------TAACTATCTCCTGTGCCCATC----TCTC--------CTGGGGACCAAATGGGAACTTGGGAAGCCCAGTTCAGGCTAAGATCTGCCTTTGAGTGCCTGTGAGCCACCAGGTCCCCATCCGGCGGTGTTTATGCTTTCGACAGGGGCCTCCTGTGATCACATAGTCCTAACCCAAAG s panTro1.chr6 161059313 303 - 161576975 ---GGGACAGGAGCCCCTG-----------------TGACACCTCCTGCTGCGTCCCCTCCCCCTCGCCGTGGGCTCCTCCTGTCCTTGTTCTGGGC-CCCACCCCAGGCTGTC----TGCGTATCAC---CTAATGTTTCTCCTCTTGGTCC---------TTTTATCACAGCT------------------TAACTATCTCCTGTGCCCATC----TCTC--------CTGGGGACCAAATGGGAACTTGGGAAGCCCAGTTCAGGCTAAGATCTGCCTTTGAGTGCCTGTGAGCCACCAGGTCCCCATCCGGCGGTGTTTATGCTTTCGACAGGGGCCTCCTGTGATCACATAGTCCTAACCCAAAG s mm5.chr5 12687527 327 - 149219885 ---GACACAGGTGCCCCTGACTGGCTCCTCGGTGAATGACGTCGCTCACAGT-TCCCCAGCCCCTCTCC-TGGGCTCCTCCTCTGCTTGGGATGGGT----------GGCTAGCAGGATTCCTATCAAGAGCACATGGCTTCCTCCTAGGTACCAGCTTCATCCTTACCATAGGTCCCCACCCAGAGTATTGCTGAGTGTCACCTGAGGTCATT----CCCTTGTCCCAGTTGGAGACCAGATG-------GGGAGTCTCA--TCAGGCTGTGACTTGCCTTTGAGCATTTGTGAACCATCTG----CTGCTAGGCACTTTTCATG---------GTGGCCTCCTGTAAT--CATAGCTCCAACTCAAAG s canFam1.chrUn 89169148 222 - 91062872 AGAGTGGGAGGGGTCCCTT-----------------------------------------------GTGGTGGGTTCCGCCCTCCCTCCCTCTGGCTCCCCACCCTGAACACTC----TGTGGACAGT---------------------ACAC---------CTTGCTCACAACT-------------------------CCACTGTTCCCATCCTGGCCTC--------GTGGGGGTGAA----------TGGTACCCCAG-TCAGGCTCAGATC------TGAGTTCCTCTGAG--------------TCCAGCAGT-TTCACG--TTTGACAGGGGCCTGCTGTGGACACATAGTTCCAACCTGGAG a score=8091.0 s hg17.chr7_random 400908 60 + 778964 GAGTGAATATAACTCTTCCCTTGGAAGCAGTCCATGCAAAAACATTTTAAAGTAATGCAT s panTro1.chr6 161059616 60 - 161576975 GAGTGAATATAACTCTTCTCTTGGAAGCAGTCCATGCAAAAACATTTTAAAGTAATGCAT s canFam1.chrUn 89169370 53 - 91062872 GGATGAAT----TTCTTTCTTTTAAAACATCCCATT---AAACATTTTTACAGTATGCAT a score=8644.0 s hg17.chr7_random 400968 40 + 778964 ATGCCTATTAAGGGAAATTTGAAAAGTTCGGAAGTGGAAA s panTro1.chr6 161059676 40 - 161576975 ATGCCTATTAAGGGAAATTTGAAAAGTTCGGAAGTGGAAA s canFam1.chrUn 89169921 40 - 91062872 ATGCCTTTTAAAGAAAGTTTGGAAAGTTCATAAATAGAAA a score=173144.0 s hg17.chr7_random 401008 1945 + 778964 GAAGAGATAAAAACGCTCTGTAGTCCTCTCCACCGAATTCCCCCTCAAATGTTTTTATAAAAACGTAGTTGTAggccagatacggtggcttatacctgtaatcccagcatttggaaggtcgaggtgggaagatcacttgaggtcaggaattcgaccttgtctctcaaaaacatttaaaaagtttgctgggtgtggtggcacctgcttgtggtcccagctacccaggggctgaggtgggaggatcacttgagcccaggagtttgaggctgtggtgaaccatgatcacaccactgcactccagcctgggcaacagagcgaaaccctgtctcagaaaTACATACACACggctgggtgcagtggctcacgcctgtaatcccagcactttgggaggctgaggtgggcagatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccgcgtctctactaaaaatacaaaaaattagccgggcgaggtggcaggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgtacctgggaggtggagcttgcagtgagccaggatggcgccactgcactctagcctgggcgacagcgagactccgtctcaaaaaaaaaaaaaaaaaaagaaatacatacacacacacatgcatacacacatgcatacacacacatacatacatgcatacgtggatACATACGTACATAAGTCTTAGTTGCAGTCACGTTATAGATGCAATTCGTATTTTGTAtttttcattttttatatattctttaaagacctctctttaagtgactgcataatgttatactaaggtttttcaacctttcctccgtgagtgaatggacaattgagttgtttcctttttttttttttttttttttttttttagtattaaatattGGGGCTGGTgggtgcggtggctcacacctgtaatcccagcaatttaggaggccgaggcaggtggatcatgaggtcaggagtttgagaccaccttgaccaacacagtgaaaccccgtctctactaaaaatacaaaaattagccgggtgtggtggcacgcacctgtaatcccagctactcaggaggctgaggcaggagaattggcttgaacccgggaggtggaggttgcagtgagcaaagatgcgtcactgcactctggcctgggcgacagagggagactccgtctcagaaaaaaaaaaaaaaaaaaTTGGggccgggcacagtgactcatgcctgtaatcccagcactttgggaggcccaggagggtggatcgcttgcacacaggagttggagaccagcctggccaacgtggtgaaaccccatctctactaaaaatacaaaaattaactgggcgtggtggcatgtgcctgtaatcccaactacttgggaggctgaggcgggagaattgtttgaaccagggaggcggaggttgcagtgagctgattgcaacactgccctccagtctgggcaacagagcgagagtctgtctcaaaaataaataaaTTTTTTAAAaaagtatatgggaggatgtgtgtaggttacatgcaaatatgacaccattttatatcagggacttcagcatccatgggttctggttatccttagagattctagaaccatctcccatggataccaggggatgactgtaccacacaccgggcatcttaaacagaaatgtctcctcccacagttctggaggctgaaagtctgagatcaaggtgtattgggatggctccttctgggtctgtgtgggagaaGGAGATCTTAGGTGGTCCaggctggaagtccgagatcgaggtgtattgggatggctccttctgggtccgtgtgggagaaggttctatgtctcccccggctctgggtggttctggcgattttgggtggtccGggctggaagtccgagattgaggtgtattgggatggctaa s panTro1.chr6 161059716 1904 - 161576975 GAAGAGATAAAAACGCTCTGTAGTCCTCTCCACCGAATTCCCCCTCAAATGTTTTTATAAAAACGTAGTTGTAggccagatacggtggcttatacctgtaatcccagcatttggaaggtcgaggtgggaagatcacttgaggtcaggaattcgaccttgtctctcaaaaacatttaaaaagtttgctgggtgtggtggcacctgcttgtggtcccagctacccagaggctgaggtgggaggatcacttgagcccaggagtttgaggctgtggtgaaccatgatcacaccactgcactccagcctgggcaacagagcgaaaccctgtctcagaaatacatacacacggctgggtgcagtggctcacgcctgtaatcccagcactttgggaggctgaggtgggcagatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccgcgtctctactaaaaatacaaaaaattagccgggcgaggtggcaggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgtacctgggaggtggagcttgcagtgagccaggatggcgccactgcactctagcctgggcgacagcgagactccgtctc----aaaaaaaaaaaaaaagaaatacatacac------------acacacatgcatacacacacatacatacatgcatacgtggatacatacgtacataAGTCTTAGTTGCAGTTACGTTATAGATGCAATTCGTATTTTGTATTTTTCATTTTTTATATATTCTTTAAAGACCTCTCTTTAAGTGACTGCATAATGTTATACTAAGGTTTTTC-ACCTTTCTGCCGTGAGTGAATGGACAATTGAGTTGtttcc-------ttttttttttttttttttttAGTATTAAATATTGGGGCTGGTgggtgcggtggctcacacctgtaatcccagcaatttaggaggccgaggcaggtggatcatgaggtcaggagtttgagaccagcttgaccaacacagtgaaaccccatctctactaaaaatacaaaagttagcc-ggtgtggtggcaagcacctgtaatcccagctactcaggaggctgaggcaggagaattggcttgaacccgggaggtggaggttgcagtgagccaagatgcgtcactgcactctggcctgggcgacagagggagactccgtctcag---aaaaaaaaaaaaaaaTTGGggccgggcacggtgactcacgcctgtaatcccagcactttgggaggcccaggagggtggatcgcttgcacacaggagttggagaccagcctggccaacgtggtgaaaccccatctctactaaaaatacaaaaattaactgggcgtggtggcgtgtgtctgtaatcccagctacttgggaggctgaggcgggagaattgtttgatccagggaggcggaggttgcagtgagatgattgcaacactgccctccagtctgggcaacacagcgagagtctgtctcaaaaataaataaaTTTTTAAAAaaagtatatgggaggatgtgtgtaggttacatgcaaatacgacaccattttatatcagggagttcagcatccatgggttgtggttatcctgagagattctagaaccatctcccatggataccaggggatgattgtaccacacaccgggcattttaaacagaaatgtctcctcccacagttctggaggctgaaagtctgagatcaaggtgtattgggatggctccttctgggtctgtgtgggagaaGGAGAT-------------ggctggaagtccgagatcgaggtgtattgggatggctccttctgggtccatgtgggagaaggttctatgtctccccaggctctgggtggttctggcgattttgggtggtccGggctggaagtccgagattgaggtgtattgggatggctaa a score=4727.0 s hg17.chr7_random 402953 61 + 778964 ttctgggtccgtgtgggataaggttctgtgtctcccctggctctgggtggtgctggtgatc s panTro1.chr6 161061508 61 - 161576975 ttctgggtccatgtgggagaaggttctatgtctccccaggctctgggtggttctggcgatt a score=25171.0 s hg17.chr7_random 403068 265 + 778964 ttctgggtccgtgtgggagaaggttctgtgtctcccccggctccaggtggtgctggtgatcatcttgggtggtccaggctggaagtctgagaccaaggtgtggtgggatggctccttctgggtccatgtgggagaaggttctgtgtctcccccagctccgggtggtgctggcgattgtgggtggtccaggctggtagacgcatcgcgggtcctgccttcatcttcacatggtgttctgccccctgacagtgtctgtgtccagatt s panTro1.chr6 161061620 265 - 161576975 ttctgggtccgtgtgggagaaggttctgtgtctcccccggctccgggtggtgctggtgatcatcttgggtggtccaggctggaagtctgagaccaaggtgtggtgggatggctccttctgggtccatgtgggagaaggttctgtgtctcccccagctccgggtggtgctggcgatcatgggtggtccaggctggtagacgcatcgcgggtcctgccttcatcttcacatggtgttctgccccctgacagtgtctgtgtccagatt a score=115201.0 s hg17.chr7_random 403333 962 + 778964 tccccttctcatagggacactagtcatcctggaccaaggccaccccaatgacctcttgtaacttcctcacctccgtcaagaccctgcctccaagtaaggtcaacttctgaggttctgaggttctgaggttctgaggttaggactccagaatgtctatttctggggacacgattcaCGGATCCCAGCGGCCTTCTTGGGCGTGGGCAGGGCAATTTTTCTCAGGCCTTCCTCCAACAGCAAGCCTTtgctgagtgaaaatagcaggttgcaagacaggatctatggtacaattccatttttgtcgaaagggttgccgacaataatgtgttatatgcaaagaaaaaaatctgaggggcgtccgccaaaatgttgaaaagagtggcgtctcagggcacgattgcaggtgatttttgtttgttttctGCAGTAGCTGATAGGGACAGGCATTGGGGAGCTTTAGTG-AAGTCTTTGAAGTTGCATGCGTG-TTCTACATGTGGGTGCGTTTAACTGGGAAGAATTCCTCTTAGCTTGCGATGGATTCTCAAATGGAGCTGAGATCCCCA-AATATAAACCAGCTAACAGGGCCCTAAAATTCCATGGA-GTCTCATTTCCTGCTGCGTGTTCTGGACCAGTGAGGTGCTGTGGAATGTTTACA--ATAGAACCGGGAAG----TGTGCCTCTGGGTAG--------------------------GGCG---GCAGCCCTGGTGGAGAGGGTGAGGTCTGGG-----------CCACCC----CCTCGAGGCCAGCCAGGGCTGAGTGGAGGGCAGAAGCCCCTGATGGAGGATTTTTCTTCACTTGTATCCCAAGCAGGGTGCATGTTTGTGAGGCTTTCATAAAGCACCTGGGATAAAACACAGGCCAGCAGGGATGGCCCAGCTCTTGGAGT-------GCCGTCCGGGCTGGGCCTCTGGTGCTCTGGCCTTCGTGAGTGAGTTC---------------------------TTCTGTGGTGGAGACTTAAGCAGATAAAATATTCCTTAT s panTro1.chr6 161061885 962 - 161576975 tccccttctcatagggacactagtcatcctggaccaaggccaccccaatgacctcttgtaacttcctcacctccgtcaagaccctgcctccaagtaaggtcaacttctgaggttctgaggttctgaggttctgaggttaggactccagaatgtctatttctggggacacgattcaCGGATCCCAGCGGCCTTCTTGGGCGTGGGCAGGGCAATTTTTCTCAGGCCTTCCTCCAACAGCAAGCCTTtgctgagtgaaaatagcaggttgcaagacaggatctatggtacaattccatttttgtcgaaagggttgccgacaataatgtgttatatgcaaagaaaaaaatctgaggggcgtccgccaaaatgttgaaaagagtggcgtctcagggcacgattgcaggtgatttttgtttgttttctGCAGTAGCTGATAGGGACAGGCATTGGGGAGCTTTAGTG-AAGTCTTTGAAGTTGCATGCGTG-TTCTACATGTGGGTGCGTTTAACTGGGAAGAATTCCTCTTAGCTTGCGATGGATTCTCAAATGGAGCTGAGATCCCCA-AATAGAAACCAGCTAACAGGGCCCTAAAATTCCATGGA-GTCTCATTTTCTGCTGCGTTCTCTGGACCAGTGAGGTGCTGTGGAATGTTTACA--ATAGAACCGGGAAG----TGTGCCTCTGGGTAG--------------------------GGCG---GCAGCCCCGGTGGGGAGGGTGAGGTCTGGG-----------CCACCC----CCTCGAGGCCAGCCAGGGCTGAGTGGCGGGCAGAAGCCCCTGATGGAGGATTTTTCTTCACTTGTATCCCAAGCAGGGTGCATGTTTGTGAGGCTTTCATAAAGCACCTGGGATAAAACACAGGCTGGCAGGGATGGCCCAGCTCTTGGAGT-------GCCGTCCGGGCTGGGCCTCTGGTGCTCTGGCCTTCGTGAGTGAGTTC---------------------------TTCTATGGTGGAGACTTAAGCAGATAAAATATTCCTTAT s canFam1.chrUn 89171456 879 - 91062872 TCCCCTTCCCATGAGGATG--GGTCACGTTGTGTGAAg---acctca--------ttgtaacttagttacatctgcaaagaccctgtggccaggaaa--------tttgtag-tctgag-----gaggtcctggggttaggaacccaaA--------------------------------------------TCAGGGGCAGGTAGGGCAGCTTCATGTAGCCCTACTCGTGACGGCAATCCATTGGTAAGTG-GGATAGCAGGTTATGAGACTTGGCGTGGGGAACAGCTCCATTCTGG------------------------------------AGAGAGGCAGCT-------GCACACGAGCACTCTGAAACGGGTG------------------GCAGGTGCTGATAGAT-----------GCAGCTGATGTGTACAGGCTTTGGGGGATGATTTTGCAATTCTCTGACATCGTGTGCATGCTTCTGTATGTGGGTGCGTTTTACTAGGGAG-ATTATTCCTAGTAAG------------AAACAGATCTGAGCCCCCCAGAATCTAACATCCCTAAGAGTGTCCTGAAAGTCCATGGGTGTCTTCTCTCCTGTGACGCTGACTTGCCCAGTGAGCTGCTGTGGAGTGCTTGTAACACAGGAGCAGGAAGGCTCTTTGGCTCAGGGTTGTGACGGAGCCCGGGGTCTTGGGCCCAGGCGCCTGCAGCCCAGG-GAAGGGGCAGAGTCCCAGGCAGCATCCCCCCTACCCCTGGCCCCAAGGCCAGC-----CTGAGTAGACAG--GAAGCCTGGGGAGGGAGACTTTTCTCAATGTGTGGGACAAGCAGGAAGCGTGTTTGTGGGGCCCTAATGAAG--CCAGGG----AGTACGTCTGTGCTGGGCCGGCACAGATCAAGGTGTTCCCTTGGCTGGCCAAGCGCAGCAGCTGACCCTCAGGCCTCGGAGAATGACTTCATTGCAGGCTTTTTGAGAGGATCATGGTCCCCAGGTGTAAACTTGAGGGGGAAAAATAGTCCTGAT a score=18884.0 s hg17.chr7_random 404295 233 + 778964 TTGggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcggatcacgaggtcaggagatcgagaccattctggctaacacagtgaaaccctgtctctact---------------aaaaaaaaaaaaaaaaaaaaattagctgggcatggtggcgggtgcctgtagtcccagtgagaggctgaggtaggagaattgcttgaacccaggaggtagaggttgcagtgag s panTro1.chr6 161062847 246 - 161576975 TTGggtcgggtgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagatcgagaccattctggctaaaacggtgaaaccctgtctctactaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattagcttggcatggtggcgggtgcctgtactcccagtgagaggctaaggtaggagaattgc-tgaacccaggagg-ggaggttgcagtgag a score=23996.0 s hg17.chr7_random 405641 289 + 778964 ccaaaactgcatccccatcccctgcatcatcttgtgtttctttttggcacttcttactgcctcatcctatattctaacaatttatttcatttactcattgtctcttccattagaaaagagttgagtaaagccaggtatggtagggg-tggtctgtgttgcgcatcttgtatctgcagcccctcgggcagggcctggcctgaaggagatcctcactaaacatttgttgaatgaatgagtGAGTGTAGCTTCCATCCTAGTGGAGCACCTCCAACTGCCACATATGATTCAG s panTro1.chr6 464326 290 + 161576975 CCAAAACTGcatccccaccccctgcaccaccttgtgtttctttttggcacctctcactgcctcatcctatattctaacaatttatttcatttactcatagtctcttccattagaaaaaagctcagtaaagccaggtacggtagggggtggtctgtgttgcgcatgcagtatcttcaacccctcgggcagggtctggcctgaaggagatgctcactaaacacctgttgaatgaatgagtGAGTGTAGCTTCCATCCTAGTGGAGCACCTCCAACTGCCACGTATGATTCAG a score=5692.0 s hg17.chr7_random 407349 387 + 778964 tgcatgagtgaatgtgtgcatggatggataaatgaatggatggatgaatggacggacgga---tggatggatggatg------gatggatggatggatggatgaatgaatgagtgaaca-aatgaatggatgcatgagtgaatgtgtggatgggtgaatgaaggaattgatgcatgaatgaatgtgtgcatggatggatggatggatggatggatggatgaatgaatgaatgggtgaatgATTCATGCTGACCTCT-TCTCCCTCAATACCCCATATTTAGACTCAATTAACTCAGAGGACTTCGTGTCTCTGGTCAAGAAGTAAGAAGGCATTTTTTCACCGTTAGAAAATACAAAGCTATGGGGGTGGTGGACAGGAATGAGGGGCAGTA---CCCAGC s mm5.chr5 136499583 294 + 149219885 TGAATGAGTAAATGGATGCATGGATGGATGGATGGATGGGTGGATGGATG-ACAGATGGAATTTGGACAGATAGGTGACACAGGATAGGTGGATGGATGG-----TGGGTGAGTGTACGTGATGAATGGATTGACG-GTGAGTGC-TGGATGGAGGGTGGAGAGGAGTGCTGGGTGGGCAGATG-----------------ATTGATGG-TGAATG--TGGACGGACAGACAGATGAATGGCTCACACTGACTCCTGTCTCC-------------------------------------ACTGCTTG-----------GGAGTAAGAAGCCACCT-------------------------------GGGGAGGAAGGAAAAGAGGAGCAGTGGTTCCTAGT a score=18792.0 s hg17.chr7_random 407736 272 + 778964 GGCGCCAGG--GGCTGAG-GCGCCGTTTTGGGCAGTCTGAATATTTGGACATAGCAGCCGACAGGACACC--CTGTC---CTTCCACAGCTGTTCCTG-GGAGTCAAAGCACATCTTTGTTTGTGGGACTCTTAGCAACTGTTGCTTTTTTTGAAGGACAAGCATGAACCAGCTGTCACCACACAAGACGTAAAGCAGAAAATGTC-GAGTCTTCAGCAACAGGCTTGTAAAACAAGAAGAAAATAATTGTCTGGGCTCAGGGGCG-CTTTCATTTC-------------TTCTCA s mm5.chr5 136499877 270 + 149219885 GCCACCAAACCGGTTAAGCTCTCTGTTTTGGGTGGCCTGAGCACTCAGATTTGGCAGCTGTC----CCCCAGCTGTC---CTCCTCCAGCTGTTCCTG-GGAGTC--------TCTTTGTTTGCCTAGTTCTTAGCAACTGTTGCCTTTTCTGAAGGAC-AGCATAAACCAGCTGT-----CACAGGAGGAAAAGCAGAAAG-GTT-GGCCCTGCAGGGAGACACTTGGGACAC-AGAAGACATTCACCGGGT-GGTTCTGGAGCGTCCTTCATTTCTTACCCAGCTCCTTTCTCA s galGal2.chr14 4302023 274 + 20603938 GGTGCCAAAGGGTTAAAGCATTTTGTGTGGGTCAGTCTGAATATCTGAATTTAGCAGCTGACAGTGCATGGTGTGTCAGTCCCTTACAGCTGTTCCAGAGGATTCAAAGACCTTCTTTGTTTCTTGAAATCTTAGCAACTGTTACTTTTTTCCAAAGAC-AAGACAGACCAGCTGTTACCTCACAAGATGCAATGTACTTCAGGTCAAAATCTTTAGCAAGGAACTTGTAAAGCAAGAACTAAATCATTGTTTGGGTTC--------GTCAGATTTT-------------TTTTCA a score=629.0 s hg17.chr7_random 408008 137 + 778964 CAGCCTCCACCTCCTCATGAACCAGCGAGGCTTGCGTAATTCCCACTGAGCCCAGCTTTGCAGCAGCAGAAAGAAGCTCAGAAGCAGACCCACCTTCTAAAGAGGCTCCCAATTAAATGCAGAGAGAAATGCAAACC s mm5.chr5 136500147 112 + 149219885 CAGGCCCTTTCCCC------ATCACCTTGGCC-------TTGTCACAGAG--CAGCTTGGTGG--GCCTCCATGGGCTAAAAACCAGG-CAGCTCTCTAAAGCAGCTCTGAAT-------ATAAACAAACGCAGACC a score=156890.0 s hg17.chr7_random 408753 1804 + 778964 gaagcaaatctcagatacagcatttcattttaaatacttcaatatctagctctaaaatacacttgttaaaacataaccacaatccccattaccaTCtgccatgagttggatgtggtttgtccctcctgaaatttgatcctcaatgtggtgatgttgggaggtCCATGAATGTAACCttttatattaattaatataattCATGTTACACATATAACATACACATAACAGTAGGAAGATACAACATGAAAATATCTTAAAAAGAGACAAAGACAGAGAAAAACCATGTCTGtatatacatatatataacatgttatatatatatacacacacatataacacgttttatatatacat------------------------------------------------------atatacgtatatatacgtatatatacgtatatatacgtatatatatatatatacgtatatatacgt----------------atatatatatatatacacatatatat--------atatacatacatatat----------atatatatatgtatatatataCCAAAAAcattccaggaggctcaatatctgattaacagcagttccagaaagtaaaataaaatagaaacttgtcagaaataaaagaaaaatttctctaaactgaagaacatgagtgtcttggttgacagagcccacaagattttcagtcctagtaaaaggatctcttacactgtacttccagggataagaattttccaaaagctcccatagagaaaagtcagttcacctacaaaggactgacaataagaatggctcaaacttctcaaaagaaacactagatactagaggacaatgaaacgaagcctccaacattctgaaggaaacttcctttcaacctagacttttatacccagctaaactagcattcatgtttgtagttataacaaaggcatttccCCAGTATACTTGATCAATACTTTTTAACTTTCAGAATTTACTTACAAAGCATAAAAGGCATAATTCTAGttttttaaaaaatatataaatattatCAATATGGACAATGCAAAATGAAAAGTTCAGATAACAAAAACATAATAAAATTTTGAAAAGGAAAGCTAAGCAGGGTGGATATGTGAAGACCTTTGCCTTTTAAAATGGAGAATCggccaggtgtggtggctcacacctgtaatcccagcactttgggaggccaaggtgggcggatcacgaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaaa-ttagctgggcgtggtggtgggcacctgtagtcccagctactcgggaggctgaggcagaagaatggtgtgaacatgggaggtggagcttgcagtgagccgaaatcgtaccactgcactccagcctgggcgacagagcgagattatgtctcagaaaaaaaaaaaaTGGAGAATTAAAGAATACAGTTCACAATGAAATTGTAAAGGGGTTAGTGTATCATTTAAAATTTAGGATTTTAGAAAGGAAATAGTAAAAGATTTTAAAATGGTGATACAACTATACTGGGAAGATGGAGAGAGAAGGTGGGGTCATCTGGCATTGCCCAAAGTCAACAGAGGGTGCTGAAAATTTTAGTTATTATTtactaccactctgacccaagccagcattcatctctcatctagaatattgACATGGTTGTTCTTGCAGTTAGAGATTTTATTAAAGTATAAATCAGGTTTTTACTCCTGTT-AATGACTGACTAGGTTGTTTAGAT--TGAGCTTTCTGGAGAGATcaactagaaaaccttgatgaaaggttaaaaacatatttttgaaagcatcagagagctaccacagcagaga s panTro1.chr6 492150 1895 + 161576975 gaagcaaatctcagatacagcatttcattttaaatacttcaatatctagctctaaaatacacttgttaaaacataaccacaatccccattaccaTCtgccatgagttggatgtggtttgtccctcctgaaatttggtcctcaatgtggtgatgttgggaggtCCATGAATGTAACTTTTTACATTAATTAATATAATTCATGTTACACATATAACATACACATAACAGTAGGAAGATACAACATGAAAATATCTTAAAAAGAGACAAAGACAGAGAAAAAACATGTCTGtatatacatatatataacatgttatatatatatacacacacatataacacgttttatatatatatttatttatatatttatatatttatatatttatatatatatttatatatttatatatatatttatatatttatatatatatttatatatttatatatatatttatatatttatatatatatttatataaatatttatatatatatttatataaatatatatatttatatttatataaatatatatatttttataaatatatatatatatatatatataCCAAAAAcattccaggaggctcaatatctgattaacagcagttccagaaaataaaataaaatagaaacttgtcagaaataaaagaaaaatttccctaaactgaagaacatgagtgtcttggttgacagagcccacaagattttcagtcctagtaaaaggatctcttacactgtacttaaagggataagaattttccaaaagctcccatagagaaaagtcaggtcacctacaaaggactgacaataagaatggctcaaacttctcaaaagaaacactagatactagaggacaatgaaacgaagcctccaacattctgaaggaaacttcctttcaacctagacctttatacccagctaaactagcattcatgtttgtagttataacaaaggcatttccTCAGTATACTTGATCGACAATTTTTAACTTTCAGAATTTACTTACAAAGCATAAAAGGCATAATTCTAGTTTTTTAAAAAATATGTAAATATTATCAATATGGACAATGCAAAATGAAAAGTTCAGATAACAAAAACGTAATAAAATTTTGAAAAGGAAAGCTAAGCAGGGTGGATATGTGAAGACCTTTGCCTTTTAAAATGGAGAATCggccgggtgtggtggctcacacctgtaatcccagcactttgggaggccaaggtgggcagatcacgaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaaaattagctgggcgtggtggtgggcacccgtagtcccagctactcgggaggctgaggcagaagaatggtgtgaacatgggaggcggagcttgcagtgagccgaaatcgtaccactgcactccagcctgggcgacagagcgagattatgtctcagaaaaaaaaaaa-TGGAGAATTAAAGAATACAGTTCACAATGAAATTGTAAAGGGGTTAGTGTATCATTTAAAATTTAGGATTTTAGAAAGGAAATAGTAAAAGATTTTAAAATGGTGATACAACTATACTGGGAAGATGGAGAGAGAAGGTGGGGTCATCTGGCATTGCCCAAAGTCAACAGAGGGTGCTGAAAATTTTAGTTATTATTtactaccactctgacccaagccagcattcatctctcatctagaatattgACATGGTTGTTCTTGCAGTTAGGGATTTTATTAAAGTATAAATCAGGTTTTTACTCCTGTTTAATGACTGACTAGGTTGTTTAGATGATGAGCTTTCTGGAGAGATCAACTAGAAAACCTTGATGAAAGGTTAAAAATATATTTTTGAAAGCATCAGAGAGCTACCACAGCAGAGA a score=33577.0 s hg17.chr7_random 410557 271 + 778964 agaattaattacaaggccaatttcaagg---------agaagacagaaacccagagagat---gaacacagcagttggaaccacaagaagtgtctacaacaagcagccgagaagctgacaggctgaggtttcaacacatttgcagaggt-aggaaaGATCAAAACTGGAACTTATGGCCTGCCTAGGAAAAGAAATCCTAGTAAATCCTCCAGATTTTGTGCTTTGGCCCAGAAGATTTTGTGTGGACACTAGAAAGAAAGATGAGCTGGGATTAAGCCAGCCT s panTro1.chr6 494045 272 + 161576975 AGAATTAATTACAAGGCCAATTGCAAGG--------GAGAAGACAGAAACCCAGAGAGAT---GAACACAGCAGTTGGAACCACAAGAAGTGTCTACAACAAGCAGCCGAGAAGCTGACAGGCTGAGGTTTCAACACATTTGCAGAGGT-AGGAAAGATCAAAACTGGAACTTATGGCCTGCCTAGGAAAAGAAATCCTAGTAAATCCTCCAGATTTTGTGCTTTGGCCCAGAAGATTTTGTGTGGACACTAGAAAGAAAGATGAGCAGGGATTAAGCCAGCCT s canFam1.chr20 32477290 256 + 61172541 AAAATCAGACATAAGGCTAATTCCTAAGCTGAGCATGAGTGGAATGAGAGCCTGAGAAACCCAGAAAAAAGTAGTTTG--------------------CTAAGCAGTTAAAAAGCTAAT---CAGAGCATTTGGCAGCCTCACAGTGCTAAGGAGAGACAAAAATTATAATTTAGAACCTGCCAAGGAGAAGAGATCTCAGTAAATTTCCCAGATTTTAAAAATAGACCTCTGAAGTGTCATG-----GCTGGTGATAGGGATAAGTCAGTAATAGATCGGCCC a score=89811.0 s hg17.chr7_random 410828 751 + 778964 CCCTGGGA-----CTGAATCTCAGCTCAAATCATCTCAGTCCCTAATTGGATAAGGGTGATCCAGGATTACTAGCACCCCTAGGCTAGCCATTTTTCCAAAGCAATTATacattctctcaaaaggaat-atatcagcctcaaattttctctttaatttttcatatgtaatgttgggaactcaatcaaaaa----caactcagatacaaagagacaagatcatgtaatcaaaacccaggagaagcaaaagacaatacaaaaagatcccctcaggggatgcagatcatggagttaatggacatagactttaaaataattatgctcagtatgttcaaggaaataaaagatgaaattgagaacactggcacgaaactaagaaaaaaaactataaggcacgtggaaatgctagaatcaaaaaaacataaaaattggaactaagaacttggtggatgggtttaacagcagatgagaaacacaagggaaga-aattaataacctggaaaatagat-----gaaaatat---ccagactgcagtacaaagacaggaaaggaaagcagctacagaaaagtgctgaagagcatgtggactatggcaaaaagctccagtttatgtgaattcgagttccagatggaggggag----agaatatggcagaagcaacgtttgaagagatcatgatgaagaattttcctaaactaattaaagacatcaggccacagattcaacaagaacacaaactcccacacaggataaac-cagcatagcgtggtaaa s panTro1.chr6 494317 751 + 161576975 CCCTGGGA-----CTGAATCTCAGCTCAAATCATCTCAGTCCCTAATTGGATAAGGGTGATCCAGGATTACTAGCACCCCTAGGCTAGCCATTTTTCCaaagaaattatacattctctcaaaaggaat-atatcagcctcaaattttctctttaatttttcatatgtaatgttgggaactcaatcaaaaa----caactcagatacaaagagacaagatcatgtaatcaaaacccaagagaagcaaaagacaatacaaaaagatcccctcaggggatgcagatcatggagttaatggacatagactttaaaataattatgctcagtatgttcaaggaaataaaagatgaaattgagaacactggcacgaaactaagaaaaaaaactataaggcacgtggaaatgctagaatcaaaaaaacataaaaattggaactacgaacttggtggatgggtttaacagcagatgagaaacacaagggaaga-aactaataacctggaaaatagat-----gaaaatat---ccagactacagtacaaagacaggaaaggaaagcagctacagaaaagtgctgaagagcatgtggactatggcaaaaagctccagtttatgtgaattcgagttccagatggaggggag----agaatatggcagaagcaacgtttgaagagatcatgatgaagaattttcctaaactaattaaagacatcaggccacagattcaacaagaacacaaactcccacgcaggataaac-cagcatagcgtggtaaa s canFam1.chr20 32477744 709 + 61172541 CCCTGACAAAGTCTTAAAACTAGCCTCCAATTATTTCAGTTTTTAATTGGAT----------CAAAATTTCctgc-ctctcagg------------caaataaaataaaatattctctggagaactataatatcatct----attgtctctacaatcattcatgcataatgtc-aacattcaatccaaaattgccagct---atgccaggaaacaggaccaaatgacaaaaagctaaga----caaaaaacttgacaatagg---tctgtaagcaataca-atattggggtcaacagagatattatttaaaataa-catggttaacatgttgcataaaGCAaggaaaataataaagaatgtcaccataaaattggaatctaaaagtataa-ctaaatagaatttctagagcaaaaa--------------gaattaagaagtcaaaagatgaatttgactgtagattagacatagcagaatagagaattaatgagcc-aaaagtaggtaaacagaaaatattgcttcaagtgcagaggaaaaatagaaaataaaa------ataagagag---tagagacaatataatactttgtaataatatctaataatgtttaactaaaattccagaaagataagagaagaaaaatagagcagaagaaatattgaaaaaacacaggccaaataa-tttccaaaactaatgaaaaatatcgaactgcagattcatgaagccctataaaccccaaaaagaataaatacaaaatatcactgcaaa a score=126785.0 s hg17.chr7_random 411579 1376 + 778964 ccgcaggagctaaagacagagaagaacctaaaatgcagccag-aaaaaaaGGCATTACCggccgggcatggtggctcatgcctgtaatcccaggactttgggaggccgaggcaggcggatcacctgaggtcagcagttcaagaccagcctggccaatatgatgaaacctcatctctaccaaaaatacaaaaattagccgggcatggtggcaggcacctgtaattccagctcctcgggaggctcaggcaggagaatcatttgaacccaggagggagaggttgcaatgagccaagatcatgccactgcactccagcctgggcgacaaaccaacactccacctc--aaaaaaaaaaaaaaaaaaaaaaaagctgagcacggtggctcacacctgtaaccccagcactttgggaggccaaggcgggcggatcacctgaggtcaggagttcgagaccaacctggttaacatggcaaaaccccatctctactagaaaaatacaaaaaaagtagctgggcgtggtggcatgtgcctgtaatcccagttacccagggggctgagacaggagaattgcttgatccgggaggtggaggttgcggtgagccaagattgtgccactgcactccagcctgggcaacagagtgagactccatctc-aaaaaaaaaaaaaaTacaagacagattgcacactcccctgcccactggaaccctccaatggcctccgatctgagttgaaacagaattgtttatgtcagccagcaaggccctgcgtgatctgccctcagccccatacccctcacctgccccagggctctctgctgtcctcccacacgaaacacacttccgcctttcacttgcaattatctgccaaggacagccttcctcaatgtctcagggctccctcccttccctccccaagtctccactgaaatgtgaccttctcagtgcaggaaaaccctcccaatacgcctctcctccccctccagagctctgcggtcctctcagcagttacgtattgctgtgagcagcaatctcacagttacctatctgacgtattttgcgtcttaaccatggttattgtctgtctccctcactagaatactgcctgggcttgattcactgctaaatctctggtgcttaaaacagcgcctgcatacagtaaatgcttaatacatatttgttaaataaatATcaaagaggcaagatcatgtgatcaaaaatcaagagaagcaacagacaatacaaagagatccccccaggggaagcaaatcatggaatttgtggacaaagactttaaaataattctgctcagtatgtttgaggaaataaaagacaaaattgagaacactggaacagaactaaaaagaaaaaaaaatttttttttt s panTro1.chr6 495068 1379 + 161576975 ccgcaggagctaaagacagagaagaacctaaaatgcagccagaaaaaaaaggcattacCggccaggcatggtggctcatgcctgtaatcccaggactttgggaggccgaggcaggcggatcacctgaggtcaggagttcaagaccagcctggccaatatgatgaaacctcatctctaccaaaaatacaaaaattagccaggcatggtggcaggcacctgtaatcccagctactcgggaggctgaggcaggagaatcatttgaacccaggagggagaggttgcaatgagccaagatcatgccactgcactccagcctgggcgacaaaccaacactccacctcaaaaaaaaaaaaaaaaaaaaaaaaaagccgagcacggtggctcacacctgtaaccccagcactttgggaggccaaggcgggcggatcacctgaggtcaggagttcgagaccaacctggttaacatggcaaaaccccatctctactagaaaaatacaaaaaaagtagctgggcgtggtggcatgtgcctgtaatcccagttacccagggggctgagacaggagaatcgcttgatccgggagatggaggttgcggtgagccaagattgtgccactgcactccagcctgggcaacagagtgagactccatctcaaaaaaaaaaaaaaaTacaagacagattgcacactcccctgcccactgaaaccctccaatggcctccgatctgagttgaaacagaattgtttatgtcagccagcaaggccctgcgtgatctgccctcagccccatacccctcacctaccccagggctctctgctgtcctcccacacgaaacacacttccgcctttcacttgcaattatctgccaaggacagcctttctcaatgtctcagggctccctcccttccctccccaagtctccactgaaatgtgaccttctcagtgcaggaaaaccctcccaatatgcctctcctccccctccagagctctgcggtcctctcagcagttacgtattgctgtgagcagcaatctcacagttacctatctgacatattttgcgtcttaaccatggttattgtctgtctccctcactagaatactgcctgggcttgattcactgctaaatctctggtgcttaaaacagcgcctgcatacagtaaatgcttaatacatatttgttaaataaatATcaaagagacaagatcatgtgatcaaaaatcaagagaagcaacagacaatacaaagagatccccccaggggaagcagatcatggaatttgtggacaaagactttaaaataattctgctcagtatgtttaaggaaataaaagacaaaa-tGAGAACACTGGAACGGAACTAAAAAGAAAAAAAAATTTTTTTTTT a score=5684.0 s hg17.chr7_random 414485 59 + 778964 ccctcccctcccctcccctcccttcccttcccttctcttcccttctcttttctcctttc s panTro1.chr6 161071590 59 - 161576975 ccctcccctcccctcccctcccttcccttcccttctcttcccttctcttTTCTCCTTTC a score=91298.0 s hg17.chr7_random 414544 739 + 778964 cttcgccttcccttGTTTGCTATACTCTCTATGTGAGgcctggtacacaataggtgctcagtaaatgattgaagacctgcgtttctcttccaaccttgccactgaatggttgggttcccctgaacaaatcctttaccctctctgggcctcagtttccccgcctcatggctggggatgatTTGCC------------GCTGCTAGGTGGGCTT-ATGGGTCC----------TGGCCTGGGG-TTGGTACCATGTGAGCCCTCTCCTGGAGACCCCTGGTCCTCAAATACAACTG---GCGCTTGAGATTTAGGGTTTCACAGAGTGCAGAGGGGCTGTCTTAGGGCCGCTCATGGAACTGCTCGGAGGAGGTGGTCCAGAAACACCACTCATGCCTGCCCGGCACGCAGTGGATGACCCCGTGGAAGCCTAGACGCCCTCCGTTG------------------AAGGCATCAGGCGGGGTGGATCAGCCGCCTCTCAGAAAACCCTTTCAGTGGGACGGGGCAGGCTGTGTCCCCACAGGAGCGAGAACCGGGCCGCAGGCAGGACTGAGGAATTCCATCTG-CCTGTAATCCCTGCGTGTAGGCTTCTCTCGGGAGGATAAACTTGGGTCTAGGAAATCTCTTTAGATTCCACCCCCACCCCAGGCCCCGCCCAGATATTTTCTTTTCTGGGCTGGACGTCTGCACTTCATCCCCC-----------------------------------------------TCTGTGGGAC-----------GGGATAGGAGCAGGACAATCCCCAGGGCCGGGTTCCTCGATTCTGGGGCACATTCTGG s panTro1.chr6 161071649 738 - 161576975 CTTCGCCTTCCCTTGTTTGCTATACTCTCTATGTGAGgcctggtacacaataggtgctcagtaaatgattgaagacctgcgtttctcttccaaccttgccactgaatggttgggttcccctgaacaaatcctttaccctctctgggcctcagtttccccgcctcatggctggggatgatTTGCC------------GCTGCTAGGTGGGCTTTATGGGTCC----------TGGCCTGGGG-TTGGTACCATGTGAGCCCTCTCCTGGAGACCCCTGGTCCTCAAATACAACTG---GCGCTTGAGATTTAGGGTTTCACAGAGTGCAGAGGGGCTGTCTTAGGGCCGCTCATGGAACTGCTCGGAGGAGGTGGTCCAGAAACACCACTCATGCCTGCCCG-CACGCGGTGGATGACCCCGTGGAAGCCTAGACGCCCTCCGTCG------------------AAGGCATCAGGCGGG-TGGATCAGCCGCCTCTCAGAAAACCCTTTCAGTGGGAGGGGGCAGGCTGTGTCCCCACAGGAGCGAGAAGCGGGCGGCAGGCAGGACCGAGGAATTCCGTCTG-CCTGTAATCCCTGCGTGTAGGCTTCTCTCGGGAGGATAAACTTGGGTCTGGGAAATCTCTTCAGATTCCACCCCCACCCCAGGCCCCGCCCAGATATTTTCTTTTCTGGGCTGGACGTCTGCACTTCATCCCCC-----------------------------------------------TCTGTGGGAT-----------GGGATAGGAGCAGGACAATCTCCAGGGCCGGGTTCCTCGATTCTGGGGCACATTCTGG s canFam1.chrUn 89182966 761 - 91062872 ctttgcctt---ttctacgtaacactctctgtatgaagcctggtatatag-aggtgctcaataaatgattgAAACTGCACGTTTCTCTCCTCACCCAGCCACTGAA-GGTTGAGCATCCCTGGGCATGTCTCTTGTCCTCTCGTGGCCTCCTTTTCCATGCCTCATTGGCAGGGATGACTGGCCCTGGGCCCGACTTCTGCTCTGAGAGGCT-GCAGCCCCAAGAGGGGGTTGCCCTGGGGACTGGCACCAT-CAACCCCTGCCCTGAACATCATGGATCTCCAAATACCACAGCACCCACTTGG----TTGGAGGACACAGGTTATTGAGGGCCAGCCT-----------------CCCCTTGGGGGA---GGCCCAGAAACAC------TGACTGTGTG-CAGCCACAGGAAGTCCAGGCAACAGCCTC----TCCTCCTCTGGGGTGTTCCGGGCCTGGTGAGGGGTCAGGC----TGGCATGGCTAACTGCCCAAGAGCCCTCCT------ACAGGGCGAGATG---------GGGAGTGGGACGTGGAGGG-------------GGGTTTCCACCTATCCTGGGTCTCAGGCATGTGGGTGTCTCTCAGGAGCAGAAACTCAGGTCCAGAAACTCTCCCTCCACTGCACCCCT--------CCCTGGCTGAGAATCTTCCCTCTCAGGCCGCAAGCCTGCATTTCACCCCTCATGCCGGAAAAACATGGTCAGAAGAAGACTATGACCGTCATTCACAGTCCAGGGAGTACTTGGACCCAGGGGCAGGACGAGGACAGTCCCTGGAGCTGTGTTTGGCATTCCTGGGGCAGATTCTGG a score=2537.0 s hg17.chr7_random 415283 40 + 778964 CCACGGAGCTTTCTGGAAACCCTGTTCCCACAGTGTTGTT s canFam1.chrUn 89183727 40 - 91062872 CTGCGGAGATTTCTGGAAGTGCCGTTCCCACACTGTTGTT a score=58533.0 s hg17.chr7_random 415323 517 + 778964 ACGAAGATGGCTTTGGCCTGGAAAGCCTGTCCCGGCCCCACGACCTCGACCGTCCTGCAG-CTCAGACAATGCATCAGTATGAAAACAGGAGACAGGAAGTGGGGGCTGCAAAATGAGAGGCTTTCCCGGAATCCCAAGAGGGGAAGGGGAAGAGCAGCCTGGCATGTGCACAGGCAGAGCCCGTGAGAGGTCACCCCCATGCAGCCCTGGGGAGGGGCCCTGCTCGCTGTCCCCCTTTCTCCCAAGGCCT-CCTGAAGCGGCCTGTGTGTATGGAACCACCTGTATCCTGCCTAGTCTGATTCTTCACCTGCCAAAGATGGGAAGTCCCGTCGAGCCTGGACAGGCAAAGCTCTTTCAGCCAAGAGACTGGGACCCCAACCTCGTTCCTTGAAGAGAAGCGGCTTCTGG-----TTCCTGCAAAGGGAGAGCCCAGGGTCCTTGCCGGA--GCCGTGAGGCCCTGGGCCAGTCTCTCCTCTATGAAGTAAACTACTTTTAGCATGGATCTCAAAAGCTAAGTCCC s panTro1.chr6 161072493 517 - 161576975 ACGAAGATGCCTTTGGCCTGGAAAGCCTGTCCCGGCCCCACGACCTCGACCGTCCTGCAG-CTCAGACAATGCATCAGTATGAAAACAGGAGACAGGAAGTGGGGGCTGCAAAATGAGAGGCTTTCCCGGAATCCCAAGAGGGGAAGGGGAAGAGCAGCCTGGCATGTGCGCAGGCAGAGCCCGTGAGAGGTCACCCCCATGCAGCCCTGGGGAGGGGCCCTGCTCGCCGACCCCCTTTCTCCCGAAGCCT-CCTGAAGCGGCCTGTGTGTATGGAACTACCTGTATCCTGCCTAGTCTGATTCTTCACCTGCCAAAGATGGGAAGTCCCGTCGAGCCTGGACAGGCAAAGCTCTTTCAGCCAAGAGACTGGGACCCCAGCCTCGTTCCTTGAAGAGAAGCGGCTTCTGG-----TTCCTGCAAAGGGAGAGCCCAGGGTCCTTGCCGGA--GCCGTGAGGCCCTGGGCCAGTCTCTCCTCTATGAAGTAAACTACTTTTAGCATGGATCTCAAAAGCTAAGTCCC s canFam1.chrUn 89183767 395 - 91062872 -------------------GTGAAGACTCTTCTGACCCCGTGCCCTTGACCATCCTGCTGCCCCAGACAGCTCATCAGCGTGAGAACAGGAGACAGGAAGGGGGCTCCGGAAAATTAGAGGTTTTCCTGGAATCT--AGAGGGAA-------------------------------------------------------------------------------TCGTTTCCCCGTTTCCGCCCGATGCCTCCCCCAAGTGGCCT-TGTGTTTTGAAGCCCTGGGATCCGGCCCTGTTAGGTCCTTTG-GTGCCAAGTGTGGAACATGGCCCCTGGC--GGGATAGTGATGCCCATGGTCCCAGGAAAGCATGGCCCCCAGTGCGCTTCCCTCAGGAGGGTGGCTTCTGGCCAGTCTCGTGTGCA--------CCAGTTTTTGTGCGGGGCTGCCGCCAGAT---------GGCTCTCC------AAGCAACCCAGCTGTGACAtggcccc----agctatggccc a score=168158.0 s hg17.chr7_random 415840 1841 + 778964 ATTGAggccgggcgcggtggctcacacctgtcatcccagcactttgggagatggaggcaggtgggtcacctgaggtcaggagtttgagaggtcagccttgccaacatggtgaaaccctgtctgtactaaaaatacaaaaattagccaggtgtggtggctgatgtctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaagccttgaggcggaggctgcagtgagccaagatcgcgacactgcactccagcctgggcaacaagagtgaaactccatctttctttaaaaaaaaaaa-GTTCCATTGGggccgggtgctgtggctcatgcctgtcatcccagcactttgggaggtcaagacaggaggatcgcttgagactagcctgggcaacatagcaagacaccatttctacaaataataataaaaaaa---tttagccaggcatactggtggtggtgcacctgtggtcccagatactcaggaggctgagatggagggattgcttgagcctgggtggtcgaggctgcagtgagctatggtcacgccactatactccagcctgggtgacagagaaagaccctatctcaaaaaaaaaaaaaaaaaaaaaaGggttgggcgcagtggctcacgcctataatcccagcactttgggaggccaagaggggtgaataacgaggtcaggagatcgagaccatcatggctaacacgctgaaaccccatctctactaaaaatacaaaaaaattagccgggcatggtggcaggcacctgtagtcccagctactcgggaagctgaggcaggagaatggcatgaacccgggaggcggagcttgcagtgagctgagatcacgccactacactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaacaaaaaa---------------caaaaaaaacaaGCCCTATTGACCCCACCGGTGGCTGGCTGAGGCACTTTATTTGGTCACAATTCCTGTAGCTTGCAGACTCCAGTGGGCTCTGTCTTGTGACCTCGCCCATCTCACTTGAAACTGTTTCTGCCTCCACTGCAGTCTCCATCATGGAACACGAGGTCATCGTAATTCAGATGGCGCTTCACAAGTCTAGGCTTGGGAAGGCAGCACCACTGACCCCTTCCTGACCGGCACGGGGCTCTCTCTTAGATTCCACCCCGACCCCAGGACCCGCCCAGATATTTTCTTTTCTGGGCTGGACGTCTGTACTTCATCCCCGTGTGGGACGGGACAGGACCAGGACAATCCCCAGGGCTGGGTTACTCGATTCTGGGGCACATTCTGGGCTGCGGTTGGCAGAGATCATCCTGCCTTTCTCGCCGGCCACCTCTGATCCCACGTCTTCAGCCCCAAAACCATCCCTGCACCTGCCGATCACAGAGCGACTGTGAGTAGCTGAGCGGTCGTCTGGTCATGACAGTTTATATGGCGTGAGGATGTGGGGCTCCGACTTCTGTCCCGACTACATTTTTGTTCATTTGCTCATTCATTTCTCGTTTGTTCGCTTGGttc-ttttttttttttttttgagacggagtcttgctctgtcccccaggctggagtgcagtggcacgagctcactgcaacttccgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggatgacaggtgcccaccaccacgcctggctaatttttgtatttttaatagagatggggtttcaccattttggccaggctggtctcgaacttctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggtgtgagccaccatgcccggccCTTCACCTGGTTCTTG s panTro1.chr6 161073010 1857 - 161576975 ACTGAggccgggcgcggtggctcacacctgtcatcccagcactttgggagatggaggcaggtgggtcacctgaggtcaggagtttgagaggtcagccttgccaacatggtgaaaccctgtctgtactaaaaatacaaaaattagccaggtgtggtggctgatgtctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaagccttgaggcggaggctgcagtgagccaagatcgcgacactgcactccagcctgggcaacaagagtgaaactccatctttcttaaaaaaaaaaaaaGTTCCACTGGggccgggtgctgtggctcatgcctgtcattccagcactttgggaggtcgagacaggaggattgcttgagactagcctgggcaacatagcaagacaccatttctacaaataataataaaaaaaaaatttagccaggtgtgctggtggtg---cacctgtggtcccagatactcaggaggctgagatggagggattgcttgagcctgggtggtccaggctgcagtgagctgtggtcacgccgctatactccagcctgggtgacagagaaagaccctatctcaaaaaaaaaaaaaaaaaaaaa-GggtcaggcgcagtggctcacgcctataatcccagcactttgggaggccaagaggggtgaataacgaggtcaggagatcgagaccatcatcgctaacacgctgaaaccccatctctactaaaaatacaaaaaaattagccgggcatggtggcaggcacctgtagtcccagctactcgggaagctgaggcaggagaatggcatgaacctgggaggcggagcttgcagtgagctgagatcgcgccactacactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaacaacaaaaaaaacaaaaaCAAACAAAAAAAACAAGCCCTATTGACCCCACCGGTGGCTGGCTGAGGCGCTTTATTTGGTCACAATTCCTGTAGCTTGCAGACTCCAGTGGGCTCTGTCTTGTGATCTCACCCATCTCACTTGAAACTGTTTCTGCCTCCACTGCAGTCTCCATCATGGAACACGAGGTCATCGTAATTCACATGGCGCTTCCCAAGTCTAGGCTTGGGAAGGCGGCACCACTGACCCCTTCCTGACCGGCACGGGGCTCTCTCTTAGATTCCACCCCGACCCCAGGACCCGCCCAGATATTTTCTTTTCTGGGCTGGACGTCTGTACTTCATCCCGGTGTGGGACGGGACAGGACCAGGACAATCCCCAGGGCTGGGTTACTCGATTCTGGGGCACATTCTGGGCTGCGGTTGGCAGAGATCATCCTGCCTTTCTCGCCGGCCACCTCTGATCCCACGTCTTCAGCCCCAAAACCATCCCTGCACCTGCCGATCACAGAGCGACTGTGAGTAGCTGAGCGGTCATCTGGTCATGACAGTTTATATGGTGTGAGGATGTGGGGCTCCGACTTCTGTCCCGACTACATTTTTGTTCATTCGCTCATTCATTTCTCGTTTGTTCGCTTGGttctttttttttttttttttgagacggagtcttgctctgtcccccaggttggagtgcagtggcacgagctcactgcaacttccgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggatgacaggtgcccaccaccacgcccggctaatttttgtatttttaatagagatggggtttcaccattttggccaggctggtctcgaactcctgacctcaggtgatccgcccaccttggcctcccaaagtgctgggattacaggtgtgagccaccatgcccggccCTTCACCTGGTTCTTG a score=50137.0 s hg17.chr7_random 417681 431 + 778964 AGTGCACCTGGCACTGTGTCTCTGAGATGGGGGCAGTAACGAACTCGTGCAAGACATCATCTTGGGAACACGTGATGTGAGCTCTCACAGAGGTCTGAGCAGAATGCACTGGAGGTGGGTGGGGGAAGGGGAAGGGGACCCaaaa-cttccta-tggaggtggcattgaaacaggctttaaagtatatgtaggagttcgccaggCACATCGCCTGGGGCCTGGGCATTAGGGGAAGGAGGCCCCACATCC---------TTCTCTCCTTGGCAAGCTACTCTGACTCCAGGCTA-------GTCTCTTTGGGGTTGGCTTTGTGGGATCTGTT---GGAGCTGAGCGTCCAGACGAGACCTGATGTCTTGGTCCGGGGTCTAAACCCTGGAGCTTGTGTCTTGGTCCCGGGTCTAAACTCTA-GCCCTCTGTGGGCCATTCCCAAGTCCGGGT s panTro1.chr6 161074867 432 - 161576975 AGTGCACCTGGCACTGTGTCTCTGAGATGGGGGCAGTAACGAACTCGTGCAACACATCATCTTGGGGACACGTGATGTGAGCTCTCACAGAGGTCTGAGCAGAATGCACTGGAGGTGGGTGGGGGAAGGGGAAGGGGACCCAaaagcttccta-tggaggtggcattgaaacaggctttaaagtatatgtaggagttcgccaggCACATCGCCTGGGGCCTGGGCATTAGGGGAAGGAGGCCCCACATCC---------TTCTCTCCTTGGCAAGCTACTCTGACTCCAGGCTA-------GTCTCTTTGGGGTTGGCTTTGTGGGATCTGTT---GGAGCTGAGCGTCCAGACGAGACCTGATGTCTTGGTCCGGGGTCTAAACCCTGGAGCTTGTGTCTTGGTCCCGGGTCTGAACTCTA-GTCCTCTGTGGGCCATTCCCGAGTCCGGGT s canFam1.chrUn 89184482 375 - 91062872 AGCGTCTGTGGCACTGTGTCTT----ATGAGTGTGTTAGTGGGCTCTGACGGCACATCGCATGGCTGCAGCGTGGTATGAACTCT-----AGGACT-----------------TGTGAATAGAGGAGGAGGGAGGTGATGGGAAGGCTTCTTGCTGGAGGTGGCCTTG------------AAGCGTGGATGGGAGTTCACCGAGGATGGCCCTAGGGG--TGGGCGGTAAGGTGGGGAAA-GCCATGTCCCTCTTTTGGCTCTCCCCGTGGTGTGCTG-TCTGGCACTAGGTTGCCATCATGGCCTCTGGGCGGTGTCTATGTGGGACCCCTTGGGGGGGCTGAGCATCCACATGGGAGTTG--------------------------------TGTGTCTG----CCTAGCCCAAAGCCTAGGTTCTGTGAGAGCCATACCCCTATCCGTGC a score=25718.0 s hg17.chr7_random 418112 312 + 778964 CTCACTGttttttc-ttttttttgagatggagtctcgctctctcgcccaggctggagtgcagtggtgcgatttcagctcactgcaagctgtgcctcccgggttcatgtgattctcctgcctcagccccccgagtagctgggactacaggcgcacaccaccaagtccagttaatttttttgtatttttagtagagacagggttttaccgtgttagccaggatggtctccatctcctgacctcgtgatctgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcccggccGAGTCCAG s panTro1.chr6 161075299 295 - 161576975 CTCACTGttttttctttttttttgagatggagtctcgctctcttgcccaggctggagtgcagtggcgcaatttcggctcaccgcaagctgtgcctcccgggttcatgtgattctcctgcctcagccccccga------------------gcacaccaccaagtccagttaatttttttgtatttttagtagagacagggttttaccgtgttagccaggatggtctcgatctcctgacctcgtgatctgcccaccttggcctcccaaagtgctgggattacaggcgtgagccaccacgcccggccGAGTCCGG a score=21413.0 s hg17.chr7_random 418424 184 + 778964 GTCTCGCGGTTATCGCAAAGGCAGTACATCCCAAACCCAATGCATGCTGTCCATATTAAAAACAAAAGCaaaaatgaaacataagatggatgttgtgggggtgtgggggacatggaacccttg---tgcgctgctgtcgggaatgtgagttggtacagccacagtggaaggaagcttggcatttccc s panTro1.chr6 161075594 184 - 161576975 GTCTCGCTGTTATCGCAAAGGCAGTACATCCCAAACCCAATGCATGTTGTCCAtattaaaaacaaaaccaaaaatgaaacataagatggatgttgtgggggcatggggcacatggaacccttg---tgcgctgctgttgggaatgtgagttggtacagccacagtggaaggaagcttggcatttccC s canFam1.chrUn 89184857 148 - 91062872 ATCCCATTGTTTTCTCAAAGCCAGTGTGTCCAAATCCCAGCGCACATCAATCACGTGAAAAAC-AATCCAAACATGG----------GGAAATGGCAAGGATGTGGGGTGGCTGGAATGCTCGGCAGGCGCTGCTGGTGGGA-----------------CACGGT----------TCGGCAGTTCC- a score=3373.0 s hg17.chr7_random 418608 562 + 778964 aggaaagttaaacatgcagtgaccacag---gacccagcagtgccactcctaggtacacagcccgaagaattgagaacaggtcttcaaacacacgcctctacatgagcgtttggagcagcactgcttacaggagccacgatgtgaaaacctcgcacgtccgtcagctcgagaggacaaacagtgtggcctctccacgcaagggaagtccctcagccacagaaaggagtgaatcacctgacacgcagcacagcgcggacgaacctgggacacgtaatgccagtgaaatgagccagacgcaacaggccaaatgctgcgcaattccgcttctgtgaa-gtagcaggaacaggcagttgcacagagacaggaagtcgattcggggctgtcgggggctggggcgggtgtcgggggacagctgctgaatggcacagggtc------------tgcaaaggtcctggatctggatggaggtggtggttgcacagcacggtgaatgtgtcgacgtggctgaattgtgcactttaatacagttgattgttaactttaagttatgtgacttttacctcaattaaaaaa s canFam1.chrUn 89185005 461 - 91062872 GGAGCAGTTAGCTGTG----GGCTCCAGTGTGACCCAGCAATGCCACTCATGGTT--GTAGTCCTGAGAACAGGAGATGGGTGCTGGAGCTCTCACC------TGCATGCCTGGCACA--------CACAGCAGCCCTGGGGTG--------------------------GGGGGCATCCAGTGT---CTGTTAGCTGGTGGGCAG---CCcagccacatggaggaatggggtg-ctgatacccaccaccatgcag-ctgacctggacagcgctatgcacaggccagaaggcagacaccagtggccacgtggcctatgattctgctcatgtaaaggtgtcccaaatgggcgaac-cacagagacag--agtaggt--------------------ggtgggtgcagg---------gctgagagggacagggtcttcctctgggggtgaaaatgtcttaga-atagatatgagtggtggttgt--------gtgactttgcagatgt------accatgga--------------attgttaactgtaTGTTGC-TGGC-TTTACTTTTGCTAAAATG a score=-2654.0 s hg17.chr7_random 419492 279 + 778964 TGCTCAAACAAACTCCTCTT---CTCAGCCCCCTCCAGCCTGCAGGGCATCTGGGATGAAGCCCCAGGTTTTCCTACTATGGGGTTGAGAACCTGCCCTTCCCTGTCCAGGGCTGTCCTGCCTCTTGCCCTCTCCCTGACTGAACGTGCGTTGAGTGCCCGGGTCGGTCTCCGGCTGTGTTCCTGCCTCCCCAACCTTCAGGAGGCAATGTGAACTGCTGAAAAATTACTCTGGTATGAGCGCAGTTTGGCCTGAGGTTTCTGTTTCTCCCGGGCGACTGCA s canFam1.chrUn 89185477 152 - 91062872 TGCTTGGACCAGTTTCTCGTGGCTTCAG-----TTTTGCAGAGAGGGCA---GGCATGGCACTCCTGGC------------AGGTAGAGGTCCTGCCCACACCTCT----GATCTCCATGGCACCTGCCATCT------------------------------------------------------------------GGGCGGCCCTGGCATCTGCTGG----------------------------------------TCCCCCTCCTAGGTAGCCAGG a score=20460.0 s hg17.chr7_random 419771 155 + 778964 GGGCCTCAGTGTTGATATAAACAATTTGCACTGCCGTCAGGGGAGCGGTCCCAACCAACCTCTCTCAACTCCCTGGCTTCAGGTTCCTGCCGAC-------TCTATTATTGCTACTATTTCTAGTAATTTCTACAAA----GGCCCAGAGCCCCTCACTTGTGATG s panTro1.chr6 161076945 159 - 161576975 GGGCCTCAGTGTTGATATAAAGAATTTGCACTGCCGTTGGGGGAGCGGTCCCAACCAACCTCTCTCAACTCCCAGGCTTCAGGTTCCTGCCGAC-------TCTATTATTGCTACTATTTCTAGTAATTTCTACAAACAAAGACCCAGAGCCCCTCACTTGTGATG s canFam1.chrUn 89185629 161 - 91062872 GAGGCTCCACATTGCTGGACACAGACTGCACTGCCAT---GTGGGCTTTACCTTCCTACCACCCGCAAGTCTCGGGTTTGAGAT--AAGCTGACATGTACAGCTGGTATTGTTCTTATTTTTAATAATTTCTAAAAGTGAAGGCCCAGAGTCTGTCCCTCAGGATA a score=33901.0 s hg17.chr7_random 419926 375 + 778964 CACCTGCCTtctctctcttctcttctcttctcctcttctcttctccttctctctctctctctctgtctctctgtctctctGtttctttttttgagacagagcttcgcccttgttgcccaggctggagtgccatggcgcgatctcagctcactgcaacctccacctcctgggttcaatcgattctcctgcctcagcctcccaagtagctgggattacaggcgtgcgccaccacatgtggctaatttttgtatttttagtagagatggggtttcaccatgttggtcaggctggtctcgaactcctgacctcaggtgatctgcctgccttggcctcccaaagtgctgggatgacaggcatgagccaccatgcctggcc s panTro1.chr6 161077104 371 - 161576975 CACCTGCCTtctctctcttctcttctcttctcttctcct--tctc--tctctctctctctctctgtctctctgtctctctGtttctttttttgagacagagcttcgcccttgttgcccaggctggagtgccatggcgcgatctcagctcactgcaacctccagctcctgggttcaattgattctcctgcctcagcctcccaagtagctgggattacaggcgtgcgccaccacatgtggctaatttttgtatttttagtagagatggggtttcaccatgttggtcaggctggtctcgaactcctgacctcaggtgatctgcctgccttggcctcccaaagtgctgggatgacaggcatgagccaccgtgcctggcc a score=40474.0 s hg17.chr7_random 420301 310 + 778964 CACCTGCCATTTCTAGTGAGACCTCCTGGTTTGTGTAGGAGCAGTGGATGACG-ATGTGATGATTTCCCTAAGAGCGGGTCCCATA-CAGCCGATACCTGAGGTCGATTAGAAGGATGCAAAGGTTTGAGAAAGTATTTGCAGCGTCTCACCCTTGATTTCCGTCTCCCAGTGATTCAGCCTGGGGATGGATGTGAGCAAGGGACTCGCAGCTCCAGGGAGGCGTCTGTGCCATTCTGAGAGATTGTGAGATGGCCCGTTGTCATGGTGACCGGAGAGTGATGAGGTGTTTACTTGGCAGGGAGTTCAGGGG s panTro1.chr6 161077475 310 - 161576975 CACCTGCCATTTCTAGTGAGACCTCCTGGTTTGTGTAGGAGCAGTGGATGACG-ATGTGATGATTTCCCTAAGAGCGGGTCCCATA-CAGCCGATCCCTGAGGTCGACTAGAAGGATGCAAAGGTTTGAGAAAGTATTTGCAGCATCTCACCCTTGACCTCCGTCTCCCAGTGATTCAGCCTGGGGATGGATGTGAGCAAGGGACTCGCAGCTCCAGGGAGGCGTCTGTGCCATTCTGAGAGATTTTGAGATGGCCCGTTGTCATGGTGACCGGAGAGTGATGAGGTGTTTACTTGGCAGGGAGTTCAGGGG s canFam1.chrUn 89185790 295 - 91062872 CAGCTGGCATTTATAGTTAGGATTTGAGGCTTACACGGGAACAATCATTGACACGTGGGATGATTTACTTACACGTGGGTCTCTCAGCAGCAGGTTCCTACCATCCTGTAAAA------------TCCAAAATGTGTTTCCCATGGGCCAACGTAGGAATCTCTCTCCCACTGACTCCCGACGGGCAGGAACATGA-CAGGTGATTCTTGGTGCCA-GGAGGTGCTGCTGCCATTCTCAGAGATTATGAGAGGG-CCATTGTCATGGCAACAGGCACAGG--GAGGTGTTTCCGTGGCCTGGGCTTCGGGAG a score=99729.0 s hg17.chr7_random 420611 1103 + 778964 ATGCGCCGTCCTCCGCAGGAGGTGATTGCCGGTGTTTGTAGAGCCCTGTGGTCCATCCCCTCAGCACCCTGGATTCCCCTCCCCGGGGTTTTGTCCACGAGGAGCTGCTTTTGACCGTGTGAGGTCACAGCACTGGGTTTCCAACAGCTCCCTGGAGACCTGGGCGGAGGCCACATGCCATTCAGCACACGGCAGGGCGTCCAC--CTCACTTTGGGCTGTCCGAAAGGACTGCGTGTAGGCGGAAGGGCGTGTGGACATGGATCCACTGGTAATGCCCAGCTCTCCTCTTCATTTGCTCTCCCTGGATGGCTGTGGTGCGCTGGGGGGCCCTGCCTGCATCTTCATCCGTGGGAGTGGAGGCACTCCCTCTCCATCAAAGCCACCCTCCTGCACCCCTCCTGACCAGGCAGGGGATTTGGAATCTCACTGCTTTTAGAGGAGATATCTCTGTTGGCAGAGAGGTCCTGATCTTGGCCTGGCCGAGTTTCCCCATCACCTGCAGGCTCATTTCACGGATGGAAACCCATTTCCACTGGCGAGTTTGGGTGGGCGCGGGACCCTTCGGGTAGGATTTGCAGTGGACTGGCCAGTTTGAGTGGGCACAGGACCCTTTGGGTAGGATTTGCAGCGCAGTGGACAGTTTGGGTGGGCGCGGGACCCTTCGGGTAGGATTTGCAGC-----GGAC---------------------------------------------TGGCCAGTGTGGGTGGGCGTGGGACCCTTCGGGTAGGATTTGCAGCGGACTGGCCAGTGTGGGTGGGCGTGGGACCCTGTGGGTAGGATTTGCAGCGGACTGGCCAGTGTGGGTGGGCGCGGGACCCTTCGGGTAGGATTTGCAGCAGAGCCGATGGGCCGCTGGGAAGAATTCCCAAGTGCAGGCTGAGAGGAGCCTGTGGTGGCT-----GGCAGTGGAGACACCAGCCGCCAGGCCCGCTGAGGAGGATGCAGTGGAGACCGGTCAGCCTTGGAGCTGGCACCCATTTGTGCAGCTGGACACAGGACTGCTGGGTGTTGTG------TTTTTTTGTTTTTTTTTACAGCCCCAGGCATCAGGCCTCTGAGCGTCTGAGAAGCACCAGCCCCTTCCTGAGGAGCCCCGTCTTCTGGGTGTGCAGCTGGT s panTro1.chr6 161077785 1166 - 161576975 ATGCGCCGTCCTCCGCAGGAGGTGATTGCCGGTGTTTGTAGAGCCCTGTGGTCCATCCCCTCAGCACCCTGGATTCCCCTCCCCGGGGTTTTGTCCACGAGGAGCTGCTTTTGACCGTGTGAGGTCACAGCACTGGGTTTCCAACAGCTCCCTGGAGACCTGGACGGAGGCCACATGCCATTCAGCACACGGCAGGGCGTCCACGACTCACTTTGGGCTGTCCGAAAGGACTGCGTGTAGGCGGAAGGGCGTGTGGACATGGATCCACTGGTAATGCCCAGCTCTCCTCTTCATTTGCTCTCCCTTGATGGCTGTGGTGCGCTGGGGGGCCCTGCCTGCATCTTCATCCGTGGGAGTGGAGGCACTCCCTCTCCATCAAAGCCACCCTCCTGCACCCCTCCTGACCAGGCAGGGGATTTGGAATCTCACTGCTTTTAGAGGAGATATCTCTGTTGGCAGAGAGGTCCTGATCTTGGCCTGGCCGAGTTTCCCCATCACCCGCAGGCTCATTTCACGGATGGAAACCCATTTCCACTGGCGAGTTTGGGTGGGCGCGGGACCCTTCGGGTAGGATTTGCAGTGGACTGGCCAGTTTGAGTGGGCACGGGACCCTTTGGGTAGGATTTGCAGTGCAGTGGACAGTTTGGGTGGGCGCAGGACCCTTCGGGTAGGATTTGCAGCGCAGTGGACAGTTTGGGTGGGCGCGGGACCCTTCGTGTAGGATTTGCAGCGCAGTGGACAGTTTGGATGGGCGCGGGACCCTTCGGGTAGAATTTGCAGCGAACTGGCCAGTGTGGGTGGGCGTGGGACCCTGTGGGTAGGATTTGCAGCGGACTGGCCAGTGTGGGTGGGCGCGGGACCCTTCGGGTAGGATTTGCAGCAGAGCCGCTGGGCCGCTGGGAAGAATTCCCAAGTGCAGGCTGAGAGGAGCCTGTGGTGGCTGGCAGGGCAGTGGAGACACCAGCCGCCAGGCCCGCTGAGGAGGATGCAGTGGAGACCGGTCAGCCTCGGAGCTGGCACACATTTGTGCAGCTGGACACAGGACTGCTGGGTGTTGTGtttttttttttttttttttttttACAGCCCCAGGCATCAGGCCTCTGAGTGTCTGAGAAGTACCAGCCCCTTCCTGAGGAGCCCCGTCTTCTGGGTGTGCAGCTGGT a score=19062.0 s hg17.chr7_random 421714 130 + 778964 GGGGGCATTCCTTCTGGGACTTGTTATTTATTTAGGTGGTTTTAGTGGTATTTATGTCTGCACAGTGGCACACAGTAGTTTACTTTTATTATGACATAGTTCCTTCCAATTTGTTTGTGTTGTGTTAACA s panTro1.chr6 161078951 130 - 161576975 GGGGGCATTCCTTCTGGGACTTGTTATTTATTTAGGTGGTTTTAGTGGTATTTATGTCTGCACAGTGGCACACAGTAGTTTACTTTTATTATGACATAGTTCCTTCCAATTTGTTTGTGTTGTGTTAACA s canFam1.chrUn 89186503 103 - 91062872 GGGGCCATCATGTCTGGGATTTGTCATTTATTTAGGCCTTTTGAGTGGTATTTGTA-----ATGGTGACACAGATT----------------------GTTCCTCCAGATTGACTTGCGTGGCACTAGCA a score=18452.0 s hg17.chr7_random 421844 210 + 778964 TTACAGCAACATGCACGAAGCTGAAGAAATTCCACCCTGATCCCAATAGCTCAGCACTTGAAATTTGTTGTTGTTGTTGTTAATGGCTTCTTATTTAAtttctttttttccaacttttattttaggtttgggggtacgtgtgcaggtttgttacgtggggatgcggcgtgatgctgaggtctagggtatggatggccccagcagctgggt s panTro1.chr6 161079081 210 - 161576975 TTACAGCAACATGCACGAAGCTGAAGAAATTCCACCCTGATCCCAATAGCTCAGCACTTGAAATTTGTTGTTGTTGTTGTTAATGGCTTCTGATTTAAtttctttttttccaacttttattttaggtttgggggtacgtgtgcaggtttgttacgtggggatgtggtaagaggctgaggtctagggtatggatgaccccaccagccgggt a score=64345.0 s hg17.chr7_random 422400 738 + 778964 aggggaggggagggaagggagcagaggggaggggagggaagggAATTAGAAATTAACAGGCTGggcagggcaccatggctcatgcctgtaatcccagcacttcgggaggccaaggcaggtggatcacctgatgccaggagttcaagaccagcctgggtcacatagggagacctcatctctataaaaatattaagaaaattaaaaattaaattaataaaataaaaataaaaataGAAGATGAAGATGCAAGTCCCAGTGAGGCTAGGGGCAGAGTGTACACAGGAGGGTGTGAGCACAGGCGAGAGCCCTGCTCACCCTCAGAAGCAGATGGCATGACTCTATGTGTGCACA--------------------------TCTAGGAAAgtacgtgtgcatgtgtg------------------------------tctaggtaagtacgtgtgcgtgtgtgcatatctaggtacgtatgtgttagtgtgtgtctaggtaagtacgtgcgtgagcatgtgcacatatgtgtgAACATGTACATATCCAACTAAGTACATGTG----TGTGCACATCCAGAGAGGTACATGCATGTGACCATATGCACATCTAGTTAAGTACATGTGTGAGCGTGTACACATGCATGCAAACACACCCCTTACATCCACCACTCTCGGAGTAAACTGAGTATGTCCAGGTGTGCGCACAGCTATGCATCTGGGTAAGTGCGTGTGTTTTAATGCATGTGCACACACGACTCCACGTACCCTCCTCCTCGGTGGCAACAGTACATCCTTGCCT s panTro1.chr6 505458 797 + 161576975 aggggaggggaggtaagggagcggaggggaggggagggaagggaaTTAGAAATTAACAGGCTGGgcagggcaccatggctcatgcctgtaatcccagcacttcgggaggccaaggcgggtagat-acctgatgccaggagttcgagaccagcctgggtcacatagggagacctcatctctataaaaatattaagaaaattaAAAATGAAGttaataaaataaaaataaaaataGAAGATGAAGATGCAAGTCCCAGTGAGGCTAGGGGCAGAGTGTACACAGGAGGGTGTGAGCACAGGCGAGAGCCCTATTCCCCCTCAGAAGCAGATGGCATGACTCTATGTGTGCACACCTAGGTAAgtacgtgtgcgtgtgtgtctaggtaagtacgtgtgcatgtgtgcatatctaggtacgtacgtgttagtgtgtgtctaggtaagtacgtgtgcgtgtgtgcatatctaggtacgtatgtgttagtgtgtgtctaggtaagtacgtgcgtgagcatgtgcacatatgtgtgAACATGTACATATCCAACTAAGTACATGTGAGTGTGTGCACATCCAGAGAGGTACATGCATGTGACCATATGCACATCTAGTTAAGTACGTGTGTGAGCATATACACGTGCATGTAAACACACCCCTTACATCCACCACTCTCGGAGTAAACTGAGTATGTCCAGGTGTGCGCACAGCTATGCATCTGGGTAAGTGTGTGTGTTTTAATGCATGTGCACACACGACTCCACGTACCCTCCTCCTCGGTGGCAACAGTACATCCTTGCCT a score=12602.0 s hg17.chr7_random 423138 68 + 778964 GTGTGTGCATGTGTGTGCATCTGGGCGAGTGTGTGTACATGTCACTCACACACACTTGCACTCACTCC s panTro1.chr6 506255 68 + 161576975 GTGTGTGCATGTGTGTGCATCTGGGCGAGTGTGTGTACATGTCACTCACACACACTTGCACTCACTCC s rn3.chr10 3157268 68 - 110733352 GTGCTTGTGTGTGTGTGCTCTCACATGCTCGTGTGTGCATGCCACACGCACACATTTGCACACACGCC a score=677929.0 s hg17.chr7_random 423206 7463 + 778964 CTCACCCACCATGGCGGCTGTCTCCCCACCCCACCTCTCCCCACGCAGCAGCAGCAGCTGGTGATTCAGCCTCTCCCTCCTGGAGGGCAGCACCCCAGCTCCAGCCTGCCACACACAGGGGCACCAGCCTTGCAGGGCAAAGGCGGAGAAGCCTGAGTTCCTAGGACGGAGGATGAGAAAGAAGCAGAAGGGGGGGTTCCACCATCAAAGCCAACCCCAGGAGAACCCTGCACCCTGCCCCAGCACGCCAGGGGCCAGAGCCCACAGGCAAGgtgggaagggtgtggcctcagaggcatgcctgggtttgcgcccagctccatgactctccctggctgatggtggggaacccacgttctctctccaagcacccgttttctcatttgtaagatgggaatgtaaatatctcatctggccaggcctgcgtgagaattcgatgagataaagtatgcaaagcacCACGTGCCATATCTCGGTGTTCCTGCACTGGGAGGCACTGAGTCCCAAAGCAGGAAGGCACTGACGGTTAGGGCCCCTCCCAACGCAGGAACAGCCGGGGTAGGAAGGGCAGAGGTCACAGCTGGAGGAAGGAGTGGGCAGTTACCCCCTCAGTCCATCACACACTGTCATGCTCACCAAGTAGTGAGCTAGGAGGGCCAGAGGACACTAAAGACCCTCCCTCCCTGCAGAGCTGGGACTTGGGGTTGAAGCTCAAGCCGAGATCTCCTCCTCTGAGCTCACCCAAGACAGGGTCGTGGTGAGAGGCTCTCTGAGGAAGCAGCCGTGGCCCTAAAGCAAGTGCTGAAGAGCGGCCAGCTGCAGGAGGGGTGGGGAGGAAGTTCCAGGTGACAGGACAGTGCTGGCCGGAGCCCGTGGGTGGCCATGGGCTGCAGTGGAGAGGCAAGCAGGAGCCAGACCCCGTGAGGCAGGAAGGAGCTTAGATTTGTTAGGAGAGCACTGGAAAGGTTTGGGAAGGTTTTAAGAAGGGGGAGCAGTTCAATTTGTGTTTCTGGAAGATGGCTCCAGCTGTGACTGATATGGAAAATGGAGCTCGAGGCCCGATGGGAAGCAGAGAGGCTGCTGCAGTCATTCAGCCGAGGGGACAGCGGCGTGGGCGGGGGAAGGGGCGGCAGGGAGAGAAACAGGCATATCTGTGTGCCAGAGGTAGGATCTCTCTTGCATGGAGAATGTGAGAGAAACCCCAGAGGAGAAAGGACAAAATGGGGGTCCCCGAATTCCATGAACTGATACGAGTGTGAggttcaaccccaagtttcgtatgcacagaacacagagaaccacagaaaaggtgctgaggactgagctgcaagcaaaacaatgtccaagtcccagaccagcccccaagcgacccacacaagggtgcgcccaagcagcaccccaaaggcttggaaacggaactcatgttggcatcgtcacccaccaaggatgagagagaacttgcagcatggacctcgtcaattgatttcctgccaaaacaaacaaaaatatcaacattctctctccataggattttaatgggattcaaagcttgacaacataatatagaaaatgtccaggatataatccagttccttgacaaattattcaacatatcaagaactaggaaagtctggccagttctcaaaggaaaagacaacccatggctgacaagcttcagatgctagagatgacgggattatcaggttaacactctaaagcagcaattttaactattttccatgaagtgaaggtgaatactcttggaattggtgggggaatcagcaaagaaatcaaatttatttaaaa--aaaaaaggaagaagaaaggaggagaaggagaacaggaggaggagtaggaagaggaggaactaccaaataaatttagaactgaaaaataaatacaaattttagaactgaaaaataaagtaacagaaaatcttaaattcactagatgggatcatttgcagaatggatatgacagaggaaagaccttgtgagtttgaagagagatcaacagaaatcatcccaccaaaaggacaggtgggcagggcatcgtggctcacgcctgtaatcccagcactttgggaggccgaggtggatggatcacctcaggtcaggagttcgagagcagcctggccaacatggctgaaccccatctctaagtaaaatacaaaaattagctgggcatggtggtgcgcatctgcaatcccagctactcgggaggctgaggcaggagaatctcctgaacccaggaggcagaggttacagtaagccgagatcgcaccactgcactccagcctgggcaagagagcgagactctgaaaaaaagaaaagaaaagaaggaaggaaggagagaaggagggaaggagggagggaaggaaggaaggaaagaaagaaagaaggaaaaaagaaagaaagaaagagaaagaaagaaagaaaaagaaagaaagaaagaaaagaaagagaagaaaagaaaagaaaaagaaagaaagaaagagatttaacagagcctcagggacttgcgggaaaatattttaaaatctaacattcatgtcactggagtccctgaaagacaggaaaaagagattggtacagaaaaatatatttgaagacatgatggttgaaaacttctcaaatatgttgaaaggtataaatattcagattcaagatcaaaggaaaacaagagaaactcaaagaaaatcaaactcagacacattgtactcaaactctgacaaactaaatacacagggaaaatcatgaaagaagccagagaaaagaaacataaagcaaatgagggttcaaaaggctgatttgtcatcagaaaccataaagaacaatgggaagacatctttaaactgctgaaataaaatcactctccactcagaatcctgtatctgtaaacatgtccttgtccttcaggaatgaaggcaaaccagagagattctcagatgaaggaaactgagaatctgtcaccagcaatcctgctctaagaggaatgctaaagcgagttcttcaggctggtgggggaaatgatcacagagggaaagaaaaacacttcaggaaccacggaagagtgacagaaatgggaaatacccaggtacatcttctagactatttgcccctcttaaattactgaaaatacgtgaaagtgttaaaagtaaaaattataacattgtcaagggagtgggggaaagttcaacatgtgtaaagatgatacgtacaacaaccagaaataataaggggaaggtaaatgggcctatgtgatggaaaacttgtatgttttacttgaaatggtaaaatatcaactctaaaaagtctgtgtaaagttatgtatgtatattataatgcctatagcaatcacttaaagaaaaacagtaaaaaagacagtaagtactaaaaaataatcaaataatctaaaagaaggaaggaaaaaagaaacataggaaaaaaaacagagaaaacaaatagaaaaataattaaatggtagacctaaatccaaccatatcaataattacattaaatgtacatgatctatacatgaggtaagatatataaaAGTAACCatcttaaaaaataatggttgaaaacttgccaaatttcttgaaggacataaattaacatcaagatttgcaaagggaaaccagacaaactcaaagaaaatcatattaagatgcatcatagg-ctgggcgtgg-ggctcacacctgtaatctcagcactttgggaggccgaggcaggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctactaaaaatacaaaaaatttgccgggtgtggtggcaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacccaggaggcggagctcgcagtgagcggagattgtgccactgcactccagcctgggcaaacggggcaagactccgtctcaaaaaaataagtaaataaataaatacataaataaataaataaaGATGCATCATAATATATACTATACTATATATACTATATGTACTACATATATAGTAATAAAcagtattttctttttaaaaagtggataatctaaacacaccaattaaaagacagaaactgtcaaatcatataaaaaaagaaaaccaagtatatgctatctataagacacacactttactgatatagctaaaataagaggatagaaaaagattaatcacacaaatcctaataatgtggctgtattaatatcagataaagcagacttcagaacaatgaaaattaccaggaacaaagagaaacatcgaataatgataagagggtttattcacatgaaaacatagcaatcccaaatgtatatgcaactaataacagagctccaaaacacataaagcaaaaactgatagaattaaaggagacacagacaaattataattggaagtttcaatgctgttctttggtagtaggtatagcaaggggccaaaaagaatcagcaagaatgggccaggtgcagtggctcatgcctgtaatcccaccactttgggaggttgaggtgggtggatcacgaggtcaagagatcgagaccatcgatctcctgtggctaacacagtgaaaccccatctctactaaaaacacacaaaaaattagctgggcgtggtggcagacgcctgtagtcccagctacttgggaggctgaggcaggagaatggcacgaacccgggaggtggagcttggagtgagccgagatcacgtcactgcactccagcctgggcaacagagcaagactctgtctcaaaaaaaaaaaaaaaaatcagcaggaatgcaaaagaccctaacctgaacaacccctcaaacaaccagacctaaccaacatttccagaacacagcacccaacagcagcacacagtgtttctaagggcacgtgtgatattcaccaagataaagcatatgatcagccataaaccacaccttaacaaaataaagattcaaaaccatataagctatgttccctgaccataatgaaattaaactagaaataaataacagagagatatc-aaaaaaatccccaaatatttggaaattagacaacaaatttctaaataagatgaaccaaagaggaaatctcaaggtaaaatggaaaatattttgagctaaatagaaaatgaaaatacagcacatcaaaatctgtgaaatatagttagaacagtgctttagagaaaaatctgtagcattatatatttctatcagataaaaagccttaatcatctaaaatttcaccttaagaaattttatgaagaacagataaaacccaaagactgaagaagaaatgaaataataaaaataagaggagaaacagataaaatctaaacaaaaatagacaaaatcgatgaaattaaaatctaactctttgaaaagatcagtaaaattgataaacttctagccagactgatcaagcaaaaaagaaaagccagaaattaccgtctcaggaatgaaaaccatctcagaaaaccacctcaggaatgaaataatacaaacactacagacattaaaaggatgaggtaatattactctatattgataaatgtaacaacttaaatgaaacggaacaatgccttgaaatacacaaactATggccgggtgcggtggctcacgcctgtaatcccagcgctttgggaggccgaggcgggtggatcacttgaggtcaggagttcgagagcagcctgtccaacatggtgaaatcccgtccccaccaaaaatacaaaaatgagccaggcgcgatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacccaggaggggcgggttgcagtgagctaagatcgcaccactgcactccagcctggtcaacaaagcaagactctgtctcggagtaaataaataaataaacaagccacatactagaagaaaatattttgtaaattaaatatctgacagtttataaaaaattctgaaactcagtagtaagaaaacagacaacctaataagaaaaatggacaaaatacatgaacagacacttcaccaaagaagatatttgagtggaaaataagcgtatgaaaacatcctcaacaactttagtcatcaggaaatgtaaaataaaaccactttagggccgggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcgggtggagcatctgaggtcaggagttcaagaccaacctggccaacatggtgaaaccccatctctactaaaaatacaaaaactagctaggcatggtggcacatgcctgtaatcctagctatccgggaggctgaggcaggaaaatcgcttgaaaatcacctgaacgcggggagcagaggctgcagtaaaccgagatcacgccattgccctccagcctgggtgacagagcaagactctgtctcaattaaaaaaaaaaaaaagaaaaaagaaaaaaaaaaacattttaggtgccaccatatacctattagaatggctaaacgttttttaaaactgacagtatcaaaggctgccgatactgaggaacaagaatcacggctgcttggaacacgagataggacagacattctggaaaacagtttggcagtttcttataaacatacacttaccctatgacccaggaatctcactactaaatatttactcaagtgaaataaaaacctacttccacattaaaaacctgtaagacgaatatttatagcagctttatttgtagttggcaaaaactggaaaggatccaagtgttcctagacagggtacaggacagacaagctgcaatccatctatgcaacagaacactgccggcaataaaaatgcaggacctgttgatgcagaaaaacacagatgaGGcgggcactgtggctcacgtctctaatcccaacacactgggaggccgaggcaggtggatcacctgaggtcaggagttcaagaccacactgaccaacgtgctgaaaccccgtctctactgaaaatataaaattagccgggcgtggtggcaggcgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagctgagactgtgccactgctctccagcctgggcaacaagagtaaaactctgtctcgaaaagaaaaaCAGATGagccgggcgtggtggctcacatctataaccccagcactttgggaagccgagtggggaggaccgcttgagctcaggagttcaagaccagcctgggcaacatggcgaaatcccgtctccacaaaaaatacaaaaattagccaggcatggtggtgggcaccggtactcccagctactcaggaagctgaggtgggaagatggcttgagcctgagaggtggaggttgcagtgagctgaaatcataccactgtactctagcctggacaacagagccagaccctgtctcaaa s panTro1.chr6 506323 7382 + 161576975 CTCACCCACCATGGCGGCTGTCCCCCCACCCCACCTCTCCCCACGCAGCAGCAGCAGCTGGTGATTTAGCCTCTCCCTCCTGGAGGGCAGCACCCCAGCTCCAGCCTGCCACACACAGGGGCACCAGCCTTGCAGGGCAAAGGCGGAGAAGCCTGAGTTCCTAGGACGGAGGATGAGAAAGAAGCAGAAGGGGGGGTTCCACCATCAAAGCCAACCCCAGGAGAACCCTGCACCCTGCCCCAGCACGCCAGGGGCCAGGGCCCACAggcaaggcgggaagggtgtggcctcagaggcatgcctggatttgcgcccagctccatgactctccctggctgatggtggggaacccgcgttctctctccaagcacccgttttctcatttgtaagatgggaatgtaaatatctcatctggccaggcctgcgtgagaattcaatgagataaagtatgcaaagcaccacgtgccATATCTCGGTGTTCCTGCACTGGGAGGCACTGAGTCCCAAAGCAGGAAGGCACTGACGGTTAGGGCCCCTCCCAACGCAGGAACACCCGGGGTAGGAAGGGCAGAGGTCACAGCTGGAGGAAGGAGTGGGCAGTTACCCCCTCAGTCCATCACACACTGTCATGCTCACCAAGTAGTGAGCTGGGAGGGCCAGAGGACACTAAAGACCCTCCCTCCCTGCAGAGCTGGGACTTGGGGTTGGAGCTCAAGCCGAGATCTCCTCCTCTGAGCTCACCCAAGACAGGGTCGTGGTGAGAGGCTCTCTGAGGAAGCAGCAATGGCCCTAAAGCAAGTGCTGAAGAGCGGCCAGCTGCAGGAGGGGTGGGGAGGAAGTTCCAGGTGACAGGACAGTGCTGGCCGGAGCCCATGGGTGGCCACAGGCTGCAGTGGAGAGGCAAGCAGGAGCCAGACCCCGTGAGGCAGGAAGGAGCTTAGATTTGTTAGGAGAGCACTGGAAAGGTTTGGGAAGGTTTTAAGAAGGGGGAGCAGTTCAATTTGTGTTTCTGGAAGATGGCTCCAGCTGTGACTGATATGGAAAATGGAGCTCGAGGCCCGACGGGAAGCAGAGAGGCTGCTGCAGTCATTCAGCCGAGGGGACAGCGGCGTGGGCAGGGGAAGGGGCGGCAGGGAGAGAAACAGGCATATCTGTGTGCCAGAGGTAGGATCTCTCTTGCATGGAGAATGTGAGAGAAACCCCAGAGGGGAAAGGACAAAATGGGGGTCCCCGAATTCCATGAACTGATACGAGTGTGAggttcaaccccaagtttcatatgcacagaacacagagaaccacagaaaaggtgctgaggactgagctgcaagcaaaacaatgtccaagtcccagaccagcccccaagcgacccacacaagggtgcacagaagcagcacccgaaaggcttggaaacggaactcatgttggcatcgtcacccaccaaggatgagagagaacttgcagcatggacctcgtcaattgatttcctgctaaaacaaacaaaaatatcaacattctctctccataggatttcaatgggattcaaagcttgacaacataatatagaaaatgtccaggatataatccagttccttgacaaattattcaacatatcaagaactaggaaagtctggccagttctcaaaggaaaagacaatctgtggctgacaagcttcagatgctagagatgacgggattatcaggttaacactctaaagcagcaattttaactattttccatgaagtgaaggtgaatactcttggaattggtgggggaatcagcaaagaaatcaaatttatttaaaaagaaaaaaggaagaagaaaggaggagaaggagaac------------------aggaggaactaccaaataaatttagaaccgaaaaataaatacaaattttagaactgaaaaataaagtaacagaaaattttaaattcactagatgggatcatttgcagaatggatatgacagaggaaagaccttgtgagtttgaagagagatcaacagaaatcatccCACCAAAAGGACGGGTGggcagggcatcgtggctcacgcctgtaatcccagcactttgggaagccgaggtggatggatcacctcaggtcaggagttcgagagcagcctggccaacatggctgaaccccatctctaagcaaaatacaaaaattagccgggcatggtggtgcgcgtctgcaatcccagctactcgggaggcggaggcaggagaatcgcctgaacccaggaggcagaggttacagtaagccgagatcgcaccactgcactccagcctgggcgagagagcgagactctgaaaaaaagaaaagaaaagaagaagggaaggagagaaggagggaaggagggaaggaaggaaggaaggaaagaaagaaagaaggaaaaaagaaagaa--------aaagaaagaaaga-------------aaagaaaagaa-----------------------aaagaaagaaagagatttaacagagcctcagggacttgtgggaaaatattttaaaatctaacatttatgtcactggagtccctgaaagacaggaaaaagagattggtacagaaaaatatatttgaagacatgatggttgaaaacttctcaaatatgttgaaaggtataaatattcagattcaagatcaaaggaaaacaagagaaactcaaagaaaatcaaactcagacacattgtactcaaactctgacaaactaaatacacagggaaaatcatgaaagaagccagagaaaagaaacataaagcaaatgagggttcaaaaggctgatttgtcatcagaaaccataaagaacaatgggaagacatctttaaactgctgaaataaaatcactccccactcagaatcctgtatctgtaaacatgtccttgtccttcaggaatgaaggcaaaccagggagattctcagatgaaggaaactgagaatctgtcaccagcaatcctgctctaagaggaatgctaaagcgagttcttcaggctggtgggggaaatgatcacagagggaaagaaaaacacttcaggaaccacggaagagtgacagaaatgggaaatacccaggtacatcttctagactatttgcccctcttaaattactgaaaatacgtgaaagtcttaaaagtaaaaattataacattgtcaagggagtgggggaaggttcaacatgtgtaaagatgatacgtacaacaaccagaaataataaggggaaggtaaatgggcctacatgatggaaaacttgtatgttttacttgaaatggtaaaatatcaactctaaaaagtctgtgtaaagttatgtatgtatattataatgcctatagcaatcacttaaagaaaaacagtaaaaaagacagtaagtactaaaaaataatcaaataatctaaaagaaggaaggaaaaaagaaacatagggaaaaaaacagagaaaacaaatagaaaaataattaaatggtagacctaaatccaaccatatcaataattacattaaatgtacatgatctataaatgaggtaagatatataaaagtaaccatcttaaaaaataatggttgaaaacttgccaaatttcttgaaggacataaattaacatcaagatttgcaaagggaaaccagacaaactcaaagaaaatcgtattaagatgcatcataggcccgggcgtggtggctcacgcctgtaatctcagcactttgggaggccgaggtgagcggatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccatctctcctaaaaatacaaaaaatttgccgggtgtggtggcaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagcggagatcgcaccactgcactccagcctgggtaaacggggcaagactccatctcaaaaaaataag----------------taaataaataaataaagatgcatcataatatatactatactatatatactatatgtactacatatatagt----aacagtattttctttttaaaaagtgaataatctaaacacaccaattaaaagacagaaactgtcaactcatataaaaaaagaaaaccaagtata-gctatctataagacacacactttactgatatagctaaaataagaggatagaaaaagattaatcacacaaatcctaataatgtggctgtattaatatcagataaagcagacttcagaacaatgaaaattaccaggaacaaagagaaacatcaaataatgataagagggtttattcacatgaaaacatagcaatcccaaatgtatatgcaactaataacagagctccaaaacacataaagcaaaaactgatagaattaaaggagacacagacaaattataattggaagtttcaatgctgttctttggtagtaggtatagcaaggggccaaaaaaattcagcaagaatgggccaggtgcagtggctcatgcctgtaatcccaccactttgggaggttgaggtgggtggatcacaaggtcaagagatcgagactatcaacctcctgtggctaacacagtgaaaccccatctctactaaaaacacaaaaaaaattagctgggcgtggtggcagacgcctgtagtcccagctacttgggaggctgaggcaggagaatggcacgaacccgggaggtggagcttggagtgagccgagatcacgtcactgcactccagcctgggtgacagagcaagactctgtctcaaaaaaaaaaaaaaaaatcagcaggaatgcaaaagaccctaacctgaacaacccctcagacaaccagacctcaccaacatttccagaacacaacacccaacagcagcacacagtgtttctaagggcacgtgtgacattcaccgagataaagcatatgatcagccataaaccacaccttaacaaaataaagattcaaaaccatacaagctatgttccctgaccataatgaaattaaactagaaataaataacagagagatatcaaaaaaaatccccaaatatttggaaattagacaacaaatttctaaataagatgaaccaaagaggaaatctcaaggtaaaacggaaaatattttgagctaaatagaaaatgaaaatacagcacatcaaaatctgtgaaatatagttagaacagtgctttagagaaaaatctgtagcattatatatttctatcagataaaaagccttaatcatctaaaatttcaccttaagaaattttatgaagaacagataaaacccaaagactgaagaagaaatgaaataataaaaataagaggagaaacagataaaatctaaacaaaaatagacaaaatcgatgaaattaaaatctaactctttgaaaagatcagtaaaattgataaacttctagccagactgatcaagtaaaaaagaaaagccagaaattaccgtctcaggaatgaaaaccatctcagaaaaccacctcaggaatgaaataatatgaacactacagacattaaaaggatgaggtaatattactctatattgataaatttaacaacttaaatgaaacggaacaatgccttgaaatacacaaactATggccaggtgcggtggctcatgcctgtaatcccagcgctttgggaggccaaggcgggtggatcacttgaggtcaggagttcgagagcagcctgtccaacatggtgaaatcccgtccccaccaaaaatacaaaaatgagccaggcgcgatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacccaggaggggcgggttgcagtgagctaagatcgcaccactgcactccagcctggtcaacaaagcaagactctgtctcagagtaaataaataaataaacaagccacatactagaagaaaatattttgtaaattaaatatctgacagtttataaaaaattctgaaactcagtagtaagaaaacagacaacctaataagaaaaatggacaaaacacatgaacagacacttcaccaaagaagatatttgagtggaaaataagcgtatgaaaacatcctcaacaactttagtcatcaggaaatgtaaaataaaaccactttagggccgggcgcagcggctcactcctgtaatcccagcactttgggaggctgaggcgggtggagcacctgaggtcaggagttcaagaccaacctggccaacatggtgaaaccccatctctactaaaaatacaaaaactagccaggcatggtggcacatgcctgtaatcctagctctccgggaggctgaggcaggaaaatcgcttgaaaatcacctgaacgcggggagcagaggctgcagtaaaccgagatcacgccattgccctccagcctgggtgacagagcaagactctgtctcaatt---aaaaaaaaaaagaaaaaagaaaaaaaaaaacattttaggtgccaccatatacctattagaatggctaaacgttttttaaaactgacagtatcaaaggctgccaatactgaggaacaagaatcacggctgcttggaacacgagataggacagacattctggaaaacagtttggcagtttcttataaacatacacttaccctatgacccaggaatctcactactaaatatttactcaagtgaaataaaaacctacttccacattaaaaacctgtaagacgaatatttatagcagctttatttgtagttggcaaaaactggaaaggatccaagtgttcctagacagggtacaggacagacaagctgcaatccatctatgcaacagaacactgccggcaataaaaatgcaggacctgttgatgcagaaaaacacagatgaGGcgggcactgtggctcacgtctctaatcccaacacactgggaggccgaggcaggtggatcacctgaggtcaggagttcaagaccacactgaccaacgtgctgaaaccccgtctctactgaaaatataaaattagccgggcgtggtggcaggcgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagctgagactgtgccactgctctccagcctgggcaacaagagtaaaactctgtctcgaaaagaaaaaCAGATGagccgggcatggtggctcacatctataaccccagcactttgggaagccgagtggggaggaccgcttgagctcaggagttcaagaccagcctgggcaacatggcgaaatcccgtctccacaaaaaatacgaaaattagccaggcatggtggtgggcaccggtactcccagctactcaggaggctgaggtgggaagatggcttgagcctgagaggtggaggttgcagtgagctgaaatcataccactgtactgtagcctggacaacagagccagaccctgtctcaaa a score=1437.0 s hg17.chr7_random 430965 54 + 778964 CCGTTCCCTGGGGTCTCACTCTGCCTTAGCGGCCAGAGAGGGTGGCCAGGTGGG s canFam1.chrUn 1895835 52 + 91062872 CCATTCTGCAGGGTCTATATCCACCTCAG-AGCCAGAAGAGGTGGCCAGA-GAC a score=44034.0 s hg17.chr7_random 431019 299 + 778964 CCCAGCCCCGCTTCCCCAGG---------------TGACTCCCAGCGCTTAGGCGCACCAGCTTCACCCCGATGCC-CAGTGGGAAATCGGAA--CCCTCCTAAATTCTTTCCCACCTTTCTTGGGGATCCA-GAGGTCACGGAGGCCTAGGAGGAGCCTCTTGGTGACGGTCCTAACCCACAAGCCCAGCCCTGCAGGAAAGGGAATCAACCTCATCCTCCTACCG--------CACACCGTTGCCCCATCCTGCCAGGGTGGCGGCGGCAGAAACTCCATCT---------------------TCCCTCCCCAGAG-GCTCCAAATGCCAGGAGAGGGG-TAGGCAG s panTro1.chr6 520202 299 + 161576975 CCCAGCCCCGCTTCCCCAAG---------------TGACTCCCAGCGCTTAGGCGCACCAGCTTCACCTCGATGCC-CAGTGGGAAATCGGAA--CCCTCCTAAATTCTTTCCCACCTTTCTTGGGGATCCC-GAGGTCACGGAGGCCTAGGAGGAGCCTCTTGGTGACGGTCCTAACCCACAAGCCCAGCCCTGCAGGAAAGGGAATCAACCTCATCCTCCTACCG--------CACACCGTTGCCCCATCCTGCCAGGGTGGCGGCGGCAGAAACTCCATCT---------------------TCCCTCCCCAGAG-GCTCCAAATGCCAGGAGAGGGG-TAGGCAG s canFam1.chrUn 1895887 336 + 91062872 CCCAGACCA----CTCTAGGGAGAGGTGAGCTGATTGCCTTTTCTTGGTTAATGGCACCAGCTTCACCCCGATGCCTCAGTGGGAAATCAACAGGTCATCCTGAATTCTTCCCCACTATCTTCCAAAGTCCATGAGGTCGCTGAGGT----GTGCAGACCCTGGGTGAC-TTCCTAATCTATTAGCCCAGACCCGCAGGAAGGGGGACTGTGCTTATGTTCCTGTTGCCCAACATCACACTTTGCCCCCATTCTAGCA----GGTGGTGGCAGAAACTTCATCTCAATCATTTGGGGCCCCCCGCCCTTTCCACAGAGTGGTCCAAGCACCAGGAGAGGGGACAGGGAG a score=1674.0 s hg17.chr7_random 431318 37 + 778964 TTCCAGCT------GTGAAGGAGATGATACCTG-------------CCTCCCTGTG s panTro1.chr6 520501 37 + 161576975 TTCCAGCT------GTGAAGGAGATGATACCTG-------------CCTCCCTGTG s canFam1.chrUn 1896223 56 + 91062872 CCCAAGTCTTGAAGGGGAAGGAGAAGAGATCTGCTCACGTCTCACACCCTCTCATT s fr1.chrUn 117199088 37 + 349519338 TCTTAGTA------GTGAGGAAAACTCCCTCTG-----------TACCTGTCTG-- a score=8177.0 s hg17.chr7_random 431355 44 + 778964 CACACTCACCTGTCTACCCCCGGGGTCCTCCACCCACCTGCCCA s panTro1.chr6 520538 44 + 161576975 CACACTCACCTGTCTACCCCCGGGGTCCTCCACCCAACTGCCCA s canFam1.chrUn 1896279 30 + 91062872 CACACTCACCTGT--------------CCCTGCTCACCTGTCCA s fr1.chrUn 117199125 30 + 349519338 -ACCCTCACCTGTCTGAC---------CCCCACCTGTCTG---- s danRer1.chrUn 231975873 44 + 367113659 CAAAGTCACTGACCCACTTTCGCTAGCCCATGTTCACTAGCCCA a score=51985.0 s hg17.chr7_random 431399 447 + 778964 -GCCCCCGGATCCTCCACCCGCCTGTCCAGCCCCCGGGTCCTGCA-CTCACCTGCCCGGCTTCCCTGTTGCCTA---CTCACCTGTCTCCCACTATGCTGCCCCATCTTCACCTGTCTCC---CACTCACCCGTACACACCATCTCCCACTCACCCGTCTCTTGCTCAC-------------CTTTTCCACACTCACCTGTACACAGACACCATCTCCCACTCAGCCCTCCCATGCTCACCTGGTCCACACTCACGTATACACACTCACCGTCTCCCAGTCA--GCCCT-----------CCCATGCTCAC-------------CTGGTCCACACTCACCTGTACA--CACTCACC-GTCTCTCACTCAGCCCTCCCA-TGCTCACCTGGTCCACACTCACCTGTCCAGCTTTCTTGTTCATTGCTCAGCTGTCTCCCACTCACCTGCCTGCACAGGCAC---------TACACAGGTCACCAGCC-CTGCCGAGCACATTCCCCAGC s panTro1.chr6 520582 447 + 161576975 -GCCCCCGGATCCTCCACCCGCCTGTCCAGCCCCCGGGTCCTCCA-CTCACCTGCCCGGCTTCCCTGTTGCCTA---CTCACCTGTCTCCCACTATGCTGCCCCATCTTCACCTGTCTCC---CACTCACCCGTACACACCATCTCCCACTCACCCGTCTCTTGCTCAC-------------CTTTTCCACACTCACCTGTACACAGACACCATCTCCCACTCAGCCCTCCCATGCTCACCTGGTCCACACTCACGTATACACACTCACCGTCTCCCAGTCA--GCCCT-----------CCCATGCTCAC-------------CTGGTCCACACTCACCTGTACA--CACTCACC-ATCTCTCACTCAGCCCTCCCA-TGCTCACCTGGTCCACACTCACCTGTCCAGCTTTCTTGTTCATTGCTCAGCTGTCTCCCACTCACCTGCCTGCACAGACAC---------TACACAGGTCACCAGCC-CTGCCGAGCACACTCCCCAGC s fr1.chrUn 117199155 383 + 349519338 ----------ACCCTCACCTGTCTGACCCTCACCC--GTCTGACACCTCACATGTCTGACCCCTCACCTGTCTGACCCTCACCTGTCTGACCCCCACCTGTCTGACCCCCACCTGTCTGA---CCCTCACCTGT--------CTGACCCCTCACCTGTCTGACCCTCAC-------------CTGTCTGACCCCCACCTGT---CTGACCCC-------------------------CACCTGTCTGACCCTCACCTGT-----CTGACCCCTCACCTGTCT--GACC------------------CTCAC-------------CTGTCTGACCCTCACCTGTCTGACCCCTCACCTGTCTGACCCTCACCCGTCTGACCCCTCACCTGTCTGACCCTCACCTGTCTGACC-------------CCCACCTGTCTGACCCTCACCTGTCTGACCCCTCAC---------CTGTCTGACCCTCACCT-GTACTCCGCCCATACACAACC s danRer1.chrUn 231975917 487 + 367113659 AATTTACTG-ACCCACATTCACTAGTCCACGTTCACTAGCCTGCA-TTCACTAGCCCGGATTCACTGGCCCTCA---TTCACATG-CTCGCATTCA-CTGGCCCAAATTTACTGGCCCACATTCACTGGCCCACATTCACTGGCCCACATTCA-CTGGCCCACATTCACTGACCCACATTCACTGGCCCACATTCACTGGCCCACAGTCACTGACCCACATTCA-CTAGCCCACATTCA-CTGGCCCACATTCACTGACCCACATTCACTGGCCCACATTCACTGACCCACATTCACTGGCCCACATTCACTGACCCACATTAACTGGTCCACATTCACTGGTCCA--CATTCACT-GGCCCACATTCA-CTGGCCCA-CATTCA-CTGACCCACATTCACTAGCCCACATTCACTGGCCCACATTCA-CTGACCCACATTCACTGGCC--CACATTCACTGACCCACATTCACTGGCCCACATTCACTGACC--CACATTCACTAGC a score=6672.0 s hg17.chr7_random 431846 69 + 778964 A--------GGGCTGACATTG--CCTCA-GCCTCTTCCTGCCAGGGTGAACGTAAACCAAGCAGGCCACCCTCGGGGGTC s panTro1.chr6 521029 69 + 161576975 A--------GGGCTGACATTG--CCTCA-GCCTCTTCCTGCCAGGGTGAACGTAAACCAAGCAGGCCACCCTCGGGGGTC s fr1.chrUn 117199538 71 + 349519338 ATACAGATGAGGTTAAAATTGCACCTCATGCATCTT----CAAAGATACTCAGAATCAAAGCAG-----CCTCGAGTCTC a score=141487.0 s hg17.chr7_random 431915 1529 + 778964 AAACACGAAGGTCCTTGGTCCTCAGCCCTCACCCTCAGCACCCACTGGCCCCAGCCCCGTCTCAGGCAGACCTGCATTTGTCCTGAGACTTTCTTAGGGATCCAGGCCTGGTCTCTGAATTAGAACTCCATCCCACAACCCACTCAGACCTCTGGCTCTCCCAGCCCTGGCCTGCCTGGAGCTGCTGCTGACCAGCAGTACCATCACGTGCTCCCCGCGGcccctccactccctcctcctcctcctcc------aattactcctgctcctccAGGGTAGACTGGTGAGGACAGCAAAAAAGACCCAGGTGCCACCTAACCAAGGCGACGTCTCGCTTCGGGGGGCAGATGCTCCAGGCCTGGCTGCTTCTCTCCCGGGCTGTCCTGGGGTTCTCTGGAGACTCCCTGTAAAGACTTCCCCCACACCGTGCCTCTAGAGGAGAGTGGAGGCACCTCTCTGGCTGACCTCACAGGACAGCCCTCTGATCCCGAGGCGCACACACAAGCCCTCCTTCTGCTGCAATACCTCCTCAGGCTGAGCCTCCTTGCCTGCGTCCTTTTGAGACAAGGATCTCCCAGGTTTGGGGGCTGGCAGCATGCACGTGGCCAGCCAGACATGCGGCCCCTGGCCCCACTGAGCTGTGACGTCTGCTGAGCTCCTCTCCTCATTGCCACGACGGCAGCTCCCACTGCCTCTCTCTTTCACACTTTTCCCCGCCACTCAGATCCCTGTTCCAGTGGCCCCCACCCCACACAAGGACTCCCTCTCCAGACTGGCTCTGGTAGGAGTGCGAGGCGTGGCCCCCACCGCCCCAACCTGCAGACAAGTTTCTGCCTGACTCCCAGGCCTCTCTTGCTTCAGCCTTACTGGCTTGAGCCAAGGACAGACGCTTCCTTAGTGTCCTGCTCACTGTCTGATCATTGCCAGAGGATGAAATCAACACAGAAGTGGGAAGAAACAGGATCCTAGAGAAATGGAGCCACGGCCGTCCTCAAACCAAACCTGAGGCCCTTCCCGTATCTGGACTTCCCAATTATGTTCATCAATAAATACCTTTggccggatgcggtggttcacacctgtaatcccagcactttgggaggccgaggcaggtgggtcactggaggtcaggagttcaagaccagcctgggcaacatagcgaaaccctgtctcgactagaaatacaaaattagccgggcatggtcatgcacgcctgtaatccccagctactcagaaagctgaagcaggagaatcacttgaactccagtgagcccagatcgtaccactgcactccagcctgggcagcaaaagagcgaacgaaactccgtctcgaaataaataaataataaataaaTACCTCGTACTACTGCCTGAGCCCGTTGGCTTTTTGCTTTTTGTTAGTCGCCACTGAGGACATCCAAGTGAATACACCACTGATCTGACACAATCCCCCCAAAACACACACTGACAACCCCATTAAATGCTCCTGGATGAAGACACAAAGAGGGGTCTGGTGAGCTCAGAGGAGCTGCGCT s panTro1.chr6 521098 1535 + 161576975 AAACACGAAGGTCCTTGGTCCTCAGCCCTCACCCTCAGCACCCACTGGCCCCAGCCCCATCTCAGGCAGACCTGCATTTGTCCTGAGACTTTCTTAGGGACCCAGGCCTGGTCTCTGAATCAGAACTCCATCCCACAACCCACTCAGACCTCTGGCTCTCCCAGCCCTGGCCTGCCTGGAGCTGCTGCTGACCAGCAGTACCATCACGTGCTCTACGTGGCCcctccactccctcctcctcctcctcctccAGACGTTACTCCTGCTCCTCCAGGGTAGACTGGTGAGGACAGCAAAAAAGACCCAGGTGCCACCTAACCAAGGCGACGTCTCGCTTTGGGGGGCAGATGCTCCAGGCCTGGCTGCTTCTCTCCCGGGCTGTCCTGGGGTTCTCTGGAGACTCCCCATAAAGACTTCCCCCACACCGTGCCTCTAGAGGAGAGTGGAGGCACCTCTCTGGCTGACCTCACAGGACAGCCCTCTGATCCCGAGGCGCACACACAAGCCCTCCTTCTGCTGCAATACCTCCTCAGGCTGAGCCTCCTTGCCTGCGTCCTTCTGAGACAAGGATCTCCCAGGTTTGGGGGCTGGCAGCATGCACGTGGCCCGCCAGACATGCGGCCCCTGGCCCCACTGAGCTGTGACGTCTGCTGAGCTCCTCTCCTCATTGCCACGACGGCAGCTCCCACTGCCTCTCTCTTTCACACTTTTCCCCGCCACTCAGATCCCTGTTCCAGTGGCCCCCACCCCCCACAAGGACTCCCTCTCCAGACTGGCTCTGGTAGGAGTGCGAGGCGTGGCCCCCACCGCCCCAACCTGCAGACAAGTTTCTGCCTGACTCCCAGGCCTCTCTTGCTTCAGCCTTACTGGCTTGAGCCAAGGACAGACGCTTCCTTAGTGTCCTGCTCACTGTCTGATCATtgccagaggatgaaatcaacacagaagtgggaagaaacaggatcctagagaaacggagccacggccatcctcaaaccaaacctgaggcccttcccgtatctggacttcccaattatgttcatcaataaatacctttggccggatgtggtgtttcacacctgtaatcccagcactttgggaggccgaggcaggtggatcactggaggtcaggagttcaagaccagcctgggcaacacagcgaaaccctgtctcaactagaaatacaaaattagccgggcatggtcgtgcacgcctgtaatccccagctactcagaaagctgaagcaggagaatcacttgaactccagtgagccgagatcgtaccactgcactccagcctgggcagcgaaagagcgaacgaaactccgtctcaaaataaataaataataaataaaTACCTCCTAGTACTGCCTGAGCCTGTTAGCTTTTTGCTTTTTGTTAGTCGCCACTGAGGACATCCAAGTGAATACACCACTGATCTGACACAATCCCCCCAAAACACACACTGACAACCCCATTAAATGCTCCTGGATGAAGACACAGAGAGGGGTCTGGTGAACTCAGAGCAGCTGCGCT a score=39977.0 s hg17.chr7_random 433444 324 + 778964 TGGTCATCGGACCACGTG------------GACCTCAACAGGTCGGTCGCCACCCTGCCACACGGTGACAAACCCTGACGTGTGACACTGTGCCCAAGCAGCTATG-CCCTCAACTGAAAATGTGCTGCTGGTGACTGGGTTACCCATTCAGAAG----TCCCAGTAAATCACATATCTTCCCATAGGGAAGGA----CCTACCCCCTGGGGTAGGTTATTTTTCTCAGCAAAGGTATTCACATTTCTAAGCCCTGTGGGGTCTTACTTCACCCATAGAATGTGCCTGTAGGATTCATCATGACTAAATGTACTTACAGTGACCACGCTTTGCAGAACTCCAACC s panTro1.chr6 522633 324 + 161576975 TGGTCATCGGAGCACGTG------------GACCTCAACAGGTCGGTCGCCACCCTGCCACGCGGTGACAAACCCTGACGTGTGACAGTGTGCCCAAGCAGCTATG-CCCTCAACTGAAAATGTGCTGCTGGTGACTGGGTTACCCATTCAGAAG----TCCCAGTAAATCACGTATCTCCCCATAGGGAAGGA----CCTACCCCCTGGGGTAGGTTATTTTTCTCAGCAAAGGTATTCACATTTCTAAGCCCTGTGGGGTCTTACTTCACCCATAGAATGTGCCTGTAGGATTCATCATGACTAAATGTACTTACAGTGACCACGCTTTGCAGAACTCCAACC s canFam1.chrUn 1896563 307 + 91062872 TGGTTGTGACACCATGTGTGCCATAGTGCTGGCATTCACAGCTAGGTTGCCTCCCCCCTGGATAGTGAGAAATCCTGGCTTTTG-TACAGTGTCCAAGCAGCCATATCCTTCCACTAAAAACATACAACTGA-AATCCAGTTACCCAGTACATTGTGCTTACCTGAAAATGTCCCCTCTGCCCACAGGGAAGGACCACCCTATGTCCTCAGCCCTCTGACATTCCCCAGCAGAAG---ATACATTCCCCAGCTCTGGGGGACTCTGTTTCACCCCTAGAACTTG---------------------------------GGTGACCAAGCCTCATAAAGACCCAACT a score=56427.0 s hg17.chr7_random 433768 650 + 778964 AAAGAGCCACA---ttttattttttttttttgagacagagtctcattctgtcacccaggctgcagtgcagtggcgtgatctctgctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccgcgcccggctaattttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcggtctcctgacctcgtgatccgcccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgcacccggccTAGCCACATTCTTTATA--TAtttttttttttaaatctttttgttgttgttttgagacagggtctcactctgtcgcccaggctggagtgcagtggtgtgatcatagctcactgcagcctcaaattcctgggctcaagccatcctcccacttcaacatccagagtagttgggatcacaggtgcacaccgccacacctggtacttaaaaacattttttttttttttgt-----aaaaaaaaaaaatctcactatgttgcctaggctagtctcgaattcctggcctccaacaatcctcccaccagcttcccagagtgctgggactacaggtatgagccaccgcacccggtc s panTro1.chr6 522957 648 + 161576975 AAAGAGCCACAttttttttttttttttttttgagacagagtctcattctgtcacccaggctgcagtgcagtggcgcgatctctgctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacag------------gcgcccggctaattttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcggtctcctgacctcgtgatccgcccgccttggcctcccagagtgctgggattacaggcgtgagccaccacgcccggccAAGCCACATTCTTTATGCTttttttttttttttaatctttttgttgttgttttgagacagggtctcactctgtcgcccaggctggagtgcagtggtgtgatcatagctcactgcagcctcaaattcccgggctcaagccatcctcccacttcaacatccagagtagttgggatcacaggtgcacaccgccacacctggtacttaaaaacatttttttttttttggtaaaaaaaaaaaaaaaaatctcactatgttgcctaggctagtctcgaactcctggcctccaacaatcctcccaccagcttcccagagggctgggactacaggtatgagccaccgcacccggcc a score=20172.0 s hg17.chr7_random 434418 218 + 778964 CGAAGCCACATTCTTTTCCCAATCACCACATA-CCTCGCACTTCTAAACTTTGCTCTGTCAGCTCCAATTCACCCTCCAAGATTCAACCAAAACGTTACACAGGGAAA-TTCCCTAAGGCGCCAGCACTGCCTCTGGA-------GGGCCC---------GGGGCTCCCAGGACTTC--TCCTTGGTAGCTCTTATTACACGTGCAATTGAAT-AATGACGGCAAGGCTGCCAGCTTAA s panTro1.chr6 523605 219 + 161576975 CAAAACCACATTCTTTTCCCAAACACCACATA-CCTCGGACTTCAAAAATTTGCTCTGTCAGCTCCAATTCACCCTCCAAAATTCAACCAAAACGTTACACAGGGAAA-TTCCCTAAGGCGCCCCCACTGCCTCCGGA-------GGGCCC---------GGGGCCCCCAGGACTTC--TCCTTGGTAGCCCCCATTACACGATCAATTGAATAAATGATGGGAAGGTCGCCCGTTTAA s canFam1.chrUn 1896871 206 + 91062872 CAAAGCCATGTTC-TTTCCCAATCACTGCCTGCCCCCACACTCC------TGCCTCTGCCAACACTTGTT-----------GTT---------TGTTCTGCAGGAAGACTTCCCTGGGGCGCTGC----ACCTCCAGACGAGGTGGGGCACCTGTCAGTGAGGGCACTCGGGCTCTCCATACTTTGTAGCTCACATGGCAAGTGGTACAGAAG-AACTA-GGTGAGTCTGTCAGCTTAA a score=2346.0 s hg17.chr7_random 434636 73 + 778964 TTGctgtctcccctgctaggtcaaaagcaccaagtatgcatggatggtgtttgtcttattcTTTATTCACTCT s canFam1.chrUn 1897077 52 + 91062872 ------------------GGTTGAGAGCACCAAATAGGCATGGATGCTGTTTGTTTT---CTTTATTTGGTCT a score=1011.0 s hg17.chr7_random 434636 13 + 778964 TTGctgtctcccc s panTro1.chr6 523824 13 + 161576975 TTGCTGCCCCCCC a score=8618.0 s hg17.chr7_random 434709 47 + 778964 GCATGGCGAAGAGACCAACACAGCTATTTTCTGGGGTGCAGAAAGGA s panTro1.chr6 524836 47 + 161576975 GCATGGCAAAGAGACCAACGCAGTTGTTTTTTGGGGTGCAGAAAGGA s canFam1.chrUn 1897129 47 + 91062872 GCGCAGCATGGAGACAAACACAAACATTGTCTGGGATGCAGAAAGGG a score=1501.0 s hg17.chr7_random 434756 16 + 778964 AACAAAGATGCTTTGT s panTro1.chr6 524883 16 + 161576975 AACAAAGATGCTTTGT a score=14567.0 s hg17.chr7_random 434772 171 + 778964 TAAGCTGCTC--TGGCCAC-------TGGGGAGGCTGCAG----CATGTCGTGGTTTGAGGTGGGATCTGTAGGTGG-----GCTTCCTGGGTGC--------------------GGTTCCTGAGCCTTCCC-------------------CAGCCAGCTGCATTCACTGCGCAACGTCCGTATGCTCCCTG-AGCTGAGGATAGAG-------GAGAAACTGCATGTGATTGTGG s panTro1.chr6 524899 171 + 161576975 TAAGCTGCTC--TGGCCAC-------GGGGGACGCTGCAG----CGTGTCATGGTTTGAGGTGGGATCTGTAGGTGG-----GCTTCCTGGGTGC--------------------GGTTCCTGAGCCTTCCC-------------------CAGCCAGCTGCATTCAATGCGCAACGTCCGTATGCTCCCTG-GGGTGAGGATAGAG-------GAGAAACTGCATGTGATTGTGG s canFam1.chrUn 1897223 232 + 91062872 TGGGCCTCTCAGTGGGCACAGTGCCTTGGGCAGCCTGCAGAAGCCCTGAAGGGGCAGAGGGTAGTGGATGTGGCTGGCAGCTGCTTACTGAGGGCTTGCTCTGGGATGAAAACTGGATGCCAGAGCCTTCCCGGAAGAGGCCCTTGCATCTCAAACAGGTGGATGC--TACTCAA-GTGCAGCTTTTCCGTGAGGCTGAGGGTCCAGTGACCGTGAACAACAGTA-GTTATTATGG a score=32411.0 s hg17.chr7_random 434943 354 + 778964 CTGATGGGAGAGGCCACTCATCCTCAAATCTAGGTGGATATACGAGGAATGAGGACTGAGAGGCTGAGCATGGAGCACGCAGCACATAGTAGGAGCCCAAGAACCGTGAACAGTAATAATTATTCTCCagccgggcgcagtgcctcccacctgtaatcccagcactttgggaggccaaggcaggcagatcacctgaggccaggagttcgagaccagcctgggcaacatggtgaaaccccatctctacaaaaaatacaaaaattagccaggtgtggtgccgtgcctgtagtcccagctacttgggaggctgaggcaggaagatcacttgaacccaagaggcagaggtcatagtga s panTro1.chr6 525070 354 + 161576975 CTGATGGGAGAGGCCACTCATCCTCAAATCTAGGTGGATATACGAGGAATGAGGACTGAGAGGCTGAGCATGGAGCACGCAGCACATAGTAGGAGCCCAAGAACTGTGAACAGTAATAATTATTCTCCagccgggcgcggtgcctcccacctgtaatcccagcagttagggaggccaaggcaggcagatcacctgaggccaggagttcgagaccagcctgggcaacatggtgaaaacccatctctacaaaaaatacaaaaattagccaggtgttgtgctgtgcctgtagtcccagctacttgggaggctgaggcaggaagatcacttgaatccaagaggcggaggtcatagtga a score=32452.0 s hg17.chr7_random 435385 348 + 778964 aggaaagaaagaaaggaaaaagaaaagaaaagagaaaagaaaATAACAATGTggccaggcatcgtggctcatgcctgcaatcccagaactttgcggggccaaaagaggaggatcacttgagtccaggagttcaagacccatctgggcaacagagcaagaccctgtctctacaaaaaaatacaaaaattagccaggcatggtggtgcacacctgtagtcccagctattcaggaggctaaggtggcaggatcacctgaacacaagagttcgaggctgcagtgagctatgattgcgccactgcactccagcctgggcaacagagtgagaccttgcctcaaaaCCACACACC s panTro1.chr6 525524 348 + 161576975 AGgaaagaaagaaaggaaaaagaaaagaaaagagaaaagaaaATACAAATGTggccaggcatcgtggctcatgcctgcaatcccagaactttgcggggccaaaagaggaggatcacttgagtccaggagttcaagacccatctgggcaacagagcaagaccctgtctctacaaaaatatacaaaaattagccaggcatggtggtgcacacctgtagtcccagctattcaggaggctaaggtggcaggatcacctgaacgcaagagttcgaggctgcagtgagctatgattgcgccactgcactccagcctgggcaacagagtgagaccttgcctcaaaaCCACACACC a score=19411.0 s hg17.chr7_random 435733 130 + 778964 CACACACACAATGTTCTCTAATATTCAAGTTTTGCATTGTTCACTATGTAGGTAAGGGATGCAAAATTTCACGGGAAATTTTGCCAC-AAACCTCAATAGTCTTCTCTACACATG---GCTCCTGGGtgtggca s panTro1.chr6 525872 130 + 161576975 CACACACACAATGCTCTCTAATATTCAAGTTTTGCATTGTTCACTATGTAGGTAAGGGATGCATCATTTCACGGGAAATTTTGCCAC-AAACCTCAATAGTCTTCTCTACACATG---GCTCCTGGGtgtggcg s canFam1.chrUn 1897660 130 + 91062872 TATAAGGACAGTGTTCTCTTATTTTCAGCTTTCACATTGCTCACCAGGTAAGTCTGGGATGCAAAATTTCAT-ACCAATGTTGCCACTGAATGTCAGTGA---ATTCTGATCATGCCTGCTCTCGGGTGTGGCA a score=135238.0 s hg17.chr7_random 435863 1505 + 778964 ggcactctcagatggccacagggtccccacctcccagtgctcatggcttgtggggtaccctccccttgagtgtgtgtaggtcctgaggctcacccctgcccggtggggtacagcaaaggtgaggagtgagcatcacatatgattcatggcaacatctgccttgccaggggactctctcccttgctggctttgaggaagccagctgccctttcatcagtggctgtaagaggaccccgtggccaggagctgagggtggcctccagtccacagctaagaaagtgaatgctggaaacaaccaagtgcacttgggaacggtcccttcctcagtcgagcctcagataagaatgcagccccagcatggattgcagccttcagaggacccagtaaagccatgcctggactcctgacccacagaCAGCCGGCCCCAGGCCTTCACTGGGGGAAGCTTTATAGATacacacacacacacacacacacacacacacacacacacacatacacatatatacatacatatatatgtatgtatgtatatatatatatatATCTCCTCCTGCTTCAGCC----tttttttttttttc----cagagtcttgctctgtcacccaggatggagtgcagtggcacaatctcagctcactgcaacctctggctcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggtgggcaccaccacttccagcaaatttttgtatttttagtagagacggggtttgaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccgcctcagcctcttaaagtgctgggattatagacgtgagccactgcacctgaccTGACCCATTTTTaagtctagaaaatgtgccttcattatcccttcaaatacctcctacttcccacttttcttctgccttcctgggacatctattcaacagatattagcattgttgcttctgttctccatatccctgaccttttctcttacatacttcttgttcctgtttcattttggTAACATACAGAACTTCATCTCTTTTATAGGCtttttttttttttttttttttttgatgagataaggtctcgctctgtcatccaggctggagtgcggtggcatgatcatagctcttggcagcctcaaccttcctggcccaagtgatcctcccaccccagcctcctgagtagctgggattacaggtgcaccccatcacacccagcttattattttttctttttcttttgagaaggagtcttgctctgtcaccaggctggagtgcagtggcctgatctcagctccctgcaacctccgcctcccaggcttaagcaattctcctgtctcagcctcccgagtaggtgggattacaggtgcctgccaccacacccgactaatttttgtatttttagtagagacgcggtttcaccctcttggccaggctggtctcaaactcctgagctcaagtgatccacccgccttagcctcccaaagtg s panTro1.chr6 526002 1486 + 161576975 ggcactctcagatggccacagggtccccacctcccagtgctcatggcttgtggggtaccctccccttgagtgtgtgtaggtcctgaggctcacccctgcccggtggggtacagcaaaggtgaggagtgggcatcacatatgattcatggcaacatctgccttgccgggggactctctcccttgctggctttgaggaagccagctgccgtgtcatcagtggctgtaagaggaccccgtggccaggagctgagggtggcctccggtccacagctaagaaagtgaatgctggaaacaaccaagtgcacttgggaacggtcccttcctcagtcaagcctcagataagaatgcagccccagcatggattgcagccttcagaggacccagtaaagccatgcctggactcctgacccacagaCAGCCGGCCCCAGGCCTTCACTGGGGGAAGCTTTATAGATacacacacacacacacacacacacacacacac--------------------acatacatatatatgtatgtatg------tatatatatatCTCCTCCTGCTTCAGCCTCCttttttttttttttccagacagagtcttgctctgtcacccaggatggagtgcagtggcacaatctcagctcattgcaacctctggctcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggtgggcaccaccacttccagctaatttttgtatttttagtagagacagggtttgaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccgcctcagcctcttaaagtgctgggattacagacgtgagccaccgcacctgaccTGACCCATTTTTAAGTCTAGAAAATGTGCCTTCATTATCCCTTCAAATACCTCCTACTCCCCACTTTTCTTCTGCCTTCCTGGGACATCTATTCAACAGATATTAGTATTGTTGCTTCTGTTCTCCATATCCCTGACCTTTTCTCTTACATACTTCTTGTTCCTGTTTCATTTTGGTAACATACAGAACTTCATCTCTTTTATAGGC-ttttttttttttttttttttttgatgagataaggtctcgctctgtcgtccaggctggagtgcggtggcatgatcatagctcttggcagcctcaaccttcctggcccaagtgatcctcccaccccagcctcctgagtagctgggattacgggtgcaccccatcacacccagcttattAttttttctttttcttttgagaaggagtcttgctctgtcaccaggctggagtgcagtggcctgatctcagctccctgcaacctccgcctcccaggcttaagcaattgtcctgtctcagcctcccgagtagctgggactacaggtgcctgccaccacacccgactaatttttgtatttttagtagagacgcggtttcaccctcttggccaggctggtctcaaactcctgagctcaagtgatccacctgcctcagcctcccaaagtg a score=79512.0 s hg17.chr7_random 440449 883 + 778964 ccactgcacctggctaatttttctatttttagtagagatggggtttcaccatgttatccaggctggtttcaaactcctgaccAcaggtgatctgcctgccttggcctcacaaagtgctgggatgacaggcgtgagccaccgcgcctggctaatttttgtatttttagtagagatggggtttcaccatgttgtccaggctggtttcaaactcctgacctcaggtgatctgcccgccttggcctcacaaagtgctgggatgacaggcgtgagccaccgcgcccagctGGttcttatgactctgctttaaaattcttggcagatgattccaacatgtgacctatcttggaatttacatccgttaccttaccatgttcaggttgtggctttccttgttcttggtatgacaagtgatctccagatgtatcctggacatttgggttacgatgtttgcagactccttgtcctactctattccaccaggcagttgctctgttcaggtccagggtgtagattgcagcctgtttttgtggtctgtcattccaacagcagtttcgtcttcagagccctggcactgccctcctcgtctgctttattcttctggctctcc-tgggactgctgctcatttcccatgggtgctgcctgcaggggtgaaaggtacctccctgggccgcctggtgtcactgggCTACCTTTTGCTGTGTCAGGACAGAACATGCTCGTTCTGGGTCTCTTTGTGCTAAGAGAGGAAGGGCAGATTTCAGGCTCCTCTGACACTACCTGTGCAGTGCAGACT-GTCCACTCGAACCCCAGTTGCACAGCACAGGTTAATGCACCTGCAGCAGCTTTAAAATCGGCCCTGAAAGCAGACTGTGGGGTGAAGGTG s panTro1.chr6 566262 884 + 161576975 ccaccacacccggctaatttttgtatttttagtagagatggggtttcaccatgttgtccaggctggtttcaaactcctgacctcaggtgatctgcccgcctcagcctcacaaagtgctgggatgacaggcctgagccaccgcacctggctaatttttgtatttttagtagagatggggtttcaccatgttgtccaggctggtttcaaactcctgaccacaggtgatctgcccgccttggcctcacaaagtgctgggatgacaggcgtgagccaccgcgcctggctGGTTCTTAGGACTctgctttaaaattcttggcagatgattccaacatgtgacctatcttggaattcacatccgttaccttaccatgttcaggttgtggctttcctggttcttggtatgacaagtgatctccagatgtatcctggacatttcggttacgatgtttgcagactccttgtcctactctattccgccaggcagttgctctgttcaggtccagggtgtagattgcagcctatttttgtggtctgtcattccaacagcagtttcgtcttcagagccctggcactgccctcctcgtctgctttattcttctg-ctctccctgggactgctgctcatttcccatgggtgctgcctgcaggggtgaaaggtacctccctgggccgcctggtgtcactaggCTACCTTTTGCTGTGTCAGGACAGAACATGCTCGTTCTGGGTCTCTTTGTGCTAAGAGAGGAAGGGCAGATTTCAAGCTCCTCTGACACCACCTGTGCAGTGCAGACTGGTCCACTCGAACCCCAGTTGCACAGCACAGGTTAATGCACCTGCAGCAGCTTTAAAATCGGCCCTGAAAGCAGACTGTGGGGTGAAGGTG a score=220965.0 s hg17.chr7_random 441906 2421 + 778964 cgtaacaaagcacaccaggctgggcagctgaatgaaacaaatttgatttctcaagatcagggtacgggctggctcctcttgaggtctctcttcatgctcatactgcattctccctgtatgcacgtctatctccaaaatttctccttttatgaggacagcagtcatattggatgagtgcccaacctcatgacctcatctcacctcaatcacgtctgcaaagaccttgtctccaaacaggatcacttcctgaactatgggggttaggacttcagcatatgaattttggggagacgccattcagcccgtaacaCTCCCATGAggcctttgctcatgctatttcctctctctccaacactccccgtctcccacctccgccctttcacctggctatgtgacatggtttggctgtgtccccacccaaatctcatcttgaattgtagctcccacaattcccacgtgttgtgggaaggacccagtgggaggtaactgaataatgggggcaggtctttcctgtgctgttcctatgatggtgaataagtctcacgagatctgacggttttataagggggagtttccctgcacaggctctctcattttctctttgcctgctgccatcatgtaagatgtgacttgctccttcccgccttcggccatcattgtgaggcctccccagccatgtggaactgtgagtccagtaaacctttccctgtataagttacccagtctcggccatgtctttattagcagcgtgaaaatggactaatacactgtgtttacttattcttcatatttcacctctgctaccatttgttcagggaagccttaaaagtctagttcaacatcccttgacactcattctctcaggaccaccacggttaaacacatactaatttatccttccattaagggctatctcatcctgcaagaccctaagatctgggagagcagggaccatggccagtttctacatcattgtcatcctgtcccacatgttgcagacagtgcctggtcaaacaaatgcctgttggaggaaacaatGAATGAAGGTTACTGAATATGCTACATAACAACTTTTCAGAAGTACTGATGggccgggcgtggtggctcacgcctgtaatcccagcactctgggaggctgaggcgggcggatcacgaggtcaggacatcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagctgggcgtggtcgtgggcacctgcagtcccagctacttgggaggctgaggcaggagaatggcatgaacctgggaggcagagtctgcagtgagcggagatcgcgccactgcactccaggctgggcgacagagcaagattccatctcaaaaaaaaaaaaaaaagaCGTACCGACAAACACCACCATTTTGCAACACGAAGATCAACAACAAAAAAGAAGGTCAAACTTGAAGTTCTGTCCTAAAATTACACACATTCTGCCTTTAGAAAACTCAGTGCATGGTCACAGATGAGAAGTGCCTGGCTAACCAGACTTGGGGACTCCTGGTTTGCAGTGAGTGCTGTCAAACTCGCGTTCTAGGCTGGGCTCACAGCAACTCCGACTCCAAGCTGTTTAGGCGCCTCTGTCTCCACTCAAGTCCACAGTCAAGGTCACTACTGTGAAacactgtcttgcttttaatttccaagctgccttgttatttcttgggagtaggccaagctaactttaggaggaacttagtttatagtttaactttgaaacaaagatgataacagccctttcctgaagccaacctccttcttgcctggggaccagaatgcttttgtaagactaacacatgagccacaagattagaaattgtggtttgagtcatgcagctagaggccacaagattccaaacctccccagttgctccttaggataacaccactatcatcaactctaagattggtgctcaagatatttttcaggctctgcattctgatgcaccaggtgccaccacccacaccactaatctggctcaaccagttctgtgatcccacccaggaacagaagacagcaagagaatcaactttgactctccatggtttcatctccaacccgaccaataagcactgccctctccctggccccctacctgcctaattatccttagatgacccatctcaggattttcagaacctggtttgagcaataaagctccagtgtcctttagccagtttctgcatgcagccagtttctgcatgcagccagtttctgcatgcattaaactctctattgcaattcccctgtcttgataaattggctctacctgggcagcgagtaaggcgaacctattgggcggctacGCCTGAGATCTAATGACAGGCTGCACGTGAAGCCCAGACCAGGCACCTGTCTTACACCACAGGGGGAT s panTro1.chr6 567720 2394 + 161576975 CGTAACAAAGCACACCAGGCTGGGCAGCTGAACGAAACAAACTTGATTTCTcaagatcagggtactggctggctcctcctgaggtctctcttcatgctcatacggcattctccctgtatgcacatctatctccaaaatttctccttttatgaggacagcagtcatattggatgagtgcccaacctcatgacctcatctcacctcaatcacgtctgcaaagaccttgtctccaaacaggatcacttcctgaactatgggggttaggacttcagcatatgaattttggggacacgccattcagcccgtaacaCTCCCATGAggcctttgctcatgctatttcctctctctccaacactccccgtctcccacctccgccctttcacctggctatgtgacatggtttggctgtgtccccacccaaatctcatcttgaattgtagctcccacaattcccacgtgttgtgggaaggacccagtgggaggtaactgaataatgggggcaggtctttcctgtgctgttcctatgatggtgaataagtctcacgagatctgacggttttataagggggagtttccctgcacaggctctctcattttctctttgcctgctgccatcatgtaagatgcgacttgctccttcccgccttcagccatcattgtgaggcctccccagccatgtggaactgtgagtccagtaaacctttccctgtataaattacccagtctcggccatgtctttattagcagcgtgaaaacggactaatacactgtgtttacgtattcttcatatttcacctctgctaccatttgttcagggaagccttacaagtctagttcaacatcccttgacactcattctctcaggaccaccacagttaaacacatactaatttatccttccattaagggctatctcatcctgcaagaccctaagatctgggagagcagggaccatggccagtttctacatcattgtcatcctgtcccacatgttgcagacagtgcctggTCAAACAAATGCCTGTTGGAGGAAACAATGAATGAAGGTTACTGAATATGCTACATAACAACTTTTCAGAAGTACTGATGggccaggcgtggtggctcacgcctgtaatcccagcactctgggaggctgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagctgggcgtggtcatgggcacctgcagtcccagctacttgggaggctgaggcaggagaatggcatgaacctgggaggcagagcctgcagtgagcggagatcgcaccactgcactccaggctgggcgacagagcaagattccatctcaaaaaaaaaaaaaa--GACGTACCGACGAACACCACCATTTTGCAACACGAAGATCAACAACAAAAAAAAAGGTCAAACTTGAAGTTCTGTCCTAAAATTACACACATTCTGCCTTTAGAAAACTCAGTGCATGGTCACAGATGAGAAGTGCCTGGCTAACCAGACTTGGGGACTCCTGGTTTGCAGTGAGTGCTGTCAAACTCGCGTTCCAGGCTGGGCTCACAGCAACTCCGACTCCAAGCTGTTTAGGCGCCTCTGTCTCCACTCAAGTCCATAGTCAAGGTCACTACTGTGAAACACTGtcttgcttttaatttccaagctgccttgttatttcttgggagtaggccaagctaactttaggaggaactta-----tagtttaactttgaaacaaagatgataacagccctttcctgaagccaacctccttcttgcctggggaccagaatgcttttgtaagactaacacatgagccacaagattagaaattgtggtttgagtcatgcagctagaggccacaagattccaaacctccccaattgctccttaggataacaccactatcgtaaactctaagattggtgctcaagatatttttcaggctctgcattctgatgcaccaggtgccaccacccacaccactaatctggctcaaccagttctgtgatcccacccaggaacagaagacagcaagagaatcaactttgactc--cacggtttcatctccaacccgaccaataagcactgccctctccctggccccctacctgcctaattatccttaaatgacccgtctcaggattttcagaacctggtttgagcaataaagctccagtgtcctttagccagtttctgcatgcagccagtttctgcatgca-----------------ttaaactctctat-gcaattcccctgtcttgataaattggctctacctgggcagcgagtaaggcgaacctattgggcggctacGCCTGAGATCTAATCACAGGCTGCACGTGAAGCCCAGACCAGGCACCTGTCTTACACCACAGGGGGAT a score=35990.0 s hg17.chr7_random 444327 374 + 778964 CCAGTCCACAGAACCAGCGTCCTTCCCTCCTGGAACGGACCTTCCCAAAGCCAGAGGGGCTCTAGGCGGCTCAAACAGGGGCTTCCCGG-----CTACCCTGGTCCCAGGCGG------GACCACTCAGGTTCCTT------CTCCAAGCCCCCTAGGCTGCAGGGCAGGCTTCCCTAGGGGCAGGCCCAGGCCTATAGCCCGGGACCCGCATCCCGGGCGAGCTGCACCCTCCCGAG-ACCTTCCCCATCTGTACAATGGGGAC----------AGGACAAGGCCCAGCAGGCAGGCTGG--------CGGGGGTTCCGGCGACAGAGGGGGACAGCGGGCGAGCACG-----ACAAGAGCACAGGCCCACGTGCGCACCGGCGGGGAGGAAGTAGCCCGGCGCCCCGCCCGCA s panTro1.chr6 570114 379 + 161576975 CCAGTCCACAGAACCAGCGCCCTTCCCTCCTGGAACGGACCTTCCCAAAGCCAGAGGGGCTCTAGGCGGCTCAAACAGGGGCTTCCCGG-----CTACCCTGGTCCCAGGCGG------GACCACCCAGGTTCCTT------CTCCAAGCCCTCTAGGCTGCAGGGCAGGCTTCCCTAGAGGCAGGCCCAGGCCTATAGCCCGGGACCCGCATCTCGGGCGAGCTGCACCCTCCCGAG-ACCTTCCCCATCTGTACAATGGGGAC----------AGGGCAAGGCCCAGCAGGCCGGCTGG--------CGGGGGCTCCGGCGACTGTGCGGGACAGCGGGCGAGCACGACGGTACAAGGGCACAGGCCCACGTGCGCACCGGCGGGGAGGAAGCAGCCCGGCGCCCCGCCCCCA s danRer1.chrNA 118245280 370 - 390413307 CAAGTCCAGGG----AGAGTTGTGGACCCCTGG---GTAGCTTGCTGGGGTCAGA-GGCCCCTAGGTGGAGGCCAAGGGGGCACCCTGGGGCCTCTACTGCAAGTCCAGGCAGAGAGGTGGACCCCTGGGTAGCTTGCTGGGGTCCTAGTCCCCTAGGTGGAGGGCCAG---------GGGGCACCCTGGGGCCTATACTTCAAG-------TCAAGGGAGAGAGGTGGACCCCTGGGTAGCTTGC------------TGGGGTCTTAGGTCCCTAGGTGGAGGGCCAGGGGGCACCCTGGGGCCTATACTGCAAGTCCAGGGAGAGAGGTGGACCCCTGGGAAGCTTG-----CTGGGGTCAGAGGCCCCTAGGTG----GAGGGCCAGGGGGCACCCTGGGGCCTCTACTGCA a score=-376.0 s hg17.chr7_random 444701 7 + 778964 GCGCGGA--- s panTro1.chr6 570493 7 + 161576975 GCGCGGA--- s canFam1.chrUn 1909170 7 + 91062872 GCGCCAA--- s danRer1.chrNA 118245650 4 - 390413307 ------AGTC a score=14889.0 s hg17.chr7_random 444708 24 + 778964 CCGGAAGTGCTGCCGTAATCTGCG s panTro1.chr6 570500 24 + 161576975 CCGGAAGTGCTGCCGTAATCTGCG s mm5.chr5 136556398 24 + 149219885 CCGGAAGTCTTGCCGTAAAGCGTG s rn3.chr12 30624250 24 - 46649226 CCGGAAGTCTTGCCGTAAAGCGTG s canFam1.chrUn 1909177 24 + 91062872 CCGGAAGAGGAGCCGTAATCCGCG s danRer1.chrNA 118245654 24 - 390413307 CAGGGAGAGTTGTGGACCCCTGGG a score=73212.0 s hg17.chr7_random 444732 273 + 778964 CTGAGA--GTCGCGAAAGCGCT--GTT-CCCCTTAGTGACCGGCGACGCGGGCAAGATGGCGGCGCT--------------GGGGGTGGCGG----------AGGCCGTGGCGGCCCCACACCCGGCTGAGGGGGCCGAGACGGCTGAGGCGGT-----GGAGCT-------------------GAGCCGCG---CCCTGAGCCGCCTGCTGCCGGGGCTGGAGGCCGACAGCAAGCCGGGCCGGCGGCGCGCCTTGGAGGCCCTGCGGCGCGCGCTGGAGGAGCCAG---------GCCCTGCCGCCGACC------------CCACCGCTTTCCAGGGCCCCTGGGCG s mm5.chr5 136556422 269 + 149219885 CTCGGACCATCGTACTAGCGCC--GGT-TCCCTTGGAGACAGGCAACGCGCTCAAGATGGCGGCGCC--------------GGCGGAGGCGG----------AGGTGGCCGCGGCCCCG-----GGCTTAA----CCGAGGCGGCTGAAGCCGC-----GGAACT-------------------GACCCGCG---CGCTAAGCCGCCTGCTACCGGGGCTGGAGACGGAAAGTAAGCTGGGGCGGCGGCGCGCTCTGGAGGCTCTGGAGCAGGTACTGGAAGAGGCGGTGC------GGCCCGGCGCGGATT------------CCGCGGCCTTCCAGGGCCCCTGGGCC s rn3.chr12 30624274 263 - 46649226 CTACGACCATCGTACTAGCGCC--GGT-TCCCTTGGAGACAAGCAACGCGTTCAAGATGGCGGCGCC--------------GGCGGAGGCGG----------AGGTGGCCGCG-----------GGCTTCG----CCGAGGCGGATGAAGCAGC-----GGAACT-------------------GACCCGCG---CGCTAGGTCGTCTGTTACCGGGACTGGAGACCGAAAGTAAGCTGGGGCGGCGGCGCGCGCTGGAAGCTCTGGAGCACGCACTGGAAGAGGCGGTGC------GGCCCGGAACGGATT------------CCGCTGCCTTCCAGGGCCCATGGGCT s canFam1.chrUn 1909201 288 + 91062872 CCGAGGCCGTCGTGACAGCGCC--GGTCTCCCCTGGCGACGGGCAACGCGCGGAAGATGGCGGCCCT--------------CGTAGCGGCGG----------AGTCCGCGGCGTCCCCG-----GGCCTGG----CCGAGACGGCCGAGGCGGC-----GGAGCT-------------------AAGCCGCG---CCCTGAGCCGCCTGCTGCCGGGGCTGGAGGCCGACAGCAAACTGGGCCGGCGGCGCGCGCTCGAGGCGCTACAGCGCGCGCTCGAGGCAGCGTGGCCCGAGGAGTCCGCCGCCAAccccgccgccgcggccgccgccTTCCAGGGCCCGTGGGcg s danRer1.chrNA 118245678 306 - 390413307 -------TAGCTTGTTGGGGTCTTAGG-CCCCTAGGTGGATGGCCA-GTGGGCACCCTTGGGCCTTTACTTCTAGTCCAGGGAGAAAGGTGGACCCCTGGGTAGCTTGCTGGGGTCAGA-----GGCCCCT----GGGTGGAGGCCAAGGGGGCACCCTGGGGCCTCTACTGCAAGTCCAGGGAAAGTTGTGGACCCCTGGGTAGCTTGCT---GGGGTCAGAGGCCCCTAGGTGG--AGGCCAAGGGGGCACCCTGGGGCCTCTACTGCAAGACCAGGGAGAGTTGT---------GGACCCCTGGGTAGC------------TTGCTGAGGTCAAAGGCCCCTAGGTG a score=154378.0 s hg17.chr7_random 445005 396 + 778964 CGCCTACTGCTGCCGCGCTTGCTGCGCTGCCTGAGCGACCCCGCCGAGGGCTGCCGCGCGCTGGCAGTGCACCTGCTGGATCTGGGCctgcgccgcgccgcgcggccccgcgatgccctgccgcgcctgctgcccgcgctcgccgcgcgcttggccggccccgtgcccgcgc---gccgcccgcccgaggcctgtgaggagctgcgcctggcgcttgtgcagctgctgggcctggccgtggacctgtgcggcgccgcgctcgcgccccaccTGGACGACGCTCTGCGCGCGCTGCGCTGCTCCCTGCTCGACCCCTTCGCCGCCGTGCGCCGCGAGAGCTGCAGCTGCGCCGCCGCCCTGGCGCAGGCCACGCCCGGTGAGCAccccgggccccgctcc s mm5.chr5 136556691 393 + 149219885 CGTCTGCTGCTGCCGCGCCTGCTGCGGCTTCTAAGCGATCCGGCCGAGGGCTGCCGCGCGCTGGCCGCTCACCTGCTCGACCTTGGCCTGCGCCGCGCCGCGCGGCCCCGCGACGCTCTGCCGCGTCTGCTGCCGGCGCTCAGCGCACGCCTGGCCCGACCTGAACTCGCGC---GGCCGCCGCCGGAGCCCTGCGAGGAGCTGCGTCTCGCCCTCGTGCAGCTGCTCCACCTCGCCGTAGACCTGGGCGGCGCCGCGCTCGCGCCCCACCTGGACGACGCCGTGCGCGCCTTGCGGGCCGCGCTGCTCGACCCCTTCGCTGCGGTGCGCCGGGAGGGCTGCGAGTGCGCAGCCGCTCTGGCCCGTGCCACTCCGGGTGAGCGTCCTA---TCCGCTTC s rn3.chr12 30624537 393 - 46649226 CGTCTGCTGCTGCCTCGCCTGCTGCGACTTCTGACCGACCCAGCCGAGGGCTGCCGCGCGCTGGCTGCTCACCTGCTGGACTTAGGCCTTCGCCGTGCCGCGCGGCCCCGCGATGCTCTGCCGCGCCTGTTGCCCGCGCTCACCGCACGCCTTGCCCGACCAGAATCCACGC---GGCCACCGCCTGAACCCTGCGAAGAGCTGCGTCTTGCCCTCGTGCAACTGCTTCACCTGGCCGTGGACCTGGGCGGCGCCGCGCTCGCGCCCCACCTGGACGACGCGGTGCGCGCGTTGCGGGGTGCGCTGCTCGACCCCTTCGCCGCGGTGCGCCGGGAGGGTTGCGAGTGCGCAGCCGCTCTGGCGCGTGCCATTCCGGGTAAGTGTCAGA---TCCCCTTC s canFam1.chrUn 1909489 392 + 91062872 cgcctgctgctgccgcgcctgctgcgctgcctggccgacccggccgaaggctgccgcgcgctcgccgcgcacctgctgagtcaaggcctgcggcgcgccgcgcggcccggcgacgccctgccgcgcctgctgcccgcgctcgccgcgcGCCTggccgggccccagctcgcgcgcggccggccgcccgAGGCCTGCGAGGAGCTGCGCCTGGCGCTCGTGCAGCTGCTCGGCCTGGCGGTGCGCCTGGGCGGCGCGGGGCTGGCGCCCCACCTGGACGACGCGGTGCGCGTGCTGCGCTGCACGCTGCTCGACCCTTTCGCCGCCGTTCGCCGCGAGAGCTGCGAGTGCGCCGCGGGCCTGGCGCGCGCCACGCCAGGTGCGGGCCTCG---TCCC---- a score=-560.0 s hg17.chr7_random 445401 1 + 778964 c- s mm5.chr5 136557084 1 + 149219885 C- s rn3.chr12 30624930 2 - 46649226 CC a score=17703.0 s hg17.chr7_random 446102 198 + 778964 GGGAGGGGATTGAATCTACCATGAGCTTTTGGAGTAGCCCTTATTTTAGCCCATTCTGGATGAGTCCATCCATCAACGACTGTGACTGGATCAGGTAACCCAAGACTAAGCCAACCAGCTCAGGACAGTTCCTGAGGCCCCTGTCCAGTGGCCAGGTGGCCTTGCTTAGCAGTGGTCCCATGAGAAGCAAAGAGAGTT s panTro1.chr6_random 278165 198 - 67355074 GGGAGGGGATTGAATCTACCATGAGCTTTCGCATTAGACCTTATTTTAGCCCATTCTGGATGAGTCCATCCATCAATGACTGTGACTGGATCAGGTAACCCAAGACTGAGCCAACCAGCTCAGGAAAGTTCCTGAGGCCCCTGTCCAGTGGCCAGGTGGCCTTGCTTAGCAGTGGTCCCATGAGAAGCAAAGAGAGTT a score=60121.0 s hg17.chr7_random 446300 320 + 778964 TACTAAAGGCTTC---TGGGAAAGGGACCTTGCTCCCTGGGGATAACTACACTTCTGGAAGCCAGCCCTCACTTTCCTTCTGAACGATGAGGTGGGTGAATGGGAAGCTTGGGAGGCAGTGTTGGGAAGA---GGCTGCTGCTgcaaagtacagaaatggacagaacctgggtctttgaaggcctcgttgaattcctgaattcaacccacccCAAGGTTCCCTATGGTGTACTTGacattggtggcccccaaagagcctcagacactggcctggctccccact-tgtgtagttcctt-ctgcgttggctctgggcctggctgtgtggc s panTro1.chr6_random 278363 320 - 67355074 TACTAAAGGCTTC---TGGGAAAGGGACCTTGCTCCCTGGGGATAACTACACTTCTGGAAGCCAGCCTTCACTTTCCTTCTGAATGATGAGGTGGGTGAATGGGAAGCTTGAGAGGCAGTGTTGGGAAGA---GGCTGCTGCTgcaaagtacagaaatggacagaacctggatctttgaaggcctcgttgaattactgaattcaacccacccCAAGGTTCCCTATGTTGTACTTGacattggtggcccccaaagagcctcagacactggcctggctccccact-tgtgtagttcctt-ctgtgttggctctgggcctggctgtgtggc s mm5.chr5 12721502 265 - 149219885 TAATGATGGCTTCAG-AGGGAAAGAGGTCTTTCTTTCTGAAGAGCACAGCACTGCCAGAAGCCAACCCTTG-TTTTCTTCTGGCTA--GAGGTGGCT--ATACCATACTTGA----------TGGGG-----------------------ACAGAACCAGGTAAAAGCCAGGTGCTGCAAGGCCCTGCCCAACTACTGACTGAAACCTGCCAGA-------------------TGGCATCAGTGGCCTCCAAGCAGCCACAAAGCCTG---TGGGGCACTCTC-TGTCTGGTCCCCTGCCGTGGTGACTC-AAGATAGGCTGTATGAC s rn3.chr12 16075763 283 + 46649226 TAATGATGGCTTCAGAGAGAAAAGAGGTCTTCCTTTCTGAAGAGCACGGCACCGTTAGAAGCCAACCCTTG-TTTCCCCCTGGCTAGTGGGG------------------------------CAGGAAGATATGGCCGTGCTTGCTGGGGACAGAACCCGATAAAAGCTGGGTGTTGCAAGGCTCTGCTAAACTACTGACTGAAACCTGCTGGA----------TTGCAGGCTTGGCATCGGTGACCTGCAAGCAGCCACACAACCTG---TGGGTCACTCTTCTGTCTGGTCCCCTGCCGTGGTGATTC-GGGGTAGGCTGTAAGAC a score=8263.0 s hg17.chr7_random 446620 75 + 778964 tggg-------tttggc----caatggtacattagcaa--------gtgtgatgccaggagaggctggagaagcacttgtccactgggagcggg s panTro1.chr6_random 278683 75 - 67355074 tggg-------tttggc----caatggtacattagcaa--------gtgtgatgccaggagaggctggagaagcacttgtccactgggagcggg s mm5.chr5 12721767 93 - 149219885 TATGGCATATAGCTGGCAGCACAGTGGCGCATTGACGAGCTGACCTGTGTGATGACA-TAAAGGCAGAACAGGACTTTGCAGACTGAGGGAAGG a score=47097.0 s hg17.chr7_random 446695 505 + 778964 tccttcttggcgcccagccaccatgcagtggggaagcccaagcagtcatgtggagggactcctgggggtggagctgggactcctggccagtggcatccctgagtgccaggccggtggccaccaccaaccaccctgtgtggaaatcagccatcccagccaacaccatgggagggaggaggcctgccccatcaacccacagaaccatgaggaagagtgaatttttttgtcaaggcactctgtttgaggtggtttgttatgtaacaataaataaccaaaataCCCGAGTACCAGTTATTGGAGCCAAGAAATCCTTATTGAATGGGTTGGGAATTGTCTCTGGCTCCAAATCTCTATCCCTTCCAGCGACCCTGGACAGCAAGCTGGGAAAACGAGACACTCCCACATCACAAATGGTGAGCCTGGACTGCCAGTCCCTAGGGCAGAACCTCCAGATTTACAAAATAGTCTCCTGTGTGAGCGTGAACTGTCTTCCAAGAGGGGTTTC s panTro1.chr6_random 278758 505 - 67355074 tccttcttggcgcccagccaccatgcagtggggaagcccaagcagtcatgtggagggactcctaggggtggagctgggactcctggccagtggcatccctgagtgccaggctggtggccaccaccaaccaccctgtgtggaaatcagccatcccagccaacaccatgggagggaggaggcctgccccatcaacccacagaaccatgaggaagagtgaattattttgtcaaggcactctgtttgaggtggtttgttatgtaacaataaataaccaaaataCCCTAGTACCAGTTATTGGAGCCAAGAAATCCTTATTGAATGGGTTGGGAATTGTCTCTGGCTCCAAATCTCTATCCCTTCCAGTGACCCTGGACAGCAAGTTGGGAAAACGAGACCCTCCCACATCACAAATGGTGAGCCTGGACTGCCAGTCCCTAGGGCAGAACCTCCAGATTTACAAAATAGTCTCCTGTGTGAGCGTGAACTGTCTTCCGAGAGGGGTTTC a score=10102.0 s hg17.chr7_random 447200 122 + 778964 CCCAGGTTCCTAGCACTGCGTGGGTATGAACTTTCTTCCGAGAG----------GGGTTTCCCCAGGTTCCT--------------AGCACTGTGTGGGTGTG--AACTGTCTTCCGAGAGGGG----TTTCCCCAGGTTCCTAGCGCTGCG- s panTro1.chr6_random 279263 122 - 67355074 CCCAGGTTCCTAGCGCTGTGTGGGTGTGAACTGTCTTCCGAGAG----------GGGTTTCCCCAGGTTCCT--------------AGTGCTGCACGGGTGTG--AACTGTCTTCCGAGAGGGG----TTTCCCCAGGTTCCTAGCGCTGCG- s danRer1.chr7 2363354 152 + 45413732 CCAAGGTCCCCAAAGGTATGTGTGTATCAACTGAGTCCCCAAAGGTAGGCGTGTGTGTATCACAAGAGTCCTCAAAGTGTAGCTAAAGCAGTGTGTGTGTGTATCAACAGAGTCCTCAAATGTGTGTATTTCCACTGTAGTCTAA-ACTAAAT a score=3061.0 s hg17.chr7_random 447322 66 + 778964 TGGGTGTGAACTGTCTTCCGAG------AGGGGTTTCCCCAGGTTCCTAGTGCTGCACGGGTGTGAACTGTC s panTro1.chr6_random 279385 66 - 67355074 TGGGTGTGAACTGTCTTCCGAG------AGGGGTTTCCCCAGGTTCCTAGTGCTGCACGGGTGTGAACTGTC s fr1.chrUn 323323077 32 + 349519338 TGGATGTGAGCCGCCT----------------------------------------GTGGATGTGAGCCGCC s danRer1.chr7 2363506 72 + 45413732 TAATTATAGACACTCCTNNNNNNNNNNCAGAGTCCTCAAAGTGTAGCTAAAGCAGTGTGTGTATCACCAGTG a score=1936.0 s hg17.chr7_random 447388 10 + 778964 TTCCGAGAGG s panTro1.chr6_random 279451 10 - 67355074 TTCCGAGAGG s danRer1.chr7 2363578 10 + 45413732 TCCCCAAAGG a score=1637.0 s hg17.chr7_random 447398 17 + 778964 GGTTTCCCCAGGTTCCT s panTro1.chr6_random 279461 17 - 67355074 GGTTTCCCCAGGTTCCT a score=9096.0 s hg17.chr7_random 447415 75 + 778964 AGCTCTGTGTGGGTGTGAACTGTGTTCCGAGAG----------GGGTTTCCCCAG-GTTCCTAGCGCTGCGTGGGTGTGAACTGTC s panTro1.chr6_random 279478 75 - 67355074 AGCGCTGCGTGGGTGTGAACTGTCTTCCGAGAG----------GGGTTTCCCCAG-GTTCCTAGTGCTGCACGGGTGTGAACTGTC s danRer1.chr7 2362106 86 + 45413732 AGCAGTGTGTGTGTATCACCAGTGTCCCCAAAGGTGCGTGTGTGTGTATCACCGGTGTCCCCAAAGGTGTGTGTGTGTGTATTACC a score=0.0 s hg17.chr7_random 447490 8 + 778964 TTCCGAGA a score=764.0 s hg17.chr7_random 447490 8 + 778964 TTCCGAGA s panTro1.chr6_random 279349 8 - 67355074 TTCCGAGA a score=6578.0 s hg17.chr7_random 447498 77 + 778964 GGGGTTTTCCCAG-GTTCCTAGCGCTGTGTGGGTGTG--AACTGTGTTCCGAGAGGGG--------TTTCCCCAGGTTCCT---AGCGCTG----------- s panTro1.chr6_random 279357 77 - 67355074 GGGGTTTCCCCAG-GTTCCTAGCGCTGCGTGGGTGTG--AACTGTCTTCCGAGAGGGG--------TTTCCCCAGGTTCCT---AGTGCTG----------- s danRer1.chr7 2362192 102 + 45413732 AGAGTCCTCAAAGTGTAGCTAAAGCAGTGTGTGTGTATCACCAGTGTCCCCAAAGGTGTGTGTGTATGTCACCAGAGTCCTCAAAGTGTAGCTAAAGCAGTG a score=5511.0 s hg17.chr7_random 447575 102 + 778964 TGCGGGTGTGAACTGTGTTCCGAGAGGGG--------TTTTCCCAGGTTCCT--------------AGCACTGTGTGGGTGTGAACTGTCTTCCGAGAGGGG------TTTCCCCAGGTTCCTAG-CGCTG s panTro1.chr6_random 279434 102 - 67355074 CACGGGTGTGAACTGTCTTCCGAGAGGGG--------TTTCCCCAGGTTCCT--------------AGCGCTGCGTGGGTGTGAACTGTCTTCCGAGAGGGG------TTTCCCCAGGTTCCTAG-TGCTG s fr1.chrUn 323323109 102 + 349519338 TGTGGATGTGAGCCGTCTGTGGATGTGAG--------CCTCCTGTGGATGTG--------------AGCCGCCTGTGGATGTGAGCCGTCTGTGGATGTGAG------CCGCCTGTGGATGTGAGCCGCC- s danRer1.chr7 2362294 122 + 45413732 TGTGTGTATCACCAGTGTCCCCAAAGGTGTGTGTGTATGTCACCAGAGTCCTCAAAGTGTAGCTAAAGCAGTGTGTGTATCACCAGTGTCCCCAAAGGTGTGTGTGTATGTCACCAGAGTCC--------- a score=5516.0 s hg17.chr7_random 447677 68 + 778964 ----------------------------TGTGGGTGTGAAC------TGTGTTCCGAGAGGGGTTT--------CCCCAG----------GTTCCTAGCGTTGTGTGGGTGTGAACTGTG s panTro1.chr6_random 279536 68 - 67355074 ----------------------------CACGGGTGTGAAC------TGTCTTCCGAGAGGGGTTT--------CCCCAG----------GTTCCTAGCTCTGTGTGGGTGTGAACTGTG s fr1.chrUn 323323109 68 + 349519338 ----------------------------TGTGGATGTGAGC------CGTCTGTGGATGTGAGCCT--------CCTGTG----------GATGTGAGCCGCCTGTGGATGTGAGCCGTC s danRer1.chr7 2362416 120 + 45413732 TCAAAGTGTAGCTAAAGCAgtgtgtgtgtgtgtgtgtgtATCACCAGTGTCCCCAAAGGTGTGTTTGTGTATTACCCGAGTCCTCAAAGTGTAGCTAAAGCAGTGTGTGTATCACCAGTG a score=24522.0 s hg17.chr7_random 447745 469 + 778964 ------TTCCGAGAGGGGTTTCCCCAGGTTCCTAGCTCCGTGTGGGTGTGAACTGTCTTCCGAGAGGGGTTTCCCCAG-GTTCCTAGCGCTGTGTGGGTGTGAACTGTGTTCCGAGAG-------------------GGGTTTCCCCAG-GTTCCTAGCGTTGTGTGGGTGTGAAC------TGTCTTCCGAGAGGGGTT------TCCCCAGGTTCCT--------------AGCTCCGTGTGGGTGTGAACTGTCTTCCGAGAGGGG--------TTTCCCCAGGTTC------------CTAGCGCTGTGTGGGTGTGAACTGTGTTCCGAGAGGGG--------TTTCCCCAGGTTCCT--------------AGCTCCGTGTGGGTGTGAAC------TGTCTTCCGAGAGGGGTTT--------CCCCAG----------GTTCCTAGCGCTGTGTGGGTGTGAACTGTGTTCCGAGA------GGGGTTTCCCCAGGTTCCTAG--------------CGCTGTGTGGGTGTGAAC-------TGTCTTCTG-ACAGG---GGGTTT-----CCCAGGTTCCTAG--------------CACTGTGTGGGTGTGAACTGTCTTCTGACAGG s panTro1.chr6_random 279553 468 - 67355074 ------TTCCGAGAGGGGTTTCCCCAGGTTCCTAGCTCTGTGTGGGTGTGAACTGTGTTCTGAGAGGGGTTTCCCCAG--TTCCTAGCGCTGTGTCGGTGTGAACTGTCTTCCGAGAG-------------------GGGTTTCCCCAG-GTTCCTAGCTCTGTGTGGGTGTGAAC------TGTCTTCCGAGAGGGGTT------TCCCCAGGTTCCT--------------AGCTCCGTGTGGGTGTGAACTGTCTTCCGAGAGGGG--------TTTCCCCAGGTTC------------CTAGCGCTGTGCGGGTGTGAACTGTGTTCCGAGAGGGG--------TTTTCCCAGGTTCCT--------------AGTGCTGTGTGGGTGTGAAC------TGTCTTCCAAGAGGGGTTT--------CCCCAG----------GTTCCTAGCGCTGTGTGGGTGTGAACTGTCTTCTGACA------GGGGGTTTCCCAGGTTCCTAG--------------TGCTGTGTGGGTGTGAAC-------TGTCTTCTG-ACAGG---GGGTTT-----CCCAGGTTCCTAG---------TGCCACAC-----AGGTGTGAACTGTCTTCTGACAGG s fr1.chrUn 323323177 473 + 349519338 ------TGTGGATGTGAGCCGCCTGTGGATGTGAGCCGCCTGTGGATGTGAGCCGTCTGTGGATGTGAGCCTCCTGTG-GATGTGAGCCGTCTGTGGATGTGAGCCTCCTGTGGATGT-------------------GAGCCTCCTGTG-GATGTGAGCCTCCTGTGGATGTGAGC------CGTCTGTGGATGTGAGCC------GCCTGTGGATGTG--------------AGCCGCCTGTGGATGTGAGCCGCCTGTGGATGTGAG--------CCGCCTGTGGATG------------TGAGCCTCCTGTGGATGTGAGCCTCCTGTGGATGTGAG--------CCTCCTGTGGATGTG--------------AGCCGTCTGTGGATGTGAGC------CGCCTGTGGATGTGAGCCG--------CCTGTG----------GATGTGAGCCTCCTGTGGATGTGTAGTCCATGCT----------GGGGTGTCACCTGCTGACTCA---------------GCTGCAGATGTTGGAATATTTCTGTGCTTCCTGAACAGG---AAGCGGA---ACTCTGTTTCCTC---------------CTCTGGGAGCAGGTGAACCACAATTAAACAGG s danRer1.chr7 2362536 621 + 45413732 TCCCCAAATGTATGTGTGTATCACCAGAGTCCT--CAAAGTGTAGCTA-AAGCAGTGT------GTGTGTATCACCAGTGTCCCCAAAGGTGTGTGTGTATCAACTGAGTCCCCAAAGTGTAGCTAAAGCAGTGTGTGTGTATCACCAGTGTCCCCAAAGGTGCGTGTGTGTGTATCACCGGTGTCCCCAAAGGTGTGTGTGTGTATTACCAGAGTCCTCAAAGTGTAGCTAAAGCAGTGTGTGTGTATCACCAGTGTCCCCAAAGGTGTGTGTGTATGTCACCAGAGTCCTCAAAGTGTAGCTAAAGCAGTGTGTGTATCACCAGTGTCCCCAAAGGTGTGTGTGTATGTCACCAGAGTCCTCAAAGTGTAGCTAAAGCAGTGTGTGTGTGTGTATCACCAGTGTCCCCAAAGGTGTGTTTGTGTATTACCCGAGTCCTCAAAGTGTAGCTAAAGCAGTGTGTGTATCACCAGTGTCCCCAAATGTATGTGTGTATCACCAGAGTCCTCAAAGTGTAGCTAAAGCAGTGTGTGTGTATCACC-------AGTGTCCCC-AAAGGTGTGTGTGTATGTCACCAGAGTCCTCAAAGTGTAGCTAAAGCAGTGTGTGTGTATCAACTGAGTCCCCAAAGG a score=5147.0 s hg17.chr7_random 448214 51 + 778964 GGGTTTC-CCAGGTTCCT--------------AGCGCTGCACGGGTGTGAACTGTCTTCTGACAGG s panTro1.chr6_random 280021 51 - 67355074 GGGTTTC-CCAGGTTCCT--------------AGTGCCGCACGGGTGTGAACTGTCTTCTGACAGG s danRer1.chr7 2363162 66 + 45413732 GTGTATCACCAGCGTCCTCAAAGTGTAGCTAAAGCAGTGTGTGTGTATCAACTGAGTCCCCAAAGG a score=26605.0 s hg17.chr7_random 448265 281 + 778964 GGGTTTCCCAGGTTCCTAGTGGGAGTGTTTTGTTGACACGTGAAGTCTGTGTGATAAATAACACAGGGCCCTGGGAGTCAGAGATTGCTAAAGCCTCGTGGAAGAGCTCTGTAAGGCATCATGTGTTTCGGGGTCCTTTCCGAGGAACATGGAACTCGTATGAATTTTCAGGCTGGCTTTGTCAGTCAACATGGATCATGCTTCCTCCATGGCACACGTCCCTATAGGCATGCTACATGCACAGCCTGGTTTGCCCCTTGCAATCACCCCTCATGGCAGGT s panTro1.chr6_random 280072 281 - 67355074 GGGTTTCCCAGGTTCCTAGTGGGAGTGTTTTGTTGACACGTGAAGTCTGTGTGATAAATAACACAGGGCCCTGGGAGTCAAAGATTGCTAAAGCCTCGTGGAAGAGCTCTGTAAGGCATCATGTGTTTCGGGGTCCTCTCCGAGGAACATGGAACTCGTATGAATTTTCAGGCTGGCTTTGTCAGTCAACATGGATCATGCTTCCTCCATGGCACACGTCCCTATAGGCATGCTACATGCACAGCCTGGTTTGCCCCTTGCAATCACCCCTCATGGCAGGT a score=27624.0 s hg17.chr7_random 448546 157 + 778964 CCCTGCGGACTTGAGGGCCAGAGGCCCCTAGGAGCCTGGCTGTATGCTGGGTCCTGTCTGGGTGCCTGTAG-GAGGCAGAGACAGGGCAGAGTAGATTTGGCACCTGCTCTTGAGCAGCCCCCAAATTCCAGACCTGAAGGAGTTTCAGCACCAAAGC--- s panTro1.chr6_random 280353 157 - 67355074 CCCTGCGGACTTGAGGGCCAGAGGCCCCTAGGAGCCTGGCTGTATGCTGGGTCCTGTCTGGGTGCCTGTAG-GAGGCAGAGACAGGGCAGAGTAGATTTGGCACCTGCTCTTGAGCAGCCCCCAAATTCCAGACCTGAGGGAGTTTCAGCACCAAAGC--- s canFam1.chrUn 89205209 153 - 91062872 CCCTGCAGACTTCAGGGCT----GCC----AGAGCTTGGCCCTATGCTCTGTCCCAGGTGGGGTGCTATGGAGAGTCAGGAGCAGGGCAGTGGAGCTTTGGCTCCTGCCCTTGAGAAGCCCTCAAATTCCACACCTGGGATAGTTTCAGCACCAAAAAGGG a score=9091.0 s hg17.chr7_random 448703 952 + 778964 AGGAACCCGGGGAAGCTTCCAGAAGGCAGCAGGGCTTGAATGGCTTGGACTAGCCTCTGTGCCTCTGAGCTTCCTGGTCCAGAGAGGTGATGATGCTTAGGACTGTTTTGCTGCACAGAAGAAGCTGAGTCAGGGCTCTCGGTGGCCGGTGAGCCAGGGGTGCTCCAGGATGAGTCCCGCAGGCATCCGCcagcacgggcagggagggaggcagcagctttgcctcagacgcctctgggctcggtcccagcct-gctgcctgctggccacgtgaccttggcaaatgacgtgacgtctctgagcTGcctgtgggccacgtgacctttgcaaatgacatgacctctctgagcttcagGCCTGTTCCCTCTGTCCTTGAAGTTGGCGCAGTCAAAGGCAGAAAAGGGGCTGTCCCCAGGCAGAGCCCCCACCCACCGCCATTGCGCCTCCATTCCACAGGTG-CCCCACGCTGTTCGGGTGGCAATGGCGGGACGTGTGCAGGGGCGGGAGGCTGTGCCAGAAGTGCACCAGGCAGGCAGTGGGTGA-----GGGCACCAGAGCCAGGAATGACTCCCAGAGG----AGGGGGTGTTTGCAGCCCAGAGCTGGA---------GGTTCGGAGGTGCAG--CCGGTGTGAAGGCTGGAGGGCTGGAAAGAGCCTTTCGTGGTTGGAACTGAT------CAGGTGGAGTGAGCAGGGAGGGAGGGAGGGGCTGAGTTGGGG-TGGCAGTGGCTCTGGGGGCTGTGGTTTTCCAGCAGGGCACACAGACCCTTGGGATGCAGACCCTCTAGGGTCC-CTCAGA--CAGGGTCCACAGTCCCAG-------GTCTGCATTC------------TCAGAACTGCCATTGAGGCCACCTGTCCTCTTCATCAGAGAAGGCACA---CTCACTCACACACCTG------------------GGTCCTGCCTGCACAGATTGC--------------------AGTCACCTCACAACGGCATGGCCAGATGCTTCTTATAAACAAGGCACTACAg s canFam1.chrUn 89205362 836 - 91062872 AGGAGCCCAGAGAAGCTTCCAGAAGG----------TGGAGGGCTTAGAATACCCTCTG-----------------------AGAGGTGGCAGTGCTAGAGACTGTTTTGTTAGTAAGAGGAggcggagtcagg-----------caggggagccagaggtg-tccagagtgag-cctgttgg--------------------------------------------gatgaccttgggcttggacctggccttgcgatttgctggcagtgtgaccttggcaaatgatgtaac-----------------------------------------------ctctgtgagcttcagaaatgaatcctctgtctttgaa--------------------agcaggagcttgCTCC-----------CTGTTCACT-------TGCTTCC---CGGCATGTGATTCTGCATTGTTC---TAGGATAGGGGGGATGTTCT-----GTGGGAAA-TGTACCAGAAGTGGGC------GGCTGAGGGTCTTTGCTGGACACAGCAGCTAGGGAGGGCCTCTTGGGGGGCCAGGGAATATTTCAACCTAAGACCTGGAAAGTATGAGGATCCGGAGGTTCATTTCTGGTCTGAAGGCCTGGG--------ATAGCCTGG-GTGGTCAGAGGTAACTCGGCACAAGGGAGGGGTCCTGTGGAGGCAGGAGAGGGTGATCCAGATCTTGCATT---TCTGCGGGCTGTAGTCTCCCAG-AGGGCATGCAGACTCT-GGTGTGCAAGCCCTCCAGGGGCCATTCAGGGTCAGAGTCCTTGGTTTCAGCTTACGGATTTACATTTGAGATGGAGCAGCCAGAGATGTGTTTGTAGTCAC-GGTCACCTTTCTCTGACCTTTCCCAGGATTTACTCTTAAAATTGACCTTCTGTGTGAGAGGGGGTCTTATCTGTGTGGGTTGTCTTGAGATGCATAAGCCTTAGGCCACCAAACATCAGGACAATGAGACTCTATTTTTAAATAAAGCACTATAA a score=34663.0 s hg17.chr7_random 449831 390 + 778964 tgaggcaggaggatcacgtgaacATAGCCTGGGCAGCATAGCAAGACCTCAAGCTCTACAAAAAAACAGAAAATTagccaggtgtggtggtgcttgcctgtggtcccagctactcaggaagctgagatggggggatcgcttcagtccaggactttgagagcagcctgggcaacatagcaagacactaatctctgcaaagaacaaaaaattagccaggcctggtggctcatgcagctattcaggaggctgagatgggaggatcgcttgggtctgggagttggaggctgcagtgacccagggtcgtcactgcaatccagcctggacaacagagcaagaccctgtctcaaaaaataaaaataaataaataaataaataaataaGGCGCTACAT s panTro1.chr6_random 281580 382 - 67355074 TGAGGCAGGAGGATCGCGTGAACATAGCCTGGGCAGCAAGGCAAGACCTCAAGCTCTACAAAAAAACAGAAAATTagccaggtgtggtggtgcttgcctgtggtcccagctactcaggaagctgagatggggggatcgcttcagtccaggactttgagagcagcccaggcaacatagcaagacactaatctctgcaaagaacaaaaaattagccaggcctggtggctcatgcagctattcaggaggctgagatgggaggatcgcttgggtctgggagttggaggctgcagggacccagggttgtcactgcaatccagcctggacaacagagcaagaccctgtctcaaaaaataa--------aaataaataaataaaTAAGGCACTACAT a score=546.0 s hg17.chr7_random 450221 2 + 778964 AT s panTro1.chr6_random 281962 2 - 67355074 AT s canFam1.chrUn 89206484 2 - 91062872 at a score=17061.0 s hg17.chr7_random 450223 81 + 778964 AAATCAGTGTAAATATAAAACAcactaaatgatgtatttcgaaa------atagc-tttacttcttcaattgaataattacttaccaa s panTro1.chr6_random 281964 81 - 67355074 AAATCAGTGTAAATATAAAACAcactaaatgatgtatttcgaaa------atagt-tttacttcttcaattgaataattacttaccaa s mm5.chr5 12722216 88 - 149219885 AAATCAACGTAAAGATATGCATTGCCATTTAGTATGTTTCCAAACAGTTGACAGTATATGCTTTTTAAATCTAATAATTATTTATCTA s canFam1.chrUn 89206486 72 - 91062872 aaatcattaaaaaaa------actctaaatgatataattccaaa------ataat-cataatatttcaatttaataat---ttatcaa a score=546.0 s hg17.chr7_random 450304 2 + 778964 aa s panTro1.chr6_random 282045 2 - 67355074 aa s canFam1.chrUn 89206558 2 - 91062872 aa a score=3815.0 s hg17.chr7_random 450306 18 + 778964 atgttaatgtataaacgt s panTro1.chr6_random 282047 18 - 67355074 atgttaatgtataaacgt s mm5.chr5 12722475 18 - 149219885 ATTTCAGCATATTCTCTT s canFam1.chrUn 89206560 18 - 91062872 atgttaatgtaaaaaaat a score=29091.0 s hg17.chr7_random 450324 243 + 778964 ttagttaact--------gtctgctaacactaaaaagaa---------atcctgaagaaaaatatgatgcttataaccttgtgttcacagggaaaataattccaaacattcaacgcgtcttttacaaggaagcatga-tagggagatcaaaaaatattaagatacgttttaaattaaaacatttttacattgggataaattctgtgggaaatgggctagaaatactcattcgaggagaaaaggagcagtggaaacattcta s panTro1.chr6_random 282065 243 - 67355074 ttagttaact--------gtctgctaacactaaaaagaa---------atcctgaagaaaaatataatgcttataaccttgtgttcacagggaaaataattccaaacattcaacgcgtcttttacaaggaagcatga-tagggagatcaaaaaatattaagatacgttttaaattaaaacatttttacgttgggataaattctgtgggaaatgggctagaaatactcattggaggagaaaaggagcagtggaaacattcta s mm5.chr5 12722493 184 - 149219885 TTTGTTGATT--------GTGGGCTAGTGCCTTAAA-AA---------GTCT----GAAAATTTTTAATCTGAGAGGTTTCTGTTACTAGGA-----------GAACATTCTGAGATTCCTTTACAGGGAAAAATGAGCGAGAAGATCA---------------------------------TTTTACATGAGGATGCGCTGTGT----ATTGGG--GGCGGTGGTGGTT-----AGAAAGGAAGCTGTGTACAAGCCCCA s canFam1.chrUn 89206774 210 - 91062872 TTAATGTATTTATGTTTAGTCAGCCAATATTTAAAAAAAAAAAACACTATCttaaagaaaa----------tatag-------------gggaaaaaaactccaaaatttcagtgtatcttttacggagaagcatgg-tagggtgatgga-------taagaca------aagcataaatgttctcacgtcagggtaaattctgt-------ggg--agaagt-----TCAAGGGGGAGAAGGAGCCACTTAAACATTCCA a score=1757.0 s hg17.chr7_random 450567 16 + 778964 aatgttaaaAGCTTTT s panTro1.chr6_random 282308 16 - 67355074 aatgttaaaagctttt s canFam1.chrUn 89206984 16 - 91062872 ACTCAGAGGGGTTTTT a score=35828.0 s hg17.chr7_random 450583 386 + 778964 AAAtttttatttatttatttattttgagacggagtctcactctgtcacccaggctggagtgcagtggcacgatctcagctcactgcaacctccacctcccagattcaaatgatgctcctgcctcagcctcccgagtagctgagattacaggtacccgccaccatgccaggctaatttttgtatttttagcagagaccaggttttaccaggttggctaggctggccttgaacccctgacctcaggcgatccacctgcctcggcctcccaaagtgctgggattacaggtgtgagccaccgtgcctggccAAATGTTAAAAGTTCTTAAATTTTCTCCGTGATATCTTGTTTTGGTGAGTGTCCAATCCCTATGGGTTTATATttcatt s panTro1.chr6_random 282324 386 - 67355074 aaatttttatttatttatttattttgagatggagtctcactctatcacccaggctggagtgcagtggcacgatctcagctcactgcaacctccacctcccagattcaaatgatgctcctgcctcagcctcccgagtagctgagattacaggtacccgccaccatgccaggctaatttttgtatttttagcagagaccaggttttaccatcttggctaggctggccttgaacccctgacctcaggcgatccacctgcctcggcctcccaaagtgctgggattacaggtgtgagccaccgtgcctggccaaatgttaaaagtttttaaattttctccatgatatcttgttttggtgagtgtccaatccctatgggtttatatttcatt a score=24651.0 s hg17.chr7_random 451137 305 + 778964 atttttttgtttgtttgtttttttgagacggagtctcactctgttgtc---caggctggagtgcggtggcgtgatctcggctcactgcaacctccgcctcctgggttcaagtgattctcccgcctcagcctcctgactagctgggattacgggcacgcaccaccatgcccagctaatttttgtatttttgtagagatggagttttgccatgttggccaggctggtctcaaactcctgacctcaggtgatctgcctgcctcagcctcccacagtgctgggatgacagacgtgagccaccatgccctgcc s panTro1.chr6_random 282711 305 - 67355074 atttatttatttatttattttttc-agatggagtcttactct--tgtcacccaggctggagtgcaatggtgcagtcttagctcactgcaacctccgccttctgggttcaagtgattctcccgcctcagcctcctgagtagctgggattacgggcacgcaccaccatgcccagccaatttttgtatttttgtagagatggagttttgccatgttggccaggctggtctcaaactcctgacctcaggtgatctgcctgcctcagcctcacacagtgctgggatgacagacgtgagccaccatgcccggcc a score=5561.0 s hg17.chr7_random 451442 41 + 778964 tatgggtttatatttcattggctatgtttaaaagagagaag s panTro1.chr6_random 283016 41 - 67355074 tatgggtttatatttcattggctatgtttaaaagagagaag s rn3.chr12 16076891 41 + 46649226 TACAGACTCAGGTTTCCTGTGCTTTGTGCAATAGAGCCATG a score=35424.0 s hg17.chr7_random 451483 124 + 778964 ggcagttaaaataccaactttcacaataggccagaaattactcctttttgcaactacctaaacttgtaatgaaacattatagatgctaacttaaaaacaagtgaagaggtacgtagtttAAGAt s panTro1.chr6_random 283057 124 - 67355074 ggcagttaaaataccaactttcacaataggccagaaattactcctttttgcaactacctaaacttgtaatgaaacattatagatgctaacttaaaaacaagtgaagaggtacgtagtttAAGAt s mm5.chr5 12722764 111 - 149219885 GGTAGTTAAAATGTCAGTTTACA----AGTCTGTGAATTATTTCTCTTTGT---------AGCTTGTAATAGGGTGTTTGAGATGGTCTCTTAAAAGCATGTGAGGGAGCATAGAGTTTAAGAA s rn3.chr12 16076933 111 + 46649226 GGTAGCTAAAATGTCAGTGTACA----AGTCTGGGAATTATTTCTCTTTGT---------AGCTTGTAATTGGGCGTTTTAGATGCTATCTTAAAAGCATGTGAGGGAACATAGAGTCTAAGAA a score=59300.0 s hg17.chr7_random 451607 657 + 778964 ttttttttttttaattttggaggtagagtctcgatatgtggcccaggctggagttcagtggtgtgatcatagctcactgcagcctcaacctcccagcctcaagcaatcctcccacctcagcctcccaagtacctgggaccacaggtgcgcaccaccacacccggctaatttttaaattttttgtagagctggggtcttgatgtgttgctcgagctggtcgcaaacttctggcctcaagcagcgtctcaaagcaccggattacaggtgtgagccaccatgcccggccATAATGAAGCATTTTAGGTGCTAACTGAAAAACAACATGCGAGGAGGttttttttttttttttttttttttttggagacgaagtctcgttgttgcccaggctggagtgcagtggtgcgatctcggctcactgcaggctctgcccccccaggttcatgccattctcctgcctcagcctcctgagtagctgggactacaggcgcctgccacctcgcccggctaattttttgtatttttagtagagacggggtttcactgtgttagccaggatggtctcgatctcctgaccttgtgatccacttgtctcggccccccaaagtgctgggattacaggcatgagccaccgcgcctggccTGGAGGTACGTGTTTTA s panTro1.chr6_random 283181 647 - 67355074 ttttttttttttaattttggagatagagtctcgatatgtggcccaggctggagttcagtggtgtgatcatagctcactgcagcctcaacctcccagcctcaagcaatcctcccacctcagcctcccaagtacctgggaccacaggtgcgcaccaccacacccggctaatttttaaattttttgtagagctggggtctcgatgtgttgctcgagctggtagcaaacttctggcctcaagcggcgtctcaaagcaccggattacaggtgtgagccaccatgcccggccATAATGAAGCATTTTAGGTGCTAACTGAAAAACAACATGCGAGGAGGtttttttttttttttt----------ggagacgaagtctcgctgttgcccaggctggagtgcagtggtgcgatctcggctcactgcaggctctgcccccacaggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccacctcgcccggctaattttttgtatttttagtagagacggggtttcactgtgttagccaggatggtctcgatctcctgaccttgtgatccactcgtctcggccccccaaaatgctgggattacaggtgtgagccactgtgcctggccTGGAGGTACGTGTTTTA a score=584.0 s hg17.chr7_random 452264 3 + 778964 AGA s panTro1.chr6_random 283828 3 - 67355074 AAA s mm5.chr5 12723110 3 - 149219885 AGA a score=3004.0 s hg17.chr7_random 452267 7 + 778964 AAACTCT s panTro1.chr6_random 283831 7 - 67355074 AAACTCT s mm5.chr5 12723113 7 - 149219885 AAATTTT s rn3.chr12 16077214 7 + 46649226 AAATTCT a score=783.0 s hg17.chr7_random 452274 235 + 778964 TTGGATAGCA-AATGGGTGGTTATT------CATGGTTATGGG--------------------ATTAAAGACCGGACGGAGTGGGAGCTGCTG--GGGGgtgttgggatcatagagggggcatggat-gggagaggacgagg-agg---------------ctacggggcagcaggagaggccaggagagttgtcccagcca-caggtgatgctggcttgggt-gggctggagac-gggacagtggacagactgggtgatggcccttggt--tagaccaacgggtt s panTro1.chr6_random 283838 234 - 67355074 TTGGGTAGCA-AATGGGTGGTTATT------CATGGTTATGGG--------------------ATTAAAGACCGGACGGAGTGGGAGCTGCT---GGGGGTGTTGGGATCATAAAGGGGGCATGGAT-GGGAGAGGACGAGG-AGG---------------CTACCGGGCACCAGGAGAGGCCAGGAGAGTTGTCCCACCCA-CCAGTGATGCTGGCTTGGGTGGGGCTG--GACTGGGACAGTGGACAGACTGGGTGACCGCCCCTCGG--TAAACCAACGGGTT s mm5.chr5 12723120 210 - 149219885 GTGGGTATC--TGTGGGAG------------CAGGATTGTGGGTAACAGGT------------ATTAATGATTGT-CACCATGGGAGTCATC---AGGGACCT--GGATCATAGA--AGACACAGAT-GAAGGAGGGATGGG-ACA---------------GGACAGGACAGGACAGGAGGCCATGGGGGACATGGGAGCTAGCAGGCTAGTCTTGCTTCAGT-GGGTTG-AGTC-AGGATGGTTTATAAACTGACTGAC----------------------AGTT s rn3.chr12 16077221 221 + 46649226 GTGGGTATC--CGTGGGTGCTTTTCCTAGAGCGGGATTGTGGGTAGCAGGTATAAAGGGAGAGATTAATGATAGT-CACTGTGGGAGTCATCA--AGGGGCCT--GGATCATAGA--AGATAGAGATGGAGGAGGGGTGAGACAGG---------------ACACAAGAC----CATGGGGACATGGGATAC-----------CAGGCTAGTCCTGCTTCAGT-GGGTTC-AGTC-AGGATGGTTTATAAGCT-AGTGAC----------------------AGTT s canFam1.chrUn 89207419 233 - 91062872 -TCTGTCACACGATGGGTTTATAGT------CATGGCTGT-----------------------ATTTAAGGAGGGACACAGCTGGTGatgtttgcagcaggccagaaatcatgcactgtgcaacttt-gtgaacatacaatg-aagcattttggatgttaacttaggaacatctgaagggtatgtggttaagaacactcctt-taggTA-----GACTCTGTT-GGCATC-AG---AGGAC----------TTGAGTGGTAGGTCATGGGTCTGAAGTGAGGGATT a score=0.0 s hg17.chr7_random 452509 5 + 778964 ttgct a score=2292.0 s hg17.chr7_random 452509 4 + 778964 ttgc s panTro1.chr6_random 284072 4 - 67355074 TTGC s mm5.chr5 12723330 4 - 149219885 TTGC s rn3.chr12 16077442 4 + 46649226 TTGC a score=273.0 s hg17.chr7_random 452513 1 + 778964 t s mm5.chr5 12723334 1 - 149219885 T s rn3.chr12 16077446 1 + 46649226 T a score=2984.0 s hg17.chr7_random 452514 200 + 778964 gaggacctgacatgggagggtgagaacgggagtgaggaaggctgatccgcaggttGGGGGTTGCTGGTGCCCCCAACCC-------CGGAGGAG-GTGGGCAGGCAGGCTGGTTTTGGCCACAAGAGTTTGGGCGCCCTGTAGGACGT----------GGGAGAGAGGGGACAGGT---------GGTCGGCTGTGTGGCTC--------TGGCCGG-----CCATGTTGCGTCCCATGC-- s mm5.chr5 12723335 195 - 149219885 G-------------------CTAGGGCGGTGTTGACAGAGCCTGA------GGCTTGAG-TCACAGCAGCCTCTAGCATAGAGATGTGGGGGAGAGGGGGCAGGCAGACAGGTTTTGGCCACACAAACCTGGATGTGCTGCTGGACAC----------TGGAGAGAGGAGCTGGGT---------AGTCAGGTGTGTGGCCCCAGATGAGTGACTGGCTACACCAGGTTTCTCTCATTGT-- s rn3.chr12 16077447 174 + 46649226 G-------------------GTAGGGCGGTGTTGACAGAGCCTGA------GGCTTGAG-TCACAGCAGCCTC-AGCAT-------AGAGGTGG-GGAAGAAGGCAAACAGGTTTTATCCACACAAACCTGGATGT--TGTTGGACAC----------TCGAGAGAGGTGCTGGGTAGTCTAGTCAGTCAGGTGTGTGGCCCTGGATGAGTGACTGG-----CTAC---------------- s canFam1.chrUn 89207652 187 - 91062872 GGGGATCTAGTGT-------GTGTGCTGGGGGCCACAGATCCAGA------GGCCAGG--CTGC----------------------AGGGGGCA-GTGGACAGACTGGGTGACTATGTCAGTTTGGGCCAGCATGT--AGATGGATGTGATGGATGGATGGAGGGAGGGAGAGGGTGGTGGGTTTGAGCAGCTGCTGGACCC--------TGGAGGG-------AGGTCTCAGGTGCTGTGG a score=117127.0 s hg17.chr7_random 452714 623 + 778964 CCCTTTCT-------TCCCCACCTCTGGGTGGCCCCTTTGGTGTTTCACTTTTGTGGAAGCTGAGCAGCCTGGGCCAGGAGT-----GGGGGGCAGTGTCACCCCTGCCAGGGCCCCCGGCTCCCTGCCAGGTGTA-CCGCTGCCGCCCTCAGCCCAGGGCCCTTCGCCTGTGATCCTGCCGGGT-GTGAGCTCAGCTAATGGCCTTTTTGGATTTGGACCCTCTTCCTGTTATGATCGGGCGGATGGCCAATTTAAGCATTTAAATCTTGGTTTTAATTTAGTTTGGTTAACATGGCTTAGTCTTAATTACCTGTGCAGTAGCGGCC-CCGTCGTAGGATGCTGAG---------CACTCTGAGCCATT------TCATCATCGTGTGATTTCATGCATCTCATTGTGAGTTCA--GGG---GTTCAGAGGGAGAAGCGTGAAGCCATTTCTAAGTGATGTT-TTTATGGGAAACAAGGTTTAATTGTGTGGAAATAGCCATGATTCTGCAC----GCAGCCCCATT---AGGAAACGAGCTCCGC-------TCTTCTTTCAGTTACTCCAGAGCTGTCATTAGCTCGGGGCCA--AGAAGAAGGAGGAACCA--TTTTCTGTGTCTT-CCTGCCCCACCATCGAGCTGCTT-GGCACTTGGAATTGCAGAAGCAGA s panTro1.chr6_random 284267 622 - 67355074 CCCTTTCT-------TCCC-ACCTCTGGGTGGCCCCTTTGGTCTTTCACTTTTGTGGAAGCCGAGCACCCTGGGCCAGGAGT-----GGGGGGCAATGTCACCCCTGCCAGGGCCCCCGGCTCCCCGCCGGGTGTA-CCGCTGCCGCCCTCAGCCCAGGGCCCTTCGCCTCTGATCCTGCCCGGT-GTGAGCTCAGCTAATGGCCTTTTTGGATTTGGACCCTCTTCCTGTTATGATCAGGCGGATGGCCAATTTAAGCATTTAAATCTTGGTTTTAATTTAGTTTGGTTAACATGGCTTAGTCTTAATTACCTGTGCAGTAACAGCC-CCGTCGTAGGATGCTGAG---------CACTCTGAGCCATT------TCCTCATCGTGTGACTTTATGCATCTCATTGTGAGTTCA--GGG---GTTCGGAGGGAGGAGCGTGAAGCCGTTTCTAAGTGATGTT-TTTATGGGAAACAAGGTTTAATTGTGTGGAAATAGCCATGATTCTGCAC----GCAGCCCCATT---AGGAAAAGAGCTCCGC-------TCTTCTTTCAGTAACTCCAGAGCTGTCATTAGCTCGGGTCCA--AGAAGAAGGAGGAAACA--TTTTCTGTGTCTT-CCTGCCCCACCATCGAGCTGCTT-GGCACTTGGAATTGCAGAAGCAGA s mm5.chr5 12723531 531 - 149219885 CCAGTTGT-------GTGC-ATCCCTG---GTCTCCTGTTGTGCTTCAAACCTTTGGAGAC-------------------------------ACAGAGGCACCCCGCTGAGCATGC---GCTGCCCTCCAGACACA-CTGCCACCTCACT---------GCCTTGC---------CCTGCCTGT-----------GCTAATGACCT-------CAGGGGCCAACTTTCTTCCAC-------------ACCGATCCA-------AAGCCTTCGTTCTAATTTACTTTGCTTAGCATGATTCGGTTTTAATTACCTATGTGGTAATGGCCGCAGTC--AGGGTTTTGAATCAAAGTGTCTCTCTGAGCAGTT------TCCTCCCTGAGAAGTTTTG-GTGGCCCGTGGTAAGCCT---------GTACAACAGAAGACAC---------TTCCAAAGTGACACT-TTCATGGAGATCAAGGTTTAATTGTGTGGAAATGATGGTGAGCTGGCAAAATGGCAGGCTCACTCA-AGGAACGTGGCCATGCTTCCTTTTCTCTTTGCAGTAATTTTATAGCCACCATTAGCATGAGTCCA--CAAGGACGGTGA---------CTCAGTGTCCTGCCTG--CCACC-TTGAACCACTC-GCTACT--GGACTGGAGGGACAAA s rn3.chr12 16077621 558 + 46649226 CCGTTTCTTTCACTGTTCC-AGATTTG---TGCATCTTTGGT------CTCCTGT---------------TGTGCCTCAAGTCTTTAGAGAGACAGAGGCACCCTGCTGAGCACAC---GCTGCCCTCCAAACACATTTACCACCTCACTG---------CCTTGC---------CCAGCCTGT-----------GCTAATGACCT-------CAGGGGCCAATTTTCTTCCCG------------CTCTGATCCA-------AATCCTTAGTTCTAATTTATTTTGCTTAGCATGGTTCGGTCTTAATTACCTGGGTGGTAGTGACCACAGCC--AGGGT-TTGAATCGAAGTGTCTCTCTGCCCAGTT------TCTTCCCCGAGAAGTTTTA-GTGGCCTGTGGCGAGCTCACCAGGTCTGTACAACAGAAGACAC---------TTCCGAAGTGGCACTGCCTACGGAAATCAAGGTTTAAT--TGTGGAAATGACGGTGAGCTGGCAAAGTGGCTGGCTCACTCAGGGGACGCCGGCCATGCTTCCTTTTCTCTTTGCAGTAATTTTATAGCCTCCATTAACATGGATCCA--CAAGGAAGGCAA---------CTCACTCTCCCGTCTA---TACC-TTGAACTACTC-GCTACT-GGACTTGTGGGACAAGA s canFam1.chrUn 89207845 582 - 91062872 -----------ACC-TCTC-ATCTCTG---CCTCTCTTTGGTCTTTCCCTGTTAGGGAAGCTGGGCCACCTGGCTGGGGCAT----------GCAGGCTCCGGTCTGCCAGACCATCCCGCT-CCCACCAGGCATG----CCATCCCACT-------------------------CCTGTGCGATGGTGAGCTTAGCTAATGGACCTTTTGGATTTGAACCCCCTT-CACTTACAATCAGGCCAGTAGCCAATTTAAGCATTTAAGTCTTGGTTTTAATTTAGTTTGTTTAACATGGCTTGTTCTTAATTACCTGGGCTGTGACGGC--CCGTC-----GTTCAGAG-CTAAGCGTCTCTTGGAGCAATTAACAGGTAATC-------AATTTTATGTGGCTCGTTGTGAGTTCA--GGG---GTCCAGGCCGAGAACA---GGGCCACTTCCAAGGGATGCT-TTTGCAGAGAACAAGGTTTAATTGTGTGGAAATAATGATGATTCTGCAA----GCAGCTCTATTTG-GGGA---GTGCTTTGC------TGTTCTTTTTAGTAATTTTATGGCTGTTGTTAGCTAGAGCCTAGCCTAGGAAGGAAGCAATGGTGTTCTCCTGTCCT-CTCGGCCCGCCGTGGCACCAGTCAAGCTCTTGGGTTTGCA-AACCGGA a score=9130.0 s hg17.chr7_random 453337 48 + 778964 AAAGTTCATGAAT-TTGGATTTCCCCAGGTTTAGAATTTATGCACCGTC s panTro1.chr6_random 284889 48 - 67355074 AAAGTTCATGAAT-TTGGGTTTCCCCAGATTTAGAATTTATGCACCGTC s mm5.chr5 12724062 46 - 149219885 GGTCCTCATTCCT-TTG--CTTCTCTGGATGGGAGACTCACACCCCACC s canFam1.chrUn 89208427 49 - 91062872 AAAGTTCACAAATATTAGACTTCCCCAGTTTGGGAATTTAGGCACCAAC a score=5485.0 s hg17.chr7_random 453385 34 + 778964 CTTCTAGAATCACTGAAATTGTTCTCTTAAAACG s panTro1.chr6_random 284937 34 - 67355074 CTTCTAGAATCACTGAAATTGTTCTCTTAAAATG s canFam1.chrUn 89208476 33 - 91062872 CATCCAGAAACACC-AAACTCTTCTCTTAAAAAT a score=92835.0 s hg17.chr7_random 453419 989 + 778964 TAGCACTCAggccaggcgcggtggctcacgcctgtaatcccagcactttgggagaccaaggcgggaggatcgcttgaatccaggagtttgagaccagcctggggaacataggaagaccctgtctctacagtagattcaaaaatcagctgagcatggtggtgcacctgtggtcccagctacttgggaggccgaggtaggaggattgcttgagcccaggaggttgaggtttcagtgagctatgattgcaccactgcacttcaacctgggaggcagagcaagactctgcctctt-aaaaaaaaaaaTAGCGTGCAGTTGGGGTTACTGAGCAACATGTTGGTGACGAAGGAGCCGGAATCTCAGCTGTGGGCCTCGTGGGGTCAGGTGCACACTTGGACTTTGCTGTCAGCTCCTGCCCTTTCCGGGTACCCTGGCATCACTGCTCTGAAAACAGGGACCAGATCGGGGCTGGGCCACAGAGCCCCAGAGGGGTCTGACTGGCGAGTGGACGGCAACCTGCCTGTACTCCCTGGGGCTCAGGGAGCACCCCCGCATGCTGACCTCACGGTCCCCTCCCAGTAGACGCACATCCGGGATCCCAGGGTCCCCTGGGAGCCCCAGGCCTCTCCCCAGGGCACTGGAACACAGGCCTGGAGGCTGGAGGGCTTGGAACTCGTCTCACTGCCTCCCAGGCCCTCCCAGACTTTATTCCCTGAACAGCTTCAGAGAAACAGCCTGTCCGTGACGGCTGTGGGACTGGCTTTGagtcttgacctcccaggcttgagtgatcctcccatcttagcctcctgagtagctgggaccacaggggctcgccatcacacccggctaattatttttatttttagtagagacagggtcttgctatgttgcttgggctggtcttgaacccctgggctcaagcaatcctcctgcctcggcctcccaaagtgctgggattacaggcttgagccactgcgcccAAGTAGACT s panTro1.chr6_random 284971 990 - 67355074 CAGCACTCAggccaggcgcggtggctcacgcctgtaatcccagcactttgggagaccaaggcgggaggatcgcttgaatccaggagtttgagaccagcctggggaacataggaagaccctgtctctacagtagattcaaaaatcagctgagcatggtggtgcacctgtggtcccagctacttgggaggccgaggtaggaggattgcttgagcccaggtggttgaggtttcagtgagctatgattgcacctctgcacttcagcctgggaggcagagcaagactctgcctcttaaaaaaaaaaaaTAACGTGCAGTTGGGGTTACCGAGCAACGTGTTGGTGACGAAGGAGCCGGAATCTCAGCTGTGGGCCTCGTGGGGTCAGGTGCACACTTGGACTTTGCTGTCAGCTCCTGCCCTTTCCGGGTACCCTGGCATCGCTGCTCTGAAAACAGGGACCAGATCAGGGCTGGGCCACAGAGCCCCAGAGGGGTCTGACTGGCGAGTGGACGGCAACCTGCCTGTACTCCCTGGGGCTCAGGGAGCACCCCCGCATGCCGACCTCACGGTCCCCTCCCAGTAGACGCACATCCGGGATCCCAGGGTCCCCTGAGAGCCCCAGGCCTCTCCCCAGGGCACTGGAACACAGGCCTGGAGGCTGGAGGGCTTGGAACTCGTGTCACTGCCTCCCAGGCCCTCCCAGACTTTATTCCCTGAACAGCTTCAGAGAAACAGCCTGTCCGTGACGGCTGTGGGACTGGCTTTGagtcttgacctcccaggcttgagtgatcctcccatcttagcctcctgagtagctgggaccacaggggctcgccatcacacccggctaattatttttatttttagtagagacagggtcttgctatgttgcttgggctggtcttgaacccctgggctcaagcagtcctcctgcctcggcctcccaaagtgctgggattacaggcttgagccactgcgcccAAGTAGACT a score=986.0 s hg17.chr7_random 454408 8 + 778964 GAGTGAGA s panTro1.chr6_random 285961 8 - 67355074 GAGTGAGA s rn3.chr12 16079745 8 + 46649226 GTCTTAGA a score=7452.0 s hg17.chr7_random 454416 147 + 778964 TTGATCTTTCTTCTAAGAAATCTGCATAGGTGAGATCTTA---------GAAGCATTGCAGCCTGGCTCAGA--AACACCTGGGTCTCGCCTGTACCT----GGATCCCTCCTGCC---GCGTCTTCGGCTCTCTCTGCTCCTTTCTGtaggagggagaggaccg s panTro1.chr6_random 285969 147 - 67355074 TTGATCTTTCTTCTAAGAAATCTGCATAGGTGAGATCTTA---------GAAGCATTGCCTTCTGGCTCAGA--AACACCTGGGTCTCACCTGTATCT----GGATCCCTCCTGCC---GCGTCTTCGGCTCTCTCTGCTCCTTTCTGTAGGAGGGAGAGGACCG s rn3.chr12 16079753 156 + 46649226 TCTAAATTTCTTCCAA-ACGTTTCCATGGCTGAGTTCTTGAAGATAGGTAAGGGACCTCAGGCTGGTTTAAATCCCCACCT-----TCCCCCGCACCTTCCCATTCCCCTCTCGCCC-TGTGGCTTTGTATTTCTC--CTAGTGTGTGGAGAATGTGGAATTCTG s canFam1.chrUn 89208898 100 - 91062872 TTCCTCTGGCCCCAGAGAGGCCTGACTAGAAGAG---------------ACAGCATTGCATT----TCCAGG--ATGAACTAG-------------------AGATCTCTCTAACCCGTGTGCCCTC-------------------------AGAGGGAGGCCTG a score=0.0 s hg17.chr7_random 454563 31 + 778964 gacttgggtgctgcaggccgggttctcatgc a score=1422.0 s hg17.chr7_random 454563 28 + 778964 gacttgggtgctgcaggccgggttctca s panTro1.chr6_random 286116 28 - 67355074 GACTTGGGCGCTGCAGGCCGGGTTCTCA s rn3.chr12 16079909 19 + 46649226 GCTGAAGGTGTGGCTGGTT--------- a score=1746.0 s hg17.chr7_random 454591 3 + 778964 tgc s panTro1.chr6_random 286144 3 - 67355074 TGC s mm5.chr5 12726182 3 - 149219885 TGC s rn3.chr12 16079928 3 + 46649226 TGC a score=67252.0 s hg17.chr7_random 454594 271 + 778964 tgtgcctgctgcctgccgagtgaccttgggtgggtgctgccctctctggcctcCGCGAGGGGTGTG-AGGGGAGGATGTGG---TGGAGGAGGCATCCCTGCCAGATT---TCTCT--------TCCGGATTTCTAAATCAGGGATCTGCAG----TGAATCACGGGGCCCTTTGCCCTCACTCGTCCACACTGCGCCTTATTTATAGAGGCTGAAGAGACGGCTCATTGCGGAGAAGAGGCTTGTCTTGGGTCACCTTTTCAGGGTCTCACATCTCCCCATCGTGAGAC s panTro1.chr6_random 286147 271 - 67355074 TGTGCCTGCTGCCTGCCGAGTGACCTTGGGTGGGTGCTGCCCTCTCTGGCCTCCGCGGGGGGCGTG-AGGGGAGAATGTGG---TGGAGGAGGCATCCCTGCCAGATT---TCTCT--------TCCGCATTTCTAAATCAGAGATCTGCAG----TGAATCACGGGGCCCTTTGCCGTCACTCGTCCACCCTGCGCCTTATTTATAGAGGCTGAAGAGACGGCTCATTGAGGAGAAGAGGCTTGTCCTGGGTCACCTCTTCAGGGTCTCACATCCCCCCATCGTGAGAC s mm5.chr5 12726185 250 - 149219885 TGTCCCAGCTCCCTGCC-AGAGACCTGGGGCAGG-GCCCCTCTCCCTG--------CAGGAGCATATAGGAGGAGATTTGG-GAGGGAGTAGCTGCCCGGGGGAGGTCACGCCACT--------TTCTCATTCCCAAATTAAAGATGTGTGGTGAATGAATCACGGGGCCTTTAGTCTTTATCCATCCCCA-----CATTATTTATAGAAACTG---------------GAAGACAAGAGGACTGTCTCCAGTCACCTCTACAGGGT-TCATGTCCCCTTGTCCCAAGGC s rn3.chr12 16079931 245 + 46649226 TGTCCCAGCTCCCTGAC-AGTAACCTGGGGCAGG-GCCTCTCTCTCTC--------TGAAGGAATG-TATAGGAGATTTGG-GAGGGAATAGCTGTCTGAGGGAGGTCACACCACT--------TTCTCATTCCCAAATTAAAGATGCGTGA----TGAATCACGAGGCCTTTAGTCTTTATCCATCCCTA-----CGTTATTTATAGAAACCA---------------GAAGACAAGAGGACTGTCTCCAGTCACCTCTACAGGGC-TCACTTCCCCTTGTCCCAAGGC s canFam1.chrUn 89208998 244 - 91062872 TGGGCCTGGAG-ATGCTGAGCGACCATGGGTAGGTGCTGCCCTTCTTTGCCCTC--CAAGATCA---GTGGGGTGATATGGCCATGGAGGGGCT-CCTGAGAGACGTC---TCCCTTGCTCTTGTCTGCATCTCTGAATTAAGGACCTCCAG-----------------------CCTTCGCTGGTACACACTGTACCTCATTTGTAGAGGCTGAGGGGCAGGCTCAGTG-------------TGTCTTCACTCACCCTCATGGGGTCCCCCACCCTGTCCACATGGGGC a score=22905.0 s hg17.chr7_random 454865 132 + 778964 GGGGTGGCCTGGGCGGCCTCTGAGCAGGCCCAGGACTCAGCTCTGCAGCACACGGGACCCTTTGGCC--GACGGCA-CTGCCCGGTCCAGCCTCTTTGGGGCCCGCTTCCCTGGAAGGCTATGGGAGGTGTCTGG---- s panTro1.chr6_random 286418 132 - 67355074 GGGGTGGCCTGGGCGGCCTCTGAGCATGCCCAGGACTCAGCACTGCAGCACACGGGACCCTTTGGCC--GACGGCA-CTGCCCGGTCCAGCCTCTTTGGGGCCCGCTTCCCTGGAAGGCTATGGGAGGTGTCTGG---- s mm5.chr5 12726435 128 - 149219885 AGGAT---TTGTATGGTTCCTCTACAGGTCTCAGGTTCTGTGGTTCATTGGTTGGTGCGTTTCAGCC--AATGGTGTCTGCCTATTCTAGTCTCCTGCTGACCAGCTTTCTGGTAAAG-TGTGGG-GATGTTTGG---- s rn3.chr12 16080176 134 + 46649226 AGGAC---ACGCATAGTTCCTCTCCTGGACTCAGGTTCTGTGGTTCATTGGTTGGTGCACTTCAGCCAAAATGGTGTCTGCCTATTCTAGTCTCCTGCTGACCCGCTTTCTAGTCAAG-TGTGGA-GATGTTTGGCAAG a score=19903.0 s hg17.chr7_random 454997 201 + 778964 GGGAAGGGTCTGGCCCTGGTGCCTGCCCTCTGGGAGGGAGAGCTGGGGTTTGCCCTTTGCTGGGCTGTGGTCCAGCCACCCAGGCCCTGGTGGGTTGAAAGTCTCCCTGTCCGGAGGCCTGGGGGTGGACGCTCAGCTGCTGAGGCTGAGAACGGCCCTGCATTGCTTCCTTCCAGTTGTGGGCACTCGCATGGCCAGACT s panTro1.chr6_random 286550 201 - 67355074 GGGAAGGGTCTGGCCCTGGTGCCTGCCCTCTGAGAGGGAGAGCTGGGGCTTGCCCTTTGCTGGGCTGTGGTCCGGCCACCCAGGCCCTGGTGGGTTGAAAGTCTCCCTGTCCGGGGGCCTGGGGGTGGACGCTCAGCCGCTGAGGCTGAGAACGGCCCTGCATTGCTTCCTTCCGGTGGTGGGCACTCGCCTGGCCAGACT s rn3.chr12 16080310 136 + 46649226 GACAGAGGTCT----------------------GAGGTAAAACTGAGGT--------------------------------AGTTTCTAGTGAGTTGAA---CTCC---TCAGAAGTCCTGA----GGACCCTCTCCTCCTGAGGCTCTGAGTGCAACT-CACAACCCTCCTTCTACGGTGGATGTTCCACTGGCCAAGCT a score=164587.0 s hg17.chr7_random 455198 1819 + 778964 GGTGCCCCCTCAGTGCTGGGAGGGCTCCCTGGCAGCGGGGAGTGGAGGGTGGGCCCTC--GGAGGGATGCTGGACCCCGGGATGGCGTCCGAGTGGGGCTTCCCTCCTGATGCAAGAGCCTGCAGGCAGAGAGGGCTTCCCGTGGAGACCCCCCTCAGCCTCTGCACACCCAAGGAGGAGCAAAACCCCGTTCCGAATGTGCGCGCCTCAGTTTCCCCACCTCATTGTGTACCTCCAGCTCCTCACAGTGTGGGGTGGAGCAGGAGCCGGGAGTGAGTGATTCCAGCAGGATTTTAAGAGCATCACGGACATTTCAACGATGCCTTGAACAGGGGAGTCATTCTATAATATGAGGGTTCATCCTGACGCAGGTTGAACATCCCGCCTGTCGGTGCCCTGTGCTGCCTGCCTGTGTAGGTGAGGGCACAGGAGGGGGTGCATGTGGCCCGTGACTTAGCACCTCTGTTTGTCTGCAAGATGAAGACTTAGGGCTTAGTGTAGTGGGCCGTGTAGCagccgcccctagcttcgtagcactgggcagccggcatttcatcatgctcacgggtttgtgggtgggaattcgaatggcacagtgtggatggcttgtccctgccccgcgatgtctgggacctcagctggaaaggctggtgtgacttggggcgacgggagtggctgggggttggataatatggaggtgccactgggcaccctgaaccctgtgcatctgtgtaaggcctcacgggggcttgagctccctcacaacatggccgcctcagctgacagacctcctgcctggcagctctgggctttaatagctggtattccaggaagctgcgacttttttttttttcaagatggagtctcgctctgtcgcccaggctggagtgcagtggcgcaatcttggctcactgcaacctccacctccccagttcaagtgattctcctgcctcagcct-cccgagtagctgggattacaggcctgcgccaccatgcccagctaattttgtatttttattagagactgggtttcttcatgttggtcagactggtctcgaactcccaacctctggtgatctgcctgcctcggcctcccaaagtgctgggattacaggcatgagccactgtgcctgtccaaagctatgactttttatgaGTGAGCTGCGAAGGATCGTCCAGTTGTTCTCACGCTTTCCTCCCTGAAGGACGCAGGGTCCAGGTCTTATTCCTTTAGGGATTCCCCGTGCCTCGCGCTGCCTAAGCTCATGGTTTTAAAGTGTGTCCTGGGAGGTGGAAGGTGTGAGTAAATCTTGCGGTATTTCTCATCCAAAATTGTAAATGTAAATTGTCATGCCAATGCAGTTTGAAGATGGCATGAAAGAGTGACTGAATATAGTATCAGGAAGTTTAAAATTAAAGACTGTTGTCTTTCTCTTTTGCAATGGCAGAGTCTGATTATTTTCAAGGTAATTATAGCATTCATACCAACGGCCAATGTGCTCAGCACttgatggaataccggctatgtgccaggctctgccgtacacagaattccaggtactactccacatcccagtgaagtgcggggttagcaccatccatcctttacagaaggggaaactgaggctcagagtggcaaaatcactgctcaagacaaggtggcgggacggggatttgaacccaggacagatgactgcgacccacggtctcactgccccCTCCACGCCCTGCTGTGGTGAACCGAGTGTGCTGCCTGATAAACCAGCTAGTTTTTAGGAAATGGGGTTGACTGGGGTCTTGCGGCAGGGGGCAGAGtttgttt s panTro1.chr6_random 286751 1814 - 67355074 GGTGCCCCCTCAGTGCTGGGAGGGCTCCCTGGCAGCGAGGAGCAGAGGGTGGGCCCTCAGGGAGGGATGCTGGACCCCGGGGTGGCGTCCGAGTGGGGCTTCACTCCTGATGCAAGAGCCTGCAGGCAGAGAGGGCTTCCCGTGGAGA-CCCCCTCAGCCTCTGCACACCCAAGGAGGAGCAAAACCCCGTTCCAAATGTGCACGCCTCAGTTTCCCCACCTCAGTGTGTACCTCCAGCTCCTCACAGTGTGGGGTGGAGCAGGAGCCGGGAGTGAGTGATTCCAGCAGGATTTTAAGAGCAACACAGACATTTCAACGATGCCTTGAACAGGGGAGTCGTTCTGTAATATGAGGGTTCATCCTGATGCAGGTTGAACATCCCGCCTGTCGGTGCCCTGTGCCACCTGCCTGTGTAGGTGAGGGCACAGGAGGGGGTGCATGTGGCCCATGACTTAGCACCTCTGTTTGTCTGCAAGATAAAGACTTAGGGCTTAGCGTGGTGGGCCGTGTAGCAGCCGCCCCTAGCTTCGTAGCACTGGGCAGCCGGcatttcgtcatgctctcgggtttgtgggtgggaatttgaatggcacagtgtggatggcttgtccctgccccgcgatgtctgggacctcagctggaaaggctggtgtgacttg-------gggagtggctgggggttggataatatggaggtgccactgggcaccctgaacactgtgcgtctgtacaaggcctcacgggggcttgagctccctcacaacatggccacctcagctgtcagacctcctgcctggcagctctgggctttaatagctggtgttccaggaagctgcgacttttttttttttcaagatggagtctcgctctatcgcccaggctggagtgcaatggcgcaatcttggctcactgcaacctccgcctccccagttcaagtgatcctcctgcctcagcctccccgagtagctgggattacaggcctgcgccaccatgcccagctaattttgtatttttattagagactgggtttcttcatgttggtcagactggtctcgaactcccaacctctggtgatctgcctgcctccgcctcccaaagtgctgggattacaggcgtgagccactgtgcctgtccaaagctgtgactttttatgagtgagctgcgaagtATCGTCCAATTGTTCTCACGCTCTCCTCCCTGAAGGACGCAGGGTCCAGGTCTTATTCCTTTAGGGATTCCCCGTGCCTCGCGCTGCCTAAGCTCATGGTTTTAAAGTGTGTCCTGGGAGGTGGAAGGTGTGAGTAAATCTTGCGGTGTTTCTCATCCAAAATTGTAAATGTAAATTGTCATGCCAATGCAGTTTGAAGGTGGCATGAAAGAGTGACTGAATATAGTATCAGGAAGTTTAAAATTAAAGACTGTTGTCTTTCTCTTTTGCAATGGCAGAGTCCGATTATTTTCAAGCTAATTATAGCATTCATACCAACAGCCAATGTGCTcagcacttgatggaataccagctatgtgccaggctctgccctacacagaattccaggtactactccacatcccagtgaagtgcggggttagcaccatccatcctttacagaaggggaaactgaggcacagagtggcaaaatcactgctcaagacaaggtggcgggacggggatttgaacccaggacagatgactgcgacccacgatctcactgccccCTCCACGCCCTGCTGTGGTGAACCGAGTGTGCTGCCTGATAAACCAGCTGGTTTTTAGGAAATGGGGTTGACTGGGGTCTTGCGGCAGGGGGCAGAGTTTGTTT a score=88441.0 s hg17.chr7_random 457330 1034 + 778964 GTTTGTTTCTTAaacagctttacagaggtagaattcatatatgataaaattcacccactgtaagtagcctattcagtgactttgaacgaatttacagaattatgccaccatcatcatgatccaattttagagcgtttccatcatcccagaaagttcccttgtgcctgtttatggttaatcctcacttccacccccgtccaccatgaatctgcctgcattttctggacatttgaaataaacggagtcgggtgggtgcggtggctcatgcctgtcatcctaacattttgggaggctgaggtgggtggatcgcttgagctcaggagttcaagaccagcctagccaacatagcaagacccgatctctacaaaaaatagctgggtgtggtggtgcgtgcctggagtcccagccacttggggaggagggaggagggcggatcccttgaacccgggaggttgaggctgcagtgagctggattgtgccactgtgccctaatctgggtgacagagtgagaccctgtctcaaaaaaagtgacaaaagtaaatacatacataaataaatggagtcattcaatatgtgacTCTAAaaataaataaaaaatagtgataataaaagtaaataaatacataaataaatGGAGTCATTCAATACGTGACTAAAAATAACACAGTGATAATAA---GTAAATAAAcacataaatagagtcgttcaatacgtggtcttttgtgtctggcttctttcactcagggtgttttttgaggttcatccatattttagcacatttatgtactttcttgacaatatcccattgtatggatctactgtaatttgatcaccgcccgctccctgccatggacctgtgggttgttgtcagtttggagctattatgaacaatacggcGTcatctgggttgttttcagtttggagctattatgaacaatacggcACcatttgggttgttttcgctttggagctattatgaacaatacggcGTCATCTGGGTTGTTTGCTGTTCGGAGCTATTATGAACAATGCGGCAT s panTro1.chr6_random 288565 988 - 67355074 GTTTGTTTCTTAaacagctttacagaggtagaattcatatatgataaaattcacccactgtaagtagcctattcagtgactttgaacgaatttacagaattatgccaccatcatcatgatccaattttagagcgtttccatcatcccagaacgttcccttgtgcctgtttatggttaatcctcacttccacccccatccaccatgaatctgcctgcattttctggacatttgaaataaacggagtcaGGTgggtgcggtggctcatgcctgtcatcctaacattttgggaggctgaggtgggtggatcgcttgagctcaggagttcaagaccagcctagccaacatagcaagacccgatctctacaaaaaatagctgggtgtggtggtgcgtgcctggagtcccagccacttggggaggagggaggagggcggatcccttgaacccaggaggttgaggctgcagtgagctggattgtgccactgtgccctaatctgggtgacagagtgagaccctgtctcaaaaaaaGTGACAAaagtaaatacatacataaataaatggagtcattcaatatgtgactctaaaaataaattaaaaatagtgataataaaagtaaataaatacataaataaatggagtcattcaatacgtgactaaaaataacacagtgataataataagtaaataaacacataaatagagtcattcaatatgtggtcttttgtgtctggcttctttcactcagggtgttttttgaggttcatccatattttagcacatatatgtactttattgataatatcccattgtatggatctactgtaatttgatcaccgcccgctccctgccatggacatgtgggttgt-------------------------------------------------cagtttggagctattatgaacaatacggcGTcatttgggttgttttcagtttggagctattatgaacaatacggcGTcatttgggttgtttgctgttcggagctattatgaacaatgcggcAT a score=18440.0 s hg17.chr7_random 458364 147 + 778964 catttgtgttgttttctgtttggagctattatgaacaatacggc-gtgaacagccttatgcgtgtctgtgtgaacgtacgttttcacttctctggagtagattcctaggagtggaattgctgggtcttttcccggc-------------ctttaaagaatt s panTro1.chr6_random 289553 147 - 67355074 catttgtgttgttttctgtttggagctattatgaacaatacggc-gtgaacagtcttatgcatgtctgcgtgaacgttcattttcacttctctggagtagattcctaggagtggaattgctgggtcttttcccggc-------------ctttaaagaatt s canFam1.chrUn 89210894 160 - 91062872 catttgggtggttttcag-ctggggctcctgtgaggagcagtgctactgatgctctcatatgtatctccgagaggacatgttttcattgttcttgggtagaaatctaatgggggatcttctgggttatatgctgactctatgtctaactttttaaggaacc a score=27232.0 s hg17.chr7_random 458511 303 + 778964 ctcttttccggccgggcgcggtggctcacgcctgtaatcccagaactttgggaggccgaggcgggcggatcatgaggtcgggagatggagaccatcctggccaacacggtgaaacgccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggcacctgtagtcccagctactcggaaggcagaggcaggagaatggcgtgaacccgggaggcggagcttgcagggagccagatggcaccactgcactccagcctgggcgacagagtgagactcaaaacaaaaaaaaaagaatt s panTro1.chr6_random 289700 303 - 67355074 ctcttttccggcctggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcatgaggtcgggagatcgagaccatcctggccaacacggtgaaacgccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactgggaaggcagaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccagatggcgccactgcactccagcctgggcgacagagcaagactcaaaacaaaaaataaagaatt a score=24653.0 s hg17.chr7_random 458814 193 + 778964 gtctcttttccaaagtggctgcaccattttgcatttccaccagcaacgtatgagggttctcatttctccacatccttgctggcatttggtattgtctgt-cttttattgtagtcattctagtggatgcaaagtggtatttcatttgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtt s panTro1.chr6_random 290003 184 - 67355074 gtctcttttccaaagtggctgcaccattttgcatttccaccagcaacgtatgagggttctcatttctccacatccttgctggcatttggtattgtctgt-cttttattgtagtcattctagtggatgcaaagtggtatttcatt---------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtt s canFam1.chrUn 89211054 136 - 91062872 acctgttttccaaagtggctgcac--gttcgtgctcccacctgcagtgctccagggttcccatttctctgcacacctgctggtgtttggcactgcctgtcctttcattatggtcagcccagcag-----------------------------gtgtgt---------------------------tgtggaat a score=24542.0 s hg17.chr7_random 459007 284 + 778964 tgagacagagttttgctcttgttg-cccaggctgg-agtgcaatggtgggatctctgctcactgcaacctccaccttctgggttcaggtgattcccctgcctcagcctctcgagtagctgggattacaggcagctgccaccacacccggctaatttttgtatttttagtagagatggggtttcaccatgttagccaggttggtctcgaactcctgacctcaggtggtccacccgcctcggcctcccgaagtgctgggattacagg-cgtgagcca--ccgcgccc-agcc s panTro1.chr6_random 290187 290 - 67355074 tgagacagagtgttgctcttgttgtcccaggctgggagtgcaatggtgggatctctgctcactgcaacctccgccttctgggttcaggtgattcccctgcctcagcctcccgagtagctgggattacaggcagctgccaccacacccggctaatttttgtatttttagtagagatggggtttcaccatgttagccaggttggtctcgaactcctgacctcaggtggtccacccgcctcggcctcccgaagtgctgggattacagggcgtgagccaaaccgtgccccagcc a score=36366.0 s hg17.chr7_random 459291 234 + 778964 tctttgtggttttgattcacatttcctgaatgactaatggggttgaacagcttttcaggtgtttcttagccagtcgtttaacttctttggtaaaatgtctgtccgaatcgtatgtctattttaagattgagttcttggtcttattatggagttgtaagtgttctttatatgttctggatacaagtcctttaccagacacagggtttacagatattttc-cccagtctgtggtttg s panTro1.chr6_random 290477 232 - 67355074 tctttgtggttttgattcacatttcctgaatgactaatggggttgaacagattttcaggtgtttcttagccagtcgtttaacttctttggtaaaatatctgtccgaatcgtatgtctattttaagattgagttcttggtcttat---ggagttgtaagtgttctttatattttctggatacaaatcctttaccagacacagggtttacagatattttctcccagtctgtggtttg s canFam1.chrUn 89211190 225 - 91062872 cctacattgtgttgatttgcatttccctaataactaatgagactggacatctttcc-tatggttcttagccatttgcacaatatctttggcaaaatatctgtcaattttttttgctcatttttcaatggtcttctta---tcat---tgactttggagtgctctttatatattctggatacaagtcctttatcagatgta-tatttgcatatattttttccc--tatttggtttg a score=12429.0 s hg17.chr7_random 459525 64 + 778964 ctgtcttcattttcttaatggtgttttttgaagtgcaaaaatttttattttg-atgaagttcaat s panTro1.chr6_random 290709 64 - 67355074 ctgtcttcattttcttaatggtgttttttgaagtgcgaaaatttttattttg-atgaagttcaat s canFam1.chrUn 89211822 65 - 91062872 CCAttttcattttcttaatggtatcttttaaagtgtgaaagttctcaattcacatgaaagtcagt a score=55676.0 s hg17.chr7_random 459589 614 + 778964 ttatcttttttttttttttc--gagacggagtctcgctctgttgcccaggctggagtgcaatagtacgatctcggctcactgcaacctgcgcctcccgggtttaagtgattctccttcctcagcctcctgagtagctgggactacaggcgcatgccaccacgcctggctaacttttt-tatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccgcccaccttgacctcccaaagtgctgggattacaggtgtgagccactgcacccggccAGtttttctttctttttttctttttaaggatggattcttgctctgttgcccaggctggagtgcagtggcgcgatgatcatggctcaccgcagcctcgaattcctgggctcgagcagttctctgcctcagcctcctgaatagctgggactacatgcttgcaccaccatgccaggctaattaattttttaatttttttgtagagatggggtcccactctgttgcccaggcaggctgagagctcctggcctcaagccatcctcccgccttggcctctcaaagtgctgggattacaggcgtgagccagtatgcctggc s panTro1.chr6_random 290773 613 - 67355074 ttatctttttttttttttttttgagacggagtctcgctgtgtcgcccaggctggagtgcaatagtacgatctcggctcactgcaacctgcgcctcccgggtttaagcgattctccttcctcagcctcctgagtagctgggattacaggcgcatgccaccacgcctggctaactttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccgcccaccttgacctcccaaagtgctgggattacaggtgtgagccactgcacccggccAGtttttcttt----ttttctttttaaggatggattcttgctccgttgcccaggctggagtgcagtggcgcgatgatcatggctcaccgcagcctcgaattcctgggctcgagcagttctctgcctcagcctcctgaatagctgggactacatgcttgcaccaccatgccaggctaattaattttttaatttttttgtagagatggggtcccactctgttgcccaggcaggccgagagctcctggcctcaagcgatcctcccgccttggcctctcaaagtgctgggattacaggcgtgagccagtacgcctggc a score=58406.0 s hg17.chr7_random 460203 451 + 778964 agttttatcttttttcaattatgcttttgcggttacatctaaaatctctttgcttcacccacattaatgaagattttctctgattttgtcttct------tttatagtttcagctcttacatttaggactgtcatccattttgagttactttctgtgtgaggagtga-gtaagtgtccaagttcattgttcttagtgggtatccagttgtcccagcacgatttgttgaaagcactctttctttccccattgacttgccttggcaccctggttggaaatcagttgaccacaaatgtaagggtggatttctggcctctcagtacaaatccgttttactaataccaccacc-gtcttgattacagtggttttgta-gtaggttttcagatcaggtagtcaaagtccccctactccgttcc---ttttcaaaactgtctcggctatttccaagtgcccttacatttc s panTro1.chr6_random 291386 451 - 67355074 agttttttcttttttcaattatgcttttgtggttacatctaaaatctctttgcctaacccacattaatgaagattttctgtgattttgtcttct------tttatagtttcagctcttacatttaggactgtcatccattttgagttactttctgtgtgcggagtga-gtaactgtccaagttcattgttcttagcgggtatccagttgtcccagcacgatttgttgaaagcactctttctttccccattgacttgccttggcaccctggttggagatcagttgaccacaaatgtaagggtggatttctggcctctcagtacaaatctgttttagtaataccaccacc-gtcttgattacggtggttttata-gtaggttttcagatcacgtagtcaaagtccccctgttccgttcc---ttttcaaaactgtctcggctatttccaagtgcccttacatttc s canFam1.chrUn 89211892 428 - 91062872 aattattccttctgtggatcatgctat-----ttatacccacagactctgcacctaacccacatcaatagagggtttcttctacattttcatgtaaaaactgtatagtcttagctcttccatttaggtctgtggcctgctttgagtcatgtcttgtgtatggcttgaggctaggatctaagtgtatttctctctgtggaaatccagttgtcccagtgccttctatgaaga----ctcttctctccccattgaa------------------tgggaatccatcggccgtaaatgtgaagct-tatctctaggctctgagt-----tctgtcctgctgctctgtgcacctgccgtgacaccgaaagcataccatgttgggctcagggctttgtagtcacgagcctctcattttgttcctctttctcaaagttatcccagctgttt--gaggccctttacatttc a score=28173.0 s hg17.chr7_random 460654 324 + 778964 tgtatgaatttcattt---------tttaaaatttttatttatctttttgagacagagtctcgctctgtcacccaggctggagtacagtggcgcgattttggctcaacacaaccttcacctcccaggctcaagcgattctcctacctcagtctcccgagtagctgggattacaggtgcccaccaccacatctggataatttttgtatttgtaatagagacgggggtttcaccatgttggccaggatggtctcgaactcctgacctcaagtgatccgcccgcttcagcctcccaaagtgctgggactacaggcgtgagcccccgcgcccggccg s panTro1.chr6_random 291837 327 - 67355074 tgtatgaatttcatttaaaaaatttttta-----tttatttatctttttgagacagagtctcgctctgtcacccaggctggagtgcagtggcgcgattttggctcaacacaaccttcacctcccaggctcaagcgattctcctgcttcagtctcccgagtagctgggattacaggtgcccagcaccacatctggataatttttgtatttgtaatagagacgggg-tttcaccatgttggccaggatggtctcgaactcctgacctcaagtgatccgcccgcttcagcctcccaaagtgctgggactacaggcgtgagcccccgcgcccggccg a score=48234.0 s hg17.chr7_random 460978 398 + 778964 catgtgaattttagggtcagcttagcagttgtaagagtgtgtgttgaattgatagatcagtttgg--------tgtcatcttgtcaatattgaatcttctcaataaaga-------------ttgtatTTAGATCTTTAACTTCTC--AGCAGTATTTCGAAGTCCT-----GCCCGTCTTCTCGTAAATGTTTCCCCTG-CATTTCATTCCTTTCAATGTCATTACGAGGAAGACAATGTTCTTAGCAGGGCTGGCTGGCATTGA---GGA---------AGGGTCGCCAGTAGGCAAGAATGT-----CTGAGCCTG-----GCGAGGAGAGAGCCCTGTGCCCCGTGATGTGTCTAGGAGAGACCCTCGGGGAGAGGCAGGTGGCTGAGTGCACAGAGGAG--------TTGCTGAGCCGACTTCACCTGTCCCGAGGCCCCCGGGGGACGATC s panTro1.chr6_random 292164 397 - 67355074 cgtgtgaattttagagtcagcttagcagttgtaagagtgtgtgttgaattgatagatcagttcgg--------tgtcatcttgtcaatattgaatcttctcaataaaga-------------ttgtatTTAGATCTTTAACTTCTC--AGCAGTATTTCGAAGTCCT-----GCCCATCTTCTCGTAA-TGTTTCCCCTG-CATTTCATTCCTTTCAATGTCATTACGAGGAAGACAATGTTCTTAGCAGGGCTGGCTGGCATTGA---GGA---------AGGGTCGCCTGTAGGCAAGAATGT-----CTGAGCCTG-----GCGAGGAGAGAGCCCTGTGCCCCGTGATGTGTCTAGGAGAGACCTTCGGGGAGAGGCAGGTGGCTGAGTGCACAGAGGAG--------TTGCTGAGCCGACTTCACCTGTCCCGAGGCCCCCAGGGGACGATC s canFam1.chrUn 89212320 436 - 91062872 catataaattttaggtg----ttttctatttaaaaagcctgcattgaatttggaggtcagtttgttacagacctggcgtctcatcaggattaaggcttctgagtcacgaacatgaaatgtgtctctacttagatccttaatttctcttagcagtattttgtagtattcagtagacaagttttt------catttctcttgatattttattcttttcaatgctgctctgaaGCTGACAGCATTCCCAGCAGGGTGAGCTGGCCTTGGTGTGGAGGCCACTGTGGGGTCTCCAGTGGGCAGGGGTGTGGCAGGCAAGCCTGCCACAGCAGGGAGGGAG-CCGGTGCCTGGCTG-----CCAGGAGACTCCCATTGGT-GAAGCAGCCG--TGTCTGCCCAGAGGAACTATGGCTTTATTGGGAGAGTTTCACTGCACCC--GGCCTGGGACAGCTGGTC a score=3434.0 s hg17.chr7_random 461376 31 + 778964 TGTCAGCCCCAGTGA--------------AGGGAGCTGGGGGAGC s panTro1.chr6_random 292561 31 - 67355074 TGTCAGCCCCAGTGA--------------AGGGAGCTGGGGGAGC s mm5.chr5 12727010 28 - 149219885 TGCCATCTCCA---A--------------GAGGCACTCAGGAAAG s canFam1.chrUn 89212756 45 - 91062872 AGTCACTACCAGGCATATTGTCTCCAACTGGGGGGCTGGGTGAGA a score=110714.0 s hg17.chr7_random 461407 286 + 778964 TCTCCAGACTGGTTTTTAATTATGTGAGGTGTGTTCACCACCAACTTCAGTAGGATGCCTCCGGGACCTGTTTAGGGGAAAAGCAATTCCACAGCTAAACATTCGTTGCCCTGTTTATCCGGGCATGGGGCTGAAATTCAAATTAAAATGTGCCAAGTCGAGGAGCTCACAGGGGTTTCTAAAGATATTTTAGGCTTTCAGTCCCAGGCTCATTCCAAGGTGTTTATTAAGTGCCTGCTGGGTGCCCACGCGGGCCTGGGCCA-GGCACACAGACAACGCTGGTGCT s panTro1.chr6_random 292592 286 - 67355074 TCTCCAGACTGGTTTTTAATTATGTGAGGTGTGTTCACCACCAACTTCAGTAGGATGCCTCCGGGACCTGTTTAGGGGAAAAGCAATTCCACAGCTAAACCTTCGTTGCCCTGTTTATCCGGGCATGGGGCTGAAATTCAAATTAAAATGTGCCAAGTCGAGGAGCTCACAGGGGTTTCTAAAGATATTTTAGGCTTTCAGTCCCAGGCTCATTCCAAGGTGTTTATTAAGTGCCTGCTGGGTGCCCACGCGGGCCTGGGCCA-GGCACACAGACAACGCTGGTGCT s mm5.chr5 12727038 270 - 149219885 ACTCCCG-CTAGATTTTAATGACCTGCCATGTTT-----ACAGACTT--AGAAGATGCCTCAGGGACCTGAGT-GGTAAGAAGTGGTTCCACAACTCAACATCAGCAGGGCTGTTGATCTGGGCTTCAGGCTGACATTTGAATCCAAATGTGCTGAGCTGTGGAGC-CACAGGGGCTTCTGAAAGTATTTTAGGTTTTTCTTCACGGGTTCGTTCTGAGGCGTTTATTAACTGTGTGTGGAGTGCCCACACTGGCCCTCTC-------CACAAGCGATGCTGGGGCT s rn3.chr12 16080759 271 + 46649226 TCTCCAAGGGGCTCAGTAATGACCTGAGATGTTT-----ACAGACTT--AGAAGATGCCTTGGGGACCTGAAT-GGGGAAAAGTAGTTCCACAGCTCCACATCGGCAGGGCTGTTGCTCTGGGCTTCAGGCTGACATTTAAATCCAAATGAACTGAGCTGTAGGGC-CACAGGGGCTTCTGAAAGTATTTTAGGTTTTTCTTCACAGGTTCACTCTGAGGTGTTTATTAACTGCGTACAGAGTGCCCACACTGGCCCTCTC-------CACATGTGACACTGAAGCT s canFam1.chrUn 89212801 278 - 91062872 TCTCCAGACAGGGTTATAATTATGTCAGGTGTGTTC---ACTGGCCTCTGCAAGGTGCATCTGGGGCC-ATTTAGGGGGAAAGCTATTCCCCAGCTACACATTTACTGCGCTGCTTGTCTGGGCGTGGGACTAAAATTGAAGTTAAAATGTGCCAAGTGCAGGGACTCATAGGCATTTCTAAGCATCTTCCAGGCCTTTGT--CCAGTTTCATTCCAGGACATTTACTATGTGACTACTACATGTCCCTGCTAGCTGGGCCTATGGCACTTAT---ATACCAGGGCT a score=8527.0 s hg17.chr7_random 461693 141 + 778964 TGCCAGCTAGGTGGGCACAGGGTCCTGCC--CCGCGTCTTCTCCGCCGGCGGGGCAGGATGAGAAC------ACGGGGCACCATAGGAAGAGGACACACTCCTCTATGTCATGCACTTCAGAGGC-TGCAGAAGACAATC-T-----------GGGCGTCCA s panTro1.chr6_random 292878 140 - 67355074 TGCCAGCTAGGTGGGCACAGGGTCCTGCC--CCGCGTCTTCTCCGCCGG-GGGGCAGGATGAGAAC------AAGGGGCATGATAGGAAGAGGACACACTCGTCTATGTCATGCACTTCAGAGGC-TGCAGAAGACAATC-T-----------GGGCGTCCA s rn3.chr12 16081030 113 + 46649226 ------------------GGTCTCCTGCCCGCCCCGGCTTCTTTAGGGACTGTTTGGGATGTGAA---------ACGTCTGGATAGGGACAGAGCA---------------------TGGGAAGCTTGCAGGAAGCAAAC-CGTGGGGGTGGGGGGTGGGGG s canFam1.chrUn 89213079 131 - 91062872 ---------------TGCAAGGCCCCCCA--GCACGTGGTCTCCAGAGACAG--TAGGATGAGCCCCATGGAACCCAGCATGGCACAAACAGAGCAGACTCTTTCCTGCCCTGAGCTGAAGAGAC-TGTAGGAACCAGTTAT-----------GGGCATCCA a score=2566.0 s hg17.chr7_random 461834 101 + 778964 CACGGAGCTGCCCCCC----------ATGCAGGGTTCT------------------------------------------CATTG-----------TCCAACACAAGCTCTGTGCTGCCTGTTTT---AGCCCCCATCTTCCCTGttatttatttattt-------atttattt s panTro1.chr6_random 293018 100 - 67355074 CACGGAGCTG-CCCCC----------ATGCAGGGTTCT------------------------------------------CGTTG-----------TCCAACACAAGCTTTGTGCTGCCTGTTTT---AGCCCCCATCTTCCCTGTTATTTATTTATTT-------ATTAAttt s rn3.chr12 16081143 98 + 46649226 TGGGGAGAGGTCTTCTCAGCTCTTGGGTTCAGGGTTCA------------------------------------------CATT--------------------AATGTGTGAGCTA--TGATTTTGGAGGATCGAGCCTTCCTGTT-----TCCGCAA-------ATTTATTT s canFam1.chrUn 89213313 163 - 91062872 CAAGGAGCCCCCCCCCCA--------GTGTTGGGTCCTGCCTCCTCTGGGGGCTGGGGAGAGCATCCAGGGGACCTCCAGCATTGGTCTCTTCCCCCTCAGCGTGAGATGAGTGTGTCTGGTTCT---AGCTTTCCCTATTCCCATTGTTTttttattttattttattttattt a score=273.0 s hg17.chr7_random 461935 1 + 778964 t s panTro1.chr6_random 293118 1 - 67355074 t s rn3.chr12 16081241 1 + 46649226 T a score=23952.0 s hg17.chr7_random 461936 284 + 778964 tttagatggagtctctctcttgtcccccaggctggagtgcagtggtgcgatctcggctc-actgcaacctccac--ctcaggttcaagcgattctgctgcctcagcctcctcagtagctggga-ttacaggcacctgccaccacacccggctaattttttgtatttttagtagagacggagtttcactatgttggccaggctggtctcgatctcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggatcacaggcgtgagccaccgcacccg-gcc s panTro1.chr6_random 293119 289 - 67355074 tttagatggagtctcgctcttgttgcccaggctggagtgcagtggtgcgatcttggctcgactgcaacctccacctctcaggttcaagcgattctcctgcctcagcctcctcagtagctgggatttacaggcacctgccaccacacccggctcattttttgtatttttagtagagacggagtttcactatgttggccaggctggtctcgatctcctgacctcaggtgatccacccgcctcgacctcccaaagtgctgggatcacaggcgtgagccaccccacccgAGCC a score=2118.0 s hg17.chr7_random 462220 15 + 778964 CATTATTTGCTCTTG s panTro1.chr6_random 293408 15 - 67355074 CATTATTTGCTCTTG s canFam1.chrUn 89213634 15 - 91062872 TGTTCTTTATTCCTT a score=14166.0 s hg17.chr7_random 462235 75 + 778964 ATTCTTTTAAAGGTGCACTGAAGATTTACAAATATCAGGA--AATGAACATTTTATTTTTTCCTTAGGTTTAAAGAC s panTro1.chr6_random 293423 75 - 67355074 ATTCTTTTAAAGGTGCACTGAAGATTTACAAATATCAGGA--AATGAACATTTTATTTTTTCCTTAGTTTTAAAGAC s rn3.chr12 16081242 71 + 46649226 ATTCACTAAAAGGTGTACACGAGATCTATAAAAGGCAG----AATGAACATTTCCTTTGTCCAT--GGTTTTAAGAC s canFam1.chrUn 89213649 69 - 91062872 TTTTCCTTTAAGGTGACTTTCATATTTATGCACATTAGGAAGAATAAATACTCTTTT--------AGTTTTAAAGAG a score=4898.0 s hg17.chr7_random 462310 21 + 778964 TGTATAAAGCATTTTAATAAA s panTro1.chr6_random 293498 21 - 67355074 TGTATAAAGCATTTTAATAAA s canFam1.chrUn 89213718 21 - 91062872 CGTATAATGCATTTTAATGAA a score=15431.0 s hg17.chr7_random 462331 166 + 778964 CATGAtttgtttgtttgtttttttgagacagagtcttactccttcacccaggctggagtgcagtggcgcaatctcggctcattgcaatctccacctccctggttcaagcgattctcccgcctcagcctcccaagtagctgggattacaggtgcgccaccatgccca s panTro1.chr6_random 293519 166 - 67355074 CATGAtttgtttgtttgtttttttgagacagagtcttactccttcacccaggctggagtgcagtggcgcaatctcggctcattgcaatcttcacctccctggttccagcgattcttccgcctcagcctcccaagtagctgggattacaggtgcgccaccatgccca a score=3963.0 s hg17.chr7_random 462511 116 + 778964 ttttagttagagacgggatttcaccatgt-----aggct--------agacctctgcctccgaagctcaagcgatcctcccacctcagcctcccgaggagccgggactacaggtgtgcaccaccacgcc s panTro1.chr6_random 293700 117 - 67355074 tttttg-tagagatggggtttcgcggtgtggcccaggctggtctcaaag---------tcctgagctcaaaccgtccacccgccttagcctcccaaagtgctgggatt--aggtgtgaaccaccacacc a score=14079.0 s hg17.chr7_random 462629 147 + 778964 gctaatttttgtatgtttttgtagagatggggtttcgcggtgtggcccaggctggtctcaaagtcctgagctcaaaccgtccacccgccttagcctcccaaagtgctgggattaggtgtgaaccaccacaccTCACCTCCTTCAAGG s panTro1.chr6_random 293685 147 - 67355074 gctaatttttgtatgtttttgtagagatggggtttcgcggtgtggcccaggctggtctcaaagtcctgagctcaaaccgtccacccgccttagcctcccaaagtgctgggattaggtgtgaaccaccacaccTCACCTCCTTCAAGG a score=19779.0 s hg17.chr7_random 462776 194 + 778964 TTTCTGACTGGTCCTGGAGCTTGGCCTGTCCCGGCACTCCCCACCCCCCACCTTCAGCACCTG---------GCCCCTTCCCTCACGGCCGTTCTTTCCCACTCGCCGTGGTTTGCGGGGTCACAGTTGTTGAGGAAGTTGCAGACA----CCTGGGAGCTGCTCTTGATAGCAGGGAGTTTGGCG----TGTGATACCCATTCCTCACCC s panTro1.chr6_random 293832 194 - 67355074 TTTCTGACTGGTCCTGGAGCTTGGCCTGTCCCGGCGCTCCCCGCCTGCCACCTTCAGCACCTG---------GCCCCTTCCCTCACGGCCGTTCTTTCCCACTCGCCGTGGTTTGGGGGGTCACAGTTGTTGAGGAAGTTGCAGACA----CCTGGGAGCTGCTCTTGATAGCAGGGAGTTTGGCG----TGTGATACCCATTCCTCACCC s rn3.chr12 16081857 187 + 46649226 TCTCTGACTCTTCCAGAATCCATGCCTGCTCACGCTTTCCTCAC------TCCGTAGCAGCTAATGTTGTCTGTATATCCTCGCAGTGCTATCTCTGACCACTTTCC----CCCACGGTGTCACA----------CAGCTGCAGACATGCTCCGAGGAACTGTTCTATATACTGTAGA---TGGCAGCACTGTGACACTTATCCAACA-CT a score=546.0 s hg17.chr7_random 462970 1 + 778964 A s panTro1.chr6_random 294026 1 - 67355074 A s rn3.chr12 16082044 1 + 46649226 A s canFam1.chrUn 89221417 1 - 91062872 A a score=-290.0 s hg17.chr7_random 462971 100 + 778964 GGAGGGAG--GGGCGTGCAGGTGCAGAGACAGAGAGATGGACCCGACCCG-----TCAGGTCCCGC---CGGCCCCCTCCCCA-GCAGGCTTCTACAGCACAGCCTCTGTG- s panTro1.chr6_random 294027 100 - 67355074 GGAGGGAG--GGGCGTGCAGGTGCAGAGACAGAGAGATGGACCCGACCTG-----TCAGGTCCCGC---CGGCCCCCTCCCCA-GCAGGCTTCTACAGCACAGCCTCCGTG- s rn3.chr12 16082045 95 + 46649226 GGAGGAAGACAGACAGACAGACAGACAGACAGACAGACAGA--CGATTGGGGATCTTGGACCTCAA---AGCTGCCCTGTCTA-GCAATGTTT----------CCACTATG- s canFam1.chrUn 89221418 86 - 91062872 GAGAGGAG--GGGTGAGGTGGTATGGGGG-AGAGAGACAGACAC-----------ACAAGCC----------TGCTCCCTCAA-CCCTGAGTTTGCTTTGCAAATTTGGTG- s danRer1.chrNA 96251705 102 + 390413307 GGGGGGGG--GGGTTCGCAGATATA---ACTGAG-----GACGTGGGTGGGTGAGGGAGGTGTCGCGGACGCTGCCCTCTCCATTCAGTCGTCCTAGGCGCGGATATGATTG a score=-1279.0 s hg17.chr7_random 463071 33 + 778964 AGGGTGGAAATGCTTCTGTCTGAGCTGCTGTCC--- s canFam1.chrUn 89221504 30 - 91062872 ACAATGGGCA---TTCTGTGTCTGCTGTTGGTC--- s danRer1.chrNA 96251807 33 + 390413307 AGGACGAAGG---TGGTGAGGGAGGTGTCGTGGACA a score=-373.0 s hg17.chr7_random 463071 24 + 778964 ------AGGGTGGAAATGCTTCTGTCTGAG s panTro1.chr6_random 294127 24 - 67355074 ------AGGGTGGAAATGCTTCTGTCTGAG s canFam1.chrUn 89221504 21 - 91062872 ------ACAATGGGCATTCTG-TGTCTG-- s danRer1.chrNA 96251807 24 + 390413307 AGGACGAAGGTGGTGAGGGAGGTG------ a score=2907.0 s hg17.chr7_random 463095 9 + 778964 CTGCTGTCC s panTro1.chr6_random 294151 9 - 67355074 CTGCTGTCC s mm5.chr5 12728279 9 - 149219885 CTGCTGTCA s canFam1.chrUn 89221525 9 - 91062872 CTGTTGGTC s danRer1.chrNA 96251831 9 + 390413307 TCGTGGACA a score=32887.0 s hg17.chr7_random 463104 67 + 778964 TCACAGTGGCCACGGG---CTGGGGAGGTGCTGGCCACCTGGGGTCACTGTGTTCCAGCAGTTGAGAGAG s panTro1.chr6_random 294160 67 - 67355074 TCACAGTGGCCACGGG---CTGGGGAGGTGCTGGCCACCTGGGGTCACTGTGTTCCAGCAGTTGAGAGAG s mm5.chr5 12728288 67 - 149219885 TGGTAACAGTCACCAG---CCAGGCAGGTGCTGGCCACCTGGGGTCACTGTGCACCAGCTATTGGTAGAG s rn3.chr12 16082140 67 + 46649226 TCACAACAGTCACTGG---CCAGGCAGGTGCCGGCCACCTGGGGTCACTGTGCACCAGCTATTGGTAGAG s canFam1.chrUn 89221535 61 - 91062872 ACACAGCTGACAGCA--------GGAGGTGCTGGCCACCTGGGGTCACTGCGCTCCATCTGTTGGAGAA- s danRer1.chrNA 96251840 63 + 390413307 TAACCGAGGACGCGGGTGTTGAGGGAGGTGTCG-----CGGATATAACTGAGAACGAG--GGTGGTGAGG a score=606.0 s hg17.chr7_random 463171 3 + 778964 GCA s panTro1.chr6_random 294227 3 - 67355074 GCA s mm5.chr5 12728355 3 - 149219885 TCA s canFam1.chrUn 89221596 3 - 91062872 GGA s danRer1.chrNA 96251903 3 + 390413307 GAA a score=7846.0 s hg17.chr7_random 463174 115 + 778964 GAGCATTGGCTGTCAGAAAGGACCATTCTGGGTGGGGCAGGAGGGGCC-----------CCAGGACCAGCCCTCATTGG-CAGGGCTGGCA-GGAAACCCCCCACCCC-----TGGTGAAGGAGCCCCAGCAT s panTro1.chr6_random 294230 115 - 67355074 GAGCATTGGCCGTCAGAAAGGACCATTCTGGGTGGGGCAGGAGGGGCC-----------CCAGGACCAGCCCTCATTGG-CAGGGCTGGCA-GGAAACCCCCCACCCC-----TGGTGAAGGAGCCCCAGCAT s canFam1.chrUn 89221599 84 - 91062872 GGGAATTGGCTG---GAAAGGA------------------GAGGAGCC--------------GGACCAGTCCCTGTCAGCCAGGGCTGA---------CTCCCACCCC-----CACTGGAGGAGCCTAGGTGC s danRer1.chrNA 96251906 119 + 390413307 GTGTCGCGGATATAACTGAGGACGA----GGGTGGTGAGGGAGGTGTCGCGGACATAACCGAGGAC--GCTGGTGTTGA-GGGAGGTGTCGCGGACATAACCGAGGACGAGGGTGGTGAGGGAGGT------- a score=2760.0 s hg17.chr7_random 463289 16 + 778964 CCGGTGGGCACAGTGG s panTro1.chr6_random 294345 16 - 67355074 CCGGTGGGCACAGTGG s rn3.chr19 11453186 16 + 59223525 CCTGTGGAGGCCGTGC s canFam1.chrUn 89221683 16 - 91062872 TAGGTGAGGAACGTGG s danRer1.chrNA 96252025 16 + 390413307 GTCGCGGACATAACTG a score=359.0 s hg17.chr7_random 463305 9 + 778964 -GCACAGTCC s panTro1.chr6_random 294361 9 - 67355074 -GCACAGTCC s rn3.chr19 11453202 9 + 59223525 -GTGCAGTGC s danRer1.chrNA 96252041 9 + 390413307 AGGACGGGT- a score=1144.0 s hg17.chr7_random 463314 2 + 778964 GG s panTro1.chr6_random 294370 2 - 67355074 GG s mm5.chr11 5322530 2 + 121648857 GG s rn3.chr19 11453212 2 + 59223525 TG s danRer1.chrNA 96252050 2 + 390413307 GG a score=12156.0 s hg17.chr7_random 463316 36 + 778964 TGGAGGACGTGA---------------GGGCGCGGCCGGTGGAGGACGTGT s panTro1.chr6_random 294372 36 - 67355074 TGGAGGACGTGC---------------GGGCACGGCTGGTGGAGGATGTGT s mm5.chr11 5322532 36 + 121648857 TAGAGGCTATCT---------------GGACATGACAGGTAGAGGCTATCT s rn3.chr19 11453214 36 + 59223525 TGGAGGCCGTGT---------------GTGCAGTGCCTGTGGAGGCCGTGT s canFam1.chr2 23991311 36 + 87725193 TGAAGAACCTAC---------------GGGGCAGGTGAGTGAAGTACTTGT s danRer1.chrNA 96252052 51 + 390413307 TGAGGGAGGTATTGCGGACATAACCAAGGACGAGGGTGGTGAGGGAGGTGT a score=11160.0 s hg17.chr7_random 463352 46 + 778964 GGGCGCGG-CCGGTGGAGGACGTGA---------------GGGCGCGGCCGGTGGAGGACGT s panTro1.chr6_random 294359 47 - 67355074 GGGCACAGTCCGGTGGAGGACGTGC---------------GGGCACGGCTGGTGGAGGATGT s mm5.chr11 5322568 46 + 121648857 GGACATGA-CAGGTAGAGGCTATCT---------------GGACATGACAGGTAGAGGCTAT s rn3.chr19 11453250 46 + 59223525 GAGCAGTG-CCCGTGGAGGCCGTGT---------------GTGCAGTGCCTGTGGAGGCCGT s canFam1.chr2 23991347 42 + 87725193 GGGATAGG-TGAGTGAAGTATCTGT---------------GGG----GCAGATGTGGGAAGC s danRer1.chrNA 96252118 61 + 390413307 GGACACGG-GTGGTGAGGGAGGTGTCGCGGACATAACCGAGGACGAGGGTGGTGAGGGAGGT a score=13617.0 s hg17.chr7_random 463398 106 + 778964 -------------GTGGGCGCGG-CCGGTGGAGGACGTGT---------------GGGCGCGGCCGGTGGAGGACGTGT---GG-----------GCGCGGCCGGTGGAGGACG-------TGAGGGCGCGGCCGGTGGAGGACGTGAGGGCGCGG s panTro1.chr6_random 294357 107 - 67355074 -------------GTGGGCACAGTCCGGTGGAGGACGTGC---------------GGGCACGGCTGGTGGAGGATGTGT---GG-----------GTGCGGCTTCTGGAGGACG-------TGAGGGCGCGGCTGGTGGAGGATGTGTGGGCGCGG s mm5.chr11 5322614 106 + 121648857 -------------CTGGACATGA-CAGGTAGAGGCTATCT---------------GGACATGACAGGTAGAGGCTATCT---GG-----------ACATGACAGGTAGAGGCTA-------TCTGGACATGACAGGTAGAGGCTATCTGGACATGA s rn3.chr19 11453296 106 + 59223525 -------------GTGAGCAGTG-CCCGTGGAGGCTGTGT---------------GTGCAGTGCCCGTGGAGGCTGTGT---GA-----------GCAGTGCCCGTGGAGGCTG-------TGTGAGCAGTGCCCGTGGAGGCTGTGTGTGCAGTG s canFam1.chr2 23991394 116 + 87725193 -------------TTGGGCA-GG-TGTGGGAAGTACCTGT---------------GGGATAAATGACTGAAGTACCTGT---GGGATAGATGAGTGAAGTACCTGTGGGGTAGG-------TGTGGGAAGTGCCTGTGGGACAGGTGAGTGAAGTA s danRer1.chrNA 96252179 140 + 390413307 GTCGCGGACATAACTGAGGACGG-GTAGTGAGGGAGGTGTCGCGGACACAACTGAGGACGCGGGTGTTGAGGGAGGTGTCGCGG-----------ACATAACT----GAGGACGCGGGTGTTGAGGGAGGTGTCGCGGACATAACTGAGGACGCGG a score=21546.0 s hg17.chr7_random 463504 96 + 778964 CCGGTGGAGGACG----------------TGAGGGCGCGGCCGGTGGAGGACGTGT---------------GGGCGCGGCCGGTGGAGGACGTGA---------------GGGCGCGGCCGGTGGAGGACGTGT---------------GGGCGCGG s panTro1.chr6_random 294368 96 - 67355074 CCGGTGGAGGACG----------------TGCGGGCACGGCTGGTGGAGGATGTGT---------------GGGTGCGGCTTCTGGAGGACGTGA---------------GGGCGCGGCTGGTGGAGGATGTGT---------------GGGCGCGG s mm5.chr11 5322720 96 + 121648857 CAGGTAGAGGCTA----------------TCTGGACATGACAGGTAGAGGCTATCT---------------GGACATGACAGGTAGAGGCTATCT---------------GGACATGACAGGTAGAGGCTATCT---------------GGACATGA s rn3.chr19 11453402 96 + 59223525 CCCGTGGAGGCCG----------------TGTGTGCAGTGCCTGTGGAGGCCGTGT---------------GAGCAGTGCCCGTGGAGGCTGTGT---------------GTGCAGTGCCCGTGGAGGCTGTGT---------------GTGCAGTG s canFam1.chr2 23991510 96 + 87725193 CCTGTGGGATAGA----------------TGAGTGAAGTACCTGTGGGGCAGGTAT---------------GGGAAAGGCCTGTGGGGCAGGTGT---------------GGGAAGCACCTGTGGGGCAAGTGT---------------GGAAAGTA s danRer1.chrNA 96252319 156 + 390413307 -GTGTTGAGGGAGGTGTCGCGGACATAACTGAGGACGCGGGTGGAGAGGGAGGTGTCGCGGACATAACAGAGGATGAGGGTGGTGAGGGAGATGTCGCGGACATAACCGAGGACGCGGGTGGTGAGGGAGGTGTCGCGGACATAACCGAGGACGAGG a score=60.0 s hg17.chr7_random 463600 24 + 778964 CCGGTGGAGGACGT---------------GAGGGCGCGG s mm5.chr11 5322816 24 + 121648857 CAGGTAGAGGCTAT---------------CTGGACATGA s rn3.chr19 11453498 24 + 59223525 CCCGTGGAGGCTGT---------------GTGAGCAGTG s canFam1.chr2 23991606 24 + 87725193 CCTGTGGGATAAAT---------------GAGTGAAGTA s danRer1.chrNA 96252475 39 + 390413307 GTGGTGAGGGAGGTGTCGCGGACATAACCGAGGACGCTG a score=14436.0 s hg17.chr7_random 463624 72 + 778964 ---CCGGTGGAGGACGTGTGGGCGCGGCCGGTGGAGGACGTGAGGGCGCGGCCGGTGGAGGACGT----GAGGGCGCGG s panTro1.chr6_random 294368 72 - 67355074 ---CCGGTGGAGGACGTGCGGGCACGGCTGGTGGAGGATGTGTGGGTGCGGCTTCTGGAGGACGT----GAGGGCGCGG s mm5.chr11 5322840 72 + 121648857 ---CAGGTAGAGGCTATCTGGACATGACAGGTAGAGGCTATCTGGACATGACAGGTAGAGGCTAT----CTGGACATGA s rn3.chr19 11453522 72 + 59223525 ---CCCGTGGAGGCTGTGTGAGCAGTGCCCGTGGAGGCTGTGTGTGCAGTGCCCGTGGAGGCCGT----GTGTGCAGTG s canFam1.chr2 23991630 72 + 87725193 ---CTTGTGGGATAGATGAGTGAAGCGCCTGTGGGGCAGGTGTGGGAAGTGCCTGTGGGATAGGT----GAGTGAAGTA s danRer1.chrNA 96252514 78 + 390413307 GTGTTGAGGGAGGTGTCGCGGACATAACTGAGGACGCGGGTG-GAGAGGGAGGTGTTGCGGACATAACCGGGGACGAGG a score=20988.0 s hg17.chr7_random 463696 88 + 778964 CCGGTGGAGGACGTGT---------------GGGCGCGGCCGGTGGAGGACGTGTGGGCGCGGCCGGTGGAGGACGTGAGGGCGCGGCCGGTGGAGGACGTGA---- s panTro1.chr6_random 294368 88 - 67355074 CCGGTGGAGGACGTGC---------------GGGCACGGCTGGTGGAGGATGTGTGGGTGCGGCTTCTGGAGGACGTGAGGGCGCGGCTGGTGGAGGATGTGT---- s mm5.chr11 5322912 88 + 121648857 CAGGTAGAGGCTATCT---------------GGACATGACAGGTAGAGGCTATCTGGACATGACAGGTAGAGGCTATCTGGACATGACAGGTAGAGGCTATCT---- s rn3.chr19 11453594 88 + 59223525 CCCGTGGAGGCCGTGT---------------GAGCAGTGCCTGTTGAGGCCGTGTGTGCAGTGCCCGTGGAGGCTGTGTGTGCAGTGCCCGTGGAGGCTGTGT---- s canFam1.chr2 23991702 88 + 87725193 CCTGTGGAGCAGGTGT---------------GGGAAGTGTCTGTGGGGCAGGTGTGGGAAGCACCTGTGGGATAGATGAGTGAAGGACCTGTGGGACAAGTGT---- s danRer1.chrNA 96252592 107 + 390413307 GTGGTGAGGGAGGTGTCGCGGACATAACCGAGGACGCGGGTGGTGAGGGAGGTGTCGCGGACATAACTGAGGACGGGTAGTGAGGGAGGTGTCGCGGACACAACTGA a score=7764.0 s hg17.chr7_random 463784 55 + 778964 GGGCGCGGCCGGTGGAGGACGTGA---------------GGGCGCGGCCGGTGGAGGATGTGTGGGCGCG s panTro1.chr6_random 294408 55 - 67355074 GGGTGCGGCTTCTGGAGGACGTGA---------------GGGCGCGGCTGGTGGAGGATGTGTGGGCGCG s mm5.chr11 5323000 55 + 121648857 GGACATGACAGGTAGAGGCTATCT---------------GGACATGACAGGTAGAGGCTATCTGGACATG s rn3.chr19 11453682 53 + 59223525 GAGCAGTGCCCGTGGAGGCCGTGT---------------GTGCAGTGCCCGTGGAGGCCGTGTGTGCA-- s canFam1.chr2 23991790 53 + 87725193 GAGAAGCGCCTATGGGGCAGGCGT---------------GGGAAGTGCCTGTGGGATAGGTAAGTGAA-- s danRer1.chrNA 96252699 67 + 390413307 GGACGCGGGTGTTGAGGGAGGTGTCGCGGACATAACTGAGGACGCGGGTGTTGAGGGAGGTGT-CGCG-- a score=100.0 s hg17.chr7_random 463839 1 + 778964 G s danRer1.chrNA 96252766 1 + 390413307 G a score=2901.0 s hg17.chr7_random 463839 8 + 778964 GTGCTGGT s panTro1.chr6_random 294463 8 - 67355074 GTGCTGGT s rn3.chr19 11453735 8 + 59223525 GTGCCTGT s canFam1.chr2 23991843 8 + 87725193 GTACCTGT a score=62982.0 s hg17.chr7_random 463847 701 + 778964 ACTTTTACAATGcttcgtgaacctgctgtccgtagctctgtttcacagatggggaaactgaggcctggcgattaagtggcctgctgaaatcatccagctagtaagtgtcggagctgtgatttggaccaactcctgcctccaaagctcattcacctccttacctttgcactgagctCCAGAAAACCTGAGGCTTCCCCGTCTCCCTCGCTGTGCCTTCTCTCCCCTGCTCAAAGACCGTCCTGCAGCCATCATGGAGGGAGAAGCCCTTTTTCCTAAGCTGTTCACAGGATAGTCTGGGAGGGCCTGGGAGGCAGCGGAGGAGTCCCGAGCCTTCCGGGCTCCAGGCCTGGGTTCCAGTGCCCTGGGGAGAGGCCTAGGGCTGCCAAGGGGCCCTCGGGTCCCAGCTGTGCGTCTGCCAGGAGAGGACTGTGGAGTCAGTGTTGGGGACGCTCCCTGAGCCCCAGGGGGGTGCAGGCAGGTTGCCGTCCACTCCGATCCTTCTGAGGCTCTGTGGCCCAGGCCTGCTGCTCTGACCCCTGTTTTCAGAGCAGCGATGCCACAGTCTGCCTGGGCGCGAACATGACATCTGGCCCAGATCCGGAACATTCAGGGCCAGTCTGGTCCTGAGATGTGGAAGCTGCCAGGGGAGGGCTGGGCCTTGGGGCCCACAGGGACCCCTGCTCAGCTGGTTTCCAGCCTGT s panTro1.chr6_random 294471 699 - 67355074 ACTTTTACAATGCTTCGTGAACCTGCTGTCCGTAGCTCGGtttcacagatggggaaactgaggcctggcgattaagtggcctgctgaaatcatccagctagtaagtgtcggagctgtgatttggaccaactcctgcctccaaagctcattcacctccttacctttgcactgagctCCAGAAAACCTGAGGCTTCCCCGTCTCCCTCGCTGTGCCTTCTCTCCCCTGCTCAAAGACCGTCCTGCAGCCATCATGGAGGGAGAAGCCCTTTTTCCTAAGCTGTTCACAGGATAGTCTGGGAGAGCCTGGGAGGCAGTGGAGGAGTCCCAAGCCTTCCGGGCTCCAGGCCTGGGTTCCAGTGCCCTGGGGAGAGGCCTGGGGCTGCCAAGGGGCCCTCGGGCCCCAGCTGTGCGTCTGCCAGGAGAGGACTGTGGAGTCAGTGTTGGGGGCGCTCCCTGAGCCCCAGCGGGGTACAGGCAGGTTGCCGTCCGCTCTGATCCTTCTGAGGCTCTGTGGCCCAGGCCTGCTGCTCTGACCCCTGTTTTCAGAGCAGCGATGCCACAATCTGCCCGGGCGCGAACATGACATCTGGCCCAGATCCGGAACATTCAGGGCCAGTCTGGTCCTGAAATCTGGAACCTGCCAGTGGAGGGCGGGGCCTTGGGGCCC-CAGGGAACCCTGCTCACTTGG-TTCCAGCCTGG a score=81667.0 s hg17.chr7_random 464548 966 + 778964 ggaatgtgggtcccagggtgtcagatcttgatttttccagagaagctggaagtccggttttttggtgaaatctcctaattttATTTATTGTTTTAAAttttaccttgaaaatagttcacacagaaacgttgcaaggagagtatcatgaagccctgtgtaccctttgccactcagcattttgggacgtatttgtgctgcatttgcttcatcagttctgtgttctacattcgcatactgttatttttactctttttattatttggatcatttgagagtaagttgcaggctgggtgcggtggctcacacctgtgatcccagcactttgggaggctgaggtgggcggatcgcttgaggtcaggagttcgaaaccagcctggccaacgtggtgaaaccccgactctactaaaaacacaaaaattagccagacatggtggcgggtgcctgtaatcccagctactcgggaggctgaggcaggggaatcactggaaccctgaaggcaggggttgcagtgagccaagatcgctccattgcactctagcctgggtgaaagagcgagactccaccttaaaaaaaaaaaa----------aacag----taagttgcagacaccaggaccccacgccttaaatgcttcactgggtgtctcctaagaacaagCAGGAAAATCATCACAGGCACAGCGCTCACCCTGCACGCAGCACCCTGAGCTGAGCTGACCCCCACCCAAATTCAAACTCTGTCCCAGttctttttttttg--------gagacagggtcttgctctgttgcccaggctggagtgcagtcatgagatcacagctcactgcatccccaacctgctgggctcaagtgatcctcccgccttagcctcccgagtagctgagccactgcacctggctaagttgaaaaatgttttttttt-gggccgggtgcagtggctca-cgcctgtaatcccagcactttgggaggctgaggcgggcggatcac s panTro1.chr6_random 295306 963 - 67355074 ggaatgtgggtcccagggtgtcagatcttgatttttccagagaagctggaagtccggttttttggtgaaatctcctaattttATTTATTGTTTTAAAttttaccttgaaaatagttcacacagaaacgttgcaaggagagtatcgtgaagccctctgtacccttcgccactcagcattttgggacgtatttgtgctgcatttgcttcatcagttctgtgttctacattcacatactgttattttcaccctttttattatttggatcatttgagagtaagttgcaggctgggcgcggtggctcacacctgtgatcccagcactttgggaggctgaggtgggcggatcgcttgaggtcaggagttcgagaccagcctggccaacgtggtgaaaccccgactctactaaaaacacaaaaattagccagatatggtggcgggtgcctgtaatcccagctactcgggaggctgaggcaggggaatcactggaaccctgaaggcaggggttgcagtgagccaagatcactccattgcactctagcctgggtgaaagagcgagactcctccttaaaaaaaaaaaacaaaaaaaaaaacagagagtaagttgcagacaccaggaccccacgccttaaatgcttcattgggtgtctcctaagaacaagCAGGAAAATCATCACAGGCACAGAGCTCGCCCTGCACAC-------------GAGCTGACCCCCACCCAAATTCAAACTCTGTCCCAGttctttttttttgtttttttggagacagggtcttgctctgttgcccaggctggaatgcagtcatgagatcacagctcactgcatccccaacctgctgggctcaagtgatcctcccgccttagcctcctgagtagctgagCCACTGCACCTGGCTAAGTTGAAAAATGTTTTTTTTTTGggccaggtgcagtggctcagctcctgta--------------ggcggataaggtgggaggatcac a score=67316.0 s hg17.chr7_random 465547 743 + 778964 catttgaaaccccgtctctactaaaaatacaaaaattagccgggcatggtggcaggcgcctgtaatcctagctactggggaggctgaggcaggagaatggcgtgaacctgggaggcagaggttgcagtgagctgagatcacaccattgcactgcagcctgggaggcagaactagactccctttaaaaaaacaaaatttatttattttttcttgtacagatggggtctcattatgttgcccaa-----------actcctgggctcaagcagttcccctgcctcagtctcccaaagtgctgcgattacaggtgtgagccactgtgcctggtcCAAATCCCTGAGGAGCCCAGGCAGGTGGTTTACAAGGTCTTGGGTCTGCCTGTTTCCCGTGATTACACACAGCCTCCTTACTTTTGCTGGGAAGGCCGTGAACAGGAGCTGTGTCCTCGCTGCTCCCCTCCCCGACTTTTTCCAAGGTGGGCAGCTCCTTTAAATCACCTCAGGAACCTGGGAGGCCAGGCGGGCCCAACCTGCGTCCCAGCATTCAGCTGCCTTATTAAGCACAGAGTCTGAGCTCAATAAAATCAggaccacaggcatgcaccaccacacccagctaattttgaaattttttgtagagatggggtcttgctgtattgccccggctggtcttgaactcctggcctgaagtgatcctcccgcctcggcctcccaaaatgttgggactacaggtgtaagccaccatgcccagcc s panTro1.chr6_random 296316 754 - 67355074 catttgagaccgtgtctctacgaaaaatacaaaaattagccgggcatggtggcaggcgcctgtaatcctagctactggggaggctgaggcaggagaatggcgtgaacctgggaggcagaggttgcagtgagctgagatcacaccattgcactgcagcctgggagacagaactagactccctttaaaaaaacaaaaTTTAtttatttcttcttgtagagatggggtctcattatgttgcccaagctggtctcaaactcctgtgctcaagcagttcccctgcctcagtcttccaaagtgctgtgattacaggtgtgagccactgtgcctggtcCAAATCCCTGAGGACCCAAGGCAGGTGGTTTACAAGGTCTCGGGTCTGCCTGTTTCCCGTGATTACACACAGCCTCGTTACTTTTGCTGGGAAGGCCGTGAACAGGAGCTGTGTCCTCGCTGCTCCCCTCCCTGACTTTTTCCAAGGTGGGCAGCTCCTTTAAATCACCTCAGGAACCTGGGAGGCCAGGCGGGCCCAACCTGCGTCCCAGCATTCAGCTGCCTTATTAAGCACAGAGTCTGAGCTCAATAAAATCAggaccacaggcatgcaccaccacacccagctaattttgaaattttttgtagagatggggtcttgctgtattgaccaggctggtcttgaactcctggcctgaagtgatcctcccgcctcggcctcccaaaatgttgggactacaggtgtaagccaccacgcccagcc a score=9064.0 s hg17.chr7_random 466290 39 + 778964 TGTATTACTTTTTAAATCTGAATTTGGTTTGTATAATTA s panTro1.chr6_random 297070 39 - 67355074 TGTATTACTTTTTAAATCTGAATTTGGTTTGTATAATTA s canFam1.chrUn 89224893 39 - 91062872 TGTATTACTTTTCAGATCTTAATTTTGTTTTTATAATTA a score=83459.0 s hg17.chr7_random 466329 900 + 778964 CATGAAATACTAATATGGCTCCCAAGTCGTGGGATATTACAGAAGTCTTGCCGCCTTCCTGGGTCCCGTCTCCTGTGCACAGAGCCCCTTCCTTTCAcctgtgggtgactatcttaatattttctgtgtcgatttgcctatgtgtggtttaaataagcaaatacgcacatggagtcacggcccctcctgcctgtgttagatagatgtttgcacacgagacacacttttctccacttggtgtttttcatttgacatcatgtcctggagatcacgtctttgctgtttatagcgatATCTGGGGGAGGATTTTGACAGCGTGAAGGGTTTGTTTCTGAGCGTATTCCAGAGTCGGAGCAGTGGTGGGAGCAGAGAATGAATTCACACGCATGGCGTCGGCACGACATGACTCCATCTAGCTGATCTCACTACGACCCGCGCGCCTGGCTTCCCTCTGCCCGTGATTTAGAGGAGAAAGTGGAGGCTTGCCGGAGCCGGCCGGGACCTGGTGTCTGCTTCCCGGACAGGCACTGTGTGGCCCCAGGCTCAGGAGGGCTGACGGGTGCCGGCCGTTGGGGGCTCCTTGAGGCTGTGCCTGTGGCTGGGCACACAGCCCCGTAGAGTCCCAGACCTGTTGCGGGTGTGGCCCACGGAATCCTCCTGATGGCTCTGTAGCTTGTATCACGTGTGGCTGGCAGTGCCGGGGGCTCAGGAACATCCGGTAGAGAGTGCAGCCTCCGTGGCATTTCTGTGTGAGGATGAACCGGAGTGAGCTCAGCCTCGCCCTGTGCCCTGCAGAGCAGACACGCAGCAGCATCATGAGGGCCGCAGTGTCCTGAAGGCCTGGATCCATCTGTACCAAGGCAGCCCCACCCAGTGTGCTCGGAACAAGGGAATCCCCAC s panTro1.chr6_random 297109 900 - 67355074 CATGAAATACTAATATGGCTCCCAAGTCGTGGGATATTACAGAAGTCTTGCCGCCTCCCTGGGTCCCGTCTCCTGTGCACAGAGCCCCTTCCTTTCAcctgtgggtgactattttaatattttctgtgtcgatttgcctatgtgtggtttaaataagcaaatacgcacgtagagtcacggcccctcctgcctgtgttagatagatgtttgcacacgagacacacttttctccacttggtgtttttcgtttgacatcatgtcctggagatcacgtctttgctgtttatagcgatATCTGGGGGAGGATTTTGACAGTGTGAAGGGTTTGTTTCTGAGCGTATTCCAGAGTCGGAGCAGTGGTGGGAGCAGAGAATGAATTCACACGCATGGCGTCGGCACGACATGACTCCATCGAGCTGATCTCACTACGGCCTGTGCGCCTGGCTTCCCTCTGCCCGTGATTTAGAGGAGAAAGTGGAGGCTTGCCAGAGCCGGCCGGGACCTGGTGTCTGCTTCCCGGACAGGCACTGTGTGGCCCCAGGCGCAGGAGGGCTGACGGGTGCCGGCCGTCGGGGGCTCCTTGAGGCTGTGCCTGTGGCTGGGCACACAGCGCTGTAGAGTCCCAGGCCTGTTGCGGGTGTGGCCCACAGAATCCTCCTGATGGCTCTGTAGCTTGTATCATGTGTGGCTGGCAGTGCCGGGGGCTCAGGAACATCAGGTAGAGAGTGCAGCCTCCGTGGCATTTCTGTGTGAGGATGAACCGGAGTGAGCTCAGCCTCGCCCTGTGCCCTGCAGAGCAGACACGCAGCAGCATCATGAGGGCCACAGTGTCCTGAAGGCCTGGATCCATCTGTACCAAGGTAGCCCCACCCAGTGTGCTCGGAACAAGGGAATCCCCAC a score=100.0 s hg17.chr7_random 467228 1 + 778964 C s canFam1.chrUn 89225582 1 - 91062872 C a score=6333.0 s hg17.chr7_random 467229 82 + 778964 AGAAGAGAATGGCTCCTGGGAGTACCAGTGCCATGAC----CCGGCAGCGG--GGACACTGGTGGTCT--TCA--------GACGCAGTGGCCGTCCT s panTro1.chr6_random 298009 82 - 67355074 AGAAGAGAATGGCTCCTGGGAGTACCAGTGCCATGAC----CCGGCAGCGG--GGACACTGGTGGTCT--TCA--------GACACAGTGGCCGTCCT s rn3.chr12 16088273 90 + 46649226 AAAAAAAAATCGCTCCAGAAAGT--CAGCTTCCAGACACAACTGGAAGGTG--GGA-GCTAGTGATCTGGTCACACGGGTTGCCACAGAGGACCT--- s canFam1.chrUn 89225583 75 - 91062872 AGATGAGAGTCCTCACACGGAGT-CCAGGG-----------CTGGCAGCTGGTGGA-GGTGGGGGCAG--CCG--------GCCCAGGAGGCCAAGCT a score=98849.0 s hg17.chr7_random 467311 366 + 778964 -GAGCTGAGCCA-GGGGCAGTGGGAAGACCCCCCC---G-GTGGAGCCTGCGGCTCGGGGGGCTGTGTTGG-----GGGGCAGTGGACGGGAG---AGACAGCAGCAGGAGGATTCGTCTCGAGTCC-GGGTCTCTGC-----GAAGCCGGTGCCGGCTTCGGCGAGGTGGGTGGTCTCCAC---GCCCCTTGAGGTTGAGAAGATGTGCGCCCTTCTGCAGG--GGCCGAGCTGCTGGGCGTCTGGCAGAATTTCACAGTGTTTAAAAGGA--ATGATTTTTAATGAGGCAACAGAGACACAGGGTTCACACAGACAAGGCAGAGAGAGAT-AACAGACCTTGG--CCAGCA----CCTGCTCCCCCCAGGCTCTGT-----------TGCGTGTGCGCAGGAGGGTCAC s panTro1.chr6_random 298091 367 - 67355074 -GACCTGAGCCA-GGGGCAGTGGGAAGACCCCCCC---G-GTGGAGCCTGCGGCTCGGGGGGCTCTGTTGG-----GGGGCAGTGGACGGGAG---AGACAGCAGCAGGAGGATTCGTCTCGAGTCC-GGGTCTCTGC-----GAAGCCGGTGCCGGCTTCGGCGAGCTGGGTGGTCTCCAC---GCCCCTTGAAGTTGAGAAGACGTGCGCCCTTCTGCAGG--GGCCGAGCTGCTGGGCGTCTGGCAGAATTTCACAGTGTTTAAAAGGA--ATGATTTTTAATGAGGCAACAGAGACACAGGGTTCACACAGACAAGGCAGAGAGAGATAAACAGACCTTGG--CCAGCA----CCTGCTCCCCCCAGGCTCTGT-----------TGCGTGTGCGCAGGAGGGTCAC s mm5.chr5 12735138 336 - 149219885 -GACCTGAGCCATGGAGCATGGGCAGGTGCTTCCT---G-GGAGAGCTGGCCTATCAGGAAGGAGCACTGGGCACAGGGGGAACTTCTGGGAGGGAAGAAGACAGCCAGTGGATTTGTCTGGAAGCC--AGCCTCTGT-----GCTGTTG--------TGCAGCTGGGTGGGTGGTCTCCAC------------AGTTAACAGGAGTT--GTCTGTCTGCAGGAAGGTGCTGCTGGCGGGTGTCTGCCAGAACGCAAGGATGTTT-AAAGCA--ATGAGTTTTAATTAGGCAGCCGATACACATGGTGTAGATGTATA---------------AACAGACC-CAG--CCAGCA----CCTGCTCCCTCAACATGC----------------CATGTGCACATGAGGGCCAC s rn3.chr12 16088363 329 + 46649226 ------GAGCCGTGGAGCCAGGGCAGGGGCTTCCT---GAGTAGAGCTGGCCTATCTGGAG----CATTGGGCACAGGGGAAGCTTCTGGGAA---GAGGAACAGCCAGTGGATTTGTCTCGAAGCCAGCCTCTCTGT-----GTTGTAG--------TGCAGCTGGGTGGGTGGTCTCCAC------------AGTTAACAGGAAGGCTGTCTGTCTGCAGGAAGGTGCTGCTGGCGGGTGTCTGCCAGAACGCAAGGATGTTT-AAAGCA--ATGAGTTTTAATTAGGCCGCCGATACACATGGTGTAGATGTATA---------------AACAGACC-CAG--CCAGCA----CCTGCTCCCTCAACATGC----------------TGTGTGCACACGAGGGCCAC s canFam1.chrUn 89225658 378 - 91062872 GGGCCTGAGCCC-TGGGCGGTGAGAAGAGTTTCCCCAGG-GTGTAGCTGG---------------TGGTG------GGGGCAGCTGATAGCTGGGTGGATGGCAGCGAGAGGCTTTGTCTGGGAGCT--GGTTCCTGTGGGAGGCTGGCGGTGCTCACCAC-GCTCGGGCGGTGGTCTCCAGACAGCCCATCCACATGGAAAAGATAAATGGCTTTCTGCAGG--TGTGTGTTACACGGTTGTCTGGCAGGACTCAAAATTGTTT-AAAACAGGATGATTTTTAATTAGGTAATAGGTAAACATGGCACATACTGACAGGGTCGAGAAGGATAAATAGACC-CTGTCCCAGCACCTGCCTGCTCCCTAGAGGTGCTCTCCATTACCCTGTGCATGTACACAC---GGTCCC a score=2921.0 s hg17.chr7_random 467677 11 + 778964 ACGGAGACGCT s panTro1.chr6_random 298458 11 - 67355074 ACGGAGACGCT s rn3.chr12 16088693 11 + 46649226 CCCGAGACGCT s canFam1.chrUn 89226036 9 - 91062872 --AGGGCTGCT a score=12085.0 s hg17.chr7_random 467688 110 + 778964 ----GGCTCACACGTGAGCTCGGTCTTCCTGGGGGCTACACACGGCTGTGCCAGTTGCCTTTTTCTCTTTACGGTTTCTCTTGGAGATTTTTCTAGATCGGGACACAAGGTGCT s panTro1.chr6_random 298469 110 - 67355074 ----GGCTCACACGTGAGCTCGGTCTTCCTGGGGGCTACACACGGCTGTGCCAGTTGCCTTTTTCTCTTTACGGTTTCTCTTGGAGATTTTTCTAGATCAGGACACAAGGTGCT s canFam1.chrUn 89226045 109 - 91062872 GCCGTGTCCACGTGCATGT---GTTTTCCAGTAGCACACCACTTGTTCTGCTCAGAGAGCTTTTCATGGTATAGTCACCCTTGGTGATTGTCCCAGATCAG--CGCAGAGAGCT a score=28576.0 s hg17.chr7_random 467798 309 + 778964 CTCCTCCCGCTGCtttttttttttgagacagggtcttgctgtgtcgctcaggctggagggcagtggtgccatcacagctcaatgcagcctcaatctcctgggctcaagcaatcctcccacctcagcctcccgagtagctgggactacaggtgcatggcatcatgcctggctaatttccaatttttttttttttagagatgggggtctctctatgttggccaggctggtctggaactcctgggctcaagcgaacctctcctcggactcccaaagtgcggggatgacaggcatgaggcaccgcgtctggcA s panTro1.chr6_random 298579 308 - 67355074 CTCCTCCCGCTGC-ttttttttttgagacagggtcttgctgtgtcgctcaggctggagggcagtggtgccatcacagctcaatgcagcctcaatctcctgggctcaagcaatcctcccacctcagcctcccgagtagctgggactacaggtgcatggcatcatgcctggctaatttctaattttttgttttttagagatgggggtctctgtatgttggccaggctggtctggaactcctgggctcaagcgaacctctcctcggactcccaaagtgcggggatgacaggcatgaggcaccgcgtctggcA a score=45724.0 s hg17.chr7_random 468107 367 + 778964 TCCGCCTTCTTTTGGAGTCTCACAGGA-TCCCCAGTGTGCTCGGAGGACAGTGGGCTGGGTTTGCGTGGTGGGCCTGCACACCGTGCCCCGGCTTTTCCACGCAGC--------ACCTTTGTGG-----------GGCCGTGTTTTCTCCC-CCTCGG-GCTGTGTGTG----------------------CTGGGCTGTGAGACTGGCTTCTGTCTGGGTGCTGGCTGACCCTGGAACTGGCCTGGCCAAGGTGACCGGCTTCTGCCTGTTTTCCTTCCTGAGTCATCCCA---GGTTAGGTGCTGAGTGGCTTTGGGCCGGCGACCACCCCTGTCTGGGCCTGAGGGTGCCGTATCTGTAAGGTCTATGGCATGACATGGCGAGAGGTGGGCCGCTGTCCACACCTGGCCAC s panTro1.chr6_random 298887 367 - 67355074 TCCGCCTTCTTTTGGAGTCTCACAGGA-TCCCCAGTGTGCTCGGAGGACAGTGGGCTGGGTTCGCGTGGTGGGCCTGCACACCGTGCCCCGGCTTTTCCACGCAGC--------ACCTTTGTGG-----------GGCCGTGTTTTCTCCC-CCTCGG-GCTGTGTGTG----------------------CTGGGCTGTGAGACTGGCTTCTGTCTGGGTGCTGGCTCACCCTGGAACTGGCCTGGCCAAGGTGACCGGCTTCTGCCTGTTTTCCTTCCTGAGTCATCCCA---GGTTAGGTGCTGAGTGGCTTTGGGCCGGCGACCACCCCTCTCTGGGCCTGAGGGTGCCGTATCTGTAAGGCCTGTGGCATGACATGGCGAGAGGTGGGCCGCTGTCCACACCTGGCCAC s canFam1.chrUn 89226154 379 - 91062872 TCCCCATCCTTGAGTGACTGCCTAGGACTCCCTGATGTGCATGGAGGATAGCGAGCT--GCCCCGGTGACAGGCATGCAGGTGGTTTTGTGGCTTTTGCCAGCGGCTGTGATGGGCATCTGTTGATGCCTTGGCTGGCCTTGCCTTCTCCCTTCTCAGTGCTGTGTGTGGGCATGAGGTCCGTAGACCCCCCAGAACCATGGGGTCGGCTTCAGGCACAGCTCCTGCTGGCCCTGGAATTGGCCTGGCCA--GTGACAG--------CTTTCCCACATTCTAGTTCTCTCCACTTGCCTTGGTGCTGGGGGGCTCTGGGCCAGC-AGTAGGCTTCTCAGGGACTCAGGCT------------AGG----------GGTACAGCAGAGGGTGGGCTGCCATCTGCATCTAGCCAC a score=5066.0 s hg17.chr7_random 468474 58 + 778964 TGTCAACTTCCATCTTGCTGTTTGAACAAATGCTCTTGAAAACCAGTTTGAATCAAGC s panTro1.chr6_random 299254 58 - 67355074 TGTCACCTTCCATCTTGCTGTTTGAACAACTGCTCTTGAAAACCAGTTTGAATCAAGC a score=166.0 s hg17.chr7_random 468663 16 + 778964 CCAAATACCTACTCTC s fr1.chrUn 21010321 16 + 349519338 CCAACTGATCAATTTA a score=-1105.0 s hg17.chr7_random 468679 228 + 778964 CCCTCCATGGCACAGGTCCCCACCCCAACGGGTCCAAATACCTACTCTCCCCTCCATAGCACAGGTCCCCACCCCAACAGATGCAAAT--ACCTACTCTCCCCCCCATGGCACAGGTCCCCAACC-CAACAGATCCAAATA-CCTACTCTGCCCCCCATGGCACAGGTCCCTACTCCAACGGGTCCAAATACCTACTCTCCCCCCATGGCACAGGTCCC-CAACCCAACGGGT s galGal2.chrUn 4704655 197 - 165033910 CCCCCCATAGCGCCCCACAGCGCCCCCTAGCGGCCA--------------CCTCCACCCCATAGGTCCC----------------AATGCACCACAGCGCCCCCTAGTGGCA---GTCCTCCACC-CCATAGATCCCAATGCCCCACAGCGCCCCCTAGTGGCCACCTCCC-ACCCCCATAGATCCCAATGTCAAACAGCGCCCCCTAGCGGCCACCTC-CCACCCCATAGGG s fr1.chrUn 21010337 170 + 349519338 CCCTCTGTG--------CCCCACTATAACCAGTCCAGTTAC---------CCTCTGT-------GTCCC-----------ACTATAACCAGTCCAGTTACCCTCT----------GTGCCCCACTATAACCGGTCCAGTTA-CCCTCTGTGCCCC-----------------ACTATAACCGGTCCAGTTACCCTCTGTGCCCCACTATAACCGGTCCAGTTACCCTCTGTGT a score=-95.0 s hg17.chr7_random 468907 11 + 778964 CCAA--ATACTTA s fr1.chrUn 21010507 13 + 349519338 CCCACTATAACCA a score=-4465.0 s hg17.chr7_random 468918 250 + 778964 ---CTCTTCCCCTCCATGGCACAGGTCCCCACCCCAACGGGTCCAAATACCTACTCTCCCCCCCATGGCACAGGTCCCCACCCCAACGGATCCAA----ATACCTACTCTCCCCCCCATGGCACAGGTCCCCACGCCAACGG--GTCCAAA-----------TACCTACT-CTCCCCACCAT----GGCACAGGT----------CCCCACCCCAACAGATCCAAATACCTACTCTCCCCCCACCAT--------------GGCACAGGTCCCCACCCCAACGGGTCCAAATACCTACT s galGal2.chrUn 17332509 231 - 165033910 ---CCTTCACCCTTCACGGACATACTCCTCACCCC------------------CCCACCACCCCATAGGACATCTCCTCACCCCATAGCGCCCCATAGGACATCTCCCCCCCCCCCCAATAC-CAGGTCCATGTGCTTGAGGCTGTCCATAGGGAATCGCATCACCCCCA-TACCGCCCCAT----AGGGCATCT----------CCTCACCCCCATA---CCAGCCCCATAGGGTTCTTCCTTCAC--------------CCCATAGGACATCACCTCA--------------CCCCC s fr1.chrUn 21010520 239 + 349519338 GTCCAGTTACCCTCTGTG--------TCCCACTATAACCAGTCCAGTTA---------CCCTCTGTG--------CCCCACTATAACCGGTCCAG--------TTACCCTC------------TGTGTCC---CACTATAACCAGTCCAGT-----------TACCCTCTGTGCCCCACTATAACCGGTCCAGTTACCCTCTGTGCCCCACTATAACCGGTCCAGTTACCCTCTGTGC-CCCACTATAACCGGTCCAGTTACCCTCTGTGCCCCACTATAACCAGTCCAGTTACCCTCT a score=0.0 s hg17.chr7_random 469168 17 + 778964 CTCCCCCCCATGGCACA a score=-23.0 s hg17.chr7_random 469168 2 + 778964 CT s galGal2.chrUn 17332740 2 - 165033910 CA a score=670.0 s hg17.chr7_random 469170 15 + 778964 CCCCCCCATGGCACA s galGal2.chrUn 50457798 15 - 165033910 CCCCCCTCCGGCGCT a score=-1895.0 s hg17.chr7_random 469185 127 + 778964 GTTCCCCACCACAACGGGTCCAAATACTTACTCTTCCCCTCCATGGCACAG-GTCCCCACCCCAACAGATCCAA------ATACCTACTCTCCCCCCCATGGCACAGGTCCCCACCC----CAACGGGTCCAAATACC s galGal2.chrUn 50457813 132 - 165033910 G----CCACCAACCTTTGTCCAGCGCC--ACCACTCCCATCTGGGTACCATCGTCCCAAAGCCATCAGCCCCGGCCCGGTGTCAGCAGTCCCATCTCAGTGCCACCAGCCCTGTCCCAGTGCCACCAGTCCCATTGAA s fr1.chrUn 21010759 97 + 349519338 GTGCCCCACTATAACCGGTCCAGTTAC----------CCTCTGTGCCCCACTAT----AACATAACCGGTCCAG---------------TTACCCTCTGTG------------TCCCACTATAACCGGTCCAGTTACC a score=2501.0 s hg17.chr7_random 469312 272 + 778964 TACTCTCCCCCCCATGGCACAGGTCCC------------CACCCCA-----ACGGGTCCAAATACCTACTCTCCCCCCCATGGCACAGGTCCCCACCCCAACAGATGCAAATACCTACTCTCCCCCCCATGGCACAGGTCCC------CACCCCAACGGATCCAAATACCTACTCTCCCCCGCAAGGCACAGGTCCCTACTCCAACAGGTCCAAATACCTACTCTCCCCCCCATGGCACAGGTCCCCACCCCAACGGGTCCAAATACCTACTCTCCC---CCGCAAGGCACAG-----GTCCC s galGal2.chrUn 50457945 272 - 165033910 TACCCCCACCCCAGTGCCACCAGTCCCATTGAATACCCCCACCCCAGTGCCACCAGTCCCATTGAATACCCCCACCCCAGTGCCACCAGTCCC-ACCCGAACA--------------CCCCCACCCCAGTGCCACCAGTCCCATTGAACACCCCCAC----CCCAGTGCCACCAGTCCCATTGAATACCCCCACCCCAGTGCCACCAG-TCCCATTGAATACCCCCATACCAGTGCCACCAGTCCC-----------ATCCGAATACCTCCACCCCAGTGCCACCAGTCCCATCGAATACCCC a score=-12238.0 s hg17.chr7_random 469584 699 + 778964 TACTCCA-----ACAGGTCCAAATACCTA------CTCTCCCCCCCATGGCACAGG---TCCCCACCCCAACGGGTCCAAATACC----TACTCTTCCCCTCC-ATGGCACAGG---TCCCCACCC-----CAACGGGTCCAAATACCTACTCTCCCCCACATGGCACAGGTCCC-----------------CACCCCAACGGATCCAAATACCTACTCTCCCCCCCATGGCACAGGTCCC-CACCCCAACGGGTCCAAATACCTACTCTCCCCCCCATGGCACAGGTCCCCA------CCCCAGTG-----GGTCCAAATACTTACTCTTTCCCTCCATGGCACAGGTCCACACCCCAACAGATCCAAATAC-----CTACTCTCCCCCCCATGGCACAGGTCCCCACCCCA-----ACGGGTCCAAATACCTACTCTCCCCCACATGGCACAGGTCCCCCACCCCAACGGGTCCAAATACCTA-------CTCTCCCCCGCAAGGCACAGGTCCCTAC---TCCAACAGGTCCAAATACCTACTCTCCCCCCCATGGCACAGGTCC----C------------CACCCCA-----ACGGGTCCAAATACCTACTCTTCCCTCCATGGCACAGGTCCCCAT-CCCAACGGGTCCAAATACCTACTCTCCCCCCAGTGCCACAAGTTCCCCACCCCAACGGGTCCAAATACCTACTCTCCCCCCCATGCCACAGGT------------CCCCACCCCA--------ACAGATCCAAATACCTACTCTCCACCCAGTGGCACAGGTCC----CCACCCCAAC s galGal2.chrUn 50458217 687 - 165033910 CACCCCAGTGCCACCAGTCCCATTGAATA------CCCCCACCCCAGTGCCACCAG---TCCC-ATCCGAATA--CCCCCATACC----AGTGCCACCAGTCCCATTGAATA-----CCCCCACCAAAGTGCCACCAGTCCCATTGAATACCCCCACCCCAGTGCCACCAGTCCCATCGAATACCCCCATACCAGTGCCACCAGTCCCATTGAATACCCCCATACCAGTGCCACCAGTCCC--ATCCGAATACCCCCATACCAGTGCCACCAGTCCCATTGAATA--CCCCCA------CCCCAGTGCCACCAGTCCCATTGAATACCCCCACCC-CAGTGCCACCAGTCC-CATCCGAATACCCCCATACCA-----GTGCCACCAGTCCCATTGAATA--CCCCCACCCCAGTGCCACCAGTCCCATTGAATACCCCCACCCCAGTGCCACCAGTCCC------------ATCCGAATACC---------------CCCATA------------CCAG---TGCCACCAGTCCCATTGAATACCCCCACCCCAGTGCCACCAGTCC----CATTGAATACCCCCATCCCAGTGCCACCAGTCCCATTGAATACCCCCACCCCAGTGCCACCAGTCCC------------ATCCAAATACC----CCCACCCCAGTGCCACCAGTCCC------------ATCCAAATACC----CCCATACCAGTGCCACCAGTCCCATTGAATACCCCCACCCCAGTG---CCACCAGTCCCATTGAATACCCCCACCCCAGTGCCACCAGTCC----C--------- s danRer1.chr16 28891851 709 - 29693911 TACTCC------TCAGCTCCAAATGTCCAAGGACTTTTCAGCTCCAAATGTGCAGGGACTCCTCACC--------TCCAAATGTCCAGGGACTCCTCAGCTCCAAATGTCCAGGGACTCCTTAGCT-----CCAAATGT-CAAGGGCCTACTTAGCTCCAAATGTCCAGGGACTC-----------------------CTCGGCTCCAAATGTCCAGGTACTCCTCAGCTCCAAATGTCCAGGGACTCCTCAGCTCCAAATGTCCAGGGCCTCCTCAGCTCCAAA--TGTCCAGGGACTCCTCA--------GCTCCAAATGTCCAGGGCCTCCT-TAGCTCCAAATGTCTAGGACTCCTTAGCTCCAAATTCCAGTGCTACCTCAGCTCCAAATGTCCA--GGGCCTCCTCAGCTCCAAATGTCC-AGGGACTCCTCGGCTCCAAATGTCCAGGGACTC-------CTCAGCTCCAAATGTCCAGGGACTCCTCAGCTCCAAA---------TGTCCAGGGACTCCTCAGCTCCAAGTGTCCAGGGACTCCTCAGCTCCAAATGTCCAGGGC------------CACCTCA--------GCTCCAAATGTCCAGGGCCACCTCAGCTCTAAATGTCCAGGGACTCCTCAGCTCCAAATGTCCAGGGACTCCTCAGCTCCAAATGTTCAGGGCCTCCTTAGCTCCAAATGTCCAGGGCCACCTCAGCTCCAAATGT-------------------CCAGGGACTCCTCAGCTCCAAATGTTCAGGGCCTCCTTAGCTCCAAATGTCCAGGGCCACCTCAGC a score=-207.0 s hg17.chr7_random 470283 36 + 778964 AGATGCAATTACCTACTCTCCCCCCCATAGCACAAG s galGal2.chrUn 50458904 28 - 165033910 -------ATTGAATAACCCCATCCCAGTGCCACCA- a score=-342.0 s hg17.chr7_random 470319 92 + 778964 TCCCCACCCCA-----ACAGATCCAA--------ACACCTACTCTCCCCGCCATGCCACAGGTCCCCACTC-CAACAGATCCAAATACCTACTCTCCCCTCAGTGG s galGal2.chrUn 50458932 104 - 165033910 TCCCCACCCCAGTGCCATAAGTCCCATACCGGTGCCACCCAC-CCCCACACCAGTGCACATCCCCCCATGC-CCGCTGCTTCCCCTGCCAACCCCCACCTCGGGGG s danRer1.chr16 28892577 85 - 29693911 TCCTCAGCTCA-----AAATGTCCAG-------------GGC-CTCCTCAGC--TCTAAATGTCCAAGGACTTTTCAGCTCCAAATGTCCAGGGACTCCTCAGCTC a score=16.0 s hg17.chr7_random 470411 249 + 778964 CACAGG---------TCCCCACCCCAACAGATCCAAATA--CCTACTCTCCCCATGCCTGAGCTCCCCTCCAGTCCCACGGGCACCCACAGCAGAGTCTGAG---CAAGTCTCCTGGGACACCCTCCAAGCAATGCTGA--GTCCTGGGCCCCAGCCTCCAAAGCTCC-------CCCCACCACCTGGGGCCCAGGCTCTCACC-----------CTCGGAGCGGCCACAGCAGGGGCCTTCCAGAAGCACCACCC----TGTTCATCACCCTCTTCCTTCCTAACA s danRer1.chr16 28892662 275 - 29693911 CAAATGTCCAGGGACTCCTCAGCTCAAAATGTCCAGGGACTCCTCAGCTCCAAATGTCCAGGGACTCCTCAGCTCCAAATGTC-----CAGGGACTCCTCAGCTCCAAATGTCCAGGGCCACTT------CAGCTCTAAATGTCCAGGGCCACAG-CTCTAAATGTCCAGGGACTTCTCAGCTCCAAATGTCCAGGGACTCCTCAGCTCCAAATGTCCAGGGCCACTTCAGCTCTAAATGTCCAGGGCCACAGCTCCAAATGTCCAGGGACTTCTCAGCTCCAAATG a score=1093.0 s hg17.chr7_random 470660 13 + 778964 TTTTCTGATGCTT-- s panTro1.chr6 465968 13 + 161576975 TTTTCTGATGCTT-- s danRer1.chr16 28892937 13 - 29693911 --TTCTGGGACTCCT a score=33556.0 s hg17.chr7_random 470673 370 + 778964 TCAAACAGACTGAAACCCAGAAAAGATCTAAGAGTGTTCAATGAACAGACAGGACAGAGTCCTGAAAGAGGCCCCAAGACACTCAGGAACTTAGTCCCCCCTCTTCTTTGCCTGGAAAAT--------CCCTTGTGGATGTGGCTGAAGTTTCACTAGGTCTGATGAACAAGGGCCCACCCGCGGGAAGAATCAGTCACTTCCTCAGTGGTCCAGCAGCAACTATCACACCCATGAGACAACCAGACAATAATCCACTTTTTATTGATGTGTGtttatttttacttatttttctttttgagacagggtcttgccctgtcacccaggctggagagaggagtggtgcaatcacagctcaccgtagcttcaacctcccagc s panTro1.chr6 465981 378 + 161576975 TCAAACAGACTGAAACCCAGAAAAGATCTAAGAGTGTTCAATGAACAGACAGGACAGAGTCCTGAAAGAGGCCCCAAGACACTCAGGAACTTAGTCCCCCCTCTTCTTTGCCTGGAAAATCCCACCCACCCTTGTGGATGTGGCTGAAGTTTCACTGGGTCTGATGAACAAGGGCCCACCCGCGGGAAGAATCGGTCACTTCCTCAGTGGTCTAGCAGCAACTATCACACCCATGAGACAACCGGACAATAATCCACTTTTTATTTATGTGTGtttatttttacttatttttctttttgagacagggtctcgccctgtcacccaggctggagagagcagtggtgcaatcacagctcaccgtagcttcaacctcccagc a score=37622.0 s hg17.chr7_random 471186 399 + 778964 ctcaagcaatccccctgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgtgcccggccCATTCACTTTTAAAATACTGGTCCCTACTAGAAAAGAAAAGGCTCTCGGTCAGGAGGGGAGGGGACGGCTGTGTCCCAGGGTCCTGGCCCTACACAGACCGTGGTCAAACCAGGGTGCATGTGGTGGTCTGGGCAGCAGCGgtggcccgaagcaggtggccacagctctccgtgtgtcagatcctcacctggaacttggggacagtgttaccacgtgccctcagggctgccatcaggacagcgagacagcacactcacagctctcagccacacacctgaccccaagcagaactcagggagcgtgagttaCAACTGCCTCCCGAATCGGAG s panTro1.chr6 466359 399 + 161576975 ctcaagcaatccccctgcctcagcctcccaaagtgctgggattacaggcgtgtgccaccgtgcccggcCCATTCACTTTTAAAATACTGGTCCCTACTAGAAAAGCAAAGGCTCTCGGTCAGGAGGGGAGGGGACGGCTGTGTCCCAGGGTCCTGGCCCTACACAGACCGTGGTCAAACCAGGGTGCATGTGGTGGTCTGGGCAGCAGCGGTGGCCCGAAGCCGGTGGCCACAGCTCTCCGTGTGTCAGATCCTCACCTGGAACTTGGGGACAGTGTTACCACGTGCCCTCAGGGCTGCCATCAGGACAGCGAGACAGCACACTCACAGCTCTCAGCCACACACCTGACCCCAAGCAGAACTCAGGGAGCGTGAGTTACAACAGCCTCCCGAATCGGAG a score=3816.0 s hg17.chr7_random 471585 16 + 778964 TGGCTTCCTCATTCTG s panTro1.chr6 466758 16 + 161576975 TGGCTTCCTCATTCTG s canFam1.chrUn 1861628 16 + 91062872 TGGCTTTCTTACTCTG a score=9982.0 s hg17.chr7_random 471601 68 + 778964 CAGGGAGC--AGACAGGTGGGCGTGCAGGGCCTGGTCTCAGGAGGGCTGATctt--tcccacggaaaccgtg s panTro1.chr6 466774 68 + 161576975 CAGGGAGC--AGACAGGTGGGCGTGCAGGGCCTCGTCTCAGGAGGGCTGATCTT--TCCCATGGAAACCGTG s mm5.chr5 136502516 62 + 149219885 CAGGGAGC--TGTCAGGT----ATCTAGGACC----CACAGAAAGTCTGATTTCAGCTCTAAAGAAGCCATG s canFam1.chrUn 1861644 60 + 91062872 -tgggagccgggataggt---------ggtctctgtctcggga-gactgctgct-gacccaaggaacccatg a score=846.0 s hg17.chr7_random 471669 3 + 778964 tga s panTro1.chr6 466842 3 + 161576975 TGA s canFam1.chrUn 1861704 3 + 91062872 tga a score=543.0 s hg17.chr7_random 471669 10 + 778964 tgacc-tgggc s canFam1.chrUn 1861704 11 + 91062872 tgaccttgggc a score=1751.0 s hg17.chr7_random 471672 7 + 778964 -cctgggc s panTro1.chr6 467203 7 + 161576975 -CCTGGGC s canFam1.chrUn 1861707 8 + 91062872 ccttgggc a score=12386.0 s hg17.chr7_random 471679 110 + 778964 aagccccccgctgtctc---tgagcctcag-ggtcccccccgacaagtg-----ggaacaGGGTCA-CCAAATTGCTGACAAGATGCTTTGTATTACAAGGAGCCCCATAGGGCCAGGAC s panTro1.chr6 467210 110 + 161576975 AAGCCCCCCGCTGTCTC---TGAGCCTCAG-GGTCCCCCCCAACAAGTG-----GGAACAGGGTCA-CCAAATTGCTGACAAGATGCTTCGTATTACAAGGAGCCCCATAGGGCCAGGAC s mm5.chr5 136502578 100 + 149219885 AAGCCTC---CTGTTTC-----------------CCTCCCTAACAAATGGAGGTGGGAGTGGGTCATCCACATGAATGTGAAGAAGCCACTTGTGGCATGGGATCCTCTAGAGGTAAGAC s canFam1.chrUn 1861715 95 + 91062872 cagtcac---ctgtctcttctgggcctcaattttcctgcctgacacatg-----agagCAGGGATG---------CTGGCCAG--GCCCTGTG------GAGTCCTCATGGAGATAGGGA a score=2842.0 s hg17.chr7_random 471789 25 + 778964 -CAGC-TCGACGGTTACATTCCCCTCC s panTro1.chr6 467320 25 + 161576975 -CAGC-TTGACGGTTACATTCCCCTCC s canFam1.chrUn 1861810 27 + 91062872 CAAGTGTGGGTGATCACAATCCTCCTC a score=0.0 s hg17.chr7_random 471814 14 + 778964 ATGGAGGGCCCTCC a score=1264.0 s hg17.chr7_random 471814 13 + 778964 ATGGAGGGCCCTC s panTro1.chr6 467345 13 + 161576975 ATGGAGGGCCCTC a score=300.0 s hg17.chr7_random 471827 1 + 778964 C s panTro1.chr6 467358 1 + 161576975 C s mm5.chr5 136502686 1 + 149219885 C a score=27088.0 s hg17.chr7_random 471828 178 + 778964 CCACGCAACCTTCCCTTCGCC-TGGCCTCTCTCCACAG--ACCCCC---ATCCCCAGCCAGCTGGTGAATTCCTCACAC-CCGCTGGCAGGCGACGGGGCTATTTTTAGTGACCAGGGCTCAAGAATGGAGCCATGCCAGGACCCATGGCGTCCGTCGGAATGTGAAAGCTGGT---------GCATCCCTCCT s panTro1.chr6 467359 178 + 161576975 CCACGCAACCTTCCCTTTGCC-TGGCCTCTCTCCACAG--ACCCCC---ATCCCCAGCCAGCTGGTGAATTCCTCACAC-CCGCTGGCAGGCGACGGGGCTATTTTTAGTGACCAGGGCTCAAGAATGGAGCCATGCCAGGACCCATGGCGTCCGTCGGAGTGTGAAAGCTGGC---------GCATCCCTCCT s mm5.chr5 136502687 172 + 149219885 CCAAACTGCTGACCCCTTGCT-TGGGCTTTCCTTATAGTCTCCCTC---ATCCATAGCCCACTAGTGCATCCCTAACAAGCCACTGG-ACCTAAGTGGAATATTTTTACACATTGGAGCTAATGGACAGAGACAAGGGAAAACCTAGGGTACC--------TAGAAGAACCAGG---------GCCTCTCTTCT s canFam1.chrUn 1861837 164 + 91062872 TCAGGCCACCTGCCCTTCACCTTGGCCTCTTCCTACAA-CACCCCCTCAACCCCCAGCCAACTGATTAA------GCAAATCACT---------------TAATTTTAGTGTTCGTGGCTCAAGAATGGAGTGGAGCTGGTACCTGAGGCATCCACTAGG-TCTGAAAGCCAGTGGGGCCAAGGCAT------- a score=32045.0 s hg17.chr7_random 472006 333 + 778964 TCTGGTCGCTATGTGGTCCCCGACACAGCACAGT-GGCCAGTGCTGCACCAGGGCTTAGCCTCAGGCCTGCATGAACACAGCCTCTGCCCTGGCACCCTCCATCTGAAGGACAGCCCCATTCCCTGCCCGGGGCAGTGGGCCTTCCTGCACCTTCTCTGGGCCTCGGGTCCCCATCCACATACTGGGTGCTGGAGGCAG--AGGCCACGTGCAGCATCTCAGCCCCCAGGTCTGCAGGGGCTTGTCAGTGACAACAAAACGTGAACTGGCTAGGGGTCAGAAGATGTGGTACCGGAGACCACACACCACCAAATTCCACAAGTTTCAAAATGTTAC s panTro1.chr6 467537 333 + 161576975 TCTGGTCGCTATGTGGTCCCCGACACAGCACAGT-GGCCAGTGCTGCACCAGGGCTTAGCCTCAGGCCTGCATGAACACAGCCTCTGCCCTGGCACCCTCCATCTGAAGGACAGCCCCATTCCCTGCCCCGGGCAGTGGGCCTTCCTGCACCTTCTCTGGGCCTCGGGTCCCCATCCACATACTGGGTGCTGGAGGCAG--AGGCCACGTGCAGCATCTCAGCCCCCAGGTCTGCAGGGGCTTGTCAGTGACGACAAAACGTGAACTGGCTAGGGGTCAGGAGCTGTGGCACCGGAGACCACACACCACCAAATTCCACAAGTTTCAAAATGTTAC s canFam1.chrUn 1862001 257 + 91062872 TGTGGGC-TTGGGGGGTGGAGGTGGAGGTGCTGTGGGCCAGCTCACCACCAGGG-------------------------------------GGCACCTT--------------GCAGCATGTCCTGCC--AGGACTTGGTTCTGGATGGATGCCCTCC---------ATCTCTGCTCATGTAATGGGTACAGGAAGCTGGAAGACTTTGGGTAGC-TCGAA----TCAAGTTTGTAGG-----GTTAGCTGTAGGATAATGCAGAATGGTT--GGGTCTACAGC----ATCCTGGGGACTGCACACCTCCAAATCCTAGAAGTTTTAAAGCATGAT a score=28216.0 s hg17.chr7_random 472339 318 + 778964 AGCAGCTgctgggtgtggtggctcatgcctgcaatcccaacactatgggaggctgaggccagaggatcgcttgagcccaggaggctcaagtccagcctgggcaacacagcgagactctgtctctacaaaaact-aaaaaaaaaaaatagctgggtgtggtggtgcacgcctgtggccccagctagtcgggaggctgaggcaggaggatcacttgagcccaggaagtcgaggctgcagtgagccaagatcgtgccactacactccagcctgagcaacggagcaagactgtgtctcaaaaaaacaaaaacaaaaaTCTCAG s panTro1.chr6 467870 317 + 161576975 AGCAGCTgctgggtgtggtggctcatgcctgcaatcccaacactttgggaggctgaggccagaggatcgcttgagcccaggaggctcaagtccagcctgggcaacacagcgagactccgtctctacaaaaactaaaaaaaaaaaaatagctgggtgtggtggtgcatgcctgtggccccagctactcaggaggctgaggcaggaggatcgcttgagcccaggaagtcgaggctgcagtgagccaagatcgtgccactacactccagcctgagcaacggagcaagac--cgtctcaaaaaaacaaaaacaaaaaTCTTAG a score=2592.0 s hg17.chr7_random 472657 9 + 778964 GGCACCAAA s panTro1.chr6 468187 9 + 161576975 GGCACCAAA s canFam1.chrUn 1862258 9 + 91062872 GGCACCAAA a score=5907.0 s hg17.chr7_random 472666 137 + 778964 CAGCCAGG----ACCACAGGC-----AAGATCCAC-GCAGGCCACGATCACCTGGGGGAAGTGGTAAGAAAGACCTGAGGTTCTTCTCTCCACTCACAAATCAGACAAAGCAAGAGGGCTTGTTGTCACTGTGGTAT------TAGATAGCGC s panTro1.chr6 468196 137 + 161576975 CAGCCAGG----ACCACAGAC-----AAGATCCAC-GCAGGCCATGATCACCTGGGGGAAGTGGTAAGAAAGACCTGAGGTTCTTCTCTCCACTCACAAATCAGACAAAGCAAGAGGGCTTGTTGTCACTGTGGTAT------TAGATAGCGC s rn3.chr12 30578785 98 - 46649226 CAGACAAG----GTCACAGGC-----AAGATCCACAGCAAGTACGAATGGCC--------ATGGCCAAGAACACCTGAG------CGCCACACT----------------------------TCATCACTCCCATACTCTGAGTGGATG---- s canFam1.chrUn 1862267 81 + 91062872 CCACCAAGATGCACTGCAGGCTGCTAACTGTCCAC--------------ACC---------TGGGCAACAGGGCCCAAGGTTCTCCTCCCAAAC-------------------------------TCA--GTAACAT---------------- a score=36625.0 s hg17.chr7_random 472803 137 + 778964 CAGCCCTGGAGACCCTTT--GAAACAGGCTCCACGGAGAGCTGCAAC--TGCCCCG---CAGCTCCAGG----------CGCAG--GCCACGAGACTTGTTATTAGCTGGAAAACGCTAGGCGTGTGGAAAATGACTGTTCTC-------TTAAAAAGGTTGT s panTro1.chr6 468333 137 + 161576975 CAGCCCTGGAGACCCTTT--GAAACAGGCTCCACGGAGAGCTGCAAC--TGCCCCG---CAGCTCCAGG----------CACAG--GCCACGAGACTTGTTATTAGCTGGAAAACGCTAGGCGTGTGGAAAATGACTGTTCTC-------TTTAAAAGGTTGT s mm5.chr5 136504420 147 + 149219885 CAGCTCTAGGATCCTTTTCAGAAACATTCTCCAACAACAGTGGC-AC--TACCTTG---TGGTTGCAGGGCATTCTACCCACCACCTCCATAAGAC---CCACTTGCTAGAAAAGTCTAGACATGAGGAAAACTACTGTTCTC-------TTCAAAAGGCTAT s rn3.chr12 30578883 147 - 46649226 CGGCTCTGGGGTCCTTTTCAGAAATAGTCTCCAACGACAGTAGA-AC--CACCTTG---TGGTTGCAGGGCATTCTATCTACCACCTCCATAAGAC---CTACTTGCTAGAGAAGTCTAGACATGAGGAAAACTATTGTTCTC-------TTCAAAAAGCTAT s canFam1.chrUn 1862348 122 + 91062872 AAGCCCTGGCTGCCCTTCCCAGCAAAGACTCCACAGAGAACCAAAACTGTGCCTTATTCTACTTCTAGA-----------------ACCACACGACTCTTCATCAGCTGG------------------------ATTGTTCCCAGGCACTCTTTAAAGATTGT a score=32722.0 s hg17.chr7_random 472940 238 + 778964 TGTCTTTTCCCGGCAGGTTAATGAGCTGTGTG-TGCATTCA--CGGTGGGCAAGTCAGCCCCAAGCAGCCACATCCCAGccaggtcaaagtcccagctt---ctactccaagctgggtggcccgacgcagcctgcttaacctctctctgcctcCCCTGCCAAACGGCAGCCTCGGGGGCCACGGGGGA-----------------GCTCTAGAAAGACAACATGCCCGAGGCCCATGGCCCAGGGACTGGCCATTGCATAC s panTro1.chr6 468470 238 + 161576975 TGTCTTTTCCCGGCAGGTTAATGAGCTGTGTG-TGCATTCA--CGGTGGGCAAGTCAGCCCCAAGCAGCCACATCCCAGCCAGGTCAAAGTCCCAGCTT---CTACTCCAAGCTGGGTGGCCCGACGCAGCCTGCTTAACCTCTCTCTGCCTCCCCTGCCAAACGGCAGCCTCGGGGGCCACGGGGGA-----------------GCTCTAGAAAGACAACATGCCTGAGGCCCATGGCCCAGGGACTGGCCATTGCATAC s canFam1.chrUn 1862470 253 + 91062872 CACCTTTCCCTAGGAGATTACCAAGCTGGGTGCTGCCATCATGCAGGAGGCAGGTCAGCCCAGTGCAGCCCTGTCCAGGCAGgggtgcaaacccagcttttcctagtcctagctgggggttttga-gcagcctgctcaccctctctgtgcct-cCATGCCTATCAGC-----CCAGTGATACTGGCAACAAAGCCAGTCAACCTTGGTCCAACAAGACAGTGCCCAGGAGGCCCGAGATCCAGGGACAAGTT-CAGAATAC a score=12095.0 s hg17.chr7_random 473178 96 + 778964 ATCATCTGATGCAAGCTTCAAACCCCAGGCTTCAGCCTCCGTTGAATTCAGCTTCTAAAGCCTCCCGGGCTCACGTGGCCCCTGATTTGCTAACCT s panTro1.chr6 468708 96 + 161576975 ATCATCTGATGCAAGCTTCAAACCCCAGGCTTCAGCCTCCGTTGAATTCAGCTTCTAAAGCCTCCCGGGCTCACGTGGACCCTGATTTGCTAACCT s mm5.chr5 136505012 77 + 149219885 ATCAT-TAAGGCAAGTTTCCAACTTCAGATTCCATTTCTTATCCAAGTC--------------CCTGGATACA----GCCAAAGACTCGCTAACCT s canFam1.chrUn 1862723 77 + 91062872 ATCCCATGATGCAATCCCCAGAGCCCCAGATCTACCTCCCATGAAAT-------------------AGATCCCTGTGGCCTGAAATGTATTAGCCC a score=41878.0 s hg17.chr7_random 473274 106 + 778964 CAAGGTCTCCTCTGCTGAGATCCAGCTGGGCTTTCTG-CAAATGGAAATCAAATTCTTTGCATGTTCAAGCCATTAAGCATCTCCTC-GGATGAGGCCCTGCATTTTC s panTro1.chr6 468804 106 + 161576975 CAAGGTCTCCTCTGCTGAGATCCAGCTGGGCTTTCTG-CAAATGGAAATCAAATTCTTTGCATGTTCAAGCCATTAAGCATCTCCTC-AGATGAGGCCCTGCATTTTC s mm5.chr5 136505089 93 + 149219885 TA-----------GCCCAGGGCAAACCTGACTTCATG-AAGAAGAAAACCGAA---TCTGATTCTGTAGGCCATTAAGCTTCTCTTCAAAATGAGGCTTCGTATTTTT s rn3.chr12 30579632 103 - 46649226 CAAGACTCACTCAGCCCAGGGCGAACCTGGCTTTCTG-AAGAAGAAAGTCGAG---TCTGATTCTGTAGGCCATTAAGCTTCTCTTC-AAATGAGGCTTCGGATTTTT s canFam1.chrUn 1862800 105 + 91062872 CAAGGTCTCCTCTGCCCTGGGCAGG--TGGCTTTATGTAAGATGAAAACTAAATTCCTTGCCTGTTTGAGCCATTAAGCTCCTCCTA-AAATGAGACCCTGCATTCTC a score=135515.0 s hg17.chr7_random 473380 777 + 778964 CAAAATGCTAATTTTGTTTTTTTAATGTTGCCCGAAAGGGAAGCAGAAAGTCCCAAAGCCCAAGCCAGAATGGGGAGA-----GGGGGCCGTGAAGGCTCAGAGAAGC--CAGGAGACAGCTCCCTTCAGCTGCCCGTGAATTCGGCAGAAGGGCTTGTTTTTCCCATCACCTGAGGATCCGAGCCAGTTTGTGGAAAAACAGACTGC-AGAGATACGCGGGTGGGAGGAAGAGAAACAGCGACAGATAAC---AGACAGCTGCGCAGGCCAGCGGTGC--TGCTCAAGCCAGAGGCCTG----TTTTAATTAAAGCAGCAGAGAGCTGGAGCCACTGCCAGGAAGGCCGCCTCAAGGGTGAGGTGCCCTCGCCTGT--GCCCGTCTGGCAGCTCCAGTAATGAGGTCCCC-GCCGGAGGCCCAACGCACAACA-------------------CAAACACGCACGGTGCCACCCAATTATCACGTTTCTCGGCTCCCAGGAGCTCAGCGATGCTCCCCCTACAGGCGCCCTAATCAGGGAA--AGCCGGGAAGGGACCGGGATAGAA-CCCAAGGGCCTCCACCTCACTCCCCAAGGCCTGGGACACACGCTCCAGGGACAGCCTTCATGGTCCTGGCACATCAGAGAGCTCCGGAACATGCGGGGCTGCTTCCCTGGGACACACGCTCCAGGGACAGCCTTCATGGTCCTGGCACATCAGAGAGCTCCGGAGCACGCGG--GGCTGCTTCCTGAGGCTGCTGAGGTCCCTGGCCGAGG-CGTAACTGCCCCGGGCACCCCAGGTAGGATGCG---GAATCTGCT- s mm5.chr5 136505184 626 + 149219885 AAAAATGCTAATTTTGTTTTTC-AACACTGCCTGGAAGGGAAGCACAGAGCCTCAAAGCCCTTGCCAGGCTGGAGAGAAGGAAGGGGGCCGAGAATGCGCCCAGCAGC---GGGAGCCAGCTCCCCT-GGCTGCATATGA-CTCGGCAGACAG-CGTGTTTTTCCCATCACCTGAGGCCCAGAGCCAATTTGTGCAAAAACAAGCTGC-AGAGATAGGCGGGTGGGAGGAAGTGAGACCAC-ACAGATAACAGGAGACAGCTGTGGGAGCCAG---------GCTCAGGCCAGAGGCCGGGAGATTTTAATTAGAGCAGCAGAGAACC-CAGCTACT-------------------GGGTGATG------CACCTGGCAGCCCTTCTGTTGGCTCAGGTAATGAGGCCCCCAGCCGAGGGCCCAACACATGCCG-------------------CAAACACGCA--ATGCTTCCTAATTACCACACTGCTTGGCCCCTAGG-GCTCAGTCATGCGCCCTCTTGGGGCACCC--ATCA---AA--CACCTGGGAAGGAAAAGGATGGAGCCCCAAGAGTCTCCACCTCCTTCCCAGAG-------------------------------------------CATCCCAGGGCTTCTGAG-------------TGCCCTGGGA---------------------------------------------------------------GCTGTATTTTGAGGATGCTG-GGACTCTAGCCAAGC-AGTAACTGCCCTG-----CTTCAGTGGGAGGGGTGAGGGCCTGCT- s rn3.chr12 30579736 628 - 46649226 CAAAATGCTAATTTTGTTTTTC-AACACTGCTTGGAAGGGAAGCACAGAACCTCAAAGCCCTTGCCAGGCTGGAGAGGAGGA-AGGGGTCGAGAGCGCTCCCAGCATCGAGTGGAGCCAGCTCCCTC--GGTGCATATGA-CTCGGCAGACAG-CGTGTTTTTCCCATCACCTGAGGCCCAGAGCCAATTTGTGCAAAAACAAGCTGC-AGAGATAGGCGGGTGGGAGGAAGTAAGACCAC-ACAGATAACAGGAGACAGCTGTGGGAGCCAT---------GCTCAGGCCAGAGGCCGGGAGATTTTAATTAGAGCAGCAGAGAACC-GAGCTACT-------------------GGGTGACG------CACCTGGCAGCCCTTCTGTTGGCTCAGGTAATGAGGCTCCCAGCCGAGGGCCCAACACATGCCA-------------------CAAACACGCA--GTGCTTCCTAATTACCACACTGCTTGGCCCCTAGG-GCTCAGTCATGCTCCCTCTTGGGGCACCC--ATCA---AA--CACCTGGGAAGGAGCAGGATGGAGCCCCAAGAGTCTCCATCTCCCTCCCAGGG-------------------------------------------CATCCCAGGGCTTCTGAG-------------TGC-----------------------------------------------------TCCGGGA----------GCTGTATTTTGAGGATGCTG-GGACTCTATCCAAGCAAGTAACTGTCCAG-----CTTCAGTGGGAGGGGTGAGGGTCTGCT- s canFam1.chrUn 1862905 690 + 91062872 CAAAATGCTAATTTTGTGTTTT-AGTGTTGCCTGAAAGAGAAGCAGCAAGCCCTGAAGCCAGAGCCAGGCTGGAGAGA-----AGGGGCTCAAGCAGCCCGGGGTAGC---AGGGGCCGG---------GCTGCATGTGAATCCAGCAGACGG-CGTGTTTTTCCCATCACCTGGGGACCCCAGCCAATCTGTGGAAAAACAGGCTGCTAGAGATGTGTGGGCGGGAGGCAGAA--------------------AGACAGCTGCTCAGGCCAGCGGTGCAGCGCTCCAGCCAGAGGCCCA----TTTTAATTAAAGCTGCAGAGAGCA-GGGCTGCTGCCAGGAAGACGGCCCCA-GGGTGAGATGCCCTCACCC----ACCCGTCTGGCAGCTTCAGTAATGAGGCCCCA-GCCGAGGGCCCAAAGCACAGCGCTGCTTGGACTGCCTGCACCAAATGTACACAGTGCCTCCTCATTATCAACCTTCCTGACTCCCAGGGGCACAGCGATGCT-CGTCTCCAGGCACCCTAATCG---GAGCAACCTGGGAAGGGACCCAACTGAA-CCCAAGAGCTCCCCCCTCCCTCCCTCGGGTCTGGGATGCACC--------------------------------CTCAGGGCCAAGGCA-------------CGA---------------------------------TTCTCAGCACATCTCAGGGCTCTGGAGTACCCTGCAGGCTGCCTTCTGAGGCTCCTTGGGTGCCTGAGCAGAG-AGTCACTTCCCCCACCAGCCTCAG--GAAGGACAGAAGACCTGCAT a score=72638.0 s hg17.chr7_random 474157 382 + 778964 -TCGCTCCAATAGCTGACACAAGGTGAGAAGGCTGCACCTACCACCACCCTGGG--GCCTGCCCTGGGAGCTACTCAACTCTg--cagaggggctgtgcaggtgccgtcccaggggataaggacaccccactccagcccc--agct-ggacaattgctgtgtgggtcagtgcaacaggccaagg--------ccccctctc-actgggtctcagagctctgttcagtacagtga-ggtggggacaaggtggcctcctagggatcttcctgctGACTGTGGGTGCTGGGAGGCCCGGAGCGGCCTATTCACCAACTCAGGCCCAGGGTGGAGCAGAGAATGACTC---AAGGCTACCCCAGCCTCTTTCTCAGACCAAGTACTGAGT-------GGGGCCTGACTGCGGGG s panTro1.chr6 469683 382 + 161576975 -TCGCTCCAATAGCTGACGCAAGGTGAGAAGGCTGCACCTACCACCACCCTGGG--GCCTGCCCTGGGAGCTACTCAACTCTG--CAGAGGGGCTGTGCAGGTGCCGTCCCAGGGGATAAGGACACCCCACTCCAGCCCC--AGCT-GGACAATTGCTGTGTGGGTCAGTGCAACAGGCCAAGG--------CCCCCTCTC-ACTGGGTCTCAGAGCTCTGTTCAGTACAGTGA-GGTGGGGACAAGGTGGCCTCCTAGGGATCTTCCTGCTGACTGTGGGTGCTGGGAGGCCCGGAGCGGCCTATTCACCAACTCAGGCCCAGGGTGGAGCAGAGAACGACTC---AAGGCTACCCCAGCCTCTTTCTCAGACCAAGTACTGAGT-------GGGGCCTGACTGCGGGG s mm5.chr5 136505810 360 + 149219885 -GGCCTCTGATGGA-GACACTA-ACCAGAAGGGCATACTTGCTGCCACCTGGGG-TACTTGCC--AAGAGCATGTTGACTCTGCACAGAGGGGTCATGAAGGGGCAGGTGGTGGGGA-AGTGACAACCTGGTTCAACCCCCAACTT-GGACACTTGATGCTAGTTCCAGAACCAGGGACAAAAG--------CCTTCCCTAGACTGGGCCCTGGGGAGCTCTTTTGTATAG---------------AACAGCCT-CTGGAGACCTTCCTTCTGAGCGTGGGTGTCTCAAAGTCCACAGCAGCCTGCCAACTAACTGAGGCTC-------TCCTGAAGTGGTCTC---ATGGTGACACTGGCACTTC-------CTAAGTGCTGAGTCACAGTGGGGGACTGTGTGC-AAG s rn3.chr12 30580365 337 - 46649226 -GGCCTCTGGTGGA-GACACTA-AGTAGAAGGCTGTACTTGCTGCCACCCTGGGGTACTTGCC--AAGAGCATGTTGACTCTGCACAGAGAGGTCATGAAGGGGCAGGGGGTGGGGA-GATGACATCCTGGCTCAACCCCCAACTT-GGACACTTGATGCTGGCCCTGGAGCAAGAGGCAAGAA--------CC----CTAGACTGGACCCTGGAGAGC---CCAGTCT--------TTTGGACAGAGCTGTCT-CTGGAGACCTTCCTTCTGAGTTTGGGTGTCTCAATGACCACAGCAGCCTGCCAGGTAACTGAGGCCCTGGATAGAGCTGCAATGACCT-----------------------------------TCCTGAGT-------GCTGACTCACAGCAGGA s canFam1.chrUn 1863595 345 + 91062872 TTGCTTACAGTAGCTGATGCCA-------AGG--------------ACCCAGAC--CCTCACC--TGGAGTTACTCGGCACAG--CAGTGGGGCTGTGGAGCAGC-----------ATGAAGACA-CCTGCCCCAGCCCC--AGCTAGGATGCCCACTGT--GACCTGGAGCAAGGGACAAAGGGGAAGAGCCCTTCCTTC-ACTGGGCCTTGAAACCTTCTTCTGTACACTGATGTTGGGGGATGAGTCACCTCCCACAGTCCTTTCTGCT--------GTGTCCCGAGGCCCAGAGCAGCCAGCTTACCTACTGAGGCCCAAGACAGAGCAGAGAATGATCCTGTGGAGTGGC------------CTCAGACTAAGGACTAAGA-GGGAAGGAGGCCAGGATGTGGGG a score=13928.0 s hg17.chr7_random 474539 99 + 778964 TCTGTCTGGATAGCCGGGCCAGCCTCCAAGGG--GCAAGGCACCATCCA-GAAGAAGTACCTT--CATGG--ACTCCACTGCCACACAGCCAAAGGGCC-ACAGAAA--- s panTro1.chr6 470065 99 + 161576975 TCTGTCTGGATAGCTGGGCTGGCCTCCAAGGG--GCAAGGCACCATCCA-GAAGAAGTACCTT--CATGG--ACTCCACGGCCACACAGCCAAAGGGCC-ACAGAAA--- s mm5.chr5 136506170 99 + 149219885 TGCATTTGG-CAGCAGGTCCAGTCTCTGAGGAATGAAGAGAAGAGATAG-GGAGAAGCCCACT--GATAGTTGCTGCCTGGCCACCCAGCCAAAGG----ACAGAGG--- s canFam1.chrUn 1863940 103 + 91062872 TTCATGTGGAT-GCTGGGCCTGCATCAGAGGA---CAAAGCAGTGTCCATGGAGATGCCCACTGGCATAG--CCTGCCCT-CCACACCGCCAAAGGGCTGCCAGAAAGAG a score=18071.0 s hg17.chr7_random 474638 122 + 778964 gatggtgatgacaatgaccacaacagtga-------------------------------------------------------------------tgatgatggcggtgatgatgatgatg--------gtgatgataaagatgatgatggcaatggtggt--gatgaggatggtggtggtgatgg------tgatgatgataa s panTro1.chr6 470164 106 + 161576975 GATGGTGATGACAATGACCACAACAgtga-------------------------------------------------------------------tgatgatggtggtgatgatgatgatg-----aaggtga------agatgatggtg---atggtgaa--gatgaagat----------atgg------tgatgaaaataa s mm5.chr5 136506269 99 + 149219885 GAAG--------AATAGATGGAAGTGTCA-------------------------------------------------------------------TGATGATGGCAATTATGGTGAC----------------------AAGTGACAGTGGCAACGATGGG--GCTGGAGAG-------ATGATGGCTTAGCTGTTAAGGGTAA s rn3.chr12 30581126 129 - 46649226 GGGGGTGATGGTGATGGTGGGGGTGATGG-------------------------------------------------------------------TGATGGTGGGGGTGATGGGGATGGTGGGGTGATGGTGATGGTGGGGGTGATGGGG---ATGGTGGGGTGATGGGGATGGTAGGGGTGATGG------TGGGGGTGATGG s canFam1.chrUn 1864043 192 + 91062872 gatgatgatgatgatgactatgatggtgaggagggggaggatgatggcggtgatgacagtgatgatgatgaaggttgatgatggtgatgatggttgtgatgatggtggtgatggtgatgctg-----gtggtgatgatgatggtgatggtaatgatggtgat--agtgaccatgatggtggtgatag------tgacgatgatga a score=3029.0 s hg17.chr7_random 474760 17 + 778964 ---tgatggtgatgatgaca s panTro1.chr6 470270 14 + 161576975 ---tggtgatgaagatg--- s rn3.chr12 30581266 14 - 46649226 ---TGATGGTGATGGTA--- s canFam1.chrUn 1864235 17 + 91062872 taatgatgatggtaata--- a score=40840.0 s hg17.chr7_random 474777 135 + 778964 ---------gtga-tgatggtgatggtggggatggtgatgat------------gatggtggtgataacgatgatgatggcaatggtgg----tgatgaggatggtggtggtga---------tggtgatgataatgatggtgatgatgacagtgatgatgg--tgatggtg s panTro1.chr6 470284 93 + 161576975 ---------gtga-tggtgatgatggtgaagatggtgatgat------------ggtg------------------------atggtgg----tgatggggatggtg---------------------------actatggtgatgactacgatggtggtgg--tggtggtg s mm5.chr5 136506712 139 + 149219885 ---------GAGA-TGGTGGTGCTGGTAACTGTGCTGATGCT------------GGCAATGGTAATGGGGA--ATGAAGGGGATGGTGGGGAATGAAGGAGATGGTGGGGATGA---------AGGGGATGAAGGGGATGGTGGGGATGATGGTGATGGTGGGATGATGGTG s rn3.chr12 30581289 159 - 46649226 ---------GGGA-TGGTGGGGATGGTAAGGGTGATGGGGATGGGAATGGTGGGGGTGATGGTGATAGTGGGGGTGATGGTGATGGTGGGGG-TGATGGAGATGGTAGGGGTGATGGGGATGGTGGGGATGGAGATGATGGTGATGTTGACAATGGTGATGG--TGATGGTG s canFam1.chrUn 1864252 154 + 91062872 gtgaggatggtgattggtgatgatggtgatagtggtgatggt------------gatgatgatggtggtgatgatggggacgatgatgg----tgatggtgatgatggtggtgatcttgatggtgatcatgatggtcgtgatagcaataatggtgatgatgg--tgatgatg a score=15910.0 s hg17.chr7_random 474912 62 + 778964 -----------------------gggatggtgatgatg------gtaatggtgatgactatgatggtgatgataatgatg---gtggtgatAAC--------- s panTro1.chr6 470377 62 + 161576975 -----------------------gtgatggtgatgatg------attatggtgatgactacgatggtggtggtgatgatg---atggtgatAAC--------- s mm5.chr5 136506851 59 + 149219885 -----------------------AGGACCGTATTAATGGAGT--GCAATGGAGA-------GATGGTGATACTAATGCTG---ATGGTGATGAC--------- s rn3.chr12 30582358 65 - 46649226 -----------------------GGGATGGTGGGGATG------GTGATGGAAATGGTGATGGTGGGGATGATGGGGATGGGAATGGTGATGGT--------- s canFam1.chrUn 1864406 100 + 91062872 ttgatggatgatggttgtgatggaagatggtagtgatgatgttgataatgatgaaggtgacgatggagatgatgatgggg---atggtgggaatggggataat a score=3210.0 s hg17.chr7_random 474974 41 + 778964 AGT-ACACacatagatattcttgctttatattctcacaacaa s panTro1.chr6 470439 41 + 161576975 AGT-ACACACATAGATATTCCTGCtttatattctcacaacaa s mm5.chr5 136506910 28 + 149219885 TCTAACAATCATACACATATGGGCTTT--------------G s canFam1.chrUn 1864506 41 + 91062872 gat-ATACCtataaacattaccacattctatctttactgcaa a score=85439.0 s hg17.chr7_random 475015 568 + 778964 -cctcaaagtaggttttattatcttcatttgacacctgaggaaactgaggctcagagaatgttaTTACTTA--TAAATGACAT-CCACAACTCTCTCCTTCCAAAAGATGTTTTAAACACACCTTAAATTCTGTG--------------------------------------------------------------------------------------GTATCTGAGTGA----------------------GATTGTGTGTGCATGACTGTGT-GCATA--------------------------------------GG---------CGTGCCTGGGAATA---AGACCACTCCAG----CCCA-----ACACC-TGT----------------GTGATGGGAACTCCTG----GTCCTGTCTCACC--------------CCTGAGCTGTCTCCCTGCAGCTGCAGTTCACTACAGGACAGTATGGACCCCGCTCACTGGCAATGCCTAAATCACCCATTCT-CAATCTTC-CTTCACCATGCAGGCAGGGTAGCGGCAGGTGCaggtgatgtgtccttaca---ggggagg--gagcacaggcttaggtgcccaaga-actcgagctcaaaccctagctctgctcctgaggagttgtggggccttggaca-agGACAGGGAAGGAAACTGAGGCTGTGAGGTTGACACTATGCCTCTCACAG-ATCCTGTGCAAAGGCCCAGGGAAACCCTTCGATCAAGGCCAACTAGCAATACCAC s panTro1.chr6 470480 569 + 161576975 -cctcaaagtaggttttattatcttcatttgacacctgaggaaactgaggctcagagaatgttaTTACTTA--TAAATGACAT-CCACAACTCTCTCCTTCCAAAAGATGTTTTAAACACACCTTAAATTCTGTG--------------------------------------------------------------------------------------GTATCTGAGTGA----------------------GATTGTGTGTGCATGACTGTGT-GCATA--------------------------------------GG---------CGTGCCTGGGAATA---AGACCCCTCCAG----CCCA-----ACACC-TGT----------------GTGATGGGAACTCCTG----GTCCTGTCTCACC--------------CCTGAGCTGTCTCCCTGCAGCTGCAGTTCACCACAGGACACTATGGATCCTGCTCACTGGCAATGCCTAAATCACCCATTCT-CAATCTTC-CTTCACCATGCAGGCAGGGTAGCAGCAGGTGCAGGTGATGTGTCCTCAca---ggggagg--gagcacaggcttaggtgcccaaga-actcaagctcgaaccctagctctgctcctgaggagttgtggggccttggaca-agGACAGGGAAGGAAACTGAGGCTGTGAGGTTGACACTATGCCTCTCACAGGATCCTGTGCAAAGGCCCAGGGAAACCCTTCGATCAAGGCCAACTAGCAATACCAC s mm5.chr5 136506938 488 + 149219885 -CTGTATAGTAGGTCTTCTTACCCTCACTTGAC----------ATTGAAGCCCAGAGAATGTCATCAC--A--GTCACAATGT-ACACAACTCTCTCC-----AAAGACATTTT-AACACACCCGAAGTT-------------------------------------------------------------------------------------------GTATCTAAGTGATCATATAC------------ACAAGTGTGCTTGCACCATTATCTAGCTCA--------------------------------------GGACCCCATCACCCACCAGGGCACATGGAAGTCACCTCAG----GACACAAGGACCCC-CAC----------------ATACTGAGTGTT------------------------------------CTGAGGATGCTCCCAGCAGC----------------------AGGAGCCAGCTCTCTTG-GCTGCACATATCCAGAATGCT-CAGTGTTCTCATCCCTATGCAGGT--GGTAGAGAGAAGATGACATGACCTGTCATCAT------GGAGA--CACGACAGGCTAGGATG-----------------------CTGGCTCTGCTTCTGATGTGTGTTGTTGCCTTCGGCAGAGGACAAGAAAGGAAACTGAAGCCACAAGTTCAA------------------ACCTTGGGCAAAAGCCCAGAGAG--CCTTCAATAGGTGCCGACTAGGAACACAAC s rn3.chr12 30582658 466 - 46649226 -CCATATAGTAGGTCTTATTACCCTCATTTGAC----------ATTGAAGCCCAGAGAGGGTCATCAC--A--GTCACAGTGT----------------------AGACATTTT-AACACACCTGAAGT--------------------------------------------------------------------------------------------GTGTCTAAGTGATGATATAC------------ACATGTGTGCATGCACCATTGTCT-AGATC--------------------------------------AG---------CGCTCTT----ATG---GGGCTTCTCTCGGGACCCCA-----ACACC-CACCACCAAGTCACCTCAGGATACAGGGACCCCAC----GTACTGAGTGTT----------------CCGAGGGGGCTCCCTCCAAC----------------------AGGAGCCAGCTCCCTCG-GCTGCATATACCCACAATGCT-CAGTGTCCTCATCCCTGTGCAGGT--GATAG----AGGATGATCTGACCTGTCACCAT------GGAG----------------------------------------ACGCTGGCTCTGCTTCTGATGCACTGTGTTGCCTTCGGCAGAGGACAAGAAAGGAAACTGAAGCCACAAATTTAT------------------ACCCTGGGCAAAAGCCCAGAGAG--CCTTCAACGGGAGCCAACTAGAAACACAAC s canFam1.chrUn 1864547 679 + 91062872 ccctcaaagtagattttattcctctgatttgacacttgaagaaactgagtcccaaaggatgtaattacataacttAATGATATGATTCAACTGTATCCTTCCAAAAGATATTTT-AACACACATACAATTCTGTAACacacgtatatgtatgtgcatgtgtaagtgtgcactgtgtgtataggcatgtacgtgtgtgACCATGTACATATATGCACtgtatgtgtgtgagtgtgcctgtgtctgtacatggatgcatatatatatgcatg--tgtgt-gcatatgtgcattggtatgtgtgtttgggtgtgcatgtgtttggg---------tgtgcatgtgtTTA---ACGCATCTCTGG----CCTG-----GTGCAGTGT----------------GTTCAGGGGTGTCCTGCTCTTTCCTGTCGCATCCCAGACTTGTGAGGCCAGAGCCCCATCCCTGCAGTCCCAGTTCACCCCAGGACACCTGGGGGCCTCCCGACAAC-CATGCCTGGATCACCCACTCTCCCGTATTC-CCTCCACTTGCAGGT---------------GCATCTGACCTACTATGGGAGTGGGGGAGGCagagcacaggctctgaggccccagagactcatgccagaaccctggctttgctg-tgacaagtgctgtggcctcgggcaGAAGACAGGGAGGGAAAT-----------------------------------------------GGGCCAGAGAAAGCCTCTGGTAACTGCCACCTGGAAGTGCCAC a score=2600.0 s hg17.chr7_random 475583 9 + 778964 CATCCTAGA s panTro1.chr6 471049 9 + 161576975 CATCCTAGA s rn3.chr12 30583124 9 - 46649226 TGTCTTAGA s canFam1.chrUn 1865226 9 + 91062872 TGTTCCAGG a score=7396.0 s hg17.chr7_random 475592 51 + 778964 -AGGACAGGCAGGCGGTCTGGGGGAGTTGCAGCCTCCCTCACAAC---CACGTTG s panTro1.chr6 471058 51 + 161576975 -AAGACAGGCAGGCGGTCTGGGGGAGTTGCAGCCTCCCTCACAAC---CATGTTG s canFam1.chrUn 1865235 55 + 91062872 AGAAAGAGCTCAGCAGTTTGCAGGGTGAGCAGCCTTCCCCACAGCATGCATGTTG a score=819.0 s hg17.chr7_random 475643 4 + 778964 ------------CACT s panTro1.chr6 471109 4 + 161576975 ------------CACT s rn3.chr12 30583346 4 - 46649226 ------------CACT s canFam1.chrUn 1865290 16 + 91062872 CTGTGTTGCATTCATT a score=167243.0 s hg17.chr7_random 475647 684 + 778964 ATCTTCCTTTAAATCAAAGGTCTTA----AA-CATAATTTCTACCCTTCTCCAAGCTTACGTATCTCTCGCACAACCTTATGTA--TCTCCCACACTGTTACGGATCGACAAGAGCAAAGTCACACAGCCTG----TGATGATGGGGATATCTGTCTTGAACCTGAACTTGTACGGAGGGGTCATTAGGCCAGCAGGTGTGCAAACCCTGCAGGTGGATGCATCTGCAAAGGATTCTCTGCCGCACTCTTCCT---AAGCGGGGAAGCAGAGAGAAGAAGAGCAGGCAGCCTCAAAGTCAGGGGTGTGCCAGACGCCCTGTAAACTTGGAAGGAATTTGGCTTTGCTC--GCCAAACCACAGCTGAGCAGAGGCAAAGCTATGAAGCTCAGCTTCTAGTAAACTGGAAAAAGCAAA---CTATCTGGATGCTGCACAGGGGAGACATCACGTGAAAGGTCCAGAGACAATCCCTCCCCTGCCCACTCCCTCTGGAACCGGTTTCCT-GAGCCATCAGCCTGTTTCTTTAGAGACCGTGGCCAGAAAAAGGAGCCCACTGGGGCTTCGATATGGAAAGTGAGTTTTCCTGTGTGCAAAACAAAAGAGCTGA--AACCGACACACACACCCTGTGCAAAAGCTTCCTTTTCAAGCCAGCCTTACAAAGAGGAGTT-TTTAAGCCAACCATCTGCTTCCTCTGTTTCTTG s panTro1.chr6 471113 683 + 161576975 ATCTTCCTTTAAATCAAAG-TCTTA----AA-CATAATTTCTACCCTTCTCCAAGCTTACGTATCTCTCGCACAACCTTACGTA--TCTCCCACACTGTTACCAATCGACAAGAGCAAAGTCACACAGCCTG----TGATGATGGGGATATCTGTCTTGAACCTGAACTTGGACAGAGGGGTCATTAGGCCAGCAGGTGTGCACACCCTGCAGGTGGATGCATCTGCAAAGGATTCTCTGCCGCACTCTTCCT---AAGCGGGGAAGCAGAGAGAAGAAGAGCAGGCAGCCTCAAAGTCAGGGGTGTGCCAGACGCCCTGTAAACTTGGAAGGAATTTGGCTTTGCTC--GCCAAACCACAGCTGAGCAGAGGCAAAGCTATGAAGCTCAGCTTCTAGTAAACTGGAAAAAGCAAA---CTATCTGGATGCTGCACAGGGGAGACATCACGTGAAAGGTCCAGAGACAATCCCTCCCCTGCCCACTCCCTCTGGAACCGGTTTCCT-GAGCCATCAGCCTGTTTCTTTAGAGACCGTGGCCAGAAAAAGGAGCCCATTGGGGCTTCGATATGGAAAGTGAGTTTTCCTGTGTGCAAAACAAAAGAGCTGA--AACCGACACACACGCCCTGTGCAAAAGCTTCCTTTTCAAGCCAGCCTTACAAAGAGGAGTT-TTTAAGCCAACCATCTGCTTCCTCTGTTTCTTC s mm5.chr5 136507749 603 + 149219885 ATCCTCTTCTAAATAAAAGGATTTATCTCAA-CATCATCTTTCTCCTT-TCCAAGC--AAGTGTCTTAGGAAAAGTCCAAGATA-------------------AACTGACAAGAACAAAATTGCTCATCCCC----TGACAATGAG----CTTGTCCT-------AATCTGCACAGAGAGGCCATCAGGAAAGGAGGTGCGCTCACGCTGCAAGCAGACCCCACAGGGAAGGGCG-GCTGTTGCTCGCTTCTTTTCACCCCTGTCAGGAGAGAGGAACCCAGGGCTAGGGCTCAAAG-------------------CCTAAAGTCTTGGAA---------CTCTGCTCCTGCCAAACCGCATC------AAGCCAGAGCTGCTGAGCCTGGCTTCGAGAACACAGGGAACGGGGAAGGCAGTTCTGGAAGCTGCACAGAG----CAGCACGTGAGAGAT-CAGAGATGAAGCCT-CCCTGCCTGTTCCCTCAGGACC--ACTTCCT-GAGCCAGC-----------------TCCCTGGCCAGGAATCAGAGTGTACTGTG---TACATATGAAAAGTGAGTTTTCCTCTGTGGAAAACAATAGGCCTGA--AGCAGACACACACGCCATGCGTGAACCCTTGCTTCCCAGGACAGCCTTGCAAAGAAATGTCATTTAGGTTAGCTATCTGCTTCCTCCACTTCATG s rn3.chr12 30583351 600 - 46649226 ATCCTCTTCTTTATAAAAGGATTTAACTCAA-CATCGTCTTTCTGCTT-TCCAAAC--AAGTGTCTTTGGTGCAGCTGAGAAAA--ACTCCAAGATA------AACTGACAAGAGCAAAATTGCCCAGAGCAAAATTAACAATGAG----CTTGTCCTAAACCGGAATCTAGAGGGAGAGGCCGTCAGGAAAGGAGGAACGCTCACCTTGCAAAAACGCCCAT-AGGGAAGGGCG-AGCACGGCTCACTTCAT------TCCAGAAGTGGAGAGAGA--------GGAGCCCCAAGGCCAGG-----GCCCAAAG-CCTCTAGCCTTGGAA---------CTCTGCTTCTGCCAAACCATA-CTGAGC-CAGACAGAGCTGCTAAGCCTGGCTTCCAGAACACCGGGAAGG--------CAGTCTCGAGGCCGCACAGAGCAG-CATCCTATGAGAGAT-TGGGGAGT-------CCCTGCGAGTTCCCTCAGGACC--ACTTCCTGGAGCCAGG-----------------TCCATGGCCAGGAACCAGAGTGCACTGTG---TTCATATGAAAAGCAAGTTTTCCTCTGTGGAAAACAATAGACCCGA--AGCAGACACACA-GCCGTGCA-GGAACCCTGCTTCCCAGGTCAGCTTTGCAAA---------------CCAGCCATCTGCTTCCTCGACTTCTCG s canFam1.chrUn 1865306 616 + 91062872 ACCTTCTTCTGAACAAAGGAGCCTAACAAAGCCCTCACCTCTTAACTCGCCAAAGC--A-----CTTCCACAGAAACTGAAGGAGAGATGCCATCCTA-----ACCTGATAAGGGCAAGACCACCCA-CCTG----CTACCCCAGGGTCACCTGTCTCACACCTGAGCTTGGCAGGAGGGGCT-TTAAACACAGAGGCGGGCTCACCCCACAAATGCATTTGCTTGCAGAGG----AGTGTTGTTTCCTCCAC------CTACACAGGAGGCAG----------------CTCTGGGTCGAG-GCGTGCCA----------------GGAAAGA------ATGTGCCC----CAAACCACAGC----------CCAAGCTGCTGAGTCCAGCTTCTACTAAACCGGAAAAAGCAAA---GAATTTGGATGCCATGCAGGGGA--CATCAAGTCAAAGGTCAAGAGACAACGTC--TCCGGCCCGCTGTCTCTGCAGCCCACTTCCT-GAACCATCGGCCTGTTTCTTTAGAGGCTGGAGCCAGAAAAAGGAGCCCTGGAGGGTTTCAATATGGAAAGTGAGTTTTCCTGAGGGCAGAACAA-GGACCTGAAGAGCAGACACATACCCCCTACATGATCGCGCCCTTCCCCAGCCAGCCTCGCCAAGAGCAATT-TTCAATCCAACCATCTGCTTCCTGAACTTCTTG a score=3355.0 s hg17.chr7_random 476331 11 + 778964 TCCGCGTAGCT s panTro1.chr6 471796 11 + 161576975 TCCGCGTAGCT s mm5.chr5 136508352 11 + 149219885 GTCACTTGGCT s canFam1.chrUn 1865922 11 + 91062872 TCCACCTGGCT a score=81273.0 s hg17.chr7_random 476342 597 + 778964 CTCGGATCCAGAGGGGTCAGAGATGGAGGGCG-CATGTCGTTCT-GATTCTCAGGGCCAAGGGCACAGGACCC-------AGCA----CTGGACATAAACAGCTGGGATGGCCCAGAGATATCATTTGACTCAGCTCACACTCAGGGTCCAGGCTGGCCCTAAAATAAGAGCTTTACTGAACCTACCTAGAGCCTGGGAGCTGGGGAGGAGCCCAGAAAGGATTTGAGGAGTTTAGCTGAAACGCAGTTGCCACCAAGAGGGCACAGA------------AAGGAATGGGAGGCTCTGAGTTCGGTCAGGCTGGAAGGGAAGCacaatctgtgg-ttcctcaaaaagctaaacatggaactaccatatgacccggcaattccatccatcagcatctgcccaggagactcaaacagacacctgcacacccatgttcacagcagcactaatcacaataaccaaaaggtggaaacaacccaagtgtccatcagcagacaaatggatacacaaatggggtg----tggccgtggagtggaatattactcggccctgaaaaaggaagagagcattgatacatgctatgctgtggatgcaccttgaaaacactgtgctcagtgaaagagccca s panTro1.chr6 471807 596 + 161576975 CTCGGATCCAGAGGGGTCAGAGATGGAGGGCG-CATGTCGCTCT-GATTCTGAGGGCCAAGGGCACAGGATCC-------AGCA----CTGGACATAAACAGCTGGGATGGCCCAGAGATATCATTTGACTCAGCTCACACTCAGGGTCCAGGCTGGCCCTAAAATAAGAGCTTTACTGAACTTACCTAGAGCCTGGGAGCTGGGGAGGAGCCCAGAAAGGATTTGAGGAGTTTAGCTGAAACGCAGTTGCCACCAAGAGGGCACAGA------------AAGGAATGGGAGGCCCTGAGTTCAGTCAGGCTGGAAGGGAAGCacaatctgtgg-ttcctcaaaaagctaaacatggaactaccatacgacccggcaattccatccatcagcatctgcccaggagactcaaacagacacctgcacacccatgttcacagcagcactaatcacaataaccaaaaggtggaaacaaccc-agtgtccatcagcagacaaatggatacacaaatggggtg----tggccgtggagcggaatattactcggccctgaaaaaggaagagagcattgatacatgctatgctgtggatgcaccttgaaaacactgtgctcagtgaaagggccca s canFam1.chrUn 1865933 583 + 91062872 CCTGGATCCAGAAAAGTCCGAGGCGGTGGGAACCATGTGATTCTGGAAACTTGGGGCCAAGGGCACAGGACCCCAACACAAACACTTCCTGGACACGCGCAGCTGGGACAA-CCAGAGCCAGCACGTACGTCAGCTCACCCTCGGG--CCACATTGGCCCAGGACCAGGAGCTTTACTGAACCAGCC-ACTACTCAGGAGCTGGGAAGGGGCCACAAGAGGGTGTGAAGGACATGGCTCAAACACAGCTGCCCC------AGCTCAAATGCAGCTGCCCTATACAAGGGGAAGCTGGAAGCTCAGAGGGGCCAGAAGGGAAGCTGAATCTGTTGCCTCCTCAGAAAG--GAGGGGTGATCTGCCACA---------AAAGCCATTCCTAGGTGTGCACCCCAAAGGCTCAG------------acacccgtgttcgtgggaatgtt-ttgacaacaaccaaaaggtgggagcattcccagtgtccctcaaccagtaagtagataaacacgttgtgtgggcatacccccacaacagag---accccgctcctccaaaaggagggaatcac-------tgccataacatgggtacaccctgaggataccacgtgcagagacatatgcca a score=49894.0 s hg17.chr7_random 476939 566 + 778964 tcacgaaaggtcatatatcatggttcatttaagtcccataatgacttacatgaaatatttagaataggcaagctcatagaaagagaaagtaaattggggctatcaggggcccaggagggggtgataggactgactgctgaataagtgtggggcttccatttggaatga-tgaaaattttggaaacaaagagtggtgatggcagcacaccattgtgaatgtaactaatgccactgaattaaacacttaaaaatggctaaaatgggctgggtgcagtggctcacacctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatgctgaaaccccatctctactaaaaatacaaaaattagccaggtgtggtggcgcacacctgtaatctcagctactcgggaggctgaggcaggagaatcacttgaacccaggagacggaggttgcagtgagccgagatagcgccactgcactccagcctgggtgacagagtgagac------tccatctcaaaaaaaaagaaaaggttaaaat s panTro1.chr6 472403 568 + 161576975 tcacgaaaggtcatatatcacggttcatttaagtcccataatgacttacatgaaatatttagaataggcaagctcatagaaagagaaagtagattggggttatcaggggcccaggagggggtgataggactgactgctgaataagtgtggggcttccatttggaatgattaaaaatattggaaacaaagagtggtgatggcagcacaccattgtgaatgtaactaatgccactgaattaaacacttaaaaatggctaaAATGggctgggtgcggtggctcacgcccataatcccagcactttgggaggctgaggtgggtggatcacttgaggtcaggagttcaagaccagcctggccaacatgctgaaaccccatctctactaaaaatacaaaaattagccaggtgtggtggcgcacacctgtaatctcagctactcgggaggctgaggcaggagaattgcttgaacccaggagacggaggttgcagtgagccgagacagcgccactgcactccagcctgggtgacagagtgagacaaaatgtc-----aaaaaaaaaagaaaaGGTTAAAAT a score=17793.0 s hg17.chr7_random 477906 210 + 778964 GTTTGGATGTAAACATTGCACATGCAGGGAGGACAGATGTTGGAAATGAGATGGAGCTACAAGTTCATGAAACCCCACTTCATATTCCTCCTCCCTAGGCACCCAGGGAATGACT--GCCCAGCATCCCTGCAACCACGCCAGGCCAGGGGACCAGTCCATGGCCCATGCTCACCTGTGACATGTGACAATTCTGGGCTGAGGTGGTGACAA s panTro1.chr6 473372 211 + 161576975 GTTTGGATGTAAACCTTGCCAAT-CAGGGAGGACAGATGTTGGAAATGAGATGGAGCCACAATTTCATGAAACCCCACTTCATATTCCTCCTCCCTAGGCACCCAGGGAATGACTCTGCCCAGCGTCCCTGCAACCACGCCAGGCCAGGGGACCAGTCCATGGCCCATGCTCACCTGTGACATATGACAATTCTGGGCTGAGGCGGTGACAA a score=4507.0 s hg17.chr7_random 478116 80 + 778964 GCCTGTGCCTCC----ATGAACATGG-----AAGCCCGTGTTGATAGCTGAGCCCA-AGAGCTAGGCGGCCTGGGCCTCTGAGCTCCCCC s panTro1.chr6 473583 80 + 161576975 GCCTGTGCCTCC----ATGAACATGG-----AAGCCCGTGTTGATAGCTGAGCCCA-AGAGCTAGGCGGCCTGGGCCTCTGAGCTCCCCC s fr1.chrUn 316898801 83 + 349519338 ACACAGGCCCCCGCAGAGGGGCGCGGCTGACGGGACGGCGCCGACACAGGCCCCCGCAGAGGGGTTCAGCTCAGGGGACGGCG------- a score=39528.0 s hg17.chr7_random 478196 320 + 778964 ATGCCACAGCGTCCAGCAGAGGGGCTCAGGACCGAGGACGGCCTC----TGAGCTCCC---------------------------CGACGCCACAGCATCCAGCAGAGGGGCTCAGGACCGAGGACGGCCTCCGAGCTCCCCCATGCCACAGCATCCAGCAGAGGGGCTCAGGACCGAGGACGGCCTC----CGAGCTCCC---------------------------CCACGCCACAGCATCCAGCAGAGGGACTCAGGACCCAGGACGGCCTCCGAGCTCCCCCACGCCACAGCATCCAGCAGAGGGACTCAGGACCGAGGACGGCCCCCGAGCTCCCCCACGCCACGGCATCCGGCAGAGGGGCTCAGGACCGAAGACG s panTro1.chr6 473663 320 + 161576975 ACGCCACAGCGTCCAGCAGAGGGGCTCAGGACCGAGGATGGCCTC----CGAGCTCCC---------------------------CCATGCCACAGCATCCAGCAGAGGGGCTCAGGACCGAGGACGGCCTCCGAGCTCCCCCATGCCACAGCATCCGGCAGAGGGGCTCAGGACCGAGGACGGCCTC----TGAGCTCCC---------------------------CCATGCCACGGCATCCGGCAGAGGGGCTCAGGACCGAGGACGGCCTCTGAGCTCCCCCACGCCACAGCATCCAGCAGAGGGGCTCAGGACCGAGGATGGCCTCTGAGCTCCCCCATGCCACAGCATCCAGCAGAGGGGCTCAGGACCGAGGACG s fr1.chrUn 316898581 343 + 349519338 ACGACACAGGCCCCCGCAGAGGGGTTCAGCTGAGGGGACGGCGCCGACACAGGCTCCCCGCAGAGGGGCGCGGCTCAGGTGACGGCGACGACACAGGCCCCCGCAGAGGGGCTCGGCTGACGGGACGG-------------CGACGACACAGGCCCCCGCAGAGGGGTTCAGCTCAGGGGACGGCGACGACACAGGCTCCCCGCAGAGGGGCTCGGCTGACGGGACGGCGACGACACAGGCCCCCGCAGAGGGGCGCGGCTGACGGGACGGCGC-------------CGACACAGGCCCCCGCAGAGGGGTTCAGCTCAGGGGACGG-------------CGACGACACAGGCCCCCGCAGAGGGGTTCAGCTCAGGGGACG a score=6199.0 s hg17.chr7_random 478516 57 + 778964 GCCTCCGAGCTCTCCCACGCCGTGGCATCCGGCAGCGGGGCTCCGGACCGAGGACAG s panTro1.chr6 473927 57 + 161576975 GCCTCTGAGCTCCCCCATGCCACAGCATCCAGCAGAGGGGCTCAGGACCGAGGACGG s fr1.chrUn 316898924 44 + 349519338 -------------GCGACGACACAGGCCCCCGCAGAGGGGTTCAGCTCAGGGGACGG a score=0.0 s hg17.chr7_random 478573 13 + 778964 CCTCCGAGCTCCC a score=200.0 s hg17.chr7_random 478573 2 + 778964 CC s panTro1.chr6 473984 2 + 161576975 CC a score=942.0 s hg17.chr7_random 478575 11 + 778964 TCCGAGCTCCC s panTro1.chr6 473874 11 + 161576975 TCTGAGCTCCC a score=5987.0 s hg17.chr7_random 478586 40 + 778964 CCATGCCACGGCGTCAGGCAGAGGGGCTCAGGACCGAGGA s panTro1.chr6 473885 40 + 161576975 CCACGCCACAGCATCCAGCAGAGGGGCTCAGGACCGAGGA s fr1.chrUn 316898968 38 + 349519338 CGACGACACAGGCCCCCGCAGAGGGGTTCAG--CTGAGGG a score=990.0 s hg17.chr7_random 478626 39 + 778964 CACGGCATCAGCCCCAGATACCGGAGATGATCGTGGCTG s fr1.chrUn 316899006 39 + 349519338 GACGGCGACGACACAGGCCCCCGCAGAGGGGCGCGGCTG a score=621.0 s hg17.chr7_random 478688 86 + 778964 GCCAGAGCTTTCCCGACCTCGGCGCTCTCAGTGACCCCAGGCTCATCAGCCAGAAGATGGGGACACAGATTTCGCGTGAGTGGTTC s fr1.chrUn 316898829 82 + 349519338 GACGGGACGGCGCCGACACAGGCCCCCGCAGAGGGGTTCAGCTCAGGGGAC----GGCGACGACACAGGCCCCCGCAGAGGGGTTC a score=2361.0 s hg17.chr7_random 478823 132 + 778964 CTCAGGTTGAGGACTTGAGGGTTTCTAAAGGGCCCTGAACACCACCCACCCTCCCCAACCCACCGCTTCTCCGTCCCTCCGTTGCCTTCATCGAGCTCCGCAGAATTCAGATTCTGAAGGTGGGCGTGGATG s canFam1.chrUn 1866696 118 + 91062872 CTCTGGACCATGACCTGAGGAGCCC----AGGCCTTGGTGAACACAAGCCCCCACCGGTCACTCGCTCTGCTGATC-----TTGGCCACATC-----CATCAGAATTCAGGCTCTGAAGAAGGGTGTGGCTG a score=75721.0 s hg17.chr7_random 479374 840 + 778964 gcccaggttAAGACACATATTTGAATCCCAGGAGGACATTGAGATCTCC-ATTTTCCTGGCTACCCTCCAAGTGATGCCTTGTTCCCTGTGGCCCCAGCACCCCCACAGGCAGCAGGTTCCTGCTGAAATGAACAAAGCTGTCCTACCATGTGTTCACCAGCTCTCCCCTGCCCCAGCCATGCCTGGAACGGGCCCCAGGCCCTTTGCTGCAGCTGTGCCATGCCTGGAACAGCCGTGCTGGCTCTCACCTTTCTGCCCATCCTGAATGAAGCCATCCCACTCTATGACGTGCAGGCCTCTCtcaatgtccttcaccacacaccatctctaaaaatgtatgtgcttcatgactgtgtgctgcctgctccccggaagagccagccccatgaggacagcacccgttccctacccccactgtgttcccagaaccctgcacggagcctggcacacaatgaatcctctggaagtatttgtcgTCTTA----------AATTCTGTGGAACCGAAtttg---tttttttttttaagatggagtctcgctctgtcgcccaggctggagtgcagtggcatgatctcggctcattgcaatctccgccacccgggttcaagcaattctcccgcctcagtctcctgagtagctgggattacaggcatgcgcaactgtgctcagcctaatttttgtatttttagtagagatggggattcaccatattggccaggctggtcttgaactcctggcctcaagtgatctgcccacctcagcctcccagagtgttgggattacaggcatgagccaccgcacccggccTTGTTGAACCAATTTTGAATTCAGGTGCAAAGCTGTGCTCCACC s panTro1.chr6 473983 852 + 161576975 GCCCAGGTTAAGACACATATT-GAATCCCAGGAGGATAT-GAGATCTCCCATTTTCCTGGCTACCCTCCAAGTGATGCCTTGTTCCCTGTGGCCCCAGCACCCCTACAGGCAGCAGGTTCCTGCTGAAATGAACAAAGCTGTCCTACCATGTGTTCACCAGCTCTCCCCTGCCCCAGCCATGCCTGGAACGGGCCCCAGGCCCTTTGCTGCAGCTGTGCCATGCCTGGAACAGCCGTGCTGGCTCTCACCTTTCTGCCCATCCTGAATGAAGCCATCCCACTCTATGACGTGCAGGTCTCTCTCAATGTCCTTCACCACACACCATCTCTAAAAATGTATGTGCTTCATGACTGTGTGctgcctgctccccggaaaagccagccccatgaggacagcacccgttccccacccccactgtgttcccagaaccctgcacggagcctggcacacaatgaatgctctggaagtatttgtcgTCTTAAATTCTGTGGAATTCTGTGGAACCGAAtttgttttttttttttttaagacggagtctcgctctgtcgcccaggctggagtgcagtggcatgatctcggctcattgcaatctccaccacccgggttcaagcaattctcccgcctcagtctcctgagtagctgggattacaggcgtgcgctactgtgctcagcctaatttttgtatttttagtagagatggggattcaccatgttggccaggctggtctggaactcctggcctcaagtgatctgcccacctcagcctcccagactgctgggattacaggcatgagccaccgcacccggccTTGTTGAACCAATTTTGAATTCAGGTGCAAAGCTGTGCTCCACC a score=13513.0 s hg17.chr7_random 480214 90 + 778964 CACCGCACTGTTCCCACATGTGGGAATATTTGAGCCAGAAAAAGAAAACGTTGGATGGTCTTCATTACTGTTGCTAGAAATAAAAATAAT s panTro1.chr6 474835 90 + 161576975 CACTGCACTGTTCCCACATGTGGGAATATTTGAGCCAGAAAAGGAAAACGTTGGATGGTCATCATTACCGTTGCTAGAAATAAAGATAAT s canFam1.chrUn 1866970 88 + 91062872 CATGGTGTTGCTCTTAC-TCTGGGAATGCGTGAGCAAGAAGTAGTTCACA-TGGATCATCATCATTGTCATTGCCATAAATAAAAATGAT a score=5362.0 s hg17.chr7_random 480304 57 + 778964 agccaggcgcgatggctcatgtctataatcctagcactttggggggctgaggcagga s panTro1.chr6 474925 57 + 161576975 agccaggcgcgatggctcatgtctataatcctagcactttggggggccgaggcagga a score=36729.0 s hg17.chr7_random 480361 447 + 778964 ggatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaatatacaaaaattagctgggtgtggtggcacatgcctataatcccagctacttggaaggctgaggcaggggaatcgcttgaacccggaggcggacattgcagtgagccaagattgcaagactgcactcccgcctgggcaagaagagtgaaactccatctcaaaaaaagaaaaaataaTTTTTTTTT-aattagccaggcatggtggtgcacacctgcagtcccagttattcaggaagttgaggtaggagaatcacttgagcacggaaggccgaggctgcagtgagctatgatggtgccactgcactccagcctgggtgagagagtaaggccttgtctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaCACACACACAC s panTro1.chr6 475876 425 + 161576975 ggatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaatatacaaaaattagctgggtgtggcggcacacgcctataatcccagctacttggaaggctgaggcaggggaatcgcttgaacccggaggcggacactgcagtgagccaagattgcacgactgcactccagcctgggcaacaagagtgaaagtccctctcaaaaaaagaaaaaataattttttttttaattagccaggcatggtggtgcacacctgcagtcccagttattcaggaagtcgaggtaggagaatcacttgagcacagaaggtcgaggctgcagtgggctatgatggtggcactgcactccagcctgggtgagagagtaaggccttgtctttaaaaaaaaaaaaaaaa-----------------------CACAC a score=33248.0 s hg17.chr7_random 480808 246 + 778964 AGAATGGACAGCTGGTCTGTGTGGCCAGCAGCTGTGGACCAGG---GACCTCCCGCTTCAGGGCT--GACTCTGTCTGCAAAGAGGGAGCTGCAGAGGCTCT----AGCAAGGCGCAG--CTGGGAC------CAGAAAGGGCTCTCTCTTCCTCAGGGTCCCTTC-----GTGATCTTCCAAACTGAATTTTCAACCGGGTGAACGTAATATCCGTTCAAAAACGACATTTCAA-TTGCATTGTA-AATTGATGTTTAAATTCAAGTTA s panTro1.chr6 476301 245 + 161576975 AGAATGGACGGCTGGTCTGTGTGGCCAGCAGCTGTGGACCAGG---GACCTCCCGCTTCAGGGCT--GACTCTGTCTGCAAAGAGGGAGCTGCAGAGGCTCT----AGCAAGGCGCGG--CTGGGAC------CAGAAAGGGCTCTCTCCTCCTCAGGGTCCCTTC-----GTGATCTTCCAAACTGAATTTTCAACCGG-TGAACGTAATATCCGTTCAAAAATGACATTTCAA-TTGCATTGTA-AATTGATGTTTAAATTCAAGTTA s rn3.chr12 30585047 225 - 46649226 AGAGGAGACAGCCTGTCTGTGTGGCGATCCACCATGGGATAGGT--GACTTCCTACCTAAGGAAC---------------AGAAGGGGTCCATAGAGGTGCT----CATAAGACCCAC--CCAGAGTG-----AAGCAAGGG--------TCCCGGGGGAGTCTCCAGACAGTTATCTATC-------ACCTTAAACCATGTGAATGCCACATTCATTCAAAGTCAAATCTCAAA-AGATGCTGTC-AATGGATGCATAAACTCAGGTTA s canFam1.chrUn 1867485 252 + 91062872 AGAATGGAGAGA-GGTCTATGTGGCT----GCTGTGGGGAACATCCGACCTCCTGCCTGAAGGTGAGGAGTCAGTCCTCAGAAAGGTAACTGCAGAGGGACCTAGGGACAAGCCAGGGTCCTGGGGCTGTCTCCAGACAGTTCACCTTT-CACTCTGGACTCCT-------GGCACCTTTTAA-----ATTTCAATCCATGTGAATGCACCATCTAGTCAGAAGCCAGGTCTAAATTTGGACTGAGTTTTTGATGTTTATATTCAAGTTA a score=0.0 s hg17.chr7_random 481054 12 + 778964 AAATAAATTCAA a score=819.0 s hg17.chr7_random 481054 3 + 778964 AAA s panTro1.chr6 476546 3 + 161576975 AAA s rn3.chr12 30585272 3 - 46649226 AAA a score=828.0 s hg17.chr7_random 481057 9 + 778964 TAAATTCAA s panTro1.chr6 476549 9 + 161576975 TAAATTCAA a score=1812.0 s hg17.chr7_random 481066 9 + 778964 GTTAAAATA s panTro1.chr6 476558 9 + 161576975 GTTAAAATA s canFam1.chrUn 1867737 9 + 91062872 GTAAAGATA a score=28560.0 s hg17.chr7_random 481075 314 + 778964 GTCTTCAGCTCagccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggagagtggatcacaaggtcaggagatcgagaccatcctggccaacacagtgaaaccccatctctactaaaaatacaaaaaattagccaggcatggtggcgggcgcctgtagtcccagctacctgggaggctgaggcaggagaatgacgtgaacctgtgaggcagagcttgcagtgagccgagatcgccccactgcactgaagcctgggcaacagagtgagactccatctcaaaaaaaaaaaaaaaTAGTCTT s panTro1.chr6 476567 314 + 161576975 GTCTTCAGCTCggccgggcacggtggctcatgcctgtaatcccagcactttgggaggccgaggagagtggatcacaaggtcaggagatcgagaccatcctggccaacacggtgaaaccccatctctactacaaatacaaaaaattagccagacgtggtggcgggcgcctgtagtcccagctacctgggaggctgaggcaggagaatgacgtgaacccgggaggcggagcttgcagtgagccgagatcaccccactgcactgaagcctgggcaacagagtgagactccatctcaaaaaaaaaaaaaaaTAGTCTT a score=23969.0 s hg17.chr7_random 481389 172 + 778964 CAGCTCTTCAGT-ATCTGACTCCTCCTGGTGACCAGGTTCACCACTGCCAGGCAGACACCTCTGTGCACgtatcccagggccgctgtgagcaagtacagcaggtcctgaaacaacagaaacgtatcgtctctgcagttctgggg-ccagaagtccagatccaggatcagcaggt s panTro1.chr6 476881 172 + 161576975 CAGCTCTTCAGT-ATCTGACTCCTCTTGGTGACCAGGTTCACCACTGCCAGGCAGACACCTCTGTGCGCgtatcccagggctgctgtgagcaagtacagcaggtcctgaaacaacagaaacgtatcgtctctgcagttctgggg-ccagaagtccagaaccaggatcagcaggt s canFam1.chrUn 1867746 141 + 91062872 CAACTCCTGAATCATGTGGTCCCACCTGGTGACGGTGGCCATAACCACCAGGTGGACACCCCTGT-------------------------------CATGAGGACTGAGAACAGTGGAAGCATATGGTCTC--CAGTTCTGGAGCCCAGGAGCCCAGAATCAGCACCAGCAGAC a score=32536.0 s hg17.chr7_random 481561 348 + 778964 ggaaatcaaggtgccacaggaccacgccctccagaggccccgggcaggcccctcctcgcctcttcAGGTGGCTGCGGCCCTCCTCGGCGTGTGCCACATCTCACCAACTCCTGCCTTGTGTTGCATGGCCTCTTCCCCTTCTGTGTGTGGCATCTcctcctgcctccccttagaaggcacaagtgatggcatcagggccctcctgggaaacccagggccacccgcccacctcgaatctcacttcatcacatctgcaaagtccctctctgccactcaagatgacacatccaggtcccagagactaggtcgtgggtatcctggggggccTGGACACCTCCCAGGATGGAG s panTro1.chr6 477053 348 + 161576975 ggaaatcaaggtgctacaggaccacgccctccagaggccccgggcaggccccccctcgcctcttcAGGTGGCTGCGGCCCTCCTCGGCCTGTGCCACATCTCACCAactcctgccttgcgttgcatggcctcttccccttctgtgtgtggcatctcctcctgcctccccttagaaggcacaagtgatggcatcagggccctcctgggaaacccagggccacccgcccacctcgaatctcacttcatcacatctgcaaagtccctctctgccactcaagatgacacatccaggtcccagagaataagtcatgggtatcctggggggccTGGACACCTCCCAGGATGGAG a score=5424.0 s hg17.chr7_random 481909 35 + 778964 TAGCCATGCCCAGCTACTCCAGCCACACCCAGCTA s panTro1.chr6 477401 35 + 161576975 TAGCCATGCCCAGCTACTCCAGCCACACCCAGCTA s mm5.chrX 35579895 35 - 160634946 TACCCATAGCTGGCTTCCTTACCCACAGCTGGCTT a score=3835.0 s hg17.chr7_random 481944 35 + 778964 CTCCAACCATGTCCAG--------GCTAATCCTGAATTCC--AGC s panTro1.chr6 477436 35 + 161576975 CTCCAACCATGTCCAG--------GCTAATCCTGAATTCC--AGC s mm5.chrX 35579930 45 - 160634946 CCTTACCCATAGCTGGCTTCCTTACCCACTGCTGACTTCCTTACC s canFam1.chr29 2880589 26 - 44859674 CCCCATCCAGGTCCAG-----------------GAGCCCC--ATC a score=53115.0 s hg17.chr7_random 481979 361 + 778964 CACACCCAGCTACTCTAGTCACATCCAGCTACTCTAGTCATGCCCAGCAACTCCATCCATGCTTAGATACTCCAGCCATGCCCAGCTATTCCAGCCACACCCAGCTACTCTAGCCACATCTAACTACTCC-------------AGTCATGCCCAGCT------ACTCCATGTATACCTAGCTACTCTAGCCACACCCAGATATTCCAGCCATGTCCAGCTACTCCAACCAAACCCAGCTATTCCAGCCACACTCAGCTATTCGAGTAGGCAGCCATGCCCA------GCTACTCCAGCCAAACCCAGCTATTCCAGCCACACCCAGCTACTCTGGCCACATC-TAGCTACTCCATCCATGCCTAGCTACTCT-------------AGCCACACCCAGCTA s panTro1.chr6 477471 342 + 161576975 CACACCCAGCTACTCTAGTCA-------------------TGCCCAGCTACTCCGTCCATGCTTAGATACTCCAGCCATGCCCAGCTATTCCAGCCACAGCCAGCTACTCTAGCCACATCTAACTACTCC-------------AGTCATGCCCAGCT------ACTCCATGTATACCTAGCTACTCTAGCCACACCCAGATATTCCAGCCATGTCCAGCTACTCCAACCAAACCCAGCTATTCCAGCCACACTCAGCTATTCGAGTAGGCAGCCATGCCCA------GCTACTCCAGCCAAACCCAGCTATTCCAGCCACACCCAGCTACTCTGGCCGCATC-TAGCTACTCCATCCATGCCTAGCTACTCT-------------AGCCACACCCAGCTA s mm5.chrX 35579975 354 - 160634946 CACTGCTGGCTTCCTTACCCACTGCTGGCTTCCTTACCCATAGCTGGCTTCCTTACCCACTGCTGGATTCCTTACCCACTGCTGGCTTCCCTACCCACAGCTGGCTTCCTTATCCACTGCTGACTTCCTT-------------ACCCACAGCTGGCT------TCCTTACCCATAGCTGGCTTCCTTAGCCACAGCTGGCTTCCTTACCCACTGCTGGCTTCCTTACCCACAGCTGGCTTCCTTACCCAC-------------TGCTGGCCTCCTTACCCACTGCTGGCTTCGTTACCCATAGCTGGCTTCCTTACCCACAGCTAGCTTCCTTACCCACAGC-TGGCTTCCTTACCCATTGCTGGCTTCCTT-------------ACCCACAGCTGGCTT s rn3.chr1 29880794 353 + 268121971 CATCCTCAGCCTCTCTACACTCCTCCAGCCTCTCCACACTCCCCCAGCTTCTCCACACTCTTCCAGCTTCTCCACATTCCCCAAGTCTCTCCACACTCCCCCAGCTTCTCCACACTTCTCCAGCTTCTCC-------------ACACTCTTCCAGCT------TCTCCACACTCCCCCAGCCTCTCCACACTCCCCCAGGTTCTCCATACTCCCCCAGCCTCTCCACACTCCCCCAGGTTCTCCATACTCCCCCAGCTTCTC-------CATACTCCCCCA------GCCTCTCCATACTCCCCCAGCTTCTCCATACTCCCCCAGCTTCTCCATACTCCCC-CAGCTTCTCCATAC-TCCCCAGCCTCTCC-------------ATACTCCCCCAGCCA s canFam1.chr29 2880615 386 - 44859674 GAGGTCCAGGAACCACATCCAGATCCGGGAACCCCATCCAGGTCCAGGAGCCCCATCCGGGTCCAGGAGCCCCATCCGAGTCCGGGAGCCCCATCCAGGTCCGGGAGCCCCATCCGGGTCCAGGAGCCCCATCAGGGTCCAGGAGCCCTATCCAGGTCTGAGAGCCCCATCCAGGTCTAGGAGCCCCATCCAGATCCAGGAGCCCCAGCCA-GTCCAGGAGCCCCATCCGGGTCCAGGAGTGCCATCCAGATCCAGGAGCCC-------CATCCAGGTCCA------GGAGCCCCATCCGAGTCCAGGAGCCCCATCCAGGTCCAGGGGCCCCAGTCAGGTCTTGGGAGCTCCATCCGGGTCCAGGAGCCCCATCAGGGTCCAGGAGCCCCATCTAAGTC a score=15481.0 s hg17.chr7_random 482340 165 + 778964 CTCCAGCAACACCCAGCTATTCCAGCCACACCCAGCTACTCTAGC-------------------------------------CACATCTAGCC----ACTCGTCA---TGCCCAGCT----AACTCTCT---CCATGCCT-AGCTACTCTAGCTACACCCAGATACTCCAGCCACACACAGCTATCCCAGCCATCCTCAGCTACTCTAACCACTGCT s panTro1.chr6 477813 165 + 161576975 CTCCAGCAACACCCAGTTATTCCAGCCACACCCAGCTACTCTAGC-------------------------------------CACATCTAGCC----ACTCGTCA---TGCCCAGCT----AACTCTAT---CCATGCCT-AGCTACTCTAGCTACACCCAGATACTCCAGCCACACACAGCTATCCCAGCCATCCTCAGCTACTCTAACCACTGCT s mm5.chrX 35580329 166 - 160634946 CCTTACCCACAGCTGGCCTCCTTACCCACAGCTGGCTTCCTTACC-------------------------------------CACTGCTGGC------TTCCTTA---CCCACAGCT----GGCCTCCTTACCCACAGCT-GGCTTCCTTACCCACTGCTGGCTTCCTTACCCACAGCTGGCTTCCTTACCCACTGCTGGCTTCCTTACCCACTGCT s rn3.chr3 60501916 193 + 170969371 CTACAGCACCCCTCAGCTTCTACAGCACCCCTCAGCTTCTATAGCACCCCTCAGTTTATATACCACCCCTCAGCTTCTACAGCACCCCTCACC----ACCCCTCAGCTTCTACAGC-----ACCCCTCA---CCACCCCTCAGCTTCTATAGC-ACCCTCAGCTTCTACAG-CACCCTCAGCT----------TCTACAGCACCCCTCACCACCCCT s canFam1.chr29 2881001 173 - 44859674 CAGGAGCATCATCTAGGTCCAGGAGTCCCATCCAGTTCCTGGAGC-------------------------------------CCTATCCAGGTCTGAGAGCCCCA---TCCAGGTCTTGGGAGCCCCAT---CCAGATCC-AGGAGCCCCAGCCAGGTCCAGGAGCCCCATCTGGGTCCAGGAGCCCCATCCAGGTCCAGGGGCCCCAGCCAGTACC a score=1797.0 s hg17.chr7_random 482505 12 + 778964 CAACCACAGAAG s panTro1.chr6 477978 12 + 161576975 CAACCACAGAAG s rn3.chr3 60502109 12 + 170969371 CAGCTTCTATAG s canFam1.chr29 2881174 12 - 44859674 CTAGCACCGAGG a score=573.0 s hg17.chr7_random 482517 2 + 778964 CA s panTro1.chr6 477990 2 + 161576975 CA s rn3.chr3 60502121 2 + 170969371 CA a score=72103.0 s hg17.chr7_random 482519 790 + 778964 ACAGGTGTTCCTGCTTGGGGTAACTGGGCACCCTGGACCCAAAGTATCCAGCCTGAACCAGCCACATGCTCTGGATAAGATAGGGTATTTCAGCATGATGTGAGTGGCTGGGTGCCAAGACCCTTGAAGGCCACTCCTCTGCACAGCCCCTGCCACCCTTTCTGAGTGAGATTCCAGCAAAATGTATCAAAAGCCTGTTAAAAACACACACACCAACACCCATCGGGATCTTCACAGGCCAATCTCTGACCCAGCAACCTGAATACCAGGAGTCTCCTGCCTAACCACAGCATCACTACTCACGGAAACATCGGAGCACGGAGAAATCAGAAGCCTCCCACGTGACCTTGGCAAAGGCAGCAGTTCATAAACTCTGATTCATTCTTACAATGGAACGCTGTGCAGATACGCACAACAATTAGATCTGTACTTATATGGAAGGACTTCCTAGACCCATCACCCCATCACTGGCGAGGAGCACAGCAGAGAACAATGCGTCTAGTGTGTTCCCAGGGTCCCCACCTGCACTCACGGGCACACGCCTGCAAACACACAGGGCGGCTGGAGCCCCCACCAGACCACCACACCGTTGCCCTCCGGGAGGGGGAGAAAAAGACACTTTCTCTTTGTATTTTATACATATGGAGGTCATTTAGATTTTATATAGGACTAGTATCAAAATATGCTCAGTTAATGTAATAAAGAATTATaatttgtcaaaaaattgttttaaaagagagaattttcaatatgttacacatcctttgatcacatcaaggaatttatctca s panTro1.chr6 477992 790 + 161576975 ACAGGTGTTCCTGCTTGGGGTAACTGGGCACCCTGCACCCAAAGTATCCAGCCTGAACCAGCCACATGCTCTGGATAAGATAGGGTATTTCAGCATGATGTGAGTGGCTGGGTGCCAAGGCCCTTGAAGGCCACTCCTCTGCATAGCCCCTGCCACCCCTTCTGAGTGAGATTCCAGCAAAATGTATCAAAAGCCTGTTAAAAACACGCACACCAGCACCCATCAGGATCTTCACAGGCCAATCTCTGACCCAGCAACCTGAATACCAGGAGTCTCCTGCCTAACCACAGCGTCACTACTCACAGAAACATCGTAGCACGGAGAAATCAGAAGCCTCCCACGTGACCTTGGCAAAGGCAGCAGTTCATAAACTCTGATTCATTCTTACAATGGAACGCTGTGCAGATACGCACAACAATTAGATCTGTACTTATACGAAAGGACTTCCTAGACCCATCACCCCATCACCGGCGAGGAGCACAGCAGAGAACAGCGCGTCTAGTGTGTTCCCAGGGTCCCCACCTGCACTCACGGGCACACGCCTGCAAACACACAGGGCGGCTGGAGCCCCCACCAGACCACCACACCGTTGCCCTCCGGGAGGGGGAGAAACAGACACTTTCTCTTTGTATTTTATACATATGGAGGTAATTTAGATTTTATATAGGACTAGTATCAAAATATGCTCAGTTAATCTAATAAAGAATTATAATTTGTCAAAAAATTGTTTTAAAAGAGAGAATTTTCAATATGTGACACATCCTTTGATCACATCAACGAATTTATCTCA a score=9476.0 s hg17.chr7_random 483309 70 + 778964 aagaaagaaacgaacaagtactccaagatgaaaacacaagg-----atgaccacccaa----tgttcataaagttaaaa s panTro1.chr6 478782 70 + 161576975 AAGAAAGAAACGAACAAGTACTCCAAGATGAAAACACAAGG-----ATGACCACCCAA----TGTTCATAAAGTTAAAA s canFam1.chrUn 1867887 78 + 91062872 AAGAAAGAGACAGACAAGGAC-CAAAAATGAGCACACCAGACAGCCATGGTTGTCGAAATGCTGTTTACCATGAAAAAA a score=29451.0 s hg17.chr7_random 483379 315 + 778964 atgcaggccgggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcatgaggtcaggagttcgagaccagcctggccaacatggtgaaaacccatctctactaaaaatgcaaaaattagccgggcgtggtgtcgggatcctgtaatcccagatactcaggaggctgaggcaggagaatcgcttgaacccaggtggcggaggttgaagtgagccaagatcatacgactgcagtccagcctgggcaacagagcaagactctgtctaaaataataataataatagagatttaaaaaa s panTro1.chr6 478852 315 + 161576975 ATGCAggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggtggatcatgaggtcaggagttcgagaccagcctggccaacatggtgaaaacccatctctactaaaaatgcaaaaattagccgggcgtggtggcgggatcctgtaatcccagatactcaggaggctgaggcaggagaatcgcttgaacccaggtggcggaggttgaagtgagccaagatcatacgactgcagtccagcctgggcaacagagcaagactctgtctAAACTAATAATAATAATAGAGATTTAAAAAA a score=14283.0 s hg17.chr7_random 483694 139 + 778964 tgcaaacagccGCAGTAGGAAAACA----------GCTAATTCACATAGAAATTGACAGCACAAGACAACTGCAGCACGCTAACTGGCATGGAAAGGTGTTGAGGACGCCCCGAGTATGGGAAAACAGGGTAGAATGAGATGC-----TGTTAC s panTro1.chr6 479167 138 + 161576975 TGCAAACAGCCGCAGTAGGAAAACA----------GCTAATTCACATAGAAATTGACAGCAC-AGACAACTGCAGCAGGCTTACTGGCATGGAAAGGTGTTGAGGACGCCCCGAGTATGAGAAAACAGGGTAGAATGAGATGC-----TGTTAC s canFam1.chrUn 1867965 146 + 91062872 TGCAAGCAGTC-CAAGAGGGAAATAAGGGTTTTATGACAACTC-TACAGAAACTGATGCTAC-AAACCAC--CAAAATCCTTCCTGACA--GAAGGACATCCATGGCCCAGTCACTGTGATAAAGT-GTGTAGAATGCGATCCCATAGTGTGAC a score=0.0 s hg17.chr7_random 483833 2 + 778964 CG a score=200.0 s hg17.chr7_random 483833 2 + 778964 CG s panTro1.chr6 479305 2 + 161576975 CG a score=64032.0 s hg17.chr7_random 483835 587 + 778964 ACGGGATC----TGTGCACAAGGGCAATCCTTAACGCCTGTCCCCCAAATATCCCCAAGGATCATCCCTAGGCATCAGATGGAGACATTTTTGCTTTCAATCTTTTCAAAATTTTCCAATTTTTCCAATTATGTCTATGATCAACATCCCCACA-CATGGCGTCCAAGCCCCTTCACGCTCAGC-----CCTCTCCCTGAATAACCCTGACCTCCTCTGTCCCCTCACTGCGACCCTGCAGACCTC----ATCTGCTGTCACCTCCTGCCTCAGGCCTCCGAGCTCCCGGCACAGGCAGGAGCCGCAGGAAAGGTACATCCCGGCCCCATCTCCCCAACGAGGCTGTGAGCTTAGCAACGGCAAGGTATATCCATGCATGCGGAAGAGGCCGGAACACGAAGCCCACGGTAATCACACCA-------CCT---GTGCCTGCCTAGGTATAGCGCGCGGGGGAACCGCAGATCCAGACCCCCTATTTGAGGAAGGCAGCCGGGCCTTCCCAGAGCAGGGACTCAGCTCGGCAGCAGGGCAGGTGCACGCAGCATAGTATTTCGGGAAGCCACCCCTGCGTGGTGAGCCCACGTTTCCTGAGAGCTGTGACAC s panTro1.chr6 482499 587 + 161576975 ACGGGATC----TGTGCACAAGGGCAATCCTTAACGCCTGTCCCCCAAATATCCCCAAGGATCATCCCTAGGCATCAGATGGAGACATTTTTGCTTTCAATCTTTTCAAAATTTTCCAATTTTTCCAATTATGTCTATGATGAACATCCCCACA-CATGGCGTCCAAGCCCCTTCACACTCGGC-----CCTCTCCCTGAATAACCCTGACCTCCTCTGTCCCCTCACTGCCACCCTGCAGACCTC----ATCTGCTGTCACCTCCTGCCTCAGGCCTCCGAGCTCCCGGCACAGGCAGGAGCCGCGGGAAAGGTACATCCCGGCCCCATCTCCCCCACAAGGCTGTGAGCTTAGCAACGGCAAGGTATATCCATGCACGCGGAAGAGGCCGGAACACGAAGCCCATGGTAATCACACCA-------CCT---GTGCCTGCCTAGGTATAGCGCGCGGGGGAACCGCAGATCCAGACCTGGTATTTGAGGAAGGCAGCCGGGCCTTCCCAGAGCAGGGACTCAGCTCGGCAGCAGGGCAGGTGCACGCAGCATAGTATTTCGGGAAGCCACCCCTGCGTGGTGAGCCCACGTTTCCCGAGAGCTGTGACAC s canFam1.chrUn 1868111 462 + 91062872 ACAGAATTAGCATATGCACATA---AACCCATAAACACTG-CCTCAAAATGGTCCCAGTGATTTTCTCCAGG----------------------------------------TGTCTGATTTTCCCAATTATTTGCAGGATTTCAATTCCCAAAGCATGGCACCTGAGGTCC-TCACAGCTGCCAAGTGCCCCTCCCTGGAAAGACCCGAC--CCCACAGCCACTC-CTGAGGCCCTTCTGGGCTATGTGACCTGACATCACTGCCTGGCTCCGTCACCGGAGTCC----------------------------TGCATTCCATCCCC--------------------------------GCAAGGCAGATCCTTGCATGTAGAACATGCTAGAAAACTAGGCCCCCAGTAGTCAGGGCAAAGGAGGCCCATGGTGTCTGTCAATGACAAGGTCACAAGGATGCCTCAGATCCTGACCTGGTA-TCGGGGAGGACAAC---------------------------------------CAGGTGCACACAGCACATCATTTCTGGAAGTTGGTCATGCTCTGCAAGCACAAGCCTCC-AAAAGCTGCAGCAC a score=25066.0 s hg17.chr7_random 484422 285 + 778964 GCTTCTCCTGGCGCCGAGCGTTCTGTATTCCATGGCCCATGAGTCAGAGAAACGGCAAAGCCTCCCTGGAGGCCGGGGAGGGCGGCGGTGATTCCCAGGAGAGCAACGGGGGCTGCCTACCTCCCCGAGGGCAAGGAGGGTGGTGGTGATTCCCGGGCAAGCAACGGGGCCTGCCCACCTCCCGGAGGGCAAGGAGGGCGGTGGTGATTCCCGGGCAAGCAACGGGGCCTGCCCACCTCCCGGAGGGCAAGGAGGGTGGTGGTGACTCCCGGGCAAGCAATGGGG s panTro1.chr6 483086 285 + 161576975 GCTTCTCCTGGCGCCGAGCGTTCCGTATTCCATGGCCCGTGAGTCAGAGAAACGGCAAAGCCTCCCTGGAGGCCGGGGAGGGCGGCGGTGATTCCCAGGAGGGCAACGGGGGCTGCCCACCTCCCGGAGGGCAAGGAGGGCGGTGGTGATTCCCGGGCAAGCAACGGGGCCTGCCCACCTCCCGGAGGCCGGGAAGGGCGGCGGTGATTCCCAGGAGAGCAACGGGGGCTGCCCACCTCCCGGAGGGCAAGGAGGGCGGTGGTGATTCCCGGGCAAGCAACGGGG a score=16403.0 s hg17.chr7_random 484707 208 + 778964 CCTGCCCACCTCCCGGAGGGCAAGGAGGGCGGTGGTGATTCCTGGGCAAGCAACGGGGCCTGCCCACCTCCCGGAGGCCGGAGAAGGCAGCTGTGATTCCCAGGCGAGCAACGGGGGCTGCCCACCTCCTGGAGGCCAGGGAGGGAGGCAGTGATGCCCAGGCAAGTGGCGGGACCTGCCCACCTCCCGGAGGCCGAGGAGGGCGGCG s panTro1.chr6 483661 208 + 161576975 CCTGCCCACCTCCCGGAGGCCGAGGAGGGCGGCGGTGATTCACAGGAGAGCAACGGGGGCTGCCCACCTCCCGGAGGGCAAGGAGGGCGGTGGTGATTCCCGGGCAAGCAACGGGGCCTGCCCACCTCCCGGAGGCCGGGTAGAGAGGCAGTGATGCCCAGGCAAGTGGCGGGACCTGCCCACCTCCCGGAGGCCGAGGAGGGTGGCG a score=4217.0 s hg17.chr7_random 484915 25 + 778964 GTGATGCCGGGGCAGGGG-ACGAGTC s panTro1.chr6 483869 25 + 161576975 GTGATGCCAGGGCGGGGG-ACGAGTC s canFam1.chrUn 1868600 26 + 91062872 GTGAGGCCTGGGCAGGGGTGTGGATC a score=1054.0 s hg17.chr7_random 484940 2 + 778964 TG s panTro1.chr6 483894 2 + 161576975 TG s mm5.chr5 136512842 2 + 149219885 TG s rn3.chr12 30588198 2 - 46649226 TG s canFam1.chrUn 1868647 2 + 91062872 TT a score=1930.0 s hg17.chr7_random 484942 2 + 778964 CC s panTro1.chr6 483896 2 + 161576975 CC s mm5.chr5 136512844 2 + 149219885 CC s rn3.chr12 30588200 2 - 46649226 CC s canFam1.chrUn 1868649 2 + 91062872 CC s galGal2.chr14 4311353 2 + 20603938 CA a score=196050.0 s hg17.chr7_random 484944 97 + 778964 TACCTCCTCTCGTTGTCATCCAGGTGAGCGAAGAGCACGTTCTTGGAGATGGCCTTGGCCAGCGCAGTCATGGTTTTGTAGTCCTTGGGAATCACCT s panTro1.chr6 483898 97 + 161576975 TACCTCCTCTCGTTGTCATCCAGGTGAGCGAAGAGCACGTTCTTGGAGATGGCCTTGGCCAGCGCAGTCATGGTTTTGTAGTCCTTGGGAATCACCT s mm5.chr5 136512846 97 + 149219885 TACCTTCTCTCGTTGTCGTCCAGGTGAGAAAAGAGCACGTTCTTAGAAATGGCCTTGGCCAGCGCGGTCATGGTCTTATAGTCCTTGGGAATGACCT s rn3.chr12 30588202 97 - 46649226 TACCTTCTCTCGTTGTCATCCAGGTGAGAAAAGAGCACGTTCTTAGAAATGGCCTTGGCCAGCGCAGTCATGGTCTTATAGTCCTTGGGAATGACCT s canFam1.chrUn 1868651 97 + 91062872 TACCTTCTCTCGTTGTCATCCAGGTGAGCAAACAGCACGTTCTTGGAGATGGCTTTGGCAAGCGCCGTCATGGTCTTGTAGTCCTTGGGGATGACCT s galGal2.chr14 4311355 97 + 20603938 TACCTTCGTTCATTGTCATCGAGATGAGCAAAGAGCACGTTCTTGGAGATGGCCTTTGCCAGAGCGGTCATAGTTTTATAGTCCTTCGGAATAACCT s fr1.chrUn 56293921 97 + 349519338 TACCTTCTCTCGTTGTCGTCAAGGTGAGCAAACAACACATTCTTGGAGATGGCCCTCGCCAGGGCAGTCATGGTCTTGTAGTCCTTAGGGATCACCT s danRer1.chr5 33148218 97 - 40038624 TACCTTCTTTCATTGTCGTCAAGATGAGCAAAAAGAACATTCTTTTCAATTGCTTTAGCAAGGGCAGCCATAGTTTTGTAGTCTTTAGGAATGACCT a score=3886.0 s hg17.chr7_random 485041 9 + 778964 GAAGCGGAG s panTro1.chr6 483995 9 + 161576975 GAAGCGGAG s mm5.chr5 136512943 9 + 149219885 GTGGGAGAG s rn3.chr12 30588299 9 - 46649226 GTGGAAGAG s canFam1.chrUn 1868748 9 + 91062872 GCAGGGGAA s danRer1.chr5 33148315 9 - 40038624 GGAAAAAAA a score=100.0 s hg17.chr7_random 485041 1 + 778964 G s fr1.chrUn 56294018 1 + 349519338 G a score=-73.0 s hg17.chr7_random 485050 8 + 778964 ---CCAACACA s panTro1.chr6 484004 8 + 161576975 ---CCAACACA s rn3.chr12 30588308 8 - 46649226 ---ACAAGGCT s canFam1.chrUn 1868762 8 + 91062872 ---CCAAAGTC s danRer1.chr5 33148324 8 - 40038624 ACACCAAA--- a score=-1638.0 s hg17.chr7_random 485058 14 + 778964 TCACC------------------------------GTGTGAGCC s panTro1.chr6 484012 14 + 161576975 TCACC------------------------------GTGTGAGCC s rn3.chr12 30588316 14 - 46649226 CAGAC------------------------------CTTTGAGCC s canFam1.chrUn 1868770 44 + 91062872 AGACTTGCAAGAGTCCCCAAAGGTCCAAACTTGGGGTTTGGCCC a score=14199.0 s hg17.chr7_random 485072 133 + 778964 ACCCTGG--CCTGATG------------CTGTGACGCGGCCTGAAATCTCCCTACTCCACCCTCAGCCTGCTGTTATCAGGCAATGGTACAAATATGCAATTTGAAGTTTAATGTGTATTTCACCACTGTTTTTTT-CTAAACAGAGT s panTro1.chr6 484026 134 + 161576975 ACCCTGG--CCTGATG------------CTGTGACGTGGCCTGAAATCTCCCTACTCCACCCTCAGCCTGCTGTTATCAGGCAATGGTACAAATATGCAATTTGAAGTTTAATGTGTATTTCACCACTTTTTTTTTTCTAAACAGAGT s canFam1.chrUn 1868814 128 + 91062872 CTCCTAGCACCTGCTGGACCCCAGGAAACTGTGACATGGCCGGAAATGTGCC----CTACCTTCAAC---ATGTTTCCAGGTGACCACAAGGACAGACAACATGAAATCTCA---------CATCACAATCATTTC----AACAAAAT a score=81288.0 s hg17.chr7_random 485205 902 + 778964 CTTgatcacagctcactgcagcctcaacctcctgggctcaggtgctcctcccacttcagcctcccaagtagctgggaccacaggtatgcaccaccacacttggctaacttttttatttttagtggagatgaggtctcactatgttgcccaggctggtctcaaacatctcagctcaagcaatcctcccatctcagcctc-ccaaagtgctgggattacaggtgtgagccaccgcacccagcctcttgttacttttgaaatgcagtcacgtgtcacgtaatgatggggaagcgttctgagaaattcatcatgaggcaatttcatcatcatgcgaacatcacagagcaacagacacaagcctagctggtatagcctaactatgcactgaggttataacatgatagagcctatcgctctaggctacaaatctgtacaggatgtggccatcctcaacactgcaggcagctgtaagacaatgctaggtgtatctaaacatatctacacaggccgggcacggtggctcacgcctgtaatcccagcactttgagaggccgaggcaggcggatc-gcctgaggtcaagagttc--gagaccagcctgcccaacat-ggtgaaaccccatctctactaaaaatacaaaaattagctgggaaaggtggtggg-cacctgtaatcagccactcaggaggctgaggcaggagaatcacctgaacccgggaggtggaggttgccatgaggcaagatcatgccactgcacttcagcctgagtgacagagggagaatttgtctcaaaaaaataaacaaa-taaacatatctacacagagaaaaggtacagtaaaaaatatggtatcataatcttacggaaccacatatatgcaatctgtcaacaaccaaaacgtgg-tcatgtagt s panTro1.chr6 484160 910 + 161576975 CTTgatcacagctcactgcagcctcaacctcctgggctcaggtgctcctcccgcttcagcctcccaagtagctgggaccacaggtatgcaccaccacacttgggtaacttttttatttttagtggagatgaggtctcactatgttgcccaggctggtctcaaacatctcagcttaagcaatcctcccatctcagcctcaccaaagtgctgggattacaggtgtgagccaccgcacccagcctcttgttacttttgaaatgcagtcacgtgtcacgtaatgatggggaagcgttctgagaaattcatcatgaggcaatttcatcatcatgcgaacatcacggagcaacagacacaagcctagctggtacagcctaactatgcactgaggttataacatgatagagcctatcgctctaggctacaaatctgtacaggatgtggccatcctcaacactgcaggcagctgtaacacaatgctaggtgtatctaaacatatctacacaggccgggcacagtggctcacgcctgtaatcccagcactttgagaggccgaggcaggcggatccgcctgacgtcaagagttccggagaccagcctgcccaacataggtgaaaccccgtctctactaaaaatacaaaaattagctgggaaaggtggtggggcacctgtaatcagccactcaggaggctgaggcaggagaatcacctgaacccgggaggtggaggttgccatgaggcaagatcatgccactgcacttcagcctgagtgacagagggagaatttgtctcaaaaaaataaacaaaataaacatatctacacagagaaaaggtacagtaaaaaatatggtatcataatcttacgggaccacatatatgcaatctatcaacaaccaaaacgtgggtcatgtagt a score=7633.0 s hg17.chr7_random 486107 71 + 778964 gtgtgcctgtatgcagtacactgttactggctg----------------------cagtcaccccaccgtgcaaagatctca-aaacccattcc s panTro1.chr6 485070 71 + 161576975 gtgtgcctgtatgcagtacactgttactggctg----------------------cagtcgccccaccttgcaaagatctca-aaacccattcc s canFam1.chrUn 1869239 94 + 91062872 GTGAGCATGAGCTCCAGACCCTGCCACTGACTGGGTATCAACACGGTGTTGGCCCCAGCAGACCTGCCAGGGGGAGCTTTCAGAAGCCCGTGCC a score=7800.0 s hg17.chr7_random 486178 83 + 778964 tcccgtctgtctgtctgtctgtctgaaactctgcaccctttgatcaacaattccccactccctcTCTGGATGAATGAGAAGCA s panTro1.chr6 485141 83 + 161576975 tcccgtctgtctgtctgtctgtctgaaactctgcaccctttgatcaacaattccccactccctcTCTGGATGAATGAGAAGCG a score=32088.0 s hg17.chr7_random 486261 255 + 778964 CTACGAACATTTCAGATGCCAGGATATCCCCCGCTTAAAATGAAACCACGCAGGAAGGTCATTCGGGCCACAGTGAGACCTCCTGTT----GTGCCTGG--GCCACCCAGGAAGTCCCTGTCTGTCCAGGTGCAACTGCGGACCACGCAGGCTTAGGTGTGC-TGCGTGTAACGCAGAGAGCCCCTGTGCAGACGTCTTTGAGAGACAGCAATGAAATCTCCTAAAAAGCCACTCCAGTTCTAACAGACTT---TTAAAAATGTA s panTro1.chr6 485224 255 + 161576975 CTACGAACACTTCAGATGCCAGGATATCCCCCGCTTAAAATGAAACCATGCAGGAAGGTCATTCGGGCCACAGTGAGACCTCCTGTT----GTGCCTGG--GCCACCCGGGAAGTCCCTGTCTGTCCAGGTGCAACTGCGGACCACGCAGGCTTAGGCGTGC-TGCGTGTAACGCAGAGAGCCCCTGTGCAGACGTCTTTGAGAGACAGCAATGAAATCTCCTAAAAAGCCACTCCAGTTCTAACAGACTT---TTAAAAATGTA s canFam1.chrUn 1869377 249 + 91062872 TTACGAGTATCTCAAACACCAAGATTTCTC---CTTGAAATAAAAGTG-GTAGGAGGGCTATTTGGGCCATAAGGTGGTCCCCTCATCCCAGTGCTCAGCTGCCA-----GAAATGTCTGCCAGACTGGG-GTGGCATCAGGCC---CCAGCCTGTGTGTGTGTTAGTTTAGTACC-ATGGCTTGTACCCAGGGATCTTTGGGGGACAAGGCTGAGG--TCATAAAGGGCCACTCCACTTCTAAGAGGCTTttgttaaaaatttg a score=28581.0 s hg17.chr7_random 486516 308 + 778964 AGTGTTGGATgggcgtggtggctcacacctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggtcagaagttcaagacccgcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaaattagccaggcatgatgacaggcacctgtaatcccagccagtcaggaggctgagacaggagaatcacaggaacctgggaggcagaggttgtggtgagctgagatcatgccattgcactccagcctggacaacaagagtgaaactccatctcaaaaaaaTATATataaa s panTro1.chr6 485479 308 + 161576975 AGTGTTggctgggcgtggtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcagaagttcaagacccgcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaaattagccaagcatgatgacaggcacctgtaatcccagccagtcaggaggctgagacaggagaatcacaggaacctgggaggcagaggttgtggtgagctgagatcatgccattgcactccagcctggacaacgagagtgaaactccgtctcaaaaaaaTACATataaa a score=15955.0 s hg17.chr7_random 486824 150 + 778964 tgttttgttttcaaatactttctatttacagagaaattg-caaagatcattctcg-----tgcaccttgcag-ttccctgatgttactaccttacatcctatgatgcatttatcacaactggggaagccatgtcgatacatgacagacactgagctc s panTro1.chr6 485787 151 + 161576975 tgttttgttttcaaatactttctatttacagagaaattg-caaagatcattctcg-----tgcaccttgcaggttccctgatgttactaccttacatcctatgatgcatttatcacaactggggaggccatgtcgatacatgacagacactgagctc s canFam1.chrUn 1869626 123 + 91062872 ccttttattttagaatagtttagattcacagaaaagttgccaaaggaggtgcccatagcctgcccccaaca--tcccccatggctaacacatgac----------------atcacagccatggaag----------------cagccatggcgctc a score=0.0 s hg17.chr7_random 486974 24 + 778964 cacacctaatctgttcttcctttg a score=1046.0 s hg17.chr7_random 486974 11 + 778964 cacacctaatc s panTro1.chr6 485938 11 + 161576975 cacacctaatc a score=2340.0 s hg17.chr7_random 486985 13 + 778964 tgttcttcctttg s panTro1.chr6 485949 13 + 161576975 tgttcttcctttg s mm5.chr5 136513723 13 + 149219885 TGTGATCCCTTTA a score=29124.0 s hg17.chr7_random 486998 317 + 778964 tttggcctgaatggcctttttctgtcccaggacccc------gtcctgt-------------ctcccccgtgg----cctccggtctgcaacagttctt-------caca-----ctct----------------cctc-------gtgtgccgtgagcagg----------gctggtcaggcattctgcggagcatcccgcaatttaggtttatttgaggttcttctcgtggttagactgaagttctgggtcttggg-----------------gaggaagaccccagaggtggagtgccCTAATAAATT-------------------------------------------------------------------------------TTTA--ACAATGCTTGCGCTAGCTTTAATTAGCTGATTATAAAAGtattaagtactgcggaaaggaatggggtgtgcgtgttta--gggaata--ga s panTro1.chr6 485962 317 + 161576975 tttggcctgaatggcctttttctgtcccaggacccc------gtcctgt-------------ctcccccgtgg----cctccggtctgcgacagttctt-------caca-----ctct----------------cctc-------ctgtgccgtgagcagg----------gctggtcaggcattctgcggagcgtcccacaatttaggtttatttgaggttcttctcgtggttagactgaagttctgggtcttggg-----------------gaggaagaccccagaggtggagtgccctAATAAATT-------------------------------------------------------------------------------TTTA--ACAATGCTTGCGCTAGCTTTAATTAGCTGATTATAAAAGTATTAAGTActggggaaaggaatggggtgtgcgtgttta--gggaata--ga s mm5.chr5 136513736 424 + 149219885 GCTTTCCTGTATGATC---TCCTGTCCCAGGACATT------ATCAGGTGACATTCAGTGTCCTACCACTTGGGTCTCCTCTGACCTATCAC-GTGTCT-------CACAGCTGTCTTC----------------CCTCGACA---CTGTGCTTCACAC-------------GCACGTTCGCCATGCAGC-------CCCTCACTTGGGGACTGTCTGAAGCGCCGCACAAAGGTAAACCAGAGCTCTAGTGATGGAGAGAGAAGGGAAGGACTAGGGAAGGACCACAGAAGGGAAGGACTCTGAGGAGTTAGTTTTGATCTTGCTATGTAGCCCAGGCTGGCCTGGATCATGGGCCTGCGTCACCATACCCAGCAGCTTCCTAAGTGACTTTACCATAATGCCAATCTTAGTTTTGAACGTCTCCTCGC-ATGGTATCAAGTCCAGAAGAAGGCAGTG----GTGGGGATTTA--GAAGCTGCCGT s canFam1.chrUn 1869749 347 + 91062872 tgtgggcagcatgtcttggttctgtcccgggagctcacactggccctgg-------------atcccacacgg----gtcacattcagtgatggtgcctggagccctaca-----ctctggacagtctcccaggaccccaacagtttgatggcctgggcaggtctgaggggtgctggtcagttactctgcagaatgcccataaatttgggttt-tctg-ggatctccttgaggttatg-tggggttctgggt-----------------------gaggaagataacagaagtgaggtgccCTGGTGGGTT-------------------------------------------------------------------------------TTAA--ACGGTG---------GTTTATATCCTCTGATTATGAAAGTATTGAGTgctaggggcggggagcaggtgtcagtgtgtaatggggtca--ga a score=34601.0 s hg17.chr7_random 487315 187 + 778964 gtctcagttctgcaaggtaagaaggtt-ctggagatggtggt--------ggtgatgattccacaacaatgagaatgtgcttaacgccactcaactgtgcactcagaaatggctaacagggtactggggactgacttgtgtctccccagaaattcacatatggaagccctaaccagccatgctatgg---tatttggag s panTro1.chr6 486279 187 + 161576975 gtctcagttctgcaaggtaagaaggtt-ctggagatggtggt--------ggtgacgattccacaacaatgataatgtgcttaacaccacttaaccatgcactcagaaatggctaagagggtactggggactgacttgtgtctccccagaaattcacatatggaagccctaaccggtcatgctatgg---tatttggag s mm5.chr5 136514160 187 + 149219885 GTTTCTGTTTTTCAAGATGAGAAACAT--TGCATAGGCTGATACCATATGGGTGGTGGCTGCACAACTCTGA----ATGGCCAACGCCACCTAGCTGCACGCATAAAAATGACTAAGACGGTGCATCAGGCTGAGCTGTGCCTCCC---AGGTTCCTGTGTGGGATCCCCGA---AGCATCCTGTGGATAGATGTGTAG s rn3.chr12 30589446 158 - 46649226 GCTTCTGTTTTTCAAGATGAGAAACAT--TCCATGCGCTGAT-----GGGGGTGGTGGCTGCATGACTGTGC----ACGACCAATGCCACCTAGCGTTGCACTTAAAAAT---------GGTGCATCAGGCTGAGCTGTGCCTTCC---AGGTTCCTGTGTGGGGA---------AGCATC---------TTTGTGGGG s canFam1.chrUn 1870096 173 + 91062872 gtctca----tgtggggcctggaacatcctggagatg--gac--------ggggaatggtgcacagcagcgcaagtatcctcaatgcccctgaactgtgcacagaaacatggtcgaagtgatGCAC--GGACAGGCTGTCCCT------AGACCCATGTGTTGAAGCCCTGCCCCACAGTG-TGTGG---TGTCTGGAG a score=2336.0 s hg17.chr7_random 487502 42 + 778964 aga----------ggcctttgggaggtggctggggttggatggggtcatgag s panTro1.chr6 486466 42 + 161576975 aga----------ggcctttgggaggtggctggggttggatggggtcatgag s mm5.chr5 136514347 39 + 149219885 ACC----------AGGCATGTGCAAGTGGCTGGGTT---ACTGAGGTGGAAG s rn3.chr12 30589604 42 - 46649226 AGACTTGCAGACCAGGTGTGTGTGAGTGGTTGGATT---ATTGAG------- a score=5226.0 s hg17.chr7_random 487544 49 + 778964 agaagggccctgaataatgggatttgtgcctgtataagaagagaccaga s panTro1.chr6 486508 49 + 161576975 agaagggccctgaataatgggattcgtgcctgtataagaagagaccaga s mm5.chr5 136514386 46 + 149219885 GGCAGAGTACAGGTTTCGTAGCTTAGTGCCCTT---AATAGAGACTAGA a score=29238.0 s hg17.chr7_random 487593 318 + 778964 gaTgctgggcatggtggctcacgcccgtaaccccagcactttgggaggccaagacgggcatatcacaaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctttactaaaaatacaaaaaattagctgggtgtggtggtaggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacctgggaggcggagcttgcagtgagctgagatcgcaccactgcactccagcctgggggacggagcaagactctgtttcaaaaaaaaaaaaaaaaaaaaagagagagaCCAGAG s panTro1.chr6 486557 316 + 161576975 gatgctgggcacggtggctcacgcccgtaaccccagcactttgggaggccaagaccggcagatcacaaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctttactaaaaatacaaaaaattagctgggtgtggtggtaggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacctgggaggcggagcttgcagtgagctgagatcgcaccactgcactccagcctgggggacggagcaagactctgtttcaaaaaaaaaaaaaaaaaaa--gagagagaccagag a score=1173.0 s hg17.chr7_random 487911 4 + 778964 AGGC s panTro1.chr6 486873 4 + 161576975 aggc s mm5.chr5 136514432 4 + 149219885 AGGC a score=15747.0 s hg17.chr7_random 487915 121 + 778964 TGCAGGAGCATGGGAGGCACACAGCCCAGGA----CAGAGCCTCTGCTCACTCCAAGGACCTGGATGCCAGCGAGTCCCTTCCCTTCC-TGAGCCTGTGAGGAACCTAAGGCCGCCATGGGGCTGC s panTro1.chr6 486877 122 + 161576975 tgcaggagcatgggaggcacacagCCCAGGA----CAGAGCCTCTGCTGACTCCAAGGACCTGGATGCCAGCGAGTCCCTTCCCTTCCCTGAGCCTGTGAGGAACCTAAGGCCGCCATGCAGCTGC s mm5.chr5 136514436 95 + 149219885 GT--GAAGCAGGACAGACTCAC----------------AGCCTGTGCTGCCCTGAAGAACCCT-----------ATCCCTCTACTCCC-CAAGCCTGTTCAAGTCCCAGAACTA-CAGGTAGCTGC s rn3.chr12 30589680 113 - 46649226 TAAAAGAGACTAGAAGGCGTGAAGCAGGAAAGAACCACAGCCTATGTGGTCCTGAAGAACTCC-----------ATCCCTCTTCTCCC-CACGCCTGTTCAAGTCCCAGAACTA-CAGGGAGCTGC a score=-7342.0 s hg17.chr7_random 488036 228 + 778964 AGTGACCCCAC-----ACAGAGCTGCTCCCATAAATTTGAGCTCAGCTCATC-------TGGCAAAGACAGTAGCAA-ACCAAGCCCACCCAG------AACTGCCTCTGCCATC-------AC-CCACATA--------GTCCTCCCTCC--------------AACCAGGATGACAC---TGAGACCCCCAGGA---------GGATGAGGGTGCC------CCGTGGGCTTCCAGGGAGCTCACAGGTGACAGCCACGTGCCGAGGCCTGGGGACAGGAACCCCG----TGACCCG s panTro1.chr6 486999 228 + 161576975 AGTGACCCCAC-----ACAGAGCTGCTCCCATAAATTTGAGCTCAGCTCATC-------TGGCAAAGACAGTAGCAA-ACCAAGCCCACCCAG------AACTGCCTCTGCCATC-------AC-CCACATA--------GTCCTCCCTCC--------------AACCAGGATGACAC---TGAGACCCCCGGGA---------GGATAAGGGTGCC------CCGTGGGGTTCCAGGGAGCTCACAGGTGACAGCCACGTGCCGAGGCCTGGGGACAGGAACCCCG----TGACCCG s mm5.chr5 136514531 175 + 149219885 ATTTGAGCCACATTAGACAGTGTTTGTCTCAATAGTG-----CCAGATTCTA-------TGGTAACAATAAT------------CCCACCCAT------AGCTAAGTCTCGTATTCTGTGTGAC-TCCCATG---------------CTCT--------------GGCCAGGTAGGGAA---TCGAATCCCCAGGAC--------TGACAGGGACATC---------TGGG-------------TGTGGGTGA---ACACATGCTGGGGCT---------------------------- s rn3.chr12 30589793 176 - 46649226 GTTTGAGACAC-----ACA-----------------TTAAACACTGCTTGTC-TCACGGTGCCGGATACTATGGTGACAGTGATCCCACCCAT------GACCAAGTCTCCTATTCCACGTGAC-CCCCACG---------------CTCT--------------GGCCACATAGCGAA---TTGAATCCCCAGGAC--------TGACAGGGACATC---------CGGG-------------GGTGTGTGA---ACACGTGCTGGGATT---------------------------- s canFam1.chrUn 1870707 262 + 91062872 AGGGACTTCCC-----ACTGGGCGGCTC---------TGAGGCCAGGCTCTAGTCTCCAGGGCCAGAAGGCCAGGAGGATAGGGACCACACGGTCTGGACGCTGGTTCCTCCACCC------ACACCCCATGAGCTGGGTGTCCTGTCTCTTCCCTGATTCTGTGGGTCAGGAAACCACACACAAGAGCCCATGGGCAGTGACCATGACAATGGTGTTGCCACCACCCAGCCCCTTTTGGACCAGAAGGGAGA---GCA---GCCAGGAGC-------AGGGACCCTGGAGATGA---- a score=575.0 s hg17.chr7_random 488264 3 + 778964 TGA s panTro1.chr6 487227 3 + 161576975 TAA s fr1.chrUn 56295537 3 + 349519338 TAA a score=-562.0 s hg17.chr7_random 488267 3 + 778964 GCC s panTro1.chr6 487230 3 + 161576975 GCC s mm5.chr5 136514706 2 + 149219885 -CT s rn3.chr12 30589969 2 - 46649226 -CT s canFam1.chrUn 1870969 2 + 91062872 -GC s galGal2.chr14 4314167 3 + 20603938 GCA s fr1.chrUn 56295540 3 + 349519338 AGC a score=1337.0 s hg17.chr7_random 488270 2 + 778964 TC s panTro1.chr6 487233 2 + 161576975 TC s mm5.chr5 136514708 2 + 149219885 TT s rn3.chr12 30589971 2 - 46649226 TT s canFam1.chrUn 1870971 2 + 91062872 CC s galGal2.chr14 4314170 2 + 20603938 TT s fr1.chrUn 56295543 2 + 349519338 TG s danRer1.chr5 33148894 2 - 40038624 TT a score=294164.0 s hg17.chr7_random 488272 189 + 778964 ACCTTCCTGACGTAGGACACGGCGTCCTCCTCGGTGTACACCTCGGCACTCACGCCTCCTCGCCGGCGGCGGGCCTTCACCACAGGGTTCGGGGGGGTGGGCGACACCTCCTCATCATGGGAGTCCGACTGTGAGTTTGACTTTTGCCGCGCCAAAATCTGCCTGTTTTCTTCCTGTGTGGGA-GAGGAA s panTro1.chr6 487235 189 + 161576975 ACCTTCCTGACGTAGGACACGGCGTCCTCCTCGGTGTACACCTCGGCACTCACGCCTCCTCGCCGGCGGCGGGCCTTCACCACAGGGTTCGGGGGGGTGGGCGACACCTCCTCATCATGGGAGTCCGACTGTGAGTTTGACTTCTGCCGCGCCAAAATCTGCCTGTTTTCTTCCTGTGTGGGA-GAGGAA s mm5.chr5 136514710 187 + 149219885 ACCTTCCTCACGTAGGAGACAGCATCTTCTTCAGTGTAGACTTCAGCACTCACACCGCCCCGCCGGCGACGCGCCTTGACCACGGGGTTTGGAGGTGTTGGGGAGATCTCCTCATCGTGGGAATCACACTGGGAGTTTGACTTCTGCCGAGCCAGGATCTGCCTGTTTTCCTCC--TGTGAGA-GAAGAA s rn3.chr12 30589973 187 - 46649226 ACCTTCCTCACGTAGGAGACGGCATCTTCCTCAGTGTAGACTTCAGCACTCACGCCACCCCGTCGACGACGTGCCTTTACCACAGGATTTGGAGGTGTTGGGGAGATCTCCTCATCGTGGGAATCACACTGTGAGTTTGACTTCTGCCGAGCCAGGATCTGCCTGTTTTCCTCC--TGGGAGA-GAAGAA s canFam1.chrUn 1870973 176 + 91062872 ACCTTCCTCACATAGGATACAGCATCCTCCTCCGTGTACACCTCGGCACTCACGCCCCCTCGGCGACGGCGAGCTTTCACCACGGGGTTTGGCGGGGTTGGGGAGACCTCCTCATCG------------TGTGAGTCTGACTTCTGCTGCGACTGAATCTGTCTGTTTTCTTCC--TGTGGGGCGAAGAC s galGal2.chr14 4314172 187 + 20603938 ACCTTTCTAACATAAGAAACAGCATCTTCTTCTGTGTACACCTCTGCACTGACCCCTCCTCTCCTGCGTCGGGCTTTTACTACTGGGTTGGGAGGAGGAGGAGAAATCTCATCGTCATGGGAATCAGACTGGGAACTGGACTTCTGCCGAGCCAGTATCTGTTTGCATTCTTCC--TGCAAGG-CAAAAA s fr1.chrUn 56295545 186 + 349519338 ACCTTGCGCACATAGCTGACAGCATCCTCTTCTGTGTAGACCTCAGCGCTGACCCCCCCCCTGCGGCGCCGGGCCTTGACGACGGGGTTGGGAGGAGGGGGGGACACCTCGTCATCATGTGAGTCTGACTGGCTGTTAGATTTCTGCCGTGCCATTATCTGCTTGCATTCTTCC--TGCAAAA--AGGAG s danRer1.chr3 29535578 188 - 31142523 ACCTTTCTGACGTAGCTGACGGCATCCTCCTCCGTGTAGACCTCAGCGCTGACACCACCTCTCCGGCGCCGGGCCTTCACCACAGGGTTTGGAGGAGGAGGAGACACTTCATCATCATGAGAGTCCGACTGCGAGTTGGACTTCTGTCGGGCCATGATCTGCTTGCATTCTTCC--TGTGGAGAGAGGAA a score=473.0 s hg17.chr7_random 488461 9 + 778964 AACACAGAA s panTro1.chr6 487424 9 + 161576975 AACACAGAA s mm5.chr5 136514897 2 + 149219885 -------AA s rn3.chr12 30590160 2 - 46649226 -------AG s canFam1.chrUn 1871149 2 + 91062872 -------AG s galGal2.chr14 4314359 9 + 20603938 GAGACAAAT s fr1.chrUn 56295731 9 + 349519338 CACAAAGAA a score=-2006.0 s hg17.chr7_random 488470 1 + 778964 A-- s panTro1.chr6 487433 1 + 161576975 A-- s mm5.chr5 136514899 1 + 149219885 G-- s rn3.chr12 30590162 1 - 46649226 G-- s canFam1.chrUn 1871151 1 + 91062872 A-- s galGal2.chr14 4314368 3 + 20603938 GAA a score=8470.0 s hg17.chr7_random 488471 21 + 778964 GGAAG---TAAGAA------CCTGGCTGTC s panTro1.chr6 487434 21 + 161576975 GGAAG---TAAGAA------CCTGGCTGTC s mm5.chr5 136514900 21 + 149219885 GAAAA---TGAGAA------ATTGGCTGTC s rn3.chr12 30590163 21 - 46649226 GAAGG---TAAGAA------ATTGGCTGTC s canFam1.chrUn 1871152 30 + 91062872 GGGAGGGCTGAGAACAGCACCCTGCCCGAC a score=807.0 s hg17.chr7_random 488492 2 + 778964 CC s panTro1.chr6 487455 2 + 161576975 CC s mm5.chr5 136514921 2 + 149219885 TC s canFam1.chrUn 1871182 2 + 91062872 CC a score=3185.0 s hg17.chr7_random 488494 17 + 778964 ggccaggcacagggccc s panTro1.chr6 487457 17 + 161576975 Ggccaggcacagggccc s canFam1.chrUn 1871194 17 + 91062872 GGCCTGGCGGAGACCCC a score=204580.0 s hg17.chr7_random 488511 2273 + 778964 atgcctgtgatcccagcactgtgggaggactagtgggaggatcgcttgaactcaggagttggaCATACGGTTAGGCTTTGTGTCCCCACCCAAATCTCTTTTTCTGTCCCCACCCAAATTTCACTTTGTGTCCCCACTCAAATCTCATTTtgtgtcccccaccaaatctcatcttgaattgtaatccccatcatccccatcatccccacttgtccagggagagaccaggtggaggcgactgaatcatgggg-cagtttcccccttgctgttctcgtgatagtgagggagttttcacaagatctgatgggtttccaagggactcctcccccttcactcagcacttctccttcctgctgccttgtgaagaagcggctctgcttcccccctgctgccttctgctatgatcataagtttcctgaggccccccgagccatgcagaactgtgagtcaattcaacctctctgtaaactacgcagtcttgggtggttctttatagcagtatgaaaatggactaatacaCCCTGTCTCTATAAAAAAAAAAAAAAAAa---gaattagctgtaagtgggttcacctaaagttgcagttcctaagaacctgtcaacATTTCTGTGTATGTACCAGTTTTGTGAGACATTAAAAAATAAAGTGGGTGAGGctctccaggtaatttttataactgcctgcacatccacaattatctcaaaattaaaactttaatttGCTTTTTAAAGTGAGTGAGAGGCTGAACTGGTGTGGGGTTTATGGAGGCTGAGATGACAAGCATCTGGAGGTCTGCTGGGAGGAGGGGACTGGAAGTTGAGCCCCGAGTCACCGTGGAACG-AC-CATGGT-TGTGTCCTCCA--CGTGGG-CTGGGGTTGCTCCGAAGCCCACCCTGCCTTGAGCTGTGGATGGCAGGATGCACCACCACTGCAGACCTTGCTCCTGCCCACAGACAAGTGCTTCGACCACTGTCCCCAGCTCTTCAGCCACTCTAAACCTCATGCATCCGGCATGGTCTTAGCCAGCCTGGGCATTTCAATCCCAC-CAGGGCCAATGTGCCTTTCCTCCTGCACCTGGAGGACCTGAGTTTGCATAACCTGCAGCCTAAACACTGACCTCCACCACGCTCAAAGGTGGGCTTAGGACCAGAGGCAGGGGGCTCTGTGGTCTGAGGACACACCGGGCCCTGAGCTGAGCCCCTTTCTCACTGCAATTCTGCCTCTTTGGGAAAAGGGTGAATGAAGTAAGgggagggagggaggaaggaagaagggaggagggagcagggaggagggagAGGAGAAGTCAGGAATCAGCAGGGCCAGGCAGCCTGGAGAGCCCAGGAGCTCAGTCCTCGTCCTAAGGCCACACCGGGTAGCTCACAGGGACCACAGATGAGCACACTCCTTTCCTAGAGTgctgtgtgaccctgagtaag-ttgcttgacctcaccgggactcatctgtgaggggaaatgaagacacatgtccctggcatcgtagtaagaaGAGACTTCAGGCCAAGTGCGGTGGCTTCAGGCTGGGTGTGGTGGCTTCTggccgggtgtggtggctcacgcctataatcccagcacttagggaggatcatttggccccaggagttcaagaccagcctgggcaacatagtgagaccataactcaaaaaaaaTTTGTTggccaggcacggtggttcacgcctgtaaccccagcactttgggaggccgagatgggtggatcacgaggtcaggagatcgagaccatcttggctaacacggtgaaaccctgtctctactaaaaatacaaaaaattagctgggtgtggtggcaggcacctgtagtcccagctactccggaggctgaggcaggagaatggcgtgaacccgggagtgagcttgcagtgagccgagatcgtgccactgcactccagcctggatgacagagcgagactctgtctcaaaaaaaaaaaaaaa-TTGTTTTAAGGAAAAGAGATTTCAACCTGTCCTAACAGATATGAATGGCTCTGTGTGCAGAAGCAATGCTGGCTCACATGACC-TGAGTGTTCACCTTGGTCACTCATGCCCTATTCAGCCTCGAGGTGGGTGCGGCCCCCAACCCCTCACACAGATCAGGCACACAAGGCCCTCGCTCTCCCTCCCGGCCTCACCCTGATCCATCCCCTGGCTTTCCTGCCGGTCCTCTGAGGGCTTTGGTCCCCCACAGCTCGGGAGCTTCCCGAAAAAAGATGGCGGCCCTATCAGGCAGGGCCTTGCGTCATGGA s panTro1.chr6 487474 2258 + 161576975 atgcctgtgatcccagcactgtgggaggactagtgggaggatcgcttgaactcaggagttggaCatacggttaggctttgtgtccccacccaaatctcTTTTTCTGTCTCCACCCAAATTTCACTTTGTGTCCCCACCCAAATCTCATTTtgtgtcccccaccaaatctcatcttgaattgtaatccccatcatcccca---------cttgtccagggagagaccaggtggaggcgactgaatcatgggggcggtttcccccttgctgttctcgtgatagtgagggagttttcacaagatctgatgggtttccaagggactcctcccccttcactcagcacttctccttcctgctgccttgtgaagaagcggctctgcttcccccctgctgccttctgccatgatcataagtttcctgaggccccccgagccatgcagaactgtgagtcaattcaacctctctataaactacccagtcttgggtggttctttatagcagtatgaaaatggactaatacaCCCTGTCTCTATaaaaaaaaaaaaaaaaaaaagaaTTAGCTGTAAGTGGGTTCACCTAAAGTTGCAGTTCCTAAGAATCTGTCAACATTTCTGTGTATGTACCAGTTTTGTGAGACATTAAAAAATAAAGTGGGTGAGGCTCTCCAGGCAAtttttataactgcctgtacatccacaattatctcaaaattaaaactttaatttGCTTTTTAAAGTGAGTGAGAGGCTGAACTGGCGTGGGGTTTATGGAGGCTGAGATGACAAGCATCTGGAGGTCTGCTGGGAGGAGGGGACTGGAAGTTGAGCCCCGAGTCACCGTGGAACGGACGCATGGTATGTGTCCTCCCACCGTGGGGCTGGGGTTGCTCCGAAGCCGACCCTGCCTTGAGCTGTGGATGGCAGGATGCACCACCACTGCAGACCTTGCTCCTGCCCACAGACAAGTGCTTCGACCACTGTCCCCAGCTCTTCAGCCACTCTAAACCTCATGCATCCGGCATGGTCTTAGCCAGCCTGGGCATTTCAATCCCACACAGGGCCAATGTGCCTTTCCTCCTGCACCTGGAGGACCTGTGTTTGCATAACCTGCAGCCTAAACACTGACCTCCACCACCCTCAAAGGTGGGCTTAGGACCAGAGGCAGGGGGCTCTGTGGTCTGAGGACACACCGGGCCCTGAGCTGAGCCCCTTTCTCACTGCAATTCTGCCTCTTTGGGAAAAGGGTGAATGAAGTAAGgggagggagggaggaaggaagaagggaggagggagcagggaggagggagAGGAGAAGTCAGGAATCAGCAGGGCCAGGCAGCCTGGAGAGCCCAGGAGCTCAGTCCTCGTCCTAAGGCCACACTGGGTAGCTTACAGGGACCACAGATGAGCACACTCCTTTCCTAGAGTgctgtgtgaccctgagtaagcttgcttgacctcaccgggactcaTCTGTGAGGGGAAATGAAGACACATGTCCCTGGCATCGTAGTAAGAAGAGACTTCAGGCCAAGTG--------------------TGGTGGCTTCTggccgggtgtggtggctcacgcctataatcccagcacttagggaggatcgtttggccccaggagttcaagaccagcctgggcaacatagtgagaccatatctcaaaaaaaaTTTGTTggccaggcacggtggttcacgcctgtaaccccagcactttgggaggccgagatgggtggatcacgaggtcaggagatcgagaccatcttggctaacacggtgaaaccctgtctctactaaaaatacaaaaaattagctgggtgtggtggcaggcacctgtagtcccagctactccggaggctgaggcaggagaatggcgtgaacctgggagtgagcttgcagtgagccgagatcgtgccactgcactccagcctggatgacagagcgagactccgtctcaaaaaaaaaaaaaaaaTTGTTTTAAGGAAAAGAGATTTCAACCTGTCCTAACAGATATGAATGGCTCTGTGTGCAGAAGCAATGCTGGCTCACATGTCCCTGAGTGTTCACCTTGGTCACTCATGCCCTATTCAGCCTCGAGGTGGGTGCGGCCCCCAACCCCTCACACAGATCAGGCACACAAGGCCCTCGCTCTCCCTCCTGGCCTCACCCTGATCCATCCCCTGGCTTTCCTGCCGGTCCTCTGAGGGCTTTGGTCCCCCACAGCTCGGGAGCTTCCCAGAAAAAGATGGTGGCCCTATCAGGCAGGGCCTTGCGTCATGGA a score=29550.0 s hg17.chr7_random 490784 245 + 778964 CCAGGAGGTGGAGGAGGAATTCAGGGGCAACCAGGCCAAGTTCCCTACCAATGCCTTCTGACATCCCAAGACCCAGACGTGCCCACCTGTGACAAGGCTGAGACCACGGCTCTGAGATGCTCACTCTCCAGGGGTACAGGAGCTCTGGGGTCCTGGGGTCTGACAGATG---CAGACACCACGTGAATGCCAAGGCCGGGGTGCCACCAGCCCTATGTCTGGGTATCCCCTTCCTTGACTTTCAAAAA s panTro1.chr6 489732 243 + 161576975 CCAGGAGGTGGAGGAGGAATTCAGGGGCAACCAGGTCAAGTTCCCTACCAATGCCTTCTGACATCCCAAGACCCAGACGTGCCCACCTGTGACAAGGCTGAGACCACGGCTCTGAGATGCTCACTCTCCAGGGGTACAGGAGCTCTGGGGTCCTGGGGTCTGACAGATG---CAGACACCACGTGAATGCCAAGGCCGGGGTGCCACCAGCCCT--GTCTGGGTATCCCCTTCCTTGACTTTCAAAAA s mm5.chr5 136517473 224 + 149219885 CCCAGTGGTGAATGCGGAGCTTAGATGGA--CTGGCTGCCTTCCC-GCCAACGCCTTCTAATAGCCCCAGA-----GAGAGCCCACCCAGTGCAAGAGCGACACCTTGGCTCCTAGATACCTGC-CTTCAGGTGCACAGTAA--GTAGGATCTTAGAAAACGATTGCTGTGTCAGGC--------AAAGCCAAGGCTGG---GTCCCTTACTGT--GATCCTGAATCTCCTGTCATGACTTTAAAAAA a score=24180.0 s hg17.chr7_random 491029 261 + 778964 CCATCCCTTTAAGCAAATGGTTTGCTTATTGGTTCCAAATATTGAACCCAAGG-ATTTCTGAGAATTGGCCATTTAAAGTCAGCCAGGTGCACCGGTCCAGGTGGGTGAGGTGATCACCAGATCACACCAAGGTAGAGGATGCAGGAGAGGAGTCTGAGACCCCAGCCCGCCCTGGCTTCCTGCGGACTCTGTAGCCATTCCTCCTGTTCCAGGAACCTCCAGTAAACAAATGACTGTCTCCCCAGCCTGTTAAAACTGGGA s panTro1.chr6 489975 262 + 161576975 CCATCCCTTTAAGCAAATGGTTTGCTTATTGGTTCCAAATATTGAACCCAAGGGATTTCTGAGAATTGGCCATTTAAAGTCAGCCACGTGCACCGGTCCAGGTGGGTGAGGTGATCACCAGATCACACCAAGGTAGAGGATGCAGGAGAGGAGTCTGAGACCCCAGCCCGCCCTGGCTTCCTGCGGACTCTGTAGCCATTCCTCCTGTTCCAGGAACCTCCAGCAAACAAATGACTGTCTCCCCAGCCTGTTAAAACTGGGA a score=27466.0 s hg17.chr7_random 491290 222 + 778964 CATGGGTGGGAGCTCCTGCTGAATGCCAGCCGCCATCCATCCTGTGGGTGGTGGACATGAGTGAAGGGTCCCCACAGACCAGAGTGGGCCTGGCCGGCACCCACATGGAGCAGCGGGATGCAGTCACAGAGACGCCCTGACCAATACCGGCCTCAAGCCCCACTCCTGGCCCACCTGCCACGTGCCAGGCACGGCACCCACTCCCCACGGAAGGG-------CAGCCTG s panTro1.chr6 490237 222 + 161576975 CATGGGTGGGAGCTCCTGCTGAATGCCAGCCGCCATCCATCCTGTGGGTGGTGGACATGAGTGAAGGGTCCCCACAGACCAGAGTGGGCCTGGCCGGCACCCACATGGAGCAGCGGGATGCAGTCACAGAGACGCCCTGACCAACACCAGCCTCAAGCCCCACTCCTGGCCCACCTGCCACGTGCCAGGCACGGCACCCACTCCCCATGGAAGGG-------CAGCCTG s mm5.chr5 136517978 218 + 149219885 CTAGTGTGAAAAGTTCTGCTGCCTGCCAGCTGACCTTTGTCCTGGGAGTAGGAATCACAGCAGAAGAGACCTTGTCAAACAGACTTGAGCAGGTTGGC-TCCACA-GGAGATGCTAGGTGTCAGCAAAGA------CCCACTAGCATT-GTCTAGATCTCCCAACCTCCTCTTGCTGACATGTGACAG--CTGGCACCCACTCCTCACAGAGGTGAGTACAACAGCCTG a score=21875.0 s hg17.chr7_random 491512 240 + 778964 GAGAGCTGCTTGTTGCTCCCTCAGAAACAATCCCACCCGCTCCTCACCCAGCCCGATGTGGCCGTCTGTCAATCACAGCCAAGGGCAGTTTCCCCAGAGGCCCCCACTTCTTCTGCAGCTGATGCCCACCTCCATGTGTGCCAATGCCCACCTCCACGTGCACTGATGCCCATCTCCGTGTGCCAATGCCCACTTCTGCATATGCCAACGCCTACCTCCACATGCACCAATGCCCACCTC s panTro1.chr6 490459 239 + 161576975 GAGAGCTGCTTGTTGCTCCCTCAGAAACAATCCCACCCGCTCCTCACCCAGCCCGATGTGGCCGTCTGTCAATCACAGCCAAGGGCAGTTTCCCCAGGGGCCCCCACTTCTTCTGCAGCTGATGCCCACCTCCATGTGTGCCAATGCCCACCTCCACATGCACTGATGCCCACCTCCGTGTGCCAATGCCCACTTCTGCATATGCGAACACCTACCTCC-CATGCACCAATGCCCACCTC a score=9272.0 s hg17.chr7_random 491752 133 + 778964 CACACGTGTGCTGATGCCCTCTGTGTATGCCGATGCCCACCTCCATGTGCTCCAATGCCCACCTCCACGTGCACCAATGCCCACCTCTACGTGTGTGCTGATGCCCACCTCTGTGTACACCAATGCCCACCTC s panTro1.chr6 490698 85 + 161576975 CACGCGTGTGCTGATGCCCTCTGTGTATGCCGATGCCCACCTCCATGTGCTCCAATGCCCACCTCCACGTGCACCAATGCCCACC------------------------------------------------ s rn3.chr1 248924833 133 + 268121971 CAAATACATATTCATGTCCTCTATGTGCACGCTCGTGCTCCTCTATGTGCACGCTCGTGTTCCTCTATGTGCACGCTCGTGCTCCTCTATGTGCACGCTCGTGCTCCTCTATGTGCACGCTCGTGCTCCCATC a score=6161.0 s hg17.chr7_random 491837 48 + 778964 TCTACGTGTGTGCTGATGCCCACCTCTGTGTACACCAATGCCCACCTC s panTro1.chr6 490696 45 + 161576975 TCCACGCGTGTGCTGATGCCC---TCTGTGTATGCCGATGCCCACCTC s rn3.chr1 248924918 48 + 268121971 TCTATGTGCACGCTCGTGCTCCTCTATGTGCACGCTCGTGCTCCCATC a score=4056.0 s hg17.chr7_random 491885 42 + 778964 CATGTGCTCCAATGCCCACCTCCACGTGCACCAATGCCCACC s panTro1.chr6 490741 42 + 161576975 CATGTGCTCCAATGCCCACCTCCACGTGCACCAATGCCCACC a score=2316.0 s hg17.chr7_random 491885 82 + 778964 CATGTGCTCCAATGCCCACCTCCACGTGCACCAATGCCCACCTCTGCCTGTGCCAGCCAATTCTGTCTCCTCAAACACCTAT s panTro1.chr6 490783 40 + 161576975 ------------------------------------------TCTGCCTGCGCCAGCCAATTCTGCCTCCTCAAACACCTAT a score=8052.0 s hg17.chr7_random 491967 70 + 778964 CAGATGCTAATTGCCCAGCCGGGAAGACGCTGAGTACACGGGGATTGCCGGGTGAAGCTTTATGCGATCA s panTro1.chr6 490823 70 + 161576975 CAGATGCTAATTGCCCAGCCAGGAAGACGCTGAGTACACGGGGATTGCCGGGTGAAGCTTTATGCGATCA s mm5.chr5 136518316 61 + 149219885 CAGATCCTGAACACCCAGCCAGGAAA---------CCATAAAGAATGTTCAGCGCCGTTCTACAAAGCTG a score=19450.0 s hg17.chr7_random 492037 88 + 778964 TTTAAATATATC-TTGACGGAGCTTCCCCA---AAAAAAATGGCAGATGGAAAGTGCACGTTTCCTCTTTTCCCTCTAGCGA--CCTCTCGAAT s panTro1.chr6 490893 88 + 161576975 TTTAAATATATC-TTGACAGAGCTTCCCCA---AAAAAAATGGCAGATGGAAAGTGCACGTTTCCTCTTTTCCCTCTAGCGA--CCTCTCGAAT s mm5.chr5 136518377 86 + 149219885 TTTAAAAATATCTTTTATAGAATTTCCCGC---AAGAAGACAGCAGGTGG-----GTGAGGTTCCTCCCCTCCCTCCAGACACTCCACTCTAAC s canFam1.chrUn 1872852 84 + 91062872 TTTAAAAACATCTTTTACGGAACTTCCCAAAACAAAAAGATGGCAGATGGATGGCATGCATTTGTCTCCTCCCCTCCACTAA----------AT a score=52878.0 s hg17.chr7_random 492125 460 + 778964 GACAGCAAAATAAAAATATATGCATATATACATCTACCACAATGACCAGAATGGCAGGAACGCTATCTGA-----------GATTTCTGGAAAACAGACAATGACCTGAAGCATGGAATTTGACATTCAGACGAAGTACGCAGCAGCCCGGGGTATGTGAAGCAGGTTCTCCCGGATCCACGGAGGGAACGGTTCTGCTGCAGAGCCCCACAGAGCAGAGGACAGAGGTGGTGAAAGTCATCA-AGATCCAGACCC------AGGACCACAGGAGCTCGGAAGCCTGGGAGCCAGGCAGCCCC----CCAAGGCCAGGAGCCCAGGTGTCCT-GTGGCT---GCTCCTTCtcttcccttttacagtggaaattcccaaact---acacaagagtagacagagtaatacaatgaatcacca-aacgtccatcacccaccctcaaccattatcaaaatggagccagtcctatttcatttcacctccacccac s panTro1.chr6 491641 460 + 161576975 GACAGCAAAATTAAAATATATGCATATATACATCTACCACAATGACCAGAATGGCAGGAACGCTATCTGA-----------GATTTCTGGAAAACAGACAATGACCTGAAGCATGGAATTTGACATTCGGACGAAGTACGCAGCAGCCCGGGGTATGTGAAGCAGGTTCTCCCGGATCCACGGAGGGAACGGTTCTGCTGCAGAGCCCCACAGAGCAGAGGACAGAGGTGGTGAAAGTCATCA-AGATCCAGACCC------AGGACCACAGGAGCTCGGAAGCCTGGGAGCCAGGCAGCCCC----CCAAGGCCAGGAGCCCAGGTGTCCT-GTGGCT---GTTCCTTCTCTTCCCTTTTACAGTGGaaattcccaaact---acacaagagtagacagagtaatacaatgaatcacca-aacgcccatcacccaccctcaaccattatcaaaatggagccagtcctatttcatttcacctccacccac s mm5.chr5 136518463 406 + 149219885 GATAGTACATT--AAATATGCACATGTATAAATCCACGCCGCCAAGGAGAATGGGAGAGACGCCATCACAAGACTTTAGAGGATTCCTGGAAAAAGGACAGCCAACCTAGGAGTTGGAT----------------------------CCAGGACA---GATATGGGTTTCCCTAGCTTCAGGAAAGAAGTG----CCCTGCAGGATCCCCTGGAACA--------CGGTGG-------CACCC-AGAG-CAGACCCCAGATGAGGAAGGCAGGA---CCAAAATCCAGCCCCTAGGCAGGCCCTGCACCAGGGCCAG--TTCCACGGGCCCTCATTGCT----TCCCTTGGCTTAGCCTTCATTATGGAAATGTTCAAGAT--AATACAAAAGT---------------ATGACTCACCA-AACACCCGGAGCCCGGACCTACCAGAGATCAAAGGAGGTCCACTCC---TCCACTCCCTCTTTAGTCAC s canFam1.chrUn 1872936 384 + 91062872 AATGGTAAAATAAAAACCCAAGTGGATGTAAATCCAC-ACGATGAAGACAATGGGGCCAAAGCCTCAAGAGGGTCCATG--AGTCTCTGGAAAACGGACAGCAA-----------------GTCACTCAGGCAGAGCAAGCCACA--CCAAGA-GTGTGCGGTGG---CCTCCGGATCCAAGGGGGA--------------------CCACTGAGT----------------------CATCCTGGAGCCAGACAC------------------------------TGGGGCCTGGCACCTAC----CCAGGAGGGTGCACACAGGTGGGCTTGCTACCACAGCCCCTT--CCAACCCTCTAATGTGGAAACCTGCAAACTTCTACACAGAAGTAGA-AGAAAGATATAGCAAATTGCCAGAAGGCCCATCACGCATATTCCACAACTATCAAAATAGGG-CACAACGATTTCATCCCCCCTCCACCCAC a score=7624.0 s hg17.chr7_random 492585 62 + 778964 ttcacacag------acacacacacac-acacacacacacacagaggatggaagcaaatctcagataca s panTro1.chr6 492101 68 + 161576975 ttcacacagacacacacacacacacac-acacacacacacacagaggatggaagcaaatctcagataca s canFam1.chrUn 1873320 63 + 91062872 TTtacacac------acacatacatataatatatacacatctataacacacatacatatataaaacacg a score=17109.0 s hg17.chr7_random 492647 186 + 778964 gcatttcattttaaatacttcaatatctagctctaaaatacacttgttaaaacataaccacaatccccattaccaTCtgccatgagttggatgtggtttgtccctcctgaaatttgatcctcaatgtggtgatgttgggaggtCCATGAATGTAACCttttatattaattaatataattCATGTTA s panTro1.chr6 492169 186 + 161576975 gcatttcattttaaatacttcaatatctagctctaaaatacacttgttaaaacataaccacaatccccattaccaTCtgccatgagttggatgtggtttgtccctcctgaaatttggtcctcaatgtggtgatgttgggaggtCCATGAATGTAACTTTTTACATTAATTAATATAATTCATGTTA a score=30307.0 s hg17.chr7_random 492833 319 + 778964 CACATATAACATACACATAACAGTAGGAAGATACAACATGAAAATATCTTAAAAAGAGACA-AAGACAGAGAAAAACCATGTCTGtatatacatatatataacatgt------tatatatatatacacacacatataacacgt-tttatat---ataca------tatatacgtatatatacgtatatatacgtatatatacgtatat--------------atatatatacatatatatatacgtatat----------atatatatatatacgtatatat-atatatat-atatgtatatatata--------------------------tatatacacatatata--------tatatacatacatat----------atatatatatatgtatatatataC s panTro1.chr6 492355 367 + 161576975 CACATATAACATACACATAACAGTAGGAAGATACAACATGAAAATATCTTAAAAAGAGACA-AAGACAGAGAAAAAACATGTCTGtatatacatatatataacatgt------tatatatatatacacacacatataacacgt-tttatat---atatatttatttatata--tttatatatttatatatttatatatatatttatat--------------atttatatatatatttatatatttatat----------atatatttatatatttatatat-atatttat-atatttatatatatatttatataaatatttatatatatatttatataaatatatatatttatatttatataaatatatatatttttataaatatatatatatatatatatataC s canFam1.chrUn 1873466 346 + 91062872 cccatat-atatacacat------------acacaacatgcatatatataaaatacttatgtaatgcatccacaatacacacatgtatgcgtgcatatgtaacatatacCCAACAAACACCTGCACacatgtatataacacatatgcatataccataca------cacatgtgcatatatacacacatatacatatgtacatctatatagtacacacatgtaatgcatatacatacaca-atacacatataACACAGATAAAATACATACATCCCCATATATAATATATACAATATGCacacatataatagcaca------------------tacaca-acacataca--------catacagagacacat----------acacaca---atgtatatgcacac a score=25280.0 s hg17.chr7_random 493152 283 + 778964 CAAAAAcattccaggaggctcaatatctgattaacagcagttccagaaagtaaaataaaatagaaacttgtcagaaataaaagaaaaatttctctaaactgaagaacatgagtgtcttggttgacagagcccacaagattttcagtcctagtaaaaggatctcttacactgtacttccagggataagaattttccaaaagctcccatagagaaaagtcagttcacctacaaaggactgacaataagaataagtcaaacttctcaaaagaaacactagatacta s panTro1.chr6 492722 283 + 161576975 CAAAAAcattccaggaggctcaatatctgattaacagcagttccagaaaataaaataaaatagaaacttgtcagaaataaaagaaaaatttccctaaactgaagaacatgagtgtcttggttgacagagcccacaagattttcagtcctagtaaaaggatctcttacactgtacttaaagggataagaattttccaaaagctcccatagagaaaagtcaggtcacctacaaaggactgacaataagaatggctcaaacttctcaaaagaaacactagatacta a score=32897.0 s hg17.chr7_random 493546 351 + 778964 CTTTGCTCCTTTTACAGCTGCCTAGTAttcttttttttcttttaagagatggggtctcattttgttgcccaggctggagtataggggtgcgatcacagctcaccgcagcctccaactcctgggtttaaggtgtcctctcacctgagcctcccaagtagctgggactacaggcacgtgccaccacgcctgcttatttttattttttattttttaattgatgggtctcgctatgttgcccaggctggtctccaactcctgacctcaagcaatcctcctaccttggcctcccaaagtgctgggattacaggcatgagccgctgcacccgcccTGCCTGGCATTCTCTATATGAA s panTro1.chr6_random 67032603 351 + 67355074 CTTTGCTCCTTTTACAGCTGCCTAGTAttcttttttttcttttaagagatggggtctcattttgttgcccaggctggagtataggggtgcgatcacagctcaccacagcctccaactcctgggcttaaggtgtcctctcacctgagcctcccaagtagctgggactacaggcacgtgccgccacacctgcttatttttattttttattttttaattgatgggtctcgctatgttgcccaggctggtctccaactcctgacctcaagcaatcctcctaccttggcctcccaaagtgctgggattacaggcatgagccgctgcacccgcccTGCCTGGCATTTTCTATATGAA a score=23787.0 s hg17.chr7_random 493897 179 + 778964 AACCCTCGCTCCTTCACCTGTTCCTGCCCAGATGGACGTTTCCAGTGCTTCTG-GTTCCTGCCATCACACGCTGGGCCACGATGGACATGACAGAACTCCCCATGAACAGGGGGCAGGTCAATGTGGCTGCA---CCCCAGTGACTCGAGGCTCACGTTCCACTCACGTGCTTCTACCACAGC s panTro1.chr6_random 67032954 179 + 67355074 AACCCTCGCTCCTTCACCTGTTCCTGCCCAGATGGACGTTTCCAGTGCTTCTG-GTTCCTGCCATCACACGCTGGGCCACGATGGACATGACAGAACTCCCCATGAACAGGGGGCAGGTCAATGTGGCTGCA---CCCCAGTGACTCGAGGCTCACGTTCCACTCACGTGCTTCTACCAGAGC s rn3.chr12 30544691 168 - 46649226 AGCCTCCCTTCTTTCATCCCTCCCTGCCCTGA-GGACTTTCCAGATATTCCCATGTTTATGCAATTACAGAGTGGGCCACAATGAACATTCCAGAGCTCCCC---AGATGAGGGCAGATAAATACGATCGCATCTCCCTATTG--TATGGGCTTGC-TTCCACT--TGCACTTTTGC------ a score=12266.0 s hg17.chr7_random 494076 87 + 778964 CTAAGCAAAGGCAGGGG----TGGGCTGAAACCCTTCCTGGGAGGTTTCAGTCTCCAGAGGGGGCTGTTCAGTCCTTGGTATCAATGAAAG s panTro1.chr6_random 67033133 87 + 67355074 CCAAGCAAAGGCAGGGG----TCGGCTGAAACCTTTCCTGGGAGGTTTCAGTCTCCAGAGGGGGCTGTTCAGTCCTTGGTATCAATGAAAG s mm5.chr2 27699475 90 + 181686250 CTAAGGATATGAAAGGGGAAATGGGATGGCCCCCACCCAGGGAGTCTTCGGGCTCCAGCGAGGGCTGCCCAGTCCTGGGTCTC-CTGAAAG s rn3.chr12 30544859 73 - 46649226 ------------CTGGC----TTGGCCAAGGTGTTTTCTGGGCAAA--CAGTCCCCAAACTGAGGGGTCTGGCTCTCAATGTCAGTCACAA a score=7230.0 s hg17.chr7_random 494163 89 + 778964 CCGACTTTCCACACACCCAGGTG-----CCTGGGCGTGGCCCCGCTCAGAGCAGCCCCTCCTGGAGTGCCTCTTAAAT------GAGCCTCACTGG-GTTG s panTro1.chr6_random 67033220 89 + 67355074 CCGACTTTCCACACACCCAGGTG-----CCTGGGCGTGGCCCCGTTCAGAGCAGCCCCTCCTGGAGCGCCTCTTAAAT------GAGCCTCACTGG-GTTG s rn3.chr12 30544932 95 - 46649226 --ATGTTTGCACTTACCAAAGTAGGCTTACTGGGCACAGCCTTCTGTGGGACA----TTATTGAAGGGCCCCACATATATCTGCAAGCACAACAGTCATTC a score=15165.0 s hg17.chr7_random 494252 121 + 778964 CTCCGTTGGCCACACAGGTGTCCCT----CATCTCCCCAGGGACGGA---GGAACAC--AGTCCCCAACTCTCTGTGATCAGCAGAGCCCAGAGAGCCCAGCCTCGTGTACCAAAAAGGTCTGGGAGCCC s panTro1.chr6_random 67033309 121 + 67355074 CTCCGTTGGCCACACAGGTGTCCCT----CATCTCCCCAGGGACGGA---GGAACAC--AGTCCCCAACTCTCTGTGATCAGCAGAGCCCAGAGAGCCCAGCCTCGTGTACCAAAAAGGTCTGGGAGCCC s rn3.chr12 30545027 123 - 46649226 CCCCCCCCGCCCCCCAGGCTTAGCTGCGCGGCCATCACAGAAACAAACTGGGGACATGGAGTCGCCAA--AAATGCCACCTGAGGAGCC----AGGCTGGGTCTCACTTACCACAGAGGCTTAGAAG-GC s canFam1.chrUn 1821739 100 + 91062872 CCCTACTGACCACACAGGCATCCCA---CTCCCTCCCTGGGTACAGA----AAAAAC-----------------------AACAAATCTCAGAGAGCCCAGCCCCACTTACCGAAAAGTGCTGCTAGCCC a score=2266.0 s hg17.chr7_random 494373 18 + 778964 CATTTTTCTTCAGAGGAA s panTro1.chr6_random 67033430 18 + 67355074 CATTTTTCTTCAGAGGAA s rn3.chr12 30545150 18 - 46649226 AGGTTTCCTTCTGAGAAA s canFam1.chrUn 1822080 15 + 91062872 CATGTCTTTTGGAAG--- a score=12570.0 s hg17.chr7_random 494391 106 + 778964 ATGTTAATGCCCGAATGTCACCAGCTCATCGCCG--------ACAAAGGCCTGAACACAAACGTCTCCAGGCAACAGCCCCGAGGTGAGGTCAGCTCTGTCCATGTCCCCACCG s panTro1.chr6_random 67033448 106 + 67355074 ATGTTAATGCCCGAATGTCACCAGCTCATCGCCG--------ACAAAGGCCTGAACACAGACGTCTCCAGGCAACAGCCCCGAGGTGAGGTCGGCTCTGTCCGTGTCCCCCCCG s canFam1.chrUn 1822095 106 + 91062872 AAGCTAACACTC--------CCAGTGCACCCCCGTCCCCATTATCAAGGCTTGGACACGGCTGTGTGCAGGATAGATGCCCATGCTCCCACCAGCTTGGCCCATCCCCCCACTG a score=59395.0 s hg17.chr7_random 494497 271 + 778964 CACGGCTTCACCCTCTTTTTCCACTGTCTGCCCCTT-TCACACAAAACCCCCATGGCTTCCTCTTTCTCTCAGCACTTAATGGCATTAAAAGGCCCTGGCCTCTTCTGTCTGTA-----AAAAACAGTTTTCTCTTCTCATCCAGCAGTCA-CTCTGGAAGGTT-ACGTGAAGCTGCTGGCTCAGATTTTAAATCGTCTCACATGTG-------GGTT---GCCCCACCTACCCCA----TCAACAAACACAGCTTCGCACTTCTGCATCAGAGGCTGTGCTGGGTTCTGGGG s panTro1.chr6_random 67033554 271 + 67355074 CACGGCTTCACCCTCTTTTTCCACTGTCTGCCCCTT-TCACACAAAACCCCCATGGCTTCCTCTTTCTCTCAGCACTTAATGGCATTAAAAGGCCCTGGCCTCTTCTGTCTGTA-----AAAAACAGTTTTCTCTTCTCATCCAGCAGTCA-CTCTGGAAGGTT-ACGTGAAGCTGCTGGCTCAGATTTTAAATCGTCTCACATGTG-------GGTT---GCCCCACCTACCCCA----TCAACAAACACAGCTTAGCACTTCTGCATCAGGGGCTGTGCTGGGTTCTGGGG s rn3.chr12 30545205 284 - 46649226 CTTGGCTCTACCCACTCCTCCTGCCTCCTTCCAACT-CCAGACAAACCTAATCCCTCCCCCTCCCTCTCTTAGCACTTAATGGCATTAAAAGGCACTGGACTCCTCAGCCTCTAAGAAGAAAAACAGTTTTTCACACTGATCCGGAAGTCACCTCCAGAGGGTTCAACTGAAGCCACAGGCAGAAATCATAAACAGCCTCCCATTTGGAAACCTGATC---GATCCACCCTCTCTT----TCGACAATGCTGGCCGCTCAC-AATGCGGCAGTGGCTGGGATGGGCTCTGGGG s canFam1.chrUn 1822201 276 + 91062872 ---AGAGGCCCCCTCTTTTCCCATCTTCTGCGTCTTCTCAAACAAAACCCA----ATTCTTCCTGCCTCTTAGCACTTAATGGCATTAAAAGGACCTGTCTGCCTCTGCCATGA-AAAGGAAAACAGTTTTCTATTCTCATCTGGAAGTGACCTCTGGAAGGCTTTGCTGAAGCTGCTGCCT-GCATCCCAGGGAGTCTGACACGTG-------GGTCCCAGTGCCACCCCCACCAGGGTCCAGGACACTGGGCTCAGCACTCCTGCATTGGGCACTGTGCCAGGTGCAGGG- a score=32246.0 s hg17.chr7_random 494768 233 + 778964 ACACGGAAGGCCCCCAGCTCTCAGGCCTGGTAAGAGAAAGAAAAACACGAAGACATTCCAGCCGGCCCTTCCTGCGGGGGCCGAGGGCAGAGCCC---CTGGTCTGTCTcttgctccatc--ctcacccgcccctatgaggtcagcactgctgttccgtccagtttccagataaggaaac--aagacacaaagtaacttcacccaaggtcaagaagccaggaagaggtgaagtcaggCTG s panTro1.chr6_random 67033825 233 + 67355074 ACACAGAAGGCCCCCAGCTCTCAGGCCTGGTAAGAGAAAGAAAAACACGAAGACATTCCAGCCGGCCCTTCCTGCGGGGGCCGAGGGCAGAGCCC---CTGGTCTGTCTCTTGCTCCatc--ctcacccgcccctatgaggtcagcactgctgttccgtccagtttccagataaggaaac--aagacacaaagtaacttcacccaaggtcaagaagccaggaagaggtgaagtcaggCTG s canFam1.chrUn 1822477 215 + 91062872 ACA-----------CAGTGCTCGGGGCTGCTAAGACACAG--AAACATGAAGATATGACAGTCCTCAGTCCATG-AGGCCCCAAGGACAGAACCCGTGCTGGCCAAGCGCC--CTTCATCTGCCCACTTGCTC---TGAGGTCAGAACTGTGG--CTGTCT--TGTCCAGACTAGGAAACCAGAGACACTAAGCAACCCTG-CCAAGGCC-AGCAGCTGGGAAGAGGTGAGGCCAGGCCG a score=4129.0 s hg17.chr7_random 495001 43 + 778964 AAGCCCCTATCATGAACGCTCCTCCACGGTCTGGCTTCCCTAT s panTro1.chr6_random 67034058 43 + 67355074 AAGCCCCTATCATGAACGCTCCTCCACGGTCTGGCTTCCCTAT a score=12643.0 s hg17.chr7_random 495044 133 + 778964 AGGGGCAGAGCCCTCCTCCGAGCAGAGCATGTGcctccctctcgtccacccctccctctctctgtctctctctccatcTGTGCCCTGGACTGGTCTCTAAGCTGGGGATTGAGGGCCTGAGCGTCTGGGACGG s panTro1.chr6_random 66562060 133 + 67355074 AGGGGCAGAGCCCTCCTCCGAGCAGAGCATGTGCCTCCCTCTCGTCCACCCCTCCCTCTCTCTGTCTGTCTCTCCATCTGTGCCCTGGACTGGTCTCTAAGCTGGGGATTGAGGGCCTGAGCGTCTGGGACGG a score=14311.0 s hg17.chr7_random 495177 109 + 778964 CCACCCCCAGCTCTCT---CTGGGCAGGCGTCC--------AGTAAGGAGCCCCTGCTATTTGGGTCAGGGCTGGCCAGTGGTGCTGGGTCAGGACAGTTTCCAGGAAACGGCCTGTCCC s panTro1.chr6_random 66562193 109 + 67355074 CCACCCCCAGCTCTCT---CTGGGCAGGCGTCC--------AGTAAGGAGCCCCTGCTATTTGGGTCAGGGCTGGCTGGTGGTGCTGGGTCAGGACAGTTTCCAGGAAATGGCCTGTCCC s canFam1.chrUn 1823590 109 + 91062872 CCTCCCCCCTCCCTCTGTACGGGGCAGGCCTCTGCACTGGGGACCAGGACCCAGAGAGATCTGGGTCAGGGA-----------GCAAGGTCAGGATGGTGGCCAGGGAATGGGTGGTCTT a score=1924.0 s hg17.chr7_random 495286 9 + 778964 GGGTTCCAG s panTro1.chr6_random 66562302 9 + 67355074 GGGTTCCAG s rn3.chr12 30545638 9 - 46649226 GGGCTCTCC s canFam1.chrUn 1823699 9 + 91062872 AGACCCCAG a score=58274.0 s hg17.chr7_random 495295 389 + 778964 ------TCCTACCTGG----------------CCTGTGGCTCAGAGATCACAAA---------------------------CCTTTTGAAAGCCCCTGCCCACACCACTCCCGATC-CTGATGCCTCCCCCTCCTGCAACACCTCAGTTCCTGTGC-TTCTCACTCCA----CGGATGGCTTCC---------------------GCCTCCCACAGCTGACTGAGCTCTC---AGATGGAGACCACATGTTCCTTGCAGGCTCTAGTGCCCAGCCCGGGTCTGACGCAGA--AGCTCCTCAGCACAATAtggat-----------ggttgga---tgggtgggtggatgaatggatg----agtgaatggacacatggatgtacaggtgggtgagtagacgaatgaatggatggatggatggatggatggacaggcgggtggat------tgaacaggtgggtgagcggatggatggatggacaaatgggtgag s panTro1.chr6_random 66562311 364 + 67355074 ------TCCCACCTGG----------------CCTGTGGCTCAGAGATCACAAA---------------------------CCTTTTGAAAGCCCCCG-CCACACCACTCCCGATC-CTGATGCCTCCCCCTCCTGCAGCACCTCAGTTCCTGTGC-TTCTCACTCCA----CGGATGGCTTCCACCTCCCACAGCTAACTCCCTGCCTCCCACAGCTGACTGAGCTCTC---AGATGGAGACCACATGTTCACTGCAGGCTCTAGTGCCCAGCCCAGGTCTGACGCAGA--AGGTCCTCAGCACAATatggat-----------ggttgga---tgggtgggtggatgaatggatg----agtgaatggacacatggatgtacaggtgggtgagtagatgaatgaatgaatggatgga---------------------------------------------------tggatggatggacaaatgggtgag s mm5.chr5 136473718 316 + 149219885 ------TCTCACTTGG----------------CCTGTGGCTAAGAG--CACAAA---------------------------CCTTTTGAAAGTCTTTACCTAGGCCATCGCCCCTCACCAACATTCCTTCCTCCCGCAGCACCTCAGCTCTGGTGCTTTCTTAGTCTA----------------------------------------------AGTGGACAAGG--------AGATTGAGA-----------------------------------GGATGGACGGACA---------------AATAGGGA---------------CAGG---TGGGTGGATGGATGAATGGGTG-TCAACTGGATGAAAGGATGGGTAGGCAAGTGGATGGGTGAAGGGATGAAAGAATGAATGGATATATGATTGGATAGGTGTATGGACAGGTAATGGAAGGATAGATAGACATTCGGATAAATGAACAA----GTGAG s rn3.chr12 30545647 300 - 46649226 ------CCTGGCCTCC----------------CCTGTGGCCAAGAG--GACAAA---------------------------CCTTTTGAGAGCCTTTACTTAGGCCATTGGTCCTCACCAATGTCTCTTCCTCCTCCAGCACCTCAGCTCTGGTGCTTTCTCAGTCTC----------------------------------------------CGTGGACAAGG---------GATGGAGA-----------------------------------GGATGGACAGACA---------------AATAGGGAC---AGGCC--AGGTTGGA---TGGGGGGATGAATGGATGGAAGGCCAATTGAATGAAAGGGTGGGTAGATGGGTAGATGG--CAAAGGATGAAAGAATGAATGGATTGATGAGTGGATGGGTGTGTGGACAGGT----------------------------GATGGGAGAAAGGGTGAA s canFam1.chrUn 1823708 450 + 91062872 CCACACCCTGGCCTGGACCCAAGCAGAGCCACCATGATGCTCAGGGCCTGCAAAGTGCTGGTTCCCTCCAGGTGGCCCATGGCCCTTGGAAGCTCCCACCTGAGTCACTCCTCATA-TTGGCACCTCTccttccctgggttcctcagctcttgccc--tctgacccctgtacctgacagtgtcc------------tgacttcctcctcccc--agctgactgtgagttctgagaacaaagactgcgtcatcactgca---------gcctgacacacatctgattcacagtaggtccttggtacaatatggatggaaGGCTAGAGGTCAgatggtgggtggatggatgggtgggtg----gatgggtggaagagtggatgtgtggaaggaagggtagaaggatg-gtgaatgggggagcagatggaagggtagaagggtgggt------------ggtgggtgggtggTGGGAACAGTGGATGGA-GGATGAG a score=21148.0 s hg17.chr7_random 495684 88 + 778964 tagatgaatcgatggatggaTGGACAGGTGGGTGGATGAACAGGTGGGTGAGTAGATCAACggatg------------gatggatggatggacaggtggg s panTro1.chr6_random 66562675 100 + 67355074 tagatgaatcgatggatggatggacaggtgagtggatgaacaggtgggtgagtagatcaacggatggatggatggatagatggatggatggacaggtggg s mm5.chr5 136474034 80 + 149219885 TAGTTGAATGGATGGATAGGTGGACAGGTGAG----TGAGCAGATGGATGGGTTGGT----GAGTG------------GATGGGTTTGTGGGCAGATGGG s rn3.chr12 30545947 81 - 46649226 TAGACAGACATACAGATAAATGAACACGTGAG----TGGACAGGGGGGCGAGCAGACGGATGGGTT------------CGTGGATGGATGG---GGTGGG a score=16381.0 s hg17.chr7_random 495772 230 + 778964 tggatgaacaggtgggtgagta-------gatcaacggatgga---tggatggatggatg-------gacagatggatggacggacaggtgggtggatgaataggtgggtgagtagaataacggatggatggatggatg----gatggatggacggacaggtgggtggatgAACA--GGTGTGTGAGTAGA---TTTGAGTAGATTAatggatggatggatggatgtaaggatggat-gatggatggatggacaggt s panTro1.chr6_random 66562775 213 + 67355074 tggatgAACAGGTGGGTGAGTA-------GATCAACggatgga---tggatggatggat-----------agatggatggacggacaggtgggtggatgaatagatgggtgagtagattaacggatggatggatggatggatagatggatggacggacaggtgggtggatgaata--ggtggg-------------tgagtagattaatggatggatggat--------ggatggatagatggatggacggaCAGGT s mm5.chr5 136474114 226 + 149219885 TTGATGGATAGACTACAGAGTAAGATAGGGAAAAAAGAATAGAAAGTTGCTAGATTGATGCTTTCCACCCAGATATAAGGGAGAACAG------AGATGCAAAAGGCAGTAGGAGGCCTTCTGTGTGGATGCTCAGGCA----GGCAGA------GACAACCCAAGGCAGGAATAATGGAGAGTAAGCAAGCATTATCAGTGAGTTGGTGGATAGGTAGAT--------GTATGGAT-GATG------TGGACAGGT a score=2119.0 s hg17.chr7_random 496002 112 + 778964 gggtggatgTACAGGTGGGTGAGTAGATCAACggatggat----ggatggatagatggacaggtggg-------tggatgaacaggtgggtgagtagatcaacggatggatggatggatagat s mm5.chr5 136474340 114 + 149219885 GAATGGAT-----AGTGGGTAGATAGATATACAGATGGGTTCCAGGATTGGT-GGTGGACAGGTGGAATATGGCTAGATGAAT-GGTAGGTGA-TGGACC-ATGCACAAGTGGGAGGACAAAG a score=1705.0 s hg17.chr7_random 496114 10 + 778964 ggatggacgg s panTro1.chr6_random 67035165 10 + 67355074 GGATGGATGG s mm5.chr5 136474454 10 + 149219885 AGAAAGACGG a score=194889.0 s hg17.chr7_random 496124 2320 + 778964 acaggtgggtggatgaataggtgggtga---------gtagattaacggatggatggatggat-------------------agatggatggacggacaggtgggtggatgAACAGGTGTGTGAGTAGATTTGAGTAGATTAatgga----tggatggatggacaggtgggtggatgtacaagtgggtgggtggatggatagatggatggatggacaggtgggtggatgaacaggtgtgtgagtagatttgagtagattagtggatggatggatggatggatgtaaggatggatgatagatggatggatggacagctgggtggatgaacaagtgggtgggtggatggatagatggatggatggacaggtggatggaccgacagatgatggatgggtggctattagaggagaggaaggaagggaaaagtgaatgaaaaaacggatgcctggaaggatgaatggaaggatggCACTGCCTCTTTAAGGGCATTGCAACAAATATCAAAAGCTGCTGGAGTGGCCACCCTTGGGACCCTCAGTTCCACATTTAGGAACTTGAAGAAACAACGGGATGACTATGAAAAGATGTAAAAATATTGTAATAATATTCACCGAAGCACTGCCAGCAACAGAGGCTTTATTAAATAAACGACACTGAAAAGATGTGTGTGTGTAATAATATTCACCGAAGCACTGTCAGCAACAGAGGCTTTATTAAATAAACGACAATGAAAAGATGTGTGTGTGTAATAATATTCACCGAAGCACTGTcagcaatacaggctttattaaataaatcacagtccttctcaacaacctaacaccgcgtggtcattaaaaatggtggtgtagatacatgtaacaaggaataaaggtgttcacagtgttgccagtgaaaatagggtgtcaatgaaactgtacaatttaaaaacacaaccataaagtaaataacctagaggctatgcaccgtaaggctaatagcaactgtggggtggagagggggtgaggttggggtcattttcatgtgtttttttctttttcttttgttttttttttttt----gattacttgtactgacgtgtattttctaattttctataattaCATTGTAAATCTGTGTAATTTTAAAAATGAGGCCGTTCATCATTGGAGAAAACACGACACGTACGCTTAAGGGCAGACTTAAGGCTCTTAACATTTTTAAAGCAACCAAAAGAGGCAAAATGTAGACTTTAAAACACAAAAATGTGCTTTTCTGAGTGTGGCACAGACTCCAAGCCCACAACGTCTGAGGAAGCGTACGGGATCAGAACCAGCAGCTCCGTTCACAGCCAAACTCGCCTTCAAAAGGCAAGGAGATGGCGCGCCAAGCTCAGCCCCTGAAATCACACACGCGGGGTTGAACGTGAGTAACTCAGCCCATCGTTCCGCACTGTGAATCTGCTCCAATACCTGCAGAGACAGGTCCAGCTCCCACTACGAGGGCCCACCGACCAACACGGTACACCGAGGGTGAAAAAGCCACGACCAGGCCCGCCTGGAAAACACCATCAGCTCCTAGAAATGCCACTTCCTTCCTCCTCCCGCCGCTCCGGGCCTCCCGAGCCAAGACAAGCGCAGGTTGGGACTTGCACGGGAAAGCTCACCTGAGAATGTTTCCAGAAACCCCTCCCCAGCCTGCAGAGACCTCTCCCGGCCCCAGGACAGGGAAGCCTGCGGAGCCAAGAGGGTGCAGTGCTGGGAGGTCCCCGCAGGGGCAAGCAGGGCTGCCACCAAGCGGGTGGGAGACACCCAAGGACTCGTCCACCACCCAGGGAACCGGACTGTGAGGTTCAGGTCAGCATGGAGGGCGGGAGGCGTGGCGCCCACAGAGGGGAGGGGAGCCAGGCCCAGATGACAGACGCCTGCAGACTCCACGCCCCGCACGCCCGACCAGGACAGGCCAACGCAGGGCTGGGCACTTCTTCGGACTCACAGGAAGCCTCTGTCCATAGTCTGGCTACATCTGCCCAACCTCAGCCACTCAGGACTGTC--TACACAAAACACTCAGCAGCATATACGACAGGATGCGCAGAATGACAGATTCAACCTGCCTCATCAGCTCCAAGATGGTGGAACACGGCTAAGACCCAGGTCTTCTGACAAAAGGCTGGGTTGAATGCCTTTCACCTGAGAGaacgccccgtttacatcccctcctctgaacttcaccgccacaggccccattactgccccacttcacagacaaggaagctgaggcttaggaagctgacatgGGCCAGATGTGGTGggtggctcatgcctgtcatcccagcactttgggagaccgggcaccataaggaggtgaaaggatcg s panTro1.chr6_random 67035175 2250 + 67355074 ACAGGTGGGTGGATGAACAGGTGTGTGACTTTTTTGAGTAGATTAatggatggatggatggatggatgtaaggatggatgatagatggatggatggacaggtgggtggatgaacaagtgggtgggtggat--------------ggacagatggatggatggacagatgggtggatgaacaagtgggtgggtggatggacagatggatggatggacagatgggtggatgAACAGGTGTGTGAGTAGATTTGAGTAGATTA----atggatggatggatggatgtaaggatggatgatagatggatggatggacagctgggtggatgaacaagtgggtgggtggatggatagatggatggatggacaggtgggtggaccgacagatgatggatgggtggCTATTAGAGGAGAGGAAGGAAGGGAAAAGTGAATGAAAAAACGGATGCCTGGAAGGATGAATGGAAGGATGGCACTGCCTCTTTAAGGGCATTGCAACAAATATCAAAAGCTGTTGGAGTGGCCACCCTTGGGACCCTCAGTTCCACATTTAGGAACTTGAAGAAACAATGGGATGACTATGAAAAGATGTAAAAATATTGTAATA--------------------------------------------------------------------------ATATTCACCGAAGCACTGTCAGCAACAGAGACTTTATTAAATAAACGACAATGAAAAGATGTGTGTGTGTAATAATATTCACCAAAGCACTATCAGCAATACAGGCTTTATTAAATAAATCACAGTCCTTCTCAACAACCTAACACTGTGTGGTCATTAAAAATGGTGGTGTAGATACATGTAACAAGGAATAAAGGTGTTCACAGTGTTGCCAG----------------ATGAAACTGTACAATTTAAAAACACAACCATAAAGTAAATAACCTAGAGGCTATGCACCGTAAGGCTAATAGCAACTGTGGGGTGGAGAGGGGGTGGGGTTGGGGTCATTTTCATGTGtttttttctttttcttttctttttttttttttttttGATTACTTGTACTGACGTGTATTTTCTAATTTTCTATAATTACATTGTAAATCTGCGTAATTTTAAAAATGAGGCCGTTCATCATTGGAGAAAACACGACACGTACGCTTAAGGGCAGACTTAAGGCTCTTAACATTTTTAAAGCAACCGAAAGAGGCAAAATGTAGACTTTAAAACACAAAAATGTGCTTTTCTGAGTGTGGCACAGACTCCAAGCCCACAACGCCTAAGGAAGCGTACGGGATCGGAACCAGCAGCTCTGTTCACAGCCAAACTCGCCTTCAAAAGGCAAGGAGACGGCACGCCAAGCTCAGCCCCTGAAATCACACACGCGGGGTTGAACGTGAGTAACTCAGCCCATCGTTCTGCGCTGTGAATCCACTCCAATACCTGCAGAGACAGGTCCAGCTCCCACTACGAGGGCCCACCGACCAACATGGTACACCGAGGATGAAAAAGCCACGACCAGGCCCGCCTGGAAAACACCATCAGCTCCTAGAAATGCCACTTCCTTCCTCCTCCAGCCGCTCCGGGCCTCCCGAGCCAAGACAAGCGCAGGTTGGGACTTGCACGGGAATGCTCACCTGAGAATGTTTCCAGAAACCCCTCCCCAGCCTGCAGAGACCTCTCCTGGCCCCAGGACAGGGAGGCCTGCAGAGCCACGAGGGTGCAGTGCTGTGAGGTCCCCGCAGGGGCAAGCAGGGCTGCCACCAAGCGGGTGGGAGACACCCAAGGACTCGTCCACCACCCAGGGAACCGGACTGTGAGGTTCAGGTCAGCATGGAGGGCGGGAGGCGCGGCGCCCCAAGAGGGGAGGGGAGCCAGGCCCAGATGACAGACGCCTGCAGACTCTGCACCCCGCACACACGACCAGGACAGGCCAACGCAGGGCTGGGCACTTCTTCGGACTCACAGGAAGCCTCTGTCCATAGTCCGGCTACATCTGCCCAACCTCAGCCACTCAGGACTGTCTGTACACAAAACACTCAGCAGCATATATGACAGGATGCGCAGAATGACAGATTCAACCTGCCTCATCAGCTCCAAGACGGTGGAACACGGCTAAGACCCAGGTCTTCTGAGAAAAGGCTGGGTTGAATGCCTTTCACCTGAGAGAACGCCCCGTTTACATCCCCTCCTCTCAACTTCACCACCACaggccccattactgccccacttcacagacaaggaagctgaggcttaggaagctgacgtgGGCCAGATGTGGTGggtggctcatgcctgtcatcccagcactttgggagaccgggcaccataaggaggtgaaaggatcg a score=24449.0 s hg17.chr7_random 499627 346 + 778964 ggcaggagaatggcatgaacccgggaggcagagcttgcagtgagccgagatcgcgccactgcactccagcctgggctacagagcaagactccatcaaaaaaaaaaaaaaaa--aagaaagcaagaaaggaaggaagaaagggagggagggaaagggagagagaaagagaaaaaaggaagagagaaagagagaaaaaaaggaaga----aagaggcaga--------gaaagaaagaaaaataaaaaaagaaacagaaagagagaaagagggagagagaaagaaaaaggaagaaagagagagagagagagagagagagaaagCAGCTGAGGCTGAGGCTGAGCCCAGGCAGGGGCTGTGCT s panTro1.chr6_random 67038412 336 + 67355074 ggcaggagaatggcgagcacccgggaggcagagcttgcagtgagcggagatcgcgccactgcactccagcctgggctacagagcaagactccatcaaaaaaaaaaaaaaaagaaagaaagcaagaaaggaaggaagaaaggaagaaag--aaagggagggagaga-------aaggaagagagaaagagagaaaaaaaggaagagagaaagaggcagaaagagagagaaagaaagaaaaa-gaaaaaagaaagagaaagagaga--gagggagagggaaagaaaaaggaagaaagagagagagaga------------aagCAGCTGAGGCTGAGGCTGAGCCCAGGCAGGGGCTGTGCT a score=97755.0 s hg17.chr7_random 499973 889 + 778964 CTCACCACTGCCAAGACCCTCCCAGGCCCAGCCCTGCCCGC------GGGTGCACACGCAGAACACACTGGG----TGGGTCTCAGCCCCTCTTGGCTGCAGGTACAGGCCCTGTCTGGTGTAGTGGGTCCTCGCCCCAGGTCCTGGCCCCCTGTGCTGGAGGCAGCCCCCTGGCTCTCACTGACAAAACGAGGTCACTCC-GGACAGACTCGCAGGGCCTGGAGAGGTCAGAG---ATCTCCATCAACCACAGACCACCGCAGATGGGGGACCTTCCTTCCCCCTCCACCTGCCCAGAGTCACG-CTTCCACCTCTGGCCAAACGCAGCCACCACCTGTGCCC-ACCAGGCCTGCCTGGCTCACTTTGTCCTCACTGATCCGGGGGACCAGGGGACCAGCTGGGAAACAGTGATGGAGCCCAGGGTCTCTCCGGAGCTGCGTCCTGCCAGCCGGCGGGGCTCATCCAAGCTAGGCAGGCCTGGCTTCCTCAGGCTGTGGTCCCAGAAGCACGCTCCACCCAGTTCTGCTGTGGCAGCCATCGCACAGCGGCTCCTCACCGGCCACCAGACCCCAGTGCCACGCACCGCTTTGGCTGAGGGTCCGTCGGCCTCCCTCCCTGCTGACG-GCTACAACTTCACAGCCCAGC-CTTTTCCCTCCACACCCAGCTCTAAGGTGTGG----TTCCCAGTCATGCCCGCGGCATCGATGTTTTCAAA-GACACATTCAGGACAAGATCTGACCCTTGAAGCCAAAA-GCCATCCATGAATCCCAACCTCATGTATTTTTGGGAAAAAAAGTACAAATGGGGTGAAGCGCCTCGGGCCCTTTATTCTCCATCCAATCAAA----ACAGCCAAGTGCTCATCCCGGGTAATTTAAACAACAAGGAAAGTTTGGGGTTTTCTTGTT s panTro1.chr6_random 67038748 890 + 67355074 CTCACCACTGCCGAGACCCTCCCAGGCCCAGCCCTGCCCGC------GGATGCACACGCAGAACACACTGGG----TGGGTCTCAGCCCCTCTTGGCTGCAGGTACAGGCCCTGTCTGGTGTAGTGGGTCCTCGCCCCAGGTCCTGGCCCCCTGTGCTGGAGGCAGCCCCCTGGCTCTCACTGGCAAAACGAGGTCACTCC-GGACCGACTCGCAAGGCCTGGAGAGGTCAGAG---ATCTCCATCAACCACAGACCACCGCAGGTGGGGGACCTTCCTTCCCCCTCCACCTGCCCAGAGTCACG-CTTCCACCTCTGGCCAAACGCAGCCACCACCTGTGCCC-ACCAGGCCTGCCTGGCTCACTTTGTCCTCACTGATCTGGGGGACCAGGGGACCAGCTGGGAAACAGTGACGGAGCCCAGGGTCTCTCCGGAGCCGCGTCCTGCCAGCCAGCGGGGCTCATCCAAGCTAGGCAGGCCTGGCTTCCTCAGGCTGTGGTCCCAGGAGCACGCTCCACCCAGTTCTGCTGTGGCAGCCATCGCACAGTGGCTCCTCACCGGCCACCAGACCCCAGTGCCGCGCACTGCTTTGGCTGAGGGTCTGTCGGCCTCCCTCCCTGCTGACG-GCTACAACTTCACAGCCCAGC-CTTTTCCCTCCACACCCAGCTCTAAGGTGTGG----TTCCCAGTCGTGCCCGCGGCATCGACGTTTTCAAAAGATACATTCAGGACAAGATCTGACCCTTGAAGCCAAAA-GCCACCCATGAATCCCAACCTCATGTATTTTTGGGAAAAAAAGTACAAATGGGGTGAAGCGCCTCGGGCCCTTTATTCCCCATCCAATCAAA----ACAGCCAAGTGCTCATCCCGGGTAATTTAAACAACAAGGAAAGTTTGGGGTTTTCTTGTT s canFam1.chrUn 1824469 719 + 91062872 CTGACCACT-------CCCTCAAGGTCCCATTCATTCTTGCCACAGAAGGTGCACA-ACAGAACACACCAGGGTGTGGGGTCTCTGCTCTCTCTGGCCATGCATCCAAGCCCTGACTTATG-GGTGGGTC--CACACTGAGGCATGG-CCTCTGCAAAGGAGGCAG-CCCCTGGCTCTTGCTAGCAGGACCAG---ACTCCTGGAGATACTC-TAGGGC--AGGAAGGCTGGAGGGTACCTACACTTACCA----------------GATGACTTTGTGT-------CAATGGCAGAGCGTCACATCCCCTGCCCTTGAGCACACCTGGCTGTCACTTGAGCCCTGCCAG--CTGACTAGTTCCCTGGGTCCTCTGTGACCTGGTGGTCT----------------------------TCCCAGAG-------AAAGTTGGGTGCTGCCGACCAG-GGGTCTCATCCTG-----------------------------------AGAGCTACACTC--CCTGGTT---------------------------------CCAGCAATGAGGCCACAG------GCACCAACTGGGCT---------------------CCTGGAGACATGTGTCACCTTCACAGCCTAGAGCCCTTCCCTTCCTGCCTGACTCCCATGGGGGGAGGCTTCCTGACTATTCACTTAG-ATTCATGTTTTCAAA-GACACATTGAAAATGAGGTGTCACCCTTGAGGTCAGAACCCCACCAACGAGTCTCAGCTTAGTGTATTTCCAGGAAAAACAATGCAA--TGTTTGTTTCATCTTGGGGAGGCT-CTCCCCACCAAATAAAGTGTTATAGTGAA-TCCTCATCACA---------------CAGGAAAGTTTGGGGTTTGTTTGTT a score=136543.0 s hg17.chr7_random 500862 1494 + 778964 TATTTTAAAATCTAAACCCCAACACCCAAGTGCttttttttttttttttttttt----gagacagagtctcgccctgtcgaccaggctggagtataatggcacgatcccagctcactgcaacctccacctcccaggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaagcacacgctgccatgcccagctaatttttgtgttttcagtagagacaggggtttcaccatgttggccaggctggtctcgaactcctgacctcatgatccacctgccttggcctcccaaagtgctgggattacaggtgtgaggcaccacgcAGGACCAAGTGCCttttttttttttt-tttttaaagagaccgagtctcactctgccacccaggctggagtgcagtggtagcatcacagctcacttcagccttgaccttctgagctcaagcgatcctcctgccttagcctcccaagcagatgggaccaccagcccgaaccaccacccccaactaaCGAAGTGCCATTTTAAAAGCAAGCTAATTTTTGGTGTGCAAATGCATGTGTTGGGCACAACCTATTGCTTAGTCACTTGCTCAGACCCACACTAACATCAGGCCAGCTGGTCAAGTCCCACCCAGCCCTGTAGGTTAAGAACAGTCACACTGGGTGATGGGTCCTTGTCACCGACTGTCACCCTGGTCCATTCCAGATACTCTCCCGGCCCCAGCTTTCCATCTGTTTCCCCCGTCCTGGCAGGAGGCAGAGCCTGGGCCTGTGAACCCAAGGGGTGGCAGCAGGCACTAGGCCCCTCCCGGAGCAGAGCCCAGGACGTGGCAGGTCAGACGGAAAGCAAACCCCTCCTGGGCCCCGCGTAGCACTCACCCAGCTGGAACTCGCAGCCTCTATCCGGGCAAAGGGCTGTATGGGAAAGCCTAGACACCCCGCCCCTGCACAGACACCTCCAGTTTCTCTTAAAACACAGACTCTTGAGCTGTGTTCACTTTCCCCAAGCCTGGAGGGCTCCAGGGAAGCAGAGGCCCCACCCACTTTCCCCCACCCTCCGCCTGGGACCCCCTCACCGCCCCCACCAAACCCAGGACCAGTGCAGGCTCCTCCCCACCAGCGGTAAGTGCCGGAGTGAGGGTGGGAGAGGTGGAGGCAGGGCAAGGTCCAGGAACACAGCCCGCACACCCATATCCCTGCACTCAGCTCACAGGCAGCCACAGCACTCAGACTGGGTCCTGCTGGGGCCACAGGGCAGCAAACCCCGCCGTTCCCGACAGGCCCACAGACCATGCATTTGGCAACACCTGTGTTTCGTGGGACATCCTATTCCAACATCTTTTCTTTAAACCCCAGATGTAAATATGGAGCACTCAGTTCATGCCGCTCTGTGATCTGTTCTTGTTTTGCCTATACATTTATTCCTCTCTTCCCATAGCCCTCTCGGTCTGTGGGCAATTGCTATAAGATACTTGAGGTCTCCCCTCTCGTT s panTro1.chr6_random 67039638 1499 + 67355074 TATTTTAAAATCTAAACCCCAACACCCAAGTGCtttttttttttttttttttttttttgagacagagtctcgccctgtcgaccaggctggagtataatggcacgatcctggctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcgcacgctgccatgcccagctaatttttgtgttttcagtagagacaggggtttcaccatgttggccaggctggtctcgaactcctgacctcatgatccacctgccttggcctcccaaagtgctgagattacaggtgtgagccaccgcgcAGGACCAAGTGCCtttttttttttttctttttaaagagaccgagtctcactctgccacccaggctggagtgcagtggtagcatcacagctcacttcagcctcgaccttccgagctcaagcgatcctcctgcctcagcctcccaagtagatgggaccaccagcccgaaccaccacccccaactaaCCAAGTGCCATTTTAAAAGCAAGCTAATTTTTGGTGTGCAAATAAATGTGTTGGGCACAACCTATTGCTTAGTCACTTGCTCAGACCCACACTAACATCAGGCCAGCTGGTCAAGTCCCACCCAGCCCTGTAGGTTAAGAACAGTCACACTGGGTGATGCGTCCTTGTCACCGACTGTCACCCTGGTCCATTCCAGATGCTCTCCTGGCCCCAGCTTTCCATCTGCTTCCCCCGTCCTGGCAGGAAGCAGAGCCTGGGCCTGTGAACCCAAGGGGTGGCAGCAGGCACTAGGCCCCTCCCGGAGCAGAGCCCAGGACGTGGCAGGTCGGACGGAAAGCAAACCCCTCCTGGGCCCCACGTAGTGCTCACCCAGCTGGAACTCGCAGCCTCTATCCGGGCAAAGGGCTGTATGGGAAAGCCTAGACACCCCGCCCCTGCACAGACACCTCCAGTTTCTCTTAAAACACAGACTCTTGAGCTGTGTTCACTTTCCCAAAGCCTGGAGGTCTCCAGGGAAGCAGAGGCCCCACCCACTTTCCCCCACCCTCCGCCTGGGACCCCCTCACCGCCCCCACCCAACCCAGGACCAGTGCAGGCTCCTCCCCACCAGTGGTAAGTGCCGGAGTGAGGGTGGGAGAGGTGGAGGCAGGGCAAGGTCCAGGAACACAGCCCGCAGACCCATATCCCTGCACTCAGCTCACAGGCGGCCACAACACTCAGACTGGGTCCTGCTGGGGCCACAGGGCAGCAAACCCCGCTGTTCCCGACAGGCCCACAGGCCATGCATTTGGCAACACCTGTGTTTCGTGGGACATCCTATTCCAGCATCTTTTCTTTAAACCTCAGATGTAAATATGGAGCCCTCAGTTCATGACGCTCTGTGATCTGTTCTTGTTTTGCCTATACATTTATTCCTCTCTTCCCATAGCCCTCTCGGTCTGTGGGCAATTGCTATAAGATACTTGAGGTATCCCCTCTCATT a score=16712.0 s hg17.chr7_random 502356 104 + 778964 TGTATGTTTTCTCTTAAAACATAGAATCTTAAGCTATGTGCATTTAACCAAAAAATGGTATCCTGCTGCAGATTTCATGCTGTTTCTTCTTTTTCTTCAAGGAG s panTro1.chr6_random 67041137 104 + 67355074 TGTATGTTTTCTCTTAAAACATAGAATCTTAAGCTATGTGCATTTAACCAAAAAATGGTATCCTGCTGCAGATTTCATGCTGTTTCTTCTTTTTCTTCAAGGAG s rn3.chr1 47748936 104 - 268121971 TGTACATTTCCCCCTCAGGTGTTGTATTTAAAAAGAAGTATATTTAATTTAAAAATGTAATACAGTTGAATATATCATTTTTTTTCTTTTCTTTTTTTAAGGAG a score=217102.0 s hg17.chr7_random 502460 2324 + 778964 TCCACATACTCTAGATCTACCCACGTCACCACATTGCCTGACACGTTGGGGCTGCGGCTTTGAACTGCCGTTTTgtttgcatttccatttccctgatctctaagctctgagctgctcttcaagggcttctcctctggttgtgtttcctcttctgtaaacttcctgttcatatcctgtgcccatcttgatagaagggttggtaccttctttcctgctgatttgcagaaattccttgtgtgttttagataccggttgcttgtcgggtttagatattgcaactatcttcttacacgcagtcacctgttaactttttcatgatgtccttaattaggtagacatctttcatctgatgtaacctcttttttgctttatggtttgtgctttgtgggttttgtttaagaaagtgtttccccacaaccaagtaatgaaatactctccGACATGTCTGCCTGGGCTGCCATCACAGAGCACCACAGACTGGCAGCAAGACCCTGTCTTGAAAaaagtgaggtcctactggagtagggttggccctaactcaatatgattggtgtccttataaaaagaggagacttggacacacacagggaaaacacagtgtccacgcagagcgaagagtcggacgaaagcacagcagggaggcaacacggcacctacaagccaaggagaggccaggccagatccccacacacagccctcagggggaaccagccctgcccacatcttgagcttggacttctggcctccagaagcatgagacgcttgatcactgttgttaaggccaagtttgtccttctgttatggcagccctagaaactaacacagtgttttacgcacagttgctcatttaattctcacaacaaccttgtggcatatatgatcatcactccccttatcctcacatacaagtgggagcaggacagaagcacagagaggttaaggaacctgcccaaggtcacacagctaaggaatggtggtgctgggattcaaaaccgggtgatctggctccagagtccttgtcttaaccactgcactaaactACCTCTTGCATCTATTAAATATGGAGCTCCCATGTGTGCCTGCACCTCCTCTCAGCTCTCGGCCCCACGCCATTGTTCTGCCGTCCCTTCCTGCAGGGCACCTGGCTCCATTTATGATCAAGGCCTCCTGCTGAGCCTCAGCTCTTGGTAGGAGAAGTCCCTCTTCTTTGTGCTTCTGTTTCAAAGATGACTTAGTTATTTGCAAATTTTTATTCTTTCCTTTCCTTTTTCTTTCTGTTGTtttgttttttgttttgttgtttgttttttagagacaaggtctcactctgtcacccaggctagagtgcagtggtgcgatcatagctcactgtagcctcgaactcctgggctcaagtgatcctcctgcctcagcctcctgagtagctgggcctacaggcacatgccatcatacccagctacttttttttttttttttttttagagatggggtttctctgtgttgcccaggctggtctcaaactcctgggctcaaacaatcctcccacctcagcctcccaaagtgctgggattacaggcataagccaccgcacccagctCATTCACATTTCCGAATGTGTTTACTGCCTCACAATATTCCAGCTGCAatttgaagtggagctgctttgaaggtagagattaatgtgagggagaaatgacatcatcacgttgagtcattccacccaagaatacagaccgcctctccctattcagatcgtgttttatgtccttATAGAGGTTTAAAACTTCCTCCCTAGAGTCTTCTGTAATCTGTTGTCAAGCACATTCCACTTCTCAGTGGCTGTTGCCCTCATGAATGGCATCCTTTCAAATTCTATTCTCCAGTTACTCCTCACCTGTGTCTCTTTTCTCATTCCCTGCACCCACCCAGCCCCTTGGGCTCTTTTTTTTCTCTCTTTCTTTCTGTTGAGACAGATTTAATATCTTCATTGTGATGGGAAGGAATCCGTATTTTTAAATTTTCTTTAAATTGACAAAGAAAAATTGTGTATATTTATTTATGGATTCCTTGGGCTTCTTAATGAtgatttttgtaagttgagcttgcaccaaccctgctgaacactcataagaatgtaagagttgttctgtgtattctatgctggtttccatagacatgatcaaattcatcttctctcttcccttccaattaggactcctcttatttttctttctttatagcattgccgggacctcccaagcacagttaaaacatgaaagccatcagagcctcattgtggtccctcccttaaagagcatgtagcc s panTro1.chr6_random 67041241 2319 + 67355074 TCCACATACTCTAGATCTACCCACGTCACCACATTGCCTGACACGTTGGGGCTGCAGCTTTGAACTGCCGTTTTgtttgcatttccatttccctgatctctaagctctgagctgctcttcaagggcttctcctctggttgtgtttcctcttctgtaaacttcctgttcatatcctgtgcccatcttgatagaagggttggtaccttctttcctgctgatttgcagaaattccttgtgtgttttagataccggttgcttgtcgggtttagatattgcaactatcttcttacacgcagtcacctgttaactttttcatgatgtccttaattaggtagacatctttcatctgatgtaacctcttttttgctttatggtttgtgctttgtgggttttgtttaagaaagtgtttccccacaaccaagtaatgaaatactctccGACATGTCTGCCTGGGCTGCCATCACAGAGCACCACAGACTGGCAGCAAGACCCTGTCTTGAAAaaagtgagctcctactggagtagggttggccctaactcaatatgattggtgtccttataaaaagaggagacttggacacacacagggaaaacacagtgtccacgcagagcgaagagtcggacgaaagcacagcaggaaggcaacacggcacctacaagccaaggagaggccaggccagatccccacacacagccctcagggggaaccagccctgcccacatcttgagcttggacttctggcctccagaagcatgagacgcttgatcactgttgttaaggccaagtttgtccttctgttatggcagccctagaaactaacacagtgttttacgcacagttgctcatttaattctcacaacaaccttgtggcatatgtgatcatcactccccttatcctcacatacaagtgggagcaggacagaagcacagagaggttaaggaacctgcccaaggtcacacagctaaggaatggtggtgctgggattcaaaaccaggtgatctggctccagagtccttgtcttaaccactgcactaaactACCTCTTGCATCTATTAAATATGGAGCTCCCATGTGTGCCTGCACCTCCTCTCAGCTCTCAGCCCCACGACATTGTTCTGCCGTCCCTTCCTGCAGGGCACCTGGCTCCATTTATGATCAAGGCCTCCTGCTGAGCCTCAGCTCTTGGTAGGAGAAGTCCCTCTTCTTTGTGCTTCTGTTTCAAAGATGACTTAGTTATTTGCAAATTTTTATTCTTTCCTTTCCTTTTTCTTTTTGTTGTtttgttttttgttttgttgtttgttttttagagacaaggtctcactctgtcacccaggctagagtgcagtggtgcgatcatagctcactgtagcctcgaattcctgggctcaagtgatcctcctgcctcagcctcctgagtagctgggcctacaggcacatgccatcatatccagctacttttttttttttttt-----agagatggggtttctctgtgttgcccaggctggtctcaaactcctgggctcaaacaatcctcccacctcagcctcccaaagtgctgggattacaggcataagccaccgcacccagctCATTCACATTTCCGAATGTGTTTACTGCCTCACAATATTCCAGCTGCAatttgaagtggagctgctttgaaggtagagattaatgtgagggagaaatgacatcatcatgttgagtcattccacccaagaatacagaccgcctctccctattcagatcgtgttttatgtccttATAGAGGTTTAAAACTTTCTCCCTAGAGTCTTCTGTAATCTGTTGTCAAGCACATTCCACTTCTCAGTGGCTGTTGCCCTCATGAATGGCATCCTTTCAAATTCTGTTCTCCAGTTACTCCTCACCTGTGTCTCTTTTCTCATTCCCTGCACCCACCCAGCCCCTTGGGCTCTTTTTTTTCTCTCTTTCTTTCTGCTGAGACAGATTTAATATCTTCATTGTGATGGGAAGGAATCCATATTTTTAAATTTTCTTTAAATTGACAAAGAAAAATTGTGTATATTTATTTATGGATCCCTTGGGCTTCTTAATGAtgatttttgtaagttgagcttgcaccaaccctgctgaacactcataagaatgtaagagttgttctgtgtattctatgctggtttccatagacatgatcaaattgatcttctctcttcccttccaattatgactcctcttatttttctttctttatagcattgccgggacctcccaagcacagttaaaccatgaaagccatcagagcctcattgtggtccctcccttaaagagcatgtagcc a score=34855.0 s hg17.chr7_random 504784 224 + 778964 aaagattctc---cattagcatgtttgctctgtgttgggtatgtatgacctttaccaagttaagaagtgaccctattcttagtttgctaagaatttatgcaatagttgttgagctttgtcaaaaccttttccaacacctatgtgacatgtcacat--gctctttctctacaatctactaatatggtgatttacatggatagagtattctgaggttgaaccatccttgaa s panTro1.chr6_random 67043560 224 + 67355074 aaagattctc---cattagcatgtttgctctgtgttgggtatgtatgacctttaccaagttaagaagtggccctattcttagtttgccaagaatttatgcaatagttgttgagctttgtcaaaaccttttccaacacctatgtgacatgtcacat--gccctttctctacaatctactaacatggtgatttacatggatagagtattctgaggttgaaccatccttgaa s canFam1.chrUn 1828045 215 + 91062872 AAACATTCCCTAACACCAGGATGTTTGCTCAGTGACAGGTGCATGCGACCTTTACTAAATTACATTTCCCTTCTAGGCTTAGTTTGGTAAGAATTTTTATAGTAGTTGCTGATTGTTATCAGGCTCTTTTTCAACATGTACATGACATACCATACCGATGTTTTTCCTGTGGTCTATTAATGTGG--------------ACAGCATTCTGAGCTGGAGCTGTCCTTGAA a score=194754.0 s hg17.chr7_random 505008 1464 + 778964 ttctggatcatctccacctgatcacagt----------------------------------------------------------------ACAGTAcatacaatgatcta-------------------------------------------------------------gcagcttcctcttgttttctattttctgtagcaatttgagaagtaagaatagacagtttgctgatgtttgaaagaactcaaccagtgaaaccatcagaaagaaccctttgggaggaaaggtctttggttaccatttcaacttacttaatgcttctagatctcttcaggttttctatttattcatgtgccaatgttgatggTattttcaaaatcatctcccaatatttaaaaatttacaaaatt-cataaaatccaaattgttggctttcctttgaaaaaagaaaataaaaagaaaagtctgacaacacagggaccttgtactcccaaagcaagaattcagctcacccccactttggaaggagcatgaccatctccaatctgccacaattcccaAGGACTCCACGTTTTCCACTTAATTCCTGAACCCCCAGGATCCCGAGTTTGCAACCCTTCCCTAAGGGGCTCACTATTGAGCAGTGGTGACAGATGCTTGTGTGGGGTGATGTCACAGCAGGTGGGGTCATCCCCATGACAGATGCTTCCT-----GGCCATCACCTCATCATGTGTGGTACAAGTCCCAACCTTGCCTGGAGGGACCCAGGGGACTGAGTTTCTGAAGAGTTAAGCcatctgtaaaatgggcaca--gtaacactctcagcctctaaagcagcagggaggactca---gtgatcatgaggcttgtgaagcactcagcagaatAAGGGGCTCCCACGGTCAGCAGCCGCTGCCATA---GTGTCTGCTGGTTCCAAACCCCATGCA---------------GCCGCTCCCCCAGTGCTGCTAGAAGGGTCACACATGTCCCAGAATCCCCCAGGAGTGATGCAAACGGAGCGGCCCATGCCCCGATCTCAGCCAGTCTCTTCA-CCACTCTGGCTTTTTTATTCCTTTTTGTTGGCTTACATTGCTAATATATTGTGGAACTGCAGCCAGAGGTGGCCTGACAGGTAAACACCTCCCCGCCCTCACCCATGCAAAGAAACCTG-CTGAAGCAAACAGGTTCAGCCAGTTCTCAGAGCCGAGGCCA-CCTAAGGGGGACAA--CAGAAAGGATGGGCACCCA-CAGCCCCTCAAAGCTGCACCTCAGACCCGAGCACCAGG-TGCCTGCCAAGGCTGGGCATGCATTCAGAAGAGCAGCGAGGTGAGGGGTGGCAGCAAGGACCCCCGCGCCACACAGGGCCTCCCGCTCACTCCTCCCGCTCCAACAATC-TGCATTTCTGTATGTTAGAAATGTCTGCCTGAGGCTAAAAGAAATAAAGAATTTTTGTGACTTTTAAACAAAAGCATCATGACATTGACCTGGGAGAACATGAATGTGCTAGGATCGTATCCAGTAATAAAGAAGGCAAACTGAGTTATTAGCACTTCCAACATGTCTGATCTTTAGTTTTTTTCAACTCTCTATTTTG s panTro1.chr6_random 67043784 1464 + 67355074 ttctggataatctccacctgatcacagt----------------------------------------------------------------ACAGTAcatacaatgatcta-------------------------------------------------------------gcagcttcctcttgttttctattttctgtagcaatttgagaagtaagaatagacagtttgctgatgtttgaaagaactcaaccagtgaaaccatcagaaagaaccctttgggaggaaaggtctttggttaccatttcaacttacttaatgcttctagatctcttcaggttttctatttattcatgtgccaatgttgatggTattttcaaaatcatctcccaacatttaaaaatttacaaaatt-cataaaatccaaattgttggctttcctttgaaaaaagaaaataaaaagaaaagtctgacaacacagggaccttgtactcccaaagcaagaattcagctcacccccactttggaaggagcatgaccatctccaatctgccacaattcccaAGGACTCCACGTTTTCCACTTAATTCCTGAACCCCCAGGATCCCGAGTTTGCAACCCTTCCCTAAGGGGCTCACTATTGAGCAGCGGTGACAGATGCTTGTGTGGGGTGATGTCACAGCAGGTGGGGTCATCCCCATGACAGATGCTTCCT-----GGCCATCACCTCATCATGTCTGGTACAAGTCCCAACCTTGCCTGGAGGGACCCAGGGGACTGAGTTTCTGAAGAGTTAAGCcatctgtaaaatgggcaca--gtaacactctcagcctctaaagcagcggggagaactca---gtgatcatgaggcttgtgaagcactcagcagaatAAGGGGCTCCCACGGTCAGCAGCCGCTGCCATA---GTCTCTGCTGGTTCCAAACCCCGTGCA---------------GCCGCTCCCCCAGTGCTGCTAGAAAGGTCACACATTCTCCAGAATCCCCCAGGAGTGATGCAAATGGAGCGGCCCATGCCCCGATCTCAGCCAGTCTCTTCA-CCACTCTGGCTTTTTTATTCCTTTTTGTTGGCTTACATTGCTAATATATTGTGGAACTGCAGCCAGAGGTGGCCTGACAGGTAAACACCTCCCTGCCCTCACTCATGCAAAGAAACCTGGCTGAAGCAAACAGGTTCAGCCAGTTCTCAGAGCCGAGGCCA-CCTAAGGGGGACAA--CAGAAAG-ATGGGCACCCA-CAGCCCCTCAAAGCTGCACCTCAGACCCGAGCACCAGG-TGCCTGCCAAGGCTGGGCAGGCATTCAGAAGAGCAGCGAGGTGAGGGGTGGCAGCAAGGACCCCCGCGCCACACAAGGCCTCCCGCTCACTCCTCCCGCTCCAACAATC-TGCATTTCTGTATGTTAGAAATGTCTGCCTGAGGCTAAAAGAAATAAAGAATTTTTGTGACTTTTAAACAAAAGCATCATGACATTGACCTGGGAGAACATGAATGTGCTAGGATCGTATCCTGTAATAAAGAAGGCAAACTGAGTTATTAGCACTTCCAACATGTCTGATCTTTAGTTTTTTTCAACTCTCTATTTTG s canFam1.chrUn 1828432 1462 + 91062872 TTTAAAAGAAACCCTACTTAGTCTCAATGGGTAGTTTTCAAAAGTCAAGTTGAATTTGGTTGGCTATTTACAATTTTTGCATCTATATTCACAGAATACATACTATGCCTCACAGCTTTTACATGGCTTCTTGTTTGTTTCCTTGTGTCACCCGTATCATGCTCGGAAGCTGGGCAGCTCCTCCCTGCTCTCTGTCTTCTGGAGCCACTTGTGATGGGAGAACACACAGTGTGCTGACGCTGGACGGGGCCTGCCC--CCAAGCTGTCATGACCTGGCTTCTCAGAGG-AAGGCCTTCAGCTGCTGTTTA-----ACTTTGAGTTTATTGATTGCTCCACATTTTCTATTTCTTCACATGCCAACATGGACACCattttcaaagtta----aaaatctttaaaaattgacagagttataaaaaatccaaatttttagattttctttaaaaga-------taaaatgaagctctagcaacatggggcctgcattctcacaaagcaagaaattagcccactcccaccctggtcagagcac-atgctctccagtctgccacaagcccc-aGAAGTGCATG----------GATTCCTG-ACCCTCAGTG---CAGGTGTGTAAGCCTGCCT--GTGAGCTCACTGTC---TGGGGGTGGCAGCTGCACAAGTGGGACTTCATCACGAGAGTGCCAGGCAT-CCTGTGACAACTGCTTCTCTGAGGGACC----------------TGCTGCCAGTGCTAAACTTACCTGGACAGACCcaagagactgaatctccaaggacttaacccatctgtaacatgggcatagggtagcacacccaccctcatag--agctctgagagcctaaccgagat-atggattttgtgaagcatttagcaaaat---gagcactcacagtcaggagct----tcataactgTTTCTGCCAGCTCCAGATCACATGCACACAGCAGTGGGGAGCCCCTTTTCCCAGCCCTGCTAAGAGGCTCACCCACCTCACAGGATCTCCTGGGAATGAAGACATTGTA---------CCCCTGGTCTTGGCCTGTCTCATGATCCAGTATGACTTCTGTACTCCTTTTTAATGGCTTACATTTCTGATATGCT-TGGAGCTGCAGGCAGAGGTGGCCTGA-------------------CCTCAACCTTGCCAAGCAGCCTG-CAGAAGCAAACAGGCAGGGCCAGTTCTGAGAG-TGAGGCCACCCTGCGTGGGACAGGCCAGGGAG-GAGGGCGCCCAGCAACCAGTCAGATCTGCATCT-GGCCCCAAGCACCCGACCTCCTACCAGCGCTGGG-------------ATGCAGCGGGGCG-GAAGTGACA------------GCGTCCCAGTGGACTCTCCCCT---GTCGCCAGTTCCAGTAACCTTGCATTCCTGCATCTTAGAAACACTCCTCCGGGGTGA--------AGGGCATTCCTGTGAC-TTCAAGCAAAAGCACCCTGACACTGACC------------------ACAGGACCGCCTCCAGTAATAAGAAAAGCAAACTGCG---TCAGTGCTTT---CATTTCTG-TCATTATTTCTTGAAAAGTCT-TATTTTG a score=91.0 s hg17.chr7_random 506472 1 + 778964 A s canFam1.chrUn 1829894 1 + 91062872 A a score=273.0 s hg17.chr7_random 506472 1 + 778964 A s panTro1.chr6_random 67045248 1 + 67355074 A s mm5.chr5 136478718 1 + 149219885 A a score=167696.0 s hg17.chr7_random 506473 650 + 778964 AAATCTTTGAA-CCTTCCTAGGGATGGAAGGG---GGATGTCAGAGTCAGGACACGGGTTGTTAT-TCCCCCTCCCATGATGTC-AAAGAGCAGAACA-CACAGAGGCACATATGCACCAACAGTAGGTCTGCA-GAGAATGTGCATATGTGTATTGACAAGGAGCAGACGGGAATGATGAGTGAAGAAAACAGAACATTTACCAAAAAGGACCCCGCTGAAGGCAGAACACTTGTTCCAGCGCATACTAATATGTTTTTCTGACTTCTTATGTTTTTCAACATGACGCTATCCAGGGGGAAAGAGTG-----GCCTGCT--CA-GTCTGTCCTCCTTTAGAAGTGGTTCTGAAAGACCTAGACATGCTGCCCTCACTGGGGAAGAACCTCTCTCCATTGCGGATTTAAACCTTAGGTCAATGTTATTTAAGGAAAGGAAGTGGCCTAAACCCTTGGGCAGACCCTGGGTGCT---GGCATCACGGTCCTATCTCTTCT---------GTCCCAGCCCAAGACCCAGGGTTCCCATCTGCTGGGATCCCAGCGCCCCAGACACAGCATCCT--GGCTTGTGTTTAGCCTCTTCCACTGTTTAGGTGAAGGCTTGTTCCGTGACTCTGTTGACTACAAGTTTCCAAAAAATTCTCTCTAAATAGCAATAACTCAGTCCTGG s panTro1.chr6_random 67045249 650 + 67355074 AAATCTTTGAA-CCTTCCTAGGGATGGAAGGG---GGATGTCAGAGTCAGGACACGGGTTGTTAT-TCCCCCTCCCATGATGTC-AAAGAGCAGAACA-CACAGAGGCACATATGCACCAACAGTAGGTCTGCA-GAGAATGTGCATATGTGTATTGACAAGGAGCAGACGGGAATGATGAGTGAAGAAAACAGAACATTTACCAAAAAGGACCCCGCTGAAGGCAGAACACTTGTTCCAGCGCATACTAATATGTTTTTCTGACTTCTTACGTTTTTCAACATGACGCCATCCAGGGGGAAAGAGTG-----GCCTGCT--CA-GTCTGTCCTCCTTTAGAAGTGGTTCTGAAAGACCTAGACATGCTGCCCTCGCTGCGGAAGAACCTCTCTCCATTGCTGATTTAAACCTTAGGTCAATGTTATTTAAGGAAAGGAAGTGGCCTAAACCCTTGGGCAGACCCTGGGTGCT---GGCATCACGGTCCTATCTCTTCT---------GTCCCAGCCCAAGACCCAGGGTTCCCATCTGCTGGGATCCCAGCGCCCCAGACACAGCATCCT--GGCTTGTGTTTAGCCTCTTCCACTGTTTAGGTGAAGGCTTGTTCTGTGTCTCTGTTGACTACAAGTTTCCAAAAAATTCTCTCTAAATAGCAATAACTCAGTCCTGG s mm5.chr5 136478719 541 + 149219885 AAAAGTTTGAA-CCTTGGTTGGGGCGGG-----------GTCAGAGTGAAGGCATGA--TCTCAC-TCCCTGGCTC---AAGCC-AGTGAATAGAACC-TA-AGCAGCAC---TATACC------TGTCTTGCA-GAAAGTG---------GAATTCAC-AGAAACAGACAGGAAATGTGAGAGATGGAGACAGGCCATTTAC---AAGCGCTCCTACTATGTGCAGAAAATTCGTTC------------ACATATTCTCA------CTAATGTTTCTGATGGTGAGGCTG--AAGAGGGCGAGAGGG-----GGCAGCTAGAA-GTCTCATTTCC-TTGGCAACCACTCTGAAAGACCCAAACA---------------AGAAGGA-CTCTCTACTATTCTGATCTGCACTTTCAGTGAATACTATGTA--GACAGGAAGC-ACCCAGACTGCTGGACA---CCTTGGCGTC---AGT----CTGTCTTACACTGGCC---------ATCCCAGCCCAAG-----TGGCCTTCAGCTGCTGG----CCAGGGCGACAGATGTGGTGTCCC--AGCTTGAATTTAGGTTCTCTCACTGTTTAGGTGGGAGCTCACTCT-------------------AGTTCCAAATATTTCTGTGGAGACAGCAATAAGTCAGCCCTGG s rn3.chr12 30552009 540 - 46649226 AAATGTTTGAACCCTTGGTTGGGGTGGG-----------GTCAGAGTGAAGGCATGA--GCTCAC-TCCCTGACTC---TGGTC-AGTGAACAGAACCTCAAAGCAGCAC---CATGCC-------TGTCTGCA-GAAAGT----------GAATTGAC-ACAAACAGACAGGAATTATGAGCAATGGAAACAGACCGTCTAC---AAAAGCTCCTACTATGTGCAGAAAATTTGTTC------------ACGTATTCTCA------CTGATGTTTCTGGTGGTGAGGCTG--AAGAAGGGGAAGGGA-----GGCAGCT--AATGTCTCATTTCC-TTGGCAAGCGCCCTGAAAGACCCAAACA----------------GAAGGA-CTCTCTGCTATTCTGATCTGCACTTTCAGTCAATGCTATGTA--GACAGGAAGC-ACGCAGACTCCCAGGCC---CCTTGGTGTC---GGT----CTGTCTTACACTGGCC---------ATCCCAGCCCAAG-----TGGCCTTCTGCTGCTGG----TCAGAGCAAAAGATGTGATGTCCC--GGCTTGTGTTTAGGATCTCTCACTGTTTAGGTGGGAGCTCGTTGT-------------------ATTTTCAAATATTTCTGTGGAGGCAGTAATAACTCGGCCCTGG s canFam1.chrUn 1829895 636 + 91062872 AAAATGTCAAA-CTTTCAGAAGCATGGAGGGACACGGATGTCAGAG-CAGGATACA---TATTATATTCCCAGCTGGTGATGTCAAAAGAGCAGAATG-CAGCACAACACACATGCACCAACCACAGGTCTGCACAAAAGCGCACATACGTGTATTGACAAGGACCGGACAGGAGCCATGAGGGATGAGAATAGAACATGAAA--ATAAAGACCATCCAGACCACAGAAAACACGTTCAAGTGCATACTAGTGTGTTTTCCTGACTCC-----------AAAATAATGCCA--TAAATGGGAAAAGTGCAACTGACGGCT---G-GTCTGGCCCCT-TTAGAAATGGTTCTGGAAGACCCAAACGTGCTGCTACAGCCTTGGGAGAATTTCTCTCTCTGGCTGTTTGGACTCACAGGTCAATGTCACCCA-GAGAAAGAAGTGCCCTGGACCTGTGGGCAAAGCTCTGGTGCATTGGGCACCATGGCAACATCCTGTTTGACGGGCCAGTCATAGCCCGAG-----TGACC-----AAGCTGG-------GCACTCCAGACACAGTGGCCCCAAGGTTGTGTTTAGGCTTCTCCACTGTTTGGGTGAAAGCTCACTATGTTTCTCTCTGGACTGCAACTTTCCAAATAATTCTCTGTAAACAGTGATCACTCAGGCATTG a score=1768.0 s hg17.chr7_random 507123 30 + 778964 C------------ATCATGGAAAGCAGAG--CT-CCTGCTCCCGG s panTro1.chr6_random 67045899 30 + 67355074 C------------ATCATGGAAAGCAGAG--CT-CCTGCTCCCAG s mm5.chr5 136479260 43 + 149219885 CTGTTTGTGCACTGTGGTGTGGGGCAAGG--CTGCCTGCTCCCGG s canFam1.chrUn 1830531 33 + 91062872 -----------CCATGGTGAGCGACGAGGTACTACCCACTCCTG- a score=8284.0 s hg17.chr7_random 507153 51 + 778964 CTGGGGTGCCAACAGCACGGTGTTCTCAAATCCCCTGGGACCCTCG-GCCAC s panTro1.chr6_random 67045929 51 + 67355074 CTGGGGTGCCAACAGCACAGTGTTCTCAAATCCCCTGGGACCCTCG-GCCAC s canFam1.chrUn 1830564 52 + 91062872 CTGGGGCACCAGGACCACGATGTTTGCAGACCTTCAGGAGACCTGGTGCCAC a score=50245.0 s hg17.chr7_random 507204 543 + 778964 ACTCTTGACTGTGGGTCTGGTTCCTAACCACAAACATGTGGtaacaacaattctctctctggccaaactttagtcaggttccagaaccttcttctaggcccatctgtacttccttgtaaaataatcctgccaaatcagttcagccagaaccgatcacccaccataatcaatatgtgatcatctttgatatctgatcatcctcagtgtctgatcaggctcctcacacccaccaccccatgggggatgtctggtcaccctggcctctcttcagcaacaatcctgttaggtcagtgaagccagaaccccccagcccctggtgtttcctctcggtcattttccatccactgccacttaggtggaaattctcacgttctcatctcatattcggaggcaagcccaagctccttcctccaccgcaagaccccattgcagtgatccctgtacctagtgcaatggtccagaatgaagtcttccatgccatgctttaacacacgtcactgaataacgttttcttGGCATTGGAGAGAGAAGCGCGTGAATGGC s panTro1.chr6_random 67045980 543 + 67355074 ACTCTTGACTGTGGGTCTGGTTCCTAACCACAAATGTGTGGtaacaacaattctctccttggccaaactttagtcaggttccagaaccttcttctaggcccatctgtacttccttgtaaaataatcctgccaaatcagttcagccagaaccgatcacccaccataatcaatatgtgatcatctttgatatctgatcatcctcagtgtctgatcaggctcctcacacccaccaccccatgggggatgtctggtcaccctggcctctcttcagcaacaatcctgttaggtcagtgtagccagaaccccccagcccctggtgtttcctctcggtcattttccatccactgccacttgggtggaaattctcacgttctcatctcatattcggaggcaagcccaagctcctttctccaccgcaagaccccattgcagtgatccctgtacctagtgcaatggtccagaatgaagtcttccataccaggctttaacacacgtcactgaataacgttttcttGGCATCGGAGAGAGAAGCGCATGAATGGC a score=42645.0 s hg17.chr7_random 507747 308 + 778964 CAGGGTTCAGGGTATGGAATGAACCTATGGAGTCCCAGAAGGGAGGTACAAGCCAAGTGTCCGCTCTACCCTGTGGATCTAGGGAAGGAGGTGGAGGATGGCAAATTCCTTCTGTACATTCTTGGGCTTCCAA-CCAGAATTGCTAGTCCATGCCACTGGCCATGGCGTCCAGCCCTGGATGTTCACAGTATCCCCAGATACCCACGCCAGCCCTGAGCTTCTGAATCAGAATCCACTTTGGATGAAGACCAGCACCTGCAGGTTTAGGTTGGTGACAGCAAACTTTTATCTTAAAAATATGCAT--GCTg s panTro1.chr6_random 67046523 310 + 67355074 CAGGGTTCAGGGTATGGAATGAACCTATGGAGTCCCAGAAGGGAGGTACAAGCCAAGTGTCCGCTCTACCCTGTGGATCTAGGGAAGGAGGTGGAGGATGGCAAATTCCTTCTGTACCTTCTTGGGCTTCCAA-CCAGAATTGCCAGTCCATGCCACTGGCCATGGCGTCCAGCCCTGGATGTTCACAGTATCCCCAGATACCCATGCCAGCCCTGAGCTTCTGAATCAGAATCCACTTTGGATGAAGACCAGCACCTGCAGGTTTAGGTTGGCGACAGCAAACTCTTATCTTAAAACTACGCATTCGCTg s canFam1.chrUn 1830655 265 + 91062872 CAGGACTCTGAGTGGGGAGCG------TGGA-CCCCAGGAGAGAGGCCCCAGTTGAGACTCCACTCTACCCTGTACCGCCAGGGGAAGGCATAGAGG----------------------CCCAGGATCTCCAACCCAGAATCACCAGTGTACACCTCTGG--------------TTTTGATGTTTACCGTGTCCCCAGATGCCCAGGACAACTC-GAGCTGCCAAGTAAGAAGGCACCTTGGATGGGGACCAGTGCCTAAAGGTGTAGGCTGGGGAGGATGAGCTCTTCTATTAAGAATGCACCC--AGTA a score=28004.0 s hg17.chr7_random 508055 315 + 778964 accaagcatggtggctcacacctgtaatctcagcactttgggaggctgaggcaggcggatcacctgaggtcaggagttcgagaccagcctggccaaca-tggggaaa-ccccatctctactaaaaatacaaacattagccaggcttggtgacatgtgcctgtaatcccagctattcaggagactgaggcaggagaatcacttgaatccagaaggtgggggttgcattgagtgagatcgtgccactgcactccagcctgggcaacagagcaagactccatctcaaaaagaaaaaaaaaaaGTGCATGCTCTTTGAATG s panTro1.chr6_random 67046833 316 + 67355074 accaggcatggtggctcacacctgtaatctcagcactttgggaggctgaggcaggcggatcacctgaggtcaggagttcgagaccagcctggccaacattggggaaacccccgtctctactaaaaatacaaaaattagccaggcttggtgacatgtgcctgtaatcccagctactcaggagactgaggcaggagaatcgcttgaatccagaaggtgggggttgcattgagtgagatcgtgccactgcactccagcctgggcaacagagcaagactccatctcaaaaag-aaaaaaaaaaGTGCATGCTCTTTGAATG a score=172585.0 s hg17.chr7_random 508370 1021 + 778964 GGTTTTTCTTTCCCCTAGCATTTCCTCTATAGAAGCAATTTTTAAAATATATAAGATGTGGCTAGCAGGCTGTTTATCACAGAGCTGCTTGTAGCCATGAAGGTTTGAAATATGCAATAGTTGGTGATTGGTTAATTAAGTTACAGAATGGAACACAAGGAGGTATTAAAAAACAGTGATGTGGAGACACATCCACGGAGACTGGATGATGGTCACTATAGGCCTATTAAATTTAAAAATGGGTcataaggcaaaatctgatcaaactgcaaggagaaacagacaaatgcactattatagtttaagactttaacgcccctcagctagttattgacagatccagcaggcagaaaatcagtaatctagtttgaaaaattatacacaggaaataaaaaaagagaat-cagtaagaacatagattaactgaatggcaccatcagttaacaggaaataattgacatttacag-------acttcatcaaacaagagcagactacacattcttctcaagctcacatgaaacatttaccaagagagaaaacattctgggccataaaatatccctgaacaaatgtaaaagaacagaaatcatatagtgcatgctctcacaccggaagtgaattaaactagaagtcagtaacagaaagatagataggaaatcccacaatatttggagattaaataacatacttcta--aataatgcatgggtcaaaaaagaagggtcaagagaagttgaaaaatattttgaacgaaatgaaaatgaaaatagagcttatcataatatgcaggaggtagcaaaagcaacacttagagggaaatctatagcactgaatgcatatatt------aggaaaagatccaaaatcaacaacctaagcttccatcttgggaaa-ctacaacaagaagaggaaattaaatccaaagcaacaaaaagaaaagtaagaataaaaatt--------aagacagaaataaatggaattgaaaataggaaaatactaaagaaaatcgatgcagccaaagcatctctaacttcagaaat s panTro1.chr6_random 67047149 1023 + 67355074 GGTTTTTCTTTCCCCTAGCATTTCCTCTATAGAAGCAATTTTAAAAATATATAAGATGTGGCTAGCAGGCTGTTTATCACAGAGCTGCTTGTAGCCATGAAGGTTTGAAATATGCAATAGTTGGTGATTGGTTAATTAAGTTACAGAATGGAACACAAGGAGGTATTAAAAAACAGTGATGTGGAGACACATCCACGGAGACTGGGTGATGGTCACTATAGGCCTATTAAATTTAAAAATGGGTcataaggcaaaatctgatcaaactgcaaggagaaacagacaaatgcactattatagtttaagactttaacgcccctcagctagttattgacagatccagcaggcagaaaatcagtaatctagtttgaaaaattacacacaggaaataaaaaaagagaatgcagtaagaacatagattaactgaatggcaccatcagttaacaggaaataattgacatttacag-------acttcatcaaacaagagcagactacacattcttctcaagctcacatgaaacatttaccaagagagaaaacattctgggccataaaatatccctgaacaaatgtaaaagaacagaaatcatatagtgcatgctctcacaccggaagtgaattaaactagaagtcagtaacagaaagatagataggaaatcccacaatagttggagattaaataacatacttcta--aataacgcatgggtcaaaaaagaaggctcaagagaagttgaaaaatattttgaacgaaatgaaaatgaaaatagagcttatcataatatgcaggaggtagcaaaagcaacacttagagggaaatctatagcactgaatgcatatatt------aggaaaagatccaaaatcaacaacctaagcttccatcttgggaaatctacaacaagaagaggaaattaaatccaaagcaacaaaaagaaaagtaagaataaaaatt--------aagacagaaataaatggaattgaaaataggaaaatactaaagaaaatcgatgcagccaaagcatctctaacttcagaaat s canFam1.chrUn 1830929 965 + 91062872 AGGTTTCCATTCCCTTCTCATGTTAACCATAGAGATATGTTTACACACATATAAGATGAGGCTACTGGACTGCTTGGGACAGCGCTATTTGTAGTCATGAAAATCTGTAATACCTAACAGTTGGGGACTCGTTAATTAAGTCACACAATGGAATCCAAG-------------ATGGAGGTGCAGAGGCTCATCCATGGAGAAT-AATGGTGTTTACTATAGGTCTACTAAG-TAAAAAGCAGGTTGGAaaactaaacctgatagaattgcaaggacaaatagacaaatctaa-attatagttgaggatttcaacacccgtctatgaattattggtagattca-caggtagaa-----------------------------------------------------agtaagggcatacctgaactgaagagcaccatcacttaactagatgtggttgacatttatagaatgtcaactgcaccaaacaacagtagaacacacattcttctccagtttggatgaaacatttaccaagacagacaacatcctgggccagaaaatacatctgaatacatttaaaaatatataagtcatatagtatctgctctcagacc-acagtgggttaaactagaaatcagtaacaaaaaggtagctcaaaagtcc--caatatttggaggttaagcaacacactctgaataacaacacatgtgtcaaaaaaggtggctcaagagaaattgaaaact-tttacaactaaatgaaaattaaaaagcagctaattaaaattaatgggatgtagcaaaagtagtgcttcaagggaaat-tgtagcactgaatgcatatattttaaaaagggaaatacctaaaatcaataatctaagctcccaccttaggaaa-ctagaa-aagaagagcaaattaaacctaaag-aaagccaagaaaataaataataaaaattaaagcaaaaaagcaaaaatcagtggaacttaaaatcagaaatgaatagagaaaatcaacatagtcaaaggtggtt---ctttgaaaat a score=12004.0 s hg17.chr7_random 509391 169 + 778964 gaaagaagggacatcactacaggtcccatggacaagagacatcactacaggtcccatggacaaggggcataactacaggtcctatggacaaggggcaccgctacaggtcctatggacaaggggcatcactacaggtcccatggacaaggggcatcactacaggtcctat s panTro1.chr6_random 67048172 141 + 67355074 gaaagaagggacatcactacaggtcccatggacaagagacatcactacaggtcccatggacaaggggcataactacaggtcctatggacaaggggcatcgctacaggtcccatggacaaggggcatc----------------------------actacaggtcctat a score=10278.0 s hg17.chr7_random 509560 59 + 778964 ggacaagggacaccactacaggtcctatggacattaaa-----aataaaataatattatgaaaa s panTro1.chr6_random 67048313 59 + 67355074 ggacaagggacaccactacaggtcctatggacattaaa-----aataaaataatattatgaaaa s canFam1.chrUn 1831982 60 + 91062872 ggaca----gcatcactccagagcccatgaatattaaaagatcaataaaagaatactatgaaca a score=28969.0 s hg17.chr7_random 509619 323 + 778964 actctatgagaccaggcacggtggctcatgcctgtaatcccagcattttgggaggccgaggcaggagatcacctgaggtcaggagttcgagcccaacctggccaagatggtgaaaccccatctctagtaaaaaatacacaaaattagctgggcatggtggcaggcacctgtaatcccagctactggggaggctgaggcagaagaatcacttgaacccaggaggcagaggttgcagtgagccgagatcgcgccattgcactccagcctgggtgacaagagcaaaactccatctcaaaaaaaaaaaaaaaaagaaagaaagaaaa s panTro1.chr6_random 67048372 314 + 67355074 actctatgagaccaggcacggtggctcatgcctgtaatcccagcattttgggaggccgaggcaggagatcacctgaggtcagaagttcgagcccaacctggccaagatggtgaaaccccatctctagtaaaaaatacacaaaattagctgggcatggtggcagacacctgtaatcccagctactggggaggctgaggcagaagaatcacttgaacccaggaggcagaggttgcagtgagccgagatcacgccattgcactccagcctgggtgacaagagcaaaactccatctcaaaaaaaaa---------aaagaaagaaaa a score=29001.0 s hg17.chr7_random 509942 167 + 778964 actctatgactacacatttgataactcagataaaatgggccagttccttgaaatacacaatctactaaaattcacacaagaagcaacagacaatctgaacaagcttgtatctattaaagaagttgaatcagtaattattaacctttcaaaacaaaaagcgtcaagcc s panTro1.chr6_random 67048686 167 + 67355074 actctatgactacacatttgataactcagataaaatgggccagttccttgaaatacacaatctactaaaattcacacaagaagcaatagacattctgaacaagcttgtatctattaaagaagttgaatcagtaattattaacctttcaaaacaaaaagcgtcaagcc s canFam1.chrUn 1832042 155 + 91062872 attctatgtccacaaatttgcaaacctggatgaaagggaccaagtttttgaaagacattatgtaccaaaacacatacaagaaa-aatagataatata-----------atctaaggaagaaactaaatcaataattattaactttccaaaacagaaagcagcaggcc a score=31136.0 s hg17.chr7_random 510109 330 + 778964 caggctgggcacagcagctcacacctgtaatcccagcacttttagaggctgaggcaggaagatcacttgaggccaggcatttgagagcaacctgggcaacatagcaatacctcatctctactaaaaattttaaaaaaattaatcaggcctggtggtgcacacctgtagtcccaactacttggaaggatgaggccagagaatcacttgagtccaggagctggcaattgcagtgagctatgattgttccactgcactccagcctggatgacagagacagaccttgtctctcagaaacaaaaaacaaaaataaaaacaaaaaaggactaagca s panTro1.chr6_random 67048853 330 + 67355074 caggctgggcacagcagctcacacctgtaatcccagcacttttagaggctgaggcaggaagatcacttgaggccaggcattcgagagcaacctgggcaacatagcaatacctcatctctactaaaaattttaaaaaaattaatcaggcctggtggtgcacacctgtagtcccaactacttggaaggatgaggccagagaatcacttgagtccaggagctggcaattgcagtgagctatgattgttccactgcactccagcctggatgacagagacagaccttgtctctcagaaacaaaaaataaaaataaaaacaaaaaaggactaagca a score=24990.0 s hg17.chr7_random 510439 134 + 778964 cagatgtgttcactagttaattctaccaaatattt-aggaagaaataataccaattctctacattagctt-cagaaaatagaagcagatgaaacacttcctaaataattctatgaggacagctttaacacgaaaac s panTro1.chr6_random 67049183 134 + 67355074 cagatgtgttcactagttaattctaccaaatattt-aggaagaaataataccaattctctacattagctt-cagaaaatagaagcagatgaaacacttcctaaataattctatgaggacagctttaacacgaaaac s canFam1.chrUn 1832197 136 + 91062872 cagatgggttcactggtaaaatccaacaaatatttaaagaagaaactataccaattctcaacaatctcttccagaaaactgaagtagagaaaacactttctcatgcattctatgaggacagtatcaccccaagacc a score=5354.0 s hg17.chr7_random 510573 43 + 778964 -aaattaatctgatcttggaggaaaa------aaaaaAGGAAAGATAAAG s panTro1.chr6_random 67051774 43 + 67355074 -aaaTTAATCTGATCTTGGAGGGAAA------AAAAAAGGAAAGATAAAG s canFam1.chrUn 1832333 39 + 91062872 aaaacca-----------gagaaaagcattacaaaaaaggaaaattaaag a score=82101.0 s hg17.chr7_random 510616 898 + 778964 TGAACttttttttttttagagacagggtctctgtcacctaagctggattccagtggcatgatcatagctcactgcagccttgacctcctggacacgagcggtcctcccgcctcagcctctcaagtagctgggactacaggtacagcaccatgctcagctaatttttatttatttatttattaagatggagtctcactctatcacccaggctgtgcagtggcgtgatctcggctcactgcaagctccgcctcccgggttcaagcgattctcttgcctcagcctcccgaatagctgggactacaggcacccgccaccacgcccaactactttttgtatttttagtagagacagggtttcaccatgttggccaggatggtctcaatctcttgacctcgtgatccgcccacctcggcctcccaaagtgcagggattacaggcatttttatttatttatttgtagagatggggtctcgtcgcattgcccaggctggtctcaaactcctgggctcaagcaaccatcccgcctcagcctctcaaagtgctgggattccaggcatgagccacagggcctggccCCAAAAGATAACATTTTAATCAGCACTGGCGGAGGGTAGCGGTGGGGGCCGAGGGATCCAGGGTTCCCTAAGAGCTCACAGGGTCCTTCTGAGGACTTCACTCTCACCTggaacttttacaacacccattttacagacgggacactgaggccgagactaactcatgactcccccacgcctgagggtttgcaaagggcagagccaggtgcggacccaggcggtcggacAGCCACGGCCAACGCCACCCGGCACTCTACACGGCTGACCCCCCCAATCCATCAGGACTGCAAGGCCAAATATCACACCGTCCGGGGCACCCCAGT s panTro1.chr6_random 67051817 896 + 67355074 TGAACTCttttttttt-agagacagggtctctgtcacctaagctggattccagcggcatgatcatagttcactgcagccttgaccccctggacacgagcggtcctcccgcctcagcctctcaagtagctgggactacaggtgcagcaccatgctcagctaatttttatttatttattcattaagatggagtctcactctatcacccaggctgtgcagtggcgtgatctcagctcactgcaacctccgcctcccgggttcaagcgattctcttgcctcagcctcccgaatagctgggactacaggcacccgccaccacgcccaactaatttttgtatttttagtagagacagggtttcaccatgttggccaggatggtctcgatctcttgacctcgtgatccgcccacctaggcctcccaaagtgcagggattacaggcatttttatttatttatttgtagagatggggtctcgtcgcattgcccaggctggtctcaaactcctgggctcaagcaaccatcccgcctcagcctctcaaagtgctgggattccaggcatgagccacagggcctggccCCAAAAGATAA-ATTTTAATCAGCACTGGCAGAGGGTAGCGGTGGGGGCCGAGGGATCCAGGGTTCCCTAAGAGCTCACAGGGTCCTTCTGAGGACTTCACTCTCACCTGGAATTTTTACAACACCCATTTTACAGACGGGATACTGAGGCCGAGACTAACTCATGACTCCCCCACGCCTGAGGGTGTGCAAAGGACAGAGCCAGGTGCGGACCCAGGCGGTCGGACAGCCACGGCCAACGCCACCTGGCACTCTACATGGCTGACCCCCCCAGTCCATCAGGAGTGCAAGGCCAAATATCACACCGTCCGGGGCACCCCAGT a score=57391.0 s hg17.chr7_random 511514 509 + 778964 ACTGAGCTTGACAGCAGAGGGCACTTCCAATCGTCCCTTCCTAAGGAGGGCACCAACACCCCCCAGGGTG-GGCAGGGGCTCGGGCGCTCTCC--ATCCAGAGCCC---CCCGCCCAGCTCACGCCCGCCCTCCCCGGG---CACTGGGGGAGGAGGTGAGCACCCGCCACTCAGGCTCAGGC---CTGGAAGATCCAG--GCCACGACTGCCAGCGCTCA-ACTCCACTCGGCCCTCACTGGTattttccgagtgcccgctatgtacaggcaggtctgtgctgggcgccaggttgccgggaaatggggcacacacagcccctgtcTCATAAAGGCACCAGCAAAACAGGGGTGAACATCGAATGGGTGGGGCCCTT---CTGACTGTCACTCACGGAACAAACACAG-----------GCCGAG--------------GCCTCATCACAGGGGGACAGCGGTGGGGGGAGTGGGACTGAAGGCCCCCCGAACTCATCTCCC--CAAAGACCATGCGAAAGGGACCTGTACTGCCTCATAACCAGCCATCCACG s panTro1.chr6_random 67052713 512 + 67355074 ACTGAGCTTGACAGCAGAGGGCACTTCCAATCATCCCTTCCTAAGGAGGGCACCAACACCCCCCAGGGTG-AGCAGGGGCTTGGGCGGTCTCC--ATCCAGAGCCC---CCCGCCCAGCTCACGCCCGCCCTCCCCGGG---CACTGGGGGAGGAGGTGAGCACCCGCCACTCAGGCTCAGGCAGCCTGGAAGATCCAG--GCCACGACCGCCAGCGCTCA-ACTCCACTCGGCCCTCGCCGGTattttccgagtgcccgctatgtacaggcaggtctgtgctgggcgccaggttgccaggaaacggggcacacacagcccccgtcTCATAAAGGCACCGGCAAAACAGGGGTGAACACCGAATGGGTGGGGCCCTT---CTGACTGTCACTCACGGAACAAACACAG-----------GCCGAG--------------GCCTCATCACGGGGGGACAGCGGTGGGGGGAGTGGGACTGAAGGCCCCCCGAACTCATCTCCC--CAAAGACCATGCAAAAGGGACCTGTACTGCCTCATAACCAGCCATCCATG s canFam1.chrUn 1833739 475 + 91062872 ACCTGGCTCCACCACAGAGGATACTTTCAGTTGCCTCTCCT--AGGAGGGCACCAGCAATCCTCAGGGTGTAGTGGAGGCTCCAGGGGCCACTGGACCAAGAGCTCCATCATCCCTGGCTCCCATCCA--CTCACTGGGCACCACTGGGCAAGGA--TGAG---CTGCCAC---------------GTGGAGGGTCAAGCATCCACCATCACTTGGGGTCACACTCCACTCTAACTCAGC---------------------------------------TACTGGGAGACCA-----CGGAGAAGAAAGTACATGCAGTGCCTGCCTTG-AGAGGTACATGCGAAACA-GGGTGAACACCAAACAGGTGGGGCCTTCCAGCTGTCATTCATTCATTCAACAAACACAAGGAGGACTAATGCTGGGTCAGCCCCCTTCCTGCCTCAGCCCATGGCAAGAGCACAGGTAAGA---------AAGACAACCCCTCCTTGCCACCTGGAAAAGACTGTATGAGAGGCAGCAATGTCCCTGTGTGGACAGCCATCAGCA a score=62997.0 s hg17.chr7_random 512023 965 + 778964 GCCACGCGGCTTCCT-----------GTGCTCAGCCACATCAGGCACCCCTGGGGCAGCAAACAGGTTTTGC----TATTTGCTCAACCAGACTCAGCGATGGGCTCTGCGGGCACCGGATCCGCCTCTGCATCCCA-----CAGGCTG-GACCCAGCCTAGAGCTGGAAACCTCATCAGAACCTCTCTGTGCCGAGCA-------AGTCAAAATCGGGGACGTGGAGCCAAGGCGAAG------GCGGGC-ACGAGGCGGGAGCCGCCAACAGCCAAGGCATGCTTAGGTCAGCAGAGGGCAGGCGGGGTCCCCTCCAGAGGCC--TCTCTCCAGACTGGGATGCAGGATCTTTCTTCTCCAAGGATTTCATTCCTGGAGGAAGAAAAGAGCCCCAGCTGTCTGCCATCAAACCGGGTTGCC-----------------GGGCTGGAGCT------CCTCCCAGGCCCGTGTGAGGAAGAGCAAAGGCCGGCAGGGGCTCGATGGGACCAGTCGCTCGCTCAGGCCCAGGAAAACCACACAGCTG-GGGGCTGTC--AGGATTGGACCAGGGTCAGG-----------------CCGGCCAGGCGATGGC--GGGAAAAGCAGGCCC--ACTCTG---CAGACCTCAATGTCTCAGGTGCACTGCAGGGCAACCCCGCCTACCCCGGGTAGAGTTGGCAAAGC-CCACGGCCTTGTCCATTTCACCCCCCTGACCA---------TCTCCCTCCCTCGCCTTTTCCAAGAAACC-----CTCTGAAATTCCTCGCTCACCCCCAAGTCAGGCTCAAGGACCCCCCAAGTC-----------AGGCTCAAGGACCCCTCAGGGTTCGTCGGGGACGGGG---TGGAGG--TGCCTGC--TCTGCAGCCCACGGCGGGCACTCGTGTTCTGACGCCAAGGTGCTTGCAACGTCCTGTGAG-CCCGTGCCACTCCGC-----CACCGCGGG----------------------ACGCCA-----------TTGCTACACCACCTGTGTGTCGG-ACATTACAGCCGATGGTGACAGAGCCCGCTCCGTGCAGAAGATGAGAGGCCCTGGA------GACATTCCCAAGCCTGG s panTro1.chr6_random 67053225 963 + 67355074 GCCACGCGGCTTCCT-----------GTGCTCAGCCACA-CAGGCACCCCTGGGGCAGCAAACAGGTTTCGC----TATTTGCTCAACCAGACTCAGCGATGGGCTCTGCGGGCGCCGGATCCGCCTCTGCATCCCA-----CAGGCTG-GACCCAGCCCAGAGCTGGAAACCTCATCAGAACTTCTCTGTGCCGAGCA-------AGTCAAAATCGGGGACGTGGAGCCAAGGCGAAG------GCGGGT-GCGAGGCGGGAGCCGCCAACAGCCAAGGCATGCTCAGGTCAGCAGAGGGCAGGCGGGGTCCCCTCCAGAGGTC--TCTCTCCAGACTGGGATGCAGGATCTTTCTTCTCCAAGGATTTCATTCCTGGAGGAAGAAAAGAGCCCCAGCTGTCTGCCATCAAACCGGGTTGCC-----------------GGGCTGGAGCT------CCTCCCAGGCCCGTGTGAGGAAGAGCAAAGGCCGGCAGGGGCTCGATGGGACCAGTCGCTCGCTCAGGCCCAGGAAAACCACAGAGCTG-GGGGCTGTC--AGGATTGGACCTGGGTCAGG-----------------CCGGCCAGGCGATGGC--GGGAAAAGCAGGCCC--ACTCTG---CAGACCTCAATGTCTCAGGTGCACAGCAGGGCAACCCCGCCTATCCCGGGTAGAGTTGGCAAAGC-CCACGGCCTTGTCCATTTCACCCCCC-GACCA---------TCTCCCTCCCTCGCCTTTTCCAAGAAACC-----CTCTGAAATTCCTCGCCCACCCCCAAGTCAGGCTCAAGGACCCCCCAAGTC-----------AGGCTCAAGGACCCCTCAGGGTTCGTCGGGGACGGGG---TGGAGG--TGCCTGC--TCTGCAGCCCACGGCGGGCACTCGTGTTCTGACGCCAAGGTGCTTGCAACGTCCTGTGAG-CCCATGCCACTCCGC-----CACCGCGGG----------------------ATGCCA-----------TCGCTACACCACCTGTGTGTCGG-ACGTTACAGCCGATGGTGACAGAGCCCGCTCCGTGCAGATGATGAGAGGCCCTGGA------GACATTCCCAAGCCTGG s mm5.chr5 136481821 918 + 149219885 GCCACATGGCATCTT-----------G-ACTCAG------AAAG--CCCCAGAAGCAGTATCTGGACTCTATCTAACATTTGGTCCACCAGAGATGGTGGCAGTGTC-AAAGGTACCGAGTCCA-----GCATCCCA-----CACACTG-GAGCCCTACTGGGGCTGGAAATCTCATTGCTCCCTCTCACCACAGACCATGTACAGAGCCAAGCGGGGGGGGGGGGGGGCCGGGGGAGGTCCCACGTGGTCAGCAAGGTGGGAG--GCCACCAG-CAAGCCAGCCTC-------TAGGGACCGATAGAGGTCACCTCCTA--------------------------AGAATCTTTCTTCC---AGGACATCAGTCTTGGAGGAAAGAAAG-GAACCAGCTGGCTGAGTTCTGATGAGGCTGCCTGGAGATGTGGGGGGTGGGGGTGGGGCTTGGCAGCCATTCCGGGCCAAAAGAGAGAAAGTAAACCCT----GGGGCT-GCCGGTGCCAGCCAAGTGCACCGGAC-------ACCACAGCGCC---------TC--AGGCTAAAGTCGGGTTCAAGTGCCTCTGGCTTCTCTATCAGCTGGCTAACGACTGGGACAAAGCTGATTCTGGCTCTGTACCAGATCT-------TTAGCTATAAAACAGGACAGTCCTCCT-----------GAAGGGGCACA----------CTTGTCCTGGCCACCTCTC--ACTAAGACTCATTCCCCCCTCCCTCCCCCTTCCCAAGGACCAGACAGATCCAAACTCCATCACCATCATCCAAA--------------CTCCCCAGT-------------GGCTGA--------TCTGAGCTC-CCGTGAGCAGGGCGCTGGAAGCTTGCTTGCCTTCTGCAGCCCGTGACAGGTGTACCCGTTACCAATTCAAGAGAAATG--ATGGCCTGCAAGCCCCAGGCCCTGTGGT-----CACCACA--------------------------ATTA-----------TAGTTGCTGCAGCAAAGTGTC---ACCCTGTGGTCACAGCAGGCAGGGGCATCTACATCTA----ATGAGATGCCAGAGATCTCATGGTGTTCCTAA-CCCAG s canFam1.chrUn 1834214 860 + 91062872 GTGCTGTGGCCTCCTCCTCAACCTGAGGGCCCAGTC----AGGATGCCCCAGAAGCAGCTAATGGTTTTTA-----TGGCAGATCAACTGG--------------CCCAAAGGCTCCGGGTCAGGCCC-ACGTCCCACATCCCACGCTGTAAATAAGCTTGTTGCTGGAAACCTCATCACCACTACTGCATGCCAGGCC----------CAGAAACAGTGCCTGGAAGCCAAGGGAAAA--------GGGC---------------------------------------------------------------CTCTGAGGGCCTGTCTTTTGAGTCTCAGATTCTGGATCTATCTTCA---AGGGTTTCATGCCAGCAG---------------------------CCAGGGCTGGCTGTC-----------------CAGTTCTGGGT------CCAGCTGGG---GGGTGGGGTGGGGAGGGAGCT----GTAGC---ATGGGAGCTGCAGCAGGGGCG---CTGAGAAAGCCAGCCAGCAGCAGATCCATCGGAGGTTCAGACC-GGGTCAGT-----GTGGCCTCCTAGCAGGCCAGTAGGAGGCAGTGGGCAAGTACATTC--ACCCT----CTGGCCCTAACTCCTCAGGCCTAACAC----------------------CTGAGGTTTACAAAGCTTCATGGCCTTATTCATCTCCCACTCC-AACAA-----------CCCTGTCTCCACCTCTTCTAAGAAGTC-----CCCTGGGATCTC---CCCACCCCCCAATAGCAGTCAGGG--CTTCTTGGTCTCCATTCTCGTTTGTAGAGGAATTAGTTTGACCCC-TTAGGAACAGGG---GTTAAGATTCACAGT--CCTACAGCCCACGGCCAGTGTT---------AATCCTGGAGGGACACAGGTCTCGGCAGG-CCCAAGCTGTCCTGCGCTATCCCCGTGTGCAGGGTGGTCCCGGTGTTAAAAATGACAGTGAAGAGGGCTCCCTTTCCCAGTTGCTTCTCTGCAGGCCACATCCACAGCCAGGAGTG------------AGAA-ACAAGAGCCCCTGCA-------ATCTTCCT-------- a score=14334.0 s hg17.chr7_random 512988 155 + 778964 CTGCCTTCCTCAGCCATCACC---TCCCAGGACAGGGCACGTTTTCCAGA---GTG-----------AAAGGCACC----GGGCTCATGGCACAGTGACAGGATTCCAGGCAGCTGG------TTCCACTGTAGCCCTCAGACCCTGGCTCCAAGCGCGAGGGCTGGAAAA----TGCTGCAGGAG s panTro1.chr6_random 67054188 155 + 67355074 CTGCCTTCCTCAGCCATCACC---TCCCAGGACAGGGCACGTTTTCCAGA---GTG-----------AAAGGCACC----AGGCTCATGGCGCAGTGACAGGATTCCAGGCAGCCGG------TTCCACTGTAGCCCTCAGACCCTGGCTCCAAGCGCGAGGGCCGGAAAA----CGCTGCAGGAG s mm5.chr5 136482739 153 + 149219885 CTGCCCTCTCTGGCTGTCACCAGTAACCAGGGTAGAGGACAGCCTCCAAGTACATT-----------ATAGACTTC----AAAC--------CTGTCACAGGGCCTCA-GCAGCCGG-------ACCATAATGGCTGCCAGACCC-AGCTCC-AGTGCGGTGGCTGGGAAGGTACAGCTGCAGCTG s canFam1.chrUn 1835074 151 + 91062872 ---CCCTCCT----CATCACT---TCTCAGGATGGGG-ATGTTCTTCAAG---GTC-----------AAAGGCATCCTGAGGGCCCATGGACCAATCACAAA--TCCAGGCAGCTGGTGCTGGTGCTCTGGTAACCAT-AGACCC-CACTCCAAGCACGTGGGAGGGGAGA------ATGCAGTGG s galGal2.chrUn 30530636 156 - 165033910 CCGCCACCCCAAAACNCCGCCA--CCCCAAAAAAGGGCNCAGACCCCACA---ACTCCGCCACCCCAAAGGACTCT----GACCCCAAAGCACTGTGAC-----CCCAAAGCACCGC------CACCCCAAAGGGCTC-TGACCC-----CAAAACACCGCCACCCCAAAG----CACTGCGACCC a score=332.0 s hg17.chr7_random 513143 3 + 778964 CGG s panTro1.chr6_random 67054343 3 + 67355074 CTG s mm5.chr5 136482892 3 + 149219885 TGG s rn3.chr16 61648035 3 + 90224819 CAG s canFam1.chrUn 1835225 3 + 91062872 CAT s galGal2.chrUn 30530792 3 - 165033910 CAA a score=658.0 s hg17.chr7_random 513146 8 + 778964 --GGCCACAG s panTro1.chr6_random 67054346 8 + 67355074 --GGCCACAG s rn3.chr16 61648038 8 + 90224819 --GACCCCAG s canFam1.chrUn 1835228 8 + 91062872 --GTCTGCAG s galGal2.chrUn 30530795 8 - 165033910 AACTCCGC-- a score=1995.0 s hg17.chr7_random 513154 13 + 778964 CCTCCCAGGGCGC s panTro1.chr6_random 67054354 13 + 67355074 CCTCCCAAGGCGC s rn3.chr16 61648046 13 + 90224819 GGTCTCAGGACCT s galGal2.chrUn 30530803 13 - 165033910 CACCCCACAACTC a score=1524.0 s hg17.chr7_random 513167 9 + 778964 CACCACCCC s rn3.chr16 61648059 9 + 90224819 CAGAACCCC s galGal2.chrUn 30530816 9 - 165033910 CGCCACCCC a score=26370.0 s hg17.chr7_random 513176 269 + 778964 -----AGGGCTGGAAAACGCTGCAGGA--GCGGGGCCACGGCCTCCGAAGGCACCACCACCCCAA--------GGCTGGAAAA------TGCTGCAGGA--GCGGGACCACGGCCTCCGAGGGCACCACCACCCCAAGGCTGGAAAACGCTGCAGGAGCGGGGCCACGGCCTCCGAGGGCGCCACCACCCCAGGGCTGGAAAACGCTGCAGGA--------GCGGGGCCACGGCCTCCGAAGGCACCACCACCCCAGGGCTGGAAAACGCTGCAGGAGCGGGGCCACGGCCTCCCAGGGC s panTro1.chr6_random 67054320 269 + 67355074 -----AGGGCCGGAAAACGCTGCAGGA--GCTGGGCCACAGCCTCCCAAGGCGCCACCACCCCAG--------GGCTGGAAAA------CGCTGCAGGA--GCGGGGCCACGGCCTCCCAGGCCACCACCACCCAAGGGCTGGAAAATGCTGCAGGAGCGGGGCCACAGCCTCCGAGGGCGTCACCACCCCAGGGCTGGAAAACACTGCAGGA--------GTGGGGCCACGGCCTCCGAGGGCGCCACCACCCCAGGGCTGGAAAACACTGCAGGAGCGGGGCCACGGCCTCCCAGGGC s rn3.chr16 61648068 237 + 90224819 -----AGGATCTCAGGA--CTTCAGGACCCCAGGACCTCAGAACCTCAGGACCTCAGAACCCCAG--------GACCCCAGGA--------CCTCAGGACCCCAGGACCTCAGGACCTCAGGACCCCAGGACCCCAGGACCTCAGAACCT--------CAGGACCTCAGAACCTCAGGACCTCAGGACCCCAGGACCTCAGAACCC--CAGGA------TCTCAGGACTTCAGGACCCCAGGACCTCAGAACCTCAGGACCTCAGAAC------------------------CCCAGGAC s galGal2.chrUn 30530825 267 - 165033910 AAAAAAGGGCT--------CT----GACCCCACAACTCCGCCACCCCAAAACTCCGCCACCCCAAAGGGCTCTGACCCCAAAACTCCGCCACCCCAAAA--AAGGGCTCT---GACCCCAAAACTCCGCCACCCC--------AAAACTCCGCCACCGCAAAGCACTGCCACCCCAAAACTCCACCACCCCAAAACTCCGCCACCCCAAAGGGCTCTGACCCCAAAACTCCGCCACCCCAAAACACCGCCACCCCAAAACTCCGCCACCCCAAAGCACTGCGAC--------CCCAAAGC a score=1252.0 s hg17.chr7_random 513445 11 + 778964 GCCACCACCCC s rn3.chr16 61648305 11 + 90224819 CCCAGGATCTC s galGal2.chrUn 30531092 11 - 165033910 ACCACCACCCC a score=237.0 s hg17.chr7_random 513456 6 + 778964 AGGTCT s rn3.chr16 61648316 6 + 90224819 AGGACC a score=-278.0 s hg17.chr7_random 513462 2 + 778964 GG s panTro1.chr6_random 67054326 2 + 67355074 GG s rn3.chr16 61648322 2 + 90224819 TC a score=5363.0 s hg17.chr7_random 513464 48 + 778964 AAAACGCTGCAGGAGCG--GGACCACGGCCTCCGAGGGCGCCACCACCCC s panTro1.chr6_random 67054328 48 + 67355074 AAAACGCTGCAGGAGCT--GGGCCACAGCCTCCCAAGGCGCCACCACCCC s rn3.chr16 61648324 48 + 90224819 AGAACCC--CAGGATCTCAGGACCTCAGAACCCCAGGATCTCAGGACCTC s galGal2.chrUn 30531103 48 - 165033910 AAAGGGCTCTGACCGCA--AAACTCCGCCACCCCACAACTCCGCCAACCC a score=14247.0 s hg17.chr7_random 513512 159 + 778964 -----AGGG------CTGGAAAACGCTGCAGGAGCG--GGGCCACGGCCTCCGAAGGCACCACCACCCCAAGGCTGGAAAACGCTGCAGGAGCGGGGCCACGGCCTCCGAGGGCGCCACCACCCCAGGGCTGGAAAACGCTGCAGGA--GCGGGGCCACGGCCTCCGAGGGCGT s panTro1.chr6_random 67054320 159 + 67355074 -----AGGG------CCGGAAAACGCTGCAGGAGCT--GGGCCACAGCCTCCCAAGGCGCCACCACCCCAGGGCTGGAAAACGCTGCAGGAGCGGGGCCACGGCCTCCCAGGCCACCACCACCCAAGGGCTGGAAAATGCTGCAGGA--GCGGGGCCACAGCCTCCGAGGGCGT s rn3.chr16 61648372 151 + 90224819 -----AGGA------CCTCAGAACCC--CAGGATCTCAGGACCTCAGGACCCCAGGACCTCAGAACCCCAGGACCTCAGAACCC--------CAGGACCTCAGAACCCCAGGATCTCAGAACCCCAGGACCCCAGGACCC--CAGGACCTCAGAACCTCAGGACCCCAGGACCT s galGal2.chrUn 30531151 157 - 165033910 AAAAAAGGGCTCTGACCCCAAAACAC--CATCACCCCAAAACTCCGCCACCCCAAAACTCCGCCACCCCAAA-----AAAGGGCTCTGACCCCACAACTCCGCCACCCCAAAACTCCGCCACCCCAAAGGGGTCTGACCCCAAAGCA--CTGTGACCCCAAAGCAC-------- a score=21743.0 s hg17.chr7_random 513671 174 + 778964 CACCACCCCAG--------GGCTGGAAAACGCTGCAGGA--GCGGGGCCACGGCCTCCCAGGGCGCCACCACCCCAGGGCTGGAAAACGCTGCAGGAGCGGGGCCACGGCCTCCCAGGGCGCCACCACCCCAGGGCTGGAAAACGCTGCAGGAGCGGGGCCACGGCCTCCCAGGGCGCCACCAC s panTro1.chr6_random 67054367 174 + 67355074 CACCACCCCAG--------GGCTGGAAAACGCTGCAGGA--GCGGGGCCACGGCCTCCCAGGCCACCACCACCCAAGGGCTGGAAAATGCTGCAGGAGCGGGGCCACAGCCTCCGAGGGCGTCACCACCCCAGGGCTGGAAAACACTGCAGGAGTGGGGCCACGGCCTCCGAGGGCGCCACCAC s rn3.chr16 61648523 174 + 90224819 CAGAACCCCAG--------GACCTCAGAACCC--CAGGACCTCAGAACCCCAGGATCTCAGGACCTCAGAACCCCAGGACCTCAGGACCTCAGAACCCCAGGACCTCAGGACTTCAGGACCCCAGGATCTCAGGACTTCAGGACCTCAGAACCCCAGGATCTCAGGACCCCAGGACCCCAGGAT s galGal2.chrUn 30531308 169 - 165033910 CACCACCCCAAAGGGCTCTGACCCCAAAACACCGCCACC--CCAAAGCACTGCGACCCCAAAACTCCGCCACCCCAAAACTCCGCCACCCCAAAAAA---GGGCTCTGAC--CCCAAAACTCCACCACCCCAAAACTCCGCCACCCCAAAGCACTGCAAC--------CCCAAAGCACCGCCAC a score=4388.0 s hg17.chr7_random 513845 37 + 778964 --CCCAGGGCT-------GGAAAACGCTGCAGGAGC-GGGGCCACGG s panTro1.chr6_random 67054541 37 + 67355074 --CCCAGGGCT-------GGAAAACACTGCAGGAGC-GGGGCCACGG s rn3.chr12 30559005 45 - 46649226 --CCAAGGGCTGTGGCTGGGAAAGCACAGCTGCAGCTGTGGTAACAG s galGal2.chrUn 30531477 45 - 165033910 CCCAAAGGGCTCTGACC-CCAAAACACCGCCACCCC-AAAGCACTGC a score=5362.0 s hg17.chr7_random 513882 17 + 778964 CCTCCCAGGGCTCTGTG s panTro1.chr6_random 67054578 17 + 67355074 CCTCCCAGGGCTCTGTG s rn3.chr12 30559050 15 - 46649226 CTGGCT--GGCTCCGAG s canFam1.chrUn 1835255 17 + 91062872 CCACCCAGGGCTCTGTG s galGal2.chrUn 30531522 17 - 165033910 CACCCCAAAACTCCGCC a score=1196.0 s hg17.chr7_random 513899 8 + 778964 GGCTG-CAA s panTro1.chr6_random 67054595 8 + 67355074 GGCTG-CGA s mm5.chr5 136482941 8 + 149219885 GGCTG-CAA s rn3.chr12 30559065 7 - 46649226 CGCTG--GA s canFam1.chrUn 1835272 9 + 91062872 GGCTGGGGA s galGal2.chrUn 30531539 8 - 165033910 AACCC-CAA a score=62274.0 s hg17.chr7_random 513907 520 + 778964 TACT--TGTTTTCTTTCCACGGCT------------------------GCTGCTTCAAAGCACAGGCCG--GGCCTTGGAAGTG-----------------------------------GAGCGCAGTGGA---------AGAGCCA----------GGCACACCCCCACCTCCCCCTT---CCAGGACCAGGG-----------------CACTTGAAAGGTG----TGGAGGGGGCTG----------GGCCAGGCCAGGCGAAGGTGACCGTGGCTCCTAGCAGGTGAG-----------------CAGCTGAG-------------------ATGTACC-----------------------------TGAGGGCTCGGCCAG------------------------------CCCCATC----GGAGAGGC---------------------------------------------------AAACCCCCAGGCAGGTG---------------------------------GTCCTGTTGTCAAAACTGGCCGGCCGGGAGC---TGGAAAACAGGCCCAAACTGCGCCT-GTGCTGGCAGGTGGCAGGCAGGCAGCGGGCAGCGGTTGGGGTCCTGGCTGGGGGTGCAAGGTC----AGCCTGCATCTGAGGCCTGTGGGTACCCAGGGGGTGGCCTATCCCATTGCCCTGGGGGTCCCACGGCTC---------------CCTGTACAAACTCAGATGCACTTGATTTTGTTATTATTG-TTTTAATTTGGTCTGAACCTTTGTTCTAAGTGAAGAGACATAGCTTTCCAAAGGC s panTro1.chr6_random 67054603 520 + 67355074 TACT--TGTTTTCTTTCCACGGCT------------------------GCTGCTTCAAAGCACAGGCCG--GGCCTTGGAAGTG-----------------------------------GAGTGCAGTGGA---------AGAGCCA----------GGCACACCCCCACCTCCCCCTG---CCAGGACCAGGG-----------------CACTTGAAAGGTG----TGGAGGGGGCTG----------GGCCAGGCCAGGCGAAGGTGACCGTGGCTCCTAGCAGGTGAG-----------------CAGCTGAG-------------------ATGTACC-----------------------------TGAGGGCTCGGCCAG------------------------------CCCCATC----GGAGAGGC---------------------------------------------------AAACCCCCAGGCAGGTG---------------------------------GTCCTGCTGTCAAAACTGGCCGGCCGGGAGC---TGGAAAACAGGCCCAAACTGCGCCT-GTGCTGGCAGGTGGCAGGCAGGCAGCGGGCAGCGGCTGGGGTCCTGGCTGGGGGTGCAAGGTC----AGCCTGCATCTGAGGCCTGTGGGTACCCAGGGGGTGGCCTATTCCATTGCCCTGGGGGTCCCACGGCTC---------------CCTGTACAAACTCAGATGCACTTGATTTTGTTATTATTG-TTTTAATTTGGTCTGAACCTTTGTTGTAAGTGAAGAGACATAGCTTTCCAAAGGC s mm5.chr5 136482949 659 + 149219885 AACT---------ACTCAGTGGCT-------------------CCCAGGCTGTTTCAAAGTGCCAGCCT--GGGCTTGAAAGAG---------------------------------------TCAACAGA---------TGATCCACCTGCCGACCAGGTCATCTGAGACCCGTGTGG---CCAGGGCGAGAGCTTGCTGTTCTCTGCATCCCTTGGCAGGTGCTACTGAAAGCGAGGA----------GACCAGATAGGGAGAAGGTGATCCGGGCTCCCAATAGGTGAGTAGCGCAAAAGACCAACCAGCTGGG-------------------AGACTCCAGACAGCAGAAAAGACCATGGTCTATGGAAGAGAGTCCAGTCAGCGGTGGGGAGACTCAGACTACACAACAGATCCCCGTCTGTAGTAGAGGCCACAGTTGGCATAGGAGGCCCATTCTGTGAGGGTGACCCCTGTCAGTAGAGACAACTCCATTAAGGAA---------------------------------ATCTGGTTGTGAGAAGCGACCTGTCTATAGTACACAGAAAGCAAA--------GGGTCT-----TGGTGGGTGGCAGATGAAGATTTGGC--CCACTGAGGTCATCAACAGGGCACCAAGTTA----AGTATGCAACTGAGGCCTGTGGACAGCTAAAG---GGCTTGTACCCACAGCCATGAGGTTCTGAGGCTCCAGGTGTCAGAG-AACCGGAGCAAACTCAGACCCACCTGG--TTGTTGTCA--------------GTCTGGCCCCTTG-CCTGGGTGAGCACATGCCGACTG-TAAAGGC s rn3.chr12 30559072 684 - 46649226 CACG--TGCTTTCTTTCCACAGCTGCAAAACTACTCAGTGGTTCCCAGGCTGCTTCAAAGCGCCAGCCT--GGGCTTGGAAGAGTAGACAGATGATCTACCTGCCCACCAGGTCATCTCGAGCCCACTGTGCCTGGGGCTAGAGCTT----------GCCCCATGTTCTCTCTTCTCTGCATCCCGTGGCAGGG-----------------C----------TG---CTGAAAGAGAGGA----------GACCAGATTGGGAGAAGGTGACCCGGGCTCCCGATAGGTGAGTAGCGCAAAAGACCAACCAGCTGGGTGACTCCAGTCAGCAGAGAAGACCAT-------------------GGTCTGTGGAAGAGAGTCCAGTCAGTGGTGGAGAAACTCAATCTTCACAACAGATCCCAGTCTATAGTGGAGAC-ACGGTTGGCATGG-------------------------------------GAAGCCCCAGTCAGCTGTTTGAGGCCCATTCTGTGAGGGTGACCCTGGGCATCCTGCTGTGAGAAGCGACCTGTCTCTAGAACACAGAATGCAAA--------GGGCCT-----TGACGGGTGGCAGATGAAGATTTGGC--ACACTGGGGTCACCAACAGGGCACCAAG-TC----AGTGTGCAACTGAGGGTTGTGAACACCAGAAGAGTTTCTTCTACCCATGGCCCTGAGGTTCTGCGGCTCCAGGTGTCAGGG-AACTGTAGCAAGCTCAGACCCACCGGA--CTGTTGTCA--------------GTTTGGCCCCTTG-CCTGGGTAAGCACATGCC----------GAC s canFam1.chrUn 1835281 515 + 91062872 CACGTGTGTTTTCTTTCCATGGCT--------GCTAAACCAATCACA-GCTGCATCCAAGGGCCAGGCGCAGGCCTCGGCCGTG----------------------------------GGAGCAC---------------AGATGCA------------CACAT------------------CCAGGGCCTGGG---------------ACCACTTCAGAGGCTGCGGTGGAGGGGCAGGGCATGAGCATGGCCTGGCCAGGTGAGGGTGGTCCAGGCTCCCAATAGGTGAG-----------------CAGCTGAG-------------------AAGCGCC------------------------------------------AG------------------------------CACTCT--------GAGG----------------------------------------------------GGAGCCCCTAACAGGTG---------------------------------GTCCTCCTGGGAAAA---GCCGGGGTTGCGCAATCAAGAAACAAA--------ATGCCCCGGGCTGTGGGGTTGC-TCCAACAACCTGTC--TGA--GAGGTCCTGGCAGGGAGTGTGTGTCCAGGTAGCATGAACCTGAGGCC-ATGGACAGCGGGTGGATGGTCTGTACTGACGCCACTGGGGTCTCCTGGCTCTAGTACAGAGAGGAAACATGGCCAACTCACAACCATTTGATTTTGCTATTATTACTCTTAACTAACTCTGAA-------CATGAGTGAAAACACATAGCTTTTAAAAGGC a score=-600.0 s hg17.chr7_random 514427 6 + 778964 CATACG s panTro1.chr6_random 67055123 6 + 67355074 CAGACG s mm5.chr5 136483608 6 + 149219885 TGATGG s rn3.chr12 30559756 6 - 46649226 GGATGG a score=35431.0 s hg17.chr7_random 514433 170 + 778964 GGTGAGGCTGGCCCCGGGGGGA-TCAAATGCCTCC-------CTCCTGGCCTCACTGCCA-GGC-TCATGTTAAAGACGCCCAGGGGATGTGCCATAGGC---ACTGCAT----------------------------CACCAAAGCTGGAGGCTCCCTCAGGACCAGGGAGACAGACAGGGA----TTGCAAACTCAGCCACCCCCGGGCCCAG s panTro1.chr6_random 67055129 170 + 67355074 GGTGAGGCTGGCCCCGGGGGGA-TCAAATGCCTCC-------CTCCTGGCCTCACTGCCA-GGC-TCATGTTAAAGACGCCCAGGGGATGTGCCATAGGC---ACTGCAT----------------------------CCCCAAAGGTGGAGGCTCCCTCAGGACCAGGGAGACAGACAGGGA----TTGCAAACTCAGCCACCCCCGGACCCAG s mm5.chr5 136483614 188 + 149219885 TGTGAGGCTGGGACTGGAGAAACCCGGAGGCCTCCCACCCATCCCCTGGCCTGATGCCAA-GGCTTTGTGTGGAAGA--ACCAGGGCCCAGCCCCCAAGTGCGACCGCATGGA-----------------------GCTCTTTGGGACAGAGGCTCCCTCA-CCCCAGATCGATGAACAGAGACAACTCATAAACTCACTGGCACATAGGCCCAG s rn3.chr12 30559762 180 - 46649226 TGTCAGGCTGGGGCTGGGGAAAACCGGAGGCCTCCCACCCATCACCTGGCCTGGTGCCAA-GGATTCGTGTGAAGGA--ACCAGGGCCCAGCCCCCAAGTGTGACCACGTGGA-----------------------GCTCTTTGGGACAGAGGCTCCCTCA-CCTCAGAGGGATGAACAGAGACAACTCATGAATTCACT--------GGCACAG s canFam1.chrUn 1835966 194 + 91062872 TAAAAGGCTGGCTCTAGTGGAG-TCAGA-----CC-------CTCCTCCCTTCGCAGCCATGGCTTTATGTTAAAGG-GACCCAGGGACATGCCGCAGGC--CACCGGATGTGAACACGCCAGCGAAAGGGCCTTTGCTCTCAGAGCCAGAGATGCTGTTGGGACCGTGGAGAC-GACGGGGC----TTGCAAAGTCTACCCCCAACGGCCCCAG a score=163.0 s hg17.chr7_random 514603 2 + 778964 TC s panTro1.chr6_random 67055299 2 + 67355074 TC s canFam1.chrUn 1836160 2 + 91062872 GC a score=-14.0 s hg17.chr7_random 514603 2 + 778964 TC s canFam1.chrUn 1836160 2 + 91062872 GC a score=4066.0 s hg17.chr7_random 514605 10 + 778964 AGGTGCAGGG s panTro1.chr6_random 67055301 10 + 67355074 AGGTGCAGGG s rn3.chr12 30559942 10 - 46649226 AGGCCCAGGG s canFam1.chrUn 1836162 10 + 91062872 AAGCCCAGGG a score=12898.0 s hg17.chr7_random 514615 112 + 778964 ATGGGGAGCACACCCCCCCCACCATCTCCAGGGAGC-ACCATCACCCAGGTGG-AGCAGGGCCCACAC--GTGTGAC-CTTCCAGCTTTCAGATAAGATGGAAACTCAGAAGCTCCC s panTro1.chr6_random 67055311 112 + 67355074 ATGGGGAGCACACCCCCACCCCCGTCTGCAGGGAGC-ACCATCACCCAGGTGG-AGCAGGGCCCACAC--GTGTGAC-CTTCCAGTTTTCAGATAAGATGGAAACTCAGAAGCTCCC s canFam1.chrUn 1836172 117 + 91062872 GCCAGAAGCATACACCCATGTCTGCATGGGTGGACCTACCAGGACCTGCATGGAAGGAGGGCCCAGGATGGAGTGACACTCTTAGGTCTAAGAGAAGGCAGAGATCCACAGGTTCCC a score=2392.0 s hg17.chr7_random 514727 25 + 778964 TGACCATCGCCTGGTTTCAACAGAG s panTro1.chr6_random 67055423 25 + 67355074 TGACCATCGCCTGGTTTCAACAGAG a score=100.0 s hg17.chr7_random 514852 1 + 778964 C s panTro1.chr6 160943817 1 - 161576975 c a score=21224.0 s hg17.chr7_random 514853 215 + 778964 CAGGTGAGGCTGCTGCCAC-TGGCTCCATC--------GCCACC---------------AAGGACCACCGACCC---AGGGGCTCTTGAGGGCTCTTCAAGGATGTGGCAGAA-------GCCACAGAGGTCAAAGGGCACACAAGGAAGAGGTGGAAGACCACCCCTGAGGGCCCCC----------GAA---ATCCCT----GTGGCCACGAGTTACAGA-------AGCTGGCGCAGGGAACAGCCATGACGGTGCAACTCTGAAGGGGA- s panTro1.chr6 160943818 215 - 161576975 caggtgaggctgctgccac-tggctccgtc--------gccacc---------------gaggaccaccgACCC---AGGGGCTCTTGAGGGCTCTTCAAGGATGTGGCAGAA-------GCCACAGAGGTCAAAGGGCACACAAGGAAGAGGTGGAAGACCACCCCTGAGGGCCCCC----------GAA---ATCCCT----GTGGCCACGAGTTACAGA-------AGCTGGCGCAGGGAACAGCCATGACGATGCAACTCTGAAGGGGA- s fr1.chrUn 214253204 261 + 349519338 CAGGTGACTCTGCTGCGGTGTGGCTCCAGCTGGGAGCTGACACCAGCCTGTAGGTCCAAGAGTGTCACCTCCCCACAAAGGGTTCCATACAGC------AGCCTGTGGTTGGACAGCAGGGCCATGGATGACAGAGGGCCCTGAAGGAGGGAAAGAGGGAAGACCTGCAGGGGCCCCTCCACCGTGGGGAAGCTGTCCCTGGTGGTGATCTCGA---ACAGACGGACACAGTCCTCGTAGGCCACAGCCA----AGTGCTTCTCCTGGGGGCTG a score=8068.0 s hg17.chr7_random 515068 51 + 778964 CCAGAGGG----------TGGCGAGGGTGTCTAGGGCAGGGGATGTGAG-----TCCATGGGGCAG s panTro1.chr6 160944033 51 - 161576975 CCAGAGGG----------TGGCGAGGGTGTCTAGGGCAGGGGATGTAAG-----TCCATGGGGCAG s rn3.chr16 72242044 51 + 90224819 CCAGAGGA----------CGGAGGGTGTGTCCAGAGGATGGAGGGTGTG-----GCCATAGGACAG s fr1.chrUn 214253465 66 + 349519338 CTGGCGAGGCAGATCACCTTGCACAGGCTCTCAGGTGGGGGGATGCAGAGCGTCTCCAGGGGGAGG a score=932.0 s hg17.chr7_random 515119 16 + 778964 GCTCAGCTATACATGC s panTro1.chr6 160944084 16 - 161576975 GCTCAGCTACACATAC s fr1.chrUn 214253531 16 + 349519338 GCTAATGGGTAGATCA a score=100.0 s hg17.chr7_random 515134 1 + 778964 C s galGal2.chrUn 30531111 1 - 165033910 C a score=-114.0 s hg17.chr7_random 515135 1 + 778964 T s fr1.chrUn 214253547 1 + 349519338 G a score=273.0 s hg17.chr7_random 515135 1 + 778964 T s panTro1.chr6 160944100 1 - 161576975 T s galGal2.chrUn 11045502 1 + 165033910 T a score=3262.0 s hg17.chr7_random 515136 16 + 778964 GACCTCCCAATCCGGA s panTro1.chr6 160944101 16 - 161576975 GACCTCCCAATCCGGA s galGal2.chrUn 11045503 16 + 165033910 GACCCCCATGATAGGA s fr1.chrUn 214255225 16 + 349519338 GATGTTCAAATCTGGG a score=1771.0 s hg17.chr7_random 515152 8 + 778964 CACTCCAG s panTro1.chr6 160944117 8 - 161576975 CACTCCAG s galGal2.chrUn 11045519 8 + 165033910 CACCCCCA s danRer1.chrNA 26564645 8 - 390413307 CAACTCTG a score=1331.0 s hg17.chr7_random 515160 4 + 778964 CCAT s panTro1.chr6 160944125 4 - 161576975 CCAT s mm5.chr16 3893863 4 - 98801893 CCTC s galGal2.chrUn 11045534 4 + 165033910 ACAC s fr1.chrUn 214255241 4 + 349519338 CCAC s danRer1.chrNA 26564653 4 - 390413307 TTAT a score=4291.0 s hg17.chr7_random 515164 14 + 778964 CCCCAAGGCTGAAC s panTro1.chr6 160944129 14 - 161576975 CCCCAAGGCTGAAC s mm5.chr16 3893867 14 - 98801893 TCCCTGGACAGACC s rn3.chr11 86092843 14 + 87800381 CCCCAGGACTGTTC s galGal2.chrUn 11045538 14 + 165033910 CCCCATGATGTGAC s fr1.chrUn 315438058 14 + 349519338 CTCCCATGTTAAGC s danRer1.chrNA 26564657 14 - 390413307 CCTCAACTCTGTTA a score=2568.0 s hg17.chr7_random 515178 101 + 778964 TCCCCCAACCCTGACACCCCCCAGGGGTGACCT----------CCCCTAACCC-AGACACCCCCCAAGAGTGACCTC------------------------------CTCC-CACCCTGACTCCCCCCAAGAGTGACCTCCCC s panTro1.chr6 160944143 101 - 161576975 TCCCCCAACCCTGACACCCCCCAGGGGTGACCT----------CCCCTAACCC-AGACACCCCCCAAGAGTGACCTC------------------------------CTCC-CACCCTGACATCCCCCAAGAGTGACCTCCCC s mm5.chr16 3893881 101 - 98801893 TCTCCTTGGACAGACCTCCCTCTGGACAGACCT----------CTCCCTGGAC-AGACCTCTCCTTGGACAGACCTC------------------------------CCTC-TGGACAGACCTCTCCCTGGAAAGACCTCCCT s rn3.chr11 86092857 100 + 87800381 TACCCCAGGACTG-CTCTACCCAGGACTGCTCT----------ACCCCAGGAC-TGCTCTATCCCAGGACTGCTCTA------------------------------CCCC-AGGACTGCCCTACCCCAGGACTGCTCTACCC s canFam1.chr5 745268 101 - 92064832 TCCCCGTGCCCTCGACACCCCCAGGAG-AATCA----------CCCCTGTGGC-CCCGACACCCTAAGAAGCATCAC------------------------------TCCTGCGCCCTCGACACCCCCAGGAGCATCACCACG s galGal2.chrUn 11045552 142 + 165033910 ACCCCAAGATGTGACACCCCCAAGAGGTGACCCCAAGAGGTGACCCCAAAGATGCGCCACCCCCAAAAGGTGACCCCCATGATACGACACCCCCATGATACGACACCCCCA-TGATATGACACCCCCAAAAGGTGCCACCCCC s fr1.chrUn 315438073 101 + 349519338 CCTCCCATGTTAGGCTCCTCTCAGGCTAGGCTC----------CTCCCAGCCT-AGGCTCCTCCCAGGTTAAGCTCC------------------------------TTCC-AGGCTAGGCTTCTCCCAGGTTAGGCCCCTCC s danRer1.chrNA 26564671 97 - 390413307 TCCCTCAACTCTGTTATCATC-------AACTC-----TGTTATCCTCAACTC-TGTTATCCCTCAACTCTGTTATC------------------------------AT---CAACTCTGTTATCCTCAACTCTGTTATCCCT a score=-62031.0 s hg17.chr7_random 515279 291 + 778964 CAAC-TCAGACACCCCCCAAGGCTGACCTC--------------------------CCCCA--ACCCAGACACCCCCCAAGGCTGACCTCCCCCAACCCAGACACC---------------CCCCAAGGCTGACCTC---------C--CCCA--ACCCAGACAC--CACAAGGCTGACCTCCCCCAAA--CCAGATACCCCCCAAGGCTGACCTC--------------------------------------------ACCCAACCCTGACACCCTCCGA--------------------------------------------GGTTCACCTCCCTCAACCCAGACACCCCCCAAGGC-TGACCTCT-CCACCCCGGCG----TCCCCCCCAG--GCTGACCTCCCACAACCTG---------------GAC------A------CCCCAG------CCACCCCCAAGGCTGACCTCC s panTro1.chr6 160944244 257 - 161576975 CAAC-CCAGACA--CCACAAGGCTGACCTC--------------------------CCCCA--AACCAGACACCCCCCAAGGCTGA-----------------------------------------------CCTC---------C--CCCA--ACCCAGACAC--CACAAGGCTGACCTCCCCCAAA--CCAGATACCCCCCAAGGCTGACCTC--------------------------------------------ACCCAACCCTGACACCCTCCGA--------------------------------------------GGTTGACCTCCCTCAACCCAGACACCCCCCAAGGC-TGACCTCT-CCACCCCGGCG----TCCCCCCCAG--GCTGGCCTCCCCAAAACTG---------------GAC------A------CCCCAG------CCCCCCCCAAGGCTGACCCCC s mm5.chr16 3893982 270 - 98801893 CTGG-AAAGACCTTCCCCTGGACAGACCTT--------------------------CCCCT--GGACAGACCTTTCTCTGGACAGAGTTCCTCCCATACAGATCTT---------------TCTCTGGACAGACCTC---------CCTCTCG--ACATACGTTC--CCCTGGACAGACATCCCTCTGG--ACAGACCTTCCCCTGGACAGAATTT--------------------------------------------CCCCTGGACAGACCTCCCTCCA--------------------------------------------GACATACTTTTCCCTGGACAGACATCCCTCTGGAC-AGACCT--------------------TCCCCTGG--ACAGAACTTCC----CCTG---------------GAC------A----------GG------CCTCCTTCCGGACAGACTTTC s rn3.chr11 86092957 301 + 87800381 CAGG-ACTGCCCTACACCAGGATTGCTCTA--------------------------CCCCA--GGACTGCCCTGCCCCAGGACTGCCCTACCCCAGGACTGCTCTA---------------TCCCAGGACTGCTCTA---------C--CCCAGGACTGCTCTAT--CCCAGGACTGCTCTTCCCCAGG--ACTGCTCTACCCCAGGACTGCCCTA--------------------------------------------CACCAGGACTGCTCTATCCCAG--------------------------------------------GACTGCTCTACCCCAGGACTGCCCTACCCCAGGAC-TGCTCT-----ACCCCAGGACTGCCCTACCCCAG--GCTGCTCTACC----CCAG---------------GACTGCTCTA------CCCCAGGACTGCCCTACCCCAGGACTGCTCTAC s canFam1.chr5 745369 300 - 92064832 CGGC-CCCGACATCCCCAGGAGCATCACCC--------------------------CCACA--CCCTCGACACCCCCAGGAGCATCACCCCTGCAGCCCCGACACC---------------CCCAGAAGCATCACCC---------T--CGCG--GCCACGACAC--CCCCAGGAGCATCACCCCTGTGGCCCCGACACCCCCAGGAGCATCACCC--------------------------------------------TCGCGGCCACGACACCCCAGGA--------------------------------------------GCATAATC-CCCATGCCCTCGACACCCCCAGGAGCATCACCCCTGTGGCCCCGACA-------CCCCAAGGAGCATCACTCCTGCGCCCTC---------------GAC------AC-----CCCCAGGAGCATCACCCCCACACCCTCAACACC s galGal2.chrUn 11045694 348 + 165033910 AAAA-TGCGCCACCCCCAAGAGGTGACCCCAAAGATGCGCCACCCCCAAAAGGTGACCCCAATGACACGACACCCCCATGATATGACACCCCCATGATATGACACC---------------CCCAAGAGGTGACCCCAAGAGGTGAC--CCCAAAGATGCGCCAC--CCCCAAA-AGGTGACCCCCAGA--CGTGACACCCCCAAAAGGCGCCACC--------------------------------------------CCCAAAAAGTGCCACCCCCAAG--------------------------------------------AGGTGACC-CCCATGATAC-GACACCCCCAAAATG-TGACACCT------CCAAGAGGTGACCCCCCAAG--ATGTGACCCCCATGATATGACACCCCCATGATATGAC------AC-----CCCCAAAAGGCGACACCCCCAGATGTGACACCC s fr1.chrUn 315438174 286 + 349519338 CAGGTTCAGGCTCCTCCCAGGCTAGGCTCC--------------------------TCCCA--GGTTATGCTCCTCCCAGGCTAGGCTCCTCCCAGGCTAGGCCCC---------------TCCCAGGCGAGGCCCC---------T--CCCA--GGCGAGGCTCCTCCCAGGCTAGGCTCCTCCCAGG--CGAGGCTCCTCCCAGGCTAGGCTCC--------------------------------------------TTCCAGGCTAGGCTCCTCTCAG--------------------------------------------GCTAGGCTCCTCCCAGGCTATGCTCCTCCCAGGCT-AGGCCCCT-----CCCAGGCGAGGCTCCTCCCAG--GCTAGGCTCCT----CCCA---------------GGC------T----------AG------GCTCCTCCCAGGTTAGGCTCC s danRer1.chrNA 26564413 399 - 390413307 CAAC-TCCGTTATCCCTCAACTCCGTTATC--------------------------CCTCA--ACTCTGTTATCCCTCAACTCTGTTATCCCTCAACTCTGTTATCCTCAACTCTGTTATACCTCAACTCTGTTATC---------C--CTCA--ACTCTGTTAT--CATCAACTCTGTTATCCTCAAC--TCTGTTATCCCTCAACTCTGTTATCATCAACTCTGTTATCCTCAACTCTGTTATCCTCAACTCTGTTATCCTCAACTCTGTTATCCTCAACTCTGTTATCCTCAACTCTGTTATCCCTCAACTCTGTTATCATCAACTCTGTTATCCTCAACTCTGTTATCCCTCAACTC-TGTTATCATCAACTCTGTTA------TCCTCAAC--TCTGTTATCCCTCAACTCT---------------GTT------ATCATCAACTCTG------TTATCCTCAACTCTGTTATCC a score=2458.0 s hg17.chr7_random 515570 18 + 778964 CCCA----------------AGGCTGACCTCCCC s panTro1.chr6 160944366 34 - 161576975 CCCAACCCTGACACCCTCCGAGGTTGACCTCCCT s mm5.chr16 3894252 18 - 98801893 CCCT----------------GGACAGACCTCCCC s rn3.chr11 86093258 18 + 87800381 CCCA----------------GGACTGCCCTACCC s canFam1.chr5 745669 18 - 92064832 CCCA----------------GGAGCATCACCCCC s galGal2.chrUn 11046042 18 + 165033910 CCAA----------------GAGGTGACACCCCA s fr1.chrUn 315438461 17 + 349519338 CCCA----------------GGCTAGGCTCCTC- s danRer1.chrNA 26564812 18 - 390413307 CTCA----------------ACTCTGTTATCATC a score=-12517.0 s hg17.chr7_random 515588 26 + 778964 C-ACCC--------AGACAATCCCAAAGG----TGACCT s panTro1.chr6 160944400 28 - 161576975 CAACCC--------AGACACCCCCCAAGG---CTGACCT s rn3.chr11 86093276 7 + 87800381 ----CA--------GGACT-------------------- s canFam1.chr5 745689 30 - 92064832 -GGCCC--------CGACACCCCCAGGAGCTCCTGGTCC s galGal2.chrUn 11046068 33 + 165033910 ---CCCCCATGATGCGACACCCCCAAAAT---GTGACCC s fr1.chrUn 315438479 27 + 349519338 CAGGCT--------AGGCTCCTCCCAGGT----TAGGCT s danRer1.chrNA 26564830 26 - 390413307 -AACTC--------TGTTATCCTCAACTC----TGTTAT a score=-1743.0 s hg17.chr7_random 515614 4 + 778964 TCCC- s rn3.chr11 86093283 4 + 87800381 GCTC- s canFam1.chr5 745720 4 - 92064832 TCCT- s galGal2.chrUn 11046110 4 + 165033910 GACA- s danRer1.chrNA 26564856 4 - 390413307 -CCCT a score=-160.0 s hg17.chr7_random 515614 4 + 778964 TCCC- s danRer1.chrNA 26564856 4 - 390413307 -CCCT a score=-428.0 s hg17.chr7_random 515618 11 + 778964 CCACCCAGACA s rn3.chr11 86093287 8 + 87800381 TACCCCAG--- s canFam1.chr5 745724 11 - 92064832 CTCTCCCGACG s galGal2.chrUn 11046114 11 + 165033910 CCCCCATGATA s fr1.chrUn 315438506 11 + 349519338 CCTCCCAGGCT s danRer1.chrNA 26564860 11 - 390413307 CAACTCTGTTA a score=0.0 s hg17.chr7_random 515629 8 + 778964 AAACACCC a score=-287.0 s hg17.chr7_random 515629 1 + 778964 A s rn3.chr11 86093295 1 + 87800381 G s canFam1.chr5 745735 1 - 92064832 A s galGal2.chrUn 11046125 1 + 165033910 C s fr1.chrUn 315438517 1 + 349519338 A a score=459.0 s hg17.chr7_random 515630 7 + 778964 AACACCC s rn3.chr11 86093296 7 + 87800381 ACTGCCC s galGal2.chrUn 11046126 7 + 165033910 GACACCC s fr1.chrUn 315438518 4 + 349519338 ---GGCT a score=-7298.0 s hg17.chr7_random 515637 31 + 778964 TC-----------CATCAAGGT-TGACGTCCCCCA----------ACTCTGAA s rn3.chr11 86093303 41 + 87800381 TA-----------CACCAGGAC-TGCTCTGCCCCAGGACTGCTCTACCCCAGG s galGal2.chrUn 11046133 43 + 165033910 CCATGATATGACACCCCAAGATGTGACACCCCCAAGAGGTG----AC------ s fr1.chrUn 315438522 24 + 349519338 CC-----------TCCCAGGCG-AGGCTCCTCCCAG----------------- s danRer1.chrNA 26564871 31 - 390413307 TC-----------CCTCAACTC-TGTTATCCCTCA----------ACTCTGTT a score=-27287.0 s hg17.chr7_random 515668 130 + 778964 ---ACCAACCC--------CCATCCAGATTG---------ACCTCTCTGCAC-CTGGACACCC--------------------------------------------------------CACCTGCCAACCAGG---CT-GACCTCCCC-----CTACCCAGACACCCCCAAGGCTGGCCTGCCCTCACCCT---GATGCCCCCCAAGGCTGACCTCAC s panTro1.chr6 160945193 132 - 161576975 ---ACCACCCC--------CCATCCAGATTG---------ACCTCTCTGCACGCTGGACACCC-------------------------------------------------------TCAGCTGCCAACCAGG---CT-GACCTCCCC-----TTACCCAGACACCCCCAAGGCTGGCCTGCCCTCACCCT---GATGCCCCCCAAGGCTGACCTCAC s rn3.chr11 86093344 122 + 87800381 ---ACTGCCCT--------ACACCAGGACTG-------------CTCTGCCC-CAGGACTGTT-----------------------------------------------------------CTACC--CCAGGA--CT-GCTCTACCCCAGGACTGCTCTG----CCCCAGGACTGTTCTACCCCAGGACT---GCTCTACCCCAGGACTGCTCT-AC s galGal2.chrUn 11046176 122 + 165033910 --------CCCAAGAGGTGACCCCAAAGATG-------------CACCACCC-CCAAAAGGTG-------------------------------------------------------------ACC--CCAATGACAC-GACACCCCC-----ATGATATGACACCCCCAAAAGGTGCCACCCCCAAGA-----GGTGACCCCAAGAGGTGACCCCA- s fr1.chrUn 315438546 126 + 349519338 ---GCTAGGCT--------CCTCCCAGGCTA-------------GGCTCCTC-CCAGGCTAGG-----------------------------------------------------------CTCCT-TCCAGG---CTAGGCTCCTCC-----CAGGCTAGGCTCCTCCCAGGCTAGGCTCCTGTTCATCTCTGGCCTCTCCATTAGGAGGACCTAAC s danRer1.chrNA 26564902 200 - 390413307 ATCATCAACTC---TGTTATCATCAACTCTGTTATCCTCAACTCTGTTATCC-CTCAACTCTGTTATCCTCAACTCTGNNNNNNNNNNCTGTTATCCCTCAACTCTGTTATCATCAACTCTGTTATCCTCAACT---CT-GTTATCCCT-----CAACTCTGTTATCCTCAACTCTG--TTATCCTCAACTC---TGTTATCCTCAACTCTGTTATCC- a score=5454.0 s hg17.chr7_random 515798 65 + 778964 CCGACCCTGACACCCCCCAAGGCTGACCTCCCCAA----------CCATGACACCCCTCCCAACGCTGGCCTGCC s panTro1.chr6 160945325 65 - 161576975 CCGACCCTGACACCCCCCAAGGCTGACCTCCCCAA----------CCATGACACCCCTCCCAGCGCTGGCCTGCC s rn3.chr11 86093466 59 + 87800381 CCAGGACTGCTCTACCCCAGGACTGCTCTATC-------------CCAGGACTGCTCTACCC---CAGGACTGCC s galGal2.chrUn 11046298 74 + 165033910 -AAGATGCGCCACCCCCAAAAGGTGACCCCAATGATACAACACCCCCATAATATGACACCCCAAGTTGTGACACC s danRer1.chrNA 26565102 62 - 390413307 TCAACTCTGTTATCCCTCAACTCTGTTATCCTCAA----------CTCTGTTATC---CTCAACTCTGTTATCCC a score=-11341.0 s hg17.chr7_random 515863 43 + 778964 CTC------------ACCCTGA--TGATGC-----------------CCCCCAAGGCTGACCTCCCC-----CAACCCT s panTro1.chr6 160945390 43 - 161576975 CTC------------ACCCTGA--TGATGC-----------------CCCCCAAGGCTGACCTCCCC-----CAACCCT s rn3.chr11 86093525 45 + 87800381 CTA------------CCCCAGGACTGCTCT-----------------ACCCCAGGACTGCCCTACAC-----CAGGACT s galGal2.chrUn 11046372 54 + 165033910 CCCAAGA----GGTGACCCCAA--AGATGC-------------GCCACCCCCAAGAGGTGACCCCAA-----TGACAC- s fr1.chrUn 28818565 44 - 349519338 ----------------CATCAC--CCATCA-----------------ACTCCAGGGCTAACCACGCCTGTTACGACCCT s danRer1.chrNA 26565164 69 - 390413307 ---TCAACTCTGTTATCATCAA--CTCTGTTATCGTCAACTCTGTTATCCTCAACTCTGTTATCCCT-----CAACTCT a score=-13739.0 s hg17.chr7_random 515906 25 + 778964 GACACCCCCC---------------------------------------------------------------------------------------------------CAAGGCTGGCCTGCC s panTro1.chr6 160945433 124 - 161576975 GACACCCCCCAAGGCTGACCTCCCCAACCATGACACCCCTCCCAGCGCTGGCCTGCCCTCACCCTGATGATGACCCCCAAGGCTGACCTCCCCCAACCCTGACACCCCCCAAGGCTGGCCTGCC s rn3.chr11 86093570 24 + 87800381 G-CTCTACCC---------------------------------------------------------------------------------------------------CAGGACTGCCCTGCC s galGal2.chrUn 11046426 25 + 165033910 GACACCCCAA---------------------------------------------------------------------------------------------------AAAGCCCCCCACTCC s danRer1.chrNA 26565233 21 - 390413307 ----------------------------------------------GTTATCCT-------------------------------------------------------CAACTCTGTTATC-- a score=7226.0 s hg17.chr7_random 515931 31 + 778964 -CTCACCCTGATGCCCCAGCCCCTCTCAAGGT s panTro1.chr6 160945557 31 - 161576975 -CTCACCCTGATGCCCCAGCCCCTCTCAAGGT s rn3.chr12 15985643 30 + 46649226 -CCCACCTGGATG-CCCAGCCTGACTCAGGGC s galGal2.chrUn 11046453 30 + 165033910 -CCCACCCCGATG-TCCCCCCCACCCCGATGT s danRer1.chrNA 26565254 32 - 390413307 CTCAACTCTGTTATCCTCAACTCTGTTATCGT a score=-6.0 s hg17.chr7_random 515962 7 + 778964 GAGTCCT s panTro1.chr6 160945588 7 - 161576975 GAGTCCT s rn3.chr12 15985673 6 + 46649226 CA-TGCT s danRer1.chrNA 26565286 7 - 390413307 CAACTCT a score=64.0 s hg17.chr7_random 515962 7 + 778964 GAGTCCT s danRer1.chrNA 26565286 7 - 390413307 CAACTCT a score=0.0 s hg17.chr7_random 515969 21 + 778964 ATGGGGCCCTCCTTACCAGGG a score=492.0 s hg17.chr7_random 515969 4 + 778964 ATGG s panTro1.chr6 160945595 4 - 161576975 ATGG s rn3.chr12 15985679 4 + 46649226 GGGG a score=0.0 s hg17.chr7_random 515969 8 + 778964 ATGGGGCC a score=1365.0 s hg17.chr7_random 515973 4 + 778964 GGCC s panTro1.chr6 160945599 4 - 161576975 GGCC s rn3.chr12 15985683 4 + 46649226 TGCC s canFam1.chrUn 89106496 4 - 91062872 GGCT a score=3997.0 s hg17.chr7_random 515977 13 + 778964 CTCCTTACCAGGG s panTro1.chr6 160945603 13 - 161576975 CTCCTTACCAGGG s rn3.chr12 15985687 13 + 46649226 CTGCTTACCCTGG s canFam1.chrUn 89106500 12 - 91062872 CTCCCTCCAAAG- s galGal2.chrUn 11046483 13 + 165033910 CCCCTTACTCGGG a score=-3038.0 s hg17.chr7_random 515990 67 + 778964 GT-GTTCCCCGAACGTGTTGGGAGCTCCTGCCCCCTGGTGTCCAGA-----GCGGGCACT-ACGACACCCCACA s panTro1.chr6 160945616 67 - 161576975 GT-GTTCCCCGAACGTGTTGGGAGCTCCTGCCCCCTGGTGTCCAGA-----GGGGGCACT-ACGACACCCCACA s rn3.chr12 15985700 73 + 46649226 TG-ATGGCCAGGCCTTATTTGGCCCTCCAACTACCTCATGTCAGAACGCAGGTAGGCAGTGATGATGGCCACTA s canFam1.chrUn 89106512 62 - 91062872 ---CCCTCCTGATGGGGTTTGGAGCGCCTGCCACCTGGCGTCCAGA-----AAGTACACT----ACAAGTGGTG s galGal2.chrUn 11046496 68 + 165033910 GTCGGCCACCAGGCAGGCCTGGACGCCATCGAATCCGAGGCCCGGA-----GCCGCCACG-GCGGCGGCCGCCA s danRer1.chrNA 26565293 56 - 390413307 GT-TATCCTCAACTCTGTTA-----TCATCAACTCTGTTATCCTCA-----------ACT-CTGTTATCCCTCA a score=-9964.0 s hg17.chr7_random 516057 53 + 778964 ----------GAGGAACTCTGGAATTCTAG-------------AGGCTGGGATCCCTGC---------------------------CTGACATGT-------------------------------CGGTTAGT s panTro1.chr6 160945683 51 - 161576975 ----------GAGGAACTCTGGAATTCTAG-------------AGGCTGGGATCCCTGC---------------------------CTGACATGT-------------------------------CGGTTA-- s rn3.chr12 15985773 100 + 46649226 ----------GAGGGCCCATGGAGTCCATGGCCAGCATCCCTCAGGCTGG--CCCATGC----------------TGA------CACTGACATATGGAGACGGGAGCTGTCTGTAAGGATGTAGTACAATCAGT s canFam1.chrUn 89106574 79 - 91062872 ----------CAGGAGCCC-AGAATTCTTG-------------AGGCTGGAGTCACCGTGAGATTAAGGAAAAAATGAGCAATTTCTAAAAATGT-------------------------------CAATTAAC s danRer1.chrNA 26565349 57 - 390413307 ACTCTGTTATCATCAACTCTGTTATCCTCA-------------ACTCTGTTATCCCTCA------------------------ACTCTGTTATC---------------------------------------- a score=-558.0 s hg17.chr7_random 516110 3 + 778964 TAC-- s canFam1.chrUn 89106653 3 - 91062872 TAC-- s danRer1.chrNA 26565406 3 - 390413307 --CCT a score=-838.0 s hg17.chr7_random 516110 3 + 778964 TAC-- s panTro1.chr6 160945734 1 - 161576975 --C-- s canFam1.chrUn 89106653 3 - 91062872 TAC-- s danRer1.chrNA 26565406 3 - 390413307 --CCT a score=5572.0 s hg17.chr7_random 516113 6 + 778964 CAACTC s panTro1.chr6 160945735 6 - 161576975 CAACTC s mm5.chr5 12627123 6 - 149219885 CAAATC s rn3.chr12 15985873 6 + 46649226 CAAATC s canFam1.chrUn 89106656 6 - 91062872 CAAAAC s danRer1.chrNA 26565409 6 - 390413307 CAACTC a score=72026.0 s hg17.chr7_random 516119 336 + 778964 ACA--AAGTCAGGCATACACAATCATTAAAACAAACATTTTTAATTAAATTTTCAAACATG--AAAGTATAAACGTTAATATTTGTTGA--AAAATATATACGGCATTTCCCCC----------GTGTGAACACAA-----TGGCTTCCGGTAACACTACCCACTTACAATGAGATC--TTTTAGGCACTTGGGTGTAGAATGTGCGAGAGG--GAAATGCAACTTTACTTTCCTGCTAC------CTATAGGGGCAACCACAATTAGATCTCATGAAATA----TTGTTTTCAACACTGTTAGCATTAACACCGACTTAAAAC----ATACGGTGACCGGACATATAACCTTTAAA--GTCCCAGTATATTTAAAA s panTro1.chr6 160945741 333 - 161576975 ACA--AAGTCAGGCATACACAATCattaaaacaaatatttttaattaaattttCAAACATG--AAAGTATAAACATTAATATTTGTTGA--AAAATACACACAGCATTTCCCCC----------GTGTGAACACAA-----TGGCTTCCGGTAACACTACCCACTTACAATGAGATC--TTTTAGGCACTTGGGTGTAGAATGTGCGAGAGG--GAAATGCAACTTTACTTTCCTGCTAC------CTATAGGGGCAACCACAATTAGATCTCATAAAATA----TTGTTTTCAACACTGTTAGCATTA---CCGACTTAAAAC----ATACGGTGACCGGACATATAACCTTTAAA--GTCCCAGTATATTTAAAA s mm5.chr5 12627129 329 - 149219885 ACA--CAGATGGCCACACA-AATAACTATAATAAATAATTT-------AATTCCATAAATGGCAAAGCAGAAATGTTAAAATTTGTTGG---------ACACGACCCCCCCCCCCCCCAACATTGTCTTAACAAAAATA-TAGGCTGCGGCTAA---GAACCACTTA----GAAATC---TTTAGGCACTTG---GTGGAAAAGACACTGGA--GAATGGCCACCTTAC-TGACTGCTACAGCAAGTGGTAGGGATGA----AGGCTGGTTTCCTAGTCTA----TCCTTTAC-CCACGGGCATCACTAATACTGA---GAAACAGAAACACCAGGACAGTGCACCCACACTGCAAGACATTCCAGTGTATTTAAAA s rn3.chr12 15985879 318 + 46649226 ACA--CAGATGGCCACACA-AATAACTGCAA-GAATAATTT-------AATTCCATAAAAGGCAAAGCAGAAATGTTAAAATTTGTTGG--AAA----------CTCGCCCCCC----AACATTATCTTAACAAAAATA-TTGGCTGCTGATAA---CAACCATTTA----AACATC--TTTTAGGCACTTG---GTGGAAAAGACACTGGA--GAATGACCACC-TAC-TGACTGCTAT------AAGCAAGTGGTA--GGGATGAAGGCTGGTTTCCTGTCTATCCTTTAC-CCACGGGCATCACTAACACTGA---GAAAC---AACACCAGGACATTGCACCCACATTGCAAGACATTCCAGTGTATTTTAAA s canFam1.chrUn 89106662 344 - 91062872 ACATTAAGACAGGTGTACaaaataattataataaatatttttaattaaattttCAAACACT--TTAGCATAAATGCTAATATTTGATTGTTAGAAAACACACAGTATTTTCCCC-------CTTGTGTTAATATAAATATTTGGCTTATGGAAATAATACCCATTTA----AAAATTTTTTTTAGGCACTTGGGTGTAGAAAGTGCTAGAGAATAAAAACCAATTTTACTTTACTTCTAC------TTACGAGAGCAACCAAAACTGTATTTGGTTAAATA----TTCTTTCA-ACATTG-CATCACTGAG-CTAA---GAAAA--AAATATTGTGACTATCCATGTAACATTTTGA--GTTCCAGAATATTTTAAA a score=3981.0 s hg17.chr7_random 516455 7 + 778964 CAGGAGA s panTro1.chr6 160946074 7 - 161576975 CAGGAGA s mm5.chr5 12627459 7 - 149219885 CGGGAGG s rn3.chr12 15986352 7 + 46649226 TTGGAGA s canFam1.chrUn 89107006 7 - 91062872 CAGGAAA a score=8251.0 s hg17.chr7_random 516462 56 + 778964 -AATCTGATAAGTTGTTAGGATTCTAAATTCCTTTTAGTCTGTTCACTGAGATATTA s panTro1.chr6 160946081 56 - 161576975 -AATCTGACAAGTTGTTAGGATTCCAAATTCCTTTTAGTCTGTTCACTGAGATATTA s rn3.chr12 15986359 50 + 46649226 -AATTTTATCAGC------GAGTCAAGACTGACATTGTCTTCGTCACAGGCTGATGG s canFam1.chrUn 89107013 54 - 91062872 AAATTTAACTGAT---AAAGACTTCAAGTTCCTTTTAGTCTGTTCACTGTGATACTG a score=0.0 s hg17.chr7_random 516518 2 + 778964 AA a score=302.0 s hg17.chr7_random 516518 2 + 778964 AA s panTro1.chr6 160946137 2 - 161576975 AA s rn3.chr12 15986409 2 + 46649226 AG a score=2238.0 s hg17.chr7_random 516520 8 + 778964 TTTCAGTA s panTro1.chr6 160946139 8 - 161576975 TTTCAGTA s canFam1.chrUn 89107067 8 - 91062872 TTTCAGTA a score=937.0 s hg17.chr7_random 516520 10 + 778964 TTTCAGTAGA s canFam1.chrUn 89107067 10 - 91062872 TTTCAGTAGA a score=1146.0 s hg17.chr7_random 516528 2 + 778964 GA s panTro1.chr6 160946147 2 - 161576975 GA s mm5.chr5 12627647 2 - 149219885 GA s canFam1.chrUn 89107075 2 - 91062872 GA a score=7961.0 s hg17.chr7_random 516530 150 + 778964 CAGAACCCAAAAAGAG-----ATTTCATT-TCTTTCTAATCACTTTGGCTTCTTTCTTTTTTGTTAAGTAGGTAAAAACCTTCTTGGTGGG---------CACCTAAGCAGGATGCAGCCAATAGTTCATGAACCAGCTGCGCACGTGAGGCTTAAAATCTAAGA- s panTro1.chr6 160946149 150 - 161576975 CAGAACCCAAAAAGAG-----ATTTCATT-TCTTTCTAATCACTTTGGCTTCTTTCTTTTTTGTTAAACAGGTAAAAACCTTCTTGGTGGG---------CACCTAAGCAGGATGCAGCCAATAGTTCATGAACCAGCTGCGCACGTGAGGTTTAAAATCTAAGA- s mm5.chr5 12627649 119 - 149219885 CAGAGCCCAGAGGAAGTGGATGGTTGGTT-GTTTTATAATC-CTTTGGCTTTCCT-----------GCAATGTGAAGAGCATTATGGTG----------------AATCTGAAAGCAGCCCA--------GGACC---------CCTGGGGCTTGTAATTTAAAA- s rn3.chr12 15986411 104 + 46649226 CAGAGCCCAAAGGAGA-GGATGGTTGGTTGTTTTTACAATCGAGTTGGCTTTCCT------------GCATGTG-------------------------------AATCTGAA-GCAGCCCA--------GGACC--------CCTCGGGGCCTGTGATAAAAAC- s canFam1.chrUn 89107077 132 - 91062872 CACAACTTAAGGAATG-----AATGAATT-TCTTTTTAATA------ACTTGCTT-----------------AAAAAATCATCTTGGTGGGGTGGGCATTTGCTCAAACAGAA---ATACTA--ACTCTGGAACACAGCAGGTGCACAAAGCTTTAAAACAAAAGG a score=0.0 s hg17.chr7_random 516680 4 + 778964 TGCT a score=290.0 s hg17.chr7_random 516680 4 + 778964 TGCT s panTro1.chr6 160946299 4 - 161576975 TGCT s rn3.chr12 15986516 4 + 46649226 TTAT a score=24730.0 s hg17.chr7_random 516684 199 + 778964 GCTGAAGTGGCTGCGGGAG-GAGCGGCTGCG---------ACTTACTTTTAATTTCAAATCAGCTGCAGATGTTTGGGAGCCCTCTCGATGAACAGAACAAATCACATAACA-TGCAGAATCCACTCAGAGGCTGTTATTCCAG---------------------------GGAAAGAGTGGGCAGGTGTCCTGAGGAGTACATTCTTGC-TGTCACAGTCTC---ACTGCTGGCACAGAG s panTro1.chr6 160946303 199 - 161576975 GCTGATGTGGCTGCGGGAG-GAGCGGCTGCG---------ACTTACTTTTAATTTCAAATCAGCTGCAGATGTTTGGGAGCCCTCTCGATGAACAGAACAAATCACATAACA-TGCAGAATCCACTCAGAGGCTGTTATTCCAA---------------------------GGAAAGAGCGGGCAGGTGTCCTGAGGAGTACATTCTTGC-TGTCACAGTCTC---ACTGCTGGCACAGAG s rn3.chr12 15986520 179 + 46649226 GTTCAAGCAGCTAATTGGG-AAGCTGGCGTGGGTGGGGGCATTTAAATTTAATTTTAGC-------------TTTCTGAGGCCTCT--GTGAAAAGTAGGCATGTTACAAAA-T----------CCCAGAATCTGCT----TAG---------------------------GAAAAACAGAAGCTGATG-CTCAAGCACCATCTGGTGGC-TGGTGGGATCCTGAGGCTGTGGACACGG-- s canFam1.chrUn 89107209 231 - 91062872 GCTGATTTGGCTGCCAGTGTGAGCAGGTGCC---------ATTTAGTTTTAATTTCAAATAACCTATAGATTTTTGGGAGATCTGTCAATGAACTATATAAATAAGACAAAAGTACAGAAGCCACTCAGTGAACATTATTTCAGAAACTGCTGGGCTTGAGATCTGTCTTAGGAGAATCCCAGCATATTTCTTACAGAGTACATTCTTGCTTGTGAATGTCTCCA-GCTGTCAACAGAGAG a score=109365.0 s hg17.chr7_random 516883 242 + 778964 GTGCCTTGTTTATGAGATTTAAAGGCCACAAACTCTGGCTCAGGTGGGGACAAGGGTGTGCCGTGGCTGAAACCAGCGTGGTCACTGTGTGGCTGGCACGGCCTGCACATGCTGCAGGAGCTGCTCGCAGTAGGTGGCCGAGCGGTGCTTGTGGATGACGGCCTCCGTCTCCCTCACCAGGAGATCTGGGAACAGCCCGCTGCCCTCTTTGAGGACCTCTGTAAAACAGAAAAACACCTTGA s panTro1.chr6 160946502 242 - 161576975 GTGCCTTGTTTATGAGATTTAAAGGCCACAAACTCTGGCTCAGGTGGGGACAAGGGTGTGCTGTGGCTCAAACCAGCGTGGTCACTGTGTAGCTGGCACGGCCTGCACATGCTGCAGGAGCTGCTCGCAGTAGGTGGCCGAGCGGTGCTTGTGGATGACGGCTTCCGTCTCCCTCACCAGGAGATCTGGGAACAGCCCGCTGCCCTCTTTGAGGACCTCTGTAAAACAGCAAAACACCTTGA s mm5.chr5 12627949 222 - 149219885 GTGTCTCAAGTGCGAGGTCTGCAGGCCAC---CACTGTCT---------------GCCTTCAGTAGCTGATGC--ACACAGTCACCGAGCAGCGGCCATGGTCTGCATGTGCTGCAGCAGCTGCTCGCAGTAGGTAGCTGAGCGGTGTTTGTGGACGACAGCCTCCGTCTCCCGCACCAGCACATCTGGGAACAGGACGCTGCCCTCCTTGAGGACTTCTAGAAGAGAGCATAGAACCCTGA s rn3.chr12 15986699 221 + 46649226 CTGTCTTAAATGCGGGGTCTCTGGG-TAC---CGCTGTCT---------------TCCTTCAGTGGCTGATGT--GCATGGTCACCGAGCGGCAGCCATGGTTTGCATATGCTGCAGCAGCTGCTCGCAGTAGGTAGCTGAGCGGTGTTTGTGGACAACAGCCTCCGTCTCCCGCACCAGCACATCTGGAAACAGGACGCTGCCCTCCTTGAGGACTTCTAGAAGAGAGCAGAGAGCCCTGA s canFam1.chrUn 89107440 215 - 91062872 GTGCCAGAGCTGTGAGGTGCGTGAG-GAT------------------------GGGTACTGGGTGCCTGCTCC--ATGCTTTTATTGGGCGAGTGGCAGGGCCTGCAGGTGCTGCAGAAGCTGTTGGCAGTGGGCAGGAGAGCGGTGCTTGTGGACGACAGCCTCTGTCTCTCTCACCAGGAGCTCAGGGAACAGAACGCTTCCTGCTTTGAGGACCTCTGTAAAACAGCAACACACCCTTA a score=4268.0 s hg17.chr7_random 517125 14 + 778964 ACATGCCAGAAACA s panTro1.chr6 160946744 14 - 161576975 ACATGCCAGAAATA s rn3.chr12 15986920 11 + 46649226 ---AGCCAGCAGCA s canFam1.chrUn 89107655 14 - 91062872 AAATGCCAGAAATA a score=9761.0 s hg17.chr7_random 517139 64 + 778964 AACATGAAACCAATCTTACCTCTCGTGCAAATTGGCTTTGTAGTGAAGTTCAAGCATCTGTAAA s panTro1.chr6 160946758 64 - 161576975 AACATGAAACCAATCTTACCTCTCGTGCAAATTGGCTTTGTAGTAAAGTTCAAGCACCTGTAAA s canFam1.chrUn 89107669 62 - 91062872 GATATTAAACCAA--CTACTGCTTATGTGAATAAGCTTCATGTTCAAGTTAAAACAGCTATGAA a score=10761.0 s hg17.chr7_random 517203 115 + 778964 AGCATCTGCAAATAACCTGACGCTGCTGGGTGGACATACAGTAGTCACAATGCGGATACGAGTGATCCGACTCACAATGTGGGGACGAATGACCTGACGCTGCTGGATGGGGACA s panTro1.chr6 160946822 115 - 161576975 AGCATCTGCAAATGACCTGACGCTGCTGGGTGGACATACAGTAGTCACAATGCGGATATGAGTGATCCGACTCACAATGTGGGGACGAATGACCTGACGCTGCTGGATGGGGACA a score=33555.0 s hg17.chr7_random 517318 362 + 778964 CAGTAGTCACAATGTGGATACGAGTGACCCGACTCACAATCTGGGGACGAATGACCTGACGCTGCTGGATGGGGACCCAGTAGTCACAATGTGGATACGAATGACCTGATCCTGCTGGATGGGTGTCCAGCGATCATAATGTGGATACAAGTGACCTGATGCTGCTGGCCACGTGCACGGCAGTCCCAGTGTGGACACGAGCGACCTGATGCAGCGGATGGGTGCACAGTAGTCATAACGTGGATATAAGTAAGCTGACACTCTGGACGGGTGGACGGCAGTCAGAATGTGGATACGAATGACCTGAGTCACAACGTGGACAAGTGACCTGATGCTGCATGGTCACTATGTGAATATGAGGA s panTro1.chr6 160947399 362 - 161576975 CAGTAGTCACAATGTGGGTACAAGTGACCCGACTCACAATGTGGGGACGAATGACCTGACGCTGCTGGATGGGGACCCAGTAGTCACAATGTGGATACGAATGACCTGATTCTGCTGGATGGGTGTCCAGCGGTCATAATGTGGATACAAGTGACCTGATGCTGCTGGCCACGTGCACGGCAGTCCCAGTGTGGACACGAGCGACCTGATGCAGCGGATGGGTGCACGGTAGTCATAACGTGGATATAAGTGAGCTGACACTCTGGACGGGTGGACGGCAGTCAGAATATGGATACGAATGACCTGAGTCACAACGTGGACAAGTGACCTGATGCTGCATGGTCACTATGTGAATATGAGGA a score=35864.0 s hg17.chr7_random 517680 235 + 778964 ACCTGATGCTGCTGGGTGGGTGCACGGCAGTCACAACGTGCATTCAAAGAACTGAAAATCGCCTCCTGGCAGTTGTGGGCAGACCATGAAATGATGTCCTGCAGAGTC-------------TTCAGGTGGCATTTTTGGGCTTAGAAACAGGTTTCACAGGAGCAAATA----GGCTCAGAAAAACAGGCGACTTTCTTATCCAATTTGCGGATGCCAATTCACCTGCC--GCAGTGACTGCAAACCTCCCACG s panTro1.chr6 160947761 235 - 161576975 ACCTGATGCTGCTGGGTGGGTGCACGGCAGTCACAACGTGGATTCAAAGAACTGAAAGTCGCCTCCTGGCAGTTGTGGGCAGACCATGAAATGATGTCCTGCAGAGTC-------------TTCAGGTGGCATTTTTGGGCTTAGAAACAGGTTTCACAGGAGCAAATA----GGCTCAGAAAAACAGGCGACTTTCTTATCCAATTTGCGGATGCCAATTCACCTGCC--GCAGTGACTGCAAACCTCCCACG s canFam1.chrUn 89111402 249 - 91062872 ATCTGATGATGCTAGATTAGTACACAACAGTCACAGTGTAGACAAAAATAACTTCAAATAATTTTCTTGGAGTTGTTGGTAGATCAGGAAA----GTCTCTCAAAATCTCTGAGGGTGATGTTTGTGTGGCA-TTTTGGCCTTAGAAACAGGTTTTGCAATAGCAGATAAACTGGCTTACAAAAATCATCAATTCTCTTCTTACATTTACTGATGCTGattccgtcaacaaacaccagctgtaagccttctata a score=2614.0 s hg17.chr7_random 517915 20 + 778964 GGCCAGGCATCACCGACACA s panTro1.chr6 160947996 20 - 161576975 GGCCAGGCATCACCGACACA s canFam1.chrUn 89111651 20 - 91062872 tgccagatgctgtgGACATA s danRer1.chrUn 75491300 20 - 367113659 gGTCAGACCAGGGTGGATCA a score=7606.0 s hg17.chr7_random 517935 89 + 778964 GCCGGAAATGAACCCATGCTTACGGAGGGTTCATCGGGAAGCAGTGGCCGATGATGAAAATCAGGAAGGCAAACGTGTCAGGGGCTCGT------- s panTro1.chr6 160948016 89 - 161576975 GCCGGAAATGAAACCATGCTTACGGAGGGTTCATCGGGAAGCAGTGGCCGATGATGAAAATCAGGAAGGCAAACGTGTCAGGGGCTCGT------- s danRer1.chrUn 75491320 81 - 367113659 ----GGAGGGAAG----GTCCAGGGTGGGTTCAGCAGG--TCAGGGGCCCCGGCAGGGAACCA-GAGTGTAGCCG----AAGGGTCCGTCCCGAGT a score=11443.0 s hg17.chr7_random 518024 111 + 778964 GGTGG---TGTGTGTGATGGGGGCAGTGGGAGCTGCAGGGGTGGGGGCCAGAAAGG-GTTGGGCGTGTCTAG--CTGAGGCAGGAAGAGGATGGGGAGGTTGCTGCAGTGGCTGGGG s panTro1.chr6 160948105 110 - 161576975 GGTGG---TGTGTGTGATGGGGG-AGTGGGAGCTGCAGGGGTGGGGGCCAGAAAGG-GTTGGGCGTGTCTAG--CTGAGGCAGGAAGAGGATGGGGAGGTTGCTGCAGTGGCTGGGG s fr1.chrUn 28826056 106 - 349519338 GGTGG----ATCCGTGGTGGGTGGAGCCAGAGCTGCGGTGGGTGGGGCCAGAGCTGCGGTGGGTGGGGCCAGAACCGCGGT-------GGGTGGAGCCAGAGCTGCGGTGGGTGGAG s danRer1.chrUn 75491401 103 - 367113659 GGTGGAGAGGCACACCAGGGAGG-AGTGGGA--------GAGATGACCCAGGGACA-ATCCAGCAGG---AGAGACAAGGCAGGAGGTCTGTGGGGAGCCAGCTG-GATGAGAGGCA a score=34642.0 s hg17.chr7_random 518135 363 + 778964 AGTCTATCAGATTCTGCTGGGAGTTAAGAGGGGGTCCAGGAGGACCTCAAGGTCTCCGCCTTCAGTCTTGAGGACAGATGGCCACTGAGCCACTGAGGGTGGCGGAACCCGGCAGGCAGTCAGGGAG---GGGGGTAGCGGCCCAGGGTTCGGCACC-----AGGCAGCTGCACTTGTGTG--TGGAGCTGAGGC-------------CAGGAGAAGAGCTCTGAG-----------------GGAGCGGTGCAGACACAGCAGAGGAGCAGTGAGGGG-CCCACATGGGCGAGGGAAAGACCAAGAGACTGAGCACGGGCG------------------TCCCGCAGCCAGAGGAGGGTGC----GTGGCCGCCAGCTGTGC-----CTGGCGCTGCTCAGAGGTGCAGGCA-GGTGGACGG--CTGCAGATG s panTro1.chr6 160948215 364 - 161576975 AGTCTATCAGATTCTGCTGGGAGTTAAGA-GGAGTCCAGGAGGACCTGAAGGTCTCCGCCTTCAGTCTTGAGGACAGATGGCCACTGAGCCACTGAGGGTGGGGGGATCCGGCAGGCAGTCAGGGAG---AGGGGTAGCGGCCCAGGGTTCGGCACC-----AGGCAGCCGCACTCGTGTG--TGGAGCTGAGGC-------------CAGGAGAAGAGCTCTGAG-----------------GGAGCGGTGCAGACACAGCAGAGGAGCAGTGAGGGGCCCCCCATGGGCGAGGGAAAGACCAGGAGACTGAGCATGGGCG------------------TCCCGCAGCCAGAGGAGGGTGC----GTGGCCGCCAGCTGTGC-----CTGGCGCTGCTCATAGGTGCAGGCAGGGTGGATGG--CCGCGGATG s danRer1.chrUn 75491504 408 - 367113659 ACTGGACTGGAATCGGC--AGAGCT-----GGAGG-CAGGTGGACAGGAA--------CCGGCGGGGTTGGAGGCAAATGGACA-GGAGCCGGCAGGGCTGGAGGGAGCTGGATGGGAGCCGGTGGGGCTGGAGGCAGCTGGACAGGAGCCGGCGGTTCTGGAGGCAGCTGGACTGGAGCGGCTGGGCTGGAGGCAGCTGGACTGGAGCTGGGCAAGACGTCTGGGTGGCGTTGGTAAGGCGAGGAGCTGGGCTGGCGGGGCA-AGGAGCAGGGCTGGGGCCGGCA-GGGCAAGGAGACGGGCTGGGGGCTG-GCAGGGGCAGGACCTTCCATCCTGGTCTCCCCGAGTGAGAGGAGGGGGCGATAGTTGAAGTCAGAGGAGCATGTACTGGGGCTG-----GAGCCAACACA-GACGCACGGTTCTGGAGATG a score=103066.0 s hg17.chr7_random 518498 1180 + 778964 CCTGCCATGGGCCCAGGGCCTCGAGGAGGGGTAAGGCGGGCTGCTTCCAGGGAGCCTGCTGCCAGGCGGATGTGCggtgggggaggtgggggaggtgggggCGGCGTACAGGGCATCTGTGTTTTGTTTTTTTAAAGACAGGAGAAAGAATGGCCTGTACCGTGCAGTGGGGAAGGGAGATGCCCTGTGCAGTCCTGGGGAGGCGAGAGGGCCGGGGCTGCAGGCTGAGCTGGTGCACAGGGGCACTGGTCTCCTCGGCCTAGAGCAAGGTCCTGAGGACGAGTGAGGCTGAGGCTGAGAGTAGGAGAAGCTCAGAACTCGGGTTGATGGTGTGTAGTGCAGGACAGGAGAGCTGGGAGGGCGCAGGCAGGGCTGGGATTTGCCAGGGAGTGTGGGGAGCTGGGGGCGTTGCGTGGATCTGGCAGGATGGGCTGTCCCAGCGAGGCCTGCACGTGAGCTGCTGTCCTCCTTTTAAACAATTTCCAATTGGTCTCCAATTCGCAGCTTCTTTCCGTGACCTGGAGAGACCACGGGCCCCGCCGTGGATCAATGGGCTCTGGGGCTCCCTCACTGGCTGACAACCTGATTCCACGACTCAAGGcaggggctcccgacatgggctccaaggccctcggggtccccaggacccttcagagggtctgtgagtcaaagccaGGCATGTGGTCGCACGCAGAGCATGCCCGGCCTGCCCGTCACTGTGCTCACACCTGCGCAGATGCGGGAGCAGCTGAGGCCCACGCCCCCTGCCACACTCACCCTCGAGCACACGGCTTCACCTGCCACACTCACCCTCACGCACACGGCTTACACCCGCGAGTGGGCACCAGGTGCACCGCTTCACACGGAGGACCAGGGTCGTGCAGCAGAGCTGCttttcccaggaagaatggcggacggacgagcagtgcacccaccctggctgtgcggacgcgggatctggcagagcacggcgtgaaagtgaacggcccaagtccctcactcccagaacaaccgacagggtttgtggccgaggatacaagtcaagctctcacacaaaaaatcacaatgagccaaagcttggccctgccaccacaagccggacTCTTCTGAGCCTGGTGCCCACGCAGGAGAGTTTCTGACGTTGCGTAACAAGAGCAGCCACCCCAGGACGATCCGAGTT s panTro1.chr6 160948579 1136 - 161576975 CCTGCCATGGGCCCAGGGCCTCGAGGAGGGGTAAGGCGGGCTGCTTCCAGGGAGCCTGCTGCCAGGCGGATGTGC---------GGTGGGGGAGGTGGGGGCGGCGACCAGGGCATC--TGTTTCGTTTTTTTAAAGACAGGAGAAAGAATGGCCTGGACCGTGCAGTGGGGAAGGGAGATGCCCTGTGCAGTCCTGGGGAGGCGAGAGGGCTGGGGCTGCAGGCTGAGCTAGTGCACAGGGGCACTGGTCTCCTCGGCCTAGAGCAAGGTCCTGAGGACGAGTGAGGCCGAGGCTGAGAGTAGGAGAAGCTCAGAAGTCGGGTTGATGGTGCATAGTGCAGGACAGGAGAGCTGGGAGGGCGTAGGCAGGGCTGGGATTTGCCAGGGAGTGTGGGGAGCTGGGGGCGTCGCGTGGATCTGGCAGGACGGGCTGTCCCAGCGAGGCCTGCACGTGAGCTGCTGTCCTCCTTGTAAACAATTTCCAATTGGTCTCCAATTCACAGCTTCTTTCCGTGACCTGGAGAGAGCACAGGCCCCGCCGAGGATCAATGGGCTCTGGGGCTCCCTCACTGGCTGACAACCTGATTCCATGACTCCAGGcaggggctcccgacatgggctccaaggccctcggggtccccaggacccttcagagggtctgtgagtcaaagccaGGTATGTGGTCGCACGCAGAGCATGCCCGGCCTGCCCGTCACTGTGCTCACACCTGCGCAGATGCGGGAGCAGCTGAGGCCCACGCCCCCTGCCAC---------------------------------ACTCACCCTCACGCACACGGCTTCCACCTGCGAGTGGGCACCAGGTGCACCGCTTCACACGGAGGACCAGGGTCGTGCAGCAGAGCTGCTTTTCCCAGGAAGAATGGCGGACGGACGGGCAGTGCACCCACCCtggctgtgcggacgcgggatctggcagagcacggtgtgaaagtgaacggcccgagtccctcactcccagaacaaccgacagggtttgtggccgaggatacaagtcaagctctcacacaaaaaatcacaatgagccaaagcttggccctgccaccacaagccggacTCTTCTGAGCCTGGTGCCCACGCAGGAGAGTTTCTGACGTTGCGTAGCAAGAGCAGCCACCCCAGGACGATCCGAGTT a score=2978.0 s hg17.chr7_random 519269 33 + 778964 ACTCACCCTCGAGCACACGGCTTCACCTGCCAC s panTro1.chr6_random 29084674 33 - 67355074 ACTCACCCTAGAGCACACGGCTTCACCTGCCAC a score=3699.0 s hg17.chr7_random 519678 23 + 778964 TCTGATGCCGCCGGAGGGGAGGT s panTro1.chr6 160949715 23 - 161576975 TCTGATGCCGCCGGAGGGGAGGT s rn3.chr4 2009357 23 - 187371129 TCTGATGCTGTGCAGTGGGCGGC a score=35423.0 s hg17.chr7_random 519701 370 + 778964 GGCCACGCCAGGAAGATCGAGT-TTCTGACGTTGTGTGAGGGGACGCGGCCACGCCAGGAAGGTCCGAGT-TTCTGATGCCGCCGGATGGGAGGTGGCCATGGCAGGAAGA-CCGAGT-TTCTGACGCTGCGTGACGGGAGGCGGCCACGCCAGGAAGAT-CGAGT-TTCTGACGCTGCGTGACGGGAGGC--GGCCACGCCAGGAAGATC-GAGT-TTCTGACGCTGCGTGACGGGAGGCGGCCACGCCAGGAAGATC-GAGT-TTCTGACGCTGCGTGACGGGAGGCGGCCACGCCAGGAATAT-CGAGT-TTCTGACGCTGCGTAACGGGACGCGGCCACGCCGGGAAGA--TCCGAGT-TTCTGACGCCGCGTGACGGGAGGC s panTro1.chr6_random 29085106 375 - 67355074 GGCCACGCCAGGAAGATCGAGT-TTCTGACGCTGCGTGTGGGGACGCGGCCACACCAGGAAGATCCGAGT-TCCTGACGCTGCGTGACGGGACGCGGCCACACCAGGAAGATCCGAGT-TCCTGACGCTGCGTGACGGGACGCGGCCACACCAGGAAGATGCGAGT-TTCTGACGCTGCATGACGGGAGGC--GGCCACACCAGGAAGATCCGAGT-TTCTGACGCTGTGTGAGGGGACGCGGCCACGCCAGGAAGGTCCGAGT-TTCTGATGCCGCCGGATGGGAGGCGGCCACACCAGGAAGATGCGAGT-TTCTGACGCTGCATGACGGGAGGCGGCCACACCAGGAAGA--TCCGAGT-TCCTGACGCTGCGTGACGGGACGC s rn3.chr4 2009380 362 - 187371129 -GGCTTGGAGGGAAGTACTAGTGCTCTGATGCTGTGCAGTGG---GCGGCTTGG--AGGGAAGTACTAGTGCTCTGATGCTGTGCAGTGGGCGG----CTTGGAGGGAAGT-ACTAGTGCTCTGATGCTGTGCAGTGGGCGGCGGCTTGG--AGGGAAGTACTAGTGCTCTGATGCTGTGCAGTGGGCGGCTTGG-------AGGGAAGTACTAGTGCTCTGATGCTGTGCAGTGGGCGGCGGCTTGG--AGGGAAGTACTAGTGCTCTGATGCTGTGCAGTGGGCGGCGGCTTGG--AGGGAAGTACTAGTGCTCTGATGCTGTGCAGTGGGCGGCGGCT-TGGAGGGAAGAAGTACTAGTGCTCTGATGCTGTGCAGTGGGCGGC a score=32922.0 s hg17.chr7_random 520071 397 + 778964 GGCCACACCAGGAAGATGCGAGT-TTCTGACGCCGCGTGACGGGACGCGGCCACGCCGGGAAGATCCGAGT-TTCTGACGCCGCGTGACGGGAGGC--GGCCACACCAGGAAGATGCGAGT-TTCTGACGCCGCGTGAGGGGAGGCGGCCACGCCGGGAAGATGCGAGT-TTCTGACGCCGCGTGACGGGAGGCGGCCACGCCGCGAAGAGCCGAGTTTCTGACGCCGCGTGACGGGAGGCGGCCACGCCAGGAAGA--TCCGAGT-TTCTGATGCCGCGTGTCGGGAGGTGGCCACGCCGCGAAGATCCGAGTTTCTGACGCCGCGCGACGGGAGGCGGCCACGCCAGGAAGATCCGAGT-TTCTGACGCCGCGTGTCGGGAGGCGGCCACGCCGCGAAGATCCGA s panTro1.chr6 160949738 397 - 161576975 GGCCACACCAGGAAGATCCGAGT-CTCTGACGCTGTGTGAGGGGACGCGGCCACGCCAGGAAGGTCCGAGT-TTCTGATGCCGCCGGAGGGGAGGT--GGCCACACCAGGAAGATCCGAGT-TTCTGACGCTGCGTGTGGGGACGCGGCCACACCAGGAAGATGCGAGT-TTCTGACGCTGCGTGTGGGGACGCGGCCACACCAGGAAGATCCGAGTTTCTGACGCTGCGTGTGGGGACGCAGCCACACCAGGAAGA--TGCGAGT-TTCTGACGCTGCATGACGGGAGGCGGCCACGCCAGGAAGATCCGAGTTTCTGACGCTGCGTGTGGGGACGCGGCCACACCAGGAAGATGCGAGT-TTCTGACGCTGCGTGTGGGGACGCGGCCACACCAGGAAGATCCGA s rn3.chr4 2009744 368 - 187371129 GG-------AGGGAAGCACTAGTGCTCTGATGCTGTGCAGTGGGCGGCGGCTTGG--AGGGAAGTACTAGTGCTCTGATGCTGTGCAGTGTGTGGCTTGG-------AGGGAAGTACTAGTGCTCTGATGCTGTGCAGTGG---GCGGCTTGG--AGGGAAGTACTAGTGCTCTGATGCTGTGCAGTGG---GCGGCT-TGGAGGGAAGTACTAGTGCTCTGATACTGTGCAGTGGGCGGCT----TGGAGGGAAGAAGTACTAGTGCTCTGATGCTGTGCAGTGGGCGGCGGCT-TGGAGGGAAGTACTAGTGCTCTGATGCTGTGCAGTGG---GCGGCTTGG--AGGGAAGTACTAGTGCTCTGATGCTGTGCAGTGG---GCGGCT-TGGAGGGAAGTACTAG a score=681.0 s hg17.chr7_random 520468 18 + 778964 GTTTCTGACGCTGCGCGA s rn3.chr4 2010112 18 - 187371129 TGCTCTGATGCTGTGCAG a score=943.0 s hg17.chr7_random 520486 8 + 778964 CGGGAGGC s panTro1.chr6_random 29085849 8 - 67355074 GGGGACGC s rn3.chr4 2010130 8 - 187371129 TGGGCGGC a score=8667.0 s hg17.chr7_random 520494 90 + 778964 GGCCACACCAGGAAGATCCGACATCGCATAACCGGATGTAGCCACGCCGGGAAACCGGACGCAGCTGCGCGGGGAAGGTCTAAGTATTTT s panTro1.chr6_random 29085857 90 - 67355074 GGCCACACCAGGAAGATCCGACATCGCATAACCGGATGTAGCCACGCCGGGAAACCGGACGCAGCTGCGCGGGGAAGGTCTAAGTATTTT a score=116537.0 s hg17.chr7_random 520584 1299 + 778964 CCAAAGGAGGCAAAAGGCAAAGTCAGCACATCCAGGCCCaaagcttccacacagcaaagggaagaatgagcagagtacagccgcagggacagcccgcgggtacgggatgggagactgtatcttagaaccgccgcctgacaaggattaatcactggaatatatgaggagctcaggctcaatagcagacaatctaataatccaattaaaaatgggtaaaagacctgaacagacagctctcaaaagacagcatggaaatgacaaacaggcgtctgaaaaggtgcccaccaccaccgctcctcagagaaatgcacatagaaacaagtgagacatcctctgaccccagttaaaatggctgcggaaacaagtcccggcgcggatgtggagacaagggaaccctcacgctgctggtgggaatgtaaatgagcaccgctgggagaacagtctggaggtccctccaaaactaaaaatagagccccatacagcccggcaatcccacttctgggcaaatacccaaaagagaggaattcagctatgggggagagctgcacgcgcacgccgaatgccccactgttccgacagccaaggtgtggaagcaaccggggtgtccacggacagatgaagggagaaggaaaacgtggagcgcacgcagtggaatattatccggccacaaaagaaatgagatccagtcattggatcaacatggagggaagtggaggtcgctatgttaagtgaaataagtcaggcacagaagggcaaattccgcacattctcatttgtgggaactaaaaataaaaataattcaactcatggagatagagcagaaggatggctcccagaggctcggaagaggaatggggccgggggaagaggtggggatggttaatgagtacaaaaacagaatgagtaagatttagtatttgatagcacaacagggtgactatggtcaacaataatttatcacacatttaaacataacgaaaagtatcactgaattatttgtaacacaaagaaagtgtaagtgtttgaagtgacggggaccccatttccccaatgtgatttacacacactgcatgcctgtatcacagtatcacacatgccttatatacaccta-tgtgtacccacaaaaattaaaaaTACAAATTTTATTAAAAAAAAGAACAACGTCATTATATTCACCAACAACaaaacaaaacaaaaaaaaaaaaaagaaaaaaaaaaGCAAATCGTTAcattccaagtgtgagatggaccagcggattttaatgcactgagcgtggaaggctctgtggtgtgtggcct s panTro1.chr6 160950203 1294 - 161576975 CCAAAGGAGGCAAAAGGCAAAGTCAGCACATCCAGGCCCaaagcttccacacagcaaagggaagaatgagcagagtacagccgcagggacagcccgcaggtgcgggatgggagact--atcttagaaccgccgcctgacaaggattaatcactggaatatatgaggagctcaggctccatagcagacaatctaataatccaattaaaaatgggtaaaagacctgaacagacagctctcaaaagacagcatggaaatgacaaacaggcgtctgaaaaggtgcccaccaccgccgctcctcagagaaacgcacatagaaacaagtgagacgtcctctgaccccagttaaaatggctgcagaaacaagtcccggcgcggatgtggagacaagggaacc-tcacgctgctggtgggaatgtaaatgagccccgctcggagaacagtctggaggtccctccaaaactaaaaatagagccccatacagcccggcaatcccacttctgggcaaatacccaaaagagaggaattcagctatgggggagagctgcacgcgcacgccgaatgccccactgttccgacagccaaggtgtggaagcaaccggggtgtccacggacagatgaacggagaaggaaaacgtggcgcgcacgcagtggaatattatccggccacaaaagaaatgagatccagtcattggatcaacatggagggaagtggaggtcgctatgttaactgaactaagtcaggcacagaagggcaaattccgcacattctcatttgtgggaactaaaactaaacgtaattcaactcatggagatagagcagaaggatggctcccagaggctcggaagaggaatggggccgggggaagaggtggggatggttaatgagtacaaaaacagaatgaataagatttagtatttgatagcacaacagggtgactatggtcaacaataatttatcacacatttaaacataacgaaaagtatcactgaattatttgtaacacaaagaaagggtaagtgtttgaagtgacggggaccccatttccccaatgtgatttacacacactgcatgcctgtatcacagcatcacacatgccttatatacacctactgtgtacccacaaaaattaaaaaTACAAATTTTATTTAAAAAAAGAGCAAAGTCATTATATTAACCAACAACaaaacaaaa---aaaaaaaaagaaaaaaaaaaaaaGCAAATCATTAcattccaagtgtgagatggaccaggggattttaatgcactgagcgtggaaggctctgtggtgtgtggcct a score=68579.0 s hg17.chr7_random 521883 571 + 778964 caggccctgtgctgtgagtgaccttcaagggacggcc-tgtgtcgctgttggcgtggtattgaagaagtcccacgcctatctgaaaaggctactaaaatactcttct-tttgtccaactacacttgaagccacaggcgaggccagattattttccacgtatttcagccagagccatacacatcatgactgactgtatg--gaagatgtgaaagtccagt-gtcttccatcaagctacacatttaagacatttgcaaaa--atcgttcttgcagatgattttgttttggaaagtatttttcaaaaacacaagccatctgtgtcaatatatactgggcttactattgttattttaaacaac-taacaagtattctagaatactctcagttttgatttctgttagaggaaatgtcagcagctatcaccacaaagacagccgctctcagggtttgccaagaactcaagagtgtGCCAGGCCGGAGCTGAGGCCCCTCCTG-TGCCCCAGGGCCCTGTGGCCGGTCACACGGCTCAGCTACAGATGCCCGTGG-CAGGCGCCGAAAGCAGGCATCGGAACGAAGGC s panTro1.chr6 160951497 567 - 161576975 caggccctgtgctgtgagtgaccttcaagggacggcc-tgtgtcgctgttggcgtggtattgaagaagtcccacgcctatctgaaaaggctactaaaatactcttct-tttgtccaactacacctgaagccacaggcgaggccagattattttccacatatttcagccagagccatacacatcatgactgactgtatg--gaagatgtgaaagtccagt-gtcttccatcaagctacacatttaagacatttgcaaaa--attgttcttgcagatgattttgttttgtaaagtatttttcaaaaacacaagtcatctgtgtcaatatatactgggcttactattgttattttaaacaac-----aagtattctagaatactctcaattttgatttctgttagaggaaatgtcagcagctatcaccacaaagacagccgctctcagggcttgccaagaactcaagagtgtGCCAGGCTGGAGCTGAGGCCCCTCCTG-TGCCCCAGGGCCCTGTGGCCGGTCACACGGCTCAGCTACAGATGCCCGTGG-CAGGCGCTGAAAGCAGGCATCGGAATGAAGGC s canFam1.chrUn 89114043 523 - 91062872 CAGGGTCCACCCTCTGGGTGGCCTCCGGggaacgaccgcctatccagtttggggcagtatcaaagcacacccgcagttatctgaaacagctcct------ctcttccagctgtgtacctgcc--------------cgaggctggatttccttc--attaccttacccaacacc--acctatcatggctgacagaatgcagaagctgtgaacacctagcagtctgccatcgagagtcaca---aaaaggtaaacaacgccactcttcttgctccttattttgttttggaaaagatctctcttaaaaccatgttatttatgttaatatacaacgaac------ttgttaccctaaccaagttaataaatatccaagatttttctcaacttcaatttct-----agcaaataacacaggctgtaacctagaaggacaaaacccttgggACT----GATAGTTCAAGGGCTCCCGAGGCCGTGGAT----------CTGCTGCCCCA------TGAGACCAATCATGCTACTCAGCTGCCAAGAGCCGGGTCCATGCACTCAAGGCAGGTTTCAGAACCAACCA a score=-557.0 s hg17.chr7_random 522454 14 + 778964 -----CAAGCCGTCGGAGT s panTro1.chr6 160952064 14 - 161576975 -----CAAGCCGTCGGAGT s rn3.chr12 15988207 13 + 46649226 -----CAGACCCT-GGAGA s canFam1.chrUn 89114566 14 - 91062872 CATGTCACACCACA----- a score=103190.0 s hg17.chr7_random 522468 230 + 778964 CTCACCTAAAATTGCATCCTGGATGGCCCTCTCTGGATCGTCAAGGTGAACC-AGCAACTCTCGGTACAGGTACTGGACACTGCTCTGATAGTAGGATTTT-GCGTTGGCACCCTTGACACACTGCAGCCAGGTGACCAA-GGTGGAGGCGGCTGCCATCCT----------------------------------------------------------------------------------------------------CACATCGTTGGACACGTCATCTAGGCGTTTTAAGAGTTCTGGAAGGAGGGAGCGAGACAGGTGTGTGAGTC s panTro1.chr6 160952078 327 - 161576975 CTCACCTAAAATTGCATCCTGGATGGCCCTCTCTGGATCGTCAAGGTGAACCCAGCA-CTCTCGGTACAGGTACTGGACACTGCTCTGATAGTAGGATTTTTGCGTTGGCACCCTTGACACACTGCAGCCCAGTGACCAAAGGTGGAGC--GCTGCCATCCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACATCGT-GGAAACGTCATCTAGGCGTTT--AGAGTTTCTGAAGGAGGGAGCGAGACAGGTGTGTGAGTC s mm5.chr5 12628932 227 - 149219885 CTTACCTAGGACGGTGTCTTGAATGGCACTCTCTGGGTCATCCAGGTGGACC-AGCAGCTCCCGGTACAGGAACTGAACGCTGCTCTGATAGGCGGACTTC-CCATCCAAGCTCTCGATGCACTTGAGCCAGGTGAGCAA-GGCAGAAGCAGCTGCCATCCT----------------------------------------------------------------------------------------------------CACATCATTGGAGACATCATCTAGGCGCTTCAAGAGCTCTGTGGGGAGTGGGAG---TAGGCATGAGGGCC s rn3.chr12 15988221 225 + 46649226 CTCACCTAGCACAGTGTCTTGGATGGCACTTTCTGGGTCATCCAGGTGGACC-AGCAGCTCCCTGTACAGGAACTGAACGCTGCTCTGATAGGCGGATTTC-CCATCCACGCTCTCAATGCACTTCAGCCAGGTGAGCAA-GGCGGAAGCAGCTGCCATTCT----------------------------------------------------------------------------------------------------CACGTCATTGGAGACATCATCTAGGCGCTTCAAGAGCTCTGTGGGAGGAGAG-----TAGGCATGAGGGCC s canFam1.chrUn 89114580 228 - 91062872 CCTACCTAACACCGCATCCTGGACAGCGCTCTCCGGGTCATCGAGGTACACA-AGGAGCTCTCTGTACAGGAACTGAATGTTGCTTTGGTAGTAGGACTTC-CCATCATCATTCTTGATACACGCCAGCCATGTGACCAA-GGCAGAGGTGGCAGCTAGCCT----------------------------------------------------------------------------------------------------CACTTCATGGGAAACGTCGTCCAGACGCTTCAGGAGCTCTAGAGGGAGGGCCAGA--CAGGACAGTGAGAC a score=0.0 s hg17.chr7_random 522698 3 + 778964 TAG a score=836.0 s hg17.chr7_random 522698 3 + 778964 TAG s panTro1.chr6 160952405 3 - 161576975 TAG s mm5.chr5 12629159 3 - 149219885 AAG s rn3.chr12 15988446 3 + 46649226 AAG a score=185.0 s hg17.chr7_random 522701 9 + 778964 A-GCAGACAT s panTro1.chr6 160952408 9 - 161576975 A-GCAGACAT s mm5.chr5 12629162 10 - 149219885 GTGCAAACGT s canFam1.chrUn 89114808 9 - 91062872 -AGCGACCAG a score=235.0 s hg17.chr7_random 522701 14 + 778964 AGCAGACATTTCAC s canFam1.chrUn 89114808 14 - 91062872 AGCGACCAGTGCAG a score=559.0 s hg17.chr7_random 522710 5 + 778964 TTCAC s panTro1.chr6 160952417 5 - 161576975 TTCAC s canFam1.chrUn 89114817 5 - 91062872 TGCAG a score=9149.0 s hg17.chr7_random 522715 85 + 778964 GTCTAAACGTCCACAAAGGCATTTAGTTCATACTCCCATGGGACACCTGCCCTGGGGTCCTAAGAAACCCACACCTCACGGGAGA s panTro1.chr6 160952422 85 - 161576975 GTCTAAACATCCACAAAGGCATATAGTTCACACTCCCATGGGACACGTGCCCTGGGGTCCTAGGAAACCCACACCTCACGGGAGA s rn3.chr12 15988449 55 + 46649226 GTGCAAATGTGGA---------------------------GGGCCTTTGCTCTGGGGGCCCAAGAATC---CACCTCTCAGAAGA s canFam1.chrUn 89114822 63 - 91062872 ----GGACTGACCCAGAG------------------CTGGGGGCACTCACCCTTGGGCCCTGGGAACCCCATGTCCTGTGGGGAG a score=3807.0 s hg17.chr7_random 522800 47 + 778964 CTCCGTGCATCCCGAGCCACATGCAAGGTGCTCCTGGCGA--CCTGGGA s panTro1.chr6 160952507 47 - 161576975 CTCCGTGCATCTCGAGCCACGTGCAAGGTGTTCCTGGCGA--CCTGGGA s canFam1.chrUn 89114885 41 - 91062872 ACTAGTGC--------TCACACTCAAGGGCCTGGGGGCAGCTCCCAGGA a score=13681.0 s hg17.chr7_random 522847 159 + 778964 CCCCTGAACCCCAGCCAACAGAGTGGAGGCGGCCCAGGCCCTGCTGCGGCCCCTGTAATAACCTGTCCTGCAGGCGCAGAGCCTCCCTGTA--GCTGTAGCTGTGTGCTCACCTGGTCCTCCACCTCCTCGCAGCTGTGTGCTCACCTG-------GCCCTCCACCTC s panTro1.chr6 160952554 159 - 161576975 CCCCTGAACCCCAGCCAACAGAGTGGAGGCGGCCCAGGCCCTGCTGCGGCCCCTGTAATAACCTGTCCTGCAGGCGCAGAGCCTCCCTGTA--GCTGTAGCTGTGTGCTCACCTGGTCCTCCACCTCCTCGCAGATGTGTGCTCACCTG-------GCCCTCCACCTC s canFam1.chrUn 89114926 121 - 91062872 CCACTGGACCACA----------------CTGGCCAGGGCAGGCGGAGG--------AGAACCTGGC--------------CCTCCTTGT---------GCCGTATGTGCAGGCAGGCCTGAGCTGCTCTGTACCTGTCTCCTCACCTGCAAGGCAGCCCCAGGCCTC s fr1.chrUn 28827584 149 - 349519338 CCTCCACACACCTGACTCCATGGTGGAACCGGGACCGGGACCCAGCAGGGTCCTGAGGTTCTTTCACCT------------CATCCTTGGAATGTTTGAGCTGGAGCCCCGGAACGACCTTCATCCTTTCCCTTCTGCGTGCTCATCCG-------TGCATCCACCTC a score=40291.0 s hg17.chr7_random 523006 368 + 778964 --CTGCTCCCAGATGCTCAGA--------TCCCCGAG---------CTGGCCACCCTGCCCAGCT------CTGACCCTGCCCT--CCCACC-------------------AGAGCTGAGGACTCAGTGAC---AGACAACCCCCTACTGTGGTCAGTTT-------------------------TCTGCTGCTGAAAACAGAAGGATGATCCTTCCCGATGGGTAGAAACTTATGAGGTTAATGGACATAATTTTTATCAAATTTATGCTTTTTTTACATCATCTTAAAAAAA--CTTTGGCACCCCCTTCTGTGCAGCATCCGGAAATTCGCAGATGACTGAGTCGCAAAA----CCACCCGGAGGCCCATCTTCCCGACGCTGGGAGGGGCAGCTGCCCATGCCTGGCATGAGGCCCATCTTCCCGACGCTGGGAGGGGCGGCTG s panTro1.chr6 160952713 365 - 161576975 --CTGCTCCCAGATGCTCAGA--------TCCCCGAG---------CTGGCCACCCTGCCCAGCT------CTGACCCTGCCCT--CCCACC-------------------AGAGCTGAGGACTCAGTGAC---AGAAAACCCCCTACTGTGGTCAGTTT-------------------------TGTGCTGCTGAAAACAGAAGGATGATCCTTCCCGATGGGTAGAAACTTATGAGGTTAATGGACAT---TTTTATCAAATTTATGCTTTTTTTACATCATCTTAAAAAAA--CTTTGGCACTCCCTTCTGTGCAGCATCCGGAAATTCGCAGATGACTGAGTCGCAAAA----CCACCCGGAGGCCCATCTTCCCGACGCTGGGAGGGGCAGCTGCCCATGCCTGGCATGAGGCCCATCTTCCCGACGCTGGGAGGGGCGGCTG s canFam1.chrUn 89115047 438 - 91062872 TGTGGCTCCGAGATGCTCAAGAGTCTGTCACCACAAGCATCACACCCTGGCTGTCCTGTCCCCTTGATGGGCAGACCCTTCTCTACCCCAACACACTGCGCACTCTGGGGAAGAGCTCAGGGCCTGATGATGAGAGCCAACACCTGTGTCTGGTTTGTTTCTGCTGAGTTCTGGGGCTGGACCACTTGGCTGCTGAACGCAGTA--ACCATTTCTCCTG-TGGGTAGAAACTCAC--TGTTCACAGGTGAGGTTTTTATCAAACATATACCTTTCTCACCCCAAAGTACAAGAAATCTCTGGC-CCTGTGGCTGGGT-GTCTCTGGAGACTCAGCAGTCACTGGGGCACAGAATGAGCAGGCAGGAGGTGGATGTT---GGTGGGGAGCAGGGCAGTGGCCCCACAATGGCAGGCGGCCTATCCACCAGACGTAGGTATGCAGGGCCG a score=20709.0 s hg17.chr7_random 523374 219 + 778964 CCCGCGCCTGGCACCAGGCCCATCTTCCCGCTGCAGACGCGAGGGTGGGCTGGGTCTCTGATGCTTTTGCAATGTGGAGGGCATGATCCACCCTCAGCAAGAGGATCCTATGTAACGAAAGGCATGAAAAACATCCAAAGTTCAGGCCATCCTACCAAGCCAGGCTTTGAGACAAGTGGGACCCAGTGGGTTAATTCCTGGCAGATGCCCAGGCACTTC s panTro1.chr6 160953078 219 - 161576975 CCCGCGCCTGGCACCAGGCCCATCTTCCCGCTGCAGACGCGAGGGTGGGCTGGGTCTCTGCTGCTTTTGCAATGTGGAGGGCATGATCCACCCTCAGCAAGAGGATCCTATGTAACGAAAGGCATGAAAAACATCCAAAGTTCAGGCCATCCTACCAAGCCAGGCTTTGAGACAAGTGGGACCCAGTGGGTTAATTCCTGGCAGATGTCCAGGCACTTC a score=11530.0 s hg17.chr7_random 523593 111 + 778964 CCTGAGGGTTCTGGGCCCTG----AGGGTGCTGGGCCTTCCAGCCACCAAACACAGGCACCAAGGAGGAAGCCACGGAGCACATCCAGGCATTATGGTGCCAAACCCTGAAGCAG s panTro1.chr6 160953297 111 - 161576975 CCTGAGGGTTCTGGGCCCTG----AGGGTGCTGGGCCTTCCAGCCACCAAACACAGGCACCAAGGAGGAAGCCACGGAGCACATCCAGGCATCATGGTGCCAAACCCTGAAGCAG s fr1.chrUn 315907043 106 + 349519338 CATGAGGGGAGTGCTCCCTGCACCAGGG----GAGTGCTCCCTGCACCAGGGGAGTGCTCCCAGCATGAGG----GGAGTGC-TCCCTGCACCAGGGGAGTGCTCCCTGCACCAG a score=2346.0 s hg17.chr7_random 523704 4 + 778964 CCCT s panTro1.chr6 160953408 4 - 161576975 CCCT s rn3.chr14 91674386 4 - 112220682 CCCT s fr1.chrUn 315907258 4 + 349519338 CCCT a score=16332.0 s hg17.chr7_random 523708 84 + 778964 GCACGGCAGGTGCC--------------CTCACTGCACAGCGGGTATGCTCAC--TGCACAGCGGGAGCCCTCGCTGCATGGGGGGTGCTTTTGCTGCAT s panTro1.chr6 160953412 64 - 161576975 GCACGGCAGGTGCC----------------------------------CTCAC--TGCACAGCGGGAGCCCTCGCTGCATGGGGGGTGCTTTTGCTGCAT s mm5.chr12 113122144 84 + 115071072 GCCTGGTGGGTGCT--------------CACTATGCCTGGTGGGTG--CTCACTATGCCTGGTGGGTGCTCACTATGCTTGGTGAGTGCTTACTATGCCT s rn3.chr14 91674390 98 - 112220682 GTGCTGTAGTTGCCAGTTGTCACCTGGGCCTGCTGCATGGTGGGTAGTCCTGC--TGCATGGTGGGTAGTCCTGCTGCATGGTGGGTAGTCCTGCTGCAT s fr1.chrUn 315907262 84 + 349519338 GCACCAGGGGAGTG--------------CTCCCTGCACCAGGGGAGTGCTCCC--TGCACCAGGGGAGTGCTCCCTGCATGAGGGGAGTGCTCCCTGCAC a score=25416.0 s hg17.chr7_random 523792 87 + 778964 GGGGGGTATGCTCACTGCACGGCAGGTGCCCTCACTGCACAGGGGGTATGCTCAC--TGCACGGCGGGAGCCCTCGCTGCACAGTGGGT s panTro1.chr6 160953836 87 - 161576975 GGGGGGTATGCTCACTGCACGGCGGGAGCCCTCGCTGCACGGGGGGTATGCTCAC--TGCATGGCGGGAGCCCTCGCTGCACAGTGGGT s mm5.chr12 113122228 87 + 115071072 --GGTGGGTGCTCACTATGCCTGGTGAGTGCTCGCTATGCCTGGTGAGTGCTTACTATGTCTGATGAGCGCTTACTATGCCTGGTGGGT s rn3.chr14 91674488 87 - 112220682 GGTGGGTAGTCCTGCTGCATGGTGGGTAGTCCTGCTGCATGGTGGGTAGTCCTGC--TGCATGGTGGGTAGTCCTGCTGCATGGTGGGT s fr1.chrUn 315907346 87 + 349519338 CAGGGGAGTGCTCCCTGCATGAGGGGAGTGCTCCCTGCACCAGGGGAGTGCTCCC--TGCACCAGGGGAGTGCTCCCAGCATGAGGGGA a score=2238.0 s hg17.chr7_random 523879 11 + 778964 GCCCTCGCTGC s panTro1.chr6 160953923 11 - 161576975 GCCCTCGCTGC s mm5.chr12 113122315 11 + 115071072 GCTCACTATGC s fr1.chrUn 315907433 11 + 349519338 GTGCTCCCAGC a score=3665.0 s hg17.chr7_random 523890 35 + 778964 -------ACGTG-TCTCAGGAGGAAGGACGGAGT-CAGATGCTC s panTro1.chr6 160953934 35 - 161576975 -------ACGTG-TCTCAGGAGGAAGGACGGAGT-CAGATGCTC s fr1.chrUn 315907444 41 + 349519338 ATGAGGGGAGTGCTCCCAGCATGAGG---GGAGTGCTGATGTTC a score=12785.0 s hg17.chr7_random 523925 137 + 778964 AACTCACCCAAGCTTGTCCCGCTAGCAAACATCTATGGGCCCGGACAGGATCCTCCGAGGCCTCCTGCTGGCGCGGTCGACTATGGAAGTACACAGAGTGGCACTGGCTATTGTGTTTTTACGATGGTCACTCCCTG s panTro1.chr6 160953969 137 - 161576975 AACTCACCCAAGCTTGTCCCGCTAGCAAACATCTATGGGCCCGGACAGGATCCTCCGAGGCCTCCCGCTGGCGCGGTCGACTATGGAAGTGCACAGAGTGGCATTGGCTATTGTGTTTTTACGATGGTCACTCCCTG a score=60095.0 s hg17.chr7_random 524062 466 + 778964 GATGGCCTGCAGGTCCACTTTTGTACCAGTTTAGGGTTC-CTTTCATGCACGA---CTAAGCCAGGCAGAATCGGCTCACGCTGGCCTGTCTGCTGTTCATGTTTGTGTCTGTCTGTCCTGGGAGGCCTGGATGTCTGTGCTCCCAACTCAGGACATCCTTCCTTCCCCA-CCAAGGAGGCCATGATTCATCCAACACTTCACCCTGGGAAGCCCAGAGCTGGCACTA-ATAGGCAAGGGGCCT-CTCAAGGAA--CCTTTTGTAGTGAAAATAAACAGGGGGCCGTGGCCCAGATGCCCAAATGCGCTCAGATGCCCAAACGCGTGCAGCCTTTCCGCCAGCTCCTGTTTTAAAAAGTGAGTGAATTCCCAA-----------------CAATCGCA-TGGACTGAACTTGTTC-CAGA-GTCAGTGGGAACAGGATGTTTGTTACTAAAGAA-TAAAAACAGA---AAA-GCAAAGGTGAGAGAATGAGTGACAAAGG s panTro1.chr6 160954106 467 - 161576975 GATGGCCTGCAGGTCCACTTTTGTACCAGTTTAGGGTTC-CTTTCATGCACGA---CTAAGCCAGGCAGAATCGGCTCATGCTGGCCTGTCTGCTGTTCATGTTTGTGTCTGTCTGTCCTGGGAGGCCTGGGTGTCTGTGTTCCCAACTCAGGACATCCTTCCTTCCCCA-CCAAGGAGGCCACGATTCATCCAACACTTCACCCTGGGAAGCCCAGAGCTGGCACTA-ATAGGCAAGGGGCCT-CTCAAGGAA--CCTTTTGTAGTGAAAATAAACAGGGGGCCGTGGCCCAGATGCCCAAATGCGCTCAGATGCCCAAACGCGTGCAGCCTTTCCGCCAGCTCCTGTTTTAAAAAGTGAGTGAATTCCCAA-----------------CAATCGCA-TGGACTGAACTTGTTC-CAGA-GTCAGTGGGAACAGGATGTTTGTTACTAAAGAA-TAAAAACAGA---AAAAGCAAAGGTGAGAGAATGAGTGACAAAGG s canFam1.chrUn 89115766 439 - 91062872 GGTGGCTTGGAAATTCACTTTTGTGATCGTCTGAGGTCCGCCATGATGTGCAACTGCTAGTTCAGGAAGAA-------AAGATAGCTTGTATGGGGCT----------------TGTCAGGAAGGACTTAGAGG---GAG----CAGCTTAGAACGTCCTCCCCTCTGCAGCCAAGCAGGCAATGCTTCTGTAAACACATCGCTGCCAGGAGCACAGAACTGGTGCCACAAAATAAAGGAGCCTGCCCGAGGAAATCCTATTGTAATTAAAAT---------------------ATCCCCAAATGCCCCCAAATGA----------GCAACAGTTTCACTGGCTTTTGTTTTAAAAAGTGAGCAAAATCCCAATGAGTCCTGACAGGCAGCAACCACACTGGCCTGGATTTGTTCACAGATAGAAATAGGAATAAGATGTTTGGTGCCACAGAAGTAAACACAAAAGCAAAAACAAACTTGAAAGAACACATGGGAAAGG a score=143707.0 s hg17.chr7_random 524528 1555 + 778964 CCCCCGGACCTCAGAGTTCAGCAGGCGGCGGTTTTTCTGCCCAGCGCCGtgtgtactgtgaatctgaaaattcatgtctgtctccagttctggaagattctgaggcaccatctctCCTCCATTCTCTTCTCCTGGGATTCAGAAAAGCCCGGGAGCCTCTCGGCCCACTCGGCACCTCTCTCCATCCCGTGTCCTCTGCCCGCTCCAGGCCCCGCGTCCCTCCCCGTCCCGTGTCCTTCGCCCACTCCAGGCCTTGCACCCCTCTCTGTCTCGTGATCTTGAGGAATTCCACATTCCTGGCTTTCACGTCACTAACTTTGTTTTCAGCCACATTCAGTCTAGAGTTGACCCAGTACACAGAGTGTGAAGTTCCGATGACTCCATTCATTTCCGGGAATTAGCAA-GAACCATCTTTTAAAAACTGCTAAACATTTCTGGCATAAATACACAAAATATAGATAATCACATTAAGTAGAGC-TAATCAGGAACGCCTGAGTGGCCGCTTCCCGCCCACCCCATCCCCTTTCTCCCTCGCTGGGTAACTCCTTTCCTCAAAGTAGTGCCAGCACACCATTCCGTGTCACTCCGGACTTCCCAGCGATCGCTTCCGTTTCCATCTGTTCTTTATTCCTGCTTGTCTTCTTGTTTCTCAACTTGTTTTTTAGTGGATGTTGTTCTTTTAGCTTTTTGAGGATCTTAAACACGCCTCAATAAAGGTAACTTTGAGGTGGTTCTATTATCGGCACTTCCTTCCCGGGCTGGGTGCGAGGCTGCCCTTAGCGCCGGGTCTTCGGTGTTCTGAGGTagcagtccccaacctttttggcaccaggggctggtttcatggaagacaattttccatggaccagggggtgagatggtttcaggatgagtcacgtgcgttacgtttattgtacacgttatttctatgactacattgtaacatataatgagataattctacaactcatcatcctgtagaatcagtgggggcctgagcttgttttcctgcaactagacggtcccatgtggggacgatgggagacagtgacggatcatcaggcattagtttcataaggagcgtcagcttggatccctcgcgtgcacagttcacaataggatttgtgctcctatgagaatctaatgccgttgccgatctgacaggaggcagagctcaggtggtaatgcaaaagatggggagcagccgtaaacacagatgaagtttcgcttgcccacctctcacctcctgctgtgcagtctggttcctaacaggacccggacaggtactggcccatggcctgggtggcgggggcccTGTCCTGAGGGGTTTGTGTGCAGGCTGCCCTGAGTGAGGGGCTCTCTGAATTCATGACTCTGTTCAGTGCTGCTGCTTTTCGGGGGCTTCAAGCCAACCACCCCATTCCCCTCCCCAGTGCTTGCTCTCACCTGGGGTTGGTCTGGGGTTTGGGCTCCAGGAGGCGGCGACACTGAGGCTGTGCCCCTGGTCCTGCTGCAGGGTGGCCCGGCCCCGTCTCCCCACAGGCAGCTCCAGCCG s panTro1.chr6 160954573 1556 - 161576975 CCCCCGGACCTCAGAGTTCAGCAGGCGGCGGTTTTTCTGCCCAGCGCCGtgtgtactgtgaatctgaaaattcatgtctgtctccagttctggaagattctgaggcaccatctctcctccattctcttctcctgggattcAGAAAAGCCCGGGAGCCTCTCAGCCCACTCGGCACCTCTCTCCATCCCGTGTCCTCTGCCCGCTCCAGGCCCCGCGTCCCTCCCCGTCCTGTGTCCTTCGCCCACTCCAGGCCTTGCGCCCCTCTCTGTCTCATGATCTTGGGGAATTCCACATTCCTGGCTTTCACGTCACTAACTTTGTTTTCAGCCACATTCAGTCTAGAGTTGACCCAATGCACAGAGTGTGAAGTTCCGATGACTCCATTCGTTTCCGGGAATTAGCAAAGAACCATCTTTTAAAAACTGCTAAACATTTCTGGCATAAATACACAAAATATAGATAATCACATAAAGTAGAGTATAATCAGGAACGCCTGAGTGGCCGCTTCCCGCCCACCCCATCCCCTTCCTCCCTCGCTGGGTAACTCCTTTCCTCAAAGTAGCGCCAGCACACCATTCCATGTCACTCCGGACTTCCCAGTGATCGCTTCCGTTTCCATCTGTTCTTTATTCCTACTTGTCTTCTTGTTTCTCAACTTGTTTTTTAGTGGATGTTGTTCTTTTAGCTTTTTGAGGATCTTAAACACGCCTCAATAAAGGTAACTTTGAGGTGGTTCTATTATCGGCACTTCCTTCCCGGGCTGGGTGCGAGGCCGCCCTTAGCGCCGGGTCTCCGGTGTTCTGAGGcagcagtccccaacctttttggcaccaggggctggtttcatggaagacaattttccatggaccagggggtgagatggtttcaggatgagtcacgtgcgttacatttattgtacacgttatttctatgactacattgtaacatataatgagataattctacaactcatcatcctgtagaatcagtgggggcctgagcttgttttcctgcaactagacggtcccatgtggggacgatgggagacagtgacggatcatcaggcattagtttcataaggagcgtcagcctggatccctcgcgtgcacagttcacaataggatttgtgctcctatgagaatctaatgccgttgccgatctgacaggaggcagagctcaggtggtaatacgaaagatggggagcagccgtaaacacagacgaagcttcgctcgcccacctctcacctcctgctgtgcggtctggttcctaacaggacccggacaggtactggcccatggcctgggtggcgggggcccTGTCCTGAGGGGTTTGTGTGCAGGCTGCCCTGAGTGAGGGGCTCTCTGAATTCATGGCTCTGTTCAGTGCTGCTGCTTTTCGGGGGCTTCAAGCCGACCACCCCATTCCCCTCCCCAGTGCTTGCTCTCACCTGGGGTTGGTCTGGGGTTTGGGCTCCAGGAGGCGGTGACACTGAGGCTGTGCCCCTGGTCCTGCTACAGGGTGGCCCG-CCCCGTCTCCCCACAGGCAGCTCCAGCCG a score=21487.0 s hg17.chr7_random 526083 177 + 778964 CCCCACCCTGAGGTCCCCCTTCCCGGCCGCGTGGAAGCT-GAGCCTTGTCACCCCCACCCAGTGCTGGTTTGGAGACCTCTGCCTTGCTTCT--TGCTGTGCCGTTTAATTTGTGGTATTTCATCTGTCATTGCTGTTTGTTCTCATAGTACCAACTTGAACAGAAGTCAAAGATGAGCA s panTro1.chr6 160956129 178 - 161576975 CCCCACCCTGAGGGCCCCCCTCCCGGCCGCGTGGAAGCTTGAGCCTTGTCACCCCCACCCAGTGCTGGTTTGGAGACCTCTGCCTTGCTTCT--TGCTGTGCCATTTAATTTGTGGTATTTCATCTGTCATTGCTGTTTGTTCTCATAGCACGAACTTGAACAGAAGTCAAAGATGAGCA s canFam1.chrUn 89116866 159 - 91062872 CCTCACCTCAAGGGATCCCTGCCAGGTCGTG---------GGGCC---GCACTCCCA---AATCTTGG---GCACACGCCT-CCTTGTTTCTTGTGCTACACTATCTACCCATTGATGGTTCCTCTGTCATGGCTGTATTGGGATGCAGCATCAACCTGACTGGAGGTCAAAG--GAGCA a score=27523.0 s hg17.chr7_random 526260 302 + 778964 ttttctattttctttttttttt-gagatggagtctggctctgtcacccaggctggagtgcaatggtgcgatcttggctcactgcaacctccacctcctgagttgaagcgattctcttgcctcagcctcctgagtagctggaactacaggcgcgcaccaccatgtccagctaattttttt-atttttagtagagacagggtcaccattttggccaggatggtttctatctcttgactttgtgatccacctgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgtgcccggccAC s panTro1.chr6 160956307 304 - 161576975 ttttctattttttttttttttttgagatggagtctggctctgtcacccaggctggagtgcaatggtgcgatcttggctcactgcaacctccacctcctgagttgaagcgattctcttgcctcagcctcctgaatagctggaactacaggcgcgcaccaccatgtccagctaattttttttatttttagtagagacagggtcaccattttggccaggatggtttcaatctcttgactttgtgatccacctgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgtgcccggccAC a score=6133.0 s hg17.chr7_random 526562 39 + 778964 GTTTTCTGCTTTTTTTCTATAAAACAAGCCACCATCAAA s panTro1.chr6 160956611 39 - 161576975 GTTTTCTGCTTTTTTTCTATAAAACAAGCCACCATCAAA s canFam1.chrUn 89117025 36 - 91062872 GTTTCTAG---TTTCCCTATAAAAGAAACAGCCACCAGA a score=66548.0 s hg17.chr7_random 526601 821 + 778964 CTTAAATAcagtcgtcccttggtatctgtggggtttggttccaggaatcctcctcctctaggataccaaaatcctcaaatgctcaagtctctgataaaaaaaggcatagtatttgcacatgacccacacacatcttccggcacaccttaaactgtctctagattacgtttaacgctaaatgtaacatccacacgacgcttccttcacgtgggttcaacgttgtTTTAAGGCAGAACGCAACGTCCACACGACGCTTCCTTCACGAGGGTCCAATGTTGttttaaggccgaatgcaatgtgtacatgatgctttcttcatgcgggttcaacgttgtact-tggtgcccaacaaattcaagctttgctttttggaactgtggaattctGCCCCCCAatacatacatatttatatatgcaaatgtaagtacaaatttgtatttgtatgtataaatgcacaaacatgtatatatgtaGCcatacacacacacacacacacacacacacac----CCCTACTTTTAAAGACAAGGTTTTGGTCTGTTGCCCAGGctgggctcaagcgatcctcctgcctcagcttcctgagtagctgggactacaggtgtgtgccaccagccctggctaatttttaaattttttgttgagatcggggtatggctatgttgcccaggctggtctcaaattcctgggctcaagcaaccctcctgcctaaagtgctggaattaaaggtgtgaaccaccacacccagccCGAGatagttttgatctgagtttgggtgactccatggatgcaaacggaacccagggacacggagggctgactgCAT s panTro1.chr6 160956650 769 - 161576975 CTTAAATAcagtcgtcccttggtatctgtggggtttggttccaggaatccccc-cctctaggataccaaaatcctcaaatgctcaagtctctgataaaaaaaggcgtagtatttgcacatgacccacacacaccttccggcacaccttaaactgtctctagattacgtttaacgctaaatataac--------------------------------------------------------gtccacacgacgcttccttcatgcgggttcaacgttgttttaaggccgaatgcgacatgtacacgatgctttcttcatgcgggttcaacgttgtactctggtgctcaacaaattcaagctttgctttttggaactgtggaattctGCCCCCCAatacatacatatttatatatgcaaatgtaagtacaaatttgtatttgtaggtataaatgcacaaacatgtatatatgtaGCcatacacacacacacacacacacacacacacacacTCCTACTTTTAAAGACAAGGTTTTGGTCTGTTGCCCAGGctgggctcaagcgatcctcctgcctcagcttcctgagtagctgggactacaggtgtgtgccaccagccctggctaatttttaaattttttgttgagatcggggtatggctatgttgcccaggctggtctcaaattcctgggctcaagcaaccctcctgcctgaagtgctggaattaaaggtgtgaatcaccacacccagccCGAGatagttttgatctgaggttgggtgactccatggatgcaaacggaacccagggacacgaagggctgactgCAT a score=2769.0 s hg17.chr7_random 527422 23 + 778964 ATACACAGGCTGTGAACAACAGA s panTro1.chr6 160957419 23 - 161576975 ATACACAGGCTGTGAACAACAGA s canFam1.chrUn 89117068 23 - 91062872 ACACATGAGGTTTAGGAAAGAAA a score=-805.0 s hg17.chr7_random 527445 2 + 778964 -AA s panTro1.chr6 160957442 2 - 161576975 -AA s rn3.chr12 15991656 2 + 46649226 -AG s canFam1.chrUn 89117091 2 - 91062872 GA- a score=102390.0 s hg17.chr7_random 527447 179 + 778964 TGTCCTACCAGGATAAATCCTGATGAGTTTCTCTGGATCCGTCATGCCGCCCGAGGTTTTTAAGAACGTGTTGATAATACGGCATGAGATCAGTCGCGTCATCTTCGAATCCTCCTCCAGGGTGGTCAGGACCTGGGGCATCAGTGTTTCCTGCACGTCCCGTATCTGCAATCAGCAAA s panTro1.chr6 160957444 179 - 161576975 TGTCCTACCAGGATAAATCTTGATGAGTTTCTCTGGATCCGTCATGCCGCCCGAGGTTTTTAAGAACGTGTTGATAATACGGCACGAGATCAGTCGCGTCATCTTCGAATCCTCCTCCAGGGTGGTCAGGACCTGGGGCATCAGTGTTTCCTGCACGTCCCGTATCTGCAATCAGCAAA s mm5.chr5 12632075 179 - 149219885 TGTCTTACCAGGATAGACCTTGAGGAATTTCTCTGGCTCCATGGTGTCCCCTGAATTCTTGAGGAACATGTTGATGATGCGGCAGGACATCAGGCGTGTGGTCTGGGAGTCGTCCTCCAGCGTAGCCAGCACTTGTGGCATCAGGGTCTCTTGTGCCTCTTGCACCTGCAGGCCACAAA s rn3.chr12 15991658 179 + 46649226 CGTCTCACCAGGATAGACCTTGAGAAATTTCTCTGGCTCCATGGTATCCCCTGAGTTCTTGAGGAACCTGCTGATGATACGGCAGGAGATCAGGCGTGTGGTCTGGGAGTCGTCCTCCAGCGTGGCCAGCACTTGTGGCATCAGGGTCTCCTGTGCCTCTTGAACCTGCAAGTCACAAA s canFam1.chrUn 89117093 179 - 91062872 TGTCCTACCAGGGTAAATCCTGATGAACTTATCAGGATCAATGATGCCACTGGAGGATTTTAGAAATCTGTTAATGATCTGGCACGAAATTAATCGAGTCATCTGAGAATCTTCCTCCAGGGTGGTTAGAATATGCGGCATCAGTGTCTCCTGCACTTGCTGTATCTGCAATGAGAAGA a score=470.0 s hg17.chr7_random 527626 9 + 778964 CACATACGA s panTro1.chr6 160957623 9 - 161576975 CACATACGA s mm5.chr5 12632254 9 - 149219885 TGGGTGTGA s canFam1.chrUn 89117272 9 - 91062872 CAAGAGGGG a score=2573.0 s hg17.chr7_random 527635 20 + 778964 --CGTGACTCACATCTGTCCTG s panTro1.chr6 160957632 20 - 161576975 --CGTGACTCACATCTGTCCTG s canFam1.chrUn 89117281 22 - 91062872 CTGGTGACGGACCCCAGCCCAG a score=7130.0 s hg17.chr7_random 527655 74 + 778964 GGGTGGGGTGGGGGTGCTCACCATCCGTGCACTCCTGCCTGGAAGGACTTAGGGGGCTTGAAAGCTTTACCTAA s panTro1.chr6 160957652 74 - 161576975 GGGTGGGGTGGGGGTGCTCACCATCCGTGCACTCCTGCCTGGAAGGACTTAGGGGGCTTGAAAGCTTTACCTAA a score=59544.0 s hg17.chr7_random 527729 684 + 778964 AAAGTAGGCTTGAATCTTCA-TTGTAAAATTTAGAT--TTTGAGCAATTTTTAACTTGCTT-ACTTGATTTTTAGAAAATACGCACACTGTTCACAACTCCTAGGTGAGGCACTAACCCTAAA-----------CCAGGGTAATGGC--TCGCCTGGGCCCCAAGGA---CGTGGGGCTTTCGGCTGGAGCACCGACCGCACCACCCCGCGTGCACCAGGAGGTGGCGC-TGATGCTGCACGGGCGCCCAGGGCAGCGCCTTCCC--------GCCGGGCGGCGACCAGGACGCGGGCGGGCATCAGTGTCTGTTTTCTGACACCTGGTACCAGCCGGAGGTGTTCATAGAAACGATGCGGAAAGCCCAG-GCCCGTCC--TCTGGCCTGGATCCTGGGATTCGACTCCTGGTCTTGCAGCCAGCA----TTGGGCCGGAAACCGAGAAACCGCACGCTCATGAGCGGCTGCAAAACCCGCAGCACGACCGGGCTGGCTGGGCCCGCGGCCTGGCT-----------------CCCGCTCTCCCGCCTGCTGTCTGAACCGCAGCCCGGCCGCCGGCTCCTGCCCTTCCGCCGCCAGTGTGGGGAGAGCCTCT-TGGGGTACGGGCCCCAGGTGGAGGTGCAGCTGCTGCCTGCCCAAGTTCCTGCTGCGGGAGCTCTGCCGGGCGCCAGGAAGCCTGCGCAGTCCCCGGCCGGTGTCCACCGAGCACGCAGGGAGCC s panTro1.chr6 160957726 700 - 161576975 AAAGTAGCCTTGAATCTTCA-TTGTAAAATTTAGAT--TTTGAGCAATTTTTAACTTGCTTTACTTGATTTTTAGAAAATACGCACACTGTTCACAACTCCTAGGTGAGGCACTAACCCTAAA-----------CCAGGGTAATGGC--TCGCCTGGGCCCCACTGA---CGTGGGGCTTTCAGCTGGAGCACCGACCGCACCACCCTGCGTGCACCAGGAGGTGGCGCATGATGCTGCACGGGCGCCCGGGGCAGCGCCTTCCC--------GCCGGGCGGCGACCAGGACGCGGGCGGGCATCAGTGTCTGTTTTCTGACACCTGGTACCAGCCGGAGGTGTTCATAGAAACGATGCGGAAAGCCCAG-GCCTGTCC--TCTGGCCTGGATCCTGGGATTCGACTCCTGGTCTTGCAGCCAGCA----TTGGGCCGGAAACCGAGAAACCGCACGCTCATGAGCGGCTGCAAAACCCGCAGCACGACCGGGCTGGCTGGGCCCGCGGCCTGGCTGGGCCCGCGGCCTGGCTCCCGCTCTCCCGCCTG---TCTGAACCGCAGCCCGGCCGCCGGCTCCTGCCCTTCTGCCGCCAGTGTGGGGAGAGCCTCT-TGGGCTACGGGCCCCAGGTGGAGCTGCAGCTGCTGCCTGCCCAAGTTCCTGCTGCGGGAGCTCTGCCGGGCGCCAGGAAGCCTGTGCAGTCCCCGGCCGGTGTCCACCGAGCACGCAGGGAGCC s canFam1.chrUn 89117614 591 - 91062872 aAAGAAAACTAGAACCTTGATTTTTAAAATCTAGATGACTTGAACAAT------CTTGTTTAAATTGG---TGAGTTGATAAACTCATTATTCACAAAGTC----TTAGACATAAATCCTACAGAGTCTGCTATTCACTGGAATGGCTGTCTATTGTGCCCTACAAAATTCAGGGGACAT-----TGTAACTCTGATCATGACA-GTTGAGTGTACCAGGAGGTAGAGC-TCACACAGTAGGCAAGTCCCTGGCCAGGCATGGCAGATGTGGGGCTAAGCAGTGACAGCAAGGCTTTCACACTGCTGCGCCTGCTTCCCTGATCCCCATGTGAACTGCAGGTAGGAATCACAGTAACTCATAAACCCCAACATCTGCCCAACTCAGTTAGGTTCCTGTGGTTACATTCTCTGCTCTGCAAAGAGTAACATTTAATATGTAAACC-----------------------TCTG-AAAACCCCCAG-ATAATCAGAACACCAAATGCTGCGG------------------------------GTCACACCAG---CCTGTGCTCTGCCCTTGCCTGCAGCCCCCATGTTCCCTCC----------------CCTCTGTGGGTTGCTGAAAGCAG-----GGTCTGGCCACTGCATGCACGTGCTCCTCC--------------------------------------CCTGGGCAGGTGCCC----------TTGGGAGCC a score=122593.0 s hg17.chr7_random 528413 241 + 778964 CCGTACCTGCTCTGCCGACAGGACCTCGCTGCTGGTGAGCGCCCAGAGGCAGGACACGGCAGCCGTGCGGATGGCCGCGGCTGTCCTCCCCGCATGCCACTGCAGATTGGGGGCCAGGATGTCCTTTGTCACCGTCTCGAGGTAGCTGGGAAACTGCCTGGAACCGGAACGGAGAGGGTGGATGAGG-AGACCGGACAGGT-GCTCGGAAGAA-ACGTTTCAGACTAGGGATGAA--TGGGGCTGA s panTro1.chr6 160958426 241 - 161576975 CCGTACCTGCTCTGCCGACAGGACCTCGCTGCTGGTGAGCGCCCAGAGGCAGGACACGGCAGCCGTGCGGATGGCCGCGGCTGTCCTCCCCGCATGCCACTGCAGATTGGGGGCCAGGATGTCCTTTGTCACCGTCTCGAGGTAGCTGGGAAACTGCCTGGAACCGGAACGGAGAGGGTGGATGAGG-AGACTGGACAGGC-GCTCGGAAGGG-ACGATTCAGACTGGGGATGAA--TGGGGCTGA s mm5.chr5 12635585 239 - 149219885 CCTTACCTGCTTGGCCGATAAGATGTCACTGCTGATGAGTGCCCACAGGCAGGATATAGCAGCCGTCCGGATGGCTGCAGCTGTCCTCCCTGCATGCCACTGCAGGTTGGGGGCTAGGATGTCATTTATTACCATATCCAAATAGCCACGGAACTGTCTGGAAC-------AAGAGGGCAAGTGAGGAAGGACAAACAGACTACTCTGAAGGACATGCTTCAGTTTGGGAATGGAACTGGACCTGA s rn3.chr12 15996312 239 + 46649226 CCTTACCTGCTTGGCCGATAAGATGTCACTGCTGATAAGTGCCCACAGACAGGATATGGTGGCCGTCCGGATGGCTGCAGCTGTCCTGCCTGCATGCCACTGTAGGTTGGGGGCTAGGATGTCATTTATTACCATATCCAAGTAGCCATGGAACTGTCTGGAAC-------AAGAGGGCAAGTAAAGAAGGACACACAGACTACTCTGAAGGACATACTATAGTTTGGGAACAGAAATGGACCTGA s canFam1.chrUn 89118205 204 - 91062872 --CCACCTGCTCTTCCGACAGGACCTCGCTGCTGATGAGCGCCCAGAGGCAGGACACAGCTGCCGTGCGGATGGCTGCGGCGGTCTTCCCTGCATGCCACTGCAGATTGGGGACCAGGATGTCCTTCGTCACAGTGTCGAGGTAGTGGTGGAACTGCCTGGGGT-----------GGAAACATGGGA------GCACAGGT-------AAAGA-----------CAAGGGAGCCA-----GGCTGA a score=48725.0 s hg17.chr7_random 528654 535 + 778964 GGGGGGAGCCAAACAGGAAAACGAACTCGACCCCAAAACACGAGGCCCCTCCTCCTCTCAGGAGCTGCTTCTCAGTGCGAATTGGGAGGTTCCTCCAGGCCCAACCCTACCGGGGAGACAGGGGTGCCTG-------TGCCCCTGGCCTCTCCTGCGGCC-CGCGTAGGTCCTGTTCTCCAGAGGCGAGCCAGAGGCCCTGGGCCGAGGGTGCACTTTCAGCCCCTCGCCGCTCCTAGCTTCAAAAGGAGGCCTGAGT------GACGCCTGGGCTAGGGCAGGTGCGGT--------GGTGTCGGCAGCACCCAGTGAGCCCCTTTCCCATCTGCATCCCTCCCCCAGAAAAAGGCCAAGTCTCTC-------------CAGCCACAGAACCCTCTGTCCAGCAAGGACAGTCGCTGCGGCTTCACAGAGGCGGGATGGGAGGGCCACAGGCGCGGTCCGGGGACCCAAGGGCCACAGCTCAGAGAGACG-GGCAGTTCCCACC----CTGTCGGCGACTTCGTCCTGATGGTGA--------------------CCAGTCAGGTCAAAGTGCCACCAAGACAAACTCAAAGCA s panTro1.chr6 160958667 534 - 161576975 GGGGG-AGCCAAACAGGAAAACGAACTCGACCCCAAAACACGAGGCCCCTCCTCCTCTCAGGAGCTGCTTCTCAGTGCGAATTGGGAGGTTCCTCCAGGCCCAACCCTACCGGGGAGACAGGGGTGCCTG-------TGCCCCTGGCGTCTCCTGCGGCC-CGCGTAGGTCCTGTTCTCCAGAGGCGAGCCAGAGGCCCTGGGTCGAGGGTGCACTTTCAGCCTCTCGCCGCTCCTAGCTTCGAAAGGAGGCCTGAGT------GACGCCTGGGCTAGGGCAGGTGCGGT--------GGTGTCGGCAGCACCCAGTGAGCCCCCTTCCCATCTGCATCCCTCCCCGAGAAAAACGCCAAGTCTCTC-------------CAGCCACAGAACCCTCCGTCCAGCAAGGACAGTCGCTGCGGCTTCACAGAGGTGGGATGGGAGGGCCACAGGCGTGGTCTGGGGACCCAAGGGCCACAGCTCAGAGAGACG-GGCAGTTCCCACC----CCGTCGGCGACTTCGTTCTGATGGTGA--------------------CCAGTCAGGTCAAAGTGCCACCAAGACAAACTCAAAGCA s canFam1.chrUn 89118409 535 - 91062872 -GGGG-----AAACCTGAA-------------CCAGGGCGCGAAGGTTTCCCT-------GGGGCAGGTGCCC--TGCAGGGGAGGAGGCAGCTAGA---------------GGGAGAGCTGGTGGCCTTCTAGAACTCCTCCCAGCCTCTGCTGGGCCCACTCAGAGGTTCTGAGCCTCTAGGGTGCCCCCAC--CCCTCTGCTGCAGG-GCTTTGTCAGTCTTTCCCCTTGCCT--CTGAAAGAGGAGGTAGGAAGTTACCAGGCACATTGACCA-GGCTGGCAAAGTCACTTGTAGGTGTGGCCACctctctctctctctctctctc-tctctctctctctctcacacacacacacacacacacacacacacacacacagacacaTGCCTAACTGTCCCCTGTGGGCA--TGCT-CCCCTCCACCCAAGGG----GAGAGCACTGCAGGTCTGCACCCAGGGCCTGAGTGCTGCAGCTCATGGAGACATGGATGTTCCCACCAGTAATAAGGGC-ACATCATCTGGATGGTGAACTCACATATCCCACTCTGCCTGGCCAGCTC--AGGGCTGCAGAGCCACACTCTGGGCA a score=2929.0 s hg17.chr7_random 529189 31 + 778964 AAATGACACACTCATTAGTGACATCCCAACA s panTro1.chr6 160959201 31 - 161576975 AAATGACACACTCATTAGTGACATCCCAACA a score=24540.0 s hg17.chr7_random 529220 202 + 778964 CCACGGTATGTTTCAAAGGTGGCTCTGGTCTCCAAGACCAGCTCCAC--------------------------------AGCCCGCAGCCCTCCAGCG----------TCCGTGAAGCCTGCACAGCGTCCCT--------------------TCCTC-------------TTCTG--GAGGCGCCACCGGCTTGCTCCTGGCAGGGGCCATGTTGGGACCAGC----CAGGTAGATGAGCAGATGTGGAAAGTGACGTTGGTGTGGTGTGATTTACACGCAT s panTro1.chr6 160959232 202 - 161576975 CCACGGTATGTTTCAAAGGTGGCTCTGGTCTCCAAGACCAGCTCCAC--------------------------------AGCCCGCGGCCCTCCAGCG----------TCCGTGAAGCCTGCACAGCGTCCCT--------------------TCCTC-------------TTCTG--GAGGTGCCACCGGCTTGCTCCCGGCAGGGTCCATGTTGGGACCAGC----CAGGTAGATGAGCAGATGTGGAAAGTGACGTTGGTGTGGTGTGATTTACACGCGT s canFam1.chrUn 89119056 266 - 91062872 CCAAAGCATATTTCAAAGGTGGCTTGTGTC-CCAATACCAGCTGCTCTTGAATACTGAAAAGGTAAAGCCTCTGGGGGGAGCCCG-AGCTCCACGACACCCTTGCTTCTCCTTGCATCCTGCGC--CATCCCTCTGGTCTGTCTCCAGCCTCATCCCCGACTGACCCAACTTTCTGATAAGGCTCCACCTGTTTGCTTCCAGCAGGGGGCATCCCAGAACCAGCGATGCAGGCAAAGGAGCAAAT-------------CTGGTTCTGGATGGTCTACacacac a score=591.0 s hg17.chr7_random 529422 6 + 778964 TCCGCG s panTro1.chr6 160959434 6 - 161576975 TCCGCG a score=16494.0 s hg17.chr7_random 529428 120 + 778964 AGGTTTCTGGCGTGGGTTCGTTTTTAAGCA--GAGCTGCCATTTTCGGCACCGTGACTTGCAAGAGGGCTCTCTGGAATGAACGAACCCAGCG-CCTGCTCCATG-GTCACCACATGAAATGGC s panTro1.chr6 160959440 120 - 161576975 AGGTTTCCGGCGTGGGTTCGTTTTTAAGCA--GAGCTGCCATTTTCGGCACCGTGACTTGCAAGAGGGCTCTCTGGAATGAACGAACCCAGCG-CCTGCTCCATG-GTGACCACATGAAATGGC s canFam1.chrUn 89119343 123 - 91062872 AGGTTTTCAATGTGCTTTAACTGTTATGCAAGGAACTGCTGCTTCTTGCAAAGTGATTCACAAGA-GTCTCTTCAGAAGGACCTAACCCTGAGTCCTGTCCTCTGAGTGTCCAGGTAAAGTAGC a score=33878.0 s hg17.chr7_random 529548 376 + 778964 CTGGAAGTCCTGGCCTTCAGGGTGTGGGGTCCAAGTGTGGGCCAGGCGTGCCACACGGGCGCCACCTAGGAGTGCTTAGGtttttttaaa------tttttttttttttttttttaattttGGGGTGAAGGATACTCAGCCTGTGTCTGACAGAAGCTCCATCAGAACTTCTGGGCATTGATCAGAACCACCATCGAACCACTGAATGAGGCACGttccttttttttgagacaaagtctcgctcttgctgcccaggctggagtgaaatggcgcaatctccgctcactgcaacctctgcctcccaggttcaagtgattctcctgcctcagcctcctgagtagctgggatcacaggcacttgccaccatgcACTGGGGCCGGGT s panTro1.chr6 160959560 379 - 161576975 CTGGAAGTCCTGGCCTTCAGGGTGCGGGGTCCAAGTGTGGGCCAGGCGTGCCACACGGGCGCCACCTAGGAGTGCTTAGG---TTTTAAAAAAAAttttttttttttttttttttAATTTTGGGGTGAAGGATACTCAGCCTGTGTCTGACAGAAGCTCCATCAGAACTTCTGGGCGTTGATCAGAACCACCATCGAACCACTGAACGAGGCACGTTCCttttttttgagacaaagtctcgctcttgctgcccaggctggagtgaaatggcgcaatctccactcactacaacctctgcctcccaagttcaagtgattctcctgcctcagcctcctgagtagctgggatcacaggcacttgccaccatgcACTGGGGCCGGGT a score=63216.0 s hg17.chr7_random 529924 682 + 778964 ACAGCCAGGCCTGCAGGACCCCAAGACACTATAGTCCACGGGCAGCAGGGC----------TGGGCACAGCCAGACCCACAGGACCCGAAGACGCTGCAGAGCCGGGGAACGAGGGGCCCAGCGGCTGGTGCTCCGGGTTCCCTGCCCGAGCACATTCCTATTCACAGAGGGACTCGAGGTCCACTGTGGGGCTTGACTTCCAGAAACGGTGCAGCCTCAAAGCCAGGAGCCTCTTGCCCTGAACTCGCAGCCACTTCTCTGGAGCTTCTGTCAGACGcaggctgagcatccttcacttcagaatgcaaagtgctccagggtctgaccatatctgagcactgacatgatgctcaaatgaaatactcactggagcattttggatttctgaagttcggattagggatgctctacaatgcaattactacagaattttaagaaaacctaaacacaactagtcccgagtgtcccaggtaagACACAGAAAGCCTGTGGGAGGCAGCCCTGAGAACCTCTCATGATTCATGGTGTCCAAGGTGGAGACACCATGGCAGACGCAGCCCTCAGCCCTCTTGGGCACCCGCACAGCAGGGACCTGCGTACAGCCGGCGCTCACAGCTGCGGTCAGCAGGAAGGTGCTCTGCGCAGACGATGGTCAGTGGCGACTCCCCGCCCACCATTTCTACTTCAGCAG s panTro1.chr6 160960797 692 - 161576975 ACAGCCAGGCCTGCAGGACCCCAAGATGCTACAGTCCACGGGCACCAGGGCCGGGCATAGCTGGGCACAGCCAGACCCATAGGACCCGAAGACGCTGCGGAGCCGGGGAGCGAGGGGCCCAGCGGCTGGTGCTCCGGGTTCCCTGCCCGAGCACATTCCTATTCACAGAGGGACTCGAGGTCCACTGTGGGGCTCGACTTCCAGAAACGGTGCAGCCTCAAAGCCAGGAGCCTCTTGCCCTGAACTCGCAGCCACTTATCTGGAGCTTCTGTCAGACGcaggctgagcatccttcacttcagaatgcaaagtgctccagggtctgaccatatctgagcactgacatgatgctcaaatgaaatactcactggagcattttggatttctgaagttcggattagggatgctctacaatgcaattactacagaattttaagaaaacctaaacacaactagtcccgagtgtcccaggtaagACACAGAAAGCCTGTGGGAGGCAGCCCTGAGAACCTCTCATGATTCATGGTGTCCAAGGTGGAGACACCATGGCAGACGCAGCCCTCAGCCCTCTTGGGCACCCGCACAGCAGGGACCTGCGTACAGCCAGCGCTCACAGCTGCGGGCAGCAGGAAGGTGCTCTGCGCAGACGATGGTCAGTGGCGACTCCCCGCCCACCATTTCTACTTCAGCAG a score=6816.0 s hg17.chr7_random 530606 41 + 778964 AGCCAACTTGCTATTTCATGATTCTAAAAATAAAAACCAAA s panTro1.chr6 160961489 41 - 161576975 AGCCAACTTGCTATTTCATGATTCTAAAAATAAAAACCAAA s mm5.chr5 12637651 41 - 149219885 AACCAACCTTTCATTCTACCATTCTGTGATTATAAATCAAA a score=965.0 s hg17.chr7_random 530647 14 + 778964 CGGATAAAAAAAAA s panTro1.chr6 160961530 14 - 161576975 CAGCTAAAAAAAAA a score=22165.0 s hg17.chr7_random 530661 272 + 778964 AATCTTTCCT----ATTAAAATAGCTAGTAAGTTCATTAAAATCACT------GCCATCTGAACACTTTACTTCTCTTGACGCCAACCGCCTTCCACAAGACGTTGTTAGGCGCACTTTCTTTGGGAACTCAGCCCAGATGTGGAAACTGTGCTCTGCAGAGTTAACTGTTCCTGGGCAGAACCTGCCCAGCGGTTCCTCCCAAAATACAGCCGAGTGTGAGTTCCAGAGGGAAGGGCCTGGACCCTGCTGTGTTATCTGCATGGCATCTACACAAATATCA s panTro1.chr6 160961544 275 - 161576975 A-TCTTTCCTGCCTATTAAAATAGCTAGTAAGTTCATTAAAATCACT------GCCATCTGAACACTTTACTTCTCTTGACGCCAACTGCCTTCCACAAGACATTGTTAGGCGCACTTTCTTTGGGAACTCAGCCCAGATGTGGAAACTGTGCTCTGCAGAGTTAACTGTTCCTGGGCAGAACCTGCCCAGCGGTTCCTCCCAAAATACAGCCGAGTGTGAGTTTCAGAGGGAAGGGCTTGGACCCTGCTGTGTTAACTGCATGGCATCTACACAAATATCA s mm5.chr5 12638090 238 - 149219885 AACTGTCCCT----ACCCAAACAG-TAGCAATCTC-------TCACTCAGTAAGTCATCTGCATAATTGGATTCTCTAGA--CTGACCTGATCCCTGGAGAGGTC-TGAAGTG---TGTCACTGGGAACCTGGCCCAAACCTGGCAGCTG-----------------TGTTTGTGGGTCAGGGGTG----GCAGTGTTCCTCAGCATAC-----TGGGTGTGTAGAAAAGGCTACAGTCTGGTGGCAGCTCAGCCATTCTCTCACTCCACTCCTGTGTACAC a score=1200.0 s hg17.chr7_random 530933 2 + 778964 GC s panTro1.chr6 160961819 2 - 161576975 GC s mm5.chr5 12638328 2 - 149219885 GC s rn3.chr12 15998811 2 + 46649226 GC a score=48961.0 s hg17.chr7_random 530935 124 + 778964 CTGCAAGCTGGACAGCTGCCACGGCTCTCGGTTCATATCTTTCTATGGTCCGTTCTAAGCCCTGAAGTCTTTGAAGACAAGCAGGAAACAAAATTTCCTGCA--GTACGACAGGCGGGCTG-AGGCC s panTro1.chr6 160961821 124 - 161576975 CTGCAAGCTGGACAGCTGCCACGGCTCTCGGTTCATATCTTTCTATGGTCCGTTCTAAGCCCTGAAGTCTTTGAAGACAAGCAGGAAACAAAATTTCCTGCA--GTACGACAGGCGGGCTG-AGGCC s mm5.chr5 12638330 124 - 149219885 CTGCCCGAAGGCCTGTTGCCAAGACGCTC-ATTAATACCTTTTTATGGTCCCTTTTCAGCCCTGAGGTTTTTTAGATC--GCAGGAAACAGAATTTCCTGCAGCGTGTGAGAGGCTGGCAGTCAGCC s rn3.chr12 15998813 124 + 46649226 CTGCTCAATGGCCTGTTGCCAAGACTCTC-ATTAATACGTTTTTATGGTCCCTTCTCAGCCCTGAGGTGTTTTAGATA--GCAGGAAACAGAATTTCCTGCAGTGTGTGAGAGGCTGGCAGTCAGCC s canFam1.chrUn 89120318 120 - 91062872 CTGCTGTCGGGAGGGCTCCCAGGGCTCAC--TTTGTCTCTTTTTATGG-CCACTGTAGGCTCAAAGCCTTGTGCAGACAAGCATGAAACAGAA-TTCCTGCA--ATTTGATGGGCTGACAG-AGCCC a score=8438.0 s hg17.chr7_random 531059 41 + 778964 CGAGAGCAGAGATGAGGGTCATGAAGGAGAAAAGTCTGAGC s panTro1.chr6 160961945 41 - 161576975 CGAGAGCAGAGATGAGGGTCATGAAGGAGAAAAGTCTGAGC s mm5.chr5 12638454 38 - 149219885 CCACATTAAGAGTGCA---CTCGAAGGAGAAAGGTTAGAAT s rn3.chr12 15998937 38 + 46649226 CTACATTAAGAGTGCA---CCCAAAGGAGGAAGGTTAGAAC a score=300.0 s hg17.chr7_random 531100 1 + 778964 G s panTro1.chr6 160961986 1 - 161576975 G s mm5.chr5 12638492 1 - 149219885 G a score=4189.0 s hg17.chr7_random 531101 45 + 778964 CCTGGACTCTTTCCACATGAGGCTCTGGTGTGTGAACTGCTTTCC s panTro1.chr6 160961987 45 - 161576975 CCTGGACTCTTTCCACATGAGGCTCCGGTGTGTGAACTGCTTTCC a score=12528.0 s hg17.chr7_random 531146 135 + 778964 GCTTTGACAGATGTGCTGCT-------GGGGCGGGTCCCGGTGCTGACGCAGCCCAGATCCAGCCGCACAGGCGGGGGTAGGACCCAGCTGACGGCACCTTTTGCTCTGAGCAAAGTAAGTGGCAGGGCCCTAAGAGCTGCC s panTro1.chr6 160962032 135 - 161576975 GCTTTGACAGATGTGCTGCT-------GGGGCGGGTCCCGGTGCTGACGCAGCCCAGATCCAGCCGCACAGGCGGGGGTAGGACCCAGCTGACGGCACCTTTTGCTCTGAGCAAAGTAAGCGGCAAGGCCCTAAGAGCTGCC s canFam1.chrUn 89120469 84 - 91062872 GCCCTGATGGATGTGCTCCTTCTAAGGGGATGGGGTCCC----CTCACGC--------------------------------------CTCACTGCCCACTCTACCC----------------CATGGCACCCAGCTCTGCC a score=0.0 s hg17.chr7_random 531281 13 + 778964 TCAGCAGTGGCAC a score=1133.0 s hg17.chr7_random 531281 13 + 778964 TCAGCAGTGGCAC s panTro1.chr6 160962167 13 - 161576975 TCAGCAGCGGCAC a score=1573.0 s hg17.chr7_random 531294 10 + 778964 CCGGGCGGGG s panTro1.chr6 160962180 10 - 161576975 CCGGGCGGGG s rn3.chr12 15999479 10 + 46649226 CTGGGCTTGC s canFam1.chrUn 89120553 10 - 91062872 CTGCGACGGA a score=205431.0 s hg17.chr7_random 531304 866 + 778964 CCTCTTCCTCCA-----CTGTCCCTCCCAGTG--CTCCTAGAGGGCACCCATGCTTC---TTGCCCTTACTTCAAAGCCGTACACCTGGAGGCCCTAGACCCTCGGGGTCTTAATGCCACCTAAAAG-TTGTCTTAGATAACAAAGAGGTATTTTTACCACTTTGACCATC-AATAGAAATTCAATCAGTTGTTTGTTAGGTTTGAAAAGTGCCCAAAGGCTTTTAAAACAGAGAACAGCTAATACATAAGCCATTAACAGTTAATGTTCCCTAAAACTTTTTCATTCACTGGAATTTTAATGACCACACGGAGATGACTTTGACTTAGTGCT----TCTCTGTGCATTCCCTGCCGAGAGCTTGTGTTTACCCAGTGAGGATGGACTAGCTGCTTCCAGGCCAGTTAAGCTCAGGGGTCACTGCACACGCCCACCTCAGACTTGGTGTGGGGAACCCTCACCCAGAGTGCT--------------------------------------------GTGGGGGAGGGAGGTGGGGACCCCCGGCCCACCTTAGACTCGGCGTGGGGGAGGGAGGTGGGGACCCCCGGCCCACCTTTGACTCAGTGTGGGGGAGGGAGATGGGGAACCCCTTGCGCAGTGCAGTGTTGGGGAAGGAGGTGGGAACCCCCTTGCTCAGTGAGCTGTTGGGGAGGGAGATGGGGACCCCTGGCCCAGGCCCCA---GCTGGGGGCCGTGCAGAGGCA-GAGCCCGGACCTACCCCTGGGAGTTGATGGTGTCCGTGGCTCTGAGCAGCACGGTGGACAGGATGGAGAACAGCTTCAGGCGCATCTGCGGGTCTTGGGAGGGCTGCAGACAGGCCCTCAGCGTGGGCACGACGTGTGGCAGGGCTTCTCCCAGGGCAGGGCCTGTAAGACACAACAGAGGCTCC s panTro1.chr6 160962190 910 - 161576975 CCTCTTCCTCCA-----CTGTCCCTCCCAGCA--CTCCTAGAGGGCACCCATGCTTC---TTGCCCTTACTTCAAAGCCGTACACCTGGAGGCCCTAGACCCTCGGGGTCTTAATGCCACCTAAAAG-TTGTCTTAGATAACAAAGAGGTATTTTTACCACTTCGACCATC-AATAGAAATTCAATCAGTTCTTTGTTAGGTTTGAAAAGTGCCCAAAAGCTTTTAAAACAGAGAACAGCTAATACATAAGCCATTAACAGTTAATGTTCCCTAAAACTTTTTCATTCACTGGAATTTTAATGACCACATGGAGATGACTTTGACTTAGTGCT----TCTCTGTGCATTCCCTGCCGAGAGCTTGTGTTTACCCAGTGAGGATGGACTAGCTGCTTCTGGGCCAGTTAAGCTCAGGGGTCACTGCATACGCCCACCTCAGACTTGGTGTGGGGAACCCTCGCCCAGAGTGCTGTGGGGGAGGGAGGTGGGGACCCCCGGCCCACCTTTGACTCGGCGTGGGGGAGGGAGGTGGGGACCCCCGGCCCACCTTAGACTCGGCGTGGGGGAGGGAGGTGGGGACCCCCGGCCCACCTTTGACTCGGTGTGGGGGAGGGAGATGGGGACCCCCTTGCGCAGTGCAGTGTTGGGGAAGGAGGTGGGAACCCCCTTGCTCAGTGAGCTGTTGGGGAGGGAGATGGGGACCCCTGGCCCAGGCCCCA---GCTGGGGGCCGTGCAGAGGCA-GAGCCCGGACCTACCCCTGGGAGTTGATGGTGTCCGCAGCTCTGAGCAGCACGGTGGACAGGATGGAGAACAGCTTCAGGCGCATCTGCGGGTCTTGGGAGGGCTGCAGACAGGCCCTGAGCGTGGGCACGACGTGTGGCAGGGCTTCTCCCAGGGCAGGGCCTGTAAGACACAACAGAGGCTCC s mm5.chr5 12638908 646 - 149219885 CCTCCTCCCCTGAGAGCCTGTTCTTTCCTAAG--CTCTT------------TGTTCCACTTTCCCTTTACTTCAAAGCCATAAAATCTGAGGCTCT--------TAGGTTGCAGAGCTGCCCCTGAGCTTTTCTGAGATAACAGA---CTACCCTTAAGCCTTC-ACCATC-AATGCTAATTTAGTCAG--GTCTGTTAGGTCTGAAAGGTGCCAAAAGCCTTTTAAAAC--AGAACAGCCGAAACAGAAGCCATTAATAGTTAATGCGCCCTAAAACTTTCTCACTCGATGGAATTTTAATGACTCCTCTAAAGTGACTTTGATTTACTGTCTGTGTCTCTGTGGTATACTCACCAAGATCAC-TGTTTACCTAGTG-GGGTGGA--------TTCTAG---AGATA-----------------------------CAGAC-----------------CACCAAGAA------------------------------------------------G---------------------CCCGG---ACTTTAGAC----CTTGGGGG---------------CCCTGCCCA-------------------GGGGGTCGTGGGAAGACCCAT--CCAACACA-------------------------------TACGTGGGCTGT------------------------ACACAGAC--------CTGAGGGTC-------------------GACCTACCCCTGAGAATCGACAGTGTCCTTAGGCCTCAGCAGCATCATGGACAGGATAGAGAAGAGCTTCAGGCGCATGTGTGGGTCTGTGGAGGGCTGGAGACAGGCCCTGAGGGTGGGGATCACATGCTGCAGCGCTTCTCCCACAGCCGGGCCTAGGAAAGAGAACAGGGGCTGC s rn3.chr12 15999489 635 + 46649226 TTCCCTCCCCCA-GAGCCTGCTCTTTCCTAAG--CTCTT------------TGTTCCCCTTCCTCTTGACTTCAAAGCCATAAAACTGGAGGCTCT--------GAGGTTGCCGAGGC----------TCCGCTGAGATAACAGA-AGCTGCCCCTAAGCCTGC-ACCATC-AATGCTAATTCAGTCAG--GTCTG-TAGGTCTGAAAGGTGCCAAAAGGCTTTTAAAAC--ACAACAGCTGAAACAGAAGCCATTAATAGTTAATGTGCCCTAAAACTTTCTCACTCAATGGAATTTTAATGACTCCCCTAAAGTGACTTTGATTTACTGTCTGTGTCTCTGTGGTGCACTCACCGAGATCAC-TGTTTACCTAGTG-GGGTAGA--------TTCTAG-----------------------GGATA---------CAGAC-----------------CACCAAGAA------------------------------------------------G----------------------CTGT---ACCTTAGAC----CTTGGGGG---------------CCCTGTCCA---------------------------------------------------------------------------------------GGCAGCGAGGGAAG----------------ACCCATCCAACACTTAATGTGGGCTGTACACAGACGTGAGGGCTGACCTACCCCTGAGAGTCGACGGTGTCCTTAGGCCTCAGCAGCAATGAAGACAGGATAGAGAAGAGCTTCAGGCGCATGTGTGGGTCTGTGGTGGGCTGGAGACAGGCCCTGAGAGTGGGGATCACATGCTGCAGAGCCTCTCCCACAGCTGGGCCTAGAAAAGAGAAAAGGGACTGC s canFam1.chrUn 89120563 573 - 91062872 TTTAGGTCACTC-----CTGTCCTTCCCACCAGCATCTC------------TGCTCTCCAT--CCCTCACTGCAGAGCTGCCACATTAGAGGTCTT------TCAGTGTTT----GCTGCCTCAAAG-TTCTCATGG---ACAGA--------------------ATCTTCTAACAGTGATTCAATCCATTCTTTGTTAGGTTTGAAAGGTACCGAAAGACTATTAAAAGTGAGAACAGCTAATATATAAACCATTAATAGTTAATGTTCCCTGAAACCTCTTCATTCAATGGAATTTTAACGGCCACACGAAAATGAC-TTGACTTCGTGTCTGTCCGACTGGGCTCTCATTGCAGGGC-----TGTTTACCCAGGGAGAGCGG----------------------------------------------------CTGGC--------------------------------------------------------------------------G----------------------CCAG--------AGCC----CGGGGTGA--------------CCCCAGCTC------------------------------------------------------------------------------------------CTGTCTGAGAGG----------------ACC----CCACAGAGGCCAGAGGCC------AGGCA--------GACTTACCCCTGGGAGTCGATGGTCTGCTTTGCATTCAGCAGCACCCGTGACAGGCAAGAGAAGAGCCTCAGGCGCATCTGCGGGTCTCTGGCTGGCTGGAGGCAGCTCCTAAGGATGGGCATGAGGTGGGGCAGCACTTCTCCCAGCGCCGGGCCTGGAAAACACACACCCAGTTCC a score=0.0 s hg17.chr7_random 532170 4 + 778964 TGTG a score=269.0 s hg17.chr7_random 532170 2 + 778964 TG s panTro1.chr6 160963100 2 - 161576975 TG s mm5.chr5 12639554 2 - 149219885 AG s rn3.chr12 16000124 2 + 46649226 CG a score=-755.0 s hg17.chr7_random 532172 2 + 778964 ---------------TG s panTro1.chr6 160963102 2 - 161576975 ---------------TG s mm5.chr5 12639556 17 - 149219885 CAGGCCACCGATGGCTT a score=14413.0 s hg17.chr7_random 532174 176 + 778964 CACGGCCCTCA---GGAGACGGGAGGAGGCCCCATCCAGCACAGGCCCAGGCTCA--------------GGCGCTCCCACCTGGGAGAGGGCACTATCGGCC-----ACCACCTCCCCGCTTCCTCTTTCTCAATCAGTAAGGTGATTATCACAGAAAAGCAGC--------AGAAAATTTTAACCCCCCAAAATCACGTTTTTCC---- s panTro1.chr6 160963104 176 - 161576975 CACGGCCCTCA---GGAGACGGGAGGAGGCCCCATCCAGCACAGGCCCAGGCTCA--------------GGCGCTCCCACCTGGGAGAGGGCACTATCGGCC-----ACCACCTCCCTGCTTCCTCTTTCTCAATCAGTAAGGTGATTATCACAGAAAAGCAGC--------AGAAAATTTTAACCCCCCAAAATCACGTTTTTCC---- s mm5.chr5 12639573 182 - 149219885 CCCAGGCCTCA---CTGCTGGGGTAGGAGCCCTGCAAGCCACAGGCCATGGCTCGCCTTCCTGACATGCTGCTCTCCCAACTGCT-GAGGACACTAACAAAC-----TCCAGCATCGCCCTCCCT---------------ATGTGACCAAGACACAAATCCAGCTTCTCTTTACAACTTCTAAATTATTCTAAATTATTTTTTTTT---- s canFam1.chrUn 89121136 160 - 91062872 CACGGTTCTTGCTCGCAGATGGACAGCAGCC--------CACGGCTGCAGGGTCA---------------GCACCTGTGCCGAAG-GCGGGGGCCAGCACGCCCTGTCCCACCACCTTCCTTTCC-TTTCCGGATCGTGGGTGTCACTAT----------------------AAAACATTTAA---CCCCCAAATCATGCTTATCATTCA a score=1996.0 s hg17.chr7_random 532350 9 + 778964 ATATGAAAA s panTro1.chr6 160963280 9 - 161576975 ATATGAAAA s canFam1.chrUn 89121296 9 - 91062872 ACATGGAAA a score=55540.0 s hg17.chr7_random 532359 597 + 778964 CCTATTTggtcaggcatggtggctcatgcctataatcccagcactttgggaggccaaggagggaggatcacctgaggtccagagtttgagaccagcctggtcaacatggtgaaaccccatctccactaaaaatacaaaaattaccctagcatggtggcatatacctgtagtcccatctacttgggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgcagtgagccgagatcgtgccactgcactccagcctgggtgacaaagtgagactatgtctcaaaaaaacaaaaaca-----aaaacaaaaCctggacgtggtggctcacgcctataattccagcactttggaaagccaagatgggtgacctgaggtcacctgaggtcgggagttcgagaccagcctgaccaacatggagaaaaatcccatctctactaaaaatacaaaattagctgggcgtggtggtgggcgcctgtaatcccagctgcttgactgcttgaacccgtgaggcggaagttgcggtgagctgagatcgcactattgcactccagcctgggcaccaagagcaaaactccatctcaaaaacaaaacaa s panTro1.chr6 160963289 602 - 161576975 CCTATTTggccaggcatggtggctcatgcctataatcccagcactttgggaggccaaggagggagaatcacctgaggtccagagtttgagaccagcctggtcaacatggtgaaaccccatctccactaaaaatacaaaaattaccctagcatggtggcatgtacctgtagtcccatctgcttgggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgcagtgagccgagatcgtgccactgcactccagcctgggtgacaaagtgagactctgtctcaaaaaaacaaaaacaaaaacaaaacaaaaCctggacgtggtggctcacgcctataattccagcactttggaaagccaagatgggtgacctgaggtcacctgaggtcgggagttcgagaccagcctgaccaacatggagaaaaatcccatctctactaaaaatacaaaattagctgggcgtggtggtgggcacctgtaatcccagctgcttgactgcttgaacccgtgaggcggaagttgcggtgagctgagatcgcactattgcactccagcctgggcaccaagagcaaaactccgtctcaaaaacaaaaCAA a score=300.0 s hg17.chr7_random 532956 1 + 778964 C s panTro1.chr6 160963891 1 - 161576975 C s mm5.chr5 12639898 1 - 149219885 C a score=6700.0 s hg17.chr7_random 532957 34 + 778964 CTTCCATTTTTCTTAAACTTTTCTAAATTTTTTT s panTro1.chr6 160963892 34 - 161576975 CTTCCATTTTTCTTAAACTTTTCTAAATTTTTTT s mm5.chr5 12639899 34 - 149219885 TTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTT s canFam1.chrUn 89121305 33 - 91062872 CTTCCTATTTCCTTATATTTTCCCAGATACTTA- a score=17925.0 s hg17.chr7_random 532991 108 + 778964 GAAAAATTAAAGTCAAGCAATAGTTGAAACAACGACCAAAATCAATTGTTTCAGTGAAAGAACTTCTTTAATATCTGCTTCTCAGCGTTGCAGCCCTCACCCCGCCCA s panTro1.chr6 160963926 108 - 161576975 GAAAAATTAAAGTCAAGCAATAGTTGAAACAACGACCAAAATCAATTGTTTCAGTGAAAGAAGTTGTTTAATATCCGCTTCTCAGCGTTGCAGCCCTCACCCCGCCCA s canFam1.chrUn 89121338 108 - 91062872 AAAAAATTCAAGTTAAGCAATATTTTAAAGATCAACCAAAATAAATTATTCAGAACACGTAAGGTGTTTAATATTTGCCCCTACACTTGGCAGCCATCGCTCTACTCA a score=79408.0 s hg17.chr7_random 533099 933 + 778964 CACTCAGGGCCAAGCTCCTGCACCGTGGCTGCTCTCCGGTGGGCGCGAGGCTTGGGCGCCTGCACTGTGCATCCTACGCCCCAAGGGGTCCCCACTGCAGTAGGGCCGCCCCGCCTCCCTGTAAGTCTCCATGAATGACAGGGCAAGGACAGCTCTGAGAGTCCCTGCAGCGTCTCCTGCCAGGCTCAGCCTGCAGGCCCAGGAGCTGAAGGCTCAGGGTGGGGACTGGGTTGGGGCCGCAGAAGGAGGCGCTCTGGCCCCGGGCCAGTGTAGAGGGAGCGTCCACTGGCTTATCCAAGCAACTGTGAGTCACCTTGAGCCGTTGCTGGGGACCTCGCGATGTGAGCCTTCTCCCTGGCGCCGCCAGTCATCAGAGCAGGCTGCTCGGTAGTGGACTGAGACCCCCGCACCTGCCCTTGCCACACGGAGACGCAATGTACTCGCTGCTCTGGCTCGAAG-----------TCAGGCCTCGCGGTGAGACCAGCTGGTGTCTTGGAGGGCCTCCCCACGCAGCCGGGCAGGAGGCGTTGCACCGAAGCTGCTGGGACGCCTGACTTGAGCCTCCCGCCAGAGCACGAGTCTTGGGCCAAGTGCCGCCCTGCCACGAGAACCACGCTGCTTCTGACCCAGTTTCTGACTGTTTCACCCTCTCTACATCTTAAACTGGAAACAAGACAGTGTTTCTGGCTTAAAAACAAAAAGAAAACAGCCAAATGTCCACAGGTCAAGTCCAACTCCTGGGATGGGAAAAAGAAGCACGCTGACGGGTGAGCCACTTGCTGTCAAGAATGTTCAAACCTGACGCCTGGGCCACGTGTCTGCCTTCCCAGCATGAGCGCTCCTGCTTGCAGCACGGACACTTCTGCCCGGGCCACCCATCTGCCTTCCCAGCATGAGCGCTCCTGCTCGAGGTAGGCGTGGACACTTCCGCCTGGG s panTro1.chr6 160964034 883 - 161576975 CACTCAGGGCCAAGCTCCTGCACCGTGGCTGCTCTCCGGTGGGCGCGAGGCTTGGGCGCCTGCACTGTGCATCCTACGCCCCAAGGGGTCCCCACTGCAGTAGGGCCGCCCCGCCTCCCTGTAAGTCTCCATGAATGACAGGGCAAGGACAGCTCTGAGGGTCCCTGCAGCGTCTCCTGCCAGGCTCAGCCTGCAGGCCCAGGAGCTGAAGGCTCAGGGTGGGGACTGGGTTGGGGCCGCAGAAGGAGGCACTCTGGCCCCGGGCCAGTGTAGAGGGAGCATCCACTGGCTTATCCAAGCAACTGTGAGTCACCTTGAGCCGTTGCTGGGGACCTCGCGATGTGAGCCTTCTCCCTGGCGCCGCCAGTGATCAGAGCAGGGGGCTCGGTAGTGGACTGAGACCCCCCCACCTGCCCTTGCCACACGGAGACGCAATGTACTCGCTGCTCTGGCTCGAAGTCAGGCCTCGCTCAGGCCTCGCGGTGAGACCAGCTGGTGTCTTGGAGGGCCTCCCCACGCAGCCGGGCAGGAGGCGTTGCACTGAAGCTGCTGGGACGCCTGACTTGAGCCTCCCGCCAGAGCACGAGTCTCGGGCCAAGTGCCGCCCTGCCACGAGAACCACGCTGCTTCTGACCCAGTTTCTGACTGTTTCACCCTCTCTACATCTTAAACTGGAAACAAGACAGTGTTTCTGGCTTAAAAACAAAAAGAAAACAGCCAAATGTCCACAGGTCACGTCCAACTCCTGGGATGGGAAAAAGAAGCACGCTGACGGGTGAGCCACTTGCTGTCAAGAATATTCAAACCTGACGCCTGGGCCACGTG-------------------------------------------------------------TCTGCCTTCCCAGCATGAGCGCTCCTGCTCGAGGTAGGCGTGGACACTTCCGCCTGGG a score=3930.0 s hg17.chr7_random 533913 61 + 778964 TCTGCCTTCCCAGCATGAGCGCTCCTGCTTGCAGCACGGACACTTCTGCCCGGGCCACCCA s panTro1.chr6 160964924 60 - 161576975 TGTGCCCTCCCAGCACTAGCGCTCCTGCTTGCAGCACGGACACTTCCACC-GGACCACTTG a score=260.0 s hg17.chr7_random 534032 4 + 778964 CCAC s mm5.chr1_random 1398818 4 + 21074182 CCAT a score=895.0 s hg17.chr7_random 534036 8 + 778964 GTGTCTGC s panTro1.chr6 160964921 8 - 161576975 GTGTGTGC s mm5.chr1_random 1398822 8 + 21074182 CTGTCTAT a score=43102.0 s hg17.chr7_random 534044 598 + 778964 CCTCCCAGC---ACTAGCGCTCCTGCTTGCAGCAC---GGACACTTCCACT-----GGACCACTTG-TCTGCCCTCCCAGCGCGA-GCTCCTG--CTCGCTGCACGGACACTTCCGCCCGGACCACGTG-----TCTGCCCTCCCAGCCGGAGCGCCCACTCGCAGCACAGACACTTCCGCCC-GGACCACGTGTCTTCCCTCCCAGTGTG---AGCTGCGGCTCACAGCACAGACACTTCCGCCA-----------------------------------------------------------GGATCACGTGTCTGCCCT--CCCAGCGAGAGCTCCTGCTCGCAGCACGGACACTTCCGCCC-AGACCACGTGTCTCCCCTCCC------AGCGCTAGCTCCTCCTCGCAGCACGGACACTTCCGCCCTGATCACGTGTC--TCCCCTCCCAG-----TGCGAGCTCCTGCT-GCAGCATGGACACTTCCGCCTGGACCACGTGTCTGCGCTCCCAGC---CGCGAGCGCTCGCAGCATGGACACTTCCGCCCAGATCACCTG---TCTCCGCTCC-CAGCGCGA--GCTCCCGCTCGCT---GCACGGACACTTCCGCCC-GGACCACGTGTCTGCCCTCCC---AGCGC---CAGCTCCTGCTCGCTGCAAGGACACTTCCGCC-----CGGGCCACGTGTCTACCTTCCAAGCAC s panTro1.chr6 160964929 660 - 161576975 CCTCCCAGC---ACTAGCGCTCCTGCTTGCAGCAC---GGACACTTCCACC-----GGACCACTTG-TCTGCCCTCCCAGCGCGA-GCTCCTG--CTCGCTGCACGGACACTTCCGCCCGGACCACGTG-----TCTGCCCTCCCAGCCGGAGCGCCTACTCGCAGCACAGACACTTCCGCCC-GGACCACGTGTCTTCCCTCCCAGCGTG---AGCTCTGGCTCGCAGCACGGACACTTCCGCCAGGATCACGTGTCTCCCCTCCCAGCGTGAGCTTCTGCTTGCAGCACGGACACTTCCGCCCGGATCACGTGTCTGCCCT--CCCTGCGAGAGCTCCTGCTCGCAGCACGTACACTTCCGCCC-AGACCACGTGTCTCCCCTCCC------ATCGCTAGCTCCTCCTCGCAGCACGGACACTTCCGCCCTGATCACGTGTC--TCCCCTCCCAG-----TGCGAGCTCCTGCTGGCAGCATGGACACTTCCGCCTGGACCACGTGTCTGCGCTCCCAGC---TGCGAGCGCTCGCAGCATGGACACTTCCGCCCAGATCACCTG---TCTCCACTCC-CTGCACGGACACTTCCGCCCCCT---GCACGGACACTTCCGCCC-GGACCACGTGTGTGCCCTCCC---AGCGC---CAGCTCCTGCTCGCTGCACGGACACTTCCGCC-----CGGGCCACGTGTCTACCTTCCAAGCAC s mm5.chr1_random 1398830 596 + 21074182 CTGCCCCAA---ACACATCCATCTGCCAGTAGCACACTGTCTGCCCCCAC------AGCCCAACTA-TCTGCCCCCACAGCCCAA-CTATCTGCCCCCACAGCCCAACTATCTGCCCCCAGCACATCTA-----TCTGCCCCCACAGCCCAACTATCTGCCCCCAGCACATCTATCTGCCCCC-AGCACATCTATCTGCCCCCACAGCACATCTATCTGC-CCCCACAGCACATCTATCTGCCCCC-----------------------------------------------------------AGCACATCTATCTGCC----CCCAGCACATCTATCTGCGCCCAGCACATCTATCTGCCCCC-ACAGCACATCTATCTGCCCCC------AGCACATCTATCTGCGCCCAGCACATCTA--TCTGCCCCCAGCACATCTA--TCTGCCCCCAG-----CACATCTATCTGCCCCCAGCACATCTATCTGCGCCCAGCACATCTATCT--GCCCCCAGCACATCTATCTGCCCCCAGCACATCTATCTGCGCCCAGCACATCTA---TCT--GCCCC-CAGCACAT--CTATCTGCCCCCA---GCACATCTATCTGCCCCC-AGCACATCTATCTGCC--CCC---AGCAC---ATCTATCTGCCCCCAGCACATCTATCTGCCCC-----CAGCACATCTATCTGCC--CCCAGCAC s danRer1.chrNA 353339867 596 + 390413307 CCGCCCAGAATGACTGATAGTCCTGCTCTAAAT-----GAATAGCTCTGCCCTGAATGACTGATAGTTCTGCCCTAAACGACTGATAGTTCTG--CT--CTAAATGAATACCTCTGCCCTAAATAACTGATAGTTCTGCCC--------------------CAAATTACTGATAGTTCCGCCCTAAAGCACTGAT-------------------AGCTCCGCCCTAAAGCACTGATAGTTCCGCCCTAAAT------------------------------------------------------GACTGATAGCTCCACCCTAAAGCACTGATAGATCCACCCTGAAGCACTGATAGTTCCGCCCTAAATGACTGATAGTTACGCCATAAACGACTGATAGCTCCACCCTAAAGTACTGATAGCTCCACCCTAAATGACTGATAGTCCTGCCCCAAATTACTGATAGTTCCGCCCTGAAGCACTGATAGTTCCGCC----CTAAATGACTGATAGCTCTGC-----------CCTAAAAGACTGATAGTTACGCCATAAACGACTGATAGCTCCACCCTAAAGCACTG--ATAGCTCCACCCTAAAGCACTGATAAATCTGCCCTAAAGCACTGATAAATCCGCCCTAAAGCACTGATAGTTCCGCCCTAAAGCACAGATAGTTACACCATAAACGACTGATAGCTCCACT--CTA----- a score=-31.0 s hg17.chr7_random 534642 1 + 778964 G s danRer1.chrNA 353340463 1 + 390413307 A a score=100.0 s hg17.chr7_random 534642 1 + 778964 G s panTro1.chr6 160965589 1 - 161576975 G a score=18242.0 s hg17.chr7_random 534643 293 + 778964 AGCGCTCCTGCTGGCGGACACTTCTGCCC-GGAGC-CACGTGTCCGCCCTCCCAGC-ACTAGC-GCTCCTGCTTGCAGCAGGGACA-----CTTCCACCGGACCATGTGTCTGCCCTCCCAGCGTG-----AGCTCCTGCTCGCAGCAGGGACACTTCCACCCGGACCACGTGTCTGCCCTCC-------CAGCGGGAGCTCCTGCTGGCAGC-ACGGACACTTCCGCCC--GGATCACGTGTCTCCCCTCCC---AGCGC---CAGCTCCGCCTCGCAGCACGGACACTTCCGCCCTGATCACGTGTCTCCCCTCCCAGTGC s panTro1.chr6 160965590 292 - 161576975 AGCGCTCCTGCTGGCGGACACTTCTGCCC-GGAGC-CACGTGTCCGCCCTCCCAGC-ACTAGC-GTTCCTGCTTGCAGCAGGGACA-----CTTCCACGGGACCACGTGTCTGCCCTCCCAGCGTG-----AGCTCCTGCTCGCTACACGGACACTTCTGCCCGGGCCACGTGTCTGCCCTTC-------CAGCGAGAGCT-CTGCTCGCAGC-ACGGACACTTCCGCCC--GGATCACGTGTTTCCCCTCCC---AGCGC---CAGCTCCTCCTCGCAACACGGACACTTCCGCCCTGATCACGTGTCTCCCCTCCCAGTGC s mm5.chr1_random 1399174 271 + 21074182 AGCACATCTA------------TCTGCCC-CCAGCACATCTATCTGCCC---------CCAGC-ACATCTATCTGCGCCCAGCACATCTATCTGCCCCCAGCACATCTATCTGCC--CCCAGCACA-----TCTATCTGCGCCCAGCACATCTATCTGCCCCCAGCACATCTATCTGCCC--C-------CAGCACATCTATCTGCCCCCAGC-ACATCTA--TCTGCCC--CCAGCACATCTATCTGCCCCC---AGCAC---ATCTATCTGCCCCCAGCACATCTA--TCTGCCCCCAGCACATCTATCTGTGCCCAGCAC s danRer1.chrNA 353340464 273 + 390413307 AGCACT----------GATAAATCCGCCCTAAAGCACAGATAGTTACACCATAAACGACTGATAGCTCCACTCTAAAGCACTGATA-----AATCCGC-------------------CCTAAAGCACTGATAGTTCCGCCCTAAAGCACAGATAGTTACACCATAAACGACTGATAGCTCCACTCTAAAGCACTGATAGTT-CTGCCCTTAATGACTGATAGCTCCGCACTTAAAGCACTGATAGCCCCGCCCTAAAGCACTGATAGATCCGCCCTACAGCACTGATATTTCCGCCCTAAATGACTGA--------------- a score=5201.0 s hg17.chr7_random 534936 36 + 778964 GAGTTCCTGCTTGCAGCACGGACACTTCTGCACTGG s panTro1.chr6 160965882 36 - 161576975 GAGTTCCTGCTTGCAGCACGGGCACTTCTGCACTGG s danRer1.chrNA 353340737 36 + 390413307 TAGCTCCGCCCTAAAGCACTGATAGCTCAGCCCTAG a score=300289.0 s hg17.chr7_random 534972 3325 + 778964 CTTCACtttccctccatatcacaccacacctgtcttcccattttgctataaaggcttaggataattgtttttaatggttgccagagcatttcttctatggaaatatcattatgtatttaacttcgtatgaggtatttgggtcacttacaattt---ctattaaattatgccccgatgcatatttttgggtgcatagctttttccataattagaattggaaggatagattctcatgaatgtgattgctggatgaaaggagtgaagacattGGCAATTCCAGATGCGCAGCGTCCCACGGCTTTCCAAAAGCACCTTGGCACTCCCAGCTCAGCCACCCTAGGCAGCAGC----TATTTCACTTAATTGGATAAATGAAGAAATGGGACCCTACAGtcttttttttttttttttttgagaccgagtctcgctctgtcgcctaggctggagggcagtggcacagtctcggctcactgcaagccccgtctcctgggttcacgccattgtcctgcctcagcctcccgagtagctgggaccacaagcgcccgccaccgcacccagctaattttttgtatttttagtagagacggggtttcatcatgttagccaggatggtctcgatctcctgacatcgggatctgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcccagcGGGACCCTACAGTCTTTAATTCATATTTCCTCATCACTAGAAGGGCTGGATAGTTCCCACTCTATTTGCTTATTAGTTGTATTAATTCTTTTTTATAAAATGTGGATATTTTGCCTGTTTGTTTGGGAGTTAATGCtttttgttttttggaatcatggtctctctctgttgtccgggctggagtgcagtggtacaatcacagctccctgaagcctcaatttctgagctcacgtgagcctccttgcctcagcctctatcatcagagcaggctgctcggttatggactcagagtgctgagattataggcgtgagccaccgtgcccaactcttaatgcttttgttctcattttgtGTCAGCTTTATGTAACAAAGATCTCACACTGTCATCCTTATTGCAAATATTTTCCTAAGTCTATGTTCCTTTTATTTTGGTTCAAATGTATATAGTCAAATCAATGTCTTTGTAGATCCCCCATCCTCTCAAAGTTTAGAAATTATCCCTTTCTGTATGtttaaaataattaaaatttaaaaGGTATCTTCCCATAGAACTTTTGTAAATGAGAAATTTAAAAATTTCTCCTATTAAAAAATTGTTTTAATCCTtttgtcttctgtttattacagtagtgcatgctcattagagaaagcttagaaaaacatagaaaaaaataaagaagaaaataaaaatcatctgtattccAAGGACACGATGTTGGAAATATTGTATTATATTTGAGGCTGTGCCCCCGACTCCCAAGAGCACCACACATGTGTGCGCTCAGATGGGGCTCAGAGAACATAATCATCATTGGGAAATGCAGTTTTAAAccaggcatggtggcttatgcctgttaatcccagcactttgggagggtgaggtgggaagactgttcgagcctaggagtttgaggtcagcctgggcaacataaagagaccccatgtctacaaaaaatacaaaaattagccaggcgtggtagtgggtgcctgtggtcccagctactcaggaggctgaggcaggaggatcgcttgagcccaggagttcaagactagcctggcagcatatatgaccccatttctagaaaaacatacagaagtagccaggtggcgtatgcctacaatcccatctactcaggaggctaaggcagaaaaatcacttgatcccggaagtttgaggctacagtgagctgtgatcgtaccactgcactccagcctgggtgacagcgtgagacc--gtctcaaaaaacaaaaaacaaaaaaaCCCATACAGTTTTATACCCAGCTCTTGACACTGAACGGCATACTGCAGTCTTCCTGCCTTTCAGTGAATGACAGGAGATGTGGGCCCAAAGAGATGTGTGTTCCAAGCTGCCAATCAGTTCCGCCAAC-ACCATAAGAAATGCTTCTGCAAAGAGGAAGAACAGATGGTGGAGAAGCCACCAGAGCTGCAGTAAATGCAAGTCCTGGCTTCACTGCAAGCCACGTCTCTCGGGGTTTGTGTGCCCAATTTTCTGGACTGTGAGGTGAAGGCTGGAGTAATTTGGTGCAAGAGGTTGTTAGGAGTAACATTCAGTAAAAATCTGAAATGCAACACCCTGGGCCCCCATCCAAGAGGCCCGTGGGAGAGGGGCTGAGGGAGGCTCTGGAGTCGCTGCCTCGGGAGTtctctgtgctctgcctccttgtctgtgaaacggggtcacagttcccaccacacaggccggctgtgagggtagatgagctgacggccctaaggcttgcagagcagcgtctggcataaagtgtttaatGCCCCGAGTGCACGTCAGCAATCGCCAGCtttgttttttgtttggttttagagacagggccttgctctgttgcccaggctggagtgcagcagtgcagtcacagctcactgaagcttcgaactcctgggctccagggatcctcccgcttcagcttcctgagtagctggggccacaggcgcacaccaccacgcctggctaactgtattttatttatttttaaattttagattcagaggtgcacgtgcggttttt---ttcatctttttgtagagatgagctcttgccgtgttggccaggctggtctcgaactcctgagctcaagtgatcctcccacttcagcctcccaaagtgctgggattacaggcgtgagccaccacgcccagccAGTATTTTCTTTTCTAATTTGGAAACAGTTTTGAATGCAACTGACAAAGAACAATTTTGGGTATTTTTCCAAGTCTCAGGAAAAAAAAGGTGAGTCCCTACCAGGCACAGAGATTGTGTAAGAACGATCTTAGCATCCTCAGATGCAGAGCACGACCACCCTGGTGCACACATCCAACAGGAGGCGGGGGCACTCGGAGCTGCAGGCGGGAGCGGGAGGGCCGGGGAGGCAAACGAGGAAGAGCTACCGCGGCGAGTTCACGGCCCGTGGAGCAGCGCGGGCCGTGTGTCCCAAGGCACTATGGCTGCTGAGCGGACGTCTCCTTAGGGTTCTGCAGTGGATCTTGCCCCGCGCTGAAGCCCCACTGGGCCACACTGTCCATCCCAGGAAAAGTGGCTGATCCGCAGGCTCAAAGAGAACCACAGAAATGCTGGTCTCAGAGGGGCTGGGGCTAAGGCCCCCATGTCA s panTro1.chr6 160965918 3327 - 161576975 CTTCACTTTCCCTCCATATCACACCACACCTGTCTTCCCATTTTGCTATAAAGGCTTAGGATAattgtttttaatggttgccagagcatttcttctatggaaatatcattatgtatttaacttcgtatgaggtatttgggtcacttacaatttctgctattacattatgccccgatgcatatttttgggtgcatagctttttccataattagaattggaaggatagattctcatgaatgtgattgctggatgaaaggAGTGAAGACATTGGCAATTCCAGATGCGCACCGTCCCACGGCTTTCCAAAAGCACCTTGGCACTCCCAGCtcagccaccctaggcagcagctgtttattttacttaattggataaatgaagaaatgggaccctagagtc----ttttttttttttttgagaccgagtctcgctctgtcgcctaggctggagggcagtggcacagtcttggctcactgcaagccctgtctcctgggttcacgccattgtcctgcctcagcctcccgagtagctgggaccacaagcgcccgccactgcacccagctaattttttgtatttttagtagagacggggtttcaccacgttagccaggatggtctcgatctcctgacctcgggatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcccagcAGGACCCTACAGTCTTTAATTCATATTTCCTCATCACTAGAAGGGCTGGATAGTTCCCACTCTATTTGCTTATTAGTTGT----ATTCTTTTTTATAAAATGTGGATATTTTGCCTGTTTGTTTGGGAGTTAATGCtttatgttttttggaatcatggtctctctctgttgtccgggctggagtgcagtggtacaatcacagctccctgaagcctcaatttctaggctcacgtgagcctccttgcctcagcctcTATCATCAGAGCAGGCTGCTCGGTTATGGActcagagtgctgagattataggcgtgagccaccgtgcccaactCTTAATGCTTTTGTTCTCATTTTGTGTCAGCTTTATGTAACAAAGATTTCACACTGTCATCCTTATTGCAAATATTTTCCTAAGTCTATGTTCCTTTTATTTTGGTTCAAATGTATATAGTCAAATCAATGTCTTTGTAGATCCCCCATCCTCTCAAAGTTTAGAAATTATCCCTTTCTGTATGtttaaaataattaaaatttaaaaGGTATCTTCCCATAGAACTTTTGTAAATGAGAAATTTAAAAATTTCTCCTATTAAAAAATTGTTTTAATCCTtttatcttctgtttattacagtagtgcatgctcattagagaaagcttagaaaaacatagaaaaaaataaagaagaaaataaaaatcatctgtattccAAGGACATGATGTTGGAAATACTGTATTATATTTGAGGCTGTGCCCCCAATTCCCGAGAGCACCACACATGTGTGCGCTCAGATGGGGCTCAGAGAACATAATCATCATTGGGAAATGCAGTTTTCAAccagtcatggtggctcatggctg-taatcccagcactttgggagggtgaggtgggaagactgttccagcctaggagtttgagatcagcctgggcaacataaagagacctcatgtctac-aaaaatacaaaaattagccaggcgtggtggtgggtgcctgtggtcccagctactcaggaggctgaggcaggaggatggcttgagcccaggagttcaagactagcctggcagcatatatgaccccatttctagaaaaaaatacaaaagtagccaggtggcgtgtgcctacaatcccatctactcaggaggctaaggcagaaaaatcacttgatcccagaagtaaggggctacagtgagctgtgatcgtaccactgcactccagccttgatgacagcgtgagaccctgtctcaaaaaacaaacaacaaaaaaaCCCATGCAGTTTTATACCCAGCTCTTGACACTGAATGGCATACTGCAGTCTTCCTGCCTTTTAGTGAATGACAGGAGATGTGGGCCCAAAGAGATGTGTGTTCCAAGCTGCTCATCAGTTCCGCCAACAACCATAAGAAATGCTTCTGCAAAGAGGAAGAACAGATGGTGGAGAAGCCACCAGAGCTGCAGTAAATGCAAGTCCTGGCTTCACTGCAAGCCAAGTCTCTCGGGGTTTGTGTGCCCAATTTTCTGGACTGTGAGGTGAAGGCTGGAGTAATTTGGCGCAAGAGGTTGTTAGGGTTAACATTCAGTAAAAATCTGAAATGGAACACCCTGGGCCCCCATCCAAGAGGCCCGTGGGAGAGGGGCTGAGGGAGGCTCTGGAGTCGCTGCCTCGGGAGTtctctgtgctctgcctccttgtctgtgaaacagggtcacagttcccaccacacaggccggctgtgagggtagatgagctgacggccctaaggcttgcagagcagcgtctggcataaagtGTTTAACGCCCCGAGTGCACGTCAGCAATCGCCAGCtttgttttttgtttggttttagagacagggccttgctctgttgaccaggctggagtgcagtggtgcagtcacagctcactgaagcttcgaactcctgggctccagggatcctcccgcttcagcttcctgagtagctggggccacaggcgcacaccaccacgcctggctaactgtattttatttatttttaaattttagatgcagaggtgcacgtgcggtttttttcttcatctttttgtagagatgagcgcttgccgtgttggccaggctggtctcgaactcctgagctcaagtgatcctcccacttcagcctcccaaagtgctgggattacaggcgtgagccaccacgcccagccAGTATTTTCTTTTCTAATTTGGAAACAGTTTTGAATGCAGCTGACAAAGAACAATTTTGGATATTTTTCCAAGTCTCAGGAAAAAAAAGGTGAGTCCCTACCAGGCACAGAGATTGCGTAAGAACGATCTTAGTGTCCTCAGATGCAGAGCACGACCACCCTGGTGCACACATCCAACAGGAGGCGGGGGCACTCGGAGCTGCAGGCGGGAGCGGGAGAGCCGGGGAGGCAAACGAGGAAGAGCTACCGCGGCTAGTTCACGGCCCGTGGAGCAGCACGGGCCGTGTGTCCCAAGGCACTATGGCTGCTGAGCGGACGCCTCCTTAGGGTTCTGC-GCGGATCTTGCCCCGCACTGAAGCCCCACTGGGCCACACTGTCCATCCCAGGAAAAGTGGCTGATCTGCAGGCTCAAAGAGAACCACAGAAATGCTGGTCTCAGAGGGGCTGGGGCTAAGGCCCCCATGTCA a score=573.0 s hg17.chr7_random 538297 2 + 778964 CA s panTro1.chr6 160969245 2 - 161576975 CA s canFam1.chrUn 89122729 2 - 91062872 CA a score=20911.0 s hg17.chr7_random 538299 320 + 778964 CACACAGCACCCATGCGGCTAGA-CAT--CTAGATTCTGCAACAAAATCCAGACGTAT-TTAAGAAGCCAGGCTACAAAACAGGCCACGGAAAAGCACACTTTGAAGGTTTCACATGAAAGCGTGTGCCCGGGCCAAG--TGGAAGAGCTGCGTCCCAC--AGTCTTCA------------------------------ATGCGATGCTCCTTAAAATGCTGCTTCTCC---CCAGGCAAGA-GTGACTATTGGGTACTTTTAACAAC-ACGCTTCAGTGAACCACAGCTCAGCTGGTCGGCGCTGGTACCTGCTGAGCACCTGGGGGAGCAGGTGTGTAGCCTGAGTGGGGCCAGGCACGGC s panTro1.chr6 160969247 320 - 161576975 CACACAGCACCCATGCGGCTAGA-CAT--CTAGATTCTGCAACAAAATCCAGACATAT-TTAAGAAGCCAGGCTACAAAACAGGCCACGGAAAAGCACACTTTGAAGTTTTCACATGAAAGCGTGTGCCCGGGCCAAG--TGGAAGAGCTGCGTCCCAC--AGTCTTCA------------------------------ATGCGATGCTCCTTAAAATGCTAGTTCTCC---ACAGGCAAGA-GTGACTATTGGGTACTTTTAACAAC-ACGCTTCGGTGAACCACAGCTCAGCTGGTTGGCGCTGGTACCTGCTGAGCACCTGGGGGAGTAGGTGTGTAGCCTGAGTGGGGCCAGGCACGGC s rn3.chr12 16003270 297 + 46649226 CACAAAAGGCCTCCGAGGCTGGAGGGG--CTGAGTTTCACTGCAAAG--CAGACTTATGTCAAGAACACAAGCTGCAGAAGAAGCCATGGCACATCCTATTTTCGAGTCTTACCATGGAAGACATTTCTC---CTAGG--TTCAGAGGCTTATTCGTGT--GACCCCAA-----------------------------TATGTGAAAAGACCTGATGTGATGCTATCCTGAGCTATGCAGGACGTCACTCACAGGAAC----AAGAACTATGTCGGGGTCAAGGCCAGGTCAGGCGG-------------CTGCTGAG-----GATGCTGCAGCTGGG--GCCTGGCTGGGG-CAGGT-CGGT s canFam1.chrUn 89122731 288 - 91062872 CGCAGAACACCCGT-TGGCCATG-CAGCACTAAGTT---CAATGATGCTGAGGTGTATCTCAACA---CGGGCCACATGAGAGGCCATGACAAGGCCCAAACTTGAGGTTTAACATCAAA-CCCATACACCTGGCAGGCTTTGAGCAGCCATGTTACATAAAGTCTTGAAAAGTAATCTTCTTGGCATTTTTAAAGTTAACATTTTGGTTCTCAAACTGCTGGTTCCC----ATGGGCAGGA-GAGATG-------------AGTCAC---------------CCCACCTCAGCTGG-------------CTTGTGGCCCCCTGG----------GTCCAGCCTGGGCATGGT---------- a score=0.0 s hg17.chr7_random 538619 12 + 778964 ACGCCAGCTGTC a score=549.0 s hg17.chr7_random 538619 7 + 778964 ACGCCAG s panTro1.chr6 160969567 7 - 161576975 TCGCCAG s rn3.chr12 16003567 7 + 46649226 GCCCCGA a score=482.0 s hg17.chr7_random 538626 5 + 778964 CTGTC s panTro1.chr6 160969574 5 - 161576975 CTGTC a score=0.0 s hg17.chr7_random 538626 5 + 778964 CTGTC a score=1173.0 s hg17.chr7_random 538631 4 + 778964 GGGA s panTro1.chr6 160969579 4 - 161576975 GGGA s canFam1.chrUn 89123019 4 - 91062872 GGGA a score=391.0 s hg17.chr7_random 538631 4 + 778964 GGGA s canFam1.chrUn 89123019 4 - 91062872 GGGA a score=0.0 s hg17.chr7_random 538635 2 + 778964 CG a score=300.0 s hg17.chr7_random 538635 1 + 778964 C s panTro1.chr6 160969583 1 - 161576975 C s mm5.chr5 12643306 1 - 149219885 C a score=0.0 s hg17.chr7_random 538635 1 + 778964 C a score=207.0 s hg17.chr7_random 538636 1 + 778964 G s panTro1.chr6 160969584 1 - 161576975 G s mm5.chr5 12643307 1 - 149219885 A s rn3.chr12 16003574 1 + 46649226 G a score=1476.0 s hg17.chr7_random 538637 2 + 778964 GC s panTro1.chr6 160969585 2 - 161576975 GC s mm5.chr5 12643308 2 - 149219885 GC s rn3.chr12 16003575 2 + 46649226 GC s canFam1.chrUn 89123023 2 - 91062872 AC a score=2210.0 s hg17.chr7_random 538639 2 + 778964 TC s panTro1.chr6 160969587 2 - 161576975 TC s mm5.chr5 12643310 2 - 149219885 TC s rn3.chr12 16003577 2 + 46649226 TT s canFam1.chrUn 89123025 2 - 91062872 TC s fr1.chrUn 293208105 2 - 349519338 TC a score=121362.0 s hg17.chr7_random 538641 173 + 778964 ACCTGACTGTGCGACGATGACACTGAACTGCAGGAGCTCCGGCGAGTGTGCGGTCCAGTCAAGGTGCGACGCGGTCACCCGCTCCAGGAGGGGACCAATGTGCTTGCGGTAGAGGTCCTGGCAGCTGCTGACACCCTCCACCATGGCCAGTGAGTCCATCGTCTCCTGTGCCT s panTro1.chr6 160969589 173 - 161576975 ACCTGACTGCGCGACGATGACACTGAACTGCAGGAGCTCTGGCGAGTGTGCGGTCCAGTCGAGGTGCGACGCGGTCACCCGCTCCAGGAGGGGACCGATGTGCTTGCGGTAGAGGTCCTGGCAGCCGCTGACACCCTCCACCATGGCCAGTGAGTCCATCGTCTCCTGTGCCT s mm5.chr5 12643312 173 - 149219885 ACCTGCCTGGGTGAGGAGCACAGTGAACTTCAGCAACTGCACAGAGTGCACTGCCCACTCGCCATGCGAGGCTGTCAGCCGCTCCAGGAGTGCACCCACATGCTTGCGGTAGAGGTCCTGACTGCTGGGGATATCCTCCACCTCAGCCAGTGTGTCCATGGTCTTCTGGGCCT s rn3.chr12 16003579 173 + 46649226 ACCTGCCTGGGTGAGGAGCACAGTGAACTTCAGCAGCTGCACAGAGTGCACCGTCCACTCGCCATGAGAGGCTGTCAGCCGTTCCAGTAGTGCACCCAGATGCTTGCGGTAGAGGTCCTGACTGCTGGGGATATCCTCCACCTCAGCCAGGGTGTCCATGGTCTTCTGAGCCT s canFam1.chrUn 89123027 173 - 91062872 ACCTGCATGGGTGACTACCACAGTGAGCTGCAGCAGCTCCACGGAGTGGACAGTCCAGTCGTTCTGGGTCGCTGCCAGCCACTCCACAAGGGGGCCTATGTGTTCTCGGTAGAGGTCCTGCCTGCTGTTGACCTCTTGCACTGTGGCCAGAGCATCCATGGTCTCTTGAACCT s galGal2.chr14 16268083 173 - 20603938 ACCTGAGTGAGTTGCAATGACACCTAACTGCGATATTTCTGGAGAATAGCAGGTCCAACTGTCGTGTGACACTGAGACCCATTCCAGAAGCTGAAGGATATGCTGTTTGTAGAGATAAAGAAAACCATCCAATTGCTGCACTTCAGCTAACGAACACATTGTTTCTTCTGCCT s fr1.chrUn 293208107 173 - 349519338 ACCTGATTGTGTGACTACGGTCTGCAGCTGGAGTCTCTGTGGAGAGAAACAGGTCCAGGTGCTGACAGAGGCAGACATCCAGTCCAGCAGCTGGCCCATATGTTGTCTATAGAGCGACACCACAGAATCCAGGCCTTGCACCTTACACAAGAGTTGGACGGTCTCCAAAGCCT a score=2169.0 s hg17.chr7_random 538814 5 + 778964 GGAGG s panTro1.chr6 160969762 5 - 161576975 GGAGG s rn3.chr12 16003752 5 + 46649226 ACAAG s canFam1.chrUn 89123200 5 - 91062872 GTAGG s galGal2.chr14 16268260 5 - 20603938 AGAAA s fr1.chrUn 293208280 5 - 349519338 AAAGG a score=1364.0 s hg17.chr7_random 538819 14 + 778964 TTACAAGTCAGAGA s panTro1.chr6 160969767 14 - 161576975 TTACAAGTCAGAGA s canFam1.chrUn 89123205 13 - 91062872 -TGTGAATTACAGG s galGal2.chr14 16268265 14 - 20603938 GGAGAGGTGAGATA s fr1.chrUn 293208285 14 - 349519338 CGAGGAGGGAAAAA a score=1284.0 s hg17.chr7_random 538833 4 + 778964 CTGA s panTro1.chr6 160969781 4 - 161576975 CTGA s canFam1.chrUn 89123218 4 - 91062872 CTGG s galGal2.chr14 16268279 4 - 20603938 CTTA a score=39547.0 s hg17.chr7_random 538837 459 + 778964 GACAATTCCAACACTCAGGGCTCAAGCCTGCCTGCCTGCTGGGACTCACTATCCCCCTCACGC-GTAAGAACCACACAGG------------------CCGGGCCTGCCAGGA-----TAATCG-GGAGGGAGGCTGCCACAGGGAGCCCCGCCCAGGGTGCAGG--AGAGCGAGAGCCGCGGGTGCAGGGCGAGACCCTGATCCCGTTCACA-----CCAACGCCGTCTCTGCAGCGAATCATGAAGCAGGCA-CTGTGCA---------------CACTGGG-ATGCACACAGCACAGGTGGTCCTGGGGCTTACACGGACGT--GGTGTCCGCCTGGGCAGGCAGGGCTCCTCTGAG----------------GTGGTGAGGAGCAGAGAGGGGCGGGCAAGTGGCTTAAAGAGTTAAGCCCAGCAGACCAGACCTCCAGGTAAAAGT---------AACTGGGCAGACAGAGATGAT----AACCTTGGCCACCTTTTA-------CTTTTAGCT--GGCTGCTCTCCTTGGGGGCTTAGGAAC s panTro1.chr6 160969785 461 - 161576975 GACAATTCCAACACTCAGGGCTCAAGCCTGCCTGCCTGCTGGGACTCACTATCCCCCTCATGC-GTAAGAACCACACAGG------------------CCAGGCCTGCCAGGA-----TAATCG-GGAGGGAGGCTGCCACAGGGAGCCCCGCCCAGGGTGCAGG--AGAGCGAGAGCCGCGGGTGCAGGGCGAGACCCTGATCCCGTTCACA-----CCAACGCCGTCTCTGCAGCAAATCATGAAGCAGGCA-CTGTGCA---------------CACTGGG-ATGCACACAGCACAGGTGGTCCCGGGGCTTACACGGACGCTGGGTGTCCGTCTGGGCAGGCAGGGCTCCTCTGAG----------------GTGGTGAGGGGCAGAAAGGGGCTGGCAAGTGGCTTAAAGAGTTAAGCCCAGCAGACCAGACCTCCAGGTAAAAGT---------AACTGGGCAGACAGAGATGAT----AACCTTGGCCACCTTTTA-------CTTTTAGCT--GGCTGCTCTCCTTGGGGGCTTAGGAAC s canFam1.chrUn 89123222 508 - 91062872 GGAA-----AGCCCTCGGGGGGGGGG----------GGGGGGGACCCATCCTCATCATCAGACAGCGAGACCCACTGAGGCATGTGAGCGGCTAGTGACCAGGCCAACCTCAAACACCCAATCGTTGAGGAAGCATGACAAGAGGAGCC---CCTGGAGTGCCTGCTGGGGCTAGGACTGTAGGTGCTCATCTAA---CCGCCACTATGCACATGGCGTCAGTGCCGTGGGCACAACAGGTAACAAAACAGACAGACGTGCATTTACGAGATTCAGCCACTGTGCCCCCATTCAGCACA---AAGCCAGGGGCACGTAGGGAG----AGCAAGCTTCCTGGCAGGCCGCTCCCTTCTGGGGTCCTCAGCTCCCACTGTGGTGGG----AGAGCTGGGC-GTCAGCCAGCCCAATCTGTGAGG-------GAGCAGGGAGCAAGGTGGCAGCAGGGCACTGAACTGATCAGACAAAAACTATGCTGGCCCAAGGTCACCCTGCAACTGGGCTTTCCAGTTGAGACAACCACCCTCTGGGGGGGGGGGGT a score=8783.0 s hg17.chr7_random 539296 64 + 778964 AGAGGAAGGGCTGAGGCTCCCCGGTGGCCATTGCCCCAAGCCTGGAGTCTGAATCTGGGGCTAC s panTro1.chr6 160970246 64 - 161576975 AGAGGAAGGGCTGAGGCTCCCCGGTGGCCACTGCCCCAAGCCTGGAGTCTGAATTTGGGACTGC s rn3.chrUn 25647919 64 + 75822765 AAAGCAAAAGCTGAGGCTAGCTCCCTGCCGCTCTCCTGAGCCTAAGGTCTGCCCCTGAGTGTAC s canFam1.chrUn 89123730 53 - 91062872 GGGGGCAG----GAGACAGGTCTGTAGCCACCTCCC--AGCCTGCCTCCTGAC-----AGCTGC a score=8427.0 s hg17.chr7_random 539360 21 + 778964 CTGGCTTCGT-CCCCCATGACC s panTro1.chr6 160970310 21 - 161576975 CTGGCTTCCT-CCCCCATGACC s mm5.chr5 12646628 20 - 149219885 CTGGCTTCCT--TCCTGTGGCC s rn3.chrUn 25647983 21 + 75822765 CTGGCCTCCT-CCCCCATCTCC s canFam1.chrUn 89123783 22 - 91062872 CCAGCTTCCTTCTATTGTGTCC a score=0.0 s hg17.chr7_random 539381 2 + 778964 AG a score=504.0 s hg17.chr7_random 539381 2 + 778964 AG s panTro1.chr6 160970331 2 - 161576975 AG s mm5.chr5 12646648 2 - 149219885 TG s rn3.chrUn 25648004 2 + 75822765 AG a score=7298.0 s hg17.chr7_random 539383 89 + 778964 CAGGCAAAGACTTTGCTTTTGCTGGTACCTCAGGCCCTAACAGTGACA----GCATCTGCTGA-----GACACACGCCCCTTGGGAAGCTTGTTTTT---------------------A s panTro1.chr6 160970333 91 - 161576975 CAGGCAAAGACTTTGCTTTTGCTGGTACCTCAGGCCCTAACAGTGACA----GCGTCTGCTGA-----GACACACGCCCCTTGGGAAGCTTGTTTTT-------------------AAA s mm5.chr5 12646650 112 - 149219885 CACGCACAGCC-------TTGCTAGAACTCATAGTCCTATCAGTGACAAGCTGTCTTTGATGACATATGACACGTACTCTCTGCAAAGGTTTCTTCACAGAGAAGAATCTGAATAGAGA s canFam1.chrUn 89123805 74 - 91062872 CATGCATGTAC--------------TGTTTGTGGCCCTG-TGGTGATGAGCTGC--CTGCT-------GATACGTGCTCTGTGGAACAGTGGCTTTT---------------------A a score=16603.0 s hg17.chr7_random 539472 188 + 778964 GAGGCCCCAAGAAGGAAGGGGAGGGCAGCAG-CCTCCTCCACAC------CAGGTTCCCCATAGTA--------------CATTCAGGCCGTAAATCTC---CCAGAGAGAGA-ATCTGCCGAGAGGGGCTGTCCACAGAGACAGAA-TGGGAGGAGGAACTAAGTCTCAGCT---TCCAGAGAGG------------CAGACAGATACTGGGGCCTCCAGGGGCCCTA s panTro1.chr6 160970424 188 - 161576975 GAGGCCCCAAGAAGGAAGGGGAGGGCAGCAG-CCTCCTCCACAC------CAGGTTCCCCATAGTA--------------CATTCAGGCCGTAAATCTC---CCAGAGAGAGA-ATCTGCCGAGAGGGGCTGTCCACAGAGACAGAA-TGGGAGGAGGAACTAAGTCTCAGCT---TCCAGAGAGG------------CAGACAGATACTGGGGCCTCCAGGGGCCCTA s mm5.chr5 12646762 158 - 149219885 AAGTCCCCAACAAGAGAGGAAAAGG--------CCCCCTCAGGT------AGGGTTCCACA------------------------GGAACCTAAGCCTC---CTGCAG----------GCCCAGGGCGGT--------------------GGCTGAGAGCCTTACTCTGGGCTCACCCTGAAGAAGTAGCATCTGGCCCAGATGGTTATTGAGGCTCACAGGAATTCTA s canFam1.chrUn 89124100 195 - 91062872 GAGGCCCAGGAAAGGAGAGGAAGGGCAGAGGACCTCCTTGATATGGGGCACAGGTTCTATGAAGTGCCCAGGCACCTCTCCATCAGGCACATCATCCCCAGACCCCAGACAGAGGTGTGCCCACGGGGGT-------GGAGAGAGGACCAGGGGGAGAACCACATTCT--------TCTGGAGATG------------------GTCCCTGAGGCCCA-AGGGGAACTG a score=2374.0 s hg17.chr7_random 539660 18 + 778964 GAAGCCCATTAGAAGGTT s panTro1.chr6 160970612 18 - 161576975 GAAGCCCATTAGAAGGTT s canFam1.chrUn 89124295 14 - 91062872 GA----CATCAGAAGAAT a score=30102.0 s hg17.chr7_random 539678 318 + 778964 GGGGTTAAAAGATTTTTGGGCATAATggccaggtgcggtggctcatgcctatgatcccagccctttgggaggctgaggcaggtggatcacctgcagtcaggagcttgagaccaacctggccaacgtggcaaaaccttgtctctactaaaaatataaaaattagccgggtatggtggtgggcgcctgtaatcccggctactcaggaggctgaggcaggagaatcacttgaacctgggaggcagaagttgcagtgagccgagatcgcgccactgcactccagcctgggtgacagagcgagactccactgaagaaaaaaga s panTro1.chr6 160970630 318 - 161576975 GGGGTTAAAAGATTTTTGGGCATAATggccaggtgcggtggctcatgcctatgatcccagccctttgggaggctgaggcaggtggatcacctgcagtcaggagcttgagaccaacctggccaacgtggcaaaaccttgtctctactaaaaatataaaaattagccgggtgtggtggtgggcgcctgtaatcccggctactcaggaggctgaggcaggagaatcacttgaacctgggaggcagaagttgcagtgagctgagatcacgccactgcactccagcctgggtgacagagcgagactccactgaagaaaaaaGA a score=584.0 s hg17.chr7_random 539996 3 + 778964 TGA s panTro1.chr6 160970948 3 - 161576975 TGA s mm5.chr5 12647113 3 - 149219885 TAA a score=1645.0 s hg17.chr7_random 539999 11 + 778964 TTTTTGGGCAT s panTro1.chr6 160970951 10 - 161576975 -TTTTGGGCAT s mm5.chr5 12647116 11 - 149219885 AATTAAAGCTT s canFam1.chrUn 89124309 11 - 91062872 TTTCAAAGCTT a score=4078.0 s hg17.chr7_random 540010 50 + 778964 AAACAGGGAGCCCATGGGCGAGAAGTACTTCTG-AACGCTGTGCTGCAATG s mm5.chr5 12647127 50 - 149219885 AAATGCAGAGTCAAGGGGACAGAAATAACTCTA-AGAGCTGTGCTACACTG s canFam1.chrUn 89124320 51 - 91062872 AAACCCAGAGCTGAGAAAACAGAAATAGTGTTATAAAGCTGGCCTGTGATG a score=625.0 s hg17.chr7_random 540060 54 + 778964 AGAGCGGGAAATCACGG---TATCTTCTCTCGACTCAGTCACACATGCACATGCACt s canFam1.chrUn 89124371 56 - 91062872 AGA-TGGGAGATTATGACACTATCTTCTCTATAGGCTGTCAGTCACAGGCTGGAGCT a score=10595.0 s hg17.chr7_random 540384 124 + 778964 gattacaggcgtgagatgccacgcccagcGACATGTGCACTATTAAACCCTACTCAAGTGCGCAGGTTTAAAGGTTACGTCTTATTTCTTGTTTGCTTCTTTGCTGAAGACCCTAACATTAAAC s panTro1.chr6 160971335 123 - 161576975 GATTACAGGCGTGAGCTGCC-CGCCCGGCGACATGTGCACTATTAAACCCCACTCAAGTGCGCAGGTTTAAAGGTTACGTCTTATTTCTTGTTTGCTTCTTTGCTGTAGACCCTAACATTAAAC a score=17973.0 s hg17.chr7_random 540508 177 + 778964 AGCTGTCTCCACTCCCTGATGCCAGAATACACTGGCAGCTGGAGAGCTG---------------CCCCGAAGGCCGTTGCCCGGG-GACTCACCCGCAAGGTTCTCAAT--CCCTGGTCTTTGCTGGTCA------------------------AGCACAG--AGGGGATGCATAGGAGACAGTTCAC---------------------------CTCACTTAG--AGATG-----CCTTCCAGCTGTGAGCTCC s panTro1.chr6 160971458 201 - 161576975 AGCTGTCTCCACTCCCTGATGCCAGAATACACTGGCAGCTGGAGGGCTG---------------CCCCGAAGGCCGTTGCCCGGG-GACTCACCCGCAAGGTTCTCAAT--CCCTGGTCTTTGCTGGTCAGACATGTTTGAGGCCTGGGGCTCAAGCACAG--AGGGGATGCATAGGAGACAGTTCAC---------------------------CTCACTTAG--AGATG-----CCTTCCAGCTGTGAGCTCC s canFam1.chrUn 89124456 230 - 91062872 AGCTGTTGTCCCTCTGAGACATGACAATAAACGGGCAGCTGCAGGTTCTCTAGAATCCTTTACCCCCTGAGGGCCACCGCATGAGCGACTCATCCCAAATGTCCCACATGGTCCTCCACTATGCTAGTC-------------------------AGCTGAGTCAGGGGAGCCTGAGGCTTCAGTTTCCACAGCAGGAGGACTTCTGGATGGTGGTTCCATTTGGTCAGATGAGCACCTTCCCAGGCATGAGCTCC a score=-545.0 s hg17.chr7_random 540685 30 + 778964 GCTA-------GGTCAAGCAGCAG----CCACCACTGTCAG s panTro1.chr6 160971659 30 - 161576975 GCTA-------GGTCAAGCAGCAG----CCACCACCGTCAG s canFam1.chrUn 89124686 35 - 91062872 ATCACCCACACAGCAAAGTGGGGG----TTTCC-CTGTAG- s galGal2.chr14 16271304 34 - 20603938 GCAA-------GGAAATGCAGCAGAATACTACAGCGGTTTG a score=2940.0 s hg17.chr7_random 540715 3 + 778964 --CCT s panTro1.chr6 160971689 3 - 161576975 --CCT s mm5.chr5 12647447 3 - 149219885 --CCT s rn3.chr12 16007325 3 + 46649226 --CCT s canFam1.chrUn 89124721 3 - 91062872 --CCT s galGal2.chr14 16271338 5 - 20603938 TAGCT a score=117853.0 s hg17.chr7_random 540718 149 + 778964 TACCTTGTCCCTCAGGCCGGTAGCACCTGCGAGGGCCACTATTGTCAGCAGCACGTCCAAGAGCTGCAGGCTGGCCACGCCACAGTCCTCATGACACACAGACACCAGAGCCTGCACACACAGCAGCAGGCGCT--CCAGGTAGAGGTCCT s panTro1.chr6 160971692 149 - 161576975 TACCTTGTCCCTCAGGCCGGTAGCACCTGCGAGGGCCACTATTGTCAGCAGCACGTCCATGAGCTGCAGGCTGGCCACGCCACAGTCCTCATGACACACAGACACCAGAGCCTGCACACACAGCAGCAGGCGCT--CCAGGTAGAGGTCCT s mm5.chr5 12647450 149 - 149219885 TACCTTCTTCTCAAGACCCACGGCATCTGAGACTGCCATTATTGTCACCAGCACCTCCAGGAACTGCAGGCTGGCAGCTCGACAGTCTTCCTGACATACAGACAGCAGGGCCTGCACACACAGCAGCAGATGCT--CCAGGTAGAGATTCT s rn3.chr12 16007328 149 + 46649226 TACCTTCTTCTCAAGACTCACGGCATCTGAGACTGCCATTATTGTCACCAGCACCTCCGAGAGCTGCAGGCTGGCAGCACAGCAGTCTTCCTGACACACAGACAGCAGAGTCTGCACACACAGCAGCAGATGCT--CCAGGTAGCTATTCT s canFam1.chrUn 89124724 151 - 91062872 TACCTTGTCACTGAGGCCTGTGGCTCCGGAGAGCGCCATGATGGTCACGAGCACTTCCATGAGCTGCAAGCTGCATCCTCTGCAGTCTTCCTGGCACACGGAAACCAAAGTCTGCACGCAGAGCAGCAGGTGCTCCCCATGAAGCAGCTAT s galGal2.chr14 16271343 149 - 20603938 TACCTTCTCTTTAAGGTGCTCAGAATTTGGCACTGCCATCACTGCCACCAAAACTTTCATGAGTTGCAAGCAAATTCCTTGGCAGTCTTCCTGGCATACTTCGATCAATGCTCGTACACAACAAAGCAACTGTT--CCATGTAAAGGACCT s fr1.chrUn 293209391 149 - 349519338 TACCTTGTCACTGAGTTGTGGGTCCACTGAGAGGCTCTGGACCGTGATCAGCACCTGTAACAACTGTAGGCTGACCGACCCGCAATCTGAATCACAATGATGCAGCAGCACATCTATGCAGGCCAAGAGCTGAC--GCAAGTACATCACCT a score=6720.0 s hg17.chr7_random 540867 6 + 778964 GGAAGA s panTro1.chr6 160971841 6 - 161576975 GGAAGA s mm5.chr5 12647599 6 - 149219885 GGAAGA s rn3.chr12 16007477 6 + 46649226 GGAAGA s canFam1.chrUn 89124875 6 - 91062872 GAAGGA s fr1.chrUn 293209540 6 - 349519338 GGGAGA a score=628.0 s hg17.chr7_random 540873 2 + 778964 GA s panTro1.chr6 160971847 2 - 161576975 GA s mm5.chr5 12647605 2 - 149219885 CA s canFam1.chrUn 89124881 2 - 91062872 AA s fr1.chrUn 293209546 2 - 349519338 GA a score=701.0 s hg17.chr7_random 540875 7 + 778964 CCGGCAG s panTro1.chr6 160971849 7 - 161576975 CCGGCGG s mm5.chr5 12647607 7 - 149219885 ACAGTGG s canFam1.chrUn 89124883 7 - 91062872 AAAGGAG a score=1222.0 s hg17.chr7_random 540882 6 + 778964 CACCGT s panTro1.chr6 160971856 6 - 161576975 CACCGT s canFam1.chrUn 89124890 6 - 91062872 TACTGT a score=113875.0 s hg17.chr7_random 540888 1235 + 778964 CAGAGCTtggtacaatttggtcgtgtccccacccgaatcccatcttgaactgtagctcccataatccccacgtatcctgggagggaccctgtgggagggaactgaatcatgggggtgggtctttcccgtgctgttctcttgatattaagtctcacgagatctgatgttagtataaagggcagttcccctgcacactctctcgcctgccgccacgtaagacgtgactttgctcctcctttgccttccaccatgatggtgaggcctgcacagccatgtggaactttgagtccattaagcctctttttctttataaattacccagtctgtggtagatctttattagcgacatgagaatggactaatacaGGGCTCCCGCTCCGGCCCCAGTGTCAGGGCCGACAGAGCCCGCCCGGGGCTCCTAGTCTACGGCTCACGAGGGGCAGCAGCCATGGGAGAGCCCTTGCAGGGAGAGCCCCCAGGCGCTGGAGGTAGGGTGCCGGCATGTCAACCATAAAAGGGCGTGCTTGTTGATGGGAAAACTGAACACAGACTGGGAGCTAAGGAATCTGTGCTTATTTTGTGAAATGTGAACAGGCACTTGAGCTATGTGGTGGAGAAGCTGCGTTAGTGATGCACACGGCACCTGTGAGGGAAATGACGGCGCACTGCATTATCTGCTTTACAACATGCCCAAGTTCTCCCCGCCCTCCAAAGTTAAAAAGAAAAGTGGCCCCAGGCAGGCAGAACACGCATGCCAAGGGCTGGTCAGCGCTGAAGCTGGCAGTCGCTCTGCTGCCTGCCCCTCTTCTGTGCATTTTTGAGCTTTTCTATAACACCAAGTTTTAAGACAAATAAAATTCTATGGCTTAACATGTTTACTGATTGACGGGGAGGTGGAGTCTCAGCTCTGCACCTACGGCTGCGCTGGATGAATGGCTTCCCCTCCCGGCTCCAGCCTCATCCACTGTGAATCAGCCAGGCTCTGAAGCCCGCAACACAGCAGGCGTGTGCTGGACCCAAGAATTCCTAAGGCTTTGCGTGTGCTTACTTCTTTCTAAATAAATTTTAACttattttttagagacagggtcttgctctgtcgcccaggctggagtgcagtggtgcaatcgtggctaactgcagtctcaaactcctagccttaagtgatcctcctgccgtggcctctcaaagtgctgggatcatagataagaaccaccacgcctggcCTGtattta s panTro1.chr6 160971862 1235 - 161576975 CAGAGCTtggtacaatttggtcgtgtccccacccgaatcccatcttgaactgtagctcccataatccccacgtgtcctgggagggaccctgtgggagggaactgaatcatgggggtgggtctttcccgcgctgttctcttgatagtaagtctcacgagatctgatgttagtataaagggcagttcccctgcacacactctcgcctgccgccatgtaagacgtgactttgctcctcctctgccttccaccatgatggtgaggcctgcacagccatgtggaactgtgagtccattaagcctcttttcctttataaattacccagtccgtggtaggtctttattagcgacatgagaaccgactaatacaGGGCTCCCGCTCCGGCCCCAGTGCCAGGGCCGACAGAGCCCGCCCGGGGCTCCTAGTCTATGGCTCACGAGGGGCAGCGGCCGTGGGAGAGCCCTTGCAGGGAGAGCCCCCAGGCACTGGAGGTAGGGTGCCGGCACGTCAACCATAAAAGGGCGTGCTTGTTGATGGGAAAACTGAACACAGACTGGGAGCTAAGGAATCTGTGCTTATTTTGTGAAATGTGAACAGGCACTTGAGCTATGTGGTGGAGAAGCTGCGTTAGTGATGCACACGGCACCTGTGAGGGAAATGACGGCACACTGCATTATCTGCTTTACAACACGCCCAAGTTCTCCCCGCCCTCCAAAGTTAAAAAGAAAAGTGGCCCCAGGCAGGCAGAACACGCATGCCAAGGGCGGGTCAGCGCTGAAGCTGGCAGTCGCTCTGCTGCCTGCCCCTCTTCTGTGCATTTTTGAGCTTTTCTATAACACCGAGTTTTAAGACAAATAAAATTCTATGGTTTAACATGTTTCCTGATTGACGGGGAGGTGGAGTCTCAGCTCTGCACCTACGGCTGCGATGGATGAATGGCTTCCCCTCCCGGCTCCAGCCTCATCCACTGTGAATCAGCCAGGCTCTGAAGCCCGCAACGCAGCAGGCGCGTGCTGGACCCAAGAATTCCTAAGGCTTTGCGTGTGCTTACTTCTTTCTAAATAAATTTTAACTTAttttttagagacagggtcttgctctgtcgcccaggctggagtgcagtggtgcaatcgcggctaactgcagtctcaaactcctagccttaagtgatcctcctgccgtggcctcccaaagtgctgggattatagataagaaccaccacgcctggcCTGtattta a score=35343.0 s hg17.chr7_random 542123 313 + 778964 cttcttataacgtccctctaatgtctattttatgtatgtttcataaagtacagag----tgagtcaggaccgtggccatgtaatttaaacacgtgatttatcaacagtgtacatatattggaggcctatgcttaaaaactgtttttactaatgggggtgcaagttcaaagaagtttggtaattattTGGCTAGACAATGGGTTGGTTCTAAATTTCCTAATCAGCTCTAAAACTCTAAGCCTCATTCCCCACTGACGTAAATCATGGAAGACTAAACAAAACACTCCCACTGTACTACAGCAGCGTTCTGTCCTTGC s panTro1.chr6 160973097 313 - 161576975 cttcttataacgtccctctaatgtctattttatgtatgtttcataaagtacagag----tgagtcaggacagtggccatgtaatttaaacacgtgatttatcaacagtgtacatatattggaggcctatgcttaaaaactgtttttactaatgggggtgcaagttcaaagaagtttggTAATTATTTGGCTAGACAATGGGTTGGCTCTAAATTTCCTAATCAGTTCTAAAACTCTAAGCCTCATTCCCCACTGACGTAAATCATGAAAGACTAAACAAAACACTCCCACTGTACTACAGCAGCATTCTGTCCTTGC s canFam1.chrUn 89125648 229 - 91062872 CTTCTCAT-ACGTCCCTCC-ATGTGTGCCTCACGCATGTTTCACAAAGGACAGAGAGGATGGGACAGGAGCACGAC---------------------------GCAGAGGGCA------GGAGGTGTGCACTCAGG---CGGTTTCACTAATGGGA--ACAAGTCCAAA-------GGCAATT-------------CTGGAGGAGTTCT----------------------------GGGCTCATGCACAAATGATATAAATCATGAGATTTCAAACAAAGAATTCACACTGGATCACAGAGGAGTGTGGTTCACGC a score=11698.0 s hg17.chr7_random 542436 170 + 778964 ACCCCGGCCCCGCCCTGACCCACAGAAGACACAGAGCTGCATGGCTCCATCTCCCTCGGAGCTGGAGGAGCCGCGCGGCCCCGTCTCCCTCAGAGCTGGAGGAGCCGCGCGGCCCCGTCTCCCTCGGAGCTGGAGGAGCCGTGTGGCCCTGTCGTGGCCCCAACTCCCAC s panTro1.chr6 160973410 136 - 161576975 ACCCCGGCCCCGCCCTGACCCACAGAAAACACAGAGCTGCATGGCTCCATCTCCCTCGGAGCTGGAGGAGCCGCGCGGCCCCGTCTCCCT----------------------------------CGGAGCTGGAGGAGCCGTGTGGCCCTGTCGTGGCCCCAACTCCCAC a score=83252.0 s hg17.chr7_random 542606 797 + 778964 AGAAGCCACAGATTTGTTTTTATTCCAT-TCCTGATTTTTCCCACAGCCCAATTTCTCTAAGGCCT------GTACTAACTGGCTGACTTCTGAGGACAATATCT-GGCTAGTTTCTAGAATGACCTGTCATGTACATTTCAGGAGCGATCATCTTTTCGGTTAAAATCAAAAGGCAGGTGCGTTTAGAAGACA-CAGCCCCTCCTGGCTGACCACACCTCCAAGCACAGGAACAAACAGGGAATCAGGCATCCTTTGCAGCAAGCACCACCCTCCTGCCACGAACGCAGCACCGTCTCTGAGGAAGTGACAAGACTTCACATTTATAGATTTCTCTATATTTGACCAGACAATTTTCAGTGTCTGCCTACATACAACGCACACACACAGAACGAAAAAGAAAA--AAGATACAGCAGGAAATAATTCTCAGTATTTTTTGAAATAC----TATTTCAAACATTGTTTTCTGAAACAATGTTATCTAAGACTGCAAAGGTTTTTAATTCAGAAAAGCACAAGAGACTCCTATTTCAACAATGGCAATGGCATCCCACAACTGCTGGCTTCCCTGTGTGAGAAGCAAATCGGTGAGTTACCC---------------ATTTCCTCACTCTAGACACCTGTCCTA----AACTCCTTCCCAGG--AGACTCCAGTTCCCGTCTGTCGAGCTCTAGGGGACCTACTGGGCCCGAGACACCT--GGAAGTACCTACTGCTAAAGCCAGATTTCCTGTGAACCCCAGGGCAG--GGAGTGAAGCC------AGGCTCAGTTTAGAATACATTTACACGGACTTCTCTGTTTAAACACGAGCTTTTAAA s panTro1.chr6 160973546 801 - 161576975 AGAAGCCACAGATTTGTTTTTATTCCAT-TCCTGATTTTTCCCACAGCCCAATTTCTCTAAGGCCT------GTACTAACTGGCTGACTTCTGAGGACACTATCT-GGCTAGTTTCTAGAATGACCTGTCATGTACATTTCAGGAGCGATCATCTTTTCGGTTAAAATCAAAAGGCAGGCGCGTTTAGAAGACA-CAGCCCCTCCTGGCTGACCACACCTCCAAGCACAGGAACAAACAGGGAATCAGGCATCCTTTGCAGCAGGCGCCACCCTCCTGCCACGAACGCAGCACCGTCTCTGAGGAAGTGACAAGACTTCACATTTATAGATTTCTCTATATTTGACCAGACAGTTTTCAGTGTCTGCCTACATACAACGCACACACACAGAATGAAAAAGAAAA--AAGATACAGCAGGAAATAATTCTCAGTATTTTTTGAAATACTGAGTATTTCAAACACTGTTTTCTGAAACAATGTTATCTAAGATTGCAAAAGTTTTTAATTCAGAAAAGCACAAGAGACTCCTATTTCAACAATGGCAATGGCATCCCACAACTGCTGGCTTCCCTGTGTAAGAAGCAAATCGGTGAGTTACCC---------------ATTTCCTCACTCTAGGCACCTGTCCTA----AACTCCTTCCCAGG--AGACTCCAGTTCCCGTCTGTCGAGCTCTAGGGGCCCTACTGGGCCCGAGACACCT--GGAAGTACCTACTGCTAAAGCCAGATTTCCTGTGAACCCCAGGGCAG--GGAGTGAAGCC------AGGCTCAGTTTAGAATACATTTACACGGACTTCTCTGTTTAAACACGAGCTTTTAAA s canFam1.chrUn 89125907 738 - 91062872 GGAAGC--CAGACTAGTGTTTAATTCACATTCTCACTTGTTCCATGCCCCGATCTCTTTTAGGCCTAGGTGGGCAGTCACCAAGTG---TCTGAGGACATGGTTTCAGCTCATCTCCAGAACGGCCTAGAGTAACCACTGACAGAGCGTCACTCTCAGCTCCTGAGAT------GCATGC---------CGACATCAGCTCAGGCTGGCTGTCTTGGGGT----GCACTGGACCTTGCAAGGAGCT--GCGTGCTTTTCTACATGTG---CCCTTCTGTAGGAAGTGTGGCACCATCTCTGGGAATCTT---GGCCTTGGCATTCACAGATTTGTTTATATCAAAGCAGAGAACATTCCCCTCCCCTCCACCTGCACCTC--------------AAGAGGGAGACCAAGGCACAGCGGAGGCGAGTTTCCA----------AAATGA----CATCTTAGCTCCTG-CTCCTGAA--AGTGTCATCTGAGGTTGTCGAAACTTT--ATGGCAGAAAGTGCTAGAGGCTGACATTTCTACGGTGACCACGCCCCTGCACTCATCATGGTTTGTGTTTGTTCAACAGGAATAAATGAGTTACCCTTACGGTATCAAACAATTTCCTCAGCTCAGTTACATGTCACAAAACAAATATTTCAAAGGAAAGGATCGGATTCCC-TCAGCTTAGCCCCAGGTGCGGCGCT-GGCCAGACACACCTGGGGAGGCACCTGCCACTA---CCAG-----------GCCCTGCAGCAGCCGGCATGCAGCCTCAGGGAGCCTCTGTCTG------------------------GTTGATGCTGGAGTTTCTACC a score=0.0 s hg17.chr7_random 543403 4 + 778964 ACAA a score=373.0 s hg17.chr7_random 543403 4 + 778964 ACAA s panTro1.chr6 160974347 4 - 161576975 ACAA a score=11711.0 s hg17.chr7_random 543407 82 + 778964 TTTCGGTTTGTTCTTGAAAGACATTTTCAACCTGTTCTCATAGCTACTGGAGAATAGCTGTGGGAAACATAATCGACTTCC-C s panTro1.chr6 160974351 83 - 161576975 TTTCGGTTTGTTCTTGAAAGACATTTTCAACCTGTTCTCATAGCTACTGGAGCATAGCTGTGGGAAACATAATCGACTTCCGC s rn3.chr12 16008939 60 + 46649226 TCTTGGTTTGTTCTT-AAAGAGGTTCT---TTTGTTTTTGTGACCA--------------TAAGAAAT----CCAACATCC-C s canFam1.chrUn 89126645 82 - 91062872 CTTCAGTTTTTTCTCAAAAGATGTCAGCAGCTGGTCCTCCCAGCTCCTGGGGAATGATGGCAGGAAGCTCATGCTGTTTCC-T a score=0.0 s hg17.chr7_random 543489 22 + 778964 AAATGACATGACACAAAGCCCG a score=2908.0 s hg17.chr7_random 543489 17 + 778964 AAATGACATGACACAAA s panTro1.chr6 160974434 17 - 161576975 AAATGACATGACACAAA s rn3.chr12 16008999 17 + 46649226 AAACTACTTAACATGAA a score=-421.0 s hg17.chr7_random 543506 5 + 778964 GCCCG s rn3.chr12 16009016 2 + 46649226 GT--- a score=320.0 s hg17.chr7_random 543511 113 + 778964 GCCGGCCGCGGGAAGAGCACAGGGGCGTGGGAAGAGCACAGAACCACGGGCCTGATTCTGA--CTGAGACC--TGAGTACCTTCACCCTTTCTTGCCAAAAATTTAAGTCTGTTAAG s rn3.chr12 16009018 96 + 46649226 ----------GGGGAAGCAGTGTGGAGCTGTCAACTTCCAAGTTCAAGGGCCT-----------TGAGCCCACTAAACACCTCTGCCCTTTCTTGCTAATAATTCAGATCTGGGAAG s canFam1.chrUn 89126727 89 - 91062872 TCCTGCTGCAGGGGAA----------------AAAGGACTGCATCTGGAGCCTTTGCCTAAAGTTGAGTGT--TCACTGCCT----------TTGCTGAATGTCTGAGTCTGTGAGG a score=219.0 s hg17.chr7_random 543624 6 + 778964 GAGTAA s rn3.chr12 16009114 6 + 46649226 AAGAAA a score=34786.0 s hg17.chr7_random 543663 388 + 778964 tcccagcactttgggaggccgaggtgggctgatcacttgaagtcaggagttcaagaccagcctggccaacatggagaaaccccgtctctactaaaaacacaaaaattagccgggtgtggtggtgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacctgggaggcggaggctgcagtgagccaagattgcgccactgcattctagcctgggtgacagagcaagactctgtcccaaaaagtaaataaataaaaataaataaaaaaaaattacccaggtgtggtggtgcacacctgtagtcccagtgactcaggaggctgaggtgggaggatcAACCTAAAACAAAAAAATAAAAACAAGAAAGGAGTG s panTro1.chr6 160975222 387 - 161576975 tcccagcactttgggaggccgaggtgggctgatcact-ggagtcaggagttcaagaccagcttggccaacatgaagaaaccccgtttttactaaaaacacaaaaattagccgggtgtagtggtgcatgcctgtaatcccagctacttgggaagctgaggcaggagaatcacttgaacccgggaggcggaggctgcagtgagccaagattgcgccaatgcattccagcctgggtgacagagcaagactctgtcccaaaaagtaaataaataaaaataaattaaaaaaaattacccaggtgtggtggtgcacacctgtagtcccagtgactcaggaggctgaggtgggaggatcAACCTAAAACAAAAAAATAAAAACAAGAAAGGAGTG a score=11162.0 s hg17.chr7_random 544051 65 + 778964 AAATGTACGTCTTGGGTTTTCACTGTGACTGGCTCCTTGGCCAAAGGGCCGACACACGTTCGCAG s panTro1.chr6 160975609 65 - 161576975 AAATGTACGTCTTGGGTTTTCACTGTGACTGGCTCCTTGGCCAAAGGGCCGACACACGTTCGCAG s canFam1.chrUn 89126816 64 - 91062872 AAATGGGCATCTCCGGTTTTCCCTATGGCTGGTTCCTTGGCCTGA-GCCTGGAACACATCTGATG a score=6475.0 s hg17.chr7_random 544116 84 + 778964 CCTGGAAGGTTGAGGCTGGCTTCCCAGGGGTCCCGTGTGACTGGACTTTGTCAGAAAGACGTCTCTGTTTGAAAGATTGTGATT s panTro1.chr6 160975674 80 - 161576975 CCTGGAAGGTTGAGGCTGGCTTCCCAGGGGTCCCGTGTGACTGGACTTTGTCGGACAGACGTCTCTG----AAAGATCGAGATT a score=10493.0 s hg17.chr7_random 544200 68 + 778964 AAATTTTTCCTCGATAAAA--CTGGAAGATGGGGAGCCAAATGCACA---------------ACTGTGGGATGACACAATTCCGT s panTro1.chr6 160975754 68 - 161576975 AAATTTTTCCTCGATAAAA--CTGGAAGATGGGGAGCCAAACGCACA---------------ACTGTGGGATGACACAATTCCGT s canFam1.chrUn 89127090 85 - 91062872 AAATTCGTCCTCAAAAAACCTCTGGAAGATGAAGAGCCAAATACATAATCTGAACTTCATGGATTAAGGGATTAAATTTTTCTGT a score=4644.0 s hg17.chr7_random 544268 29 + 778964 TTTCCTGTAACCAACATGGAGATGTGAAA s panTro1.chr6 160975822 29 - 161576975 TTTCCTGTAACCAACATGGAGATGTGAAA s canFam1.chrUn 89127384 29 - 91062872 TTTTCTATACATGACGCTAAAATATGAAA a score=0.0 s hg17.chr7_random 544297 4 + 778964 ACTA a score=91.0 s hg17.chr7_random 544297 1 + 778964 A s panTro1.chr6 160975851 1 - 161576975 A a score=602.0 s hg17.chr7_random 544298 3 + 778964 CTA s panTro1.chr6 160975852 3 - 161576975 CTA s rn3.chr12 16009843 3 + 46649226 CCA a score=28386.0 s hg17.chr7_random 544301 132 + 778964 CACTTTCTTTGCTATAAAGTTTGTGAGATAAGGATTTAG--GCACCTGTGCACATTTTCAAGTTATGCCCTTCTAGGAAAAAATGCTTCTGGCTTGCAAATCTGTATACAGAAATCAAAGGCATCCTCATAACC s panTro1.chr6 160975855 132 - 161576975 CACTTTCTTTGCTATAAAGTTTGTGAGATAAGGATTTAG--GCACCTGTGTACATTTTCAAGTTATGCCCTTCCAGGAAAAAATGCTTCTGGCTTGGAAATCTATATACAGAAATCAAAGGCATCCTCATAACC s rn3.chr12 16009846 128 + 46649226 CAATTTCCTTGCTGTAAAATTTGTAAGA----GATGTAGAAAAACCTGCTTAAGACTTCAAGCCACACCTTCCAGCGGGGGAATGTTCT--GCTAACCAATATGTAAATGGAAATCAAAGTCACTCTCAGAACC s canFam1.chrUn 89127413 129 - 91062872 TATTTTCTTTCCCATAAAATTTGT-AGATCTCTATTTAA--ACACGTGCACAAAATTTCAAATTTAGCCTTTCAGGAAACAGAGAGCTG--GTTCACAAATCTATGTAGAGGAATCAGAATCATTACCAGACCA a score=629.0 s hg17.chr7_random 544433 3 + 778964 CCT s panTro1.chr6 160975987 3 - 161576975 CCT s canFam1.chrUn 89127542 3 - 91062872 CCC a score=1271.0 s hg17.chr7_random 544433 146 + 778964 CCTCGTGGGTGAAGGAAAGTGGAGAACTGACACACATTCGATGATG-TGTTAAAAACGGGTTTTGGGAAAAGCTGAAGCATGGCTGAAATGCCATGAGCACGCGGCCCGG-------GCCCCTCCCCCGCTCCCTTCC-TTACCCCAGCTCCGTT s rn3.chr12 16009974 127 + 46649226 -------AGTCTAGGGGAACACACAGCTGACAGA---GCGGCAATT-TATC-TAGATGAGTTCTGGGAAACATGGACACCCAGTGGTGAGTGTATAAGCAC----------------GGTCCTTCCTCATTCCTTCCCAGGACTCCAGCCCTATT s canFam1.chrUn 89127542 139 - 91062872 --CCCTGAGT----AAAAATGCAGAATTCATGTGGGTTTGACAATTATGTTAAAAACAGGTTTCGGAAAAGGTGAAC----------CGTGTCAAAAGCACCGGGGTCAGGGAGAATGGCTCATCAACACTCCCCTCTGAGACCTCAGCCCCACC a score=100.0 s hg17.chr7_random 544436 1 + 778964 C s panTro1.chr6 160975990 1 - 161576975 C a score=-50.0 s hg17.chr7_random 544579 105 + 778964 TCCTTCCCTCTATGTATTCCAGGAACTGCTTACAGGTTTCTTAAAACAGTTTACAA--AAATG----ACTGTCAACAGCCCCACCTCTCGTTCTGAGGACGGAGAGGGAGC s canFam1.chrUn 89127681 86 - 91062872 TCCCACCTGCCACGT------------------------CTCATGCCGCCTTGCGAGCAGATGCACAGCTGT-GATGGGACCACCTTGTCACCTGATGCCGGAGAAGGATC a score=696.0 s hg17.chr7_random 544789 54 + 778964 CCTCCAGGGGTGAGCTGAGGCCCGCCCTGCATGGCACGGCCGCCTGGTGGGGGC s canFam1.chrUn 89127863 50 - 91062872 CCCCAAGTGCTGTCCCCAGGCCTGCGCCACAGGGGACAATCA----GGGGGCAC a score=51356.0 s hg17.chr7_random 544843 512 + 778964 --AGCCCTGTGTCCCAGA-AATATCTGGGGTGCTGAGTCCAACACACACACTGACAGGGACCACTCACCTTCAAATGAAAGCAAAGCCATCACCTCTTCTTCCATGGAATACAACTATGGATTATTCCAAACAATTGAGCCCAACTACCCAGGCTGTTCCAGCTTCTGAGCTCAAGGATTTGCTGCTCAATTTAAAATTAAACAAATGTCTCTGGCAAATCCTCAGCTGGGCTGTG---AGAAGCACAGATCGGAACGCCAGGCAGGGCTGATGGGGAACAGGCTGTCAGTGCCCCCTGAGGACGTGCGATCTGTGC--AGGTACCC-----TGGGGACTGGATGGGATGGTGGACGTGCGACCACGCTCCTCAGGGGTG-----GGATGACGTGGACCCCACATCTACCCCCAGCAGCATGGGCCAGAGGGTCCCGGCCATGGACGCCTCCTGAGTCATCAAACACGTGAACTGTGGT--GTGTGGCCAAGAAAGGGGCAGCA------ACG-----AATGTAAACGTGAGCGGCCGCCTGC s panTro1.chr6 160976091 514 - 161576975 --AGCCCTGTGTCCCAGA-AAGATCTGGGGTGCTGAGTCCAACACACACACTGACAGGGACCACTCACCTTCAAACGAAAGCAAAGCCATCACCTCTTCTTCCATGGAATACAACTATGGATTATTCCAAACAATTGAGCCCAACTACCCAGGCTGTTCCAGCTTCTGAGCTCAAGGATTTGCTGCTCAATTTAAAATTAAACAAATGTCTCTGGCAAATCCTCAGCTGGGCTGTG---TGAAGCACAGATCGGAACGCCAGGCAGGGCTGATGGGGAACAGGCTGTCAGTGCCCCCTGAGGACGTGCGATCTGTGC--AGGTACCC-----TGGGGACTGGGTGGGATGGTGGACGTGCGACCACGCTCCTCAGGGGTG-----GGATGACGTGGACCCCGCATCTACCCCCAGCAGCATGGGCCAGAGGGTCCCGGCCATGGATGCCTCCTGAGTCATCAAACACGTGAACTGTGGTCAGTGTGGCCAAGAAAGGGGCAGCA------ACG-----AATGTAAACGTGAGCGGCCGCCTGC s canFam1.chrUn 89127913 442 - 91062872 AGACCCCCGTTCCTTACAGAGGAGCAGGAGGGCCTAG--------------TGACTG-------TCACAGCCAAACAAAAACAAAGTCCTTATCTTTTTCTCAATTGCACCCAATTATAAATTGTTCCAAACGATTAAGCCTAGCTACCCAAACTGCT----------------------------TCGATGTAGAATAAAGCGA--GTATGTAGTAA-------------CTGTGTACAGAATCCCACACCCATTTCCCAGCCA-----------------TCTGCTTGCTTGTTCTGAGCACGTGATGACAATGCTGAGGTACACAAGTAAAGAGCCAGTTCGTGGTGATAGGCTGAGGACCAAG---AGCGGGGGTGGGAAAGGACGCTGTGGCCCCATAGCCCATCCCTCGC--CCTATCCCACACTGTCCTG--CACGGTGGC---------CACTGGGCACATGGAAGGTGGCTGGCATG----AAGCAGGACCTGCATTTTCCATGTGTTTAGTTTTAACATGAATGACCGCTGAC a score=3423.0 s hg17.chr7_random 545355 40 + 778964 AgctggggctggggctggggctggagctCTGCACAGCCCA s panTro1.chr6 160976605 40 - 161576975 AgctggggctggggctagggctggagctCCGCACAGCGCA a score=4859.0 s hg17.chr7_random 545395 53 + 778964 GGACG-AGG-------------CCCCGGAACAAGG-GCTATCAGCGAGGGCACTCCGGTTAC--------TGCAGG s panTro1.chr6 160976645 67 - 161576975 GGACGCAGGGCGTATCACGATACCCCGGAACAAGG-GGTATCAGCGAGGGCACCCCGGTTAC--------CGCAGG s canFam1.chrUn 89128382 61 - 91062872 --AGGCAGG-------------TCCCCAGACAAGATGGTGTCAGTGGTGGTACCCTGGCCGTGGGCCTTGTGCAGG a score=6588.0 s hg17.chr7_random 545448 148 + 778964 TGTTTCCGATGGCCCGGCCTGGCGGCACGGGGCGGACCCACAGACACGTCGCTGGGTGCTTCCGACAGCCCAGCCTGGCGGCACAGGGCAACCCACAGACATGTCATTACGATGGCTGACGGCCGGGCAGGGGAGGCTCCTCCTCTCC s panTro1.chr6 160976712 92 - 161576975 TGTTTCCGATGGCCCGGCCTG--------------------------------------------------------GCGGCACGGGGCAACCCACAGACATGTCATTACGATGGCTGACGGCCGGACAGGGGAGGCTCCTCCTCTCC a score=1333.0 s hg17.chr7_random 545596 22 + 778964 ACTCCCGCATCTC-CCAAGTGCT s panTro1.chr6 160976804 22 - 161576975 ACTCCCGCATCTC-CCAAGTGCT s galGal2.chr14 16273590 22 - 20603938 ACTGTCATGTTTCATTAAGATC- a score=2865.0 s hg17.chr7_random 545618 2 + 778964 CT s panTro1.chr6 160976826 2 - 161576975 CT s mm5.chr5 12650240 2 - 149219885 CT s rn3.chr12 16011342 2 + 46649226 CT s galGal2.chr14 16273612 2 - 20603938 CT s fr1.chrUn 293212834 2 - 349519338 CT a score=194839.0 s hg17.chr7_random 545620 226 + 778964 TACGTTTTCAGATGCCTGGCAGATGTGGGCCTGTGCCAGCTCTGTGGCGATGGCTGCCAGGTGCGGCTGGAGGGCTTCTCGGGGGCAACCCCGCATGGCGGAGGCCAGCACCAGGA----GGCC-----------GGAGGCAGAGGGCGTCTTCTTCAGCGTCGAT-AAGATCAGCTTCAGAAACACCTCAGGGCTGACAAACGTCCCGACGAGCTCTGCGGATCTGGTACACT--GCGAGAAA s panTro1.chr6 160976828 226 - 161576975 TACGTTTTCAGATGCCTGGCAGATGTGGGCCTGTGCCAGCTCCGTGGCGACGGCTGCCAGGTGCGGCTGGAGGGCTTCTCGGGGGCAACCCCGCATGGCGGAGGCCAGCACCAGGA----GGCC-----------GGAGGCGGAGGGCGTCTTCTTCAGCGTCGAT-AAGATCAGCTTCAGAAACACCTCAGGGCTGACAAACGTCCCGACGAGCTCTGCGGATCTGGTACACT--GCGAGAAA s mm5.chr5 12650242 226 - 149219885 TACATTCTCAGACCCCTGGCAGATGTGCTCCTGGGCCAGCTCTGTGGCTATGACTGTGACGTGTGGCTGGAGGGCATTCCGGGGGCAGCCCCGGATGACAGAAGCGAGGATCAAGA----GGCC-----------AGAGGCAGAGGGTGCTTTCTTCAGCATGGCT-AAGATCAGTTTCAGAAATACTTCTGGGCTGACAAAGGTGCCAATGAGCTCTGCGGCTCTTATGCACT--GCAAGAAA s rn3.chr12 16011344 226 + 46649226 TACATTCTCAGACCCCTGGCAGATGTGCTCCTGGGCCAGCTCTGTGGCTATGACCTTGAGGTGTGGCTGAAGGGCATTGCGGGGACAGCCTCGGATGACAGAAGCAAGGATCAAGA----GGCC-----------AGAGGCCGAGGGTGCTTTCTTCAGCATGGCT-AAGATCAGTTTCAGAAATACTTCTGGGCTGACGAAGGTGCCAATGAGCTCTGCGGCTCTCACGCACT--GCAAGAAA s canFam1.chrUn 89128577 226 - 91062872 TACATTTTCAGATCCTTGACAGACATGGGGCTGGGCCAGCTCCGTGGCAATGACCTTCAAGTGTGGCTGGAGGGCCTCCCTAGGGCAGCCTCGGATGATAGAAGCGAGGACCAGGA----GGCC-----------GGCGGGGGAGGGTGACTTCTTCAGCGCGGAT-AAGATCAGCTTCAGAAACACTTCTGGGCTGACGAACACTCCAACCAGCTCTGCAGATCTGATGCACT--GTGAGAGA s galGal2.chr14 16273614 226 - 20603938 TACCTCCTCAGATCGCTGACAAACTCCAGCCTGTGACAGCGTGTCGCCAAGATCACTCAAATGAGGCTGCAAGATTTCTTTTGGGCTACCTCGAATCACTGCAGCGAGAACCATTA----AACA-----------AGATGGCTTAGGTGTTATCTCAAAGGCTGAT-GTGATTAATCTCAAAGACACTTTAGGACTGACAAACGTTCCGATCAATTCTGCTGCCTTCACACACT--GAAAAAAA s fr1.chrUn 293212836 240 - 349519338 GACCTGCTGATAGTCCTCGCAGACATCAGGCCGTACCAGTGTGGTGATGATTTGTTCAAGATGTGGCTTAAGGACGGGTGTGGGGCAGCCTTCCAAAATGGCAGCCAGTACCATGAGAGGGGCCCAGGGGTGAGAGGAAGAGTAGGGAGATGTC----ACATGACTCAACACCAGCTTAAGGAAGACCTCAGGAGGCACAAATGTTCCCAATATTTTAGCAGCTGCTAGGCACTAGACAGCAAA a score=-3732.0 s hg17.chr7_random 545846 10 + 778964 --GAAACATGAG-- s panTro1.chr6 160977054 10 - 161576975 --CAAACACGAG-- s mm5.chr5 12650468 6 - 149219885 --GAA----GGG-- s rn3.chr12 16011570 5 + 46649226 --GAA-----GG-- s galGal2.chr14 16273840 10 - 20603938 --AGAACAATAG-- s fr1.chrUn 293213076 10 - 349519338 GAGAA----GGGAA a score=4014.0 s hg17.chr7_random 545856 25 + 778964 --AAAACTCAGAGCC----AAACCCGAGGGT s panTro1.chr6 160977064 25 - 161576975 --AAAACTCAGAGCC----AAACCCGAGGGT s mm5.chr5 12650474 26 - 149219885 --AAGATGCAGAGTTCTGGAAAT---ATGGC s rn3.chr12 16011575 26 + 46649226 --GAGATGCAGAGTTCTGGAAAC---ATGGT s fr1.chrUn 293213086 25 - 349519338 GAGAGACACAGGG------GGACGCAAAGAT a score=7291.0 s hg17.chr7_random 545881 47 + 778964 --------CTCAGCC-GGGCTCCTGCTCTCGGCGCCGTGGCCTCCCAGACACAGCC--- s panTro1.chr6 160977089 47 - 161576975 --------CTCAGCC-GGGCTCCTGCTCTTGGCGCCGTGGCCTCCCAGACACAGCC--- s mm5.chr5 12650500 47 - 149219885 --------CACAGCCAGGGCTCCCACTGT-GGTGACTAGGCTTACCACACAGGGCC--- s rn3.chr12 16011601 45 + 46649226 --------CACAGCCAGGGCTCCCACG---GGTGACTGGGTTTACCCTACAGGGCT--- s fr1.chrUn 317993247 56 + 349519338 TTCTGTGACTCAGCT---GCTGTCGGCTCTGTCGCAACAGTCATCCACACACACACACT a score=2172.0 s hg17.chr7_random 545928 15 + 778964 GTGCACCAGACAGAG s panTro1.chr6 160977136 15 - 161576975 GTGCACCAGACAGAG s rn3.chr12 16011646 15 + 46649226 TCCCATCTGTCAGAG s fr1.chrUn 317993303 15 + 349519338 GCAGCTCAGACACAC a score=34613.0 s hg17.chr7_random 545943 401 + 778964 -CCCCGTGTTAG--GCAGAGTGAGTCCTTGGCACATGCT----------CAGAGCCCTCAGGAAAGGTACAAGGGTCCGGGTGTGGTCTCAGAACGTCCCTGAGGCCAGCGAGCCGGACAC-----GCCTCCCAGGCAGTGAAGTCTGGCCCAAAGG-ATGCTGTGTCCCAGCTGT-----GGGGTTCA-CCACACACCCCTCATCGGACAC---CAGTGACCCAACCTTCCCATCACTAAGCTGATCAATACACACCAGCCC-------CTCTGTACCGTGGAAGCCCACAGTGGATCACACACTCAC--CAGCCCCTCTGCACCGTGGGATTC-----CACAGTG-------GACACCACACACCAGCCC-------CTCTGCACCGTGGGATTCCACAGCGGATCACACACACAC--CAGCCC-------CTCTGCACTGTGGGATTCCACAGCGGATCACAC s panTro1.chr6 160977151 401 - 161576975 -CCCCGCGTTAG--GCCGAGTGAGTCCTTGGCACATGCT----------CAGAGCCCTCAGGAAAGGTACAAGGGTCCGGGTGTGGTCTCAGAACGTCCCTGAGGCCAGCGAGCCGGACAC-----GCCTCCCAGGCAGTGAAGTCTGGCCCAAAGG-ATGCTGTGTCCCAGCTGC-----GGGGTTCA-CCACACACCCCTCATCGGACGC---CAGTGACCCAACCTTCCCATCACTAAGCTGATCAATACACACCAGCCC-------CTCTGTACCGTGGAAGCCCACAGTGGATCACACACTCAC--CAGCCCCTCTGCACCGTGGGATTC-----CACAGTG-------GACACCACACACCAGCTC-------CTCTGCACCGTGGGATTCCACAGCGGATCACACACACAC--CAGCCC-------CTCTGCACCGTGGGATTCCACAGTGGATCACAC s fr1.chrUn 317993318 446 + 349519338 ACTGCAGCTCAGACACACACTGCAGCTCAGACACACACTGCAGCTCAGACACACACTGCAGCTCAGACACACACTGCAG--------CTCAGACACACACTGCAGC-------TCAGACACACACTGCAACTCAGACA-CACACTGCAGCTCAGATACACACTGCAGCTCAGATACACACTGCAGCTCAGACACACACTGCAGCTCAGACACACACTGCAGCTCAGAC-ACACACTGC--AGCTCAGACACACACTGCAGCTCAGACACACACTGCAGCTCAGACACACACTGCAGCTCAGACACACACTGCAGCTCAGATACACACTGCAGCTCAGACACACACTGCAGCTCAGATA-CACACTGCAGCTCAGACACACACTGCAGCTCAGATACACACTGCAGCTCAGACACACACTGCAGCTCAGACACACACTGCAGCTCAGACACACACTGCAGCTCAGAC a score=13127.0 s hg17.chr7_random 546344 169 + 778964 ACACAC--CAGCCC-------CTCTGCACCATGGGATTCCACAGTGGA-CAC-CACACACCAGCCCCTCTGCACCATGGGATTCCACAGCGGATCACACACACAC--CAGCCC-------CTCTGCACCGTGGGATTCCACAG--------------------------------------------------------------------------------------------CGGATCACACACACACCAGCCCCTCTGCACCATGGGATTCCACAGT s panTro1.chr6 161012602 263 - 161576975 ACACAC--CAGCCC-------CTCTGCACCGTGGGATTCCACAGCAGATCACACACACACCAGCCCCTCTGCACCGTGGGATTCCACAGCGGATCACACACACAC--CAGCCC-------CTCTGCACCGTGGGATTCCACAGTGGATCACACACACACCAGCCCCTCTGCACCGTGGGATTTCACACCGGATCACACACACACACCAGCCCCTCTGCACTGTGGGATTTCACACCGGATCACACACACACCAGCCCCTCTGCACTGTGGGATTCCACAGT s fr1.chrUn 317993764 180 + 349519338 ACACACTGCAGCTCAGACACACACTGCAGCTCAGACACACACTGCAGCTCAGACACACA---------CTGCAGCTCAGATACACACTGCAGCTCAGACACACACTGCAGCTCAGACACACACTGCAGCTCAGACACACACTG--------------------------------------------------------------------------------------------CAGCTCAGACACACACTAACCCTTGGCCACAACGAAAGTCCAGAGT a score=8805.0 s hg17.chr7_random 546513 94 + 778964 GGATCACACACACACCAGCCCCTCTGCACCGTGGGATTCCACAGCGGATCACACATACACCAGCCCCTCTGCACCGTGGGATTTCACACCGGAT s panTro1.chr6 161012865 94 - 161576975 GGATCACACACACACCAGCCCCTCTGCACCGTGGGATTCCACAGTGGATCACACACACACCAGCCCCTCTGCACCGTGGGATTTCACACCGGAT a score=93660.0 s hg17.chr7_random 546607 1066 + 778964 CACACACACCAGCCCCTCTGCACTGTGGGATTCCACAG---------------------------------------------TGGATCACACACACACCAGCCCCTCTGCACCGTGGGATTCCACAGCGGATCCCACACACGTCTCTCGTCCTCTCAGCCT------CACCCCCGTGTCTCTTGCTCTCCTGTAGGTTCCACAGAGAACTACAGACAATTTTAAATTCACGGTAGTTTTTGAAAAGCAGAAACATGACATGTAAATAACATGGAACCTG-GAACATTTACTTTAAATCAGTCACAATGATTTAGAtttttttgttttatctgagacagcgtctcattccgtcgcccaggctggagagtagtggcgcaatcatagctcactgaggcctcaaactcccgggctcaagcgatcctcccacctcagcctcccgggagctggaaccacaggtgcacgccactacgctgggctagtAACAGTGACCTGGACCACTAGAAGTAAAAGCTGCTGGCCAGGCTACCTTGCAATGGAATTTAAGGTTCAAGATGAGGATATTTTCAACTGAAATCTCAAGTCAAAGCTTTAGTTGTTCTCCTGAGCACTAGGAAGCATCCTTGTGAGGTGGGTGTGAAGTCCTCATGGTGGTGACTGTCAGCGCAGGGCGTGGCCCGGCCTAGTGAGGAGGAGAGGCCTGAGCATGGGACTCCCTCGTGCGTACCCAGTGGTGACGAGGCGATAACCAGCAGCCGAGTGTGGACAGGGAGTGAGAAAGAGGACTGCACCAGGGACACCACTCGCAGGACACCCGAAGCTGTGCCATCATCCCCCGTCTGGGTGCTCCCACAGCCCCTGCGAGGCCTGGAAGGGCCCTCAGGACAGTCCAGATGTCAATGCTGAACGCTGGGCATCTCGGTCCTGTGTCAGCAGCCCGGGCCCTGTCTGTCTGGTGCACGGCACGTCTACACAACACGTCTACACAACATGCACCTGGCACTGCACCCCCGAGTGTGCTTGAAAATGAGCATGAAGGGTTCACCCTCAACACGCTGTTACctacgggcacagaaaggagatcagttgttcccaggggctgggtgtggggAGGGCCTGC s panTro1.chr6 161013229 1115 - 161576975 CACACACACCAGCCCCTCTGCACCGTGGGATTCCACAGCGGATCACACACACACCAGCCCCTCTGCACTGTGGGATTTCACACTGGATCACACACACACCAGCCCCTCTGCACCGTGGGATTCCACAGCGGATCACACACACAACTCTCGTCCTCTCAGCCTGGATTTCACC---GTGTCTCATGCTCCCCTGTACGTTCCCCCTAGAACTACAGACAATTTTAAATTCACGGTAGTTTTTGAAAAGCAGAAACATGACATGTAAATAACATGGAACCTGCGAACATTTACTTTAAATCAGTCACAGTGATTTAGAtttttttgttttatctgagacagtgtctcattcggtcgcccaggctggagagtagtggcgcaatcatggctcactgaggcctcaaactcctgggctcaagcgatcctcccacctcagcctcccgggagctggaaccacaggtgcacgccactacgccgggctaGTAACAGTGACCTGGAGCACTAGAAGTAAAAGCTGCTGGCCAGGCTACCTTGCAATGGACTTTAAGGTTCAAGATGAGGATACTTTGAACTGAAATCTCAAGTCAAAGCTTTGGTTGTTCTCCTGAGCACTAGGAAGCATCCTTGTGGGGTGGGTGTGAAGTCCCCATGGTGGTGACTGTCAGCGCAGGGCGTGGCCCGGCCTAGTGAGGAGGAGAGGCCTGAGCATGGGACTCCCTCGTGCGTACCCAGTGGTGCCGAGGCGATAACCAGCAGCCGAGTGTGGACAGGGAGTGAGAAAGAGGACTGCACCAGGGACGCCACTCGCAGGACACCCGAAGCTGTGCCATCATCCCCCGCCTGGGTGCTCCCACAGCCCCTGCGAGGCCTGGAAGGGCCCTCAGGACAGCCCGAATGTCAATGCTGAACGCTGGGCATCTCGGTCCTGTGTCAGCAGCCCGGGCCCTGTCTGTCTGGTGCACGGCACGTCTACACAACACGTTTACACAACATGCACCTGGCACTGCACCCCCAAGTGTGCTTGAAAATGAGCATGAAGGGTTCACCCTCAACACGCTGTTACctacaggcacagaaaggagatcagttgttcccaggggctgggtgtggggagggCCTGC a score=8511.0 s hg17.chr7_random 547673 82 + 778964 GGCCCGGGGGTGAGGGGAACGCTGTCTTGG-CTACAGTACAGCCTCGGGCCCCGCACACCACAGAGGCGGGATCTTAAGCTCG s panTro1.chr6 161014344 82 - 161576975 GGCCCATGGGTGAGGGGAACGCTGTCTTGG-CTACAGTACAGCCTCGGGCCCCGCACACCACAGAGGCGGGATCTTAAGCTCG s galGal2.chr14 16275561 79 - 20603938 GATCCCAATGTCATGGGGAAGCTGCAGTGACCTATGGTACTGCC----ATCCCTCACACAATACACCCAGGCACACAACAAAG a score=3229.0 s hg17.chr7_random 547755 20 + 778964 AGTTACAGCTCCGCGAC-CAC s panTro1.chr6 161014426 20 - 161576975 AGTTACAGCTCCGCGAC-CAC s canFam1.chrUn 89129777 20 - 91062872 AGCTACAGCTCAACGAA-CGT s galGal2.chr14 16275640 18 - 20603938 AGT---ATCTTCATGAAGCAT a score=-733.0 s hg17.chr7_random 547775 11 + 778964 GACTGGAATAC s panTro1.chr6 161014446 11 - 161576975 GACTGGAACAC s canFam1.chrUn 89129797 11 - 91062872 GACCAGTAAAA s galGal2.chr14 16275658 2 - 20603938 GT--------- s fr1.chrUn 293213309 11 - 349519338 GAGTGGATTAC a score=274090.0 s hg17.chr7_random 547786 256 + 778964 ----GGCCACTTACACTTTGGACCACGGCTGCCTCCTCGTCGGTGCAGGCCTGGAACAGGGTCCGGAGGACGACCTCCAGGTGCTGCGTGGCGTGGTCCTCGGCATGCAGCAGCAGCACTGGGAGCAGCTGTGCCGACTTCACTCGGGTCCCCACCACCCAGTCGGTGATGTCGTGGCACAGGGCAGGGAGGATCTTGGAGAGGTTCCTGAAGACGAGCTCCCGGCAGCCCAGCACAGGGCGGCGCTCTGGAACGAAAAA s panTro1.chr6 161014457 255 - 161576975 ----GGCCACTTACACTTTGGACCACGGCTGCCTCCTCGTCGGTGCAGGCCTGGAACAGGGTCCGGAGGACTACCTCCACGTGCTGCGTGGCGTGGTCCTCGTCATGCAGCAGCAGCACTCGGAGCAGCTGTGCCGACTTCACTCGGGT-CCCACCACCCAGTCGGTGATGTCGTGGCACAGGGCAGGGAGGATCTTGGAGAGGTTCCTGAAGACGAGCTCCCGGCAGCCCAGCACAGGGCGGCGCTCTGGAACAAAAAA s mm5.chr5 12651713 256 - 149219885 ----GGACACTCACACTGCCGACCACAGCCTTCTCTTCATCGGTGCAGGCCTGATGCAGGGTTCTGAGGACGATCTCCAGGTGCTGGGTGATGTGGTCCTCTGCGTGCAGCAGCAGCACCGGCAGCAGCTGTGCTGCCTTCACCCGCGTCCCCACCACCCAGTCGGTGATATCATGACAGATGGCAGGAAGCACCTTGGAGAGGTTCCTGAAGACCAGCTCTCGGCAGCCCAGGCCAGGGCGGCTCTCTAGAGGGAGAAA s rn3.chr12 16012803 256 + 46649226 ----GGACACTCACGCTGCTGACCACAGCCTTCTCCTCATCGGTGCACGCCTGATGCAGGGTTCTGAGGACGATCTCCAGGTGCTGTGTGATGTGGTCCTCTGCATGCAGCAGCAGCACCGGCAGCAGCTGCGCTGCCTTCAGCCGGGTCCCCACCACCCAGTCGGTGATATCGTGACAGATGGCAGGAAGCACCTTGGAGAGGTTCCTGAAGACCAGCTCTCGGCAGCCCAGGCCAGGACGGCTCTCTAGAGGGGAGAA s canFam1.chrUn 89129808 256 - 91062872 ----GACAACTCACATTGCTGACCACAGCCCTGTCCTCATCAGCACATGCCCGCTGCAGGGTTCTGAGGATAACCTCCAGGTGCTGCGTGATGTGGTCTTCGGCGTGGAGCATCAGCACTGACAGCAGCTGTGCAGCCTTCACCCTGGTTCCTACTACCCAGTCGGTGATGTCATGACAGATGGCAGGAAGGATCTTGGAGAGGTTTCTGAAGACGAGCTCCCGACAGCCCAACACAGGGCGATTCTCTGGTGGTAGAAA s galGal2.chr14 16275663 256 - 20603938 ----AGATACTTACATTCCTAACCACCTCACTTTCTCTATCCAAGCACGCTTGATACAAAGCTCTGAGAAGCAGCTCCATGTGCTGTGTTATGTGGTCCTCTGCGTGCAGCAGTAACACATACAGAAGCTGGGATGCTTTCACTCTTGTGCTTTCAACCCAGTCTGTTAGATCATGGCAGAGACCTGGAAGGACTTTGGAGAGGTTCCTTGACACGAGTTCCCGACACCCCAGTCCTGGTCGAGTCACTGGAGAGGAAAA s fr1.chrUn 293213320 258 - 349519338 AGTGTAGCGCTCACATTTGTGATCACGTCCTTCTCTGTGTCTGTGCACGCCCGATAGAGAGTAGCTAAGAGAGGCTGCACATGCTGGGTGCTGTGCTCTTCGCTATGAAGCAGCAGCACGCAGAGCAGCTGAGATGTCCTGACCCGTGTGGCCACCATCCAGTCGTTCATATCGTGGGAAATGGCTGGCACCAGTTTGCCCAGGTTTGTCAACACAAGCTCTCTGCAGCCGAGGCCTGGACGCTCCACTAGAGGAAAA-- a score=-2001.0 s hg17.chr7_random 548042 3 + 778964 -GGG s panTro1.chr6 161014712 3 - 161576975 -GGG s mm5.chr5 12651969 3 - 149219885 -ATG s canFam1.chrUn 89130064 3 - 91062872 -GAA s fr1.chrUn 293213578 3 - 349519338 TAT- a score=-1059.0 s hg17.chr7_random 548042 3 + 778964 GGG- s canFam1.chrUn 89130064 3 - 91062872 GAA- s fr1.chrUn 293213578 3 - 349519338 -TAT a score=-580.0 s hg17.chr7_random 548042 3 + 778964 ---GGG s fr1.chrUn 293213578 3 - 349519338 TAT--- a score=1452.0 s hg17.chr7_random 548045 4 + 778964 AAAG s panTro1.chr6 161014715 4 - 161576975 AAAG s mm5.chr5 12651972 4 - 149219885 GGAG s canFam1.chrUn 89130067 4 - 91062872 TAAG s galGal2.chr14 16275919 4 - 20603938 ACAT s fr1.chrUn 293213581 4 - 349519338 AAAG a score=439.0 s hg17.chr7_random 548045 4 + 778964 AAAG s canFam1.chrUn 89130067 4 - 91062872 TAAG s galGal2.chr14 16275919 3 - 20603938 -ACA s fr1.chrUn 293213581 4 - 349519338 AAAG a score=150.0 s hg17.chr7_random 548049 4 + 778964 AAGA s galGal2.chr14 16275923 1 - 20603938 ---A s fr1.chrUn 293213585 4 - 349519338 AACA a score=320.0 s hg17.chr7_random 548049 3 + 778964 AAG s panTro1.chr6 161014719 3 - 161576975 AAA s galGal2.chr14 16275923 2 - 20603938 -AC s fr1.chrUn 293213585 3 - 349519338 AAC a score=154.0 s hg17.chr7_random 548049 3 + 778964 AAG s galGal2.chr14 16275923 2 - 20603938 -AC s fr1.chrUn 293213585 3 - 349519338 AAC a score=273.0 s hg17.chr7_random 548052 1 + 778964 A s panTro1.chr6 161014722 1 - 161576975 A s rn3.chr12 16013059 1 + 46649226 A a score=2206.0 s hg17.chr7_random 548053 3 + 778964 ATG s panTro1.chr6 161014723 3 - 161576975 ATG s rn3.chr12 16013060 3 + 46649226 ATG s canFam1.chrUn 89130071 3 - 91062872 ACA s galGal2.chr14 16275927 3 - 20603938 ACA s fr1.chrUn 293213589 3 - 349519338 ATG a score=7155.0 s hg17.chr7_random 548056 12 + 778964 AGAAATTCACAA s panTro1.chr6 161014726 12 - 161576975 AGAAATTCACAA s rn3.chr12 16013063 11 + 46649226 -GGAACCCACAA s canFam1.chrUn 89130074 12 - 91062872 GGAAGTTCACAA s galGal2.chr14 16275930 12 - 20603938 AACAATTCACAA a score=2841.0 s hg17.chr7_random 548068 11 + 778964 GCAAAACCTCA s panTro1.chr6 161014738 11 - 161576975 GCAAAACCTCA s rn3.chr12 16013074 11 + 46649226 AAACAGCTTCA s canFam1.chrUn 89130086 11 - 91062872 ATAAAACCTCC a score=10264.0 s hg17.chr7_random 548079 90 + 778964 -----------ACAACTCAAGTTACCGCACATCAC--ATTTAAGGGACACCTGTGAGTTTC-------AACCTCACCATTTCAAAACAAGTCTTGGGGTGGACGCAAAGC s panTro1.chr6 161014749 90 - 161576975 -----------TCAACTCAAGTTACCGCACATCAC--ATTTAAGGGACACCTGTGAGTTTC-------AACCTCACCATTTCAAAACAAGTCTTGGGGTGGACGCAAAGC s canFam1.chrUn 89130097 110 - 91062872 GTGAATCCTGGGAAAGCTGATTCATCATGTGTCCCTGGTTTAAGGGACACCTACATGTTTCATTTTGAAATCTTAAAAATGTAAACCACCTCTGAGAGCAGAAATGAAGC a score=39073.0 s hg17.chr7_random 548169 424 + 778964 TGACAAATGCCCC-GTCGTTCAGAACATTCACAGAggcggtgcacggctgcagtcctagccctgtggaggccaaggcaggtggatcactagagcccaggaagtcaagaccagcctgggcaacatggcaaagaccccatctctataaaaaacaggaagattagccaggtgccgtggtgcatgcctgtggtcccagctacgcaggagtctgaggtgggaggattgcgccacagcactccagcctgggtgacagagcgagaccctgtctcaaaaaacaaaCATTTAGAGCCACACAGAGATGCAAACAACACACTTGCCACACGTGCTGACGTGTATGATCAGAGAGACACGCCTGCGAAGCCGTCCCCCTATGATCAGAGAGACACACGCCTGCGAAGCCATCGCCATATGATGAGAGACACGCCTG s panTro1.chr6 161014839 425 - 161576975 TGACAAATGCCCCTGTCATTCAGAACATTCACAGAGgcggtgcacggctgcagtcctagcactgtggaggccaaggcaggtggatcactagagcccaggaagtcaagaccagcctgggcaacatggcaaagatcccatctctataaaaaacaggaagattagccaggtgccgtggtgcatgcctgtggtcccagctacgcaggagtctgaggtgggaggattgcgccacagcactccagcctgggtgacagagcgagaccctgtctcaaaaaacaaaCATTTAGAGCCACACAGAGATGCAAGCAACACACTTGCCACACGTGCTGACGTGTATGATCAGAGAGACACGCCTGTGAAGCCATCCCCATATGATCAGAGAGACACACGCCTGCGAAGCCATCACCATATGATGAGAGACACGCCTG a score=29262.0 s hg17.chr7_random 548593 372 + 778964 CGAAGCCGTCCCCCTATGATCAGAGAGACACACGCCTGCGAAGCCATCGCCATATGATGAGAGAGACACGCCTGCGAAGCCGTCCCCATATGATCAGAGAGACA------------------------------------------------------------------CACGCCTGCGAAGCCATCGCCATATGATGAGAGAGAGACGCCTGCGAAGCCGTCGCCATATGATCAGAGAGACACGCCTGCGAAGCCATCCCCATATGA---------------------------------TGAGAGAGACACGCCTGCGAAGCCATCGCCATATGATGAGAGAGACACGCCTGCGAAGCCGTCGCCATATGATCAGAGAGACACGCCTGCGAAGCCGTCCCCATATGAGAGAGACACGCCTGCGAAGCCGTCCCCATATGATCAGAGAGACAAGCCTGCGAAGCCATCG s panTro1.chr6 161015657 467 - 161576975 CGAAGCCGTCCCCATATGATCAGAGA----CACGCCTGCGAAGCCGTCGCCATATGATGAGAGAGACACGCCTGCGAAGCCGTCCCCATATGATCAGAGAGACACGCCTGCGAAGCCATCCCCATATGATCAGAGAGACACGCCTGCGAAGCCATCCCCATATGATGAGACATGCCTGCGAAGCCATCGCCATATGATCAGAGAGACACGCCTGCGAAGCCGTCGCCATATGATCAGAGAGACACGCCTGCGAAGCCGTCCCCATATGAGAGAGACACGCCTGCGAAGCCGTCCCCATATGATGAGAGAGACACGCCTGCGAAGCCGTCGCCATATGATCAGAGAGACACACCTGCGAAGCCGTCGCCATATGATCAGAGAGACACGCCTGCGAAGCCGTCCCCATATGAGAGAGACACGCCTGCGAAGCCGTCCCCATATGATCAGAGAGACACGCCTGCGAAGCCGTCG a score=89639.0 s hg17.chr7_random 548965 1003 + 778964 CCATATGATGACAGAGATACGCCTGTGAAGCCGTCCCCATATGATGAGAGA--CACGTCTGTGAAGCCGTCCCCATATGATCAGAGAGACATGCCTTCGAAGCCATCGCCATAT--------------------------------------------------------------------------GAGAGACACGGCTGCGAAGCCATCGGCATGGTGGGGGTGACAGCTGCGTCCTTCGCCCGGCTTCCTCTGCTCCTCTGCACTGCAGCCCCCAAGGCACCCCGGCACCCCTGGATCTGTCCCGTGACTGAGCTGCACTTTCTAGAGCCTGACACAAGTGGAAGCCTCTCGTTCACTCTCCTCCCTTCTCCGCTTCTTTCACTCTGCATCGTTTTCTGAGGCCCGCCTGTGCCCGCTCCTTTCTGAACCTGGGAAGTGGCCTGTTCTGGGGAGATGCCAGTTTAGTGCCCGCTCCTCTGTGGAGAAGCATTCAAATGGTGTCCAGGGcaagtctgtgtggcctgggctttcactgtgccgggacaaataccagctgtggaagggctgggccacagggaaggtgcacgtttaactgttttagaaactgtccaaccattttccaaagtgtttgagccagtccgcgctccttcccactctcagcggcacgcggtacgctcagtcttgaattgaaagcagtccgagaggcacagtggcatttccgtgtgcttttcctttgcattccccgatgactaacgacgccgagcgtcttcttcacaggcttgtttgccgcctatcttccctggtaaagggtctttccaaattgttttctgcccatttaaaaaaatggattgttttcctgctgagtttcaagagctcttcctatactctggagataaatccttacatacatcatctccaaacatctcagtctttggtttgtcttttcgttttttcaacaggcctttgaaaaagcagaagtgttcattttgatgaagtccacacattgctttaccctgttacagagcggtcttttgaggacgcacccagggaagcgtggcccggcccacggtcacg s panTro1.chr6 161016409 1079 - 161576975 CCATATGATGAGAGAGACACGCCTGTGAAGCCGTCCCCATATGATGAGAGAGACACGTCTGTGAAGCCGTCCCCATATGATCAGAGAGACATGCCTGCGAAGCCATCCCCATATCATCAGAGAGACACGCCTGCGAAGCCGTCCCCATATGATCAGAGAGACACGCCTGTGAAGCCATTGCCATATGAGAGAGACACGCCTGCGAAGCCATCGGCATGGTGGGGGTGACAGCTGCGTCCTTCGCCCGGCTTCCTCTGCTCCTCTGCACTGCAGTCCCCAAGGCACCCCGGCACCCCTGGATCTGTCCCGTGACTGGGCTGCACTTTCTAGAGCCTGACACAAGTGGAAGCCTCTCGTTCACTCTCCTCCCTTCTCCGCTTCTTTCACTCTGCGTGGTTTTCTGAGGCCCGCCTGTGCCCGCTCCTTTCTGAAGCTGGGAAGTGGCCTGTTCTGGGGAGATGCCAGTTTAGTGCCCGCTCCTCTGTGGAGAAGCATTCAAATGGTGTCCAGGGcaagtctgtgtggcctgtgctttcactgtgccgggacaaataccagctgtggaagggctgagccacagggaaggtgcatgtttaactgttttagaaactgtccaaccattttccaaagtgtttgagccagtccacgctccttcccactctcagcggcacgcggtacgctcagtcttgaattgaaagcagtccgagaggcacagtggcatttccatgtgcttttcctttgcattccccgatgactaacgacgctgagcgtcttcttcacaggcttgtttgccgcctatcttccctggtaaagggtctttccaaattgttttctgcccatttaaaaaaatggattgttttcctgctgagtttcaagagctctttctatactctggagacaaatccttacatacatcatctccaaacatctcagtctttggtttgtcttttcgttttttcaacaggcctttgaaaaagcagaagtgttcattttgatgaagtccacacgttgctttaccctgttacagagcggtcttttgaggacgcacccagggaagcgtggcccagcccgcggtcacg a score=10742.0 s hg17.chr7_random 550057 130 + 778964 GCAGTCTTTTGAGGATGCACCCAGGGAAGCGTGGCCCGGCCCGCGGTGACAAAGGCTTCGTCATCACTCTGTGGTCTTTTGAGGACGTATCCCGCGAAGTGTGGCCCGGCCCGTGGTCACGAAGGCTTCG s panTro1.chr6 161017437 130 - 161576975 gcggtcttttgaggacgcacccagggaagcgtggcccagcccgcggtcacgaaggcttCGTCGTCACTCTGCGGTCTTTTGAGGACGTATCCCACGAAGCGTGGCCCGGCCCACTGTCACAAAGGCTTCG a score=74577.0 s hg17.chr7_random 550248 803 + 778964 AAGGCTTCGTCATCACTCTGCGGTcttttgaggacgtatcccacgaagtgtggcccggcccactgtcacaaaggcttcgccctagctctgcggttctgggctttaccttcagatccctgacgcatctggggttaattttttgactccaagttcactttctggtgtatgagtgatcctatcatttacagtatccttattaaaagatgccattaaatggtctttgagccttcatcaagtcagtggtccgcgtgcgggcgcctgtttctggacgctctcgttctgctcatcggtctgaaagccaacaccacgtggccccatgactgtggttttgtgagtcttgcacccaggacctgctgccattcagcttcactcctccccagtgtttcggcagctgtgggtcctttgcacgcccacgagaatttcacaatcagtttgtcgatttctacagaaaagccttcagggactttgatGAAAAGATTCTGATCTTCAAAATTCAggccgggcacggtggctcatgcctgtaatcccagcactttgcgaggccaaggcaggcgggtcacctgaggtcaggagttcaagaccaccctgactaacatggtgaaaccccgtctctactaaaaatagaaaaaataagccggtcgtgctggcgagcgcctgtaatcccagctactcagaggctgaggcagcagaatcacttgaacccaggaggtgggggttgcagtgagccaagattacaccactgcactccagcctgggcgacagagtgagactccatctcaaaaaaaaaaaaaaaaaaaaaTTCA s panTro1.chr6 161017488 802 - 161576975 aaggcttCGTCGTCACTCTGCGGTCTTTTGAGGACGTATCCCACGAAGCGTGGCCCGGCCCACTGTCACAAAGGCTTCGCCCTAGCTCTGCGGTTCTGGGCTTTACCTTCAGGTCCCTGACGCATCTGGGGTTAATTTTTTGTCtccaagttcactttctggtgtatgagtgatcctatcatttacagtatccttattaaaagacgccattaaatggtctttgagccttcatcaagtcagtggtccgcgtgccggcgcctgtttctggacgctctcgttctgctcatcggtctgaaagccaacaccacgcggccccatgactgtggttttgtgagtcctgcacccaggacctgctgccattcagcttcactcctccccagtgtttcggcagctgtgggtcctttgcacgcccacgataatttcacaatcagtttgtcgatttctacagaaaagccttcagggactttgatGAAAAGATTTTGATCTTCAAAATTCAggccgggcacggtggctcatgcctgtaatcccagcactttgcgaggccaaggcaggcgggtcacctgaggtcaggagttcaagaccaccctgactaacatggtgaaaccccgtctctactaaaaatagaaaaaataagccggtcgtgctggcgagcgcctgtaatcccagctactcagaggctgaggcagcagaatcacttgaacccaggaggtgggggttgcagtgagccaagattacgccactgcactccagcctgggcgacagagtgagactccatctcaaaaaaaaaaaaaaaaaaaa-TTCA a score=10682.0 s hg17.chr7_random 551051 50 + 778964 GAACAACTGTAAAGATAGAAATGAAACCATGATATGTCAGGATTTAAAGG s panTro1.chr6 161018290 50 - 161576975 GAACAACTGTAAAGATAGAAATGAAACCATGATATGTCAGGATTTAAAGG s canFam1.chrUn 89133412 50 - 91062872 AAAAAAATCTAGAGATAGAAATGAAATCATGAGAGGTCAGAGTTTAAAGG a score=15771.0 s hg17.chr7_random 551101 171 + 778964 Gtctttttctatttttagagaaagggtctcactctgtcacccaggctggagtgcagtggta--cgatcacagctcactgcagcactgaccttctgggcttaagtaaccctcctgcctcggcctctcaaagtgctaagattacaggtgtgagccactgcatccaggctaaAGGG s panTro1.chr6 161018340 173 - 161576975 GTCtttttctatttttagagaaagggtctcactctgtcacccaggctggagtgcagtggtatacgatcacagctcactgcagcactgaccttctgggcttaagcaaccctcctgcctcggcctctcaaagtgctaagattacaggtgtgagccactgcatccaggctaaAGGG a score=5675.0 s hg17.chr7_random 551272 40 + 778964 TATGTTTTAATAAGAA---CAGCTTGTACCAGGACACCCCATT s panTro1.chr6 161018513 43 - 161576975 TATGTTTTAATAAGAAGAACAGCGTGTACCAGGACACCCCATT s canFam1.chrUn 89133462 42 - 91062872 TATGTTTTAGCAAAAC-AACAGTTTATACCACAGGATCTAATT a score=22248.0 s hg17.chr7_random 551312 118 + 778964 TTTAACCTTTTTCTGGTTATTTTTCTGTTTTT-ATCCTGTATTATGGAATTAGTTCC----------AAATAATTAAA---ATTCTGCTGGCTGTTTAAATGATC--------CTGTCATCATTTTGTAAAAAACAAAAA s panTro1.chr6 161018556 119 - 161576975 TTTAACCTTTTTCTGGTTATTTTTCTGTTTTTTATGCTGTATTATGGAATTAGTTCC----------AAATAATTAAA---ATTCTGCTGGCTGTTTAAATGATC--------CTGTCATCATTTTGTAAAAAACAAAAA s canFam1.chrUn 89133504 112 - 91062872 TTCAGTTTTTTTCCTGTTACTTTTCTACTTCT-ATGCTATATTAGAAAATTAGTTCC-----------AATGATT-------CTATGTTGGCTGTTTAAGTGAGC--------TTGT-ATAATTTTGCCAAAAGCAAACA s danRer1.chrNA 92545549 138 - 390413307 TTTAATGCTTAGCTTTTTATTTTAATGTGCTT-ATTTTGTACTATATAATTATTTTGTTATTGATAATAATAATTACAATGATAGTGATAGTTATTTTAAT-ATCACTAAGAACTATTAGTATTTATTAAGACTCAAAAA a score=611.0 s hg17.chr7_random 551430 3 + 778964 AGC s panTro1.chr6 161018675 3 - 161576975 AGC s canFam1.chrUn 89133616 3 - 91062872 AAC a score=137665.0 s hg17.chr7_random 551433 1485 + 778964 CAGGGTGCAAACACACCtctcttcgttttttttt--------gaaatgcagtctcgctctgtcatccaggctggagtgcaatggtgcgatctcagctcactgcaaccttcacctcctgagttcaggcaattctccattctcatgtctcagcctcctgagtagctggtactacaggtgcatgccaccacacctggctaagttttgtatttttagtagagatggggtttcaccatgttggccagcctggtcttgaactcttgacctcagTATTACAGGCATGCGCCACCACGCCCAGCTGCACCTTTCTTCCTGATGACGATCCGCTCTGGAAAGTTTGCAAAATGAGAGATGCGTGACCAGGAACAGCCGGGGAGGGGTCTGCTGACAGCTGAACAGAGCTTTGTGGGCACCTGGGCTTCTGGGTGTTTCCAAAGAAATACTGGCCGGTGCTGGGcaggggtacgcaaggcctggacacaggctgggactggtttaaggcctgttaggaactgggccccacagcaggaggtgagcagatggtgaaggagtgtgaccgcctgagctccacctcctgtcagatcagtggcggcatgagattctcaggggagggcaaaccctcctgtgaactgtgcgtgtgagggacctgggttacgtgctccttatgagaattgaatgcctcatgatctgaggtagaacaatttcaacctgaaaccaccctgctccctgccccacccatggaaaaattgtcttccacaaaaccagtccctggtgccaaaatggcaggggaccgctgGTAcagtcaagcgttgctgaacggtggggggtgcgttctgggaaacacgtcattgggtgatttcgttgccgtgtgaacgtactacagtgacgtacacaagcctagatggcgcagcctcctacgtgcctggctgtgcgatgcctgggctgtgcgatatagcctgtgaggctcctaggccacgaacctgtgcagcaggtgactgcactcaacacgcagaaactgtagcacagacagtgagtgagtgtttccaaacacagaaaaaggagaaacacaatgttactatcagaggggaccaccctcctccacgtggtccttatggactcaaacgctgttactcagcacatgCTTCTGAACATGGTTCTGAAGCCTGTTTTTCTATACTTAATATTATAGCAGACATAggctgggcaccgtggctcacacctgtaatcctagcactttgggaggccaaggcgggtggatcacctgaggccaggagttggagaccagcctgactgatatggtgaaaccctgtctctactaaaaacacaaaaattatccaggtgcggtggtgcgcgtctgtaatcacagctactcgggaggctgaggcaggacagtagttgcctgaatctgggaggcggaggttgcagtgagctgggatcgcaccactgcactccagcctgggtgacagagcaagtctgcc-tcaaaaaaagaaaaagaa s panTro1.chr6 161018678 1494 - 161576975 CAGGGTGCAAACACACCTCTCTTCGtttttttttttttttttgaaatgcagtctcgctctgtcatccaggctggagtgcaatggtgcgatctcagctcactgcaaccttcacctcctgagttcaagcaattctccattctcatgtctcagcctcctgagtagctggtactacaggtgcatgccaccacacctggctaagttttgtatttttagtagagatggggtttcaccatgttggccagcctggtcttgaactcttgacctcagTattacaggcatgcgccaccacgcccagctGCACCTTTCTTCCTGATGACGATCCACTCTGGAAAGTTTGCAAAATGAGGGATGCGTGACCAGGAACAGCTGGGGAGGGGTCTGCTGACAGCTGAACAGAGCTTTGTGGGCACCTGGGCTTCTGGGTGTTTCCAAAGAAATACTGGCCGGTGCTGGGcaggggtacgcaacgcctggacacaggctgggactggtttaaggcctgttaggaactgggccccacagcaggaggtgagcagatggtgaaggagtgtgaccgcctgagctccacctcctgtcagatcagtggcggcatgagattctcaggggagggcaaaccctcctgtgaactgtgcgtgtgagggacctgggttacgtgctccttatgagaactgaatgcctcatgatctgaggtagaacaatttcaacctgaaaccaccctgctccctgccccacccatggaaaaattgtcttccacaaaaccagtccctggtgccaaaatggcaggggaccgctgGTAcagtcaagcgttgctgaacggtggggggtgcattctgggaaacacgtcattgggtgatttcgtcaccgtgtgaacgtactacggtgacgtacacaagcctagatggcgcagcctcctacgtgcctggcagtgcgatgcctgggctgtgcgatgtagcctgtgaggctcctaggccacgaacctgtgcagcaggtgactgcactcaacacgcagaaactgtagcacagacagtgagtgagtgtttccaaacacagaaaaaggagaaacacaatgttactatcagaggggaccaccctcttccacgtggtccttatggactcaaacgctgttaCTCAGCACCTGCTTCTGAACATGGTCCTGAAGCCTGTTTTTCTATACTTAATATCATAGCAGACATAggctgggcaccgtggctcacacctgtaatcctagcactttgggaggctgaggcgggtggatcacctgaggccaggagttggagaccagcctgaccgatatggtgaaaccctgtctctactaaaaacacaaaaattatccaggtgcggtggtgcgcgtctgtaatcacagctactcgggaggctgaggcaggaaagtagttgcttgaacccgggaggtggaggttgcagtgagctgggatcgtaccactgcactccagcctgggtgacagagcaagtctgccctcaaaaaaagaaaaagaa a score=108482.0 s hg17.chr7_random 552918 748 + 778964 GTTCCTTCTTCTGTAACACCCCCGGCTAACTCAGAGTG--GGCCAATGCT------CGTGGGACCTTG-CTGGCTTCAAACAATGTTAACCAG-----CTTTTCCAGCCCATTTGCACAAC--GTAACGTTTCTGACAATTTCCATTCAAGCTTCCATCTTTCCAAACACATGGATGAAACACACAAGCAAAGCAGAATGGGTGCGAGCTCCAAGGCAGAACAGGAGAA---TGAAGGG----GGAAGGCTGTC-ACGTGGCA---GCGTTCATCCACAGGGAACCCTGCTCACTTCTAAGTCAGGCTTTAAGAAGAGCCAACTCTGTCCTCCTGTGTGAAAAGCTCTGGCCGGCCACTCACCAGCA--TCGAGACGCTTTCCTTTACGCTCAGGCATTGCCAAGGAAAACAATCTTAACAGAGGGATAATCTCAAAGCAGAAAGGACTCTGGAG-CCGCTGTCACCAAGCCAT-CTGCTGCTGGCGGCTGGCAGTGT------GATTGTCAGATACACACCAGGCGTGAACGTGTGCTTCCGTGTGAGAAGGGCACTCTGTTCAGGGAAATGACCGACTT-GAGGACGGTAAGTGGTGCCCTCCCAACCCTCCCAGCACGAAGCTTGGTTTTTAAGGCGGAG----GTTTCAGTGCTGTTAATGGAAACTTACGCTGTGTCTGCAAAGCTA-ACAACAAATTATATGG-TACGAATTATATTTCCACATGGTGTGTACCTTATTT-TCTTAGGAAA-CAGGAAAACTGGACTCTGA-TGAAACTTCAGATCCAG s panTro1.chr6 161020172 750 - 161576975 GTTCCTTCTTCTGTAACACCCCCGGCTAACTCGGAGTG--GGCCAATGCT------CGTGGGACCTTG-CTGGCTTCAAACAATGTTAACCAG-----CTTTTCCAGCCCATTTGCACAAC--GTAACGTTTCTGACAATTTCCATTCAAGCTTCCATCTTTCCAAACACATGGATGAAACACACAAGCAAAGCAGAATGGGTGCGAGCTCCAAGGCAGAACAGGAGAA---TGAAGGG----GGAAGGCTGTC-ACGTGGCA---GCGTTCATCCACAGGGAACCCTGCTCACTTCTAAGTCAGGCTTTAAGAAGAGCCAACTCTGTCCTCCTGTGTGAAAAGCTCTGGCCGGCCACTCACCAGCA--TCGAGACGCTTTCCTTTACACTCAGGCATTGCCAAGGAAAACAATCTTAACAGAGGGATAATCTCAAAGCAGAAAGGACTCTGGAG-CCGCTGTCACCAAGCCAT-CTGCTGCTGGCGGCTGGCAGTGT------GATTGTCAGATACACACCAGGCGTGAACGTGTGCTTCCGTGTGAGAAGGGCACTCTGTTCAGGGAAATGACCAACTT-GAGGATGGTAAGTGATGCCCTCCCAACCCTCCCAGCACGAAGCTTGGTTTTTAAGGCGGAG----GTTTCAGTGCTGTTAATGGAAACTTACGCTGTGTCTGCAAAGCTACACAACAAATTATATGG-TACGAATTATATTTCCATATGGTGTGTACCTTATTTCTCTTAGGAAA-CAGGAAAACTGGACTCTGA-TGAAACTTCAGATCCAG s canFam1.chrUn 89137769 758 - 91062872 CTACCCTTCTCCCCAGCACCCAGAGCTAGCTTGGGGGGGTGGGTAATGTTCCACACCATGGATCCTCATTTAGTTCCCCCCAGTGCAAATCCACACCCCATCCCCCATCTCTCTGCACAACGAGAAACTTTTCTGACAA------------CTCCCACCTCTCCAAATACTTGGATGAAACAGACAAGCAGAGCA-----GGTCTGAGCTCTCAAG-AGAGCACGAAAGCCCTGAAGGGCATAAAAAAGCGATCTACATCACAATGGCAGTTATTCAAACGGAACTCCGCTTATTTCTAAAATGGG---TAAAAAAACCCAACTCTATTCTCTTGTGTCAAAAGATCTGGCAAGCCATTCACCATTAAGAAGAGGTGCTTCCCAGTTCACTCAAGCGTCACCAAGGAAAACAGTTTTAACGGGAGGATAATTTC-CAGCAGAAAGGACTCCGGAACCCACTGTCATTACCCGATCCTGCTGCAGGCGGTTAG-AGGGCGCGACGGATGGGCAGAT-CTCTTCAAGCATGAACTTG-ACTTCTGCCTGAGAAGAGCACTTAGTTCAGTG-AGTGACTGACCTGGGGGACAGTCCATGACGCCCTTCCGATCTTCCTAACATGCAGCTAGGTTTTAAAAGCAGAGATTTATTTCCATGTGGGAACAGGAAACT-----TGCATTTGTCAAGCAA-ATGGCAAACCATGTGGAGACAGATGATG-TTCTATGCTACATGCACCTTGTTT-TCTGAGCAAAGCAGGGA---TGGGCTTTGATTTAGACTTCTGTCCCAG a score=11288.0 s hg17.chr7_random 553666 122 + 778964 GCCCATGTGAATTCCTTATTGATAGGTCATTACCTCTGAGCACCGTCTGCATTAGCAGTGGTCTGAAAATATTACCGAACTTTGCCTGTTCACGCACTCGGCAACCCAACCACACGGTTGGA s panTro1.chr6 161020922 122 - 161576975 GCCCATGTGAATTCCTTATTGATAGGTCATTACCTCTGAGCACCATCTGCATTAGCAGTGGTCTGAAAATATTACCGAACTTTGCCTGTTCACGCTCTCGGCAACCCAACCACACGGTTGGA a score=17102.0 s hg17.chr7_random 553788 168 + 778964 CTGTCCGTTCTTGCTGGTAAGACAGGACACGCAGCCACTCATCAGCTCGCTGGGTGCTCACAGAGCCACTAAGCCTGGCTCACCGCCTCTGGG-TGCAGAGGATGGC--AGCAGACAGACTGGCCCCTGGAGCGAGCGGTGAGGTGAGCACAGGGCCCGAGTCCACCGAGG s panTro1.chr6 161021044 168 - 161576975 CTGTCCGTTCTTGCTGGTAAGACAGGACACGCAGCCACTCATCAGCTCGCTGGGTGCTCACAGAGCCACTAAGCCTGGCTCACCGCCTCTGGG-TGCAGAGGATGGC--AGCAGACAGACCGGCCCCTGGAGCGAGCGGTGAGGTGAGCACAGGGCTCGAGTCCACCGAGG s fr1.chrUn 293015770 166 + 349519338 CTCCCCCTTCTTAAAGGGGAGGTCCTCCGCGTCGCTGCCCGTGAAGTCGTAGAGCGTGCGCACGTACTCCAGGTTGTCCTCCGGGCCGGCGGGCTGCACGGGGCAGCTGAGCGTGCTGG--GGTACCTGGGG-GGGCAATACAGGGA--ACAGGGGGTGAGACCACGGCGC a score=9609.0 s hg17.chr7_random 553956 115 + 778964 ---AGAAGGAGCACCTCCACTGTGGTAGGGGGCAGGAGGAAACAGAGCAGGGGGGATGGGGGCGGCAGCTGCCGGAGCTCTGAGGAGAGGAGCGGGAG-------------------------------------------------------------------------------------CTGGAGCTGAGGCCTGGCTG s panTro1.chr6 161021212 115 - 161576975 ---AGAAGGAGCACCTCCACTGGGGTGGGGGGCAGGAGGAAACAGAGCAGGGGGGATGGGGGCGGCAGCTGCCGGAGCTCTGAGGAGAGGAGCAGGAG-------------------------------------------------------------------------------------CTGGAGCTGAGGCCTGGCTG s rn3.chr1 223326911 115 - 268121971 ---AGGACGATCCCCACCCATGTGCTTGGGGCCCGAAGGAAACGGGGCAGAGGGGATGGGGCAGGGGCCTGCCAGGGACCTGGTGATGGGAAAGGGGATC-----------------------------------------------------------------------------------CTGAGGAT--GGCCTGGATG s fr1.chrUn 293015936 199 + 349519338 CAGAGGAGCAGCACTTCTGAGGAAAAGGCGGTTCGGTCCAAAC---GCAGGAAGAATGCTAACAGCTGATGCTA-ACACCTGGCGCAAACAGCTGATGCCAACAGCTAATGCTAACACCTGGCGCAAACAGCTGATGCCAACAGCTGATGCTAACACCTGGCGCAAACAGCTGATGCCAACAGCTAATGCTAACACCTGGCAC a score=1833.0 s hg17.chr7_random 554071 16 + 778964 TGGAGCCTAA----AACAGT s panTro1.chr6 161021327 16 - 161576975 TGGAGCCTGA----AACAGT s fr1.chrUn 293016135 20 + 349519338 TAACACCTAATGCCAACAGC a score=22298.0 s hg17.chr7_random 554087 254 + 778964 CTGATGAGGGAcctgcatccagagcacggaaggggtcctcaaactccgcactcagaaacacagaactcgatttaatggatggcagttctgaatggccaccaaagacgacgtacgggtgcacagaagcacaccacagcacaggaaaaggccccaatgtcctctcattagggaatcgcaaagtaaaacaccatgggccaccactgcacactagccggacacgctgaaaccagcaaaccccaccaacaccGTGGGCC s panTro1.chr6 161021343 254 - 161576975 CTGATGAGGGACCTGCATCCAGGGAACGGAAGGGGtcctcaaactccgcactcagaaacacagaactcgatttaatggacggcagttctgaatggccaccaaagacgacgtatgggtgcgcagaagcacagcacagcacaggaaaaggccccaatgtcctctcattagggaatcgcaaactaaaacaccatgggccaccactgcacaccagccgcacacgctaaaaccagcaaaccccaccaacaccGTTTGCC a score=-403.0 s hg17.chr7_random 554341 8 + 778964 ACCACTGC-- s panTro1.chr6 161021597 7 - 161576975 ACCA-TGC-- s danRer1.chrNA 92550899 8 - 390413307 ACCA--GCTA a score=22258.0 s hg17.chr7_random 554349 391 + 778964 ACACCAGCCGGACAC-GCTCAAACCAGC--AAACCCCACCAACACCGTGGGCCACCACTGCACACCAACTGGACACACTGAAACCAGCAAACCCCACCAAC-CCTG-TG-TGACAA-CACTGC--ACACCAGCCGGACAC-GCTGAAACCAGCAAACCCCACCAACACCGTGGGCCACCACTGC----ACACCAGCCGGACACGCTCAAACCAGCAAACCCCACCAACACCGTGGGCCACCACTGCACA------CCAACTGGACACACTGAAACCAGCAAACCCCACCAACCCTGTGTGACAACACTGC--ACACCAGCCGGACAC-GCTGAAACCAGCAAACCCCACCAACACC--------GTGGGCCACCAC----TGCACACCAGCCGGACACGCTCAAACCAGCAAACCCCACCAACACC s panTro1.chr6 161021604 331 - 161576975 ACACCAGCCGGACAC-GCTAAAATCAGC--AAACCCCACCAACACCTTGGGCAACCACTGCACACCAGCCGGACACGCTAAAACCAGCAAACCCCACCAACACCT--TG--GGCAACCACTGC--ACACCAGCCGGACAT-GCTAAAACCAGCAAACCCCACCAACACCGTGGGCCACCACTGC----ACACCAGCCGGACACGCTAAAACCAGCAAACCCCACCAGCACCGTGGGCCACCA-----------------------------------------------------------------TGC--ACACCAGCCGGACAC-GCTAAAACCAGCAAACCCCACCAACACT--------GTGGGCCACCA-----TGCACACCAGCCGGACACGCTAAAACCAGCAAACCCCACCAACACC s fr1.chrUn 293016280 369 + 349519338 ACACCTGGCGCAAACAGCTGATGCCAAC--AGCTAATGCTAACACCTGGCGCAAACAGCTGATGCCAACAGCTAATGCTAACACCTG------GCACTAACACCTGATGCCAACAGCTAATGCTAACACCTGGCGCAAACAGCTGATGCCAACAGCTAATGCTAACACCTGGCGCAAACAGCTG----ATGCCAACAGCTAATGCTAACACCTG------GCACTAACACCTAATGCCAACAGCTAATG------CTAAC---ACCTGGCGCAAACAGCTGATGCCAACAGCTAA------------TGCTAACACCTGGCGCAAACAGCTGATGCCAACAGCTAATGCTAACACC--------TGGCGCTAACAG----CTGATGCCAACAGCTAATGCTAACACCTG------GCGCTAACACC s danRer1.chrNA 92550907 373 - 390413307 ACACCAGCCCGACCA-ACTAAGACCAGCTAAAAAGTGGCCAAAACC--------CCTCTAAAAACCAGCCTGACCAGCTAAAACCAG---------CTAAGACTAG-TT-TGACAA-----GCTAAGACCAACCTGACCA-ACTAAAACCAGCTAA-------AATGT----GGCCAAAACTCCTCTAAAACCAGCCTGACCAGCTAAAACTAGCTAAGACCAACCTGACCAACTAAGACCAGCTAAAAAGTGGCCAAAA---CCCCTCTAAAACCAGCCTGACCAGCTAAAACC------------AGCTAAGACTAGTTTGACAA-GCTAAGACCAACCTGACCAACTAAAACCAGCTAAAAGGTGGCCAAAACTCCTCTAAAACCAGCCTGACCAGCTAAAACCAGCTTGACCAGCTAAAACT a score=-1131.0 s hg17.chr7_random 554578 57 + 778964 TGC--ACACCAACTGGACA-------------C-ACTGAAACCAGCAAACCCCACCAACCCTGTGTGACAACA s panTro1.chr6 161021832 57 - 161576975 TGC--ACACCAGCCGGACA-------------C-GCTAAAACCAGCAAACCCCACCAACACTGTGGGCCACCA s fr1.chrUn 293016509 41 + 349519338 TGCTAACACCTGGCGCAAA-------------CAGCTGATGCCAACA------GCTAATG------------- s danRer1.chrNA 92551110 53 - 390413307 ---------CAGCTAAAAAGTGGCCAAAACCCC-TCTAAAACCAGCCTGACCAGCTAAAACCA---------- a score=-788.0 s hg17.chr7_random 554740 309 + 778964 GTGGGCCACCACTGCACACCAACTGGACACACTGAAACCAGCAAACC-----CCACCAACCCTGTGTGACAACACTGCACACCAGCCGGACACGCTGAAACCAGCAAACCCCACCAACACC-------------------GTGGGCCAC---CACTGCACACCAGCCGGACATGCTGAAACCAGCAAACCCCACCAACACCGTGGGCCACCACTGCACACCAGCCGGACAC-ACTGAAACCAGC--AAACCCCACCAAC---ACTGTGGGCCACCACTGCACACCAACTGGACACACTAA----------AAACAGCAAACCCCACCAACCCTGTGTGACAACACTGCACAC s panTro1.chr6 161021935 307 - 161576975 GTGGGCCACCACTGCACACCAGCCGGACACGCTAAAACCAGCAAACC-----CCACCAACACCGTTTGCCACCA-TGCACACCAACTGGACACACTAAAAACAGCAAACCCCACCAGCACC-------------------GTGGGCCAC---CACTGCACACCAGCCGGACACGCTAAAATCAGCAAACCCCACCAACACCTTGGGCAACCACTGCACACCAGCCGCACAT-GCTAAAACCAGC--AAACCCCACCAAC---ACCGTTTGCCACCA-TGCACACCAACCGGACACACTAA----------AAACAGCAAACCCCACCAACACTGTGTGACAACACTGCACAC s rn3.chr5 13649905 309 - 173106704 GTGGGAGAGCAGAGAGCACCAACTGGGATGTGGGAAAGCATGAAGCA-----CCAACTGGGATGTGGGAGAGCAGAGAGCACCAACTGGGATGTGGGAAAGCATGGAGCACCAACTGGGAT-------------------GTGGGAGAG---CAGAGAGCACCAACTGGGATGTGGGAAAGCATGGAGCACCAACTGGGATGTGGGAAAGCATGGAGCACCAACTGGG-AT-GTGGGAG--AGC--AGAGGGCACCAACTGGGATGTGGGAGAGCATGGAGCACCAACTGGGATGTGGGA----------GAGCAGAGAGCACCAACTGGGATGTGGGAGAGCAGAGAGCAC s fr1.chrUn 293016649 266 + 349519338 TAATGCCAACAGCTAATGCTAAC---ACCTGGCGCAAACAGCTGATG-----CCAACAGCTA---ATGCTAACACCTGGCGCAAACAG------CTGATGCCAACAGCTAATGCTAACACC-------------------TGGCGCAAA---CAGCTGATGCCAACAGCTAATGCTAA---------------------------------------CACCTGGCGCAAACAGCTGATGCCAAC--AGCTAATGCTAAC---ACCTGGCACTAACACCTAATGCCAACAGCTAATGCTAACACCTGGCGCAAACAGCTAATGCCAACAGCTA---ATGCTAACACCTGGCGC s danRer1.chrNA 92551280 307 - 390413307 ----------AGCTAAGACCAACCTGACCAACTAAAACTAGCTAAAAAGTGGCCAAAACCCCT------------CTAAAACCAGCTTGACCAGCTAAAACTAGCTAAGACCAACCTGACCAACTAAAACTAGCTAAAAAGTGGCCAAAACTCCTCTAAAACCAGCCTGACCAGCTAAAACCAGCTTGACCAGCTAAAACCAGCTTAAACGAGCTAAGACCAACCTGACCA-ACTAAAACTAGCTAAAAAGTGGCCAAA---ACT---------CCTCTAAAACCAGCCTGCCCAGCCAA----------AACCAGCTAAGACTAGTTTGACCTGCTGAAACCATTTAAAAC a score=1953.0 s hg17.chr7_random 555049 4 + 778964 CAGC s panTro1.chr6 161022242 4 - 161576975 CAGC s rn3.chr5 13650214 4 - 173106704 CAAC s danRer1.chrNA 92551587 4 - 390413307 CAGC a score=116.0 s hg17.chr7_random 555049 16 + 778964 CAGCTGGATACACTAA s danRer1.chrNA 92551587 16 - 390413307 CAGCTAAAAGTGGCCA a score=-1280.0 s hg17.chr7_random 555053 12 + 778964 ------TGGATACACTAA s panTro1.chr6 161022828 12 - 161576975 ------TGGACACACTAA s rn3.chr5 13650218 12 - 173106704 ------TGGAATATGGGA s danRer1.chrNA 92551591 12 - 390413307 TAAAAGTGGCCA------ a score=625.0 s hg17.chr7_random 555065 21 + 778964 AAACAGCAAACCCC------ACCAACC---- s panTro1.chr6 161022840 21 - 161576975 AAACAGCAAACCCC------ACCAGCA---- s rn3.chr5 13650230 21 - 173106704 GAGCAGGGAACATC------AATTGGG---- s fr1.chrUn 293016915 21 + 349519338 AAACAGCTGATGCC------AACAGCT---- s danRer1.chrNA 92551603 24 - 390413307 -------AAACTCCTCTAAAACCAGCCTGAC a score=2800.0 s hg17.chr7_random 555086 86 + 778964 CTGTGTGACAACACTGCACACCAGCCAGACACGGTAAAAAC---AGCAAACCC----CACCAACACCGTGGGCCACCACTGCACAC---CAGCCGG---- s panTro1.chr6 161022803 86 - 161576975 CTGTGTGACAACACTGCACACCAACTGGACACACTAAAAAC---AGCAAACCC----CACCAGCACCGTGGGCCACCACTGCACAC---CAGCCGG---- s rn3.chr5 13650251 86 - 173106704 ATATGAAAGAACAGAGAGCACCAACTGGGATGTGGAAGAGC---AGGGAGCAC----CAACTGGGATGTGGGACAGCAGGGAGCAC---CAACTGG---- s fr1.chrUn 293016936 93 + 349519338 ---AATGCTAACACCTGGCACAAACAGCTGATGCCAACAGCTAATGCTAACACCTGGCACTAACACCTAATGCCAACAGCTAATGCTAACACCTGG---- s danRer1.chrNA 92551627 86 - 390413307 -CAGTTAACACCAGCTAAGACCAGCTTGCCCTGCTATAACC---AGCTAAGAC----CAACCTGACCATTTAGGACCAGCTAA------AAAGTGGCCAA a score=9040.0 s hg17.chr7_random 555172 83 + 778964 --ACACGCTGAAAATAGCAAACCCCACCAACACCCTGTGCCA----CCATTGCACACCAGCTGGACACACTAAAAACAGCAAACCCCAA s panTro1.chr6 161022889 83 - 161576975 --ACACGCTGAAAACAGCAAACCCCACCAACACCCCGTGCCA----CCATTGCACACCAACTGGACACACTAAAAACAGCAAACCCCAA s fr1.chrUn 293017034 79 + 349519338 --ACA-GCTGATGCCAACAGCTAATGCTAACACCTGGCGCCAAGAGCTAATGC-TAACACCTGG------CGCAAACAGCTGATGCCAA s danRer1.chrNA 92551713 75 - 390413307 AATCCCTCTAAAACCAGCCTGACCAGTTAACACCA---GCTA-----------AGACCAGCTTGCCCTGCTATAACCAGCTAAGACCAA a score=6665.0 s hg17.chr7_random 555255 40 + 778964 TACCGTGTGTCAACACTGGACACCAACACCGTGTGCCAAc s panTro1.chr6 161022972 40 - 161576975 CACCGTGTGTCAACACTGGACACCAACACCGTGTGCCAAC s fr1.chrUn 293017113 40 + 349519338 CAGCTAATGCTAACACCTGGCACTAACACCTAACGCCAAC a score=74354.0 s hg17.chr7_random 555295 805 + 778964 actgcacaccaaccgacacact-aaaaacagcaaactccaccccacacgctggcctgactgcagcacctggaaatctcatccagtgcccgtggggatgcgacatggcgcgaagggtgtggaaaacagtgtgtggtgagtttctaacaaagtaaggactgtacctatggcccagcaaccccacgcctgagtgtttatccaataaaacactctcacaaaaaccagtctgcaagtgtttacatcagctttacctgtgatggccaaaaactagaaaggacccgaatatgcccctgctggtgaccagatggtccatccacgggagggaacgtgactcacgcgaagaaggaaagtgctgcagacacaggtgccatgcatgagcctccgacacagagaggaaagagcagacgccagcggccacgctcccacaacctcatgcaagtgacatcctggaagggacaCACAGGACGCAGCCCACAGCAGCAGTGCCAGGGCCCATGAGCAGTTCTGGGCGGTGGAGATGCCCACATGCAGGGGACAGAGGCGGTGCTGCTCAAAACTCACAGAGCTGCAGCCCTGAAGGGTGAATGCAGCGTGGTCCCGGGGGAAGGGCTATCACAGACCCTGGGCAGGGTGGGCAGGGGGTGGCAGGATGGTA---AGGACGTCACAGACCCTGGGCAAGGTGGGTGGGGGGTGGCAGGACCGTAAGGAGGGCGTCACAGTCCCTAGGCACGACGGGCGGGGAAAAGGGACGACACAGAGCCTGGGCACGGCGGGCGGGGGAAAGGGATGACACAGACGCTGGACAGGG s panTro1.chr6 161023012 809 - 161576975 ACTGCACACCAACCGACACACTTaaaaacagcaaactccaccccacacgctggcctgactgcagcacctggaaatctcatccagtgcccgtggggatgcgacatggcgcgaagggtgtggaaaacagcgtgtggtgagtttctaacaaagtaaggactgtacctatggcccagcaaccccacgcctgagtgtttatccaataaaacactctcacaaaaaccagtctgcaagtgtttacatcagctttacctgtgatggccaaaaactagaaaggacccgaatatgcccctgctggtgaccagatggtccatccacgggagggaacgtgactcacgcgaagaaggaaagtgctgcagacacaGGTGCCATGCATGAGCCTCCAACACAGAGAGGAAAGAGCAGACGCCAGCGGCCAGGCTCCCACAACCTCATGCACGTGACATCCTGGAAGGGACACACAGGACGCAGCCCACAGCAGCAGTGCCAGGGCCCATGAGCAGTTCTGGGCGGTGGAGATGCCCACGTGCAGGGGACAGAGGCGGTGCTGCTCAAAACTCACAGAGCTGCAGCCCTGAAGGGTGAATGCAGCGTGGTCCCGGGGGAAGGGATATCACAGACCCTGGGCAGGGTGGGCAGGGGGTGGCAGGATGGTAAGGAGGACGCCACAGACCCTGGGCAAGGCGGGTGGGGGGTGGCAGGACGGTAAGGAGGGCGTCACAGTCCCTAGGCACGATGGGCGGGGGAAAGGGACGACACAGAGCCTGGGCACGGTGGGCGGGGGAAAGGGATGACACAGACACTAGGCAGGG a score=5383.0 s hg17.chr7_random 556100 72 + 778964 CAGGACGGTAAGGAGGGCGTCACAAACCCTGGGCATGTTGGGTGGGGGGCAGCAGGACGGTAAGGAGGGCGT s panTro1.chr6 161023963 72 - 161576975 CAAGACAGTAAGGAGAGCGTCACAGACCCTGGGCACGGCAGGTGGGGGGTGGCAGGACGGCAGGGAGGGCGT a score=10666.0 s hg17.chr7_random 556204 127 + 778964 CAGGACGGTAAGGAGGGCGTCACAGGCCCTGGGCATGTTGGGTGGGGGGCAGCAGGACGGTAAGGAGGGCGTCACAGGCCCTGGGCATGACGGGCGGGGGAAAGTGAGGACACAGAGCCTGGGCCCA s panTro1.chr6 161023821 127 - 161576975 CAGGACGGTAAGGAGGGCATCACAGACCCTAGGCATGTTGGGTGGGGGGTGGCAGGACGGTAAGGAGGGCGTCACAGTCCCTAGGCACAACGGGCGGGGGAAAGGGACGACACAGAGCCTGGGCCCA a score=36546.0 s hg17.chr7_random 556331 271 + 778964 GCGGGCAGG---GGGGGGCAAGACAG----TAAGGAGAGCGTCACAGACCCTGGGCACGGCAGGCGGGGGGTGGCAGGACGGCAGGGAGGGTGTGTGCTTGGCAATACAG--GGCCAGT-GCAAACTTCTGAGGAAGAGACTCAAAAAATCTTCTGATCTGACATTTAAAATACTGTAGAAAAAAATCTGAGAAATCGTATTTAAAATTCAAATCTACAGACTGGAGAAAAGTAATTTGAGGAGAAAATGCCAAAAATCTAACACAACGTAGTGCTTATGC s panTro1.chr6 161023948 269 - 161576975 GCGGGTGGG---GGGGGGCAAGACAG----TAAGGAGAGCGTCACAGACCCTGGGCACGGCAGGTGGGGGGTGGCAGGACGGCAGGGAGGGCGTGTGCTTGGCAATACAG--GGCCAGT-GCAAACTTCTGAGGAAGAGACTCAAAAAATCTTCTGATCTGACATTTAAAATACTGTAGAAAAAAATCTGAGAAATCGTATTTAAAATTCAAATCTA--GACTGAAGAAAAGTAATTTGAGGAGAAAATGCCAAAAATCTAACACAACGTAGTGCTTATGC s canFam1.chrUn 89139316 251 - 91062872 GTGGATAGGGATGGGGGACATTGCAGGACTCAAGGAGAG----GCAGGT----GGCAGAGCGGGGGGAGGGGGGGGTGGTGGCAGGAGGGCCATGTGCGTGGTGAAGCTGGTGGCCGGTGGCAAGGTTCTGAGGAGGTTGCTGATGAA--------GTCTGATGTGTGAAATGGCGTA-AAAAGAATCTGAAAGCTGAGATTTAAAATTCA--------GTTTAAAGAAA--TAATTTTAGAAG---ATGCCAGCAATTTAACGAAATCTAGTGCTTATCC a score=1619.0 s hg17.chr7_random 556602 17 + 778964 GACTGACTGACTGTCAT s panTro1.chr6 161024217 17 - 161576975 GACTGACTGACTGTCAT a score=6345.0 s hg17.chr7_random 556619 34 + 778964 TCAATTCTAAATTTACTCTGCTCC-ACTTGAAACA s panTro1.chr6 161024234 34 - 161576975 TCAATTCTAAATTTACTCTGCTCC-ACTTGAAACA s canFam1.chrUn 89139786 35 - 91062872 CTAATTCTACATTCATTCTGCTCAGATTTAAAACA a score=17912.0 s hg17.chr7_random 556653 198 + 778964 AAAGTTCTGTGCCTAACGACACTCTCTACGCCTCGGCACGGATAACTAACTGTGTTTTTGTAATTATCAGTCAGGAACATTCCCAAGTCCTTGAACCAATTCTAAATCAGGCAGCCTCCAAAGAGCCTGTGTTTCCACCACAGGGAGGAAGCCCCTTCCGGGAACCTACTAGCAGGGCCAGACAGTTGGCGGGGTAGG s panTro1.chr6 161024268 194 - 161576975 AAAGTTCTGTGCCTAACGACACTCTCCACGCCTCGGCACGGATAACT----GTGTTTTTGTAATTATCAGTCAGGAACATTCCCAAGTCCTTGAACCAATTCTAAATCAGGCAGCCTCCAAAGAGCCTGTGTTTCCACCACAGGGAGGAAGCCCCTTCCGGGAACCTACTAGCAGGGCCAGACAGTTGGCGGGGTAGG a score=873.0 s hg17.chr7_random 556851 3 + 778964 GCA s panTro1.chr6 161024462 3 - 161576975 GCA s rn3.chr2 96491347 3 - 258222147 GCA a score=18134.0 s hg17.chr7_random 556854 47 + 778964 GGATGTGTATGTACATGTGTACATGTATGTGCACACACACGTACgtg s panTro1.chr6 161024465 47 - 161576975 GGatgtgtatgtacatgtgcacatgtatatgcacacacgcgtacgtg s mm5.chr9 44968957 47 - 124177049 GGATGTGTATGTGCATGCATATATGTGTGTGCACATACATGTGTGTG s rn3.chr2 96491350 47 - 258222147 GGTTGTATATACAAATATTTACATGCATGTGCACACACACGTACATG a score=0.0 s hg17.chr7_random 556901 5 + 778964 tgata a score=273.0 s hg17.chr7_random 556901 1 + 778964 t s panTro1.chr6 161024512 1 - 161576975 t s mm5.chr9 44969004 1 - 124177049 T a score=-117.0 s hg17.chr7_random 556902 4 + 778964 ga---ta s panTro1.chr6 161024513 7 - 161576975 gacgata a score=3880.0 s hg17.chr7_random 556906 20 + 778964 tgcatgtacacacgtgtgca s panTro1.chr6 161024520 20 - 161576975 tgcatgtacacacgtgtgca s rn3.chr2 96491397 20 - 258222147 CACAGGCACACTCATGTGCA a score=54607.0 s hg17.chr7_random 556926 666 + 778964 gatgtgtatatgtgtgtacacgtgtgtgaggataagtgtgtacgtgtgtgaggatatacatgtacacgtgtgtgcacaggtgtgtatgtgtatacgtgtgcagatgtgtatatgggtgtgcacatgtgcgaggatgtgtgtacgcgtgtgacgatatgcatgtacacacgtgtgcatatgtgcacgtgtgtgcgatatgcatgtacatgtgtGCACAGgtgtgtgtgtacatgtgcatgcatgtgaatatgtgtgtgtgtgt----gtatgcgtgtgcgcctcgctctgtcttctcccttaccgcattCCAAGGATCATAGATCGTACCTTCCAGAAACAGTCCCCCCGACCCCCCGCCTCCCTCTCCGGTGCACAGCGGGAAGGACTGGACCCTCCTGGGTCTTGGGGACTGCCATTCCTGCCCCACTGACACCTGAAGGGTCTTCCACTGGTTTCTCAGTGAGCACGTGGAGAACGATTTGCCATGCAGCTTGGGCTCCGTGTAGCATGAATTAGGCAGACAGGCTGGACCCTCTCTAAGGAGCAGCATTTCCTCATTGGTGAGGAGAGCCCAGCTGAAATCACCAGGAGCAAACAACCCACAGCTTAGCTTAAAGGTCCGACCAACGCAGAAGCCCACCACAGGCGGCTGGA-GGGAGAGGCACTGAC s panTro1.chr6 161024540 652 - 161576975 gatgtgtatacgtgt--acacgtg----aggataagtgcgtacgtgtgtgcg-atatacatgtacacgtgtgtgcacaggtgtgt----gtatacgtgtgcagatgtgtatatgggtgtgcacatgtgcgaggatgtgt--acgcatgtgatgatatgcatgtacacacgtgcgcatatgtgcacgtgtg--cgatatgcatgtacatgtgtgcacaggtgtgtgt--acatgtgcatgcatgtgaatgtgtgtatgtgtgtttgtgtatgcgtgtgCGCCTCGCTCTGTCTTCTCCCTTACCGCATTCCAAGGATCGTAGATCGTACCTTCCAGAAACAGTCCCCCCGACCCCCCGCCTCCCTCTCTGGTGCACAGCGGGAAGGACTGGACCCTCCTGGGTCTTGAGGACTGCCATTCCTGCCCCACTGACACCTGAAGGGTCTTCCACTGGTTTCTCAGTGAGCACGTGGAGAACGATTTGCCACGCAGCTTGGGCTCCGTGTAGCATGAATTAAGCAGACAGGCTGGACCCTCTCTAAGGAGCAGCATTTCCTCATTGGTGAGGAGAGCCCAGCTGAAATCACCAGGAGCAAACAACCCACAGCTTAGCTTCTAGGTCCGACCAGCGCAGAAGCCCACCACAGGC-GCTGGAGGGGAGA-GCACTGAC a score=37893.0 s hg17.chr7_random 558510 476 + 778964 tgttgtggggtgaggtgaggggggagggatagcattaggagatatacctaatgctaaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaactaacctgcacattgtgcacatgtaccctaaaacttaaagtataataataataaaataaAATAAaaataaataataaataataaaaaaataaaaaaagaacttatttatgtaaccaaataccac--------ctgttcaccaaaaacctattgaaacaaaaataaataaataaataTAAactaaaaatacaaaattagctgggcgtggtggtgagtggctgtaatcccagctacttgggaggctgacgcaggagaatcgcttgaacctggaagttggaggttgcagtgagccgagactgagtcattgcactccagcctgggcaacaagagtgaaactctgtctcaaaaaaaaaaaaaaaaaaa---gaTCGAGCGTT s panTro1.chr6 161026110 487 - 161576975 tgttttggggtgcggggaggggggagggataccattaggagatatacctaatgctagaggcggagttaatgggtgcagcacaccagcatggcccatgtatacatctgtaactaacctccacattgtgcacatgtgccctaaaacttccagtccaatcccaataaaataaaataaaaataaacaataaatactaaaaaaataacaaaagaacttatttatgtaaccaaataccacatattcacctgttcaccaaaaacccattgaaacaaaaataaataaataaCTGTAAactaaaaacacaaaattagccggtcctggtggtgagtgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacctgggagttggaggttgcagtgagccgagactgagtcattgcactccagcctgggcaacaagagtgaaactctgtctcaaaaaaaaaaaaaaaaaaaaaaGATCGAGCGTT a score=2498.0 s hg17.chr7_random 558986 18 + 778964 CTCACTGGCTTCACTCCA s panTro1.chr6 161026597 18 - 161576975 CTCACTGGCTTCACTCCA s canFam1.chrUn 89140277 18 - 91062872 CTGTCAGACTTTACTAAA a score=16953.0 s hg17.chr7_random 559004 65 + 778964 TCAGAACAAACCTTGCTTGCAACTAATTTCTGT-GCCTTTTC-CAAACATGTGTGCTTTCCCTGTAC s panTro1.chr6 161026615 65 - 161576975 TCAGAACAAACCTTGCTTGCAACTAATTTCTGT-GCCTTTTC-CAAACATGTGTGCTTTCCCTGTAC s mm5.chr5 12659268 66 - 149219885 TCAGAACAAGCCCAGCTTACAGCTGCTACCTGTAGCTTTCTC-AGGACTGGAGTGGTGTCCTTCTGC s canFam1.chrUn 89140295 66 - 91062872 TCAGAAAAATCCCTACTAGCAACTCATTTTTGT-ACCTTTTCTAAAATACATGTGATCTCCCCTTAT a score=18694.0 s hg17.chr7_random 559069 129 + 778964 AGCAACTGTGCAGCGTGG--GGTGGGGCTGCAAGGTGGAGAATGCCGACCGGGAGGAAAAGCAACCCTGTGATTCACAGGCTCGGGAGGAGCCACGG----CTCTGTAGGCGT-GGATTTAACAGGGCACCAAACA s panTro1.chr6 161026680 129 - 161576975 AGCAACTGTGCAGCGTGG--GGTGGGGCTGCAAGGTGGAGAATGCCGACCGGGAGGAAAAGCAACCCTGTGATTCACAGGCTCGGGAGGAGCCACGG----CTCTGTAGGCGT-GGATTTAACAGGGCACCAAACA s canFam1.chrUn 89140361 136 - 91062872 ACCAACCGTGCAGTGTGGGAGGCGAAGCTGGATCAGAAGATATGCTGACCAGAAAGAATTACAGCCATTGGATTCACAAACTTAAGAGGGAGTAGGGGCTCCTTTGCTGGCCTCAGAGTTAGCGTCACACCAAATA a score=72324.0 s hg17.chr7_random 559198 883 + 778964 TCAATACCAGACATGAGAAACTGttt----tttgtttgtttgtttgttttaaacggggtctcactctgtcacccaggctggagtgcaggggtgtggtcatagctcaccgcagcctcaacttcctggacccaagcgatcctcccacctcagcctctggagcagctgggatacaggcatgcaccaccacgcccagctaatttgttttgtttttgttaaaatatttgtaaagtaggagtcttgctgtgttgcccaggttggtctccaactcctgggctcaggtgatcctcccaccctggccccccgcgtagttgggatacaggcgtgagctactgtgcccggccAAGAAGCTACTTTAATGCTGTATTTGACGGAATACATTTCCCTCCAGGACCTGACCCCGGGCTACTTCAGCGCCTCAACTAGGCCAGGGAGGTGACATGGGAAGTAAGTTGAGACTGCAAATCTCTCAGGGCATCTGATTTGGGCTGTGCATCTGATTtgagctgggaatgattgatttgagctggacatgattgatttgagctgggcatc----tgatttgagctgggcatgattgatttgagctgggcatgattgatttgagcggggcatgtgatttgagctgggcatgattgatttgagctgggcatgtgatttgagctgggcgtctgatttgggctgggcatctgattgatttgagctgggcatctgatttgagctgggcatgattgatttgagctgggcatgattgatttgagctgggcatgtgatttgagctgggca--tgattgatttgagctgggcatgtgatttgagctgggcgtctgatttgggctgggcatctgattgatttgagctgggcgtctgatttgggctgggcATCTGATTGATT s panTro1.chr6 161026809 867 - 161576975 TCAATAGCAGACACGAGAAACtgttttttgtttgtttgtttgtttgttttaaacggggtctcactctgtcacccaggctggagtgcaggggtgtggtcatagctcaccgcagcctcaacttcctggacccaagcgatcctcccacctcagccttcggagcagctgggatacaggcgtgcaccaccacgcccagctaatttgttttgtttttgttaaaatatttgtaaagtaggagtcttgctgtgttgcccaggttggtctccaactcctgggctcaggtgatcctcccaccctggctccccgtgtagttgggatacaggcgtgagctactgtgcccggccAAGAAGCTACTTTAATGCTGTATTTGACAGAATACATTTCCCTCCAGGACTTGACCCCGGGCTACTTCAGCGCCTGAACTAGGCCAGGGAGGTGACATGGGAAGTAAGTTGAGACTGCAAATCTCTCAGGACATCTGATTTGGGCTGTGCATCTGATTtgagctgggcatgattgatttgagctgggcatgattgatttgagctgggcatctgattgatttgagctgggcatg--tgatttgagctggg--tgtctgatttgggctgggcatgtgatttgagctgggcgt--ctgatttgagctgggcgtctgatttgggctgggcgtctgatttgggctgggcatctgattgatttgggctgggcatc----------------tgattgatttgagctgggcgt--ctgatttgagctgggcatctgatttgggctgggcatctgattgatttgggctgggcgtctgatttgagctgggcgtctgatttgagctgggca--tgattgatttgggctgggcatctgatttgggctgggcatctgattgatt a score=11418.0 s hg17.chr7_random 560081 191 + 778964 GGAGCTGGGCATctgatttgagctgggcatgattgatttgagctgggcatgattgatttgagctgggcatgtgatttgagctgggcat--gattgatttgagctgggcatgtgatttgagctgggcgtcttgatttgggctgggcatctgattgatttgagctgggcgtctgatttgagctgggcatgtgatt s panTro1.chr6 161027500 172 - 161576975 tgggctgggcatctgatt----------------gatttgagctgggcgt--ctgatttgagctgggcatctgatttgggctgggcatctgattgatttgggctgggcgtctgatttgagctgggcgtct-gatttgagctgggcat--gattgatttgggctgggcatctgatttgggctgggcatctgatt a score=25610.0 s hg17.chr7_random 560272 296 + 778964 tgagctgggcGTCTGATTTGAGCTGGGCATCTGATTTGGGCTGGGCATCTGATGTGGGCTGCGCTTCACCTACTTTTTGTCCTCGTCAGTGCGTATCTATTATTTACTTTTAAGAAGATGCCCCGCAGATAGACTCAAGTGATGAAAGCACTTGACCGCGTGCAAGTGGAAGACACTCAGCCCCGCGAGAGGAGGGCGGTTTCTAAACAGATGAAGCCCAAGGTGGGCCGGCGGCGTGGCAGAGCAAATGTGTTGGGGCTGGACCTGGGAGCCTCCACTCAGACTCAGCCAGACCT s panTro1.chr6 161027676 291 - 161576975 tgggctgggcatctgatttgggctgggcgtctga-----gctgggcGTCTGATGTGGGCTGCGCTTCACCTACTTTTTGTCCTCGTCAGTGCGTATCTATCATTTACTTTGAAGAAGATGCCCCGCAGATAGACTCAAGTGATGAAAGCACTGGACCGCGTGCAAGTGGAAGACACTCAGCCCCGCGAGAGGAGGGCGGTTTCTAAACAGATGAAGCCCAAGGTGGGCCGGCGGTGCGGCAGAGCAAATGTGCTGGGGCCGGACCCGGGAGCCTCCACTCAGACTCAGCCAGACCT a score=26999.0 s hg17.chr7_random 560568 274 + 778964 GCTGGGCTCTGCGGAGAGA-----TGCACATGGGTGCCCGCAACATGGCCAGGGAGCAAATGTGGG------------------AAGGGCGGGGAGGCCACGCAGCAGGAGACCCTGTTCCCAGGTTGGAAATCATGTGGAACCATGAAGAAGACCTCACCTCACCCGTGGCCCTCGTGCTGAGCTCTGTCTTGGTGAAATGAT-AAGCCCCTCATCCCACTGTTTCCAACACCCCCCAACCACCAGCAGAGCTGCCCAGG---AACCCAG----AGTTCAATGCACCCTTGTGTGCACAGCCAA s panTro1.chr6 161027967 274 - 161576975 GCTGGGCTCTGCGGAGAGA-----TGCACATGGGTGCCCGCAACGTGGCCAGGGAGCAAATGTGGG------------------AAGGGCGGGGAGGCCACGCAGCAGGAGACCCTGTTCGCAGGTTGGAAATCACGTGGAACCAAGAAGAAGAGCTCGCCTCACCCGTGGCCCTCGTGCTGAGCTCCGTCTCGGTGAAATGAT-AAGCCCCTCATCCCGCTGTTTCCAACACCCCCCAACCACCAGCAGAGCTGCCCAGG---AACCCAG----AGTTCAATGCACCCTTGTGTGCACAGCCAA s mm5.chr5 12659624 269 - 149219885 GCCAGGCTGTGGGCAGAAACCCTCCTCACAGCGGAGCTTGCTAGACAGCCA-----CAAACATGGGCTCGAGTCACGACTACATGAGGACAAGCAGGCGCCAC--CAGAAGA--CTGCCCCGAGTTCAGAACACACA------CAGGAAGACAAATGCCACTCATCCCTGACCTGCAGGCTTAGCTGGCTCTTGATGAAAGGATGAAGCCTGCCCAGGTGCCATTCCTGAAAC----------TCAGTTGTGCTGTAGAGGCCTGGCCCAGCTACAGGTCCCTGCAC------ATGCTCA----- a score=30580.0 s hg17.chr7_random 560842 229 + 778964 CGGAGGGGGGCGGACACCATCTGGCAGTGCG-CTGGACACTT-TCAGAAGCCCACAGCCTTTTTAAAATAAAGCTGGCCAGAGGAGGGG----AGAGGTCA----CTGCAAGGCACATGGGGGCTCTCCAGATGCTGAGGAGAGACGTGCTC---TGCCCAGGATGCAGGAGCCCCAGCCCAGTG-------GGGAGACGCCTGCACCTTTCCGACGCGGCCGCCTGGGCT--CAGAACTGCAAGAGCTGA s panTro1.chr6 161028241 229 - 161576975 GGGAGGGGGGCGGACACCATCTGGCAGTGCG-CTGGACACTT-TCAGAAGCCCACAGCCTTTTTAAAATAAAGCTGGCCAGAGGAGGGG----AGAGGTCA----CTGCAAGGCACATGGGGGCTCCCCAGATGCTGAGGAGAGACGTGCTC---TGCCCAGGATGCAGGAGCCCCAGCCCAGTG-------GGGAGATGCCTGCACCTTTCCGACGCGGCCGCCTGGGCT--CAGAACTGCAAGAGCTGA s mm5.chr5 12659893 214 - 149219885 --GAAGGGAGTGGTGAACAGATGACAGCACATCTGGATATTTATGGGAAGTCCTCCCCTTCTTTAAAAATGAGC---CCAGAGGTGGGGAAAAAAAGGTC-----CTGAGAAACAGAGGA--------CAGAGGCTG----GGTCTGTGTGC---CATCCAGGGAAGGTGGCACCCTTCTCTGTGATCTCCAAAGAGGGACCTA------------GCAAGCACTGGGTCCAGCAGTACCTCAGGCACCAG s rn3.chr12 16021261 188 + 46649226 CAGAAGGAAACTGTGGACAGCTGACAGAACATCTGGATGCTC-CTGGAAGTTCTCCCCTTCTTTAAAATCGGGC---CCAGAGGTGGGA----AAAGATCAGGTTCTAAGAGTCAGAGGG--------CAGAGGCTGGCAGCACCTGGGCCTGCATGCCCAGGA-----------------------------------ACCTA------------GCAACCACTGGGCTCAGCAGCACCTCAGGCACCAG a score=4629.0 s hg17.chr7_random 561071 69 + 778964 AGCTTCCTTCA-GGCTCAGAA-----GCCCCTTTCCCACCCAACAAGGGCTCGCCTCCTGGCGCTCCCCTCTGCC s panTro1.chr6 161028470 69 - 161576975 AGCTTCCTTCA-GGCTCAGAA-----GCCCCTTTCCCACCCAACAAGGGCTGGCCTCCTGGCGCTCCCCTCTGCC s mm5.chr5 12660107 62 - 149219885 TGCCTTCTCCA-GGCCAAGAACAAATGCCCCTCACGGACCT--------CCCGTCTGCTG----TGCCCGCAGCA s rn3.chr12 16021449 51 + 46649226 TGCCTTCTTCAGGGCCAAGAACAAATGCCC------------------------CTCATGGACGTCCCATCTGCT s galGal2.chr14 16276454 50 - 20603938 AGCCTCCCTCA-GT------------GCCA----CCCACTCAAAAAAATCCCTACT--------TTCTCTTTAAG a score=0.0 s hg17.chr7_random 561140 1 + 778964 G a score=600.0 s hg17.chr7_random 561140 1 + 778964 G s panTro1.chr6 161028539 1 - 161576975 G s mm5.chr5 12660169 1 - 149219885 G s rn3.chr12 16021500 1 + 46649226 G a score=-2772.0 s hg17.chr7_random 561141 4 + 778964 CG-----------GT s panTro1.chr6 161028540 4 - 161576975 CG-----------GT s mm5.chr5 12660170 3 - 149219885 C------------AC s rn3.chr12 16021501 15 + 46649226 TGCCCCCAGCAGTAC s fr1.chrUn 293213836 4 - 349519338 CG-----------AC a score=238.0 s hg17.chr7_random 561141 5 + 778964 CGGTC s fr1.chrUn 293213836 5 - 349519338 CGACC a score=1000.0 s hg17.chr7_random 561145 1 + 778964 C s panTro1.chr6 161028544 1 - 161576975 C s mm5.chr5 12660173 1 - 149219885 C s rn3.chr12 16021516 1 + 46649226 C s canFam1.chrUn 89141193 1 - 91062872 C a score=127336.0 s hg17.chr7_random 561146 140 + 778964 ACTCACCATGTGGAGGGTAATGGGGTGGGGTGGGAGGGGCAAAGTCCAGCTTGTCCTTCAGGTCCTCCTCATTCTCCTTCTGCCACTGCAGGCCAACGTCCTCCCAGAGGCTGGCAGCCAGCTGCCTGAGGCACAACAGA s panTro1.chr6 161028545 140 - 161576975 ACTCACCATGTGGAGGGTAATGGGGTGGGGTGGGAGGGGCAAAGTCCAGCTTGTCCTTCAGGTCCTCCTCATTCTCCTTCTGCCACTGCAGGCCAACGTCCTCCCAGAGGCTGGCAGCCAGCTGCCTGCGGCACAACAGA s mm5.chr5 12660174 138 - 149219885 ACTCACCGTGCTCAGGGTAGTTGGGAGGAGGAGGTGAAGCGAAGTCCAGCTTGTCCTTTAGATCTGCCTCGTTCTCCTGCTGCCACTGCAGCCCGACCTTCTCCCATAGGCTGGTGGCTGTCTGCCTGCAACACAGCA-- s rn3.chr12 16021517 138 + 46649226 ACTCACCGTGCTCAGGGTAGTTAGGAGGAGGAGGTGAAGCAAAGTCCAGCTTGTCCTTTAGATCTGCCTCATTTTCCTCCTGCCACTGCAGCCCGACCTTCTCCCAGAGGCTGGTGGCTGTCTGTCTGCAACACAGCA-- s canFam1.chrUn 89141194 140 - 91062872 ACTCACCTGGTGAGGGGTGATGGGCTGGAGGGGGAGTGGCAAAGTCGAGCTTGTCTTTGAGGTCCTCCTCGTTTTCCCTCTGCCACTGCAGGCCGACCTTCTCCCAGAGGCTGGTGGCCATGAGCCTGCAGCACAACACA s galGal2.chr14 16276504 136 - 20603938 ACTCACCTCCTTTGGGATAATGAGATGG---TGGAACGCTAAAATCCATCTTATCCTTCAGATCTTCTTCGTTCTCCTTCTCCCACTGCAAGCCTACCTTTTCCCAGTAAGTCCAAGCGAG-TGTCCTAGGCATAAAATA s fr1.chrUn 293213841 137 - 349519338 ---CACCATCATTTGGGTAGAATAGTGGTGGGGTGAGAAGAAAATCTAATTTGTCCTTGATATCCTCTTCATTCTCTTTCTCCCACTGGGCACCAACTTGCTTCCATAAATCGGCTGCTAAAAGTCTACAGAATCGCAAA a score=-8050.0 s hg17.chr7_random 561286 45 + 778964 CAGA-CAACAGTGGC--TCAGGGCAGGGCAC----------GCAGGGGAGGCCGCA---GG s panTro1.chr6 161028685 45 - 161576975 CAGA-CAACAGCGGC--TCAGGGCAGGGCAC----------GCAGGGGAGGCCGCA---GG s mm5.chr5 12660312 46 - 149219885 -ACA-CAGGAGTGGCGGTGAGGTCTGGGTGC-------------CGGGAGACCCCATCCAT s rn3.chr12 16021655 46 + 46649226 -GGA-CAGGAGTGGCAGTGAGGTCTGGGTGC-------------CAGGAGATCCCTTCCAT s canFam1.chrUn 89141334 41 - 91062872 CATA-------------TCAGGGCAGGCAGCTCCTGCAGAGGCAGGTGGGACTG------- s galGal2.chr14 16276640 46 - 20603938 AAAATCACTACTCCC--AAAGGAAAACATTT----------TAAAATTAGACTTCT---GG a score=0.0 s hg17.chr7_random 561331 8 + 778964 GCTGCGCC a score=625.0 s hg17.chr7_random 561331 4 + 778964 GCTG s panTro1.chr6 161028730 4 - 161576975 GCTG s mm5.chr5 12660358 4 - 149219885 GAAG s rn3.chr12 16021701 4 + 46649226 GAAG a score=491.0 s hg17.chr7_random 561335 4 + 778964 CGCC s panTro1.chr6 161028734 4 - 161576975 CGCC s mm5.chr5 12660362 4 - 149219885 GTCC s rn3.chr12 16021705 4 + 46649226 GCCC a score=-9034.0 s hg17.chr7_random 561339 149 + 778964 AGGACACGGGTCACCCAAAGACCCCATTGC-------GTGAGAGCGGGAAGC-T---CCCCAACCCCAGAAAAGGTGGACCAGAAATTCCACTT--------------------CATCTTGTGAGCACTCTACTGACAGTACACA-------AAGGGGGCCGTCTGATCTCTGTCGATATACTCAGT------------------- s panTro1.chr6 161028738 149 - 161576975 AGGACACGGGTCACCCAAAGACCCCATCGC-------ATGAGAGCGGGAAGC-T---CCCCAACCCCAGAAAAGGTGGACCAGAAATTCCACTT--------------------CATCTTGTGAGCACTATACTGACAGTACACA-------AAGGGGGCCGTCTGATCTCTGTCCATATACTCAGT------------------- s mm5.chr5 12660366 147 - 149219885 TGACCACAGAAGCCTCAGGGAAACACCCGCTGGGCTGGGGAGAAGGGGGAGG-TAACACACAACACTTGGCAGGAGTGGCC------TTCAGAC--------------------CAGCTC-TGACTAC-ATGGTGACAACAC-CA-------GCAGGGGC---CTGATGTCCACCTATTGGCCCAAC------------------- s rn3.chr12 16021709 147 + 46649226 TGACCACATCAGCCTCAGGGAAACACCTGCTGGGCTGGGGAGAAGGG------T---------------------TAGGCCACAGGCATCACTTGGCAGAAGTGGCCTTCTGACCAGC---TGACTAC-AGGGTGACAATAC-CA-------GCAGGGCCCAACTGAAATAT-TAAAAAGGCTCAAC------------------- s galGal2.chr14 16276686 164 - 20603938 ----AAAATATGACTTCTTGAATTCATTT--------GGAAGAATGGGAAGCAT---TCCTGCTATTTAAATAGGACTACTAAGAGCTGATGCT---------------------------TATGTACTTGGTGGACAAAGGTCACTTCTTCCAAAGGGTAATCCCAGCTCTGTCTCTCTTACCATTTCCATCCCTCACACTTGCT a score=-822.0 s hg17.chr7_random 561488 1 + 778964 C- s panTro1.chr6 161028887 1 - 161576975 C- s mm5.chr5 12660513 2 - 149219885 TG a score=160.0 s hg17.chr7_random 561488 3 + 778964 CCA s galGal2.chr14 16276850 3 - 20603938 TCA a score=145.0 s hg17.chr7_random 561489 2 + 778964 CA s mm5.chr5 12660515 2 - 149219885 AA s galGal2.chr14 16276851 2 - 20603938 CA a score=469.0 s hg17.chr7_random 561491 4 + 778964 ATGT s mm5.chr5 12660517 4 - 149219885 ATAC s rn3.chr12 16021856 4 + 46649226 AGGT s galGal2.chr14 16276853 4 - 20603938 ACAT a score=594.0 s hg17.chr7_random 561495 7 + 778964 TAAAAAG s mm5.chr5 12660521 7 - 149219885 TAAAAAG s rn3.chr12 16021860 7 + 46649226 CTTAAGG a score=-7601.0 s hg17.chr7_random 561502 76 + 778964 ATGGGAAATGCCATTTACAAAA---------------------------------CGAGACGACTTCTG----TACGGCACATCCCTT----CGGAGCA--------------CAGGGACAA---AGGGACACC s mm5.chr5 12660528 73 - 149219885 GTCCAACAGGGTCTTAATGATG---------------------------------GGAAACAGGTC--A----TATGACACAGGACCA----CATAACA--------------CATGGAATA---AGGGG-ATG s rn3.chr12 16021867 107 + 46649226 ACTGGAGACAGTTTATATGACACAGGACCACACCACACACAGGGTCTTAAAGACTGGAGACAGTTC--A----TATGACACAGGACCA----CACCACA--------------CACAGGGTA---AGGGGATGG s canFam1.chrUn 89141443 94 - 91062872 -------ACAGCAAATACAACAGA-------------------------------GGAGACAAGGT--AAGCTTCTGGGAGAGACTCTGAGGCAGAGCAACAACCATTGCTCTCAGTGACCATTTAGGAGGAGT a score=-20926.0 s hg17.chr7_random 561578 94 + 778964 AGCAGGTTTCTG------------TGAGAGACTGGGAGCAAAGAGAAACCACCACTGCTACA--CATGACCGTTTAGG-------------------------------------------AAGACAAGGCCCG-----------------CGGCCGCCTGC---------CCA--------CGT s mm5.chr5 12660601 89 - 149219885 GGCAGATTTTTT------------GGGCAACTCTGGAGCAAAG--------CTCTTGTTCCA--AAT--CAGGCAGGG-------------------------------------------GACACCACGCC--------------------AGCCACCTGC---------CCAGCGGGACACTT s rn3.chr12 16021974 139 + 46649226 GGCAGATTCTTT------------GGACAATTCTGGAGCAAAG---AACTGCCACTGTAGTG--ACTGGCAACTAGGGAGAAGCTCTTGTTCCAAGTCAGCATGATCCCAGGGGGCTAGGCGACACCGCCCC--------------------GTGCACCTGC---------CCGGGGAGATGCTT s canFam1.chrUn 89141537 120 - 91062872 CTCTGATGTTCC------------AGAAAA--------CAAAG-GAATCTGCAGTTGCAACAGCAAAGGCTTCTGAGC-----CTCTTAA-------------------------------AACAGAAGGCCCGACGGCTCCCTAGAACCATGGCCACCAGCGTCATTTCACCA--------CTT s galGal2.chr14 16276950 74 - 20603938 ----AATACTTCCATGCGGAGGAAGGGGAGTGGAGGGGCAAAG---------------------AAAGAA----AAGA-------------------------------------------AAAACCAGA----------------------AGTATTCTGC---------TTA--------CAT a score=83093.0 s hg17.chr7_random 561672 167 + 778964 ACCTGACCTCAGGCACCTCGTCGTTGAGGCTACTGAGCAGCAGAGGGATGAGCTTGTGGAAGAAGGAGTAACGGTCACGCAGACACAGCAGCCAGCCGCCCACCACGGAGGCCACCGCCCGCCGGACCTG---------CGCATGAGAGGAAGGGATAAG------GATTCGTGT------AGGCAAA s mm5.chr5 12660690 167 - 149219885 ACCGGATCTCAGGCATTTCATCACTGAAGCTGCTGAGCAGCAGTGGGGTGAGCTTGTGTAGGAAGGAGTAGCGGTCCCGGAGATTCAGCAGCCATCCCCCGACCACCGAGGTCACTGCCTGCCGGACCTG--------CCGCAAGAGAATAGAGAAGCGT------CACTCATG-------AGTCCCT s rn3.chr12 16022113 173 + 46649226 ACCGGACCTCAGGCATTTCGTCACTGAAGCTGCTGAGTAACAGTGGGGTGAGTTTGTGAAAGAAGGAGTATCGGTCACGGAGATTGAGCAGCCATCCCCCCACCACCGAGGTCACTGCCTGCCGGACCTG--------ATGCAGGAGAGTAGAGAAGAAGCAGCTTCACTCACC-------AGTCCCT s canFam1.chrUn 89141657 159 - 91062872 ACGCGATTTCAGGTATGTCGTCCTCAAGGCTGCTCAGCAACAGTGGGATGAGCTTGTGAAAGAAGGAATAACGGTCCCGCAGGTCCAGCAGCCAGCCCCCCACCACGCCGGTCACCGCCTGCCGCACCTA-------TACGCAAAGGAA-ATAGGAAGGT---------------------AACCTCG s galGal2.chr14 16277024 173 - 20603938 AT----TTTCAGGAATTTCATCAGTAACGCTGCCAAGTAACAGAGGGATCAACTTGTGAAAATAGGAGTATCTGTCCCGGAGGTGCAACAGCCATTCCCCAATGACGGTTGTTACAGCCTGACGAACCTGTGTGGATTAAAAATGAGGGAACAAAAAAAT------AATTCATCTGTAAAAAG----- s danRer1.chrNA 52197517 169 + 390413307 ACCTGATTTCAGGGATCTCATCACTGACGCTGGTCAGAAGCAGCGGGATGAGCTTGTGGAAGTAGGAATATCTGTCCGGCAGACGGAGAAGCCAATCACCAACAACAAGAGTAACAGCCTTCCTCACCTG-------AGCAGATTAGCACAATAATAAAT------CATTTGTATATGGAAA------ a score=600.0 s hg17.chr7_random 561839 1 + 778964 G s mm5.chr5 12660857 1 - 149219885 G s rn3.chr12 16022286 1 + 46649226 G s canFam1.chrUn 89141816 1 - 91062872 G a score=1513.0 s hg17.chr7_random 561840 64 + 778964 GGGATGCCGGGGCTGACGCCACGGTGCGGCTCTGAGTGCTGCCATACGGACGCTG--CCTGAGGCA-- s mm5.chr5 12660858 47 - 149219885 GGAA-------------------GGGTGGCTCAGAGTCCTGCTGTGGGGATGTTAGTCCTGAAACA-- s rn3.chr12 16022287 47 + 46649226 GGAA-------------------AGGTGGCTCAGAGTCCTGCTGTGAGGATGTTAGTCCTGAAACA-- s canFam1.chrUn 89141817 36 - 91062872 GGCA---------------------GCACCT-----GCCTCCCATGCAAAC------CCTGTGATGAA a score=0.0 s hg17.chr7_random 561904 15 + 778964 GAGGCACGGCCAGGT a score=-552.0 s hg17.chr7_random 561904 4 + 778964 GAGG---- s mm5.chr5 12660905 4 - 149219885 GGGG---- s rn3.chr12 16022334 8 + 46649226 GGGCTGGG a score=250.0 s hg17.chr7_random 561908 11 + 778964 CACGGCCAGGT s rn3.chr12 16022342 11 + 46649226 TACAGCCCCAT a score=600.0 s hg17.chr7_random 561919 2 + 778964 CC s rn3.chr12 16022353 2 + 46649226 CC s canFam1.chrUn 89141853 2 - 91062872 CC a score=1061.0 s hg17.chr7_random 561921 242 + 778964 TGGGCCACCTACCACCGCCTAGATGCCATCCCCAAGACAGAGGCGCGTGGCCGGGGTCCTGGGCGCCACCAAGCCTGGGTCCCGGC-CAGCTCCGCCAGTCCCTCCTGG--CTGGGCCGGAGAGG--AATGCTGC--TGTCCTGCAGGCTCACACACACATACCCCGTGCCCCGGCCTGGTC--CTGTTGGCGAGAGCAGGCTCCCAGCTGCTACCTGAG---CCGTGCAGCGTGTTCAAAGTCTTCTGCATGA s canFam1.chrUn 89141855 209 - 91062872 TGAGCT----------------CTGCCGTCC----------------TGGCCAAA-----------CACCAGCCTGAGGTTCTGGAGCAGCTTTGCTGTTCATACTTGGGCTTGGAGAGAAGAGGTCAGGGCCACCTCGTCTTGTTGGTGCAAGCCCGCAT-CCCTGGGGCCTGGCCTGAACCTCTGCCAGCTACAGTTGGACCATGG-TGCTGCCCAGGGCAACGCGGTGCACATGCAAAGTCTTCTGTGTGG a score=175063.0 s hg17.chr7_random 562163 1729 + 778964 AAACCTCCTGGCCGGGCTGGGC-----CTGTCTCACCCTGGGTGCTTGGTGAGCCGTGGCTA------CAGCAAGTGT-GGTGCACCGTGGCCATACCTCAAAGGCGTCTGGTCCCAGAGC-----CCAGGGACTCTGGAGGAAACCAGTAGG--GTCCCCAGTTCTGCTGCTGGGTGTCTGAAGAGGGGGCACGAGGGCCTCTGCCTACCTTGCCTA-TGCAGGCGGAAGAAACCAGCTTC-ACACACACCAGGTGCTCTA-GCCAAGCTCCCAAAGGGCAATGCCTGAGACGGGGACC--AGCACCAACACTCCTtaagggaagcgggaacggccaggaagaagccaggtgaggaagcggtggggctgaag-ccagccgcagactgatcct--gggagctctggggtgtgaacgagctac----agagctgtcccctgtgaggccaggggCC-GACTCCGTG--GTGC-CATCAGTCCCTGGCTGG----GCCGTGGGGAGCAGGAGCCTCATCCCTCCTGACACTTTGGATGAAGCGTCTCTGCCCAGCCATGCACCATTAGCAATAGCGCTCACAGCCAGTCGTAGGTGCAGGGGACCCGAGCAGCAGCTGTGCCCATGGCGTGGTCACTC-GCTGGGACTCGGAGGAGGGGCTGCTCCGCCCCGGCTCCAACAAGGCCCAGAGCCAAGCAGA-CGCACCTAGGATCCGCCCCTGCCGGCCTGGGACCCGGGCCCTGGCCTGACTGCTCCGAAGTTCAT--TGCCACCTGGAAGATGGGAAAGAATGACTGACAGGGCTCGT--CACTAAGGTCCCGTGAGGGGAGGGCAAG---------------TTCACA-CAAGGAGAGGCCCGTTGCGCCTGACTCCCGCTGCCCGTGCGGTGCGCACAGGCGACTCTCGGCGTGCGAGCAGCAGGGAAGCACGCGAG--GGGACACAGGAATGTGTGGCGCGTTTGCC-------------------------------------------------------------------------------GGGGTCATTA--ACTGACACAGG-GCCTTACTAGCAACCACA-------------------------------------------------------AATACAAATGCCCAGATAACAACTAAGAGAAACCCAAATCAGCTCCACGGCCATTCCACCACCTGGCTAGAGAGTCCCCACAGAACAAACTGTCACTGTCGTCTTCACCCATGGC-------GCCGGCAGGTCTCGAGCAG------AGACAGCCCAGGGTTTAATGCAGTCGACACCTGCCACGGCCGCACCTGCCACGACGCTAATCCAGGTGAGCGGCAAACTCCAAGCTCACCCAGTGCCATGTGCTGA-GATGCTGCAAAGCCTGTCAGGCAGAGGGCGTGGCTGAGACAAGCCAGACTGCAG-CCAGCCCCCAGCCCAAACAGGTATACAGTGATGGGGCAGAGGGCGTGGCTGAGACAAGCCAGACTGCAGCCAGCCCCCAGCCCAAACAGGTATACAGTGATGGGGCAGAGGGCGTGGCTGAGACAAGCCAGACTGCAGCCAGCCCCCAGCCCAAACAGGTGTACAGTGATGGGGCCCTCTCCGGGAGATGGGCAGGCGTCCAGGGCCA-----CAAGGCCTGAGCACACTCTGCCCCAGGCCGGCAGCCAGGGAG--CAGTCTGAACTCGCTGGGTTTGGCCTCGCTGCTTTCTCCTCCCTGACCTCCTGCACTGTGTGCCAGGGTCTCTGCGGGGCCC--CACCCAGGACGGCCACCTGTCTGTCGGAACCCACAGATAGGCTTCTTTTGCAGAAAGGAG-CTTCAAACATCTCACC--TGATAGCAAGGACAGCTAGGGC-CGGGATTTGGGGCTGCTCCTGAGTCTCACGGACTGCCACCTTTTCTATCAG s panTro1.chr6 161029561 1664 - 161576975 AAACCTCCTGGCCGGGCTGGGC-----CTGTCTCACCCTGGGTGCTTGGTGAGCCGTGGCTA------CACCAAGTGT-GGTGCACCGTGGCCATACCTCAAAGGCGTCTGGTCCCAGAGC-----CCAGGGACTCTGGAGGAAACCAGTAGG--GTCCCCAGTTCTGCTGCTGGGTGTCTGAAGAGGGGGCACGAGGGCCTCTGCCTACCTTGCCTA-TGCGGGCGGAAGAAACCAGCTTC-ACACACACCAGGTGCTCTA-GCCAAGCTCCCAAAGGGCAATGCCTGAGACGGGCACC--AGCACCAACACTCCTtaagggaagcgggaacggccaggaagaagccaggtgaggaagcggtggg-ctgaag-ccagccgcagactgatcct--gggagctctggggtgtgaacgagctac----agagccgtcccctgtgaggccaggggCC-AACTCCGTG--GTGC-CATCAGTCCCTGGCTGG----GCCGTGGGGAGCAGGAGCCTCATCCCTCCTGACACTTTGGATGAAGCGTCTCTGCCCAGCCATGCACCATTAGCAATAGCGCTCACAGCCAGTCGTAGGTGCAGGGGACCCGAGCAGCAGCTGTGCCCATGGCGTGGTCACTC-GCTGGGACTCGGAGGAGGGGCTGCTCCGCCCCGGCTCCAACAAGGCCCAGAGCCAAGCAGA-CGCACCTAGGATCCGCCCCTGCCGGCCTGGGACCCGGGCCCTGGCCTGACTGCTCCGAAGTTCAT--TGCCACCTGGAAGATGGGAAAGAATGACTAACAGGGCTCGT--CACTAAGGTCCCGTGAGGGGAGGGCAAG---------------TTCACA-CAAGGAGAGGCCCGTTGCGCCTGACTCCCGCTGCCCGTGCAGTGCGCACAGGCGACTCTTGGCGTGCGAGCAGCAGGGAAGCACGCGAG--GGGACACAGGAACGTGTGGCGCGTTTGCC-------------------------------------------------------------------------------GGGGTCATTA--ACTGACACAGG-GCCTTACTAGCAACCACA-------------------------------------------------------AATACAAATGCCCAGATAACAACTAAGAGAAACCCAAATCAGCTCCACGGCCACTCCACCACCTGGCTACAGAGTCCCCACAGAACAAACTGTCACTGTCGTCTTCACGCATGGC-------GCCCGCAGGTTTCGAGCAG------AGACACCCCAGGGTTTAATGCAGTCGACACCTGCCACGGCCGCACCTGCCACGACGCTAATCCAGGTGAGCGGCAAACTCCAAGCTCACCCAGTGCCATGTGCTGA-GATGCTGCAAAGCCTGTCAGGCAGAGGGCGTGGCTGAGACAAGCCAGACTGCAG-CCAGCCCCGAGCCCAAACAGGTATACAGTGATGGGGCAGAGGGCGTGGCTGAGACAAGCCAGACTGCAGCCAGCCCCCAGCCCAAACAGGTGTACAG---------------------------------------------------------------------TGATGGGGCCCTCTCCAGGAGACGGGCAGGCGTCCAGGGCCACATGGCAAGGCCTCAGCACACTCTGCCCCAGGCCGGCAGCCAGGGAG--CAGTCTGAACTCGCTGGGTTTGGCCTCGCTACTTTCTCCTCCCTGACCTCCTGCATTGTGTGCCAGGGTCTCTGCGGGGCCC--CACCCAGGACGGCCACCTGTCTGTCGGAACCCACAGATAGGCTTCTTTTGCAGAAAGGAG-CTTCAAACATCTCACC--TGATAGCAAGGACGGCTAGGGC-CGGGATTTGGGGCTGCTCCTGAGTCTCACGGACTGCCACCTTTTCTAACAG s canFam1.chrUn 89142064 1714 - 91062872 GAGCCTCCCCAAGAAGCTGGCCGGCCGCTCTCTCACCGTGGGTGTTT-ATAGGCTGTTGGCAAGCCACCAGGAAACGTCAGCTTGCAGAGGCCACACCGCCAAGGCCTCCTGTCCTGGAGCTCCATCCAGGGCCTCCTGGGGAAGCCAGCATGACATACCCAGTCCTGCTGCTGGCT-------GAGGTGACGTGCATGCCTCCACCTACTTAGCCCACTGCAG--GAAAGAAACGAGCTTTAAAACAAATGAGATGCCCAAGGTCTAGCTCCCTGAGAGCTGAACCTGAAGCAGGAATCTAGATACCCTAAATCCTCATGGgagggaagtaggatggggcagaggccaaacagagatgtggctcagctgaggcccaacctccgcctgatcctgggggagcgtgggaaggcaatggcaccacaccaagtgttgtcccac-tgcgggcaggggcctgaccacttgcagtgtgtgtctgttgttggctggggctgccaatggaaggGGAAGC-----TCTTGCAGGGACTTCATATGAAGTGTCCC--CTGGGCAACATACCCATAGCAACCATGTCCCCAGCAGCTCCCAGGT-CAGGGGA-CTGGGCACCAGCAGCATGTACAGCATGTTTAGGCAGTTGGGACTTG--GGGTGGGCTGTTCAATCCTGGCTCTAGCAAGGCAGCTAGACAAGCAGAGTGCACCCAGAACCTGGCCCTG------------------------ATGACTTCTCTGAAGCTCATTCTCTCATTTTCCAGAAGGGA------GAATAACAGGACATGTGCCACTTGCTTCTGGCTA--GGAGGGAAAGCACCTGGCACCATGCTTGACATCCAGGAGGCACCAG--GCACCTGGCTCATTC-ACCTGTGTGCCAC-CATAAACAAAAC-AGTCCTGGGAG--GCAAAGAAGCCTGGGAGCAGGGCCCTCAGGCTCTGTGCTACTATTGCAACTTCTTGaattaaattaattaaaattatttatttatttatttgtttgaaaataaaaaGTTGCAATGTGAAATAAAGGGATGGTTATTATTAATGACATAAGCATGCTATTAACAACCAAAACTGTAACTAAAGATCCCAGAGTCTTTCAACAATTTGAAAACATGCATGATTAGCAGTCCAAGTACCCAGA-AACAACT---GGACACCCACAACAGCTCCACGCTGACTCCACTACCAAG-GATACATTTAGCATAGAGTGGTCTTTCCATGTTGTCCTCCTGTGTGATCCTAGAGGCCCTCAGGGGTTGCTGAGGAAGCCAGGTGCCTCAGAG-CTAATGTCG-CAAGAGGCGCGAGGGTCATTCTTATTGCAGAAGTACCTGCAATAGGTAGCATACTCAGAGCTCAGCTGACACCACATGCTACTGTCACTCAAGAGCCTGTTGGACAAAGG--------------CATCCAACTGCAACCCAGCCTGGCGCCAGAATACGTGTAGAGTGAGTGGG------------------------------------GCCTC-------------TGTGGGG-----------AAGGTGGGACTGGGGAGGACCAGACT--------------------------------CCACGGGGCCCTC----------------------------------CAAGA---AGGTGCATCCT----------GGCAGCTGGGGAGACCGATGGGAACGC----------GTCCAGCTG--TGCTCTCCCCTGACACCCTAC-CCACATGTTGGGACAACAGGAGGGCCCCACACCCAGGACAGTCAC---TCTGACGTCTCCCAAGATCCGGGCTCTTTTGCAGGTTGGAGATTTCATGTGTCTCCCCCTTGGGAGCTGGGAGAGCCGGAGTGCTGGCCTCCAAGCGGCCCCTGAGCCACACAGACAGGCCTCCCT------AG a score=191.0 s hg17.chr7_random 563508 2 + 778964 TG s panTro1.chr6 161030836 2 - 161576975 TG a score=5631.0 s hg17.chr7_random 563510 37 + 778964 ATGGGGCAGAGGGCGTGGCTGAGACAAGCCAGACTGC s panTro1.chr6 161030838 37 - 161576975 ATGGGGCAGAGGGCGTGGCTGAGACAAGCCAGACTGC s canFam1.chrUn 89143487 34 - 91062872 GTGGG---GAAGGTGGGACTGGGGAGGACCAGACTCC a score=2801.0 s hg17.chr7_random 563547 29 + 778964 AGCCAGCCCCCAGCCCAAACAGGTGTACA s panTro1.chr6 161030875 29 - 161576975 AGCCAGCCCCCAGCCCAAACAGGTGTACA a score=19169.0 s hg17.chr7_random 563892 160 + 778964 TCTCTACTTAG--TATCATAAGAAACCTGCAAATTCCAAT--TAGCATGAGACGAATTATCCCTTTTCTTTTAGTTC--AAAAACAGCACTGAACACCGAACTGCCATATAAGAGTTTAA--------------AAAAGCAGGACGTTTTTCAA-------------------TTTT------TTTTTCTAAAAAGCAAAATAAA-- s panTro1.chr6 161031225 163 - 161576975 TCTCTACTTAGTATATCATAAGAAACCTGCAAATTCCAAT--TAGCATGAGACGAATTATCCCTTTTCTTTTAGTTC--AAAAACAGCACTGAACACCGAACTGCCATATAAGAGTTTAA--------------AAAAGCAGGACGTTTTTCAAT------------------TTTT------TTTTTCTAAAAAGCAAAATAAA-- s canFam1.chrUn 89143778 149 - 91062872 CCTCAAGCTGG--TGTCGCTAGAAACCTGTCTATCCCCAT--TATCACGAGACAAATTACCCC--TTCTCTCAGTTCAGAAAAACACCACTGAGCA--GAGCTGCCATGTAACAGTTTGA--------------CTAAGCAGGAAATCTGTCaa----------------------------------ttaaaaaaaaaaaaaaa-- s danRer1.chrNA 255641049 200 - 390413307 TCTCTACTCAC-ATTTCTTAAAGTATCTACATATTTCAAGGATAGCATT-TACTAATCATCTT--TTCTGCTTTTTC---ATTACATTATGGTACTTTGTGTTCCCATACTAATTTTTGCATATATCCTATCCTAAAAACAAAGAGTTTTACTATTAGGACAGGAACTGAACACTTCAGGGAATATCACTAAAAAAAGTAACACAAC a score=112.0 s hg17.chr7_random 564052 9 + 778964 TGG-ATTAGa s panTro1.chr6 161031388 9 - 161576975 TGG-ATTAGa s danRer1.chrNA 255641249 9 - 390413307 TGACATTAA- a score=278004.0 s hg17.chr7_random 564061 2993 + 778964 agccttcccaagacagatgggtacaaacaagcccagactgcaaagatgacagtaaatacctagcaagatcgaccaacagccacaagcatcaggagcatccaggaaaacatgacctcaccaagtgaactaaataaggcaccggtgaccaatcctggggtgacagggataggtgacctttcagacagaaaactcaaaatagctatttgaggaagcccagcaaaatccaagataacatggagaaagaattcagaatcctatcagagaaattaacagatattgaaataattaaaaagcatcaagcagaaattctggcgtagaaaaaaggaattagcatactgaagaatgcattggagcctctcaacagcagaactgactatgtggaagaaagaattagtgagcagcttgaagacgggctatttgaaaatacacagagaagacaaaagaaaaaagaatagaaagaatgaagcacatgtacagcatctggaaaatagcctcaaaggggcaaatctaagagttcctggccttcaagagcaggtagagagaaatcggggtagaaagtttactcaaagggataatatcaaagaattttccaaacctagaaaaagataccagcactgaagtacaagaaggctacagaacaccaaccagatttaacccaataaaactacctcaagacatttaacaatcaaactcccaaagatcaaagatgaagaaagggttctaaaagcagcaagagaaaaaacaacaaatcacgtacaacgcagctccagtacgcctggcaacgacttctcagaggagacctcactgggcaggagacagtggcttggcatatttaaagtgctgaaggaaagtaaacttttaccctagtgtatccagtgaaaaatccttcaaacatgaaggagacagactttcccagacaaacaaaagctgaggaatttcatcaacatcagacctgtcctacaggaaatgttaaagagggttcttcaatctgaaaaataaggatgctgaggagcaataagaaatcatctaaaaggataaaactcagtggtaacagtaagcacacagaacaacacaatgttgtaacactgtaactgtgatgtgtaaactactcacatcttgactagaaagactaaaagatgagcctatgaaaaataactaactggttgggtgcagtggctcacacctgtaatcccagcactttgggaggctgaggtgggcagatcacctgagctcaggagttcaagacaagcctggccaacatgatgaaaccttgtctctactaaaaatacaaaaattagctgggtgtggtggtgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgagctgagatggcgccattgcactccagcctgggtgacagagtgagactccatctcaaaaataaaacaataaaaataaataaataaataaaaataaaaataactacaatgacttttcaagacaaagatataagtaaaaacaacaaaaagttaaaaagctgagggcataaaattaaggtgtagagtttttattcatttttttcttggcttgc----ttgtttttggaatcagtgttcagctatcagtttaaaataatgggttatgttatttgcaagcctcatggtaacttcaaataaaaaacgccacaacagatacacacacacacaaaaaagaaattaaaacataccgccagagaaaatcatcttcataaaaaggaaaacaagaaggcaagaaggaaggaagagcagaccacgaaacaaccagaaaacaacaaaacggcaggagtaagtccttacttatcaataacaacattgaacgtaaccagactaaactctccattcaaaagacagagcggctgaatgggtaaagaaaaacaggacccagcaatctgttgcctacaagaaatacacgtcactaaaaaggcacacgtaggctgaaaataaagggatgcgaaaaaagatattccatacaaatggaaagcaagaaagagcaggaatagctacacttaagacaaaacagatttcaagacgaaaactatactaagagacaaaggtcatcatataatgataaaggggtcaactcagcaagaggatataacaactttaaatatatatgcacccaacactggagtatccagatatataaaccaaatattactagagctaaagagagagacagactccaacacagtaacagctagaggcttcaatgccccacttccagtactggacaaatcatccagagagaaaatcaacaaagaaacatcagacttaatctgtactatagatctaatggacctcataggtatttatagaacattgcatccaacagctacagaatacacattcttctcctcagcacacagatcattttcaaggacagaccatatgttaggccacgaaacaagccttaaaacatgaaactagaaattaataacaagaactttggaaactacacaaatacatggaaattaaataatatgctcctgaatgaccggtgggtcaatgaagaaattaagaaggaaattttaaaaattcttaaatgaaaatggaaacacaatatgcaaaaacagcaaaagcagcactaagaggcaagtgtatagcaattagcacctacattcaaagagcagataacttcaaacagcaacctaacactgcatcgtaaagaactaggaaagcaagagcaaaccaaacccaaaattagtagaagacaagaaataagagcagaaataaatgaaattgaaattaaaaaaaatacaaaagaccaacaaaatgaacagttagatttttggacaagcaaaatcaacacacctttaaccagactaagaaaaagagaagacccaagtaaataaaatcagagatcgaagaggacattacaaacaactgatactacagaaattcaaagcatcattagagactgtgagcaactacactgtgagcaaTGACATCGTG s panTro1.chr6 161031397 2995 - 161576975 agccttcccaagacagatgggtacaaacaagcccagactgcaaagatgacagtaaatacctagcaagatcgaccaacagccacaagcatcaggagcatccaggaaaacatgacctcaccaagtgaactaaataaggcaccggtgaccaatcccggggtgacagggataggtgacctttcagacagaaaactcaaaatagctatttgaggaagcccagcaaaatccaagataacatggagaaaaaattcagaatcctatcagagaaattaacagatattg--ataattaaaaagcatcaagcagaaattttggcgtagaaaaaaggaattagcatactggagaatgcatcggagcctctcaacagcagaactgactatgtggaagaaagaattagtgagcagcttgaagatgggctatttgaaaatacacagagaagacaaaagaaaaaagaatagaaagaatgaagcacatgtacaggatctggaaaatagcctcaaaggggcaaatctaagagttcctggccttcaagagcaggtagagagaaatcggggtagaaagtttactcaaagggataacatcaaagaattttccaaacctagaaaaagataccagcactgaagtacaagaaggctacagaacaccaaccagatttaacccaataaaactacctcaagacatttaacaatcaaactcccaaagatcaaagatgaagaaagggttctaaaagcagcaagagaaaaaacaacaaatcacgtacaacgcagctccagtacgcctggcaacgacttctcagaggagacctcactgggcaggagacagtggcttggcatatttaaagtgctgaaggaaagtaaacttttaccctagtgtatccagtgaaaaatccttcaaacatgaaggagacagactttcccagacaaacaaaagctgaggaatttcatcaacatcagacctgtcctacaggaaatggtaaagagggttcttcaatctgaaaaataaggatgctgaggagcaataagaaatcatctaaaaggatacaactcagtggtaacagtaagcacacagaacaacacaatgttgtaacactgtaactgtgatgtgtaaactactcacatcttgactagaaagactaaaagatgagcctatgaaaaataactaactggttgggtgcagtggctcacacctgtaatcccagcactttgggagactgaggtgggcagatcacctgagctcaggagttcaagacaagcctggccaacatgatgaaaccttgtctctactaaaaatacaaaaattagctgggtgtggtggtggatgcctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgagctgagatggcgccattgcactccagcctgggtgacagagtgagactccatctcaaaaataaaacaataaaaataaataaatgaataaaaataaaaataactacaatgacttttcaagacaaagatataagtaaaaacaacaaaaagttaaaaagctgaggggataaaattaaggtgtagagtttttattcatttttttcttggcttgcttgtttgtttttggaatcagtgttcagctatcagtttaaaataatgggttatgttatttgcaagcctcatggtaacttcaaataaaaaatgccacaacagatacacacacacacaaaaaagaaattaaaacataccgccagagaaaatcatcttcataaaaaggaaaacaagaaggcaagaaggaaggaagagcagaccacgaaacaaccagaaaacaacaaaatggcaggagtaagtccttacttatcaataacaacattgaacgtaaccagactaaactctccattcaaaagacagagcggctgaatgggtaaagaaaaacaggacccagcaatctgttgcctacaagaaatacacgtcactaaaaaggcacacgtaggctgaaaataaagggatgcgaaaaaagatattccatacaaatggaaagcaagaaagagcaggaatagctacacttaagacaaaacagatttcaagatgaaaactatactaagagacaaaggtcattatataatgataaaggggtcaactcagcaagaggatataacaactttaaatatatatgcacccaacactgcagtatccagatacataaaccaaatattactagagctaaagagagagacagactccaacacagtaacagctagaggcttcaatgccccacttccagtactggacaaatcatccagagagaaaatcaacaaagaaacatcagacttaatctgtactatagatctaatggacctcataggtatttatagaacattgcatccaacagctacagaatacacattcttctcctcagcacacagatcattctcaaggacagaccatatgttaggccacgaaacaagccttaaaacatgaaactagaaattaataacaagaactttggaaactatacaaatacatggaaattaaataatatgctcctgaatgaccggtgggtcaatgaagaaattaagaaggaaattttaaaaattcttaaatgaaaatggaaacacaatatgcaaaaacagcaaaagcagcactaagaggcaagtgtatagcaattagcacctacatccaaagagcagataacttcaaacagcaacctaacactgcatcgtaaagaactaggaaagcaagagcaaaccaaacccaaaattagtagaagacaagaaataagagcagaaataaatgaaattgaaattaaaaaaaatacaaaagaccaacaaaatgaacagttagatttttggacaagcaaaatcaacacacctttaaccagactaagaaaaagagaagacccaagtaaataaaatcagagatcaaagaggacattacaaacaactgatactacagaaattcaaagcatcattagagactgtgagcaactacacTGTGAGCAATGACATCGTG a score=100.0 s hg17.chr7_random 567053 1 + 778964 G s danRer1.chrNA 255641297 1 - 390413307 G a score=7111.0 s hg17.chr7_random 567054 27 + 778964 AGCAGCGACACTGTGAGCAGCTACACC s panTro1.chr6 161034392 27 - 161576975 AGCAGCGACACTGTGAGCAGCTACACC s fr1.chrUn 46211117 27 - 349519338 AGCAGCAGCAGTAGTAGCAGCTACAGC s danRer1.chrUn 63186802 27 + 367113659 AGCAACTACACCTTCAACTGCAACTTC a score=259.0 s hg17.chr7_random 567081 4 + 778964 ATGA s panTro1.chr6 161034419 4 - 161576975 ATGA s fr1.chrUn 46211144 4 - 349519338 AGCA a score=1909.0 s hg17.chr7_random 567085 24 + 778964 AGAAAACCGTGagcaacaatatca s panTro1.chr6 161034423 24 - 161576975 AGAAAACTGTGagcaacaatatga a score=18909.0 s hg17.chr7_random 567109 159 + 778964 gcaactacaatatgagcaacgacaccatgagcagctacaccgggagcagctacaccatgaacaactacaccgtgagcagcgacgttgtaagcagctacaccatgaagaacaacaccatgagcaatatgagcaactacaatatgagcaacgacacca------------------------------TGA s panTro1.chr6 161034447 189 - 161576975 gcaactacaatatgagcaacaacaccatgagcagctacaccgggagcagctacaccatgaacaactacaccgtgagcagcgacgttgtaagcagctacaccatgaagaacaacaccatgagcaatatgagcaactacaatatgagcaatgacaccaTGAGAAGCTACACTGTGAGCAGCTACACTGTGA s canFam1.chr15 21133523 135 + 67237905 GCAACCCCCCGATGGGCAACCCCATCATGGGCAACCCCCTGATGGGCAACCCCGCTACGAGCAACTCCCCATTGGGCA------------------ACCCCGTGATGGACAACCCTGTG------ATGGGCAACCCCACTATGGGCAACCCCGCCA------------------------------CAG a score=91.0 s hg17.chr7_random 567267 1 + 778964 A s danRer1.chrUn 63186829 1 + 367113659 A a score=6285.0 s hg17.chr7_random 567268 36 + 778964 GCAGCTACACC---------------------------------------GTGAGCAGCTACACCATGAACTACA s panTro1.chr6 161034636 36 - 161576975 GCAGCTACGCC---------------------------------------ATGAGCAGCTACACCATGAACTACA s canFam1.chr15 21133658 36 + 67237905 GTAACCCCTCG---------------------------------------ATGGGCAACCCCACAACGGGCAACC s fr1.chrUn 46211148 36 - 349519338 GCAGCTACAGC---------------------------------------AGCAGCAGCTACAGCAGTAGCAGCA s danRer1.chrUn 63186830 75 + 367113659 GCAACTACATCTACAACGGTGACTTCAGAAACTACACTTTCAATTGAGATTTCAGCAACTACACCTTCAACTGTA a score=-273.0 s hg17.chr7_random 567304 3 + 778964 -CCG s panTro1.chr6 161034672 3 - 161576975 -CCG s canFam1.chr15 21133694 3 + 67237905 -CCG s danRer1.chrUn 63186905 3 + 367113659 ACT- a score=-71.0 s hg17.chr7_random 567304 6 + 778964 CCGTGA s danRer1.chrUn 63186905 6 + 367113659 ACTTCA a score=57.0 s hg17.chr7_random 567307 3 + 778964 TGA s danRer1.chrUn 63186908 3 + 367113659 TCA a score=396.0 s hg17.chr7_random 567307 3 + 778964 TGA s panTro1.chr6 161034675 3 - 161576975 TGA s danRer1.chrUn 63186908 3 + 367113659 TCA a score=2778.0 s hg17.chr7_random 567310 54 + 778964 GCAATGACATCGTGAGCGGCGACACTGTGAGCAGCTACACCATGAAGAACAACA s fr1.chrUn 46211184 54 - 349519338 GCAGCTACAGCAGCAGCAGCTACAGCAGCAGCAGCTACAGCAGCAGCAGCTACA s danRer1.chrUn 63186911 51 + 367113659 GCAACTACACCTTTAACTGAGAC---TTCAGCAACTACACCTTTAACTGTGACT a score=5007.0 s hg17.chr7_random 567310 22 + 778964 GCAATGACATCGTGAGCGGCGA s panTro1.chr6 161034678 22 - 161576975 GCAATGACATCGTGAGCGGCGA s fr1.chrUn 46211184 22 - 349519338 GCAGCTACAGCAGCAGCAGCTA s danRer1.chrUn 63186911 22 + 367113659 GCAACTACACCTTTAACTGAGA a score=8594.0 s hg17.chr7_random 567332 32 + 778964 CACTGTGAGCAGCTACACCATGAAGAACAACA s panTro1.chr6 161034700 32 - 161576975 CACTGTGAGCAGCTACACCATGAAGAACACCA s rn3.chr14 16701565 32 + 112220682 CAGTGTGAACAGGTGCAGCATGAACAGGTATA s fr1.chrUn 46211206 32 - 349519338 CAGCAGCAGCAGCTACAGCAGCAGCAGCTACA s danRer1.chrUn 63186933 29 + 367113659 ---CTTCAGCAACTACACCTTTAACTGTGACT a score=-391.0 s hg17.chr7_random 567364 31 + 778964 CCACGA------------GCAA---CGGTATGAGCAACTACAATAT s panTro1.chr6 161034732 31 - 161576975 CCATGA------------GCAA---TGGTATGAGCAACTACAATAT s rn3.chr14 16701597 35 + 112220682 GTGTGAACAG--------GTAA---CAGTGTGAACAGGTGCAGTGT s canFam1.chr15 21133697 34 + 67237905 CTACGG------------GCAATCCCGTGATGAGTAACCCCACCAT s fr1.chrUn 46211238 37 - 349519338 ------GCAGCAGCAGCTACAG---CAGTAGCAGCAGCAGCAGTAG s danRer1.chrUn 63186962 28 + 367113659 ---------------TCAGCAA---CTACACCTTCAACTGTGACAT a score=4763.0 s hg17.chr7_random 567395 124 + 778964 AAGCAATG---------------ACACCGTGAGCAGCTACAC-CGTGAGCAGCTACAC------------CATGAGCAGCTACACCATGAACT---ACACCGTGAGCAATGACATCGTGAGTGGCGACACTGTGAGCAGCTACACCATGAAGAAC s panTro1.chr6 161034763 139 - 161576975 GAGCAATGACACCGTGAGCAGCTACACCGTGAGCAGCTACAC-CGTGAGCAGCTACAC------------CATGAACAGCTACACCATGAACT---ACACCGTGAGCAATGACATCGTGAGTGGCGACACTGTGAGCAGCTACACCATGAAGAAC s mm5.chr16 51367739 103 + 98801893 AAGCCAAA---------------AAACCTCAATGAGTTACACACATGAATATTCACAC------------CATGAGCATCCACACTATGAACTTTCACACCATGAGCATCCATAACATGAGTTTCCACAC------------------------- s rn3.chr14 16701632 119 + 112220682 ---------------GCACAGGTACAGCGTGAACAGGTGCAG-CGTGAACAGGTATAG------------TGTGAACAGGTGCAGTGTGCAGT--------GTGCACGGGTACAGCGTGAACAGGTGCAGTGTGAACAGGTGCACTGTAAACAGC s canFam1.chr15 21133731 97 + 67237905 ---------------GGGCAACCCCACGATGCGCAACCCCCC-GACGGGCAACCCCAC------------CATGGGCAACCCCACCATGGGCA---ACCCTGCAA---------------------------TGGGCAACTCCGCTACGGGCAAC s fr1.chrUn 46211275 109 - 349519338 ---------------TAGCAGCAGCAGCAGCAGCAGCTACAT-CAGCAGCAGCTACAG------------CAGCAGCAGCTACAGCA---------GCAGCAGCAGTAGTAGCAGCTACAGCAGCAGCA------GCAGCTACAGCAGTAGC--- s danRer1.chrUn 63186990 130 + 367113659 ---------------CAGCAACTACACCTT---CAATCGTGC-CTTCAGCAACTACACCTTCAACTGGGACTTCAGCAACTACACCTTCAACT---GTGACATCAGCAACTACACCTTCAATCGTGCCT---TCAGCAACTACACCTTCAACTGG a score=11746.0 s hg17.chr7_random 567519 59 + 778964 ACCATGAGCAACAGTATGAGCAACTACAATATGAGCAACGACACTGTG------------AGCAGCTACAC s panTro1.chr6 161034902 59 - 161576975 ACCATGAGCAACAGTATGAGCAACTACAATATGAGCAATGACACCGTG------------AGCAGCTACAC s mm5.chr16 51367842 45 + 98801893 --------------CATGAGTGTCCACAGCATGAGCATCCACACCATG------------AACATCCACAG s canFam1.chr15 21133828 50 + 67237905 CCCGTG---------ATGGACAACCCTGCGACGGGCAACGCCCCAATG------------GGCAACCCCGT s fr1.chrUn 46211384 50 - 349519338 AGCAGCAGCTACAGCAGCAGCAGCTACAGCAGCAGCAGC---------------------AGCAGCTACAG s danRer1.chrUn 63187120 71 + 367113659 GACTTCAGCAACTACACCTTCAACTTCGACATCAGCAACTACACCTTTAACTGTGACTTCAGCAACTACAC a score=12213.0 s hg17.chr7_random 567578 17 + 778964 CGTGAGCAGCTACACCA s panTro1.chr6 161034961 17 - 161576975 CGTGAGCAGCTACACCA s mm5.chr16 51367887 17 + 98801893 CATGAGCATCCACACCA s canFam1.chr15 21133878 17 + 67237905 GATGGGCAACCCCGCCA s fr1.chrUn 46211434 17 - 349519338 CAGCAGCAGCTACAGCA s danRer1.chrUn 63187392 17 + 367113659 CATCAGCAACTACACCT a score=10131.0 s hg17.chr7_random 567595 61 + 778964 TGAACTACACCGTGA---GCAATGACATCGTGAGCAGCGACA-CTGTG-----AGCAGCTATACCATGAA s panTro1.chr6 161034978 61 - 161576975 TGAAATACACCGTGA---GCAATGACATCATGAGCAGCGACA-CTGTG-----AGCAGCTATACCATGAA s canFam1.chr15 21133895 61 + 67237905 TGGGCAACCCCGTGATGGGCAACTCCACCATGGGCAACCCCG-CCATG-----GGCAACC---CCATGAC s fr1.chrUn 46211451 64 - 349519338 ---GTAGCAGCAGCA---GCTACAGCAGCAGCAGCAGCTACAGCAGTAGCAGCAGCAGCTACAGCAGCAG s danRer1.chrUn 63187409 58 + 367113659 TCAACTGCGACATCA---GCAACTACACCTTCAACTGCGACA----TC-----AGCAACTACACCTTTAA a score=8989.0 s hg17.chr7_random 567656 35 + 778964 GAAcaacactatgagcaacaatatgagcaactaca s panTro1.chr6 161035039 35 - 161576975 GAAcaacactatgagcaacaatatgagcaactaca s canFam1.chr15 21133956 35 + 67237905 GGGCAACCCCGTGATGGGCAAGGTCAGCACGTACA s fr1.chrUn 46211515 35 - 349519338 CAGCAGTAGTAGCAGCTACAGCAGCAGCAGCTACA s danRer1.chrUn 63187587 35 + 367113659 TAACTACACTTTCAACTGTGACTGGAGCAACTCCA a score=3199.0 s hg17.chr7_random 567691 42 + 778964 ------------atatgagcaacGACACTGTGAGCA---------------------------------------ACACCGTGAGCAGCTACA s panTro1.chr6 161035074 42 - 161576975 ------------atatgagcaacGACACTGTGAGCA---------------------------------------ACACCGTGAGCAGCTACA s fr1.chrUn 46211550 81 - 349519338 ------------GCAGCAGCAGCTACAGCAGTAGCAGCAGCAGCTACAGCAGCAGCAGCTACAGCAGCAGCAGCTACAGCAGCAGCAGCTACA s danRer1.chrUn 63187622 54 + 367113659 GTTTCAACTGCAAATTCAATAACTACACCTTCAACT---------------------------------------GCAACTACAGTAACTACA a score=100.0 s hg17.chr7_random 567733 1 + 778964 C s danRer1.chrUn 63187676 1 + 367113659 C a score=85131.0 s hg17.chr7_random 567733 920 + 778964 CTGtgagcaactatactgtgagcaactatatgccaataaattggaaaacctagaagaaatggataaattcctagacacatatgacctacacagattaaatcataaatccaaaccttgaacagaccagtaacaagtaatgatattgaagccgcaatgaaaagccactgagcaaagaaaagcccgggtcgcaatatttcactgccaaatgttatcaaacgtttaaagaactaatgtcactcctactcaaactattccaagaactagaagaggaaggaatacctccaaacttaatttatgaggccagtactaccctgataccagaaccagccagatgcaatcgaaaaggaaaactacaggacaatatccctgatgaacactgacgcaaagtttccactgtttcaacagcacatgagaaagatcatttgtcatgaccaagtgagatttattccaggaatgcaaggatggctcaacatacacaaatccatcaatgtgacacatcatatcggcagaatgaaggacaagaactacgtgattatttcaagtgatgctgaaaagtattgataaaattcaacatccctacatgataaaaatcttcaaaaaactgggtatagaaggaacacacctcagtacaataaaagccatatacaagactcacagctagtaccacactgaatggggaaaaattgaaagcctttcttctaaatctggagcaagacaaggatgctcgctttcaccactgttagttaacacagtactggaagctctagctagaacaattagacaagaaaaataaagggaatccaaattgaaaaggaagataattattcttgtttgcagatgatataatcttacatttggaaaaacctaaagattccacaaaaaacctattagaacagataaacaaattcagtaaagttgca s panTro1.chr6 161035116 920 - 161576975 CTGtgagcaactatactgtgagcaactatatgccaataaattggaaaacctagaagaaatggataaattcctagacacacatgacctacacagattaaatcataaatccaaaccttgaacagaccagtaacaagcaatggtattgaagccgcaatgaaaagccactgagcaaagaaaagcccgggtcgcaatacttcactgccaaatgttatcaaacgtttaaagaactaatgtcactcctactcaaactattccaagaactagaagaggaaggaatacctccaaacttaatttacgaggccagtactaccctgataccagaaccagccagatgcaatcgaaaaggaaaactacaggacaatatccctgatgaacactgacgcaaagtttccactgtttcaacagcacatgagaaagatcatttgtcatgaccaagtgagatttattccaggaacgcaaggatggctcaacatacacaaatccatcaatgtgacacatcgtatcggcagaatgaaggacaagaactacatgattatttcaagtgatgctgaaaagtattgataaaattcaacatccctacatgataaaaatcttcaaaaaactgggtatagaaggaacacacctcagtacaataaaagccatatacaagactcacagctagtatcacactgaatggggaaaaactgaaagcctttcttctaaatctggagcaagacaaggatgctcactttcaccactgttagttaacacagtactggaagctctagctggaacaattagacaagaaaaataaagggaatccaaattgaaaagaaagataattattcttgtttgcagatgatataatcttacatttggaaaaacctaaagattccacaaaaaacctattagaacagataaacaaattcagtaaagttgca a score=95516.0 s hg17.chr7_random 568974 1034 + 778964 gcacctgtagtcccagctactcgggaggctgaggaaggagaatggcgtgaacctgggaggcggagcttgcagtaagcagagatcgcaccactgcactccaccctggatgacagagcgagact--gtctcaaaaaaaagaaagaaaactataaaccactgacatgagaaaactgaagaggacacacacaaaaaatggtaacatactccatggactggaagaatcaatattgtccatactacccaaaatgtccatactacccaaagcaatttacagactcaacgcaatccctatcaaaataccaatgacattcttcacagaaatagaaaaaataatcctaaatttatatggaacctcgaaagacgttgaatagccaaagccatcctgagcaaaaaacaaaacaagacaaaaacaaacaaaaaactggagggatcacattacctgacttcaatttatactacagagctacagcgaccagaacagcttggcactggcataaaaacagacacacagaccaatggaacagaatagagaagccagaaattaaatccatacatttacagtgaacttattttgacaaaggtgccaaggacatatcttggggagaggacagtttcttcaataaatggtgctgggaaaactggaactccatatgcagaaaaatgaaactggacccctatctctcaccatgtacaaaaatcaaatcaaaatagattaaagacctcaatctaagacctcaaactatgaaaccactaaaagaaaacattggggaaactctctgggacatggcctgggcaaatgggatcacatcaagttaaaaagcttctgcacagcaaataaaacaatcaatagtgaggagacaacccacaggatgggagcaaacagctgcacaaatacccatctgacaagggactgacaaccagaatccataaggagctcaaactcaatagaaaaaaatctaataacgcgatttaaaaatggacagatctgaatagacatttctcaaaagaaggcatacaaatggcaaacaggtaCTTG s panTro1.chr6 161036042 1036 - 161576975 gcgcctgtagtcccagctactcgggaggctgaggaaggagaatggcgtgaacctgggaggcggagcttgcagtgagcagagatcgcaccactgcactccaccctggatgacagagcgagactctgtctcaaaaaaaagaaagaaaactataaaccactgatgtgagaaaactgaagaggacacacacaaaaaatggtaacatactccatggactggaagaatcaatattgtccatactacccaaaatgtccatactacccaaagcaatttacagactcaatgcaacccctatcaaaacaccaatgacattcttcacagaaatagaaaaaataatcctaaatttatatggaacctcgaaagacggtgaatagccaaagccatcctgagcaaaaaacaaaacaagacaaaaacaaacaaaaaactggagggatcacattacctgacttcaatttctactacagagctacagcgaccagaacagcttggcactggcataaaaacagacacacagaccaatggaacagaatagagaagccagaaattaaatccatacatttacagtgaacttattttgacaaaggtgccaaggacatatcttggggaaaggacagtttcttcaataaatggtgctgggaaaactggaactccatatgcagaaaaatgaaactggacccctatctctcaccatgtacaaaaatcaaatcaaaatagattaaagacctcaatctaagacctcaaacgatgaaaccactaaaagaaaacattggggaaactctctgggacatggcctaggcaaatgggatcacatcaagttaaaaagcttctgcacagcaaataaaacaatcaacagtgaggagacaacccacaggatgggagcaaacagctgcacaaatacccatctgacaagggactgacaaccagaatccataaggagctcaaactcaatagaaaaaaatctaataacgcgatttaaaaatggacagatctgaatagacatttctcaaaagaaggcatacaaatggcaaacaggtaCTTG a score=300.0 s hg17.chr7_random 570008 1 + 778964 G s panTro1.chr6 161037078 1 - 161576975 G s fr1.chrUn 46211631 1 - 349519338 G a score=13358.0 s hg17.chr7_random 570009 193 + 778964 CAGGAACGTGACAAACACTCAT--CTCTGAAA-----AGCTGTCCATGCATCCCCAGTCTCTCCTGTAACATCTGTTGCTCCCGGAAGGTCTCTCTTGA---------CAAGAAC-AGGCCTG-----GTGGCCTCACCAGCAGCAC-----ACATCGAGCAGGAAAACTGCA---GCAA----AGCTG-AGCAGCTGC-----CGACTGCAGGCCTGGCGACAACCAGGGCA- s panTro1.chr6 161037079 193 - 161576975 CAGGAACGTGACAAACACTCAT--CTCTGAAA-----AGCTGTCCATGCATCCCCAGTCTCTCCTGTAACATCTGTTGTTCCCGGAAGGTCTCTCTTGA---------CAAGAAC-AGGCCTG-----GTGGCCTCACCAGCAGCAC-----ACATCAAGCAGGAAAACTGCA---GCAA----AGCTG-AGCAGCTGC-----CAACTGCAGGCCTGGCGACAACCAGCGCA- s fr1.chrUn 46211632 191 - 349519338 CAGTAGCAGCAGCAGCAGTAGT-------AGC-----AGCTACAGCAGCAGCAGCAGCAGCTACATCAGCAGCAGCTACAGCAGCAGCAGCTACAGCAG---------CAGCAGC-AGTAGTA-----GCAGCTACAGCAGCAGCA------GCAGCAGCTACAGCAGCAGCA---GCAGCTACAGCAGTAGCAGCAGCA---GCAGCTGCAG---CAGCAGCAGCTACAGCA- s danRer1.chrUn 63176105 234 + 367113659 CAGCAACTATACCTACAATTGCAACTTCGAAAACTACACCTTTAAATGTGACTTCAGTAACTACAGCTATAACTGTGACTTTAGAAACTACACCCTCAAATGGGACTTCAGTAACTAAACCTACAACTGCGACTTCAACAGCTTCACCTACAGCTGCGACTTTGGAAACTACGCCTTCAACTGCGACTTCAGCAACTACATCTACAACTGCAATTTTAGCGACTACAACTGCGA a score=1394.0 s hg17.chr7_random 570202 8 + 778964 CCCCTGCA s panTro1.chr6 161037272 8 - 161576975 CCCCTGCA s danRer1.chrUn 63176339 8 + 367113659 CTTCAGCA a score=77097.0 s hg17.chr7_random 570210 869 + 778964 GGGCGAAGTCCATGAGTCACCCACCTGAGGGCGGCACAGGGCAGTTTGTTCAAGGCCTGCTTCACAACTGCACGGCCATACGTCCGTCCTGCCTGCCTCGCCGGGGTTCTGGGTGTGGTCAGTGTCCTGGGCTCGGAGCTGCAGTCATGTGAGCGTGGGGAGATGCATTAGCCCCTGCCGCACTGGGACACCCCCTTTCCACAACTTCAGACACCATCCCGGGGCCTAAGGCTCCAGGGCGGCTAGACCGCCTGTGTCCTGACCTTGCTCTGAGGCTCACCTGGCTGTGCTACCTGAGTGAGCTCTGAGGCCTCTGAGCCTTGTAAGGAGGAGATGAAGTTATTTCCAGGCCCTTCCAGTGAAGTTCAGTGATTTAAGCCGAGTCTAGCAGGCTGCTGGAAGGTTTCCTACGAGTCAGAAGGCAGTCAGGACCTTCTGTGCAGAGAGGATGGGGTCCCAGGGCACCAGTCCCTGGGTTGTTGAGGGGGTGGAGGTGTCTGCAAGGAGCCCACATGGAGCTCCAGGACGGGGTCGCAGGGCTGATCAGAGTAAAAGGGGCAGCACCGTGACTCCACACGAAACTCACGTGAAGGGCCGTGCAGGGTCT-CTAATAGGACGCAAACCCCATTGGGAAGAAACgggccatgctggaagaattgtcttgggccacacataaaataacactaacactaatgatagctgacgagctaaaagaaaaaaaaaaatcacaaaaacaatctcgtaacattttaagaaagtttatgaattggtgttgggcagcattcaaagccgtcccgggctgcatgtggcccacgggccgcaggttggacaagcttgCTTTAGATCAACAATGTGATGTCAGCTTTCTA s panTro1.chr6 161037280 849 - 161576975 GGGCGAAGTCCATGAGTCACCCACCTGAGGGCGGCACAGGGCAGTTTGTTCAGGGCCTGCTTCACAACTGCACGGCCATACGTCCGTCCTGCCTGCCTCGCCGGGGTTCTGGGTGTGGTCAGTGTCCTGGGCTGGGAGCTGCAGTCATGTGAGTGTGGGGAGATGCATTAGCCCCTGCCGCACTGGGACACCCCCTTTCCACAACTTCAGACACCATCCCGGGGCCTAAGGCTCCAGGGCGGCTAGACCGCCCGGGTCCTGACCTTGCTCTGAGGCTCACCTGGCTGTGCTACCTGAGTGAGCTCTGAGGCCTCTGAGCCTTGTAAGGAGGAGATGAAGTTATTTCTGGGCCCTTCCAGTGAAGTTCAGTGATTTAAGCCGAGTCTAGCAGGCTGCTGGAAGGTTTCCTACGAGTCAGAAGGCAGTCAGGACCTTCTGTGCAGAGAGGATGGGGTCCCAGGGCACCAGTCCCTGGGTTGTTGAGGGGGTGGAGGTGTCTGCAAGGAGCCCACATGGAGCTC-------------CAGGGCTGATCGGAGTAAAA--------TCTGTGACTCCACACGAAACTCACGTGAAGGGCCACGCAGGGTCTGCTAATAGGACGCAAACCCCATTGGGAAGAAACgggccatgctggaagaattgtcttgggccacacataaaataacactaacactaatgatagctgacgagctaaaagaaaaaaaaaaatcacaaaaacaatctcgtaacattttaagaaagtttatgaattggtgttgggcagcactcaaagccgtctcgggccgcatgtggcccacgggccgcaggttggacaagcttgCTTTAGATCAACAATCTGATGTCAGCTTTCTA a score=48015.0 s hg17.chr7_random 571079 524 + 778964 ACAGACAGCTATTGATACAGAGTAGGCTGCTTATACATAGCTACCAATACAGTTATAGCATTTATAGGCAGCTGTCGACACATAGTTATGGTATTTTTAGAGTTACGGTATAGTTATACTGAGTTACACCGTTTACAG----CTAGCAATAGAGTTCCAGTATTTACAGAGC----GTGCTCCACAGA------------------------------GTTCCAGTATTTACAGACAGCTATCGAT--ACAGTGATGGTATTTTTAGACAGTGACGGTATTTTTAGACAGTGATGGTTATTTTTAGACAGTG-------ACAGT---------------------------AGGCTTACACC-------------------------------------GACAGCTATCAG------------------------CTATGG-------------------------------AGCTTCAGTATTCACACAGAGCTC----TCCATACAGAGTCATCA-------------------------------CACTGTTTTGAGGAGTAAGACTTGGCCCATGACACA--GACTCCACTTTCCTTGTGGGCCATGCTCTGCCTCAGGCTTAAGGAAGGTGGGAGAGAAAAACCAGCC--GGCCGCCTGCACTTCTTGCTGGGCTCTGTTCTTG-CCCTGGCCCCTTGAACTGCCCTCCGC-AGCCCAAATATTTA s panTro1.chr6 161038129 526 - 161576975 ACAGACAGCTATTGATACAGAGTAGGCTGCTTATACATAGCTACCAATACAGTTATGGCATTTATAGGCAGCTATCGACACACAGTTATGGTATTTTTAGAGTTACGGTATAGTTATACTGAGTTACACCGTTTACAG----CTAGCAATAGAGTTCCAGTATTTACAGAGA----GTGCTCCACAGA------------------------------GTTCCAGTATTTACAGACAGCTATCGAT--ACAGTGATGGTATTTTTAGACAGTGACGGTATTTTTAGACAGTGATGGTTATCTTTAGACAGTG-------ACAGT---------------------------AGGCTTACACC-------------------------------------GACAGCTATCAG------------------------CTATGG-------------------------------AGCTTCAGTATTCACACAGAGCTC----TCCATACAGAGTCATCC-------------------------------CACTGTTTTGAGAAGTAAGACTTGGCCCATGACACA--GACACCACTTTCCTTGAGGGCCATGCTCTGCCTCAGGCTTAAGGAAGGTGGGAGAGAAAAACCAGCC--GGCTGCCAACACTTCTTGCTGGGCTCTGATCTTGACCCTGGCCCCCTGAACTGCCCTCCGCAAACCCAAATATTTA s canFam1.chrUn 89147127 679 - 91062872 ACAGGGACGTATTCATACAG-TTATACTCTTTACAGGAACCTGTCCATACTGTTATACTCTTTACAGGGACCTGTCCATACATAGTTAGATTCTTTACAGG-----GACCTATTGATGCACAGTTATACTCTTTACAAGGACCTGTCAAGACAGTTACACTCTTTACAGGGACCTGTTGATACACAGACAGACTCTTTTTTGGGGTGTGTTGATACACATTATACTCTTTACAGAGACCTGTCGATACACAGTTATACTCTTT----ACAGGGAACTTGTCCATATACAGTTATATTCTTTACAAGGGCGTGTTGATACACAGTTAATATTCTTTACAGGGGCCTATGGACAGACTTACACTTTTTAAGGGACCTATAGATACAACTGTACTATTTATAGGGAGCCATCAATACAGTTATAGTCTTTAAAGGGACCTATGGACACAGTTACACTATTTGAAAGCTATAACATAACTATGCTATTTACAGGTAGCTCCTAATCGATACACAGTAATACTGTTTAAAGATAGCTGTTATTACATAGTTAACAGTATTTTGAGGAAAACCATTTCACATGTGACACAAGGAAACCACTGTCTTTGCTGTTCTTGCTTCACCTGAAGC------AAGCT------GATAAACTGTCCCAGGCAG---GGAAGTTTCACTGGACTCCGTTCTGG-CCCTCACTTCCTGTA-------------------------- a score=204.0 s hg17.chr7_random 571603 81 + 778964 GCCAGTGCCAGAAGTGCCTGCTGCAAGTGCCGGGCAGCATGGACACTGACCCCGCACTCTGCCCACTTTCTCCCCACTGGG s canFam1.chrUn 89147806 51 - 91062872 GCCAG----------GTCTCTAGAGAGTG----------------CTGACCCATCATCTTGTC----TCCTCCTCCCTTGG a score=895.0 s hg17.chr7_random 571684 39 + 778964 CAGAGC-----------CTGATGTCCTCAGGGGCCCTCTGTGCTGCCTGG s rn3.chr5 13653822 39 - 173106704 CAGGGC-----------CTGCTGTCTCTTTGGTCCCGCTCTGCTGCCTGG s canFam1.chrUn 89147857 46 - 91062872 CAGAGCTCATTTCTACTCTGGT-TCTCCCACTTCCCAATCTGCTATG--- a score=2930.0 s hg17.chr7_random 571723 139 + 778964 TGCCGAACCCACGCCAGCTCCAGGAGGGGCCGGCCAGCGTACATGGTGACTCAACTTCCGCTGGCCTGATGAGACCAAGGGGGGTGAACAAA------GGCTCCT-GGTGGGAAAGGGTCCCCCTGTGTCTCTGCGCACAGCCCCT s canFam1.chrUn 89147903 116 - 91062872 TGCTGATCCCAC-CCAGCTTCAGGAGG----GGCCAGTGTACA------------CTCAGCTGGCCC--TGAGAC---------TGAACACACAGACTGGTTCTTGGGTGGAGGAAGGT--CCCTTTGTCTCTGCCTGCACCCTCA a score=18801.0 s hg17.chr7_random 571862 171 + 778964 AGGCAGCCACTCTGCTGCTGGAGGGAGAGAGCCGGAGAATGAAGCCTGGCCATGGAGGCAAAGCAGGGGTGTCCTGAGCAGGTGCTATGTCACACCTGGAGCCGGCCCTACGGGTGGACCCCAGCAGCACAGACGAGGGAGCGAGTCAGGGCTTCCATCCTGGCCCCAGAA s panTro1.chr6 161003218 170 - 161576975 AGGCAGCCACACTGCTGCTG-AGGGAGAGAGCCCGAGAACGAAGCCTGGCCATGAGGGCAAAGCAGGGGTGTCCTGAGCAGGTGCTGTGTCACACCCGGAGCCGGCCCTACGGATGGACCCCAGCAGCACAGACGAGGGAGCGAGCCAGGGCTTCCATCCTGGCCCCAGAA s canFam1.chrUn 89148019 140 - 91062872 ---TTATAACTC---------ACAGAGATA-CCTGAGGACAAAGCCC-----TGGTAGCCAAGTA--GACATCCTGGGTAGGCAGTGTGCCATGCCTGGACCCTGGTGTAAG-----------ACATCACAAACATGCAGCCGAGTGGGGGCTTCTGCCCTGGGCCCTAAA a score=14784.0 s hg17.chr7_random 572033 164 + 778964 TACCCCGAGTGACTCTTCAACTCACCACCTTCAAGCCATTTCTCATCAGGAAACCTACCTCTTCAAGGCTGAAACCTGGAACCATGCACAGTGAAGAGGCCAGACACAAAAGATCACATGTCTGACTACGATGACAGGTAACTCAGAGACAGAAAGATCAGAGG s panTro1.chr6 161003388 164 - 161576975 TACCCTGAGCGACTCTTCAACTCACCACCTTCAAGCCATTTCTCATCAGGAAACCTGCCTCTGCAAGGCTGAAACCTGGAACCATGCACAGTGAAGAAGCCAGACACAAAAGATCACATGTCTGACTACGATGACAGGTAACTCAGAGACAGAAAGATTAGAGG a score=50070.0 s hg17.chr7_random 572197 380 + 778964 TCACTCAGCTTCCC-CGGTGGCCACAGTGTGTAGCATTTTAGCAAGTCACTGGGGCCTCAGATCCAAGACATGCCCTCCAGGCCAGATTCTGCCAGCAGTAAAGCCAACACTCAGCCCCATCTGTAGGACTCCTGCCTGCCTGCCTGCCCGTCTCTTGGTGGGTTCCAAAGCCCAACGACATAATTATCC---CCAACAAACCAACCCCGA--CTCCACTCTTCTCCCAGTCCAGGTCCACCAACCATGGTGGCTTTTCGGGAAAGTGCGTCTTGATGGATGGGAGCACTAAGGAACCTTCTGCAACTGCTGAAGTGCACACTG----------TGCCTAAGAGACAATAACTACACAAGTCATCCTTTCTAACATCCTTGGAATTCATAACATCA s panTro1.chr6 161003552 380 - 161576975 TCACTCAGCTTCCC-CGGTGGCCACAGTGTGTAGCATTTTAGCAAGTCACTGGGGCCTCAGATCCAAGACATGCCCTCCAGGCCAGATTCTGCCAACAGTAAAACCAACACTCAGCCCCATCTGTAGGACTCCTGCCTGCCTGCCTGCCCGTCTCTTGGTGGGTTCCAAAGCCCAACGACATAATTATCC---CCAACAAACCAACCCCGA--CTCCACTCTTCTCCCAGTCCAGGTCCACCAACCATGGCGGCTTTTCGGGAAAGTGCGTCTTGATGGATGGGAGCACTAAGGAAGCTTCTGCAACTGCTGAAGCGCACACTG----------TGCCTAAGAGACAATAACTACACAAGTCATCCTTTCTAACATCCTTGGAATTCATAACATCA s canFam1.chrUn 89149899 362 - 91062872 TCACCCTGCTCCCTATTGTTGGCAGAGTTTGTAAAGTTCTATAAGCAAACTGTGACCTCAGATACATGACACAGCCTCTAAACTGACTTCTGCCAACACAAAAGCCAGTACTCTG----ATCT-----------------CTGCTTGTCTGTCTCTCTGTGGGTCGCAAGGCCCAAAGA-GGGATCAGCCTGACTGACATACCAACTCAGATCCACCCTTCTCCTCCCAGGCCTGGCACGCCAACTGCTCTGGCTCATCAGGTAACTCTGCCTTGACAGACTGGCATATGAAAGACACCTCTGGAACTA-TGGAGCATACATGGTTAGGCTGTTTTCCAAAGAGGAAAT---------GGTCCTC--TTCCATGTTCCTCACAAGGAAGAATAACA a score=14302.0 s hg17.chr7_random 572577 132 + 778964 AA--CATTAAAACAG----TTCAGCTCTCTTCTAGTTTTTCCAAGATGTGAAC-AGGAACGTCCTGTGACTAG-----------GAATAATGAAAGGACATTTGGTGCAT---ACAGCACTCTGAAAAAAGAACAAGTGAG----TTAGTTAAAAAC s panTro1.chr6 161003932 132 - 161576975 AA--CATTACAACAG----TTCAGCTCTTTTCTAGTTTTTCCAAGATGTGAAC-AGGAACGTCCTGCGACTAG-----------GAATAATGAATGGACATTTGGTGCAT---GCAGCACTCTGAAAAAAGAACAAGTGAG----TTAGTTAAAAAC s canFam1.chrUn 89150261 135 - 91062872 AATGCACTGAAACAA----TTCAACTCTTCCCTA-CTTCCCAGAGACATGAACTAAGGACACCTTGTCACTGA-----------AAATGAT-AAGAGAGGTTTGGTATACAAGGTAACAGTTTTTAAAAAG-ACAAAGGAG----TGAGTTACAAAT s galGal2.chr14 16277769 141 - 20603938 AG--CAGTGGAACAGGCCATTCACCCTGCTTTTGGATCGTCCACA--GTTGAC-TGGGACCATATGTGACAAGCTTATGTACCTGAA--ATGAATGCACAAGTGCTGAAA---AC------CAAGGGGAAGAACAAATGGGAAGCTAGATTTAAAAT a score=290.0 s hg17.chr7_random 572709 17 + 778964 AGCACGTCAGCCCGCCT s panTro1.chr6 161004064 17 - 161576975 AGCACGTCAGCCCGCCT s mm5.chr5 12661919 17 - 149219885 AGCACATGAGGACACTT s canFam1.chrUn 89150396 8 - 91062872 AGCATG---------AT s galGal2.chr14 16277910 15 - 20603938 --AATGCCCCCTGACCC a score=-1062.0 s hg17.chr7_random 572726 21 + 778964 GTGTTGGAGAGAGGAACA---------GAC s panTro1.chr6 161004081 21 - 161576975 GTGGTGGAGAGAGGAACA---------GAC s mm5.chr5 12661936 29 - 149219885 CTATT-AACAGAAGCACATGGTTTCAGGAC s canFam1.chrUn 89150404 18 - 91062872 TTGGTGAAGAGGAGG------------GAT s galGal2.chr14 16277925 23 - 20603938 TCCCAAAAAAGAAGAAAAAT-------GAC s fr1.chrUn 293214317 21 - 349519338 GTCTCGAGGTGATGAACA---------AAT a score=0.0 s hg17.chr7_random 572747 7 + 778964 TGTCCAG a score=1167.0 s hg17.chr7_random 572747 4 + 778964 TGTC s panTro1.chr6 161004102 4 - 161576975 TGTC s mm5.chr5 12661965 4 - 149219885 TGTC s canFam1.chrUn 89150422 4 - 91062872 CACC a score=1104.0 s hg17.chr7_random 572751 3 + 778964 CAG s panTro1.chr6 161004106 3 - 161576975 CAG s mm5.chr5 12661969 3 - 149219885 AAG s canFam1.chrUn 89150426 3 - 91062872 CAG a score=0.0 s hg17.chr7_random 572751 3 + 778964 CAG a score=-1168.0 s hg17.chr7_random 572754 3 + 778964 -GAG s panTro1.chr6 161004109 3 - 161576975 -GAG s mm5.chr5 12661972 3 - 149219885 -CAG s canFam1.chrUn 89150429 3 - 91062872 -GGG s fr1.chrUn 293214338 3 - 349519338 ACA- a score=-176.0 s hg17.chr7_random 572754 3 + 778964 GAG s fr1.chrUn 293214338 3 - 349519338 ACA a score=924.0 s hg17.chr7_random 572757 11 + 778964 AAACACCAGTT s fr1.chrUn 293214341 11 - 349519338 AAACACAAACT s danRer1.chrNA 52198528 11 + 390413307 AAAGGCAGTTT a score=4555.0 s hg17.chr7_random 572757 11 + 778964 AAACACCAGTT- s panTro1.chr6 161004112 11 - 161576975 AAACACCAGTT- s mm5.chr5 12661976 11 - 149219885 AAACTCCCAGT- s rn3.chr12 16023437 11 + 46649226 AAAATCCTATT- s canFam1.chrUn 89150434 11 - 91062872 AAACTCCTGTT- s fr1.chrUn 293214341 11 - 349519338 AAACACAAACT- s danRer1.chrNA 52198528 11 + 390413307 -AAAGGCAGTTT a score=287300.0 s hg17.chr7_random 572768 199 + 778964 ACCTGCGGGACGTCATCAAACAGTCGCTGAGCAAAATGGGAAAGCACGTCGTCCACGGACTTCCCGTTGCCAAAATGGATCACTGCGCCTGTGGCTTCAATGGCGGCCACACGGACCTTCCAGTGCTGGTGGGAGATGGTCTGCATCAGGGGCCCGATCAGAGACTCCGACTGCATGTGGAAGTGGTCTGA-----G----GGA-CAGG s panTro1.chr6 161004123 199 - 161576975 ACCTGCGGGACGTCATCAAACAGTCGCTGAGCAAAATGGGAAAGCACGTCGTCCACGGACTTCCCGTTGCCAAACTGGATCGCTGCGCCTGTGGCTTCAATGGCGGCCACACGGACCTTCCAGTGCTGGTGGGAGATGGTCTGCATCAGGGGCCCGATCAGAGACTCCGACTGCATGTGGAAGTGGTCTGA-----G----GGA-CAGG s mm5.chr5 12661987 200 - 149219885 ACCTGAGGGACGTCATCGAAGAGTCTTTGAGCAAAGTGGGAAAGGACATCATCCACCGAGTTCCCACTGCCAAACTGGATCACAGTGCCCGTGGCTTCGATAACGGCTACCCGGACCTTCCAGTGCTGGTGGGAGATGGTCTGCATCAGGGGGCCTATCAAGGACTCCGATTGCATGTGGAAGTGCTCTGT-----G----GGATTAGG s rn3.chr12 16023448 199 + 46649226 ACCTGAGGGACATCATCGAAGAGTCTTTGAGCAAAGTGGGAAAGAACATCATCCACCGAATTCCCATTGCCAAACTGGATTACAGTGCCTGTGGCTTCGATGACAGCTACCCGGACCTTCCAGTGCTGGTGGGAGATGGTCTGCATCAGGGGGCCTATGAGGGACTCCGACTGCATGTGGAAGTGCTCTGT-----G----GGA-TAGG s canFam1.chrUn 89150445 199 - 91062872 ACCTGGGGGACGTCATCAAAGAGCCTCTGAGCAAAGTGAGGAAGCACATCGTCTACTGACTTGCCGTTGCCGAACTGGATCACAGTACCCGTGGCCTCAATGACAGCCACCCGCACCTTCCAGTGCTGGTGTGAGATGCTCTGCATCAGGGGACTGATCAAGGACTCTGACTGCATGTGGAAGTGGTCTGT-----G----AGA-AGAG s galGal2.chr14 16277948 204 - 20603938 ACCTTGGGAATCTCATCAAATAATCGCTGGGCCAGATGAGACAGAACATCATCCACAGACTTCCCATTTCCAAACTGTATCACTGTTCCAGTAGCCTGAATTACATCCACACGAACTCTGTAGTGCTGGTGTGAAATTGTTTGCATTAAGGGCTTTATCAGAGATTCTGACTGCATATGGAAGTGCTCTGTTAGGAG----AGA-GACA s fr1.chrUn 293214354 202 - 349519338 ACCTTGGGCGAGTCATCAAACAATCTCTGAGCCAGGTGAGAGAGTACATCGTCCACGTTTTTCCCGTTACCATGCTGGATGACAACCCCGGTGGCCTCAATGACCGACACTCGAACCCGGGAATGTTGGTGTGTTATTGTCTGCATGAGAGGCTTAACCAGACTCTCAGCCTGCATGTGGAAGTGTTCTAAATG--G----AAA-CAGG s danRer1.chrNA 52198539 203 + 390413307 ACCCGTGGCGAGTCGTCAAACAATCTCTGTGCCAAGTGGGATAAAACCTCATCCACGTTCTTGCCTGCGCTGTACTGAATGACTGCACCGATGGCCTGTGTGGCAGAAACTCTCACTTGGGAGTGCTGGTGTGAAATAGTCTGCAACAGGGGTTTCAGAAGACTCTCAGCCTGAAGATGGAAATGTTCTGA-----GCAAAGGA-CAGA a score=1941.0 s hg17.chr7_random 572967 2 + 778964 GA s panTro1.chr6 161004322 2 - 161576975 GA s mm5.chr5 12662187 2 - 149219885 GA s rn3.chr12 16023647 2 + 46649226 GT s canFam1.chrUn 89150644 2 - 91062872 GA s galGal2.chr14 16278152 2 - 20603938 GA s danRer1.chrNA 52198742 2 + 390413307 AA a score=4314.0 s hg17.chr7_random 572969 21 + 778964 GGCCCCCAGT-----------TACCAGAGCTG s panTro1.chr6 161004324 21 - 161576975 GGCCCCCAGT-----------TACCAGAGCTG s mm5.chr5 12662189 19 - 149219885 GGCTGCTGGT-----------TAT--GCGATA s rn3.chr12 16023649 21 + 46649226 GACTGCTGGT-----------TATGAGAATCG s canFam1.chrUn 89150646 21 - 91062872 GGACACCAGT-----------TACCAGGGCTG s galGal2.chr14 16278154 32 - 20603938 AACTTCAAGTACTCCATTCTCTACATGGGCAA a score=-4624.0 s hg17.chr7_random 572990 109 + 778964 CTCCCACACG------------CCTCGCCCAGCTCTGTGGGCTTCC-AGAGGAC-GGCTGCCT----------GCCTATGAGTTC---CTCACCTCCC----TTCCTCTCCTACGCCAGGTCCTTGCTGCATGAACAGTA s panTro1.chr6 161004345 109 - 161576975 CTCCCACACG------------CCTCGCCCAGCTCTGTGGGCTTCC-AGAGGAC-AGCTGCCT----------GCCTGTGAGTTC---CTCACCTCCC----TTCCTCTCCCACGCCAGGTCCTTGCTGCAGGAACAGTA s mm5.chr5 12662208 101 - 149219885 CAGCTGCATG--------------GGGCCCTGTTCTGT-GGCTACC-ATCAAAC---CTTCCTCTG-------GCCTCTGCTAGC---CTCAGCTCCCACTTTTTCTCTCCAATG--------GTGCTG--GGAGCTGCT s canFam1.chrUn 89150667 108 - 91062872 CTCCCCATCG----GCCTTG-GCCCCGCCTAGCTCCACAGGCTCCCTGGAGGACAGGCCACCTGT--------GCCTTGGAA---------------C----TTCCTGTCCCCACCCAGGTCCCTGCTGCAGGTGTGGCC s galGal2.chr14 16278186 130 - 20603938 ----CGCACTTTGAGCAGGGTGATTTCTGCAGCACTTTGAGCAGCA-AGCTGAT-CAATGTTTACACTATAATGGAGCTGAATGCCAGCCCACAAGCG----CTTCTCCCCCACTGAAATATCATAATCCACGTGCTGTA a score=6017.0 s hg17.chr7_random 573099 33 + 778964 CACAATCCAGGC-TGCCAAGGAGAGCTCTGTACC s panTro1.chr6 161004454 33 - 161576975 CACAGTCCAGGC-TGCCAAGTAGAGCTCTGTACC s mm5.chr5 12662309 33 - 149219885 TATGCTCCAGGC-ATCCGGAGGGATATATACACC s canFam1.chrUn 89150775 34 - 91062872 TTGGGCTCAAGCTTGCCAAGCAAAGCTTTGTACC a score=0.0 s hg17.chr7_random 573132 1 + 778964 G a score=100.0 s hg17.chr7_random 573132 1 + 778964 G s panTro1.chr6 161004487 1 - 161576975 G a score=42768.0 s hg17.chr7_random 573133 320 + 778964 CCCGGCACAGGAAGAGGCTCAGGGACAAGCGTCCCACCCTGATGACACCTGTGCAACCCAGAGGCTTAGGAGGACCAGCGGGGAAAGGCTGGGGGTGCAAACCCATTGTGGCTGAAGACCAGAG-----------AGCCTGGACCTGCTGA-AGCCAAGGTGGAGGCCTGACGGGGACACTGGCCAGAGGAAAGAAGCCGAGCCCAGAAGACA-GAGGCGAGGCCACACTCCCAGCCCCACCTGAGACGAGACCCCAGGCTCCTCCAGGAAGCTGGGCCAGCACCACTCCAGGCAAAGCCACTGCACTTCCTATTTGTAAAGTCCCCGCAGAA s panTro1.chr6 161004488 320 - 161576975 CCCGGCACAGGAAGAGGCTCAGGGACAAGCGTCCCACCCTGATGACACCTGTGCAACCCAGGGGCTTAGGAGGACCAGCGGGGAAAGGCTGGGGGTGCAAACCCATTATGGCTGAAGACCAGAG-----------AGCCTGGACCTGCTGA-AGCCAAGGTGGAGGCCTGAGGGGGACACTGGCCAGAGGAAAGAAGCCGAGCCCAGAGGACA-GAGGCGAGGCCACACTCCCAGCCACACCCGAGACGAGACCCCAGGCTCCTCCAGGAAGCTGGGCCAGCACCACTCCAGGCAAAGTCACTGCACTTCCTATTTGTAAAGTCCCTGCAGAA s canFam1.chrUn 89150809 297 - 91062872 CCTAGCACTGGGAGAGGCACAG---------------------GACAGCCATGTGACCCA-------AACAGCACCAAAGGGAAAAGGCGGGGGGCCTGACTCCATCTGAGCAGGAGGCAGGAGCTGTGAGGAACAGTATGAAGCTGATGACAGTGGCACTGGGTGCCTGAAGGGGACGCTGACCAAAGCAGAGGAATCCAGCCTGGAGGATACCATGCAAGTCCCCAC-ATGGGGTGTGCCTGAAGTCAGACACCCAGCACTACTGTAAAG-------AGCAGTGCTTTGGGCTAAGCCACTCCATTTCCTGTTTGTAAGATCTTCACAGAA a score=14648.0 s hg17.chr7_random 573453 169 + 778964 AGTCAGAACAAGAggtggcaggcgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaactcaggaggcggaggttgcagtgagctgagatcgccccactgcactccagcctgggagacagagtgaaaccctgtctc---------aaaaaaaaaaaaaaaaaaa s panTro1.chr6 161004808 178 - 161576975 AGTCAGAACAAGAggtggcaggcgcctgtaatcccagctacttggcaggttgaggcaggagaatcgcttgaactcaggaggcggaggttgcagtgagccgagatcgccccactgcactccagcccgggagacagagtgaaactccgtctccgaaaaaaaaaaaaaaaaaaaaaaaaaa a score=63285.0 s hg17.chr7_random 573622 538 + 778964 GTCAGAACCAAAGGGTCTCTGGCA-TCCAGGCCGC----CTCTTGCCTCAGCTCTGC-ACTACTTGGGGCCCGTCTGGGAAACGGCTATTCCAGTGAGACTTTGGGTGAGCG-----CCTCAACCTCTC---------------------TGCCGTTGCCCAGTGTGACCGAGACCAGAGGTGAGGCCCCCCACCCAG----GGGAGAGGAAGGCCAGA-GGTGCTGGAGATGAGGGGATGCTCCAGGCAGA-GGCACAGTCCCTCACCCCACAGCAACCAGTGAGCACATACCCCAGCAGGCTGCGCTTGGGGCTGGGGCACAGATGGGCACAGTGCTGTCCTG-TGGAACCTACGGTCCAGGGAGGGAGCTCGTGG------------------------------GGCTGATGTACAGACTGGGTAGGGAAGTGGTTGAGGATGAAGAAGAAATACATTAAATGCCAGGAATTCTCAATGGCCATGTCCATCCAGCCCAAGGTTCTTCCCCAAGCTCCACAGGAGTTCTGGACCATGTGAAATCCAAAGTT---AACCAACGTGGAAATCTCGGCAtttc-------------------------------------------------------------------------------cccaagt---------------ccagctc---------------------ttcctctacttct s panTro1.chr6 161004986 538 - 161576975 GTCAGAACCAAAGGGTCTCTGGCA-TCCAGGCCGC----CTCTTGCCTCAGCTCTGC-ACTACTTGGGGCCCGTCTGGGAAACGGCTATTCCAATGAGACTTTGGGTGAGCG-----CCTCAACCTCTC---------------------TGCCATTGCCCAATGTGACCTAGGCCAGAGGTGAGGCCCCCCACCCAG----GGGAGAGGAAGGCCAGA-GGTGCTGGAGATGAGGGGATGCTCCAGGCAGA-GGCACAGTCCCTCACCCCACAGCAACCAGTGAGCACATACCCCAGCAGGCTGCGCTTGGGGCTGGGGCACAGGTGGGCACGGTGCTGTCCTG-TGGAACCTACGGTCCAGGGAGGGAGCTCGTGG------------------------------GGCTGATGCACAGACTGGGTAGGGAAGTGGTTGAGGTTGAAGAAGAAATACATTAAATGCCAGGAATTCTCAATGGCCATGTCCATCCAGCCCAAGGTTCTTCCCCAAGCTCCACAGGAGTTCTGGACCATGTGAAATCCAAAGTT---AACCAACGTGGAAATCTCGGCATTTC-------------------------------------------------------------------------------CCCAAGT---------------CCAGCTC---------------------TTCCTCTACTTCT s canFam1.chrUn 89151106 699 - 91062872 GTCAGAACGAGAATGTCTCTGATAGTACTGGTTTTGAAGATCTAACCTCACCTCTGCTGCTGCTTGAGACCCATCCATAAGACGGCTATTTCAGAGATGCTTTGGTTGACCTCTAACCCTTAAGTCCTCAGATTGAGGCAGGACATTAATTTATACTGCCCAGTGTGATGGGGATCC-AGGAGAGGCCCCTTACCAGGAGTAGGCAGAGGAGGGGGGGATGGTTTTGGGAA--GGGAAATGCTTGAAGCAGAGGGAAGACTCCTTCATT---TAACAATCAGTGGGCACCT--------GGGAGGCGCCT-----TGCTACATGGG-AGGCACTAGGCCACCCTTCCTGAACTTACAATCTAGTGAGGGAACATGCAAAGCCTGGAAGGCATGAGGAGCAGTCAATCTGGCTGATGCACAGAGCAGGGAGTTAGGTGGTTGGGGGTCAATGAGCAATGAGTTAAAAGCTTGTAATTCCCAATGTC--TGTC--TCCAGCCCAAGCCTC-ACTCTTAGTTCTTCTAGAATTCTGCAGTATTTG-AACCCAAACTTACAACTCAGAATGGAAATCTTGACAATCCATAATGGGAAGGGCTAAAAGGGAGCCCCATTCTTTCTTTGTCTCCTGTTCACCCAAACctccttctccctcatccctcacccaattcaacaggaaaccctgccagctccttatttaacatcaatccacttttctctgtctct a score=19724.0 s hg17.chr7_random 574160 171 + 778964 ggaatctattctccacgca-gctgcagtgatcttttaacaacctgaactcgggtctatcacttc---tattgacaccccctgcacttcccactacattcagaccatcactgggacatcactgggacggcctg--------------agctggccagatccctcactgctttcctgctc-------cctaccgcccA s panTro1.chr6 161005524 171 - 161576975 GGAATCTATTCTCCACGCA-GCTGCAGCGATCTTTTAACAACCTGAACTCGGGTCTATCACTTC---TATTGACACCCCCTGCACTTCCCACTACATTCAAACCATCACTGGGACATCACTGGGACGGCCTG--------------AGCTGGCCAGATCCCTCACTGCTTTCCCGCTC-------CCTACCGCCCA s canFam1.chrUn 89151906 189 - 91062872 gtaatgaattctccatgagcaccagagtgatcttttaaaaatcggcgtctaggcctctctcgccccttctccacaccctccactgcctCTAATAATTTCAAACCCCCAGTAGCTCCCC-------CAGCCTGCCCTCCTTCCCTCCAGCCACCCTGATCTCTTTTTGCTCCTCTGACCTGCCAAGCTAACTGCTCA a score=1667.0 s hg17.chr7_random 574331 20 + 778964 CGGATTTATAGCATCAGTGT s panTro1.chr6 161005695 20 - 161576975 CGCATTTATAGCATCAGTGT a score=35303.0 s hg17.chr7_random 574351 229 + 778964 TCCCTCCTTCGGAAAGCCTTCCCGCCAGCAGGAAGCAGGCGCCTGCTATCATTCCACATCCCAGCCAGGGGAG----GGAAA--------GGGCAAGACCCTGCAGGAATGGCCAGCTAAGGAAAGGGAACGACCGGATCAGATCAGAGCTCTAAAAAAGATGGGGAACGTTATAAAGTGG---AGGGGAGAAGCGGCCTCCTTCCACTTAGGACAGTGGTCCAAGCCAGAGCGGAAAGGCAGG s panTro1.chr6 161005715 229 - 161576975 TCCCTCCTTCGGAAAGCCTTCCCGCCACCAGGAAGCAGGCGCCTGCTATCATTCCACATCCCAGCCAGGGGAG----GGAAA--------GGGCAAGACCCTGCAGGAATGGCCAGCTAAGGAAAGGGAACGACCGGATCAGATCAGAGCTCTAAAAAAGATGGGGAACGTTATAAAGTGG---AGGGGAGAAGCGGCCTCCTTCCACTTAGGACAGTGGTCCAAGCCAGAGCGGGAAGGCAGG s canFam1.chrUn 89152127 241 - 91062872 TCTGTCCTACAGCAAGCCTTCCCAATAAGACAAGGCGGTGGGATG-TACCATG-CACACCCCAGCCTGAGGAAGCATGGAGATATACGTGGGGCAAGATCCTGCAGAAAGGGGCTACTGAGAAAAAGGACTGTCCTCATCACATTATAGTTGTTTAAATACTGGAGAATGGATGAAAGGAACACAAGAGAGAAGCGGCCTCTCTCTACTTAGGACAATGGTCC-ATCCAAAAAGGGAAGACAAG a score=11077.0 s hg17.chr7_random 574580 122 + 778964 GGAGTAGGATGAATGGGACAGAAAGTGAAATGACCAGAGCAGAGTCTCA-AAGCGCGTGCCCTCAACCAGGTGCAAGTCCTGCAAGCCCCCGAGGGAAGGAAAGGGGGCAGCTATCAGGGCAC s panTro1.chr6 161005944 123 - 161576975 GGAGTAGGATGAATGGGACAGAAAGTGAAATGACCAGAGCAGAGTCTCAGAAGCGCGTGCCCTCAACCAGGTGCAAGTCGTGCAAGCCCCCGAGGGAAGGAAAGGGGGCAGCTATCAGGGCAC a score=9206.0 s hg17.chr7_random 574702 63 + 778964 ACCCCACCCCAAA-CCGCCTAACAGGAATTTCTGCGGTGGTTTCCAGGTATCTGGAC----AGAAGCG s panTro1.chr6 161006067 63 - 161576975 ACCCCACCCCAAA-CCGCCTAACAGGAATTTCTGCGGTGGTTTCCAGGTATCTGGAC----AGAAGCG s canFam1.chrUn 89152808 65 - 91062872 ACCGCATCCCAGATCCTCCTAGC---TATTTCAGCGGAGGTTTCTACGAATCTGCATTCCGAGAACCA a score=1048.0 s hg17.chr7_random 574765 72 + 778964 CTGGCTCGTGGGCCCgggtggggtggag--ggggctcaggcagggaggagggtgggaggtgagggtcgcgggag s canFam1.chrUn 89152873 58 - 91062872 -------------CCTGATGGAGGAGAGCAGCAGCT---GCTGGGGCGGGGGTGGGGGGGCAGGGGTCCAGGAG a score=1073.0 s hg17.chr7_random 574765 11 + 778964 CTGGCTCGTGG s panTro1.chr6 161006130 11 - 161576975 CTGGCTCGTGG a score=20733.0 s hg17.chr7_random 629318 2109 + 778964 tctgtgccaggctctgaaaatctgtgacagaggcacataagacatccttgctctcttcatggtgtttacaacctcatgggag--aggcaaacacataaataaaCCTGGTGCCTCGAAGGTTTGGAATCTGAGCACCAGAGCTTTGGAAAGGGCTGGG-TGGGCCGCTCCATACATTTTTGCCC-------------CCTGCAC----------ACGAGACCCAGCA--------AAGCTCCAAC-TCCTCGTCTGGGAACTGAGGGTGATACGG-----CACCAACTGCGTCAGCGGCCCAGTCCACAGCACCAGGGGCTGGGA-AGAGCTT-------TGTAAAACTTTGCTACCGTTGCC---TCCACCACCATCAGCTGGAGGGTCACAGAAGGCGACCCCAGAGCCGGAGCCGGAGCCAAGCCTCAGCCACGAGTCAGCCTCTGCCGGC-TCTGAGGACCCCCAGAGAGGGTGCCCCTCCCCAGTCATGGTTTCCAGGCAGTGACGCAGGGTGGTCTGCACCAGGCACCCTTTTCCAAGGATTTCAAGTTAGGTTTGTTTTCCAGAAAGCCAGTACTGGGGCCAAGCCAGCTCCAGGTGA-----------------------GACAGGCGCTGGGGG----TGCTGGGCTGGCCACTCACATCCACCCTCCCCCGGCCAGC-GGGCAGGGAAGACCCCCCAACCTCCCTTCCTAGAAAGC--GGCCCCATCTAAGAGAAGCCTTGAAATCGGAGCGTCAGGAAAGGAGTGTGGGGCTCAGCCCAGAGCTTTGTCAGCCTCACCAACACGGGGTCCATCCAGAAGGCTCCCGGCCTCCCCGGCCCTTCC-TGGCTTTTAGTCACTGCCGAGCTTGTGA-GCACTTGTGTGCTCCGGTGAAACGG---CCGAGGGCAAGAGCCC--TGGGGGGCAGGGGCGCTGTTCTCAGTTCCTG--GAGGCAGCAGAGTGGG---AGGAAGAGGCCCTGAGATGCCGTCTCAGTGCCCCCACCCCCAGCTTAGGAGAGAGATTACCTGGCCAGGGCCATCTGAGCA-GCAAGATAGA-GAACCTCTCTCCC-----TCAGACCTAGGAAACAACATTTGG--GGTGCAATCGCCCAGGGAACCCAAAAAGGAGCCCCGGGAGGTCCCAGCCCTAGACTCACACTGACAGGTGCTTCTCCAAAGGAGGGGGCTTGTGGGTGGGGGGCAGCCATGCAGATGGGCCCAACAGCCCCTGGGAGCCAAGGCAGGGGCAGCTCAGGCAGGCAGGGCAAGGAGCGAGCGCA-GGCCGAGGATCAGGGTGGGGCAGCATGGGGGCTGGGACCTCTGGTGCCCCCACCACCACCCTGGTGAGGACAGGAGGCACTCCCGGGGCTCGCATGGCTGCTGACCGCAAGCTTATCTCTCCCTGTGTG----CATGTCTGCCCCTGGAGACAGGACTCTCTAGCTGCCAGCCTCCCGGAGAAGCCCCAGGCTGAGCTCACCCAGT-------CCCCTCCAGGCCCTGAA-CTGCCTCTCCTCGTCCCGAGCAAGCACTCTCCTCTGCCCAGACCCCTG-----GCTCCAGGCCAAATCCAGGGCTGCTGAGGAGCCCGAGGCCAGGCCCAGGGGAGATGGAGGAAGTGTCAGGTGCAGGCCAGGTCGC-----TGTTTTCTGATTGATAGGAAAAGAGGGCCAGGCAGGGCCCTGCGGAGGGCAGGGAGGAGT---CCAGGT---GGAACCTGGGAGGGGAGGCAGCTGGCCAGGGCTCCAGGGAGCCTGAAAAGAAAACAGCCCCTCTCCGAAGCCTGGCACTGTCCTTCCTCTCCCCTCAGGCCATGGGCTCCCATGGAAATCAGGCCAGGTCAGAGGGCAC--------------------CACAGTTTAAGTGTGAGCCCCTGCAGATCCCAGATCCGTGAGCTGGGGACAGGTTTTTTG------TGGC-----TGCAGGAGCTCCAGAGGAATGTCGAGGTGGGGCCAGCC--CGGCAGGACACAGGTACCTGGTCCCGCTAATTAATTGCTTCCAGCAGGCTCTGAAGAGCAG-CTGGGCCCAGGAATGCCC--CCTCCAG----------------TGAAGACCGACTCTGTCTAAC---TTGTGAAGGTTTGGATACTGACGGCGAACCGCTCTTAATAAATCTCTCTCTCCTTCTCATGCGCAGCTCATCTGCAGGGCTTGGTGCC------TCTG----GGGGGCCA--------------GGACGGTGGGCAG-ccctcctc-ccgtccccacactcctcccctcccc s canFam1.chrUn 1724240 1973 + 91062872 TCTGTCCCTGGCTCTGAGAATCCACCACAAAG--CCCTGAGACACCAT----CCTTTCCTGAAGGTCACCATCTGGTGGGGACAAGGCCTACGTGTGAC---ACC-------------ATTTGGAAAGAGAGCAC-AGGACTTTGGCCCAGTCCGGGCTGGGGGGCTTCCCTCCTGATCCCCCTGAGGAGTCCTGGCTTGCACTTCCACCCCTGCGGGTCCCAGGACATGGAGAGACCTCTGAGGTCCTCACCTGCGAACCCAGTACAATAAGGGGATCTGCC--CCGCACCCGCAGCTCAGCTCAGGGCACCAGGAGCCCAACCAGAGCTTAGGCAGCTGCTAATCCGTGCTACCAGCACCATCCCCACCACTGCTGGGCGGAGAGTCA---GGGGCGGCTCC----CTGGAAGTGGAGA------------ATGAGTGGACAGATGCCAACCTCAGAGGTGGGCCAGAGAGGATGCGCTGCACAAG----------CAGACC-CAGTGCAGAGCA-TTGGCACCAGGCATCATGTTCCACAGACATCTAGTTTGCGTTGTCTTCCAGAAAGCCAGCACTAGGACCAA-CCAGCTCCAGGGGAGCACGCAGGTCATTTGGGGCCCCGATCGGCACTGGGGGGCATGGCCTGGCTGGCCCCT--CATCTA-CCTTCCCTGGCCAGCAGGGCCAGGAGGGCTATTTGACCTTCCCTCCTAGAAATCCATGCTCCATCT-----CAGCCTTGAAGG-GGTATGTCAGGAACCGAGTGTGGGGCTCGGCCTGGGG-------AGGC-CATGAGGAAGGGCCCCCCCCAGAAGACTCT---GCCCCCTGGTTCTCCTGGGGCCTTTAATCGTCACT--GCATGCAACACCTTTAGATTCACAGATGGAAGGGCTACCCAGGGCTGGGGGCCAGTGGGAGGC-------CTGCTTATAGCTCCTGCTCAGGTA--AAGGTGGGGCTAGGGATGGGTC-----------TGTCTGTGCTTCCAACTC--GCCCGAG---------CCCTGGACATGG-----TGGGCACGAGGGGTAGATGATGATCTAGCCCCGGTGCCAGAGGAGGGAAGGGACATTTTGAAGGTGCTAT-------GAAGCACAATCAGAAAAGTTGGGAGA----GGCATCAGACT-GCA-TGAAAGG-----CTGCCCAGGGTGGGGTT----------------------AGGTGGGCCTGG-ACCCCATGGGTGGC--GGTGGGGGT-----------------CAAGGGCCTACCCCATGACCCTGGA-----------------AGGAGCTGACCTCAATGGGGCCCT-----------------GGGCAG--GGCACTCCTGA--------------------------------CCCTCTGAGTGGTCCCACATCTGCCCACCGTGACAAGGCAC---AG-----GGCCTCCCAGAGAAGCCCCAGACTGAG-TGGCCTGGCTGCGTGGCCCCTCAAAGCCATGAACCTACCCCTCCTCACCCCAAACCAA-GCTGCTCCCCACCTGGACCCCGGGCGGAGCCTCAGACC----------CTGCTGAG-----------CAAGTTCAGGAG-GGCAGAGGAGGCACCAG----AGGCCCAGCCCCACCCGGGCTCACTGCTTCAGCTGCAAGGAGGCT----CAGAGCCCGCTGGAGGACAGGAAGGAGTGAGCCCTGCACGGGATCCCAGGATGGGAGGCA----GCCACGGCTTCCTGCAG----------------------------GCCT--CAGTTTC-----------------CCGTGAACTCCAGTGGAA--CGGGCAGGGCCAGAGAGCACGCTGGGGCAGGTCCTGCATACACACTGCAGGAGGTGGGCCAAGCTGCTCACG---CCCTGGACCAGGAGGAGCGCCCCTGACAGGCTGGCCTCCGTGCAAGC-------AGGAAGGCCAAGGGGAGGCTGGCTGGCGGCAGGAAGCCAGCACCTGATCCCGCTAATTAATGGCTTCAAAC-TGCCCTGAGGAGCAGCCCAAGCCCAGGAGTGTCTGGCCTCCAGACAGTGGCGTCTCCTCTGAAGAGCGGCTTTGTCTAACTTTTTTTTAATGTTTGGAAACCGAAGGCTAACCTTGCCTAAT--CTCCCCATCTTGTCCTCACGGGCAGCCCCTCAGCAGAGCTCAGTAACAGGTGGTCTGGGGTGGGGGGCAGGGGAGGGGCAGAGGGAGGATGGGCAGCCCCTCCTCTCCCTTGCCTCACCTCCCCCATCCCC a score=50583.0 s hg17.chr7_random 632123 560 + 778964 GATCATGGTGGGGCAGGAGTAGGGCCAGGCTTGGAAATCCCCCGAATCCCACTGGCTGGAGCCCAGGGACATGGCTGCACCGGAGGCCAAAGGTCAGGCAGCCAGGAAGCGCACTCAGGCAGGCAGGATGTGTGTTAGGAGGGGGTGGGGGTGGATCAAGGTTGGCCTCACAAGCGTGGGATTTTGCTGATTGGGCTGTGAGGGTCTTGGCCTCCCAACACACCCAAGCCCCCGGCCATGCACGTGGAGCATGCGTGGGGGGCAGGAGGAGCTGGGTTCCCCCTCAGACGTGGAGCCTCCCTCTCTCTCTCTGGAATGGGCACTCATGTGCTTCTGTCCAGGGATTTGAATCTTGAGGGACAGATGAAGGCGCTGGGACACTTTAGAAATTATTCACAGCAACAGCAGTGTCGTCCTAAACCCGGGGGACGGCCCCGCCCTGGCTGGGACCCCAGGGGTCATGTGGCTCTACTGTGTCCCCAGCCCTCCTGCCGTCAGCCGTCCCATTATCTATCCCACCACCATCTACTCTCGTAGTTTGTAACCAAGACGCGCGGCGG s panTro1.chr6_random 738845 555 - 67355074 gatcatggtggggcaggagtagggccaggcttggaaatcccccgaatcccactggctggagcccagggacatggctgcaccGGAGGCCAAAGGTCAGGCAGCCAGGAAGCACACTCAGGCAGGCAGGATGTGTGTTAGGAGGGGGCGGGGGTGGATCAAGGTTGGCCTCACACGCGTGGGATTTTGCTGATTGGGCTGTCAGGGTCTTGGCCTCCCAACACACCCAAGCCCCCGGCCATGCATGTGGAGCATGCGTGGGGGGCAGGAGGAGCTGGGCTCCCCCTCAGAAGTGGAGCCTCCCTCTCTCTCTCTGGAATGGGCACTCATGTGCTTCTGTCCAGGGATTTGAATCTTGAGGGACAGATGAAGGCGCTGGGACACTTTAGAAATTATTCACAGCAACAGCAGTGTCGTCCTAAACCTGGGGGACGGCCCCGCCCTGGCTGGGACCCCAGGTATCATGTGGCTCTACTGTGTCCCCAGCCCTCCTGCTGTCAGCCGTCCCATTAT-----CCACCACCATCTACTCTCGTAGTTTGTAACCAAGAGCCCCGGCGG a score=3813.0 s hg17.chr7_random 632683 29 + 778964 ATAGGAGGTCAGTGATGTAAGACTGACCC s panTro1.chr6_random 739400 29 - 67355074 ATAGGAGGTCAGTGATGTAAGACTGACCC s danRer1.chrNA 180070817 29 - 390413307 ATTGCAAGTCCAGGGAGAGAGGTGGACCC a score=0.0 s hg17.chr7_random 632712 9 + 778964 GGAACTCTT a score=855.0 s hg17.chr7_random 632712 9 + 778964 GGAACTCTT s panTro1.chr6_random 739429 9 - 67355074 GGAACTCTT a score=11896.0 s hg17.chr7_random 632721 83 + 778964 CTGGG-AGCTTCA--GGGTCACAGGCTCT--------GGTCC---TGGCTCTGTGG----AGGCTTCTCAGCAAGGCTGGGGAGAGTGCAACACAGCTGGG s panTro1.chr6_random 739438 83 - 67355074 CTGGG-AGCTTCA--GGGTCACAGGCTTT--------GGTCC---TGGCTCTGTGG----AGGCTTCTCAGCAAGGCTGGGGAGAGTGCAGCACAGCTGGG s fr1.chrUn 315436741 85 + 349519338 CTCGG-GGCTCC---GCCTCAC-GGCTCG--------GGGCT---CCGCCTCGTGGCTTCAGGCTCCGCCCCACGGCTCGGAGCTCCGCCTCACAGCTCGG s danRer1.chrNA 180070846 97 - 390413307 CTGGGTAGCTTGCTTGGGTCATAGGCTCCTAGGTGGAGGGCCAGGGGGCAACCTGG----GACCTACACTGCAAGTCCAGGGAGAGAGGAGTACAACTGGG a score=3910.0 s hg17.chr7_random 632804 41 + 778964 ---TCACCTGAGATCCAGGAGAGAATACAAGATGCA----CAAGGGGC s panTro1.chr6_random 739521 41 - 67355074 ---TCACCTGAGATCCAGGAGAGAATACAAGATGCA----CAAGGGGC s danRer1.chrNA 180070943 44 - 390413307 TAGCTTGCTGGGGTC----AGAGGCCCCTAGGTGGAGGGCCAGGGGGT a score=-1964.0 s hg17.chr7_random 632845 60 + 778964 CAGGTGCAGCAGCTACAC-------------------------------------CGCCAGCACTGCGGGAGGCCGGGGCGAGAGGCTACATCACCA s panTro1.chr6_random 739562 97 - 67355074 CAGGTGCAGCGGCTACACCACCAGCACTGTGGGAGGCCGGGGCGAGAGGCTACATCACCAGCACTGCGGGAGGCTGGGGCGAGAGGCTACATCACCA s fr1.chrUn 315436860 42 + 349519338 CACCTGTAGCAGATTGAA-------------------------------------------CCCAGCTGGAAGTCGT------------CTTCACCT s danRer1.chrNA 180070987 58 - 390413307 CCCCTGGGGC--CTATAC-------------------------------------TACAAGTCCAGGGAGAGAGGTGGACCCCTGGGTAGCTTGCTG a score=-1941.0 s hg17.chr7_random 632905 33 + 778964 GCACTGCAGG-----AG--------GCCGGGGCATGAGGCTGCAGG s panTro1.chr6_random 739659 33 - 67355074 GCACTGCGGG-----AG--------GCCGGGGCATGAGGCTGCAGG s rn3.chr5 170049087 33 - 173106704 GTGCTGTGGG-----AG--------GTAGACACCTGCAATGGCAGC s fr1.chrUn 315436902 35 + 349519338 --ACCAGAGG-----AGAGAACTACGCCCAAGCTGGACCATG---- s danRer1.chrNA 180071045 24 - 390413307 GCATCAGAGGCCCCTAG--------GTGGAGG-------------- a score=173.0 s hg17.chr7_random 632938 13 + 778964 ACCAGCACTGTGG- s rn3.chr5 170049120 13 - 173106704 ACAGGTGCTGTGG- s fr1.chrUn 315436937 13 + 349519338 ACGAGCTCTGGTG- s danRer1.chrNA 180071069 8 - 390413307 ------GCTAGGGG a score=-1456.0 s hg17.chr7_random 632951 53 + 778964 GAGGCCAGGGCATGAGGCTGCAGGACCAGCACTGTGGG-----AGGCCGAGGCATGAG--- s panTro1.chr6_random 739642 42 - 67355074 GAG-----------AGGCTACATCACCAGCACTGCGGG-----AGGCCGGGGCATGAG--- s rn3.chr5 170049133 53 - 173106704 GAGATAGACACCTGCAGTGGCAGCACAGGTGCTGTGGG-----AGATAGACACCTGCA--- s fr1.chrUn 315436950 54 + 349519338 GGTGACAGAGGAGGAAGCTGCAGAACC----TTGTGAGCGAATAGTCTGAGGTATGGG--- s danRer1.chrNA 180071077 53 - 390413307 GCACCCTGGGGCCTATACTGCAAGTCCAGG---GAGTG-----AGGTGGGCTCCTGGGTAG a score=-14706.0 s hg17.chr7_random 633004 119 + 778964 ---GCTG--------CAGGACCAGCACTGTGGGAGGCCAAGGCATGAGGCTGCAGGACCAGCACTGTG--GGAGGCCGATGGGGGAGGCTAGAGCCCCAGCACTGCGGGAGGCCGGGGCGAGAGGCTACATC--- s panTro1.chr6_random 739684 45 - 67355074 ---GCTG--------CAGGACCAGCACTG----------------------------------------------------------------------------CGGGAGGCCGGGGCATGAGGCTACATC--- s rn3.chr5 170049186 119 - 173106704 ---GTGG--------CAGCACAGGTGCTGTGGGAGGTAGACACCTGCAGTGGCAGCACAGGTGCTGTG--GGAGATAGACACCTGCAGTGGCAGCACAGGTGCTGTGGGAGATAGACACCTGCAGTGGCAGC--- s fr1.chrUn 320554128 119 + 349519338 ---GCCC--------CACCCCCAGTTGTGTATTTTACCCCAGCATGAAGCCCCAGCCCCAGTTGTGTA--TTTTACCCCAGCATGAAGCCCCAGCCCCAGTTGTGTATTTTACCCCAGCATGAAGCCCCACC--- s danRer1.chrNA 180071130 119 - 390413307 CTTGCTGGTGTCAAACACCACTAG----GTGGAGGGC--------AAGGGGGCACCCTGAGGCCTATACTGCAAGTCCAGGGAGGGAGGTGGACCCCTGG----GTAGCTTGCTGGGGTCAGAGGCCCCTAGGTG a score=4317.0 s hg17.chr7_random 633022 74 + 778964 --TGGGAGGCCAAGGCATGAGGCTGCAGGACCAGCACTGTGGGAGGCCGATGGGGGAGGCTAGAGCCCCAGCACTG s panTro1.chr6_random 739813 74 - 67355074 --TGGGAGGCCAAGGCATGAGGCTACAGGACCAGCACTGTGGGAGGCCGATGGGGGAGGCTAGAGCACCAGCACTG s rn3.chr5 170049204 74 - 173106704 --TGGGAGGTAGACACCTGCAGTGGCAGCACAGGTGCTGTGGGAGATAGACACCTGCAGTGGCAGCACAGGTGCTG s fr1.chrUn 320554146 74 + 349519338 --TATTTTACCCCAGCATGAAGCCCCAGCCCCAGTTGTGTATTTTACCCCAGCATGAAGCCCCAGCCCCAGTTGTG s danRer1.chrNA 180071153 66 - 390413307 GGTGGAGGGCAAGGG---GGCACCCTGAGGCCTATACTGC---AAGTCCAGGGAGGGAGGTGGACCCCTGGG---- a score=8211.0 s hg17.chr7_random 633123 202 + 778964 ACCAGCACTGCAGGAGGCCGGGGCATGAGGCTGCAGCACCAGCACTGCAGGAGGCCAGGGCATGAGGCTGCAGGACCAGCACT------GTGGGAGGCCGAGGCATGAGGCTGCAGGACCAGCACTGTGGG---AGGCCAAGGCATGAGGCTGCAGGACCAGCACTGTGG---GAGGCCGATGGGGG-------AGGCTAGAGCCCCAGCACTGCGGGAGG--- s panTro1.chr6_random 739692 202 - 67355074 ACCAGCACTGCGGGAGGCCGGGGCATGAGGCTACATCACCAGCACTGCGGAGGGCCGGGGCATGAGGCTGCAGGACCAGCACT------GTGAATGGCCGAGACATGAGGCTGCAGGACCAGCACTGTGGG---AGGCCAAGGCATGAGGCTACAGGACCAGCACTGTGG---GAGGCCGATGGGGG-------AGGCTAGAGCACCAGCACTGCGGGAGG--- s rn3.chr5 170049305 202 - 173106704 ACAGGTGCTGTGGGAGATAGACACCTGCAGTGGCAGCACAGGTGCTGCGGGAGATAGACACCTGCAGTGGCAGCACAGGTGCT------GTGGGAGGTAGACACCTGCAGTGGAAGCACAGGTGCTGTGGG---AGGTAGACACCTGCAGTGGCAGCACAGGTGCTGTGG---GAGATAGACACCTG-------CAGTGGAAGCACAGGTGCTGTGGGAGG--- s fr1.chrUn 320554247 202 + 349519338 CCCAGTTGTGTATTTTACCCCAGCATGAAGCCCCAGCCCCAGTTGTGTATTTTACCCCAGCATGAAGCCCCACCCCCAGTTGT------GTATTTTACCCCAGCATGAAGCCCCAGCCCCAGTTGTGTATT---TTACCCCAGCATGAAGCCCCAGCCCCAGTTGTGTAT---TTTACCCCAGCATG-------AAGCCCCACCCCCAGGGCAGAGCCAAC--- s danRer1.chrNA 180071249 220 - 390413307 GAGGGCAAAGGAGCACCCTGGGGCTTATACTGCAAGTCCAGGGACATCGGGTGACCCCTGGGTAGCTTGCTGGGGTCAGGGGCCCTTAGGTGGAAGGCCAGG----GAAGCCCTGGGGCCTAAACTGCAAGTCCAGGAAGAGAAGTGGACCCCTGGGAAGCTTGCTGGGGTCAGGGGCCCAGGGGTGGTAGGCCAGGTGGCACCCTGTGGGCTATACTGAAAGT a score=3112.0 s hg17.chr7_random 633325 33 + 778964 CCGGGGCGAGAGGCTAGAGCA--------------CTGTGGGAGGCC-- s panTro1.chr6_random 739894 33 - 67355074 CCGGGGCAAGAGGCTAGAGCA--------------CTGTGGGAGGCC-- s fr1.chrUn 320554449 33 + 349519338 AGGAAGTGAGAGACCACAGCA--------------GTGACACAGGCC-- s danRer1.chrNA 180071469 49 - 390413307 CCAGGAAGAGAGGTTGATCCATGGGTAGCTTGCTGCGGTCAGGGGCCCC a score=31322.0 s hg17.chr7_random 633358 399 + 778964 GAGGCGGGAGTC--------------TACACCATCCAGCACTGCCGGAAGCGGAGGCAG-----AGGCTACACCACTAGCACCAAGGGAGGCCAGGGTGGGAGGCCATGGCAGCACAGGAaagctgggatgtttcccaaagccccttcccaatgtggttccggatcagggctggccacaggaggacgtggtctggacttgggaggagaagCTGTGGTTTGGTGTCTGGAGTGGGTGTGGGCCTCGTGGGGCGGGTCTGCTTGTCATCTGGGTGGTTCAGGAGAACGGCCAG----CACCTCCGGCTCCTGCAGGCCTCACCCCACAGCCCTTCAGGG------------CCCTGGGCTGGATGCACGTGT-----GCTCCACAGCCAAGGGCCCGGCTGTCCTGCAGGGGCCTGGCTAAGACAGGAGGT--GGGGAGAGAG s panTro1.chr6_random 739927 399 - 67355074 GAGGCGGGAGTC--------------TACACCATCCAGCACTGCCGGAGGCCGAGGCGG-----TGGCTACACCACCAGCACCAAGGGAGGCCAGGGTGGGAGGCCATGGCAGCACAGGAaagctgggatgtttcccaaagccccttcccaatgtggttctgggtcagggctggccacaggaggacatggtctggacttgggaggagaagCTGCGATTTGGTGTCTGGAGTGGGTGTGGGCCTCGTGGGACGGGTCTGCTGGTCATCTGGGTGGTTCAGGAGAGCGGCCAG----CACCTCCGGCTCATGCAGGCCTCACCCCACAGCACTTCAGGG------------CCCTGGGCTGGATGCACGTGT-----GCTCCACAGCCAAGGGCCCGGCTGTCCTGCAGGGGCCTGGCTAAGACGGGAGGT--GGGGAGAGAG s danRer1.chrNA 180071518 329 - 390413307 TAGGTGGAGGGCCTGGTATCACCCTGTGGGCTATACTGCAAGTCCAGGAAGAGAGGTTGACCCCTGGGTAGCTTGCTGGGGTCAAGGGC-CCCTAGGTGGAGGGCCAGGG--GCAC-------------------------------------------------------------------------------CCTGGGGACTATAA--TGCAA------GTCCAGGGAGGGAGGTGGACCCCTGGG--TAGCTTGCTGGT-GTCAGGG-GCTCTAGGTGTAAGGCCAGGGGACAC--------CCTGTGGGCTAAATTGCA----AGTCCAGGAAGAGAGTTTGACCCCTGGGTAGCTTGCTGGGGTCAGGGGCCCCGGGGTGGAGGGCCAAGTTGCCCCCTAG------GGCCTATACTGCAAGTCCAGGGAGAGAG a score=49828.0 s hg17.chr7_random 633757 537 + 778964 CAACACGGGGACATACCAGGTGTTCTCAAGGGCCCCAGCCTGACTCCACTGTCCCTCACTTCATGTCTCttatgggctggactgtgcccccagatattcatatgtccaaattctaacccccaggacccctgaa-tgtgacctgatttggagacagggcccttgcagatgagattgaggggagatgagctcacaggaggccccgatctggtgggactgctgtcctcatggaaagggggaacctggacccagggagaggctcacatagagggaagaagatgggaagagacacagggagacgacggccatccagaagccagtgagagggaccaggacggattctccttcaacccccagaaggagcctgtcctgcaacaccagggccccagacctgtggccctcaggacgtgagaaaatcaatccctCAGAGGCCCCCAGAACATCCGCCTTCCCATCCCCACGGTGCTGGGCTCAGCACTGCACAGGCCACACGCCCTGCCCGTGGCTGCTTCACCTGCCCCCAGGACATTGCTGAGCACC s panTro1.chr6_random 740326 538 - 67355074 CAAGACGGGGACATACCAGGTGTTTTCAAGGGCCCCAGCCTGACTCCATTGTCCCTCACTTCATGTCTCtcatgggctggactgtgcccccagatattcatatgtccaaattctaacccctaggacccctgaaatgtgacctcatttggagacagggcccttgcagatgagattgaggggagatgagctcacaggaggccccgatctggtgggactgctgtcctcatggaaagggggaacctggacccaaggagaggctcacatagagggaagaagatgggaagagacacagggagacgacggccatccagaagccagtgagagggatcaggacggatcctccttcaacccccagaaggagcctgtcctgcaacaccagggccccagacctgtggccctcaggacgtgagaaaatcaatccctCAGAGGCCCCCAGAACATCCACCTTCCCATCCCCACGGTGCTGGGCTCAGCACTGCACAGGCCACACGCCCTGCCCGTGGCTGCTTCACCTGCCCCCAGGACATTGCTGAGCACC a score=38691.0 s hg17.chr7_random 634294 336 + 778964 CTGTTTTCTGTCGGA------GTCCCAACGGCACAGAGGCAAGAGCTTTCAGGGCTTGGCACCCGAGCCCTCAGACGGCGGCAGGAGGCATCGCAAGCCTCCCTGGAGGTCTTTTAGGAGAGCGGCGCCAGCGGCCCGCGGGGGCTTCAGAGGGCGAGCAGAGCTGGGCC--CCCCGGTGG----------GTGCCCCTGG----GAGAAGC-------GCATGTTCCA-GCTGCCTCCCA----------CCCTGGGCGCG---CGTCTCAGGGGCTACGTGAGACCCTCCGCCACGGCCACCGTGGAGGAGCCTGCATGC--GAGGCTGGGTGGGGGAACCACAGCACCGTTTCGCGGCTG------ttttgtttttgtttttgt s panTro1.chr6_random 740864 342 - 67355074 CTGTTTTCTGTCGGA------GTCCCAACGGCACAGAGGCAAGAGCTTTCAGGGCTTGGCGCCCGAGCCCTCAGACGGCGGCAGGAGGCATCGCAAGCCTCCCTGGAGGTCTTTTAGGAGAGCGGCGCCAGCGGCCCGTGTGGGCTTCAGAGGGCGAGCAGAGCTGGGCC--CCCCGGTGG----------GTGCCCCTGG----GAGAAGT-------GCATGTTCCA-GCTGCCTCCCA----------CCCCGGGCGTG---CGTCTCAGGGGCTACGTGAGACCCTCCGCCACGGCCACCGTGGAGGAGCCTGCATGC--GAGGCTGGGTGGGGGAACCACAGCACCGTTTCGCGGCTGttttgtttttgtttttgtttttgt s canFam1.chrUn 1722664 339 + 91062872 CTGTTTCCTGATGGACACCCCGGCCCCGTGATGCAGAGAGAAAGGTTTTCGGGGCTTGGGCTCCAAGGCCTCTGAGGGCAGCAGGAAGCATTTCAAGCCTC-------GTGT----GGTGCACGACGTCAGCACCGCGT---GGCCTCATGAGAAGGATGGACCCGGCTCTGCCCTGGCAGAAGTGCTGCCATGCCACTTGTGTCGAGGAGCTGGTGGGGCAGGGGCCACGGTGCCCCCCAGTCCAGCCTGGCCTGAGCACGGCCCCTCCCCGTGGCTGGACG-GACCCTC--CCGCGTCC----TTGAGCAGCGTGCAGGCCTGAGGCAAGCAGAGCGAAGCACAGT---------------------TGTTGTTCTTGT------ a score=30615.0 s hg17.chr7_random 634630 328 + 778964 tttttgttttgtgggttttttattttgtttttgtttttgttttttcgagactgactctcactctgtcgcccgggctggagtgcagtggcgtgatctcggctcactgcaacctccgcctcccgggttcaagccattctcctgtctcagcctcccgagtagctgggattacaggcacgcgccatcacacccggctaatttttgtatttttagtagagacggggtttcaccacgttggccaggctggtctcaaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggatgacaggtgtgagccaccacacccggcc s panTro1.chr6_random 741206 328 - 67355074 ttttcgttttgtgggttttttattttgtttttgtttttgttttttcgagactgagtctcactctgtcgcccgggctggagtgcagtggcgtgatctcggctcactgcaacctccgcctcccgggttcaagccattctcctgtctcagcctcccgagtagctgggattacaggcgcgcgccatcacacccggctaatttttgtatttttagtagagacggggtttcaccacgttggccaggctggtctcgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgagccaccgcacccggcc a score=3066.0 s hg17.chr7_random 634958 8 + 778964 TTGCTGCT s panTro1.chr6_random 741534 8 - 67355074 TTGCTGCT s mm5.chr5 136367588 8 + 149219885 TTGTTGCC s rn3.chr12 30433876 8 - 46649226 CTGCTACT a score=89285.0 s hg17.chr7_random 634966 463 + 778964 GTTTTTATCACATTAAAA------CACAAAATTAATTCAGCCATTTCTCCTGACCCCAAAATGTCTGAGGAGTAGAGCAAGCAGAGAGGTGAATGATTCATATCTTTGGAATCCCTACT-GCAAACGCGTGCAGAAATAAACTGGGTTTTCCTCCTGTAACAGGGCCGTTTCACCTGGGGGGCTGCACGTCTGCAGAGTGAGGCTCCGCAGGCAGATGCTACAGG----------------------GAAAGGCAGCCC-------TGGGGAC---------------CAGGAAATGAT------GCC--GTCCTCTTG-------GACACTGGG---------GAGAG-------------------TGA--CCTGGGGGAGGTGGACA--CAGCGCGGCTGGGGC----------------GAGGCCTGGGCTC--CAGGTC---CCCATGCAGGGCAGTC------CGAGGGTGTCCTCATCCACC------------------TCCCTTTGTACCGTGAGTTTGCTGAGCCAGATGGTGACAC-AGGGCTCCTGA-------GGGCTCAGC-----CTGGA-GTCTGTGAGTCTAAATCAGAACTTGCCTGGTGGT s panTro1.chr6_random 741542 465 - 67355074 GTTTTTATCACATTAAAA------CACAAAATTAATTCAGCCATTTCTCCTGACCCCAAAATGTCTGAGGAGTAGAGCAAGCAGAGAGGTGAATGATTCATATCTTTGGAATCCCTACT-GCAAACGCGTGCAGAAATAAACTGGGTTTTCCTCCTGAAACAGGGCCGTTTCACCTGGGGGGCTGCACATCTGCAGAGTGAGGCTCCGCAGGCAGATGCTACAGG----------------------GAAAGGCAGCCC-------TGGGGAC---------------CAGGAAATGAT------GCC--GTCCTCTTG-------GACACTGGGG-------AGAGAG-------------------TGA--CCTGGGGGAGGTGGACA--CAGCGCGGCTGGGGC----------------GAGGCCTGGGCTC--CAGGTC---CCCATGCAGGGCAGTC------CGAGGGTGTCCTCATCCACC------------------TCCCTTTGTACCGTGAGTTTGCTGAGCCAGATGGTGACAC-AGGGCTCCTGA-------GGGCTCAGC-----CTGGA-GTCTGTGAGTCTAAATCAGAACTTGCCTGGTGGT s mm5.chr5 136367596 457 + 149219885 GTGTTTGTCCCACTAAAA------CACAAAATTAATTCAGCTTTTTCTCCTGACCCCAAAATGTCTGAGGAAAGGAACACGAGGCGAGGTGAAATATTCATAGCTTTGGAGTCTATTTTCCCAAAGGCGTGCATATATAAATTGGCTGTTCCTCATGAAATGGTTCTGTATATCCT-GAGGGCCATGAGTCTGGAGACAAATGCTGTGTGGGTACACACCACA-----------------------------GTCCCCC-------TTGAGGC---------------TACACAATGACAG--AAACT--GACCTGGGG----ACAGACACTAGAG--GTTGCAGAAAA-------------------TGAAGCCCGAGGGAGG------------GATGCTGAGGCCAAGTAAAGAAA----GAGGTCTGAACCCTTCAGGTC--TCCCAGGGAGGGCA------------------------------------------------CCATGTGGCCAGCAAGTC--CTCACTCAGACTTTCACAT-AAAATGACTGACAGACAGGGGCTCAGT-----GTCAA-GTCTAGGGGTGGAGGTCAGAGGTT-TCTGGTGGT s rn3.chr12 30433884 463 - 46649226 GTGTTTGTCCCACTAAAA------CACAAAATTAATTCAGCTTTTTCTCCTGACCCCAAAATGTCTGAGGAACAGAACAAGAGGCAAGATGAAATATTCATAGCTTTGGAGTTTATTCTCCCAAATGCGTGCAAATATAACTTGGTTGTTTGTCCTAAGATGTATCTATATTACCT-GAGGGCCGTGAGTCTGGGGACAAAGGCTGTGTGGGCACACACCACAGGCCCCCTTGAGGCTACACAGCCAAAGAGACTGACC-------CGGGGACAGATGCTAGAGGTTGCAGAAAATGAA------GCC----------------------CTGGG---------GAGGG-------------------AAG--CTGAGGCCAAGTAGACA---------------AT----------------GAGGCCTGAACCCTTCAGGTT--TCCCAGGGCCAGCTACCAAGTGGCTAGCAAGTCCTCATC-----------------------CAGTCTTTCACATAAAATGACTGA--CAGAC------------------AA-------GGACTCAGTCATCACTCAA-GTCTAGGAGTGGAGGTCAGAGGTT-TCTGGTGGT s canFam1.chrUn 1723429 551 + 91062872 attttttaaaaattaaaaaaaaCCCACAAAATTATTTCAGCCA---CTTCTGACCTTGAAACGTCT-AGAAGCAGAGCTCATATAGCAATGAATTATTCATATCTTTGGACCCCATTCT-CCAAACATGCGTGAAAGTAAATTGGGTTGTCCTCCTAAAGTGGGGCTGTTTCACCTGAGGGGCTTTC--TTGGCAGACCC---CACCATGGGTCCCCACTGCAGG----------------------TCACAACACCCCATATGGGCCGGGAC---------------CAGTAGGTGACTGTCGGGTCAGGACCCGTAGCAGGCCCACCAATGGGGAAGCCCATGGGAAACTCCCTGGTGCTGCATCCTGG--TCAGAGGCAGGTGGGCAGGCACCCCAGATGTGGTTCAGGAAGACAAGCTCGAATCCAGCACCC--TAGGGTGTTGGCTTGCTCTGCGGCC------CCCTTGCCCCCTCACCTGCCCACCCTGCACCCACTTTTCTCATCCACACAGGAAGTGTGCTGACCCAGACAACGGTGCAAGGGCTCCTGA-------GGGCTTGGC-----ATCAACATTCTCTGCTCTAAACCAGAAAATTCCTGGTGAT a score=5480.0 s hg17.chr7_random 635429 39 + 778964 CGTCCTTACGTTCATCTGAGGTGAAGGTCTGGGTCCTTC s panTro1.chr6_random 742007 39 - 67355074 CGTCCTTACGTTCATCTGAGGTGAAGGTCTGGGTCCCTC s canFam1.chrUn 1723980 38 + 91062872 CTTCCTTAAATTTACCAGC-ACCAGGGCCTGGATCTTTC a score=3838.0 s hg17.chr7_random 635468 40 + 778964 GTGCTTGAATCTCACCCAAGGCAGGAAGTCTTTGCTGCCC s panTro1.chr6_random 742046 40 - 67355074 GTGCTTGAATCTCACCCAAGGCAGGAAGTCTTTGCTGCCC a score=555.0 s hg17.chr7_random 636005 9 + 778964 GGGGCTCTC s canFam1.chrUn 89305433 9 - 91062872 GGGGCGCCC a score=25498.0 s hg17.chr7_random 636014 70 + 778964 ---------CAGGCGCTGCAGCAGCGGGGTGCGGGGAGCGGG-GAAGGGGGTGTGTGTGAGCCGGCGGAGCCTGGGGAGG- s mm5.chr5 12821623 70 - 149219885 ---------CGGACAATGCAGTAACGGGGTGCGGGAAGCGGG-AAAGGGGGTGTGTGTAAACTGACCGTGCTCTGGGAGG- s rn3.chr12 16184390 71 + 46649226 ---------CGGACAATGCAGTAACGGGGTGCGGACAGCGGGAAAAGGGGGTGTGTGTAAACTGACCGTGCCCTGGGAGG- s canFam1.chrUn 89305442 80 - 91062872 CGGACGCGGCGGACAATGCAGTATCGGGGTGCGGGGAGCGCG-GAAGGGGGTGTGTGTGACCTGGCGGAGCCCGGGAGGGG a score=252597.0 s hg17.chr7_random 636084 525 + 778964 AGAGAAGGGCGGCGGATAAATAGGTAGGGGCGGCTGCTGCGGAAGCCCCTGGCCG--------GGCAGGGTGGGCAGCGCCAAGCTGCAGCC------CTCGGTTCCCAGTCCCCAAGCCCGGCGGGGCTCAGGGCCGGCGCAGTc-ccgcccgccc-gggccggcggACAGGGGGCNGAGCGAGGCGAGCTG-----GGGCTGGGCCAGGCGTCCGCACCCTCCCACCGCGGCGNCcccgccccccc--------atccccatccccatccccatccccGGGAGCTTTGCTGTGATGAATGACTTTCCACAGCCCCCGTCGTGGGAACTTAGTGCTTCAGGC----------------TCCCCAGCGACCCCCGACTCTCCTTAAAAATCGGGGAGGGGAGTGGGGGAGGCCAGA-GGTGAGGGTGGTCTCCGCAGGGCACGGAGAGCTGCGCGAGGTGGAAGTTTAA-CCCTCGCTTTCCCTGGAGGCTTCTTCTCCCGGCCGCCGGCTGGAT-TTGGGCGTCTTAGTCGGCGCTAGGGCCGCGGCTGGGCCGGAGCCCGGGGTGGGGCGA s panTro1.chr6_random 66702512 495 + 67355074 AGAGAAGGGCGGCGGATAAACAGGTAGGGGCGGCTGCTGCGGAAGCCCCTGGCCG--------GGCAGGGTGGGCAGCGCCAAGCTGCAGCC------CTCGGTTCCCAGTCCCCAAGCCCGGCGGGGCTC-------------------------C-GGGCCTGCTTACAGGTGGCTGAGCGAGGCGAGCTG-----GGGCTGGGCCAGGCGTCCGCACCCTCCCACCGCGGCGTCCCCGCCCCGCC--------ATCCCCATCCCCATCCCC------GGGAGCTTTGCTGTGATGAATGACTTTCCACAGCCCCCGTCGTGGGAACTTAGTGCTTCAGGC----------------TCCCCAGCGACCCCCGACTCTCCTTAAAAATCGGGGAGGGGAGTGGGGGAGGCCAGA-GGTGAGGGTGGTCTCCGCAGGGCACGGAGAGCTGCGCGAGGTGGAAGTTTAA-CCCTCGCTTTCCCTGGAGGCTTCTTCTCCCGGCCGCCGGCTGGAT-TTGGGCGTCTTAGTCGGCGCTAGGGCCGCGGCTGGGCCGGAGCCCGGGGTGGGGCGA s mm5.chr5 12821693 501 - 149219885 GGACTAGGGCGGGCAGTAAGCAGGTAGAGGAGGGTGCGGCCGTAGCCTGGGACTG--------GGAAGGGTGGGCAGCGCCCAGCCGCAGTC------CCCAGTTCTCGGTCCCCAAACCCAGTCCGACGCAGGGCTGGAGCAGTCTCCGCCCGCCC-AGGCCTGCTTACAGGTGGCTGAACGAGGC-AGCTG-----GGGCCGGGCCAGGCGCCCGCGCCCTCCCACCGCCA----CCCTTCCCCCC--------ACCCCCAT-----TCCCC------GGGAGCTTTGCCGTGATGAATGACTTTCCACAGCCCCTGTCGTGGGAACTTCGTGGTTGAGTC-----------------CTCCAGCGACCCTGACTCCCTTTTAAAAACCGGGACGGAGAGTGGGGGAGGCTGAACGGTGGGGGTGGTCTGGGCAGGGACCGGAGAG--GCGCGAGGTGGATATTTAACCCCTTGCGTTCCCTGCAG----CCTCTCTAAGC--CCCGATGGAT-TTGGGCGTCCTAGTCGGCGCTAGGGCCGTGACTGGGCCTGAGCC--GGGTGGGGCGA s rn3.chr12 16184461 499 + 46649226 GGACTAGGGCGGGCAGTA---AGGTAGACGAGGGTGCGGCTGAAGCCGGGGACTG--------GGCAGGGTGGGCAGCGCCCAGCCGCAGCC------CCCAGTTCCCGGTCCCCAAACCCAGTCGGACGCAGGACTGGAGCAGTCTCCGCCCGCCCAGGGCCTGCTTACAGGTGGCTGAAGGAGGC-AGCTG-----GGGCCGGGCCAGGCACCCGCGCCCTCCCACCGCCA---CCCCACCCCCCT--------ACCCCCAT-----TCCCC------GGGAGCTTTGCCGTGATGAATGACTTTCCACAGCCCCTGTCGTGGGAACTTCGTGGTTGAGTC-----------------CTCCAGCGACCCTGACTCCCTTTAAAAAACCGGGAGGGAGAGTGGGGGAGGTTGAACGGTGGGGGTGGTCTGGGCAGGGACCGGAGAG--GCGCGAGGTGGATATTTAACCCTTTGCGTTCCCTACAG----CCTCTC-AAGC--CCCGATGGAT-TTGGGCGTCCTAGTCGGCTCTAGGGCCGTGACTGGGCCGGAGAC--GGGTGGGGCGA s canFam1.chrUn 89305522 501 - 91062872 ----ACGGGCGAGCGGCGGGTCCACAggggcggccgcggcggaagccccccggcgggcggggaggcagggtgggcggcgcggggccgcagccccctcgcccgggtcgcggcccctgagcctggccgggccgctgggccccgcagtc-ccgcccgcccggggccTGCTTACAGGTGGCTGAGCTAGGCGAgccggggccgggccgggccgggcgcgcgcgtcctcccaccgccggggcccccTCCCCCCAGGGTAGGATCCCGAA-----CCCCC------GGGAGCCCGGCCGTGATGAATGACTTTCTGCAGCCCCCGCCGTGGGAACTTAGTG---GAGACCCCTCCCCCGCACACCCCCACGGCGACCCCCGACTCCCGGGCACAGTCTGGAGGG-------------------AGTGGGGGTGGTCTGGGCAGGGACTGG-GAGCTGCGGGAGGTGGAGATTTAA-C---------------------CCTCCC---GCCGCCGGCTGGATGTGGGGCGCCCTGGGCGGCGCTAgggccgcggccgggcc--------gggtggggcgc a score=5896.0 s hg17.chr7_random 636609 71 + 778964 gtgtgtgagtgagatgtgtgtgcgcgtgtgtgtgtctgcgcgcgcgtgcgtgtgtttgtgAGA-CGGAGAGA s panTro1.chr6_random 66703007 71 + 67355074 gtgtgtgagtgagatgtgtgtgcgcgtgtgtgtgtctgcgcgcgcgtgcgtgtgtttgtgAGA-CGGAGAGA s rn3.chr12 16184960 43 + 46649226 ---------------CCGGGAGAGCGTGCTTGTG-------------GGGTGGGGTGGGGGGAGCGAAGAC- s canFam1.chrUn 89306023 48 - 91062872 gcgTGTGAACG-GATGAGTGCGCGCGCGCGTGTTTTTGCGC-----------------------CGGAGACC a score=148338.0 s hg17.chr7_random 636680 476 + 778964 -CCTCTCC---ACGGGTTCGGCCCGGGATTCCGGGGCGTGAAATTT-AAGCCCT-GCCTGGATTAAAGTGTTAGGGCTGCCGTGACTC---TCGCCGACCCGTGACGCATTTTTACTT-GATC--TTTCTAGATGTTGATCTCACTATTAAATCAGAAACT-TTCGGCCCCCTCGCTGCCCCCTAGACCTTCTGTAACTGA-CACCCCGGGTGGAGGGGCCGGAGTGCGGG-GGCTTTTGTCTGAAAATATAAA---GGGGGGGGGGCTTTGATTTTGCAAAGGGCGGA-ACAT-GGATGCGGGTGGAGAATTT---GGGGTCTCTTCCAGCC----------CCACCCCCGGCTTCTGGTTCCAgggcc-ggggcgagggctccgcg---------------ggggctggggcggggactgcggccggcgctcgcggggtct-cctcgggcccggggcggcggcgctcctggcggccgggggcgcgtgccggcggggtcggg-------gccgcgggcgcTGACCGTGTGGC s panTro1.chr6_random 66703078 479 + 67355074 -CCTCTCC---ACGGGTTCGGCCCGGGATTCCGGGGCGTGAAATTT-AAGCCCT-GCCTGGATTAAAGTGTTAGGGCTGCCGTGACTC---TCGCCGACCCGTGACGCATTTTAACTT-GATC--TTTCTAGATGTTGATCTCACTATTAAATCAGAAACT-TTGGGCCCCCTGGCTGCCCCCCAGACTTTCTGTAACTGA-CACCCTGGGTGGAGGGCCCGGAGTGCGGG-AGCTTTTGTCTGAAAATATAAAGGGGGGGGGGGGGCTTTGATTTTGCAAAGGGCGGA-ACAT-GGATGGGGGTGGAGAATTT---GGGGTCTCTTCCAGCC----------CCACCCCCGGCTTctggttccagggcc-ggggcgagggctccgcg---------------ggggctggggtggggactgcggctggcgctCGCGGGGTCT-CCTcgggcccggggcggcggcgctcctggcggccgggggcgcgtgccggcagggtcggg-------gccgcgggcgcTGACCGTGTGGC s mm5.chr5 12822667 404 - 149219885 -CCTCTCCCCTGCGGGCTCAGCTCAGGATTCCCGGA-GTGAAATTG-AACCCTTCGGCTAGATTAAAGTGTTGAGGCTGCTGTGACTCCAGTCGTGGATGCGTGACGCATTTCGACCC-TCTCTGTTTCTACATGTGGATTTAGCTATTAAACCAGAAACTCTTCGGGCCCCTGGCTGCCCCCA---------------GA-CACCCTGGG----GAGGCCAGAGCGCGGGTGATTTTTGTCTGAACATGTCAAGGCATTGTTGGGG---TATTTTTATCAAGGTCAGACAGATAGGAACAGTGTGGAGGATTT-AGGGGGTCCCATCTAGCC----------CCA-GCCGATCCTCTGGCTCTAGGGCC--TAACGAGGGTCC---------------------GGCCGGGCTG-----TGTGGC------------------CCCTGGGGCTGGG------------CTGGAACCCTTGGGCGCGT-------------------------------CCTGACGGTGTGG- s rn3.chr12 16185003 404 + 46649226 -CCTCACCTCTGCGGGCTCGGTTCAGGATTCCCAGA-GTGAAATTG-AACCCTCAGGCTAGGTTAAAGTGTTGAGGCTGCTGTGACTCCAGTCGTGGATGCGTGACGCATTTCGACCC-TCTG--TTTCTACATGTGGATTTAGCTATTAAACCAGAAACTCCTCCGACCCCTGGCTGCCCCCA---------------GA-TACCCTGGG---GAGGGCCAGAGCACGGCTGCTTTTTGCCTGAACATGTTAAGGCGGTGTCGGGG---TGTTTTTACCAAGGTCAGAGAGATAGGAATAGTGTGGAGGACCTGGGGGGGTCCCACCTAGCC----------CCA-CCCGATCCTCTGGCTCTAGAGCC--TGGCGAGGGTCG---------------------GGCCGGGCTG-----CGTGGC------------------CCCTGGGGCCGGG------------CTGGAACCCCTGGGCGCGT-------------------------------CCTGACCGTGTGG- s canFam1.chrUn 89306071 505 - 91062872 CCCCCGACCCGGCAGGTTCGGCCCGGGGTTCCGGGGTGTGAAAATGCAAGCCCCTGGCCCCATGAGAGTGTGAAGGCTGCCGTGGCTTGGGGCGCCGATCCGTGACGCATTTCAACTTGGATC--TCTCTGGATGTCGATTTCACTATTAAATCAGAAACTCCTCGGGACCCTCGGCGCCCCTA-GACCTCCTGTGACTGAcccccccgggcggaggggccgggggccggg---cTTTTGTGTGGAAATGTAAAGGTGGGAGGAGGGCT-TGCTTTCTGGAAAGGCGG--CCCT-GGATGCGGGCCGAGAATTG--GGGGGTCGCACCCGGTCCGCACCCTGTCCGCCCCCGGCGTCTGACTCCAGGGCCCCCGGCAGGGGTCGGGCGCCCGGAGAGCTCGgagggcgtgggctgggggcgccggc--gctgtcgggggcgctgtcgggggcacagggcg---------cggggg----ggggcgcgcgcgggggggtgcgggCCGGCCCGGCGCGGACGCTGACCCTGTGG- a score=6000.0 s hg17.chr7_random 637156 7 + 778964 CTCTGCT s panTro1.chr6_random 66703557 7 + 67355074 CTCTGCT s mm5.chr5 12823071 6 - 149219885 -TCTGCT s rn3.chr12 16185407 6 + 46649226 -TCTGCT s canFam1.chrUn 89306576 7 - 91062872 CTCTGCT s fr1.chrUn 103197382 7 + 349519338 CCCCCCC a score=3279.0 s hg17.chr7_random 637163 2 + 778964 TG s panTro1.chr6_random 66703564 2 + 67355074 TG s mm5.chr5 12823077 2 - 149219885 TG s rn3.chr12 16185413 2 + 46649226 TG s canFam1.chrUn 89306583 2 - 91062872 TG s galGal2.chr14 16389026 2 - 20603938 TG s fr1.chrUn 103197389 2 + 349519338 CG a score=194441.0 s hg17.chr7_random 637165 105 + 778964 CAGGAAGCCGAGATCCCCCGCGAGGTGATCGAGAGGCTGGCCCGCAGTCAGATCCACAGCATCCGGGACCTCCAGCGACTCCTGGAGATAGACTCCGTAGGTAAA s panTro1.chr6_random 66703566 105 + 67355074 CAGGAAGCCGAGATCCCCCGCGAGGTGATCGAGAGGCTGGCCCGCAGTCAGATCCACAGCATCCGGGACCTCCAGCGACTCCTGGAGATAGACTCCGTAGGTAAA s mm5.chr5 12823079 105 - 149219885 CAGGAAGCCGAGATACCCCGGGAGTTGATCGAGCGGCTGGCTCGAAGTCAGATCCACAGCATCCGGGACCTCCAGCGACTCTTGGAGATAGACTCCGTAGGTAAA s rn3.chr12 16185415 105 + 46649226 CAGGAAGCCGAGATACCCCGGGAGTTGATCGAGCGACTGGCTCGAAGTCAGATCCACAGCATCCGGGACCTCCAGCGACTCTTGGAGATAGACTCCGTAGGTAAA s canFam1.chrUn 89306585 105 - 91062872 CAGGAAGCCGAGATCCCCCGCGAGGTGATTGAGAGGCTGGCACACAGTCAGATCCACAGCATCCGGGACCTCCAGCGACTCCTGGAGATAGACTCCGTAGGTAAA s galGal2.chr14 16389028 105 - 20603938 AAGGAGGCCGAGATCCGGCAGGAGATGATCGAGCGGCTGGCGCACAGCGAGATCCACAGCATCCGCGACTTGCAGCGCCTCCTGGAGATTGACTCCGTAGGTAAA s fr1.chrUn 103197391 105 + 349519338 CAGGACTCCCCTCTGCCCCGTGAGCTGTTGGAGCGCCTCTCTCGGAGCGAGATTCGCAGCATCAGCGACCTCCAGCGGCTGCTAGAGATAGACTCCGTAGGTAAA s danRer1.chr22 5709580 105 - 32001892 CAGGAAGCACCAATTCCCCGAGAGCTGATTGAGAGACTCTCTAACAGTGAGATCCACAGCATCAGCGACCTCCAGAGGATCCTGGAAATGGACTTCCTAGGTAAA a score=7398.0 s hg17.chr7_random 637270 10 + 778964 T------CGCGCC----CCT s panTro1.chr6_random 66703671 10 + 67355074 T------CGCGCC----CCT s mm5.chr5 12823184 10 - 149219885 T------CGCGCC----CCT s rn3.chr12 16185520 14 + 46649226 T------CGCGCCCCTGCCT s canFam1.chrUn 89306690 10 - 91062872 T------CGCGCC----CCT s galGal2.chr14 16389133 16 - 20603938 TTAGTCCCGTCCT----CCT s fr1.chrUn 103197496 10 + 349519338 G------CGCCTC----TCT a score=3574.0 s hg17.chr7_random 637280 6 + 778964 TCCCTc s panTro1.chr6_random 66703681 6 + 67355074 TCCCTc s mm5.chr5 12823194 6 - 149219885 GCCCTG s rn3.chr12 16185534 6 + 46649226 GCCCTG s canFam1.chrUn 89306700 6 - 91062872 TCCCTc s galGal2.chr14 16389149 6 - 20603938 TCCTAC a score=77410.0 s hg17.chr7_random 637286 134 + 778964 cgcgcgc---ggggagggcgcgggcggg----cgg-----------------------cctgtgcgccccgagctggggccgggcggggcgccgcgcAGGAGCGCACCGAAAGGTCAGAATCCAATCCCCAGCCATAAGCGCCCGGGCGGATGAGTCAGGAGTT s panTro1.chr6_random 66703687 138 + 67355074 cgcgcgc---ggggagggcgcgggcgggcggccgg-----------------------cctgtgcgccccgagctggggccgggcggggcgccgcgcAGGAGCGCACCGAAAGGTCAGAATCCAATCCCCAGCCATAAGCGCCCGGGCGGATGAGTCAGGAGTT s mm5.chr5 12823200 156 - 149219885 CCCTGGCTGAGAGGAGGGCGCGGGCGGCGGGGCGGGCCGGCTGCGCGAGGAACCGTACCCTGCGCGCTCC--------GCCGGGCCGGGCGCTGCGCAGGAGCGCACCGAAAGGTCAGACTCCACTCGCCGGCCATAAACGCCCAGGCGTATGAGTCAGGCGTT s rn3.chr12 16185540 154 + 46649226 CCCTGGCTGCGAGGAGGGCGCGGGCGGCGGGGCGGGCAGGCTGCGCGAG---------GAACCGTACCCTGCGCTCG-GCCGGGCCGGGCGCTGCGCAGGAGCGCACCGAAAGGTCAGACTCCACTCGCCGGCCATAAACGCCCAGGCGTATGAGTCAGGCGTT s canFam1.chrUn 89306706 140 - 91062872 ggcgcgc-ggggcgggggtgcggggggtgcgcccc-----------------------gcgccgcctcccgcgctcgggccgggccaggcgccgcgcAGGAGCGCACCGAAAGGTCAGAATCCAATCCCGGGCCATAAAAGCCCAGGCGGATGAGTCAGGAGTT a score=60130.0 s hg17.chr7_random 637420 703 + 778964 TCTCTTCCAGTCTCCACTT--TCTCTCCCAGCGGCGGCCGAGGGCTGC-TCGCTCGCCCCGGGATTGTTTTCGCCTTTAAGGAAAACGCCGC--GTGTGTCACACAAAGTTCAGCCGCG--GCCT-------------CC--GCCAGGTGTGCGGGCCCCGCGCC--TGCCCTCGGGCCGGGGGAGCGGCAGGATCCGGCCCAGACCCTGGGCGCAGAGCCCTGGCCCG--TGCGCCGGGCGGGCAGCCCGCGGAGCGAGGCCCCAAGGGCAGGCGCGGCTCCCGGTCCGAcgggcgggcgggcggaggcggcccccgggtcagggcccggcccccTCTGTAATCCCTGCGAGCTGGTGCCGCGTTCTT---GCCGCAGGGCTGGGCCTC---TGTGGCTGCA-GAAGCCGGTGTCTTTCTGTTTTCACGACCCAATGAAAAGC----CTTGGACGCATCTGCTGC-------CTGGGGGCTATTTTTGCGGCTCAC--CCTCGGGCCC-TGGGGCCGGGCCACTAGAGAACACAGCTTGTTTGCAAGCACAGAGTTTTGCTG-------------------CGGGTT-GGCAAGGGTTAAAGGGGCCTCTCACCCCGGGGGACCCCGGTGGAC-----CACGGGTGGGTGGGAGGGGCGAGGGTGTAGGGTGGCCGCCCGCCCGCTCAGGGCTAGAGAGCCCCTTCCTAGAAGGCGAGG-TCTCTCTTCCAGGCGTGCGTGGCGCTCTTTTCAAAATGAGCACTCGGCCTG-------------------GGAA s mm5.chr5 12823356 609 - 149219885 TCTCTTGTAGTTGCCACTT--TCTCTCCCAGCGGCAGCGGAGGGTTGCTTCGCTCACCCAGGGGTTGT-------TTTAAGTGAAACGCAGCGGGTGTGTCACTGAAAGTTCAGTTTTA--GAGTGTGCCGAAAA---CT--GCCAGGTATGCGGG-TCAACAGC--TGCTTCTGGCCCGGGAGCGCG---GGAGCCGGCCCGGA----GGGAGCGTGGCTGTGGCTAGTCTTCTCCTGGC---------------CAGGGCCCCCAGAGT---------------------------GCTTGAGGAGCTGGTC----GGTCCGGG-------CCTTTTGTAAACTCCACTCCCTGGTGCCTTGATC-----GCC-TGGGGCTGGGTCCCATAGGTGGGCGCAGGAGGCCGATGTTTTTTTCTCCACACCATCCTGTAAAAA----------GGCGCGCCTAGTACACGGACGCTTGGGGCTATTTTGGGGGCTTCCCGCCTCGGGCC---AGAGCCAAGCCACTGTAGAAAACA----ATTTGTAAATGTAGGGTTGTATTAG----------------ACTCGGAT-GACAAGGGCTAAA------------------------------------------ATAAATGGGCGCGATGGGGATG-GGAGAGGCAGCC--TCTGTGCGGG-------------------GAGGACGTGG---TCTCCTCCTGTCTTTTGTGATAACCTTTTCAAAATGAACACTTAGCCTGTTTTTTTGTTTTTGTTTTTGACA s rn3.chr12 16185694 600 + 46649226 TCTCTTACAGTTGCCACTTTCTCTCTCCCAGCGGCAGCGGAGGGTTGCTTCGCTCGCCCGGGGGTTGTTTTTGCGTTTAAGGGAAACGCAGCGGGTGTGTCACTGAAAGTTCAGTTTTA--GACTGTGCCGAAAGACCCT--GCCAGGTGTGCGGA-CCAACGGCTGTGCCTCTGGCCCGGGAGCGCG---GGAGGCGGCCGGGACA--GAGCGTGGGGTTATGGTTGGTCTTCTCCTGGC---------------GAGGACCCCCAGAGC-------GCT--------------------TGAGGATCTGGTC----AGTCCCGG-------CCTTTTGTAAACTCCACTCCCTGGTGCCTCGATC-----GCC-CGGGGCTGGGTCCCTGTGGTGGCCGCGGGAGGTCGATGT-TTTTTCTCAACACCATCCTGTAAAAA----------GGCGCGCCTGGGACACTGGCGCTTGGGGCTATTTTGGGGGCTTCCCGCCTCAGGCC---AGAGCCAAGCCAC-GTAGAAAACA----ATTTGTAAATGTAGGGTTGGATTAG----------------ACTCGGATCGACAAGGGCTAAA----------------------ATAAGTGGGC----------ATGGACTGGGATG----------GGAGAGGCAGTCC-TCTGT--------------------GCTGGAGGACTTGG---TCTCTT---GTCTTTTGTGA---CCTTTTCAAAATGAACACTTAGCCTG-------------------GGTA s canFam1.chrUn 89306846 610 - 91062872 TCTCTTCTAGTGCCCACTT--TCTCTCCCGGTGGCGGCCGCGAGCTGC-TCGCTCGCCGGGGGATTGTTTTTGCATTTAAGGAAAATGCTGC--GCGAGTCACGGAAAGTTCAGCGGCGCTGAGGGCGCCGGCGC---CTGGGCCAGGTGTgcggg-cccggggc--------ctgccctgcggggcg---gga---------------------ggagccctggccc---tgcgccccgc---------------ggg-----caggcgc---------------------------gcgggaggagccgccc-ccgggcagggg-------cgcTTTGTCATTGCGGCGCACGGCTGTCCTGTGCCTGCGGCC-----GCCGGGCCTT---TGTGGTTGCAGGAGCCCCGTGCTTT--------CACAGGCCAATAAAAGGCGCGTCTTCCACACATCTGGTGT-------CTGGGGATTATTTTGG-GGCTCAC--CCTCAGGCCCTTGGAGTCTAGCCACTTTAGAGTTTA-----TTTGTAAGCGTTGGAGTTTGCAAGCCCCTTGGTGTCGGTTGCACAGTT-GGAGGGGACTGGT------------------GTGCAGAGGTGGCCAGGGACCCAGGCTGGTGGCAGCGCCTACTGT--GGTGTGG-------CCCAA--------AGGAATCCTTTTCCTAGAGGGCAGAGATTTCTGGCCCACAGCTTTGTGGCCTCCTGCTCCAGAGTAGTATTTGGTGTG-------------------GGAA a score=-2139.0 s hg17.chr7_random 638123 23 + 778964 CTCCAGTCGGAGCCTTAACCTGG------------ s mm5.chr5 12823965 21 - 149219885 CACTGGGATAAAATTTA--CCAG------------ s canFam1.chrUn 89307456 34 - 91062872 CCCCCGTGGAAGGGGTAG-CTAGAGAAATACATGG a score=101573.0 s hg17.chr7_random 638146 498 + 778964 ------------TTTAAAAAG--------GGGCTCTGCGATGAACTTGTTAAAAAGAGTAAC--------TAAAGGCAGCAGAATTGGAAGAAGTTA-CGTGACATGAAGATTCT-TCTCTCCCTGCAAAGGACTCTGAAAAAGGGGGGGCATGCGGGGATTAAGTGAAATCACATGGTCTAGTCATTTGGAAATTTGTACCTAATTATGGTGGTGGAGAGGCCTGAACTATTTTCGTTTCATGCCAAAACCATTTTCTAACAAGGCCG-ATGGTTTCTGTAGTTTCTTGACCCAGGAAATCCCTGGGCTGATCCTTATCGGGGGCGGAGGGTGGGGGGTGCGGTAGAGTTTCACTCCCACAGCAC-AGCTGGGCGGGGGGAT--TTTGACCGGATCCCTCAGTGGATAACTCTAGGGAAAAGGATCTGGCTCTGGTTTGTGGGGGGGAATCCCTTGCCTGAA-TCTCGCTGGTCCTGGATGGGTTTGGAAAAGTGGGGGGGGGGGGCTGCTTCCTGGAGAAGGTTTCAGGGC s mm5.chr5 12823986 454 - 149219885 ------------CTTAAAAAGAAATAAAAAGGCCC--CAGTGAGTTTGTC---AGGAGGAAC--------TAAAGG--GCTAAAGTGAAGAATTCCA-AGTGAC-----GATTTTCCCCCTCCTTGAAAACTTTTCAGAGAGGGCCGAGTGGTGAGAGAATTAAGTAAAATCACATGGTCTAGCCATTTGGAAATTTGTACCTAATTATGGTGGTGGAGAGGCCTGAACTGTTTTTGTTGCATGCCAAAAGCATTTTTTAACCAGGCGGCCCCGTTTCAGTAGTTTCTTGACCCAGGAAATCCTTGGCCTGATCCTTATCAGGAATGGCAGGC----------CTAGGGTTTCACTTGGATATCAAGAGCTGGGTCAGGGGG---TTTGATCTGATCCCTTTTTGAGTAGGCCT-GGGTGGGGGACTTGGCTTGGGTCACTTGGGGAAATACTC---CCAGAGTTTTTGCTGGTCCCCAA--------------------AGGCGGACTGCTTTCCTG---------CCCTGC s rn3.chr12 16186479 444 + 46649226 ------------TTTTAAAAA--------AGGCCC--CAGTGAGTTTGTC---AGGAGGAAC--------TAAAGGGCGCCAAAGTG---AATTCTA-AGTGAC-----GATTTC-CCCCTCCTAGCAAACTTTTCAGAAAGGG-CGAGCGGTGAGAGAATTAAGTAAAATCACATGGTCTAGCCATTTTGAAATTTGTACCTAATTATGGTGGTGGAGAGGCCTGAACTGTTTTCTTTGCATGCCAAAACCATTTTTTAACAAGGCAGCCCCATGTCAGTAGTTTCTTGGCCCAGGA------------GATCCTGATCTGGAGTGGCAGGC----------CTAGGCTTTCTCTTGGAGATCCAGAGTTGGGTCAGGGAGG--GTTCATCTGATCCCTTTTTGAGTAGGCCT-GGGTGGAGGACTTGGCTGGGGTCACT-GGGGGAATACTC---CCAGAGTTTTTGCTGGCCCCCAAAGGCTTTGGAGA--------AGGCGGACTGCTTTCCTG--------TTTAAGC s canFam1.chrUn 89307490 490 - 91062872 TATCAGCGTCTGGTTAGCCCG--------GGGCCCT-AAGTGGGCTTGTCAGAGGGAGGCCCCCGGATGGTAGAGG----TCAGTTGGAACTTTTTGCAGTAAA-----GATTTC-GCTCTCCTTGCAGGCTACCCTCAAAGGGGGGGGGGGGGGCGGAATTAAGTAAAATCACATGGTCTAGTCATTTGGAAATTTGTACCTAATTATGGTGGTGGAGAGGCCTGAACTATTTTCATTTCATGCCAAGACCATTTGCTAGCAAGGCCG-ATGGTTTCTGTAGTTTCGTGACCCAGGAAATCCTTTGGCTGATCCTTATCAGGAAGGGG--------------GTAGAGTTTCACTAGGAGATCAG-AGTTGGGCCAGGGGGGATTTTGGTCTGGTTCCTTGATGTGTAACCCTGGGGAGAAGGATTTGGCTTTGGTTAGC-TGAGGAAAACACTCGCCTACG-TTCCGCTGGGCCCTGGAGGATCTGTAAAAGT-----GGGGAGGCCGCCTCCCTGAGAAGAT-TCAGAGC a score=-697.0 s hg17.chr7_random 638644 7 + 778964 --TTTTTCT s mm5.chr5 12824440 7 - 149219885 --TTAGCCT s canFam1.chrUn 89308034 7 - 91062872 tatttat-- a score=-727.0 s hg17.chr7_random 638644 41 + 778964 TTTTTCTGGGGGGGGGTGCTACCAAAAGGGGAGGCTTGTGG------- s canFam1.chrUn 89308034 39 - 91062872 tatttatttaGTGGCTTGC---------AGGAGCCTGGCCGGTGCTGC a score=86.0 s hg17.chr7_random 638651 34 + 778964 GGGGGGGGGTGCTACCAAAAGGGGAGGCTTGTGG--- s panTro1.chr6_random 66704459 33 + 67355074 GGGGGGGGCTGCTAGCAGA-GGGGAGACTGATGG--- s canFam1.chrUn 89308041 32 - 91062872 ----ttaGTGGCTTGCAGG-AGCCTGGCCGGTGCTGC a score=61688.0 s hg17.chr7_random 638685 112 + 778964 AGAGCTGGGCCTCCTCGTGGGACTGG-CTTTGGAAGCTGCAGGGAAATGGGCCATTCACTTTCTGCTGGGACTATTCTTATTCTGGTCTTGGC-GCCCCGCCTCCTCCACCCCC s panTro1.chr6_random 66704492 110 + 67355074 AGAGCTGGGCCTCCTCGTGG-ACTG--CTTTTGAAGCTGCAGGGAAATGGGCCATTCACTTTCTGCTGGGACTATTCTTATTCTGGTCTTGGC-GCCCCGCCTCCTCCACCCCC s mm5.chr5 12824447 104 - 149219885 AGGGCTGGGCCTCCT------GCTG---TCTGTATGTTG-GGGGAAATGGGCCATTCACTTGCAGCGGGGACCATTCTTATGCTGTTCCCTGCAGCCACGCCTCCCCCACCCCC s rn3.chr12 16186924 103 + 46649226 AGGGCTGGGCCTCCT------GCTG---TCTGGATGTTG-GGGGAAATGGGCCATTCACTTGCTGC-AGGACCATTCTTATGCTGTTCTCTGCAGCCACACCTCCCCCACCCCC s canFam1.chrUn 89308073 113 - 91062872 AGGGCTGGGCCTCCCTGTGG-GATGGCTTTAGGATGCCACCGGGAAATGGGCCATTCACTTTCTGTTGGGACCATTCTTATTCTGGTCTCTGCAGCCCCGCCCCCCCCACCCCC a score=25788.0 s hg17.chr7_random 638797 143 + 778964 ACCCATTATCGCCTTTAGCATTGCAGCTTCGT--GGGGTATGCTGATGGCATTCCTCACCCGGGGGCTTCTAGGTC--------------------GTAGGGTCCGAACAGAAAAAAACAAGGATGCCCCTAAGCTAGTCCT---GGCCGGTTTCAAATTCCCTCTGC s panTro1.chr6_random 66704602 146 + 67355074 ACCCATTATCGCCTTTAGCATTGCAGCTTCGT--GGGGTATGCTGATGGCATTCCTCACCCGGGGGCTTCTAGGTC--------------------GTAGGGTCCAAACAGAAAAAAACAAGGATGCCCCTAAGCTAGTCCTCCTGGCCGGTTTCAAATTCCCTCTGC s mm5.chr5 12824551 138 - 149219885 CACCATTAATGCTTTTAGCACCAAGCTTCTGTTAAGGTTAAGCCGGTG----TGCCCAATGAGGGGGCTGGAGGCCT-----------CCTCCTTGGGAGGGTCCAAAGAGAAAAA------GCTGTCC-------AGGGCCCCTGG-AGGTTTCAAATTGCTTCTG- s rn3.chr12 16187027 157 + 46649226 CACCATTAATGCTTTTAGCACCAAGCTTCTGTTCAGGTTAAGCTGGTG----TGCCCAATGGGGGGGCTGGAGGCTCTGGGCTTGGGGCCTCCTTGGGAGGGTCCAGAGAGAAAAAAA----ACTGTCCAGGAGGGGGGCCC--TGG-AGGTTTCAAACCGCTTCTGT a score=4807.0 s hg17.chr7_random 638940 80 + 778964 AGTCATGTCCCAGGAGCTCTCTCCTCCTGCCCCAGGGAATGCAGAG--TGGATCTCAGCCCTCCTGTGTCCGTGAGAG-GTTT s panTro1.chr6_random 66704748 82 + 67355074 AGTCATGTCCCAGGAGCTCTCTCCTCCTGCCCCAGGGAATGCAGAGAGTGGATCTCAGCCCTCCTGTGTCCGTGAGAG-GTTT s mm5.chr5 12824689 34 - 149219885 ---------------------------------AAAGAATGGTGTG--TG--------------TGTGTGTGTGTGTGTGTGT a score=2580.0 s hg17.chr7_random 639020 12 + 778964 TGGGGTCTGAAT s panTro1.chr6_random 66704830 12 + 67355074 TGGGGTCTGAAT s mm5.chr5 12824723 12 - 149219885 GTGTGTGTGTGT s canFam1.chrUn 89308437 12 - 91062872 TGGGGTCTGGGC a score=40835.0 s hg17.chr7_random 639032 691 + 778964 AGGATTCTCCTAGTGTCTGGGAGGCTTTGTGTGTGAGA-ATATGGGGGTGGCATCTACCTCCTCTCTT---GCCCCTGGTGGGGGACCTTTTGTAACAT--------AGGGGGGCCTCCTTGGTCCTGTCCAGTCCC-----CTCCC-CAGGTGTGG-------CTGAAAACAGAAC----CAGAGAAACCCACA-GTCTCTCGCCTGAGGACAGGAGA-----GGCACCGGCTGCTCCTCCAGCTTGTAGGGGGTGTCTTTTCTTCAACTCCCGTTCTCTGTCGTAG-----------------------------GGAGGGT-TGTAAACTGG--TTGA--GGTCAGTTCTCATTGGG-TAAGCATCCCTCCGGGTCCTGGACTCCCTTTTCAATCCAGAGGTGCTTCTGGTCTGTTAGGGGCAGGGGACAGTGCAGGGGCTCATGAGGAAGGGGCTGGG-TGCTGGGAGAAACCCAACGCAACGAACTTTCCCTCGGAGTCCCTTT---------ATAACCCTTCCAGGCTGATGTTCTTGGCATTAGGTGCCTCTAAGGCCCACGCTG---TAGGAAGCAGAAAAGAGGCTTTGAGGAATCCCAGGGGTGCGCCCCAGCTATGCTGACTCCTCCTCCAGGTGGGTGGGGCTTTGTGACTGGCATTTGGC-TCCTCCCAGCATGCAGGCTGCGT-CCCACTGTACAGTTGGGGAGA--CTGAGCCAGGCACCGTCTGGGGTCTTGGCCGCTCCTTGACT-GTGGCTGGAGGAGCAC---- s panTro1.chr6_random 66704842 691 + 67355074 AGGATTCTCCTAGTGTCTGGGAGGCTTTGTGTGTGAGA-ATATGGGGGTGGCATCTACCTCCTCTCTT---GCCCCTGGTGGGGGACCCTTTTTAACAT--------AGGGGGGCCTCCTTGGTCCTGTCCAGTCCC-----CTCCC-CAGGTGTGG-------CTGAAAACAGAAC----CAGAGAAACCCACA-GTCTCTCGCCTGAGGACAGGAGA-----GGCACCGGCTGCTTCTCCAGCTTATAGGGGGTGTCTTTTCCTCAACTCCCGTTCTCTATCGTAG-----------------------------GGAGGGT-TGTAAACTGG--TTGA--GGTCAGTTCTCATTGGG-TAAGCATCCCTCCGGGTCCTGGACTCCCTTTTCAATCCAGAGGGGCTTCTGGTCTGTTAGGGGCAGGGGACAGCGCAGGGGCTCATGAGGAAGGGGCTGGG-TGCTGGGAGAAACCCAACGCAACGAACTTTCCCTCGGAGTCCCTTT---------ATAACCCTTCCAGGCTGATGTTCTTGGCATTAGGTGCCTCTAAGGCCCACGCTG---TAGGAAGCAGAAAAGAGGCTTTGAGGAATCCCAGGGGTGCGCCCCAGCTATGCTGACTCCTCCTCCAGGTGGGTGGGGCTTTGTGACTGGCATTTGGC-TCCTCCCAGCATGCAGGCTGCGT-CCCACTGTACAGTTGGGGAGA--CTGAGCCAGGCACCGTCTGGGGTCTTGGCCGCTCCTTGACT-GTGGCTGGAGGAGCAC---- s mm5.chr5 12824735 583 - 149219885 AGGACATCTCCACCCTC------ATTCTACCTATCAGACATTTGGGAAT------------CTCCCTT--------------GGAAACTTCTGGAAGCC--------AAGTGTGCCT--GTGGACTTCTGCTATCCTCCTAGCTTCC-TAGTC-----------TTGAAGACAGAGC----TGGAGGACCCATCATGACACCAACCCAAAGTGGGG-----------------------TCTTCCTTGCTGGG-------------CTATCCCCCTGCTCTGATGTGG-----------------------------AAACTATCTGGAAACTAGTCTTGGCTGGTTGGCTCTCATTCA---------CCTTCTG---------TCTCTTCTTGAAGTGAGGGGCCCTGCGGCTCTGGC--TGCCAGAGGAGGCTGCAGAAGGCTGTGGTAGTCAGTTTTAG-AGTCAGCTGGA---------AAGGCATCCTCACTGGGACATCCCTCAGG------ATGGCCTCTCCAGG-TGAAATCTT--------GCTGTCTCT-ATATCTAGGTTG---CAGGGAGCAGAGAA-AGGCTTAGGGGTGTCCCA------------------GCCAACTCCTCATCCAAGTGGGCGGAGCCTTGTGATTGGCACATGGC-TTGT-CTAGTGAGCTGGCAGCATCCCCATTTTCCAGATGGGGAAACCCTGA---AGGCATCTCCTCCCAACCTTGCAGCTCCTTGGCT-GTG--TGGCCCAGCTCCA-G s rn3.chr12 16187260 526 + 46649226 AGGGGTCTCCC-----TTGGAAACCTCTGAAAGCCAA--GTGTGGATATAGCTTCT-----TCATCTTGAAGACAGGGCTGGAGGACCCCTTGTGACATCAACCCAAAGTGGGGTCTTCCTTA-CTTGGCTATCCCC-----CTGCT-CTGGTATGGAAATTACCTGGAAACTCATCTTGGCTGGTTGGTTCACA-TTCTGTCTCTTGAAGTGAGGAGCCCTATGGCTCTGGCTGCTAGAGGAGCCTGCGGACAG------------------------CTGTGGTAG-----------------------------TCAGTAT-TAGAGTC-AG--CTGG--AAGCGGTTCTCACTGG----GACATCCCCAAG-------GATGGCCTCTCCAGGT----------------------------------------------------------------------------------------------------GAATTCCTTCT--------------------------------------------GTCCCT-ATATCTAGGTTG---CAGGCAGCAGAGAA-AGGCTTAGGGGTGTCCCAG----GCTCCCCA-----GCCAACTCCTCATCCAAGTGGGTGGGGCTTTGTGATTGGCACATGGC-TTGT-CTAGTGAGCTGGCAGCATCCCTGTTTTCCAGATGGGGAAACCCTGA---AGGCATCTCCTCCCAACCTTGCAGCTCCTTGGCT-GTG--TGGCCCAGCTCCA-A s canFam1.chrUn 89308450 645 - 91062872 AGGACTCCTCA--TGCCTGTGAATCT----GGGTGAG--AACTGAGCGGGACTTCTAGGGTCTTTTTT---------GCTAGGAGGCCCCTTGTGACACACATCCCAAAGTGGGTCTCCATC--CTGGTCTGGCCCC-----CTCTCGCAGCCGTGGAAGC---CAGGGCAGTGACC----CAGGGCAGTGCATG-GTCTCTGGCCTGAGCACCAGAGT-----TGCCACAGATGCTTCTAGAACTTGTACTGCA-GTCTTTACCCCAACACCTGTTCTCACCCAAAGCAAAGAGTTGAAACAGATCTTGACACCGTGGAAGGT-TGTAAAC-AG--CTGAGGGGTCAGTTATCTGAGGACTAAGCTGCTCTCCGGGCCCTGGACCCCCAT---------GAGGTCCTGTT---------------GGAGGCCTGTCTGGGATCTGTGAGGAGGGAGCTGGGATGTCGTCCTAAATCC---------------CTCTGTGGGCCACTCCAAGGGTGAACCAGTCCCTTCAGGTTGGTCTTTT-------AGTTGG-----AGAGCTAATCAGGCCCAGGAAGCCAAAGAGATCTTTT----TCTTACAG-----------------GCCCTCTCCTCCTCC---CCCATGGGGCCTTGTGATAGGACCCTGGAGGCCTCCCAGTGGGCA-GCTGCATCCCCATTTCCCAG-----------ATGA---------CACCTGGAGGCAGTAGGGTTCCTCGACCAGCGGCAGTGAGAGCTGCACT a score=-1326.0 s hg17.chr7_random 639723 73 + 778964 GGGTAGTGGGATTCC---------TCACCATCCTCCCGGAGCCC--------AAGCGT-TTCATTCGGAGGGTGTGCTGGAGTGAAGAGTG s panTro1.chr6_random 66705533 73 + 67355074 GGGTAGTGGGATTCC---------TCACCATCCTCCCGGAGCCC--------GAGCGT-TTCATTCGGAGGGTGTGCTGGAGTGAAGAGTG s mm5.chr5 12825318 79 - 149219885 AGGTGGCAAGATTCCAGTGCACTGTCAGGAATGTCCCTGAGCCCA-------GAGCAT-TCCAT---GGCAGAGTCAAGGAGCTCTAAGT- s rn3.chr12 16187786 79 + 46649226 GGGTTGCAGGATTCCAGTACATTGCCAAGAATGTCCCTGAGCCCA-------GAGCAT-TCCAT---GGCAGAGTCAAGGAGCTCTAAGT- s canFam1.chrUn 89309095 37 - 91062872 GAGCCTGAGGATTC----------TCAGCA------CGGAGCCT-----------------------GGGGTCGCT--------------- s galGal2.chr14 16395042 81 - 20603938 GGGCAGGAAATTTT----------TTACTTTCCCTTTAGAAAAAAAGGGAAGGAGCATGTTCATGTGTAGGGTGTGCTGTTATGAAGAGTG a score=62154.0 s hg17.chr7_random 639796 329 + 778964 AAGGCTTTTCACCTGTGGCTTTTAGATCCAGAG-------GCCAGCATGTGGTCTTTTAATGACCGGCAGCC--CGCGTTTAGGGC-------------------------------------------------------------------CTGTTTGT-------------------CCTGTGTG----------------CA-GTGGCA-----GCTGGGGAGCTTTGTTCCCCAAAGTGGTCTGGCCTGGCGCCCGT------GGTTCATTGAGCGGCTGATAACGTAAATAGCCCCATCTCGGGCCAGTAAT---------GCCAGACCAGGACTGATGGTTGGGAGA-TTCTCCCTGTCCT---------------GGAGTTGTCCTTGGGACATCTGTGCCTAAAAGACAAAAGGGAAAGCCTCCTGGTTAACTGTCCTGGGAGCAGTTTTAGGGGTGATTCTTGCCGG s panTro1.chr6_random 66705606 329 + 67355074 AAGGCTTTTCACCTGTGGCTTTTAGAGCCAGAG-------GCCAGCATGTGGTCTTTTAATGACCGGCAGCC--GGCGTTTAGGGC-------------------------------------------------------------------CTGTTTGT-------------------CCTGTGTG----------------CA-GTGGCA-----GCTGGGGAGCTTTGTTCCCCAAAGTGGTCTGGCCTGGCGCCCGT------GGTTCATTGAGCGGCTGATAACGGAAATAGCCCCATCTCGGGCCAGTAAT---------GCCAGACCAGGACTGATGGTTGGGAGA-TTCTCCCTGTCCT---------------GGAGTTGTCCTTGGGACATCTGTGCCTAAAAGACAAAAAGGAAAGCCTCCTGGTTAACTGTCCTGGGAGCAGTTTTAGGGGTGATTCTTGCCGG s mm5.chr5 12825397 399 - 149219885 --GGTCTTTCCAGTGTGGCTTTTGGGTCCAGAGATTCATTACTGGCATGCAGCCTTGCTGTGAACTACAGCTCAGAAGTTCAGGTCGATTCTCA---------------------TTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG----------------TG-TGTGTA-----AC--GGGAGCTTTGTTCTCTAGAGCCG-CTGGCTAGGCG-CCAT------GGGTCATTGAGCAACTGAT-ACATACACA-TCCCATCCCAGGCTACTCACAATATTGTAGTCGGGACAGGGCTAGTG-------GA-CTCTGTCTGTCCTT-CCTCTAGTCATCAGACATTGTCACCCACACATCTG---CAATCGGATAAAGGGAGGTGACT---------TTGACCTGAGAGGGGCTTAGCTACTAATTCATGCTGG s rn3.chr12 16187865 379 + 46649226 --GGTCTTTCCAGTGTGGCTTTTGGCTTCAGAGACCCAAGACCGACATGCGGCCTTGCTGTGAACTGCAGCTCAGAAGTTCAGGTCGACTGTGAGGGAGTGTGTGTGTGTGTGTGT-------------------------------------GTGTGTGT------GTGTGTTTGTGTGTTTGTGTG----------------TGTGTTGTA-----AC--AGGAGCTTTGTTCTCTAGAACTG-CTGGCCAGTTGCCCAT------GGGTCATTGAGTCACTGAT-ACATAAAACATCCCATCCCAGGCGACTCACAATATTGTAGCCAGGACGGGGCTAGTG-------GA-CTATGTCTGTCCTTCCCTCTAGTAATCAGACATTGTCACTCACACATCTG----CATAGGATAAA-GGAGGTGATT---------TTGACCTGAGAGGGACCTAGTCACTGGTTCATGCTGG s canFam1.chrUn 89309132 308 - 91062872 --GACTTTCCACGTGGGGCTCTGGGGTGGAGGG-------ACCAGCGTGTGGTCTTTGAAT----------------TTTTGGGAC-------------------------------------------------------------------TTGTGCAT-------------------CCAGTGTGATAGAAGCTGGCCATTCG-GTGGCAAGGAGGCAGGGGAGCTTTGTTGTCCTA------GCAGCCTGGCGACTGTGCGGTGGGGTCACCGAGCACCTGAT-ACACATGT--CCCCGTCTTGGGCCATTCAT---------GCTCCAGCAGGACCGAGAGCCGGAGGACCTGTCCCCATCCT----------------GAGCTGTCACTTAAAC------------------AAAAGGGGCACCCCTCGATTAAGTGTCCTGAGGGTAGTTCTAGGA-----TCTCGAGTG a score=1103.0 s hg17.chr7_random 640125 16 + 778964 --CCAGGCCACCTGGGCC s panTro1.chr6_random 66705935 16 + 67355074 --CCAGGCCACCTGGGCC s rn3.chr12 16188244 13 + 46649226 -----ACTCACTTGTGTC s canFam1.chrUn 89309440 18 - 91062872 GCGGGGTCTGCCTCAGTC a score=2089.0 s hg17.chr7_random 640141 60 + 778964 TGGGCTGC----------TCAGAGCTGTGTTT------GGTGAGCTGT-------------------------GGGCGGCTTTGGTGAGCGTGGTCCACTC s panTro1.chr6_random 66705951 85 + 67355074 TGGGCTGC----------TCGGAGCTGTGTTT------GGTGAGCTGTGGGCGGCTGCCAGCGTAGATCGGAAGGGCGGCTTTGGTGAGCGTGGTCCACTC s rn3.chr12 30444114 63 - 46649226 --TGCTGCTG-----CTGTCAGAGCTGCGTCT------GGTCAGCTGA-------------------------AGGCAGGTACCATGCCAGTAGTCCATCC s canFam1.chrUn 89309458 69 - 91062872 ---ACTGCTGGATCATTTCTCAAACCGTATCCGTCAGAGGCCACTTGC-------------------------CCACGGC----GTGGACGGCGACCCCCC a score=0.0 s hg17.chr7_random 640201 5 + 778964 TCGGC a score=491.0 s hg17.chr7_random 640201 5 + 778964 TCGGC s panTro1.chr6_random 66706036 5 + 67355074 TCGGC a score=21152.0 s hg17.chr7_random 640206 213 + 778964 ATCTTGAGCTGGGAGCAAAGGGTGGGCTTGGTAGACTGGGAGCTA-TTCCCCCTCTGTCCCTTGTCTCAAGAAATTTGCCAGCTCAGGCTTTCTGGGGGTCAATGAGCTAGCACGGCTGCCGTCTTCTCTGTTTATTAAGCCAGGGCTAG--AGGGTGGCGGGGCACGGGGACTGTGCTCTGTGGACGCAGACCACATGAGTCTCCTGCGAGCCAC s panTro1.chr6_random 66706041 214 + 67355074 ATCTTGAGCTGGGAGCAGAGGGTGGGCTTGGTAGACTGGGAGCTATTTCCCCTTCTGTCCCTTGTCTCAAGAAATTCGCCAGCTCAGGCTTTCTGGGGGTCAATGAACTAGCACGGCTGCCGTCTTCTCTGTTTATTAAGCCAGGGCTGG--AGGGTGGCGGGGCACGGGGACTGTGCTCTGTGGACGCAGACCACATGAGTCTCCTGCGAGCCAC s canFam1.chrUn 89309527 159 - 91062872 ATCTTGATCGGGGGGCAGAAGA-GGGCTTGTTTGCCTAGGAGCTC-TTTCTCCTC---CCC------------ATCTGCCGGGTCGGATTTCAGCGCTGTCCACCCGCCGG--GGGCTGTGGTCCTCTCTGC------------GGCCTGCTGGGGAGGCGAGGGCTGGTGTCCCCGCTC--------------------ATCCTCCGCC------ a score=-244.0 s hg17.chr7_random 640419 5 + 778964 TT---CTG s panTro1.chr6_random 66706255 8 + 67355074 TTCTCCTG s mm5.chr5 12826514 5 - 149219885 ---TCTTT s canFam1.chrUn 89309686 5 - 91062872 ---TCCTG a score=156587.0 s hg17.chr7_random 640424 604 + 778964 -GTCCTGTTATatttctctgggcctcagtttcctcggatgtgaag---aagtgatagcacccaccgcacactcagaagctaagtcattggtaaagcagctaatgcaa---acgtggctatcacaaggcatcggaaaatgggagctggtgttattGAATTTTCT-------CCTACGAGTGGAGAACGGACCCGTTACTCTTTGGTTTGGCCATGGCAAGATGGCCACCACCAGGATGTGATTCATAAGTGTCAC-TTTTTCATGAAAAGAAATGCTGC-TTGTAACAGTTGGTTGATGGGAAATTCTTACTGCATGAGTAGTTCTGTTCTGATCTTATTTTGGGTCTCAAAA-AAAATTAGTGTCATTGGAACATTGAGTCATTTTCGGTAAAAAGTTGGGCTCCGGGCGAGCTTCG-------------------TCTTTGCC--TGACACCTTCTGTGAGGTTTGCGGGCTTCATTTTAAATCCGCAGGC-----TCCTCGGGGGTGCGGAGGAAGCTGAGGTTTCTCCGGTTGGTTTGTGGATAGTCACGGATGCCTCGATGGGCTGGGGAGAGACACTTTGGGCTGCTAGTCCTGAACCCAGGAGGTGCAGAGCCCATTA-GCCGTCTGGAT-----TGGTGACCGGGA s panTro1.chr6_random 66706263 604 + 67355074 -GTCTTGTTATATTTATCTGGGCCTCAGTTTCCTCGGATGTGAAG---AAGTGATAGCACCCACCGCATACTCAGAAGCTAAGTCATTGGTAAAGCAGCTAATGCAA---ACGTGGCTATCACGAGGCATCGGAAAATGGGAGCTGGTGTTATTGAATTTTCT-------CCTACGAGTGGAGAACGGACCCGTTACTCTTTGGTTTGGCCATGGCAAGATGGCCACCACCAGGATGTGACTCATAAGTGTCAC-TTTTTCATGAAAAGAAATGCTGC-TTGTAACAGTTGGTTGATGGGAAATTCTTACTGCATGAGTAGTTCTGTTCTGATCTTATTTTGGGTCTCAAAA-AAAATTAGTGTCATTGGAACATTGAGTCATTTTCGGTAAAAAGTTGGGCTCCGGGCGAGCTTTG-------------------TCTTTGCC--TGACACCTTCTGTGAGGTTTGCGGGCTTCATTTTAAATCCGCAGGC-----TCCTCGGGGGTGCGGAGGAAGCTGAGGTTTCTCCGGTTGGTTTGCGGATAGTCATGGATGCCTCGGTGGGCTGGGGAGAGACACTTTGGGCTGCTAGTCCTGAACCCAGGAGGTGCAGAGCCCATTA-GCCATCTGGGC-----TGGTGACCGGGA s mm5.chr5 12826519 546 - 149219885 -GTCTTGTTCAGTTTCTCTGGACTCTAGTGCCCTGGCCTCTGCAG--TCAGTGA---CATCTACTATGTACAT------------------------GTTGAGGCAA--------------GCCAGGCATCAGAGGACCACAGTTGGTACCACCGCCCTTTCTTGCAGGCCCTGTGAGTGGATGGCCCATTCATTTCTTGTTGAATTGGTCACAGCAGGATGGTCATCACTAGGTCGTGACTCACCA-CGTCACTTTTTTTTTGTGAAGAGACGCTTCTTTGTAACAGTTGGTTGATGGGAAATTTTTACTGCATGAGCA-----GTTCTGATCTTATTTTGGGTCTTAAAATAAAATCGGTGCCATTGGAACATTGAGTCATTTTAAATAGTTTTTTGGGCCC------AGATTCA-------------------TCGTTGACATTCACACCTTAGTCGAGCCTT-TGCTTTTTATCTTAAATGTGTGGGTAGAGGACGTCTGAGG-GTGGAGGAGGCTGGCGTGTCTCCTGTTGG-TTGTGGATGGT--GTGGTACCT-AATAGGCTTTGTATCGCCTGCTAGGGAAACTGTCCATTTGGGCAGGATGT--------CACTA-AATGTTGGGAC----------------- s rn3.chr12 16188986 483 + 46649226 -GTCTTGTTCAGTTTTTCTGGACTCTAGTGCCCTGGCCTCTGCAAAGTCAGTGA---CACCTACTATGTGCAT------------------------GTTGAGGCAA--------------GCGAGGCATCAGCGGACCACAGTCGG----------CCCTCTCGCGGGCCCTGTGAGTGGATGGCCCATTCATTTCTTGTTGGATTGGTCATAGCGGGATGGTCATCATTAGGTCATGACTCACCA-TGTCAC-TTTTTT-TGTGAAGAGATGCTTCTTTGTAACAGTTGGTTGATGGGAAATTTTTACTGCATGAGCA-----GTTCTGATCTTATTTTGGGTCTTAAAATAAAATCGGTGCCATTGGAACACTGAGTCATTTTAGATAGTTTTTTGGGCTC------AGATTCA-------------------TCGTTGACATTCACACCTTAGACGAGTCTT-TGCTTTTTATCTTAAGTGTGTGGGT-----------------------------------------------------------AGGAGACGTCTCAGGGTGGAGGAG--------------GCTGGTTGTG------GATGGTGTGGTACCTAGTAGGCTGTGTGTAT-----CTCTCGCTAGGA s canFam1.chrUn 89309691 513 - 91062872 GGCCTAGTT--------------CCTGGTGTC------GGTACGG---TGGTGG---CAGCTCCCGCGGACTAAGGACCGAGCCGGT----------GGTGAAGCGAGCCGCGGGGCTTTAGCAAGGC-CCGGAAGATGGTGGCCGCTG----GGGAGTCTC--------CCTGGACGCCGCGGCTGGACCAGCTGCTCTTGGGTTTGAGGGTGGCAAGATGGCTACCACCGGGACGTGACTCATAAATGTCAC-TTTTTC--GTGAAAAAATGCTTC-TTGTAACAGTTGGTTGATGGGAAATTCTTATTGCATGAATAGTTGTGTTCTGATCTTATTTTGGGTCTCAAA--AAAATTAGTGGCAGTGGAACATTGAGTCATTTTAAGTGAGAAGTTGGGTTCTTCCCAGACTTTAGTTGTCTGAAAGAACACATCTTTTGCCATTTGTATCTTTTGCCTGGTTTTCGGTTTTCATTTTAAACGAGTGGAG--------------------------------------------GTTTGTGGATAGTCGCTGAGGCCCCGGTGGGTTGGGCA---------------------------CCCAGGAGGG--------------GGCGTCTGGTCAGGCCTGGTGGCCAGGA a score=2897.0 s hg17.chr7_random 641028 117 + 778964 --CTTCCCAAGCTTCCCAGGA-----------------GGGGGCAGGGAGATCTCTGTGCCT-CTGGAGCATCCTGGCTGTGAGGCTCACTGTCTCCGCG-CCTGTTCACCCTTGGTTATATGGTGG-GGGGGGCAGGA s panTro1.chr6_random 66706867 118 + 67355074 --CTTCCTGAGCTTCCCAGGA-----------------GGGGGCGGGGAGATCTCTGTGCCT-CTGGAGCATCCTGGCTGTGAGGCTCACTGTCTCCGCG-CCTGTTCACCCTTGGTTATATGGTGGAGAGGGGCAGGA s mm5.chr5 12827065 43 - 149219885 --------------CCAAGGA-----------------GGAGGAAG---------TTTGC---TTGGAG------------------------TTCTGC-----------------------------GTGGTATAGGC s canFam1.chrUn 89310204 125 - 91062872 CACCACTTGAGCTTCTTAGGGACGGGACAGCAGGACATGGTGGTGGGGTGGTCTGCGCAGCTGCTGGAG-TCCCCGGCTGTTGGGGTGCGCTTCTCAGGACCCTGCTCATCTCCT-------------GGGGAGCAGAA a score=0.0 s hg17.chr7_random 641145 15 + 778964 TGGAGGGAGATGGGA a score=1537.0 s hg17.chr7_random 641145 11 + 778964 TGGAGGGAGAT s panTro1.chr6_random 66706985 11 + 67355074 TGGAGGGAGAT s mm5.chr5 12827108 11 - 149219885 TGGAAAGGCAG a score=-37.0 s hg17.chr7_random 641156 4 + 778964 GGGA s mm5.chr5 12827119 4 - 149219885 GTGT a score=-340.0 s hg17.chr7_random 641160 109 + 778964 AGAGACTCCCCAGCTGGGACCAGGGGGCCAAGGCAAGGA----GGCCCAGAG-CCACCCGCGGTGCCCAGGTGCGGGCAGTGTG---------------TCCATG--------GGCAGGACT--GTGGGTCC-------------TCTCCCT s mm5.chr5 12827123 90 - 149219885 AGATTGACTGTATTTGGGGCT--GAGCCTGTGGCGGGGCTCTTGTCCCAAGG---AATTGCAGAACTCAG----GGGCAGTGTA----------------------------------------GTGGCCCC-------------TTCTTCT s canFam1.chrUn 89310329 147 - 91062872 GGAGACCCCCTAGCTGGGTCT-GGGGGCCGAGGCGGGGA----GAACCAAGGGTGACCCCTTTTATCCAGGGGCAGGCAGTGTCATTGGAGCGGGTCGGTCCCAGTGGCAGGTGGCAGGACTGAGTGTGTCCCTCCCACCCCACTTCTCCCT a score=-6516.0 s hg17.chr7_random 641269 61 + 778964 ACTGCGGGATTTGGAGAGACCTGAGACTCCCCCAGCCTGTCT-----GCTGTAGCCGTCAGCGCCT s mm5.chr5 12827213 17 - 149219885 GTTCTGG-------------------------------------------------GTCAGTGTAT s rn3.chr12 16189688 32 + 46649226 ACTGCAGAACTTGGGGCACTGT----------------------------------AGCAGCCTCT s canFam1.chrUn 89310476 57 - 91062872 --TCTAGGAATCTGAGGGACCTGGAACTCCCCTAAGCTGCCCCAGAGGCACCAG--GGCGG----- a score=3197.0 s hg17.chr7_random 641330 211 + 778964 GTGAAGGGG---TGGTGTGTGCAGCTGGGTGGGGTGGCGGGGATAGGTTCTCAGTTCTGCTCCCCGGT-CAGTGCTGGTCTTGGCTCTGGGCCACTGCC--CCACCTGCACCTGGCCGCCTGGCTGTAAACACGGCTCGCAGATGCCAGCTTCTCTCAACCCCTCTCC-GCAGGCCGCCTCCCTCTGT--------CAGGCTGCG---GGAACTCC-TCCGTGTAGCCTC s panTro1.chr6_random 66707622 210 + 67355074 GTGAAGGGG---TGATGTGTGC-GCTGGGTGGGGTGGCGGGGATAGGTTCTCAGTTCTGCTCCCCGGT-CAGTGCTGGTCTTGGCTCTGGGCCACTGCC--CCACCTGCACCTGGCCGCCTGGCTGTAAACACGGCTTGCAGATGCCAGCTTCTCTCAACCCCTCTCC-GCAGGCCGCCTCCCTCTGT--------CAGGCTGCG---GGAACTCC-TCCGTGTAGCCTC s mm5.chr5 12827230 187 - 149219885 -CTCAGGGG---CTAGGTTTTC-------CGGGCTGAC-----------CTCAACTCTG-TCCTCAGT-TGGTG-----------GCTGTACCTCTGCTGAGCGCCTG---GTGGCCCTCAAGGTAGAAACAC-TCCTGCAGGTGCC-TCTGCTCTC-CTTTCTCTCT-TCTGTATGCCTCGCTGTCTTAGTCACCCAGCCCTCGCTTGGGACTCC-AGCCTCAGTCCTC s rn3.chr12 16189726 195 + 46649226 GTGATGGGC---CAGCGTATCT-------CAGA-------GGCTGGGCTCTCCCAGCTGACCTTAAAT-CTGTCCTCAGTCTGTAACTCTACCTCTGCTGAGCACCTG---GTGGCCCTCAAGGTGCGAACAC-TCCTTCAGGTGCT-GCCGCCTGCCTCCTGTCTCCTTCTGTATGCCTTGCTCCCTTATTCAC-CTAGCCCTG---GGGACTC--------TAGCCTC s canFam1.chrUn 89310533 167 - 91062872 GCGAGGCTGCTCCTATGTGTGC-------CAGG--GGCTGTTGTAGGCCTGGAAGACTA-----GGGTACAGCTTTGATGTTAGCACTGGG--ACTGTT-------GGTGTGCGGCCGATGGGCAGCACGCTCGCCTTCCTG---------------------------CCAGTTGGCCCCTCTGC----------CAGGCACTG---GGATTTCTGTCCCTTTACTTTC a score=797.0 s hg17.chr7_random 641541 12 + 778964 CACGAGAGGCCA s panTro1.chr6_random 66707832 12 + 67355074 CACGAGAGGCCA s mm5.chr5 12827417 12 - 149219885 TCTCAGCTACCA s canFam1.chrUn 89310700 4 - 91062872 --------CCCA a score=103689.0 s hg17.chr7_random 641553 423 + 778964 CGTGCCCTCCTGCCTCTCCTCATGGCCGCTGGCCCT-AGAGTAGACTCATTTCAGGAATGAGTGGGGTCTGGCCCGCAGCCCAGTCTGGCG--GCTTCCAGTGCCCCTCAGAGGTTAGGCCACTTCTTCCAGGAGTGCTTTAGTGAGGGGGAGGGAGGGAGACGTACAGGCAC--CTGCAGAAATC---TCAGCGGCCTCTGCTTCTCCC----TCGCTCCAGCCCCCAGACAGAGGTGGGGCCTGGCTTAGCCCTGTGCCCCTCGGGGAGGTGCACGGAGCTGGGCGGCCTCAGG-CCCCTCCTGCCCCGGGGCAGCCCTCACCTGGGCTACCTTGGAGGAGGCACCGTAGGGGAGACCACCTGCAACCTCTTCCCCGAAGGGCCCTGCGCTTCGT----------------CACGGGCCCCTGAATGTGGGGACCTCTGTG-----CTAAC--------GGGG s panTro1.chr6_random 66707844 423 + 67355074 CGTGCCCTCCTGCCTCTCCTCGTGGCCGCTGGCCCT-AGAGTAGACTCATTTCAGGAATGAGTGGGGTCTGGCCCGCAGCCCAGTCTGGCG--GCTTCCAGTGCCCCTCAGAGGTTAGGCCACTCCTTCCAGGAGCGCTTTAGTGAGGGGGAGGGAGGGAGACGTACAGGCAC--CTGCAGAAATC---TCAGCGGCCTCTGCTTCTCCC----TCGCTCCAGCCCCCAGACAGAGGTGGGGCCTGGCTTAGCCCTGTGCCCCTCGGGGAGGTGCGCGGAGCTGGGCGGCCTCAGG-CCCCTCCTGCCCCGGGGCAGCCCTCACCTGGGCTACCTTGGAGGAGGCACCGTAGGGGAGACCACCTGCAACCTCTTCCCCGAAGGGCCCTGCGCTTCGT----------------CACGGGCCCCTGAATTTGGGGACCTCTGTG-----CTAAT--------GGGG s mm5.chr5 12827431 400 - 149219885 CGCACCCCTTTGCTGTTTCTCATGGCCTCTGGCCCTCCGAGCAGGCTTATTTCAGGAAC-AGTGGAGGTTGGCTGGCAGCCCAGTCTGGCGTTGCTTCCGATGCCCCTCAGAGGTTAGGGCATTTCATCAAAGCCTGCTTTA-CAAGAGGGA-----GGCGCTGTACACACAA--CAGCAGGAG-----AGAGAGGCAGCCGCCCTTCCCATTTTTGCTTCAGCTGC--GATGGTAGTA----CTGCTTCAAGACTGGGCTC-----------------AGCTGGGTGGCCTTGGGACTTTTCCTGACCCAGTGCAGTCCTC-CAGGGGTTCCCTTCGGAG-----TCATAAGGGAGATTACCTG-AGTGCCTTCCTGAATGAACCTCAGAATTTCA----------------CAGGAGAGCTGCACTTGGGGGACATGTATA-----CTGACAAGATGATAGGG s rn3.chr12 16189935 389 + 46649226 CGCACCCCTTTGCTGTTTCTCATGGCCTCTGGCCCTCAGAGCAGGCTTATTTCAGGAACTTGTGGAGGTTGGCTTGCAGCCCGGTCTGGCGTTGCTTCCGATGCCCCTCAGAGGTTAGGGCATTTCATCAAAGCCTGCTTTA-CAAGAGGGAGG---CGCGCTGTACACACACAACAGCAGGAG---------AGGCAGCCGCTCTTCCCCTCTTTGCTTCGTC-----GATAGTGGTG----CTGCTCCAGAACTGGGCCC-----------------AGCTGGGTGGCCTTGGG-ACTTTCCTGACCCAGTACAGTCCTC-CAAGGGTTTCCTTCAGAG-----TCGTAAGCGAGAGTACCTG-AATGCCTTCCTGAGAGAACCTCAGAATCTCA----------------CAGGAGAGTGACGCTTTGGGGACATGCATA-----CTGAC--------AAGA s canFam1.chrUn 89310704 341 - 91062872 --------CTTGC-----------ACTTGTGGCCTG-GGTATGGATTAACTTCAAGAACAAGTGGGGTCCAGTTGTTGGCCCAGTCTGGCC-TATTCCCCATGCCCCTCAAAGGTCAGG---------------GTGCTCCAAAAAGATGGAGAG--AGCCACATGCAGACAC--CAG-AAAAGTCACAGCAGCAGCCTCTGCTGGTCCT----TTGGTGCT-------GTCGGAGGGT-------------TCCTGTCCCC---------------------GGGTAGTTTTGG--CTCTTACTTACCTCCTCCAGCCGTCACCTGGG-------------------------GAGATCCCCTG---CCCCTTCCCCACAGGTCTGTAGCTTTGCTGCAAAGTGCAATGGGGTGGGGGGGGCACATTTGGGGGACCTCCGTGTAGGCTTCAC--------AGAG a score=0.0 s hg17.chr7_random 641976 1 + 778964 C a score=-128.0 s hg17.chr7_random 641976 1 + 778964 C s panTro1.chr6_random 66708267 1 + 67355074 C s mm5.chr5 12827831 1 - 149219885 A a score=2417.0 s hg17.chr7_random 641977 26 + 778964 GTTTTCTGCGGTTTCCAGTGTTTCAT s panTro1.chr6_random 66708268 26 + 67355074 ATTTTCTGCGGTTTCCAGTGTTTCAT s mm5.chr5 12827832 11 - 149219885 GTTGGTTGAAG--------------- s canFam1.chrUn 89311045 26 - 91062872 GTTTTCAGCAGTTGGGAGTCTTTCAT a score=0.0 s hg17.chr7_random 642003 8 + 778964 GCCCTGCA a score=491.0 s hg17.chr7_random 642003 5 + 778964 GCCCT s panTro1.chr6_random 66708294 5 + 67355074 GCCCT a score=1746.0 s hg17.chr7_random 642008 3 + 778964 GCA s panTro1.chr6_random 66708299 3 + 67355074 GCA s mm5.chr5 12827843 3 - 149219885 GCA s rn3.chr12 16190344 3 + 46649226 GCA a score=9814.0 s hg17.chr7_random 642011 172 + 778964 TCTCTGGAAAGCCCTGGTGGGAATCGAGGTTCTCCTGGAGGGCCCCTAATGGCGGGAGCTGTGAGGGGCTGTGCCGCCAGGTGCCTGTTCCCCAGTGGCTCCCAAAGCTGGTCTGTGGGAAGTGCGGCTGGACAGG-CCCAGG-GCAC---AGCGC--ACGGGCCTGGGGCATTCACGG s panTro1.chr6_random 66708302 172 + 67355074 TCTCTGGAAAGCCCTGGTGGGAATCGAGGTTCTCCTGGGGGGCCCCTAATGGCGGGAGCTGTGAGGGGCTGTGCCGCCAGGTGCCTGTTCCCCAGTGGCTCCCAAAGCTGGTCTGTGGGAAGTGCGGCTGGACAGG-CCCAGG-GCAC---AGCGC--ACGGGCCTGGAGCATTCACGG s mm5.chr5 12827846 146 - 149219885 CATCTGTAAACCCCC--------------CTTTCGAGCAGAGC-----------AGAGTTGTCTGGGCTTGGG--GACTGG-GCCCTTTGTCCTCTTGCTCTGAAACCTG--CTGTAGAAGCCCCAGCTGTTTAGGTCCCAGG-GGGTGTGATTAC--ATACGTGTGGACTCTTTACCA s rn3.chr12 16190347 141 + 46649226 CATCTGTAAACCCTGTATGCAAGCAGAGGGTCT---------------------GGGACTG---GGGATTTGAACACT----ACCCCTTGTCCC---ACTCTGAAACCTA--CTGTATAAGCCTCAGTTAATTAGGTCCCAGGAGTAT---GGTAC--ATACGTGTGGGCACTTTACCA s canFam1.chrUn 89311071 119 - 91062872 TCTCTGGATAC-----ATGGGAGTGGAGGGTCTCCCAG----------------GGGACTC---------------------GCCTG----------CCTCTGGGAGG----CAGGTGGGAGCGCTGCTGGAAAGGCCCCCGG-GCAT---CACACTGATGGGAGCCAGCCGGTCACTA a score=103547.0 s hg17.chr7_random 642183 127 + 778964 TGTTCTCCTTC----CGCCTGCAGGGAGTGAGGATTCTTTGGACACCAGCCTGAGAGCTCACGGGGTCCATGCCACTAAGCATGTGCCCGAGAAGCGGCCCCTGCCCATTCGGAGGAAGAGAAGCATCGGT s panTro1.chr6_random 66708474 131 + 67355074 TGCTCTCCTTCACGGTGCCTGCAGGGAGTGAGGATTCTTTGGACACCAGCCTGAGAGTTCACGGGGTCCACGCCACTAAGCATGCGCCCGAGAAGCGGCCCCTGCCCATTCGAAGGAAGAGAAGCATCGGT s mm5.chr5 12827992 128 - 149219885 TATTTTTCTTTC---TACTTTCAGGGGCTGAGGATGCCTTGGAGACAAGTCTGAGAGCCCATGGGTCCCATGCCATTAACCATGTGCCCGAGAAGCGGCCTGTGCCCATTCGCAGGAAGAGAAGTATTGGT s rn3.chr12 16190488 128 + 46649226 TATTTTTCTTTC---TACTCTTAGGGGCTGAGGATGCCTTGGAGACAAACCTGAGAGCCCATGGGTCCCACACTGTTAAGCATGTGCCGGAGAAGCGGCCTGTGCCCATCCGCAGGAAGAGAAGTATTGGT s canFam1.chrUn 89311190 123 - 91062872 TTTCCTCTTTC----TA----TAGGGGCCGAGGATGCTTTGGAAGCAAGTCTGAGAGCCCACGGGGGCCATGCCACCAAGCATGCACCTGAGAAGCGGCCTGTGCCCATTCGGAGGAAAAGAAGCATTGGT s galGal2.chr14 16396258 127 - 20603938 TACTTTGTTTC----GTCTTTCAGGATACGATGATGTTTCAGAGACAAACTTGAGGTCTTATAGTGTTCATTCTGCTAAACATGTGCAAGAGAACCGTCCTGTGCCCATTCGCAGAAAAAGAAGCATTGGT a score=2852.0 s hg17.chr7_random 642310 92 + 778964 GAGTCCAGGAggccgcgatg-ggcagggcagggccgggtcagggtgagtccaggaggccgcgatgggcagggcagggccgggtggggAGGAGC s panTro1.chr6_random 66708605 92 + 67355074 GAGTCCAGGAGGCCGCGATg-ggcagggcagggccgggtcggggtgagtccaggaggcagcgatgggcagggcagggccgggtggggAGGAGC s mm5.chr5 12828120 67 - 149219885 GAGCACGGGAGGCTGTGCGC-TGTGTGGCAG------------------CTGGAAGG-------GGGCAGGTTCCCACTGGGGCTGTGAGTGC s rn3.chr12 16190616 59 + 46649226 GAGCATGGACGGCCATGTGGCAGCGGAAAGGGGCTGGTTCCCACTGGAGCTGTGAGG----------------------------------GC s canFam1.chrUn 89311313 63 - 91062872 GAGCCCTG--GGCC-TGCAG-GGTGGGGAAGGG-------------------GACGG-------GGGCTAGGCCCTCTGGAGGGCTGAGGGGC a score=75068.0 s hg17.chr7_random 642402 407 + 778964 TGCCCGCTCTCCCAGCGC--AGTGGCCTCAGGCA------AGCCACCC-GTTCCCTCCTCCCTAAA-------------------ATAGGCCTGGCCCTGGTGCCTCTGGCT--CTGGCCTCTCCC---GAGGCCTCCCTCCT---TC-------GAGGGTGTCTCCT-GCCCCAGCCCGCCTGCTCCTCCTGGAGT---CCTG-GTCTGGGCCAAGAGAGCTTCCAGGAGAGAAGAGCCATCATAAATTCCTTAAGCGCCCTGTCTTGTCGGGGCCTGT---CCCCA--GGAGCCTTGCCGG-AAACGTGGTCGCGCCTAATTTCCAATTCGCAGTGTGG-G---CATCGTGCT--CCT--GCGCCGGCTGCTGAA--CTGGTGGGGAC--GCGCGTGCTGTGTCCGGC-GGCTGCCCCCC---GACACCCTCACCACACCC------------GTGTGCCCCG---------------CCCCACTCA----CACCTGGCTCCAGGG s panTro1.chr6_random 66708697 407 + 67355074 TGCCCGCTCTCCCAACGC--AGTAGCCTCAGGCA------AGCCATCC-GTTCCCTCCTCCCTAAA-------------------ATAGGCCTGGCCCTGGTGCCTCTGGCT--CTGGCCTCT-CC---GAGGCCTCCCTCCT---TC-------GGGGGTGTCTCCT-GCCCCAGCCCGCCTGCTCCTCCTGGAGT---CCTG-GTCTGGGCCAAGAGAGCTTCCAGGAGAGAAGAGCCATCATAAATTCCTTAAGCGCCCTGTCTTGTCGGGGCCTGT---CCCCA--GGAGCCTTGCTGG-AAACGTGGTCGCGCCTAATTTCCAATTCGCAGTGTGG-G---CATCGTGCT--CCT--GCGCCGGCTGCTGAA--CTGGTGGGGAC--GCGCGTGCTGTGTCCCGC-GGCTGCCCCCCG--GACGCCCTCACCACACCC------------GTGTGCCCCG---------------CCCCACTCA----CACCTGGCTCCAGGG s mm5.chr5 12828187 387 - 149219885 TCCGTGCTAACTCGGTCC------TCCTCCAGCAC-----AGCCACAC-ATCCCTTCTCCACCAAA------------------CAAAGGCTTTG-----------CTGGCCTGCTGCCCTCC-CCAGGGAGGCAGCCCTCTTC--TC-------TAGAGTGTCTCCT-----------GCCTGC-CCTTCTGCAGT---CTTGTGCCTGGGCCA--AGAGTTTCCAGGAGGGGAA---CATTATAAATTCCTTAAGTGCCCAGTCTTGTCAGGGCCTGT---CTACAAGGAGGCTTCGTTGGAAAACGTGGCTGTGCTTACTTTTCAGTTCCTGAGGTGA-GCTCCAGCGTGCTCCCCT--GCTTCAGCTGCAGAAGCCGGGTGCAGCCTGGAGTGTGCTGGGGCCCAC-AGCTG---------GAGGA---CACCTCTTCC------------AGAGACCCTA---------------CCTCACTCA----CCTTTGGCTCTAGGG s rn3.chr12 16190675 370 + 46649226 TTCCTGCTAACTCAAG--------GCCTTGGGTAC-----AGCCACAT-ATCC---CTCCACTAAA------------------CAAAGGCTTCA-----------CTGGCCCCCTGCCCTCC-GCATGGAGGCAGGCCTCTT---TCTCTTCTATAGAGTGTCTCCT-----------GCCTG--------GGAGT---CTTGTGCCTGGGCCA--AGAGTTTCCAGGAGGGGAA---CATTATAAATTCCTTAAGTGCCCAGTCTTGTCAGGACCTGT---CTATAAGGAGGCTTCGTTGGAAAACGTGGCCGTGCTTAATTTTCAGTTCCTGATGTGA-GCTCCAGCATGCT--CTTGGGCTTCAGCTGCAGAATCCGGGTGCAGCCTGGAGTGTGCTGGGGCCCA------------------------CACCTCTTTC------------AGAGACCCTA---------------CCTCTCTCA----CCTTTGACTCTGGGG s canFam1.chrUn 89311376 413 - 91062872 T-----CTCATCCACTGT------GCCT---------------CACCC-CTTCGCTCCTCCATAAAACAAAGACACAACGTGTGCAGGGGCCCAGCGACTTCAGCCCTGGCCGCCCGCCTTCT-CTCCGGAGGCCTCCCTCCTCTGCC-------GGGGGCGTCTCCCTGCCCCGGCCCGTCTGCTGCTTGCTGAG----CCTG-GCCTGGGCCA--AGAGATTCCAGGAGAGGAGAGCCATCATAAATTCCTTAAGTGCCCGGTCTTGTCGGGGCCTGT---TCTGGAGGAGGCCTCGCTGGAAAACGTGGTCGTGTTTCATTTCCAGTTTGTAATGTGGTGCACGGGCGTGCTGGCCA--G---CAGCTGCAGAG----TGTGGGGGT--CAGCCTGCTGCATGCAC---GCCCCCCCCCGCAGATGC-----CCCTGCCC------------ACGGCCCCCA---------------CTGTACTCA----GGCTTGCCTCCTAGG s danRer1.chrNA 208246524 407 + 390413307 TGCCCCCTTTCCTTCCACCTAGGGGCTTCTGACCCCAGCAAGCGACCCAGTTTCCGCGTCTCT---------------------CACTGGACTTGCTGTATAGGCCCCAGAG---TGCCCCCT-----------GGCCCTCCA---CC-------TAGGG-GCCTCTG-ACCCCAGTAAGC-----TACCCTGTAGTCCACCTCTGTTTG-------TGGACTTGCAGAATAGG-----CCCCAGGGTGCCCCCTGTCCCTCAACCTAG---GGGCCTCTGACCCCTG--CAAGCTACCCAGG------GGACCACCTCTCTTCCTGGACTTGCAGTATAG-GCCCCAGACTGC---CTT-----CTGGCCTTCCAA----CAAGGGGCC--------TCTGACCCCAGCAAGCTACCCA-----GGGGTCCAGCCCTCTCCCTGGAATTGCAGTAAAGGCCCCAGGATGCCCACTGGCCCTCCACCTAGGGGCCTCTGACTCTAGCA a score=-19270.0 s hg17.chr7_random 642809 158 + 778964 CTCCACCCCCGCGTCCATTTGGGG---GATATTTTGTCCCT----T--CTTACAGGACAG-----------CCCCATGGCCCTCCAGCCCCCTGAGGAGGA-ACTAGCAGGTTTGGGGA----------GTTCAGGGGCCAGTCCCTGC--------TTTCTACCCA------------------------------AGTCCCG---CGTC--CTCGGGGGTCCCACCTG--------------At s panTro1.chr6_random 66709104 158 + 67355074 CTCCACCCCCGCCTCCATTTGGGG---GATATTTTGTCCCT----T--CTTACAGGACAG-----------CCTCATGGCCCTCCAGCCCCCTGAGGAGGA-ACTAGCAGGTTTGGGGA----------GTTCCGGGGCCAGTCCCTGC--------TTTCTACCCA------------------------------AGTCCCG---CGTC--CTCGGGGGTCCCACCTG--------------AT s rn3.chr12 16191045 113 + 46649226 TTCCACCTGACTCTCATTCTGGGGAAAAAAATTATATCC--------------------------------TCCCAAGACCTCTGCTCTTCATAGGGTGGA-AT--------------------------TTCAGGTGTGATTCAC-------------CCTATCCT------------------------------AGCTCAG---------ATAAGGGGGCT---------------------- s canFam1.chrUn 89311789 222 - 91062872 -TTCTGCTGGGCATGGGTTTGGGG---GTTGTTTTCATCCTGCCCT--CTAGCAGACTAT-----------CCTCATGTCTGTCTAGCTCCTGGAGGCTG---CTAGGGGTCTCCTGGACTCTGGCTCTGCTCTGAGACCCATCTTGGCCTGC-ACTTTCTTGCCCTGGAGGCAGGGTTAGGGCATGTGATCCACCGAGTCCCA---TGCCAACCGGGAAAGTCCTCCTGCTTTTCCTAACTACCT s danRer1.chrNA 208246931 167 + 390413307 AGCTACCCAGGTGTCCACC-------------TCTCTTCCT----TGACTTGCAGTATAGGCCCCAGAGTTTCCCCTGGCCCTCCACATATTGGCCTCTGACCCCAGCAAGCT----------------ACCCAGGGGTCCACCTCTCTCCCCGGACTTGCAGTATA------------------------------GGCTCCAGGGTGCC--CCCAGGCCCTTCACCTA--------------AG a score=16815.0 s hg17.chr7_random 642967 93 + 778964 gggtttgagccc--------tggtgc--tgctcatggctctggggccctgagcaggtggacccccctctc--tgagctgtggtttcctccatgaagatggatttt s panTro1.chr6_random 66709262 93 + 67355074 GGGTTTGAGCCC--------TGGTGC--TGCTCATGGCTCTGGGGCCCTGAGCAGGTGGACCCCCCTCTC--TGAGCTGTGGTTTCCAACATGAAGATGGATTTT s rn3.chr12 16191158 95 + 46649226 --GTCTGTGTAC--------TGTTGAGGTACTGGCTGCTGTGTGAGCCTAGGCAAGTAGATCCCTCTCTCTGTGAGATTTAGTTACCAGTAAAAAGGTAGATTTT s canFam1.chrUn 89312011 98 - 91062872 GGGTGTGACCCCCCCACACACACTGC--TTTTCTGTGCCGTGTGACTGTGGGCAGT--GACTGCCCCCTC--TGAGCT-TATCTTCCTTCTAGAAGGTAGATTCT a score=186.0 s hg17.chr7_random 643060 12 + 778964 ---gtatcttccacc s panTro1.chr6_random 66709355 12 + 67355074 ---GTATCTTCCACC s canFam1.chrUn 89312109 12 - 91062872 GATGCTGCTTCA--- a score=358.0 s hg17.chr7_random 643072 17 + 778964 ttaaagtgtcatgtgtg s canFam1.chrUn 89312121 17 - 91062872 GTCGAGTGCAGTGCATG a score=-6631.0 s hg17.chr7_random 643089 129 + 778964 GCTGGCTAGTCCCAGCTGATGCAAGCAGGCCCTCCCCAG------------------------GTGACATTTGCTGTGGGGTCTGCA--TTTTGCACCCTTCAGACCACTTTTGAAGGCTAGAGCATGCAGCAAGTGCTGTAGGATTCACTGTTA s canFam1.chrUn 89312138 87 - 91062872 AA-GGCCGG------------------GGGCCCACCCAG------------------------AGGATGTTGATTGTAGGG-CTGTAGGTTTCCTGTTCTCCAGACCAGTGTCAAG----------------------TGAGGGGACCACAGT-- s danRer1.chrNA 208247098 118 + 390413307 ---GGCCTC-------TGACTCCAGCAAG--CTACCCAGTTGTCCACCTCTCTCCCTGGACTTGCAGTATTGGCCCCAGGG-TTGC---CTTCTTGCCCTCCA-------CTTAGGGGTCTCTGACCCCAGCAAG-----------CTACCC--- a score=-15761.0 s hg17.chr7_random 643218 227 + 778964 AGGCCCCCTCCTCCCCCAG----------CCA---CTGGCCCCACCTGGACTAGGTTCCCCTCTGCCCCTGCCACCCCCAGTCTCTGGCCCCA----------------------------CCTGGACT----------------AGGTTCCCCTC-------TCCCCACCC---CCA---GTCTCTGGCCCCACCTGGACT----AAGTTC-----------CCCTC--------TCCCCACCCCCAGCCACTGGCCCCACCTGGACTAAGTTCCCCTCCCCTCC-----GAGCCACTGGCCCCACCTGTCCA-----GG-TCCCTCCAG s canFam1.chrUn 89312225 202 - 91062872 -AGGCCTGTCCTGTTCCA------------CA---TGGGGAGC-CCTGGACTA---TCTCCCTGGCTCC-----------ATACTCGGTCCCA----------------------------CCTGG-CT----------------AGGCTCCCCAG-------GCCCCTCCCA-GCCA---GTGGGTG-------CTGGGCT----GGGAGCCGTGAGCACAGCCCTC--------TCCTGCCCTGTGG----TGGCCAGACCTCAAGCA-----CCCAACCTTCC--------TTACAGGGTCCCCCTTTCCA-----GG-TGCTCCCAG s fr1.chrUn 315438100 238 + 349519338 -AGGCTCCTCCCAGCCTAG---GCTCCTCCCAGGTTAAGCTCCTTCCAGGCTAGGCTTCTCCCAGGTTAGGCCCCTCCCAGGTTCAGGCTCCT----------------------------CCCAGGCT----------------AGGCTCCTCCCAGGTTATGCTCCTCCCAGGCTA---------GGCTCCTCCCAGGCT----AGGCCC-----------CTCCCAGGCGAGGCCCCTCCCAGGCG----AGGCTCCTCCCAGGCTA-------GGCTCCTCC-----CAGGCGAGGCTCCTCCCAGGCTA-----GGCTCCTTCCAG s danRer1.chrNA 208247216 289 + 390413307 AGGGGTCCACCTCTCTCAATGGACTAGCACTA---TAGGTTCC---------AGGTTGCCCCCTGGCCCTCCACCTAGGGGCCTCTGACCCCAGCAAGCTACCCAGGGGTCCACCTCTCTCCCTGGACTTGCAGTAAAAGCCCCAGGGTTGCCCTC-------TTGCCTCCAC--CTAGGGGCCTCTGACCCCTAGCAAGCTACCCAGGGGT-----------CCTCC--------TCTCTCCCTATACTTGCAGAATAGGCCCCAAGGT-GTCCCCTGGCCCTCCAACTAGAGCCTCTGACTCCAGCAAGCTACCCAGGG-TGTCACCTC a score=-13713.0 s hg17.chr7_random 643445 132 + 778964 -CCTGC-AGGCAC----CGGGCTGGGCTCCTCTGGAT-GTGTGGTGCTCCTGCCCACCCAGCCCCTAAGCCTCT-------------GCTCCCAGCTCAGCCT---CTGCT--------GCCTGGGAGGAATCCTGGCCTGTGGCTTAC------CCTGGTTG------------CCCCCC s canFam1.chrUn 89313292 137 - 91062872 -CCTGC-AGGT------CACGTTAGGCTTCCCTGTGTCACATGGT-CTGCCACAGTGCTGGTCCCTAGGGC-----------------CTCCCTGCCCGGCCCTCACTGCT--------GCTC-------ATCCTGGCC---AGCCCACATACAGCCCTGTTGGGGCTGGGGTGTCTCTGC s fr1.chrUn 315438338 126 + 349519338 ----GCTAGGCTCCTCTCAGGCTAGGCTCCTCCCAGG-CTATG---CTCCTCCCAGGCTAGGCCC-----------------------CTCCCAGGCGAGGCT---CCTCCCAGGCTAGGCTC-------CTCCCAGGCTA-GGCTCCT------CCCAGGTTAGGCT-------CCTCCC s danRer1.chrNA 208247505 140 + 390413307 TCTCCCTGGACTTG---CAGTATAGGCCCCA-------GGGTG-----CCCCCTGGCCCTGCACCTAAGGGCCTCTGACTCCAGCAAGCTACCCAGTTGTCCA---CCTCT--------CTCC--CTGGACTTGCAGTATA-GGCCCAAGGGTTGCCTTCTTG------------CCCTCC a score=-2517.0 s hg17.chr7_random 643577 32 + 778964 AGGC--------------CCAGCTGGAGCCGCCTCAGCCCT---------GGGGT s canFam1.chrUn 89313429 55 - 91062872 ATGCAGAGGAAGCAGCAGCCACGTGGAGGCCCTTCAGGGCTTCGGGTCACAGGGT s fr1.chrUn 315438464 21 + 349519338 AGGC-------------------TAGGCTCCTCCCAGGCT--------------- a score=-5882.0 s hg17.chr7_random 643609 23 + 778964 GGGGCCG-----TGGT----CGCAGAGGCCGG s canFam1.chrUn 89313484 32 - 91062872 AGGCCTGGGTGCTGGTGGGACATGGGGCATGG s galGal2.chr14 16398547 18 - 20603938 -------GGTGCTGTG-------AGGTGAGAG s fr1.chrUn 315438485 18 + 349519338 --------AGGCTCCT----CCCAGGTTAG-- a score=866.0 s hg17.chr7_random 643632 12 + 778964 TCCCCGC--TCACT s canFam1.chrUn 89313516 14 - 91062872 CCTCTGCATTCACC s galGal2.chr14 16398565 12 - 20603938 CAGCTGT--TCACC s fr1.chrUn 103199469 12 + 349519338 TCTCTGC--CTTCT a score=1102.0 s hg17.chr7_random 643644 16 + 778964 GTGC---CCCCGCCGTTGC s mm5.chr5 12830071 16 - 149219885 GTAT---TCTTGTCTTTGC s rn3.chr12 16192751 16 + 46649226 GTAC---TCTTACCTTTGC s canFam1.chrUn 89313530 16 - 91062872 GTGG---CTCTTGTTCTGC s galGal2.chr14 16398584 19 - 20603938 GTGCATTTCTTCTGTTCAC s fr1.chrUn 103199481 14 + 349519338 --GT---CCCCGCAGTGGT a score=208705.0 s hg17.chr7_random 643660 144 + 778964 AGAGGAAGCTGTCCCCGCTGTCTGCAAGACCAGGACGGTCATTTACGAGATTCCTCGGAGTCAGGTCGACCCCACGTCCGCCAACTTCCTGATCTGGCCCCCGTGCGTGGAGGTAAAACGCTGCACCGGCTGCTGCAACACGAG s mm5.chr5 12830087 144 - 149219885 AGAGGAAGCCATTCCTGCAGTTTGCAAGACCAGGACGGTCATTTACGAGATACCTCGGAGCCAGGTGGACCCCACATCGGCCAACTTCCTGATCTGGCCCCCATGTGTGGAGGTGAAGCGCTGCACTGGCTGTTGTAACACCAG s rn3.chr12 16192767 144 + 46649226 AGAGGAAGCCATTCCCGCAGTTTGCAAGACCAGGACGGTCATTTACGAGATACCTCGGAGCCAGGTGGACCCCACATCGGCCAACTTCTTGATCTGGCCCCCATGTGTGGAGGTGAAGCGCTGCACTGGCTGCTGTAACACCAG s canFam1.chrUn 89313546 144 - 91062872 AGAGGAGGCCATCCCCGCGGTCTGCAAGACCAGGACGGTCATTTATGAGATACCTCGGAGCCAGGTTGACCCCACGTCTGCCAACTTCCTGATCTGGCCCCCGTGCGTGGAGGTGAAGCGCTGTGCGGGCTGCTGTAACACCAG s galGal2.chr14 16398603 144 - 20603938 AGAGGAGGCCATCCCGGCTGTCTGCAAAACACGGACGGTGATATATGAGATACCTCGGAGTCAGATTGATCCCACCTCGGCCAACTTCCTGATATGGCCGCCGTGCGTGGAGGTGAAGCGCTGCACTGGCTGCTGCAACACCAG s fr1.chrUn 103199495 144 + 349519338 GGAAGAGGCCCTGCCGGCCATCTGTAAGGTGAGAACGACCATCTACGAGATCCCCAGGAGCCAGGTGGATCCCACCTCTGCCAACTTCATCATCTGGCCGCCCTGCGTGGAGGTGAAACGCTGCACAGGCTGCTGCAACACCAG s danRer1.chr22 5716690 144 - 32001892 AGAGGAGGCAGTGCCAGCCGTCTGTAAGACCCGTACGGTGATCTATGAGATCCCACGAAGTCAGGTGGATCCAACAGCCGCCAACTTCCTGATCTGGCCTCCGTGTGTGGAGGTGAGGCGATGCTCAGGCTGCTGCAACACCAG a score=619.0 s hg17.chr7_random 644115 37 + 778964 AAAAATTCTCCCAAAAAG-GTTTTTTACATTCCAGGGG s canFam1.chrUn 1738414 38 + 91062872 AAAAATGTGACCACAAAGCACTTTTCACGTGTATGGGT a score=5181.0 s hg17.chr7_random 644152 43 + 778964 ----GTTGGTGGGGGGTTTTTTTTTTTTTAATCTTGGATCCACAAAA s panTro1.chr6_random 631151 39 - 67355074 ----GTTGGTGG----TATTTTTTTTTTTAATTTTGGATCAACAAAA s canFam1.chrUn 1738452 42 + 91062872 TTTGTTTGGTGG-----GTTTTTCTTTTTCCTTTTGGTTCAAAGAAA a score=273.0 s hg17.chr7_random 644195 6 + 778964 AAGGAA s panTro1.chr6_random 631190 6 - 67355074 AAAGAA s canFam1.chrUn 1738494 3 + 91062872 AAA--- s galGal2.chr14 4193720 6 + 20603938 AAGAAA a score=5771.0 s hg17.chr7_random 644201 59 + 778964 ACATGGCGGGT--TTTCGGGTTTTAAAACGCGGTATTTTTTGGGTAAGCATTGCTATTTTC s canFam1.chrUn 1738497 58 + 91062872 ACATAGCAGGC--TCTCAGGTATACAAAACTGGTAATATT-AGATAAAAATACAAACTTCA s galGal2.chr14 4193726 61 + 20603938 ACATAGCAGGCTTTCTCAGGTATATAAAACTGTTAATTTTTAGATAAAAATACAAACTTCA a score=14237.0 s hg17.chr7_random 644260 290 + 778964 CCCTTACAAA--AAAAACAA----ACCCCACACCCACATTTTTTTTTTATCCGGTGT-----------AAGCACATTTTTTTTCCAAAA-TAAAAAA-ATTGGGTTTTGTTCCAAAC-CCGGCGGGCGGAGGGAGGGACCGCCCCCCCGGCCCCAGGGCACACCAACAACACAGACAGAAGCGGCAATGCTTTTCCCG------TGCCGGGTGGGAACACAGCATTT---------TAGGTGTGCCCTGCGGGAAACAAGTTGTCATTCAGCCCCAAACGG-----GTTTTGGGGCAGGTG-------------CCGCAGGGACGGCGTACGATTGGTTGACG s panTro1.chr6_random 631253 290 - 67355074 CCTTTACAAA--AAAA-CAA----ACCACACACACACACATTTCT----------GTTAATACACGTAAAGCACAATATCTTACCAAAAATAAAGAA-TTTGGGTTCTGT-CCAAACACTGGCAG-CAGAGGGAGTGACCGCCACCACGGCACCAGGGCACACCAACAACACAGACAGAAGCGGCAATGCATCTCATG------TGCCGCGTGGGAACACAGCATTC---------TAGGTGTGCACTGCGGGGAACAAGGTGTCACTCAGCCACAAATGG-----GCTCTGGGGCAGGTG-------------CCGCAGGGACGGCATACGATTGGTTGACG s canFam1.chrUn 1738555 178 + 91062872 CCTTTACAAAACAAAAACAAAAACACAACACACACACACATTTCT-------GTTGA--ATACATGTAAAGCGTAACATCTTACCAAAAATAAAGAA-TTTAGATTCTGT-CCAAAC------AG----------------------TGGCCCAGGGGCACCTC-------------GCTGCGGCGAG--------------------GAGTGGGAGC---------------------------------------------------------------------------GGCAGGC-----------------CCGGGACGG-ACTCGATTGGTTCACG s galGal2.chr14 4193787 301 + 20603938 CCTTTACAAA--------AA--------------CACATATTTCT-------GTTGA--ATACACATAAAGCATAACATTTTACCAAAAATAAAGAATTTTAGGTTTTGT-TCAAATATTTGCAG--------CAAGGTAGTTCCCATGCCACCATGACATTGT-ACAATGCAGATACAAGAACTTGTACATTTCACACAGCTCCAACATGTGAAATAAAAGTATCTGTATACTGATAAGAATG-ACAATTGCTAACACAATATCACTAGTAGGCAACTGGCATAAGTCTTAAAGGAAAAAAAAAAAGGGATTTTTGCATGGATATCCTATGATTTGTTTACG a score=3214.0 s hg17.chr7_random 644550 15 + 778964 ----------------------CATAGTTTTTTCAAA--- s panTro1.chr6_random 631543 15 - 67355074 ----------------------CATAGTTCTTTCAAA--- s rn3.chr12 30446243 15 - 46649226 ----------------------CATAGTTCTCTCAAA--- s canFam1.chrUn 1738733 15 + 91062872 ----------------------CATAGTTCTCTCGAA--- s galGal2.chr14 4194088 40 + 20603938 CACGTCTCTCTTCTCTTTCCTCTTTGTTTCTTTTTAGGTA a score=-114.0 s hg17.chr7_random 644565 1 + 778964 A s galGal2.chr14 4194128 1 + 20603938 C a score=0.0 s hg17.chr7_random 644565 1 + 778964 A a score=273.0 s hg17.chr7_random 644565 1 + 778964 A s panTro1.chr6_random 631558 1 - 67355074 A s mm5.chr5 136379733 1 + 149219885 A a score=91.0 s hg17.chr7_random 644565 1 + 778964 A s canFam1.chrUn 1738748 1 + 91062872 A a score=112201.0 s hg17.chr7_random 644566 203 + 778964 TGGCTTAAATT--AACAA-----ATAAAGCAGGGTAAGGGGGAAACCC--AAACCCAGAAACATTTAGGAAATGATGCATAGGTGGGTATACCATGTTTTTTTTAATACATTTCATTAGTTTGCATCTTGTTAGGAAAAA------TACCGTCGCAC----TTTCCTGACAGTTACAGCAGCC-----TGTGTGTTTTCGGTGTAAATTTCTTCCAAGGGATAATTa s panTro1.chr6_random 631559 201 - 67355074 TGGCTTAAATT--AACAA-----ATAAAGCAGGGTAAGGGAGAAACAC--AAAGCCAGAAACATTTAGGAAATGATGCATAGGTAGGTATACCATGTTTATTTTAATACATCTCATTAGTTTGCATCTTGCTAGGAAAAA------TACCGTCGCAC----TGTCCTGACAGTTACAGCAGCC-----TGTGTGTTATCGGTGTAAATGTCATCCAAGAGATaa--a s mm5.chr5 136379734 200 + 149219885 TGTCTTAAGCTAGAAGAA-----ACGTTAAAGGGGCAGAGGAACACAG--GAAGGCAGAGGCGCATCAGAAATAATGGATAGGTAGGTATATCATGTTTATTTTAATACACCTCATTAGTTTG------GCTAGGAAAAA---AATAACCGTCTCGC----TGTCCCAAC--TTACAGCAGCC--TCGTGCGTGTTATCGACGAAAATGTCATCCAAGAGATTT--- s rn3.chr12 30446258 178 - 46649226 TGACCTAAGCT--AGAAG-----ATGTTAAAGG------------------AAGGCAGAGGCGCATCGGAAATGATGTATAGGTAGGTA-------TTTATTTTAATACACCTCATTAGTTTG------GCTAGGAAAAAAAAAATAACCGTCTCAC----TGTCCCAAC--TTACAGCAGCC--TCGTGCATGTTATCAACGAAAATGTCATCCAAGAGATTT--- s canFam1.chrUn 1738749 203 + 91062872 TGGCTTAAATT--AAAAAGTAAGATAAAATGGGGCAGGGGAGAAACACGTAAAGCCAGAAACATTTAGGAAGTGATGCATAGGTGGATATACCATGTTTATTTTAATACATCTCA----TTTGCATCCTGCGAGGGGAAA------TACGGTCCCAC----TGTCCTGAC--TTACAGCAGCC-----TG-GTGTTATCGGTGTAAATGTCATCCAAGAGATAATTa s galGal2.chr14 4194129 197 + 20603938 TGCTTTAAATT------------ACGGGGGAGGTT----GGGGAACAT--AAACCAAGAAACGTCTAGAAAATTATGCATAGG----TATACCACTTTTATTTTAATACATCTCATTAGTTTGCATCCCACTAGGAGAAA------TACCATAATGTTTTGTGTTCTTATTGTTATACCAGTCTTTTATATGTGTTATTGGC--AAATGTAGTCCAAGAGATAATAA a score=17014.0 s hg17.chr7_random 644769 22 + 778964 aaaaaaaaaaaaaaaaaaaaaa s panTro1.chr6_random 631760 22 - 67355074 aaaaaaaaaaaaaaaaaaaaaa s mm5.chr5 136379934 19 + 149219885 ---AAAAAAAAAAAAAAAAAAA s rn3.chr12 30446436 20 - 46649226 --AAAAAAAAAAAAAAAAAAAG s canFam1.chrUn 1738952 22 + 91062872 aaaaaaaaaaaaaaaaaaaaaa a score=44942.0 s hg17.chr7_random 644791 48 + 778964 GC----TAGCCAAAGAGTAAAAAGGA-AAGCTTAATAATCACTTTATGGTGTa s panTro1.chr6_random 631782 52 - 67355074 GCAAGCTAGCCAAAGAGTAAAAAGGA-AAGCTTAATAATCACTTTATGGTGTa s mm5.chr5 136379953 46 + 149219885 GC----TAGGCAGAGAATAAAAAGGAGAAGCT---TACTCACTTCATGGTGTA s rn3.chr12 30446456 46 - 46649226 GC----TAGGCAGAGAATAAAAAGGAGAAGCT---CAATTACTTCATGGTGTA s canFam1.chrUn 1738974 48 + 91062872 GC----TAGCCAAAGAGTAAAAAGGA-AAGCTTAATAATCACTTTATGGTGTA s galGal2.chr14 4194329 47 + 20603938 GC----TAGGCAAAGAGTAAAAAGA--AAACTTAATAATCACTTTATGGTGTa a score=431.0 s hg17.chr7_random 644839 56 + 778964 aaaaaaaaaaaaa-aaaaccaaaaaaaaaaaaaacaaaacaa--aaacaaaaaaaaaaa s panTro1.chr6_random 631834 49 - 67355074 aaaaaaaaaaaaacaaaac----aaaaacaaaaacaaaa-----aaacaaaacaaaaa- s mm5.chr5 136379999 46 + 149219885 AAAAAAGAGAGAGAAAGAA----GGAAAGGAAAACGAAA---------ATAAAGAAATT s rn3.chr12 30446502 55 - 46649226 AAAAAATAAAAGGAAAGGA----AAAAAAAAAAAAGAAAAAGATAAGAAAAAAGAAATT s canFam1.chrUn 1739022 12 + 91062872 AAAAAAAAAAA-----------------------------------------------T a score=59004.0 s hg17.chr7_random 644895 313 + 778964 CCACTTAAGGCTCTCAGGAAGGTTT-------CTGTATGGGCTT---AAATACTAC--AGCGAGGAGGTGTGGTTTCTAAA-GTTCGCGTGGCGGTT-----TCCAAGACATTCCTGCTTCCTGCGGGCCCCT-------GCAGAGCCCAC---CAGCACCCCTCTGGAGTCGTTCCCAAAGCAGGCTCT--GCATCCTCGGCAAAAAAGCACCTGTGACCACCCGGACAGAAATCCAGTCTGCTGA-----------GACCTCT-GCACTTCCATCCCACGGGGCGACCCT--------CCATCTCA----TC--GAGTTT---------AGATATTTTTGTG-----------AGTCCGTTTTGTTT-TTGTCATTTGTG--------------------GTTTTGTT s panTro1.chr6_random 631883 313 - 67355074 cCACTTAAGGCTCTCAGGAAGGTTT-------CTGTATGGGCTT---AAATACTAC--AGCGAGGAGGTGTGGTTTCTAAA-GTTCGCGTGGCGGTT-----TCCAAAACATTCCTGCTTCCCGCGGGCCCCT-------GCAGAGCCCAC---CAGCACCCCTCTGGAGTCGTTCCCAAAGCAGGCTCT--GCATCCTCGGCAAAAAAGCACCTGTGACCACCCGGACAGAAATCCAGTCTGCTGA-----------GACCTCT-GCACTTCCATCCCACGGGGCGACCCT--------CCATCTCA----TC--GAGTTT---------AGATATTTTTGTG-----------AGTCCGTTTTGTTT-TTGTCATTTGTG--------------------GTTTTGTT s mm5.chr5 136380045 335 + 149219885 CCACGTAAGGCCATCAGGAAGGTCC------------TAGGC-------AGACTCA--AGCGAGGTG--GTGGCTTCCAGG-----CCGTGGGCATC-----TCCCA------CCTGTTC------AGTTCCC-------ACGGAGCTGGCAGGCAGCATCCC----------------AGGCGGGCTCCAGGCGTCCTTGGC-GAAAAGCACCTGTGCCCA--CGGGCAG-AATCCAGGGTGGTGGCCAACATCAGCCACCTCTCGAGGGTCAGTCCTGCAGGGCGGCCCTTCCGTCGCCCACTTCAGTCTTT--TTGTTTCTTCTGGTGGGGTTTTTTTTTGTTGTTGGGTGTGGTTTGGTTTGTTT-TTGTTTTTTTTGTTTTTTTGTTTTTAATTTTTTTTTTGTT s rn3.chr12 30446557 287 - 46649226 CCACGTAAGGCCATCAGGAAGTTCC------------CAGGC-------AGACTCA--GTCCAGGCG--GTGGCTTCCAGG----CCCGCGGGCTTC-----TCCCA------TTCGTTC------AGTTCCTGTACCTAGTAGAGCTGGCAGGTAGCATTCT---------------------GG------GCGTCCTTGGC-GAAAAGCACCTGTGCCCA--CGGGCAG-AATCCAGGGTGGTGGCCAACATCAGCCACCACTCGAGGGTCAGTCCTGCAGGGCGGCCCTTCTGTTGCCCGCTTCA----GT--CTTTTT---------TTGT-TTCTTCTG-----------GTGGGGTTTTTTTG-TTGTTGGGTGTG--------------------GTTTTGTT s canFam1.chrUn 1739034 305 + 91062872 CCACTTAAGGCTCTCGGGAAGGTTT-------CTGTATAGACTC---AAACACTAC--GGCAAGGAGATGT-GTTTCTAAG---TCCCGTGGCGGT------TCTGAGACATCCCTGGCTCCCACGTGCCCC--------GCAGGGCCCTC----GGCACCCGCCCGGAGTCCTCCAGAAAGCAGGTTCT--GTGTCCCTGGC--TGAAGCACCTGTGAACC--TGGACAGAAATCCGGTCCGCCGA-----------GGCACGT--CGCTTCCATCCCACAGGGGTGTCCT--------CCATCCCG----ACAACTGTGT---------AGATATTTTTGTG-----------AGTCAGTTTTGTTTGTCATGTTTTGTG--------------------GTTCTGTT s galGal2.chr14 4194396 283 + 20603938 CCACTTAAGGCTCCCCAGAAGGTTTTTTTTTTTTGTATAGACTTTTAAAACACCACCAAGCAAGGATGTATTGTTCTATAGTGTTTGTGTGGCATTTGATCATTTCATACATTCCTGCTTTTTTTGTGC-----------CTGAAGTCCAT---CAGCGTCCATCCATCTTCATCAAGAACGCAGGCACA----TTTCTTGAC-GTAAAGCACCGTTGACTGCTCTGACAGAAATCCA-----------------------CTAT-----------------------------------TCACTCAG----AT-----TTT---------TGTCATGTTTTTG-----------GGTACTTTTGGTAT-CCTCCATTCATT--------------------CATTCATT a score=1684.0 s hg17.chr7_random 645208 29 + 778964 T----------------------tctctctctcttt-------------------------------------------ctctctctctctTTT s panTro1.chr6_random 632196 28 - 67355074 T----------------------tctctctctctct-------------------------------------------ctctctctctctTT- s mm5.chr5 136380380 38 + 149219885 T----------------------TTTTTTTCTTTTTTGT---------------------------------GGTTTTGTTTTCGCTCTCTGT- s rn3.chr12 30446844 71 - 46649226 T----------------------TTTTTTTTTCTTTTTTAATTTTTTTGTTTTTTTTTTTTTTCTTTTTTGTGGTTTTGTTTTCGCTCTCTGT- s canFam1.chrUn 1739339 50 + 91062872 TGCTCACGctctctctcgctctctcgctctctctct-------------------------------------------ctctccctctTTTT- a score=241272.0 s hg17.chr7_random 645237 264 + 778964 TGACAAGGAAGC-TTCTTACTGCTTCACCGAGTGCTACAATACTTGCTTTGATGTCACATTAAACAAATGTGCACTGTCTCTTTGTTCTC-CCGAGTGTTCTCGG-ACACAGTTTTT--------------CACGGAGGAGAACAAAGACCGCACAC----TGGCAATAAAGCACCGTACATAGTAGGTTCAGGAATGTAACACGCCATGTACATCCATGTCCCAGGAAAGGGCTG------CGGCTCATCCTCACCTCACATCTGCAGG-GAGAAGGGAAAGACAGACACT s panTro1.chr6_random 632224 263 - 67355074 -GACAAGGAAGC-TTCTTACTGCTTCACCGAGTGCTACAATACTTGCTTTGATGTCACATTAAACAAATGTGCACTGTCTCTTTGTTCTC-CCGAGTGTTCTCGG-ACACAGTTTTT--------------CACGGAGGAGAACAAAGACCGCACAC----TGGCAATAAAGCACCGTACATAGTAGGTTCAGGAATGTAACACGCCATGTACATCCATGTCCCAGGAAAGGGCTG------CGGCTCATCCTCACCTCACATCTGCAGG-GAGAAGGGAAAGACAGACACT s mm5.chr5 136380418 256 + 149219885 -GACAAGGAAGCTTTCTCACTGTCTCTCTGAGTGCTACAGTACTTGCTTTGATGTCACACTGAACAAACGGACACTGTCTCTT-------------TGTCCTCGG-ACACAGTTTTT--------------CACGGAGGAGAACAAAGACCGCACGCACATTGGCAATGAAGCACCATACATAGTATGTTCAGGAATGTCACACGCCACGCACATCCGTGTCCCGGGAGAGGGCGG-----CCGGCTCAT-CTCACCTCACATCTGTGGG-AAGGCAGGAAGAGTTGAGGCT s rn3.chr12 30446915 256 - 46649226 -GACAAGGAAGCTTTCTCACTGTCTCTCCGAGTGCTACAGTACTTGCTTTGATGTCACACTGAACAAACGGACACTGTCTCTT-------------TGTCCTCGG-ACACAGTTTTT--------------CACGGAGGAGAACAAAGACTGCACGCACATTGGCAATGAAGCACCATACATAGTATGTTCAGGAATGTCACACGCCACGTACATCCGTGTCCCGGGAGAGGGCAG-----CCAGCTCAT-CTCACCTCACATCTGTGGG-AAGGCAGGAAGAGTTGAAGCT s canFam1.chrUn 1739389 263 + 91062872 -GACAAGGAAGC-TTCTTATTGTTTCACCGAGTGCTACAATACTTGCTTTGATGTCACATTAAACAAATGTATACTGTCTCTTTGTTCTC-CCGAGTGCGCATGG-AGACAGTTTTT--------------CACGGAGGAGAACAAAGATCGCACGC----TGGCAATG-AGCACCGTACGTAGTAGGTTCAGGAATGTAACACGCCATGTACATCCGTGTCCCGGAGAAGGGCTG-----CTGGCTTGTCCTCACCTCACATCTGCGGG-GAGAGCGGAGAGACAGACACT s galGal2.chr14 4194723 286 + 20603938 GGACAGGGAAGC-TTCCTATTGTTTCACAGAGTGCTACAATACTTGCTTTGATGTCACATTAAACAAATGTACATTGTCTCTTTGTTCTCATTAAGTGTTCTTTTCAGCCAGTTTTTTTTTTTTTTTTTTCCACACAGGAGAACAAATAAAGTATAC----AGTCAATA-AGCACCATACATAGTAGGTTCAGGAATGTAACAAACCATGTACATCCATGTCCCAGAGAGAAGTTTTTTTTCTAGCTTATTTTCACCTTACATCTGCAGGAGAGAAAAAAGATACAATAACT a score=-12065.0 s hg17.chr7_random 645501 108 + 778964 GAGACCACCGAC------CAAGTGAACCACCCAGCACACACATGGCTGCATAGGAGGAAAACAGGGTGAAAACA-TTTAACCCAATCAGGGG-----CACACAGGGA----------TTTCAAGTTTTCA- s panTro1.chr6_random 632487 108 - 67355074 GAGACCACCGAC------CAAGTGAACCACCCAGCACACACATCGCTGCATAGGAGGAAAACAGGGTGAAAACATTTTTACCC-ATCAAGGG-----CACACAGGGA----------TTTCAAGTTTTCA- s mm5.chr5 136380674 99 + 149219885 ATGACCACAGATAGAAAACAGCAGGGCCACTTAGCCCCAACTTGTCT---TAAGATACGAAGTTGATATACGTAATTTAA------------------AAAAAAAAA----------AATCAAAATTTCC- s rn3.chr12 30447171 67 - 46649226 ATGACCACAGAT---------------------------ACAGGGCCGCTT-----GACAACTT-------ATGTCTTAATACATGCAGGTG--------ATATGTA----------ATTTAAA------- s canFam1.chrUn 1739652 108 + 91062872 GAGGCGG--GGC-------------------CGGCACACGCGCTGCCACATGGACGGCAGCCACGATG-ACACG-CTTCACCCCATCAGGGTACACACTCACACGCAGCGTGACACGTCTCAGATTTGTTG a score=-3679.0 s hg17.chr7_random 645609 56 + 778964 -AGAAATTTCCAGAATCACATTTGCCACATT-------GGCCATGTTGCAGTACCCT-----GACAGGA s mm5.chr5 136380773 30 + 149219885 -ACAGTTT-----AATCAAATCTTCCCAATT---------------------------------TAAGA s rn3.chr12 30447239 54 - 46649226 -AAAAA-------AATCAAATTTTCCACAGT-------TTAAGTGTAATCAAATCTTCCCAATGTAAGA s canFam1.chrUn 1739760 63 + 91062872 TAGCGTTTTTCA-AATCAAATATGCCTCAGTACATCCTGAGCTTTCTGTAACAACCT-----GAGCAGA a score=56874.0 s hg17.chr7_random 645665 153 + 778964 ATTGGGATtaggctcacagcatctcacagaacatgtctagagaccaagccccat-tctcccattgtacagatgggggaaactgaggccaagaatggCTCA---TTtgcccttctctctgccttcctttcttccagc-------------ctagggcttagatgtgatttc s panTro1.chr6_random 632714 153 - 67355074 ATTGGGATTAGGCTCACAGCATCTCACAGAACATGTCtagagaccaagccccat-tctcccattgtacagatgggggaaactgaggccaagaatggtTCA---TTtgcccttctctctgccttcctttcttccagt-------------ctagggcttagatgtgatttc s mm5.chr5 136380803 134 + 149219885 ACTGGTACTAGACTGGCTGCATTTCATAGAAGA---------------ACCCAT-GCTCCCATTGCACAGAT-GGAGAAACTGAGGCATAGAAAGTTCTT---TTTGTCCTCCCCCCTATGTTTCTTTCTTCCAGC-------------CTAAGGCCTGTAC---CTTGT s rn3.chr12 30447293 134 - 46649226 ACTGGTACTAGGCTAGCTGCATTTCATAGAAGA---------------ACCCATGGCTCCCATTGCACAGAT-GGAGAAAATGAGGCATGGAAAGTTCCT---TTCGGCCTTCCCGCTATCTTTCTTTCTTCTAGC-------------CTAAGGCCTGTAC----TTGT s canFam1.chrUn 1739823 167 + 91062872 ACGGAGACtaggttcttaggatcccacagaacg-ttccttagagcaagccccat-tct-ccagtgtacagatgagggaaactgaggcccagcatggtTCTTTCTTTGCCTTTTTCCCCACATTCTTTTTTTTTAACACCCCCGCCCCAGCAGAGGACTGGATGTAATTTC a score=10868.0 s hg17.chr7_random 645818 136 + 778964 tggagctctggcagccaccttgggccatgagacaaccctgaggatggaggccaccagccagacagaa-----gagtctgCACCCAGGCAGACCTATG---------------------------CTGATCGTTTAAGAACAATTCTTCCACATCCCATGTGGCCTCTC s panTro1.chr6_random 632867 136 - 67355074 tggagctctggcagccaccttgggccatgagacaaccctgaggatggaggccaccagccagacagaa-----gagtctgCACCTAGGCAGACCTACG---------------------------CTGATCGTTTAAGAACAATTCTTCCGCATCCCATGTGGCCTCTC s mm5.chr5 136380937 105 + 149219885 TGGAGGT-TGGCAG----TTTGGGCCATGAAGTATC----AGAACAGATACCACCAGCC--------------ACCCTGCAT----GTGGCTCTCTG------------------------TGACTAATC-----AGAGCAATG-------ATTTTGTGTGGCTGTTC s rn3.chr12 30447427 150 - 46649226 GGGAGGT-TGGCAG----TTCGGGCCATGAAGTGTC---------AGGGAGAACCAGCCACCCTGTATGTGGGTCTCTGTGACTAATCAGAGCAATGATTTTTTTTGTGGCTATTACGGTGCTGGTGATCAAATACGAGCTATCATCACA-AAACTAT---ACCTCCC a score=929.0 s hg17.chr7_random 645954 6 + 778964 CATCGC s panTro1.chr6_random 633003 6 - 67355074 CATCGC s mm5.chr5 136381042 6 + 149219885 TGGTGC s rn3.chr12 30447577 6 - 46649226 AGTTCC s canFam1.chrUn 1740238 6 + 91062872 CACTGC a score=18071.0 s hg17.chr7_random 645960 142 + 778964 ACACT---CCAACACGTGGGCTGCCT-ATAGGCTGAACATGAG-TACCAGCCAGGCATGGG--ACAACAGGAGTGCCAGCC---TCTCACC--ATGGGGT---CTGTCACCAGCAGGCCCATGGAGGCCAGAGCCTAA-CGCT-CTGTAGAAATGGGAC s panTro1.chr6_random 633009 143 - 67355074 ACACT---CCAACACGTGGGCTGCCT-ATAGGCTGAACATGAG-TACCAGCCAGGCATGGG--ACAACAGGAGTGCCAGCC---TCTCACC--ATGGGGT---CTGTCACCAGCAGGCCCATGGAGGCCAGAGCCTAAACGCT-CTGTAGAAATGGGAC s rn3.chr12 30447583 133 - 46649226 ATACTGAACCAACA-GTGCCTTCCTTCACAGCCTGGAGACAGGCTGCCAGCTGGACACGGGCAGTCGCAGAAACACCTGCC---TCTCACTTGAAGGGGTTCCCTGTCAGCCGTGGGCCCAT------CAGAGC----------------ACATGGGAC s canFam1.chrUn 1740244 134 + 91062872 TTATC---CCAGCACCTGTACCACCC-ACA--------------AGCCAGC-AGGCCTGGA--GTGGCAGGGACGCTCCTCAGTTCTCACT---TGGGGT-CTCTGTCATCGGCTGGCCTGTGAAGGCCAGAGCCCAATCATTGGTGGGCACAGTGGAT a score=100.0 s hg17.chr7_random 646102 1 + 778964 C s panTro1.chr6_random 633152 1 - 67355074 C a score=631.0 s hg17.chr7_random 646102 16 + 778964 CCACAGGCAGGCACAA s canFam1.chrUn 1740378 16 + 91062872 GCACAAGATGACACAA a score=5354.0 s hg17.chr7_random 646103 15 + 778964 CACAGGCAGGCACAA s panTro1.chr6_random 633153 15 - 67355074 CACAGGCAGGCACAA s mm5.chr5 136381123 15 + 149219885 CACAGGCAGTCACGG s canFam1.chrUn 1740379 15 + 91062872 CACAAGATGACACAA a score=120492.0 s hg17.chr7_random 646118 1037 + 778964 -AACCACCCACCAGGCCA----------CACTTTCAGCAAA---CAAAGCCAAGGCTGACCAACAGTCCTGGACTGCTTCAAAGACCCGCCCAAGTGGACAATTTCCTCCCAAG--AGGCTCCTCATGAA-TGGACCTCACCCGCAGGC---CCAAGTCCCACATTGCAAACAGGAGCCAGGGTTCTCAGACACCCTATCTCTGAGATCCTCCTCTCTTCTAAAGAAACTATTTGTTTTGGCCACCATGGAGTCCCACGT-GCCAGGAGGGGGAACCAGGCCAGACAGGGCTCCAACTTTCCCAAGCCAGACGGGCCAATGCCAAGGACCAGGAAGGCTTGAAACTGCCTCCTCCGTGATGATGGCGGCTGCCCAGGTCCCACCTCCATCTGGGAAGCGACATGTCTTGCTAGGAGacatttcccaagctcccttgcagtggagggatggcagctgagaaaaacacaaaagtcactgggtgggatttccaggatagctctctaagggtgttattttgcccttcccccccccccccgctcactccttcttccagcctggagcacagatgtggtttctggagctttagcagccaccttgggccatga-ggcaa--ctgcagatggatgccactag----ccagacagaaggcggacactgatgatacctcaagactaccctccctgctctgcaatcccacccttagatgaaagtcatgaagctcgatcttatctcaatc-cctgtgctgtctgg--tgttactagcagccaaatgcaatTTCCAACACAGTAGCCAACAGCCCTGCACGTTTATAAAGGATTTCCA-----GATATATTCAGCCTCCAACAG--TCCTTATCTGtaatctcagttaagcctcagttttttcatctgtcaaatggggtgggtgAT---CCCAGAGTGGCC-------AGGCGC-TC-----AGAGCTGCCCCACCGCTGCTCAGGTCGCCCAAC--CTGTTCCATTCATGTGCAATGCTCCTGCA--TCCCCAATCAACGACAAAGAGAAGGACAAAGCTGGAGGCAGGCTCCCAAGCGGGAGTGAGCCACGGGCCAGGGCGTTCTGC s panTro1.chr6_random 633168 1035 - 67355074 -AACCACCCACCACGCCA----------CACTTTCAGCAAA---CAAAGCCAAGGCTGACCGACAGTCCTGGACTGCTTCAAAGACCCGCCCAAGCGGACAATTTCCTCCCAAG--AGGCTCCTCATGAA-TGGACCTCACCCGCAGAC---CCAAGTCCCACATTGCAAACAGGAGCCAGGGTTCTCAGACACCCTATCTCTGAGATCCTCCTCTCTTCTAAAGAAACTATTTGTTTTGGCCGCCATGGAGTCCCAAGT-GCCAGGAGGGGGAACCAGGCCAGACAGGGCTCCAACTTTCCCAAGCCAGACGGGCCAATGCCAAGGACCAGGAAGGCTTGAAACTGCCTCCTCCGTGATGATGGCGGCTGCCCAGGTCCCACCTCCATCTGGGAAGTGACATGTCTTGCTAGGAGacatttcccaagctcccttgcagtggagggatggcagctgaggaaaacacaaaagtcactgggtgggatttccaggatagctctctaagggtgttattttgcccttcccccacccccg---tcactccttcttccagcctggagcacagatgtggtttctggagctttagcagccaccttgggccatga-ggcaa--ctgcagatggatgccactag----ccagacagaaggcggaccctgatgatacctcaagactaccctccctgctctgcaataccacccttagatgaaagtcatgaagctcgaccttatctcaatc-cctgtgctgtctggg-tgttactagcagccaaaTGCAATTTCCAACACAGTAGCCAACAGCCCTGCACGTTTATAAAGGATTTCCA-----GATATATTCAGCCTCCAACAG--TCCTTATCCGtaatctcagttaagcctcagtttttttatctgtcaaatggggTGGGTGAT---CCCAGAGTGGCC-------AGGCGC-TC-----AGAGCTGCCCCACCGCTGCTCAGGTCGCCCAAC--CTGTTCCATTCATGTGCAATGCTCCTGCA--TCCCCAATCAACGACAAAGAGAAGGACAAAGCTGGAGGCAGGCTCCCAAGCGGGAGTGAGCCACGGGCCAGGGCGTTCTGC s mm5.chr5 136381138 762 + 149219885 -AAACACCTGCCTCTCCCTTGAAGGGGTCCCTGTCAGCAG-----CAGTCCCTGTCAGAGCCACA---TGGAACAACCCCAAGGACCTGCCCAAGGAGACAAAT---GCCCAAG-------------------------ACAGGCATCC---CCAGGCACCCTCGTG----TGGGAGCCAGGGTTCTCAGACACCCTATCTCTGAGGAC--TCTCCTGCCCAGAATAACTGTTTGTCTTGGATGCCCCTAAGTCGCATGT-GCCAGGAGGAAGGGCTCAGCCAGACA-GGCTCCAGCCCT-CTGAGCCAGACAAGCTGACACTCAGGACAGG--------------------------------------------------------TCTGGGAAATGATATGCCCCACC----TACATTCCCTACACTTCC--------GGGGAAAAGCAGCC---------------ATCACAGGGTGGG-TTTGCAACA-AGCATTCCTAAGAGGCTCTACAGCCCTTCTTTACCTGCC----TGACTCTTCCACCC-----------------------CTGG------AGCAGCCTCCATGGGTCCTGGCGGTAA--TTTTAA--------------------GGACAGAA--------CCCACAGTACA-AAAGACCACCCCATCTGGT-------------CTTACACGGA--TCATTAACCTC-----TTCCTCCTTT-CCTGAGGTCACTGCT-GGTTACAAA-----AGATG-------------ACTGACTGACTGCCCTGGCCACTTA-----ACTCTTCA-----GATCCACTCAGCCTCCTCC----TCCTCCTCGGTAA--------ACGTCTCAGTCCTTCCGCCAGTCAG-------------------CGCAGTGGGC-------AGTCTC-TCCCCAGATAACTCCACCAGAGCCACCAGAAGCCCCCACCCACCCTTCCCGCCATGGG----GCACTCGGG--TGCCTGATCAACGACCAAGAGAAGGGCAAAGCTGTAG----------------------------------------CTGC s rn3.chr12 30447716 704 - 46649226 --------------------------------------------------------------------------AACCCTGCCGACCTGCCCAAGGAGACACAT---GCCCAAGACAGGC-------------------ATCCCCAGCC---ACA------CTCCTG----TGGGAGCCAGGGCTCTCAGACACCCTATCTCTGAGGAC--TCTCTTGCCCAGAATAACTGTTTGTCTTGGATGCCCCTAAGTCCCATGT-GCCAGGAGGAAGGGCTCAGCCAGACA-GGCTCCAGCCCT-CTGAGGCAGACAAGCTGACACTCAGGACAGG---------------------TCTGGGAAATGGCA-------------CACCCCCACCT-------------------------ACATTCCCCACACTTCC--------GGGGAAAAACA----------------GCATCATAGGGTGGG-TTTGGAACA-AGTATCCCTAAGAGACTCTACAGTCCTTCTCTACCTGACC---GGACTCTTGGATCC-----------------------CAG-------AGCAGCCACCGTGGGTCCTGAGGGTAA--TTTTAA--GGACAGAATCCA----CAGGGTCAAG---------------TACA-AAGGACTACCCATCCTGGT-------------CTTACACAGA--ACGTTAACCTC-----CACCTCCTTCTCCTGATGTTGCTACT-GGTTACAAA-----------------------AGCAGGTTAC-GCCCTGGCCACTTA-----GCTCTTCG-----GATCCACTCAACCTCCTCAAGCCTCAACATCTGTAA--------AAGCCTCAGTCCTTTCACTGGTCAG-TGCAGTGGGT-------------------------AGCCTC-CC--CAGGTAACTCCACCA---------GAAGCAACCA----CCCTTCCCGCCATGGG----GCATTAGGG--TGCCTAATCAACGACCAAGAGAAGGGCAAAGCTGTAG-------------CTGCGAGGAGACCCGGCCCA----------- s canFam1.chrUn 1740394 866 + 91062872 AAACCACCC-CCAAGTTA----------CACTCTGGGGGAAAACTACACCCTGGGCAAGAAGTCATTGTGGGGCTGCTTCAGGAGCCCACCCACGAGGACCCTC--CTCCCCGG--------CTCCTGAACTGGGAGCTTCCTGCAGTCGCTCCA----------------CCAGCACCTGGGCTCTGAGACACC--ATCTCTAAGAAC-TTCTCCC-------ACAACCACCTGTCTGGGACGCCATGGGCTCACACACAGCCAGAGGCAAGGACCAGG----------------CTTT-CCAGAGCAGACAGGAC--TGCTGAGGTTGAG----------------------------GATTGAGGTTGCCCAAATCCCATTCCC--------------------TACAAGACTACACTGCCCAGGTCCTCTTGCCACCAAAGGATGGCC----AGGGTATCAGAGAAGTCACCAGGTGGG-----------ACTTTTCTAAGAGGGTTCTTTTGGCCCTCT------------------------TCCAACCTAGAGTGTACACGTGATTTGTGGAGCTTCAGCAGCCACACTGAGCCATGA-AGCAGATCTGCGGATAAACAGCACCAGTCCCTCACGTCGGAGAGGGTCCCTGATGATACCTGGAGGATGCCAAACCTGCT-------------CCTGAACAT---CTATCTACCTC------GCTTCAGCC-CTCATTGATTCCGGTGTGTCACCAGCAACCAAACACAGTTTCCAACACAGTAGCCAACAGCCCTGTACGTTTATAAAACGCTGTCAGACATGACCTGCTCGGTCTTCAAATG--CCGTTACCCATCATCCCCGT-GAGCCTCAGT-CTTTCATCTGTCCAATGGGACGGGGAACCTGCCCAAGGTGAGCCCAGGTAACGCGCATC-----AGAGCTACCCCACTGCTGTTCAGGAAGCTGAA---TCACTGCACTCACGGG----ATACCAGGGCCTCCCCCATCGATG--CAAGAGAC---CCAAGC-------------------------------CAGAGCGGGGACTCCGGA a score=110911.0 s hg17.chr7_random 647155 346 + 778964 GAGGCAGGAGCGGACGGG-----GAGCAAGGAGACCCAAG-CCCAG-CAGACACC---ATCAAG---GCCAATCAGGGCC---ACATC-----CCCGCCGCACCCGGCGAG------ACAGGAAGCGT---GATTT--------------GCTGGTGTGAT--CAGTCAGTTGCACCTCCCC-GC-CCTGCAGGA--------CTCAGTGTGTCCGGCAGACAG-TCCTACCTGGTT-GGCT--------------GCTTTAGGTGGGTTTTAACCTTTTTCTTTTCCGTTTTTTACCTGACTCCCTAGGCCTTCCTGTTAACAAAAGGGCA-GGGCGGTGAGTGGGCCGAGGG-ACGGCCGTCGGGGTGAAGAACTGAAGCAACAAATACCTACGGCATTTG-TTTATCTTTCCAGAAGA-- s panTro1.chr6_random 634203 348 - 67355074 GAGGCAGGAGCGGACGGG-----GAGCAAGGAGACCCAAG-CCCAG-CAGACACC---ATCAAG---GCCAATCAGGGCC---ACATC-----CCCGCCGCACCCGGCGAG------ACAGGAAGCGT---GATTT--------------GCTGGTATGAT--CAGTCAGTTGCACCTCCCCCGC-CCTGCAGGA--------CTCAGTGTGTCCGGCAGACAGGTCCTACCTGGTT-GGCT--------------GCTTTAGGTGGGTTTTAACCTTTTTCTTTTCCGTTTTTTACCTGACTCCCTAGGCCTTCCTGTTAACAAAAGGGCA-GGGCGGTGAGTGGGCCGACGG-ACGGCCGTCGGGGTGAAGAACTGAAGCAACAAATACCTACGGCATTTG-TTTATCTTTCCAGAAGA-- s mm5.chr5 136381900 304 + 149219885 AAGG-AGACCCGGCCG------------AGCAGTCCCAGA----AG-CACACAGA---ACCTTG--AGCCAATCAGGGCC--------------------CAC-----------------GGAAGCGG---GATTC--------------GCCTGTC---------TTGATTGTG--TCCCA-GC-CCTGTGCGAGGGAGT-CCCCAGCTCACCCGGCGGGCAGGGCCTACCTGGTC-GGCC--------------GCCTTAGGTGGGTTTTAACCTTTTCCTTTTCCGCTTTTTACCTGATTCCCTACGCCTTCCTGTCAAGGAAAGGGCAGGGGAGGTGAGT-GGCCTCCGG-AGGGCC--TGGGGTGGGAAGCCACAGTAATAAATACTGAAGG----TG-TTTATCTTTC--AGAGA-- s rn3.chr12 30448420 289 - 46649226 ---GCAGTCCCGGAAG--------------------CACA-----------CAGA---ACCTTG--AGCCAATCAGGGCC--------------------CAT----------------GGGAAGCTG---GATTC--------------GCTGGT----------CTGATTGTG--TCCCA-GC-ACTGCGAGG--GAGTCCCCCAGCTCACCCAGCGGGCAGGGCCTACCTGGTCGGGCC--------------GCCTTAGGTGGGTTTTAACCTTTTTCTTTTCCGCTTTTTACCTGATTCCCTACGCCTTCCTGTCAAGGAAAGGGCAGGGAAGGTGAGT-GGCCTCCGG-AGGGCC--TGGAGTGGGAAGCCACAGCCATAAATACTGAAGG----TGTTTTATCTTTC--AGAAC-- s canFam1.chrUn 1741260 357 + 91062872 GCGGAAGGGGGAGCCGGGGACACGAGCGAGCAGACCCACAGCCCAGCCAGACACCGGAAGCTTGCAGGCCGATCAGGGCCGATGAATCAGGGGCGAGCCGCGAGCCGCGAGCCGGCCACGGGAGG------GATTG--------------GCC-ACGTGAT--CAGTCGG-TGCACCTCCCA----CCCGCAGGA-------CCGCGGCACGTTC-GCAGTCAGCTCCTACCTGGTC-GGCC--------------GCGTTAGGTGGGTTTTAACCTTTTTCTTTTCCGTTTTTTACCTGACTCCCTACGCCTTCCTGTTAACAGAAGGGCAGGGAGGGTGAGCGGGCCTA----AGGGTT--AGGGCTGCGGACCTGAGGCAATAAATAGCTGAGG----TG-TTTGTCTTTC--TGGAA-- s galGal2.chr14 4195988 376 + 20603938 GATGCTGATGGTGATGTG-----GAGCTTAAAGGAAAAAT-ACCAG-CAGGTAGA---ATTATCAAAGCCAATCAAATCT----------AATCTCTTTGCAG-CCTTGAG------GTAGCAAGTGTCAAGATTTTGAACAGTGATTAAGTTGAAGTGATGGTATTTGATTAAGTTTTCCA-GTACTTGTGCTA---------TTAGGGTGTTCAGCATATAGGTCCTACCTGAAT-ATCAAATAGTTCCAGTAGGTTTTATGTTGGTTTTAACTTTTTTCGTTTCCGTTTTTTACCTGATTCCCTAGGCCTTCCTGTTAACATAAGGGCAGGGCTGGTCAAAAGCCCCAAGGTAATGCA--TTTTGTTGAACACTGAAGTAATAAATACTCAAAC----CG-TTTACATTTC--AAAGAAA a score=4916.0 s hg17.chr7_random 647501 323 + 778964 GAAGGCCAG---CACCCTGGCACCGAGAAACTTCTGAGTCCCCTCATGCTCCCAGG--GCCCAGCCATAGCAGGGCACAGAAG-----CCATTCTGCTCCTGGGTGGAGTCCGCGTGGCGGGGTGAAGGA-GAGACCCCAGCCAGCCAGGGCAACTGCAGTCCTCGAACCTGCTCCTCCCGCCCACCCTGGCAGGAGGCCCTTCTGCAGATTCTTCTCAGCTCAGCCCCGCAGCCCACTAATGAATTGGGTGTCTTATGCACTCCCAGCCCCTCTCAGTGAGACCTGAATCTCCTCTCC-TGCCAGTGCCG-CAGCTTGGGCCACCCTCCCCACCG-------- s panTro1.chr6_random 634551 323 - 67355074 GAAGGCCAG---CACCCTGGCACAGAGAAACTTCTGAGTCCCCTCGTGCTCCCAGG--GCCCAGCCATAGCAGGGCACAGAAG-----CCATTCTGCTCCTGGGTGGAGTCCGCGTGGCGGGGTGAAGGA-GAGACCCCAGCCAGCCAGGGCAACTGCAGTCCTCGAACCTGCTCCTCCCGCCCACCCTGGCAGGAGGCCCTTCTGCAGATTCTTCTCAGCTCAGCCCCGCAGCCCACTAATGAGTTGGGTGTCTTATGCACTCCCAGCCCCTCTCAGTGAGACCTGAACCTCCTCTCC-TGCCAGTGCCG-CAGCTTGGGCCACCCTCCCCACCA-------- s mm5.chr5 136382204 265 + 149219885 GAAAGCCTGATCCACCCTGGTGCATAGACACTTCCGGGTCTATCTCTGCACCTGGGCTGCCTGAATGTTGGCATATACAGGTG--------------TGCTGGGCA-------------GGACTGAAGGGCAAGACCCTGGGCAGCAGGG-----TACAGCCCG-AATCCAGTGTCTACTGTTCCACCTGG-AGGTGGCAC--CTGCAGGCAGTTTCCCTGACTGTCACTCTGCAAGCTAGTG---TGGACAGCT--GGCAAATCCAGGCCTGCT------GACTTGTTT------------------------ACTCAAGCAACTTTTCCCATCG-------- s rn3.chr12 30448709 234 - 46649226 GAAAGCCCGATCCACCCTGGCGCCTGGACACTTCTGGGTCTATCTCTGCGTTTGGGCTGCCTGAATGCTGG--------------------------TGCTGTATAGGG-ATGCTGGTCGGGATGAAGGTAAAGACCCTGG---GCGAGGGCACTT----------AACCTTC----------------------AGGGTCTACTG--------TCCCATC--------------------TGGATGGGGTACCC--TGCAGGCACAGTTTCCCT------GAC---AGTTTCCTCTACGGGCCAGTGTAGACAGCTGGGAAATCCAGACCAATC--------- s canFam1.chrUn 1741617 205 + 91062872 GAAAACTCGATTAGCTTTGGCACAGAGACACTTCCTGG--------TGCCCTTGAGCCGGCCCGATGCAGCGGGTCACAGCACCTCTACCACGCTGCCTCGGGGCAAAGTCTGCCTGG------GACGGG--------------GTCGGG--------------------------------CCTCCCTGG------------------------------------------------------------GCCA--TGGGCTCCTGGTCACTCC----------------TACACCCC-GACCAGGGTGGGCACTTGGAGCGGCCACCCTAGTCGCTCCAGCT a score=7455.0 s hg17.chr7_random 647824 139 + 778964 GACACCTGCAGGTGTGGGATCCGTCTCCCCCGCAGGCATCTGGCCCGGGAGCAGGGCAACGAATCCTTCAACAGCAGC-CCAGATGCTCACAGCAGTAAGCGTTGCGCTCAAGGGGGCCACCTAACACCCCAAAAGCAAG s panTro1.chr6_random 634874 139 - 67355074 GACACCTGCAGGTGCGGGATCCGTCTCCCCCGCAGGCATCTGGCCCGGGAGCAGGGCAACGAATCCTTCAACAGCAGC-CCAGATGCTCACAGCAGTAAGCGTTGCGCTCAAGGGGGCCACCTAACACCCCAAAAGCAAG s rn3.chr12 30448943 89 - 46649226 --AACTTTTA----------CCATCGCTCTGTGACTGACTTGGCTCGGTC-CAATGCGACCGATCCCT------CATC-CCATAT--------------------CCCTCAGG-----------ACCCACGCGAAGCAAA s canFam1.chrUn 1741822 114 + 91062872 GACACCTGCAGGTG------CCTCGACCCCCACTAGCCCCCACCCCGGGGGCCCTGTGCCGGATTC----GCAGCGGCACCAGACGCTCC---------------TGCCCGCCGAGCCGAGCCTCTGCGTGGAGGGCAG- a score=100.0 s hg17.chr7_random 647963 1 + 778964 G s panTro1.chr6_random 635013 1 - 67355074 G a score=683.0 s hg17.chr7_random 647963 30 + 778964 GCTCTGAAGACCTGTTCTCCAACACCGATG s canFam1.chrUn 1741936 27 + 91062872 GCTCTGAGGACCCCT--TCCAACGACGAG- a score=3766.0 s hg17.chr7_random 647964 29 + 778964 CTCTGAAGACCTGTTCTCCAACACCGATG s panTro1.chr6_random 635014 29 - 67355074 CTCTAAAGACCTGTTCTCCAACACCGATG s mm5.chr5 136382518 25 + 149219885 CCCTCAGGACCCACAC----ACAGCAAAT s canFam1.chrUn 1741937 26 + 91062872 CTCTGAGGACCCCTTC--CAACGACGAG- a score=2989.0 s hg17.chr7_random 647993 15 + 778964 CCGACGAAGGC---AGCC s panTro1.chr6_random 635043 15 - 67355074 CCGATGAAGGC---AGCC s mm5.chr5 136382543 15 + 149219885 CAGACAGTGTT---GGCC s rn3.chr12 30449032 15 - 46649226 CAGACAGTGCT---CGCC s canFam1.chrUn 1741963 18 + 91062872 AGGACGAGGCCCAGGGCC a score=140865.0 s hg17.chr7_random 648008 153 + 778964 ACTC--ACCCGTGTCCTCTTCCCGATAATCCGGATTCAGGCTTGTGGTCGCGCAGGCGCACTCCAAATGCTCCTCTAACCTCACCTGGACTTCTTTTAATTTTGGCTTCTTCCTGACGTATTCCACCTTGGCCACCTGCCAGAGAGAACAGAGCC s panTro1.chr6_random 635058 153 - 67355074 ACTC--ACCCGTGTCCTCTTCCCGATAATCCGGATTCAGGCTGGTGGTCGCGCAGGTGCACTCCAAATGCTCCTCTAACCTCACCTGGACTTCTTTTAATTTTGGCTTCTTCCTGACGTATTCCACCTTGGCCACCTGCCAGAGAGAACAGAGCC s mm5.chr5 136382558 153 + 149219885 ACTC--ACCTGTCTCCTCCTCCCGATGGTCTGGGTTCAGGTTGGAGGTCGCACATGCACACTCCAGGTGTTCCTCTAACCTCACCTGGACCTCTTTCAATTTTGGCTTCTTCCTGACATACTCCACTTTGGCCACCTGCCGAGGAAACAAAAGCC s rn3.chr12 30449047 152 - 46649226 ACTC--ACCCGTCTCCTCCTCCCGATGGTCTGGGTTCAGGTTGGAGGTCGCGCATGCGCACTCCAGGTGCTCCTCTAACCTCACCTGGACCTCTTTCAATTTTGGCTTCTTCCTGACATACTCCACTTTGGCCACCTGCCGAGGA-AACAAAGCC s canFam1.chrUn 1741981 154 + 91062872 GCTCTTACCCGTCTCCTCCTCCCGGTGATCTGGGTTCAGGCCGCTGGTCGTGCATGTGCATTCCAGATGCTCCTCCAGCCGCACCTGCACTTCTTTTAACTTTGGCTTCTTCCTGATGTACTCCACCTTGGCCACCTGCCCGAGACAACAGGCC- s galGal2.chr14 4197730 153 + 20603938 ACAT--ACCAGTTTCTTCTTCTCTATAATCTGAATTAGTATTTGTTGATGTACAGGTGCATTCCATATGCTCTTCTAATCTCACCAGAACTTCTTTTAATTTTGGCTTTTTTCTAACATATTCCACTTTTGCCACCTATAAAATACGATGAGGTA a score=2023.0 s hg17.chr7_random 648161 31 + 778964 CGGCCATGA-ATGCCTGCATGGAGCTTCGGAC s panTro1.chr6_random 635211 31 - 67355074 CGGCCATGA-ATGCCTGCATGGAGCTTCGGAC s canFam1.chrUn 1742135 28 + 91062872 CCGCGGTGA-ACACCTCGGCCACGCCTCG--- s galGal2.chr14 4197883 31 + 20603938 -TGTACTGAGATACATTAACATAGTTCAGGAC a score=19909.0 s hg17.chr7_random 648192 152 + 778964 ATCACGACGTGCTGGGAGCCGGGGACAGGCTG------------------------AGAGGGAGGAGAGAGCAGCCTGACCCCTGACCTCCTCCCAGAAACACTACCTTGTGGTGGGGAGTGTAGCAGTACCAGGTGAAAAACCTACAAGCTGCAGTGCAGTTTTGTGTGTGTGTG s panTro1.chr6_random 635242 152 - 67355074 ATCACGACGTGCTGGGAGCCGGGGACAGGCTG------------------------AGAGGGAGGAGAGAGCAGCCTGACCCCTGACCTCCTCCCAGAAACACTACCTTGTGGTGGGGAGTGTAGGAGTACCAGGTGAAAAACCTACAAGCTGCAGTGCAGTTTTGTGTGTGTGTG s canFam1.chrUn 1742163 145 + 91062872 --CACGAGTCACCGGGAGCGGGGTACGTGCTGGGGTGCTTGGCCCCACCCGAGCCAGGAGGGCGACGTGGGCAGGCTGACCTCTGACCTCCTCCCAGCG---------------GAAAGGCAGAGGACTGCCAGGTGAAAAA--------------GGCACCTTCGGGCATTTGTG a score=81332.0 s hg17.chr7_random 648344 878 + 778964 ttttagttttttctgagtagggtctcaccctgtcacctaggccaatcatagcctctgcagcctcaagctcttgggctcaagtgatccttccacctcagcctcccacctgtaagcacaggccaccatgcccagctaattttaaatattttttttgtgtggaagagatgagatctcgctatgttgccgaggttgatgttgaactcctggactcaagtgatcctcctgcctcagcctcccaaagtgctggaacttcaagtgagagccgccgcgcctggTGTTGGAGCATGGTATTTAGCAGACTCATCCTATTTTTGTTTAAAATAAACCCAAAGGTTCACGTGTGCCTGGGGGGGCTGAAGGATGCACACTGCTAAGGTGTGGAAGTTTGGGAGTTCTGGGGTGCAGGTGGCCAGGGAAAGTGTTTGCTTGTGTGTGGATGTGCAGCTGGGAAATGTTTTCAAATGATCACGTTGTTTTTAAATACATTTTAAAAGCCAggctgagcatggtggctcacgcctgtaatcccagcactttggaaggccaaggcgggaggatcacttaactccaggggttcaagaccagcctgggcaacatagtaagaccctgcctctaaaaacaatttaaaaattagcaagccatggtggcacctgtagtcccagcctacttgggaggctgaggtaggaggatcgcttgagcccaggagtttgaggctgcagtgagctggtatcacaccactgcactccagcctgggcaatacaccaagaccctgtctctattaatattaaaaaaaaaTTTAAAGCCATGGCCTAGGAATGGGGGGTTCGTGGCTGTATCCTAGCCCAAGGTTGCTGTGGACTTGAGCGTCCAGATGATAA s panTro1.chr6_random 635394 877 - 67355074 TTTTAGttttttctgagtagggtctcaccctgtcacctaggccaatcatagcctctgcagcctcaagctcttgggctcaagtgatccttccacctcagcctcccacctgtaagcacaggccaccatgcccagctaatttaaaatattttttgtgtgtggaagagatgagatctcgctatgttgccgaggttgatgctgaactcctggactcaagtgatcctcctgcctcagcctcccaaagtgctggaacttcaagtgagagccaccgcgcctggTGTTGGAGCATGGTATTTAGCAGATTCATCCTATTTTTGTTTAAAATAAACCCAAAGGTTCACGTTTGCCTGGGGGGGCTGAAGGATGCACACTGCTAAGGTGTGGGAGTTTGGGAGTTCTGGGGTGCAGGTGGCCAGGGAAAGTGTTTGCTTGTGTGTGGATGTGCAGCTGGGAAATGTTTTCAAATGATCACGTTGTTTTTAAATACATTTTTAAGGCCAggctgagcatggtggctcacgcctgtaatcccagcactttggaaggccaaggcgggaggatcacttaactccaggggttcaagaccagcctgggcaacatagtaagaccctgcctctaaaaacaatttaaaaattagcaagccatggtggcacctgtagtcccagcctacttgggaggctgaggtaggaggatcgc-tgagcccaggagtttgaggctgcagtgagctgttatcacaccactgcactccagcctgggcaatacaccaagaccctgtctctattaatattaaaaaaaaatttaaaGCCATGGCCTAGGAATGGGGGGTTCGTGGCTGTATCCTAGCCCAAGGTTGTTGTGGACTCGAGCGTCCAGATGATAA a score=35344.0 s hg17.chr7_random 649222 355 + 778964 TCCCAGCTGCTGGCCTGATGAGGGCCCCACCTCCCCGCCGG-CCCCAGGCAGCAGGGCCAGCAGACCCATACCCAGGGTCCCCTCATGGCTCCCCCAGGTCCGAGGCTCTCCTTGGGCTCGGAGAGGCCTGACCTCGGAAACCAGGGCCAGGGATCCTGGGCCATCACCGAGGCTACACAAGATGATCCAGGAGG-AGCACAGG------CCAGCAGGCCGTGGCTATCAGGCACAGGCAGCTCAAAAGCGAACCAG-----ACCTCAGCTGGGTTCCCCTC-TTCGGACTGGACTTTGCCTGTCTGCGAGCCACGCCTGCCCTCAATTCTCCAGGCACAAAACCACAACATGGGGGTCCTGCCTCCAC s panTro1.chr6_random 636271 356 - 67355074 TCCCAGCTGCTGGCCTGATGAGGGCCCCACCTCCCCGCCGGCCCCCAGGCAGCAGGGCCAGCACACCCATACCCAGGGTCCCCTCGTGGCTCCCCCAGGTCCGAGGCTCTCCTTGGGCTCGGAGAGGCCTGACCTCGGAAACCAGGGCCCGGGACCCTAGGCCATCACCGAGGCTACACAAGATGATCCAGGAGG-AGCACAGG------CCAGCAGGTCGTGGCTGTCAGGCACAGGCAGCTCAAAAGCGAACCAG-----ACCTCAGCCGGGTTCCCCTC-TTCGGACTGGACTCTGCCTGTCTGCGAGCCACGCCTGCCCTCAATTCTCCAGGCACAAAACCACAACATGGGGGTCCTGCCTCCAC s canFam1.chrUn 1742557 277 + 91062872 tccctcctgcccgccca--------cccacccacccaccca-tccTGTTGAGCACAGCC------------CCAAGAG-------------CCCACAAG---AAGGCTGTC--TGGG-----------------TCAGAA--------CATGGATCCTGGTCTGCTA--GGAACTGCAGATGAGGACCCTACAGGCCTCACAGTCCGGTCCCAGGAGGCCAGGACTG--------GGGAAGGTCAGAACGGAACCAATGCCTCCTCCAGCTGGGCCCCCTCCATTCACTCTCACCCTTGTCAG------------------CCCAAATTATCCAGGTACACAACAGCAGTGTAGCAGCCCTGCCTCTGC a score=7431.0 s hg17.chr7_random 649577 84 + 778964 AGCCCCTTCCCCGGGGAGCTGCAGGCAGACAATGGCCCAGTCCAGGCCAGAGAGGGGAGCTTCAGGCATTCAACAAGAGAGGCA s panTro1.chr6_random 636627 84 - 67355074 AGCCCCTTCCCCGGGTTGCTGCAGGCAGACAATGGCCCAGTCCAAGCCAGAGAGGGGAGCTTCAGGCATTCAATAAGAGAGGCA a score=16814.0 s hg17.chr7_random 649661 120 + 778964 AGAAATcacacacacacacacacacacacacacacacacacacac--------a--caTAATGCAC----ATATAGGCCCTGTCACGGGAA-------------------CACA-ACTCCACCCC-------ACACACACACCTGTATAATGCACACACAT s panTro1.chr6_random 636711 122 - 67355074 AGAAATcacacacacacacacacacacacacacacacacacacac--------acgcaTAATGCAC----ATATAGGCCCTGTCATGGGAA-------------------CACA-ACTCCACCCC-------ACACACACACCTGTATAATGCACACACAT s canFam1.chrUn 1743016 159 + 91062872 GGAAATGacacacacatgcacacacatacagacacacacatacCCTATTCTGGA--AACCATACACATGGATACACACCCTATCCTGGAAATGATAGACACACACAGACGCACACACCCTGTCCTGGAAACGACATACACACACAAGCAGTGCATGCACAT a score=13612.0 s hg17.chr7_random 649781 167 + 778964 ACCCTGTCATGGG-GAGGCAACTCCACCCC-CCACCAGTCATGCATGTGTAATGTACACAGGGGCCCCATCGTGGGAATCTTACT--------ACACACACAGAGTGCAAGCACGCA--------------CACGCCTG----------------------GCATCAACAGAC----------------CCCTAATACA---CAGCCAGGGACTGCATGAGTAGAGTATT-----GG s panTro1.chr6_random 636833 168 - 67355074 ACCCTGTCATGGG-GAGGCAACTCCACCCCTCCCCCAGTCATGCATGCATAATGTACACAGGGGCCCCATGGTGGGAATCTTACT--------ACACACACACAGTGCAAGCACGCA--------------CACGCCTG----------------------GCATCAACAGAC----------------CCCTAATACA---CAGCCAGGGACTGCATGAGTAGAGTATT-----GG s rn3.chr12 30449909 233 - 46649226 ACTCTGTCATGAGTGTGCCAACTCCGCCCC-CACACAGACATGCATGTGAATGGTGCACACAGCTCCCAATGGAGGAATACAACTCCACCCCCACACACACACACCATACCCATTCAGCAGTTCCATAACCCACCCCCGCCCCCAGCCTCCATCAACTGCTGCACCAGGAGGCAGCCTGGAGGCATGTGCCCTGCTCCGTTCCAGCATGGCACTGCAT---TAGAGAATCCTCCAGG s canFam1.chrUn 1743175 141 + 91062872 GCCCTATCATGGG-AACACAGCACCACCTTCCACATATACACACATGTG-----------------CTGTCCCAAGCATGCAGCTCCAT----GCACACCCACATTATGA---------------------CACAGCTG----------------------GTACCAGAGAACAG--------------CCCACACACA---CAGTGA------GTGTGGTCAAGGTGG-------- a score=164213.0 s hg17.chr7_random 649948 846 + 778964 CTCTCCCAGCCCAAACCCCAGCactcatttcatcctc----ccaaccatgctacaaggaggcaagactggcacctccatttacagaa---caaactgaggcgcaggcaagctctaactaagcctgtccCTAATTGCTAGGCTG---------TCCCACC----TGCCCCCTGGAGCACACACCA----GGGAATAG--CCACCACCTTCCTGCCCTCCCA---------GGCCCTGGGGAGCTGAGCACCCAGCAGGCGCTCCATCTGTGCCCAC-----GGAACCAGCCCTGCCGCATGCAGGGTCTAAATGCAAGAACAGCCACTATGGATCACCCACTTCACCCCTCACGGTTCA--TGGGGAAACTGAGGCTAGAAAGG----AAACGGAGGCCGGGTCACCCCCTGAGCACAGGGGCGTGGGGGAATGCACGCTGCTGGGTG---------AATGAGGAGACCTCAGCCCAAGGCCAGATGCCCCCAGCCCAGTGGCCCTGCCTCCCAGGCAGTCAGGAGGGTGAAGGAGGGA------GGAGGGGAATGTTTCCCAACCTTCTTGGGGGGAAGGGGGGACTCC------AGACTCTGGAGACTGGGCATCAGCAGGGCCCCCAG-GGAGAAGGTCAGCTCTGCACCCTGGGACCAGGCAGGCTCCGAAGGTAAGCCGGT--CCCTAAGGCGCTGGGGACCAGGCTTGTCCGA----------------------GGCTGAGTTAATGGTTAACCCACAGTGCAAAGGGTGCC--------TGCAGGCGTGTGAAGTGGTCTGGGCTGCCTGGGGCGTGAGCAGA--CAGCCAAGTATGAGCTCAACAGTTGCAGGGCGTGGGGCGCCT-GGGGTCAGGAGCCAGCTCAGAAACAGGACCTGGCCTGGGAGGTTTCGCTACGTCACAAAGCGTGAGAGAAAGCG s panTro1.chr6_random 637001 846 - 67355074 CTCTCCCAGCCCAAACCCCAGCATTCGTTTCATCCTC----CCAACCATGGTATAAGGAGGCAAGACTGGCACCTCCACTTACAGAA---CAAACTGAGGCACAGGCAAGCCCTAACTAAGCCTGTCCCTAACTGCTAGGCTG---------TCCCACC----TGCCCCCTGGAGCACACGCCA----GGGAATAG--CCACCACCTTCCTGCCCTCCCA---------GGCCCTGGGGAGCTGAGCGCCCAGCAGGCGCTCCATCTGTGCCCAC-----GGAACCAGCCCTGCCGCATGCAGGGTCTAAATGCAAGAACAGCCACTACGGATCACCCACTTCACCCCTCACGGTTCA--TGGGGAAACTGAGGCTAGAAAGG----AAACAGAGGCCGGGTCACCCCCTGAGCACAGGGGCGTGGGGGAATGCACGCTGCTGGGTG---------AATAAGGAGACCTCAGCCCAAGGCCAGATGCCCCCAGCCCAGTAGCCCTGCCTCCCAGGCAGTCAGGAGGGTGAAGGAGGGA------GGAGGGGAATGTTTCCCAACCTTCTTCGGGGGAAGGGGGGACTCC------AGACTCTGGAGACTGGGCATCAGCAGGGCCCCCAG-GGAGAAGGTCAGCTCTGCACCCTGGGACCAGGCAGGCTCCGAAGGTAAGCCGGT--CCCTAAGGCGCTGGGGACCAGGCTTGTCCGA----------------------GGCTGAGTTAATGGTTAACCCACAGTGCAAAGGGTGCC--------TGCAGGCGTGTGAAGTGGTCTGGGCTGCCTGGGGCGTGAGCAGA--CAGCCAAGTATGAGCTCAACAGGTGCAGGGCGTGGGGCGCCT-GGGGTCAGGAGCCAGCTCAGAAACAGGACCTGGCCTGGGAGGTTTCGCTACGTCACAAAGCGTGAGAGAAAGCG s mm5.chr5 136383592 773 + 149219885 CCCTCAGAATCCAGACACCAGGACTCATTTAACCCTCCTGGCCAGCCAGTGAGTGAGGAGGCAGGATTGTCACCTCCACAGATAGAAAAGAAAAATCAGGCACAACCAGCCCTCTCCTGAG-GTGACCCGGAGAGCGTGGCTGGCGGCTTGTTCCAACCTCGATGCCACCTGGAATAAGTGTCA----GAGAACAG--CCA-----------CCCTCCCA----------GCACTGCAGAACT--GCATACAACCAGTGCCAAATCTGTGTCC-----------------------------------GACTCCCAGAGCAGCC-CTAAGGGGTCTCTACCTCACATCCCGCCATACA-CTAGGGAAACTGAGGCTACAGCAGTACTGAACCCACTCCGGGTGGCTTA--GAGCACCTAGCAGTG-----------GCAGCCTTGTG---------A-------------CGTTCAATGCTGGAAA----CAGTGC-GTGGCCCACCC---------------AGAGTGACCGGGGGAGCTTGGGCAGGAGAACACTCCCCAGTGTTCTCCCAAG---------------------GGTATTAAAGCTCAGGCACCAAGAGGACCCTTGGAAGCTATGGTCAGCCATCCGCCAGAGTACCAGGC-------------CAGGCAGC--TTTCAGAGTCCTGGGGACCAGACTCAGCCAGACTCTGCTGTGGCTACCGACTTGGCTACATTAATGGTTAACATG-GGTGCAAAGGGTGCCGGGTGCCTGGCGGGCGTGGGAAGTAGAATGGG-TGCCCCAGGTGTGAACAGAGTCTGCCAAGTATGAGCTCAGCA--TGGAGGGCGTGGG--GCCA-GGGGTCAGGGGTCA----------AGGGCC-AGCCCAGGAGGTTTCACTACGTCAGAAAGCGGGAGGGACAGCA s rn3.chr12 30450148 757 - 46649226 CCCTCGGAGTCCAGACACCAGCGCTCATTTAA---------CCAGCCAGCCAGTGAGGAGGCAGGATTGTCACCTCCATGGATAGAAAAGGAAAATCAGGTACAGCATGCCCTCTCCTGAG-GTGACCCGGGGAGCGTGGTTGGCGGCTTGTCCCAACCTCGATGCCACCTGGAACATGTGCTA----GAGAACGG--CCA-----------ACCTCCCA----------GCCCCGCAGAACT--GCATACAACCGGTGCCAAATCCGTGTCC-----------------------------------GACTCCTAGAGCAGCC-CTAAGGGATCGCAACCTTACACCTCGCCATATA-CCAGGGAAACTGAGGCTACAGCAGTGCTGAACCCACCCCAGGTAGCCTG--GGGCACCTAGCGGTG-----------GCAGCCTTGTGCTATGCGATAATGGGGA--------------------------CAGTGC-TTGGCCC-------------------AGAGTGACTGAGGGATTTTGGGCAGGGGAACATTTCCCACTCTTCTTCCAAG---------------------GGTATCAATGCTCAGGAGCCAAGAAGACCCA----AGCAATGGTCAGCCATGCACC--AGTACCAGGT-------------CAGGCAGCCACTTCAGAGTACTGGGGACCAGACTCGGCCAGACTCTGCTGTGGCTACCAACTTGGCTACATTAATGGTTAACATG-GGTGCAAAGGGTGCCAGGTGCCCAGCGGGCGTGTGAAGTAGAATGGG-TGCCTCAGGTGTGAACACGGTCTGCCAAGTATGAGCTCAGCA--GGTAGGGCGTGGG--ACCAGGGGGTCAGGGGTCA----------AGGGCC-AGCCCAGGAGGTTTCGGTATGTCAGAAAGCAGGAGGGACAGCA s canFam1.chrUn 1743316 707 + 91062872 ----------------------CCTCACTTCATCCTA----------ATTCATGAAGGAAACAAG--TAACATC---------AGAGGAGCAACCT--------------------CCCAGCCTGTCTCTGCAGCCCCAGTGGGC-------TCCCCTC---------CCAAGAGCTCAGTCCCTGGTGGGGACAGGTCCAGCA--------TCTTCCCATGAGCCCTGGATCCCACAGACCCGGGCACATGGCAGATGTTCCACCTATACCAACACTGGGGCTGCAGTCCTA---------------GGTCCTGGGAATGGCC-CTCAGAGATATCCATACC--------CTGTTTACCTGGGGAGACTGAGTCAGAAGGGGAGCAGGGCCCAC-CCGGGTTACGCCCCAAGCATGTGGAGGCA-----------TCAGGCCATTG----GCAGAGGTGAGGGGATCCCGGATGGAGAGCAAAAGCCCCCAGCCT-----------------------------GGGGACAGTAGGG------AGAGGGGAAAGTT---------------GGACAGAGAGGTGCTCCTGTACAGAGGCCTGGAGTCCAGAGGCCAG--AGGCCCCCGG-GGCAAGA----------------GGGAT--GGCCCACCCCACAGGTGAACTGGC--CC---------------CAAGGCTTGTCCAGACCTGTCAGTGGCCACTG----GGCTGCATTAATGGTTAACCTGCAGTGCAAAGGGTGCCGGGTGCCCGGCGGCCGTGGGAAGTGGAATGCG--GCCTCGGGTGTGAATGTGGACAGCCAGGTGTGAGCGCAGAG----------GTGGG-------GTG----GGAGCCAGGCCAGGTTTGGGACCAGGTCTGGGGGGTTTCCCAAGTTAGAGAAGAGGCAGAGGAGGGG a score=-676.0 s hg17.chr7_random 650794 7 + 778964 -GCCAGGA-------- s panTro1.chr6_random 637847 7 - 67355074 -GCCAGGA-------- s mm5.chr5 136384365 7 + 149219885 -ACTTGGG-------- s canFam1.chrUn 1744023 16 + 91062872 AGCTCAGGCATGAGTA a score=9354.0 s hg17.chr7_random 650801 118 + 778964 -CACTGCCGC----------TTCCTACATGGGGCTCCGTTCCACTCGGGAGGCCTCAGATCAGCCTCCACACTCCCGCGGCAATCTGCCCCTTTCCCCAGGACAGAATCCTCCAGAGAGAGGCCTCCGC s panTro1.chr6_random 637854 118 - 67355074 -CGCTGCCGC----------TTCCTACACGGGGCTCCGTTCCACTCGGGAGGCCTCAGATCAGCCCCCACACTCCCGCGGCAATCTGCCCCTTTCCCCAGGACAGAATCCTCCAGAGAGAGGCCTCTGC s canFam1.chrUn 1744039 100 + 91062872 CCCTAGCCGCAGAGCAGGGTCTGCTCCACAAGGCACC-TGCCACTCTGGGAGGCTGGGACCA-------------CACAGGAAT--------------GAGAGAGAAACAGACAGACAGACTCTCGGG- a score=20633.0 s hg17.chr7_random 650919 92 + 778964 AGGCCGTGCACACA-----------CTTCCACC-Tcccatctgtaaaacggagac--caatcacacccacccagg-agttgaggaataaatgagg------ctgca----catgcag s panTro1.chr6_random 637972 89 - 67355074 AGGCCGTGCACACA-----------CTTCCACC-TCCCATCTGTAAAACGGAGAC--CAATCACACCCACCCAGG-AGTT---GAATAAATGAGG------CTGCA----CATGCAG s mm5.chr5 136384495 104 + 149219885 ATGCTATCCAGATA-----------CCTCCAAC--CTGACCTGTGAAATAGGGACAGTGGTCACACCCACCCAGGTAGCTCATGAAAGAATAAAGTTTTCTCTGCAGCGGCAGCCAG s rn3.chr12 30451040 99 - 46649226 ATGCTGTCCAGATA-----------CCTCCAAC--CTGACCTGTGAAATGGGGACAGTGGTCACACCCACCCAGGTAGCTCATAAAAGAGCAAAGTTACCTCTGCA----GAGGCA- s canFam1.chrUn 1744139 87 + 91062872 ATGTGGCGGACACAGGGGCAGAgagcctccactttcctatctataaaatgggaacaagaaccgtggcccccaggg--------------------------ctTCA----CATGTAT a score=0.0 s hg17.chr7_random 651011 16 + 778964 aaggccccagaaacga a score=774.0 s hg17.chr7_random 651011 5 + 778964 aaggc s panTro1.chr6_random 638061 5 - 67355074 AAGGC s mm5.chr5 136384599 5 + 149219885 AGGTC a score=3082.0 s hg17.chr7_random 651016 11 + 778964 cccagaaacga s panTro1.chr6_random 638066 11 - 67355074 CCCAGAAACGA s mm5.chr5 136384743 10 + 149219885 CCTAGAAATG- s rn3.chr12 30451139 11 - 46649226 CCCAGAGATAA a score=5192.0 s hg17.chr7_random 651027 25 + 778964 ggacaaagccagccttcaaGAGTGG s panTro1.chr6_random 638077 25 - 67355074 GGACAAAGCCAGCCTTCAAGAGTGG s mm5.chr5 136384753 25 + 149219885 GGACACAGCCACCCTATAGGAGGAG s rn3.chr12 30451319 25 - 46649226 GGACACCGCCACCCAACAGGAGTTC s canFam1.chrUn 1744226 14 + 91062872 GGGAACAGCT--------GGGG--- a score=1602.0 s hg17.chr7_random 651052 9 + 778964 GCTGCCACT s panTro1.chr6_random 638102 9 - 67355074 GCTGCCACT s rn3.chr12 30451344 9 - 46649226 GCTTCAAAA s canFam1.chrUn 1744240 9 + 91062872 CTTGCCACT a score=0.0 s hg17.chr7_random 651061 18 + 778964 GGCGTGGATTCTAATCCA a score=1294.0 s hg17.chr7_random 651061 15 + 778964 GGCGTGGATTCTAAT s panTro1.chr6_random 638111 15 - 67355074 GGCGTGGATTCTAAT s rn3.chr12 30451353 15 - 46649226 GGAATCAATATTCGC a score=1104.0 s hg17.chr7_random 651076 3 + 778964 CCA s panTro1.chr6_random 638126 3 - 67355074 CCA s mm5.chr5 136384852 3 + 149219885 CCA s rn3.chr12 30451368 3 - 46649226 ACA a score=6391.0 s hg17.chr7_random 651079 129 + 778964 GAGCCCC-----AAAACCAACCCACCC--------------------------------------------CCTGGTCCCCAAGCTCAGC---ACAGTACCA-CCAC--CCACCCACCACAGGCAGAGAGTGGGTCTAGAGCCACCC--------TCCTGTTGAGGGCC-----------TGGGGTCGGAGAGGCCCGGCCCG s panTro1.chr6_random 638129 130 - 67355074 GAGCCCC-----AAAACCAACCCGCCC--------------------------------------------CCTGGTCCCCAAGCTCAGC---ACAGTACCACCCCC--CCACCCACCACAGGCAGAGAGTGGGTCTAGAGCCACCC--------TCCTGTTGAGGGCC-----------TGGGGTGGGAGAGGCCCGGCCCG s mm5.chr5 136384855 134 + 149219885 TGTCCCC-----AGAAGCAATGCAATC--------------------------------------------CCCGGTCCCTAAGCTCAG------GGTCTCA-CACT--CCACCC--------CAGGGAACAGA---AGGGCAACCCCTGTCTCTCCCCTTCAAGAGCCCTGAGGTAGGTCAGGGAGGGAGAACTTCTTCCAA s rn3.chr12 30451371 187 - 46649226 AGACTCCTTATTAAAATTAA-GCACCCAAGCTCTGTTCAACAAGTCATCATGTCCCCAGAGGCACTGCAATCCTGGTCCCTAGGCTCAGATAGGTGGTCTCA-CACT--CCACCC--------CAGGGAACAGA---AGGGCAATCCCTGTCCC-TCCCTTCAAGGACCCTGGGGTGGGTGGGGGAGAAAGTAGTTCTCCTAA s canFam1.chrUn 1744249 117 + 91062872 --------------GAGCCACGTTCCCAAGCA---------------------------------------ACTGAGCCCTGGTATCAGC---ACATTTTTG-CCTTTGCAAAGC--------CAGCCCCCAGGCCCAGAGTGAACC--------TCCCCTTGAGAACAC----------TGGGAGGGATGCATCTCAGC--- a score=10416.0 s hg17.chr7_random 651208 111 + 778964 AGGATGAACTGCAGCAAAGC--CCCAA--GAGGAGCAGCAGG-GCCACCTGGGACCTCA-------GC-------CACCCC-CAGCCCTGCAAGCATGTCCTCAGCCC---TCCCTGAGTCAAGAACTGCCCAG s panTro1.chr6_random 638259 111 - 67355074 AGGATGAACTGCAGCAAAGC--CCCAA--GAGGAGCAGCAGG-GCCACCTGGGACCTCA-------GC-------CACCCC-CAGCCCTCCAAGCATGTCCTCAGCCC---TCCCTGAGTCAAGAACTGCCCAG s mm5.chr5 136384989 103 + 149219885 AAGAAAAACATCAGC-CAGT--CCCAA--GAGGAGCTGTAGG------CAGAGATGCCA----------------CAGTCC-CCAACCTCCAAAGATGTCTATTGCCT---TTGGTGATCCAGCAAACTCCTAG s rn3.chr12 30451558 114 - 46649226 AGGGAAAACATCAGC-CAGT--CCCAA--GAGGAGCTGTAGG------CAGAGGTGCCACATCCTTGC-----CACAGTCC-CCAACCTCCAAAGATGTTCATAGTCT---TTGGTGATCCAGCAAACTTCCAG s canFam1.chrUn 1744366 101 + 91062872 -------ACCTCAGT-GAGCCTCCCAA--GAGG-GCAGAGGA------CCGGGGCCTGA-------GCCTGGCCACCATGC-CAGCCCTCCACGTG-GGCCTCAGCCCCTGTCCCTGAGC------AGCCCTA- s galGal2.chr14 4201026 104 + 20603938 AGGATGGGAAATA---AAGC--CAGAAATGACAGACTGAAGGCGCTCCCTGGGA--TTA-------GC-------CATTTCTCCCATATTCAAGCA-CCCTACAACCC---CCTCTTTACC-----ACCCTCAG a score=-4943.0 s hg17.chr7_random 651319 44 + 778964 ---GTAGTAAGTAACTAGGGATCCCAGTGCGCAAAACCAGGCCCAGC s panTro1.chr6_random 638370 44 - 67355074 ---GTAGTAAGTAACTAGGGATCCCAGTGCGCAAAACCAGGCCCAGC s rn3.chr12 30451672 26 - 46649226 -------------------GATGCC--TAGGTAAACCCAGGCCTGAA s canFam1.chrUn 1744467 27 + 91062872 ---GGCCCAAGCAGGTAGG-----------------TCAGAGGCAGC s galGal2.chr14 4201130 38 + 20603938 GTCTCTGAGGGGGACGCAGGCCTACAGGGCGCAAAGGC--------- a score=-2403.0 s hg17.chr7_random 651363 45 + 778964 CCCCTCCTGCCTCAGCAGGGA----CCGAGTTCCTTCCTCCCCTCCCCT s canFam1.chrUn 1744494 23 + 91062872 -CCC-------------------------ATGTCTGCCACCCCAGCTCT s galGal2.chr14 4201168 45 + 20603938 ACCGGAGGGGCTCAGCGGGGACCTGCCAAGTCCCTGCATGCTCCA---- a score=739.0 s hg17.chr7_random 651363 45 + 778964 CCCCTCCTGCCTCAGCAGGG----ACCGAGTTCCTTCCTCCCCTCCCCT s panTro1.chr6_random 638414 45 - 67355074 CCCCTCCTGCCTCAACAGGG----GCCGAGTTCCTTCCTCCCCTCCCCT s canFam1.chrUn 1744494 23 + 91062872 -CCC-------------------------ATGTCTGCCACCCCAGCTCT s galGal2.chr14 4201168 45 + 20603938 ACCGGAGGGGCTCAGCGGGGACCTGCCAAGTCCCTGCATGCTCCA---- a score=-19209.0 s hg17.chr7_random 651408 147 + 778964 -GGAGGCC---CTGGACACAGGTCCCAGCAGGAGGAACAGCACCAGCCTCACACCCTGCCAT---CTCCCAGGCTCGAAGCACCCATACTCTGCTGCT-CCCAC----------CCACCCCCAGCCTCTGCAGGG---------------GTGGCCAAGTGAGGCATGGGGCA-----------GGTGGGC s panTro1.chr6_random 638459 147 - 67355074 -GGAGGCC---CTGGACACAGGTCCCAGCAGGAGGAACAGCACCAGCCTCACACCCTGCCAT---CTCCCAGGCTTGAAGCACCCATACTCTGCTGCT-CCCAC----------CCACCCCCAGCCTCTGCAGGG---------------GTGGCCAAGTGAGGCATGGGGCA-----------GGTGGGC s mm5.chr5 136385138 75 + 149219885 -AGAGACC---ACGGCCACAGACACCAGTGGTGGG---------------------------------------------------TGCTCTCCT-CT-TCCA---------------CCACAGCCTCTGTGGTG---------------GGAACCAGGTAG----------------------------- s rn3.chr12 30451698 66 - 46649226 -AGAGACC---ATGGTCACAGACACCAGCAGGTGG--------------------------------------------------GTGCTCTGCC-----------------------------CCTCTGTGGCC---------------AGGACCAGGTG---------------------------GGC s canFam1.chrUn 1744517 75 + 91062872 -------------------------------------------GAGCACTACACACTCCCA-------------------CACCCATGCACAGCTGCC-CTC-------------CATCACTGGACTCTGCTGGG---------------G--------------ACATGGAA-----------GGGGGGT s galGal2.chr14 4201213 191 + 20603938 GGGAGGGCAGGACGGGCACAGTGCCCACCAGGAGACACGCTGCCAGCTGAGCACACTGCCCCGTGCACGGAGGCAGGCCGCCCCGCAGCCTGGCTGCCACCCACATTAAAAACTCCATTAAAGACCTCTGCAGAGCACTCCTCCAGCCCAATCCCCAAGGGAAGCTCAGTGCACAGACACATAGGGAGTGC a score=-3288.0 s hg17.chr7_random 651555 46 + 778964 TCT-----------GAAA---TCTGGGTTC-GTGGGGATGG----GCTCGGGCAGGGCGCCCT-GT s panTro1.chr6_random 638606 47 - 67355074 TCT-----------GAAA---TCTGGGTTC-GTGGGGATGG----GCTCGGGCAGGGCGCCCTCGT s mm5.chr5 136385213 3 + 149219885 ------------------------------------------------------------CCT--- s galGal2.chr14 4201404 66 + 20603938 TCTCCCTGCACAGAGAGAGGCCCTGGGTGCTGTGGGGCCGGGGAAGCCCAGGCAGAGCAGCCCTGT a score=9011.0 s hg17.chr7_random 651601 100 + 778964 TCTGCTCCCGGCCCTGACCCTCCGGATGGCACAGCCTC-TTTGGTCAACAAGCAGCCTCACCTAGTTCCCTCGGCAGGGCAGATACCAGGGCCTGGCTCGG- s panTro1.chr6_random 638653 101 - 67355074 TCTGCTCCCGGCCCTGACCCTCCGGATGGCACAGCCTCTTTTGGTCAACAAGCAGCCTCACCTAGTTCCCTCAGCAGGGCAGATACCAGGGCCCGGCTCGG- s mm5.chr5 136385216 44 + 149219885 ----CACGCGGCCCTGA-----------GCACAGGCTG--------------------------------TCAGAAGG----------GGACTTGGCTTGG- s canFam1.chrUn 1744592 78 + 91062872 --------------------TTCTGGGGGCGCAGCCTC---TGCTCAGCAAGTA-CTTCACCCACTTCCTCTAGGGAGGCAGGTACTAGGACCCAGGCTGGG a score=0.0 s hg17.chr7_random 651701 7 + 778964 CAGAGAC a score=-400.0 s hg17.chr7_random 651701 4 + 778964 CAGA s panTro1.chr6_random 638754 4 - 67355074 CAGA s mm5.chr5 136385260 4 + 149219885 TTTT a score=1213.0 s hg17.chr7_random 651705 3 + 778964 GAC s panTro1.chr6_random 638758 3 - 67355074 GAC s mm5.chr5 136385264 3 + 149219885 AAC s rn3.chr12 30451815 3 - 46649226 AAC a score=74022.0 s hg17.chr7_random 651708 295 + 778964 CGCAGGCCCGTCTGGCCAGACA------CCAGACGCCCAGGCGAGGGGCAGGCTCGCTCTCAACCACTCGAGATGGCCGGCCACCGCGGGCGCGTGGGCTCCCAG---GACACAACAGAAATGCCACC------CCTCTG-GGCACCGTGCGAAAGGCACATGGCACG---GCCGCTC--GTCTGGGAACCCACTGCCTCCTCAGACAAGCCCGTTTTTATCAAACAAAAACAAACAGCG----ATGATTGCACCTGTTTCTGAGTATGCCAGGATTCCGGGCCGTTCCGCCACCTCTGTCTGGCCAGGAAATAGCTACA s panTro1.chr6_random 638761 295 - 67355074 TGCAGGCCCGTCTGGCCAGACA------CCAGACGCCCAGGCGAGGGGCAGGCTCGCTCTCAACCACTCGAGATGGCCGGCCGCCGCGGGCGCGTGGGCTCCCAG---GACACAACAGAAATGCCACC------CCTCTG-GGCACCGTGCGAAAGGCACATGGCACG---GCCGCTC--GTCTGGGAACCCACTGCCTCCTCAGACAAGCCCGTTTTTATCAAACAAAAACAAACAGCG----ATGATTGCACCTGTTTCTGAGTATGCCAGGATTCCGGGCCGTTCCGCCACCTCTGTCTGGCCAGGAAATAGCTACA s mm5.chr5 136385267 240 + 149219885 TACAGCCCTG--CAGCCTGAC-------CCAAAC-CCTGCCTGCAGGGCAAGTACAACCTTCTCCACT-GAG--------------------------------------------------------------CCTAGG-GGTCCCCTGCATGAGGAGCAACTCATG--AGCCGCTCCAGCTGGGGAGGCCCATTCTTC--CAGACAGGCCCATGGTTATCAGACAGAAACAAACAGCGGTTTATAGTAGCACCTGCCT-TGGGAATGCAAGGATTCC-AGCCGCTCTGCCACCTCTGTCTGGCCAGGAAATGGCTACA s rn3.chr12 30451818 278 - 46649226 TGCAGTCCTC--CAGCCCGACACAACCCTTAGATTTTCCCATGAGGGCCGATCCTAGACCCAACCCCCTGA------------CTGCAGG---------------------GCAATAAAACTTTCTCCATTGAGCCTAGG-GGTCCCCTACATGAACATCAAGTGTTG--AGGCGTTCCAGCTGGGGAGCCCCACTCTTC--CAGACAGGCCCACGGTTATCAGACAGAAACAAACAGTGGTTTATAGTAGCACCTGCCT-TGGGAATGCAAGGATTCC-AGCCACTCTGCCACCTCTGTCTGGCCAGGAAATGGCTACA s canFam1.chrUn 1744670 256 + 91062872 --------------------------------------CGCAGGGGGGCAGGCT-GGTCTCCACCCTACCAG---ACCAGCCTCGGTGGA-----------GAAGATAGACGCTCCAGAACCGCCCCC------CCAAAACAGTCCCCTTGGCCAAGCACTCCCAACACCAGCCACTCCGGTCTGGGAACCCACTTTCTCCTCAGACGAG-CCGTTTTTATCAAAGAAAAACAAACAGCGATTTATGATTGCACCTGCTTCGGGGTATGTGAGGATTCCAGGCCATTCCGCCACC----TCTGGCCAGGAAATAGCTGCA a score=28070.0 s hg17.chr7_random 652003 220 + 778964 TTTTTCTCCCAAGAACACAAAATGAATATTGGATTCTCACAAAAACCTCCTCCATAAAAGAAGGCCAAGTCCA-AAGAAC-AGACTACAATGTCCTCAGGACCCCCACGGGGG------GTACCCCGG----CCCCCAGGCCCCAAGCCGAAGCCCAAGTGATGGGGGGGGTCCCCATG----TCCCTCCCCTTTTTC----CGTCCCAGAGATGTGGGCTGCACCTTATCACACCAGAC s panTro1.chr6_random 639056 220 - 67355074 TTTTTCTCCCAAGAACACAAAATGAATATTGGATTCTCAGAAAAACCTCCTCCATAAAAGAAGGCCAAGTCCAGAAGAAC-AGACTACAATGTCCTCAGGACCCCCACGGGGG------GTACCCCGG----CCCCCAGGCCCCAAGCCGAAGCCCAAGTGAT-GGGGGGGTCCCCATG----TCCCTCCCCTTTTTC----CGTCCCAGAAATGTGGGCTGCACCTTATCACAGCTGAC s rn3.chr12 30452098 208 - 46649226 TTTCTCTCCAAAGGACATGTTATGAATAGTAAATTTTCAG---AACCGTCTCCGTGAAAATAGA----------AAAAACGAGATGGTAACGTCC-CGGGAATCCCACTTGTGCCCCACGCATTCCAGAGCTCCCTCACGTCCCACCCAGAGCGTCACCTGGCCAGGCCAGTATCCA-G----GCATTCCCCTG-------------CAAGGAAGCGGGGCTTGTCCTATTACGCCAAGC s canFam1.chrUn 1744927 191 + 91062872 TTTTTCCCCCAAGAACACACTGTGAATATTAACTTCTCAGAGCAGCCTCTGCTCTA-------GCCAAGTCCC-CAGAACAAGATGTTTACGTCCTTTGGACCC---------------TTCCCATGG----CCTC--GGCCCCAAACAG-------------------GGTCCCCAGGCTCCTCCCTCCCCTCTCCCTTCGTGTCCCGTGTGTGGGAGCTGCACCTTGT-AAAGAGGAC a score=8849.0 s hg17.chr7_random 652223 66 + 778964 ATTCCGATTCCCCACGGCTGAGTTCATCTGCGTCGTAAGCCGCCCCACCTCAACACTCCCGGCGCG s panTro1.chr6_random 639276 66 - 67355074 ATTCCGATTCCCCACGGCTGAGTTCATCTGCGTCATAAGCCGCCCCACCTCAACACTCCCGGCGCG s canFam1.chrUn 1745118 62 + 91062872 -CTTCCACTTCCCACCTC-GAGTCTGCCT--GGCAGGAACCACCCCACCTGCACGCTACCAGGGCA a score=0.0 s hg17.chr7_random 652289 14 + 778964 AACTCACCCAAGAC a score=564.0 s hg17.chr7_random 652289 6 + 778964 AACTCA s panTro1.chr6_random 639342 6 - 67355074 AACTCA a score=1363.0 s hg17.chr7_random 652295 8 + 778964 CCCAAGAC s panTro1.chr6_random 639348 8 - 67355074 CCCAAGAC s mm5.chr7 12660888 8 - 133051633 CCTAGGAG a score=12069.0 s hg17.chr7_random 652303 77 + 778964 TACAACCCAGGGATGCCGTCACCCCTCTAGACCTGGGATGCC---------------GAGTCCCTACTGCTACAAAGCCC-----AGAAGCTGCAGA s panTro1.chr6_random 639356 77 - 67355074 TACAACCCAGGGATGCCGTCACCCCTCTAGACCTGGGATGCC---------------GAGTCCCTACTGCTACAAAGCCC-----AGAAGCTGCAGA s mm5.chr7 12660896 79 - 133051633 GGCAGCCCTGGGATGCTGCTGTCCTTCCTGGCCTAAACTATC---------------CAGTGCCCACTT---CAGAGTCCAACAGAGTAGCTTCAGA s canFam1.chrUn 1745180 77 + 91062872 TGCAATCCAGCGATGCCGTCACCCTTCCATTCCAGGGACCCCAAGCAAAGAGGACCTGAGCTCCTGCTCCT------CCC-----AGT--------- a score=33463.0 s hg17.chr7_random 652380 216 + 778964 GACCCCCTGAGGAGGGCTTGGGACAGCCACTCCCTGCGGGGGACCCCACCCCAACTCCAGGTTACGGCCTGACCCTTTCAAGGCTCCAAGACAGAGTATTAGCCATGAAAGACACCTG-----ACTGGACCGCACGTGCCCGtcactgtaaccctcacagctaccctgtgaggacaccatcgtggtccattctagagatgagaacacacagca---cagacaag s panTro1.chr6_random 639433 204 - 67355074 GACCCCCTGAGG------------AGCCACTCCCTGCGGGGGACCCCACCCCAACTCCAGGTTACGGCCTGACCCTTTCAAGGCTCCAAGACAGAGTATTAGCCATGAAAGACACCTG-----ACTGGACCACACGTGCCCGTCACTGtaaccctcacagctaccctgtgaggacaccatcgtggtccattctagagatgagaacacacagca---cagacaag s canFam1.chrUn 1745257 218 + 91062872 GTCCTCCACTGG---GCCACGGAGAGCGATGCCCTGCTGGGGG--GCACCACATCCCCAGGTCATGGCCTGACCACTCCAGAG-TCAAGGGCAGAGCAGCATCTGTGATAAACACCTGCATTTACTGAACCCCAGGTGCTGGTCACTGCGACGctcacagctaccccgtgagggcacaattacggcccgttttacagacaggaaaatgaggcagttcagacagg a score=6499.0 s hg17.chr7_random 652596 69 + 778964 ggaagccccttgcccagagtcacacagcGTTGAATCTCCATCCCTAGCCTGCACTCCTTCTCACCTCTT s panTro1.chr6_random 639637 69 - 67355074 ggaagccccttgcccagagtcacacagTGTTGAATCTCCATCCCTAGCCTGCACTCCTTCTCACCTCTT a score=9072.0 s hg17.chr7_random 652665 81 + 778964 TCACGGAAAGAAAGCCTAGAGTC----------------------------------CAGAGCCCTGGCCCCACCGCCCCACAGCCCCACCTGGGTGTCTCTCGACAGAGACTTG s panTro1.chr6_random 639706 81 - 67355074 TCACGGAAAGAAAGCCTAGACTC----------------------------------CAGAGCCCTGGCCCCACCGCCCCACAGCCCAACCTGGGTGTCTCTCGACAGAGACTTG s canFam1.chrUn 1745602 109 + 91062872 TCCAGCACGGAAATCCTGGAGTCCCTCCGAGTCCACTAGATCCACTCGGAACTGAAGCGGAGCCCCAGAGTCACAGCACCAGACCTCCACATGG------CTCGACAGGCGTCTG a score=44482.0 s hg17.chr7_random 652746 493 + 778964 GAATGTCACTCAATCCAGATGCTGACTTGGGTCATGAGGACCCCagctgggtgcggtggctcacg-cctgtaatcccagcactttgggaggtcgaggcgggcagatcacctgaggtcaggagttcaagaccagcctgaccaatatggcgaaacctcatctctact-aaaaaaatacaaaaaatagccaggcgtggtggtgagtgtctgtaatcccagctactcgagaggctaaggcagaagaattgcctgaacccgggaggtggaggttgcagtgagctgatatcgggccactgcactccagcctgggcaacagagtgagactctgtctcaaaaaaaaaaaaaaaaTCCCTCAAGTCGGGCGTGGAGGAGGTTCATACCTGtgatcccaggaatttgacaccagcctggccaacaaagcaagaccctgtctttataacaaagaaaaaaaaAGAAGATCCTGCCTCCTTCAGCACTGCCCCCATATCCATTAAGAA s panTro1.chr6_random 639787 492 - 67355074 GAATGTCACTCAATCCAGATGCTGACTTGGGTCATGAGGACCCCagctgggtgcggtggctcacgccctgtaatcccagcactttgggaggtcgaggcgggcagattacctgaggtcaggagttcaagaccagcctgaccaatatggcgaaaccccatctctactaaaaaaaatacaaaaaatagccaggcgtggtggtgagtgtctgtaatcccagctactcgagaggctaaggcagaagaattgcctgaacccgggaggtggaggttgcagtgagctgagattgggccactgcactccagcctgggcaacagagtgagactctgtctc---aaaaacaaaaaaaTCCCTCAAGTCGGGCGTGGAggaggttcatacctgtgatcccaggaatttgacaccagcctggccaacaaagcaagaccctgtctttataacaaagaaaaaaaaagaagaTCCTGCCTCCTTCAGCACTGCCCCCATATCCATGAAGAA a score=55941.0 s hg17.chr7_random 653239 661 + 778964 TGGAAGCAATGCCCAG---ACCTCAAGCTCGTGTA----AGAGGCCCCTGCCCAGCCTGGCTCAAGAGGACCTCCACTCCG----------CCCACCTAGAGACTCCTGCACCAGACCCCA-----------GAGAGTGGACAGAGTCGTGGCTGGGAGCTTCT--CACCCGTAACACCCCAGCCACTCTG---------------------------TTCCAGGGAGCAGAGGCCCATCCCAAG--------------CACCAG--GTGAGCACAC-----ACCTTC-------TGGAAGCCTCCAGCA------------CAGCAAGGTGGG-------CTCAGAGCCAGCTCCGTCCAG-GCTAGACCCCTGCAGTCCTCGGGCTGGCATCTCATCCCCATGGTCCACGTTCAGGCCCACACTCCTGTCCTA-CCCCCGAGGCTTGGGTCTGGGGGAGAG------------------------TCGGGCGTCCAGG---------------------------------------CACCAAGAGCTAACTGTGCCAGGCAGAGTGCAAGGAAACACCCACCCAGCTAGGGACCCCGGCCAGTCACTCCCCCAGGGCTGCCGGTCAGTCACATCCTGGTGATCCCAGCAGGGTCTGTGCCAGGCAGTGA-CACTCCCAGCTTCACTACCATCCATCTTCTAACAAGA-------------GACCTCTGAATGTTG---------ACCGGAAAGGCATAAAAACTGGAAATGGGGGATGCCATG----CCCATCCTGGGTGGACA-----------------------------------GACTTTGGGGGCCC-----CTCCCGGCCAGCC----------------------CCAACCCCTTTGACCTCAGCTGA------------------- s panTro1.chr6_random 640279 656 - 67355074 TGGAAGCAATGCCCAG---ACCTCAAGCTCGTGTA----AGAGGCCCCTGCCCAGCCTGGCTCA--AGGACCCCCGCTCCG----------CCCACCTAGAGACTCCTGCACCAGACCCCA-----------GAGAGTGGACAGAGTCGTGGCTGGGAGCTTCT--CACCCGTAACACCCCAGCCACTCTG---------------------------TTCCAGGGAGCAGAGGCCCATCCCGAG--------------CACCAG--GTGAGCACAC-----ACCTTC-------TGGAAGCCTCCAGCC------------CAGCAAGGTGGG-------CTCAGAGCCAGCTCTGTCCAG-GCTAGACCCCTGCAGTCCTCGGGCTGGCATCTCATCCCCATGGTCCACGTTCAGGCCCACACTCCTGTCCTA-CCCCCGAGGCTTGGGTCTGGGGGAGAG------------------------TCGGGCGTCCAGG---------------------------------------CACCAAGAGCTAACTGTGCCAGGCAGAGTGCAAGGAAACACCCACCCAGCTAGGGACCCCGGCCAGTCACTCCCCCAGGGCTGCCAGTCAGTCACATCCTGGTGATCCCAGCAGGGTCTGTGCCAGGCAGTGAGCACTCCCAGCTTCACTA----CCATCTTCTAACAAGA-------------GACCTCTGAATGTTG---------ACCGGAAAGGCATAAAAACTGGAAATGGGGGGTGCCATG----CCCATCCTGGGTGGACA-----------------------------------GACTTTGGGGGCCC-----CTCCCGGCCAGCC----------------------CCAACCCCTTTGACCTCAGCTGA------------------- s canFam1.chrUn 1745781 894 + 91062872 CAGGAGCCACGTCCAGGGCATCTCCACCCACTGTGGGGCAGGGGCTCAGAGCCA---TATCACATGAGGCCCCTCTCGCCAGGCCTTAGATTTCTCCCCAAGCCTCCTGGACTAGATCTCACACTCACATCGGAGCGCAAACACACCCAGACCC---ACCTTCTGGAAGCCATAG----CCGGCCACTCTGGTCATGGCCGTGGAGCTGGGTCGCAGCTTCTGGAGACCTGGGGGCCAGGCCAAGATAATCGACTAACCCATCAGCTGTGAACCCACGTGATGCCCTCAAGAAAACGGGAGCCCCCAACTTTCAGCGCCATGCAGTAAGGCTGAGGTTTACCCCACAGCGA-CCCCATCCAGCGCAAAACAAC--CAGTTGTGGGCCCCGCAGCCTATACCACTCGT---------------------TATCCTAGCCCTCGAGCCTTGGGTCTAGGAGACAGGGTCAGCCCTCACCAGGGTAAGGCTCATTCGTCCAGGACACCAGTCAGCGAGCACGCTTGGACCCCTAAAAGCAGACCCCAAATGCTGAGCATGGCAAGCTGA---TACAGAGACGTTGCCCCAGCCCGGACCACAGGTCCA-CGTGCCCCGAGGTCTGATGG-CAGCCATGCCCTGGCAACCCCAGAGGGACC---ACCAGGGGTATAGGAGCCCCAGC-CAGCCAGCATGCAGGTCCC-ACAAGACAAATGAGGGCCCAACCTCCAAGAGTGAAGGCCCCACACCGAGACCATCATAGAGCTGGGGGCACAAGAAGCTTTGGCGCCCCCTCCCTAGTGGACACTGTGGGAAGCCAGCCATCAATCCCAGCAAGTCCTGACACTTGGGGCCCAGGAGCTACTGGGCAGCCTTCAGCTGAGCACACTGGACAATTCACCACCTGGGCCTCAGTGGGGTGGCCACTCCTAGCCTTA a score=91.0 s hg17.chr7_random 653899 1 + 778964 A s rn3.chr12 30453928 1 - 46649226 A a score=54251.0 s hg17.chr7_random 653900 189 + 778964 CCCCATC-------------------------------------------------------------------CATGCCCACTCACAGG------------------------------CACAGAGTCTGAGGCTC--TGGGGCCCATCTCCTC---GCCAGGTTGACAGCCGCCTCCATCCGCA--GCGGCAGGACCGGTCTCTTG-----------------GCTGAGCCTCCAAAATGGGCCTCCTGTTCCCTCTGACCTT-TGTCCC--CTCAGCCAAAGCCCCCTGGGTCCAAAGCCGGATGTTTTC s panTro1.chr6_random 640935 189 - 67355074 CCCCATC-------------------------------------------------------------------CATGCCCACTCACAGG------------------------------CACAGAGTCTGAGGCTC--TGGGGCCCATCTCCTC---GCCAGGTTGACAGCCGCCTCCATCCGCA--GCGGCAGGACTGGCCTCTTG-----------------GCTCAGCCTCCAAAATGGGCCTCCTGTTCCCTCTGACCTT-TGTCCC--CTCAGCCAAAGCCCCCTGTGTCCAAAGCCGGATGTTTTC s mm5.chr5 136387144 172 + 149219885 CCTCACC-------------------------------------------------------------------CCTGCTGAC---------------------------------------CAGAGTCTGGGACTT--TTGGGTCCATCTCCCTCCATCCAGGTCAGCAACAGCCTCCACCCCAAATGCTGCAGGCCTG------------------------------GCATCCACAATGGGGCTCCTGTTCCA-CTGACCTTCTGTCCC--TTCGGCCAGAGCCTGCAGTGTCTGGGGCCGGATGTCCCC s rn3.chr12 30453929 173 - 46649226 CCCCACC-------------------------------------------------------------------CCTGCTGACC--------------------------------------CAGAGTCTGGGACTT--TTAGGTCCATCTCCCTCCACGCAGGTTAGCACCAGCCTCCACCCCAAATACTACAGG------------------------------CTTGGCATCCACAATAGGGCTCCTGTTCCA-CTGCTTCTCTGTCCC--TCCTGCCAGAGCCTGCAGTGTCTGGAGCTGGATGTCCCC s canFam1.chrUn 1746675 299 + 91062872 CCTCACCTTCTCTGTGACCAAAGGGCCATAAACCACAACACTGGGCAGGTGTCCACCCTGGGCGAGACCGCGCACCTGCCCAGCCACAGGGGCCCCAGCAGGCCCCCAGCACACCTCAGACACCCAGCCCAGGACTCCACAAGGCCCATCACCCT---GCT----------CAGCCTCAGCCCCAG-TGGAGCAGGGACAGCTTCCTGGGCAGGCGTGGGGGCCAGGCTGGCCTCCACAATGGACCTCCTGTTCCCACTGACCTTTTGTCCCTTCTCGGCCAAAACCCCCAGTGTCTGGGGCCGGATGTTTTC a score=6451.0 s hg17.chr7_random 654089 25 + 778964 -CTCCAACCCTCGGATGGGTGGGCAG s mm5.chr5 136387316 20 + 149219885 -TCCTAGCTC-----TGGGTGGGCGG s rn3.chr12 30454102 20 - 46649226 -TCCTAGCTC-----TGGGTGGGCAG s canFam1.chrUn 1746974 26 + 91062872 CTGCCAACCCTCTGATGGGTGGGCAG a score=1537.0 s hg17.chr7_random 654114 157 + 778964 GGAGAAGACGCCTCCCAGAAG---CGGGAACATGAAGGGGGCCTGGGTCTGAGGAGGTGGGAACTGGGCCGCCAGGCTCT-GCTGCAGGAC-ACAGCC---CTGAGGCCTTA---GGAC----ACCCTGTCCCGGCAGATG-AGACCCAGAGGGAGAGCCCTGGTCCTGGCTC s canFam1.chrUn 1747000 155 + 91062872 GGAAAAGGAG-------GAAGGGTCTGAGAAGAGCAGGGCGCC---------GGACATGGAAGC-AGGCCACTGGGTTCCAGCTGCAGGACTAAAGCCCCTCTGTCCCCTCGGGTGGACCATGACCCCGTCTGAGCAGACGAAGGCCTGTGGGGGGAGCCCTGG-CCTCACGC a score=20268.0 s hg17.chr7_random 654271 189 + 778964 TACCA-CTGCACAG-------------------AGCAAAGCAGGGGCCACTCCCA-GCGGGGAACTGGCCCTCACCCCCAACACTGCACTGGCCAGAGGGTGCTGGAAGCCTCTAGACCCCACCCAGCCTCCTCAGG--GGGCCGGGGGAGGGAGA----GAACACTGCCCTGTAGGGCCAAGCCCT-CCTATCCTCACCCCATGACAGGCCAGGGT s panTro1.chr6_random 641314 189 - 67355074 TACCA-CTGCAAAG-------------------AGCAAAGCAGGGGCCACTCCCG-GCGGGGAACTGGCCCTCACCCCCAACACTGCACTGGCCAGAGGGTGCTGGAAGCCTCTAGACCCCACCCAGCCTCCTCAGG--GGGCCGGGGGAGGGAGA----GAACACTGCCCTGTAGGGCCAAGCCCT-CCTATCCTCACCCCATGACAGGCCACGGT s canFam1.chrUn 1747155 189 + 91062872 CACCATCTGCTGAGCCCTTTGGGCCTGTGCCCAAGACAGACATGGGCCCCTCCTATGACAGGGCCTGGTCCCAACCC----CACCGCCT----------GTGCTGGA---------ACCCCGCTCA-CCCACTCAGGGTGGGCCAGGAAGAGAGGATCGTGGACAACCCC----AGGACCGGACACTCCCCAGTCCTTCCCCATGGGAGGCAGAGGT a score=6602.0 s hg17.chr7_random 654460 68 + 778964 GGGAAGGGCAGGGGCTGCACAAGGCTGAGCCATGGGCTGAGAGCCTCTCCCCGTACCTCCAAGCCTCC s panTro1.chr6_random 641503 68 - 67355074 GGGAAGGGCAGGGGCTGCACAAGGCTGAGCCATGGGCTGAGAGCCTCTCCCCGTACCTCCAAGCCTCC a score=77922.0 s hg17.chr7_random 654528 717 + 778964 CCCAGCACCCA------GAACTGACAT---GAGAATCTCTA-----------ATGAGAACAAGACCACAGGCATCCCGGA--CTCAGAGCTCACAAGGGCCTC---CAAAATATAACCAGGGAGGATGCCAAGGCCCACCGAAAGGCAGAAACTGC----GCCCCAGGGAGGCACACAGGACAGAGG---------GGATGGTGCTGGGCTCATGCCAGGGGGGCTCATGCC------------AGGGGG-----------------ACCCAGCCACACCTGGA----CCTGGAGGCCTGAGTT----AGGCCCTCCCCTCCCCTCC-----TTCCCTGACCCCCCGGCGGTAAATATCCTGAGGACAGAAG--AGTGCCGCAGACAAGCACTCCCAGGGCCCTGGAAAAATCTTGGGGCTTCAAAAGGGGAGTGAGTGGCCTTGGAGATC-CCGGGTAGTAAGATGTGGAATCTGCTTACTCAATACCCAGCACCTCAGAGGACCAAGTCCCCAGAGGCCAAGATAAGTCCCAGTTATGGGTCTAAAGTGCC----CGGTCGTGTGACGAGGAAACGACCCGGCTGGCTGCAAAGTCCTT--CCCGGAGAACCTTCTCCCCGCCGCCCCATCTCCCTCCGGGGCCTAGGAGTCACAACAGTGGGGGGCG---GGGGTGTGAAATAATTCTTTTCTAAAGTTAAAGAATGGTTACTAATGTAGCCCCAAAACTTAAATCCTCAAACATCATTTCAGTGACCCCATATTCCAGGAAAAGCAGGCTCAGCTGTCACCAAATCCTCAGCTGA s panTro1.chr6_random 641571 739 - 67355074 CCCAGCACCCA------GAACTGACAT---GAGCATCTCTA-----------ATGAGAACAAGACCACAGGCATCCCGGA--CTCAGAGCTCACAAGGGCCTC---CAAAATATAACCAGGGAGGACGCCGAGGCCCACCACAAGGCAGAAACTGC----GCCCCAGGGAGGCACACAGGACAGAGG---------GGATGGTGCTGGGCTCATGCCAGGGGGGCTCATGCC------------AGGGGGTCTCATGCCAGGG--GGGCCCAGCCACACCTGGA----CCTGGAGGCCCGAGTT----AGGccctcccctcccctcccctccTTCCCTGACCCCC-GGCGGTAAATATCCTGAGGACAGAAG--AGTGCCGCAGACAAGCACTCGCAGGGCCCTGGAAAAATCTTGGGGCTTCAAAAGGGGAGTGAGTGGCCTTGGAGATC-CCGGGTAGTAAGATGTGGAATCTGCTTACTCAATACCCAGCACCTCAGAGGACCAAGTCCCCAGAGGCCAAGATAAGTCCCAGTTATGGGTCTAAAGTGCCTGGTCGGTCGTGTGACGAGGAAACGACCCGGCTGGCTGCAAAGTCCTT--CCCGGAGAAACTTCTCCCC-CCGCCCCATCTCCCTCCGGGGCCTGGGAGTCACAACAGTGGGGGGCG---GGGGCGTGAAATAATTCTTTTCTAAAGTTAAAGAATGGTTACTAATGTAGCCCCAAAACTTAAATCCTCAAACATCATTTCAGTGACCCCATATTCCAGGAAAAGCAGGCTCAGCTGTCACCAAATCCTCAGCTGA s canFam1.chrUn 1747401 698 + 91062872 CACAGCGCCCAAGTGTGGGACTGTCACCCAGAGCGCCACCACCCCCACGCCCAAGAAGGAAAGATCTCAGGGGT-CTGGATTCTTGGGGCTCACGAGACCCCCTCACAACATACCGTAAGCGAGGACATGGAGACCCAAGGGAA-GCAGAGCCGGCCAGGGTCCC---GCAGCAGGCAGCAGAGAAGTCTTGGCACGGAAGGCACAGCCCTGTCCCCTTGGGTCTCCATGTCCCTCTTTAACAAAGCGTG--------CGGAGCTGGACCCAGTGCGAGGTGAGGGACCCCAGCAGCATGAAGTCAGGAGGCCCACGCCTGCC---------------------------------------AAGGCAAGAGCCAGCGCCCCGGGCAAGTGC-AGAAGAGCACTGGGATCCTC----GGCTTC---AGGGCAGTG-TCCACCGTGGAGATCACAGGGCAGCACGCCGTGGAATCTGCTTACTCAATGCCCCAAGTGCTCGAGGACCAAGTCCCCGGAGGTCAGGTGGAG-CCGGGTTACGGGTCTAACATGCC----TTCTCACGTGAC-CGACTGTGTCCCAGCCAGCTACACAGTCCTTAACTAGGATAACCT--------CCCCTGCACTTCACTCCGTGGCC-AGGAGCCTGGACAGCAGCGGGCACTCGGGATCTGAAATAA------TCTCCAGTCGAGGAAGGGCTTCTGGTGCACCCCCAGAACCT---TCC--------------------------TTCTGGGAGGAATGGACACACCTGCCACTGGAAGCTCAGCTGA a score=21214.0 s hg17.chr7_random 655245 251 + 778964 cttgagcccagggggtccagagcaggctgggcaacacagcgagatccccgactctgcaaagaatttaaaaattagccaggcatggtggcatgcacctgtagcattcaggaggcttaggtgggaggatagcttcagcctgggagtccgaggctgcagcaaaccatgatcgcaccaccacactccagcctgggcaacagagcaagaagctgtcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaTTCTCAGCT s panTro1.chr6_random 642310 242 - 67355074 cttgagcccagggggtccagagcaggctgggcaacacagcgagatccccgactctgcaaagaatttaaaaattagccaggcatggtggcatgcacctgtagcattcaggaggcttaggtgggaggatagcttcagcctgggagtctgaggctgcagcaaaccacgatcgcaccaccacactccagcctgggcaacacagcaagacgctgtc---------aaaaaaaaaaaaaaaaaCAAGGTCCTCAGCT a score=46091.0 s hg17.chr7_random 655496 430 + 778964 GAGGCCAAGCCAGGAGGCTCTGAGTCAAAGCAACAGCCTCCTGGACTAGGGGCCGCACCCGCCTGTGCCC-ACTGCTCAAACTCATGGGTCCTGCAGGTCAGGTGGGAGCATCAACAGCACTTTAACCCAACTGAAGCCAGTTTCCAGGGAGAAGAGCCCTAAGAGAGCCCATCCCTCCCAGATGGGAGCCCCAGGGAGGTGCCAGCCCCAGCCAGGCCTCACAGAAGCTAGAAGATACCTTAGACACTCACCCTGCAACCCCATCC---CGAAAACGGGAGACTGATGCCCCAACAGGCAGGAAACCTCCCTTGCAAACAAGATGGCAGCAGCCTCGGCTCTCCCAGAAGGGCCAGGCCCTGCCTCAGAc--ccattgcacaggtgaggaaaatgaggccagagaggCGCAAACACAGGCCAAAGCCAGCCCACC s panTro1.chr6_random 642552 419 - 67355074 GAGGCCAAGCCAGGAGGCTCTGAGTCAAAGCAACAGCCTCCTGGACTAGGGGCCGCACCCGCCTGCGCCC-GCTGCTCAAACTCATGGGTCCTGCAGGTCAGGTGGGAGCATCAACAGCACTTTAACCCAACTGAAGCCAGTTTCCAGGGAGAAGAGCCC-----------ATCCCTCCCAGATGGGAGCCCCAGGGAGGTGCCAGCCCCAGCCAGGCCTCACAGAAGCTAGAAGATACCTTAGACACTTACCCTGCAACCCCATCC---CGAAAACGGGAGACTGATGCCCCAACAGGCAGGAAACCTCCCTTGCAAACAAGATGGCAGCAGCCTCGGCTCTCTCAGAAGGGCCAGGCCCTGCCTCAGAC--CCATTGCACAGGTGAGGAAAATGAGGCCAGAGAGGCGCAAACACAGGCCAAAGCCAGCCCACC s canFam1.chrUn 1748099 312 + 91062872 GTGGGCAGGCCATG---------------------GCCATCTCCACGAG-----------ATCAGTGCCCTGCTGTCTAAATCCATGGCCC---------------AGGGATATGTAGGACTGTAAGCTGCCCAGAGCCAGCTTCCAGGGAGGGCAGCCCCAG--------GACACTCCTG--------------------------CCCAACCACGTGTCAGAGAAGCC--AAGATGCTCTGGACA-TCTCCCTCCTGCCCTATCCTTTTGGAAGCAGGA----------------------AGAGCCCCCCTTCAAACA----GGGGTCAGCTT--------------GGGACCAGCACAGGCCTAGACATCCATTTCACAGATGGGCCAAGTGAGGCCAGAGGGGAGCAGACCCATACCCTAGGAACCCCTCC a score=132351.0 s hg17.chr7_random 655926 1473 + 778964 CAGGGCGCTGCATCCTGCAGGTCTCTGGGCACACTTCCCTGAAAGCAGGGAGAAGGGGCCCAGCCATG-------AGCCCCAGGGCCTCAGCAACGCAAGAAGACCTTCAGCAAGTTCACCCGGGTGCTGTTCCTCCCCCAGCGCAACCCCAGGGAGGAAGGCCCTGCTGTGGCAGGAACGCCAGCAcccccaggattcttacgctgaaatcccagatgaaggggacggcgttaggaggtggggtgtcttaaggtagccattaagtccttttttctcttttttttcttagagacggagtcttgctctactgtccaggctggaatgcagtgatgccatcacagctcactgcagcctcaacctcccgactcaagggatcctcccacctcagcctccagagtagctgggacgacaggcacttgccaccacgcctggctaatttttgtatttcttgtagagatggggtcctgccatgttacccaggctggtcttgaactcctaggctcagcgatcctccagcctcagccttccacggtggctgggactgcaggtgtgagccacctcgcctggcccgattagtttctagggtagaggcttcatgaatggaattagtgcccttcgaaagcagcctagggagcatgttcatcccccgcccctcacactgatggcagagcgagaaggtgtcatctatgaacccagaaaacacggctccagcggagacacagtctgccggcgccctgatcttggacttccagcctccagaactttgagaaatacatttgttgctaatcagctcctagtggatggaattctgctaaagcagcctgaaGAAGGCAGGCACCACCCCCAACTTAAAGAAAGAGGGGCTCACCCTGGGATTCTATGGAAGGAAGTCTGCTGTCTGGCCTCGAGCCCACCCCAAGCACTCCTTCTCCTTCTCCTGGGCTGCTTTAGGGGGGAAGCCGGGGGGGCCCTCCAAAGGTCAGGCACTTCAAAAGGCAATGCAGGCTCTGAATATCCACCCCCTACTCCTCCTGCCATGCACCTCGGCCCCCACTGAAGAGCCCGCACAGGACCCTCCAGGGCCCGGGGACGCCAGACAGCTTCCGGCTAAGCAGCTCGACACCTCGCAAGGCCCAAAACGGCCCCCGCACTGTGGTCTAGGGCGTGGAAAGGAGGCCAGGCTCGTCGCCAGAGCAGCAGAGCAGAAGCCCCGGCCGGCCCTGCCTTTCCCGCACCCCCAGGTGCTCCTTCTCCTCCCTGGGCCTCAGTGTACCTGCCAGGGAGATGGGAGCGCAGCCGTGCACCCCCACCAGCCACACCAGGGGCACCTTGTGGCCTCCCAGGAGGGACCCTGGCAACCCAGTAGGGGCGACCCTCAGGCCTGCGTGGGGCAGGGCTCACCTGGATGCTGCAGTGTTGGATGCGTGAGGGACCCTGGCTGCTTGGTAGGGGCGGCCCCGGGCTCGGGTGGGGAGGGGA s panTro1.chr6_random 642971 1471 - 67355074 CAAGGCGCTGCATCCTGCAGGTCTC--GGCACACTTCCCTGAAAGCAGGGAGAAGGGGCCCCGCCATGCAGCCCTGGCCCCAGGGCCTCAGCAACGCAAGAAGACCTTCAGCAAGTTCACCCGGGTGCCGTGCCTCCCCCAGCGCAACCCCAGGGAGGAAGGCCCTGCTGTGGCAGGAACGCCAGCGcccccaggattcttacgctgaaatcccagatcaaggggatggcgttaggaggtggggtgtcttcaggtagccattaagtcctttcttctcttttttttcttagag------tcttgctttactgtccaggctggaatacagtgatgccatcacagctcactgcagcctcaacctcccgactcaagggatcctcccacctcagcctccagagtagctgggacgacaggcacgtgccaccacgcccagctaattttagtatttcttgtagagatggggtcctgccatgttacccaggctggtcttgaactgctaggctcagcgatcctccagcctcagccttccacggtggctgggactgcaggtgtgagccacctcgcctggcccgattagtttctggggtagaggcttcatgaatggaattagtgcccttcgaaagcagcctagggagcatgttcatcccccgcccctcacactgatggcagagcgagaaggcgtcatctatgaacccagaaaacacggctccagcagagacacagtctgccggcaccctgatcttggacttccagcctccagaactttgagaaatacatttgttgctaatcagctcctagtggatggaattctgctaaagcagcctgaaGAAGGCAGGCCCCACCCCCAACTTAAAGAAAGAGGGGCTCACCCTGGGATTCTATGGAGGGAAGTCTGCTGTCTGGCGTCGAGCCCACCCCAAGCACTCCTTCTCCTTCTCCTGGGCTGCTTTAGGGGGGAAGCCCGGGGGGCCCTCCAAAGGTCAGGTGCTTCAAGAGGCAATGCAGGCTCTGAATGTCCACCCCCTACTCCTCCTGCCATGCTCCTCGACCCCCACTGAAGAGCCTGCACAGGACCCTCCGGGACCCGGGGACGCCAGACAGCTTCCGGCTAAGCAGCTCGACACCTCGCAAGGCCCAAAACGGCCCCTGCACTGTGGTCTAGAGCGTGGAAAGGAGGCCAGGCTCATCGCCAGAGCAGCAGAGCAGAAGCCCCGGCCGGCCCTGCCTTTCCCGCACCCCCAGGTGCTCCTTCTCCTCCCTGGGCCTCAGTGTATCTGCCAGGGAGATGGGAGCGCAGCCGTGCACCCCCACCAGCCACGCCAGGGGCACCTTGTGGCCTCCCAGGAGGGACCCTGGCAACCCAGTAGGGGCAACCCTCAGGCCTGCGTGGGGCAGGGCTCACCTGGATACTGCGGTGTTGGATGCGTGAGGGACCCTGGCTGCTTGGTAGGGGCGGCCCTGGGCTC-GGCGGAGGGGGGA a score=676.0 s hg17.chr7_random 657399 4 + 778964 GGGG s panTro1.chr6_random 644442 4 - 67355074 GGGG s mm5.chr5 136389589 4 + 149219885 GAGA a score=1598.0 s hg17.chr7_random 657403 7 + 778964 AGGGGCA s panTro1.chr6_random 644446 6 - 67355074 A-GGGCA s mm5.chr5 136389593 7 + 149219885 AAGGGCT s rn3.chr12 30456254 7 - 46649226 AGGGGCA a score=32429.0 s hg17.chr7_random 657410 46 + 778964 GGGCTCACCTTGACGCTGCGGTGGTGGACGCGGGAGGGACCCTGGC s panTro1.chr6_random 644452 46 - 67355074 GGGCTCACCTTGACGCTGCGGTGGTGGATGCGGGAGGGACCCTGGC s mm5.chr5 136389600 43 + 149219885 GGGCTCACCTTGACACTGCGGTGGTGGACCCGTGAAGG---CTGGC s rn3.chr12 30456261 43 - 46649226 GGACTCACCTTGACACTGCGGTGGTGGACCCTTGAGGG---CTGGC s canFam1.chrUn 1749128 43 + 91062872 GGGCTCACCTTGACGCTGCGGTGATGGATGCGGGAAGG---CTGGC a score=4459.0 s hg17.chr7_random 657456 51 + 778964 TGCTAGGTAGGGGCGGCCCTTGGGCTCgggtggggaggggaggggagggga s panTro1.chr6_random 644498 51 - 67355074 TGCTAGGTAGGGGCAGCCCTTGGGCTCAGGTGGGGAGGGGAAGGGAGGAGA a score=1993.0 s hg17.chr7_random 657988 123 + 778964 CACTGTGGAATTTGGGCTGAGCCTGGCCTTCTGCTCCAAGCTATTTGCAAAGGGGTTTCCAGCCTTGGATCCCTAAAGGCTGCCAGAGAGAGGCTCCTGTGGTTCCCTGGGACAAGGAGACCT s canFam1.chrUn 1727337 85 + 91062872 CGCTGTGGAATCTGGGCTGC-CCTGGAGCACAGCACAGAG----------AAGGGTTTTCAGCCTTGGATTTCCAAGGGCCA---------------------------GGACAACAGGAGCC a score=1637.0 s hg17.chr7_random 658111 80 + 778964 CCTTCATCCTCCATGCCTGTTTCTCAGACAGTGAAGACAAGGCACAAATGTGTGCTTTGGAGGTGGCTGAGGGGCTCAGA s mm5.chr7 12671347 80 - 133051633 CTTTAATTCTCTAAGCCTGTCAGTCCCCCACTGAAGACAAGGTGCAAGTATCTGCATCTGAGGTGGCCTCAGAGCCCAGA s canFam1.chrUn 1727422 50 + 91062872 CTTCCAGGCCCCCTGTCCATCTCCCAGGCATCACTGAGAAGGTGCTGGGA------------------------------ a score=1306.0 s hg17.chr7_random 658191 198 + 778964 CACTGCAGTGTGCAGGCGCCTGCCAGGC--CTGATGTGGTGATGCTCGCTCAGGGCCT-CTAGGGCAACCCAGGGTCATGTTTGATTTGACGAAGG--GGTTAAGTGC--GCTGCTCTTTAAAAGCCGGAACACAGACAATGTGAAGCTTCCTCCCTCAGACCCACCACATTGGTGGG-------CTTTACTTCAGCCCTAGGGACTCCTTC s canFam1.chrUn 1727472 180 + 91062872 TAGGCCCGTGTGGGGGCAACCTCAAGGTGTCTGGGGAGGGGA-ATGTGCCCAGCCCCTGCTGCCGCCCCCCAGGGTTGGGGTGTGTTTGTGGGACACAGGCTAAGTGCTGGCTGCTCTTTAAAAGCCAGAACAGCGAT-------------------------CACCGC--TGGGGGGGTCCGCCCTCTGCCCAAGACCTGGGGGCTC---- a score=100.0 s hg17.chr7_random 658388 1 + 778964 C s rn3.chr12 30436150 1 - 46649226 C a score=21916.0 s hg17.chr7_random 658389 193 + 778964 TGTCCCCTCACCCCTCTCAACTCCAACCCCCCCTCCCCAGACTGCAGAGAGGGGCCGGTTCTTGCCAGAGTCGCTCTTAGC-CGTTTTGTGA-----------AAAATCCATTTATTGTCTTCATTGCTTGGGAAGTTATAATCTTGAGGCTGCAGCTTCCTAAGGCGTTGCCATGGAGATGAATTTTCTGTCATAAATAAAAGT s rn3.chr12 30436151 188 - 46649226 TATGCCCTCACCCCTTATGTTCTGGGTCCCCTC---CTATACTGCAGAGAGGGGCAGA----------ATTCGCTCTCAGC-TGTTTTGGGATTGGGGGGGGGCGGATCC--TGATTGTCTTTCCTGCTTGGGAAGTTATGATCT-GAGGCTGCAGCTTCCTAAGGTGTTGCCATGGAGACGGATTTTCTGTCATAAATAAAAGT s canFam1.chrUn 1727652 169 + 91062872 TGCGGCCTCCCCCCT-----------CCCCTCC---CTACGATGCC-----------CTTCACGCTGGAGTCACTCTTGCCATTTTTTGTGA-----------AAAATCCATTTATTGTCTTCATTGCTCAGAGAGCTATCATCTCCAGGCTGCGGCTTCCGAAGGCGTTGCCATGGAGATGAATTTTCTGTCATAAATAAAAGT a score=152732.0 s hg17.chr7_random 658582 721 + 778964 ATTCTGGGGTCAGGAGATCTCAAGCATAACTAGGACAGATTTTGAGGGGGAAAATGCAAGAATTTCAGAAGCACATGA---GATGATTTG---GGC-TGC-CTTTTCCGGAGGGTGTTTTTTAGGCTGTCCTGAATTTGGC-----------------CTCTAGATGTGGGACC-GTCCCTCTGCCGTACCC-------CCAACCCCGTTCCCCCAAGCC--GACACTGTGTCTG-----CCTG----------C-CCCTCCCCTCCTCCACCT--G------CTCAG--------GG-----CCAGAGCCTTGGGGGACCT----GGTTTGGAAATCCAGGTTGG---------------GGTGACGTCTGGGGTCACCCA------AAGACGGGCT---GGCTCCCAGTGTGTCCTCAGAC-AAG--CCTTTCTGTCCCTGGCCCTAGA-CCCTGCCTGGGTGAGGGCCTCATTCACTCAGCCTAGGATTTTTGGAACATTCCTCACACGCCTCCTACGGGCCAGGGCTCACTCAGGTATTTCCCCTTGGGCTTGGGGCAGGCAGGGGGACACTCCCACTCCCGCATGACCCCTGCTTCCGAGG-------------GCCCTGACCCCACCCCCACTCTT-------GCTCACTTCCCACCAGCCCCCATGGACATTAGCTTTAGGGATTTCCTTTTGTTCAGGGTCGCTGCAGGTCTGTGTTCGAGAAGGTGGGGGAGGCGGGACTGGAGCCCGGGAGGAAGGTATGCAGGGCTGAGGGGCCTCTGGAAGCCACCCAAGCCGACA----GCCTCCGCCAGCAGTCAAGGGCTGTTTGCCAACCCCC s panTro1.chr6_random 570775 721 - 67355074 ATTCTGGGGTCAGGAGATCTCAAGCATAACTAGGACAGATTTTGAGGGGGAAAATGCCAGAATTTCAGAAGCACATGA---GATGATTTG---GGC-TGC-CTTTTCCGGAGGGTGTTTTTCAGGCTGTCCTGAATTTGGC-----------------CTCTAGATGTGGGACC-GTCCCTCTGCCGTACCC-------CCAACCCCATTCCCCCCAGCC--GACACTGTGTCTG-----CCTG----------C-CCCTCCCCTCCTCCACCT--G------CTCAG--------GG-----CCAGAGCCTTGGGGGACCT----GGTTTGGAAATCCAGGTTGG---------------GGTGACGTCTGGGGTCACCCA------AAGACGGGCT---GGCTCCCAGTGTGTCCTCAGAC-TAG--CCTTTCTGTCCCTGGCCCTAGA-CCCTGCCTGGGTGAGGGCCTCATTCATTCAGCCTAGGATTTTTGGAACATTCCTCACACGCCTCCTACGGGCCAGGGCTCACTCAGGTATTTCCCCTTGGGCTTGGGGCGGGCAGGGGGACACTCCCACTCCCGCATGACCCCCGCTTCCGAGG-------------GCCCTGACCCCACCCCCACTCTT-------GCTCACTTCCCACCAGCCCCCATGGACGTTAGCTTTAGGGATTTCCTTTTGTTCAGGGTTGCTGCAGGTCAGTGTTCGGGAAGGTGGGGGAGGCGGGACTGGAGCCCGGGAGGAAGGTATGCAGGGCTGAGGGGCCTCTGGAAGCCACCCAAGCCGACA----GCCTCCGCCAGCAGTCAAGGGCTGTTTGCCAACCCCC s rn3.chr12 30436339 706 - 46649226 GTTCTGGGGTCAGGAGCTCTCAAGCATAACTAGGCCAGATTTTGAGGGGGGAAATGCCAGAATTCCA-AGACACATCA---GAGGATGCGCCAGGCAAGC-TCTTCCCTGAGGCTGTCCTTCAGGGTGTTGTGCAAGTGGC-------------------------ACAGAAGA-ATCCCTCT----------------------CCGCTTCCTACAGC-----------ACCTGC----CCTG----------CTCCCTCCCCTCCTCCACCTAAA------TCCAGACTATGCTGT-----CCGGTGAGATCGGGGACCT----------CAAAAAAGGGTTAGCTCCTAGGGGCTCCTGCTGTCCTCTGGAATCCCCCA------CGGCTGTGCT-----------GTGTATCCTCAGAC-CAGTCCCTGCCTGTCTCTGGCCCCGGA-CCCTGCCTGGACCGGAGCC-------CTCCCTGCAGGCTTCTCGGTGCATTCCTCTGGCACCTCTCCAGTGGCAAAGATAGCTCAGGAA--------TGAGCTGGGAGCAGGGCAAGGGACCCTCCAGCT--GGCATGCTGGTCTCTTCTGCGGCTTGACATCCCCCACCCCAATCCCACCCCCAAGCCTCTACCAGGCTGTTTTCCCACCAGCCCT--TGGAAGTTTGCTTTAGGGATTTCCTTCCGTTGGGGGTCACCGCCAGGCAGTGTTTAAAAAGGT---GGAGAGGGGCCTGCACCCTGCAAGGAAGGTATGCAGGTCTGAGGGGCCCCTGGACGCCACCCAGGCTTCTGT---GCGGTGGCTAGCTGCCCAGGGCTGTTTGCCAATCGCC s canFam1.chrUn 1727821 728 + 91062872 ATTCTGGGGTCAGGAGATCTCAAGCATAACTAGGACAGATTTTGAGGGGG-AAATGCCAGAATTTTTTAAGCACATGAGATGATGATTCG---GGC-TGCTTTTTTCCAGAGGGTGTTTTTTGGGCTGTTTTGAATCTGGCACGGGTGCCCAGCCCACCTTCAAAAGTGGGGTCTATCCCTCCGCTGCCCCCAGTCGGGCTCTGCCTCTTTCTCCTGGCCATGGGCTGGGGCCTGCATGACCTGGCGGGAAATCC-CATTCCTGTGCTCAGGCT--GGGGGCTCCCAG--------GGGCCCCCCAGGCCCCAGGAAGAGCCCACAGTGTCATGGGCTCAGGCTGG---------------GG-GCTCCCAGGGGTCCCCCAGGCCCCAAGATGAGCCCATGGTGCT--GCATGTCCTCACACACAG--CCTCC---TCTCTGGCCCTGAAGCTGCGGCTGG----------------CTCACCCTA-GATTCCTGGCACATTCCTCAGG---CTCTCAGAGGCCTCGGTCTTCTCAGGTGTTTCCCTGAGAGCTCAGGGCCAGAGAAGGTGC-----------CAGAGGGTGTGC-CTTCCGAGG-------------GC----ACTCCCCCCCCAA-----------GCTCACTTCCCACCAGCCCCC-TGGAAGTTAGCTTTAGGGATTTCCTG-TGTTCAGGGTCACTGAAGGTCAGTGTTTGAGGAGGTGGGGG--------------------AGGAAGGTATGCAGGGCTGAGGGGCCTCTAGCCGCCACCCAGGCAGACAGACAGCACAGGCCTGCAGCCAAGGGCTGTTTGCCAACCCCC a score=16440.0 s hg17.chr7_random 659303 115 + 778964 ATG------------CACCCCCT------CATTAGGTAAACACAGAGTCCTCCATCAGCACAG---GGCCCCAGAGCCATCCCTT-GCACAGAGGCCCCAGGGTCCCCCGCGCTCG--AGGGCCCCCCATGACCCTGGG s panTro1.chr6_random 571496 115 - 67355074 ATG------------CACCCCCT------CATTAGGTAAACACAGAGTCCTCCATCAGCACAG---GGCCCCAGAGCCATCCCTT-GCACAGAGGCCCCGGGGTCCCCCGCGCTCG--AGGGCCCCCCATGACCCTGGG s rn3.chr12 30437045 137 - 46649226 CTGCCCCCATCCTCTCACCCCCTACCCTCTATTAGGTAA--ACAGACTCCTCACTAGCTGCAGGTAGGGCTCAGTGCCATCCCTTCACAAAGAGGCCCTGGGGTCCTGAGCAGTTGCCAGGTACCCCCATTTCCCTAAG a score=274968.0 s hg17.chr7_random 659418 2997 + 778964 ACTGGGACTGCGGCACCCTGGGCCTCTCCTCCCAGCCCC--GAGGCTCTCACTGGAGGACCCATCTTCCAAGGCTGCCACAATCCCAGGAGGCGGCTCCAGCCCCAGTAGCTCCAAAAAAACGAATGGAGAGGTGAGGAGGGAGAGAACAAAAGAAAGGAGGGAATGAAGGAGGGAGGAGGCTACGGGGTGAACCCTTTGCAGTTTGGACCTCAGACTGTGGTCCCCTCACCTACCTCCCCGGACAGCACCACCCTCCCTTCCCACCTTTGATGGGTCCCTGTCCCAGGAGAAAGCCCATAGAGACATCACACGGGAAGATCCTGCAGGAAGCCCTTCCTCCCTTGCAAACACTCGCAAAAAACGGCCCTTGATCATGGAGAAACAGGCTTCCAGGGCCCCCAGGGGCTGGGGTCCACGGTTGCAGGCCAGCAAGCCACAGCTCCCAGGCTGGGGCTCTAGTGAGTCTAGCCTCCCCAAGACCCACTTCTGCCAGGGGTTCTCTGCCTCCTGATAAATAACTGTGACACTATCTGCCCACATCCCTTGCTGAGCAGCAAAATCAACACAGGACAGGCTGTGACTCGCCAGGCCACGAGGAGCTGCAGGACGTACACACTGCATCGCCATCTGTGGGGCTTGGACAGCCACAGGAGGGACATGGCCCCAGAAGCCTGGCAGGGCATCCCACTGCGAGGGCCCCTCAGTGCCAGCTCTCGTGGCCTCTCACCAAGTCTGGCCCCAGCCCAGCTTTCCATCGCCACAAGCTTGTGCAGTCCACACCCGCCACCAAGAAGGGCGCTGGGGGTTGGGGCCAATGCCAGGTGGGGCAGGGAGGGGACGCTGTGGGAGGGAGGGGTGGCTGAACAGGATAAGGGCCCTGGAATGCACGGCTCCACCCCTGGATGGCTGTGTCCTCGTCCACAGAACAGGGACAGGGCCGCAGAAGGGCACTGTCAGGAGGCGGGATCCCTGTACCCTGATGACTCCCGGGAAGCGGCAGAAATCACGGTCATGAAGGATTCGTAACCGGGGCAGGGCTCTTCTCAGAGCGGGAGAAACAGACAGCGTCCAAGGAGCACCCCACACTGTCCCAGCTGATAAATGAACACAGCTGCAGACCATAGCAGGGTCCTCAG-----------------TGAGTCCGAGCTCTCCTGACTCCGCGTCGGACTGAAGCATCCTCGAGGGTGTCTATATGAGCCtgtgtgtgagcttgtgtgtgaatgtgtgc----------------------------------------gtgcctgtgtgtgaatgtgtgtgcccgtgtgagcctatgtgagcctgcatgtgaatgtgtatgcctgtgtgtgaatgcatgtgcttgtgtgtgaggcgcgcttgtgtgtgaggcatgtgaatatgtgagcctgcatgtgcctgcatgagcctgcgtgtgcctgcgtgagcctgcgtgtgactgtgtatgcctgtgtgagcatgtgtgtgcgtgtgactccatgagcctgtgtgtgaatgtgtgagcctgcatgtgaatgcgtgtgcctacgtgagaatgcgtgagcctgt--------------------gtgtgaatgtgtgtccctgtgtgtggacctgcacgtgagtgagtgtgcctgcatgtgaatgcgtgtgaatgcatgagcctgtgtgtgaatgtgtgaacctgtatgtgaatgtgtgtgcctgtacgtgaatgtgtgtggtgctccatgtgtttttgtgtctatgtgtttgtctctgtgtgGCTGTAACTTTCTGTGACTCTCCAAAAaccctgattcaaaaccaaagacaccacaggaaaagaggactacagaacaatttcccacttaagcatggacacaaaaatccttaacaaatgattaacaagtagaatcaatataaaaagaaacgtatttaatgaccaaggtgggttaatctcagg-aatgcaaggttaatgtagcatttgaaaaact-aatcaatgtaattcacaataatagaattatgtaaaaaaaaatcacatggtaattttaacagatgcagaaaccatacaatgaaatgcaatagatgc-aaaaaaaatggacacaattcaacaacttttcatgatttaagaaaaacaaaaaaccctctcagaaaactaataggagaagcaaacctcctcaacttcattaaaggcatctacaaaacagctacagctaacatcttactcaatgttgaaaggctcattgctttctagctaataacaggaataaagcaagattgcccattctattgtcacttctatttgttctggaggtcccagccagtacaacaaggcaagaaaaagaaataaaaggcatacagaatgcaaaagaag-aaatacaacagttcttatttccagataacatgatcatgtatgtagaaaactcaaaggaatttcaaaagaattctactaaaactaataagtgaatttagcaaggttgcaggatctaaggacgatatacaaaaacaaattgaaattgaacaactagaccaaaga-tca--accagcaagtagaagacctggacaacatcatacaccaactcgatcttatgtgcatctacagaacactccattcaaccataaaggtatacacattctttttcttttggagatggagtctcgctctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcagcctccacctcccgggttcaagcgattctcgtgcctcagcctcctgagtagctgagattacaggcatgcccaaccatgcccggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtttcaaactcctgactcaagtgatccgcctgccttggcctcccaaagtgctgggattacaggtgtgagccactgcgcccatccagaaacacacattcttttcaagtgcacgtgaaacattctccaggatagaccatatgtttggccataaaagaagtctcaataaattcaaaataatgaaaatcataccaagtatgttctctgaccataatgaaataaaattagaaatcattaatagatg s panTro1.chr6_random 571611 3083 - 67355074 ACTGGGACTGCGGCACCCTGGGCCTCTCCTCCCAGCCCCCTGAGGCTCTCACTGGAGGACCCATCTTCCAAGGCTGCCACAATCCCAGGAGGCGGCTCCAGCCCCAGTAGCTCCAAAAAAACGAATGgggaggtgaggagggagagaacaaaagaaaggagggaatgaaggagggaggAGGCTACGGGGTGAACCCTTTGCAGTTTGGACCTCAGACTGTGGTCCCCTCACCTACCTCCCCGGACAGCACCACCCTCCCTTCCCACCTTTGATGGGTCCCTGTCCCAGGAGAAAGCCCATAGAGACATCACGCGGGAAGATCCTGCAGGAAGCCCTTCCTCCCTTGCAAACACTCGCAAAAAACGGCCCTTGATCATGGAGAAACAGGCTTCCAGGGCCCCCAGGGCCTGGGGTCCACGGTTGCAGGCCAGCAAGCCACAGCTCCCAGGCTGGGGCTCTAGTGAGTCTAGCCTCCCCAAGACCCACTTCTGCCAGGGGTTCTCTGCCTCCTGATAAATAACTGTGACACTATCTGCCCACACCCCTTGCTGAGCAGCAAAATCAACACGGGACAGGCTGTGACTCGCCAGGCCACGAGGAGCTGCAGGACGTACACACTGCATCGCCATCTGTGGGGCTTGGACAGCCACAGGAGGAACATGGCCCCAGGAGCCTGGCAGGGCATCCCACTGCGAGGGCCCCTCAGTGCCAGCTCTCGTGGCCTCTCACCAAGTCTGGCCCTAGCCCAGCGTTCCATCGCCACAAGCTTGTGCAGTCCACACCCGCCACCAAGAAGGGCGCTGGGGGTTGGGGCCAATGCCAGGTGGGGCGGGGAGGGGACGCTGTGGGAGGGAGGGGTGGCTGAACAGGATAAGGGCCCTGGAATGCACGGCTCCACCCCTGGATGGCTGTGTCCTCGTCCACAGAACAGGGACAGGGCCGCAGAAGGGCACTGTCAGGAGGCGGGATCCCTGTACCCTGATGAGTCCCGGGAAGCGGCAGAAATCACGGTCATGAAGGATTCGTAACCGAGGCAGGGCTCTTCTCAGAGCGGGAGAAACAGACAGCGTCCAAGGAGCACCCCACACTGTCCCAGCTGATAAATGAACACAGCTGCAGACCATAGCAGGGTCCTCAGGACCTGCAGACCTCAGCAGAGTCCGAGCTCTCCTGACTCCGCGTCGGACTGAAGCATCCTCGAGGGTGTCTATATGAGCCTGTATGTGAGCTtgtgtgtgaatgtgtgcgtgcctgtgtgtgaatgtgtgtgcctttgtgtgaatgtgtgtgcctgtgtgtgaatgtgtgtgcccgtgtgagcctatgtgagcctgcatgtgaatttgtatgcctgtgtgtgaatgcatgtgcttgtgtgtgaggcgcgcttgtgtgtgaggcatgtgaatatgtgagcctgcatgtgcctgcatgagcctgtgtgtgcctgcgtgagcctgcgtgtgactgtgtatgcctgtgtgagcatgtgtgtgcgtgtgactccatgagcctgtgtgtgaatgtgtgagcctgcatgtgaatgcgtgtgCCTACATGAGAATGCGTGAGCCTGTGTGCAAATGCATGTGCCtgcgtgtgaatgtgtgtgcctgtgtgtggacctgcacgtgagtgagtgtgcctgcatgtgaatgggtgtgaatgcatgagcctgtgtgtgaatgtgtgaacctgtatgtgaatgtgtgtgcctgtacgtgaatgtgtgtggtgctccatgtgtttttgtgtctatgtgtttgtctctgtgtgGCGGTAACTTTCTGTGACTCTCCAAAAaccctgattcaaaaccaaagacaccacaggaaaagaggactacagaacaatttcccacttaagcatggacacaaaaatccttaacaaatgattaacaagtagaatcaatataaaaagaaacatatttaatgaccaaggtgggttaatctcaggaaatgcaaggttaatgtagcatttgaaaaactaaatcaatgtaattcacaataatagaattatgtaaaaaaaaatcacatggtaattttaacagatgcagaaaccatacaatgaaatgcaatagatgcaaaaaaaaatggacacaattcaacaacttttcatgatttaagaaaaacaaaaaaccctctcagaaaactaataggagaagcaaacctcctcaacttcattaaaggcatctacaaaacagctacagctaacatcttactcaatgttgaaaggctcattgctttctagctaagaacaggaataaagcaagattgcccattcttttgtcgcttctatttgttctggaggtcccagccagtacaacaaggcaagaaaaagaaataaaaggcatacagaatgcaaaagaagaaaatacaacagttcttatttccagataacatgatcatgtatgtagaaaactcaaaggaatttcaaaagaattctactaaaactaataagtgaatttagcaaggttgcaggatctaaggacgatatacaaaaacaaattgaaattgaacaactagaccaaagattcatcaccagcaagtagaagacctggacaacatcatacaccaactcgatcttatgtgcatctacagaacactccattcgaccataaaggtatacacattctttttcttttggagatggagtctcgctctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcagcctccacctcccgggttcaagtgattctcgtgccccagcctcctgagtagctgagattacaggcatgcccaaccatgcccggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtttcaaactcctgactcaagtgatccgcctgccttggcctcccaaagtgctgggattacaggtgtgagccactgcgcccatccagaaacacacattcttttcaagtgcacgtgaaacattctccaggatagaccatatgtttggccataaaagaagtctcaataaattcaaaataatgaaaatcataccaagtatgttctctgaccataatgaaataaaattagaaatcattaatcgatg a score=42831.0 s hg17.chr7_random 662415 306 + 778964 aaaatttatgaaattcacaaatatgtggaaattaaacaacacactcctacat---------aaccaataagtcaaagaagacatcccagcgaa---aaccagaaaatactttgagatgaaagaaaactca-----acttaccaaagcttatgggatgcagcttaaaacagtgcttagagggacatttatagctagaaactcctaattttttaaaataaaaaaga---------aaagacgtcaaatcaataacttaatcttccatcttttaaaaaatgg--aaaaaaaaaccaaaccaaacccaaaacaagcagaaaaatgaaataacaaagat s panTro1.chr6_random 574694 308 - 67355074 aaaatttatgaaattcacaaatatgtggaaattaaacaatacactcctacat---------aaccaataagtcaaagaagacatcccagtgaa---aaccagaaaatactttgagatgaaagaaaactca-----acttaccaaagcctatgggatgcagcttaaaacagtgcttagagggacatttatagctagaaactcctaattttttaaaataaaaaaga---------aaagatgtcaaatcaataacttaatcttccatcttttaaaaaatggaaaaaaaaaaaccaaactaaacccaaaacaagcagaaaaatgaaataacaaagat s canFam1.chrUn 1729663 318 + 91062872 AGAAATCATGGTTTTGAAGaatatttaaaaactggaaggcac---tctacatcagtggaaaaaccatggacatacaaggagtactcgagggaaatgaacatgaaaatg-tttgaggtgaatgaacatgcaaatgcacacaccagaactcgtggagtgcagc-taaagccgtgcttggagggaaacccataactgcaaactcctacttcaaaaaaaaaaaaaaaagaaagaaagaaagatctcaaatcagcaactgaatcttctat-tttcagaaactgggacaagaagagccaactcaatc----------cgggggaatgacataacaaagat a score=8829.0 s hg17.chr7_random 662721 102 + 778964 tagagagctacttgaaaggctgaggcaggaggatcacgtgagcccagttcaagaccagcctgggcaacatagcaagactctgtctcaaaaaaaaaaaaatta s panTro1.chr6_random 575002 100 - 67355074 tagagagctacttgaaaggctgaggcaggaggatcacgtgagcccagttcaacaccagcctgggcaacatagcaagactctgtctc--aaaaaaaaaaatta a score=96947.0 s hg17.chr7_random 662823 660 + 778964 cgggggaaataaattttaaaaataaagagtagaaaaacaatagagaatattaacaaaaccaaaagttggttct-tgaaaaaaata---aaatagacaaaactttagctacactgaccaagaagtagacagaataatcaaattactaaactcaggaatgaaaagagggaacattagtatcagcctt-acagaaataaaaata---ataaaggaatgct-gtgaac-attgtgtgccaagaaattagataacctagatgaaatgaacaaattcctagaatcac-----------aaactgactcaagaaaaagaggcccgaagaaatatgaagacttat---agtaagcaaagagattgaattagt---------aatcaaaaaacttcctacaaagaaaagcccaggaccagatggcttcactggtgaatgctaccaaatatttaa-aaaggaattaacacaaatgcttcccaaactctttgaaaaaata-------------------gaagaggaaagaactcattct-gtgaagccagtcataacctgt-----caccaaaaccacacaaagacatcacaagaaaactacagactactatccctcatgtatagacacacaaaatttcaa-taaata-------------------aaaatattaaataaataaaatatta--aaaagccaaatccagc--------------------------------aacatacaaaaataat------------gactgtgctccatgaccaagtggga s panTro1.chr6_random 575102 660 - 67355074 cgggggaaataaattttaaaaataaagaatagaaaaacaatagagaatattaacaaaaccaaaagttggttct-tgaaaaaaata---aaatagacaaaactttagctacactgaccaagaagtagacagaataatcaaattactaaactcaggaatgaaaagagggaacattagtatcagcctt-acagaaataaaaata---ataaaggaatgct-gtgaac-attgtgtgccaagaaattagataacctagatgaaatgaacaaattcctagaatcac-----------aaactgactcaagaaaaagaggcccgaagaaaaatgaagacttat---agtaagcaaagagattgaattagt---------aatcaaaaaacttcctacaaagaaaagcccaggaccagatggcttcgctggtgaatgctaccaaatatttaa-aaaggaattaacacaaatgcttcccaaactctttgaaaaaata-------------------gaagaggaaagaactcattct-gtgaagccagtcataacctgt-----caccaaaaccacacaaagacatcacaagaaaactacagactactatccctcatgtatggacacacaaaatttcaa-taaata-------------------aaaatattaaataaataaaatatta--aaaagccaaatccagc--------------------------------aacatacaaaaataat------------gactgtgctccatgaccaagtggga s canFam1.chrUn 1729981 757 + 91062872 caggggaaaccaat------aacagagaggtgagaaacagcggagaatgttaacaaagccaaaactcgaatctctggaaagagcaaccaaattgtcgaaactttagctttactcac------acagagagacaacttaaatcactaaacccaggaatgaaaa-agagaacattc-tactaaccttaacagaaataaaaagaactatgagggaatactcctcaacgactgtacgccaagaaattagatcacctggatgaaatggatgggttcccagaaacctacaacctatggaaacagattcagaaagaaatgactccaggaaaaatgaagatccatacaagcagggagagagaatgaattcattaaaacgaaaacaaaaacaccttccacagagacaa--------------gacttcatgggtgaattttaccaaatatttaagaaaagaactgacaccaagacttcacaaactcttaaaaaaaaaaaaaaaacagaaaaaaaccggaggaagaagaaattcattctcatggaattattatttttatgtgttcataccaaaatcaagtcatactaagaaaagaagaccacagacaactatccttcatgtacagacacaaaaatcttcaaggaaatattagcagatcaaatccaacaatacattaaaaaaaaaaaaagtgattaaatcccatgaccagctagggtttatccaaggaaggcaaggttgatttaacatccaagaaccatataatacatatagactgtactaaaggaataaagagaa a score=30155.0 s hg17.chr7_random 663483 339 + 778964 tttattccaggaatgcaaaggtggttcaacatacaaaaaaaaaatcagtgtaatataccatattaacagaataaaaataaaaatcacatgatcatctcaactgatgcaaaaaaaggacaatctaatattttttcataacaa----aaataaataaacactcaacaactaggaatagaagggaactttctcaccctaataaaggacatctacataaaacccacagctagctaaggcaaaagacttagaactcttcccctaagatcaggagcaagacaaagatgtcggcttcagccacttctagtcaacattctactggaggtactttctagccagggcaattat s panTro1.chr6_random 575762 343 - 67355074 tttattccacgaatgcaaaggtggttcaacatacaaaaaaaaaattagcataatataccatattaacagaataaaaataaaaatcacatgatcatctcaactgatgcaaaaaaaggacaatccaatattttttcataataaaaataaataaataaacactcaacaactaggaatagaagggaactttctcaccctaataaaggacatctacataaaacccacagctagctaaggcaaaagatttagaagtcttcccctaagatcaggagcaagacaaagatgtcggcttcagccacttctagtcaacattctactggaggtactttctagccagggcaattat a score=75055.0 s hg17.chr7_random 663822 626 + 778964 aaatgaaaaga--------------------aaacagtttttac---aaagaacaaagctggaggactcacaattttggatttcaaacttaccac-aatgtcagtaatgaagacccaaggcataggg-------agagacatatagatcaatgaaatagaactgagagttcatttaaaaagctatacattcatggttgattgacttgtc--aagggtgtcaagactattcagtggggaagaagagtctcttccacaaatcgtgctgagacaattggatttccaccatacaaaagaatgcaggtggacccctgcctcacaccacatacaaaaattaactgaaagcagatcaaacacctaaatatgagaactaaactataaaactcttagaaaaatatcatagtcacaaaccttcatgaATG-------------CATCTTGTGTACA-AAATTCTGAGCAACTCTGGTCTAATCTGGTTTAATCCAACagttcaaccaccttacagttgaggaaactgtggctcagagaggggtgaggctctgctgaaggtcacTGACCCCCCATGAGCAGAAATGACCTTCAGAACACCCCTCCCTTTCCTGCACCAGGCCAATTCACTGAGCCATTTTGGTATGCAACTCTCTGCTGAGCCAAGAATGAACAAACAAATTAA s panTro1.chr6_random 576105 626 - 67355074 aaatgaaaaga--------------------aaacagtttttac---aaagaacaaagctggaggactcacaattttggatttcaaacttaccac-aatgtcagtaatgaagacccaaggcataggg-------agagacatatagatcaatgaaatagaactgagagttcatttaaaaagctatacattcatggttgattgacttgtc--aagggtgtcaagaccattcagtggggaagaagagtctcttccacaaatcgtgctgagacaattggatttccaccatacaaaagaatgcaggtggacccctgcctcacaccacatacaaaaattaactgaaagcagatcaaacacctaaacatgagaactaaactataaaactcttagaaaaatatcatagtcacaaaccatcatgaATG-------------CATCTTGTGTACA-AAATTCTGAGCAACTCTGGTCTAATCTGGTTTAATCCAACagttcaaccaccttacagatgaggaaactgtggctcagagaggggtgaggctctgctgaaggtcacTGACCCCCCATGAGCAGAAATGATCTTCAGAACACCCCTCCCTTTCCTGCACCAGGCCAACTCACTGAGCCATTTTGGTATGCAACTCTCTGCTGAGCCAAGAATGAACAAACAAATTAA s canFam1.chrUn 1731740 539 + 91062872 aaatggaaagacaatggacccaaaatagcccaaacagtgttgaccaggacgaccagaggtggaggatgc--------------cagccttgctacaaaccacagcaaggatgac----ggtgtggggctgtcacaggcaaggacgagtcagtggcac-gtattgagaatctggaaataagccctcacattcacactccactgattttccagaagggcatcatgtcaattcaacgggagaaaatagtgt-ttcaacaaac-------agacaactggatatcca-ggtgcaaaaaaata-----------------gacaccatctacaaaaattaactcgggaagggtcaaagacccaaatataggagctaaactgtaaaa-tcttaggagaa-aacat-GTCATCAATATTCACCACTGAATCCCTTAAAATCATCCCGTGCGCACAAATTTTGGGCAACTCTGGTGTACTATGGTCT----------------CAGGCCACAGGTGAGGCGACAGAGGCCCAGCTCTGGGTGAGGCC-------------CTGACCCCCTAGGAACA-------------------------------------------------------ACCTTGGTGTGC-ACTCTCT-CTGAGACAAGGACGAATGAATGAACGAA a score=25988.0 s hg17.chr7_random 664448 280 + 778964 CTTCTCggcagggtgcagtggcacttgcctataatcccagcactttaggaggctgaggtgggaggatcctttgagcccaggaatttgagaccaacccgggcaacaaagagaagccccgaggccacaccagtcccacctactcagaaggctgaggctggaaggatcagttgagcccaggaggtcgaggctacagtgagccatgatcgcgccactgcactccagcctgggcgacagagagagatactgtctcaaatgaataaatacgtataaaaataaacaa s panTro1.chr6_random 576731 280 - 67355074 CTTCTCggcagggtgcagtggcacttgcctgtaatcccagcactttaggaggctgaggtgggaggatcctttgagcccaggaatttgagaccaacctgggcaacaaagagaagccccgaggccacaccagtcccacctactcagaaggctgaggctggaaggatcaattgagcccgggaggtcgaggctacagtgagccatgatcgcgccactgcactccagcctgggcgacagagagagatgctgtatcaaaTGAATAAATACGTATAAAAATAAACAA a score=81383.0 s hg17.chr7_random 664728 719 + 778964 GTGACTTTCTTGAGACCCAGTAGCCATAAGTCCTCCCTGACATCCACAGTGCAGGGTCTAGGCTTTTCCATCCATCAGGGCTGGAGGTCTGGCTGTGTAGACAAGTCCTAGCTCTTGGTTCCTGGGGGAGGGGATTTGGGAGTCGACCGTGCCAGTGGACGCTGAGTAGCACAAGGCTGTGCCAGGAGGTCCAGAGGAGCCCAGGACAGGGCAGAGCCTGGACTAGAGACAGGCAGGTGGTCCTGAGGTCAGGTGGGGTTCAC--------------CACTGAGTTATGAGTCTCTG---CCTGACAAGCT-TGAGA---AGCCTCCCACGCCAGGTGGCAGCTGCCTCTCT-GGACCACAAGCCCCGGCACGCCAG-AGCGGCTGCATTCCCTTCTGAAATGCAGCTGTAGGGAAAGACCCAAAGCTCCGACCGCTGACCCCTCCCTGGGGATTCAGTGAGACCTCGGAACCCCTGGGGCAGGCGTGCTGGGGACTACGTGG-GGGGATACCTGCGCCATTCCCCAGACGCCTCTGGGGACCTGCTGGGGCTGAGCAGGGACAAGGAAGCCTCAGTGTTGGGAGCACCTAGATGGAAAGATTCCCAGCC----------AGGCCTCCCT-----------GGCAAGG-------------------------------------------------------------------------------AGGTATG-GAAGGGCAGCAGAAAGTGCCAGAATGGGG---CTCCCAACCCAGCCTCTGCCCCACAGCCA--CATCTCCC-----AGCCCTCTCCGGA----AGGGGTGT-------CACAGTACTGGCACCAATGGCC s panTro1.chr6_random 577011 719 - 67355074 GTGACTTTCTTGAGACCCAATAGCCATAAGTCCTCCCTGACATCCACAGTGCAGGGTCTAGGCTTTTCCATCCATCAGGGCTGGAGGTCTGGCTGTGTAGACAAGTCCTAGCTCTTGGTTCCTGGGGGAGGGGATTTGGGAGTTGACCGTGCCAGTGGACGCTGAGTAGCACAAGGCTGTGCCAGGAGGTCCAGAGGAGCCCAGGACAGGGCAGAGCCTGGACTAGAGACAGGCAGGTGGTCCTGAGGTCAGGTGGGGTTCAC--------------CACTGAGTTATGAGTCTCTG---CCTGACAAGCT-TGAGA---AGCCTCCCACGCCAGGTGGCAGCTGCCTCTCT-GGACCACAAGCCCCGGCACGCCAG-AGCGGCTGCATTCCCTTCTGAAATGCAGCTGTAGGGAAAGACCCAAAGCTCCGACCGCTGACCCCTCCCTGGGGATTCAGTGAGACCTCGGAACCCCTGGGGCAGGCGTGCTGGGGACTATGTGG-GGGGATACCTGCGCCATTCCCCAGATGCCTCTGGGGACCTGCTGGGGCTGAGCAGGGACAAGGAAGCCTCAGTGTTGGGAGCACCTAGATGGAAAGGTTCCCAGCC----------AGGCCTCCCT-----------GGCAAGG-------------------------------------------------------------------------------AGGTATG-CAAGGGCAGCAGAAAGTGCCAAAATGGGG---CTCCCAACCCAGCCTCTGCCCCACAGCCA--CATCTCCC-----AGCCCTCTCCGGA----AGAGGTGT-------CACAGTACTGGCACCAATGGCC s canFam1.chrUn 1732284 745 + 91062872 ATGAGCTTCTAGAAACCTGGCAAC----------CTCTGGC-------------TGTCTAGAATTT-----------GGGGAGGCCGTCTGGGTG--------------GGCGCT--GCTCTGGGGGAAGGGGCAGGGGGCATTGGTGGTGCCGGCCG-CGCTGG-------ACGACTGGGTGGAGGGCCCCGGACCAGCACAGG--AGGGTAG---------------------GGGGGCCCTGGGGTCGAGCAGAGTTCACGGCAGGCCCTGAGGTGCTGAGCCAGGAGACCTGGGGCCTTGGCGCCCCGCGAGACAGAGCCTCCTGCTCCAGG-GGCAGCCGCCTCTCTGGGAGCACAGGTCCCGGCAAGTCTGCAGAGGCCTCTTTCTTGCCGAAAATGCAGCTGTA-GGAAAGGCTCACAGTT-------------TCTCTCTGGGGCCCTGTGGAGACCTGGGGTCCCTGCAGGCAGGCAC-CAGGGG---ATGTGATAGAGACGCCTGCCTGGTCTCCCTGAGGCC-----------AATGGGGCTGAGCAGGGACCAGAAGGAC------CTGGGAACAGCTGGACAGAAAGGGCCCCAGTCACCCCAAAAGAGGACCCCCTTGAGGCACCGGGGGAAGGTACCCAGTGCCCTCGGGCACCCCCTGAGCTGCCACAGGATGATGCCCACCCAGGCCTATGCGGAGCCCCAGAGATCTGCAGGCATGTCAGGAGCAGCAGGAAAAGCCAGAACAGGGCACCCCCCCACCCCGC--CGGACCCACCGGCAGGCACCCCCTGCAGGGGCACAGCCCAGAGCCCAGAGGTGCTGATGAGCACAGGACTGA-GCCACTGGCA a score=185.0 s hg17.chr7_random 665447 39 + 778964 CTAGTGGGGGA---------CAGG-GGCTGTGAGGCTGGTCCTG---CCTCG s canFam1.chrUn 1733029 52 + 91062872 GAGGTTGGAGGAACCTGTCCCAGGTGGCCGTGAGCATGGTAATGTGCCCTCG a score=655.0 s hg17.chr7_random 665501 7 + 778964 TTTTCCT s panTro1.chr6_random 577835 7 - 67355074 TTTTCCT a score=13172.0 s hg17.chr7_random 665508 125 + 778964 CCCAGAGTCCCCTGAGGGAGACAGATGGGGGTTGCAGCTGGTGCTC-------------------------TGTGGCCCGCAGGGGATGGGGGGGTCTGTCGGCAGTGGCTCCTGCAGCCTGGGTCTAGGGCCTGCAATGGGCTTCCCTG s panTro1.chr6_random 577842 125 - 67355074 CCCAGAGTCCCCTGAGGGAGACAGATGGGGGTTGCAGCTGGTGCTC-------------------------TGTGGCCAGCAGGGGATGGGGGGGTCTGTCGGCAGTGGCTCCTGCAGCCTGGGTCTAGGGCCTGCAATGGGCTTCCCTG s canFam1.chrUn 1733122 121 + 91062872 CCTGGAGTCCCCCAGGGAAGGTGATGGGGACTCACAGCTCACGTTCAGGGGCTGACCCCCTTGAGGAGGCATGTGGCCTCCAGGGGA----GTTGGCTGGTGGCAGTTTCCCCTCCA-CCTCGGTA------------------------ a score=141470.0 s hg17.chr7_random 665633 452 + 778964 CCTGACTGGGGTTGCCT----AGAAGTCAGAGTCA---------AGGAGGGGTGTTTCTGTCTGTCTATATGTCCTGCACACCAGACGACTAAGGGCCTT---GG---TGGAGCCCCATGT---CCAGGGCCTTGGGGCCACCAGGCTCCAGCTCAGAAACCAGA-AGGGCCCGG-GATGGCTTCCACCACCCAGGGAGGGGC---GAGCAGGGGCCTCAGCC--------GCCGGATG----------------------CTGGTGCGTGGCTGGGT---------------------------------------------GACCGGGGGCCGGATCATAAATACTGCACATTTTTTGGTGGCTCAAAGGCCGGGATAGAAACAGTGGCTGTTTTATTCTGTAGAAACCACACGCTT---TTCATCTGAGTAC---CCT-CAGGGAGTGGGGTTGGACTC---CAGCTGTGCCAGGCCAGGGTGGGAGT-------------------CCAGGGGGCAGGCCAACTCCCGCTTGCTGCAGTCACCTTTGAGGCCCCGCTGGGTCCCGGCTCCCACCCCAGG s panTro1.chr6_random 577967 452 - 67355074 CCTGACTGGGGTTGCCT----AGAAGTCAGAGTCA---------AGGAGGGGTGTTTCTGTCTGTCTATATGTCCTGCACACCAGACGACTAAGGGCCTT---GG---TGGAGCCCCATGT---CCAGGGCCTTGGGGCCACCAGGTTCCAGCTCAGAAACCAGA-AGGGCCCAG-GATGGCTTCCACCACCCAGGGAGGGGC---GAGCAGGGGCCTCAGCT--------GCCGGATG----------------------CTGGTGCGTGGCTGGGT---------------------------------------------GACCGGGGGCCGGATCATAAATACTGCACATTTTTTGGTGGCTCAAAGGCCAGGATAGAAACAGTGGCTGTTTTATTCTGTAGAAACCACACGCTT---TTCATCTGAGTAC---CCT-CAGGGAGTGGGGTTGGACTC---CAGCTGTGCCAGGCCAGGGTGGGAGT-------------------CCAGGGGGCAGGCCAGCTCCCGCTTGCTGCCGTGACCTTTGAGGCCCCGCTGGGTCCCGGCTCCCACCCCAGG s mm5.chr5 136373310 478 + 149219885 CCCGTCTGGGATTGCCCCGGGGGAGGTTGGAGTGA---------A--------GTTTTTGTCTG--TGTGTTCCTTATACACC--TTGAATACAGGCTTC----------CAGCTCT-TGC---ACAGCGACTTTGAGCACCT--GTCCCAGCTCAGGGGCAAGACAGGGCACAGAGGAGACTTCTGTCACCCCAGTAGAGGCAGGGACCTTGGGCCACAAGCACTATGGAGCCGGATGC---------------------CTGGTGCATGGCAGGGCAGTCCTCTAGTCAGTCCTCCAAGGAACGCT------------GCAGGCTAGGGGCCAAATCACGAATACTCCACATATTTTGGCGACTCAAAGGCTTGGCTGGAAACAGTGGCTGTTTTATTCTGTAGAACTCTTATGATTTTCTTCGTCTGAGTGCCTGCCT-GAAGGGAAGAGAGTGGACTCAGGCAACTG---------GGGGTGGGGG---------------------CAGGTGGCAGGT---TTCTTGCATACTATGGCTACTTCCCGGGCCAAGCTGGG-CCTGGCTCCCATCCAGGG s rn3.chr12 30439717 504 - 46649226 CCTGTCTGGGGTTGTCCTGGGGGAGGTTGGAGTGA------------------GTCTTTGTCTGTGT-TGTTCCTTATAGACC--CTGACTACAGGCCTTTCAGGCTCTACAGCTTT-AGC---ACAGGAAATCAGAGTACCT--GTCCCAGCTCAGGGGCCAGACAGGGCCCAGGGGAGACTTCTGTCACCCCAGTAGAGGCAAGGACCTTGGGCCACAAGTACTATGGAGACGGATGC---------------------CTGGTGCGTGGCAGGGTAGTCCTCTAGTCAGCCCTCCAAGGAACGCT------------ACAGGCTAGAGGCCAAATCACGAATACTCCACATATTTTGGTGACTCAAAGGCCTGGCTGGAAACAGTGGCTGTTTTATTCTGTAGAACTCTTACGATTTTCTTCGTCTGAGTGC---CTG-AAGGGAGAGGG--TGGACTCAGGCAACTT---------GGGGTGGGGGTGGGGGGTGGGGGGTGGGGAGCAGGTGGTAGGT---TTCTTGCATACTATGCCTACTTCCCAGGCCAAGCTGGGCCTTGGCTCCCATCCAGG- s canFam1.chrUn 1733243 520 + 91062872 CCATGTAGGAGACACCC--AGAGGGGAAAGAATTATTCTGCCCCAGAAAGGACCTTCTGGGCAG--CACAGCGCCTGGAGGATCGCCGAGGGGGTGGCTA---GG---CAGAGCCAGGTGCCGGCCAGGGCCGCAGGGCTGCCA-GCGCCAGCCCAGGAGCCAGA-AGGGCTAGG-GGGCACTT----CAGCCCTGGTGCGCC---CGGCGGGGGCCTCAGGA-------CGCAGGACGCAGGCCCAGCAGGGACTTGTGGCTGGTGCACGGCGGGGC------------AGTCCTCCCAGGAACGCTGCCCACTGATCGGCAGGCTGGGGGCCAGATAGCGAATACTCCACATTTTTTGGCGGCTCAAGGGCCTGGTTGGAAACAGTCACCGTTTTATTCTGCAGAAACCACACGCTT---TGCGTCCCAGTGC---CCTGCAGGGAGTGGGGGTGGAGTC---CGGCTGCAGCCGTCGGGGGGCTGGGC---------------AGCACGGGGTGACAGGCCAGCTTCTGCACCCCGCAGTCACCTCCGAGGCCAGGCTGGGTGTCGCCTCTGCCCCAGGG a score=6076.0 s hg17.chr7_random 666085 90 + 778964 GAGAACG----------------GGAGCAGCCTCAA-ATGCTGACGGCGAAGACCCAGG--GCCCCCAGAAGTGCGAGGGCCT----------CCTTCAGTGCCC-----GCTCGGGGCCAGGG s panTro1.chr6_random 578419 90 - 67355074 GAGAACA----------------GGAGCAGCCTCAA-ATGCTGATGGCAAAGACCCAGG--GCCCCCAGAAGTGCGAGGGCCT----------CCTTCAGTGCCC-----GCTCGGGGCCAGGG s rn3.chr12 30440221 85 - 46649226 GCCAATC----------------AGAGTTACGAAGA-ATGTTGACGGACACGCCC--------------AAGAATAAGAACCTAG--------CTTTGAGTACACTTGGTTCTTGGGGCCAGAG s canFam1.chrUn 1733763 117 + 91062872 GTGAATCCTGGGTCCCCTCCTTTGGTGCAGCCAGGACAACCTGAGGTGGAGGGCCCTGGGAGTCCCCAGGGGCAAGAGGACCCAGCCCTGCCTCTGTGAGTCCCC----AGCT---GGTTAGGA a score=12953.0 s hg17.chr7_random 666175 112 + 778964 ACTCTGCCAAGTGACCTGGTGTGCCCAGAAAGGACTCAGCCCCCAGCG---------CTGGGCAGGGCAA--GGTGGCCTGGGAAGTCCTTCAGGGAGGGCAGGCAGGGACGCTTCAAGAGCC s panTro1.chr6_random 578509 112 - 67355074 ACTCTGCCAGGTGACCTGGTGTGCCCAGAAAGGACTCAGCCCCCAGCG---------CTGGGCAGGGCAA--GGTGGCCTGGGAAGTCCTTCAGGGAGGGCAGGCAGGGACGCTTCAAGAGCC s canFam1.chrUn 1733880 99 + 91062872 ----GGCACAGTG-------GAACCCAGGAAG---TCA--CTTCAGCGGAAGAAGGTGTGAACAGGGTGAGGGGTGGTCCAGG--------CTGGGATGGCGGGCAGAGAAGCTTCCAGGCCC a score=17992.0 s hg17.chr7_random 666287 199 + 778964 TGGGGTCTAGAGGTCTCATGGTGCCGGCCCTCACCACAGCTCCTGCAGCTCTGTGCCTCTACAAGGGCCGGCCACTAAGGAGTCCTCTCACTCAGTCTTTCCATCAGGGAAGCCACTCACAGGTGGGCAAAGGGGGGTAAGGGTTGGCGGTCCTGGAGCTCAGCCCATCCCACCGAGCCTCCCTCTCTTCCAACCAGGG s panTro1.chr6_random 578621 198 - 67355074 CGGGGTCTAGAGGTCTCATGGTGCCGGCCCTCACCACACCTCGTGCAGCTTT-TGCCTCTACAAGGGCCGGCCACTAAGGAGTCCTCTCACTCAGTCTTTCCATCAGGGAAGCCACTCACAGGTGGGCAAAGGGGGGTAAGGGTTGGCGGTCCTGGAGCTCAGCCCATCCCACCGAGCCTCCCTCTCTTCCAACCAGGG a score=1548.0 s hg17.chr7_random 666486 10 + 778964 CAGTGGTGCA s panTro1.chr6_random 578819 10 - 67355074 CAGTGGTGCA s mm5.chr5 136374243 10 + 149219885 CAGGGATGTC a score=8052.0 s hg17.chr7_random 666496 44 + 778964 GCCCAAGGTCACAGTGAGGTCATCCAACATCAAACAG-----------CTGGGCA----- s panTro1.chr6_random 578829 44 - 67355074 GCCCAAGGTCACAGTGAGGTCATCCAACGTCAAACAG-----------CTGGGCA----- s mm5.chr5 136374253 42 + 149219885 ACCTAAGGTCACAGTGGGGTTACTTAAGGTC--ACAA-----------TAGGGCA----- s canFam1.chrUn 1734337 56 + 91062872 GTCCAAGGTCATA-TGAGAT-ACCCAAGGTC--ATGGTACTGGTGGTCCAGGGCACAGAA a score=7904.0 s hg17.chr7_random 666540 39 + 778964 GAGCCCAGCAGAGCCCAGTACTCTCACCCCATGCTTGGC s panTro1.chr6_random 578873 39 - 67355074 GAGCCCAGCAGAGCCCAGTACTCTCACCCCATGCTTGGC s canFam1.chrUn 1734393 39 + 91062872 GAGCCCAATAGAGCCACATTCTCACACCCCACCCTCGGC a score=76105.0 s hg17.chr7_random 666579 812 + 778964 CGAACCTGGGAGGGGGCACCTGTCTCCCAAGCACTCTGACTCCCTGACCCCAACCCAGACCAGGCCTACCAAGTACCTGTGGTCCAGCTCACACCGGGCCCTGTCACCAGGCAAGCTTGGAGGTCTGGACGGGGGGCTCTGGTTGCCAAGGCCCTGCAGACGGCCATCCCATAAACAGCCCTCCCCGGCCACTCACTCCGTTTTCCCAGCTGCCGCCCCATCAGAAAAGTCCTGCGCTTCAACCCCGTTCCTTCAGCCTGGGCAGCCCC-CCTGCTCCGGTTCCCCTGTGCCACGACAAAGCCAGCTCAGCTGAGGTCATGAGGTGGCAGACAGGGGCCAGGGTGTGACTGGGACAGTCAGGGTCAGACAGGGCCCGGAGCCCTGGAAGCTTCTCAACTTTGTTCTAAGCCTACAGAGCAGCAGGGGCTCTAGGAGGGGTGGGGAGAGCAAGGTGGCCTTGGGTTTGGAGAAGATAACCCTGGCTGCTCTTGGGAGAGCAGGTGGCTGAAGATGGCACGCAGATGGGTGGGCGACAAGGTTGTCCAGGTGAGAAGCAGCCAGCCATGGGGAGGCTGGTGCAGGACCCGGAGCAGTTGGGGCCATGCATACACGGGATCTGCCCTCGGGCTGCATGTATCCTCCTGCCCACCTCTGCTCAGCTCCTGCTGCTGCCACCTGGCTTCCTGCCCAGGCCTTCTCCAAGCCTCTGGGGGGATCCTGGAACCTCCCGGCATTCATGTGTGCAGGCTCCAGGTCTCAGGATTTGGAGCCCGGAGCTGATTCAGTGAGGTCTCCCACTTGAACATTTCACA s panTro1.chr6_random 578912 813 - 67355074 CGAACCTGGGAGGGGGCACCTGTCTCCCAAGCACTCTGACTCCCTGACCCCAACCCAGACCAGGCCCACCAAGTACCTGTGGTCCAGCTCACACCGGGCCCTGTCACCAGGCAAGCTTGGAGGCCTGGACGGGGGGCTCTGGTTGCCAAGGCCCTGCACACGGCCATCCCATAAACAGCCCTCCCCGGCCACTCACTCCGTTTTCCCAGCTGCCGCCCCATCAGAAAAGTCCTGCCCTTCAACCCCGTTCCTTCAGCCTGGGCAGCCCCGCCTGCTCCGGTTCCCCCGTGCCACGACGAAGCCAGCTCAGCTGAGGTCATGAGGTGGCAGACAGGGGCCAGGGTGTGACTGGGACAGTCGGGGTCAGACAGGGCCCAGAGCCCTGGAAGCTTCTCAACTTTGTTCTAAGCCTACAGAGCAGCAGGGGCTCTAGGAGGGGTGGGGAGAGCAAGGTGGCCTTGGGTTTGGAGAAGATAACCCTGGCTGCTCTTGGGAGAGCAGGTGGCTGAAGATGGCACGCAGATGGGTGGGTGACAAGGTTGTCCAGGTGAGAAGCAGCCAGCCATGGGGAGGCTGGTGCAGGACCCGGAGCAGTGGGGGCCATGCATACACGGGATCTGCCCTCGGGCTGCATGTATCCTCCTGCCCACCTCTGCTCAGCTCCTGCTGCTGCCACCTGGCTTCCTGCCCAGGCCTTCTTCAAGCCTCTGGGGGGATCCTGGAACCTCCTGGCATTCATGTGTGCAGGCTCCAGGTCTCAGAATTTGGAGCCCGGAGCTGATTCAGTGAGGTCTCCCACTTGAACATTTCACA a score=22110.0 s hg17.chr7_random 667391 155 + 778964 CCCCAG-----CCCCTCCCTGTATTGCTGGTATCTGCCCTCC-CGTAAACCATATGCCCACAACTCTGTCCTTCAGGTTCTGCCTCTGGGGCACCCAGGCCAAGGCAACCCCCAACATCCCACTTAGTAGCCT--CATCTATGAACGG----CACCCCGATTTCCTC s panTro1.chr6_random 579725 155 - 67355074 CCCCAG-----CCCCTCCCTGTATTGCTGGTATCTGCCCTCC-CGTAAACCACATGCCCACAACTCTGTCCTTCAGGCTCTGCCTCTGGGGCACCCAGGCCAAGGCACCCCCCAACATCCCACTTAGTAGCCT--CATCTATGAACGG----CACCCCGATTTCCTC s rn3.chr12 30441559 157 - 46649226 CCCCAGGGTGCTCCTTCCTCTCCTTGCTGGGATCTTCCCCCAGTGAGAGCCACTTACCCC--------TCCTTTAGTCTCTGCCTCGGGGGCTCTAAGGCCAATGCAG--CCCAGGAGTTCAGTAAGGAGCCTCCCATCTCTGAACAGGGACCGTCATGATTCCCTC a score=57403.0 s hg17.chr7_random 667546 623 + 778964 GGGAAACCCCGTCCTCCCCCATTTTCTGTCTTGTGCTTCTGATGGAAATCTATCCCACAACAGAAACGGTACATGGGACTCAGACCCAGCGGATCCCAGGACTCCGGATGGAGCCAAAGTGAAAGGTGGggcctggcgcggtggctcacacctctcattccagcaccttgaggggccgagacgggaggatcgccagaggccaggagttggagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaaaattagcccggcgtggtggcaagtgcctgtagtcccagctactcgggaggctgaggcagaagaatcacttgatcccgaaagacggaggttgcagtgagcagagatcgtgtcacggcactgcagcctggacgacagagccagactgcgtctcaaaaaagaaaagaaaagaaaGGCTGGGCGAGGCAGGCGGGTCCCCTGGACACTGGGGGACGATCCCGCGGCAGGGCTGGGGGGTGGTTCATGGCACCCCTGGACCTAAGAGTAGGAGGCACGAGGCCATGCCAGGCCCCACCCCAGGCCCCACACCTGGGGCTGTCAGCTTGGAGAAGCGCAGGGTAAGGGGGCACCGGGAAGCCGGACC s panTro1.chr6_random 579880 623 - 67355074 GGGAAACCCCATCCTCCCCCATTTTCTGTCTTGAGCTTCTGATGGAAATCTATCCGACAACAGAAACGGTACATGGGACTCAGACCCAGCGGATCCCAGGACTCCGGATGGAGCCAAAGTGAAAGGTGGggcctggcgcggtggctcacacctctcattccagcaccttgaggggccgagacgggaggatcgcttgaggccaggagatggagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaaaattagcccggcgtggtggcaagtgcctgtagtcccagctactcgggaggctgaggcagaagaatcacttgagcccgaaagacggaggttgcagtgagcagagatcgtgtcacggcactccagcctggacgacagagccggactgcgtctcaaaaaagaaaagaaaagaaaGGCTGGGCGAGGCAGGCGGGTGCCCTGGACATTGGGGGACGATCCCGCGGCAGGGCTGGGGGGTGGTTCATGACACCCCTGGACCTAGGAGCAGGAGGCACGAGGCCATGCCAGGCCCCACTCCAGGCCCCACACCCGGGGCTGTCAGCTTGGAGAAGCGCAGGGTAAGGGGGCACCGGGAAGCCGGACC a score=2688.0 s hg17.chr7_random 668929 165 + 778964 ggggacgggggaatccgtgagggggatggaggggatccgtgaggggacgggggatctgtgagggggacgggggatccgtgagggggatgggggatctgtgagggggatggaggggatctgtgagggggacgggggatctgtgagggggatggaggggATCTGTGA s mm5.chr9 33667389 152 + 124177049 GAGGATGCGGGGCTTC-TGAGAGG-ATGCGGGGCTTCTGAGAGGATGCGGGGCTTCTGAGAGG---ATTCGGGGTTTCTGAGAGG-ATGCGGGGCTTCTGAGAAG-ATGCGGGGCTTCTGAGAGGATG-CGGGGCTTCTGAGAGGATGC-----GGGGCTTCTGA a score=2136.0 s hg17.chr7_random 669094 105 + 778964 GAGGACAGGGGATCTGTCAGGGGACAGGGGATCTA---CGAGGGGACCAGGGTTCTGTGAGAGGATGGGGGGCTTCTGTGAGGGAACGGGG-GTCTGTGGGG-TGCAGGA s mm5.chr9 33667541 107 + 124177049 GAGGATTCGGGGCTTCTGAGAGGATGCGGGGTTTC---TGAGAGGATGCGGGGCTTCTGAGAGGATGCGGGGTTTCTGAGAGGATGCGGGGCTTCTGAGAGGTTGCAGGA s danRer1.chrNA 216387286 102 + 390413307 GAGCCCTGGGTAGCTTGCTGGGGTCAGAGGGCCCAAGGTGGAGGGCCATGGGGCACCCTGGGGACT------CTACTGCAAGTACAGGGAG-ATAGGTAGGC-CCCTGGG a score=-224.0 s hg17.chr7_random 669199 370 + 778964 AATTCTGTGATTTTTGCTACTTGAGTTCAAATACCTGCTCTTCCTTTTGGACCTGGAGGTCGCCATCTTCCCTGGGGTCTGTATCTTGGTCCTTGCTGACCCCATTTCCAGGGAGCATGCAGAGGCAAATCTCTGTGAATCTTGGCCCTTTGGTGA--------TAGGTGCAGGGCAAGGAGCTTCAGTCCCAGGCTGGGCACCTGCCCAGGACACAACCCCAGAAGAGCCTGGCTGGCCCTGCTGTTTGCAGGCACTTGGGGAGCTCCCGCCCCAATGCTGCTCCGGAGTCTGGGGCCCAGCC--CACCCCTGGGGTGGGGCAGAGTCAAGGCCCAGGAGATGGAAGGGCCCCTGGATGCCCGGCCACAGCACAAGTCC s danRer1.chrNA 216387388 299 + 390413307 TA-------------GCTTGCTGGGGTCAAAGGTCC------CTAGGTGGAGGGAGAGGGGG-----TACCCTGGGGCCTCTA----------------CTGCAAGTCCAGGGAG-----AGATGTGGACCCATGGGTAGCTTG---CTGGGGTGAGAGGCCCCTAGGTGGAGGGCCAGAGGGCACA--------CTGGG-----GCCTATACTGCAAGTCCAGG-GAGAGAGGTGGACCCC----------------TGGGTAGCTTACTGGGGTCAGATGCCCCTAGGTGGAGGGCAAGGGGGGCACCCTGGGGCCTATACTG---CAAGTCCAAGGAGAGAGAAGGACCCCTGGGTAGCTTGCTGCGGTCAGAGACC a score=3854.0 s hg17.chr7_random 669914 502 + 778964 AGGGACCCACGGCTGGAGACCACCTGCCGTCACTGACTCTCCCAGCCAGTTCCAACCCCCTCCACAGCCAGGACACAGAGGCCTGGGTGAAGAAAAGGAAACACCCCCAAGCTAAA-GGAGAAGCCCAGCAAAGGCTGGGCCC-CAGC----TCTCATGACCCCTGGCAAGGGCACGGTGTGAGCAGGTGCATTCAGGTGTCCAGGCAGGTGCAGGAACCTCGTTTTAACAGGCGGCACCATCGCCGCTCAGCAATCCCTGAGCCCAAGGGCTCTGTCCT-CTGCCATGCTGGGGCCTAGAAACACTA--GAGGCTGGAGTGAAGTCCCAGCAGGAGGAGGCAGCAGACAAGACCTGCACCAGGTGAGTCAATGGCGAGGCGTCCTT--------------ACCCTGCCTGAGCTGCAGCTCCGTTTCACAGATGTGCACGCCGACATGCAGATGGAGGCCCCTCGGTCAAGGTCACAGGGCTCACAAGACATGAAGAGCTGACCCTGGGCAGAAAGTCACCTTC s canFam1.chrUn 1736879 430 + 91062872 AGGCACCCACGA---GAGGCCTCCCACCAGAGGTGG---TCTGAGCCTGGCCCAG-----------ACCAGGACACCAAG-TCTGGGTGCGGAGCGGGAG-CTGCTCCAAGCTAGGTGGAGAGGCACCTTGTCGGCCTGGCACACGGCACGACCCCCTGACACGGGTTAAGGACACA-TACGACCAGGTGACTGCAGGTCTCCAGTCAGGTGCA----CCTCGT----------GGAA----------------------GAGCTTAAGGGCTTTATTCTTCTGCAACACTGGG-CCCAGAAACAAAAAGGAAGCTGTGAC-ATGCTTCAGCGCAGGGAGGCTA-----AGGACCTGGA-------GGTCCATGCTGGGGTCTCCATGTGCATCACGCAGAACCCTTGCCGTATGCCAAGCCACTGTCCCCACTGTGCAG------ATGCACACAGAGCCCCAGGGCTCAAGGGCAGAGGGCTTGCAAGA-GTGCAAGGCTGAC------------------TTT a score=9301.0 s hg17.chr7_random 670416 97 + 778964 CTGAGCCCAGATCCAGGTGCAGCCCAGGGCTAGGGGCCGGGAGGGGGCCCAGGCAGGAGCAGAAATCCCGGGAACGCAGGGCAGAGCC-----GCGACAAAG s rn3.chr12 30445183 88 - 46649226 CTCAGCCCACACACAGGCG--------------GGGCTTGGAGAAGAGGCAAACAAAAGCAGAAATGCCCCAAATACATAACAAAGCCAGCATGGGACAAAG s canFam1.chrUn 1737309 93 + 91062872 -TTGGCGC--ATCCAGGTGCCGCCCAGGGTGACAGGCCGGGAG-GGGCCCAGGCAGGAGCAGAAATGCCAGGAATGCAGGGCAAAGCC-----GCAACAAAG a score=2250.0 s hg17.chr7_random 670513 497 + 778964 GCTGCAGGCCCACGTGGGTGGAGAGGCTCGGAAAGGATCCAGCCTCAGACCACAGCCCCCGCCACACTGCAG---------CCCTTCCTGGCTGGA-GTGGCCTCCACTCTGCCTGCCCCTCCCCAGGGCTCTCCCCATGTCGGG----ACAGGAGGGGCTGGCACTAGGGCCCTCGCCTGCATGGATGAACCAATgagggagaaaaggagggagtgagggagggaaggagTAAGTAGGGAGAGAAAGCAGGCCTGAGTTCCCACCTCTACTGCTACC-TCAGCCACCCCTGGGCTCCAGACCTATGGAATTCTTATGGAATTCTCTCTTCCCCAC-----CTGGCTTTTCTGCCCCATCACTTTAATGGACACGGTATTACACCAGACGACTTTATACAAAAAAGAAAAATGGAGCATTGTCGCCAGCATCTCATGGAAACA--AATACATGT---------------TACATTGCCACACGTCACATCCAATGCACATTCCTGGGCAAGGCGCTGTAACCGG---------TGCAGATCTG s canFam1.chrUn 1737402 413 + 91062872 CCTGCGGGGCCGTGTAGGCCTGCAATC-CAGAAACAATCCAGCCACAGACCGCAGCCTCCGCTGGGCGGCCGGGCGGCAGCCCCTTCCTGGCTGGGCGTGGACGCCACCCTGCCCGCCCC-------GGCTCCGCCCAGCTCAGGCCCCGCCAGGGCAGCAGGCACGAGCGTCCCCCCGTCCCC--------------------------------------------------------------------------CCCCCACCCCCGCGGCCACCACCAGCCCCAGCCGGGCTC-------GGGGGCCTCTTCTGGCAACGCCGCCTCCCCAGAAGCGCTCAGCCTCCTGCTCC--------------------------------GGCTTTGGGCAAAGAC------CTGGGCGGTACTCTCAGCATCCCAGGGAGACATAAATACATAAATCACACGCTGTCCATCCACCACCAGACGTC---TCCACGGCCCAGCGTTGTGAGCAGCGCGGCCACTAGACGCCCAGATGGAGACGGG a score=43235.0 s hg17.chr7_random 671010 378 + 778964 GACAGCAGC--CCACAGGCCC-------AGGCAGGGCCCCAG-CAGGTGTCCAAGGAACAGGAACCAGCTTGCAACCACCTGGCCCTGCACTTCCCCT------CCAGCCTCCAGGCTGCCCTGACG--------AGGCTGAAAACAGCACCATGAAGATGAGCTGTTGAAGATAATCCTTCGTAAGAAC-CTTCCAGCAGCACATGGACAACAGACGCCAGCCGGCCGCCAGTCCACAGATGGTCCTCGAAGAACGCGGGGTCAAGATTGAAAGCAACCTCGATGGTT---TGTCTCGTGGGCCTGGAGGTGGTGGAGGGGCCAGCCCGGGCAGGGTATGGTGAGTGCTGC------------ACATGGACACACCAAGAC--AGGTGGGCTCCCTTCTTGGATGAAACTCTTCATGGT s panTro1.chr6_random 630510 378 - 67355074 GACAGCAGC--CCACAGGCCC-------AGGCAGGGCCCCAG-CAGGTGTCCAAGGAACAGGAACCAGCTTGCAACCACCTGGCCCTGCACTTCCCCT------CCAGCCTCCAGGCTGCCCTGACG--------AGGCTGAAAACAGCACCATGAAGATGAGCTGTTGAAGACAATCCTTCATAAGAAC-CTTCCAGCAGCACATGGACAACAGACGCCAGCCGGCCGCCAGTCCACAGATGGTCCTCGGAGAACGCGGGGTCAAGATTGAAAGCAACCTCGATGGTT---TGTCTCGTGGGCCTGGAGGTGGTGGAGGGGCCAGCCCGGGCAGGGTATGGTGAGTGCTGC------------ACATGGACACACCAAGTC--AGGTGGGCTCCCTTCTTGGATGAAACTCTTCATGGT s canFam1.chrUn 1737815 390 + 91062872 GACGG-AGCCTCCACAGGCCCCCGCACACGGCTGGGCGCGAGCCAGGGGGCGCGGccaccggcacccacctgcacccaccttgc---acccaTCCCCTGGAGCCCCTGCCCCCCGCCTCCCTTTGCGCGTCCCGCGGACCAAAAACCACACCGTGAAGATGTGCTGCTGAAGGAATGCCTTTATAAAAACTCTCCCACGAACACGCGAACACCAGAGACC--CCCGCCCTCGCTCCGGGGA----CCCCACAGGCAGC-------------CAAAGGATCTTGACGGTCACATGGCCCCTCCATCTGGAGCAGGGAGAGTGGGCGA--CGGGCGACGGGCGAC-AGAGCTGCCTGCCTTCACTGGCTCGGCCCCACAGACACTGAAGTCGACTCCCTT-TGGGATGAAGGCCATCGT--- a score=14438.0 s hg17.chr7_random 671388 219 + 778964 -CTTCTGGCTACTCT-----GACACTCCT---CATCCGC-------TCCAGGGAGT--GGAGCCT--GCAGGAGGATGTCCTC-GGCCTAACCCCCATAGGTGCTGAAGTCCGAGGTAGGCAGGCATCC-CACGGGTGCCACCATGGAGGCAGGTCCAGGGACCCCACCCAGAAAGCTCTGACCTCC--GTTTCCA----CCCAACACAGCACCGCATGACCTGGCAA--CCAGGGTCTAGACTCAGTG------ s panTro1.chr6_random 630888 219 - 67355074 -CTTCTGGCTACTCT-----GACACTCCT---CATCCGC-------TCCAGGGAGT--GGAGCCT--GCAGGACGATGTCCTC-GGCCTAACCCCCATAGGTGCTGAAGTCCGAGGTAGGCGGGCATCC-CACGGGTGCCACCATGGAGGCAGGTCCAGGGACCCCACCCAGAAAGCTCTGACCTCC--GTTTCCA----CCCAACACAGCACCGCATGACCTGGCAA--CCAGGGTCTAGACTCAGTG------ s mm5.chr5 136379198 200 + 149219885 -CTCACGGCTGC-CT-----GACACTCCTTGGCACTCACTGGGTATTCTCAGGCTT--GCAG-----GCAAGACCATCCCCTCTGGTCCATTCCCATTCCATGCAGGAGCCCAGGGTAGACAGTCAGTC-------TGTCACTTTGGCAGC-----------CCCCACT-------CTCTGATCCCCAAGTTTTCATACCCTCAAATCA--ACCATGTGATGGAGCGACTCCAGGAAGCA--------A------ s canFam1.chrUn 1738205 205 + 91062872 CTGCTTGGCTGCTCCGGATGGGCACGTGG---CCTCGTC-------TCCAAGAGGCCAGACGCCCTGGCAGGAGGGCTTCGAT-GGCCCACTCCCTTCAGGTTCCAGGATCCCAAG--GGCAGGCCTCGGCGCGCAGGCTCTCGTGGCGG--GGTGCAGCGGGCC----------------ACCTCCAAGCGACGG---------------GCCCTGTGGCCGGAC----ACAGGGTCTAGACTCGGTTACGCAA a score=29961.0 s hg17.chr7_random 671607 71 + 778964 CTAGAAAAAC-GTACCACAAAACGCTTCTCACGTCCACG-GGTTTTGTTGGTGGTATTTTTTTTTTTAATTTT s panTro1.chr6_random 631107 71 - 67355074 CTAGAAAAAC-GTACCACAAAACGCTTCTCACGTCCACG-GGTTTTGTTGGTGGTATTTTTTTTTTTAATTTT s mm5.chr5 136379398 68 + 149219885 CCAGACAAACAGAACCACGGGATGCATCCAGTGTGCATGAAGTTTTGTTG-----ATTTTTTTTTCTCCTTTT s rn3.chr12 30445918 67 - 46649226 CCAGACAAACAGGACCACAGGATGCATCTGATGTGCATT-AAGTTCGTTG-----ATTTTTTTTTCTCCTTTT s canFam1.chrUn 1738410 72 + 91062872 CTAGAAAAATGTGACCACAAAGCACTTTTCACGTGTATG-GGTTTTGTTTGGTGGGTTTTTCTTTTTCCTTTT a score=113559.0 s hg17.chr7_random 671678 177 + 778964 GGATCAACAAAA---------AAAGA------ACATAGCAGGC--TCTCAGGTATACAAAACAGGTAATAT-TAGGTAAACATACAAACTTCACCTTTACAAA---AAAACAAAC---------------CACACACACACATTTCTG-TTAATACAGGTAAAGCACAATATCTTACCAAAAATAAAGAA-TTTGGGTTCTGTCCAAACACTGGC s panTro1.chr6_random 631178 179 - 67355074 GGATCAACAAAA---------AAAGA------ACATAGCAGGC--TCTCACGTATACAAAACAGGTAATAT-TAGGTAAACATACAAACTTCACCTTTACAAA---AAAACAAACCA-------------CACACACACACATTTCTG-TTAATACACGTAAAGCACAATATCTTACCAAAAATAAAGAA-TTTGGGTTCTGTCCAAACACTGGC s mm5.chr5 136379466 188 + 149219885 AGTTCAAAATAAAATATATATAATAT------ATATAGCAGGC--TCTCAGGTATAT-AAACTGATAATAT-----TAAAAATACAAAGTTCACTTTTACAGAACCAAAACAAAACAAGGAAAC------CACACACACACAATTCTGATTAACA---GTGAAGCCCAACAGCTTACTATA---AAATAA-TCTCTGTCATGTCTCCATGCTGCC s rn3.chr12 30445985 191 - 46649226 AGTTCAAAATAA---------AAAAAATATATATATAGCAGGC--TCTCAGGTATAT-AAACTGATAATAT-----TAAAAATACAAAGTTCACCTTTACAAAACCAAACCAAAACAAGGAAACCACACACACACACACACAGTTCTGGTTAACA---GTGAAACCCAACAGCTTACTATA---AAATAA-TCTTAGTCGAGTTTCCACACTGCC s canFam1.chrUn 1738482 185 + 91062872 GGTTCAAAGAAA---------AAA--------ACATAGCAGGC--TCTCAGGTATACAAAACTGGTAATAT-TAGATAAAAATACAAACTTCACCTTTACAAAACAAAAACAAAAACACAA---------CACACACACACATTTCTGTTGAATACATGTAAAGCGTAACATCTTACCAAAAATAAAGAA-TTTAGATTCTGTCCAAACAGTGGC s galGal2.chr14 4193715 163 + 20603938 GGTTCA---------------AGAAA------ACATAGCAGGCTTTCTCAGGTATATAAAACTGTTAATTTTTAGATAAAAATACAAACTTCACCTTTACAAA-------------------------------AACACATATTTCTGTTGAATACACATAAAGCATAACATTTTACCAAAAATAAAGAATTTTAGGTTTTGTTCAAATATTTGC a score=2695.0 s hg17.chr7_random 671855 13 + 778964 AGCAGAGGGAGTG s panTro1.chr6_random 631357 13 - 67355074 AGCAGAGGGAGTG s rn3.chr12 30446176 12 - 46649226 -GCAGAAGCCGTT s galGal2.chr14 4193878 12 + 20603938 AGCA-AGGTAGTT a score=834.0 s hg17.chr7_random 671855 28 + 778964 AGCAGAGGGAGTGACC--GCCACCACGGCA s galGal2.chr14 4193878 29 + 20603938 AGCA-AGGTAGTTCCCATGCCACCATGACA a score=2648.0 s hg17.chr7_random 671868 15 + 778964 --ACCGCCACCACGGCA s panTro1.chr6_random 631370 15 - 67355074 --ACCGCCACCACGGCA s galGal2.chr14 4193890 17 + 20603938 CCCATGCCACCATGACA a score=-17401.0 s hg17.chr7_random 671883 156 + 778964 CCAGGGCACACCAACAACACAGACAGAAGC-----GGCAATGCATCTCACG----TGCCGCGTGGGAACACAGCATTCTAGGTGTGCACTGCGGGGAACAA-----GTTGTCACTCAGCCACAAACGGGC-TCTGGGGCAGG-------------------------TGCCGCAGGGACGGCGTACGATTGGTTGA s panTro1.chr6_random 631385 156 - 67355074 CCAGGGCACACCAACAACACAGACAGAAGC-----GGCAATGCATCTCATG----TGCCGCGTGGGAACACAGCATTCTAGGTGTGCACTGCGGGGAACAA-----GGTGTCACTCAGCCACAAATGGGC-TCTGGGGCAGG-------------------------TGCCGCAGGGACGGCATACGATTGGTTGA s mm5.chr5 136379654 65 + 149219885 ----------------------ATAGAAGCCATTTAGCAATG---------------------GGGAG------------------------GGGGAGGGA-----GTCCCCAGGGGGCCCCA------C-CCTGA----------------------------------------------ATATGATT------ s canFam1.chrUn 1738667 64 + 91062872 ----------------------CCAGGGGC--------------------------ACCTCGCTGCGG-----------------------CGAGGAGTGG-----G---------AGCGGCA----GGC-CC-----------------------------------------GGGACGG-ACTCGATTGGTTCA s galGal2.chr14 4193907 179 + 20603938 ---------TTGTACAATGCAGATACAAGA-----ACTTGTACATTTCACACAGCTCCAACATGTGAA---ATAAAAGTATCTGTATACTGATAAGAATGACAATTGCTAACACAATATCACTAGTAGGCAACTGGCATAAGTCTTAAAGGAAAAAAAAAAAGGGATTTTTGCATGGATATCCTATGATTTGTTTA a score=92090.0 s hg17.chr7_random 672039 172 + 778964 CGCATAGTTCTTTC-------------------------AAAATGGCTTAAATTAA-----CAAATAAAGCAGGGTAAGGGAGAAACACA--AAGCCAGAAACATTTAGGAAATGATGCATAGGTAGGTATACCATGTTTATTTTAATACATCTCATTAGTTTGCATCTTGCTAGGAAAAA------TACCG-------------TCGCACTGTCCTGACAGT s panTro1.chr6_random 631541 172 - 67355074 CGCATAGTTCTTTC-------------------------AAAATGGCTTAAATTAA-----CAAATAAAGCAGGGTAAGGGAGAAACACA--AAGCCAGAAACATTTAGGAAATGATGCATAGGTAGGTATACCATGTTTATTTTAATACATCTCATTAGTTTGCATCTTGCTAGGAAAAA------TACCG-------------TCGCACTGTCCTGACAGT s mm5.chr5 136379719 166 + 149219885 CCCAGAGTCCCCTC----------------------------ATGTCTTAAGCTAG-----AAGAAACGTTAAAGGGGCAGAGGAACACAGGAAGGCAGAGGCGCATCAGAAATAATGGATAGGTAGGTATATCATGTTTATTTTAATACACCTCATTAGTTTG------GCTAGGAAAAA---AATAACCG-------------TCTCGCTGTCCCAAC--T s rn3.chr12 30446241 146 - 46649226 CTCATAGTTCTCTC--------------------------AAATGACCTAAGCTAG-----AAGATGTTAAAGG------------------AAGGCAGAGGCGCATCGGAAATGATGTATAGGTAGGTA-------TTTATTTTAATACACCTCATTAGTTTG------GCTAGGAAAAAAAAAATAACCG-------------TCTCACTGTCCCAAC--T s canFam1.chrUn 1738731 173 + 91062872 CGCATAGTTCTCTC-------------------------GAAATGGCTTAAATTAAAAAGTAAGATAAAATGGGGCAGGGGAGAAACACGTAAAGCCAGAAACATTTAGGAAGTGATGCATAGGTGGATATACCATGTTTATTTTAATACATCTCA----TTTGCATCCTGCGAGGGGAAA------TACGG-------------TCCCACTGTCCTGAC--T s galGal2.chr14 4194086 197 + 20603938 CGCACGTCTCTCTTCTCTTTCCTCTTTGTTTCTTTTTAGGTACTGCTTTAAATTAC--------------GGGGGAGGTTGGGGAACATA--AACCAAGAAACGTCTAGAAAATTATGCATAGG----TATACCACTTTTATTTTAATACATCTCATTAGTTTGCATCCCACTAGGAGAAA------TACCATAATGTTTTGTGTTCTTATTGTTATACCAGT a score=77804.0 s hg17.chr7_random 672211 175 + 778964 TAcagcagcc---tgtgtgttatcggtgtaaatgtcatccaagagataattaaaaaaaaaaaaaaaaaaaaa----aagctagccaaagagtaaaaagga-aagcttaataatcactttatggtgtaaaaaaaaaaaaaaaaaaacaaaaaaaaaaaa-aacaaaacaaaaacaaaaaa-------aaaaa s panTro1.chr6_random 631713 170 - 67355074 TACAGCAGCC---TGTGTGTTATCGGTGTAAATGTCATCCAAGAGATaa--aaaaaaaaaaaaaaaaaaaaaaaGCAAGCTAGCCAAAGAGTAAAAAGGA-AAGCTTAATAATCACTTTATGGTGTaaaaaaaaaaaaaacaaaaca---------------aaaacaaaaacaaaaaaacaaaacaaaaa s mm5.chr5 136379885 160 + 149219885 TACAGCAGCCTCGTGCGTGTTATCGACGAAAATGTCATCCAAGAGATTT------AAAAAAAAAAAAAAAAA----AAGCTAGGCAGAGAATAAAAAGGAGAAGCT---TACTCACTTCATGGTGTAAAAAAAGAGAGAGAAAGAAGGAAAGG---------AAAACGAAAATAAAG---------AAATT s rn3.chr12 30446387 170 - 46649226 TACAGCAGCCTCGTGCATGTTATCAACGAAAATGTCATCCAAGAGATTT-----AAAAAAAAAAAAAAAAAA----AGGCTAGGCAGAGAATAAAAAGGAGAAGCT---CAATTACTTCATGGTGTAAAAAAATAAAAGGAAAGGAAAAAAAAAAAAAGAAAAAGATAAGAAAAAAG---------AAATT s canFam1.chrUn 1738904 130 + 91062872 TACAGCAGCC---TG-GTGTTATCGGTGTAAATGTCATCCAAGAGATAATTaaaaaaaaaaaaaaaaaaaaa----aaGCTAGCCAAAGAGTAAAAAGGA-AAGCTTAATAATCACTTTATGGTGTAAAAAAAA----------------------------------------------------AAAAT a score=58665.0 s hg17.chr7_random 672386 313 + 778964 CCACTTAAGGCTCTCAGGAAGGTTT-------CTGTATGGGCTT---AAATACTAC--AGCGAGGAGGTGTGGTTTCTAAA-GTTCGCGTGGCGGTT-----TCCAAAACATTCCTGCTTCCTGCGGGCCCCT-------GCAAAGCCCAC---CAGCACCCCTCTGGAGTCTTTCCCAAAGCAGGCTCT--GCATCCTCGGCAAAAAAGCACCTGTGACCACCCGGACAAAAATCCAGTCTGCTGA--AACCTCTG-CACTTCC---------ATCCCACGGGGCGACCCT--------CCATCTCATC--AAGTTTAAATATTTTTGTG------------------------AGTCCGTTTTGTTT-TTGTCATTTGTG--------------------GTTTTGTT s panTro1.chr6_random 631883 313 - 67355074 cCACTTAAGGCTCTCAGGAAGGTTT-------CTGTATGGGCTT---AAATACTAC--AGCGAGGAGGTGTGGTTTCTAAA-GTTCGCGTGGCGGTT-----TCCAAAACATTCCTGCTTCCCGCGGGCCCCT-------GCAGAGCCCAC---CAGCACCCCTCTGGAGTCGTTCCCAAAGCAGGCTCT--GCATCCTCGGCAAAAAAGCACCTGTGACCACCCGGACAGAAATCCAGTCTGCTGA--GACCTCTG-CACTTCC---------ATCCCACGGGGCGACCCT--------CCATCTCATC--GAGTTTAGATATTTTTGTG------------------------AGTCCGTTTTGTTT-TTGTCATTTGTG--------------------GTTTTGTT s mm5.chr5 136380045 335 + 149219885 CCACGTAAGGCCATCAGGAAGGTCC------------TAGGC-------AGACTCA--AGCGAGGTG--GTGGCTTCCAGG-----CCGTGGGCATC-----TCCCA------CCTGTTC------AGTTCCC-------ACGGAGCTGGCAGGCAGCATCCC----------------AGGCGGGCTCCAGGCGTCCTTGGC-GAAAAGCACCTGTGCCCA--CGGGCAG-AATCCAGGGTGGTGGCCAACATCAGCCACCTCTCGAGGGTCAGTCCTGCAGGGCGGCCCTTCCGTCGCCCACTTCAGT--CTTTTTGTTTCTTCTGGTGGGGTTTTTTTTTGTTGTTGGGTGTGGTTTGGTTTGTTT-TTGTTTTTTTTGTTTTTTTGTTTTTAATTTTTTTTTTGTT s rn3.chr12 30446557 287 - 46649226 CCACGTAAGGCCATCAGGAAGTTCC------------CAGGC-------AGACTCA--GTCCAGGCG--GTGGCTTCCAGG----CCCGCGGGCTTC-----TCCCA------TTCGTTC------AGTTCCTGTACCTAGTAGAGCTGGCAGGTAGCATTCT---------------------GG------GCGTCCTTGGC-GAAAAGCACCTGTGCCCA--CGGGCAG-AATCCAGGGTGGTGGCCAACATCAGCCACCACTCGAGGGTCAGTCCTGCAGGGCGGCCCTTCTGTTGCCCGCTTCAGT--CTTTTTTTGT-TTCTTCTG------------------------GTGGGGTTTTTTTG-TTGTTGGGTGTG--------------------GTTTTGTT s canFam1.chrUn 1739034 305 + 91062872 CCACTTAAGGCTCTCGGGAAGGTTT-------CTGTATAGACTC---AAACACTAC--GGCAAGGAGATGT-GTTTCTAAG---TCCCGTGGCGGT------TCTGAGACATCCCTGGCTCCCACGTGCCCC--------GCAGGGCCCTC----GGCACCCGCCCGGAGTCCTCCAGAAAGCAGGTTCT--GTGTCCCTGGC--TGAAGCACCTGTGAACC--TGGACAGAAATCCGGTCCGCCGAGGCACGT----CGCTTCC---------ATCCCACAGGGGTGTCCT--------CCATCCCGACAACTGTGTAGATATTTTTGTG------------------------AGTCAGTTTTGTTTGTCATGTTTTGTG--------------------GTTCTGTT s galGal2.chr14 4194396 283 + 20603938 CCACTTAAGGCTCCCCAGAAGGTTTTTTTTTTTTGTATAGACTTTTAAAACACCACCAAGCAAGGATGTATTGTTCTATAGTGTTTGTGTGGCATTTGATCATTTCATACATTCCTGCTTTTTTTGTGC-----------CTGAAGTCCAT---CAGCGTCCATCCATCTTCATCAAGAACGCAGGCACA----TTTCTTGAC-GTAAAGCACCGTTGACTGCTCTGACAGAAATC----------------------CACT------------AT------------------------TCACTCAGAT-----TTTTGTCATGTTTTTG------------------------GGTACTTTTGGTAT-CCTCCATTCATT--------------------CATTCATT a score=1329.0 s hg17.chr7_random 672699 29 + 778964 T--------------------tctctctctc-----------------------------------------tttctctctctctctTTT s panTro1.chr6_random 632196 27 - 67355074 T--------------------tctctctctc-------------------------------------------tctctctctctctctT s mm5.chr5 136380380 37 + 149219885 T--------------------TTTTTTTCTTTTTT---------------------------------GTGGTTTTGTTTTCGCTCTCTG s rn3.chr12 30446844 70 - 46649226 T--------------------TTTTTTTTTCTTTTTTAATTTTTTTGTTTTTTTTTTTTTTCTTTTTTGTGGTTTTGTTTTCGCTCTCTG s canFam1.chrUn 1739339 49 + 91062872 TGCTCACGctctctctcgctctctcgctctc-----------------------------------------tctctctctccctctTTT a score=234478.0 s hg17.chr7_random 672728 256 + 778964 TGACAAGGAAGC-TTCTTACTGCTTCACCGAGTGCTACAATACTTGCTTTGATGTCACATTAAACAAATGTGCACTGTCTCTTTGTTCTC-CCAAGTGTTCTCGG-ACACAGTTTTT--------------CACGGAGGAGAACAAAAACCGCACAC----TGGCAATAAAGCACCGTACATAGTAGGTTCAGGAATGTAACACCCCATGTACATCCATGTCCCAGGAAAGGGCTG------CGGCTCATCCTCACCTCAAATCTGCAGGGAAAAAGGGAAAG s panTro1.chr6_random 632223 255 - 67355074 TGACAAGGAAGC-TTCTTACTGCTTCACCGAGTGCTACAATACTTGCTTTGATGTCACATTAAACAAATGTGCACTGTCTCTTTGTTCTC-CCGAGTGTTCTCGG-ACACAGTTTTT--------------CACGGAGGAGAACAAAGACCGCACAC----TGGCAATAAAGCACCGTACATAGTAGGTTCAGGAATGTAACACGCCATGTACATCCATGTCCCAGGAAAGGGCTG------CGGCTCATCCTCACCTCACATCTGCAGGG-AGAAGGGAAAG s mm5.chr5 136380417 249 + 149219885 TGACAAGGAAGCTTTCTCACTGTCTCTCTGAGTGCTACAGTACTTGCTTTGATGTCACACTGAACAAACGGACACTGTCTCTT-------------TGTCCTCGG-ACACAGTTTTT--------------CACGGAGGAGAACAAAGACCGCACGCACATTGGCAATGAAGCACCATACATAGTATGTTCAGGAATGTCACACGCCACGCACATCCGTGTCCCGGGAGAGGGCGG-----CCGGCTCAT-CTCACCTCACATCTGTGGGAAGGCAGGAAGAG s rn3.chr12 30446914 249 - 46649226 TGACAAGGAAGCTTTCTCACTGTCTCTCCGAGTGCTACAGTACTTGCTTTGATGTCACACTGAACAAACGGACACTGTCTCTT-------------TGTCCTCGG-ACACAGTTTTT--------------CACGGAGGAGAACAAAGACTGCACGCACATTGGCAATGAAGCACCATACATAGTATGTTCAGGAATGTCACACGCCACGTACATCCGTGTCCCGGGAGAGGGCAG-----CCAGCTCAT-CTCACCTCACATCTGTGGGAAGGCAGGAAGAG s canFam1.chrUn 1739388 255 + 91062872 TGACAAGGAAGC-TTCTTATTGTTTCACCGAGTGCTACAATACTTGCTTTGATGTCACATTAAACAAATGTATACTGTCTCTTTGTTCTC-CCGAGTGCGCATGG-AGACAGTTTTT--------------CACGGAGGAGAACAAAGATCGCACGC----TGGCAATG-AGCACCGTACGTAGTAGGTTCAGGAATGTAACACGCCATGTACATCCGTGTCCCGGAGAAGGGCTG-----CTGGCTTGTCCTCACCTCACATCTGCGGGG-AGAGCGGAGAG s galGal2.chr14 4194723 277 + 20603938 GGACAGGGAAGC-TTCCTATTGTTTCACAGAGTGCTACAATACTTGCTTTGATGTCACATTAAACAAATGTACATTGTCTCTTTGTTCTCATTAAGTGTTCTTTTCAGCCAGTTTTTTTTTTTTTTTTTTCCACACAGGAGAACAAATAAAGTATAC----AGTCAATA-AGCACCATACATAGTAGGTTCAGGAATGTAACAAACCATGTACATCCATGTCCCAGAGAGAAGTTTTTTTTCTAGCTTATTTTCACCTTACATCTGCAGGAGAGAAAAAAGAT a score=1890.0 s hg17.chr7_random 672984 9 + 778964 ACAGACACT s panTro1.chr6_random 632478 8 - 67355074 ACAGACAC- s canFam1.chrUn 1739643 9 + 91062872 ACAGACACT s galGal2.chr14 4195000 9 + 20603938 ACAATAACT a score=2325.0 s hg17.chr7_random 672993 75 + 778964 -TGAGACCACCGAACCAAGTTGAACCACCCAGCACACACAAGGGCTGCCATAGGAGAAAAAAGGGGTGAAAAAATT s panTro1.chr6_random 632486 71 - 67355074 -TGAGACCACCG-ACCAAG-TGAACCACCCAGCACACAC-ATCGCTG-CATAGGAGGAAAACAGGGTGAAAACATT s galGal2.chr14 4195009 68 + 20603938 CTATGATTA--GAATCAAA-GGTCCTATC-----CTCAAAGTAGATGACTTAAGAATTAAAAAAGAAAAATAAGCT a score=1665.0 s hg17.chr7_random 673068 38 + 778964 TAAACCCAATCAGGGGCACACAGGGGATTTTCAGTTTT s panTro1.chr6_random 632557 36 - 67355074 TTTACCC-ATCAAGGGCACACA-GGGATTTCAAGTTTT a score=8652.0 s hg17.chr7_random 673438 171 + 778964 CACCGTcaccaccatcaca-----atgatcacgactgtcactatcctcaccaccatcaccaccatcaccaccatctctatccccaccatcaccatcaccaccgtcaccatcaccaccactgtcactatc--ctcaccaacatcaccaccatcaccatc--accaccattaccatc--accac s rn3.chr12 16126534 181 + 46649226 CACCATCATCACCATCTCACCATCATCATCACCATCATCACTGTC-TCACCATCATCACCACCATTACCACCATCACCATCATCACCACCATCATCACCATCATCACCACCATCACCACCATCATCACCATCTCATCACCGTCATCATCATCACTATCTCACCATCATCACTGTCTCACCAT a score=9229.0 s hg17.chr7_random 673609 103 + 778964 catcaccaccatcatcgtgatcaccactgtcactatcctcacca--ccatcaccaccatcaccatcaccaccatcaccatcacca--tcaccactgtcactatcctc s mm5.chr5 12769338 91 - 149219885 CATCGCCACTATCTGCGTGAA-------ATTGTGATTCTGACAAAGCCATCACCATTACCACCATCATCACTATC-------TCA--TCATTACTACCACCATCATC s rn3.chr12 16126715 104 + 46649226 CATCACCATCATCACCACCATCACCACCATCAGCAGCATCATCA--CCATCATCACCATC-TCATCACCATCATCATCATCACTATCTCACCATCATCACCATCATC a score=123507.0 s hg17.chr7_random 673712 638 + 778964 accaccatcaccaccatcaccatcaccatcaccaccatcaccatcatcgtca--tcaccactgtcactatcctcaccaccatcaccaccat-----------caccatcaccacc-atcaccatcaccaccatca--------ccatcaccaccgtcatcaccactgtc--actatcctcaccaacatcaccaccatcaccaccg------------tcaccaccatcac----caccgtcaccaccatcatcgtgatcaccactgtcacta--tcctcaccaccatcaccaccatcacca--tcaccaccatcaccatcaccatcaccactgtcacta--------------tcctcaccaacatcaccaccatcaccaTTAGCAGCAACA----TAacatttgttgagaatcagttctcataatgacccagtgaggcagggatttttatggtctcatttcacCAAAGCCCAATGATGCAGGTGACACATTCAAACCTGTACTTGTCCACGTTGAGTGGACTGCCCACT--------------------GTGTCCTCCATGCTGAGGCTCTGGAAGGCAGGGGAGGGTGG--GTGTCCTTAGGGTCCTTGTCCCCATCATGGAAGTTGGGCTCAAGCCACACCTTCGCTGGGCTCAGTCGTCTGATCTGTGAGTGGGAAGCTTGGTGCAGCTCCAGGAGTCTGT-TTCTGGACACTGAGGGC s panTro1.chr6_random 344277 585 - 67355074 accactaccaccatcatcactgccaccatcactaccatcatcaGcaccataa--tcatcactaccactatc---------gtcaccatcat-----------caccatcactacc-accgtcatcaccaccatta-----------tcaccaccatcatcagcac-----------------------catcaccatcacta---------------tcaccatcatcac----cactgtcaccatcactatc-----catcactattgctg--tcctcaccaccatcacca-----------tcaccaccatcaccgtca---tcaccactgtcacta--------------tcctcaccaacatcaccaccatcaccattagcagcagca----taacATTTGTTGAGactcagttctcataatgacccagtgaggcagggatttttatggtctcatttcacCAAAGCCCAATGATGCAGGTGACACATTCAAACCTGTACTTGTCCACGTTGAGTGGACTGCCCACT--------------------GTGTCCTCCATGCTGAGGCTCTGGAAGGCAGGGGAGGGTGG--GTGTCCTTAGGGCCCTTGTCCCCATCATGGAAGTTGGGCTCAAGCCACACCTTCGCTGGGCTCAGTCGTCTGATCGGTGAGTGGGAAGCTTGGTGCAGCTCCAGGAGTCTGT-TTCTGGACACTGAGGGA s mm5.chr5 12769429 586 - 149219885 ATTACCAATACCACCA-CTTCATTACCACCACCACCATCACCTCCATCATGA--TTACCAATAGCACTATT---------GCTACCACCAC-----------CATCATCATTATTGACCATCACCACCACCATCA-----------TCACTATC-TCACCATCACTATCTTAC---------------CATCACCACCACTA---------------CCACCATCATCAC----TATC-TCACCATCACTATC-------------TTACCA--TCACCACCACTACCACCATCATCACTA--TC-TCACCATCACCATCA---TCATCACCACCACCG--------------TCATCACTGATATCACCACTATCGCCACTATCAACATAAGTAGGGATATTTATTGAATCTTGGTCCTTACAATAA-----------ATGGGTTTTAAAAATCTCACTCC-CCCAGGACTAGTGATATGAAAAATATATTCAGATTTACCCTTGCTCCCCTGAATCAAAGTGTCAATCCTCTCAGAAACGTAGCCCGGCTGACCTCTATGTGAAACCCTAGGAGGACATGGGAGGGCAGACATATCACTA-TATCTTCTACCCCACTGTGG-TGTGGGGCTCAAGTGGTACCCACGGTAGGTTTCACAGTCTGA-----GAGTGGGAAGCCC-------------ACATCTGTGTTCTAGATGCTGAGAGC s rn3.chr12 16126819 673 + 46649226 ACCACCATCATCACCATCATCACCATC-TCATCACCGTCATCATCATCACTATCTCACCATCATCACTGTC-TCACCATCATCACCATCATCACTGTCTCACCACCATCACCACC-ATTATCATCACCATCATCACTATCTCACCATCATCATCACCATCATCACTGTCTCAC---------------CATCATCATCACCATCATCAATCACTGTCTCACCATCATCACGTCTTACCACCATCACCACCGTCATTGTCACCATCATCACTATCTCATCATCATCATCACCATCATCACTGTCTCACCACCATCACCATCA---TCATCACCATCATCACCGTCTCACCATCCTCCTCACTGATATCAACACTATTGCCACCATCATCATACACAGGGATATTTATTGAATCTTAGTCCTTATAATAA-----------ATGATTTTAGAAAGTCTCACTCC-CCCAGGACTAGTGCTGTGGAAAGTACATCCAGATGTAC-CCTGTTTCCCTGGATTGAAGTATCAGTC--CCCCTAGAAACAGCCTGACCATCCTTTATGCGAAGCCCTAGGAGGACATGGGA-GGCAGACTCATCCCTG-TATCTTCAACCCCACTGTGG-TGAGGGGCTCACGT---------GGTAGGCTTCACATTCTTC-CTGAGAGTGGGAAGCCC-ATGTGGATCCCCTGGGCTGTGTTCTGGATGCTGAGAGC a score=0.0 s hg17.chr7_random 674350 2 + 778964 GG a score=38.0 s hg17.chr7_random 674350 1 + 778964 G s panTro1.chr6_random 344862 1 - 67355074 G s mm5.chr5 12770015 1 - 149219885 A a score=100.0 s hg17.chr7_random 674351 1 + 778964 G s panTro1.chr6_random 344863 1 - 67355074 G a score=9155.0 s hg17.chr7_random 674352 94 + 778964 CTTGGGAGCGAGTGGGGAG----GGCCACGCTACCGGAAA---------TGGCCTGTGCCCATGGGAAAGGTCAGCCTGGCCACCAGGGCCCAGAATAAGCAACTGT s panTro1.chr6_random 344864 94 - 67355074 CTTGGGAGTGAGTGGGGAG----GGCCACGCTACCGGAAA---------TGGCCTGTGCCCATGGGAAAGGTCAGCCTGGCCACCAGGGTCCAGAATAAGCAACTGT s rn3.chr12 16127492 86 + 46649226 CCAGGCAGTGAGCCAGGAGTGTTGACCATCTTGAAGCAAACAAGAAGGTTGACCTTGTGCTAGGGAGAAGCCTAACCTGGCC---------------------CTGT a score=33471.0 s hg17.chr7_random 674446 160 + 778964 GGAAACAACCCGGCCTGAGCCCCACACAAGTCACTGCTGTGCCTCGGGGACTTGCGCGCCATTCCTCCCCCATT--TCA--CTGGAGCTTGC-ATTTTT-GTCATAGTTTTCCAGGGACAGGCGTTTAACATCACGTGCCTT--------TCCTCC----AGCCCTTCCCCCTTGAGC s panTro1.chr6_random 344958 166 - 67355074 GGAAAAAACCTGGCCTGAGCCCCACACAAGTCACTGCTGTGCCTCGGGGACTTGCGCGCCATTCCTCCCCCATTCCTCAGCTTGGAGCTTGCTATTTTTCGTCATAGTTTTAGAAGGACAGGCATTTAGCATCACGTGCCTT--------TCCTCC----AGCCCTTCCCCCTCGAGC s mm5.chr5 12770084 169 - 149219885 GGGAACCCCGTGGTCTG-GCCCTGTGGAAGCTGCGG-TGTGCCCTGGAGCCTCAAAGGACCTTCCT-CCTCACT--TCA--CCAGCGTTCAC-ATTTTT-GTCATAGCTTTCTGGGGAATGGCATTTACTGCCACATGCCTTCAATCCAGTCCTCTTGAAAGCCCTTTCCCCTTTAGC s rn3.chr12 16127578 133 + 46649226 GGAAGCT-----------GCCC---------------TGTGCCCCGGAACCTTGAGGGCCCTTCCT-CCTCATT--TCA--CTGGCGCTCAC-ATTTTC-GTCCTAGCTTGCCCAGGACTGGCATTTACTGCCACGTGCCTT--------CAGTTC----AGCCCTTCTCCTGAAAGC a score=3627.0 s hg17.chr7_random 674606 25 + 778964 TGTTTTCCTTCCACAGCAATCCATC s panTro1.chr6_random 345124 25 - 67355074 TGTTTTCCTTCCTCAGCAATCCATC s rn3.chr12 16127711 25 + 46649226 CCTTTCCCTTCAGCAGAGCTTCACC a score=34228.0 s hg17.chr7_random 674631 405 + 778964 TCCCTTCCTTCATCCTCTGCTCCACTCCTGCAGGGCCTCCTGCCCCAGCAGCTGGAGTCCCGCTCCATCCCAGCCAGGAGGGCTGCACAGGAGGGCTGCGGACTGCCTCCCCTATGCTCACTCGGTGTCCCCAGGGCTGCTCTTTCCCACCCCCAACTGTGGAAGGGGCTGTGTGGTGGTCCCTCATTTTCCCATGTGATGGGGCCACCTTTGGTGTGCTCAAGGAGTCCCTTTTTAAGGGAGACACAAGTAAGTTTGCATCTGGCTGTGGGTGGCATTGAGAGATAGGAGAGGGGGCAGTGGGTAGGCGCAGGCCCTGGAGGCGGGGCCAGGGCAGACCCCCACTTCACCACGGCAGTGGGTAACTTCAGACACACACCTCCGAAGCACTCACCTCCACTTTCT s panTro1.chr6_random 345149 382 - 67355074 TCCCTTCCTTCATCCTCTGCTGCACTCCTGCAGGGCCTCCTGCCCCAGTAGCTGGAG----------TCCCAGC-------------CAGGAGGGCTGCGGGCTGCCTCCCCTATGCTCACTCTGTGTCCCCAGGGCTGCTCTTTCCCACCCCCAACTGTGGAAGGGGCTGTGTGGTGGTCCCTCATTTTCCCATGTGATGGGGCCACCTTTGGTGTGCTCAAGGGGTCCCTTTTTCAGGGAGACACAAGTAAGTTTGCATCTGGCTGTGGGTGGCATTGAGAGATAGGAGAGGGGGCAGTGGGTAGGCGCAGGCCCTGGAGGCGGGGCCAGGGCAGACCCCCACTTCGCCACGGCAGTGGGTAACTTCAGACACACACCTCCGAAGCACTCACCTCCACTTTCT a score=2852.0 s hg17.chr7_random 675036 31 + 778964 CCTCCTCCTCGGCCCTCTGAGTTGTGACAAT s panTro1.chr6_random 345668 31 - 67355074 CCTCCTTCTCGGCCCTCTGAGTTGTGACAAT a score=8108.0 s hg17.chr7_random 675067 40 + 778964 GTGATGGGCACAGCCCTGAGCACAGCCCCCACCCCTGTCC s panTro1.chr6_random 345699 40 - 67355074 GTGATGGGCACAGCCCTGAGCACAGCCCCCACCCCTGTCC s mm5.chr2 131150931 40 + 181686250 GTGGTCTGTACTGACGTCAGCACAGCCCCCACCCCTTTCC a score=11429.0 s hg17.chr7_random 675107 121 + 778964 AGGGCACTCAGTAAACACCAAGTGGTGCCTGATTGCGATCTCCATTCCTGTGAGTGATTGGAGTGGATGGGAAGATGCTTTGAACAGCACCCCTCAGGAGAAGAAAGTTTGGGGAGACTGA s panTro1.chr6_random 345739 121 - 67355074 AGGGCACTCAGTAAACACCAAGTGGTGCCTGATTGCGATTTCCATTCCTGTGAGTGATTGGAGTGGATGGGAAGATGCTTTGAACAGCACCCCTCAGGAGAAGAAAGTTTGGGGAGACTGA a score=11561.0 s hg17.chr7_random 675228 78 + 778964 CAGGCATTTGGGGGGCTCCTCTGAGTGTCAGGGGTCTTGCTTCTCCTGTCCAGTCCATCTCTCTTTCCTG-ACATCTCC s panTro1.chr6_random 345860 74 - 67355074 CAGGCATTTGGGGGGCTCCTCTG----TCAGGGGTCTTGCTTCTCCTGTCCAGTCCATCTCTCTTTCCTG-ACATCTCC s mm5.chr5 12772435 73 - 149219885 CGGGCGTTTGCAGA---CCTCTGTGTATCA---GTCCTGTACCTCATGGCTGATCCATTTCTCTTTCCTGAACATCTTC a score=116859.0 s hg17.chr7_random 675306 1295 + 778964 TTCCTACATACGTTGCTTAGAAGGTGGGATAAATtcctggttaacacagtgaaaccccgtttctactaaaaatacaaaaaacattagctgggcatggtggcgggcgcctgtagtcccagctactccggaggctgaggcaggagaatggcgtgaacccgggagttggagcttgcagtgagccgagatcgcaccactacactccagcctgggcaacagagtgagactgtctcaaaaaaaaaaaaaaaaa--------gaaGGTGGGATAAATGACCCTCCTTCACCATTGCCCCCAGGCGTTGTGGCAGCTGGGAGGGTCCCTGGCAGCAGGGTGTTATGCCAGCCGCCTGCAGGACTCAGAAGAGTTTATAGTTTTCTATCTTAACCTAGGTTTCCTAGCCTATCCTTACCCTTAGGATTAAATTTTGCTGGAtgtattagttagctgtggctgtgtaacaaattcccctcaaacttagtggcctctgtcaacagtgttacatttgttccatttcctgtgggtcatggaggaagcagctgctcggctctggcCTGGAACCCTCCTCGGGCTGGGGGGATCAGAAGGTCTTATGGGGCAGAGGAGATTTCTGTGGTGGCTTCCCCCCAACAGGGCTGGAGGGTGGCAGGAAGGTGCTGCTCCTCCTCTGAGCTTCTCTGCAGCTgagcgatccaggagagagcagggcaggagccacagtatcttttacaacctggctttgcaaatctcagactcatttccttagcattctctagttggatccgtcagccctattcatcgtggtcttagttgcatccgtcagccctattcatcgtgggacagagcacacagggtgtggacaccaggaggcgagtgaggatcattgggggccGGCTGCCTCCATGCCAGGTgtaacagaaatactcaaaataacagtgtcttaaaccacacggctgtttctcacgctctgggagtctgtctagggtgggtgtgttgttccatggggcccgagaaccagctttctcttactgatgctcctcaggggcccaggatggctgctgcagccccagccatcatctccacatgccagtcagcaggaaggaggagaggggagggaCATGTTCAGAAACTGCACATGCCACTGTGTCTGCGTGCCCCTGGTCAGCACTTGGTCAGTTGCACAGGTGGGAGGCACCTGGTAAATGCTGCTCACTGTGGTTTTCTGTCTCAGGGCATTACGGGAATTTGCAAAACAGCATGTCAGGAAGGGGTAAAATACGTCCCCATTCAAGTTGAGAGGCGGGGG s panTro1.chr6_random 345934 1299 - 67355074 TTCCTACGTACGTTGCTTAGAAGGTGGGATAAATtcctggttaacacagtgaaaccccgtttctactaaaaatacaaaaaa-attagccggacatggtggtgggtgcctgtagtcccagctactctggaggctgaggcaggagaacggcgtgaacccaggcggtggagcttgcagtgagcccagattgcaccactgcactccagcctgggcaacagagtgagactgtctcaaaaaaaaaaaaaaaaaaaaaaaaagaaGGTGGGATAAATGACCCTCCTTCACCATTGCCCCCAGGCGTTGTGGCAGCTGGGAGGGTCCCTGGCAGCAGGGTGTTATGCCAGCCACCTGCAGGACTCAGAAGAGTTTATAGTTTTCTATCTTAACCTAGGTTTCCTAGCCTATCCTTACCCTTAGGATTAAATTTTGCTGGAtgtattagttagctgtggctgtgtaacaaattcccctcaaacttagtggcctctgtcaacagtgttacatttgttccatttcctgtgggtcatggaggaagcagctgctcagctctggcCTGGAACCCTCCTCGGGCTGTGGGGATCAGAAGGTCTTATGGGGCAGAGGAGATTTCTGTGGTGGCTTCCCCCCAACAGGGCTGGAGGGTGGCGGGAAGGTGCTCCTCCTTCTTTGAGCTTCTCTGC---TgagcgatccaggagagagcagggcaggagccacagtatcttttacaacctggctttgcaaatctcagactcatttccatagcattctctagttggatccgtcagccctattcattgtggTCttagttgcatccgtcagccctattcatcatgggacagagcacagagggtgtggacaccaggaggcgagtgagaatcattgggggccGGCTGCTGCCATGCCAGGTgtaacagaaatactcaaaataacagtgtcttaaaccacacggctgtttctcacgctctgggagtctgtctagggtgggtgtgttgttccatggggcccgagaaccagctttctcttactgatgctcctcaggggcccaggatggctgctgcagccccagccatcatctccacatgccagtcagcaggaaggaggagaggggaGGGACATGTTCAGAAACCGCACATGCCACTGTGTCTGTGTGCCCCTGGTCAGCACGTGGTCAGTTGCACAGGTGGGAGGCACCTGGTAAATGCTGCTCACTGTGGTTTTCTGTCTCAGGGCGTTACGGGAATTTGCGAAACAGCATGTCAGGAAGGGGTAAAATACGTCCCCGTTCAAGTTGAGAGGCTGGGG a score=136947.0 s hg17.chr7_random 676601 1095 + 778964 CAGCTTTGGGGCTTTtagggcccagtctaggctttccttcttggttccgtggttcctatctagggtggtcactcagccctgcggagctgcagtttctgcctctggaaaataaggataaaagtatgttcccctct--cagggttatctgttgcgaggtcgatgtgggtcagtgtgtccaagagcccccct----ccctgacctggagtgggcgttcaacaCAGCAAGTTCCCTCCTCCCTCCTTTCTCCACACCCCAGGGGACTTATCTAGGGTCACGGAAAAACCTCATCACTAGCATGTCGTCTCTCGGTCTGACTCACATCCCGGCGTACACCCTACTCGAACGCGTGGCCTCTGTCAGTGGATGATACCATTTGAATTTTAGCAAAGTCGAGCTTGCTGCTGTCCGGGTGGACTCTGTGTCTCTGTTTTTGGAATGTGCAGTGCTGAATCGTACCCACC-GTGCggctgctctgtacagttgtggagtt-cgtgcactgtacaaaggcccaggcagagggttgagaggggctgagacccaggctgctttctgcacaccaggctgGAGCTGACTGCCTA----GAGCAGGGGCCTCGTTCCTGTTTGCACCAGGGCCCATCAGCTTGATGGGATGTGTGTGCTTAAAGAA-GGGGTGTGTTTTTCTAATTCACATTTATAATCCTAGTTTCTAGAATGAATTCTAATTTCTAATTCACATAAC-GCTGACAGGGCCGTGTTTGTTGGTATTGTATGATTCAGC--ATGCTTTTCCCAGGGTTGAG--GGAAGTCAAGTATCGGCTTTTAATGGGTAACGAGGC---Agcttcaggcacggctggatccagggtcttagctgacgtcagccgcactctcccttctacgtcatgtgcttgagt--------------ctctgtgttggcctcagt--------ttcTCCAGATGTGTTTATGAGCTCCCTGCCCTT----CATGGCTAGAAACCCGGGTTCAGGCTCTGGCTGGCTGTGCGCTCACCGTGTGGAACTACCACGGGTCCTGGCTGGGTGGGGAACTCTGCTGCCAGCCAGGACACTTAGCAACCATGCCGGGAGCTTCTCCAGAAGCCCCCCGGGAG-GAGGGAGGTGGGGGGC s panTro1.chr6_random 347233 1095 - 67355074 CAGCTTTGGGGCTTTTAGGGCCCAGTCTAGGCTTTCCTTCTTGGTTCCGTGGTTCCTATCTAGGGTGgtcactcagccctgcggagccgcagtttctgcctctggaaaataaggataaaagtatgttcccctct--cagggttatctgttgcgaggTCGATGTGGGTCAGTGTGTCCAAGAGCCCCCCT----CCCTGACCTGGAGTGGGCGTTCAACACAGCAAGTTCCCTCCTCCCTCCTTTCTCCACACCCCAGGGGACTTATCTAGGGTCACGGAAAAACCTCATCACTAGCATGTCATCTCTCAGTCCGACTCACATCCCGGCGTACACCCTACTCGAACGCGTGGCCTCTGTCAGTGGATGATACCATTTGAATTTTAGCAAAGTCGAGCTTGCTGCTGTCCGGGTGGACTGTGTGTCTCTGTTTTCGGAATGTGTGGTGCTGGATCGTACCCACC-GTGCAgctgctctgtacagttgtggagtt-cgtgcactgtacaaaggcccaggcagagggctgagaggggttgagacccaagctgctttctgcgcaccgggctgGAGCCGACTGCCTA----GAGCAGGGGCCTCATTCCTGTTTGCACCAGGGCCCATCAGCTTGATGGGATGTGTGTGCTTAAAGAA-GGGGTGTGTTTTTCTAATTCCCATTTATAATCCTAGTTTCTAGAATGAATTCTAATTTCTAATTCACATAAC-ACTGACAGGGCCCTGTTTGTTGGTATTGTATGATTCAGC--ATGCTTTTCCCAGGGTTGAG--GGAAGTCAAGTATCGGCTTTTAACGGGTAAGGAGGC---Agcttcaggcacggctggatccagggtcttagctgacgtcagccgcactctcccttctacgtcatgtgcttgagt--------------ctctgtgttggcctcagt--------ttctcCAGATGTGTTTATGAGCTCCCTGCCCTT----CATGGCTAGAAACCCGGGTTCAGGCTCTGGCTGGCTGTGCACTCACCGTGTGGAACTACCACGGGTCCCGGCTGGGTGGGGAACTCTGCTGCCAGCCAGGACACTTAGCAACCATGCCGGGAGCTTCTCCAGAAGCCCCCCAGGAG-GAGGGAGGTGGGGGGC s canFam1.chrUn 89257723 969 - 91062872 CAGCTTTGGGACTTGTAGAGCCCAGTCTGGG--TTTATTCCTGCTCCTATGATCCCAGTCTA-GGTGGTCACTTGCCCCTCTGAGCCTGC---CTCCTCCTCTGGGG---ATGAATGTAATTATGTCCTCATTTGACAGGACTCTC----ACAAAGTT-AGGCAGATCCAAGTGTCTGACAGACCCGCTGCTGCCCTGGCCT-GAGCACTTGTTCATTGTCACCA--TTCTCCCTCCCACCTTTGTCTA---------------GTCTGTGGTCACTG-----------------------GCCTCTCCATCCTTTTCACATCCCAG------------GTGAACTTCTAGCCCCCATCGATGGATAA-----------------------------GGCTGCT-----GGTGGATTGCATGTCTGTGTTTTCTGAAAGTGCCGTACTTGCCAGTACTCGTTGGcagggctaccatatatagttatggagttgtgtacattgtgcaaagg--------------gatgaggggctgaagtccagactgctctctctctgccgggctgGAGCTGGCTGGCCATAGGGAGGCTGGACTTCCTCTTCATTTGCTTATTAGGCCACCAGCTCACCGGGA--TGCATGCTTGAAGAATGAGGTGTCTTTTTCTAATTCACATTCA-GATTCTAATTTTGGGGGTGGATTCTCATTTCTAATTTACATAAAGGCTGATGGG-----GTTCACAGGTTTTGTCTTATTCAGCCAATGTTT-------GGTTGGGAAAGAAGCAGCTCCTTGACTCTTC-----TCACCAGGCATGAGTTTTAGGCACATCCAG-TCCAGGGAATTCACTGATGTTGGCTG----CTCCCATTTATG---TGTGTCTGACTGAGGTGAGGGTGTGCAGTGAGCTGG-CTCAGTCAGGGCCCCTCACCAT-TGTATCTTGGGGATACCTGCCCTCAGCACAGGG---AAAGCCCAGTGTGGGACTCTGGTGGATTGAGTGCTCACTGTGTGGACCCGTCACTGGCCCAGCCTGGATGAGG-TCACTGTTGCTGGCAAG-------------------GGGAGGTAC------AGCTGCCTGGATGTGGGGGAGACGTGGGGC a score=5844.0 s hg17.chr7_random 677696 62 + 778964 ATAGGACACCGTGGCAGCTCACGCAGACTCCGAGTCGTCGAGGGCTTTGGGGACTTGGAATG s panTro1.chr6_random 348328 62 - 67355074 ATAGGACACCGTGGCAGCTCACGCAGACTCCGAGTCATCGAGGGCTTTGGGGACTTGGAATG a score=2435.0 s hg17.chr7_random 677758 12 + 778964 CTTGGAGGGTCT s panTro1.chr6_random 348390 12 - 67355074 CTTGGAGGGTCT s canFam1.chrUn 89258908 12 - 91062872 cTCAAAGGGTTT a score=5796.0 s hg17.chr7_random 677770 15 + 778964 -CATTTAAAAGTTGAG s panTro1.chr6_random 348402 15 - 67355074 -CATTTAAAAGTTGAG s rn3.chr12 16128776 15 + 46649226 -CATTTAACTGCTGAG s canFam1.chrUn 89258920 16 - 91062872 CCTTTTAAGAGTTGAG a score=9416.0 s hg17.chr7_random 677785 42 + 778964 AGTCATTTGGGGAAATCTGGAAACGTCAGGATGAT--CCAGGTA s panTro1.chr6_random 348417 42 - 67355074 AGTCATTTGGGGAAATCTGGAAACGTCAGGATGAT--CCAGGTA s mm5.chr5 12773031 42 - 149219885 AATTGCTGAGAGGAGTCTGCAAGCGTGGAAAGGCT--CAAAGCA s rn3.chr12 16128791 34 + 46649226 ----------AGGAGTCTGCCAGCTTGGGAAGGCTGACTGAGAT s canFam1.chrUn 89258936 42 - 91062872 AGTCATTTGGAGAAATTTGGAGATACTGAAACAAT--TCAGGCG a score=8701.0 s hg17.chr7_random 677827 40 + 778964 TGAAGATTCACC-----------TTCTTG-TCTGTTTTTTACTTTC-TCCCGA s panTro1.chr6_random 348459 40 - 67355074 TGAAGATTCACC-----------TTCTTG-TCTGTTTTTTCCTTTC-TCTCGA s mm5.chr5 12773073 34 - 149219885 --GCGACCCACC----------GGCCTTGTTCTGCTTTTTTCTTTC------- s rn3.chr12 16128825 36 + 46649226 CAGTGACCCACC----------TGCCTTGTTCTGCTTTTTTCTTTC------- s canFam1.chrUn 89258978 41 - 91062872 TGAAGACCCACC-----------TTCTTC-TCTGTTTTCTCCTTTTTTTCCAA s danRer1.chr5 6891703 49 + 40038624 TTAATGTTCACCTTTTCCGCGCTTGCTTAATCTTGTTTTTACTCTG-TGT--- a score=110524.0 s hg17.chr7_random 677867 71 + 778964 ACAGGGCAGCACGCTGAGGAAACGCAAGATGTACGAGGAGTTCCTCAGCAAGGTCTCCATCCTAGGTCAGT s panTro1.chr6_random 348499 71 - 67355074 ACAGGGCAGCACGCTGAGGAAACGCAAGATGTACGAGGAGTTCCTCAGCAAGGTCTCCATCCTAGGTCAGT s mm5.chr5 12773107 71 - 149219885 ACAGGGAAGCACACTGAGGAAACGCAAGATGTATGAGGAGTTCCTCAGCAAAGTCTCCATCCTAGGTCAGT s rn3.chr12 16128861 71 + 46649226 ACAGGGAAGCACACTGAGGAAACGCAAGATGTATGAGGAATTCCTCAGCAAAGTCTCCATCTTAGGTCAGT s canFam1.chrUn 89259019 71 - 91062872 ACAGGGCAGCACACTGAGAAAGCGCAAGATGTATGAGGAGTTTCTCAGCAAGGTCTCCATCCTGGGTCAGT s fr1.chrUn 293243774 71 - 349519338 ACAGGGCAGCACACTGAGGAAGAGGAAGATGTATGAAGAGTTCCTCAGCAAGGTCTCCATCCTTGGTAAGC s danRer1.chr5 6891752 71 + 40038624 TTAGGGAAGTACTTTAAGAAAGAGGAAAATGTATGAGGAATTCCTTAGCAAGGTGTCCATTTTGGGTGAGT a score=-1572.0 s hg17.chr7_random 677938 7 + 778964 GG--CTGC--------G s panTro1.chr6_random 348570 7 - 67355074 GG--CTGC--------G s mm5.chr5 12773178 15 - 149219885 CT--CTGCTGCCTGCGG s rn3.chr12 16128932 17 + 46649226 GGCTCTGCTGCCCGCAG s canFam1.chrUn 89259090 7 - 91062872 GG--CCCC--------A s fr1.chrUn 293243845 5 - 349519338 ----CTGC--------G a score=26281.0 s hg17.chr7_random 677945 151 + 778964 CCCCTGCACG-----------GCTGTGT-----------GTCCCGACATCTGGGCGCCTGCTGGCCACCCCGGCCTCTTCCCCATTCCCTGCGTGGCTGGCAGT-TGAGTGTTG-TTGGTATTATGGAGGTTTGGG----GTGCA---------------------------ACAC------------------------ACAGGCATGCTCACGCACAGA--------------------------CACGTGCAC------ s panTro1.chr6_random 348577 151 - 67355074 CCCCTGCACG-----------GCTGTGT-----------GTCCCGACATCTGGGCGCCTGCTGGCCACCCCGGCCTCTTCCCCATTCCCTGCGTGGCTGGCAGT-TGAGTGTTG-TTGGTATTATGGAGGTTTGGG----GTGCA---------------------------ACAC------------------------ACAGGCATGCTCACGCACAAA--------------------------CACGTGCAC------ s mm5.chr5 12773193 129 - 149219885 CCTCTCTGCA-----------GCC----------------TCCCG-----TGAGCGCCTGCAATCAGCTCACATCTCCTTC----TCCCTGTGTGGCTGACGGG-TCACCTCTGCTTAGCATTACACAGGTTTGGG----------------------------------------------------------------ACATGCATGCTCACGTGCAAG--------------------------TGCAGACAC------ s rn3.chr12 16128949 129 + 46649226 CCTCTCTGCA-----------GCC----------------TCCCG-----TGAGCACCTGCAATGAGCTCACATCTGCTTC----TCCCTGTGTGGCTGACAGG-TCATCTCTGCTTAGCATTCCGCAGGTTTGGT----------------------------------------------------------------ACATGCATGCTCACATGCAAA--------------------------TGCAGACAC------ s canFam1.chrUn 89259097 258 - 91062872 ACCCCGTATGAGACTCTCTGTGCTATGTGGCTTCCTCCAGTCTCG---TCTGAGTCTTGCCTGTTGACCCCAGTCATTTCCACATTCCCTGCATGCCTGGCAGGCTCAGTGCTC-TTGTTGATGTGCAAGTTTGGGACATGtacacgtatgtaccctcacaggcatgctcttacacatgtatgcacatgtatgcactccgacaggcatgctcacacacgtatatacccacacacatgtatgtatccccacaggcatgctcac a score=1607.0 s hg17.chr7_random 678096 5 + 778964 AGATG s panTro1.chr6_random 348728 5 - 67355074 AGATG s mm5.chr5 12773322 5 - 149219885 ATGTG s canFam1.chrUn 89259355 5 - 91062872 atatg a score=40730.0 s hg17.chr7_random 678101 323 + 778964 ACACACACTGTCACT------------TGTTGGCAAACCCCAAGAGC-CTGCCTCCTCTCTCGTGGGCGGGGCTG-CCCTGCTTCTCAACGTCTCTGC-----CATC-------CTGTGCGTTTCCTGTCTGCTTCTCCCTTTGCTGTCAGAGCCGCGCCCCCAGCCTTCCCTCCACACCAGTCCGTGTAGAGCTGAAAGCCAGTGTTGGCTCCCGGTACACGT-GTGAGCTGGGTCGAGCTGCTTTCCCTGACCTGTGCTAGTTCCCTT-CTAAGCGCAGTTTCTCTGGGAGCCGCCTCTGCCCTTTCTACGCCGCCATCATTGCTCTCAGTTCCGGGAAGGATAACGGC s panTro1.chr6_random 348733 323 - 67355074 ACACACACTGTCACT------------TGTTGGCAAACCCCAAGAGC-CTGCCTCCTCTCTCGTGGGCGGGGCTG-CCCTGCTTCTCAACGTCTCTGC-----CATC-------CTGTGCGTTTCCTGTCTGCTTCTCCCTTTGCTGTCAGAGCCGCGCCCCCAGCCTTCCCTCCACACCCGTCCGTGTAGAGCTGAAAGCCAGTGTTGGCTCCCGGTACACGT-GTGAGCTGGGTCGAGCTGCTTTCCCTGACCTGTTCTAGTTCCCTT-CTAAGCGTGGTTTCTCTGGGAGCTGTCTCTGCCCTTTCTACGCCGCCATCATCGCTGTCAGTTCCGGGAAGGATAACGGC s canFam1.chrUn 89259397 325 - 91062872 acccacacagacacgctcacacacatatgcacacacacCCCAAGAACTCTGTGTCTGCTCCCCCAGGCCACCATGACCCCTCTGCTCAA-GTGTTTGCACTTTCATCCCAGAAGCTGTGGG-----TGTCTGTTCCTCC----ACCACC--AGCATCCCCTCCAGCCCTTCCTCCATGTCCATCAGTTCTGAGCTGAAAGCCCATCTCGTGTTCCAGTAAATGTAGCACACTGTGCTGAGCTGCCTTCGCTGACCCTTTTTGGTTTTTTTGCTAAGTGTGGTTTTTCCTGCTGC-ATTTCTGTCCTTTC-------------TTGTCCTGGGGTCTGATAAATATGATGGC a score=121353.0 s hg17.chr7_random 678424 1414 + 778964 AGGCTGGGGTTTCAGGTGTGCCCAGGGCCCTTTCACCTTCGGGTGAGCCTGCTTAACGGCCTGGCAG--------------------GAAAGACGCTGCTGAAGCCTGAGTTATACGCGATGGCGCCAGCTGGGCCAGTGGGGGCTCCTTGGGCTAGAGCAGGCAGAACCGTGCAGgtgtgtgggggtgagtgtgcacatgggggtgtgtgtgcgtgtgtgtgcatga--gtgtgcatgtgagtgcacatgggtgtacac--gtgagtgtgcatgggtgcgagtgcacatgcatgggtgtgtgcatgtgtgtAGAATGCGTGTGAATTGCACGTGTGTGAGGGTGTGAGTGCACCGTGTGGGTtgtgtgtgggtgtgtgcgcatgggtgtgcatgcatgtgagtgtgggggtttgagtgtgcacgtgtgagg--gggtgtgtgtgcacctgggagtgtgcaagtgtgtgtgcatgggtgtgcacgca--tgtgtttg-----gcacgtgtgtgagtgggtgtgtgcacgcgtgtgtgggtgtgtatgggtgtgcacacacgtgtgtgcgtgggtgtgagtgcacgtgtgt--gagtgggtgtgagtgtgcactgtgggtgtgtgc--gtgtgtgcgtgggtgtgcacacgtgtggggggtgtgagtgtgcacatgtgtgagtgggtgtgtgcgcctgtgtgtgtgcacgtgtgtgtATGCAGTGTGGCTGTGCCTGTGTTCCTTCTTGGGGAGGACTTTGACCCCTGTTCTCTCTGAAATCCTTCTGTGAAATGTCGAGAAAGGAGCGTGCGGGTCTTTCCattgtggtaaaatgcacgtcacagcacgccgaccgttttgacctttcccggaagcgcatttcagggccgttgagtctacacacgacgttgtcggcaccgctcccatcccagagccccgtcctcacccgagacagagccccgtccctgtgagccgtcaccccccctgccctcccggccctggcagcccccggaccctcctggtctctgtggattatttgcctgctcgggacgtttcgtgggaatggaatcacctgtgtggctttgtgtctggtttTAATTCTAGTGCCATTTTGAAAATGTCATACTTGGAAACACAAAACGAGTTGGTCCGCCAGATTTTATAGGGGCCGAGAGGGGGACATTTGCTCCCTCTGCAAAATCCCAAACGCAGGGCCTCTGCCGCCCGTCTGGGCGTCCCGCTGCCTTTCAGCCAGACCTGGGTGGTCCGGCCCCTGGTGCCCACCAGGCACTGCATAGTCAGCCCTGTGCCCACAGACTCCTTCATTCACCAGCGCTGTCGAGACAACGGTTGCTGCAGGCCATGAAGGGCGAGACCCTCTCCCTGCTCCGGGCGAGGGCTGGTGACCCCCCGGCTGGAGGTGGCTTCTTGCTTCCTGCGTCCCGGGCTCT s panTro1.chr6_random 349056 1433 - 67355074 AGGCTGGGGTTTCAGGTGTGCCCAGGGCCCTTTCACCTTCGGGTGAGCCTGCTTAACGGCCTGGCAGGAAAGATGCTGCTGAAGCCTGAAAGATGCTGCTGAAGCCTGAGTTATACGCGATGGCGCCAGCTGGGCCAGTGGGGGCTCCTTGGGCTAGAGCAGGCAGAACCGTGCAGGGgtgtgtgggtgagtgtgcacatgggggtgtgtgtgcgtgtgtgtgcatgagtgtgtgcatgtgagtgcacatgggtgtacacgtgtgagtgtgcatgggtgcgagtgcacatgcatgggtgtgtgca--tgtgtAGAATGCGTGTGAATTGCACGTGTGT--GGGTGTGAGTGCAC--TGTGGGTtgtgtgtgggtgtgtgtgcatgggtgtgcatgcatgtgagtgtgggggtttgagtgtgcacgtgtgagagtgggtgtgtgtgcacctgggagtgtgcaagtgtgtgcgcatgggtgtgcacgcatgtgtgtttgggagtgcacgtgtgtgagtgggtgtgtgcacgc--atgtgggtgtgtatgggtgtg----cacgtgtgtgcatgggtgtgagcacacgtgtgtgagagtgggtgtgtgtatg---tgtgggtgtgtgcatgtgtgtgcgtgggtgtgcacacgtgt-gggggtgtgagtatgcac--gtgtgagtgggtgtgtgcacctgtgtgtgtgcacgtgtgtgtgtgCAGTGTGGCTGTGCCTGTGTTCCTTCTTGGGGAGGACTTTGACCCCTGTTCTCTCTGAAATCCTTCTGTGAAATGTCAAGAAAGGAGCATGCGGTTCTTTCCattgtggtaaaatgcacgtcacagcacgccgaccattttgacctttcccggaagcgcatttcagggccgttgagtctacacacgacgttgtcggcaccgctcccatcccagagccccgtcctcacccgagacagagccccgtccctgtgagccatcaccctccctgccctcccggccctggcagcccccggaccctcctggtctctgtggattgtttgcctgctcgggacgtttcgtgggaatggaatcacctatgtggctttgtgtctggtttTAATTCTAGTGCCATTTTGAAAATGTCATACTTGGAAACACAAAACGAGTTGGTTCGCCAGATTTTATAGGGGCCGAGAGGGGGACATTTGCTCCCTCTGCAAAATCCCAAACGCAGGGCCTCTGCCGCCCTTCTGGGTGTCCCGCTGCCTTTCAGCCAGACCTGGGTGGTCCGGGCCCTGGTGCCCACCAGGCACTGCATAGTCAGCCCTGTCCCCACAGATTCCTTCATTCACCAGCGCTGTCGAGTCAACTGTTGCTGCAGGCCATGAAGGGCGAGACCCTCTCCCTACTCCGGGCGAGGGCTGGTGACCCCCCTGCTGGAGGTGGCTTCTTGCTTCCTGCGTCCCGGGCTCT a score=52115.0 s hg17.chr7_random 679838 544 + 778964 TAGGGGCCGTCGCACGCCCTGGCCGCGTGGCCTCCGTCCGCCCATTTATGTT-CCTCTGATTAATGCAGCAGCCAGCAATGTGACCGGCTTCTCCGTGGCCTCCCAGAAGAGTAAC-CACAAGGCACGATTCCCTTTTCCTGCCCAGTCAGCAT--CGGCACAAAGTCCTCCAAAAAGTGGCTGGCGGGGCGGTGTCTCCGCAGGCAGCTTGGCCGGAGGGATGGCCCTGGATGAGCCTGAAGCCGTGGGCTTCGGCATTTCTGTCCCCACACCAGAAA----CCTGG-GAACGGCTTTTGTGCCTGGATGCTCCTGGGACCCCGCTTTCTCCTGAACGCGCAGGGCTCGGCCCCTAGGACAGGAGACCCCGTAGAATCAGCATGGCCCACATGGGAGCTGCAAGTCTGCAGAATTCCAGCACAGAGCTTGACGATGGG-TTCCCCCCTGGGCAGGTGCACGCAGCCTTACGACGTCTCGTCCTGTGGCTGCAGGCTGCC--------------CTTGTCAGGTG--------CTTTTTGGGACACGTGACTGCGTTTATTCTGCAGTTTACATGG s panTro1.chr6_random 350489 547 - 67355074 TAGGGGCCGTCGGTCACCCTTGCCGCGTGGCCTCCGTCCGCCCATTTATGTTCCCTCTGATTAATGCAGCAGCCAGCAATGTGACCGGCTTCTCCATGGCCTCCCAGAAGAGTAACGCACAAGGCACGATTCCCTTTTCCTGCCCAGTCAGCAT--CGGCACAAAGTCCTCCAAAAAGTGGCTGGCGGGGCGGTGCCTCCGCAGGCAGCTTGGCCAGAGGGATGGCCCTGGATGAGCCTGAAGCCGTGGGCTTCGGCATTTCTGTCCCCACACCAGAAA----CTTGG-GAACGACGTTTGTGCCTGGATGCTCCTGGGACCCCACTTTCTCCTGAGCGCGCAGGGCTCGGCCCCTAGGACAGGAGACCCCGTAGAATCAGCATGGCCCACATGGGAGCTGCAAGTCTGCGGAATTCCAGCACAGAGCTTGGCGATGGGTTTCCCCCCTGGGCAGGTGCACACAACCTTACGACGTCTCGTCCTGTGGCTGCAGGCTGCC--------------CTTGTCAGGTG--------CTTTTTGGGACATGTGACTGCGTTTATTCTGCAGTTTACATGG s canFam1.chrUn 89262223 492 - 91062872 TAAGCACCTTTTCATGCTCTGGTCACA-----CCTGTCCATAAGCTT-TGTTCCCCCCGATGAATGGATT-GCCAGTGA-GT-----GCTTCTCTGCGGCCATTGGGCAGAGCAGC-CACGAGACTCA---TCCCTTCGCTG-TCAGTCACCCCGACTGCACAGAATCCTCCAGAGGGAGGTCTGCGGGG------------AGGCA-------CGGAAGTCTTGCTCTG--CCAGCCT---GCCCTCAGCT----CACATCCCTCCGC-CAGCAGGAAGGGGCATGGCGGGGGGCAGTTGTGCATTTGGGGCCTGGAGGTCTGGTTTCTGTGCGTGGACACTGGGGTCGG--CCTGTGACGGGC----------ACTGAACCTGGCAGGCTTGAGGGAGGCATGAGCCCAGAA-GCCACCCCGGCGCTCTGTGTCTGG------------------------CACCTCACATGGTCTCAGGCTGCGGCTGCTGGCTGCCTCCTGCAATCATGTCTGGTCCGATGTTGAGATCCCTCTTAGGAAAGGGGCCTGTTGCTTCCCTGTAGGGTAGACAG a score=31728.0 s hg17.chr7_random 680382 337 + 778964 TGAATGGGGATGGATCCCATCTGTGCAAAATAAAAAATTagctggacatgatggtacatgcctgcagtcccagctacttgggaggctgaggtgggaggatcacttgaggccatgaactccagaccagcctcgataacatagcgagttcctgtctctccaaaaaatttttaaaaagttagccgggtgtggtggctcatgtctgtaattccagcactttgggaggccgaggtgggaggatcgcttgagcccaggagttcaaggctgtggtgagccgtgatcacgccactgcactccaggctgggtgacagagcgagaccctgtctcttgaaaaaaaaaa s panTro1.chr6_random 351036 337 - 67355074 TGAATGGGGATGGATCCCATCTGTGCAAAATAAAAAATTagctggacatgatggtacatgcctgcagtcccagctacttgggaggctgaggtgggaggatcacttgaggccatgaactccagaccagcctcgataacatagcgagttcctgtctctccaaaaaatttttaaaaagttagccgggtgtggtggctcatgtctataattccagcactttgggaggctgaggtgggaggatcgcttgagcccaggagttcaaggctgtggtgagccgtgatcacgccactgcactccagcctgggtgacagagcgagaccctgtctcttgaaaaaaaaaa a score=273.0 s hg17.chr7_random 680719 1 + 778964 T s panTro1.chr6_random 351373 1 - 67355074 T s mm5.chr5 12774597 1 - 149219885 T a score=36928.0 s hg17.chr7_random 680720 110 + 778964 GGGGCCAAAAG-----TGCCATCTCCCTGTGGTTTCTTCTGTCAGTTTTCATCCAAGATTAATGTAGCCAGGAGATAAT-----------TTTTGTTTTTAGAACTCAGAATACTACAGGTTTCAA s panTro1.chr6_random 351374 110 - 67355074 GGGGCCAAAAG-----TGCCATCTCCCTGTGGTTTCTTCTGTCAGTTTTCATCCAAGATTAATGTAGCCAGGAGATAAT-----------TTTTGTTTTTAGAACTCAGAATACTACAGGTTTCAA s mm5.chr5 12774598 120 - 149219885 GGTGCCAAATACTGGCTGCCACCT--TTACAGTTACT----TCAGTTTTCACCTAAGATTTATGCTGTTAGGAGGTAATACTGTGGCAAATCTGGTTTTCTAACCTTGGAATGGTACACATTTAAA s rn3.chr12 16130240 120 + 46649226 TGGGCCAAATACTGGCTGCCACCT--TTACAGTTACT----TCAGTTTTCACCTAAGATTTATGCTGTTAGGAGATAATGCTGTAGCAAATCTGGTTTTCAAACCTTGGAATAGCGCACATTTAAA s canFam1.chrUn 89262819 119 - 91062872 GAGGCCAGAAG---ACTGCCATTC--CCCTTGTGTCTTCTGCTGGTTCTC--CTGAGATTTCTGCCACTGGAGGACACAGCTCTGCGTGTCTTGACCTTCAGACTGCAGAGTATTACACGTTTCCG a score=6408.0 s hg17.chr7_random 680830 49 + 778964 ATGTAATAGAGTAAGCATTTGCTAATCAAATATGTGGAAATGAACTTCC s panTro1.chr6_random 351484 48 - 67355074 ATGTAATAGAGTAAGCATTTGCTAATCAAATATGTGGAAA-GAACTTCC s canFam1.chrUn 89262938 45 - 91062872 ATGTAATGGAGAAATCA---GCTGATGGGACG-GTGGGAATGGACCTTC a score=91.0 s hg17.chr7_random 680879 1 + 778964 T s panTro1.chr6_random 351532 1 - 67355074 T a score=15634.0 s hg17.chr7_random 681300 185 + 778964 agtagagacggcgtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccgcctcgg-cctcccaaagt-gctgggattacaggcgtgagccaccgcgccc-agctGGTACGGACCCTGTTTTTAGGAAGCTGGTCAAACAGCTCTGGTTGTGGGGTCCTCGCCCCCCTTCCC s panTro1.chr6_random 351969 188 - 67355074 agtagagacagggtttcaccgtgttagccaggatggtctcgatctcctgacctggtgatccgcccgcctcgggcctcccaaagttgctgggattacaggcgtgagccaccgcgcccCAGCTGGTACGGACCCTGTTTTTAGGAAGCTGGTCAAACAGCTCTGGTTGTGGGGTCCTCACCCCGCTTCCC a score=1989.0 s hg17.chr7_random 681485 12 + 778964 TATGCTGCAGAA s panTro1.chr6_random 352157 12 - 67355074 TATGCTGCAGAA s rn3.chr12 16132018 12 + 46649226 TACACAGCAGGG a score=4667.0 s hg17.chr7_random 681497 21 + 778964 TCTGCCCGGC--------------CCTGGGGTTCG s panTro1.chr6_random 352169 21 - 67355074 TCTGCCCGGC--------------CCTGGGGTTCG s mm5.chr5 12776046 35 - 149219885 TCTGCCCAGCAGGGTTCCCTGAAGCCTGGGGTTCC s rn3.chr12 16132030 21 + 46649226 --------------TTCCCTGAAGCCTGGGGTTGG a score=138833.0 s hg17.chr7_random 681518 416 + 778964 TGGGAAGCATTTTCC-TTTGCAACCTACGGCGCCGACAGGGATTTTTAAGGAGAGAAATCTCCCTCCTAACCTAGATGTAAAATAAATGCTTT----GCTTTTTATTTTTAGCTTCTGACCTACATAGGTAGCATCTGATTTGTATAGGCCAGGAAACGTTTGTTTTTTTTTTTTTTTTTTTGTCAAAAAAGAA------ATCGTTAATCA-GGTGATCATTATTTTCTTATAAAATCTG---ACGTTAGTAAATTTTTTTTCCT-TCCAAGGGTTAGGGATGAATAAAGACAGGGAAGGGAAGACCTTGTGAGAAG-GGCGGAAAGATAACATTGAGTTTGCAAGCATTTAAAGATAAACTTGGCATGGGAAGTAA----------------------GCATTTTGACCTAAAATAGTAGAACGTATACTGTGCCTTAATGTTGCAACATAAAT s panTro1.chr6_random 352190 410 - 67355074 TGGGAAGCATTTTCC-TTTGCAACCTACGGCGCCGACAGGGATTTTTAAGGAGAGAAATCTCCCTCCTAACCTAGATGTAAAATAAATGCTTT----GCTTTTTATTTTTAGCTTCTGACCTACACAGGTAGTATCTGATTTGTATAGGCCGGGAAACGTTT------TTTTTTTTTTTTTTGTCAAAAAAGAA------ATCGTTAATCA-GATGATCATTATTTTCTTATAAAATCTG---ACGTTAGTAATTTTTTTTTCCT-TCCAAGGGTTAGGGATGAATAAAGACAGGGAAGGGAAGACCTTGTGAGAAG-GGCGGAAAGATAACATTGAATTTGCAAGCATTTAAAGATAAACTTGGCATGGGAAGTAA----------------------GCATTTTGACCTAAAATAGTAGAACATATACTGTGCCTTAATGTTGCAACATAAAT s mm5.chr5 12776081 421 - 149219885 TTGGAAATGTGACCCTTTTGCAG--TGTGGGCACGGCAGGGGATTTAAAGGAGGCACATTTCCCTGCTAACCTAGATCTAAAATGAATGCCTTTTTAAATTTTTATTTTTAGCAGCTGGCCTACATATGTAGCATTGAA---GAGCAGGCCAGAAAGGGT--------TCTTTTTGCAGCTAGGCAATAGGGAGGGGGATATAGTTAAAAAGGGTGACCATGGTTTTCTCACAGAAAATGCCCACTTTCTTATGTTTTTCTTCCTATCTGAGGGC----------------CGGGGAAGGGAAA---CTGTGTGCAG-GATTCAGGGGC-CTGCTGTGTTTATAAGCATTTAAAGGTAAACTCAGCCTCAGAATTAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCTAAAATAGTAGCAAGTGTGTCCCTTCTGGATGCCAGAACATCAGT s rn3.chr12 16132051 396 + 46649226 TTGGAAATGTGACCCTTTTGCAGTGTGGGGCACAGGCAGGGGATTTAAAGGAGGCATATTTCCCTGCTAACCTAGATCTAAAATGAATGCCTTTTTAAAATTTTATTTTTAGCAGCTGGCCTACATATGTAGCATTGAA---GCATGGGCCAGAAAG-GT--------TTCTTTCGCAGCAAGGCAGTAGCGGG--GGATATAGTTAAAAA-GGTGACCATGATTTTCTTGCAGAAAATGGCCACTTTCTTATGGTTTTCTTCCTATCTGGGGGT----------------CAGGGAAGGGAAG---CTGTGTGCAG-GATTCAGGGGC-CTCCTGCGTGCATAAGCATTTAAAGGTAAAC--GGCATCAGAATTAAC---------------------AATTTTTTGCCTAAAACAGTGGCAGGTGTGTCCCTTCCGGATGCCAGAACATCAGT s canFam1.chrUn 89263131 393 - 91062872 TGCGAAAGCTCGTCC-TTTGTA-CGCACAGCATTGGCAGGCGTCTTAAAGCAGAGAAATCCCGCTCCTAACCTAGTTCTAAAATAAATGCTTT----GCTCTGTATTTTTAGCCGCTGACCTACTTAAGTAGCATCTGATAAGTATAGGCCAGGGAAGGT--------TTTTCT--------GCCAAAAAAGAA------ATAGTTAATCA-GACAATCGTTTTCTTCCAAAGGAGCGTA---TTGTTTTTTTTTCCTTTTCCTT-CCTGAGGGTTAGGGATGGACAGTGACA-GGAAGGGAAG---GTATGGGGAGAGGCAGAAAGGT-ATGTATAATTTGCAAGC-TGTAAAGATGAGCGTGGCATTGGAATTAA----------------------GTATTTTGACCTAAAATAATGGAAGGCGTGCAATGCAC-ATTGCTGTGACATAAAT a score=7186.0 s hg17.chr7_random 681934 61 + 778964 GCAGTTCCATGTTGTTTGATCAGTCCCCTGATGAACAGTGTTTCTTTTCGATGGGCAGTTA s panTro1.chr6_random 352600 61 - 67355074 GCAGTTCCATGTTGTTTGATCAGTCCCCTGATGAACAGTGTTTCTTTTCGATGGGCAGTTA s canFam1.chrUn 89263524 47 - 91062872 GCATTTGCA-GTTG-------AG--CCGTGATGAATGGTGATTCT----AGTGAACAGCTA a score=100.0 s hg17.chr7_random 681934 1 + 778964 G s rn3.chr12 16132447 1 + 46649226 G a score=58303.0 s hg17.chr7_random 681995 631 + 778964 CCATTCTGAATTATTTTGTTATTCATGTATTATTATTAt-tttttttgtattttagtagagatggggttttgccatgttgaccaggctggtctcgaactcctgagctcaggcaatccacccacctcagcctcccaaagtgctgggattacaggcttgagccactgcacccggccagtttttctgtttttttcttttttcttttttttttttttttgagacagggtgttgctctgtctcccaagctggagtgcagtgacgtgatcatagctcactgcagccgcgacctcccgcgctcaagtgatccttttgcctcatcctcctgaggagctgggaccacaggtgtacaccaccacgcctggctaattttttaatttttgtagagacgagatctcactgtgttgcccaggctggtcttgaactctggcctcaagcgatcctcccgccttagcatcctgagtagctgagactacaggtacacaccagcatgcctggctgatttaaaacattttttgtagagatggggtctcattatgtcggcctggctggtcttgaactcctggcctcaagcgatcctcctgcctcagcctcccaaagtcttgggatttataggcgtgagcccactgtgcctggc s panTro1.chr6_random 352661 632 - 67355074 CCATTCTGAATTATTTTGTTATTCATGTATTATTATTATAtttttttgtattttagtagagatggggttttgccatgttgaccaggctggtctcgaactcctgagctcaggcaatccgcccacctcagcctcccaaagtgctgggattacaggcttgagccactgcacccggccagtttttctatttttttcttttttcttttttttttttttttgagacagggtgttgctctgtctcccaagctggagtgcagtgacgtgatcatagctcactgcagccgcgacctcctgtgctcgagtgatccttttgcctcatcctcctgaggagctgggaccacaggtgtacaccaccacgcctggctaattttttaatttttgtagagacgagatctcactgtgttgcccaggctggtcttgaactctggcctcaagcgatcctcccgccttagcatcctgagtagctgagactacaggtacacaccaccatgcctggctaatttaaaacattttttgtagagatggggtctcattatgtcggccaggctggtcttgaactcctggcctcaagcgatcctcctgcctcagcctcccaaagtcttgggatttacaggcatgagcccactgtgcctggc a score=26095.0 s hg17.chr7_random 682626 235 + 778964 TTCTGAGTTATTTTAAACCACTTAGTAGGCTTTGTGCTTAGCTGGGACTCCATTGTTTGCAAAAATGTAAGCAGCTCTATTCTTTTGAAG-TAACAAAAGTATTTTCATACTGAGTTAACCTGGAGTCAGTTTTCACTGCTGGGTATTTACATTAAGCCAGGGATAAGTGTCAGAATAGCTCCCTCCGCAACTGGTGAAGAGGGCACATGAGCTGCATGCGTCTGG---GACCCACTGA s panTro1.chr6_random 353293 235 - 67355074 TTCTGAGTTATTTTAAACCACTTAGTAGGCTTTGTGCTTAGCTGGGACTCCATTGTTTGCAAAAATGTAAGCAGCTCTATTCTTTTGAAG-TAACAAAAGTATTTTCATACTGAGTTAACCTGGAGTCAGTTTTCATGGCTGGGTATTTACGTTAAGCCAGGGATAAGTGTCAGAATAGCTCCCTCCGCACCTGGTGAAGAGGGCACATGAGCTGCATGCGTCCGG---GACCCACTGA s canFam1.chrUn 89263584 215 - 91062872 CTCTGAAATATTTTAAACGGCGTAGTATTCCCAGTGCTTAGCTATGATGGTGTT-TTTGCAAGAACACAGGCAACT---TTCAACTAAAGATGACAGGAGCGTTTTCATGCTGGGTTCAC--AGGCCCGACTTCCAGCACCCAGCACCTCGGCTAAACCA-CAACGTGTGTGAGCACAGAGCCCG----ATCT----AAG-----ACCCTGTCCCCATACATCCCGCCTGACTCA---- a score=5689.0 s hg17.chr7_random 682861 132 + 778964 CTGCAAGAAAACCCAGGCCCCCT-GGCACAGAGG--TGCTGGGGGACAGCGTCACGGCCTCATCTTATGCAGCTTACTGGTCACGGAGCTGGTGTTG----TGATTGCTTCTGAGGACACCTTTCGGGAA--GAGCGGTGG s panTro1.chr6_random 353528 132 - 67355074 CTGCAAGAAAACCCAGGCCCCCT-GGCACAGAGG--TGCTGGGGGATGGCATCACGGCCTCATCTTATGCAGCTTACTGGTCACGGAGCTGGTGTTG----TGGGTGCTTCTGCGGACACCTTTTGGGAA--GAGCGGTGG s rn3.chr12 16134120 90 + 46649226 CTGCAGGAAATCT---GTCGCCT---------------CTGAGGAG------CACGGTCTCAGGT----CACCTCAGGGATCTGAGAACTGG--------------GCTTCCTAAGAAAGCATCCAAGGA---------TT s canFam1.chrUn 89263799 119 - 91062872 CTGGTGAACCGCCCAGGCCCTCCCAGCATGGAAATCTGCT------------CCCTGTCTCA----------CTCACTGCTGTCCTAGCGAAGGCTGACCCACGGTGCTTCCTGAGAAAGCATTGGGGTGCAGAGCAGGGG a score=0.0 s hg17.chr7_random 682993 29 + 778964 CCCTTGTCTTGGACTGTGGCTGTGGGGGC a score=3425.0 s hg17.chr7_random 682993 21 + 778964 CCCTTGTCTTGGACTGTGGCT s panTro1.chr6_random 353660 21 - 67355074 CCCTTGTCTTGGACTGTGGCT s rn3.chr12 16134210 21 + 46649226 CCATGGTAGTGAAGTGTGGCC a score=-325.0 s hg17.chr7_random 683014 8 + 778964 G-TGGGGGC s panTro1.chr6_random 353681 9 - 67355074 GGTGGGGGC s mm5.chr5 12778438 8 - 149219885 -GTAGCAAC s rn3.chr12 16134231 6 + 46649226 ---AGTGAC a score=516.0 s hg17.chr7_random 683022 2 + 778964 -------GT s panTro1.chr6_random 353690 2 - 67355074 -------GT s mm5.chr5 12778446 2 - 149219885 -------GT s canFam1.chrUn 89263918 9 - 91062872 GTGCACAGT a score=1796.0 s hg17.chr7_random 683024 18 + 778964 GGGCCCCGGGATGACCTG s panTro1.chr6_random 353692 18 - 67355074 GGGCCCCGGGATGACCTG s mm5.chr5 12778448 18 - 149219885 GTGGCCTGTGACCCCTTG s rn3.chr12 16134237 5 + 46649226 -------------TCTTG s canFam1.chrUn 89263927 18 - 91062872 GTGGTGACGGTCTCCTTG s danRer1.chr5 6891966 18 + 40038624 GTGCACACAGATAACATG a score=0.0 s hg17.chr7_random 683042 2 + 778964 TC a score=617.0 s hg17.chr7_random 683042 2 + 778964 TC s panTro1.chr6_random 353710 2 - 67355074 TC s mm5.chr5 12778466 2 - 149219885 TA s rn3.chr12 16134242 2 + 46649226 TA s canFam1.chrUn 89263945 2 - 91062872 TC a score=171828.0 s hg17.chr7_random 683044 149 + 778964 CTCATCCTCCCCCGACAGAGTCCCTGGAGAAGTGGGAGCGTCTGACCGTGGCGGATGCGCTGGAGCCCGTCCAGTTTGAAGATGGAGAGAAAATTGTGGTCCAGGGAGAGCCTGGGGACGACTTTTACATCATCACGGAGGTGAGACGT s panTro1.chr6_random 353712 149 - 67355074 CTCCTCCTCCCCCGACAGAGTCCCTGGAGAAGTGGGAGCGTCTGACCGTGGCGGATGCGCTGGAGCCCGTCCAGTTTGAAGATGGAGAGAAAATCGTGGTCCAGGGAGAGCCTGGGGACGACTTTTACATCATCACGGAGGTGAGACGT s mm5.chr5 12778468 138 - 149219885 C-------CTTCCTGCAGAATCCCTGGAGAAGTGGGAACGCCTGACTGTAGCTGATGCCCTGGAGCCTGTGCAGTTTGAAGATGGAGAGAAAATTGTTGTGCAGGGGGAGCCTGGAGATGACTTCTACATCATCACAGAGGTGAG---- s rn3.chr12 16134244 138 + 46649226 T-------CTTCCTGCAGAGTCTCTGGAGAAGTGGGAACGCCTCACTGTAGCTGATGCCCTGGAGCCTGTGCAGTTTGAAGATGGAGAGAAAATCGTTGTGCAGGGGGAGCCTGGGGATGATTTCTACATCATCACAGAGGTGAG---- s canFam1.chrUn 89263947 139 - 91062872 G-------CCCGCTCTAGAGTCCCTGGAGAAATGGGAGCGCCTGACTGTGGCAGACGCCCTGGAGCCTGTGCAATTTGAGGACGGAGAGAAGATCGTGGTCCAGGGAGAGCCCGGGGACGATTTCTTCATCATCACGGAGGTGAG---T s fr1.chrUn 293245836 149 - 349519338 CTCGTTTTCCGTCCGCAGAGTCGCTGGATAAGTGGGAGCGCTTGACGGTGGCTGATGCCTTGGAGCCTGTTCAGTTTGAAGACGGGGAGAAGATTGTAGTGCAAGGAGCACCTGGCAACGACTTCTTCATTATCACAGAGGTAAAGTCT s danRer1.chr5 6891984 149 + 40038624 CTAACCTTCTGCGAACAGAGTCTCTGGATAAATGGGAACGATTGACAGTCGCTGATGCACTTGAGACAGTCCAGTTTGAAGATGGCCAGAAGATTGTGGTGCAGGGTCAACCAGGAGATGAGTTCTTCATAATTCTTGAGGTAGACTGT a score=600.0 s hg17.chr7_random 683193 1 + 778964 G s panTro1.chr6_random 353861 1 - 67355074 G s canFam1.chrUn 89264086 1 - 91062872 G s fr1.chrUn 293245985 1 - 349519338 G a score=-125.0 s hg17.chr7_random 683193 1 + 778964 G s danRer1.chrNA 312864514 1 - 390413307 C a score=-4008.0 s hg17.chr7_random 683194 12 + 778964 CTTCCCAC-----------------GTGG------------- s panTro1.chr6_random 353862 12 - 67355074 CTTCCCAC-----------------GTGG------------- s mm5.chr5 12778606 10 - 149219885 --TCCTGT-----------------GTGG------------- s rn3.chr12 16134382 27 + 46649226 --TCCTATAAAGGCTGTTGCTGCCAGTGG------------- s canFam1.chrUn 89264087 12 - 91062872 CTGCCCAA-----------------TCAG------------- s danRer1.chrNA 312864515 25 - 390413307 CAGCTCAC-----------------TCTGCTCTGCTCAGCGT a score=807.0 s hg17.chr7_random 683206 2 + 778964 GC s panTro1.chr6_random 353874 2 - 67355074 GC s mm5.chr5 12778616 2 - 149219885 GC s danRer1.chrNA 312864540 2 - 390413307 GT a score=-415.0 s hg17.chr7_random 683206 7 + 778964 GCGCTCT--- s danRer1.chrNA 312864540 10 - 390413307 GTGTTTATCT a score=1338.0 s hg17.chr7_random 683208 5 + 778964 ---GCTCT s panTro1.chr6_random 353876 5 - 67355074 ---GCTCT s rn3.chr12 16134409 5 + 46649226 ---GCTCT s danRer1.chrNA 312864542 8 - 390413307 GTTTATCT a score=-509.0 s hg17.chr7_random 683213 45 + 778964 GGGTGTGCACTGGGG------CAGGGGCACTT--CTTACCTTCTCCTCTT------CCA s panTro1.chr6_random 353881 45 - 67355074 GGGTGTGCGCTGGGG------CAGGGGCACTT--CCTACCTTCTCCTCTT------CCA s rn3.chr12 16134414 48 + 46649226 GGGCA-GCACCGAGGGGAAGCCAGGGCGGCTT----TGGCTTGTTCTCTG------TTC s canFam1.chrUn 89264099 50 - 91062872 GGGTGTA---GGGGA------CAAGGTGCCCCGCCCTTGCTGCTCCATGTGCATGACCC s danRer1.chrNA 312864550 41 - 390413307 GAGTGTTTTCT----------CAAGGTTTTTC--TTTGTGCTCTCCTCCT------TCA a score=12960.0 s hg17.chr7_random 683258 150 + 778964 CTGCCCGCCTCACCCTCCCTCTGGAGTCAGTGCTGCCCTGTGACCGCACGCCCGTCCGGGGCCTCCATGGGGTGGGTGGT-CTGTGGCCTCACATTCCTGCCACTGAGATTCCTCCTGCCCTCTAGCATCAAAAGCCTCCCTTCTTAGAAA s panTro1.chr6_random 353926 150 - 67355074 CTGCCCGCCTCACCCTCCCTCTGGAGTCAGTGCTGCTCTGTGACCGCACGCCCGTCCGGGGCCTCCATGGGGTGGGTGGT-CTGTGGCCTCACATTCCTGCCACTGAGATTCCTCCTGCCCTCTAGCATCAAAAGCCTCCCTTCTTAGAAA s rn3.chr12 16134462 133 + 46649226 CT-CTTACCTAGCACTTC------AGCCAA---CATCCT----CCACATCATCCCCAAATGTCTATGTGGGAGAGTTGGTGCCATGGCCTCGCACCCCTGCCACTGTGCTGTC-AATGTTGTTGAG-ATCAAAAGTCTTTC--CTTAAAAA s canFam1.chrUn 89264149 99 - 91062872 CAACCCACCACCCTCCCACTCTCCATCCCA------CTAACAGCTGCAGGCCAGT-------------------GCTGAT---GTGTCCTCA------------------------TGCCCTTGAGAATCAGAAAGGTCTCCTCTTAGAAA a score=0.0 s hg17.chr7_random 683408 5 + 778964 GGTAg a score=-169.0 s hg17.chr7_random 683408 5 + 778964 GGTAg s panTro1.chr6_random 354076 3 - 67355074 GGT-- a score=3032.0 s hg17.chr7_random 683413 27 + 778964 gtggct--ggtgcctgagctgcacgtgtg s panTro1.chr6_random 354079 25 - 67355074 --GGCT--GGTGCCTGAGCTGCACGTGTG s canFam1.chrUn 89264248 28 - 91062872 ATGGTTCGGGTCCCCAGGCC-CACGCATG a score=30380.0 s hg17.chr7_random 683440 342 + 778964 ataaaactgcatgaaactggccgggcgcggcggctcacgcctgtcatcccagcactgtgggaggctgaggcgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaatttgccgggtgtggtggcacatgcctgtaatcccagctacttgggaggctgaagcaggagaatcgcttgaacccgggagatggaggttgcagtgagccaagatcacaccattgcactccagcatggacaacagagtgagattccgtctcaaaaaaaaaaaaaaaaagtaaaataaaaaacctgcacaaaac s panTro1.chr6_random 354104 338 - 67355074 ATAAAACTGCATGAAACTggccgggcgcggcagctcacgcctgtaatcccagcactgtgggaggctgaggcgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaatttgccgggtgcggtggcgggcgcctgtaatcccagctacttgggaggctgaagcaggagaatcgcttgaacccgggaggtggaggttgcagtgagccgagatcacaccattgcactccagcatggacaacagagtgagattccgtctcaaaaaaaaaaaaa----gtaaaataaaaaaCCTGCACGAAAC a score=51713.0 s hg17.chr7_random 683782 393 + 778964 ctgcacacagggcgtgcgagggtgggtagagctgaggagggagtggggtgggggatggcaccgcgtccgcatcccggccatggcgtggca-ctgtgtgtacacagcaggtcactgttggggacatcgcatacattcagggtacgcaggatctctctatattatttctaacaaccgcactcaaatgtacgatgatggcaaaattaaaagtttaattttaaaaaGACGGTGGCAGCTTCTCTATCTGGATGTGTGTGTGAGTCATTTTTGCCGTCTCACGCCACGGCCCCACCACAGGCAGGCGACAG----GTGGCTCCGTGGAGCTCCCGGGATGTGCTGGGGCCGCAGTCCGTGGTGGCCGCACGC-AGACTGT---TGGGTGGGCCGAGCAGCTGTCCTG s panTro1.chr6_random 354442 397 - 67355074 CTGCACACAGGGCGTGCGAGGGCGGGTAGAGCTGAGGAGGGAGTGGGGTGGGGGATGGCACCGCGTCTGCATCCCAGCCATGGCGTGGCA-CTGTGTGTACACAGCAGGTCACTGTTGGGGACATCGCATACATTCagggtacgcaggatctctctatattatttctaacaacctcactcaaatgtacgatgatggcaaaattaaaagtttaattttaaaaaGACGGTGGCAGCTTCTCTATCTGGACGTGTGTGTGAGTCATTTTTGCCGTCTCACGCCACGGCCCTACCATGGGCAGGTGACAGACAGGTGGCTCCGTGGAGCTCCCGGGATGTGCTGGGGCCGCAGTCCGTGGTGGCCGCACGC-AGACTGT---TGGGTGGGCCGAGCAGCTGTCCTG s canFam1.chrUn 89264302 326 - 91062872 CTGAACACA---CGTGT-AGGCTCAGTAGA---------------------GGTCTGAACCCACACTGGAaccctgggtgtcacatggcacctatagttttatggcatgtttttgttgggggaaatgcgtaaatttagggcacatgggatctttccacgctgtttcttacaactacgtgcaaatctacaatgatctc-aaattaaaagtttagttttaaaaA-ATGGTTCCAGGTTCTCAGCCTGGAC--ACGCATGAGTCACTTTTA----------------------CGAGGCCTAGCGACAG---------------------CTGGG----GCTGGGGCTGTAATCCGTGGCGGCCACACTCGAGCCTGTCACTGACAGGGCCGAGCAGCTGCTGTG a score=60498.0 s hg17.chr7_random 684175 658 + 778964 AGGACACGGCAGGAATTCGCGTGTGAACTCCCATTCCGGGTGCCGGCGAGGGACTCCGTGCCTGAgagttagcaggtgggactcgactccagaggtggggctgggacactggacctaattgaggactggctaaaacagggccagggtgcaagccactctccgtaagccacgcccacccgtgcaccattgtcagtttaccgttgccatgacaacacccgggcgctcccgcccctttccatggcaatgtggtctgatgacccggaaaattaccacccttaaccagagagctgtgtataacccacccctt-aatgtgcacataatttaaagtgggtataaatgggactgcaaaagcgccctgagctgctaccctcagcgcactgcctagcgggagcggctccgagctgtaacaccaaacactgccacctcagtaaagctgttcattccacctcctgctggcccttgaatcctgtcctgggcaaagtcaagaaccctcgtgggctaagccccactttggggcccacatgCATCACCTGTGCCCCATGGTTGTTTGAACTGTGGCCTGCCCGGCGATCTGAAGCCCCCTCCCTTCGGATTCATGCTGCAGGAACTGGGCCGGAACCCCAGGGCCGGCAGTGCGTCCGTCGTCCGGAGGCTCTGC s panTro1.chr6_random 354839 659 - 67355074 AGGACACCGCAGGAATTCGCGTGTGAACTCCCATTCCGGGTGCCGGCGAGGGACTCCGTGCCTGAgagttagcaggtgggacctgactccagaggtggggctgggacactagacctaattgaggactggctaaaacagggccagggtgcaagccactctctgtaagccacgcccacccgtgcaccagtgtcagtttaccgttgccatgaaaacacccgggcgctcccgcccctttccatggcaatgtggtccgatgacccggaaaattaccacccttaaccagagagctctgtataacccacccctttaatgtgcacataatttgaagtgggtataaatgggactgcaaaagcgccctgagctgctaccctcagcgcactgcctagcaggagcggctccgagctgtaacaccaaacactgccacctcagtaaagctgttcattccacctcctgctggcccttgaatcctgtcctgggcaaagtcaagaaccctcgcgggctaagccccactttggggcccacatgCATCACCTGTGCCCCATGGTTGGTTGAACTGTGGCCTGCCCGGCGATCTGAAGCCCCCTCCCTTCGGATTCATGCTGGAGGAACTGGGCTGGAACCCCAGGGCCGGCAGTGCGTCCGTCGTCCGGAGGCTCTGC a score=31660.0 s hg17.chr7_random 684833 227 + 778964 CTGGGGCCTCCCTGAGAGGAACCCCCTCCCCAGGTGGCCCCGGGCAGGAATGAGTGACCTGTCCAGGCTGTGTGGTGACCTGCCCGGCTCTGCAGAGCTACACGTATGCTCCCGTGTGTCTGACATGTTCCCCATGTCTCCGGCCCTCAAGGGTGAGCAGGATCTCACGCTTGCATGCTCCCT-AAGCACACGCCCCAACTCTGTA-CCTGTCATCGGGAAATGCGTGC s panTro1.chr6_random 355498 227 - 67355074 CTGGGGCCTCCCTGAGAGGAACCCCCTCCCCAGGTGGCCCCGGGCAGGAATGAGTGACCTGTCCAGGCTGTGTGGTGACCTGCCCGGCTCTGCAGAGCCACACGTATGCTCCCGTGTGTCTGACATGTTCCCCACGTCTCCGGCCCTCAAGGGTGAGCAGGATCTCACGCTTGCATGCTCCCT-AAGCACACGCCCCAACTCTGTA-CCTGCCATCGGGAAATGCGTGC s canFam1.chrUn 89264655 220 - 91062872 CTGAGACCCCC---AGAGTGAGCCTCCACCCAGGCGCTGCCCGGAATGAATGGGGGGCCCG-CCGTGCCGTGTGGGCAGC--CCCAATGACGCAGGCCCAGAAGTATGCTGCCGTCTGTTGGGCTCACTTCCTCCTCCTCTGGTGCTCAGGGGCG-GAAGGATTTCACATT--CATGCTCATTAAAGCACATTCTTCAGCTGTGCATTTTGCCACTGGACAAAGGGAGC a score=21682.0 s hg17.chr7_random 685060 235 + 778964 GTCAGGGTGGCGGAGTTTAAGGTCCCGTCCTCGCCGAAACACCCGCAGCTGTGGGCAGTGACGAGGATCATTTT-GGGTCCAGAAGGAGGGCACCTCTCTGCCCTGGGGGCTGCTGGAAAGAAACAGGAGGTCAGCAAAGAGCTCAAGTCCCAGTGGATGTTTGGCAACTTCGGCAAATTCGGGAGCCAGTGTCTTGGTTCGAAACAACAGAAGCCCAGCAATGCGGCTGGGGCCG s panTro1.chr6_random 355725 236 - 67355074 GTCAGGGTGGCGGAGTTTAAGGTCCCGTCCTCGCCGAAATACCCGCAGCTGTGGGCAGTGACGAGGATCATTTCCGGGTCCAGAAGGAGGGCACCTCTCTGCCCTGGGGGCTGCTGGAAAGAAACAGGAGGTCAGCAAAGAGCTCAAGTCCCAGTGGATGTTTGGCAACTTCGGCAAATTCAGGAGCCAGTGTCTTGGTTCAAAACAACAGAAGCCCAGCAATGCGGCTGGGGCCG a score=100.0 s hg17.chr7_random 685294 1 + 778964 G s rn3.chr8 125173739 1 - 129061546 G a score=19205.0 s hg17.chr7_random 685295 190 + 778964 CTGATGGAGTTGGACGGGGCCGCTGATGGCGTTGGACGAGGCCGTTGATGGAGTTGGATGAGGCCGCTGATGGCATTGGGTGAGGTGACTGATGGAGTTGGACGGGGCCGCTGATGGCG----------------------TTGGGTGAGGC--------------------------------------------------------------------------------GAC--------TGATGGAGTTGGATGAGGCCGCTGATGGCGTTGGACGAGGCCGCTGATGGCGTTGGA s panTro1.chr6_random 355961 300 - 67355074 CTGATGGAGTTGGATGGGGCCGCTGATGGCGTTGGACGAGGCCGTTGATGGAGTTGGATGAGGCCGCTGATGGCATTGGGTGGGGTGACTGATGGAGTTGGACGGGGCCGCTGATGGCGTTGGGTGAGGCGACTGATGGAGTTGGATGAGGCCGCTGATGGCGTTGGACGAGGCCATTGATGGAGTTGGACGAGGCTGCTGATGGTGTTGGACGGGGCCGCTGATGGTGATGGACGGGGCCGTTGATGGAGTTGGGCGAGGCCGCTGATGGAGTTGGGCGAGGCCACTGATGGCGTTGGA s mm5.chr2 131157102 189 + 181686250 CTGACACAGTGGGACAGGAGCACTGATGCAGTGGGACAGGAGCACTGATGCAGTGGGACAGGAGCACTGATGCAGTGGGACAGGAGCACTGATGCAGTGGGAAGGGG-CACTGATGCAG----------------------TGGGACAGGAG--------------------------------------------------------------------------------CAC--------TGATGCAGTGGGACAGGAGCACTGATGCAGTGAGACAGGAGCACTGATGCAGTGGGA s rn3.chr8 125173740 190 - 129061546 CTAGTGGAGATGAGGGTGTCGGCTAGTGAAGATGAGGGTGTCGGCTAGTGGAGATGAGGGTGTCGGCTAGTGAAGATGAGGGTGTCGGCTAGTGAAGATGAGGGTGTCGGCTAGTGGAG----------------------ATGAGGGTGTC--------------------------------------------------------------------------------GAC--------TAGTGAAAATGAGGGTGTCGGCTAGTGAAGATGAGGGTGTCGGCTAGTGAAGATGAG a score=329.0 s hg17.chr7_random 685485 2 + 778964 AG s panTro1.chr6_random 356261 2 - 67355074 AG s rn3.chr8 125173930 2 - 129061546 GG a score=41067.0 s hg17.chr7_random 685487 434 + 778964 ATGCTCACCACCGCTGGAACACAGGCCGAAAAGCAGGAGGCTGGAGTAAGAGCCTGCGGGAAGGAAGTGTGTGTTTCGCTGGAGACCCAGGCTCGGGCCCCTGCACCTGCAAATCCTCACTACCCTTCCCTGAGGGGCACATTCAGGGCCTCTCCCGCCCCTCATTCCCGGTGCTTCCCACTGCGGCTCTACCATAAGGAAAGATCTGGAAGGCTGGGGTAGAGCAGGAGAAACAGCAGAGGCCAGAGGGCACCAGGCCGGCTGGGGCATCCGAGATGCCGGGAGATTTCTGCTGACCTGGAAGAAGCACCAAGGCAGGTCTCGACAGGGCAGCCAGCTTCACGGAGCTCCACACGGTGGATTTGGGGTTCCCGGACCTGAGTCACTTCCGTCTCCACGTCCCAGAATGCTCATTGTGtgaatgaattaatgaa s panTro1.chr6_random 356263 434 - 67355074 ATGCTCACCACCGCTGGAACACAGGCCGAAAAGCAGGAGGCTGGAGTAAGAGCCTGCGGGAAGGAAGTGTGTGTTTCGCTGGAGACCCAGGCTCGGGCCCCTGCACCTGCAAATCCTCACTACCCTTCCCTGAGGGGCACATTCAGGGCCTCTCCCGCCCCTCATTCCCGGTGCTTCCCACTGCGGCTCTACCATAAGGAAAGATCTGGAAGGCTGGGGTAGAGCAGGAGAAACAGCAGAGGCCAGAGGGCACCAGGTTGGCTGGGGCATCCGAGATGCCGGGAGATTTCTGCTGACCTGGAAGAAGCACCAAGGCAGGTCTCGACAGGGCAGCCAGCTTCACAGAGCTCCACACGGTGGATTTGGGGTTCTGGGACCTGAGTCACTTCCGTCTCCACGTCCCAGAATGCTCATTGTGtgaatgaattaatgaa a score=25622.0 s hg17.chr7_random 685921 196 + 778964 tgcatgaaggaatgaTGCTTGTCTCCAACCTAAAAGTACAGCAGGCTGCACGGACATTCACGAAGGGGGTCCTTGCG-GGGGAGCCGTTATCA--GGCAGTATTTCCGGTCGGTAGAGTAGAGGACTCGTTCAACAGTGATGCTTCTTTAAAAGGAG--AGAAGGAGGAGGGAAAG--GATGAAACCACAGGCAGCCCAAGTG s panTro1.chr6_random 356697 196 - 67355074 tgcatgaaggaatgaTGCTTGTCTCCAACCTAAAAGTACAGCAGGCTGCACGGACATTCACGAAGGGGGTCCTTGCG-GGGGAGCCGTTCTCA--GGCAGTATTTCCGCTCGGTAGAGTAGAGGACTCGTTCAACAGTGATGCTTCTTTAAAAGCAG--AGAAGGAGGAGGGAAAG--GATGAAACCACAGGCAGCCGAAGTG s canFam1.chrUn 89265380 201 - 91062872 TGCATGAGCAAAAGAGGC-TGCCTCCAACCTGAGCTCCCTGAAAGCTGCATAAATATTTCTGAAGGAGTTCCCAGCACAGGGAGGTGGTCTTGGTGGCATAGCTTGAGGTCCTGAGGGCAG-GAGCCCACTCAATGCTAACATTTCCTTGAAAAGAGGAAAAAAAAGGAAGGACGGACAAATAAACCCCAGGCTGGACAAGTG a score=6171.0 s hg17.chr7_random 686117 65 + 778964 ATTATTCTGGCCAGCGTTGAAGGAGGCTCTGGCGGGCCCCGAGAGGGGAGTGACCCCAGCCGTGA s panTro1.chr6_random 356893 65 - 67355074 ATTATTCTGGCCAGCGCTGAAGGAGGCTCTGGCGGGCCCCGAGAGGGGAGTGACCCCAGCCGTGA a score=1632.0 s hg17.chr7_random 686182 10 + 778964 TTCCAGCGTG s panTro1.chr6_random 356958 10 - 67355074 TTCCAGAGTG s mm5.chr10 54018324 10 - 130633972 TTCCAGGGAA a score=21887.0 s hg17.chr7_random 686192 256 + 778964 CACACCCGCCCGTGTGCAGAGGAGAGGATGCCAGCGTGCACGCCTGCCCATGTGCAGAGGAGAGGATGCCAGCGTGCACGCCCGCCCGTCTGCAGAGGAGAGGATGCCAGCGTGCACGCCCGCCCGTGTGCAGAGGAGACTATGCCAGCGTGCACGCCCACCTGTGTGCAGAGGAGAGGATGCCTGTGTGCACATTTGCCCGTGTGCAGAGGAGAGGATGCCAGCATGCACACCCACCCATGTGCAGAG--------CAGAGGA s panTro1.chr6_random 356968 256 - 67355074 CGCACCCACCCGTGTGCAGAGGAGAGGATGCCAGCGTGCAAGCCCGCCCGTGTGCAGAGGAGAGGATGCCAGCGTGCACGCCCGCCCGTGAGCAGAGGAGAGGATGCCAGCGTGCATGCCCGCCAGTGAGCAGAGGAGAGGATGCCAGCATACACGCCTGCCCATGTGCAGAGGAGAGGATGCCAGTGTGCACGCACGCCCGTGAGCAGAGGAGAGGATGCCAGCGTACACGCCTGCCCGTGTGCAGAG--------GAGAGGA s mm5.chr10 54018334 226 - 130633972 CACGCCCACCCAACCTCAGAGACTACTGCCTCAGGAAACACGCCCACCCAACCTCAGAGACTACTGCCTCGGGAAACACGCCCACCCAACCTCAGAGACTACTGCCTCAGGAAACACGCCCACCCAACCTCAGAGACTACTGCCTCAGGGAACACGCCCACCCA-----------------ACCT---------------------CAGAGACTACTGCCTCAGGAAACACGCCCACCCAACCTCAGAGACTACTGCCTCAGGA s rn3.chr8 61321998 256 - 129061546 CACACATGCCAGTGGGCAGGACAGGGGTCATCTCAGGTCACATATGCCAGTGGGCAGGACAGGGGTCATCTCAGGTCACACATGCCAGTGGGCAGGACAGGGGTCATCTCAGGTCACACATGCCAGTGGGCAGGACAGGGGTCATCTCAGGTCACACATGCCAGTGGGCAGGACAGGGGTCATCTCAGGTCACATATGCCAGTGGGCAGGACAGGGGTCATTTCAGGTCACACATGCCAGTGGGCAGGA--------CAAGGGT a score=724.0 s hg17.chr7_random 686448 7 + 778964 --TGCCAGC s panTro1.chr6_random 357415 7 - 67355074 --TGCCAGC s mm5.chr10 54018560 7 - 130633972 --TGTCAGC s rn3.chr8 61322254 7 - 129061546 CATCTCA-- a score=10229.0 s hg17.chr7_random 686455 67 + 778964 GTGCACATTTGCCCATGAGCAGAGGAGAGG--ATGCCAGCGTCATGTTCGCCCGTGAGCAGAGGAGAGG s panTro1.chr6_random 357422 67 - 67355074 GTGCACATTTGCCCATGAGCAGAGGAGAGG--ATGCCAGCGTCATGTTCGCCCGTGAGCAGAGGAGAGG s rn3.chr8 61322261 68 - 129061546 GGTCACATATGCCAGTGGGCAGGACAGGGGTCATCTCAG-GTCACATATGCCAGTGGGCAGGACAGGGG a score=52527.0 s hg17.chr7_random 686522 569 + 778964 ATTGCAAACCGACAGCTGAAATCTGGTGTATTAAAGGCGGCTGTTgggcacggtggctcatgctgtaatcccagcactttgggaggccaaggtaggaagaggatcactcgagcccaggcattcaagaccagcctgggcaacatagtgagaccccatctctactaaaaatttaaaaattatcagcaccataagacaggtgaaaaaattagctgggtgtggtggtgcacgcctgtagtcccagctacttgggaggcggaggcgggaggatcgcttgagctcaggagttcaaggctacagtgagctatgattgcgccattgcactccagcctgggcaacagagagagaccctgtctcaaaaccaaaaccaaaaccaaaaacaaaaaaAGatggcttcaaattcttggctgtctttcctgtggaaaaggggagtctaaccccctccccttgatgctgggctggcttaggtacacacttgacagacagaatgcagtggaatgatgtcgtaggttacccaagactgggtgctccaaagccttacagcttccaccacagcctctgggagccctgct s panTro1.chr6_random 357489 569 - 67355074 ATTGCAAACCCACAGCTGAAATCTTGTGTATTAAAGGCAGCTGTTgggcatggtggctcacgctgtaatcccagcactttgggaggccaaggtaggaagaggatcactcgagcccaggcattcaagaccagcctgggcaacatagtgagacgccatctctactaaaaatttaaaaattatcagcaccataagacaggtgaaaaaattagctgggtgtggtggtgcacgcctgtagtcccagctacttgggaggcggaggcgggaggatcgcttgaggtcaggagttcaaggctacagtgagctatgattgcgccattgcactccagcctgggcaacagagagagaccctgtctcaaaacaaaaaccaaaaccaaaaacaaaaaaGgatggcttcaaattcttggctgtctttcctgtggaaaaggggagtctaaccccctccccttgatgctgggctggcttaggtacacacttgacggacagaatgcagtggaatgatgtcgtaggttacccaagactgggtgctccaaagccttacagcttccaccacagcctctgggaaccctgct a score=75375.0 s hg17.chr7_random 687091 590 + 778964 cccgggatgctc-ttcttggggc--------------ccagcagctgtgctctgagacgcatacccagccagcgcagccccagcctcagccagcacagcc---------------------gtgaatgcccagtgtcaacagctgccatatgactgtgccatcttggacgtcccgccagctgggtcttccgatgaggtcacccctgcctccatctggatgcaaccccaggggagaccccgagtgagaaccgcccggctgagcccctccaacccccgaac----tgtgaagggtaacaacaaattgtggt----ttaagtcgctgacttcaggaatggcttCTCAGTTATCACCAGTTCTCGCTACTGAAATTAGTACGTCAGTAGAGCCCTTCCTTGCCTAGACAACAGAGCAATGGCGGTGGCTCTCCCGGCCGCTCCACCGCCAGCAGGACGACTGCGGTGACAGGTGGAAAGGCAGATATCTTTAGTTGCTCTAGGTTTTACAACCATTGACAAGaaactggtgcttacaggctcaatctggcccagagacaaatttgtgttggcctgtgcagtgtttttttaaacatttggattacttgttgatattttatagtcaggagatttcacata s panTro1.chr6_random 358058 611 - 67355074 cccaggatgctc-ttcttggggc--------------ccagcagctgtgctctgagacgcacacccagccagcacagccccagcctcagccagcacagccccagcctcagccagcacagccgtgaatgcccagtgtcaacagctgccatatgactgtgccatcttggacgtcccgccagctgggtcttccgatgaggtcacccccacctccatctggatgcaaccccaggggagaccccgagtgagaaccgcccggctgagcccctccaacccccgaac----tgtgaagggtaacaacaaattgtggt----ttaagtcgctgacttcaggaatggcttCTCAGTTCTCACCGGTTATCGCTACTGAAATTAGTACATAAGTAGAGCCCTTCCTTGCCTAGACAACAGAGCAATGGCGGTGGCTCTCCCGGCCGCTCCACCGCCAGCAGGACGACTACGGTGACAGGTGGAAAGGCAGATATCTTTAGTTGCTCTAGGTTTTACAACAATTGACAAGaaactggtgcttacaggctgaatctggcccagatacaaatttgtgttggcctgtgcagtgtttttttaaacatttggattacttgttgatattttacagtcaggagatttcacata s canFam1.chrUn 89266319 550 - 91062872 CTCCAGATGCTCATCCTTGGGGCCCTCCTTCCTGGCACCAGTGGCTGTGCTCTGAGATGCCCACATGGCTCA------------CCTGATCAGTGGGGCC---------------------ATGAGATCTGAGTT----CAGAAGCCACTTGA-TGCCCCGCCTTGGATGTCCAGCCCACTG------TCCACATTGCAGCCCCAGCTGCCACCCACCTGCA---TCAGCAGAGACCCCAAGTGAGAG-CACCCAGCCAGACCCAGCCAGGCCCCAAGCCCCATGAGAGGGG-----ACAGGCAGTGGCTCTATCTAATACCTGAGCCCTGGGACTGCCTACCCATCCTCCTCAGTTGTCACCAT---GAGTGATGCCTGCGTGGAGGCCCTCCTC---------------------CGGCAGCTCTGATGACTGTG-----GACCAAGGGAAGGGTGTGATGCCAACT-TAAAAGCACAGATCTTTTCCTGCTCTAGGTTTTA-ATTCATTAATAAGAAGCTGGTGCTCATAgggccagtttggcccagagatgtgtttctattagcctgtatggtattttttttaacatatgaattagttgtcaatatttgaaaatcaagatatttcccata a score=28216.0 s hg17.chr7_random 687681 311 + 778964 aaaatctgggtcgctggccaggcgtggtggctcacgcctataatcccagcactttgggaggctgaggcagatggatcacttgaggtcaggacttcaagatcagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccgggtgtggtagcaggtgcctgtaatcccggctactgggaggctgaggcataagaatcacttgaacc-caggaggcagagattgcagtgagctgagatcacgccattgtactccagcctgggccacagagcaagagcctgtctcaaaaaaaaaaaaa------aa s panTro1.chr6_random 358669 318 - 67355074 aaaatctgggtcaccggccaggcgtggtggctcacgcctgtaatcccaacactttgggaggctgaggcagatggatcacttgaggtcaggacttcaagatcagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccgggtgtggtagcaggtgcctgtaatcccggctactgggaggctgaggcataagaatcacttgaacctcaggaggcagagattgcagtgagctgagatcacgccattgtactccagcctgggccacagagcaagagcctgtctcaaaaaaaaaaaaataaataaa a score=69322.0 s hg17.chr7_random 687992 563 + 778964 tctggatctgttaattctctttaaaaatctgacatccggccacactggacctgcagccctgtctggccctacccagctggagctgagaggcagatgccccttctggTGTGAAAGGCTTCCCAGCTTTCTCAGCCCC-TGCCCTGCCCTGCTCTCGG--CTTCTCAGCCGTCTCTGCAGGCACTCGGGGGCTTCTGAGTTGGCAGCCTCGGCTTTAATGGTCTTGAAACTGAGAGAATGGGTAGCTGTGGCTGATTCAGACAATCACCCATTATTCACTGCAGAGCAAGGCCCC-TCCCAGCTGAGCCCAAGGACCCGTGTAGGAAAATCATGAAAATGTGTGTGGGGGGCGTGGATCGTGGGTGCGTCTTCACAG------AGAGCAGATCAAGGCCGCACGCGCGGTGTTCTCACCCCTGAACAGAGGAGATGGCATCACCGAGTCGCGCGGCGTGTTCTGAGTGTTGAGTATGT-GCCGGGCGTCCTGGGAGCCCCCCACGCACACCGCGT--GTGACCCA-ACCGCACCCCGGCGGGG---GGATTCTGCCAGCCACGCCCTCCACATCCACGCCGG s panTro1.chr6_random 358987 564 - 67355074 tctggatctgttaattctctttaaaaatctgacatccggccacactggacctgcagccccgtctggccctacccagctggagctgagaggcagatgccccttctggtgtgaaaggcttcccagctttctcagcccc-tgcccggcccTGCTCTGGG--CTTCTCAGCCATCTCTGCAGGCACTCGGGGGCTTCTGAGTTGGCAGCCTCGGCTTTAATGGTCTTGAAACTGAGAGAATGGGTAGCTGTGGCTGATTCAGACAATCACCCATTATTCTCTGCAGAGCAAGGCCCCCTCCCAGCTGAGCCCAAGGCCCCGTGTAGGAAAATCATGAAAATGTGTGTAGGGGGCGTGGATCGTGGGTGCGTCTTCACAG------AGAGCAGATCAAGGCTGCACGCGCGGTGTTCTCACCCCAGAACAGAGGAGATGGCATCACCCAGTCGCGCGGCGTGTTCTGAGTGTTGAGTATGT-GCCGGGCGTCCTGGGAGCCCCCCACGCACACCGCGT--GTGACCCA-ACCGCACCCCGGCGGGG---GGATTCTGCCAGACACGCCCTCCACATCCACGCCGG s canFam1.chrUn 89266873 518 - 91062872 tctggatttcttccttccctttaaaactctggtgtctgaccaccttggacctgca-tcctacctagccagaaccagc-agacctgagAGGTGG-----------------------------GCTCTCTAAGCCCCAGGCCCCACCCGGCCGTAGAGCCCACTTAGTGGACCCTGCA----------GCCTTCAAGGTTCGCAGCCTCAGAGCTTGTGGTCTCCAAGCTGAGGGC----GTAACTCCAGCCAGCCCAGACAACTGTCCATTATTTGCTGTGGACCGAGGCTGCCTCCCAGCCG-GTCTAAGGCCATGGGTAGAAAAAGC-CAAGAATGTGTGCAAGAGGCACAGATAGGTGAGGAGTCCTCACAGGACACCAGGGAAAGGAGTGGTTGGTTACCTACTGTGCT-AATCCTGATAATGCAGGCTGGTGCTTCCCGA--GCCCAGGATGTGCCAGGTGTTGTGTGAGTGGCCAGGC---------ACCCCCAAGGGGGGTCGGGTCAGTGGTCAGCATCCCTTCCTGGTGGGGGGTGGGTCCTGCACCCCAAGCC--ACACAGCCA-GCCAG a score=28808.0 s hg17.chr7_random 688555 308 + 778964 GGTCATCGGCTGAGGACAGGTGTGGGGACCGGCGAGGGGCAGACGCTGCCTCCCGCAGCTGGGAGGCTCTGCCAGCTGTGCCTCCACCATGGGTGTGCCCGACTCCGCGATCCCAGTCTTGCGAGCACAACTTCCAGTGTTTTCCGCTTTCTGACCCTCTGTCCACTCCCTGGTTGACGACTCGGATTTTACCTTCTTGGGTGTTTTGCGGGCTGTGGGAGCCAGGCCCCGCAGTGGCACATCTGCTGAAGGCCGTTACGGCTGATTTTCGTGATCTTGGGGGGCTCACCCGGCTCTCCGGCAGTGTG s panTro1.chr6_random 359551 308 - 67355074 GGTCATCGGCCGAGGACAGGTGCGGGGACCGGCGAGGGGCAGACGCTGCCTCCCGCAGCTGGGAGGCTCTGCCAGCTGTGCCTCCACCATGGGTGTGCCCGACTCCGCGATCCCAGTCTTGCGAGCACAACTTCCGGTGTTTTCCGCTTTCTGACCCTCTGTCCACTCCCTGGCTGACGACTCGGATTTTACCTTCTTGGGTGTTTTGCGGGCTGTGGGAGCCAGGTCCCGCGGTGGCACATCTGCTGAAGGCCGTTACGGCTGATTTTCGTGATCTTGGGGGGCTCACCCGGCTCTGCGGCAGTGTG a score=18527.0 s hg17.chr7_random 688863 193 + 778964 GTTTTGTGTTGGGAACAGCTGCTTCCCGGAGGTTCTACAGGCTCTCTGCAGAGTCCCCAGGAGGGGTGCTGGGGTCAGATGCTGG-CTGCCCCTCCGCAGGAGCCCCCACGCGCTCCTGCACAGGCTTCCCGGAAAGGCT--CTGAGGAGGGGCATGTGGGGA-GGGGCCTGCTG-GTGTCTGTGGGGAGAGCAGAGC s panTro1.chr6_random 359859 193 - 67355074 GTTTTGTGTTGGGAACAGCTGCTTCCCGGAGGTTCTACAGGCTCCCTGCGGAGTCCCCAGGAGGGGTGCTGGGGTCAGATGCTGG-CTGCCCCTCCTCAGGAGCCCCCACGCGCTCCTGCACAGGCTTCCCGGAAAGGCT--CTGAGGAGGGGCATGTGGGGA-GGGGCCTGCTG-GTGTCTGTGGGGAGAGCAGAGC s canFam1.chrUn 89267606 168 - 91062872 GCCTTGTGTTGTG-ATGGCT-----CTGGGGGCATTGC-----TTCTGCTCATCCCTTGGTA--GCTGTTGGTGTCCGTTCTTGGACAGCTCC-------GAGGACACAGG-------GGGCAGG---CCAGGAGAGGGTGCCAGGGGAGAGTGATGGGGTGACAGTGACTGCTACGGCTCTGTCCGGGGACTAGGAC a score=0.0 s hg17.chr7_random 689056 1 + 778964 G a score=300.0 s hg17.chr7_random 689056 1 + 778964 G s panTro1.chr6_random 360052 1 - 67355074 G s mm5.chr5 12780530 1 - 149219885 G a score=5080.0 s hg17.chr7_random 689057 39 + 778964 CTGCGCAGGGT-GCCCTGACCACTGACAGAGTGTGTGGGG s panTro1.chr6_random 360053 39 - 67355074 CTGTGCAGGGT-GCCCTGACCACTGACAGTGTGTGTGGGG s mm5.chr5 12780531 40 - 149219885 CTTCCCAGGGTGGCCTTGGCATCAGTCAGCTTGAGCCTTC s canFam1.chrUn 89267774 36 - 91062872 CTTTGCAGGAT-GGTCTTCCTGCTGACGG---GTGTGAGA a score=0.0 s hg17.chr7_random 689096 59 + 778964 GTCGGGAGGGGAGGTGAGGGGGGCTGTGCAGATTCACATAAAACAGCGCCTTGCACGTC a score=982.0 s hg17.chr7_random 689096 9 + 778964 GTCGGGAGG s panTro1.chr6_random 360092 9 - 67355074 GTCGGGAGG s mm5.chr5 12780571 9 - 149219885 ATTGACTGG a score=9456.0 s hg17.chr7_random 689105 50 + 778964 --GGAGGTGAGGGGGGCTGTGCAG-ATTCACATAAAACAGCGCCTTGCAC-GTC s panTro1.chr6_random 360101 50 - 67355074 --GGAGGTGAGGGGGACTGTGCAG-ATTCACATAAAACAGCGCCTTGCAT-GGC s mm5.chr5 12780580 52 - 149219885 --AGATGAGGGAGAGGTTGGGCCTCATTCACATGAACAGTTATATTGTCTGGGC s rn3.chr12 16142937 53 + 46649226 GGAGATGAGGGAGAGGTTGGGCCTCATTCACATGAA-CAGCATATTGTCTGGGC a score=77214.0 s hg17.chr7_random 689155 258 + 778964 CTCCGGGACGAAACTCAA---CCCGA-GGGAAGGTATCGCTTTCATAGCGCTGTAAAATGTATTTGAAAGGGTCTCCTTGGCAACCTGGATCTTTTT-------------CACTTTTCCTCTGTGATCAGCCAAATTTGGTAAGT--CA-GTGT---GACCCCGGGG--TGCAGGGATCAGAG------GCTCGGAACCGACGCGCTTCGCAGCTTATTGCGGTTTCCAGCTGTGGACCGCACGTCCAGGGCG-GCCACCGACAGCATC--AGACAGGTGCG----------------GCGGGGCCCG s panTro1.chr6_random 360151 260 - 67355074 CTCCGGGACGAAACTCAA---CCCCA-GGGAAGGTATCACTTTCATAGCGCTGTAAAATGTATTTGAAAGGGTCTCCTTGGCAACCTGGATCTTTTT-------------CACTTTTCCTCTGTGATCAGCCAAATTTGGTAAGTCACA-GTGC---GACCCCGGGG--TGCAGGGATCAGAG------GCTCGGAACCGACGCGCTTCGGAGCCTTTTGCGGTTTCCAGCTGTGGACCGCGCGTCCAGGGCG-GCCACCGACAGCATC--AGACAGGTGCG----------------GCGGGGCCCG s mm5.chr5 12780632 261 - 149219885 CTCTGGGATGTAACCCAA---CCCCAGGGGAAGGTATACTTTTCACAACCTTATAAAGTGTGTTTGAAGTGGTCTCCTTGGCAACGTGGCTTTTTTTTTTTTTTAAATACCCTTCTTCCTCTGTGATGAACTGAATCTGGAAAGT--TA-ACCCACAGACCCCAAGT-CCACGGGGACCAGAATGCATTGCTGGGGACTG--------TGCAGCTTATT-------------------CACACGGCTTGGGGGAGGCTCCGGCCACATCTAAGGCAGATGTG-------------CATGGAGGGTCAA s rn3.chr12 16142990 257 + 46649226 CTCTGGGATGTAACCCAA---CCCCAGGGGAAGGTATAGTTTTCAGAACCTTATAAAATGTGTTTGAAGTGGTCTCCTTGGCAACGTGGCTTTTTTT---CCCCTAATACCCTTCTTCCTCTGTGATCAGCTGAATCTGGAAAGT--AA-ACCCACAGACCCCAAGT-CCACAGGGACCAGAAAGCACCACAGGGGACCG--------TGCAGCTTATT-------------------CACATGGCTTGGGAA-GGCTTTGGCCACATCTAAGCCAGATGTA-------------CATGGAGGGTCAA s canFam1.chrUn 89267810 219 - 91062872 CTCTGGAATGTAACCCGATGCTCCCA----------------------------GAAACTTATTTGAAGTGGTCTCCTTGGCAAC-TGGAGTTTTTC-------------CCCTTTTTCTCTGTGATCAACCAAGTTGGGTAGGT--CACGCGG---GACCCCAGGGTTTACAGGCATCAGAG------GCT----------------CTCTGTTGTTT-----------------GCTGCACGGCCAGAAGG-CACACCTGCCACACG--GGTCAGGCCCGCCAGCACTGTGCCCCCGTGGTGTCCA a score=-2388.0 s hg17.chr7_random 689413 80 + 778964 -------GCCGGTGGGGCGGCTTCTCG----------GCAGGCG---------CTGGAGGCTCAGTGGCTGCCCTCGTGGC----CGCCGTTTGTTTTTCTTGAA-----GCAGC s mm5.chr5 12780893 77 - 149219885 -------GCC-------CAGCTCCCTG---------------CG---------GCTATGTCTGAGCTCCTCTTCTTGAGGCGTGAAGTCTCCTGTTTCTCTCACACCTGGGCTGC s rn3.chr12 16143252 96 + 46649226 -------GCT------------CCCTGTGGGATATGGGCAGGCGCTCTCAGCTGCTATGTCTGAGCTCCTCTCCTTGAAACGTGAAGTCTCCTGTTTCCCTCACACCTGGGCTGC s canFam1.chrUn 89268029 79 - 91062872 GCAAGCTGCC----TGGTGGCACCACA----------GGTGGGG---------CTGGAGGC----CGCCTTCCCTTGGGGG----TGTTGCCTCTGGCTCAGGAG-----GCTGC a score=14828.0 s hg17.chr7_random 689493 339 + 778964 GCGTGGAGGAGATGC----CGGTCCCTCGCTCTCCCTGGGGCCGGCGTCCTGCCCTGTCTGCTCACTG---------TCATTCTTCCTCCAGCAGTTTCTAAAGC--------------------ACATTGTTTTGTAAATCACGGCCTTGGTGGGTCG-----CAGA-------TGCCCTGTGC-ATGAGGCC----TCATCCCTGTAGGGCC-----ACGGAGCTCCCGCCTCACCTTTCTCTCCTCCCGCCTACCCTCCACCTGGGGCC------------------------TCCTGCTCCCCTCGGCTCTCCAGGGTGGACGCCAGTGAGGGCTGGCCCAGTCTGCAATGGCAGCCTGC-T-GTGCCTTGCTCCCACTCCGCCCG-AAGATGTGATTGTTTTGGGAGCTGATTTCC s mm5.chr5 12780970 349 - 149219885 CCCTGC--------C----CTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCTGTCT---CACAG---------CCACATCTCTTGTGGTAGTTATCACACCGTCCTAGTGTGGATTTTCTGAACTTGTTTTGTAAACTGTGTCCTTGAGAGCTAGACTAACAGGCACACCCTGCCCTGCTCGAGGAGGACACTGGCAGTCCTGGGAAGCCTAGCTATGAAGC-----CCACATCTCTGTCCCCTGTTCCCTGCCCCCCTCCCCATGTC-------------------------CCTGAGCCCCAATGCTCT-----------------GAGAGCTATAGGATGTCATACTGGCTGCCTGTGT-GTGCCTGGCTCCTGCTACGCCAACAAGATGTGATTGTTTCTGGACCTGATTTCC s rn3.chr12 16143348 339 + 46649226 CCTTGT--------CCCTTCGGGTCCCCCCCCCCCCCCCCCCCGTCTCACAGCCATGTCT---CATCGGTAGTTATCACATTTTTCCTAGTGTGG----------------------ATTTTCTGAACTTGTTTTGTAAACTGCGTCCTTGTCAGCTTG------AGG-------AG--------------GACACTGGCGGTCCTGGGAAAGCTATCTACAAAGC-----CCACATCTTTATTCCCTGTCCCCCATGCCCCACCCCCAGCTGCCAATGGGAGGGTATCTACCTGTCCCAGAGCCCCAGTGCTCT-----------------GAGAGCTACGGGATGTCATGCCGGCTGCTTGTGTAGTGCCTGGCTCCCACTACACCAACAAGATGTGATTGTTTCTGGAACTGATTTCC a score=100.0 s hg17.chr7_random 689831 1 + 778964 C s canFam1.chrUn 89269127 1 - 91062872 C a score=-8406.0 s hg17.chr7_random 689832 501 + 778964 CT--CAGGTGTGGGGACCCCAGCCCCGCACAGGTGTGGAAAACAGCCCCTGCTCACA-CCTGTGAGGCATGAATACCTGC-AGGCCTCGGGGGCAACTCCACTGCAGAGCTGAGCTGGGCGCCATGGAGGCAGCTGGGAAGGCAGGGCCAGGCTGCAGGAACCCCAACTCCCGAGACCCCCGCGGGTCTCTCTGCAGGAGCAGGCCCCTCCTGGGT---GGAGGCTGCTTTTCCTTGTCCCCAACCCCACGGGGTCACGCCCGCTGTCTCTGAAGCTG--TGGGGAGCTGCCAGCCCCTCAGACACCCGATCCCCACAGCTGTTGGAAAATATTCTCAGCAGACTGG-----AGC-GGTCACTCCTCC-----GCAGGCCTGTGGGTTGTGAACCTTGGGAGCTGCAGACATGGAGATGGAGAGCTATGGTACCCACCGCACCCTGTGCGTCAGCGGGAGCCCTGAGCCCCAGGGCCTGGGCGTCCTGCGTCCTTGTGAGGCCTGCACCTGCCGTCAG---CCT s mm5.chr5 12781319 415 - 149219885 ACACCACTTATGGGGACATC---------------------------------------CAGAAGGGGATTAATACCATT-GGCTCCTGGGAGCCTCGCTACCACA-AGGAGAACAGGCCG-----------ATTAAGGAGTTGGAGCCAGCTTATGTG------------------CTTCGTAGAGGCATCTGCAGG-GCTGCACCCTCCGAGGCCAAGTAGCTTGTTTCTCTTTGCT-----------GTATTCACAGTGGCTACCCCTGA-GCAGGATGGGAAGCTGCCAACTTCTCAGACACCTGATCCTCAGAGCTTCTAGAAAACA--CTCAGCAGGCAGGGCAGGAGCTGGGCGTGCCTCCTGCAGACACACCCACCGGTGG-GAGCC--AGGCGCCTAGGACACAAAGGTGGA----------AGTCACAAATCCGGGTG-GT--GCAGGGTCCCTG----CTACTGTCTGAGCTCACTCCCTACT-GTGTCACCTTC--CTGCC-TCTGTTCCCC s canFam1.chrUn 89269128 327 - 91062872 --CCCGGGTGTGG---CTCC-----TGCACAGGTGTGGGGAGTGGCTCCCGCAGACATTTAGTGAGTCATGAACACCTGCTGGCTGGCGGGAGCC------------------------CA-----------GCCTAGAAGGCTGAGCAGAGCTGCAGA------------------ATCCCTGGGCTCA---------GCTGAGCCCTTCCTGGG---GGAGGCGGTGCCCCTGTCTC-CCAGCTCTGCAA----ACACCGGCTGTGTCTGA--------------------ACCCCCTTGACACTGAATCCCCAGAGCTCTTGAAAAACATTCTCAGCGGATGAG-----AGA-------TCCTTA-----CCATGT-----------AAGCC---TGGGCGACAGATACGGAGAAAGT----------ACTCG-----------G-GT-------------------------------------CTTCCC---AGGGCCTGAACCTGCC-CCAG---CCT a score=0.0 s hg17.chr7_random 690333 77 + 778964 CGGGGTGAGGGGAGCTGGATATTTCTAGGGGCTCTTACCAAAGGTTGGGGGGCAGCCCCAGGCCCCAGGAGCTCTAA a score=-939.0 s hg17.chr7_random 690333 52 + 778964 CGGGGTGAGGGGAGCTGGATATTTCTAGGGGCTCTTACCAAAGGTTGGGGGG s mm5.chr5 12781734 9 - 149219885 TGGGGTGAG------------------------------------------- a score=3216.0 s hg17.chr7_random 690350 35 + 778964 GATATTTCTAGGGGCTCTTACCAAAGGTTGGGGGG s panTro1.chr6_random 361390 35 - 67355074 GATATTTCTAGGGGCTCTTACCAAAGGTTGGGGGA a score=3289.0 s hg17.chr7_random 690385 25 + 778964 CAGCCCCAGGCCCCAGGAGCTC-TAA s panTro1.chr6_random 361425 25 - 67355074 CAGCCCCAGGCCTCAGGAGCTC-TAA s mm5.chr5 12781743 24 - 149219885 CTACCCTGGGC--CAGGAGCCCTTGA a score=6805.0 s hg17.chr7_random 690410 118 + 778964 ATGGGGACAGAGTCCTCGGTCCTGTGGCAATGGGAGCAGAAGTGTCATCTCTGTGCCCTGCCTCCGGC-GGACAC----CCGGCTCGCTCCCCAGTGAGAGTGGCGTCCAGGGCCTAGCGGAG s panTro1.chr6_random 361450 118 - 67355074 ATGGGGACAGAGTCCTCGGTCCTGTGGCAATGGGAGCAGAAGTGTCATCTCTGTGCCCTGCCTCCGGC-GGACAC----CCGGCTCGCTCCCCAGTGAGAGCGGCATCCAGGGCCTAGCGGAG s mm5.chr5 12781767 89 - 149219885 GATAGGACAAAGCCTCTG-----------CTGGG---------------TCTGGGCCCTGTGTTTGGCAGGACACAGCTTTGGCTGGCCTCCTAGTAGGG--GGTACCCTGGGCCTG------ s canFam1.chrUn 89269455 56 - 91062872 -----------------------------ATGGG----------------GTGGGACCCACTGTGGGC-AGGC--------------CTCCCCAGGGAGAG-GGTGTTGGGG------TGGAG a score=15460.0 s hg17.chr7_random 690528 186 + 778964 AGGCGGCAGTGTG--TGCCAGGGCTGTGCGGGCT----CCCGGAGGCGGGGACGGTC-CAGCTG----------TTCCGTCACCTCACCGCGGACGGGAAAGTGGAGCGGCATTCGGCCGGGGC-TGGGTGGG----GCGGTGCCCGCCCGGGCACCATCTCAGG-TTCCCTGCGCACATTCCTCCATCTGG---GGCCGCAC-GCCTGCTTT s panTro1.chr6_random 361568 160 - 67355074 AGGTGGCAGTGTG--TGCCAGGGCTGTGCGGGCT----CCCGGAGGCGGGGACCATC-CAGCTG----------TTCCGTCACCTCACCGCGGACGGGAAAGTGGAGCGGCATTCGGCCGGG-------------------------------CACCATCTCAGG-TTCCCTGCGCGCATTCCTCCATCTGG---GGCCGCAC-GCCTGCTTT s mm5.chr5 12781856 174 - 149219885 ----GGCTGGGCC--TGCCAGGA---------------CCTGCAGGCAAGGATGACCTCATCTGGATCCAAGGTCTCCCACAGCTCTCCA-----GGAAAACCCAAGAGGAGCTGGACAGGAGC-TGGGTGGGAAAAGTGATTTCT-------CAGCAGCTCGGA-TTCCAGACCCGCATTCCTCAATTCAAGCTGCCCCCAC-CCCCAC--- s rn3.chr12 16144701 196 + 46649226 AGGGGGTACCCTG--GGCCTGGGCTGAGCCTGCCAGGACCTGCAGGCAAGGGTGACCTCATCTGGATCCAAGGTCTTCCACAGCTCTCCA-----GGAAAACCCAAGAGGAGCCGGACAGGGGC-TGGGTGGGAGAAGTGATTTCT-------CAGCAGCTCGGGATTCCAGACCCGCATTCCTCAATTCGAGC-TGCCCCAC-CCCCAACCC s canFam1.chrUn 89269511 134 - 91062872 AGAGGACAGAGTAGCTGCCCAG-CTGTTCTGGAG----CCT---GGTCAGGATCTAC-CTCCTG----------GTTC--CTGCTCTCCA-----GGAAAA------------CAGACAAGGACGTGGGTGGG-------------------------TCTCGGC-------------ACTCTGCCATGTGG---TCCCACTCTGCCTGCCTG a score=0.0 s hg17.chr7_random 690714 24 + 778964 TCCAGGCCCCTGGAGTTCCCCTCC a score=-137.0 s hg17.chr7_random 690714 1 + 778964 T s panTro1.chr6_random 361728 1 - 67355074 T s rn3.chr12 16144897 1 + 46649226 G a score=6459.0 s hg17.chr7_random 690715 23 + 778964 CCAGGCCCCTGGAGTTCCCCTCC s panTro1.chr6_random 361729 23 - 67355074 CCAGGCCCCTGGAGTTCCCCTCC s mm5.chr5 136399712 23 + 149219885 CCGGGCTCCCGGAGCGCCCCTCC s rn3.chr12 16144898 17 + 46649226 ------CCCCGCTGTCCCATTCC a score=1528.0 s hg17.chr7_random 690738 43 + 778964 CGGAGACCTCCCCACAGC----------CTGGGG--GCAGCTGGACCCCGGGAGC s panTro1.chr6_random 361752 43 - 67355074 CGGAGACCTCCCCACAGC----------CTGGGG--GCAGCTGGACCCCGGGAGC s mm5.chr5 136399735 43 + 149219885 CTCGAGCTTGCCCACCCT----------TCAGTG--CCAGCTGCAATCCTGCGGC s rn3.chr12 16144915 55 + 46649226 TGCCCCCCCCCCCGCCCCGATTGAGCAGCCAGGGAAGCAGCTGGACCAGGAAGGA s canFam1.chrUn 89269645 39 - 91062872 CAGGGACCCTACCAAGAC----------TGGGAC--GGGGTGGGG----GGCAGC a score=90780.0 s hg17.chr7_random 690781 196 + 778964 CGGTTCCCCGTAAAAATCCCGAGACCGAAA--TTCCCCAGCTTCCTCCTATACGGGGCGGCAGCGGCCTGGGAGGTGTTGCTATGGGAATGCTAGAGTGGATTTATCTCCTCTCTTAGCAAATTAATTTTATGAATGTCCACAACGTTGAAACAACTGCAAAACAACACGTTGCAAAGCTGCCCTT-GGGCCTGGGAAC s panTro1.chr6_random 361795 196 - 67355074 CGGTTCCCCGTAAAAATCCCGAGACCGAAA--TTCCCCAGCTTCCTCCTGTACGGGGCGGCAGCGGCCTGGGAGGCGTTGCTATGGGAATGCTAGAGTGGATTTATCTCCTCTTTTAGCAAATTAATTTTATGAATGTCCACAACGTTGAAACAACTGCAAAACAACACGTTGCAAAGCTGCCCTT-GGGCCTGGGAAC s mm5.chr5 12782095 169 - 149219885 TGGCTTCCCAT-AAAATCTTAAGACTGAAA--TT--------------------GGGCAGCA------TGGGAAGTGTTGCCATGGGAACACGGCATTGGATTTATCTCCCCGCTTAGCAAATTAATTTTATGAATGTCCACAGTGTTGAAGCGACTGCAAAACAACACATTTCTCAGCTAGCCCC-AGGCCTGGGAAC s rn3.chr12 16144970 173 + 46649226 TGGCTTCCCATAAAAATCCAAAGACTGAAAAGTT--------------------GGGCAGCA------CGGGAGGTGTTGCCATGGGAACGGAGCAGTGGATTTATCTCCTTGCTTAGCAAATTAATTTTATGAATGTCCACAGTGTTGAAGCGACTGCAAAACAACACATTTCTCAGCTGCCCCCAGGGCCTGGGAAC s canFam1.chrUn 89269684 186 - 91062872 -TGGTTCCCGT-AAAATTCTACCAGGGAGC--TT--CCTGCTCCCTCCTGCACTGGCTGGCGGC----TGTGAGGCGTTGCCATGGAAACTCCAGATTTGGTTTATCTGCTCTCTTAGCAGATTAATTCTGTGAATGTCCACAGTGTTGAAGCGAAGGCACAGCCTCTGCTCTCCAGGCCGCCTCT-GG--CCGGGGAC a score=2834.0 s hg17.chr7_random 690977 54 + 778964 TTTTCCTGGCT---CATCAGAGCCCCGCGCCT-CCTCCCCGCCGACGCCTGAACCAGG s panTro1.chr6_random 361991 54 - 67355074 TTTTCCTGGCT---CATCAGAGCCCCGCGCCT-CCTCCCCGCTGACGCCTGAACCAGG s mm5.chr5 12782264 43 - 149219885 ----ACAGACCTAACATCAGA-----GTGCCTGCCTCCCTGCTGGGGTGT------AG s canFam1.chrUn 89269870 34 - 91062872 ------TTGCC---------------CTGCTT-GCCCCCCA--GACACGTGGACCAGG a score=80836.0 s hg17.chr7_random 691031 933 + 778964 GGACGGCCCATTGTTCAAAATCCACGGGTCGCTGCTGGATGCTTTTAGGAAAGG------GACCCCTGCAAAACAGCACCCCTGGAGGACCCCG--TGCA--------CACCCCGTCATCGGGTGGGGTCAGCTGGGACCCAGCCTGTACCG-----CGAGGCTCCTGGCTGGGGTCTCGGACAGACCCGGCCTGCGCTGCGAGGCTCCTGGCTGGGGTCTTGGACAGTGCCGGTGCCACATTTTGAAGCGTTGCTGCTTACTCGTGGTGCTGCTTACTTGTGGTGGCCCTTTCAGTTCCTACTTGTCGCTCTTTTGGGGCCGCCTTCTGGAGGAGGCTCTGCTGGAGTGCCGGAGCCACAGGGGCCTAAGCCATACATGTTTCCCAGGCATCAGCTCCGGTCCCGGGGCTGGAGAGATGCCGTGGGCCGCAGACACGCCCTGTCCTCTCTCCGGCTGGCGTTCTAGGGGCGTGAGATGCTTTGGAAGGACATGAGGGCTTGGAAGAGACGTGAAGCAGGACCCGACACAGAGAGTGCTGGGAGTGGTGTCGCTTGGGCTGCAGGGAGGGTGGTGGGGGCCGTGGGGCAGGGGCCTGGATACCGGGAGGGAGGG-----GGCTGCAGGCAGCGGTCCAA---GGTGGGAGAGCGGGCAGGGTGAGTCTGGGGGGCTC-----CGGTTGCAG-AGCTCTGCTGACCGGGGTTGGAACGCCAGCGTTACTCTGGGTGTGACGGCCGCAATGGCCGGAGTTGGGGGCTG----ATTTGC---AGAGGAGGGAGATAGTCCAGCTGCTTTGCCGAGGGCCGTGCCACGTGGCGAATAAACCA-GACAGGAGCAGGCCGGCC---ACAGCACAGGGCAGTCACC----------------------------CTGAGGGGACGGCGGGGGATGAGGGAGGGCTCGGGGACTGCTGGGCAGGCAGTGGGGGGACGGGTATTGAAGTAGGAGTAGGAGTCTGCCAGATGGAGGG s panTro1.chr6_random 362045 892 - 67355074 AGACGGCCCATTGTTCAAAATCCACGGGTCGCTGCTGGATGCTTTTAGGAAAGG------GACCCCTGCAAAACAGGACCCCTGGAGGACCGCG--TGCA--------CACCCCGTCGTCGGGTGGGGTCAGCTGGGACCCGGCCTGCACCA-----CAGGGCTCCTGGCTGGGGTC-----------------------------------------TCTCGGACAGTGCCGGTGCCACATTTTGAAGCGTTGCTGCTTACTTCTGGTGCTGCTTACTTGTGGTGGCCCTTTCAGTTCCTACTTGTCGCTCTTTTGGGGCCGCCTTCTGGAGGAGGCTCTGCTGGAGTGCCGGAGCCACAGGGGTCTAAGCCATACGTGTTTCCCAGGCATCAGCTCCGGTCCCGGGGCTGGAGAGATGCCGTGGGCCGCAGACACGCCCTGTCCTCTCTCCGGCTGGCGTTCTAGGGGCGTGAGATGCTTTGGAAGGACATGAGGTCTTGGAAGAGACGTGAAGCAGGACCCGACACAGAGAGTGCTGGGAGTGGTGTCGCTTGGGCTGCAGGGAGGGTGGGGGGGGCCGTGGGGCAGGGGCCTGGATACCGGGAGGGAGGG-----GGCTGCAGGCAGCGGTCCAA---GGTGGGAGAGCAGGCAGGGCGAGTCTGGGGGACTC-----CGGTTGCAG-AGCTCTGCTGACCGGGGTTGGAACGCCAGCGTTACTCTGGGTGTGACGGCCGCAATGGCAGGAGTTGGGGGCTG----ATTTGC---AGAGGAGGGAGATAGTCCAGCTGCTTTGCTGAGGGCCGTGCCACGTGGCGAATAAACCA-GACAGGAGCAGGCCGGCC---ACAGCACAGGGCAGTCACC----------------------------CTGAGGGGACGGCAGGGGATGAGGGAGGGCTCGGGGACTGCTGGGCAGTCAGTGGGGGAACGGGTATTGAAGTAGGAGTAGGAGTCTGCCAGATGGAGGG s mm5.chr5 12782307 880 - 149219885 AGATTACCT----------------------TTGCAGGAAG-----AAGGAAGGCCAGATAATCACTGCA------TGTCCCTGGGGGTACCTGAATGCAGTGTAGACTAACCCAAGGTTAGTCTGGACCAGTGCTGGCTCAA-CTGTGCCAGGCACCGAGGCTCC---CCGGGGTG------------TGTTTATGCCTCAAACTCACTGT------CCTTACTCAGTGTCACCTCTA-------------TTCTCATGGCTCCTTGAGCTGTCT--TTAATGTCATTCAGTTGGTTCCTATGTTCCTCTCTTTGGGAATTG-TTCCTGGAGAAGGTTTAG-GGGCCTGCAGGAGCTGTGTGGAACCATGCTTCAGATATTTCTCTAGAGTTAAC-----TCCCTTGGCTTTAGGTGTGGCAAACGC--CAGGCA------ACCCTTCTTCTGGAAGAGGTTCTAAGGGAGCCAGACATTGTAGAGAGACACAACG----------GAGGTGGGGCAGGGTTT--TGGAAAGAACACTGAA--------TGCCTGGAACACAGGATGTCTCAGACGTGC----AGGCAGGAA-CTAGATCTGGGGAGTGAGGGTCTTAGTTCCTAGTCTGTGCTGGAACTGGCTGGGGGAGAGGG------GAGTACAGAGAATTCTCAGGCAGTTGTTGAAGGTCTGCTAGCCAGGGTCTTTCAGGTAGTTTTATTCAGGATTTGA-------GATGGCC---ATTAGAGTGTGTGATACTTGCCAAAAAAAAGAAAAATAATCACACAGGGTCGTCTATAACAGAATGAGTTGAACAAAGGATCATGGCGGAAGCAAGACACTCAGGAAGGCAAAAGGTTGTCTCCAGATGACAGATGGGCTATGGTCATGAGACAAAGGCACCAGCAGATGTGGAAGAAGGGGATTGGGATTGCCGTGCTGACGTTCAAGTAGATGTTTCTGAGATAGGAA-AGATGTCTTATAGACGGACGG a score=17602.0 s hg17.chr7_random 691964 190 + 778964 CATCCTGACAGCCTCGGGGACACAGGAGCGCGGGAGGGTGGGGCGAGGCTACGCAAGAGCGGAGCTGCAAACCCTGGGCAGGGAAGGCTCCCAGGCCCCCCGAGCTCCTTGACGGGGGGTATGAAAGTCGCTTTATAACATTCTGCCTGGACACCACAGCCTCTTCTGAGAGCCAAGTGAGAAGTGCTCA s panTro1.chr6_random 362937 190 - 67355074 CATCCTGACAGCCTCAGGGACACAGGAGCGCGGGAGGGTGGGGCGAGGCTACGCGAGAGCGGAGCTGCAAACCCCGGGCAGGGAAGGCTCCCAGGCCCCCCGAGCTCCTTGACGGGGGGTGTGAAAGTCGCTTTATAACATTCTGCCCGGACACCACAGCCTCTTCTGAGAGCCAAATGAGAAGTGCTCA a score=10251.0 s hg17.chr7_random 692154 99 + 778964 GAACCAAATCCCT---------------GGCCCACCCTTGGCCTCAGGGCCCTGCCACGAGCCTGCGGTCAACCTTCCGGAGGCCTAGGAGT-----ATGTGCCTGTG----GGGGAACCTGC s panTro1.chr6_random 363127 99 - 67355074 GAACCACATTCCT---------------GGCCCACCCTTGGCCTCAGGGCCCTGCCAGGAGCCTGCAGTCGACCTTCCGGAGGCCTAGGAGT-----ATCTGCCTGTG----GGGGAACCTGC s mm5.chr5 12783446 120 - 149219885 GACCCAAACTCCTCTCATGAGTCAGCAGGGGTTATCCATTGCCTTAGGCTCC--CAAGGGGCCTCTGAACACCCATAT-GAAACCTAAAGGTTTTACATCTGTCCCTGTCTTGGGGGACATGC a score=12764.0 s hg17.chr7_random 692253 139 + 778964 ACCGGCCGCGCGTCCTCCCTCCTCTCGCGGGTCAGGGCAGGTGAGATCCGCCGAGGTGCCGGGCTTGGCCTCTGCCCAGCGGTCACTGTGGGTGGGTGCCAAGTCTTCCCTGTCTGAGGGAAATCTCAGCGCATCTTGA s panTro1.chr6_random 363226 139 - 67355074 ACCGGCTGCGCGTCCTCCCTCCTCTGGCGGGTCAGGGCAGGTGAGACCCGCCGAGGCGCCGGGCTTGGCCTCTGCCCAGCGGTCACTGTGGGTGGGTGCCAAGTCTTCCCTGTCTGAGGGAGATCTCAGCGCATCTTGA a score=6647.0 s hg17.chr7_random 692392 43 + 778964 AAGGGGGCCCATTTGGCCTGGC--CTCTAGCAGGAAAATAAAAAC s panTro1.chr6_random 363365 43 - 67355074 AAGGGGGCCCATTTGGCCTGGC--CTCTAGCAGGAAAATAAAAAC s canFam1.chrUn 89270114 45 - 91062872 AAGGAGGCTGATGGGCTCAGACTTCTCTAGCAGAAAGATGACCAC a score=14250.0 s hg17.chr7_random 692435 65 + 778964 ATTCCTTCTGGGCTGGACTGGAAGAAACACTTTTCCAGAACCCCGGG-----GCTGGGCTCTGAGCCCTC s panTro1.chr6_random 363408 65 - 67355074 ATTCCTTCTGGGCTGGACTGGAAGAAACGCTTTTCCAGAACCCCGGG-----GCTGGGCTCTGAGCCCTC s mm5.chr5 12783763 57 - 149219885 TTTGCCTCTGTGCT-GACTGGAAGGAAC---TCTCAAGAGCC---AA-----GCAGGGCTCAGAACCCC- s canFam1.chrUn 89270159 69 - 91062872 TTTCCTTCTGGGCTGCACTGGAAGAAGC-CGCTTCCAGAGCACCCGGGCCCTGCCTGGGTCGGTGCCCTC a score=55748.0 s hg17.chr7_random 692500 513 + 778964 CACCTGGGCCCTGTGTGGACTTTGTGCATGCGGACATCTGCGCGGGGACAGTG-ACGGTTCCAGGGCCCTCGGGGTCTGGCCCTGGGGTGGCCCTGTCCGTGGGGTCTGCGGGCTCACTGGCCAGGGTCATTACG----GGTGTGAGAGCTTCCTCGGTGCTTAGAGGGACTCCGGCCTCACCCTGCCTGCTGTCCACCAGGTGCCAGCATCCCTCCCCTGGGCTGCGAGTGCCCCTGCTCTGCTCAGACCCT--------GCTGGGGCAGGCTCCTGAGTGCTCCAGCGGCCACAGCTGACCGAGAGGGACACACAGGTCCACCCGGCTCTGACCCA-CATCCCTCTTGTTGCAGGGCAGCC-TCGTCATCCCAGGAGCAGGGGAGGGGCTGCATGCCCCCTGGCCCCCCTTTGTAGGCAAAGCTCCCCCAGGGCCTTGGGCACAACGGGCTGTGTCCCGGGCACGTCACGGCTGCCCTCTCCCAGTGAGCTGGACGTTCGGCCCAGCAGCTTGGGGGCCGGGGAGA s panTro1.chr6_random 363473 513 - 67355074 CACCTGGGCCCCGTGTGGACTGTGTGCACGTGGACATCTGCGCGGGGACAGTG-ATGGTTCCAGGGCCCTCGGGGTCTGGCCCTGGGGTGGCCCTGTCCGTGGGGTCTGCGGGCTCGCTGGCCGGGGTCATTACA----GGTGTGAGAGCTTCCTCGGGGCTTAGAGGGACTCCGGCCTCACCCTGCCTGCTGTCCACCAGGTGCCAGCATCCCTCCCCTGGGCTGTGAGTGCCCTTGCTCTGCTCAGACCCT--------GGTGGGGCAGGCTCCTGAGTGCTCCAGCGGCCACAGCCGACCGAGAGGGACACACAGGTCCACCCGTCTCTGACCCA-CATCCCTCTCGTTGCAGGGCAGCC-TCGTCATCCCAGGAGCAGGGGAGGGGCTGCATGCCCCCTAGCCCCCCTTTGTAGGCAAAGCTCCCCCAGGGCCTTGGTCACAACAGGCTGTGTCCCGGGCACGTCGTGGCTGCCCTCTCCCAGTGAGCTGGACGTTCGGCCCAGCAGCTTGGGGGCCGGGGAGA s mm5.chr5 12783820 461 - 149219885 --CCTGTGCC---TGTTGATTCCAAG-GTGTGGGGGCTTTCTCAGGGGTTGGGCATTATTCTC--ACCCTGTGTGTCTGGCACTGGGTGATCTCATTCACTAGTGTTTTTCAGCTTGTTGGCTGGACTCACTGTGACGAGCTGTCAGGATTCCC-----------GGGAAGTCTGGCTTCATCATGCTGGC--ACCACTTGGT------------------GATCATGAGTGCC----CTCTGCTCAGACCTTATCCAGAAGGCCAGGGAAGCTCCTAA------CAGCAG----AGCCCACCAAGAGGATTGCAGAGGACCA-TGGACTCTGATCCATCTTCTTTCTCAT----GGACAGCTAACATGGTCCTTTGAGTCAGCGGGACTCGGTGTTCCCTTTG---CCCTGATGTGG---AAGAACTCTTAGGG-CTTGTTTGCCA-AGGCCCCATCCTGGGTAAATCACAGTTGCATTCTCTTAGTG-GCTGGATGTTGGGTGCTACAGCTCATAGGGAAGGAAGC a score=2419.0 s hg17.chr7_random 693013 25 + 778964 GCTTCCCAGCACCCGGCTGAACTGT s panTro1.chr6_random 363986 25 - 67355074 GCTTCCCAGCACCCGGCTGAACTGT a score=6599.0 s hg17.chr7_random 693038 64 + 778964 GAGATGGCTC-CAGGGGAC-AACTGTTTTCCCAAAGGCATGGGACGTCTTCACTTGCCTTTCAGCG s panTro1.chr6_random 364011 64 - 67355074 GAGATGGCTC-CAGGGGAC-AACTGTTTTCCCAAAGGCATGGGACGTCTTCACTTGCCTTTCAGCG s mm5.chr5 12784320 53 - 149219885 ATGATGGCTCACAGTGGATAAACTGACCTTCCAGATGTA-----------CACTATCCTTT--GGT a score=7899.0 s hg17.chr7_random 693102 83 + 778964 TAAGTGAGTTTCGATGTGAATTGGGGCGGCCG------------GCAGGCTGTTCTCTGCGTGGATAGAGGGCCAGGTGTGAGGCTGAGGCCTTG- s panTro1.chr6_random 364075 83 - 67355074 TAAGTGAGTTTTGATGTGAATTGGGGCGGCCG------------GCAGGCTGTTCTCTGTGTGGATAGAGGGCCAGGTGTGAGGCTGAGGCCTTG- s mm5.chr5 12784373 63 - 149219885 TCAGAGATTTCTTGCAGGATTCAGAGCCTCTGTA----------GCAGGCTGTTCTC----------------------TAAGAGTGAGCCCCTA- s canFam1.chrUn 89271193 87 - 91062872 TAAGTGCACTTCAGTGTGACTTGGGGCTTTGGTGCTGGCTGCCCCCAGACTGTTCT----GTGGACGAAAAATCAC-----AGGCCGTGCACGTCG a score=2184.0 s hg17.chr7_random 693185 42 + 778964 GTCAGCTCACGCTCAGGGTTTCTGCTTTGGGAGACA-----------------AGAACC s panTro1.chr6_random 364158 41 - 67355074 GTCAGCTCACGCTCAGGGTTTCTGC-TTGGGAGACA-----------------AGAACC s canFam1.chrUn 89271280 56 - 91062872 GCTAGCTAGCAGCCAAGGCTGGAGC-TCAGAGGAAAGCCTTTCCTAAaaaaataaaa-- a score=975.0 s hg17.chr7_random 693227 189 + 778964 TTCAAAGTAATTTCTTCAAGTAAAA---------------TGCCGCTTGC-GGACTGAGAC-AGGGACGCCGAGGCGTCTTCAGCAAAGGATGGTCCCATTTGTGTGGTTCCTTTGACAA-----GTGCCTTTGCCTTGATATTTTCTCTCTGATTTTTTTTTTTGTTAATGTAAGTAACATTATACAAAGTTTAACACCCTCTCCCCCAC s canFam1.chrUn 89271336 164 - 91062872 ataaaaataaaaTTTTAAATTAAAAAATTCTGCAACAAAGTGTCACTTGCTGGAATAAGGCCAGTGACACAGAAGGGTCTTTAGGAAAGCATTGTACCCCCACCTCCATCCCCACGGCAGCTCATGTGTCTTCTCCTTGATGGCTTCTTCCTGACTTTTGTTGT----------------------------------------------- a score=570.0 s hg17.chr7_random 693399 17 + 778964 AACACCCTCTCCCCCAC s mm5.chr5 12784669 17 - 149219885 AACATTCCTTCCCAGGC a score=-513.0 s hg17.chr7_random 693416 10 + 778964 CAAAAAAAAA s mm5.chr5 12784686 3 - 149219885 CAG------- s canFam1.chrUn 89271500 10 - 91062872 CAGCATAAGA a score=3751.0 s hg17.chr7_random 693426 152 + 778964 AAAATAACAACT------------------------CTAAAAAGCACCATCTTCCTCCCTCCCTCAACCCTCCCCTCCCAGAGACCGAACCACCCCCCGCGGGCCCCGGCTTT---CCATTGCAGACATTTCCAGATCTTGTTTCCCACCCGTATCTCGGGGCACCGCCGCGCAGGCGT s mm5.chr5 12784689 125 - 149219885 -----------T------------------------GTCAAAGGCATCACCACCAGTCCTTC---------TCCTTCTCAGAG-CCACAGCAGCCCCCAC-ATCCCAGGCCAT---CCATTGCAGACGCTG--GGATCCAATTTCCCATC---ATCCTTGGCCTGCCAGCCACATGTGT s rn3.chr12 16147532 164 + 46649226 AAAACAGCAACTCGGAACATTCCTTCCCAGACCAGGGTCAAAGGCATCATCACCATCTCTTCA--------ACCTCTCCAGAG-CCACAGCAGCCCCCAC-GTCCCAGACCCTCTCCCATTGCAGACGTTG--GGATCCAATTTCCCATC---ATCCTTGCCCTGCCAGCCACATGTGT s canFam1.chrUn 89271510 94 - 91062872 AAAGTGAAGAGT------------------------CTGGGGGGTGT------------TTG---------CCCTAGATGGAG---ACAGCACCCCCCAC------AGAGAGC---CCATAGGAGCCCTTG--GGGCCT--------------------------CCACCCGCAGGCCT a score=0.0 s hg17.chr7_random 693578 19 + 778964 TCCCAGACGAGACAGATGT a score=8516.0 s hg17.chr7_random 693578 19 + 778964 TCCCAGACGAGACAGATGT s panTro1.chr6_random 364814 19 - 67355074 TCCCAGACGAGACAGATGT s mm5.chr5 12784814 18 - 149219885 -CCCCAGCGAGACAGATGT s rn3.chr12 16147696 18 + 46649226 -CCCCAGCGAGACAGATGT a score=51620.0 s hg17.chr7_random 693597 158 + 778964 GGAATGCAGTGGCTGG-TTCCAAGGTCCCGGATTACCCTGACCAGATTCCTGGCAGCAAAGCGAGGAGACTTAAGCACCATGCAAAGACTATTGCCGTAAAGACGGATGTTTTGGCTGGGAACATCCTAACAGATGCGCA------------------GTTCTGGACAAATCGATTT s panTro1.chr6_random 364833 156 - 67355074 G-AATGCAGTG-CTGT-TTCCAAGGTCCCGATTTACCCTGACCAGATTCCTGGCAGCAGAGCGAGGAGACTTAAGCACCATGCAAAGACTATTGCCGTAAAGACGGATGTTTTGGCTGGGAAAATCCTAACAGCTGCGCA------------------GTTCTGGACAAATCAATTT s mm5.chr5 12784832 173 - 149219885 GGAATGTATCTGCTGGCTTCCACAGTCCGGGATTACCCAACTGAGATTTCTGGCTCCTCA--GAGGTGCCTTAAACACTATGCAGAAGTGGTTGCTATGAGGATACATGTTTT-GCTGGGAA-ACCCAAACAGATGCACAAGCCAGTCTAGATAAGCCAGTCTGGACAAGTCAGTCT s rn3.chr12 16147714 173 + 46649226 GGAATGTATCTGCTGGCTTCCACAGTCTGGGATTACCCAGCTGAGACTTCTGTCTCCTCA--GAGGCGCCTTAAACACTGTGCAGGAGTGGTTGCTATGAGGATGCATGTTTT-GCTGGGAA-ACCCAAACAGATGCGCAAGCCAGTCTAGATAAGCCAGTCTGGACAAATCAGTCT s canFam1.chrUn 89271604 121 - 91062872 GAAGTGTGTTTGCTGG---CCACGACCCCG--------------------TGG---------GAGGAGTGCTGAGCAGCACACAGA--CCACAGCAGCAAAGATGGGTATTTC---AGGGAA-ACCCTAACAGATGCACC------------------GTTCTGGACAAGTCAGTTT a score=0.0 s hg17.chr7_random 693755 44 + 778964 GCAGCACCCCACGGTCGTCCACCCCCCGCAGCAGGGGCTGGCCG a score=76.0 s hg17.chr7_random 693755 22 + 778964 GCA---------------GCACCCCACGGTCGTCCAC s panTro1.chr6_random 364989 22 - 67355074 GCA---------------GCACCCCACGGTCGTCCAC s mm5.chr5 12785005 37 - 149219885 GTGGAGCCTCGAACCATTGCATCCCATGGCTGCCCAC s rn3.chr12 16147887 13 + 46649226 GTG---------------GAGCCTTGAA--------- a score=1773.0 s hg17.chr7_random 693777 22 + 778964 CCCCCGCAGCAGGGGCTGGCCG s panTro1.chr6_random 365011 22 - 67355074 CCTCCGCAGCGGGGGCTGGCCG s rn3.chr12 16147900 13 + 46649226 CCATTGCATC---------CCG a score=40190.0 s hg17.chr7_random 693799 658 + 778964 TGGTGGCTGTGGTCCTGCAGGCAGTGGGTTGTGGACATTCCCTCCCTTGTGGGGGGTGGTCTGCTCCCCTCCTCCCAGACCTTCTGATGATGTTGAGTGAAGCCGGGGCCCTTGAGCACTTGGTCCTTCTGGGAAGTC-CGCATGCCCGGGGC---GGGCCAGCTCCAGGTGGTGAACAATGGTCTCTGGGAGGAAGTTGTCCTCCTGTGTTCTAAATTTGGC--CACGCATGTCTCTCTGATTCAACAGCCAGGTTCTCAGTCCCACAGCTGTGGCCTGCTGGCCCTGCTGTCCCTCCCCAGAGTCAGCTGCCGGAGGAACTTGGTGAAAAGGCTCCTGAGGGGGCAGCTTCCCCAGGAGCAGGACACAAGGTCACCTACCTTGTGGCTCGGCCATGCCTCCAG-GACAGGGGTGGGAAACGTGTGGGGCCAGACC-------GAGGGGGTGCTTAGCGGCACGG-GGGGCTGTGACCTCACCCTGGCCATGACCCCCGAGCATGGGTGAGACTG-----------TGAGGCAGTATG--AGCTGAGGCCATAGGTGGAGTGAGTTGAGGTTCCAGTGGCCAGGCCCTTTTAAAAAT--GTTTTGtttttaaaaattgtgataaaatacagataacgtgaaatttaccatcatgaccatttctaggtgtacagttcagtggcattaa s panTro1.chr6_random 365033 657 - 67355074 TGGTGGCTGTGGTCCTGCAGGCAGTGGGTTGTGGACATCCGCTGCCTTGTGGGGGGTGGTCTGCTCCCCTCCTCCCAGACCTTCTGATGATGTTGAGTGAAGCCGGGGCCCTTGGGCACCTGATCCTTCTGGGAAGCC-CGCATGCC-GGGGC---GGGCCAGCTCCAGGGGGTGAACAGTGGTCTCTAGGAGGAAGTTGTCCTCCTGTGTTCTAAATCTGGC--CACGCATGTCTCTCTCATTCAACAGCCAGGTTCTCAGTCCCACAGCTGTGGCCTGCTGGCCCCGCTGGCCCTCCCCAGAGTCAGCTGCCGGAGGAACTTGGTGAAAAGGCTCCTGAGGGGGCAGCTTCCCCAGGAGCAGGACACAAGGTCACCTACCTTGTGGCACGGCCATGCCTCCAG-GACACGGGTGGGAAACGTGTGGGGCCAGACC-------GAGGGGGTGCTTAGCGGCACGG-GGGGCTGTGACCTCACCCTGGCCATGACCCCCGAGCATGGGTGAGACTG-----------TGAGGCAGTATG--AGCTGAGGCCATAGGTGGAGTGAGTTGAGGTTCCAGTGGCCAGGCCCTTTTAAAAAT--GTTTTGtttttaaaaattgtgataaaatacagataacgtgaaatttaccatcatggccatttctaggtgtacagttcagtggcattaa s rn3.chr12 16147913 540 + 46649226 TGGCGGCC---------CACACAG---------------CCCTAC--------GGCCCCTCTGCTGCCCTCCATACAGACCTTGGAATACGAGGAAGCATGACTGTG----TTGGGC------TCATCTTGGGAAACTACACATA---GGAGCACTGTGCATG--------GGTCATCAGTGGTC-CTCCCAAGGAGCTGT-CTCCTGACCTCTAACCTTGGCTTCCTTCCTAACACTCCCATGCACTGGCCA-TTGCTTA--TCTACAGTCCTAGC-----------ACTGTCT----------------------AGGACTCAGCTCAAAGGCTTCAAAGGAGAAATGGCTGTCAACAGCAGAGC-----GTAACCT--------------CCACACCCCCAG-GAAGTGGGCTGGGTCCAGTCAGGGCAGGAACAACAGTTGAGATATTGCCCAGCAGCATGATGGGGCTGGGCACT-------GCCA-GTTGGCGGGGTGTGGAGGAGGCCAGAGTAGGCTCCTGAAGGCGTGTG-----CAAAACTCCGGGTGGGGTGAACTGAAGC-----TGGTCACACACAGTTGGA-----GTTCCA------------GTGAGAAAATATAAATCACGAGAAGTTC-CCAT-GTAAACATATCTACAAGGACAGTTTGGTGGCATTGA s canFam1.chrUn 89271725 427 - 91062872 TGGGGGCTGTTG----------AGT--------------CCCCACTTTGGAG-------CCAGGACCCCCCCACCCAG--------------------GGACTCAAGGCTTGCAGGC---TGTGCCCCACTGGAAGTC-CA-------GGCAC---------------------CAGCAGTGGG--CTGCAAGAGGGGTGT-TCCCAGTGTCC----CTTGGG------------------------------------------------TGGGGC----------------CACTTCCCAG--------------GGAGCGTCAT------GCTTGTGACGAG----------------------------------CCCTTGTGAGCCACTTGAGCCACTTGAGACAGAGGGTGGAGGAGTGTGGGG-AGGACA-------GAAG---------GCCACATGA-GGAGC-----------CCAGAGCGTGACCCC-------------AACTG-----------TGCAGGGACAGGAGAGCTGAAGTCCAGGCAGGGGATCAGTCAGGATTCAGGGACAGGGCCCTCTTTGAAACAATCTCTAtttttctatattgtggaaaaatacatataatatacaacttgctatgttgaccatttctcagcatccagttgaggggcactga a score=44187.0 s hg17.chr7_random 694457 381 + 778964 gcaggtcattttgctgtgtggctg----tcaccaccatc-atctccagaatgtttcatcttcccaggctgaagctctgtccccaccaaacacacactccccacccccctct---cccagcccttctagaaagtagaaccacccttctcctttctgtctctatgagtttgaactctactgcctgctataagggagatctgacaggatttgtccctctgtgactagcttatttcacttg-catagtgtcctcaagggccatccatgttgtagctagcaggtgtcagaatgtccttccttttcaaggctgaataatattccgttgtttgagtggcccacattgtgtttatccaGCCAAGCCTGTTTTTTATTTTGCTGCTACTGCTGCTGCTG s panTro1.chr6_random 365690 381 - 67355074 gcaggtcattttgctgtgtggctg----tcaccaccatc-atctccagaatgtttcatcttcccaggctgaagctctgtccccaccaaacacacactccccacccccctct---cccagcccttctagaaagtagaaccacccttctcctttctgtctctatgagtttgaactctactgcctgctataagggagatccgacaggatttgtccctctgtgactagcttatttcacttg-catagtgtcctcaagggccatccatgttgtagctagcaggtgtcagaatgtccttccttttcaaggctgaataatattccattgtttgagtggcccacattgtgtttatccaGCCAAGCCTGTTTTTTATTTTGCTGCTACTGCTGCTGCTG s canFam1.chrUn 89272152 309 - 91062872 gcacat--tcctgctgctgggccagcgtccccccccatctggctccagaacat---------------------tctgtccccatgacacactgaccccacctgcacccctggccccagccctgcca-----------------tttactctctg--tctgtgagtctga----caacacc----------gggacct-------tgtatccttctacgtctgacttatgtcacttgacctcatgtcctcagcg--tgtccctgcag----tggcaggtgtc----cttccttcctttctgagatggagggacgctcca----tcgggtagaccaca---tgtctgtccaacc-agccCCCTTTATAATCTGCTAACAGTGGTGCTGATG a score=13151.0 s hg17.chr7_random 694838 233 + 778964 CCACCACtgatggtgatgatgatggcggtgatggtgatgaaggtgatggtgatgatgatggtgatagtgatgatggtgatggtgatgaaggtgatggtgatgatggtgatggtgatgaaggtgatggtgatgatggtgatagtgatgatggaggtgatggtga---tgatgatggtgatgatggtgatg-----------atgatgGAggtgatggttataaggatggaggtgatggtgatgatgat s panTro1.chr6_random 366071 220 - 67355074 CCACCACtgatggtgatgatgatggcggtgatggtgat---ggtgatggtgatg------------ctgatgatggttatgatgatgaaggtgatggtgatgatggtgatagtgatga---tgatggaggtgatggtga---tgatgatggaggtgatgatgaaggtgatgatggtgatgaaggtgatgtgatgacaatagtgatgAAggtaatggtggtaag------ggtgatggtgaaggtgat a score=3147.0 s hg17.chr7_random 695193 36 + 778964 GTGCTCAAGCTGCTCGACGGCCGCAGTGTGATGGAT s mm5.chrY 11656727 36 + 47900188 GTGCTCGAGCTGCTCGACGGCCGCCGTGTGATGGAT a score=91.0 s hg17.chr7_random 695229 1 + 778964 T s panTro1.chr6_random 654477 1 - 67355074 T a score=600.0 s hg17.chr7_random 695230 1 + 778964 C s panTro1.chr6_random 654478 1 - 67355074 C s mm5.chr5 136399968 1 + 149219885 C s rn3.chr12 30466979 1 - 46649226 C a score=100086.0 s hg17.chr7_random 695231 156 + 778964 TCTCCATAAAAGGAGGGGGAGTCAGTCTTTGGGGAAGGAGG-----------GGGGCGGGTTTGGGGCACTCACCTGGCGGCTGCCACGCGCCCCCGCCCAGGATCCGAGGCCTGGGGCATCTGAATGAGGACCCTCCACCCACATTTCCACTTGGGAGCGAGCTCC s panTro1.chr6_random 654479 156 - 67355074 TCTCCATAAAAGGAGGGGGAGTCAGTCTTTGGGGAAGGAGG-----------GGGGCGGGTTTGGGGCACTCACCTGGCGGCTGCCACGCGCCCCCGCCCAGGATCCGAAGCCTGGGGCATCTGAATGAGGACCCTCCACCCACATTTCCACTTGGGAGCGAGCTCC s mm5.chr5 136399969 167 + 149219885 TCTCCATAAAAGGAGGGGGAGTGAGTCTTTGCGGAGAGGCGGGGCGGGTTTAGGGGCGCGTCTAGGGCACTCACCTGACGGCTGCCACGCGCCCGCGCCCCAGAGCCAAAGCCTGGGACACCTGATTGAGGAACTTGCACTCTTGTGTGGAGGTGGAAGCGAGGCTA s rn3.chr12 30466980 167 - 46649226 TCTCCATAAAAGGAGGGGGAGTGAGTCTTTGCGAAGAGGCGGGGCTGGTTTAGGGGCGCGTCTAGGGCACTCACCTGACGGCTGCCACGCGCCCGCGCCCCAGAGCCAAAGCCTGGGACACCTGATTGAGGAACTTGCACTCTTGTGTGGAGGTGGAAGCGAGGCTA s canFam1.chrUn 1759313 167 + 91062872 TCTCCATAAAAGGAGGGGGAGTGAGCGTCTGGTGAGAGGTGGGGCGGCTGCAGGGGCGCGTCCGGGGCACTCACCTGGCGGCGGCCACGCGCCCCCGCCCAGAATCCGATGCCTGGGGCGTCTGAATGAGGCACTTCCACCAGCATCCCGAGATGGGAGAGCGCCCA a score=232670.0 s hg17.chr7_random 695387 710 + 778964 AGTCGGGGAAAGGGCCTGCAGCCCGCCTCGTCCCCACCCTGGGACCCCGCGCCCCCCAGTCCCCCACTCCCGCGCCGAAGGCAGGGCCGCGCCCTGAGCCGGGAAGTCGAGGGGATGGAAG--------GGAAAGGA---------GCCACCGGTGAGGGTCCCCCGGGTTCT------GAGCCTCCCGCGTCGGGATCCGTGGGGCGCACAGAGCGCCACCTCCGGCCGAGGCGCAGCTCAGAGCGCGATGCGGGGGAGGAACGCGCGCGGAGGCCGAGGTCTGAGCGTGGCTAGACGGCTCCCACGCCGAGAAAGGGCGGGTGCGCCTGGGCTGGATGGATTTCGCCTCCCTAGACCAGGAGGGATTGGACCCTGACTACAGGTCCAGGTGCTCGTCAGTGCCCTGCCAGGGGGTCTACGCGTCCTGGTACCGGGTCCAGCGGGGTGGCGTGCTGTGCAGACCCCGAGGCTAGAC--GGCCTAGGCCCCTGGAGCCCAGGAGACGCT----TCCTTGGGTGAGCAGCGGA--------GAATCCCGCCCGGCCCA--GCCGTCACC--------------CCCAACCCTGTCGATTAAACCCCTGCCCCCGTCGCGG------TCGCCCTCC------------CTCCAGACAAAGGCCGTTAAGGCGCAGCCCCGCGGGCGGTCTTTCATCCCCAGCTAGGCC-AGCTCTAGCATTTCAAAGGCCGAATCCGGAGAGCGCTTCGGGGGC-TCTCCCCTTCATTTAAATATTTGGGGAGCG----- s panTro1.chr6_random 655055 710 - 67355074 AGTCGGGGGAAGGGCCTGCAGCCCGCCTCGTCCCCACCCTGGGACCCCGCGCCCCCCAGTCCCCCACTCCCGCGCCGAAGGCAGGGCCGCGCCCTGAGCCGGGAAGTCGAGGGGATGGAAG--------GGAAAGGA---------GCCACCGGTGAGGGTCCCCCGGGTTCT------GAGCCTCCCGCGTCGGGATCCGTGGGGCGCACAGAGCGCCACCTCCGGCCGAGGCGCAGCTCAGAGCGCGATGCGGGGGAGGAACGCGCGCGGAGGCCGAGGTCTGAGCGTGGCTAGACGGCTCCCACGCCGAGAAAGGGCGGGTGCGCCTGGGCTGGATGGATTTCGCCTCCCTAGACCAGGAGGGATTGGACCCTGACTACAGGTCCAGGTGCTCGTCAGTGCCCTGCCAGGGGGTCTACGCGTCCTGGTACCGGGTCCAGCGGGGTGGCGTGCTGTGCAGACCCCGAGGCTAGAC--GGCCTAGGCCCCTGGAGCCCAGGAGACGCT----TCCTTGGGTGAGCAGGGGA--------GAATCCCGCCCGCCCCA--GCCGTCACC--------------CCCAACCCTGTGGATTAAACCCCTGCCCCCGTCGCGG------TCGCCCTCC------------CTCCAGACAAAGGCCGTTAAGGCGCAGCCCCGCAGGCGGTCTTTCATCCCCAGCTAGGCC-AGCTCTAGCATTTCAAAGGCCGAATCCGGAGAGCGCTTCGGGGGC-TCTCCCCTTCCCCCAAATATTTGGGGGGCG----- s mm5.chr5 136400137 646 + 149219885 GGTCGGGGAGGAGG-CTGCCTCCTGCCTCATCGCCACCTTGACACCCTGCACCCTCCAGATCCTTAGCCCCTGGCCGAAGGCCTAGCCGAACCCTGAA-TGGGGAGCTGGAGGGATAGAAGGAAAGATAGAAAAGAA---------GCGGCTGGTGAGGAACTCCTGGGTTCT---------------ACCTTGGGATCCA-AGGCAGCGCAGAGCGCCACCTCCGGCCAAGGCACAGTACAGA-CGGGTGGCGGGGAAGGCACATGCG----GACAGAAGTCTGATCAGGGCTGGACGGTTCTCCCATTGAGAGA--------------------GATGGATT-------------CCTGGTGGGATGTGACCC-GACGGCAAGGCCAG--TCCTGTCAGCTCCTTAACTCGGGTTAGA------------------------GGATTGTGGACCTTTCAAATCCCAAAGTTAGCC---TCCTAGGGCTCTGGAGACTATG-GAGGGC----TCCAAGGGTAGGGATGCAAC------TGGATACAGCCTG-TCCA--GT--TCACT--------------CCCTTTCATGTGAATT-AACCCGTGCACCCAGCCCGGGTCCAATCCCCCACCAATCTTCTTTGTCCCCAGACA---------AAGGCGCAGCCGGGCAGG-AGCCTTTCATCCCCAGCTTCCCG-GGTTCCTGCATTTCAAAGGCTGAGCTGGAAGGGCCCAACACGGGCGGCTCACCTAGCTCCAAATACCTGGTGGGCG----- s rn3.chr12 30467148 657 - 46649226 AGTCAGGGAGGAGG-CTGCCACCTGCCTCATCGCCACCTTGACACCCTGCACCCTCCAGATCCTTAGCCCCTGGCAGAAGGCCCAGCCGCACCCTGAA-CGGGTTGCTGAGGGGATAGAAGAAAAGATAGAAAAGAA---------GCCGCGGGTGAGGAACTCCTGGGTTCT---------------GCCTTGGAATCTA-AGGGAGCGCAGAGCGCCACCTCCGGCCAAGGCACAGTACAGACCGGGTGGCGGGGAAGGCACATGCG----GACAGAAGTCTGATCAGGGCTGGACGGTTCTCCCACTGAGAGA--------------------GATGGATT-------------CCTGGTGGGATGTGACCC-GACGGCAAGGCCAG--ACCTGTCAGCTTCTGGACATGCATTGGA----------------GTTAGA--GGATTGTGGACCTTTCAAATCCCAAAGCTAGACAGAGCTTAGGGCTCTGGATTCTATGACGCGC-----TCCATGGGTAGGGGTGCAAC------AGAATCCCGCCCG-TCCA--GT--TCACT--------------CCCTTTCATGTGAATT-AACCCGTGCACCCAGCCCGGGTCGAATCCCCCACCAATCTCTTTTGTCCCCAGACA---------AAGGCAGAGCCGGGCAGG-AGCCTTTCATCCCCAGCTCCCCCGGGTTCCTGCATTTCAAAGGTCGAGCTAGAAAGGCCCCACGAGGGCGGCTCACCTAGCCCCAAATACCTGGTGTGTG----- s canFam1.chrUn 1759480 676 + 91062872 GGTCGGAGGAGGGGGCTGCGGCGTATCTGATCCCCAC------------------------------TCCCTCGTGGAAGGCTGGGCTGCGGCCTGAGCCAGGAACTCGAGGGGGCGGAAG--------GGAAAGGAGAGCTAGGCGCGGCTGGCGAGAAACCCCCGGAGCCGGAGCCGGAGCCTCCCACGCCGGGATCCGCCGGGCGCACAGAGCGCCACCTCCGGCCGAGGCGCGGCACCGAGCGCGATGCGGGGGAGCAGCGCGCT-GGAGGCCGCGGCCTGAGC-CGGCCGGACCGCTCCCG-GCCGCCGGAGCGCAGGTGCGCCCA--------------------CCCACAGCAGGTGGGATCGGACCC-----------CCGCGGGCCCCTCAA---------GGGCACCCGA----GCCTGGAACGCGGCTGGGAGGGGACACGGGCCCCGC-GACCCCAAAGCTAGAC---GGCGAGGCCCCCGAAGGCTGGAAGACTCCCGGGTCGGTGGGAGGGTGGGCGGCCGCCCGGGAATGCCTCCCG-CCCAAGGCCCCCGCCTCCCGCCCCCGAGGCCCCATCCTGGGGATTAggcccgcgc-cccgcggcgg------ccgcccTCC------------CGCCAGACAAAGGCAGTAAAGGCGTAGCCCCGCGGGCGGTCTTTCAT-CCCGGCTCCGCC-GGCTCCGGCATTTCAAAGGCCGAGTGGGGAGGGCGCTTAGGGGGC-GCTCCCCTTCCCCCTAATACCTGGGGAGGGGGAGG a score=7083.0 s hg17.chr7_random 696097 50 + 778964 ACGCCTCTCCCTCCGCTCCCAGTGGGTCGCGTCTACACGCGCCCTTCCAC---------- s panTro1.chr6_random 655765 50 - 67355074 AGGCCTCTCCCTCCGCTCCCAGTGGGTCGCGTCTACACGCGCCCTTCCAC---------- s canFam1.chrUn 1760156 60 + 91062872 GGGGACCTCTCGCTGTTCCCAGAGGGGGGGGTCCACTAGCACCCTTCCACCTGCTTTCAC a score=5146.0 s hg17.chr7_random 696147 32 + 778964 ACACCTGCAGGCCCCCTCCCCACGTCTCTCCC s panTro1.chr6_random 655815 32 - 67355074 ACACCTGCAGCCCCCCTCCCCACGTCTCTCCC s mm5.chr5 136400836 23 + 149219885 AGGCCTGTAGGCCCCATCACCAC--------- s canFam1.chrUn 1760216 28 + 91062872 ACACCTGCAG----CCTCCCAGTGCCCTGGCC a score=399235.0 s hg17.chr7_random 696179 1399 + 778964 TTCC--------GTTGGCCGCAGCCCC-ACACCACGACCCCCGCGGTCAAGCATGCCCTCTGGGTGGTCAGGACCAAGCGGGA--------CCGG------------GACAGAACCAGGGGAGCCTTGGAAACGTGGAGGAGCCCCTT----------------AAAGCCAGGCCTTGTCCCTCCAGGGGGAACT---TGCGGCTTGGGAGGGG-ACACCCACTGCATGGCTTCTGG-AAAGAGCCGGACTCGCAGGGCCAGGACG---CAGGCCGGACCCCGGCCTCATTCTTCGGCCAGTTATCCCGG-AGTGGCGCGCATCCTGTCTT------CCTGGGCCTCGGACTGCTCGCGCGCAGAGGGGGCCCGAGGACACCTCTGTGGGGTTAGAGGACTCGGTAAGACGG----TGTGGAAGGCAAGGAGGAAGG-TCGCGTTGTATTG-----GGGATGGGGTACCCGTCC--CTCCCAGCT------------TGAGGGATCCTGGGGGTCCTCGCCGCCTCTGAG--GGCCTAGATGGCT-GCTTCCCTCGGCTCCCCTGCCCGGCCTGGAGCTACGGGTGCGCCCAGCTAGAGTTTAGGGCC-ACCTGGGGACGTGCAAGGGGCG--------------CTGGAGCGAGGCGGGGGC--------TGGGGCGGGGCGTGGGTGCTT--CACCCGCGGGGGACGC-AGAGCTTAGGCGAAAGCGGT---GCAGGCATCTCTCTAATCGCCGGCCGCTATTAAAAATAAAACCGCGACCCGTCGCCATGGCGACCACAACAACAGCGGCCGCGCGAGGGAGGCGAAAACTTGTGCAGCCGCGCGACAGCCGCCTTCTGGGGAGACTCGGGGCACG---------ACGCAC--------CCGGCGTGGGACTGGGACCCCCCTGCCCG---GCCCCGCCACATTCT--CCGCCGGATCCCC----GGAAGACACAAGGAGACGTGGACCCC----CACAGGCTTTTTTGG---------GGGGATTGGGCGTTGAAACCGCAGGGCTGACTTAACCAAGAGGTCACCGACTTGGATAAAAAACCCAC---GCCCGCGCGGA-CCCCCCTCCCCG-------GCCTTCGTT--------------------TCCATTCAAACTCCCAGC-GTCCTCATTGCAGCCCCTGGGGAGGGGG-ACGGAGGGACGAGGTGGGTTTCAGGTGCTCGGCC-CAGGAGGGGACGGTGCGACCCGGGCCCCGCCGGCGGGTTT---TGCGCGCG---GAGGCTGCGGCACCTGCCCCGCCCGCCCTGCCGCGATCCTTGCAGAC-GGGGGCGGTCACATGCTTCTTTCTGGCCAGGAATCGAGTTTCACTTCCAGCCGCTATTAGTCGGTTCACACAGTTCACTGCAAACATTTGATAATGAGGCTAAATATACTCCCGCGTC--------GGAGGAGGCGT------------GGGCGTCC-CCGCCCAGGC----------------CCGGG--AGACAGAGG----CGCTGACCCCGGGACAGAG------------------------------CCTGGCTTTGTGCGGGAGGCAGAcgcgc-cccgcgcgccgcccccgAAACATT-CGCACCCCATGCTGAGGCGCGCGTC s panTro1.chr6_random 655847 1397 - 67355074 TTCC--------GTTGGCCGCAGCCCC-ACACCACGACCCCCGCGGTAAAGCATGCCCCCTGGGTGGTCAGGACCAAGCGGGG--------CCGG------------GACAGAACCAGGGGAGCCTTGGAAACGTGGAGGAGCCCCTT----------------AAAGCCAGGCCTTGTCCCTCCAGGGGGAACT---TGCGGCTTGGGAGGGG-ACACCCACTGGATGGCTTCTGG-AAAGAGCCGGACTCGCAGGGCCAGGAGG---CAGGCCGGACCCCGGCCTCATTCTTCGGCCAGTTATCCCGG-AGTGGCGCGCATCCTGTCTT------CCTGGGCCTCGGACTGCTCGCGCGCAGAGGGGGCCCGAGGACACCTCTGTGGGGTTAGAGGACTCGGTAAGACGG----TGTGGAAGGCAAGGAGGAAGG-TCGCGTTGTATTG-----GGGATGGGGTACCCGTCC--CTCCCAGCT------------TGAGGGATCCTGGGGGTCCTCGCCGCCTCTGAG--GGCCTAGATGGCT-GCTTCCCTCGGCTCCCCTGCCCGGCCTGGAGCTACGGGTGCGCCCAGCTAGAGTTTAGGGCC-ACCTGGGGACGTGCAAGGGGCG--------------CTGGAGCGAGGCGGGGGC--------TGGGGCGGGGCGTGGGTGCTT--CACCCGCGGGGGACGC-AGAGCTTAGGCGAAAGCGGT---GCAGGCATCTCTCTAATCGCCGGCCGCTATTAAAAATAAAACCGCGACCCGTCGCCATGACGACCACAACAACAGCGGCCGCGCGAGGGAGG-GAAAACTTGTGCAGCCGCGCGACAGCCGCCTTCTGGGGAGACTCGGGGCACG---------GCGCAC--------CCGGCGTGGGACTGCGACCCCCCTGCCCG---GCCCCGCCACATTCT--CCGCCGGATCCCC----GGAAGAAACAAGGAGACGTGGACCCC----CACAGGC-TTTTTGG---------GGGGATTGGGCGCTGAAACCGCAGGGCTGACTTAACCAAGAGGTCACCGACTTGGATAAAAAACCCAC---GCCCGCGCGGC-CCCCCCTCCCCG-------GCCTTCGTT--------------------TCCATTCAAACTCCCAGC-GTCCTCATTGCAGCCCCTGGGGAGGGGG-ACGGAGGGACGAGGTGGGTTTCAGGTGCTCGGCC-CAGGAGGGGACGGTGCGACCCGGGCCCCGCCGGCGGGTTT---TGCGCGCG---GAGGCTGCAGCACCTGCCCCGCCCGCCCTGCCGCGATCCTTGCAGAT-GGGGGCGGTCACATGCTTCTTTCTGGCCAGGAATCGAGTTTCACTTCCAGCCGCTATTAGTCGGTTCACACAGTTCACTGCAAACATTTGATAATGAGGCTAAATATACTCCCGCGTC--------GGAGGAGGCGT------------GGGCGTCC-CCGCCCAGGC----------------CCGGG--AGACAGAGG----CGCGGACCCCGGGACGGAG------------------------------CCTGGCTTTGTGCGGGAGGGAGAcgcgc-cccgcgcgccgcccccgAAACATTGCGCA-CCCATGCTGCGGCGCGCGTC s mm5.chr5 136400859 1398 + 149219885 ----------------GCCCCAGCCCTAACACCTCG-------------------------GGATGCTCAGGAGATAAGAGGACACCCTCTCTTG------------GCCTAAA--GAGGGAGTATGGAAAACGTTGAGAAGCGCCCCACCTCGAGGTCTTCGAAAGCCCAGGCCTTGTCCGTACTGGTGAAACTTTATGCTGCTCTGAAGAGG------------ATGACTTCTGG-TGGCGACT-----------GCCAGGAC----CACTCTAGACCTGAGTCGAGTTCCTCACCGTTTTATCCCGATTGTTCTGCGCGGCCTGTCCCG-----CCAAGCCCTCGGCCTTCTCACAGGCAGAGAGCACCAAAGGACACCTTTTTGCGGTTCGACGACCCGGTGTGACGGTGGATGTGAGAATCCAGGAAGAAGA-TCCGGTTGCATTGCT---GGGATGCCGCGCCTGTCCGGCCACCACCTCCGCATGGAGGCTGCGGGTTCCTGGGGACCCC----------------ACCTAGTTCGGT-GCTTCTCT---CTCCCTTTACTCTCTTGGCGCAGCAGGGACGCCCAGCTGGAAATCAAAGCCGGGCGGGAGGGATTCTGAAGACG--------------CTAGGGGACATCAGGGACCAGAA---TGAGGCTAGGCCTGGATTCAT--CGCCC----GGGACGCGGGAGCCACGGGGAGCTGGGC---GCAGGCACTGCTCTAATCGCCGACCGCTATTAAAAATAAAACCGCGACCCGTCGTCATAGCGACCGCAACAACAGCGGCCGCGCGAGGGTGGTAAGAGCTTGTGCAGCCCGGCGCCAGCCGC---CTGAGGGGACT-GGGGCACGGGCCCTAAAGCTTACAAGGTACTCTGGTGTGAGACAACGACCCCTACCCCCA---CCCCCA-----------CAGCCGACCCCC-------------------------GACCCC----CACTGTTCCTCCTGGTTCTCGCTAGACTCTTGGTCTCTGAAAAC-TGGAACTGGCTAAGTCATGAGGTCAAGAGCC----TAAAGGACCCGC-CGGCTCAAACTAC-CCCCCACCCCCAC-CCTATGCCTCGGCT--------------------TCCCTTGGGACCCGTGACAGTCCTCATTTTAGCCTCTGGAGAAGGGG--TTGAGTGAGGGGGTGAGGTTCAGGTGTCAGGCCTCCAAAGAACACCAAGAGA-CCAAGCCGAGCTGGAGGGGTTGCATGCGCTC----GAGGCCACCGCACCTGTCCCGCCCGCGCCTCCGTGATCCTTTCTGGT-GGGAGAGATCACGTGCTTCCTTCTGGCTGGGATTCGAGTTTCACTTCCAGCCGCTATTAGGCGGTTCACTCGGTTCACTGCAAACATTTGATAATGAGGCTAAATATACTTTAGAGTC--------GGAGGAGGTGT------------GGGCGGCTGCTGCCCTAGCCTGTAGGTGCGTCGCTCCAGG--CTCCATGGGGCATCCCCGCCCCAGCAGCTGAGA---------------------ACAATCCCCCAAGTCGGATTCGAGAGAAAGACCCGCACCCACCCATTCCCCCCAAAA-----TCCAGTCCTAACTAGGA---GCATC s rn3.chr12 30467913 1415 - 46649226 TTCCTTAGGCCTGCGGGCCCCGTCGCC-ACGCCCCTGCCCTAGCA-----------CCTCGGGATGCTCTGGAGATACAGAGG------------CACCCTCTCTTGGCCTAAA--GAGGGAGTCTGGAAAACGTCGAGAAGTTCCTCACCTCGAGGTCTTAGAAAGCCCAGGCCTTGTCCGTTCTGGTGAAACTTTGTGCTGCTCTGCAGAGGGAGATTCACCGGATGGCTTCTGG-CGGCGACT-----------ACCAGGAC----CACGCTGGACCTGAGTCGAGTTCCTCACCGTTTTATCCCGATTGTTCTACGCGTCCTGTCCTG-----CCAAGCCCTT------CTCAGAAGCAGAGAGGACCAGAGGACACCTCTTTGCGGTTCGACGACCCGA------------TGTGAAAATCCAGGAAGAAGA-TCGGGTTGCATTGCTGAGGGGATGCCGCGCCCGTCCGGCCACCACCTCCGCATGGAGGCTGCGGGTTCCTGGGGACCCC----------------GCCTAGTTCGGT-GCTTTTCT---CTCCCCTTACTCTCTTGGCGCAGCAGGGGCGCCCAGCTGGAAATCAAAGAGGGGCGGGAGGAATTCTGAAGATG--------------CGAAGGGACATCAGGGACCAGAA---TGAAGCTAGGCCTGGATGCAT-CCGCCC----GGGACACGGGAGCCACAGGGAGCTGGGC---GCAGGCACCGTTCTAATCGCCGACCGCTATTAAAAATAAAACCGCGACCCGTCGTCATAGCGACCACAACAACAGCGGCCGCGCGAGGGTGGTAAGAGCTTGTGCAGCCGAGCGCCAGCTGC---CTAAGGGGACT-GGGGCATGGGCCCTTAAGCTTAC-CGGTACTCTGATGTGAGACAATGACCCCTAACCCCT---CCACC------------CCCCC---CCCCC----CACACACACACACA---------CCA----TGCTGTTCCTCCAGGTTCTTAGAAGATTCCTGGTCTCTGAAAAC-TGGGACTGGCTAAGTCATGTGGTCAAAAGCC----TAAAGGACCCGC-CGGCTCAGGCTACACACACACACACACACCCATGCCTCGGCT--------------------TCCCTTGGGACCCGCGACTGTCCTCATTTTAGCCTCTAGAGAAGGGG--TTGTGTGA-------------GGGTGTCAGGCCTCCAAAGAACACCAAGAGA-CCAAGCCGAGCTGGCGGGGGT---TGCATGCGCTTGAGGCCACCGCACCTGTCCCGCCCGCGCCTCGGTGATCCCTTCTGGT-AGGAGAAATCACGTGCTTTCTCCTGGCTGGGATTCGAGTTTCACTTCCAGCCGCTATTAGGCGGTTCACTCGGTTCACTGCAAACATTTGATAATGAGGCTAAATATACTTTAGAGTC--------GGAGGAGGTGT------------GGGTGGCTGCTGCCCTAGC----------------CTG-------TAGATG----CGTCGCTCCAGGCTCTGTGGGGCATCCCCGCCCCAGTAGCTGAAAACCCCCAAGCCGGGTGCGAGAGAAAGACCCTCACCCAC------CCCCTAAAA-----TCCAGTCCCAACTAGAAAGAGCATC s canFam1.chrUn 1760244 1420 + 91062872 TTGC--------CCAGGCTGCAGCCCC-ACACAACCACCGTCACC---AAGTCACCTCTCCGGCTGTTCAGGGTGATGAGGGT----------------------------GAAGCAGGGAAAACTTGGGGACATTTAGAAGCATGTG----------------AGGGCCCGTCCTTGTCCATCCATATGGAACCTTCAGTGGCTCCAGAGAGA-GACACCGCTGGCAGGTTTGGGGAAGGCAGCTAAACATGCACCACCAAGAAGACCCAGGCTGGAC----GATGCGGTCTGAGCCACCGTCTCCCCA--CTGGATTGCATCACGGCAGGTGGATCCAG--CCTCCGAGTCCTCTCGGGCAGGAGGGACCTGAGGACACTCCTTTGGGGATAAAGGA-TGGGTTTGATCGTGGGTACAGGAATGAAGGAGGAAAGTTTGCCTTGTATTTC----GGCCTGGGGTT---------CTTACAGCT------------------------GCAATCCC-TCCACATCTGAGCAGGCCTAGGTGGGTGGCTTCCCT---CT------------GGGGCACTTCAGGGATGCCCAGCTGGAGTTTGCGGCC-AGCAGGGGA-GTTAAGGGGGCGCCTTTGCCGGGAGTCTCAGGCCAGCTGGAGGGTGGAAATCAAGGGCGAGGCCTGGGTGCATCCCGCCC---CCGGACTGGAGAGCTGGGGGGGGGGGGGCGGTGCCGGTGTCCCTCTAATCGCTGGCGGCTATTAAAAATAAAACCTCGGTGAGTCGTCATAGCGACCA-GACAACAGCGGCGGCTGGAGGGTGGCAAAAA---------CCGCACCACGGGCGCCTCTGGGGGGGACTCGGGACAAA---------GTGCAG-GCTTTGGCTGCAGTGGGGCAAGGACCCCCAGCCCCACATGCCCCACCCTTCCCTGACCTCCCCCCCCCCAAAAAAAAAACACTGGCAGAAATAGGCTCAGGAGCCCAGTTTCC--------------GAGAATTGGACACGAAGACAGAAGAAGTGACTTGACCAAGAGGTCATCAACTTGG-AAGAGAACCCACGCGTCTCGG------CTCCCTCCCCCA-------GCCCTGGTTCCTCTTGACACCCTGCCCAGCCCGTTCAGGTTCCAAGC-AGCCTCCTTTTAGTCCCTGGAAAGGGGAGGCTGGGTGAGGAGGTGGGCTTGGGATGCTCACCCCGGAGAGGAGACCGTAAGTCCAGAGGCCA---------------GGCACGTG---AGGGCTACTGCACCTGCCCAGCCCGCCGGTCGGCGATCCTTGCTGATCCGGCGTGGTCACGTGCTTCTTTCTAGCCAGGATT-GAGTTTCACTTCCAGCCGCTATTAGGCGGTTCACACGGTTCATTGCAAATATTTGATAATGAGGCTAAATATACATTGGAATCGGTCGCGTGGGCGCGGTGTTCCCGGCTCTGCGGGCATCC-CCGCCCAGGC----------------CCCAGCCAGGCACAGA----C-----CCCCAGGCCGGCG------------------------------CCCAGCTTTGTGGGGGAGGGAGGCCCGC-CCCGCATGCTGCCCCTGGGCCATT-CCAACCCAAGGCCCCAGCACTATCC a score=2761.0 s hg17.chr7_random 697578 10 + 778964 TGGGAGTCCG s panTro1.chr6_random 657244 10 - 67355074 TGGGAGTCCG s mm5.chr5 136402257 10 + 149219885 TTAGGGACTG s rn3.chr12 30469328 10 - 46649226 TTAAGGACTG s canFam1.chrUn 1761664 10 + 91062872 ACGGAGGCCG s danRer1.chrNA 173529917 10 - 390413307 TGTGGATCCT a score=4386.0 s hg17.chr7_random 697588 5 + 778964 TGGGC s panTro1.chr6_random 657254 5 - 67355074 TGGGC s mm5.chr5 136402267 5 + 149219885 TGGGC s rn3.chr12 30469338 5 - 46649226 TGGGC s danRer1.chrNA 173529927 5 - 390413307 TGGGT a score=-239.0 s hg17.chr7_random 697588 17 + 778964 TGGGCGCCCCGAGGTGA s danRer1.chrNA 173529927 16 - 390413307 TGGGTAGCTTGTTGGG- a score=-1314.0 s hg17.chr7_random 697593 12 + 778964 GCCCCGAGGTGA s mm5.chr5 136402272 11 + 149219885 G-CCTGAGGTCA s rn3.chr12 30469343 11 - 46649226 -GCTTGAGGACA s danRer1.chrNA 173529932 11 - 390413307 AGCTTGTTGGG- a score=16058.0 s hg17.chr7_random 697605 93 + 778964 GCCCG-GGGCCCCTGGCGGAAGCA-GCGGGGAGCTCCCGG------------CGGGTGCGGGGAGGT-GCTGG------TGGGAAGCAA--GGTGCACCTGGCGG---CCTGGGATGTC s mm5.chr5 136402283 99 + 149219885 GCTGGAGGGTCCCTGGAGGAAGTAGGCGGTAAGCAGCCGG-------------GAGCTTAGAAAGGT-GGGGA------GAGGAACCAGACAGTGCACCTGGCGGTGACCAGAGATGTC s rn3.chr12 30469354 98 - 46649226 GCTGGAGGGTCCCTGGAGGAAGTAGGCGGCCAGCAGCTGG-------------GAGCTTGGAAAGGT-GGGGA------AGGGAACTAGAAAGTGCACCTGGCGGTG-ACAGGGATGTC s canFam1.chrUn 1761674 98 + 91062872 GCCAGAGGGCCCCTGGCGGAAGGA-GGGGGCGGCGGGGGG--------ATATCCAGGGTGGGGAGGT-GCTGG------CAGGAGGTGAA-GGTGCACCTGGCAG----CCGGGATGTC s danRer1.chrNA 173529943 112 - 390413307 GTCAG-GGGCCCCTAGTTGGAGCA-TCAGGGGGCACCCTGTGGGCTACACTGCAAGTCCAGGGACATCGGTGGACCCCTGGGTAGCTTG--CGTGGGTCTGACGC---CCTTAGATGGA a score=9419.0 s hg17.chr7_random 697698 150 + 778964 CGGTCG-CCCCCGGAGCCGGTGCATCC---GGCCT----------CTCCCGGCGCGCCCCGACGTGCCCGCGGGCTCATAATTACCGT----GAGTCAGGTGCCCCAAATAGGCCGAGCG--AGGGGGGCCGTCGC------------GCAGCAGG----GGCGGGTGGCCGGACGTCTGCCCGGG s mm5.chr5 136402382 152 + 149219885 CGGTCG-CCCCCAGAACAGATGCTTCC---GTCCTGTCTCCAGTGCCCCCGGCACAGTGCGACATATCCTCCCGCCCATAATTAAAGT------GTCAAGTGTTTCAAATAGCTCAAGAG--AGGGAG-----TGC------------GCAGCTGG----GGTGACCAGGTAG-CATCTAACCCTT s canFam1.chrUn 1761772 159 + 91062872 CGGTCGCCCCCCAGAGCTGGTGCTCCC---AGGCTATCTCGGGCGTCTCCGGCGCGCCCCGACGTGCCTGCAGGCCCATAATTAAAGT----GAGTCAGGTGCTCCGAATAGGTGGAGAG--AGGGGC-----TGCCC---------TGCAGCTGG----GGTGACTGGTTGGGCGTCTGCCCCTC s danRer1.chrNA 173530055 151 - 390413307 ------------GGGCCAGGGGCACCCTGGGGCCTATA-----------CTGCAAGTCCAGGCACATCGGTGGACCCCTGGGTAGCTTGCTGGGGTCAGAGGCGCC---TAGGTGGAGGACCAGGGGG-----CACCCTGGGGCCTATACAGCAAGTCCAGGGAGAGAGGTGGACCCCTGGG---- a score=1603.0 s hg17.chr7_random 697848 29 + 778964 ACTGGTTGCCTCCCGCCCCTCCCCAAGAC s mm5.chr5 136402534 24 + 149219885 GTTGGTACCCTCTCA-----ACCCAAGAC s canFam1.chrUn 1761931 29 + 91062872 GCTGCTCGCCTCCGGGCTCTGCCTGTGAC a score=12862.0 s hg17.chr7_random 697877 489 + 778964 CCTGGCACC-CAGGGAGGGCGGGAAAGGCCTT-GGCCATTCCTCTGGGTAGGGGACTGGAGAGGGG------------AAGAAAC--TTTCGCCGAGTCCAGCGC---TGCCCCCTCATACCCATCCCCACCCAGGCTGCGTGTCCGGGGCCCCTCCGGGGCTTGGCACCAGCAG------GCACGCAGCGATCGCCGTCGTTGTTATTTAGTAGTAGTAGTAACGGCTGACATTTA--------------------------------------CAGCGACGTCGATGGCGCCAGGTGCCAAGCTCTTT--CCTTGTATAATTTCAT------------------------------GGACACTCACGCATCAACTCTAAGCGAA---GACTTGGA------------------------GCGGGGCTCAGCACCCCAG-----GGGTACCT------CTG--CAACCTCGGTAAATATAGACTATCCTCAATTCGCAGG-GGCATTTGTACGTGGGGTGTACAGGCAGG-AACAGGAAAGACGCTGTGGCCACCCAGGAGTAG-----------GGGCGGCA------GCCAACACCCCCTGGATCCCCAGTTCCAAGGTGCAGGGAGGGGGGCAGAGGCC----- s panTro1.chr6_random 657539 484 - 67355074 CCTGGCACC-CAGG-AGGGCGGGAAAGGCCT--GGCCATTCCTCTGGGTAGGGCACTGGAGAG---------------AAGAAAC--TTTCGCCGAGCCCAGCGC---TGCCTCCTCATACCCATCCCCACACAATCTGCGTGTCCGGGGCCCCTCCGTGGCTTGGCACCAGCAG------GCACGCAGCGATCGCCGTCGTTGTTATTTAGTAGTAGCAGTAACGGCTGACATTTA--------------------------------------CAGCGACGTCAATGGCGCCAGGTGCCAAGCTCTTT--CCTTGTATAATTTCAT------------------------------GGACACTCACGCATCAACTCTAAGCGAA---GACTTGGA------------------------GCGGGGCTCAGCACCCCAG-----GGGTACCT------CTG--CAACCTCGGTAAATATAGACTATCCTCAATTCGCAGG-GGCATTTGTACGTGGGGTGTACAGGCAGG-AACAGGAAAGACGCTGTGGCCACCCAGGAGTAC-----------GGGTGGCA------GCCAACACCCCCTGGATCCCCAGTTCCAAGGCGCAGGGAGGGGGGCAGAGGCC----- s mm5.chr5 136402558 442 + 149219885 CCAGACTTTACAGAGAAGCTTTGAAAGGAGGGAGACCATCCAATTTGCTCATCATTTTAAACGTAA------------AGCACACCTTTTCACCAA---------------------AGACTCATCC-----------ACCTAGCTAGTGCCCTTCAACTGCTTGGAACT--CAATTATCCGTGCTCAATTATTGCAGCCATTGTTACT---CATCAGCTGCAAGGACCGATACTGA-------------------------------------------GCTCTGATA----CCGATGCCGGTCTTTTG--CCCTGTAAAAT-------------------------------------AATTTCAAACAGCCACCCTGAGGCAAAGGGACTTAGACCCCCTTCCCAATGATAGAGCAAGGTGAGACT--GGGTCCCAGGCACTGAGTGCCTCATCCCCTG--GGAGATCCAAGAATATGGAGTGGCCCAGGTT--------GCTTTTGTATTAGGCAAGTGTGTGAAGGCAATATAAATGG----GTAGC--TCCAGGACTGC-----------ACACCGCACCACTTGCCACACCCCCCTGGA------------------------------------------ s canFam1.chrUn 1761960 577 + 91062872 CCCAGAGC--CAGGGAGGAGTGGGAAGGGCACAG----------TAGGGGGCCAACTGTAGGGACATCTGCCTTTATTAAGCACC--TCGTATGGTGTGCAGCCTGCATGTCCCACTAAACCCACCT---CACCTCCTACCTG-CTGCTGCTCGCCTGGGCCCTGGCACCAGTGG------ATGTTCCCTTCTTGCCGT-GATGTTACTTCCCTGTGGGAGTCCTGACTCAcactcactgagctcctcagtccctgcgtgatttcatttcactcacagagacacggagg------agcggcaatctctcccacctctccccattttacagatggggcactccagaggccaagaagccaggccgtttgcccatagggccggagccaa---ggagtggc-----------aCACTCCAGGCAGGCAGCTCT---GATGGCAG-----GGGCTCCT------CTGCACAAGCTCTGTTAATACATCAGAGCAGAATTACTCAGGTGGCATTGGT-CCTGCAGCTCACAGCCAGG-AGCAGGAAGGATGCTGCAGC----CAGGGGCAGCAGAGCCCCCAGGGCTGGA------GGCCATGCACACTTGGTCCCTAGTCTCAACATACACAGGGCAATGAGGAGCACACCCG a score=6616.0 s hg17.chr7_random 698366 16 + 778964 AGTTCCCTCCGCTCTC s panTro1.chr6_random 658023 16 - 67355074 AGTTCCCTCCACTCTC s mm5.chr5 136403000 16 + 149219885 AGGTCTCCCTGCTCTT s rn3.chr12 30470174 16 - 46649226 AGGTCCTCCTGCTCTC s canFam1.chrUn 1762537 16 + 91062872 GGTCCTGGCTGGCCTC a score=19705.0 s hg17.chr7_random 698382 336 + 778964 TGCC-CCTTGACCTTGGCCTTGG---TGAGCTCTGTCCCTAG---ACTGCCCTGGGTGTCTGTTCCCTCATCTGAAAAG--CGTGAGGCCCACAGCCGTCACTGCACACAGCTGCCGT---CACTGCACACAGCTGCCTCCACTGTCGGGAAGCCTCCCTCCTGCCCACCTGCCC---------AGGAAAAGCTGCGCTAGCGTG--CCCTGG---------------------------GCAAGCGCCCTGCTGGCCACCTGCCTGC---ACCTGGGTTGGG---------GGTGGGG--------GGACCAGCTGAGCACCCAAATCCTGGCCTCTGCCCCCAG--CGCCAGAGCAGA-TTTCAGAACAAT--------TTGTAATGACGAAACCCCACGTTTCCCTTTATCTCT s panTro1.chr6_random 658039 311 - 67355074 TGCC-CCTTGACCTTGGC---------GAGCTCTGTCCCTAG---ACTGCCCTGGGTGTCTGTTCCCTCATCTGAAAAG--CGTGAGGCCGACAGCCGTCACTGCACACAGCTGCC----------------------TCCACTGTTGGGAAGCCTCCCTCCTGCCCACCTGCCC---------AGGAAAAGCTGCGCTAGTGTG--CCCTGG---------------------------GCAAGCGCACTGCTGGCCACCTGCCTGC---GCCTGGGTTGGG---------GGTGGGG--------GGACCAGCTGAGCCCCCAAATCCTGGCCTCTGCCCCCAG--CGCCAGAGCAGA-TTTCAGAACAAT--------TTGTAATGACGAAGCCCCACGTTTCCCTTTATCTCT s mm5.chr5 136403016 250 + 149219885 TGCT-GCTTAACTTTGGTCTTGT----GTGCTCTGTCCCTGG---CTTGCCCTGAAT-TCCGTTCCTTTATCTGGAAAA------------ATAACCA-AAGTGGAAGTCGGTGCTGC--------------------GCCCCTG-CAGGTGGTCTCTACC---CCCAGCAGTCC------------------------------------------------------------------CCAGCAACCCACTGGAC-CCTCTCTG------------TAAG---------GGTGGGG-----------CCATCTGGGCCCCAGGCTTCCAGGCTCTG---CCAG--AGCC-------A-TCCCAGAACAAT--------TTGTAGTGTTGAAACACCA-GTTTCCCTTTATCTCT s rn3.chr12 30470190 250 - 46649226 TGCT-GCTTGACTTTGGTCTTGG---TGGGATCTGTCCCTGG---CTAGCCCTGGAT-TCCGGTCCTTTATCTAGACAAATAACAAAAGTGGAAGCCAGCGCTTCACCCTGCAGGTGGT--CTCTACG----------CCCA--------------------------GCAGCTC------------------------------------------------------------------CCAGCAACCCACAGGAC-CCTCTCTG------------TAAG---------GGTGGGG-----------CCAGCTGGGCCCCAGGCATCCAGGCTCTG---CCAG--AGCC-------A-TCCCAGAACAAT--------TTGTAATGTTGAAACACCA-GTTTCCCTTTATCTCT s canFam1.chrUn 1762553 276 + 91062872 TGCC-CCTTGGCCTTGGCCTTGTTCATGTG-TCTGTGCTTAG---ACTGCCCC--ATCTCAGTTCTC---TCTGGTTAA--CGGGAA----TCAACCA---------------CCCTT--------------------ACCAGGGCCAGTGAGCCTC-----------CCTGCTCGC-------AGGAAAAGCAGA---------------------------------------------CACACACACAGCTG----CAGGACTGCAGTGCCCAGGCTGGGTCCCAGTGAAAGGGGG-----------CCCACCGGCCATCCAGACCCAGGCCTCTG--CCCAG--AGCCAGGACGGATTTTTAGGACCTT--------TTGTAATGACGAAACACCACATTTCCCTTTGTCTCT s danRer1.chrNA 166783015 381 - 390413307 TGCCTCCTTACCCTCCACCTAGG----GGCCTCTTACCCCAGGAAGCTACCCAGGGG-TCCAACTCTCTTCCTGGACTTGCAGTATAGGCCCCAGGGA---------------GCCCCTTGCCCTCCACCTAGGGGCCTCTGACACCAGCAAGCTTCCCAGGGGCCCACCTCTCTCCCTGGACTTGCAGTAGAGGCCCCAGGGTGCCCCCTGGCCCTCCACCAAGGGGCCTCTGACCCCAGCAAGCTACCCAGGGGTC-CACAACTCT---CCCTAGACTTGC---------AGTAGAGGCCCAAGGGTGCCACCTGGCCCTCCACCTAGGGGCCTCAGACCCCAGCAAGCTACCAAAGG-GTCCACAACTATCCCTTTACTTGCACTA--GAAGCCCCAGAGTGCCCCCTGGCCCT a score=93608.0 s hg17.chr7_random 698718 241 + 778964 GGGCAAGGCTTTCTTCGTCCTAGGCAATTAATCCAAAAGCAACACCAGCCGAGTGGGCTGGACTCCTTGAAGATCAAAACTGCCCAG-CGCAGGCATTAATTAAGTCATTATCTCA----------GGCCCCCAGCGACTAGGGATCAGGCCTTTCCAGTTCACACTCTCCAGAAAGGGAGATAA--CTGCCCCGCCAGCAGGGTGGGAAGGCTCTCTCTCCATGTTG-TTTTAACTC-CCTATTAAATCATTTTA s panTro1.chr6_random 658350 241 - 67355074 GGGCAAGGCTTTCTTCGTTCTAGGCAATTAATCCAAAAGCAACACCAGCCGAGTGGGCTGGACTCCTTGAAGATCAAAACTGCCCAG-CGCAGGCGTTAATTAAGTCATTATCTCA----------GGCCCCCAGCGACTAGGGATCAGGCCTTTCCAGTTCACACTCCCCAGAAAGGGAGATGA--CTGCCCCGCCAGCAGGGTGGGAAGCCTCTCTCTCCACGTCG-TTTTAACTC-CCTATTAAATCATTTTG s mm5.chr5 136403266 244 + 149219885 GGGCAAAGCTTTCTTGGTTCTGGGCAATTAACCCAAATGGAGCCTCAGCCATGTGGGCTCTAGTCCTTGAAGATCAAAAGTGCCGGGCCACAAGCCTTAATTATGTCATTATCTTGCCCCCCTTTTTACCCCCA--GGCTAAGGATCGGGCCTTTCCAGTTCAGGCTCCCCAGAAAACAAGATAAGTCTGTGCTG------GGGTGGGAGGGCAC---CTCCAGGCTGCTTTCCACTC-CCTAGTAAGTGTTTTTA s rn3.chr12 30470440 244 - 46649226 GGGCAAAGCTTTCTTGGTTCTGGGCAATTAACCCAAATGGAGCCTCAGCCATGTGGGCTCTGGTCCTTGAAGATCAAAAGTGCCCGGCCACAAGCTTTAATTATGTCATTATCTTGCCCCCCCTTCCCCCCCCA--GGCTAAGGATCGGGCCTTTCCAGTTCAGGCTCCCCAGAAAACAAGATAAGTCTGTGCTG------GGGTGGGAGGGCAC---CTCCAGGCTGCTTTCCACTC-CCTAGTAATTGTTTTTA s canFam1.chrUn 1762829 208 + 91062872 G---------------------GGCCACTGATCCCAGAACAATCTCAGC--------------GTCTTGAAGATCAGGGT--CCCAG-TGAGGGCGGTCA-CAGGTGGTTACTTCAGGCCGCCCC-AGGCCCCAGGGGCTAGGGATGGGGCCGTCCCAGTCCAGGCTCCCCAGGAGA-GTGATAA-----ACCTACCAACCGGCCCGGAAGGCAT--TCTCAATGTTGTTTTTTACTCAACTATTAAATGTTTTTA a score=45270.0 s hg17.chr7_random 698959 111 + 778964 TTTT-------AAATACACAAACAGAAATGAAGTTGAAAATAGCACAGGAGCCCACTATCACTGTGTGAACATTTTGTGAATGAAGACATGTAT----------------------GAAAGGATGTTTGGAGGCTTCAAG s panTro1.chr6_random 658591 116 - 67355074 TTTT--CTTTTAAATACACAAACAGAAATGAAGTTGAAAATAGCACAGGAGCCCACTATCATTGTGTGAACATTTTGTGAATGAAGACATGTAC----------------------GAAAGGATGTTTGGAGGCTTCAAG s mm5.chr5 136403510 123 + 149219885 TTTTCACTTTTAACTACACAAACAGAAAT----------------TACAAGTCCACAGTAGGCTGGCGAATATTTTGTGAATGAAGACACACACACACACACACGCACACACCCGTAAAGGAACGTGTAGTGGCTTT-GG s rn3.chr12 30470684 118 - 46649226 TTTTCACTTTTAAATACACAAATAGAAATTATGTTTAAAATAGCATAGGAGCCCACAATAGACCCGTGGATATTTTGCGAATAAAGACCCATGT----------------------AAAGGAAAGTGTGGTGGCTTTTGA s canFam1.chrUn 1763243 110 + 91062872 -------TTTTAAATACACAAACAGAAACAGGGTTTAAAATAGC-TCTGAGCCCACAATCATCTTGTGACTATTTTGTGCATGAAGATCTACGC----------------------TAAGGGACGCTTGGTGGCTTGAAG a score=0.0 s hg17.chr7_random 699070 20 + 778964 AAACGAAAGCCGAGAGTCTA a score=3403.0 s hg17.chr7_random 699070 13 + 778964 AAACGAAAGCCGA s panTro1.chr6_random 658707 13 - 67355074 GAACGAAAGCCGA s mm5.chr5 136403633 13 + 149219885 AGGGAAAAGCCTA s rn3.chr12 30470802 13 - 46649226 AAGGAAAGGCCCA a score=300.0 s hg17.chr7_random 699083 1 + 778964 G s panTro1.chr6_random 658720 1 - 67355074 G s mm5.chr5 136403646 1 + 149219885 G a score=564.0 s hg17.chr7_random 699084 6 + 778964 AGTCTA s panTro1.chr6_random 658721 6 - 67355074 AGTCTA a score=21182.0 s hg17.chr7_random 699090 158 + 778964 GCTAGACCAGAgccatccagcccaggagcga-tggccacgtgtggccgctggacacgagagacgtggccagtccaaactgtgcagtgcggtaagggcagaacacat---gccagctttcgaaggctt--------agtaaagaatgcaaaatttctcaattgggaatttt s panTro1.chr6_random 658727 158 - 67355074 GCTACACCAGAgccatccagcccaggagcga-tggccacgtgtggccgctggacacgagagacgtagccggtccaaactgcgcagtgcggtaagggcagaacacac---gccagctttcaaaggctt--------agtaaagaatgcaaaatttctcaattgggaatttt s canFam1.chrUn 1763353 163 + 91062872 GCCAGCCCTG-GAtgtctagtgcaggagccaccagccacctgtggccactgggcgtatgaaacatggctgctccccagggtgacgagctgaacaagcaaagcacacgtggccaa-----gagggcttcatataaaggaaaagactgcaaaatttctc-attattaatttt a score=12853.0 s hg17.chr7_random 699248 52 + 778964 tgtatgaatttcaggttgaaa--aaaacattttggatatatggtgttaaataaa s panTro1.chr6_random 658885 52 - 67355074 tgtatgaatttcaggttgaaa--aaaacattttggatatatagagttaaataaa s rn3.chr12 30471511 52 - 46649226 CGTTTGTACTATGGATTAGTG--ATAATATTTTGCAGGTAGGGAGTTAAATAAA s canFam1.chrUn 1763516 54 + 91062872 tatattaatgatatgttgaaatgacagcattttcaatgtattgagttaaataaa a score=3435.0 s hg17.chr7_random 699300 20 + 778964 ---catgattacaatgactttcg s panTro1.chr6_random 658937 20 - 67355074 ---catgattacagtgactttcg s canFam1.chrUn 1763570 23 + 91062872 ctatattactacaattaatttcg a score=66339.0 s hg17.chr7_random 699320 493 + 778964 cTGTCAGCCT--------------CCCGGAGGCTCATTTTGCTCCTCTGGGCCACAGCCAGCTCAGAGGGTTGCTCTAGGAaatatctacacgttcttgaagcacaggtttatgtgccaggcactgtactaagtgctggggacacggcgttaagaccaggccc--tcacggagccctcactctctgaggagg--aacaataagtcagagagcgc-gcgagtgcagcccttcaggcaaaggatttcaggcccaggtcaggaaggccttgtctgaggagtctgagaagaagtcaattgacaacagctagaacatctaggtcaggcactccaggccgacac-gacaaagcaggtgcaaaggccccagggcgggaaccagcgtggcttgttcacagaacaag------------------------------------------------gaggtagatcgcttgc-ccttgggaccaaaggaaggc-tctggattttattctaggggcagtggaagccgttggagggcctcaggcagGAACACAAGGTGTCGTGG--CAGAAAGGAAG s panTro1.chr6_random 658957 494 - 67355074 ccGTCAGCCT--------------CCCGGAGGCTCGTCTTGCTCCCCTGGGCCACAGCCAGCTCAGAGGGTTGCTCTAGGAAATATCTACACACTCTTGAAGCACAGGTTtatgtgccaggcactatactaagtgctggggacacggcgttaagaccaggccc--tcacggagccctcagtctctgaggagg--aacagtaaGTCAGAGAGCGCCGCGGGTGCAGCCCTTCAGGCAAAGGATTTCAGGCCCAggtcaggaaggccttgtctgaggagtctgagaagaagccaattgagaacagctagaacatctaggtcaggcactccaggccgacac-gacaaagcaggtgcaaaggccccagggcgggaaccagcgcggcttgttcacagaacaag------------------------------------------------gaggTAGATCGCTTGC-CTTTGGGACCAAAGGAAGGC-TCTGGATTTTATTCTAGGGGCAGTGGAAGCCGTTGGAGGGCCTCAGGCAGGAACACAAGGTGTCGTGG--CAGAAAGGAAG s canFam1.chrUn 1763813 537 + 91062872 cttccagcctcaactgctatgtgaccttgaagcaaattggcttctTCCAGGTAACGGCCAGCTCAGAGGGTTGATTTAAGGAATAGTCACTCACACATTCAGCAAATACTCATGTGCCAGGCACTCTGTGGAGTTGTAGGAACAGAAAGCCAAAACCTACCCCCACCCCGGAGCCCAGGGTACCTCAAGAAGCAAGCAATAGATAAGCATATAC-----------TATTtcaagtaacatatttctggggt-ggtcaatcaggcct----------atttgagcgggagacaattagc--catctagaaagtctagatccagcattctaggcagagacagccacagcatgtgcaaaggccctgaggcaggaactgccttggattgttcaaggaacaaggggcagggatggtgggagaaggtgggtgagcagagagaggtaggcagtggggcagatcacacacaccttgagac---agtaaggcatctagatttcattctgggggt-gtagaagtcactgaaaggctggggcaaggaacacagaatgtggcAGCACAGATAGGAAG a score=125229.0 s hg17.chr7_random 699813 1382 + 778964 AAGGggccgggcacggtggcccacacccgtcatcccagcactttgggagggaggccaaggcaggaggatcgcttcaatccaggagttcaagatcagcctgggcaacacagcaagaccccgtctctactaaaaccctaaaacttagccaggcttggtggcatgtgcctaaggtcccaggtcctcgggagactaaggcaggaggattgcttaagcccaagagtttgaggctgcagtgaactattatcacaccactgcactcagcctgggtgacagagtgactctgtctcaaaactaaataaataaa----caataaTTGTGTTATTCTGTCTCCATTTCTCGCATACTGAATTTAAGGTGGACTCAGCCAGCGGGTTCAGGCCCAGGGTCTGTCCTGCAGCTACAGTCAGGGTTGGTGGCTGCAGCTGTCATGGGGGAGCGGTGAGGTTGGGGGAACAGGGGGGCTGGCCTGCATCCCCCACTTTCAGGT-GGGCTCAACTCCGTCTCGTGGCCTATTGGGGGCCAgcatgggcttccttacagcatggaggcctccagggtcaagctgcctctgggatggcagagggctttgtgttcgtgctcccacgcccacagtggaggcaatacaccctttccagatctagcagtacaggtgcgcagcaccacacctctgtacgctctcagcctaagctgtccccagccctcctggcctctggaggaggggacgcagaAACTCCATCCCGGACAGAGGGAGAGCCAGTGTGTGCACAGGCAGCTTCTAACACTGCTTCGTGGTTTCACACGGCTCCCTCATGGAGAAGGGGCTGGAggaggacagggaggtgtgcagtcatctgggtgacatatgagggtggctgggcttccagatggctgcagtggagaccgtaagaagAGTGCACGAGGTAAGGCTTCCGAAACGCCCAGCAGGTTCCTGGCAGCTGCAGACAACTCAattcttagcacttgccaatagctggggtgtaaacactcccgccgtcgctatttcgggctaTGCTCCTTGCCTCCACTGGGTCTGGCTCTTAAAACAGCAAGAAAGCAACTCGGAAGCTGAGTCAGCCCCGTCTCTCCACCGTGCCCACAGATCCTTCCCTGTTCCAGAGCTCCCGTTGGCAGCCAGCTGGGCTTCTCAGGGGGCATCTCCAGTCCTGTGCAGTCAGAGAAAACCAGGGAAGCATCTTGATCTCACCTAGAAATTAaggccatcacatccaacacctgcattttacaggtgaggaggctgaCATTACAAGTAGTGGTGGTGGTGACATTTGAACCCAGACCCCTGTCCTCCGGGGCCTG---TTTCCCTGGGAGCTGCGGACTCTGCGTGGAGACACAGAAATAGAGAC s panTro1.chr6_random 659451 1387 - 67355074 AAGGggccgggcacagtggcccacacccatcatcgcagcactttgggagggaggccaaggcaggaggatcgcttcagcccaggagttcaagatcagcctgggcaacacagcaagaccccgtctttactaaaaccctaaaacttagccaggcttggtggcatgtgcctaaagtcccaggtcctcgggagactaaggcaggaggattgcttaagcccaagagtttgaggctgcagtgaactatgatcacaccactgcactcagcctgggtgacagagtgactctgtctcaaaactaaataaacaaaGGaacaataatcatgttattctgtctccatttctcgcatcctgaatttaaggtggactcagccagcgggttcaggctcagggtctgtcctgcagctacagtcagggttggtggctgcagctgtcatgggg-agtggtgaggttgggggaACAGGGGGGCTGGCCTGCATCCCCCACTTTCAGGTTGGGCTCAACTCCGTCTCGTGGCCTATTGGGGGCCAGCATGGGCTTCCTTACAGCATGGAGGCCTCCAGGGTCAAGCTGCCTCTGGGATGGCAGAGGGCTTTGTGTTCGTGCTCCCACGCCCACAGTGGAGGCAATACACCCTTTCCAGATCTAGCAGTACATGTACGCAGCACCACACCTCTGTACGCTCTCAGCCTAAGCTGTCCCCAGCCCTCCTGGCCTCTGGAGGAGGCGATGCAAAAACTTCATCCCGGACAGAGGGAGAGCCAGTGTGTGCACAGGCAGCTTCTAACACTGCTTCGTGGTTTCACACGGCTCCCTAATGGAGAAGGGGCTGGAGGAGGACAGGGAGGTGTGCAGTCGTCTGGGTGACATATGAGGGTGGCTGGGCTTCCAGATGGCTGCAGTGGAGACCGTAAGAAGAGTGCACGAGGTAAGGCTTCCGAAACACCCAGCAGGTTCGTGGCAGCTGCAGACAACTCAattcttagcacttgccaatagctggggtgtaaacattcccgccgtcgctatttcgggctaTGCTCCTTGCCTCCACTGGGTCTGGCTCTTAAAACAGCAAGAAAGCAACTCGGAAGCTGAGTCAGCCCCGTCTCCCCACCGTGCCCACAGATCCTTCCCTGTTCCAGAGCTCCTGTTGGCAGCCAGCTGGGCTTCTCAGGGGGCATCTCCAGTCCTGTGCAGTCAGAGAAAACCAAGGAAGCGTCTTGATCTCACCTAGAAATTAaggccatcacatccaacacctgcattttacaggtgaggaggctgaCATTATAAGTAGTGGTGGTGGTGACATTTGAACCCAGACCCCTGTTCTCTGGGGCCTGCTGTTTCCCTGGGAGCTGCGGACTCTGCGTGGAGACA--GAAATACAGAC a score=12555.0 s hg17.chr7_random 701195 68 + 778964 CCAGATGGCTCCCGTAGAAACAGAGTCACCCCCCAGGGCAGCTGGAAGGGAGTGGGAGAGGACAGGTC s panTro1.chr6_random 660838 68 - 67355074 CCAGATGGCTCCCATAGAAACAGAGTCACCCCCCAGGGCAGCTGGAAGGGAGTGGGCGAGGACAGGTC s mm5.chr8 5052579 68 - 128688707 CCAGCTAATTCTCCCAGGAAATGAATCACCTCCTAAAACAGCTGCAAGGGAGCCAGAGAGGCCAGGTC a score=18969.0 s hg17.chr7_random 701263 204 + 778964 CTCAAGGGcctctgctctccacttccctccccgcctcgccgtgtcctctcccttcctctcTCCAACCCCTGCAGGGGGAGGCCTGGCTGGGAAGAGACGTTTTCTGAGTAGATGTTTTGGCTGGGCAGACTGAGCTTTGAGAAGCAGCCAGGCCGAGCGGGGCTAGGGAGTGAGGGCATTGGGGAGCCTGAACTTTAGTGACCA s panTro1.chr6_random 660906 204 - 67355074 CTCAATGGcctctgctctccacttccctccccgcctcgccgtgtcctctcccttcctctcTCCAACCCCTGCAGGGGGAGGCCTGGCTAGGAAGAGACGCTTTCTGAGTAGATGTTTTGGCTGGGCAGACTGAGCTTTGAGAAGCAGCCAGGCCGAGCAGGGCTAGGGAGTGAGGGCGTTGGGGAGCCTGAACTTTAGTGACCA a score=70442.0 s hg17.chr7_random 701467 625 + 778964 CTGCC--CCTCCCAGGCCAAAGCCGCAAA---------CCCCTCCCAT---CCCCAAGGGCTTCA-GACTCAAGGCCCAAGTTCCTGCATGTTGGATGTGAATTCCGAGTTCCAAGGTGGGGCAGGCGTGGGCCTGAGTCATCCGGCAGGTCACTGGGGTCAC---------CCGGTTAAAGCCCAG-GCCAACCCCAGAGCGCTTCCCCTGGGCGCTGCCCACAGCCTCTGTTCCTCTCGTGACCGTGGATGGT-TGGGAGCAGCCTGTGGTCCCTCAT-TCCATCCGGTTTTGAGGGCCTCACCGCTGTCTAAAGGTGCAGGTTAGACATCGG---GAGA---GGCGAAGGAGCCAGGCCAAGCCCCCGCGCCCCTGACCTTCCTCGGCCTCTGCTGAGGGAAGAGGATGAGACGCCGGCCCT-----------GCCCC-----ATGGAAAAGACCCC--AAATCGGGGTGACCAGCACCTCCCTTGAGCAGAAGCACAAATCTGACCTTCACCAGCAGGGCTGAGGTGGAGGGGACCCGAGC--TCATGGGGCAGAGAAAG--GAAGTGGCCTGTCGCGGCCAGAG-AGAGGGGCAGCCAGAAAGCCACATGCATGTATGCATGGGAAGCACAGAAACTTCTAGAACAAA-GAAAGTATGTGGGTGGGAGGGGGAGGAG s panTro1.chr6_random 661110 634 - 67355074 CTGCC--CCTCCCAGGCCAAAGCCGCAAA---------CCCCTCCCAT---CCCCAAGGGCTTCA-GACTCAAGGCCCAAGTTCCTGCATGTTGGATGTGAATTCCGAGTTCCAAGGTGGGGCAGGGGTGGGCCTGAGTCATCCGGCAGGTCACTGGGGTCACTGGGGTCACCCGGTTAAAGCCCAG-GCCAACCCCAGAGTGCTTCCCCTGGGCGCTGCCCACAGCCTCTGTTCCTCTCGTGACCGTGGATGGT-TGGGAGCAGCCTGTGGTCCCTCAT-TCCATCCGGTTTTGAGGGCCTCACCGCTGTCAAAAGGTGCAGGTTAGACATCGG---GAGA---GGCGAAGGAGCCAGGCCAAGCCCCCGCGCCCCTGACCTTCCTCGGCCTCTGCTGAGGGAAGAGGATGAGACGCCGGCCCT-----------GCCCC-----ATGGAAAAGACCCC--AAATCGGGGTGACCAGCACCTCCCTTGAGCAGAAGCACAAATCTGACCTTCACCAGCAGGGCTGAGGCGGAGGGGACCCGAGC--TCATGGGGCAGAGAAAG--GAAGTGGCCTGTCGAGGCCAGAG-AGAGGGGCAGCCAGAAAGCCACATGCATGTATGCATGGGAAGCACAGAAACTTCTAGAACAAA-GAAAGTATGTGGGTGGGAGGGGGAGGAG s canFam1.chrUn 1764355 578 + 91062872 CTGCCAGCCTCGAAGGTCAGAACAGAAAATCCCCTATTCCCCTCCCCTGCCCCCTGAGGTCTACAGGACTCGTGG-CCACATTCCTGAGTTGAGGGTATGAAT------TTCCAGGATGGGGC---------------------------------TGGTCAC---------CCAGTTTGAACCCAGAGCCACCCCCACACCTCCTACCC-------------CAGTCCCCCTTGGGTCTGTGACCGGGGATGGCATGGGAAAGGCCTACAGTGCCCCTTGGCCATTAGACAGACAGGACACAGCCCTGGCCC--TGGCAGAGGTCAGATGTCAGTCTGGGACCGGGACATGGGGACAGGCAGGCCTGCCACGCTTCC------------------CAAAGGGAAGGCAGTGAGG-GCTTGCCCTCCAGAGACACGGCCCCGGACGATGGAAGAGCCTCTCGAGGTCGGAGGGGCTCACAGCTCCCT--GATGGGAGCACAGATCAGACCAGAATCGTGGGGTCTACAGT---GGGGACCTCACTCACCATGGGGAGGGGAGATCCGAAGGAGCCGGT-GAGGCCAGAGCCGAGGGGC---------------TGAAGATGTGTGTGGGAAGCACAGAGGCTTCTGGAAGGAACCAGAGCCTGGGCTTGTATGAGGAAGAAG a score=29139.0 s hg17.chr7_random 702092 315 + 778964 GAAGGTTAAGCATACTGTACttttatttattcatttgagacagggtatctctctgtcacccaggctggaatgcaggggcacgatctcagctcactgcaatgcccacctcccaggttcaagcgattctcccacctcaacctcccgagtagctgggactacaggagggtgccaccacgcctggctaatttttgtatttttagtagaaacaaggttttgccatgttggccaggctggccttgaactcctggcctcaagtgatctgcctgtcttggcctcctaaagtgctgggattacaggcgtgagccaccacAAGGC s panTro1.chr6_random 661744 315 - 67355074 GAAGATTAAGCATATTGTACttttatttattcatttgagacagggtatctctctgtcacccaggctggaatgcaggggcacgatctcagctcactgcaatgcccacctcccaggttcaagccattctcccaccccaacctcccgagtagctgggactacaggagggtgccaccacacctggctaatttttgtatttttagtagaaacaaggctttgccatgttggccaggctggtcttgaactcctggcctcaagtgatctgcctgtcttggcctcctaaagtgctgggattacaggcgtgagccaccacAAGGC a score=49029.0 s hg17.chr7_random 702407 428 + 778964 CAACCATATCTTAGAGCCACAATAATCAGAACAGTGTGGCACCCATGTGACCAGAGACCCCAGAA----AAGGCTCTGTTGTAAATGAAGAATTTTAAAAGACATTGAAAGGATTGTGGATTAAATGCAGTTGAAGCTGTTCT-AAAAAAAAAAAAATCTGATGAAATCCTCATTTTACCCCACACTAACT-----TCAGATGtattaaaaattaagtttatatatatatattaaaaGGTTCAGGGATA-----AACTTGTACCACGtgaagcaaggataggcaca---catcccctgccacattcctgccaaagatgtttagccctgatcggacctcaaggaaacaaggagaca-acccagactgagacacattccacttaacacctggcctgacctgcaaaaacatcattgccatgagaaaagcaccagagggcgaccgttctag s panTro1.chr6_random 662059 429 - 67355074 CAACCATATCTTAGAGCCACAATAATCAGAACAGTGTGGCACCCATGTGACCAGAGACCCCAGAA----AAGGCTCTGTTGTAGATGAAGAATTTTAAAAGACATTGAAAGGATTGTGGATTAAATGCAGTTGAAGCTGTTCTAAAAAAAAAAAAAATCTGATGAAATCCTCATTTTACCCCACACTAACT-----TCAGATGtattaaaaattaagtttatatatatatattaaaaGGTTCAGGGATA-----AACTTGTACCACGtgaagcaaggataggcaca---catcccctgccacgttcctgccaaagatgtttagccctgatcggacctcaaggaaacaaggagaca-acccagactgagatacattccacttaacacctggcctgacctgcaaaaacatcattgccatgagaaaagcaccagagggcgaccgttctag s canFam1.chrUn 1764933 372 + 91062872 CAAACAGGTCATCGAGCTACAATAGTCAG-ATAGCTCGGCTCTCGCGTGACAAACGCATCGGGAACCACAAGCCTGTTTATTCAATAAGACAGTTTAGAA----------------------------AATTG-----------------------ACCTGATGAAATCCACTTTACCGCCAACACTAAATCCATGTCAGACGGATCAAAAA------------ATGGCTAAAGAAACGTTCAGAACAAACGGGAATGTGTGCGTCTTGCTGCCAG---AAGCTCACAGCATCACCTGCCGCACTCCTGCCAGCG-TGTCTTGTCTGGCTCAG-CCTCGAGGAAGCACAGGGACACATCTGGAAGGCGAGGCAATCCA-TGAACACCTCCTCTGATCT--CAGAACGTCATTTTCGTG-GAGAAGCATCCGAGG--GGCTGTTCCGG a score=6440.0 s hg17.chr7_random 702835 68 + 778964 actaacaggaacttaaaagacctgacaactcaatgccatgttccattcttgatggactcccacattca s panTro1.chr6_random 662488 68 - 67355074 actaacaggaacttaaaagacctgacaactcaatgccatgttccattcttgatggactccCACATTCA a score=5198.0 s hg17.chr7_random 702991 161 + 778964 tgatggtgtgatggtggtgcaggaggacctccttgttcttgggtgatgccatggcagttggggtaaagtgtcatgatgtttgcagcttattttcaaatggttggga--ggggaatatagatgatggacagacaaatgatgaa----------TAGATAGATGATTgatggagg s canFam1.chrUn 1765368 168 + 91062872 TGATGCTGCCCTGGGGGCGCAGGAAAACCCCCTGTATGTCCAGAGGTGCCGTGGAACGTGGGGTGAACTGGCATGACTTCTGCAGCTTATTCTT-AGTGGTTGGGGTTGGGGAATGGAAATGAT----AGATGAATGACAGAGATTGGCTGTCAGACCGATGATGGCTAGAGG a score=2896.0 s hg17.chr7_random 703267 36 + 778964 gatgggtagatgatggatggatgaatagaaagatgg s panTro1.chr6_random 662874 36 - 67355074 GATGGATAGATGGTGAATGGATGAATAGAAAGATGA a score=46227.0 s hg17.chr7_random 703313 628 + 778964 agataatggatggatagatga-----------tggatgatggatggatagatgatgaatggatgaatggatacatggtagatgaatggacgcata----aatgaatggagggattacagatggataggtgatgacggaatagatgatggacagatgggtagatgatggatggatgatggatgaatagacagatgatggatggatggataatggatggatggatacatgatg----gagagattgatagatgatggatgggtggatgatggatggacagacacatgatggatgaatggatggatagacaatggagggatggatacatgatggatagatgggtggatgaatggatagaagatggattgatggatatagatacatgatggatggatggataggtgataatgaatagacagatgatggatggatggataggtgatacatgggtagatgggtggagggattgatagatgatggatggatagatgatggatggatagatggacagaagatgaatggatatatgatggatggatggatggatgagtagatggatggatggatggtagagtgatagatataggtagataaatatagagatagatatagatagaaatgagagataaaatggggacaacaggtgaat s panTro1.chr6_random 662923 588 - 67355074 AGATAAAGGAAGGAAAGACGAGGGATGATGTTtggatgacggatggatagatgatgaatggatg----gatacatggtagatgaatggacgcatagatgaatgaatggagggattatagatggataggtgATGACGGAATAGATgatggacagatgggtagatg---gatggatgatggatgaatagacagatgatggatggatggataatggatggatggatacatgatgaatggagagatagatagatgatggatgggtggatgatggatggacagacacatgatggatgaatggatggatagacaatggagggatggatacatgatggatagatgggtggatgaatggatagaagatggattgatggatatagatacatgatggatggatggat-------------------------------------aggtgatacatgggtagatggatggagggattgatagatgatggatggatagatgatggatagatagatg-----------aatggacagatgatggatggatggatggatgagtagatggatggaCGG----TAGAGTGATAGACataggtagataaatatagagatagatatagatagaaatgagagataaaatggggacaacaggtgaat a score=37446.0 s hg17.chr7_random 703941 229 + 778964 gaggtgaggggtatacagctgttcattgtattattcttatgacttttctgtaaaattgaag-ttttcaaaacaaaaagtGGTGGAAAAAA--GCTAATTCCTATTTCCTAGTTTTCCCATAGTTTATCAAACTTCTAAAATGGAGAGAACGTTCAGAACTTAGAAAGCACAGAGCAAACCCCAAATAAAAGACTAGAAGGAGTGTTACGTTTCATGTTTTATTATT---TTTAAA s panTro1.chr6_random 663511 232 - 67355074 gaggtgaggggtatacagctgttcattgtattattcttatgacttttctgtaaaattgaag-ttttcaaaacaaaaagtGGTGAAAAAAA--GCTAATTCCTATTTCCTAGTTTTCCCATAGTTTATCAAACTTCTAAAATGGAGAGAACGTTCAGAACTTAGAAGGCACAGAGGAAACCCCAAATAAAAGACTAGAAGGAGTGTTATGTTTCATGTTTTATTATTATTTTTAAA s canFam1.chrUn 1765581 222 + 91062872 GAGAGGAAGGGGTCACATCCATTCATGGCACCATTCTTATGACTTTCCCATAAGGCTGAAATTTTTCAGAATATAAAGTTATGAAAAAAAATGCCAATTCCTAGTCTCTAATTTTCCCATCATTTATCAAACTTCTAGAAGGCAGAGAAT-CTAAGAGCTCCAGAGG-ACAAAACAAATCACAAATCAAAGAGCAGCAGGAGAGCCACA----GTGT----TTACT---TTTAAA a score=30653.0 s hg17.chr7_random 704170 330 + 778964 AGGCTCTCCAAACCtttttattttatttt-----ttgagatggagtttcactcttgttgcccaggctggagtgcagtggcacgatctcggctcactgcaacctccacttcccaggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggtgcccgccgccacacctggctaattttgtatttttagtagagatgggctttctccatgttggtcaggctggtctggaactcctgacctcaggtgacccgcctgcctcggcctcccaaagtgctgggattacaggtgtgagccaccgcacacggccTTTCATGTTTTAAGTTT s panTro1.chr6_random 663743 335 - 67355074 AGGCTCTCCAAACCtttttattttattttattttttgagatggagtttcactcttgttgcccaggctggagtgcagtggcacgatctcggctcactgcaacctccacttcccaggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggtgcccgccgccacacctagctaattttgtatttttagtagagatgggctttctccatgttggtcaggctggtctggaactcctgacctcaggtgacccgcccgcctcggcctcccaaagtgctgggattacaggtgtgggccaccgcacacggccTTTCATGTTTTAAGTTT a score=91815.0 s hg17.chr7_random 704500 858 + 778964 AAAAAAAAGACCGTTGGGTTTGACAGTGTAGACAATCGAAAGATCTCGTAAAAAATTTAAAATCTAAACAAATGGAATCCTTTAGTTTTGCGTTACACTTAATTTCCAGTGTCCCTGTGTTCTTA--TCTGCATGTAC-------------AGAACAA-CATATTTGCCACATTTTTAAAGCACATTTATATATCGGGG-TCTCTGCTCATG-------CTCAGAAAACCACTGA-TGATGTGCAGGAGAATCACAGCTGGGAAGA-AACACAGGAGGACCTTTTCCTTCATCACCAACCAT------------GCCCCCCCCC---AGCCTCCACCCCCGCCCCGAGGGAGAGGCCTGGGGAGCACAGGCTACTTTCTGAGCTTCCGGAAGTTGCAG--GTCAACCTGGCGGCAATTTGGCACCAGGAGCCACCAGTGTGGCCGCGGCCCCTGACCCTGTAATCCCACATC-GGGCACCCAGCCTAAGAAAACGACACGTTTGCTTCAAGGGCTCAGAGCACCAGGATTTAAAACAGCAACTAGGAACAACCTAAGATCCTAGGTGCTCCGAGATCAAGATGCCAGAAAATaaatcaaatcaaatcaaatcCCAGGCGCAAACGGCCCTCGTGTTCTTACCCCTCCTCTCGCTGTTGGAAATCGCGGCTCCATTTATGGGTGGACAGAAAGACAGCCTCCTAGCACCGGGCTTATAGCTTCCACGCCCTGTTCTTCTCCAAGCCCTCGCCCGGCGCTGCCCGGTCCTCAGGGCGCGACACGACGCTGCCCGCTGAGGCGTCAGAGCTTGGGGCTGCTTGTCACGTTTCCTCCACACCCAGCGTCCGGATGCTCTGTGATGTGTTAATGTTACTTCTCTAAGAATCACTGTTGCTTCTGGGG s panTro1.chr6_random 664078 874 - 67355074 AAAAAAAAGACCGTTGGGTTTGACAGTGTAGACAATCGAAAGATCTCGTAAAAAATTTAAAATCTAAACAAATGGAATCCTTTAGTTTTGCGTTACACTTAATTTCCAGTGTCCCTGTGTTCTTA--TCTGCATGTAC-------------AGAACAA-TATATTTGCCACATTTTTAAAGCACATTTATCTATCGGGGGTCTCTGCTCATG-------CTCAGAAAACCACTGA-TGATGTGCAGGAGAATCACAGCTGGGAAGA-AACACAGGAGGGCCTTTTCCTTCATCACCAACCATCACCCCCCCCCAGCCTCCCCCCGCCAGCCTCCACCCCCGCCCCGAGGGAGAGGCCTGGGGAGCACAGGCTACTTTCTGAGCTTCCGGAAGTTGCAG--GTCAACCTGGCGGCAATTTGGCACCAGGAGCCACCAGTGTGGCCGCGGCCCCTGACCCTGTAATCCCACATT-GGGCACACAGCCTAAGAAAACGACACGTTTGCTTCAAGGGCTCAGAGCACCAGGATTTAAAACAGCAACTAGGAACAACCTAAGATCCTAGGTGCTCCGAGATCAAGATGCCAGAAAATaaatcaaatcaaatcaaatcCCAGGCGTAAACGGCCCTCGTGTTCTTACCCCTCCTCTCGCTGTTGGAAATCGCGGCTCCATTTATGGGTGGACAGAAAGACAGCCTCCTAGCACCGGACTTATAGCTTCCACGCCCTGTTCTTCTCCAAGCCCTCGCCCGGCGCTGCCCGGTCCTCAGTGCGCGACACGACGCTGCCCGCTGAGGCGTCAGAGCTTAGGGCTGCTTGTCACGTTTCCTCCACACCCAGGGTCCGGATGCTCTGGAATGTGTTAATGGTACTTCTCTAAAAAACACTGTTGCTTCTGGGG s canFam1.chrUn 1765803 697 + 91062872 AAACAAACAAACATCCAATTTGACAGTAAAAAAATTCAAAACATAGGGTAGAAATTTAAAAACCGGAACAGATGGAATCCTTTACTGTGG----GCCCTGAAGAGTCAGGGCTCCCCTGTTCCTGGCTCCCCGCGTACTTTCCATCCACCTAGAACAAGTGCATTAGCCAAAGGTTAAAAG-ACATTTATCTGCTGGG--TCTCTGCTCCGGTTCTCTCCTCGGAAAACCACAGACTGA--CGCAG-------ACAGGGGGAATGAGGACGCGG-------------------ACCAGCGGG------------GACTGCACTT----GGCTGCGCCTCC----------AGAGGACTCGGGGGGGCAGG---------GGGGCCAGGGAGGGGGCTGCTGCGATGCTGACAGCCACTTGGCACCCTCAGCGGTGGACGTGGCTGTGA--CCTGACCCTGCAGCCCCACGTCTGGGCACCTGGCCTAAGAAAATGGCCCGGCCGCAG-AGTGGCCTAGTGCGCGAGG-----------------------------GGCCCTGGGGG---CGGGACTCACACCACAAACACTGG---AAACAACCTAAAATCCCAGGTGTGAGCAGGCCTTGTTTTCCTGGCCCTC------TGGTTGGAAACTGTGTCCCCTCCTG-GGGCGGTGGCAAAGACAGTTTCC-----------------------CGTGCTGT--------------------GGAAAGGGCCA-----------GAGATGGGGCTCTACCCACGGCGGGGGCAGGGCGTGGAGCCGCTGGTCA-GCTTCCTTC-CACCCCACATCCAGGTGGTCTGTGATG----------------------------------TCTGAGG a score=11137.0 s hg17.chr7_random 705358 160 + 778964 tttttttgtttctg-tttttgttttgagacgcagtct---cgctctgtcacccaggctggagtgcagtggtgcaatctcggctcactgcaacctctacctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgtccgccac s panTro1.chr6_random 664952 163 - 67355074 tttttttgtttctgttttttgttttgaaatggaaccttcac-ctctgtcccccaagctggagtgcagtggtgcaatctcggctcactgcaacctctgcctccctggtacaagcaattctcatgcctcagcttcccaagtagctgggactacaggcacccgccac a score=2086.0 s hg17.chr7_random 705670 148 + 778964 AATGCTGTTGCTTCTGTTTTATAAGAGGCACTGGGGCATGAAAAGCTA---------------TATCTCTGATGGGGCTGTGTGCCTGGCGGGTCCTGCCTGGCTCTGGCCCCCAGGTGCCCTCTGAACGGACAGTGCTG---CCTGGGGACGCCCCTGGCCACAC s canFam1.chrUn 1766500 154 + 91062872 AATTCAGACACTTCTATTTTAGAAGAGACACCCAGGCATCCGAAGCGAACAGGGGCCTCGGGTTTCCTCTGAATCAGCAGTGGCCCAGGTGACCCTCCTCCTGC----GTCTCCAGG-------GAGGCAGGCAGTGCTGCTCCCTTGGGTC-CCCTCGTCCACAC a score=4276.0 s hg17.chr7_random 707594 47 + 778964 AGCAGGACAGCAGACTGACACTCAGCCTCACACTCACTGCCCCAGAC s panTro1.chr6_random 667607 47 - 67355074 AGCAGGACAGCAGACTGATACCCAGCCTCACACTCACTGCCCCAGAC a score=150216.0 s hg17.chr7_random 707641 1289 + 778964 TCAGAGCTGCGAAGCTGCATCTCACTGGCTAAGTCTGGGCTCGTGCTGCCCCAGGTCAGTGACCATGGTTGGGGACAATGCTCTGCTTGGCCAGATCTGGACACAGCACCCAGGACCCCTAGGGTCACCAATGAG-----AAATGGCCCCCGGCCCTCCAGGCAGAAGAGAACACCACGCTCCTCCCTTCCCAGGCCTGCCTGAGGGGACTTCCCTGTCCTCACCCAACTGCAGCTCCCGCACTGTCCTGGCTGGGCGACCTGTGACCCCTGGCAACTGTAACCCCAGACATAGCTGGCGAGCACTTAGCTGGAGCACTGAGGCGTGGGGTGGGAGAGACCTGGGGCTCAAACCTCCCCTCTGAGTGACCTCGGCA-CACTCTTCCTCCTTGGGGTCTCACCCCCTGGCCATTGGGCGAGGATTCGGG--TGAGCAGTGGGTGAGCTCTGAGGTCCCTCCCTGTCTG-GACCACTGGAGAAGCCATTTTGGCCTGGGGCTGTTTTTCTGGACAGGAGAGAACAAAATACATCAGATAATCTTATCCTCGCCTCGCTGTGACCC----AAGGTGCACCTCTGGG----------------CTGTGGCACAGACTCCCCTCTGGTGGG----ATA-GCATCCCCCTGCCCCT------------------------------GCGTGGAAATGGCAGAAACCAGGCTTCCCCCAGCACCCGGGACGTCCAGTCCCGCGGGGTGCCAGACGTGGGTGGAGGGAAGGAGGGAGGTGGCAgc--tccgccgctggc------tgctgtgcaccttggatgggttgcttt-cgtctctgagccccggtggcct-aaaggtgataaggcgcaatgcagcccacgtggctgctagtgagggctgtttacagg-aacacc-gcaacaggctcagcacagacatggtgcgtagCCCAGGGCAGCTGGCACTC-GTCCTGGC-------CTGGG---GGAGAGGGCTGTGTGTGATGAGGGGTGCACAGACCcactgcctggcatacagcaggtgcccagtgaaCAGGAGCAATTCTGCC-----------------CCACCCTGGTGGGACAGGAGCCCG-----------------GTCAGTGCC-CTGCTCTTCACAGCCTCGTCTGTTGGGCTGGACAGCAGGCAGCCCCCTGAGCCGCAGGTGCCCGGTGATCCC----ACCTAGCACA------AGCCAGACCTTCCAAGCCCTCAGCCGCAGCCAGGACCACAGCGCACCCCTCATCCTCGAAATCCAAAATAATCCACACAG-----------CAAACTGTGGTGTCCAGAATGATCCCCAGATCTGCTGACTGTAAACTTCTGGGTGAGATTACCAGAGAGGGCCCGTCACTCTGTCTCCCCACTCATCTCGCTATCTCTGTAT s panTro1.chr6_random 667654 1289 - 67355074 TCAGAGCTGcaaagctgcatctcactggctaagtctgggctcgtgctgccccaagtcagtgaccatggttggggacaatgctctgcttggccagatctggacacagcacccaggacccctagggTCACCAGTGAG-----AAATGGCCCCCGGCCGTCCAGGCAGAAGAGAACACCATGCCCCTCCCTTCCCAGGCCTGCCTGAGGGGACTTCCCTGTCCTCACCCAACTGCAGCTCCCGCACTGTCCTGGCTGGGCGACCCGTGACCCCTGGCAACTGTAACCCCAGACATAGCTGGCGAGCACTTAGCTGGAGCACTGGGGCGTGGGGTGGGAGAGACCTGGGGCTCAAACCTCCCCTCTGAGTGACCTCGGCA-CACTCTTCCTCCTTGGGGTCTCGCCCCCTGGCCATTGGGCGAGGATTCTGG--TGAGCAGTGGGTGAGCTCTGAGGTCCCTCCCTGTCTG-GACCACTGGAGAAGCCATTTTGGCCTGGGGCTGTTTTTCTGGACAGGAGAGAGCAAAATACATCAGATAACCTTATCCTCGCCTCGCTGTGACCC----AAGGTGCACCTCTGGG----------------CTGTGGCACAGACTCCCCTCTGGGGGG----ATA-GCATCCCCCTGCCCCT------------------------------GCGTGGAAATGGCAGAAACCAGGCTTCCCCCAGCACCCGCGACGTCCAGTCCCGTGGGGTGCCAGACGTGGGTGGAGGGAAGGAGGGAGGTGGCAGC--TCCGCCGCTGGC------TGCTGTGCACCTCGGATGGGTTGCTTT-CGTCTCTGAGCCCCGGTGGCCT-AAAGGTGATAAGGCGCAACGCAGCCCACGTGGCTGCTAGTGAGGGTTGTTCACAGG-AACACC-ACAACAGGCTCAGCACAGACATGGTGCATAGCCCAGGGCAGCTGGCACTC-GTCCTGGC-------CTGGG---GGAGAGGGCTGTGTGTGATGAGGGGTGCACAGACCCACTGCCTGGCATACAGCAGGTGCCCAGTGAACAGGAGCAATTCTGCC-----------------CCACCCCGGTGGGACAGGAGCCCG-----------------GTCAGTGCC-CTGCTCTTCACAGCCTCGTCTGTTGGGCTGGACAGCAGGCAGCCCCCTGAGCCGCAGGTGCCTGGTGATCCC----ACCTAGCACA------AGCCAGACCTTCCAAGCCCTCAGCTGCAGCCAGGACCACAGCGCACCCCTCACCCTCGAAATCCAAAATAATCCACACAG-----------CAAACTGTGGTGTCCAAAATGATCCCCAGATCTGCTGACTGTAAACTTCTGGGTGAGATTACCAGAGAGGGCCTGTCACTCTGTCTCCCCACTCATCTCGCTATCTCTGTAT s canFam1.chrUn 1766674 1125 + 91062872 TCAGAGTTTCCAGGCTGCATCTCA-TGGGTTGCTCCGGGATGCTGATGGGCCAGG----------GGAAGGGGTGCAATGCTCCAAAGGGCCTTG-CTGGGCCCCAAGTGCAGGCCTTCTTGGGCAGCCTGTGGGCCTCCAAATGTCCCCCGACCCT------------GA------------------CCCTGGCCTGCCCTGGAAGGCT----------------------------GCTCCGTCCTGGCCGGGCAACCCCTGACCCCTG---------------------------------TTGGCTGGGGCACCCGGGAG-GAGGCCCTGGAG-CTCAGGGCTCACACCTCTGCTCTGAGTGACCCCGACAGTGTCCTTCCTCCCCGG--------------------GGATGAGGGCTGTGGGCCCAGCAGAGGGGGAGCTTGACAACCCCTCCCTGTCTGTGACTGCTGGAGAAGCTATTTTCATCTGTGGCTGTTTTTCTCGACAGGAGAGAGCAAAATACGTCAGATAATCTTATCCTTGTCCTGCTATGACCCTCAGGAGATGGGGGGGTGGGCGGGGGCTGGCAGCCTCTGCAGCCCAAGCATCCCTCTGGTGAGCAGTATATGGGTCCCCCAGCTCCCTGAGCCCCTACTATGCGCCTGCCCATGGGGGTGTCGGAAGGGCAggaaagag------ctcag-gcccgag-------gccctgaggggagccagcccaggtctga---------------ggctgccttccaccaccagctggctatgctggccacctgtggcaagtggcttcacctctctgagcccctgtggcctcaaaggtggtggg-------------------------agtaacaacaG----CAGGTAACACTGGGGACGTGCTCAGCACAGAGCCAG----------AGGGCAGCCGAAATTCTGCCCTGATTCATTAGCGGGGTATGGAGCGTGCTGTGTGTGTAGa--------------cactgcctggcgtgcagcaggcgctcagt-------aGTGATTCCACCTGCAGCTCAGAGCTCCTCCACCCCTGGGCCACAGGCGCCTGTGTGGGGCAGCCTTGGCATCGTAGCCGCTGCTCATCACAGGGCCACCCCCCGGGGT-------------CCCTCTGTGCCCCACGCTACCAGC--TCCCATTTACCTAGGATAGTGCTGAGCTCAGCCCTTCAAACCTCCGTGTCCAGCTATGATCACAGTGAGCCCAGCGCCCAGAGAATCCAAAATAAAGCCACCAGCCCCTGAAACCCAAACAGTGGTATACACGGGGAT------------------------------------------------------------------------------TATTTCTGGAT a score=9450.0 s hg17.chr7_random 708930 119 + 778964 TGCTGTTTCTGTTCTGGTCTCTCCCCCCGGtctctgtctccctctctctccatctctccccatgtctctgtctctctccatctctccatttctctctctctcgctcgctcactctcccc s panTro1.chr6_random 668943 109 - 67355074 TGCTGTTTCTGTTCTGGTCTCTCTCCCCGGtctctgtctccctctctctccatctctccccatgtctctgtctctctcca----------tctctctctcgcgctcgctcactctcccc a score=4577.0 s hg17.chr7_random 709049 40 + 778964 ctTGCTTTGATAGTGTGATTTAAGACACTTCCATTCAACA s panTro1.chr6_random 669052 35 - 67355074 ctTGCTTTGATAGTGTGATTTAAGACAC-----TTCAACA s canFam1.chrUn 1767799 36 + 91062872 CCTGCTTTGACACC----CATGAGACACATTCAATCAACA a score=13497.0 s hg17.chr7_random 709089 141 + 778964 GTATTTTAAGtttttgtagcaacaggatcttgctaagttgcccaagctggtctccaatttctggcctcaagctatcctcctgcctcagcctcccaaggtgctgggattacaggggtgagccactgcgcccggctGcattca s panTro1.chr6_random 669087 141 - 67355074 GTATTTTAAGtttttgtagcaacaggatcttgctaagttgcccaagctggtctccaatttctggcctcaagctatcctcctgcctcagcctcccaaggtgctgggattacaggggtgagccactgcgcccggctGcattca a score=66376.0 s hg17.chr7_random 709230 475 + 778964 acagtatttattttgcacgtactgtgtactctgtgtccaccccgttctagtcaggggacgcagcagggacacagtcccaccctcatgggactggacatctggaaggtgaggatgggtgacaaacacgtgaaCCAGGGGCTTAACCTGCCTGTTGGACAGTCTGGCTATTTCAGCT-GATGCGTTCAGCTCCAGAAAATAGAAACTCAGCCCAAAC--------ACAGTCAGGGATCTTACTGGGAAGCCCAGA-GGCGGGATTCAGGAGAGGTCTGATCAAGGGTCCGGCTCCACATCTTGG--------------TCCTCCTCTTGG-------------------GTTCCCTCATGGTGACAAGACGGCTGCCAGGAGCGGCTGGAGAGCCCTGGTTCTCGTCAGCAAGAAAGAGTGCGAACCA-CCCGTCTGCCTACCGGTAAGATCAATGAAGCTCTTTCT--CAGAACGCAGTCCTTGGCCAGGGGGCTGAGATGCCCACTCCTGAACTGCCATCC s panTro1.chr6_random 669228 476 - 67355074 acagtatttattttgcacgtactgtgtactctgtgtgcaccctgttctagtcaggggacacagcagggacacagtcccaccctcatgggactGGACATCTGGAAGGTGAGGATGGGTGACAAACACGTGAACCAGGGGCTTAACCTGCCTGTTGGACAGTCTGGCTATTTCAGCC-GATGCGTTCAGCTCCAGAAAATAGAAACTCAGCCCAAAC--------ACAGTCAGGGATCTTACTGAGAAGCCCAGA-GGCGGGATTCAGGAGAGGTCTGATCAAGGGTCCGGCTCCACATCTTGG--------------TCTTCCTCTTGG-------------------GTTCCCTCATGGTGACAAGACGGCTGCCAGGAGTGGCTGGAGAGCCCTGGTTCTCGTCAGCAAGAAAGAGTGTGAACCACCCCGTCTGCCTACCGGTAAGATCAATGAAGCTCTTTCT--CAGAACGCAGTCCTTGGCCAGGGGGCTGAGATGCCCACTCCTGAACTGCCATCC s canFam1.chrUn 1767835 454 + 91062872 ACAG----------ACACTGACCATGGAGACCGTGCC------------------GTGCGTAacag-----catccctgccctcatggggctgacctcccagaaggtgcag--gggtgacaaacacaggagcaaGGGGTTT-ACCTGCCTCCT-GATAGTC-------CTCGGCTGGATGTTTTCAGCTTCAGGGAA-GGAAACTCAGCCCAACCTGGCTTAAACGATGAGGGATCTTACGGGGAAGTACAGATGTCACGATTCAGGAGAGGTCTGATCAAGGATCCAGCTCTGTATGTTAGTGGTCTTAGTGGTCTTCTCCCCTTGACATCTTCCTTCAGCAGACCCCTCCCTCATGGTGACAAGAGGGCTGCCAGAAGCAGCTTGGGCTTCCTCGTTCACACTGAGCAGGAATGCTGTG------CCC--CTGGTTTCTCTCAAGACTGAAGAAGCTCCTTCTCACAGGATGCTCTCCTTGGCCA-------GAAATG-------GTGGCCTGCCATCC a score=1966.0 s hg17.chr7_random 709705 23 + 778964 GACCCATGGATCGCCTGTTGTGA s panTro1.chr6_random 669704 23 - 67355074 GACCCACGGATCGCCCGTTGTGA a score=1710.0 s hg17.chr7_random 709784 30 + 778964 GACATCACTGCAGCATTGCACACCTGCCCC s panTro1.chr6_random 669827 28 - 67355074 GACATCA-TGCAGCAT-GCACATCTGCCCC a score=809.0 s hg17.chr7_random 709814 52 + 778964 CGATGTGCCGCCTTCTCCTGTTTCAGGACCCCCAGCCCTGTGTTCTGGAGTC s panTro1.chr6_random 669855 46 - 67355074 -GATGTGCC-CCTTCTCCTGTA-CAG-ACCCCCAGCC-TGTGTTC-GGAGTC s canFam1.chrUn 1768289 44 + 91062872 --CTATGTC-CCATCCTCCACT-----CCCCCCATCGCCAAGatctcaaacc a score=29541.0 s hg17.chr7_random 709866 348 + 778964 AACCCCGGCTACTCCTTCCCGGGCTCCtcttttctttattgttttatcttgtgagacagggtcttgctctgttgcccaggctgcaatcacagctcactgcaatttccacttcccaggcgtaggtgatgctcccacctcagccccacgagtagctgggactacaggtgcaagccaccacacctggctaatttttgtatgttctgtaaagttagggtctcactgtgttgcccaggctggtcttgaattcctgggctcaagtgttcctcccgcctcggcctcccacagtggtgagacgccaggcgtgacccaccatgcctggccCGGCTCCTCCTCTTCACCCTGGAGGGT s panTro1.chr6_random 669901 341 - 67355074 AACCCCGG-TACTC-TTCCCGGGCTCCTCTTGt--ttatt--tttatctcgtgagacagggtcttgctctgt-gcccaggctgcaatcacagctcactgcaatttccacttcccaggcgtaggtgatgctcccacctcagccccacgagtagctgggactacaggtgcaagccaccacacctggctaatttttgtatgttctgtaaagttagggtctcactgtgttgcccaggctggtcttgaattcctgggctcaagtgatcctcccgcctcggcctctcacagtggtgagactccaggcgtgacccaccatgcctggccCAGCTCCTCCTCTTCACCCTGGAGGGT a score=36768.0 s hg17.chr7_random 710214 377 + 778964 CCAGAGCTCACTCTTCACCGTCTTCTCATGGGGGCAACACTGcctccgtcctgacaactggactcgggtccagctctgcccaacacctctgcatgggtgtctaa-agacaagctgatctcattatggcccaaacagagccccaaacccacagcgccccagcttcgtcccccaggcaacaatgacaccacctcccagccacccaggccagcaaggggcacccggcctg------cacctt----ccccctcacctggtgcctctggtctggggg-aacccctgttgactcaa-cctctgagcctctcccaaacctaaccaggtagaacctccacctggccccacctcttctccagggataactgtggcctcccttcagccttctccctgga s panTro1.chr6_random 670242 376 - 67355074 CCAGAGCTCACTCTTCACCGTCTTCTCATGGGGGCAACGCTGCCTCTGTCCTGACAACTGGACTCGGGTCCACCTCTGCCCAACACCTCTGCATGGGTGTCTAA-AGACAAGCTGATCTCATTATGGCCCAAACAGAGCCCCAAACCCACAGC--CCCAGCTTCGTCCCCCAGGCAACAATGACACCACCTCCTAGCCACCCAGGCCAGCAAGGGGCACCCGGCCTG------CACCTT----CCCCCTCACCTGGTGCCTCTGGTCTGGGGGGAACCCCTGTTGACTCAA-CCTCTGAGCCTCTCCCAAACCTAACCAGGTAGAACCTCCACCTGGCCCCACCTCTTCTCCAGGGATAACTGTGGCCTCCCTTCAGCCTTCTCCCTGGA s canFam1.chrUn 1768333 277 + 91062872 ccagagctccctcctga------------------------gccccag------------------------gctccactcagcacatctgcctgggtgtccaacacacaagccaaccttaacacg----------------aaact--------gcaagctctgaccctggggataccat-------ccttccagctgctcagacca------------tggcctgggagccaaccctgaggccctctgagcatacatcccatgtgtcatgg-aattattggtgactcagccctcaaaatgcctgggaaacctgactgg------tgcccacccaatgtcgcctcc----------tggccctagccccc-----accttctttcggga a score=39304.0 s hg17.chr7_random 710591 462 + 778964 tcccctacggtcctagagtgagccttaattttaaaacctaagccagCCggctgggtgcggtggctcacccctgtaatcccagtactttgggaggtcgaggcgggcagatcacctgaggttgggagttcgagaccagcctgatcaacatggagaaaccacgtctctactaaaaatacaaaattagccgggcgtggtggtgcatgcctgtaatcccacctacttgggaggctgaggcagaagaatcgcttgaacccaggagggggaggttgcagtgagccaagatcgcgccactgcactccagcctgggcaatgagagtgaaactgtctcaaaaaaaaaaaaaaaaaaaaaCCCTAAGCCAGCCAGGTCACAGCTCTGCT---CCGTGGATACCCCAAAAGCCCAAGGAAAAGGGAAATCCACCATAAGACGGTAAAAGGAACCCCTGGCAGGAGAGGTGAGGGGCT s panTro1.chr6_random 670618 456 - 67355074 TCCCCTATGGTCCTACAGGGAGCCTTAATTTTAAAACCTAAGCCAGCCggctgggcgcggtggctcatccctgtaatcccagcactttgggaggtcgaggcgggcggatcac--aaggttgggagttcgagaccagcctgatcaacatggagaaaccatgtctctactaaaaatacaaaattagccgggcatggtgatgcatgcctgtaatcccacttacttgggaggctgaggcaggagaattgcttgaacccaggagggggaggttgcagtgagccaagatcgcgccactgcactccagcctgggcaacaagagtgaaactttctcaaaaaaaaaaaaaa-------CCCTAAGCCAGCCAGGTCACAGCTCTGCTGCTCCGTGGATACCCCAAAAGCCCAAGGAAAAGGGAAATCCACCGTAAGACGGTAAAAGGAACCCCTGGCAGGAGAGGTGAGGGGCT a score=74953.0 s hg17.chr7_random 711053 570 + 778964 TGGCTCCTGAAGACACCGCCCTTGCCAAGTCTGGGGCCTTCCCCTGAGTTACAGAGCACTTCCCTGGCAGATCACAGGTTAAAAATAATTCTGTCCTCCCTGCCCGGGCTCTTGTTGGAGGAGCTGATGGGGGCAGAACCCAGACCCACCTTCCATTAGCAAACCTCAGGGGCTAGGTCTGGCCTGGGCCCAAGCCAGCCCCACCTGG-----TCCCTAGGGAGCTCCTAGGAGGCAACACCGCCGGCTCTTGCTTTTCAAAGCCATTGTGGTCTTCTGGCCCGTCGGCGAGGCCGTGTGTGAAACCCAGCAGGAGGGGTCTCCAGGAACCACAGGGTGTCACCCAGAGTGTCCAACAGAGACCCCAGAATTCCAGAGAGGCCGTGAGGTACCACGGATGAGGGTCACTCAGC-CCTGACGGCCCG-GGGTCCAGA-----------GTCTCCTTCTAGCCTGTTCC-TGGATGA------CAGCCACGCTTACCCTCAGTATCCCAGAAATGATAACATTTGCTGCCAtggttctctattgctgcctaataaaccacctccaaatgcagagtctcaacccaacagtgaagacct s panTro1.chr6_random 671074 570 - 67355074 TGGCTCCTGAAGGCACCGCCCTTGCCAAGTCTGGGGCCTTCCCCTGAGTTACAGAGCACTTCCCTGGCAGATCACAGGTTATAAATAATTCTGTCCTCCCCGCCCAGGCTCTTGTTGGAGGAGCTGATGGGGGCAGAACCCAGACCCACTTTCCATTAGCAAACCTCAGGGGCTAGGTCTGGCCTGGGCCCAAGCCAGCCCCGCCTGG-----TCCCTAGGGAGCTCCTAGGAGGCAACACCGCCGGCTCTTGCTTTTCAAAGCCATTGCGGTCTTCTGGCCCATCAGCCAGGCCCTGTGTGAAACCCAGCAGGAGGGGTCTCCAGGAACCACAGGGTGTCACCCAGAGTGTCCAACAGAGACCCCAGAATTCCAGAGAGGCCGTGAGGTACCACGGATGAGGGTCACTCAGC-CCTGACGGCCCG-GGGTCCAGA-----------GTCTCCTTCTAGCCTGTTCC-TGGATGA------CAACCACGCTTATCCTCAGTATCCCAGAAATGATAACATTTGTTGCCAtggttctctactgctgcctaacaaaccacctccaaatgcagagtctcaacccaacagtgaagacct s canFam1.chrUn 1768749 471 + 91062872 TGGCTCCTGCCGGCACCCCCATCACCAAGTCTTGGGTCCTCCCCTGAGTTACAGAGCATTGTCCAAGCAGATAACAGATTATAAATAATCCCTTCCTCCCCGTCCAGACTCCCGCTGGCAAAGCTGGTGTGGGCAGGAAGCAG---------CCA---------CTCAGGGTCTCGCCCAGGCCGGGGCCCA----GGGCCTACCTGGCACTTTCCCACGAGATCTGGGACTTGGGACCACCTCCAGCTCTCACCTTCCTAAGCAGCTG----------------------------GTGTGA-----------------CT----GGACCAGAGG----CCCCCTGAGTGTCTATCAAGGACCT----------GAGCGGCTGCAGGGT---CCgggtgagggcagctcagcacctg--gacacgcaggtccaaatccatgcttccgtctccttctagcatgttccgtgggtaagtcatggagccacactgggcctcagcttctgagcagtaaTAAC---------------------------------AAACCACTTCCAAACG-GGAGGTTAGAACCAGCACAGAGTGTGT a score=27825.0 s hg17.chr7_random 711623 305 + 778964 catgacaggcaccatggcccacgcctgtgatcccagcactttgggaggccgaggcaggagatcatttgagctcaggaggttgagtccagcttgggcaacacagacctcatttctacaaaaaattacaaagttagccaggcgtggtggtgcgtgcctatagtctcagctacttgggaggctgaggcgggaagatggcttgggccc-aggggttgaggctgcagtgagccgtgatcgcaccgttgtactccagcctgggcaacagagcgagaccctgcctcaaaaaccaaaaacaaaacaaattcatg s panTro1.chr6_random 671644 306 - 67355074 catgacaggcaccatggcccacgcctgtgatcccagcgctttgggaggccgaggcgggagatcatttgagcccaggaggttgagtccagcttgggcaacacagacctcatttctacaaaaaattacaaagttagccaggcgtggtggtgcgtgcctatagtctcagctacttgggaggctgaggcaggaagatggcttgggcccggggggttgaggctgcagtgagccgtgatcgcaccactgtactccagcctgggcaacagagcaagaccctgcctcaaaaaccaaaaacaaaacaaattcatg a score=15872.0 s hg17.chr7_random 711928 203 + 778964 acttcacggtgtctgtagttcaggaattcagaaacggcttccccgggatcctgtggaccaggCCGTGGTTGTTA---GGTGTCGGTTTCTCACCCTGCAgctgcttgagtgtcctcacaacatggcggctggcatcccggggagcaagaggcccaaacagcaaggccaaagc--------caccgtgtcttctctgaccactcctgggaagccc s panTro1.chr6_random 671950 200 - 67355074 acttcatggtgtctgtagttcaggaattcagaaacagcttccccgggatcctgtggaccaggCCGTGgttgttaggtggtgtcggtttctcaccctgcagctgcttgagtgtcctcacaacatggcggctggcatcccggggagcaagaggccc-aacagC-AGGCCAATG---------CACTGTGTC-TCTCTGA-CACTCCT-GGAAGCCC s canFam1.chrUn 1769220 161 + 91062872 ACCTCACTGCGTCTGAAGGCCAG------------------CTGGCGGTTCT-------AGGCCCTG-----TA---GTTTCC--TTGCTCAC------GCAGCTTGTGTGTCCTCACGGCCTGGCACCCCGCTTCCC-CAGAGCAGGT------GACATCCAGTCCAAGGCGTCCTCAAGGCCCTGTCCTCCTC---TACTTCC--AAAGCCT a score=946.0 s hg17.chr7_random 712131 271 + 778964 caccccagc-------acaggccctgtcaatgcaggaagggctatgggagggcacagacatggggaggtaggacctcgggcccacctggaggctggcagccacCCTTGACTTAATGCTGCAGT-GAGGATGAAATGAGCCAATGCCAGTGCCTGGCACATGGGGGAGTTTTCTCACCACTGGGCACCCCCAGCTTCTCCTCGGGAGACTTGCAG-----GGGCCTAAACTCATCCATATTCACTTCCAAGAAGTGG-GCTCCGTGAAGCCTTGCCGAGCCGGGGA s canFam1.chrUn 1769381 228 + 91062872 CCCCCTGGTAACTCAGACCGGCCACTTCCATGTGGGGA-------GGGAGGACCCA-------------AGGGCGTGAAGCCCA-----AAATCGG--GCTGCCCCTGACTCAAAGGTGGTTTCAAGGATTAAGTGAGCTCA-------------CACAGGGAAGAGCCCCCCGCCTGCAGG-----CTCAG-----GCTCGGGGCACCTCCAGGAACAGGCCCTGAGCCCCGCCAGACTCAGT---GGGAAGCGGAGCCCC----AGGCCCGCCCAGCCAGCCA a score=1062.0 s hg17.chr7_random 712402 22 + 778964 -AGCAGCGACGGAGGGTGCCTAG s rn3.chr2 26638336 22 + 258222147 -AGTTGAGAAGGGTGGGGCCTAG s canFam1.chrUn 1769609 23 + 91062872 GGCCGGTGCAGGGCCCTGCTTAG a score=2779.0 s hg17.chr7_random 712424 78 + 778964 GTGTGATGGAGGGTGCCTAGGTGTGATGGAGGGGGCCTGGGTGTGGTGGAGGGGGACCTTGTTCAGGGGCCAGGGGGC s rn3.chr2 26638358 78 + 258222147 GTGAGAAGGGCGTGGCCTAGGTGAGAAGGGTGGGGCCTAGGTGAGAAGGGGTGGGGCCTAGATGAGAAGGAGTGGGGC a score=1293.0 s hg17.chr7_random 713083 48 + 778964 ggagccggggtccctggaggagggcgcccctggtccagg-ggctgcaga s canFam1.chrUn 1769779 47 + 91062872 GAAGCCAGGCCCCCC--AGGGGCGCTTCCTTGGTCCAGAAGGCAGACga a score=19318.0 s hg17.chr7_random 713131 269 + 778964 ggaatctgaggcggcttccaggaggaggtggcatttgaatccagccttgaaagacag----cagcagctg----tccCAGGCCTGGAATTTCCTCTTCCCATGCAGCCAGGCCCCACCCCTCTTATCTGCCTCCTCGGGGAGCT-GGATCCCAGGGACCTTCCCGAGAAGGGCAGCCCAGCCTGGCCCCACCCCACCCCAAGGCCGCAGGCTGTGTCACCCGCCTGGAATGCA-----------------CTT---------------------------TCCAGTCCTCCCCTCC---------CTCCCCCATGCCAGCCCTTCACTTCC s mm5.chr5 136414533 262 + 149219885 GGGACCTGAGAAGGCTTCCAAGGAGAGGTGGCTTTT-------------AAGGTTCG----CTGTACCC------TCCAGGGCAGGAGTCTTCCC---CCATCTCACC---TCATACCATTCTC-TCCTCTTCCTCAGGGAAATCAGACGTCAGGAATCTTCC--AGAACAGCAGCTGAGTGGGTGCCCTCCCTGCCCTGGGGCCAC-TGCTGTATCACCAGTCTGGAATGCATTTTCAATTACCCTGTCCTC---------------------------TCCTGTCCTGCCCTCC---------CCACTAGAGGCCAGCTCATCATTTCC s canFam1.chrUn 1769826 311 + 91062872 ggaatctgcgaaggcttcaaggaggaggtggcacttgagccaagcctagaaggatgGCAGCCAGCAGCTGGGCTCCTCAGGCCAAGAATTTCCCT------TCCAGCCGTGCCCCACCCATCTTATCTGCCTCTCAGGGGAG---CGATCCCAGGGACCTTCCC-GGGAGGGCAGCTCAGCCGGCTCCCCTCCC-CGCCGCGGCAGC--GCTGAGTCATCAGTCTGGAATGCACTTTCAATTc-------ctccgccacccctccccctcctccgctgtccccagccccctcctccccatcctgtccccccAGGGCCAACCCATCACTTCC a score=3628.0 s hg17.chr7_random 713400 256 + 778964 TGACCCAG----------CCGGCCAGGCCAGCCCCCAGGCCTCAGAAAATCTGGGGGCCCCCCCGGG----CCTGTCACCCCAGA----AAGGTGGGGGGAAGGGGGCACC-CCCTAGACAGGAGGAAGGAGCTCCTGAGAG-TCTCACCTTACAACCT----CCCCATGGGGACAGCAAGCCCTCAGTGTCCCCTC---CTAGGCCCCCAAGGAAGCCAGACTTGCTGAGAGGAACACAACTCACACATCCCCCCAGGGCCCCCACTTCCTCACCAACCCAA s canFam1.chrUn 1770137 259 + 91062872 TGACCCGGGCACAGTGTTCCGGCCA---CGGGCCTGAGGATGGAGGATGGGTCAGGGACTCCCCAGGACTCCCCGTCACCCCGGAGGCCAGGGCAGGAAGGAGGAGGCGCCTTCCCAGCCTGGAGGAGCGGTTTCTTCAGGGACCTGCCCCCACACCGTCTGGCCCGGCGGGAAGTGCAGGCTCTCAGCATCCCCCTCAGCCAGGACCCAGCAAAGGTCAGGCCGG--------------ACCCAGA---CCCTCCAG----CCCACCTCCTGGGCACCTCAA a score=42374.0 s hg17.chr7_random 714093 488 + 778964 GGGGGCTCCCGTTTGGGGACAAGTGCCTCAGCTACGCCGGTGGAGCCTTGGTGAGGAACCCCTGTGCCCCCACTCACTGCGGGCAGAGGCACCACCTCTGGGGGCCGGTGTGAAGCCAGACTCCTAGCCAGCCCTGCAGCCTGTCCCAGGGGCCAGTAGAACCGGGAGGGGGCCGGG---------------------------------TGTGTAACTGCCTCCTGAGGCCGGCGAGTAGATTCCTGAGGCTCAGGGCGGTGCCCTCCTCTACCTGCCCACACACTCCAAGGGAGCTTCAGTCCCCACCTGCCAGCTGGAACAGGGGCTCCCTGAGGGCCCGAGTCCCCAACGCTAACACAGGAGGCACCAGGGAGCGTCTGCGGAATTAAACCAACACTCTGTGTGCACGTCACACGTTTAGCGGACACAGGCCCAGGCTCCCTACACTGGGGTCCCCGCCCCTGCTCTCCGGCGTTCCGAGCCTAGACGTGGAGGTGAACAGACACGTGGCCTCCTGC s panTro1.chr6_random 673495 519 - 67355074 GGGGGCTCCCGTTTGGGGACA-GTGCCTCAGCTACGCCGGTGGAGCCTTGGTGAGGAGCCCCTGTGCCCC-ACTCACTGCGGGCAGAGGCACCACCTCTGGGGGCCAATGTGAAGCCAGACTCCTAGCCAGCCCTGCAGCCCGTCCCAGGGGCCAGTAGAAccgggagggggccgggagggggccgggagggggccgggagggggccgggTGTGCAGCTGCCTCCTGAGGCCGGCGAGTAGATTCCTGGGGCTCAGGGCGGTGCCCTCCTCTACCTGCCCACACGCTCCAAGGGAGCTTCAGTCCCCACCTGCCTGCTGGAACAGGGGCTCCCTGAGGGCCCGAGTCCCCAACGCTGACGCAGGAGGCACCAGGGAGCGTCTGCGGAATTAAACCAACACTCTGTGTGCACGTCACACGTTTAGCCGACACAGGCCCAGGCCCCCTACACTGGGGTCCCCGCCCCTGCTGTCCTGTGTTCCGAGCCTAGACGTGGAGGTGAACAGGCACGTGGCCTCCTGC a score=6148.0 s hg17.chr7_random 714615 68 + 778964 ggggtggggtggggtgggTGGTGAGGGGGTGTGCAGGGCTGCCTGGATGCACTCGGCCT---AACGGCCCG s panTro1.chr6_random 674033 71 - 67355074 GGGGTGGGGTGGGGTGGGTGGTGAGGGGGTGTGCAGGGCTGCCTGGATGCACTCGGCCTCCTAACGGCCCG a score=26632.0 s hg17.chr7_random 714683 241 + 778964 GGAAGAGCCTGGGGCCTGAGAATTCCAGCCACCACCACCCCAGGGGTGCCGCCCACTGCTCACAGGGCCACCCACACCTCTAGCCACCTCATCGGGCCTCCAGGCGGCTGCCCTGTGTGGTGTGGGGGGACTCCCAGAGGGAGTGAGCCCGCCCTCCTAGGAGAAGCCTGGCCAGGTTCCAGTGGGGTGGTGGCCCGGCCCATAAACAGGAGGGGTTTATGGCCCAGTGACAGGCAAAACT s panTro1.chr6_random 674104 222 - 67355074 GGAAGAGCCTGGGGCCTGAGAATTCCAGCCACCGCCCCCCCAGGGGTGCCGCCCAC-------------------ACCTCTAGCCACCTCATCGGGCCTCCAGGCGGCTGCCCTGTGTGGTGTGGGGGGACTCCCAGAGGGAGTGAGCCCGCCCTCCTAGGAGGAGCCTGGCCAGGTTCCAGTGGGGTGGTGGCCCGGCCCGTAAACAGGAGGGGTTTATGGCCCAGTGACAGGCAAGACT s mm5.chr5 136416187 214 + 149219885 GGCAGCACCTGGAG-----GACCCTCAGTCATGGCCAGCTCACATGGCCTGTACACAGCTCCCCTTGGT------GCCCATCACTGCCTCATACTGCCTCCAAGT-----CCTCGTGT-CTTCCTAGGGCCTCCTAGGGAGCATGA---TATCCTCCCAGGGCAAACCTGGCTGGGCTCCAGT--GGTTAGGGCTCCACTCATAAAAA-----GCTTTATGGCCCTAGGGAAGGCAGAGCT a score=12023.0 s hg17.chr7_random 714924 134 + 778964 GGTGGGGCAAGCCCAGGCTAGATCCCAACCCTGAGCCAAGGACAAGAGGATTCCAGAGTGGGAGCAGGAAGGCAGGGGTCCGTGGAACCAGCCTGCTCCCCTGCTCCCTACGGGCCTCCTCCACCCTATCTCAG s panTro1.chr6_random 674326 134 - 67355074 GGTGGGGCAAGCCCAGGCTAGATCCCAACCCTGAGCCAGGGACAAGAGGATCCCAGAGTGGGAGCAGGAAGGCAGGGATCCGTGGAACCAACCTGCTCCCCTGCTCCCTACGGGCATCCTGCACCCTATCTCAG a score=43147.0 s hg17.chr7_random 715058 463 + 778964 GGACCCAGGCCCCAGTCCCAGAGCACCCAGGGGCCACCCCCACCCCGTCCCT--GGCCAAG---------------CCTCA---------------------------------------------------CCCCCTCCAGAGCGGCCTGT-------CACCACCTCGGGGTGGGAGCAGCCTCTCTGCTCTCCATCAATGCGGAGAGTTGATACCAGGGTTGTCTACCTTCATGAAAGTTACTTGTTGTGATTTCTTCGGCCTACAGAAAAATATAAACGTGG--GCTCCTAGGAGCACCAGCACATGACCAGGACCTCGTCCTTCTAAAGCGTGTAAAGTTTGCTTTACTGTA-TTGACAGCAACAATAATCAGACCAAAAGCAAGATGACAAGA--CTCCTTCTCACTCGGGTAGTTCGGAGGAGCAAAGTGTGAGAGGCC-----------------CAGCGGGGCTGCA-----GCCTCAGCTCTGATACCCCAGCCAGACCCGCTG-TCTCCCAGACTCAGT-------------TTCCCCACCCCGCCTAAGGTCTCCGGGGCTCCTCCGC s panTro1.chr6_random 674460 512 - 67355074 GGACCCAGGCCCCAGTCCCAGAGCACCCAGGGGCCACCCCCACCCCGTCCCT--GGCCAAG---------------CCTCACCCCCCTCCAGAGAGGCCCCTCACCCCCACCCCATCCCTGGCCAAGCCTCGCCCCCTCCAGAGCGGCCCCT-------CACCACCTCAGGGTGGGAGCAGCCTCTCTGCTCTCCATCAATGCGGAGAGTTGATACCAGGGTTGTCTACCTTCGTGAAAGTTTCCTGTTGTGATTTCTTCGGCCTACAGAAAAACGTAAACGTGG--GTTCCTAGGAGCACCAGCACATGACCAGGGCCTCGTCCTTCTGAAGCGTGTAAAGTTTGCTTGAGTGTA-TTGACAGCAACAATAATCAGACCAAAAGCAAAATGACAAGA--CTCCTTCTCGCTCCGGTAGCTCCGAGGAACAAAGTGTGAGAGGCC-----------------CAGCGGGGCTCCAAAAGGG-----GCTCTGATACCCCAGCCATACCCGC----------------GTGAGCCGCTGTAAGGTCCCCACCCCGCCTAAGGTCTACGGGGCTCCGCCGC s canFam1.chrUn 1773139 479 + 91062872 GGCCCCAGG-GTCAGGCCTGGGGCACTGGGAGTCCACTCCTTCCCCCTCCCCCAGGCCAGGGATGCTGAGGTCGTCCTTCGCCACCCTCA------------------------------------------CACCCTCCAGAGGGGCCACCTGCAGAACACCACACCA-----GAAGCA------CTG------GCTAATTTGGAGACTGCACACT-GAATTGTCTAAATTGGT-CGAGTTTTTCGTGGCAACCTATTTAGTCTGTAGAAAAACA-AAGCATGGCAGCTCCTAGGAGTCTCAG-GTATGCCCAGGGCAAACTCCTACTA------------TTTGTTCCAGTGTATTTGGAAACCACGAGGATACAGCCAAAGGCAAAGTAACACACATTTTCTTCTGACTCT-GTGGCTTGGAGGAGC----TGTGTGGGGCCTGGAGCCCGGGGCGGGGCTGGGGGGTTCCA-----GCCTA-GCTCCGCACCTACTGGCAAAGTCCCGGCTGTCTCTGGCCCAGC-------------CTCCCCACCCCATCTAAGGTTCCTGAGGGTCCTTGAC a score=7292.0 s hg17.chr7_random 715521 402 + 778964 GCAGCGATTCCATTCCTTCTGACCCAGGCTGCCTCTGCAAGA-GTCCCGTCTGGGTTTAGAGTTGGTCGTACATTCATTCATCCAACATCTGAGTGTTCCCTGTGTGCATGGCGCACAGTGTGGCCAGACACACACTCTGGTGTAGAGGAACCAGCCGGCCTGTGCCCGTATCAT--------------GAACGCCGTAGCCTGTCCCTGGGAC---TAGACAGCCAATCAGGCGTTGTGCGCAGCATAACTAGCTTGATGCCTGCTGACCCCCAGCCAGAGCTCACCTGGGTCAAGA----GTTCCTGGACCCTGGAAGGtgtggtggtttgaaaacaggaccaccagt-----------cccttgatctctcacatcagcaagtgggggtctgtgt---ccccctggatccaggcaggctgtctcatcatcaacca s canFam1.chrUn 1773618 397 + 91062872 TTGGTGGTTCAGCTCATTCTGATCCAAGCAGTCCCTGCAAGGCCTTTTGTGTGGGTTT--AGTTAGTCATGCATTCATTCAACAAACGTTTG---------TGTGGGGCTGGGG---AGGGTGGGCGG----ACAGCCTGGTGTAGGCTGATGAGCT-GCCGACGCCTGTGCCACCCAAGACTACAGGAGGGCCCCCTCTCCCCTGCCAAGGATGTGGAGAAACCCAGGCAAG--------------------GCACAATCTCTGCTGACCTCCCTCTGGGGCCCAGTTGGGTCAGGACTGTGTTACTGGAAGCTAGGA-GTGTGGCAGTTTAGTAACAGGACTGCTAGTTCTGTGGTTCCCCCTCCACCGCCCCAACCAGAAGGT-AGGGTCTGGGTCTCCTCCCTGAGTCCAGGTGGGCTGGCCCTACAACAAACA a score=689.0 s hg17.chr7_random 716162 70 + 778964 CAACCCCAGGG--------------------AGCCCGCTG-------AGCCCCCCACCCCCACCTGCAGGGAGCTTGCTGAGCCCCCTCCCCCACTC s danRer1.chrNA 177839029 97 - 390413307 CAATTCCAGGGTGAGAGGTGGACCCCTGGGTAGCTTGCTGGGGTTAGAGTCCCCTAGGTGGAGGGGCAGGGGGCTCCCTGGGGCCTCTACTGCAAGT a score=2794.0 s hg17.chr7_random 716232 104 + 778964 CCAGGGAGCCCGCTGAGCCCCCCACCCCCACCCCACCCACAGGAAGCCCACTGAGC------GCCCCCACCCACCCCGACACCCAGGGAGCCCGCTGAGCCCCCTACCCc s panTro1.chr6_random 675765 72 - 67355074 CCAGGGAGCCCGTTGAGCCCCC-ACCCCCAGCCTCCCCACAGGGAGCCCACTGAGC-------CCCCCACCC-------------------CCACT-----------CCC s danRer1.chrNA 177839126 88 - 390413307 CCAGGGAGAGAGGTGGACCCCT------------------GGGTAGCTTGCTGGGGTCAGAGGCCCCTAGGT----GGAGGGCCAGGGGGCACCCTGGGGCCTCTACTGC a score=12646.0 s hg17.chr7_random 716336 157 + 778964 acccccagggagtctgctgagcccagaccccaagcatcacgg-agcacacaagcgccactcaccgggccctgtctgaggtctgcagggcagcatccgtagtgaacatgaggcgtctgtttcgtgccaccacgttttggagtgtgatgcacacagcaat s panTro1.chr6_random 675837 157 - 67355074 ACCTCCAGGGAGCCCGCTGAGCCCAGACCCCAAGCATCACGGTAGCACACAAACCCCACTCACCGGGCCCCGTCTGAGGTCTGCAGGGCAGC-TCCGTAGCGAACATGAGGCGGCTGTTTTGTGCCACCAGGTTTTGGAGTGTGATGCACACAGCAAT a score=28996.0 s hg17.chr7_random 716493 322 + 778964 CACCCGACAGATCGAGGAA-------GGGCCACAGGACAGGCTGCGTCCATGGAGACGTTTGCCGCT-------TTTCCAAA----ACTGGGGGCC----------GCTGAGAGGCACCTGGGCGTCCCTCGTCAGGGAGTTCTCGGGGCCAG----CCACAGGTGGGGAGAC---GCTTGGCTTAGGTAATAGG----AGGATAGGAGAGGAGGCCTCACTTCCAGCTGCTGTGCTCAGGGTGGGGCACGCAGAGGCCTTGAAGAGTAGGAGCAGGCAGTATTCCAGGAT---GACTGCAGGCCCACCGGG---------CCCACTGGGAGCTGAA--GGACATGGCGCACACAGCAGAAGCTCCGGGAGGCAC s panTro1.chr6_random 675994 322 - 67355074 TGCCCGACAGATCGAGGGA-------GGGCCACGGGGCAGGCTGCGTCCATGGAGACATTTGCCGCT-------TTTCCAAA----ACTGGGGGCC----------GCTGAGAGGCACCTGGGAGTCCCTCATCAGGGAGTTCTCGGGGCCAG----CCACAGGTGGGGAGAC---GCTTGGCTTAGGGAATAGG----AGGATAGGAAAGAAGGCCTCACTTCCAGCCGCCGTGCCCAGGGTGGGGCACGCAGAGGCCTTGAAGGGGAGGAGCAAGCAGTATTCCAGGAT---GACTGCAGGCCCACCAGG---------CCCACTGGGAGCCGAA--GGACATGGCGCACACAGCAGAAGCTCCAGGCGGCAC s danRer1.chrNA 177839214 350 - 390413307 --------AAGTCCAGGGAGAGAGGTGGACCCCTGGGTAGCTTGC-----TGGGGTCTTAGGCCCCTAGGTGGAGCTCCAGGGGGCACCGTGGGCCTATACTGCAAGTCCAGGGAGACAGGTGGACCCCTGGGTAG---CTTGCTGGGGTCAGAGGCCCCTATGTGGAGGGCCAGGGCTCACCCTGGGGCTTGTGCTGCAAGTCCAGGGAGAGAGGTGGACCTCTGGGTAGCTTGC------TGGGGT---CTGAGGCCCTTTGGTGGAGGGACAGGGGGCACCCTGGGGCCTATACTGCAAGTCCAGGGGGAGAGGTTGACCCCTTGGTAGCTTGATGGGGTCAGAGGCCCCTAGGTGGAGCTCCAGGGGGCAC a score=16339.0 s hg17.chr7_random 716815 174 + 778964 ATGCCGGACGTGGGGAGGGCCCAGTTCCCATCACTGTTGGGTGTGACAGAGACGTCATACGCGACAGCAGCTCCACAGCCGTGAATGTCCTCTGCACCAGACCCCATTCAACCAGCTCCACCTACACAGTCTCGCGTCAGCTCACCCCCAACCCCACGCAACCAGCTTCACCTG s panTro1.chr6_random 676316 174 - 67355074 GTGCCGGACGTGGGGAGGGCCCAGTTCCCATCACTGTTGGGTGTGACAGAGACGTCATACGCGACAGCAGCTCCACAGCCGTGAATGTCCTCTGCACCAGACCCCATTCCACCAGCTCCACCTACGCAGTCTCGCGTCAGCTCACCCCCAACCCCACGCAACCAGCTTCACCTG a score=15779.0 s hg17.chr7_random 716990 184 + 778964 GCAGTCT-CGCGTCAGCTCACTTCCAACCCCCTGCAACCAGCTTCACCTGCGCAGTCTCGCGTCAGCTCACCTCCAACCCCACGCAACCAGCTTCACCTGCGCAGTCTCGCTTCACCCTCACCTCCAACCCCCTGCAACCAGCTTCACCTGCGCAGTCTCGCGTCACGCTCACCTCCAACCCCCT s panTro1.chr6_random 676491 184 - 67355074 GCAGTCTTCGCGTCAGCTCACCCCCAACCCCCTGCAACCAGCTTCACCTGCGCAGTCTCGCGTCAGCTCACCTCCAACCCCCTGCAACCAGCTTCACCTGTGCAGTCTCGCTTCACGCTCACCCCCAACCCCCTGCAACCAGCTTCACCTGCGCAGTCTCGCGTCA-GCTCACCTCCAACCCCCT a score=6139.0 s hg17.chr7_random 717174 67 + 778964 GCAACCAGCTTCACCTGCGCAGTCTCGCGTCAGCTCACCTCCAACCCCCTGCAACCAgcttcacctg s panTro1.chr6_random 676828 67 - 67355074 GCAACCAGCTTCACCTGCGCAGTCTCGCGTCAGCTCACCTCCAACCCCACGCAACCAgcttcacctg a score=72142.0 s hg17.chr7_random 717241 612 + 778964 cgcagtcttgcttcactctcacctccaaccccacggggcaaacattatgaccccactttagagatgagcagtgtcagaggagtta-aggaacgtgcctggggccacacagc----aaggaagagctgggactagggtttgaGGCACGTTAGGTGACCGTGTA---ATTCTCTGCTTTACCCAGCACAGCGCACGCCAGCCAGCCCGGGCAGGGCCGCAGCATCCCAGGCCGGGGATCGCCAGGCTCCTTTTCAAGTGCATTTCTGAGATACAACAGTC-AATTTCCCCAACTGCGCAAGTGAAaacaatgtttggctaaggaggctggtgaggggctgacagtcttaattctaagggacgtctccagc---ggtgacacggggctccgtccCCA-------AGCAGACCCCCTGCTGGGATCAGTGGAACCCGACCCAGTGACCTTCTGCCTGGCTGAAGAAA-GCCCTATGGGTGGATTATACAACGCGCTGCGTGCCTGCAAGATCTGA--CTGTAAAGCTGTTCCCATGAGCAGCCTCTGAGAGCCTTCGTGGCCCCCAAGCAGGCCAGGGGC----------AGGCCCAGACTGAGGGGTGAGGGGAAGGCCTCCCTGCACTTGGTGGAGAAGTTAGAAC s panTro1.chr6_random 676895 616 - 67355074 tgcaatcttgcttcaccctcacctccaaccccacggggcaaacattatgaccccactttagagatgagcagtgtcagaggagtta-aggaacgtgcctggggccacacagc----aaggaagagctgggaccagggtttgaGGCACATTAGGTGACCGTGTA---ATTCTCTGCTTTACGCGGCACAGCGCACGCCAGCCAGCCCGGGCAGGGCCGCAGCATCCCAGCCCGGGGATCGCCAGGCTCCTTTTCAAGTGCATTTCTGAAATACAACAGCC-AATTTCCCCAACTGCGCAAGTAAAAACAATGTTTGGCTAAGGAGGCTGGTGAGGGGCTGACAGTCTAAATTCTAAGGGACGTCTCCAGCAGTGGTGACACAGGGATCCGTCCCTA-------AGCAGACCCCCTGCTGGGATCAGTGGAACCCGACCCAGTGACCTTCTGCCTGGCTGAAGAAAAGCTCTATGGGTGGATTGAAAAACCCGCTGCGTGCCTGCAAGATCTGA--CTGTAAAGCTGTTCCCATGAGCAGCTTCTGAGAGCCTTGGTGGCCCCCAAGCAGGCCAGGGGC----------AGGCCCAGATTGAGGGGCGAGGGGAAGGCCTCCCTGCACTTGGGGGAGAAGTTAGAAC s canFam1.chrUn 1774694 570 + 91062872 CACAATCCTGCTTCACAGGCACGCCGAATCACAAGAG------------------CTTCACAGACAAG-AGTGTGGTGGCCCCCAGAAGAACCTTGCCGGTGCCACATGGCTCATTACAAAGAGC----ACCAAGAGTTGGGGCCGGTTGGACTGCCCCCCAAGGACGCTGTGCGTTAGCCAGCACAGCACATGC---CCACCCCGGACC--GTCACGATGTGGCAGGTGAGGGACTGCCGGGTTCACTGCCCAGCACATTCCTGAAACACATCGGCCTGAGTCCTCCAGCTGCAAAAGTAAATGGAACGATGGACCGGGAAGGCTGGAGGG---------------------------GTCTCCAGTGGAAATGACACACGGCTCTGTCCATGCTAGAGCAGTAGTTCACCTACTG------GTGAACTACTACT--GGGCCCATCTGCGTGGCTGGGTCAA-GCTCGACATGTGGATTTTAAAACCTGC---------ACAGGATCTTCTTTTGCGAAGCAATTTCTGTGGGAAAGGTTCCAAAGGCCTGCAGTCCCCCCAGCACGCCACGGTCTTGGGTTTCTAGGCCCAGACTGAGGAGTAATTGGAGGG-TTCCCCGCCCACGGAGCTTGGGTTAGAAC a score=5343.0 s hg17.chr7_random 717853 37 + 778964 CAGACGAGAGGAACCCTCGAGGAAGGGAAATCCTT--TG s panTro1.chr6_random 677511 37 - 67355074 CAGACGAGAGGAACCCTCGAGGAAGGGAAATCCTT--TG s mm5.chr5 136419084 39 + 149219885 CAGACAGGACACAGACAGGATGAAGCAGGATCATTACCA s canFam1.chrUn 1775264 37 + 91062872 CAGACCAGCTGAGTCCCACAAGAGAGGGGATGCTC--TG a score=44115.0 s hg17.chr7_random 717890 147 + 778964 ACCAACTGGAGGTGGAGCTCGGGTAGGAAA-GTTAGTCACCAGCCGCCTAATTTGGTCACATTCCAGGAGGCAAGAGCGGCCCAAGAGGGGAGAGAGAGGTCAGCGTGGCTGGTAGCT--CTGGAA-GGGGCAAGGATGAGCTGGACTCTG s panTro1.chr6_random 677548 147 - 67355074 ACCAACTGGAGGTGGAGCTCGGGTAGGAAA-GTTAGTCACCAGCCGCCTAATTTGGTCACATTCCAGGAGGCAAGAGCGGCCCAAGAGGGGAGAGAGAGGTCAGCGTGGCTGGTGGCT--CTGGAA-GGGGCAAGGATGAGCTGGACTCTG s mm5.chr5 136419123 117 + 149219885 ACCAACTGGAGCTGGAGATGGTGGAGGAGGCCTCAGGCACCAGCTTCCCAATGTGGTGACATCACA-GAGGCAAGTGCAGCT-------------AGAAAGCAGCCAGGCT----------------GGGTCAATGAAGACTT----CCTG s rn3.chr12 30485315 115 - 46649226 ACCAACTGGAGCTGGAGACGGTGGAGGC---CTCCGGCACCAGCTTCCCAATTTGGTGACATCACA-GAAGCAAGTGCAGAT-------------AAAAAGCAGTCAGGCTG---------------GGGTCAATGAAGACTT----CCTG s canFam1.chrUn 1775301 149 + 91062872 CCCAACTGGAGGTGAGGCTAGGGCAGAGAA-GTGAGTCACCAACTGCCTAATTTGGTCACATCCCAGGAGGCAAGAGCTGTCCGAGAGGGGAGAGCCAGGTCAGCATGGTCCAGAGCTTCCTGGAAGGGGGTGGGGTTGAGCG-CATTCAT a score=27621.0 s hg17.chr7_random 718037 366 + 778964 ACGAGGCCAGGGCAGGCCCACAG----CCCATCTGGACCGGGGAGT-CTCCTAGGCCAG--AGCC-CTTGGGGCCGAA----------TGGAGCTCCGAAGGGTG----GGGCCCAGGAT-CCCGGAGCCACCC--------------------CTGCCGAGGGCCTCCTGGCCC------GACCTCCAGACATGAAATCACCCCCAAGTCCC---------------AGGCCC-CATATGG----CAGGGCCT----------GCCTGTCTCCCCAGCGTGGCAGCCGGGGGGCCCGGGAGGAAACTGCCTGGCCTCAAAGT-GAGTCACC------CCC---GCCGGCTGATTCAGCCA----CCCTGAGCCAGGGGAGGT-----GAGG--CCGGGACTGTCCGTGGTCT----GGAGGGGCCTCGG------CCAAGCCCAGTCCC------------CAGAGGCCAGC--------TCACCCCAGCAGGGC s panTro1.chr6_random 677695 366 - 67355074 ACGAGGCCAGGGCAGGCCCAGGG----CCCATCTGGACCGGGGAGT-CTCCTAGGCCAG--AGCC-CTTGTGGCCGAA----------TGAAGCTCTGAAGGGTG----GGGCCCAGGAT-CCCGGAGCCACCC--------------------CTGCCGAGGGCCTCCTGGCCC------GACCTCCAGACATGAAATCACCCCCAAGTCCC---------------AGGCCC-CATATGG----CGGGGCTT----------GCCTGTCTCCCCAGCGTGGCAGCCGGGGGGCCCGGGAGGAAACTGCCTGGCCTCAAAGT-GAGTCACC------CCT---GCCGGCTGATTCAGCCA----CCCTGAGCCAGGGGAGGT-----GAGG--CCGGGACTGTCCGTGGTCT----GCAGGGGCCTCGG------CCAAGCCCAGTCCC------------CAGAGGCCAGC--------TCACCCCAGCAGGGC s mm5.chr5 136419240 325 + 149219885 GCAGGACCAGGGC-------CAG----CTGATCTCAG--AGGAAGT-AAACTAACTGAA--AG-----TAGGGGTGGG----------GGGAGC-----AGAAGG----GGACACTAAAT--CTAAAGCTA------------------------GGACCAGGGT------------------ACTCTGGATGTGAAGTCACCC---AGCCCC---------------AGTCTTGCAGGAGG----CTG---CT----------GCTTGTCTCCCCAGAAT-ACAGCCAGGGG---------------GCCTGACCTCAACAT-GAGTCACC------CGCCAGCCCAGCTGATTCAGC----------GGAACTGGGGGAGT-----GAGG--CTGGGACTGTCCATGGACT----GAAATGGC--CAG------CCAAGGTCAGTACTGTCCACTGTCTGGAAGGGCCAGCCAAGGCCATCAGACCAGCAGGGC s rn3.chr12 30485430 326 - 46649226 GCAGGACCAGGGC-------CAG----CTGATCTCAG--AGGAAGTACAACTAACTGAA--AG-----GCGGGGGGCG----------GGGAGC----AGAAGGG----GGGCACCGAAT--CTAAAGCTA------------------------GGACCAGGGT------------------ACCCCGGATGTGAAATCACCC---AGCCCC---------------AGTCTTGTAGGAGG----CTG---CT----------GCTTGTCTCCCCAGACT-ATAGCCATGG----------------GCCTGACCTCAAAGT-GAGTCACC------CGCCAGCCCAGCTGATTCAGC----------GGAACTGGGGGAGT-----GAGG--CCAGGACTGTCCGTAGACT----GAAGCGGC--CAG------CCAAGGTCGGAACTGTCCACTGTCTGGAAGGGCCAGCCAAGGCCATCGGACCAGCAGGGC s canFam1.chrUn 1775450 309 + 91062872 GCGAGGCCAGGGCAGACCC-CAGGGCCCCCATCTGGA--TCTGAGT-CTCAGGGACCAG--AGCC-CCTACGGCC-------------TGCAGCCACCATGGGAACCTTCGAACCAGGAC-CCCCAAGTCACCCAGATGGACAGGCCACCGCTGAGGGCAAGGAC------------------CTCCCAGACAAGGAGTCACCC---TCCCCC---------------GGGTGC------------------------------------------AGCCTGGCAGCTGTGGG-CCTGGGAGGGAGACGCCAGACCTCAAAGT-GAGTCACT------G-----CCCGGCTGATTCAGC------CCCCGAGCCAGGCGAGGT-----GAGG--CTAGGGCGGTC--------------AGCAGC-------------------------------------CACGGGTG-----------TCGCCCCATCAGGGT s danRer1.chrNA 228598466 424 + 390413307 ATAGGCCCCAGGCTGCCCCCTGG----CCCTCCTCC---TAGGGGC-CTCTGACCCCAGCAAGCTATCCAGGGCTCCACCTCTCCCCCTGGACT--TGCAGTAGA----GGCCCCAGGGTGCCCCGTGGCCCCC---------------------TGCCTAGGGGCCTCTGACCCCAGCAAGCTACCCAGATGT----TCACCT---CTCTCCCTGGACTTGCAGTAGAGGCCC-CAGTATGCCCCCTGGCCCTCCAACTAGGGGCCTCTGACCCCAGCAAGCTACCCAGGGGTCC----ACCTCTCTCCCTGGACTTGCAGTAGAGGCCCCAGGGTGCTC---CCCGGCC-CTCCACCTATTGCCTCTGACCCCAGCAAGCTACCCAGGGGTTCCAACTCTCTCCCAGGTCTTGCAGTAGAGGCCCCAGGGTGCCCCTTGCCCACCAC-------------CTAGGGCCTTC--------TGACCTCAGCAAGCT a score=1673.0 s hg17.chr7_random 718403 7 + 778964 GCGTGGG s panTro1.chr6_random 678061 7 - 67355074 GCGTGGG s canFam1.chrUn 1775759 7 + 91062872 GTGCAGG s danRer1.chrNA 228598890 7 + 390413307 ACCCAGG a score=45436.0 s hg17.chr7_random 718410 393 + 778964 CCGGTGCCACTGTTCAGCCTGGGACCCCtgccgagcctcttacggccagtaattagctcattccaccaacagcctggatgggtcgtgacacccatcttacagacgggaaagctgaggccctgagaggtccaggcttggggtccatatcgggcagggctgggcagccccaggcaAAGCCCCTGCATCTAGAATAGTG----ACAGGAGCCTACAGTCACCTGCTGGCTTCTGGACCCAACAGAAAGTCCACCCTGCTTGGAATCCTTTGGCTAGAATTCCAGCCTCTGGAAAACTGTCTTTCTGGGGAAAGCTAGGCCACCTCCCAACTGCCAGGAAT-GTGTGAAAGGGGCTCAGACTGTAAAAGGAATCGgaatgagtgaacaaatgaaggaatgaa s panTro1.chr6_random 678068 393 - 67355074 CCGGTGCCACTGTTCAGCCTGGGACCCCTGCCGAGCCTCTTACCACCAGTAattagctcattccaccaacagcctggatgggttgtgacacccatcttacagacgggaaagctgaggccctgagaggtCCAGGCTTGGGGTCCATATCGGGCAGGGCTGGGCAGCCCCAGGCAAAGCCCCTGCATCTAGAATAGTG----ACAGGAGCCTACAGTCACCTGCTGGCTTCTGGATCCAACAGAAAGTCCATCCTCCTTGGAATCCTTTGGCCAGAATTCCAGCCTCTGGGAAACTGTCTTTCTGGGGAAAGCTAGGCCACCTCTCAACTGCCAGGAAT-GTGTGAAAGGGGCTCAGACTGTAAAAGGAATCGgaatgagtgaacaaatgaaggaatgaa s canFam1.chrUn 1775766 334 + 91062872 GTGG---------CCAGGGTGTG--------CAAGGCTCTTCTTGCCAGTTAGGATCTCATTTCAAACAGGGCCACGG-GGGTCACTAC-CAAATTTAATGGACAGGGAAGCCGAGGCTC---AAGGTGCACACT-------CACAAGACCCAGGTCAGGGCAGCCCCTGGAAAAGCCTCCACACCTGGACTCATGTGCAACAAGAG---------------GGGCCGCTGGGCCCG--TGCAGGTCCGTCCTCT---GAACACCCAGTCCACAAGAGCAG--------AAAGGGTCTCTCCGGGG-CAGCCAAGCCACCTCC--ACTGCCAGGAGCAGGGTGAAAGGGGC----AGGGGAACTGGAATAGGGCTGATGGTTCAGATGAAATAATGAA a score=256538.0 s hg17.chr7_random 718803 2796 + 778964 ctaatgaatgaagaaatgaacgaatggctaaaggaatgaatggacaaa--catgaatgaatgaa----tcaacagataaacaaatgaGCCAGTGCTTTGTCAGGACAGCAGGTGTATGAGTCCCCACTGGTCTGCCTCCTGCCCCAGGGGAAGCGGTTTCCCTGCCCCCATGGCCAGCAAGGGGCAGAGGCCAGCGAGGTTGTCCATCCTGGATGTTCTCAGTGGTTCCAGGCCGAGTCCTGGGGACCCACCCGAGGGCCCAGTGTCTGCTGTGTCTGTCAGAGACTTGGCTGGTGGCACCAGACAGGCAGGTGGGGCCCAGGCTGGCCGAGGAGCAGCGTTTCCAGTTACACCTGCCTTCTGGGTGGCCCTAGGCCAACCTCTGCACGCTGGAACCTCTGTTTCCTCATCTGTTCCTTGCACGGGACCTTTTGCTATTTAGCAGCCTCCCTTCAGGCCC-ACAGGATGCTGGGAGTCAGGCTGTGCAGGGCAGGCAAGGGGTCCGAGGCTTCCGGGCGGCCTCCCCCAGGCAGGGAAGCCTCTGACTCTCTCTGGGGCTGAGCCTGCCTAAGGTCACTCGTTTCTCCCCACACCACAGCCCCCAGACCCAGCCCTTGCCTGGGCCCCACCTGAGCTCACCCCAGGTAAGACTTCCTGGGTAAGGTAAGGTTCCCACTTCGTTCTCTTCCCGACACACTGGAGGGGGGATGTGCATTCCTAGGctatatcagagcagagagggcgaggcacagagaggccaaggggtttgcccaagctcacacagcaagggcagagGGAAACTTGGCGGGGCCTGCAGGGCTTCTGTCTGGGTGGTGTTGGGGAACAGGGGCTGGAAAGGGGCCTCCACGGGGCTTCAGGACAGAGAAGGGGGTGcccccactagaacgttagcaccaagacagctgttttctgctatatctctagggctgagttcagcgccaggcgcacatcaggagttctgtaaacactGCCTGGCCaccttggagcaggcaatgattttttatttttatttatttacttttctgagacaggatttcact--ctgtca-cccgggagtgcggtgacatgatcatagctcaccacagcctccaccacctggactccagcaatcctcctgcctaagcctcctgagtagctgagactacaggtatgcaccaccacgcctggctattttaaacaattttttgggggggggcatagggtctcactatgttgcccaggctcgaactcctggcctcatgcagtcttcccacctccgcctcctaaagtgctgggattacaggcatgagccacctcgccttgcaatttttaaaataggacgttgaaccaaaaaaaaggtggataaattggactctataaaaactaaagacttttgctatttagaagacatcatttaagaacatgaaaaggccagctgcaggctgggagaaagtatttgcagtgtgtg-cgtctgacgaaggagctatgtctagaatacacaaagacctcctccagcccagtgataagaagacagcccaatttctgtaaatgggc---agattttgagcagacatttcacgaaagaagatctgcagtcaatacagacatgaagagatgct-tcacg-tcgtccgtcatcaggaaatgcaattacaaccacggcgagatacaactacacccatcagaactgccaaaattagaaagcctgattacatcaagtgctggtgaggatgcggggcacctgcgacgcccccacactgctggcgggaaggcaacgtgatggggccactttggagaagggttcggcaatttctcgtaagtgaaacacacacttactgtgcgatccagcccttccatgcctcagtattgacccaagacaagtgaaaacatatgtccTggctgggcgcagtggctcatgcctgtaattccagcactttgagaggccgaggggggaggatcacttgagcccaggaggttgagaccagcctgggcaacatggttagactctgtctctacaaatgatcattaaaaaaaaaaattaagctgggcatggtggcacatgcctgtggtcccagctactcaggaggccgaggtgggaggatcgcttgaggccagaagtttgagaccagcctgggcaacatagtgagaccctgactctacaaaaaatttaaaaattagctgggcatggtggtgactgcctgtagtcccagctgcttgagaggctgaggtaggaggatcacttgagcccaggcagtcaaggttgcagtgagctgtgatcacaccagtgcattccagcctgggtggcaaatggagaccctgtctcataaaaaaCCACCCCAAaatacagagagatgggtgcacccttcacccagtttcccccagtggtttaacatcttgctaagctaccccagcatatcacagccagatctcaacatggatgcccgagccacagaacaGCTACGGCTGCCtttttatttttattttttgacaaagtctcgctgtcgcccaggctggagtgcagtggcgggatcttggctcactgcaacctccgcctccggagttcaaccgattcccctacctcagcctcccaagtagctgggactacaggcatgcaccaccacgcctggctagttttgtatttagtagagatgaggtttcgccatgttggccaggctggtctccaactcctgacctcaggtgatctgcccgcctctcccaaagccctgggattacaggtgctcaccaccacccccagctaatttttgtactttttagtagaga-cagggtttcacc-atgttgcccaggctggt s panTro1.chr6_random 678461 2814 - 67355074 ctaatgaatgaagaaatgaatgaatggctaaaggaatgaatgagcaagttcatgaatgaatgaatgaGTCAACAGATAAACAAATGAGCCAGTGCTTTGTCAGGACAGCAGGTGTATGAGTCCCCACTGGTCTGCCTCCTGCCCCAGGGGAAGCGGTTTCCCTGCCCCCACGGACAGCAAGGGGCAGAGGCCAGCGAGGTTGTCCATCCTGGATGTTCTCAGTGGTTCCAGGCCGAGTCCTGGGGACCCACCCGAGGGCCCAGTGTCTGCTGTGTCCATCAGAGACTTGGCTGGTGGCAGCAGACAGGCAGGTGGGGCCCAGGCTGGCCGAGGAGCAGCGTTTCCAGTTGCACCTGCCTTCTGGGTGGCCCTAGGCCAACCTCTGCACGCTGGAACCTCTGTTTCCTCATCTGTTCCTTGCACGGGACCTTTTGCTATTTAGCAGTCTCCCTTCAGGCCCAACAGGATGCTGGGAGTCAGGCTGTGCAGGGCAGGCAAGGGGTCCGAGGCTTCCGGGCGGCCTCCCCCAGGCAGGGCAGCCTCTGACTCTCTCTGGGGCTGGGCCTGCCTCAGGTCACTCATTTCTCCCCACACCACAGCCCCCAGACCCAGCCCTTGCCTGGGCCCCACCTGAGCTCACCCCAGGTAAGACTTCCTGGGTAAGGTAAGGTTCCCACTTCGTTCTCTTCCCGACACACTGGAGGGGGGATGTGCATTCCCAGGCTATATCAGAGCAGAGAGGGCgaggcacagagaggccaaggggtttgcccaagctcacacagcaagggcagagGGAAACTTGGCAGGGCCTGCAGGGCTTCTGTCTGGGTGGTGTTGGGGAACAGGGGCTGGAAAGGGGCCTCCACGGGGCTTCAGGACAGAGAAGGGGGTGcccccactagaacgttagcaccaagacagctgttttctgctatatgtctagggctgagttcagcgccaggcgcacatcaggagttctgtaaacactGCCTGGCCaccttggagcaggcaatgattttttattgttgtttatttacttttctgagacaggatttcactacatgtcaccccgggagtgcggtgacatgatcatagctcaccacagcctccaccacctggactccagcagtcctcctgcctaagcctcctgagtagctgagactacaggtatgcaccaccacgcctggctattttaaacaatttttttttggggggcatagggtctcactatgttgcccaggctcgaactcctggcctcatgcagtcttcccacctccgcctcctaaagtgctgggattacaggcatgagccacctcgcctggcaatttttaaaataggacgttgaaccaaaaaaaaggtggataaattggactctataaaaactaaagacttttgctatttagaagacatcatttaagaacatgaaaaggccagctgcaggctgggagaaagtatttgcagcgtgtgccgtctgacgaaggagctatgtctagaatacacaaagacctccgccagcccagtgataagaagacagcccaatttctgtaaatgggcaaaagattttgagcagacatttcacgaaagaagatctgcagccaatacagacatgaagagatgctatcacgttcgtccgtcatcaggaaatgcaattacaaccacggcgagatacaactacacccatcagaactgccaaaattagaaagcctgattacatcaagtgctggtgaggatgcggggcacctgcgacacccccacactgctggcgggaaggcaacgtgatagggccactttggagaagggttcggcaatttctcgtaagtgaaacacacacttactgtgtgatccagcccttccatgcctcagtattgacccaagacaagtgaaaacatatgtccTggctgggtgcagtggctcatgcctgtaattccagcactttgagaggccgaggggggaggatcacttgagcccaggaggttgagaccagcctgggcaacatggttagactctgtctctacaaaTGATCATTAAAAAAAAAAATTAagctgggcatggtggcacatgcctgtggtcccagctactcaggaggccgaggtgggaggatcacttgaggccagaagtttgagaccagcctgggcaacatagcgagaccctgactctacaaaaaatttaaaaattagctgggcatggtggtgactgcctgtagtcccagctgcttgagaggctgaggtaggaggatcacttgagcccaggcagtcaaggttgcagtgagctgtgatcacaccagtgcattccagcctgggtggcaaatggagaccctgtctcataaaaaaCCACCCCAAaatacagagagatgggtgcacccttcacccagtttcccccagtggtttaacatcttgctaagcttccccagcatatcacagccagatctcaacatggatgcccgagccacagaacaGCTACGGCTGCCtttttatttttattttttgacaaagtctcgctgtcgcccaggctggagtgcagtggtgggatcttggctcactgcaacctccgcctccggagttcaaccgattcccctacctcagcctcccaagtagctgggattacaggcatgcaccaccacgcctggctaattttgtatttagtagagatgaggtttccccatgttggccaggctggtctccaactcctgacctcaggtgatctgcccgcctctcccaaagtcctgggattacaggtgctcaccaccacccccagctaatttttgtactttttagtagagaccagggtttcacctatgttgcccaggctggt a score=199180.0 s hg17.chr7_random 721600 2323 + 778964 tcaaactcctgacctcaggtgatccgcccacctcagcctcccaaagtgctgagatgacaggcgtgagccaccgcgcccggccCCAGCTGCCTTTTTATAGCCACACTGCCTCCTCCTCAACTGCTGGCCCtgattttggcatccgcagaatgtcgtgtaaacggaattgcagagtgcacggcttctttccctcagcatcgttcctgacaattccatcctggttgctgggcacactgctagttccttttcggtgccgagtagcatttcggagcatggatgtaccacggtttgttccccccgctgaaggatgccacggttggttccagcttgagcctctctgagtcaagctgctgtgttcatgagtgtgcgggtctgtgtcttcactctctgggataaatgcccaagaatgccatgtgatgtgttgtatggtaattgcatgcttagtttggatttttgtgttgttaagaaactacgaactattttccagagtgactgccccatcttatgttcccagaagcaatgtctgagtgatcctgtttctctacaggacagagtgctgctgtgtgtggtttttttttgtttttttttgttttctttttaaggcaggatctcactctgtcacccaggctggagtgcagtggcatgatctcagctcactgcaacctccgcctcctgggttcaagcgattctccctgcctcagcctcccaagtacctgggattacaggcgcctgccaccacacctggctaatttttttt-gtatttttagtagagacagggtttcaccatattggccaggctggtttcgatctcctgaccttgtaatccgcctgtctcggcctcccaaagtgctgggatttcaggcatgggccaccgtgcccggcctgctgtttctcattctagccattctgataataggtgtgtgggggtgtcttaccgtggctttaatttgcattttcctactggctggtggtctgacatctttccctgtgttcactgccgtccgcatgtcctcgtggggaagtgcctcttcataacctagttggattgtttgcattttatggttgagttttgagaggtttttttttt--ttttttgagacggagtctcactct-gtcaccaagaagggagtgcagtggcaccgtgtcggctcactgcaacctcct-tctcctgggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcacccaccaaaacatgcccggctagtttttatgtttttagtagagatggggtttccccatgttggccaggctggtctcgaactcccaacctcaggtgatccacctgcctcggccttccaaagtgctgggattacaggcgtgagccgccgcgcccggccgagttctgagagttctttaacgattctatgtattggtcttctctgcgatacacgtggtttgaaaatgttttctcccagtccctggttcgtattttcatcttcttcacgaggtctgttgcaggcaccagtttttaattttgatgaattccaatttatcaaatctccctttcatggaccggtgtcaagtctaagaGCAATTTCCCTATAGtttcatatttaagtctgtgatccattttgagttaatttttgcataaggtgtgagacttgggtcaaagttcctttgtgtttggcctatggatgtcAGAGCCTGAATCTCCCAAAGTTTCTCTCCTGCAACCCTTATTCACTGTTGTTTATTTATTGAAATATTTCCTGCAGGCCTACCCAGTGCCCAGCCTGCAAGAGATCCCGGGGGCTTGAGGTGCATGAGTGAGCTGTGCCTGCCCTTGGACCCCAAGTTTACCATCCCATCCAGAGGTTGAGGGCACCCTGGTCCTGGATACACCCCAACCCCTCCCGGGGCAGCCTTGGGATCTGGGTGTCCACGTCAGGGCCCACGAAAGAGCCACAGGGAACAGAGCCACCCGGGACCACGGTGAGACATGGAACCTCACAGTACAGAGACAGGGAGCTGGGCCCCGTCTACTTAGCCACCCTGGGATACGGCGTGGGCAGCACAGACCCTCCTGTATACTGACAACGCTCATATGAGAACGTCTGGATACACAGGGCTACACACGGACCCTCCTGTATACTGACAACGCTCAAATGAAAACGTCTGGATACACAGGGCTACACACAGACCCTCCTGTATACTGAAAACGCTCAAATGAGAACGTCTGGATACACAGGGCTacagagagtggacgggtggctccttgggctggaagcaggagctgttgtttaacaggtgcagagtttccgtttaggaagatgaaagggc-tgg s panTro1.chr6_random 681444 2250 - 67355074 tcaacctcttgacttcaggtgatccgcccacctcagcctcccaaagtgctgagatgacaggcgtgagccaccgcgcccggccCCAGCTGCCTTTTTATAGCCACACTGCCTCCTCCTCAACTGCTGGCCCtgattttggcatccgcagaatgtcgtgtaaacggaattgcagagtgcacggcttctttccctcagcatcgttcctgacaattccatcctggttgctgggcacactgctagttccttttcggtgccgagtagcatttcggagcatggatgtaccacggtttgttcccccagctgaaggatgccacggttggttccagcttgagcctctctgagtcaagctgctgtgttcatgagtgtgcgggtctgtgtcttcactctctgggataaatgcccaagaatgccatgtgatgtgttgtatggtaattgcatgcttagtttggatttttgtgttgttaagaaactacgaactattttccagagtgactgccccatcttatgttcccagaagcaatgtctgagtgatcctgtttctctacaggacagagtgctgctgtgtgtg------------ttttttttgttttctttttaaggcaggatctcactctgtcacccaggctggagtgcagtggcatgatctcagctcactgcaacctccgcctcctgggttcaagcgattctccctgactcagcctcccaagtacctgggattacaggcgcctgccaccacacctggctaatttttttttgtatttttagtagagacagggtttcaccatattggccaggctggtttcggtctcctgaccttgtaatccgcctgtctcggcctcccaaagtgctgggatttcaggcatgggccactgcgcctggcctgctgtttttcattctagctgttctgataataggtgtgtgggggtgtcttaccatggctttaatttgcattttcctactggctggtggtctgacatctttccctgtgttcactgccgtccgcatgtcctcgtggggaagtgcctcttcataacctagttggattgtttgcattttatggttgagttttgagaggttttttttttctttttttgagacggactttcgctcttgttgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctcccctctc---ggttcattcaattctcctgcctcagcctcccgagtagctgggattacaggcacccaccaaaacatgcccggctagtttttatgtttttagtagagatggggtttccccatgttggccaggctggtctcgaactcccaacct-aggtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccgccgcgcccggccgagttctgagagttctttaacgattctatgtattggtcttctctgcgatacacgtggtttgaaaatcttttctcccagtccgtggttcgtattttcatcttcttcacaaggtctgttgcgggcaccagtttttaattttgatgaattccaatttaccaaatctccctttCATGGACCAGTGTCAAGTCTAAGAGCAATTTCCCTATAGtttcgtatttaagtctgtgatccattttgagttaatttttgcataaggtgtgagacttgggtcaaagttcctttgtgtttggcctatggacgtcAGAGCCTGAATCTCCCAAAGTTTCTCTCCTGCAACCCTTATTCACTGTTGTTTATTTATTGAAATATTTCCTGCAGGCCTACCCAGTGCCCAGCCTGCAAGAGATCCCGGGGGCCTGAGGTGCATGAGTGAGCTGTGCCTGCCCTTGGACGCCGAGTTGACCGTCCCATCCAGAGGTTGAGGGCACCCTGGTCCTGGATACACCCCAACCCCTCCCGGGGCAGCCTTGGGATCTGGGTGTCCACGTCAGGGCCCACGAAACAGCCACAAGGAACAGAGCCACCCGGGACCACGCTGAGACGTGGAACCTCACAGTGCAGAGACAGGGAGCTGGGCCCCGTCTACTTAGCCACCCCGGGATACAGCGTGGGCAGCGCAGACCCTCCTGT-------------------------------------------------------------ATACTGACAACGCTCAAATGAGAACGTCTGGATACACAGGGCTACACATGGACCCTCCTGTATACTGACAATGCTCAAATGAGAACGTCTGGATACACAGGGCTacagagagtggacgggtggctccttgggctggaagcaggagctgttgtttaacaggtgcag--tttccgtttaggaagatgaaagggcgtgg a score=4030.0 s hg17.chr7_random 723667 46 + 778964 ATACTGACAACGCTCATATGAGAACGTCTGGATACACAGGGCTACA s panTro1.chr6_random 683561 46 - 67355074 ATACTGACAATGCTCAAATGAGAACGTCTGGATACACAGGGCTaca a score=21263.0 s hg17.chr7_random 723923 124 + 778964 acatggacagtgg---tgatggc-tgcaccgcggt------gtggataacgccactgcactgcacacgtaaaagtggttaaaatggtaagttttgtgttatgtgtattttaccaccataaaa--aaaaGAAAAACC s panTro1.chr6_random 683694 125 - 67355074 acgtggacggtgg---tgatggc-tgcaccgcggt-----tgtggataacgccactgcactgcacgcttaaaagtggttaaaatggtaacttttgtgttatgtgtattttaccaccataaaa--aaaaGAAAAACC s canFam1.chrUn 1781617 135 + 91062872 ACAGggacagtggggaggatggcaggcacagcagcgggaatgtgctcaacacccctgaattatgcac-tgaaattggttaaaatggtcaattttatgttatgtgtattttaccacaataaaaacaaaagaaaaacC a score=1326.0 s hg17.chr7_random 724047 3 + 778964 CTT s panTro1.chr6_random 683819 3 - 67355074 CTT s mm5.chr5 136421468 3 + 149219885 CTT s canFam1.chrUn 1781752 3 + 91062872 CTC a score=53290.0 s hg17.chr7_random 724050 148 + 778964 ATCTACAAAAGACTTCAGACCAAGGCCTCCCGAGCCGGGAAGAGGTACTTCATTGCACGTTTAATGCTTCATGCAGTATTCAGAG-CAGAGATAAGGGGGGGG-----ATGGCTCACAG-GTCCACAGGGACGTCACAGGCACAGGCGGGACACG s panTro1.chr6_random 683822 149 - 67355074 ATCTACAAAAGACTTCAGACCAAGGCCTCCCGAGCCGGGAAGAGGTACTTCATTGCACGTTTAATGCTTCATGCAGTATTCAGAG-CAGAGATAAGGGGGGGGG----ATGGCTCACAG-GTCCACAGGGACGTCACAGGCACAGGCGGGACACG s mm5.chr5 136421471 150 + 149219885 ATCTACAAAAGA-TTTAGACAGAGG-CTCCCAGGTTGGGAAAGGGTTCTTCATTGCACATTTAATAGTTCATGCAGCGCTTGGTGACATAAATAGGGGATGGAGAAGCAGGGC-CACAGAATCCACAGATAGTCCACA-GTGCAGGCACGACAC- s rn3.chr12 30488126 150 - 46649226 ACCTACAAAAGA-TTTAGACTGAGA-CTCCCAGGTTGGGAAAGGGTTCTTCATTGCACATTTAATAGTTCATGCAGCACTTGGTGACATAAATAGGGGATGGGGGAACAGGGC-CACAGAATCCACAGATAGTCCACA-GTGCAGGCAAGACAC- s canFam1.chrUn 1781755 104 + 91062872 ATCTGTTAAGGATTTCAGACCAAAA--CCCCAAGTCAGGAGGAGGTACTTCATTGCACATTTAATAGTACATGCAGCATTGAGAA-C---------------------ATCGC-AATAA----------------ACA-GGGCAGG--------- a score=0.0 s hg17.chr7_random 724198 33 + 778964 GCGACGTGGCCGGGGCTGGGTGGGGAGGGGGAC a score=6548.0 s hg17.chr7_random 724198 16 + 778964 GCGACGTGGCCGGGGC s panTro1.chr6_random 683971 16 - 67355074 GTGACATGGCCGGGGC s mm5.chr5 136421621 13 + 149219885 ---ACATGGCCAGGGC s rn3.chr12 30488276 13 - 46649226 ---ACATGGCCAGGGC a score=759.0 s hg17.chr7_random 724214 17 + 778964 TGGGTGGGGAGGGGGAC s panTro1.chr6_random 683987 17 - 67355074 TGGGCGGGGAGGGGGAC s mm5.chr5 136421634 14 + 149219885 CACACAGCGGGGAG--- a score=14544.0 s hg17.chr7_random 724231 172 + 778964 CCCACGCATCGTAA-----CCGCCAGCAGGGGAGGGGCTGCAACGAGCAGCCTCGGACCAAGGACAGCCTCCCCGGGACGCACGGGACAGGAGCAACATCAGGTGAACTGCAATGACCTCGCTTGTCTTTCGGGGGAACCCAGGAATCCCCTGGGAAGCTTCTCTGCACTGGCCTCA s panTro1.chr6_random 684004 171 - 67355074 CCCACGCATCGTAA-----CCGCCAGCAGGGGAGGGGCTGCAACGAGCAGCCTCGGACCAAGGACAGCGTCCCCGGGACGCACGGGACGGGAGCAACATCGGGTGAACTGCAATGACCTCACTTGTCTTTCGGGG-AACCCAGGAATCCCCTGGGAAGCTTCTCTGCACTGGCCTCA s mm5.chr5 136421648 121 + 149219885 ----------CTGA-----TGGTCAGCTGGAAGGG----------------------------------TCACCTAGACGTGCACAGCGGG-GCAAGAAAAGGTTGATCACACTG---TCTCATGACATGCCGGT-CACCCAGGGGACACTAAGCAG--TTGTGGACACTCATGTGG s canFam1.chrUn 1781859 144 + 91062872 CTCACGCATCACAGAAAGTCCGCGGGCAGAGGCAGGGCT-----------------------GGCAGCCCCCCGGGAGGGCACAGGGAGG--GCAAAATCAGGGTAACTGCGCCA-TCTCATTTGTACTTCAG---ACTCCAGAAACCACCCCGAGG----CTCTACACTGCCCCCA a score=0.0 s hg17.chr7_random 724403 8 + 778964 CCCTTTCG a score=600.0 s hg17.chr7_random 724403 2 + 778964 CC s panTro1.chr6_random 684175 2 - 67355074 CC s mm5.chr5 136421769 2 + 149219885 CC a score=753.0 s hg17.chr7_random 724405 6 + 778964 CTTTCG s panTro1.chr6_random 684177 6 - 67355074 CTTTCG s mm5.chr5 136421771 4 + 149219885 CTT--G s rn3.chr12 30488424 6 - 46649226 CCCTCG a score=11110.0 s hg17.chr7_random 724411 20 + 778964 GGCCTGGCTGGCTCACGTCA s panTro1.chr6_random 684183 20 - 67355074 GGCCTGGCTGGCTCACGTCA s mm5.chr5 136421775 20 + 149219885 GGTCTGGCTGGCTCATATCA s rn3.chr12 30488430 20 - 46649226 GGCCTGGCTGGCTCATATCA s canFam1.chrUn 1782003 20 + 91062872 GGCCTCTCTTGCTTTCGAGG a score=6466.0 s hg17.chr7_random 724431 80 + 778964 TCAC-----------------TGCGGGATCCAA---------GACACATT-----------TAAGGGACAAG------TCGGTTGAGCGG-GTCGGGGCGTGTGGGGCCCGCGGCT--G---GCTTGAC s panTro1.chr6_random 684203 80 - 67355074 TCAC-----------------TGCGGGATCCAA---------GACACATT-----------TAAGGGACAAG------TCGGTTGAGCGG-GTCGGGGCGTGTGGGGCCCGCGGCT--G---GCTTGAC s mm5.chr5 136421799 126 + 149219885 CCACGGTGGATGGTTTAGGGATGTGGGGTCAAGCCTGGTTTCAGTACATTATCCCCTCTTGTAAGGGAACAGAGAGACTCGGGTGAGAGGTGTTTGGAAGTCAAGGGACAGGGATTCGG---GCTTTAC s canFam1.chrUn 1782023 69 + 91062872 --AC-------------------TTGGCCAGAA---------AATACATC-----------TAAGGGGTCAT----------------GG-ACTTGGGGGTGTGGGGCCTGGGGCT--GTTTGGTTGAT a score=9143.0 s hg17.chr7_random 724511 120 + 778964 TTCTGCTTTCCCCCAACATCA-----ACTTGCCCTGGGTGGACTTTCTAAGAAAGGTGAGGACGGCCTGCTGGAGTCCCGCCAG-CCCCTCCCAAAGGAACTTCGAGCCCGGCCCCCCCTACTGGG s panTro1.chr6_random 684283 119 - 67355074 TTCTGTTTTTCCCTAACATCA-----ACTTGCCCTGGGTGGACTTTCTAAGAAAGGTGAGGATGGCCTGCTGGAGTCCCGCCAG-CCCCTCCCAACGGAACTTCGAGCCCGGCCCCCC-TACTGGG s canFam1.chrUn 1782092 114 + 91062872 ------ATTTGTCCTGCATCAGGAGGGTGCGGCCTCAGCGCGTCTCCCGGGGCAAGAGCACGTGTCCAGCGGAGCATCCGCTTGACAACTCAGAAAGGGGCT------CTGGCTCTCACAACTTGA a score=5334.0 s hg17.chr7_random 724631 56 + 778964 GTCTACCTGCGGCCGCGGCCCTGGCTCCCAAGGCAGGAGCCCCGTGTGTCTTGGCG s panTro1.chr6_random 684402 56 - 67355074 GTCTACCTGCAGCCGCGGCCCTGGCTCCCAAGGCAGGAGCCCCGTGTGTCTTGGCG a score=12807.0 s hg17.chr7_random 724687 140 + 778964 CCCGGCTTCCTCTCCAAT-TAGGGGCAAGATCAATCTCACAGCTCAGAGACTCTCCCACTCCGGCA------TCCGCAGC---------------------------------------AGGGCCCCCGGGGG---AGGTGGGGGTGCGGCGGGGTGCAGTGGCGCGGGCAGGGG-----TACACATTTGCGGG s panTro1.chr6_random 684458 140 - 67355074 CCCGGCTTCCTCTCCAAT-TAGGGGCAAGATCAATCTCACAGCCCAGAGACTCTCCCACTCCGGCA------TCCACAGC---------------------------------------AGGGCCCCCGGGGG---AGGTGGGGGTGCGGCGGGGTGCAGTGGCGCGGGCAGGGG-----TACACATTTGCGGG s canFam1.chrUn 1782291 190 + 91062872 CCTGGCCCCCACCCGACTCCAGGAGAACGGT--GCTGCCCAGGTCATGGAGTCCCCAGCTCCCGCCGTGCCTTCCGCAGCGAAGGCCAGGACATGCCACTTGACCACGTTCTTCCTCTAAGGGTTCCTGTGAGCCTGGGCCTGGGCGGGGCAGGGCTC--TCGTGCAGTCAGATGAGGCCTCCTCCTCTATGAG a score=4855.0 s hg17.chr7_random 724827 175 + 778964 AGGGGCCTTGACTTC--------------TTCG-GCCTCAACTCCCTG------CTCTCAG----------CCTCA------TCTCCC-CTGGGGGGCA--GCCCCTTTTGACACA--CTTGCCCACACTCAGA----------CCTCAATCTGGG----GGACCTGACCTCACAGGGTCACCAGGCCCCAGGGGCA-------------ACGTCCTGG------CCTGG-------------TTCTGGGG--------------------------------------------------AGGACCGATCC---------------T s panTro1.chr6_random 684598 175 - 67355074 AGGGGCCTTGACTTC--------------TTCG-GCCTCGACTCCCTG------CTCTCAG----------CCTCA------TCTCCC-CTGGGGGGCA--GCCCCTTTTGACACA--CTTGCCCACACTCGGA----------CCTCAATCTGGG----GGACCTGACCTCACAGGGTCGCCGGGCCCCAGGGGCA-------------ACGTCCTGG------CCTGG-------------TTCTGGGG--------------------------------------------------AGGACCAATCC---------------T s mm5.chr5 136422331 235 + 149219885 AGGGACCAAGAATGC------------CTTTCA-ACCTCTGTTTCTT-------CTCTCAG----------CTTGA------GTGCTCATTTGAGGACA--TCTCCATTTGTCACAATCTGTTTTACACTTGGG----------CCTAGACCAGAG----------AATCTTACAAGA---------ACCAGGGACA-------------GTGTTCTGATTAACTCCCAG-------------CTCTGGGGGAAAGCTACAAGGGTGGCCACAGCCCCACTCTTGAGACCTGGCAGGACACAGGGCCAGTTCAAGTATGGGGATCAGA s canFam1.chrUn 1782481 251 + 91062872 GGAGGAGCTGCCTTCCATCACCACAGGCTTTCACACCTGGCATCCCTGGGGAGACCCTCAGGAGCAGGGACCCTTACAATCTCTTACC-CTGGAAGCCAGGGGTCCTTGCGGGACA--CCCCCCCCCCCCCAGAGGTCACCACTCCACACTCGGGACTGTAGACCTGG--TGACATGATGCTCAGGGCCCCAGGGCATGCGGACAACTGCATGGACTGA------CCTGGCTGACCCAGCCCACTCTGGGC--------------------------------------------------ATCCTGAACTC---------------- a score=64106.0 s hg17.chr7_random 725002 244 + 778964 -CAAGCATCTCC-AGGAGACTGGCA---GGGGTGGGGTGGGCCCCCC--------------------------AGGAGAAGCCCACAGAGGCAGCCGGGGAGGCGTGTGGGGAGGAAGCTGGCCTGTCCCTTCCTTGATCTTGGGATGCATTTTGTCCGCTTG-----TCCTTTGATTTGGAA-ATGCACAAGGTGATCA-TTTATTCCAAAAAGTGAGTCCGGGGAAGGGGCAGTCCTCACGCTGCCGGG--ACCCAGCCCCACCCGGCCCACACCTCACACA s panTro1.chr6_random 684773 244 - 67355074 -CAAGCATCTCC-AGGAGACTGGCA---GGGGTGGGGTGGGCCCCCC--------------------------AGGACAAGCCCGCAGAGGCAGCCGGGGAGGCGTGTGGGGAGGAAGCTGGCCTGTCCCTTCCTTGATCTTGGGATGCATTTTGTCCGCTTG-----TCCTTTGATTTGGAA-ATGCACAAGGTGATCA-TTTATTCCAAAAAGTGAGTCCGGGGAAGGGGCAGTCCTCACGCTGCTGGG--ACCCAGCCCCACCCGGCCCACACCTCACACA s mm5.chr5 136422566 209 + 149219885 -CAAGAATTCCC-AGAAGACTTGGAGAGGGGATAAGGTGG---CCCC--------------------------AAGATAAGGCTGCAGGGGGAGCCAG-------------------------CTGTCACTGCCCTGGTCTGGGGACTCAGTT--GCCTCTTG-----CCCTTTGTTTTTGAAGAAGCACAAGATGGTTA-TTTATTCC-AAAAGTGAGTCCAGAGAAAGGGTAGGCTCCG---GGCCGGG--CACCAGCCGCACTCAGCTACTAAC-----CA s rn3.chr12 30489055 216 - 46649226 -CAAGAATTCCC-AGAAGACTTGGAAAGGGGATAGGGTGG---CCCC--------------------------AAGATAAGGCTACAGGGCCA-CTGTGGGAGCCAG----------------CTGTCGCTTCCCTGGTCTGGGGATGCAGTT--GCCACTTG-----CCCTTTGTTTTTAAA-AAGCACAAGATGGTTA-TTTACTCC-AAAATTGAGTCCAGAGAAAGGAGAGGCTCCG---TGCTAGG--CACCAGCCCCACCCAGCCACTAAC-----CA s canFam1.chrUn 1782732 237 + 91062872 ACAGCTGGCCCCTTGGCCACTG------GGGGCAAGCTGG---CTCCTGTGCCCCCAGAGACTCGGGTCTCAGAAGATGAGCCCACAAACGAG---AAGGGGGCACATGGGAAGGGGCG----CCAGCATCTCCTCAGCCTGGGGGT------------CTTGGGGGAACCTTTGCTTTTGAA-ATGCACAGGGTGATTGTTTTATTCC-AAACACGAGTCTGG-----GGGTTGGCCCTGCACTGCCGGGGTGCCCGCCTCCCCGCGGC------------CT a score=12573.0 s hg17.chr7_random 725246 63 + 778964 GCGGCTCCCGGGCCCCCGACACAGACGAGCAGGGCACGGCCACCACACTGG--GGAG----CTGGGGCT s panTro1.chr6_random 685017 63 - 67355074 GCGGCTCCCGGGCCCCCGACACAGACGAGCAGGGCACGGCCACCACACTGG--GGAG----CTGGGGCT s mm5.chr5 136422775 64 + 149219885 GCAGCTCCCAGGCCTCTGGCATAGG-AAATGGGTCACAG-GGCCACA-TGG--GGAGGCCCCCAGGGGT s rn3.chr12 30489271 64 - 46649226 GCAGCTCCCAGGCCCCTGGCATAGG-GAATGGGTCACAG-GGCCACG-TGG--GGAGGCCCCCAAGGGT s canFam1.chrUn 1782969 48 + 91062872 GCG--------------GACACAGACAAG-----CACGC-CACCACA-TGGACGCAGGGCCGCGGGGCT s galGal2.chr14 4232476 52 + 20603938 GCGGCCCACAGGACATCAGCAGACA-GGGCTGGTGGTGC-TGCCA--------GCAG-------GAGCT a score=488.0 s hg17.chr7_random 725309 18 + 778964 GCAGGGCGGGAGCTGTGC s panTro1.chr6_random 685080 18 - 67355074 GCAGGGTGGGAGCTGTGC s mm5.chr5 136422839 17 + 149219885 GCA-GGCGCAACACAAGC s rn3.chr12 30489335 17 - 46649226 GCA-GGTGGAATACAAGC s canFam1.chrUn 1783017 7 + 91062872 GCA-GG----------GC s galGal2.chr14 4232528 18 + 20603938 GCAGGGCTGGAGCTGGGC s danRer1.chr5 33145731 14 - 40038624 GCCTGGCGAGCGCC---- a score=12427.0 s hg17.chr7_random 725327 6 + 778964 TCAGAC s panTro1.chr6_random 685098 6 - 67355074 TCAGAC s mm5.chr5 136422856 6 + 149219885 TCAGAC s rn3.chr12 30489352 6 - 46649226 TCAGAC s canFam1.chrUn 1783024 6 + 91062872 TCACAC s galGal2.chr14 4237751 6 + 20603938 TTAGAC s fr1.chrUn 56269141 6 + 349519338 TCACAC s danRer1.chr5 33145745 6 - 40038624 TCAGAC a score=243372.0 s hg17.chr7_random 725333 172 + 778964 GGTGAGGGAGATGAAGCTGTTGTAACGCTGAATGTTCCTCTTGAGGATCTCAGAGCAGGGCCCCAGCACACGCTCGAAGCGGGGCCGGTCCAGCTTCACACACTTGAGGGGCCCCCGGGCCACGACAGTGGCCGCCCGGGGCCGGTTCAGCAGCAGTGCAATCTCCCCTGGG s mm5.chr5 136422862 172 + 149219885 AGTTAGGGAGATGAAGCTGTTGTAACGCTGGATGTTCCTCTTCAGGATCTCAGAGCAGGGGCCCAGGACACGCTCAAAACGAGGCCGGTCTAACTTCACACACTTGAGGGGACCCCGGGCCACCACAGTGGCTGCACGGGGCCGATTCAGCAGCAGGGCAATCTCCCCTGGA s rn3.chr12 30489358 172 - 46649226 AGTTAGGGAGATGAAGCTGTTGTAACGCTGGATGTTTCTCTTCAGGATCTCAGAGCAGGGGCCCAGGACACGCTCAAAACGAGGCCGGTCCAACTTCACACACTTGAGGGGACCCCGTGCCACCACAGTGGCTGCACGGGGCCGGTTCAGCAGCAGGGCAATCTCTCCTGGA s canFam1.chrUn 1783030 172 + 91062872 GGTGAGGGAGATGAAGCTGTTGTAGCGCTGGATGTTCCTCTTGAGGATCTCAGAGCAGGGGCCCAGCACGCGCTCGAAGCGGGGCCGGTCCAGCTTGACGCATTTGAGCGGCCCCCGGGCCACCACGGTGGCCGCCCGGGGCCGGTTCAGCAGCAGCGCGATCTCCCCTGGG s galGal2.chr14 4237757 172 + 20603938 AGTGAGAGAGATGAAGCTGTTGTATCTCTGAATGTTTCTCTTGAGGATCTCGGAGCAGGGGCCGAGCACTCGTTCGAAGCGGGGCCGGTCGAGCTTCACACACTTCAGGGGTCCGCGTGCCACCACCGTCGCAGCCCGGGGCCGGTTGAGCAGCAGTGCTATCTCGCCTGGG s fr1.chrUn 56269147 172 + 349519338 GGTGAGCGAGATGAAGCTGTTGTATCTCTGGATGTTCCTCTTGAGAATCTCCGAGCACGGCCCCAGCACGCGTTCAAAGCGGATCCTGTCCAGCTTCACGCATTTGAGCGGGCCCCGAGCCACGACGGTGGCCGCCCTGGGGCGGTTCAGCAGCAGGGCGATTTCACCTGAG s danRer1.chr5 33145751 172 - 40038624 CGACAGAGATACGAAGCTGTTGTACTGCTGGATGTTTCTCTTCAGGATATCTGAGCAGGGGCCGAGCACACGCTCGAACCGAGGACGGTCGAGTTTTACACACTTCAGCGGGCCGCGGGCAACCACGGTGGCAGCACGAGGACGGTTCATGAGCAGAGCGATCTCTCCTGTG a score=476.0 s hg17.chr7_random 725505 1 + 778964 G s mm5.chr5 136423034 1 + 149219885 G s rn3.chr12 30489530 1 - 46649226 A s canFam1.chrUn 1783202 1 + 91062872 G s galGal2.chr14 4237929 1 + 20603938 G a score=-448.0 s hg17.chr7_random 725505 7 + 778964 GGTTGAA------- s danRer1.chr5 33145923 10 - 40038624 ----GAAACATAAA a score=-4316.0 s hg17.chr7_random 725506 6 + 778964 GTTG--AA------ s mm5.chr5 136423035 8 + 149219885 GAAGGAAA------ s rn3.chr12 30489531 8 - 46649226 GGATGAAA------ s canFam1.chrUn 1783203 5 + 91062872 GGTG---A------ s danRer1.chr5 33145924 9 - 40038624 -----AAACATAAA a score=8376.0 s hg17.chr7_random 725512 14 + 778964 GAGAGAGGTCAGGG s mm5.chr5 136423043 14 + 149219885 GAAGAAAGTCAAGG s rn3.chr12 30489539 14 - 46649226 GGAGAAAGTCAAGG s canFam1.chrUn 1783208 14 + 91062872 GAGGGTGGTCAGGG s fr1.chrUn 56269319 14 + 349519338 GAGGAGGGTCAGCT s danRer1.chr5 33145933 14 - 40038624 GAAGCAAATCAGAA a score=-1974.0 s hg17.chr7_random 725526 7 + 778964 ------CTGGGCC s fr1.chrUn 56269333 5 + 349519338 ------CTTA--C s danRer1.chr5 33145947 7 - 40038624 AAGAGTC------ a score=29.0 s hg17.chr7_random 725526 1 + 778964 C s mm5.chr5 136423057 1 + 149219885 T s rn3.chr12 30489553 1 - 46649226 T a score=-3580.0 s hg17.chr7_random 725527 6 + 778964 ----TGGGCC s mm5.chr5 136423058 6 + 149219885 ----TCATGA s fr1.chrUn 56269334 4 + 349519338 ------TTAC s danRer1.chr5 33145948 6 - 40038624 AGAGTC---- a score=-507.0 s hg17.chr7_random 725527 6 + 778964 TGGGCC s fr1.chrUn 56269334 4 + 349519338 --TTAC s danRer1.chr5 33145948 6 - 40038624 AGAGTC a score=-543.0 s hg17.chr7_random 725533 9 + 778964 TGGGGG-----------TCC s mm5.chr5 136423064 20 + 149219885 TATGGAACGGCCTTTCCTTC s fr1.chrUn 56269338 9 + 349519338 TGGAGG-----------CTC a score=498.0 s hg17.chr7_random 725533 9 + 778964 TGGGGGTCC s fr1.chrUn 56269338 9 + 349519338 TGGAGGCTC a score=498.0 s hg17.chr7_random 725533 9 + 778964 TGGGGGTCC s fr1.chrUn 56269338 9 + 349519338 TGGAGGCTC a score=-3957.0 s hg17.chr7_random 725542 25 + 778964 TGAGGC---TGCAGCAGGGAAA-----GATTAT----------------- s rn3.chr12 30489554 5 - 46649226 ----------------------------GCTGT----------------- s fr1.chrUn 91441932 50 + 349519338 TGTGACCAATGAGGCAATGAAAAATACGGCGATTCAAATAAAAGGAGCTT a score=614.0 s hg17.chr7_random 725542 19 + 778964 -----TGAGGCTGCAGCAGGGAAA s mm5.chr5 136423084 19 + 149219885 -----CCAGGGGGATGCAGGGAAA s fr1.chrUn 91441932 22 + 349519338 TGTGACCAA--TGAGGCAATGAAA a score=-929.0 s hg17.chr7_random 725542 25 + 778964 TGAGGC---TGCAGCAGGGAAAGAT-----TAT----------------- s fr1.chrUn 91441932 50 + 349519338 TGTGACCAATGAGGCAATGAAAAATACGGCGATTCAAATAAAAGGAGCTT a score=-5462.0 s hg17.chr7_random 725567 34 + 778964 GTCCAGGACCCTGGAAGCGGCT--CCCTTTTAAGGa--- s rn3.chr12 30489559 30 - 46649226 GTTCACGA-TATGGAAGAGCCT--TCCTTCCA---G--- s canFam1.chrUn 1783222 32 + 91062872 GCCCGGGC-CCCAGGACGGCCCAGATCACTCA---T--- s fr1.chrUn 91441982 34 + 349519338 GTGCTGAGCTGTGGGTGGAGAT--CTTACCAA---AGTA a score=556.0 s hg17.chr7_random 725601 14 + 778964 taggatgtgccagg s rn3.chr12 30489589 12 - 46649226 TGGGA--TGCCAGG s canFam1.chrUn 1783254 14 + 91062872 TGGAATCCAACAAA a score=352.0 s hg17.chr7_random 725615 66 + 778964 cacacgtgaatttcaaacaaacttgtagcataagtatagcccgagaactatttgggatatacttat s canFam1.chrUn 1783268 47 + 91062872 TACCTGTTTACTT-----------------TGAGTATATCCCGTGGAGTA--TGAGGTACTCTTAG a score=2058.0 s hg17.chr7_random 725681 71 + 778964 gcta--atgaattgtttatt-atctgaaattcacgttcagctagccattgtcctgcacttttttgggcaatcct s mm5.chr5 136423801 70 + 149219885 CCCA--ATTACACGTTAATT-ATCTGAAATTCAAGTTTATTTAG-CATTGTCCTGTGATCTGCCTGGCAGTCCC s canFam1.chrUn 1783315 74 + 91062872 GCCAACATGGGGCTCCCATCGGTCTGCATTTCAAACTCATTGGGGCATTGCTGTGCAGTGTTGCGACTCATGGT a score=-13879.0 s hg17.chr7_random 725752 41 + 778964 GCAGGAATGCCC---AGGTGTGCCCA---GGC---CTCCCTTAGGACCCA s mm5.chr5 136423871 5 + 149219885 ACATG--------------------------------------------- s canFam1.chrUn 1783389 28 + 91062872 ATGCA----------------GCCCG---GAC---CTCCCACAGGACACA s fr1.chrUn 91442016 31 + 349519338 ---------GTC---AGAAGGCCCTAACCGGC---CCACTTCAACA---- s danRer1.chrUn 44326042 47 - 367113659 GCAGTAGTGGCCCCAGGGTGCCCCCT---GGCCCTCCACCTTGGGGCCTC a score=-7393.0 s hg17.chr7_random 725793 67 + 778964 GACCCCCAGCTGCAGGAATGCCCAGGTGTGCCCAGGCCTCCCTCAGGACCCAGACCCCCAGCTGCAG s mm5.chr5 136423876 54 + 149219885 ---CAACAGACGCTGTAATGT-------GGTCCAGGCTTCCC-CATGACCTAG--TTCCAGCTGTAA s canFam1.chr15 62541404 67 - 67237905 GGTGCCCAGGTCCAGGGAGGGCCCTGGGTGCCCAGGTCTAGGGAGGGCCCCGGGTGCCCAGGTCCAG s fr1.chrUn 91442047 61 + 349519338 AACTCCTCGTTCTCTGAACGACGCTG------CAACACCGCCGCAGAACCCTGAAACGCAGTTTTAG s danRer1.chrUn 44326089 52 - 367113659 ------TGATCCCAGCAAGCTACCCAGGGGTCCACCTCTCTC------CCTGGACTTGCAGTAG--- a score=-2197.0 s hg17.chr7_random 725860 74 + 778964 GAATG-CCCAGG-TGTGCCCAGGCCTCCCTCAGGA----CCCAGACCC---CCAGCTGCAGGAATGCCCAGGTGCACCCAGGT s mm5.chr5 136423930 58 + 149219885 GAACATTCTAGA-TGCACTCAGGCCCCTTTC--------------TCA---ACAGCTACAGGAATAAGCAG-------CTTGT s canFam1.chr15 62541471 73 - 67237905 GAGGGGCCCCGG--GTGCCCAGGTC-----CAGGGAGGCCCCAGATGC---CCAGGTCCAGGGAGGGCCCCAGGTGCCCAGGT s danRer1.chrUn 44326141 73 - 367113659 --AGGCCCCAGGGTGCCCCCAGACCCTCCTTCTAGGGGCTCCTGACCCCAGCCAGCTAC--------CCAGGGGTCCACCTCT a score=-971.0 s hg17.chr7_random 725934 2 + 778964 --AG s mm5.chr5 136423988 2 + 149219885 --GG s danRer1.chrUn 44326214 2 - 367113659 CT-- a score=-580.0 s hg17.chr7_random 725934 3 + 778964 ---AGG s danRer1.chrUn 44326214 3 - 367113659 CTC--- a score=-128.0 s hg17.chr7_random 725936 1 + 778964 G s mm5.chr5 136423990 1 + 149219885 T s rn3.chr12 30490495 1 - 46649226 G a score=-28964.0 s hg17.chr7_random 725937 165 + 778964 CCTGGGCCT----------CCCTC--AAGCCCACCCACCCCCAGCTGCAGGAATGCTGGTGGCTGATGGCTACACTGTGCCCC----CTCATCCCAGAA--GCAGGAGGCTGCCT--CCCCCAAGGTCA------------TGCCCTCTGGGGGAC-----CCCACGTCCAGGGCTCGTTGCTCCTGGGGACCCAGACCTGG s mm5.chr5 136423991 82 + 149219885 CCTGGGTCT----------CTCAC------------------------------------------------------------------------------CAGGACTCTGCTT--TCCCCCAGGTCA------------TA---GCTAGG--------------CTCCAGGACT-ATTAATCCCGTGGTCTCGGGCCAGT s rn3.chr12 30490496 143 - 46649226 TCCAGGCTT----------CCCCA------TGACCTAGTTCCAGCTGTAAGAACATT--------CTGGATGTTTTCAAGACC----CTCTTTCTTGTC--CCAGGGCTCTGCTTTCTCCCCTAGATCAG-----------CA---AGTAGG--------------CCCCAGGACT-ATTAATCCTGTGATCTCAGGCCAAT s canFam1.chr15 62541544 127 - 67237905 CCAGGG---------------------AGGGCACAGATGCCCAGGTACAGGAGGGC---------ACGGATG--------------------CCCAGGT--CCAGGAGGGCACAG--GTGCCCAGGTCC-----------------AGGAGGGCACGGATGCCCAGGTCCAGGGAG----GGCCCTGGGTGCCCAGGTCCAG s danRer1.chrUn 44326217 188 - 367113659 CCTGGACTTGCAGTAGAGGCCCCAGGGTGCTCCCTAGCCCTCAACCTAGGGGCCTCTGACCCCAGCAAGCTACCCGGGGGTCCACCTCTCTCCCTGGACTTGCAGTAGAGGCCCC--AGCCCAGGGTGCGTCATGGCCCTCCA---CCTAGGGGCC-----TCTGACCCCAGTAAG----CTACCCGGGGGTCCACCTCTCT a score=-97.0 s hg17.chr7_random 726102 76 + 778964 -CCCTGGGACTTCAATTTGGGG----GAACAGGA-CTGAGCCTTCTGTT------------GCA--GCCACAC----------TGGGGCT--------CAGCCAAGCCCCACTA- s mm5.chr5 136424073 94 + 149219885 -CCT--GGACCTCAGTTTGATG----TGACTCCAGCTGAGGCCGCTGTC------------ACATGGCCTCATGTGACATGCATGTGGCTTGCCCTAACCTCCAGATCCCACT-- s rn3.chr12 30490639 81 - 46649226 -CCC--AGACCTCAGTTTGAGG----TGACTCCAGCTGAGGCCTCTGTC------------ACA--GCTGCA-----------TGTGGCTTACCCTAACCCCCAGATCCCACC-- s danRer1.chrUn 44326405 106 - 367113659 CCCT--GGACTTGTAATAGAGGCCCCTGGGTCCCCCCTGGCCCTCCACCTAGGGGCCTCTGACA--ACAGCAAGCTACC----CAGGGTTCCACCTCTTTCCCAGGACTTGCA-G a score=-845.0 s hg17.chr7_random 726178 15 + 778964 CAAGG---CCCCAGGGAA s mm5.chr5 136424167 15 + 149219885 CTGGG---ATGTAAGGAA s rn3.chr12 30490720 18 - 46649226 CTGGGGGCGTCTAAGGAA s danRer1.chr5 33146097 15 - 40038624 CAGGACCCCTTTGAG--- a score=-2436.0 s hg17.chr7_random 726193 84 + 778964 --GCCCC-----CCAGCAGCTCCTCACCTCCAGGCCCCTCCCGAGACC-CCAAATGAGATGGCCACAGCC----GTGCGAGGGAGGGGACGCCCAC- s mm5.chr5 136424182 65 + 149219885 --GCCCC-----AT-GCAGCTACTGA-------------CTCAGGGCC-CCAAATGAGAT-GCCACATCT-------TGAGTGGTGAGACACCCA-- s rn3.chr12 30490738 65 - 46649226 --GCCCC-----AT-GCAGCTATTGA-------------CCTGGGGCC-CCAAATGAGAT-GCCACATCT-------TGAGTGGTAAAACCCCCA-- s canFam1.chrUn 1783441 75 + 91062872 --GCCCC-----CC-ACCCCACCTCA-----GGGCCCTTCCAGGGACCTCCCAGTGAGAC--ACACACCA-----TGTGAGGGCGGGGACTCCAG-- s danRer1.chr5 33146112 83 - 40038624 GGGCACCAATGGAC-ACATTTGTCAA------TGCATCTACAATGGCA-TC-ACTGAGAT----ATGTTCAGAAATGTGGCAAAAATGACACACA-T a score=0.0 s hg17.chr7_random 726277 7 + 778964 TGGACTC a score=276.0 s hg17.chr7_random 726277 4 + 778964 TGGA s mm5.chr5 136424247 1 + 149219885 ---A s rn3.chr12 30490803 1 - 46649226 ---A s canFam1.chrUn 1783516 1 + 91062872 ---A a score=91.0 s hg17.chr7_random 726280 1 + 778964 A s fr1.chrUn 56270011 1 + 349519338 A a score=3308.0 s hg17.chr7_random 726281 3 + 778964 CTC s mm5.chr5 136424248 3 + 149219885 CTC s rn3.chr12 30490804 3 - 46649226 CTT s canFam1.chrUn 1783517 3 + 91062872 CTC s galGal2.chr14 4238343 3 + 20603938 CTT s fr1.chrUn 56270012 3 + 349519338 CTC a score=99473.0 s hg17.chr7_random 726284 98 + 778964 ACCGAAGTAGTCAGAGGGTCCCAGGCGCCCCACCTCCACGTACTCCTCATTGGGGGACCGGCGCTGCAGCACGGACGCGGTGCCCTGTGGGTG--GAGGT s mm5.chr5 136424251 96 + 149219885 ACCAAAGTAGTCAGAGGGTCCAAGGCGCCCCACTTCCACGTACTCCTCATTGGGGGATCGTCGCTGGAGGACTGAAGCAGTGCCCTATGGGAG--AAG-- s rn3.chr12 30490807 97 - 46649226 ACCAAAGTAGTCAGAGGGTCCAAGGCGCCCCACCTCCACATACTCCTCGTTGGGGGATCGTCGCTGGAGGACTGAAGCAGTACCCTGTGGGGG--GGAA- s canFam1.chrUn 1783520 99 + 91062872 ACCGAAGTAGTCGGAGGGCCCCAGGCGCCCCACCTCCATGTACTCCTCGTTGGGGGACCGGCGCTGGAGGACGGAGGCTGTGCCCTGCAGATGCCAAGG- s galGal2.chr14 4238346 96 + 20603938 ACCAAAATAATCTGATGGACCAAGCCTTCCAACCTCGACGTACTCCTCGTTATCAGACCTGCGCTGCAGAACAGAGGCTGTGCCCTGGGAACA--GAA-- s fr1.chrUn 56270015 98 + 349519338 ACCAAAGTAGTCAGAGGGTCCGAGACGTCCAACCTCCACATACTCCTCATTATCAGACCTGCGCTGCAGCACAGAAGCGATTCCCTGGAGATG--GGGAA s danRer1.chr5 33146195 98 - 40038624 ACCGAAGTAGTCAGACGGTGCGAGTCTTCCAACCTCCACAAATTCTTCATTCTCCGACCGCCGTTGCAAGACCGCAGCCGAGCCCTGAGGACA--CAAGT a score=4868.0 s hg17.chr7_random 726382 6 + 778964 GGACAG s mm5.chr5 136424347 6 + 149219885 GGACAG s rn3.chr12 30490904 6 - 46649226 GGACAG s canFam1.chrUn 1783619 6 + 91062872 GGACAC s galGal2.chr14 4238442 6 + 20603938 GAGCAG s fr1.chrUn 56270113 6 + 349519338 GAAAAG a score=405.0 s hg17.chr7_random 726388 3 + 778964 ACG s mm5.chr5 136424353 3 + 149219885 GCG s rn3.chr12 30490910 3 - 46649226 GCA s canFam1.chrUn 1783625 3 + 91062872 ATG s fr1.chrUn 56270119 3 + 349519338 AAG a score=1023.0 s hg17.chr7_random 726391 5 + 778964 TGAGT-- s mm5.chr5 136424356 7 + 149219885 AGAGTCA s rn3.chr12 30490913 7 - 46649226 AGAGTCA s canFam1.chrUn 1783628 7 + 91062872 AGGGTCA a score=-3734.0 s hg17.chr7_random 726396 15 + 778964 GCCACCCAGGCGGGT s mm5.chr5 136424363 15 + 149219885 GCCAAATATGTGGGT s rn3.chr12 30490920 11 - 46649226 GCCGGGTGTGT---- s canFam1.chrUn 1783635 2 + 91062872 GT------------- s danRer1.chrUn 44326750 13 - 367113659 GCTACCCAGGGGT-- a score=100.0 s hg17.chr7_random 726411 1 + 778964 G s rn3.chr12 30490931 1 - 46649226 G a score=-2405.0 s hg17.chr7_random 726411 43 + 778964 ------GCAGGGTGGGACACACGTGAGG------------------GGTCACCCCACAGGGGGTCAC-------------- s canFam1.chrUn 1783637 42 + 91062872 ------GGCTGGGGGGGCACA-GCCTGA------------------GGTTACCCAGCAGGGGGTCAC-------------- s danRer1.chrUn 44326763 81 - 367113659 CCACCTCTCTCACTGGACTTGCATTAGAGTCCCCAGGGTGCCCCCTGGCCCTCCACCTAGGGGCCTCTGACCCCAGCAAGC a score=1625.0 s hg17.chr7_random 726454 165 + 778964 CACCCAAACCCCCACCTCCCACCCAGGTCCTTCTCCCAGAGCCACTGCCGACACCACGTCACCACCCAAACCCCCACCTCCCACCCAGGTCCTTCTCCT-GGAGCCACTGCCACCACCACATCACCACCCAAACCCCCATGTCCTGCCCAGGTCCTTCTCCAGAGc s danRer1.chrUn 44326844 133 - 367113659 TACCCAGGGGTCCACCTCTCTCCCTGGACTTGCAGTAAATGCCACAG------------------------------CGTGCACCCTGGCCCTCCTCCTAGGGGCCTCTGACCCCAGCA---AGCTACCCAGGGGCCCACCTCTCTCCCTGGACTTGCAGTAGAGG a score=470.0 s hg17.chr7_random 727164 69 + 778964 CCAGAGCTACTGCCATCACCACGTCACCACCCAAACCCCCACCTCCCGCCCGGGTCCTTCCCGCAGAGc s danRer1.chrUn 44327004 62 - 367113659 TAGGGGCCTCTGACCCCAGCAAG---CTACCCAGGGGTCCACCTCTCTCACTGGACTT----GCAGTAG a score=-577.0 s hg17.chr7_random 727400 226 + 778964 AGGTCCT------TCTCCAGAGCCACTGCC------------ACCACCACATCCAATGCTGCTGCTTCTCCCGTTCCCGGCACCTG-------------------------------TGACC--AGGGCATCTGAGCACCGCGGGACCTGCCCAGAGA-CCACCGTCCGGCCTGGCCCAGC--------TCCCATTTTTGTTCAGACACACAGCTCCTCGAAATGGAACTCACTGGCCCC------------------CCGCACCTTTGCCGAGGCGAGCGGAGGAGCCGGGAGGGGACGCGCT s danRer1.chrUn 44327066 295 - 367113659 AGGCCCCAGGGTGCCCCCTGGCCCCCTGCCTAGGGGCTTCTAACCCCAGCAAGCAACCCAGGGGTTCACCTCTCTCCCTGGACTTGCAGTAAAATCCCCAGGGTGCCCCCTGATTCTCGACCTAGGGGCCTCTGACCCCAGCAAG--CTACCCAGGGGTCCACCTCTCTCCCTGGACTTGCAGTAGAGGCCCCAGGGT-------GCCCCCTGGCCCTCCACCTAGGGGCCTCTGACCCCAGCAAGCTACCCAGGGGTCCACTTCTCTCCCTGGACTTGCATTAGAGGCCACAGGGAGCACCCT a score=3991.0 s hg17.chr7_random 727626 19 + 778964 GGGACCTTCCCTGGGGGTC s mm5.chr5 136424784 19 + 149219885 GGGATGGCCCCAAGGTGCC s rn3.chr12 30491302 19 - 46649226 GGGATGGCCCCAAGGTGTC s danRer1.chrUn 44327361 19 - 367113659 GGCCCTCCTCCTAGGGGCC a score=1486.0 s hg17.chr7_random 727645 28 + 778964 GGTATCTTTGTCACAGGGCTGCCGGTCT s mm5.chr5 136424803 21 + 149219885 AGTA-CTTTGTCCCAATGCTGA------ s rn3.chr12 30491321 21 - 46649226 TGTA-CTTTGTCACTATGCTGA------ a score=33766.0 s hg17.chr7_random 727673 210 + 778964 CCAAGCTGACCTTGGACCAACTCTCAAGGACTGGGAGCTCATCCAGCCA--TCCC--GGCCTCCCCGGGGAAAGGGGAGGGGGGCGCTGTCTCAGGGTCACATGCCTACTAAGCT--------CCCTCCTGACCCCCGACACGGGGAAGTGGGGAGGGGTCTGCGGGTTGC-CCAGATCAATGATTAACACAGAGGCCGTGGGCAGCATATCACAGGGCACCG--- s mm5.chr5 136424824 206 + 149219885 --GAGCTGACCTTGGACTGCCGTTTAAGGACAATGAGCTGTCTTAGTCACGTTGA--GGGGGGCTCTAGGGAGGCAGGGAGAAGCATGGTCTCAGGGTCACACACCTGCTTAGCTATGCAGC-CCCTCCTTACTCCCAGGA--GGGCAGT------GGGTCTGCAGATGAAGCTGGCTCAATGATTAACAGAGCAGCT----GCAACAGGTCACTGGCCCCTG--- s rn3.chr12 30491342 208 - 46649226 --GAGCTGACCTTGGACTGCAGCTTAAGGACAATGAGCTTTCTTAGCCACGTTGAAGGGGGGGCTCTAGGGAGGCAGGAAGGAGCATGGTCTCAGGGTCACACACCTGCTGAGCTATGCAGC-CCCTCCTTACTCCCAGGA--GGGCAGC------AGGTCTGCAGACGAAGCTGGCTCAATGATTAACAGAGCAGCT----GCAGCAGGCCACTGGCCTCTG--- s canFam1.chrUn 1783962 177 + 91062872 CTGAGCTGACCTTGGGCTAGCTCTCAAGGTC--------------------------GTGGTGCTCCAAT------GGGATGGGTGTGGCCTCA-GGTCACATACCCAGTGAGCAGTGTGGCTCCCTCCCGACCCCCAAAC--GGG----------GTGCCTACAGACGCCGCCGGCTCAATGATTAACACA--AGCC-TTGGCGGCCAG-CACGGGGCACATGAA a score=-2280.0 s hg17.chr7_random 727883 72 + 778964 CCGCAGCACGTGCTAC--------GCACAGATGCAGCCTGCGGAC---GGCGGGGC--TGGGGTAGCTGAATGTCCCCT-------GGACTC s mm5.chr5 136425030 64 + 149219885 ----GGAACAT--------------TAAAGACAAGGCCAGGGCAC---CCCGAGGCGTCTGGGCAACCAAATGCCTCCC-------ATGCTC s canFam1.chrUn 1784139 90 + 91062872 ATGCATTACATGCTGAAGTCTCTGGGTCTGGTGGGGCCTGCAGCCTCATCCTAGGC--AGGAACGGCTGCATCTCTGGCGTTGGGTGGGCTC a score=-1709.0 s hg17.chr7_random 727955 392 + 778964 TGGTCCCTCCAGGGCCCCAGGTGTGGAAACCGCGGCCTGGCACAGGGAAAGC--GTGGGCTGTGTGGCCAGACGGGGCT---GCCGTGTCACTGTCCCCCCTGAGACTCCGCCTGCCGGGAACCTAGGAATGTCCCGCTGACACTAGAGCCGCTGGGAAGACACACTAGAGAAGCTTCCTCTGAACAGCCGGGGAAAC--GGTCTGTCCTCAACACCAAACACCCTCAGCAGGTGTTGATGAATG-TAGCTCTGTCGCCG----GCCCTGCACGCCGCCGGCCTCAGACACTCCCCGAATTCCACTCTGAGCAGCTCTCTCTGCACCACGCTCCGACCGGTCCCTAGTCCCCGGAGGCAGGGCCCCGCGTCTGCCGCAGAAGTGCAGCAcctgcgtgaggaatg s canFam1.chrUn 1784229 283 + 91062872 TGACCCC---AAGGCTCC-----------------CCT--CACCTGCCAAGCTAGTCCCTTGTTTGGGGGAACCGGGCACCAGCCTTGTCCACACCTTCCT--ATTCTACACCTGTTGGCGG--------------------GCTGGTGCCACTGTGGAGAC-TAAAAGGGAGGCTT--TATAAACCGCATGGAGCACTCAGTCTGTGCTCCACACTGGCCCTGCACAGCGGGTATCAATAAATGGTGTCCCTCCCACAACTGAGCCCTGTATG--GCCAGGCTCAATGGCGTGCTAAATAACG----GAGC----------------CGCTGCGAGGGGCCCCCAGCTTCT---------------------------------------------------- a score=310.0 s hg17.chr7_random 728329 18 + 778964 GCAcctgcgtgaggaatg s mm5.chr5 136426209 17 + 149219885 GCAACTGCCTAGGGACT- a score=335.0 s hg17.chr7_random 728347 6 + 778964 tcacca s mm5.chr5 136426226 6 + 149219885 TCTGTA s canFam1.chrUn 1784512 6 + 91062872 TCACCG a score=0.0 s hg17.chr7_random 728353 10 + 778964 tcccatttta a score=482.0 s hg17.chr7_random 728353 5 + 778964 tccca s mm5.chr5 136426232 5 + 149219885 TCCCA a score=449.0 s hg17.chr7_random 728358 5 + 778964 tttta s mm5.chr5 136426237 5 + 149219885 TTTAA s rn3.chr12 30492960 5 - 46649226 TTCTG a score=-5811.0 s hg17.chr7_random 728363 136 + 778964 cagccggggaagct-gaggcccaggaaggt--GGCAGCACCTGCAGCCTGG---CCCTCCAGGGTCCGGAGACGGCACCATCCGGGTACCCAGGG------ATCACGTCCCCACAGCC-CCAGCCG-GCCTGGCA-----GACGGCGGCCCTCTG s mm5.chr5 136426242 133 + 149219885 CATCCACAGACACT-GAGGCCCAGGGATGTTGAGAGGTTCCTGCAACCTGGGAACTCCTCAGGGCCT----------CCGTGTGGGTGTT-----------GCTAGGTCTCCAGGGCCACCAACCATGCCTAGATATCGTGGTGCCCGCCCCACA s rn3.chr12 30492965 126 - 46649226 CATCCATGAAGACTGGAGACCCAGGGATAT--CGAGGTTCCTGCAACCTGG----TTCTCAGGGCCTCCGTGTGGGGGTTGCTAAGTCTCCAGGGCCACCAACCATATCTCGGTGCCCACCCCACAAGTCCA----------------------- s canFam1.chrUn 1784518 102 + 91062872 CTGCCAAGGGGGCT-TAAGCCCAGGGAGGA---------CATGGGCCCTCGCACCCCCTGCTGCCCT-------CAGCCACGAGGGCGTG-----------TCCACAGCCCTGCAGC--CCAGC---ACCCTGAT-------------------- a score=-11049.0 s hg17.chr7_random 728499 279 + 778964 AGAGCAGCTGCTCTTGGAGAACAAACA--------------------------CTTCAT-TTCAAGGTGGGCTCG---GTTCACCCTGGCTCACCCAGACCCAGCCTCAACAAATGC--CAGCCAGGCTGTACCTGGGTTAATGAGTAACTCCCCACCTCAT--CAGTCTGGGAGAGATGTGGGTCAGGAGA-CCCTGCTGGTGCCCGCCACGCCTAGAAT------CTCCAGGCACCAACTG-GCAGCCCCTGTGACAGCCAGACCGCTGCC-CTGGCC---CCTGATCCGG-----CCGTGGGGCCACTCGGCTCCC-------AGGCCTCTGCC s mm5.chr5 136426375 198 + 149219885 AGTTCA----CTCTCTAGGCATAGACAGC-----------------------ATTGCAT-GGCAAGGTGGACTTC---AT-CATCCAGGCTCACTCACACCCAATCTTGCCA-------CAGCCTGGCTA----------AATGAGTGACTTCC---------------------------AGGTCAG-------CAGCTGGTGCCCACAGTGCCTGGAGT------CCCCAGACACC--CTGAGCAGTCCCCG---CAGTTGGATCCC-------------------------------------CAACCTGGCTCCC-------GGGCTTCTG-C s rn3.chr12 30493091 212 - 46649226 ----------CTCTCTAGGCTTAGACAGC-----------------------ATTGCATGGGCAAGGTGGGCTTC---AT-CATCCAGGCTCACTCAAACCCAGTCTTGCTGGAGCCTGTGACCAGGCTGTGCCTGGCTTAATGAATGACTCCT---------------------------GGGTCAG-------CAGCTGGTGCCCACAGTGCCTGGAGT------CCCCAGGCACC--CTCAGCAGCCCCCCTA-CAGCTGGATCCACAAC-------------------------------------CTGGCTCCT-------GGGCCTCTG-C s canFam1.chrUn 1784620 254 + 91062872 ----------GCCTTGCAGCACGAACAAA-------------------CGTGATCTTGT-TCCAAGGCGGGCTCA---GTTCACC--GGCTCAC-----------------AATTGC--TGGCTGGGCTGTGTGCAGGTTAATGAGTAACTCCC-GCCTCACCACAGTCTGGGGGAGACA-CTGTGAGAAGA-CCCCACCGGTG-CCGCCAAGCCTGGGAT------CTCTGGGCACC-AATCAGCAGTCCCTC---CACATGGACTGCCTGTGCTCACC---CCCGATCCAG-----CAATGGGGCCACTCAGCTCGT-------GGGCGTCTGGG s danRer1.chrUn 44326546 288 - 367113659 -------GGGGCCTCTGACCCCAGCAAGCTAACCAGGGATCCACCTCTCTCCCTGGAAT-TGCAGTAGAGGCCACAGGGTGCCCCCTGGCCCTCCT---CCTAGGGGCCTCTGACCC--CAGC-AAGCTACCCAGGGGTCCAC------CTCTCTCCCTGGA-------------------CTTGCAGTAGAGGCCCTAGGGTGCCCCCTGGCCCTAAAACTAGGGGCCTCTGACACC-----AGCAAGCTACC---CAG--GGGTCCACCTCTCTCACTGGACTTGCATTAGAGTCCCCAGGGTGCCCCCTGGCCCTCCACCTAGGGGCCTCTGAC a score=6159.0 s hg17.chr7_random 728778 178 + 778964 GTGTTTATGAATCCAGCTGATGGAT-GAGCAGGACGTGTAAACAACAGACCGGGCGGCTGAGTGCCGCCACTGTGGGCAGGGGG---AGACAGGGAGCGTGCCCTCAGCCGGGTGCCCACAGACTCAG----ACCCCGGGCGCTGGAGAGAGGGAAGACT--------CCGTGGGC---------------CCCCACCCACAGGAACAG s mm5.chr5 136426573 185 + 149219885 ATGTTTACGAATTTGGCTGATGGATGGAGTGGGGCATGTAAACATGA----GTGCACTCCAGGGCTGCCAGTGTGTGCAGAGAG------CATAGGCAGTGCGCTCAGGGAG-----CACAGGCAGGG----AGCACGGGC-----AGGGAGTGCATGCTTTTCCTCACCAGGGGCCCCAACAGAGGAGAGCCCCACCTGTCAGGACAG s rn3.chr12 30493303 168 - 46649226 GTGTTTATGAATTTGGCTGATGGATGGGGTTGGGCATATAAACATGA----GACCACTCCAGGGCTGCCAGTGTGCACAGAGAGCTCGGGCATGGAGCTCATGGGCAGGGAG-----CTCATGCTGATCCTCACCAGGGGCCC---CAACCGAGAAGATT-----------------------------AGCCCCACCTGTCAGGACAG s canFam1.chrUn 1784874 133 + 91062872 GTGTTTATGAAGCCAGCTGATGGATGGCAGCAGACATCTAAACAGTC----AAGCGAC-----GCCGCCAC--CACCCAGGAGT------CGTGG----------CTGGCGG-----CG-------------GGCCTGGAC-----AACACGTGCTCCCT--------CTCTGAGC---------------CTCTA---GGAGGCACAG a score=5686.0 s hg17.chr7_random 728956 512 + 778964 CTCCCAGCTCTCCTCCCAGTCCTGGCACTGGCTCAGGCCAGACCCGGGCACAGCTCTGGGCTCTGAGGCCCATGTGGGGGCAGATGGCGGAGGGTGAAACTCCTGGGCTCTGAAGCCACCGGCCCCAGCCTTCCCATAGGTGAGAACTCTGCTT------CCTGGTCTTCA----AAGCTGTGGCCACTCTGAGAATTCGGTGCGAGAAAATTTGGTTAGCTGGGGTCTGGAGCAGGCCAAGCCCCCGCACAGGAGAGCCGCTGTGAGCGGCGTTATTTGTCTGGACAGCCCATCACGCTGACCT-----------------------------TGCGGACAGACGTCATCGATGCTCCCTTTGTGGCCATTTTTAACACTTTCTGTTTCACAGCTGGGATTATTTTCCTCTCTCAGAATCCAGGCGATGAACCTGACGGCCTCTGGTTCACAGGATTACTTGGTGAAAC-CTGGGTGTGGAGCAATG----TTCAGGTGCTTTTGACCCCAAATAGCAGAAAACCCAAATTGAGGCTGGTAAGGTCTAATAAAGG s canFam1.chrUn 1785007 441 + 91062872 ---------------------------------------------------AGTCCTGGATCCCATGGCCCATGCTGGGGGTGACAGCTGAGGGTGACATGC--GGGCTCTAATGTCATCAGCCTCAATCTTCCTGAAG--CAAGACTTTGTGCAGATCACCCGGATGCCACATGCAGTTGCTGCCACCATGAGAG-CCTGTGC--------------------------------------CCCCTGTGCCCAAG-GCTGCAGTGACAGGCATTATTTTTCTCAACACCCTGTTGTGCCAACCTAATTCTCTTTCACATTTATGTCTTTTAACTTGTGATGCACATAATCAACATGACTTTCATTCCCGTTTTAGAGAATTT-TGTTTTA-AATTGGGATCATTTTCCTCTTCCAAAACCCCAGGGATGGAACTGGAGGCCTCTGGTTTACAGAATTACTCAGTGACACTCCAGGCCT---ACAGTGTCCCTTCAAATGTTTTGAACCCCCAACACTGACAAACCCGAGTGGAGG-------GGTCT-------- a score=1609.0 s hg17.chr7_random 728956 7 + 778964 CTCCCAG s mm5.chr5 136426758 7 + 149219885 CTCACAG s rn3.chr12 30493471 7 - 46649226 CTCACAG a score=100.0 s hg17.chr7_random 728963 1 + 778964 C s rn3.chr12 30493478 1 - 46649226 C a score=382.0 s hg17.chr7_random 729464 4 + 778964 AAGG s rn3.chr12 3386672 4 - 46649226 AAGG a score=629.0 s hg17.chr7_random 729468 3 + 778964 CCA s rn3.chr12 3386676 3 - 46649226 CCG s fr1.chrUn 30994447 3 - 349519338 CCA a score=601.0 s hg17.chr7_random 729468 30 + 778964 CCACGGATCCCACAGAGCCAGAAGACAGGG s fr1.chrUn 30994447 30 - 349519338 CCACAGGTCCTGGAGGCCTATGGGTCCTGG a score=1356.0 s hg17.chr7_random 729471 27 + 778964 CGGATCCCACAGAGCCAGAAGACAGGG s mm5.chr18 9134430 27 - 91083707 CAAACCCTGCAGAGCTGCAGCTACAGT s rn3.chr12 3386679 27 - 46649226 CACCTCCCACAAGGCCGCACCTCCCAC s fr1.chrUn 30994450 27 - 349519338 CAGGTCCTGGAGGCCTATGGGTCCTGG a score=-11098.0 s hg17.chr7_random 729498 135 + 778964 GAGGCCACGGATCCCACAGAGCCGGAAGACAGGGGAGGCCACGGATCCC-ACAGAGCCAGAAGACAGGGGAGGCCACAGATCCCACAGAGCCAGAAGACAGGGGAGGCCACGGA--------TCCCACAGAGCCGGAAGACAGG s mm5.chr18 9134457 136 - 91083707 GTTGCCACCAACCCTGCAGAGCTGCAGCTACAGTGTTGCCACCAACCCCTGCAGAATCACAGCTACAGTGTTGCCACCAACCCTGCAGAGTCACAGCTACAGTGCTGCCACCAA--------CCCTGCAGAGCCACAGCTATGG s rn3.chr12 3386706 130 - 46649226 AAGGCCGCACCTCCCACAAGGCCGCACCTCCCATAAGGCCCCACCTCCC-ATAAGGCCCCACCTCCCACAAGGCCACACCTCCCACAAGGCCCCACCTCCCACAAGGCCACACC--------TCCCACAAGGCCACACC----- s canFam1.chrUn 1785448 65 + 91062872 GAGGTTAC-------------------------TGGGGTCATCTGTCAT-G-------------------------------CTGTGGAACCAGAAGACTGGCA----------------------GTAAAGCCTGGGGGCTGG s fr1.chrUn 30994477 143 - 349519338 AGGCCTATGGGTCCTGGAGGAGTACAAGTCCAGGAGGTCTACAGGTCCT-GGAGGCCTACGGGTCCTGGAGGAGTACAGGTCCTGGAGGTCTATATGTCTTGGAGGAGTACCGGTCCTGGATTCCTACAGGTCCTGGAGGCCTA a score=-726.0 s hg17.chr7_random 729633 74 + 778964 --------GGAGGCC-ACGGATCCCACAGAGCCGGAAGACAGGGGAGGCCACGGATCCCACAGAGCCGGAAGACAGGGGAGAC s mm5.chr18 9134593 74 - 91083707 --------TGTTGCC-ACCAACCCTGCAGAGCTGCAGCTACAGTGTTGCCACCAACCCTGCAGAGTCACAGCTACAGTGCTGC s rn3.chr12 3386836 62 - 46649226 ---------------------TCCCACAAGGCCCCACCTCCCACAAGGCCACACCTCCCACAAGGCCGCACCTCCCACAAGGC s fr1.chrUn 30994620 83 - 349519338 CGAGTCCTGGAGGTCGACAGGTCCTGGAGGTCTATGGATCCTGGAGGCCTACGGGTCCTGGAGGAGTACAGGTCCTGGAGGCC a score=4078.0 s hg17.chr7_random 729707 11 + 778964 CACGGATCCTG s mm5.chr18 9134667 11 - 91083707 CACCAACCCTG s rn3.chr12 3386898 11 - 46649226 CACACCTCCCA s canFam1.chrUn 1785531 11 + 91062872 CATGGGTCCTG s fr1.chrUn 30994703 11 - 349519338 TACAGGTCCTG a score=1577.0 s hg17.chr7_random 729718 8 + 778964 CAGAGCCG s mm5.chr18 9134678 8 - 91083707 CAGAGCCA s rn3.chr12 3386909 8 - 46649226 CAAGGCCG s fr1.chrUn 30994714 8 - 349519338 GAGGTCTA a score=-4542.0 s hg17.chr7_random 729718 85 + 778964 CAGAGCCGGAAGACAGGGGAGGCCACGGATCCCACAGAGCCGGAAGATAGGGGAGGGCTCC----CAGGCCCATTTCATGGCTCGGAGG s canFam1.chrUn 1785542 7 + 91062872 ------------------------------------------------------GGGCTCC---------------------------- s fr1.chrUn 30994714 89 - 349519338 GAGGTCTACAGGTCCTGGAGGTCTATGGATCCTGGAGGCCTATGGGTCTTGGAGGAGTACCGGTCCTGGATGCCTACAGGTCCTGGAGG a score=305.0 s hg17.chr7_random 729726 36 + 778964 GAAGACAGGGGAGGCCACGGATCCCACAGAGCCGGA s mm5.chr18 9134686 36 - 91083707 CAGCTATGGTGTTGCCACCAACCCTGCAGAGCCGGA s fr1.chrUn 30994722 35 - 349519338 CAGGTCCTGGAGGTCTATGGATCCTGGAGGCCTAT- a score=7830.0 s hg17.chr7_random 729803 298 + 778964 TGGcagggacccagccttgctcttgcttcctgctctgggacctcggggaggtgcaaggtcctcaatcaggtccctcatgggggcacagaggctgccgtggctccgggagtcaccacaggccacccctacaccatcagcagaaagacagaacctacctctttctcctgcacttctcccctcagcagtgagaaacccttccagaaactcctggaaacatcccctcactcctcattggccagagagggtctcacgcttgccctaaacca--gttgctggGGAATATGACCCATGGGACTGGAC s canFam1.chrUn 1785549 248 + 91062872 -------------------TTCCTGCTTCCTGCTCTGGCA------------------GTCTCA-----GTCCGTCCTGGTGGCATAGTAGCTGCCATGGTTCCAGGAGTCACCAAATGTC-TCTCTATGCTGTCTGCAGGAAG--AGAATC-ACTTCTTCCTCCTACAGCTTTCCCATCAGCAG---GAAAACCTTCTGGAAGCTCCTGGCAACCTTCTTTCACACTGCATTGACCCAAGCAGGTCAGACGCTCACC--GAGCCACTGCTGAGGGGGTGGGTG-CCAATGGGAATGGGC a score=129190.0 s hg17.chr7_random 731232 1389 + 778964 ACCCCAATCACCCCCAAACACAGCTTCACTGAGTTTCCACTGCGACGTGGGTTTGCCTGATGTGAATGCAACCCTGCAACCGGCGGCCTTCGGATAATTAGAAGGGCCTCTGGGGACGTCCAGGAACGGAGTCACATAAAGGGGTAAAACACCGTCAATAACGCGGAACAGTCTTCCGCACGGAGTCATTCTGCTTTTGGAATTTGTATTCTTAGGAGTCACTGCCAAGACGGCCGGCAGGGGCCCCACCCGTGAGGCAAAGGGGTCGGTCCCCGAGGCGTCCGCGTTCATCCCTCCCGGAAGGGGCTGTGGCGCGGCTGGACAGGAGGGGCCGAGGCCAGAGGAAGGTGTTTGGTGCCTGTGGATCGGGAACAGTTCCCCACGCACCTCCGGCACGTCGACCCTCCACCTTTAAGGTCAAGTTCATCCTTTCACCTTCTCCAAACACACCCCAGTAGAGCTGTGTCTTGAGCTCAGATGCCATGTTTCTGGAATGGAGAGGGGGACGCTGCCTCTGTCCCTGGGGCCGGGAAAGTCTGCGTCATAAAAGACACAGGTGCCTCCCCCGGCTCCCAGGGTACTGAAGAGTCCCCGTGCAAAGCTACCAAGTTCACGTGAACTAGACGCGGCCACTCAGCTGCCCCTTGCCCTCCCACAGCCGACCCCCACCTCTGACCTCCTGAGCTGCAGAGAACCAGGTGCGGCCCCTCCCACCCCCGGCCTGGGCCGGGCAGCTTCCGTTTCCAACCAGAGTCGGGGAGGAACTGGGAGGAGGGGAGCGCGGTCTCCTCAGCGGAGTCTGGTGGCCCCGGGACTCCCTCCTCCTGCCCTCCCATCTCCACCAGGATCAGCAGCCAAGGAGggaaagaggcaggaccctcagagcccagcagacctgggttcgaatcccttcctcacgtctcagccgcgtgacACCCGTGACCAGGCCCCTGGTGGAGCCACGACTCGGGAGGGCCACATGGGACAGACACCCACCCACCTGACACACAACCATCACTTCTCAAGAAAGGGAGACATTTCTCCGTTCTTTCCACCGCACTGTTGCAGGGACTGTTTGTTACAGCAGCTCGGCCTCTCTCCCTAGCTGATACACCACCCTGCACACTGACGGTGGTGACAGTCCCCGTCCTGTGCCTGCGCACCCATGGACATCTGTGCCAGATGCCTGAGTCCGACAGCAGAAAGACAGGGAACAGCAGAGGAGGGAGAAACAGGATGGACATGGACCAGGAGGGGCAGGGGTGCCGACCTCCAGCTGGCAGAATCCAGCACTCCCACGACATGGGCGGCCGCCGCAACCACCACGTACCCTCAGTTTCCGGGAGGCCCAGCTTGAGACGCACCACGGTCTCTCAAGCTGTCGAAACC s panTro1.chr6_random 519049 1389 - 67355074 ACCCCAGTCACCCCCAAACACAGCTTCACTGAGTTTCCACTGCGACGGGGGTTTGCCTGATGTGAATGCAACCCTGCAACGGGCGGCCTTTGGATAATTAGAAGGGCCTCTGGGGACGTCCAGGAACGCAGTCACATAAAGGGGTAAAACGCCGTCAATAACGCAGAACAGTCTTCCGCACAGAGTCATTCTGCTTTTGGAATTTGTATTCTTAGGAGTCACTGCTGAGACGGCCGGCAGGGGACCCACCCGTGAGGCAAAGGGATCGGTCCCCGAGGCGTCCGCGTTCATCCCTCCCGGAAGGGGCTGTGGCGCGGCTGGACAGGAGGGGCCGAGGCCAGAGGAAGGTGTTTGGTGCCTGTGGATCGGGAACAGTTCCCCACGCACCTCCGGCACGTCGACCCTCCGCCTTTAAGGTCAAGTTCATCCTTTCACCTTCTCCAAACACACCCCAGTAGAGCTGTGTCTTGAGCTCAGATGCCATGTTTCTGGAATGGAGAGGGGGACGCTGCCTCTGTCCCTGGGGCCGGGAAAGTCTGCGTCATAAAAGACACAGGTGCCTCCCCCGGCTCCCAGGGTACTGAAGGGTCCCCGTGCAAAGCTACCAAGTTCACGTGAACTAGACGCGGCCACTCAGCTGCCCCTTGCCCTCCCACAGCCGACCCCCACCTCTGACCTCCTGAGCTGCAGAGAACCAGGTGCGGCCCCTCCCACCCCCGGCCTGGGCCGGGCAGCTTCCATTTCCAACCAGAGTCGGGGAGGAACTGGGAGGAGGGGAGCGCGGTCTCCTCAGCGGAATCTGGTGGCCCCGGGACTCCCACCTCCTGCCCTCCCATCTCCACCAGGATCAGCAGCCAAGGAGggaaagaggcaggaccctcagagcccagcagacctgggttcaaatcccttccccaagtctcagccgcgtgacACCCGTGACCAGGCCCCTGGTGGAGCCACGACTCAGGAGGGCCACATGGGACAGACACCCGCCCACCTGACACACAACCATCACTTCTCAAGAAAGGGAGACATTTCTCCGTTCTTTCCACCGCACTGTTGCAGGGACTGTTTGTTACGGCAGCTTGGCCTCTCTCCCTAGCTGATACACCACCCTGCACACTGACGGTGGTGACAGTCCCCGTCGTGTGCCTGCGTACCCATGGACATCTGTGCCAGATGCCTGAGTCCGACAGCAGAAAGACAGGGAACAGCAGAGGAGGGAGAAACAGGATGGACATGGACCAGGAGGGGCAGGGGTGCCGACCTCCAGCTGGCAGAATCCAGCACTCCCACGACATGGGCGGCCGCCGCAACCACCACGTGCCCTCAGTTTCCGGGAGGCCCAGCCTGAGACCCACTACGGTCTCTCAAGCCGTCGAAAGC a score=45468.0 s hg17.chr7_random 732621 308 + 778964 TCTGGAAATAGACACTCCTGTCC-AACTCCACTTCCCAGACTGCCACGA-GGCAGCACAGACGCTCTCAGGAGGATTGAGAGTCTGGGTTTTTTTGGGCTGGAAAAACATGCTTGCCAAAACTCTAGGTCATACTCCCCAAATTTTCTCACTATTGATTCTAACCCGACTCTAAAAATAACCCAG------TGGCACA-AACCTGGGAGGAGACGCCGCAGAAC-------------------GTCCTGCCCTGG--CCGTTGTCCGCAGCAGGGGAATCACAAAGGATTCATTTTCCTTGCGACTATTTTGATTTTTTAAAATTTCCTGCAAAATCA s panTro1.chr6_random 520438 327 - 67355074 TCTGGAAATAGACACTCCTGTCC-AACTCCACTTCCCAGACTGCCACGA-GGCAGCACAGACGCTCTCAGGAGGATTGAGAGTCTGGGTTTTTTTGGGCTGGAAAAACATGCTTGCCAAAACTCTAGGTCATACTCCCCAAATTTTCTCACTATTGATTCTAACCCGACTCTAAAAATAACCCAG------TGGCACA-AACCTGGGAGGAGACACCGCAGAACGTCCTGCCCTGGCCGTTTTGTCCTGCCCTGG--CCGTTGTCCGCAGCAGGGGAATCACCAAGGATTCATTTTCCTTGCGACTATTTTGATTTTTTAAAATTTCCTGCAAAATCA s canFam1.chrUn 1786181 291 + 91062872 TCCTGGCATTAACCCTCCCGTCCGAGGCCCACTTCCCAGACTGCCGCGAGGGCAGCACAGACACTCTTGAGAAG-CTGCGAG-CAGGAATGTTCTGGGCTGGAAAAACACACTTGCCAAAACTCTAGATCATATTCCCCAGATTTC----TTAGTGATTCTAACCCTGGTCTGAAAACAAATCAGGCCACCCAGCACACGGACTGGGAG--GATGCAGGAGAAA-----------------------AGCGTTAGCACCGGAGTCAGTGGGTGAGGACCCGCTGTGTGTTT----------------TTTTGATTTTTAAAAATCTTCTTTGAAATCA a score=260.0 s hg17.chr7_random 732929 4 + 778964 GCTc s panTro1.chr6_random 520765 4 - 67355074 ACTC a score=49673.0 s hg17.chr7_random 734097 568 + 778964 caggtgcctgacgccaggagagccgagaat-cagttcagggggcggccagtgaa-ggcccagccaccagcaaagtggcctctgagctgagacctcgagggcaggaggagccagccggagaagacgtgggggccgcatcccaggccgagagaggggctggtgccacggctgggagaagaggctggagcagggggcagggccaggacgggggctcagggcagtcagaAGGGATCTGCTCCGTCTCAGGGCTGGTGGTCGCACTTCCCCATGCCCGGCAGGAGCCCCGAGTGGTGCAGGAAGGGCTCCCCGATACGAGGGGACCCCGATCTGGGGCCGACGCCAGGGAAGCACCGGAGCCCAGGCCCGCTGTGCTCATAGCCCAGACCAGAGACCGTCTGGACACCCCCCGGGAGGAGACACACTAGGAAGCCCATCTCTTCCTATGCGGGACGCCACACGCGTGTGCAGGCAGTGAGCCGGAGTCTCGAGGCTCGCTGTGGAGTCAGGGAGGCCAGGAAAAGGCACATGCACCCCAAGTCCCTTATGTGAAGTTCTACAAGAGACaaatata s panTro1.chr6_random 467873 564 - 67355074 CAGGTGCCTGACGCCAGGAGAGC-GAGATTTCAGTTCAGGGGGCG-CCAGTGAAAGGCCCAGCCACCAGCAAAGTGGCCTCTGAGCTGAGACCTCGAGGGCAGGAGGAGCCAGCCGGAGA---CCTGGGGGCCGCATCCCAGGCCGAGAGAGGGGCTGGTGCCACGGCTGGGAGAAGAGGCTGGAGCAGGGGGCAGGGCCAGGACGGGGGCTCAGGGCAGTCAGAAGGGATCTGCTCCGTCTCAGGGCTGGTGGTCGCACTTCCCCATGCCTGGCAGGAACCCCGAGTGGTGCAGAAATGGCTCCCCAATACGAGGGGACCCCGATCTGGGGCTGACGCCAGGGAAGCACCGGAGCCCAGGCCCGCTGTGCTCATAGCCCAGACCAGAGACCGTCTGGACA-CCCCCGGGAGGAGACACGCGAGGAAGCCCATCTCTTCCTATGCGGGACGTCACACGCGTGTGCGGGCAGTGAGCCGGAGTCTTGAGGCTCGCTGTGGAGTCAGGGAGGCCAGGAAAAGGCACATACACCCCAAGTCCCTTATGTGAAGTTCTACAAGAGACAAATATA a score=77167.0 s hg17.chr7_random 734665 870 + 778964 ttcattttacttaaataaatattttaggctgggcacggtggctcacacctgtaatcccaatactttgggaggccaaagaaggaagattccttgagcccaggtgttcaaggtcagcctgcgcaacatggcaagaccccatctctacaaaaagtaaattagctggacgtggtggtacctgtggtcccagctactcaggaggctgaggcaggaggatcactgcagcccaggagttggagaccagcctggctagcaaagcaggaccctgtctctaataatgacaaggtttggcggtgtccccacccaaatctcatcttgagttgtagctcccataatccccacgtgttgtgggagggacccagggggcggtaactgaatcatggcatggggtgacggttttataaggggctttccccgctttgttcagctttcattctctttcctgctgccctgtgaagaggtaccttccaccatgattgtaagtttcctgagacctccccagccaggcagaatcacaagcgattaaacctcttttctttataaattacccagtctcgggcatttcttcatagcagtgttagaatgaactaatacaaataataataataataataataataataataaatatattttaaaagaaactttgtatcacgaccataaatggaaactgctatcactttccataaattaaaaagtaactaaaagattaagcacagctggaaaGGTGTTCAACACACGAGCTTAACCCAGGCTTCCCCCTGACCTGGCCAGGAACAAATGGGACTGAGGAGGCTCCTGTCCTGCACCTTGGGCCAGGTCATCAGCACCAAAATCGGGCcgcagaccaagagtcgaagagtctgggtccag s panTro1.chr6_random 416318 855 - 67355074 TTCATTTTCCTTAAATAAATATTTTAGTctgggcacggtggctcacacctgtaatcccaatactttgggaggccaaagaaggaagattccttgagcccaggtgttcaaggtcagcctgggcaacatggcaagacctcatctctacaaaaagtaaattagctggacgtggtggtacctgtggtcccagctactcaggaggctgaggcaggaggatcactgcagcccaggagttggagacCAGCCTGGCTAGCAAAGCAGGACCCTGTCTCTAATAAtgacaaggtttggtggtgtccccacccaaatctcatcttgagttgtagctcccataatccccacgtgttgtgggagggacccagggggcggtaactgattcatggcacagggtgacggttttataaggggctttccccgctttgctcagctttcattctctttcctgctgccctgtgaagaggtaccttccaccatcattgtaagtttcctgagacctccccagccagggagaatcacaagccattaaatctcttttctttataaattacccagtctcgggcatttcttcatagcagtgtgagaatgaactaacacaAATAATAATAATaataa---------------atatattttaaaagaaacttagtatcacgaccataaatggaaactgctatcactttccataaattaaaaagtaactaaaagattaagcacaGCTGGAAGGGTGTTCAACACACGAGCTTAACCCAGGCTTCCCCCTGACCTGGCCAGGAACGAATGGGACTGAGGAGGCTCCTGTCCTGCACCCTGGGCCACGTCATCAGCACCAAAATCGGGCcgcagaccaagagtcgaagagtctgggtccag a score=47428.0 s hg17.chr7_random 735535 375 + 778964 cctcagctctgcaatgcaccagccagtctcaggcaaggcccatagctgctccagcctcagctgcctcatctgttatatgggacaacgccaaccaatgctacagagcggcggtgaggCCAGATTACCCCAGCTCCAGGA----GTTCCAGCACGTCAAACGGGACAGTCA-TCATGAGGGCGGCGGCCA--TGAGTGAACGTAAGAGTGGACAGACACCAAATGCCTTCTCAGGGCCACGGGGGCCACGACACGTTCCTCCCTCCAGTGAGACTCCTCAGAGCCTGGAAAATTCAGGCTCACTCCAGTGCCTTTACGTTTCCTGTGCACACATTTCCTGCCTGTGTGCTTCTGGACTTAGGCAGAAGCAGAATCCTatacata s panTro1.chr6_random 417173 375 - 67355074 cctcagctctgcaatgcaccagccagtctcaggcaaggcccgtagctgctccagcctcagctgcctcatctgttatatgggACAACGCCAACCAATGCTACAGAGCGGCGGTGAGGCCAGATTACCCCAGCTCCAGGA----GTTCCAGCACGTCAAACGGGACAGTCA-TCATGAGGGCGGCGGCCA--TGAGTGAACGTAAGAGTGGACAGACACCAAATGCCTTCTCAGGGCCACGGGGGCCACGACACGTTCCTCCCTCCAGTGAGACTCCTCAGAGCCTGGAAAATTCAGGCTCACTCCAGTGCCTTTACGTTTCCTGTGCACACATTTCCTGCCTGTGTGCTTTTGTACTTAGGCAGAAGCAGAATCCTatacata s canFam1.chrUn 1786994 288 + 91062872 CCCCAGCTTCACgctgtgccagcca----cagg-agggcccttcgcttcctgagactcagcctcctcttccgcaaaatggg------------aatGCCACGTACCAGC--------------ATCTTCACTTCAGAAAGAGGTGCATGCGCGGCAAGTGGGACAGGCAGTCATGATGGCAGCAGACACTTGAGTAAATG-------GAACAAACACT-----CATCCTCGTGGCCACAGAGTTCA--------------------TGGAACTCCTGGAAACCCACAAACCT----------------------------CTGTGCACACTGTTC---CCTGTGTGCTTCTGGACTTGAGCAGAAGCAGAGCGCTAGCCGTG a score=19928.0 s hg17.chr7_random 735910 258 + 778964 cacacacacgtgtgaacacacacacataca--cacagatgcatatttgtgcacgcaaacacctgcgcacacacacactggtacgtgcatacatgcacacacaccccacacacaggcacacaaacacacacacacacacacctgtgcacacacacacg--------------------ggtacgtgcatacacacatgcacacacaccccacacacatgcacacacaggcacacaaacctgtgcgcacacacctaggcacaaacacacaggcacacacgcc s panTro1.chr6_random 417548 266 - 67355074 cacacacacgtgtgaacacacacacacacacccacagatgcatatttgtgcacgcaaacacctgcgcacacacacactggcacgtgcatacatgcacacacaccc--cacacaggcacacaa--acacgcacacacacacctgtgcacacacacacgggtacgtgcatacacacactggtacgtgcatacacacatgcacacacaccccacacacat----------gcacacaaacctgtgcgcacacacctaggcacaaacacacaggcacacacgcc a score=5173.0 s hg17.chr7_random 736168 65 + 778964 tgtgcacacacacacacacacaTCCACAGAGGATGCAAGCAGCCCCTGCCTCTAAAGCACTCCCA s panTro1.chr6_random 417814 59 - 67355074 tgtg------cacacacacacatccacaGAAGATGCAAGCAGCCCCTGCCTCTAAAGCACTCCCA s canFam1.chrUn 1787282 53 + 91062872 TGTG------CACGTGCACACA--CACAGGAG-TACAC-CAGCCCATGGGTGTGGA-CATCCCG- a score=1864.0 s hg17.chr7_random 736233 60 + 778964 GGTGCTCTGTGATTTCTCCTGAATAAATAA--GCCCCATGGATGCATTTTTATGTTTTTTTA s canFam1.chrUn 1787335 60 + 91062872 GCAGCTCTGTGGCTCCTCCTGCATAGATAAGGGCTGCATGGATG--GTCTCAGGGTTTCTGA a score=-350.0 s hg17.chr7_random 736293 6 + 778964 ---AGCAAC s rn3.chr12 30498178 6 - 46649226 ---AGCTAT s canFam1.chrUn 1787395 6 + 91062872 AGAAGC--- a score=220.0 s hg17.chr7_random 736299 165 + 778964 CGTTGCAATAACTGTTTTTTCCACATGGAAGGCAATTTCACCTGAAGCTCCCTTCCACCCAAATCCCTTCCTGCTCCCTCAGGCGGTGACTCCTCGGAGCGCTCCTGAGCTGCGTGCAGGCTCCGGGTGTCTT-----GGAGGT------GACCGAGCTGTCCCTCTGCCGTTTGT s rn3.chr12 30498184 162 - 46649226 CATCGCAAT---TAAGTTTTTCGTGTGGAAGCTGATTTCGATCACAGGTGCCCTACCCCCACACCCAACCCCACCCCC---AGCCCCAACCCTGCAAAACCAGTCTG--CTGCCC-CTCCCCCCATGTGACTTTCCCTGGAGCTCCTGCTGGTTGAGTTGCCTCTCCTAC-----C a score=10496.0 s hg17.chr7_random 736464 116 + 778964 TTCGGGAGGCTGAGCCACTTCCCCGCAATCATCCCCTGC-----CCGCTCCTCAGGCC-----CGGCTGGCCGAGACGGAACTGATGTACGTCACACACCCTGGGCTGCAAACTGTCCTCGGGACG s mm5.chr5 136431883 109 + 149219885 TTAAGGAGCCTGGGCT-CTCATCTGCGAAGGTGCCCTGCTCCGCCCTCCCCTCGTGCCTTGCTCGGCTGCC--------------TGTCTGTAACATGGCT--GGCTACAGTCTGTCCTTTTGACA s rn3.chr12 30498346 104 - 46649226 TTAAGGAGTCTGGGTT-CTCATCTGCGAAGGTGCCCTGT-----TCAACCCTCATGCCTCGCTCCGCTGCC--------------TGTCTGTAACACGGCT--GGCTACAGTCTGTCCTTTTGACA a score=19554.0 s hg17.chr7_random 736580 207 + 778964 ACAGCGAAAACACACT---TCAG---CGGGCGAGCCGCCCAAGGTCAGCTCCTGTGCCAGCGTTTAATGGATCATCCATGAGGT-CTGGGGCCCGGCAAAGGCACGGCCCAGCAGCTTCCGTGGGAAACAA--------GCCGTTCCCGCGGACGTCGG-----------CGCCAGGG-------CTTGGGG----TGGGAACAGGTGCGGGG-----CTGCGTCCGCCCCCGCCTGCATGCCAGAG--TG s mm5.chr5 136431992 201 + 149219885 ACTGAGCAAACACACCAGCCCGG---TGGGCG-GCCG-----GGTCAGCTTTTGTGCCAGTGTTTAATGGCTCATCCGTGAGGT-CTGGGCTGTGGCGGAGGCACGGCCCAGCAGCTCCAGTGGGAAAACA--------GACATTAACTTGGATTCTGG-----------CGCCGCGGCT--GCTCTCAGGA----CAGGGACAGGTGC---------------CAGCGAGGGCCTGGGGACCATAGCTCG s rn3.chr12 30498450 199 - 46649226 ACTGAGCAAACACACCAGCCTGG---TGGGCG-GCCG----AGGTCAGCTTTGGTGCCCATGTTTAATGGCTCAGCCGTGAGGT-CTGGGCTGTAGCGGAGGCACGGCCCAGCAGCTCCAGTGGGAAAACA--------GACATTAACTTGGATTCTGG-----------CGCCGCTG-----CTCTCAGGA----TGGGGACAGGTGC---------------CAAAGAGGGCCTGGGGACCACAGCTTG s galGal2.chr14 4245188 222 + 20603938 ACAGTGGTGACACAAA---GCAGATCTGCTCA-GCAA----AGGTGGGCTCC-GCGCTGGGTTTTAATGAATCATCCCAGGGATACTTGGCCTTGACTAA--------TCAGTAGCTTCTGTGGGAAAACAACTGAATTAATATTCCTCCCGGTGCCAGATTTTAAAGGCTGTCTGTGCCAAGCTCTGTGGATTATTGGCAACA-ATGCACTGTTTTCCTCCCTCCGACA-TGTCAGCGTA---------- a score=1223.0 s hg17.chr7_random 736787 15 + 778964 AGGCAGGCCTGGCCC s mm5.chr5 136432193 14 + 149219885 AGGCA-GTCAAATTT s rn3.chr12 30498649 14 - 46649226 AGGCA-GTCAAATCC a score=5753.0 s hg17.chr7_random 736802 165 + 778964 CGTGTGAGACGAGCCTTTCCTTCTGCAAACCCAGTTATCCCCTCGGTTGTCTCTGCAGCCAGG--CACTGTCCGTC---CCGGGACCTACGCAGCTGCCATG-----GAAGCTCCGGTGGGTGCTCCCGG---CGCGGCCGGGGGGTGGGGGTGACGAGATGCCTGTGGCTGCGCCAG s mm5.chr5 136432207 160 + 149219885 TGTGTGAGAGGGTCCT---CTTCTGCAGAGCCAGT------CTCTGTCATAAATATCCCAAGG--CTGGATTTGTCCAGCAGGTGTATAAACAGTGGCTCTAA---TGAAGCTCC----AGAACTCCAGGGCATGTAGACATGGCATGCAGGGGTCAAGACAATGGTGGAGGCCTCAG s rn3.chr12 30498663 162 - 46649226 TGTGTGAGAGGGTCCC---CTTCTGCAGAGCCAGT------CTCTGTCACAAATACCCACAAGGTTTGGGTTTGCCCAGCAGGTGTATAAACAGTGGCTCTAA---CGAAGCTCC----AGGACTCCAGGGCATGTGGACATGGCATGCAGGGGTCAAGACAACAGCAGGAGAGTCAG s galGal2.chr14 4245446 157 + 20603938 CATTTTAGAGATTCTT-TCTTTCTACAAAGCTAGC------CATTATCTTTACTCTCTCCAAAGCCAGGAAATGTC-----------CACAGAGTCAACATAAAAGTGACTCTATAATGGGTTATTCATC---AACTGCTCGTGTTTGTGGCTGCCCTTACAGTTACGGTGCGGCCTG a score=-3639.0 s hg17.chr7_random 736967 110 + 778964 CAACCACGGTTAGGTGAGAAGCGTGGAAGGAAAGGGGCATGT----GGCTGCCCGGGC-----------CTTGCCCTCAATGCCC-----------------------------------TTCTGTGGCCCAGTTACTCCCGGC--CATCTG------TGTGGGAGTC s rn3.chr12 30498825 81 - 46649226 ------------ACTGAGA----TGGTATGTGGGTAGCAGTG----GCCAGGCAGGGC-----------CCTGCTCCACACACCC-----------------------------------TTCTACGGCTCAGTTCCCCTCCCC---------------------ACC s galGal2.chr14 4245603 161 + 20603938 ---CTCCCACCTACAGACA----TGGGACGCAGGGCACAGAGCACACGCTAACAGCGCACCTCCCTCACCCTGTCCACCAAATCCTCTCTGGTGAAAATCGGTTTTAGCTGCTGATGTTGTTTTACGGCCCAATTACTCCTACCACCATCTGCTTCTTTGTGAAAACA a score=422.0 s hg17.chr7_random 737077 3 + 778964 TCT s rn3.chr12 30498906 3 - 46649226 TCA s galGal2.chr14 4245764 3 + 20603938 TTC s fr1.chrUn 246498855 3 + 349519338 TCT a score=-18057.0 s hg17.chr7_random 737080 85 + 778964 GCAGGTTCCGGGG-AACCAGGGCGAGCACAGGCCCCAGGC---TAC-------AGAGGCTCCT-----GCTGCCT------GCCA-----GGCGGGGAGGTGGGGGCAGCCA s mm5.chr5 136432434 47 + 149219885 ACAGCCTCAGGAA-AACTCAGCCAAGCA---------------------------------------------------------------GAGGGAAAGCTAGTGTA-CTA s rn3.chr12 30498909 90 - 46649226 CCATTTGCTACAG-AAGCAGGCTGCACACCAGCCCTGCACA--CAG-------ACAGCCTCAG-----GAAAACTC----AGCCAAGC--AGAGGGAAAGGGAATGTA-CTA s galGal2.chr14 4245768 108 + 20603938 GTAGATACTGAAGTAACCAGACCAAGCAAAAGTCTGAGACAGGCAGCATCGTTAAAGTCTCAG----CGCTAATGCTGTGAGCAGGGCTGGGCCGGCAGCTGCAGACAGCCA s fr1.chrUn 246498858 87 + 349519338 GCAGCAGCAGCAG-AACCAGAACCAGAACCAGCACCAGCC---CGC-------GGACGCGCCGCGTCCTCCAGCTC--------------CGCGGCGAGAAGAGCGCCGCTG a score=0.0 s hg17.chr7_random 737165 4 + 778964 TTCC a score=46.0 s hg17.chr7_random 737165 4 + 778964 TTCC s mm5.chr5 136432481 4 + 149219885 GACT s rn3.chr12 30498999 4 - 46649226 GACT a score=-1031.0 s hg17.chr7_random 737169 137 + 778964 TGCTCCAGCCCCAGGCACCTCTCAGGGTGGGTGGGTGGGAGTGCTCACTG-----CCTGTGGTTTGTGTGGCTTCAACCCCAAGCGTCCCAGTGAGGGCCCTGTCGCCTCCAGCTCCACAGGCCCAGCC---CAACTCCTCGTCT s mm5.chr5 136432485 125 + 149219885 TGCCCTGGGTCGATGCTTC-CTGGGGGTGGGCATGAGCCTGTGAACGCCA-----TCTGTGGAGCCCGGGGCCTT--------GCCTCTTGGGCAAGGCCTAGT-GTTTGCTTCTGAACA--CATATCC---CAGCTCATCCTCA s rn3.chr12 30499003 116 - 46649226 AGTCCTGGGTCGCTACT----------TGGGCAGGAGCTACTGAGCTCCG-----TCTGTGAAGCACACGGCCTT--------GTTTCTTGAGTGAGGCCTAGT-GTCTGCTTTCCAACA--CATATAC---CAGCCCATTCTCA s fr1.chrUn 246498945 131 + 349519338 CGCTCAGGGTCCATTCAGCCGGACAGAAGGACGGAAGGGTTCCGACCCCGGGGCCCCTGTTGCCCCTGTTGCCCC--------CGCTGCAGAGGAGGGTAT----GTTTAGGATCCATGG--CTCAGCCAGTCAGTCCTGCGTCT a score=-13350.0 s hg17.chr7_random 737306 1553 + 778964 GCCCCCATTAGGCATCTCTGTCCACAGGACTCCT--CCCAGACGACGGCA-------GACACCTCCCTCGGCCTCACCTCC-------CAACCAGG-----GGTCACCAGCACTGAGGA----------TTCTGCCCCCTGCA----GAGCCTGGAACGCGTCCCTTCCAGCC--CTCTCC----------ACCAGGCCTGCACTCATCACCTGCAGGTGGGCCAA------GCCCCGGCCTCCA---GGGCCTCTC-----ACACCCTTT-------------CCTCCATTACTG------------------CCCCTCCATCTGCCTGGTCACACCAGGT-----------TCCAGAAA-----GAGCTCTTAAAGG-----GTCTCTGTCACACACA-------GATCACAACCAATCTGCCCATCAT--AGCTTTG--CGGCCAGCA--------GCATTTCATCTTCCCTCCAGCTG-TTCTCTTCCTCCCT---GGATCTTCTTTGCAAGGCCATGGGGTCCA---TGCCCC--CCAACCATGACTCCCTCCACCATGCTGACCCCCGGCCAGGATGT-CCTGACCCCAGCTGA-GATGCCCAGACACCAGCAGAGATGCCCTGACCCTCGCCCGCCATTTCAGCTGT----------TGCTTTCTCAGCCAAGTCTCAATCTTTGGATGAACAGACATTGAGTCCTTCCAGGTACTGACCAGGGTGCTGGACACCAGAAACCTAACGGGCGCT----GATGAAATCTCCACTGTGACTTCACAGCAACCCCAACCCTTCCACACACCAGCACCTCTCATCCCAGGAGAGCCTGGGCCCGG-AACTGACACGGCTTCTGCTTCCTGGGATCAAACATGCCCCCAGCCCTCCAGGCAGCCAC-------CAGGGCAGGTGCAGGTGGGCAGGCACCTAGACCCAACCCGGAGCTGATGCCCCGTGCCCTCGGCCCC-------CACCCTGAGGGTCCTCTGAGAGCACCTGCCAGGTCAGGCTGCAAGTCCGCCCCAGGACCCCCTCCACGGGATACCCCAGTTTTCTTTTCCA---ATGAG----CCTAAAAACCCTCCACAGGCTGCCTCTGCAGACACCATTCCTTAGGCCAGAAGGGAAAGGAAAGGAAGGGGTGCCACTGCTGAGAGCCCAGGCTGTGCACTGTCCACTCAGCAGGCGTCCAACAGCCCCCCGGCTTGGGTGGGCCAAGACCCACAATGTCCCAGCCCCAGGGGG---CCCCAAGCTGCTTCAGCCTCTGCAACCTCTGCACGCTGGgtgtgtgtgtgcatgcatg--------tgtgcacgtgtgagtgc-------------gtgcacaggtgtgtgtat------------gggtgtgt-tattgtgtgcacaggtatgtg--------tatg--cactgtgtgtgtgcatgtgtgCCAGAACAGAAGT-----------Ctgtgtg----------agcat----g---tgtgcacgtgtgcatacatgca-----tgtctgtgcggtgtgtgcatgtg-tgtgtgtgcatgggtctgcttggagtgtgtatgta--cgtgtgtgtgctc---------aggtgtgcatgca---tgtctgtatgtacat---gtgtgtacgtgtgtgtgcacaggtgtgcctgtgtccatg---tgcacacggatcagtgtg-------tgtgcatggg-ttgt------gggtgtgca--------------------tgggttgtgggtgtgtatatg--------tgcatgtgtgcacacgtgtgc-----atgggtgagtatgtgc--gttggtgtgcatgggtgCACACTGGCTGATTATGT s mm5.chr5 136432610 1535 + 149219885 G--ACCATCCAGC-TCCCTGTATGCACAACTCCCAGCCCAGATGACTCCACATCAGTGGCTCCATCCCTG--CTGACCTCCACCAAAGCACCCACAT-CCTGGCCACCATCATCAGTGACCTTTATCTTCTCTGACCTCCCCACTTTGA---TGGCCCACTGTCCTTATGACTAGTGCCCC----------ACC---CCTGCTACCCTCCCCCATAGATGGACCCCCTTGCTGACCCATCCTACAGATGGACCCCTC--TTGATGACTTTTCCAAAGATGGAAACCCCCTTTGTTG----------------ATCTCCCCTGTCTGGGCTGACACACCCAACAACCCCTGCCATCCAGAAGTCACTGAGCCC---AGGGATTCTGTCCCTGTCACCTCTA----CCCTACCCCACGCCATCTGACTTTCTTCCACCCCTGCCCAACTAACAAAGAGTTCGCAGGTCA----CCTTCCATCTA-TTCTTTGCAGCCTTTGAGGGTCTCCT---------CAGAGGGTGC----TGCTACAACTAACTTTG-----CCCCTTCATGTC--CTGCCAGGCTGGATGTGCCTGAAACC--------CTTCTCCTCAACCAGCCATGGTGTCTTGAGCC----------------CTGT----------AGTCACCTTGACTAAG-------------------------TGAGTC--------------CCAAGACG-TGGATGCCA-----TTTATACACCCTTATAGATTAAATAT-------------------------ACCCTCTCCTACTCCTA---CTTAGAACCCAGGAGA-------------------------TCCTGCTCCCAGGATGCAAGCTTGTTCTC-----------CAAACACAGCTGGGCAGGGCATGTACGGGTAGACCTTTGATTTGACACAGCCTAGAACTAAGGTCCCACATCTACAAGTCT--------------AGAGTACATTAGGTG--CCTGGTAGGCACAGCTTTGTGTCTCT-------------------GTCATACTAATTTTCTTTGCTAGAGATGAGGGCACTGGCCAGTCCCCCACAGA--GCCTTTCCACCCAACAAGACTCCTGCCAGATAGG--AGAAACTCAAATGGAGCC-CTGTGGGGATCT--GGCTGTTCACT----------CAGAGATCC-ATAGCCACCCCAAT-------GCCCAGATATCAGCTCTTCCAGCCACAGAGGAGATCTACCAGCTGCCCCAGA--CTGCAACC-CCGTGTGCTGTGTGTGTGTTCACATGAGTGTA-TATGATGTGTACGCAAGAGTGTGGTTGCTGTTTAAGGGCACACGTGCATGTATTGTGTAAACATAGAGTGTGTGTGCTATGTGCACAAGAATGTGAGCTTCTATATG-ATACTGTGTAGGTATTTGCATAC----ACACAAGT-----------GTGCATG---CAATACAGGTAT----GCTCTGTGCATGAGAGAGTTCCTGCT-----GTTCTGTGCATTGAATACAGGCACTGTGCTCATATACACTTGTGTTAAGTGTGCATGTGATTGTGTGTGTGCTCTTTGTGAAAGAGTGTGCGTGCA---TGTGTGTGTGTATGT---GTGTGGGC---TATGTGC----GTGTGATTGTGTGC-TG---AGTGAATGGATCCGCATG-------TATGAGTGTG-TTGTGCACAGGGGTGTACAGACAAGTTTGTGCAAGTGATTGTGTGTTGGGTCTCTGTGTGATTTGTATTGTGTGTATGTGATTGTGTGC------TGGGTGAGAA---------TGGTGCACATGCTCACATGCTTTCTGCATGTGT s rn3.chr12 30499119 1478 - 46649226 G--ACCATCTAGG-TCTCTGTATGCACGACGCCT--CCTGAACAAT-----------GGTTCCTACCGCAG-CTGACTCAG-------TGGCCCCATCCCTGCTGACCTCCACCAAAGCGCCCACATCTGGCTGACAACATCA----G----TAACCCTTCTCTTCTCCGACT--TCCCCCCTTTTGATGGCCC---ACTGTCCTTGTTAACAATACCTAGCCCCT---GCTATCCTCCCCCATAGCAGGACCCCCTTGTTGACCCATCCT------ACAGACTTTCCCATTGATGGAAACCCCCTCTTTTCATCTCCCCTGTCCTGGCTGGCCCACCCAAT---------------------------------AACA--------CCTGCCATCCAGAAGTCACTGAGCCCAGGGATTCTGTCCCTGTC--AACTCTACTCACC--ACA----GTCCACACCCCA--TGGCCCCCATCTGACTTTCTTCCTCCCC-------TGCCTAACCAA---CAGAGAGTTCACAGGGCACC----------------TTCCATC-TACTCATTGCGGCCCTTGAGGG-TCT--CCCCAGAGGGTGCTGCC-----ACAACTAACATTACCCCTTCCATCTCCTGTCAGGCTGGATGTGCCAGGAACCCTCCTCCTCAACC-AGCCACAATCATATGGGCACAGTGCCTGTAGTC-------ACTCTGACTGAG----TGAGTCCCA----------AGACGTG----GATGACACGT---ATGTACCATTACAAATTAAATAGACCTCTCCTACTCCTA---CTTTCAACCCAGGAGAACATGCCCCAAGCAGGTAA------GCTTGTTCTCCATATGCA------------------------------GTTGGGCAGGGCATGTGCAGATAGGC-----CTCTGACACAGCCTAGAACTAAGGTCTAGTAGGCACAACTTTGTGTCTCTGCCCTGCTAGTTTTC--------TTTGCTAGG----GCTGAGGG--------------------------------------------CA------------CTGGTGAGTCCTCCACAGGGTACCTTTCCACCTGGCATTCCTCCTGCCAGACAGGGGAGAAACTCAAATGGAGCC-CTGTGGGGATCT--GGCCGTTCACT----------CAGAGATAC-ATAGGTACCACAATGCCC-------AGATGTCGGCTCTTCCAGCCCCAGACGAGGTCTACCAGTTGCTCCAGC--CTGCAGCC-CAGTGTCTTGTGTATGTGTTCACATGAGTGTATTATGATGTGC-------------------------ATGCAAGAGTGTGGGTGT-----------------TGT-TTATGGGCAAACACGCATGTA-------GTATGTAAACCGTGTTTGTGC---TATGT----GCACAAGTCATGTGAGCTGCTGTGTGATGCTGAGTGGGTATTTGGGCTATGTGCACAAAAGTGTGCATGTAATATGGGTGTGTGCTGTGCGGATAAGTA-TGCATGAGAGAGTGCCTGC-TGTTCTGTGCATGAA------TACAGGCAC----------GGTGCCCATATGATTTATGCGTTGGTATGTCAAGTGTGCATATGACTGTGT----GTGTGCCCGTGCGC-TGAATTGTGCATGCATGAGTGTGTGTGCTATGTGCATGGGATTGTATGCT-GGGTATGTA--------------------TGTGATTTGTA-CTGTGTGTGATTG----TGGAATGGTGCACATGCTTCCTGCATGTGTGTGAGACTGTGTTAAATGG-GTGGGTGGGCAGACAGTGTATGCACATGT a score=3257.0 s hg17.chr7_random 739253 386 + 778964 ccgccagcctcaacctc---cgcccttgctccCTCTGGGAGGACTCTGTGTTCCCAGCAATCCTGG---CCCTGTCTCCGTGGCTCGAAGCTTTGCACTGCCTTCCAGGCAAGCCTGTGGCTCGGAGCTTTGCACTGCCTTCCAGGCAAGCCCACGTCCTCTCCACGTGGGCAGTCA-CACACTCAGGTCCCCGCCCCACCGCATTCAGGCCCTCGACTCCAGCCACAGTGACA--CCTCTGTGCCTCTGCACACAAATGTTCCC-TCAGCCTGGAGGGCATTCCTAG-GCCTCTTCCCGCAGCATCCCCAGAAACTGCCCAGGGCGCCAGCACTGACTCCGGCAGTGCCCAGATGCATCTATAAATCCTCACAGCTCAGGGGAGGGGGGATCGGCC s canFam1.chrUn 1789158 325 + 91062872 CCATCTGCATCTATCTCATGCCCCTTCATGCCCTCCGGGGCTCCTCTGCTTTCTGCACCCTGCAGGGAACACTGTATCCCAAAC----AACTTAGGACTATCTCTC---------TATAGCTTGATGCTCTCCCACACCT-CTGAGAAAGGCCACGTCCT---------GACCGTCAGCACTTTC---TCCCCACCATGCC------------------CCAGCCAAGGTGACAGgcctctgagcctttgcacacac-tgttcccatctgcctggaGGCTGTTCGCAGAGCCTCTCCCTGCAGAA-CTGTATTTACTCCCCAAGGTGTGAGTG-------------------GAGGCCTCTCCAAA-CTGTACAGGTTGGGAGACATGGGA------ a score=-9250.0 s hg17.chr7_random 739639 271 + 778964 GGCCAGGACCAACAGGCCCAGGGCCCAGGGCACTGGCCCCCAAAAGCACTTCCAGAGTGAA-CTCCCGAGACGAACA----CATCAGCTTTGGAGGGAGGAAGTGTTGCAGGCGGATGCCCCCCAACCTT-------GCATCTGGG--ACGGGAGCCCAGGGGTATTTTTCCACCATCCCTGAGTGGAGATTTATTGAGCTGCCCATTCTGGGAGCCACTGTCTGGGAA-------CCCAGGAGTGACAACTGACAGGTGTTCACATT--CACCTGCCTGG-CGACTTCCTGGGC s canFam1.chrUn 1789483 140 + 91062872 ------------------CAGGGC--AGGGCGTGGCACCTGGCACGTCCTTCTAGAATGA-----------------------------------------------------------------------------GCATATGGA--AGTGGAGCCCAGG-----------------------------------------CCCATCCTGGCTGC-----TCTGAGGAGGATGTCCACTGGAGCCTTGGCTGCCGTGTGT----------ACCTGCCCAGATGCCTTCCTGGGC s galGal2.chr14 4259743 240 + 20603938 GGCCTGATCCAACAACCCCAAAGCACAGGCAATTCTTCCACCAAAGCA---CCAGGCTGCAGCTCCAGCTCCTAACAGGAGCACCAGC---------------AGAAGCTGCTGGGCACCCTCCAACATTACCCTCCTCTCCTGGGCTACCGCTGCTCTGG--AATTACCCCAGCATCAGCAGAAGA---------------CCC--TCCGGGGTC-----TCTGA----------ACCAGCAGCACCAGCTCCCAGGGTCCCCCCTTTACACCCCTCCAT---AATTTCTGAGC a score=4677.0 s hg17.chr7_random 739910 918 + 778964 TTCCACCCAAGGAGGG-GTGATTGGAACTTGCACAGCCAGGAGTGGAAGGAGGGTAAACCTAACCACACGCTTCACTTCATTCCTTCAGGGTTTCGCAGGAGACTGGAATAAGATCGGAATAATTCCAACAGATGCTCCAACCATCCCTCATGGACCACACGCACTCTT----GGATGCTGAAGAGCAGGCTGGGGTCTGGGGCAGCCTTTAGGGGCTCTTGGGACCCCAAAGGTGTCCAGCTTGGATGTCTCCAGCAGATCTTTCTGGAAATCTGG--GACACCAAGGAGGAGCACAAATGCTGGTCTTACTACTAAGCAATATGTCCCTCGGATCCAAAGGAGAGCAGGTGACCTGGGTGCAGCCACAGCCAGCTGCCACCTCCCTGGAGTCCCTCATGAAGCAATGCATTCAGGGCAGAATCCATTGCTGCCTCAGCCCCCTTCAAAGACCAGGCCCAACACCGCACCAGCTCCTTGGACACTGCCCATCTTCCCAGGGAGAGTCTCGTGCTCAGAGAGGCTATAAATATACGCCGGAC-AGTCAAGAGTTTC-------CGTCGCCAACAGAAG-AGCTGAGCAAAAGGTGAAATAAACATCCCGTGGCTGCAAATTAATTGATTTTTATCTTGCCTGAATTGCTATTTAAAACTGGTCTGGTGATTGTGGGGAGTTTCTGAAGGACTCAGCAGGACA--GATGAGGCACACGGGACGTTTTCTGGGCCCCTGCGCAGCTGCGGTGCTTGACTGGGGTAGCTCAGGCTCCGTGaggatctggacttcagacttggcc--cagctg----ggtggctaaggacatgctacctcacttctccaagtctcagtttccccactgtaaaataatataaacctatccagaatcc-accaggttctggggagatttaggcaaggatgtgggtacccccggaacact s canFam1.chrUn 1789623 701 + 91062872 TTCTGCCCGAGGAGGGAGTGCTTG---CCTTCATCACT-------GAAGAGGGGTGAGTCTAATCCCAGGCCTTCTTTTACTCCATTACGGTTTTGCCAGAGGTGGGAGAGAGGCAGGAG--------------------------CTTGCTGACCCAGGGGTATTCCTGCAGGGACTCTGGACAGCA----------TGGGTGAGGCT----GGGCTGTGGGG--------GGCGGGCAGCTC---CACCACCAGCAGCTC-ATCTGGAAGCTCGGCTGCTTCCAGGGA----CTCAA----------------------------CCCTTAGACCCAAAGGAAGGTGGGTGA------------------CAGCTGCC--------GGGGAC-----TGCAGAGTTGGGCCCAAGGCAACG-----------CTCATCATCCTTCA-----------------------------------------------CCTGGGGCAAGCCTCAAGCCCAGAGAGGCTGCTAAGACACACAAGATGGGTCAGGAAGGTCAGAAGCGTGGCCCCAGCCCAAGTCCCTGAGCAAGAAGCAGAATTAACCAGTTTTTTTTTTTTTTTAACCAGTTTTTATCTCTCCTAATC-----------ACTGGTC-----ACTGTGAGGAA-CTCTACTGGGGCCATCAGGACAATGGGGAAGCAGGGGGGTGGGTTTCTGGGGGCCT--GGAGTCATGGAGCTGGCCTGGGCCACTGTAGGCACCATGAGGCT-GGGACTTCTAACCTGGCCGGCGGCAGAGCTGGCAGCTCAG--------ACACTGCTTCTCCTGGCCC--GTTTCCCC-----------------------CCAGGCTCTGGCCAGGCTCCAAGG------AAGCATGGGTGTGAGCATCATTGGGAGGCT a score=581.0 s hg17.chr7_random 741097 65 + 778964 GGCTCCTTCTC-TGTCCTCCCAAATTCCTTTCCACCGCTCC-----ACGGGTGCCAT----GTCCACCTTGGTCC s canFam1.chrUn 1805837 75 + 91062872 GGCTCCTCCCCACCTTCCTCCAGACTTCCCACTGCTGCTCTCCCATGCCAATACTATCTCAGCCCAGCAGGCTCC a score=3456.0 s hg17.chr7_random 741162 55 + 778964 TTGTCTGCTTCCCATTGACTAGCAGGGGTA----TGTCAGGTGCCTGAGC---------------TCAGAAATG s rn3.chr12 30523309 66 - 46649226 TTCTTTGCTTCCTGTTCGGTTACAGGAGAA----CACCAG---CCTGAGACAAGCCCCT-AATCATCAGAAATG s canFam1.chrUn 1805912 71 + 91062872 TTGTCTGCTTCCCACTGAGACACAGAGGGAGGGCTACCAG---CCTCAGAATGACTCCTCCATCATGAGAGATG a score=28955.0 s hg17.chr7_random 741217 272 + 778964 GGGTCAGACACCCCTGCAAACAGCTGCTGACCCAGCCCTCGTCCTCAGCAGCCCCCACCACTGCCAAGATTCCTCCTCCTCCCAGAAGGTGATGACGATAAGCA---CGGCT--cactatgctgaatgctccccagcaatcaggcacctcccgagatccacact----------ttcagct-gagcctactattatctccactctatggaagaaacagaggctcagggtcgg--tgtggcctgcctatgcccaccgagctgctaagtgctgaggccaagaactgaaacgg s panTro1.chr6_random 67011502 272 + 67355074 GGGTCAGACACCCCTGCAAACAGCTGCGGACCCAGCCGTCGTCCTCAGCAGCCCCCACCACTGCCAAGATTCCTCCTCCTCCCAGAAGGTGATGACGATAAGCA---CGGCT--CACTATGCTGAATGCTCCCCAGCAATCAGGCACCTCCCGAGATCCACACT----------TTCAGCT-GAGCctactattatctccactctacggaagaaacagaggctcagggtcgg--tgtggcctgcctatgcccaccgagctgctaagtgctgaggccaagaactgaaatgg s rn3.chr12 30523375 203 - 46649226 -GGGTGGGCAGCTCTATAGATTGGT----ACCCAGAGGCACCAGTCCGCTGCACCCAGCTCCTCCCAGGAGCACTCTTCTCTCAGAAGG---TGGCAAGAAGCA---TAGCTGAGACCTTGCCCCATGCT--------------------CTGAGA--------------------------GATACTGCTA-TACCTCTACTAGATTG--GAAACAGAGGCACAAGCTC---------CATTCC--TGTCCAATGAGCTG----------------AGGATTGAAATCG s canFam1.chrUn 1805983 252 + 91062872 GGGCTGGAGACTTCTGCAAACAG---------------------------ACCCTCAGCACTACCAAGAAGCC----CATCCCAGGAAGAGGTGAGCAGAAGCAGCCCAGCTGAGACC-TCCCAAGTGCTTCTAGGA---CTGGCACCTCTGAGGATCGGCTCTGTCcaaccacctcagctagccactgttacagtctccactctatagcaggtgtggaggctcagagagggatcataacctgcttgtgtcca-cgtgccactaagtgtggggtc--tgggtcaaagcag a score=7123.0 s hg17.chr7_random 741489 59 + 778964 gacaatcttgttccagaatggatgctcgcacggccaggccccacactgtccTGGAGACA s panTro1.chr6_random 67011774 59 + 67355074 gacaatcttgttccagaatggatgctcGCACGGCCAGGCCCCACACTGTCCTGGAGACA s canFam1.chrUn 1806235 44 + 91062872 ---ggtgttgatgcagaattggtgttcatgc------------cacggagctgcaGACA a score=0.0 s hg17.chr7_random 741548 28 + 778964 ACAAGGTCATCCCGAACCTCCACTCACA a score=664.0 s hg17.chr7_random 741548 7 + 778964 ACAAGGT s panTro1.chr6_random 67011833 7 + 67355074 ACAAGGT a score=1989.0 s hg17.chr7_random 741555 21 + 778964 CATCCCGAACCTCCACTCACA s panTro1.chr6_random 67011840 21 + 67355074 CATCCCGAAACTCCACTCACA s rn3.chr12 30523833 21 - 46649226 CATTCCAAACTGCATTCTCCC a score=1160.0 s hg17.chr7_random 741576 6 + 778964 CACTCA s panTro1.chr6_random 67011861 6 + 67355074 CACTCA s rn3.chr12 30523854 6 - 46649226 CACTCT s canFam1.chrUn 1806279 6 + 91062872 TGCTAG a score=47500.0 s hg17.chr7_random 741582 309 + 778964 GCATCTTATCTGCTCTGGAAGAACAGAAGTGGCATCCACAGAGCACCTACCGTGTGCA-----CGGCACCACGTCATCATGCTGCACCCTCACGTGAGACTGGAGAAGGGCA-GCTCAGAG---------CATGCAACGTGCCCAGGCTGCCCGGGACAG----AGAGAGGAGCCGGGACGATCCAGCCCCTGGATGTTGCTTTCA----TGATGCCAACACCAAGCCCACG----GCCCTGTGAGGGTCAGGCAGCTGGGGCAGCTCTGGACATGTTCAATGGCACGGGGCCACTTTCAGACGGAATCTGCTGCA------GGGAGAGGGGGCTCAACAC--C s panTro1.chr6_random 67011867 309 + 67355074 GCATCTTATCTGCTCTGGAAGAACAGAAGTGGCATCCACAGAGCACCTACTGTGTGCA-----TGGCACCACATCATCATGCTGCACCCTCACATGAGACTGGAGAAGGGCA-GCTCAGAG---------CATGCAACGTGCCCAGGCTGCCCGGGACAG----AGAGAGGAGCCGGGACGATCCAGCCCCTGGGTGTTGCTTTCA----TGCTGCCAACACCAAGCCCACG----GCCCTGTGAGGGTCAGGCACCTGGGGCAGCTCTGGACATGTTCAATGGCACGGGGCCACTTTCAGATGGAATCTGCTGCA------GGGAGAGGGGGCTCAACAC--C s mm5.chr5 136451269 295 + 149219885 GCATTCTCCCCACTGTGG--GGACAGAAGCTGTGTCCGCAAAGCCACTGCCACGAG-------TTATACCGTGTGGTCAATCTCCATCCCCACCCTGGGATTGAGGGG----------AAT---------CACACAGCGTGCCCAGGCT---TGGAGCTGGCCCAGAGCAGAGCTAAGGCGGTCCAGTCTGT-----TTGATGTCAGACGCGTTATCACCACC-CTCCCATGTTCCGTCCTGTGCAGGCCCAGTA-----GTCAGCAGCAGCCATGTTGAAACCTGCAGGA-AGCTCTCAGACAGGCTTCAGTGCA------GGGGGAGAAAGCTCAGTCCTGT s rn3.chr12 30523860 254 - 46649226 GCATCTTTGCTCCTGTGG--GGACAGAAGCTGTGCCCACAAAGCCATTGCCATGAG-------CTGTACCATGTAGTCCATCTCCATCCCCACCCTGGATTGGGGGA-----------AAT---------CACACAGCGTGCCCAGGCT---TGAAGCTGGCACAGAGCAGAGCCAAGGTGGTCCAGTCT---GATGTCATTGGCA----CGTTATCACCACC-CTCCCATG----------TGCAGGCCGAGGA------GCAGCAGCATCTGTGTTCAG----------------------------CCCTGCA------GGAGGAGAGGGCTCACTGCTGT s canFam1.chrUn 1806285 283 + 91062872 GTATCTTCCCTACATAGTGATGGGAAAAG----GCCCACCCAGCACCCACTGTGCACGCCCTTCGGCCACACATCACCATCTGTCACTTTCATTTCTGGTTACAGAAAGGGAGGCTGAAAGATCCCCCCCCCCCCACTATGCCTGGCCA---CCTGACTGGC--TGAGCAGAGCTAGGACTGCCTAGCCCTT---------------------------------------G----GCCTCCTGAGGGTCA---ACCCACAGCAGCTCTGAGAGCATTCAAGAGCACAGGGTTGTTTTCAGATAGGC----CTGCAGATTGGGAGAGGGGGAGCTCAACAC--C a score=44575.0 s hg17.chr7_random 741891 200 + 778964 ACGCAGAGAGAACCGGAAATGTCGGTGGCCTGGCT-CCCTGGGCCCTGCCTCCCCCGGTGCCTGGAGACCAGAAGACAGAGGGGGCTC-TGGCACTCTGCTGTGCAGCCCCACGCCCTTCAGGACACTCCAAGAGGAGTGTGGCTCCCACAGCCCTG---------------------AGCACCACCGGCCCAG-CAAAGGGTGTGAAACCATAAGGGGACTCT s panTro1.chr6_random 67012176 200 + 67355074 ACGCAGAGAGAACCGGAAATGTTGGTGGCCTGGCT-CCCTGGGCCCTGCCTCCCCCGGTGCCTGGAGACCAGAAGACAGAGGTGGCTC-TGGCACTCTGCTGTGCAGCCCCACGCCCTTCGGGACACTCCAAGAGGAGTGTGGCTCCCACAGCCCTG---------------------AGCACCACCGGCCCAG-CAAAGGGTGTGGAACCATAAGGGGACTCT s mm5.chr5 136451564 210 + 149219885 ATGGAGAGACATTTGCAGAAG-----GGCCTGGCTGTCGTACACATCTCCTCGCTGGGTGCCTGTCAGCT-GATGGCAGAGACAGTTCATTGTTCT---CTCTGCAGCCCAGTGCACTTTGGGACACTC-----GTAGTGTGATTTCCATGGCCAGGTACCTCTTGGAGACACAGGCAGGTGCCCACAGTCCAGTTAAAGCATGAGGAGCCAGAAGAGAAATCT s rn3.chr12 30524114 210 - 46649226 ATGGAGAGACATGCGCAGGAG-----GGCCTGGCTGCGCTGGATACTTCCTGTCTGGGTGCCTGTCAGCT-AATGTTGGAGTTGGCTCATTGTTCT---CTCTGTGACCCAGTGCACATTGGGACACTC-----ATAGTGTGATTTCCACAGCCAGGTACCTCTTGGAGACACAGGCAGGCACCCACAGTCCAGTTAAAGCATGAGGAGTCAGAAGAGAAATCT a score=8197.0 s hg17.chr7_random 742091 93 + 778964 GCTCCAAAGTATGTGCACATCAGCACAGCACGG------CAGGACTCTGTCGC---------CCAAGGCACGCACCGG---------------------TGAGGA----GAAGAGCTGCAGCTGAGAGCACAG s panTro1.chr6_random 67012376 93 + 67355074 GCTCCAAAATACGTGCACATCAGCACAGCACGG------CAGGACTCTGTCGC---------CCAAGGCACGCACCGG---------------------TGAGGA----GAAGAGCTGCAGCTGAGAGCACAG s rn3.chr12 30524324 133 - 46649226 ATTCCCAAACAATCATGTACCACAGTAGAAAGGGATGCTCATGACACAGTCATCGGCAGCCACCAGGGCTCTTACCAGCCAGACTTTGCCATTCTGACCTGAGGACCCTAGAAAGCTGGGATGAATAGCCCAG a score=17362.0 s hg17.chr7_random 742184 192 + 778964 AGCTGAACATGGCTGCAGGCCTGGTGGGCACAGCTGGGTGCAGCCACTGGAATCCTGGCCTGGCGGCACTGACCTTGCCACTCCAACGTGTGGCCCTCGCGTGCCCAGTCCAGGGGACCAAGAGACCAGCAGGGTGGGGGCGGGGCCCCGAGAGATGGGCACTTGGAGCCCAAGAGGCCAGCATCCGGGGAG s panTro1.chr6_random 67012469 191 + 67355074 AGCTGAACATGGCTGCAGGCCTGGTGGGCACAGCTGGGTGCAGCCACTGGAATCCTGGCCTGACGGCACTGACCTCGCCACTCCAACGTGTGGCCCTCACGTGCCCAGTCCAGGGGACCAAGAGACCAGCAGGGTGGAGGCGGGGCCCCGAGAGACGGGCACTTG-AGCCCAAGAGGCCGGCATCCGGGGAG a score=21827.0 s hg17.chr7_random 742376 163 + 778964 AAAACAGCCCCAGGCCTTGCAAGTCACAGCAGACGCAGACGCAGGAGATGCAGGTGGGAACCCAG----CCCTCCCCGATACCCAGGTCTCAGTTTCTCCATCAGCTCTGGGTCAGAGCAGCACTAAAATGGCTGT-AAGCCCCAATTTTAGAGTCCAGGGGGTGTCC s panTro1.chr6_random 67012660 163 + 67355074 AAAACAGCCCCAGGCCTTGCAAGTCACAGCAGACGCAGACGCAGGAGATGCAGGTGGGAACCCAG----CCCTCCCCGATACCCAGGTCTCAGTTTCTCCATCAGCTCTGGGTCAGAGCAGCACTAAAATGGCTGC-GAGCCCCGATTTTAGAGTCCAGGGGGTGTCC s rn3.chr12 30524861 162 - 46649226 AAACCTGCCCCAAA------GGGTCTCCATGAAGACTGGCACAGGATACAGTGATAGGACCCCAAATCCCCCTCTCCTAACCTTGGATCTCAACTTTCCCAACAGATATAGCTCAGAGAAGCACTAATGTGCCTGCAAAAATCCAGTCCCAGAAACCCAGAGTTACTC a score=5273.0 s hg17.chr7_random 742539 38 + 778964 TATCTTCTGCCAAAGCCCTCCCCAAGGTCCCCTCTTTC s panTro1.chr6_random 67012823 38 + 67355074 TATCTTCTGCCAAAGCCCTCCCCAAGGTCCCCTCTTTC s rn3.chr12 30525328 34 - 46649226 TCTCTTCTCCCTTCTCTCTCCTC----TTCTCTTTTTC a score=1727.0 s hg17.chr7_random 742577 9 + 778964 TGGCAAAAG s panTro1.chr6_random 67012861 9 + 67355074 TGGCAAAAG s rn3.chr12 30525569 9 - 46649226 TTGCAACAG a score=26170.0 s hg17.chr7_random 742586 138 + 778964 -----CCCACAGCCCAGCAGGTCCAGAAAAACCTCAGGAA------CTTGGCCCAAGACCAAGACGGTGCAGACGGCACTTCTCCACCCGCTGCGGGTGCCTGAACGAACCGGGCTTCCTCAGTGACAAC-----GATCTTTTCAGAAACGCCG s panTro1.chr6_random 67012870 138 + 67355074 -----CCCACAGCCCAGCAGGTCCAGAAAAACCTCAGGAA------CTTGGCCCAAGACCAAGACGGTGCAGACAGCACTTCTCCACCCGCTGCGGGTGCCTGAACGAACCGGGCTTCCTCAGTGACAAC-----GGTCTTTTCAGAAACGCCG s mm5.chr5 136453105 140 + 149219885 -----CTCAATGTCCAGCAGTGCCAGGAGAACATCATTAAGTTGTCCTCGGCTATGGACCTTGATGGTG-AGATGG-ATAGGTCTGCCAGTGGAGGCTG-------GAACAAGTCTGTTTCCATGACAACAAGATGGCACACTTGGGAAGCCAG s rn3.chr12 30525578 145 - 46649226 AGCTGGGGAGTGCCCAGTAGTGCCAGGAGAACTTCATTAAGTTGCCCTCAGCTACAGACCTTGGTGGTG-AGACGG-ATGGTTCTGCCAGCGGAAGCTG-------GAACAAGTCTGTTTCCATGACAACAAGTCAGCACATTTGGAAAGCCAG a score=76708.0 s hg17.chr7_random 742724 238 + 778964 AGCCCAGGCCCGTCGGCAGCAGAA-------------AGTGCCGCGTGTCTGCCCCCGAGAGCGGAGAGCGGG-CCGGATGCCCGGGGCAGTGGCAG---GCGCAATGACCCAGCCCAGGCCATTTTAGATTTCTGCCAGCCATAAAAAAA-GCACTTCTTTTGAAAAATAATTTATAATTCACACTGACTGCCCAGCAATTACGCCCAGCCGGAGGAATGCAAGCGTGTTTTGCCCGGGGAACCTCAGACATTAA s panTro1.chr6_random 67013008 238 + 67355074 AGCCCAGGCCCGTCGGCAGCAGAA-------------AGTGCCGCGTGTCTGCCCCCGAGAGCGGAGAGCGGG-CCGGATGCCCGGGGCAGCGGCAG---GCGCAATGACCCAGCCCAGGCCATTTTAGATTTCCGCCAGCCATAAAAAAA-GCACTTCTTTTGAAAAATAATTTATAATTCACACTGACTGCCCAGCAATTACGCCCAGCCGGAGGAATGCAAGCGTGTTTTGCCCGGGGAGCCTCAGACATTAA s mm5.chr5 136453245 227 + 149219885 CGTCCAGGCTCTGGTGATGCAGAA------------CAGTTGTGTTTGCCTATC-----------AGTGCAAG-TTAGGTGGCTGTGGTAGCAGCAGCCTGCTTGGTGACCTGGCCCAAGTCATTTTA-ATCCCATCCAGCCCTAAAAAAAGGCACCTCTTTTGAA----AATGTGCAGTTCCCATTGACCACCTAGCAATTAAGCCATGCCAGAGGAATGCAGGCAGGTTGTGACCCAGGAACCTCAGAAACTAA s rn3.chr12 30525723 230 - 46649226 TGTCCAGACTCTGGTGATGCAGAA------------CTGTTGTGTCTGCCTATCTATC-------GGTGCAAGACAGGGTGGCTGTGGTAGCAGCAGCCTGCTCGGTGACCTGGTCCAAGCCATTTTA-ATCCCATCCAGCCCTAAAAAGG-GCATCTCTTTTGAA----AATGTGCAGTTCCCATTGGCCACCTAGCAATTAAG-CATGCCAGAGGAATGCAGGCAGGCTGTGACCCAGGAACCTCAGAAGCTAA s canFam1.chrUn 1807604 204 + 91062872 AGCCCCAGACCACCTGCAGTAGAAAGAGGGTATTTCCAACGCTG--TGGCTGCCATC--------AGGGCAGGTGTGGATGCCCACAGCGGCAGTAG-----------GCTCAGCCCAGGCCACCTGAGGTCTCTGCCAGCCATGGAAAAA-GCATTTCTTCCAAA----A-----------------------CAGCAGGGACA-CCCCCCAGTGGAACACAGACACGT--TGGCTCAGGGACCTCAGACATCAA a score=20198.0 s hg17.chr7_random 742962 148 + 778964 -----AGCCTCGTGCACCCGTCCATCTCTCGCGGCGGGGTGACAGCTGAAGGCTGCCAGGGGCCCCCGGGGGAG-GGCCCGGCCCCAAAGACTG----------CCCCTTTTGGGATCATGTTCCTTCTGTGGCTGAGACGGTCGGTGAGGCAGGGCTGGGAGC s panTro1.chr6_random 67013246 148 + 67355074 -----AGCCTCGTGCGCCCATCCATCTCTCGCGGCGGGGTGACAGCTGAAGGCTGCCAGGGGCCCCCGGGGGAG-GGCCCGGCCCCAAAGGCTG----------CCCCTTTTGGGATCATGTTCCTTCTGCGGCTGAGACGGTCGGTGAGGCAGGGCTGGGAGC s canFam1.chrUn 1807808 161 + 91062872 AGGGCAGCACAGCTGGCCTGTCTGTCTCCTGCTGCAGAATGACAGTGGCAGGC--ACTGCAACCCTCAAGTGAGAAGACTGGCTGCAGAGGCTGGCTGAGGTGCCTTCCCCTGGGGTTGGTGTCCCTCTGTGACAAAGACTACAGGTGAGGCGAGG-TGGGAGC a score=39184.0 s hg17.chr7_random 743110 452 + 778964 TGGCCTCCGAGCTGGCCGGTGGGCACTGGGACCCCCACGTGGGGGCTCTGCAGTGTGTCTGCCGGCATCCCCAAGGGGGGCTTTGTGTGGGAAAAGGCAGGTGACCCCCATTTCCAGGTACAGGGCTTCCTCAAGCCCACGGCACGGGGAGGGCGGGGGCGCTAGAAGTGGCTTCTTAACACCGGTCCCACCCACTTCCCATGAGTCGGCTCGGGGGGCACGGGGCCTGGGTCCCGGCCTCAGCTCTGCCCCATCTTGCCAGCACCTACACACAGAAAGCCTGGAAAACTGGAGCGTTGATAACGGCTgccaggtgcagcagctcacgcctataattccagcactctgggaggccaaggcgggagggtcgcttgagctcatgagtttgagaccagcttgggcaacatatcaagacttcacctctattaacagaaaaaaaaAGGAAAAGAAAA s panTro1.chr6_random 67013394 447 + 67355074 TGGCCTCCGAGCAGGCCGGTGGGCACTGGGACCCCCATGTGGGGGCTCTGCAGTGTGTCTGCCGGCATCCCCAAGGGGGGCTTTGTGTGGGAGAAGGCAGGTGACCCCCATTTCCAGGTGCAGGGCTTCCTCAGGCCCACGACACGGGGAGGGC--GGGCGCTAGAAGTGGCTTCTTAACACCAGTGCCACCCACTTCCCATGAGTCGGCCCGGGGGGCATGGGGCCTGGGTCCCGGCCTCAACTCTGCCCCGTCTTGCCAGCACCTACACACAGAAAGCCTGGAAAACTGGAGCGTTGATAACGGCTgccaggtgcagcagctcacgcctgtaattccagcactctgggaggccaaggcgggagggtcgcttgagctcatgagtttgagaccagc-tgggcaacatatcaagac-tcacgtctattaacag-aaaaaaaaGGGAAAGAAAA a score=1136.0 s hg17.chr7_random 743812 265 + 778964 ACCGCTG--TGGAACCCAGCGTGACAGACCCCAGGGCCAATGAGAAGAGAAAGAGGCCCAGGCAGGCGGAGCAGGGGTCGCCAGCTGT--GAACGGTGCCCA---CTTTTCCTCCCA---CCAGGGC-------------CTCCGTGAGGTGGACTTGCCAGGCAGGTCCCGGC-TCTGATCCC----CCCATGGATCAGGGTCCCCACGTGCACACTGTGTGACCCT-CAGCACATCACGGCTGCCTCAGAGCTCCTGAGCCCACCGT-------CCCGCCCGAGTGAGGGTGCACACGG s fr1.chrUn 165790623 291 + 349519338 AACGCTGACTGGGAGCCAGGGCTGTGGGAGCCAGGCCCAGGGCTGTGGGAGCCAGGCCCAGGCGTGTGGGACCCAGGCCCAGGGCTGTGGGACCCAGGCCCAGGGCTGTGGGACCCAGGCCCAGGGCTGTGGGACCCAGGCCCAGGGGTGTGGGATT------CAGGCCCAGGTGTGTGGGACCCAGGCCCAGGGGTGTGGGACCCCA---GTCAGCTGCCTGGTCGGACAGAAGATCCCTGCTG-ATCACAGCCCTCGAGCACCGGGTCGGATCCCCCCCCCGGGGGACGGTCATCAGGG a score=91.0 s hg17.chr7_random 744501 1 + 778964 A s rn3.chr12 30527429 1 - 46649226 A a score=8569.0 s hg17.chr7_random 744502 92 + 778964 GAATTCTACATCCATTGCTTCCAAACGCTGAGGTCCTGGGTAAGGATCAGGG---TGAACAGAGGACTCCAAAGCTTACAAGAAAGAAAAATCAg s mm5.chr5 136454920 91 + 149219885 GAATTCCAAACTCACTAGTTGCAAATGCAG-GGTCCCCAGTGAGAGACAGGAGAACGAACAGAGGGCTCAAATG---AAAGGAAAGAAACCTCAG s rn3.chr12 30527430 80 - 46649226 GAATCCCAAGCTCACTAGTTGCAAATGCAG-GGACCCCGGTGAGA----------GAAACAGAGAACCCAAATA---AAAGGAAAGAAA-CTCAT a score=7306.0 s hg17.chr7_random 744932 104 + 778964 GAGTGCTGGCCCCGGGCTGGGCCCCTGCCTGGGAGCCTAGAGGTGG-GGT-CACC--CCATCCTTCCT-----CGGATAAAACGTG----------AAGCGGTGGAGGAAAGAGACGGGCATC s mm5.chr5 136455012 118 + 149219885 GGCTGCTG-CCATGTGTCGAGCCTC-ACCTGAGTGCCTACAGATAG-GGTACACCTACAACTCTGCCTGGCACTGGACAGCGTGTGTCCCTTAGAGAAACAGAGGAGCTGGGAGA--GACACT s rn3.chr12 30527511 120 - 46649226 GACTGCTG-GCCTCTGTTGAACCCTCACCCAAGTGCCTATAGATGATGGTACACCCATGGCTCTGCCCAGCACTGGACACTGTATGTCCCTTAGAAAAACAGAGCAGCAGGGAGA--GACACT a score=3485.0 s hg17.chr7_random 745036 117 + 778964 AGGGAGTCTCCCAGATCAGACACTCTGGGATCCTAAAC------TGGAGTCAGCGTTCACATTTTGGGCGGTGGTCTACTTCCTGGAGACAC------------------CAGACCG--------GGTCTCCCGCGTCCCCCAGG---TCCC-- s mm5.chr5 136455130 121 + 149219885 TAGGAAACTTCCAAAGGACAAGTCACAGGGTTTCAACTCCAGTGTGAAGTCTCCGCTGACCTTGTGGGATGTAGCCAGCTCCCGGGAGGGAC-------------------AGCCTG--------GTGACTTCTCATCTTCTCA----TCCC-- s rn3.chr12 30527631 152 - 46649226 TAGGAAACTTCCAAAGGACAAGTCACAGCGTTCCAACTCCAGTGCGGAGTCTGAGCTGACCTTGTGGGATGTAGTCAGCTCCCGGGGGACACTGGTGACATCTCGCCTTCTAGTCAGCTCCCACTGTGAGCCCAAGTCAGGTAGGAGCCCTC-- s canFam1.chrUn 1808268 109 + 91062872 AGGGAGGCTTCTGGATCAGATGTCCTGGGATCCC----------TGTCGCCTGAATGCAC-----AGGGAGGGGCCGTCTCTCTGGAGAGAC------------------ACCCCTG--------GTGGTACCCCCGCTCCCTG----TCTCCC a score=-2656.0 s hg17.chr7_random 745153 49 + 778964 AGCACGTCCCAGCTCGGGACTAAGGCAGAAAC----------AGGAGCTG------TGTGAGGAG s mm5.chr5 136455251 46 + 149219885 ACCGTG----AGCCCGAG--TAAGGCAAGGGCC------CTCAGTAG-TG------TGTGAGTTG s rn3.chr12 30527783 57 - 46649226 AGC-------AGTGTGTGATTTGGACAGATCCAACTCTGCTCAGATG-TGGGGGGATGGGTGGGG a score=42407.0 s hg17.chr7_random 745202 271 + 778964 CTCGGGGCCAAT----------------ACAGAAACAGACACCATCC-TGC-AAATGCTCCCGTCC-----------------------------------AAACCAGCCCGGCGCG-GCCAG--------------CTATTCTTAGCGCACAGGGACCCAAAATTAAA-ACAGAGGAAGCGCCAGCTCCCTCAGTGGTTTGG-GAACTTCCCTGAATATAAGGTTCCAGCCACAAAAATCCCCCAGCCGGGAGCGACAGGGCGTCAA--GGATGGTGGGGAAACG---GCTTATGCAACGCCGGGCCAGGTGCGCCCAG--------AGGAGATGGGAACCGCTGTGCCCTCT s mm5.chr5 136455297 297 + 149219885 GCCAGATCCAACTCTGCCCAGGTGGGGGATGGGTGCGGACAGGATCC-----AAATTCCCC----------------------------------------ACAAGAGCTCTGCGGA-TTCTGGAGCCCAAATGGCTCTATTCTTAGTGTCTGGGGATCCGAAATTAACTAAAAAGAAAGTGCCAGCTCCCTCTGCGATTTGGAGAGCATTCCTGAATATAAAGTCCTAACCACAGAAGTCCCACAGCCAGCAATGACACAGCATAGACTAGACAGCGGAGAAACAGCTGCTTATGCAACTTCAGGCCAGGTGTGCTCAG--------AAGGTACTGGGA---CTGTGTCCTCT s rn3.chr12 30527840 256 - 46649226 ACAGGATCCAAA--------------------TTCCCCACAAGAGCTCTGC-GGATTCTGG---------------------------------------------AGCCC------------------AAATGGCTCTATTCTTAGTGTCTGGGGATCCGAAATTAAACCGAAGAAAAGTGCCAGGTCCCTCTGCGCTTTTGAGAGCATTCCTGAATATAAAGTCCTAACCAC---AGTCCCACAGCCAGCAATGACACAGCACAGACGAGACAGTCGAGAAACAGCTGCTTATGCAACCTCAGGCCAGGTGTACTTAG--------GGGGTACTGGGA---CTGTATCCTCT s canFam1.chrUn 1808439 330 + 91062872 CCCAGGACTGAT----------------GCAAACACAGGCACCCTCC-TGCAGGACACTCCCTTCCGGGTCAGCCAGCACTGTCATTTTCTTTCCCAAGATGCAGAAGCGCTGCAGACTCCCAGCACAGCCACGA--CTATTCTTAGTGCACAGGGATCCAGAATTAAG-ACAGAGGAAGTGCCAGCTGCCTCAGTGGTTTGG-GAACTTCCCTGAATACAAGGTTCCAGCCACAAAAATCCCACAGCCAAGAAGGGCTCAGCACTGG--GGATGGT-GAGGAACAATGGCTTATGCAATAGGGGGCCAGGTGTGTGAAGGGGACTGCGGGGGACAGAGGGTGCTGGGCCCTCT a score=2747.0 s hg17.chr7_random 745473 649 + 778964 TCCTGCCCCAAAACCGCTCCAGCCCCTCTC-------AGGGGGAGGGTGTCTCAGGGGACCCCTCCCACGCGGCGACAGAGGCCTCCCAGTGAAGGCAGGAGTGAGCGGGTTCAGACAGAAGAGAGGGAGCGTGCAACTCCTCCCAGGAGGCTGCacatcatctgttctgtgtactggagtatccccagcagcacaggagccccagacccagggtgggcaccccagcaatgccccacaggtgcataaatgaGAAGCTCATGGGGTGCAGAATCTGATGAAACAGCCGCCCCAAAGACTGTGCGAACGCGCCATCC------ACAAAACACAAGAGCCGGCATCGCCGTGGGGCCGGGACAGGCCAGCGCCAGCAGGACACCGTCTCTCAGCTGGCCCATGGCCATCAAATCCTTGTTCCCCAATCAGACGACGCACTTCCAAGAGGGAAACCCA---GGGTTGAACTTGCTCTCCCAGCTCACGGGGCTCCATCCTAAACCATCCCCCAGGACTCTCC---CCAGTCCTGCCCTTGGGCGTCCTGGAACTGTGGCTCCCTCCTTAGGAATCACACCCACCCAGGCTGGCCTTCCAGGAGTCAGCCAAGCCCCCTAGAAGACACCAGGCCATTCA----CCTCCTGCCATAGCAACCAGGCTGGCCTCGGGCA s canFam1.chrUn 1808769 500 + 91062872 ------CCCAAA------CCTGCCCCTTCCTGGGAGGGGGGGGATGGTGCCTCAGGGTGCCTCACCTACACCAGCACA----------------------------------------------------CATCCAGCTGCTCTC---------------------------TCctgatgtatccacagctctacaagagcccctgacacacagtgggtgcccaatcaacgcttactgagtacacagatGA-CGGTTCCTCACACACAGAGCCTGATCAAACAGTTGCCC-AAAGACTGCACTGAAAC--CTTCCTGTGTTGTGAAACCCTGGGTGTTGCATTGGGATGAGGATGGG-CAGGGTGG--------------------------GGGTGTTGGTGATC--------------------------------CCGAGAGGGGAGGCAGTAGGAGCAGGACCCCATCTTC---------AGGCTCCCACCTGACTAAGCCATGAGGATGTTTCAAACAAGTGTTCCCCCAGAGCATCCCCACATCACAG-TCCCTCCCTGGAAGCTGCAGC-GTCCAGGCCGGCCTTG-GGGAGACAGCCCAGTCCCAGAGAGCATGTGGGGGAAGCCAAGGGTCTCCC-----AGTAAGCAG-CTGGCCTTAGTCA a score=91.0 s hg17.chr7_random 745473 1 + 778964 T s rn3.chr12 30528096 1 - 46649226 T a score=430.0 s hg17.chr7_random 746130 57 + 778964 AGGGAACCATC--CCAAGCAGGGGATGGAGGAGAGGCCGAGGACCCCGGCAACACCCAC s galGal2.chrUn 141970481 55 - 165033910 AGAGGGCCTTCAGCCCAGTGGGGGACCCCAGACTCAAAGGGGACCCC----AAACCCAA a score=-1175.0 s hg17.chr7_random 746187 71 + 778964 CTGGCTCAACCCCTCCTCGGCCGGGCTGGACCCC----GGGACCCCAGGCCCCGAAGGAGAGGGCTCGGAGCAGA s canFam1.chrUn 1809281 45 + 91062872 CTGTTAGAACCCCTCCTGGG---GTCTAGGCCCT----GGGATCTCAG-----------------------CAGA s galGal2.chrUn 141970536 55 - 165033910 ---------------ATGGG--GCCTTCAGCCCAATGGGGGACCCCAGACCCAAATGG---GACCCCAAAGCCAA a score=-381.0 s hg17.chr7_random 746258 8 + 778964 CGCTGTCC s canFam1.chrUn 1809326 3 + 91062872 CAC----- a score=-4501.0 s hg17.chr7_random 746266 178 + 778964 GGGGCTGCATTGGCAACAAGCCCACCGCCACCAGGTTCTGCTGTGTCACCCCCAACCAGCTCAGAGGAGCCCCTGGCCCAGCGGTCATGGCTAGGTAAGGA--CAGAGTG---GAGG--------GGTGCGGCCACCCAAACCACA----GGCGCTGGCTCC---TGGAGGCCTCTGCCCAGCGATGG--------------------------GACAGAAGGA--------- s canFam1.chrUn 1809329 131 + 91062872 ----------------------------------------------CATCCCCGACCCACAAAGTAAAGCACCTGGTGCAGC---CATGACCACCTAGAGAGCCTAAGTGACTGAGA--------AGTGAAGTTTCCCAAAGGCCA----GGTGCTCAGCTC---TGGTGGCCTCTTCCCAGTGATGG-----------------------------AGAGGGA--------- s galGal2.chrUn 141970593 213 - 165033910 GGGACCACAGGGCCAAAGGGGACCCCAGACCCAAATGG--------GGCCTTCAGCC--CAGTGGGGGACTCCAGACCCA-----AATGGGACCCCAAAGC--CAAAGGG---GACATTCAGCCCAGTGGGGGACCCCAGACCCAAATGGGACCCCAGGGCCAAAGGGGGCCTTCAGCCCAGTGGGGGACCCCAGAGCCAAAGGGGACCCCAAAGCCAAAGGGGACCGCAGGG a score=121.0 s hg17.chr7_random 746444 7 + 778964 GCTGAGG s canFam1.chr24 46682483 7 + 50732077 GCGGGTG s galGal2.chrUn 141970806 7 - 165033910 CCAAAGG a score=725.0 s hg17.chr7_random 746451 9 + 778964 AGGAGACCT s canFam1.chr24 46682490 9 + 50732077 GTGAGCCCC s galGal2.chrUn 141970591 9 - 165033910 AGGGGACCA a score=4263.0 s hg17.chr7_random 746460 193 + 778964 GAGGCCATAAGGGGACACC---TCCAAACTATGAAGGAACCCCAA---GACCATGAGGGGACCCCCTAGACCACAAGGGGACCCCAAGACCATGAGGGGACTCCCC--AGACCACAAGGGAAATCCCAAACCATAAGGGGACCCCTAGACCATGAGGGGACT---------------CCCCCAGACCATGAGAGGACCCCAAATTATGAGGGGACC s canFam1.chr24 46682499 171 + 50732077 TCGGTCACCAGGGGACCCC---TCCA------------------------TCACCAGGGGAGCCCCTCCATCACCAGGGGACCCCTCCATCACCAGGGGACCCCTC--TGTCATCAGGGGAGCCCCTCCATCACCAGGGGACCCCTCCATCACCAGGGGAC----------------CCCTCTGTCATCGGGGAGCCCCTCCATCACCAGGGGACC s galGal2.chrUn 141970600 200 - 165033910 CAGGGCCAAAGGGGACCCCAGACCCA------AATGGGGCCTTCA---GCCCAGTGGGGGACTCC--AGACCCAAATGGGACCCCAAAGCCA--AAGGGGACATTC--AGCCCA-GTGGGGGACCCCAGACCCAAATGGGACCCCAGGGCCAAAGGGGGCCTTCAGCCCAGTGGGGGACCCCAGAGCCAAAGGGGACCCCAAAGCCAAAGGGGACC s fr1.chrUn 165794734 197 + 349519338 GAGACTCCACAGAGACACCAGGACAA------CATGGAGACTCCACAGAGACACCAGGAGAACATGAAGACTCCACAGAGACACCAGGACAACATGGAGACTCCACAGAGACACCAGGACAACATGGAGACTCCACAGAGACACCAGGAGAACATGGAGACT------CCACAGAGACACCAGGACAACGTGGAGACTCCAAA-------GAGACA a score=-9969.0 s hg17.chr7_random 746653 124 + 778964 CCAAGACCATGAGGGGATCCCCTAGACCATGAGGAGTCCC---------------CCCCAGATCATGACGAGACCACCCAAACCAC--AAGGGGACTCCAAA----CTATGAGGGTCCCCAGA-CCACCAAGGGACCCCAGACACT s canFam1.chrUn 1809460 32 + 91062872 CCAAGATGGTGCTGGGA------------------------------------------------------------------------------------------------GGTCCTTGGA-CCAG-----------------T s galGal2.chrUn 141970800 141 - 165033910 GCAGGGCCA-AAGGGGA-CCCCAAAGCCAAAGGGGGCCTTCAGCCCAGTGGGGGACCCCGGAGCCAAAGGGGACCCCAAAGCCAAAGGAAGGGGACCCCAAA--GCCAAAGGGGGCCTTCAGC-CCAGTGGGGGACCCCAGACTCA s fr1.chrUn 165794931 128 + 349519338 CCAGGAGAACATGGAGA-CACCAGGAGAACATTGAGACTC---------------CACAGAGACACCAGGAGAACATGGAGACTCC--ACAGAGACACCAGGAGAACATTGAGACTCCACAGAGACACCGGGAGAACCTAGAAACT a score=-14282.0 s hg17.chr7_random 746777 403 + 778964 GTGGCAGACCCAGAGCTTCCCAGG--ATGAATGGCCGCA-----CGGGGTGCTGTCTACGCTC-ACTGGA---TGGCCCCAAACCGGCCCAGGGAACT----GGGTCCACATCTGGTCACAGCTGCCCTCAAGCTCCCACCGTGGCTCCTGAGCACTCTGACAGGGTGCTTCCTGCAGAAGCTGCGGGTCCTCGGCCTGGAGCCCTCCCCGCCCTCTCTGGACAGCGCCTCACTGCCCCACGCGGGAAGGCCTCCTCATCCACAC-AGGCCCCTCAGCCCTGG------CCCAGCCCTGTGCTGCTGTTCCTCGGCCCTCACGCTCCTGGGCTGCTTCCGG-CACCCGGGCGTCCTGCCCT----GAGGCTCTGCT-CAATGCCACCTTATC----AGGGGGGTCTCTGAGGCCCCTCCACGGAACAGCAGTCCC s canFam1.chrUn 1809492 350 + 91062872 GTGGCTGGCCCAGAGCCTTCTGGCTCCTTCACTGCTGCCGGGGTCAGGATGCTTTCCACCATCTGCAGGA---CAGCCTCCAGTTGGCTGCAGAAGCT-----------CCTCTGTTGA-AACTACTGCAGGGCTCCCCACACACCCCCAG-----------------------GTAGGAGCTGAGGG--CTCTGTGTGAACCGTACCCCACAT------GAC----CTTTACATTCccatccatggtggtctccctact--------gctccacatgcat---------ccaaacttgtgccatagggcctttgcctggacactctt------ctccaggacatgctggttccttgcc-----------tctgctgtgatgacaccttatcccaggagggggtcttcagggcctttctataaaacagtgg-ccc s galGal2.chrUn 141970941 274 - 165033910 AAGGGGACCCCAGGGCCA--------------------------AAGGGGGCCTTCAGCCCAGTGGGGGACCCCAGACCCAAATGGGACCCCAAAGCCAAAGGGGAC--CGCAGGGCCAAAGGGGACCCCAGACCCAAATGGGGCCTTCAG---------------------------------------CCCAGT-------------------------------------------------GGGGGACTCCAGACCCAAATGGGACCCCAAAGCCAAAGGGGACATTCAGCCCAGTG-----------------GGGGACCCCAGGG---CCAAAGG------GGGCCTTCAGCCCTATGGGGGACCC-----CAGAGCCA-----------AAGGGGACCCC---GACCCCTAAGTGGGACCGCAGGGCC a score=3281.0 s hg17.chr7_random 747180 431 + 778964 CCCCGCCCCAC--TCCGTCTGCCTCCACCTGCTTCTCGGCTTGGTCCTTCTCCACAGGAAT---CACCCTCTGGGGCCGGGTGTT---------CACGGCCGCCTCCACCAGGACAAGACTCCAGCTGCCCTGCCTGTGTTCCCCACAGAC------CTGCACCCAGAACAGGGCCTGGCAGGTGGGGTGTGTG---------CGGGGAGGGCG-TGGAGG-----GTCTCCTCTCCCTGGAAAGGGTCCTCCCCGGGCTCCCCACGAGCTCACCTCCAGGAGCCCCTACAAACACCAGCCGTGGCAGCTGAATCGGCCCATAGCACCCCCGCCGCCCACAGCAAGCACAGGCATACACCCACGTGTGCAC-ACAACACACACAGTACAGGGTACGTGGCTCAGAGTAGATCTGGCCACATATAAGAAAAAA--------------AGCTAAAAGCCCAAGAGTCAGTCCCCACACACAGG s canFam1.chrUn 1809842 404 + 91062872 tcccacctcacagtcc-----cctccaccctcttctctgttgtaattatctcta-aggaattgtcgccacctgagatactgctctactaactaacacg-ctggcttcccgagggca--------gatgctgcgtctgtggtgccccctgatgcatctcagccctgagaacagtgcctggTGGGTGGTGTGTGTAGGATGAGCACTGAGTGGGCACTGGAAGAGCCTGCCTTCTCTCCCCAGGAAGAGCCTCTC---GGTTCAC----AGCTCACCTCTAGGAGCCTT------------CTGTG-CACCTG-------CCACAGT--CCCAACCATC--------GCACAGGGA----CCCACACCTGCCCtgcacca--------------------gctaagagtgcatgtggtcgcatggaagagaaaacctaaaatgacagaggcaaaaacacctggggttgacccctgtatg-agg a score=4745.0 s hg17.chr7_random 747611 54 + 778964 AAGCCCGTGGGTGAGCAG-------ccaccgtgtcg-g------cagggaaccacgctcctcacacct s panTro1.chr6_random 67018418 55 + 67355074 AAGCCCGTGGGTGAGCAG-------CCACCGTGCCATG------Aagggcaccacgctcctcacacct s canFam1.chrUn 1810246 66 + 91062872 atgtctg-ggacaagcagtccagtccctctatgctg-gggccaccggagagccaggcttctggcatct a score=8175.0 s hg17.chr7_random 747665 23 + 778964 ctttgctc---catcaccatggtgag s panTro1.chr6_random 67018473 23 + 67355074 ctttgctc---catcaccttggtgag s mm5.chr5 136456182 26 + 149219885 CTTTGCTCTGATGTCACCTTGGAGGG s canFam1.chrUn 1810312 23 + 91062872 ctttgttc---caccaccttggtgaa a score=88723.0 s hg17.chr7_random 747688 249 + 778964 tgggtttcacgctcatagtcacctcctggcccaacatggcag--ctggagcaccagccatcacaaccacagtccagacagtg---ggaaggagaaaa--gg-AGGACGGTGA-AGGGGCCTCCCCAGCCACCTG----TCTTCTAAGAAGCTTCCAGAATCCCTCC--ACCCCTTTCCACTCCTCTCACAGGCCAGAT--CTGTCAGGGAGGTTGGAAGTGTCTTTTCTCCAGGTGCATCCCCACCTTGAATAGAGCTAGGGTTCC s panTro1.chr6_random 67018496 254 + 67355074 tgggtttcacgctcatagtcacctcctggcccaatatggcag--ctggagcaccagccatcacaaccacagtccagacagtg---ggaaggagaaaa--gggaggacggtga-aggggcctccccAGCCACCTGCTTGTCTTCTAAGAAGCTTCCAGAATCCCTCC--ACCCCTTTCCACTCCTCTCACAGGCCAGAT--CTGTCAGGGAGGTTGGAAGTGTCTTTTCTCCAGGTGCGTCCCCACCTTGAATACAGCTAGGGTTCC s mm5.chr5 136456212 231 + 149219885 TGGGTTTTATTCTCCAAGTGGCCTTCTGATCCAAGATGGCAGCACTAGAGATCCAGCTATCACAACCACAGTCT--ACAGTATCTTGAAGGAGAGAA--GGGAGGAACGCAATAGAGACGTTCCCAGTCATCTTCC--TGTTTTGAGAAGCTTCCAAAACCCTTTCTGATATTTTTCCACTCAGGTCACAGGCTGCGT--CTACTAGGGAAACC----------------------CATCTTCACCTTAGA-----CCTGGGATTC s rn3.chr12 30528727 232 - 46649226 TGGGTTTTATTCTCCAAGTAACCTTCTGATCCAAGATGGCGGCACTGGAGATCCAGCTATTACAACCACATTAT--ACAGTATCTGGAAGGAGAGAAATGGGGGGAAAGCAATGGAGACAGTCCCAGTCATCTTCC--TGTTTTAAGGAGCTTCCAAAACCCTTTTTGATA-CTTTCCACTAAGGTCACAGGCTATGT--CTACTGAGGAAACC----------------------CATCTTCACCTTAGA-----CCTGGGATTC s canFam1.chrUn 1810335 223 + 91062872 tgagttccatcctcagagtcacctcatggtccagaatggcag--ctggagctccagccatcacaaccccattccagacagct---gaaaggaaatag--ggaaggaaggcaA-AGAGGCCTCCCCAACTGTCTGCTTACCTTCTAAGAAGTTTTCAGAATCCCTCCC-ATA-CTTTTCACCCACCCCATCAGCCCTTTAACTGT--------------------------------CACCCTTG-CTTGGACGAAGCTGAAGCTCC a score=0.0 s hg17.chr7_random 747937 18 + 778964 CAGGGACGCCTGGCCAAG a score=-614.0 s hg17.chr7_random 747937 5 + 778964 CAGGG- s panTro1.chr6_random 67018750 5 + 67355074 CAGGG- s mm5.chr5 136456443 5 + 149219885 TGGTG- s rn3.chr12 30528959 6 - 46649226 TGATGG a score=528.0 s hg17.chr7_random 747942 13 + 778964 ACGCCTGGCCAAG s panTro1.chr6_random 67018755 13 + 67355074 ACGCCTGGCCAAG s mm5.chr5 136456448 10 + 149219885 GTGTCAGATC--- a score=949.0 s hg17.chr7_random 747955 10 + 778964 GGTGGGTGTT s panTro1.chr6_random 67018768 10 + 67355074 GGTGGGTGTT s mm5.chr5 136456458 8 + 149219885 --CTACTACT s fr1.chrUn 56278051 10 + 349519338 GGTGTTTGTC a score=61.0 s hg17.chr7_random 747955 19 + 778964 GGTGGGTGTTGGCCT-TCTC--- s fr1.chrUn 56278051 19 + 349519338 ----GGTGTTTGTCTGTCTCATG a score=1463.0 s hg17.chr7_random 747965 9 + 778964 G-GCCTTCTC s panTro1.chr6_random 67018778 9 + 67355074 G-GCCCCCTC s mm5.chr5 136456466 10 + 149219885 GTGCCTCCTC s rn3.chr12 30528999 9 - 46649226 -AGCCTCCTG s fr1.chrUn 56278061 9 + 349519338 -TGTCTCATG a score=-2466.0 s hg17.chr7_random 747974 10 + 778964 TGT---------------GCTTGGG s panTro1.chr6_random 67018787 10 + 67355074 TGT---------------GCTTGGG s mm5.chr5 136456476 25 + 149219885 CGCTGACAGAACGTCCTGGCCAGGG s rn3.chr12 30529008 7 - 46649226 ------------------GCTAGGG s canFam1.chrUn 1810558 10 + 91062872 TGT---------------GCCAGGG s fr1.chrUn 56278070 10 + 349519338 ---TGAA-----------GTTAAA- a score=-2773.0 s hg17.chr7_random 747984 5 + 778964 CACCA s panTro1.chr6_random 67018797 5 + 67355074 CACCA s mm5.chr5 136456501 4 + 149219885 TTCC- s rn3.chr12 30529015 4 - 46649226 TTCC- s canFam1.chrUn 1810568 4 + 91062872 TGCC- s galGal2.chr14 4266134 5 + 20603938 CACAA s fr1.chrUn 56278080 3 + 349519338 -GCC- a score=325354.0 s hg17.chr7_random 747989 167 + 778964 ACTCACCATAAGGATGCGCCGGTAGCTGTCCCGGTCGATCCCCCAGAGCTTGAGGTCCGTCTTGGCTTTCACGGTCGCAGCCCTGGGGGTGCCGTAGATGAGCGCCAGCTCCCCGAAGCTGCCTCCCTCGCTGATGTTGGTCACCCACTCTCCGTTCACGTACACCT s panTro1.chr6_random 67018802 167 + 67355074 ACTCACCATAAGGATGCGCCGGTAGCTGTCCCGGTCGATCCCCCAGAGCTTGAGGTCCGTCTTGGCTTTCACGGTCGCAGCCCTGGGGGTGCCGTAGATGAGCGCCAGCTCCCCGAAGCTGCCTCCCTCGCTGATGTTGGTCACCCACTCTCCGTTCACGTACACCT s mm5.chr5 136456505 167 + 149219885 ACTCACCATGAGGATGCGCCTGTAGCTGTCACGGTCGATACCCCAGAGCTTGAGGTCCGTCTTGGCCTTCACGGTAGCCGCTCTGGGGGTGCCGTAGATGAGAGCCAGCTCCCCGAAGCTTCCCCCCTCACTGATGTTGGTCACCCATTCCCCGTTCACATATACCT s rn3.chr12 30529019 167 - 46649226 ACTCACCATGAGGATGCGCCTGTAGCTGTCACGGTCGATGCCCCAGAGCTTGAGGTCCGTTTTGGCCTTCACAGTAGCCGCTCTAGGGGTGCCGTAGATGAGGGCCAGCTCCCCGAAGCTTCCCCCCTCACTGATGTTGGTCACCCACTCCCCGTTCACATATACCT s canFam1.chrUn 1810572 167 + 91062872 ACTCACCATGAGGATACGCCGGTAGCTGTCCCGGTCGATGCCCCAGAGCTTGAGGTCCGTCTTGGCTTTCACGGTCGCTGCCCTGGGGGTGCCATAGATGAGCGCCAGCTCCCCAAAGCTGCCCCCTTCACTGATGCTGGTCACCCACTCTCCATTCACATACACCT s galGal2.chr14 4266139 167 + 20603938 TCTTACCATTAAAATGCGCCTGTAGCTGTCTCTGTCAATGCCCCAGAGCTTGAGATCTGTCTTGGCCTTGACTGTGGCAGCCCTGGGTGTTCCGTAGATCAGTGCCAGCTCCCCAAAGCTGCCTCCTTCTCCGATGCTGGTGACCCACTCTCCATTGACATAAACCT s fr1.chrUn 56278083 166 + 349519338 -CGTACCATGAGGATGCGTCTGTAGCTGTCTCGATCGATGCCCCACAGTTTGAGATCAGTCTTGGCTTTGACTGTGGCGGCTCTGGGGGTCCCGTAGATCAGCGCCAGTTCTCCAAAACTGCCTCCTTCCCCAATATTGGTCACCAACTCCCCATTCACATACACCT s danRer1.chr5 33147044 167 - 40038624 ACCAACCATGAGTATTCTCCTGTAGCTGTCTCTGTCAATGCCCCACAGCTTGACATTGGTCTTTGCTCTGACAGTGGCTGCTCTAGGAGTGCCGTAGATTAAAGCCAGTTCACCAAAACTGCCACCTTCTCCAATACTGGTCACCCACTCATTGTTCACATACACCT a score=6326.0 s hg17.chr7_random 748156 17 + 778964 ------------------TTGGGGAGCAAGA-GAGA s panTro1.chr6_random 67018969 17 + 67355074 ------------------TTGGGGAGCAAGA-GAGA s mm5.chr5 136456672 17 + 149219885 ------------------TTGGAGAATAGGA-GAGA s rn3.chr12 30529186 17 - 46649226 ------------------TTGGAGAATAGGA-GAGA s canFam1.chrUn 1810739 16 + 91062872 ------------------TCAGGGGATA-GT-GAGA s galGal2.chr14 4266306 36 + 20603938 ACCACAGCAAAACACAGAATGAGAAGCAAAATGAGA s fr1.chrUn 56278249 17 + 349519338 ------------------GGGAACAGAAAAA-GGGA a score=111.0 s hg17.chr7_random 748173 5 + 778964 GAAGT s panTro1.chr6_random 67018986 5 + 67355074 GAAGT s mm5.chr5 136456689 5 + 149219885 GAGAG s rn3.chr12 30529203 5 - 46649226 AAGGT s canFam1.chrUn 1810755 5 + 91062872 AATGT s galGal2.chr14 4266342 5 + 20603938 CCAGG a score=-10675.0 s hg17.chr7_random 748178 156 + 778964 GTCACGGGGGCCAGGCAGGGTGACCTCCTCTGCATCCCATACAGAAAGTCCCCCTTAGCTCTCTC----------------------------------------CAGAAGAGGGTCCCC-----GCAGG--------------GCGGGGCACAAGCCCTTTCGCTTGTGGGCAGAGCCCTGCGTTCCCCAGCAATGG-----GCCTG---TGGACCCCAGTG s panTro1.chr6_random 67018991 156 + 67355074 GTCACGGGGGCCAGGCAGGGTGACCTCCTCCGCATCCCATACAGAAAGTCCCCCTTAGCTCTCTC----------------------------------------CAGAAGAGGGTCCCT-----GCAGG--------------GCGGGGCACAAACCCTTTCGCTCGTGGGCAGAGCCCTGCGTTCCCCAGCAATGG-----GCCTA---TGGACCCCAGTG s mm5.chr5 136456694 145 + 149219885 GTCA-GTGCGACACGT-GGCTCACAATAGCTGCTTCCTCTGTGGGGGAACCCAC--AACCATCCC----------------------------------------CAGTGGAAAG----------GACAG--------------GTGCTCTGCAAG-------GCTCTTGGACCACTTCATACACACTCCTACCCTGGAGGTAACCTT---AGGCTGTCATGA s canFam1.chrUn 1810767 152 + 91062872 GTCACAGTGGC--------------------GCATCCTGCACTAGCGGCCCTCCTCCACACCCAC----------------------------------------CAGAGGGGGCCCGGT-----GAGAAGGGAACATGCAGCCGCAGCTCCCAGGCCCCCTCAACTGGGGGAGCAACTTCCCACTCCACTGCCCAAG------CCTGTCCTGGATCTCTGCT s galGal2.chr14 4266347 194 + 20603938 GTCTTAGATGC------TGTTCCCTCCTCCTGCCCATTACCTATCAAGCTACTAGCAACTTCCTTTCTACTAGTCAGTGCTGTGGACACTGAAAGAAAACAAGAGCAGAACAGCCTCCTCAATCAGTCAA--------------AAGGAGGGCAACCACCTGC-CTTGTGAACAGAATTTCAAGTCATCTTGCTTCAG-----CCCAA---TGACTGTATGTA a score=14788.0 s hg17.chr7_random 748334 56 + 778964 CTCACCCCA----------CCCCCAGCCCTGCTGAGAGCCACGGTGGGACA-GCATCAGACCTCCAC s panTro1.chr6_random 67019147 56 + 67355074 CCCACCCCA----------CCCCCAGCCCTGCTGAGAGCCACGGTGGGACA-GCATCAGACCTCCAC s mm5.chr5 136456839 56 + 149219885 CCTACTCCAAGGAACATCTATCCCAG-CCTCCTTAGAGCCACAACTGGGTA-GCA---------CAC s rn3.chr12 30529375 45 - 46649226 CCCACCTCA-----------TCTCAG-CCTACTCAGAGCCACAACTGGGCA-GCA---------CAC s canFam1.chrUn 1810929 49 + 91062872 CCCGCCTCT----------CCCCCAGCTCTGCACAGAGTGGCAGCTGGACAGGCA--------CCAT s galGal2.chr14 4266541 47 + 20603938 CCCTCCACA----------ATCCCAGCTC---------CCATGGTTAACTG-GCATCAGGTTTTCCC a score=244296.0 s hg17.chr7_random 748390 944 + 778964 AGCA----GGAGGGCCCAGCCGCCAGTGCCAATGAGACAA--CCA-CACCAGAGGCGGACGCACC-----CGGCCCCCGCTCTGCGGCACAGCG-GCCCCAGCCTGACTCCCAGGCAGTGTCTGATTCAATCCGTCAACTTCtcactca--gcctctctgggcctc-agtttccctagctgcaccgtgatgagctg-----------gagcctgtgatccccacgggg--------------------------------------------------ctctgctctgGGGACCTGT-GTGCTT--------CCTCTCCACCCCAGGCCAT-TCCTCTGTCCCCACCTCCACCAGCACACACCACTGGGCCCCGAAGGAGCCGGGCGGCCTCAAGT--GCAGACCTCTCCTGCCAGGGCCTCCCTCCCTACAGG--CAGCGCCTGAG-CTCCTCGGGCTGGAGTCTGAATGGGCGCCCTATGGCTGGGCGCTGCGGCCGAGCTGCGCCTGGGAAGGAGCCCAGACAAGATTCCCTTTCAGCCCGGGTGGGCCGCCGCCCCCGCACAGGGTGCCTACTATGCATTGAGCAT------------CACAGTTGGGTCCGTGCA-AGAATGGTGCAGATTGTTTATT-ATGCAGTGATTATGCAGATTCCGTTACTATAAATTGACACAATACACGCTTTATCCCCT----CTGGGTGTCAATGAGCTTAAAGAATAGTTCCCATTGGCAAAGCAGTTCCCATTGGTTGCATATCGGGAAAGAATGGATTGCAATGAATCATGGAATCAATTCTTACTGAAATCAATGACTCATTATCTGGATAATAACTGAGGCACAGAGTCTTCTATCTGAAAGAAAAGGCCACGCAGG-------TG-TAACTCCACAATT-AGGTACAAGTGAG-CGCTGGGGAGAACTGGTCGACCACGAACTTTCGGAGGCA-----------CAGGGGCGACTGCTGTG--CAAAGG--------------------CAGACTCT---GCCTGGCGGGGATG--TGGGGATCATCTCCACCTGGCCCACCAGGCTCCCCAGTTCCTGGAGGGAGGCTGG s panTro1.chr6_random 67019203 944 + 67355074 AGCA----GGAGGGCCGAGCCGCCAGTGCCAATGAGACAA--TCA-CACCAGAGGCGGACGCACC-----CGGCCCCCGCTCTGCGGCACAGCG-GCCCCAGCCTGCCTCCCAGGCAGTGTCTGATTCAATCCGTCAACTTCTCACTCA--GCCTCTCTGGGCCTC-AGTTTCCCTAGCGGCACCGTGATGAGCTG-----------GAGCCTGTGATCCCCACGGGG--------------------------------------------------CTCTGCTCTGGGGACCTGT-GTGCTT--------CCTCTCCACCCCAGGCCAT-TCCTCTGTCCCCACCTCCACCAGCACACACCACTGGGCCCCGAAGGAGCCGGGCGGCCTCAAGT--GCAGACCTCTCCTGCCAGGGCCTCCCTCCCTACAGG--CAGCGCCTGAG-CTCCTCGGGCTGGAGTCTGAATGGGCGCCCTATGGCTGGGCGCTGCGGCCGAGCTGCGCCTGGGAAGGAGCCCAGACAAGATTCCCTTTCAGCCAGGGTGGGCCGCCGCCCCCGCACAGGGTGCCTACTATGCATTGAGCAT------------CACAGTCGGGTCCGTGCA-AGAATGGTGCAGATTGTTTATT-ATGCAGTGATTATGCAGATTCGGTTACTATAAATTGACACAATACACGCTTTATCCCCT----CTGGGTGTCAATGAGCTTAAAGAATAGTTCCCATTGGCAAAGCAGTTCCCATTGGTTGCCTATCGGGAAAGAATGGATTGCGATGAATCATGGAATCAATTCTTACTGAAATCAATGACTCATTATCTGGATAATAACTGAGGCACAGAGTCTTCTATCTGAAAGAAAAGGCCACGCAGG-------TG-TAACTCCACAATT-AGGTGCAAGCGAG-CGCTGGGGAGAACTGGTCGACCACGAACTTTCGGGGGCA-----------CAGGGGCGACTGCTGTG--CAAAGG--------------------CAGACTCC---GCCTGGCGGGGATG--TGGGGATCATCTCCACCTGGCCCACCAGGCTCCCCAGTTCCTGGAGGGACGCTGG s mm5.chr5 136456895 909 + 149219885 AGC-----------------------CACCAAAGAATTGG--TCAGAACCAGAGGGCAA--------------------------AACACAGTGTGTTCCAG-CTACCTCCTAGGCTGGTTACCCATCCACCCATCA-----TCTCTCA--GTCTCTCTGGGCCTC-AGTTTTTCCAACTATACCCTAATGAGTCGCTCTACAGTTACAGAGAAGGATTCAGACGAAC--------------------------------------------------ATGCTCTCTCTTGCCTTTT-CTGTTTACAAAATGCCTCTCC-TCTCTGGCCAT-TCAGCGATC----CCTCTGCTTGGGTATCCCTCTTGTCCC------ATCCCTGTGGGCACACACTGACTGTCCCCTTCTCTCTGGGCCTTTGCCACCAAGGC--AAGCACCCAAGTCTTTTTTGGCTGTTGGCCTAGTTGA-GCCCCCTGGCCAGGCACCACTACCAAGCGGCACC-GAGAAGGAGCCAGGACAAGATGCCCTTTCAGGCCGCGTGGACAACGCGCCCTGCACAGTGTGCACACTATGCATGGACCTTGCGCAGCCTACACCCAGCCGGG-----GCACAGAATGG-GCAGATTGTTCGTTCCCAGGGCGATTATGCAG-CTCGGTTACTATAAATTGACACAATGCACGCTTTATCCCA-----CAGCGTCTCAATGAGCGTAAAGAACCGTTCCCACTGCTAAAAC----------GGGTGCGTAC--GCAGAGAATGGATTGTGATGAATCATGGAAGCGATTCTTATTGAAATCAATGTCTCATTATCCGG-TAATAACTGAGGCACAGAGATTTCTGTCTGAAAGAGAACGCCTCGCAGGTGATGGTTG-TAACTCCACGATG-AAGTG--AGCAAGACATGGAAGGGGACTGGCTAGCCACAAAGAT--GGGGGTT-----------AGGGGAGGATAATAGTTCCCAAAGA--------------------CAGAACTCAGGGACCAGATCGGGTG--TGTGCTCC--TCCCACCTGGCCTGGTGGGTTCCCCAAACCCCAAAGGGATGTGGG s rn3.chr12 30529420 939 - 46649226 AAC-----ACAGCACACAGC------CATCAAAGAACTGG--TCAGGATCAGAGGGCAA--------------------------AGCACAGTGTGTCCCAG-CTACCTCCTAGGCTGGTTACCCATCCAGTAAGCA-----TCTCTCA--GGCTCTCTGGACCTC-AGTTTTTCCAACTGTACCCCAGTTAGTCACTCTCC--------------AACTACACAGAGAAAGATCCAGATAAATATTCTCTCTCTTGCCTTTTCCATATACAAAATGCCTCTCTTCTCTGGCCATTCAGTGATC--------CGTCTGC----TTGAGTAT-CCCTCTTGCCCCACCCCTGTGGGCACACACTGACTGTCCC--------------------------------CCTTCTCCTCTGGGCCTGTGCCACCAAGGC--AAGCACCCAAG--TCTTTTGGCTGTTGGCCTAGTTGA-GCCCCCTGGCCAGGCACCACTACCAAGCTGCGCC-GAGAAGGAGCCAGGACAAGATTCTCTTTCAGGCCGCGTGGACAACGCGCCCTGCACAGTGTGCACACTATGCATGGGCCTTGCGCGGCCCACACCCAGCCAGG-----GCACAGAATGG-GCAGATTGTTCATTCTCAGCGCGATTATGCAG-CTCGGTTACTATAAATTGACACAATGCATGCTTTATCCTATCCCACAGCGTCTCAATGAGCATACAGAACCGTTCCCACTGCTACAAC----------GGGTGCGTAT--CCAGAGAATGGATTGTGATGAATCATGGAAGCGATTCTTATTGAAATCAATGTCTCATTATCCGG-TGATAACTGAGGCACAGAGATTTCTGTCTGAAAGAGAACGCCTCGCAGGTGATGGTCG-TAACGCCATGATG-AAGTG--AGCGAGACATGGAAGGAGACTGGCTAGCCACAAAGAT--GGGGGGAGGGGGGGTGGGTAGGGAGGACAGTAGTTCCCAAAGA--------------------CAGAGCTCAGGGACCAGATGGG-TG--TGTGCACTCTTCCTACCTGGCCTGGTGGGTTCCCTAAACCCTAAAGGGATATGG- s canFam1.chrUn 1810978 869 + 91062872 GGTGCCCTCGAGTCCCCACCCTCCG-TCACAGTGAGACAGGCCCA-GGCCAGAGGCGGAAGCACTGTCTAGGGCTCCTGGCC---TGTACAGAA-GCCCTGC-CTGCCTCCCTGGCCAG----CCTTCAAGTCATCA-----GCCTTGGATGGGTCTCAGGACCCAGAGCCTCCCCAGCTGCA-CACAGTGGGTCA------------GACTTAGGGCTTCCATAGGC--------------------------------------------------ATCC----------------CTGCTGAC------ACCCTCC----CAGGCTCTGCCCACTGCCCCCAGTTCCAGCAGCACACATGCCCGGACCA------------------GCCAGC--AAGGAGCCATGCTGACGGGGCCTCCTGC-CTGGGGCCACAGCACCC-AG-CTCCCATGGCCTGTGGCCG-GTGGA-GACGC-TGCCGGGGCGCCAATG--AGGCCCAGCT-GAGAGGGG--------------CCCTTTCAGCCTGCATGGGTGA----CCCGGCACAGTGCTCCCACTATGCATTGACCCTG-----------CACGTTCCGTATCGCGCA-AGAATAGTACAGATTGTTTATT-ATGCGGTGCCTATACAGATTCGGTTACTATAAATTGACACAACGCATGCTTTATTCCCC----CAGCGTGTCAATGAGCCTGCAGAACAGTGCCCATTGCCAAAAT----------GGGTGCACGTCGGGAAAGATCGCATTGCGGTGAATCATGGACGCAATTCTTACTGAAATCAATGACTCATTATCTGCACAATAACTGAGGCACAGAATCGCGTATCCGCAAGAAAA---CATGCAGG-------TGATAACTCCGTGATACATGTG--AGCAAG-GGTCCCAGGAAGCTG-----------------GGTGGGA-----------AGGACACCACGGCTGTG--CAGAGGTGAAGCTGCCTGTGACCCTATAAGCTTC---CACCAGCCTGGCTGAACACAGAGTACCTGCTCCTGGGCC--TGTGTCCTCGTGCACCCAGGTCGG------ a score=6070.0 s hg17.chr7_random 749334 36 + 778964 AGCAG--GATTACGGGGCAGAAGAAA----CACCAGCTTCCC s panTro1.chr6_random 67020147 36 + 67355074 AGCAG--GATTACGGGGCAGAAGAAA----CACCAGCTTCCC s rn3.chr12 30530359 36 - 46649226 ----G--GCACAGGGAGGGGAAGAGAAGGGCACAGGTTGCCC s canFam1.chrUn 1811847 38 + 91062872 AGCAGCTGGGGACCTGGGAGAGGAGA----CGCCAGCTTCCA a score=25151.0 s hg17.chr7_random 749370 180 + 778964 CCCAGTGATCCCCTCCAGGAATCAGAA-GACGGCCGTCCTTCCACGGAGCCAGAGAGTACCCACCCGCGCGTGCAGGGATACGTGGAGGAGGCAGC----AACTCCAGCGTTTTAGGGGCGAGGGGACCTCAGAGAATGCCCTCCAGAACCTCTGCCTCTTG-CTTCTCAAAGGGGACCCAGAGCT s panTro1.chr6_random 67020183 180 + 67355074 CCCAGTGATCCCCTCCAGGAATCAGAA-GATGGCCGTCCTTCCATGGAGCCAGAGAGTACCCACCCGCGCGTGCAGGGATACGTGGAGGAGGCAGC----AACTCCAGCGTTTTAGGGGCGAGGGGACCTCAGAGAATGCCCTCCAGAACCTCTGCCTCTTG-CTTCTCAAAGGGGACCCAGAGCT s canFam1.chrUn 1811885 162 + 91062872 CACGATGAGGCCCTCGAGGAACCAGGACTATGTCCCATCCTC-----------------CCCACAAG-----GCAGGGACACAGGAA--AGACAACCCAAGACCCAGGAATGTAAGGGGTGCAAGGACCTCAGACAACACCCTCCAGAACCGGTGCCCCTGGTTTTCCCAAAGGGGACCCGGGCCt a score=9372.0 s hg17.chr7_random 749550 101 + 778964 AGGGGAGGACTGGCGATGAAGCCGGGGGAAGGGCCTGCGATGGCCGGGGCACAGCCTGGCCTGCGGGCGATGAAGCTGGAGAGGGCCTGCAATGGCCTGGG s panTro1.chr6_random 67020363 101 + 67355074 AGGGGAGGACTGGCGATGAAGCTGGGGGAAAGGCCTGCGATGGCCGGGGCACAGCCTGGCCGGCGGGCGATGAAGCTGGAGAGGGCCTGCAATGGCCTGGG a score=30792.0 s hg17.chr7_random 749651 273 + 778964 CACAGCCTGGCCTTCCGCCTCGCAGTGGACACTCCCACTTTGCCTAAGGT-TTTGTCAAAACCAGTTTATGGAGGCAGAACTTGCAAATAGG-AACGTGCCCAACTCT-----TGCAGCACAGTGAGT-TTCACATCGCTCAGATCGGGGCCTCACAAACTCCCAGGGGACTCTTCCCCAGAGGGATCCGGAGCTC-ACCCTGTGGGTCTCACCGTGTCTATCCACGCTGCAGGTGACGGACTCCAGGGTCCACAGCACGTCGTGCTGCCAGGAGCATCCCT s panTro1.chr6_random 67020464 273 + 67355074 CACAGCCTGGCCTTCCGCCTCGCAGCGGACACTCCCACTTTGCCTAAGGT-TTTGTCAAAACCAGTTTATGGAGGCAGAACTTGCAAATAGG-AACGTGCCCAACTCT-----TGCAGCACAGTGAGT-TTCACATCGCTCAGATCGGGGCCTCACAAACTCCCAGGGGACTCTTCCCCAGAGGGATCCAGAGCTC-ACCCTGTGGGTCTCACCGTGTCTATCCACGCTGCGGGTGACGGACTCCAGGGTCCACAGCACGTCGTGCTGCCAGGAGCATCCCT s mm5.chr5 136458112 241 + 149219885 CACAGCCTCCCCTCCCGACTCAGGGCTGTCACTGCCACCTTGCCTGTGCTCCTTGCGGGAACCTATGCATGCAGT--GAGTTCTCAGGTTGGAAACCTCCACTAACCTGAACATGGAGCTCAGTGAGTATGCACA--------------GCC-------CTCCCAATG---TCACCTTCAG-----TCTGTCACTTGGCTCTGTGAGCCTCAGTGTGCTCATCCAGCCTA-----GATGGGCTGTCATGCCCATC-----TGATGCTGCCAGGATCATTGCT a score=5246.0 s hg17.chr7_random 749924 58 + 778964 GTACGTGACATGCACGCCTGGGGTGGCAGTCGCCACTGGCACAGCTTCAGGAGGCATT s panTro1.chr6_random 67020737 58 + 67355074 GTACGTGACATGCACGCCTGGGGTGGCACTCACCACTGGCACAGCTTCAGGAGGCATT a score=2137.0 s hg17.chr7_random 749982 9 + 778964 CTGCACTAA s panTro1.chr6_random 67020795 9 + 67355074 CTGCACTAA s danRer1.chrNA 62510242 9 + 390413307 CTGCTCTAA a score=14113.0 s hg17.chr7_random 749991 101 + 778964 ACAC--------------CATCACCCTC--CAGCACCCTCCAGACTAAACACCATCACCCT----CCCTCCAGCACCCTCCGCACTAAACACCATCACCCTC-CAGCACCCTCCACACTAAA--- s panTro1.chr6_random 67020804 101 + 67355074 ACAC--------------CATCACCCTC--CAGCACCCTCCAGACTAAACACCATCACCCT----CCCTCCAGCACCCTCTGCACTAAACACCATCACCCTC-CAGCACCCTCCACACTAAA--- s mm5.chr8 35382464 94 - 128688707 ACAC--------------CAGAGTCCAC--CAGCACCCTCCACAGC--------TCAGCCCAGAGTCCGCCAGCACCCTCCACAGCTCAGCCCAGAGTCTGC-CAGCACCCTCCACAGC------ s danRer1.chrNA 62510251 121 + 390413307 ACACTGCGACAGTTATTGCTCCACCCACTGCATCTCCCACCATGCCATCCACTACACTATC----CACAGTAGCACCCACTGCACCACCCACCACACCCCCCACAGTTCCCTCCACACTGCCATA a score=-4961.0 s hg17.chr7_random 750092 220 + 778964 ---------------------------------------------------------------------------------------------CACCATCACCCT----CCCTCCAGCACCCTCCACA---CTAAACACC---------------------------------ATCGCCCTCCCTCCAGCACCCTCCACACTAAACACCATCGCCCTCACT---CCAGCACCCTCCGCTCTAAACACCATCGCCCT----CCCTCCAGCACCCTCCACACTAAACACCATCACCCT----CCCTCCAGCACCCTCCACACTAAACACCATCACC----CTCCAGCACCCTCCACACT------AAATACCATCA s panTro1.chr6_random 67020905 180 + 67355074 ---------------------------------------------------------------------------------------------TACCATCACCCT----CCCTCCAGCACCCTCCGCA---CTAAACACC---------------------------------ATCA----CCCTCCAGCACCCTCCACA---------------------------------------CTAAATACCATCACCCT----CCCTCCAGCACCCTCCACACGAAACACCATCACCCT----CCCTCCAGCACCCTCCGCACTAAACACCATCACC----CTCCAGCACCCTCCACTCT------AAATACCATCA s mm5.chr8 35382558 195 - 128688707 --------------------------------------------------------------------------------------------------TCAGCCTAGAGTCCGCCAGCACCCTCCACG---GCTCAGCCC---------------------------------AGAG----TCCACCAGCACCCTCCACA-------GCTCAGCCCAGAGTCTGCCAGCACC-------CTCCACAGC-TCAGCCTAGAGTCCACCAGCACCCTCCACGGC--------TCAGCCCAGAGTCTGCCAGCACCCTCCACAGCTCAGCCTAGAGTC----CGCCAGCACCCTCCACGGC--------------TCA s rn3.chr16 8928099 230 + 90224819 ---------------------------------------------------------------------------------------------CACACCTATCCT----TCCTGAGGTACAATCCACC---ACAGACACC---------------------------------ATCAGCACAACTGAGGTACAATCCACCATAGACACCATCAGCACAACT---GAGGTACAATCCACCACAGACACCATCAGCAC----AACTGAGGTACAATCCACCACAGACACCATCAGCAC----AACTGAGGTACAATCCACCACAGACACCATCAGCACAACTGAGGTACAATCCACAGCAGTGATAGACACCATCA s danRer1.chrNA 62510372 353 + 390413307 CACCATGCCACCCACTTCTCCAAACACTGTGCCACCAATATCTCCACCCACTGCAACCCCCACTATGCCATCCATTGTTCCACCCACTGCACCACCCACCACACC----TCCTACAGCACCCCCCACGCTTCCATACACCATGCCACCCACTTCTCCAAACACTGCGCCACCTATTGCTTCACCTACTGCAACCCCCACCATGCCATCCACCACACCTACT---ACAATACCACCCACTGCACCACCCACCACACC----CCCCACAGAACCCCCCATGCTGCCATACACCATGCC----ACCCACTGCTCTAAACACTGCGACAGCTATTGCTCCACCCACTGCTTCTCCCACTAT------GCCATCCATTA a score=3581.0 s hg17.chr7_random 750159 33 + 778964 CTAAACACCATCGCC----CTCACTCCAGCACCCTCC s panTro1.chr6_random 67021040 29 + 67355074 CTAAACACCATCACC--------CTCCAGCACCCTCC s mm5.chr8 35382621 28 - 128688707 CTCAGC-CCAGAGTC--------TGCCAGCACCCTCC s rn3.chr16 8928166 33 + 90224819 ATAGACACCATCAGC----ACAACTGAGGTACAATCC s danRer1.chrNA 62510568 33 + 390413307 ----ATGCCATCCACCACACCTACTACAATACCACCC a score=960.0 s hg17.chr7_random 750192 3 + 778964 GCT s panTro1.chr6_random 67021069 3 + 67355074 ACT s rn3.chr16 8928199 3 + 90224819 ACC s danRer1.chrNA 62510601 3 + 390413307 ACT a score=9317.0 s hg17.chr7_random 750312 64 + 778964 -CCCT----CCCTC--CAGCACCCTCCACACTAAACACCATCACCCTC-CAGCACCCTCCACA---CTAAACACC s panTro1.chr6_random 67021085 64 + 67355074 -CCCT----CCCTC--CAGCACCCTCTGCACTAAACACCATCACCCTC-CAGCACCCTCCAGA---CTAAACACC s mm5.chr8 35382753 68 - 128688707 -GCCCAGAGTCCAC--CAGCACCCTCCACAGCTCAGCCCAGAGTCTGC-CAGCACCCTCCACA--GCTCAGCCC- s danRer1.chrNA 62510725 71 + 390413307 CACCA----TCCACAGTACCACCTACTGCACCACCCACCACAGCTCCCACAGTACCCCCCACGCTGCCATACACC a score=-9029.0 s hg17.chr7_random 750376 121 + 778964 --------------------------------------------------ATCACCCTC-----------CAGCACCCTCCACACT---AGATACCATCACCCTCCAGCACCCTCCGCA----------------CCAAA---CACCATCACCCTCCA-------CA-------CTAAA---CATCATCACCCTCC------------------CTCCAGCACCCTCCGCA-------CTAAA---CAC s panTro1.chr6_random 67021049 67 + 67355074 --------------------------------------------------ATCACCCTC-----------CAGCACCCTCCACTCT---AAATAC------------------------------------------------------------------------------------------CATCACCCTCC------------------CTCCAGCACCCTCTGCA-------CTAAA---CAC s mm5.chr8 35382821 169 - 128688707 --------------------------------------------------AGAGTCTGC-----------CAGCACCCTCCACAGC---TCAGCCCAGAGTCCACCAGCACCCTCCACGGCTCA---------GCCCAGAGTCTGCCAGCACCCTCCA-------CAGCTCAGCCTAGAGTCCACCAGCACCCTCCACGGCTCAGCCCAGAGTTCGCCAGCACCCTCCACGGCTCAGCCCAGAGTCCAC s danRer1.chrNA 62510796 203 + 390413307 GTGCCACCCACTTCTCCAAACACTGTGCCACCTATTGCTCCAACCACTGCACCACCCACCACATCTTCTACAGTACCCCCCACGCTGCCATACACCAT-GCCACCCACTGCTCTAAACACTGCAACAGTTATTGCCCCACCCACTTCATCTCCCACCATGGCATCCA-------CTA--------CACTATCCA--------------------TGGTAGCACCCACTGCA-------CCACC---CAC a score=0.0 s hg17.chr7_random 750497 3 + 778964 TAT a score=38.0 s hg17.chr7_random 750497 1 + 778964 T s panTro1.chr6_random 67021116 1 + 67355074 C s mm5.chr8 35382990 1 - 128688707 C a score=136.0 s hg17.chr7_random 750498 2 + 778964 AT s panTro1.chr6_random 67021149 2 + 67355074 AT s mm5.chr8 35382991 2 - 128688707 AG a score=8038.0 s hg17.chr7_random 750500 32 + 778964 CACCCTC------------------CCTCCAGCACCCTCTGCACTTCTGT s panTro1.chr6_random 67021151 32 + 67355074 CACCCTC------------------CCTCCAGCACCCTCTGCACTTCTGT s mm5.chr8 35382993 50 - 128688707 CACCCTCCACGGCTCAGCCCAGAGTCCACCAGCACCCTCCACGGCTCAGC s danRer1.chrNA 62510999 32 + 390413307 CACACCC------------------CCTACAGCGCCCCCTACGCTGCCAT a score=774.0 s hg17.chr7_random 750532 5 + 778964 TCCGA s panTro1.chr6_random 67021183 5 + 67355074 TCCGA s mm5.chr8 35383043 5 - 128688707 CCAGA a score=32202.0 s hg17.chr7_random 750537 340 + 778964 TGCAGGGGCCTCTTGCTGAGCCACGAAAGCAGTGTGGACTCAGAAGATGTGAATCTGAGGTCGGGAGGGGTTTGCTTGACATGGGAGAGCCAGGGAGGCGGGTAACATCTTGTGCCCAAGGAGGTGAGTGAGCCTCTTGGCCCCTTCAGGGAATGAGGACACCACCCCCTCGAATGGCTGCCCAGGCAAGTGGCAGGACATCCCCCTGCCTTGGCAAAGAGGATGGGGGCTCTGGGAGCAGAGAAGGGTGAGTCTCCACAGAGCCAGCCCGGGACGGCCGCACCTCCCAGCTTTCTGGGATTCTGTCTCAAAGCGGGGATCCGTGGCTGCTGCCGCTGCA s panTro1.chr6_random 67021188 340 + 67355074 TGCAGGGGCCTCTTGCTGAGCCACGGAAGCAGTGTGGACTCAGAAGATGTGAATCTGAGGTCGGGAGGGGTTTGCTTGACATGGGAGAGCCAGGGAGGCGGGTGACATCTTGTGCCCAAGGAGGTGAGTGAGCCTCTTGGCCCCTTCAGGGAATGAGGACACCACCCCCTTGAATGGCTGCCCAGGCAAGTGGCAGGACATCCCCCTGCCTTGGCAAAGAGGATGGGGGCCCTGGGAGCAGAGAAGGGTGAGTCTCCACAGAGCCAGCCCGGGACGGCCGCACCTCCCAGCTTTCTGGGATTCTGTCTCAAAGTGGGGATCCGTGGCTGCTGCCGCTGCA a score=6278.0 s hg17.chr7_random 750877 48 + 778964 GGCAGGACCCAGGGAAGCTGGACCAGGACGCGCTGCCCATGAGGCCTG s panTro1.chr6_random 67021528 48 + 67355074 GGCAGGACCCAGGGAAGCTGGACCAGGACGCGCTGCCCATGAGGTCTG s rn3.chr12 30531847 47 - 46649226 GACATGACCAAGGGAAGAGGGACCCTG-TGCAGTGACTACCCTCCCTG a score=0.0 s hg17.chr7_random 750925 4 + 778964 GAGA a score=382.0 s hg17.chr7_random 750925 4 + 778964 GAGA s panTro1.chr6_random 67021576 4 + 67355074 GAGA a score=9626.0 s hg17.chr7_random 750929 30 + 778964 AGCCCAAGGCCT----CCGAGAGCTCCCTCCGCA s panTro1.chr6_random 67021580 30 + 67355074 AGCCCAAGGCCT----CCGAGAGCTCCCTCCGCA s mm5.chr5 136459536 34 + 149219885 AGCCCAGAGCCTCAAGCCTAGGGGATCTCCCACA s rn3.chr12 30531894 34 - 46649226 AGCCCAGAGCCTCAAGCCTAGGGGATCTCCCACA a score=79849.0 s hg17.chr7_random 750959 176 + 778964 GCCTCAGAGGAAGCCATTGTGCGGGTCCCAC-AGACGGCCAGGGCCACACTGTGCTCGGCCGCCCGGAGGACAAAGGGGCCATCCTTCTCAGGACACTGGCCACTGTCACCACTCCCGGCGCAGTGC-GGGCCCCACCCCAGCTGGTACGCAAAGGGGCTACTTCTTGTTGTGTTTCA s panTro1.chr6_random 67021610 176 + 67355074 GCCTCAGAGGAAGCCATTGTGCGGGTCCCAC-AGACGGCCAGGGCCACACTGTGCTCGGCCGCCCGGAGGACAAAGGGGCCATCCTTCTCAGGACACTGGCCACTGTCACCACTCCCGGCGCAGTGC-GGGCCCCACCCCAGCTGGTACGCAAAGGGGCTACTTCTTGTTGTGTTTCA s mm5.chr5 136459570 131 + 149219885 GTGTCAGAGGAAACCATTGTGT-------------CTTCCAAGGCCA---------------CCCGGGGGACAAA-GGGCCATCCTTCTGTGCACACTGGCCTCTGTCACAGCTC----------------CCCCA-CCCAGCTGGTACGCAAAGGGGCTAC-TCTTGTTTGGTTCCA s rn3.chr12 30531928 131 - 46649226 GTGTCAGAGGAAACCATTGTGT-------------CCTCCAAGGCCA---------------CCCGGAGGACAAA-GGGCCATCCTTCTGTGCACACTGGCCTCTGTCACAGCTC----------------CCCCA-CCCAGCTGGTACGCAAAGGGGCTAC-TCTTGTTTGGTTCCA s canFam1.chrUn 1812728 178 + 91062872 GCCTCAGAGAAAACCATTGTGTGGAGCCCCCGATGGGCCCAGGGCCACACTGCAGGCCGCCCCACACAGCACAAAGGGGCCATCCTTCTCAGGACACTGGCTTCTGTCACCGCAGCCAGCGCAGCACGGGGCCCCACCCCAGCTGGCACGCAAGGGGGCTACTTCTTGCTTTGTCTCA a score=91.0 s hg17.chr7_random 751135 1 + 778964 t s canFam1.chrUn 1812906 1 + 91062872 T a score=27561.0 s hg17.chr7_random 751135 302 + 778964 tttttttgttttctctcttttttttttttgagatggagtttcgctcttgttcctcaggctggagtgcaatggtgcgatctcggctcaccgcaacctctgcctcccaggttcaagcgattctcccgcctcagcctcccggattacaggcaactgccaccacgcccggctaattttgtatttttagtagagacggggtttctccatgttggtcaggctggtctcaaactcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcccagct s panTro1.chr6_random 67021786 299 + 67355074 tttttttgttttct---ttttttttttttgagacggagtttcgctcttgttcctcaggctggagtgcaatggtgcgatctcggctcaccgcaacctctgcctcccaggttcaagcgattctcccgcctcagcctcccggattacaggcaactgccaccacacccggctaattttgtatttttagtagagacggggtttctccgtgttggtcaggctggtctcaaactcctgacctcaggtgatcctcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcccagct a score=546.0 s hg17.chr7_random 751437 1 + 778964 T s panTro1.chr6_random 67022085 1 + 67355074 T s mm5.chr5 136459714 1 + 149219885 T s rn3.chr12 30532072 1 - 46649226 T a score=29270.0 s hg17.chr7_random 751438 99 + 778964 CTCTTCTTTTAAAAGAAAAAACAATGGGGGTCCCCCGCGGGGCAGCATTTACA-CCCCACCA-TCACTGCAGCTTCTCTGGC---GCC--GAGCTCACACCTGGCT s panTro1.chr6_random 67022086 99 + 67355074 CTCTTCTTTTAAAAGAAAAAACAATGGGGGTCCCCCGCGGGGCAGCATTTACA-TCCCACCA-TCAGTGCAGCTTCTCTGGC---GCG--GAGCTCACACCTGGCT s mm5.chr5 136459715 98 + 149219885 TTCTTCCTTTAGGAG-AAAAATAGTGGGAGG-CCCCACTGTGCCACA-TTATG-CTACACTAGGGACCAAGGGTCCTCCAGCTGAGCT--GAGC-CTCTCCT-GCC s rn3.chr12 30532073 98 - 46649226 TTCTTCCTTTAGGAG-AAAAATGGTGGGAGG-CCCCACTGAGTCATA-TTATG-CCACACTAGGGACCAAGGGTCGTCCAGCTGAGCC--CAGC-ATCTTCT-ACC s canFam1.chrUn 1812919 104 + 91062872 TTCTTCTTTTAGAAG-AAAAATGGTGGGAGG-CCCCACTGGGCTACACTTGTGTTCCCACCATTGACAGAGACTTCTCCGGCTGAACCCAGAGCTCCCACCCGGCT a score=4489.0 s hg17.chr7_random 751537 17 + 778964 CTGCCCTGCCCCCTGCC s panTro1.chr6_random 67022185 17 + 67355074 CTGCCCTGCCCCCTGCC s mm5.chr5 136459813 17 + 149219885 CTGCCCTGCCTGCCTTC s rn3.chr12 30532171 10 - 46649226 CTGCCCTGCC------- a score=1216.0 s hg17.chr7_random 751554 7 + 778964 CACCTTC s mm5.chr5 136459830 7 + 149219885 CTCCTTC s rn3.chr12 30532181 7 - 46649226 TGCCTTC a score=558.0 s hg17.chr7_random 751561 23 + 778964 ACTCGCTCACCCTCTGTGTTTAG s mm5.chr5 136459837 18 + 149219885 -----CTGCCTGTCTCTGTTTAG a score=8166.0 s hg17.chr7_random 751645 91 + 778964 CACCTTCACTCGCTCACCCTCTGTGTTTAGAAGTCAATGGTGGGACAGGGGTGCCAGGAGCTGGGGGAGGCACACGGGCAGGCCCCCCATT s panTro1.chr6_random 67022202 91 + 67355074 CACCTTCACTCGCTCACCCTCTGTGTTTAGAAGTCAATGGTGGGACAGGGGTGCCAGGAGCTGGGGGAGGTGCATGGGCAGGCCCCCCACC a score=13305.0 s hg17.chr7_random 751736 148 + 778964 CACCTTCACTCGCTCACCCTCTGTGTTTAGAAGTCAATGGTGGGACAGGGGTGCCAAGAGCTGGGGGAGGCGCACGGGCAGGCCCCCCATTCACCTTCACTCGCTCACCCTCTGTGTTTAGAAGTCAATGGTGGGACAGgggtgccag s panTro1.chr6_random 67022202 148 + 67355074 CACCTTCACTCGCTCACCCTCTGTGTTTAGAAGTCAATGGTGGGACAGGGGTGCCAGGAGCTGGGGGAGGTGCATGGGCAGGCCCCCCACCCACCTTCACTCGCTCACCCTCTGTGTTtagaagtagatggtgggacaggggtgccag a score=19979.0 s hg17.chr7_random 751884 149 + 778964 gagctgggggaggcgcatgggcagggagtgtgtaatgtggacagagcttcagtttaagaagacaagaacatttgggaaatggacagtggtgacggttgtaaaacaacgtgaatattcttaatgccaccgaactgcaca-----aaatggttaga s panTro1.chr6_random 67022350 149 + 67355074 gagctgggggaggcgcatgggcagggagtgtgtaatgcggacagagcttcagtttaagaagacaagaacattcgggaaatggacagtggtgacggttgtaaaacaacgtgaatatgcttaatgccaccgaactgcaca-----gaatggttaga s canFam1.chrUn 1815067 145 + 91062872 gagtagaaggtggggctagggctgggagagca-ggtggggtcaagg-----ggtcatggggac-agaatgttctggagatggacag-ggggacagtggcccagccatgggaatgtgcttggtgccctc-aactggacacctggaaatggttaga a score=30798.0 s hg17.chr7_random 752033 340 + 778964 atggtcagtgtggtgtgtcttttactacaattaaaGTAGggccgagggcagtggctcatacctgtcatcacagcactttgggaagcccaggcgggaggattgcttgaagccaggagtctgagaccagcctgggcaacacagcaagaccccgtctctatgaaaaactttaaaattagctggacgtggtggtgcacagtggtagtcccagcttctcgggaggatcgcttgagcccaggagttcaaggctgcaatgagctatgatcacgccaccgcactcccagcctgggcgacagagcgagaccccatctcaaaaaattaaaaaaCGAATTTTAAAAACACA s panTro1.chr6_random 67022499 339 + 67355074 atggtcagtgtggcgtgtcttttactacaattaaaGTAGggccgagggcagtggctcatacctgtcatcacagcactttgggaagcccaggcgggaggattgcttgaagccaggagtctgagaccagcctgggcaacatagcaagaccccgtctctatgaaaaactttaaaattagctggacttggtggtgcacagcggtagtcccagcttctcgggaggatcgcttgagcccaggagttcaaggctgcaatgagctatgatcacgccactgcactcc-agcctgggcgacagagcgagaccccatctcaaaaaacgaaaaaacaaaTTTTAAAAACACA a score=1861.0 s hg17.chr7_random 752373 13 + 778964 CAGAACACAAGAC s panTro1.chr6_random 67022838 13 + 67355074 CAGAACACAAGAC s canFam1.chrUn 1815271 13 + 91062872 CAGAGCTTCAGGT a score=17904.0 s hg17.chr7_random 752386 288 + 778964 ACAACCTGAATAACATCTGAT--CAGATCACCAAGC-----TGAGGCGCCCTGCTCCGGGGTACACCCA--GCTGCCTGGCGGTGCTCCCCAGCCCCCCAGAAAGAGCTCTTCCCCCAGACGT--GTTGTGTGAAACCGAGGGAAGCCCGGAACGGCC-AGCGTCAGTGGGGACGTCGTGA--TGCCTGGGACGGGGAGCA-----AAAAGAGGGAGTC--GGGATAACGG--GCCCAAAAACAATCAGGGGAAGAGTCGAGCCCCAAACAGGGCTTGGAAGGGAGCTACGTTCCCAGGCCTGCAAAGTCA s panTro1.chr6_random 67022851 290 + 67355074 ACAACCTGAATAACATCTGAT--CAGATCACCAAGC-----CGAGGCGCCCTGCTCCGGGGTACACCCA--GCTGCCTGGCGGTGCTCCCCAGCCCCCCAGAAAGAGCTCTTCCCCCAGACGC--GTTGTGTGAAACCGAGGGAAGCCCGGAACGGCC-AGCGTCAGTGGGGACGTCGTGA--CGCCTGGGACGGGGAGCA-----AAAAGAGGGAGTC--GGGATAACAGAGGCCCAAAAACAATCAGGGGAAGAGTCGAGCCCCAAACACGGCTTGGAAGGGAGCTATGTTCCCGGGCCTGCAAAGTCA s rn3.chr12 30535083 238 - 46649226 ACAAACTGAACAGTCCCCAAC--CCAACAGCCAGACAAGATAGAGAAGCCCAGCTCCCGGGTGCACACAGTGCTGCCAGGGAGGG-----AAG-----CAGGACGAGCTTCTTC-----------------TGAAACAGGAGGAATCCAG--CCGACCTAAAGCTCACGGGGACAGAGTTAACAGGCAGGGATGGGGGGCACCCCCAAAACAAGAAGTCTAGGGACAACTA------------------GGAAAGACCCCAGACCC-----------------------CATTCCCAACCTTGTATGCCT- s canFam1.chrUn 1815284 233 + 91062872 ACCTGCTGAGTAACAGCTGATGGTGACCCACAGAGC-----CCAACGGCCATGCCCTGAGGCAC-CCCG--TCT----------------CAG------GGACATAGCTCAGAGCTCAGAGGCTGGACACTGGGAACCGGGTGG-----GCAGGGGCC-GGGGT--GGGGGGGCATCCCAG--CACAAAGGA--GGGTCCG-----AAAATAGTGAA----GGCCTCGCAG------------GATTAGGG--AGGGCTGGGCCTCAGACA------------GAACTACGTTCCTGAGCCCTAAAATCG- a score=91.0 s hg17.chr7_random 752673 1 + 778964 A s galGal2.chr14 4270528 1 + 20603938 A a score=82679.0 s hg17.chr7_random 752674 209 + 778964 GCAGCTGAGTGTCCTTTT----------------AAATAGAAATGCTATGTTCCATGAAT-AAAATA--CATTGG-AAGATATTTTTATACTTAGAAAAATGGATTATAGCTCTTGGCA---ACACACGGACGGCAGCAGGCACTTTCGGAGTCTC--TGGAAAACCGTAA-TTCAAACTGAACCTGGTGCTCTTGGCATTTTGTC--ACCTGGCCGTCCCCCTG-GACG-----CTGCTGGT s panTro1.chr6_random 67023141 209 + 67355074 GCAGCTGAGTGTCCTTTT----------------AAATAGAAATGCTATGTTCCATGAAT-AAAATA--CATTGG-CAGATATTTTTATACTTAGAAAAATGGATTATAGCTCTTGGCA---ACACACGGACGGCAGCAGGCACTTTCGGAGTCTC--TGGAAAACCGTAA-TTCAAACTGAACCTGGTGCTCTTGGCATTTTGTC--ACCTGGCCGTCCCCCTG-GACG-----CCGCTGGT s mm5.chr5 136462932 185 + 149219885 GCAGTTGAGTGTCCTTTT----------------CGGCGGAAATGC--TGTCCCATGAAT-AAAATA--AATTGGAAAAATATTTCTCTGC-TAGAAAACTGGGTTCTAGTTCTTGGCAAGCAAACACCCACTGC--CTAGCATTT----AGTCTCTGTGGAAAGCCATGA-TTTTAACTAAGACTGA----------ACTTTG------------GCCCTCCTG-GTC------CTCCTAGA s rn3.chr12 30535321 198 - 46649226 GAAATTGGGTGTCCTGTT----------------CAGCAGAAATGCTGTATCCCATGAGTAAAAATA--AATTTGGAAAATACTTTCCTAC-TAGAAAACTGAATTCTGGTTCTTGGCAAATATATACCCACGGC--CTAGCGTTTACAAAGTCTCTGTGGAAAGCTGGGATTTTTAACCAAGACGGA----------ACTTTGGG--CCTTTG--GGCCTCCTC----------CTGCTAGT s canFam1.chrUn 1815517 198 + 91062872 GCAGCCGAGTATCCTTTT----------------AAGTAGAAATGCTATGTTCCACGAAT-AAAACA--AATTGG-AAGATATTTTTATACTTAGAAAAATGGATTATAGCTCTTGGCA---ACACACATGCTGC-------------GGTGTCTCTCTGGAAAACCATAA-TTTAAACTGAACCTGGTGCTTTTGGCA-TTGGTC--ACCTGGCTGTCCCCCTAGGGCG-----CAGCGGGT s galGal2.chr14 4270529 225 + 20603938 GCAGTTGATGGTGCTTTTTAAAGGAAAAAAAAAAAAAAAAAAAGGTGAGGTTGTAAGATT-AAAATAATAAACAG-GAAGCCTTTTTATATTTAGAAATATGGATTAGAGATTTTTGCT---GGACACATACTTTAGCAGGTGCTCTCCAGATCTTTAATGGAAACTATAA-TTTAAGCTCTGCCAG-----------ATTTTGGCATACGTTCCCATTTCCTTG-AGCAGAACCCTTCTGGT a score=14451.0 s hg17.chr7_random 752883 29 + 778964 CAGAGGGCAGCGTCCACCCTGCAGAAGTG s panTro1.chr6_random 67023350 29 + 67355074 CAGAGGGCAGCGTCCACCCTGCAGAAGTG s mm5.chr5 136463117 29 + 149219885 GGGAGAAGAGTATTCATCCTGGAAGGGTG s rn3.chr12 30535519 29 - 46649226 GAGAGAACTGTATTCCTCCTGGAAGGGTG s canFam1.chrUn 1815715 29 + 91062872 CAGAGGGCAGTGTCCACCCTGCAGAAGAG a score=11149.0 s hg17.chr7_random 752912 348 + 778964 -GGTGACGTCCA-------CCTCCAAGCTCTGCTGGCTTAAAGGGCCAGGGCCAGGTCCT---TGAGGGGACGGC-TTCCTGATGGGCCTCCGGCACTTGGCCAGCGCAGTTAAATACCCACGGCAAACGGCCGTCCCTTCCCGCCACGCAGAATAAAACCAGGGAAAACCGCTAGCCTCAG-AAACCCACTCGGACCCTGGGTAGCCGTAGTCCTG---CAGCCCCGAACCCAGGGT-ACATCCATCCCATTGCCCCAGGGAGGCGATTTACAGAAACCAGCAAACAACATGCAGCACCCAGGGTTCACACAGCAGCTGGATGGGGCTGCCTGGGGCTGCCATGCGGCCGTTCCCCCGGGTGCT s panTro1.chr6_random 67023379 348 + 67355074 -GGTGACGTCCA-------CCTCCAAGCTCTGCTGGCTTAAAGGGCCAGGGCCAGGTCCT---TGAGGGGACGGC-TTCCTGATGGGCCTCAGGCACTTGGCCAGCGCAGTTAAATACCCACGGCAAACGGCCATCCCTTCCCGCCACGCAGAATAAAACCAGGGAAAACCGCTAGCCTCAG-GAACCCACTCGGACCCTGGGTAGCCCTAGTCCTG---CAGCCCCGAACCCAGGGT-ACATCCATCCCATTGCCCCAGGGAGGCGATTTACAGAAACCAGCAAACAACATGCAGCACCCAGGGTTCACACAGCAGCTGGACGGGGCTGCCTGGGGCTGCCGTGCGGCCGTTCCCCCGGGCGCT s mm5.chr5 136463146 206 + 149219885 --------------------CTCCGGG--------------AAACCTAGCACACGGGCCTGTCTGGAGGGAGGG------------------------------GTGCAG----------------------------ATCCTGCCTGGGAAGGTAAAGCTGG-------TGCTATCCTGGGTGTCCCCACCCAGGTAAAGGGCAGATGGATTGTTG---CTGCCCTAGTGGCATCGTCACAGACCTGCC-TGGCCTGAGAGAGGGG--TTACAGG--------------ATGCAGCA--CGGGGGCCGTA------------GAAGCGTCCTGAGAAT-------------------------- s canFam1.chrUn 1815744 301 + 91062872 GGGCGGGGCTCAGGATGTCCACCCGAGCCCAGCCAG-GCAGAGGAGCAGGGGGGGGTCCC-----AGGGGACCCTGCCCCCCACAGGGCTCTGACATTCAGCAGGGCCCC-----CACCCAAATGAGACTGGCATCGCTGGCGTCTACA---------------------AGCCAGGCTCAGCAACCCCAACACGGCCCTGGAAGGCCACAGGgccaggtcagccaggtcagccaggt-TGCTCCCTGCG-----CCCTGGAAGGCAGTTTACAGAAATGAGCACAC---AAACAGCATGCCTGGGCCTCAGAGCATCT----GGGGTAATTTCACGCC-----GCGAGCA-------------- a score=165780.0 s hg17.chr7_random 753260 816 + 778964 GTAATAACAGTAATTATTATAATACATATGCCCATAACTCACCCGGGCTACCCAACATGCCACTTTTTCATTCCAGATTCCTTACTGAGCATCCTTTGATTCCCTTAAATGTGGCCTTCACCCACACGGGCCCTGCGGATTTACCCTGCATGCGAAGGGCCTCCCACATCACAGGAGGGCCCCTGCAGGCAGCTCCTgcgcccggccccgcccggccccgccgggcACTCCCTGACGCCCACCCCTGCCCTGGCTGGAAAATCT--GAAGTTGATGGAGGTGCTTGGTGTTCGTGCACAGC-CGCCTGGGACTCACG---GGACAGCCC----CATAAGTCACAGCCGGTT-----CCCGCAGGGGGCCCGGCCATCCC--ACGTGAGCCTGTAGCCAGGAAGTGGGCATCCACCCAC-GGGGCTCAGACATCCTGGCTCTGGAG-GGCCGGGTCCAGCAGAGGCCTTAAAGCTGCCTTTGTGCCTGACCCGGGGGGGCTggggaggggtagggacgggcag--------------------------------------------ggggaggcgcagggacgggcagggggatggggagggggaaggggagggATTTGCCAGGACAATATATTTGGGGAAC------------------TCCAGTTACACGAGGGTGACCTCACTCTTTCCTTTCTCAAAATTGCCTCCCAACGTCCCCGGGCCTGGCGAGAAGCCAGGCAGGACGC----------CACGACGCGTCGTGTCTGA------------GAGAAAACCGTCTCCCCTCCACTCAGGCTTCAGCCCCGACCCCACGCTAACTGGGCC--AGGGCAG-------------GGGCTGGG------CTGGGAGGG---GACCCAG-TGA---GCTCAGGGCTGGAGGAAAC-GGTCCCTGCTTTGAAGTGGC s panTro1.chr6_random 67023727 859 + 67355074 GAAATAACAGTAATTATTATAATACATATGCCCATAACTCACCCAGGCTACCCAACATGCCACTTTTTCA-TCCAGATTCCTTACTGAGCATCCTTTGATTCCCTTAAATGTGGCCTTCACCCACACGGGCCCTGCGGATTTACCCTGCATGCGAAGGGCCTCCCACATCACAGGAGGGCCCCTGCAGGCAGCTCCTgcgcccggccccgcccggccccgccgggcACTCCCTGACGCCCACCCCTGCCCTGGCTGGAAAATCT--GAAGTTGATGGAGGTGCTTGGTGTTCGTGCACAGC-CGCCTGGGACTCACG---GGACAGCCC----CATAAGTCACAGCCGGTT-----CCCGCAGGGGGCCTGGCCATCCC--ACGTGAGCCTGTAGCCAGGAAACGGGCATCCACCCACGGGGGCTCAGACATCCAGGCCCTGGAG-GGCCGGGTCCAGCAGAGGCCTTAAAGCTGCCTTTGTGCCTGACCC-GGGGGGCTggggaggggcagggacgggcagggggaggggcagggacaggcagggggaggggcaaggacgggcacggggaggcgcagggacgagcagggggatggggagggggaaggggagggATTTGCCAGGACAATATATTTGGGGAAC------------------TCCAGTTACACGAGGGTGACCTCACTCTTTCCTTTCTCAAAATTGCCTCCCAACGTCCCCGGGCCTGGCGAGAAGCCAGGCAGGACGC----------CACGACGCGTCGTGTCTGA------------GAGAAAACCGTCTCCCTTCCACTCAGGCTTCAGCCCCGACCCCACGCTAACCGGGCC--AGGGCAG-------------GGGCTGGG------CTGGGAGGG---GACCCAG-TGA---ACTCAGGGCTGGAGGAAAC-CATCCCTGCTTTGAAGTGGC s mm5.chr5 136463352 748 + 149219885 --CATCACAGTGATCAGAGTAATGAATGC-CCCATAACTCAGCTGGG---ACTGACATGCCGGCTCCTCGCTCCCAGCAGCTTACTGGGTACCCTTTGATTCCTTTACATGTGGCCTTCTTTCAT---GGCCCCGTGTGTTTACCCTGCAG---------CTCCCACATCACAG----------TCCACCTTCTTCTGTGCCCATCCCTG-----------TGGGTGCTCCCTGCCGCCCACCCCTGTCACCACTGGAAAGTCTGAGAGACTGATGGAGGTGCCGGGGACTTTTTCATAGTGCTATAGGGAGGCGAGGCCGGACGCACCCACTCATAGGTC-CAGTCTGCG--CCACCCACA----GCCTCTACATCCTAAACTCGAGGCTTTAGCCAGGAAGT-GGCATCCACCCAC-GATGCCCAGACATCCTGGTTTGGCCA-GCCAGCGTCCAGCAAGGGCCTCTAAGCCGCCTTTGAACTTGAACC-TCCCAGCTGGGGAGGG----------------------------------------------------------AGGGA-------------------------------------GGACAGATCTGTCGAGACAATATATTTGAGG-------------------------------TGAAGGTGAGCTCATTTTTTCC-TTCACAAAATTGCCTCCACATGTCCCCAGG-TTGGTGGGTGGCCAGCTAGAGCTCTGACCATCATTACAAGATACTGGGGCCAACT---AGAGGCTGGGGAAACC--------TCAAGCCAGGCTCCCACCCTGGCCCCTTATTGACTCATTG--GAGGCTGGAAGGTATCTGTCGGGGAGGG------TTGGAAGGGTCTTATTCAGATGA---GCTGTGACTTTGGGGACCCTCAGTCCTGCCTTGAAAAGGA s rn3.chr12 30535641 737 - 46649226 GTAAGCGCAGGGATTATAGTAATATAGGC-CCCATAACTCAGCCGAG---ACTGACACGCCGGCTTCTCC-CCCCAGCCCCCAGCTG------CTTT--CTGCTTTAAATG-GGCCTTCCTTCAG--GGCCCCCATGTGTTTACCCTGCAT---------CTCCCACATCACGG----------TCCAGATTCTTCTGTGCCCATCCCTG-----------TGGGTGCTCCCTGCCGCCCACCATTACC---ACTGGAAAGTCTGAGACGTGGATGGAGGTGTCAGGGACTTTTTCATCGTGCTGTAGGGAGGCGAGGCCGGACGTGCCCACTCGTGGGTC-CAGTCTTTGCACCACCCGAA----GCCTCTGCATCTTAAACTCGAGGCTTTAGCCAGGAAGC-GGCATCCACCCAC-GATGCCCAGACATCCTGGTTTGGCCA-GCCGGCATCCAGCAAGGGCCTCTAAGCCGCCTTTGAACCTGAACC-TCCCGACTGGGGAGGG----------------------------------------------------------AGGTG-------------------------------------GGCTAGATCTGTCGAGACAATATATTTGAGGAACCTTTTTTTTTTTTTTTTTTTTTTTTTTGTGAAGGTGAGCTCACTTTTTCC-TTTACAAAATTGCCTCCACATGTCCCCAGG-TTGGTGGGTGGCCAGCTAGTGCTCTGACCATCATTACAAGACAGTGAGGCCAACC---AGAGGCTGGGGAAACC--------TCAAGCCAGGCTCCCACCGTGGCCCCTTATTGTCTCATT-----------------------G----GAG------CTTAGAAGGTATGTGTCGG-GGA---GGCTTGCTCTGAAAAGGAT--------GGTATGAAGGTGT s canFam1.chrUn 1816045 635 + 91062872 GTAATAACAGTAATTATTATAACACATAC-CCCATAACTCACCCCGGCTGGCCAATGTGCCACTTTTTCATCCCAGATCCCTGACTGAGC-TCTTTTGATTCCCTCAAATGTGGCCGTCCCCCAC---ACTGCTGCG---CTGCCCGATGT---------GTCCCACATCACAGAAGGGC-----------TCCCCGCCGCCCTGCCCGG-------------------------------------------CTGGGAACCCG--------------AGCATCAGGCAT------------CGCT--------------GGGTAGCC-----CACAAGTCACTGCCTGTC-----CCTTCA--AGGGCTGGCGGGCCCAAATTTGAGACTACAGCC-GGACGCAAGCGTCCACCCAC-GGTGCCCGGACATCCTGGCTCGGGTGAGCCAAGGTCCAGCAAGCA-CTTAAAGCCGTCTTTGtacctgaatc-tctgaggccaagactg----------------------------------------------------------gg----------------------------------------ggctggacctgccaagacaacgtatttggagaac------------------tctggtta--tgaaaat----tcacctttCTCCATCCCCAAACTGCCTCTATGGGCCCCTGGC-CTCCAAAAAAGCCAGCTGTGACAC------CTGGCACATCATGAGGTCGCCAGCACAGAGAGGCTGGGAA-------------CTGCCCA----TCAGCCCCTACCCCATTCTGAGGGGGCCTGGGGGCCA-------------GCTCTGGGACCTCTCTTGGGGGG---TGGGCAG-AGGCCCCCTCAGGACGAGCAGGT----------------------- a score=6183.0 s hg17.chr7_random 754076 50 + 778964 TCCGGCACCGGCCTCTCCCACCACCCTGTCATGTATGA------AGGAGTTACAGA s panTro1.chr6_random 67025026 50 + 67355074 TCCGGCACCGGCCTCTCCCACCGCCCTGTCATGTATGA------AGGAGTTACAGA s mm5.chr5 136464120 49 + 149219885 TCCTGC-CGGTCCTATCCACCCCTCCCTCCACAGTCGA------GGAAGTCAAGGA s rn3.chr12 30536384 47 - 46649226 TCCTGC-CAGTCCTATCTACCC--CTCTCCACATTCAA------GGGGGTCACAGA s canFam1.chrUn 1816680 49 + 91062872 -TCAGC-CAGCCACTTCTTCCC----TGTCACATCCTACCTCTGAAGGGTGCTGG- a score=-1135.0 s hg17.chr7_random 754126 2 + 778964 CG- s panTro1.chr6_random 67025076 2 + 67355074 CG- s mm5.chr5 136464169 2 + 149219885 TA- s canFam1.chrUn 1816729 2 + 91062872 -GG a score=5942.0 s hg17.chr7_random 754128 61 + 778964 GCGGCGGGGGGAGGGGGGGTCTGTCCTGCTGGAAGGACGGAGGGAAGGGAGATGCCTCACT s panTro1.chr6_random 67025078 60 + 67355074 GCGGCGGGGGGAGGGGGG-TTTGTCCTGCTGGAAGGACGGAGGGAAGGGAGATGCCTCACT s canFam1.chrUn 1816731 39 + 91062872 GCAGCGGGGCAAGGAGAC-AGCCTCCCGTTGGA---------------------CCTGACT a score=3539.0 s hg17.chr7_random 754189 70 + 778964 ---------GAGTCCAG--AGGTCGAGGGGTGGGTG-GGGATTCTGCgaggatgaggaggaggaggagg--------aggTCCCGCCAAG s panTro1.chr6_random 67025138 67 + 67355074 ---------GAGTCCAG--AGGTCGAGGGGTGGGTG-GGGATTTTGCGAGGATGAGCAGGAGAAGGAGG-----------TCCTGCCAAG s mm5.chr5 136464219 79 + 149219885 ---------GATTCTGG--GGACAGTGAGGTAGAGGCTGGCTTCTGAAAAGAGATGGAATAGTACAGGCTTAAACACTGAGCACACTGTG s canFam1.chrUn 1816770 63 + 91062872 GCAACATTCCATTCCTGGTAGATGGAAGGGTGGGTG----------------TGAGGAGGGGGAACAGC-----------CTATGCTAAG a score=5048.0 s hg17.chr7_random 754259 67 + 778964 GTCAGCCGGGGCAGCAACACCTCCCGGCCCCTTTGCC------GAGGTCC-----------TGGCCCAGGTGGGGCTCCCGGGA s panTro1.chr6_random 67025205 67 + 67355074 GTCGGCCGGGGCAGCAACACCTCCCGGCCCCTTTGCC------GAGGTCC-----------TGGCCCAGGTGGGGCTCCCAGGA s mm5.chr5 136464298 79 + 149219885 GCCATCCAGGGCAGTGA---CTCCCTGCTCCTTAGCCATTCCTGGGGTCTTCCACAGCAAGTGGCTCAG--GGGCCTCCAGGGA s rn3.chr12 30536562 69 - 46649226 GACATCCAGGGAAGTGA---CTCCATGCTCCTTAGTCATACCTGGGGTC------------TTCCACAGCAAGTGGTTCAGGGG s canFam1.chrUn 1816833 20 + 91062872 ---ATGCTGAGCAGCA---------------------------GAGGTCA---------------------------------- a score=1268.0 s hg17.chr7_random 754326 105 + 778964 GCCTGGAGGCCAACGGCGGA------AAGACAGGGACCTGATCCCTCCAGCAGTCCCAGCCGCCGGCCCCTCACACCCTCACCTCTCCCAGGAAGTCCTCAGCATGCTGCC---- s panTro1.chr6_random 67025272 105 + 67355074 GCCTGGAGGCCAACGGCGGA------AAGACAGGGACCTGATCCCTCCAGCAGTCCCAGCCGCCGGCCCCTCACACCCTCACCTCTCCCAGGAAGTCCTCAGCATGCTGCC---- s rn3.chr12 30536631 64 - 46649226 CCTCCAGGGACAACCACAGACTTAGCAAGCCAGGGACACAA--------------------GATGGCCAC----------------------ATGCCCTCAG-ATAC-------- s canFam1.chrUn 1816853 56 + 91062872 GCCCAGAGTTACTTAGGGGA----------------------CCCTCCTTCA------------GGCCCC------------------------ACCCTCAA-GTGCCTCCTGCC a score=0.0 s hg17.chr7_random 754431 26 + 778964 GGCTGGGGCCTGGCGCTGGGGCAGGA a score=1778.0 s hg17.chr7_random 754431 14 + 778964 GGCTGGGGCCTGGC s panTro1.chr6_random 67025377 14 + 67355074 GGCTGGGGCCTGGC s rn3.chr12 30536695 12 - 46649226 -ACTGGAG-CTAAC a score=-128.0 s hg17.chr7_random 754445 1 + 778964 G s panTro1.chr6_random 67025391 1 + 67355074 G s mm5.chr5 136464446 1 + 149219885 T a score=0.0 s hg17.chr7_random 754445 1 + 778964 G a score=3206.0 s hg17.chr7_random 754446 11 + 778964 CTGGGGCAGGA s panTro1.chr6_random 67025392 11 + 67355074 CTGGGGCAGGA s mm5.chr5 136464447 10 + 149219885 CTGAGG-AGGG s rn3.chr12 30536707 10 - 46649226 CTGAGG-AGGG a score=2070.0 s hg17.chr7_random 754457 60 + 778964 GGGTGGCCACCCGCGCTGAAGATGAGGACAAG---CCCGGGGCGTG-GGTGGTGGGCGTTTCCT s panTro1.chr6_random 67025403 60 + 67355074 GGGTGGCCACCCGCGCTGAGGATGAGGACAAG---CCCGGGGCGTG-GGTGGTGGGCGTTTCCT s mm5.chr5 136464457 45 + 149219885 AGGTGGCTA------CTGCAATTGTGG-----------TGGGTGTG-GGTGTGGTGGGCTTCC- s rn3.chr12 30536717 63 - 46649226 AGGTACCTACTGCAATTGGGGTAGACGATGGGTGACGATGGGTGTG-GGTATGGAGGGCTTCCT s canFam1.chrUn 1816909 25 + 91062872 ---------------------------------------AGGTGTTCAGTGGTGGGCCCCCTCC a score=5576.0 s hg17.chr7_random 754517 127 + 778964 CTG---TGGGGTGGACGAGGCTCTTGCGGTGCGTGTGTTGGGGACATGAGACGGGGCGGGG--------------------CAGCTGCCAGGCGGCCAATGGCTTCCACACCAGGGGCCAAGAGCA--GAACCCC----------AGGAG--GGTTATCTCAGT s panTro1.chr6_random 67025463 127 + 67355074 CTG---TGGGGTGGACGAGGCTCTTGCGGTGCGTGTGTTGGGGACAGGAGACGGGGCGGGG--------------------CAGCTGCCAGGCAGCCAATGGCTTCCACACCAGGTGCCAAGAGCA--GAACCCC----------AGAAG--GGTTATCTCAGT s mm5.chr5 136464502 106 + 149219885 -------------------------------------TTGGGGATGAAAGGCTGCCTAGAA--------------------CAGGCAGGAGGTGGGGTCTGCCTAGTACACAAGGGGAAGAGGGCAC-GAAGCCTGCTCTGTGAGAGAAGCCCGTGATGTAACC s canFam1.chrUn 1816934 145 + 91062872 CTGCATCAGAGTGG--GGGGTCTCTGTGGTATGTGTGTGGGGAGGAGGAGGCAGGGTGGCGTCTGCCTAGGGCCATGGTCACGGCGGCCAGG-AGAGAATGGATT----AATGGGGGAGAGGGGGACTGCATCCA----------GAGAG--CCTCCACCCAAC a score=26076.0 s hg17.chr7_random 754644 362 + 778964 CTTCCCGGCAGCAGTGAGCTC--TGTTCGTTTTTCTGAGTAATATGGAAATG---GCACGGCTCAGCCACACAAGGGCCT--GGGCAAAGGTCACGGCCAGCAAAGAACACAGCCTGGGTCCTCT--GAGTCCCGAGTCCACGCGATCCTGACCCGTCCACCACCCTCCTCGAGAC-------ACGACAAGTTAGGCGGGAACATAACCTGGGAGCCCCATGTCGG--TTTCAGGCTCCACAAGG------GATCTCTGGGTAAAGGGTTTG-----TCTCTTCCACATCTGTTCATTTAGGAGAAG----CAAAGAACATGGAAAGCAGAAT-TCCTGGGGGTGGCCTCAACCCC-----------AAGCCCTGCCGATGCAAACCGGCACC-----TTGAAGATGCCTTT s panTro1.chr6_random 67025590 358 + 67355074 CTTCCCGGCAGCAGTGAGCTC--TGTTGGTTTTTCT----AACATGGAAATG---GCACGGCTCAGCCACACAAGGGCCT--GGGCAAAGGTCACGGCCAGCAAAGAACACAGCCTGGGTCCTCT--GAGTCCCGAGTCCACGCGATCCTGACCCATCCACCACCCTCCTCGAGAC-------ACGACAAGTTAGGCGGGAACATAACCTGGGAGCCCCATGTTGG--TTTCAGGCTCCACAAGG------GATCTCCGGGTAAAGGGTCTG-----TCTCTTCCACATCTGTTCATTTAGGAGAAG----CAAAGAACGTGGAAAGCAGAAT-TCCTGGGGGTGGCCTCAACCCC-----------AAGCCCTGCCGATGCAAACCGGCACC-----TTGAAGATGGCTTT s mm5.chr5 136464608 308 + 149219885 CT--CTGGCCGCTGTGGAC-C--CGCTCACCCCTCT----GGGATGAAA------------CCCAGGGTGGAAAGGACC-------------------------AGAGCAGAGCC----TCCTTG--CAGTC-----TGCACAAGGTTCTGACTCACTCACAGCCTTCCTGGAGATGTACATGGCGGCGGGGGTGGGGTGGGCATGGAAGGGGGAACTCAGG-----------GACTCCATAA-------------CCTTGAAGACAGCCTGCAGCACTTTTCCTATATCCACTTATTTGGGGAAAG---TCAAAGAATATGTGACCCAGAAT-CCCCTGGGGTCACCCCAACTCT-------------GTCTTTGAGATG-GAATTAAAAGA-----TTCTAGGTGACTTT s rn3.chr12 30536868 292 - 46649226 CCCTCTGGCCGCTGTGTACTCCATGCTCACTCCTCT----GGGACAAAG------------CCCACCACAGCTAAGGCA-----------GCCCAGGGTGGAAAGGACCAGAGAGAGCCTCCTTGCACAGTC-----TGCACAAGGTTCTGATTCACCTACAGCCTTCCCGGACAT-----------------------------------------TCAGG-----------GACTCCATAA-------------CCTTGAGGACAGCCAG---CACTTTTCTTATGTCCACTTATTTGGGGACGTCCGTCAAAGAATGTGTGACCCACAATCCCCCTGGGGTCTCCCCAACCTT-------------GTTATG-AGATG-GAACTGAAAGA-----TTCTAGGTGACTTT s canFam1.chrUn 1817079 363 + 91062872 -------CCCACAGTGGGCTC--TTCAAGGCCATGT--------CAGAACTGCCCGCTTGGATCTGTGGCTCCGAGTCCTTCAAGTAAATGGACATGGTGGTCAGTGACAAGGCCTGAGCTCTGA--CACCC-CAACGCTGAGGGGCCCTGGACTGTCTGCCATCTTCCC--ACAT------------GGGTCAGGGAGGAATATCTCACGAGACCCCGATGGAGGCCCTCCAGGATCCAGAGAGAGCAAAGAACTCTGGGGGAAGGTTTAC-----CACGTCCCATACCTGCTCACCCAGCAGAAC----CACAG---GTGTG-CCCAGAAT-TCCCCGGGGTCCTCTCAGCTCTCATTTCTGCCCAAACCCTAATGATA-CAACTGACTCATTCCTTTGAAGATGTCTCT a score=3000.0 s hg17.chr7_random 755006 4 + 778964 GGAA s panTro1.chr6_random 67025948 4 + 67355074 GGAA s mm5.chr5 136465153 4 + 149219885 GGAA s rn3.chr12 30537160 4 - 46649226 GGCA s canFam1.chrUn 1817442 4 + 91062872 GGAA a score=1211.0 s hg17.chr7_random 755010 26 + 778964 TTTAACTGGAAGATTTGAATGA--------CATG s panTro1.chr6_random 67025952 26 + 67355074 TTTAACTGGAAGATTTGAATGA--------CATG s mm5.chr5 136465157 34 + 149219885 ACAAAAGGGAAAAAATGGAGGAGGAAGAATAAGG s canFam1.chrUn 1817446 29 + 91062872 TTGAATTAGAAGACTC--ATGA---ACTTCCATG a score=0.0 s hg17.chr7_random 755036 4 + 778964 GGCA a score=300.0 s hg17.chr7_random 755036 1 + 778964 G s panTro1.chr6_random 67025978 1 + 67355074 G s mm5.chr5 136465191 1 + 149219885 G a score=74.0 s hg17.chr7_random 755037 3 + 778964 GCA s panTro1.chr6_random 67025979 3 + 67355074 GCA s mm5.chr5 136465192 3 + 149219885 ATA s rn3.chr12 30537397 3 - 46649226 GAG a score=50774.0 s hg17.chr7_random 755040 198 + 778964 GACACAGAAGAGGGAGAAGCA----------------------------TTCCACAGGGGAGGAAAGGCCTCAGTGGGGACCTATG-GAGCTCCCAGGC--------CCACCGCAGGGAGG----CAGGTCCTCGGT-CATCTGCG------GAGGTCAGTATCTATCAAAGCCCAGCCGCAGAT-AGATGAGCTGGGC-CTGGCGGGGTCTTGTAGGATGTGTAGGAGTTTGTGAGGCAGAGCAGGA s panTro1.chr6_random 67025982 198 + 67355074 GACACAGAAGAGGGAGAGGCA----------------------------TTCCACGGGGGAGGAAAGGCCTCAGTGGGGACCTATG-GGGCTCCCAGGC--------CCACCGCAGGGAGG----CAGGTCCTCGGT-CATCTGCC------GAGGTCAGTATCTATCAAAGCCCAGCCGCGGAT-AGATGAGCTGGGC-CTGGCGGGGTCTTGTGGGATATGTAGGAGTTCGTGAGGCAGAACAGGA s mm5.chr5 136465195 213 + 149219885 GAGGAGAAAGAGGGAGGGGGA---------------GGGCAGACTCATGTTCCA-AGGAAAGGATGGGCCCAGATCAGAAGCCACATGAGCTCCCAGG---------TTACGGCAGTGGGAGTGTCTAGTCTTCTGT-TGTC-ACT------AAGGTCAGCATTTATCAACACTCCACTGCAGACAAGAGGAGCAGGGC-CTGG-AGGGTATTGAAGGATGAATAAGAGTTTGCAAGGCAGAGGAGCA s rn3.chr12 30537400 232 - 46649226 GAGGAAGAAGAGGAAGAGGAGAAGGAGGGAAGGAGAGGGCAGCCTCATGTTCCA-AAGAAAGGATGGGCCTAGATCCGAAGCCACACAGGCTCCAAAGCCACACAGGCTCCCAGGGGGTGG----GGGGTCTTCTGC-TGTC-ACT------AAGGTCAGCATTTATCAGTGCTCCACTGCAGAC-AGAGGAACAGGGC-CTGG-AGGGTATTGAAGAATGAATAAGAGTTTGGAAGGCAGAGCAAAA s canFam1.chrUn 1817475 175 + 91062872 AACACACAAGGGGGGAGAACA----------------------------TTCC--GGGGTAGGAAGCGTC-------GGAGCCACA---------------------------CGGTGGTG----AAGGTCATCAGCGCAGCAGCCCAAGAGAGGAGCGGGATGTG-----GCTCTGCCTGGACTGGGAGGAGCCAGGCTCCAGCGGGGTCTTGAAGGATGCGTAGGAGTTTGCAAGGAAGGGCAGAA a score=-380.0 s hg17.chr7_random 755238 4 + 778964 A---TGA s panTro1.chr6_random 67026180 4 + 67355074 A---TGA s mm5.chr5 136465408 7 + 149219885 AAGCTAC s canFam1.chrUn 1817650 4 + 91062872 A---TAA a score=17076.0 s hg17.chr7_random 755242 222 + 778964 AAGCA-GAGGGGACAGGAGGGG--CAGAACCAGAGTCAGGACATTCATTGGCTAATTTCCTGTTCTTGGTC---CCTCTCCCCCATTAAGCCACAACCTCCCCCACACCAGAGCAGGCACCAGGTCCTCCTCGTCACAagtgc------------caggcat------aaagcag---gcact--caataaacatC-------------CAGGAAGGAG-------ACGGCAGGGGAGGAGGCGACATGATGACTCCAGGACCCAGAGTGG s panTro1.chr6_random 67026184 222 + 67355074 AAGCA-GAGGGGACAGGAGGGG--CAGAACCAGAGTCAGGACATTCATTGGCTAATTTCCTGTTCTTGCTC---CCTCTCCCCCATTAAGCCACAACCTCCCCCACACCAGAGCAGGCACCAGGTCCTCCTCATCACAAGTGC------------CAGGCAT------AAAGCAG---GCACT--CAATAAACATC-------------CAGGAAGGAG-------ACGGCAGGGGAGGAGGCGACATGATGACTCCAGGACCCAGAGTGG s mm5.chr5 136465415 231 + 149219885 GAGCA-GAGAATTCCGGGGAAGCCCAGCCCTGAGGTGTAAGCTGCTGGTCACTAATTTCCTGTTGATCGCCCATCATCCACCCCATGAAGTGACCACAGCACCC---CCAGGGCAGAT-CCGTGT--------TGACTATTCC------------CAGGGGTCCAATGGGAGCTG---GCAATGCCACTGGAGATCAAGAGTTAGCAGGCTGGAAGGAG-------AAGACAGAGCAATGAGC-----GGTGGGTTTAGGGCCAGGAATGG s canFam1.chrUn 1817862 197 + 91062872 AAGCACGGAGGGACAAGAGGAATCGAGACCCACAGGCCAGACACTCATTGGCC-ATGTCCTG-------------------------------CAAACTTACAGGCCGGAGGACAGAGGCCATGT-------GCCCCAAGTGTATGTTCTGCGCACAGGGAG------AGTGCAGTAAACATG--CATTAAACATG-------------AGAGCAAGAATTCAAGCAAGGCAGAGAGGGAAGA-----GGGGCCTCTAGGGG--------- a score=9782.0 s hg17.chr7_random 755464 81 + 778964 AGGTGATGGGGGAGGAG-GTGACA-CCAGGACCCAGAGTGGAGAGGGCAGGGGAGGAGGTGACAC---------------------------------------GGTGACACCAGGACCCAg s panTro1.chr6_random 67026406 120 + 67355074 AGGGGATGGGGGAGGAG-GTGACA-CCAGGACCCAGAGTGGAGAGGGCAGGGGAGGAGGTGACACAGTGACACCAGGACCCAgagtggaggggatgggggaggaggtgacaccaggacccag s mm5.chr12 107739842 73 + 115071072 AGGAAGTAAGGGAGGAG-ATGACA-GCAGGAACCACTTCCTAGGAAGTAAGGGAGGA-----------------------------------------------GATGACAGCAGGAACCAC s canFam1.chrUn 1818059 84 + 91062872 GAGTGATGGACAATGAGAATGACGTGGAGGAGCCAGGCAGGATGAGGACCGGGGGGA-CAGACATGG-------------------------------------GTCTGAACCAGGAACCAG a score=17326.0 s hg17.chr7_random 755545 112 + 778964 agtggaggggatgggggaggaggtgacaccaggatccagagtggagagggtgggggaggaggtgacaccaggacccagagtggaggggatgggggaggaggtgacaccagga s panTro1.chr6_random 67026526 112 + 67355074 agtggaggggatgggggaggaggtgacaccaggacccagagtggagagggtgggggaggaggtgacaccaggacccacagtggaggggatgggggaggaggtgacaccagga s mm5.chr12 107739915 107 + 115071072 TTCCTAGGAAGTAAGGGAGGAGATGACAGCAGGAACCACTTCCTAGGAAGT----GAGGAGATGACAGCAGGAACCACGTCCTAGGAG-TGAGGGAGGAGATGACAGCAGGA a score=3590.0 s hg17.chr7_random 755657 41 + 778964 cccagagtggagagggcgggggaggaggtgaCATGGTGACA s panTro1.chr6_random 67026638 41 + 67355074 cccagagtggaggggatgggggaggaggtgaCATGGTGACA a score=16328.0 s hg17.chr7_random 755698 186 + 778964 CCAGGACCCAGAATGGACAGGGCGGGGGAGGAGGTGACACGGTGACACCAGGACCCAGAGTGTGAACTAGAAGAGGGGCTATAAGTAGTAGCATGAGATTTGGGGCTGGGATAAAGCGGTGGGTCCAGTCAGGAAGCTGCCCATCCCATACCTCCCGCAGAGGTGGCTCTGCCTTCAGCACTGCTG s panTro1.chr6_random 67026804 183 + 67355074 CCAGGACCCAGAGTGGAGAGGGCGGGGGAGGAGGTGACACGGTGACACCAGGACCCAGAGTGTGAACTGGAAGAGGGGCTATAAGTAG---CATGAGATTTGGGGCTGGGATAAAGCGGTGGGTCCAGTCAGGAACCTGCCCATCCCATACCTCCCGCAGAGGTGGCTCTGCCCTCAGCACTGCTG a score=15095.0 s hg17.chr7_random 755884 168 + 778964 ACCACTGGGCAGGCCTGGGCTGCCAGGGTCTCTCTGGGATCAGCCCTGCCCCATCTGCTGGGGGCTGAGCCCCATTCCCTGCAGCCCCCCATCAGGCCCTGGTGTCTGGATACCAGGCACAACGGGGCCACCTCCTGGGACGGGCCCAGGCCCCAAGACGATGCCCGG s panTro1.chr6_random 67026987 160 + 67355074 ACCACTGGGCAGGCCTGGGCTGCCAGGGTCTCTCTGGGATCAGCCCTGCCCCATCTGCTGGGGGCTGAGCCCCATTCCCTGCAGCCCCCCATCAGGCCCTGGTGTCTGGATACCAGG--------GGCCACCTCCTGGGACGGGCCCAGGCCCCAAGACGATGCCCGG s rn3.chr12 30538479 109 - 46649226 AACTTTGAACAGAGACAGGGTTCTTGGGACCCACTTAGACGAG-----------CTGCTAGGGGCCAAGGCCTCCTCC-----GCTCCCTACCAA----------------ACCTGG----------------CCTGGGGTAGG-CCAGGAACCAAGC---------- a score=5639.0 s hg17.chr7_random 756052 34 + 778964 CTGGGATGCTGGCCGCATCCTCCTCTGTCTTCTC s panTro1.chr6_random 67027147 34 + 67355074 CTGGGATGCTGGCCGCATCCTCCTCTGTCTTCTC s canFam1.chrUn 1818363 33 + 91062872 CCGGGGCGCTGGCTGCATGCTTGCCTGTCTCTC- a score=106841.0 s hg17.chr7_random 756086 1043 + 778964 TATTTCCTGGGCTAGGCTTTT------------TTTAAACTCGAAGCAAAGCCAGCAGGAGATGACTCTGCGGCCTGGCAGCTGAGCCCAGGGTTGACCCGCCAGTGCCGCCCTCCAGCCTTCCCCCTCCACACTTCCTCTGAGGCCGGGCAGTACCCGGGACCTTTGGCACCTGCCTCAGTTTCCATCTCTAG-GGGAGACAGGAG-CACCCCCAC-----TCCCTGACACAAAGGTCTGCCCCAGAGGCCCTGTCTAGGGGCCCAGCCCGTGGGTTCCGGCTCAGGACAGAGCACACCAGGGAGAAGAGAAACTGGCTCTTTCTCCGCCTGCGCGGGCCAGGCCCGAGG------CACGTGCCCCCCACGGGGAGGCGGGACCCCTGAG----TCATTTCCTGTGCTATCAGCTCC--GGAAGCAG---AGTGGGCCTGCTCAGGTTCCCAGAAACACAGCGCGATGGGGGACAGACTCCGCGGCTGCCACGGAAACAAATGAGTAAATGCCCTCCCCAG-AATAGCGTGGCCGGGACAGAGGCACAGCCACCGGAGGCCAGACCTCGAAATAGCTC-------------GTGCTGGGCAGCCGGGGGTGGCGTTGCCTGCACGG--AAGAGTGCGGAGGCCACCTCCTGGggcaggtggacaaggaga-agggc----aggcggacaaggagaagggcaggc-aggc--aTCCC-AGACCCAGAGAAGACTC---AGCCAGCCTGGGAAGCAGTGACCGTCTCGGGTAGCAGA-ATCCCCAAAGCGTCCTGCA------CTGTGGGGG-CTTCCAGTCTGTGTGCAGAAAGGCCGTAAAGAGAC------GGTCTCATGAGATG--TCATCACCACGAGCCGCAGAGGGTC---CTACGAGGG--AGGCGTGGGACATGTCTGCTGATGC---CCACTGggaagtgacatttagcagagagcagaa-ggagaagc--aggagctaacggggttcccggcagagc-----aggggacacacacca---------------aggccctggggccgccagt--gcagg-cggattccaggaaccgagggaggat-----gatgtcactgaggTC-----CTTCCCGCTGACTCCG---------------------CAGGGGCTCGGGCCTGATTCAAAGGGAAAC s panTro1.chr6_random 67027181 1042 + 67355074 TACTTCCTGGGCTAGGCTTTT------------TTTAAACTCGAAGCAAAGCCAGCAGGAGATGACTCTGCGGCCTGGCAGCTGAGCCCAGGGTTGACCCGCCAGTGCCGCCCTCCAGCCTTCCCCC-CCACACTTCCTCTGAGGCCGGGCAGTACCCGGGACCTTTGGCACCTGCCTCAGTTTCCATCTCTAG-GGGAGACAGGAG-CACCCCCAC-----TCCCTGACACAAAGGTCTGCCCCAGAGGCCCTGTCTAGGGGCCCAGCCCGTGGGTTCCGGCTCAGGACAGAGCACACCAGGGAGAAGAGAAACCGGCTCTTTCTCCGCCTGCACGGGCCAGGCCCGAGG------CACGTGCCCCTCGCGGGGAGGCGGGACCCCTGAG----TCATTTCCTGTGCTATCAGCTCC--GGAAGCAG---AGTGGGCCTGCTCAGGTTCCCAGAAACACAGCGCGATGGGGGACAGACTCCGCGGCTGCCACGGAAACAAATGAGTAAATGCCCTCCCCAG-AATAGCGTGGCCGGGACAGAGGCACAGCCACCGGAGGCCAGACCTCGAAATAGCTC-------------GTGCTGGGCAGCCGGGGGTGGCGTTGCCTGCACGG--AAGAGTGCGGAGGCCACCTCCTGGggcaggtggacaaggaga-agggc----aggcggacaaggagaagggcaggc-aggc--aTCCC-AGACCCAGAGAAGACTC---AGCCAGCCTGGGAAGCAGTGACTGTCTCGGGTAGCAGA-ACCCCCAAAGCGTCCTGCA------CTGTGGGGG-CTTCCAGTCTGTGTGCAGAAAAGCCGTAAAGAGAC------GGTCTCATGAGATG--TCATCACCACGAGCCGCAGAGGGTC---CTACAAGGG--AGGCGTGGGACATGTCTGCTGATGC---CCACTGGGAAGTGACATTTAGCAGAGAGCAGAA-GGAGAAGC--AGGAGCTAACGGGGTTCCCGGCAGAGC-----GGGGGACACACACCA---------------AGGCCCTGAGGCCGCCAGT--GCAGG-CGGATTCCAGGAACCGAGGGAGGAT-----GGTGTCACTGAGGTC-----CTTCCCGCTGACTCCG---------------------TAGGGGCTCGGGCCTGATTCAAAGGGAAAC s mm5.chr5 136466261 987 + 149219885 TGTTTTCTGAGCTGGGTTCTTCATGGATGTTTGTTTTAACCTGAAGCTAGGGCA------------------------CAGCAGAGCCTA--ACTAA--CATCAGAACCTCTTTTTAATCGTCTGCC-TCATGCTTCCTCTTGAG-TGAGTAGCCCAAGGGATCACGACCTCCCAACTCAGTTTCCTTGTTT-G-GGGAGACAGGAG---------------GCCCTG----------CCTCCCCTGAGACCCAGACCAGGGGTTGAGCTGTCAGATTCACG------------------------------------------------------GGGTCAGCTTT---G------CGTGTGCCCCAC--------TCGGGACGCCTGAGTGACTCACTTCCTATG-TGGTGTCTCC--GGAAGCAG----GTGGGCCAGTGC-GGTTCCCAGAAA-----TGCATTGTGGGACAAAGTT--GGGCTGCTGGGG----AAATCAGAAAAGGATTTTCCCAGAAATAGCCTGGCT-GGACATAGACTTAG-GAGCAGAGGCCAGGCC-CAAAATAGCTCACCTAACCCCAGGGCACCAGGCAGGGTGTGGTCGAGACACCTCCGAGGCAAGGAGGGCACAGCAAGTCCCCTCGGACAGGTGGAGCATAAG-----------CTATGGCTAATTAGAAGGTGAGGCTAAGCTGAGCCA-CAGCCCAGCAATGACCCTGGGGCTGGCCTAGGA-------ACTGACCCACAACGCTGAGGACCCTGAAATGTCCTGGG------CAGACTCTG-TCCCTGCCCTCTGT--------TCCATCTAGAGAC-----AGAATTCAAGAAATGGATCACAGAAAGTAGCCCCAAATAAGCAATTGATCAGGGCAGGGCATGTGGCACACCTGCTGATAC-CACCCCGAAGAGCTGACATAGATTACAACACTAAA-GGAGAAGC--AGATACT--CAGAGTGACAGCAAGAGCAAGTGAGGGGACACCCATCAGGACGATACCAGCCCAGGCCCAGGGGCAGTCCATCAGTAGGTCAGACTCCCGCAGGCAAGAGGAGGTCCCAGACTGACTCAGAGATCAGTGTCATCACACTGCTTGGGAGGAGGATGTAAGAAAGTAACCATGGGCTC---CCTATGTCAGAAGG-GAC s rn3.chr12 30538588 910 - 46649226 TGCTTTCTGAGCTGGGTTTTTCATGGATGTTTGTTTTATTT-------GACCTAGCACATGGTCA-------------CAGCAGAGCCTA--ACTAA--CATCAGAAGCACTTTTTAATCATCTGCC-TCACACTTCCTCTGAG--TGAGTAGCCCAAGGGATCACTACCTCCCAACTCAGTTTCCTTGTTT-G-GGGAGATAGGAT---------------GCCCTC----------CCTCCCCTGAGACCCAGACCAGGGGTTGAGCTGTCAGATTC------------------ACCA------------------------------------GGTCAACTTT---G------CGTGTGCCCCAC--------TCGGGACGCCGGGGTGACTCATTTCCTATG-TGGTGGCTCC--GGAAGCAG----GTGGGCCAGTGT-GGTTCCCAGAAA-----TGCATTGTGGGACAAAGTT--GGGCTGCTGGGG----AAATCAGAAAAGGATTTTCCCAGAAATAGC-CGGCT-GGACATAGGCTCAG-GAGCAGAGGCCAGGCC-CAAAATAGCTCGCCTAACCCCGGGGCACCAGGCAGGGTGTGGCCTGGACACCTCAGAGGTGAGGAGGGCACAGCAAGTCCCCCGGGGCAGGTGGGGCACAAACTATGGCTAATTAGAAGCTGAGGCTAAGCTGAGGCTAAGCTGAGCCA-CAGCCCAGCAACAACCCTGGGGCTGGCTTAGGA-------ATTGACCCGCAATGCTAAGGGCCCTGAAATGTTCTGGGGCTACTCTGTCCATGTCCTCTGTTCTGTCTGGGGACAGACCTTAAAGAAAT------GGATGACAGAAATAGCTC-------------CCAAATAAGC--------AGGGCAAGGCATGTGGTACACCTGCTGACACCCACCCTGAAGAGCTAACACAGAGTATGACACTAAAGGGAGAAACAGAGGAAGTGATGGGACACCCATCAGGAC---------GATACCAGCCC---------------AGTCCCAGTGGCAGCCCAACAGCAGGTCAGACTCCCAGAGGCAAGAGGAGGC------------------CC------------------------------------------CAG---------ACTGATTCAGAGAGAGAC s canFam1.chrUn 1818396 663 + 91062872 TATCTCCC--ACTA----TTT------------GCTTAACCCACAGCAAAAGTAACAGGTGCTGA----------------CTGTGACTG--------------------------------------------------------TGGGCAGCCCA--GGGCCCTGGGCTCCTGCCTCAGTTTCCTTCTTTGGCGGCAGACAAAGCTCCCCCTCACTGCCAACCCTC----------CCACCCTTGAGGCTTGGGCCAGGCCCTGAGCT--------------CAGGACAGAGCAGCTCG-----------------------------------GGGTC---CCCGAGGTGACTCCATGTGCCCCTCACCGTAAGACCTGGGCTGTGAG----TCACTTCCAGTGCTGCCAGCTCCCAGGAGACAGTGACACGGGCCAACACAGAT-----------------------------------GGGCTGCCAGGGAGACA-----------------------AATCGTTTGG-----------------------------------------------------------GAGCCA-------------------------------GAGGGTGTGGTGCCCACCTC-----ACAGTCAGGGAGTATA-----------GTGCAGGGGAGGCGTGAGGGCGCC-CAGC--ACCCCGAGGCCCAG------------AGGTGGCCTGTGT-----------------------AA-AACCACAAACTGAGTTGAG------TCATAGGAA------------------------------GGAGACTGCTGAGGCCACAGCGGAAA--CCAT-------AGGGCCAGATGCCC---ATGCGAAGG--AGG-------GACATCTGCCGGAGG---CCAATGGA----GACACG----------------GGGGCAGG--AGGGGGCAACAGGGGTCCCAACAGAGG---------------CAGCA---------------AGGT-----------------GCCAA-CGGATCCCAGGAAGTGAGAGGACAC-----CATGG-GCTCGGGCC-----CGTCCTGTGGTCGCAC---------------------AAAGGTCCTGGGTCTGATTCAGAGAGAAGC a score=4912.0 s hg17.chr7_random 757129 107 + 778964 AAACTCCTAGCGGGCGTTTTCCCAGAGGCTGCACCATCAGCTCCG-CACCAGCAAGGTCAGGCTGCCGTGCGG-GGGGCGGCCTGCAGAACAGGAGCCCAGCGGGGGAT s panTro1.chr6_random 67028223 108 + 67355074 AAACTCCTCGCGGGTGTTTTCCCAGAGGCTGCGCCATCAGCTCCG-CACCAGCAAGGTCAGGCCGCCGTGCGGAGGGGCGGCCTGCGGAACAGGAGCCCAGCGGGGGAC s mm5.chr5 136467248 73 + 149219885 AAAGACATAGAGG--ATTTGGATAGAAAACAGACCCCGAGCTCAG--GGAAACATGTTCTGAC-------------------------AACAGGAGCC-------AGAC s canFam1.chrUn 1819059 91 + 91062872 ---CCATTTGAGG--GCTTTCCTTGAGACTGGTGCACATGGGGTGCCGTCTGCAAGGCC------CCGTGTGG-ACGGCAGCCTGCAGGA------CCCAGAGAGGGAT a score=61959.0 s hg17.chr7_random 757236 698 + 778964 GAGGGGGCCTCAAAGCCTTCAC-ACCAGAGCACCCAGGCTCTAAACCGGACGGCAGAAGAGATGGGAGCCAGAGGCTCTGGGCAAGACTGGGCTGCGGGGCCAGGGGTGATGTCATGTGCCGTGTGTATGTGTTTATTTACTTAGTTTTATACATATATGTATCTATTTTATACATACACATACACATGGCCTGGCCATCGGGCACGAGACGGGGTCTCCAGCGGAGGGGAAGCTTCTCCTTCCAAAACAGTGGGAGCATCTCA---TAAAAGATGCTCTTGAGACAAGCGTGGGAAGATGACACAGTGAGACCCGACTCACGGCTGGGACGTTCC--------AAGCTGGGAGCCAAACGCAGGCGCAAAAGGCAGCCGTTGTTTGATCGTGAAGTCGTCGGT-CCTAGGGGGTCTCTAAGCACGTCGCTCTCCCACCCACTTTGAGAT-GTTAACATCCCATGTGGTGGGTGAGCCTGGTGTATTCATCGGCCTCGGATCTGGAGACGGCGCTGG-------GTCAAACAGAACCGCCCTGGCCAGC-CCCA-GCAGTCGCAGCCCGGGGGCAAGCGGAAGACAGCGGCCCTGGAAAACCTGAGGCCGCTGCCGGCACCTGCCAG-CATCACCCTTGTTTCCCTCTGCACTTTCTCATATTCCCATATTCTCTTCCAAGAGATAGCAGTTGCATT-----TCTGGATTAAAACACTAGGAATACG s panTro1.chr6_random 67028331 697 + 67355074 GGGGGGGCCTCAAAGCCTTCAC-ACCAGAGCACCCAGGCTCTAAACCGGACGGCAGAAGAGATGGGAACCAGAGGCTCTGGGCAAGACTGGGCTGCGGGGCCAGGGGTGATGTCATGTGCCGTGCGTATGTGTTTATTTACTTAGTTTTATACATATATGTATCTATTTTACACATACACATACACATGGCCTGGCCATGGGGCACGAGACGGGGTCTCCAGCGGAGGGGAAGCTTCTCCTTCCAAAACAGTGGGAGCATCTCA--GTAAAAGATGCTCTTGAGACAAGCGTGGGAAGATGACACAGTGAGACCCGACTCACGGCTGGGACGTTCC--------AAGTTGGGAGCCAAACGCAGGCGCAAAAGGCAGCCGTTGTTTGATCGTGAAGTCGTCGGT-CCTAGGGGGTCTCTAAGCACATCGCTCTCCCACCCACTTTGAGAT-GTTAACATCCCATGTGG---GTGAGCCTGGTGTATTCATCGGCCTCGGATCTGGAGATGGCGCTGG-------GTCAATCAGAACCGCCCTGGCCAGCACCCA-GCAGTCCCAGCCCGGGGGCAAGCGGAAGACAGCGGCCCTGGAAGACCTGAGGCCGCTGCCGGCACCTGCCAG-CATCACCCTCGTTTCCCTCTGCACTTTCTCATATTCCCATATTCTCTTCTAAGAGACAGCAGTTGCATT-----TCTGGATTAAAACACTAGGAATACG s mm5.chr5 136467321 543 + 149219885 AAGGGGACATAAGTGCCATCCCAATCAGAGAACT-----------CTGGGGGGCGGAGGGGGGGGG----------CTTGGGCAGGGGT-GGCCATGGAGGTAGAAGGAGGG--------------------------------------------------------------------------AGGGCCAGCTGA--AAGCATGAGGAGGGGTCTCTA---GAGGGCATGCTTCTA---ACATTACAGTGAGAGTGTGGGAGAGTAGGGGATGCTCTATAAACA--CGTGAG----------------------CTCTTTGTTCTGACAGTCCCTTGGTGAAGCTTGGGTGC---ATGCTGGCACAAAAGCTGACAGTCACCCCAT-GTCA---CATCAGTACCTCTAGGGTCTACAAACATGG-AAGCTACTGCCCATGTGGTAATCGCGAACATCCACT-------GTAAGCC---------------CCCAGAGTTTGCAGGCTAAACTAGCTTGCTAGTCAAAGAGAACATCTTAGGCTGCTTTCCACGCAGACGCTCTGTGAAAGCAA---AAAAAGAACCCCACTGG----------------GCCTGCACCTGCCAGACACAGCTCTCTTTCCAAACTGGGCTT--TTATAGTCTTATACTATCATTTAGACGAAA-----TGCTTTCTTGATCTTGAATAAGACAATTGAAATAAG a score=11175.0 s hg17.chr7_random 757368 55 + 778964 TTATTTACTTAGTTTTATACATATATGTATCTATTTTATACATACACATACACAT s panTro1.chr6_random 67028463 55 + 67355074 TTATTTACTTAGTTTTATACATATATGTATCTATTTTACACATACACATACACAT s mm5.chr10 47898128 55 - 130633972 TTTTCTCCTTATTTTTTTACATATGTTTATTTATTTTATGCATACATGCACACAT a score=2110.0 s hg17.chr7_random 757934 22 + 778964 GCACTCAGCGCAGTGTTTGTTG s panTro1.chr6_random 67029028 22 + 67355074 GCACTCAGCGCAGTGTTTGTTG a score=3311.0 s hg17.chr7_random 757956 23 + 778964 GGGGCCTGGTGCTGCCTGGAGGG s panTro1.chr6_random 67029050 23 + 67355074 GGGGCCTGGTGCTGCCTGGAGGG s rn3.chr12 30540508 23 - 46649226 GAGACCTGGTGCTAAGCTGTGTA a score=0.0 s hg17.chr7_random 757979 1 + 778964 C a score=100.0 s hg17.chr7_random 757979 1 + 778964 C s panTro1.chr6_random 67029073 1 + 67355074 C a score=5685.0 s hg17.chr7_random 757980 13 + 778964 AAGTCTTCACACC s panTro1.chr6_random 67029074 13 + 67355074 AAGTCTTCACACC s mm5.chr5 136468232 13 + 149219885 AAGTTTTCAAGCC s rn3.chr12 30540531 13 - 46649226 AAGTCTTCAAGCC a score=5891.0 s hg17.chr7_random 757993 40 + 778964 GGACATGCAAAGACGCGCTATTTTCCAAAGACAA---------GTTAGC s panTro1.chr6_random 67029087 40 + 67355074 CGACATGCAAAGACGCGCTATTTTCCAAAGACAA---------GTTAGC s mm5.chr5 136468245 47 + 149219885 AAGCATGCAAAGAGGACTTGATGTCCAAAACCCATGATGGATGGATA-- s rn3.chr12 30540544 43 - 46649226 AAGCATGCAGAGAGGACCTGTTGTTCAAAAACCATGATG----GGGA-- s canFam1.chrUn 1819492 39 + 91062872 GGCCGCGGACAGAGGCACTATTTTCCGGAGCAGAT--------AGGA-- a score=2255.0 s hg17.chr7_random 758033 2 + 778964 GA s panTro1.chr6_random 67029127 2 + 67355074 GA s mm5.chr5 136468292 2 + 149219885 GA s rn3.chr12 30540587 2 - 46649226 GA s canFam1.chrUn 1819531 2 + 91062872 GA s galGal2.chr14 4274046 2 + 20603938 GG a score=111478.0 s hg17.chr7_random 758035 68 + 778964 CACTCACATCCACTTCCCCTTGATCAACGACATAGAAGTTGTCTCCTTCATTCCCTGTAACAAAAGAA s panTro1.chr6_random 67029129 68 + 67355074 CACTCACATCCACTTCCCCTTGATCAATGACATAGAAGTTGTCTCCTTCATTCCCTGTAACAAAAGAA s mm5.chr5 136468294 66 + 149219885 TACTTACATCTACTTCTCCTTGGTCAATCACATAGAAATTATCTCCTTCATTCCCTATGACAGAAG-- s rn3.chr12 30540589 67 - 46649226 CACTCACGTCTACTTCTCCTTGGTCAATCACGTAGAAATTATCCCCTTCGTTCCCTACAACAAAAC-A s canFam1.chrUn 1819533 68 + 91062872 TACTCACGTCTACTTCTCCTTGGTCAATCACATAGAAGTTATCTCCTTCGTCCCCTGGAACAAAAGAA s galGal2.chr14 4274048 68 + 20603938 TACTCACATCCACCTCGCCTTGATCAATCACATAGAAGTTGTCTCCTTCATCACCTGGAAGCAAAATA s fr1.chrUn 56280061 68 + 349519338 CACTTACGTCCACTTCACCTTGATCAATCACGTAAAAGTTGTCGCCTTCGTCACCTGGAGGGAAAAAC s danRer1.chr5 33147926 63 - 40038624 CACTTACATCCATTTCACCTTGATCAATAACGTAAAAATTATCTCCTTCATCCCCTAAAATGA----- a score=2414.0 s hg17.chr7_random 758103 3 + 778964 GAA s panTro1.chr6_random 67029197 3 + 67355074 GAA s rn3.chr12 30540656 3 - 46649226 AAG s galGal2.chr14 4274117 3 + 20603938 AAA s fr1.chrUn 56280129 3 + 349519338 AAA s danRer1.chr5 33147989 3 - 40038624 GAA a score=0.0 s hg17.chr7_random 758106 11 + 778964 AGTCAACAGAT a score=2726.0 s hg17.chr7_random 758106 7 + 778964 AGTCAAC s panTro1.chr6_random 67029200 7 + 67355074 AGTCAAC s mm5.chr5 136468360 7 + 149219885 AGACAAC s rn3.chr12 30540659 7 - 46649226 AGACCGC s galGal2.chr14 4274120 7 + 20603938 AGATGAC s fr1.chrUn 56280132 7 + 349519338 GATTCGC a score=3206.0 s hg17.chr7_random 758113 4 + 778964 AGAT s panTro1.chr6_random 67029207 4 + 67355074 AGAT s mm5.chr5 136468367 4 + 149219885 AGAT s rn3.chr12 30540666 4 - 46649226 AGAT s fr1.chrUn 56280141 4 + 349519338 AAAT a score=-4587.0 s hg17.chr7_random 758117 41 + 778964 ACAAA---GTACATCCAGACATACAAGTTACAGT-----TTCTCTTGCA s panTro1.chr6_random 67029211 41 + 67355074 ACAAA---GTACATCCAGACATACAAGTTACAGT-----TTCTCTTGCA s mm5.chr5 136468371 46 + 149219885 GTAAAA-TGTGAAACAAAACAAGTTAGATACTGT--TGGTTATCTGGCA s rn3.chr12 30540670 46 - 46649226 GTAAAA-TGTGAAACGAAATGGGTTAGAGAGTCT--TGGTTATCTGGCA s fr1.chrUn 56280145 38 + 349519338 TGAAAGTTATTGGGCCACATATTTGGGT-----------CTCTCCTAAA s danRer1.chr5 33147992 41 - 40038624 --------GCACAATACATCAGTTTAACTACTTTACACGTTTTATTACA a score=5198.0 s hg17.chr7_random 758158 20 + 778964 A---ACGACTTTCGCAACACTGT s panTro1.chr6_random 67029252 20 + 67355074 A---ACGACTTTCGCAACACTGT s mm5.chr5 136468417 20 + 149219885 A---AGAACCCTTGTAACTATGT s rn3.chr12 30540716 20 - 46649226 A---AGGACCCTTGTAACTATGT s fr1.chrUn 56280183 23 + 349519338 ATCTACAACTTGCTCAGTGTTCT a score=706.0 s hg17.chr7_random 758178 29 + 778964 -----TGCAGAG--------ACCCTCGAAGCAACATCCTGGG s panTro1.chr6_random 67029272 29 + 67355074 -----TGCAGAG--------ACCCTGGTGGCAACATCCTGGG s rn3.chr12 30540737 37 - 46649226 -----TGCCGAGTAATACCTGCCCTAGGTGCCAGTTCCTGGG s fr1.chrUn 56280206 38 + 349519338 TATTATTACGAGCATC----TCTTCATTCAGAATATACTGTA a score=4602.0 s hg17.chr7_random 758207 38 + 778964 TGCTACCAATTC-----TTTTTAATGACAAGATTATACAAACA s panTro1.chr6_random 67029301 38 + 67355074 TGCTACCAATTC-----TTTTTAATGACAAGATTATACAAACA s fr1.chrUn 56280244 40 + 349519338 ---TATTAATGCTTACTTTTGTTATTACAAGACGGTTCCAGCA a score=48202.0 s hg17.chr7_random 758245 543 + 778964 TTGAGATAACTTGTTAAAGAGCCTGTTCTTAAGTTTCATTAGTGAACTTTCTCTAAACAATGAGAGGTGTttttctttttgtttgttttttgttttttttgagacggagtcaggctctcggctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagcctctggagtacctgggattacaggcacctgccaccacgcccagctaatttttttgtagttttagtagagatggagtttcaccatgttggccaggctggtttcaaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccTCACAATGAGAATTTTAtgcgtgtgtgtgtgtgtgtgtgtgtgtg--------tgtataattttatattactttagttttatacatatgtatatat----tttatatttaCTTAGTTTtatacatatatgtatctattttatacacacacatatgtatatatgtgtacatatatgtatacatgtacacacatatgtgtgcaca s panTro1.chr6_random 67029339 555 + 67355074 TTGAGATAACTTGTTAAAGAGCCTGTTCTTAAGTTTCATTAGTGAACTTTCTCTAAACAATGAGAGCTGTttttctttttgtttgttttttgttttttttgagacggagtcaggctctcggctcactgtaacctccacctcccagggtcaagcgattctcctgcctcagcctctggagtacctgggattacaggcacctgccaccacgcccagctaatttttttgtagttttagtagagatggaatttcaccatgttggccaggctggtttcgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccTCACAATGAGAATTTTATGCTtgtatgtgtgtgtgtgtgtgtgtgtatatatatatataattttatattaCTTTAGTTTtatacatatgtatatattttatttatatttacttagttttatacatatatgtatctattttatacatacacacatatgtatatgtgtacatatatgtatacatgtaCACACACACGTGTGCACA a score=29144.0 s hg17.chr7_random 758845 328 + 778964 agtctatatatatCCTTTTGAAAtttgagacagagtcttactgtatcacctaggctagagtgcaatggcgtgatctcagcccactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctctggagcagctgggattacaggcacccgccaccacacccagctaatttttatttttagtagagacagggtttcaccatgctggtcacctggaccaccaggctggtctcgaacccctgacctcaggtgatctgcccacctcagcctcccaaagtgctgggattacaggcgtgggccatcgtgcctgcccTTATGCTATT s panTro1.chr6_random 67126909 326 + 67355074 AGTCTATACATATACTTTTGAAAtttgagacag--tcttactctgtcacctaggctggagtgcaatggcgtgatctcagcccactccaacctccgcctcccaggttcaagcgattctccttcctcagcctctggagtagctgggattacaggcacccgccaccacgcccagctaatttttatttttagcagagacagggtttcaccatgctggtcacctggaccaccaggctggtctcgaacccctgacctcaggtgatctgcccacctcagcctcccaaagtgctgggattacaggcgtgggccatcgtgcctgcccTTATGCTATT a score=4570.0 s hg17.chr7_random 759173 37 + 778964 TTTTTTTTAAGTGCATAGTCCATTTTTCCCCTCTGGA s panTro1.chr6_random 67127235 37 + 67355074 TTTTTTTTAAGTGCATAGTCCATTTTTCCCCTCTGGA s fr1.chrUn 56282164 37 + 349519338 TTTTTTTTATGCTGTTTGTGCTTTCAATTTCTGTGAA a score=0.0 s hg17.chr7_random 759210 3 + 778964 CTT a score=602.0 s hg17.chr7_random 759210 3 + 778964 CTT s panTro1.chr6_random 67127272 3 + 67355074 CTT s canFam1.chrUn 1820021 3 + 91062872 CTC a score=1384.0 s hg17.chr7_random 759213 9 + 778964 TGGCTCCGA s panTro1.chr6_random 67127275 9 + 67355074 TGGCTCCGA s canFam1.chrUn 1820024 9 + 91062872 CTGCTCAGA s fr1.chrUn 56282201 9 + 349519338 TACCACAAA a score=2987.0 s hg17.chr7_random 759222 7 + 778964 GGAGCAG s panTro1.chr6_random 67127284 7 + 67355074 GGAGCAG s canFam1.chrUn 1820033 7 + 91062872 GCAGCAG s galGal2.chr14 4274839 7 + 20603938 GAAAAAG s fr1.chrUn 56282210 7 + 349519338 GGAACAC a score=-1493.0 s hg17.chr7_random 759229 3 + 778964 --GCA s canFam1.chrUn 1820040 1 + 91062872 --G-- s galGal2.chr14 4274848 1 + 20603938 --A-- s fr1.chrUn 56282217 3 + 349519338 TTA-- a score=772.0 s hg17.chr7_random 759229 3 + 778964 GCA s panTro1.chr6_random 67127291 3 + 67355074 GCA s mm5.chr11 12316372 3 - 121648857 GCA s galGal2.chr14 4274846 3 + 20603938 GGA s fr1.chrUn 56282217 3 + 349519338 TTA a score=535.0 s hg17.chr7_random 759232 6 + 778964 GAACG--T s panTro1.chr6_random 67127294 6 + 67355074 GAACG--T s mm5.chr11 12316375 6 - 121648857 GCCCT--T s rn3.chr12 30541464 6 - 46649226 GAACA--T s canFam1.chrUn 1820041 6 + 91062872 GAATA--T s galGal2.chr14 4274850 8 + 20603938 GAAGGATT s fr1.chrUn 56282220 5 + 349519338 -TACA--T a score=133101.0 s hg17.chr7_random 759238 69 + 778964 ACCTTGCTGTATAACAGTCTCCCCAGCGATGTGAGTGACAGGGAACATGGCATCGAATATGTCACTGAA-- s panTro1.chr6_random 67127300 69 + 67355074 ACCTTGCTGTATAACGGTCTCCCCAGCGATGTGAGTGACAGGGAACATGGCATCGAATATGTCACTGAA-- s mm5.chr11 12316381 69 - 121648857 ACCTTGCTGAATAACCGTCTCTCCAGCAATAAAGGAGACTGGAAACATAGCATCAAAAATGTCACTGCA-- s rn3.chr12 30541470 69 - 46649226 ACCTTGCTGTATGACTGTTTCCCCATCGATGTGGGTGACAGGAAACATGGCATCGAATATGTCACTAAA-- s canFam1.chrUn 1820047 69 + 91062872 ACCTTGCTGTATGACGGTCTCCCCAGCGATGTGCGTGACAGGAAACATGGCGTCGAATATGTCACTGAA-- s galGal2.chr14 4274858 69 + 20603938 ACCTTGCTGTATGACCGTTTCTCCTGCGATGTGTGTAACAGGAAACATGGCATCAAATATGTCACTGGA-- s fr1.chrUn 56282225 69 + 349519338 ACCTTGCTGAATAACTGTTTCTCCTGCAATGTGGGTGACTGGAAACATGGCATCAAATATGTCACTAAA-- s danRer1.chr5 33148061 71 - 40038624 ACCTTGCTGAATGACAGTCTCCCCTGCAATGTAGGTGACTGAGAACATGGCGTCAAATATGTCACTGCGAA a score=4674.0 s hg17.chr7_random 759307 8 + 778964 AAGCAAAA s panTro1.chr6_random 67127369 8 + 67355074 AAGCAAAA s mm5.chr11 12316450 8 - 121648857 GGACAGAA s rn3.chr12 30541539 7 - 46649226 AGACA-AA s canFam1.chrUn 1820116 8 + 91062872 AGAGAAAA s galGal2.chr14 4274927 8 + 20603938 AAAGGAAA s danRer1.chr5 33148132 8 - 40038624 GAGCAAAA a score=-1445.0 s hg17.chr7_random 759315 2 + 778964 CA- s panTro1.chr6_random 67127377 2 + 67355074 CA- s mm5.chr11 12316458 2 - 121648857 GA- s rn3.chr12 30541546 2 - 46649226 CA- s canFam1.chrUn 1820124 2 + 91062872 CG- s danRer1.chr5 33148140 2 - 40038624 -AA a score=-986.0 s hg17.chr7_random 759317 4 + 778964 CGCC s panTro1.chr6_random 67127379 4 + 67355074 CGCC s mm5.chr11 12316460 4 - 121648857 GACC s rn3.chr12 30541548 1 - 46649226 C--- s canFam1.chrUn 1820126 4 + 91062872 CATC a score=11337.0 s hg17.chr7_random 759321 223 + 778964 AAATTAGGGCTGCAGGCAGCACAGGGACATTTAAACC--CTTCC----------------TCCCCTCATTTCAC--------AGTCTTGTGTAAATCGCTTCACAGtcattggggaaaatgagaaaatccatgagagttcaaagaagaaaattgaaatccttcatgacccgaaggccagagatggcaccgccagccctgggcacacaacctcccagc----cc--cattt------ctgttctgtgcacagacgcagtttg s panTro1.chr6_random 67127383 223 + 67355074 AAATTAGGGCTGCAGGCAGCACAGGGACATTTAAACC--CTTCC----------------TCCCCTCATTTCAC--------AGTCTTGTGTAAATCGCTTCACAGTCATCGGGGAAAATGAGAAAATCCATGAGAGTTCAAAGAAGAAAATTGAAATCCTTCATGACCCGAGGGCCGGAGATGGCACCGCCAGCCCTGGGCACACAACCTCCCAGC----CC--CATTT------CTGTTCTGTGCACAGACGCAGTTTG s rn3.chr12 30541549 240 - 46649226 AGAGAAGAGCTGTAGCAGGCGCCAGTCCAAGTCAACCTGCTTCCCACAACATATACCCAGTCCCGTCCATTCGCAACCTCTTAGCCTCTCAGGATTCAGTCTGCAGGCCTTGGGGAAA-----AGATCCCCTCCAAGTTAAAAGAGG--AATTGAGG-CCTTCACCAGTCGTGCTCTGAAGA--GCCACATGGGCACTCTGTACACAGCCAACAGGCACATCC--TGCTTGTTTGACTTTCTTGT---------CTGTTTG s canFam1.chrUn 1820138 174 + 91062872 GAGCTGGAGCGACGTGGGGCGCGGA--------------CTCCA----------------CTGCCTCACCTCAC--------A---CAGAGCAACCAGCTCTGC--TCCCCCAGGAAAAGG-------------------AAAAAAGGAAATCACCCCCCACCACTACC----ACCCTGTCATAACCCTGCCGTCC--AGGCA---------CCAGC----TCGTCATTT-GCAGATCCTTCTGT-----GACACAATTCA a score=100.0 s hg17.chr7_random 759544 1 + 778964 c s canFam1.chrUn 1820312 1 + 91062872 C a score=100.0 s hg17.chr7_random 759544 1 + 778964 c s rn3.chr12 30541998 1 - 46649226 C a score=100.0 s hg17.chr7_random 759544 1 + 778964 c s panTro1.chr6_random 67127606 1 + 67355074 C a score=40937.0 s hg17.chr7_random 759545 217 + 778964 tgttttggtttttacaaaaatggggtcatgcc-atacatgc--attttgaactccatttagaaaaacaaaagtaacaatagattgtgaaca-ttctcccatcggtaaatacaattctactagaatacaaCCAGCAATCTTGATGACATG---TTTTCTG---------------CATTGTTTTCCTTTC--AGGGAGAACACTTTCAGTCGAAGGAG---CCTGGGACCCT----------------------------------------------TGACAC--------------------------------------------AGAAGTG s panTro1.chr6_random 67127607 220 + 67355074 TGTTTTGGTTTTTACAAAAATGGGGTCACGCC-ATATATGC--ATTTTGAACTCCATTTAGAAAAACAAAAGTAACAATAGATTGTGAACA-TTCTCCCATCGGTAAATACAATTCTACTAGAATACAACCAGCAATCTTGATGACATG---TTTTCTG---------------CATTTTTTTCCTTTC--AGGGAGAACACTTTCAGTCGAAGGAGAAGCCTGGGACCCT----------------------------------------------TGACAC--------------------------------------------AGAAGTG s mm5.chr5 136469576 225 + 149219885 TGCCTGGCTTCTTACAAGAAAGGAATGAGTTT-ATGGGCACTGTTTTTACAATCCAGTTAGGAAAGT--AAGTCACAGTCGGTTATGAGCACTTCTCATGCCAATAAATACAATTTGTTTGGGACGTGGCCATCAAGCCTGATTGTGTGGATTTTGCTG---------------GCTTTTTCCCCCTTCTTGAGGAAAATATTTACAGTCACAGGAG-TGTTCATAACTCC----------------------------------------------AGACAC--------------------------------------------AGAGATG s rn3.chr12 30541999 331 - 46649226 TGCCTGGCTTCTTACAAGAAAGGAATGACTTTAATGGGTACTGTTTTTACAATCCGGTTGGGAGAAT--AAGTCACAGTCGGTTATGAGCACTTCTCATGCCAATAAACACAATTTGTTTGGGACGTGGCCATCAAACCTGATTATGTGGATTTTTCTGGCTTCTCCCCTCCCTCTTTTTTTCCCCTTCTGAAGGAAAATATTTACAGTCATAGGAG-TGTTCATAGTTCTCTCCCCAGCAGGACTGGGGATGTAGCTTAATGGTAGAGCACTTGCCTAACATGTGAGAAGCCCTAGGTTTAATTCCCAAGTAGTCCAAAAATGTAAAGAAGTG s canFam1.chrUn 1820313 171 + 91062872 TTTCTGGGTTTTGACAAAAATGGAATCACACT-GTACATACTGCTTTGGA----CACAAAACAAAGTAAATATATCGCCAGAATGT------TTATCACATTGGGAAACACAGTCCTACCAGAACGC--------------------TG---CTTTCTG---------------CATG------CTTCCTGAGGGGGGGCGT------------------CCTGAGGCCTC----------------------------------------------AGAGGC--------------------------------------------AGGAGTG a score=0.0 s hg17.chr7_random 759762 22 + 778964 ACATGTGCATTCGGAACCTCTC a score=972.0 s hg17.chr7_random 759762 4 + 778964 ACAT s panTro1.chr6_random 67127827 4 + 67355074 ACAT s mm5.chr5 136469801 4 + 149219885 AGAC s rn3.chr12 30542330 4 - 46649226 AGAT a score=311.0 s hg17.chr7_random 759766 2 + 778964 GT s panTro1.chr6_random 67127831 2 + 67355074 GT s rn3.chr12 30542334 2 - 46649226 AT a score=100.0 s hg17.chr7_random 759768 1 + 778964 G s panTro1.chr6_random 67127833 1 + 67355074 G a score=0.0 s hg17.chr7_random 759768 1 + 778964 G a score=2905.0 s hg17.chr7_random 759769 15 + 778964 CATTCGGAACCTCTC s panTro1.chr6_random 67127834 15 + 67355074 CATTCGGAACCTCTC s mm5.chr5 136469908 15 + 149219885 CAGTTAGTACCCAGA s rn3.chr12 30542336 15 - 46649226 CAGTCAGCACCCAGA a score=54402.0 s hg17.chr7_random 759784 489 + 778964 TGTGGAAAACACAGACCCTTCATGACACGCAAACT------------CGAAGCCGGTGAGGCCGAGTCTCAGGGCTGCGCCAACCAGGAAGCCTGGCTGTCCAATGTTCCAAATCTGGATGTGAAATGGACCATGCAGACAGGACCCAAGGG------GCATGGGGGAGCTGGCAGAGGCACCCGGGACAAGTGGG-GAAGCACCTGTCGGCCAGGAAGGT---AGAGA------------GGCACCTACCCCAGA-ACACGG--------TGCCAGC-GTCACACTCTTATTAAC-----------------------------AGATGCAATAACCACCTTCGGAGACCAGACCCCTCAAAGAGCACTCAGCCCACAA-----------TGTGACGC-AGAGAAACCAGAG--------------ACCCAGGCAGGGAGTG--CACCCACGGGGACACTCCGAGGGTGGCCTCCTGCCTGC--CCTGATTACTTAAAAAGGAG--------------------------ATTCTTGGAAACCTTTGCGGG-CCCACAGGTGCACCCTGACTCCCAGGGATGGGGGCTGAGCCACCCAGGAAACAAATATGAAATCAA s panTro1.chr6_random 67127849 486 + 67355074 TGTGGAAAACACAGACCCTTCATGACACGCAAACT------------CGAAGCCGGTGAGGCCGAGTCTCAGGGCTGCGCCAACCAGGAAGCCTGGCTGTCCAACGTTCCAAATCTGGATGTGAAATGGACCATGCAGACAGGACCCAAGGG------GTATGGGGGAGCTGGCAGAGGCACCCGGGAAAAGTGGG-GAAGCACCTGTCGGCCAGGAAGGT---AGAGA------------GGCACCTACCCCAGA-ACACGG--------TGCCAGC-GTCACACTCTTATTAAC-----------------------------AGATGCAATAACCACCTTCGGAGACTGGACCCCTCAAAGAGCACTCAGCCCACAG-----------TGTGACGC-AGAGAAACCAGAG--------------ACCCAGGCAGGGAGTG--CACCCACGGGGACACTCCGAGGGCGGCCTCCTGCCTGC--CCTGATTACTTAAAAA-GAG--------------------------ATTCTTGGAAACCTTTGCGGGCCCCACA-GTGCACCCTGACTCCCAGGGATGGCGGCTGAGCCACCTAGGAA--CAATATGAAATCAA s mm5.chr5 136469923 546 + 149219885 TTTGCAGGACAGAGATGTGTTAGGACACGTGGACTCCCCAAAGTTTACAAAGCTGGGGGAACCCAAAGTGGTCTCCGTGCCAACCCTGAGGCTTGGTGGCTTCCTCTTCTAAATGTAGGTGTGAAATGGGCTGT-TGGACAGAAGCCAAAGGAATTAAGAAGGGCTGGGCTATTAAAGTCACCAGAAATCGTAGGA-CATGCATC--ATGGCCACATTTGTCCCAGAGGTGCCATCTCATCAGCACAGTCATTAGA-ACACAGTCCAAAAATGCCAGC--CCATTCTCCTG----------------------------------AAATGTAACATCTGCCACCAGAGACCTACCTGTCTCTGGGGCTCCTGACTCACCAAGACAGGAGGCTGCGCTGCTGGAGAGGCTAAGGTACTA-TACAGAGCCCCCAGCCAGGCAATGTTCATGCCTGGAAACAT----GGGACACCTCCCTGTCTGT--CCTGAATGTTCAAAACGGAGCGTA---------------------AATTGAGGCAAGCCTCAGGAGAACTCAAGAGCCCTCTCTGGCT----GGAAAATATACAAAACCATCTGGGGAGAAAACACAAAATAAA s rn3.chr12 30542351 554 - 46649226 TTTGCAGGACAGAGGTGGGCTAGGATATGTGGACC-CCCAAAGCTTCCAAAGTTGG-GGAACCCAAAGTGATCTCTATGCCAACCCTCAGGCCTGGTGGCTTCATCTTCTAAATGTAGGTGTGAAATAGGCTGT-TGGACAGAAGCCAAGGGGAGTGAGGAGGGCTGGCCTATTAGAGTCACCAGAAATAGTAGGGACATGCAAC--ATGGCCACATTTGT-----------------------------CCCAGATGTGCCA--------TCTCACC-AGCACACTCATTAGAACACAGTCCAAAATGCCCATCCATTCTCCTGAAACGTAGCAGCCACCATCAGAGACCTACCTGTCTCTGGGGCTCCTGGCTCCCCAGGACAGGAGGCTGTGATGC--TAGAGGTTAAAGTCCAAGTATAGAACCCCCAGTCAGGGGGTGTTCGTGCCTGGAAACAT----GGGGTGCTTGCCTGTCTGC--CCTGAATGCTTAAAACGGAGTAGACAGAGATTGAC----------AAATCAGGCAAGCCTCCGAAGAACTCAAGGGCCCTCTCTGGCT----GGAGAACACACAAAGCTATCTGGGAAGAAAACACAAAATAAA s canFam1.chrUn 1820484 400 + 91062872 TGTCGGAGACGC---------------------CT----------------------GATGCTCAG-------GCTATGCCAA-CAGGCAGTCAGGGCATTTAATTTCCTAAGTGTGGCTGTGGCCTGGATGGAACAGGTAGGATGCACAAG------GCAGGGAGG------TAGAGTGTGC----ATGGTGGGG------ACCCTTTGACTCCGCCAAC--------------------CGCA-----ACCAGA-ACACAA--------TGTCAGAGGTCAGCCTCTTGCTCCCA----------------------------AAATGCACTGGCCACCTTCAGGA-------------------------------------------------GC--GGGCAGCTGGTG-------------CCCCTCATGGGGAAATG--CACACCGCAGAGCTC----AGGGTGGCCTTCCTCCTCTCACCTGGCTGCAGCAATAGGAG-----AAAGCTGGGCCTAATGGCTCAGGCTGAGCCAACCTCAGAGGTGCTCACAGG-----TCTGGATGC--AGGTTGGGTGCCAAGCCTCC--AGAAGCAAGTGCGAAGTCAG a score=5677.0 s hg17.chr7_random 760273 49 + 778964 AGATCCAGACAG--CCCTGACCC------TCCTGATTCCAGGGTCCATAAATAAGTC s mm5.chr5 136470469 54 + 149219885 AGATCCAGACTGTTCCATGCTCC---GGTTCCAACCTTCAGAGCACATAAATAATTC s rn3.chr12 30542907 50 - 46649226 AAATCCAGATTGTTCTGCGCTCT---GGGTCCAACCTTCAGAGAATATGAATA---- s canFam1.chrUn 1820884 55 + 91062872 AGATGCAAACCGCCCTGTGCTCTGCTGTTTCCAGGGTCCAGA--ACATTACCAAGTC a score=819.0 s hg17.chr7_random 760322 3 + 778964 ATT s rn3.chr12 30542957 3 - 46649226 ATT s canFam1.chrUn 1820939 3 + 91062872 ATT a score=1126.0 s hg17.chr7_random 760325 16 + 778964 CTTAAAATAGTGGTTG s canFam1.chrUn 1820942 16 + 91062872 CTTAAAGTAGTAGCTG a score=2333.0 s hg17.chr7_random 760341 20 + 778964 TTTTCTCTCTATTTAAGAAG s rn3.chr12 30543397 20 - 46649226 TCCTCTCTCTATTCGAACGG s canFam1.chrUn 1820958 20 + 91062872 TTTCCTCTCTAAGAAAGAGG a score=1332.0 s hg17.chr7_random 760361 109 + 778964 TGCTTCTTTTTTGAGTCCTTGTTCCCAACTTCCCTGGCAACTCAGTTTCCTGTTTCCTCCGGGAGGAAGGCAGAACTGCAGGAGAGGTCAGTGTGTGGCAGGGCTGTAG s rn3.chr12 30543417 91 - 46649226 G----CTTCTCAGAGCTCTGATATCCTGGTTC---------TTAGTTTTCTGTGCTCGCTGGGAGGAAGGCAGTCACATGGGGGAGGT--GTG---GGCAGGTCTCGGG a score=1275.0 s hg17.chr7_random 760889 100 + 778964 CACCTGGGGAGGGGTCAGTGGGTGGCAGGGCTGTAGGGAGAGCTGGGGGCCCTCCAC----TCTCCGCCCATGGGTGGTGGGGCTTGGCCATGCTGCCCCAGCC s canFam1.chrUn 1820982 80 + 91062872 CACCATGGGGGGAACCAGTGGGTGGCAGGGGCGTCAGAGCATTTGCAGGGTCCCCGCAACCCCTCCTTCCCTG------------------------CACAGAC a score=26870.0 s hg17.chr7_random 760989 149 + 778964 CCAGTCCCGGGCACCTGGCCCCGG---TGGGGACATTTCCTGGCCACGGCCTCCCTGGTGCACGCATCTGCAGGAGCCGCCCTGGCACCGTTCTCTAAACTGCATTTCTTCAAAA-CCACAA-AGTATGGGTTCTCAGAATGAACAGACCTTTA s mm5.chr5 136471149 135 + 149219885 CCAGCTCTGGATGTCTGTCCTCGGA--CAAGGGTACATCTTGGCCATAGTATCTCCAG------CATCTGCAGGAACCATCCCAGCCTGG---------CTGCATCGCCTCAAAAACCACAA-AACAAGGGTCC-AAGAAAGAGCAGGTCTTTA s rn3.chr12 30543508 134 - 46649226 CCAGCTCTGGATGGCTGTCTTCTGA--CAAGGGTATTTCTTGGCCGTAATATCTCTAG------CATCTGCAGGAACTATCCCAGCCTGG---------CTGCATCTCCTCAAAA-CCACAG-AACAAGGGTCT-GAGAAAGAGCAGGTCTTTA s canFam1.chrUn 1821062 141 + 91062872 -------CTGGTATCTGTCCCCTGGCCCAGGCATATTTCCCAGCCACCCCTTGCCTGG-GAGAGCATCTGCAGA---TGTGTCTGGTCTGTTTTCTAAACTGCATTTCCTCAAAA-CCACAGCATCAAGGATCC-CAAAATGAACAGATCTTTA a score=273.0 s hg17.chr7_random 761138 1 + 778964 A s mm5.chr5 136471284 1 + 149219885 A s rn3.chr12 30543642 1 - 46649226 A a score=91.0 s hg17.chr7_random 761138 1 + 778964 A s canFam1.chrUn 1821390 1 + 91062872 A a score=18259.0 s hg17.chr7_random 761139 57 + 778964 GAAATCATTTTACAATTCCTCCCT-CTTTTTTAAAAAAATA--TTTCAA--CTTATAATGGT s panTro1.chr6_random 67032179 57 + 67355074 GAAATCATTTTACAATTCCTCCCT-CTTTTTAAAAAAAATA--TTTCAA--CTTATAATGGT s mm5.chr5 136471285 56 + 149219885 AAAACAACCTTTTGGTTCCTCCC----ATGCTAAAATAATAACCCTCAG--CTCATAATGGT s rn3.chr12 30543643 62 - 46649226 GAAATGACCTTTTTGTTCCTTCCTCCCATGCTAAAATAATAACCCTCAGCTCTCATAATGGT s canFam1.chrUn 1821391 53 + 91062872 GAAATGATTTTACAATTCCTACTT-CATTTTTAAAAA------CGTTTA--CTGGTAATGGT a score=91.0 s hg17.chr7_random 761196 1 + 778964 A s canFam1.chrUn 1821444 1 + 91062872 A a score=273.0 s hg17.chr7_random 761196 1 + 778964 A s panTro1.chr6_random 67032236 1 + 67355074 A s mm5.chr5 136471341 1 + 149219885 A a score=9511.0 s hg17.chr7_random 761197 66 + 778964 AAATATTCCATTAAATGCCTTAAGTAATCAAATGGACACTGTGTACCCCCCACCACCCAGCTCAGG s panTro1.chr6_random 67032237 66 + 67355074 AAATATTCCATTAAATGCCTTAAGTAATCAAATGGACACTGTGTACCCCCCACCACCCGGCTCAGG s canFam1.chrUn 1821445 65 + 91062872 CAATATTTCCCCAAATGCCATTAGCAGTGAAGCCAAT-CTCAGGACCCACCACCATGCAGCCTGGG a score=21423.0 s hg17.chr7_random 761263 224 + 778964 ACCCTGCTGCCTCCACCACTCTCTCCTGGAAAACTGTCCAGCATCACAGCTGCGGCTCCAGCCTCCTCCGGGCCCAGGTGTGGAGGGCAAGTGCTGCCTCCACCACCCTTGCTATGCGTCTCCACTTCACACATGGGCATCCGTGACCACACGTGTGCACCCGTGAAAAGCGTGCATTTCCAGTGGTGTCTGCATCATTTGCATATCACTGACAGAAAGATACC s panTro1.chr6_random 67032303 224 + 67355074 ACCCTGCTGCCTCCACCGCTCTCTCCTGGAAAACTGTCCAGCATCACAGCTGCGGCTCCAGCCTCCTCCGGGCCCAGGTGTGGAGGGCAAGTGCTGCCTCCACCACCCTTGCTATGCGTCTCCACTTCACACATGGGCATCCGTGACCACACGTGTGCACCCGTGAAAAGCGTGCATTTCCAGTGGTGTCTGCATCATTTGCATATCACTGACAGAAAGATACC a score=18617.0 s hg17.chr7_random 761487 80 + 778964 CTTTCACAATTCTATTCTCCCTCCTGACCCATATTTTCTGAAATGCACCTGGGTGAAAA--CATAAATCTGGAAGC-TTCTTT s panTro1.chr6_random 67032527 80 + 67355074 CTTTCACAATTCTATTCTCCCTCCTGACCCATATTTTCTGAAATGCACCTGGGTGAAAA--CATAAATCTGGAAGC-TTCTTT s mm5.chr5 136472204 62 + 149219885 CTTGTGTATCTCTGTTCTTCCTCTT---------------------ATCTGGGTGGAAATGCACTAATCTGGCAACTTTCTTT s rn3.chr12 30544505 62 - 46649226 CTTGTGCATCTCTGTTCTCTCTCTT---------------------ATCTAGGTGAAAATGCACCAATCTGGCAACTTTCTTT a score=783.0 s hg17.chr7_random 761567 5 + 778964 GCTCC s panTro1.chr6_random 67032607 5 + 67355074 GCTCC s mm5.chr5 136472266 5 + 149219885 TCTTC a score=32033.0 s hg17.chr7_random 761572 342 + 778964 TTTTACAGCTGCCTAGTAttcttttttttcttttaagagatggggtctcattttgttgcccaggctggagtataggggtgcgatcacagctcaccgcagcctccaactcctgggtttaaggtgtcctctcacctgagcctcccaagtagctgggactacaggcacgtgccaccacgcctgcttatttttattttttattttttaattgatgggtctcgctatgttgcccaggctggtctccaactcctgacctcaagcaatcctcctaccttggcctcccaaagtgctgggattacaggcatgagccgctgcacccgcccTGCCTGGCATTCTCTATATGAA s panTro1.chr6_random 67032612 342 + 67355074 TTTTACAGCTGCCTAGTAttcttttttttcttttaagagatggggtctcattttgttgcccaggctggagtataggggtgcgatcacagctcaccacagcctccaactcctgggcttaaggtgtcctctcacctgagcctcccaagtagctgggactacaggcacgtgccgccacacctgcttatttttattttttattttttaattgatgggtctcgctatgttgcccaggctggtctccaactcctgacctcaagcaatcctcctaccttggcctcccaaagtgctgggattacaggcatgagccgctgcacccgcccTGCCTGGCATTTTCTATATGAA a score=617.0 s hg17.chr7_random 761914 9 + 778964 AACCCTCGC- s panTro1.chr6_random 67032954 9 + 67355074 AACCCTCGC- s rn3.chr12 30544691 9 - 46649226 -AGCCTCCCT a score=60818.0 s hg17.chr7_random 761923 279 + 778964 TCCTTCACCTGTTCCTGCCCAGATGGACGTTTCCAGTGCTTCTG-GTTCCTGCCATCACACGCTGGGCCACGATGGACATGACAGAACTCCCCATGAACAGGGGGCAGGTCAATGTGGCTGCA---CCCCAGTGACTCGAGGCTCACGTTCCACTCACGTGCTTCTACCACAGCCTAAGCAAAGGCAGGGGTGGGCTGAAACC-CTTCCTGGGAGGTTTCAGTCTCCAGAGGGGGCTGTTCAGTCCTTGGTATCAATGAAAGCCGACTTTCCACACACCCAGGT s panTro1.chr6_random 67032963 279 + 67355074 TCCTTCACCTGTTCCTGCCCAGATGGACGTTTCCAGTGCTTCTG-GTTCCTGCCATCACACGCTGGGCCACGATGGACATGACAGAACTCCCCATGAACAGGGGGCAGGTCAATGTGGCTGCA---CCCCAGTGACTCGAGGCTCACGTTCCACTCACGTGCTTCTACCAGAGCCCAAGCAAAGGCAGGGGTCGGCTGAAACC-TTTCCTGGGAGGTTTCAGTCTCCAGAGGGGGCTGTTCAGTCCTTGGTATCAATGAAAGCCGACTTTCCACACACCCAGGT s mm5.chr5 136472392 270 + 149219885 TCACGCGTCCCTCCCTGCCCCGA-GGACTTTCCAGATATCCCCATGTTTATGCAATCACAGAGTGGGCCACAATGAGCATTCCAGAGCTCCTCAAGA--TGAGGGCAGATAAATATGATCACATCTCCCTATTG--TATGGGCTTGC-TTCCACT--TGCACTTCTGCTTGGGTT--GGCCAAGGTGGGAATGGACTGAAAATGTTTTCTGGGAAA--ACGGTCCCCAAACTGAGAGGTCTGGCTCTCGACGTCAGTCACAGATA--TTTGCACACGCAAAAGT s rn3.chr12 30544700 252 - 46649226 TCTTTCATCCCTCCCTGCCCTGA-GGACTTTCCAGATATTCCCATGTTTATGCAATTACAGAGTGGGCCACAATGAACATTCCAGAGCTCCCCA-GA--TGAGGGCAGATAAATACGATCGCATCTCCCTATTG--TATGGGCTTGC-TTCCACT--TGCACTTTTGCCTGGCTT------------------GGCCAAGGTG-TTTTCTGGGCAA--ACAGTCCCCAAACTGAGGGGTCTGGCTCTCAATGTCAGTCACAAATG--TTTGCACTTACCAAAGT a score=5053.0 s hg17.chr7_random 762202 67 + 778964 --GC---CTGGGCGTGGCCCCGCTCAGAGCAGCCCCTCCTGGAGTGCCTCTTAAAT------GAGCCTCACTGG-GTTG s panTro1.chr6_random 67033242 67 + 67355074 --GC---CTGGGCGTGGCCCCGTTCAGAGCAGCCCCTCCTGGAGCGCCTCTTAAAT------GAGCCTCACTGG-GTTG s rn3.chr12 30544952 75 - 46649226 AGGCTTACTGGGCACAGCCTTCTGTGGGACA----TTATTGAAGGGCCCCACATATATCTGCAAGCACAACAGTCATTC a score=15165.0 s hg17.chr7_random 762269 121 + 778964 CTCCGTTGGCCACACAGGTGTCCCT----CATCTCCCCAGGGACGGA---GGAACAC--AGTCCCCAACTCTCTGTGATCAGCAGAGCCCAGAGAGCCCAGCCTCGTGTACCAAAAAGGTCTGGGAGCCC s panTro1.chr6_random 67033309 121 + 67355074 CTCCGTTGGCCACACAGGTGTCCCT----CATCTCCCCAGGGACGGA---GGAACAC--AGTCCCCAACTCTCTGTGATCAGCAGAGCCCAGAGAGCCCAGCCTCGTGTACCAAAAAGGTCTGGGAGCCC s rn3.chr12 30545027 123 - 46649226 CCCCCCCCGCCCCCCAGGCTTAGCTGCGCGGCCATCACAGAAACAAACTGGGGACATGGAGTCGCCAA--AAATGCCACCTGAGGAGCC----AGGCTGGGTCTCACTTACCACAGAGGCTTAGAAG-GC s canFam1.chrUn 1821739 100 + 91062872 CCCTACTGACCACACAGGCATCCCA---CTCCCTCCCTGGGTACAGA----AAAAAC-----------------------AACAAATCTCAGAGAGCCCAGCCCCACTTACCGAAAAGTGCTGCTAGCCC a score=2266.0 s hg17.chr7_random 762390 18 + 778964 CATTTTTCTTCAGAGGAA s panTro1.chr6_random 67033430 18 + 67355074 CATTTTTCTTCAGAGGAA s rn3.chr12 30545150 18 - 46649226 AGGTTTCCTTCTGAGAAA s canFam1.chrUn 1822080 15 + 91062872 CATGTCTTTTGGAAG--- a score=12579.0 s hg17.chr7_random 762408 106 + 778964 ATGTTAATGCCCGAATGTCACCAGCTCATCGCCG--------ACAAAGGCCTGAACACAAACGTCTCCAGGCAACAGCCCCGAGGTGAGGTCAGCTCTGTCCATGTCCCCCCCG s panTro1.chr6_random 67033448 106 + 67355074 ATGTTAATGCCCGAATGTCACCAGCTCATCGCCG--------ACAAAGGCCTGAACACAGACGTCTCCAGGCAACAGCCCCGAGGTGAGGTCGGCTCTGTCCGTGTCCCCCCCG s canFam1.chrUn 1822095 106 + 91062872 AAGCTAACACTC--------CCAGTGCACCCCCGTCCCCATTATCAAGGCTTGGACACGGCTGTGTGCAGGATAGATGCCCATGCTCCCACCAGCTTGGCCCATCCCCCCACTG a score=59395.0 s hg17.chr7_random 762514 271 + 778964 CACGGCTTCACCCTCTTTTTCCACTGTCTGCCCCTT-TCACACAAAACCCCCATGGCTTCCTCTTTCTCTCAGCACTTAATGGCATTAAAAGGCCCTGGCCTCTTCTGTCTGTA-----AAAAACAGTTTTCTCTTCTCATCCAGCAGTCA-CTCTGGAAGGTT-ACGTGAAGCTGCTGGCTCAGATTTTAAATCGTCTCACATGTG-------GGTT---GCCCCACCTACCCCA----TCAACAAACACAGCTTCGCACTTCTGCATCAGAGGCTGTGCTGGGTTCTGGGG s panTro1.chr6_random 67033554 271 + 67355074 CACGGCTTCACCCTCTTTTTCCACTGTCTGCCCCTT-TCACACAAAACCCCCATGGCTTCCTCTTTCTCTCAGCACTTAATGGCATTAAAAGGCCCTGGCCTCTTCTGTCTGTA-----AAAAACAGTTTTCTCTTCTCATCCAGCAGTCA-CTCTGGAAGGTT-ACGTGAAGCTGCTGGCTCAGATTTTAAATCGTCTCACATGTG-------GGTT---GCCCCACCTACCCCA----TCAACAAACACAGCTTAGCACTTCTGCATCAGGGGCTGTGCTGGGTTCTGGGG s rn3.chr12 30545205 284 - 46649226 CTTGGCTCTACCCACTCCTCCTGCCTCCTTCCAACT-CCAGACAAACCTAATCCCTCCCCCTCCCTCTCTTAGCACTTAATGGCATTAAAAGGCACTGGACTCCTCAGCCTCTAAGAAGAAAAACAGTTTTTCACACTGATCCGGAAGTCACCTCCAGAGGGTTCAACTGAAGCCACAGGCAGAAATCATAAACAGCCTCCCATTTGGAAACCTGATC---GATCCACCCTCTCTT----TCGACAATGCTGGCCGCTCAC-AATGCGGCAGTGGCTGGGATGGGCTCTGGGG s canFam1.chrUn 1822201 276 + 91062872 ---AGAGGCCCCCTCTTTTCCCATCTTCTGCGTCTTCTCAAACAAAACCCA----ATTCTTCCTGCCTCTTAGCACTTAATGGCATTAAAAGGACCTGTCTGCCTCTGCCATGA-AAAGGAAAACAGTTTTCTATTCTCATCTGGAAGTGACCTCTGGAAGGCTTTGCTGAAGCTGCTGCCT-GCATCCCAGGGAGTCTGACACGTG-------GGTCCCAGTGCCACCCCCACCAGGGTCCAGGACACTGGGCTCAGCACTCCTGCATTGGGCACTGTGCCAGGTGCAGGG- a score=32246.0 s hg17.chr7_random 762785 233 + 778964 ACACGGAAGGCCCCCAGCTCTCAGGCCTGGTAAGAGAAAGAAAAACACGAAGACATTCCAGCCGGCCCTTCCTGCGGGGGCCGAGGGCAGAGCCC---CTGGTCTGTCTcttgctccatc--ctcacccgcccctatgaggtcagcactgctgttccgtccagtttccagataaggaaac--aagacacaaagtaacttcacccaaggtcaagaagccaggaagaggtgaagtcaggCTG s panTro1.chr6_random 67033825 233 + 67355074 ACACAGAAGGCCCCCAGCTCTCAGGCCTGGTAAGAGAAAGAAAAACACGAAGACATTCCAGCCGGCCCTTCCTGCGGGGGCCGAGGGCAGAGCCC---CTGGTCTGTCTCTTGCTCCatc--ctcacccgcccctatgaggtcagcactgctgttccgtccagtttccagataaggaaac--aagacacaaagtaacttcacccaaggtcaagaagccaggaagaggtgaagtcaggCTG s canFam1.chrUn 1822477 215 + 91062872 ACA-----------CAGTGCTCGGGGCTGCTAAGACACAG--AAACATGAAGATATGACAGTCCTCAGTCCATG-AGGCCCCAAGGACAGAACCCGTGCTGGCCAAGCGCC--CTTCATCTGCCCACTTGCTC---TGAGGTCAGAACTGTGG--CTGTCT--TGTCCAGACTAGGAAACCAGAGACACTAAGCAACCCTG-CCAAGGCC-AGCAGCTGGGAAGAGGTGAGGCCAGGCCG a score=4129.0 s hg17.chr7_random 763018 43 + 778964 AAGCCCCTATCATGAACGCTCCTCCACGGTCTGGCTTCCCTAT s panTro1.chr6_random 67034058 43 + 67355074 AAGCCCCTATCATGAACGCTCCTCCACGGTCTGGCTTCCCTAT a score=12643.0 s hg17.chr7_random 763061 133 + 778964 AGGGGCAGAGCCCTCCTCCGAGCAGAGCATGTGcctccctctcgtccacccctccctctctctgtctctctctccatcTGTGCCCTGGACTGGTCTCTAAGCTGGGGATTGAGGGCCTGAGCGTCTGGGACGG s panTro1.chr6_random 66562060 133 + 67355074 AGGGGCAGAGCCCTCCTCCGAGCAGAGCATGTGCCTCCCTCTCGTCCACCCCTCCCTCTCTCTGTCTGTCTCTCCATCTGTGCCCTGGACTGGTCTCTAAGCTGGGGATTGAGGGCCTGAGCGTCTGGGACGG a score=14311.0 s hg17.chr7_random 763194 109 + 778964 CCACCCCCAGCTCTCT---CTGGGCAGGCGTCC--------AGTAAGGAGCCCCTGCTATTTGGGTCAGGGCTGGCCAGTGGTGCTGGGTCAGGACAGTTTCCAGGAAACGGCCTGTCCC s panTro1.chr6_random 66562193 109 + 67355074 CCACCCCCAGCTCTCT---CTGGGCAGGCGTCC--------AGTAAGGAGCCCCTGCTATTTGGGTCAGGGCTGGCTGGTGGTGCTGGGTCAGGACAGTTTCCAGGAAATGGCCTGTCCC s canFam1.chrUn 1823590 109 + 91062872 CCTCCCCCCTCCCTCTGTACGGGGCAGGCCTCTGCACTGGGGACCAGGACCCAGAGAGATCTGGGTCAGGGA-----------GCAAGGTCAGGATGGTGGCCAGGGAATGGGTGGTCTT a score=1924.0 s hg17.chr7_random 763303 9 + 778964 GGGTTCCAG s panTro1.chr6_random 66562302 9 + 67355074 GGGTTCCAG s rn3.chr12 30545638 9 - 46649226 GGGCTCTCC s canFam1.chrUn 1823699 9 + 91062872 AGACCCCAG a score=32912.0 s hg17.chr7_random 763312 117 + 778964 ------TCCTACCTGG----------------CCTGTGGCTCAGAGATCACAAA---------------------------CCTTTTGAAAGCCCCCGCCCACACCACTCCCGATC-CTGATGCCTCCCCCTCCTGCAACACCTCAGTTCCTGTGC-TTCTCACTCCA-------- s panTro1.chr6_random 66562311 116 + 67355074 ------TCCCACCTGG----------------CCTGTGGCTCAGAGATCACAAA---------------------------CCTTTTGAAAGCCCCCG-CCACACCACTCCCGATC-CTGATGCCTCCCCCTCCTGCAGCACCTCAGTTCCTGTGC-TTCTCACTCCA-------- s mm5.chr5 136473718 117 + 149219885 ------TCTCACTTGG----------------CCTGTGGCTAAGAG--CACAAA---------------------------CCTTTTGAAAGTCTTTACCTAGGCCATCGCCCCTCACCAACATTCCTTCCTCCCGCAGCACCTCAGCTCTGGTGCTTTCTTAGTCTA-------- s rn3.chr12 30545647 117 - 46649226 ------CCTGGCCTCC----------------CCTGTGGCCAAGAG--GACAAA---------------------------CCTTTTGAGAGCCTTTACTTAGGCCATTGGTCCTCACCAATGTCTCTTCCTCCTCCAGCACCTCAGCTCTGGTGCTTTCTCAGTCTC-------- s canFam1.chrUn 1823708 173 + 91062872 CCACACCCTGGCCTGGACCCAAGCAGAGCCACCATGATGCTCAGGGCCTGCAAAGTGCTGGTTCCCTCCAGGTGGCCCATGGCCCTTGGAAGCTCCCACCTGAGTCACTCCTCATA-TTGGCACCTCTccttccctgggttcctcagctcttgccc--tctgacccctgtacctga a score=807.0 s hg17.chr7_random 763429 2 + 778964 CG s panTro1.chr6_random 66562427 2 + 67355074 CG s rn3.chr12 30545764 2 - 46649226 CG s canFam1.chrUn 1823881 2 + 91062872 ca a score=12958.0 s hg17.chr7_random 763431 109 + 778964 ----GATGGCTTCC---------------------GCCTCCCACAGCTGAC--TGAGCTCTCAG-ATGGAGACCACATGTTCCTTGCAGGCTCTAGTGCCCAGCCCGGGTCTGA--CGCAGAAGCTCCTCAGCACAATA s panTro1.chr6_random 66562429 130 + 67355074 ----GATGGCTTCCACCTCCCACAGCTAACTCCCTGCCTCCCACAGCTGAC--TGAGCTCTCAG-ATGGAGACCACATGTTCACTGCAGGCTCTAGTGCCCAGCCCAGGTCTGA--CGCAGAAGGTCCTCAGCACAATa s canFam1.chrUn 1823883 108 + 91062872 gtgtcctgacttcc---------------------tcctccc-cagctgactgtgagttctgagaacaaagactgcgtcatcactgca---------gcctgacacacatctgattcacagtaggtccttggtacaata a score=3210.0 s hg17.chr7_random 763540 9 + 778964 TGGATGGTt s panTro1.chr6_random 66562559 9 + 67355074 tggatggtt s rn3.chr12 30545814 9 - 46649226 TGGATGGGG s canFam1.chrUn 1823991 9 + 91062872 tggatggaa a score=25919.0 s hg17.chr7_random 763549 156 + 778964 --------------ggatgggtgggtggatgaacggatgagtg---aatggacacatggatgtacaggtgggtgagtag--acgaatgaatggatggatggatg--------------------------------gatggatggatggacaggcgggtggattgaacagg---tgggtgag--------cggatggatggatggacaaatgggtgag s panTro1.chr6_random 66562568 185 + 67355074 --------------ggatgggtgggtggatgaatggatgagtg---aatggacacatggatgtacaggtgggtgagtag--atgaatgaatgaatggatggatggatggatggacaaatgggtgagtagatgaatcgatggatggatggacaggtgagtgga-tgaacagg---tgggtgagtagatcaacggatggatggatggata---------- s mm5.chr5 136473873 161 + 149219885 --------------GGACAGGTGGGTGGATGGATGAATGGGTGTCAACTGGATGAAAGGATGGGTAGGCAAGTGGATGG--GTGAAGGGATGAAAGAATGAATG--------------------------------GATATATGATTGGATAGGTGTATGGA-----CAGGTAATGGAAGGATAGATAGACATTCGGATAAATGAACA----AGTGAG s rn3.chr12 30545823 124 - 46649226 ----------------------GGATGAATGGATGGAAGGCCA---ATTGAATGAAAGGGTGGGTAGATGGGTAGATGGCAAAGGATGAAAGAATGAATGGATT--------------------------------GATGAGTGGATGGGTGTG----TGGA-----CAGG---T---------------------GATGGGAGAAAG----GGTGAA s canFam1.chrUn 1824000 158 + 91062872 GGCTAGAGGTCAgatggtgggtggatggatgggtgggtggatg---ggtggaagagtggatgtgtggaaggaagggtag--aaggatgg-tgaatgggggagca--------------------------------gatggaagggtagaagggtgggtggt------ggg---tgggtggTGGGAACAGTGGATGGA-GGATGAG------------ a score=18114.0 s hg17.chr7_random 763705 88 + 778964 tagatgaatcgatggatggatggaCAGGTGGGTGGATGAACAGGTGGGTGAGTAGATCAACggatggatggatggat----------------ggacaggtggg s panTro1.chr6_random 66562753 94 + 67355074 ----------gatggatggatggacaggtgggtggatgAACAGGTGGGTGAGTAGATCAACggatggatggatggatggatagatggatggacggacaggtggg s mm5.chr5 136474034 80 + 149219885 TAGTTGAATGGATGGATAGGTGGACAGGTGAG----TGAGCAGATGGATGGGTTGGT----GAGTGGATGGGTTTGT----------------GGGCAGATGGG s rn3.chr12 30545947 81 - 46649226 TAGACAGACATACAGATAAATGAACACGTGAG----TGGACAGGGGGGCGAGCAGACGGATGGGTTCGTGGATGGAT----------------GG---GGTGGG a score=9556.0 s hg17.chr7_random 763793 141 + 778964 tggatgaacaggtgggtgagta-------gatcaacggatgga---tggatggatggatg-------gacagatggatggacggacaggtgggtggatgaataggtgggtgagtagaataacggatggatggatggatg----gatggatggacggacaggt s panTro1.chr6_random 66562847 141 + 67355074 tggatgaatagatgggtgagta-------gattaacggatgga---tggatggatggat-----------agatggatggacggacaggtgggtggatgaataggtgggtgagtagattaatggatggatggatggatggatagatggatggacggaCAGGT s mm5.chr5 136474114 146 + 149219885 TTGATGGATAGACTACAGAGTAAGATAGGGAAAAAAGAATAGAAAGTTGCTAGATTGATGCTTTCCACCCAGATATAAGGGAGAACAG------AGATGCAAAAGGCAGTAGGAGGCCTTCTGTGTGGATGCTCAGGCA----GGCAGA--GACAACC---- a score=2513.0 s hg17.chr7_random 763934 133 + 778964 gggtggatgAACA--GGTGTGTGAGTAGATTTGAGTAGATTAatggatggatggatggatgtaaggatggatgatggatggatggacaggtgggtggatgtacaggtgggtgagtagatcaacggatggat----ggat s mm5.chr5 136474260 123 + 149219885 CAAGGCAGGAATAATGGAGAGTAAGCAAGCATTATCAG-TGAGTTGGTGGATAGGTAGATGT----ATGGATGATG------TGGACAGGTGAATGGAT-----AGTGGGTAGATAGATATACAGATGGGTTCCAGGAT a score=6526.0 s hg17.chr7_random 764067 78 + 778964 -------ggatagatggacaggtgggtggatgaacaggtgggtga---------gtagatcaacggatggatggatggat-------------------agatggatggacgg s panTro1.chr6_random 67035165 106 + 67355074 -------GGATGGATGGACAGGTGGGTGGATGAACAGGTGTGTGACTTTTTTGAGTAGATTAatggatggatggatggatggatgtaaggatggatgatagatggatggatgg s mm5.chr5 136474383 81 + 149219885 TGGTGGTGGACAGGTGGA-ATATGGCTAGATGAAT-GGTAGGTGA----------TGGACC-ATGCACAAGTGGGAGGAC-------------------AAAGAGAAAGACGG a score=190755.0 s hg17.chr7_random 764145 2252 + 778964 aCAGGTGGGTGGATGAACAGGTGTGTGAGTAGATTTGAGTAGATTAatgga----tggatggatggacaggtgggtggatgtacaagtgggtgggtggatggatagatggatggatggacaggtgggtggatgaacaggtgtgtgagtagatttgagtagattagtggatggatggatggatggatgtaaggatggatgatagatggatggatggacagctgggtggatgaacaagtgggtgggtggatggatagatggatggatggacaggtggatggaccgacagatgatggatgggtggctattagaggagaggaaggaagggaaaagtgaatgaaaaaacggatgcctggaaggatgaatggaaggatggCACTGCCTCTTTAAGGGCATTGCAACAAATATCAAAAGCTGCTGGAGTGGCCACCCTTGGGACCCTCAGTTCCACATTTAGGAACTTGAAGAAACAACGGGATGACTATGAAAAGATGTAAAAATATTGTAATAATATTCACCGAAGCACTGCCAGCAACAGAGGCTTTATTAAATAAACGACACTGAAAAGATGTGTGTGTGTAATAATATTCACCGAAGCACTGTCAGCAACAGAGGCTTTATTAAATAAACGACAATGAAAAGATGTGTGTGTGTAATAATATTCACCGAAGCACTGTcagcaatacaggctttattaaataaatcacagtccttctcaacaacctaacaccgtgtggtcattaaaaatggtggtgtagatacatgtaacaaggaataaaggtgttcacagtgttgccagtgaaaatagggtgtcgatgaaactgtacaatttaaaaacacaaccataaagtaaataacctagaggctatgcaccgtaaggctaatagcaactgtggggtggagagggggtggggttggggtcattttcatgtgtttttttctttttcttttgttttttttttttt----gattacttgtactgacgtgtattttctaattttctataattaCATTGTAAATCTGTGTAATTTTAAAAATGAGGCCGTTCATCATTGGAGAAAACACGACACGTACGCTTAAGGGCAGACTTAAGGCTCTTAACATTTTTAAAGCAACCAAAAGAGGCAAAATGTAGACTTTAAAACACAAAAATGTGCTTTTCTGAGTGTGGCACAGACTCCAAGCCCACAACGTCTGAGGAAGCGTACGGGATCAGAACCAGCAGCTCCGTTCACAGCCAAACTCGCCTTCAAAAGGCAAGGAGATGGCGCGCCAAGCTCAGCCCCTGAAATCACACACGCGGGGTTGAACGTGAGTAACTCAGCCCATCGTTCCGCACTGTGAATCTGCTCCAATACCTGCAGAGACAGGTCCAGCTCCCACTACGAGGGCCCACCGACCAACACGGTACACCGAGGGTGAAAAAGCCACGACCAGGCCCACCTGGAAAACACCATCAGCTCCTAGAAATGCCACTTCCTTCCTCCTCCCGCCGCTCCGGGCCTCCCGAGCCAAGACAAGCGCAGGTTGGGACTTGCACGGGAAAGCTCACCTGAGAATGTTTCCAGAAACCCCTCCCCAGCCTGCAGAGACCTCTCCCGGCCCCAGGACAGGGAAGCCTGCGGAGCCAAGAGGGTGCAGTGCTGGGAGGTCCCCGCAGGGGCAAGCAGGGCTGCCACCAAGCGGGTGGGAGACACCCAAGGACTCGTCCACCACCCAGGGAACCGGACTGTGAGGTTCAGGTCAGCATGGAGGGCGGGAGGCGTGGCGCCCACAGAGGGGAGGGGAGCCAGGCCCAGATGACAGACGCCTGCAGACTCCACGCCCCGCACGCCCGACCAGGACAGGCCAACGCAGGGCTGGGCACTTCTTCGGACTCACAGGAAGCCTCTGTCCATAGTCTGGCTACATCTGCCCAACCTCAGCCACTCAGGACTGTC--TACACAAAACACTCAGCAGCATATACGACAGGATGCGCAGAATGACAGATTCAACCTGCCTCATCAGCTCCAAGATGGTGGAACACGGCTAAGACCCAGGTCTTCTGACAAAAGGCTGGGTTGAATGCCTTTCACCTGAGAGaacgccccgtttacatcccctcctctgaacttcaccgccacaggccccattactgccccacttcacagacaaggaagctgaggcttaggaagctgacatgGGCCAGATGTGGTGggtggctcatgcctgtcatcccagcactttgggagaccgggcaccataaggaggtgaaaggatcg s panTro1.chr6_random 67035271 2154 + 67355074 acaggtgggtggatgaacaagtgggtgggtggat--------------ggacagatggatggatggacagatgggtggatgaacaagtgggtgggtggatggacagatggatggatggacagatgggtggatgAACAGGTGTGTGAGTAGATTTGAGTAGATTA----atggatggatggatggatgtaaggatggatgatagatggatggatggacagctgggtggatgaacaagtgggtgggtggatggatagatggatggatggacaggtgggtggaccgacagatgatggatgggtggCTATTAGAGGAGAGGAAGGAAGGGAAAAGTGAATGAAAAAACGGATGCCTGGAAGGATGAATGGAAGGATGGCACTGCCTCTTTAAGGGCATTGCAACAAATATCAAAAGCTGTTGGAGTGGCCACCCTTGGGACCCTCAGTTCCACATTTAGGAACTTGAAGAAACAATGGGATGACTATGAAAAGATGTAAAAATATTGTAATA--------------------------------------------------------------------------ATATTCACCGAAGCACTGTCAGCAACAGAGACTTTATTAAATAAACGACAATGAAAAGATGTGTGTGTGTAATAATATTCACCAAAGCACTATCAGCAATACAGGCTTTATTAAATAAATCACAGTCCTTCTCAACAACCTAACACTGTGTGGTCATTAAAAATGGTGGTGTAGATACATGTAACAAGGAATAAAGGTGTTCACAGTGTTGCCAG----------------ATGAAACTGTACAATTTAAAAACACAACCATAAAGTAAATAACCTAGAGGCTATGCACCGTAAGGCTAATAGCAACTGTGGGGTGGAGAGGGGGTGGGGTTGGGGTCATTTTCATGTGtttttttctttttcttttctttttttttttttttttGATTACTTGTACTGACGTGTATTTTCTAATTTTCTATAATTACATTGTAAATCTGCGTAATTTTAAAAATGAGGCCGTTCATCATTGGAGAAAACACGACACGTACGCTTAAGGGCAGACTTAAGGCTCTTAACATTTTTAAAGCAACCGAAAGAGGCAAAATGTAGACTTTAAAACACAAAAATGTGCTTTTCTGAGTGTGGCACAGACTCCAAGCCCACAACGCCTAAGGAAGCGTACGGGATCGGAACCAGCAGCTCTGTTCACAGCCAAACTCGCCTTCAAAAGGCAAGGAGACGGCACGCCAAGCTCAGCCCCTGAAATCACACACGCGGGGTTGAACGTGAGTAACTCAGCCCATCGTTCTGCGCTGTGAATCCACTCCAATACCTGCAGAGACAGGTCCAGCTCCCACTACGAGGGCCCACCGACCAACATGGTACACCGAGGATGAAAAAGCCACGACCAGGCCCGCCTGGAAAACACCATCAGCTCCTAGAAATGCCACTTCCTTCCTCCTCCAGCCGCTCCGGGCCTCCCGAGCCAAGACAAGCGCAGGTTGGGACTTGCACGGGAATGCTCACCTGAGAATGTTTCCAGAAACCCCTCCCCAGCCTGCAGAGACCTCTCCTGGCCCCAGGACAGGGAGGCCTGCAGAGCCACGAGGGTGCAGTGCTGTGAGGTCCCCGCAGGGGCAAGCAGGGCTGCCACCAAGCGGGTGGGAGACACCCAAGGACTCGTCCACCACCCAGGGAACCGGACTGTGAGGTTCAGGTCAGCATGGAGGGCGGGAGGCGCGGCGCCCCAAGAGGGGAGGGGAGCCAGGCCCAGATGACAGACGCCTGCAGACTCTGCACCCCGCACACACGACCAGGACAGGCCAACGCAGGGCTGGGCACTTCTTCGGACTCACAGGAAGCCTCTGTCCATAGTCCGGCTACATCTGCCCAACCTCAGCCACTCAGGACTGTCTGTACACAAAACACTCAGCAGCATATATGACAGGATGCGCAGAATGACAGATTCAACCTGCCTCATCAGCTCCAAGACGGTGGAACACGGCTAAGACCCAGGTCTTCTGAGAAAAGGCTGGGTTGAATGCCTTTCACCTGAGAGAACGCCCCGTTTACATCCCCTCCTCTCAACTTCACCACCACaggccccattactgccccacttcacagacaaggaagctgaggcttaggaagctgacgtgGGCCAGATGTGGTGggtggctcatgcctgtcatcccagcactttgggagaccgggcaccataaggaggtgaaaggatcg a score=24508.0 s hg17.chr7_random 767580 339 + 778964 ggcaggagaatggcatgaacccgggaggcagagcttgcagtgagccgagatcgcgccactgcactccagcctgggctacagagcaagactccatcaaaaaaaaaaaaaaaa---agaaagcaagaaaggaaggaagaaagggagggagggaaagggagagagaaagagaaaaaaggaagagagaaagagagaaaaaaaggaaga----aagaggcaga--------gaaagaaagaaaaataaaaaaagaaacagaaagagagaaagagggagagagaaagaaaaaggaagaaagagagagagagagaGAGAAAGCAGCTGAGGCTGAGGCTGAGCCCAGGCAGGGGCTGTGCT s panTro1.chr6_random 67038412 336 + 67355074 ggcaggagaatggcgagcacccgggaggcagagcttgcagtgagcggagatcgcgccactgcactccagcctgggctacagagcaagactccatcaaaaaaaaaaaaaaaagaaagaaagcaagaaaggaaggaagaaaggaagaaag--aaagggagggagaga-------aaggaagagagaaagagagaaaaaaaggaagagagaaagaggcagaaagagagagaaagaaagaaaaa-gaaaaaagaaagagaaagagaga--gagggagagggaaagaaaaaggaagaaagagagagagaga------aagCAGCTGAGGCTGAGGCTGAGCCCAGGCAGGGGCTGTGCT a score=97886.0 s hg17.chr7_random 767919 889 + 778964 CTCACCACTGCCGAGACCCTCCCAGGCCCAGCCCTGCCCGC------GGGTGCACACGCAGAACACACTGGG----TGGGTCTCAGCCCCTCTTGGCTGCAGGTACAGGCCCTGTCTGGTGTAGTGGGTCCTCGCCCCAGGTCCTGGCCCCCTGTGCTGGAGGCAGCCCCCTGGCTCTCACTGACAAAACGAGGTCACTCC-GGACAGACTCGCAGGGCCTGGAGAGGTCAGAG---ATCTCCATCAACCACAGACCACCGCAGATGGGGGACCTTCCTTCCCCCTCCACCTGCCCAGAGTCACG-CTTCCACCTCTGGCCAAACGCAGCCACCACCTGTGCCC-ACCAGGCCTGCCTGGCTCACTTTGTCCTCACTGATCCGGGGGACCAGGGGACCAGCTGGGAAACAGTGATGGAGCCCAGGGTCTCTCCGGAGCTGCGTCCTGCCAGCCGGCGGGGCTCATCCAAGCTAGGCAGGCCTGGCTTCCTCAGGCTGTGGTCCCAGAAGCACGCTCCACCCAGTTCTGCTGTGGCAGCCATCGCACAGCGGCTCCTCACCGGCCACCAGACCCCAGTGCCACGCACCGCTTTGGCTGAGGGTCCGTCGGCCTCCCTCCCTGCTGACG-GCTACAACTTCACAGCCCAGC-CTTTTCCCTCCACACCCAGCTCTAAGGTGTGG----TTCCCAGTCATGCCCGCGGCATCGATGTTTTCAAA-GACACATTCAGGACAAGATCTGACCCTTGAAGCCAAAA-GCCATCCATGAATCCCAACCTCATGTATTTTTGGGAAAAAAAGTACAAATGGGGTGAAGCGCCTCGGGCCCTTTATTCTCCATCCAATCAAA----ACAGCCAAGTGCTCATCCCGGGTAATTTAAACAACAAGGAAAGTTTGGGGTTTTCTTGTT s panTro1.chr6_random 67038748 890 + 67355074 CTCACCACTGCCGAGACCCTCCCAGGCCCAGCCCTGCCCGC------GGATGCACACGCAGAACACACTGGG----TGGGTCTCAGCCCCTCTTGGCTGCAGGTACAGGCCCTGTCTGGTGTAGTGGGTCCTCGCCCCAGGTCCTGGCCCCCTGTGCTGGAGGCAGCCCCCTGGCTCTCACTGGCAAAACGAGGTCACTCC-GGACCGACTCGCAAGGCCTGGAGAGGTCAGAG---ATCTCCATCAACCACAGACCACCGCAGGTGGGGGACCTTCCTTCCCCCTCCACCTGCCCAGAGTCACG-CTTCCACCTCTGGCCAAACGCAGCCACCACCTGTGCCC-ACCAGGCCTGCCTGGCTCACTTTGTCCTCACTGATCTGGGGGACCAGGGGACCAGCTGGGAAACAGTGACGGAGCCCAGGGTCTCTCCGGAGCCGCGTCCTGCCAGCCAGCGGGGCTCATCCAAGCTAGGCAGGCCTGGCTTCCTCAGGCTGTGGTCCCAGGAGCACGCTCCACCCAGTTCTGCTGTGGCAGCCATCGCACAGTGGCTCCTCACCGGCCACCAGACCCCAGTGCCGCGCACTGCTTTGGCTGAGGGTCTGTCGGCCTCCCTCCCTGCTGACG-GCTACAACTTCACAGCCCAGC-CTTTTCCCTCCACACCCAGCTCTAAGGTGTGG----TTCCCAGTCGTGCCCGCGGCATCGACGTTTTCAAAAGATACATTCAGGACAAGATCTGACCCTTGAAGCCAAAA-GCCACCCATGAATCCCAACCTCATGTATTTTTGGGAAAAAAAGTACAAATGGGGTGAAGCGCCTCGGGCCCTTTATTCCCCATCCAATCAAA----ACAGCCAAGTGCTCATCCCGGGTAATTTAAACAACAAGGAAAGTTTGGGGTTTTCTTGTT s canFam1.chrUn 1824469 719 + 91062872 CTGACCACT-------CCCTCAAGGTCCCATTCATTCTTGCCACAGAAGGTGCACA-ACAGAACACACCAGGGTGTGGGGTCTCTGCTCTCTCTGGCCATGCATCCAAGCCCTGACTTATG-GGTGGGTC--CACACTGAGGCATGG-CCTCTGCAAAGGAGGCAG-CCCCTGGCTCTTGCTAGCAGGACCAG---ACTCCTGGAGATACTC-TAGGGC--AGGAAGGCTGGAGGGTACCTACACTTACCA----------------GATGACTTTGTGT-------CAATGGCAGAGCGTCACATCCCCTGCCCTTGAGCACACCTGGCTGTCACTTGAGCCCTGCCAG--CTGACTAGTTCCCTGGGTCCTCTGTGACCTGGTGGTCT----------------------------TCCCAGAG-------AAAGTTGGGTGCTGCCGACCAG-GGGTCTCATCCTG-----------------------------------AGAGCTACACTC--CCTGGTT---------------------------------CCAGCAATGAGGCCACAG------GCACCAACTGGGCT---------------------CCTGGAGACATGTGTCACCTTCACAGCCTAGAGCCCTTCCCTTCCTGCCTGACTCCCATGGGGGGAGGCTTCCTGACTATTCACTTAG-ATTCATGTTTTCAAA-GACACATTGAAAATGAGGTGTCACCCTTGAGGTCAGAACCCCACCAACGAGTCTCAGCTTAGTGTATTTCCAGGAAAAACAATGCAA--TGTTTGTTTCATCTTGGGGAGGCT-CTCCCCACCAAATAAAGTGTTATAGTGAA-TCCTCATCACA---------------CAGGAAAGTTTGGGGTTTGTTTGTT a score=136596.0 s hg17.chr7_random 768808 1495 + 778964 TATTTTAAAATCTAAACCCCAACACCCAAGTGCtttttttttttttttttttt-----gagacagagtctcgccctgtcgaccaggctggagtataatggcacgatcccagctcactgcaacctccacctcccaggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaagcacacactgccatgcccagctaatttttgtgttttcagtagagacaggggtttcaccatgttggccaggctggtctcgaactcctgacctcatgatccacctgccttggcctcccaaagtgctgggattacaggtgtgaggcaccacgcAGGACCAAGTGCCttttttttttttttttttttaaagagaccgagtctcactctgccacccaggctggagtgcagtggtagcatcacagctcacttcagccttgaccttctgagctcaagcgatcctcctgccttagcctcccaagcagatgggaccaccagcccgaaccaccacccccaactaaCGAAGTGCCATTTTAAAAGCAAGCTAATTTTTGGTGTGCAAATGCATGTGTTGGGCACAACCTATTGCTTAGTCACTTGCTCAGACCCACACTAACATCAGGCCAGCTGGTCAAGTCCCACCCAGCCCTGTAGGTTAAGAACAGTCACACTGGGTGATGGGTCCTTGTCACCGACTGTCACCCTGGTCCATTCCAGATACTCTCCCGGCCCCAGCTTTCCATCTGTTTCCCCCGTCCTGGCAGGAGGCAGAGCCTGGGCCTGTGAACCCAAGGGGTGGCAGCAGGCACTAGGCCCCTCCCGGAGCAGAGCCCAGGACGTGGCAGGTCGGACGGAAAGCAAACCCCTCCTGGGCCCCGCGTAGCACTCACCCAGCTGGAACTCGCAGCCTCTATCCGGGCAAAGGGCTGTATGGGAAAGCCTAGACACCCCGCCCCTGCACAGACACCTCCAGTTTCTCTTAAAACACAGACTCTTGAGCTGTGTTCACTTTCCCCAAGCCTGGAGGCCTCCAGGGAAGCAGAGGCCCCACCCACTTTCCCCCACCCTCCGCCTGGGACCCCCTCACCGCCCCCACCAAACCCAGGACCAGTGCAGGCTCCTCCCCACCAGTGGTAAGTGCCGGAGTGAGGGTGGGAGAGGTGGAGGCAGGGCAAGGTCCAGGAACACAGCCCGCACACCCATATCCCTGCACTCAGCTCACAGGCAGCCACAGCACTCAGACTGGGTCCTGCTGGGGCCACAGGGCAGCAAACCCCGCCGTTCCCGACAGGCCCACAGACCATGCATTTGGCAACACCTGTGTTTCGTGGGACATCCTATTCCAACATCTTTTCTTTAAACCCCAGATGTAAATATGGAGCACTCAGTTCATGCCGCTCTGTGATCTGTTCTTGTTTTGCCTATACATTTATTCCTCTCTTCCCATAGCCCTCTCGGTCTGTGGGCAATTGCTATAAGATACTTGAGGTCTCCCCTCTCGTT s panTro1.chr6_random 67039638 1499 + 67355074 TATTTTAAAATCTAAACCCCAACACCCAAGTGCtttttttttttttttttttttttttgagacagagtctcgccctgtcgaccaggctggagtataatggcacgatcctggctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcgcacgctgccatgcccagctaatttttgtgttttcagtagagacaggggtttcaccatgttggccaggctggtctcgaactcctgacctcatgatccacctgccttggcctcccaaagtgctgagattacaggtgtgagccaccgcgcAGGACCAAGTGCCtttttttttttttcttttt-aaagagaccgagtctcactctgccacccaggctggagtgcagtggtagcatcacagctcacttcagcctcgaccttccgagctcaagcgatcctcctgcctcagcctcccaagtagatgggaccaccagcccgaaccaccacccccaactaaCCAAGTGCCATTTTAAAAGCAAGCTAATTTTTGGTGTGCAAATAAATGTGTTGGGCACAACCTATTGCTTAGTCACTTGCTCAGACCCACACTAACATCAGGCCAGCTGGTCAAGTCCCACCCAGCCCTGTAGGTTAAGAACAGTCACACTGGGTGATGCGTCCTTGTCACCGACTGTCACCCTGGTCCATTCCAGATGCTCTCCTGGCCCCAGCTTTCCATCTGCTTCCCCCGTCCTGGCAGGAAGCAGAGCCTGGGCCTGTGAACCCAAGGGGTGGCAGCAGGCACTAGGCCCCTCCCGGAGCAGAGCCCAGGACGTGGCAGGTCGGACGGAAAGCAAACCCCTCCTGGGCCCCACGTAGTGCTCACCCAGCTGGAACTCGCAGCCTCTATCCGGGCAAAGGGCTGTATGGGAAAGCCTAGACACCCCGCCCCTGCACAGACACCTCCAGTTTCTCTTAAAACACAGACTCTTGAGCTGTGTTCACTTTCCCAAAGCCTGGAGGTCTCCAGGGAAGCAGAGGCCCCACCCACTTTCCCCCACCCTCCGCCTGGGACCCCCTCACCGCCCCCACCCAACCCAGGACCAGTGCAGGCTCCTCCCCACCAGTGGTAAGTGCCGGAGTGAGGGTGGGAGAGGTGGAGGCAGGGCAAGGTCCAGGAACACAGCCCGCAGACCCATATCCCTGCACTCAGCTCACAGGCGGCCACAACACTCAGACTGGGTCCTGCTGGGGCCACAGGGCAGCAAACCCCGCTGTTCCCGACAGGCCCACAGGCCATGCATTTGGCAACACCTGTGTTTCGTGGGACATCCTATTCCAGCATCTTTTCTTTAAACCTCAGATGTAAATATGGAGCCCTCAGTTCATGACGCTCTGTGATCTGTTCTTGTTTTGCCTATACATTTATTCCTCTCTTCCCATAGCCCTCTCGGTCTGTGGGCAATTGCTATAAGATACTTGAGGTATCCCCTCTCATT a score=16712.0 s hg17.chr7_random 770303 104 + 778964 TGTATGTTTTCTCTTAAAACATAGAATCTTAAGCTATGTGCATTTAACCAAAAAATGGTATCCTGCTGCAGATTTCATGCTGTTTCTTCTTTTTCTTCAAGGAG s panTro1.chr6_random 67041137 104 + 67355074 TGTATGTTTTCTCTTAAAACATAGAATCTTAAGCTATGTGCATTTAACCAAAAAATGGTATCCTGCTGCAGATTTCATGCTGTTTCTTCTTTTTCTTCAAGGAG s rn3.chr1 47748936 104 - 268121971 TGTACATTTCCCCCTCAGGTGTTGTATTTAAAAAGAAGTATATTTAATTTAAAAATGTAATACAGTTGAATATATCATTTTTTTTCTTTTCTTTTTTTAAGGAG a score=217001.0 s hg17.chr7_random 770407 2323 + 778964 TCCACATACTCTAGATCTACCCACGTCACCACATTGCCTGACACGTTGGGGCTGCGGCTTTGAACTGCCGTTTTgtttgcatttccatttccctgatctctaagctctgagctgctcttcaagggcttctcctctggttgtgtttcctcttctgtaaacttcctgttcatatcctgtgcccatcttgatagaagggttggtaccttctttcctgctgatttgcagaaattccttgtgtgttttagataccggttgcttgtcgggtttagatattgcaactatcttcttacacgcagtcacctgttaactttttcatgatgtccttaattaggtagacatctttcatctgatgtaacctcttttttgctttatggtttgtgctttgtgggttttgtttaagaaagtgtttccccacaaccaagtaatgaaatactctccGACATGTCTGCCTGGGCTGCCATCACAGAGCACCACAGACTGGCAGCAAGACCCTGTCTTGAAAaaagtgaggtcctactggagtagggttggccctaactcaatatgattggtgtccttataaaaagaggagacttggacacacacagggaaaacacagtgtccacgcagagcgaagagtcggacgaaagcacagcagggaggcaacacggcacctacaagccaaggagaggccaggccagatccccacacacagccctcagggggaaccagccctgcccacatcttgagcttggacttctggcctccagaagcatgagacgcttgatcactgttgttaaggccaagtttgtccttctgttatggcagccctagaaactaacacagtgttttacgcacagttgctcatttaattctcacaacaaccttgtggcatatatgatcatcactccccttatcctcacatacaagtgggagcaggacagaagcacagagaggttaaggaacctgcccaaggtcacacagctaaggaatggtggtgctgggattcaaaaccgggtgatctggctccagagtccttgtcttaaccactgcactaaactACCTCTTGCATCTATTAAATATGGAGCTCCCATGTGTGCCTGCACCTCCTCTCAGCTCTCGGCCCCACGCCATTGTTCTGCCGTCCCTTCCTGCAGGGCACCTGGCTCCATTTATGATCAAGGCCTCCTGCTGAGCCTCAGCTCTTGGTAGGAGAAGTCCCTCTTCTTTGTGCTTCTGTTTCAAAGATGACTTAGTTATTTGCAAATTTTTATTCTTTCCTTTCCTTTTTCTTTCTGTTGTtttgttttttgttttgttgtttgttttttagagacaaggtctcactctgtcacccaggctagagtgcagtggtgcgatcatagctcactgtagcctcgaactcctgggctcaagtgatcctcctgcctcagcctcctgagtagctgggcctacaggcacatgccatcatacccagctactttttttttttttttttttagagatggggtttctctgtgttgcccaggctggtctcaaactcctgggctcaaacaatcctcccacctcagcctcccaaagtgctgggattacaggcataagccaccgcacccagctCATTCACATTTCCGAATGTGTTTACTGCCTCACAATATTCCAGCTGCAatttgaagtggagctgctttgaaggtagagattaatgtgagggagaaatgacatcatcacgttgagtcattccacccaagaatacagaccgcctctccctattcagatcgtgttttatgtccttATAGAGGTTTAAAACTTCCTCCCTAGAGTCTTCTGTAATCTGTTGTCAAGCACATTCCACTTCTCAGTGGCTGTTGCCCTCATGAATGGCATCCTTTCAAATTCTATTCTCCAGTTACTCCTCATCTGTGTCTCTTTTCTCATTCCCTGCACCCACCCAGCCCCTTGGGCTCTTTTTTTTCTCTCTTTCTTTCTGTTGAGACAGATTTAATATCTTCATTGTGATGGGAAGGAATCCGTATTTTTAAATTTTCTTTAAATTGACAAAGAAAAATTGTGTATATTTATTTATGGATTCCTTGGGCTTCTTAATGAtgatttttgtaagttgagcttgcaccaaccctgctgaacactcataagaatgtaagagttgttctgtgtattctatgctggtttccatagacatgatcaaattcatcttctctctacccttccaattaggactcctcttatttttctttctttatagcattgccgggacctcccaagcacagttaaaccatgaaagccatcagagcctcattgtggtccctcccttaaagagcatgtagcc s panTro1.chr6_random 67041241 2319 + 67355074 TCCACATACTCTAGATCTACCCACGTCACCACATTGCCTGACACGTTGGGGCTGCAGCTTTGAACTGCCGTTTTgtttgcatttccatttccctgatctctaagctctgagctgctcttcaagggcttctcctctggttgtgtttcctcttctgtaaacttcctgttcatatcctgtgcccatcttgatagaagggttggtaccttctttcctgctgatttgcagaaattccttgtgtgttttagataccggttgcttgtcgggtttagatattgcaactatcttcttacacgcagtcacctgttaactttttcatgatgtccttaattaggtagacatctttcatctgatgtaacctcttttttgctttatggtttgtgctttgtgggttttgtttaagaaagtgtttccccacaaccaagtaatgaaatactctccGACATGTCTGCCTGGGCTGCCATCACAGAGCACCACAGACTGGCAGCAAGACCCTGTCTTGAAAaaagtgagctcctactggagtagggttggccctaactcaatatgattggtgtccttataaaaagaggagacttggacacacacagggaaaacacagtgtccacgcagagcgaagagtcggacgaaagcacagcaggaaggcaacacggcacctacaagccaaggagaggccaggccagatccccacacacagccctcagggggaaccagccctgcccacatcttgagcttggacttctggcctccagaagcatgagacgcttgatcactgttgttaaggccaagtttgtccttctgttatggcagccctagaaactaacacagtgttttacgcacagttgctcatttaattctcacaacaaccttgtggcatatgtgatcatcactccccttatcctcacatacaagtgggagcaggacagaagcacagagaggttaaggaacctgcccaaggtcacacagctaaggaatggtggtgctgggattcaaaaccaggtgatctggctccagagtccttgtcttaaccactgcactaaactACCTCTTGCATCTATTAAATATGGAGCTCCCATGTGTGCCTGCACCTCCTCTCAGCTCTCAGCCCCACGACATTGTTCTGCCGTCCCTTCCTGCAGGGCACCTGGCTCCATTTATGATCAAGGCCTCCTGCTGAGCCTCAGCTCTTGGTAGGAGAAGTCCCTCTTCTTTGTGCTTCTGTTTCAAAGATGACTTAGTTATTTGCAAATTTTTATTCTTTCCTTTCCTTTTTCTTTTTGTTGTtttgttttttgttttgttgtttgttttttagagacaaggtctcactctgtcacccaggctagagtgcagtggtgcgatcatagctcactgtagcctcgaattcctgggctcaagtgatcctcctgcctcagcctcctgagtagctgggcctacaggcacatgccatcatatccagctacttttttttttttttt----agagatggggtttctctgtgttgcccaggctggtctcaaactcctgggctcaaacaatcctcccacctcagcctcccaaagtgctgggattacaggcataagccaccgcacccagctCATTCACATTTCCGAATGTGTTTACTGCCTCACAATATTCCAGCTGCAatttgaagtggagctgctttgaaggtagagattaatgtgagggagaaatgacatcatcatgttgagtcattccacccaagaatacagaccgcctctccctattcagatcgtgttttatgtccttATAGAGGTTTAAAACTTTCTCCCTAGAGTCTTCTGTAATCTGTTGTCAAGCACATTCCACTTCTCAGTGGCTGTTGCCCTCATGAATGGCATCCTTTCAAATTCTGTTCTCCAGTTACTCCTCACCTGTGTCTCTTTTCTCATTCCCTGCACCCACCCAGCCCCTTGGGCTCTTTTTTTTCTCTCTTTCTTTCTGCTGAGACAGATTTAATATCTTCATTGTGATGGGAAGGAATCCATATTTTTAAATTTTCTTTAAATTGACAAAGAAAAATTGTGTATATTTATTTATGGATCCCTTGGGCTTCTTAATGAtgatttttgtaagttgagcttgcaccaaccctgctgaacactcataagaatgtaagagttgttctgtgtattctatgctggtttccatagacatgatcaaattgatcttctctcttcccttccaattatgactcctcttatttttctttctttatagcattgccgggacctcccaagcacagttaaaccatgaaagccatcagagcctcattgtggtccctcccttaaagagcatgtagcc a score=34855.0 s hg17.chr7_random 772730 224 + 778964 aaagattctc---cattagcatgtttgctctgtgttgggtatgtatgacctttaccaagttaagaagtgaccctattcttagtttgctaagaatttatgcaatagttgttgagctttgtcaaaaccttttccaacacctatgtgacatgtcacat--gctctttctctacaatctactaatatggtgatttacatggatagagtattctgaggttgaaccatccttgaa s panTro1.chr6_random 67043560 224 + 67355074 aaagattctc---cattagcatgtttgctctgtgttgggtatgtatgacctttaccaagttaagaagtggccctattcttagtttgccaagaatttatgcaatagttgttgagctttgtcaaaaccttttccaacacctatgtgacatgtcacat--gccctttctctacaatctactaacatggtgatttacatggatagagtattctgaggttgaaccatccttgaa s canFam1.chrUn 1828045 215 + 91062872 AAACATTCCCTAACACCAGGATGTTTGCTCAGTGACAGGTGCATGCGACCTTTACTAAATTACATTTCCCTTCTAGGCTTAGTTTGGTAAGAATTTTTATAGTAGTTGCTGATTGTTATCAGGCTCTTTTTCAACATGTACATGACATACCATACCGATGTTTTTCCTGTGGTCTATTAATGTGG--------------ACAGCATTCTGAGCTGGAGCTGTCCTTGAA a score=194989.0 s hg17.chr7_random 772954 1464 + 778964 ttctggatcatctccacctgatcacagt----------------------------------------------------------------ACAGTAcatacaatgatcta-------------------------------------------------------------gcagcttcctcttgttttctattttctgtagcaatttgagaagtaagaatagacagtttgctgatgtttgaaagaactcaaccagtgaaaccatcagaaagaaccctttgggaggaaaggtctttggttaccatttcaacttacttaatgcttctagatctcttcaggttttctatttattcatgtgccaatgttgatggTattttcaaaatcatctcccaatatttaaaaatttacaaaatt-cataaaatccaaattgttggctttcctttgaaaaaagaaaataaaaagaaaagtctgacaacacagggaccttgtactcccaaagcaagaattcagctcacccccactttggaaggagcatgaccatctccaatctgccacaattcccaAGGACTCCACGTTTTCCACTTAATTCCTGAACCCCCAGGATCCCGAGTTTGCAACCCTTCCCTAAGGGGCTCACTATTGAGCAGTGGTGACAGATGCTTGTGTGGGGTGATGTCACAGCAGGTGGGGTCATCCCCATGACAGATGCTTCCT-----GGCCATCACCTCATCATGTGTGGTACAAGTCCCAACCTTGCCTGGAGGGACCCAGGGGACTGAGTTTCTGAAGAGTTAAGCcatctgtaaaatgggcaca--gtaacactctcagcctctaaagcagcagggaggactca---gtgatcatgaggcttgtgaagcactcagcagaatAAGGGGCTCCCACGGTCAGCAGCTGCTGCCATA---GTGTCTGCTGGTTCCAAACCCCATGCA---------------GCCGCTCCCCCAGTGCTGCTAGAAGGGTCACACATGTCCCAGAATCCCCCAGGAGTGATGCAAATGGAGCGGCCCATGCCCCGATCTCAGCCAGTCTCTTCA-CCACTCTGGCTTTTTTATTCCTTTTTGTTGGCTTACATTGCTAATATATTGTGGAACTGCAGCCAGAGGTGGCCTGACAGGTAAACACCTCCCCGCCCTCACCCATGCAAAGAAACCTG-CTGAAGCAAACAGGTTCAGCCAGTTCTCAGAGCCGAGGCCA-CCTAAGGGGGACAA--CAGAAAGGATGGGCACCCA-CAGCCCCTCAAAGCTGCACCTCAGACCCGAGCACCAGG-TGCCTGCCAAGGCTGGGCATGCATTCAGAAGAGCAGCGAGGTGAGGGGTGGCAGCAAGGACCCCCGCGCCACACAGGGCCTCCCGCTCACTCCTCCCGCTCCAACAATC-TGCATTTCTGTATGTTAGAAATGTCTGCCTGAGGCTAAAAGAAATAAAGAATTTTTGTGACTTTTAAACAAAAGCATCATGACATTGACCTGGGAGAACATGAATGTGCTAGGATCGTATCCAGTAATAAAGAAGGCAAACTGAGTTATTAGCACTTCCAACATGTCTGATCTTTAGTTTTTTTCAACTCTCTATTTTG s panTro1.chr6_random 67043784 1464 + 67355074 ttctggataatctccacctgatcacagt----------------------------------------------------------------ACAGTAcatacaatgatcta-------------------------------------------------------------gcagcttcctcttgttttctattttctgtagcaatttgagaagtaagaatagacagtttgctgatgtttgaaagaactcaaccagtgaaaccatcagaaagaaccctttgggaggaaaggtctttggttaccatttcaacttacttaatgcttctagatctcttcaggttttctatttattcatgtgccaatgttgatggTattttcaaaatcatctcccaacatttaaaaatttacaaaatt-cataaaatccaaattgttggctttcctttgaaaaaagaaaataaaaagaaaagtctgacaacacagggaccttgtactcccaaagcaagaattcagctcacccccactttggaaggagcatgaccatctccaatctgccacaattcccaAGGACTCCACGTTTTCCACTTAATTCCTGAACCCCCAGGATCCCGAGTTTGCAACCCTTCCCTAAGGGGCTCACTATTGAGCAGCGGTGACAGATGCTTGTGTGGGGTGATGTCACAGCAGGTGGGGTCATCCCCATGACAGATGCTTCCT-----GGCCATCACCTCATCATGTCTGGTACAAGTCCCAACCTTGCCTGGAGGGACCCAGGGGACTGAGTTTCTGAAGAGTTAAGCcatctgtaaaatgggcaca--gtaacactctcagcctctaaagcagcggggagaactca---gtgatcatgaggcttgtgaagcactcagcagaatAAGGGGCTCCCACGGTCAGCAGCCGCTGCCATA---GTCTCTGCTGGTTCCAAACCCCGTGCA---------------GCCGCTCCCCCAGTGCTGCTAGAAAGGTCACACATTCTCCAGAATCCCCCAGGAGTGATGCAAATGGAGCGGCCCATGCCCCGATCTCAGCCAGTCTCTTCA-CCACTCTGGCTTTTTTATTCCTTTTTGTTGGCTTACATTGCTAATATATTGTGGAACTGCAGCCAGAGGTGGCCTGACAGGTAAACACCTCCCTGCCCTCACTCATGCAAAGAAACCTGGCTGAAGCAAACAGGTTCAGCCAGTTCTCAGAGCCGAGGCCA-CCTAAGGGGGACAA--CAGAAAG-ATGGGCACCCA-CAGCCCCTCAAAGCTGCACCTCAGACCCGAGCACCAGG-TGCCTGCCAAGGCTGGGCAGGCATTCAGAAGAGCAGCGAGGTGAGGGGTGGCAGCAAGGACCCCCGCGCCACACAAGGCCTCCCGCTCACTCCTCCCGCTCCAACAATC-TGCATTTCTGTATGTTAGAAATGTCTGCCTGAGGCTAAAAGAAATAAAGAATTTTTGTGACTTTTAAACAAAAGCATCATGACATTGACCTGGGAGAACATGAATGTGCTAGGATCGTATCCTGTAATAAAGAAGGCAAACTGAGTTATTAGCACTTCCAACATGTCTGATCTTTAGTTTTTTTCAACTCTCTATTTTG s canFam1.chrUn 1828432 1462 + 91062872 TTTAAAAGAAACCCTACTTAGTCTCAATGGGTAGTTTTCAAAAGTCAAGTTGAATTTGGTTGGCTATTTACAATTTTTGCATCTATATTCACAGAATACATACTATGCCTCACAGCTTTTACATGGCTTCTTGTTTGTTTCCTTGTGTCACCCGTATCATGCTCGGAAGCTGGGCAGCTCCTCCCTGCTCTCTGTCTTCTGGAGCCACTTGTGATGGGAGAACACACAGTGTGCTGACGCTGGACGGGGCCTGCCC--CCAAGCTGTCATGACCTGGCTTCTCAGAGG-AAGGCCTTCAGCTGCTGTTTA-----ACTTTGAGTTTATTGATTGCTCCACATTTTCTATTTCTTCACATGCCAACATGGACACCattttcaaagtta----aaaatctttaaaaattgacagagttataaaaaatccaaatttttagattttctttaaaaga-------taaaatgaagctctagcaacatggggcctgcattctcacaaagcaagaaattagcccactcccaccctggtcagagcac-atgctctccagtctgccacaagcccc-aGAAGTGCATG----------GATTCCTG-ACCCTCAGTG---CAGGTGTGTAAGCCTGCCT--GTGAGCTCACTGTC---TGGGGGTGGCAGCTGCACAAGTGGGACTTCATCACGAGAGTGCCAGGCAT-CCTGTGACAACTGCTTCTCTGAGGGACC----------------TGCTGCCAGTGCTAAACTTACCTGGACAGACCcaagagactgaatctccaaggacttaacccatctgtaacatgggcatagggtagcacacccaccctcatag--agctctgagagcctaaccgagat-atggattttgtgaagcatttagcaaaat---gagcactcacagtcaggagct----tcataactgTTTCTGCCAGCTCCAGATCACATGCACACAGCAGTGGGGAGCCCCTTTTCCCAGCCCTGCTAAGAGGCTCACCCACCTCACAGGATCTCCTGGGAATGAAGACATTGTA---------CCCCTGGTCTTGGCCTGTCTCATGATCCAGTATGACTTCTGTACTCCTTTTTAATGGCTTACATTTCTGATATGCT-TGGAGCTGCAGGCAGAGGTGGCCTGA-------------------CCTCAACCTTGCCAAGCAGCCTG-CAGAAGCAAACAGGCAGGGCCAGTTCTGAGAG-TGAGGCCACCCTGCGTGGGACAGGCCAGGGAG-GAGGGCGCCCAGCAACCAGTCAGATCTGCATCT-GGCCCCAAGCACCCGACCTCCTACCAGCGCTGGG-------------ATGCAGCGGGGCG-GAAGTGACA------------GCGTCCCAGTGGACTCTCCCCT---GTCGCCAGTTCCAGTAACCTTGCATTCCTGCATCTTAGAAACACTCCTCCGGGGTGA--------AGGGCATTCCTGTGAC-TTCAAGCAAAAGCACCCTGACACTGACC------------------ACAGGACCGCCTCCAGTAATAAGAAAAGCAAACTGCG---TCAGTGCTTT---CATTTCTG-TCATTATTTCTTGAAAAGTCT-TATTTTG a score=91.0 s hg17.chr7_random 774418 1 + 778964 A s canFam1.chrUn 1829894 1 + 91062872 A a score=273.0 s hg17.chr7_random 774418 1 + 778964 A s panTro1.chr6_random 67045248 1 + 67355074 A s mm5.chr5 136478718 1 + 149219885 A a score=167958.0 s hg17.chr7_random 774419 650 + 778964 AAATCTTTGAA-CCTTCCTAGGGATGGAAGGG---GGATGTCAGAGTCAGGACACGGGTTGTTAT-TCCCCCTCCCATGATGTC-AAAGAGCAGAACA-CACAGAGGCACATATGCACCAACAGTAGGTCTGCA-GAGAATGTGCATATGTGTATTGACAAGGAGCAGACGGGAATGATGAGTGAAGAAAACAGAACATTTACCAAAAAGGACCCCGCTGAAGGCAGAACACTTGTTCCAGCGCATACTAATATGTTTTTCTGACTTCTTATGTTTTTCAACATGACGCTATCCAGGGGGAAAGAGTG-----GCCTGCT--CA-GTCTGTCCTCCTTTAGAAGTGGTTCTGAAAGACCTAGACATGCTGCCCTCGCTGGGGAAGAACCTCTCTCCATTGCGGATTTAAACCTTAGGTCAATGTTATTTAAGGAAAGGAAGTGGCCTAAACCCTTGGGCAGACCCTGGGTGCT---GGCATCACGGTCCTATCTCTTCT---------GTCCCAGCCCAAGACCCAGGGTTCCCATCTGCTGGGATCCCAGCGCCCCAGACACAGCATCCT--GGCTTGTGTTTAGCCTCTTCCACTGTTTAGGTGAAGGCTTGTTCCGTGACTCTGTTGACTACAAGTTTCCAAAAAATTCTCTCTAAATAGCAATAACTCAGTCCTGG s panTro1.chr6_random 67045249 650 + 67355074 AAATCTTTGAA-CCTTCCTAGGGATGGAAGGG---GGATGTCAGAGTCAGGACACGGGTTGTTAT-TCCCCCTCCCATGATGTC-AAAGAGCAGAACA-CACAGAGGCACATATGCACCAACAGTAGGTCTGCA-GAGAATGTGCATATGTGTATTGACAAGGAGCAGACGGGAATGATGAGTGAAGAAAACAGAACATTTACCAAAAAGGACCCCGCTGAAGGCAGAACACTTGTTCCAGCGCATACTAATATGTTTTTCTGACTTCTTACGTTTTTCAACATGACGCCATCCAGGGGGAAAGAGTG-----GCCTGCT--CA-GTCTGTCCTCCTTTAGAAGTGGTTCTGAAAGACCTAGACATGCTGCCCTCGCTGCGGAAGAACCTCTCTCCATTGCTGATTTAAACCTTAGGTCAATGTTATTTAAGGAAAGGAAGTGGCCTAAACCCTTGGGCAGACCCTGGGTGCT---GGCATCACGGTCCTATCTCTTCT---------GTCCCAGCCCAAGACCCAGGGTTCCCATCTGCTGGGATCCCAGCGCCCCAGACACAGCATCCT--GGCTTGTGTTTAGCCTCTTCCACTGTTTAGGTGAAGGCTTGTTCTGTGTCTCTGTTGACTACAAGTTTCCAAAAAATTCTCTCTAAATAGCAATAACTCAGTCCTGG s mm5.chr5 136478719 541 + 149219885 AAAAGTTTGAA-CCTTGGTTGGGGCGGG-----------GTCAGAGTGAAGGCATGA--TCTCAC-TCCCTGGCTC---AAGCC-AGTGAATAGAACC-TA-AGCAGCAC---TATACC------TGTCTTGCA-GAAAGTG---------GAATTCAC-AGAAACAGACAGGAAATGTGAGAGATGGAGACAGGCCATTTAC---AAGCGCTCCTACTATGTGCAGAAAATTCGTTC------------ACATATTCTCA------CTAATGTTTCTGATGGTGAGGCTG--AAGAGGGCGAGAGGG-----GGCAGCTAGAA-GTCTCATTTCC-TTGGCAACCACTCTGAAAGACCCAAACA---------------AGAAGGA-CTCTCTACTATTCTGATCTGCACTTTCAGTGAATACTATGTA--GACAGGAAGC-ACCCAGACTGCTGGACA---CCTTGGCGTC---AGT----CTGTCTTACACTGGCC---------ATCCCAGCCCAAG-----TGGCCTTCAGCTGCTGG----CCAGGGCGACAGATGTGGTGTCCC--AGCTTGAATTTAGGTTCTCTCACTGTTTAGGTGGGAGCTCACTCT-------------------AGTTCCAAATATTTCTGTGGAGACAGCAATAAGTCAGCCCTGG s rn3.chr12 30552009 540 - 46649226 AAATGTTTGAACCCTTGGTTGGGGTGGG-----------GTCAGAGTGAAGGCATGA--GCTCAC-TCCCTGACTC---TGGTC-AGTGAACAGAACCTCAAAGCAGCAC---CATGCC-------TGTCTGCA-GAAAGT----------GAATTGAC-ACAAACAGACAGGAATTATGAGCAATGGAAACAGACCGTCTAC---AAAAGCTCCTACTATGTGCAGAAAATTTGTTC------------ACGTATTCTCA------CTGATGTTTCTGGTGGTGAGGCTG--AAGAAGGGGAAGGGA-----GGCAGCT--AATGTCTCATTTCC-TTGGCAAGCGCCCTGAAAGACCCAAACA----------------GAAGGA-CTCTCTGCTATTCTGATCTGCACTTTCAGTCAATGCTATGTA--GACAGGAAGC-ACGCAGACTCCCAGGCC---CCTTGGTGTC---GGT----CTGTCTTACACTGGCC---------ATCCCAGCCCAAG-----TGGCCTTCTGCTGCTGG----TCAGAGCAAAAGATGTGATGTCCC--GGCTTGTGTTTAGGATCTCTCACTGTTTAGGTGGGAGCTCGTTGT-------------------ATTTTCAAATATTTCTGTGGAGGCAGTAATAACTCGGCCCTGG s canFam1.chrUn 1829895 636 + 91062872 AAAATGTCAAA-CTTTCAGAAGCATGGAGGGACACGGATGTCAGAG-CAGGATACA---TATTATATTCCCAGCTGGTGATGTCAAAAGAGCAGAATG-CAGCACAACACACATGCACCAACCACAGGTCTGCACAAAAGCGCACATACGTGTATTGACAAGGACCGGACAGGAGCCATGAGGGATGAGAATAGAACATGAAA--ATAAAGACCATCCAGACCACAGAAAACACGTTCAAGTGCATACTAGTGTGTTTTCCTGACTCC-----------AAAATAATGCCA--TAAATGGGAAAAGTGCAACTGACGGCT---G-GTCTGGCCCCT-TTAGAAATGGTTCTGGAAGACCCAAACGTGCTGCTACAGCCTTGGGAGAATTTCTCTCTCTGGCTGTTTGGACTCACAGGTCAATGTCACCCA-GAGAAAGAAGTGCCCTGGACCTGTGGGCAAAGCTCTGGTGCATTGGGCACCATGGCAACATCCTGTTTGACGGGCCAGTCATAGCCCGAG-----TGACC-----AAGCTGG-------GCACTCCAGACACAGTGGCCCCAAGGTTGTGTTTAGGCTTCTCCACTGTTTGGGTGAAAGCTCACTATGTTTCTCTCTGGACTGCAACTTTCCAAATAATTCTCTGTAAACAGTGATCACTCAGGCATTG a score=1768.0 s hg17.chr7_random 775069 30 + 778964 C------------ATCATGGAAAGCAGAG--CT-CCTGCTCCCGG s panTro1.chr6_random 67045899 30 + 67355074 C------------ATCATGGAAAGCAGAG--CT-CCTGCTCCCAG s mm5.chr5 136479260 43 + 149219885 CTGTTTGTGCACTGTGGTGTGGGGCAAGG--CTGCCTGCTCCCGG s canFam1.chrUn 1830531 33 + 91062872 -----------CCATGGTGAGCGACGAGGTACTACCCACTCCTG- a score=8284.0 s hg17.chr7_random 775099 51 + 778964 CTGGGGTGCCAACAGCACGGTGTTCTCAAATCCCCTGGGACCCTCG-GCCAC s panTro1.chr6_random 67045929 51 + 67355074 CTGGGGTGCCAACAGCACAGTGTTCTCAAATCCCCTGGGACCCTCG-GCCAC s canFam1.chrUn 1830564 52 + 91062872 CTGGGGCACCAGGACCACGATGTTTGCAGACCTTCAGGAGACCTGGTGCCAC a score=50245.0 s hg17.chr7_random 775150 543 + 778964 ACTCTTGACTGTGGGTCTGGTTCCTAACCACAAACATGTGGtaacaacaattctctctctggccaaactttagtcaggttccagaaccttcttctaggcccatctgtacttccttgtaaaataatcctgccaaatcagttcagccagaaccgatcacccaccataatcaatatgtgatcatctttgatatctgatcatcctcagtgtctgatcaggctcctcacacccaccaccccatgggggatgtctggtcaccctggcctctcttcagcaacaatcctgttaggtcagtgaagccagaaccccccagcccctggtgtttcctctcggtcattttccatccactgccacttaggtggaaattctcacgttctcatctcatattcggaggcaagcccaagctccttcctccaccgcaagaccccattgcagtgatccctgtacctagtgcaatggtccagaatgaagtcttccatgccatgctttaacacacgtcactgaataacgttttcttGGCATTGGAGAGAGAAGCGCGTGAATGGC s panTro1.chr6_random 67045980 543 + 67355074 ACTCTTGACTGTGGGTCTGGTTCCTAACCACAAATGTGTGGtaacaacaattctctccttggccaaactttagtcaggttccagaaccttcttctaggcccatctgtacttccttgtaaaataatcctgccaaatcagttcagccagaaccgatcacccaccataatcaatatgtgatcatctttgatatctgatcatcctcagtgtctgatcaggctcctcacacccaccaccccatgggggatgtctggtcaccctggcctctcttcagcaacaatcctgttaggtcagtgtagccagaaccccccagcccctggtgtttcctctcggtcattttccatccactgccacttgggtggaaattctcacgttctcatctcatattcggaggcaagcccaagctcctttctccaccgcaagaccccattgcagtgatccctgtacctagtgcaatggtccagaatgaagtcttccataccaggctttaacacacgtcactgaataacgttttcttGGCATCGGAGAGAGAAGCGCATGAATGGC a score=42401.0 s hg17.chr7_random 775693 308 + 778964 CAGGGTTCAGGGTATGGAATGAACCTATGGAGTCCCAGAAGGGAGGTACAAGCCAAGTGTCCGCTCTACCCTGTGGATCTAGGGAAGGAGGTGGAGGATGGCAAATTCCTTCTGTACATTCTTGGGCTTCCAA-CCAGAATTGCTAGTCCATGCCACTGGCCATGGCGTCCAGCCCTGGATGTTCACAGTATCCCCAGATACCCACGCCAGCCCTGAGCTTCTGAATCAGAATCCACTTTGGATGAAGACCAGCACCCGCAGGTTTAGGTTGGTGACAGCAAACTTTTATCTTAAAAATATGCAT--GCTg s panTro1.chr6_random 67046523 310 + 67355074 CAGGGTTCAGGGTATGGAATGAACCTATGGAGTCCCAGAAGGGAGGTACAAGCCAAGTGTCCGCTCTACCCTGTGGATCTAGGGAAGGAGGTGGAGGATGGCAAATTCCTTCTGTACCTTCTTGGGCTTCCAA-CCAGAATTGCCAGTCCATGCCACTGGCCATGGCGTCCAGCCCTGGATGTTCACAGTATCCCCAGATACCCATGCCAGCCCTGAGCTTCTGAATCAGAATCCACTTTGGATGAAGACCAGCACCTGCAGGTTTAGGTTGGCGACAGCAAACTCTTATCTTAAAACTACGCATTCGCTg s canFam1.chrUn 1830655 265 + 91062872 CAGGACTCTGAGTGGGGAGCG------TGGA-CCCCAGGAGAGAGGCCCCAGTTGAGACTCCACTCTACCCTGTACCGCCAGGGGAAGGCATAGAGG----------------------CCCAGGATCTCCAACCCAGAATCACCAGTGTACACCTCTGG--------------TTTTGATGTTTACCGTGTCCCCAGATGCCCAGGACAACTC-GAGCTGCCAAGTAAGAAGGCACCTTGGATGGGGACCAGTGCCTAAAGGTGTAGGCTGGGGAGGATGAGCTCTTCTATTAAGAATGCACCC--AGTA a score=28135.0 s hg17.chr7_random 776001 315 + 778964 accaagcatggtggctcacacctgtaatctcagcactttgggaggctgaggcaggcggatcacctgaggtcaggagttcgagaccagcctggccaaca-tggggaaa-ccccatctctactaaaaatacaaacattagccaggcttggtgacatgtgcctgtaatcccagctattcaggagactgaggcaggagaatcgcttgaatccagaaggtgggggttgcattgagtgagatcgtgccactgcactccagcctgggcaacagagcaagactccatctcaaaaagaaaaaaaaaaaGTGCATGCTCTTTGAATG s panTro1.chr6_random 67046833 316 + 67355074 accaggcatggtggctcacacctgtaatctcagcactttgggaggctgaggcaggcggatcacctgaggtcaggagttcgagaccagcctggccaacattggggaaacccccgtctctactaaaaatacaaaaattagccaggcttggtgacatgtgcctgtaatcccagctactcaggagactgaggcaggagaatcgcttgaatccagaaggtgggggttgcattgagtgagatcgtgccactgcactccagcctgggcaacagagcaagactccatctcaaaaag-aaaaaaaaaaGTGCATGCTCTTTGAATG a score=172913.0 s hg17.chr7_random 776316 1021 + 778964 GGTTTTTCTTTCCCCTAGCATTTCCTCTATAGAAGCAATTTTTAAAATATATAAGATGTGGCTAGCAGGCTGTTTATCACAGAGCTGCTTGTAGCCATGAAGGTTTGAAATATGCAATAGTTGGTGATTGGTTAATTAAGTTACAGAATGGAACACAAGGAGGTATTAAAAAACAGTGATGTGGAGACACATCCACGGAGACTGGATGATGGTCACTATAGGCCTATTAAATTTAAAAATGGGTcataaggcaaaatctgatcaaactgcaaggagaaacagacaaatgcaccattatagtttaagactttaacgcccctcagctagttattgacagatccagcaggcagaaaatcagtaatctagtttgaaaaattatacacaggaaataaaaaaagagaat-cagtaagaacatagattaactgaatggcaccatcagttaacaggaaataattgacatttacag-------acttcatcaaacaagagcagactacacattcttctcaagctcacatgaaacatttaccaagagagaaaacattctgggccataaaatatccctgaacaaatgtaaaagaacagaaatcatatagtgcatgctctcacaccggaagtgaattaaactagaagtcagtaacagaaagatagataggaaatcccacaatatttggagattaaataacatacttcta--aataatgcatgggtcaaaaaagaaggctcaagagaagttgaaaaatattttgaacgaaatgaaaatgaaaatagagcttatcataatatgcaggaggtagcaaaagcaacacttagagggaaatctatagcactgaatgcatatatt------aggaaaagatccaaaatcaacaacctaagcttccatcttgggaaa-ctacaacaagaagaggaaattaaatccaaagcaacaaaaagaaaagtaagaataaaaatt--------aagacagaaataaatggaattgaaaataggaaaatactaaagaaaatcgatgcagccaaagcatctctaacttcagaaat s panTro1.chr6_random 67047149 1023 + 67355074 GGTTTTTCTTTCCCCTAGCATTTCCTCTATAGAAGCAATTTTAAAAATATATAAGATGTGGCTAGCAGGCTGTTTATCACAGAGCTGCTTGTAGCCATGAAGGTTTGAAATATGCAATAGTTGGTGATTGGTTAATTAAGTTACAGAATGGAACACAAGGAGGTATTAAAAAACAGTGATGTGGAGACACATCCACGGAGACTGGGTGATGGTCACTATAGGCCTATTAAATTTAAAAATGGGTcataaggcaaaatctgatcaaactgcaaggagaaacagacaaatgcactattatagtttaagactttaacgcccctcagctagttattgacagatccagcaggcagaaaatcagtaatctagtttgaaaaattacacacaggaaataaaaaaagagaatgcagtaagaacatagattaactgaatggcaccatcagttaacaggaaataattgacatttacag-------acttcatcaaacaagagcagactacacattcttctcaagctcacatgaaacatttaccaagagagaaaacattctgggccataaaatatccctgaacaaatgtaaaagaacagaaatcatatagtgcatgctctcacaccggaagtgaattaaactagaagtcagtaacagaaagatagataggaaatcccacaatagttggagattaaataacatacttcta--aataacgcatgggtcaaaaaagaaggctcaagagaagttgaaaaatattttgaacgaaatgaaaatgaaaatagagcttatcataatatgcaggaggtagcaaaagcaacacttagagggaaatctatagcactgaatgcatatatt------aggaaaagatccaaaatcaacaacctaagcttccatcttgggaaatctacaacaagaagaggaaattaaatccaaagcaacaaaaagaaaagtaagaataaaaatt--------aagacagaaataaatggaattgaaaataggaaaatactaaagaaaatcgatgcagccaaagcatctctaacttcagaaat s canFam1.chrUn 1830929 965 + 91062872 AGGTTTCCATTCCCTTCTCATGTTAACCATAGAGATATGTTTACACACATATAAGATGAGGCTACTGGACTGCTTGGGACAGCGCTATTTGTAGTCATGAAAATCTGTAATACCTAACAGTTGGGGACTCGTTAATTAAGTCACACAATGGAATCCAAG-------------ATGGAGGTGCAGAGGCTCATCCATGGAGAAT-AATGGTGTTTACTATAGGTCTACTAAG-TAAAAAGCAGGTTGGAaaactaaacctgatagaattgcaaggacaaatagacaaatctaa-attatagttgaggatttcaacacccgtctatgaattattggtagattca-caggtagaa-----------------------------------------------------agtaagggcatacctgaactgaagagcaccatcacttaactagatgtggttgacatttatagaatgtcaactgcaccaaacaacagtagaacacacattcttctccagtttggatgaaacatttaccaagacagacaacatcctgggccagaaaatacatctgaatacatttaaaaatatataagtcatatagtatctgctctcagacc-acagtgggttaaactagaaatcagtaacaaaaaggtagctcaaaagtcc--caatatttggaggttaagcaacacactctgaataacaacacatgtgtcaaaaaaggtggctcaagagaaattgaaaact-tttacaactaaatgaaaattaaaaagcagctaattaaaattaatgggatgtagcaaaagtagtgcttcaagggaaat-tgtagcactgaatgcatatattttaaaaagggaaatacctaaaatcaataatctaagctcccaccttaggaaa-ctagaa-aagaagagcaaattaaacctaaag-aaagccaagaaaataaataataaaaattaaagcaaaaaagcaaaaatcagtggaacttaaaatcagaaatgaatagagaaaatcaacatagtcaaaggtggtt---ctttgaaaat a score=12004.0 s hg17.chr7_random 777337 169 + 778964 gaaagaagggacatcactacaggtcccatggacaagagacatcactacaggtcccatggacaaggggcataactacaggtcctatggacaaggggcaccgctacaggtcctatggacaaggggcatcactacaggtcccatggacaaggggcatcactacaggtcctat s panTro1.chr6_random 67048172 141 + 67355074 gaaagaagggacatcactacaggtcccatggacaagagacatcactacaggtcccatggacaaggggcataactacaggtcctatggacaaggggcatcgctacaggtcccatggacaaggggcatc----------------------------actacaggtcctat a score=10062.0 s hg17.chr7_random 777506 69 + 778964 ggacaagggacaccactacaggtcctatggacattaaaaataaaataatattatgaaaaactctatgag s panTro1.chr6_random 67048313 69 + 67355074 ggacaagggacaccactacaggtcctatggacattaaaaataaaataatattatgaaaaactctatgag s canFam1.chrUn 1831982 58 + 91062872 ggaca----gcatcactccagagcccatgaatattaaaagatcaataa-------aagaatactatgaa a score=27781.0 s hg17.chr7_random 777575 313 + 778964 accaggcacggtggctcatgcctgtaatcccagcattttgggaggccgaggcaggagatcacctgaggtcaggagttcgagcccaacctggccaagatggtgaaaccccatctctagtaaaaaatacacaaaattagctgggcatggtggcaggcacctgtaatcccagctactggggaggctgaggcagaagaatcacttgaacccaggaggcagaggttgcagtgagccgagatcgcgccattgcactccagcctgggtgacaagagcaaaactccatctcaaaaaaaaaaaaaaaaaaagaaagaaagaa s panTro1.chr6_random 67048382 302 + 67355074 accaggcacggtggctcatgcctgtaatcccagcattttgggaggccgaggcaggagatcacctgaggtcagaagttcgagcccaacctggccaagatggtgaaaccccatctctagtaaaaaatacacaaaattagctgggcatggtggcagacacctgtaatcccagctactggggaggctgaggcagaagaatcacttgaacccaggaggcagaggttgcagtgagccgagatcacgccattgcactccagcctgggtgacaagagcaaaactccatctcaaaaaaaaa-----------aaagaaagaa a score=29128.0 s hg17.chr7_random 777888 169 + 778964 aaactctatgactacacatttgataactcagataaaatgggccagttccttgaaatacacaatctactaaaattcacacaagaagcaacagataatctgaacaagcttgtatctattaaagaagttgaatcagtaattattaacctttcaaaacaaaaagcgtcaagcc s panTro1.chr6_random 67048684 169 + 67355074 aaactctatgactacacatttgataactcagataaaatgggccagttccttgaaatacacaatctactaaaattcacacaagaagcaatagacattctgaacaagcttgtatctattaaagaagttgaatcagtaattattaacctttcaaaacaaaaagcgtcaagcc s canFam1.chrUn 1832040 157 + 91062872 caattctatgtccacaaatttgcaaacctggatgaaagggaccaagtttttgaaagacattatgtaccaaaacacatacaagaaa-aatagataatata-----------atctaaggaagaaactaaatcaataattattaactttccaaaacagaaagcagcaggcc a score=31136.0 s hg17.chr7_random 778057 330 + 778964 caggctgggcacagcagctcacacctgtaatcccagcacttttagaggctgaggcaggaagatcacttgaggccaggcatttgagagcaacctgggcaacatagcaatacctcatctctactaaaaattttaaaaaaattaatcaggcctggtggtgcacacctgtagtcccaactacttggaaggatgaggccagagaatcacttgagtccaggagctggcaattgcagtgagctatgattgttccactgcactccagcctggatgacagagacagaccttgtctctcagaaacaaaaaacaaaaataaaaacaaaaaaggactaagca s panTro1.chr6_random 67048853 330 + 67355074 caggctgggcacagcagctcacacctgtaatcccagcacttttagaggctgaggcaggaagatcacttgaggccaggcattcgagagcaacctgggcaacatagcaatacctcatctctactaaaaattttaaaaaaattaatcaggcctggtggtgcacacctgtagtcccaactacttggaaggatgaggccagagaatcacttgagtccaggagctggcaattgcagtgagctatgattgttccactgcactccagcctggatgacagagacagaccttgtctctcagaaacaaaaaataaaaataaaaacaaaaaaggactaagca a score=25809.0 s hg17.chr7_random 778387 137 + 778964 cagatgtgttcactagttaattctaccaaatattt-aggaagaaataataccaattctctacattagctt-cagaaaatagaagcagatgaaacacttcctaaataattctatgaggacagctttaacacgaaaacaaa s panTro1.chr6_random 67049183 137 + 67355074 cagatgtgttcactagttaattctaccaaatattt-aggaagaaataataccaattctctacattagctt-cagaaaatagaagcagatgaaacacttcctaaataattctatgaggacagctttaacacgaaaacaaa s canFam1.chrUn 1832197 139 + 91062872 cagatgggttcactggtaaaatccaacaaatatttaaagaagaaactataccaattctcaacaatctcttccagaaaactgaagtagagaaaacactttctcatgcattctatgaggacagtatcaccccaagaccaaa a score=374.0 s hg17.chr7_random 778524 40 + 778964 ttaatctgatcttggaggaaaa------aaaaaAGGAAAGATAAAG s canFam1.chrUn 1832336 36 + 91062872 acca----------gagaaaagcattacaaaaaaggaaaattaaag